BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780526|ref|YP_003064939.1| putative transcription
regulator protein [Candidatus Liberibacter asiaticus str. psy62]
         (223 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780526|ref|YP_003064939.1| putative transcription regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040203|gb|ACT56999.1| putative transcription regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 223

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV
Sbjct: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK
Sbjct: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL
Sbjct: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN
Sbjct: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223


>gi|315122283|ref|YP_004062772.1| putative transcription regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495685|gb|ADR52284.1| putative transcription regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 223

 Score =  365 bits (936), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 198/223 (88%), Positives = 209/223 (93%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M VLIDDRALVK+GYI+LF DDGVSLEGF+SLEFEEW QS A+EDVSAIEAFLIG GEKV
Sbjct: 1   MLVLIDDRALVKNGYISLFSDDGVSLEGFHSLEFEEWFQSLAQEDVSAIEAFLIGTGEKV 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +ELPRIIR+ SQ+PLI ISDY SLQ TLDFFD GVDDVV+KPIHHREILARVAAI+RRLK
Sbjct: 61  MELPRIIRSQSQMPLIAISDYSSLQKTLDFFDVGVDDVVHKPIHHREILARVAAIHRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+N+R E GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL
Sbjct: 121 VANHRVEIGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDE VEENVVESHISKLRKKLR KLGFDPVDSKRFLGYSIDWN
Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGFDPVDSKRFLGYSIDWN 223


>gi|307311573|ref|ZP_07591214.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307318928|ref|ZP_07598359.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|12057231|gb|AAG48153.1| transcriptional regulator [Sinorhizobium meliloti]
 gi|306895342|gb|EFN26097.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899590|gb|EFN30219.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 223

 Score =  304 bits (779), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 156/223 (69%), Positives = 182/223 (81%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDRALVKDGY +LFG +G+   GF+  EF EW+ S+A  D+ A+EAFLIG+GE  
Sbjct: 1   MIVVVDDRALVKDGYASLFGREGIPSTGFDPREFGEWVSSAADSDIDAVEAFLIGQGEST 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L LPR IR  S+ P+I +SD PSL+ TL  FD GVDDVV KP+H REILARVAAI RRL 
Sbjct: 61  LTLPRAIRDRSRAPVIAMSDTPSLENTLALFDCGVDDVVRKPVHPREILARVAAIRRRLT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  + GPIRVF+DGRDPE+ GEVF LPRRERRILEYL+ANRG+RV+K+QIF+AIYG+
Sbjct: 121 AIANFTDIGPIRVFADGRDPEINGEVFALPRRERRILEYLVANRGRRVSKSQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDE VEENVVESHISKLRKKLR KLGFDP+DSKRFLGY IDWN
Sbjct: 181 FDEDVEENVVESHISKLRKKLRKKLGFDPIDSKRFLGYCIDWN 223


>gi|15964431|ref|NP_384784.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15073608|emb|CAC45250.1| Response regulator of exponential growth motility [Sinorhizobium
           meliloti 1021]
          Length = 223

 Score =  303 bits (776), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 181/223 (81%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDRALVKDGY +LFG +G+   GF+  EF EW+ S+A  D+ A+EAFLIG+GE  
Sbjct: 1   MIVVVDDRALVKDGYASLFGREGIPSTGFDPREFGEWVSSAADSDIDAVEAFLIGQGEST 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LPR IR  S+ P+I +SD PSL+ TL  FD GVDDVV KP+H REILARVAAI RRL 
Sbjct: 61  FTLPRAIRDRSRAPVIAMSDTPSLENTLALFDCGVDDVVRKPVHPREILARVAAIRRRLT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  + GPIRVF+DGRDPE+ GEVF LPRRERRILEYL+ANRG+RV+K+QIF+AIYG+
Sbjct: 121 AIANFTDIGPIRVFADGRDPEINGEVFALPRRERRILEYLVANRGRRVSKSQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDE VEENVVESHISKLRKKLR KLGFDP+DSKRFLGY IDWN
Sbjct: 181 FDEDVEENVVESHISKLRKKLRKKLGFDPIDSKRFLGYCIDWN 223


>gi|227820874|ref|YP_002824844.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium fredii NGR234]
 gi|227339873|gb|ACP24091.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium fredii NGR234]
          Length = 223

 Score =  301 bits (771), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 153/223 (68%), Positives = 181/223 (81%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LVKDGY +LFG +G+   GF+  +F EW+ ++A  D+ A+EAFLIG+GE  
Sbjct: 1   MIVVVDERELVKDGYASLFGREGIPSTGFDPKDFGEWVNTAADSDIDAVEAFLIGQGESA 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LPR IR  SQ P+I +SD PSL+ TL  FD GVDDVV KP+H REILARVAAI RRLK
Sbjct: 61  FSLPRAIRDRSQAPVIAMSDTPSLENTLALFDCGVDDVVRKPVHPREILARVAAIRRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  + GPIRVF+DGRDPE+ GEVF LPRRERRILEYL+ANRG+RV+K+QIF+AIYG+
Sbjct: 121 AIANYTDIGPIRVFADGRDPEINGEVFALPRRERRILEYLVANRGRRVSKSQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDE VEENVVESHISKLRKKLR KLGFDP+DSKRFLGY IDWN
Sbjct: 181 FDEDVEENVVESHISKLRKKLRKKLGFDPIDSKRFLGYCIDWN 223


>gi|150395502|ref|YP_001325969.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027017|gb|ABR59134.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 223

 Score =  300 bits (769), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 153/223 (68%), Positives = 181/223 (81%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+RALVKDGY +LFG +G+   GF+  EF EW+ ++A  D+ A+EAFLIG+G+  
Sbjct: 1   MIVVVDERALVKDGYASLFGREGIPSSGFDPKEFGEWVSTAADSDIDAVEAFLIGQGDSA 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L LPR IR  S+ P+I +SD PSL+ TL  FD GVDDVV KP+H REILARVAAI RRL 
Sbjct: 61  LSLPRAIRDRSRAPVIAMSDTPSLENTLALFDCGVDDVVRKPVHPREILARVAAIRRRLT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  + GPIRVF+DGRDPE+ GEVF LPRRERRILEYL+ANRG+RV+K QIF+AIYG+
Sbjct: 121 AIANFTDIGPIRVFADGRDPEINGEVFALPRRERRILEYLVANRGRRVSKAQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDE VEENVVESHISKLRKKLR KLGFDP+DSKRFLGY IDWN
Sbjct: 181 FDEDVEENVVESHISKLRKKLRKKLGFDPIDSKRFLGYCIDWN 223


>gi|239834427|ref|ZP_04682755.1| Sensory transduction protein regX3 [Ochrobactrum intermedium LMG
           3301]
 gi|239822490|gb|EEQ94059.1| Sensory transduction protein regX3 [Ochrobactrum intermedium LMG
           3301]
          Length = 227

 Score =  278 bits (710), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 134/225 (59%), Positives = 171/225 (76%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S  ++D+ A+EAFLIG+    
Sbjct: 1   MIVVVDDRDIVTEGYSSWFGREGITTTGFTPTDFDEWVESVPQQDIMAVEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S    ++  E GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASAASSDDGTELGPIRVFSDGRDPQINGVDFPLPRRERRILEYLIANRGRRLNKAQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR ++GFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLREQMGFDPIDSKRFLGYCIN 225


>gi|153011509|ref|YP_001372723.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151563397|gb|ABS16894.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 227

 Score =  277 bits (708), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 134/225 (59%), Positives = 171/225 (76%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S  ++D+ A+EAFLIG+    
Sbjct: 1   MIVVVDDRDIVTEGYSSWFGREGITTTGFTPTDFDEWVESVPQQDIMAVEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S    ++  E GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASAASNDSGTELGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKAQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR ++GFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLREQMGFDPIDSKRFLGYCIN 225


>gi|306841275|ref|ZP_07473986.1| Protein petR [Brucella sp. BO2]
 gi|306288677|gb|EFM60008.1| Protein petR [Brucella sp. BO2]
          Length = 227

 Score =  277 bits (708), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 135/225 (60%), Positives = 169/225 (75%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S     +  + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGTDGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|15887918|ref|NP_353599.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
 gi|15155512|gb|AAK86384.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
          Length = 223

 Score =  277 bits (708), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 151/223 (67%), Positives = 185/223 (82%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LVKDGY +LFG +G+   GF+ +EF EW+ ++A  D++A+EAFLIG+G++ 
Sbjct: 1   MIVVVDERELVKDGYTSLFGREGIPSTGFDPVEFGEWVSTAADSDLAAVEAFLIGQGDRS 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP+ IR  +  P+I +SD PSL+ TL  FDSGVDDVV KP+H REILAR AAI RRL+
Sbjct: 61  FSLPKAIRDRTTAPVIAVSDQPSLEATLALFDSGVDDVVRKPVHPREILARAAAIRRRLQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V +N  + GPIRVFSDGRDPEV GEVF LPRRERRILEYL+ANRG+RV+K+QIF+AIYG+
Sbjct: 121 VISNFTDAGPIRVFSDGRDPEVCGEVFALPRRERRILEYLIANRGRRVSKSQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FD+ VEENVVESHISKLRKKLR KLG+DPVDSKRFLGYSIDW 
Sbjct: 181 FDDDVEENVVESHISKLRKKLRKKLGYDPVDSKRFLGYSIDWQ 223


>gi|325291960|ref|YP_004277824.1| Response regulator of exponential growth motility [Agrobacterium
           sp. H13-3]
 gi|325059813|gb|ADY63504.1| Response regulator of exponential growth motility [Agrobacterium
           sp. H13-3]
          Length = 223

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 151/223 (67%), Positives = 185/223 (82%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LVKDGY +LFG +G+   GF+ +EF EW+ ++A  D++A+EAFLIG+G++ 
Sbjct: 1   MIVVVDERELVKDGYTSLFGREGIPSTGFDPVEFGEWVSTAADSDLAAVEAFLIGQGDRS 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP+ IR  +  P+I +SD PSL++TL  FDSGVDDVV KP+H REILAR AAI RRL+
Sbjct: 61  FSLPKAIRDRTTAPVIAVSDQPSLESTLALFDSGVDDVVRKPVHPREILARAAAIRRRLQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V +N  + GPIRVFSDGRDPEV GEVF LPRRERRILEYL+ANRG+RV+K QIF+AIYG+
Sbjct: 121 VISNFTDAGPIRVFSDGRDPEVGGEVFALPRRERRILEYLIANRGRRVSKAQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FD+ VEENVVESHISKLRKKLR KLG+DPVDSKRFLGYSIDW 
Sbjct: 181 FDDDVEENVVESHISKLRKKLRKKLGYDPVDSKRFLGYSIDWQ 223


>gi|17988502|ref|NP_541135.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23500855|ref|NP_700295.1| transcriptional regulator [Brucella suis 1330]
 gi|62317958|ref|YP_223811.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941]
 gi|83269935|ref|YP_419226.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|163845458|ref|YP_001623113.1| hypothetical protein BSUIS_B1367 [Brucella suis ATCC 23445]
 gi|225686886|ref|YP_002734858.1| protein petR [Brucella melitensis ATCC 23457]
 gi|254691610|ref|ZP_05154864.1| Protein petR [Brucella abortus bv. 6 str. 870]
 gi|254699234|ref|ZP_05161062.1| Protein petR [Brucella abortus bv. 2 str. 86/8/59]
 gi|256015899|ref|YP_003105908.1| transcriptional regulator, OmpR family [Brucella microti CCM 4915]
 gi|256042867|ref|ZP_05445813.1| Protein petR [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112176|ref|ZP_05453097.1| Protein petR [Brucella melitensis bv. 3 str. Ether]
 gi|256256797|ref|ZP_05462333.1| Protein petR [Brucella abortus bv. 9 str. C68]
 gi|256261977|ref|ZP_05464509.1| flagellar transcriptional regulator ftcR [Brucella melitensis bv. 2
           str. 63/9]
 gi|260544143|ref|ZP_05819964.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260564104|ref|ZP_05834589.1| flagellar transcriptional regulator ftcR [Brucella melitensis bv. 1
           str. 16M]
 gi|260757241|ref|ZP_05869589.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260763734|ref|ZP_05876062.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883045|ref|ZP_05894659.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|265989302|ref|ZP_06101859.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993602|ref|ZP_06106159.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|294852969|ref|ZP_06793641.1| flagellar transcriptional regulator ftcR [Brucella sp. NVSL
           07-0026]
 gi|297250150|ref|ZP_06933851.1| flagellar transcriptional regulator ftcR [Brucella abortus bv. 5
           str. B3196]
 gi|306845420|ref|ZP_07477994.1| Protein petR [Brucella sp. BO1]
 gi|75505045|sp|Q576I4|FTCR_BRUAB RecName: Full=Flagellar transcriptional regulator ftcR
 gi|81846997|sp|Q8FUS8|FTCR_BRUSU RecName: Full=Flagellar transcriptional regulator ftcR
 gi|81850829|sp|Q8YDL7|FTCR_BRUME RecName: Full=Flagellar transcriptional regulator ftcR
 gi|123740838|sp|Q2YJF8|FTCR_BRUA2 RecName: Full=Flagellar transcriptional regulator ftcR
 gi|17984294|gb|AAL53399.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23464520|gb|AAN34300.1| transcriptional regulator [Brucella suis 1330]
 gi|62198151|gb|AAX76450.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941]
 gi|82940209|emb|CAJ13265.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|163676181|gb|ABY40291.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|225642991|gb|ACO02904.1| Protein petR [Brucella melitensis ATCC 23457]
 gi|255998559|gb|ACU50246.1| transcriptional regulator, OmpR family [Brucella microti CCM 4915]
 gi|260097414|gb|EEW81288.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260151747|gb|EEW86840.1| flagellar transcriptional regulator ftcR [Brucella melitensis bv. 1
           str. 16M]
 gi|260674151|gb|EEX60972.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260677349|gb|EEX64170.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872573|gb|EEX79642.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|262764472|gb|EEZ10504.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|262999971|gb|EEZ12661.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263091461|gb|EEZ15997.1| flagellar transcriptional regulator ftcR [Brucella melitensis bv. 2
           str. 63/9]
 gi|294818624|gb|EFG35624.1| flagellar transcriptional regulator ftcR [Brucella sp. NVSL
           07-0026]
 gi|297174019|gb|EFH33383.1| flagellar transcriptional regulator ftcR [Brucella abortus bv. 5
           str. B3196]
 gi|306274163|gb|EFM55979.1| Protein petR [Brucella sp. BO1]
 gi|326411304|gb|ADZ68368.1| protein PetR [Brucella melitensis M28]
 gi|326554593|gb|ADZ89232.1| protein PetR [Brucella melitensis M5-90]
          Length = 227

 Score =  276 bits (706), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/225 (60%), Positives = 168/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|306840137|ref|ZP_07472922.1| Protein petR [Brucella sp. NF 2653]
 gi|306404782|gb|EFM61076.1| Protein petR [Brucella sp. NF 2653]
          Length = 253

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/225 (60%), Positives = 169/225 (75%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 27  MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 86

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 87  HRLPARIRERYKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 146

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S     +  + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 147 ASATSGTDGTQLGPIRVFSDGRDPQINGINFPLPRRERRILEYLIANRGRRLNKVQIFSA 206

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 207 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 251


>gi|189023209|ref|YP_001932950.1| Response regulator receiver [Brucella abortus S19]
 gi|237817505|ref|ZP_04596495.1| Protein petR [Brucella abortus str. 2308 A]
 gi|189021783|gb|ACD74504.1| Response regulator receiver [Brucella abortus S19]
 gi|237787260|gb|EEP61478.1| Protein petR [Brucella abortus str. 2308 A]
          Length = 258

 Score =  276 bits (705), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/225 (60%), Positives = 168/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 32  MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 91

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 92  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 151

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 152 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 211

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 212 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 256


>gi|254720772|ref|ZP_05182583.1| Protein petR [Brucella sp. 83/13]
 gi|265985830|ref|ZP_06098565.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|264664422|gb|EEZ34683.1| two component transcriptional regulator [Brucella sp. 83/13]
          Length = 227

 Score =  276 bits (705), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/225 (60%), Positives = 169/225 (75%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERYKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S     +  + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGTDGTQLGPIRVFSDGRDPQINGINFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|254695094|ref|ZP_05156922.1| Protein petR [Brucella abortus bv. 3 str. Tulya]
 gi|261215445|ref|ZP_05929726.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260917052|gb|EEX83913.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 227

 Score =  275 bits (704), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 135/225 (60%), Positives = 168/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDGEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|254699263|ref|ZP_05161091.1| Protein petR [Brucella suis bv. 5 str. 513]
 gi|261749703|ref|ZP_05993412.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261739456|gb|EEY27382.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
          Length = 227

 Score =  275 bits (703), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 134/225 (59%), Positives = 168/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDNRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|254706496|ref|ZP_05168324.1| Protein petR [Brucella pinnipedialis M163/99/10]
 gi|254711219|ref|ZP_05173030.1| Protein petR [Brucella pinnipedialis B2/94]
 gi|254711819|ref|ZP_05173630.1| Protein petR [Brucella ceti M644/93/1]
 gi|254714888|ref|ZP_05176699.1| Protein petR [Brucella ceti M13/05/1]
 gi|256030152|ref|ZP_05443766.1| Protein petR [Brucella pinnipedialis M292/94/1]
 gi|256158331|ref|ZP_05456235.1| Protein petR [Brucella ceti M490/95/1]
 gi|256252735|ref|ZP_05458271.1| Protein petR [Brucella ceti B1/94]
 gi|260166796|ref|ZP_05753607.1| transcriptional regulator, OmpR family protein [Brucella sp. F5/99]
 gi|261216578|ref|ZP_05930859.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261219814|ref|ZP_05934095.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261313949|ref|ZP_05953146.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261318811|ref|ZP_05958008.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261319448|ref|ZP_05958645.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261756174|ref|ZP_05999883.1| response regulator receiver [Brucella sp. F5/99]
 gi|265987182|ref|ZP_06099739.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265996845|ref|ZP_06109402.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|260918398|gb|EEX85051.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|260921667|gb|EEX88235.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292138|gb|EEX95634.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261298034|gb|EEY01531.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261302975|gb|EEY06472.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261736158|gb|EEY24154.1| response regulator receiver [Brucella sp. F5/99]
 gi|262551142|gb|EEZ07303.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|264659379|gb|EEZ29640.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
          Length = 227

 Score =  274 bits (700), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 134/225 (59%), Positives = 167/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+  L+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHILELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|225628429|ref|ZP_03786463.1| Protein petR [Brucella ceti str. Cudo]
 gi|225616275|gb|EEH13323.1| Protein petR [Brucella ceti str. Cudo]
          Length = 258

 Score =  273 bits (699), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 134/225 (59%), Positives = 167/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 32  MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 91

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+  L+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 92  HRLPARIRERCKAPVIAVNDRPSLEHILELFQSGVDDVVRKPVHVREILARINAIRRRAG 151

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 152 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 211

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 212 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 256


>gi|161621183|ref|YP_001595069.1| protein petR [Brucella canis ATCC 23365]
 gi|254702385|ref|ZP_05164213.1| protein petR [Brucella suis bv. 3 str. 686]
 gi|260568713|ref|ZP_05839182.1| response regulator receiver [Brucella suis bv. 4 str. 40]
 gi|261752947|ref|ZP_05996656.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|161337994|gb|ABX64298.1| Protein petR [Brucella canis ATCC 23365]
 gi|260155378|gb|EEW90459.1| response regulator receiver [Brucella suis bv. 4 str. 40]
 gi|261742700|gb|EEY30626.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
          Length = 227

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 134/225 (59%), Positives = 167/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + G IRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGSIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|254731635|ref|ZP_05190213.1| Protein petR [Brucella abortus bv. 4 str. 292]
 gi|260759394|ref|ZP_05871742.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260669712|gb|EEX56652.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
          Length = 227

 Score =  272 bits (695), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 134/225 (59%), Positives = 167/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFD +DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDLIDSKRFLGYCIN 225


>gi|148558321|ref|YP_001258005.1| response regulator receiver [Brucella ovis ATCC 25840]
 gi|189036229|sp|A5VW00|FTCR_BRUO2 RecName: Full=Flagellar transcriptional regulator ftcR
 gi|148369606|gb|ABQ62478.1| response regulator receiver:Transcriptional regulatory protein, C
           terminal domain [Brucella ovis ATCC 25840]
          Length = 227

 Score =  272 bits (695), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 133/225 (59%), Positives = 166/225 (73%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F  GVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQFGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FP PRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPFPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|256059803|ref|ZP_05449998.1| response regulator receiver [Brucella neotomae 5K33]
 gi|261323783|ref|ZP_05962980.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261299763|gb|EEY03260.1| two component transcriptional regulator [Brucella neotomae 5K33]
          Length = 227

 Score =  271 bits (693), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 133/225 (59%), Positives = 166/225 (73%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F  GVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQFGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIF A
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFRA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|323136985|ref|ZP_08072065.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322397746|gb|EFY00268.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 237

 Score =  265 bits (676), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 126/218 (57%), Positives = 166/218 (76%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           MF+++D+R LV +GY   FG +G++  GF   +F +W+ S+   DV AIEAFLIG+  + 
Sbjct: 1   MFIIVDERDLVTNGYACRFGQEGIASAGFRPGQFRDWVDSAVEGDVQAIEAFLIGECPER 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+PR+IR  SQ P+I +++ PSL+ TL  F +GVDDVV KP+H REILARV AI RR +
Sbjct: 61  EEIPRLIRRRSQAPVIAMNEAPSLEQTLGLFSAGVDDVVRKPVHVREILARVHAIRRRAE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              + A  G I+VF +G DP V GEV  LPRRERRILEYL+ NRG+R+ K+QIF+A+YGL
Sbjct: 121 ARQDCAAVGGIQVFFNGSDPVVNGEVLALPRRERRILEYLVVNRGRRLTKSQIFNAVYGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD+ VEENV+ESHISKLRKKLR +LG+DP++S+RFLGY
Sbjct: 181 FDDDVEENVIESHISKLRKKLRARLGYDPIESQRFLGY 218


>gi|90418366|ref|ZP_01226278.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1]
 gi|90338038|gb|EAS51689.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1]
          Length = 223

 Score =  264 bits (674), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 128/220 (58%), Positives = 167/220 (75%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LV DGY ++FG +GVS  GF + EF +W++++   D+SA+EAFL+G  +  
Sbjct: 1   MIVVVDNRELVTDGYESMFGREGVSAAGFKADEFRDWVETAPESDLSAVEAFLLGDFDDR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              PR+IRA S+ P+I +S+  +L  TLD F +GVDDVV KP+H +EILARV AI RR +
Sbjct: 61  TICPRLIRARSKAPMIALSEGRNLDGTLDLFAAGVDDVVAKPVHVKEILARVGAIRRRNE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G I V+ DGRD EV G+   LPRRERRILEYL+ANRG+RV+K Q+FSAIYG+
Sbjct: 121 TEDARTVVGEISVYQDGRDAEVAGKPMALPRRERRILEYLVANRGRRVSKQQLFSAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FDE VEENV+ESHISKLRKKL+ +LG+DPV SKR+LGY I
Sbjct: 181 FDENVEENVIESHISKLRKKLKMRLGYDPVSSKRYLGYGI 220


>gi|209547945|ref|YP_002279862.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533701|gb|ACI53636.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 223

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 155/222 (69%), Positives = 180/222 (81%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LVKDGY +LFG +G+   GF+  EF EW+Q++A  D++A+EAFLIG+G++ 
Sbjct: 1   MIVVVDERELVKDGYTSLFGREGIPSTGFDPAEFGEWVQTAADSDIAAVEAFLIGQGQRS 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LELPR IR  S  P+I +SD PSL+ TL  FD GVDDVV KP+H REILAR AAI RRLK
Sbjct: 61  LELPRAIRDRSMAPVIAVSDQPSLENTLALFDCGVDDVVRKPVHPREILARAAAIRRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  E G IRVFSDGRDPE+ GEVF LPRRERRILEYL+ANRG+RV KTQIF+AIYG+
Sbjct: 121 AIANYTEIGGIRVFSDGRDPEINGEVFALPRRERRILEYLIANRGRRVTKTQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLGY IDW
Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLGYCIDW 222


>gi|217976239|ref|YP_002360386.1| putative two component transcriptional regulator, winged helix
           family [Methylocella silvestris BL2]
 gi|217501615|gb|ACK49024.1| putative two component transcriptional regulator, winged helix
           family [Methylocella silvestris BL2]
          Length = 224

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 127/221 (57%), Positives = 163/221 (73%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V+ID+R +V  GY + FG++GVS  GF   EF EW+ + A  D+ A+EAFL+G     
Sbjct: 1   MLVIIDEREIVTAGYASRFGNEGVSSAGFCPEEFREWVATVAEGDLGAVEAFLLGDCRDR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              P++I+  S+ P+I ++D P L+ TLD F +GVDDVV KPIH REILARV AI RR  
Sbjct: 61  QAYPKMIKERSRAPVIAMNDAPCLEQTLDLFAAGVDDVVRKPIHVREILARVGAIKRRCD 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  +    G +RVF DGRDPE+ G V  LPRRERRILEYL+ NRG+RV+K QIF++IYG+
Sbjct: 121 IEVDSVALGDLRVFFDGRDPELNGRVLALPRRERRILEYLVNNRGRRVSKAQIFNSIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FDE VEENVVESHISKLRKKLR +LG+DP++S R+LGY +D
Sbjct: 181 FDENVEENVVESHISKLRKKLRRQLGYDPINSVRYLGYRLD 221


>gi|222084884|ref|YP_002543413.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722332|gb|ACM25488.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 223

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 182/223 (81%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LVKDGY +LFG +G+   GF+  EF EW+ ++A  D++A+EAFLIG+G+ V
Sbjct: 1   MIVVVDERELVKDGYTSLFGREGIPSTGFDPREFGEWVVTAADGDIAAVEAFLIGQGQHV 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ELPR IR  S  P+I +SD PSL++TL  FD GVDDVV KP+H REILAR AAI RRLK
Sbjct: 61  HELPRAIRDRSAAPVIAVSDQPSLESTLALFDCGVDDVVRKPVHPREILARAAAIRRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N  + GPIRVFSDGRDPEV GEVF LPRRERRILEYL++NRG+RV KTQIF+AIYG+
Sbjct: 121 AISNYTDIGPIRVFSDGRDPEVNGEVFALPRRERRILEYLISNRGRRVTKTQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDE VEENVVESHISKLRKKLR +LGFDPVDSKRFLGY IDW 
Sbjct: 181 FDEEVEENVVESHISKLRKKLRKRLGFDPVDSKRFLGYCIDWT 223


>gi|319898655|ref|YP_004158748.1| flagellar transcriptional regulator ftcR [Bartonella clarridgeiae
           73]
 gi|319402619|emb|CBI76164.1| Flagellar transcriptional regulator ftcR [Bartonella clarridgeiae
           73]
          Length = 229

 Score =  261 bits (666), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 124/224 (55%), Positives = 167/224 (74%), Gaps = 4/224 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR LV DGY  LF  +GV+  G    +F EW+ +++  ++S+IEA L+GK E  
Sbjct: 1   MIVVVDDRKLVTDGYATLFSREGVAATGLPPSDFSEWISTASDNEISSIEAILLGKCENQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +ELP+ IR +S  P++ +++   L  T++ F SG+DDV+ KPIH REILAR+ AI RR+ 
Sbjct: 61  IELPKEIRNYSSAPILAMTETNILSHTIELFQSGMDDVLRKPIHVREILARIGAIRRRIG 120

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    N   E GPI VF+DGRDP++ G    LPRRERRILEYL+AN GKRV KTQIF+A
Sbjct: 121 NNIRGINTAIEVGPISVFNDGRDPQINGIELALPRRERRILEYLIANAGKRVNKTQIFNA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG+FD+A+EENV+ESHISKLRKKL+ K+G+D +DSKRFLGYS+
Sbjct: 181 VYGIFDDAIEENVIESHISKLRKKLKAKIGYDIIDSKRFLGYSL 224


>gi|182680287|ref|YP_001834433.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636170|gb|ACB96944.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 225

 Score =  260 bits (665), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 165/221 (74%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V+ID+R +V  GY++ F ++G+S  GF   EF +W++S+A  D+ A+EAFL+G  ++ 
Sbjct: 1   MLVIIDEREIVTSGYVSRFANEGISSTGFRPEEFGDWVRSAAETDLFAVEAFLLGDCQER 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP+IIR  S  PLI ++D  SL+ TL  F +G DDVV KP+H REILARV AI RR +
Sbjct: 61  QGLPKIIRERSPAPLIALNDTASLEQTLSLFAAGADDVVRKPVHVREILARVGAIKRRHE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G +RVF DGRDPEV+G    LPRRERRILEYL+ NRG+RV+KTQIF++IYG+
Sbjct: 121 ERQDSTLIGDLRVFFDGRDPEVKGSTLQLPRRERRILEYLVNNRGRRVSKTQIFNSIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FDE +EENVVESHISKLRKKLR +LG+DP++S R+LGY  +
Sbjct: 181 FDEKIEENVVESHISKLRKKLRRQLGYDPINSVRYLGYCFE 221


>gi|86356329|ref|YP_468221.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86280431|gb|ABC89494.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 223

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 153/222 (68%), Positives = 179/222 (80%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LVKDGY +LFG +G+   GF+  EF EW+Q++A  D++A+EAFLIG+G++ 
Sbjct: 1   MIVVVDERELVKDGYTSLFGREGIPSTGFDPSEFGEWVQTAADSDIAAVEAFLIGQGQRS 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ELPR IR  S  P+I +SD PSL+ TL  FD GVDDVV KP+H REILAR AAI RRLK
Sbjct: 61  FELPRAIRDRSMAPVIAVSDQPSLENTLALFDCGVDDVVRKPVHPREILARAAAIRRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  + G IRVFSDGRDPE+ GEVF LPRRERRILEYL+ANRG+RV KTQIF+AIYG+
Sbjct: 121 AIANYTDVGGIRVFSDGRDPEINGEVFALPRRERRILEYLIANRGRRVTKTQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLGY IDW
Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLGYCIDW 222


>gi|190890381|ref|YP_001976923.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|218461960|ref|ZP_03502051.1| probable two-component response regulator protein [Rhizobium etli
           Kim 5]
 gi|218509842|ref|ZP_03507720.1| probable two-component response regulator protein [Rhizobium etli
           Brasil 5]
 gi|218674740|ref|ZP_03524409.1| probable two-component response regulator protein [Rhizobium etli
           GR56]
 gi|190695660|gb|ACE89745.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 223

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 153/222 (68%), Positives = 180/222 (81%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LVKDGY +LFG +G+   GF+  EF +W+Q++A  D++A+EAFLIG+G++ 
Sbjct: 1   MIVVVDERELVKDGYTSLFGREGIPSTGFDPSEFGDWVQTAADSDIAAVEAFLIGQGQRS 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LELPR IR  S  P+I +SD PSL+ TL  FD GVDDVV KP+H REILAR AAI RRLK
Sbjct: 61  LELPRAIRDRSMAPVIAVSDQPSLENTLALFDCGVDDVVRKPVHPREILARAAAIRRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  + G IRVFSDGRDPE+ GEVF LPRRERRILEYL+ANRG+RV KTQIF+AIYG+
Sbjct: 121 AIANYTDIGGIRVFSDGRDPEINGEVFALPRRERRILEYLIANRGRRVTKTQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLGY IDW
Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLGYCIDW 222


>gi|163758030|ref|ZP_02165118.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162284319|gb|EDQ34602.1| putative transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 200

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/195 (71%), Positives = 164/195 (84%)

Query: 28  GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87
           GF+S EF EW+ ++A  D+ A+EAFLIG+GE  L+LPR IR  SQ P+I +SD PSL++T
Sbjct: 5   GFDSFEFGEWVNTAADSDLDAVEAFLIGQGELTLDLPRAIRDRSQAPVIAVSDTPSLEST 64

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF 147
           L FFDSGVDDVV KP+H REI+AR AAI RRLK  +N  + GPIRVFSDGRDPE++G +F
Sbjct: 65  LAFFDSGVDDVVRKPVHPREIMARAAAIRRRLKALSNHTDVGPIRVFSDGRDPELEGRIF 124

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            LPRRERRILEYL+ANRG+RV K QIF+AIYG+FDE VEENVVESHISKLRKKLR +LGF
Sbjct: 125 ALPRRERRILEYLVANRGRRVTKQQIFNAIYGIFDEDVEENVVESHISKLRKKLRKRLGF 184

Query: 208 DPVDSKRFLGYSIDW 222
           DP+DSKRFLGY IDW
Sbjct: 185 DPIDSKRFLGYLIDW 199


>gi|116250499|ref|YP_766337.1| two-component regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|241203123|ref|YP_002974219.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|115255147|emb|CAK06221.1| regulator of flagellar and motility genes [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|240857013|gb|ACS54680.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|262283890|gb|ACY40753.1| Rem [Rhizobium leguminosarum bv. viciae]
          Length = 223

 Score =  258 bits (659), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 153/222 (68%), Positives = 178/222 (80%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LVKDGY +LFG +G+   GF+  EF EW+Q++A  D++A+EAFLIG+G++ 
Sbjct: 1   MIVVVDERELVKDGYTSLFGREGIPSTGFDPAEFGEWVQTAADSDIAAVEAFLIGQGQRN 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ELPR IR  S  P+I +SD  SL+ TL  FD GVDDVV KP+H REILAR AAI RRLK
Sbjct: 61  FELPRAIRDRSMAPVIAVSDQHSLENTLALFDCGVDDVVRKPVHPREILARAAAIRRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  E G IRVFSDGRDPE+ GEVF LPRRERRILEYL+ANRG+RV KTQIF+AIYG+
Sbjct: 121 AITNYTEIGGIRVFSDGRDPEINGEVFALPRRERRILEYLIANRGRRVTKTQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLGY IDW
Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLGYCIDW 222


>gi|114706629|ref|ZP_01439530.1| two-component response regulator [Fulvimarina pelagi HTCC2506]
 gi|114538021|gb|EAU41144.1| two-component response regulator [Fulvimarina pelagi HTCC2506]
          Length = 223

 Score =  257 bits (657), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 122/220 (55%), Positives = 164/220 (74%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LV DGY +LF  +GVS  GF++ EF++W+ ++   D+SA+E FL+G  ++ 
Sbjct: 1   MIVIVDNRELVTDGYQSLFAREGVSAAGFSAEEFQDWISTAPEADLSAVEGFLLGDFDER 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R IR+ S+ P+I +S+  +L  TLD F +G+DDVV KP+H +EILARV AI RR  
Sbjct: 61  ASSTRTIRSRSKAPMIALSESRNLDNTLDLFAAGIDDVVAKPVHVKEILARVGAIRRRES 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  TG I ++ DGRD EV G+   LPRRERRILEYL+AN+G+RV+K Q+FSAIYG+
Sbjct: 121 SEAAKTVTGEIAIYQDGRDAEVAGKPLALPRRERRILEYLVANKGRRVSKQQLFSAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FDE VEENV+ESHISKLRKKL+ +LG+DPV SKR+LGY I
Sbjct: 181 FDENVEENVIESHISKLRKKLKMRLGYDPVSSKRYLGYGI 220


>gi|312115043|ref|YP_004012639.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220172|gb|ADP71540.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 224

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/221 (53%), Positives = 162/221 (73%), Gaps = 1/221 (0%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR  V +GY A F  +GVS  G    +F +W+ ++   D+ A+EAFL+G  +  
Sbjct: 1   MIVIVDDRETVLNGYAAWFCREGVSATGLAPHDFRQWVNTAPEPDIDAVEAFLLGDFQNR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+P  I++ S   +I +++  SL  TLD F +GVDDVV KP+H REILAR+ AI RR +
Sbjct: 61  EEVPLKIKSRSGAAVIAMNETKSLNDTLDLFAAGVDDVVRKPVHVREILARIRAISRRSQ 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + ++  +G IRVFSDGRDPE+ GE  PLPRRERRILEYLM N+G+RV K+QIF+ +YG
Sbjct: 121 QEAQSQPLSGRIRVFSDGRDPEIDGEPLPLPRRERRILEYLMTNKGRRVTKSQIFNFVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           LFD+ ++ENV+ESHISKLRK+LR +LG DP+DS+RFLGY +
Sbjct: 181 LFDDGIDENVIESHISKLRKRLRQRLGSDPIDSQRFLGYRL 221


>gi|110632641|ref|YP_672849.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110283625|gb|ABG61684.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 223

 Score =  244 bits (624), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 128/221 (57%), Positives = 166/221 (75%), Gaps = 1/221 (0%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LV  G+ +LF  +GV+  GF   EF +W++S+  ED+S++ AFL+G+    
Sbjct: 1   MIVVVDERELVTKGFTSLFNREGVATAGFRPSEFNDWVESAPDEDLSSVSAFLLGRCRTP 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R IR  ++ PLI +++  SL+ TL  F+ GVDDVV KP+H  EILAR++AI RR K
Sbjct: 61  ETPARRIRDRTRAPLIALAEQHSLEDTLRLFECGVDDVVRKPVHVLEILARISAISRRAK 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + R+ E G +R+FSDGRDPE+ GE FPLPRRERRILEYL +N  +RV KTQIF+AIYG
Sbjct: 121 QQDQRSTEIGRLRIFSDGRDPEIDGEPFPLPRRERRILEYLASNSSRRVTKTQIFNAIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +FDE VEENVVESHISKLRKKLR KLGFDP+DSKR+LGY +
Sbjct: 181 IFDEEVEENVVESHISKLRKKLRVKLGFDPIDSKRYLGYQL 221


>gi|319781666|ref|YP_004141142.1| transcriptional regulator domain-containing protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317167554|gb|ADV11092.1| transcriptional regulator domain-containing protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 222

 Score =  244 bits (624), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 128/220 (58%), Positives = 163/220 (74%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LV +GY +LF  +G++  GF S EF EW+ S+A  D+ ++ AFLIG   + 
Sbjct: 1   MIVIVDERELVTEGYNSLFDREGIACAGFASGEFGEWVNSAADTDLRSVRAFLIGDCREG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              PR IR  +  P+I +S+  SL+ TL  F+SGVDDV+ KP+H REILAR+ AI RR +
Sbjct: 61  SISPRQIRDRTGAPVIALSEQHSLENTLRLFESGVDDVIRKPVHIREILARITAIRRRAQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G +R+F DGRDPE+ G+  PLPRRERRILEYL +NRG+RV KTQ+F+AIYG+
Sbjct: 121 EDVAYTEIGAMRIFMDGRDPEIDGQPLPLPRRERRILEYLASNRGRRVTKTQVFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FDE VEENVVESHISKLRKKLR KLG DP+DSKRFLGY +
Sbjct: 181 FDEEVEENVVESHISKLRKKLREKLGTDPIDSKRFLGYRL 220


>gi|260466604|ref|ZP_05812792.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259029610|gb|EEW30898.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 222

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 129/220 (58%), Positives = 162/220 (73%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LV +GY +LF  +GV+  GF   EF EW+ S+A  D+ ++ AFLIG   + 
Sbjct: 1   MIVIVDERELVTEGYNSLFDREGVACAGFAPGEFGEWVNSAADADLRSVRAFLIGDCREG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              PR IR  +  P+I +S+  SL+ TL  F+SGVDDVV KP+H REILAR+ AI RR +
Sbjct: 61  SISPRQIRDRTGAPVIALSEQHSLENTLRLFESGVDDVVRKPVHIREILARITAIRRRAQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G +R+F DGRDPE+ G+  PLPRRERRILEYL +NRG+RV KTQ+F+AIYG+
Sbjct: 121 EDVAYTEIGAMRIFMDGRDPEIDGQPLPLPRRERRILEYLASNRGRRVTKTQVFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FDE VEENVVESHISKLRKKLR KLG DP+DSKRFLGY +
Sbjct: 181 FDEEVEENVVESHISKLRKKLREKLGTDPIDSKRFLGYRL 220


>gi|296445183|ref|ZP_06887143.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296257357|gb|EFH04424.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 222

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/220 (58%), Positives = 169/220 (76%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           MF+++D+R LV  GY   FG +G+S  GF S +F +W+ S+   DV+A+EAFLIG+  + 
Sbjct: 1   MFIIVDERELVTSGYARHFGQEGISSAGFCSGQFLDWVGSAVETDVAAVEAFLIGECPER 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ELP+IIR  SQ P+I +++ PSL+ TL  F +GVDDVV KPIH +EILARV AI RR +
Sbjct: 61  EELPKIIRKRSQAPVIAMNEAPSLEQTLGLFTAGVDDVVRKPIHVKEILARVCAIRRRAE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  + A  GP++VF DGRDP V GE   LPRRERRILEY + NRG+R+ K+QIF+A+YGL
Sbjct: 121 IRRDYAMVGPMQVFFDGRDPLVCGEPLALPRRERRILEYFVMNRGRRLTKSQIFNAVYGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD+ VEENVVESH+SKLRKKLR +LG+DP+DS+RFLGY +
Sbjct: 181 FDDVVEENVVESHVSKLRKKLRLRLGYDPIDSQRFLGYML 220


>gi|222147588|ref|YP_002548545.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221734576|gb|ACM35539.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 223

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 150/223 (67%), Positives = 182/223 (81%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LVK+GY +LFG +G+   GF+ +EF EW+ S+A  DV+A+EAFL+G+G++ 
Sbjct: 1   MIVVVDERELVKNGYTSLFGREGIPSTGFDPIEFGEWVASAADSDVAAVEAFLLGQGDRT 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +LPR IR  +  P+I +SD PSL+ TL  FDSGVDDVV KP+H REILAR AAI RRLK
Sbjct: 61  GDLPRAIRDRTTAPVIAVSDQPSLEATLALFDSGVDDVVRKPVHPREILARAAAIRRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  E G IRV+SDGRDPE+ GE+FPLPRRERRILEYL+ANRG+RV+K+QIF+AIYG+
Sbjct: 121 AVANYTEIGAIRVYSDGRDPEIGGEIFPLPRRERRILEYLVANRGRRVSKSQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLGY IDW 
Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLGYCIDWK 223


>gi|13472591|ref|NP_104158.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14023337|dbj|BAB49944.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 222

 Score =  242 bits (617), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 128/220 (58%), Positives = 160/220 (72%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LV +GY +LF  +GV+  GF   EF EW+ S+A  D+ ++ AFLIG     
Sbjct: 1   MIVIVDERELVTEGYNSLFDREGVACAGFAPGEFGEWVNSAADTDLRSVRAFLIGDCRDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              PR IR  +  P+I +S+  SL+ TL  F+SGVDDV+ KP+H REILAR+ AI RR  
Sbjct: 61  AISPRQIRDRTGAPVIALSEQHSLENTLRLFESGVDDVIRKPVHIREILARITAIRRRAH 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G +R+F DGRDPE+ G+  PLPRRERRILEYL +NRG+RV KTQ+F+AIYG+
Sbjct: 121 EDVAYTEIGAMRIFMDGRDPEIDGQPLPLPRRERRILEYLASNRGRRVTKTQVFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FDE VEENVVESHISKLRKKLR KLG DP+DSKRFLGY +
Sbjct: 181 FDEEVEENVVESHISKLRKKLREKLGTDPIDSKRFLGYRL 220


>gi|158422243|ref|YP_001523535.1| two-component response regulator [Azorhizobium caulinodans ORS 571]
 gi|158329132|dbj|BAF86617.1| two-component response regulator [Azorhizobium caulinodans ORS 571]
          Length = 222

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/219 (51%), Positives = 157/219 (71%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M+V++D RA V DGY++ F  +G S  G    EF+EWL +++ +D+ A++ FL+G+ +  
Sbjct: 1   MYVVVDQRATVTDGYVSSFSREGFSSLGLGCNEFKEWLNTASDQDIGAVQGFLLGEFDNR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              P +IR HS+ P+I + D  SLQ TL+ F +G+DDVV KP+H REI+AR  A++RR+ 
Sbjct: 61  PAFPEMIRTHSRAPIIALEDVRSLQQTLELFTAGIDDVVRKPVHVREIVARSDAVWRRVN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +   A  G +RVF DGRDPEV G   PLPRRER ILEYL+ N  +RV KTQIF+ IYG+
Sbjct: 121 SAAGPATNGRLRVFFDGRDPEVDGVPLPLPRRERHILEYLVKNSRRRVTKTQIFNTIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           F++ V+E+V+E H+SKLRKKLR KLG D +D+KR++GY 
Sbjct: 181 FNDDVDESVIEGHMSKLRKKLRMKLGEDVIDAKRYIGYQ 219


>gi|328545463|ref|YP_004305572.1| Response regulators consisting of a chemotaxis protein CheY domain
           and a winged-helix DNA-binding domain [polymorphum
           gilvum SL003B-26A1]
 gi|326415204|gb|ADZ72267.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 242

 Score =  237 bits (605), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 114/221 (51%), Positives = 155/221 (70%), Gaps = 1/221 (0%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           MFV++DDR +V  GY + F  +G +       E  EW+ +++ +D++++EA L+G  E+ 
Sbjct: 1   MFVIVDDREIVTSGYTSGFEREGFACMALLPSELAEWINAASEDDLASVEAVLLGDCEER 60

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              P IIR    Q P+I + + P L+ TLD F  GVDDV+ KP+H REILARV AI RR 
Sbjct: 61  PGFPPIIRTRCGQTPIIALEEKPCLEQTLDLFACGVDDVLRKPVHVREILARVGAIRRRT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  + G IRVF DGRDP V GEVF LPRRERRILEY+  N G+RV KTQI++A+YG
Sbjct: 121 MAEADNLDVGRIRVFFDGRDPIVGGEVFELPRRERRILEYMARNHGRRVTKTQIYNAVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L +E V+E VVESH+SKLRKKL+ +LG+DP++SKR++GY +
Sbjct: 181 LMNEEVDECVVESHVSKLRKKLKMRLGYDPIESKRYIGYML 221


>gi|115523206|ref|YP_780117.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517153|gb|ABJ05137.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 237

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/221 (52%), Positives = 153/221 (69%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           MFV+IDDR  V DGY A F  +GV   GF+S +F +WL+ +   D+ AI AFL+G     
Sbjct: 1   MFVVIDDRQGVIDGYAAGFNREGVVSIGFSSTDFRDWLECAVSNDLGAIGAFLLGDCVDR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR  S+ P+I +S    L+ T++ F++GVDDVV+ P+H REILAR A I RR  
Sbjct: 61  TSLPLSIRNRSRAPIIALSGLKHLKNTIELFEAGVDDVVHAPVHVREILARTAVIRRRTV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S     T  I VF DGRDPE+ G    LPRRE RILEY ++++GK + KTQ+F++IYGL
Sbjct: 121 GSAEPTPTSVIHVFLDGRDPEIAGRTLALPRRELRILEYFVSHQGKWLTKTQLFNSIYGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD + +ENV+ESH+SKLRKKLR  LG+DP++SKR++GY +D
Sbjct: 181 FDSSFDENVIESHVSKLRKKLRGHLGYDPIESKRYMGYRLD 221


>gi|319403977|emb|CBI77565.1| Flagellar transcriptional regulator ftcR [Bartonella rochalimae
           ATCC BAA-1498]
          Length = 231

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 125/224 (55%), Positives = 168/224 (75%), Gaps = 4/224 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR LV DGY  LF  +GV+  G    +F +W+ +++  ++S++EA L+GK E  
Sbjct: 1   MIVVVDDRKLVTDGYATLFSREGVAATGLAPSDFSQWISTASHNEISSLEAVLLGKCENQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +ELP+ IR +S  P++ +++   L  T++ F SG+DDV+ KPIH REILAR+AAI RR  
Sbjct: 61  IELPKKIRNYSSTPILALTETNILDHTIELFQSGIDDVIRKPIHVREILARIAAIRRRIG 120

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++ +N   E GPI VF+DGRDP++ G   PLPRRERRILEYL+AN GKRV KTQIF+A
Sbjct: 121 NDIRGANTAVEVGPISVFNDGRDPQINGVNLPLPRRERRILEYLIANAGKRVNKTQIFNA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG+FDE +EENVVESHISKLRKKL+ KL +D +DSKRFLGYS+
Sbjct: 181 VYGIFDETIEENVVESHISKLRKKLKAKLNYDIIDSKRFLGYSL 224


>gi|319406993|emb|CBI80630.1| Flagellar transcriptional regulator ftcR [Bartonella sp. 1-1C]
          Length = 231

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 165/224 (73%), Gaps = 4/224 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR LV DGY  LF  +GV+  G    +F +W+ +++  ++S++EA L+GK E  
Sbjct: 1   MIVVVDDRKLVTDGYATLFSREGVAATGLAPSDFSQWISTASHNEISSLEAVLLGKCENQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---- 116
           +ELP+ IR +S  P++ +++   L  T++ F SG+DDV+ KPIH REILAR+AAI     
Sbjct: 61  IELPKKIRNYSSTPILALTETNILDHTIELFQSGIDDVIRKPIHVREILARIAAIRRRIG 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++ +N   E GPI VF+DGRDP++ G   PLPRRERRILEYL AN GKRV KTQIF+A
Sbjct: 121 NNIRGANTAVEVGPISVFNDGRDPQINGIDLPLPRRERRILEYLAANAGKRVNKTQIFNA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG+FDE +EENVVESHISKLRKKL+ KL +D +DSKRFLGYS+
Sbjct: 181 VYGIFDETIEENVVESHISKLRKKLKAKLNYDIIDSKRFLGYSL 224


>gi|319405420|emb|CBI79039.1| Flagellar transcriptional regulator ftcR [Bartonella sp. AR 15-3]
          Length = 231

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 169/224 (75%), Gaps = 4/224 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR LV DGY  LF  +GV+  G    +F EW+ +++  ++S+IEA L+GK +  
Sbjct: 1   MIVVVDDRKLVTDGYATLFSREGVAATGILPSDFSEWISTASNNEISSIEAILLGKCKNQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +ELP+ IR +S  P++ +++  +L  T++ F SG+DDV+ KPIH REILAR+AAI RR  
Sbjct: 61  IELPKEIRNYSLTPILALTETNTLDHTIELFQSGIDDVIRKPIHVREILARIAAIRRRIG 120

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++ +N   E GPI +F+DGRDP++ G  FPLPRRERRILEYL  N G+RV KTQIF+A
Sbjct: 121 SDIRATNTAIEIGPISIFNDGRDPQINGINFPLPRRERRILEYLTLNPGRRVNKTQIFNA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG+FD+ +EENV+ESHISKLRKKL+ KLG+D +DSKRFLGYS+
Sbjct: 181 VYGIFDDTIEENVIESHISKLRKKLKAKLGYDIIDSKRFLGYSL 224


>gi|319409170|emb|CBI82814.1| Flagellar transcriptional regulator ftcR [Bartonella
           schoenbuchensis R1]
          Length = 228

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 125/224 (55%), Positives = 169/224 (75%), Gaps = 4/224 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR LV +GY ALF  +GV+  G    +F EW+ ++   +V++IEA L+GK E  
Sbjct: 1   MIVVVDDRKLVTEGYSALFAREGVATTGLLPSDFSEWISTAPEHEVNSIEAILLGKCENQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +ELP+ IR +S  P++ +++   L  T++ F +G+DDV+ KPIH REILAR+AAI RR  
Sbjct: 61  IELPKEIRTYSSAPILAMTETNVLDHTIELFQAGIDDVLRKPIHVREILARIAAIRRRIG 120

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++ +N   + GPI VF+DGRDP + G  FPLPRRERRILEYL+ N GKRV KTQIF++
Sbjct: 121 GDVRSANAAIKIGPISVFNDGRDPRINGIDFPLPRRERRILEYLVTNYGKRVNKTQIFNS 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           IYG+FD+A+EENVVESHISKLRKKL+ K+G+D +DSKRFLGYS+
Sbjct: 181 IYGVFDDAIEENVVESHISKLRKKLKLKIGYDVIDSKRFLGYSL 224


>gi|170741404|ref|YP_001770059.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168195678|gb|ACA17625.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 224

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 111/221 (50%), Positives = 153/221 (69%), Gaps = 2/221 (0%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M++ +DDR  V  GY A F  +GVS  G    EF+ W  +++  D+ AI+ FL+G     
Sbjct: 1   MYIFVDDRPTVTSGYAASFEREGVSSLGLMGEEFKNWFSAASACDLDAIQGFLLGDFADR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +    +IR  S+ P+I +SD  +L+TTL  F +G+DDV+ KP+H REILAR  AI+RR+ 
Sbjct: 61  MACASLIRRQSRAPIIALSDVRTLETTLQLFTAGIDDVLGKPVHVREILARSEAIWRRVN 120

Query: 121 VSNNRA-ETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                A E G  ++V  DGRDPEV GE  PLPRRER ILEYL+ NRG+R+ K QIF+AIY
Sbjct: 121 GETQPAGEQGERLKVHFDGRDPEVDGETLPLPRRERSILEYLVRNRGRRLTKAQIFNAIY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G++   VEE+VVE H+SKLRKKLR +LG+DP+++KR++GY+
Sbjct: 181 GVYSNEVEESVVEGHVSKLRKKLRERLGYDPIEAKRYIGYT 221


>gi|90422637|ref|YP_531007.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104651|gb|ABD86688.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 237

 Score =  227 bits (578), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 111/221 (50%), Positives = 153/221 (69%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           MFV+IDDR  V  GY   F  +G+   GF+S +F +WL+ +   D+ AI AFL+G     
Sbjct: 1   MFVVIDDRKGVIQGYADGFDREGIVSIGFSSTDFRDWLEGALGNDLGAIGAFLLGDCADR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + LP  IR   + P+I ++    L++T++ F++GVDDVVN P+H REILAR A I RR  
Sbjct: 61  ISLPPSIRNRCRAPIIALNGLKHLKSTIELFEAGVDDVVNAPVHVREILARTAVIRRRTI 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  T  IRVF DGRDPE+ G    LPRRE RILE+L++++GK + K Q+F+AIYGL
Sbjct: 121 GPAEQTPTSVIRVFLDGRDPEIGGRTLALPRRELRILEHLVSHQGKWLTKNQMFNAIYGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD + +ENV+ESH+SKLRKKLR  LG+DP++SKR++GY +D
Sbjct: 181 FDASFDENVIESHVSKLRKKLRGHLGYDPIESKRYMGYRLD 221


>gi|300024589|ref|YP_003757200.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526410|gb|ADJ24879.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 276

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/220 (50%), Positives = 150/220 (68%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           MFV++DDR+ V  G +A F  +G++     S EF EW +S    D+S IE FLIG  E  
Sbjct: 1   MFVVLDDRSTVAGGCVACFEREGIAAVAVESHEFPEWFESVNDSDLSVIEGFLIGSVEHR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++   IR+  + PLIG+ +  +L  TL+ F  G DDV+ KP H RE+LAR  AI RR+K
Sbjct: 61  RQISSRIRSRCRAPLIGLIEARALNETLELFSLGFDDVLAKPFHVREVLARSGAIRRRMK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++    +   IR+F DGRDP V GEV  LPRRERRILE L+ +R  RV KTQIF+ +YG+
Sbjct: 121 MAEQCVDIAGIRIFFDGRDPLVNGEVLSLPRRERRILECLVLSRNTRVTKTQIFNRVYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F++ + ENV+ESHIS+LRK+L+ +LG DP+DS+RFLGY +
Sbjct: 181 FNDEIHENVIESHISRLRKRLKQRLGHDPIDSQRFLGYRL 220


>gi|254473390|ref|ZP_05086787.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211957506|gb|EEA92709.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 224

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/222 (49%), Positives = 159/222 (71%), Gaps = 1/222 (0%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M++++D++ LV DGY + F  +G+S  GF+  +F +WL ++   +  A+EA LIG+  + 
Sbjct: 1   MYLIVDEQQLVTDGYASGFEREGISTSGFSPDDFRDWLNTAPDTEFEAVEAILIGEIGER 60

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +  +IIR   SQ P++ ++  P L+ TL  F +GVDDVV KP+H +EILARV AI RR 
Sbjct: 61  DKFSQIIRRRCSQKPVLVLNSSPVLEQTLKLFAAGVDDVVRKPVHPQEILARVNAIKRRT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   E G + V+ DGRDPE++G    LPRRERRILEYL  N G+R+ KTQI++ +YG
Sbjct: 121 TNQSINVELGDLTVYFDGRDPEIKGNTLALPRRERRILEYLAQNNGRRLTKTQIYNFVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +F+  V+ENV+ESHISKLRKKLR+++G+DP+DSKR+LGY I+
Sbjct: 181 IFESEVDENVIESHISKLRKKLRSQMGYDPIDSKRYLGYIIN 222


>gi|218682134|ref|ZP_03529735.1| putative two-component regulator transcriptional regulatory protein
           [Rhizobium etli CIAT 894]
          Length = 182

 Score =  222 bits (565), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 117/182 (64%), Positives = 142/182 (78%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LVKDGY +LFG +G+   GF+  EF EW+Q++A  D++A+EAFLIG+G++ 
Sbjct: 1   MIVVVDERELVKDGYTSLFGREGIPSTGFDPTEFGEWVQTAADSDIAAVEAFLIGQGQRN 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ELPR IR  S  P+I +SD  SL+ TL  FD GVDDVV KP+H REILAR AAI RRLK
Sbjct: 61  YELPRAIRDRSMAPVIAVSDQHSLENTLALFDCGVDDVVRKPVHPREILARAAAIRRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  E G IRVFSDGRDPE+ GEVF LPRRERRILEYL+ANRG+RV KTQIF+AIYG+
Sbjct: 121 AIANYTEIGGIRVFSDGRDPEINGEVFALPRRERRILEYLIANRGRRVTKTQIFNAIYGI 180

Query: 181 FD 182
           FD
Sbjct: 181 FD 182


>gi|170748111|ref|YP_001754371.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654633|gb|ACB23688.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 227

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 157/224 (70%), Gaps = 5/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M+V++D+R +V DGY+A F  +G++  G  + +FE+WLQ++   D+ A++ FL+G   + 
Sbjct: 1   MYVIVDERPIVTDGYVANFNREGITSVGLLADDFEDWLQTAPATDLEAVQGFLLGDCAQR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +LP +I+  S+ P+I + +   L  TL+ F +G+DDVV KP+H REILAR  A++RR +
Sbjct: 61  SDLPELIQKRSRAPIIAMIETRCLNETLNLFGAGIDDVVRKPVHVREILARTEAVWRRSQ 120

Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  T       ++V+ DGRDP++ GE   LPRRER+ILE+L+ NRG+R+ K Q+F+
Sbjct: 121 RETAKDPTVVDRSARLKVYFDGRDPDIDGEKMTLPRRERQILEFLVRNRGRRMTKEQVFN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           A+YG F   V+E+V+E HISKLRKKLR KL FDP++ +R+LGY+
Sbjct: 181 AVYGAFTSDVDESVIEGHISKLRKKLRQKLSFDPIEVRRYLGYA 224


>gi|304392494|ref|ZP_07374434.1| flagellar transcriptional regulator FtcR [Ahrensia sp. R2A130]
 gi|303295124|gb|EFL89484.1| flagellar transcriptional regulator FtcR [Ahrensia sp. R2A130]
          Length = 259

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/235 (48%), Positives = 153/235 (65%), Gaps = 12/235 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------ 54
           M V++D R LV   Y+A F  +GV+  GF   EF +W  ++ + D +AI AF+I      
Sbjct: 1   MIVVVDRRDLVTAAYVAQFAHEGVAATGFCPDEFNDWFSTADKRDTAAISAFVIDAAAII 60

Query: 55  -GKG---EKVLELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
            G G   +     P  + A      P++ + + P+L+ TL  F  GVDDVV KP+H REI
Sbjct: 61  TGDGSDADNACAKPSTLAAGVAFGKPILALLEQPALERTLALFHGGVDDVVRKPVHAREI 120

Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           LAR+A I RR K     A    ++VF+DGRDPEV GE FPLPRRE+RILEYL++   +R 
Sbjct: 121 LARLACISRRSKPEPVEASLTRVQVFADGRDPEVDGEAFPLPRREQRILEYLVSIEERRA 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +K QI++AIYG+F+  +EE V+ESHISKLRKKLR +LG+DP+DSKRFLGY +  +
Sbjct: 181 SKAQIYNAIYGIFNSDIEECVIESHISKLRKKLRGRLGYDPIDSKRFLGYRLTLD 235


>gi|121602724|ref|YP_989384.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
 gi|120614901|gb|ABM45502.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
          Length = 228

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 165/224 (73%), Gaps = 4/224 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR LV DGY  LF  +GV+  G +  +F  W+  +   +VS+IEA L+G  E  
Sbjct: 1   MIVVVDDRKLVTDGYSTLFSQEGVATTGLSPSDFSNWISKAPSSEVSSIEAVLLGDCENR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +ELP+ IR +S  P++ +++   L  T++ F +G+DDV+ KPIH REILAR+AAI RR  
Sbjct: 61  VELPKEIRFYSSAPILAMTETNFLDHTIELFQAGIDDVLRKPIHVREILARIAAIRRRIG 120

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++ ++   + GPI VF+DGRDP + G  FPLPRRERRILEYL AN G+RV KTQIF+A
Sbjct: 121 GDIRSADAAIKVGPISVFNDGRDPRINGVDFPLPRRERRILEYLAANFGRRVNKTQIFNA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG+FD+ +EENV+ESHISKLRKKL+ K+G+D +DSKRFLGYS+
Sbjct: 181 VYGVFDDVIEENVIESHISKLRKKLKLKVGYDIIDSKRFLGYSL 224


>gi|188579918|ref|YP_001923363.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179343416|gb|ACB78828.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 226

 Score =  216 bits (551), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/223 (47%), Positives = 148/223 (66%), Gaps = 4/223 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M++++D+R  V + Y+A FG +GV  +G      ++WL ++ R DV AI+ FLIG     
Sbjct: 1   MYIVVDERQSVTEQYVAGFGAEGVPAQGLAVGSMKDWLDATPRIDVEAIDGFLIGDCADR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                 IR+ S+ P+I +++  SL+ TL  F +G+DDVV KP+H REI+AR  AI RR  
Sbjct: 61  ASCTVAIRSLSRAPIIALNETRSLEQTLALFTAGIDDVVRKPVHAREIIARATAIRRRTG 120

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                A      G ++V++DGRDPE+ G    LPRRER ILEYL  NRG++V K QIF+A
Sbjct: 121 RGVEPAPAPDRAGRLKVYTDGRDPEIDGTCLILPRRERHILEYLAKNRGRQVTKGQIFTA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +YG  D +VEE+VVE HISKLRKKLR +LG+DP+++KR  GY+
Sbjct: 181 VYGDLDSSVEESVVEGHISKLRKKLRMRLGYDPIEAKRMAGYT 223


>gi|218528721|ref|YP_002419537.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|254559261|ref|YP_003066356.1| Two-component response regulator [Methylobacterium extorquens DM4]
 gi|218521024|gb|ACK81609.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|254266539|emb|CAX22303.1| Two-component response regulator [Methylobacterium extorquens DM4]
          Length = 226

 Score =  215 bits (547), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 107/223 (47%), Positives = 147/223 (65%), Gaps = 4/223 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M++++D+R  V D Y+A FG +GV  +G      ++WL ++ R DV AI+ FLIG     
Sbjct: 1   MYIVVDERQSVTDHYVAGFGAEGVEAQGLAIGSMKDWLDAAPRIDVEAIDGFLIGDCADR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                 IR+ S+ P+I +++  SL+ TL  F  G+DDVV KP+H REI+AR  AI RR  
Sbjct: 61  ASCTVAIRSLSRAPIIALNETRSLEQTLALFTVGIDDVVRKPVHVREIIARATAIRRRTG 120

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                A      G ++V++DGRDPE+ G    LPRRER ILEYL  NRG++V K QIF+A
Sbjct: 121 RGVEPAPAPDRAGRLKVYTDGRDPEIDGACLILPRRERHILEYLSKNRGRQVTKGQIFTA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +YG  D +VEE+VVE HISKLRKKLR +LG+DP+++KR  GY+
Sbjct: 181 VYGDLDTSVEESVVEGHISKLRKKLRMRLGYDPIEAKRMAGYT 223


>gi|163850116|ref|YP_001638159.1| transcriptional regulator domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|163661721|gb|ABY29088.1| transcriptional regulator domain protein [Methylobacterium
           extorquens PA1]
          Length = 226

 Score =  214 bits (546), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 107/223 (47%), Positives = 146/223 (65%), Gaps = 4/223 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M++++D+R  V D Y+A FG +GV  +G       +WL ++ R DV AI+ FLIG     
Sbjct: 1   MYIVVDERQSVTDHYVAGFGAEGVEAQGLAIGSMRDWLDAAPRIDVEAIDGFLIGDCADR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                 IR+ S+ P+I +++  SL+ TL  F  G+DDVV KP+H REI+AR  AI RR  
Sbjct: 61  ASCTVAIRSLSRAPIIALNETRSLEQTLALFTVGIDDVVRKPVHVREIIARATAIRRRTG 120

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                A      G ++V++DGRDPE+ G    LPRRER ILEYL  NRG++V K QIF+A
Sbjct: 121 RGVEPAPAPDRAGRLKVYTDGRDPEIDGACLILPRRERHILEYLSKNRGRQVTKGQIFTA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +YG  D +VEE+VVE HISKLRKKLR +LG+DP+++KR  GY+
Sbjct: 181 VYGDLDTSVEESVVEGHISKLRKKLRMRLGYDPIEAKRMAGYT 223


>gi|254502765|ref|ZP_05114916.1| Transcriptional regulatory C terminal domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222438836|gb|EEE45515.1| Transcriptional regulatory C terminal domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 261

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/221 (46%), Positives = 148/221 (66%), Gaps = 1/221 (0%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           MF+++DDR +V  GY A F  +G +       E  +WL++   +D+++++A LIG+  + 
Sbjct: 1   MFIIVDDREIVTSGYAAAFEREGYASLELLPGELPDWLETGCSQDLASVDAILIGECTER 60

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
                 IR+   +  ++ + D  SLQ TLD F +G D+V+ KP+H REI+AR     RR 
Sbjct: 61  AGFITQIRSRCPEAQIVALEDTASLQGTLDLFSAGFDEVLKKPVHVREIIARFGVFRRRA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +  +E G I VF DGRDP V G+V  LPRRERRILEYL+ N+G+RV KTQIF+A+YG
Sbjct: 121 MARDTSSEAGAIEVFFDGRDPTVGGQVMELPRRERRILEYLVKNKGRRVTKTQIFNAVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E V+E VVESHISKLRKKL+ +LGFD ++S R++GY +
Sbjct: 181 VMNEGVDECVVESHISKLRKKLKRQLGFDAIESTRYIGYML 221


>gi|240137250|ref|YP_002961719.1| Two-component response regulator [Methylobacterium extorquens AM1]
 gi|240007216|gb|ACS38442.1| Two-component response regulator [Methylobacterium extorquens AM1]
          Length = 226

 Score =  213 bits (542), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 108/225 (48%), Positives = 148/225 (65%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M++++D+R  V D Y+A FG +GV  +G       +WL ++ R DV AI+ FLIG     
Sbjct: 1   MYIVVDERQSVTDHYVAGFGAEGVEAQGLAIGSMRDWLDAAPRIDVEAIDGFLIGDCADR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                 IR+ S+ P+I +++  SL+ TL  F  G+DDVV KP+H REI+AR  AI RR  
Sbjct: 61  ASCTVAIRSLSRAPIIALNETRSLEQTLALFTVGIDDVVRKPVHVREIIARATAIRRRTG 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +RA  G ++V++DGRDPE  G    LPRRER ILEYL  NRG++V K QIF
Sbjct: 121 RGVEPVPAPDRA--GRLKVYTDGRDPETDGACLVLPRRERHILEYLSKNRGRQVTKGQIF 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +A+YG  D +VEE+VVE HISKLRKKLR +LG+DP+++KR  GY+
Sbjct: 179 TAVYGDLDTSVEESVVEGHISKLRKKLRMRLGYDPIEAKRMAGYT 223


>gi|23008928|ref|ZP_00050168.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 226

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 147/226 (65%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M+++ID+R  V D Y+A FG +GV   G  +     WL ++ R DV AI+ FLIG     
Sbjct: 1   MYIVIDERQSVTDHYVAGFGAEGVQARGLAAETMRGWLGAAPRIDVEAIDGFLIGDCADR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                 IR+ S+ P+I +++  SL+ TL  F  G+DDVV KP+H REI+AR  AI RR  
Sbjct: 61  TSCTVAIRSLSRAPIIALNETRSLEQTLALFTVGIDDVVRKPVHVREIIARATAIRRR-- 118

Query: 121 VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   AE  P       ++V++DGRDPE+ G+   LPRRER ILEYL  NRG++V K QI
Sbjct: 119 -TGRGAEPAPAPDRDGRLQVYTDGRDPEIDGDCLILPRRERDILEYLAKNRGRQVTKGQI 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           F+A+YG  D  VEE+VVE HISKLRKKLR +LG+DP+++KR  GY+
Sbjct: 178 FTAVYGNLDIDVEESVVEGHISKLRKKLRMRLGYDPIEAKRMAGYT 223


>gi|27381957|ref|NP_773486.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355127|dbj|BAC52111.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 264

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/221 (49%), Positives = 156/221 (70%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M++++DDR  V + Y+     +GVS  GF+S EF +WLQS++  D++A++AFL+G  +  
Sbjct: 9   MYIIVDDRESVTNSYVGGLVREGVSSIGFSSGEFWDWLQSASESDLAAVDAFLLGDCDAR 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LPR +R  S  P+I +S    L+ TL+ F+SGVDDVV  PIH REILAR AAI RR  
Sbjct: 69  GSLPRAMRKRSSAPIIAMSGQKMLKNTLELFESGVDDVVYVPIHLREILARTAAIARRRV 128

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R     I+VF +GRDPE+ G    LPRRE RILEY+++N GK + KTQIF+A+YG+
Sbjct: 129 GELPRPCETRIQVFFNGRDPEIAGHALTLPRRELRILEYMVSNHGKWITKTQIFNAVYGI 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           F+   +E+V+ESH+SKLRKKLR++LGFD + ++R++GY ++
Sbjct: 189 FESTFDESVIESHVSKLRKKLRDRLGFDAIVARRYVGYRLN 229


>gi|188579882|ref|YP_001923327.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179343380|gb|ACB78792.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 232

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/231 (44%), Positives = 153/231 (66%), Gaps = 14/231 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M+ L+D R  V  GY A F  +G+S       EF  WL++++R D+ AI+ FL+G  E+ 
Sbjct: 1   MYFLVDPRDTVNAGYKASFEREGISSFALMPDEFLSWLRTASRTDLEAIQGFLLGDFEER 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +IR  S+ P+I ++D  SL+ T++  ++G+DDV+ KP+H REILAR  AI+RR+ 
Sbjct: 61  AKCAGVIRKQSRAPIIALADLRSLEQTVELLEAGIDDVLPKPVHVREILARSEAIWRRVN 120

Query: 121 VSNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            +              RA+   ++VF DGRDPE+ G    LPRRER ILEYL+ NRG+R+
Sbjct: 121 GAVAGAEAAEETGGETRADR--LKVFHDGRDPEIDGVPLSLPRRERHILEYLVRNRGRRL 178

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            KTQ+F+ +YG++   VEE+V+E H+SKLRKKL  +LG DP+++KR++GY+
Sbjct: 179 TKTQVFNVVYGVYSNGVEESVIEGHVSKLRKKLAERLGHDPIEAKRYMGYT 229


>gi|163850077|ref|YP_001638120.1| transcriptional regulator domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|218528680|ref|YP_002419496.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240137210|ref|YP_002961679.1| Two-component response regulator [Methylobacterium extorquens AM1]
 gi|254559222|ref|YP_003066317.1| Two-component response regulator [Methylobacterium extorquens DM4]
 gi|163661682|gb|ABY29049.1| transcriptional regulator domain protein [Methylobacterium
           extorquens PA1]
 gi|218520983|gb|ACK81568.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240007176|gb|ACS38402.1| Two-component response regulator [Methylobacterium extorquens AM1]
 gi|254266500|emb|CAX22264.1| Two-component response regulator [Methylobacterium extorquens DM4]
          Length = 233

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/230 (43%), Positives = 153/230 (66%), Gaps = 11/230 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M+ L+D R  V  GY A F  +G+S       EF  WL++++  D+ AI+ FL+G   + 
Sbjct: 1   MYFLVDPRDTVNAGYKASFEREGISSFALMPDEFLSWLRAASPADLEAIQGFLLGDFAER 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +IR  S+ P+I ++D  SL+ T++  ++G+DDV+ KP+H REILAR  AI+RR+ 
Sbjct: 61  AKCAGVIRKQSRAPIIALADLRSLEQTVELLEAGIDDVLPKPVHVREILARSEAIWRRVN 120

Query: 121 VSNNRAET---------GP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +   +E          GP  ++VF DGRDPE+ G    LPRRER ILEYL+ NRG+R+ 
Sbjct: 121 GAVQPSEAEGETEGEARGPDRLKVFHDGRDPEIDGVPLSLPRRERHILEYLVRNRGRRLT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           KTQ+F+ +YG++   VEE+V+E H+SKLRKKL  +LG+DP+++KR++GY+
Sbjct: 181 KTQVFNVVYGVYSNGVEESVIEGHVSKLRKKLAERLGYDPIEAKRYMGYT 230


>gi|170744536|ref|YP_001773191.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198810|gb|ACA20757.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 226

 Score =  198 bits (504), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 104/223 (46%), Positives = 142/223 (63%), Gaps = 4/223 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M+++ID+R  V   Y+A F + GV     ++     WL + +R+D+  +E FLIG  +  
Sbjct: 1   MYIVIDERQGVAAEYVAGFNEHGVPSRSLDADTLRTWLDARSRDDLDRVEGFLIGDYQHR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                I+R  S+ P+I +S+  SL  TLD F +G+DDVV +P+H REILAR  AI RR+ 
Sbjct: 61  AADTAILRRLSRAPIIALSETRSLAQTLDLFTAGIDDVVRRPVHVREILARADAIRRRMN 120

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               R+    +   + V  DGRDPE+ GE   LPRRER ILEYL  NRG+ + KTQIF A
Sbjct: 121 RGEPRSAAPQQAERLVVHFDGRDPEIDGESLMLPRRERHILEYLARNRGRWLTKTQIFDA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +YG     VEE+VVE HISKLRKKLR ++G DP+++KR +GYS
Sbjct: 181 VYGDHASDVEESVVEGHISKLRKKLRQRIGRDPIEAKRMVGYS 223


>gi|118589940|ref|ZP_01547344.1| two component transcriptional regulator, winged helix family
           protein [Stappia aggregata IAM 12614]
 gi|118437437|gb|EAV44074.1| two component transcriptional regulator, winged helix family
           protein [Stappia aggregata IAM 12614]
          Length = 257

 Score =  187 bits (476), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 99/206 (48%), Positives = 144/206 (69%), Gaps = 1/206 (0%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-Q 72
           GY + F  +G +    +  E  +WL+ +  +D+ +++A L+G+ E+       IR+   +
Sbjct: 4   GYASAFDREGYASLELHPSELLDWLEITCAQDLGSVDAILLGECEERCGYVASIRSRCPE 63

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
             ++ + D  +L++TLD F +G+DDV+ KP+H REI+ARV A  RR+   NN A TG I 
Sbjct: 64  AQIVALEDTANLESTLDLFSAGMDDVLKKPVHVREIIARVGAFRRRITSRNNSAGTGAIE 123

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           VF DGRDP V G+V  LPRRERRILEYL+ N+G+RV KTQIF+A+YG+ ++ V+E VVES
Sbjct: 124 VFFDGRDPVVGGDVMELPRRERRILEYLVKNKGRRVTKTQIFNAVYGVMNDGVDECVVES 183

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218
           HISKLRKKL+ KLG+D ++S R++GY
Sbjct: 184 HISKLRKKLKKKLGYDAIESTRYIGY 209


>gi|82940572|emb|CAJ44296.1| putative transcriptional regulator protein [Rhizobium leguminosarum
           bv. viciae]
          Length = 131

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/124 (79%), Positives = 106/124 (85%)

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           + KP+H REILAR AAI RRLK   N  E G IRVFSDGRDPE+ GEVF LPRRERRILE
Sbjct: 7   MRKPVHPREILARAAAIRRRLKAITNYTEIGGIRVFSDGRDPEINGEVFALPRRERRILE 66

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           YL+ANRG+RV KTQIF+AIYG+FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLGY
Sbjct: 67  YLIANRGRRVTKTQIFNAIYGIFDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLGY 126

Query: 219 SIDW 222
            IDW
Sbjct: 127 CIDW 130


>gi|218516972|ref|ZP_03513812.1| two component transcriptional regulator [Rhizobium etli 8C-3]
          Length = 136

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/125 (71%), Positives = 100/125 (80%), Gaps = 1/125 (0%)

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157
             ++ IH +    R+ +  RRLK   N  + G IRVFSDGRDPE+ GEVF LPRRERRIL
Sbjct: 12  CASRSIHAKSSPGRLRS-RRRLKAIANYTDIGGIRVFSDGRDPEINGEVFALPRRERRIL 70

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           EYL+ANRG+RV KTQIF+AIYG+FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLG
Sbjct: 71  EYLIANRGRRVTKTQIFNAIYGIFDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLG 130

Query: 218 YSIDW 222
           Y IDW
Sbjct: 131 YCIDW 135


>gi|23008628|ref|ZP_00049995.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 203

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 105/174 (60%), Gaps = 9/174 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M+ L+D R  V  GY A F  +G+S  G    EF  WL++++  D+ AI+ FL+G  E+ 
Sbjct: 1   MYFLVDPRDSVNAGYRASFEREGISSFGLLPDEFLNWLRTASSGDLDAIQGFLLGDFEER 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +IR  S+ P+I ++D  SL+ T+   ++GVDDV+ KP+H REILAR  AI+RR+ 
Sbjct: 61  AKCAALIRKQSRAPIIALADLRSLEETVQLLEAGVDDVLPKPVHVREILARSEAIWRRVN 120

Query: 121 ------VSNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                      A+ G    ++V+ DGRDPE+ G   PL RRER ILEYL+  RG
Sbjct: 121 GMVPAPAEAEGADGGADDRLKVYHDGRDPEIDGVPGPLARRERHILEYLVRQRG 174


>gi|229825404|ref|ZP_04451473.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC
           49176]
 gi|229790408|gb|EEP26522.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC
           49176]
          Length = 236

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + IRA  ++  ++ +S    LQ  +D  DSG +D + KP H  E+ ARV ++ RR 
Sbjct: 72  MEVLKNIRAEDNETSVLILSARGGLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRR 131

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V NN   E G + + +  R    +GE   L R+E  ILEYL+ +R   V++ ++ S ++
Sbjct: 132 VVQNNLVLECGELSLDTKARTVTAKGEELSLTRKELAILEYLILHREHPVSQEELISHVW 191

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D +V+   N +  HIS LRKKLR  LG+DP+ ++   GY I
Sbjct: 192 ---DGSVDSFSNSIRVHISALRKKLRTALGYDPITNRVGQGYMI 232


>gi|167579287|ref|ZP_02372161.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 225

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +    + L   +G  ++     E  + +  + R D   ++  L G   K L
Sbjct: 3   LLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKEL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L R+ R    VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR   
Sbjct: 63  -LARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V   +   G +      R+ +  G +  L RRE  ILE LM  +GK V+K ++  ++YGL
Sbjct: 122 VGATQLACGDLVYLFATREFQCGGVLLALRRREHAILETLMLQQGKTVSKARLMDSVYGL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DE    + ++ +I +LRK L   L    + + R LGY
Sbjct: 182 DDEP-SADAIDIYIHRLRKHLSGSLA--QIITLRGLGY 216


>gi|53717679|ref|YP_106665.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|53724235|ref|YP_104202.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|67641558|ref|ZP_00440334.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse
           4]
 gi|76811612|ref|YP_331671.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|121599653|ref|YP_994556.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124386101|ref|YP_001027828.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126440707|ref|YP_001057097.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126450961|ref|YP_001082224.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126451555|ref|YP_001064327.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134281570|ref|ZP_01768278.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167001629|ref|ZP_02267423.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|167717409|ref|ZP_02400645.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167736451|ref|ZP_02409225.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167813526|ref|ZP_02445206.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167822070|ref|ZP_02453541.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167843678|ref|ZP_02469186.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167892152|ref|ZP_02479554.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167900664|ref|ZP_02487869.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167908883|ref|ZP_02495974.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167916922|ref|ZP_02504013.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217423889|ref|ZP_03455389.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|226193228|ref|ZP_03788838.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237814435|ref|YP_002898886.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           MSHR346]
 gi|242315495|ref|ZP_04814511.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254174802|ref|ZP_04881463.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254184105|ref|ZP_04890696.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254186570|ref|ZP_04893087.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254194715|ref|ZP_04901146.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254201274|ref|ZP_04907638.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254206615|ref|ZP_04912966.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254257956|ref|ZP_04949010.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254298627|ref|ZP_04966078.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|254357348|ref|ZP_04973622.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52208093|emb|CAH34023.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52427658|gb|AAU48251.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76581065|gb|ABA50540.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|121228463|gb|ABM50981.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124294121|gb|ABN03390.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126220200|gb|ABN83706.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126225197|gb|ABN88737.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126243831|gb|ABO06924.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134247237|gb|EBA47323.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|147747168|gb|EDK54244.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147752157|gb|EDK59223.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148026412|gb|EDK84497.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157808646|gb|EDO85816.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157934255|gb|EDO89925.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695847|gb|EDP85817.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|169651465|gb|EDS84158.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184214637|gb|EDU11680.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217392952|gb|EEC32974.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|225934828|gb|EEH30805.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237503053|gb|ACQ95371.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           MSHR346]
 gi|238522511|gb|EEP85955.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse
           4]
 gi|242138734|gb|EES25136.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|243062639|gb|EES44825.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254216645|gb|EET06029.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 225

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +    + L   +G  ++     E  + +  + R D   ++  L G   K L
Sbjct: 3   LLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKEL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L R+ R    VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR   
Sbjct: 63  -LARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V   +   G +      R+ +  G    L RRE  ILE LM  +GK V+K ++  ++YGL
Sbjct: 122 VGATQLACGDLVYLFATREFQCGGAPLALRRREHAILETLMLQQGKTVSKARLMDSVYGL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DE    + ++ +I +LRK L   L    + + R LGY
Sbjct: 182 DDEP-SADAIDIYIHRLRKHLSGSLA--QIITLRGLGY 216


>gi|209963556|ref|YP_002296471.1| cell cycle transcriptional regulator (CheY-like receiver domain)
           CtrA, putative [Rhodospirillum centenum SW]
 gi|209957022|gb|ACI97658.1| cell cycle transcriptional regulator (CheY-like receiver domain)
           CtrA, putative [Rhodospirillum centenum SW]
          Length = 256

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 1/142 (0%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           R      +IG+  +  + +T+ +  SG DDV+ KPI+  E  AR+ A+ RR    S++  
Sbjct: 69  RCSGHTIIIGLLGHRCVTSTIAYLRSGADDVLVKPINALEFEARLHAVRRRTHGHSSSEL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + V+ DGRDP V G+   L  RE  I   L  N G+ V+K +I+  +YGL      
Sbjct: 129 RVGRLTVYLDGRDPAVDGQRLRLSHREHAIFSVLALNVGRVVSKEKIYETVYGLTGSDPL 188

Query: 187 ENVVESHISKLRKKLRNKLGFD 208
           + V++ +I KLRKKL    G D
Sbjct: 189 DKVIDVYICKLRKKLAEATGGD 210


>gi|291167113|gb|EFE29159.1| transcriptional regulator FeuP [Filifactor alocis ATCC 35896]
          Length = 225

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R IR   S+  ++ +S    LQ  +D  D+G +D + KP H  E+ ARV ++ RR 
Sbjct: 60  MDVLRSIREEDSETGILILSARGQLQDKIDGLDNGANDYLCKPFHFEELEARVRSLTRRR 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V NN   E G + + +  R    +G VF L R+E  +LEYLM ++ + V + ++   ++
Sbjct: 120 VVQNNLVLECGELALDTKARTVSARGTVFSLTRKEFGLLEYLMLHQDRPVGQEELIEHVW 179

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D +V+   N +  HIS LRKKL+  LG+DP+ ++   GY I
Sbjct: 180 ---DASVDSFSNSIRVHISALRKKLKAVLGYDPIVNRVGQGYII 220


>gi|258654780|ref|YP_003203936.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558005|gb|ACV80947.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 235

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LEL R +R  + VP+I ++    +   L  FD+G DD + KP    E+LARV+A+ RR  
Sbjct: 65  LELARALRGGTDVPVIFVTALDGVDDRLAGFDAGADDYLVKPFAVAELLARVSAVLRRSG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++S    E G + V  D    +  G+   L   ERR+L YL  +RG+ ++KTQI + ++G
Sbjct: 125 RLSAQLIEVGDLIVDDDAGVVQRAGQEIDLTATERRLLLYLARHRGRVLSKTQILTQVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +A + N+VE+ IS LR+KL ++ G   + + R +GY +
Sbjct: 185 Y--DAYDPNLVEAFISGLRRKL-DQHGPRLIHTVRGVGYRL 222


>gi|83955132|ref|ZP_00963788.1| two-component transcriptional regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83840461|gb|EAP79634.1| two-component transcriptional regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 232

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 4/174 (2%)

Query: 51  AFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
           A LIG+ +   E  R +R    V P+I + D+ + + T D  + G DDV+  PI   E+L
Sbjct: 49  AVLIGECDDTREYIRAMRTAGCVNPVIVLKDFRNAKDTSDLLNLGADDVIVSPIRGAEVL 108

Query: 110 ARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +R  +I RR    ++     G +  + DGRDP V G    L +RE  + ++L  N  K +
Sbjct: 109 SRTNSIIRRHYGHASESVIVGELTAYFDGRDPIVSGSRIKLSKREYSVFQHLALNSNKVI 168

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
           +K  I+ AIYG   +   + V++ +I KLRKKL   +K G+  +++    GY +
Sbjct: 169 SKDAIYDAIYGSSIDQPFDKVIDVYICKLRKKLASASKSGWQYIETVHGRGYKL 222


>gi|167761405|ref|ZP_02433532.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704]
 gi|167661071|gb|EDS05201.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704]
          Length = 225

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 8/167 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G KVL+  R+    ++  ++ +S    LQ  +D  D G +D + KP H  E+ ARV ++ 
Sbjct: 59  GMKVLQKIRM--EDTETNILILSARGQLQDKIDGLDGGANDYLCKPFHFEELEARVRSLT 116

Query: 117 RRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR  V NN   E G I + +  R    +G    L R+E  +LEYLM ++ + V++ ++  
Sbjct: 117 RRCVVQNNLVLECGEISLDTKARTALARGIELSLTRKELGLLEYLMLHQERPVSQEELIQ 176

Query: 176 AIYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   D +V+   N +  HIS LRKKLR  LG+DP+ ++   GY I
Sbjct: 177 HVW---DGSVDSFSNSIRVHISALRKKLRAALGYDPITNRIGQGYLI 220


>gi|83944168|ref|ZP_00956624.1| two-component transcriptional regulator [Sulfitobacter sp. EE-36]
 gi|83845035|gb|EAP82916.1| two-component transcriptional regulator [Sulfitobacter sp. EE-36]
          Length = 234

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 4/174 (2%)

Query: 51  AFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
           A LIG+ +   E  R +R    V P+I + D+ + + T D  + G DDV+  PI   E+L
Sbjct: 51  AVLIGECDDTREYIRAMRTAGCVNPVIVLKDFRNAKDTSDLLNLGADDVIVSPIRGAEVL 110

Query: 110 ARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +R  +I RR    ++     G +  + DGRDP V G    L +RE  + ++L  N  K +
Sbjct: 111 SRTNSIIRRHYGHASESVIVGELTAYFDGRDPIVSGSRIKLSKREYSVFQHLALNSNKVI 170

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
           +K  I+ AIYG   +   + V++ +I KLRKKL   +K G+  +++    GY +
Sbjct: 171 SKDAIYDAIYGSSIDQPFDKVIDVYICKLRKKLASASKSGWQYIETVHGRGYKL 224


>gi|167834881|ref|ZP_02461764.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 225

 Score = 88.2 bits (217), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +    I L   +G  ++     E  + +  + R D   ++  L G   K L
Sbjct: 3   LLLVEDNAELAHWIIDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKEL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L R+ R    VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR   
Sbjct: 63  -LARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V   +   G +      R+ +  G    L RRE  ILE LM  +GK V+K ++  ++YGL
Sbjct: 122 VGVTQLACGDLVYLFATREFQCGGVPLALRRREHAILETLMLQQGKTVSKARLMDSVYGL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DE    + ++ +I +LRK L   L    + + R LGY
Sbjct: 182 DDEP-SADAIDIYIHRLRKHLSGSLA--QIITLRGLGY 216


>gi|83026425|gb|ABB96249.1| cell cycle transcriptional regulator [Azospirillum brasilense]
          Length = 264

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 3/206 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           VL++   L+ D      G   +  +  +    EE L+     D    +A ++G  +    
Sbjct: 4   VLVEPNPLIADALGRQLGMGKIRYDRQDWAGLEELLRDQG-ADGLGYDAIVLGSVDDPAR 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
               +RAH     ++ + D   + TT++   +G DDV+ KP+   E+ AR+    RR + 
Sbjct: 63  CVAALRAHQVGAAILCLLDRRCVATTVELLHAGADDVLVKPVVSAEVRARIEVARRRSRG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +N    G + VF DGRDPEV GE   L +RE  IL  L A+  + V+K  I+  +YGL
Sbjct: 123 LLSNAVRVGQLTVFLDGRDPEVAGERLRLSQREHAILGVLAAHHRRVVSKEHIYDEVYGL 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG 206
                 + V++ +I KLRKK+    G
Sbjct: 183 SGADPLDKVIDVYICKLRKKIAEATG 208


>gi|126732451|ref|ZP_01748250.1| two-component system regulatory protein [Sagittula stellata E-37]
 gi|126707090|gb|EBA06157.1| two-component system regulatory protein [Sagittula stellata E-37]
          Length = 233

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE---AFLIGKGE 58
            +L++D A V D  +A FG  G +++  NS+E  + L + A +D   I        G G 
Sbjct: 13  LLLVEDTADVADAIVASFGHRGDAVDHVNSVE--DALGALAVQDYDVIILDIGLPDGLGT 70

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +L   R     +  P++ ++   +++  +   D G DD + KP   RE+ ARV A+ RR
Sbjct: 71  DILSSLR--SRGTPTPVMMLTARSNIEDRVAALDKGADDYLIKPFDLRELHARVRAMLRR 128

Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             V  +   E G I     G   EV+G    L RRE  +LE L+ANR + V K ++   +
Sbjct: 129 QDVDRSGVIEFGDITFDPAGLTVEVKGRPVALVRREFNVLEILLANRERVVPKDKLLERM 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y   DE V  N VE ++ +LRKKL N      + + R LGY +
Sbjct: 189 YAFNDEDVSPNAVELYVGRLRKKLCNSQ--ITIKTLRGLGYQL 229


>gi|288962696|ref|YP_003452990.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914962|dbj|BAI76446.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 274

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 2/159 (1%)

Query: 50  EAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
           +A +IG          ++RA +    +I + +     TT     +G DDV+ KPI   EI
Sbjct: 50  DAIIIGDVGDTEACVAMLRARNVTAAIICLIERRCANTTAGILRAGADDVLVKPIVSTEI 109

Query: 109 LARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            AR+ AI RR   +++N    G + VF DGRDPEV GE   L +RE  IL  L  N  + 
Sbjct: 110 RARLEAIRRRSYGLTSNAVTVGRLTVFLDGRDPEVDGERLRLSQREHAILSVLALNHRRV 169

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           V+K  I+  +YGL      + V++ +I KLRKK+    G
Sbjct: 170 VSKEHIYEEVYGLSGSDPLDKVIDVYICKLRKKIDTATG 208


>gi|167568211|ref|ZP_02361085.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 225

 Score = 85.9 bits (211), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +    + L   +G  ++     E  + +  + R D   ++  L G   K L
Sbjct: 3   LLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKEL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L R+ R    VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR   
Sbjct: 63  -LARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V   +   G +      R+ +  G    L RRE  ILE LM  +GK V+K ++  ++YGL
Sbjct: 122 VGATQLACGDLVYLFATREFQCSGVPLVLRRREHAILETLMLQQGKTVSKARLMDSVYGL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DE    + ++ +I +LRK L        + + R LGY
Sbjct: 182 DDEP-SADAIDIYIHRLRKHLSGSAA--QIITLRGLGY 216


>gi|83719158|ref|YP_440599.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|167617392|ref|ZP_02386023.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|83652983|gb|ABC37046.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 225

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +    + L   +G  ++     E  + +  + R D   ++  L G   K L
Sbjct: 3   LLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKEL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L R+ R    VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR   
Sbjct: 63  -LARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V   +   G +      R+ +       L RRE  ILE LM  +GK V+K ++  ++YGL
Sbjct: 122 VGATQLACGDLVYLFATREFQCGSVPLALRRREHAILETLMLQQGKTVSKARLMDSVYGL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DE    + ++ +I +LRK L   L    + + R LGY
Sbjct: 182 DDEP-SADAIDIYIHRLRKHLSGSLA--QIITLRGLGY 216


>gi|118591736|ref|ZP_01549132.1| two-component system, regulatory protein [Stappia aggregata IAM
           12614]
 gi|118435729|gb|EAV42374.1| two-component system, regulatory protein [Stappia aggregata IAM
           12614]
          Length = 212

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 12/210 (5%)

Query: 19  FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQ-VPLI 76
            G  GV+ +   +LE      +  R DV  ++  L  G G    EL + IRA  +  P++
Sbjct: 9   LGRSGVACDLAKTLEEARACVTVQRYDVIVLDINLPDGLGT---ELLKEIRARGERTPVL 65

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRV 133
            ++   S+   +   +SG DD + KP  HRE+ AR+ A+YRR +   ++AE    G +  
Sbjct: 66  MLTAEFSVDDRVSSLNSGADDYLVKPFDHRELEARIRALYRREQ--GDKAEELTLGSLTF 123

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
            +  R     G    L RRE  +LE L+ NRGK V+K ++F  ++   D  V  N +E +
Sbjct: 124 NASARVVRQDGSPITLTRREFSLLEILVRNRGKTVSKERLFEGVFSFQDTDVSMNALELY 183

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +++LRKKL    G   ++++R LGY ++ +
Sbjct: 184 VARLRKKLSG--GSVRIETQRGLGYKLEVD 211


>gi|317125788|ref|YP_004099900.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589876|gb|ADU49173.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 226

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 14/216 (6%)

Query: 8   RALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           RAL + GY A    DG  +LE F   E E +       D+  ++  L G     +E+ R+
Sbjct: 18  RALGEAGYAADVAHDGPAALEAF---EVETY-------DLVVLDLMLPGIAGGGMEVCRV 67

Query: 67  IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +R HS  VP++ ++   SL+  ++  D+G DD + KP H  E+LARV A+ RR   ++  
Sbjct: 68  MRRHSSDVPILMLTALDSLRRKVEGLDAGADDYLVKPFHLSELLARVRALMRRAPRADAP 127

Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E   + +    R     G   PL  +E  +LEYLM N G  V+ +Q+    +    + 
Sbjct: 128 VLEAAGVLLDPATRTAHRAGRSIPLTAKEYAVLEYLMRNAGHVVSSSQLIDHAWDTNYQG 187

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V  NVV+++I  LR KL      + ++++R  GY I
Sbjct: 188 V-SNVVQTYIRYLRVKLAEPGLPEVIETRRGYGYLI 222


>gi|260430186|ref|ZP_05784161.1| DNA-binding response regulator [Citreicella sp. SE45]
 gi|260419109|gb|EEX12364.1| DNA-binding response regulator [Citreicella sp. SE45]
          Length = 217

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LI+D A+V D  +   G D   +    + LE E  L+     D+  ++  L   G+  
Sbjct: 3   ILLIEDDAIVGDALVKSLGRDRADVVWSRDGLEAEAMLRGGG-FDLVVLDLGL--PGQDG 59

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R +R    V P++ ++    ++  +   D G DD + KP    E+LAR  A+ RR 
Sbjct: 60  LTLLRGLRGRGDVTPVLVLTARDGVEDRIRGLDHGADDYLLKPFDTGELLARCRALLRRA 119

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +R E G + V        + G V  LP++E R+L YL   RG+ V K Q+   +Y
Sbjct: 120 QGRGEDRIELGQLTVDLQAHTVTLAGRVLTLPQKEFRLLVYLAERRGRVVPKPQLEQMLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +DE  E N VE ++S LR+    K+G   + + R +GY I
Sbjct: 180 G-WDEGAESNTVEVYVSALRR----KIGAASIRTLRGVGYMI 216


>gi|312962580|ref|ZP_07777070.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6]
 gi|311283160|gb|EFQ61751.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6]
          Length = 225

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  +E   + E   +       D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLFTRLTDSGHVVEAVANAEEALYQTGQFNHDLAIIDLGLPGMGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R  ++  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTQAKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARMNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  E   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLDEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLEGPSGFKPIDTVRGLGY 218


>gi|317500294|ref|ZP_07958520.1| transcriptional regulatory protein CutR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898302|gb|EFV20347.1| transcriptional regulatory protein CutR [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 224

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 6/134 (4%)

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEV 146
           +D  D+G +D + KP H  E+ AR+ ++  R    N+   T G +   +  R   V GE 
Sbjct: 88  VDGLDAGANDYLAKPFHLEELAARIRSLTLRQFTQNDVVLTCGDVSFDTKSRKAIVGGEP 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNK 204
            PL R+E  ILEYLM NRG+ +++ +    ++   D +V+   N +  HIS LRKKLR  
Sbjct: 148 LPLTRKETGILEYLMVNRGRPISQEEFIEHVW---DNSVDNFSNSIRVHISALRKKLRTS 204

Query: 205 LGFDPVDSKRFLGY 218
           LG+DP+ ++   GY
Sbjct: 205 LGYDPIRNRIGEGY 218


>gi|331086930|ref|ZP_08336007.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410096|gb|EGG89531.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 226

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 92/162 (56%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL + +R ++ +  ++ +S    +   ++  D+G +D + KP H +E+ AR+ ++ RR 
Sbjct: 60  MELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V N+   + G I+  +  R+   + E  PL R+E  ILEYL+ N G+ V++ ++   ++
Sbjct: 120 FVQNDICLKCGEIKFDTIKREAYAKEEAVPLTRKENGILEYLLINIGRPVSQEELIEHVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               ++     +  H+S LRKKL+ KLG+DP+ +K   GY I
Sbjct: 180 DATADSFS-GAIRVHMSSLRKKLKAKLGYDPIQNKVGEGYKI 220


>gi|332140773|ref|YP_004426511.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550795|gb|AEA97513.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 224

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           +A    P++ ++     Q  ++  D+G DD + KP H+ E+LAR  A+ RR    +N   
Sbjct: 68  QADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRASGQANPTI 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + GPI + +   +  + G+   L   E +++EYLM N  K ++KT++   IY   D  ++
Sbjct: 128 QFGPISLDTVSEELSINGKALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYDQ-DFDLD 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            NV+E  + +LRKKL       P+++ R  GY I+ N
Sbjct: 187 SNVIEVFVGRLRKKLDPAGDLKPIETLRGRGYRINRN 223


>gi|169824288|ref|YP_001691899.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|167831093|dbj|BAG08009.1| two-component response regulator [Finegoldia magna ATCC 29328]
          Length = 238

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 8/222 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGK-GE 58
           M   ++D   +++  I    ++G    GF    EF+  L SS+  D+  ++  L GK G 
Sbjct: 17  MICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSI-DLIILDIMLPGKSGL 75

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++L+  R       +P++ ++   +    +   DSG DD + KP    E+LARV A+ RR
Sbjct: 76  EILKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRR 135

Query: 119 LKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +S  +++     I +  D R   V GE   L  +E  +L YL++N GK + +  I + 
Sbjct: 136 SSLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTK 195

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I+G FD   E   V+ HI+ LR+KL+N      + + R LGY
Sbjct: 196 IWG-FDFEGESRTVDVHIATLRQKLKN--ASSIIKTIRNLGY 234


>gi|238924384|ref|YP_002937900.1| response regulator [Eubacterium rectale ATCC 33656]
 gi|238876059|gb|ACR75766.1| response regulator [Eubacterium rectale ATCC 33656]
          Length = 257

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 93/162 (57%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL + +R ++ +  ++ +S    +   ++  D+G +D + KP H +E+ AR+ ++ RR 
Sbjct: 91  MELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 150

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V N+   + G I+  +  R+   +GE  PL R+E  ILEYL+ N G+ V++ ++   ++
Sbjct: 151 FVQNDICLKCGEIKFDTIKREAYAKGEPVPLTRKENGILEYLLINIGRPVSQEELIEHVW 210

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               ++     +  H+S LRKKL+ +LG+DP+ +K   GY I
Sbjct: 211 DATADSF-SGAIRVHMSSLRKKLKAELGYDPILNKVGEGYKI 251


>gi|302380543|ref|ZP_07269008.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233958|ref|ZP_07320607.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302311486|gb|EFK93502.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302494883|gb|EFL54640.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 222

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 8/222 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGK-GE 58
           M   ++D   +++  I    ++G    GF    EF+  L SS+  D+  ++  L GK G 
Sbjct: 1   MICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSI-DLIILDIMLPGKSGL 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++L+  R       +P++ ++   +    +   DSG DD + KP    E+LARV A+ RR
Sbjct: 60  EILKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRR 119

Query: 119 LKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +S  +++     I +  D R   V GE   L  +E  +L YL++N GK + +  I + 
Sbjct: 120 SSLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I+G FD   E   V+ HI+ LR+KL+N      + + R LGY
Sbjct: 180 IWG-FDFEGESRTVDVHIATLRQKLKNASSI--IKTIRNLGY 218


>gi|332993804|gb|AEF03859.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas sp. SN2]
          Length = 224

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ ++     Q  ++  D+G DD + KP H+ E+LARV A+ RR    +N   + GP
Sbjct: 72  RCPVLILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARVKALIRRASGQANPVIQFGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I + +   +  V      L   E +++EYLM N  K V+KT++   IY   D  ++ NV+
Sbjct: 132 ISLDTVAEEITVNDAPLELTAYEYKVMEYLMLNPQKVVSKTELTEHIYDQ-DFDLDSNVI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           E  + +LRKKL  +  F P+++ R  GY I+ N
Sbjct: 191 EVFVGRLRKKLDPENSFKPIETLRGRGYRINRN 223


>gi|13474722|ref|NP_106291.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14025477|dbj|BAB52077.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 224

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 2/163 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  +PR+   H  VP+I ++    L   +   D+G DD + KP    E++AR+ A++
Sbjct: 57  GDGLSLIPRLRALHLDVPVIALTAMSGLDDRVAGLDAGADDYMVKPFATVELVARLHALH 116

Query: 117 RRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   S  N+   G +      R+  ++ +   LPRRER +LE L+   G+ + ++ +  
Sbjct: 117 RRSFTSRANQTMVGRLTYDFRHREALIEDQALDLPRRERLVLETLIRRPGRTIMRSALEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           A+Y L DE +  N +++HIS+LR+KL +      + + R LGY
Sbjct: 177 AVYALDDE-IGSNALDAHISRLRRKLDDVAAGIEIRAIRNLGY 218


>gi|8885859|gb|AAF80268.1|AF155506_2 ArmR [Pseudomonas sp. JR1]
          Length = 227

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 117/224 (52%), Gaps = 12/224 (5%)

Query: 1   MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M VL+ +D  L+  G +A     G+++E   +      +   A  DV  ++  L    E 
Sbjct: 1   MHVLVCEDDELIASGIVAGLTAQGLTVEHVATASSARAMLKVAEFDVMVLDLGL--PDED 58

Query: 60  VLELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            L+L + +R HS  ++P++ ++   S+   +D   +G DD + KP   RE+ AR+  + R
Sbjct: 59  GLKLLQQLR-HSGLEIPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLR 117

Query: 118 RLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R+   S N  E G +      R+  + G+   L RRE+ +L+ L+ NRG+ ++  Q+  +
Sbjct: 118 RVAGRSVNLIEHGRLTYDPSSRETMLGGQPVDLSRREQSLLQALLHNRGRVLSTEQLKDS 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG F++ +E N +  HI  LR+KL N +    V++ R LGY +
Sbjct: 178 VYG-FNDELESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216


>gi|209517913|ref|ZP_03266746.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501629|gb|EEA01652.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 231

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +    + L   +  +++   + E  E L      D   ++  L G G K +
Sbjct: 3   LLLVEDDADLARWVMNLMQVEQFAIDWAQNGECAEALLGQQCYDAVLLDMRLPGIGGKEV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R+ R    VP++ ++   S    +  F +G DD V KP   RE++AR+ A+ RR   
Sbjct: 63  -LARLRRKRDNVPVLMLTANGSTDDKVACFSAGADDYVVKPFDARELVARIKALIRRQAA 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     E G +R   D R+  +Q E  PL RRE  ILE L+  +GK V+K  +   I+ 
Sbjct: 122 GDRGQSTECGNLRYLFDSREFVLQDERLPLRRREHAILEALILKQGKTVSKATLMDKIFT 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L DE    + ++ +I +LRK L        + + R LGY
Sbjct: 182 L-DEEPSADAIDIYIHRLRKHLAASTA--KIMTLRGLGY 217


>gi|297588265|ref|ZP_06946908.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573638|gb|EFH92359.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 222

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 110/222 (49%), Gaps = 8/222 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGK-GE 58
           M   ++D   +++  I    ++G    GF    EF+  L SS+  D+  ++  L GK G 
Sbjct: 1   MICCVEDDKSIRELIIYALNNEGYEAMGFGDYNEFKSTLYSSSI-DLIILDIMLPGKSGL 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +L+  R       +P++ ++   +    +   DSG DD + KP    E+LARV A+ RR
Sbjct: 60  DILKEIRNNEKTKSIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRR 119

Query: 119 LKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +S  +++     I +  D R   V GE   L  +E  +L YL++N GK + +  I + 
Sbjct: 120 SSLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I+G FD   E   V+ HI+ LR+KL+N      + + R LGY
Sbjct: 180 IWG-FDFEGESRTVDVHIATLRQKLKNASSI--IKTIRNLGY 218


>gi|187918765|ref|YP_001887796.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717203|gb|ACD18426.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 232

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 3/141 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R    VP++ ++   S    +  F +G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  LARLRRKRDNVPVLMLTANGSTDDKVACFSAGADDYVVKPFDARELVARIKALIRRQAAG 122

Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     E G +R   D R+  +Q E  PL RRE  ILE LM  +GK V+K+ +   ++ L
Sbjct: 123 DKGQSIECGDLRYLFDSREFMLQSEPLPLRRREHAILETLMLKQGKTVSKSTLMDKVFTL 182

Query: 181 FDEAVEENVVESHISKLRKKL 201
            DE    + ++ +I +LRK L
Sbjct: 183 DDEP-SADAIDIYIHRLRKHL 202


>gi|120598744|ref|YP_963318.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146293179|ref|YP_001183603.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120558837|gb|ABM24764.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145564869|gb|ABP75804.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319426309|gb|ADV54383.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 219

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 14/223 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58
            +L++D  L+  G        G+ ++  NS  +++ LQ    E  SAI   L    G G+
Sbjct: 3   IMLVEDNELLAQGICLSLAKLGMQVDHLNS--YQQALQGVKNETFSAIVLDLGLPDGNGK 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +L+  R  +    +P I ++   +  T L+  D G DD + KP   RE+ AR+ AI RR
Sbjct: 61  DLLKAWR--QQGISIPTIVLTANTNFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRR 118

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + +N    G + +  + RD   + +   L RRE ++L  L  + G+ + + Q+    
Sbjct: 119 QYGLDHNSLIVGALCIDLNTRDVTFREQNIQLSRREFQLLLELAQSAGRVLTRGQLEQLT 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG +DE V  N +E HI  LRKKL N+L    + + R +GY++
Sbjct: 179 YG-WDE-VGSNSIEVHIHHLRKKLANEL----IKTVRGIGYTL 215


>gi|330962432|gb|EGH62692.1| DNA-binding response regulator [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 227

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61
           +L++D  L+ +G IA  G  G ++E   +    E +  +AR +V  ++  L  K G  +L
Sbjct: 4   LLVEDDKLIAEGVIAGLGAQGFNVEHVINAAGAEAMLLAARFEVMILDLGLPDKDGLTLL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L R    H  +P++ ++   S+   +    +G DD + KP   RE+ AR+  ++RR L 
Sbjct: 64  RLLRERSFH--LPVLILTARDSIADRVAGLQAGGDDYLLKPFDLRELAARLHTLHRRFLG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S N  + G + +    R+  + GE   L RRE+ +L+ L+ ++G+ V+  Q+  A+YG 
Sbjct: 122 RSTNLIQHGSLGIDPTTRETFLAGEPIDLSRREQSLLKALLDSKGRIVSADQLKDAVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D+ VE N +  HI  LR+KL N +    V + R LGY I
Sbjct: 182 ADD-VESNALNVHIHNLRRKLGNNI----VHTVRGLGYRI 216


>gi|221134973|ref|ZP_03561276.1| response regulator in two-component regulatory system with PhoQ
           [Glaciecola sp. HTCC2999]
          Length = 224

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP HH+E+LARV A+ RR    +++    GPI++    +  ++  +   L
Sbjct: 91  LDAGADDYLTKPFHHQELLARVNALIRRSSGHASSELTCGPIQLHLTQQKVKIDDQELEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
              E ++LEYLM NR K ++KT++   IY   D  ++ NV+E  + +LRKK+       P
Sbjct: 151 TAYEYKVLEYLMLNRDKVISKTELTEHIYDQ-DFDLDSNVIEVFVGRLRKKIDPTNTLKP 209

Query: 210 VDSKRFLGYSI 220
           +++ R  GY +
Sbjct: 210 IETLRGRGYRL 220


>gi|146280784|ref|YP_001170937.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501]
 gi|145568989|gb|ABP78095.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501]
 gi|327479051|gb|AEA82361.1| two-component response regulator PhoP [Pseudomonas stutzeri DSM
           4166]
          Length = 225

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++       G+ G  ++   + E   +       D++ I+  L   G   L+
Sbjct: 4   LVVEDEALLRHHLQTRLGESGHIVDAVPNAEEALYQTHEFNHDLAVIDLGL--PGISGLD 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R +R+  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR   
Sbjct: 62  LIRQLRSRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    E GP+ +  + +     GE   L   E RILEYLM ++ + VAK ++   +Y  
Sbjct: 122 FTQATIEAGPLLLDLNRKQATANGEPLALTAYEYRILEYLMRHQQQVVAKERLMEQLYS- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DE  + NV+E  + +LR+KL  +    P+++ R LGY
Sbjct: 181 GDEERDPNVIEVLVGRLRRKLEAQCAMKPIETVRGLGY 218


>gi|288818807|ref|YP_003433155.1| two component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|288788207|dbj|BAI69954.1| two component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|308752393|gb|ADO45876.1| two component transcriptional regulator, winged helix family
           [Hydrogenobacter thermophilus TK-6]
          Length = 218

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 7/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE+VL+  R   +  + P++ ++    L   +D F  G DD + KP H  E+LARV AI 
Sbjct: 59  GEEVLKSLR--ESGVKTPVLTLTVVSDLFKKVDLFALGADDYLTKPFHLEELLARVRAII 116

Query: 117 RRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   S +   E G +R+  + +   V G+  PL   E  +LEYL  NRG+ V++ +I  
Sbjct: 117 RRSSGSTSDIMELGEVRIEMNKKRVLVNGQEVPLTATEYTVLEYLCLNRGRYVSREEIIE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  E  E N VE  IS++RKKL  K   D + S R  GY +
Sbjct: 177 RCLSYRYEP-ESNTVEVFISRIRKKLGIK---DFIKSSRGFGYRV 217


>gi|319785548|ref|YP_004145024.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171436|gb|ADV14974.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 224

 Score = 81.6 bits (200), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 87/163 (53%), Gaps = 2/163 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  +PR+   H  VP+I ++    L   +   D+G DD + KP    E++AR+ A++
Sbjct: 57  GDGLSLIPRLRALHLDVPVIALTALSGLDDRVAGLDAGADDYMVKPFATVELVARLNALH 116

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR      N+   G +      R+  V+ +   LPRRER +LE L+   G+ + +  +  
Sbjct: 117 RRSFTTRANQVMVGRLTYDFRHREALVEDQALELPRRERLVLETLIRRPGRTIMRGALEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           A+Y L DE +  N +++HIS+LR+KL +      + + R LGY
Sbjct: 177 AVYALDDE-IGSNALDAHISRLRRKLDDVAAGIEIRAIRNLGY 218


>gi|170722714|ref|YP_001750402.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760717|gb|ACA74033.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 227

 Score = 81.6 bits (200), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  L+  G  A     G++++   +      +  +A+ DV  ++  L    E  L
Sbjct: 3   VLLCEDDDLIASGICAGLTAQGLTVDRVANAGAARAMLQAAQFDVMILDLGL--PDEDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R     +P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR+ 
Sbjct: 61  KLLRRLRQQGIDLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  E GP+R      +  + G+   L RRE+ +L+ L+ N G+ ++  Q+   +YG
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE VE N +  HI  LR+KL N +    V++ R LGY +
Sbjct: 181 FSDE-VESNALNVHIHHLRRKLGNSI----VETVRGLGYRL 216


>gi|163815763|ref|ZP_02207134.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759]
 gi|158448904|gb|EDP25899.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759]
          Length = 239

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 6/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + + + +  +I +S    +   ++  D+G +D + KP H +E+ AR+ ++ RR  V 
Sbjct: 76  LKELRQQNEETKVIILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFVQ 135

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   E+G I+  +  R+   +GE  PL R+E  ILEYL+ N G+ V++ ++   ++   
Sbjct: 136 KDVCLESGGIKFDTIKREAYAKGEKVPLTRKENGILEYLLLNLGRPVSQEELMEHVW--- 192

Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D +V+     +  H+S LR+KL+  LG+DP+ +K   GY I
Sbjct: 193 DASVDSFSGAIRVHMSSLRRKLKAVLGYDPILNKVGEGYKI 233


>gi|256545445|ref|ZP_05472807.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170]
 gi|256398841|gb|EEU12456.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170]
          Length = 224

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 87/150 (58%), Gaps = 6/150 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GP 130
           +  ++ +S    +Q  ++  D+G +D + KP H  E+ ARV ++ RR  + NN   +   
Sbjct: 72  ETKVLILSARSQIQDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNFIQNNTELSFDK 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--EN 188
           I+  S  R   ++ +   L R+E  ILEYL+ N+G+ V++ ++   ++   D +V+   N
Sbjct: 132 IKFDSKNRTIFIEDKELKLTRKESGILEYLLLNQGRPVSQEELIDHVW---DSSVDLLSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +  HIS LRKKL+ +LG+DP++++  +GY
Sbjct: 189 SIRVHISALRKKLKQELGYDPIENRIGIGY 218


>gi|104780534|ref|YP_607032.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila
           L48]
 gi|95109521|emb|CAK14222.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila
           L48]
          Length = 225

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++   + E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLFTRLGEGGHVVQAVANAEEALYQAEQYNHDLAVIDLGL--PGMSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R+  Q  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRSLGQTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +      L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDDAPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY
Sbjct: 181 -DDEERDPNVIEVLVGRLRRKLEGDNGFKPIDTVRGLGY 218


>gi|295107699|emb|CBL05242.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 230

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 6/134 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G +D + KP H  E+ AR+ ++  RR    N     G +   +  R   V GE   L
Sbjct: 97  LDAGANDYLTKPFHLDELAARIRSLTLRRFAQDNIVLTCGKLSFDTKARIASVGGEALSL 156

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGF 207
            R+E  ILEYLM N+G+ V++ ++   ++   D +V    N    HIS LRKKLR+ LG+
Sbjct: 157 TRKETGILEYLMLNQGRPVSQEELIEHVW---DSSVNSFSNATRVHISSLRKKLRSALGY 213

Query: 208 DPVDSKRFLGYSID 221
           DP+ ++   GY ++
Sbjct: 214 DPIRNRIGEGYVME 227


>gi|257790535|ref|YP_003181141.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474432|gb|ACV54752.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 224

 Score = 81.3 bits (199), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 6/134 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G +D + KP H  E+ AR+ ++  RR    N     G +   +  R   V GE   L
Sbjct: 91  LDAGANDYLTKPFHLDELAARIRSLTLRRFAQDNIVLTCGKLSFDTKARIASVGGEALSL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGF 207
            R+E  ILEYLM N+G+ V++ ++   ++   D +V    N    HIS LRKKLR+ LG+
Sbjct: 151 TRKETGILEYLMLNQGRPVSQEELIEHVW---DSSVNSFSNATRVHISSLRKKLRSALGY 207

Query: 208 DPVDSKRFLGYSID 221
           DP+ ++   GY ++
Sbjct: 208 DPIRNRIGEGYVME 221


>gi|126174120|ref|YP_001050269.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|217973566|ref|YP_002358317.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304411340|ref|ZP_07392954.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307305338|ref|ZP_07585086.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125997325|gb|ABN61400.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|217498701|gb|ACK46894.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304350195|gb|EFM14599.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911641|gb|EFN42066.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
          Length = 219

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 14/223 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58
            +L++D  L+  G        G+ ++  NS  +++ LQ    E  SAI   L    G G+
Sbjct: 3   IMLVEDNELLAQGICLSLAKLGMQVDHLNS--YQQALQGVKNESFSAIVLDLGLPDGNGK 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++L+  R  +    +P I ++      T L+  D G DD + KP   RE+ AR+ AI RR
Sbjct: 61  ELLKAWR--QQGVSIPTIVLTANTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRR 118

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + +N    G + +  + R+   + +   L RRE ++L  L  + G+ + ++Q+    
Sbjct: 119 QYGLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLELAQSAGRVLTRSQLEQLT 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG +DE V  N +E HI  LRKKL N+L    + + R +GY++
Sbjct: 179 YG-WDE-VGSNSIEVHIHHLRKKLANEL----IKTVRGIGYTL 215


>gi|16264624|ref|NP_437416.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|307303521|ref|ZP_07583275.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307318628|ref|ZP_07598061.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15140762|emb|CAC49276.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|306895655|gb|EFN26408.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306902912|gb|EFN33504.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 223

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D   + +       D G  L+G ++L   E   ++   D+  ++  L  G G ++
Sbjct: 3   LLLVEDSPRLTELINETMHDAGWRLDGVSTLRDAEAAIAAREHDLVLLDLGLPDGDGLQL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R  R H  +P++ I+   S+   +   D+G DD + KP HHRE+L+R  A+ RR  
Sbjct: 63  LQWIR--REHVGLPVLIITARGSVDERIAGLDAGADDYLVKPFHHRELLSRCRAMLRR-- 118

Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N  A     E G +R      +   +G V PLP RER ++E L+   G+ V K ++ +
Sbjct: 119 --NPNAIQPVLEAGALRYDPATAELTCEGAVLPLPPRERSLIEILLREVGRVVPKRRLET 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           A+   + + +  N +E  +S++RK+L++      +++ R +GY
Sbjct: 177 ALSE-YGQELSSNALELAVSRVRKRLQSVETGVQIETVRGIGY 218


>gi|239993470|ref|ZP_04713994.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii ATCC 27126]
          Length = 224

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           +A    P++ ++     Q  ++  D+G DD + KP H+ E+LAR  A+ RR    +N   
Sbjct: 68  QADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRASGQANPTI 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + GPI + +   +  + G+   L   E +++EYLM N  K ++KT++   IY   D  ++
Sbjct: 128 QFGPISLDTVSEELSLNGQALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYDQ-DFDLD 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            NV+E  + +LRKKL       P+++ R  GY I+
Sbjct: 187 SNVIEVFVGRLRKKLDPTGELKPIETLRGRGYRIN 221


>gi|117920330|ref|YP_869522.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117612662|gb|ABK48116.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 219

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 109/224 (48%), Gaps = 16/224 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58
            +L++D  L+  G        G+ ++  +S  +++ L     E  SAI   L    G G+
Sbjct: 3   IMLVEDNELLAQGICLSLAKMGMQVDHLSS--YQQALVGIKNETFSAIVLDLGLPDGNGK 60

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              EL +  RA    +P I ++      T L+  D G DD + KP   RE+ AR+ AI R
Sbjct: 61  ---ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVR 117

Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   + NN    G + +  + R+   + +  PL RRE ++L  L  + G+ + + Q+   
Sbjct: 118 RQYGLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLELAQSAGRVLTRNQLEQL 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            YG +DE V  N +E HI  LRKKL N    D + + R +GY++
Sbjct: 178 TYG-WDE-VGSNSIEVHIHHLRKKLAN----DLIKTVRGIGYTL 215


>gi|167034787|ref|YP_001670018.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861275|gb|ABY99682.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 227

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  L+  G  A     G++++   +      +  +A+ DV  ++  L    E  L
Sbjct: 3   VLLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGL--PDEDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   + +P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR+ 
Sbjct: 61  KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  E GP+R      +  + G+   L RRE+ +L+ L+ N G+ ++  Q+   +YG
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE VE N +  HI  LR+KL N +    V++ R LGY +
Sbjct: 181 FSDE-VESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216


>gi|330808420|ref|YP_004352882.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376528|gb|AEA67878.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 226

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 114/223 (51%), Gaps = 10/223 (4%)

Query: 1   MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M VL+ +D  L+  G +A     G+++E   +      +   A  DV  ++  L    E 
Sbjct: 1   MRVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMVGVAEFDVMVLDLGL--PDED 58

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L+L R +R    + P++ ++   S+   +D   +G DD + KP   RE+ AR+  + RR
Sbjct: 59  GLKLLRQLRQQGLETPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRR 118

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   S N  E G +      R+  + G+   L RRE+ +L+ L+ +RG+ ++  Q+  ++
Sbjct: 119 VAGRSVNLIEHGRLTYDPSSRETTLDGQPVDLSRREQSLLQALLHSRGRVLSTEQLKDSV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG F++ +E N +  HI  LR+KL N +    V++ R LGY +
Sbjct: 179 YG-FNDELESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216


>gi|256374991|ref|YP_003098651.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255919294|gb|ACU34805.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 228

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 105/213 (49%), Gaps = 16/213 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRII 67
           AL + GY      DG  LEG    E   +     R D+  ++  L G+ G  +LE   +I
Sbjct: 26  ALREQGYQVRVRPDGRDLEG----ELTRF-----RPDLVVLDVMLPGRDGFALLE---VI 73

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S   ++ ++    +Q  L   D G DD V KP    E++ARV+A+ RRL  + +  +
Sbjct: 74  RRGSGAGVVMLTARDGVQDRLRGLDRGADDYVTKPFVLAEVVARVSAVLRRLGRTPSTVQ 133

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + V +D            L   E R+L YL A RG+ V KTQI +A++G  D   + 
Sbjct: 134 IGDLVVDADSAVVVRGNAQVELTATELRLLRYLAAQRGRVVGKTQILTAVWGYED--YDP 191

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N+VE H+S LR+KL    G   + + R LGY +
Sbjct: 192 NLVEVHVSALRRKLEEH-GPRLLHTVRGLGYVL 223


>gi|113970165|ref|YP_733958.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114047645|ref|YP_738195.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113884849|gb|ABI38901.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113889087|gb|ABI43138.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 219

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 16/224 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58
            +L++D  L+  G        G+ ++  +S  +++ L     E  SAI   L    G G+
Sbjct: 3   IMLVEDNELLAQGICLSLAKLGMQVDHLSS--YQQALVGIKNETFSAIVLDLGLPDGNGK 60

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              EL +  RA    +P I ++      T L+  D G DD + KP   RE+ AR+ AI R
Sbjct: 61  ---ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVR 117

Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   + NN    G + +  + R+   + +  PL RRE ++L  L  + G+ + ++Q+   
Sbjct: 118 RQYGLDNNSLNIGALSIDLNTREVTFRDQNVPLSRREFQLLLELAQSAGRVLTRSQLEQL 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            YG +DE V  N +E HI  LRKK+ N+L    + + R +GY++
Sbjct: 178 TYG-WDE-VGSNSIEVHIHHLRKKMANEL----IKTVRGIGYTL 215


>gi|312962223|ref|ZP_07776715.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311283560|gb|EFQ62149.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 226

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 117/223 (52%), Gaps = 10/223 (4%)

Query: 1   MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M VL+ +D  L+  G +A  G  G ++E   +      +  +A  D+  ++  L    E 
Sbjct: 1   MHVLVCEDDELIASGIVAGLGAQGFTVERVATAAAARAMLKAATFDIMVLDLGL--PDED 58

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L+L + +R+   ++P++ ++   S+   +D   +G DD + KP   RE+ AR+  + RR
Sbjct: 59  GLKLLQQLRSQGLEIPVLILTARDSVTNRVDGLQAGADDYLLKPFDLRELAARLQTLLRR 118

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   S N  E G +      R+  + G+   L RRE+ +L+ L+ N+G+ ++  Q+  ++
Sbjct: 119 MAGRSVNLIEHGRLSYDPSSRETLLGGQPVDLSRREQALLQALLHNKGRVLSSEQLKDSV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG F++ +E N +  HI  LR+KL N +    V++ R LGY +
Sbjct: 179 YG-FNDELESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216


>gi|134101321|ref|YP_001106982.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008141|ref|ZP_06566114.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913944|emb|CAM04057.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++++D A +++   A     G ++E        E +  + R DV  ++  L G+ G  V
Sbjct: 5   VLVVEDSAPIREAVAAGLRTAGHTVELRPDGRGVEEVVRTFRPDVVVLDLMLPGRDGFAV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE    +R+ + + ++ ++   S+   L    SG DD V KP    E++ARV A+ RR+ 
Sbjct: 65  LE---TLRSGADLGVVILTARDSVPDRLRGLRSGADDYVVKPFDTAELVARVEAVLRRMG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E   + +  D       G V  L   E R+L YL+A RG+ V+K QIF+ ++G 
Sbjct: 122 RVAATVEVDDLVIDQDAGVAVRAGSVLALTATEWRLLCYLVAQRGRVVSKLQIFTGVWGY 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               V+ N+VE H+S LR+KL    G   V + R  GY++
Sbjct: 182 QSLDVDLNLVEVHVSALRRKLEQH-GRRLVHTVRGRGYAL 220


>gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
 gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
          Length = 226

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  SQVP+I ++   ++   +   DSG DD + KP    E+LAR+ A  R+  
Sbjct: 61  MEVLRRLRRESQVPVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALRKRP 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V    A    GP+ +  +  +  V+G    L RRE  +L YL+ N+ K +++  +   ++
Sbjct: 121 VRQESAVLTAGPLTMDPERHEVTVKGTPVELTRREFDLLRYLLENKEKVISRESLLDNVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   E N V+ +I  LR K+    G   + + R +GY I
Sbjct: 181 G-FDFVGETNAVDVYIRFLRAKIDEAFGIKLIHTVRGVGYVI 221


>gi|153000445|ref|YP_001366126.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160875042|ref|YP_001554358.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|151365063|gb|ABS08063.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160860564|gb|ABX49098.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315267274|gb|ADT94127.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 219

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 14/223 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58
            +L++D  L+  G        G+ ++  NS  +++ LQ    E  SAI   L    G G+
Sbjct: 3   IMLVEDNELLAQGICLSLAKLGMQVDHLNS--YQQALQGVKNESFSAIVLDLGLPDGNGK 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +L+  R  +    +P I ++      T L+  D G DD + KP   RE+ AR+ AI RR
Sbjct: 61  DLLKAWR--QQGVSIPTIVLTANTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRR 118

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + +N    G + +  + R+   + +   L RRE ++L  L  + G+ + ++Q+    
Sbjct: 119 QYGLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLELAQSAGRVLTRSQLEQLT 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG +DE V  N +E HI  LRKKL N+L    + + R +GY++
Sbjct: 179 YG-WDE-VGSNSIEVHIHHLRKKLANEL----IKTVRGIGYTL 215


>gi|325272764|ref|ZP_08139111.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324102104|gb|EGB99603.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 225

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  +E     E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIIDLGL--PGISGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   +R+  +  P++ ++   + Q  ++   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQASLDAQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  I +LR+KL  + GF P+D+ R LGY
Sbjct: 181 -GDEERDPNVIEVLIGRLRRKLEGEQGFKPIDTVRGLGY 218


>gi|328544531|ref|YP_004304640.1| Response regulators consisting of a chemotaxis protein CheY domain
           and a winged-helix DNA-binding domain [polymorphum
           gilvum SL003B-26A1]
 gi|326414273|gb|ADZ71336.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 224

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 8/160 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R  R   ++P++ ++        +   D+G DD V KP H  E+LARV A+ RR    
Sbjct: 63  LERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAAGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           ++N  E GP+R+        V G    L   E R+L YLM ++GK +++T++   +Y   
Sbjct: 123 ASNEIECGPVRLDLRAGRVTVDGHPIKLTSHEYRLLAYLMHHKGKVISRTELTEHLYDQD 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + N VE  + +LRK    KLG +P+++ R LGY +
Sbjct: 183 FDR--DSNTVEVFVGRLRK----KLGGEPIETIRGLGYRM 216


>gi|70731532|ref|YP_261273.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68345831|gb|AAY93437.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 225

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 10/223 (4%)

Query: 1   MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58
           M VL+ +D  L+  G +A     G+++E   +      +   A  DV  ++  L  + G 
Sbjct: 1   MHVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMLGVADFDVMVLDLGLPDEDGL 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           K+L+  R  +   ++P++ ++   S+   +D   +G DD + KP   RE+ AR+  + RR
Sbjct: 61  KLLKQQR--QQGLEIPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRR 118

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   S N  E G +      R+  + G+   L RRE+ +L+ L+ NRG+ ++  Q+  ++
Sbjct: 119 VAGRSVNLIEHGRLTYDPSTRETLLGGQPVDLSRREQSLLQALLHNRGRVLSSEQLKDSV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG F++ +E N +  HI  LR+KL N +    V++ R LGY +
Sbjct: 179 YG-FNDELESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216


>gi|212697044|ref|ZP_03305172.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675819|gb|EEB35426.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 224

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + +   +  ++ +S    ++  ++  D+G +D + KP H  E+ ARV ++ RR  + 
Sbjct: 63  LKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNFIQ 122

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+      I   S  R   V GE   L R+E  ILEYL+ N+G+ +++ ++   ++   
Sbjct: 123 KNSEISFDKIEFDSKNRRVFVDGEELKLTRKEIGILEYLLLNQGRPISQEELIEHVW--- 179

Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D +V+   N +  HIS LRKKL+NKL +DP++++  +GY
Sbjct: 180 DSSVDLLSNSIRVHISALRKKLKNKLNYDPIENRIGVGY 218


>gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
          Length = 220

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 7/162 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           E+ +++R HS +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 63  EVAKMLRNHSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNH 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   N      + V  DG    V  E  PL  +E  IL+ L+ N  K + +  I   ++G
Sbjct: 123 KSWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D + E  ++++HI  LRK    KL    + + + +GY ID
Sbjct: 183 -YDYSGETRMIDTHIKNLRK----KLNLPYIKTVKGIGYKID 219


>gi|325849744|ref|ZP_08170891.1| putative transcriptional regulatory protein CutR [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325479973|gb|EGC83053.1| putative transcriptional regulatory protein CutR [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 224

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + +   +  ++ +S    ++  ++  D+G +D + KP H  E+ ARV ++ RR  + 
Sbjct: 63  LKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNFIQ 122

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+      I   S  R   V GE   L R+E  ILEYL+ N+G+ +++ ++   ++   
Sbjct: 123 KNSEISFDKIEFDSKNRRVFVDGEELKLTRKEIGILEYLLLNQGRPISQEELIEHVW--- 179

Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D +V+   N +  HIS LRKKL+NKL +DP++++  +GY
Sbjct: 180 DSSVDLLSNSIRVHISALRKKLKNKLNYDPIENRIGVGY 218


>gi|89068725|ref|ZP_01156111.1| two-component transcriptional regulator [Oceanicola granulosus
           HTCC2516]
 gi|89045688|gb|EAR51750.1| two-component transcriptional regulator [Oceanicola granulosus
           HTCC2516]
          Length = 244

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 84/152 (55%), Gaps = 2/152 (1%)

Query: 52  FLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
            L  +GE  +   R++R A    P+I + D+ +   T +  ++G DD +  P+   E+ +
Sbjct: 53  LLAAEGEATIAQIRLLRSAGCANPIIVLRDFRNSTHTAEALNAGADDDMTIPLKVIELRS 112

Query: 111 RVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           R+ ++ RR K   + + T G +  + DGRDP V G    L RRE  I ++L  N  + V+
Sbjct: 113 RLNSVLRRAKGHASESVTVGEVTAYFDGRDPVVAGTRVRLSRREHAIFQHLALNPNRIVS 172

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           K  I+ A+YG+ +E   + V++ +I K+RKK+
Sbjct: 173 KAAIYDAVYGMAEEQPLDKVIDVYICKIRKKI 204


>gi|70731816|ref|YP_261558.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5]
 gi|68346115|gb|AAY93721.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5]
          Length = 225

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  +E   + E   +       D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLQTRLTDSGHVVESVANAEEALYQTEQFNHDLAVIDLGLPGMGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRNRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELDARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIIAGPLLLDLNRKQASLDEQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLEGPSGFKPIDTVRGLGY 218


>gi|160892841|ref|ZP_02073630.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50]
 gi|156865400|gb|EDO58831.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50]
          Length = 226

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 104/202 (51%), Gaps = 7/202 (3%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDY 81
           GV  E     + EE L+    ED   I   L   G   +E+ R +R  + +  +I +S  
Sbjct: 22  GVGYEVDTCYDGEEALECILTEDYDLIVLDLNLPGMDGMEILRELRRENEETKVIILSAR 81

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDP 140
             +   ++  D+G +D + KP H +E+ AR+ ++ RR  V  +   E+G I   +  R+ 
Sbjct: 82  GQIADKVEGLDAGANDYMEKPFHIKELEARIRSLTRRKFVQKDVCLESGGISFDTIKREA 141

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLR 198
             +G+   L R+E  ILEYL+ N G+ V++ ++   ++   D +V+     +  H+S LR
Sbjct: 142 YAKGKKVSLTRKENGILEYLLLNLGRPVSQEELMEHVW---DASVDSFSGAIRVHMSSLR 198

Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220
           +KL+  LG+DP+ +K   GY I
Sbjct: 199 RKLKAVLGYDPILNKVGEGYKI 220


>gi|254512408|ref|ZP_05124475.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium
           KLH11]
 gi|221536119|gb|EEE39107.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium
           KLH11]
          Length = 238

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   RI R   + P++ +S     ++ +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRIARV--ETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSVIHTGQVAVNLDAKTVEVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL N  G
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSNATG 206


>gi|240173513|ref|ZP_04752171.1| two-component sensory transduction protein RegX3 [Mycobacterium
           kansasii ATCC 12478]
          Length = 227

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +    +   + A  D S  +  L+     G    ++ + +RA S VP+I ++   S
Sbjct: 24  EGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138
               +   + G DD V KP   RE++AR+ A+ RR      + S+   E+GP+R+  +  
Sbjct: 84  EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDAESSDGILESGPVRMDVERH 143

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V GEV  LP +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ H+    
Sbjct: 144 VVSVNGEVITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198

Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221
           K+LR+K+  DP +     + R LGY ++
Sbjct: 199 KRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|154500437|ref|ZP_02038475.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC
           29799]
 gi|150270789|gb|EDM98081.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 2/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   ++ ++ +S   SL   ++  D G DD + KP    E+ ARV ++ RR  V  + A 
Sbjct: 68  REKPELRVLILSARSSLANRVEGLDLGADDYLTKPFELEELEARVRSLLRRNFVPQSTAV 127

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           T GP+ + +  R+        PL R+E  ILEYLM + GK V++ ++   I+        
Sbjct: 128 TAGPLVLDTRKREISADSTPLPLTRKEFEILEYLMLHPGKTVSQEELLEHIWDTESNPFS 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +V   HIS LRKKL+  LG DP+ +K   GY ++
Sbjct: 188 HSV-RMHISSLRKKLKEALGHDPIATKIGQGYYLE 221


>gi|116618899|ref|YP_819270.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097746|gb|ABJ62897.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 233

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            +LI+D   + D   G++  F D     +G +  EFE      A  D+  I + L+  GE
Sbjct: 7   ILLIEDDVNLADNVVGFLQDFADINAVTDGLDG-EFE---AQEAPYDL--IISDLMLPGE 60

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LEL + +RA+  + P++ ++   SL   ++ F+ G DD + KP H  E+L RV A+ R
Sbjct: 61  TGLELIKNLRANDVETPVLILTAKTSLDDKIEGFNVGADDYLTKPFHREELLVRVKALLR 120

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R  V   +N    G + +  + R  +V G+   L  +E  IL YL  N+   V + QIF 
Sbjct: 121 RSGVYSEDNTLAVGDVMINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++G+ D     NVV  +++ LR+KL      + + + R +G+
Sbjct: 181 RVWGI-DSDTTINVVNIYLNNLRRKLEAVGQNNLIKTLRNIGF 222


>gi|77460156|ref|YP_349663.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384159|gb|ABA75672.1| two-component system response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 226

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 8/222 (3%)

Query: 1   MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M VL+ +D  L+  G +A     G+++E  N+      +   A  DV  ++  L  + + 
Sbjct: 1   MHVLVCEDDELIASGIVAGLTAQGLTVEHVNTASKARAILKVAEFDVMVLDLGLPDE-DG 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +  L ++ +   ++P++ ++   S+   +D   SG DD + KP   RE+ AR+  + RR+
Sbjct: 60  LKLLQQLRQQGLEIPVLILTARDSVTDRVDGLQSGADDYLLKPFDLRELFARLQTLLRRV 119

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S N  E G +      R+  + G    L RRE+ +L+ L+ NRG+ ++  Q+  ++Y
Sbjct: 120 AGRSVNLIEHGALTYDPSSRETTLAGRPVDLSRREQSLLQALLHNRGRVLSTEQLKDSVY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G F++ +E N +  HI      LR+KLG   V++ R LGY +
Sbjct: 180 G-FNDELESNALNVHI----HHLRSKLGKGIVETVRGLGYRL 216


>gi|227431176|ref|ZP_03913231.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353071|gb|EEJ43242.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 235

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            +LI+D   + D   G++  F D     +G +  EFE      A  D+  I + L+  GE
Sbjct: 9   ILLIEDDVNLADNVVGFLQDFADINAVTDGLDG-EFE---AQEAPYDL--IISDLMLPGE 62

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LEL + +RA+  + P++ ++   SL   ++ F+ G DD + KP H  E+L RV A+ R
Sbjct: 63  TGLELIKNLRANDVETPVLILTAKTSLDDKIEGFNVGADDYLTKPFHREELLVRVKALLR 122

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R  V   +N    G + +  + R  +V G+   L  +E  IL YL  N+   V + QIF 
Sbjct: 123 RSGVYSEDNTLAVGDVMINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++G+ D     NVV  +++ LR+KL      + + + R +G+
Sbjct: 183 RVWGI-DSDTTINVVNIYLNNLRRKLEAVGQNNLIKTLRNIGF 224


>gi|290769853|gb|ADD61625.1| putative protein [uncultured organism]
          Length = 225

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 85/155 (54%), Gaps = 6/155 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
           + P++ +S    +   ++  D+G +D + KP H  E+ ARV ++ RR  +  +     G 
Sbjct: 72  ETPVLILSARSEISDKVEGLDAGANDYLAKPFHLAELEARVRSLTRRQFIQRDVCLRCGR 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--EN 188
           +   +  R     G+  PL R+E  +LEYL+ ++G+ V++ ++   ++   D +V+   N
Sbjct: 132 LTFDTKSRLAMADGQPIPLTRKESGVLEYLLLHQGRPVSQEELIEHVW---DSSVDAFSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +  HIS LRKKLR  LG+DP+ ++   GY ++ N
Sbjct: 189 SIRVHISALRKKLRTALGYDPIRNRIGEGYELEEN 223


>gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 230

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 6/168 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +R  S+   VP+I ++        +   D+G DD V KP    E+ ARV A+ R
Sbjct: 62  IEVCRRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++  ++++R   G I +       + QG+   L   E R+L+YLM + G+  ++ Q+  
Sbjct: 122 RIRPGLADDRITVGDIVIDRVAHRVKRQGKEVHLGPTEFRLLDYLMQHPGRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           A++G  D  VE   V+ HI +LRK L   +  DP+ + R  GYS+D +
Sbjct: 182 AVWG-SDVYVEARTVDVHIGRLRKALNGDVDGDPIRTVRSAGYSLDLD 228


>gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
 gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
          Length = 234

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 9/198 (4%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86
           EG  +  +E  +Q +   D+  ++  L   G   +E+ R +RA + VP+I ++   +++ 
Sbjct: 40  EGNGTRAYERIIQENF--DIILLDVML--PGMDGIEICRRVRAVTNVPIIMLTAKDAVED 95

Query: 87  TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAETGPIRVFSDGRDPEV 142
            ++  D G DD + KP    E++AR+    RR  +S    ++R     + +F    + +V
Sbjct: 96  RVEGLDIGADDYITKPFAVPELIARLKNALRRRDISTEDASDRLTVKNLIMFLSRYEVQV 155

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            GE   L +RE  +LEYL+ N+   + + QI   ++G FD   E NVV+ +I  LR KL 
Sbjct: 156 DGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVWG-FDYTGETNVVDVYIRYLRAKLD 214

Query: 203 NKLGFDPVDSKRFLGYSI 220
           ++     + + R +GY +
Sbjct: 215 DRFNKKYIYTVRGVGYVV 232


>gi|238927716|ref|ZP_04659476.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|238884432|gb|EEQ48070.1| response regulator [Selenomonas flueggei ATCC 43531]
          Length = 228

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 102/199 (51%), Gaps = 9/199 (4%)

Query: 26  LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           +EG  +  +E  +Q +   D+  ++  L   G   +E+ R +R  S VP+I ++   +++
Sbjct: 33  IEGNGTRAYERIIQENF--DIILLDVML--PGMDGIEICRRVRTVSNVPIIMLTARDAVE 88

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAETGPIRVFSDGRDPE 141
             ++  D G DD + KP    E++ARV    RR  +S    ++R     + +F    + +
Sbjct: 89  DRVEGLDIGADDYITKPFAVPELIARVRNALRRRDISTDDASDRLTVKNLIMFLSRYEVQ 148

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           V GE   L +RE  +LEYL+ N+   + + QI   ++G FD   E NVV+ +I  LR KL
Sbjct: 149 VDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVWG-FDYTGETNVVDVYIRYLRAKL 207

Query: 202 RNKLGFDPVDSKRFLGYSI 220
            ++     + + R +GY +
Sbjct: 208 DDRFHKKYIYTVRGVGYVV 226


>gi|221215180|ref|ZP_03588146.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1]
 gi|221164864|gb|EED97344.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1]
          Length = 224

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   + GE  PL  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENS-GVAIV-TLRGLGYLLE 219


>gi|26987921|ref|NP_743346.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24982631|gb|AAN66810.1|AE016310_2 transcriptional regulatory protein PhoP [Pseudomonas putida KT2440]
          Length = 225

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  +E     E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGL--PGISGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   +R+  +  P++ ++   + Q  ++   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQALALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL  + GF P+D+ R LGY
Sbjct: 181 -GDEERDPNVIEVLVGRLRRKLEGERGFKPIDTVRGLGY 218


>gi|161520888|ref|YP_001584315.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344938|gb|ABX18023.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
          Length = 222

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 58  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 117

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   + GE  PL  RER +LE L+   G+ + K  +   I+
Sbjct: 118 LGHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIF 177

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 178 GL-DESVNADAIEIYVYRLRKKLENS-GVAIV-TLRGLGYLLE 217


>gi|189352929|ref|YP_001948556.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189336951|dbj|BAG46020.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 224

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   + GE  PL  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENS-GVAIV-TLRGLGYLLE 219


>gi|167584532|ref|ZP_02376920.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 223

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   +++ E GP+   S  R   + GE  PL  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSKVECGPLAFDSVDRSFRLAGEALPLTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENS-GVAIV-TLRGLGYLLE 219


>gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 10/207 (4%)

Query: 22  DGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIG 77
           +G+ ++G+ +    + EE L+    E+   I   L   G   LE+ R  R  ++  P++ 
Sbjct: 18  EGLRMDGYETDTCFDGEEGLELCMTENYDLILLDLNLPGIDGLEILRQFRTFNTNTPVLI 77

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSD 136
           +S    +Q  ++  D G +D + KP H  E+ AR+ ++ RR  +  +       I   + 
Sbjct: 78  LSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKFIQEDVCLRCSRITFDTR 137

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHI 194
            R+  V G    L R+E  +LEY + +R + ++  ++   I  L+D +V    N +  HI
Sbjct: 138 TREASVDGTPLALTRKESALLEYFLLHRNRIISPEEM---IEHLWDGSVNSFSNSIRVHI 194

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S LRKKLR  LG+DP+ +K   GY ++
Sbjct: 195 SSLRKKLRTALGYDPIQNKIGQGYILE 221


>gi|226324678|ref|ZP_03800196.1| hypothetical protein COPCOM_02463 [Coprococcus comes ATCC 27758]
 gi|225207126|gb|EEG89480.1| hypothetical protein COPCOM_02463 [Coprococcus comes ATCC 27758]
          Length = 237

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 116/227 (51%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR----EDVSAIEAFLIGKG 57
            ++I+D  LV+ G +     D + L+G+N++  +   ++  R    E +  +    +  G
Sbjct: 5   ILVIEDDDLVRQGIV-----DILELKGWNAVAAKSCSEALVRIRGEEYMLYVLDMKLPDG 59

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             ++ L R IR ++  P++ +S Y S +  ++ F++G +D V KP    E +AR+ A+ R
Sbjct: 60  NGIM-LCREIRRYTDNPILFLSAYDSEEFIVEGFEAGANDYVIKPFRTFEFIARIKALLR 118

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R  + N +     I+      D + Q     G    L R E +IL  L+AN    VA+  
Sbjct: 119 RTGMQNGKKVKKGIKSGEYELDLQKQILQKDGVRIDLTRTEYQILCSLLANAPNLVAREF 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +   I+   +  +++N +  H+++LRKKL  +   DP+++KR +GY+
Sbjct: 179 LLDTIWDFNENYIDDNTLSVHMNRLRKKLTAENEQDPIETKRGVGYA 225


>gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC
           19977]
 gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus]
          Length = 228

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 27/223 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+ A   +DG S       EFE      A  D+  ++  L G      ++ + +RA
Sbjct: 21  LRKEGFEATIVNDGPSALA----EFER-----AGADIVLLDLMLPGMSGT--DVCKQLRA 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126
            S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   S   A   
Sbjct: 70  KSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDSEETASGD 129

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E GP+R+  D     V GE   LP +E  +LEYL+ N G+ + + Q+   ++G  D 
Sbjct: 130 GVLEAGPVRMDVDRHTVSVNGEAITLPLKEFDLLEYLIRNSGRVLTRGQLIDRVWG-ADY 188

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221
             +   ++ H+    K+LR+K+  DP +     + R LGY ++
Sbjct: 189 VGDTKTLDVHV----KRLRSKIEADPANPVHLVTVRGLGYKLE 227


>gi|331701040|ref|YP_004397999.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128383|gb|AEB72936.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 230

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 3/151 (1%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAE 127
           H  +P++ ++   +L   +  F+ G DD + KP H  E+L RV A+ +R      +N   
Sbjct: 73  HLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALLKRSGHLGDDNTLS 132

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GP +V    R  EV G+   L  +E  +L Y + N    + K QIF  ++G F+     
Sbjct: 133 VGPFKVNLSNRIVEVNGKELALNGKEFDLLVYFIQNPDTIITKDQIFDRLWG-FESETAI 191

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +VVE ++S LRKK++      P+ + R +GY
Sbjct: 192 SVVEVYMSNLRKKIKQSSSLQPIKTLRNVGY 222


>gi|171740938|gb|ACB54965.1| PhoP [Pseudomonas fluorescens]
          Length = 225

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  ++   + E   +       D++ I+  L G     L
Sbjct: 3   LLVVEDEALLRHHLQTRLSDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLPGISG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R+  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  E   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGDEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLEAPAGFKPIDTVRGLGY 218


>gi|332639030|ref|ZP_08417893.1| two-component response regulator [Weissella cibaria KACC 11862]
          Length = 231

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L +    +  +P++ ++    L   +  F+ G D+ + KP +  E+LAR+  + R   V 
Sbjct: 67  LKKAKELYPTLPILMLTAKGELSDKMQGFNLGADEYITKPFYKEELLARLKTLLRHAGVL 126

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E G ++VF D     V  E   L  RE  +L YLM + G+ V K QIF  ++G 
Sbjct: 127 GQDGALEVGNVQVFIDQHRVLVNNEEISLQGREFGLLVYLMQHVGQIVTKDQIFDRLWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD      VVE ++S LRK LRN      + + R +GY+++
Sbjct: 186 FDSDTSLTVVEVYMSNLRKNLRNADAQVNIKTLRNVGYTLN 226


>gi|26990917|ref|NP_746342.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985936|gb|AAN69806.1|AE016619_4 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 227

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L +D  L+  G  A     G++++   +      +  +A+ DV  ++  L  + G K+
Sbjct: 3   VLLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGLPDEDGLKL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R+      +P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR+ 
Sbjct: 63  LH--RLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  E GP+R      +  + G+   L RRE+ +L+ L+ N G+ ++  Q+   +YG
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE VE N +  HI  LR+KL N +    V++ R LGY +
Sbjct: 181 FSDE-VESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216


>gi|49081832|gb|AAT50316.1| PA1179 [synthetic construct]
          Length = 226

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++     E   +  S    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGL--PGMSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R+  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  E GP+ +  + +   V+ +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R  GY
Sbjct: 181 -DDEERDANVIEVLVGRLRRKLEACGGFKPIDTVRGQGY 218


>gi|15596376|ref|NP_249870.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAO1]
 gi|107100628|ref|ZP_01364546.1| hypothetical protein PaerPA_01001654 [Pseudomonas aeruginosa PACS2]
 gi|116049111|ref|YP_792087.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892857|ref|YP_002441726.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           LESB58]
 gi|254234312|ref|ZP_04927635.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           C3719]
 gi|254239547|ref|ZP_04932869.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192]
 gi|296390450|ref|ZP_06879925.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAb1]
 gi|313106153|ref|ZP_07792406.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           39016]
 gi|9947104|gb|AAG04568.1|AE004548_2 two-component response regulator PhoP [Pseudomonas aeruginosa PAO1]
 gi|115584332|gb|ABJ10347.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166243|gb|EAZ51754.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           C3719]
 gi|126192925|gb|EAZ56988.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192]
 gi|218773085|emb|CAW28897.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           LESB58]
 gi|310878908|gb|EFQ37502.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           39016]
          Length = 225

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++     E   +  S    D++ I+  L G     L
Sbjct: 3   LLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGLPGMSG--L 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R+  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  E GP+ +  + +   V+ +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R  GY
Sbjct: 181 -DDEERDANVIEVLVGRLRRKLEACGGFKPIDTVRGQGY 218


>gi|152984274|ref|YP_001349554.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7]
 gi|150959432|gb|ABR81457.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7]
          Length = 225

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++     E   +  S    D++ ++  L G     L
Sbjct: 3   LLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVVDLGLPGMSG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R+  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRELRSQGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  E GP+ +  + +   V+ +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFVQSTIEAGPLLLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R  GY
Sbjct: 181 -DDEERDANVIEVLVGRLRRKLEACGGFKPIDTVRGQGY 218


>gi|304438293|ref|ZP_07398234.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368659|gb|EFM22343.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 228

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 9/199 (4%)

Query: 26  LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           +EG  +  +E  +Q +   D+  ++  L   G   +E+ R +R  S VP+I ++   +++
Sbjct: 33  IEGNGTRAYERIIQENF--DIILLDVML--PGMDGIEICRRVRTVSNVPIIMLTARDAVE 88

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAETGPIRVFSDGRDPE 141
             ++  D G DD + KP    E++AR+    RR  +S    ++R     + +F    + +
Sbjct: 89  DRVEGLDIGADDYITKPFAVPELIARIRNALRRRDISTDDASDRLTVKNLIMFLSRYEVQ 148

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           V GE   L +RE  +LEYL+ N+   + + QI   ++G FD   E NVV+ +I  LR KL
Sbjct: 149 VDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVWG-FDYTGETNVVDVYIRYLRAKL 207

Query: 202 RNKLGFDPVDSKRFLGYSI 220
            ++     + + R +GY +
Sbjct: 208 DDRFHKKYIYTVRGVGYVV 226


>gi|118619653|ref|YP_907985.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183980840|ref|YP_001849131.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
 gi|118571763|gb|ABL06514.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183174166|gb|ACC39276.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
          Length = 227

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +    +   + A  D S  +  L+     G    ++ + +RA S VP+I ++   S
Sbjct: 24  EGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138
               +   + G DD V KP   RE++AR+ A+ RR      +VS+   E+GP+R+  +  
Sbjct: 84  EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEVSDGVLESGPVRMDVERH 143

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G+   LP +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ H+    
Sbjct: 144 VVSVNGDAITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198

Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221
           K+LR+K+  DP +     + R LGY ++
Sbjct: 199 KRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|46203467|ref|ZP_00208981.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 220

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 2/132 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP    E++AR  A+ RRL+V        G +   +  R   ++G   P+
Sbjct: 88  LDAGADDYVPKPFEPVELVARARAVIRRLQVDRKGVLRIGNLSFDTAARSVSIEGHPIPI 147

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           PRRE  +LE L+   G+   +  + +A YG FD+ ++ N +++HIS+LRK+LR       
Sbjct: 148 PRRELALLEALIRRAGQVTMRETLEAAAYG-FDDEIQSNAIDAHISRLRKRLRAADCSVA 206

Query: 210 VDSKRFLGYSID 221
           +   R LGY ++
Sbjct: 207 IKPLRGLGYVLE 218


>gi|148271879|ref|YP_001221440.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829809|emb|CAN00728.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 222

 Score = 79.0 bits (193), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   ++L   IR  S   +I ++   +++  L  F  GVDD + KP    E++ARV A+ 
Sbjct: 60  GPSGIQLAERIRRWSDASVIMLTARDAVEDRLRGFGQGVDDYIVKPFALAELVARVGAVL 119

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR     +  E G + V  D       GE   L   E ++L YL A+RG+ ++KTQ+ + 
Sbjct: 120 RRRGRLASVVEIGDLLVDPDSGLARRGGEQLELTSIEFQLLAYLAAHRGRTLSKTQLLTQ 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D+  + N+VE HIS LRKK+  + G   + + R LGY ++
Sbjct: 180 VWG-YDQT-DPNLVEVHISALRKKMEAR-GPRLLHTVRGLGYRVE 221


>gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88]
 gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88]
          Length = 222

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 89/159 (55%), Gaps = 7/159 (4%)

Query: 67  IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           IR H++ V +I ++    ++  +   D G +D + KP H  E+ AR+ ++ RR  V  + 
Sbjct: 66  IREHNKTVNIIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRRKTVQQDA 125

Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               GPI+  ++ R  ++  E F L ++E  ILEYL+ N+ + V++ +I   ++G   ++
Sbjct: 126 VIVCGPIKFDTNSRTVQIHDENFKLTKKETTILEYLILNKSRIVSQEEILDHVWG---DS 182

Query: 185 VE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           V+   N V  H+S LR+KL++K G + + +    GY ID
Sbjct: 183 VDFLSNTVRVHMSTLRRKLKDKAGCNIIKNVIGEGYIID 221


>gi|229591797|ref|YP_002873916.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363663|emb|CAY51014.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 226

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 10/223 (4%)

Query: 1   MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M VL+ +D  L+  G +A     G ++E   +      +  +A  D+  ++  L    E 
Sbjct: 1   MHVLVCEDDELIASGIVAGLTAQGFTVERVATAGAARAMLKAATFDIMVLDLGL--PDED 58

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L+L +  R+   ++P++ ++   S+   +D   +G DD + KP   RE+ AR+  + RR
Sbjct: 59  GLKLLQQQRSQGLEIPVLILTARDSVTNRVDGLQAGADDYLLKPFDLRELAARLQTLLRR 118

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   S N  E G +      R+  + G+   L RRE+ +L+ L+ N+G+ ++  Q+  ++
Sbjct: 119 VAGRSVNLIEHGRLAYNPSSRETFLGGQPVDLSRREQALLQALLHNKGRVLSSEQLKDSV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG  DE +E N +  HI  LR+KL N +    V++ R LGY +
Sbjct: 179 YGFNDE-LESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216


>gi|159185897|ref|NP_356842.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159141031|gb|AAK89627.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 224

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 2/146 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132
           P+I ++    L   ++  + G DD + KP    E+LAR+ A+ RR        A  G + 
Sbjct: 74  PVIVLTAQGGLADRINGLNLGADDYLAKPFAVEELLARIRALMRRPAGTVKMTARLGALE 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
              + R+  ++GE  PL RRE  ILE L+  +G+ V ++ +  A+Y  FD+ ++ N ++S
Sbjct: 134 FCFETREVRIKGEFLPLTRRELLILEALLRRQGRTVLRSMLEEAVYN-FDDEIQSNALDS 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218
           HIS+LR+KL        V   R +GY
Sbjct: 193 HISRLRRKLAAADAGVEVHGIRGVGY 218


>gi|332307268|ref|YP_004435119.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174597|gb|AEE23851.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 226

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 2/149 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
            P++ ++     Q  ++  D+G DD + KP  + E+LARV A+ RR    +N   E GPI
Sbjct: 73  CPILILTARDRWQEKVEGLDAGADDYLTKPFQNEELLARVKALIRRSAGQANPTIELGPI 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            + +      V G+   L   E ++ EYL+ N  K V+KT++   IY   D  ++ NV+E
Sbjct: 133 SLNTLSEQVSVSGQDIELTAYEYKVFEYLLLNPKKVVSKTELTEHIYDQ-DFDLDSNVIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + +LRKKL  +   +P+++ R  GY I
Sbjct: 192 VFVGRLRKKLDPEGKINPIETMRGRGYRI 220


>gi|254253937|ref|ZP_04947254.1| hypothetical protein BDAG_03222 [Burkholderia dolosa AUO158]
 gi|124898582|gb|EAY70425.1| hypothetical protein BDAG_03222 [Burkholderia dolosa AUO158]
          Length = 224

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   + GE  PL  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LR+KL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRRKLENT-GVSIV-TLRGLGYLLE 219


>gi|126651117|ref|ZP_01723327.1| transcription response regulator-like protein [Bacillus sp. B14905]
 gi|126591955|gb|EAZ86021.1| transcription response regulator-like protein [Bacillus sp. B14905]
          Length = 220

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +++R  S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 63  EVAKMLRNQSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNH 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N  N      + V  DG    V  E  PL  +E  IL+ L+ N  K + +  I   ++G
Sbjct: 123 KNWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D + E  ++++HI  LRK    KL    + + + +GY ID
Sbjct: 183 -YDYSGETRMIDTHIKNLRK----KLNLPYIKTVKGIGYKID 219


>gi|23012185|ref|ZP_00052333.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 225

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           K + V  L    RA  + P+I ++        +D FD+G DD V KP H  E++ARV AI
Sbjct: 56  KADGVTVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAI 115

Query: 116 YRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR    ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++ 
Sbjct: 116 LRRAAGHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELT 175

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +Y   FD   + N +E  + +LRK    KL  D + + R LGY ID N
Sbjct: 176 EHLYDQDFDR--DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLIDPN 219


>gi|126735860|ref|ZP_01751605.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126715047|gb|EBA11913.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 220

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           F+L++D   + D  +A    DG +++   +L E +EWL + A  D+  ++  L  G G +
Sbjct: 3   FLLVEDNNELGDAVVARLSLDGHAVDHAKTLAEADEWL-AVADYDLMLLDVMLPDGDGRE 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L   R  R   ++P+I ++    +   +D  D G DD + KP    E+ AR  A+ RR 
Sbjct: 62  FL---RKTRTTERMPVIVLTARSQVSDRVDTLDLGADDYITKPFDFGELEARCRAVLRRR 118

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G       G      GE  PL  RE R+LE    N+G+ ++K+Q+   ++
Sbjct: 119 GTPTPALIPLGDALFDPSGGTLSHDGETKPLRNRELRLLEVFARNKGQILSKSQLLDRLF 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              D  V EN +E ++++LRK+L    G + +++ R +GY ++W
Sbjct: 179 SQ-DAEVSENAIEVYVARLRKRL-FAAGVE-IETVRGVGYRMNW 219


>gi|109899149|ref|YP_662404.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109701430|gb|ABG41350.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 226

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 14/209 (6%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQ 72
           GY     DDG             +L S    D++ I+  L +  G +V++  R  + +  
Sbjct: 24  GYSVDLADDGAK---------ALFLLSEHPYDLAIIDIGLPVMDGFEVIQKAR--KNNVS 72

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
            P++ ++     Q  ++  D+G DD + KP  + E+LARV A+ RR    +N   E GPI
Sbjct: 73  CPILILTARDRWQEKVEGLDAGADDYLTKPFQNEELLARVKALIRRSAGQANPTIELGPI 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            + +      V G    L   E ++ EYL+ N  K V+KT++   IY   D  ++ NV+E
Sbjct: 133 SLNTLSEQVSVSGTDIELTAYEYKVFEYLLLNPKKVVSKTELTEHIYDQ-DFDLDSNVIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + +LRKKL  +   +P+++ R  GY I
Sbjct: 192 VFVGRLRKKLDPQGSINPIETMRGRGYRI 220


>gi|330811228|ref|YP_004355690.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379336|gb|AEA70686.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 225

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  ++   + E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLQTRLTDSGHVVQAVANAEEALYQVREFNHDLAVIDLGL--PGISGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R+  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  E   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLEAPAGFKPIDTVRGLGY 218


>gi|325275490|ref|ZP_08141410.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324099375|gb|EGB97301.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 227

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  L+  G  A     G++++   +      +  +A+ DV  ++  L    E  L
Sbjct: 3   VLLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMVLDLGL--PDEDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   + +P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR+ 
Sbjct: 61  KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  E GP+R      +  + G+   L RRE+ +L+ L+ N G+ ++  Q+   +YG
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQQVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE VE N +  HI  LR+KL N +    V++ R LGY +
Sbjct: 181 FSDE-VESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216


>gi|291536536|emb|CBL09648.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291538595|emb|CBL11706.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 215

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 91/161 (56%), Gaps = 6/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + + + +  ++ +S    +   ++  D+G +D + KP H +E+ AR+ ++ RR  V 
Sbjct: 52  LKELRQRNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFVQ 111

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   E+G I+  +  R+   +G++  L R+E  ILEYL+ N G+ V++ ++   ++   
Sbjct: 112 KDVCLESGGIKFDTVRREAYAKGKMISLTRKENGILEYLLLNPGRPVSQEELMEHVW--- 168

Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D +V+     +  H+S LRKKL+ +LG+DP+ +K   GY I
Sbjct: 169 DASVDSFSGAIRVHMSSLRKKLKAELGYDPILNKVGEGYKI 209


>gi|260433792|ref|ZP_05787763.1| cell cycle transcriptional regulator CtrA [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417620|gb|EEX10879.1| cell cycle transcriptional regulator CtrA [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 238

 Score = 78.6 bits (192), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   RI R   + P++ +S     ++ +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRIARV--ETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG I V  D +  EV G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSIIRTGRIAVNLDAKTVEVDGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL N  G
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSNATG 206


>gi|170751369|ref|YP_001757629.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657891|gb|ACB26946.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 225

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           K + V  L +  RA  + P+I ++        +D FD+G DD V KP H  E++ARV A+
Sbjct: 56  KADGVTVLQKWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAL 115

Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR    + ++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++ 
Sbjct: 116 LRRAAGHATSQIACGPVTLDTRSGKVFVDGAQVKLTSHEYRLLSYLMHHTGRVVSRAELT 175

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +Y   FD   + N +E  + +LRK    KL  D + + R LGY +D N
Sbjct: 176 EHLYDQDFDR--DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLVDPN 219


>gi|188580664|ref|YP_001924109.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179344162|gb|ACB79574.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 225

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           K + V  L    RA  + P+I ++        +D FD+G DD V KP H  E++ARV AI
Sbjct: 56  KADGVTVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAI 115

Query: 116 YRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR    ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++ 
Sbjct: 116 LRRAAGHASSQISCGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELT 175

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +Y   FD   + N +E  + +LRK    KL  D + + R LGY ID N
Sbjct: 176 EHLYDQDFDR--DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLIDPN 219


>gi|297572194|ref|YP_003697968.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932541|gb|ADH93349.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 229

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 103/222 (46%), Gaps = 30/222 (13%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIR 68
           L +DGY  L   +GV           + L    + DV  ++  L    GE V    R IR
Sbjct: 22  LNRDGYDVLTASNGV-----------QALDVYKKADVILLDLMLPEMSGEDVC---RKIR 67

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            HS VP+I ++   S    +   + G DD V KP  +RE++AR+ AI RR        E 
Sbjct: 68  QHSSVPIIMVTAKESEIDKVVGLEIGADDYVTKPYSYRELVARIRAILRRTGAEPATEEP 127

Query: 129 GPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            PI +     DP      V  +   +P RE  +LEYLM N G+ V + QI   I+G+   
Sbjct: 128 QPITIGRVTIDPVAHVVYVDHQPISMPLREYELLEYLMENAGRVVTRGQILDRIWGI-GY 186

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSI 220
             +   ++ H+    K++R+K+  DPV+     + R +GY I
Sbjct: 187 VGDSKTLDVHV----KRIRSKIEKDPVNPSLLVTVRGVGYKI 224


>gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 229

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL R +RA HS+  ++ +S   ++   +   D+G DD + KP    E+ ARV  + RR 
Sbjct: 60  LELLRTLRAQHSETKVLILSARSAVSDRIVGLDAGADDYLVKPFAFGELEARVRNLLRRE 119

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G +R  +  R    +G    L ++E  ILEYLM ++G+ V+  ++ S  +
Sbjct: 120 YTQGETFLDCGDLRFDTTTRRLSAKGVEISLTKKETAILEYLMRHKGRVVSSEELLSHAW 179

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D +V+   N V  HI  LRKKLR+ LG DP+ +K   GY
Sbjct: 180 ---DSSVDPFSNSVRVHICSLRKKLRSVLGCDPISNKIGEGY 218


>gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
 gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
          Length = 225

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 10/204 (4%)

Query: 22  DGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIG 77
           +G+ ++G+ +   L+ +E L+    E+   I   L   G   L++ R  R  +S  P++ 
Sbjct: 18  EGLRMDGYETDTCLDGDEGLELCTTENYDLILLDLNLPGIDGLDILRQFRETNSSTPVLI 77

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSD 136
           +S    ++  ++  D G +D + KP H  E+ AR+ ++ RR  +  N   + G I   + 
Sbjct: 78  LSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRRFIQENVCLKCGHISFDTR 137

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHI 194
            R   +  E   L R+E  +LEY M ++ + ++  ++   I+   D +V    N +  HI
Sbjct: 138 TRKAHIDSEELSLTRKESALLEYFMLHQNRIISPEELIEHIW---DGSVNSFSNSIRVHI 194

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGY 218
           S LRKKLR  LG DP+ +K   GY
Sbjct: 195 SSLRKKLRAALGNDPIQNKVGQGY 218


>gi|254560526|ref|YP_003067621.1| phoP: DNA-binding response regulator in two-component regulatory
           system with PhoQ [Methylobacterium extorquens DM4]
 gi|254267804|emb|CAX23651.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           DM4]
          Length = 225

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           K + V  L    RA  + P+I ++        +D FD+G DD V KP H  E++ARV AI
Sbjct: 56  KADGVTVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAI 115

Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR    ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++ 
Sbjct: 116 LRRAAGHASSQIACGPVTLDTRSGRVFVDGTPIKLTSHEYRLLSYLMHHTGRVVSRAELT 175

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +Y   FD   + N +E  + +LRK    KL  D + + R LGY ID N
Sbjct: 176 EHLYDQDFDR--DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLIDPN 219


>gi|104782688|ref|YP_609186.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95111675|emb|CAK16396.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 227

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  L+  G  A     G++++   S      +  +A+ DV  ++  L    E  L
Sbjct: 3   VLLCEDDDLIASGICAGLSAQGLTVDRVASASQARQMLQAAQFDVMILDLGL--PDEDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   + +P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR+ 
Sbjct: 61  KLLRRLRQQGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  E GP+          + G    L RRE+ +L+ L+ N G+ ++  Q+   +YG
Sbjct: 121 GRAVNVIEHGPLCYDPSSCVATLAGAPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE VE N +  HI  LR+KL N +    V++ R LGY +
Sbjct: 181 FSDE-VESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216


>gi|163850840|ref|YP_001638883.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218529660|ref|YP_002420476.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240137967|ref|YP_002962439.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
 gi|163662445|gb|ABY29812.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218521963|gb|ACK82548.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240007936|gb|ACS39162.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
          Length = 225

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           K + V  L    RA  + P+I ++        +D FD+G DD V KP H  E++ARV AI
Sbjct: 56  KADGVTVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAI 115

Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR    ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++ 
Sbjct: 116 LRRAAGHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELT 175

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +Y   FD   + N +E  + +LRK    KL  D + + R LGY ID N
Sbjct: 176 EHLYDQDFDR--DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLIDPN 219


>gi|13475293|ref|NP_106857.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14026044|dbj|BAB52643.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 223

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 105/211 (49%), Gaps = 13/211 (6%)

Query: 19  FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78
            GD G +++   +LE      S A  ++  +E  ++  G+ +  L ++      VP + +
Sbjct: 20  LGDSGFAVDVVPTLEQASSAFSCASYEILLLE-LVLPDGDGLDWLKQLRGEGHSVPALIL 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD-- 136
           SD   L+  +  F+ G DD + KP++  E++AR+ A+ RR     +   T PI VF +  
Sbjct: 79  SDVDDLEKRIAIFNGGADDFLLKPVYTNELIARMRAVLRR-----STQMTAPIIVFGNLH 133

Query: 137 ----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
               GR   V G    + RRE  ILE+L+   G+ V ++Q+   +Y  F++ V  N +E 
Sbjct: 134 FDPIGRQVSVAGYPLTVARRELCILEHLLNRAGRIVPRSQLEDHLYS-FNDEVSANALEV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            I +LR+ L +      + + R +GY ++ +
Sbjct: 193 GIYRLRRYLSSSNATPRIKTVRGIGYILECD 223


>gi|313113436|ref|ZP_07799025.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624163|gb|EFQ07529.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 263

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 90/164 (54%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +R H  +  ++ +S    +   ++  D+G +D ++KP H  E+ ARV ++ RR 
Sbjct: 98  MQVLRTLRRHDLETCVLILSARSEIADKVEGLDAGANDYLSKPFHLAELEARVRSLTRRK 157

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +     G +   +  R   V G+   L R+E  +LEYL+ ++G+ V++ ++   ++
Sbjct: 158 FIQQDVCLCCGRLSFNTRSRVAAVDGQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVW 217

Query: 179 GLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D +V+   N +  HIS LRKKLR  LG+DP+ ++   GY I
Sbjct: 218 ---DGSVDSFSNSIRVHISALRKKLRAALGYDPIRNRIGEGYEI 258


>gi|291548336|emb|CBL21444.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 225

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 10/204 (4%)

Query: 22  DGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIG 77
           +G+ ++G+      + +E L+    E+   I   L   G   LE+ R  R + +  P++ 
Sbjct: 18  EGLRMDGYEADTCFDGDEGLELCLVENYDLILLDLNLPGVDGLEILRQFRESDTSTPVLI 77

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSD 136
           +S    +Q  ++  D G +D + KP H  E+ AR+ ++ RR  +  +   + G I   + 
Sbjct: 78  LSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKFIQQDVCLQCGRISFDTR 137

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHI 194
            R   + G    L R+E  +LEY + ++ + ++  ++   I+   D +V    N +  HI
Sbjct: 138 TRKASIDGLPLSLTRKESSLLEYFLLHQNRIISPEEMIEHIW---DGSVNSLSNSIRVHI 194

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGY 218
           S LRKKLR  LGFDP+ +K   GY
Sbjct: 195 SSLRKKLRTALGFDPIQNKIGQGY 218


>gi|56696561|ref|YP_166918.1| DNA-binding response regulator CtrA [Ruegeria pomeroyi DSS-3]
 gi|56678298|gb|AAV94964.1| DNA-binding response regulator CtrA [Ruegeria pomeroyi DSS-3]
          Length = 238

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     ++ +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRMSRI--ETPILILSGVDDTESKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG I V  D +  EV+G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSVIRTGKISVNLDAKTVEVEGQPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL N  G
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSNATG 206


>gi|217966935|ref|YP_002352441.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217336034|gb|ACK41827.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 224

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 19/170 (11%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           + L + +RA + Q P++ ++    ++  +   +SG DD + KP  + E+LAR+ A+ RR 
Sbjct: 62  ISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRRP 121

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAK 170
                  LKV +   +T   RVF        +G++   L  +E  ILEYLM N  + ++K
Sbjct: 122 KNLMPTVLKVKDISLDTVSKRVF--------RGDIEILLTNKEFAILEYLMRNVNRIISK 173

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            QI S ++G ++     NVVE+HI  LRKKL  K   + +++ R +GY I
Sbjct: 174 EQIISHVWG-YESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRI 222


>gi|148546876|ref|YP_001266978.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148510934|gb|ABQ77794.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|313497928|gb|ADR59294.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 227

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  L+  G  A     G++++   +      +  +A+ DV  ++  L    E  L
Sbjct: 3   VLLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMILDLGL--PDEDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   + +P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR+ 
Sbjct: 61  KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  E GP+R      +  + G+   L RRE+ +L+ L+ N G+ ++  Q+   +YG
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE VE N +  HI  LR+KL N +    V++ R LGY +
Sbjct: 181 FSDE-VESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216


>gi|118588829|ref|ZP_01546237.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Stappia aggregata IAM 12614]
 gi|118438815|gb|EAV45448.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Stappia aggregata IAM 12614]
          Length = 218

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 6/157 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R  +QVP+I ++    +   ++  DSG DD + KP    E+ AR++A+ RR   +
Sbjct: 63  LKTLRRGGNQVPVIIVTAQDQVAMRIEGLDSGADDYLVKPFDLAELRARLSAVARRYAGA 122

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N   T G I +    +  E  G+   L  RE  +LE L+ +RG  V+K+ I  ++Y  F
Sbjct: 123 PNPETTLGDITLDLTRKSAERAGKPVDLTSREWAVLERLLRHRGGIVSKSDIEESLYA-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              VE N VE ++S+LRK    K+G D V + R LGY
Sbjct: 182 GAEVESNTVEVYVSRLRK----KIGADAVTTVRGLGY 214


>gi|218134956|ref|ZP_03463760.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990341|gb|EEC56352.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC
           43243]
          Length = 239

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 90/162 (55%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL + +R ++ +  ++ +S    +   ++  D+G +D + KP H +E+ AR+ ++ RR 
Sbjct: 73  MELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 132

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V N+   + G I+  +  R    + E   L R+E  ILEYL+ N G+ V++ ++   ++
Sbjct: 133 FVQNDICLKCGEIKFDTIKRKAYAKEEPVLLTRKENGILEYLLINIGRPVSQEELIEHVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               ++     +  H+S LRKKL+ KLG+DP+ +K   GY I
Sbjct: 193 DATADSFS-GAIRVHMSSLRKKLKAKLGYDPIQNKVGEGYKI 233


>gi|323528206|ref|YP_004230358.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323385208|gb|ADX57298.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 224

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 4/157 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R    VP+I ++ + S    +D F +G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  LARLRRRGDNVPVIMLTAHGSTDDKVDCFSTGADDYVVKPFDARELVARIKALIRRQSGG 122

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   T G ++  SD R+         L RRE  +LE LM  +GK V+K  +  +++ L 
Sbjct: 123 MSSCLTCGDLQYLSDTREFFHNDARLALRRREHTVLETLMLRKGKTVSKAVLMESVFSLD 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           DE    + ++ +I +LRK L N      + + R LGY
Sbjct: 183 DEP-SADAIDIYIHRLRKHLSNSSA--QITTLRGLGY 216


>gi|41410081|ref|NP_962917.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118466224|ref|YP_883789.1| DNA-binding response regulator [Mycobacterium avium 104]
 gi|254777097|ref|ZP_05218613.1| DNA-binding response regulator [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|41398914|gb|AAS06533.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167511|gb|ABK68408.1| DNA-binding response regulator [Mycobacterium avium 104]
          Length = 227

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +    +   + A  D +  +  L+     G    ++ + +RA S VP+I ++   S
Sbjct: 24  EGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138
               +   + G DD V KP   RE++AR+ A+ RR      ++S+   E+GP+R+  +  
Sbjct: 84  EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEISDGVLESGPVRMDVERH 143

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G+   LP +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ H+    
Sbjct: 144 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198

Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221
           K+LR+K+  DP +     + R LGY ++
Sbjct: 199 KRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|310829976|ref|YP_003962333.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308741710|gb|ADO39370.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 13/209 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58
           + V+ DDR  +      +  ++G + EG F  +E    L+S    D+  ++  L  K G+
Sbjct: 6   ILVVEDDRE-INSMLCEMLDENGYAAEGAFTGMEGLSRLRSGDY-DLLILDLMLPYKSGD 63

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            VL+    +R+ S +P+I IS   ++Q  LD F  G DD + KP    E+L RV A+ RR
Sbjct: 64  AVLQ---ELRSFSSLPVIVISAKDTVQNKLDLFHMGADDYLTKPFDLDEVLVRVEAVLRR 120

Query: 119 LKVSN-NRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              S   RA    + G + V ++ +   V G+   L  +E  ILE LM    K  +K  +
Sbjct: 121 CGSSEAQRAPEILQAGKLAVDTESKTASVDGQELVLTAKEYGILELLMRYPHKVFSKANL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR 202
           F +I+   + A E+N +  H+S LR KL+
Sbjct: 181 FESIWN-EEYACEDNTLNVHMSNLRNKLK 208


>gi|254821074|ref|ZP_05226075.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC
           13950]
          Length = 227

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +    +   + A  D +  +  L+     G    ++ + +RA S VP+I ++   S
Sbjct: 24  EGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138
               +   + G DD V KP   RE++AR+ A+ RR      ++S+   E+GP+R+  +  
Sbjct: 84  EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGEDDSEISDGVLESGPVRMDVERH 143

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G+   LP +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ H+    
Sbjct: 144 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198

Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221
           K+LR+K+  DP +     + R LGY ++
Sbjct: 199 KRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|170782486|ref|YP_001710819.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157055|emb|CAQ02228.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 236

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   ++L   IR  S   +I ++   +++  L  F  GVDD + KP    E++ARV A+ 
Sbjct: 74  GPSGIQLAERIRRWSDAGVIMLTARDAVEDRLRGFGHGVDDYIVKPFALAELVARVGAVL 133

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR     +  E G + V  D       GE   L   E ++L YL A+RG+ ++KTQ+ + 
Sbjct: 134 RRRGRLASVVEIGDLLVDPDAGLARRGGEPLELTSIEFQLLAYLAAHRGRTLSKTQLLTQ 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D A + N+VE HIS LRKK+    G   + + R LGY ++
Sbjct: 194 VWG-YDHA-DPNLVEVHISALRKKMEAH-GPRLLHTVRGLGYRVE 235


>gi|229592122|ref|YP_002874241.1| two-component system transcriptional regulatory protein PhoP
           [Pseudomonas fluorescens SBW25]
 gi|229363988|emb|CAY51531.1| two-component system, transcriptional regulatory protein PhoP,
           regulator of virulence determinants [Pseudomonas
           fluorescens SBW25]
          Length = 225

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++   +    D G  +E   + E   +       D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLLTRLTDSGHVVEAVANAEEALYQTGQFNHDLAIIDLGLPGMGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R  ++  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTQAKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARMNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLDEQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLEGPGGFKPIDTVRGLGY 218


>gi|240144071|ref|ZP_04742672.1| transcriptional regulatory protein CutR [Roseburia intestinalis
           L1-82]
 gi|257203944|gb|EEV02229.1| transcriptional regulatory protein CutR [Roseburia intestinalis
           L1-82]
          Length = 153

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 79/133 (59%), Gaps = 6/133 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149
            D+G +D + KP H +E+ AR+ ++ RR  V  +   E+G I+  +  R+   +G++  L
Sbjct: 18  LDAGANDYMEKPFHLQELEARIRSLTRRKFVQKDVCLESGGIKFDTVRREAYAKGKMISL 77

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGF 207
            R+E  ILEYL+ N G+ V++ ++   ++   D +V+     +  H+S LRKKL+ +LG+
Sbjct: 78  TRKENGILEYLLLNPGRPVSQEELMEHVW---DASVDSFSGAIRVHMSSLRKKLKAELGY 134

Query: 208 DPVDSKRFLGYSI 220
           DP+ +K   GY I
Sbjct: 135 DPILNKVGEGYKI 147


>gi|296168092|ref|ZP_06850158.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896899|gb|EFG76527.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 227

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 15/165 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121
           +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR      ++
Sbjct: 67  LRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEI 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+   E+GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   ++G  
Sbjct: 127 SDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-A 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221
           D   +   ++ H+    K+LR+K+  DP +     + R LGY ++
Sbjct: 186 DYVGDTKTLDVHV----KRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|300857169|ref|YP_003782153.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300437284|gb|ADK17051.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 17/196 (8%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY       G+ +LE F+S+EF   +      D+         +GE   E+ +IIR
Sbjct: 21  LEKEGYEVYTSTTGLKALELFDSIEFSLIILDLMLPDI---------QGE---EICKIIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             S V +  ++   +L+  ++  ++G D+ + KP   RE++ARV +++RRL  +N     
Sbjct: 69  DKSDVHIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLGANNISVLS 128

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G I+++ D R  +V+G+   L   E  IL  L  N+GK + + Q+   ++G+  E  
Sbjct: 129 LDNGNIQIYKDSRIIKVKGQEISLTPNEFDILYVLAINKGKVLTREQLIDRVFGMDFEGF 188

Query: 186 EENVVESHISKLRKKL 201
           +   V+ HI  +RKK+
Sbjct: 189 DR-TVDVHIKNIRKKI 203


>gi|317507256|ref|ZP_07965002.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254450|gb|EFV13774.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 228

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 27/223 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG +          E+ ++ A  D+  ++  L G G    ++ + +RA
Sbjct: 21  LRKEGFETVIAGDGPT-------ALTEFDRTGA--DIVLLDLMLPGMGGN--DVCKQLRA 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126
            S VP+I ++   S    +   + G DD V KP   RE+ AR+ A+ RR + + +     
Sbjct: 70  RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQEAESETSLD 129

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E GPI++  D     V G+   LP +E  +LEYLM NRG+ + + Q+   ++G  D 
Sbjct: 130 GALEAGPIKLDVDRHLVSVHGKQVTLPLKEFDLLEYLMRNRGRVLTRGQLIDRVWG-ADY 188

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
             +   ++ H+ +LR K+ +    DP   +R      LGY ++
Sbjct: 189 VGDTKTLDVHVKRLRSKIED----DPAKPERLVTVRGLGYKLE 227


>gi|170017835|ref|YP_001728754.1| response regulator [Leuconostoc citreum KM20]
 gi|169804692|gb|ACA83310.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            +LI+D A + D   G++  F D  V   G +  E+E   Q S  +    I   L+  GE
Sbjct: 7   ILLIEDDANLADNIVGFLQDFADVNVVTNGLDG-EYEG--QESPYD---LIICDLMLPGE 60

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LE+ + +R +  + P++ ++   SL   ++ F+ G DD + KP +  E+L RV A+ R
Sbjct: 61  NGLEVIKHLRDNDIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLR 120

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R  V   +N    G + +  + R  +V G+   L  +E  IL YL  N+   V + QIF 
Sbjct: 121 RAGVYSEDNMITVGDVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++G+ D     NVV  +++ LR+KL      D + + R +G+
Sbjct: 181 RVWGI-DSDTTINVVNIYLNNLRRKLEAVGQNDLIKTLRNIGF 222


>gi|229032673|ref|ZP_04188636.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
 gi|228728672|gb|EEL79685.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
          Length = 247

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR   +
Sbjct: 89  ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRR--AA 146

Query: 123 NNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              AET  I  F      S      V G    L  +E  I+  L+ NRGK ++++ + + 
Sbjct: 147 TKEAETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNK 206

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G ++   +  V+++HI  LRK    KLG   + + + +GY I+
Sbjct: 207 VWG-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 246


>gi|126737637|ref|ZP_01753367.1| DNA-binding response regulator CtrA [Roseobacter sp. SK209-2-6]
 gi|126721030|gb|EBA17734.1| DNA-binding response regulator CtrA [Roseobacter sp. SK209-2-6]
          Length = 239

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S        +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRMARI--ETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG I V  D +  EV+G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSIINTGKIAVNLDAKTVEVEGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            +YG  DE  E  +++  I KLRKKL    G D
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSTATGGD 208


>gi|170720384|ref|YP_001748072.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758387|gb|ACA71703.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 225

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++     E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGESGHVVQAVADAEEALYQAEQFHFDLAVIDLGL--PGMSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   +R  ++  P++ ++   + Q  ++   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELIGRLRTQAKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY
Sbjct: 181 -GDEERDPNVIEVLVGRLRRKLEGARGFKPIDTVRGLGY 218


>gi|291542560|emb|CBL15670.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 225

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 6/134 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149
            D+G +D + KP H  E+ AR+ ++ RR    NN     G +   +  R     G+   L
Sbjct: 91  LDAGANDYLTKPFHLEELEARIRSLTRRRFTQNNVVLNCGKVAFDTKARVAVADGQELSL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGF 207
            R+E  ILEYL+ N+G+ V++ ++   ++   D +V+   N +  HIS LRKKLR  LG+
Sbjct: 151 TRKEIGILEYLLLNQGRPVSQEELLDHVW---DNSVDNFSNSIRVHISALRKKLRAALGY 207

Query: 208 DPVDSKRFLGYSID 221
           DP+ ++   GY ++
Sbjct: 208 DPIRNRIGEGYVME 221


>gi|256822630|ref|YP_003146593.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256796169|gb|ACV26825.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 224

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 2/150 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           Q P++ ++     Q  +D   +G DD + KP    E+LAR+ A+ RR    +      GP
Sbjct: 72  QFPVLILTARGHWQDKVDGLAAGADDYLVKPFQTEELLARINALLRRASGYAKPEIVKGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I + S  ++ +V GEV  L   E ++LEYLM N  K V+KT++   +Y   D   + NV+
Sbjct: 132 ISLNSLKQEVKVNGEVMDLTAYEYKVLEYLMLNPDKVVSKTELTEHLYAQ-DYDRDSNVL 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E  + +LRKK+       P+D+ R  GY +
Sbjct: 191 EVFVGRLRKKIDPDGTIQPIDTLRGRGYRL 220


>gi|229164006|ref|ZP_04291943.1| Two-component response regulator vanRB [Bacillus cereus R309803]
 gi|228619389|gb|EEK76278.1| Two-component response regulator vanRB [Bacillus cereus R309803]
          Length = 216

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR   +
Sbjct: 58  ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRR--AA 115

Query: 123 NNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              AET  I  F      S      V G    L  +E  I+  L+ NRGK ++++ + + 
Sbjct: 116 TKEAETATILHFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNK 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G ++   +  V+++HI  LRK    KLG   + + + +GY I+
Sbjct: 176 VWG-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 215


>gi|116251199|ref|YP_767037.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255847|emb|CAK06928.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 223

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    S++    GP+R+ +      V G    L
Sbjct: 91  IDAGADDYVTKPFHVEEVLARIRALIRRAAGHSSSEIICGPVRLDTKSSKATVNGATLKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + +LRK    K+G D
Sbjct: 151 TSHEYRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY I
Sbjct: 205 LIETVRGLGYRI 216


>gi|148546459|ref|YP_001266561.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148510517|gb|ABQ77377.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|313497543|gb|ADR58909.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 225

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  +E     E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGL--PGISGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   +R+  +  P++ ++   + Q  ++   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +      L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFIQSTITAGPLVLDLNRKQATLDEHALALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL  + GF P+D+ R LGY
Sbjct: 181 -GDEERDPNVIEVLVGRLRRKLEGERGFKPIDTVRGLGY 218


>gi|209548520|ref|YP_002280437.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534276|gb|ACI54211.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 223

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    S++    GP+R+ +      V G    L
Sbjct: 91  IDAGADDYVTKPFHVEEVLARIRALIRRAAGHSSSEIICGPVRLDTKSSKATVNGTTLKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + +LRK    K+G D
Sbjct: 151 TSHEYRLLAYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY I
Sbjct: 205 LIETVRGLGYRI 216


>gi|149201723|ref|ZP_01878697.1| two-component response regulator [Roseovarius sp. TM1035]
 gi|149144771|gb|EDM32800.1| two-component response regulator [Roseovarius sp. TM1035]
          Length = 224

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 2/163 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE +  LP +   +  + +I +S    +   +   D G DD + KP    E+LAR+ A++
Sbjct: 57  GEGLSLLPSLRADNPGIHVIVLSARNGVNDRVAGLDGGADDYLTKPFSIDEMLARIRAVF 116

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR  K+++     G +       + EV G    LPRRE R+L  L+  RG+ V +  + +
Sbjct: 117 RRPAKLAHATIRAGSLVFDLAYEEVEVDGARIDLPRRELRVLAALIKRRGRTVQREALEN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           A++G FD+ ++ N ++SHIS+LR++L        + + R +GY
Sbjct: 177 AVFG-FDDEIQSNTLDSHISRLRRRLTTAGARIEIHAIRGVGY 218


>gi|929822|emb|CAA62008.1| FeuP [Rhizobium leguminosarum]
          Length = 223

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    S++    GP+R+ +      V G    L
Sbjct: 91  IDAGADDYVTKPFHVEEVLARIRALIRRAAGHSSSEIICGPVRLDTKSSKATVNGTTLKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + +LRK    K+G D
Sbjct: 151 TSHEYRLLAYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY I
Sbjct: 205 LIETVRGLGYRI 216


>gi|222148018|ref|YP_002548975.1| two component response regulator [Agrobacterium vitis S4]
 gi|221735006|gb|ACM35969.1| two component response regulator [Agrobacterium vitis S4]
          Length = 224

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    +++    GP+R+ +      V G+   L
Sbjct: 91  IDAGADDYVTKPFHVEEVLARIRALIRRAAGHASSEIACGPVRLDTKSSKVTVSGKALKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + +LRK    K+G D
Sbjct: 151 TSHEFRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KIGLD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY I
Sbjct: 205 MIETVRGLGYRI 216


>gi|190573625|ref|YP_001971470.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190011547|emb|CAQ45166.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 223

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 4/165 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G   + + R +R +  + +I ++   +L   ++  D G DD + KP+   E++AR+ A
Sbjct: 57  GDGAGFVAVARALRPN--LAVIMLTAKGTLSDKVEGLDVGADDYLVKPVAIEELMARIRA 114

Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR   +   R   G +    +    +V G++  LPRR+  +L+ L   +G+ V ++ +
Sbjct: 115 VSRRPSAMVTPRLRLGRLEFDFESLQAQVDGQLLALPRRQVLVLQALAMRQGRTVTRSAL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +A+YG FD+ ++ N +++HISKLRK L+       +   R +GY
Sbjct: 175 EAAVYG-FDDEIQSNALDAHISKLRKALQQAGAGVEIHVIRGVGY 218


>gi|325293887|ref|YP_004279751.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325061740|gb|ADY65431.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 224

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 2/168 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE +  +  + +A   VP++ ++   S+   +D  D+G DD + KP    E+LAR+ A++
Sbjct: 57  GEGLNLVSSLRKARHSVPILVLTALGSVDHRVDGLDAGADDYLAKPFAIEELLARLRALH 116

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   +S+     G + +     +  V G +    RRE   LE LM    + V ++ +  
Sbjct: 117 RRGPSLSSQYVSFGNLSIDPKSNEVTVAGAIIEFRRREYLALEALMRRPNRIVTRSNLVE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           A+Y L DE +E N +++HIS++RKKL        + + R +GY I  N
Sbjct: 177 AVYNLDDE-IESNALDAHISRIRKKLAQAEATVEIRAVRNIGYLIRAN 223


>gi|163736310|ref|ZP_02143729.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
 gi|163741161|ref|ZP_02148553.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis
           2.10]
 gi|161385514|gb|EDQ09891.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis
           2.10]
 gi|161390180|gb|EDQ14530.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
          Length = 239

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     +  +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRMARI--ETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG I V  D +  EV G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSIINTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            +YG  DE  E  +++  I KLRKKL    G D
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSTATGGD 208


>gi|167565398|ref|ZP_02358314.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis EO147]
 gi|167572502|ref|ZP_02365376.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis C6786]
          Length = 223

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 5/165 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   + GE  PL  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           GL DE+V  + +E ++ +LRKKL    G   V + R LGY ++  
Sbjct: 180 GL-DESVNADAIEIYVHRLRKKLEGS-GVAIV-TLRGLGYLLEAQ 221


>gi|215425719|ref|ZP_03423638.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           T92]
          Length = 210

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +    +   + A  D +  +  L+     G    ++ + +RA S VP+I ++   S
Sbjct: 7   EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 66

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138
               +   + G DD V KP   RE++AR+ A+ RR      ++S+   E+GP+R+  +  
Sbjct: 67  EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 126

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G+   LP +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ H+    
Sbjct: 127 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 181

Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221
           K+LR+K+  DP +     + R LGY ++
Sbjct: 182 KRLRSKIEADPANPVHLVTVRGLGYKLE 209


>gi|15839882|ref|NP_334919.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308231563|ref|ZP_07412927.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308370423|ref|ZP_07421449.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308371683|ref|ZP_07425819.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308372906|ref|ZP_07430350.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308374017|ref|ZP_07667694.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308379790|ref|ZP_07487588.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308395531|ref|ZP_07669341.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|13880018|gb|AAK44733.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308216807|gb|EFO76206.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308332020|gb|EFP20871.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308335807|gb|EFP24658.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308339412|gb|EFP28263.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308343288|gb|EFP32139.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308363617|gb|EFP52468.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308367307|gb|EFP56158.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|323721166|gb|EGB30228.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CDC1551A]
          Length = 230

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +    +   + A  D +  +  L+     G    ++ + +RA S VP+I ++   S
Sbjct: 27  EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 86

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138
               +   + G DD V KP   RE++AR+ A+ RR      ++S+   E+GP+R+  +  
Sbjct: 87  EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 146

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G+   LP +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ H+    
Sbjct: 147 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 201

Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221
           K+LR+K+  DP +     + R LGY ++
Sbjct: 202 KRLRSKIEADPANPVHLVTVRGLGYKLE 229


>gi|139438103|ref|ZP_01771656.1| Hypothetical protein COLAER_00644 [Collinsella aerofaciens ATCC
           25986]
 gi|133776300|gb|EBA40120.1| Hypothetical protein COLAER_00644 [Collinsella aerofaciens ATCC
           25986]
          Length = 230

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 6/134 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G +D + KP H  E+ AR+ ++  RR   S+       +R  +  R   V  E   L
Sbjct: 97  LDAGANDYLTKPFHLDELAARIRSLTLRRFTQSDVVLTCRKLRFDTKARIASVDSETLSL 156

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGF 207
            R+E  ILEYLM N+G+ V++ ++   ++   D +V    N    HIS LRKKLR  LG+
Sbjct: 157 TRKETGILEYLMLNQGRPVSQEELIEHVW---DSSVNSFSNATRVHISSLRKKLRIALGY 213

Query: 208 DPVDSKRFLGYSID 221
           DP+ ++   GY ++
Sbjct: 214 DPIRNRIGEGYVME 227


>gi|229829576|ref|ZP_04455645.1| hypothetical protein GCWU000342_01673 [Shuttleworthia satelles DSM
           14600]
 gi|229791565|gb|EEP27679.1| hypothetical protein GCWU000342_01673 [Shuttleworthia satelles DSM
           14600]
          Length = 235

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 48  AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107
           AI   ++ K +    L +I  A + +P++ ++    +   +   DSG DD + KP   RE
Sbjct: 59  AILDVMMPKMDGFTVLRKIRSAQNDIPVLMLTARSEIDDRVQGLDSGADDYLTKPFSTRE 118

Query: 108 ILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           ++ARV +I RR  V+ + +   G + +          G    L  +E +ILE L+AN G+
Sbjct: 119 LIARVRSITRRRTVATDASMHLGRLTLDQLTCTANAPGGSLHLANKEYQILEMLLANPGQ 178

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++  Q    I+G F+  VE+NVV  +IS LR+KL++      + + R LGY
Sbjct: 179 IISPDQFMEKIWG-FESDVEQNVVWVNISNLRRKLKSIDAGIVIKASRGLGY 229


>gi|291523336|emb|CBK81629.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 246

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +R  ++   ++ +S    +   ++  DSG +D + KP H +E+ ARV ++ RR 
Sbjct: 80  MEILRELRKENEETKVLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSLTRRK 139

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V  N   E G +R  +  R    +     L R+E  ILEYL+ N+G+ V++ ++   ++
Sbjct: 140 FVQKNICLECGKLRFDTRERVAYAEDNPVALTRKENGILEYLLLNQGRPVSQEELIEHVW 199

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D +V+     +  H+S LRKKL+  LG+DP+ +K   GY I
Sbjct: 200 ---DSSVDSFSGSIRVHMSSLRKKLKAGLGYDPIVNKIGEGYKI 240


>gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
           Mycobacterium Tuberculosis
          Length = 230

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +    +   + A  D +  +  L+     G    ++ + +RA S VP+I ++   S
Sbjct: 27  EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 86

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138
               +   + G DD V KP   RE++AR+ A+ RR      ++S+   E+GP+R+  +  
Sbjct: 87  EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 146

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G+   LP +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ H+    
Sbjct: 147 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 201

Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221
           K+LR+K+  DP +     + R LGY ++
Sbjct: 202 KRLRSKIEADPANPVHLVTVRGLGYKLE 229


>gi|121636407|ref|YP_976630.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|2190436|emb|CAA73956.1| RegX3 [Mycobacterium bovis BCG]
 gi|121492054|emb|CAL70517.1| Two component sensory transduction protein regX3 (probably
           luxR-family) [Mycobacterium bovis BCG str. Pasteur
           1173P2]
          Length = 227

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +    +   + A  D +  +  L+     G    ++ + +RA S VP+I ++   S
Sbjct: 24  EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138
               +   + G DD V KP   RE++AR+ A+ RR      ++S+   E+GP+R+  +  
Sbjct: 84  EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 143

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G+   LP +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ H+    
Sbjct: 144 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198

Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221
           K+LR+K+  DP +     + R LGY ++
Sbjct: 199 KRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|78062614|ref|YP_372522.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77970499|gb|ABB11878.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 226

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   + GE   L  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GIAIV-TLRGLGYLLE 219


>gi|77360226|ref|YP_339801.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875137|emb|CAI86358.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 224

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 81/149 (54%), Gaps = 2/149 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++     Q  ++  D+G DD + KP H  E++AR  A+ RR    +N     GPI
Sbjct: 73  IPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSAGKANPEMTAGPI 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           ++ +  +   V  +   L   E ++LEYLM N  K ++K+++   IY   D  ++ NV+E
Sbjct: 133 KIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYDQ-DFDLDSNVIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + +LRKKL  +   +PV++ R  GY +
Sbjct: 192 VFVLRLRKKLDPEGVLNPVETLRGRGYRL 220


>gi|320526762|ref|ZP_08027952.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320132730|gb|EFW25270.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 226

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 88/161 (54%), Gaps = 6/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I +  S+  ++ +S    LQ  +D  DSG +D + KP H  E+ ARV ++ RR  V 
Sbjct: 63  LHNIRKEDSETAVLILSARGHLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRRTVQ 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           NN     G + + +  R    +GE  PL R+E  +LEYL+ ++ + V + ++   ++   
Sbjct: 123 NNVILSCGELSLDTKSRTAMARGEKLPLTRKELGLLEYLLLHQERPVPQEELIQHVW--- 179

Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D +V+   N +  HIS LRKKLR  LG+DP+ ++   GY I
Sbjct: 180 DSSVDSFSNSIRVHISALRKKLRAALGYDPIANRIGQGYVI 220


>gi|15607632|ref|NP_215005.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Rv]
 gi|31791671|ref|NP_854164.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis AF2122/97]
 gi|148660258|ref|YP_001281781.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148821690|ref|YP_001286444.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|215402254|ref|ZP_03414435.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|215410013|ref|ZP_03418821.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215444596|ref|ZP_03431348.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|218752126|ref|ZP_03530922.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis GM 1503]
 gi|219556316|ref|ZP_03535392.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T17]
 gi|253797420|ref|YP_003030421.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363455|ref|ZP_04979501.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549440|ref|ZP_05139887.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185360|ref|ZP_05762834.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199491|ref|ZP_05766982.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|260203644|ref|ZP_05771135.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289441874|ref|ZP_06431618.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289446035|ref|ZP_06435779.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289552742|ref|ZP_06441952.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289568414|ref|ZP_06448641.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289573078|ref|ZP_06453305.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289744198|ref|ZP_06503576.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289756566|ref|ZP_06515944.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|289760610|ref|ZP_06519988.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|294995998|ref|ZP_06801689.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis 210]
 gi|297632977|ref|ZP_06950757.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
 gi|297729952|ref|ZP_06959070.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN R506]
 gi|298523970|ref|ZP_07011379.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306779340|ref|ZP_07417677.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|306802091|ref|ZP_07438759.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|306806302|ref|ZP_07442970.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|306966500|ref|ZP_07479161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|306970694|ref|ZP_07483355.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|313657281|ref|ZP_07814161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN V2475]
 gi|1731207|sp|Q11156|REGX3_MYCTU RecName: Full=Sensory transduction protein regX3
 gi|38605703|sp|O07130|REGX3_MYCBO RecName: Full=Sensory transduction protein regX3
 gi|1449289|emb|CAB00952.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium tuberculosis H37Rv]
 gi|2190480|emb|CAA73958.1| RegX3 [Mycobacterium tuberculosis]
 gi|31617257|emb|CAD93364.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium bovis AF2122/97]
 gi|134148969|gb|EBA41014.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504410|gb|ABQ72219.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148720217|gb|ABR04842.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|253318923|gb|ACT23526.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414793|gb|EFD12033.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289418993|gb|EFD16194.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437374|gb|EFD19867.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289537509|gb|EFD42087.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289542168|gb|EFD45816.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289684726|gb|EFD52214.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289708116|gb|EFD72132.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|289712130|gb|EFD76142.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|298493764|gb|EFI29058.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308327670|gb|EFP16521.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|308347183|gb|EFP36034.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|308351125|gb|EFP39976.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|308355755|gb|EFP44606.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|308359814|gb|EFP48665.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|326902318|gb|EGE49251.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis W-148]
 gi|328457206|gb|AEB02629.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
          Length = 227

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +    +   + A  D +  +  L+     G    ++ + +RA S VP+I ++   S
Sbjct: 24  EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138
               +   + G DD V KP   RE++AR+ A+ RR      ++S+   E+GP+R+  +  
Sbjct: 84  EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 143

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G+   LP +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ H+    
Sbjct: 144 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198

Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221
           K+LR+K+  DP +     + R LGY ++
Sbjct: 199 KRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|114797249|ref|YP_759671.1| DNA-binding response regulator CtrA [Hyphomonas neptunium ATCC
           15444]
 gi|114737423|gb|ABI75548.1| DNA-binding response regulator CtrA [Hyphomonas neptunium ATCC
           15444]
          Length = 237

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 32/216 (14%)

Query: 6   DDRALVK-----------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI 54
           DDRAL +           + Y+   G+DGV +      EF+  L   +  D++  E    
Sbjct: 8   DDRALARSIELMLKAAGFNVYLTDLGEDGVDIG--KVYEFDMILLDLSLPDITGFEVL-- 63

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
               K L + R+       P++ +S  P ++  +     G DD + KP +  E++AR+ A
Sbjct: 64  ----KQLRMSRV-----NTPVMILSGNPDIEAKVKTLGYGADDYLTKPFNKDELIARITA 114

Query: 115 IYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           I RR   S   AE    TG I V  D +  EV GE   L  +E  + E L   +G  + K
Sbjct: 115 IVRR---SKGHAESVIRTGDILVNLDAKTVEVDGERVHLTGKEYAMFELLSLRKGTTLTK 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
               + +YG  DE  E  +++  I KLRKKL+   G
Sbjct: 172 EMFLNHLYGGLDEP-ELKIIDVFICKLRKKLQQATG 206


>gi|296111541|ref|YP_003621923.1| two-component system regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295833073|gb|ADG40954.1| two-component system regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            +LI+D   + D   G++  F D  V   G +  EFE   Q S  +    I + L+  GE
Sbjct: 7   ILLIEDDVNLADNIVGFLQDFADVNVVDNGLDG-EFEG--QESPYD---LIISDLMLPGE 60

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              E+ + +R +  + P++ ++   SL   ++ F+ G DD + KP +  E+L RV A+ R
Sbjct: 61  NGFEVIKYLRKNDIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLR 120

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R  V   +N    G + +  + R  +V G+   L  +E  IL YL  N+   V + QIF 
Sbjct: 121 RAGVYSEDNMIAVGDVMINLENRGVQVHGQQVKLVGKEFDILTYLAQNKNIIVTRDQIFD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++G+ D     NVV  +++ LR+KL      D + + R +G+ ++ N
Sbjct: 181 RVWGI-DSDTTINVVNIYLNNLRRKLEAVGQNDLIKTLRNIGFILEVN 227


>gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
          Length = 230

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 6/168 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +R  ++   VP+I ++        +   D+G DD V KP    E+ ARV A+ R
Sbjct: 62  IEVCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++  ++++R   G I +       +  G+   L   E R+L+YLM + G+  ++ Q+  
Sbjct: 122 RIRPGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           A++G  D  VE   V+ HI +LRK+L      DP+ + R  GYS+D +
Sbjct: 182 AVWG-SDVYVEARTVDVHIGRLRKELNGTTDADPIRTVRSAGYSLDMD 228


>gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 223

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    S++    GP+R+ +      V G+   L
Sbjct: 91  IDAGADDYVAKPFHVEEVLARIRALIRRAAGHSSSEIICGPVRLDTKSSKASVDGKPLKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM ++G+ V++T++   +Y   FD   + N +E  + +LRK    K+G D
Sbjct: 151 TSHEYRLLAYLMHHKGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY I
Sbjct: 205 LIETVRGLGYRI 216


>gi|241203804|ref|YP_002974900.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857694|gb|ACS55361.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 223

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    S++    GP+R+ +      V G    L
Sbjct: 91  IDAGADDYVTKPFHVEEVLARLRALIRRAAGHSSSEIICGPVRLDTKSSKATVNGTTLKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + +LRK    K+G D
Sbjct: 151 TSHEYRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY I
Sbjct: 205 LIETVRGLGYRI 216


>gi|190890997|ref|YP_001977539.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696276|gb|ACE90361.1| two-component response regulator protein [Rhizobium etli CIAT 652]
          Length = 223

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 8/154 (5%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127
           A   VP++ ++        +   D+G DD V KP H  E+LAR+ A+ RR    +++   
Sbjct: 69  AGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAAGHASSEIV 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y   FD   +
Sbjct: 129 CGPVRLDTKSSKATVNGTALKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--D 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N +E  + +LRK    K+G D +++ R LGY I
Sbjct: 187 SNTIEVFVGRLRK----KMGVDLIETVRGLGYRI 216


>gi|300868620|ref|ZP_07113234.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300333379|emb|CBN58426.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 225

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 16/214 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGK-GEKVLELPRI 66
            L + G++  + D+G           E +L++   E DV  ++  L GK G  +L+  R 
Sbjct: 19  GLKEQGFVVDYCDNG----------DEGYLRAMDNEYDVLVLDIMLPGKDGLAILKSLR- 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNR 125
            R+   VP+I ++    L   L+  + G DD + KP    E++AR+ A+ RR+     N 
Sbjct: 68  -RSGRNVPVILLTARNELDDRLEGLNLGADDYLAKPFFVEELIARIHAVIRRVSGERQNI 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              GP+++    R      +   L  RE  +LEYLM + G+ + +TQI   ++G +D   
Sbjct: 127 LSLGPLKLDRITRQVTCNQQSVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG-YDFNP 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             N+V+  I ++RKKL    G   ++S R +GY 
Sbjct: 186 TTNLVDVCIQRIRKKLERMGGASCIESVRGVGYC 219


>gi|170698062|ref|ZP_02889143.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170137023|gb|EDT05270.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 225

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A +    + L   +  +++     E  + +  + R D   ++  L G  G++V
Sbjct: 3   LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R+ R +  VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR  
Sbjct: 63  L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+  +   G +      R+      V  L RRE  ILE LM  + K V+K ++  +++ 
Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L DE    + ++ +I +LRK L   L    + + R LGY
Sbjct: 181 LDDEP-SADAIDIYIHRLRKHL--ALSTAEIITLRGLGY 216


>gi|170742557|ref|YP_001771212.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196831|gb|ACA18778.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 227

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 8/156 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           RA  + P+I ++        ++ FD+G DD V KP H  E+LARV AI RR    ++++ 
Sbjct: 68  RAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAAGHASSQI 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y   FD   
Sbjct: 128 SAGPVTLDTRSGRVFVNGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYDQDFDR-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + N +E  + +LRK    KL  D + + R LGY ID
Sbjct: 186 DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLID 217


>gi|119469337|ref|ZP_01612276.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonadales bacterium TW-7]
 gi|119447201|gb|EAW28470.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonadales bacterium TW-7]
          Length = 224

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +EL    RA    +P++ ++     Q  ++  D+G DD + KP H  E+ AR  A+ RR 
Sbjct: 60  IELINKARAQGVTIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELAARCNALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +N     GPI++ +  +   V  +   L   E ++LEYLM N  K ++K+++   IY
Sbjct: 120 AGKANPEMTAGPIKIHTRSQQVWVDDKELTLTAYEYKVLEYLMVNPQKVISKSELTEHIY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D  ++ NV+E  + +LRKKL  +   +PV++ R  GY +
Sbjct: 180 DQ-DFDLDSNVIEVFVLRLRKKLDPEGTLNPVETLRGRGYRL 220


>gi|315126788|ref|YP_004068791.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas sp. SM9913]
 gi|315015302|gb|ADT68640.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas sp. SM9913]
          Length = 224

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 2/149 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++     Q  ++  D+G DD + KP H  E++AR  A+ RR    +N     GPI
Sbjct: 73  IPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSAGKANPEMTAGPI 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           ++ +  +   V  +   L   E ++LEYLM N  K ++K+++   IY   D  ++ NV+E
Sbjct: 133 KIHTRSQQVWVNDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYDQ-DFDLDSNVIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + +LRKKL      +PV++ R  GY +
Sbjct: 192 VFVLRLRKKLDPDGVLNPVETLRGRGYRL 220


>gi|289748982|ref|ZP_06508360.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T92]
 gi|289689569|gb|EFD56998.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T92]
          Length = 198

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 15/165 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121
           +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR      ++
Sbjct: 38  LRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEM 97

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+   E+GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   ++G  
Sbjct: 98  SDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-A 156

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221
           D   +   ++ H+    K+LR+K+  DP +     + R LGY ++
Sbjct: 157 DYVGDTKTLDVHV----KRLRSKIEADPANPVHLVTVRGLGYKLE 197


>gi|170702017|ref|ZP_02892936.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170133079|gb|EDT01488.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 224

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   + GE   L  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219


>gi|300172681|ref|YP_003771846.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887059|emb|CBL91027.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            +LI+D   + D   G++  F D  V   G +  EFE   Q S  +    I + L+  GE
Sbjct: 7   ILLIEDDVNLADNIVGFLEDFADVNVVNNGLDG-EFEG--QESPYD---LIISDLMLPGE 60

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              E+ + +R +  + P++ ++   SL   ++ F+ G DD + KP +  E+L RV A+ R
Sbjct: 61  NGFEVIKYLRKNGIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLR 120

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R  V   +N    G + +  + R  +V G+   L  +E  IL YL  N+   V + QIF 
Sbjct: 121 RAGVYSEDNMIAVGDVLINLENRGVQVHGQQIKLVGKEFDILTYLAQNKNIIVTRDQIFD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++G+ D     NVV  +++ LR+KL +    D + + R +G+
Sbjct: 181 RVWGI-DSDTTINVVNIYLNNLRRKLESVGQNDLIKTLRNIGF 222


>gi|27379913|ref|NP_771442.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27353066|dbj|BAC50067.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 224

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 2/163 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  +P++      VP+I ++    L   +   DSG DD + KP    E+LAR+ A+ 
Sbjct: 57  GDGLALIPKLRARADGVPIIVLTARGELADRIAGLDSGADDYLAKPFAVEELLARLRAVM 116

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   ++ +    G +      R+  + G+ F LPRRE  +LE L+   G+ V ++ +  
Sbjct: 117 RRPAGLTPDVIRAGRLAFDVGHREASIDGQPFELPRRELLVLEALIRRIGRTVIRSALEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           A+Y  FD+ ++ N +++HIS+LR+KL        +   R +GY
Sbjct: 177 AVYN-FDDEIQSNALDTHISRLRRKLAEADAGIEIHGIRGVGY 218


>gi|261250867|ref|ZP_05943441.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
 gi|260937740|gb|EEX93728.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
          Length = 218

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 14/195 (7%)

Query: 36  EWL-QSSAREDVSAIEAFLI-------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87
           +WL + S  + V ++E F +         G+ +  L  + +A   +P+I +S   S +  
Sbjct: 28  DWLTEGSGVKQVLSLETFTLIILDLSLPDGDGITLLKSLRQAKYDLPIIILSARDSNKDI 87

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEV 146
           +   DSG D+ + KP    E+LAR+  I RR   S+    T G   +  +    +   EV
Sbjct: 88  ILGLDSGADEYIGKPFSFEELLARIRVIVRRQSSSSTHIITKGNFELNLNDYIVKYNDEV 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L + E +IL YL++N    V+K Q+   I G + E   EN VE HI  LRKKL N + 
Sbjct: 148 LKLTKNEFKILSYLVSNNSLVVSKPQLLQIING-WSETSTENSVEVHIHNLRKKLPNNV- 205

Query: 207 FDPVDSKRFLGYSID 221
              + + R +GY+I+
Sbjct: 206 ---IKTIRGIGYTIE 217


>gi|313114775|ref|ZP_07800276.1| putative subtilin biosynthesis regulatory protein SpaR
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622905|gb|EFQ06359.1| putative subtilin biosynthesis regulatory protein SpaR
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 226

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 2/147 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE    + R IR+ ++VP++ +S        L+    G DD ++KP    E+ ARVAA  
Sbjct: 56  GEDGFAVCRRIRSLTEVPILFLSARTDEAAVLEGLGIGADDFLSKPFRVAELRARVAAHL 115

Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR  +   +R     +      R   V+G V PL R E  I EYL  + G+   K QI+ 
Sbjct: 116 RRQSRTPAHRMVRSGVAFDLTARSAAVEGTVLPLTRSEYAICEYLALHAGQTFTKEQIYE 175

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR 202
           A++G+ D   ++  V  HI  +R KLR
Sbjct: 176 AVFGI-DGTADDTAVTQHIKNIRAKLR 201


>gi|107026470|ref|YP_623981.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116692342|ref|YP_837875.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|254248532|ref|ZP_04941852.1| DNA-binding response regulator [Burkholderia cenocepacia PC184]
 gi|105895844|gb|ABF79008.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116650342|gb|ABK10982.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|124875033|gb|EAY65023.1| DNA-binding response regulator [Burkholderia cenocepacia PC184]
          Length = 224

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   + GE   L  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKDTLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219


>gi|221196554|ref|ZP_03569601.1| DNA-binding response regulator TctD [Burkholderia multivorans
           CGD2M]
 gi|221203223|ref|ZP_03576242.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2]
 gi|221177157|gb|EEE09585.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2]
 gi|221183108|gb|EEE15508.1| DNA-binding response regulator TctD [Burkholderia multivorans
           CGD2M]
          Length = 224

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   +  E  PL  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRVECGPLAYDSVDRSFRLADEPLPLTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENS-GVAIV-TLRGLGYLLE 219


>gi|187478610|ref|YP_786634.1| two-component response regulator [Bordetella avium 197N]
 gi|115423196|emb|CAJ49727.1| two-component response regulator [Bordetella avium 197N]
          Length = 223

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  LE+ R +R   +QVP++ ++    L   +   D+G DD V KP    E+ ARV A+
Sbjct: 56  GQSGLEVLRQLRQEGNQVPVLILTARDGLDDRVAGLDAGADDYVTKPFDLPELAARVRAL 115

Query: 116 -YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             RR   +    E GP+   + GR+  V G+   L  RE  +LE LMA  G+ + K QI 
Sbjct: 116 GRRRTGQAQPLIEVGPLVFDTVGREVRVNGQRLSLSVRELSVLEMLMARVGRVITKRQIV 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +++   +D    EN VE ++ +LRK+L        + + R  GY +D
Sbjct: 176 NSLSA-WDADFSENAVEVYVYRLRKRLEGTGA--SIQTVRGFGYMLD 219


>gi|332533632|ref|ZP_08409492.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036913|gb|EGI73373.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 224

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 2/149 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++     Q  ++  D+G DD + KP H  E++AR  A+ RR    +N     GPI
Sbjct: 73  IPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSAGKANPEMTAGPI 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           ++ +  +   V  +   L   E ++LEYLM N  K ++K+++   IY   D  ++ NV+E
Sbjct: 133 KIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYDQ-DFDLDSNVIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + +LRKKL      +PV++ R  GY +
Sbjct: 192 VFVLRLRKKLDPDGVLNPVETLRGRGYRL 220


>gi|316935037|ref|YP_004110019.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602751|gb|ADU45286.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 224

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 6/155 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
             P+I ++    L   +   DSG DD + KP    E++AR+ A+ RR   +S    + G 
Sbjct: 72  MTPIIVLTARGDLAQRVAGLDSGADDYLGKPFAIAELMARLRAVLRRPSDLSEEILKLG- 130

Query: 131 IRVFSDG--RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
            R+  DG  R   V G    LPRRE  +LE L+   G+ VA+  +  A+YG F++ ++ N
Sbjct: 131 -RLCFDGAHRQASVAGVDLNLPRRELLVLEALLRRSGRTVARDALVHAVYG-FEDEIQSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +++HIS+LR+KL +      + + R +GY I+ +
Sbjct: 189 ALDTHISRLRRKLIDADAGVEIHTIRGIGYLINRS 223


>gi|206563234|ref|YP_002233997.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198039274|emb|CAR55239.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 226

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   + GE   L  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKDTLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219


>gi|220924050|ref|YP_002499352.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219948657|gb|ACL59049.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 225

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 8/156 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           RA  + P+I ++        ++ FD+G DD V KP H  E+LARV AI RR    ++++ 
Sbjct: 68  RAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAAGHASSQI 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y   FD   
Sbjct: 128 SAGPVTLDTRSGRVFVDGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYDQDFDR-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + N +E  + +LRK    KL  D + + R LGY ID
Sbjct: 186 DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLID 217


>gi|160943686|ref|ZP_02090918.1| hypothetical protein FAEPRAM212_01181 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445141|gb|EDP22144.1| hypothetical protein FAEPRAM212_01181 [Faecalibacterium prausnitzii
           M21/2]
          Length = 220

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 2/147 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE    + R IR+ ++VP++ +S        L+    G DD ++KP    E+ ARVAA  
Sbjct: 50  GEDGFAVCRRIRSLTEVPILFLSARTDEAAVLEGLGIGADDFLSKPFRVAELRARVAAHL 109

Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR  +   +R     +      R   V+G V PL R E  I EYL  + G+   K QI+ 
Sbjct: 110 RRQSRTPAHRMVRSGVAFDLTARSAAVEGTVLPLTRSEYAICEYLALHAGQTFTKEQIYE 169

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR 202
           A++G+ D   ++  V  HI  +R KLR
Sbjct: 170 AVFGI-DGTADDTAVTQHIKNIRAKLR 195


>gi|170735656|ref|YP_001776916.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817844|gb|ACA92426.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 224

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   + GE   L  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKDTLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219


>gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
 gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
          Length = 230

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 6/168 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +R  ++   VP+I ++        +   D+G DD V KP    E+ ARV A+ R
Sbjct: 62  IEVCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++  ++++R   G I +       +  G+   L   E R+L+YLM + G+  ++ Q+  
Sbjct: 122 RIRPGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           A++G  D  VE   V+ HI +LRK L      DP+ + R  GYS+D +
Sbjct: 182 AVWG-SDVYVEARTVDVHIGRLRKALNGTTDADPIRTVRSAGYSLDMD 228


>gi|295108877|emb|CBL22830.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 225

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 6/153 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-E 127
           + S  P++ +S    +Q  ++  D G +D + KP H  E+ AR+ ++ RR  +  +   +
Sbjct: 69  SDSTTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKFIQEDICLK 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G I   +  R   V      L R+E  +LEY + ++G+ ++  ++   I  L+D +V  
Sbjct: 129 CGRIIFDTRTRKASVDDATLSLTRKESALLEYFLLHQGRIISPEEM---IEHLWDGSVNS 185

Query: 188 --NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             N +  HIS LRKKLR  LGFDP+ +K   GY
Sbjct: 186 FSNSIRVHISSLRKKLRAALGFDPIQNKIGQGY 218


>gi|171318586|ref|ZP_02907735.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171096240|gb|EDT41149.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 224

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   + GE   L  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRVECGPLSYDSIDRGFHLAGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219


>gi|172063171|ref|YP_001810822.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995688|gb|ACB66606.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 224

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   + GE   L  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLGGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219


>gi|332184568|gb|AEE26822.1| response regulator in two-component regulatory system with PhoQ
           [Francisella cf. novicida 3523]
          Length = 229

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L +I+R  +   P+I +S   S +  +    SG DD + KP    E++ RV  +Y+R 
Sbjct: 64  ISLLKILRKQNVNTPIIILSALDSTENKIQGLKSGSDDYLTKPFSIDELMIRVNILYKRT 123

Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           K       +R   G I +     +    G++  L +RE ++L  L+ ++ + V+KT I  
Sbjct: 124 KQITEAQTHRLSCGDIVLDELAHEVRRNGDLILLQQREYKVLHLLLKHKNEVVSKTMILK 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 184 EVWD-YDFDPQTNVVEVHISRLRNKLTEGGLIDPIKTIRGFGYVI 227


>gi|332716515|ref|YP_004443981.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325063200|gb|ADY66890.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 244

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 2/146 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIR 132
           P+I ++   +L   ++  + G DD + KP    E+LAR+ A+ RR   S    A+ G + 
Sbjct: 94  PVIVLTAQGTLADRVNGLNLGADDYLAKPFAVEELLARIRALMRRPAGSVTMTAKLGKLE 153

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
              + R+  ++GE   L RRE  ILE L+  +G+ V ++ +  A+Y  FD+ ++ N ++S
Sbjct: 154 FCFETREVRIKGEFIALTRRELLILEALLRRQGRTVLRSVLEEAVYN-FDDEIQSNALDS 212

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218
           HIS+LR+KL+       V   R +GY
Sbjct: 213 HISRLRRKLQAADAGLEVHGIRGVGY 238


>gi|163814718|ref|ZP_02206107.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
 gi|158450353|gb|EDP27348.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
          Length = 225

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 4/163 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRR- 118
           LE+ R IR  S VP+I ++   ++   +   D+G DD + KP    E+LAR+  A+ RR 
Sbjct: 62  LEVLRRIRKESVVPVIMLTARDAVMDKVSGLDAGADDYLTKPFAIEELLARIRVALKRRG 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++V  +R E   + + +D  +  V GE   L  RE  +L  LM N+   + + ++ SA+
Sbjct: 122 TVEVHTHRIEIRGVCMDTDRHEVTVDGESVELTNREFELLRTLMENKDIVMDREKLLSAV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E N+++ ++  LR K+ ++ G   + + R +GY I
Sbjct: 182 CG-YDYLGETNIIDVYVRYLRTKIDDRFGVKLITTVRGVGYVI 223


>gi|172059097|ref|YP_001806749.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171991614|gb|ACB62533.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 225

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A +    + L   +  +++     E  + +  + R D   ++  L G  G++V
Sbjct: 3   LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R+ R +  VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR  
Sbjct: 63  L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+  +   G +      R+      V  L RRE  ILE LM  + K V+K ++  +++ 
Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCGDAVLALRRREHVILETLMLQQNKTVSKARLMDSVFA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L DE    + ++ +I +LRK L   L    + + R LGY
Sbjct: 181 LDDEP-SADAIDIYIHRLRKHL--ALSTAEIITLRGLGY 216


>gi|115358419|ref|YP_775557.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115283707|gb|ABI89223.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 224

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R   + GE   L  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLGGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219


>gi|218508476|ref|ZP_03506354.1| two-component response regulator protein [Rhizobium etli Brasil 5]
          Length = 199

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    +++    GP+R+ +      V G    L
Sbjct: 67  IDAGADDYVTKPFHVEEVLARIRALIRRAAGHASSEIVCGPVRLDTKSSKATVNGTALKL 126

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + +LRK    K+G D
Sbjct: 127 TSHEYRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 180

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY I
Sbjct: 181 LIETVRGLGYRI 192


>gi|115525450|ref|YP_782361.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115519397|gb|ABJ07381.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 224

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 6/153 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
             P+I ++    L   +   DSG DD + KP    E+LAR+ A+ RR   +S    + G 
Sbjct: 72  MTPIIVLTARGDLAERVAGLDSGADDYLGKPFAIAELLARLRAVLRRPSDLSEEILKLG- 130

Query: 131 IRVFSDG--RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
            R+  DG  R   V G    LPRRE  +LE L+    + VA+  +  A+YG FD+ ++ N
Sbjct: 131 -RLCFDGAHRQASVAGVNLNLPRRELLVLEALLRRSSRTVARVALDQAVYG-FDDEIQSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++HIS+LR+KL +      + + R +GY I+
Sbjct: 189 ALDTHISRLRRKLIDADAGVEIHTIRGIGYLIN 221


>gi|227821352|ref|YP_002825322.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227340351|gb|ACP24569.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
          Length = 223

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H +E+LAR+ A+ RR    +++    GP+R+ + G    V G    L
Sbjct: 91  IDAGADDYVAKPFHVQEVLARIRALIRRAAGHASSEIVCGPVRLDTKGSKATVGGVALKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  I +LRKK+ N L   
Sbjct: 151 TSHEFRLLSYLMHHMGQVVSRTELVEHMYDQDFDR--DSNTIEVFIGRLRKKIGNDL--- 205

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY +
Sbjct: 206 -IETVRGLGYRM 216


>gi|86356926|ref|YP_468818.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281028|gb|ABC90091.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 223

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    +++    GP+R+ +      V G    L
Sbjct: 91  IDAGADDYVTKPFHVEEVLARIRALIRRAAGHASSEIICGPVRLDTKSSKATVNGAALKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + +LRK    K+G D
Sbjct: 151 TSHEYRLLAYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY I
Sbjct: 205 LIETVRGLGYRI 216


>gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 223

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    +++    GP+R+ + G    V G    L
Sbjct: 91  IDAGADDYVAKPFHVEEVLARIRALIRRAAGHASSEIVCGPVRLDTKGSKATVAGVALKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  I +LRKK+ N L   
Sbjct: 151 TSHEFRLLSYLMHHMGQVVSRTELVEHMYDQDFDR--DSNTIEVFIGRLRKKIGNDL--- 205

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY +
Sbjct: 206 -IETVRGLGYRM 216


>gi|254504173|ref|ZP_05116324.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222440244|gb|EEE46923.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 220

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 105/203 (51%), Gaps = 10/203 (4%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIGISDY 81
           G++ +   +LE    L    R DV  ++  L  G G  +L+  R+     + P++ ++  
Sbjct: 21  GIACDLAKTLEEARSLLDVQRYDVIVLDLNLPDGLGTDLLKELRL--KSDRTPVLVLTAE 78

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIRVFSDGR 138
            S+   +   +SG DD + KP  HRE+ AR+ A+YRR +   ++AE    G +   +  R
Sbjct: 79  FSVDDRVSTLNSGADDYLVKPFDHRELEARIQALYRREQ--GDKAEELAIGDLTFNATAR 136

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              ++     L RRE  +LE  + NRGK ++K ++F  I+   D  V  N +E ++++LR
Sbjct: 137 VVRLKETPVNLTRREFSLLELFIRNRGKVLSKERLFEGIFSFQDTDVSMNALELYVARLR 196

Query: 199 KKLRNKLGFDPVDSKRFLGYSID 221
           KKL        ++++R LGY ++
Sbjct: 197 KKLSGSSVV--IETQRGLGYKLE 217


>gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021]
 gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Sinorhizobium meliloti
           1021]
 gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 223

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    +++    GP+R+ + G    V G    L
Sbjct: 91  IDAGADDYVAKPFHVEEVLARIRALIRRAAGHASSEIVCGPVRLDTKGSKATVAGVALKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  I +LRKK+ N L   
Sbjct: 151 TSHEFRLLSYLMHHMGQVVSRTELVEHMYDQDFDR--DSNTIEVFIGRLRKKIGNDL--- 205

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY +
Sbjct: 206 -IETVRGLGYRM 216


>gi|257439219|ref|ZP_05614974.1| transcriptional regulatory protein CutR [Faecalibacterium
           prausnitzii A2-165]
 gi|257198352|gb|EEU96636.1| transcriptional regulatory protein CutR [Faecalibacterium
           prausnitzii A2-165]
          Length = 225

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G +D + KP H  E+ AR+ ++  R+    N     G +   +  R   V G+   L
Sbjct: 91  LDAGANDYLAKPFHLAELEARIRSLTLRQFTQQNVLLSCGGLSFDTRSRTAAVNGQTLTL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGF 207
            R+E  ILEYLM ++G+ V++ ++   ++   D +V+   N +  HIS LRKKLR  LG+
Sbjct: 151 TRKETGILEYLMVHQGRPVSQEELIDHVW---DNSVDSFSNSIRVHISALRKKLRAVLGY 207

Query: 208 DPVDSKRFLGY 218
           DP+ ++   GY
Sbjct: 208 DPIRNRIGEGY 218


>gi|332533011|ref|ZP_08408881.1| response regulator [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037490|gb|EGI73943.1| response regulator [Pseudoalteromonas haloplanktis ANT/505]
          Length = 219

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 109/222 (49%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D  LV  G I     +G S+E   +++   E L S   E V        G G +V
Sbjct: 3   LLLVEDDHLVAQGLIRSLRQEGYSVEHSGTVKHALECLSSGEIELVILDLGLPDGDGSQV 62

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   + I+A  +V P++ ++   S+   +   D G DD + KP    E+ AR+    RR+
Sbjct: 63  L---KYIKAQKKVIPVVILTARGSIDDKVQGLDMGADDYLAKPFDPAELFARLRVASRRI 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  ++    G + + +     ++ G+   LPR+E  +L+ LM N+G+  +K Q+ + +Y
Sbjct: 120 NQTQSSLLRCGDVVMDTSAHTVKLSGQSLTLPRKEYMLLKALMENQGRVQSKQQLENKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + E V  N +E HI  LRKK  +    D + + R +GY +
Sbjct: 180 Q-WGEEVGSNAIEVHIHHLRKKFPS----DFIKTLRGIGYVV 216


>gi|170690127|ref|ZP_02881294.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170144562|gb|EDT12723.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 223

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R    VP+I ++ + S    +D F++G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  LARLRRRGDMVPVIMLTAHGSTDDKVDCFNAGADDYVVKPFDVRELVARIKALIRRQSGG 122

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   T G ++  SD R+     E   L RRE  +LE LM  +GK V+K+ +  +++ L 
Sbjct: 123 MSSCLTCGDLQYISDTREFFHNDERLALRRREHTVLETLMLRQGKTVSKSVLMESVFSLD 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           DE    + ++ +I +LRK L        + + R LGY
Sbjct: 183 DEP-SADAIDIYIHRLRKHLARSSA--QIMTLRGLGY 216


>gi|160903356|ref|YP_001568937.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160361000|gb|ABX32614.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 232

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 91/172 (52%), Gaps = 5/172 (2%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            ++  G  V ELP++   + ++ +I IS   +    +   +SG DD + KP + RE+ AR
Sbjct: 54  LMLPDGNAVDELPKVRALNREIGIIIISAKNTDGEKILGIESGADDYITKPFNPREVTAR 113

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V A+ +RLK S ++   GP+ ++S+      +G+   L  +E  IL+ L  N  K   + 
Sbjct: 114 VRALLKRLKKSESKMIFGPMEIYSNNYLVTYKGKNIELTSKEFEILDLLARNSEKVYTRE 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +I   I+   DE + + V++ HIS     +R+K+G + + + R +GY  + N
Sbjct: 174 EIIDKIW-FGDEFITDRVIDVHIS----MIRSKIGKEWIKTIRNVGYKFNKN 220


>gi|88860809|ref|ZP_01135446.1| probable two-component response regulator transcription regulator
           protein [Pseudoalteromonas tunicata D2]
 gi|88817404|gb|EAR27222.1| probable two-component response regulator transcription regulator
           protein [Pseudoalteromonas tunicata D2]
          Length = 227

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 9/217 (4%)

Query: 13  DGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           D  +A F + G+  EG+    + + +E L+ +   D   I   ++      LE+ + +R 
Sbjct: 9   DDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGLEVCQALRI 68

Query: 70  HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSN-NR 125
               VP+I ++     Q  +     G DD V KP  + E+LAR+ A+ RR   ++ N N 
Sbjct: 69  KKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTPNEIKNTNI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E GP+          +  E   L  +E  ILE LM N GK +++ +I S ++G+  + +
Sbjct: 129 LEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNVWGMEMDPM 188

Query: 186 EENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             NVV+ +I KLRKKL     G   +++KR +GY ++
Sbjct: 189 -TNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRLN 224


>gi|84500835|ref|ZP_00999070.1| DNA-binding response regulator CtrA [Oceanicola batsensis HTCC2597]
 gi|84390902|gb|EAQ03320.1| DNA-binding response regulator CtrA [Oceanicola batsensis HTCC2597]
          Length = 238

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     +  +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRVSRI--ETPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG + V  D +  EV+G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSIIRTGKVSVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            +YG  DE  E  +++  I KLRKKL    G D
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSTATGGD 208


>gi|254476592|ref|ZP_05089978.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. R11]
 gi|214030835|gb|EEB71670.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. R11]
          Length = 239

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     +  +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRMARI--ETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG I V  D +  EV G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSIINTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL    G
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSTATG 206


>gi|254466033|ref|ZP_05079444.1| two component transcriptional regulator, winged helix family
           [Rhodobacterales bacterium Y4I]
 gi|206686941|gb|EDZ47423.1| two component transcriptional regulator, winged helix family
           [Rhodobacterales bacterium Y4I]
          Length = 239

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S        +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRMSRI--ETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +  +TG I V  D +  E  G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSIIKTGKISVNLDAKTVEADGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL N  G
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSNATG 206


>gi|302382325|ref|YP_003818148.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192953|gb|ADL00525.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 237

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R      P++ +S    ++T +  F  G DD + KP H  E++AR  A+ RR 
Sbjct: 60  LEVLRQLRVGKINTPVMILSGSTEIETKVKTFGGGADDYMTKPFHKDELIARTHAVVRRS 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K  +     TG I V  DG+  EV G    L  +E ++LE L   +G  + K    + +Y
Sbjct: 120 KGHAQAIIHTGEIAVNLDGKTVEVHGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206
           G  DE  E  +++  I KLRKKL    G
Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKLATAAG 206


>gi|254524631|ref|ZP_05136686.1| two-component response regulator [Stenotrophomonas sp. SKA14]
 gi|219722222|gb|EED40747.1| two-component response regulator [Stenotrophomonas sp. SKA14]
          Length = 223

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 4/165 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G   +   R +R +  V  I ++   +L   ++  D G DD + KP+   E++AR+ A
Sbjct: 57  GDGAGFVATARSLRPNLAV--IMLTAKGTLSDKVEGLDVGADDYLVKPVAIEELMARIRA 114

Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR   +       G +    +    +V+G+  PLPRR+  +L+ L   +G+ V ++ +
Sbjct: 115 VSRRPSAMVTPSLRLGRLEFDFESLQAQVEGQPLPLPRRQVLVLQALAMRQGRTVTRSAL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +A+YG FD+ ++ N +++HISKLRK L+       +   R +GY
Sbjct: 175 EAAVYG-FDDEIQSNALDAHISKLRKALQQAGAGVEIHVIRGVGY 218


>gi|226326076|ref|ZP_03801594.1| hypothetical protein COPCOM_03894 [Coprococcus comes ATCC 27758]
 gi|225205618|gb|EEG87972.1| hypothetical protein COPCOM_03894 [Coprococcus comes ATCC 27758]
          Length = 209

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +R  ++   ++ +S    +   ++  DSG +D + KP H +E+ ARV ++ RR 
Sbjct: 46  MEILRELRKENEETKVLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSLTRRK 105

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N   E G +R  +  R          L R+E  ILEYL+ N+G+ V++ ++   ++
Sbjct: 106 FIQKNICLECGKLRFDTRERVAYADDNPVALTRKENGILEYLLLNQGRPVSQEELIEHVW 165

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D +V+     +  H+S LRKKL+  LG+DP+ +K   GY I
Sbjct: 166 ---DSSVDSFSGSIRVHMSSLRKKLKAGLGYDPIVNKIGEGYKI 206


>gi|167035223|ref|YP_001670454.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861711|gb|ABZ00119.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 241

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  +E     E   +       D++ ++  L   G   L
Sbjct: 19  LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIVDLGL--PGISGL 76

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   +R+  +  P++ ++   + Q  ++   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 77  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 136

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +      L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 137 GFTQSTIAAGPLVLDLNRKQATLDELPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 196

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY
Sbjct: 197 -GDEERDPNVIEVLVGRLRRKLEGAHGFKPIDTVRGLGY 234


>gi|134293501|ref|YP_001117237.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136658|gb|ABO57772.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 224

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++R E GP+   S  R  ++ G    L  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSRIECGPLAYDSVDRSFQLAGAALSLTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219


>gi|15890352|ref|NP_356024.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15158564|gb|AAK88809.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 224

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK----G 57
            +LI+D   + D   A  G  G+ ++  +++   + ++ + +      +A L+ +    G
Sbjct: 3   LLLIEDEKEMADALSATLGKQGIVID--HTMRLGDAMELTRQH---LYDAILLDRRLPDG 57

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E +  +P++ RA    P+I ++     +  +   D G DD + KP    E+LARV A+ R
Sbjct: 58  EGLAFIPKLRRAGVDTPIILLTAMNEPEDRIAGLDGGADDYLGKPFLVGELLARVRAVLR 117

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFS 175
           R       AE    R+  D     V     P  LPRRE  +L  L   +GK V ++ + +
Sbjct: 118 R-PSGLAPAEIAAGRIVIDPLHLSVTINSLPFDLPRRELLVLVALAKRKGKSVLRSTLEA 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           A+Y  ++E ++ N +++HIS+LRK+L +      V + R +GY
Sbjct: 177 AVYN-YEEEIQSNALDAHISRLRKRLLDASAGVSVHNIRGIGY 218


>gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 230

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 6/168 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +R  ++   VP+I ++        +   D+G DD V KP    E+ ARV A+ R
Sbjct: 62  IEVCRRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVMR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++  ++++R   G I +       +  G+   L   E R+L+YLM + G+  ++ Q+  
Sbjct: 122 RIRPGLADDRITVGDIVIDRVAHRVKRNGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           A++G  D  VE   V+ HI +LRK L      DP+ + R  GYS+D +
Sbjct: 182 AVWG-SDVYVEARTVDVHIGRLRKALNGSSDGDPIRTVRSAGYSLDLD 228


>gi|83312342|ref|YP_422606.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947183|dbj|BAE52047.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 225

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 6/210 (2%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRAHSQ 72
           +A F   G+   GF    F     ++A  + +A +A ++  G      L++ R  RA + 
Sbjct: 12  LAEFISAGLKSAGFVPDVFGTVADATAAFESAAYQAAILDLGLPDGDGLDIVRAQRAKAA 71

Query: 73  -VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
             P++ ++    +   +   ++G DD + KP    E++AR+ AI RR   + +     G 
Sbjct: 72  PCPIMVLTARDRVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPGAALSVELSLGN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +   + GR+  V G++  +PRRE  +LE+L+   GK V+K  +   +YG FD+ V  N V
Sbjct: 132 LTFDTAGREVRVDGQLVAMPRREMEMLEHLLRRSGKVVSKRSLEEGLYG-FDDDVTPNSV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E  +S+LRK+L+       V + R +GY +
Sbjct: 191 EVLVSRLRKRLQQTGAGVTVHTLRGIGYML 220


>gi|295104695|emb|CBL02239.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 225

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 89/164 (54%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +R H  +  ++ +S    +   ++  D+G +D ++KP H  E+ ARV ++ RR 
Sbjct: 60  MQVLRSLRQHDLETCVLILSARSEISDKVEGLDAGANDYLSKPFHLAELEARVRSLTRRK 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +     G +   +  R   V  +   L R+E  +LEYL+ ++G+ V++ ++   ++
Sbjct: 120 FIQQDVCLCCGRLSFNTRSRVATVDSQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVW 179

Query: 179 GLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D +V+   N +  HIS LRKKLR  LG+DP+ ++   GY I
Sbjct: 180 ---DGSVDSFSNSIRVHISALRKKLRAALGYDPIRNRIGEGYEI 220


>gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
 gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces clavuligerus ATCC 27064]
 gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 3/132 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP  +  ++AR+ A+ RR +       E G +RV    R  E  G   PL
Sbjct: 91  LDTGADDYVTKPFSYIALVARLRALVRRGRRERPPVIEIGDLRVDPATRRCERSGTPVPL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             RE  +L YL A RG+ VAKT+I   ++G F+  V  NVVE ++S LR+K+    G   
Sbjct: 151 TAREFGVLWYLAAQRGEVVAKTEILDHVWGDFEGDV--NVVEVYVSALRRKIDTPFGRRT 208

Query: 210 VDSKRFLGYSID 221
           + + R  GY ++
Sbjct: 209 IHTVRGAGYRLE 220


>gi|326387977|ref|ZP_08209581.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207478|gb|EGD58291.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 218

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 89/162 (54%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++L R  RA     P+I ++   S Q  ++  ++G DD V KP+   E+LAR+ A++RR 
Sbjct: 60  MDLLRYWRARRIACPVIILTARGSWQDKVEGLNAGADDFVVKPVRFEELLARLHAVWRRQ 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  ++   E G +R+    +  E++GE   L R E R+L   + + GK +++++I   +Y
Sbjct: 120 QGAADAWIEKGALRLNPADKKAELEGEELALSRMEFRLLHLFLRHAGKPLSQSEIMDHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            L D   + N VE  I +LR+    K+G + +++ R  GY +
Sbjct: 180 DL-DSERQANAVEVLIGRLRR----KIGSERIETLRGFGYRL 216


>gi|24373664|ref|NP_717707.1| DNA-binding response regulator YgiX, putative [Shewanella
           oneidensis MR-1]
 gi|24348011|gb|AAN55151.1|AE015651_10 DNA-binding response regulator YgiX, putative [Shewanella
           oneidensis MR-1]
          Length = 219

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 14/223 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58
            +L++D  L+  G        G+ ++  +S  + + L     E  SAI   L    G G+
Sbjct: 3   IMLVEDNELLAQGICLSLAKMGMQVDHLSS--YHQALVGIKNETFSAIVLDLGLPDGNGK 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +L+  R       +P I ++      T L+  D G DD + KP   RE+ AR+ AI RR
Sbjct: 61  DLLKAWR--SQGVSIPTIVLTANTDFDTKLECLDVGADDYLGKPFDVRELAARIRAIVRR 118

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + +N    G + +  + R+   + +   L RRE ++L  L  + G+ + + Q+    
Sbjct: 119 QFGLDHNSLNIGALSIDLNTREVTFRDQNVSLSRREFQLLLELAQSAGRVLTRNQLEQLT 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG +DE V  N +E HI  LRKKL N+L    + + R +GY++
Sbjct: 179 YG-WDE-VGSNSIEVHIHHLRKKLANEL----IKTVRGIGYTL 215


>gi|260438896|ref|ZP_05792712.1| phosphate regulon transcriptional regulatory protein PhoB
           [Butyrivibrio crossotus DSM 2876]
 gi|292808545|gb|EFF67750.1| phosphate regulon transcriptional regulatory protein PhoB
           [Butyrivibrio crossotus DSM 2876]
          Length = 224

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 15/212 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+  GY  +  +DG           E+ L+      V  + A ++       E  +I+R 
Sbjct: 21  LLGAGYTPVLAEDG-----------EKALEIYNTHHVDMVIADIMMPNLDGYEFTKILRK 69

Query: 70  HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +Q +P+I +S           F +G+DD + KP+   E+L  + AI RRLK++ +R  T
Sbjct: 70  SNQDIPIIMVSAKELPDDRKKGFKAGIDDYLVKPVDEEELLLHIKAIERRLKIAGDRKIT 129

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +  D     V GE   LP++E ++L  L++N G+   + Q+   I+G  D     
Sbjct: 130 IGSVVLDYDSFTVNVNGEEILLPQKEFKLLYLLLSNPGRIYTRIQLMDEIWGT-DTDTGW 188

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             V  HI +LRK+  N   F+ V S R LGY 
Sbjct: 189 ETVTVHIGRLRKRFENIKEFEIV-SVRGLGYK 219


>gi|46201698|ref|ZP_00208213.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 225

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 30/222 (13%)

Query: 9   ALVKDGYIA-LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL   G++  +FG+   ++  F S  ++  +      D         G G   L++ R  
Sbjct: 19  ALKSAGFVPDVFGNKADAIAAFESATYQAAILDLGLPD---------GDG---LDIIRAQ 66

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           RA S   P++ ++    +   +   ++G DD + KP    E++AR+ AI RR        
Sbjct: 67  RAKSAPCPMMVLTARDGVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPGAALSVE 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L +SN   +T        GR+  V G +  +PRRE  +LE+L+   GK V+K  +   +Y
Sbjct: 127 LSLSNLTFDT-------TGREVRVDGTLISMPRREMEMLEHLLRRAGKVVSKRSLEEGLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD+ V  N VE  +S+LRK+L+       V + R +GY +
Sbjct: 180 G-FDDDVTPNSVEVLVSRLRKRLQQTGARLTVHTLRGIGYML 220


>gi|292490612|ref|YP_003526051.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291579207|gb|ADE13664.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 223

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 31/220 (14%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELP 64
           R L + G++    D+GV  E    L FEE             EA ++  G      L++ 
Sbjct: 18  RELTQQGFVVDTADNGVDAE---FLGFEE-----------PYEAVILDLGLPQRSGLDVL 63

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R  R H ++VP++ ++   +    ++ F  G DD ++KP H  E+LAR+ A+ RR   S 
Sbjct: 64  RHWRDHDNRVPVLILTARDAWHEKVEGFKCGADDYLSKPFHTEELLARLQALIRR---SQ 120

Query: 124 NRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           NR     +   S   D E Q     G +  L   E R+L Y M + G+ ++K+++   +Y
Sbjct: 121 NRPHQSQLTSHSLTLDEERQCVHKDGHLIELTGTEFRLLRYFMLHPGRILSKSRLTEQVY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            L D   + NV+E ++++LRK    K+G D + ++R  GY
Sbjct: 181 AL-DADKDSNVMEVYVNRLRK----KVGSDLIKTRRGQGY 215


>gi|149185450|ref|ZP_01863766.1| DNA-binding response regulator CtrA [Erythrobacter sp. SD-21]
 gi|148830670|gb|EDL49105.1| DNA-binding response regulator CtrA [Erythrobacter sp. SD-21]
          Length = 231

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 2/145 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L ++  A  Q P++ +S    + + +  F  G DD V KP H  E++AR+ A+ RR K  
Sbjct: 63  LKKLRVAKVQTPVLILSGVAEMDSKIRSFGFGADDYVTKPFHREELIARIHAVVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +   TG + V  D +  EV G    L  +E  +LE L   +G  + K    + +YG  
Sbjct: 123 SQSIIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206
           DE  E  +++  I KLRKKL +  G
Sbjct: 183 DEP-ELKIIDVFICKLRKKLSHACG 206


>gi|159184556|ref|NP_353994.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159139861|gb|AAK86779.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 223

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LARV A+ RR    +++    GP+R+ +      V G    L
Sbjct: 91  IDAGADDYVTKPFHVEEVLARVRALIRRAAGHASSELVCGPVRLDTKSSKATVNGTTLKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + +LRK    K+G D
Sbjct: 151 TSHEFRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KIGVD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY +
Sbjct: 205 LIETIRGLGYRM 216


>gi|255526633|ref|ZP_05393539.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186093|ref|ZP_06854498.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509666|gb|EET86000.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049361|gb|EFG88790.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 227

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 102/197 (51%), Gaps = 19/197 (9%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY       G+ +LE F+S+EF   +      D+         +GE   E+ +IIR
Sbjct: 21  LEKEGYEVYTSTTGLKALELFDSIEFNLIILDLMLPDI---------QGE---EICKIIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             S V +  ++   +L+  ++  ++G D+ + KP   RE++ARV +++RRL VSNN +  
Sbjct: 69  NKSDVYIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRL-VSNNSSIL 127

Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + G + +  D R  +V+G    L   E  IL  L  N+GK + + Q+   ++G+  E 
Sbjct: 128 CFDNGNLEIHKDSRIVKVKGLEVSLTPNEFDILYSLAMNKGKVLTREQLIDRVFGMDFEG 187

Query: 185 VEENVVESHISKLRKKL 201
            +   V+ HI  +RKK+
Sbjct: 188 FDR-TVDVHIKNIRKKI 203


>gi|149919419|ref|ZP_01907900.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
 gi|149819725|gb|EDM79150.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
          Length = 223

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 106/220 (48%), Gaps = 13/220 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEKV 60
           +LIDD A + +      G +GV LE  ++++    L+  A E  DV  ++  +   G   
Sbjct: 6   LLIDDDARLFELLSGYLGQNGVELE--HAVDGAAGLRVLANESHDVVLLDGMM--PGMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ R +RA S +P++ ++        +   + G DD + KP   RE+LAR+ A+ RR+ 
Sbjct: 62  LEVLRRLRARSAIPVLMLTARGDEADRVVGLELGADDYIAKPFSSRELLARLRAVLRRMH 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V   R     +      R+  V+GE   L   E  +L  L+   G+ V +  +     
Sbjct: 122 PEVGRERLSANGVVALIGTREVRVEGEAASLTGLEFDLLVALLRRAGRVVTRAALLHE-A 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G  D  V E  V+ HISKLRK    KLG D + + R +GY
Sbjct: 181 GRDDTVVSERTVDVHISKLRK----KLGGDKIKTVRGVGY 216


>gi|224988879|ref|YP_002643566.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|224771992|dbj|BAH24798.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
          Length = 227

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 18/208 (8%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +    +   + A  D +  +  L+     G    ++ + +RA S VP+I ++   S
Sbjct: 24  EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138
               +   + G DD V KP   RE++AR+ A+ RR      ++S+   E+GP+R+  +  
Sbjct: 84  EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 143

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G+   LP +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ H+    
Sbjct: 144 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198

Query: 199 KKLRNKLGFDPVDSKRF-----LGYSID 221
           K+LR+K+  DP +         LGY ++
Sbjct: 199 KRLRSKIEADPANPVHLVTVCGLGYKLE 226


>gi|254246631|ref|ZP_04939952.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124871407|gb|EAY63123.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 225

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A +    + L   +  +++     E  + +  + R D   ++  L G  G++V
Sbjct: 3   LLLVEDNAELAHWIVNLLRGEDFAVDSVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L   R+ R +  VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR  
Sbjct: 63  L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V   +   G +      R+      V  L RRE  ILE LM  + K V+K ++  +++ 
Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L DE    + ++ +I +LRK L        + + R LGY
Sbjct: 181 LDDEP-SADAIDIYIHRLRKHLAGSTA--EIITLRGLGY 216


>gi|94497501|ref|ZP_01304071.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
 gi|94423132|gb|EAT08163.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
          Length = 235

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 2/147 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L ++  A  Q P++ +S    + + +  F  G DD V KP H  E++AR+ A+ RR K  
Sbjct: 63  LKKLRAAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +   TG + V  D +  EV G    L  +E  +LE L   +G  + K    + +YG  
Sbjct: 123 SQSVIRTGKLSVNLDAKTVEVDGNRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD 208
           DE  E  +++  I KLRKKL    G D
Sbjct: 183 DEP-ELKIIDVFICKLRKKLALACGGD 208


>gi|218437945|ref|YP_002376274.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218170673|gb|ACK69406.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 238

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 114/225 (50%), Gaps = 19/225 (8%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I  R L ++ Y+  +  DG +   +N LE +EW++ S      AI  +L+ K   +    
Sbjct: 15  IIQRMLNRENYLVDWVQDGAT--AWNYLE-QEWIEYSV-----AIFDWLLPKISGLELCQ 66

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R+ + +  +P++ ++    +Q  +   D+G DD + KP    E+LAR+ A+ RR L +  
Sbjct: 67  RLRQQNCSLPVLILTAKSDIQDMVTGLDAGADDYLIKPFVKAELLARIRALQRRALHIQP 126

Query: 124 NRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++ + GP+        VF+   + + + +  PL   E R+LEY M +  + + + Q+ + 
Sbjct: 127 SQLQIGPLTLDYAKSSVFTS--NSQGKPQTIPLTANEFRLLEYFMKHPNQTLTRDQLLAQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   D+A   NVV + I  LR+KL +    D +++    GY ++
Sbjct: 185 LWET-DDAPISNVVSARIRLLRRKLADYGCKDLIETVHGFGYRLN 228


>gi|326386598|ref|ZP_08208220.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208913|gb|EGD59708.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 233

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 2/145 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L ++  A  Q P++ +S    + + +  F  G DD V KP H  E++AR+ A+ RR K  
Sbjct: 63  LKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +   TG + V  D +  EV G    L  +E  +LE L   +G  + K    + +YG  
Sbjct: 123 SQSVIRTGKLSVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206
           DE  E  +++  I KLRKKL +  G
Sbjct: 183 DEP-ELKIIDVFICKLRKKLAHACG 206


>gi|87198328|ref|YP_495585.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134009|gb|ABD24751.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 233

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL+  R+  A  Q P++ +S    + + +  F  G DD V KP H  E++AR+ A+ 
Sbjct: 59  GYDVLKKLRV--AKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG + V  D +  EV G    L  +E  +LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSVIRTGKLSVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL +  G
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAHACG 206


>gi|159044057|ref|YP_001532851.1| cell cycle transcriptional regulator ctrA [Dinoroseobacter shibae
           DFL 12]
 gi|157911817|gb|ABV93250.1| cell cycle transcriptional regulator ctrA [Dinoroseobacter shibae
           DFL 12]
          Length = 237

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     ++ +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQIRLARI--ETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +  +TG I V  D +  EV G    L  +E +ILE L   +G  + K    +
Sbjct: 117 RRSKGHSQSVIKTGEILVNLDAKTVEVDGMQVHLTGKEYQILELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL    G
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSQATG 206


>gi|206561833|ref|YP_002232598.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198037875|emb|CAR53819.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 225

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A +    + L   +  +++     E  + +  + R D   ++  L G  G++V
Sbjct: 3   LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L   R+ R +  VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR  
Sbjct: 63  L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V   +   G +      R+      V  L RRE  ILE LM  + K V+K ++  +++ 
Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L DE    + ++ +I +LRK L        + + R LGY
Sbjct: 181 LDDEP-SADAIDIYIHRLRKHLAGSTA--EIITLRGLGY 216


>gi|107021602|ref|YP_619929.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116688054|ref|YP_833677.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105891791|gb|ABF74956.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116646143|gb|ABK06784.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
          Length = 225

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A +    + L   +  +++     E  + +  + R D   ++  L G  G++V
Sbjct: 3   LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L   R+ R +  VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR  
Sbjct: 63  L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V   +   G +      R+      V  L RRE  ILE LM  + K V+K ++  +++ 
Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L DE    + ++ +I +LRK L        + + R LGY
Sbjct: 181 LDDEP-SADAIDIYIHRLRKHLAGSTA--EIITLRGLGY 216


>gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 228

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 27/223 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG +          E+ +S A  D+  ++  L G G    ++ + +RA
Sbjct: 21  LRKEGFETVIAGDGPA-------ALTEFDRSGA--DIVLLDLMLPGMGGN--DVCKQLRA 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126
            S VP+I ++   S    +   + G DD V KP   RE+ AR+ A+ RR + +++     
Sbjct: 70  RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQEADSETSAE 129

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E GPI++  D     V  +   LP +E  +LEYLM NRG+ + + Q+   ++G  D 
Sbjct: 130 GVLEAGPIKLDVDRHLVSVHSKHVTLPLKEFDLLEYLMRNRGRVLTRGQLIDRVWG-ADY 188

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
             +   ++ H+ +LR K+ +    DP    R      LGY ++
Sbjct: 189 VGDTKTLDVHVKRLRSKIED----DPAKPDRLVTVRGLGYKLE 227


>gi|226947464|ref|YP_002802555.1| regulatory protein VanR [Clostridium botulinum A2 str. Kyoto]
 gi|226842915|gb|ACO85581.1| regulatory protein VanR [Clostridium botulinum A2 str. Kyoto]
          Length = 233

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 12/164 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  ++ P+I +S   S +T L+  + G DD + KP    E++ARV +  RR L+ S ++
Sbjct: 70  IRKITKAPIIIVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVNSNLRRYLEFSTDK 129

Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + G I ++ D       ++ +V   +  L  RE  +LE L+ N  K  +K  IF +I+G
Sbjct: 130 EKKGNILIYKDITLNKESKEVKVGQTIVILTAREFAVLELLLNNPNKVYSKANIFESIWG 189

Query: 180 LFDEAV-EENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220
             +E + ++N V  H+S++R KL   N  G D +++   +GY +
Sbjct: 190 --EEFLGDDNTVNVHVSRMRSKLSRANNNGEDYIETVWAMGYRL 231


>gi|170731404|ref|YP_001763351.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169814646|gb|ACA89229.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 225

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A +    + L   +  +++     E  + +  + R D   ++  L G  G++V
Sbjct: 3   LLLVEDNAELAHWIVNLLRGEDFAVDSVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R+ R +  VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR  
Sbjct: 63  L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V   +   G +      R+      V  L RRE  ILE LM  + K V+K ++  +++ 
Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L DE    + ++ +I +LRK L        + + R LGY
Sbjct: 181 LDDEP-SADAIDIYIHRLRKHLAGSTA--EIITLRGLGY 216


>gi|110633248|ref|YP_673456.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284232|gb|ABG62291.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 222

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 8/160 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R  R   ++P++ ++        +   D+G DD V KP H  E+LARV A+ RR    
Sbjct: 63  LERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVTKPFHMEEVLARVRALIRRAAGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           +++    GP+R+ +     ++ G    L   E R+L YLM ++G  V++T++   +Y   
Sbjct: 123 ASSELYCGPLRLDTKASKADMDGVPLKLTSHEYRMLAYLMHHKGSVVSRTELVEHLYDQD 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + N +E  + +LRK    KLG D +++ R +GY +
Sbjct: 183 FDR--DSNTIEVFVGRLRK----KLGVDLIETVRGMGYRM 216


>gi|296283968|ref|ZP_06861966.1| phosphate regulon response regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 229

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 6/171 (3%)

Query: 56  KGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +G   +E+ R +R     + VP+I ++   +    +   ++G DD + KP   RE+LARV
Sbjct: 58  EGTSGIEVCRRLRRDKGTAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARV 117

Query: 113 AAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           AA+ RR++  ++    E G IR+       E +G    L   E R+L++ M + G+  ++
Sbjct: 118 AAVMRRIRPALAGETIEVGDIRLDPVAHKVERRGRNLQLGPTEYRLLKFFMESPGRVFSR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            Q+   ++G   + +E   V+ HI +LRK L  +   DP+ + R  GY+++
Sbjct: 178 GQLLDGVWGTGSD-IELRTVDVHIRRLRKALELEGASDPIRTVRSAGYALE 227


>gi|257459560|ref|ZP_05624669.1| transcriptional regulatory protein QseB [Campylobacter gracilis
           RM3268]
 gi|257442985|gb|EEV18119.1| transcriptional regulatory protein QseB [Campylobacter gracilis
           RM3268]
          Length = 220

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 105/216 (48%), Gaps = 18/216 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRI 66
           + L KDGY         +  G  +LEF +     A+ D   ++A + +  G    E  + 
Sbjct: 18  KCLKKDGYSV-----DCAFCGKEALEFLD----VAKYDAIVLDAMMPVMDG---FEFLKA 65

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NN 124
            RA     P++ ++   + +  +   D G DD + KP   RE+LAR+ AI RR   + +N
Sbjct: 66  ARARGLGTPVLFLTARDAKEDIIAGLDLGADDYMVKPFDFRELLARLRAIIRRKNATADN 125

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 +R+    +     GEV  L  +E RILE LM NRG  +++ QI  +I+   DEA
Sbjct: 126 EIIIRQVRLNLSKKSVVCAGEVVELTGKEYRILELLMLNRGAILSREQIGESIWDFSDEA 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              NV++  I  +RKKL      D +++KR LGY +
Sbjct: 186 -SSNVIDVLIKNIRKKLGEH--GDIIETKRGLGYVV 218


>gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 229

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 17/181 (9%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G    ++ + +R+ S VP+I ++   S    +   + G DD V KP   RE++ARV
Sbjct: 53  LMLPGMSGTDVCKALRSRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARV 112

Query: 113 AAIYRR-------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
            A+ RR        +  N   E GP+R+  +     V G+  PLP +E  +LEYL+ N G
Sbjct: 113 RAVLRRGGEATGETESGNGILEAGPVRMDVERHVVSVNGDDVPLPLKEFDLLEYLLRNVG 172

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSI 220
           + + + Q+   ++G  D   +   ++ H+ +LR K+ +    DP   K     R LGY  
Sbjct: 173 RVLTRAQLIDRVWG-ADYVGDTKTLDVHVKRLRSKVED----DPSTPKHLVTVRGLGYKF 227

Query: 221 D 221
           D
Sbjct: 228 D 228


>gi|326202666|ref|ZP_08192534.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987250|gb|EGD48078.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 223

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 87/163 (53%), Gaps = 4/163 (2%)

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R  S   P++ ++    L+     F +G DD + KPI+ +E++ RV A+ RR K
Sbjct: 63  ELTKELRDASYAQPILMVTAKDQLEDMEQGFRAGTDDYMIKPINLKEMILRVNALLRRSK 122

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++N  R   G   +        + G+ F +P +E  +L  L++N  K   + +I   I+G
Sbjct: 123 IANEKRLIVGKTVLDYSQMTIYIGGQEFEIPPKEFYLLFLLLSNPNKIFTRLEILDEIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D  V+E  V+SHI KLR+K  N + F+ + + R LGY   +
Sbjct: 183 M-DSEVDERTVDSHIKKLRRKFENCMDFEII-TIRGLGYKAKY 223


>gi|332715573|ref|YP_004443039.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325062258|gb|ADY65948.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 224

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 114/222 (51%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK----G 57
            +LI+D   + D      G  G+ ++  +++   + ++  AR+ V   +A L+ +    G
Sbjct: 3   LLLIEDEKEMADALSTTLGKQGIVID--HTMRLGDAMEL-ARQHV--YDAILLDRRLPDG 57

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E +  +P++ RA    P+I ++     +  ++  + G DD + KP    E+LAR+ A+ R
Sbjct: 58  EGLTFIPKLRRAGIDTPIILLTAMNEPEERIEGLNGGADDYLGKPFLVGELLARLRAVLR 117

Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   ++ ++   G I +        +    F LPRRE  +L  L   +GK V ++ + +A
Sbjct: 118 RPASIAPSQIAAGRIVIDPLHLSVTINSLPFDLPRRELMVLITLAKRKGKSVLRSTLEAA 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +Y  ++E ++ N +++HIS+LRK+L +      V + R +GY
Sbjct: 178 VYN-YEEEIQSNALDAHISRLRKRLLDASAGVSVHNIRGIGY 218


>gi|296445613|ref|ZP_06887568.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296256858|gb|EFH03930.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 224

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  +A   +P++ ++        +  FD+G DD V KP H  E+LAR+ A+ 
Sbjct: 59  GVSVLEQWR--KAGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEELLARMRALL 116

Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    + +    GP+R+ +      V G    L   E R+L YLM + G+ V++ +I  
Sbjct: 117 RRAAGHATSEIVCGPVRLDTKAGRVVVDGNAVKLTSHEYRLLAYLMHHNGRVVSRGEIVE 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   FD   + N VE  + +LRK    KLG D + + R LGY
Sbjct: 177 HLYDQDFDR--DSNTVEVFVGRLRK----KLGVDVIQTVRGLGY 214


>gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 228

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 88/164 (53%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  S VP+I ++   +++  ++  D G DD + KP    E++AR+    RR  
Sbjct: 64  IEICRRVREISNVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLNNALRRRD 123

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++    ++R     + +F    + +V GE+  L +RE  +LEYL+ N+   + + QI   
Sbjct: 124 LAEGDPSDRLTVKNLVMFLSRYEVQVDGEIVALTKREYDLLEYLLRNKRTVLTRDQILQE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   E NVV+ +I  LR KL ++     + + R +GY +
Sbjct: 184 VWG-FDYTGETNVVDVYIRYLRAKLDDRFHQKYIYTVRGVGYVV 226


>gi|85375673|ref|YP_459735.1| DNA-binding response regulator CtrA [Erythrobacter litoralis
           HTCC2594]
 gi|84788756|gb|ABC64938.1| DNA-binding response regulator CtrA [Erythrobacter litoralis
           HTCC2594]
          Length = 231

 Score = 75.1 bits (183), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 2/145 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L ++  A  Q P++ +S    + + +  F  G DD V KP H  E++AR+ A+ RR K  
Sbjct: 63  LKKLRVAKVQTPVLILSGIAEMDSKIRSFGFGADDYVTKPFHREELVARIHAVVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +   TG + V  D +  EV G    L  +E  +LE L   +G  + K    + +YG  
Sbjct: 123 SQSIIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206
           DE  E  +++  I KLRKKL +  G
Sbjct: 183 DEP-ELKIIDVFICKLRKKLSHACG 206


>gi|255261349|ref|ZP_05340691.1| cell cycle transcriptional regulator CtrA [Thalassiobium sp. R2A62]
 gi|255103684|gb|EET46358.1| cell cycle transcriptional regulator CtrA [Thalassiobium sp. R2A62]
          Length = 238

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     +  L  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLARI--ETPILILSGSDDTENKLKGFGYGADDYMTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +  +TG + V  D +  EV G+   L  +E +++E L   +G  + K    +
Sbjct: 117 RRSKGHSQSIIKTGRVMVNLDAKTVEVGGKTVHLTGKEYQMIELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL    G
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLATATG 206


>gi|126728826|ref|ZP_01744641.1| two component response regulator [Sagittula stellata E-37]
 gi|126710756|gb|EBA09807.1| two component response regulator [Sagittula stellata E-37]
          Length = 249

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 4/157 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRA 126
           R +   P+I ++        +   D+G DD + KP    E+ AR+ A+ RR  +    R 
Sbjct: 94  RRNDGTPVILLTARSETAERVAGLDAGADDYLTKPFEMDELEARLRAMARRKNIEFAARD 153

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + GP+     GR      +   +PRRE   LE L+  RG+ V+K Q+ S +YG+  +A E
Sbjct: 154 KLGPLVFDRTGRQLMQDEQALDIPRREIATLECLLERRGRLVSKAQLISHVYGIGSDA-E 212

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++ +E H+S+LRK+L    G   + + R LGY ++ +
Sbjct: 213 DSAIEPHVSRLRKRL-EPFGIR-IKTARGLGYMLEVD 247


>gi|218462225|ref|ZP_03502316.1| two-component response regulator protein [Rhizobium etli Kim 5]
          Length = 223

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    +++    GP+R+ +      V G    L
Sbjct: 91  IDAGADDYVTKPFHVEEVLARIRALIRRAAGHASSEIICGPVRLDTKSSKATVNGTPLKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + +LRK    K+G D
Sbjct: 151 TSHEYRLLAYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY I
Sbjct: 205 LIETVRGLGYRI 216


>gi|160943091|ref|ZP_02090328.1| hypothetical protein FAEPRAM212_00570 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445560|gb|EDP22563.1| hypothetical protein FAEPRAM212_00570 [Faecalibacterium prausnitzii
           M21/2]
          Length = 262

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 89/164 (54%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +R H  +  ++ +S    +   ++  D+G +D ++KP H  E+ ARV ++ RR 
Sbjct: 97  MQVLRSLRQHDLETCVLILSARSEIADKVEGLDAGANDYLSKPFHLAELEARVRSLTRRK 156

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +     G +   +  R   V  +   L R+E  +LEYL+ ++G+ V++ ++   ++
Sbjct: 157 FIQQDVCLCCGRLSFNTRSRVATVDSQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVW 216

Query: 179 GLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D +V+   N +  HIS LRKKLR  LG+DP+ ++   GY I
Sbjct: 217 ---DGSVDSFSNSIRVHISALRKKLRAALGYDPIRNRIGEGYEI 257


>gi|299134457|ref|ZP_07027650.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591204|gb|EFI51406.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 220

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 21/225 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D  ++ +G     G  G +L+  ++        + +  D   ++  L  G G   
Sbjct: 3   ILIVEDDPVISNGLKVGLGMFGATLDVVSTCADGRAAAALSEFDALVLDVMLPDGSG--- 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L   +RA   + P++ ++    +   +   DSG DD + KP    E+ ARV AI RR 
Sbjct: 60  LDLLTELRAGGDRTPVLMLTALDEIADRIKGLDSGADDYIGKPFDLDELAARVRAICRR- 118

Query: 120 KVSNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                RA   P   F+    DP      V  E  PL RRE  IL  LM++ G+ ++K +I
Sbjct: 119 --QTGRAS--PCLTFNGLTLDPAQMTVTVNDETNPLSRREFSILSALMSHPGRVMSKNEI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            S +YG + E +E N VE HI     KLR K+G + +++ R +GY
Sbjct: 175 ESRLYG-WQEEIESNTVEVHI----HKLRTKVGREKIETIRGIGY 214


>gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
 gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
          Length = 224

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 5/161 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  SQVP+I ++   ++   +   D+G DD + KP    E+LAR+  I RR+ 
Sbjct: 62  IEICRRIRTQSQVPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRVT 121

Query: 121 VSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +E+  +R   +     +  VQG    L + E  +L+ L+ ++ +   +  I +++
Sbjct: 122 PEQTNSESLCLRDIEIDVAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G +D  +E NVV+ +I  LR KL   +  D +++ R +GY
Sbjct: 182 WG-YDTDIETNVVDVYIRHLRTKLPGAMN-DYIETVRGVGY 220


>gi|326692942|ref|ZP_08229947.1| two-component system regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 4/169 (2%)

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  GE  LE+ + +R  + + P++ ++   SL   ++ F+ G DD + KP +  E+L R
Sbjct: 55  LMLPGENGLEVIKHLREKNIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLLR 114

Query: 112 VAAIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           V A+ RR  V   +N    G + +  + R  +V G+   L  +E  IL YL  N+   V 
Sbjct: 115 VKALLRRAGVYSEDNTIAVGDVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVT 174

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + QIF  ++G+ D     NVV  +++ LR+KL      D + + R +G+
Sbjct: 175 RDQIFDRVWGI-DSDTTINVVNIYLNNLRRKLEAVGQHDLIKTLRNIGF 222


>gi|30249380|ref|NP_841450.1| response regulator PhoP [Nitrosomonas europaea ATCC 19718]
 gi|30180699|emb|CAD85320.1| possible phoP; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 229

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 5/184 (2%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGV 95
           +L +  R D + I+  L GK    LE+ + +R   S +P++ ++   S Q  +   + G 
Sbjct: 38  FLATEYRPDAAIIDIGLPGKSG--LEIIKALRERGSLLPILILTARSSWQDKVQGLEMGA 95

Query: 96  DDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
           DD + KP    E+ ARV A+ RR + +     + GPI V    +   V G    L   E 
Sbjct: 96  DDYLTKPFQMEELQARVRALLRRAVGIPQTLLKCGPIAVDVTAQSVSVDGANIELTSFEY 155

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
           R+LE L+ +RG+ ++K  +  A+Y   +E  + NV+E  I +LR+KL  +    P+++ R
Sbjct: 156 RLLEELVCHRGEILSKESLADALYP-HNEDRDSNVLEVMIGRLRRKLDPEGTLKPIETMR 214

Query: 215 FLGY 218
             GY
Sbjct: 215 GRGY 218


>gi|269215547|ref|ZP_06159401.1| DNA-binding response regulator DltR [Slackia exigua ATCC 700122]
 gi|269131034|gb|EEZ62109.1| DNA-binding response regulator DltR [Slackia exigua ATCC 700122]
          Length = 230

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 108/216 (50%), Gaps = 14/216 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           R L ++GY+     DG   +G++         SS   D+  ++  L  K G +V+E  R 
Sbjct: 18  RILNENGYVTDVVHDG--QDGYD-------YASSGIYDIVILDVMLPRKNGCRVVEELR- 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
            RA    P++ ++    +   ++  DSG DD + KP    E+LA + A+ RR  +V   R
Sbjct: 68  -RARIDTPVLMLTARSEIPDKIEGLDSGADDYMTKPFSPAELLAHLRALTRRQGQVVFER 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E G + +  D RD    G+   L  +E  +   L +N G+ V+K  + S ++G+   AV
Sbjct: 127 IEAGDLSLNIDSRDLSCNGKSIALSFKEFELARILFSNPGQIVSKDTLISKVWGVESTAV 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + N VE+++S LRKK+R       +D+ R  GY ++
Sbjct: 187 DNN-VEAYVSFLRKKIRFLGSGVSIDTIRKAGYRVN 221


>gi|145220688|ref|YP_001131366.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145213174|gb|ABP42578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 228

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 16/166 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120
           +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR      L 
Sbjct: 67  LRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADADDLG 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++   E GP+R+  +     V G    LP +E  +LEYLM N G+ + + Q+   ++G 
Sbjct: 127 VADGVLEAGPVRMDVERHVVSVNGAPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221
            D   +   ++ H+    K+LR+K+  DP +     + R LGY ++
Sbjct: 186 ADYVGDTKTLDVHV----KRLRSKIESDPANPVHLVTVRGLGYKLE 227


>gi|126729668|ref|ZP_01745481.1| DNA-binding response regulator CtrA [Sagittula stellata E-37]
 gi|126709787|gb|EBA08840.1| DNA-binding response regulator CtrA [Sagittula stellata E-37]
          Length = 238

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R  +  P++ ++     Q+ +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRVARIDT--PILILTGEDDTQSKIKGFGFGADDYMTKPFHRDELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSVIRTGKVSVNLDAKTVEVTGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            +YG  DE  E  +++  I KLRKKL    G D
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSEATGDD 208


>gi|218246382|ref|YP_002371753.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218166860|gb|ACK65597.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 237

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 17/224 (7%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I  R L ++ Y+  +  DG +   +N LE +EW++ S      AI  +L+ K    LEL 
Sbjct: 15  IIQRMLNRENYLVDWVQDGAT--AWNYLE-QEWIEYSV-----AIFDWLLPKISG-LELC 65

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS 122
           + +R     +P++ ++    +Q  +   D+G DD ++KP    E+LAR+ A+ RR L + 
Sbjct: 66  QKLRQQGYSLPVLMLTAKSDIQDMVTGLDAGADDYLSKPFIKAELLARIRALQRRALHIQ 125

Query: 123 NNRAETGPIRV---FSDGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N+ + G + +    S    P  QG+    PL   E R+LEY M +  + + + Q+ + +
Sbjct: 126 PNQLQIGLLTLDYAKSSVFTPNAQGQPQNIPLTANEFRLLEYFMKHPNQTLTRDQLLAQL 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   D+A   NVV + I  LR+KL +    D +++    GY ++
Sbjct: 186 WET-DDAPISNVVSARIRLLRRKLADYGCKDLIETVHGFGYRLN 228


>gi|167585029|ref|ZP_02377417.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 225

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A +    + L   +  +++     E  + +  + R D   ++  L G  G++V
Sbjct: 3   LLLVEDNAELAHWIVNLLRGEDFAVDSVGDGERADAVLKTERYDAVLLDMRLPGISGKEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L   R+ R +  VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR  
Sbjct: 63  L--GRLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V   R   G +      R+         L RRE  ILE LM  + K V+K ++  +++ 
Sbjct: 121 GVGATRLVCGDLVYAFGTREFRCHDAPLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L DE    + ++ +I +LRK L   L    + + R LGY
Sbjct: 181 LDDEP-SADAIDIYIHRLRKHL--ALSTAEIITLRGLGY 216


>gi|266623649|ref|ZP_06116584.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288864541|gb|EFC96839.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 233

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 2/144 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  R IR +SQVP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 73  ETCRTIRKYSQVPIIMLTARSEERDELQGFNLGVDEYISKPFSPKILVARVEAILRRSNA 132

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS++  E G IR+        + G+   L  +E  +L Y + N+G  +++ +I + ++  
Sbjct: 133 VSSDLIEIGGIRIDKAAHQVTIDGQNIDLSYKEFELLTYFVENQGIALSREKILNNVWN- 191

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D   +   +++H+ KLR K+  K
Sbjct: 192 YDYFGDARTIDTHVKKLRSKMGEK 215


>gi|115350078|ref|YP_771917.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115280066|gb|ABI85583.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 225

 Score = 74.7 bits (182), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A +    + L   +  +++     E  + +  + R D   ++  L G  G++V
Sbjct: 3   LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R+ R +  VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR  
Sbjct: 63  L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+  +   G +      R+      V  L RRE  ILE LM  + K V+K ++  +++ 
Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCGDAVLALRRREHVILETLMLQQNKTVSKARLMDSVFA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L DE    + ++ +I +LRK L        + + R LGY
Sbjct: 181 LDDEP-SADAIDIYIHRLRKHLAGST--TEIITLRGLGY 216


>gi|289547930|ref|YP_003472918.1| transcriptional regulator [Thermocrinis albus DSM 14484]
 gi|289181547|gb|ADC88791.1| two component transcriptional regulator, winged helix family
           [Thermocrinis albus DSM 14484]
          Length = 214

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 109/201 (54%), Gaps = 8/201 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
           +L++D  L+ +       ++G +++  ++  E ++ L+ S   DV  ++  +    GE+V
Sbjct: 4   LLVEDDHLLGESVKEFLKENGCTVDWVWDPREVKDLLEVSIY-DVIILDLMMPHLSGEEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+   I +   +VP++ ++    L+     F+ G DD + KP    E+L R+ A+ RR K
Sbjct: 63  LK--EIRKKDQKVPVLVLTAKGRLEDKKVCFNLGADDYLTKPFEPEELLLRLKALVRR-K 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + + + E G ++V  +     +  +V  L R+E  +L+YL+ NRG+ V+  ++ + ++G 
Sbjct: 120 LPSKQVEIGRLKVDLEEEKVWLDSKVLLLSRKEWLLLKYLVENRGRCVSSEELLNYVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKL 201
            DE V E VV +HI  LRK L
Sbjct: 179 -DEPVGEEVVRAHIKNLRKIL 198


>gi|83951898|ref|ZP_00960630.1| DNA-binding response regulator CtrA [Roseovarius nubinhibens ISM]
 gi|83836904|gb|EAP76201.1| DNA-binding response regulator CtrA [Roseovarius nubinhibens ISM]
          Length = 233

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S        +  F  G DD + KP H  E++AR+ AI 
Sbjct: 54  GHEVLRQLRLARI--ETPILILSGSDDTDNKIKGFGFGADDYLTKPFHRDELVARIHAII 111

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG I V  D +  +V G+   L  +E ++LE L   +G  + K    +
Sbjct: 112 RRSKGHSQSVIRTGEINVNLDAKTVDVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 171

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            +YG  DE  E  +++  I KLRKKL    G D
Sbjct: 172 HLYGGMDEP-ELKIIDVFICKLRKKLSQATGGD 203


>gi|269123509|ref|YP_003306086.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
 gi|268314835|gb|ACZ01209.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
          Length = 224

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S VP+I ++    +   +  FD G DD + KP  + E++ARV A+ RR  
Sbjct: 62  FEVCKRIREDSDVPIIFLTAKDQITDKVISFDYGADDYITKPFSNEELIARVKALLRRST 121

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + N + E      +R+     +    GE+  L ++E  +L+YL+ N+G  + +  I   +
Sbjct: 122 LKNKKKEDFIFEDLRISYTAHEVYRGGELIQLSKKEFELLDYLVLNKGIVLGRDSILEEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G FD+    N+++ +I  LR K+        + +KR +G+
Sbjct: 182 WG-FDQIGNNNILDLYIKYLRDKIDKPYLRKFIQTKRGIGF 221


>gi|254437616|ref|ZP_05051110.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198253062|gb|EDY77376.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 221

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
           ++L++D   + +   +  G DG +++    +        +   D+  ++  L  G G   
Sbjct: 3   YLLVEDNLELANAICSRIGLDGHTVDHAARMADAIAFAQTGEYDLILLDIMLPDGDGRSF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L+  R   A +  P+I ++    +   +   D G DD V KP  H E+ AR  A+ RR  
Sbjct: 63  LKQHRA--AKNDTPVIVLTARSEVSDRISLLDLGADDYVTKPFDHAELQARCRAVLRRKA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    + G +     G    V+G V  L  RE R+LE LM  +G+   K ++   +Y 
Sbjct: 121 GASQTTIKVGDVEFDPVGGHLTVKGNVINLRNRELRLLEILMNAKGQVFHKQKLVDRLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V EN VE ++ +LR+ L        + + R LGY +D +
Sbjct: 181 -YDDDVSENAVEVYVGRLRRHLEGSAV--QITTLRGLGYRLDHD 221


>gi|241666518|ref|YP_002984602.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240861975|gb|ACS59640.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 224

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  +P+I +    +P+I I+    +   +   ++G DD + KP    E+LAR+ A+ 
Sbjct: 57  GDGLELIPKIRKKGLTLPIIVITAKGEVPDRITGLETGADDYLAKPFVFDELLARLRAVM 116

Query: 117 RRLKVSNNRAETGPIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRV 168
           RR       +ET    + S GR   DP      V G    +PRRE  +LE LM   G+ V
Sbjct: 117 RR-------SETLRPALISIGRLSFDPTYCDIIVSGLRLEMPRREALVLECLMRRAGRMV 169

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +  +  A++G FD+ ++ N ++SHIS+LR+KL        ++  R +GY
Sbjct: 170 PRPALMEAVFG-FDDEIQSNALDSHISRLRRKLAASQAGVVINVIRGVGY 218


>gi|218659866|ref|ZP_03515796.1| two-component response regulator protein [Rhizobium etli IE4771]
          Length = 223

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    +++    GP+R+        V G    L
Sbjct: 91  IDAGADDYVTKPFHVEEVLARIRALIRRAAGHASSEIICGPVRLDIKSSKATVNGTALKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + +LRK    K+G D
Sbjct: 151 TSHEYRLLAYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY I
Sbjct: 205 LIETVRGLGYRI 216


>gi|296138387|ref|YP_003645630.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296026521|gb|ADG77291.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 229

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 24/212 (11%)

Query: 27  EGFNSLEFEEWLQS-----SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           EGF +    +  ++     SA  D+  ++  L G      ++ + +RA S VP+I ++  
Sbjct: 24  EGFETTVVTDGAEALRHFDSAGADIVLLDLMLPGMSGT--DVCKQLRARSSVPVIMVTAR 81

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-------VSNNRAETGPIRVF 134
            S    +   + G DD V KP   RE++AR+ A+ RR         + +   E GP+R+ 
Sbjct: 82  DSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADTAGGEGLDDGVLEGGPVRMD 141

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            +     V GE   LP +E  +LEYL+ N G+ + + Q+   ++G  D   +   ++ H+
Sbjct: 142 VERHVVTVAGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV 200

Query: 195 SKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
               K+LR+K+  DP + K     R LGY ++
Sbjct: 201 ----KRLRSKIEADPANPKHLVTVRGLGYKLE 228


>gi|325292348|ref|YP_004278212.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325060201|gb|ADY63892.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 223

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LARV A+ RR    +++    GP+++ +      V G    L
Sbjct: 91  IDAGADDYVTKPFHVEEVLARVRALIRRAAGHASSELVCGPVKLDTKSSKATVNGVTLKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + +LRK    KLG D
Sbjct: 151 TSHEFRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KLGVD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY +
Sbjct: 205 LIETIRGLGYRM 216


>gi|116255736|ref|YP_771569.1| putative two-component response regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115260384|emb|CAK03488.1| putative two-component response regulator [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 224

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  +P+I +    +P+I I+    +   +   ++G DD + KP    E+LAR+ A+ 
Sbjct: 57  GDGLELIPKIRKKGLTLPIIVITAKGEVPDRITGLETGADDYLAKPFVFDELLARLRAVM 116

Query: 117 RRLKVSNNRAETGPIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRV 168
           RR       +ET    + S GR   DP      V G    +PRRE  +LE LM   G+ V
Sbjct: 117 RR-------SETLRPALISIGRLSFDPTYCDIIVSGLRLEMPRREALVLECLMRRAGRMV 169

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +  +  A++G FD+ ++ N ++SHIS+LR+KL        ++  R +GY
Sbjct: 170 PRPALMEAVFG-FDDEIQSNALDSHISRLRRKLAASQAGVVINVIRGVGY 218


>gi|111019061|ref|YP_702033.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226361154|ref|YP_002778932.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
 gi|110818591|gb|ABG93875.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226239639|dbj|BAH49987.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
          Length = 229

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 17/167 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121
           +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR     L V
Sbjct: 67  LRSRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVDSELDV 126

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + A  E GP+R+  +    +V GE   LP +E  +LEYL+ N G+ + + Q+   ++G
Sbjct: 127 AQDSAVLEAGPVRMDVERHVVQVNGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
             D   +   ++ H+    K+LR+K+  DP   +     R LGY ++
Sbjct: 187 -ADYVGDTKTLDVHV----KRLRSKIETDPAKPEHLVTVRGLGYKLE 228


>gi|16332195|ref|NP_442923.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1653824|dbj|BAA18735.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|122893699|gb|ABM67667.1| CcaR [Synechocystis sp. PCC 6803]
          Length = 234

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 4/156 (2%)

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           R+HS  +P++ ++   ++   +   D+G DD V KP+   E+ ARV A+ RR        
Sbjct: 67  RSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGCATCQPV 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E GPIR+     +     EV  L R+E  ILE L+ N  + ++++ I  +I+ L +   
Sbjct: 127 LEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWKL-ESPP 185

Query: 186 EENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           EE+ V+ H+  LR+KL++  L  D +++   +GY +
Sbjct: 186 EEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRL 221


>gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51]
 gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 5/165 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +++R  +Q+P+I ++        +  FD G DD + KP   RE+ ARV A+ RRL   
Sbjct: 62  VCKVLRKETQIPIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRRLDGE 121

Query: 123 NNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++        F+     R+  V+G+   L  +E  +L  L  N G+   + Q+  +++ 
Sbjct: 122 TSKEHLITFTGFTINQITREIMVEGKEVKLTTKEFDLLLVLAKNPGQIFTRDQLLDSVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
            FD   +   V++HI++LR K  +++GF D + + R +GY  ++N
Sbjct: 182 -FDYCGDSRTVDTHINRLRSKFDSQVGFSDFIQTVRGVGYKFEYN 225


>gi|167644991|ref|YP_001682654.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167347421|gb|ABZ70156.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 231

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 3/143 (2%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +R A    P++ +S    + T +  F  G DD + KP H  E++AR+ A+ RR 
Sbjct: 60  LDVLRTLRVAKVNTPIMILSGSAEIDTKVKTFSGGADDYMTKPFHKDEMIARIHAVVRRS 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K  + +  +TG I V  D +  EV G    L  +E ++LE L   +G  + K    + +Y
Sbjct: 120 KGHAQSVIKTGDIIVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G  DE  E  +++  I KLRKKL
Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKL 201


>gi|291562324|emb|CBL41140.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 225

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G +D + KP H  E+ AR+ ++  R+    +     G +   +  R   V G+   L
Sbjct: 91  LDAGANDYLAKPFHLAELEARIRSLTLRQFTQQDVLLSCGGLTFDTRSRTATVNGQTLTL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGF 207
            R+E  ILEYLM ++G+ V++ ++   ++   D +V+   N +  HIS LRKKLR  LG+
Sbjct: 151 TRKETGILEYLMVHQGRPVSQEELMDHVW---DNSVDSFSNSIRVHISALRKKLRAVLGY 207

Query: 208 DPVDSKRFLGY 218
           DP+ ++   GY
Sbjct: 208 DPIRNRIGEGY 218


>gi|323484985|ref|ZP_08090339.1| hypothetical protein HMPREF9474_02090 [Clostridium symbiosum
           WAL-14163]
 gi|323692815|ref|ZP_08107042.1| transcriptional regulatory protein CutR [Clostridium symbiosum
           WAL-14673]
 gi|323401727|gb|EGA94071.1| hypothetical protein HMPREF9474_02090 [Clostridium symbiosum
           WAL-14163]
 gi|323503129|gb|EGB18964.1| transcriptional regulatory protein CutR [Clostridium symbiosum
           WAL-14673]
          Length = 225

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 9/180 (5%)

Query: 43  REDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           R D+  ++  L GK G  VL   R     ++V ++  S    ++  ++  D+G +D + K
Sbjct: 44  RYDLVLLDLNLPGKDGMTVLRTLRQTDRETKVLIL--SARGEVEDKVEGLDAGANDYLAK 101

Query: 102 PIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
           P H  E+ AR+ ++  R+    +     G +   +  R   V G+   L R+E  ILEYL
Sbjct: 102 PFHLAELEARIRSLTLRQFTQQDVLLICGELTFDTRSRTAAVNGQTLTLTRKETGILEYL 161

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           M ++G+ V++ ++   ++   D +V+   N +  HIS LRKKLR  LG+DP+ ++   GY
Sbjct: 162 MVHQGRPVSQEELMDHVW---DNSVDSFSNSIRVHISALRKKLRAALGYDPIRNRIGEGY 218


>gi|153855773|ref|ZP_01996774.1| hypothetical protein DORLON_02793 [Dorea longicatena DSM 13814]
 gi|149751900|gb|EDM61831.1| hypothetical protein DORLON_02793 [Dorea longicatena DSM 13814]
          Length = 221

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 10/161 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +++P I ++        L  FD+G DD V KP   + +L R+ A+  R    NNR 
Sbjct: 65  IREKAEIPAIFLTARDEETDMLTAFDTGADDYVVKPFSMKVLLKRIEAVIGR----NNRE 120

Query: 127 E---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G I +F D +      +   L  RE ++LEYLM N+G  + K  I   ++GL  +
Sbjct: 121 KQLACGEIILFPDKKQVYKNEKEIILTAREYQLLEYLMYNQGNVLTKENILEYVWGLDGQ 180

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRF--LGYSIDW 222
            V +N V   I++LRKK+    G  P+  K    LGY ++ 
Sbjct: 181 FVVDNTVSVTINRLRKKIETDAG-SPIYLKNVFGLGYKLEC 220


>gi|86138408|ref|ZP_01056982.1| DNA-binding response regulator CtrA [Roseobacter sp. MED193]
 gi|85824933|gb|EAQ45134.1| DNA-binding response regulator CtrA [Roseobacter sp. MED193]
          Length = 239

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S        +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRMARI--ETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +  +TG I V  D +  EV  +   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSIIKTGKIAVNLDAKTVEVDSKTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            +YG  DE  E  +++  I KLRKKL    G D
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSTATGGD 208


>gi|150021392|ref|YP_001306746.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149793913|gb|ABR31361.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 218

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 5/148 (3%)

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134
           +I ++     +  L+ F+SG DD + KP    E+ AR  A+ RR  V +     G +++ 
Sbjct: 75  IIMLTALSQKKDKLEGFESGADDYIVKPFDFEELFARTKALARRKGVLDEEINLGELKIN 134

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
              R+   + ++  L + E  +L YL+ N  + V+K +I  A++G   E   EN+VE +I
Sbjct: 135 ILKREVTFKDKLINLSKTEFDLLLYLVKNSDRVVSKEEILDAVWGFSYEG-SENIVEVYI 193

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + LRKK+ +    D + + R +GY+I+W
Sbjct: 194 NYLRKKISS----DLIKTVRGIGYTINW 217


>gi|88859915|ref|ZP_01134554.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas tunicata D2]
 gi|88817909|gb|EAR27725.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas tunicata D2]
          Length = 224

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 2/152 (1%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAET 128
            +++P++ ++     Q  ++  D+G DD + KP H  E++AR  A+ RR    +N     
Sbjct: 70  QAELPILILTARDRWQDKVEGLDAGADDYLTKPFHPEELIARCNALIRRSAGQANPEMIA 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           GPIR+ +  +   +      L   E R+LEYLM N  K ++K+++   IY   D  ++ N
Sbjct: 130 GPIRINTRSQQVWLNNIEVSLTGYEYRVLEYLMVNPQKVISKSELTEHIYDQ-DFDLDSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V+E  + +LRKK+      +P+++ R  GY +
Sbjct: 189 VIEVFVLRLRKKIDPDGTLNPIETLRGRGYRL 220


>gi|303240217|ref|ZP_07326737.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592308|gb|EFL62036.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  SQVP+I ++    +   +   D+G +D + KP    E+LAR+  I +R  
Sbjct: 62  IEVCRRIRRQSQVPIIILTAKDDVSDKVMGLDTGANDYMTKPFAIEELLARMRGILKRYG 121

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N     N    G + +  D        E  PL ++E ++L YLM N G  + + +I  
Sbjct: 122 TINVPNDSNVLSAGKLTLDPDKFKVTYDNEDIPLTKKEFQLLMYLMNNEGLLITREKILE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G+ D     NV + +I  LR K+ +K G   + + R +GY  +
Sbjct: 182 NIWGI-DYMGLTNVTDVYIRYLRTKIDDKYGVKLIHTIRGMGYKFN 226


>gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
 gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
          Length = 228

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +RA   +  +P+I ++        +   D+G DD V KP    E++ARV A+ R
Sbjct: 62  IEICRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++  +  +R   G I +           E   L   E R+L+Y M + G+  ++ Q+  
Sbjct: 122 RIRPGLKEDRITVGDIEIDRVAHRVSRNNEDIHLGPTEFRLLDYFMQHPGRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  VE   V+ H+ +LRK LR   G DP+ + R  GY++
Sbjct: 182 TVWG-SDVYVEARTVDVHVGRLRKALRQSGGEDPIRTVRSAGYAL 225


>gi|254294576|ref|YP_003060599.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254043107|gb|ACT59902.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 233

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 21/198 (10%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           YI   G++GV L      E++  +   +  D+S  E        K L + RI       P
Sbjct: 28  YITDLGEEGVDLG--KVYEYDLIILDLSLPDISGYEVL------KQLRMSRI-----NTP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130
           ++ +S  P ++  +     G DD + KP +  E++AR+ AI RR   S   AE    TG 
Sbjct: 75  VLILSGNPDIEAKVKTLGYGADDYLTKPFNKDELIARITAIVRR---SKGHAESVIRTGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I V  D +  EV+ +   L  +E ++ E L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 ILVNLDAKTVEVKNQRVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKLRNKLGFD 208
           +  I KLRKKL+   G D
Sbjct: 191 DVFICKLRKKLQKATGGD 208


>gi|222149445|ref|YP_002550402.1| two component response regulator [Agrobacterium vitis S4]
 gi|221736428|gb|ACM37391.1| two component response regulator [Agrobacterium vitis S4]
          Length = 221

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 4/159 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L RI R+  +VP+I ++   SL   +   DSG DD + KP    E+ AR+ A+ RR   +
Sbjct: 63  LKRIRRSGRKVPVIILTANASLDGRVAGLDSGADDYLAKPFEMAELEARLRALIRRGHDL 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++       + + S  R   ++GEV  L  RE  +LEYL+   G  V K  +  +++G F
Sbjct: 123 ASPEIAVADLVLNSATRQFSLKGEVLSLTPREHSVLEYLILKAGSTVTKAALSQSVFG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   + + +E ++ ++RKKL    G   + + R LGY +
Sbjct: 182 DAETDPSAIEIYVHRVRKKLEG--GAVQIATLRGLGYML 218


>gi|91792162|ref|YP_561813.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91714164|gb|ABE54090.1| transcriptional regulator [Shewanella denitrificans OS217]
          Length = 224

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 3/130 (2%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           SG DD + KP    E+ AR+ A+ RR +++  N         + S+ +    QG+   L 
Sbjct: 93  SGADDYLGKPFSFDELHARLVALTRRGQLNQINANLTVAEFELDSNKKSVFYQGQAIELT 152

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           + E +ILEYL +N+ + +   QI  A+ G FD ++ +N +E+H+S +RKK +   G  PV
Sbjct: 153 KNEYKILEYLFSNQEQVLNPEQISEAVVGSFD-SLSKNTIEAHLSSIRKKAKLLGGTLPV 211

Query: 211 DSKRFLGYSI 220
            +KR  GY +
Sbjct: 212 KNKRGFGYYV 221


>gi|254442621|ref|ZP_05056097.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256929|gb|EDY81237.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 239

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 14/215 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           R L + GY+    +DG   +G+          +S   DV  ++  L G+ G  +L+  R 
Sbjct: 34  RGLKEQGYVVELAEDGE--DGYIH-------ATSQSYDVIVLDIMLPGRDGLSILKSLR- 83

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125
            ++ + VP+I ++    L   L+  + G DD + KP +  E++AR+ A++RR    S + 
Sbjct: 84  -KSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSSGKSLSM 142

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + V    R+    GE+  L  RE  +LEYLM + G+ + +TQI   ++G +D   
Sbjct: 143 MQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG-YDFDP 201

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             NVV+  + +LRKK+        +++ R  GY +
Sbjct: 202 STNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRM 236


>gi|254230838|ref|ZP_04924165.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis C]
 gi|124599897|gb|EAY58907.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis C]
          Length = 250

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 97/193 (50%), Gaps = 13/193 (6%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +    +   + A  D +  +  L+     G    ++ + +RA S VP+I ++   S
Sbjct: 27  EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 86

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138
               +   + G DD V KP   RE++AR+ A+ RR      ++S+   E+GP+R+  +  
Sbjct: 87  EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 146

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G+   LP +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ H+    
Sbjct: 147 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 201

Query: 199 KKLRNKLGFDPVD 211
           K+LR+K+  DP +
Sbjct: 202 KRLRSKIEADPAN 214


>gi|15828317|ref|NP_302580.1| two-component system response regulator [Mycobacterium leprae TN]
 gi|221230794|ref|YP_002504210.1| putative two-component system response regulator [Mycobacterium
           leprae Br4923]
 gi|1731206|sp|P54884|REGX3_MYCLE RecName: Full=Sensory transduction protein regX3
 gi|467058|gb|AAA17242.1| phoP [Mycobacterium leprae]
 gi|13094010|emb|CAC31956.1| probable two-component system response regulator [Mycobacterium
           leprae]
 gi|219933901|emb|CAR72538.1| probable two-component system response regulator [Mycobacterium
           leprae Br4923]
          Length = 198

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 15/165 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121
           +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR      ++
Sbjct: 38  LRVRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEI 97

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+   E+GP+R+  +     V G    LP +E  +LEYLM N G+ + + Q+   ++G+ 
Sbjct: 98  SDGVLESGPLRMDVERHVVSVNGYAITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGV- 156

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221
           D   +   ++ H+    K+LR+K+  DP +     + R LGY ++
Sbjct: 157 DYVGDTKTLDVHV----KRLRSKIEADPANPVHLVTVRGLGYKLE 197


>gi|298245119|ref|ZP_06968925.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297552600|gb|EFH86465.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 246

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 10/171 (5%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           EWL+   R D+  I+  L  KG  VLE+ R +RA     ++ ++D   +Q  +   +SG 
Sbjct: 39  EWLEQ--RPDLVIIDPML--KGGNVLEMCRDLRAKHDALVLVLTDSKEVQDEVRCLESGA 94

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNR-----AETGPIRVFSDGRDPEVQGEVFPLP 150
           DD + KP    ++LAR+ A+ RR + +  R        GP+RV S   +  V G++  L 
Sbjct: 95  DDYLRKPFFPAQLLARIRAVSRRARSTLERRPSSVVTVGPLRVDSLHNEVSVHGKLVRLT 154

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E ++L  L  N        QI + ++G +D   +  ++++HI  LR+K+
Sbjct: 155 PTESKLLHLLAINANDVCTANQIVTHVWG-YDGDGDACLIKAHIRHLRQKI 204


>gi|295102156|emb|CBK99701.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 225

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G +D + KP H  E+ AR+ ++  R+    +     G +   +  R   V G+   L
Sbjct: 91  LDAGANDYLAKPFHLAELEARIRSLTLRQFTQQDVLLSCGGLSFDTRSRTAAVNGQTLTL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGF 207
            R+E  ILEYLM ++G+ V++ ++   ++   D +V+   N +  HIS LRKKLR  LG+
Sbjct: 151 TRKETGILEYLMVHQGRPVSQEELMDHVW---DSSVDSFSNSIRVHISALRKKLRAVLGY 207

Query: 208 DPVDSKRFLGY 218
           DP+ ++   GY
Sbjct: 208 DPIRNRIGEGY 218


>gi|260462382|ref|ZP_05810590.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031876|gb|EEW33144.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 221

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 8/155 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R   ++P++ ++        +   D+G DD V KP H  E+LARV A+ RR    +++  
Sbjct: 68  RGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARVRALIRRAAGHASSEL 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+R+ +     +V G    L   E R+L YLM + G  V++T++   +Y   FD   
Sbjct: 128 TCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGDVVSRTELVEHLYDQDFDR-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + +LRK    K+G D +++ R +GY +
Sbjct: 186 DSNTIEVFVGRLRK----KMGIDMIETVRGMGYRM 216


>gi|114331353|ref|YP_747575.1| two component transcriptional regulator, winged helix family
           protein [Nitrosomonas eutropha C91]
 gi|114308367|gb|ABI59610.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas eutropha C91]
          Length = 228

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+++         G  ++  N+ E   +L +  R + + I+  L GK    L
Sbjct: 3   ILVIEDEFLLQNQIRQQLEAAGYMVDTCNNGEEGLFLATEYRLNAAIIDIGLSGKSG--L 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R   S +P++ ++   S Q  +   ++G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVIKALRQRGSLLPILILTARSSWQDKVRGLETGADDYLTKPFQMEELQARVKALLRRAN 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     E GPI V    +   + G    L   E R+LE L+ +RG+ ++K  +  A+Y 
Sbjct: 121 GIPQTLLECGPIAVDMTAQQVSINGVNIELTSFEYRLLEELVRHRGEVLSKQILADALYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  I +LR+KL       P+++ R  GY
Sbjct: 181 -HDEDRDSNVLEVMIGRLRRKLDPAGTLKPIETMRGRGY 218


>gi|239820932|ref|YP_002948117.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239805785|gb|ACS22851.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 224

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 4/162 (2%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA  S +P++ ++ + +LQ  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LDVLRRLRARKSTMPVLMLTAFDTLQDRVRGLDLGADDYLAKPFDLPELEARVRALLRRS 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E G +R  + GR      +   L  RE  +LE LM   G+ V K Q+ + +YG
Sbjct: 120 TNSTPYLEHGLLRFDTVGRRVFYDKKPLDLSPRELAVLELLMMREGRVVGKEQMVNHLYG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             DE V +N +E ++ +LRKKL   LG + + + R +GY +D
Sbjct: 180 WGDE-VGDNAIEVNVYRLRKKL-EPLGCE-IRTVRGMGYLMD 218


>gi|210621111|ref|ZP_03292474.1| hypothetical protein CLOHIR_00417 [Clostridium hiranonis DSM 13275]
 gi|210154932|gb|EEA85938.1| hypothetical protein CLOHIR_00417 [Clostridium hiranonis DSM 13275]
          Length = 224

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 19/159 (11%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVSN 123
            P++ ++   +L   ++ F +G +D + KP +  E++ARV AI R          L+  +
Sbjct: 72  TPVLILTAKEALDDKVEAFQTGANDYLTKPFYMEELVARVYAILRTNGKLTEKTGLQFKD 131

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              +T   RVF       +  E   L  ++  +LEY + NRG  + K QI+  I+G+  +
Sbjct: 132 MYIDTSEKRVF-------IGDEEITLQNKQYNLLEYFVMNRGAILLKEQIYDRIWGIDSD 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           A  E +VE ++S LRKKL +K G+D  + +KR +GY +D
Sbjct: 185 ATIE-IVEVYVSNLRKKL-SKFGYDKYIKTKRKVGYILD 221


>gi|119475918|ref|ZP_01616270.1| response regulator [marine gamma proteobacterium HTCC2143]
 gi|119450545|gb|EAW31779.1| response regulator [marine gamma proteobacterium HTCC2143]
          Length = 221

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 7/157 (4%)

Query: 67  IRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +RA+  V P++ ++    L   +   D G DD ++KP   +E++AR+ A+ RR+  S + 
Sbjct: 66  LRANKIVTPMLILTARDDLSDKITALDGGADDYLSKPFEIKELMARIRALGRRMNSSISS 125

Query: 126 AET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             T G + + S     EV     PL RRE  +L+ LM N G+   K  + + +Y  + E 
Sbjct: 126 VITAGRVSLDSANHHVEVDAIETPLSRREYTVLKALMENVGRIQTKAALENKLYS-WGEE 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  N +E HIS LRKK+    GF  + + R +GY+ID
Sbjct: 185 ISSNAIEVHISNLRKKMPE--GF--IKTVRGVGYTID 217


>gi|260427756|ref|ZP_05781735.1| cell cycle transcriptional regulator CtrA [Citreicella sp. SE45]
 gi|260422248|gb|EEX15499.1| cell cycle transcriptional regulator CtrA [Citreicella sp. SE45]
          Length = 238

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R ++  P++ +S     +  +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLSRINT--PILILSGADDTENKIKGFGFGADDYLTKPFHRDELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG I V  D +  EV G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSVIRTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL    G
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSEATG 206


>gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 226

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 8/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQIRAKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRQAA 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S+       E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 SDEPDGGALEAGPVRMDVDRHKVTVDGRPVELPLKEFELLEMLLRNSGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+    G  PV   + R LGY  +
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPGT-PVHLVTVRGLGYKFE 225


>gi|159185258|ref|NP_355482.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159140519|gb|AAK88267.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 213

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 2/165 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE +  +  + R+ + VP++ ++   ++   +D  D+G DD + KP    E+LAR+ A++
Sbjct: 46  GEGLNLVASLRRSKNSVPILVLTALGNVDHRVDGLDAGADDYLAKPFAIEELLARLRALH 105

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   +++     G + +     +  V G    L RRE  +LE LM    + V ++ +  
Sbjct: 106 RRGPSLADKYTRFGNLGIDPRSNEVSVAGSSIELRRREYLVLEALMRRPNRIVTRSSLIE 165

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A+Y L DE +E N +++HIS++RKKL        + + R +GY +
Sbjct: 166 AVYTLDDE-IESNALDAHISRIRKKLAQAEATVEIRAVRNIGYLV 209


>gi|108797641|ref|YP_637838.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866728|ref|YP_936680.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433265|ref|YP_001068956.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108768060|gb|ABG06782.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692817|gb|ABL89890.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126233065|gb|ABN96465.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 228

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 19/209 (9%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +    +   + A  D +  +  L+     G    ++ + +RA S VP+I ++   S
Sbjct: 24  EGFETTVVADGPSALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNRAETGPIRVFSDG 137
               +   + G DD V KP   RE++AR+ A+ RR        V +   E GP+R+  + 
Sbjct: 84  EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGTDVDDPGVPDGVLEAGPVRMDVER 143

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
               V G+   LP +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ H+   
Sbjct: 144 HVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV--- 199

Query: 198 RKKLRNKLGFDPVD-----SKRFLGYSID 221
            K+LR+K+  DP +     + R LGY ++
Sbjct: 200 -KRLRSKIEADPANPVHLVTVRGLGYKLE 227


>gi|257783900|ref|YP_003179117.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257472407|gb|ACV50526.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 226

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R +R+ HS+  ++ +S   S+   +   D+G DD + KP    E+ AR+  + RR 
Sbjct: 60  LDLLRTLRSEHSETKVLILSARSSVSDRIVGLDAGADDYLIKPFAFGELEARIRTLLRRE 119

Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    + T G +R  +  R   V      L ++E  ILEYLM N G  V+  ++ +  +
Sbjct: 120 YIHGEASLTLGELRFDTTARQVFVGDAQVNLTKKELAILEYLMRNAGAVVSSEELMAHAW 179

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              D  V+   N V  HI  +RKKLR  LG+DP+ +K   GY 
Sbjct: 180 ---DSNVDLFSNSVRVHIFSIRKKLREALGYDPISNKVGEGYC 219


>gi|298491165|ref|YP_003721342.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233083|gb|ADI64219.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 229

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 5/176 (2%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           DV  ++  L GK G  +L+  R  RA   +P+I ++    L   L+  + G DD ++KP 
Sbjct: 46  DVIVLDIMLPGKDGLAILKSLR--RAGRNLPVILLTARNELDDRLEGLNLGADDYLSKPF 103

Query: 104 HHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
              E++AR+ A+ RR+     N    G + +    R+     ++  L  RE  +LEYLM 
Sbjct: 104 FVEELIARIHAVIRRISGERQNILRVGSLALDRITREVTCNYQLVELTTREFNLLEYLMR 163

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + G+   +TQI   ++G +D     N+V+  + +LRKK+    G   +DS R +GY
Sbjct: 164 SPGRVFTRTQILEHVWG-YDFNPNTNLVDVCVQRLRKKIEKVAGDSWIDSVRSVGY 218


>gi|171316878|ref|ZP_02906087.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171097959|gb|EDT42777.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 225

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A +    + L   +  +++     E  + +  + R D   ++  L G  G++V
Sbjct: 3   LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R+ R    VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR  
Sbjct: 63  L--ARLRRRSDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+  +   G +      R+      V  L RRE  ILE LM  + K V+K ++  +++ 
Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCSDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L D+    + ++ +I +LRK L        + + R LGY
Sbjct: 181 LDDDP-SADAIDIYIHRLRKHLVGSTA--EIITLRGLGY 216


>gi|78047865|ref|YP_364040.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|121593755|ref|YP_985651.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|78036295|emb|CAJ23986.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|120605835|gb|ABM41575.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 222

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 15/225 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G +A     G+S++   + +  E +   A E   A+   L       +E
Sbjct: 4   LLVEDDELIGKGIVAGLRKHGISVQHVLTAQDAETVH--AEETFHALVLDLGLPDRDGME 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA   Q+P++ ++   +++  L     G DD + KP   RE+ AR+ A+ RR   
Sbjct: 62  LLASMRAVEPQLPVLILTARDAIEHRLKGLHDGADDYMVKPFDLRELAARLHALVRR--- 118

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  RA      GP+R+  +      QGE   L RRE  +L +L    G+ V    +   +
Sbjct: 119 TQGRAAQVISAGPLRLEPESGLAWFQGEAVTLSRREVDLLAHLANADGRWVPPDMLNERL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           YGL +E +  N +  HI  +R+    KLG + +++ R LGY + W
Sbjct: 179 YGLGEE-IGSNALNVHIHNIRR----KLGAEAIETVRGLGYRLGW 218


>gi|158425609|ref|YP_001526901.1| two-component response regulator [Azorhizobium caulinodans ORS 571]
 gi|158332498|dbj|BAF89983.1| two-component response regulator [Azorhizobium caulinodans ORS 571]
          Length = 224

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 3/132 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFP 148
            D+G DD + KP    E++ARV A+ RR ++  S+       +R  +  R   ++     
Sbjct: 91  LDAGADDYLAKPFEPVELIARVRAVMRRAQLDQSDGVVTVANLRFCTAARTAYIEDTSLI 150

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           LPRRE  +LE L+   G+ V +  + +A YG FD+ ++ N +++H+S+LRK+LR      
Sbjct: 151 LPRRELALLEALIRRVGQVVLRETLENAAYG-FDDEIQSNAIDAHLSRLRKRLREHNCQA 209

Query: 209 PVDSKRFLGYSI 220
            +   R LGY +
Sbjct: 210 QIRPLRGLGYML 221


>gi|126736445|ref|ZP_01752186.1| DNA-binding response regulator CtrA [Roseobacter sp. CCS2]
 gi|126713983|gb|EBA10853.1| DNA-binding response regulator CtrA [Roseobacter sp. CCS2]
          Length = 237

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R  +  P++ +S     ++ L  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLSRIDT--PILILSGDDGTESKLKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +  +TG I V  D +  EV+G    L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSIIKTGQIAVNLDAKTVEVEGSTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|311106334|ref|YP_003979187.1| transcriptional regulator QseB 2 [Achromobacter xylosoxidans A8]
 gi|310761023|gb|ADP16472.1| transcriptional regulatory protein QseB 2 [Achromobacter
           xylosoxidans A8]
          Length = 222

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 109/229 (47%), Gaps = 21/229 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---E 58
            +L++D  L+  G +A     G+   G         +++ A +  ++  A ++  G    
Sbjct: 3   VLLVEDDELIGKGIVA-----GLRAHGIMVQHVCTAVEAEAAQTGNSFNALVLDLGLPDR 57

Query: 59  KVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             +EL  ++RA    +P++ +S   +++  +     G DD + KP   RE+ AR+ A+ R
Sbjct: 58  DGMELLSVVRAIEPCLPVLILSARDAIEHRIAGLHQGADDYMTKPFDLRELAARLHALVR 117

Query: 118 RLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   +  RA      GP+R+  +     ++G+   L RRE  +L +L     + +A   +
Sbjct: 118 R---TQGRAAQIIAAGPLRLEPESGLAWLEGQAISLSRREVDLLAHLATADARWIAPDLL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              +YGL +E V  N +  HI  LR+    KLG + +++ R LGY + W
Sbjct: 175 SERLYGLGEE-VSSNALNVHIHNLRR----KLGAEVIETSRGLGYRLGW 218


>gi|315499320|ref|YP_004088124.1| two component transcriptional regulator phob, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315417332|gb|ADU13973.1| two component transcriptional regulator PhoB, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 231

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +RA ++   +P++ ++        +   D+G DD V KP    E++AR+ A+ R
Sbjct: 64  IEVTRRLRAQTETRNLPIVMLTARSEETDRIRGLDTGADDYVIKPFSMVELVARIRAVLR 123

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++  +S +R   G I +       +  G    L   E ++L+YLM +  +  ++ Q+  
Sbjct: 124 RIRPGLSEDRVTFGEIVIDRLSHRVQRSGRDVHLGPTEYKLLDYLMQHPKRVFSREQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++G  D  VE   V+ HI +LRK L     +DP+ + R  GYS+D
Sbjct: 184 AVWG-NDVYVEARTVDVHIGRLRKALNADTDYDPIRTVRSAGYSLD 228


>gi|294011554|ref|YP_003545014.1| OmpR-family two-component system response regulator [Sphingobium
           japonicum UT26S]
 gi|307294329|ref|ZP_07574173.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|292674884|dbj|BAI96402.1| OmpR-family two-component system response regulator [Sphingobium
           japonicum UT26S]
 gi|306880480|gb|EFN11697.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 235

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L ++  A  Q P++ +S    + + +  F  G DD V KP H  E++AR+ A+ RR K  
Sbjct: 63  LKKLRAAKVQTPVLILSGVAEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +   TG + V  D +  EV G    L  +E  +LE L   +G  + K    + +YG  
Sbjct: 123 SQSVIRTGKLAVNLDAKTVEVDGNRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE  E  +++  I KLRKKL
Sbjct: 183 DEP-ELKIIDVFICKLRKKL 201


>gi|163731900|ref|ZP_02139347.1| transcriptional regulator CtrA [Roseobacter litoralis Och 149]
 gi|161395354|gb|EDQ19676.1| transcriptional regulator CtrA [Roseobacter litoralis Och 149]
          Length = 239

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     +  +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLARI--ETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +  ETG I V  D +   V  +   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSVIETGLISVNLDAKTVSVDNKTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            +YG  DE  E  +++  I KLRKKL N
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSN 203


>gi|311029649|ref|ZP_07707739.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 225

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 14/213 (6%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY     +DGV  E  N L       S     +  I+  +  K     EL + IR 
Sbjct: 21  LKKEGYTVFEANDGV--EATNIL-------SQRTVHLCIIDVMMPNKNG--WELCKEIRE 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAET 128
              +P++ ++     +  +  F  G DD + KP    E++ RV A+ RR K+ + N+   
Sbjct: 70  LYDLPILMVTAKGESEDKVKGFQQGTDDYIVKPFDTHELIMRVKALLRRYKINTTNKVTI 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + + ++  +  +  E    P +E ++L  L ++ G+  ++ Q+   I+G   E  +  
Sbjct: 130 GNVVIDANSMEVTINHEPIIFPLKEFQLLFKLASHPGQVFSRDQLIEEIWGSDFEGFDRT 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            V+SHI K+RKKL  ++ FD + + R LGY ++
Sbjct: 190 -VDSHIKKIRKKLNQQMAFD-ILTIRGLGYRLE 220


>gi|217976623|ref|YP_002360770.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217501999|gb|ACK49408.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 236

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 8/130 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD+G DD V KP H  E+LAR+ A+ RR    +++    GP+     G    V+G+   L
Sbjct: 91  FDAGADDYVTKPFHIEELLARLRALMRRSAGHASSVFSCGPVSFDERGGKVSVEGQPVKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM ++GK V++ +I   +Y   FD   + N +E  + +LRK    KLG D
Sbjct: 151 TSHEYRLLGYLMHHQGKIVSRAEIVEHLYDQDFDR--DSNTIEVFVGRLRK----KLGVD 204

Query: 209 PVDSKRFLGY 218
            + + R LGY
Sbjct: 205 VIHTMRGLGY 214


>gi|110679831|ref|YP_682838.1| transcriptional regulator CtrA [Roseobacter denitrificans OCh 114]
 gi|109455947|gb|ABG32152.1| transcriptional regulator CtrA [Roseobacter denitrificans OCh 114]
          Length = 239

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     +  +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLARI--ETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +  ETG I V  D +   V  +   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSVIETGLISVNLDAKTVSVDNKTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            +YG  DE  E  +++  I KLRKKL N
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSN 203


>gi|13476381|ref|NP_107951.1| two-component system, regulatory protein [Mesorhizobium loti
           MAFF303099]
 gi|14027142|dbj|BAB54096.1| two-component system, regulatory protein [Mesorhizobium loti
           MAFF303099]
          Length = 221

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 8/155 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R   ++P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR    +++  
Sbjct: 68  RGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAAGHASSEL 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+R+ +     +V G    L   E R+L YLM + G+ V++T++   +Y   FD   
Sbjct: 128 TCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYDQDFDR-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + +LRK    K+G D +++ R +GY +
Sbjct: 186 DSNTIEVFVGRLRK----KMGIDMIETVRGMGYRM 216


>gi|229825510|ref|ZP_04451579.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
           49176]
 gi|229790073|gb|EEP26187.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
           49176]
          Length = 223

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 80/144 (55%), Gaps = 2/144 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           ++ R IR HS VP+I ++     +  L  F+ GVD+ V+KP   + ++ARV AI RR   
Sbjct: 65  QVCREIRRHSTVPIIMLTAKSDEKDELQGFELGVDEYVSKPFSPKILMARVEAILRRSGA 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS++  E G I++     +  + G    L  +E  +L Y M N+G  +++ +I + ++  
Sbjct: 125 VSDDCLEAGGIKIDRASHEVIIDGSPVDLSVKEFELLLYFMTNKGIALSREKILNNVWN- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D   +   +++H+ KLR K+ +K
Sbjct: 184 YDYFGDARTIDTHVKKLRAKMGDK 207


>gi|163797997|ref|ZP_02191938.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
 gi|159176718|gb|EDP61290.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
          Length = 223

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D   V +  +A F   G +++   S    E   +    D+  ++  L  G G   
Sbjct: 3   ILLVEDTEDVAEAVVATFTRHGHAIDHAPSCAAAEDALAVQEYDLVILDLMLPDGSG--- 59

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE  R +RA  + +P++ ++    +   +   D+G DD + KP   RE+ AR  A+ RR 
Sbjct: 60  LETLRALRAARRTMPVLVLTARLDVDDRVAALDNGADDYLMKPFDLRELEARARALIRR- 118

Query: 120 KVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             S+ R+   E G + + + GR   V G+   L RRE  +LE L+ NRG+ ++K ++F  
Sbjct: 119 -QSDERSGVIEYGNLTLDAAGRTAAVAGQPLALTRREFGLLEALLVNRGRVMSKERLFDR 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   +  V  N VE +I++LR+KL        + + R LGY I+ +
Sbjct: 178 LFSFDETEVGINAVELYIARLRRKL--AASQVSIRTLRGLGYQIEKH 222


>gi|114762503|ref|ZP_01441947.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Pelagibaca bermudensis HTCC2601]
 gi|114544758|gb|EAU47763.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Roseovarius sp. HTCC2601]
          Length = 219

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPI 131
            P+I ++    +   +D  ++G DD + KP    E+ AR+ ++ RR   + N   T GP+
Sbjct: 73  TPVIILTALDQVSDRIDGLNAGADDYLVKPFDLSELSARIGSVARRYSGNPNPILTHGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    R     G   PL  RE  + E  +A  G+ ++K Q+   +Y  FD  VE N +E
Sbjct: 133 DIDLAARSVHRDGRHVPLTAREWALFEAFLARPGQLLSKAQLEEKLYA-FDAEVESNTIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            H+S+LRK    KLG   ++++R +GY +
Sbjct: 192 VHVSRLRK----KLGSATIETERGMGYRL 216


>gi|126172825|ref|YP_001048974.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|153002255|ref|YP_001367936.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|217974842|ref|YP_002359593.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304410933|ref|ZP_07392550.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307304896|ref|ZP_07584646.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125996030|gb|ABN60105.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151366873|gb|ABS09873.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|217499977|gb|ACK48170.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304350830|gb|EFM15231.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306912298|gb|EFN42722.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
          Length = 224

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 9/150 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128
            P+I ++        ++ F++G DD + KP H +E+LAR+ A+    + RL  S+ +   
Sbjct: 73  TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRLNTSSKQLSY 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +    +  +V  ++F L   E R+L+  + +  K ++KTQ+   +Y  FD+  E N
Sbjct: 133 GGVILDEAEQTVKVADQLFELTAMEFRLLKIFLMSPKKLLSKTQLTDKLYQ-FDDEKESN 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VVE +++ LRK    KLG   ++++R  GY
Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|315442360|ref|YP_004075239.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315260663|gb|ADT97404.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 228

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 16/166 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120
           +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR      + 
Sbjct: 67  LRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADTDDVG 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++   E GP+R+  +     V G    LP +E  +LEYLM N G+ + + Q+   ++G 
Sbjct: 127 VADGVLEAGPVRMDVERHVVSVNGSPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221
            D   +   ++ H+    K+LR+K+  DP +     + R LGY ++
Sbjct: 186 ADYVGDTKTLDVHV----KRLRSKIESDPANPVHLVTVRGLGYKLE 227


>gi|291522156|emb|CBK80449.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 226

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR +S+VP+I ++     +  L  FD GVD+ + KP   + ++ARV AI RR  V
Sbjct: 65  QVCREIRQYSKVPIIMLTAKSDEKDELQGFDLGVDEYITKPFSPKILVARVEAILRRSNV 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++  E G I +     +  + G+   L  +E  +L Y M+N+G  +++ +I + ++ 
Sbjct: 125 LAADDTMEAGGIELNKAAHEVLIDGKSVELSYKEFELLAYFMSNQGVALSRERILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL  K
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGAK 208


>gi|152977294|ref|YP_001376811.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026046|gb|ABS23816.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 221

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +IIR  S VP+I ++   + +  +  F+ GVDD + KP H+   + RV A+ RR   +
Sbjct: 63  ICKIIRGQSDVPIIMLTGLQNEENEIKGFELGVDDYITKPFHYAIFIKRVEAVLRR--AA 120

Query: 123 NNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   E   I  F      S      V G+   L  +E  I+  L+ NRGK ++++ + + 
Sbjct: 121 STEVENANILQFHELMLNSTAYAAYVNGDQVELTTKEFEIIYTLLQNRGKVLSRSDLLNK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G ++   +  V+++HI  LRK    KL    + + + +GY ID
Sbjct: 181 VWG-YEHYGDVRVIDTHIKNLRK----KLCIPYIKTVKGIGYKID 220


>gi|221639032|ref|YP_002525294.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|221159813|gb|ACM00793.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
          Length = 232

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R  +  P++ +S     +  +  F  G DD + KP H  E++AR+ AI 
Sbjct: 54  GHEVLRQLRLARVDT--PILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAII 111

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +   TG I V  D +  EV+G+   L  +E ++LE L   +G  + K    +
Sbjct: 112 RRSKGHAQSVIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 171

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL    G
Sbjct: 172 HLYGGMDEP-ELKIIDVFICKLRKKLAEATG 201


>gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
 gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
          Length = 239

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 90/171 (52%), Gaps = 6/171 (3%)

Query: 56  KGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +G   +E+ R +R   A + VP+I ++   +    +   ++G DD + KP   RE+LARV
Sbjct: 68  EGTSGIEVCRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARV 127

Query: 113 AAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           AA+ RR++  ++    E G + +         +G+   L   E R+L++ M + G+  ++
Sbjct: 128 AAVMRRIRPVLAGESIEVGDLALDPVAHKVTRRGKTLKLGPTEYRLLKFFMESPGRVFSR 187

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            Q+   ++G  +  +E   V+ HI +LRK +  +   DPV + R  GYS++
Sbjct: 188 NQLLDGVWG-TESDIELRTVDVHIRRLRKAIEIEGAKDPVRTVRSAGYSLE 237


>gi|160876979|ref|YP_001556295.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|160862501|gb|ABX51035.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315269182|gb|ADT96035.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 224

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 9/150 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128
            P+I ++        ++ F++G DD + KP H +E+LAR+ A+    + RL  S+ +   
Sbjct: 73  TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRLNTSSKQLSY 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +    +  +V  ++F L   E R+L+  + +  K ++KTQ+   +Y  FD+  E N
Sbjct: 133 GGVILDEAEQTVKVADQLFELTAMEFRLLKIFLMSPKKLLSKTQLTDKLYQ-FDDEKESN 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VVE +++ LRK    KLG   ++++R  GY
Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|281491496|ref|YP_003353476.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375214|gb|ADA64727.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 228

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 20/226 (8%)

Query: 14  GYIALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAF--------------LIGKG 57
            Y  L  +D  SL  +    L FE++  S+A + +SA+E F              +I K 
Sbjct: 2   SYHVLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKL 61

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + +  L R+ +  +  P+I ++    +   +   D+G DD + KP    E+LAR+  I+R
Sbjct: 62  DGLTVLRRMKKIQADTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFR 121

Query: 118 RLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   S+++  E   ++V       EV G+   L +RE  +L Y + +RG  V++  I   
Sbjct: 122 KWSNSSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDD 181

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G+ FD   +EN V++++  LR K+        +++ R +GY ++
Sbjct: 182 VWGMDFDG--QENTVDAYVRYLRAKIDLPNHKSLIETVRGIGYRLN 225


>gi|116490257|ref|YP_809801.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|118586509|ref|ZP_01543953.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290889640|ref|ZP_06552729.1| hypothetical protein AWRIB429_0119 [Oenococcus oeni AWRIB429]
 gi|116090982|gb|ABJ56136.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|118433073|gb|EAV39795.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290480637|gb|EFD89272.1| hypothetical protein AWRIB429_0119 [Oenococcus oeni AWRIB429]
          Length = 231

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE- 127
           AH + P++ ++   S+   +  F+ G DD + KP H  E+LARV A+ RR  +     E 
Sbjct: 73  AHIETPVLILTAKDSVDDKVKGFEVGADDYLTKPFHREELLARVEALLRRAGIDTEEKEI 132

Query: 128 -TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G +++    R   V  +   L  +E  IL YL  N+   + K QIF  ++GL D    
Sbjct: 133 NIGNLKIHLSNRTVTVGNQNVQLVGKEYDILVYLAKNKNIIITKDQIFDRVWGL-DSDTT 191

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +VV  +++ LR+KL +    D + + R +G+
Sbjct: 192 TSVVNIYLNNLRRKLESVGKNDLIKTLRNVGF 223


>gi|94310569|ref|YP_583779.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354421|gb|ABF08510.1| DNA-binding response regulator in two-component regulatory system
           [Cupriavidus metallidurans CH34]
          Length = 230

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR    
Sbjct: 63  LRRLRQRRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFALNELEARARALIRRSHGH 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  A E GP+R  S  R   + GE+  L  RER +LE L+   G+ V K  +   I+G+ 
Sbjct: 123 DRTALECGPLRYDSVSRAFTLHGELLQLTGRERAVLEVLLMRDGRAVNKAALSEKIFGI- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE+V  + +E ++ +LRKKL    G   V + R LGY ++
Sbjct: 182 DESVNADAIEIYVYRLRKKLEGS-GVSIV-TLRGLGYLLE 219


>gi|296117363|ref|ZP_06835953.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295976129|gb|EFG82917.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 256

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 2/157 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
           R   A    P++ +S   S Q  +  F +G DD V +P    E+ AR+ A+ RR K  S 
Sbjct: 65  RCRAARIATPILILSAQDSAQAKVKAFSTGADDYVTRPYDPMELTARMQAVIRRSKGYSE 124

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              + G +R+  D RD  V G    L  +E  ILE L+  +G  + K    + +YG  DE
Sbjct: 125 PTLQAGALRLSLDSRDVSVNGRSVHLTGKEYMILELLLLRKGMVLTKDAFLNHLYGGMDE 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E  +++  I KLRKKL+   G + + +    GY +
Sbjct: 185 P-EMKIIDVFICKLRKKLQKAGGENLITTVWGQGYML 220


>gi|306819943|ref|ZP_07453594.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551979|gb|EFM39919.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 224

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 16/183 (8%)

Query: 47  SAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106
           + I   +I K + +  L  I +  +++P+I ++    +   +   DSG DD + KP   +
Sbjct: 47  AVILDIMIPKIDGIEVLKTIRKEGNKIPVIMLTAKSEIDDRVVGLDSGADDYLTKPFASK 106

Query: 107 EILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           E+LAR+ A+ RR        +KV N         +FSD          F L  +E +++E
Sbjct: 107 ELLARLRALTRRGEQLTENIVKVGNISLNRSSFELFSDSGS-------FRLANKEYQMIE 159

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            LM N+ + +   +    I+G +D   E NVV  HIS LRKKL+       + + R +GY
Sbjct: 160 MLMVNQNQLIPTEKFMERIWG-YDSEAEINVVWVHISFLRKKLQQLKANIQIKANRNMGY 218

Query: 219 SID 221
           S++
Sbjct: 219 SLE 221


>gi|116333023|ref|YP_794550.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098370|gb|ABJ63519.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 230

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 6/171 (3%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSG 94
           E+L S    D   ++  L   GE  L+L   IR    + P++ ++   ++   L  F+ G
Sbjct: 40  EFLASQGVFDAIILDLML--PGESGLDLLLHIRNQGVKTPVLILTAKDTIADKLRGFNDG 97

Query: 95  VDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
            DD V KP H  E+LAR+ A+ +R     S++    G + + +        G    L  R
Sbjct: 98  ADDYVTKPFHREELLARMKALLKRTGHLNSSDTIALGQLEINTSKHLATFNGAPLTLKGR 157

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           E  +L YL+ N G  + K QIF+ ++G FD     +VVE ++S LRK+L++
Sbjct: 158 EFDLLAYLVGNPGTIITKEQIFNRLWG-FDSETSLSVVEVYMSNLRKELKH 207


>gi|319784560|ref|YP_004144036.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170448|gb|ADV13986.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 221

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 8/155 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R   ++P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR    +++  
Sbjct: 68  RGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAAGHASSEL 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+R+ +     +V G    L   E R+L YLM + G+ V++T++   +Y   FD   
Sbjct: 128 TCGPLRLDTKASKADVGGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYDQDFDR-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + +LRK    K+G D +++ R +GY +
Sbjct: 186 DSNTIEVFVGRLRK----KMGIDMIETVRGMGYRM 216


>gi|259416014|ref|ZP_05739934.1| cell cycle transcriptional regulator CtrA [Silicibacter sp.
           TrichCH4B]
 gi|259347453|gb|EEW59230.1| cell cycle transcriptional regulator CtrA [Silicibacter sp.
           TrichCH4B]
          Length = 239

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     +  +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLSRI--ETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +  +TG I V  D +  +V+G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSIIKTGKISVNLDAKTVDVEGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|197104317|ref|YP_002129694.1| cell cycle transcriptional regulator CtrA [Phenylobacterium
           zucineum HLK1]
 gi|196477737|gb|ACG77265.1| cell cycle transcriptional regulator CtrA [Phenylobacterium
           zucineum HLK1]
          Length = 231

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL   R+ + ++  P++ +S    ++T +  F  G DD + KP H  E++AR+ A+ 
Sbjct: 59  GMDVLRTLRVGKINT--PIMILSGTAEIETKVKTFTGGADDYMTKPFHKDELVARIHAVV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +  +TG I V  D +  EV G    L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVIKTGDITVNLDAKTVEVNGIRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|99081240|ref|YP_613394.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037520|gb|ABF64132.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 239

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     +  +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLSRI--ETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +  +TG I V  D +  +V+G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSIIKTGKISVNLDAKTVDVEGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|330828633|ref|YP_004391585.1| two-component system response regulator [Aeromonas veronii B565]
 gi|328803769|gb|AEB48968.1| Two-component system response regulator [Aeromonas veronii B565]
          Length = 228

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++ R   Q+P++ ++   +L   +   D+G DD + KP   +E+ AR+ A+ RR K  
Sbjct: 63  LRKLRREGHQLPVLILTARDALDDRVVGLDAGSDDYMVKPFALQELNARLRALVRRSKGQ 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E G I ++ + +    QGE   L   E ++L+ L++  G+ ++K Q+  ++YG +
Sbjct: 123 AQAVLEYGDILIYPESQQVTYQGEAVKLTPHEYKLLQELISQSGRVLSKDQLQQSLYG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           DE  E N VE HI  LRKK  + L    + + R +GY I
Sbjct: 182 DEGAESNAVEVHIHHLRKKFYSDL----IRNIRGVGYII 216


>gi|15672984|ref|NP_267158.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723949|gb|AAK05100.1|AE006334_6 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406546|gb|ADZ63617.1| two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 228

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 110/226 (48%), Gaps = 20/226 (8%)

Query: 14  GYIALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAF--------------LIGKG 57
            Y  L  +D  SL  +    L FE++  S+A + +SA+E F              +I K 
Sbjct: 2   SYHVLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKL 61

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + +  L R+ +     P+I ++    +   +   D+G DD + KP    E+LAR+  I+R
Sbjct: 62  DGLTVLRRMKKIQPDTPIIFLTACDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFR 121

Query: 118 RLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   S+++  E   ++V       EV G+   L +RE  +L Y + +RG  V++  I   
Sbjct: 122 KWSNSSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDD 181

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G+ FD   +EN V++++  LR K+        +++ R +GY ++
Sbjct: 182 VWGMDFDG--QENTVDAYVRYLRAKIDLPNHKSLIETVRGIGYRLN 225


>gi|331699380|ref|YP_004335619.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954069|gb|AEA27766.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 229

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 28/224 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+ A     G S         EE+ ++ A  D+  ++  L G      ++ R +R+
Sbjct: 21  LRKEGFTAAVATTGQS-------ALEEFDRNGA--DIVLLDLMLPGMSGT--DVCRSLRS 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126
            S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR       A   
Sbjct: 70  RSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGEGGAEAEGG 129

Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E GP+R+  D     V G   PLP +E  +LEYL+ N G+ + + Q+   ++G  D
Sbjct: 130 GGVLEAGPVRMDVDRHVVSVGGADVPLPLKEFDLLEYLLRNVGRVLTRGQLIDRVWG-AD 188

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
              +   ++ H+    K+LR+K+  DP     + + R LGY  D
Sbjct: 189 YVGDTKTLDVHV----KRLRSKVEVDPSVPRHLITVRGLGYKFD 228


>gi|254522399|ref|ZP_05134454.1| two-component response regulator [Stenotrophomonas sp. SKA14]
 gi|219719990|gb|EED38515.1| two-component response regulator [Stenotrophomonas sp. SKA14]
          Length = 224

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 97/206 (47%), Gaps = 22/206 (10%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPR--------IIRAHSQ-VPLIG 77
           ++L+ E ++   A     A EA L G  + VL    LP         ++R H+  VP+I 
Sbjct: 18  SALQRERYVVDLANTLALAREAALYGSHDLVLLDRTLPDGDGLGLIPVLRGHNPGVPIIV 77

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG 137
           +S    L   +   D G DD + KP    E+ AR+ A  RR        +  P+ +    
Sbjct: 78  LSALGQLPDRIAGLDEGADDYLAKPFALEELFARIRAAGRR----PGGMQVEPVSIGRLL 133

Query: 138 RDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
            DP      V G+   LPRRE R+L  L    G+ V +  I  A+YG FD+ +  N ++S
Sbjct: 134 FDPASGEATVGGQRLELPRREIRVLAALARRLGRTVLRESIEMAVYG-FDDGIHSNTLDS 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218
           H+S+LR+KL +      + + R +GY
Sbjct: 193 HVSRLRRKLADADAGVEIHAIRGVGY 218


>gi|77463175|ref|YP_352679.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462047|ref|YP_001043161.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332558049|ref|ZP_08412371.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|77387593|gb|ABA78778.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
 gi|126103711|gb|ABN76389.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|332275761|gb|EGJ21076.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 237

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 15/193 (7%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           Y    G+DG+ L      +++  L      D+S         G +VL   R+ R  +  P
Sbjct: 28  YCTDLGEDGIDLAKL--YDYDLILLDLNLPDMS---------GHEVLRQLRLARVDT--P 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133
           ++ +S     +  +  F  G DD + KP H  E++AR+ AI RR K  + +   TG I V
Sbjct: 75  ILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSKGHAQSVIRTGKILV 134

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D +  EV+G+   L  +E ++LE L   +G  + K    + +YG  DE  E  +++  
Sbjct: 135 NLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKIIDVF 193

Query: 194 ISKLRKKLRNKLG 206
           I KLRKKL    G
Sbjct: 194 ICKLRKKLAEATG 206


>gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 229

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 4/163 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR+ S  P+I I+        L  F+ G DD + KP   RE+ ARV A+ +R    
Sbjct: 69  LCREIRSFSDKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVLKRANPV 128

Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  TG I++  +GR+  V GE   L  +E  +L +L+ N+GK +++  I   ++  
Sbjct: 129 QGEELIHTGQIKINVEGREVSVGGEQINLTPKEFDLLVFLINNKGKVLSREHITRKVWD- 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D   ++  V++HI KLR+KL  K G + + +   +GY  + N
Sbjct: 188 YDYFGDQRTVDTHIKKLREKLGEKAG-NEIKTIWGVGYKFEVN 229


>gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 228

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + IR  S VP+I ++        +   + G DD V KP   RE++ARV A+ RR  
Sbjct: 61  MEIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRSS 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K +++  + G + +  + R+ +V GE   L   E  +L YL+ NRGK +++ Q+ +
Sbjct: 121 GIPEKEASSVIKQGILEIHPEAREVKVNGEEVVLTPLEFDLLLYLVTNRGKALSREQLLA 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            ++G +D   E   V++H+++LR+KL+    +
Sbjct: 181 NVWG-YDYFGEARTVDTHVTRLREKLQEAASY 211


>gi|18202894|sp|Q9F868|REGX3_MYCS2 RecName: Full=Sensory transduction protein regX3
 gi|9964001|gb|AAG09797.1|AF258346_2 response regulator RegX3 [Mycobacterium smegmatis str. MC2 155]
          Length = 228

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 27/223 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+ A    DG S          E+ +S A  D+  ++  L G      ++ + +RA
Sbjct: 21  LRKEGFEATVVGDGPS-------ALAEFERSGA--DIVLLDLMLPGMSGT--DVCKQLRA 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126
            S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +++     
Sbjct: 70  RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADNDDAGADD 129

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E GP+R+  +     V GE   LP +E  +LEYLM N G+ + + Q+   ++G  D 
Sbjct: 130 GVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADY 188

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221
             +   ++ H+    K+LR+K+  DP +     + R LGY ++
Sbjct: 189 VGDTKTLDVHV----KRLRSKIEEDPANPVHLVTVRGLGYKLE 227


>gi|328948543|ref|YP_004365880.1| transcriptional regulator [Treponema succinifaciens DSM 2489]
 gi|328448867|gb|AEB14583.1| two component transcriptional regulator, winged helix family
           [Treponema succinifaciens DSM 2489]
          Length = 233

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 34/234 (14%)

Query: 3   VLIDDRALVKD---GYIALFGDDGVSLEGFNSLEF---EEWLQSSARE--DVSAIEAFLI 54
           ++++D +L++D   GY+         L+G+ +LEF      L +  RE  D++ ++  L 
Sbjct: 5   IIVEDNSLIRDAVSGYL--------KLDGYKTLEFGGVSGVLDAVKRETCDLAILDVMLP 56

Query: 55  -GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
            G G     L + IRA S +PLI ++   S    +  F+ G DD + KP   +E++ RV 
Sbjct: 57  DGSG---FALAKEIRAASDIPLIFLTAKDSESDRILGFELGADDYICKPFSAKELVLRVH 113

Query: 114 AIYRRL-------KVSNNRAETGPIRVFSD-GRDP-EVQGEVFPLPRRERRILEYLMANR 164
           A+ RR          ++   ++G   VF D GR    V G    L   E +IL YL +N 
Sbjct: 114 ALLRRTGKSDGGKSAASGEWQSGNSAVFIDEGRHSVSVDGNPIELTSTEWKILLYLASNT 173

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G+ V++ Q+       F E   E  +++H++     LR+K+G   + + R  GY
Sbjct: 174 GQVVSREQLLGECLNYFFEG-SERTIDTHMA----NLRSKIGQQWISTVRGFGY 222


>gi|126464554|ref|YP_001045667.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332560699|ref|ZP_08415017.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|126106365|gb|ABN78895.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|332274497|gb|EGJ19813.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 219

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 9/163 (5%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+  R +RA  + +P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LDFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRY 119

Query: 120 KVSNN-RAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + R   GP+ V  +D R    +GEV  L +RE  I E L+   G  V+KTQ+   +
Sbjct: 120 AGNPSPRLALGPLEVDIADRRIDGPEGEV-TLSQREWAIFEALVKRPGSVVSKTQLEETL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  FD  VE N +E ++S+LRK    KLG D ++++R +GY +
Sbjct: 179 YA-FDAEVESNTIEVYVSRLRK----KLGRDRIETRRGMGYRL 216


>gi|300023992|ref|YP_003756603.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525813|gb|ADJ24282.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 232

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL+  R+ +  +  P++ +S    +   +     G DD + KP H  E++AR+ AI 
Sbjct: 59  GYEVLKTLRVSKVST--PILILSGLAGIDDKVRGLGFGADDYMTKPFHKDELVARIQAIV 116

Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +  ETG +RV  D +  +V G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSIIETGDLRVNLDTKTVDVNGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL+   G
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLQTATG 206


>gi|225028678|ref|ZP_03717870.1| hypothetical protein EUBHAL_02957 [Eubacterium hallii DSM 3353]
 gi|224953988|gb|EEG35197.1| hypothetical protein EUBHAL_02957 [Eubacterium hallii DSM 3353]
          Length = 225

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 76/133 (57%), Gaps = 6/133 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149
            D+G +D + KP H +E+ AR+ ++ RR  V  +       I+  +  R+   +G + PL
Sbjct: 91  LDAGANDYMEKPFHIQELEARIRSLTRRKFVQKDICLHCKDIKFDTKKREAYAKGILVPL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGF 207
            R+E  ILEYL+ N+G+ V++ ++   ++   D +++     +  H+S LRKK ++ LG+
Sbjct: 151 TRKENGILEYLLLNQGRPVSQEELIEHVW---DASIDSFSGSIRVHMSSLRKKFKSVLGY 207

Query: 208 DPVDSKRFLGYSI 220
           DP+ +K   GY +
Sbjct: 208 DPIVNKIGEGYKL 220


>gi|118470709|ref|YP_885340.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171996|gb|ABK72892.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
           MC2 155]
          Length = 225

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 27/223 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+ A    DG S          E+ +S A  D+  ++  L G      ++ + +RA
Sbjct: 18  LRKEGFEATVVGDGPS-------ALAEFERSGA--DIVLLDLMLPGMSGT--DVCKQLRA 66

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126
            S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +++     
Sbjct: 67  RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADNDDAGADD 126

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E GP+R+  +     V GE   LP +E  +LEYLM N G+ + + Q+   ++G  D 
Sbjct: 127 GVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADY 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221
             +   ++ H+    K+LR+K+  DP +     + R LGY ++
Sbjct: 186 VGDTKTLDVHV----KRLRSKIEEDPANPVHLVTVRGLGYKLE 224


>gi|110680627|ref|YP_683634.1| two-component response regulator, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456743|gb|ABG32948.1| two-component response regulator, putative [Roseobacter
           denitrificans OCh 114]
          Length = 225

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 9/149 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  LP  +R    VP+I ++    L   L   D G DD V KP+   E++AR  A+ 
Sbjct: 57  GDGMALLP-TLRRDGTVPVIVLTAREQLTDRLSGLDGGADDYVVKPVEMPELVARCRAVL 115

Query: 117 RRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR     +R+ T    G + + +      V G   PL RRE  +LE+LM   G+  A+  
Sbjct: 116 RR---PGDRSGTVLNHGDLALDTAALSVTVAGTGVPLGRREVAVLEHLMRAAGRVSARRV 172

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  A+YG FD+ V  N +E+ IS+LR+ L
Sbjct: 173 LEEAVYG-FDDEVSPNAIEASISRLRRTL 200


>gi|77465102|ref|YP_354605.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77389520|gb|ABA80704.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 219

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 9/163 (5%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+  R +RA  + +P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LDFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRY 119

Query: 120 KVSNN-RAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + R   GP+ V  +D R    +GEV  L +RE  I E L+   G  V+KTQ+   +
Sbjct: 120 AGNPSPRLALGPLEVDIADRRIDGPEGEV-TLSQREWAIFEALVKRPGSVVSKTQLEETL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  FD  VE N +E ++S+LRK    KLG D ++++R +GY +
Sbjct: 179 YA-FDAEVESNTIEVYVSRLRK----KLGRDRIETRRGMGYRL 216


>gi|146277940|ref|YP_001168099.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556181|gb|ABP70794.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 237

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R  +  P++ +S     +  +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLARVDT--PILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +   TG I V  D +  EV+G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSIIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL    G
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAEATG 206


>gi|71906069|ref|YP_283656.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71845690|gb|AAZ45186.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 223

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 4/162 (2%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +RA +SQ+P++ ++        +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLKRLRARNSQLPVLILTALDGTGDRVKGLDLGADDYMVKPFELPELEARVRALTRRS 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G +     GR  ++QG+   L  RE  +LE L++  G+ V+K Q+   + G
Sbjct: 120 AGTSPTIQCGALTYDQVGRVAQIQGQTLELSAREVGLLEVLLSRMGRLVSKDQLVDHLCG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+    G   + + R LGY ++
Sbjct: 180 -WGEEVSHNAIEVYVHRLRKKIEP--GGVKIATVRGLGYCLE 218


>gi|323342772|ref|ZP_08083004.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463884|gb|EFY09078.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 224

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S VP+I ++   S    L   + G DD + KP + + +LAR+ ++ RR    
Sbjct: 63  LAKEIRKISAVPIIVVTSRNSTMDELMSMNLGADDFITKPYNLQILLARLQSVLRRAYEK 122

Query: 123 NNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           N+ A T    V  D     V+  G+   L + E RIL YL+AN+G  V++  +   ++  
Sbjct: 123 NDNAVTVLRGVELDTPRGMVRYMGQEQELTKNELRILSYLIANKGSIVSRQDLMQYLWNT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D  V++N +  +I++LRKKL      D +++KR +GY+I  N
Sbjct: 183 -DWFVDDNTLTVNINRLRKKLEEIGIVDFIETKRGMGYTIHEN 224


>gi|264680342|ref|YP_003280252.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299532693|ref|ZP_07046081.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262210858|gb|ACY34956.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298719328|gb|EFI60297.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 239

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 19/216 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +V  G      D G +++   S E    + +    DV+ I+  L   G   L
Sbjct: 3   LLLVEDDVMVASGIKLGLSDAGYAVDWVGSAERALEVLAQEAFDVAVIDIGL--PGINGL 60

Query: 62  ELPRIIRAH----SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           EL R +R+       +P++ ++   +LQ  +   D G DD + KP    E+LAR+ A+ R
Sbjct: 61  ELTRRLRSSDVESKAMPVLILTARDALQDRVQGLDWGADDYMVKPFELPELLARLRALMR 120

Query: 118 RLKVSNNRAET-GPIRVFSDGR---------DPEVQGEVFP--LPRRERRILEYLMANRG 165
           R + + +     G I + + GR         + E +G++ P  L  RE  +LEYL+ N  
Sbjct: 121 RSQAATSAVLNFGCIELDTAGRRAGARQLPQEGETEGKLLPIDLGPREWTVLEYLLLNAP 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           K  +K ++  A+ G +D  +  N VE ++S+LR KL
Sbjct: 181 KPASKEKLLQALTG-WDREITPNAVEVYVSRLRSKL 215


>gi|120401846|ref|YP_951675.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954664|gb|ABM11669.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 228

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 16/166 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120
           +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR        
Sbjct: 67  LRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDADDAG 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   E GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   ++G 
Sbjct: 127 IGDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221
            D   +   ++ H+    K+LR+K+  DP +     + R LGY ++
Sbjct: 186 ADYVGDTKTLDVHV----KRLRSKIEADPANPVHLVTVRGLGYKLE 227


>gi|160899673|ref|YP_001565255.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365257|gb|ABX36870.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 220

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 15/223 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EK 59
           +L++D ALV  G  A     G+ L+GF         Q+ A    S  +A ++  G   E 
Sbjct: 4   LLVEDNALVASGVRA-----GLQLQGFGVDTVASAGQADAAIRSSHFDACVLDLGLPDED 58

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L L    R    QVP++ ++   ++   ++   +G DD + KP    E+ AR+ A+ RR
Sbjct: 59  GLSLLARWRGQGLQVPVLVLTARDAVSQRIEGLQTGADDYLVKPFDLHELAARLHALLRR 118

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S +  E G +R+       + QG    L RRE  +L  L+ + G+ ++  Q+  ++
Sbjct: 119 AAGRSVDWIELGEVRINPAAGHIQRQGRTVELSRREWSLLRALLQSPGRILSTEQLRDSL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG + + VE N V  H+  LR+    KLG + V++ R  GY +
Sbjct: 179 YG-YSQDVESNAVNVHVHHLRR----KLGHELVETVRGEGYRL 216


>gi|119489672|ref|ZP_01622431.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119454409|gb|EAW35558.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 226

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 103/202 (50%), Gaps = 18/202 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           RAL ++GY     D+G +  G+N       L +    D+  ++  L    +  +E+ + +
Sbjct: 18  RALTREGYAVDVADEGAT--GYN-------LATQHHYDLLILDWML--PHQSGVEMCQQL 66

Query: 68  R-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R  ++Q+P++ ++   +L   ++  D+G DD + KP   RE+LARV A+ RR     + A
Sbjct: 67  RLKNNQIPILFLTAKDTLNDRVEGLDAGADDYLVKPFELRELLARVRALLRRPPTLESPA 126

Query: 127 ETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               +++F+   D E Q     G +  L  +E ++LEY M + G+ +   QI+  ++   
Sbjct: 127 ANSRLQIFNLELDIENQLAYRNGRIIELSEKECQLLEYFMRHSGQLLTHQQIYQHLWADS 186

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D+    NV+ + I  LR+K+ +
Sbjct: 187 DQP-SSNVLAAQIRLLRRKIED 207


>gi|325568393|ref|ZP_08144760.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325158162|gb|EGC70315.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 224

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN-NRAETG 129
           Q P++ ++    L+  +  F  G DD + KP +  E+L R+ A+ +R L + N N  E  
Sbjct: 72  QTPVLILTAKDGLEDKVTGFQKGADDYLTKPFYREELLMRIKALLKRSLGLFNENTLEYN 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +       +   QGE+ P+  +E  +L Y + NR   + K QIF  I+G FD      V
Sbjct: 132 GLLCNLGTNEVSYQGELLPIQGKEFELLLYFLQNRNIILTKEQIFDRIWG-FDSETTLTV 190

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++S LRK LR + G D  + + R +GY
Sbjct: 191 VEVYMSNLRKHLR-QTGIDKEIRTLRNVGY 219


>gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
          Length = 234

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD + KP   RE+LARV A+ RR ++ 
Sbjct: 63  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQMV 122

Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + AE+         G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 123 ADAAESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP   K     R LGY ID
Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|160894924|ref|ZP_02075698.1| hypothetical protein CLOL250_02474 [Clostridium sp. L2-50]
 gi|156863355|gb|EDO56786.1| hypothetical protein CLOL250_02474 [Clostridium sp. L2-50]
          Length = 226

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G    E+ R IRA S VP+I ++     +  L  +D G DD V KP    E+ A++ +  
Sbjct: 62  GADGFEICRAIRAKSYVPIIFLTARGREEDRLYGYDLGCDDYVVKPFSMAELQAKIQSFL 121

Query: 117 RRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR K     N   + G I+++ D    E  GE   L  +E  +L+YLM ++G  V +  +
Sbjct: 122 RRSKGLWTKNQVIQVGDIKMYPDRLLVEAAGEEVRLAPKEYAMLKYLMEHKGMIVTRDDM 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G +D    + VV++H+ KLRK L
Sbjct: 182 LVRLWG-YDYDGGDRVVDNHVKKLRKAL 208


>gi|326383367|ref|ZP_08205054.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197773|gb|EGD54960.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 224

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 14/216 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R LV +G++     DG++            LQ +  E    +   ++  G    E+ R +
Sbjct: 18  RTLVAEGWVVDTATDGLT-----------GLQKALSEPFDVVVLDIMMPGRNGYEVVRDL 66

Query: 68  R-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R A    P++ ++         D FD G DD + KP     ++AR+ A+ RR        
Sbjct: 67  RRAQVWTPVLMLTAKDGEYDQADAFDFGADDYLTKPYSAVVLVARLRALARRGAPERPAV 126

Query: 127 ETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            T              +G+    L RRE  +LE+LM N+G+ V KTQI  +++ + +   
Sbjct: 127 MTAGSLSLDPSAHVVKRGDTELSLTRREFALLEFLMRNKGQAVTKTQIVDSVWDV-NYTG 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +ENVVE +IS LRK++    G   + + R +GY +D
Sbjct: 186 DENVVEVYISYLRKRIDAPFGCKSIQTVRGVGYRLD 221


>gi|146302027|ref|YP_001196618.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146156445|gb|ABQ07299.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 223

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 12/182 (6%)

Query: 45  DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D+  ++  L G  G ++++L R  + H+  P++ +S   +    +   DSG DD + KP 
Sbjct: 46  DIILMDIMLPGIDGIQLVKLMRFKKIHT--PILILSALSNTDDKVTALDSGADDYLVKPF 103

Query: 104 HHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
           H +E+++RV A+ RR K + N  ET    G + +  D        ++  L  RE ++L Y
Sbjct: 104 HFKELISRVNALTRRTKFNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLY 163

Query: 160 LMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L+ NR K +++TQI +A++G+ +D     NVV+ +IS LR K+ +   F  + + + +GY
Sbjct: 164 LLENRNKVMSRTQILTAVWGINYDNNT--NVVDVYISYLRNKIEHNHKF--IHTIKGIGY 219

Query: 219 SI 220
            +
Sbjct: 220 ML 221


>gi|33594405|ref|NP_882049.1| response regulator protein [Bordetella pertussis Tohama I]
 gi|33597124|ref|NP_884767.1| response regulator protein [Bordetella parapertussis 12822]
 gi|33600968|ref|NP_888528.1| response regulator protein [Bordetella bronchiseptica RB50]
 gi|5777378|emb|CAB53386.1| transcriptional regulatory protein, putative [Bordetella pertussis]
 gi|33564480|emb|CAE43793.1| response regulator protein [Bordetella pertussis Tohama I]
 gi|33566575|emb|CAE37832.1| response regulator protein [Bordetella parapertussis]
 gi|33575403|emb|CAE32480.1| response regulator protein [Bordetella bronchiseptica RB50]
 gi|332383816|gb|AEE68663.1| response regulator protein [Bordetella pertussis CS]
          Length = 223

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETG 129
           +QVP++ ++    L   +   D+G DD V KP    E+ ARV A+ RR    +  + E G
Sbjct: 71  NQVPVLILTARDGLDDRVAGLDAGADDYVTKPFDLPELAARVRALGRRRSGQAQPQIEVG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P+   + GR+    G    L  RE  +LE LMA  G+ V K QI +++   +D    EN 
Sbjct: 131 PLVFDTVGREVRANGTRLALSVRELSVLEMLMARSGRVVTKRQIVNSLSA-WDADFSENA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           VE ++ +LRK+L        + + R  GY +D
Sbjct: 190 VEVYVYRLRKRLEGSGA--SIQTVRGFGYMLD 219


>gi|317498542|ref|ZP_07956836.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894235|gb|EFV16423.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 226

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 92/178 (51%), Gaps = 18/178 (10%)

Query: 42  AREDVSAIEAFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLD 89
           A++   A++ F   KG  +L            E+ + IR  S+VP+I ++     Q  L 
Sbjct: 33  AQDGEEAVDTFYSTKGINLLVLDVMMPKMDGWEVVKEIRKVSKVPIIMLTAKDQEQDELL 92

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
            F+ GVD+ ++KP   + ++ARV AI RR ++    + E G I +   G    + G+   
Sbjct: 93  GFELGVDEYISKPFSPKILVARVEAILRRTVQTEGEQIEAGGIVMDVGGHHVSIDGKSIN 152

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           L  +E  +L+Y M+N+G+ + +  I + ++  +D   +   +++H+    KKLRNKLG
Sbjct: 153 LSYKEFELLQYFMSNQGRALTRESILNQVWN-YDYFGDARTIDTHV----KKLRNKLG 205


>gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 4/164 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR HS VPLI ++    +   +   DSG DD V KP    E+LAR+ A  R+ K
Sbjct: 63  IEICRKIRQHSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSK 122

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N   E      + + +  R  +   ++  L +RE  +LEYL+ N+G  + + QI   +
Sbjct: 123 QLNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTREQILENV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +    + NVV+ +I  LR K+ +      + + R +GY  +
Sbjct: 183 WG-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCE 225


>gi|310658178|ref|YP_003935899.1| DNA-binding response regulator in two-component regulatory system
           with baes [Clostridium sticklandii DSM 519]
 gi|308824956|emb|CBH20994.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Clostridium sticklandii]
          Length = 227

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 18/209 (8%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFL--------IGKGEKVLELPRIIRAHSQVPLIGI 78
           EG+N+  FE     SA   +SAI  F+        + +G   L+L + IR  S+VP+I +
Sbjct: 24  EGYNTTTFE-----SADGVLSAIREFMPDLLVLDIMMQGLDGLDLCKEIRKISEVPIIFV 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVF 134
           S        +   + G DD + KP   RE++ R+  I +R   S+   +    T  + ++
Sbjct: 79  SARSDELDRILGLELGADDYLAKPFSPRELVVRIKTILKRTTKSSEHNDEILKTKDLEIY 138

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
              R  +  G+  PL  +E  +LE+LM N    +++ QI  +I+G   +  + N V+  I
Sbjct: 139 VQRRIVKCMGQDIPLTIKEYEVLEFLMKNINLPLSREQIIESIWGYDYDGYDRN-VDDTI 197

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +LRKKL+       + +    GY ID N
Sbjct: 198 KRLRKKLKTAKSRVVIKTVWGYGYRIDDN 226


>gi|295394466|ref|ZP_06804689.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972645|gb|EFG48497.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 13/207 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58
            +L++D   + D    L G      EG++     + LQ+ A  D    +  L+     G 
Sbjct: 4   ILLVEDEESISDPLAYLLGK-----EGYDVTVAADGLQALAEFDSHGADLVLLDLMLPGA 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R +RA S+VP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR
Sbjct: 59  SGTEVCRQLRAKSKVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVMRR 118

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 + +   E G +R+  +     V+G    LP +E  +LE L+ N G+ + + Q+ 
Sbjct: 119 NTESSDIDDGVLEAGGVRIDVERHVASVRGSELALPLKEFELLEMLVRNAGRVMTRGQLI 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             I+G  D   +   ++ H+ +LR K+
Sbjct: 179 DRIWG-QDYVGDTKTLDVHVKRLRAKI 204


>gi|217077821|ref|YP_002335539.1| response regulator receiver [Thermosipho africanus TCF52B]
 gi|217037676|gb|ACJ76198.1| response regulator receiver [Thermosipho africanus TCF52B]
          Length = 217

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 6/147 (4%)

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRV 133
           +I ++     +  L+ F+SG DD V KP    E+ ARV AI RR  ++ N+  +   + +
Sbjct: 75  IIMLTALSEKKNKLEGFESGADDYVVKPFDFEELFARVKAIARRKNITLNDEIKIKDLII 134

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
               R+   +G+   L + E  +L YL+ N G+ V+K +I  A++G+  E   EN VE +
Sbjct: 135 NISKREVIFKGKPINLSKTEFDLLAYLVKNAGRVVSKEEILDAVWGISYEG-SENTVEVY 193

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+ LRKKL +    D + + R +GY+I
Sbjct: 194 INYLRKKLSS----DIIKTVRGIGYTI 216


>gi|77460461|ref|YP_349968.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384464|gb|ABA75977.1| two-component system, transcriptional regulatory protein PhoP
           [Pseudomonas fluorescens Pf0-1]
          Length = 225

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLQTRLTESGHVVESVANAEEALYQTGQFNFDLAVIDLGL--PGMSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R+  +  P++ ++   + Q  ++   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRSGGKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVPKDRLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLEGPAGFKPIDTVRGLGY 218


>gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 4/164 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR HS VPLI ++    +   +   DSG DD V KP    E+LAR+ A  R+ K
Sbjct: 63  IEICRKIRQHSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSK 122

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N   E      + + +  R  +   ++  L +RE  +LEYL+ N+G  + + QI   +
Sbjct: 123 QLNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +    + NVV+ +I  LR K+ +      + + R +GY  +
Sbjct: 183 WG-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCE 225


>gi|226305111|ref|YP_002765069.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229490687|ref|ZP_04384525.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226184226|dbj|BAH32330.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229322507|gb|EEN88290.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 229

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 20/210 (9%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +    +   + A  D S  +  L+     G    ++ + +R+ S VP+I ++   S
Sbjct: 24  EGFETTIVNDGPSALAEFDRSGADIVLLDLMLPGMSGTDVCKALRSRSGVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFSD 136
               +   + G DD V KP   RE++AR+ A+ RR       L   N   E GP+R+  +
Sbjct: 84  EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVENEADLASDNGVLEAGPVRMDVE 143

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
               +V G    LP +E  +LEYL+ N G+ + + Q+   ++G  D   +   ++ H+  
Sbjct: 144 RHVVQVAGNPVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV-- 200

Query: 197 LRKKLRNKLGFDPVDSK-----RFLGYSID 221
             K+LR+K+  DP   +     R LGY ++
Sbjct: 201 --KRLRSKIESDPAKPEHLVTVRGLGYKLE 228


>gi|167765588|ref|ZP_02437652.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
 gi|167712773|gb|EDS23352.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
          Length = 226

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 81/146 (55%), Gaps = 6/146 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E+ + IR  S+VP+I ++     Q  L  F+ GVD+ ++KP   + ++ARV AI RR ++
Sbjct: 65  EVVKEIRKVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRTVQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E G I +   G    + G+   L  +E  +L+Y M+N+G+ + +  I + ++  
Sbjct: 125 TEGEQIEAGGIVMDVGGHHVSIDGKSINLSYKEFELLQYFMSNQGRALTRESILNQVWN- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG 206
           +D   +   +++H+    KKLRNKLG
Sbjct: 184 YDYFGDARTIDTHV----KKLRNKLG 205


>gi|320106273|ref|YP_004181863.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319924794|gb|ADV81869.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 227

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 15/225 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61
           +L++D   + +  +    + G++++        + L   A  D   ++  L GK G++VL
Sbjct: 4   LLVEDEIRLAENIVDALRETGLAVDHAADGRLGQELALQANYDAIVLDLMLPGKSGQEVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R   A    P++ ++     ++ +   +SG DD ++KP    E+LARV A+ RR   
Sbjct: 64  RGLR--HAKISTPILILTAQEGKESVIQLLNSGADDYLSKPFDLGELLARVKALIRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQ------GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +    P+  FSD     +Q      G    L   E RILEYL+      V+K ++  
Sbjct: 119 --GKGTADPVLRFSDVEVDTIQQMVTRKGNRLELSPTEYRILEYLVHRPRAVVSKRELLE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  FD     NV+E HIS LR+KL    G   +++ R  GY +
Sbjct: 177 HLYD-FDWEHHSNVIEVHISNLRRKLNVTNGGPVIETLRHRGYRL 220


>gi|66046938|ref|YP_236779.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257645|gb|AAY38741.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330897073|gb|EGH28553.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330941394|gb|EGH44220.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 225

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL + + F P+++ R +GY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGY 218


>gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 229

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +R   +   VP+I ++        +   D+G DD V KP    E+ AR+ A+ R
Sbjct: 62  IEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++  ++ +  E G I +       +       L   E R+L+YLM + G+  ++ Q+  
Sbjct: 122 RIRPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           A++G  D  VE   V+ H+ +LRK L NK   DP+ + R  GY+ D N
Sbjct: 182 AVWG-SDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDVN 228


>gi|85709585|ref|ZP_01040650.1| DNA-binding response regulator CtrA [Erythrobacter sp. NAP1]
 gi|85688295|gb|EAQ28299.1| DNA-binding response regulator CtrA [Erythrobacter sp. NAP1]
          Length = 231

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 2/145 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L ++  A  Q P++ +S    + + +  F  G DD V KP H  E++AR+ A+ RR K  
Sbjct: 63  LKKLRVAKVQTPVLILSGIAEMDSKIRSFGFGADDYVTKPFHREELVARIHAVVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +   TG + V  D +  EV      L  +E  +LE L   +G  + K    + +YG  
Sbjct: 123 SQSVIRTGKLAVNLDAKTVEVDSARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206
           DE  E  +++  I KLRKKL +  G
Sbjct: 183 DEP-ELKIIDVFICKLRKKLSHACG 206


>gi|254439177|ref|ZP_05052671.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198254623|gb|EDY78937.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 239

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     ++ L  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLSRI--ETPILILSGEDGTESKLKGFGFGADDYMTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +  +TG I V  D +  EV      L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVIKTGVIAVNLDAKTVEVDSSPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            +YG  DE  E  +++  I KLRKKL    G D
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSEATGGD 208


>gi|194365171|ref|YP_002027781.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347975|gb|ACF51098.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 223

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 4/165 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G   +   R +R +  + +I ++   +L   ++  D G DD + KP+   E++AR+ A
Sbjct: 57  GDGAGFVATARSLRPN--LAVIMLTAKGTLSDKVEGLDVGADDYLVKPVAIEELMARIRA 114

Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR   +       G +    +    +V+G+   LPRR+  +L+ L   +G+ V ++ +
Sbjct: 115 VSRRPSAMVTPSLRLGRLEFDFESLQAQVEGQPLALPRRQVLVLQALAMRQGRTVTRSAL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +A+YG FD+ ++ N +++HISKLRK L+       +   R +GY
Sbjct: 175 EAAVYG-FDDEIQSNALDAHISKLRKALQQAGAGVEIHVIRGVGY 218


>gi|254459879|ref|ZP_05073295.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium
           HTCC2083]
 gi|206676468|gb|EDZ40955.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 238

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     ++ +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLARI--ETPILILSGSDDTESKIKGFGFGADDYLTKPFHRDELIARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG I V  D +  EV+     L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSIIHTGKIAVNLDAKTVEVENATVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            +YG  DE  +  +++  I KLRKKL    G D
Sbjct: 177 HLYGGMDEP-KLKIIDVFICKLRKKLCEATGED 208


>gi|16127265|ref|NP_421829.1| cell cycle transcriptional regulator CtrA [Caulobacter crescentus
           CB15]
 gi|221236066|ref|YP_002518503.1| cell cycle response regulator CtrA [Caulobacter crescentus NA1000]
 gi|295690880|ref|YP_003594573.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|239977105|sp|B8H358|CTRA_CAUCN RecName: Full=Cell cycle transcriptional regulator CtrA; AltName:
           Full=Response regulator SokA
 gi|239977106|sp|P0CAW8|CTRA_CAUCR RecName: Full=Cell cycle transcriptional regulator CtrA; AltName:
           Full=Response regulator SokA
 gi|1151107|gb|AAA93080.1| cell cycle transcriptional regulator [Caulobacter crescentus CB15]
 gi|13424677|gb|AAK24997.1| cell cycle transcriptional regulator CtrA [Caulobacter crescentus
           CB15]
 gi|220965239|gb|ACL96595.1| cell cycle response regulator ctrA [Caulobacter crescentus NA1000]
 gi|295432783|gb|ADG11955.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 231

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 3/143 (2%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +R A    P++ +S    + T +  F  G DD + KP H  E++AR+ A+ RR 
Sbjct: 60  IDVLRTLRVAKINTPIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRRS 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K  + +  +TG I V  D +  EV G    L  +E ++LE L   +G  + K    + +Y
Sbjct: 120 KGHAQSVIKTGDIVVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G  DE  E  +++  I KLRKKL
Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKL 201


>gi|208779553|ref|ZP_03246898.1| response regulator receiver domain protein [Francisella novicida
           FTG]
 gi|208744514|gb|EDZ90813.1| response regulator receiver domain protein [Francisella novicida
           FTG]
          Length = 228

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 96/199 (48%), Gaps = 18/199 (9%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL K+G I     DG + + F     E  L      D+S      I  G   LE+ R IR
Sbjct: 19  ALQKEGLIVNLVSDGEAAQTF----IESGLYDIVVLDIS----MPIKTG---LEVLRNIR 67

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
               +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+   + ++ 
Sbjct: 68  NRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRIDTRSGKSV 127

Query: 128 TGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              IR      +P  +     G + P+ ++E  +L  L+ N G+ V KTQ+   +Y   D
Sbjct: 128 NEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLEEVYS-TD 186

Query: 183 EAVEENVVESHISKLRKKL 201
           + ++ N +E H+  LRKK+
Sbjct: 187 KEMDTNTLEVHMHNLRKKI 205


>gi|289424086|ref|ZP_06425872.1| two-component response regulator [Peptostreptococcus anaerobius
           653-L]
 gi|289155511|gb|EFD04190.1| two-component response regulator [Peptostreptococcus anaerobius
           653-L]
          Length = 229

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 86/153 (56%), Gaps = 7/153 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAETG 129
            P++ ++   SL   ++ F  G +D + KP +  E++AR  AI R   R+K  N   E  
Sbjct: 78  TPILILTAKESLDDKMEAFTLGANDYLTKPFYMDELVARTFAILRTNGRIK-DNKYLEFK 136

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +++ S+ +   +  E   L  ++ ++LEY + N+G  + K QI+  I+G+  +A  E +
Sbjct: 137 DLKIDSEKKAVFIHDEEIELQNKQFKLLEYFVLNKGSILLKEQIYDRIWGIDSDATIE-I 195

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           VE ++S LRKKL +K  +D  + +KR +GY +D
Sbjct: 196 VEVYVSNLRKKL-SKFDYDKYIKTKRKVGYILD 227


>gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
 gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
          Length = 219

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 12/182 (6%)

Query: 45  DVSAIEAFLIGKGEKVLE----LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           D    +A ++  G  V++    L R  R   +VP++ ++        +   D+G DD V 
Sbjct: 41  DTEPYDAIVLDVGLPVMDGISVLERWRRDQKKVPVLILTARDRWSDKVAGIDAGADDYVT 100

Query: 101 KPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
           KP H  E+LARV A+ RR    + +  E GP+R+ +      V G    L   E R+L+Y
Sbjct: 101 KPFHIEEVLARVRALIRRAAGHATSELECGPLRLDTRTARVSVDGTPLKLTSHEYRLLDY 160

Query: 160 LMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           LM ++   V+++++   +Y   FD   + N +E  + +LRK    K+G D +++ R  GY
Sbjct: 161 LMHHQDSVVSRSELIEHLYDQDFDR--DSNTIEVFVGRLRK----KIGIDLIETIRGQGY 214

Query: 219 SI 220
            +
Sbjct: 215 RL 216


>gi|325521131|gb|EGD00037.1| OmpR family two-component system response regulator [Burkholderia
           sp. TJI49]
          Length = 223

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++    GP+   S  R   +  E  PL  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHSCVACGPLAYDSVDRSFRLADEALPLTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL N  G   V + R LGY ++
Sbjct: 180 GL-DESVNPDAIEIYVHRLRKKLENS-GVAIV-TLRGLGYLLE 219


>gi|227509360|ref|ZP_03939409.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227512243|ref|ZP_03942292.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227084521|gb|EEI19833.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227191072|gb|EEI71139.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 230

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126
           +H  +P++ ++   +L   +  F+ G DD + KP H  E+L RV A+ +R     ++N+ 
Sbjct: 72  SHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALLKRSGHLGNDNQM 131

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
              P  V    R   V+ +   L  +E  +L Y + N    + K QIF  ++G F+    
Sbjct: 132 VVEPFTVDLSNRTVTVRDQQLELNGKEFDLLVYFLQNPDTIITKEQIFDRLWG-FESETA 190

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +VVE ++S LRKK++      P+ + R +GY
Sbjct: 191 ISVVEVYMSNLRKKIKTATDLKPIKTLRNVGY 222


>gi|164688787|ref|ZP_02212815.1| hypothetical protein CLOBAR_02434 [Clostridium bartlettii DSM
           16795]
 gi|164602263|gb|EDQ95728.1| hypothetical protein CLOBAR_02434 [Clostridium bartlettii DSM
           16795]
          Length = 231

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 86/157 (54%), Gaps = 14/157 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ+P+I IS    + T +D    G DD + KP    E++AR+ +  RR  +
Sbjct: 62  EILKEVRQFSQIPIIIISAKDMISTKIDLLKLGADDYITKPFDLGEVIARIESNLRRYYI 121

Query: 122 SNNRAETG--PIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           SN+ +++   P+  + D       ++ ++   +  L  +E  ILE L+ N+ K  +K  +
Sbjct: 122 SNHVSDSDILPLLKYKDITLDENNKEIKINDCLLYLTAKEYMILELLIKNQNKVFSKANL 181

Query: 174 FSAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDP 209
           + +I+   +E + ++N +++HIS +R KL+    F+P
Sbjct: 182 YESIW--HEEYIGDDNAIKTHISNIRSKLKK---FNP 213


>gi|254489830|ref|ZP_05103025.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224464915|gb|EEF81169.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 219

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 10/166 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ VL   R I A  ++P++ ++   SLQ  +D  D G DD + KP    E+LAR+    
Sbjct: 59  GQDVLRAIRKINA--ELPVLILTARSSLQDKVDGLDGGADDYLAKPFDTDELLARLRVFE 116

Query: 117 RRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RRL  S   AE   G + + +  +  +V G    L RRE  +L+ LM N G+   +  + 
Sbjct: 117 RRLS-SLKHAELVVGNVAMDTKAQQVKVNGADLELSRREYMLLKTLMENVGRVQTRDSLE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +Y   DE +  N +E HI  LRKKL  +     + + R +GY+I
Sbjct: 176 TKLYSWGDE-IASNAIEVHIHHLRKKLPEQF----IRTVRGVGYTI 216


>gi|227524026|ref|ZP_03954075.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088765|gb|EEI24077.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 230

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126
           +H  +P++ ++   +L   +  F+ G DD + KP H  E+L RV A+ +R     ++N+ 
Sbjct: 72  SHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALLKRSGHLGNDNQM 131

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
              P  V    R   V+ +   L  +E  +L Y + N    + K QIF  ++G F+    
Sbjct: 132 VVEPFTVDLSNRTVTVRDQQLELNGKEFDLLVYFLQNPDTIITKEQIFDRLWG-FESETA 190

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +VVE ++S LRKK++      P+ + R +GY
Sbjct: 191 ISVVEVYMSNLRKKIKTATDLKPIKTLRNVGY 222


>gi|221065046|ref|ZP_03541151.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220710069|gb|EED65437.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 239

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 19/216 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +V  G      D G +++   S E    + +    DV+ I+  L   G   L
Sbjct: 3   LLLVEDDVMVASGIKLGLSDAGYAVDWVGSAERALEVLAQEAFDVAVIDIGL--PGINGL 60

Query: 62  ELPRIIRAH----SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           EL R +R+       +P++ ++   +LQ  +   D G DD + KP    E+LAR+ A+ R
Sbjct: 61  ELTRRLRSSDVESKAMPVLILTARDALQDRVQGLDWGADDYMVKPFELPELLARLRALMR 120

Query: 118 RLKVSNNRAET-GPIRVFSDGR---------DPEVQGEVFP--LPRRERRILEYLMANRG 165
           R + + +     G I + + GR         + E +G + P  L  RE  +LEYL+ N  
Sbjct: 121 RSQAATSAVLNFGCIELDTAGRRAGARQLPQEGETEGRLLPIDLGPREWTVLEYLLLNAP 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           K  +K ++  A+ G +D  +  N VE ++S+LR KL
Sbjct: 181 KPASKEKLLQALTG-WDREITPNAVEVYVSRLRSKL 215


>gi|164688154|ref|ZP_02212182.1| hypothetical protein CLOBAR_01799 [Clostridium bartlettii DSM
           16795]
 gi|164602567|gb|EDQ96032.1| hypothetical protein CLOBAR_01799 [Clostridium bartlettii DSM
           16795]
          Length = 223

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 13/156 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   SL   +  F+ G +D + KP +  E++AR+ AI R    +N + +     
Sbjct: 72  TPVLILTAKESLNDKVSAFEIGANDYLTKPFYMEELVARIYAILR----TNGKMQAKNTI 127

Query: 133 VFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            F D       R   ++ E   L  ++  +LEYL+ N+G  + K QI+  ++G+ D  V 
Sbjct: 128 DFKDLHLDLNKRRVFIKDEEIELQNKQFNLLEYLLLNKGSILLKEQIYDRVWGI-DSDVT 186

Query: 187 ENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
             +VE +IS LRKKL +K G+D  + +KR +GY  D
Sbjct: 187 IEIVEVYISHLRKKL-SKYGYDKCIKTKRKVGYMFD 221


>gi|302060525|ref|ZP_07252066.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato K40]
          Length = 225

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGDQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL + + F P+++ R +GY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGY 218


>gi|221369103|ref|YP_002520199.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides KD131]
 gi|221162155|gb|ACM03126.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides KD131]
          Length = 219

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+  R +RA  + +P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LDFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRY 119

Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + + R   GP+ +    R  E  G    L +RE  I E L+   G  V+KTQ+   +Y
Sbjct: 120 AGNPSPRLALGPLEIDIADRRIEGPGGEVTLSQREWAIFEALVKRPGSVVSKTQLEETLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD  VE N +E ++S+LRK    KLG D ++++R +GY +
Sbjct: 180 A-FDAEVESNTIEVYVSRLRK----KLGRDRIETRRGMGYRL 216


>gi|300741844|ref|ZP_07071865.1| DNA-binding response regulator [Rothia dentocariosa M567]
 gi|300381029|gb|EFJ77591.1| DNA-binding response regulator [Rothia dentocariosa M567]
          Length = 231

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 13/211 (6%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L ++GY A+F ++G       S  FE +++ S   D+  ++  L GK    +E+   IR+
Sbjct: 25  LAQEGYNAVFCENG-------SRAFETFMRHSP--DLVLLDLMLPGKSG--IEVCEQIRS 73

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
            S VP+I ++     +  +   ++G DD + KP  H E++AR+ A  R  +        G
Sbjct: 74  SSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHLELMARIRARLRPRESRQLVVRVG 133

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
              +  DGR  + +G   P+   E  +L  L+   G+ +++ ++   ++G  D  V +++
Sbjct: 134 DTIMDMDGRTLKYKGAEVPMTPLEFDLLAALVRRPGQAMSRQELLETVWGYSD--VSDSL 191

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V  H+ +LR K  +      + + R +GY +
Sbjct: 192 VNVHVQRLRAKFTDIGAEQVIQTVRGVGYKV 222


>gi|330980166|gb|EGH78348.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 225

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL   + F P+++ R +GY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDGSVAFKPIETVRGMGY 218


>gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas
           albilineans GPE PC73]
 gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas
           albilineans]
          Length = 227

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +++   A    +G +++     E   ++      DV  I+  L       +
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGL--PKMSGM 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R   +  P++ ++   S Q  ++    G DD + KP H  E+LARV A+ RR  
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             FD   + NV+E  I +LRKKL       P+++ R  GY
Sbjct: 181 QDFDR--DSNVLEVFIGRLRKKLDPDGELKPIETVRGRGY 218


>gi|119776435|ref|YP_929175.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768935|gb|ABM01506.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 224

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 12/156 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----E 127
           + P++ ++   S +  ++  D+G DD + KP H RE+ +R+ A+ RR   S  +A    E
Sbjct: 72  EFPILILTARDSWEDKVEGLDAGADDYLTKPFHPRELASRLKALIRR---SAGKASPVIE 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GP+ + +   +  + GE   L   E R+L++LM +RG+  +KT +   IY   D  ++ 
Sbjct: 129 NGPVTLNTASGEVLLNGERVSLSASEFRLLQFLMMHRGEVQSKTMLTEHIYDQ-DFDLDS 187

Query: 188 NVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221
           NV+E  I +LRKKL   N+LG   +++ R  GY ++
Sbjct: 188 NVIEVFIRRLRKKLDPDNELGL--IETLRGQGYRLN 221


>gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
 gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
          Length = 234

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + +
Sbjct: 63  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 122

Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + T         G I +        V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 123 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP   K     R LGY ID
Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|83859270|ref|ZP_00952791.1| cell cycle transcriptional regulator CtrA [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852717|gb|EAP90570.1| cell cycle transcriptional regulator CtrA [Oceanicaulis alexandrii
           HTCC2633]
          Length = 233

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL+  R+  A    P++ +S    +   +    SG DD + KP H  E++AR+ A+ 
Sbjct: 59  GFDVLKTLRV--AKVDTPILILSGNADIDNKVRGLGSGADDYMTKPFHKEELIARIHAVV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +  +TG I V  D +  EV G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSIIKTGDIAVNLDAKTVEVNGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            +YG  DE  E  +++  I KLRKKL +    D
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLASATSGD 208


>gi|240173231|ref|ZP_04751889.1| two-component regulator receiver domain-containing protein
           [Mycobacterium kansasii ATCC 12478]
          Length = 244

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 5/178 (2%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           R D+  ++  L G+     +L  +I+A   + ++ I+    L   L   D G DD V KP
Sbjct: 70  RPDLVVLDVMLPGR--DGFDLINVIQAWGDISIVLITARDGLPDRLRGLDGGADDYVVKP 127

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+++RV A+ RR        + G + +  DG      G    L   E R+L++L+ 
Sbjct: 128 FELAELVSRVGAVLRRRGRLPRVVQVGDLILDVDGGVAARDGHQLELTATELRLLDFLVQ 187

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            RG+ V+  QI +A++G   +A + N+V+ H+S LR+KL    G   + + R LGY +
Sbjct: 188 QRGRIVSARQILNAVWGY--DAYDTNLVQVHVSSLRRKLEAH-GPRILHTVRGLGYRL 242


>gi|317179202|dbj|BAJ56990.1| putative transcriptional regulator [Helicobacter pylori F30]
          Length = 223

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55
           M +L+ ++  V  G I    + G++++GF      SLE  E+L      D+   +  ++ 
Sbjct: 1   MRILLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +  + RI   HS + ++  SD P+ +  +  F+ G DD + KP  +R I A VA I
Sbjct: 52  DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEIHAFEQGADDYIAKP--YRSIKALVARI 109

Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             RL+   +N  E G + +  D       GR+ EV+G+ F        +L +L  +R + 
Sbjct: 110 ETRLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRNQI 162

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+K Q+  AI+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212


>gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 234

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + +
Sbjct: 63  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 122

Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + T         G I +        V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 123 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP   K     R LGY ID
Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|144899128|emb|CAM75992.1| two-component transcriptional regulator FeuP, winged helix family
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 222

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R   A   +P++ ++        +  F++G DD V KP    EI+ R+ A+ RR    
Sbjct: 63  LSRWREAGRDLPVLILTARGRWSEKMQGFNAGADDYVTKPFEMDEIVYRLRALIRRASGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           S      GP+R+ ++G    + G+V  L  +E RIL YLM + GK V++T++   +Y   
Sbjct: 123 SQPELACGPVRLDTNGGRVSLDGQVLQLTAQEFRILSYLMHHPGKVVSRTELMEHVYDRN 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + NV+E  I +LRK    K+G + + + R  GY +
Sbjct: 183 FDS--DSNVLEVMIGRLRK----KIGAEMIQTVRGQGYVL 216


>gi|28868885|ref|NP_791504.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971922|ref|ZP_03400022.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato T1]
 gi|301384491|ref|ZP_07232909.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato Max13]
 gi|302134652|ref|ZP_07260642.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852124|gb|AAO55199.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213923347|gb|EEB56942.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato T1]
 gi|330877107|gb|EGH11256.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330966567|gb|EGH66827.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016773|gb|EGH96829.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 225

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL + + F P+++ R +GY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGY 218


>gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae]
 gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
 gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +++   A    +G +++     E   ++      DV  I+  L       +
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGL--PKMSGM 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R   +  P++ ++   S Q  ++    G DD + KP H  E+LARV A+ RR  
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             FD   + NV+E  I +LRKKL       P+++ R  GY
Sbjct: 181 QDFDR--DSNVLEVFIGRLRKKLDPDGELKPIETVRGRGY 218


>gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia]
 gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
 gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 227

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +++   A    +G +++     E   ++      DV  I+  L       +
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGL--PKMSGM 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R   +  P++ ++   S Q  ++    G DD + KP H  E+LARV A+ RR  
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVAGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             FD   + NV+E  I +LRKKL       P+++ R  GY
Sbjct: 181 QDFDR--DSNVLEVFIGRLRKKLDPDGELKPIETVRGRGY 218


>gi|89054996|ref|YP_510447.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864545|gb|ABD55422.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 238

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R  R  + + ++   D P  +  L  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRHLRTARVDTPILILSGLDDP--ENKLKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +  +TG I V  D +  +V G    L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVIDTGRISVNLDAKTVDVAGTPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            +YG  DE  E  +++  I KLRKKL    G D
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSEATGGD 208


>gi|254779094|ref|YP_003057199.1| putative two-component response regulator [Helicobacter pylori B38]
 gi|254001005|emb|CAX28949.1| Putative two-component response regulator [Helicobacter pylori B38]
          Length = 223

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55
           M VL+ ++  V  G I    + G++++GF      SLE  E+L      D+   +  ++ 
Sbjct: 1   MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +  + RI   HS + ++  SD P+ +  +  F+ G DD + KP  +R I A VA I
Sbjct: 52  DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHVFEQGADDYIAKP--YRSIKALVARI 109

Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             RL+   +N  E G + +  D       GR+ EV+G+ F        +L +L  +R + 
Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+K Q+  AI+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212


>gi|88798651|ref|ZP_01114235.1| Two component Transcriptional regulator, Winged helix family
           protein [Reinekea sp. MED297]
 gi|88778751|gb|EAR09942.1| Two component Transcriptional regulator, Winged helix family
           protein [Reinekea sp. MED297]
          Length = 224

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + R +RA ++ +P++ +S    +   ++   +G DD + KP    E+LARV  + RR 
Sbjct: 60  MTILRTLRASNKTLPVLILSALSDVDQRVEGLSAGADDYLTKPFAFAELLARVQVLLRRP 119

Query: 120 KVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++   ETG IR+    +   VQG       RE R+LEYLM + G+ V++T +   
Sbjct: 120 GADSRQSTVLETGAIRLDLSRQKVWVQGREIAFQPREFRLLEYLMRHAGQVVSRTMLLEN 179

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++   FD   + NVV+ HIS+LR+KL +      + + R  GY
Sbjct: 180 VWDYHFDP--QTNVVDVHISRLRQKLDHGQETSVIRTVRGAGY 220


>gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 234

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 9/135 (6%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFP 148
           G DD + KP   RE++ARV AI RR ++SN   ET     G +++  D  +   +GE   
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTQLSNGEMETKEIVIGDLKILPDSYEAYFRGERLE 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L  +E  +L YL  ++G+ + + Q+ S+++  +D A +  +V+ HIS LR+K+       
Sbjct: 156 LTPKEFELLVYLAKHKGRVLTRDQLLSSVWN-YDFAGDTRIVDVHISHLREKIEQDTK-K 213

Query: 209 PVDSK--RFLGYSID 221
           P+  K  R LGY ++
Sbjct: 214 PIYIKTIRGLGYKLE 228


>gi|332283869|ref|YP_004415780.1| two-component response regulatory protein [Pusillimonas sp. T7-7]
 gi|330427822|gb|AEC19156.1| two-component response regulatory protein [Pusillimonas sp. T7-7]
          Length = 224

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   L++   +RA   QVP++ ++    ++  +   D+G DD V KP    E+ ARV A 
Sbjct: 56  GHSGLDILAKLRAEGEQVPVLILTARDGVEDRVAGLDAGADDYVTKPFDLTELAARVRAF 115

Query: 116 -YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             RR   +    E GP+   + GR+    GE   L  RE  +LE LMA  G+ V K QI 
Sbjct: 116 GRRRTGQAQPFIEAGPLLFDTVGREVRGNGERLSLSVREISVLEMLMARAGRVVTKRQIV 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +++   +D    EN VE ++ +LRK+L        + + R  GY +D
Sbjct: 176 NSLSA-WDADFSENAVEVYVYRLRKRLEGTGA--SIQTVRGFGYLLD 219


>gi|187777156|ref|ZP_02993629.1| hypothetical protein CLOSPO_00701 [Clostridium sporogenes ATCC
           15579]
 gi|187774084|gb|EDU37886.1| hypothetical protein CLOSPO_00701 [Clostridium sporogenes ATCC
           15579]
          Length = 233

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 12/164 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN-- 123
           IR  ++ P+I +S   S +T L+  + G DD + KP    E++ARV +  RR L+ S   
Sbjct: 70  IRKITKAPIIIVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVNSNLRRYLEFSTDE 129

Query: 124 -NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            NR+       I + ++ ++ +V   V  L  RE  +LE L+ N  K  +K  IF +I+G
Sbjct: 130 ENRSNILSYKEITLNTESKEVKVGQVVVTLTAREFAVLELLLTNPNKVYSKANIFESIWG 189

Query: 180 LFDEAV-EENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220
             +E + E+N V  H+S+LR KL   N  G D +++   +GY +
Sbjct: 190 --EEFLGEDNTVNVHVSRLRNKLSRANNNGEDYIETVWAMGYRL 231


>gi|153813960|ref|ZP_01966628.1| hypothetical protein RUMTOR_00167 [Ruminococcus torques ATCC 27756]
 gi|317501488|ref|ZP_07959686.1| winged helix family Two component transcriptional regulator
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088040|ref|ZP_08336961.1| hypothetical protein HMPREF1025_00544 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848356|gb|EDK25274.1| hypothetical protein RUMTOR_00167 [Ruminococcus torques ATCC 27756]
 gi|316897117|gb|EFV19190.1| winged helix family Two component transcriptional regulator
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408996|gb|EGG88455.1| hypothetical protein HMPREF1025_00544 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 224

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 8/169 (4%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           GE  LE+ + ++  S+   +P+I ++   S    +   DSG DD V KP    E+++R+ 
Sbjct: 55  GEDGLEILKKLKCSSKTKSIPVIMVTAKGSEYDKVIGLDSGADDYVTKPFGMMELVSRIK 114

Query: 114 AIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR K S  R   E   + +     +  V G   PL  +E  +LE LM N G  + + 
Sbjct: 115 AVLRRSKGSQERENPEIQGVHIDVKKHEVTVDGRTVPLTLKEFELLEKLMRNEGIVLTRD 174

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + I+G +D   E   V+ HI  LR+KL  K   + + + R +GY I
Sbjct: 175 QLLTEIWG-YDFDGETRTVDVHIRTLRQKLGEK--GEIIQTVRGVGYRI 220


>gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
 gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
          Length = 224

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 13/201 (6%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGISD 80
           L +E +  + A +  S +E  L GK + VL           E+ R +R  S +P+I ++ 
Sbjct: 22  LRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIMLPQLSGMEVLRRLRRESDLPVIMLTA 81

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRD 139
             S+   +   DSG DD + KP    E+LAR+ A  R+  V      T G + +  +   
Sbjct: 82  RDSVIDKVSGLDSGADDYITKPFAIEELLARIRAALRKRAVHTGSILTAGELAMDVERHQ 141

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             V+G+   L ++E  +L  L+ N+G+ + +  +  +++G FD   E N V+ +I  LR 
Sbjct: 142 VSVRGQSVELTKKEFDLLHQLLENKGRVLTREALLDSVWG-FDFVGETNSVDVYIRFLRS 200

Query: 200 KLRNKLGFDPVDSKRFLGYSI 220
           K+    G   + + R +GY I
Sbjct: 201 KIDEAFGIKLIHTVRGVGYVI 221


>gi|289677021|ref|ZP_06497911.1| two component transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
          Length = 227

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G +A     G++L+   S      +  +A+ DV  ++  L    E  + 
Sbjct: 4   LLCEDDELIASGIVAGLHAQGLNLDRVGSASAAHAILDAAQFDVMILDLGL--PDEDGIS 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R+    +P++ ++    +   +    +G DD + KP   RE+ AR+  + RR+  
Sbjct: 62  LLRSLRSRGHNIPVLILTARDDVDDRVKGLHAGADDYMVKPFDLRELFARLHTLVRRVAG 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  E G +      R+  + G    L RRE+ +L  L+ N G+ ++  Q+  ++YG 
Sbjct: 122 RTVNHIEHGILTYDPSTRETWLSGTAIDLSRREQAVLLALLNNPGRVLSLEQLKDSVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+    KLG   +++ R  GY +
Sbjct: 182 TDE-VESNALNVHIFHLRR----KLGVQIIETVRGSGYRL 216


>gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A]
          Length = 234

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + +
Sbjct: 63  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAA 122

Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + T         G I +        V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 123 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP   K     R LGY ID
Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain-containing protein
           [Herbaspirillum seropedicae SmR1]
 gi|300075473|gb|ADJ64872.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain protein [Herbaspirillum
           seropedicae SmR1]
          Length = 222

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 4/141 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+   H+ VP++ ++   S+   ++   +G DD + KP   RE++AR+  + RR +  
Sbjct: 63  LRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRR-QTP 121

Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  AE   G +   S+ R   V G    LP RE  +LE L+  +GK V+KT +   ++ L
Sbjct: 122 DKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFSL 181

Query: 181 FDEAVEENVVESHISKLRKKL 201
            +E    + +E +IS+LRKKL
Sbjct: 182 SEEP-SADAIEVYISRLRKKL 201


>gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 256

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + +
Sbjct: 85  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 144

Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + T         G I +        V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 145 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 204

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP   K     R LGY ID
Sbjct: 205 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 252


>gi|183982311|ref|YP_001850602.1| two-component regulator receiver domain-containing protein
           [Mycobacterium marinum M]
 gi|183175637|gb|ACC40747.1| two-component regulator - receiver domain [Mycobacterium marinum M]
          Length = 247

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       D G   +  +  E  E +    R D+  ++  L G+     
Sbjct: 29  VLVVEDSETIREMVNEALADVGYHTDTRSDGEGLERVLQGLRPDLVVLDVMLPGR--DGF 86

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L  +IR    + ++ I+    L   L   D G DD V KP    E+++RV A+ RR   
Sbjct: 87  ALIDVIREWGDIGIVLITARDGLPDRLRGLDGGADDYVVKPFELAELVSRVGAVLRRRGR 146

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G + + S+       G    L   E R+L++L+  RG+ V+ TQI +A++G  
Sbjct: 147 LPRVVQVGDLMLDSEAGVAARDGHQLDLTATELRLLDFLVQQRGRIVSATQILNAVWGY- 205

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +A + N+V+ H+S LR+KL    G   V + R +GY +
Sbjct: 206 -DAYDANLVQVHVSSLRRKLEAH-GPRIVQTVRGIGYRL 242


>gi|241668018|ref|ZP_04755596.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876552|ref|ZP_05249262.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842573|gb|EET20987.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 229

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L +I+R  +   P+I +S   S +  +    SG DD + KP    E++ RV  +Y+R 
Sbjct: 64  ISLLKILRKQNVTTPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELMVRVNILYKRT 123

Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           K      +++   G I +     +     E+  L +RE ++L  L+ ++ + V+KT I  
Sbjct: 124 KQIAEAQSHKLTCGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILK 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 184 EVWD-YDFDPQTNVVEVHISRLRNKLTENGLPDPIKTIRGFGYVI 227


>gi|89255956|ref|YP_513318.1| two-component response regulator [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314439|ref|YP_763162.1| two-component response regulator [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501952|ref|YP_001428017.1| two-component response regulator [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954599|ref|ZP_06559220.1| two-component response regulator [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295311942|ref|ZP_06802766.1| two-component response regulator [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143787|emb|CAJ78992.1| Two-component response regulator [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129338|gb|ABI82525.1| two-component response regulator [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252555|gb|ABU61061.1| Two-component response regulator [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 228

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR    +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+
Sbjct: 60  LEVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRI 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + ++    IR      +P  +     G + P+ ++E  +L  L+ N G+ V KTQ+ 
Sbjct: 120 DTRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             IY   D+ ++ N +E H+  LRKK+
Sbjct: 180 EEIYS-TDKEMDTNTLEVHMHNLRKKI 205


>gi|120553228|ref|YP_957579.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120323077|gb|ABM17392.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 227

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +R    ++P+I ++    L   L   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LDIVRQVREQGVELPIIILTARSELTEKLQGLDAGADDYLTKPFAMSELKARIRAVTRRR 119

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +VS    + G + +  D    +V  E F LPR E +IL YLM +  +   + ++   
Sbjct: 120 SGTRVSG--LKVGRLVLDPDSAQLQVGTETFVLPRSELQILHYLMRHPDQVATRRRLEEQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +YG +D+  E N +E H+  LR+    +LG   + + R +GY +D
Sbjct: 178 LYG-WDQGAESNALEVHVHHLRR----RLGKQAIRTVRGVGYMLD 217


>gi|73541789|ref|YP_296309.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72119202|gb|AAZ61465.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 226

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 4/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR     + +   GP+
Sbjct: 73  MPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSELEARARALIRRSHGHESTQLSCGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              S  R   + GE+  L RRER +LE L+   GK V K+ +   I+G+ DE+V  + +E
Sbjct: 133 HYDSVSRAFTIDGELLQLTRRERSVLEVLLLRNGKAVNKSALSEKIFGI-DESVNPDAIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +I +LRKKL    G   V + R LGY I+
Sbjct: 192 IYIHRLRKKLDGS-GVAIV-TLRGLGYLIE 219


>gi|56708575|ref|YP_170471.1| two component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671046|ref|YP_667603.1| two component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118498024|ref|YP_899074.1| two-component response regulator [Francisella tularensis subsp.
           novicida U112]
 gi|134301473|ref|YP_001121441.1| two component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931193|ref|YP_001891177.1| two component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194323249|ref|ZP_03057033.1| two component response regulator [Francisella tularensis subsp.
           novicida FTE]
 gi|224457753|ref|ZP_03666226.1| two component response regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371203|ref|ZP_04987205.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254373380|ref|ZP_04988868.1| hypothetical protein FTCG_00968 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254875432|ref|ZP_05248142.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|54112897|gb|AAV29082.1| NT02FT1880 [synthetic construct]
 gi|56605067|emb|CAG46176.1| two component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321379|emb|CAL09559.1| two component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423930|gb|ABK90320.1| two-component response regulator [Francisella novicida U112]
 gi|134049250|gb|ABO46321.1| two component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569443|gb|EDN35097.1| hypothetical protein FTBG_00969 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151571106|gb|EDN36760.1| hypothetical protein FTCG_00968 [Francisella novicida GA99-3549]
 gi|187712102|gb|ACD30399.1| two component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194322613|gb|EDX20093.1| two component response regulator [Francisella tularensis subsp.
           novicida FTE]
 gi|254841431|gb|EET19867.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159799|gb|ADA79190.1| two component response regulator [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332678746|gb|AEE87875.1| response regulator in two-component regulatory system with PhoQ
           [Francisella cf. novicida Fx1]
          Length = 229

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L +I+R  +   P+I +S   S +  ++   SG DD + KP    E++ RV  +Y+R 
Sbjct: 64  ISLLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRT 123

Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           K       ++   G I +     +     E+  L +RE ++L  L+ ++ + V+KT I  
Sbjct: 124 KQITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILK 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 184 EVWD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 227


>gi|326789756|ref|YP_004307577.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540520|gb|ADZ82379.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 217

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 1/136 (0%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +I+  +Q P I ++   SLQ+ +  F  G DD + KP    E+LARV AI RR + ++  
Sbjct: 63  VIKQVNQTPTIFLTAKNSLQSRIQGFSLGADDYITKPFEMLELLARVEAILRRTQKASKY 122

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E   +++  D       G++     +E  +LE L+ NR   +++ ++   ++G +D   
Sbjct: 123 FEIRNVKIDFDSHQVFYNGQLVDFTPKEYNLLEVLINNRNIALSRERLLELVWG-YDFEG 181

Query: 186 EENVVESHISKLRKKL 201
           +   V+ HI KLRKKL
Sbjct: 182 DTRTVDVHIQKLRKKL 197


>gi|228912374|ref|ZP_04076064.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228847229|gb|EEM92193.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
          Length = 214

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 56  FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 113

Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            SNN++         + V SD     V     PL  +E  IL+ L+ N  K + +  I  
Sbjct: 114 -SNNQSTDNHFVFRELHVDSDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVE 172

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A +  ++++H+  +RK    KL    + + + +GY ID
Sbjct: 173 KIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 213


>gi|325914534|ref|ZP_08176878.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325539304|gb|EGD10956.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 227

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 5/161 (3%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL + +R   +  P++ ++   S Q  ++    G DD + KP H  E+LARV A+ RR 
Sbjct: 60  MELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRA 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY
Sbjct: 120 AGWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY 179

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              FD   + NV+E  I +LRKKL       P+++ R  GY
Sbjct: 180 QQDFDR--DSNVLEVFIGRLRKKLDPDGELKPIETVRGRGY 218


>gi|208779566|ref|ZP_03246911.1| two component response regulator [Francisella novicida FTG]
 gi|208744527|gb|EDZ90826.1| two component response regulator [Francisella novicida FTG]
          Length = 229

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L +I+R  +   P+I +S   S +  ++   SG DD + KP    E++ RV  +Y+R 
Sbjct: 64  ISLLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRT 123

Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           K       ++   G I +     +     E+  L +RE ++L  L+ ++ + V+KT I  
Sbjct: 124 KQITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILK 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 184 EVWD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 227


>gi|260576790|ref|ZP_05844775.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259021042|gb|EEW24353.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 237

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 15/193 (7%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           Y    G+DG+ L      +++  L      D+S         G +VL   R+ R   + P
Sbjct: 28  YCTDLGEDGIDLAKL--YDYDLILLDLNLPDMS---------GHEVLRQLRLARV--ETP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133
           ++ ++     +  +  F  G DD + KP H  E++AR+ AI RR K  + +   TG + V
Sbjct: 75  ILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSKGHAQSVIRTGKVAV 134

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D +  +V G+   L  +E ++LE L   +G  + K    + +YG  DE  E  +++  
Sbjct: 135 NLDAKTVDVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKIIDVF 193

Query: 194 ISKLRKKLRNKLG 206
           I KLRKKL    G
Sbjct: 194 ICKLRKKLAEATG 206


>gi|254374844|ref|ZP_04990325.1| two component response regulator [Francisella novicida GA99-3548]
 gi|151572563|gb|EDN38217.1| two component response regulator [Francisella novicida GA99-3548]
          Length = 229

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L +I+R  +   P+I +S   S +  ++   SG DD + KP    E++ RV  +Y+R 
Sbjct: 64  ISLLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRT 123

Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           K       ++   G I +     +     E+  L +RE ++L  L+ ++ + V+KT I  
Sbjct: 124 KQITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILK 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 184 EVWD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 227


>gi|118617161|ref|YP_905493.1| two component regulator receiver domain-containing protein
           [Mycobacterium ulcerans Agy99]
 gi|118569271|gb|ABL04022.1| two component regulator - receiver domain [Mycobacterium ulcerans
           Agy99]
          Length = 247

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 6/187 (3%)

Query: 34  FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS 93
            EE LQ   R D+  ++  L G+      L  +IR    + ++ I+    L   L   D 
Sbjct: 62  LEEVLQG-LRPDLVVLDVMLPGR--DGFALIDVIREWGDIGIVLITARDGLPDRLRGLDG 118

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           G DD   KP    E+++RV A+ RR        + G + + S+       G    L   E
Sbjct: 119 GADDYAVKPFELAELVSRVGAVLRRRGRLPRVVQVGDLMLDSEAGVAARDGHQLDLTATE 178

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            R+L++L+  RG+ V+ TQI +A++G   +A + N+V+ H+S LR+KL    G   V + 
Sbjct: 179 LRLLDFLVQQRGRIVSATQILNAVWGY--DAYDANLVQVHVSSLRRKLEAH-GPRIVQTV 235

Query: 214 RFLGYSI 220
           R +GY +
Sbjct: 236 RGIGYRL 242


>gi|227819642|ref|YP_002823613.1| two-component response regulator [Sinorhizobium fredii NGR234]
 gi|227338641|gb|ACP22860.1| putative two-component response regulator [Sinorhizobium fredii
           NGR234]
          Length = 224

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 11/164 (6%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R +R  H+ +P++ I+   S+   +   D+G DD + KP HHRE+L+R  A+ RR 
Sbjct: 60  LDLLRWMRQEHAGLPVLVITARGSVDERVQGLDAGADDYLVKPFHHRELLSRCRAMLRR- 118

Query: 120 KVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              N  A     E G +R      +   +G +  LP RER ++E LM   G+ V K ++ 
Sbjct: 119 ---NPHAIQPVLEAGALRFDPATAELTCEGAMIALPPRERSLIEILMREVGRVVPKRRLE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +A+   + + +  N +E  +S++RK+L+       +++ R +GY
Sbjct: 176 TALSE-YGQELSSNALELAVSRVRKRLQPLDTGVQIETVRGIGY 218


>gi|118587742|ref|ZP_01545152.1| probable transcription regulator protein [Stappia aggregata IAM
           12614]
 gi|118439364|gb|EAV45995.1| probable transcription regulator protein [Stappia aggregata IAM
           12614]
          Length = 237

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 10/133 (7%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV-FSDGRDPEVQGEVFP 148
            D+G DD V KP H  E+LARV A+ RR    ++N    G +R+    GR   V G    
Sbjct: 106 IDAGADDYVAKPFHMEEVLARVRALVRRAAGHASNELTCGAVRLDLRSGR-VTVDGSAVK 164

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207
           L   E R+L YL+ ++GK +++T++   +Y   FD   + N VE  + +LRK    K+G 
Sbjct: 165 LTSHEYRLLSYLLHHQGKVISRTELTEHLYDQDFDR--DSNTVEVFVGRLRK----KIGS 218

Query: 208 DPVDSKRFLGYSI 220
           D +++ R LGY +
Sbjct: 219 DMIETIRGLGYRL 231


>gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 256

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + +
Sbjct: 85  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 144

Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + T         G I +        V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 145 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 204

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP   K     R LGY ID
Sbjct: 205 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 252


>gi|254419082|ref|ZP_05032806.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196185259|gb|EDX80235.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 233

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R      P++ +S    ++T +  F  G DD + KP H  E++AR  A+ RR 
Sbjct: 60  LEVLRQLRVGKINTPVMILSGSHEIETKVKTFGGGADDYLTKPFHKDELIARTHAVVRRS 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K  +     TG I V  D +  EV G    L  +E ++LE L   +G  + K    + +Y
Sbjct: 120 KGHAQAIIHTGEIAVNLDAKTVEVNGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G  DE  E  +++  I KLRKKL
Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKL 201


>gi|221065578|ref|ZP_03541683.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220710601|gb|EED65969.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 222

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 10/205 (4%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRA-HSQVPLIGI 78
           G+  EG + +     +Q+ A     A  A ++  G   ++ LEL +IIRA    +P++ +
Sbjct: 19  GLRREGIDVVHVTTAMQAEAAVTQEAFHALILDLGLPDKEGLELLKIIRAIEPSMPILIV 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDG 137
           S   +++  L     G DD + KP   RE+  RV A+ RR +  S+     GP+R+    
Sbjct: 79  SARDAIEHRLMGLHQGADDYLIKPFDLRELAVRVHALLRRTQGRSSQWIHAGPLRLEPAT 138

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
               +  +   L RRE  ++ +L   R   +    +   ++GL +E V  N +  HI  +
Sbjct: 139 GQAWLHEQAVQLSRREIDLIAHLANARNSWMRSEVLNERLFGLHEE-VGSNALNVHIHNI 197

Query: 198 RKKLRNKLGFDPVDSKRFLGYSIDW 222
           RK    KLG + +++ R LGY + W
Sbjct: 198 RK----KLGNEAIENSRGLGYRLGW 218


>gi|84516173|ref|ZP_01003533.1| DNA-binding response regulator CtrA [Loktanella vestfoldensis
           SKA53]
 gi|84509869|gb|EAQ06326.1| DNA-binding response regulator CtrA [Loktanella vestfoldensis
           SKA53]
          Length = 237

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R  +  P++ ++     ++ L  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLSRIDT--PILILTGDDGTESKLKSFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +   TG I V  D +  EV G    L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSIIRTGQIAVNLDAKTVEVAGNTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 231

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 4/164 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR HS VP+I ++    +   +   DSG DD V KP    E+LAR+ A  R+ K
Sbjct: 63  IEICRKIRQHSNVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSK 122

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N   E      + + +  R  +   ++  L +RE  +LEYL+ N+G  + + QI   +
Sbjct: 123 QLNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +    + NVV+ +I  LR K+ +      + + R +GY  +
Sbjct: 183 WG-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCE 225


>gi|158422824|ref|YP_001524116.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158329713|dbj|BAF87198.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 233

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A  + P++ +S   + +  +  F  G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRSLRLAKVKTPILILSGLANTEDKVKGFGFGADDYLTKPFHKDEMVARIHAIVRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  +TG + V  D +  EV+G    L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVEGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
             DE  E  +++  I KLRKKL N
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203


>gi|84686906|ref|ZP_01014790.1| two component transcriptional regulator, winged helix family
           protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84665103|gb|EAQ11583.1| two component transcriptional regulator, winged helix family
           protein [Rhodobacterales bacterium HTCC2654]
          Length = 237

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     +  L  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLARI--ETPILILSGNDDTENKLRGFGFGADDYMTKPFHRDELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +  +TG + V  D +  EV G    L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSVIQTGRVAVNLDAKSVEVDGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|258545772|ref|ZP_05706006.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
 gi|258519017|gb|EEV87876.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
          Length = 219

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR     PLI +S        +   + G DD   KP  +RE+++R+ A+ RR  
Sbjct: 61  FELCRRIRQQWTTPLIFLSARNEEIDRIVGLELGADDYCGKPFSNRELISRIKAVCRR-- 118

Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N  ET  +   +D  +     G    L R E R+L +L+A+ G+   + Q+ + ++ 
Sbjct: 119 --SNETETASVWQHNDSAQTISYHGTTLDLTRYEYRLLRHLLAHPGQTFDRDQLVNTLWD 176

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             D  ++   V+SHI  LR+KLR      DP+ ++R  GY ++
Sbjct: 177 HPDH-IDNRTVDSHIKTLRQKLRAIAPDADPIRTRRGYGYHLE 218


>gi|302387812|ref|YP_003823634.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198440|gb|ADL06011.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 223

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + IR +SQVP+I ++     +  L  FD GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  ETCKTIRKYSQVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRSNA 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+ +  E G I +        + G+   L  +E  +L Y + N+G  +++ +I + ++  
Sbjct: 125 VTADAVEIGGICIDKAAHQVTIDGKDIDLSYKEFELLAYFLENQGIALSREKILNNVWN- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG 206
           +D   +   +++H+    KKLRNK+G
Sbjct: 184 YDYFGDARTIDTHV----KKLRNKMG 205


>gi|153010575|ref|YP_001371789.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562463|gb|ABS15960.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 220

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------G 55
            ++++D A+++DG        G+S+ GF +   +   ++ A       +A ++      G
Sbjct: 3   VLIVEDDAVLRDGLTV-----GLSIGGFTADAVKTCEEAGAALTNHEFDALVLDLMLPDG 57

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G  VL+  R        P++ ++    +   +   D+G DD + KP    E+ AR+ A+
Sbjct: 58  SGLDVLKSLR--ERQDATPVLLLTARDQVADRIHGLDAGADDYLGKPFDLDEVAARLRAL 115

Query: 116 YRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR      +A  E   +R+    ++ E QGE   L RRE  IL  LM + G+ ++++QI
Sbjct: 116 VRR-AAGRPQALIEWRGLRLDPANQNVEHQGEPIRLSRREYSILHALMIHPGRILSRSQI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +YG + E VE N VE HI      LR KLG   + + R +GY +
Sbjct: 175 EEKLYG-WQEEVESNAVEVHI----HHLRGKLGPGMIQTVRGIGYRL 216


>gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 256

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + +
Sbjct: 85  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 144

Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + T         G I +        V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 145 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGEAVFFPLKEFELLEYLMQNKGRVMTRHQL 204

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP   K     R LGY ID
Sbjct: 205 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 252


>gi|311747539|ref|ZP_07721324.1| DNA-binding response regulator ArlR [Algoriphagus sp. PR1]
 gi|126575520|gb|EAZ79830.1| DNA-binding response regulator ArlR [Algoriphagus sp. PR1]
          Length = 227

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 4/169 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LEL +      ++ ++ IS   SL   L   D G DD + KP H  E+LAR+ A
Sbjct: 57  GNGLTLLELIK--SRKMEISILIISAKGSLDDKLSGLDLGADDYLAKPFHLAELLARLKA 114

Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           IYRR K+   +      I + +      V  ++  L ++E  +L + + N+ + V K  I
Sbjct: 115 IYRRTKMQGFDEVVYNEITIINSQLQVLVNNQLLDLTKKEYDLLLFFLTNKDRVVGKNAI 174

Query: 174 FSAIYGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G + D+    + V  H+  LRKK+    G D + +   LGY  D
Sbjct: 175 AHHLWGDYTDDLSNFDFVYQHVKNLRKKISAAGGRDYIRTVYGLGYKFD 223


>gi|329890527|ref|ZP_08268870.1| cell cycle transcriptional regulator ctrA [Brevundimonas diminuta
           ATCC 11568]
 gi|328845828|gb|EGF95392.1| cell cycle transcriptional regulator ctrA [Brevundimonas diminuta
           ATCC 11568]
          Length = 233

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 3/148 (2%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R      P++ +S    + T +  F  G DD + KP H  E++AR  A+ RR 
Sbjct: 60  LEVLRQLRNGKINTPVMILSGSHEIDTKVKTFGGGADDYLTKPFHKDELIARTHAVVRRS 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K  +     TG I V  D +  EV G    L  +E ++LE L   +G  + K    + +Y
Sbjct: 120 KGHAQAIIHTGEIAVNLDAKTVEVNGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206
           G  DE  E  +++  I KLRKKL    G
Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKLATAAG 206


>gi|217031634|ref|ZP_03437139.1| hypothetical protein HPB128_21g192 [Helicobacter pylori B128]
 gi|298736656|ref|YP_003729182.1| OmpR family two-component system response regulator [Helicobacter
           pylori B8]
 gi|216946834|gb|EEC25430.1| hypothetical protein HPB128_21g192 [Helicobacter pylori B128]
 gi|298355846|emb|CBI66718.1| two-component system, OmpR family, response regulator [Helicobacter
           pylori B8]
          Length = 223

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55
           M VL+ ++  V  G I    + G++++GF      SLE  E+L      D+   +  ++ 
Sbjct: 1   MRVLLIEKNSVLGGEI----EKGLNIKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +  + RI   HS + ++  SD P+ +  +  F+ G DD + KP  +R I A VA I
Sbjct: 52  DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109

Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             RL+   +N  E G + +  D       GR+ EV+G+ F        +L +L  +R + 
Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+K Q+  AI+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212


>gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 17/196 (8%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+G+     D GV +L+     +F+  +      +VS  +              R IR
Sbjct: 23  LEKEGFAVTCADSGVEALKLLEKRKFDLVVLDIMMPEVSGFDVL------------RRIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNR 125
              Q+P+I ++        L   + G DD + KP   RE+ AR+ A+ RR K S   N  
Sbjct: 71  EKIQIPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRRAKPSEAANTI 130

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E G IR+  + +   + G    L   E RIL  LMA+ G  V++ +I   ++G + E  
Sbjct: 131 LEYGGIRLDLNEKTASLNGRPLFLTPTEFRILAILMAHPGTIVSRLRILEEVFGGYYEGY 190

Query: 186 EENVVESHISKLRKKL 201
           E N +++HIS LRKKL
Sbjct: 191 ERN-LDTHISNLRKKL 205


>gi|257867051|ref|ZP_05646704.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873386|ref|ZP_05653039.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877129|ref|ZP_05656782.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257801107|gb|EEV30037.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257807550|gb|EEV36372.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811295|gb|EEV40115.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 224

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN-NRAETG 129
           Q P++ ++    L+  +  F  G DD + KP +  E+L R+ A+ +R L + N N  E  
Sbjct: 72  QTPVLILTAKDGLEDKVTGFQKGADDYLTKPFYREELLMRIKALLKRSLGLFNENTLEYN 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +       +   QG++ P+  +E  +L Y + NR   + K QIF  I+G FD      V
Sbjct: 132 GLLCNLGTNEVSYQGQLLPIQGKEFELLLYFLQNRNIILTKEQIFDRIWG-FDSETTLTV 190

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++S LRK LR + G D  + + R +GY
Sbjct: 191 VEVYMSNLRKHLR-QTGIDKEIRTLRNVGY 219


>gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185]
 gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185]
          Length = 231

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 6/158 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+     ++P++ ++   S+  T+     G DD + KP    E++AR+ A+ RR K  ++
Sbjct: 70  RLREGGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRRTKADDS 129

Query: 125 RAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              T   G + +  D  +    G V  +   E ++L YLM N G+ V+K QI   ++  +
Sbjct: 130 DGPTVTVGDLELDDDSHEVRRAGRVIDVSPTEFKLLRYLMLNAGRVVSKAQILDHVWD-Y 188

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           D   E  +VES+IS LR+K+ +  G +P + +KR +GY
Sbjct: 189 DFRGEAGIVESYISYLRRKI-DVDGLEPLIHTKRGVGY 225


>gi|310828176|ref|YP_003960533.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
 gi|308739910|gb|ADO37570.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
          Length = 231

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF    + + EE L +  RE  + I   ++       E+ R IR  S VP+I I+    
Sbjct: 24  EGFEPVVAYDGEEALAAYRREAPAVILLDVMMPKLDGFEVCRQIREESAVPIIMITARGE 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS-------- 135
               +   D G DD + KP    E++ARV AI RRL    +R     ++ FS        
Sbjct: 84  DFEKIMGLDIGADDYIVKPFSGGEVMARVRAILRRL----SRDGGARLQFFSYRGLTIDL 139

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
           D     V GE  PL ++E  +L  L ANR K  ++  +  A++G +D   +   V+SHI 
Sbjct: 140 DTYTTTVDGEAIPLTKKETELLWTLAANRQKVFSRDNLLDAVWG-YDYYGDNRTVDSHIR 198

Query: 196 KLRKKL 201
           +LR KL
Sbjct: 199 RLRAKL 204


>gi|167627448|ref|YP_001677948.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597449|gb|ABZ87447.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 229

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L +I+R  +  +P+I +S   S +  +    SG DD + KP    E++ RV  +Y+R 
Sbjct: 64  ISLLKILRKQNVTIPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELIVRVNILYKRT 123

Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           K      +++   G I +     +     E+  L +RE ++L  L+ ++ + V+KT I  
Sbjct: 124 KQIAEAQSHKLICGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILK 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 184 EVWD-YDFDPQTNVVEVHISRLRNKLTENGLPDPIKTIRGFGYVI 227


>gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931]
 gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931]
          Length = 228

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 18/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58
            +L++D   + D    L G      EGF  +  +  L +     RED   +   ++  G 
Sbjct: 4   ILLVEDEEALYDPLSFLLGR-----EGFTPVVVDNGLDAVPAFEREDPDLVLLDVMLPGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +E+ + IRA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR
Sbjct: 59  SGMEVCKKIRASSSVPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVLRR 118

Query: 119 LKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +   +       GP+R+  +     V GE   +P +E  +LE L+ N G+ + + Q
Sbjct: 119 QSPDHGDEQDQKALAAGPVRMDVERHVVTVDGEEVSMPLKEFELLEILLRNTGRVMTRAQ 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           +   ++G  D   +   ++ HI +LR K+  K    P  V + R LGY  +
Sbjct: 179 LIERVWG-ADYVGDTKTLDVHIKRLRSKIEPK-ASSPRYVITVRGLGYKFE 227


>gi|293604396|ref|ZP_06686803.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|311105155|ref|YP_003978008.1| response regulator 3 [Achromobacter xylosoxidans A8]
 gi|292817273|gb|EFF76347.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|310759844|gb|ADP15293.1| response regulator 3 [Achromobacter xylosoxidans A8]
 gi|317402710|gb|EFV83258.1| two-component system response regulatory protein [Achromobacter
           xylosoxidans C54]
          Length = 223

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETG 129
           +QVP++ ++    ++  +   D+G DD V KP    E+ ARV A   RR   +    E G
Sbjct: 71  NQVPVLILTARDGIEDRVAGLDAGADDYVTKPFELPELAARVRAFGRRRAGQAQPLIEVG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P+   + GR+    G+   L  RE  +LE LMA  G+ V K QI +++   +D    EN 
Sbjct: 131 PLVFDTVGREVRANGQRLSLSVRELSVLEMLMARVGRVVTKRQIVNSLSA-WDADFSENA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           VE ++ +LRK+L        + + R  GY +D
Sbjct: 190 VEVYVYRLRKRLEGTGA--SIQTVRGFGYMLD 219


>gi|330960611|gb|EGH60871.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 225

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHNLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL + + F P+++ R +GY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGY 218


>gi|304393343|ref|ZP_07375271.1| cell cycle transcriptional regulator CtrA [Ahrensia sp. R2A130]
 gi|303294350|gb|EFL88722.1| cell cycle transcriptional regulator CtrA [Ahrensia sp. R2A130]
          Length = 234

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 9/150 (6%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR  
Sbjct: 62  EVLRTLRLSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELVARIQAIVRR-- 119

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S   AE    TG ++V  D +  EV G+   L  +E ++LE L   +G  + K    + 
Sbjct: 120 -SKGHAESIITTGDLKVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNH 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +YG  DE  E  +++  I KLRKKL +  G
Sbjct: 179 LYGGMDEP-ELKIIDVFICKLRKKLASATG 207


>gi|300853644|ref|YP_003778628.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300433759|gb|ADK13526.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 225

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 112/226 (49%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D  ++ D  + +   +  +++  ++ +  +E  +S    D+  ++  L  K    
Sbjct: 3   LLLVEDEVMLSDALVYILKKNNYAVDAAYDGITGQEMAESEIY-DLIILDRMLPEKNG-- 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ + IR    + P++ ++   S++  ++  D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LDILKFIRKKGIETPVLMLTAMDSIENRVEGLDNGADDYLVKPFSKEELLARIRALSRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +  + G I++ S   +P     E  G    L  +E ++LE L  N+ + + K QI 
Sbjct: 119 --HTDFIQHGSIKLSSLTFNPLRGEIECNGNKTKLTTKESQLLELLARNKNQVLTKDQIL 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++GL  +    N +E + S LRKKLR       +++ R +GY +
Sbjct: 177 DRVWGLDSDIEMNNNIEVYFSYLRKKLRELKCNVVIETIRGIGYCL 222


>gi|188578983|ref|YP_001915912.1| two-component system regulatory protein (response regulator)
           required for AvrXa21 activity R2 (raxR2) [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188523435|gb|ACD61380.1| two-component system regulatory protein (response regulator)
           required for AvrXa21 activity R2 (raxR2) [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 223

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 5/161 (3%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL + +R   +  P++ ++   S Q  ++    G DD + KP H  E+LARV A+ RR 
Sbjct: 56  MELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRA 115

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY
Sbjct: 116 AGWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY 175

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              FD   + NV+E  I +LRKKL       P+++ R  GY
Sbjct: 176 QQDFDR--DSNVLEVFIGRLRKKLDPDGELKPIETVRGRGY 214


>gi|85708491|ref|ZP_01039557.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
 gi|85690025|gb|EAQ30028.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
          Length = 229

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 90/171 (52%), Gaps = 6/171 (3%)

Query: 56  KGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +G   +E+ R +R     + VP+I ++   +    +   ++G DD + KP   RE+LARV
Sbjct: 58  EGTSGIEVCRRLRRDKETAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARV 117

Query: 113 AAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           AA+ RR++  ++    E G I++       + +G    L   E R+L++ M + G+  ++
Sbjct: 118 AAVMRRIRPALAGETIEVGDIKLDPVAHKVQRRGRALQLGPTEYRLLKFFMESPGRVFSR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            Q+   ++G   + +E   V+ HI +LRK +  +   DP+ + R  GY+++
Sbjct: 178 GQLLDGVWGTGSD-IELRTVDVHIRRLRKAIGLEGAKDPIRTVRSAGYALE 227


>gi|47567077|ref|ZP_00237794.1| two-component response regulator vanRB [Bacillus cereus G9241]
 gi|47556395|gb|EAL14729.1| two-component response regulator vanRB [Bacillus cereus G9241]
          Length = 221

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR    
Sbjct: 63  ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 122

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + I+
Sbjct: 123 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIHTLLQNRGKVLSRSDLLNKIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +  V+++HI  LRK    KLG   + + + +GY I+
Sbjct: 183 G-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 220


>gi|253989214|ref|YP_003040570.1| DNA-binding transcriptional regulator PhoP [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780664|emb|CAQ83826.1| two-component response regulator phop [Photorhabdus asymbiotica]
          Length = 222

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        D G  ++   + +  ++  + +  D++ ++  L   GE  L
Sbjct: 3   ILIVEDNMLLRHHLTVQLRDTGHLVDAAANAKEADYYLAESEPDIAIVDLGL--PGEDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R   + +P++ ++   S Q  +   D+G DD V KP H  EI+AR+ A+ RR  
Sbjct: 61  SLIRRWRQKDEKLPILVLTARESWQEKVTVLDAGADDYVTKPFHLEEIIARMQALLRRNN 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   E  P R+    ++  + GE   L   E +I+E LM N  K V K  +   +Y 
Sbjct: 121 GLVSQIIEFPPFRIDLSRKELTIYGESVKLTAFEYKIVEILMCNSDKIVTKESLMRQLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  I +LRKK+++   ++ + + R  GY  D
Sbjct: 181 -DAELREGHSIDVLIGRLRKKIQDVWPYEAIVTVRSQGYRFD 221


>gi|24375965|ref|NP_720008.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350955|gb|AAN57452.1|AE015880_11 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 220

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 85/150 (56%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++   +    +D   +G DD + KP H  E+LAR+ A+ RR    ++N  +   +
Sbjct: 73  MPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHFGRADNLLQHAGV 132

Query: 132 RVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
            +  D +     +GEV  L + E R+L YLMAN  K V+K+++   IY   D+  + NV+
Sbjct: 133 SLDVDKQTATNAEGEVIELTKIEYRLLHYLMANPSKIVSKSELSERIYE-EDQIKDSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++++LR+    +LG D ++++R  GY +
Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217


>gi|317009049|gb|ADU79629.1| transcriptional regulator [Helicobacter pylori India7]
          Length = 223

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55
           M +L+ ++  V  G I    + G++++GF      SLE  E+L      DV   +  ++ 
Sbjct: 1   MRILLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DVRNYDLVMVS 51

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +  + RI   HS + ++  SD P+ +  +  F+ G DD + KP  +R I A VA I
Sbjct: 52  DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109

Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             RL+   +N  E G + +  D       GR+ EV+G+ F        +L +L  +R + 
Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+K Q+  AI+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212


>gi|15611449|ref|NP_223100.1| putative transcriptional regulator [Helicobacter pylori J99]
 gi|108562829|ref|YP_627145.1| putative transcriptional regulator [Helicobacter pylori HPAG1]
 gi|208434350|ref|YP_002266016.1| putative transcriptional regulator [Helicobacter pylori G27]
 gi|210134599|ref|YP_002301038.1| transcriptional regulator [Helicobacter pylori P12]
 gi|217033302|ref|ZP_03438733.1| hypothetical protein HP9810_9g55 [Helicobacter pylori 98-10]
 gi|308184206|ref|YP_003928339.1| transcriptional regulator [Helicobacter pylori SJM180]
 gi|149242073|pdb|2HQR|A Chain A, Structure Of A Atypical Orphan Response Regulator Protein
           Revealed A New Phosphorylation-Independent Regulatory
           Mechanism
 gi|149242074|pdb|2HQR|B Chain B, Structure Of A Atypical Orphan Response Regulator Protein
           Revealed A New Phosphorylation-Independent Regulatory
           Mechanism
 gi|4154918|gb|AAD05966.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
 gi|107836602|gb|ABF84471.1| putative transcriptional regulator [Helicobacter pylori HPAG1]
 gi|208432279|gb|ACI27150.1| putative transcriptional regulator [Helicobacter pylori G27]
 gi|210132567|gb|ACJ07558.1| transcriptional regulator [Helicobacter pylori P12]
 gi|216944243|gb|EEC23668.1| hypothetical protein HP9810_9g55 [Helicobacter pylori 98-10]
 gi|261837837|gb|ACX97603.1| transcriptional regulator [Helicobacter pylori 51]
 gi|297379624|gb|ADI34511.1| transcriptional regulator [Helicobacter pylori v225d]
 gi|307637100|gb|ADN79550.1| two-component response regulator [Helicobacter pylori 908]
 gi|308060126|gb|ADO02022.1| transcriptional regulator [Helicobacter pylori SJM180]
 gi|308061756|gb|ADO03644.1| transcriptional regulator [Helicobacter pylori Cuz20]
 gi|317012243|gb|ADU82851.1| transcriptional regulator [Helicobacter pylori Lithuania75]
 gi|317013847|gb|ADU81283.1| transcriptional regulator [Helicobacter pylori Gambia94/24]
 gi|317177216|dbj|BAJ55005.1| putative transcriptional regulator [Helicobacter pylori F16]
 gi|317181746|dbj|BAJ59530.1| putative transcriptional regulator [Helicobacter pylori F57]
 gi|325995691|gb|ADZ51096.1| Two-component response regulator [Helicobacter pylori 2018]
 gi|325997287|gb|ADZ49495.1| putative transcriptional regulator [Helicobacter pylori 2017]
          Length = 223

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55
           M VL+ ++  V  G I    + G++++GF      SLE  E+L      D+   +  ++ 
Sbjct: 1   MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +  + RI   HS + ++  SD P+ +  +  F+ G DD + KP  +R I A VA I
Sbjct: 52  DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109

Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             RL+   +N  E G + +  D       GR+ EV+G+ F        +L +L  +R + 
Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+K Q+  AI+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212


>gi|311111737|ref|YP_003982959.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943231|gb|ADP39525.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
          Length = 231

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 13/211 (6%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L ++GY A+F ++G       S  FE +++ S   D+  ++  L GK    +E+   IR+
Sbjct: 25  LAQEGYNAVFCENG-------SRAFETFMRHSP--DLVLLDLMLPGKSG--IEVCEQIRS 73

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
            S VP+I ++     +  +   ++G DD + KP  H E++AR+ A  R  +        G
Sbjct: 74  SSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHLELMARIRARLRPRESRQLVVRVG 133

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
              +  DGR  + +G   P+   E  +L  L+   G+ +++ ++   ++G  D  V +++
Sbjct: 134 DTIMDMDGRTLKYKGVEVPMTPLEFDLLAALVRRPGQAMSRQELLETVWGYSD--VSDSL 191

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V  H+ +LR K  +      + + R +GY +
Sbjct: 192 VNVHVQRLRAKFTDIGAEQVIQTVRGVGYKV 222


>gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 296

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + +
Sbjct: 125 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 184

Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + T         G I +        V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 185 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 244

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP   K     R LGY ID
Sbjct: 245 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 292


>gi|163868751|ref|YP_001609968.1| cell cycle transcriptional regulator CtrA [Bartonella tribocorum
           CIP 105476]
 gi|161018415|emb|CAK01973.1| cell cycle transcriptional regulator CtrA [Bartonella tribocorum
           CIP 105476]
          Length = 233

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 15/188 (7%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           YI   G++G+ L      +++  L      D+S  +        K L L +I     + P
Sbjct: 28  YITDLGEEGIDLGKL--YDYDIILLDLNLPDMSGYDVL------KTLRLAKI-----KTP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133
           ++ +S   +++  +  F SG DD + KP H  E++AR+ A+ RR K  + +   TG + V
Sbjct: 75  VLILSGMNAIEDKVRGFGSGADDYMTKPFHKDELIARIHAVVRRSKGHAQSVIVTGDLTV 134

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D +  EV G    L  +E ++LE L   +G  + K    + +YG  DE  E  +++  
Sbjct: 135 NLDAKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKIIDVF 193

Query: 194 ISKLRKKL 201
           I KLRKKL
Sbjct: 194 ICKLRKKL 201


>gi|294677200|ref|YP_003577815.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus
           SB 1003]
 gi|6467529|gb|AAF13177.1|AF181078_1 response regulator homolog [Rhodobacter capsulatus]
 gi|294476020|gb|ADE85408.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus
           SB 1003]
          Length = 237

 Score = 71.6 bits (174), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 3/148 (2%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R A    P++ ++     +  +  F  G DD + KP H  E++AR+ AI RR 
Sbjct: 60  LEVLRQLRLARVDTPILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRS 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K  S +   TG I V  D +  EV G+   L  +E ++LE L   +G  + K    + +Y
Sbjct: 120 KGHSQSIIRTGKISVNLDAKTVEVGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206
           G  DE  E  +++  I KLRKKL    G
Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKLAEVTG 206


>gi|116511831|ref|YP_809047.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107485|gb|ABJ72625.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 228

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 20/225 (8%)

Query: 15  YIALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAF--------------LIGKGE 58
           Y  L  +D  S+  +    L FE++  S+A + ++A+E F              +I K +
Sbjct: 3   YHVLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLD 62

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +  L R+ +     P+I ++    +   +   D+G DD + KP    E+LAR+  I+R+
Sbjct: 63  GLTVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRK 122

Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              S ++  E   ++V       EV G+   L +RE  +L Y + +RG  V++  I   +
Sbjct: 123 WSTSCSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDDV 182

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+ FD   +EN V++++  LR K+        +++ R +GY ++
Sbjct: 183 WGMDFDG--QENTVDAYVRYLRAKIDLPNHKSLIETVRGVGYRLN 225


>gi|257876917|ref|ZP_05656570.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
 gi|257811083|gb|EEV39903.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
          Length = 230

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  S+VP+I +S        +   + G DD + KP     +LA++ A+ RR  + S+ +
Sbjct: 67  IRKKSEVPIIFLSSMDQQMNQIMAMNMGADDYLTKPFDLAFVLAKIQALLRRSYQYSHQQ 126

Query: 126 A---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           A   E G +  +      + QGE  PL   E RIL  L+ +RGK VAK  I   ++   +
Sbjct: 127 ALTFEIGQVTFYPTENVLKKQGEQLPLSPNEARILSLLLQHRGKIVAKETIIEMLWN-SE 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E ++ N +  ++++LRKKL      D + + +  GY I+
Sbjct: 186 EFIDNNTLAVNMTRLRKKLSQIELSDLIQTVKNKGYLIE 224


>gi|260589327|ref|ZP_05855240.1| DNA-binding response regulator YycF [Blautia hansenii DSM 20583]
 gi|260540408|gb|EEX20977.1| DNA-binding response regulator YycF [Blautia hansenii DSM 20583]
          Length = 222

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++++   AL  ++G   E    + FE+  Q  A E    +   +I  G    
Sbjct: 4   IIVIEDDKVLREALTALLRENGY--EVCQIVRFEKTEQQIAEEKADLVLLDIILPGTNGQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +     G DD + KP +   +L ++ A++RRLK 
Sbjct: 62  EILRNLRRISDVPVIMLTSKTGETDEILAMSYGADDYITKPYNPALLLLKIEALFRRLKP 121

Query: 122 SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + E     VF +     +  Q     L + E  I  YL+ NRGK V++ ++   ++ 
Sbjct: 122 QEKQEELEYRGVFLNPLKSTLRYQDREIVLSKNEISIFHYLLKNRGKIVSRDELMDYLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             D  V++N +  +I++LRKKL      D ++++R  GY
Sbjct: 182 CND-FVDDNTLTVNINRLRKKLEEVELTDVIETRRRQGY 219


>gi|225377220|ref|ZP_03754441.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM
           16841]
 gi|225210924|gb|EEG93278.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM
           16841]
          Length = 232

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 7/197 (3%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           ++  E  ++L++    D   I   ++ K + +  L  I R  + VP++ ++    +   +
Sbjct: 35  YDGAEALDYLENGGNYD-GVILDIMMPKMDGITVLKTIRRHGNSVPVLLLTAKAEIDDRV 93

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI---RVFSDGRDPEVQG 144
           +  DSG DD + KP   +E+LAR+ A+ RR    ++N    G I   R       PE   
Sbjct: 94  EGLDSGADDYLPKPFSMKELLARIRAMTRRQTDTTDNVLTFGDIALNRSTYQLTGPE-NP 152

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           E   L  +E ++LE LM+N G+ +        I+G +D   E+NVV  +IS LRKKL + 
Sbjct: 153 EGIRLAGKEYQMLEMLMSNPGQVICPDLFMDKIWG-YDSEAEQNVVWVYISYLRKKLTSI 211

Query: 205 LGFDPVDSKRFLGYSID 221
                + + R LGYS++
Sbjct: 212 GSQVKIRAARGLGYSLE 228


>gi|190894846|ref|YP_001985139.1| putative two-component response regulator protein [Rhizobium etli
           CIAT 652]
 gi|190700507|gb|ACE94589.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
 gi|327189023|gb|EGE56209.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 222

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 4/157 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ ++ S++P+I ++   SL   +   DSG DD + KP    E+ AR+ A+ RR +  
Sbjct: 63  LKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQDR 122

Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   T    +FS G R   V GE   L  RE  +LE L+   G  V+KT +  +++G F
Sbjct: 123 ASSEITVGDLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKLGTTVSKTALSESVFG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D+  + + +E +I +LRKKL N      + + R LGY
Sbjct: 182 DDEADPSAIEIYIHRLRKKLENS--SVQIATLRGLGY 216


>gi|300024327|ref|YP_003756938.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526148|gb|ADJ24617.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 229

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 80/151 (52%), Gaps = 6/151 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           ++P++ +S   +    +D  ++G DD + KP H  E+ AR+ A+ RR   +++     G 
Sbjct: 84  KLPVLILSARGTWAEKVDGLNAGADDYITKPFHIPEVAARLKALIRRASGIASPVLSHGG 143

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I + +        GE   L  RE ++L Y M   G+ V++ ++   +Y L D + E N +
Sbjct: 144 ISLDTTSNRVCQNGESIELTARELKMLTYFMHRIGRIVSQAELVDHLYALED-SRESNTI 202

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E +IS+LR+    KLG D + + R LGY +D
Sbjct: 203 EVYISRLRR----KLGADVITTVRGLGYRMD 229


>gi|56962170|ref|YP_173893.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908405|dbj|BAD62932.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 222

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 2/161 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ ++    P+I ++    +   +   DSG +D + KP    E+LAR+  I+R  K +
Sbjct: 64  LRRLRKSKETTPVILLTAKGEVSDKVTGLDSGANDYMTKPFFIEELLARIRVIFRE-KTT 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN    G + +  D     V+G+   L ++E  +L YL+ NR   +++  I   ++G ++
Sbjct: 123 NNSLHWGELTMNPDTYQVIVKGQELGLTKKEYELLYYLLVNRNIALSRENIIENVWG-YE 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              + N+V+  I  +R+KL + +    + + R +GY I  N
Sbjct: 182 YYGDTNIVDVFIKNIRRKLEDVMDVRMIQTIRGIGYVIKDN 222


>gi|103486056|ref|YP_615617.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976133|gb|ABF52284.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 235

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L ++  A  Q P++ +S    + + +  F  G DD V KP H  E++AR+ A+ RR K  
Sbjct: 63  LKKLRTAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHRDELVARIHAVVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +  +TG + V  D +  EV      L  +E ++LE L   +G  + K    + +YG  
Sbjct: 123 SQSVIKTGKLAVNLDTKTVEVDSIRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGM 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD 208
           DE  E  +++  I KLRKKL    G D
Sbjct: 183 DEP-ELKIIDVFICKLRKKLALACGGD 208


>gi|62258001|gb|AAX77759.1| unknown protein [synthetic construct]
          Length = 264

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 31/240 (12%)

Query: 6   DDRALVK--DGYIALFGDDGVSLEGFNSLEFEE---------------WLQSSAREDVSA 48
           DD+ +++  D    L  DD   +  F   +FEE               +L ++   DV  
Sbjct: 20  DDKHMLEMSDNPKVLVADDDKKIAQFIKTKFEENGIDTTVAFDGKEALFLINTNNYDVIV 79

Query: 49  IE---AFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           I+    +L G     + L +I+R  +   P+I +S   S +  ++   SG DD + KP  
Sbjct: 80  IDWMMPYLDG-----ISLLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFS 134

Query: 105 HREILARVAAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
             E++ RV  +Y+R K       ++   G I +     +     E+  L +RE ++L  L
Sbjct: 135 IDELIIRVNILYKRTKQITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLL 194

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++ + V+KT I   ++  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 195 LKHKNEVVSKTMILKEVWD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 253


>gi|294101700|ref|YP_003553558.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
 gi|293616680|gb|ADE56834.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
          Length = 226

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 6/192 (3%)

Query: 19  FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIG 77
           F ++G S+E   +   EE L+ +   +   I   L+  G   LE+   +R++ + +P+I 
Sbjct: 20  FAENGFSVE--RAYTGEEGLEKAKNPECECIVLDLMLPGISGLEVLERLRSNGATLPIII 77

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSD 136
           ++   S+   ++  + G DD + KP   RE+LARV  + RR  ++ +N    G + +   
Sbjct: 78  LTAKDSVDEKVEGLNKGADDFLVKPFDFRELLARVRTLLRRTSELQHNLLHCGSMTIDPV 137

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R+  V   + PL RRE  ILE L+ +  +   + +I S ++    +    NVV+ HI  
Sbjct: 138 ARECRVDNTILPLRRREFDILELLLRHENQVFTREKIISQVWQKEYDGT-SNVVDVHIKY 196

Query: 197 LRKKLRNKLGFD 208
           LR KLR + G D
Sbjct: 197 LRDKLREQ-GLD 207


>gi|73661850|ref|YP_300631.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643287|sp|Q49ZT8|HSSR_STAS1 RecName: Full=Heme response regulator hssR
 gi|72494365|dbj|BAE17686.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 224

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 12/198 (6%)

Query: 34  FEEWLQSSAREDVSAIEA---------FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           FE  +QSSA   +S +E           ++GK     EL +I++    +P+I ++   +L
Sbjct: 26  FETIVQSSAENALSYLETHQVDIAIVDVMMGKMSG-FELCKILKEDFDIPVIMLTARDAL 84

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQ 143
                 + +G DD V KP   +E++ R+ A+ +R  V+ NN    G + +     + +  
Sbjct: 85  SDKEQAYLTGTDDYVTKPFEVKELMFRIKAVLKRYNVNINNEVSIGNLTLNQSYLEIQSS 144

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   LP +E ++L  L +N  +   +  +   I+G FD   +E  V+ HI +LRK+L  
Sbjct: 145 SKSMNLPNKEFQLLFLLASNPRQVFNRDALIEKIWG-FDYEGDERTVDVHIKRLRKRLEK 203

Query: 204 KLGFDPVDSKRFLGYSID 221
                 + + R LGY +D
Sbjct: 204 IDASVTIHTVRGLGYKVD 221


>gi|197303422|ref|ZP_03168461.1| hypothetical protein RUMLAC_02144 [Ruminococcus lactaris ATCC
           29176]
 gi|197297420|gb|EDY31981.1| hypothetical protein RUMLAC_02144 [Ruminococcus lactaris ATCC
           29176]
          Length = 220

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 85/155 (54%), Gaps = 6/155 (3%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128
           + +  ++ +S    +   ++  D+G +D + KP H +E+ AR+ ++ RR  +  +   + 
Sbjct: 65  NEETKVLILSARSQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFIQKDVCLSY 124

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-- 186
           G IR  +  R+    GE   L R+E  ILEY++ N+G+ V++ ++   ++   D +V+  
Sbjct: 125 GDIRFDTKKREACANGEPVSLTRKENGILEYMLLNQGRPVSQEELIEHVW---DASVDSF 181

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +  H+S LR+KL+  L +DP+ +K   GY ++
Sbjct: 182 SGSIRVHVSSLRRKLKAVLSYDPIVNKIGEGYRLE 216


>gi|241895300|ref|ZP_04782596.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241871606|gb|EER75357.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 231

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGP 130
           +P++ ++    +   +  FD G D+ + KP +  E+LAR+  + R   V   +   E G 
Sbjct: 77  LPILMLTAKGEIADKMQGFDLGADEYITKPFYKEELLARLKTLLRHTGVLGQDGALEVGN 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           ++++ D     V      L  RE  +L YL+ + G+ V K QIF  ++G FD      VV
Sbjct: 137 VQIYVDQHKVLVDDTEVSLQGREFGLLVYLVQHVGQIVTKDQIFDRLWG-FDSDTSLTVV 195

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E ++S LRK LR       + + R +GY+++
Sbjct: 196 EVYMSNLRKNLRQAEAQVNIKTLRNVGYTLN 226


>gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
 gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
          Length = 233

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 3/146 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R IR  S+VP++ ++     Q  L  FD GVD+ ++KP   + ++ARV AI RR  
Sbjct: 71  FDVAREIRETSKVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILRRSG 130

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V       E G IR+        V G    L  +E  +L Y M NRG  +++ +I ++++
Sbjct: 131 VEEQAKLLEAGGIRLDFVAHTVTVDGREIMLSAKEFELLAYFMENRGIALSREKILNSVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK 204
             +D   +   +++H+ KLR K+  K
Sbjct: 191 D-YDYFGDARTIDTHVKKLRAKIGEK 215


>gi|332652879|ref|ZP_08418624.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium
           D16]
 gi|332518025|gb|EGJ47628.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium
           D16]
          Length = 226

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 2/159 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + + + ++ ++ +S   S+   +   D+G +D + KP    E+ AR+ ++ RR  V 
Sbjct: 63  LREVRKVNQELKVLILSARGSVSDKVQGLDNGANDYLAKPFAFEELEARIRSLLRRSFVQ 122

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N       I + +  R   V GE  PL ++E  ILEY M +  K +++ ++   I+ + 
Sbjct: 123 ENTVLVWNAISLDTAKRIACVNGEQIPLTKKELSILEYFMLHPTKVISQEELMEHIWNME 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   N V  HI+ LRKKL+  L +DP+ ++   GY +
Sbjct: 183 IDSFS-NAVRVHIATLRKKLKQALAYDPIVTRIGQGYCL 220


>gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 229

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 4/149 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P+I ++     Q  ++  ++G DD + KP H  E+ AR+ A+ RR    S    E GP
Sbjct: 72  EFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALLRRAAGHSKPVLEFGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
           I++ + GR      E   L   E R  EYL+ N GK ++K+++   +Y   FD   + NV
Sbjct: 132 IKMDTTGRVVYRHNEPVKLTSYEYRTFEYLVLNAGKTISKSELTEHLYHQDFDR--DSNV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +E  I +LR+KL       P+ + R LGY
Sbjct: 190 LEVFIRRLRQKLDPDQDLQPITTVRGLGY 218


>gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 227

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +++   A    +G +++     E   ++      DV+ I+  L       +
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVAIIDLGL--PKMSGM 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R   +  P++ ++   S Q  ++    G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  ELIKALRDEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRRAA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPVLECGPVALDLAAQTVTVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             FD   + NV+E  I +LRKKL  +    P+++ R  GY
Sbjct: 181 QDFDR--DSNVLEVFIGRLRKKLDPEGELKPIETVRGRGY 218


>gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
 gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 6/173 (3%)

Query: 56  KGEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +G   +E+ R +R     + VP+I ++   +    +   D+G DD + KP   RE+LARV
Sbjct: 58  EGTSGIEVCRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARV 117

Query: 113 AAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           AA+ RR++  ++    + G I +         +GE   L   E R+L++ M + G+  ++
Sbjct: 118 AAVMRRIRPALAGETIQAGDIVLDPVAHKVSRRGETLQLGPTEYRLLKFFMESPGRVFSR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            Q+   ++G   + +E   V+ HI +LRK +      DP+ + R  GY+++ N
Sbjct: 178 GQLLDGVWGTGSD-IELRTVDVHIRRLRKAIDVPGADDPIRTVRSAGYALETN 229


>gi|71736826|ref|YP_275872.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485923|ref|ZP_05639964.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289627099|ref|ZP_06460053.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648110|ref|ZP_06479453.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487951|ref|ZP_07005990.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557379|gb|AAZ36590.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157502|gb|EFH98583.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866032|gb|EGH00741.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330986733|gb|EGH84836.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 225

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL + + F P+++ R +GY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGY 218


>gi|228990099|ref|ZP_04150071.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
 gi|228769627|gb|EEM18218.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
          Length = 228

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 70  FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 129

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + + N      I V  D     V     PL  +E  IL+ L+ N+ K + +  I   ++
Sbjct: 130 DQSTENHLFFKEIHVDCDAYKVYVNEVEIPLTAKEFEILQLLLQNKKKVITRESIVEKVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   E  ++++HI  +RK    KL    + + + +GY ID
Sbjct: 190 G-YEYHGETRMIDTHIKNIRK----KLDISYIKTVKGIGYKID 227


>gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 234

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD + KP   RE+LARV A+ RR ++ 
Sbjct: 63  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQMV 122

Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  E+         G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 123 ADATESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP   K     R LGY ID
Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|256827469|ref|YP_003151428.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583612|gb|ACU94746.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 225

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 7/167 (4%)

Query: 45  DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D+  ++  L G  G +VLE  R  R  +  P++ ++    +   L  F +G DD + KP 
Sbjct: 45  DLIVLDLMLPGMNGYEVLEWLRADRVMT--PVLILTALRGIDERLRGFRAGADDFLTKPF 102

Query: 104 HHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
              E+L R+ AI RR    V         + ++ D     +QGE   L  R+  +LE+L+
Sbjct: 103 AKDELLLRIEAILRRSMNLVEKREFSFKDLVLYPDSHTACIQGEEIELKGRQYDVLEFLV 162

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           + +G+ ++K+QIF  ++G   +    NVVE ++S +RK+L+   G+D
Sbjct: 163 SRQGQLISKSQIFDKVWGFMSDT-STNVVEVYMSAIRKQLK-PYGYD 207


>gi|46201677|ref|ZP_00054581.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 234

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 2/145 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R+  A  + P++ +S        +    SG DD + KP    E++AR+ AI RR K  
Sbjct: 59  LRRLRSARIETPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSKGH 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  +TG + V  D R   V G+   L  +E  ILE L   +G+ + K Q  + +YG  
Sbjct: 119 AQSVIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYGGI 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206
           DE  E  +++  I KLRKKL    G
Sbjct: 179 DEP-ELKIIDVFICKLRKKLATATG 202


>gi|163857004|ref|YP_001631302.1| two-component response regulatory protein [Bordetella petrii DSM
           12804]
 gi|163260732|emb|CAP43034.1| two-component response regulatory protein [Bordetella petrii]
          Length = 223

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   L++ R +R   +QVP++ ++    L+  +   D+G DD V KP    E+ ARV A 
Sbjct: 56  GRSGLDVLRQLRQDGNQVPVLIVTARDGLEDRVAGLDAGADDYVTKPFDLPELAARVRAF 115

Query: 116 -YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             RR   +    E G +   + GR+    G+   L  RE  +LE LMA  G+ V K QI 
Sbjct: 116 GRRRAGQAQPLIEAGTLTFDTVGREVRANGQRLSLSVRELSVLEMLMARAGRVVTKRQIV 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +++   +D    EN VE ++ +LRK+L        + + R  GY +D
Sbjct: 176 NSLSA-WDADFSENAVEVYVYRLRKRLEGTGA--SIQTVRGFGYMLD 219


>gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 256

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + +
Sbjct: 85  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 144

Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + T         G I +        V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 145 AQASGTVDDDIPLVCGDIVMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 204

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP   K     R LGY ID
Sbjct: 205 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 252


>gi|317180700|dbj|BAJ58486.1| putative transcriptional regulator [Helicobacter pylori F32]
          Length = 223

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55
           M VL+ ++  V  G I    + G++++GF      SLE  E+L      D+   +  ++ 
Sbjct: 1   MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +  + RI   HS + ++  SD P+ +  +  F+ G DD + KP  +R I A +A I
Sbjct: 52  DKNALSFVSRIKEKHSSIVILVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALIARI 109

Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             RL+   +N  E G + +  D       GR+ EV+G+ F        +L +L  +R + 
Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+K Q+  AI+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212


>gi|319406896|emb|CBI80531.1| two-component system regulatory protein [Bartonella sp. 1-1C]
          Length = 222

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E++AR+ A+ RR    + N    G + + +      ++G++  L
Sbjct: 91  IDAGADDYVVKPFHLEEVMARLRALIRRSTGHATNTLSCGEVLLDTKTSRVFIEGQLIKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM +  K V+KT++   +Y   FD+  + N +E  I +LRK    KLG D
Sbjct: 151 TSYEFRLLSYLMHHSDKVVSKTELIEHLYDQDFDK--DSNTIEVFIRRLRK----KLGVD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY I
Sbjct: 205 SIETVRGLGYRI 216


>gi|332673251|gb|AEE70068.1| DNA-binding response regulator [Helicobacter pylori 83]
          Length = 223

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55
           M VL+ ++  V  G I    + G++++GF      SLE  E+L      D+   +  ++ 
Sbjct: 1   MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +  + RI   HS + ++  SD P+ +  +  F+ G DD + KP  +R I A VA I
Sbjct: 52  DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109

Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             RL+   +N  E G + +  D       GR+ EV+G+ F        +L +L  +R + 
Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+K Q+  AI+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETIRRRGY 212


>gi|331082730|ref|ZP_08331853.1| hypothetical protein HMPREF0992_00777 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400349|gb|EGG79991.1| hypothetical protein HMPREF0992_00777 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 222

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++++   AL  ++G   E    + FE+  Q  ARE    +   +I  G    
Sbjct: 4   IIVIEDDKVLREALTALLRENGY--EVCQIVRFEKTEQQIAREKADLVLLDIILPGTNGQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S+VP+I ++        +     G DD + KP +   +L ++ A++RRLK 
Sbjct: 62  EILRNLRRISEVPVIMLTSKTGETDEILAMSYGADDYITKPYNPALLLLKIEALFRRLKP 121

Query: 122 SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + E     VF +     +  Q     L + E  I  YL+ NRGK V++ ++   ++ 
Sbjct: 122 QEKQEELEYRGVFLNPLKSTLRYQDREIVLSKNEISIFHYLLKNRGKIVSRDELMDYLWE 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             D  V++N +  +I++LRKKL        ++++R  GY
Sbjct: 182 CND-FVDDNTLTVNINRLRKKLEEIELTGVIETRRRQGY 219


>gi|257868021|ref|ZP_05647674.1| DNA binding response regulator [Enterococcus casseliflavus EC30]
 gi|257874351|ref|ZP_05654004.1| DNA binding response regulator [Enterococcus casseliflavus EC10]
 gi|257802104|gb|EEV31007.1| DNA binding response regulator [Enterococcus casseliflavus EC30]
 gi|257808515|gb|EEV37337.1| DNA binding response regulator [Enterococcus casseliflavus EC10]
          Length = 230

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  S+VP+I +S        +   + G DD + KP     +LA++ A+ RR  + S+ +
Sbjct: 67  IRKKSEVPIIFLSSMDQQMNQIMAMNMGADDYLTKPFDLAFVLAKIQALLRRSYQYSHQQ 126

Query: 126 A---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           A   E G +  +      + QGE  PL   E RIL  L+ +RGK VAK  I   ++   +
Sbjct: 127 ALTFEIGQVTFYPTENVLKKQGEQLPLSPNEARILSLLLQHRGKIVAKETIIEMLWN-SE 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E ++ N +  ++++LRKKL      D + + +  GY I+
Sbjct: 186 EFIDNNTLAVNMTRLRKKLSQIELSDLIQTVKNKGYLIE 224


>gi|206891181|ref|YP_002249203.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743119|gb|ACI22176.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 227

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 16/202 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LID   L   G+ A + DDG  +         +W + +   D+  ++  L  K     E
Sbjct: 17  LLID--YLKASGFEAFWLDDGARVI--------QWTKENC-PDLIILDVMLPNKDG--FE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR+ S +P+I ++        +   + G DD + KP   RE++ARV AI+RR+   
Sbjct: 64  ICREIRSFSTIPIIMVTARIEEVDRIVGLELGADDYICKPFSPRELIARVKAIFRRMNFK 123

Query: 123 NNRAETGPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++A + P   + D    +  + G+   L   E R+L+ L++N G+   ++Q+   +Y  
Sbjct: 124 DDKAISFPSGFYLDENSLKAFLNGQELHLTTVEFRLLKILISNPGRVFTRSQLMDIMYP- 182

Query: 181 FDEAVEENVVESHISKLRKKLR 202
            +  V +  ++SHI KLRKK++
Sbjct: 183 DNRIVSDRTIDSHIKKLRKKIK 204


>gi|56708585|ref|YP_170481.1| two-component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671056|ref|YP_667613.1| two-component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118498037|ref|YP_899087.1| two-component response regulator [Francisella tularensis subsp.
           novicida U112]
 gi|134301461|ref|YP_001121429.1| two-component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931186|ref|YP_001891170.1| two-component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194323262|ref|ZP_03057046.1| response regulator receiver domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|224457767|ref|ZP_03666240.1| two-component response regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254368789|ref|ZP_04984802.1| two-component response regulator [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254371214|ref|ZP_04987216.1| two-component response regulator [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254373393|ref|ZP_04988881.1| two-component response regulator [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374856|ref|ZP_04990337.1| hypothetical protein FTDG_01033 [Francisella novicida GA99-3548]
 gi|254875447|ref|ZP_05248157.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|56605077|emb|CAG46190.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321389|emb|CAL09573.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423943|gb|ABK90333.1| two-component response regulator [Francisella novicida U112]
 gi|134049238|gb|ABO46309.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569454|gb|EDN35108.1| two-component response regulator [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151571119|gb|EDN36773.1| two-component response regulator [Francisella novicida GA99-3549]
 gi|151572575|gb|EDN38229.1| hypothetical protein FTDG_01033 [Francisella novicida GA99-3548]
 gi|157121710|gb|EDO65880.1| two-component response regulator [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712095|gb|ACD30392.1| two-component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194322626|gb|EDX20106.1| response regulator receiver domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|254841446|gb|EET19882.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159813|gb|ADA79204.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332678759|gb|AEE87888.1| DNA-binding response regulator [Francisella cf. novicida Fx1]
          Length = 228

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR    +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+
Sbjct: 60  LEVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRI 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + ++    IR      +P  +     G + P+ ++E  +L  L+ N G+ V KTQ+ 
Sbjct: 120 DTRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             +Y   D+ ++ N +E H+  LRKK+
Sbjct: 180 EEVYS-TDKEMDTNTLEVHMHNLRKKI 205


>gi|87121223|ref|ZP_01077113.1| two-component system regulatory protein [Marinomonas sp. MED121]
 gi|86163380|gb|EAQ64655.1| two-component system regulatory protein [Marinomonas sp. MED121]
          Length = 221

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 5/164 (3%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   L++ + +RA + + P++ ++    +   +   D+G DD + KP + RE+ AR  A+
Sbjct: 56  GMSGLQILKQLRARANETPVLILTARDQMDDRVILLDAGADDYLTKPFNFRELEARCRAL 115

Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR    + N  E G + +  D R   V+GE+  +  RE R+LE  + + G+ ++K +I 
Sbjct: 116 LRRHHGYAANVTEHGNLTINRDARQVMVKGEIQSITNREFRLLEIFLGHLGRVLSKDEIT 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++  FDE    N +E ++ +LRKKL +      + + R LGY
Sbjct: 176 EHLFN-FDETPGPNAIELYVGRLRKKLVDS--SLTISTLRGLGY 216


>gi|229175730|ref|ZP_04303236.1| Two-component response regulator vanRB [Bacillus cereus MM3]
 gi|228607681|gb|EEK64997.1| Two-component response regulator vanRB [Bacillus cereus MM3]
          Length = 216

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR    
Sbjct: 58  ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 117

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A    +   + + S      V G    L  +E  IL  L+ NRGK ++++ + + ++
Sbjct: 118 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEILYTLLQNRGKVLSRSDLLNKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +  V+++HI  LRK    KLG   + + + +GY I+
Sbjct: 178 G-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 215


>gi|330896968|gb|EGH28534.1| two component transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330977797|gb|EGH77700.1| two component transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 227

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G +A     G++L+   S      +  +A+ DV  ++  L    E  + 
Sbjct: 4   LLCEDDELIASGIVAGLHAQGLNLDRVGSASAAHAILDAAQFDVMILDLGL--PDEDGIS 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R+    +P++ ++    +   +    +G DD + KP   RE+ AR+  + RR+  
Sbjct: 62  LLRSLRSRGHNIPVLILTARDDVDDRVKGLHAGADDYMVKPFDLRELFARLHTLVRRVAG 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  E G +      R+  + G    L RRE+ +L  L+ N G+ ++  Q+  ++YG 
Sbjct: 122 RTVNHIEHGILTYDPSTRETWLSGTAIDLSRREQAVLLALLNNPGRVLSLEQLKDSVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+    KLG   +++ R  GY +
Sbjct: 182 TDE-VESNALNVHIFHLRR----KLGGQIIETVRGSGYRL 216


>gi|315123018|ref|YP_004065024.1| response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016778|gb|ADT70115.1| response regulator [Pseudoalteromonas sp. SM9913]
          Length = 219

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D  LV  G       +G S+E   +++       S   ++  ++  L  G G ++
Sbjct: 3   LLLVEDDHLVAQGLCRSLRQEGYSVEHSATVKHALQCLGSGEIELVILDLGLPDGDGSQI 62

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   + I+A  +V P++ ++   S+   +   D G DD + KP    E+ AR+    RR+
Sbjct: 63  L---KHIKAQKKVIPVVILTARSSIDDKVQGLDMGADDYLAKPFEPAELFARLRVASRRV 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  ++  + G + + +      +  E+  LPR+E  +L+ L+ N+G+  +K Q+ + +Y
Sbjct: 120 NQAQSSLLQCGDVTMDTSAHSVTLNDELLSLPRKEYMLLKALLENQGRVQSKQQLENKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + E V  N +E HI  LRKK  +    D + + R +GY +
Sbjct: 180 Q-WGEEVGSNTIEVHIHHLRKKFPS----DFIKTLRGIGYVV 216


>gi|260777188|ref|ZP_05886082.1| two-component system response regulator QseB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260606854|gb|EEX33128.1| two-component system response regulator QseB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 218

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 6/150 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           + P++ +S    L   +   + G DD + KP    E+LAR+ A+ RR   ++++    G 
Sbjct: 72  KTPVLILSARDELNDRVYGLNHGADDYLVKPFQLEELLARMGALIRRSAGMADDTIVVGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  +     V GE   L   E +IL YL+ N G+ ++KTQI   ++G +DE+   N +
Sbjct: 132 VSVSVNSHKVAVAGECINLTPNEFKILLYLVTNAGRVLSKTQILQNMHG-WDESAGLNSI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E HI  LRKK+        +++ R +GY I
Sbjct: 191 EVHIHNLRKKMPK----GTIENIRGVGYII 216


>gi|315497642|ref|YP_004086446.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315415654|gb|ADU12295.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 233

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R      P++ +S    ++T +     G DD + KP H  E++AR+ A+ RR 
Sbjct: 60  LEVLRQLRVGKVNTPVMILSGTSEIETKVKTLGGGADDYMTKPFHKDELIARIHAVVRRS 119

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K  + +  +TG I V  D +  EV G    L  +E  +LE L   +G  + K    + +Y
Sbjct: 120 KGHAQSVIKTGDIIVNLDAKTVEVAGNRVHLTGKEYEMLELLSLRKGTTLTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G  DE  E  +++  I KLRKKL
Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKL 201


>gi|158530295|gb|ABW71856.1| putative regulator [Streptomyces refuineus subsp. thermotolerans]
          Length = 273

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR  S +P+IG +   +L+  L   ++G DD V KP H RE++AR+ A+ RR +
Sbjct: 69  LTLCRQIRNASDIPMIGFACSAALERVL-ALEAGCDDCVVKPYHSRELVARLGALLRRAR 127

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V +  A T G ++++   R   V+       R+E  +L  L A   K  ++ ++   ++ 
Sbjct: 128 VLSPPALTVGKLQIYPTLRQVRVENRPIETTRKEFELLHLLAAEPDKLFSRAELLRRVWD 187

Query: 180 LFDEAVE-----ENVVESHISKLRKKL 201
             D + E        +++H+S LRKKL
Sbjct: 188 YDDVSAEVTSLASRTIDTHVSSLRKKL 214


>gi|114707174|ref|ZP_01440072.1| response regulator,controls chromosomal replication initiation
           protein [Fulvimarina pelagi HTCC2506]
 gi|114537370|gb|EAU40496.1| response regulator,controls chromosomal replication initiation
           protein [Fulvimarina pelagi HTCC2506]
          Length = 230

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E  +LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVINTGDLTVNLDAKTVEVGGQRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206
             DE  E  +++  I KLRKKL N  G
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANATG 206


>gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 229

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 25/205 (12%)

Query: 34  FEEWLQSSAREDVSAIEAF--------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           FE  + +   E VS  E          L+  G    E+ + IRA S VP+I ++   S  
Sbjct: 26  FEASIVNDGSEAVSTFERVNPDIVLLDLMLPGVSGTEICKTIRAKSAVPVIMVTARDSEI 85

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-------AETGPIRVFSDGR 138
             +   + G DD V KP   RE++AR+ A+ RR  V  +         E GP+R+     
Sbjct: 86  DKVVGLELGADDYVTKPYSARELIARIRAVLRRGGVVADDEDAAIGVVEVGPVRMDVQRH 145

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G    LP +E  +LEYL+ N G+ + ++Q+   ++G  D   +   ++ H+    
Sbjct: 146 TVTVAGTEVTLPLKEFDLLEYLLRNSGRVLTRSQLIDRVWG-ADYVGDTKTLDVHV---- 200

Query: 199 KKLRNKLGFDPVDSK-----RFLGY 218
           K+LR+K+  DP   +     R LGY
Sbjct: 201 KRLRSKVEPDPSQPRHLITVRGLGY 225


>gi|210633428|ref|ZP_03297776.1| hypothetical protein COLSTE_01689 [Collinsella stercoris DSM 13279]
 gi|210159152|gb|EEA90123.1| hypothetical protein COLSTE_01689 [Collinsella stercoris DSM 13279]
          Length = 229

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEA-FLIGKGE 58
            +L++D  L+ D    L    G S++  ++ +   E  + S        I     + +G 
Sbjct: 5   ILLVEDDPLIVDSLTELLAGSGYSVDTADTQQRAIELAVDSGGAHPYQLILLDVTLRQGN 64

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
                  +  A   VP+I ++       T+     G DD V KP   RE+LAR+AA  RR
Sbjct: 65  GFAVCAAVKEATPDVPVIFLTASDDEFNTVTGLTMGADDYVAKPFRPRELLARIAATIRR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S      GPIR+ +D    E +G    L   E R+L     N GK + + +I  A++
Sbjct: 125 SQPSRRVVSLGPIRIDTDRAYVEREGAELTLSALEYRLLLLFATNPGKLITRDKIRDALW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
                 +EEN +  +I    K+LR+K+  DP     + + R LGY
Sbjct: 185 DSAGTYIEENTLSVYI----KRLRDKIEGDPSRPELIQTVRGLGY 225


>gi|295108701|emb|CBL22654.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 227

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 12/151 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE+VL     I+    VP+IG+S     ++ +    +G DD V KP    E+LAR+  I 
Sbjct: 61  GEQVLAE---IKKTKNVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETIL 117

Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR+      SN+    G + + + G +  ++ +  PL + E  IL+ LM +  +   K  
Sbjct: 118 RRIYENQYTSNSLLCCGDLNLDTIGMEATLKKQKLPLTKNEFAILKMLMEHPQQVFTKDM 177

Query: 173 IFSAIYGLFDEAVE--ENVVESHISKLRKKL 201
           I+     L++EA+E  EN +  HIS LRKK+
Sbjct: 178 IYEQ---LWNEALEGSENAINVHISNLRKKI 205


>gi|54112871|gb|AAV29069.1| NT02FT1860 [synthetic construct]
          Length = 228

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR    +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+
Sbjct: 60  LEVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRI 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + ++    IR      +P  +     G + P+ ++E  +L  L+ N G+ V KTQ+ 
Sbjct: 120 DTRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             +Y   D+ ++ N +E H+  LRKK+
Sbjct: 180 EEVYS-TDKEMDTNTLEVHMHNLRKKI 205


>gi|37675773|ref|NP_936169.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
 gi|37200312|dbj|BAC96139.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
          Length = 218

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +LI+D  L+    +      G +++    LE    + S+ + ED +A+   L       
Sbjct: 3   LLLIEDDTLLGQSMVTSLSRHGYTVDW---LEKGSGVTSALKTEDFTAVILDLTLPDIDG 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R IR+    +P++ ++    ++  +   D G DD + KP    E+LAR+  + RR 
Sbjct: 60  LDVLRNIRSAGFNLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQ 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             S     E G + +    +    Q  V  L R E +IL  LM N G+ ++K Q+  +++
Sbjct: 120 SGSATEVIEVGELNLSLSDQSIRYQEAVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLH 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D++  +N +E HI  LRKK  N     P+ + R +GY I+
Sbjct: 180 G-WDDSASDNAIEVHIHNLRKKAPNV----PIKNIRGVGYIIE 217


>gi|148557747|ref|YP_001265329.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502937|gb|ABQ71191.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 231

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L ++  A  Q P++ +S    + + +     G DD V KP H  E++AR+ AI RR K  
Sbjct: 63  LKKLRGAKVQTPVMILSGIGEMDSKVRALGFGADDYVTKPFHREELVARIHAIVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +   TG + V  D +  EV G    L  +E  +LE L   +G  + K    + +YG  
Sbjct: 123 SQSVIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE  E  +++  I KLRKKL
Sbjct: 183 DEP-ELKIIDVFICKLRKKL 201


>gi|209965047|ref|YP_002297962.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum
           SW]
 gi|209958513|gb|ACI99149.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum
           SW]
          Length = 234

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R+  A    P++ +S    L   +     G DD + KP   RE++AR+ AI RR K  
Sbjct: 63  LRRLRSARVTTPILILSGLSELDHKIKGLGVGADDYLTKPFDKRELVARLQAIVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S++   TG + V  D R  EV G+   L  +E  ILE L   +G  + K    + +YG  
Sbjct: 123 SDSIIRTGKLTVNLDARTVEVDGQPLHLTGKEYGILELLSLRKGTTLTKEMFLNHLYGGM 182

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE  E  +++  + KLRKKL
Sbjct: 183 DEP-ELKIIDVFVCKLRKKL 201


>gi|88797980|ref|ZP_01113567.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
 gi|88779177|gb|EAR10365.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
          Length = 225

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 3/160 (1%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +RA  Q  P+I ++     +  +D  +SG DD + KP    E+LARV A+ RR 
Sbjct: 60  LDVIRELRAAGQDYPIIVLTARGHWRDKVDGLESGADDYLAKPFIFDELLARVKALLRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + ++++    G   + +  +   V G    L   E   LEYLM ++ K V+KT++   +Y
Sbjct: 120 VGMASSTLTIGLYELDTSAKSVRVDGRSVELTSYEYNTLEYLMTHKNKVVSKTELTEHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D   + NV+E  I +LRKKL      +P+ ++R LGY
Sbjct: 180 EQ-DYDRDSNVIEVFIRRLRKKLDPDGERNPILTQRGLGY 218


>gi|319796546|ref|YP_004158186.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315599009|gb|ADU40075.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 224

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +E+ + +RA  SQ+P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  IEILKRLRARGSQLPVLVLTAADSVEERVKGLDHGADDYMAKPFSLQELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  ++N    GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGATSNAIRHGPLVYDQAGRVATIDGKMIELSARELGLLEVLLQRAGRLVSKDQLVDRLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 E-WGEEVSLNAIEVYIHRLRKKIEK--GPVRIATVRGLGYCLE 220


>gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 228

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 16/171 (9%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EICKALRTRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGD 121

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +     E GP+R+  +     V GE   LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 122 LAEEDLDIGILEAGPVRMDVERHIVAVNGEQITLPLKEFDLLEYLLRNAGRVLTRGQLID 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
            ++G  D   +   ++ H+    K+LR+K+  DP + K     R LGY ++
Sbjct: 182 RVWG-ADYVGDTKTLDVHV----KRLRSKIEPDPANPKHLITVRGLGYKLE 227


>gi|148556346|ref|YP_001263928.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501536|gb|ABQ69790.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 220

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 10/162 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R  R     P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR    
Sbjct: 63  LDRWRREGKDTPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS-G 121

Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           N  +E   G +R+ +      + GE   L  +E ++L YL+ ++GK V++T++   IY  
Sbjct: 122 NASSELIAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQ 181

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   + N +E  ++++RK    KLG D + + R LGYS+D
Sbjct: 182 DFDR--DSNTIEVFVTRIRK----KLGQDVITTIRGLGYSLD 217


>gi|15889704|ref|NP_355385.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15157614|gb|AAK88170.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 234

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206
             DE  E  +++  I KLRKKL N  G
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206


>gi|302187207|ref|ZP_07263880.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|330974381|gb|EGH74447.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 225

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL + + F P+++ R +GY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGY 218


>gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 228

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 99/213 (46%), Gaps = 17/213 (7%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +GY     +DG S            L+ + + D+  +   ++  G   +E+ R IR  SQ
Sbjct: 24  EGYTVDIANDGRS-----------GLEKALKSDIDLVLLDVMLPGLSGIEVCRRIRMESQ 72

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           VP+I ++    +   +   D G DD + KP    E+LAR+     R   S+  A+     
Sbjct: 73  VPIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVALSRHSKSSAEAKQDVLT 132

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G +++           E   L ++E  +LEYLM N+   + + Q+ + ++  ++   + 
Sbjct: 133 HGELKLNLTSHSANYGEEDLTLTKKEYELLEYLMRNKNIALTREQLLNNVWD-YEYFGDT 191

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           NVV+ +I  LR+K+ +K G   + + R +GY I
Sbjct: 192 NVVDVYIRYLRQKIDDKYGVHLISTVRGVGYII 224


>gi|15966471|ref|NP_386824.1| response regulator,controls chromosomal replication initiation
           protein [Sinorhizobium meliloti 1021]
 gi|307300492|ref|ZP_07580272.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307318357|ref|ZP_07597792.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|9858148|gb|AAG01017.1|AF288464_1 response regulator CtrA [Sinorhizobium meliloti]
 gi|15075742|emb|CAC47297.1| Cell cycle transcriptional regulator CtrA, autoregulated, response
           regulator [Sinorhizobium meliloti 1021]
 gi|306896039|gb|EFN26790.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306904658|gb|EFN35242.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 233

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206
             DE  E  +++  I KLRKKL N  G
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206


>gi|330718114|ref|ZP_08312714.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 228

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 3/132 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETG 129
           + P++ ++   SL   ++ F+ G DD + KP +  E+L RV A+ RR  V   +N  E G
Sbjct: 75  ETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRSGVFSEDNTIEVG 134

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +  + R  +V G+   L  +E  IL YL  N+   + + QIF  ++G+ D     NV
Sbjct: 135 DVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIITREQIFDRVWGI-DSDTTINV 193

Query: 190 VESHISKLRKKL 201
           V  +++ LR+KL
Sbjct: 194 VNIYLNNLRRKL 205


>gi|221201787|ref|ZP_03574824.1| DNA-binding response regulator TctD [Burkholderia multivorans
           CGD2M]
 gi|221207708|ref|ZP_03580716.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2]
 gi|221214547|ref|ZP_03587517.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1]
 gi|221165437|gb|EED97913.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1]
 gi|221172554|gb|EEE04993.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2]
 gi|221178207|gb|EEE10617.1| DNA-binding response regulator TctD [Burkholderia multivorans
           CGD2M]
          Length = 225

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A +    + L   +  +++     E  + +  + R D   ++  L G  G++V
Sbjct: 3   LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L   R+ R +  VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR  
Sbjct: 63  L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V + +   G +      R+         L RRE  ILE LM  + K V+K ++  +++ 
Sbjct: 121 GVGSTQLVCGDLVYAFGTREFRCGDAPLMLRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
           L DE    + ++ +I +LRK L
Sbjct: 181 LDDEP-SADAIDIYIHRLRKHL 201


>gi|62261777|gb|AAX78015.1| unknown protein [synthetic construct]
          Length = 263

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR    +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+
Sbjct: 86  LEVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRI 145

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + ++    IR      +P  +     G + P+ ++E  +L  L+ N G+ V KTQ+ 
Sbjct: 146 DTRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLL 205

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             +Y   D+ ++ N +E H+  LRKK+
Sbjct: 206 EEVYST-DKEMDTNTLEVHMHNLRKKI 231


>gi|325293784|ref|YP_004279648.1| cell cycle transcriptional regulator ctrA [Agrobacterium sp. H13-3]
 gi|325061637|gb|ADY65328.1| cell cycle transcriptional regulator ctrA [Agrobacterium sp. H13-3]
          Length = 234

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206
             DE  E  +++  I KLRKKL N  G
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206


>gi|153811804|ref|ZP_01964472.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174]
 gi|149832207|gb|EDM87292.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174]
          Length = 227

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 102/208 (49%), Gaps = 15/208 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            +++DD   + D  +     +G ++   ++  E   +L+   + ++  ++  L G  GE+
Sbjct: 5   ILIVDDDMAINDMLVKYLRKNGYITYSAYSGTEALLFLEKQ-KVNLIILDLMLPGLSGEQ 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           VL     I+    VP+IG+S     ++ +    +G DD V KP    E+LAR+  I RR+
Sbjct: 64  VLAE---IKKTKNVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRI 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 SN+    G + + + G +  ++ +  PL + E  IL+ LM +  +   K  I+ 
Sbjct: 121 YENQYTSNSLLCCGDLNLDTIGMEATLKNQKLPLTKNEFAILKMLMEHPQQVFTKDMIYE 180

Query: 176 AIYGLFDEAVE--ENVVESHISKLRKKL 201
               L++E +E  EN +  HIS LRKK+
Sbjct: 181 Q---LWNETLEGTENAINVHISNLRKKI 205


>gi|260431669|ref|ZP_05785640.1| transcriptional regulatory protein TctD [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415497|gb|EEX08756.1| transcriptional regulatory protein TctD [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 222

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 5/169 (2%)

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   LE+ R +RA     P+I ++    L   +   DSG DD + KP    E+ AR+ A+
Sbjct: 56  GTDGLEVLRAMRARGDGTPVILLTARSELSDRVKGLDSGADDYLVKPFEMDELEARIRAL 115

Query: 116 YRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR  +     +T G +      R    +G    +PRRE  +LE L+   G+ V+K Q+ 
Sbjct: 116 SRRKNLDFGAVQTIGALAFDRATRQVLAEGAPLDIPRRETAVLECLLDRAGRIVSKAQLT 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +YG+  + V++  +E H+S+LRK+L    G   + + R LGY ++  
Sbjct: 176 DHVYGVGAD-VDDTAIEPHVSRLRKRLAAH-GV-VIKTARGLGYMLETT 221


>gi|239818155|ref|YP_002947065.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239804732|gb|ACS21799.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 223

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +E+ + +RA  SQ+P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  IEILKRLRARGSQLPVLVLTAADSVEERVKGLDHGADDYMAKPFSLQELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  ++N    GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGATSNTIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 E-WGEEVSLNAIEVYIHRLRKKIEK--GPVRIATVRGLGYCLE 220


>gi|170756456|ref|YP_001779877.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169121668|gb|ACA45504.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 233

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  ++ P+I +S   S +T L+  + G DD + KP    E++ARV +  RR L+ S + 
Sbjct: 70  IRKITKAPIIIVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVNSNLRRYLEFSTDE 129

Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   I  + D       ++ +V   +  L  RE  +LE L+ N  K  +K  IF +I+G
Sbjct: 130 EKKNNILSYKDITLNKESKEVKVAQTIVILTAREFAVLELLLNNPNKVYSKANIFESIWG 189

Query: 180 LFDEAV-EENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220
             +E + ++N V  H+S+LR KL   N  G D +++   +GY +
Sbjct: 190 --EEFLGDDNTVNVHVSRLRSKLSKANNNGEDYIETVWAMGYRL 231


>gi|150397803|ref|YP_001328270.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029318|gb|ABR61435.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 233

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206
             DE  E  +++  I KLRKKL N  G
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206


>gi|255292688|dbj|BAH89795.1| two component response regulator [uncultured bacterium]
          Length = 219

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 6/149 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPI 131
            P+I ++    +   ++  ++G DD + KP    E+ AR+ ++ RR   + N   T GP+
Sbjct: 73  TPVIILTALDQVSDRIEGLNAGADDYLVKPFDLSELSARIGSVARRYSGNPNPILTHGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    R     G   PL  RE  + E  +A  G+ ++K Q+   +Y  FD  VE N +E
Sbjct: 133 DIDLAARSVHRDGRHVPLTAREWALFEAFLARPGQLLSKAQLEEKLYA-FDAEVESNTIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            H+S+LRKKL + +    ++++R +GY +
Sbjct: 192 VHVSRLRKKLGSAI----IETERGMGYRL 216


>gi|83649045|ref|YP_437480.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83637088|gb|ABC33055.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 4/154 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ ++     Q  +   ++G DD + KP H  E++AR+ A+ RR    S+   + GP
Sbjct: 72  EFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSSGFSSPVIQAGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
           + + +  +  ++ G    L   E   LEYL+   G+ V+KT++   +Y   FD   + NV
Sbjct: 132 MTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYAQDFDR--DSNV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +E  I +LRKKL       P+ + R  GY  +W+
Sbjct: 190 IEVFIGRLRKKLDPDGVNKPITTLRGQGYRFNWS 223


>gi|75760136|ref|ZP_00740196.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218900181|ref|YP_002448592.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|74492373|gb|EAO55529.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218540655|gb|ACK93049.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 221

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR    
Sbjct: 63  ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 122

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++
Sbjct: 123 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +  V+++HI  LRK    KLG   + + + +GY I+
Sbjct: 183 G-YEHYGDVRVIDTHIKNLRK----KLGITYIKTVKGIGYKIE 220


>gi|15645657|ref|NP_207833.1| response regulator [Helicobacter pylori 26695]
 gi|2314190|gb|AAD08088.1| response regulator [Helicobacter pylori 26695]
          Length = 223

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55
           M VL+ ++  V  G I    + G++++GF      SLE  E+L      D+   +  ++ 
Sbjct: 1   MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +  + RI   HS + ++  SD P+ +  +  F+ G DD + KP  +R I A VA I
Sbjct: 52  DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109

Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             RL+   +N  E G + +  D       GR+ EV+G+ F        +L +L  +R + 
Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+K Q+  AI+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISMVETVRRRGY 212


>gi|228903532|ref|ZP_04067655.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228910870|ref|ZP_04074679.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228968144|ref|ZP_04129148.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791579|gb|EEM39177.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228848821|gb|EEM93666.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228856108|gb|EEN00645.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 216

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR    
Sbjct: 58  ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 117

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++
Sbjct: 118 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +  V+++HI  LRK    KLG   + + + +GY I+
Sbjct: 178 G-YEHYGDVRVIDTHIKNLRK----KLGITYIKTVKGIGYKIE 215


>gi|166032814|ref|ZP_02235643.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
           27755]
 gi|166027171|gb|EDR45928.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
           27755]
          Length = 235

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 24/214 (11%)

Query: 3   VLIDD----RALVKD-----GYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           +++DD    R LVKD     GY  L   DG+ ++E F            A +D++ I   
Sbjct: 17  LVVDDESRMRKLVKDFLEREGYQVLEAGDGLEAMEAF-----------YAEKDIALIILD 65

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           ++       +  R IR  S+VP+I ++     +  L  FD GVD+ ++KP   + ++ARV
Sbjct: 66  VMMPKMDGWQTCREIRQSSKVPIIMLTARGDERDELQGFDLGVDEYISKPFSPKILVARV 125

Query: 113 AAIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            A+ RR  V  ++   E G I V       +V G+   L  +E  +L Y + N+G  +++
Sbjct: 126 NALLRRSNVLDADEHVEAGGIVVDKAAHQVQVDGKDVELSYKEFELLSYFLENQGIALSR 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
            +I + ++  +D   +   +++H+ KLR KL  K
Sbjct: 186 EKILNNVWN-YDYFGDARTIDTHVKKLRSKLGEK 218


>gi|110802452|ref|YP_698343.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682953|gb|ABG86323.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 229

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR     P+I IS   +++  ++    G DD ++KP    E+LARV A+ RR K++N+  
Sbjct: 70  IRKIKNTPIIVISAKTTMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKITNSSE 129

Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               I+  +       R+ +V+GE   L  +E +ILE L+ N  K   K  +F  ++   
Sbjct: 130 GVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETVWE-- 187

Query: 182 DEAV-EENVVESHISKLRKKL 201
           +E + ++N +  HIS LR K+
Sbjct: 188 EEFLGDDNTINVHISNLRNKI 208


>gi|319791109|ref|YP_004152749.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315593572|gb|ADU34638.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 234

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 77/133 (57%), Gaps = 3/133 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           S++P++ ++D       ++  +SG DD ++KP+   E+ ARV A+ RR   + + +E   
Sbjct: 72  SRLPILFVTDSRDEADMVEALNSGADDFMDKPVRAGELEARVTALLRRSYPAKHESELVF 131

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           GP   +   R  +VQG++  L  RE  +  +L  N G+ +++  +  A++GL  EA+  +
Sbjct: 132 GPYHFYPPSRVLKVQGKLVELKNREYELALFLFQNLGRLLSREHLHEAVWGLGVEALSRS 191

Query: 189 VVESHISKLRKKL 201
            +++H+S+LR KL
Sbjct: 192 -LDTHVSRLRTKL 203


>gi|161523212|ref|YP_001578224.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348931|ref|YP_001944559.1| signal transduction response regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160340641|gb|ABX13727.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189332953|dbj|BAG42023.1| signal transduction response regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 225

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A +    + L   +  +++     E  + +  + R D   ++  L G  G++V
Sbjct: 3   LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L   R+ R +  VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR  
Sbjct: 63  L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V + +   G +      R+         L RRE  ILE LM  + K V+K ++  +++ 
Sbjct: 121 GVGSTQLVCGDLVYAFGTREFRCGDAPLVLRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
           L DE    + ++ +I +LRK L
Sbjct: 181 LDDEP-SADAIDIYIHRLRKHL 201


>gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 228

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 14/208 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58
            ++++D   + D    L G      EGF ++  +  L +     RE    +   ++  G 
Sbjct: 5   ILIVEDEEALSDPLAFLLGR-----EGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGM 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR
Sbjct: 60  SGMEVCRKLREVSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRR 119

Query: 119 LKVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                + A     + GP+R+  D     V GE   +P +E  +LE L+ N G+ + + Q+
Sbjct: 120 RSAETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G  D   +   ++ HI +LR K+
Sbjct: 180 IERVWG-ADYVGDTKTLDVHIKRLRSKI 206


>gi|15675198|ref|NP_269372.1| putative response regulator [Streptococcus pyogenes M1 GAS]
 gi|71910761|ref|YP_282311.1| transcriptional regulatory protein [Streptococcus pyogenes
           MGAS5005]
 gi|13622364|gb|AAK34093.1| putative response regulator [Streptococcus pyogenes M1 GAS]
 gi|71853543|gb|AAZ51566.1| transcriptional regulatory protein [Streptococcus pyogenes
           MGAS5005]
          Length = 224

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 2/153 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130
           ++P++ ++    L      F+ G DD + KP +  E+  R+ A+ +R  K ++     G 
Sbjct: 72  KIPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTGKFADKNISFGN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V    ++ +V+G+V  L  +E  +L YL+ N+   + KTQIF  ++G FD     +VV
Sbjct: 132 LVVDLARKEVKVEGKVVELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG-FDSDTTISVV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           E +ISK+RKKL+     + + + R +GY +  N
Sbjct: 191 EVYISKIRKKLKGTCFVNRLQTLRSVGYILKNN 223


>gi|307709530|ref|ZP_07645985.1| response regulator [Streptococcus mitis SK564]
 gi|307619723|gb|EFN98844.1| response regulator [Streptococcus mitis SK564]
          Length = 218

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 109/225 (48%), Gaps = 18/225 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R    
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118

Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +TG I  + D +         + GE  P+  +E  IL+YL+ N G+ + ++QI  A
Sbjct: 119 ---YDTGRIFSYKDAKVDFESYSASLAGEEVPINAKELEILDYLVKNEGRALTRSQIIDA 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   DE   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|18309930|ref|NP_561864.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144608|dbj|BAB80654.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 229

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR     P+I IS   +++  ++    G DD ++KP    E+LARV A+ RR K++N+  
Sbjct: 70  IRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKITNSSK 129

Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               I+  +       R+ +V+GE   L  +E +ILE L+ N  K   K  +F  ++   
Sbjct: 130 GVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETVWE-- 187

Query: 182 DEAV-EENVVESHISKLRKKL 201
           +E + ++N +  HIS LR K+
Sbjct: 188 EEFLGDDNTINVHISNLRNKI 208


>gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 227

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 14/208 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58
            ++++D   + D    L G      EGF ++  +  L +     RE    +   ++  G 
Sbjct: 4   ILIVEDEEALSDPLAFLLGR-----EGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR
Sbjct: 59  SGMEVCRKLREVSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRR 118

Query: 119 LKVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                + A     + GP+R+  D     V GE   +P +E  +LE L+ N G+ + + Q+
Sbjct: 119 RSAETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G  D   +   ++ HI +LR K+
Sbjct: 179 IERVWG-ADYVGDTKTLDVHIKRLRSKI 205


>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040570|gb|ACT57366.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 236

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 21/196 (10%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           Y+   G+DG+ L  F   EF+  +      D+   E        + L + +I       P
Sbjct: 28  YVTDLGEDGIELCKF--YEFDAIILDLGLTDIPGFEVL------RALRVAKI-----STP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130
           +  +S   S++  +    SG DD ++KP +  E++AR+ AI RR   S   A+    TG 
Sbjct: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  EVQG    L  +E +++E L   +   + K    + +Y   DE  E  ++
Sbjct: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP-EVKII 190

Query: 191 ESHISKLRKKLRNKLG 206
           +  I KLRKKL N  G
Sbjct: 191 DVFICKLRKKLSNAAG 206


>gi|167839173|ref|ZP_02465950.1| DNA-binding response regulator TctD [Burkholderia thailandensis
           MSMB43]
          Length = 223

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   + R E GP+   S  R   +  +   L  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL    G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVHRLRKKLEGS-GVAIV-TLRGLGYLLE 219


>gi|110798796|ref|YP_695638.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168206916|ref|ZP_02632921.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209543|ref|ZP_02635168.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213967|ref|ZP_02639592.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215963|ref|ZP_02641588.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|110673443|gb|ABG82430.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170661678|gb|EDT14361.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712327|gb|EDT24509.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714590|gb|EDT26772.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|182381636|gb|EDT79115.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 229

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR     P+I IS   +++  ++    G DD ++KP    E+LARV A+ RR K++N+  
Sbjct: 70  IRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKITNSSE 129

Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               I+  +       R+ +V+GE   L  +E +ILE L+ N  K   K  +F  ++   
Sbjct: 130 GVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETVWE-- 187

Query: 182 DEAV-EENVVESHISKLRKKL 201
           +E + ++N +  HIS LR K+
Sbjct: 188 EEFLGDDNTINVHISNLRNKI 208


>gi|307293225|ref|ZP_07573071.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306881291|gb|EFN12507.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 221

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 8/150 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132
           P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR    +++    G +R
Sbjct: 74  PVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRASGNASSELTAGDVR 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191
           + +      ++GE   L  +E ++L YL+ ++GK V++T++   IY   FD   + N +E
Sbjct: 134 LDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQDFDR--DSNTIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++++RK    KLG D + + R LGYS+D
Sbjct: 192 VFVTRIRK----KLGADVITTIRGLGYSLD 217


>gi|195978046|ref|YP_002123290.1| TCS transcriptional regulatory protein ciaR [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|225868625|ref|YP_002744573.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225870423|ref|YP_002746370.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195974751|gb|ACG62277.1| TCS transcriptional regulatory protein ciaR [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|225699827|emb|CAW93666.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|225701901|emb|CAW99401.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 224

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 86/153 (56%), Gaps = 2/153 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
           ++P++ ++   S+      F+ G DD + KP +  E+  R+ A+ +R+   N+++ + G 
Sbjct: 72  KIPVLIMTAKESIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRVGKFNDKSLKFGN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V +  ++ +V G+   L  +E  +L Y++ N+   + K+QIF  I+G FD     +VV
Sbjct: 132 LTVDTTRKEVQVNGQAIELLGKELDLLIYILQNQNVILPKSQIFDRIWG-FDSDTTISVV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           E ++SK+RKKL+     + + + R +GY +  N
Sbjct: 191 EVYVSKIRKKLKGTDFVNHLQTLRSVGYILKAN 223


>gi|294012297|ref|YP_003545757.1| OmpR-family two-component system response regulator PhoP
           [Sphingobium japonicum UT26S]
 gi|292675627|dbj|BAI97145.1| OmpR-family two-component system response regulator PhoP
           [Sphingobium japonicum UT26S]
          Length = 221

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 8/150 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132
           P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR    +++    G +R
Sbjct: 74  PVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRASGNASSELTAGDVR 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191
           + +      ++GE   L  +E ++L YL+ ++GK V++T++   IY   FD   + N +E
Sbjct: 134 LDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQDFDR--DSNTIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++++RK    KLG D + + R LGYS+D
Sbjct: 192 VFVTRIRK----KLGADVITTIRGLGYSLD 217


>gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 229

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 24/214 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+ A    DG           EE+ ++ A  D+  ++  L G      ++ R +R 
Sbjct: 21  LRKEGFTAAIATDG-------QQALEEFDRNGA--DIVLLDLMLPGMSGT--DVCRELRQ 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128
            S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR   S+  ++  
Sbjct: 70  RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGDSSGDSQQE 129

Query: 129 ------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 GP+R+  +     V G   PLP +E  +LEYL+ N G+ + + Q+   ++G  D
Sbjct: 130 QTVLIGGPVRMDVERHVVTVNGTEVPLPLKEFDLLEYLLRNVGRVLTRNQLIDRVWG-AD 188

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
              +   ++ H+ +LR K+  + G     S R+L
Sbjct: 189 YVGDTKTLDVHVKRLRSKIEPEPG-----SPRYL 217


>gi|194397670|ref|YP_002037262.1| VncR response regulator TCS10 [Streptococcus pneumoniae G54]
 gi|194357337|gb|ACF55785.1| VncR response regulator TCS10 [Streptococcus pneumoniae G54]
          Length = 218

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 109/225 (48%), Gaps = 18/225 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R    
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118

Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +TG I  + D +         + G+  P+  +E  IL+YL+ N G+ + ++QI  A
Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDA 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   DE   + V++ +I KLRK    KL  D + + R +GY ++
Sbjct: 176 VWKATDEVPFDRVIDVYIQKLRK----KLDLDCILTVRNVGYKLE 216


>gi|300024709|ref|YP_003757320.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526530|gb|ADJ24999.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 225

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 5/156 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126
           A  +VP++ ++    +   ++  D+G DD + KP    E+LARV A+ RR        R 
Sbjct: 69  AGRRVPVLFLTALGGVDDRVEGLDAGGDDYLVKPFAFSELLARVNALARRPHTIGEETRL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           + G + +    R     G+   L  RE R+LE LM NRG+ V +T +   ++   FD   
Sbjct: 129 KVGDLEIDLVSRKVTRGGDTIDLQPREFRLLEVLMRNRGRVVTRTMLLERVWSFHFDP-- 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +VVE+HIS+LR K+      + + + R  GY+++
Sbjct: 187 KTSVVETHISRLRAKIDKPYDTELIHTIRGCGYTVN 222


>gi|237798950|ref|ZP_04587411.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021804|gb|EGI01861.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 225

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL   + F P+++ R +GY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDGSVAFKPIETVRGMGY 218


>gi|160940480|ref|ZP_02087825.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437060|gb|EDP14827.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
          Length = 226

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 76/144 (52%), Gaps = 2/144 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +SQVP+I ++     +  L  F  GVD+ ++KP   + ++ARV AI RR  V
Sbjct: 65  EVLRTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVEAILRRTNV 124

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +    G I +        + G+   L  +E  +L Y + N+G  +++ +I + ++  
Sbjct: 125 ASTDSVNVGGICIDKAAHQVTIDGQEIDLSFKEFELLTYFVENQGIALSREKILNNVWN- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D   +   +++H+ KLR K+  K
Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEK 207


>gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 254

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 88/166 (53%), Gaps = 7/166 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S VP+I ++    ++  ++  D G DD + KP   +E+LARV A  R  K
Sbjct: 88  LEVCRRVREISDVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARVRAAIRVHK 147

Query: 121 V--SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + NR E       + ++    +  V+G++  L ++E  +LEY++ N+   + + QI 
Sbjct: 148 ANEAGNRDERVLAVKDLVLYPGRYEVRVKGDLVELTKKEYSLLEYMLRNKPNVLTRDQIL 207

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   + NVV+ +I  LR K+  +     + + R +GY+I
Sbjct: 208 QEVWG-YDYVGDTNVVDVYIRYLRAKIDERFDDKYIYTVRGVGYAI 252


>gi|332308857|ref|YP_004436707.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176186|gb|AEE25439.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 224

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 75/134 (55%), Gaps = 5/134 (3%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           +G DD + KP    E+  R+  +  R  L + N++ E GP  +    +  +  G    L 
Sbjct: 93  NGADDYLTKPFSFEELHVRLLCLMNRGSLNIKNSKIEHGPFSLDIHFKQLKCGGFDVKLT 152

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-P 209
             E +I+E L +N+GK ++  ++   + G +D AV +N +E+H+S  RKK+++ LGF+ P
Sbjct: 153 PNEYKIIECLFSNQGKVLSSEKLSEYLAGQYD-AVAKNSIEAHLSTARKKVKS-LGFELP 210

Query: 210 VDSKRFLGYSIDWN 223
           + +KR  GY ++ N
Sbjct: 211 IQTKRGFGYFVEQN 224


>gi|322411860|gb|EFY02768.1| Transcriptional regulatory protein ciaR [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 224

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130
           ++P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K ++     G 
Sbjct: 72  KIPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTGKFTDKNLAFGN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V    ++ +V G+   L  +E  +L YL+ N+   + KTQIF  ++G FD     +VV
Sbjct: 132 VVVDLGKKEVQVDGQPIELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG-FDSDTTISVV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E ++SK+RKKL+     D + + R +GY
Sbjct: 191 EVYVSKIRKKLKGTDLVDKLQTLRSVGY 218


>gi|126702209|gb|ABO26808.1| PmrA [Legionella feeleii]
          Length = 222

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 14/158 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           ++ P+I ++   S++  +   D+G DD + KP    E+ ARV A+ RR   S  RA+   
Sbjct: 71  NRTPVIILTARESVEDRVKGLDAGADDYMTKPFDLNELSARVRALVRR---SQGRAD-AV 126

Query: 131 IRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           ++  +   DP      V   +  +PRRE  +L+ L+ N G+ +++ Q+  +IYG +DE V
Sbjct: 127 LQYRNITLDPAAHSVYVDDVIVNVPRREFSLLQKLLENSGQVLSREQLMQSIYG-WDEDV 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + N +E HI  LRKKL        + + R +GY ++ N
Sbjct: 186 DSNALEVHIHNLRKKLNANF----IRTIRGVGYMVEKN 219


>gi|225374986|ref|ZP_03752207.1| hypothetical protein ROSEINA2194_00609 [Roseburia inulinivorans DSM
           16841]
 gi|225213176|gb|EEG95530.1| hypothetical protein ROSEINA2194_00609 [Roseburia inulinivorans DSM
           16841]
          Length = 237

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123
           IR  S+VP++ +S        +   + G DD + KP   + + A++ A+ RR    K+++
Sbjct: 80  IRKTSKVPIVFLSSADDNMNIVMAMNMGGDDFIAKPFDLQVLTAKLQAVLRRSYGSKLTS 139

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E G + +  +     V GE   L + E  IL+ LM  +GK V++ +I   ++G  DE
Sbjct: 140 HSIECGEVVLNLNDTSVAVCGEKIDLTKNEFLILKTLMEKQGKVVSREEIMERLWG-NDE 198

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V++N +  +I+++RKKL      D + +KR LGY +
Sbjct: 199 FVDDNTLTVNITRIRKKLEAAGVDDFITTKRGLGYLV 235


>gi|182627315|ref|ZP_02954997.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177907260|gb|EDT70003.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 229

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR     P+I IS   +++  ++    G DD ++KP    E+LARV A+ RR K++N+  
Sbjct: 70  IRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKITNSSE 129

Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               I+  +       R+ +V GE   L  +E +ILE L+ N  K   K  +F  ++   
Sbjct: 130 GVETIKYKNLILEPRSREVKVNGEEIQLTSKEFKILELLVCNPKKVFTKANLFETVWK-- 187

Query: 182 DEAV-EENVVESHISKLRKKLR 202
           +E + ++N +  HIS LR K+ 
Sbjct: 188 EEFLGDDNTINVHISNLRNKIN 209


>gi|332184581|gb|AEE26835.1| DNA-binding response regulator [Francisella cf. novicida 3523]
          Length = 228

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R    +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+
Sbjct: 60  LEVLRNVRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRI 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + ++    IR      +P  +     G + P+ ++E  +L  L+ N G+ V KTQ+ 
Sbjct: 120 DTRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             +Y   D+ ++ N +E H+  LRKK+
Sbjct: 180 EEVYS-TDKEMDTNTLEVHMHNLRKKI 205


>gi|320323415|gb|EFW79503.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327611|gb|EFW83623.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 225

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL + + F P+++ R +GY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGY 218


>gi|229000557|ref|ZP_04160100.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
 gi|229003857|ref|ZP_04161665.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228757365|gb|EEM06602.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228759200|gb|EEM08203.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
          Length = 228

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 70  FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 129

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + + N      I V  D     +     PL  +E  IL+ L+ N+ K + +  I   ++
Sbjct: 130 DQSTENHLFFKEIHVDCDAYKVYINELEIPLTAKEFEILQLLLQNKKKVITRESIVEKVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   E  ++++HI  +RK    KL    + + + +GY ID
Sbjct: 190 G-YEYHGETRMIDTHIKNIRK----KLDISYIKTVKGIGYKID 227


>gi|237678811|emb|CAQ57538.1| two-component response regulator [Bradyrhizobium elkanii]
 gi|298113008|gb|ADI58611.1| TtsI [Bradyrhizobium elkanii]
          Length = 229

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++ R    +P I +S    L   +  F++G DD + KP+   E++AR+ AI RR    
Sbjct: 63  LKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRR---- 118

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   T P+  F +       R   V G +  + RRE  ILE+L+   G+ V +  +  +
Sbjct: 119 -STQMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDS 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +Y  FD+ V  N +E  I +LR  L        + + R +GY+++
Sbjct: 178 LYA-FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTLE 221


>gi|227823287|ref|YP_002827259.1| two component response regulator [Sinorhizobium fredii NGR234]
 gi|227342288|gb|ACP26506.1| two component response regulator [Sinorhizobium fredii NGR234]
          Length = 233

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSIIATGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206
             DE  E  +++  I KLRKKL N  G
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206


>gi|146283048|ref|YP_001173201.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145571253|gb|ABP80359.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
          Length = 225

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 10/223 (4%)

Query: 1   MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M VL+ +D AL+  G +A     G+ ++   +    E L  +A  DV  ++  L    E 
Sbjct: 1   MHVLLAEDDALIASGIVAGLNAQGLIVDHAATAAAAEALLRAAHFDVLILDLGL--PDED 58

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L L R +R    ++P++ ++   ++   +    +G DD + KP   RE+ AR+  + RR
Sbjct: 59  GLALLRRLRQQGLELPVLVLTARDAVSDRVTGLQAGADDYLLKPFDLRELAARLHTLMRR 118

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   S N  E G +       +  + G +  L RRE+ +L+ L+ N+G+ ++  Q+  A+
Sbjct: 119 MSGRSVNLIEHGRLSYDPSRCEARLDGRLVDLSRREQALLQALLNNQGRVLSSEQLKDAV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG  D+ VE N +  HI  LR+    KLG   V++ R LGY +
Sbjct: 179 YGFADD-VESNALNVHIHHLRR----KLGSGIVETVRGLGYRL 216


>gi|301167935|emb|CBW27520.1| two-component system response regulator [Bacteriovorax marinus SJ]
          Length = 225

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 3/125 (2%)

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSD 136
           +S    ++T ++  + G DD + KP+  RE+LARV     RL K + +  + G  R+  D
Sbjct: 82  LSSITKVETKVEGLELGADDYIIKPVLSRELLARVKNRINRLEKEAPSVYQYGSTRLSVD 141

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            +  E+ GEV  +   E +IL  L  N GK V+K  +  +++G+ D  ++ + ++SH+S 
Sbjct: 142 SQRLEIHGEVVDITPTEYKILHCLWKNVGKMVSKNDLSQSVWGVSD--IDAHTIDSHVSN 199

Query: 197 LRKKL 201
           LRKKL
Sbjct: 200 LRKKL 204


>gi|207091870|ref|ZP_03239657.1| putative transcriptional regulator [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 212

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 28/211 (13%)

Query: 21  DDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPL 75
           + G++++GF      SLE  E+L      D+   +  ++     +  + RI   HS + +
Sbjct: 6   EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVSDKNALSFVSRIKEKHSSIVV 60

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVF 134
           +  SD P+ +  +  F+ G DD + KP  +R I A VA I  RL+   +N  E G + + 
Sbjct: 61  LVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARIEARLRFWGSNVIEIGDLTIS 118

Query: 135 SD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            D       GR+ EV+G+ F        +L +L  +R + V+K Q+  AI+    E V  
Sbjct: 119 PDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQIVSKEQLLDAIWEE-PEMVTP 170

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 171 NVIEVAINQIRQKMDKPLGISTVETVRRRGY 201


>gi|332185405|ref|ZP_08387153.1| response regulator [Sphingomonas sp. S17]
 gi|332014383|gb|EGI56440.1| response regulator [Sphingomonas sp. S17]
          Length = 226

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 10/162 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R  +     P++ ++   S    +   D+G DD V KP    E++AR+ A+ RR    
Sbjct: 63  LDRWRKEGKTTPVLVLTARDSWSDKVAGLDAGADDYVAKPFQTEELIARLRALIRRAS-G 121

Query: 123 NNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           N  +E     V  D R  +V   GE   L  +E ++L YL+ ++GK V++T++   IY  
Sbjct: 122 NASSELTAGDVRLDTRSGKVTRAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQ 181

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   + N +E  ++++RK    KLG D + + R LGYS+D
Sbjct: 182 DFDR--DSNTIEVFVTRIRK----KLGQDVITTIRGLGYSLD 217


>gi|154503112|ref|ZP_02040172.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
 gi|153796106|gb|EDN78526.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
          Length = 231

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR HS+VP+I ++     +  L  FD GVD+ ++KP   + ++ARV AI RR + 
Sbjct: 71  QVCREIRMHSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRTQG 130

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S N  E     +  D     V  +  P  L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 131 SGNTDEISAGGIVVDKAAHTVMSDGSPVDLSFKEFELLTYFIENQGIALSREKILNNVWN 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL +K
Sbjct: 191 -YDYFGDARTIDTHVKKLRSKLGDK 214


>gi|58579495|ref|YP_197707.1| hypothetical protein ERWE_CDS_08310 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617548|ref|YP_196747.1| hypothetical protein ERGA_CDS_08210 [Ehrlichia ruminantium str.
           Gardel]
 gi|58417160|emb|CAI28273.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
 gi|58418121|emb|CAI27325.1| Unknown [Ehrlichia ruminantium str. Welgevonden]
          Length = 283

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
           +VP++ +S   S+   +     G DD V KP H  E+LAR+ AI RR +    +    G 
Sbjct: 91  KVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVRRTRGHPESIVRVGN 150

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +  D +  E  GE+  L ++E  ++E L +  G  + K    S +Y   DE  ++ ++
Sbjct: 151 IAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 210

Query: 191 ESHISKLRKKLR 202
           +  + KLRKKL+
Sbjct: 211 DVFMCKLRKKLK 222


>gi|229020274|ref|ZP_04177043.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
 gi|229026498|ref|ZP_04182853.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228734806|gb|EEL85446.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228741027|gb|EEL91256.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
          Length = 216

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ GVDD + KP H+   + RV A+ RR    
Sbjct: 58  ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGVDDYITKPFHYTVFIKRVEAVLRRTTTK 117

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++
Sbjct: 118 ETETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +  V+++HI  LRK    KLG   + + + +GY I+
Sbjct: 178 G-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 215


>gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 235

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 10/136 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRVFSDGRDPEVQGEVF 147
           G DD + KP   RE++ARV AI RR + SN   E       G +++F D  +    GE  
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTQFSNGETEAIDKIVIGDLKIFPDQYEAYFGGERL 155

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L  +E  +L YL  ++G+ + + Q+ SA++  +D A +  +V+ HIS LR+K+      
Sbjct: 156 ELTPKEFELLLYLAKHKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLREKIEQDTK- 213

Query: 208 DP--VDSKRFLGYSID 221
            P  + + R LGY ++
Sbjct: 214 KPLYIKTIRGLGYKLE 229


>gi|320157931|ref|YP_004190309.1| DNA-binding response regulator [Vibrio vulnificus MO6-24/O]
 gi|319933243|gb|ADV88106.1| DNA-binding response regulator [Vibrio vulnificus MO6-24/O]
          Length = 218

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +LI+D  L+    +      G +++    LE    + S+ + ED +A+   L       
Sbjct: 3   LLLIEDDTLLGQSMVTSLSRHGYTVDW---LEKGSGVTSALKTEDFTAVILDLTLPDIDG 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R IR+    +P++ ++    ++  +   D G DD + KP    E+LAR+  + RR 
Sbjct: 60  LDVLRNIRSAGFNLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQ 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             S     E G + +    +    Q  V  L R E +IL  LM N G+ ++K Q+  +++
Sbjct: 120 SGSATEVIEVGELSLSLSEQSIRYQEAVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLH 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D++  +N +E HI  LRKK  N     P+ + R +GY I+
Sbjct: 180 G-WDDSASDNAIEVHIHNLRKKAPNV----PIKNIRGVGYIIE 217


>gi|300933784|ref|ZP_07149040.1| two-component system response regulator TcsR8 [Corynebacterium
           resistens DSM 45100]
          Length = 230

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 9/172 (5%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L + A +D+  +   L+  G    E+ R +R  S VP+I ++   S    +   + G DD
Sbjct: 38  LDTFAAQDIDIVLLDLMLPGMSGTEVCRQLRQTSSVPVIMVTARDSEIDKVVGLELGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---DPE-----VQGEVFPL 149
            V KP   RE++AR+ A+ RR   + +  E    ++  + R   D E     V GE  P+
Sbjct: 98  YVTKPYSARELIARIRAVLRRGGETEHVEEADEGQILREDRVMMDVERHIVTVDGEPVPM 157

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           P +E  +LEYLM N G+ + + Q+   ++G+ D   +   ++ HI +LR K+
Sbjct: 158 PLKEFDLLEYLMRNSGRVLTRGQLIDRVWGV-DYVGDTKTLDVHIKRLRSKI 208


>gi|194366239|ref|YP_002028849.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194349043|gb|ACF52166.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 224

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 16/154 (10%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP+I +S    L   +   D G DD + KP    E+ AR+       + +  R     + 
Sbjct: 73  VPIIVLSALGQLPDRIAGLDEGADDYLAKPFALEELFARI-------RAAGRRPSGMQVE 125

Query: 133 VFSDGR---DP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           + S GR   DP      V G+   LPRRE R+L  L    G+ V +  I  A+YG FD+ 
Sbjct: 126 LVSIGRLVFDPASGEASVGGQRLELPRREIRVLTALARRLGRTVLRESIEMAVYG-FDDG 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  N ++SH+S+LR+KL +      + + R +GY
Sbjct: 185 IHSNTLDSHVSRLRRKLADADARVEIHAIRGVGY 218


>gi|69244158|ref|ZP_00602694.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257880948|ref|ZP_05660601.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257884605|ref|ZP_05664258.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257892530|ref|ZP_05672183.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|258616213|ref|ZP_05713983.1| putative response regulator CiaR [Enterococcus faecium DO]
 gi|293560618|ref|ZP_06677106.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1162]
 gi|293569893|ref|ZP_06680980.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1071]
 gi|294614504|ref|ZP_06694417.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1636]
 gi|294617772|ref|ZP_06697386.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1679]
 gi|294621682|ref|ZP_06700846.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           U0317]
 gi|314939067|ref|ZP_07846330.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943555|ref|ZP_07850318.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948812|ref|ZP_07852183.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314952199|ref|ZP_07855216.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314993264|ref|ZP_07858639.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314994826|ref|ZP_07859957.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68196615|gb|EAN11041.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257816606|gb|EEV43934.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257820443|gb|EEV47591.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257828909|gb|EEV55516.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|291587641|gb|EFF19518.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1071]
 gi|291592622|gb|EFF24218.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1636]
 gi|291595946|gb|EFF27225.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1679]
 gi|291598691|gb|EFF29744.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           U0317]
 gi|291605441|gb|EFF34887.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1162]
 gi|313590937|gb|EFR69782.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592245|gb|EFR71090.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313595664|gb|EFR74509.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597753|gb|EFR76598.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313641619|gb|EFS06199.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644755|gb|EFS09335.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 224

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 5/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I +   Q P++ ++   SL+  ++ F+ G DD + KP +  E++ RV A+ +R    
Sbjct: 63  LAKIRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGL 122

Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        +  D +  EV  + +V P+  +E  +L Y + N+G  + K QIF  I+G 
Sbjct: 123 FDENVLKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           FD      V+E ++S LRK LR+  G D  + + R +GY
Sbjct: 182 FDSDTTITVIEVYMSNLRKHLRST-GLDKEIKTLRNVGY 219


>gi|255523314|ref|ZP_05390284.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188247|ref|ZP_06856639.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512968|gb|EET89238.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047373|gb|EFG86815.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 232

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 21/221 (9%)

Query: 10  LVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           LVK+G+ + LF D    LE FN+ E +  +      ++                L  +IR
Sbjct: 23  LVKEGFEVELFNDGLSVLEAFNTKEPDMLILDIMMPEMDG------------FSLCSLIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VS 122
             S +P+I +S   +    +     G DD + KP    E++AR+ +I+RR++      + 
Sbjct: 71  QKSCIPIIIVSAKDTEPDKIAGLTLGCDDYLTKPFSPMELIARIKSIFRRIELDKKQHIE 130

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N+  T G I V  D ++    G    L   E   + YL+ N+ + V+++++   ++G F
Sbjct: 131 DNKVITIGDISVNLDIKEIHYHGNNIGLTGMEFSFIYYLITNKNRAVSRSELLDKVWG-F 189

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +  VE    +  + ++RKKL N      +D+    G+ I +
Sbjct: 190 ENDVETRATDDMVKRIRKKLLNAGSSLKIDTVWGFGFKIQF 230


>gi|168202297|ref|ZP_02629867.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298694|gb|EDS80773.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 229

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR     P+I IS   +++  ++    G DD ++KP    E+LARV A+ RR K++N+  
Sbjct: 70  IRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKITNSSE 129

Query: 127 ETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               I+     +    R+ +V+GE   L  +E +ILE L+ N  K   K  +F  ++   
Sbjct: 130 GVEKIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETVWE-- 187

Query: 182 DEAV-EENVVESHISKLRKKL 201
           +E + ++N +  HIS LR K+
Sbjct: 188 EEFLGDDNTINVHISNLRNKI 208


>gi|291519845|emb|CBK75066.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 224

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123
           IR  SQVP++ +S        +   + G DD ++KP   + + A++ AI RR     +S 
Sbjct: 67  IRKISQVPVVFLSSADDNMNIVMAMNMGADDFISKPFDLQVLTAKLQAILRRSYGESISV 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           ++ + G I +  D     + G+   L + E  IL+ LM   GK V++  I   ++G  DE
Sbjct: 127 HKLQVGNISLNLDDTTATIDGDKLDLTKNEYLILKALMERPGKVVSRESIMERLWGA-DE 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V++N +  +++++RKK+      D + +KR LGY +
Sbjct: 186 FVDDNTLTVNVTRIRKKIEAAGVPDFITTKRGLGYIV 222


>gi|229170768|ref|ZP_04298394.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228612717|gb|EEK69916.1| Two-component response regulator vanRB [Bacillus cereus AH621]
          Length = 214

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 21/170 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 56  FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 113

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKT 171
            SNN++ T    VF   R+  V G+ +         PL  +E  IL+ L+ N  K + + 
Sbjct: 114 -SNNQS-TDNHFVF---RELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRE 168

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I   I+G ++ A +  ++++H+  +RK    KL    + + + +GY ID
Sbjct: 169 NIVEKIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 213


>gi|333029328|ref|ZP_08457389.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332739925|gb|EGJ70407.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 222

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 23/217 (10%)

Query: 8   RALVKDGY---IALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + L ++GY   IA  G+DG+S  LE    L   +W+    +                 ++
Sbjct: 18  QGLEEEGYNVTIAHNGEDGLSMVLEKCPDLVLLDWMLPQMQG----------------ID 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R+IR   Q  P++ ++   ++  T++   +G +D + KP    E+LAR+   +R  +V
Sbjct: 62  VCRLIRQADQSTPILFLTAKDTINETIEGLQAGANDYIKKPFSFAELLARIEVHFREKEV 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N+ + G I +          GE  PL +RE  +LE+L+AN+G+  ++  I   I+ + 
Sbjct: 122 LKNQLKLGNILLNKSTYQVIKSGEEIPLTQREFELLEFLIANKGEVCSRQLIIEKIWNI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D   +  V++  I+ +RKKL        + + R +GY
Sbjct: 181 DFDYDTGVIDVFINAIRKKLSMDKDEGYIKTIRGVGY 217


>gi|288960015|ref|YP_003450355.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288912323|dbj|BAI73811.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 219

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 10/157 (6%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           RA   VP++ ++   +    +   D+G DD + KP    E+LARV A+ RR K  +  AE
Sbjct: 68  RAGISVPVLILTARGAWTEKVQGIDAGADDYLAKPFSMEELLARVRALIRRAK-GHASAE 126

Query: 128 TGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
                V  D R   V   GE   L   E R+L YLM  +G+ V++T++   +Y   FD  
Sbjct: 127 ITCGGVVLDTRTGRVTVDGEPIELTAFEYRVLSYLMHRKGQVVSRTELTEHVYAQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + N +E  + +LR+    KLG D + + R LGY  D
Sbjct: 186 -DSNTIEVFVGRLRR----KLGVDVIKTVRGLGYRAD 217


>gi|149187001|ref|ZP_01865309.1| two-component response regulator [Erythrobacter sp. SD-21]
 gi|148829390|gb|EDL47833.1| two-component response regulator [Erythrobacter sp. SD-21]
          Length = 226

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 8/150 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132
           P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR   + +   T G +R
Sbjct: 74  PVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNTSSELTAGEVR 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191
           + +      ++GE   L  +E ++L YLM ++GK V++T++   IY   FD   + N +E
Sbjct: 134 LDTRSGRVTLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYDQDFDR--DSNTIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++++RK    KLG + + + R LGYS+D
Sbjct: 192 VFVTRIRK----KLGAEVITTIRGLGYSLD 217


>gi|293603882|ref|ZP_06686297.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817719|gb|EFF76785.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 234

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 8/151 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129
           S+ P++ ++    ++  +   D+G DD + KP   RE+ AR  A+ RR +  +      G
Sbjct: 71  SKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLRRPIAQATGVQRFG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + + S  R   + G+   LP+RE  +LE L+A   + V+KT+I + ++  FD+    N 
Sbjct: 131 DLVIDSAARHVSLAGQRIDLPKREYSLLEILLAGMNRAVSKTEIANKLFA-FDDEAAPNA 189

Query: 190 VESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
           +E +I++LR+KL       P  ++++R  GY
Sbjct: 190 IEVYIARLRRKLEGS----PLRIETQRGTGY 216


>gi|261839252|gb|ACX99017.1| putative transcriptional regulator [Helicobacter pylori 52]
          Length = 223

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55
           M VL+ ++  V  G I    + G++++GF      SLE  E+L      D+   +  ++ 
Sbjct: 1   MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +  + RI   HS + ++  SD P+ +  +  F+ G DD + KP  +R I A VA I
Sbjct: 52  DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109

Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             RL+   +N  E G + +  D       GR+ EV+G+ F        +L +L  +R + 
Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLIHLARHRDQI 162

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+K Q+  AI+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212


>gi|116253499|ref|YP_769337.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|209550655|ref|YP_002282572.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|241206026|ref|YP_002977122.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|115258147|emb|CAK09248.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|209536411|gb|ACI56346.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|240859916|gb|ACS57583.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 233

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206
             DE  E  +++  I KLRKKL N  G
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206


>gi|83644677|ref|YP_433112.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632720|gb|ABC28687.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 223

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D  +++   +   GD G  ++     E   WL S    D+  ++  L    G ++
Sbjct: 3   LLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGFEL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           L+  R + A S V ++   D   ++  +    SG DD + KP    E+LAR+ A+  RR 
Sbjct: 63  LDRLRTLGADSLVLMLTARD--EVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N  E G + +    +   V G    LP RE  +LE L  NR + V++ +I   IY 
Sbjct: 121 GCASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIY- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D+ +E   NVV+S IS LRK + +K     + ++R  GY I
Sbjct: 180 --DDKIEPMSNVVDSAISSLRKMIDHKDRPSFILTRRGHGYQI 220


>gi|291561456|emb|CBL40255.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 226

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 5/162 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR +SQVP+I ++     +  L  F+ GVD+ + KP   + ++AR+ AI RR   
Sbjct: 65  ETCKTIRRYSQVPIIMLTARSEERDELLGFELGVDEYITKPFSPKILVARIEAILRRGSG 124

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++     E   IRV  D  +  V G    L  +E  +L Y M N+G  +++ +I + ++ 
Sbjct: 125 TSTGEILEADGIRVDKDAHEVTVDGRPVDLSNKEFELLTYFMENKGIALSREKILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   +++H+ KLR KL  K   D + +   +GY ++
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGPK--GDNIKTVWGMGYKLE 223


>gi|291166732|gb|EFE28778.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 228

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 10/208 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++D  +     +G  +  F N+ +  E+LQ++   +V  +   ++ +G   
Sbjct: 4   ILIVDDEKRIRDLIVMYLKKEGYEVTDFDNADKAYEFLQNN---EVDLLVLDIMMRGMNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L+L + +R  S+VP+I +S        +   + G DD + KP   RE++ R+  I RR  
Sbjct: 61  LDLCKKVRMTSEVPIIFVSARSEELDRILGLELGADDYLAKPFSVRELVVRIKNILRRTN 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K  +N      +++F + R  +V  E   L  +E  +L+YL+ N+G  +++ +I  
Sbjct: 121 AVVQKKEDNVLSVEDLKIFIEQRIVKVGEEEVALTTKEYEVLKYLVENKGYPLSRDKIIQ 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            I+G   +  + N V+  I +LRKKL++
Sbjct: 181 NIWGYEYDGYDRN-VDDTIKRLRKKLKD 207


>gi|222086833|ref|YP_002545367.1| two-component response regulator protein controls chromosomal
           replication initiation [Agrobacterium radiobacter K84]
 gi|221724281|gb|ACM27437.1| two-component response regulator protein controls chromosomal
           replication initiation [Agrobacterium radiobacter K84]
          Length = 233

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206
             DE  E  +++  I KLRKKL N  G
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206


>gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
 gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
          Length = 234

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD + KP   RE+LAR+ A+ RR ++ 
Sbjct: 63  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQMV 122

Query: 123 NNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               E          G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 123 AESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              I+G  D   +   ++ H+ ++R K+    G    + + R LGY ID
Sbjct: 183 IDRIWG-SDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKID 230


>gi|85373556|ref|YP_457618.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
 gi|84786639|gb|ABC62821.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
          Length = 225

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 8/150 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132
           P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR   + +   T G +R
Sbjct: 74  PVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNTSSELTAGDVR 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191
           + +      ++GE   L  +E ++L YLM ++GK V++T++   IY   FD   + N +E
Sbjct: 134 LDTRSGRVSLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYDQDFDR--DSNTIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++++RK    KLG + + + R LGYS+D
Sbjct: 192 VFVTRIRK----KLGAEVITTIRGLGYSLD 217


>gi|83309728|ref|YP_419992.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82944569|dbj|BAE49433.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 238

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R+  A    P++ +S        +    SG DD + KP    E++AR+ AI RR K  
Sbjct: 63  LRRLRSARIDTPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  +TG + V  D R   V G+   L  +E  ILE L   +G+ + K Q  + +YG  
Sbjct: 123 AQSVIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYGGI 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206
           DE  E  +++  I KLRKKL    G
Sbjct: 183 DEP-ELKIIDVFICKLRKKLATATG 206


>gi|229104138|ref|ZP_04234811.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228679273|gb|EEL33477.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
          Length = 214

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 21/170 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 56  FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 113

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKT 171
            SNN++ T    VF   R+  V G+ +         PL  +E  IL+ L+ N  K + + 
Sbjct: 114 -SNNQS-TDNHFVF---RELHVDGDAYKVYVNRVDVPLTTKEFEILQLLLQNEKKVLTRE 168

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I   I+G ++ A +  ++++H+  +RK    KL    + + + +GY ID
Sbjct: 169 NIVEKIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 213


>gi|86358932|ref|YP_470824.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CFN 42]
 gi|190893160|ref|YP_001979702.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CIAT 652]
 gi|218682349|ref|ZP_03529950.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CIAT 894]
 gi|86283034|gb|ABC92097.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CFN 42]
 gi|190698439|gb|ACE92524.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CIAT 652]
          Length = 233

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206
             DE  E  +++  I KLRKKL N  G
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206


>gi|328956092|ref|YP_004373425.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328456416|gb|AEB07610.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 221

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  +E+ R +R  ++ + ++ +S   S+   ++  DSG +D + KP    E+ AR+ A+
Sbjct: 56  GKDGIEILRELRESARDIKVLILSARSSVADRVNGLDSGANDYLIKPFAFEELEARIRAL 115

Query: 116 -YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +R    + +    G +R+ + GR   V      L R+E  +LE+L+ +RG+ V++  + 
Sbjct: 116 THRSFTQAASVLRCGDLRLDTIGRTLRVGSREIALTRKELAVLEHLLLHRGEVVSQEDLL 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I+   D     NVV  H++ LRKKLR ++G D V ++   GY ID
Sbjct: 176 DHIWD-RDANTFSNVVRVHVASLRKKLRAEVGDDVVKTRIGEGYYID 221


>gi|153005959|ref|YP_001380284.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029532|gb|ABS27300.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 233

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD A V+    A  G  G  L    +L   E L +S   DV  ++   +  G+ V
Sbjct: 7   LVLVVDDEAQVRRFLRAALGSRGFRLVEAETLREAEQLATSHNPDVYLLD-LTLPDGDGV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L R +R  ++ P+I +S     +  ++  D+G DD + KP    E+LAR+    R  +
Sbjct: 66  -DLARRLREWTRAPIIVLSARGREEDKVNALDAGADDYLTKPFGVNELLARLRVALRHAQ 124

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S  +    E GP+R+    R+  V+G    L   E R+L  L  + G  +   QI   +
Sbjct: 125 ASPAQPAVLEAGPLRIDLARREVTVEGREVRLTPTEYRLLALLARHAGMVLTHRQILREV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G    A E + V  H+++LRKK+
Sbjct: 185 WG--PNATEAHYVRVHMAELRKKI 206


>gi|83717906|ref|YP_439918.1| DNA-binding response regulator TctD [Burkholderia thailandensis
           E264]
 gi|83651731|gb|ABC35795.1| DNA-binding response regulator TctD [Burkholderia thailandensis
           E264]
          Length = 267

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 104 LEVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 163

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   + R E GP+   S  R   +  +   L  RER +LE L+   G+ + K  +   I+
Sbjct: 164 LGHDHVRVECGPLEFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 223

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL    G   V + R LGY ++
Sbjct: 224 GL-DESVNADAIEIYVHRLRKKLEGS-GVAIV-TLRGLGYLLE 263


>gi|85706269|ref|ZP_01037363.1| two component response regulator [Roseovarius sp. 217]
 gi|85669042|gb|EAQ23909.1| two component response regulator [Roseovarius sp. 217]
          Length = 219

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 7/158 (4%)

Query: 65  RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           + +RA  +V P+I ++    +   ++  ++G DD + KP    E+ AR+ ++ RR   + 
Sbjct: 64  KALRARGEVTPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYSGNP 123

Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N   T GP+ +    R     G+   L  RE  + E  +A  G+ ++K Q+   +Y  +D
Sbjct: 124 NPIVTHGPLDIDLAARSVHRGGKPVQLTAREWALFEAFLARPGQLLSKAQLEDKLYA-YD 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             VE N +E H+S+LRK    KLG   V+++R LGY +
Sbjct: 183 AEVESNTIEVHVSRLRK----KLGAGIVETERGLGYRL 216


>gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 227

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 18/207 (8%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGISD 80
           LE E +  S A + + A+E F +   + +L           E+ R IRA S VP+I ++ 
Sbjct: 21  LEREGYDVSIAEDGLKAVEMFELHGADIILLDLMLPGLPGTEVCRAIRAKSMVPIIMLTA 80

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-----SNNRAETGPIRVFS 135
             +    +   + G DD V KP   RE+LAR+ A+ RR +      S+N  E G +RV  
Sbjct: 81  KDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRGQAQGSEGSSNVLEAGGVRVDV 140

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
           D     V+GE   LP +E  +LE L+ N G+ + + Q+   ++G  D   +   ++ H+ 
Sbjct: 141 DRYVVTVRGEDMQLPLKEFELLEMLVRNAGRVMTREQLIDRVWG-SDYVGDTKTLDVHVK 199

Query: 196 KLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +LR K+  N    + + + R LGY  +
Sbjct: 200 RLRTKIEENPSKPELLVTLRGLGYKFN 226


>gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 235

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD + KP   RE+LAR+ A+ RR ++ 
Sbjct: 64  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQMV 123

Query: 123 NNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               E          G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 124 AESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              I+G  D   +   ++ H+ ++R K+    G    + + R LGY ID
Sbjct: 184 IDRIWG-SDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKID 231


>gi|240142372|ref|YP_002966882.1| two component transcriptional regulator, winged helix family
           [Methylobacterium extorquens AM1]
 gi|240012316|gb|ACS43541.1| two component transcriptional regulator, winged helix family
           [Methylobacterium extorquens AM1]
          Length = 231

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 2/139 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A    P++ +S    ++  +    +G DD V KP H  E++AR+ AI RR K       T
Sbjct: 69  AKVGTPVLILSGMGGIEDKVKGLGNGADDYVVKPFHKDELIARINAIVRRSKGHAQSVVT 128

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + V  D +  EV G    L  +E ++LE L+  +G  + K    + +YG  DE  E 
Sbjct: 129 VGDLTVNLDAKTVEVSGHKVYLTGKEYQMLELLVLRQGTTLTKEMFLNHLYGGMDEP-EL 187

Query: 188 NVVESHISKLRKKLRNKLG 206
            +++  I KLRKKL N  G
Sbjct: 188 KIIDVFICKLRKKLANASG 206


>gi|258510063|ref|YP_003183497.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476789|gb|ACV57108.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 224

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 2/163 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R    VP++ ++        +     G DD + KP    E++ARV A+ RR ++
Sbjct: 62  ELTRWLREERDVPILLLTALGETSHKVRGLRLGADDYLVKPFAPEELVARVEALLRRYRI 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + A +   +R+ SD  + E  GE   LP +E ++L  L A+ G+ +++ ++   ++G 
Sbjct: 122 RADGALDLAVLRLLSDTYEVEANGERMALPPKEFQLLFTLAASAGRTLSRDKLIEEVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D A +E  V+ HI +LR K    +    + + R LGY ++ N
Sbjct: 181 YDYAGDERTVDVHIKRLRVKFPEDVYPFRIRTVRGLGYRLEVN 223


>gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484]
 gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family
           [Thermocrinis albus DSM 14484]
          Length = 226

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 21/217 (9%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQ---SSAREDVS-----AIEAFLIGKGEKVLELP 64
           D Y+     +G+  EGF      EW+Q   ++ R  V       I   ++ K +  +++ 
Sbjct: 10  DLYLGQMMVEGLRHEGFTV----EWVQDGFTALRRVVEENYDLVILDIMLPKFDG-MKVC 64

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR    +P+I ++    ++  ++   +G DD + KP   +E+ AR+ A+ RR +    
Sbjct: 65  RKIRETKDIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVLRRYRKKEG 124

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               G +R+     +   +G+   L RRE  +L+ L  N  + V++ +I++ ++G   E 
Sbjct: 125 VIMVGDLRIDPSAVEVTYRGQKIHLTRREFELLKLLAENANRVVSREEIYAKVWGYSHEE 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDP---VDSKRFLGY 218
              N+V+ +I    K LRNKLG  P   + + R  GY
Sbjct: 185 -GSNIVDVYI----KNLRNKLGDKPPRLIQTVRGYGY 216


>gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 231

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R IRA  +   +P+I ++        +    +G DD + KP    E+LAR+ A+ R
Sbjct: 60  IELCRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLR 119

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K ++  +R   G + +   G      GE   L   E R+LE+LM   G+  ++ Q+  
Sbjct: 120 RAKPAHVSDRLAAGDLELDRTGHRVRRGGEELHLGPTEFRLLEFLMLAPGRVFSREQLLD 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  ++E  V+ H+ +LRK L      DP+ + R  GY+ D
Sbjct: 180 GVWG-HDVYIDERTVDVHVGRLRKALNGPRQADPIRTVRGSGYAFD 224


>gi|206974313|ref|ZP_03235230.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217958161|ref|YP_002336705.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222094323|ref|YP_002528382.1| response regulator [Bacillus cereus Q1]
 gi|206747553|gb|EDZ58943.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217064677|gb|ACJ78927.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221238380|gb|ACM11090.1| probable response regulator [Bacillus cereus Q1]
          Length = 223

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + RI     + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR   S
Sbjct: 62  IQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR---S 118

Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N      IR     +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  +
Sbjct: 119 GNLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +G FD      +VE ++  LRKKL    G+   + + R +GY
Sbjct: 179 WG-FDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|313890176|ref|ZP_07823811.1| putative response regulator ArlR [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121537|gb|EFR44641.1| putative response regulator ArlR [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 224

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 2/134 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G +RV  D    +V G    L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRTGKFNENSITFGNLRVDLDRNAVKVNGSAVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L YL+ N+   + K+QIF  I+G FD     +VVE ++SK+RKKL++      
Sbjct: 151 LGKEYDLLIYLLQNQNVILPKSQIFDRIWG-FDSDTTISVVEVYVSKIRKKLKDTDFATN 209

Query: 210 VDSKRFLGYSIDWN 223
           + + R +GY +  N
Sbjct: 210 LQTLRSVGYILKAN 223


>gi|90022993|ref|YP_528820.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952593|gb|ABD82608.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 225

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 9/163 (5%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + +RA  +  P++ ++     Q  +D  ++G DD + KP H  E+ AR  A+ RR 
Sbjct: 60  IEVVKTLRARGRNFPILILTARGHWQDKVDGLEAGADDYLVKPFHTEELRARANALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S  +A      GPI + +  +   + G    L   E   LEYL  N GK ++KT +  
Sbjct: 119 --SAGKAAPEMVFGPININTANKSVSLNGAAVELTSFEYNTLEYLALNAGKPISKTVLTE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   D   + NV+E  I +LRKKL       P+ + R LGY
Sbjct: 177 HLYHQ-DFERDSNVIEVFIGRLRKKLDPDGDLKPIKTVRGLGY 218


>gi|323485737|ref|ZP_08091073.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323693077|ref|ZP_08107296.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
 gi|323400917|gb|EGA93279.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323502831|gb|EGB18674.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
          Length = 225

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 2/144 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR +SQVP+I ++     Q  L  F  GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  EVCRTIRKYSQVPIIMLTARGEEQDELQGFSLGVDEYISKPFSPKILVARVEAILRRSST 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +S    + G I +        V G+   L  +E  ++ Y   N+G  +++ +I + ++  
Sbjct: 125 MSQEVIDVGGIHIDKSAHQVLVDGKNVDLSYKEFELITYFAENQGIALSREKILNNVWN- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D   +   +++H+ KLR KL +K
Sbjct: 184 YDYFGDARTIDTHVKKLRSKLGDK 207


>gi|163759086|ref|ZP_02166172.1| probable transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162283490|gb|EDQ33775.1| probable transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 228

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    +++    GP+R+ +      V G    L
Sbjct: 91  IDAGADDYVTKPFHVEEVLARIRALIRRASGHASSEIVCGPVRLDTAASKASVDGTTLKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM +  + V++T++   +Y   FD   + N +E  + +LRK    K+G +
Sbjct: 151 TSHEFRLLSYLMHHMDQVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KIGVE 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY +
Sbjct: 205 LIETVRGLGYRM 216


>gi|229099979|ref|ZP_04230899.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|228683407|gb|EEL37365.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 214

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 21/170 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 56  FEVAKMIRSQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 113

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKT 171
            SNN++ T    VF   R+  V G+ +         PL  +E  IL+ L+ N  K + + 
Sbjct: 114 -SNNQS-TDNHFVF---RELHVNGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRE 168

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I   I+G ++ A +  ++++H+  +RK    KL    + + + +GY ID
Sbjct: 169 NIVEKIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 213


>gi|30023068|ref|NP_834699.1| two-component response regulator VanRB [Bacillus cereus ATCC 14579]
 gi|30265077|ref|NP_847454.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42784219|ref|NP_981466.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47530583|ref|YP_021932.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49480366|ref|YP_039053.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52140496|ref|YP_086334.1| response regulator [Bacillus cereus E33L]
 gi|65317022|ref|ZP_00389981.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118480119|ref|YP_897270.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|165870904|ref|ZP_02215556.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634910|ref|ZP_02393228.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167639953|ref|ZP_02398221.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685986|ref|ZP_02877209.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707061|ref|ZP_02897518.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652353|ref|ZP_02934856.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567210|ref|ZP_03020125.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033021|ref|ZP_03100434.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040431|ref|ZP_03107731.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196047515|ref|ZP_03114725.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206970050|ref|ZP_03231003.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206978207|ref|ZP_03239087.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|218234504|ref|YP_002369838.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218906232|ref|YP_002454066.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222098485|ref|YP_002532543.1| response regulator [Bacillus cereus Q1]
 gi|225867018|ref|YP_002752396.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227817807|ref|YP_002817816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601053|ref|YP_002869274.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687368|ref|ZP_05151225.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725381|ref|ZP_05187164.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254733723|ref|ZP_05191439.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740561|ref|ZP_05198252.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753177|ref|ZP_05205213.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761520|ref|ZP_05213541.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|270000517|ref|YP_003329022.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|296505470|ref|YP_003667170.1| two-component response regulator VanRB [Bacillus thuringiensis
           BMB171]
 gi|301056524|ref|YP_003794735.1| response regulator [Bacillus anthracis CI]
 gi|29898628|gb|AAP11900.1| Two-component response regulator vanRB [Bacillus cereus ATCC 14579]
 gi|30259754|gb|AAP28940.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42740150|gb|AAS44074.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47505731|gb|AAT34407.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49331922|gb|AAT62568.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51973965|gb|AAU15515.1| response regulator [Bacillus cereus E33L]
 gi|118419344|gb|ABK87763.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|164713413|gb|EDR18938.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167512034|gb|EDR87412.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529660|gb|EDR92409.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128164|gb|EDS97034.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670450|gb|EDT21190.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082359|gb|EDT67425.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561714|gb|EDV15684.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994450|gb|EDX58405.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196021629|gb|EDX60326.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028563|gb|EDX67170.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206734627|gb|EDZ51796.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206743566|gb|EDZ54993.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217067588|gb|ACJ81838.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218162461|gb|ACK62453.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218536647|gb|ACK89045.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221242544|gb|ACM15254.1| response regulator [Bacillus cereus Q1]
 gi|225786171|gb|ACO26388.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227003747|gb|ACP13490.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265461|gb|ACQ47098.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|296326522|gb|ADH09450.1| two-component response regulator VanRB [Bacillus thuringiensis
           BMB171]
 gi|300378693|gb|ADK07597.1| response regulator [Bacillus cereus biovar anthracis str. CI]
 gi|324328974|gb|ADY24234.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942852|gb|AEA18748.1| two-component response regulator VanRB [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 221

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR    
Sbjct: 63  ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 122

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++
Sbjct: 123 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +  V+++HI  LRK    KLG   + + + +GY I+
Sbjct: 183 G-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 220


>gi|226309940|ref|YP_002769834.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092888|dbj|BAH41330.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 6/161 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R +R      P++ ++   S+++ ++  D+G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LSLVRTLRTKGIMTPVLFLTAKDSVESRVEGLDAGADDYLVKPFAAEELTARVRALLRRQ 119

Query: 120 KVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N   E   GP+ +  +  D  V  E   L  +E  +L+Y + NR + + + QIF  +
Sbjct: 120 GKQNTEGELAYGPLSLKINEYDGFVDDEPMKLTTKEYELLKYFLQNREQILTRQQIFDRV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G+  EA    VV+ ++  LRKKL    GF  + + R +GY
Sbjct: 180 WGIDSEA-NYGVVDLYVHYLRKKLGAYEGF--IRTIRNVGY 217


>gi|187779416|ref|ZP_02995889.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
           15579]
 gi|187773041|gb|EDU36843.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
           15579]
          Length = 221

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 19/199 (9%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85
           +L   A + + A+E F  G  + ++    LP+I        IR  S VP+I ++     +
Sbjct: 27  YLVEVATDGLIAVEMFREGNFDLIILDVMLPKIDGFVVCEIIRKESSVPIIMLTALGEEE 86

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142
             +  F+  VDD + KP     ++ RV A+ RR   L+ +N+      I ++       V
Sbjct: 87  DEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNSTLTFEEITIYPSNYKTLV 146

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            G+   L  +E +ILE L++N G+  ++  + + I+G +D   +  V+++HI    K LR
Sbjct: 147 NGKEIELTYKEFQILEILISNVGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201

Query: 203 NKLGFDPVDSKRFLGYSID 221
            KL  D + + R +GY I+
Sbjct: 202 QKLNIDYIKTIRGVGYKIE 220


>gi|262089655|gb|ACY24751.1| two-component response regulator [uncultured organism]
          Length = 222

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 2/131 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
             P++ I+    +   +   D G DD + KP   RE+ AR+ A+ RR    +++  E G 
Sbjct: 72  NAPILVITARSEIDDKVSLLDLGADDYLVKPFDLRELEARLRALLRRSGGQASSSIEVGN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +     +  V G+   L RRE R+LE L+++ GK V K ++ + ++  FDE+V  N +
Sbjct: 132 LALDLAALNASVDGKALELGRREFRLLEILVSHVGKVVPKERLMNQLFN-FDESVSINAL 190

Query: 191 ESHISKLRKKL 201
           E HIS+LRKKL
Sbjct: 191 ELHISRLRKKL 201


>gi|315586395|gb|ADU40776.1| DNA-binding response regulator [Helicobacter pylori 35A]
          Length = 229

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55
           M VL+ ++  V  G I    + G++++GF      SLE  E+L      D+   +  ++ 
Sbjct: 7   MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 57

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +  + RI   HS + ++  SD P+ +  +  F+ G DD + KP  +R I A VA I
Sbjct: 58  DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 115

Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             RL+  S+N  E G + +  D       GR+  V+G+ F        +L +L  +R + 
Sbjct: 116 EARLRFWSSNVIEIGDLTISPDEEKIIYKGREVGVKGKPF-------EVLTHLARHRDQI 168

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+K Q+  AI+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 169 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 218


>gi|260431923|ref|ZP_05785894.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415751|gb|EEX09010.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 223

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 108/222 (48%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +G +A  G  GV  +   S+E     ++    D   ++  L   G  +  
Sbjct: 4   LMIEDAEDLAEGVVAHLGRSGVVCDLATSIEAARDFRAVQFYDAILLDINLP-DGSGLGF 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L  I     ++P++ ++   +++  +   D G DD + KP   RE+ AR+ A+ RR    
Sbjct: 63  LDEIRGGGDRIPVLMLTALTAVEDRVAALDKGADDYLGKPFDQRELEARLRALVRRDADR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + +   GP+      R   + G+   L  RE  +L+ L+ + G+ ++K +++ ++YG  
Sbjct: 123 KSEQITLGPLVYAPKDRSATLGGKRLNLTAREAAVLDALIRHEGQFLSKARLYDSLYGFE 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D  V  N +E +I++LRKK     G   + ++R +GY I  +
Sbjct: 183 DADVGVNAIELYIARLRKKFSGS-GV-AITTQRGVGYRIGLH 222


>gi|15603950|ref|NP_220465.1| transcriptional activator protein CZCR (czcR) [Rickettsia
           prowazekii str. Madrid E]
 gi|3860641|emb|CAA14542.1| TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR) [Rickettsia
           prowazekii]
 gi|292571668|gb|ADE29583.1| Transcriptional activator protein CzcR [Rickettsia prowazekii Rp22]
          Length = 237

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  + P++ +S        +  F SG DD + KP    E++AR+ AI RR   S
Sbjct: 63  LLRLRAAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRR---S 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A +      I V  D R  EV G+   L  +E  ILE L+  RG  + K    + +Y
Sbjct: 120 KGHAASIFRFDKISVNLDTRSVEVDGKKLHLTNKEYSILELLILRRGTILTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              DE  E  +++  I KLRKKL +  G  D +D+    GY +
Sbjct: 180 STVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221


>gi|254488127|ref|ZP_05101332.1| transcriptional regulator CtrA [Roseobacter sp. GAI101]
 gi|214044996|gb|EEB85634.1| transcriptional regulator CtrA [Roseobacter sp. GAI101]
          Length = 239

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     ++ +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLSRI--ETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +  +TG + V  D +   V  +   L  +E ++ E L   +G  + K    +
Sbjct: 117 RRYKGHSQSVIQTGQVSVNLDAKTVTVDDKTVHLTGKEYQMFELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL    G
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSTATG 206


>gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 799

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 5/154 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPI 131
            P++ ++        +   D+G DD + KP + +E+LARV A+ RR  +S+    + GP+
Sbjct: 73  TPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGGLSSTPLLQWGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +         +GE+  L  +E  ILE  + NR +  +++ +   ++  FDEA  EN V 
Sbjct: 133 NLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS-FDEAPTENAVR 191

Query: 192 SHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
           + I  LR+KL+ K G  P  +++   LGY ++ N
Sbjct: 192 TQIKSLRQKLK-KAGASPNLIETVYGLGYRLNKN 224


>gi|114569220|ref|YP_755900.1| transcription regulator CtrA [Maricaulis maris MCS10]
 gi|114339682|gb|ABI64962.1| cell cycle transcriptional regulator CtrA / two component
           transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 231

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL+  R+  A    P++ ++    +   +     G DD + KP H  E++AR+ AI 
Sbjct: 59  GFDVLKTLRV--AKVDTPILILTGNADIDNKVRGLGCGADDYMTKPFHKDEMVARIHAIV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +  +TG I V  D +  EV+G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSIIKTGSIGVNLDAKTVEVEGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
 gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
          Length = 225

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 104/198 (52%), Gaps = 15/198 (7%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           LV++GY  L  +DGV +++ F    +EE       +D+S +   ++       ++ R IR
Sbjct: 23  LVREGYNVLEAEDGVEAMDIF----YEE-------KDISLLILDVMMPRMDGWQVCREIR 71

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRA 126
             S+VP+I ++     +  L  FD GVD+ ++KP   + ++ARV AI RR   S+  +  
Sbjct: 72  ESSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAILRRTLGSDAGDVM 131

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           E G I +       ++ G+   L  +E  +L Y + NRG  +++ +I + ++  +D   +
Sbjct: 132 EAGGITIDKAAHIVKIDGKPIELSYKEFELLTYFVENRGIALSREKILNNVWN-YDYFGD 190

Query: 187 ENVVESHISKLRKKLRNK 204
              +++H+ KLR KL +K
Sbjct: 191 ARTIDTHVKKLRSKLGDK 208


>gi|167627435|ref|YP_001677935.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|241668005|ref|ZP_04755583.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876539|ref|ZP_05249249.1| two-component system response regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|167597436|gb|ABZ87434.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|254842560|gb|EET20974.1| two-component system response regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 228

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 78/147 (53%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R    +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+
Sbjct: 60  LEVLRNVRNKGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRI 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + ++    I+      +P  +     G + P+ ++E  +L  L+ N G+ V KTQ+ 
Sbjct: 120 DTRSGKSTKEEIKFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             +Y   D+ ++ N +E H+  LRKK+
Sbjct: 180 EEVYS-TDKEMDTNTLEVHMHNLRKKI 205


>gi|325663532|ref|ZP_08151942.1| hypothetical protein HMPREF0490_02683 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087057|ref|ZP_08336131.1| hypothetical protein HMPREF0987_02434 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470431|gb|EGC73662.1| hypothetical protein HMPREF0490_02683 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330409337|gb|EGG88784.1| hypothetical protein HMPREF0987_02434 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 224

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 3/164 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE    L   IRA    P++ ++        +  F  G DD + KP    E+ ARV A  
Sbjct: 56  GEDGFSLCGRIRAEVDCPILFLTAKTEDAALVQGFGLGADDYIKKPFSIAELRARVNAHL 115

Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR      RA   G +R     ++  V+ ++ PL + E  I E+L  + G+  +K Q++ 
Sbjct: 116 RREGRQPVRAMARGGVRFDMQAKEAMVEEQILPLTKGEYEICEHLALHAGQVFSKEQLYE 175

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           A++G FD   +   +  HI  +R KL+ K G  P+++   +GY 
Sbjct: 176 AVFG-FDAEGDPGTIAEHIKNIRAKLK-KYGKSPIETVWGMGYK 217


>gi|190890639|ref|YP_001977181.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190695918|gb|ACE90003.1| putative two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 225

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AE 127
           A +Q P++ ++   ++   +   D+G DD + KP H+ E+ AR+ A+ RR  V++    E
Sbjct: 69  AGAQTPVLVLTARGAIDERIAGLDAGADDYLAKPFHNGELTARIRALSRRSPVTSMPILE 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              +++    R     G    L   E+ +LE LM N GK VAKT+I  A +  F +    
Sbjct: 129 FAALKLDVASRQVTCAGHDVALAPSEKGLLELLMRNGGKVVAKTKIEHA-FSEFGDERSS 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N VE  +S+LRKKL        +++ R +GY +
Sbjct: 188 NAVELAVSRLRKKLEGHKTRLSIETIRGVGYMM 220


>gi|150388383|ref|YP_001318432.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948245|gb|ABR46773.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 236

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 21/214 (9%)

Query: 11  VKDGYIALFGDD-GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-------- 61
           +KD  I L  DD  +S      LE E ++ S   + + A E FL  K + VL        
Sbjct: 1   MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGL 60

Query: 62  ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              ++ + IR  S  P+I ++    L+  +     G DD V KP    E+LAR+ A+ RR
Sbjct: 61  DGYQVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRR 120

Query: 119 LKVSN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           ++  +        NR E   +    D     +  ++  +PRRE ++L+YLM    +   +
Sbjct: 121 IEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
            ++   I+G +D   E+ V++ +I +LRK+L++K
Sbjct: 181 EELIEGIWG-WDFEGEDRVIDLYIKRLRKRLKSK 213


>gi|153853122|ref|ZP_01994531.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814]
 gi|149753908|gb|EDM63839.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814]
          Length = 227

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 87/161 (54%), Gaps = 6/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + +++ +  ++ +S    +   ++  D+G +D + KP H +E+ AR+ ++ RR  V 
Sbjct: 65  LKELRQSNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFVQ 124

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   E+G I   +  R+   +     L R+E+ ILEYL+ N G+ V++ ++   ++   
Sbjct: 125 KDVCLESGDIMFDTIKREAYAKETKISLTRKEKGILEYLLLNLGRPVSQEELMEHVW--- 181

Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D +V+     +  H+S LR+KL+  LG+D + +K   GY I
Sbjct: 182 DASVDSFSGAIRVHMSSLRRKLKAVLGYDAIMNKVGEGYKI 222


>gi|60117371|gb|AAX14447.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila mojavensis]
          Length = 221

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 2/167 (1%)

Query: 37  WLQSSA-REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           W+ S+    D+  ++  L G  +    L R+  A  +VP++ +S   ++         G 
Sbjct: 5   WVSSNGDYYDLVILDIHLPGDIDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGA 64

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
           DD + KP H  E+LAR+ AI RR K    +  + G I +  D R  EV+G+   L  +E 
Sbjct: 65  DDYLTKPFHKSELLARIKAIVRRTKGHPESVIKIGNININFDHRIVEVKGKTVHLTNKEY 124

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++E L   +G  + K    + +Y   DE  +  +V+  + KLRKKL
Sbjct: 125 SMIELLALRKGTVLTKEMFLNHLYNGLDEPSDNKIVDVFMCKLRKKL 171


>gi|329896136|ref|ZP_08271349.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium IMCC3088]
 gi|328921955|gb|EGG29320.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium IMCC3088]
          Length = 214

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           L  I +   + P++ ++    +   +   D+G DD + KP    E+ AR+  + RRL   
Sbjct: 58  LASIRQKKHRFPILILTARGEVDDKVKGLDAGADDYMAKPFDFLELCARLRVLERRLGTA 117

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +      + +  +    EV G+   LPRRE  +L+ LM N+G+ V + Q+ S +Y   
Sbjct: 118 STSTISISNVVLHINTHQVEVGGKDLDLPRREYMLLKCLMENQGRVVTRDQLESRLYHWG 177

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           DE +  N +E H+  LRKKL +      + + R LGY++
Sbjct: 178 DE-ISSNALEVHVHHLRKKLPDAF----IKTIRGLGYTV 211


>gi|229137374|ref|ZP_04265986.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228646073|gb|EEL02295.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 229

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + RI     + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR   S
Sbjct: 68  IQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR---S 124

Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N      IR     +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  +
Sbjct: 125 GNLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +G FD      +VE ++  LRKKL    G+   + + R +GY
Sbjct: 185 WG-FDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224


>gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 231

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+   E+ R +RA S  P+I ++   S    +   + G DD V KP   RE++ARV A+ 
Sbjct: 57  GQSGTEVCRQLRARSSAPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116

Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR     ++     + GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q
Sbjct: 117 RRQGEPEELMTTTVQAGPVRMDIERHVVSVNGEQVSLPLKEFELLEMLLRNSGRVLTRGQ 176

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +   ++G  D   +   ++ H+    K+LR+K+  DP  S R+L
Sbjct: 177 LIDRVWG-SDYVGDTKTLDVHV----KRLRSKIEPDP-SSPRYL 214


>gi|15836991|ref|NP_297679.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|28199554|ref|NP_779868.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71274658|ref|ZP_00650946.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71899630|ref|ZP_00681784.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71901814|ref|ZP_00683880.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|170730925|ref|YP_001776358.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182682290|ref|YP_001830450.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|9105223|gb|AAF83199.1|AE003890_8 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|28057669|gb|AAO29517.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71164390|gb|EAO14104.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71728413|gb|EAO30578.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71730582|gb|EAO32659.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|167965718|gb|ACA12728.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182632400|gb|ACB93176.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307578567|gb|ADN62536.1| two component transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 227

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 4/149 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ ++   S Q+ ++    G DD + KP H  E+LARV A+ RR    S    E G 
Sbjct: 72  KFPVLILTARSSWQSKVEGLKQGADDYLVKPFHVEELLARVNALLRRAAGWSKPTLECGS 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
           + +    +   V G    L   E ++LEYLM + G+ V+K  +   IY   FD   + NV
Sbjct: 132 VALDLAAQTVSVNGTNVDLTSYEYKVLEYLMVHAGELVSKADLTEHIYQQDFDR--DSNV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +E  I +LRKKL       P+++ R  GY
Sbjct: 190 LEVFIGRLRKKLDADGDLKPIETVRGRGY 218


>gi|312959545|ref|ZP_07774062.1| DNA-binding response regulator [Pseudomonas fluorescens WH6]
 gi|311286262|gb|EFQ64826.1| DNA-binding response regulator [Pseudomonas fluorescens WH6]
          Length = 223

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 76/140 (54%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+      +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  + 
Sbjct: 63  LARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLG 122

Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             R +T  + V+  D R   V GE+  L  RE+ +LE L+A  G+ ++K Q+ S ++GL 
Sbjct: 123 GERQQTCGVLVYDLDTRRFTVGGELMTLTSREQAVLEALIARPGRVMSKEQLASQVFGL- 181

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE    + +E ++ +LRKKL
Sbjct: 182 DEEASPDAIEIYVHRLRKKL 201


>gi|306825660|ref|ZP_07458999.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432021|gb|EFM34998.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 218

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 109/225 (48%), Gaps = 18/225 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + EE L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGISDYLADCG--YETIQAADGEEALEQFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R    
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118

Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +TG I  + D +         + G+   +  +E  IL+YL+ N G+ + ++QI  A
Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASIAGQEIAINAKELEILDYLVKNEGRALTRSQIIDA 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + DE   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 176 VWKVTDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|188588874|ref|YP_001919596.1| two-component response regulator [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499155|gb|ACD52291.1| two-component response regulator [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 228

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 79/152 (51%), Gaps = 4/152 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+ K    ++  + IR  S +P+I ++    L   +  FD G DD + KP    E+LAR+
Sbjct: 57  LLTKNLNGMDFLKWIRKQSNIPMIVVTSNNCLFDKVLAFDIGADDYILKPFKVEELLARI 116

Query: 113 AAIYRRLKVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            AI RR  + +++++T  I   S      +  ++G +  LP +E  +L +L+ N  K   
Sbjct: 117 KAIIRRCSIESDKSDTISISDLSVNLSTYEVFLKGNIINLPPKEFELLVFLLKNTNKVFT 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + ++   I+G  +++ +   V+ HI +LR+K 
Sbjct: 177 RKELLDEIWGNHNKS-DCRTVDVHIKRLREKF 207


>gi|325261572|ref|ZP_08128310.1| response regulator DrrA [Clostridium sp. D5]
 gi|324033026|gb|EGB94303.1| response regulator DrrA [Clostridium sp. D5]
          Length = 233

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 23/215 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L   GY+A    DG  LEG  +   +++       D+  ++  L    G  V E+   IR
Sbjct: 30  LTDAGYVAHVAGDG--LEGITAFRQKQY-------DLVLLDLMLPKIDGYAVCEM---IR 77

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S VP++ ++        L  FD   DD + KP   + +L RV A+ RR +  +   E 
Sbjct: 78  KESNVPVLMLTALDEEDDQLKGFDVLADDYITKPFSVKLVLKRVEALLRRTREDHCEDEN 137

Query: 129 GPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             +   S   DP      V GE  PL + E  +L  LM N+G+   + ++   ++G +D 
Sbjct: 138 ALLCHGSIQLDPVSLRVYVSGEDVPLTKLEFDLLHLLMKNKGRVFTRDELLDLVWG-YDF 196

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           A  +  V  HI  LR+    KLG D +++ R +GY
Sbjct: 197 AGYDKAVNIHIMNLRR----KLGADCIETIRGVGY 227


>gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 226

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 25/218 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L ++G+     DDG+        EFE       R     +   L+  G+   E+ R IR 
Sbjct: 21  LEREGFEVRIADDGLK----AVTEFE-------RHGADLVLLDLMLPGQPGTEVIRQIRL 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNR 125
           +SQVP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR     ++ +N 
Sbjct: 70  NSQVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRQGEGEELISNV 129

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              GP+R+  +     V+     +P +E  +LE L+ N G+ + + Q+   ++G  D   
Sbjct: 130 VTAGPVRMDVERHVVSVENTEVSMPLKEFELLEMLLRNAGRVLTRGQLIDRVWG-SDYVG 188

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGY 218
           +   ++ H+    K+LR+K+  DP   +R      LGY
Sbjct: 189 DTKTLDVHV----KRLRSKIEADPAVPERLVTVRGLGY 222


>gi|307244376|ref|ZP_07526489.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492277|gb|EFM64317.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 224

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 86/152 (56%), Gaps = 5/152 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR-AETGP 130
            P++ ++   +L   ++ F  G +D + KP +  E++ARV AI R   K+ + +  E   
Sbjct: 72  TPILILTAKEALDDKVEAFTLGANDYLTKPFYMDELVARVYAILRTNGKIKDKKYLEFKD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +R+ S+     +  E   L  ++ ++LEY + N+G  + K QI+  I+G+  +A  E +V
Sbjct: 132 LRIDSEKNSVYINDEEIELQNKQFKLLEYFVLNKGSILLKEQIYDRIWGIDSDATIE-IV 190

Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           E ++S LRKKL +K  +D  + +KR +GY +D
Sbjct: 191 EVYVSNLRKKL-SKYDYDKYIKTKRKVGYILD 221


>gi|291548407|emb|CBL21515.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 246

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGK-GE 58
           M   ++D   +++  +      G   EGF +  E +  ++ +  E +  ++  L G+ G 
Sbjct: 23  MIYCVEDERNIRELLVYTLETTGFEAEGFETGAELDTAMKKNMPELI-LLDIMLPGEDGY 81

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +L+  +       +P+I ++   +    +   + G DD + KP    E +ARV A+ RR
Sbjct: 82  NILKRLKSDTRTRDIPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLRR 141

Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +   E     +RV     +   QGEV  L R+E  +LEYLM N+G  +++ QI   
Sbjct: 142 CARQSEERELHCKGLRVNVSRHEVSYQGEVKELTRKEFELLEYLMENKGLVMSRNQILCH 201

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D   E   V+ H+  LR+KL      + +++ R +GY I
Sbjct: 202 VWG-YDFDGETRTVDVHVRTLRQKLGE--AGNLIETVRGVGYRI 242


>gi|228917667|ref|ZP_04081208.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228923764|ref|ZP_04087042.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228930063|ref|ZP_04093073.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228936917|ref|ZP_04099666.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228942200|ref|ZP_04104740.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228948764|ref|ZP_04111041.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228955296|ref|ZP_04117304.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228961275|ref|ZP_04122894.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228975129|ref|ZP_04135688.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981768|ref|ZP_04142063.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228988285|ref|ZP_04148380.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229049720|ref|ZP_04194277.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|229072518|ref|ZP_04205720.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|229082277|ref|ZP_04214740.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|229112476|ref|ZP_04242013.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|229124573|ref|ZP_04253758.1| Two-component response regulator vanRB [Bacillus cereus 95/8201]
 gi|229130288|ref|ZP_04259247.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4]
 gi|229142354|ref|ZP_04270873.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26]
 gi|229147580|ref|ZP_04275925.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24]
 gi|229153223|ref|ZP_04281402.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|229158637|ref|ZP_04286695.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342]
 gi|229181325|ref|ZP_04308655.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|229187280|ref|ZP_04314425.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1]
 gi|229193313|ref|ZP_04320263.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|229199181|ref|ZP_04325862.1| Two-component response regulator vanRB [Bacillus cereus m1293]
 gi|228584287|gb|EEK42424.1| Two-component response regulator vanRB [Bacillus cereus m1293]
 gi|228590114|gb|EEK47983.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228596290|gb|EEK53965.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1]
 gi|228602218|gb|EEK59709.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|228624621|gb|EEK81390.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342]
 gi|228630322|gb|EEK86972.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|228635870|gb|EEK92355.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24]
 gi|228641124|gb|EEK97436.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26]
 gi|228653221|gb|EEL09100.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4]
 gi|228658913|gb|EEL14568.1| Two-component response regulator vanRB [Bacillus cereus 95/8201]
 gi|228670856|gb|EEL26163.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|228700709|gb|EEL53232.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228710494|gb|EEL62467.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|228722633|gb|EEL74021.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|228771457|gb|EEM19928.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228777880|gb|EEM26152.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228784650|gb|EEM32670.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228798396|gb|EEM45390.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804429|gb|EEM51040.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228810896|gb|EEM57240.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228817534|gb|EEM63619.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228822746|gb|EEM68629.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829562|gb|EEM75189.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228835893|gb|EEM81256.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228841904|gb|EEM87010.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 216

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR    
Sbjct: 58  ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 117

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++
Sbjct: 118 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +  V+++HI  LRK    KLG   + + + +GY I+
Sbjct: 178 G-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 215


>gi|39934984|ref|NP_947260.1| two-component transcriptional regulator FeuP [Rhodopseudomonas
           palustris CGA009]
 gi|192290518|ref|YP_001991123.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39648835|emb|CAE27356.1| two-component transcriptional regulator FeuP, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192284267|gb|ACF00648.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 224

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  R    +P++ ++        +  FD+G DD V KP H  E+LAR+ A+ 
Sbjct: 59  GISVLEAWR--RNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALL 116

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    + +    GP+ + +      V G    L   E R+L YLM + G+ V++T++  
Sbjct: 117 RRSAGHAQSELTCGPVVLDTRTGRVSVSGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVE 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   FD   + N +E  + ++RK    KLG D + + R LGY
Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRK----KLGVDIIQTVRGLGY 214


>gi|154247416|ref|YP_001418374.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161501|gb|ABS68717.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 233

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 3/144 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A  + P++ +S   + +  +  F  G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRALRVAKVKTPILILSGLANTEDKVKGFGFGADDYLTKPFHKDEMVARIHAIVRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  +TG + V  D +  EV+     L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVENNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
             DE  E  +++  I KLRKKL N
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203


>gi|145294521|ref|YP_001137342.1| hypothetical protein cgR_0476 [Corynebacterium glutamicum R]
 gi|140844441|dbj|BAF53440.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 232

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 14/191 (7%)

Query: 27  EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF+++   +    L   +R ++  +   L+  G    ++ + +R+ S VP+I ++   S
Sbjct: 24  EGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTDVCKELRSVSTVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP----------IRV 133
               +   + G DD V KP   RE++AR+ A+ RR  V+   AE  P          +R+
Sbjct: 84  EIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGVTETEAEELPLDDQILEGGRVRM 143

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D     V GE   +P +E  +LEYL+ N G+ + + Q+   I+G  D   +   ++ H
Sbjct: 144 DVDSHTVTVDGEPVSMPLKEFDLLEYLLRNAGRVLTRGQLIDRIWG-ADYVGDTKTLDVH 202

Query: 194 ISKLRKKLRNK 204
           + +LR K+  +
Sbjct: 203 VKRLRSKIEEE 213


>gi|254454488|ref|ZP_05067925.1| DNA-binding response regulator CtrA [Octadecabacter antarcticus
           238]
 gi|198268894|gb|EDY93164.1| DNA-binding response regulator CtrA [Octadecabacter antarcticus
           238]
          Length = 246

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R   + P++ +S     ++ L  F  G DD + KP H  E++AR+ AI 
Sbjct: 41  GHEVLRQLRLSRI--ETPILILSGEDGTESKLKGFGFGADDYMTKPFHREELVARIHAII 98

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +  +TG I V  D +  EV      L  +E ++LE L   +G  + K    +
Sbjct: 99  RRSKGHAQSIIKTGVIAVNLDAKTVEVDSSPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 158

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL    G
Sbjct: 159 HLYGGMDEP-ELKIIDVFICKLRKKLTEATG 188


>gi|89069237|ref|ZP_01156604.1| two-component system, regulatory protein [Oceanicola granulosus
           HTCC2516]
 gi|89045235|gb|EAR51302.1| two-component system, regulatory protein [Oceanicola granulosus
           HTCC2516]
          Length = 223

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 107/222 (48%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
            ++++D   V     A  G  G++ +    + E +++L +    DV  ++  L  G G  
Sbjct: 3   ILIVEDSEDVAAAITAALGRAGMACDRAAGAREAQDYLAAET-YDVVVLDIHLPDGDGRT 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   R  RA S+ P++ ++    + + ++  D+G DD + KP   RE+ ARV  + RR 
Sbjct: 62  ILSDLR--RAGSRTPVLMLTAELEVSSRVNALDAGADDYLVKPFDLRELEARVRVLGRRG 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + R   G +      R   + G    L RRE  +L  L+A R + +AK QI   ++
Sbjct: 120 DSAGSARISVGDLEFDQAARTVRIAGAAVALTRREVSLLGLLVARRDRIIAKEQILERLF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + DE V  N VE ++++LRKKL        + + R LGY +
Sbjct: 180 SM-DEDVGLNTVELYVARLRKKL--AASSVSIVTHRGLGYQL 218


>gi|319936946|ref|ZP_08011356.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
 gi|319807882|gb|EFW04461.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
          Length = 219

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 1/140 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IR  S +P++ IS     +  L  ++ G DD ++KP     + A+  A+ +RL  
Sbjct: 60  EVCKLIRQKSDIPILFISALSEDENKLKGYELGADDFISKPFTPSLLYAKCNALLKRLNK 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N   + G I +  D  +  V      L  +E  IL Y + N+ K +++ Q+   ++G +
Sbjct: 120 GNESLDVGMIHIDEDTHEVFVNDVEIQLSHKEYLILIYFIENKRKILSRDQLLDHVWG-Y 178

Query: 182 DEAVEENVVESHISKLRKKL 201
           D   ++ +V++++ KLRKKL
Sbjct: 179 DYYGDQRIVDTYVKKLRKKL 198


>gi|296281989|ref|ZP_06859987.1| DNA-binding response regulator CtrA [Citromicrobium bathyomarinum
           JL354]
          Length = 231

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 2/142 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L ++  A  Q P++ +S    + + +  F  G DD V KP H  E++AR+ A+ RR K  
Sbjct: 63  LKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELVARIHAVVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +   TG + V  D +  EV      L  +E  +LE L   +G  + K    + +YG  
Sbjct: 123 SQSVIRTGKLAVNLDAKTVEVDSARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           DE  E  +++  I KLRKKL +
Sbjct: 183 DEP-ELKIIDVFICKLRKKLSH 203


>gi|157963325|ref|YP_001503359.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848325|gb|ABV88824.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 224

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D  L+ +  +      G   +  + +   ++L      D   ++  L  G G ++
Sbjct: 3   LLLVEDNTLLVEELVKQLKQAGYVTDSTDKVSEADYLIKETNYDCVILDIGLPDGNGLEL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R    H+  P+I ++        ++ F+SG DD + KP H +E+L R+ A+ +R  
Sbjct: 63  LESWREQGIHT--PVIMLTARSQWHEKVEGFNSGADDYLGKPFHTQELLVRIQALIQRAH 120

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + N+  T       +G+     GE  F L   E R+L+  + +  K ++K Q+   
Sbjct: 121 GKANTPNKQLTYAGVALDEGQQSVTVGEQTFELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +Y  FD+  E NVVE +++ LRK    KLG   ++++R  GY
Sbjct: 181 LYQ-FDDEKESNVVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|57239513|ref|YP_180649.1| hypothetical protein Erum7860 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161592|emb|CAH58520.1| putative response regulator component of a two-component regulatory
           system [Ehrlichia ruminantium str. Welgevonden]
          Length = 267

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
           +VP++ +S   S+   +     G DD V KP H  E+LAR+ AI RR +    +    G 
Sbjct: 75  KVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVRRTRGHPESIVRVGN 134

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +  D +  E  GE+  L ++E  ++E L +  G  + K    S +Y   DE  ++ ++
Sbjct: 135 IAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 194

Query: 191 ESHISKLRKKLR 202
           +  + KLRKKL+
Sbjct: 195 DVFMCKLRKKLK 206


>gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
 gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
          Length = 230

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 3/152 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
            VP+I ++        +   D+G DD V KP    E+ AR+ A+ RRL+  ++ +R   G
Sbjct: 77  NVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRRLRPGLAEDRVRCG 136

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +       +  G    L   E R+L++ M + G+  ++ Q+  A++G  D  VE   
Sbjct: 137 DIIIDRVAHRVKRNGAEVHLGPTEFRLLDHFMQHPGRVFSREQLLDAVWG-SDVYVEART 195

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           V+ HI +LRK L      DP+ + R  GYS+D
Sbjct: 196 VDVHIGRLRKALNAADAGDPIRTVRSAGYSLD 227


>gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei
           TW08/27]
 gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma
           whipplei TW08/27]
          Length = 227

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+  A  + P+I +S   S +  +     G DD V KP    EILARVAAI RR K+ + 
Sbjct: 68  RLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKIDDV 127

Query: 125 RAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            A    G + +  +  +  ++G +  L   E ++L Y M N  + ++K+QI   ++  +D
Sbjct: 128 DATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD-YD 186

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              + ++VES+IS +R+KL        + +KR  GY
Sbjct: 187 FDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGY 222


>gi|15895992|ref|NP_349341.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025771|gb|AAK80681.1|AE007771_1 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding) [Clostridium acetobutylicum ATCC 824]
 gi|325510145|gb|ADZ21781.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding) [Clostridium acetobutylicum EA 2018]
          Length = 225

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 9/152 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE+VL     I    Q+P+I +S    L T L     G DD + KP ++ E++ R+ A+ 
Sbjct: 60  GEQVLTK---INEQFQIPIICVSAKDDLDTKLGMIRDGADDYITKPFNNEELIVRIGAVL 116

Query: 117 RRLKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR+         NR     + + S+     +  E   L  +E +ILE L++N  K   K 
Sbjct: 117 RRMNKGTSIDKTNRFTFKDLVLDSENHIVTINNEPIELTVKEYKILELLISNPKKVFTKQ 176

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            IF +++   +  ++E VV  H+S LR KL++
Sbjct: 177 NIFESVWS-EEYILDERVVTVHVSNLRNKLKH 207


>gi|312888723|ref|ZP_07748290.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311298826|gb|EFQ75928.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 225

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 87/173 (50%), Gaps = 18/173 (10%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G+G  VL+  R    +  V +I  S   S+   +   + G DD + KP H  E+ AR+AA
Sbjct: 57  GEGFAVLDFLRTAMRNEAVLII--SARNSIDDKIKGLNIGADDYLTKPFHLAELKARLAA 114

Query: 115 IYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           IYRR K SN    +  + VF++      GR   V      L R+E  +L Y +AN+GK V
Sbjct: 115 IYRR-KTSN----SSNLLVFNEITIDLLGRSVYVNDTTLILTRKEYDMLLYFIANKGKVV 169

Query: 169 AKTQIFSAIYGLFDEA-VEEN--VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +K  +   ++G  DE  + +N   + +HI  LRKK+ +    D + S   +GY
Sbjct: 170 SKNALAEHLWG--DEMDMHDNFDFIYTHIKNLRKKMLDLNAHDYLKSVYGIGY 220


>gi|2598275|emb|CAA73687.1| FeuP protein [Brucella suis 1330]
          Length = 229

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 8/155 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           R+   +P++ ++        +   D+G DD + KP H  E+LAR+ A+ RR    +++  
Sbjct: 68  RSGRTIPVLMLTARDRWSDKVAGIDAGADDYITKPFHIEEVLARLRALIRRAAGHASSEF 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+ + +      + G V  L   E R+L Y+M N  + V++T++   +Y   FD   
Sbjct: 128 VCGPLHLDTKTSKASIDGVVLKLTSHEYRLLSYMMNNMDEVVSRTELVEHLYDQDFDR-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + +LRK    K+G D +++ R +GY +
Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 216


>gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435]
 gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR
 gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 219

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 2/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R     P+I I+        +   D G DD + KP    E+ AR+ A+ RR +
Sbjct: 61  LEICRRVRQEQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRR-Q 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  +   I++  D  +  + GE     + E  +L  L  NR + + + QI   ++G 
Sbjct: 120 PQKDIIDINGIKIDVDAFNVTINGEQLDFTKTEYDLLYLLATNRNRVLQREQILDHVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 179 YDSEVETNVVDVYIRYLRNKLKPYGKDKTIETVRGVGYVI 218


>gi|68171373|ref|ZP_00544767.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658273|ref|YP_507798.1| DNA-binding response regulator [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67772423|gb|AAY79413.1| transcriptional activator protein [Ehrlichia chaffeensis]
 gi|67999198|gb|EAM85854.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599730|gb|ABD45199.1| DNA-binding response regulator [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 265

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
           +VP++ +S   S+   +     G DD V KP H  E+LAR+ AI RR +    +    G 
Sbjct: 75  KVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVRRTRGHPESIVRVGN 134

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +  D +  E  GE+  L ++E  ++E L +  G  + K    S +Y   DE  ++ ++
Sbjct: 135 IAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 194

Query: 191 ESHISKLRKKLR 202
           +  + KLRKKL+
Sbjct: 195 DVFMCKLRKKLK 206


>gi|331270877|ref|YP_004385588.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
 gi|329127269|gb|AEB77213.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
          Length = 231

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 9/144 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ ++ Y         + +G DD V KP  H E+L +V A+ RR ++   + 
Sbjct: 71  IRKKSFVPILFLTAYSQESDKTIGYSAGADDYVTKPFSHSELLLKVKALLRRYQIYQPQT 130

Query: 127 ETGPIRVFSDGR--DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    ++   G   D E Q     G+  PL   E +ILE L+ NR +  +   I+++++ 
Sbjct: 131 KIQSSKIVIQGLTVDIETQTVLCDGKHIPLTHTEYKILELLITNRKRIFSINHIYNSVWQ 190

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
             D+ V ++ V  HI  LRKK+ N
Sbjct: 191 --DDIVADSAVMVHIKNLRKKIEN 212


>gi|326204762|ref|ZP_08194617.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985133|gb|EGD45974.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 223

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 107/212 (50%), Gaps = 15/212 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L K GY     +DG  LE ++ +E         ++ +  + + ++       EL + +R
Sbjct: 20  VLAKHGYSYYVANDG--LEAWDIIE---------KQYIDLVISDIMMPNMDGYELVKSLR 68

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
            +   +P++ I+   + +   + F  G DD + KP++  E++ RV A+ RR ++ N R  
Sbjct: 69  DNGYNMPVLMITAKDTFEDMKNGFRVGTDDYMIKPVNVNEMILRVNALLRRAQIVNERKL 128

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +  D     ++GE   +P++E  IL  L++N  K   K Q+   I+G+ D   +
Sbjct: 129 IFGDMELSYDELSVNIKGEYMLIPQKEFYILYKLLSNPNKAFTKQQLMDEIWGM-DTESD 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + ++ HIS+LR++ ++   F+ + + R LGY
Sbjct: 188 PHTLDVHISRLRERFKDNNQFE-IKTIRGLGY 218


>gi|222107155|ref|YP_002547946.1| two component response regulator [Agrobacterium vitis S4]
 gi|221738334|gb|ACM39230.1| two component response regulator [Agrobacterium vitis S4]
          Length = 220

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 19/162 (11%)

Query: 67  IRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN- 124
           +R H  V P+I ++ +  +   ++  +SG DD + KP +  E+ AR++A+ RR     N 
Sbjct: 66  LREHGDVTPIIILTAHDQISDRIEGLNSGADDYLVKPFNLDELTARISAVARRYAAKPNP 125

Query: 125 -----RAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                  E  P  R  +DG D         L  RE  +L+ L+A  G  V+K++I  A+Y
Sbjct: 126 IIRIGTLEINPAERRIADGADS------ISLSSREWAVLDALLARPGAVVSKSRIEEALY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F   +E N VE ++S+LRK    K+G D + + R +GYSI
Sbjct: 180 A-FGSEIESNTVEVYVSRLRK----KIGKDRLLTVRGVGYSI 216


>gi|167625511|ref|YP_001675805.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167355533|gb|ABZ78146.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 224

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D  L+ +  I      G   +  + +   ++L      D   ++  L  G G ++
Sbjct: 3   LLLVEDNTLLVEELIKQLKQAGYVTDTTDKVSEADYLIKETNYDCVILDIGLPDGNGLEL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R    H+  P+I ++        ++ F+SG DD + KP H +E+L R+ A+ +R  
Sbjct: 63  LETWREQGIHT--PVIMLTARSQWHEKVEGFNSGADDYLGKPFHTQELLVRIQALIQRAH 120

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + N+  T       +G+     GE  + L   E R+L+  + +  K ++K Q+   
Sbjct: 121 GKANTPNKQLTYAGVALDEGQQSVTVGEQTYELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +Y  FD+  E NVVE +++ LRK    KLG   ++++R  GY
Sbjct: 181 LYQ-FDDEKESNVVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|145594981|ref|YP_001159278.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145304318|gb|ABP54900.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 334

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 6/142 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+IR+ S+VP++ I+   S    +   +SG DD V KP     ILAR++A+ RR +   +
Sbjct: 170 RMIRSISEVPVVVITARRSETDIIHLLNSGADDYVTKPFSGEHILARISAVLRRYRSGTD 229

Query: 125 RA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           R        GP+ +    R   + G    L RRE  +L YL    G+ V++ ++ + ++ 
Sbjct: 230 REGPGAITVGPLVIGRKERRVTMHGNPLKLTRREYDVLTYLAERVGQVVSRRELMTEVWR 289

Query: 180 LFDEAVEENVVESHISKLRKKL 201
                 EE  ++ HIS LR+KL
Sbjct: 290 QARIG-EEQTIDVHISWLRRKL 310


>gi|205372167|ref|ZP_03224982.1| two component transcriptional regulator [Bacillus coahuilensis
           m4-4]
          Length = 225

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 7/163 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR    +P++ ++     +  +  F  G DD ++KP    E++ RV A+ RR K+
Sbjct: 62  ELCREIRDLYDLPILMVTAKGESEDKIKGFQQGTDDYISKPFDPHELIMRVKALLRRYKI 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N   +     V  D +  EV  +  P+  P +E ++L  L ++ G+  ++ Q+   I+G
Sbjct: 122 -NTHEKVTIANVVIDAKSVEVTIDQEPIAFPLKEFQLLHKLASHPGQVFSREQLIEEIWG 180

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             FD    +  V+SHI K+RKKL  +  FD V + R LGY ++
Sbjct: 181 SDFDGF--DRTVDSHIKKIRKKLSQQTAFDIV-TIRGLGYRLE 220


>gi|148998276|ref|ZP_01825745.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP11-BS70]
 gi|149010780|ref|ZP_01832151.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP19-BS75]
 gi|168485715|ref|ZP_02710223.1| VncR, response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|168576498|ref|ZP_02722372.1| VncR, response regulator [Streptococcus pneumoniae MLV-016]
 gi|307067219|ref|YP_003876185.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307126802|ref|YP_003878833.1| VncR, response regulator [Streptococcus pneumoniae 670-6B]
 gi|147755919|gb|EDK62963.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP11-BS70]
 gi|147765261|gb|EDK72190.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP19-BS75]
 gi|183571082|gb|EDT91610.1| VncR, response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|183577727|gb|EDT98255.1| VncR, response regulator [Streptococcus pneumoniae MLV-016]
 gi|301793794|emb|CBW36185.1| two-component system, response regulator [Streptococcus pneumoniae
           INV104]
 gi|306408756|gb|ADM84183.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306483864|gb|ADM90733.1| VncR, response regulator [Streptococcus pneumoniae 670-6B]
          Length = 218

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 109/225 (48%), Gaps = 18/225 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R    
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118

Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +TG I  + D +         + G+  P+  +E  IL+YL+ N G+ + ++QI  A
Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASIAGQEVPINAKELEILDYLVKNEGRALTRSQIIDA 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   DE   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|186472785|ref|YP_001860127.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195117|gb|ACC73081.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 237

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   +      +   D  +L+     E  + L S  R DV  ++  L    G+ V
Sbjct: 15  LLLIEDNPTLSHWLARMLEQDAFALDTVQDGEAADQLLSMNRYDVVLLDLNLPRLSGKNV 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R+ +     P++ ++   S+   ++   +G DD + KP   RE++ARV  + RR  
Sbjct: 75  LR--RLRQRGDATPVMILTASGSIDEKVELLGAGADDYLVKPFEVRELIARVKVMIRRQS 132

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  N    G +    D R   ++G    +  RER +LE L+   GK V+K  +  +I+ 
Sbjct: 133 ASTANEVSCGDLAFDIDTRQFTLKGVPLNVTPRERSVLETLILRMGKTVSKAALMDSIFT 192

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             D+   E+ +E ++S+LRKKL
Sbjct: 193 -HDDQPSEDALEIYVSRLRKKL 213


>gi|326314873|ref|YP_004232545.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371709|gb|ADX43978.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 237

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 7/175 (4%)

Query: 48  AIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106
           A +A  +G G  VL   R  RA   + P++ ++     +  +   D+G DD + KP    
Sbjct: 58  AAQASPVGSGLAVL---RAARARGDRTPVLVLTARDRTEERIAGLDAGADDYLGKPFDLA 114

Query: 107 EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           E+ AR+ A+ RR + +++R   G + +    R   + G+ F LP RE  +L  LM   G+
Sbjct: 115 EVEARLRALVRRTQGTDDRTSAGTLVLDRRARRFTLHGQPFELPAREFEVLWELMTPPGR 174

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            V+K  +   +   FD+ + +N +E+ IS+LRKKL+       + + R LGY ++
Sbjct: 175 VVSKRSLSDKLSD-FDDMLGDNALEAFISRLRKKLQGSGA--GIRTLRGLGYMLE 226


>gi|56551153|ref|YP_161992.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761507|ref|ZP_04759595.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753198|ref|YP_003226091.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56542727|gb|AAV88881.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374414|gb|EER63911.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552561|gb|ACV75507.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 225

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 87/161 (54%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R  +   ++P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR    
Sbjct: 63  LDRWRKEGREMPVLVLTARDSWSDKVAGLDAGADDYLTKPFQTEELIARLRALIRRASGN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           +++    G +R+ +      + GE   L  +E ++L YLM ++GK V++T++   IY   
Sbjct: 123 ASSELTAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLMHHKGKVVSRTEMIEHIYDQD 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + N +E  ++++RK    KLG D + + R LGY+++
Sbjct: 183 FDR--DSNTIEVFVTRIRK----KLGQDVITTIRGLGYALN 217


>gi|114562306|ref|YP_749819.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114333599|gb|ABI70981.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 219

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 14/220 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI---GKGEK 59
           +L++D  L+  G +      G+ ++   S  + +   +   ED SAI   L    G G  
Sbjct: 4   LLVEDNKLLAQGIVMSLAKSGIQVDHLAS--YNQAQIALENEDFSAIILDLSLPDGNGAD 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  R  +    +P+I ++      T L   D G DD ++KP   RE++AR+ AI RR 
Sbjct: 62  LLKQWR--KNGISLPIIVLTANTDFDTRLMCLDIGADDYLSKPFDVRELIARLKAIIRRQ 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + NN+   G + +     +   + E+  L RRE ++L     + G+ + + Q+    Y
Sbjct: 120 HGLDNNQFSYGALNIDFARCEVHFRDELVSLSRREYQLLLEFAQSAGRVLTRNQLEQLTY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G +DE V  N +E HI  LRKK   +L    + + R +GY
Sbjct: 180 G-WDE-VGSNSIEVHIHHLRKKTATEL----IKTVRGIGY 213


>gi|299134363|ref|ZP_07027556.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591110|gb|EFI51312.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 233

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL+  R+ +   + P++ +S    ++  +     G DD + KP H  E++AR+ AI 
Sbjct: 59  GYEVLKQLRVSKI--KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +  +TG + V  D +  EV G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVIQTGDLIVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            +YG  DE  E  +++  I KLRKKL N
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAN 203


>gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 250

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 4/147 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ RI+R  SQVP++ ++   + +  L   D G DD + KP   RE+ ARV A+ RR +
Sbjct: 62  LDVCRILRTDSQVPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALLRRSR 121

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + + +   +  + GE+  L  +E  IL  L A  G+   + QI   +
Sbjct: 122 AITGEPTLIRAGALEIDTACFEVRLAGELIALTGKEFAILALLAAEPGRAFTRAQIIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G F++ V E  V++H+  LR+KL  +
Sbjct: 182 FG-FEQNVLERTVDAHVMNLRRKLEQR 207


>gi|73667430|ref|YP_303446.1| response regulator receiver: C terminal [Ehrlichia canis str. Jake]
 gi|72394571|gb|AAZ68848.1| Response regulator receiver: C terminal [Ehrlichia canis str. Jake]
          Length = 266

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
           +VP++ +S   S+   +     G DD V KP H  E+LAR+ AI RR +    +    G 
Sbjct: 75  KVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVRRTRGHPESIVRVGN 134

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +  D +  E  GE+  L ++E  ++E L +  G  + K    S +Y   DE  ++ ++
Sbjct: 135 IAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 194

Query: 191 ESHISKLRKKLR 202
           +  + KLRKKL+
Sbjct: 195 DVFMCKLRKKLK 206


>gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 226

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R+ S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRSRSSVPIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVLRRRGD 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +  +  E GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 VEALVESALEAGPVRMDVERHVVSVDGEPVALPLKEFDLLELLLRNAGRVLTRVQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
           +G  D   +   ++ H+    K+LR K+  DP + K     R LGY ++
Sbjct: 182 WG-SDYVGDTKTLDVHV----KRLRAKIEPDPANPKYLVTVRGLGYKLE 225


>gi|86751020|ref|YP_487516.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|91978137|ref|YP_570796.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|86574048|gb|ABD08605.1| two component transcriptional regulator, winged helix family / cell
           cycle transcriptional regulator CtrA [Rhodopseudomonas
           palustris HaA2]
 gi|91684593|gb|ABE40895.1| cell cycle transcriptional regulator CtrA [Rhodopseudomonas
           palustris BisB5]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K  + +  +TG 
Sbjct: 72  KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKLRN 203
           +  I KLRKKL N
Sbjct: 191 DVFICKLRKKLAN 203


>gi|323127354|gb|ADX24651.1| transcriptional regulatory protein [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 224

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 2/148 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130
           ++P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K ++     G 
Sbjct: 72  KIPVLIMTAKESLDDKGQGFELGADDYLTKPFYLEELKMRIQALLKRTGKFTDKNLAFGN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V    ++ +V G    L  +E  +L YL+ N+   + KTQIF  ++G FD     +VV
Sbjct: 132 VVVDLGQKEVQVDGRPIELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG-FDSDTTISVV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E ++SK+RKKL+     D + + R +GY
Sbjct: 191 EVYVSKIRKKLKGTDFVDKLQTLRSVGY 218


>gi|238762221|ref|ZP_04623193.1| Two-component response regulator of virulence determinant [Yersinia
           kristensenii ATCC 33638]
 gi|238699568|gb|EEP92313.1| Two-component response regulator of virulence determinant [Yersinia
           kristensenii ATCC 33638]
          Length = 223

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 114/224 (50%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D AL++        + G  ++   ++ E + +LQ  A  D++ I+  L   GE  L
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHA-PDIAIIDLGL--PGEDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR +
Sbjct: 61  SLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNI 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKK++ K   + + + R  GY  D N
Sbjct: 181 -DAELRESHTIDVLMGRLRKKMQAKHEGEVITTIRGQGYRFDAN 223


>gi|167578439|ref|ZP_02371313.1| DNA-binding response regulator TctD [Burkholderia thailandensis
           TXDOH]
 gi|167616577|ref|ZP_02385208.1| DNA-binding response regulator TctD [Burkholderia thailandensis
           Bt4]
 gi|257143082|ref|ZP_05591344.1| DNA-binding response regulator TctD [Burkholderia thailandensis
           E264]
          Length = 223

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LEVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   + R E GP+   S  R   +  +   L  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHDHVRVECGPLEFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL    G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVHRLRKKLEGS-GVAIV-TLRGLGYLLE 219


>gi|152988150|ref|YP_001350819.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7]
 gi|150963308|gb|ABR85333.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7]
          Length = 221

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 13/166 (7%)

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +R   Q+ P++ ++    +   +   DSG DD + KP    E+ ARV A+ RR 
Sbjct: 60  LDILRNLRHQGQLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRR- 118

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +  RA      G +R+        + G+   L  RE  +L  L+ N GK +++ Q+  
Sbjct: 119 --TTGRALPQLVHGALRLDPATHQVTLAGQAVELAPREYALLRLLLENSGKVLSRNQLEQ 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++YG +   VE N +E H+  LR+KL N+L    + + R +GY ID
Sbjct: 177 SLYG-WSGDVESNAIEVHVHHLRRKLGNQL----IRTVRGIGYGID 217


>gi|329120052|ref|ZP_08248722.1| two component response regulator [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327463583|gb|EGF09901.1| two component response regulator [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 220

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 12/153 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-- 129
            +P++ ++   +L   L   + G DD + KP    E+ AR+  + RR +    RA++G  
Sbjct: 72  NLPVLILTARDALPDRLAGLNGGADDYLCKPFALEELAARLNVLVRRHR---GRADSGLK 128

Query: 130 --PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              + + +  +   + GE   L  RE R+LE L++N    V++ QI   +YG +D+ V+ 
Sbjct: 129 FGRLTLDTAAQTASLGGEPLDLTAREWRLLEMLVSNPKHIVSRAQIEDKLYG-WDQEVDS 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N VE HI  LRK    K+G   + +KR LGY +
Sbjct: 188 NAVEVHIHHLRK----KIGASVIKTKRGLGYQL 216


>gi|319403885|emb|CBI77471.1| two-component system regulatory protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 222

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 8/131 (6%)

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           D+G DD V KP H  E++AR+ A+ RR    + N    G + + +      + G++  L 
Sbjct: 92  DAGADDYVVKPFHLEEVMARLRALIRRSTGHATNTLSCGEVLLDTKTSRVFIDGQLIKLT 151

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209
             E R+L YLM +  K V+KT++   +Y   FD+  + N +E  + +LRK    KLG D 
Sbjct: 152 SYEFRLLSYLMHHSDKVVSKTELIEHLYDQDFDK--DSNTIEVFVRRLRK----KLGVDS 205

Query: 210 VDSKRFLGYSI 220
           +++ R LGY I
Sbjct: 206 IETVRGLGYRI 216


>gi|291302794|ref|YP_003514072.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572014|gb|ADD44979.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 230

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 14/149 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R++R+ SQVP++ ++      T L     G DD + KP   RE+ ARV A+ RR  
Sbjct: 65  MDVCRVLRSDSQVPILVLTARDDEDTLLQGLQLGADDYMTKPFSPRELAARVRALLRR-- 122

Query: 121 VSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              +R E+GP  VF  GR           V GE   +  RE  +L  L A  G+  ++  
Sbjct: 123 ---SRPESGPPTVFQVGRLTVDTGRVRVSVDGEPVSVTAREFAVLAALAAEPGRVFSRLD 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I    +G FD  V    V++HI+ LR+K+
Sbjct: 180 IVHRAFG-FDSHVSPRTVDAHIANLRRKI 207


>gi|92118832|ref|YP_578561.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801726|gb|ABE64101.1| cell cycle transcriptional regulator CtrA [Nitrobacter hamburgensis
           X14]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K  + +  +TG 
Sbjct: 72  KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKLRN 203
           +  I KLRKKL N
Sbjct: 191 DVFICKLRKKLAN 203


>gi|39934702|ref|NP_946978.1| two-component cell cycle transcriptional regulatorCtrA
           [Rhodopseudomonas palustris CGA009]
 gi|192290218|ref|YP_001990823.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|316935200|ref|YP_004110182.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|39648552|emb|CAE27073.1| two-component cell cycle transcriptional regulator ctrA, winged
           helix family [Rhodopseudomonas palustris CGA009]
 gi|192283967|gb|ACF00348.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|315602914|gb|ADU45449.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K  + +  +TG 
Sbjct: 72  KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKLRN 203
           +  I KLRKKL N
Sbjct: 191 DVFICKLRKKLAN 203


>gi|209886225|ref|YP_002290082.1| cell cycle transcriptional regulator CtrA [Oligotropha
           carboxidovorans OM5]
 gi|209874421|gb|ACI94217.1| cell cycle transcriptional regulator CtrA [Oligotropha
           carboxidovorans OM5]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL+  R+ +   + P++ +S    ++  +     G DD + KP H  E++AR+ AI 
Sbjct: 59  GYEVLKQLRVSKI--KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +  +TG + V  D +  EV G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVIQTGDLIVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            +YG  DE  E  +++  I KLRKKL N
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAN 203


>gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 226

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 17/207 (8%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +      +E L+   R     +   L+  G    ++ + +R  S VP+I ++   S
Sbjct: 24  EGFTAAVATTGQEALEEFDRNGADIVLLDLMLPGMSGTDVCKQLRQRSAVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR----AETGPIRVFSDGRD 139
               +   + G DD V KP   RE++ARV A+ RR   + +      E GP+R+  +   
Sbjct: 84  EIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEAEDMLPQVLEAGPVRMDVERHV 143

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             V GE   LP +E  +LEYL+ N G+ + + Q+   ++G  D   +   ++ H+    K
Sbjct: 144 VTVSGEEVSLPLKEFDLLEYLLRNVGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV----K 198

Query: 200 KLRNKLGFDPVDSK-----RFLGYSID 221
           +LR+KL  DP + +     R LGY  +
Sbjct: 199 RLRSKLEPDPAEPRYLVTVRGLGYKFE 225


>gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
 gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
          Length = 251

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+  A  + P+I +S   S +  +     G DD V KP    EILARVAAI RR K+ + 
Sbjct: 92  RLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKIDDV 151

Query: 125 RAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            A    G + +  +  +  ++G +  L   E ++L Y M N  + ++K+QI   ++  +D
Sbjct: 152 DATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD-YD 210

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              + ++VES+IS +R+KL        + +KR  GY
Sbjct: 211 FDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGY 246


>gi|188527213|ref|YP_001909900.1| putative transcriptional regulator [Helicobacter pylori Shi470]
 gi|188143453|gb|ACD47870.1| putative transcriptional regulator [Helicobacter pylori Shi470]
 gi|308063265|gb|ADO05152.1| putative transcriptional regulator [Helicobacter pylori Sat464]
          Length = 223

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 32/231 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55
           M VL+ ++  V  G I    + G++ +GF      SLE  E+L      D+   +  ++ 
Sbjct: 1   MRVLLIEKNSVLGGEI----EKGLNAKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +  + RI   HS + ++  SD P+ +  +  F+ G DD + KP  +R I A VA I
Sbjct: 52  DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109

Query: 116 YRRLKV-SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             RL+   +N  E G +       ++   GR+ EV+G+ F        +L +L  +R + 
Sbjct: 110 EARLRFWGSNVIEIGDLIISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+K Q+  AI+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212


>gi|149203784|ref|ZP_01880753.1| two-component response regulator [Roseovarius sp. TM1035]
 gi|149142901|gb|EDM30943.1| two-component response regulator [Roseovarius sp. TM1035]
          Length = 223

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + +R A +  P++ ++   S+   +   ++G DD + KP    E+ ARVAA+ RR 
Sbjct: 60  LTLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRP 119

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GP+ +    R    +G+   L  RE  ILE+LM  +G+   +T +  AI
Sbjct: 120 HALEQETVLRAGPLEMDLIARKVTREGQEIDLLPREFAILEHLMRRKGRVQTRTMLLEAI 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + FD     NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 180 WDISFDPMT--NVVETHISRLRAKVDKPFTTELIKTVRGAGYRID 222


>gi|134279196|ref|ZP_01765909.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 305]
 gi|134249615|gb|EBA49696.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 305]
          Length = 252

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 89  LDVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 148

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   + R E GP+   S  R   +  +   L  RER +LE L+   G+ + K  +   I+
Sbjct: 149 LGHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 208

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           GL DE+V  + VE ++ +LRKKL
Sbjct: 209 GL-DESVNADAVEIYVHRLRKKL 230


>gi|42520575|ref|NP_966490.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410314|gb|AAS14424.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 256

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 1/140 (0%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  +VP++ +S   ++         G DD + KP H  E+LAR+ AI RR K  
Sbjct: 67  LLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIVRRTKGH 126

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  + G I +  D R  EV+G+   L  +E  ++E L   +G  + K    + +Y   
Sbjct: 127 PESVIKIGNININFDHRVVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLNHLYNGL 186

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE  +  +V+  + KLRKKL
Sbjct: 187 DEPSDNKIVDVFMCKLRKKL 206


>gi|319408928|emb|CBI82585.1| cell cycle transcriptional regulator CtrA [Bartonella
           schoenbuchensis R1]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 15/188 (7%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           YI   G++GV L      +++  L      D+S  +        + L L +I     + P
Sbjct: 28  YITDLGEEGVDLGKL--YDYDIILLDLNLPDMSGYDVL------RTLRLAKI-----KTP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133
           ++ +S   S++  +  F  G DD + KP H  E++AR+ A+ RR K  + +   TG + V
Sbjct: 75  VLILSGMSSIEDKVRGFGFGADDYMTKPFHKEELIARIHAVVRRSKGHAQSVIVTGDLTV 134

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D +  E+ G    L  +E ++LE L   +G  + K    + +YG  DE  E  +++  
Sbjct: 135 NLDNKTVEIAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKIIDVF 193

Query: 194 ISKLRKKL 201
           I KLRKKL
Sbjct: 194 ICKLRKKL 201


>gi|331005798|ref|ZP_08329157.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC1989]
 gi|330420435|gb|EGG94742.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC1989]
          Length = 251

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 5/166 (3%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL + +R H +  P++ ++   S Q  +   ++G DD + KP H+ E+LAR+ A+ RR 
Sbjct: 60  IELIKQLRQHKKDFPVLILTARDSWQDKVIGLEAGADDYLAKPFHNEELLARLNALTRRS 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K +++     G I + +  +   +  +   L + E   LEYL  N+ + ++KT++   +Y
Sbjct: 120 KGLASPEIHIGEILINTAKKLVSINNQDITLTQYEYNTLEYLALNKARVISKTELTEHLY 179

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              FD  ++ NV+E  I +LRKKL       P+ + R  GY +  N
Sbjct: 180 DQDFD--LDSNVIEVLIGRLRKKLDPNNIHKPIVTHRGQGYRLTEN 223


>gi|325661991|ref|ZP_08150610.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471654|gb|EGC74873.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 224

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 92/171 (53%), Gaps = 2/171 (1%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            ++ K + +  L  I +  S++P++ ++    +   ++  D+G +D + KP H +E+LAR
Sbjct: 52  IMMPKKDGLTVLKEIRKKGSKIPVLLLTAKGEVDDKVEGLDAGANDYLTKPFHAKELLAR 111

Query: 112 VAAIYR-RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ R +++  +++ + G + +     +         L  +E +++E+LM+N G  ++ 
Sbjct: 112 LRAMTRVQMESEDSQLKAGNVTLDRATFELTTPKGSIRLANKEYQMMEFLMSNPGHLISS 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + F  I+G +D   E NVV  ++S LRKKL +      + + R  GYS++
Sbjct: 172 ERFFEKIWG-YDSEAELNVVWVYLSNLRKKLSSLDADIQIRATRNAGYSLE 221


>gi|304393592|ref|ZP_07375520.1| two component transcriptional regulator [Ahrensia sp. R2A130]
 gi|303294599|gb|EFL88971.1| two component transcriptional regulator [Ahrensia sp. R2A130]
          Length = 216

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 12/167 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  R    +P++ ++        +   D+G DD V KP H  E+LAR+ A+ 
Sbjct: 59  GISVLEKWR--RGGRSMPVLLLTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARLRALI 116

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR    ++ AE    +V  D R   V   G    L   E R+L YLM ++G+ V++T++ 
Sbjct: 117 RR-AAGHSSAEIEIGKVLLDTRQSRVFMDGTPVKLTSHEFRLLSYLMHHKGEIVSRTELI 175

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y   FD+  + N +E  + +LRKKL +    D +++ R LGY +
Sbjct: 176 EHLYDQDFDK--DSNTIEVFVGRLRKKLHS----DVIETVRGLGYRV 216


>gi|239637826|ref|ZP_04678788.1| response regulator protein [Staphylococcus warneri L37603]
 gi|239596584|gb|EEQ79119.1| response regulator protein [Staphylococcus warneri L37603]
          Length = 221

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I IS        +     G DD + KP +    +A+V A+ RR   L VSN
Sbjct: 66  IRKISNVPIIFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTVAKVQALLRRTYDLAVSN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N       ++ +D      QGE+  L   E +I++ L  N GK V +T +    +   + 
Sbjct: 126 NELNVKGCQLIADEAKLMFQGELTQLSLTELQIIKLLFQNEGKFVNRTALIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +++N +  ++++LRKKL N++G  D +++K+ +GY +
Sbjct: 185 YIDDNTLAVNMTRLRKKL-NQIGLTDFIETKKNVGYRV 221


>gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268]
 gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268]
          Length = 224

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           + IR HS+VP+I ++        L  FD G D+ ++KP   + ++ARV A+ RR  V   
Sbjct: 68  KTIREHSKVPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALLRRSGVQKE 127

Query: 125 R-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E G I +        V G+   L  +E  +L+Y + N+G  +++ +I + ++  +D 
Sbjct: 128 ELLEVGGIVIDEAAHSVTVDGKPIELSFKEYELLQYFVENKGIALSREKILNNVWN-YDY 186

Query: 184 AVEENVVESHISKLRKKLRNK 204
             +   +++H+ KLR KL +K
Sbjct: 187 FGDARTIDTHVKKLRAKLMDK 207


>gi|294085303|ref|YP_003552063.1| response regulator protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664878|gb|ADE39979.1| response regulator protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 221

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R +   P++ ++   + Q  +   D+G DD + KP    E+ ARV A+ RR + +N   +
Sbjct: 68  RDNVTTPVLILTARDTTQERIIGLDTGADDYLVKPFEMDELDARVRALLRRQRNNNQHEQ 127

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G +     G     +G+   LPRRE  I E L    G+ V+K  +   +YG+  + V E
Sbjct: 128 IGKLVFDRRGHSVSFEGKDLGLPRREISIFECLFDRSGRFVSKANLLDYVYGIGAD-VNE 186

Query: 188 NVVESHISKLRKKL 201
           +V+E ++S+LRK+L
Sbjct: 187 SVIEVYVSRLRKRL 200


>gi|49187888|ref|YP_031141.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49181815|gb|AAT57191.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
          Length = 221

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR    
Sbjct: 63  ICKIMRGQSDVPIIMLTGSHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 122

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++
Sbjct: 123 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +  V+++HI  LRK    KLG   + + + +GY I+
Sbjct: 183 G-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 220


>gi|306823610|ref|ZP_07456985.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309802985|ref|ZP_07697086.1| sensory transduction protein RegX3 [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553317|gb|EFM41229.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308220452|gb|EFO76763.1| sensory transduction protein RegX3 [Bifidobacterium dentium
           JCVIHMP022]
          Length = 234

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LARV A+ RR ++ 
Sbjct: 63  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARVRAVLRRNQMV 122

Query: 122 --SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             S++ ++       G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 123 AESDSASDDDIPLVCGDISMKIGQHEVSVRGENVFFPLKEFELLEYLMQNKGRVMTRHQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP   K     R LGY ID
Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|228899749|ref|ZP_04063996.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228859863|gb|EEN04276.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 214

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 21/170 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 56  FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 113

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKT 171
            SNN++ T    VF   R+  V G+ +         PL  +E  IL+ L+ N  K + + 
Sbjct: 114 -SNNQS-TDNHFVF---RELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLRNEKKVLTRD 168

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I   I+G ++ A +  ++++H+  +RK    KL    + + + +GY ID
Sbjct: 169 NIVEKIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 213


>gi|90425706|ref|YP_534076.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90107720|gb|ABD89757.1| two component transcriptional regulator, winged helix family / cell
           cycle transcriptional regulator CtrA [Rhodopseudomonas
           palustris BisB18]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K  + +  +TG 
Sbjct: 72  KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKLRN 203
           +  I KLRKKL N
Sbjct: 191 DVFICKLRKKLAN 203


>gi|75761320|ref|ZP_00741297.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491192|gb|EAO54431.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 228

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 21/170 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 70  FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKT 171
            SNN++ T    VF   R+  V G+ +         PL  +E  IL+ L+ N  K + + 
Sbjct: 128 -SNNQS-TDNHFVF---RELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLRNEKKVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I   I+G ++ A +  ++++H+  +RK    KL    + + + +GY ID
Sbjct: 183 NIVEKIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 227


>gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 226

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 14/174 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+   E+ R +R  S VP+I ++   +    +   + G DD V KP   RE++ARV A+ 
Sbjct: 57  GQSGTEVCRQLRQRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116

Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR     ++  N  + GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q
Sbjct: 117 RRQGEPEELITNTVQAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNSGRVLTRGQ 176

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
           +   ++G  D   +   ++ H+    K+LR+K+  DP   +     R LGY  +
Sbjct: 177 LIDRVWG-SDYVGDTKTLDVHV----KRLRSKIEPDPSAPRYLVTVRGLGYKFE 225


>gi|320532510|ref|ZP_08033327.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135272|gb|EFW27403.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 243

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 28/220 (12%)

Query: 23  GVSLEGFNSLEFE------EWLQSSARED-VSAIEAFLIGKGEKVLELPRI--------I 67
           G+  +GF  +E E      E  ++S R   V  I+  L+      L LPR+        I
Sbjct: 26  GLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLD-----LMLPRLDGTEVCTRI 80

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S VP+I ++   +    +   + G DD V KP  +RE+LAR+ A+ RR + +    E
Sbjct: 81  RRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKAVLRRSRDTGPELE 140

Query: 128 ----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                GP+R+  +  +  V GEV  +P RE  +LE  + N G+ + ++QI   ++G  + 
Sbjct: 141 PVLVAGPVRMDVERHEVRVDGEVVAIPLREFELLELFLRNPGRVLTRSQIIERLWG-PEY 199

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSID 221
             +   ++ H+ +LR ++       PV   + R LGY +D
Sbjct: 200 GGDTKTLDVHVKRLRGRIEAD-ASKPVLITTVRGLGYRLD 238


>gi|268611303|ref|ZP_06145030.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 228

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ R +R  S VP+I  S   +    +  FD G DD + KP   +E+L+RV A+ RR  
Sbjct: 63  FEICRQLRKVSDVPVIFASARTAEDDRIRSFDIGGDDYLPKPYSMKELLSRVNALIRRAY 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  + +   G I + +  R     GE   L +RE  +L YL  NR   + K ++ S ++
Sbjct: 123 GQTEDKQLSFGGIVINTATRTVTRNGEKVMLAQREFDLLVYLCRNRNTAIPKEKLLSEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
           G F E VE + +  HI  LR+KL +    DP   K       LGY ++
Sbjct: 183 GAFSE-VEPSTLTVHIRWLREKLED----DPASPKYIKTVWRLGYMLE 225


>gi|166032244|ref|ZP_02235073.1| hypothetical protein DORFOR_01947 [Dorea formicigenerans ATCC
           27755]
 gi|226325641|ref|ZP_03801159.1| hypothetical protein COPCOM_03454 [Coprococcus comes ATCC 27758]
 gi|166027967|gb|EDR46724.1| hypothetical protein DORFOR_01947 [Dorea formicigenerans ATCC
           27755]
 gi|225205765|gb|EEG88119.1| hypothetical protein COPCOM_03454 [Coprococcus comes ATCC 27758]
          Length = 224

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 5/159 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L+  R++RA     LI ++        ++ +D+G DD + KP     ++++V A+ RRL 
Sbjct: 61  LDFGRMVRAGGDTYLIYLTALDQEIDIVNGYDTGADDYITKPFSLMALVSKVNALMRRLS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           KV      +G I V           E   L ++E  +L YL  N G+ V+K  I   ++ 
Sbjct: 121 KVQAQIMSSGEITVHMKTMQVYKGDEPVTLSKKEFSLLLYLWENAGQIVSKESILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  + V++N V  +IS    +L+NKLG + + + R LGY
Sbjct: 181 IDGQFVDDNTVTVNIS----RLKNKLGTEEIANVRGLGY 215


>gi|152998159|ref|YP_001342994.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839083|gb|ABR73059.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 223

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 80/148 (54%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++L+  R  + HS  P+I ++    ++  ++  D G DD + KP+   E+ AR  A+ 
Sbjct: 59  GNQILQTLR--KKHSNTPVIVLTARDGIKDRIELLDLGADDYMTKPVDFGELEARCRALL 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR +  + N  E G + +        V G +  L +RE R+LE  +++ G+ ++K  +  
Sbjct: 117 RRSQGQAQNTIEYGNVSLNLQACSVTVDGNLIDLKQREFRLLEVFISHTGRVLSKEALIE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            IY  F+E    +V+E ++++LRK L++
Sbjct: 177 HIYN-FNENPNSSVIEIYVARLRKSLQD 203


>gi|85713634|ref|ZP_01044624.1| Transcriptional regulatory protein [Nitrobacter sp. Nb-311A]
 gi|85699538|gb|EAQ37405.1| Transcriptional regulatory protein [Nitrobacter sp. Nb-311A]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K  + +  +TG 
Sbjct: 72  KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKLRN 203
           +  I KLRKKL N
Sbjct: 191 DVFICKLRKKLAN 203


>gi|186685384|ref|YP_001868580.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467836|gb|ACC83637.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 227

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 17/171 (9%)

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  L + +++R   +  P+I ++    L   L   + G DD + KP    E+ AR+ A+
Sbjct: 56  GKDGLSILKLLRGQGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELAARIHAV 115

Query: 116 YRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR  VSN  N    GPIR+    R+     +   L  RE  +LEYLM + G+   +TQI
Sbjct: 116 VRR-SVSNRQNILSVGPIRLDRITREVTCDRQAIELTSREFNLLEYLMRSPGRVFTRTQI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD------SKRFLGY 218
              ++G +D     NVV+  I ++RKK+      DP+D      S R +GY
Sbjct: 175 LEHVWG-YDFNPNTNVVDVCIQRIRKKI------DPIDEPVWIESIRGVGY 218


>gi|222149588|ref|YP_002550545.1| two component response regulator [Agrobacterium vitis S4]
 gi|221736570|gb|ACM37533.1| two component response regulator [Agrobacterium vitis S4]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 9/150 (6%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR  
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRR-- 118

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S   A+    TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + 
Sbjct: 119 -SKGHAQSIIITGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNH 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +YG  DE  E  +++  I KLRKKL N  G
Sbjct: 178 LYGGMDEP-ELKIIDVFICKLRKKLANAAG 206


>gi|27377311|ref|NP_768840.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27350454|dbj|BAC47465.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K  + +  +TG 
Sbjct: 72  KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKLRN 203
           +  I KLRKKL N
Sbjct: 191 DVFICKLRKKLAN 203


>gi|58696682|ref|ZP_00372233.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225630493|ref|YP_002727284.1| two component transcriptional regulator [Wolbachia sp. wRi]
 gi|58537144|gb|EAL60252.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225592474|gb|ACN95493.1| two component transcriptional regulator [Wolbachia sp. wRi]
          Length = 256

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 1/140 (0%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  +VP++ +S   ++         G DD + KP H  E+LAR+ AI RR K  
Sbjct: 67  LLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIVRRTKGH 126

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  + G I +  D R  EV+G+   L  +E  ++E L   +G  + K    + +Y   
Sbjct: 127 PESVIKIGNININFDHRIVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLNHLYNGL 186

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE  +  +V+  + KLRKKL
Sbjct: 187 DEPSDNKIVDVFMCKLRKKL 206


>gi|329849938|ref|ZP_08264784.1| cell cycle transcriptional regulator ctrA [Asticcacaulis
           biprosthecum C19]
 gi|328841849|gb|EGF91419.1| cell cycle transcriptional regulator ctrA [Asticcacaulis
           biprosthecum C19]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 3/143 (2%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R      P++ +S    + T +     G DD + KP H  E++AR+ A+ RR 
Sbjct: 60  LEVLRQLRVGKVNTPVMILSGTSEIDTKVKTLGGGADDYMTKPFHKDELIARIHAVVRRS 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K  + +   TG I V  D +  EV G    L  +E  +LE L   +G  + K    + +Y
Sbjct: 120 KGHAQSIIRTGDIVVNLDAKTVEVSGNRVHLTGKEYEMLELLSLRKGTTLTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G  DE  E  +++  I KLRKKL
Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKL 201


>gi|300854728|ref|YP_003779712.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434843|gb|ADK14610.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 228

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+++L+  R  +     P++ ++   SL+  ++ F  G DD ++KP H  E+  R+ A+ 
Sbjct: 58  GDEILKSLR--KNGVSTPILLLTAKDSLEDKINGFKIGADDYISKPFHIEELKVRIEALL 115

Query: 117 RR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR    ++ N  + G +++    R+  +  E   L  +   ++EYL+ N+G  + K QIF
Sbjct: 116 RRSGALINENILKCGNLKIDIKIRELSINNEKVNLQAKLFDLMEYLINNKGTILTKEQIF 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++G F+     N+VE ++ KLRK L        + + R +GY
Sbjct: 176 DRVWG-FESDTAINIVEVYMHKLRKTLVEHGCDGEIKTVRGIGY 218


>gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 226

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 8/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRALRQRSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRGE 121

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + R     E GP+R+  +     V G   PLP +E  +LE  + N G+ + + Q+   +
Sbjct: 122 IDERVTATLEAGPVRMDVERHVVTVAGASVPLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  + G +P  + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEGEPG-NPRHLVTVRGLGYKFE 225


>gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 229

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 14/195 (7%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           E L+   RE    +   L+  G    E+ R +R  S+VP+I ++   S    +   + G 
Sbjct: 36  EALEVFDREGADLVLLDLMLPGLPGTEVCRSLRQRSKVPVIMLTAKDSEIDKIVGLELGA 95

Query: 96  DDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151
           DD V KP   RE++AR+ A+ RR     + S++    GP+R+  D     V+GE   LP 
Sbjct: 96  DDYVTKPFSSRELVARIRAVLRRRGDAEEPSSSVLAAGPVRMDVDRHVVTVRGEKVQLPL 155

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           +E  +LE L+ N G+ + + Q+   ++G  D   +   ++ HI    K+LR K+  DP  
Sbjct: 156 KEFELLEVLLRNAGRVLTRGQLIDRVWG-ADYVGDTKTLDVHI----KRLRAKIEPDPSK 210

Query: 212 SK-----RFLGYSID 221
            +     R LGY  +
Sbjct: 211 PRYILTVRGLGYKFE 225


>gi|257898553|ref|ZP_05678206.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257836465|gb|EEV61539.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 224

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 5/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++ +   Q P++ ++   SL+  ++ F+ G DD + KP +  E++ RV A+ +R    
Sbjct: 63  LAKLRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGL 122

Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        +  D +  EV  + +V P+  +E  +L Y + N+G  + K QIF  I+G 
Sbjct: 123 FDENILKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           FD      VVE ++S LRK LR+  G D  + + R +GY
Sbjct: 182 FDSDTTITVVEVYMSNLRKHLRST-GLDKEIKTLRNVGY 219


>gi|75674723|ref|YP_317144.1| transcriptional regulatory protein [Nitrobacter winogradskyi
           Nb-255]
 gi|74419593|gb|ABA03792.1| cell cycle transcriptional regulator CtrA [Nitrobacter winogradskyi
           Nb-255]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K  + +  +TG 
Sbjct: 72  KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKLRN 203
           +  I KLRKKL N
Sbjct: 191 DVFICKLRKKLAN 203


>gi|148257763|ref|YP_001242348.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp.
           BTAi1]
 gi|146409936|gb|ABQ38442.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp.
           BTAi1]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K  + +  +TG 
Sbjct: 72  KTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSKGHAQSVIQTGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKLRN 203
           +  I KLRKKL N
Sbjct: 191 DVFICKLRKKLAN 203


>gi|322834357|ref|YP_004214384.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321169558|gb|ADW75257.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 228

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58
            +LI+D  ++ DG  A     G++  GF    F + L   A  D +  +A ++     G 
Sbjct: 3   ILLIEDDKMIGDGIKA-----GLAKLGFTLDWFTDGLTGKAALDSAPYDAVILDLSLPGM 57

Query: 59  KVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IY 116
             ++L R  R A    P++ ++   +L+  +    +G DD + KP    E+ AR+ A I 
Sbjct: 58  DGMQLLREWRKAGRDTPVLILTARDALEQRVGGLQAGADDYLCKPFALVEVAARLQALIR 117

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR  V   +   G +      R   + GE   L  RE  +LE  + N+G+ +A+T I   
Sbjct: 118 RRHGVITPKVTHGAVEFDPAARSVTLNGEAVTLTPREVTVLELFLRNKGRVLARTLIQEK 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           +Y   DE V  N VE HI  LR KL
Sbjct: 178 LYSWEDE-VSSNAVEVHIHHLRSKL 201


>gi|226949267|ref|YP_002804358.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844404|gb|ACO87070.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 221

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 19/199 (9%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85
           +L   A + + A+E F  G  + ++    LP+I        IR  S VP+I ++     +
Sbjct: 27  YLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFVVCEIIRKESSVPIIMLTALGEEE 86

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142
             +  F+  VDD + KP     ++ RV A+ RR   L+ +N+      I ++       V
Sbjct: 87  DEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNSTLTFEEITIYPSNYKTLV 146

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             +   L  +E +ILE LM+N G+  ++  + + I+G +D   +  V+++HI    K LR
Sbjct: 147 NNKEIELTYKEFQILEILMSNVGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201

Query: 203 NKLGFDPVDSKRFLGYSID 221
            KL  D + + R +GY I+
Sbjct: 202 QKLNIDYIKTIRGVGYKIE 220


>gi|83944020|ref|ZP_00956477.1| response regulator protein [Sulfitobacter sp. EE-36]
 gi|83845267|gb|EAP83147.1| response regulator protein [Sulfitobacter sp. EE-36]
          Length = 223

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 6/163 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R     P+I ++        +   D+G DD + KP    E+ AR+ A+ RR  + 
Sbjct: 63  LSRLRRRGDGTPVILLTARAETSERVAGLDAGADDYLTKPFEMDELEARLRAMARRKNLE 122

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R   GP+ VF       ++GE     PR+E   LE L+  RG+ V+K+Q+ + +YG 
Sbjct: 123 FAARDAIGPL-VFDRTNRQLLEGEQPLAFPRKELATLECLLERRGRIVSKSQLITHVYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              A E++ +E H+S+LRK+L    G   + + R LGY ++ +
Sbjct: 181 TGAAQEDSAIEPHVSRLRKRL-EPFGIR-IKAARGLGYMLEVD 221


>gi|115526264|ref|YP_783175.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520211|gb|ABJ08195.1| cell cycle transcriptional regulator CtrA / two component
           transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K  + +  +TG 
Sbjct: 72  KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKLRN 203
           +  I KLRKKL N
Sbjct: 191 DVFICKLRKKLAN 203


>gi|293570434|ref|ZP_06681489.1| transcriptional regulatory protein CiaR [Enterococcus faecium E980]
 gi|291609380|gb|EFF38647.1| transcriptional regulatory protein CiaR [Enterococcus faecium E980]
          Length = 224

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 5/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++ +   Q P++ ++   SL+  ++ F+ G DD + KP +  E++ RV A+ +R    
Sbjct: 63  LAKLRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGL 122

Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        +  D +  EV  + +V P+  +E  +L Y + N+G  + K QIF  I+G 
Sbjct: 123 FDENILKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           FD      VVE ++S LRK LR+  G D  + + R +GY
Sbjct: 182 FDSDTTITVVEVYMSNLRKHLRST-GLDKEIKTLRNVGY 219


>gi|146338575|ref|YP_001203623.1| two-component cell cycle transcriptional regulator ctrA
           [Bradyrhizobium sp. ORS278]
 gi|146191381|emb|CAL75386.1| Two-component cell cycle transcriptional regulator ctrA
           [Bradyrhizobium sp. ORS278]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K  + +  +TG 
Sbjct: 72  KTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSKGHAQSVIQTGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKLRN 203
           +  I KLRKKL N
Sbjct: 191 DVFICKLRKKLAN 203


>gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium
           glutamicum ATCC 13032]
 gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 232

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 14/191 (7%)

Query: 27  EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF+++   +    L   +R ++  +   L+  G    ++ + +R+ S VP+I ++   S
Sbjct: 24  EGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTDVCKELRSVSTVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP----------IRV 133
               +   + G DD V KP   RE++AR+ A+ RR  V+   AE  P          +R+
Sbjct: 84  EIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGVTETEAEELPLDDQILEGGRVRM 143

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D     V GE   +P +E  +LEYL+ N G+ + + Q+   I+G  D   +   ++ H
Sbjct: 144 DVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRGQLIDRIWG-ADYVGDTKTLDVH 202

Query: 194 ISKLRKKLRNK 204
           + +LR K+  +
Sbjct: 203 VKRLRSKIEEE 213


>gi|153852896|ref|ZP_01994333.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814]
 gi|149754538|gb|EDM64469.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814]
          Length = 224

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 13/203 (6%)

Query: 28  GFNSLEFEE---WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ---VPLIGISDY 81
           GF +  FE+   +L++ A E    +   ++  GE  +EL R ++A  +   +P+I ++  
Sbjct: 23  GFQARGFEDGSSFLEALALETPELVLLDIMLPGEDGMELLRKLKASKKTKDIPVIMVTAK 82

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRAETGPIRVFSDG 137
            +    +   D+G DD V KP    E+++R+ A+ RR       S +  E G IR+    
Sbjct: 83  GAEYDKVKGLDAGADDYVTKPFGMMELISRIKAVLRRSAKGSVSSEDTFEIGEIRLDPKK 142

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
            +  V GEV  L  +E  +L+ LM N    + + Q+   I+G +D   E   V+ H+  L
Sbjct: 143 HEVTVHGEVVNLTLKEYELLKRLMKNSNIVLTRDQLLEDIWG-YDFDGETRTVDVHVRTL 201

Query: 198 RKKLRNKLGFDPVDSKRFLGYSI 220
           R+KL +    + +++ R +GY +
Sbjct: 202 RQKLGD--AGEQIETVRGVGYRM 222


>gi|255327015|ref|ZP_05368091.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255296232|gb|EET75573.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 233

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 106/212 (50%), Gaps = 15/212 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L ++G+ A+F ++G       S  FE +++S+   D+  ++  L   G   +E+ + IR 
Sbjct: 26  LAQEGFNAVFCENG-------SRAFETFMRSTP--DLVLLDLML--PGMNGIEVCQQIRR 74

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
            S VP+I ++     +  +   ++G DD + KP  H E+LAR+    R  +        G
Sbjct: 75  SSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRPRESRQLVVSIG 134

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +  DGR  +      P+   E  +L  L+ + G+ +++ ++   ++G  D  V +++
Sbjct: 135 DIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVWGYTD--VSDSL 192

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           V  H+ +LR K  ++LG D  + + R +GY I
Sbjct: 193 VNVHVQRLRAKF-DELGADRFIQTVRGVGYKI 223


>gi|330504167|ref|YP_004381036.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328918453|gb|AEB59284.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 225

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++    A   ++G  ++   + E   +   S   D++ ++  L G     +
Sbjct: 3   LLVVEDEALLRHHLFARLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGLPGMSG--I 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R+  +  P++ ++   + Q  ++    G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRSQDKSFPILILTARGNWQDKVEGLSCGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  E G + +    +   V  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTKSTIEAGSLVLDLHRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVAKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             D+  + NV+E  + +LR+KL   LG   +++ R  GY
Sbjct: 181 -GDDDRDPNVIEVLVGRLRRKLEAVLGGKSIETVRGQGY 218


>gi|222153107|ref|YP_002562284.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113920|emb|CAR42131.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 224

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 2/134 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K +NN    G I+V +D     V  E   L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNNNLIRYGNIQVDTDRNMVTVNQENIEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + K+QIF  I+G FD     +VVE +ISK+RKKL++      
Sbjct: 151 LGKEYELLIYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVEVYISKIRKKLKSTDFATN 209

Query: 210 VDSKRFLGYSIDWN 223
           + + R +GY +  N
Sbjct: 210 LQTLRSVGYILKSN 223


>gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
 gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
          Length = 256

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 18/198 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY     +DG+   G   L          +  +  ++  L   G    EL R+IR 
Sbjct: 49  LAKEGYTLECAEDGLKALGTYRL---------FKPSLVILDVML--PGIDGFELCRLIRT 97

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128
            S VP++ ++   S    ++  ++G DD ++KP   RE+LAR+ A+ RR +  N++ ET 
Sbjct: 98  ESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQTQNSQTETT 157

Query: 129 -----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G + +F +       G       +E  +  +++ NR +  ++ Q+   ++G +D 
Sbjct: 158 GGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLEKVWG-YDY 216

Query: 184 AVEENVVESHISKLRKKL 201
                 V+ HIS LR+K+
Sbjct: 217 PGWTRTVDVHISWLRQKI 234


>gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum]
          Length = 232

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 14/191 (7%)

Query: 27  EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF+++   +    L   +R ++  +   L+  G    ++ + +R+ S VP+I ++   S
Sbjct: 24  EGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTDVCKELRSVSTVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP----------IRV 133
               +   + G DD V KP   RE++AR+ A+ RR  V+   AE  P          +R+
Sbjct: 84  EIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGVTETEAEELPLDDEILEGGRVRM 143

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D     V GE   +P +E  +LEYL+ N G+ + + Q+   I+G  D   +   ++ H
Sbjct: 144 DVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRGQLIDRIWG-ADYVGDTKTLDVH 202

Query: 194 ISKLRKKLRNK 204
           + +LR K+  +
Sbjct: 203 VKRLRSKIEEE 213


>gi|257887434|ref|ZP_05667087.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257823488|gb|EEV50420.1| transcriptional regulator [Enterococcus faecium 1,141,733]
          Length = 224

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 5/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++ +   Q P++ ++   SL+  ++ F+ G DD + KP +  E++ RV A+ +R    
Sbjct: 63  LAKLRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGL 122

Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        +  D +  EV  + +V P+  +E  +L Y + N+G  + K QIF  I+G 
Sbjct: 123 FDENILKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           FD      VVE ++S LRK LR+  G D  + + R +GY
Sbjct: 182 FDSDTTITVVEVYMSNLRKHLRST-GLDKEIKTLRNVGY 219


>gi|68537004|ref|YP_251709.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|260579348|ref|ZP_05847230.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|68264603|emb|CAI38091.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|258602477|gb|EEW15772.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 230

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 10/204 (4%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86
           E F + +    L + A ED+  I   L+  G    E+ R +R  S VP+I ++   S   
Sbjct: 27  EVFMAPDGPTALDTFAAEDIDIILLDLMLPGMSGTEVCRQLRQTSSVPVIMVTARDSEID 86

Query: 87  TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---DPE-- 141
            +   + G DD V KP   RE++AR+ A+ RR       A      V  + R   D E  
Sbjct: 87  KVVGLELGADDYVTKPYFARELIARIRAVLRRGGEVEVEAPDDDGLVLQEDRVMMDVERH 146

Query: 142 ---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G+  P+P +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ HI +LR
Sbjct: 147 IVTVDGQKVPMPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHIKRLR 205

Query: 199 KKL-RNKLGFDPVDSKRFLGYSID 221
            K+ RN    + + + R LGY  +
Sbjct: 206 SKIERNPSRPEILVTVRGLGYKFE 229


>gi|229119327|ref|ZP_04248628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228664089|gb|EEL19629.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
          Length = 214

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 13/166 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 56  FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 113

Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            SNN++         + V  D     V     PL  +E  IL+ L+ N  K + +  I  
Sbjct: 114 -SNNQSTDNHFVFKELHVDGDAYKVYVNRVDVPLTTKEFEILQLLLQNEKKVLTRENIVE 172

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A +  ++++H+  +RK    KL    + + + +GY ID
Sbjct: 173 KIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 213


>gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 223

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 11/164 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S+VP+I ++    +   +   D G DD + KP  + E++AR+ A+ RR K
Sbjct: 62  IEVCKRIREFSEVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKALIRRTK 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIF 174
             NN+ E     V+ D +      EVF       L +RE  +L+YL+ N+G  +++ +I 
Sbjct: 122 KRNNQEEF----VYEDLKINYSTYEVFRGETLISLSKREFELLDYLVLNKGIVLSRDKIL 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++G F+    +N+++ +I  LR K+        + + R LG+
Sbjct: 178 ENVWG-FEYIGNDNILDLYIKYLRDKIDKPYERKFIQTVRGLGF 220


>gi|218893871|ref|YP_002442740.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa LESB58]
 gi|218774099|emb|CAW29915.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa LESB58]
          Length = 221

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 12/135 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
            DSG DD + KP +  E+ ARV A+ RR   +  RA      G +R+        + G+ 
Sbjct: 91  LDSGADDYLTKPFYLDELQARVRALTRR---TTGRALPQLVHGELRLDPATHQVTLSGQA 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  RE  +L  L+ N GK +++ Q+  ++YG +   VE N +E H+  LR+KL N+L 
Sbjct: 148 VELAPREYALLRLLLENSGKVLSRNQLEQSLYG-WSGDVESNAIEVHVHHLRRKLGNQL- 205

Query: 207 FDPVDSKRFLGYSID 221
              + + R +GY ID
Sbjct: 206 ---IRTVRGIGYGID 217


>gi|325663524|ref|ZP_08151934.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087049|ref|ZP_08336123.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470423|gb|EGC73654.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330409329|gb|EGG88776.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 225

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 80/145 (55%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R HS+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR  V
Sbjct: 65  QVCREVRMHSKVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVEAILRRTNV 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G I V     + ++ G    L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 FAADEVVDAGGISVDKAAHEVKIDGVPIDLSYKEFELLAYFIENQGIALSREKILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL +K
Sbjct: 185 -YDYFGDARTIDTHVKKLRNKLGDK 208


>gi|254483612|ref|ZP_05096835.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036121|gb|EEB76805.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 222

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 19/219 (8%)

Query: 16  IALFGDD---GVSLEGFNSLEFE--EWLQSS--AREDVSAIEAFLIGKGEKVLELP---- 64
           I L  DD   G SLE    LE    +WL+S    R  + A    L+     + E+P    
Sbjct: 7   ILLVEDDVQLGESLEAALRLEHYAVDWLRSGEPVRATIGATPYDLMILDLGLPEVPGIQV 66

Query: 65  -RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
            R  RA    +P++ ++   +L   +D  DSG DD + KP    E+ ARV  + RR  + 
Sbjct: 67  LRQTRADKHDIPVLLLTARNTLDDKVDGLDSGADDYLTKPFEIDELFARVRTLLRRRGEG 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + E   I +    R    +GE+  L  RE  ILE L+ N G+ V++ ++   IY  +
Sbjct: 127 RSQQLEARGITIDPVDRLVIFEGEMLDLTAREYAILEILIRNAGRFVSRPRLEEGIYS-W 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E V  N VE +IS+LRK    + G D +++ R +GY I
Sbjct: 186 GEEVGSNTVEVYISRLRK----RFGSDCIETMRGVGYRI 220


>gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni
           ACN14a]
 gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR,
           regulation of Pi uptake (OmpR family) [Frankia alni
           ACN14a]
          Length = 226

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 8/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRTLRTRSSVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  +     V G +  LP +E  +LE  + N G+ + + Q+   +
Sbjct: 122 TEEVAEATLEAGPVRMDVERHVVTVDGSMVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  + G +P  + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEREPG-NPRHLVTVRGLGYKFE 225


>gi|94498224|ref|ZP_01304785.1| two-component response regulator [Sphingomonas sp. SKA58]
 gi|94422354|gb|EAT07394.1| two-component response regulator [Sphingomonas sp. SKA58]
          Length = 221

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 8/150 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132
           P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR    +++    G +R
Sbjct: 74  PVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRASGNASSELTAGDVR 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191
           + +      ++G+   L  +E ++L YL+ ++GK V++T++   IY   FD   + N +E
Sbjct: 134 LDTRSGKVTLKGDPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQDFDR--DSNTIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++++RK    KLG D + + R LGYS+D
Sbjct: 192 VFVTRIRK----KLGADVITTIRGLGYSLD 217


>gi|27367654|ref|NP_763181.1| DNA-binding response regulator [Vibrio vulnificus CMCP6]
 gi|27359226|gb|AAO08171.1| DNA-binding response regulator [Vibrio vulnificus CMCP6]
          Length = 218

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +LI+D  L+    +      G +++    LE    + S+ + ED +A+   L       
Sbjct: 3   LLLIEDDTLLGQSMVTSLSRHGYTVDW---LEKGSGVTSALKTEDFTAVILDLTLPDIDG 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R IR+    +P++ ++    ++  +   D G DD + KP    E+LAR+  + RR 
Sbjct: 60  LDVLRNIRSAGFSLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQ 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             S     E G + +    +    Q  V  L R E +IL  LM N G+ ++K Q+  +++
Sbjct: 120 SGSATEVIEVGELSLSLSEQSIRYQEVVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLH 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D++  +N +E HI  LRKK  N     P+ + R +GY I+
Sbjct: 180 G-WDDSASDNAIEVHIHNLRKKAPNV----PIKNIRGVGYIIE 217


>gi|19746167|ref|NP_607303.1| response regulator [Streptococcus pyogenes MGAS8232]
 gi|21910410|ref|NP_664678.1| putative DNA-binding response regulator [Streptococcus pyogenes
           MGAS315]
 gi|28895986|ref|NP_802336.1| response regulator [Streptococcus pyogenes SSI-1]
 gi|50914283|ref|YP_060255.1| CiaR [Streptococcus pyogenes MGAS10394]
 gi|56807753|ref|ZP_00365614.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71903585|ref|YP_280388.1| transcriptional regulatory protein [Streptococcus pyogenes
           MGAS6180]
 gi|94988681|ref|YP_596782.1| transcriptional regulatory protein [Streptococcus pyogenes
           MGAS9429]
 gi|94990571|ref|YP_598671.1| transcriptional regulatory protein ciaR [Streptococcus pyogenes
           MGAS10270]
 gi|94992504|ref|YP_600603.1| transcriptional regulatory protein ciaR [Streptococcus pyogenes
           MGAS2096]
 gi|94994493|ref|YP_602591.1| CiaR family transcriptional regulator [Streptococcus pyogenes
           MGAS10750]
 gi|139473693|ref|YP_001128409.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209559503|ref|YP_002285975.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes
           NZ131]
 gi|306827286|ref|ZP_07460573.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
 gi|19748346|gb|AAL97802.1| putative response regulator [Streptococcus pyogenes MGAS8232]
 gi|21904608|gb|AAM79481.1| putative DNA-binding response regulator [Streptococcus pyogenes
           MGAS315]
 gi|28811236|dbj|BAC64169.1| putative response regulator [Streptococcus pyogenes SSI-1]
 gi|50903357|gb|AAT87072.1| CiaR [Streptococcus pyogenes MGAS10394]
 gi|71802680|gb|AAX72033.1| transcriptional regulatory protein [Streptococcus pyogenes
           MGAS6180]
 gi|94542189|gb|ABF32238.1| transcriptional regulatory protein [Streptococcus pyogenes
           MGAS9429]
 gi|94544079|gb|ABF34127.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes
           MGAS10270]
 gi|94546012|gb|ABF36059.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes
           MGAS2096]
 gi|94548001|gb|ABF38047.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes
           MGAS10750]
 gi|134271940|emb|CAM30178.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209540704|gb|ACI61280.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes
           NZ131]
 gi|304430433|gb|EFM33455.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 224

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 2/153 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130
           ++P++ ++    L      F+ G DD + KP +  E+  R+ A+ +R  K ++     G 
Sbjct: 72  KIPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTGKFADKNISFGN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V    ++ +V+G+V  L  +E  +L YL+ N+   + KTQIF  ++G FD     +VV
Sbjct: 132 LVVDLARKEVKVEGKVVELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG-FDSDTTISVV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           E +ISK+RKKL+     + + + R +GY +  N
Sbjct: 191 EVYISKIRKKLKGTRFVNRLQTLRSVGYILKNN 223


>gi|295094577|emb|CBK83668.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 239

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 13/145 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           +R  SQVP+I  S   S    ++  D G DD + KP   +E+++R+ +I RR   V +N+
Sbjct: 74  LRHTSQVPIIFASARTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYGVDDNK 133

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQIFSA 176
           +E   + + +DG + E+      + R         +E  +L Y+  NRG+ + K QI SA
Sbjct: 134 SEM--LTLNTDGNEIEINRHARTVNRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQIMSA 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++GL+ + VE + V  H+  LR+KL
Sbjct: 192 VWGLYSD-VEPSTVAVHVRWLREKL 215


>gi|257064017|ref|YP_003143689.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791670|gb|ACV22340.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 228

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           RA+   P++ ++   ++   +   DSG DD + KP    E+LA + A+ RR  +V   + 
Sbjct: 68  RANLDTPVLLLTARDAIPDKITGLDSGADDYMTKPFSPAELLAHLRALTRRQGQVVFEKL 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           E G + +  +  D     +   L  +E  I   LM+N G+ ++K Q+ S ++G+ +   +
Sbjct: 128 EAGDLSLNLESHDLSSGQKTINLSFKEYEIANILMSNAGQIISKEQLISKVWGV-ESTAD 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +N VE++IS LRKKL+       +D+ R +GY ++
Sbjct: 187 DNNVEAYISFLRKKLKFLGSSVSIDTVRRVGYKLN 221


>gi|85708091|ref|ZP_01039157.1| two-component response regulator [Erythrobacter sp. NAP1]
 gi|85689625|gb|EAQ29628.1| two-component response regulator [Erythrobacter sp. NAP1]
          Length = 225

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 8/150 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132
           P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR   + +   T G +R
Sbjct: 74  PVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNTSSELTAGGVR 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191
           + +      + GE   L  +E ++L YLM ++GK V++T++   IY   FD   + N +E
Sbjct: 134 LDTRSGRVTLDGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYDQDFDR--DSNTIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++++RK    KLG + + + R LGYS+D
Sbjct: 192 VFVTRIRK----KLGAEVITTIRGLGYSLD 217


>gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 222

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 16/198 (8%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+ + ALF +DG   +  F +  F+  L      D+S         G  VL   + IR
Sbjct: 21  LEKNNFDALFAEDGSTGINMFKNNSFDIVLLDVMLPDMS---------GWNVL---KTIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126
             S++P++ I+        L  F+ G DD V KP   RE++AR+ AI  R K   S+N  
Sbjct: 69  ESSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAILSRSKWAESDNSI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               I + +D R  +V G+   L  +E  +L  L  N GK +++ +  + ++G ++   +
Sbjct: 129 SFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNIVWG-YEFFGD 187

Query: 187 ENVVESHISKLRKKLRNK 204
              V++HI +LR+KL +K
Sbjct: 188 LRTVDTHIKQLREKLGDK 205


>gi|223983544|ref|ZP_03633727.1| hypothetical protein HOLDEFILI_01008 [Holdemania filiformis DSM
           12042]
 gi|223964472|gb|EEF68801.1| hypothetical protein HOLDEFILI_01008 [Holdemania filiformis DSM
           12042]
          Length = 237

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 2/153 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLKVSNNRAETGP 130
           Q  ++ +S   S+   +   D G DD + KP H  E+LAR+  +  RR    +     G 
Sbjct: 81  QQKVLILSARGSVGDKVKGLDLGADDYLVKPFHFEELLARIRNLTGRRFIRQDVVVCRGS 140

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +R+ +      V+ +   L  +E +ILE L  + GKR++   I S ++G  DE +  N  
Sbjct: 141 LRIDTGSHQVYVRDQRLKLTAKETQILETLALHEGKRLSAETIISQVWG-EDEDLFSNAF 199

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + H+S LR+KL    G D ++ +R LGY +  N
Sbjct: 200 KVHLSSLRRKLAAASGEDWIECQRGLGYCLKEN 232


>gi|149203840|ref|ZP_01880809.1| two component transcriptional regulator, winged helix family
           protein [Roseovarius sp. TM1035]
 gi|149142957|gb|EDM30999.1| two component transcriptional regulator, winged helix family
           protein [Roseovarius sp. TM1035]
          Length = 238

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R  +  P++ +S     ++ +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLARIAT--PILILSGADDTESKIKGFGFGADDYLTKPFHRDELVARIHAII 116

Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG I V  D +  +  G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSVIRTGKINVNLDAKTVDAGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|326387920|ref|ZP_08209526.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207966|gb|EGD58777.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 225

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 83/151 (54%), Gaps = 10/151 (6%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPI 131
           P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR    N+ AE   G +
Sbjct: 74  PVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRR-STGNSSAELIAGDV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190
           R+ +      + GE   L  +E ++L YL+ ++GK V++T++   IY   FD   + N +
Sbjct: 133 RLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQDFDR--DSNTI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  ++++RK    KLG D + + R LGYS++
Sbjct: 191 EVFVTRIRK----KLGPDVITTIRGLGYSLN 217


>gi|293553530|ref|ZP_06674158.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1039]
 gi|291602407|gb|EFF32631.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1039]
          Length = 224

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 5/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I +   Q P++ ++   SL+  ++ F+ G DD + KP +  E++ RV A+ +R    
Sbjct: 63  LAKIRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGL 122

Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        +  D +  EV  + +V P+  +E  +L Y + N+G  + K QIF  I+G 
Sbjct: 123 FDENVLKYKDISYDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           FD      V+E ++S LRK LR+  G D  + + R +GY
Sbjct: 182 FDSDTTITVIEVYMSNLRKHLRST-GLDKEIKTLRNVGY 219


>gi|87200082|ref|YP_497339.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135763|gb|ABD26505.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 225

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 8/152 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGP 130
           + P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR    S++    G 
Sbjct: 72  KFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNSSSELTAGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
           +R+ +      + GE   L  +E ++L YL+ ++GK V++T++   IY   FD   + N 
Sbjct: 132 VRLDTRSGRVTLNGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQDFDR--DSNT 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  ++++RK    KLG D + + R LGYS+D
Sbjct: 190 IEVFVTRIRK----KLGPDVITTIRGLGYSLD 217


>gi|159040344|ref|YP_001539597.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157919179|gb|ABW00607.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 229

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+IR+ S+VP++ I+   S    +   +SG DD V KP     ILAR++A+ RR +   +
Sbjct: 65  RMIRSISEVPVVVITARRSETDIIHLLNSGADDYVTKPFSGEHILARISAVLRRYRSGTD 124

Query: 125 RA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        GP+ +    R   + G+   L RRE  +L YL    G+ V++ ++ + ++ 
Sbjct: 125 QEGPGTITVGPLVIGRKERRVTMDGKPLKLTRREYDVLTYLAERAGQVVSRRELMTEVWR 184

Query: 180 LFDEAVEENVVESHISKLRKKL 201
                 EE  ++ HIS LR+KL
Sbjct: 185 QARIG-EEQTIDVHISWLRRKL 205


>gi|251782466|ref|YP_002996768.1| putative response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391095|dbj|BAH81554.1| putative response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 224

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 2/148 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130
           ++P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K ++     G 
Sbjct: 72  KIPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTGKFTDKNLAFGN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V    ++ +V G    L  +E  +L YL+ N+   + KTQIF  ++G FD     +VV
Sbjct: 132 VVVDLGQKEVQVDGRPIELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG-FDSDTTISVV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E ++SK+RKKL+     D + + R +GY
Sbjct: 191 EVYVSKIRKKLKGTDFVDKLQTLRSVGY 218


>gi|149204695|ref|ZP_01881659.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseovarius sp. TM1035]
 gi|149141804|gb|EDM29856.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseovarius sp. TM1035]
          Length = 225

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 8/164 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L   +R   +VP+I ++    L   L   D G DD V KP+   E++AR  A+ RR  
Sbjct: 60  LRLLPTLRQGGRVPVIVLTARDQLADRLAGLDGGADDYVVKPVEMPELVARARAVLRR-- 117

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +R++T    G + + +  R   V      L RRE  +LE+LM N G+  ++  +  A
Sbjct: 118 -PGDRSDTTLRLGALSLDTAARSVSVNDAPIILGRRELGVLEHLMRNAGRVASRKVLEEA 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           IY + DE V  N +E+ +S+LR+ L       P+ + R +G+ +
Sbjct: 177 IYTIDDE-VTPNALEAAVSRLRRALETAGCPVPIVNVRGVGWML 219


>gi|125624324|ref|YP_001032807.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|7669466|gb|AAF66142.1| putative response regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493132|emb|CAL98096.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071107|gb|ADJ60507.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 228

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 20/225 (8%)

Query: 15  YIALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAF--------------LIGKGE 58
           Y  L  +D  S+  +    L FE++  S+A + ++A+E F              +I K +
Sbjct: 3   YHVLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLD 62

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +  L R+ +     P+I ++    +   +   D+G DD + KP    E+LAR+  I+R+
Sbjct: 63  GLTVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRK 122

Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              S ++  E   ++V       EV G+   L +RE  +L Y + +RG  V++  I   +
Sbjct: 123 WSTSRSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDDV 182

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+ FD   +EN V++++  LR  +        +++ R +GY ++
Sbjct: 183 WGMDFDG--QENTVDAYVRYLRATIDLPNHKSLIETVRGVGYRLN 225


>gi|328545642|ref|YP_004305751.1| Two component transcriptional regulator, winged helix family
           [polymorphum gilvum SL003B-26A1]
 gi|326415382|gb|ADZ72445.1| Two component transcriptional regulator, winged helix family
           [Polymorphum gilvum SL003B-26A1]
          Length = 219

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 7/156 (4%)

Query: 67  IRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +RA   V P+I ++    +   ++  ++G DD + KP    E+ AR+ ++ RR   + N 
Sbjct: 66  LRARGDVTPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYSGNPNP 125

Query: 126 AET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             T G + +    R     G   PL  RE  + E  +A  G+ ++K Q+   +Y  FD  
Sbjct: 126 ILTHGALDIDLAARSVHRDGRPVPLTAREWALFEAFLARPGQLLSKAQLEEKLYA-FDAE 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           VE N +E H+S+LRK    KLG   ++++R +GY +
Sbjct: 185 VESNTIEVHVSRLRK----KLGTSVIETERGMGYRL 216


>gi|254469487|ref|ZP_05082892.1| DNA-binding response regulator [Pseudovibrio sp. JE062]
 gi|211961322|gb|EEA96517.1| DNA-binding response regulator [Pseudovibrio sp. JE062]
          Length = 222

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 57  GEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  LE  R +R   + VP++ +S   + +  +D  + G DD + KP    E+LAR  A+
Sbjct: 56  GQDGLEFLRAVRDDKADVPILILSARETTKNRIDGLNLGADDYLTKPFDMEELLARCRAL 115

Query: 116 YRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR  V   R   + G + +  D +     G    L     R+L  L+  RG+ V+K+ +
Sbjct: 116 VRR-SVGRTRMLLQHGALTLDLDQKKACYNGAEVVLQPLAFRLLTILLERRGRVVSKSDL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +YG ++E  E NV+E ++S++R+K  +KL    + + R +GY +D
Sbjct: 175 MEKLYG-WEENAESNVLEVYVSQIRRKTTSKL----IRTIRGVGYIVD 217


>gi|148550755|ref|YP_001260194.1| cell cycle transcriptional regulator CtrA [Sphingomonas wittichii
           RW1]
 gi|148503174|gb|ABQ71427.1| cell cycle transcriptional regulator CtrA [Sphingomonas wittichii
           RW1]
          Length = 233

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++     + P++ +S    L + +  F  G D+ + KP H  E++AR+ A+ RR   S
Sbjct: 63  LKKLRMGRVETPVLILSGISELDSKVRAFAMGADEYLTKPFHKVELVARINAVVRR---S 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              AE+    G I V  DG+  EV G    L  +E  +LE L   +G  + K    + +Y
Sbjct: 120 KGHAESVIRIGKIAVNLDGKVAEVDGARIHLTGKEYAMLELLALRQGSTLTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206
           G  DE  E  +++  I KLRKKL    G
Sbjct: 180 GGIDEP-ELKIIDVFICKLRKKLTLACG 206


>gi|121535649|ref|ZP_01667454.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121305753|gb|EAX46690.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 224

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 10/147 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +RA    +P++ ++   S+   ++  ++G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LEIIKRVRATGHTMPILLLTARDSVADRVNGLETGADDYLTKPFAIPELLARIKALLRR- 118

Query: 120 KVSNNRAETGPIR---VFSDG--RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             S N  + G I    V  DG  RD  V+G+   L  +E  +LE+LM N+ + + + QIF
Sbjct: 119 --SGNLGKDGKISYGGVVIDGKLRDGFVEGQALGLTAKEYELLEFLMLNKEQILTREQIF 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G F      +VV+ +I  LRKKL
Sbjct: 177 DRVWG-FASETTISVVDLYIHYLRKKL 202


>gi|16119399|ref|NP_396105.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15161927|gb|AAK90546.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 224

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 17/225 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D         G+ L+    L         A  D+  I+  L   G+   
Sbjct: 3   LLLIEDDPEMTDALKVALSQHGIVLDAVGDLATAREAIIMADYDIVLIDRQL-PDGDGST 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L  + RA S    I IS   S    +   + G DD + KP    E++AR++A+ RR   
Sbjct: 62  FLADLRRAGSNTRSIIISALRSTDERISGLNDGADDYLPKPFEIPELVARMSAVLRRAPT 121

Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 TGP  V S G         D  V G    L RRE  I+E L+ NRG+ V ++ +
Sbjct: 122 ------TGPF-VLSAGNVTYDRVSCDVHVNGIRLALTRRELLIIETLLRNRGRTVLRSSL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +Y  FD+ ++ N +ES++S+LR+KL        + + R +GY
Sbjct: 175 EGQVYS-FDDEIQSNSLESNMSRLRRKLGEAEADIVIKNIRGIGY 218


>gi|304321358|ref|YP_003855001.1| two-component transcriptional regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303300260|gb|ADM09859.1| two-component transcriptional regulator [Parvularcula bermudensis
           HTCC2503]
          Length = 230

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 6/147 (4%)

Query: 57  GEKVLELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G  VL+  R+ + ++ +  L G+ D  +    L F   G DD + KP H  E++AR+ AI
Sbjct: 59  GFDVLKSLRVAKVNTPILILTGLGDTENKVRGLGF---GADDYMTKPFHKDELVARIHAI 115

Query: 116 YRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR K  S +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    
Sbjct: 116 VRRSKGHSQSVITTGALTVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFL 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
           + +YG  DE  E  +++  I KLRKKL
Sbjct: 176 NHLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|53716767|ref|YP_105784.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC
           23344]
 gi|167722921|ref|ZP_02406157.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           DM98]
 gi|167741901|ref|ZP_02414675.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 14]
 gi|167819082|ref|ZP_02450762.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 91]
 gi|167827467|ref|ZP_02458938.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 9]
 gi|167848936|ref|ZP_02474444.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           B7210]
 gi|167897542|ref|ZP_02484944.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           7894]
 gi|167905895|ref|ZP_02493100.1| DNA-binding response regulator TctD [Burkholderia pseudomallei NCTC
           13177]
 gi|167914202|ref|ZP_02501293.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 112]
 gi|167922113|ref|ZP_02509204.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           BCC215]
 gi|254179157|ref|ZP_04885809.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC
           10399]
 gi|254189737|ref|ZP_04896246.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254193179|ref|ZP_04899614.1| DNA-binding response regulator TctD [Burkholderia pseudomallei S13]
 gi|254356588|ref|ZP_04972863.1| DNA-binding response regulator TctD [Burkholderia mallei
           2002721280]
 gi|52422737|gb|AAU46307.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC
           23344]
 gi|148025615|gb|EDK83738.1| DNA-binding response regulator TctD [Burkholderia mallei
           2002721280]
 gi|157937414|gb|EDO93084.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160694484|gb|EDP84494.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC
           10399]
 gi|169649933|gb|EDS82626.1| DNA-binding response regulator TctD [Burkholderia pseudomallei S13]
          Length = 223

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LDVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   + R E GP+   S  R   +  +   L  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL    G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVHRLRKKLEGS-GVAIV-TLRGLGYLLE 219


>gi|153812201|ref|ZP_01964869.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
 gi|149831608|gb|EDM86695.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
          Length = 227

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 78/145 (53%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR +S+VP+I ++     +  L  FD GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  EVCREIRKNSKVPIIMLTARGDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTGQ 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N+    G I +        V G+   L  +E  +L Y + N+G  +++ +I ++++ 
Sbjct: 125 DAGNDVLSAGGIVIDKSAHQASVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR K+ +K
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKMGDK 208


>gi|257870932|ref|ZP_05650585.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257805096|gb|EEV33918.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 224

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 6/156 (3%)

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN- 123
           +R H+ Q P++ ++    L+  +  F  G DD + KP +  E+L R  A+ +R L + N 
Sbjct: 66  LRQHTVQTPVLILTAKDGLEDKVAGFQKGADDYLTKPFYREELLMRCKALLKRSLGLFNE 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N+     +       +  +  ++ P+  +E  +L Y + NRG  + K QIF  I+G FD 
Sbjct: 126 NQVVYKGLTCNLSTNEVTIDEKLLPIQGKEFALLVYFLQNRGIILTKEQIFDRIWG-FDS 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
                VVE +IS LRK LR+  G D  + + R +GY
Sbjct: 185 ETTITVVEVYISNLRKHLRDT-GIDKEIRTLRNVGY 219


>gi|171741317|ref|ZP_02917124.1| hypothetical protein BIFDEN_00396 [Bifidobacterium dentium ATCC
           27678]
 gi|283455323|ref|YP_003359887.1| response regulator protein Vicr [Bifidobacterium dentium Bd1]
 gi|171276931|gb|EDT44592.1| hypothetical protein BIFDEN_00396 [Bifidobacterium dentium ATCC
           27678]
 gi|283101957|gb|ADB09063.1| Response regulator protein VicR [Bifidobacterium dentium Bd1]
          Length = 234

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LARV A+ RR ++ 
Sbjct: 63  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARVRAVLRRNQMV 122

Query: 122 --SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             S++ ++       G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 123 AESDSASDDDIPLVCGDISMKIGQHEVSVRGENVFFPLKEFELLEYLMQNKGRVMTRHQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP   K     R LGY ID
Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|144900258|emb|CAM77122.1| two-component cell cycle transcriptional regulator ctrA, winged
           helix family [Magnetospirillum gryphiswaldense MSR-1]
          Length = 233

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA   + P++ +S        +     G DD + KP    E++AR+ AI RR K
Sbjct: 61  EVLRRLRASRIETPVLILSGLTEPDKKIKGLGFGADDYLTKPFDKGELVARIQAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  +TG + V  D R  +V GE   L  +E  ILE L   +G+ + K Q  + +YG
Sbjct: 121 GHAQSVIKTGKLSVNLDQRTVDVGGEPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD 208
             DE  E  +++  I KLRKKL    G D
Sbjct: 181 GIDEP-ELKIIDVFICKLRKKLSTATGGD 208


>gi|124382081|ref|YP_001023940.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC
           10229]
 gi|126445475|ref|YP_001062036.1| transcriptional regulatory protein TctD [Burkholderia pseudomallei
           668]
 gi|126446503|ref|YP_001078685.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC
           10247]
 gi|126457411|ref|YP_001074988.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1106a]
 gi|217418642|ref|ZP_03450149.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 576]
 gi|226195063|ref|ZP_03790654.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           Pakistan 9]
 gi|237510327|ref|ZP_04523042.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           MSHR346]
 gi|238563076|ref|ZP_00439448.2| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse
           4]
 gi|242313060|ref|ZP_04812077.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1106b]
 gi|251766834|ref|ZP_02265115.2| DNA-binding response regulator TctD [Burkholderia mallei PRL-20]
 gi|254183073|ref|ZP_04889665.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1655]
 gi|254200597|ref|ZP_04906962.1| DNA-binding response regulator TctD [Burkholderia mallei FMH]
 gi|254204618|ref|ZP_04910971.1| DNA-binding response regulator TctD [Burkholderia mallei JHU]
 gi|254264953|ref|ZP_04955818.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1710a]
 gi|254300010|ref|ZP_04967456.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           406e]
 gi|124290101|gb|ABM99370.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC
           10229]
 gi|126224966|gb|ABN88471.1| transcriptional regulatory protein TctD [Burkholderia pseudomallei
           668]
 gi|126231179|gb|ABN94592.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1106a]
 gi|126239357|gb|ABO02469.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC
           10247]
 gi|147748209|gb|EDK55284.1| DNA-binding response regulator TctD [Burkholderia mallei FMH]
 gi|147754204|gb|EDK61268.1| DNA-binding response regulator TctD [Burkholderia mallei JHU]
 gi|157809872|gb|EDO87042.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           406e]
 gi|184213606|gb|EDU10649.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1655]
 gi|217397946|gb|EEC37961.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 576]
 gi|225932868|gb|EEH28864.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002532|gb|EEP51956.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           MSHR346]
 gi|238521412|gb|EEP84864.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse
           4]
 gi|242136299|gb|EES22702.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1106b]
 gi|243064584|gb|EES46770.1| DNA-binding response regulator TctD [Burkholderia mallei PRL-20]
 gi|254215955|gb|EET05340.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1710a]
          Length = 252

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 89  LDVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 148

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   + R E GP+   S  R   +  +   L  RER +LE L+   G+ + K  +   I+
Sbjct: 149 LGHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 208

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           GL DE+V  + +E ++ +LRKKL
Sbjct: 209 GL-DESVNADAIEIYVHRLRKKL 230


>gi|84498453|ref|ZP_00997223.1| response regulator receiver [Janibacter sp. HTCC2649]
 gi|84381196|gb|EAP97080.1| response regulator receiver [Janibacter sp. HTCC2649]
          Length = 226

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 14/178 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   +++ R +R  S VP+I ++   S    +   + G DD V KP   RE+LAR+
Sbjct: 53  LMLPGLSGVDVCRALRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARI 112

Query: 113 AAIYRRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            A+ RRL    ++     E GP+R+  +     V G    LP +E  +LE L+ N G+ +
Sbjct: 113 KAVLRRLSEPEELLPTTLEAGPVRMDVERHVVTVGGAATQLPLKEFELLEMLLRNTGRVL 172

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
            + Q+   ++G  D   +   ++ H+    K+LR K+  DP   K     R LGY  +
Sbjct: 173 TRMQLIDRVWG-SDYVGDTKTLDVHV----KRLRAKVEPDPAAPKHIVTVRGLGYKFE 225


>gi|284035840|ref|YP_003385770.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283815133|gb|ADB36971.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 223

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R IR  + +VP++ ++    L    + F SG DD + KP   RE+L RV A+ RR 
Sbjct: 60  FELCRYIRQQTNEVPVLLLTALDGLNDKAEGFGSGADDYLCKPFEFRELLWRVQALTRRH 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                R  +   + +  D R     G+  PL   E  +LEYLM NRG+ V++  I   ++
Sbjct: 120 YRERQRVLQVADLVLDPDARQVIRGGKHIPLTSHEYALLEYLMRNRGQVVSRVDIAERVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + A   NV++ ++  LRKK+        + +   +GY +
Sbjct: 180 EV-NLATSTNVIDVYMGYLRKKVDRDFASKLLHTVVGMGYVL 220


>gi|58584853|ref|YP_198426.1| response regulator [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419169|gb|AAW71184.1| Response regulator consisting of a CheY-like receiver domain and
           wHTH-type DNA-binding domain [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 256

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 9/196 (4%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVLELPRI 66
            AL  DG+   F D   S + +N+      + S+    D+  ++  L G  +    L R+
Sbjct: 18  NALTSDGH---FCDVVTSAQDYNN----NMVSSNGDHYDLVILDIHLPGDIDGYDILLRL 70

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNR 125
             A  +VP++ +S   ++         G DD + KP H  E+LAR+ AI RR K    + 
Sbjct: 71  RSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIVRRTKGHPESV 130

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G I +  D R  EV+G+   L  +E  ++E L   +G  + K      +Y   DE  
Sbjct: 131 IKIGNININFDHRVVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLDHLYNGLDEPS 190

Query: 186 EENVVESHISKLRKKL 201
           +  +V+  + KLRKKL
Sbjct: 191 DNKIVDVFMCKLRKKL 206


>gi|269958512|ref|YP_003328299.1| putative response regulator [Anaplasma centrale str. Israel]
 gi|269848341|gb|ACZ48985.1| putative response regulator [Anaplasma centrale str. Israel]
          Length = 294

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
           +VP++ +S   S+   +     G DD + KP H  E+LAR+ AI RR +    +    G 
Sbjct: 77  KVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVRRTRGHPESIVRVGN 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +  D +  E  GE+  L ++E  ++E L +  G  + K    S +Y   DE  ++ ++
Sbjct: 137 ISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 196

Query: 191 ESHISKLRKKLR 202
           +  + KLRKKL+
Sbjct: 197 DVFMCKLRKKLK 208


>gi|82751956|ref|YP_417697.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|123549423|sp|Q2YZ24|HSSR_STAAB RecName: Full=Heme response regulator hssR
 gi|82657487|emb|CAI81929.1| two-component response regulator [Staphylococcus aureus RF122]
          Length = 224

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L    R D++ I+  +   G    +L   ++    +P+I ++   +L      F SG DD
Sbjct: 40  LLEKQRVDIAVIDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156
            V KP   +E++ R+ A+ RR  +++N   T G + +     + +V  +   LP +E ++
Sbjct: 98  YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157

Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           L +++A R K++  + QI   I+G +D   +E  V+ HI +LR++L+       +++ R 
Sbjct: 158 L-FMLATRPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215

Query: 216 LGYSID 221
            GY ++
Sbjct: 216 QGYKVE 221


>gi|325525528|gb|EGD03325.1| signal transduction response regulator [Burkholderia sp. TJI49]
          Length = 196

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 4/157 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+ R +  VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR   V
Sbjct: 34  LARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQAGV 93

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +   G +      R+         L RRE  ILE LM  + K V+K ++  +++ L 
Sbjct: 94  GATQLACGDLVYAFGTREFRCGDAPLALRRREHAILETLMLQQNKTVSKARLMDSVFALD 153

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           DE    + ++ +I +LRK L        + + R LGY
Sbjct: 154 DEP-SADAIDIYIHRLRKHLAASTA--EIITLRGLGY 187


>gi|317010679|gb|ADU84426.1| OmpR family two-component system response regulator [Helicobacter
           pylori SouthAfrica7]
          Length = 223

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 32/231 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55
           M +L+ ++  V  G I    + G++++GF      SLE  E+L      D+   +  ++ 
Sbjct: 1   MRILLIEKNSVLGGEI----EKGLNIKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +  + RI   H  + ++  SD P+ +  +  F+ G DD + KP  +R I A VA I
Sbjct: 52  DKNALSFVSRIKEKHPSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109

Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             RL+   +N  E G + +  D       GR+ EV+G+ F        +L +L  +R + 
Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+K Q+  AI+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212


>gi|209963810|ref|YP_002296725.1| two component response transcriptional regulator [Rhodospirillum
           centenum SW]
 gi|209957276|gb|ACI97912.1| two component response transcriptional regulator [Rhodospirillum
           centenum SW]
          Length = 219

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 8/151 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131
            P++ ++   + Q  ++  D+G DD + KP    E+LAR+ A+ RR    +      GP+
Sbjct: 73  TPVLILTARGTWQEKVEGIDAGADDYLAKPFRMEELLARLRALIRRAGGHAAADLRCGPV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190
            + +      V G +  L   E ++L+YLM ++G+ V++T++   +Y   FD   + N +
Sbjct: 133 LLDTRTGRVSVDGRLVSLTAHELKVLDYLMHHQGRVVSRTELTEHVYAQDFDR--DSNTI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  + +LR+    KLG D + ++R LGY +D
Sbjct: 191 EVFVGRLRR----KLGVDVIRTERGLGYRMD 217


>gi|167957496|ref|ZP_02544570.1| two component transcriptional regulator, winged helix family
           protein [candidate division TM7 single-cell isolate
           TM7c]
          Length = 224

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 2/150 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPI 131
            P I ++        +   D+G DD + KP    E+LAR+ AI RR K +     + G +
Sbjct: 75  TPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRRPKKAQPTILKVGKL 134

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            + +  R  E   +   L  +E  +L+YLM + G+ ++K QI   ++  FD  +  N VE
Sbjct: 135 HIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHVWN-FDADILPNTVE 193

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++I  LRKK+  K     + + R +GY ++
Sbjct: 194 AYIKALRKKIDEKYKVKYIKTVRGIGYRLE 223


>gi|149021563|ref|ZP_01835618.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930259|gb|EDK81244.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP23-BS72]
          Length = 218

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 106/219 (48%), Gaps = 6/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   +
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                    +V  +     + G+  P+  +E  IL+YL+ N G+ + ++QI  A++   D
Sbjct: 122 GRIFSYKATKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKATD 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|84502373|ref|ZP_01000509.1| transcriptional activator protein czcR [Oceanicola batsensis
           HTCC2597]
 gi|84389185|gb|EAQ01982.1| transcriptional activator protein czcR [Oceanicola batsensis
           HTCC2597]
          Length = 237

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 7/104 (6%)

Query: 102 PIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157
           P+   E+ +R+ +I RR   S+  A    + G +  F DGRDPEV G V  L RRE  I 
Sbjct: 103 PVKAVELRSRINSITRR---SHGHAAESIQVGEVTAFFDGRDPEVSGGVVKLSRREHAIF 159

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + L+ N G+ V+K  I+ A+YG+ ++   + V++ +I K+RKK+
Sbjct: 160 QQLVLNAGRVVSKGAIYDAVYGMAEDQPFDKVIDVYICKIRKKI 203


>gi|16803100|ref|NP_464585.1| hypothetical protein lmo1060 [Listeria monocytogenes EGD-e]
 gi|47096149|ref|ZP_00233749.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes str. 1/2a F6854]
 gi|224500297|ref|ZP_03668646.1| hypothetical protein LmonF1_11754 [Listeria monocytogenes Finland
           1988]
 gi|224502626|ref|ZP_03670933.1| hypothetical protein LmonFR_08914 [Listeria monocytogenes FSL
           R2-561]
 gi|254828437|ref|ZP_05233124.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL N3-165]
 gi|254830171|ref|ZP_05234826.1| hypothetical protein Lmon1_02380 [Listeria monocytogenes 10403S]
 gi|254898767|ref|ZP_05258691.1| hypothetical protein LmonJ_03090 [Listeria monocytogenes J0161]
 gi|254911744|ref|ZP_05261756.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes J2818]
 gi|254936070|ref|ZP_05267767.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes F6900]
 gi|284801392|ref|YP_003413257.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578]
 gi|284994534|ref|YP_003416302.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923]
 gi|16410462|emb|CAC99138.1| lmo1060 [Listeria monocytogenes EGD-e]
 gi|47015498|gb|EAL06431.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes str. 1/2a F6854]
 gi|258600833|gb|EEW14158.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL N3-165]
 gi|258608660|gb|EEW21268.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes F6900]
 gi|284056954|gb|ADB67895.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578]
 gi|284060001|gb|ADB70940.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923]
 gi|293589695|gb|EFF98029.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes J2818]
          Length = 220

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +IR+ S  P++ ++        L  FD G DD + KP  +  +L RV  + RR+  S
Sbjct: 63  LTELIRSTSTTPILMMTALSEEDDELKGFDLGADDYIQKPFSYLVLLKRVQVLLRRVNQS 122

Query: 123 NNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G I V ++  +    GE   L ++E  IL  L+ N+ K + +  I S  + 
Sbjct: 123 ETKKQILRCGNISVDTETFEVISAGETIELTKKEFDILVLLIKNQKKVITREMILSQAWD 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F   V+ +++ +H+  LRKKL      + + + R  GY +D
Sbjct: 183 -FAAIVDTSIINTHMKNLRKKLHT----EKIQTIRGAGYKMD 219


>gi|188591029|ref|YP_001795629.1| DNA-binding response regulator creb [Cupriavidus taiwanensis LMG
           19424]
 gi|170937923|emb|CAP62907.1| response regulator, CheY family [Cupriavidus taiwanensis LMG 19424]
          Length = 231

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S  P+I ++        +   + G DD V KP   RE+ ARV AI RR + 
Sbjct: 67  EVCRTLRTFSDAPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126

Query: 122 SNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               A+ G    F+   DG      G    L R E  +L +L+A+ G+  ++ Q+  A++
Sbjct: 127 GGATAKPGEAAGFTHDKDGARLAYHGHWLALTRYEYLLLAWLVAHPGRIYSRAQLMDAVW 186

Query: 179 -GLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220
            G  D    +  V++HI  LR KLR  +  G + + + R +GYS+
Sbjct: 187 AGALD--TSDRTVDTHIKTLRAKLREVSAEGAERIRTHRGMGYSL 229


>gi|168179958|ref|ZP_02614622.1| two-component response regulator [Clostridium botulinum NCTC 2916]
 gi|182669104|gb|EDT81080.1| two-component response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 6/139 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR  S +P+I ++   S    ++  D G DD + KP   RE+++RV AI RR   SN   
Sbjct: 67  IRKTSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRR--TSNDCD 124

Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N  ++  I  + +    E  G+   L + E ++L+Y M N  K ++K QI  +++ +  
Sbjct: 125 FNIIQSKDIFFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIESLWNIDG 184

Query: 183 EAVEENVVESHISKLRKKL 201
           E + EN V  +I ++R+K+
Sbjct: 185 EFINENTVAVNIRRIREKI 203


>gi|15900511|ref|NP_345115.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           TIGR4]
 gi|15902572|ref|NP_358122.1| VncR, response regulator [Streptococcus pneumoniae R6]
 gi|111657296|ref|ZP_01408060.1| hypothetical protein SpneT_02001494 [Streptococcus pneumoniae
           TIGR4]
 gi|116516514|ref|YP_816026.1| DNA-binding response regulator VncR [Streptococcus pneumoniae D39]
 gi|148983983|ref|ZP_01817302.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP3-BS71]
 gi|148988968|ref|ZP_01820368.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992289|ref|ZP_01822012.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP9-BS68]
 gi|149002281|ref|ZP_01827223.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP14-BS69]
 gi|149005712|ref|ZP_01829451.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP18-BS74]
 gi|168482836|ref|ZP_02707788.1| VncR, response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|168488288|ref|ZP_02712487.1| VncR, response regulator [Streptococcus pneumoniae SP195]
 gi|168490511|ref|ZP_02714654.1| VncR, response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|168492763|ref|ZP_02716906.1| VncR, response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|169833674|ref|YP_001694082.1| VncR, response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|182683534|ref|YP_001835281.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           CGSP14]
 gi|221231426|ref|YP_002510578.1| two-component system, response regulator [Streptococcus pneumoniae
           ATCC 700669]
 gi|225854136|ref|YP_002735648.1| VncR, response regulator [Streptococcus pneumoniae JJA]
 gi|225856303|ref|YP_002737814.1| VncR, response regulator [Streptococcus pneumoniae P1031]
 gi|225858438|ref|YP_002739948.1| VncR, response regulator [Streptococcus pneumoniae 70585]
 gi|237650128|ref|ZP_04524380.1| VncR, response regulator [Streptococcus pneumoniae CCRI 1974]
 gi|237821659|ref|ZP_04597504.1| VncR, response regulator [Streptococcus pneumoniae CCRI 1974M2]
 gi|303253928|ref|ZP_07340049.1| two-component system, response regulator [Streptococcus pneumoniae
           BS455]
 gi|303260094|ref|ZP_07346067.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP-BS293]
 gi|303261278|ref|ZP_07347226.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263943|ref|ZP_07349864.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS397]
 gi|303265934|ref|ZP_07351830.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS457]
 gi|303268316|ref|ZP_07354113.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS458]
 gi|4583523|gb|AAD25108.1|AF140356_1 VncR [Streptococcus pneumoniae]
 gi|5830544|emb|CAB54582.1| response regulator [Streptococcus pneumoniae]
 gi|14972078|gb|AAK74755.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           TIGR4]
 gi|15458102|gb|AAK99332.1| VncR, response regulator [Streptococcus pneumoniae R6]
 gi|116077090|gb|ABJ54810.1| DNA-binding response regulator VncR [Streptococcus pneumoniae D39]
 gi|147759596|gb|EDK66587.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP14-BS69]
 gi|147762652|gb|EDK69612.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP18-BS74]
 gi|147924130|gb|EDK75242.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP3-BS71]
 gi|147925465|gb|EDK76542.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928915|gb|EDK79927.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP9-BS68]
 gi|168996176|gb|ACA36788.1| VncR, response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|172043603|gb|EDT51649.1| VncR, response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|182628868|gb|ACB89816.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           CGSP14]
 gi|183572926|gb|EDT93454.1| VncR, response regulator [Streptococcus pneumoniae SP195]
 gi|183574934|gb|EDT95462.1| VncR, response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|183577048|gb|EDT97576.1| VncR, response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|220673886|emb|CAR68392.1| two-component system, response regulator [Streptococcus pneumoniae
           ATCC 700669]
 gi|225720424|gb|ACO16278.1| VncR, response regulator [Streptococcus pneumoniae 70585]
 gi|225723575|gb|ACO19428.1| VncR, response regulator [Streptococcus pneumoniae JJA]
 gi|225725840|gb|ACO21692.1| VncR, response regulator [Streptococcus pneumoniae P1031]
 gi|301799650|emb|CBW32209.1| two-component system, response regulator [Streptococcus pneumoniae
           OXC141]
 gi|301801472|emb|CBW34164.1| two-component system, response regulator [Streptococcus pneumoniae
           INV200]
 gi|302599104|gb|EFL66129.1| two-component system, response regulator [Streptococcus pneumoniae
           BS455]
 gi|302637412|gb|EFL67899.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638789|gb|EFL69251.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP-BS293]
 gi|302642154|gb|EFL72504.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS458]
 gi|302644518|gb|EFL74769.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS457]
 gi|302646348|gb|EFL76574.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS397]
 gi|332074410|gb|EGI84886.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332076436|gb|EGI86899.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332077033|gb|EGI87495.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332202480|gb|EGJ16549.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332203763|gb|EGJ17830.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 218

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 109/225 (48%), Gaps = 18/225 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R    
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118

Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +TG I  + D +         + G+  P+  +E  IL+YL+ N G+ + ++QI  A
Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDA 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   DE   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 224

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 18/216 (8%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L  +GY  L  ++G + LE FN+            +D+S I   ++        L + IR
Sbjct: 21  LENNGYEVLVAENGKIGLEYFNN-----------NKDISIILLDIMLPDISGWSLLKTIR 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNR 125
             S+VP++ I+        L  F+ G DD V KP   +E++ARV AI  R       + +
Sbjct: 70  EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGASEEDGK 129

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++G +D   
Sbjct: 130 TEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG-YDFYG 188

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 189 DLRTVDTHIKQLREKLGEKRKL--IKTVWGIGYKLD 222


>gi|260462544|ref|ZP_05810751.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031740|gb|EEW33009.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 219

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 8/167 (4%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           GKG + L+  R  R  +  P+I ++    L   +   +SG DD + KP H  E+ AR+AA
Sbjct: 57  GKGLEFLKTLR--RKGADTPVIILTARDQLSDRIAGLNSGADDYLVKPFHLGELSARLAA 114

Query: 115 IYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR   + N     G + +    R   V G    L  RE  +LE  +   G  + K QI
Sbjct: 115 VARRYAGNPNPLVRLGLLEIDQAARRVVVNGAEAMLTSREWAVLEQFLRRPGMTIGKNQI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             A+Y  F   +E N VE ++S+LRK    K+G   + + R LGY +
Sbjct: 175 EDALYA-FGAEIESNTVEVYVSRLRK----KIGRGALTTVRGLGYRL 216


>gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 13/168 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R    VP+I +S   +    +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCRALRTRGNVPVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVLRRGQD 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++  +  E GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   I+
Sbjct: 122 VELLPDTLEAGPVRMDVERHVVTVSGTEIRLPLKEFELLEMLLRNTGRVLTRGQLIDRIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221
           G  D   +   ++ H+    K+LR+KL  DP +     + R LGY  +
Sbjct: 182 G-ADYVGDTKTLDVHV----KRLRSKLEKDPSNPAHLVTVRGLGYKFE 224


>gi|313891608|ref|ZP_07825215.1| putative response regulator ArlR [Dialister microaerophilus UPII
           345-E]
 gi|313119886|gb|EFR43071.1| putative response regulator ArlR [Dialister microaerophilus UPII
           345-E]
          Length = 226

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 86/158 (54%), Gaps = 5/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VS 122
           +RA S +P++ IS    ++  +  F+SGVDD + KP   +E++AR+ A+ RR K    V 
Sbjct: 68  VRAVSSLPIVVISADADVERKVQLFESGVDDYLVKPYATKELIARIRALLRRHKEPQIVV 127

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       + ++ +  +  +   V  L ++E  +L +L+ N+ + + + +I   ++G ++
Sbjct: 128 DPSFNIQDLYIYPERHEVRIGENVIELTKKEFDLLLFLVKNKNRVLKRDEIMKKVWG-YE 186

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A + N+V+ +I  +R K+  K G   V + R +GY +
Sbjct: 187 YAGKTNIVDVYIRYIRSKIDEKFGKKYVHTVRGIGYVV 224


>gi|153940791|ref|YP_001390392.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936687|gb|ABS42185.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318479|gb|ADF98856.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 228

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 18/197 (9%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY       G+ S+E F S++ +  +      D+S         GE   E+ RIIR
Sbjct: 21  LEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDIS---------GE---EVCRIIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL   N+ +  
Sbjct: 69  QSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTYNSTSNL 128

Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I+G+ D  
Sbjct: 129 IFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIFGI-DFN 187

Query: 185 VEENVVESHISKLRKKL 201
             +  ++ HI  +RKK+
Sbjct: 188 GYDRTIDVHIKNIRKKI 204


>gi|332187122|ref|ZP_08388862.1| response regulator [Sphingomonas sp. S17]
 gi|332012822|gb|EGI54887.1| response regulator [Sphingomonas sp. S17]
          Length = 235

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R+  A    P++ +S    + + +  F  G DD V KP H  E++AR+ A+ RR K  
Sbjct: 63  LKRLRVARVSTPVLILSGINEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +   TG + V  D +  EV+     L  +E  +LE L   +G  + K    + +YG  
Sbjct: 123 SQSIIRTGKLAVNLDAKTVEVENARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE  E  +++  I KLRKKL
Sbjct: 183 DEP-ELKIIDVFICKLRKKL 201


>gi|226312392|ref|YP_002772286.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095340|dbj|BAH43782.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 2/161 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119
           +EL R IR    VP+I I+    +   +   DSG +D + KP    E+ AR+  + R R 
Sbjct: 70  IELCRRIRETKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRE 129

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N     G +R+  + R   +  E   L  RE  +L Y++ N+ + V++ QI +A++G
Sbjct: 130 SKANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD     N+V+ +I  LR K+ +      + + R +GY++
Sbjct: 190 -FDFMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTL 229


>gi|299534067|ref|ZP_07047419.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298717976|gb|EFI58981.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 209

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 36  EWLQSSAREDVS----AIEAFLIGKGEKVLELPRIIRA----HSQVPLIGISDYPSLQTT 87
           +W+Q  A+ D +      +  L+  G   L+  +++R         P++  +   ++   
Sbjct: 18  DWVQDGAQADTALHGHQYDLVLLDLGLPKLDGLQVLRQLRARKDATPVLVATARDAVHDR 77

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEV 146
           +   D+G DD V KP    E+LAR+ A+ RR     +   E G + +  + R+  V G+ 
Sbjct: 78  IAGLDAGADDYVIKPYDMDELLARIRALTRRAAGHLDAVYEHGGVMLNPNTREASVNGQP 137

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  RE  +L+ L+A  G  +++ QI   +YG  DE V  N VE +I  LRK    KLG
Sbjct: 138 VTLSGREWAVLQALLARPGATLSRQQIEDKLYGWGDE-VSSNAVEVYIHGLRK----KLG 192

Query: 207 FDPVDSKRFLGYSI 220
              V + R LGY +
Sbjct: 193 AAAVLNVRGLGYMV 206


>gi|116332987|ref|YP_794514.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098334|gb|ABJ63483.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 233

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 4/163 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR H ++P+I ++    L   +   D+G DD + KP    E+LAR+  I RR  
Sbjct: 64  MEVLRRIRKHDELPVIMMTARDYLGDKVTGLDNGADDYITKPFEIEELLARIRVIQRRTA 123

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   +T   G + + +  R  +  G+   L +RE  +L +LM + G+   + ++   +
Sbjct: 124 HQSGLDQTYHLGDLTLVTKTRQVDRAGDTIQLTQREYDLLLFLMQHPGQVFTRDELLDNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G+ D   ++NVV+ +I  LR K+          + R +GYS+
Sbjct: 184 WGV-DFLGQQNVVDVYIGYLRNKIDVAAAPHLFHTVRGVGYSL 225


>gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 228

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + IR  SQ+P++ ++     +  +   + G DD + KP   RE+ AR+    RR   
Sbjct: 65  EVCQRIRQTSQIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIETTLRRIRG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L +  +R + G I +  DGR   +  E   L RRE  +L +L+ N+G+  ++ Q++  ++
Sbjct: 125 LSLKRSRIQFGDIEIDQDGRQVYIHQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
                +     V++HI  LR KL+ 
Sbjct: 185 ESHSTSGSLRTVDTHIKTLRLKLKG 209


>gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 227

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 7/191 (3%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           E LQS+  ED   I   L+      LE+ R +R   + P+I I+   S+   +   D G 
Sbjct: 36  EGLQSALEEDWDVILLDLMLPKLNGLEVCRRLRQEKETPVIMITARDSIMDRVSGLDHGA 95

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPL 149
           DD + KP    E+LAR+ AI+RR++ +  +        F D       R  +  G+   L
Sbjct: 96  DDYIVKPFAIEELLARLRAIFRRMEYAEPKKAALTTYKFRDLVLEKESRLVKKAGKTIEL 155

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            +RE  +L  L+ N+   + +  + + ++G ++  VE NVV+ +I  LR K+  +     
Sbjct: 156 TKREYDLLLTLLENKNIVMTREALLNKVWG-YETEVETNVVDVYIRYLRNKIDTEGEDSY 214

Query: 210 VDSKRFLGYSI 220
           + + R  GY +
Sbjct: 215 IQTVRGTGYVM 225


>gi|228474789|ref|ZP_04059520.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|314935741|ref|ZP_07843093.1| DNA-binding response regulator [Staphylococcus hominis subsp.
           hominis C80]
 gi|228271452|gb|EEK12820.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|313656306|gb|EFS20046.1| DNA-binding response regulator [Staphylococcus hominis subsp.
           hominis C80]
          Length = 224

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 4/180 (2%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           R D++ ++  + G      EL ++++   Q+P+I ++   +L      F SG DD V KP
Sbjct: 45  RVDIAVVDIMMTGMDG--FELCQLLKDRYQLPVIMLTARDALSDKERAFVSGTDDYVTKP 102

Query: 103 IHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
              +E+L R+ A+ RR ++ + N+ E G + +  +  +  V  +   LP +E ++L  L 
Sbjct: 103 FEIKELLFRIRAVLRRYQINTQNKIEIGNVILNDEFMEVSVASKKMNLPTKEFQLLFLLC 162

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  +   +  I   I+G FD   +E  V+ HI +LR +L+       + + R  GY ++
Sbjct: 163 THPRQIYTRESIIEKIWG-FDYTGDERTVDVHIKRLRTRLKKLEATIEIQTVRGQGYKVN 221


>gi|225631101|ref|ZP_03787828.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591203|gb|EEH12358.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 256

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  +VP++ +S   ++         G DD + KP H  E+LAR+ AI RR K  
Sbjct: 67  LLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIVRRTKGH 126

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  + G I +  D R  EV+G+   L  +E  ++E L   +G  + K    + +Y   
Sbjct: 127 PESVIKIGNININFDHRIVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLNHLYNGL 186

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE     +V+  + KLRKKL
Sbjct: 187 DEPSNNKIVDVFMCKLRKKL 206


>gi|222150338|ref|YP_002559491.1| hypothetical protein MCCL_0088 [Macrococcus caseolyticus JCSC5402]
 gi|222119460|dbj|BAH16795.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 223

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 15/205 (7%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIE--------AFLIGKGEKVLELPRIIRAHSQVPLIGI 78
           EGF    F+ ++ S+  E ++ ++          ++  G    +L   I+   Q+P+I +
Sbjct: 20  EGFLRHSFQVYVASNGDEAINLLDNESIDLCIVDIMMPGIDGFQLCEQIKQDYQLPVIML 79

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138
           +   +L      F +G DD V KP    E++ R  AI +R + +  + E G + + +D  
Sbjct: 80  TARDALGDKRIAFQAGSDDYVTKPFEIEEVIFRAQAILKRYEKAVEKVEFGKLIIDADSY 139

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
           +  ++ E   LPR+E  +L YL+ +  K   + Q+   I+G +D   +E  V+ H+ ++R
Sbjct: 140 EVTMEDESLYLPRKEFELLYYLVRHYPKVATREQLIEEIWG-YDFDGDERTVDVHVKRIR 198

Query: 199 KKLRNKLGFDP---VDSKRFLGYSI 220
           K+L     FD    + + R +GY +
Sbjct: 199 KRLD---AFDSGVEIQTVRGVGYKV 220


>gi|83746136|ref|ZP_00943190.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|207722061|ref|YP_002252499.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|207741825|ref|YP_002258217.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|83727102|gb|EAP74226.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|206587235|emb|CAQ17819.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206593209|emb|CAQ60136.1| response regulator protein [Ralstonia solanacearum IPO1609]
          Length = 224

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETG 129
           S VP++ ++    +   +    +G DD + KP   RE++AR+  + RR   +N    + G
Sbjct: 71  SAVPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNTPANAVELQCG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +   +  R   + G    LP RE  +LE LM   G+ V+K  + + ++GL D+A  E  
Sbjct: 131 DLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFGLEDDASPE-A 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +E +I +LRKKL +      + + R LGY
Sbjct: 190 IEIYIHRLRKKLEHSAA--TIVTLRGLGY 216


>gi|331088816|ref|ZP_08337726.1| hypothetical protein HMPREF1025_01309 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330407339|gb|EGG86842.1| hypothetical protein HMPREF1025_01309 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 226

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +R    +  ++ +S    +   ++  D+G +D + KP H +E+ ARV ++ RR 
Sbjct: 60  MEILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRRK 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N   E   IR     R    +     L R+E  ILEYL+ N+G+ V++ ++   ++
Sbjct: 120 FIQKNVCLECNGIRFDIRERVAYAEENPVALTRKENGILEYLLLNQGRPVSQEELIEHVW 179

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D +V+     +  H+S LR+KL+  LG+DP+ ++   GY I
Sbjct: 180 ---DSSVDSFSGSIRVHMSSLRRKLKAGLGYDPIVNRIGEGYKI 220


>gi|126702213|gb|ABO26810.1| PmrA [Tatlockia micdadei]
          Length = 222

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +  P+I ++   +++  +   DSG DD + KP    E+ ARV A+ RR   S  RA++  
Sbjct: 71  NTTPVIILTARETVEDRIKGLDSGADDYMTKPFDLNELSARVRALVRR---SQGRADS-V 126

Query: 131 IRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           ++  +   DP      V   +  +PRRE  +L+ L+ N G+ +++ Q+  +IYG +DE V
Sbjct: 127 LQYRNVTLDPAAHSVYVDDVMINVPRREFALLQKLLENSGQVLSREQLMQSIYG-WDEDV 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + N +E HI  LRKKL        + + R +GY  + N
Sbjct: 186 DSNALEVHIHNLRKKLNANF----IRTIRGVGYMAEKN 219


>gi|293365004|ref|ZP_06611721.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|306829124|ref|ZP_07462314.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|307703252|ref|ZP_07640198.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291316454|gb|EFE56890.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|304428210|gb|EFM31300.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|307623327|gb|EFO02318.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 218

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 106/219 (48%), Gaps = 6/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + EE L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGISDYLTDCG--YETIQAADGEEALEQFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   +
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                    +V  +     + GE   +  +E  IL+YL+ N G+ + ++QI  A++ + D
Sbjct: 122 GRIFSYKNTKVDFESYSASLAGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKVTD 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|126726434|ref|ZP_01742275.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium
           HTCC2150]
 gi|126704297|gb|EBA03389.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium
           HTCC2150]
          Length = 237

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+  A  + P++ +S     +  +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRL--AKVETPILILSGSDDTENKIKGFGFGADDYMTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG I V  D +  E   +   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSIIHTGGIAVNLDAKTVEAHNKPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|328542574|ref|YP_004302683.1| Two-component transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326412320|gb|ADZ69383.1| Two-component transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 228

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ +   + P++ +S    ++  +     G DD + KP H  E++AR+ AI 
Sbjct: 57  GYEVLRTLRVSKV--KTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIV 114

Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +   TG +RV  D +  EV G+   L  +E ++LE L   +G  + K    +
Sbjct: 115 RRSKGHAQSVIVTGDLRVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 174

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 175 HLYGGMDEP-ELKIIDVFICKLRKKL 199


>gi|228995903|ref|ZP_04155561.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003520|ref|ZP_04161338.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757758|gb|EEM06985.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763875|gb|EEM12764.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 223

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 5/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + RI     + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR    
Sbjct: 62  IQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRSGNL 121

Query: 123 NNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       I +F   +D +V GE   L  ++  +LEYL+ N GK + + QIF  ++G 
Sbjct: 122 TTKQTINYRGIELFGKDKDIQVDGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           FD      +VE ++  LRKKL    G+   + + R +GY +
Sbjct: 181 FDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYML 220


>gi|323439955|gb|EGA97670.1| two-component response regulator [Staphylococcus aureus O11]
          Length = 224

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L    R D++ ++  +   G    +L   ++    +P+I ++   +L      F SG DD
Sbjct: 40  LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156
            V KP   +E++ R+ A+ RR  +++N   T G + +     + +V  +   LP +E ++
Sbjct: 98  YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157

Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           L +++A R K++  + QI   I+G +D   +E  V+ HI +LR++L+       +++ R 
Sbjct: 158 L-FMLATRPKQIFTREQIIEKIWG-YDYGGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215

Query: 216 LGYSID 221
            GY ++
Sbjct: 216 QGYKVE 221


>gi|225860601|ref|YP_002742110.1| VncR, response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230065|ref|ZP_06963746.1| VncR, response regulator [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255464|ref|ZP_06979050.1| VncR, response regulator [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502394|ref|YP_003724334.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|225728327|gb|ACO24178.1| VncR, response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237989|gb|ADI69120.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|327390338|gb|EGE88679.1| response regulator [Streptococcus pneumoniae GA04375]
          Length = 218

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 109/225 (48%), Gaps = 18/225 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R    
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118

Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +TG I  + D +         + G+  P+  +E  IL+YL+ N G+ + ++QI  A
Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDA 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   DE   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCIFTVRNVGYKLE 216


>gi|264680102|ref|YP_003280011.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262210617|gb|ACY34715.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 209

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 36  EWLQSSAREDVS----AIEAFLIGKGEKVLELPRIIRA----HSQVPLIGISDYPSLQTT 87
           +W+Q  A+ D +      +  L+  G   L+  +++R         P++  +   ++   
Sbjct: 18  DWVQDGAQADTALYGHQYDLVLLDLGLPKLDGLQVLRQLRARKDATPVLVATARDAVHDR 77

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEV 146
           +   D+G DD V KP    E+LAR+ A+ RR     +   E G + +  + R+  V G+ 
Sbjct: 78  IAGLDAGADDYVIKPYDMDELLARIRALTRRAAGHLDAVYEHGGVMLNPNTREASVNGQP 137

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  RE  +L+ L+A  G  +++ QI   +YG  DE V  N VE +I  LRK    KLG
Sbjct: 138 VTLSGREWAVLQALLARPGATLSRQQIEDKLYGWGDE-VSSNAVEVYIHGLRK----KLG 192

Query: 207 FDPVDSKRFLGYSI 220
              V + R LGY +
Sbjct: 193 AAAVLNVRGLGYMV 206


>gi|163854400|ref|YP_001628698.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163258128|emb|CAP40427.1| two-component response regulator [Bordetella petrii]
          Length = 220

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 12/185 (6%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           DV A +A ++  G  VL+   ++R    A   +P++ ++   S    +   D+G DD + 
Sbjct: 41  DVEAFDAVVLDLGLPVLDGLTVLRRWRAAGRNMPVLILTARDSWHEKVAGIDAGADDYLA 100

Query: 101 KPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
           KP H  E+LARV A+ RR  V ++     GP+ + +      + G    L   E ++L  
Sbjct: 101 KPFHMEELLARVRALIRRNSVHASAEWRCGPLMLDTRQARVTLDGAPITLTSHEFKVLAM 160

Query: 160 LMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           LM + G+ V++ Q+   +Y   FD   + N ++  I +LRKKL      D +++ R LGY
Sbjct: 161 LMQHAGEVVSRQQLVEHLYAQDFDR--DSNTIDVFIGRLRKKLPP----DTIETVRGLGY 214

Query: 219 SIDWN 223
            +  N
Sbjct: 215 RLAGN 219


>gi|154502659|ref|ZP_02039719.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149]
 gi|153796542|gb|EDN78962.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149]
          Length = 246

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +R    +  ++ +S    +   ++  D+G +D + KP H +E+ ARV ++ RR 
Sbjct: 80  MEILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRRK 139

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N   E   IR     R    +     L R+E  ILEYL+ N+G+ V++ ++   ++
Sbjct: 140 FIQKNVCLECNGIRFDIRERVAYAEENPVALTRKENGILEYLLLNQGRPVSQEELIEHVW 199

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D +V+     +  H+S LR+KL+  LG+DP+ ++   GY I
Sbjct: 200 ---DSSVDSFSGSIRVHMSSLRRKLKAGLGYDPIVNRIGEGYKI 240


>gi|163850257|ref|YP_001638300.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218528815|ref|YP_002419631.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240137328|ref|YP_002961797.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA)
           [Methylobacterium extorquens AM1]
 gi|254559507|ref|YP_003066602.1| cell cycle transcriptional regulator ctrA [Methylobacterium
           extorquens DM4]
 gi|163661862|gb|ABY29229.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218521118|gb|ACK81703.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240007294|gb|ACS38520.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA)
           [Methylobacterium extorquens AM1]
 gi|254266785|emb|CAX22584.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA)
           [Methylobacterium extorquens DM4]
          Length = 233

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G    L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
             DE  E  +++  I KLRKKL N
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203


>gi|218509328|ref|ZP_03507206.1| putative two-component response regulator protein [Rhizobium etli
           Brasil 5]
          Length = 218

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 78/151 (51%), Gaps = 2/151 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-E 127
           A +Q P++ ++   ++   +   D+G DD + KP H+ E+ AR+ A+ RR  V++    E
Sbjct: 69  AGAQTPVLVLTARGAIDERIAGLDAGADDYLAKPFHNGELTARIRALIRRSPVTSMPILE 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              +++    R     G    L   E+ +LE LM N GK VAK++I  A +  F +    
Sbjct: 129 FAALKLDVASRQVTCAGHDVALAPSEKGLLELLMRNGGKVVAKSKIEHA-FSEFGDERSS 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           N VE  +S+LRKKL        +++ R +GY
Sbjct: 188 NAVELAVSRLRKKLEGHKTRLSIETIRGVGY 218


>gi|15890951|ref|NP_356623.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15159265|gb|AAK89408.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 217

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE +  L  + +     P+I ++ +  +   +   ++G DD V KP    E+ AR+ A+ 
Sbjct: 57  GEGITLLQSLRKRDDATPVIILTAHDQVSDRIAGLNAGADDYVVKPFDLNELSARMLAVS 116

Query: 117 RRLKVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR +  +      P I +    R+  V G    L  RE  +LE L+ + G  V+K Q+  
Sbjct: 117 RRYEGRSAPVIRLPGIEINQVARNITVDGTAQTLSAREWAVLEKLVEHPGAVVSKAQLHD 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  F   +E N VE +IS+LRK    K+G D V++ R +GY+I
Sbjct: 177 TLYE-FGAEIESNTVEVYISRLRK----KIGHDRVETVRGVGYTI 216


>gi|134291387|ref|YP_001115156.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134576|gb|ABO58901.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 241

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 22/212 (10%)

Query: 22  DGVSLEGFN-----SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLI 76
           DG++ EGF      +L+      +S   D+  ++   +  G  V  +  + R    VP++
Sbjct: 18  DGLAKEGFAVDWCATLDLATRAFASTPYDLVLLD-LGMPDGNGVTFVKALRRGGHTVPVL 76

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAET 128
            I+   SL   +   DSG DD + KP   RE+ AR  A+ RR        L V+N   +T
Sbjct: 77  IITARSSLDDRVIGLDSGGDDYLVKPFELRELTARCRALLRRPGACLGTTLAVANLELDT 136

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
                   GR+  V G V P+P RE  +LE LM   G  V K  +  ++Y L  E V  N
Sbjct: 137 A-------GREVRVAGRVVPVPPRELGLLECLMRRVGHVVTKGALEDSLYALEAE-VTPN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E+ +S+LR++L        + +   +GY +
Sbjct: 189 ALEAVVSRLRRRLAAAHAQVALHTAHGIGYML 220


>gi|288818001|ref|YP_003432348.1| two-component response regulator [Hydrogenobacter thermophilus
           TK-6]
 gi|288787400|dbj|BAI69147.1| two-component response regulator [Hydrogenobacter thermophilus
           TK-6]
          Length = 216

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I +   + P++ ++    L      F +G DD + KP   +E+L R+ A+YRR    
Sbjct: 63  LLKIRQGDKKTPVLVLTAKSRLDDKEKCFLAGADDYITKPFEPKELLLRLKALYRRKLGG 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     G + V  +     V G+V  L R++  IL+ L+ NRG+ V+  +I + ++G  D
Sbjct: 123 NVIVNLGGVEVDLERELVSVDGKVINLTRKDWLILKCLVENRGRFVSSEEILNYVWG--D 180

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V + VV +HI  LRK L    GF  + + +  GY I+
Sbjct: 181 APVGDEVVRAHIKNLRKLLPE--GF--ITTMKGRGYKIE 215


>gi|328544198|ref|YP_004304307.1| Two component transcriptional regulator, winged helix family
           [polymorphum gilvum SL003B-26A1]
 gi|326413941|gb|ADZ71004.1| Two component transcriptional regulator, winged helix family
           [Polymorphum gilvum SL003B-26A1]
          Length = 219

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 7/156 (4%)

Query: 67  IRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +RA   V P++ ++    +   ++  ++G DD + KP    E+ AR+ ++ RR   + N 
Sbjct: 66  LRARGDVTPVMILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYSGNPNP 125

Query: 126 AET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             T GP+ +    R     G+   L  RE  + E  ++  G+ ++KTQ+   +Y  FD  
Sbjct: 126 IVTHGPLEIDLAARSIRRDGKPVQLTAREWALFEAFVSRPGQLLSKTQLEEKLYA-FDAE 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           VE N +E H+S+LRK    KLG   ++++R LGY +
Sbjct: 185 VESNTIEVHVSRLRK----KLGPQVIETERGLGYRL 216


>gi|90417639|ref|ZP_01225551.1| two-component response regulator, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337311|gb|EAS50962.1| two-component response regulator, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 225

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + R +R+  +  P+I ++    L   ++  ++G DD + KP    E++AR+ A+ RR 
Sbjct: 60  LSIVRALRSSGRDTPVIFLTSVSGLDDRVEGLEAGADDYLVKPFAFSELMARLNALARRS 119

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +    A  + G + +    R    +G+   L  RE R+LEY+M NRG+ + +T +   +
Sbjct: 120 PMRREEAVLKVGDLEMNLIARTVRREGQSVDLQPREFRLLEYMMRNRGRVLTRTMLLERV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   FD     NVVE+H+S+LR K+      + + + R  GY ++
Sbjct: 180 WDFHFDP--RTNVVETHVSRLRGKVDRPFSTEMIKTIRGSGYVLN 222


>gi|308751601|gb|ADO45084.1| two component transcriptional regulator, winged helix family
           [Hydrogenobacter thermophilus TK-6]
          Length = 224

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I +   + P++ ++    L      F +G DD + KP   +E+L R+ A+YRR    
Sbjct: 71  LLKIRQGDKKTPVLVLTAKSRLDDKEKCFLAGADDYITKPFEPKELLLRLKALYRRKLGG 130

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     G + V  +     V G+V  L R++  IL+ L+ NRG+ V+  +I + ++G  D
Sbjct: 131 NVIVNLGGVEVDLERELVSVDGKVINLTRKDWLILKCLVENRGRFVSSEEILNYVWG--D 188

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V + VV +HI  LRK L    GF  + + +  GY I+
Sbjct: 189 APVGDEVVRAHIKNLRKLLPE--GF--ITTMKGRGYKIE 223


>gi|229056343|ref|ZP_04195761.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228721011|gb|EEL72553.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 7/151 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET 128
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR   L         
Sbjct: 76  ETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSGSLTTKQTICYK 135

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      
Sbjct: 136 G-IELFGKDKDAQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVA 193

Query: 189 VVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +VE ++  LRKKL    G+   + + R +GY
Sbjct: 194 IVEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223


>gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 224

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 18/216 (8%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L  +GY  L  ++G + LE FN+            +D+S I   ++        L + IR
Sbjct: 21  LENNGYEVLVAENGKIGLEYFNN-----------NKDISIILLDIMLPDISGWSLLKTIR 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NR 125
             S+VP++ I+        L  F+ G DD V KP   +E++ARV AI  R   ++    +
Sbjct: 70  EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGASEEEGK 129

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++G +D   
Sbjct: 130 TEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG-YDFYG 188

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 189 DLRTVDTHIKQLREKLGEKRKL--IKTVWGIGYKLD 222


>gi|329847724|ref|ZP_08262752.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
 gi|328842787|gb|EGF92356.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
          Length = 229

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +R+ S    +P++ ++        +   D+G DD V KP    E LAR+ A+ R
Sbjct: 62  IEVCRRLRSASPTRNLPIVMLTARSEESDRIRGLDTGADDYVVKPFSMVEFLARIRAVLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++  +S+++ E G I V       +  G    L   E ++L++ M    +  ++ Q+  
Sbjct: 122 RIRPGLSDDKVEFGEISVDRLSHRVQRCGRDIHLGPTEYKLLDHFMQYPKRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++G  D  VE   V+ HI +LRK L     +DP+ + R  GYS+D
Sbjct: 182 AVWG-NDVYVEARTVDVHIGRLRKALNKGDEYDPIRTVRSAGYSLD 226


>gi|320540374|ref|ZP_08040024.1| putative DNA-binding response regulator in two-component regulatory
           system with PhoQ [Serratia symbiotica str. Tucson]
 gi|320029305|gb|EFW11334.1| putative DNA-binding response regulator in two-component regulatory
           system with PhoQ [Serratia symbiotica str. Tucson]
          Length = 223

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 6/191 (3%)

Query: 33  EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFF 91
           E + +LQ  A  D++ ++  L+  GE  L L R  RAH  ++P++G++   S Q  +   
Sbjct: 35  EADYFLQEHA-PDIAIVD--LVLPGEDGLSLIRRWRAHQMKLPILGLTARESWQDKVAVL 91

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           ++G DD V KP H  E++AR+ A+ RR   +++      P ++    R+  V  +   L 
Sbjct: 92  EAGADDYVTKPFHLEEVIARIQALMRRNSGLASQIIVLPPFQIDLSRRELSVNEQNIKLT 151

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
             E  I+E L+ N GK V+K  +   +Y    E  E + ++  + +LRKK++ +   D +
Sbjct: 152 AFEYTIIETLIRNAGKVVSKDSLMLQLYP-DAELRESHTIDVLMGRLRKKVQAEYPQDVI 210

Query: 211 DSKRFLGYSID 221
            + R  GY  D
Sbjct: 211 TTVRGQGYRFD 221


>gi|296134131|ref|YP_003641378.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032709|gb|ADG83477.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 224

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 7/158 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP+I ++        L  FD G D+ + KP   + + AR+ A+ RR  V 
Sbjct: 66  VCREIRKSSQVPIIMLTARGEESDELFGFDLGADEYIAKPFSLKILAARIQALLRR--VQ 123

Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           NNR       + +   GR   V GE   L  +E  +L YL  N G+ +++ QI +A++  
Sbjct: 124 NNRTVRSFDGLEIDEQGRYVYVDGEPVDLSPKEFELLLYLTENAGRALSREQILNAVWD- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +D   +   V++HI KLR KL  K     + + R LGY
Sbjct: 183 YDYFGDVRTVDTHIKKLRLKLGEKSYL--IQTVRGLGY 218


>gi|332204624|gb|EGJ18689.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 218

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 18/225 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L   +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALDQFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R    
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118

Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +TG I  + D +         + G+  P+  +E  IL+YL+ N G+ + ++QI  A
Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASIAGQEVPINAKELEILDYLVKNEGRALTRSQIIDA 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   DE   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|311029174|ref|ZP_07707264.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 225

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 8/210 (3%)

Query: 16  IALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +A F +  +  EGFN   S +  E L  + +ED   I   L+  G   +E+ R IRA  +
Sbjct: 13  LARFIELELQYEGFNVATSYDGREGLDLALKEDWDIILLDLMLPGLSGMEVCRRIRAAKE 72

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
            P+I ++   S+   +   DSG DD ++KP    E+LAR+ A++RR++     A      
Sbjct: 73  TPIIMLTARDSVMDKVSGLDSGADDYMSKPFAIEELLARIRALFRRMEGKKEEAHNILSF 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             ++V  D R      E   L +RE  +L   M N  + + +  +   ++ L   A E N
Sbjct: 133 RELKVDLDARTVTRMEEQIELTKREFDLLVVFMTNINRVLTRELLLDKVWELGSYA-ETN 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VV+ ++  LR K+        + + R  GY
Sbjct: 192 VVDVYVRYLRNKIDKPSEESYIQTVRGTGY 221


>gi|169824596|ref|YP_001692207.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302380339|ref|ZP_07268809.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303235188|ref|ZP_07321807.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|167831401|dbj|BAG08317.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302311829|gb|EFK93840.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302493675|gb|EFL53462.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 229

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 21/233 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KG 57
           + V+ D++ +VK   I L  D+   L+ +N  +  E ++ +       I+ FL+    +G
Sbjct: 4   IMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGFDALELMEKNK------IDLFLVDIMMEG 57

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              LEL + IR  S  P+I +S    L   +   + G DD + KP    E+LAR+ +  R
Sbjct: 58  MDGLELTQKIREVSNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLR 117

Query: 118 RLKVSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RL++S +++  G   +FS GR        +  + GE   L   E  I+  L+ N+G    
Sbjct: 118 RLELSKDKSLNG--NIFSAGRLTINDDKKEVLIDGEEIKLTPYEYGIILLLLKNKGIVFT 175

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             +I+  ++      V++ +V  HIS+LR+K+  N    D + S   +GY I+
Sbjct: 176 SEEIYENVWEAPPYDVKK-IVSVHISRLREKVEINPRRPDLIKSVYGMGYKIE 227


>gi|89096575|ref|ZP_01169467.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088590|gb|EAR67699.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 226

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R IR  S VP+I ++        +  FD G DD V KP   R +LARV A++RR +
Sbjct: 61  LETCRKIREFSNVPIIMLTARTDNLDMIKGFDCGADDYVTKPFDERVLLARVNALFRRQQ 120

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + +   E   G  ++  D    + +G+   L  +E  +LE LM +  +   + Q+ +  +
Sbjct: 121 IQHGAKEVIRGDFKLDMDSYTLKYKGKAVSLTLKEFLLLETLMKHPERVYTRDQLLAVAW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLR 202
            + + + E   V+SH+  LR+KL+
Sbjct: 181 DI-NASTEIRTVDSHVRNLREKLK 203


>gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 227

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 85/163 (52%), Gaps = 4/163 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R +S+VP+I ++    +   +   D G DD + KP    E+LAR+   ++  +
Sbjct: 63  MEVLRRLRQNSEVPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIRVTFKHKR 122

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V+ +++   E G +++           EV  L + E  +L+YLM N+   +++  I   +
Sbjct: 123 VTPDKSGIIEIGKLKLNVSKYLTTYDDEVVELTKTEFDLLKYLMVNKNIVLSRENILEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + NVV+ +I  LR K+ ++     + + R +GY +
Sbjct: 183 WG-YDYTGDTNVVDVYIRYLRSKIDDRFNHKFIYTVRGVGYQL 224


>gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
 gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
          Length = 223

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 32/212 (15%)

Query: 34  FEEWLQSSAREDVSA---IEAFLIGKGEK----VLE--LPRI--------IRAHSQVPLI 76
            + +LQ +  E   A   +EA  +  GE+    VL+  LP+I        IR  S VP+I
Sbjct: 17  LQNFLQEAGYEVAVANDGVEALSLFAGERYDLIVLDIMLPKIDGYGVCELIRKQSDVPII 76

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-------G 129
            ++     +  +   D  VDD + KP     +L ++AA+ RR   SN   +        G
Sbjct: 77  MLTALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKIAAVLRR---SNRETDEKYQIITYG 133

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +  D     V G  F L ++E  IL  L+ ++G+ + +  +   ++  +D   +E V
Sbjct: 134 NLLLNCDSYTATVDGANFELTQKEFEILRELLTHQGRILTRQNLLDKLWR-YDFYGDERV 192

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           V++HI  LRK    KLG D + + R +GY +D
Sbjct: 193 VDTHIKNLRK----KLGIDFIQTIRGVGYKVD 220


>gi|222475446|ref|YP_002563863.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Florida]
 gi|222419584|gb|ACM49607.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Florida]
          Length = 292

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
           +VP++ +S   S+   +     G DD + KP H  E+LAR+ AI RR +    +    G 
Sbjct: 77  KVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVRRTRGHPESIVRVGN 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +  D +  E  GE+  L ++E  ++E L +  G  + K    S +Y   DE  ++ ++
Sbjct: 137 ISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 196

Query: 191 ESHISKLRKKLR 202
           +  + KLRKKL+
Sbjct: 197 DVFMCKLRKKLK 208


>gi|188580015|ref|YP_001923460.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179343513|gb|ACB78925.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 233

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G    L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
             DE  E  +++  I KLRKKL N
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203


>gi|313107372|ref|ZP_07793563.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310880065|gb|EFQ38659.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 226

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  L+  G +A     G++++   S    + L   AR DV  ++  L  + + + 
Sbjct: 3   VLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDE-DGLR 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L R+ +    +P++ ++   ++   +    +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLQRLRQQGVDLPVLVLTARDAVTDRVAGLQTGADDYLLKPFDLRELGARLHTLQRRSAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  E G +      R+  + G    L RRE+ +L+ L+ NRG+ ++  Q+  ++YG 
Sbjct: 122 RCVNVIEHGRLSYDPSTRETWLDGRPVELSRREQALLQALLNNRGRILSGEQLKDSVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL N +    V + R LGY +
Sbjct: 182 GDE-VESNALNVHIHHLRRKLGNAI----VQTVRGLGYRL 216


>gi|268608799|ref|ZP_06142526.1| DNA-binding response regulator [Ruminococcus flavefaciens FD-1]
          Length = 225

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 3/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           +R  S  P+I IS    ++T L+    G DD + KP    E++ R+  + RR++ +  + 
Sbjct: 68  LRKISDTPVIVISAKSMMETKLEVLRLGADDYIIKPFDINEVIVRIEVVLRRVQTTKEKD 127

Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E+G +++       E +G+   L  +E  +LE  M N  K   K +++ +++      
Sbjct: 128 VLESGGLKLILTENRAEYEGKPVQLTAKEMSLLELFMKNPKKTYTKAELYESVWNDV-YY 186

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E+N +  H+S LR KL+   G + +++   +GY +
Sbjct: 187 YEDNTINVHVSNLRNKLKKVSGREHIETVWGIGYRL 222


>gi|312141110|ref|YP_004008446.1| two component system response regulator [Rhodococcus equi 103S]
 gi|311890449|emb|CBH49767.1| two component system response regulator [Rhodococcus equi 103S]
          Length = 226

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 21/169 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   ++N A
Sbjct: 64  LRAKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR--GADNEA 121

Query: 127 ET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            T         GP+R+  +     V G+   LP +E  +LEYL+ N G+ + + Q+   +
Sbjct: 122 ATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
           +G  D   +   ++ H+ +LR K+      DP   K     R LGY ++
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEG----DPGKPKHLVTVRGLGYKLE 225


>gi|291550471|emb|CBL26733.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 108/214 (50%), Gaps = 22/214 (10%)

Query: 2   FVLIDD----RALVKD-----GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            +++DD    R LVKD     GY+ L   DG  +E  + L +E+       +D++ I   
Sbjct: 6   ILVVDDESRMRKLVKDFLTREGYMVLEAGDG--MEAMD-LFYED-------KDIALIILD 55

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           ++       ++ R +R  S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV
Sbjct: 56  VMMPKMDGWQVCREVRETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARV 115

Query: 113 AAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            AI RR    V N+  E G I +       ++ G    L  +E  +L Y + N+G  +++
Sbjct: 116 NAILRRTLGAVGNDSLEAGGITIDKSAHIVKIDGTPVELSYKEFELLTYFIENQGIALSR 175

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
            +I + ++  +D   +   +++H+ KLR KL +K
Sbjct: 176 EKILNNVWN-YDYFGDARTIDTHVKKLRSKLGDK 208


>gi|302875105|ref|YP_003843738.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690270|ref|ZP_07632716.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577962|gb|ADL51974.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 224

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 3/151 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127
           +   +P++ I+   S +     F  G DD + KPI+  E++ RVAA+ RR K VS ++ +
Sbjct: 70  SQYNMPILMITARESYEDKEKGFLFGADDYMVKPINLNEMVLRVAALLRRSKIVSEHKLQ 129

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G I +  D      +  V+ LP++E  +L  L++   K   + Q+   I+G+ D  ++E
Sbjct: 130 IGDIVLNYDTLSITTKDTVYELPKKEFYLLFKLLSYPKKIFTRQQLMDEIWGM-DVDIDE 188

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             V+SHI KLRKK  +   F  + + R LGY
Sbjct: 189 RTVDSHIKKLRKKFEHIDEFKII-TIRGLGY 218


>gi|16520025|ref|NP_444145.1| transcription regulator of late flavonoid-inducible functions TtsI
           [Sinorhizobium fredii NGR234]
 gi|2500753|sp|P55701|Y4XI_RHISN RecName: Full=Probable transcriptional regulatory protein y4xI
 gi|2182717|gb|AAB91932.1| transcription regulator of late flavonoid-inducible functions TtsI
           [Sinorhizobium fredii NGR234]
          Length = 226

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 7/208 (3%)

Query: 19  FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHS-QVPLI 76
            GD G +++   +LE       SA  ++  +E  L  G G   L+  R +R+    VP +
Sbjct: 18  LGDGGFAVDVVGTLEQASSAFFSASYEILLLELVLPDGDG---LDWLRQLRSDGYSVPAV 74

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFS 135
            +S    L+  +  F+SG DD + KP+   E++AR+ A+ RR  +++    E G +    
Sbjct: 75  IMSRLDDLEKRISVFNSGADDFLRKPVSTDELIARMRALLRRSTQITCPIIEFGNLHFDP 134

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
            GR   V G    + RRE  ILE+L+   G+ V + ++   +Y  F++ V  N +E+ I 
Sbjct: 135 IGRQVSVDGHPLMIARRELCILEHLLNRAGRIVPRARLEDQLYS-FNDEVSGNALEAGIY 193

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +LR  L        + + R +GY+++  
Sbjct: 194 RLRGYLSRSGATLRIRTVRGIGYTLELT 221


>gi|88854568|ref|ZP_01129235.1| two component transcriptional regulator, winged helix family
           protein [marine actinobacterium PHSC20C1]
 gi|88816376|gb|EAR26231.1| two component transcriptional regulator, winged helix family
           protein [marine actinobacterium PHSC20C1]
          Length = 241

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 2/160 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI    + VP++ ++    ++T ++  D+G DD + KP H  E+LARV A+ RR   +  
Sbjct: 73  RIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARVRALLRRSPQAQA 132

Query: 125 RAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              T   + + +  R  E  G    L  +E  +LEYLM N G+ V+ T++    +    E
Sbjct: 133 PVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSSTELIDHAWDSNYE 192

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
               NVV+++I  LR+KL      D ++++R  GY I+ +
Sbjct: 193 GF-SNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIEQS 231


>gi|254995251|ref|ZP_05277441.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Mississippi]
 gi|255003432|ref|ZP_05278396.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004551|ref|ZP_05279352.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Virginia]
          Length = 292

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
           +VP++ +S   S+   +     G DD + KP H  E+LAR+ AI RR +    +    G 
Sbjct: 77  KVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVRRTRGHPESIVRVGN 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +  D +  E  GE+  L ++E  ++E L +  G  + K    S +Y   DE  ++ ++
Sbjct: 137 ISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 196

Query: 191 ESHISKLRKKLR 202
           +  + KLRKKL+
Sbjct: 197 DVFMCKLRKKLK 208


>gi|254787196|ref|YP_003074625.1| BaeR family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237684514|gb|ACR11778.1| transcriptional regulatory protein BaeR [Teredinibacter turnerae
           T7901]
          Length = 232

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 17/216 (7%)

Query: 16  IALFGDDGVSLEGF------NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           +AL   D +   GF      N LE E WL S+   D+  ++  L GK    L++ R +R 
Sbjct: 14  LALLMRDYLLAAGFHCEIIGNGLEVERWL-STNTADIILLDLMLPGKNG--LDICRELRT 70

Query: 70  HSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
            +Q   +P+I ++        L   + G DD V KP   REI+ARV A+ RR++    + 
Sbjct: 71  QAQFKTLPIIMVTAKVEEIDRLLGLELGADDYVCKPFSPREIVARVKAVLRRVQQPQEQL 130

Query: 127 E---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +   +  +++  + +   + G +  L   E  + + L   +G+  ++  I   IY  +  
Sbjct: 131 QDSASQAVQLHENSQQVSISGSMIELTTIEFCLFKLLYTEQGRIFSRQYIMDNIYSDY-R 189

Query: 184 AVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218
            V +  V+SHI KLRKK++    G + + S    GY
Sbjct: 190 VVSDRTVDSHIKKLRKKMQEADPGLELIHSVYGAGY 225


>gi|229011982|ref|ZP_04169162.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
 gi|229060400|ref|ZP_04197766.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|229133551|ref|ZP_04262378.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|229167559|ref|ZP_04295297.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228616121|gb|EEK73208.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228649951|gb|EEL05959.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|228718990|gb|EEL70607.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|228749396|gb|EEL99241.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
          Length = 214

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 56  FEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 115

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++
Sbjct: 116 DKNVNNHLVFKEVRIDVDAYRVYVNDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVW 175

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   E  ++++HI  LRK    KL    + + + +GY ID
Sbjct: 176 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213


>gi|291550513|emb|CBL26775.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 224

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           GE  LE+ + ++  S+   +P+I ++   S    +   DSG DD V KP    E+++R+ 
Sbjct: 55  GEDGLEILKKLKNSSKTKDIPVIMVTAKGSEYDKVVGLDSGADDYVTKPFGMMELISRIK 114

Query: 114 AIYRRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR     ++ +   G I + +   + +V GE   L  +E  +LE LM N+G  + + 
Sbjct: 115 AVLRRSGKQQDKTKLSVGGISLDTKKHEVKVDGEQVVLTLKEFELLEKLMRNQGIVLTRD 174

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + I+G +D   E   V+ HI  LR+KL  +     V + R +GY I
Sbjct: 175 QLLTEIWG-YDFDGETRTVDVHIRTLRQKLGEQGSL--VKTVRGVGYRI 220


>gi|56417080|ref|YP_154154.1| transcriptional activator protein [Anaplasma marginale str. St.
           Maries]
 gi|56388312|gb|AAV86899.1| transcriptional activator protein [Anaplasma marginale str. St.
           Maries]
          Length = 290

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
           +VP++ +S   S+   +     G DD + KP H  E+LAR+ AI RR +    +    G 
Sbjct: 75  KVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVRRTRGHPESIVRVGN 134

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +  D +  E  GE+  L ++E  ++E L +  G  + K    S +Y   DE  ++ ++
Sbjct: 135 ISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 194

Query: 191 ESHISKLRKKLR 202
           +  + KLRKKL+
Sbjct: 195 DVFMCKLRKKLK 206


>gi|24372213|ref|NP_716255.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24346128|gb|AAN53700.1|AE015509_5 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 224

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 9/150 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128
            P+I ++        ++ F++G DD + KP H +E+LAR+ A+    + RL   N +   
Sbjct: 73  TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRLNNPNKQLSY 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +    +   V  +++ L   E R+L+  + +  K ++K Q+   +Y  FD+  E N
Sbjct: 133 GGVTLDEAEQTVSVGEQLYELTAMEFRLLKIFLMSPKKLLSKAQLTDKLYQ-FDDEKESN 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VVE +++ LRK    KLG   ++++R  GY
Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|37526697|ref|NP_930041.1| DNA-binding transcriptional regulator PhoP [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786129|emb|CAE15181.1| Two-component response regulator PhoP [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 222

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        D G  ++   + +  ++    +  D++ ++  L   GE  L
Sbjct: 3   ILIVEDNMLLRHHLTVQLRDTGHLVDAAANAKEADYYLVESEPDIAIVDLGL--PGEDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R   + +P++ ++   S Q  +   D+G DD V KP H  EI+AR+ A+ RR  
Sbjct: 61  SLIRRWRQKDEKLPILVLTARESWQEKVTVLDAGADDYVTKPFHLEEIIARMQALLRRNN 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   E  P ++    ++  V GE   L   E RI+E LM N  K V K  +   +Y 
Sbjct: 121 GLVSQIIEFPPFKIDLSRKEFTVYGESVKLTAFEYRIIEILMCNSDKVVTKESLMRQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  I +LRKK+ +   ++ + + R  GY  D
Sbjct: 181 -DAELREGHSIDVLIGRLRKKILDIWPYEAIVTVRGQGYRFD 221


>gi|311104579|ref|YP_003977432.1| transcriptional regulator TctD 2 [Achromobacter xylosoxidans A8]
 gi|310759268|gb|ADP14717.1| transcriptional regulatory protein TctD 2 [Achromobacter
           xylosoxidans A8]
          Length = 235

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 8/151 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETG 129
           S+ P++ ++    ++  +   D+G DD + KP   RE+ AR  A+ RR    +      G
Sbjct: 71  SKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLRRPSAQAAGVLRFG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + + S  R   + G+   LP+RE  +LE L+A   + V+KT+I   ++  FD+    N 
Sbjct: 131 ELVIDSAARQVTLAGQRIELPKREYSLLEILLAGMNRAVSKTEIAHKLFA-FDDDAAPNA 189

Query: 190 VESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
           +E +I++LR+KL       P  ++++R  GY
Sbjct: 190 IEVYIARLRRKLEGS----PLRIETQRGTGY 216


>gi|260424729|ref|ZP_05733084.2| DNA-binding response regulator PhoP [Dialister invisus DSM 15470]
 gi|260402973|gb|EEW96520.1| DNA-binding response regulator PhoP [Dialister invisus DSM 15470]
          Length = 209

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 90/166 (54%), Gaps = 8/166 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+K+LE    +R  S +P+I +S   S+   ++  ++G DD + KP   +E++AR+ +  
Sbjct: 44  GDKILEN---VREISTIPIIYLSSDGSVDRKVEVLNAGADDYLTKPYATKELIARIRSTL 100

Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR +    V++     G + ++ D  +  V  EV  L ++E  +L +L  N+ + + + +
Sbjct: 101 RRHEEPKIVADPSFNIGDLAIYPDRHEVRVGDEVVDLTKKEFDLLLFLAKNKNRVLKREE 160

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   ++G +  A + N+V+ ++  LR K+  K+G   + + R +GY
Sbjct: 161 VLEKVWG-YGYAGKTNIVDVYVRYLRSKIDEKVGKKYIHTVRGIGY 205


>gi|257889529|ref|ZP_05669182.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|260559821|ref|ZP_05832000.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|257825889|gb|EEV52515.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|260074045|gb|EEW62368.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
          Length = 224

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 5/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I +   Q P++ ++   SL+  ++ F+ G DD + KP +  E++ RV A+ +R    
Sbjct: 63  LAKIRKEKIQPPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGL 122

Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        +  D +  EV  + +V P+  +E  +L Y + N+G  + K QIF  I+G 
Sbjct: 123 FDENVLKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           FD      V+E ++S LRK LR+  G D  + + R +GY
Sbjct: 182 FDSDTTITVIEVYMSNLRKHLRST-GLDKEIKTLRNVGY 219


>gi|154505942|ref|ZP_02042680.1| hypothetical protein RUMGNA_03484 [Ruminococcus gnavus ATCC 29149]
 gi|153793960|gb|EDN76380.1| hypothetical protein RUMGNA_03484 [Ruminococcus gnavus ATCC 29149]
          Length = 217

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 79/144 (54%), Gaps = 3/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L + ++ + ++P I ++     +  L  FD G DD V KP   R +L R+  + +R K
Sbjct: 59  INLYQELQKNGRIPAIFLTAKDDEKDMLKAFDIGADDYVVKPFSIRVLLKRIEVVLKR-K 117

Query: 121 VSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N    G + ++SD +   V + E+F L  +E ++LEYL+ N+ + + K  I   I+G
Sbjct: 118 SNENTFMCGQVILYSDRKQVFVGETEIF-LTVKEYQLLEYLIMNQNQVLTKEMIMENIWG 176

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
           +  E ++ N +   IS+L+KKL +
Sbjct: 177 IDSEFIDSNTISVMISRLKKKLND 200


>gi|325570595|ref|ZP_08146321.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|325156441|gb|EGC68621.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 230

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  S+VP+I +S        +   + G DD + KP     +LA++ A+ RR  + S+ +
Sbjct: 67  IRKISEVPIIFLSSMDQQMNQIMAMNMGADDYLTKPFDLAFVLAKIQALLRRSYQYSHQQ 126

Query: 126 AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           A T   G +  +      + QGE  PL   E RIL  L+ +RGK VAK  I   ++   +
Sbjct: 127 ALTFNIGQVTFYPTENVLKNQGEQLPLSPNEARILSLLLQHRGKIVAKETIIEMLWH-SE 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E ++ N +  ++++LRKKL      D + + +  GY I+
Sbjct: 186 EFIDNNTLAVNMTRLRKKLSQIELSDLIQTVKNKGYLIE 224


>gi|255505528|ref|ZP_05346649.3| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255267413|gb|EET60618.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 251

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 111/221 (50%), Gaps = 12/221 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEK 59
           ++++D A +++ +  +  D      G+NS+   +  E L    R+ +  I A ++     
Sbjct: 31  LVVEDNADMRELFCTVLAD-----HGYNSIPAADGAEALDIMDRQYIDLIVADIMMPNMD 85

Query: 60  VLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +L + +R A+  +P++ ++           F +G DD + KP++  E++ RV A+ RR
Sbjct: 86  GYQLTKALRDANYTLPVLMVTAKDQFIDLQQGFRTGADDYMIKPVNVNELVLRVEALLRR 145

Query: 119 LKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++S+ +  T G   +  D     + G+   LP++E  +L  L++   K   + Q+   I
Sbjct: 146 ARISSEKKITIGSTVLDYDALTVTIHGKETLLPQKEFYLLYKLLSYPNKIFTRQQLMDEI 205

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G+F E  +E  V +HI++LR K  +   F+ V + R LGY
Sbjct: 206 WGMFSET-DERTVNTHINRLRDKFSDCSDFEIV-TVRGLGY 244


>gi|148379025|ref|YP_001253566.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153933944|ref|YP_001383407.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937242|ref|YP_001386955.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|170757255|ref|YP_001780669.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|170760535|ref|YP_001786430.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226948311|ref|YP_002803402.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148288509|emb|CAL82588.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929988|gb|ABS35488.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933156|gb|ABS38655.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|169122467|gb|ACA46303.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169407524|gb|ACA55935.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226841225|gb|ACO83891.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 228

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 18/197 (9%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY       G+ S+E F S++ +  +      D+S         GE   E+ RIIR
Sbjct: 21  LEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDIS---------GE---EVCRIIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL   N+ +  
Sbjct: 69  QSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTYNSTSNL 128

Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I+G+ D  
Sbjct: 129 IFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIFGI-DFN 187

Query: 185 VEENVVESHISKLRKKL 201
             +  ++ HI  +RKK+
Sbjct: 188 GYDRTIDVHIKNIRKKI 204


>gi|296444660|ref|ZP_06886624.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296257928|gb|EFH04991.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 233

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR  
Sbjct: 61  EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRR-- 118

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S   A+    TG + V  D +  EV G    L  +E ++LE L   +G  + K    + 
Sbjct: 119 -SKGHAQSVIITGDLVVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNH 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           +YG  DE  E  +++  I KLRKKL N
Sbjct: 178 LYGGMDEP-ELKIIDVFICKLRKKLAN 203


>gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX]
 gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX]
          Length = 230

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 14/169 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRTLRQKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRTA 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +    +  E GP+R+  +     V+GE   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 DDTVLPSVLEAGPVRMDVERHVVTVRGENVQLPLKEFELLEVLLRNAGRVLTRPQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
           +G  D   +   ++ HI    K+LR K+  DP     + + R LGY  +
Sbjct: 182 WG-ADYVGDTKTLDVHI----KRLRAKIETDPSKPQHIITVRGLGYKFE 225


>gi|329122103|ref|ZP_08250711.1| DNA-binding response regulator [Dialister micraerophilus DSM 19965]
 gi|327466910|gb|EGF12426.1| DNA-binding response regulator [Dialister micraerophilus DSM 19965]
          Length = 226

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 86/158 (54%), Gaps = 5/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VS 122
           +RA S +P++ IS    ++  +  F+SGVDD + KP   +E++AR+ A+ RR K    V 
Sbjct: 68  VRAVSSLPIVVISSDADVEKKVQLFESGVDDYLVKPYATKELVARIHALLRRHKEPQIVV 127

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       + ++ +  +  +   V  L ++E  +L +L+ N+ + + + +I   ++G ++
Sbjct: 128 DPSFNIQDLYIYPERHEVRIGENVIELTKKEFDLLLFLVKNKNRVLKRDEIMKKVWG-YE 186

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + N+V+ +I  +R K+  K G   V + R +GY +
Sbjct: 187 YSGKTNIVDVYIRYIRSKIDEKFGKKYVHTVRGIGYVV 224


>gi|228953050|ref|ZP_04115111.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229079910|ref|ZP_04212442.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228703494|gb|EEL55948.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228806668|gb|EEM53226.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 214

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 20/215 (9%)

Query: 10  LVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L+   Y  +   DG+  +  FN   F+  L      +++              E+ ++IR
Sbjct: 16  LMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVMMPNLNG------------FEVSKMIR 63

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRA 126
           + S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   K  NN  
Sbjct: 64  SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNVNNHL 123

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D   E
Sbjct: 124 IFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YDYFGE 182

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++++HI  LRK    KL    + + + +GY ID
Sbjct: 183 TRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213


>gi|152988285|ref|YP_001348119.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150963443|gb|ABR85468.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 226

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 7/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G +A     G++++   S    + L   AR DV  ++  L  + + +  
Sbjct: 4   LLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDE-DGLRL 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+ +    +P++ ++   ++   +    +G DD + KP   RE+ AR+  + RR    
Sbjct: 63  LQRLRQQGFDLPVLVLTARDAVTDRVAGLQAGADDYLLKPFDLRELGARLHTLQRRSAGR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  E G +      R+  + G    L RRE+ +L+ L+ NRG+ ++  Q+  ++YG  
Sbjct: 123 CVNVIEHGRLSYDPSTRETWLDGRPIELSRREQALLQALLNNRGRILSGEQLKDSVYGFG 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           DE VE N +  HI  LR+KL N +    V + R LGY +
Sbjct: 183 DE-VESNALNVHIHHLRRKLGNAI----VQTVRGLGYRL 216


>gi|260754024|ref|YP_003226917.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258553387|gb|ACV76333.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 234

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL+  R   A  + P+I +S    +++ +     G DD + KP H  E++AR+ A+ 
Sbjct: 59  GYEVLKTLRT--AQVKTPIIVLSGIAEMESKVRALGFGADDYLTKPFHQEELIARIQAVV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR +  S +  +TG + V  D +  E+  +   L  +E  ILE L   +G  + K    +
Sbjct: 117 RRSQGHSQSIIKTGHLTVNLDSKTVEIDNKPVHLTGKEYAILELLSLRKGTTITKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  + KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFVCKLRKKL 201


>gi|51473272|ref|YP_067029.1| transcriptional activator protein CzcR [Rickettsia typhi str.
           Wilmington]
 gi|51459584|gb|AAU03547.1| transcriptional activator protein CzcR [Rickettsia typhi str.
           Wilmington]
          Length = 237

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  + P++ +S        +  F SG DD + KP    E++AR+ AI RR   S
Sbjct: 63  LLRLRAAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRR---S 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A +      + V  D R  EV G+   L  +E  ILE L+  RG  + K    + +Y
Sbjct: 120 KGHAASVFRFDKVSVNLDTRSVEVDGKKIHLTNKEYSILELLIIRRGTILTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              DE  E  +++  I KLRKKL +  G  D +D+    GY +
Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221


>gi|323137579|ref|ZP_08072656.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322397205|gb|EFX99729.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 233

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G    L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVIATGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
             DE  E  +++  I KLRKKL N
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203


>gi|316934907|ref|YP_004109889.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602621|gb|ADU45156.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 224

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  R    +P++ ++        +  FD+G DD V KP H  E+LAR+ A+ 
Sbjct: 59  GISVLEAWR--RNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALL 116

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    + +    GP+ + +        G    L   E R+L YLM + G+ V++T++  
Sbjct: 117 RRSAGHAQSELSCGPVVLDTRTGRVSANGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVE 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   FD   + N +E  + ++RK    KLG D + + R LGY
Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRK----KLGVDIIQTVRGLGY 214


>gi|85702768|ref|ZP_01033872.1| DNA-binding response regulator CtrA [Roseovarius sp. 217]
 gi|85671696|gb|EAQ26553.1| DNA-binding response regulator CtrA [Roseovarius sp. 217]
          Length = 238

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R  +  P++ +S      + +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLARVAT--PILILSGAGDTDSKIRGFGFGADDYLTKPFHRDELVARIHAII 116

Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG + V  D +  +  G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSVIRTGMVNVNLDAKTVDAGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|317502228|ref|ZP_07960401.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896343|gb|EFV18441.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 221

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 5/205 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           +F+L DD+ L K   IAL  D+      +  LE  +  Q   + D+  ++  L  G G  
Sbjct: 4   IFLLEDDKILSKGISIALKKDEHTVTAVYGYLEALQQYQKQ-KYDLFLLDINLPDGNG-- 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE  + IR  S+ P++ ++   + +  L+ F  G DD ++KP     +  +V A+ +R 
Sbjct: 61  -LEFCKKIRETSETPVLFLTANDTEEDMLEGFGVGCDDYISKPFSIEVLRKKVLAVLKRT 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   R +   + +  +     ++G+   L   E ++L YLM NRG+ V K  +   ++ 
Sbjct: 120 GIGKFRMKYRDLELDKEKCVVLMKGQEIHLTSTEYKLLLYLMENRGRVVTKAMLLEQLWD 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
           +    V++N V  +I +LR+KL ++
Sbjct: 180 IDGNFVDDNTVRVNIKRLRQKLHDE 204


>gi|253573996|ref|ZP_04851338.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846473|gb|EES74479.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 221

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 3/157 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121
           L R IR+    P++ ++        ++    G DD + KP    E+ AR+AA + R  + 
Sbjct: 64  LCRQIRSKVDCPILFLTAKSMENDLVEGLSIGADDYIVKPFGAGELRARIAAHLRRESRE 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    G +     G++  VQ    PL + E  I E+L  NRG+  +K QI+ +++G F
Sbjct: 124 RRSVLCIGEVHFNLSGKEMRVQDTFIPLTKSEYAICEFLALNRGQVFSKDQIYESVFG-F 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D   E + +  H+  +R KL N++  +P+++   +GY
Sbjct: 183 DGESEASTIVEHVKNIRAKL-NQMNVNPIETVWGIGY 218


>gi|229097240|ref|ZP_04228202.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|229103326|ref|ZP_04234009.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|229116236|ref|ZP_04245626.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228667068|gb|EEL22520.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228680165|gb|EEL34359.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228686051|gb|EEL39967.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 214

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 20/215 (9%)

Query: 10  LVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L+   Y  +   DG+  +  FN+  F+  L      +++              E+ ++IR
Sbjct: 16  LMTQHYTVVVASDGLEGMTQFNNQSFDLILLDVMMPNLNG------------FEVSKMIR 63

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRA 126
           + S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   K  NN  
Sbjct: 64  SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNVNNHL 123

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D   E
Sbjct: 124 IFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YDYFGE 182

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++++HI  LRK    KL    + + + +GY ID
Sbjct: 183 TRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213


>gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 227

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   +++ R +R  S VP+I ++   S    +   + G DD V KP   RE+LARV
Sbjct: 53  LMLPGLSGIDVCRALRQRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARV 112

Query: 113 AAIYRRLKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            A+ RRL    +      E GP+R+  +     V G    LP +E  +LE L+ N G+ +
Sbjct: 113 KAVLRRLAEPEDLLPPTIEAGPVRMDVERHTVTVNGAPTSLPLKEFELLEMLLRNSGRVL 172

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            + Q+   ++G  D   +   ++ H+    K+LR K+  DP     + + R LGY
Sbjct: 173 TRMQLIDRVWG-SDYVGDTKTLDVHV----KRLRAKVEPDPARPVHIVTVRGLGY 222


>gi|298292563|ref|YP_003694502.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296929074|gb|ADH89883.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127
           A  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K  + +   
Sbjct: 69  AKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSKGHAQSVIT 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           TG + V  D +  EV G    L  +E ++LE L   +G  + K    + +YG  DE  E 
Sbjct: 129 TGDLVVNLDTKTVEVAGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-EL 187

Query: 188 NVVESHISKLRKKLRN 203
            +++  I KLRKKL N
Sbjct: 188 KIIDVFICKLRKKLAN 203


>gi|292558419|gb|ADE31420.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis GZ1]
          Length = 242

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++  +   SL+     F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 92  TPVLITTAKESLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLTYGDV 151

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V        V GE   L  +E  +L Y + N+   + KTQIF  I+G FD     +VVE
Sbjct: 152 TVDLSTNSTTVNGEEVELLGKEFDLLVYFLQNQNVILPKTQIFDRIWG-FDSDTTISVVE 210

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+     + + + R +GY
Sbjct: 211 VYVSKIRKKLKGTTFGENLQTLRSVGY 237


>gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 230

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 11/149 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR HS+VP+I ++        +   + G DD + KP + RE++AR+ A+ RR  
Sbjct: 61  LEVCRQIRMHSRVPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVLRR-- 118

Query: 121 VSNNRAETGPIRVFS-DGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           VS+   ++G  +V   +G +  +       QG   P   +E  +L  L +N G+   + Q
Sbjct: 119 VSDISTDSGKQQVLKYNGLEINIMDFTVKLQGREIPFTPKELELLWLLASNPGRVYTREQ 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   ++G +D   +   V++HI ++RKK+
Sbjct: 179 LLEKVWG-YDYFGDSRTVDTHIKRIRKKI 206


>gi|295093683|emb|CBK82774.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 222

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 12/214 (5%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LVK+GY      DG +    + +E E +          AI   +I   + +  L  +  A
Sbjct: 20  LVKEGYNVDACYDGQA--ALDYMEAENY--------DGAIMDIMIPNKDGITVLREMRNA 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128
             QVP++ ++     Q  +   D+G  D + KP    E++AR+  + R    V+ N    
Sbjct: 70  GIQVPVLFLTAKTETQDIVRGLDAGASDYMTKPFEFSELMARLRVMLRTQNPVNENVITC 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + V  + R     G+V  L  RE  ILEYL  NR   V + QI   I+ + D+ V  N
Sbjct: 130 GSLVVDMNNRQAIRDGKVIDLTVREYAILEYLARNRNVVVTREQIRVNIWNI-DDDVNSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           V++ +I  LR+K+ +      + + R +GY ++ 
Sbjct: 189 VIDVYIRYLRRKIDDNYEEKLIHTIRGVGYKLEC 222


>gi|220923532|ref|YP_002498834.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219948139|gb|ACL58531.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 233

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+  A  + P++ +S    ++  +     G DD + KP H  E++AR+ AI 
Sbjct: 59  GYEVLRSLRV--AKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +   TG + V  D +  EV G    L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVITTGDLIVNLDQKTVEVSGARVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            +YG  DE  E  +++  I KLRKKL N
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAN 203


>gi|94968685|ref|YP_590733.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550735|gb|ABF40659.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 12/170 (7%)

Query: 61  LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L LP++        +R H + P++ ++    L+  +   D G DD + KP    E+ ARV
Sbjct: 52  LNLPKLDGFGVLQQVRDHKRCPILVLTGRTRLEDRVRVLDGGADDCLLKPFSFAELSARV 111

Query: 113 AAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A+ RR +  +  +     + +    R     G    L  +E  +LEYLM N G+RV +T
Sbjct: 112 RALLRRGVSAAQFKLRVADLELDRVQRTVARSGRRIELTSKEFALLEYLMRNAGRRVTRT 171

Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I   ++ L FD     NVV+ +++ LR+K+ ++     + + R +GY I
Sbjct: 172 MIIEHVWNLKFDTGT--NVVDVYVNYLRRKVDSEFPTKLIGTVRGVGYEI 219


>gi|302333994|gb|ADL24187.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 224

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 96/186 (51%), Gaps = 6/186 (3%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L    R D++ ++  +   G    +L   ++    +P+I ++   +L      F SG DD
Sbjct: 40  LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156
            V KP   +E++ R+ A+ RR  +++N  +T G + +     + +V  +   LP +E ++
Sbjct: 98  YVTKPFEVKELIFRIRAVLRRYNINSNSEKTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157

Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           L +++A R K++  + QI   I+G +D   +E  V+ HI +LR++L+       +++ R 
Sbjct: 158 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215

Query: 216 LGYSID 221
            GY ++
Sbjct: 216 QGYKVE 221


>gi|254501704|ref|ZP_05113855.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437775|gb|EEE44454.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 222

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LARV A+ RR    ++N    G +R+        V G    L
Sbjct: 91  IDAGADDYVAKPFHMEEVLARVRALVRRAAGHASNELTCGNVRLDLRAGRVTVDGSPIKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YL+ ++GK +++T++   +Y   FD   + N VE  + +LRK    K+G +
Sbjct: 151 TSHEYRLLSYLLHHQGKVISRTELTEHLYDQDFDR--DSNTVEVFVGRLRK----KIGAE 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY +
Sbjct: 205 MIETIRGLGYRL 216


>gi|255527459|ref|ZP_05394330.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186052|ref|ZP_06854457.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255508839|gb|EET85208.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049320|gb|EFG88749.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 232

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 11/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  ++ P+I +S   S +T L+  + G DD + KP    E++ARV +  RR L+ S   
Sbjct: 70  IREITKAPIIVVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVKSNLRRYLEFSTGG 129

Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   I V+ D       ++ +V   +  L  RE  ILE L+ N  K  +K+ IF +I+ 
Sbjct: 130 EKKNNILVYKDISLNIESKEVKVGQTLITLTAREFDILELLLKNPSKVYSKSNIFESIWE 189

Query: 180 LFDEAV-EENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +E + E N +  H+S+LR KL N   G D +++   +GY +
Sbjct: 190 --EEFLGEYNTINVHVSRLRTKLCNAGDGKDYIETVWGMGYRL 230


>gi|170695630|ref|ZP_02886773.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170139429|gb|EDT07614.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 219

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 6/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L RI  A + VP++ ++   ++   +   ++G DD + KP    E+ AR  A+ RR +  
Sbjct: 63  LKRIRDAGNDVPVLVLTARGTVVDRVSGLEAGADDYLGKPFDLTELTARCRALLRRAQGR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S      G + V    +  ++ G   PL  RE  IL  L+ N+G   +++++  ++YG +
Sbjct: 123 SVELICYGDLTVNPAAQTAQLAGTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +E N +E HIS LR+KL  KL    + + R +GY ++
Sbjct: 182 QQEIESNAIEVHISNLRRKLGAKL----IRTVRNIGYVVE 217


>gi|124005018|ref|ZP_01689861.1| two-component system response regulator [Microscilla marina ATCC
           23134]
 gi|123989696|gb|EAY29242.1| two-component system response regulator [Microscilla marina ATCC
           23134]
          Length = 225

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 2/150 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-G 129
           SQ  ++ IS   SL   L   D G DD + KP H  E+ AR+ +I RR     N      
Sbjct: 71  SQAGVLIISAKNSLDDKLAGLDLGADDYITKPFHLAELNARIKSILRRRNFEGNHEVIFQ 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEEN 188
            IRV +D  +  V G++  L ++E+ +L Y ++N+ + + K  I   ++G   D A   +
Sbjct: 131 EIRVNTDKFETLVNGQLVVLTQKEQELLLYFISNKNRVLTKESIAEHLWGDHMDMADSFD 190

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + +HI  LR+K+  K G + + +   +GY
Sbjct: 191 FIYTHIKNLRRKIAQKGGKNYLQTVYGIGY 220


>gi|87199648|ref|YP_496905.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135329|gb|ABD26071.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 227

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 33/227 (14%)

Query: 8   RALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           R L ++G  + L  D    LE   SL F+  L      D+   E              R+
Sbjct: 18  RGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGFEV-----------CARL 66

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
               S +P+I ++    +   +     G DD + KP    E+LAR+ AI RR+  S    
Sbjct: 67  REQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMAPSQGG- 125

Query: 127 ETGPIRVFSDGR--------DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +V  DGR        DP        G    L  +E  +L  LM + G  +++T+I
Sbjct: 126 -----KVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             A++G+ D+ +  N+VE ++S+LR+KL + LG   V++ R  GY +
Sbjct: 181 LRAVWGMEDDPL-TNIVEVYLSRLRRKL-HALGPPVVENVRGFGYRL 225


>gi|15597675|ref|NP_251169.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107101924|ref|ZP_01365842.1| hypothetical protein PaerPA_01002970 [Pseudomonas aeruginosa PACS2]
 gi|116050423|ref|YP_790758.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218891541|ref|YP_002440408.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254235479|ref|ZP_04928802.1| hypothetical protein PACG_01395 [Pseudomonas aeruginosa C3719]
 gi|254240911|ref|ZP_04934233.1| hypothetical protein PA2G_01589 [Pseudomonas aeruginosa 2192]
 gi|296389103|ref|ZP_06878578.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|9948530|gb|AAG05867.1|AE004675_8 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115585644|gb|ABJ11659.1| probable two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167410|gb|EAZ52921.1| hypothetical protein PACG_01395 [Pseudomonas aeruginosa C3719]
 gi|126194289|gb|EAZ58352.1| hypothetical protein PA2G_01589 [Pseudomonas aeruginosa 2192]
 gi|218771767|emb|CAW27544.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 226

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  L+  G +A     G++++   S    + L   AR DV  ++  L  + + + 
Sbjct: 3   VLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDE-DGLR 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L R+ +    +P++ ++   ++   +    +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLQRLRQQGVDLPVLVLTARDAVTDRVAGLQAGADDYLLKPFDLRELGARLHTLQRRSAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  E G +      R+  + G    L RRE+ +L+ L+ NRG+ ++  Q+  ++YG 
Sbjct: 122 RCVNVIEHGRLSYDPSTRETWLDGRPVELSRREQALLQALLNNRGRILSGEQLKDSVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL N +    V + R LGY +
Sbjct: 182 GDE-VESNALNVHIHHLRRKLGNAI----VQTVRGLGYRL 216


>gi|170742091|ref|YP_001770746.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196365|gb|ACA18312.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 233

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+  A  + P++ +S    ++  +     G DD + KP H  E++AR+ AI 
Sbjct: 59  GYEVLRSLRV--AKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +   TG + V  D +  EV G    L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVITTGDLIVNLDQKTVEVSGARVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            +YG  DE  E  +++  I KLRKKL N
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAN 203


>gi|152998792|ref|YP_001364473.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|151363410|gb|ABS06410.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
          Length = 219

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++   +    +D   +G DD + KP H  E+LAR+  + RR    ++N  +   I
Sbjct: 73  MPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGI 132

Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
            +  D +    V GEV  L + E R+L YLM N  K V+K+++   IY   D+  + NV+
Sbjct: 133 SLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIYE-EDQIKDSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++++LR+    +LG D ++++R  GY +
Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217


>gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 229

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 21/169 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   ++N A
Sbjct: 67  LRAKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR--GADNEA 124

Query: 127 ET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            T         GP+R+  +     V G+   LP +E  +LEYL+ N G+ + + Q+   +
Sbjct: 125 ATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
           +G  D   +   ++ H+ +LR K+      DP   K     R LGY ++
Sbjct: 185 WG-ADYVGDTKTLDVHVKRLRAKIEG----DPGKPKHLVTVRGLGYKLE 228


>gi|210616623|ref|ZP_03291153.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787]
 gi|210149733|gb|EEA80742.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787]
          Length = 220

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 10/164 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R +R  SQVP+I ++        +  FD   DD + KP   R +L R+ AI+RR  
Sbjct: 61  FDVCREVREMSQVPIIILTALDEEDAEVKCFDLKADDYIVKPYSVRVVLKRIEAIFRRAN 120

Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V N + E   +    ++    R   V G+   L R E  I++YL+ N+GK   + ++ S 
Sbjct: 121 VGNQQEENCLVYENLKLDLASRTVYVNGKEVFLTRIEFDIVKYLIRNQGKVCTRYELLSE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   +    E  V  HI  LRKK     G   + + R +GY I
Sbjct: 181 VWEC-EYCTGEREVNFHIMNLRKK-----GIQGIQTVRGIGYKI 218


>gi|170694237|ref|ZP_02885392.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170140977|gb|EDT09150.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 219

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 6/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L RI  A + VP++ ++   ++   +   ++G DD + KP    E+ AR  A+ RR +  
Sbjct: 63  LKRIRDAGNDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELTARCRALLRRAQGR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S      G + V    +  +V G   PL  RE  IL  L+ N+G   +++++  ++YG +
Sbjct: 123 SVEVIRYGDLTVNPAAQTAQVAGTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +E N +E HIS LR+KL  +L    + + R +GY ++
Sbjct: 182 QQEIESNAIEVHISNLRRKLGARL----IRTVRNIGYVVE 217


>gi|229070198|ref|ZP_04203454.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|228712922|gb|EEL64841.1| Two-component response regulator vanRB [Bacillus cereus F65185]
          Length = 221

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 20/215 (9%)

Query: 10  LVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L+   Y  +   DG+  +  FN   F+  L      +++              E+ ++IR
Sbjct: 23  LMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVMMPNLNG------------FEVSKMIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRA 126
           + S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   K  NN  
Sbjct: 71  SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNVNNHL 130

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D   E
Sbjct: 131 IFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YDYFGE 189

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++++HI  LRK    KL    + + + +GY ID
Sbjct: 190 TRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 220


>gi|229194886|ref|ZP_04321669.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228588590|gb|EEK46625.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 229

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 5/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + RI     + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR    
Sbjct: 68  IQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSL 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G 
Sbjct: 128 TTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVWG- 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           FD      +VE ++  LRKKL    G+   + + R +GY
Sbjct: 187 FDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224


>gi|119897270|ref|YP_932483.1| transcriptional regulator [Azoarcus sp. BH72]
 gi|119669683|emb|CAL93596.1| probable transcriptional regulatory protein [Azoarcus sp. BH72]
          Length = 223

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 10/142 (7%)

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R+  Q  P+I IS   +L+  +   D G DD V KP    EI AR+ A+ RR  
Sbjct: 61  ELVRRLRSRRQTTPVIFISARQALEDRIHGLDLGADDYVVKPAEISEITARMRAVLRRGP 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GPI + +DGR   + G+  PL  RE  ILE L+A  G+ VAK ++ +   G
Sbjct: 121 YRIGDEMRFGPIMLDADGRLASLNGQALPLTGREWEILEALVAADGRTVAKDRLQADSGG 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
                   N  E +IS+LR +L
Sbjct: 181 --------NAAEVYISRLRPRL 194


>gi|58580811|ref|YP_199827.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425405|gb|AAW74442.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 249

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 6/132 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149
            D G DD + KP    E+LAR  A+ RR       A + G +R+   G      G    L
Sbjct: 108 LDVGADDYLGKPFDTNELLARTRALLRRSAGRTQPALQAGALRLDPAGMSVRWHGRDLDL 167

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            RRE  +L  LM  RG+ + + +I   +YG +DE V  N V+ H+ +LR+KL   +    
Sbjct: 168 TRREFALLWLLMEQRGRPIGRERIQQHLYG-WDEDVASNAVDVHVHQLRRKLSAAV---- 222

Query: 210 VDSKRFLGYSID 221
           + + R +GY++D
Sbjct: 223 IRTIRGIGYALD 234


>gi|76817820|ref|YP_337428.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1710b]
 gi|76582293|gb|ABA51767.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1710b]
          Length = 287

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 124 LDVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 183

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   + R E GP+   S  R   +  +   L  RER +LE L+   G+ + K  +   I+
Sbjct: 184 LGHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 243

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           GL DE+V  + +E ++ +LRKKL
Sbjct: 244 GL-DESVNADAIEIYVHRLRKKL 265


>gi|239947000|ref|ZP_04698753.1| transcriptional activator protein CzcR [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921276|gb|EER21300.1| transcriptional activator protein CzcR [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 237

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  + P++ +S        +  F SG DD + KP    E++AR+ AI RR   S
Sbjct: 63  LLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A +      + V  D R  EV G+   L  +E  ILE L+  RG  + K    + +Y
Sbjct: 120 KGHAASVFRFDKVSVNLDARSVEVNGKKVHLTNKEYAILELLILRRGTILTKEMFLNYLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              DE  E  +++  I KLRKKL +  G  D +D+    GY +
Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221


>gi|228989703|ref|ZP_04149685.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228770037|gb|EEM18619.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 223

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 5/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + RI     + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR    
Sbjct: 62  IQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRSGNL 121

Query: 123 NNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       I +F   +D +V GE   L  ++  +LEYL+ N GK + + QIF  ++G 
Sbjct: 122 TTKQTINYRGIELFGKDKDIQVGGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           FD      +VE ++  LRKKL    G+   + + R +GY +
Sbjct: 181 FDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYML 220


>gi|218660659|ref|ZP_03516589.1| probable two-component response regulator protein [Rhizobium etli
          IE4771]
          Length = 60

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query: 1  MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK 56
          M V++D+R LVKDGY +LFG +G+   GF+  EF +W+Q++A  D++A+EAFLIG+
Sbjct: 1  MIVVVDERELVKDGYTSLFGREGIPSTGFDPSEFGDWVQTAADSDIAAVEAFLIGQ 56


>gi|212633628|ref|YP_002310153.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212555112|gb|ACJ27566.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 224

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D  L+ +  +      G   +  + +   ++L      D   ++  L  G G ++
Sbjct: 3   LLLVEDNTLLVEELLKQLKQAGYVTDTTDKISEADYLIKETNYDCVILDIGLPDGNGLEL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE  R    H+  P+I ++        ++ F+SG DD + KP H +E+L R+ A+ +R  
Sbjct: 63  LERWREQGIHT--PVIMLTARSQWHEKVEGFNSGADDYLGKPFHTQELLVRIQALIQRAH 120

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N +     + +    +   V    F L   E R+L+  + +  K ++K Q+   
Sbjct: 121 GKANTPNKQLTYAGVALDESQQSVTVADNTFELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +Y  FD+  E NVVE +++ LRK    KLG   ++++R  GY
Sbjct: 181 LYQ-FDDEKESNVVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|163814531|ref|ZP_02205920.1| hypothetical protein COPEUT_00682 [Coprococcus eutactus ATCC 27759]
 gi|158450166|gb|EDP27161.1| hypothetical protein COPEUT_00682 [Coprococcus eutactus ATCC 27759]
          Length = 239

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 13/145 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           +R  SQVP+I  S   S    ++  D G DD + KP   +E+++R+ +I RR   V +N+
Sbjct: 74  LRHTSQVPIIFASVRTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYGVDDNK 133

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQIFSA 176
           +E   + + +DG + E+      + R         +E  +L Y+  NRG+ + K QI SA
Sbjct: 134 SEM--LTLNTDGNEIEINRYARTVSRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQIMSA 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++GL+ + VE + V  H+  LR+KL
Sbjct: 192 VWGLYSD-VEPSTVAVHVRWLREKL 215


>gi|15599970|ref|NP_253464.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa PAO1]
 gi|116052923|ref|YP_793240.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296391604|ref|ZP_06881079.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
 gi|9951041|gb|AAG08162.1|AE004891_4 PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa PAO1]
 gi|115588144|gb|ABJ14159.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 221

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 12/135 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
            DSG DD + KP    E+ ARV A+ RR   +  RA      G +R+        + G+ 
Sbjct: 91  LDSGADDYLTKPFDLDELQARVRALTRR---TTGRALPQLVHGELRLDPATHQVTLSGQA 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  RE  +L  L+ N GK +++ Q+  ++YG +   VE N +E H+  LR+KL N+L 
Sbjct: 148 VELAPREYALLRLLLENSGKVLSRNQLEQSLYG-WSGDVESNAIEVHVHHLRRKLGNQL- 205

Query: 207 FDPVDSKRFLGYSID 221
              + + R +GY ID
Sbjct: 206 ---IRTVRGIGYGID 217


>gi|260221887|emb|CBA30899.1| Transcriptional regulatory protein tctD [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 224

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +RA  S +P++ ++   S+   +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  LEVLKKLRARGSSLPVLILTAADSVDERVKGLDYGADDYMAKPFSLQELEARVRALIRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGATSSSIKHGPLTYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 E-WGEEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220


>gi|298695623|gb|ADI98845.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323443678|gb|EGB01291.1| two-component response regulator [Staphylococcus aureus O46]
          Length = 224

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L    R D++ ++  +   G    +L   ++    +P+I ++   +L      F SG DD
Sbjct: 40  LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156
            V KP   +E++ R+ A+ RR  +++N   T G + +     + +V  +   LP +E ++
Sbjct: 98  YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157

Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           L +++A R K++  + QI   I+G +D   +E  V+ HI +LR++L+       +++ R 
Sbjct: 158 L-FMLATRPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215

Query: 216 LGYSID 221
            GY ++
Sbjct: 216 QGYKVE 221


>gi|225573433|ref|ZP_03782188.1| hypothetical protein RUMHYD_01625 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039184|gb|EEG49430.1| hypothetical protein RUMHYD_01625 [Blautia hydrogenotrophica DSM
           10507]
          Length = 228

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 3/163 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   E  R IR  +  P++ ++        L     G DD + KP    E+ AR+AA  
Sbjct: 56  GEDGFETCRRIRGLADCPIVFLTAKTEEADILTGLGIGGDDYLTKPFRLGELRARIAAHL 115

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR  ++  NR     +      R    QG +  L + E  I EYL  + G+  +K QI+ 
Sbjct: 116 RREQRIPQNRVRRAGLDFDLGERAVYRQGNLVRLTKGEYGICEYLALHAGQTFSKEQIYE 175

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           A++G ++   +E+ V  H+  +R KL+ K G  P+++   +GY
Sbjct: 176 AVFG-WEGTSDESAVTEHVKNIRAKLK-KEGVSPIETVWGIGY 216


>gi|49081882|gb|AAT50341.1| PA2479 [synthetic construct]
          Length = 227

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  L+  G +A     G++++   S    + L   AR DV  ++  L  + + + 
Sbjct: 3   VLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDE-DGLR 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L R+ +    +P++ ++   ++   +    +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLQRLRQQGVDLPVLVLTARDAVTDRVAGLQAGADDYLLKPFDLRELGARLHTLQRRSAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  E G +      R+  + G    L RRE+ +L+ L+ NRG+ ++  Q+  ++YG 
Sbjct: 122 RCVNVIEHGRLSYDPSTRETWLDGRPVELSRREQALLQALLNNRGRILSGEQLKDSVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL N +    V + R LGY +
Sbjct: 182 GDE-VESNALNVHIHHLRRKLGNAI----VQTVRGLGYRL 216


>gi|330889414|gb|EGH22075.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 225

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   +     +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAGEALYQVTQFNHDLAVIDLGLPGIGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL + + F P+++ R +GY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGY 218


>gi|283457730|ref|YP_003362317.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133732|dbj|BAI64497.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 233

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 105/212 (49%), Gaps = 15/212 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L ++G+ A+F ++G          FE +++S+   D+  ++  L   G   +E+ + IR 
Sbjct: 26  LAQEGFNAVFCENGAR-------AFETFMRSTP--DLVLLDLML--PGMNGIEVCQQIRR 74

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
            S VP+I ++     +  +   ++G DD + KP  H E+LAR+    R  +        G
Sbjct: 75  SSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRPRESRQLVVSIG 134

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +  DGR  +      P+   E  +L  L+ + G+ +++ ++   ++G  D  V +++
Sbjct: 135 DIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVWGYTD--VSDSL 192

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           V  H+ +LR K  ++LG D  + + R +GY I
Sbjct: 193 VNVHVQRLRAKF-DELGADRFIQTVRGVGYKI 223


>gi|229015889|ref|ZP_04172855.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022109|ref|ZP_04178662.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739199|gb|EEL89642.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745402|gb|EEL95438.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 229

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 77  ETPVLFLTAKDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 137 GIELFGKDKDAQVDGQAIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 195

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224


>gi|71907507|ref|YP_285094.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71847128|gb|AAZ46624.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 229

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D AL+ DG        G  ++  N     + L ++   D+  ++  L G  G +V
Sbjct: 3   ILLVEDDALLADGLARALRHSGYIVDTANDGLSADSLLANEAYDLVILDIGLPGLDGCEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           L+  R  R   Q P++ +S   +++  +   D G DD V KP+   E+ ARV A I RRL
Sbjct: 63  LQRLRTRR--QQTPVLVLSARLAVEERVRLLDLGADDYVVKPVTQAELEARVRALIRRRL 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G +R+ + G+   +      L  RE   LE+L     + V+K Q+  A+Y 
Sbjct: 121 GEASPEVVLGSLRLDTVGKRAWLNDTALELNAREWAALEFLAGRVNRIVSKEQLIQALYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             DE +  N +E  +S+LR KL  + G   + + R LGY ++
Sbjct: 181 WQDE-ITPNAIEKLVSRLRVKL-EEAGI-TIRTVRGLGYYLE 219


>gi|170755155|ref|YP_001781532.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120367|gb|ACA44203.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 221

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 21/217 (9%)

Query: 9   ALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
            L + GY+     DG +++E F    F+  +       +  I+ F++ +         II
Sbjct: 21  VLKESGYLVEVATDGLIAVEMFRRWNFDLIILDVM---LPKIDGFVVCE---------II 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124
           R  S VP+I ++     +  +  F+  VDD + KP     ++ RV A+ RR   L+ +N+
Sbjct: 69  RKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNS 128

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 I ++       V  +   L  +E +ILE L++N G+  ++  + + I+G +D  
Sbjct: 129 TLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNAGRVFSRESLLNQIWG-YDYF 187

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  V+++HI    K LR KL  D + + R +GY I+
Sbjct: 188 GDTRVIDTHI----KNLRQKLNIDYIKTIRGVGYKIE 220


>gi|150378031|ref|YP_001314626.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032578|gb|ABR64693.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 222

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +L+  R  R   ++P+I ++ +  +   +   ++G DD + KP+   E+ AR+ A
Sbjct: 57  GSGLDILKALRARR--DEMPVIIMTAHDQVSDRIAGLNAGADDYLVKPVDLGELQARIHA 114

Query: 115 IYRRLKVSNNRAET-GPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + RR         T G + V+   R    Q GE   L  RE  +L+ L+A +   V+K+Q
Sbjct: 115 VARRYGTHKLPDLTIGGVAVYPSERRISAQDGEEVLLSSREWAVLDRLIARKRAIVSKSQ 174

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  A+Y  F   VE N VE ++S+LR+    KLG D +++ R +GY I
Sbjct: 175 IEEALYA-FGAEVESNTVEVYVSRLRR----KLGKDAIETVRGVGYRI 217


>gi|257094853|ref|YP_003168494.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047377|gb|ACV36565.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 219

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 6/153 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A    P + ++    L   +   DSG DD + KP    E+ AR+ A+ RR    + +R  
Sbjct: 68  ARDSTPALMLTARDLLSDRVQGLDSGADDYLVKPFAPEELSARLRAVCRRSAGGAASRLS 127

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + V    R   + G+   L  RE  ILE L+   G+ V K  +   + G F+  +  
Sbjct: 128 FGRVEVDLTARSAWLAGQRIELTGREWSILEALVLRAGRIVPKADLERLVLG-FEAELAS 186

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N +E H+S LR+    KLGFD V++ R LGY I
Sbjct: 187 NAIEVHVSGLRR----KLGFDLVETVRGLGYRI 215


>gi|94311320|ref|YP_584530.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|254241470|ref|ZP_04934792.1| hypothetical protein PA2G_02165 [Pseudomonas aeruginosa 2192]
 gi|24461541|gb|AAN62112.1|AF440523_19 putative response-regulator ArmR [Pseudomonas aeruginosa]
 gi|93355172|gb|ABF09261.1| ArmR, DNA-binding response regulator (QseB) [Cupriavidus
           metallidurans CH34]
 gi|126194848|gb|EAZ58911.1| hypothetical protein PA2G_02165 [Pseudomonas aeruginosa 2192]
          Length = 222

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 13/167 (7%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL   +RA   Q+P++ ++   +++  L     G DD + KP   RE+ AR+ A+ RR 
Sbjct: 60  MELLASMRAVEPQLPVLILTARDAIEHRLKGLHEGADDYMIKPFDLRELAARLHALVRR- 118

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +  RA      GP+R+  +      QGE   L RRE  +L +L    G+ V    +  
Sbjct: 119 --TQGRAAQVISAGPLRLEPESGLAWFQGEPVSLSRREVDLLAHLANADGRWVPPDMLNE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +YGL +E +  N +  HI  +R+    KLG + +++ R LGY + W
Sbjct: 177 RLYGLGEE-IGSNALNVHIHNIRR----KLGAEAIETVRGLGYRLGW 218


>gi|309792219|ref|ZP_07686691.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308225760|gb|EFO79516.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 226

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 29/177 (16%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R IR +S VP+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DICRQIRRNSDVPIIFLSGRSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRNS 120

Query: 119 -LKVSNNRAETG-----PIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            L  +++R   G     P+    +FSDGR  E+     PL   E R+L YLM N G+ + 
Sbjct: 121 DLLSTSSRLSHGDLTLDPVEHKAIFSDGRTIELT----PL---EFRLLYYLMKNAGRILN 173

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
            +QI S ++G +D   E N+V  +I    ++LR K+  DP     V + R LGY  +
Sbjct: 174 VSQILSKVWG-YDYEGESNLVAVYI----RRLRTKIERDPEHPTYVITVRNLGYKFE 225


>gi|160934265|ref|ZP_02081652.1| hypothetical protein CLOLEP_03136 [Clostridium leptum DSM 753]
 gi|156866938|gb|EDO60310.1| hypothetical protein CLOLEP_03136 [Clostridium leptum DSM 753]
          Length = 223

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 10/160 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS        +   + G DD ++KP     ++A++ A+ RR   + +  
Sbjct: 67  IRKASKVPIIFISSASDNMNIVMAMNMGADDFISKPFDQSVLIAKIQALLRR---AYDFG 123

Query: 127 ETGPI-----RVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ET PI      + + G +  V Q +V  L + E RIL  LM N+GK V++ ++   ++  
Sbjct: 124 ETLPILEHHGAMLNTGDNTLVYQDQVISLTKNEYRILFTLMKNKGKVVSREKLMEQLWET 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V++N +  +I++LRKKL +      V +K  +GY I
Sbjct: 184 -DSFVDDNTLTVNITRLRKKLESAGLTQFVTTKFGIGYLI 222


>gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 229

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 4/163 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+   IR  S +P+I ++    L+  +   D G DD + KP    E+LAR+ A  RR +
Sbjct: 62  MEVCSQIREFSDIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHLRRDE 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + N  +T  + V  D    +  GE   L ++E  +L YL+ N G  V++ ++ + +
Sbjct: 122 GNLENENILKTADVEVKLDAHIVKRAGEEIELTKKEYDLLVYLIRNEGIVVSRDKLLNNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   E N+V+ +I  LR K+ +      + + R +GY +
Sbjct: 182 WG-YDYTGETNIVDVYIRYLRSKIDDPFSQKIIHTVRGVGYVL 223


>gi|293400684|ref|ZP_06644829.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305710|gb|EFE46954.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 226

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 4/132 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD GVDD V KP   RE+LARV A + R+ K      E G +R+    R+  ++ E+  L
Sbjct: 92  FDQGVDDYVTKPFSPRELLARVNAHMKRQSKRMEKDLEIGELRINLKRREALLKDELLTL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            ++E  +LEY ++N+   +++  I + I+G FD   +  +V+ H+ KLR KL+       
Sbjct: 152 TKKEFDLLEYFVSNKNIVLSRDAILNDIWG-FDYDGDTRIVDVHVFKLRTKLQG--SNVH 208

Query: 210 VDSKRFLGYSID 221
           + S R +GY ++
Sbjct: 209 IKSSRGVGYLLE 220


>gi|27376954|ref|NP_768483.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|12620551|gb|AAG60827.1|AF322012_132 ID284 [Bradyrhizobium japonicum]
 gi|27350096|dbj|BAC47108.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 229

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 12/171 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  L ++ R    +P + +S    L   +  F++G DD + KP+   E++AR+ AI 
Sbjct: 57  GDSLDWLKQLRREGRSMPAMMMSSLNDLSRRIATFNAGADDFLPKPVSIDELIARMRAIL 116

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR     +   T P+  F +       R   V G +  + RRE  ILE+L+   G+ V +
Sbjct: 117 RR-----STQMTAPVVTFGNLHFDPIARQVSVGGRILRIARREVCILEHLLNRAGRTVPR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  ++Y  FD+ V  N +E  I +LR  L        + + R +GY+++
Sbjct: 172 ASLEDSLYA-FDDEVSTNALEVGIYRLRAHLNQAGATLRIKTARGVGYTLE 221


>gi|291287141|ref|YP_003503957.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884301|gb|ADD68001.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 223

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 5/179 (2%)

Query: 45  DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D+  ++  L G KG + L++ R  + +S VP+I IS   + Q  ++  + G DD + KP 
Sbjct: 47  DIILLDLMLPGLKGMQFLQIVRNNKKYSGVPIIIISAKNTEQDIINGLEMGADDYLTKPF 106

Query: 104 HHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
             + ++A++ AI RR     ++      I + ++     V GE   L  +E  +L+ L+ 
Sbjct: 107 SIKILIAKINAILRRNPAIKSKVISINGINIDTNNYVVTVDGEEISLTNKEYELLQLLLK 166

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +   + QI +A++G ++  V    V++H+S LRKKL  +  F  + S   +GY  D
Sbjct: 167 HPKRVFTRNQILNAVWG-YESDVYTRTVDTHVSSLRKKLGTRGSF--IKSVPKIGYRAD 222


>gi|184201520|ref|YP_001855727.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201]
 gi|183581750|dbj|BAG30221.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201]
          Length = 226

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 110/232 (47%), Gaps = 22/232 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58
            ++++D   + D    L G      EGF+     + +++ A  D +  +  L+     G+
Sbjct: 4   ILMVEDEESLSDPLAYLLGR-----EGFDVTVVADGIRAVAEFDRAGADLVLLDLMLPGQ 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ + IR  S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR
Sbjct: 59  SGTEVCKQIRQRSNVPIIMLTAKDAEIDKVLGLELGADDYVTKPYSSRELVARIRAVLRR 118

Query: 119 L----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++  +    GP+R+  +     V GE   +P +E  +LE L+ N G+ + + Q+ 
Sbjct: 119 RAEPEELITSTVAAGPVRMDVERHVVHVDGEAVAMPLKEFELLEMLLRNAGRVLTRGQLI 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
             ++G  D   +   ++ H+    K+LR+K+  DP     + + R LGY  +
Sbjct: 179 DRVWG-SDYVGDTKTLDVHV----KRLRSKVEPDPSAPQHIVTVRGLGYKFE 225


>gi|300785477|ref|YP_003765768.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794991|gb|ADJ45366.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 13/193 (6%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL   G+      DG  LEG       E +++  R D+  ++  L G+     EL R+IR
Sbjct: 25  ALADAGFSVRSRPDGAELEG-------ELVRT--RPDLVVLDVLLPGRDG--FELLRVIR 73

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S   ++ ++    ++  L     G DD V KP    E++ARV A+ RR   +    E 
Sbjct: 74  RTSAAGVVMLTARDGVEDRLRGLGEGADDYVVKPFVLAELVARVTAVLRRTGRTRPAVEV 133

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +  +G           L   E ++L Y   +R + V+KTQ+ +A++G  D A   N
Sbjct: 134 GDLVIDVEGGRARYGDADVELTSTEWKVLLYFAQHRDRVVSKTQVLTAVWGYGDSA--PN 191

Query: 189 VVESHISKLRKKL 201
           +VE ++S LR+KL
Sbjct: 192 LVEVNVSTLRRKL 204


>gi|223043244|ref|ZP_03613291.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
 gi|222443455|gb|EEE49553.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
          Length = 219

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR +
Sbjct: 61  LEICRQIRQEQSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  +   I +  D     V G    L + E  +L  L  NR   + + QI   ++G 
Sbjct: 120 PQKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F+  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 179 FNSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218


>gi|56552283|ref|YP_163122.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761659|ref|ZP_04759746.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|56543857|gb|AAV90011.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373967|gb|EER63500.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 234

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL+  R   A  + P+I +S    +++ +     G DD + KP H  E++AR+ A+ 
Sbjct: 59  GYEVLKTLRT--AQVKTPIIVLSGIAEMESKVRALGFGADDYLTKPFHQEELIARIQAVV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR +  S +  +TG + V  D +  E+  +   L  +E  ILE L   +G  + K    +
Sbjct: 117 RRSQGHSQSIIKTGRLTVNLDSKTVEIDNKPVHLTGKEYAILELLSLRKGTTITKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  + KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFVCKLRKKL 201


>gi|238789085|ref|ZP_04632874.1| Two-component response regulator of virulence determinant [Yersinia
           frederiksenii ATCC 33641]
 gi|238722849|gb|EEQ14500.1| Two-component response regulator of virulence determinant [Yersinia
           frederiksenii ATCC 33641]
          Length = 223

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   +  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIDFPPFQIDLSRRELSVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL+ +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQAEHEGEVITTIRGQGYRFDAN 223


>gi|91978862|ref|YP_571521.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91685318|gb|ABE41620.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 221

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 16/214 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L + GYIA    DG           E W +    +  + I    + + + +  L R  
Sbjct: 18  RGLTEAGYIAECVADGE----------EAWFRGDTEDYAAIILDLGLPRLDGLTILKRWR 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
               + P++ ++   S    +D  D+G DD + KP    E+LAR+ +I RR     +   
Sbjct: 68  EGGRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSAGHASSVV 127

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           T G + +        V+G+  PL   E R+  YL+ +RG+ V++ ++  +IYG  D+A +
Sbjct: 128 TIGDVTLDERQMQVTVRGQPAPLSPLEYRLASYLVLHRGRVVSQFELSESIYGQ-DDAHD 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N +E  + ++RK    KLG + ++++R  GY +
Sbjct: 187 SNAIEVLVGRVRK----KLGPELIETRRGFGYIV 216


>gi|312887240|ref|ZP_07746844.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300552|gb|EFQ77617.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 225

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 4/168 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +L+  +    H+   ++ IS   SL   L   D G DD + KP H  E+ ARV A
Sbjct: 57  GSGMNILKYLK--ENHNPDGVLIISAKNSLDDKLAGLDLGADDYLVKPFHLSELKARVTA 114

Query: 115 IYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           I RR   S +   T   I +    ++ +V  ++    R+E  +L Y  AN+GK V+K  I
Sbjct: 115 IIRRKTFSGSNVLTFNEISIDLLAKEVKVNNQLVKFTRKEYALLLYFFANKGKVVSKNAI 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G   D A   + + SH+  +RKKL      D + +   +GY +
Sbjct: 175 AEHLWGDTADMADNFDFIYSHLKNVRKKLEEAGAKDYIKASYGMGYKL 222


>gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IR   A  ++P+I ++        +     G DD + KP    E+LAR+ A+ RR
Sbjct: 63  EVCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDAVLRR 122

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S+N  + G I + +D  + + +G V  L  RE ++L+ L  N+G  V++  
Sbjct: 123 SDMISASNTSDNIMQIGDIEIDTDKYEVKKKGTVIELTLREFKLLQTLAKNKGNLVSREV 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           + S ++G  +   +   ++ HI KLRKKL +   F   +++ R LGY I
Sbjct: 183 LLSEVWGCGNLG-DSRTLDVHIRKLRKKLEDNDKFPKYIETVRGLGYMI 230


>gi|255505684|ref|ZP_05347547.3| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
 gi|255266531|gb|EET59736.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
          Length = 248

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 22/219 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67
           +L K+GY      DG+S      LE    L  S R DV  ++  L G  G +VL+  R  
Sbjct: 38  SLKKEGYQTDCASDGIS-----GLE----LALSDRYDVILLDLMLPGLGGYQVLKQLR-- 86

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  ++  +I +S    L+  +   D G DD + KP   +E+ AR+ A+ RR      R E
Sbjct: 87  REKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRR-HGEVVRDE 145

Query: 128 TG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    IR F+             L  +E +++EYLM N  + +++++I   I+G +
Sbjct: 146 LVFQDLYLNIRTFT--LSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKIWG-Y 202

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  VE N V+ +IS LRKKL++      + + R +GY++
Sbjct: 203 DSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTL 241


>gi|325282380|ref|YP_004254921.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324314189|gb|ADY25304.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 229

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 6/169 (3%)

Query: 57  GEKVLELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           GE  L L R +R+HS++   P++ ++   +    ++  ++G DD + KP    E++ARV 
Sbjct: 55  GESGLGLLRRLRSHSELRRLPVLMLTARAAEAERVEGLETGADDYLTKPFGAAELVARVR 114

Query: 114 AIYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR +     +   GP+ +     D  + G+   L RRE  +L +L  N G+  ++T+
Sbjct: 115 ALLRRTQPEQPQQLSNGPLHIDLAAADARLNGQRLSLTRREFDLLTFLTQNAGRVYSRTE 174

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +   ++G  D    E  V+ H+++LR  L +  G    +++ R  GY +
Sbjct: 175 LLDRVWG-ADFLGGERTVDQHVTQLRSHLGDAPGAPTFLETVRGRGYRM 222


>gi|225628688|ref|ZP_03786722.1| two component response regulator [Brucella ceti str. Cudo]
 gi|256158058|ref|ZP_05455976.1| DNA-binding response regulator [Brucella ceti M490/95/1]
 gi|256252987|ref|ZP_05458523.1| DNA-binding response regulator [Brucella ceti B1/94]
 gi|260167009|ref|ZP_05753820.1| two component response regulator [Brucella sp. F5/99]
 gi|261220080|ref|ZP_05934361.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261756397|ref|ZP_06000106.1| response regulator receiver [Brucella sp. F5/99]
 gi|265996572|ref|ZP_06109129.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|225616534|gb|EEH13582.1| two component response regulator [Brucella ceti str. Cudo]
 gi|260918664|gb|EEX85317.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261736381|gb|EEY24377.1| response regulator receiver [Brucella sp. F5/99]
 gi|262550869|gb|EEZ07030.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 225

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D  ++          +G  ++  + L+       SAR D+  ++  L  G+G   
Sbjct: 3   IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHNYMESARYDLVLLDLMLPDGQG--- 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119

Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y
Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD  VE N +E H+S+LRK    KLG   +++ R +GY +
Sbjct: 180 S-FDTEVESNTMEVHVSRLRK----KLGHAIIETVRGIGYRL 216


>gi|170725025|ref|YP_001759051.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810372|gb|ACA84956.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 224

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
             P+I ++        ++ F++G DD + KP H +E+L R+ A+ +R     N       
Sbjct: 72  HTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLVRINALIQRAHGKANSPSKELS 131

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              I +  D +   VQ E F L   E R+L+  + +  K ++K Q+   +Y  FD+  E 
Sbjct: 132 YAGITLDEDQQSVMVQEEKFELTAMEFRLLKIFIMSPKKLLSKAQLTDKLYQ-FDDEKES 190

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           NVVE +++ LRK    KLG   ++++R  GY
Sbjct: 191 NVVEVYVTHLRK----KLGKTSIETRRGQGY 217


>gi|116695189|ref|YP_840765.1| response regulator [Ralstonia eutropha H16]
 gi|113529688|emb|CAJ96035.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 224

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 8/154 (5%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127
           A   VP++ ++   S    ++  D+G DD + KP    E+LAR+ A+ RR   +     +
Sbjct: 69  AQVGVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELLARIRALIRRAHGMPAPELQ 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            GP+R+        V G    L   E R+L+YLM + G  V+KT +   IY   FD   +
Sbjct: 129 CGPVRMNPRAGKVTVDGTPVALTSHEFRVLDYLMHHPGAIVSKTALTEHIYAQDFDR--D 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N +E  + +LR+    KLG D +++ R  GY +
Sbjct: 187 SNTIEVFVGRLRR----KLGVDVIETVRGQGYRM 216


>gi|228901257|ref|ZP_04065454.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228921393|ref|ZP_04084716.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228939836|ref|ZP_04102413.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228965658|ref|ZP_04126739.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228972725|ref|ZP_04133324.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979309|ref|ZP_04139646.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|229045415|ref|ZP_04192076.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|229110168|ref|ZP_04239744.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|229150932|ref|ZP_04279143.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|229190816|ref|ZP_04317809.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228592686|gb|EEK50512.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228632492|gb|EEK89110.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|228673360|gb|EEL28628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|228724953|gb|EEL76249.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|228780417|gb|EEM28647.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228786940|gb|EEM34920.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228794066|gb|EEM41588.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228819767|gb|EEM65815.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228838166|gb|EEM83484.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228858375|gb|EEN02838.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 214

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 56  FEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 115

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++
Sbjct: 116 DKNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVW 175

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   E  ++++HI  LRK    KL    + + + +GY ID
Sbjct: 176 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213


>gi|225848555|ref|YP_002728718.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644100|gb|ACN99150.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 222

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 3/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L +I  +  + P+I ++    ++  ++  D+G DD + KP    E+LAR+ A+ RR K +
Sbjct: 63  LIKIRNSSIKTPVIVLTAKDEVKDKIELLDAGADDYITKPFDFDELLARIRAVVRRDKDI 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++    G + +       +  G +  L  +E  +L Y + NRGK + K  + +A+Y L 
Sbjct: 123 KSSVISIGDLEIDLSKSTVKKSGNLIKLSSKEYLLLRYFIFNRGKILTKDNLINAVYDLS 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E +  N +E  IS+LR K+ ++     + S R LGY  D
Sbjct: 183 FE-LNSNALEVLISRLRSKIEDE-NHKYIKSIRGLGYIFD 220


>gi|163749364|ref|ZP_02156613.1| DNA-binding response regulator [Shewanella benthica KT99]
 gi|161331083|gb|EDQ02009.1| DNA-binding response regulator [Shewanella benthica KT99]
          Length = 224

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 83/154 (53%), Gaps = 17/154 (11%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P+I ++        ++ F++G DD + KP H +E+LAR+ A+ +R   ++ +A   P +
Sbjct: 73  TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLARIHALIQR---AHGKASL-PTK 128

Query: 133 VFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             S        + +   V+G+ F L   E R+L+  + +  K ++K+Q+   +Y  FD+ 
Sbjct: 129 ELSFSGVVLDENQQSVSVEGKSFELTAMEFRLLKIFLMSPKKLLSKSQLSDKLYQ-FDDE 187

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            E NVVE +++ LRK    KLG   ++++R  GY
Sbjct: 188 KESNVVEVYVTHLRK----KLGKTTIETRRGQGY 217


>gi|330719832|gb|EGG98328.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC2047]
          Length = 227

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 90/162 (55%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL R +RA+ + +P++ ++   + Q  ++  ++G DD + KP H  E+LAR+ A+ RR 
Sbjct: 60  IELIRQLRANDRSMPVLILTARDNWQDKVEGLEAGADDYLAKPFHMEELLARLNALIRRA 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +++  + G +++    +    + +   L   E ++LEYLM N  K ++KT++   IY
Sbjct: 120 AGKADSTIKIGYLQLDIRTQQVLAREQQVSLTAYEYKVLEYLMLNPQKVISKTELTEHIY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D   + NV+E  I +LRKKL      +P+++ R  GY +
Sbjct: 180 AQ-DYDRDSNVIEVFIGRLRKKLDPDNLHNPIETLRGRGYRL 220


>gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 229

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 14/169 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRSLRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRQGD 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++ +     GP+R+  D     V+G+   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 VEELESAVLAAGPVRMDVDRHIVAVRGQQVQLPLKEFELLEVLLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
           +G  D   +   ++ H+ +LR K+ +    DP + +     R LGY  D
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKVES----DPSNPRCILTVRGLGYKFD 225


>gi|53712868|ref|YP_098860.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60681087|ref|YP_211231.1| putative two-component response regulator [Bacteroides fragilis
           NCTC 9343]
 gi|253563148|ref|ZP_04840605.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|265762967|ref|ZP_06091535.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|52215733|dbj|BAD48326.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60492521|emb|CAH07292.1| putative two-component response regulator [Bacteroides fragilis
           NCTC 9343]
 gi|251946924|gb|EES87206.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|263255575|gb|EEZ26921.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|301162575|emb|CBW22122.1| putative two-component response regulator [Bacteroides fragilis
           638R]
          Length = 229

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  L +  +  +QVP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ 
Sbjct: 61  GFKMANLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120

Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR   S+   E  P ++           +   + GE  PL ++E  IL  L+ N+G+  +
Sbjct: 121 RRTATSD--TEKAPEQLCYQSLVIDITKKKVSIDGEEVPLTKKEFEILFLLLQNKGRVFS 178

Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           +  I S I+   DE  V +  ++ +I++LRKK+
Sbjct: 179 REDILSRIWS--DEVYVLDRTIDVNITRLRKKI 209


>gi|312144080|ref|YP_003995526.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904731|gb|ADQ15172.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 229

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+   IR  S +P+I ++    L+  +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 62  IEVCNKIREFSDLPIIMLTAKSELEDKVAGLDTGADDYLTKPFEIEELLARIRALLRRDK 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S N      I V  D    +  G+   L ++E  +L YL+ N G  V++ ++ + +
Sbjct: 122 GTIESANILNISDIEVNLDAHQVKRAGQKIELTKKEYDLLVYLIKNEGIVVSRDKLLNNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G ++   E N+V+ +I  LR K+        + + R +GY
Sbjct: 182 WG-YNYTGETNIVDVYIRYLRSKIDEPFEEKLIHTVRGVGY 221


>gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 242

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 90/159 (56%), Gaps = 7/159 (4%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNN 124
           R ++ VP++ ++    +   +   D+G DD + KP   +E+++R+ AI+RR++    SN+
Sbjct: 71  RQNNAVPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFRRVQALPGSND 130

Query: 125 RA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E G ++V+ + R+  ++G++  L  +E  +L +L  +RGK +++ Q+   ++  + 
Sbjct: 131 TVVYEYGRLKVYPEQREVRIEGKLIELTPKEFELLVFLCRHRGKVLSRQQLLHGVWD-YH 189

Query: 183 EAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              +  +V+ HIS LR K+ +N    + + + R +GY +
Sbjct: 190 FLGDTRIVDVHISHLRDKIEKNARTPEYIITVRNVGYKL 228


>gi|303240446|ref|ZP_07326963.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592011|gb|EFL61742.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 232

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 20/201 (9%)

Query: 10  LVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           LVK+GY +  F D    LE FN    +  +      ++                L   IR
Sbjct: 24  LVKEGYEVETFNDGRKILEAFNKRPADMLIIDIMMPELDG------------FSLCSSIR 71

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNR 125
             S VP+I +S   +    +     G DD + KP    E++AR+ +I+RR+   K+ N +
Sbjct: 72  EKSNVPVIIVSAKDTETDKIAGLTLGSDDYLTKPFSPMELIARIKSIFRRIEMDKIKNEK 131

Query: 126 AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +      + + SD +  E+  +   L   E  +L YL  N+ K V+++++   ++G FD
Sbjct: 132 VQKIKIADVVINSDKKQAEINDKNIGLTNMEFALLYYLAVNKNKAVSRSELLDKVWG-FD 190

Query: 183 EAVEENVVESHISKLRKKLRN 203
             VE    +  I ++RKKL +
Sbjct: 191 NEVETRATDDMIKRVRKKLTD 211


>gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 222

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 16/198 (8%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+ + A F +DG   ++ F +  F+  L      D+S         G  VL   + IR
Sbjct: 21  LEKNNFDAFFAEDGNTGIDMFKNNSFDIVLLDVMLPDMS---------GWNVL---KTIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126
             S++P++ I+        L  F+ G DD V KP   RE++AR+ AI  R K   S+N  
Sbjct: 69  ESSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAILSRSKWAESDNLI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               I + +D R  +V G+   L  +E  +L  L  N GK +++ +  + ++G ++   +
Sbjct: 129 SFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNVVWG-YEFFGD 187

Query: 187 ENVVESHISKLRKKLRNK 204
              V++HI +LR+KL +K
Sbjct: 188 LRTVDTHIKQLREKLGDK 205


>gi|103486293|ref|YP_615854.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976370|gb|ABF52521.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 221

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R  R     P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR    
Sbjct: 63  LDRWRREKRNFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           +++    G +R+ +      + GE   L  +E ++L YL+ ++GK V++T++   IY   
Sbjct: 123 ASSELTAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQD 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + N +E  ++++RK    KLG D + + R LGY +D
Sbjct: 183 FDR--DSNTIEVFVTRIRK----KLGADIITTIRGLGYQLD 217


>gi|330990821|ref|ZP_08314777.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp.
           SXCC-1]
 gi|329762261|gb|EGG78749.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp.
           SXCC-1]
          Length = 223

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 20  GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQVPLIGI 78
           G DG +++ F +LE      ++   D   ++  L  G G  +L   R  R  S + ++  
Sbjct: 21  GLDGHAVDWFTTLEDARAAMATVDYDFMLLDLGLPDGSGRDLLREVR--RTSSDIAILIT 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSD 136
           +    +   +     G DD + KP    E++AR+AA+ RR       A    G I +  +
Sbjct: 79  TAEDQISDRIAGLSEGADDYIVKPYDLNELVARIAAVARRYASPRRHAHCRVGEITIDRE 138

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R     GE   L  RE  I+E L  + G+  ++ QI +A+Y L D  V+ N VE  IS+
Sbjct: 139 NRSVSRDGERLDLTAREWSIMELLSRSPGRIYSRQQIDTALYAL-DRDVDSNTVEVFISR 197

Query: 197 LRKKLRNKLGFDPVDSKRFLGYSID 221
           LR+K+ N +    + + R  GY +D
Sbjct: 198 LRRKVGNTV----IRTIRGRGYCLD 218


>gi|317404886|gb|EFV85256.1| winged helix family Two component Transcriptional regulator
           [Achromobacter xylosoxidans C54]
          Length = 221

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 103/220 (46%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +     A  G  G  ++   SL   +    ++      ++   +  G+ V 
Sbjct: 3   ILLVEDDASIASAIQAGLGLQGFVVDAVGSLRQADLAVGTSHASACVLD-LCLPDGDGVT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L +       +P++ ++   S+   +    +G DD V KP    E+ AR+ A+ RR   
Sbjct: 62  LLAKWRARRQDLPVLVLTARSSIAQRVAALRAGADDYVLKPFDLDELAARLQALIRRAAG 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +R + G + ++    +  + G    L RRE  +L+ L+ + G+ +   Q+  ++YG 
Sbjct: 122 HSADRIDHGRLTLYLSRGEVLLDGARVTLQRRELALLKTLLQHPGQILTMDQLRDSLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD+ VE N V  HI KLR+    KLG   +++ R  GY +
Sbjct: 181 FDDRVESNAVNVHIHKLRR----KLGAGLIETVRGWGYRL 216


>gi|313888836|ref|ZP_07822497.1| putative response regulator ArlR [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845205|gb|EFR32605.1| putative response regulator ArlR [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 222

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 18/170 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ ++ R  S +P+I +S        +   + G DD + KP     + A++   + ++ 
Sbjct: 63  LEIIKLTRQTSSIPIIVLSAIDLESYIISAINLGADDYLTKPFSLGILEAKIKRAFEKIV 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQI 173
            S    +  P +   DG D      +F        L R E +IL YL+ N+ + +AK  +
Sbjct: 123 SS----DLNPYK--KDGLDFNFNKNIFYVDNKNIDLTRTETKILYYLIKNKSQVIAKELL 176

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           F  ++G+ DE +++N +  +IS++R KL+    +DP+++   +GY   WN
Sbjct: 177 FDFVWGIDDEYIDQNTLSVNISRIRNKLK---PYDPIETVFGVGYK--WN 221


>gi|229161599|ref|ZP_04289579.1| Two-component response regulator vanRB [Bacillus cereus R309803]
 gi|228621844|gb|EEK78690.1| Two-component response regulator vanRB [Bacillus cereus R309803]
          Length = 214

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 56  FEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 115

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++
Sbjct: 116 DKNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVW 175

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   E  ++++HI  LRK    KL    + + + +GY ID
Sbjct: 176 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213


>gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
 gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
          Length = 229

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 24/219 (10%)

Query: 10  LVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+G+ + + GD   +LE F S            E    +   L+  G    ++ + +R
Sbjct: 21  LRKEGFEVGVAGDGPSALESFES------------EGADIVLLDLMLPGMSGTDVCKRLR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +      
Sbjct: 69  MTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAEAEAEPVE 128

Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E+GP+R+  +     V+G    LP +E  +LEYL+ N G+ + + Q+   ++G  
Sbjct: 129 EIGVLESGPVRMDIERHTVMVRGAAVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRVWG-S 187

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGY 218
           D   +   ++ H+ +LR K+    G  PV   + R LGY
Sbjct: 188 DYVGDTKTLDVHVKRLRSKIETDPG-KPVHLVTVRGLGY 225


>gi|210617395|ref|ZP_03291559.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787]
 gi|210149325|gb|EEA80334.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787]
          Length = 246

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +R    +  ++ +S    +   ++  D+G +D + KP H +E+ ARV ++ RR 
Sbjct: 80  MEILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRRK 139

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N   E   IR     R    +     L R+E  ILEYL+ N+G+ V++ ++   ++
Sbjct: 140 FIQKNVCLECNGIRFDIRERVAYAEENPVALTRKENGILEYLLLNQGRPVSQEELIEHVW 199

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D +V      +  H+S LR+KL+  LG+DP+ ++   GY I
Sbjct: 200 ---DSSVNSFSGSIRVHMSSLRRKLKAGLGYDPIVNRIGEGYKI 240


>gi|170751941|ref|YP_001758201.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658463|gb|ACB27518.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 233

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G    L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
             DE  E  +++  I KLRKKL N
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203


>gi|308068988|ref|YP_003870593.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858267|gb|ADM70055.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 222

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 7/195 (3%)

Query: 31  SLEFE--EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           ++E+E  + L+S+  E+   I   L+  G   +E+ R IR   Q P+I ++    +   +
Sbjct: 29  TVEYEGRKGLESALSEEWDIILLDLMLPGINGIEVCRRIRKTKQTPIIMLTARDGVMDKV 88

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGE 145
              DSG DD + KP    E+LAR+ ++ RR   ++ S      G + + S+ R      +
Sbjct: 89  MGLDSGADDYIPKPFAIEELLARMRSLLRRSGFVEDSKQITYNGLV-LDSEARILTKDQQ 147

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           +  L +RE  +L  LM N G+ + + ++   I+G +D  VE NVV+ +I  LR K+    
Sbjct: 148 IIELTKREFDLLSILMHNIGRVMTRERLLELIWG-YDSEVETNVVDVYIRYLRSKIDEPG 206

Query: 206 GFDPVDSKRFLGYSI 220
               + + R LGY I
Sbjct: 207 EASFIQTLRGLGYVI 221


>gi|300689759|ref|YP_003750754.1| response regulator, cheY family [Ralstonia solanacearum PSI07]
 gi|299076819|emb|CBJ49429.1| putative response regulator, CheY family [Ralstonia solanacearum
           PSI07]
          Length = 224

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 4/147 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPI 131
           VP++ ++    +   +    +G DD + KP   RE++AR+  + RR   +N    + G +
Sbjct: 73  VPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNTPANAVELQCGDL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              S  R   + G    LP RE  +LE LM   G+ V+K  + + ++GL D+A  E  +E
Sbjct: 133 SYHSGSRTFALAGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFGLEDDASPE-AIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +I +LRKKL +      + + R LGY
Sbjct: 192 IYIHRLRKKLEHSAA--TIVTLRGLGY 216


>gi|121601947|ref|YP_989297.1| cell cycle transcriptional regulator CtrA [Bartonella bacilliformis
           KC583]
 gi|120614124|gb|ABM44725.1| cell cycle transcriptional regulator CtrA [Bartonella bacilliformis
           KC583]
          Length = 233

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL   R+  A  + P++ +S   S++  +  F  G DD + KP H  E++AR+ A+ 
Sbjct: 59  GYDVLRTLRL--AKIKTPVLILSGMASIEDKVRGFGFGADDYMTKPFHKDELIARIHAVV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +   TG + V  D +  EV G    L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVIVTGDLIVNLDTKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|300022650|ref|YP_003755261.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524471|gb|ADJ22940.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 223

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +LE  R  R+  ++P+I ++        +   D+G DD + KP H  E+LARV A  
Sbjct: 59  GISILEQWR--RSDRKMPVILLTARDRWSDKVTGMDAGADDYLAKPFHMEELLARVRAQI 116

Query: 117 RRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR      +  E GPIR+ +        G    L   E R+L YLM + G+ V++T++  
Sbjct: 117 RRASGHVKSEIECGPIRLDTKSARVTCDGLPVKLTSHEFRLLAYLMHHNGRVVSRTELVE 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y   FD   + N +E  I +LRKK+      D + + R LGY +
Sbjct: 177 HLYDQDFDR--DSNTIEVFIGRLRKKIPG----DVIQTVRGLGYRM 216


>gi|107103873|ref|ZP_01367791.1| hypothetical protein PaerPA_01004944 [Pseudomonas aeruginosa PACS2]
 gi|254238491|ref|ZP_04931814.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa C3719]
 gi|254244323|ref|ZP_04937645.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa 2192]
 gi|313109760|ref|ZP_07795699.1| two-component response regulator [Pseudomonas aeruginosa 39016]
 gi|126170422|gb|EAZ55933.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa C3719]
 gi|126197701|gb|EAZ61764.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa 2192]
 gi|310882201|gb|EFQ40795.1| two-component response regulator [Pseudomonas aeruginosa 39016]
          Length = 221

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 12/135 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
            DSG DD + KP    E+ ARV A+ RR   +  RA      G +R+        + G+ 
Sbjct: 91  LDSGADDYLTKPFDLDELQARVRALTRR---TTGRALPQLVHGELRLDPATHQVTLSGQA 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  RE  +L  L+ N GK +++ Q+  ++YG +   VE N +E H+  LR+KL N+L 
Sbjct: 148 VELAPREYALLRLLLENSGKVLSRNQLEQSLYG-WSGDVESNAIEVHVHHLRRKLGNQL- 205

Query: 207 FDPVDSKRFLGYSID 221
              + + R +GY ID
Sbjct: 206 ---IRTVRGIGYGID 217


>gi|22125688|ref|NP_669111.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis KIM 10]
 gi|108807885|ref|YP_651801.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis
           Antiqua]
 gi|108812159|ref|YP_647926.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis
           Nepal516]
 gi|149366402|ref|ZP_01888436.1| response regulator protein [Yersinia pestis CA88-4125]
 gi|165925538|ref|ZP_02221370.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938457|ref|ZP_02227014.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008412|ref|ZP_02229310.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210640|ref|ZP_02236675.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401723|ref|ZP_02307214.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421718|ref|ZP_02313471.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426336|ref|ZP_02318089.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469318|ref|ZP_02334022.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis FV-1]
 gi|218928770|ref|YP_002346645.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis CO92]
 gi|229841621|ref|ZP_04461779.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843738|ref|ZP_04463881.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229902480|ref|ZP_04517599.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Nepal516]
 gi|270490340|ref|ZP_06207414.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504168|ref|YP_003568230.1| response regulator protein [Yersinia pestis Z176003]
 gi|21958603|gb|AAM85362.1|AE013782_3 transcriptional regulatory protein [Yersinia pestis KIM 10]
 gi|1621018|emb|CAA70004.1| PhoP protein [Yersinia pestis]
 gi|108775807|gb|ABG18326.1| response regulator protein [Yersinia pestis Nepal516]
 gi|108779798|gb|ABG13856.1| response regulator protein [Yersinia pestis Antiqua]
 gi|115347381|emb|CAL20279.1| response regulator protein [Yersinia pestis CO92]
 gi|149290776|gb|EDM40851.1| response regulator protein [Yersinia pestis CA88-4125]
 gi|165913572|gb|EDR32192.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922647|gb|EDR39798.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992794|gb|EDR45095.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207820|gb|EDR52300.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960203|gb|EDR56224.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048828|gb|EDR60236.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054691|gb|EDR64495.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680526|gb|EEO76623.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Nepal516]
 gi|229689346|gb|EEO81409.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229694084|gb|EEO84132.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|262362285|gb|ACY59006.1| response regulator protein [Yersinia pestis D106004]
 gi|262366219|gb|ACY62776.1| response regulator protein [Yersinia pestis D182038]
 gi|270338844|gb|EFA49621.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294354627|gb|ADE64968.1| response regulator protein [Yersinia pestis Z176003]
 gi|320014777|gb|ADV98348.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 223

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D AL++        + G  ++   ++ E + +LQ  A  D++ I+  L   GE  L
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHA-PDIAIIDLGL--PGEDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR +
Sbjct: 61  SLIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNI 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 -DAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRSQGYRFDVN 223


>gi|331088794|ref|ZP_08337704.1| hypothetical protein HMPREF1025_01287 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330407317|gb|EGG86820.1| hypothetical protein HMPREF1025_01287 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 226

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 5/205 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           +F+L DD+ L K   IAL  D+      +  LE  +  Q   + D+  ++  L  G G  
Sbjct: 9   IFLLEDDKILSKGISIALKKDEHTVTAVYGYLEALQQYQKQ-KYDLFLLDINLPDGNG-- 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE  + IR  S+ P++ ++   + +  L+ F  G DD ++KP     +  +V A+ +R 
Sbjct: 66  -LEFCKKIRETSETPVLFLTANDTEEDMLEGFGVGCDDYISKPFSIEVLRKKVLAVLKRT 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   R +   + +  +     ++G+   L   E ++L YLM NRG+ V K  +   ++ 
Sbjct: 125 GIGKFRMKYRDLELDKEKCVVLMKGQEIHLTSTEYKLLLYLMENRGRVVTKAMLLEQLWD 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
           +    V++N V  +I +LR+KL ++
Sbjct: 185 IDGNFVDDNTVRVNIKRLRQKLHDE 209


>gi|153008899|ref|YP_001370114.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|223635103|sp|A6WZ81|CTRA_OCHA4 RecName: Full=Cell cycle response regulator CtrA
 gi|151560787|gb|ABS14285.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 232

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 3/142 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             DE  E  +++  I KLRKKL
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKL 201


>gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L]
 gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L]
          Length = 229

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 77  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 137 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 195

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE +I  LRKKL    G+   + + R +GY
Sbjct: 196 VEVYIHHLRKKL-EPFGYQKDIQTVRGIGY 224


>gi|56479487|ref|YP_161076.1| two component response regulator [Aromatoleum aromaticum EbN1]
 gi|56315530|emb|CAI10175.1| Two component response regulator [Aromatoleum aromaticum EbN1]
          Length = 220

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 14/183 (7%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           DV  ++A ++  G  +++   +++    A   +P++ ++   +    +   D+G DD + 
Sbjct: 41  DVEPLDAVVLDLGLPLMDGITVLKKWRAAGRTMPVLILTARDNWHEKVAGIDAGADDYLT 100

Query: 101 KPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           KP H  E+LAR+ A+ RR    +  AE   GP+ + +      V G+   L   E R+L+
Sbjct: 101 KPFHMEELLARLRALIRRAG-GHASAELACGPVLLDTRAGRVSVNGDAVNLTSHELRVLD 159

Query: 159 YLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           YLM ++G+ V+++ +   IY   FD   + N +E  I +LRKKL   +    +++ R LG
Sbjct: 160 YLMHHQGEIVSRSDLTEHIYAQDFDR--DSNTIEVFIGRLRKKLPAGM----IETVRGLG 213

Query: 218 YSI 220
           Y +
Sbjct: 214 YRM 216


>gi|226948577|ref|YP_002803668.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841560|gb|ACO84226.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 6/139 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR  S +P+I ++   S    ++  D G DD + KP   RE+++RV AI RR   SN   
Sbjct: 67  IRKTSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRR--TSNDCD 124

Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N  ++  I  + +    E  G+   L + E ++L+Y M N  K ++K QI   ++ +  
Sbjct: 125 FNIIQSKDIVFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIENLWNIDG 184

Query: 183 EAVEENVVESHISKLRKKL 201
           E + EN V  +I ++R+K+
Sbjct: 185 EFINENTVAVNIRRIREKI 203


>gi|206971770|ref|ZP_03232719.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218897743|ref|YP_002446154.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|229179004|ref|ZP_04306361.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|206733155|gb|EDZ50328.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218541190|gb|ACK93584.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|228604372|gb|EEK61836.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|326940485|gb|AEA16381.1| two-component response regulator VanRB [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 221

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 20/215 (9%)

Query: 10  LVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L+   Y  +   DG+  +  FN   F+  L      +++              E+ ++IR
Sbjct: 23  LMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNG------------FEVSKMIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRA 126
           + S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   K  NN  
Sbjct: 71  SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNVNNHL 130

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D   E
Sbjct: 131 IFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YDYFGE 189

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++++HI  LRK    KL    + + + +GY ID
Sbjct: 190 TRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 220


>gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 226

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 10/159 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +G  D   +   ++ H+ +LR K+    G     + RFL
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG-----APRFL 214


>gi|28209933|ref|NP_780877.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28202368|gb|AAO34814.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 238

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 65/141 (46%), Gaps = 7/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I IS  P     +     G DD + KP    E+LARV +  RR  V +++ 
Sbjct: 75  IRKFKTMPIIVISAKPGQDIKIKVLKLGADDFICKPFDTNEVLARVESQLRRYTVFSSKN 134

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +   I  + D        +  V+GE   L  RE  ILE LM+N+ K   K  +F   +  
Sbjct: 135 KEKNILTYKDLSLNKETLEVAVKGEYISLTAREFTILELLMSNQKKVFTKANLFEHAWNE 194

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D   + N V  HIS +R KL
Sbjct: 195 -DFFCDHNTVNVHISNIRSKL 214


>gi|125973317|ref|YP_001037227.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256006166|ref|ZP_05431082.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417519|ref|ZP_06248539.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125713542|gb|ABN52034.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255989869|gb|EEU00035.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281408921|gb|EFB39179.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316940451|gb|ADU74485.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 225

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130
            P++ ++   S++  ++  DSG DD + KP    E+LAR+ A+ RR      N     G 
Sbjct: 73  TPVLILTAKDSVKNRVEGLDSGADDYLTKPFSKSELLARIRALGRRQSEIFVNEEINIGN 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +       + +V G+   L  +E +ILE L+ N+   V+K Q+   ++G F   +E N +
Sbjct: 133 MSFNCMKGEIKVNGQTIKLTSKESQILEILIKNKNIVVSKEQLLEKVWG-FQTDIELNNI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++S LRKKL        +++ R  GY +
Sbjct: 192 EVYLSYLRKKLSKLDCGIVIETIRARGYCL 221


>gi|319406806|emb|CBI80439.1| cell cycle transcriptional regulator CtrA [Bartonella sp. 1-1C]
          Length = 233

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 21/191 (10%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           YI   G++G+ L      +++  L      D+S  E        + L L +I     + P
Sbjct: 28  YITDLGEEGIDLGKL--YDYDIILLDLNLPDMSGYEVL------RTLRLEKI-----KTP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130
           ++ +S    ++  +  F  G DD + KP H  E++AR+ A+ RR   S   A+    TG 
Sbjct: 75  VLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRR---SKGHAQSVIITGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  E+ G    L  +E ++LE L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 LTVNLDAKTVEIAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKL 201
           +  I KLRKKL
Sbjct: 191 DVFICKLRKKL 201


>gi|117918698|ref|YP_867890.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611030|gb|ABK46484.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 220

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 85/150 (56%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++   +    +D   +G DD + KP H  E+LAR+ A+ RR    ++N  +   +
Sbjct: 73  MPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHFGRADNLLQHAGV 132

Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
            +  D +     +G+V  L + E R+L YLMAN  K V+K+++   IY   ++  + NV+
Sbjct: 133 SLDVDKQAVTNAEGDVIELTKIEYRLLHYLMANPTKIVSKSELSERIYE-EEQIKDSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E +I++LR+    +LG D ++++R  GY +
Sbjct: 192 EVYINRLRQ----RLGKDYIETRRGQGYRL 217


>gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 17/216 (7%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L  +GY  L  ++G   LE FN+            +D+S I   ++        L + IR
Sbjct: 21  LENNGYEVLVAENGKAGLEYFNN----------NNKDISIILLDIMLPDISGWSLLKTIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNR 125
             S+VP++ I+        L  F+ G DD V KP   +E++ARV AI  R       + +
Sbjct: 71  EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGASEEDGK 130

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++G +D   
Sbjct: 131 TEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG-YDFYG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 190 DLRTVDTHIKQLREKLGEKRKL--IKTVWGIGYKLD 223


>gi|196046810|ref|ZP_03114032.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022345|gb|EDX61030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 223

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 EIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|53721734|ref|YP_110719.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52212148|emb|CAH38165.1| response regulator protein [Burkholderia pseudomallei K96243]
          Length = 223

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +RA  + VP++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 60  LDVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   + R E GP+   S  R   +  +   L  RER +LE L+   G+ + K  +   I+
Sbjct: 120 LGHEHGRVECGPLAFDSVDRIFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL DE+V  + +E ++ +LRKKL    G   V + R LGY ++
Sbjct: 180 GL-DESVNADAIEIYVHRLRKKLEGS-GVAIV-TLRGLGYLLE 219


>gi|89069529|ref|ZP_01156873.1| DNA-binding response regulator CtrA [Oceanicola granulosus
           HTCC2516]
 gi|89044864|gb|EAR50954.1| DNA-binding response regulator CtrA [Oceanicola granulosus
           HTCC2516]
          Length = 238

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 3/143 (2%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R A  + P++ ++     ++ L  F  G DD + KP H  E++AR+ AI RR 
Sbjct: 60  LEVLRQLRLARIETPILVLTGDDGTESKLRSFGFGADDYLTKPFHREELVARIHAIIRRS 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K  + +  +TG I V  D +  EV G    L  +E ++ E L   +G  + K    + +Y
Sbjct: 120 KGHAQSIIKTGRILVNLDAKTVEVDGVPVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G  DE  E  +++  I KLRKKL
Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKL 201


>gi|291037441|ref|ZP_06568405.1| two component response regulator KdpE [Gluconacetobacter xylinus
           NBRC 3288]
          Length = 223

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 20  GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIGI 78
           G DG +++ F +LE      ++   D   ++  L  G G  +L   R  R  S + ++  
Sbjct: 21  GLDGHAVDWFTTLEDARAAMATVDYDFILLDLGLPDGSGRDLLREVR--RTSSDIAILIT 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSD 136
           +    +   +     G DD + KP    E++AR+AA+ RR      +A    G I +  +
Sbjct: 79  TAEDQISDRIAGLSEGADDYIVKPYDLNELVARIAAVARRYASPRRQAHCRVGEITIDRE 138

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R     GE   L  RE  I+E L  + G+  ++ QI + +Y L D  V+ N VE  IS+
Sbjct: 139 NRSVSRDGERLDLTAREWSIMELLSRSPGRIYSRQQIDTVLYAL-DREVDSNTVEVFISR 197

Query: 197 LRKKLRNKLGFDPVDSKRFLGYSID 221
           LR+KL N +    + + R  GY +D
Sbjct: 198 LRRKLGNNV----IRTIRGRGYCLD 218


>gi|170745397|ref|YP_001766854.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658998|gb|ACB28052.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 233

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G    L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
             DE  E  +++  I KLRKKL N
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203


>gi|120600316|ref|YP_964890.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291755|ref|YP_001182179.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120560409|gb|ABM26336.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145563445|gb|ABP74380.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319424991|gb|ADV53065.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 224

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 79/150 (52%), Gaps = 9/150 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128
            P+I ++        ++ F++G DD + KP H +E+LAR+ A+    + RL   + +   
Sbjct: 73  TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRLNTPSKQLTY 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +    +  +V   ++ L   E R+L+  + +  K ++K Q+   +Y  FD+  E N
Sbjct: 133 GGVTLDETEQTVKVADHLYELTAMEFRLLKIFLMSPKKLLSKAQLTDKLYQ-FDDEKESN 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VVE +++ LRK    KLG   ++++R  GY
Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|88811133|ref|ZP_01126389.1| DNA-binding response regulator [Nitrococcus mobilis Nb-231]
 gi|88791672|gb|EAR22783.1| DNA-binding response regulator [Nitrococcus mobilis Nb-231]
          Length = 224

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 15/165 (9%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R  RA    +P++ ++   +    +D F +G DD + KP H  E+LARV A+ RR 
Sbjct: 60  LEMLRGWRAAGNPIPVLILTARDAWYERVDGFKAGADDYLGKPFHTEELLARVGALLRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQI 173
             ++ +  +GP++      D E Q  + P      L   E R+L Y M N  + ++K ++
Sbjct: 119 --AHRQQPSGPLQSAGLVLDEEEQKVILPDQQPVRLTATEFRLLRYFMLNPQRLLSKARL 176

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +Y   D   + NV+E ++++LR+    KLG D ++++R  GY
Sbjct: 177 TEHVYA-EDGDPDSNVLEVYVNRLRR----KLGSDYIETRRGQGY 216


>gi|75763337|ref|ZP_00743078.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228908456|ref|ZP_04072299.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|74489174|gb|EAO52649.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228851247|gb|EEM96058.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
          Length = 228

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 20/215 (9%)

Query: 10  LVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L+   Y  +   DG+  +  FN   F+  L      +++              E+ ++IR
Sbjct: 30  LMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNG------------FEVSKMIR 77

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRA 126
           + S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   K  NN  
Sbjct: 78  SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNVNNHL 137

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D   E
Sbjct: 138 IFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YDYFGE 196

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++++HI  LRK    KL    + + + +GY ID
Sbjct: 197 TRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 227


>gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 228

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 8/173 (4%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+  ++ ++S +   L+  G    E+ + +R  S VP+I ++   +    +   + G DD
Sbjct: 38  LREFSQHEISIVLLDLMLPGMSGTEVCKKLRQSSTVPIIMVTARDTEMDKIVGLELGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNR-------AETGPIRVFSDGRDPEVQGEVFPLP 150
            V KP   RE++AR+ A+ RR + ++          E G +R+  +     V G+   +P
Sbjct: 98  YVTKPYSARELIARIRAVLRRGRGTSGPDQFDDEILEVGNVRMDVERHSVWVDGKEISMP 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +E  +LEYLM N G+ + + Q+   ++GL D   +   ++ H+ +LR K+ +
Sbjct: 158 LKEFDLLEYLMRNEGRVLTRGQLIDRVWGL-DYVGDTKTLDVHVKRLRSKVED 209


>gi|17989359|ref|NP_541992.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62317173|ref|YP_223026.1| two component response regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269154|ref|YP_418445.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|148557916|ref|YP_001257276.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|189022433|ref|YP_001932174.1| Response regulator receiver [Brucella abortus S19]
 gi|225686080|ref|YP_002734052.1| DNA-binding response regulator [Brucella melitensis ATCC 23457]
 gi|237816732|ref|ZP_04595724.1| two component response regulator [Brucella abortus str. 2308 A]
 gi|254691342|ref|ZP_05154596.1| DNA-binding response regulator [Brucella abortus bv. 6 str. 870]
 gi|254698453|ref|ZP_05160281.1| DNA-binding response regulator [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254699520|ref|ZP_05161348.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513]
 gi|254706226|ref|ZP_05168054.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10]
 gi|254711480|ref|ZP_05173291.1| DNA-binding response regulator [Brucella pinnipedialis B2/94]
 gi|254731901|ref|ZP_05190479.1| DNA-binding response regulator [Brucella abortus bv. 4 str. 292]
 gi|256015015|ref|YP_003105024.1| two component response regulator [Brucella microti CCM 4915]
 gi|256029890|ref|ZP_05443504.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1]
 gi|256043150|ref|ZP_05446091.1| DNA-binding response regulator [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111861|ref|ZP_05452826.1| DNA-binding response regulator [Brucella melitensis bv. 3 str.
           Ether]
 gi|256256527|ref|ZP_05462063.1| DNA-binding response regulator [Brucella abortus bv. 9 str. C68]
 gi|256262794|ref|ZP_05465326.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|260544408|ref|ZP_05820229.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260564371|ref|ZP_05834856.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260756952|ref|ZP_05869300.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759674|ref|ZP_05872022.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260762916|ref|ZP_05875248.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882765|ref|ZP_05894379.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261313668|ref|ZP_05952865.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261319091|ref|ZP_05958288.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261749975|ref|ZP_05993684.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|265986906|ref|ZP_06099463.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265989580|ref|ZP_06102137.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993318|ref|ZP_06105875.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|294853244|ref|ZP_06793916.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297249884|ref|ZP_06933585.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306840921|ref|ZP_07473664.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|17985230|gb|AAL54256.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62197366|gb|AAX75665.1| two component response regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82939428|emb|CAJ12388.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|148369201|gb|ABQ62073.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|189021007|gb|ACD73728.1| Response regulator receiver [Brucella abortus S19]
 gi|225642185|gb|ACO02098.1| DNA-binding response regulator [Brucella melitensis ATCC 23457]
 gi|237787545|gb|EEP61761.1| two component response regulator [Brucella abortus str. 2308 A]
 gi|255997675|gb|ACU49362.1| two component response regulator [Brucella microti CCM 4915]
 gi|260097679|gb|EEW81553.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260152014|gb|EEW87107.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260669992|gb|EEX56932.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260673337|gb|EEX60158.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260677060|gb|EEX63881.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872293|gb|EEX79362.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261298314|gb|EEY01811.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261302694|gb|EEY06191.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261739728|gb|EEY27654.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262764188|gb|EEZ10220.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263000249|gb|EEZ12939.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263092602|gb|EEZ16837.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|264659103|gb|EEZ29364.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294818899|gb|EFG35899.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297173753|gb|EFH33117.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306289073|gb|EFM60333.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|326410408|gb|ADZ67472.1| Response regulator receiver [Brucella melitensis M28]
 gi|326553701|gb|ADZ88340.1| Response regulator receiver [Brucella melitensis M5-90]
          Length = 225

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D  ++          +G  ++  + L+       SAR D+  ++  L  G+G   
Sbjct: 3   IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPDGQG--- 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119

Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y
Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD  VE N +E H+S+LRK    KLG   +++ R +GY +
Sbjct: 180 S-FDTEVESNTMEVHVSRLRK----KLGHAIIETVRGIGYRL 216


>gi|152974618|ref|YP_001374135.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023370|gb|ABS21140.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 220

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 20/215 (9%)

Query: 10  LVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L+   YI     DG+  ++ FN   F+  L      +++              E+  IIR
Sbjct: 22  LITQQYIVTVASDGLEGMKQFNKHPFDLILLDVMMPNLNG------------FEVANIIR 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRA 126
             S +P+I ++     Q  +  FD G+DD + KP      + RV A+ RR   + ++N  
Sbjct: 70  NQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVLRRSYGERTDNHL 129

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               I V  D     V      L  +E  IL+ L+ N+ K + +  I   ++G ++   E
Sbjct: 130 SFKEIHVDCDTYKVYVNKVEISLTAKEFEILQLLLKNKRKVITRENIVERVWG-YEPYGE 188

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++++HI  +RKKL        + + + +GY ID
Sbjct: 189 TRIIDTHIKNIRKKLNTPY----IKTVKGIGYKID 219


>gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 226

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+   E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ 
Sbjct: 57  GQSGTEVCRQLRQRSTVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116

Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR     ++ ++  + GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q
Sbjct: 117 RRQGEPEELISSTVQAGPVRMDIERHVVSVDGEQVLLPLKEFELLEMLLRNSGRVLTRGQ 176

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +   ++G  D   +   ++ H+    K+LR K+  DP  + RFL
Sbjct: 177 LIDRVWG-SDYVGDTKTLDVHV----KRLRGKIEPDP-SAPRFL 214


>gi|49474504|ref|YP_032546.1| cell cycle transcriptional regulator ctra [Bartonella quintana str.
           Toulouse]
 gi|49240008|emb|CAF26423.1| Cell cycle transcriptional regulator ctra [Bartonella quintana str.
           Toulouse]
          Length = 233

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL   R+  A  + P++ +S   +++  +  F  G DD + KP H  E++AR+ A+ 
Sbjct: 59  GYDVLRTLRL--AKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +   TG + V  D +  EV G    L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSIIVTGDLTVNLDAKTVEVAGRPVHLTSKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|206900228|ref|YP_002251690.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12]
 gi|206739331|gb|ACI18389.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12]
          Length = 220

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 105/195 (53%), Gaps = 12/195 (6%)

Query: 27  EGFNSL-EFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           +G+++L E EE+     + DV  ++  L G  G++V +  R+   +  + +I ++    +
Sbjct: 32  DGYDALIEAEEF-----KPDVVILDIMLPGLSGKEVAK--RLRDKYPDLGIIMLTALGDV 84

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG 144
           +  ++ F+ G DD V KP    E+LAR+ A+ RR +       +  I ++ D     V G
Sbjct: 85  KDKVEAFNLGADDYVVKPFSIEELLARIQAVARRKERKEEVISSEGIELYVDQHRVIVDG 144

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +   L + E  +L  LM N    ++K +I S+I+G +D+   EN+VE +I+ LRKKL +K
Sbjct: 145 KEVDLSKTEFSLLYLLMKNENIVLSKEKILSSIWGDYDDE-RENLVEVYINYLRKKLGDK 203

Query: 205 LGFDPVDSKRFLGYS 219
             +  + + R +GYS
Sbjct: 204 GKY--IKTIRGIGYS 216


>gi|148258428|ref|YP_001243013.1| two-component response regulator [Bradyrhizobium sp. BTAi1]
 gi|146410601|gb|ABQ39107.1| Two-component response regulator [Bradyrhizobium sp. BTAi1]
          Length = 229

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 6/131 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS---DGRDPEVQGEVF 147
            D G DD V KP    E++AR  A+ RRL +  +R     I   S     R   V G   
Sbjct: 97  LDEGADDYVAKPFEPIELVARARAVLRRLYL--DRGAVVSIANLSYDIVNRAVGVDGNPI 154

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            +PRRE  ILE L+   G+ V +  + SA YG F++ ++ N +E+H+S+LR++LR     
Sbjct: 155 VVPRRELAILEALVRRSGRVVLRETLESAAYG-FEDEIQSNAIEAHVSRLRRRLREANCK 213

Query: 208 DPVDSKRFLGY 218
             +   R LGY
Sbjct: 214 ATIRPVRGLGY 224


>gi|229173377|ref|ZP_04300921.1| Two-component response regulator vanRB [Bacillus cereus MM3]
 gi|228610071|gb|EEK67349.1| Two-component response regulator vanRB [Bacillus cereus MM3]
          Length = 214

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ ++IR+ S +P+I ++     +  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 56  FEVAKMIRSQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 115

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++
Sbjct: 116 DKNVNNHLVFKEVRIDVDAYRVYVTDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVW 175

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   E  ++++HI  LRK    KL    + + + +GY ID
Sbjct: 176 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213


>gi|85715363|ref|ZP_01046345.1| two component transcriptional regulatory protein [Nitrobacter sp.
           Nb-311A]
 gi|85697784|gb|EAQ35659.1| two component transcriptional regulatory protein [Nitrobacter sp.
           Nb-311A]
          Length = 223

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  R    +P++ ++        +  FD+G DD V KP H  EILAR+ A+ 
Sbjct: 59  GISVLEAWR--RGGRTMPVLILTARDRWSDKVQGFDAGADDYVTKPFHLEEILARMRALL 116

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++  
Sbjct: 117 RRSTGHAQSELTCGPVTLDTRTGRVSVGGNPIKMTSHEYRLLAYLMHHTGRVVSRTELVE 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   FD   + N +E  + ++RK    KL  D + + R LGY
Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRK----KLDVDIIQTVRGLGY 214


>gi|146291464|ref|YP_001181888.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145563154|gb|ABP74089.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 219

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++   +    +D   +G DD + KP H  E+LAR+  + RR    ++N  +   +
Sbjct: 73  MPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGV 132

Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
            +  D +    V GEV  L + E R+L YLM N  K V+K+++   IY   D+  + NV+
Sbjct: 133 SLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIYE-EDQIKDSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++++LR+    +LG D ++++R  GY +
Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217


>gi|168184947|ref|ZP_02619611.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795402|ref|YP_002862954.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672001|gb|EDT83962.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263740|gb|ACQ54773.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 221

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 19/199 (9%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85
           +L   A + + A+E F  G  + ++    LP+I        IR  S VP+I ++     +
Sbjct: 27  YLVEEATDGLMAVEMFREGNFDLIILDVMLPKIDGFVVCEIIRKESSVPIIMLTALGEEE 86

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142
             +  F+  VDD + KP     ++ RV A+ RR   L+ +N+      I ++       V
Sbjct: 87  DEMRGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNSTLTFEEITIYLSNYKTLV 146

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             +   L  +E +ILE L++N G+  ++  + + I+G +D   +  V+++HI    K LR
Sbjct: 147 NNKEIELTYKEFQILEILISNVGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201

Query: 203 NKLGFDPVDSKRFLGYSID 221
            KL  D + + R +GY I+
Sbjct: 202 QKLSIDYIKTIRGVGYKIE 220


>gi|116872456|ref|YP_849237.1| CheY family two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741334|emb|CAK20456.1| two-component response regulator, CheY family [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 220

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           L  +IR+ S  P++ ++        L  FD G DD + KP  +  +L RV  + RR    
Sbjct: 63  LTELIRSTSSAPILMMTALSEESDELKGFDLGADDYIQKPFSYLVLLKRVQVLLRRSNQK 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V   +   G I V ++  +    GE   L ++E  IL  L+ N+ K + +  I S ++ 
Sbjct: 123 EVDKKKLRCGNISVNTETFEVVSAGETIELTKKEFDILVLLIRNQKKVITREMILSQVWD 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F   V+ +++ +H+  LRKKL      + + + R  GY +D
Sbjct: 183 -FAAIVDTSIINTHMKNLRKKLHT----EKIRTIRGAGYKMD 219


>gi|331268770|ref|YP_004395262.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125320|gb|AEB75265.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 229

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 72/148 (48%), Gaps = 9/148 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR   ++P+I IS     +  L+ F  G DD V KP    E+ AR+ A  RR   
Sbjct: 64  ELIKKIRKTKKLPIIVISAKLDKEIKLELFKLGADDYVTKPFDIDELSARIDANLRRYID 123

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            NN +      V  D       ++  V G+   L  RE  ILE L+ +  K  +K  +F 
Sbjct: 124 FNNSSNGEKDIVHKDIILNKEAKEVLVSGQELSLTSREFNILELLLTHPKKVFSKANLFE 183

Query: 176 AIYGLFDEAV-EENVVESHISKLRKKLR 202
           +++G  DE + +EN V  HIS LR KL 
Sbjct: 184 SVWG--DEYLGDENTVNVHISNLRNKLN 209


>gi|153941052|ref|YP_001391293.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936948|gb|ABS42446.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319325|gb|ADF99702.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 221

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 19/199 (9%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85
           +L   A + + A+E F  G  + ++    LP+I        IR  S VP+I ++     +
Sbjct: 27  YLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFVVCEIIRKESSVPIIMLTALGEEE 86

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142
             +  F+  VDD + KP     ++ RV A+ RR   L+ +N+      I ++       V
Sbjct: 87  DEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNSTLTFEEITIYPSNYKTLV 146

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             +   L  +E +ILE L++N G+  ++  + + I+G +D   +  V+++HI    K LR
Sbjct: 147 NNKEIELTYKEFQILEILISNAGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201

Query: 203 NKLGFDPVDSKRFLGYSID 221
            KL  D + + R +GY I+
Sbjct: 202 QKLNIDYIKTIRGVGYKIE 220


>gi|217971454|ref|YP_002356205.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|217496589|gb|ACK44782.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
          Length = 219

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++   +    +D   +G DD + KP H  E+LAR+  + RR    ++N  +   +
Sbjct: 73  MPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGV 132

Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
            +  D +    V GEV  L + E R+L YLM N  K V+K+++   IY   D+  + NV+
Sbjct: 133 SLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIYE-EDQIKDSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++++LR+    +LG D ++++R  GY +
Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217


>gi|126725701|ref|ZP_01741543.1| DNA-binding response regulator [Rhodobacterales bacterium HTCC2150]
 gi|126704905|gb|EBA03996.1| DNA-binding response regulator [Rhodobacterales bacterium HTCC2150]
          Length = 222

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
           F+L++D A +       F  DG +++  +SL        +   D+  ++  L  G G   
Sbjct: 3   FLLVEDNAQLARAVCDRFAIDGHAIDHASSLADAIAFVDTTHYDLILLDIMLPDGDGRDF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L   R  RA ++ P+I ++    +   +   D G DD V KP    E+ AR  A+ RR  
Sbjct: 63  LSRHR--RAKNKTPVIVLTARSQVSDRISLLDLGADDYVTKPFDFAELEARCRAVLRRQG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+ NR E   + + S       +     L  RE R++E   A  G+  +K  +   ++ 
Sbjct: 121 GVAQNRIEFAGVVLDSLEATLSAKNGTQNLRNREFRLVEIFFAAPGQIFSKNHLMDRLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D+ V EN +E ++ +LRKKL        +++ R LGY +
Sbjct: 181 LSDD-VSENAIEVYVGRLRKKLDGTGA--QIETVRSLGYRL 218


>gi|229095219|ref|ZP_04226211.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229101326|ref|ZP_04232070.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229114167|ref|ZP_04243588.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669187|gb|EEL24608.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228682031|gb|EEL36164.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228688078|gb|EEL41964.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 76  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V+G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 136 GIELFGKDKDVQVEGQDIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223


>gi|227536221|ref|ZP_03966270.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300772180|ref|ZP_07082050.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|227243924|gb|EEI93939.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300760483|gb|EFK57309.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 225

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 11/206 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + D  +    ++G +++   S E    +      DV  ++  L   G   ++
Sbjct: 4   LLVEDDARISDFIVKGLEENGFNVQLCVSAEEAREVVFEHSFDVIIMDVML--PGIDGIQ 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L ++IR    + P++ +S     +  +   DSG DD + KP H +E+++R+ A+ RR K 
Sbjct: 62  LTKMIRYKKNLTPILMLSALNEAEDKIAALDSGADDFLVKPFHFKELISRINALTRRTKY 121

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V +N      +++  D       GE   L  +E ++L YL  N  K V++T + +A
Sbjct: 122 QKQEVLSNSLVIQNLKIDRDKYAVYQDGEKIELSPKEFKLLLYLAENTDKVVSRTMVLNA 181

Query: 177 IYGL-FDEAVEENVVESHISKLRKKL 201
           ++G+ FD     NVV+ +IS LR K+
Sbjct: 182 VWGINFDN--NTNVVDVYISYLRNKI 205


>gi|167758316|ref|ZP_02430443.1| hypothetical protein CLOSCI_00655 [Clostridium scindens ATCC 35704]
 gi|167664213|gb|EDS08343.1| hypothetical protein CLOSCI_00655 [Clostridium scindens ATCC 35704]
          Length = 225

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 3/163 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+    L R IR     P++ ++        ++    G DD + KP    E+ ARVAA  
Sbjct: 62  GQDGFSLCRDIRDQVDCPILFLTAKVQEADIMEGLGIGGDDYITKPFGIGELRARVAAHL 121

Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR  +   N    G ++     +    +G+   L + E  I EYL  N G+  +K +I+ 
Sbjct: 122 RREGREKKNAVSVGDVQFLLQAKQAVYEGKALELTKSEYAICEYLALNHGQVFSKDRIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++G +D   + + +  HI  +R K + K GF P+++   +GY
Sbjct: 182 HVFG-YDGEGDSSAITEHIKNIRGKCQ-KAGFAPIETVWGIGY 222


>gi|126172493|ref|YP_001048642.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|160873368|ref|YP_001552684.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|304411806|ref|ZP_07393418.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307306140|ref|ZP_07585885.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125995698|gb|ABN59773.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|160858890|gb|ABX47424.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|304349994|gb|EFM14400.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911013|gb|EFN41440.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315265596|gb|ADT92449.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 219

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++   +    +D   +G DD + KP H  E+LAR+  + RR    ++N  +   +
Sbjct: 73  MPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGV 132

Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
            +  D +    V GEV  L + E R+L YLM N  K V+K+++   IY   D+  + NV+
Sbjct: 133 SLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIYE-EDQIKDSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++++LR+    +LG D ++++R  GY +
Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217


>gi|124265269|ref|YP_001019273.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124258044|gb|ABM93038.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 223

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA   V P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 60  LEVLRKMRARGTVTPVLILTAADSVEQRVKGLDLGADDYMAKPFALQELEARVRALTRRG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L  ++   + GP+   + GR   +  ++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 120 LGTASAIIKHGPLSFDATGRVAYLNDQMIELSARELSLLEVLLQRAGRLVSKDQLVERLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              DE V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 180 EWGDE-VSNNAIEVYIHRLRKKIEQ--GPVRIATVRGLGYCLE 219


>gi|229065319|ref|ZP_04200598.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|228715969|gb|EEL67706.1| Two-component response regulator vanRB [Bacillus cereus AH603]
          Length = 221

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 7/162 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ ++IR+ S VP+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 64  EVAKMIRSQSNVPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSND 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  +N      +RV  D     V      L  +E  IL+ L+ N  K + +  I   ++G
Sbjct: 124 KSLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNERKVLLRESIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E  ++++HI  +RK    KL    + + + +GY ID
Sbjct: 184 -YDYIGESRIIDTHIKNIRK----KLDIPYIKTIKGIGYKID 220


>gi|163816600|ref|ZP_02207964.1| hypothetical protein COPEUT_02791 [Coprococcus eutactus ATCC 27759]
 gi|158448300|gb|EDP25295.1| hypothetical protein COPEUT_02791 [Coprococcus eutactus ATCC 27759]
          Length = 232

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 5/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S VP+I ++   S    +     G DD + KP +   +L R+AA+ +R++ S
Sbjct: 75  LVKEIRKESDVPIIMVTSRTSEMDEVLSMSYGADDYITKPYNPTILLLRIAAVLKRMEGS 134

Query: 123 NNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N A      V FS G   +   E+  L + E  I + L+ANR K V++ +I + ++   
Sbjct: 135 QNTASYRDAEVNFSKGTISKGDQEMV-LTKNEMIIFQLLLANREKIVSRDEIMTDLWD-N 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           DE V +N +  +IS+LR KL + LG+ D +++++  GY +
Sbjct: 193 DEFVNDNALTVNISRLRGKLAD-LGYDDAIETRKKQGYRL 231


>gi|71906819|ref|YP_284406.1| two component transcriptional regulator [Dechloromonas aromatica
           RCB]
 gi|71846440|gb|AAZ45936.1| two component transcriptional regulator, winged helix family
           [Dechloromonas aromatica RCB]
          Length = 221

 Score = 68.2 bits (165), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +         G +++   + E  E        D++ I+  L   G   L
Sbjct: 3   ILLVEDDTMLAESICEGLEKGGFTVDRLGAAEPAESALGLTHYDLAIIDIGL--PGMSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL R +R    QVP++ ++    L   +   D G DD + KP    E+LAR+ A+ RR L
Sbjct: 61  ELIRRVRLRGLQVPVLILTARDGLDDRISGLDLGADDYMVKPFQLPELLARMRALIRRSL 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G IR+    R     GE+  L  RE  IL+ LM      V K ++  ++  
Sbjct: 121 SAASSELAAGGIRLDLARRVATAHGEIMDLTGREWEILQQLMLASPNVVGKQKMAESLSE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  +  N VE +IS+LR+KL+   G + + + R +GY +D
Sbjct: 181 -WENEISANAVEIYISRLRQKLQG-CGIE-IRTIRGIGYRLD 219


>gi|260430574|ref|ZP_05784547.1| transcriptional activator protein CopR [Citreicella sp. SE45]
 gi|260418603|gb|EEX11860.1| transcriptional activator protein CopR [Citreicella sp. SE45]
          Length = 225

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 22/230 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIG-K 56
            +L +D A + D  +A   ++G S+E    G ++L +  +       D++ ++  L G  
Sbjct: 3   ILLAEDDAKIADYIVAGLSENGHSVEHVSDGRDALSYCLYNDC----DLAILDRMLPGMD 58

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL+  R   +   +P++ ++    +   ++   +G DD + KP H  E++AR+ AI 
Sbjct: 59  GLSVLKALRA--SQKTLPVLFLTALGQVDDRVEGLAAGGDDYLTKPFHFSELVARIDAIV 116

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR     +  +  P+    D       R    QG V  L  +E  ILE LM N G+ V +
Sbjct: 117 RR----KSEKKVEPVLTVHDLTLDLLSRTATRQGNVIELHAKEFSILEILMRNAGRVVTR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           T +   ++  F+      VVE+H+S+LR K+        + + R  GYS+
Sbjct: 173 TLLLERVWN-FNFEPNTTVVETHMSRLRAKVDRPFDTPLIHTIRNTGYSM 221


>gi|91790516|ref|YP_551468.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91699741|gb|ABE46570.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 223

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +RA  S +P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  LEVLKRLRARGSALPVLILTAADSVEERVKGLDYGADDYMAKPFSLQELEARVRALIRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGGASSTIKHGPLVYDQAGRVATIDGQMLELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 E-WGEEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220


>gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550]
 gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 228

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 76  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 136 GIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223


>gi|227524667|ref|ZP_03954716.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088151|gb|EEI23463.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 228

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 13/203 (6%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+++   L     LQ++  E+   I   L+      +E+ R +R     P+I ++   S
Sbjct: 24  EGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGMEVARRLREKKNTPIIMMTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-------IRVFSD 136
           +   +  FD G DD + KP    E+LAR+ A+ RR+++ N++ ++         + +  +
Sbjct: 84  VIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQIENDQQKSSKKSVTFKDLTIEKE 143

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R      EV  L +RE  +L  LM N    +A+  + + ++G +D  VE NVV+ +I  
Sbjct: 144 SRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLLTKVWG-YDSEVETNVVDVYIRY 202

Query: 197 LRKKLRNKLGFDP-VDSKRFLGY 218
           LR K+ N+ G +  + + R  GY
Sbjct: 203 LRNKI-NRPGENSYIQTVRGTGY 224


>gi|260776888|ref|ZP_05885782.1| two component response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606554|gb|EEX32828.1| two component response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 223

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 65  RIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R++R  SQV  P++ ++   S+   +   ++G DD + KP    E+ ARV A+ RR  VS
Sbjct: 64  RVLR-QSQVHSPILILTAKDSIGDRVAGLEAGADDYMVKPFAFEELNARVKALARRQPVS 122

Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +   GP+ +    R     G    L  RE +ILE LM N+G+ V +T +   ++G 
Sbjct: 123 QASTQLTAGPLTLDKLSRKVTHSGTEVDLLPREYQILELLMVNQGELVTRTMLLEQVWGF 182

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            FD     ++V++H+S+LR K+      + + + R  GY + +
Sbjct: 183 QFDP--NTSLVQTHVSRLRNKVDKAFNTELIKTVRGAGYVLSF 223


>gi|239832477|ref|ZP_04680806.1| response regulator CTRA [Ochrobactrum intermedium LMG 3301]
 gi|239824744|gb|EEQ96312.1| response regulator CTRA [Ochrobactrum intermedium LMG 3301]
          Length = 232

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 3/142 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             DE  E  +++  I KLRKKL
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKL 201


>gi|229817830|ref|ZP_04448112.1| hypothetical protein BIFANG_03114 [Bifidobacterium angulatum DSM
           20098]
 gi|229784811|gb|EEP20925.1| hypothetical protein BIFANG_03114 [Bifidobacterium angulatum DSM
           20098]
          Length = 220

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 15/212 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L +DG+  +   D  ++ G +   F+  L              ++  G    EL R I
Sbjct: 19  RVLGRDGHEVVRAADPTAVPGMDLSRFDLVLCD------------VMMPGLDGFELVRQI 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R     P++ ++   + +  +  +  G DD V KP    E+ A+VAA  RR +  ++ A 
Sbjct: 67  RPDFDGPIVFLTARVAEEDAVAGYGLGADDYVRKPFGAAELRAKVAAHLRRERRPHSHAL 126

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + G +R+    R   V GE  PL   E  I EYL  + G+ +++ QI  A+ G ++  V+
Sbjct: 127 SFGEVRIDLGARGLAVGGEAVPLTPTEYAICEYLARHPGQVMSRAQIREAVLG-WESDVD 185

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  +   +S+ R+KL ++ G DP+ +   +GY
Sbjct: 186 DAAISMQVSRARRKL-SEAGADPIATVWGMGY 216


>gi|17986706|ref|NP_539340.1| response regulator CTRA [Brucella melitensis bv. 1 str. 16M]
 gi|23502462|ref|NP_698589.1| cell cycle transcriptional regulator CtrA [Brucella suis 1330]
 gi|62290479|ref|YP_222272.1| cell cycle transcriptional regulator CtrA [Brucella abortus bv. 1
           str. 9-941]
 gi|82700402|ref|YP_414976.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|148559147|ref|YP_001259466.1| cell cycle transcriptional regulator CtrA [Brucella ovis ATCC
           25840]
 gi|161619539|ref|YP_001593426.1| hypothetical protein BCAN_A1634 [Brucella canis ATCC 23365]
 gi|163843848|ref|YP_001628252.1| hypothetical protein BSUIS_A1654 [Brucella suis ATCC 23445]
 gi|189024706|ref|YP_001935474.1| transcriptional regulator [Brucella abortus S19]
 gi|225628033|ref|ZP_03786069.1| response regulator CTRA [Brucella ceti str. Cudo]
 gi|225853072|ref|YP_002733305.1| hypothetical protein BMEA_A1651 [Brucella melitensis ATCC 23457]
 gi|237815987|ref|ZP_04594984.1| response regulator CTRA [Brucella abortus str. 2308 A]
 gi|254689779|ref|ZP_05153033.1| hypothetical protein Babob68_06309 [Brucella abortus bv. 6 str.
           870]
 gi|254694268|ref|ZP_05156096.1| hypothetical protein Babob3T_06319 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697923|ref|ZP_05159751.1| hypothetical protein Babob28_09480 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702316|ref|ZP_05164144.1| hypothetical protein Bsuib55_15851 [Brucella suis bv. 5 str. 513]
 gi|254704844|ref|ZP_05166672.1| hypothetical protein Bsuib36_13179 [Brucella suis bv. 3 str. 686]
 gi|254708258|ref|ZP_05170086.1| hypothetical protein BpinM_15199 [Brucella pinnipedialis
           M163/99/10]
 gi|254710630|ref|ZP_05172441.1| hypothetical protein BpinB_10241 [Brucella pinnipedialis B2/94]
 gi|254714814|ref|ZP_05176625.1| hypothetical protein BcetM6_16039 [Brucella ceti M644/93/1]
 gi|254717874|ref|ZP_05179685.1| hypothetical protein BcetM_16006 [Brucella ceti M13/05/1]
 gi|254719624|ref|ZP_05181435.1| hypothetical protein Bru83_08785 [Brucella sp. 83/13]
 gi|254730813|ref|ZP_05189391.1| hypothetical protein Babob42_06339 [Brucella abortus bv. 4 str.
           292]
 gi|256032123|ref|ZP_05445737.1| hypothetical protein BpinM2_16008 [Brucella pinnipedialis
           M292/94/1]
 gi|256045215|ref|ZP_05448113.1| hypothetical protein Bmelb1R_12041 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061645|ref|ZP_05451784.1| hypothetical protein Bneo5_14960 [Brucella neotomae 5K33]
 gi|256114167|ref|ZP_05454921.1| hypothetical protein Bmelb3E_15257 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160319|ref|ZP_05458013.1| hypothetical protein BcetM4_15036 [Brucella ceti M490/95/1]
 gi|256255524|ref|ZP_05461060.1| hypothetical protein BcetB_14813 [Brucella ceti B1/94]
 gi|256258031|ref|ZP_05463567.1| hypothetical protein Babob9C_11923 [Brucella abortus bv. 9 str.
           C68]
 gi|256263445|ref|ZP_05465977.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|256370012|ref|YP_003107523.1| cell cycle transcriptional regulator CtrA [Brucella microti CCM
           4915]
 gi|260169258|ref|ZP_05756069.1| cell cycle transcriptional regulator CtrA [Brucella sp. F5/99]
 gi|260547010|ref|ZP_05822749.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260565187|ref|ZP_05835671.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260565914|ref|ZP_05836384.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260755311|ref|ZP_05867659.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260758532|ref|ZP_05870880.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260762356|ref|ZP_05874699.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884328|ref|ZP_05895942.1| response regulator CtrA [Brucella abortus bv. 9 str. C68]
 gi|261214576|ref|ZP_05928857.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|261219720|ref|ZP_05934001.1| response regulator CtrA [Brucella ceti M13/05/1]
 gi|261222734|ref|ZP_05937015.1| response regulator CtrA [Brucella ceti B1/94]
 gi|261315759|ref|ZP_05954956.1| response regulator CtrA [Brucella pinnipedialis M163/99/10]
 gi|261318202|ref|ZP_05957399.1| response regulator CtrA [Brucella pinnipedialis B2/94]
 gi|261322609|ref|ZP_05961806.1| response regulator CtrA [Brucella ceti M644/93/1]
 gi|261325655|ref|ZP_05964852.1| response regulator CtrA [Brucella neotomae 5K33]
 gi|261752882|ref|ZP_05996591.1| response regulator CtrA [Brucella suis bv. 5 str. 513]
 gi|261755541|ref|ZP_05999250.1| response regulator CtrA [Brucella suis bv. 3 str. 686]
 gi|261758771|ref|ZP_06002480.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265984635|ref|ZP_06097370.1| response regulator CtrA [Brucella sp. 83/13]
 gi|265989235|ref|ZP_06101792.1| response regulator CtrA [Brucella pinnipedialis M292/94/1]
 gi|265991648|ref|ZP_06104205.1| response regulator CtrA [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995486|ref|ZP_06108043.1| response regulator CtrA [Brucella melitensis bv. 3 str. Ether]
 gi|265998696|ref|ZP_06111253.1| response regulator CtrA [Brucella ceti M490/95/1]
 gi|294852911|ref|ZP_06793584.1| cell cycle response regulator ctrA [Brucella sp. NVSL 07-0026]
 gi|297248862|ref|ZP_06932580.1| cell cycle response regulator ctrA [Brucella abortus bv. 5 str.
           B3196]
 gi|306837741|ref|ZP_07470609.1| response regulator CTRA [Brucella sp. NF 2653]
 gi|306843047|ref|ZP_07475672.1| response regulator CTRA [Brucella sp. BO2]
 gi|306844599|ref|ZP_07477186.1| response regulator CTRA [Brucella sp. BO1]
 gi|81325649|sp|Q9ZHS1|CTRA_BRUAB RecName: Full=Cell cycle response regulator CtrA
 gi|81752222|sp|Q8FZ93|CTRA_BRUSU RecName: Full=Cell cycle response regulator CtrA
 gi|81832695|sp|Q7CNV1|CTRA_BRUME RecName: Full=Cell cycle response regulator CtrA
 gi|123547126|sp|Q2YQA4|CTRA_BRUA2 RecName: Full=Cell cycle response regulator CtrA
 gi|223635099|sp|B2S753|CTRA_BRUA1 RecName: Full=Cell cycle response regulator CtrA
 gi|223635100|sp|A9M708|CTRA_BRUC2 RecName: Full=Cell cycle response regulator CtrA
 gi|223635101|sp|A5VRW9|CTRA_BRUO2 RecName: Full=Cell cycle response regulator CtrA
 gi|223635102|sp|B0CI76|CTRA_BRUSI RecName: Full=Cell cycle response regulator CtrA
 gi|19223933|gb|AAL86376.1|AF411570_1 response regulator CtrA [Brucella abortus]
 gi|2952543|gb|AAC69920.1| response regulator CtrA [Brucella abortus]
 gi|17982329|gb|AAL51604.1| response regulator ctra [Brucella melitensis bv. 1 str. 16M]
 gi|23348453|gb|AAN30504.1| cell cycle transcriptional regulator CtrA [Brucella suis 1330]
 gi|62196611|gb|AAX74911.1| CtrA, cell cycle transcriptional regulator CtrA [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616503|emb|CAJ11570.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|148370404|gb|ABQ60383.1| cell cycle transcriptional regulator CtrA [Brucella ovis ATCC
           25840]
 gi|161336350|gb|ABX62655.1| Hypothetical protein BCAN_A1634 [Brucella canis ATCC 23365]
 gi|163674571|gb|ABY38682.1| Hypothetical protein BSUIS_A1654 [Brucella suis ATCC 23445]
 gi|189020278|gb|ACD73000.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|225617196|gb|EEH14242.1| response regulator CTRA [Brucella ceti str. Cudo]
 gi|225641437|gb|ACO01351.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|237789285|gb|EEP63496.1| response regulator CTRA [Brucella abortus str. 2308 A]
 gi|256000175|gb|ACU48574.1| cell cycle transcriptional regulator CtrA [Brucella microti CCM
           4915]
 gi|260096060|gb|EEW79937.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260151255|gb|EEW86349.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260155432|gb|EEW90512.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260668850|gb|EEX55790.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260672788|gb|EEX59609.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675419|gb|EEX62240.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260873856|gb|EEX80925.1| response regulator CtrA [Brucella abortus bv. 9 str. C68]
 gi|260916183|gb|EEX83044.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260921318|gb|EEX87971.1| response regulator CtrA [Brucella ceti B1/94]
 gi|260924809|gb|EEX91377.1| response regulator CtrA [Brucella ceti M13/05/1]
 gi|261295299|gb|EEX98795.1| response regulator CtrA [Brucella ceti M644/93/1]
 gi|261297425|gb|EEY00922.1| response regulator CtrA [Brucella pinnipedialis B2/94]
 gi|261301635|gb|EEY05132.1| response regulator CtrA [Brucella neotomae 5K33]
 gi|261304785|gb|EEY08282.1| response regulator CtrA [Brucella pinnipedialis M163/99/10]
 gi|261738755|gb|EEY26751.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261742635|gb|EEY30561.1| response regulator CtrA [Brucella suis bv. 5 str. 513]
 gi|261745294|gb|EEY33220.1| response regulator CtrA [Brucella suis bv. 3 str. 686]
 gi|262553320|gb|EEZ09154.1| response regulator CtrA [Brucella ceti M490/95/1]
 gi|262766599|gb|EEZ12388.1| response regulator CtrA [Brucella melitensis bv. 3 str. Ether]
 gi|263002432|gb|EEZ15007.1| response regulator CtrA [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093453|gb|EEZ17503.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661432|gb|EEZ31693.1| response regulator CtrA [Brucella pinnipedialis M292/94/1]
 gi|264663227|gb|EEZ33488.1| response regulator CtrA [Brucella sp. 83/13]
 gi|294821500|gb|EFG38499.1| cell cycle response regulator ctrA [Brucella sp. NVSL 07-0026]
 gi|297176031|gb|EFH35378.1| cell cycle response regulator ctrA [Brucella abortus bv. 5 str.
           B3196]
 gi|306275043|gb|EFM56806.1| response regulator CTRA [Brucella sp. BO1]
 gi|306286777|gb|EFM58323.1| response regulator CTRA [Brucella sp. BO2]
 gi|306407197|gb|EFM63408.1| response regulator CTRA [Brucella sp. NF 2653]
 gi|326409615|gb|ADZ66680.1| Transcriptional regulatory protein [Brucella melitensis M28]
 gi|326539318|gb|ADZ87533.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 232

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 3/142 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             DE  E  +++  I KLRKKL
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKL 201


>gi|319790209|ref|YP_004151842.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
 gi|317114711|gb|ADU97201.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
          Length = 212

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 11/147 (7%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P++ ++     +  +   DSG DD + KP   +E+LAR+ A+ RR +    R   G  R 
Sbjct: 76  PILMLTALSEEEEKVKGLDSGADDYLTKPFGIKELLARIRALLRRSERGFTRE--GEFRF 133

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             +G    V+G    L R+E+ IL+ L+ NRGK V+K +I + ++    E V + VV+ H
Sbjct: 134 TDEG--VVVEGREVKLTRKEKEILKVLVENRGKAVSKEEIVAKVWK--GEQVNKRVVDVH 189

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    K LR+KLG D + +   +GY +
Sbjct: 190 V----KHLRDKLG-DRIKTVWGVGYKV 211


>gi|297588589|ref|ZP_06947232.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573962|gb|EFH92683.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 229

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 21/233 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KG 57
           + V+ D++ +VK   I L  D+   L+ +N  +  E ++ +       I+ FL+    +G
Sbjct: 4   IMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGYDALELMEKNK------IDLFLVDIMMEG 57

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              LEL + IR  S  P+I +S    L   +   + G DD + KP    E+LAR+ +  R
Sbjct: 58  MDGLELTQKIREVSNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLR 117

Query: 118 RLKVSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RL++S + +  G   VFS GR        +  + GE   L   E  I+  L+ N+G    
Sbjct: 118 RLELSKDNSLNG--NVFSAGRLTINDDKKEVLIDGEEIKLTPYEYGIILLLLKNKGIVFT 175

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             +I+  ++      V++ +V  HIS+LR+K+  N    D + S   +GY I+
Sbjct: 176 SEEIYENVWEAPPYDVKK-IVSVHISRLREKVEINPRRPDLIKSVYGMGYKIE 227


>gi|254519596|ref|ZP_05131652.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913345|gb|EEH98546.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 7/160 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I ++   S    L   + G DD + KP + + +LAR+++I RR   +
Sbjct: 65  ICREIRKRSSIPIIVVTSRDSEVDELMSMNLGADDFITKPYNTQILLARISSIIRR-AYN 123

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N+ +E     G I   S   + E   +   L + E RIL  L+ N+ K V++ +I  +++
Sbjct: 124 NSDSEVLEYRGLIHNLSTS-EAEFDNKRIELSKNESRILYVLIKNKEKIVSRNEIIESLW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              DE V++N +  +I++LRKKL      D + +KR  GY
Sbjct: 183 Q-SDEFVDDNTLTVNINRLRKKLEEIGAIDYLKTKRGQGY 221


>gi|29830515|ref|NP_825149.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|290959412|ref|YP_003490594.1| phosphate two component system response regulator [Streptomyces
           scabiei 87.22]
 gi|29607627|dbj|BAC71684.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
 gi|260648938|emb|CBG72052.1| phosphate two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 223

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 59  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 206


>gi|85704878|ref|ZP_01035979.1| two-component response regulator [Roseovarius sp. 217]
 gi|85670696|gb|EAQ25556.1| two-component response regulator [Roseovarius sp. 217]
          Length = 223

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 6/165 (3%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + +R A +  P++ ++   S+   +   ++G DD + KP    E+ ARVAA+ RR 
Sbjct: 60  LTLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRP 119

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +       GP+ +    R    +     L  RE  ILE+LM  +G+   +T +  AI
Sbjct: 120 HALDQETMLRAGPLEMDLIARKVTRERHEIDLLPREFAILEHLMRRKGRVQTRTMLLEAI 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + FD     NVVE+HIS+LR K+      D + + R  GY ID
Sbjct: 180 WDISFDPMT--NVVETHISRLRAKVDRPFATDLIKTVRGAGYRID 222


>gi|47567150|ref|ZP_00237866.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
 gi|47556206|gb|EAL14541.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
          Length = 223

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|238749640|ref|ZP_04611145.1| Two-component response regulator of virulence determinant [Yersinia
           rohdei ATCC 43380]
 gi|238712295|gb|EEQ04508.1| Two-component response regulator of virulence determinant [Yersinia
           rohdei ATCC 43380]
          Length = 223

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   +  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIDFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL+ +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQAEHEGEVITTIRGQGYRFDTN 223


>gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 226

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|319898471|ref|YP_004158564.1| cell cycle transcriptional regulator CtrA [Bartonella clarridgeiae
           73]
 gi|319402435|emb|CBI75976.1| cell cycle transcriptional regulator CtrA [Bartonella clarridgeiae
           73]
          Length = 233

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 21/191 (10%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           YI   G++G+ L      +++  L      D+S  +        + L L +I     + P
Sbjct: 28  YITDLGEEGIDLGKL--YDYDIILLDLNLPDISGYDVL------RTLRLEKI-----KTP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130
           ++ +S    ++  +  F  G DD + KP H  E++AR+ A+ RR   S   A+    TG 
Sbjct: 75  VLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRR---SKGHAQSVIITGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  EV G    L  +E ++LE L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 LTVNLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKL 201
           +  I KLRKKL
Sbjct: 191 DVFICKLRKKL 201


>gi|240850928|ref|YP_002972328.1| cell cycle transcriptional regulator CtrA [Bartonella grahamii
           as4aup]
 gi|240268051|gb|ACS51639.1| cell cycle transcriptional regulator CtrA [Bartonella grahamii
           as4aup]
          Length = 233

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL   R+  A  + P++ +S   +++  +  F  G DD + KP H  E++AR+ A+ 
Sbjct: 59  GYDVLRTLRL--AKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +   TG + V  D +  EV G    L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVIVTGDLTVNLDAKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|229588980|ref|YP_002871099.1| two component system, response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229360846|emb|CAY47704.1| two component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 223

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+      +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  + 
Sbjct: 63  LARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLG 122

Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             R +   + V+  D R   V GE+  L  RE+ +LE L+A  G+ ++K Q+ S ++GL 
Sbjct: 123 GERQQACGVLVYDLDTRRFTVGGELMTLTSREQAVLEALIARPGRVMSKEQLASQVFGL- 181

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE    + +E ++ +LRKKL
Sbjct: 182 DEEASPDAIEIYVHRLRKKL 201


>gi|237794328|ref|YP_002861880.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229261381|gb|ACQ52414.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 228

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 18/197 (9%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY       G+  +E F S++ +  +      D+S         GE   E+ RIIR
Sbjct: 21  LEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDIS---------GE---EVCRIIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL   N+ +  
Sbjct: 69  QSSDVHIFMLTAKGTLNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTYNSTSNL 128

Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I+G+  E 
Sbjct: 129 IFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIFGIDFEG 188

Query: 185 VEENVVESHISKLRKKL 201
            +   ++ HI  +RKK+
Sbjct: 189 YDR-TIDVHIKNIRKKI 204


>gi|225388781|ref|ZP_03758505.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
           DSM 15981]
 gi|225045163|gb|EEG55409.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
           DSM 15981]
          Length = 225

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 2/144 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR +SQVP+I ++     +  L  F  GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  EVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSNM 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS +    G I +        + G    L  +E  +L Y + N+G  +++ +I + ++  
Sbjct: 125 VSTDTLNVGGICIDKAAHQVTIDGSEIELSYKEFELLTYFVENQGLALSREKILNNVWN- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D   +   +++H+ KLR K+  K
Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEK 207


>gi|242280512|ref|YP_002992641.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
 gi|242123406|gb|ACS81102.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio salexigens DSM 2638]
          Length = 232

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 7/148 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+  LE+ R +R HS VP+I ++        +   + G DD ++KP + RE+LAR+ A+ 
Sbjct: 60  GKDGLEVLRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVL 119

Query: 117 RRLK-VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR K   NN   +G I V         +  E++G+   L   E ++L+ LM N G+ + +
Sbjct: 120 RRAKGPENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLR 198
             + ++++G    A + + ++ HISKLR
Sbjct: 180 DDLMTSVWGKDFNAFDRS-IDVHISKLR 206


>gi|163816027|ref|ZP_02207397.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759]
 gi|158448837|gb|EDP25832.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759]
          Length = 222

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + IRA++Q VP++ ++     Q  +   D+G  D + KP    E LAR+  + R  
Sbjct: 60  MEVLKTIRANNQQVPVLFLTAKGETQDIVRGLDAGASDYMTKPFEFPEFLARLRVMLRTQ 119

Query: 120 KVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V N N    G + V  +       G    L  RE  ILEYL  NR   V + QI + I+
Sbjct: 120 GVVNENVIACGSLVVDMNNHKAVRDGRNIDLTVREYAILEYLARNRNIVVTREQIRANIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + D+ V  NVV+ +I  LR+K+ +K     + + R +GY ++ 
Sbjct: 180 NI-DDDVNSNVVDVYIRYLRRKIDDKYDDKLIQTIRGVGYKLEC 222


>gi|212636326|ref|YP_002312851.1| DNA-binding response regulator [Shewanella piezotolerans WP3]
 gi|212557810|gb|ACJ30264.1| DNA-binding response regulator [Shewanella piezotolerans WP3]
          Length = 233

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 12/155 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----E 127
           + P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR   S  +A     
Sbjct: 72  EFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAGKASPVIN 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GP  + +   +    GE+  L   E ++LEY M + G+  +KT +   IY   D  ++ 
Sbjct: 129 NGPFSLNTSSLELTKNGELISLSGSEYKLLEYFMLHIGEVKSKTVLTEHIYDQ-DFDLDS 187

Query: 188 NVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
           NV+E  I +LRKKL   N+LG   +++ R  GY +
Sbjct: 188 NVIEVFIRRLRKKLDADNQLGL--IETLRGQGYRL 220


>gi|90419036|ref|ZP_01226947.1| two component repsonse/transcriptional regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337116|gb|EAS50821.1| two component repsonse/transcriptional regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 231

 Score = 68.2 bits (165), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 3/142 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E  +LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVINTGDLTVNLDAKTVEVNGQRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             DE  E  +++  I KLRKKL
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKL 201


>gi|229018018|ref|ZP_04174894.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
 gi|229026943|ref|ZP_04183264.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228734357|gb|EEL85030.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228743287|gb|EEL93411.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
          Length = 214

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 56  FEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 115

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++
Sbjct: 116 DKNVNNYLVFKEVRIDVDAYRVYVNDIEILLTTKEFEILQLLFQNERKVLTRENIVEKVW 175

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   E  ++++HI  LRK    KL    + + + +GY ID
Sbjct: 176 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213


>gi|307728697|ref|YP_003905921.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307583232|gb|ADN56630.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 224

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 22/190 (11%)

Query: 39  QSSAREDVSAIEAFLIG--KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           ++  R DV A     +G  + + +  L  I RA   +P++ ++   ++   +   D G D
Sbjct: 37  EAELRSDVYAAAVLDLGLPRKDGIEVLSSIRRAGITLPVLVLTARDTVPDRVRGLDIGAD 96

Query: 97  DVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
           D V KP+  +E+ AR+ A+ RR        L+V N   E     V+ +        E   
Sbjct: 97  DYVVKPVDLQELAARLRALVRRAHGVSQETLRVQNVALEPATRSVYRN-------EEPVT 149

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L  RE  +L+ LM N G+ +++ Q+  AIYG + + +E N VE HI     +LR KLG D
Sbjct: 150 LSSREFDLLQTLMLNAGRVLSREQLEQAIYG-WGQEIESNAVEVHI----HRLRTKLGSD 204

Query: 209 PVDSKRFLGY 218
            + + R +GY
Sbjct: 205 LIKTVRGVGY 214


>gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264]
 gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264]
          Length = 224

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 10/147 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  SQVP+I ++    +   +  FD G DD + KP  + E+LAR+ A+ RR K
Sbjct: 62  MEVCKRIREGSQVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKALLRRTK 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIF 174
            +    +   I  F D +      EVF       L +RE  +L++L+ N+G  +++ +I 
Sbjct: 122 KT---VDHKGIFEFEDLKINYSTYEVFRGETLISLSKREFELLDFLVLNKGIVLSRDKIL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G FD    +N+++ +I  LR K+
Sbjct: 179 EEVWG-FDYIGNDNILDLYIKYLRDKV 204


>gi|182677341|ref|YP_001831487.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633224|gb|ACB93998.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 233

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  E+ G    L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVIMTGDLIVNLDQKTVEICGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
             DE  E  +++  I KLRKKL N
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203


>gi|123442021|ref|YP_001006004.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332162074|ref|YP_004298651.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122088982|emb|CAL11793.1| response regulator protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318606122|emb|CBY27620.1| transcriptional regulatory protein PhoP [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666304|gb|ADZ42948.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860072|emb|CBX70398.1| transcriptional regulatory protein phoP [Yersinia enterocolitica
           W22703]
          Length = 223

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHEGEVITTIRGQGYRFDAN 223


>gi|91680588|emb|CAJ45044.1| PhoP protein [Streptomyces natalensis]
          Length = 223

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 59  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 119 PEEVAPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 206


>gi|119470711|ref|ZP_01613379.1| response regulator [Alteromonadales bacterium TW-7]
 gi|119446181|gb|EAW27459.1| response regulator [Alteromonadales bacterium TW-7]
          Length = 219

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 109/222 (49%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D  LV  G       +G S+E   +++       S   ++  ++  L  G G ++
Sbjct: 3   LLLVEDDHLVAQGLCRSLRQEGYSVEHSATVKHALQCLGSGEIELVILDLGLPDGDGSQI 62

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   + I+A  +V P++ ++   S++  +   D G +D + KP    E+ AR+    RR+
Sbjct: 63  L---KHIKAQKKVIPVVILTARSSIEDKVQGLDMGAEDYLAKPFEPAELFARLRVASRRV 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  ++  + G + + +      +   +  LPR+E  +L+ L+ N+G+  +K Q+ + +Y
Sbjct: 120 NQAQSSLLQCGEVTMDTSAHSVTLNDGLLSLPRKEYMLLKALLENQGRVQSKQQLENKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + E V  N +E HI  LRKK  +    D + + R +GY +
Sbjct: 180 Q-WGEEVGSNTIEVHIHHLRKKFPS----DFIKTLRGIGYVV 216


>gi|228983771|ref|ZP_04143968.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775966|gb|EEM24335.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 5/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + RI     + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR    
Sbjct: 68  IQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSL 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G 
Sbjct: 128 TTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVWG- 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           FD      +VE ++  LRKKL    G+   + + R +GY
Sbjct: 187 FDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224


>gi|229171355|ref|ZP_04298940.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612059|gb|EEK69296.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 229

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 77  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 137 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 195

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224


>gi|118476259|ref|YP_893410.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118415484|gb|ABK83903.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 232

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 80  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 139

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 140 GIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 198

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 199 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 227


>gi|225027370|ref|ZP_03716562.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
 gi|224955313|gb|EEG36522.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
          Length = 225

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 9/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR +SQVP+I ++        L+ FD GVD+ ++KP   + ++ARV AI RR   SNN +
Sbjct: 70  IRQYSQVPIIMLTAKGEESDELNGFDLGVDEYISKPFSPKILVARVEAILRR---SNNLS 126

Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G I +     +  + G+   L  +E  +L Y + N+G  +++ +I + ++  +
Sbjct: 127 TGEVLKAGGIELDIAAHEVRIDGKEITLSFKEFELLNYFVVNQGVALSREKILNNVWN-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNK 204
           D   +   +++H+ KLR KL  K
Sbjct: 186 DYFGDARTIDTHVKKLRSKLGEK 208


>gi|34580940|ref|ZP_00142420.1| transcriptional activator protein czcR [Rickettsia sibirica 246]
 gi|28262325|gb|EAA25829.1| transcriptional activator protein czcR [Rickettsia sibirica 246]
          Length = 237

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  + P++ +S        +  F SG DD + KP    E++AR+ AI RR   S
Sbjct: 63  LLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A +      + V  D R  EV G+   L  +E  ILE L+  RG  + K    + +Y
Sbjct: 120 KGHAASVFRFDKVSVNLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              DE  E  +++  I KLRKKL +   G D +D+    GY +
Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAACGRDYIDTVWGRGYML 221


>gi|45441575|ref|NP_993114.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51596756|ref|YP_070947.1| DNA-binding transcriptional regulator PhoP [Yersinia
           pseudotuberculosis IP 32953]
 gi|145599096|ref|YP_001163172.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis
           Pestoides F]
 gi|153948628|ref|YP_001400585.1| PhoP family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162418657|ref|YP_001607237.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis Angola]
 gi|186895824|ref|YP_001872936.1| DNA-binding transcriptional regulator PhoP [Yersinia
           pseudotuberculosis PB1/+]
 gi|229894482|ref|ZP_04509664.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Pestoides A]
 gi|14133539|gb|AAK54056.1|AF333124_1 regulator protein PhoP [Yersinia pseudotuberculosis]
 gi|14133543|gb|AAK54058.1|AF333125_1 regulator protein PhoP [Yersinia pseudotuberculosis]
 gi|45436436|gb|AAS61991.1| response regulator protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590038|emb|CAH21672.1| response regulator protein [Yersinia pseudotuberculosis IP 32953]
 gi|145210792|gb|ABP40199.1| response regulator protein [Yersinia pestis Pestoides F]
 gi|152960123|gb|ABS47584.1| transcriptional regulatory protein PhoP [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351472|gb|ABX85420.1| transcriptional regulatory protein PhoP [Yersinia pestis Angola]
 gi|186698850|gb|ACC89479.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229703501|gb|EEO90518.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Pestoides A]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRGQGYRFDVN 223


>gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 GIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|221195264|ref|ZP_03568320.1| DNA-binding response regulator [Atopobium rimae ATCC 49626]
 gi|221185167|gb|EEE17558.1| DNA-binding response regulator [Atopobium rimae ATCC 49626]
          Length = 257

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 21/169 (12%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L+L R +R  HS+  ++ +S   S+   +   D+G DD + KP    E+ AR+  + RR 
Sbjct: 88  LDLLRTLRREHSETKVLILSARSSVADRIVGLDAGADDYLVKPFAFGELEARIRNLLRRE 147

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L     R +T   +VF+  +D EV      L ++E  ILEYLM   G  V+  
Sbjct: 148 YTHGETSLVSGELRLDTASRQVFA--KDSEVN-----LTKKETAILEYLMRRAGTVVSSE 200

Query: 172 QIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ S  +   D  V+   N V  HI  +RKKLR  LG+DP+ +K   GY
Sbjct: 201 ELLSHAW---DSNVDPFSNSVRVHIFSVRKKLREVLGYDPISNKVGEGY 246


>gi|310816018|ref|YP_003963982.1| cell cycle transcriptional regulator CtrA [Ketogulonicigenium
           vulgare Y25]
 gi|308754753|gb|ADO42682.1| cell cycle transcriptional regulator CtrA [Ketogulonicigenium
           vulgare Y25]
          Length = 238

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 4/153 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL   R+ R  +  P++ +S      + L  F  G DD + KP    E++AR+ AI 
Sbjct: 59  GHDVLRQLRLARVDT--PILILSGSDDTDSKLKGFGFGADDYMTKPFQREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +   TG I V  D +  +V+G    L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVINTGRIAVNLDTKTVDVEGAPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            +YG  DE  E  +++  I KLRKKL    G D
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSVATGGD 208


>gi|49484576|ref|YP_041800.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257423843|ref|ZP_05600272.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426526|ref|ZP_05602928.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431808|ref|ZP_05608171.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257434768|ref|ZP_05610819.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282902273|ref|ZP_06310166.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906702|ref|ZP_06314550.1| heme response regulator hssR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909678|ref|ZP_06317487.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911924|ref|ZP_06319720.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282915220|ref|ZP_06322997.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M899]
 gi|282920944|ref|ZP_06328662.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925850|ref|ZP_06333498.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C101]
 gi|283959142|ref|ZP_06376583.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497616|ref|ZP_06665470.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511195|ref|ZP_06669891.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus M809]
 gi|293549803|ref|ZP_06672475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428942|ref|ZP_06821566.1| two-component system response regulator colocalized with HrtAB
           transporter [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|81696435|sp|Q6GE73|HSSR_STAAR RecName: Full=Heme response regulator hssR
 gi|49242705|emb|CAG41429.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272861|gb|EEV04963.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276157|gb|EEV07608.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257282687|gb|EEV12819.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285364|gb|EEV15480.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282312679|gb|EFB43083.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315359|gb|EFB45743.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C427]
 gi|282320941|gb|EFB51275.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M899]
 gi|282323620|gb|EFB53936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326252|gb|EFB56556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329601|gb|EFB59122.1| heme response regulator hssR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596732|gb|EFC01691.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           C160]
 gi|283788734|gb|EFC27561.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290918850|gb|EFD95926.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096547|gb|EFE26805.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465821|gb|EFF08351.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus M809]
 gi|295127291|gb|EFG56933.1| two-component system response regulator colocalized with HrtAB
           transporter [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|315193627|gb|EFU24023.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 224

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L    R D++ ++  +   G    +L   ++    +P+I ++   +L      F SG DD
Sbjct: 40  LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156
            V KP   +E++ R+ A+ RR  +++N   T G + +     + +V  +   LP +E ++
Sbjct: 98  YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157

Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           L +++A R K++  + QI   I+G +D   +E  V+ HI +LR++L+       +++ R 
Sbjct: 158 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215

Query: 216 LGYSID 221
            GY ++
Sbjct: 216 QGYKVE 221


>gi|311278058|ref|YP_003940289.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308747253|gb|ADO47005.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 219

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G +L+ F   E  +    +A  D   ++  L   G   L
Sbjct: 3   ILLVEDDKLIGDGLRAGLVKMGFTLDWFTRGEEGKAALLAAPYDAVILDLTL--PGIDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  RA   Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILRAWRAQGRQEPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  + G + +  D       G   PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQATNALQHGKVTLNPDSLTATFDGAPLPLKPKEFALLELLMRNAGRVLPRKLIEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 181 -WDDDVSSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|301052222|ref|YP_003790433.1| putative response regulator [Bacillus anthracis CI]
 gi|300374391|gb|ADK03295.1| probable response regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|270293142|ref|ZP_06199353.1| DNA-binding response regulator VncR [Streptococcus sp. M143]
 gi|270279121|gb|EFA24967.1| DNA-binding response regulator VncR [Streptococcus sp. M143]
          Length = 218

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 106/219 (48%), Gaps = 6/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGISDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   +
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                    +V  +     + GE   +  +E  IL+YL+ N G+ + ++QI  A++ + D
Sbjct: 122 GRVFSYKDTKVDFESYSASLAGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKVTD 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|229182901|ref|ZP_04310134.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228600525|gb|EEK58112.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 229

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 77  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 137 GIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 195

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224


>gi|255306708|ref|ZP_05350879.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 85/153 (55%), Gaps = 7/153 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAETG 129
            P++ ++   +L   ++ F  G +D + KP +  E++ARV AI R   ++K   N  E  
Sbjct: 72  TPVLILTAKETLDDKVEAFTIGANDYLTKPFYMEELVARVYAILRTNGKIK-ERNGLEFK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + + +  +   ++ E   L  ++  +LEY + N+G  + K QI+  I+G+  +A  E +
Sbjct: 131 SLYLDTLEKRVYIEKEEIKLQNKQFNLLEYFVLNKGSILLKEQIYDRIWGIDSDATIE-I 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           VE ++S LRKKL +K G+D  + +KR +GY  D
Sbjct: 190 VEVYVSNLRKKL-SKYGYDKYIKTKRKVGYIFD 221


>gi|153010000|ref|YP_001371215.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561888|gb|ABS15386.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 230

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR    +++  
Sbjct: 68  RSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEL 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+ + +      V G    L   E R+L YLM +  + V++T++   +Y   FD   
Sbjct: 128 VCGPLYLDTKTSKASVNGVALKLTSHEYRLLSYLMHHMDEVVSRTELIEHLYDQDFDR-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + +LRK    K+G D +++ R +GY I
Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRI 216


>gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|163939206|ref|YP_001644090.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861403|gb|ABY42462.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 63  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE  PL  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 123 KQEQQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204


>gi|65317995|ref|ZP_00390954.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|228913258|ref|ZP_04076894.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228931999|ref|ZP_04094891.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944325|ref|ZP_04106698.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815227|gb|EEM61475.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827582|gb|EEM73324.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228846397|gb|EEM91413.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 229

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 77  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 137 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 195

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224


>gi|298290736|ref|YP_003692675.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927247|gb|ADH88056.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  R   ++P++ ++        +  FD+G DD V KP H  E+LAR+ A+ 
Sbjct: 59  GLSVLEAWR--REGRKMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARIRALL 116

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    + +    GP+ + +      V G    L   E R+L YLM + G+ V++T++  
Sbjct: 117 RRSAGHAASELTCGPVMLDTRSGRVTVDGRQVKLTSHEHRLLAYLMHHSGRVVSRTELVE 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   FD   + N +E  + +LRKKL  ++    + + R LGY
Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRLRKKLDVEV----IQTVRGLGY 214


>gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 17/215 (7%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L  +GY  L  ++G + LE FN+             D+S I   ++        L + IR
Sbjct: 21  LENNGYEVLVAENGKIGLEYFNN-----------NNDISIILLDIMLPDISGWSLLKTIR 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRA 126
             S+VP++ I+        L  F+ G DD V KP   +E++ARV AI  R    +   + 
Sbjct: 70  EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTSGESEVEKT 129

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           E   I +    R   V GE   L  +E  +L+ L+ N+GK V++ +  + ++G +D   +
Sbjct: 130 EYEGISINVSSRQVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG-YDFYGD 188

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              V++HI +LR+KL  K     + +   +GY +D
Sbjct: 189 LRTVDTHIKQLREKLGEKRKL--IKTVWGIGYKLD 221


>gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD + KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRELRTTSNVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVLRRNAE 121

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E+GP+R+  D     V G   PLP +E  +LE  + N G+ + + Q+   +
Sbjct: 122 PTDPMVTVLESGPVRMDVDRHVVSVGGAEIPLPLKEFELLEMFLRNSGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+  + G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRSKIETEPG 209


>gi|92116986|ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799880|gb|ABE62255.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  R    +P++ ++        +  FD+G DD V KP H  EILAR+ A+ 
Sbjct: 59  GISVLEAWR--RNDRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALL 116

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++  
Sbjct: 117 RRSTGHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHTGRVVSRTELVE 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   FD   + N +E  + ++RK    KL  D + + R LGY
Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRK----KLDVDIIQTVRGLGY 214


>gi|30260728|ref|NP_843105.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525845|ref|YP_017194.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183566|ref|YP_026818.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871773|ref|ZP_02216417.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635679|ref|ZP_02393990.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640647|ref|ZP_02398908.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688512|ref|ZP_02879719.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708249|ref|ZP_02898695.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653779|ref|ZP_02935880.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568234|ref|ZP_03021143.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196035780|ref|ZP_03103183.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041341|ref|ZP_03108635.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227816558|ref|YP_002816567.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229600912|ref|YP_002865173.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684351|ref|ZP_05148211.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722153|ref|ZP_05183942.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738815|ref|ZP_05196518.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743799|ref|ZP_05201483.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755039|ref|ZP_05207073.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762227|ref|ZP_05214071.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254096|gb|AAP24591.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500993|gb|AAT29669.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177493|gb|AAT52869.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712498|gb|EDR18031.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511362|gb|EDR86747.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528938|gb|EDR91694.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126905|gb|EDS95786.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667537|gb|EDT18293.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081171|gb|EDT66247.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560726|gb|EDV14702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991747|gb|EDX55712.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196027826|gb|EDX66439.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227006713|gb|ACP16456.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265320|gb|ACQ46957.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|225862542|ref|YP_002747920.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225787819|gb|ACO28036.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|17548109|ref|NP_521511.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17430416|emb|CAD16889.1| probable response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 224

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 4/147 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPI 131
           VP++ ++    +   +    +G DD + KP   RE++AR+  + RR   +N    + G +
Sbjct: 73  VPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNTPANAVELQCGDL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              +  R   + G    LP RE  +LE LM   G+ V+K  + + ++GL D+A  E  +E
Sbjct: 133 SYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFGLEDDASPE-AIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +I +LRKKL +      + + R LGY
Sbjct: 192 IYIHRLRKKLEHSAA--TIVTLRGLGY 216


>gi|324324610|gb|ADY19870.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 228

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 13/167 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + +
Sbjct: 63  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQGA 122

Query: 123 NNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       G I +        V+GE    P +E  +LEYLM N+G+ + + Q+   I+G
Sbjct: 123 VDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQLIDRIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
             D   +   ++ H+    K++R+K+  DP     + + R LGY ID
Sbjct: 183 -SDYVGDTKTLDVHV----KRVRSKIEEDPAHPQYLTTVRGLGYKID 224


>gi|218901766|ref|YP_002449600.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539476|gb|ACK91874.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|270296301|ref|ZP_06202501.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273705|gb|EFA19567.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 225

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 6/152 (3%)

Query: 55  GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G G  +L EL R+ R+ S   ++ IS   SL   +D  + G DD + KP H  E+ ARV 
Sbjct: 57  GSGLDLLRELKRLHRSDS---VLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARVK 113

Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++ RR +   +   T G + ++ D R  E+ G+   L R+E  +L Y + N G+ + K  
Sbjct: 114 SLIRRRQAKGDVTVTLGNLLLYPDKRQVEINGKPLQLNRKEFDLLYYFVVNPGRVINKMS 173

Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
           +  +++G   D+A   + + S +  LRKKL+ 
Sbjct: 174 LAESVWGDNIDQADSLDFIYSQVKNLRKKLKQ 205


>gi|228925760|ref|ZP_04088844.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120222|ref|ZP_04249473.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663263|gb|EEL18852.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228833775|gb|EEM79328.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 229

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 77  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 137 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 195

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224


>gi|187930667|ref|YP_001901154.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241664859|ref|YP_002983219.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309780335|ref|ZP_07675086.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|187727557|gb|ACD28722.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240866886|gb|ACS64547.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308921038|gb|EFP66684.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 6/164 (3%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G+ VL+  R+    + VP++ ++    +   +    +G DD + KP   RE++AR+  +
Sbjct: 58  SGQGVLQ--RLRGRRNPVPVLILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVL 115

Query: 116 YRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR     +   + G +   +  R   + G+   LP RE  +LE LM   G+ V+K  + 
Sbjct: 116 VRRSTPDQSVELQCGDLTYHTGSRTFNLAGQPLVLPAREHTVLEILMLKLGRTVSKPALV 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + ++G+ DEA  E  +E +I +LRKKL +      + + R LGY
Sbjct: 176 NGVFGMDDEASPE-AIEIYIHRLRKKLEHSAA--TIVTLRGLGY 216


>gi|227510515|ref|ZP_03940564.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227513524|ref|ZP_03943573.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083397|gb|EEI18709.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227190167|gb|EEI70234.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 228

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 11/185 (5%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+++   L     LQ++  E+   I   L+      +E+ R +R     P+I ++   S
Sbjct: 24  EGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGMEVARRLREKKNTPIIMMTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-------IRVFSD 136
           +   +  FD G DD + KP    E+LAR+ A+ RR+++ N++ ++         + +  +
Sbjct: 84  VIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQIENDQQKSSKKSVTFKDLTIEKE 143

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R      EV  L +RE  +L  LM N    +A+  + + ++G +D  VE NVV+ +I  
Sbjct: 144 SRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLLTKVWG-YDSEVETNVVDVYIRY 202

Query: 197 LRKKL 201
           LR K+
Sbjct: 203 LRNKI 207


>gi|169350865|ref|ZP_02867803.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
 gi|169292451|gb|EDS74584.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
          Length = 216

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R   Q P+I ++    +   ++    G DD + KP    E+LAR+ A+ RR+ 
Sbjct: 59  IEVCRQLRLKKQTPIIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRVS 118

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N   + + G I +       + + E   L   E  +L  L+ N G  V K  I + ++
Sbjct: 119 NQNKSLKYKYGEIEIDVINHHVKFKDETITLTTTEFDLLSLLVQNGGNIVTKNDILNKVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +++ V  NVVE +I    + LRNKL    +++ R +GY +
Sbjct: 179 G-YEKNVSTNVVEVYI----RYLRNKLAGINIETIRGIGYRL 215


>gi|163814202|ref|ZP_02205594.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
 gi|158450651|gb|EDP27646.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
          Length = 235

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 3/140 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           IR  SQVP+I ++     +  L  F+ GVD+ + KP   + ++ARVAAI RR     S  
Sbjct: 80  IRKFSQVPVIMLTAKADERDELQGFNLGVDEYITKPFSPKILVARVAAILRRTSDAASEE 139

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           R   G I +        + G+   L  +E  +L+Y + NRG  +++ +I + ++  +D  
Sbjct: 140 RLSAGGIDMDLSAHIVTIDGKPVELSFKEFELLQYFIVNRGVALSREKILNNVWN-YDYY 198

Query: 185 VEENVVESHISKLRKKLRNK 204
            +   +++H+ KLR K+  K
Sbjct: 199 GDARTIDTHVKKLRSKMGAK 218


>gi|126699294|ref|YP_001088191.1| two-component response regulator [Clostridium difficile 630]
 gi|254975324|ref|ZP_05271796.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092715|ref|ZP_05322193.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255100819|ref|ZP_05329796.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255314453|ref|ZP_05356036.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517130|ref|ZP_05384806.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650235|ref|ZP_05397137.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683353|ref|YP_003214638.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686948|ref|YP_003218081.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520214|ref|ZP_07406561.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115250731|emb|CAJ68555.1| Two-component response regulator [Clostridium difficile]
 gi|260209516|emb|CBA63087.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212964|emb|CBE04255.1| two-component response regulator [Clostridium difficile R20291]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 85/152 (55%), Gaps = 7/152 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAETGP 130
           P++ ++   +L   ++ F  G +D + KP +  E++ARV AI R   ++K   N  E   
Sbjct: 73  PVLILTAKETLDDKVEAFTIGANDYLTKPFYMEELVARVYAILRTNGKIK-ERNGLEFKS 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + +  +   ++ E   L  ++  +LEY + N+G  + K QI+  I+G+  +A  E +V
Sbjct: 132 LYLDTLEKRVYIEKEEIKLQNKQFNLLEYFVLNKGSILLKEQIYDRIWGIDSDATIE-IV 190

Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           E ++S LRKKL +K G+D  + +KR +GY  D
Sbjct: 191 EVYVSNLRKKL-SKYGYDKYIKTKRKVGYIFD 221


>gi|319403800|emb|CBI77384.1| cell cycle transcriptional regulator CtrA [Bartonella rochalimae
           ATCC BAA-1498]
          Length = 233

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 21/191 (10%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           YI   G++G+ L      +++  L      D+S  E        + L L +I     + P
Sbjct: 28  YITDLGEEGIDLGKL--YDYDIILLDLNLPDMSGYEVL------RTLRLEKI-----KTP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130
           ++ +S    ++  +  F  G DD + KP H  E++AR+ A+ RR   S   A+    TG 
Sbjct: 75  VLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRR---SKGHAQSVIITGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +  E+ G    L  +E ++LE L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 LTVNLDAKTVEIAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKL 201
           +  I KLRKKL
Sbjct: 191 DVFICKLRKKL 201


>gi|307944614|ref|ZP_07659954.1| cell cycle transcriptional regulator CtrA [Roseibium sp. TrichSKD4]
 gi|307772363|gb|EFO31584.1| cell cycle transcriptional regulator CtrA [Roseibium sp. TrichSKD4]
          Length = 230

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ +   + P++ +S    ++  +     G DD + KP H  E++AR+ AI 
Sbjct: 59  GYEVLRTLRVSKV--KTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +   TG ++V  D +  EV G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVIVTGDLKVNLDTKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
 gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
          Length = 233

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 10/168 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + +
Sbjct: 63  LCRRIREQSRVPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQSA 122

Query: 123 NNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +           G I +        V+GE    P +E  +LEYLM N+G+ + + Q+ 
Sbjct: 123 QQQGSADDDVPLTCGDIVMRVGQHQVIVRGESVFFPLKEFELLEYLMQNKGRVLTRHQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 183 DRIWG-ADYVGDTKTLDVHVKRVRAKIEEEPSHPKYLSTVRGLGYKID 229


>gi|42779713|ref|NP_976960.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735630|gb|AAS39568.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|56460749|ref|YP_156030.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56179759|gb|AAV82481.1| Response regulator (CheY, wHTH domains) [Idiomarina loihiensis
           L2TR]
          Length = 221

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 11/220 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG--KGEK 59
            +L++D   + +G I      G  +E   +L   E   S+ + D   +  F +G   G  
Sbjct: 3   LLLLEDDKTLAEGIIKGLNRMGYMVELAMNLSQAE---SALKTDQFELAIFDLGLPDGNA 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           V  + ++ +A   VP++ ++ +  + T +   + G +D V KP   RE+ ARV    R+ 
Sbjct: 60  VSLIKKLRKAGQPVPIVVLTAWDDVDTKVLALNEGANDYVVKPFELRELEARVRVQVRKA 119

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N+    G + V    +    Q ++  L R E  +L+ L  + GK V+K Q+ +A Y
Sbjct: 120 NLQLNDVINCGDLSVDIASQQCRFQRKLINLTRLEWILLKQLALHVGKIVSKEQLETACY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G +D   E N +E HI  LRKKL   L    + + R LGY
Sbjct: 180 G-WDSDNESNSLEVHIHHLRKKLNPSL----ITTIRGLGY 214


>gi|167037940|ref|YP_001665518.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116355|ref|YP_004186514.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856774|gb|ABY95182.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929446|gb|ADV80131.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 224

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 18/216 (8%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L  +GY  L  ++G + LE FN+            +D+S I   ++        L + IR
Sbjct: 21  LENNGYEVLVAENGKIGLEYFNN-----------NKDISIILLDIMLPDISGWSLLKTIR 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NR 125
             S+VP++ I+        L  F+ G DD V KP   +E++ARV AI  R   ++    +
Sbjct: 70  EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGASEEEGK 129

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++G +D   
Sbjct: 130 TEYEGISINVSFREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG-YDFYG 188

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 189 DLRTVDTHIKQLREKLGEKRKL--IKTVWGIGYKLD 222


>gi|134291674|ref|YP_001115443.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134863|gb|ABO59188.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 220

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 18/172 (10%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G ++L   R  R H+  P++ ++   ++   +    +G DD + KP    E++AR  A+
Sbjct: 58  SGVELLAWLRKRRDHT--PVLVMTARDTVADRVSGLSAGADDYLGKPFDLTELVARCRAL 115

Query: 116 YRRLKV-SNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVA 169
            RR +  S +  E G + V     DP +       E   L  RE  +L  L++N+G+ ++
Sbjct: 116 VRRSQGRSTDTIEYGDLSV-----DPALMTATRGAERIALTSRECALLVELLSNQGRPLS 170

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + Q+  ++YG ++E +E N +E H+S LRK    KLG D + + R +GY ++
Sbjct: 171 RAQLQDSLYG-WNEEIESNAIEVHVSNLRK----KLGADLIRTIRGVGYVVE 217


>gi|331002395|ref|ZP_08325913.1| hypothetical protein HMPREF0491_00775 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410211|gb|EGG89645.1| hypothetical protein HMPREF0491_00775 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 220

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL+  R   A S+V ++   D  +L   +   D G +D + KP H RE+ AR+  + 
Sbjct: 59  GLEVLKTIREDNAESKVIILSARD--TLNDKVLGLDLGANDYLVKPFHFRELEARIRVLL 116

Query: 117 RRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R    +N+   R E+  I ++   +  +  GE+ PL  +E  I EYL  N+G  ++  ++
Sbjct: 117 RNNYSTNDDTIRIESQDITLYLSKKQVQKGGEIIPLTPKEYSIFEYLCINKGNLISTGEL 176

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                 + +      V++ HI+ +RK    KLG D + + R +GY+I+
Sbjct: 177 LEHNIDM-NANDASTVIKVHIAAIRK----KLGSDVIKTNRGMGYTIN 219


>gi|291445797|ref|ZP_06585187.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348744|gb|EFE75648.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 59  EVCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 179 WGA-DYVGDTKTLDVHVKRLRAKIEPDPG 206


>gi|238758418|ref|ZP_04619595.1| Two-component response regulator of virulence determinant [Yersinia
           aldovae ATCC 35236]
 gi|238703322|gb|EEP95862.1| Two-component response regulator of virulence determinant [Yersinia
           aldovae ATCC 35236]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D AL++        + G  ++   ++ E + +LQ  A  D++ I+  L   GE  L
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDTKEADYFLQEHA-PDIAIIDLGL--PGEDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR +
Sbjct: 61  SLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNI 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 -DAELRESHTIDVLMGRLRKKLLAEHEGEVITTIRGQGYRFDAN 223


>gi|255655706|ref|ZP_05401115.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296451712|ref|ZP_06893444.1| DNA-binding response regulator [Clostridium difficile NAP08]
 gi|296878956|ref|ZP_06902955.1| DNA-binding response regulator [Clostridium difficile NAP07]
 gi|296259475|gb|EFH06338.1| DNA-binding response regulator [Clostridium difficile NAP08]
 gi|296430069|gb|EFH15917.1| DNA-binding response regulator [Clostridium difficile NAP07]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 85/153 (55%), Gaps = 7/153 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAETG 129
            P++ ++   +L   ++ F  G +D + KP +  E++ARV AI R   ++K   N  E  
Sbjct: 72  TPVLILTAKETLDDKVEAFTIGANDYLTKPFYMEELVARVYAILRTNGKIK-ERNGLEFK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + + +  +   ++ E   L  ++  +LEY + N+G  + K QI+  I+G+  +A  E +
Sbjct: 131 SLYLDTLEKRVYIEKEEIKLQNKQFNLLEYFVLNKGSILLKEQIYDRIWGIDSDATIE-I 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           VE ++S LRKKL +K G+D  + +KR +GY  D
Sbjct: 190 VEVYVSNLRKKL-SKYGYDKYIKTKRKVGYIFD 221


>gi|218662767|ref|ZP_03518697.1| probable two-component response regulator protein [Rhizobium etli
           IE4771]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 111/227 (48%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58
            +LI+D   + +   A  G  G+  +  +++   + ++ + +    AI   L   +  GE
Sbjct: 3   ILLIEDEKELAEALTAALGKHGIVTD--HTVHLADAVELTRQNPYDAI--LLDRRLPDGE 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +  +P + R     P+I ++   + +  ++  D G DD + KP    E++AR+ A+ RR
Sbjct: 59  GLRFIPELRRTGKDTPIIVLTALNAPKERVEGLDLGADDYLGKPFLVEELMARLRAVLRR 118

Query: 119 ------LKVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 LK++  R    P+ +  + G  P        LPRRE  +L  L   + K V ++
Sbjct: 119 PPSLSELKITAGRMVIDPLHLSVTVGDTP------LDLPRRELLVLAALARRKEKTVLRS 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + +A+Y  ++E ++ N +++HIS+LRK+L +      + + R +GY
Sbjct: 173 TLEAAVYN-YEEEIQSNALDAHISRLRKRLADAGAEVSIHNIRGVGY 218


>gi|166033420|ref|ZP_02236249.1| hypothetical protein DORFOR_03146 [Dorea formicigenerans ATCC
           27755]
 gi|166026605|gb|EDR45362.1| hypothetical protein DORFOR_03146 [Dorea formicigenerans ATCC
           27755]
          Length = 228

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 87/161 (54%), Gaps = 6/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + +++ +  ++ +S    +   ++  D+G +D + KP H +E+ AR+ ++ RR  V 
Sbjct: 65  LKELRQSNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFVQ 124

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   E+G I+  +  R+   +     L R+E+ ILEYL+ N G+ V++ ++   ++   
Sbjct: 125 KDVCLESGDIKFDTIKREAYAKEIKISLTRKEKGILEYLLLNLGRPVSQEELMEHVW--- 181

Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D +V+     +  H+S LR+KL+  LG D + +K   GY I
Sbjct: 182 DASVDSFSGAIRVHMSSLRRKLKAVLGHDVIMNKVGEGYKI 222


>gi|15925351|ref|NP_372885.1| two component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927941|ref|NP_375474.1| hypothetical protein SA2151 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21284011|ref|NP_647099.1| hypothetical protein MW2282 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487144|ref|YP_044365.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87161981|ref|YP_494943.1| response regulator protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88196283|ref|YP_501105.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148268798|ref|YP_001247741.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394868|ref|YP_001317543.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156980676|ref|YP_001442935.1| hypothetical protein SAHV_2345 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510555|ref|YP_001576214.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142609|ref|ZP_03567102.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253314701|ref|ZP_04837914.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255007137|ref|ZP_05145738.2| response regulator protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257794703|ref|ZP_05643682.1| response regulator receiver [Staphylococcus aureus A9781]
 gi|258407383|ref|ZP_05680526.1| two-component system response regulator receiver [Staphylococcus
           aureus A9763]
 gi|258422289|ref|ZP_05685201.1| response regulator protein [Staphylococcus aureus A9719]
 gi|258439681|ref|ZP_05690427.1| two component response regulator [Staphylococcus aureus A9299]
 gi|258442762|ref|ZP_05691322.1| heme response regulator hssR [Staphylococcus aureus A8115]
 gi|258446538|ref|ZP_05694693.1| two component response regulator [Staphylococcus aureus A6300]
 gi|258450345|ref|ZP_05698437.1| two component transcriptional regulator [Staphylococcus aureus
           A6224]
 gi|258451333|ref|ZP_05699366.1| response regulator receiver [Staphylococcus aureus A5948]
 gi|258455279|ref|ZP_05703239.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|262048779|ref|ZP_06021660.1| hypothetical protein SAD30_0626 [Staphylococcus aureus D30]
 gi|262051514|ref|ZP_06023735.1| hypothetical protein SA930_1282 [Staphylococcus aureus 930918-3]
 gi|269203993|ref|YP_003283262.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893807|ref|ZP_06302039.1| heme response regulator hssR [Staphylococcus aureus A8117]
 gi|282917713|ref|ZP_06325464.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920347|ref|ZP_06328070.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A9765]
 gi|282926915|ref|ZP_06334542.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A10102]
 gi|283767450|ref|ZP_06340365.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|284025384|ref|ZP_06379782.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|294848904|ref|ZP_06789649.1| two-component system [Staphylococcus aureus A9754]
 gi|295405048|ref|ZP_06814861.1| two-component system [Staphylococcus aureus A8819]
 gi|296275447|ref|ZP_06857954.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297244105|ref|ZP_06927995.1| two-component system [Staphylococcus aureus A8796]
 gi|81696274|sp|Q6G6V9|HSSR_STAAS RecName: Full=Heme response regulator hssR
 gi|81704182|sp|Q7A039|HSSR_STAAW RecName: Full=Heme response regulator hssR
 gi|81705166|sp|Q7A3X1|HSSR_STAAN RecName: Full=Heme response regulator hssR
 gi|81781023|sp|Q99RR6|HSSR_STAAM RecName: Full=Heme response regulator hssR
 gi|122538783|sp|Q2FVQ9|HSSR_STAA8 RecName: Full=Heme response regulator hssR
 gi|123484649|sp|Q2FED5|HSSR_STAA3 RecName: Full=Heme response regulator hssR
 gi|187609569|sp|A7X5Y5|HSSR_STAA1 RecName: Full=Heme response regulator hssR
 gi|187609570|sp|A6U488|HSSR_STAA2 RecName: Full=Heme response regulator hssR
 gi|187609571|sp|A5IVE2|HSSR_STAA9 RecName: Full=Heme response regulator hssR
 gi|187609573|sp|A8Z552|HSSR_STAAT RecName: Full=Heme response regulator hssR
 gi|13702312|dbj|BAB43453.1| SA2151 [Staphylococcus aureus subsp. aureus N315]
 gi|14248135|dbj|BAB58523.1| similar to two component response regulator [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21205454|dbj|BAB96147.1| MW2282 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245587|emb|CAG44065.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87127955|gb|ABD22469.1| response regulator protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203841|gb|ABD31651.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741867|gb|ABQ50165.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947320|gb|ABR53256.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722811|dbj|BAF79228.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369364|gb|ABX30335.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257788675|gb|EEV27015.1| response regulator receiver [Staphylococcus aureus A9781]
 gi|257840895|gb|EEV65346.1| two-component system response regulator receiver [Staphylococcus
           aureus A9763]
 gi|257841720|gb|EEV66157.1| response regulator protein [Staphylococcus aureus A9719]
 gi|257847457|gb|EEV71459.1| two component response regulator [Staphylococcus aureus A9299]
 gi|257851883|gb|EEV75817.1| heme response regulator hssR [Staphylococcus aureus A8115]
 gi|257854606|gb|EEV77554.1| two component response regulator [Staphylococcus aureus A6300]
 gi|257856437|gb|EEV79346.1| two component transcriptional regulator [Staphylococcus aureus
           A6224]
 gi|257861125|gb|EEV83940.1| response regulator receiver [Staphylococcus aureus A5948]
 gi|257862490|gb|EEV85258.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|259160498|gb|EEW45521.1| hypothetical protein SA930_1282 [Staphylococcus aureus 930918-3]
 gi|259163037|gb|EEW47598.1| hypothetical protein SAD30_0626 [Staphylococcus aureus D30]
 gi|262076283|gb|ACY12256.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269941947|emb|CBI50358.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282318468|gb|EFB48827.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus D139]
 gi|282591366|gb|EFB96439.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A10102]
 gi|282594293|gb|EFB99279.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A9765]
 gi|282763865|gb|EFC03993.1| heme response regulator hssR [Staphylococcus aureus A8117]
 gi|283461329|gb|EFC08413.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|285818024|gb|ADC38511.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus 04-02981]
 gi|294824283|gb|EFG40707.1| two-component system [Staphylococcus aureus A9754]
 gi|294969993|gb|EFG46011.1| two-component system [Staphylococcus aureus A8819]
 gi|297178883|gb|EFH38128.1| two-component system [Staphylococcus aureus A8796]
 gi|302752233|gb|ADL66410.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|312830708|emb|CBX35550.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128716|gb|EFT84717.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315197445|gb|EFU27782.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|329315049|gb|AEB89462.1| Heme response regulator hssR [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329723627|gb|EGG60156.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           21172]
 gi|329726694|gb|EGG63155.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           21189]
 gi|329730100|gb|EGG66490.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           21193]
          Length = 224

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L    R D++ ++  +   G    +L   ++    +P+I ++   +L      F SG DD
Sbjct: 40  LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156
            V KP   +E++ R+ A+ RR  +++N   T G + +     + +V  +   LP +E ++
Sbjct: 98  YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157

Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           L +++A R K++  + QI   I+G +D   +E  V+ HI +LR++L+       +++ R 
Sbjct: 158 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215

Query: 216 LGYSID 221
            GY ++
Sbjct: 216 QGYKVE 221


>gi|322389246|ref|ZP_08062806.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321143990|gb|EFX39408.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 251

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  KV+ N    G +
Sbjct: 98  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKVNENTLNYGNL 157

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V        V G+   L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 158 KVNLSTNSTYVDGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 216

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+     + + + R +GY
Sbjct: 217 VYVSKIRKKLKGTDFVESLQTLRSVGY 243


>gi|229010688|ref|ZP_04167886.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229057028|ref|ZP_04196422.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229132193|ref|ZP_04261050.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229166232|ref|ZP_04293991.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617177|gb|EEK74243.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651241|gb|EEL07219.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228720305|gb|EEL71881.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228750582|gb|EEM00410.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 218

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE  PL  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 59  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 206


>gi|84622740|ref|YP_450112.1| hypothetical protein XOO_1083 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366680|dbj|BAE67838.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 232

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLP 150
           D G DD + KP    E+LAR  A+ RR       A + G +R+   G      G    L 
Sbjct: 92  DVGADDYLGKPFDTNELLARTRALLRRSAGRTQPALQAGALRLDPAGMSVRWHGRDLDLT 151

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           RRE  +L  LM  RG+ + + +I   +YG +DE V  N V+ H+ +LR+KL   +    +
Sbjct: 152 RREFALLWLLMEQRGRPIGRERIQQHLYG-WDEDVASNAVDVHVHQLRRKLSAAV----I 206

Query: 211 DSKRFLGYSID 221
            + R +GY++D
Sbjct: 207 RTIRGIGYALD 217


>gi|299065128|emb|CBJ36292.1| putative response regulator, CheY family [Ralstonia solanacearum
           CMR15]
          Length = 224

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 4/147 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPI 131
           VP++ ++    +   +    +G DD + KP   RE++AR+  + RR   +N    + G +
Sbjct: 73  VPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNTPANAVELQCGDL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              +  R   + G    LP RE  +LE LM   G+ V+K  + + ++GL D+A  E  +E
Sbjct: 133 SYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFGLEDDASPE-AIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +I +LRKKL +      + + R LGY
Sbjct: 192 IYIHRLRKKLEHSAA--TIVTLRGLGY 216


>gi|295094962|emb|CBK84053.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 220

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 5/158 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S VP+I ++   S    +     G DD + KP +   +L R+AA+ +R++ S
Sbjct: 63  LVKEIRKESDVPIIMVTSRTSEMDEVLSMSYGADDYITKPYNPTILLLRIAAVLKRMEGS 122

Query: 123 NNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N A      V FS G   +   E+  L + E  I + L+ANR K V++ +I + ++   
Sbjct: 123 QNTASYRDAEVNFSKGTISKGDQEMV-LTKNEMIIFQLLLANREKIVSRDEIMTDLWD-N 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           DE V +N +  +IS+LR KL + LG+ D +++++  GY
Sbjct: 181 DEFVNDNALTVNISRLRGKLAD-LGYDDAIETRKKQGY 217


>gi|257440389|ref|ZP_05616144.1| subtilin biosynthesis regulatory protein SpaR [Faecalibacterium
           prausnitzii A2-165]
 gi|257197138|gb|EEU95422.1| subtilin biosynthesis regulatory protein SpaR [Faecalibacterium
           prausnitzii A2-165]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE    + R IR  +  P++ ++      + L+    G DD + KP    E+ ARVAA  
Sbjct: 56  GEDGFAVCRRIRGLTDAPILFLTARTDEASVLEGLGIGADDYLAKPFRVAELRARVAAHL 115

Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR  +   +R   G +      R+  V     PL R E  I EYL  + G+   K QI+ 
Sbjct: 116 RRQNRTPVHRLVRGGVSFDLSAREAAVGETPLPLTRSEYAICEYLALHAGQTFTKEQIYE 175

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR 202
           A++G+ D   ++  V  HI  +R KLR
Sbjct: 176 AVFGI-DGTADDTAVTQHIKNIRSKLR 201


>gi|229089633|ref|ZP_04220895.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693663|gb|EEL47364.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 229

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 77  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 137 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 195

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224


>gi|254524029|ref|ZP_05136084.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp.
           SKA14]
 gi|219721620|gb|EED40145.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp.
           SKA14]
          Length = 237

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 27/192 (14%)

Query: 35  EEWLQSSAREDVSAIEAFLIG----KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF 90
           +E LQ +A ED+  +    IG    +G +VLE    +R  SQVP+I ++        +  
Sbjct: 46  QEGLQLAASEDMDLV-ILDIGLPDMEGHEVLEQ---LRQWSQVPVIMLTVRAGEAEKVRA 101

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEV 142
            D+G +D V KP   +E++ARV A+ R   V ++    G   VF DG        R+  +
Sbjct: 102 LDTGANDYVTKPFGTQELMARVRALLRTRSVPSD----GTPPVFDDGHLHVDLVRREVAL 157

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK-LRKKL 201
            GE   L R+E  +L  L+ N G+ V + QI   I+G   +       ++H  + L  KL
Sbjct: 158 DGEPVALTRKEYALLSLLLRNAGRVVTQPQILQEIWGPTHQQ------DTHYLRILVGKL 211

Query: 202 RNKLGFDPVDSK 213
           R+KLG   +DS+
Sbjct: 212 RHKLGDSALDSR 223


>gi|162147251|ref|YP_001601712.1| two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785828|emb|CAP55399.1| Two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 8/189 (4%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95
           +L  S   D+  ++  L G G   L L   IRA +   P++ +S    +   +    +G 
Sbjct: 38  FLAVSENFDLIILDRMLPG-GIDGLRLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGG 96

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           DD V KP    E+LARV A+ RR +  N    R     + +    R     G    L  R
Sbjct: 97  DDYVTKPFAFSELLARVEALSRRGRSDNAPLTRLNVADLEIDLLSRSSAAAGSRIDLQPR 156

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           E R+LEYLM N G+ V +T +   ++   FD   + NV++ H+S+LR+K+        + 
Sbjct: 157 EFRLLEYLMRNAGQVVTRTMLLEGVWDYHFDP--QTNVIDVHVSRLRQKVDKPFDTPLIH 214

Query: 212 SKRFLGYSI 220
           + R  GY +
Sbjct: 215 TIRNAGYML 223


>gi|163940379|ref|YP_001645263.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862576|gb|ABY43635.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 63  FEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++
Sbjct: 123 DKNVNNHLVFKEVRIDVDAYRVYVNDVEILLTIKEFEILQLLFQNERKVLTRENIVEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   E  ++++HI  LRK    KL    + + + +GY ID
Sbjct: 183 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 220


>gi|113968585|ref|YP_732378.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114049267|ref|YP_739817.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113883269|gb|ABI37321.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890709|gb|ABI44760.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 220

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 85/150 (56%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++   +    +D   +G DD + KP H  E+LAR+ A+ RR    ++N  +   +
Sbjct: 73  MPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHFGRADNLLQHAGV 132

Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
            +  D +     +G+V  L + E R+L YLMAN  K V+K+++   IY   ++  + NV+
Sbjct: 133 SLDVDKQAVTNAEGDVIELTKIEYRLLHYLMANPTKIVSKSELSERIYE-EEQIKDSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++++LR+    +LG D ++++R  GY +
Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217


>gi|94314049|ref|YP_587258.1| OmpR/winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93357901|gb|ABF11989.1| two component transcriptional regulator, OmpR/winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R  +A + VP++ ++   S    ++  D+G DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LKRWRQAGNGVPVLILTARDSWVEKVEGIDAGADDYLTKPFRAEELLARIRALIRRSTGH 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     GP+ +        V G    L   E ++L+YLM ++G  V+KT +   IY   
Sbjct: 123 TSPVLVCGPVTLAPATGQVSVDGSPIVLTAHEYKVLDYLMHHQGVIVSKTTLTEHIYA-Q 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   + N +E  + +LR+    KLG D +++ R LGY +
Sbjct: 182 DHDRDSNTIEVFVGRLRR----KLGVDVIETVRGLGYRL 216


>gi|251780726|ref|ZP_04823646.1| two-component response regulator [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243085041|gb|EES50931.1| two-component response regulator [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 228

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+ K    ++  + IR  S +P+I ++    L   +  FD G DD + KP    E+LAR+
Sbjct: 57  LLTKNLNGMDFLKWIRKQSNIPMIVVTSNNCLFDKVLAFDIGADDYILKPFKVEELLARM 116

Query: 113 AAIYRRLKVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            AI RR  + +++++   I   S      +  ++G +  LP +E  +L +L+ N  K   
Sbjct: 117 KAIIRRCSIESDKSDIISISDLSVNLSTYEVFLKGNIINLPPKEFELLVFLLKNSNKLFT 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           + ++   I+G  D   +   ++ HI +LR+K
Sbjct: 177 RKELLDEIWG-NDNKSDCRTIDVHIKRLREK 206


>gi|283795144|ref|ZP_06344297.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1]
 gi|291076787|gb|EFE14151.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1]
          Length = 224

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)

Query: 42  AREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLDF 90
           A + +  IE F   K + VL    LP+I        +R  S+VP+I ++      + +  
Sbjct: 32  AADGLEGIEQFRANKPDLVLLDLMLPKIDGFAVCEILRKESRVPIIMLTALDDEDSQMKG 91

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEV 146
           FD+  DD + KP     ++  + A+ RR +      N       I V +D     V    
Sbjct: 92  FDALADDYITKPFSMPVVMKHIEAVLRRAEQGGAAPNTVIRYKEITVDTDSLTVLVGTGS 151

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  RE  IL+ L+ N+G+ V++ ++   ++G +D   +E +V +HI    K +R KLG
Sbjct: 152 VSLTTREFEILKLLLENQGRVVSRERLLDTVWG-YDYIGDEKIVNTHI----KNIRKKLG 206

Query: 207 FDPVDSKRFLGYSID 221
            D +++ R  GY I+
Sbjct: 207 VDYIETMRGAGYKIE 221


>gi|170744192|ref|YP_001772847.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198466|gb|ACA20413.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 221

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 4/162 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L RI  A S VP++ ++   ++   +   D G DD + KP    E  ARV A  RR +  
Sbjct: 63  LRRIRAAGSTVPVLILTARDAVADRVRGLDLGADDYLLKPFAPAEFEARVRAQIRRGQGQ 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N     G + +        + GE   L RRER +L  LMA  G+ V K ++ + ++G F
Sbjct: 123 PNPVLRCGTLALDRSTGAVTLDGEPLALRRRERAVLTVLMAKAGQVVPKERLNNEVFG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D+ V  N +E +I++LRKKL+ K     + + R LGY +D  
Sbjct: 182 DDEVAPNALELYIARLRKKLQPK--GPEIRTIRGLGYLLDAG 221


>gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|168182887|ref|ZP_02617551.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182673991|gb|EDT85952.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 228

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 18/197 (9%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY       G+  +E F S++ +  +      D+S         GE   E+ RIIR
Sbjct: 21  LEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDIS---------GE---EVCRIIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL   N+ +  
Sbjct: 69  QSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTYNSTSNL 128

Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I+G+  E 
Sbjct: 129 IFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIFGIDFEG 188

Query: 185 VEENVVESHISKLRKKL 201
            +   ++ HI  +RKK+
Sbjct: 189 YDR-TIDVHIKNIRKKI 204


>gi|153813306|ref|ZP_01965974.1| hypothetical protein RUMOBE_03723 [Ruminococcus obeum ATCC 29174]
 gi|149830596|gb|EDM85687.1| hypothetical protein RUMOBE_03723 [Ruminococcus obeum ATCC 29174]
          Length = 222

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 22/231 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58
           M   ++D   +++  I      G S  G  NS E ++ L+     D+  ++  L G+ G 
Sbjct: 1   MIYCVEDEKNIRELLIYTLETTGFSARGMANSKELKDALKEEL-PDLILLDIMLPGEDGY 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +LE  +       +P+I ++   +    +   ++G DD + KP    E +ARV A+ RR
Sbjct: 60  SILERLKASSETQNIPVIMVTAKEAEYDKVRGLEAGADDYITKPFGMMEFVARVKAVLRR 119

Query: 119 ---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                    LK  + R   G  +V+        + E   L R+E  +L+YLM N+G  + 
Sbjct: 120 CSRQEEDKELKCDDLRLSVGRHKVYW-------KEEKVELTRKEFELLQYLMENKGLVMT 172

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + QI   ++G +D   E   V+ H+  LR+KL      + +++ R +GY I
Sbjct: 173 RNQILCHVWG-YDFDGETRTVDVHVRTLRQKLGE--AGNLIETVRGVGYRI 220


>gi|57650905|ref|YP_187163.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           COL]
 gi|151222475|ref|YP_001333297.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|81693861|sp|Q5HDJ4|HSSR_STAAC RecName: Full=Heme response regulator hssR
 gi|187609572|sp|A6QJK3|HSSR_STAAE RecName: Full=Heme response regulator hssR
 gi|57285091|gb|AAW37185.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           COL]
 gi|150375275|dbj|BAF68535.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
          Length = 224

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L    R D++ ++  +   G    +L   ++    +P+I ++   +L      F SG DD
Sbjct: 40  LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156
            V KP   +E++ R+ A+ RR  +++N   T G + +     + +V  +   LP +E ++
Sbjct: 98  YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157

Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           L +++A R K++  + QI   I+G +D   +E  V+ HI +LR++L+       +++ R 
Sbjct: 158 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215

Query: 216 LGYSID 221
            GY ++
Sbjct: 216 QGYKVE 221


>gi|52425301|ref|YP_088438.1| OmpR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307353|gb|AAU37853.1| OmpR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D AL+ +G        G S++ F   +       SA  D   ++  L G  G  +
Sbjct: 8   ILLIEDDALIGNGIKVGLTKSGFSVDWFTDGKTGLQAIKSAPYDAVVLDLTLPGMDGMDI 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R        P++ ++   +L   +     G DD + KP    E++AR+ A I RR 
Sbjct: 68  LQQWR--NEKIDTPVLILTARDTLNDRVTGLQRGADDYLCKPFALAEVIARLQALIRRRY 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   E   ++   + R   +QG+  PL  RE  +LE  M N+ + ++++ I   +Y 
Sbjct: 126 GQANPIVEHSLVKFDPNSRKVSLQGKDIPLTTREYNLLELFMMNKERVLSRSFIEEKLYN 185

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +D+ V  N +E HI  LR+KL
Sbjct: 186 -WDDEVSSNALEVHIHNLRQKL 206


>gi|332827589|gb|EGK00335.1| hypothetical protein HMPREF9455_03474 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 227

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 21/221 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELP 64
           + L + GY  +  ++GV      S   +EW   L      D+  IE     + +K+    
Sbjct: 18  KGLEETGYSVVLAENGVDARSLIS--EKEWSLILLDIMLPDIDGIELLQYTRYKKI---- 71

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK-- 120
                    P++ IS     +  +   D G DD + KP   RE++A + A+ RR  LK  
Sbjct: 72  -------NTPILVISALGDAEDKIRALDCGADDYLTKPFLLRELIAHINALTRRAGLKYD 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+++  E   +++F D    E  GE   L  +E ++L+ LM N+ K +++ Q+   ++G+
Sbjct: 125 VASDVLECDDLKLFKDRHRVERGGEEIKLTMQEFKLLKLLMENKDKVLSRAQLLDTVWGV 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+ +IS LR K+        + + +  GY I+
Sbjct: 185 -NYDTNTNVVDVYISYLRNKIDTDGHVKLIKTVKGRGYMIE 224


>gi|297589562|ref|ZP_06948203.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|297578073|gb|EFH96786.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312437222|gb|ADQ76293.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 233

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L    R D++ ++  +   G    +L   ++    +P+I ++   +L      F SG DD
Sbjct: 49  LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 106

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156
            V KP   +E++ R+ A+ RR  +++N   T G + +     + +V  +   LP +E ++
Sbjct: 107 YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 166

Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           L +++A R K++  + QI   I+G +D   +E  V+ HI +LR++L+       +++ R 
Sbjct: 167 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 224

Query: 216 LGYSID 221
            GY ++
Sbjct: 225 QGYKVE 230


>gi|160878354|ref|YP_001557322.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427020|gb|ABX40583.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149
            D G +D + KP    E+ AR+ ++ RR  V  N       I + + GR   V G    +
Sbjct: 91  LDIGANDYLAKPFAFEELEARIRSLLRRSFVQENSVLVWNEISLDTVGRTVSVSGIDVTM 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            ++E  +LEY + N+ K +++ ++   ++ +  ++   N V  HI+ LRKKL+  LG+DP
Sbjct: 151 TKKELALLEYFLLNQSKVISQEELMEHVWNMEADSFS-NAVRVHIASLRKKLKIALGYDP 209

Query: 210 VDSKRFLGY 218
           + +K   GY
Sbjct: 210 IATKIGEGY 218


>gi|83718337|ref|YP_439100.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|167577524|ref|ZP_02370398.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|167615672|ref|ZP_02384307.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257142209|ref|ZP_05590471.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83652162|gb|ABC36226.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 219

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+  R +RA  S VP+I ++    + + +   ++G DD + KP    E+ ARV+A+ RR 
Sbjct: 60  LDFLRELRAGGSTVPVIILTALDQVASRIAGLNAGADDYLVKPFDLSELSARVSAVARRY 119

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N   + G + V +  R     G    L   E  +LE L+ + G  ++K+Q+   +Y
Sbjct: 120 SGNPNPLVKLGELSVDTAARSVMRGGARIDLTASEWALLETLIQHPGMLLSKSQLEERLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              DE V  N +E H+S+LRK    KLG D +++ R LGY +
Sbjct: 180 SFSDE-VGSNTIEVHVSRLRK----KLGADLIETVRGLGYRL 216


>gi|322833622|ref|YP_004213649.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321168823|gb|ADW74522.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 224

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D AL++        + G  ++     +  ++       D++ ++  L   GE  L
Sbjct: 3   ILVIEDNALLRHHLSVQLREMGHQVDAAEDAKEADYFLHEHAPDIAIVDLGL--PGEDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SLIRRWRSHQNNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVITLQPFQIDLSRRELTVNEQPIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + V+  + +LRKKL+ +   D + + R  GY  D
Sbjct: 181 -DAELRESHTVDVLMGRLRKKLQAEHPVDVITTVRGQGYRFD 221


>gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|190570997|ref|YP_001975355.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213019514|ref|ZP_03335320.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357269|emb|CAQ54693.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212994936|gb|EEB55578.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|222825037|dbj|BAH22195.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Cadra cautella]
          Length = 256

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 1/142 (0%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  +VP++ +S   +          G DD + KP H  E+LAR+ AI RR K  
Sbjct: 67  LLRLRSAKIKVPVLILSCISAANHKAKGLGYGADDYLTKPFHKSELLARIKAIVRRTKGH 126

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  + G + +  D R  EV+G+   L  +E  ++E L   +G  + K    + +Y   
Sbjct: 127 PESVIKIGNMNINFDHRIVEVKGKTVHLTNKEYSMIELLALRKGAVLTKEMFLNHLYNGL 186

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           DE  +  +V+  + KLRKKL +
Sbjct: 187 DEPSDNKIVDVFMCKLRKKLES 208


>gi|209883402|ref|YP_002287259.1| FeuP protein [Oligotropha carboxidovorans OM5]
 gi|209871598|gb|ACI91394.1| FeuP protein [Oligotropha carboxidovorans OM5]
          Length = 221

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R+  A    P++ ++     +  ++  ++G DD + KP    E+LAR+ AI RR    
Sbjct: 63  LRRLREAGVTTPIVILTARDGWREKVEGINAGADDYLTKPFQMEELLARLGAITRRAAGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++   + G + V +  R   + G    L   E R+L YL+ +RG+ +++ ++   ++   
Sbjct: 123 ASAIIKAGELEVDTRARTAMLSGHQLALSAMEYRLLAYLLMHRGRTLSQGELLEHLHD-G 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   + N +E+ I++LRK    KLGF  +++ R  GY I
Sbjct: 182 DTERDGNAIEALIARLRK----KLGFPLIETHRGRGYCI 216


>gi|163747146|ref|ZP_02154502.1| transcriptional regulator CtrA [Oceanibulbus indolifex HEL-45]
 gi|161379707|gb|EDQ04120.1| transcriptional regulator CtrA [Oceanibulbus indolifex HEL-45]
          Length = 235

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL   R+ R  +  P++ +S     +  +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHDVLRQLRLARIDT--PILILSGADDTENKIRGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +  ETG + V  D +   V      L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVIETGQVAVNLDAKTVSVNDSPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            +YG  DE  E  +++  I KLRKKL    G
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSQATG 206


>gi|300702441|ref|YP_003744041.1| response regulator, chey family [Ralstonia solanacearum CFBP2957]
 gi|299070102|emb|CBJ41389.1| putative response regulator, CheY family [Ralstonia solanacearum
           CFBP2957]
          Length = 224

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 4/147 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPI 131
           VP++ ++    +   +    +G DD + KP   RE++AR+  + RR   +N    + G +
Sbjct: 73  VPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNTPANAVELQCGDL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              +  R   + G    LP RE  +LE LM   G+ V+K  + + ++GL D+A  E  +E
Sbjct: 133 SYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFGLEDDASPE-AIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +I +LRKKL +      + + R LGY
Sbjct: 192 IYIHRLRKKLEHSAA--TIVTLRGLGY 216


>gi|49475924|ref|YP_033965.1| cell cycle transcriptional regulator ctra [Bartonella henselae str.
           Houston-1]
 gi|49238732|emb|CAF27988.1| Cell cycle transcriptional regulator ctra [Bartonella henselae str.
           Houston-1]
          Length = 233

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 15/188 (7%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           YI   G++GV L      +++  L      D+S  +        + L L +I     + P
Sbjct: 28  YITDLGEEGVDLGKL--YDYDIILLDLNLPDMSGYDVL------RTLRLAKI-----KTP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133
           ++ +S   +++  +  F  G DD + KP H  E++AR+ A+ RR K  + +   TG + V
Sbjct: 75  VLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSKGHAQSVIVTGDLIV 134

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D +  EV G    L  +E ++LE L   +G  + K    + +YG  DE  E  +++  
Sbjct: 135 NLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKIIDVF 193

Query: 194 ISKLRKKL 201
           I KLRKKL
Sbjct: 194 ICKLRKKL 201


>gi|296876734|ref|ZP_06900782.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|296432236|gb|EFH18035.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
          Length = 251

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  KV+ N    G +
Sbjct: 98  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKVNENTLNYGNL 157

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V        V G+   L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 158 KVNLSTNSTYVDGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 216

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+     + + + R +GY
Sbjct: 217 VYVSKIRKKLKGTDFVESLQTLRSVGY 243


>gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVAGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|254471949|ref|ZP_05085350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
 gi|211959151|gb|EEA94350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
          Length = 231

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA S+   +P+I ++        +    +G DD V KP    E++ARV AI+R
Sbjct: 61  IELCRRLRARSETERMPIIMLTARGEESERIRGLATGADDYVVKPFSIPELMARVRAIFR 120

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   +V +   ++G I +  +       G    L   E R+LE+LM+  G+  ++ Q+  
Sbjct: 121 RALPEVVSTMLKSGDIELDRETHRVRRTGREIHLGPTEFRLLEFLMSAPGRVYSREQLLD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK +      DP+ + R  GY+ +
Sbjct: 181 GVWG-HDVYVDERTVDVHVGRLRKAINKGRMKDPIRTVRGAGYAFN 225


>gi|91206110|ref|YP_538465.1| transcriptional activator protein CzcR [Rickettsia bellii RML369-C]
 gi|157826457|ref|YP_001495521.1| transcriptional activator protein CzcR [Rickettsia bellii OSU
           85-389]
 gi|91069654|gb|ABE05376.1| Transcriptional activator protein CzcR [Rickettsia bellii RML369-C]
 gi|157801761|gb|ABV78484.1| Transcriptional activator protein CzcR [Rickettsia bellii OSU
           85-389]
          Length = 237

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  + P++ +S        +  F SG DD + KP    E++AR+ AI RR   S
Sbjct: 63  LLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A +      + V  D R  E+ G+   L  +E  ILE L+  RG  + K    + +Y
Sbjct: 120 KGHAASVFRFDKVSVNLDTRSVEIDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              DE  E  +++  I KLRKKL +  G  D +D+    GY +
Sbjct: 180 SSLDEP-EMKIIDVFICKLRKKLSDAAGGKDYIDTVWGRGYML 221


>gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +VS    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVSPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|194291903|ref|YP_002007810.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424]
 gi|193225807|emb|CAQ71753.1| putative response regulator, OmpR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 224

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 8/154 (5%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127
           A    P++ ++   S    ++  D+G DD ++KP    E+LAR+ A+ RR   +     +
Sbjct: 69  AQVNAPVLILTARDSWTEKVEGIDAGADDYLSKPFRMEELLARIRALIRRAHGMPAPELQ 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            GP+R+        V G    L   E R+L+YLM + G  V+KT +   IY   FD   +
Sbjct: 129 CGPVRMNPRAGTVSVDGAPVVLTAHEFRVLDYLMHHPGAIVSKTALTEHIYAQDFDR--D 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N +E  + +LR+    KLG D +++ R  GY +
Sbjct: 187 SNTIEVFVGRLRR----KLGVDIIETVRGQGYRL 216


>gi|110634562|ref|YP_674770.1| two component transcriptional regulator / cell cycle
           transcriptional regulator CtrA [Mesorhizobium sp. BNC1]
 gi|110285546|gb|ABG63605.1| cell cycle transcriptional regulator CtrA [Chelativorans sp. BNC1]
          Length = 249

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 3/142 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 79  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 138

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 139 GHAQSVITTGDLIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 198

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             DE  E  +++  I KLRKKL
Sbjct: 199 GMDEP-ELKIIDVFICKLRKKL 219


>gi|302672243|ref|YP_003832203.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302396716|gb|ADL35621.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 231

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123
           IR  SQVP++ +S        +   + G DD + KP   + + A++ AI RR     ++ 
Sbjct: 73  IRKISQVPIVFLSSADDNMNIVMAMNMGADDFIAKPFDLQVLTAKIQAILRRSYGESIAV 132

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   +R+  D     V      L + E  IL+ LM  +GK V++  I   ++G  DE
Sbjct: 133 HELEVKNVRLNLDDTSASVGDNRLDLTKNEYLILKTLMEQQGKVVSRETIMERLWGA-DE 191

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V++N +  +++++RKKL      D + +KR +GY +
Sbjct: 192 FVDDNTLTVNVTRIRKKLDAAGAEDFIATKRGMGYIV 228


>gi|256823309|ref|YP_003147272.1| two component transcriptional regulator PhoB, winged helix family
           [Kangiella koreensis DSM 16069]
 gi|256796848|gb|ACV27504.1| two component transcriptional regulator PhoB, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 230

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 4/154 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           + +  VP+I ++        +   ++G DD V KP   RE+LARV A+ RR    NN +E
Sbjct: 73  QKYQDVPVIMLTARGEEDDRVQGLEAGADDYVVKPFSPRELLARVQAVLRRSGKGNNPSE 132

Query: 128 T---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               G I++ + G   ++ GE   L   E +IL + M++  +  ++ Q+  +++G     
Sbjct: 133 QISHGDIQLDTAGHRVQINGEEVHLGPTEYKILHFFMSHPERVYSRGQLLDSVWGQ-QVV 191

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VEE  V+ HI +LRK L++    + V + R  GY
Sbjct: 192 VEERTVDVHIRRLRKALQDYNVENYVQTVRGSGY 225


>gi|163847395|ref|YP_001635439.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525241|ref|YP_002569712.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163668684|gb|ABY35050.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449120|gb|ACM53386.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 29/177 (16%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR +S +P+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  EVCRQIRRNSDIPIIFLSARHQLQDRVMGLQIGGDDYLVKPFEPSELLARVEAVLRRRNA 120

Query: 119 ------LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                  ++S       P+    +F+DGR      E+ PL   E R+L YLM N G+ + 
Sbjct: 121 DVLNTSTRLSQGNITLDPVEHKVLFTDGR----VVELTPL---EFRLLYYLMKNSGRILN 173

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
            TQI S ++G +D   E N+V  +I +LR K+      DP     V + R LGY  +
Sbjct: 174 VTQILSKVWG-YDYEGESNLVAVYIRRLRTKVEE----DPDHPRHVITVRNLGYKFE 225


>gi|329894345|ref|ZP_08270215.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [gamma proteobacterium
           IMCC3088]
 gi|328923141|gb|EGG30464.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [gamma proteobacterium
           IMCC3088]
          Length = 230

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 7/130 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPL 149
           G DD + KP    E++AR+ AI+RRL           E   +R+    ++    G V  L
Sbjct: 98  GADDYLVKPFSSEELMARLEAIHRRLAPLGADFRTTLEAEDLRLDLITQEVRRAGRVIAL 157

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
             RE R+LEYLM N GK V ++ +   ++G  FD   + NV++ HIS+LR+K+     + 
Sbjct: 158 QPREYRLLEYLMRNAGKIVTRSMLLENVWGYHFDP--QTNVIDVHISRLRQKIDRDFDYP 215

Query: 209 PVDSKRFLGY 218
            V + R  GY
Sbjct: 216 LVHTVRGAGY 225


>gi|229014220|ref|ZP_04171341.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
 gi|229076416|ref|ZP_04209380.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18]
 gi|229135864|ref|ZP_04264632.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|229169751|ref|ZP_04297451.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228613790|gb|EEK70915.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228647604|gb|EEL03671.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|228706703|gb|EEL58912.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18]
 gi|228747174|gb|EEL97056.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
          Length = 216

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR    
Sbjct: 58  ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 117

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++
Sbjct: 118 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +  V+++HI  LRKKL        + + + +GY I+
Sbjct: 178 G-YEHYGDVRVIDTHIKNLRKKLE----IPYIKTVKGIGYKIE 215


>gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|22537145|ref|NP_687996.1| DNA-binding response regulator CiaR [Streptococcus agalactiae
           2603V/R]
 gi|25011074|ref|NP_735469.1| DNA-binding response regulator CiaR [Streptococcus agalactiae
           NEM316]
 gi|76787511|ref|YP_329701.1| DNA-binding response regulator CiaR [Streptococcus agalactiae A909]
 gi|76797790|ref|ZP_00780056.1| Transcriptional regulatory protein ciaR [Streptococcus agalactiae
           18RS21]
 gi|77405694|ref|ZP_00782781.1| DNA-binding response regulator CiaR [Streptococcus agalactiae H36B]
 gi|77409201|ref|ZP_00785911.1| DNA-binding response regulator CiaR [Streptococcus agalactiae COH1]
 gi|77411995|ref|ZP_00788324.1| DNA-binding response regulator CiaR [Streptococcus agalactiae
           CJB111]
 gi|77413624|ref|ZP_00789810.1| DNA-binding response regulator CiaR [Streptococcus agalactiae 515]
 gi|22534008|gb|AAM99868.1|AE014237_2 DNA-binding response regulator CiaR [Streptococcus agalactiae
           2603V/R]
 gi|23095473|emb|CAD46679.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562568|gb|ABA45152.1| DNA-binding response regulator CiaR [Streptococcus agalactiae A909]
 gi|76586866|gb|EAO63358.1| Transcriptional regulatory protein ciaR [Streptococcus agalactiae
           18RS21]
 gi|77160333|gb|EAO71458.1| DNA-binding response regulator CiaR [Streptococcus agalactiae 515]
 gi|77161951|gb|EAO72933.1| DNA-binding response regulator CiaR [Streptococcus agalactiae
           CJB111]
 gi|77172177|gb|EAO75336.1| DNA-binding response regulator CiaR [Streptococcus agalactiae COH1]
 gi|77175690|gb|EAO78472.1| DNA-binding response regulator CiaR [Streptococcus agalactiae H36B]
 gi|319745016|gb|EFV97344.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 226

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD G DD + KP +  E+  R+ A+ +R  K ++N    G IRV        V      L
Sbjct: 91  FDLGADDYLTKPFYLEELKMRIQALLKRSGKFNDNSLIYGDIRVDMSTNSTFVNQTEVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + K+QIF  I+G FD     +VVE ++SK+RKKL+  L  + 
Sbjct: 151 LGKEFDLLVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVEVYVSKVRKKLKGTLFSEN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|332524383|ref|ZP_08400598.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332107707|gb|EGJ08931.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 229

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 4/131 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            ++G DD + KP   RE++ARV A+ RR   +  RA      +   G+    +G V  L 
Sbjct: 97  LEAGADDYLPKPFSPRELVARVRALLRR--AAMPRATPQVFELDEPGQRIRYRGAVLALT 154

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDP 209
           R E  +L  L+  RG+ +++  +F  ++G   EA +   V++H+  LR KLR    G DP
Sbjct: 155 RLEYGLLRELILARGRILSREALFDRVWGTQAEAADRT-VDTHVKTLRAKLREVHAGADP 213

Query: 210 VDSKRFLGYSI 220
           + + R LGY++
Sbjct: 214 IATHRGLGYTL 224


>gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 226

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 18/171 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRELRARSNVPVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVLRRRGD 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   +  E GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 AEEPPPSVLEAGPVRMDVERHVVTVDGEAVQLPLKEFELLEVLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-------RFLGYSID 221
           +G  D   +   ++ HI +LR K+      +PV S        R LGY  +
Sbjct: 182 WG-ADYVGDTKTLDVHIKRLRAKI------EPVPSSPRYIVTVRGLGYKFE 225


>gi|153939788|ref|YP_001390660.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935684|gb|ABS41182.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
          Length = 230

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 6/139 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR  S +P+I ++   S    ++  D G DD + KP   RE+++RV AI RR   SN   
Sbjct: 67  IRKTSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRR--TSNDCD 124

Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N  ++  I  + +    E  G+   L + E ++L+Y M N  K ++K QI   ++ +  
Sbjct: 125 FNIIQSKDIVFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIENLWNIDG 184

Query: 183 EAVEENVVESHISKLRKKL 201
           E + EN V  ++ ++R+K+
Sbjct: 185 EFINENTVAVNVRRIREKI 203


>gi|54027160|ref|YP_121402.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018668|dbj|BAD60038.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 229

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 17/167 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------- 119
           +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR        
Sbjct: 67  LRTRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAGDELDG 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   E GP+R+  D     V G+   LP +E  +LEYL+ N G+ + + Q+   ++G
Sbjct: 127 NGESGVLEAGPVRMDVDRHTVMVNGKPVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
             D   +   ++ H+    K+LR+K+  DP   +     R LGY ++
Sbjct: 187 -ADYVGDTKTLDVHV----KRLRSKIEADPAKPEHLVTVRGLGYKLE 228


>gi|330721725|gb|EGG99721.1| two component transcriptional regulator2C winged helix family
           [gamma proteobacterium IMCC2047]
          Length = 219

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +  + HS +P++ ++    L   +   DSG DD + KP    E+ AR+  + RRL  +
Sbjct: 63  LKKARKKHSDLPILLLTARAELDDRITGLDSGADDYLAKPFEMAELFARLRVLERRLGTA 122

Query: 123 NNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++ +E     V  D  +  V+  G    L R+E  +L+ LM N G+   ++ +   +Y  
Sbjct: 123 HS-SEIVIHNVCLDCNNNSVKFNGTELELSRKEYMLLKSLMENAGRIQTRSTLERRLYS- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +DE V  N +E H+  LRK    KLG + + + R +GY I+
Sbjct: 181 WDEEVASNALEVHVHHLRK----KLGSNFIKTVRGVGYKIE 217


>gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 3/149 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYR 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VE ++  LRKKL        + + R +GY
Sbjct: 190 VEVYVHHLRKKLEPSGYQKDIQTVRGIGY 218


>gi|163942751|ref|YP_001647635.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864948|gb|ABY46007.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR    
Sbjct: 63  ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 122

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++
Sbjct: 123 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +  V+++HI  LRKKL        + + + +GY I+
Sbjct: 183 G-YEHYGDVRVIDTHIKNLRKKLE----IPYIKTVKGIGYKIE 220


>gi|75759474|ref|ZP_00739566.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493049|gb|EAO56173.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 232

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 80  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 139

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 140 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 198

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 199 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 227


>gi|228919426|ref|ZP_04082791.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840213|gb|EEM85489.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 228

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 76  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 136 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223


>gi|228899255|ref|ZP_04063518.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228963662|ref|ZP_04124806.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796010|gb|EEM43474.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860286|gb|EEN04683.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 76  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 136 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223


>gi|229542414|ref|ZP_04431474.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326834|gb|EEN92509.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 225

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 88/167 (52%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G + +E+ R +R    Q  +I ++   ++   +    +G DD + KP    E++AR+ A+
Sbjct: 56  GLEGIEICRKLRRQGFQGGIIMVTARDAVDDVVAGLRAGADDYIVKPFAFDELVARIDAL 115

Query: 116 YRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR LK          + +  + +  E  G++ PL R+E ++ EY M N+   + + +I 
Sbjct: 116 GRRKLKTYQETITCAYLALHLESKQAEANGKMIPLTRQEYQLCEYFMRNKNLVLPREKII 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I+GL DE + +N +++ + ++RKK+  +     +++ R LGY ++
Sbjct: 176 EHIWGL-DEDISDNALDALVKRVRKKIDREGERSLIETVRGLGYRMN 221


>gi|13472497|ref|NP_104064.1| two-component transcriptional regulator [Mesorhizobium loti
           MAFF303099]
 gi|260462502|ref|ZP_05810709.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|319781794|ref|YP_004141270.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|14023243|dbj|BAB49850.1| two-component transcriptional regulator [Mesorhizobium loti
           MAFF303099]
 gi|259031698|gb|EEW32967.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|317167682|gb|ADV11220.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 231

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 3/142 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             DE  E  +++  I KLRKKL
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKL 201


>gi|157825231|ref|YP_001492951.1| transcriptional activator protein CzcR [Rickettsia akari str.
           Hartford]
 gi|157799189|gb|ABV74443.1| Transcriptional activator protein CzcR [Rickettsia akari str.
           Hartford]
          Length = 237

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 13/165 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  + P++ +S        ++ F SG DD + KP    E++AR+ AI RR    
Sbjct: 63  LLRLRAAKIKTPILILSSLTDTDQKINGFYSGADDYLTKPFVREELIARIKAIVRR---- 118

Query: 123 NNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++     I +F       D R  EV G+   L  +E  ILE L+  RG  + K    + 
Sbjct: 119 -SKGHAASIFMFDKVSVNLDTRTVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNH 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +Y   DE  E  +++  I KLRKKL +  G  D +D+    GY +
Sbjct: 178 LYSSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221


>gi|319901144|ref|YP_004160872.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
 gi|319416175|gb|ADV43286.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
          Length = 230

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 17/218 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           R L ++ +  ++ D+G+  E  N +   +W       D+  ++  L G  G ++L+  R 
Sbjct: 18  RGLEENDHAVIWTDNGI--EARNMITQRKW-------DLILLDIMLPGIDGLELLQYTR- 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
            R     P++ IS        +   D G D+ + KP   RE++A + A+ RR K++ N  
Sbjct: 68  -RKKVNAPILVISALSETNDRIKALDYGADNYLTKPFLFRELIAHINALTRRAKLNYNED 126

Query: 126 ---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E   +R+  D    E  G+   L  +E ++L+ LM N+ + V +T++   ++G+  
Sbjct: 127 MNILECNDLRLNIDKHQIERAGKEIRLTIQEFKLLKILMENKNRVVTRTELLDNVWGINC 186

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    NVV+ +IS LR K+  +     + + +  GY I
Sbjct: 187 DNT-TNVVDVYISYLRNKIDAEHDIKLIKTIKGRGYLI 223


>gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 228

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 3/149 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 76  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYR 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 136 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VE ++  LRKKL        + + R +GY
Sbjct: 195 VEVYVHHLRKKLEPSGYQKDIQTVRGIGY 223


>gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905]
 gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905]
          Length = 247

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 30/205 (14%)

Query: 15  YIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVS--AIEAF------LIGKGEKVLELPR 65
           +IA F +  +  EG++ ++ FE       RE +S   IEAF      ++  G   +E+ R
Sbjct: 35  HIARFVELELQHEGYDVTVAFE------GREGLSLATIEAFDVLLLDVMLPGINGIEICR 88

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            +R  SQVP+I I+   ++   +   D+G DD + KP    E+LAR+  I RR   +   
Sbjct: 89  RVRTQSQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRR-ATTQEP 147

Query: 126 AETGPIRVFSDGRDPE---------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           A +     F   RD E         VQG    L + E  +L+ L+ ++ +   +  I ++
Sbjct: 148 ANSE----FLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTS 203

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G +D  +E NVV+ +I  LR KL
Sbjct: 204 VWG-YDTDIETNVVDVYIRHLRTKL 227


>gi|283471583|emb|CAQ50794.1| response regulator protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 224

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 94/186 (50%), Gaps = 6/186 (3%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L    R D++ ++  +   G    +L   ++    +P+I ++   +L      F SG DD
Sbjct: 40  LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
            V KP   +E++ R+ A+ RR  + SN+    G + +     + +V  +   LP +E ++
Sbjct: 98  YVTKPFEVKELIFRIRAVLRRYNIHSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157

Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           L +++A R K++  + QI   I+G +D   +E  V+ HI +LR++L+       +++ R 
Sbjct: 158 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215

Query: 216 LGYSID 221
            GY ++
Sbjct: 216 QGYKVE 221


>gi|239626272|ref|ZP_04669303.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520502|gb|EEQ60368.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 226

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 2/144 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR +SQVP+I ++     +  L  F  GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  EVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSNV 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS      G I +        + G    L  +E  +L Y + N+G  +++ +I + ++  
Sbjct: 125 VSTENMNVGGICIDKAAHQVTIDGREIELSYKEFELLSYFVENQGIALSREKILNNVWN- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D   +   +++H+ KLR K+  K
Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEK 207


>gi|319405236|emb|CBI78841.1| cell cycle transcriptional regulator CtrA [Bartonella sp. AR 15-3]
          Length = 233

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 15/188 (7%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           YI   G++G+ L      +++  L      D+S  +        + L L +I     + P
Sbjct: 28  YITDLGEEGIDLGKL--YDYDIILLDLNLPDMSGYDVL------RTLRLEKI-----KTP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133
           ++ +S    ++  +  F  G DD + KP H  E++AR+ A+ RR K  + +   TG + +
Sbjct: 75  VLILSGMGDIKDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSKGHAQSIITTGDLTI 134

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D +  EV G    L  +E ++LE L   +G  + K    + +YG  DE  E  +++  
Sbjct: 135 NLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKIIDVF 193

Query: 194 ISKLRKKL 201
           I KLRKKL
Sbjct: 194 ICKLRKKL 201


>gi|294509055|ref|YP_003565944.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
 gi|294352359|gb|ADE72681.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 5/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L ++IR     P++ +S   S    +  F  G DD + KP   +E++ARV A  RR + 
Sbjct: 62  DLCKVIREQIYCPILFLSAKHSEMDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREQR 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + N+   G + +     D  + G+   L  +E +ILE L  N G+  +K QI+  I
Sbjct: 122 DRVSTQNQRLLGNLTINYSQHDVLLDGKKIDLTSKEFKILELLTVNLGQIFSKEQIYEKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+ D   + N +  HI+ LR KL + +    + +   +GY ++
Sbjct: 182 WGI-DAMGDLNTIIVHINNLRAKLTSGMSTYHIKTVWGVGYKLE 224


>gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 3/137 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I ++        ++   +G DD V KP    E++AR+ A+ RR      + 
Sbjct: 69  IRKTSDIPIIFLTAKGEEWNRVNGLRNGADDYVVKPFSPGELIARMEAVLRRYTKQGQQE 128

Query: 127 ET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           E   GPIR+    R  E  G++  L  +E  +L +L  + G+  ++ Q+   ++G +D A
Sbjct: 129 ELEFGPIRMNEKSRKAETNGKIISLTVKEFDLLYFLCQHHGQVFSREQLLEKVWG-YDYA 187

Query: 185 VEENVVESHISKLRKKL 201
                V++H+  +R KL
Sbjct: 188 GSTRTVDTHVKTMRLKL 204


>gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + IR  SQ+P++ ++     +  +   + G DD + KP   RE+ AR+    RR   
Sbjct: 65  EVCQRIRQTSQIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIETTLRRIRG 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L +  +R + G + +  DGR   +  E   L RRE  +L +L+ N+G+  ++ Q++  ++
Sbjct: 125 LSLKRSRIQFGDMEIDQDGRQVYILQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLR 202
                +     V++HI  LR KL+
Sbjct: 185 ESHSTSGSLRTVDTHIKTLRLKLK 208


>gi|318058490|ref|ZP_07977213.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318075596|ref|ZP_07982928.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|333026125|ref|ZP_08454189.1| putative response regulator [Streptomyces sp. Tu6071]
 gi|332745977|gb|EGJ76418.1| putative response regulator [Streptomyces sp. Tu6071]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 5/144 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 59  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 119 PEEVTPTALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G  D   +   ++ H+ +LR K+
Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKI 201


>gi|228906317|ref|ZP_04070202.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228853340|gb|EEM98112.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 76  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 136 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223


>gi|330830551|ref|YP_004393503.1| transcriptional regulatory protein PhoP [Aeromonas veronii B565]
 gi|328805687|gb|AEB50886.1| Transcriptional regulatory protein PhoP [Aeromonas veronii B565]
          Length = 229

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 3/146 (2%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132
           P+I ++   + Q  ++  ++G DD + KP    E+LAR+ A+ RR     + + + G   
Sbjct: 79  PIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSAGFISPKVKAGDYE 138

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    ++  + GEV  L   E  ILEYLM N  + V+K Q+   +YG  D   + N +E 
Sbjct: 139 LDLSRKELTIAGEVAVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG--DGEGDPNTIEV 196

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218
            +S+LRKKL  +    P+ + R  GY
Sbjct: 197 MVSRLRKKLDPEGTIQPISTIRRQGY 222


>gi|310779288|ref|YP_003967621.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309748611|gb|ADO83273.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 217

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 76/139 (54%), Gaps = 2/139 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++        +  F+   D+ + KP + R ++AR+ AI+RR    
Sbjct: 63  VCREIRRESMVPVIMLTARSEENDQIFGFELEADEYITKPFNPRLLVARIKAIFRRAG-K 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            ++   G I +    R  E++GE   L  +E  +L Y + NRG  +++ +I ++++G +D
Sbjct: 122 PDKISRGDIEIDEGSRKVEIKGEAVELTSKEFEMLLYFVQNRGIALSREKILNSVWG-WD 180

Query: 183 EAVEENVVESHISKLRKKL 201
              +   V++H+ +LRKK+
Sbjct: 181 YFGDVRTVDTHVKRLRKKI 199


>gi|284039640|ref|YP_003389570.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283818933|gb|ADB40771.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 225

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 47  SAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105
           +AI   LI  G    EL R +RA     P++ ++     +  +  FD+G D  + KP   
Sbjct: 46  AAIITDLILPGLNGYELCRQLRAEGVSTPILMLTALDETEDRIQGFDAGADQYLAKPFQF 105

Query: 106 REILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
            E+LARV ++ +R   + ++      G I +  D +     G+   L  RE  +LE+LM 
Sbjct: 106 AELLARVRSLTKRGTQVTMTAQMLRYGGIEINLDAKTVTRDGQPIELTAREFALLEFLMR 165

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
           N+G+ ++K  I   ++ L FD     NVVE +I+ LRKK+    GFD
Sbjct: 166 NQGRVLSKPAIAEHVWDLNFDTGT--NVVEVYINYLRKKIDK--GFD 208


>gi|326201281|ref|ZP_08191153.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988849|gb|EGD49673.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 226

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 8/147 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S VP+I IS   ++   +D    G DD V KP    E++ARV+A  RR ++
Sbjct: 62  EILKEVRKFSDVPVIVISAKDTIGLKIDLLKMGADDYVTKPFDLGEVVARVSANLRRSRI 121

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S        + V  D +   V G+   L  +E  I+E L+ NR K   K  ++  I+
Sbjct: 122 KAQSEKILHYKDVAVDIDSKRIIVNGKELDLTAKEYGIMELLIKNRDKVFTKANLYETIW 181

Query: 179 GLFDEAV--EENVVESHISKLRKKLRN 203
               EA   ++N V++H+S LR KL+ 
Sbjct: 182 ---QEAYLGDDNAVKTHMSNLRSKLKT 205


>gi|254500884|ref|ZP_05113035.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222436955|gb|EEE43634.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 222

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 8/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132
           P+I ++     Q  +   D+G DD + KP    E+ AR+ A+ RR   VS +    GP++
Sbjct: 74  PVILLTARSETQDRVKGLDAGADDYLVKPFEMEELAARIRALGRRNTAVSPSLVNVGPLK 133

Query: 133 VFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            F  G      G+V   +PRRE  +L  L+   G+ ++K  +   +YG   E  +E V+E
Sbjct: 134 -FDAGSMQLFDGDVALEVPRRELSLLSALIQANGRTLSKASLLDQLYGAGSE-TDEKVIE 191

Query: 192 SHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            ++S+LRK+L +   FD  +   R +GYS++
Sbjct: 192 VYVSRLRKRLSS---FDINIQVHRGIGYSLN 219


>gi|170023956|ref|YP_001720461.1| DNA-binding transcriptional regulator PhoP [Yersinia
           pseudotuberculosis YPIII]
 gi|1617255|emb|CAA47148.1| phoP [Yersinia pseudotuberculosis]
 gi|49617497|gb|AAT67459.1| nonfunctional two-component system response regulator [Yersinia
           pseudotuberculosis]
 gi|169750490|gb|ACA68008.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIEPLIRNAGKVVSKDTLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRGQGYRFDVN 223


>gi|19749312|gb|AAL98682.1| Y4xI [Sinorhizobium fredii]
 gi|27965728|gb|AAO25539.1| Y4xi [Sinorhizobium fredii]
          Length = 226

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%)

Query: 19  FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHS-QVPLI 76
            GD G +++   +LE       SA  ++  +E  L  G G   L+  R +R+    VP +
Sbjct: 18  LGDGGFAVDVVGTLEQASSAFFSASYEILLLELVLPDGDG---LDWLRQLRSDGYSVPAV 74

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFS 135
            +S    L+  +  F+SG DD + KP+   E++AR+ A+ RR  +++    E G +    
Sbjct: 75  IMSRLDDLEKRISVFNSGADDFLRKPVSTDELIARMRALLRRSTQITCPIIEFGNLHFDP 134

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
            GR   V G    + RRE  ILE+L+   G+ V + ++   +Y  F++ V  N +E+ I 
Sbjct: 135 IGRQVSVDGHPLMIARRELCILEHLLNRAGRIVPRARLEDQLYS-FNDEVSGNALEAGIY 193

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +LR  L        + + R +GY ++  
Sbjct: 194 RLRGYLSRSGATLRIRTVRGIGYVLELT 221


>gi|331701554|ref|YP_004398513.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128897|gb|AEB73450.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 228

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 11/185 (5%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+++   L     LQ++  E+   I   L+      +E+ R +R     P+I ++   S
Sbjct: 24  EGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGMEVARRLREKKNTPIIMMTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-------IRVFSD 136
           +   +  FD G DD + KP    E+LAR+ A+ RR+++ N++ +          + +  +
Sbjct: 84  VIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQIENDQQKNNKKSVTFKDLTIEKE 143

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R      EV  L +RE  +L  LM N    +A+  + + ++G +D  VE NVV+ +I  
Sbjct: 144 SRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLLTKVWG-YDSEVETNVVDVYIRY 202

Query: 197 LRKKL 201
           LR K+
Sbjct: 203 LRNKI 207


>gi|83954575|ref|ZP_00963286.1| two component response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83840859|gb|EAP80030.1| two component response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 8/164 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R     P+I ++        +   D+G DD + KP    E+ AR+ A+ RR  + 
Sbjct: 63  LSRLRRRGDGTPVILLTARAETSERVAGLDAGADDYLTKPFEMDELEARLRAMARRKNLE 122

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              R   GP+ VF D  + ++  +  PL  PR+E   LE L+  RG+ V+K+Q+ + +YG
Sbjct: 123 FAARDTLGPL-VF-DRTNRQLLKDEAPLAFPRKELATLECLLERRGRIVSKSQLITHVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
               A E++ +E H+S+LRK+L    G   + + R LGY ++ +
Sbjct: 181 -TGAAQEDSAIEPHVSRLRKRL-EPFGI-RIKAARGLGYMLEVD 221


>gi|218674674|ref|ZP_03524343.1| two-component response regulator protein [Rhizobium etli GR56]
          Length = 222

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 8/143 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ ++ +++P+I ++   SL   +   DSG DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LKRLRQSGNKLPIIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRR---G 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +RA +    G +R     R   V+GE   L  RE  +LE L+   G  V+K  +  +++
Sbjct: 120 QDRASSEITVGNLRFSGGTRQFFVEGEPLQLTPREYAVLEQLVMKLGNTVSKAALSESVF 179

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G FD+  + + +E ++ +LRKKL
Sbjct: 180 G-FDDEADPSAIEIYVHRLRKKL 201


>gi|218895625|ref|YP_002444036.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218544951|gb|ACK97345.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|262342066|gb|ACY54553.1| putative transcriptional regulatory protein PhoP [Pseudomonas
           syringae pv. syringae]
          Length = 194

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 7/188 (3%)

Query: 35  EEWLQSSAR--EDVSAIEAFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFF 91
           EE L   A+   D++ I+  L G G   L+L R +R   +  P++ ++   + Q  ++  
Sbjct: 3   EEALYQVAQFNHDLAVIDLGLPGIGG--LDLIRQLRTLGKAFPILILTARGNWQDKVEGL 60

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            +G DD V KP    E+ AR+ A+ RR      +    GP+ +  + +   +  +   L 
Sbjct: 61  AAGADDYVVKPFQFEELEARLNALLRRSSGFIQSTITAGPLLLDLNRKHAALAEQPLALT 120

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
             E RILEYLM +  + V K ++   +Y   DE  + NV+E  + +LR+KL + + F P+
Sbjct: 121 AYEYRILEYLMLHHQQVVPKERLMEQLYPDDDER-DPNVIEVLVGRLRRKLDSSVAFKPI 179

Query: 211 DSKRFLGY 218
           ++ R +GY
Sbjct: 180 ETVRGMGY 187


>gi|120608754|ref|YP_968432.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120587218|gb|ABM30658.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 237

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 48  AIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106
           A  A  +G G  VL   R  RA   + P++ ++     +  +   D+G DD + KP    
Sbjct: 58  AAHASPVGSGLAVL---RAARARGDRTPVLVLTARDRTEERIAGLDAGADDYLGKPFDLA 114

Query: 107 EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           E+ AR+ A+ RR + +++R   G + +    R   + G+ F LP RE  +L  LM   G+
Sbjct: 115 EVEARLRALVRRTQGTDDRTSAGTLVLDRRVRRFTLHGQPFDLPAREFEVLWELMTPPGR 174

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            V+K  +   +   FD+ + +N +E+ IS+LRKKL+       + + R LGY ++
Sbjct: 175 VVSKRSLSDKLSD-FDDMLGDNALEAFISRLRKKLQGSGA--GIRTLRGLGYMLE 226


>gi|322387460|ref|ZP_08061070.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141989|gb|EFX37484.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 218

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+   IR  SQVP++ ++ +   +  +  F +  D  + KP     +  RV AI++R  
Sbjct: 60  LEVLSEIRKSSQVPVLMLTAFQDEEYKMSAFAALADGYLEKPFSLSLLKVRVDAIFKRYY 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +         +V  D    +V G+   +  +E  IL+YL+ N G+ + ++QI  A++ +
Sbjct: 120 DTGRIFTYRDTQVDFDSYSAKVAGQEVAVNAKELEILDYLVKNEGRALTRSQIIDAVWKM 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            DE   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 180 TDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|253730033|ref|ZP_04864198.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253734222|ref|ZP_04868387.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|297209820|ref|ZP_06926216.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300910832|ref|ZP_07128282.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304379557|ref|ZP_07362290.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|253726246|gb|EES94975.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253727917|gb|EES96646.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|296885493|gb|EFH24430.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300887812|gb|EFK83007.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304341733|gb|EFM07639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|320139067|gb|EFW30949.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142555|gb|EFW34364.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
          Length = 233

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L    R D++ ++  +   G    +L   ++    +P+I ++   +L      F SG DD
Sbjct: 49  LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 106

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156
            V KP   +E++ R+ A+ RR  +++N   T G + +     + +V  +   LP +E ++
Sbjct: 107 YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 166

Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           L +++A R K++  + QI   I+G +D   +E  V+ HI +LR++L+       +++ R 
Sbjct: 167 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 224

Query: 216 LGYSID 221
            GY ++
Sbjct: 225 QGYKVE 230


>gi|296115872|ref|ZP_06834496.1| two component response regulator KdpE [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977560|gb|EFG84314.1| two component response regulator KdpE [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 10/202 (4%)

Query: 22  DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIGISD 80
           DG +++ F +LE      ++   D   ++  L  G G  +L   R  R  S + ++  + 
Sbjct: 23  DGHAVDWFMTLEDARAAIATVDYDFMLLDLGLPDGNGRDLLRDIR--RTSSDIAILITTA 80

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGR 138
              +   +     G DD + KP    E++AR+AA+ RR      R     G I +  + R
Sbjct: 81  EDQISDRIAGLSEGADDYIVKPYDLNELVARIAAVARRYAAPRQRGHCRIGEIAIDRESR 140

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
                G V  L  RE  I+E L  N G+  ++ QI + +Y L D+ VE N VE  IS+LR
Sbjct: 141 SVSRDGRVLDLTAREWAIMELLSRNPGRIYSRQQIDTVLYAL-DQDVESNTVEVFISRLR 199

Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220
           +K+ N      + + R  GY +
Sbjct: 200 RKVGNT----TIRTIRGRGYCL 217


>gi|153814038|ref|ZP_01966706.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756]
 gi|317502379|ref|ZP_07960544.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087969|ref|ZP_08336892.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848434|gb|EDK25352.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756]
 gi|316896189|gb|EFV18295.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409280|gb|EGG88729.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 224

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKVSNNRAETGPI 131
           +P++ ++    +   ++  D+G +D + KP H +E+LAR+ AI R +   +N++ + G +
Sbjct: 73  IPILLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAITRAQTAQANSKLKMGNV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +     +       F L  +E ++LE LM N  + ++  +    I+G +D   E NVV 
Sbjct: 133 TLDRAAFELSTSKGSFRLANKEFQMLELLMCNPHQLISSERFLEKIWG-YDSEAEINVVW 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +IS LRKKL        + + R  GYS++
Sbjct: 192 VYISYLRKKLSALHADIQIKATRNAGYSLE 221


>gi|295110688|emb|CBL24641.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 222

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58
           M   ++D   +++  I      G S +G  N+ E    L+     D+  ++  L G+ G 
Sbjct: 1   MIYCVEDEKNIRELLIYTLETTGFSAKGMANAKELRIALKEEL-PDLILLDIMLPGEDGY 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +LE  ++ R    +P+I ++   +    +   ++G DD + KP    E +ARV A+ RR
Sbjct: 60  SILESLKLSRDTRGIPVIMVTAKEAEYDKVKGLEAGADDYITKPFGMMEFVARVKAVLRR 119

Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +  E  TG + +         +     L R+E  +L+YLM N+G  +++ QI   
Sbjct: 120 CSKQEDDKELRTGDLSLSVGRHKVRWKDTSVELTRKEFELLQYLMENKGLVMSRNQILCH 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D   E   V+ H+  LR+KL      + +++ R +GY I
Sbjct: 180 VWG-YDFDGETRTVDVHVRTLRQKLGE--AGNLIETVRGVGYRI 220


>gi|91976474|ref|YP_569133.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91682930|gb|ABE39232.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 224

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 8/130 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD+G DD V KP H  E+LAR+ A+ RR    + +    GP+ + +      V+G    L
Sbjct: 91  FDAGADDYVAKPFHLEEVLARIRALLRRSAGHAQSELTCGPVALDTRTGRVSVRGHPVKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + ++RK    KL  D
Sbjct: 151 TSHEYRLLAYLMHHSGRVVSRTELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLDVD 204

Query: 209 PVDSKRFLGY 218
            + + R LGY
Sbjct: 205 IIQTVRGLGY 214


>gi|229009996|ref|ZP_04167211.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229131506|ref|ZP_04260397.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229165510|ref|ZP_04293290.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617958|gb|EEK75003.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651953|gb|EEL07899.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228751278|gb|EEM01089.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 76  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 136 GIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223


>gi|119512472|ref|ZP_01631553.1| two-component system response regulator [Nodularia spumigena
           CCY9414]
 gi|119462876|gb|EAW43832.1| two-component system response regulator [Nodularia spumigena
           CCY9414]
          Length = 230

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 17/200 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L ++GY      DG +   F          +    D+  ++  L GK    LE+ + +
Sbjct: 18  RVLKREGYSVDMAYDGATGSEF---------AAGGTYDLLILDWMLPGK--TGLEICQEL 66

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R   +  P++ ++   +L   ++  D+G DD + KP   RE+LARV A+ RR    ++  
Sbjct: 67  RRQGKATPVLFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRAGSPSHET 126

Query: 127 ETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            TG + V     D E      QG +  L ++E ++L+Y M N G  +   QI   ++   
Sbjct: 127 TTGRLTVADLELDSENQVAYRQGRIIELSQKESQLLQYFMENTGHLLTHAQILQNLWQQD 186

Query: 182 DEAVEENVVESHISKLRKKL 201
            E    NV+ + I  LR+K+
Sbjct: 187 HEQPNSNVIAALIRLLRRKI 206


>gi|304310969|ref|YP_003810567.1| Probable transcriptional regulatory protein [gamma proteobacterium
           HdN1]
 gi|301796702|emb|CBL44914.1| Probable transcriptional regulatory protein [gamma proteobacterium
           HdN1]
          Length = 224

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 2/149 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132
           P++ ++   S Q  +   + G DD V KP    E++AR  A+ RR   ++ +    GPI 
Sbjct: 74  PVMVLTARSSWQDKVAGLEIGADDYVVKPFQMEEVVARANALVRRAAGITQSSIRLGPIE 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           + ++ +   +  E   L   E R+LEYLM +  + ++K  +   IY   D   + N +E 
Sbjct: 134 LDTNKKQVRLHEEPLDLTSYEYRVLEYLMMHPEELISKAVLTEHIYAQ-DFERDSNTIEV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I +LRKKL     + P+++ R +GY ++
Sbjct: 193 FIGRLRKKLDPDNQWKPIETVRGMGYRMN 221


>gi|13474480|ref|NP_106048.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14025233|dbj|BAB51834.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 224

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 2/163 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  +PR+  A +  P++ ++        +D  D G DD + KP    E+LAR+ A+ 
Sbjct: 57  GDGLSLVPRLRSAANTTPVLVLTAKGDTSDKVDGLDMGADDYLAKPFAFEELLARLRALL 116

Query: 117 RRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR     ++    G + +    R+  + GE   LPRRE  +LE LM   G+ V +  +  
Sbjct: 117 RRPAPLQSQFIRAGHLVLDVGHREAAIGGEPLSLPRRELLVLEALMRRTGRMVQREALME 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           A++GL DE ++ N +++H+S+LR+KL +      ++  R +GY
Sbjct: 177 AVFGLDDE-IQSNALDTHVSRLRRKLADADAGVTINGIRGVGY 218


>gi|322806233|emb|CBZ03801.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 221

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 19/199 (9%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85
           +L   A + + A+E F  G  + ++    LP+I        IR  S VP+I ++     +
Sbjct: 27  YLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFVVCEIIRKESSVPIIMLTALGEEE 86

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142
             +  F+  VDD + KP     ++ RV A+ RR   L+ +N+      I ++       V
Sbjct: 87  DEMKGFELKVDDYITKPFSISLLIKRVEAVLRRANGLEENNSTLTFEEITIYPSNYKTLV 146

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             +   L  +E +ILE L++N G+  ++  + + I+G +D   +  V+++HI    K LR
Sbjct: 147 NNKEIELTYKEFQILEILISNVGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201

Query: 203 NKLGFDPVDSKRFLGYSID 221
            KL  D + + R +GY I+
Sbjct: 202 QKLNIDYIKTIRGVGYKIE 220


>gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
 gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
          Length = 247

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 23/207 (11%)

Query: 10  LVKD-GYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           LV+D  +IA F +  +  EG++   + E  E L  +  +    +   ++  G   +E+ R
Sbjct: 29  LVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATTDAFDVLLLDVMLPGINGIEICR 88

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------- 118
            IR  SQVP+I I+   ++   +   D+G DD + KP    E+LAR+  I RR       
Sbjct: 89  RIRTQSQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATTQEPA 148

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L + +   +     VF       VQG    L + E  +L+ L+ ++ +   +  I 
Sbjct: 149 NSECLSLRDIEIDIAAYEVF-------VQGNKLDLTKTEYDLLKLLIEHKNRVCTREHIL 201

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
           ++++G +D  +E NVV+ +I  LR KL
Sbjct: 202 TSVWG-YDTDIETNVVDVYIRHLRSKL 227


>gi|157964137|ref|YP_001498961.1| transcriptional activator protein CzcR [Rickettsia massiliae MTU5]
 gi|157843913|gb|ABV84414.1| Transcriptional activator protein CzcR [Rickettsia massiliae MTU5]
          Length = 243

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  + P++ +S        +  F SG DD + KP    E++AR+ AI RR   S
Sbjct: 69  LLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 125

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A +      + +  D R  EV G+   L  +E  ILE L+  RG  + K    + +Y
Sbjct: 126 KGHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLY 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              DE  E  +++  I KLRKKL +  G  D +D+    GY +
Sbjct: 186 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 227


>gi|118588295|ref|ZP_01545704.1| two-component transcriptional regulator [Stappia aggregata IAM
           12614]
 gi|118439001|gb|EAV45633.1| two-component transcriptional regulator [Stappia aggregata IAM
           12614]
          Length = 243

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 3/142 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 74  EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 133

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG ++V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 134 GHAQSVIVTGDLKVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 193

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             DE  E  +++  I KLRKKL
Sbjct: 194 GMDEP-ELKIIDVFICKLRKKL 214


>gi|254503130|ref|ZP_05115281.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222439201|gb|EEE45880.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 230

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ +   + P++ +S    ++  +     G DD + KP H  E++AR+ AI 
Sbjct: 59  GYEVLRTLRVSKV--KTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +   TG ++V  D +  EV G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVIVTGDLKVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|297172289|gb|ADI23266.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [uncultured
           actinobacterium HF0770_13M05]
          Length = 224

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 9/179 (5%)

Query: 29  FNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGISDYPS 83
           F S   E  +Q  +  R D+  I+  L   G   L L + +R  +   ++P+I ++    
Sbjct: 24  FESPSAEAAMQILTERRTDLVIIDWML--PGMDGLNLTKTLRNRADTQKIPIIMLTARSD 81

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEV 142
               +  FDSGVDD + KP   RE++ARV A+ RR    + +  E+  + + +     ++
Sbjct: 82  EADAIQGFDSGVDDYITKPFSPRELIARVNALLRRSTDGAGSLIESNGMSLNTHNHTLQI 141

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            GE   L  R   +L+YLM N  + +++ Q+    +G     VEE  V+ +I +LRKKL
Sbjct: 142 NGENLYLKPRVYGLLQYLMKNPNRILSRNQLLDGAWG-RSVYVEERTVDVYIVRLRKKL 199


>gi|187935631|ref|YP_001885604.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187723784|gb|ACD25005.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 226

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 4/139 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSN 123
           +RA S VP+I IS    +   +D    G DD + KP    E++AR+    RR K   + N
Sbjct: 67  VRAFSDVPIIIISAKDMVGVKVDLLKLGADDYITKPFDIDEVIARIETNLRRYKKDTIGN 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  I + +D +   V+G+   L  +E  ILE LM N+ +  +K  ++  I+   + 
Sbjct: 127 MELTYKDIVLKADSKSVTVKGQELNLTVKEYNILELLMKNKNRVFSKANLYEFIWE-SEY 185

Query: 184 AVEENVVESHISKLRKKLR 202
             ++  +++HIS LR KL+
Sbjct: 186 LGDDKTIKTHISNLRSKLK 204


>gi|89902445|ref|YP_524916.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347182|gb|ABD71385.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 3/160 (1%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L + + +RA  + +P++ ++   S Q  +   ++G DD + KP  + E+ ARV A+ RR 
Sbjct: 60  LTVVQTLRAEGRTLPILILTARGSWQDKVQGLEAGADDYLVKPFEYPELAARVKALLRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           LK +++    G +R+   G+   +      L   E R+LEYL+  R + V K ++   +Y
Sbjct: 120 LKATSDVLTLGALRIDFSGQSARLHDVPLQLTTFEYRVLEYLVRERARVVPKQELSDYLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              DE  + NV+E  I +LR+KL       P+++ R  GY
Sbjct: 180 P-HDEDRDSNVLEVLIGRLRRKLDPDGTLLPIETLRGRGY 218


>gi|302023870|ref|ZP_07249081.1| response regulator protein [Streptococcus suis 05HAS68]
 gi|330832913|ref|YP_004401738.1| response regulator [Streptococcus suis ST3]
 gi|319758204|gb|ADV70146.1| response regulator [Streptococcus suis JS14]
 gi|329307136|gb|AEB81552.1| response regulator [Streptococcus suis ST3]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++  +   SL+     F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLITTAKESLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLTFGDV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V        V GE   L  +E  +L Y + N+   + KTQIF  I+G FD     +VVE
Sbjct: 133 TVDLSTNMTMVNGEEVELLGKEFDLLVYFLQNQNVILPKTQIFDRIWG-FDSDTTISVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+     + + + R +GY
Sbjct: 192 VYVSKIRKKLKGTTFGENLQTLRSVGY 218


>gi|255526422|ref|ZP_05393334.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186394|ref|ZP_06854797.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509866|gb|EET86194.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048841|gb|EFG88272.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +  +IR  S VP+I ++     Q  +  FD   DD ++KP   + +L RV A+ RR   S
Sbjct: 63  VCEMIRKESHVPIIILTALDDDQNQIKGFDLMADDYISKPFSPQILLKRVEAVLRRFNES 122

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                N       I++  +     V  +   L  +E  +L  L+ N+G  + +  I + +
Sbjct: 123 FANLDNTVVAYKDIKLDKNAAKAFVASKELELTAKEFELLNMLIENKGIVLTREVILNKL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   +E VV++HI    K LR KLG D + + R +GY ++ N
Sbjct: 183 WG-YDFYGDERVVDTHI----KNLRRKLGVDYIQTIRKVGYKLEGN 223


>gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
 gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
          Length = 238

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 25/194 (12%)

Query: 27  EGFNSLEFE---EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF++L+ E   + L+   RE V A+   L+  G   LE+ + IR        G  + P 
Sbjct: 25  EGFSTLQAETGEQALKLLGRERVDAVILDLMLPGIDGLEVLKNIRVTP-----GTKNLPV 79

Query: 84  LQTTL--DFFDS------GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAE 127
           L  T   + FD       G DD + KP   RE++ARV A+ RR         K  N   +
Sbjct: 80  LMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVLRRAEAPGEPGAKKDNRFLK 139

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GPI +    R  + +GE+  L  +E  +L     N GK + + +I + I+G +D   E 
Sbjct: 140 IGPIEIDEIKRTVKRRGELLELTLKEFDLLRLFAQNPGKVITRDEILTKIWG-YDYTGET 198

Query: 188 NVVESHISKLRKKL 201
             V+ HI +LRKK+
Sbjct: 199 RTVDVHIRQLRKKI 212


>gi|190572473|ref|YP_001970318.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190010395|emb|CAQ44003.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 221

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 27/192 (14%)

Query: 35  EEWLQSSAREDVSAIEAFLIG----KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF 90
           +E LQ +A ED+  +    IG    +G +VLE    +R  SQVP+I ++        +  
Sbjct: 30  QEGLQLAASEDMDLV-ILDIGLPDMEGHEVLEQ---LRQWSQVPVIMLTVRAGEAEKVRA 85

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEV 142
            D+G +D V KP   +E++ARV A+ R   V ++    G   VF DG        R+  +
Sbjct: 86  LDTGANDYVTKPFGTQELMARVRALLRTRSVPSD----GTPPVFDDGHLHVDLVRREVAL 141

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK-LRKKL 201
            GE   L R+E  +L  L+ N G+ V + QI   I+G   +       ++H  + L  KL
Sbjct: 142 DGEPVALTRKEYALLSLLLRNAGRVVTQPQILQEIWGPTHQH------DTHYLRILVGKL 195

Query: 202 RNKLGFDPVDSK 213
           R+KLG   +DS+
Sbjct: 196 RHKLGDSALDSR 207


>gi|229154275|ref|ZP_04282395.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228629099|gb|EEK85806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 229

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 77  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 137 GIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 195

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224


>gi|223985682|ref|ZP_03635730.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM
           12042]
 gi|223962373|gb|EEF66837.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM
           12042]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 4/138 (2%)

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQ 143
           +  L+ F++GVDD + KP   RE+LAR+ A  +R+ K S    E G + +    R+  V 
Sbjct: 86  EDILEAFEAGVDDYITKPFSPRELLARIQAHVKRIVKTSRRVLEMGGLTMDLGSREVSVN 145

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           G+   L ++E  +LEYL+ N    +++  I + I+  FD   +  +V+ HI KLR KL+ 
Sbjct: 146 GQPVSLTKKEFELLEYLLRNPQIVLSRDNILNEIWD-FDYDGDTRIVDVHIFKLRNKLQG 204

Query: 204 KLGFDPVDSKRFLGYSID 221
             G   + S R +GY ++
Sbjct: 205 S-GV-KIASLRGIGYKLE 220


>gi|167624938|ref|YP_001675232.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354960|gb|ABZ77573.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 229

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 12/153 (7%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129
           P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR   S  +A      G
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAGKASPIITNG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  + +   +    GE   L   E ++ EYLM + G+  +KT +   IY   D  ++ NV
Sbjct: 131 PFSLNTSSLEITKSGETITLSGSEYKLFEYLMLHIGEVKSKTVLTEHIYDQ-DFDLDSNV 189

Query: 190 VESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
           +E  I +LRKKL   N+LG   +++ R  GY +
Sbjct: 190 IEVFIRRLRKKLDPDNQLGL--IETLRGQGYRL 220


>gi|150017333|ref|YP_001309587.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903798|gb|ABR34631.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 15/214 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L+K+GY      DG+  E  N L+         +E +  I + ++       EL + IR
Sbjct: 20  VLLKNGYKTTGAKDGI--EALNVLD---------KEYIDLIISDIMMPNMDGFELIKSIR 68

Query: 69  -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
            A   +P++ I+     Q     F  G+DD + KPI   E++ RV A+ RR ++ + R +
Sbjct: 69  DAQFNLPILMITAKERFQDKQRGFLLGIDDYMVKPIDVNEMVLRVGALLRRAQIISERKQ 128

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + G   +  D       GE   LP++E  IL  L++   +   + ++    +GL D   +
Sbjct: 129 SVGDTMLEYDSLSVYQNGEATVLPQKEFYILYKLISYPNRIFTRQELMDEFWGL-DSETD 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V+ HI++LR + +N + FD + + R LGY +
Sbjct: 188 IRTVDVHINRLRDRFKNNIDFDIL-TVRGLGYKV 220


>gi|296446454|ref|ZP_06888398.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296256089|gb|EFH03172.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 247

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +RA      +P+I ++        +     G DD V KP    E++ARV A+ R
Sbjct: 77  LEICRRLRARDDTRTMPVIMLTARGDENERVRGLSVGADDYVVKPFSTPELMARVHALLR 136

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +      R   G I +  + R  +  G    L   E R+LEYLM   G+  ++ Q+  
Sbjct: 137 RARPERVATRLVAGDIDLDRETRRVKRAGREIHLGPTEFRLLEYLMEKPGRVFSRAQLLD 196

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +++GL  E ++E  V+ H+ +LRK +      DP+ + R  GYS D
Sbjct: 197 SVWGLSAE-IDERTVDVHVGRLRKAIIRGREKDPIRTVRGTGYSFD 241


>gi|291549314|emb|CBL25576.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 217

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 75/143 (52%), Gaps = 1/143 (0%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L + ++ + ++P I ++     +  L  FD+G DD V KP   + +L R+  + +R K
Sbjct: 59  INLYQELQKNGRIPAIFLTAKDDEKDMLKAFDTGADDYVVKPFSIKVLLKRIEVVLKR-K 117

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N    G + ++SD +   V      L  +E ++LEY + N+ + + K  I   I+G+
Sbjct: 118 SNENIFMCGQVMLYSDRKQVFVGETEISLTLKEYQLLEYFIMNQNQVLTKEMIMENIWGI 177

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
             E ++ N +   IS+L+KKL +
Sbjct: 178 DSEFIDPNTISVMISRLKKKLND 200


>gi|229099488|ref|ZP_04230416.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|229105646|ref|ZP_04236279.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|229118506|ref|ZP_04247860.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228665076|gb|EEL20564.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228677782|gb|EEL32026.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228683784|gb|EEL37734.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 216

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR    
Sbjct: 58  ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 117

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++
Sbjct: 118 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +  V+++HI  LRKKL        + + + +GY I+
Sbjct: 178 G-YEHFGDVRVIDTHIKNLRKKLE----IPYIKTVKGIGYKIE 215


>gi|209809156|ref|YP_002264694.1| putative two-component response regulator [Aliivibrio salmonicida
           LFI1238]
 gi|208010718|emb|CAQ81108.1| putative two-component response regulator [Aliivibrio salmonicida
           LFI1238]
          Length = 228

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 73/133 (54%), Gaps = 3/133 (2%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           SG DD + KP    E+ AR+  + RR  +K S++       R+    ++ E +G +  L 
Sbjct: 93  SGADDYLVKPFSFDELHARILTVGRRGIVKNSDDDVNLAGFRLDLAKKEFEFEGTLVELT 152

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           + E +I+E L  ++ + +    I + + G FD ++ +N +ESH+S +RKK++   G  P+
Sbjct: 153 KNEYKIIECLFLSKNQVMTTENISNYVVGSFD-SLSKNTIESHLSSVRKKVKLLGGEVPI 211

Query: 211 DSKRFLGYSIDWN 223
            +KR  GY +D N
Sbjct: 212 KNKRGFGYYLDRN 224


>gi|163746910|ref|ZP_02154267.1| two component response regulator [Oceanibulbus indolifex HEL-45]
 gi|161380024|gb|EDQ04436.1| two component response regulator [Oceanibulbus indolifex HEL-45]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R     P+I ++        +   D+G DD + KP    E+ AR+ A+ RR  + 
Sbjct: 63  LARLRRRGDGTPVILLTARAETSERVAGLDAGADDYLTKPFEMDELEARLRAMARRKNLE 122

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R   GP+      R      +    PR+E   LE L+  RG+ V+K+Q+ + +YG  
Sbjct: 123 FAARDALGPLIFDRTNRQLLKDEQPLAFPRKELATLECLLERRGRIVSKSQLITHVYGTG 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            E  E++ +E H+S+LRK+L    G   + + R LGY ++ +
Sbjct: 183 AEQ-EDSAIEPHVSRLRKRL-EPFGIR-IKAARGLGYMLEVD 221


>gi|86358186|ref|YP_470078.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86282288|gb|ABC91351.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE +  +P + R     P+I ++     +  ++  D G DD + KP    E++AR+ A+ 
Sbjct: 57  GEGLRFIPELRRTGRDTPIIVLTALNEPKQRVEGLDLGADDYLGKPFLVEELMARLRAVL 116

Query: 117 RR------LKVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR      LK++  R    P+ +  + G  P        LPRRE  +L  L   + K V 
Sbjct: 117 RRQPNLSELKITAGRMVIDPLHLSVTVGDTP------LDLPRRELLVLAALAKRKEKTVL 170

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ + +A+Y  ++E ++ N +++HIS+LRK+L +      + + R +GY
Sbjct: 171 RSTLEAAVYN-YEEKIQSNALDAHISRLRKRLTDAGAEVSIHNIRGVGY 218


>gi|163938495|ref|YP_001643379.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860692|gb|ABY41751.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 GIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|300774982|ref|ZP_07084845.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506797|gb|EFK37932.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 224

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 8/147 (5%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++L +IIR      P++ +S   S    +   D G DD ++KP H  E+++R+ A+ RR 
Sbjct: 60  MQLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRN 119

Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           K+S  + +     G I + +D        +       E ++  +LM N+ K +++TQI  
Sbjct: 120 KLSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILH 179

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKL 201
            ++G+ FD     NVV+ +IS +R K+
Sbjct: 180 NVWGIDFDNTT--NVVDVYISYIRNKI 204


>gi|225016621|ref|ZP_03705813.1| hypothetical protein CLOSTMETH_00528 [Clostridium methylpentosum
           DSM 5476]
 gi|224950585|gb|EEG31794.1| hypothetical protein CLOSTMETH_00528 [Clostridium methylpentosum
           DSM 5476]
          Length = 213

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 106/214 (49%), Gaps = 14/214 (6%)

Query: 11  VKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           +++ +  +  D G     +++G ++LE  +      RE +  I A ++       EL + 
Sbjct: 1   MRELFCTVLADGGYHAIPAVDGMDALEIMD------REYIDLIVADIMMPNMNGYELTKS 54

Query: 67  IR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +R A+  +P++ ++     +     F +G DD + KPI+  E++ RV A+ RR K+S+ +
Sbjct: 55  LREANYDLPILMVTAKDQFEDMQKAFRTGTDDYMIKPININELVLRVEALLRRAKISSEK 114

Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               G   +  D       GE   LP++E  +L  L++   K   + Q+   I+G+F E 
Sbjct: 115 KIVVGRTVLDYDALTVTRNGEESILPQKEFYLLYKLLSYPNKIFTRQQLMDEIWGMFSET 174

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +E  V +HI++LR +  +   F+ V + R LGY
Sbjct: 175 -DERTVNTHINRLRDRFSDCKDFEIV-TVRGLGY 206


>gi|222087616|ref|YP_002546153.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725064|gb|ACM28220.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 222

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 12/161 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +  ++VP+I ++   SL   +   DSG DD + KP    E+ AR+ A  RR    
Sbjct: 63  LKRLRQGGNKVPVIILTANASLDGRITGLDSGADDYLAKPFEIAELEARIRAAVRR---G 119

Query: 123 NNRA----ETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++RA      G + VF  G R   + GE   L  RE  +LE+L+   G  V KT +  ++
Sbjct: 120 HDRAAPEIAVGDL-VFDGGTRQFSLGGETLALTPREHAVLEHLVMKVGTTVTKTALSESV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G FD+  + + +E ++ ++RKKL        + + R LGY
Sbjct: 179 FG-FDDLADTSAIEIYVHRVRKKLEGS--AVQIATLRGLGY 216


>gi|117618787|ref|YP_857713.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560194|gb|ABK37142.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 229

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 37/235 (15%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60
            +L++D  ++ DG +      G +++         WLQ         + A  + K E+  
Sbjct: 3   ILLVEDDVMLGDGMVDALRSSGYTVD---------WLQQ-------GLPALSVLKSEEFA 46

Query: 61  -----LELP---------RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106
                L LP         ++ R    +P++ ++   +L   +   D+G DD + KP   +
Sbjct: 47  ALILDLNLPDIDGISLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQ 106

Query: 107 EILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           E+ AR+ A+ RR K       E G ++++ + +    +GE   L   E ++L+ L+   G
Sbjct: 107 ELNARLRALVRRSKGQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSG 166

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++K Q+  ++YG +DE  E N VE HI  LRKK  +    D + + R +GY +
Sbjct: 167 RVLSKDQLQQSLYG-WDEGAESNAVEVHIHHLRKKFYS----DLIRNIRGVGYIV 216


>gi|146281237|ref|YP_001171390.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145569442|gb|ABP78548.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
 gi|327479394|gb|AEA82704.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 221

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L++D   + D  +A     G + +        E+  ++   D+  ++  L GK G +V
Sbjct: 3   LLLVEDNVPLADELVASLSRQGYATDWLTDGRDAEYQGATEPYDLIILDLGLPGKPGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R   A    P++ ++   S    +D   +G DD + KP H  E+L R+ A+ RR  
Sbjct: 63  LHAWRA--AGVTTPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELLLRIQALLRRAH 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   + G + +    +     G+   L   E R+L Y M + G+ ++KTQ+   +Y
Sbjct: 121 GLANQPMLQAGGLELDESRQCCRKDGQDIELTAGEFRLLRYFMLHPGQLLSKTQLTEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               E  + NV+E H++    +LR KLG + ++++R  GY
Sbjct: 181 DGETER-DSNVIEVHVN----RLRGKLGRELIETRRGQGY 215


>gi|157827976|ref|YP_001494218.1| transcriptional activator protein czcR [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165932668|ref|YP_001649457.1| cell cycle transcriptional regulator [Rickettsia rickettsii str.
           Iowa]
 gi|157800457|gb|ABV75710.1| transcriptional activator protein czcR [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165907755|gb|ABY72051.1| cell cycle transcriptional regulator [Rickettsia rickettsii str.
           Iowa]
          Length = 237

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  + P++ +S        +  F SG DD + KP    E++AR+ AI RR   S
Sbjct: 63  LLRLRAAKIKTPILILSSLTDTYQKITDFSSGADDYLTKPFVREELIARIKAIVRR---S 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A +      + +  D R  EV+G+   L  +E  ILE L+  RG  + K    + +Y
Sbjct: 120 KGHAASVFRFDKVSINLDTRSVEVEGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              DE  E  +++  I KLRKKL +  G  D +D+    GY +
Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221


>gi|220932165|ref|YP_002509073.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219993475|gb|ACL70078.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 227

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 12/148 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR   Q P++ ++   + +  ++ F  G DD + KP   RE+LAR+ AI RR   
Sbjct: 63  EVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRR--- 119

Query: 122 SNNRAETGPIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           SN +AE   I V+ DGR    P      V G    L R E  IL  L+ N G+   + Q+
Sbjct: 120 SNQKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              + GL  +  +   +++HI  +RKKL
Sbjct: 180 AKKVMGLEYKGYDR-TIDAHIKNIRKKL 206


>gi|319898558|ref|YP_004158651.1| two-component system regulatory protein [Bartonella clarridgeiae
           73]
 gi|319402522|emb|CBI76065.1| two-component system regulatory protein [Bartonella clarridgeiae
           73]
          Length = 222

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 6/131 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E++AR+ A+ RR    + N    G + + +      V G++  L
Sbjct: 91  IDAGADDYVVKPFHLEEVMARLRALIRRSAGHATNTLSCGEVLLDTKTSRVFVDGQLIKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
              E R+L YLM +  K V++T++   +Y   D   + N +E  I +LRK    KLG D 
Sbjct: 151 TSYEFRLLAYLMHHCDKVVSRTELIEHLYDQ-DFNKDSNTIEVFIRRLRK----KLGVDS 205

Query: 210 VDSKRFLGYSI 220
           +++ R LGY I
Sbjct: 206 IETVRGLGYRI 216


>gi|312143607|ref|YP_003995053.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904258|gb|ADQ14699.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 225

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 16/156 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GEKV +    IR  SQ+P+I ++   S +  +D F+ G DD + KP   RE+ AR+ A+ 
Sbjct: 59  GEKVCQK---IRQSSQIPIIMLTAKSSEENKIDGFNYGTDDYITKPFSPRELKARIKAVL 115

Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR   SN  +    + G I+++ +    +   +   L   E +IL  L+ N  + +++ Q
Sbjct: 116 RRSNDSNKASIITLKDGNIKIYPEEMVVKQDNDNCDLTSTEFKILMELINNARQVLSREQ 175

Query: 173 IFSAIYGL----FDEAVEENVVESHISKLRKKLRNK 204
           + + + GL    FD       +++HI  +RKKL+ K
Sbjct: 176 LANKVMGLEFSGFDRT-----IDTHIKNIRKKLKLK 206


>gi|254719962|ref|ZP_05181773.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|265984972|ref|ZP_06097707.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306837250|ref|ZP_07470137.1| DNA-binding response regulator [Brucella sp. NF 2653]
 gi|264663564|gb|EEZ33825.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306407654|gb|EFM63846.1| DNA-binding response regulator [Brucella sp. NF 2653]
          Length = 225

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D  ++          +G  ++  + L+       SAR D+  ++  L  G+G   
Sbjct: 3   IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYVESARYDLVLLDLMLPDGQG--- 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119

Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y
Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD  VE N +E H+S+LRK    KLG   +++ R +GY +
Sbjct: 180 S-FDTEVESNTMEVHVSRLRK----KLGHAIIETVRGIGYRL 216


>gi|219848680|ref|YP_002463113.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542939|gb|ACL24677.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 226

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 21/173 (12%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S+VP+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DVCRQIRRSSEVPIIFLSARSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRNA 120

Query: 122 ----SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
               ++ R   G I         +F+DGR  E+     PL   E R+L YLM N G+ + 
Sbjct: 121 DVLNTSTRLSQGDITLDPVEHKVIFTDGRTVELT----PL---EFRLLYYLMKNAGRILN 173

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            +QI S ++G +D   E N+V  +I +LR K+  N      V + R LGY  +
Sbjct: 174 VSQILSKVWG-YDYEGESNLVAVYIRRLRTKIEENPNNPRHVITVRNLGYKFE 225


>gi|117618398|ref|YP_858477.1| two-component system, regulatory protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559805|gb|ABK36753.1| two-component system, regulatory protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 218

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 8/151 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131
            P++ ++    L   ++  ++G DD + KP    E++ARV A+ RR    +++  E G +
Sbjct: 73  TPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAAGNASSILEIGGV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190
           R+         +G    L   E R+L YLM +RGK V+++++   IY   FD   + N V
Sbjct: 133 RLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYAQDFDR--DSNTV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  I ++RKK  +    D +++ R LGY I+
Sbjct: 191 EVFIGRIRKKTHS----DLIETVRGLGYRIN 217


>gi|289167540|ref|YP_003445809.1| response regulator [Streptococcus mitis B6]
 gi|288907107|emb|CBJ21941.1| response regulator [Streptococcus mitis B6]
          Length = 218

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 105/219 (47%), Gaps = 6/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   +
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                    +V  +     + GE   +  +E  IL+YL+ N G+ + ++QI  A++   D
Sbjct: 122 GRVFSYKDTKVDFESYSASLSGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKATD 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 223

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S+VP++ I+        L  F+ G DD V KP   +E++ARV AI  R    
Sbjct: 64  LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTSGE 123

Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +   + E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++G 
Sbjct: 124 SEVEKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 183 YDFYGDLRTVDTHIKQLREKLGEKRKL--IKTVWGIGYKLD 221


>gi|218289377|ref|ZP_03493611.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240483|gb|EED07664.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 235

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 21/217 (9%)

Query: 6   DDRALVKD--GYIALFGDDGVSLEGFNSLEF----EEWLQSSAREDVSAIEAF------- 52
           D+RA++ D      L  DD  S+  F  LEF    E +   +AR+ V AI          
Sbjct: 4   DNRAVLYDPSKVRVLVVDDEPSIVKF--LEFGLRREGYAVDTARDGVEAIAKARESMPHV 61

Query: 53  ----LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
               ++  G    E+ R++++   V +I ++   ++   +     G DD V KP    E+
Sbjct: 62  CILDVMMPGPDGFEVCRMLKSMGNVAVILLTARDAIDDRVKGLVGGADDYVVKPFSFEEL 121

Query: 109 LARVAAIYR-RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           LAR+ A  R +      R E GP  +    ++   +GE   L   E  +L YL+ N G  
Sbjct: 122 LARIHARVRNQFPSLLKRQEMGPFVIDDARKEISFRGETLKLSSTEYELLRYLLQNHGLV 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           ++K QI   ++G +D   ++N+VE +IS LR+KL ++
Sbjct: 182 LSKAQILDHVWG-YDFNGQDNIVEVYISALREKLGDR 217


>gi|186471004|ref|YP_001862322.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197313|gb|ACC75276.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 220

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 94/171 (54%), Gaps = 18/171 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++L+  R  R H+  P++ ++   ++   +   ++G DD + KP    E++AR  A+ 
Sbjct: 59  GTELLDWIRKRRDHT--PVLVMTARDTVADRVSGLNAGADDYLGKPFDLTELVARCRALV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPE----VQG-EVFPLPRRERRILEYLMANRGKRVAK 170
           RR +  S +  E G + V     DPE    ++G E   L  RE  +L  L+AN+G+ +++
Sbjct: 117 RRSQGRSTDTIEYGDLLV-----DPERLTVMRGSERIALSSRECALLVELLANQGRPLSR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  ++YG ++E +E N +E HIS LRK    KLG   + + R +GY ++
Sbjct: 172 ARLQDSLYG-WNEEIESNAIEVHISNLRK----KLGAQLIRTIRGVGYVVE 217


>gi|307153326|ref|YP_003888710.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
 gi|306983554|gb|ADN15435.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 804

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP + +E+LARV A+ RR  +S+    + GP+ +         QG++  L
Sbjct: 91  LDAGADDYLVKPFNIQELLARVRALLRRGGLSSTPLLQWGPLDLNPSSCQVSYQGQLLHL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  ILE  + NR +  +++ +   ++  FDE+  EN V + I  LR+KLR   G  P
Sbjct: 151 TAKEYGILELFLRNRNRIFSQSALIEHLWS-FDESPTENAVRTQIKSLRQKLRGA-GASP 208

Query: 210 --VDSKRFLGYSID 221
             +++   LGY ++
Sbjct: 209 NLIETVYGLGYRLN 222


>gi|194364065|ref|YP_002026675.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194346869|gb|ACF49992.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 237

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 27/192 (14%)

Query: 35  EEWLQSSAREDVSAIEAFLIG----KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF 90
           +E LQ +A ED+  +    IG    +G +VLE    +R  SQVP+I ++        +  
Sbjct: 46  QEGLQLAASEDMDLV-ILDIGLPDMEGHEVLEQ---LRQWSQVPVIMLTVRAGETEKVRA 101

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEV 142
            D+G +D V KP   +E++ARV A+ R   V ++    G   VF DG        R+  +
Sbjct: 102 LDTGANDYVTKPFGTQELMARVRALLRTRSVPSD----GTPPVFDDGHLHVDLVRREVAL 157

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK-LRKKL 201
            GE   L R+E  +L  L+ N G+ V + QI   I+G   +       ++H  + L  KL
Sbjct: 158 DGEPVALTRKEYALLSLLLRNAGRVVTQPQILQEIWGPTHQH------DTHYLRILVGKL 211

Query: 202 RNKLGFDPVDSK 213
           R+KLG   +DS+
Sbjct: 212 RHKLGDSALDSR 223


>gi|323483866|ref|ZP_08089243.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323692869|ref|ZP_08107094.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
 gi|323402820|gb|EGA95141.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323503044|gb|EGB18881.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
          Length = 225

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 4/187 (2%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSG 94
           E L+    E +  I + ++  G    EL R +R +   +P++ I+     +   + F +G
Sbjct: 36  EALELLDSEYIDLIISDIMMPGMDGYELIRTLRGNGYSLPILIITAKERFEDKQEGFQAG 95

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
            DD + KPI   E++ RV A+ +R +++ + R   G   +  D     V GE   LP++E
Sbjct: 96  TDDYMVKPIDVNEMVLRVGALLKRARIATDRRIICGKTTLDYDALTVTVDGEETLLPQKE 155

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             +L  LM+   K   + Q+   I+G+ D   +E  V+ HI++LR++ R+   F  + + 
Sbjct: 156 FYLLYKLMSYPNKIFTRQQLMDEIWGM-DSTSDERTVDVHINRLRERFRDCDDF-LIMTV 213

Query: 214 RFLGYSI 220
           R LGY +
Sbjct: 214 RGLGYKV 220


>gi|154252621|ref|YP_001413445.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154156571|gb|ABS63788.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 235

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL+  R+ +  +  P++ +S    ++  +     G DD + KP H  E++AR+ A+ 
Sbjct: 59  GYEVLKSLRVGKITT--PILILSGLAGIENKVRGLGFGADDYMTKPFHKDELVARIHAVV 116

Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG + V  D +  EV+     L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSVINTGKLTVNLDTKTVEVENNRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            +YG  DE  E  +++  I KLRKKL    G D
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAASTGGD 208


>gi|296284705|ref|ZP_06862703.1| two-component response regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 225

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 10/151 (6%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR    N  +E     V
Sbjct: 74  PVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS-GNTSSELTAGDV 132

Query: 134 FSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190
             D R   V   G+   L  +E ++L YLM ++GK V++T++   IY   FD   + N +
Sbjct: 133 RLDTRSGRVTRGGDPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYDQDFDR--DSNTI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  ++++RK    KLG + + + R LGYS+D
Sbjct: 191 EVFVTRIRK----KLGAEVITTIRGLGYSLD 217


>gi|254473206|ref|ZP_05086604.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211957927|gb|EEA93129.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 229

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ +   + P++ +S    ++  +     G DD + KP H  E++AR+ AI 
Sbjct: 59  GYEVLRTLRVSKV--KTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHAQSVIVTGDLTVNLDTKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +YG  DE  E  +++  I KLRKKL
Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201


>gi|163815855|ref|ZP_02207225.1| hypothetical protein COPEUT_02034 [Coprococcus eutactus ATCC 27759]
 gi|158448665|gb|EDP25660.1| hypothetical protein COPEUT_02034 [Coprococcus eutactus ATCC 27759]
 gi|295093939|emb|CBK83030.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 222

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 1/164 (0%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G    ++ R I+  S VP++ ++    L+  L   + G D+ + KP     +LARVA + 
Sbjct: 53  GRSGFDICREIKRRSSVPVLVLTSRDQLKDELHALELGADEFLTKPCRRERLLARVANVL 112

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +R +   N  E     + +      + G    LP+ + RI E LM + G  V+K ++  A
Sbjct: 113 KRYEGRQNLIEGEGFLLDTQTYTLYIDGRSAVLPQNQGRIFETLMTSGGDVVSKEKLCEA 172

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G   E ++EN ++ ++++L+KK+        + + R +GY I
Sbjct: 173 VWGT-SEYIDENALQVNLTRLKKKMAGLDMKAKIIAVRGVGYKI 215


>gi|146318749|ref|YP_001198461.1| response regulator [Streptococcus suis 05ZYH33]
 gi|146320952|ref|YP_001200663.1| response regulator [Streptococcus suis 98HAH33]
 gi|223932354|ref|ZP_03624357.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|253751848|ref|YP_003024989.1| response regulator protein [Streptococcus suis SC84]
 gi|253753671|ref|YP_003026812.1| response regulator protein [Streptococcus suis P1/7]
 gi|253755449|ref|YP_003028589.1| response regulator protein [Streptococcus suis BM407]
 gi|145689555|gb|ABP90061.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           05ZYH33]
 gi|145691758|gb|ABP92263.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           98HAH33]
 gi|223899035|gb|EEF65393.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|251816137|emb|CAZ51761.1| response regulator protein [Streptococcus suis SC84]
 gi|251817913|emb|CAZ55689.1| response regulator protein [Streptococcus suis BM407]
 gi|251819917|emb|CAR45990.1| response regulator protein [Streptococcus suis P1/7]
          Length = 224

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G + V        V GE   L
Sbjct: 92  FELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLTFGDVTVDLSTNMTMVNGEEVEL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  I+G FD     +VVE ++SK+RKKL+     + 
Sbjct: 152 LGKEFDLLVYFLQNQNVILPKTQIFDRIWG-FDSDTTISVVEVYVSKIRKKLKGTTFGEN 210

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 211 LQTLRSVGY 219


>gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 228

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 11/215 (5%)

Query: 16  IALFGDDGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +A F +  +  EG+ +   L+    LQ++  +D   I   L+      +E+ R +R    
Sbjct: 13  LAKFVEMELKHEGYETDVELDGRAGLQAALNQDFDLILLDLMLPELNGIEVARRVRELKN 72

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAETG 129
            P+I ++   S+   +  FD G DD + KP    E+LARV A+ RR+ +   SN   +T 
Sbjct: 73  TPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALLRRINIEDSSNKEHQTT 132

Query: 130 ----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                + +  + R      EV  L +RE  +L  LM N    +++ ++ S ++G +D  V
Sbjct: 133 VQYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELLSKVWG-YDSKV 191

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E NVV+ +I  LR K+        + + R  GY I
Sbjct: 192 ETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|260589879|ref|ZP_05855792.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|260539686|gb|EEX20255.1| regulatory protein VanR [Blautia hansenii DSM 20583]
          Length = 243

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 5/193 (2%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89
           N +E  E L S   + +          GEK+L    + + ++ +P+I IS     +  ++
Sbjct: 52  NGIEAIEALSSKKYDLMLLDLMLPDLPGEKILF--HLKKHNNSIPVIVISAKNQPEIRIN 109

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFP 148
              SG DD + KP +H E+LAR+ ++ RR   S         IR+  D     V      
Sbjct: 110 LLRSGADDYITKPFYHEEVLARIESVLRRCSESPQTEYSFKDIRINVDDHKVLVNNTELS 169

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L   E  +L+ L+ +  +   K  ++  I+G  D   ++N +  HISKLRKKL +     
Sbjct: 170 LTTTEYNLLQLLIKHPKQTFTKESLYQLIWGK-DYISDDNTLNVHISKLRKKLEHIGNQA 228

Query: 209 P-VDSKRFLGYSI 220
           P +D+   +GY +
Sbjct: 229 PYIDTVWGIGYKL 241


>gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 226

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces venezuelae ATCC 10712]
          Length = 226

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVAGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 226

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRVRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|15673657|ref|NP_267831.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281492256|ref|YP_003354236.1| Two-component system response regulator [Lactococcus lactis subsp.
           lactis KF147]
 gi|12724689|gb|AAK05773.1|AE006398_4 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281375927|gb|ADA65421.1| Two-component system response regulator [Lactococcus lactis subsp.
           lactis KF147]
 gi|326407140|gb|ADZ64211.1| Two-component system response regulator [Lactococcus lactis subsp.
           lactis CV56]
          Length = 225

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 3/148 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET-GP 130
            P++ ++   SL   +  FD G DD + KP +  E+ AR+ A+ +R  K+ ++   T G 
Sbjct: 76  TPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRTGKLEDSNGLTYGN 135

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           IR+    +   V  +   L  +E  ++ YLM N+   + K QIF  I+G +D      VV
Sbjct: 136 IRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRIWG-YDSDTTVTVV 194

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E ++SK+RKKL++    + + + R +GY
Sbjct: 195 EVYMSKIRKKLKDTEFVNNLSTLRNVGY 222


>gi|327402249|ref|YP_004343087.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327317757|gb|AEA42249.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 225

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 2/127 (1%)

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSD 136
           +S   SL   L+  + G DD + KP H  E++AR+ +I RR K   N   E G ++V   
Sbjct: 78  LSARNSLDDKLEGLNLGADDYLTKPFHFSELIARIRSIVRRKKFDGNALFEIGNLQVDIT 137

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHIS 195
            +   + GE   L R+E  I  YL++N+G+ V+KT +   ++G   DE+     + S I 
Sbjct: 138 NQALSMNGEPIVLNRKEFAIFMYLVSNKGRLVSKTALAEHVWGDNIDESDNFEFIYSQIK 197

Query: 196 KLRKKLR 202
            LRKK+ 
Sbjct: 198 NLRKKMN 204


>gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 226

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGTKIDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKVEPDPG 209


>gi|241113399|ref|YP_002973234.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240861607|gb|ACS59273.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 222

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ ++ S++P+I ++   SL   +   DSG DD + KP    E+ AR+ A+ RR +  
Sbjct: 63  LKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQDR 122

Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   T    +FS G R   V GE   L  RE  +LE L+   G  V+K  +  +++G F
Sbjct: 123 ASSEITVGNLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKHGITVSKAALSESVFG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D+  + + +E ++ +LRKKL +      + + R LGY
Sbjct: 182 DDEADASAIEIYVHRLRKKLESS--SVQIATLRGLGY 216


>gi|269926598|ref|YP_003323221.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790258|gb|ACZ42399.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 8/147 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R  S+VP+I IS Y  ++  ++  +SG DD V KP H  E+ ARV    RR +
Sbjct: 63  LEVCKRLREWSKVPIIVISAYDDVEYVVEALNSGADDYVRKPFHQEELFARVKTQLRRAE 122

Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              ++        GP+ +    R   +  E   L   E  ILE L+ N GK +    + +
Sbjct: 123 ERPSQQVQSVFRCGPLTINFSRRQVTLNDEEVKLTPTEYSILEQLVQNAGKVMTHQMLLN 182

Query: 176 AIYGLFDEAVEEN-VVESHISKLRKKL 201
            ++G   E  EEN  +  +I +LR+KL
Sbjct: 183 RVWG--PEYTEENEYLRVYIGRLRRKL 207


>gi|86361041|ref|YP_472928.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86285143|gb|ABC94201.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 222

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 8/143 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ ++ +++P+I ++   SL   +   DSG DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LKRLRQSGNKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRR---G 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +RA +    G +R     R   V+GE   L  RE  +LE L+   G  V+K  +  +++
Sbjct: 120 QDRASSEITVGNLRFSGGTRQFFVEGEPLQLTPREYAVLEQLVMKLGTTVSKAALSESVF 179

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G FD+  + + +E ++ +LRKKL
Sbjct: 180 G-FDDEADPSAIEIYVHRLRKKL 201


>gi|21222625|ref|NP_628404.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|7242751|emb|CAB77324.1| putative response regulator [Streptomyces coelicolor A3(2)]
 gi|298285547|emb|CAD67559.2| regulatory protein [Streptomyces lividans]
          Length = 223

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 59  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 119 PEEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 206


>gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation
           [Oceanobacillus iheyensis HTE831]
          Length = 231

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 75/136 (55%), Gaps = 6/136 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146
            + G DD + KP   +E++ARV AI RR ++SNN      + G + ++ +  + E+   +
Sbjct: 93  LEMGADDYLTKPFSPKEVIARVKAILRRSQLSNNHGFHVLKIGELSIYPERYEAEMSNNI 152

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKL 205
               R+E  +L +L  ++GK +++ Q+ S+++  +D   +  +V+ HIS LR K+  N  
Sbjct: 153 ITFTRKEFELLYHLAKHKGKVISRDQLLSSVWD-YDFIGDTRIVDVHISHLRDKIEPNSK 211

Query: 206 GFDPVDSKRFLGYSID 221
               + + R LGY ++
Sbjct: 212 KPVYIKTVRGLGYKME 227


>gi|254712082|ref|ZP_05173893.1| DNA-binding response regulator [Brucella ceti M644/93/1]
 gi|254715152|ref|ZP_05176963.1| DNA-binding response regulator [Brucella ceti M13/05/1]
 gi|261216863|ref|ZP_05931144.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261319730|ref|ZP_05958927.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|260921952|gb|EEX88520.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292420|gb|EEX95916.1| two component transcriptional regulator [Brucella ceti M644/93/1]
          Length = 225

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D  ++          +G  ++  + L+       SAR D+  ++  L  G+G   
Sbjct: 3   IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPDGQG--- 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119

Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q    +Y
Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQFEEHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD  VE N +E H+S+LRK    KLG   +++ R +GY +
Sbjct: 180 S-FDTEVESNTMEVHVSRLRK----KLGHAIIETVRGIGYRL 216


>gi|295109722|emb|CBL23675.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 227

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR +S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  EVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTGQ 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N+    G I +        V G    L  +E  +L Y + N+G  +++ +I ++++ 
Sbjct: 125 DAGNDVLSAGGIVIDKSAHQATVDGRQMELSFKEFELLTYFLENQGIALSREKILNSVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR K+ +K
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKMGDK 208


>gi|257438363|ref|ZP_05614118.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
 gi|257199194|gb|EEU97478.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
          Length = 232

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D  L+ D    L    G  +    S      L      D+  ++  L G  GE V
Sbjct: 9   LLIIEDDVLLNDMTKRLLTQHGYCVTSAYSGSEALLLIEKGTFDLILLDLMLPGIPGETV 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE    +++   +P+IG+S    + + ++   +G DD + KP  ++E+L R  A+ RR +
Sbjct: 69  LEK---MKSTMDIPIIGVSAKTDIDSKVNLIRNGADDYITKPFDNQELLVRTEAVLRRFQ 125

Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S     +  +R     + ++  + +++     L R E  IL+ LM++  K   K  IF 
Sbjct: 126 KSTTPNNSKILRFKDLSLDTEAMEAKIRNTPITLTRYEYLILQLLMSSPSKVFTKNNIFE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKK 200
           +++   +   ++N +  HI  LRKK
Sbjct: 186 SVWN-ENFVGDDNAINVHIGNLRKK 209


>gi|255524686|ref|ZP_05391638.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185644|ref|ZP_06854053.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511580|gb|EET87868.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049772|gb|EFG89197.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 230

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 87/164 (53%), Gaps = 9/164 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S+VP+I IS   S    +   +SG DD + KP ++  ++A++ +  RR      
Sbjct: 66  RKIRQQSKVPIIFISARDSGMDQVMALESGADDYITKPFYYDLVIAKIKSHLRRAFGDYA 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K+     E   +R + +  + E + +   + +RE  ++EYLM    K V++  +   I+
Sbjct: 126 PKIEERIVEVDGLRFYPERLELEFKEQRLIITKREGILIEYLMKKYPKVVSRDFLLEKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
               E VEEN +  +IS++RK+L+N LG D  +++ R  GY ++
Sbjct: 186 DDI-EFVEENTLSVNISRIRKRLQN-LGIDGGIETIRGAGYRLN 227


>gi|163849055|ref|YP_001637099.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222527023|ref|YP_002571494.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163670344|gb|ABY36710.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450902|gb|ACM55168.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 227

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 12/138 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPI----RVFSDGRDPEVQ 143
           F+SG DD + KP    E+LARV A+ RR      +N+    G I    R ++  R  E +
Sbjct: 91  FESGADDYLVKPFAFEELLARVRALGRRFHPNLSANDELRVGTIVLDLRNYT-ARRGERR 149

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ P    E R+LEYLM N G+ + + QI   ++  F+  V+  +V+ +IS LR+KL  
Sbjct: 150 LDLTPT---EWRLLEYLMRNVGQTLTRQQILDYVWS-FEHDVQPQMVDVYISYLRRKLNA 205

Query: 204 KLGFDPVDSKRFLGYSID 221
               DP+++ R +GY ++
Sbjct: 206 SGETDPINTIRGIGYRLE 223


>gi|317402058|gb|EFV82653.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 261

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 8/151 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETG 129
           S+ P++ ++    ++  +   D+G DD + KP   RE+ AR  A+ RR  V +      G
Sbjct: 100 SKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLRRPSVQAAGVLRFG 159

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + + S  R   + G+   LP+RE  +LE L+    + V+K +I + ++  FD+    N 
Sbjct: 160 DLVIDSAARQVSLAGQRIDLPKREYSLLEILLGGMNRAVSKAEIANKLFA-FDDDAAPNA 218

Query: 190 VESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
           +E +I++LR+KL       P  ++++R  GY
Sbjct: 219 IEVYIARLRRKLEGS----PLRIETQRGTGY 245


>gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24]
 gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24]
 gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24]
          Length = 226

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|229042428|ref|ZP_04190174.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229108177|ref|ZP_04237799.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126003|ref|ZP_04255026.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228657428|gb|EEL13243.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228675193|gb|EEL30415.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228726882|gb|EEL78093.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 228

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 76  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 136 GIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 194

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223


>gi|30018758|ref|NP_830389.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|29894299|gb|AAP07590.1| Two-component response regulator [Bacillus cereus ATCC 14579]
          Length = 232

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 80  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 139

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 140 GIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 198

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 199 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 227


>gi|326801440|ref|YP_004319259.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326552204|gb|ADZ80589.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 227

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 105/225 (46%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V+ D++ L    +  L G++ +    F++ E  E L     + +        G G ++
Sbjct: 3   ILVIEDNKELASSIHDYLAGENYICELAFSATEAREKLLFFTYDCIILDIMLPDGNGLEL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L +    H    ++ IS   +L   +   + G DD + KP H  E+ AR+ AI+RR  
Sbjct: 63  LNLVK--EEHINGSILIISAKGALDDKIKGLEEGADDYLTKPFHLPELHARLRAIHRRKN 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  NN      I + ++  + ++ G+     R+E  +L Y + N+ + +++  I + ++G
Sbjct: 121 LDGNNIISFKEITLNTNTFELKIHGKALDATRKEFELLLYFLVNKNRVLSRQAIANHLWG 180

Query: 180 LF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + D     + V  H+  LRKK+    G D +D+   LGY  + N
Sbjct: 181 DYTDNLSNVDFVYQHVKNLRKKINMAGGDDYIDTIYGLGYKFNTN 225


>gi|229159651|ref|ZP_04287662.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623802|gb|EEK80617.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 76  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 136 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 194

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223


>gi|39998208|ref|NP_954159.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39985154|gb|AAR36509.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
          Length = 227

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 11/215 (5%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L++D Y+ L G D   L G    E   W++  A  D+  ++  L G+    LE+ + +R
Sbjct: 16  TLLRD-YLRLAGFDVCCLAG--GAEAAPWVREHA-PDLVLLDLMLPGRDG--LEICKDVR 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S VP+I I+        L   + G DD + KP   RE++ARV A+ RR       A  
Sbjct: 70  VFSSVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSGPGQTTALA 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE-AVEE 187
           G +   +  R   + G    L   E ++L++L A+ G+  ++ Q+   IY   DE  V +
Sbjct: 130 GLVMDGACYR-AALDGHELDLTAVEFKLLQFLAASPGRIYSRQQLMDRIYP--DERVVAD 186

Query: 188 NVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             ++SHI KLRKK+ +   G D + S   +GY  +
Sbjct: 187 RTIDSHIKKLRKKIADVAPGEDLIHSVYGVGYKFE 221


>gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 226

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRTLRARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +VS+   E G +R+  +     V G    LP +E  +LE  + N G+ + + Q+   +
Sbjct: 122 TEEVSDTTLEVGRVRMDVERHVVTVDGNQVSLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+  + G
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEAEPG 209


>gi|157267317|gb|ABV26372.1| PhoP [Proteus mirabilis]
          Length = 230

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L++      F D G  ++     +  +   + +  DV+ ++  L    E  +
Sbjct: 9   ILIIEDNILLRHHLSVQFRDAGHQVDAAQDAKEADHFIAESTPDVAIVDLGL--PDEDGI 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R ++  +P++ ++   S Q  +   ++G DD V KP H  EI+ARV A+ RR +
Sbjct: 67  SLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMRRNM 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    ++  + GE   L   E  ILE LM N+ K V+K  +   +Y 
Sbjct: 127 GIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQLYP 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK+  K   D + + R  GY  D
Sbjct: 187 -DAEQRESHTIDVLMGRLRKKILQKYDNDVIVTVRGQGYRFD 227


>gi|126728700|ref|ZP_01744515.1| probable two-component response regulator protein [Sagittula
           stellata E-37]
 gi|126710630|gb|EBA09681.1| probable two-component response regulator protein [Sagittula
           stellata E-37]
          Length = 225

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 22/230 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIGK- 56
            +L +D   V D  +A   + G S++    G ++L +  +       D++ ++  L G  
Sbjct: 3   IMLAEDDTKVADYIVAGLSEHGHSVDHVADGRDALSYLLYNDC----DLAILDRMLPGMD 58

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL+  R   +   +P++ ++    +   ++   +G DD + KP H  E++AR+ AI 
Sbjct: 59  GLSVLKALRA--SKKSLPVLFLTAMGQVDDRVEGLAAGSDDYLTKPFHFSELVARIDAIV 116

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR   +  RAE  P+    D       R    QG V  L  +E  ILE LM N G+ V +
Sbjct: 117 RR--KTETRAE--PVLTVHDLTLDLLARTATRQGTVMELHSKEFAILEILMRNSGRVVTR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           T +   ++  F+      VVE+H+S+LR K+        + + R  GYS+
Sbjct: 173 TLLLERVWN-FNFDPNTTVVETHMSRLRAKVDKPFETPLIHTIRNTGYSM 221


>gi|329849819|ref|ZP_08264665.1| feuP protein [Asticcacaulis biprosthecum C19]
 gi|328841730|gb|EGF91300.1| feuP protein [Asticcacaulis biprosthecum C19]
          Length = 226

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  R     P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ 
Sbjct: 59  GVSVLE--RWRREGKMTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALV 116

Query: 117 RRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR   +   A+     G +R+        V GE   L   E R+L YLM ++ + +++T+
Sbjct: 117 RR---AAGHAQPLLVCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQNRVISRTE 173

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +Y   FD   + N +E  + +LRKK+ N    D +++ R LGY +
Sbjct: 174 LVEHLYDQDFDR--DSNTIEVFMGRLRKKIGN----DRIETVRGLGYRL 216


>gi|325066495|ref|ZP_08125168.1| PhoP-like protein [Actinomyces oris K20]
          Length = 238

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 34/225 (15%)

Query: 23  GVSLEGFNSLEFE------EWLQSSARED-VSAIEAFLIGKGEKVLELPRI--------I 67
           G+  +GF  +E E      E  ++S R   V  I+  L+      L LPR+        I
Sbjct: 23  GLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLD-----LMLPRLDGTEVCTRI 77

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S VP+I ++   +    +   + G DD V KP  +RE+LAR+ A+ RR + +    E
Sbjct: 78  RRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKAVLRRSRAAAPEPE 137

Query: 128 ----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G +R+  +  +  V GEV  +P RE  +LE  + + G+ + ++QI   ++G  D 
Sbjct: 138 PVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTRSQILERLWG-PDY 196

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDWN 223
             +   ++ HI    K+LR ++  D      + + R LGY +D +
Sbjct: 197 EGDTKTLDVHI----KRLRGRIEVDASKPVLITTVRGLGYRLDGD 237


>gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 233

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 20/208 (9%)

Query: 18  LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELP 64
           L  DD V L     + L  E++    AR+   A+E F + + + V           +E+ 
Sbjct: 7   LIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIMMPGLDGMEVC 66

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA S VP+I +S   +    +     G DD + KP    E++ARV A  RR K+S  
Sbjct: 67  RRIRAESNVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLRRFKMSAV 126

Query: 125 RAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +  +S       G +  + G    L  +E  +L +L  +  + + + QIF+ ++
Sbjct: 127 PEPKTRLLSYSGLEIDVQGYEAALAGRPLELTTKEFELLRFLALHPNQVLTREQIFANVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206
           G F+E+ + N V  HI KLR+K+ + L 
Sbjct: 187 G-FNESGDLNTVTVHIKKLREKIESDLA 213


>gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 225

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 23/219 (10%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           RAL  +GY+        +LEG   L+    L    R D+  ++  L   G   LE+ + +
Sbjct: 20  RALTYEGYLV-----ESALEGETGLQ----LAREHRPDLIILDWML--PGMDGLEVCQRL 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R     P++ ++   +LQ  +   D+G DD + KP    E+LAR+ A+ RR ++     E
Sbjct: 69  RTLCNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALLRRTQM-----E 123

Query: 128 TGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             P+  F+D       R         PL  +E  +LE  + +  + + +  IF  ++G +
Sbjct: 124 RAPVLSFADLTLDTSTRQATRGNRTIPLTAKEYDLLELFLRHPRQVLTREMIFDRVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E NV++ +I  LR+KL +      + + R +GY +
Sbjct: 183 DFGGESNVLDVYIRYLRQKLESDGEPRLLHTVRGVGYVL 221


>gi|255655475|ref|ZP_05400884.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296451467|ref|ZP_06893204.1| response regulator [Clostridium difficile NAP08]
 gi|296880184|ref|ZP_06904150.1| response regulator [Clostridium difficile NAP07]
 gi|296259734|gb|EFH06592.1| response regulator [Clostridium difficile NAP08]
 gi|296428773|gb|EFH14654.1| response regulator [Clostridium difficile NAP07]
          Length = 241

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 97/195 (49%), Gaps = 22/195 (11%)

Query: 40  SSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91
           SS +E +S+ E  LI        G G    EL + IR  SQ+P+I ++        +   
Sbjct: 42  SSGKEMISSNEYSLILLDVTLPDGTG---YELCQYIRGFSQIPIIFLTACDEEVNIVMGL 98

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--- 148
           D G DD + KP   RE+++R+ A+ RR   +N   E+  I  F D     ++  V+    
Sbjct: 99  DIGGDDYITKPFRIRELISRIKAVLRR--KANTVEESKKILKFGDLSIYTLEARVYKNDK 156

Query: 149 ---LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L   E ++L  L+ N+   +++TQI   ++ +  + V +N +  +I +LR+K+ + L
Sbjct: 157 EVFLTSVEYKLLLILIQNKNTVLSRTQILEKLWDVTYDFVNDNTLTVYIKRLREKIGDDL 216

Query: 206 GFDP--VDSKRFLGY 218
             +P  +++ R LGY
Sbjct: 217 C-EPIYIETVRGLGY 230


>gi|254387142|ref|ZP_05002413.1| response regulator [Streptomyces sp. Mg1]
 gi|194345958|gb|EDX26924.1| response regulator [Streptomyces sp. Mg1]
          Length = 223

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 59  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 206


>gi|326772505|ref|ZP_08231789.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
 gi|326637137|gb|EGE38039.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
          Length = 243

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 34/225 (15%)

Query: 23  GVSLEGFNSLEFE------EWLQSSARED-VSAIEAFLIGKGEKVLELPRI--------I 67
           G+  +GF  +E E      E  ++S R   V  I+  L+      L LPR+        I
Sbjct: 26  GLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLD-----LMLPRLDGTGVCTRI 80

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S VP+I ++   +    +   + G DD V KP  +RE+LAR+ A+ RR + +    E
Sbjct: 81  RRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKAVLRRSRAAAPEPE 140

Query: 128 ----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G +R+  +  +  V GEV  +P RE  +LE  + + G+ + ++QI   ++G  D 
Sbjct: 141 PVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTRSQILERLWG-PDY 199

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDWN 223
             +   ++ HI    K+LR ++  D      + + R LGY +D +
Sbjct: 200 EGDTKTLDVHI----KRLRGRIEVDASKPVLITTVRGLGYRLDGD 240


>gi|322392158|ref|ZP_08065620.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145058|gb|EFX40457.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 224

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G + V     +  V G V  L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDLTVNLSTNEVRVDGTVVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  ++G FD     +VVE ++SK+RKKL+     + 
Sbjct: 151 LGKEFELLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGSDFAEN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|260769434|ref|ZP_05878367.1| two-component system response regulator QseB [Vibrio furnissii CIP
           102972]
 gi|260614772|gb|EEX39958.1| two-component system response regulator QseB [Vibrio furnissii CIP
           102972]
 gi|315181964|gb|ADT88877.1| DNA-binding response regulator [Vibrio furnissii NCTC 11218]
          Length = 218

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++ L  I RA   +P++ ++    +   +   D G DD + KP    E++AR+  + RR 
Sbjct: 60  LMVLRHIRRAGFTLPILILTARDDIDDRVKGLDGGADDYLIKPFALEELMARLRVLIRRQ 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + R + G + +    +  + QG    L   E ++L  LM + G+ ++K Q+  +++
Sbjct: 120 SGYCDTRIDVGELSLSLSEQSVDFQGNRLKLTNNEFKLLASLMTHAGRVLSKEQLQQSLH 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE   +N +E HI  LRKK+ N +    + + R +GY I+
Sbjct: 180 G-WDEGASDNAIEVHIHNLRKKVSNHV----IKNIRGVGYIIE 217


>gi|323359874|ref|YP_004226270.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323276245|dbj|BAJ76390.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 224

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++   +     +G + EG           S+ R D+  ++  +   G   + 
Sbjct: 8   LVLDDDETIRLSVVTALRAEGFTAEGAPDGTDLTARLSAFRPDLVVLDWMM--PGPAGIR 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +IRA     +I ++    +   L  F  G DD V KP    E++AR  A+ RR    
Sbjct: 66  LLPVIRAEGDTAVIMLTARDEVDDRLRGFAEGADDYVTKPFTVAELVARTGAVLRRRGRL 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + V  D       G    L   E R+L+ L  +RG+ ++K QI + ++G  D
Sbjct: 126 PQTIAIGDLVVDPDAAVAHRAGGPLDLTATEFRLLQLLAESRGRTLSKGQILTQVWGYDD 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N+VE H+S LR+K+  + G   + + R LGY +
Sbjct: 186 --YDPNLVEVHLSALRRKMEAR-GPRLIHTVRGLGYRL 220


>gi|289178119|gb|ADC85365.1| YycF [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 255

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L R +    +VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR    
Sbjct: 83  LCRRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLEP 142

Query: 119 ----LKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   N+   T GPI +     +  + GE+   P +E  +LEYLM N+G+ + + Q+
Sbjct: 143 RASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQL 202

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
              ++G  D   +   ++ H+    K++R K+  DP     + + R LGY I
Sbjct: 203 IGRVWG-SDYVGDTKTLDVHV----KRIRAKIEADPSNPALLTTVRGLGYRI 249


>gi|256847496|ref|ZP_05552942.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256716160|gb|EEU31135.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 228

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 11/204 (5%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+ +   L+    L+++  ED   I   L+      +E+ R +R     P+I ++   S
Sbjct: 24  EGYETDVELDGRAGLEAALNEDFDVILLDLMLPELNGIEVARRVREEKNTPIIIMTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAETG----PIRVFSD 136
           +   +   D G DD + KP    E+LARV A+ RR+ +   +NN  +T      + +  +
Sbjct: 84  VIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISIEDGNNNNHQTTVKYQDLTIEKE 143

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R      EV  L +RE  +L  LM N    +++ ++ S ++G +D  VE NVV+ +I  
Sbjct: 144 NRVVRRGDEVINLTKREYELLLILMENINVVMSRQELLSKVWG-YDAKVETNVVDVYIRY 202

Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220
           LR K+        + + R  GY I
Sbjct: 203 LRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|254472679|ref|ZP_05086078.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211958143|gb|EEA93344.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 225

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 15/196 (7%)

Query: 35  EEWLQSSARE-DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92
           + +L ++ RE DV  ++    G  G  VL+  R    ++ VP++ ++   S++  ++  D
Sbjct: 35  DAFLNATTREYDVIVLDRMTPGLDGLSVLKALR--STNNSVPVLFLTALGSVEDRVEGLD 92

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEV 146
           +G DD + KP    E+LARV+A+ RR   S N  ET         ++    +     G+ 
Sbjct: 93  AGGDDYLPKPFAFSELLARVSALGRR--PSTNSGETTSCLEVEKFQLNLLKQQCTRAGQP 150

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKL 205
            PL  +E R+ E  + N+G+ + K  +   ++ + FD     +VVE+HIS+LR K+    
Sbjct: 151 VPLNAKEFRLFETFIRNKGRVLTKNMLLEKVWDMNFDPT--SSVVETHISRLRSKIEKPF 208

Query: 206 GFDPVDSKRFLGYSID 221
             + + + R  GY +D
Sbjct: 209 DIELIRTIRGAGYILD 224


>gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 227

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---R 117
           +E+ R IR  S +P+I ++    +   +   D G +D + KP    E+LAR+ A     R
Sbjct: 63  IEVLRKIRQTSTIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAALKAGR 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +L    N  + G +++ +D        E+  L ++E  +L Y + N+   + + +I  A+
Sbjct: 123 QLVSKENTLQLGNLKLDTDMYKVTYGTEIIELTKKEFDLLHYFLENKNIVLTRDKILQAV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G +D   + N+V+ +I  LR K+ +K     + + R +GY
Sbjct: 183 WG-YDYIGDTNIVDVYIRYLRSKIDDKYNIKLIHTVRGVGY 222


>gi|253578135|ref|ZP_04855407.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850453|gb|EES78411.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 79/145 (54%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +S+VP+I ++     +  L  FD GVD+ ++KP   + ++ARV AI RR   
Sbjct: 73  EVCREIRKNSKVPIIMLTARSDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTGQ 132

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  +    G I +        V G+   L  +E  +L Y + N+G  +++ +I ++++ 
Sbjct: 133 NNPEDVISAGGIVIDKAAHLATVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVWN 192

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR K+ +K
Sbjct: 193 -YDYFGDARTIDTHVKKLRSKMGDK 216


>gi|197284770|ref|YP_002150642.1| DNA-binding transcriptional regulator PhoP [Proteus mirabilis
           HI4320]
 gi|227357776|ref|ZP_03842125.1| two-component response regulator [Proteus mirabilis ATCC 29906]
 gi|194682257|emb|CAR41989.1| two-component response regulator [Proteus mirabilis HI4320]
 gi|227162105|gb|EEI47119.1| two-component response regulator [Proteus mirabilis ATCC 29906]
          Length = 224

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L++      F D G  ++     +  +   + +  DV+ ++  L    E  +
Sbjct: 3   ILIIEDNILLRHHLSVQFRDAGHQVDAAQDAKEADHFIAESTPDVAIVDLGL--PDEDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R ++  +P++ ++   S Q  +   ++G DD V KP H  EI+ARV A+ RR +
Sbjct: 61  SLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMRRNM 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    ++  + GE   L   E  ILE LM N+ K V+K  +   +Y 
Sbjct: 121 GIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK+  K   D + + R  GY  D
Sbjct: 181 -DAEQRESHTIDVLMGRLRKKILQKYDNDVIVTVRGQGYRFD 221


>gi|239831448|ref|ZP_04679777.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
 gi|239823715|gb|EEQ95283.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
          Length = 235

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR    +++  
Sbjct: 74  RSGRAMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEL 133

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+ + +      + G    L   E R+L YLM +  + V++T++   +Y   FD   
Sbjct: 134 VCGPLYLDTKTSKASINGVALKLTSHEYRLLSYLMHHMDEVVSRTELVEHLYDQDFDR-- 191

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + +LRK    K+G D +++ R +GY I
Sbjct: 192 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRI 222


>gi|168185772|ref|ZP_02620407.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
 gi|169296218|gb|EDS78351.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
          Length = 223

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 27/221 (12%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
            L   GYI     DG+S +E F   +F+  +       +  I+ F++ +         II
Sbjct: 21  VLKNSGYIVEVASDGLSGIEMFEKYKFDLIILDIM---LPKIDGFVVCE---------II 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S VP+I ++        +  F+  +DD + KP     ++ RV A+ RR   SNN ++
Sbjct: 69  RKKSDVPIIMLTALGEEDDEIKGFELKIDDYITKPFSINLLIKRVEAVLRRY--SNNPSK 126

Query: 128 TG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     I+++       V      L  +E +ILE LM N G+   ++ +   I+G 
Sbjct: 127 NSEATLVFEEIKIYPSNYKTLVNENEIELTVKEFQILESLMKNPGQVFTRSSLLDMIWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +  V+++HI    K LR KL  D + + R +GY I+
Sbjct: 186 YDYFGDTRVIDTHI----KNLRQKLNVDYIKTIRGVGYKIE 222


>gi|117923628|ref|YP_864245.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117607384|gb|ABK42839.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 221

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GP 130
           VP+I ++ + +    +D   +G DD + KP H  E++AR+ A+ RR       A T  G 
Sbjct: 73  VPVIILTAWDAWHQRVDGLQAGGDDYLGKPFHMEELIARLNALIRRRHGVVRPALTLEGI 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
               +D +     GE+  L   E R+L YLM +  + ++K+Q+   IY  +DE  + NV+
Sbjct: 133 HLDETDQQLSLANGELHTLTHTEFRLLRYLMLHPDQLLSKSQLTEHIYA-YDEDRDSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E +I    K+LR  LG   ++++R  GY +
Sbjct: 192 EVYI----KRLRRLLGQQRIETRRGQGYRL 217


>gi|90419141|ref|ZP_01227052.1| DNA-binding two-compenent response regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337221|gb|EAS50926.1| DNA-binding two-compenent response regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 224

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 7/132 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E+LAR+ A+ RR    +++    GP+R+ +      + G    L
Sbjct: 91  IDAGADDYVTKPFHVEEVLARLRALIRRAAGHASSEIHCGPLRLDTRAARVTLDGTALKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L+YLM ++ + V++T++   +Y   FD   + N +E  + +LRKKL    G +
Sbjct: 151 TSHEYRLLDYLMHHQDQIVSRTELIEHLYDQDFDR--DSNTIEVFVGRLRKKLG---GAE 205

Query: 209 PVDSKRFLGYSI 220
            +++ R  GY +
Sbjct: 206 LIETVRGQGYRM 217


>gi|311696375|gb|ADP99248.1| DNA-binding response regulator [marine bacterium HP15]
          Length = 226

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 13/194 (6%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDS 93
           +E +  +A ED   +    +  G   L + + +RA  +QVP++ +S    +   ++    
Sbjct: 34  KEGMMMAASEDYDIMIVDRMLPGMDGLSIIKTVRATGNQVPVLILSALGDVDDRVEGLRG 93

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVF 147
           G DD + KP    E+LAR+ ++ RR + S   AET  +   +D       R  +  G+  
Sbjct: 94  GGDDYLTKPFSFTELLARIESLVRRNRQS---AETETVLRVADLEMDLLARTVKRAGQNI 150

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG 206
            +  RE R+LEYLM N G+ V +T +   ++   FD   + NV++ HIS+LR K+  +  
Sbjct: 151 DVQPREFRLLEYLMRNAGQVVTRTMLLEKVWDYHFDP--QTNVIDVHISRLRAKIDKEFD 208

Query: 207 FDPVDSKRFLGYSI 220
              + + R  GY +
Sbjct: 209 TPLLQTIRGAGYML 222


>gi|258516072|ref|YP_003192294.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779777|gb|ACV63671.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 225

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 8/162 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++        L  F+ G D+ V KP   + ++ARV A+ RR+   
Sbjct: 66  VCREIRKTSHVPIIMLTARAEESDELFGFELGADEYVTKPFSPKILVARVQALLRRIAEH 125

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI--YG 179
            N+      + +   GR   V G    L  +E  +L YL+ N+G+ + + QI +A+  Y 
Sbjct: 126 KNQMISIEGLEIDESGRCVTVDGVPLDLSMKEFELLNYLVNNQGRALNRDQILNAVWDYN 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F +A     V++HI  LR KL  K  F  + + R LGY  +
Sbjct: 186 YFGDA---RTVDTHIKNLRHKLGAKGLF--IKTIRGLGYKFE 222


>gi|218514582|ref|ZP_03511422.1| probable two-component response regulator protein [Rhizobium etli
           8C-3]
          Length = 223

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 14/169 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE +  +P + R     P+I ++   + +  ++  D G DD + KP    E++AR+ A+ 
Sbjct: 57  GEGLRFIPELRRTGKDTPIIVLTALNAPKERVEGLDLGADDYLGKPFLVEELMARLRAVL 116

Query: 117 RR------LKVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR      LK++  R    P+ +  + G  P        LPRRE  +L  L   + K V 
Sbjct: 117 RRPPSLSELKITAGRMVIDPLHLSVTVGDTP------LDLPRRELLVLAALARRKEKTVL 170

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ + +A+Y  ++E ++ N +++HIS+LRK+L +      + + R +GY
Sbjct: 171 RSTLEAAVYN-YEEEIQSNALDAHISRLRKRLADAGAEVSIHNIRGVGY 218


>gi|183601907|ref|ZP_02963276.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682821|ref|YP_002469204.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190397|ref|YP_002967791.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195803|ref|YP_002969358.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218792|gb|EDT89434.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620471|gb|ACL28628.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248789|gb|ACS45729.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250357|gb|ACS47296.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793384|gb|ADG32919.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 235

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L R +    +VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR    
Sbjct: 63  LCRRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLEP 122

Query: 119 ----LKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   N+   T GPI +     +  + GE+   P +E  +LEYLM N+G+ + + Q+
Sbjct: 123 RASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
              ++G  D   +   ++ H+    K++R K+  DP     + + R LGY I
Sbjct: 183 IGRVWG-SDYVGDTKTLDVHV----KRIRAKIEADPSNPALLTTVRGLGYRI 229


>gi|227872835|ref|ZP_03991146.1| two component response regulator [Oribacterium sinus F0268]
 gi|227841305|gb|EEJ51624.1| two component response regulator [Oribacterium sinus F0268]
          Length = 228

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 1/146 (0%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P++ ++    L+  ++  + G D  + KP   RE+LA ++A+ RR     N    G + 
Sbjct: 73  LPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRRQGQEVNSLSFGDLS 132

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  D +D         L ++E  ++  L+  + + ++K QI   ++G   +AV EN VE 
Sbjct: 133 LDLDSKDLSSGAHSLKLSKKEFELMRMLLQGKNQILSKEQILQKVWGYDSDAV-ENHVEV 191

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++  LRKKLR       + S+R LGY
Sbjct: 192 YVGFLRKKLRLLESRVSIQSRRGLGY 217


>gi|86750565|ref|YP_487061.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573593|gb|ABD08150.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 257

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 8/130 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD+G DD V KP H  E+LAR+ A+ RR    + +    GP+ + +      V+G    L
Sbjct: 119 FDAGADDYVAKPFHLEEVLARIRALLRRSAGHAQSELTCGPVVLDTRTGRVSVRGHPVKL 178

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + ++RK    KL  D
Sbjct: 179 TSHEYRLLAYLMHHSGRVVSRTELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLDVD 232

Query: 209 PVDSKRFLGY 218
            + + R LGY
Sbjct: 233 IIQTVRGLGY 242


>gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 11/153 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K  E+ + IR  S+ P+I +S    ++  +   D+G DD + KP    E+ AR+ A  
Sbjct: 58  GMKGYEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANL 117

Query: 117 RRLKVSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           RR K++ NR E  P RVFS        D  D   +G    L  +E ++L  L+ N+    
Sbjct: 118 RRSKMNANRNE--PKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVF 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  +I+  I+G+ D   +   V  HIS LR+K+
Sbjct: 176 SAEKIYDQIWGI-DHCGDLKTVMVHISNLRRKI 207


>gi|312866100|ref|ZP_07726321.1| putative response regulator ArlR [Streptococcus downei F0415]
 gi|311098504|gb|EFQ56727.1| putative response regulator ArlR [Streptococcus downei F0415]
          Length = 224

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R    N++  T G +   +     +V G+V  L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKINDKLLTYGDLECDTSTNTVKVNGKVVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  I+G FD     +VVE ++SK+RKKL+       
Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRIWG-FDSDTTVSVVEVYVSKIRKKLKGTDFEKC 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|290969322|ref|ZP_06560847.1| response regulator receiver domain protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780828|gb|EFD93431.1| response regulator receiver domain protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 219

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 2/137 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S VP+I ++        L  +D GVD+ V KP   + ++A++ A++RR K +  
Sbjct: 65  REIRRESAVPIIMLTAKGEEIDQLFAYDLGVDEYVTKPFSPKILVAKIKAVFRRSKHAAE 124

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E   + +  D R   + G+   L   E ++L YLM+N GK +++ QI + ++  +D  
Sbjct: 125 -GEACGVCLDKDARQVVLDGKNVDLSPTEYKLLNYLMSNTGKALSRRQILNQVWN-YDYY 182

Query: 185 VEENVVESHISKLRKKL 201
            +   V++HI++LR KL
Sbjct: 183 GDLRTVDTHINRLRIKL 199


>gi|260583532|ref|ZP_05851280.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC
           700633]
 gi|260158158|gb|EEW93226.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC
           700633]
          Length = 231

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 8/171 (4%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           LQ++  ED   I   L+      LE+ R +R   + P+I ++   S+   +   D G DD
Sbjct: 41  LQAATDEDWDVILLDLMLPELNGLEVVRRLRQVKKTPIIIMTARDSVMDRVTGLDQGADD 100

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSD------GRDPEVQGEVFPLP 150
            V KP    EILAR+ A++RRL +    R +   I  + D       R     GE+  L 
Sbjct: 101 YVVKPFEIEEILARIRALFRRLSIEEEARVQKQTILEYRDLVIEKENRTVRRNGELIDLT 160

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +RE  +L  LM N    +++  + + ++G +   VE NV++ +I  LR K+
Sbjct: 161 KREYELLLMLMENINVVLSREVLLNQVWG-YKMEVETNVIDVYIRYLRNKI 210


>gi|332526928|ref|ZP_08403021.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332111370|gb|EGJ11354.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 223

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+    + VP++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR L  
Sbjct: 63  LKRLRARGASVPVLILTAADSVEQRVKGLDLGADDYMAKPFSLQELEARVRALTRRGLGT 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +++  + GP+   + GR   +  ++  L  RE  +LE L+   G+ V+K Q+   +   +
Sbjct: 123 ASSVIKHGPLTFDATGRVAYLNDQMIELSARELSLLEVLLQRSGRLVSKDQLVERLCE-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 182 GEEVSNNAIEVYIHRLRKKIEQ--GPVRIATVRGLGYCLE 219


>gi|229028363|ref|ZP_04184487.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732911|gb|EEL83769.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 229

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 77  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 137 GIELFGKDKDIQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 195

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224


>gi|254471900|ref|ZP_05085301.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211959102|gb|EEA94301.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 219

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R  R    +P++ ++        +   D+G DD V KP H  E+LARV A+ RR   +
Sbjct: 61  LERWRRDGHSMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAAGL 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           ++N    G I + +        G    L   E R+L YLM ++G+ +++T++   +Y   
Sbjct: 121 ASNEISIGDIVLDTKAGKVTKNGMSVKLTSHEFRLLSYLMHHKGRVISRTELVEHLYDQD 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + N +E  + +LRKK  + L    +++ R LGY +
Sbjct: 181 FDR--DSNTIEVFVGRLRKKFGSSL----IETVRGLGYRL 214


>gi|110639900|ref|YP_680110.1| two-component system response regulator [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110282581|gb|ABG60767.1| two-component system response regulator [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 225

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)

Query: 55  GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G G  +L EL R+ +A +   +I IS   S++  +   + G DD + KP H  E+ ARV 
Sbjct: 57  GSGFDILKELKRLDKASN---VIIISAKNSIEDKVAGLNLGADDYLIKPFHIAELTARVK 113

Query: 114 AIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++ RR  +   N  E   +++  + R   +  E   L R+E  +L Y M N+ + + KT 
Sbjct: 114 SVLRRKTLKGKNELEINNVKIQFEDRVAFINNEPIALNRKEFDVLAYFMVNKNRLINKTS 173

Query: 173 IFSAIYGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G F DE+ +   + S I  LRKKL+++     + +   +GY +
Sbjct: 174 LAEHVWGDFTDESDDFEFIYSQIKNLRKKLKDQQAAIEIQAVYGIGYKL 222


>gi|296501330|ref|YP_003663030.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296322382|gb|ADH05310.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 131 GIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218


>gi|163854114|ref|YP_001642157.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
 gi|163665719|gb|ABY33086.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
          Length = 239

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R IRA  +   +P+I ++        +    +G DD V KP    E+LARV A+ R
Sbjct: 68  IELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLR 127

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K ++  +    G I +         QG    L   E ++LEYLM + G+  ++ Q+  
Sbjct: 128 RAKPTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLD 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS D
Sbjct: 188 GVWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFD 232


>gi|293607199|ref|ZP_06689540.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
           43553]
 gi|292814291|gb|EFF73431.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
           43553]
          Length = 219

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 12/182 (6%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           DV   +A ++  G  V++   +++    A   +P++ ++   +    +   D+G DD + 
Sbjct: 41  DVETFDAVVLDLGLPVMDGLTVLKLWRAAQRNMPVLILTARDNWHEKVAGIDAGADDYLT 100

Query: 101 KPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
           KP H  E+LARV A+ RR    ++ +   GP+ + +      + G+   L   E ++L  
Sbjct: 101 KPFHMEELLARVRALLRRSTAHASAQWRCGPLMLDTRQARVTIDGQALSLTSHEFKVLSV 160

Query: 160 LMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           LM   G+ V++T++   +Y   FD   + N ++  I++LRKKL        +++ R LGY
Sbjct: 161 LMQRAGEVVSRTELIDHVYAQDFDR--DSNTIDVFIARLRKKLPPG----TIETVRGLGY 214

Query: 219 SI 220
            +
Sbjct: 215 RL 216


>gi|307705285|ref|ZP_07642149.1| response regulator [Streptococcus mitis SK597]
 gi|307621167|gb|EFO00240.1| response regulator [Streptococcus mitis SK597]
          Length = 218

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 18/225 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGISDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R    
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMTAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118

Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +TG I  + D +         + GE   +  +E  IL+YL+ N G+ + ++QI  A
Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASLAGEEVAINAKELEILDYLVKNEGRALTRSQIIDA 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   DE   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 238

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 11/138 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN---------NRAETGPIRVFSDGRDPEVQG 144
           G DD + KP   RE++ARV AI RR K+ +         N      +R+  +  +   QG
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTKLQDEPVSEVQDENSINIYDLRILPEFYEAYFQG 155

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RN 203
           E   L  +E  +L YL  N+G+ + + Q+ SA++  +D A +  +V+ HIS LR K+ +N
Sbjct: 156 EKLELTPKEFELLVYLARNKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEKN 214

Query: 204 KLGFDPVDSKRFLGYSID 221
                 + + R LGY ++
Sbjct: 215 TKKPAYIKTIRGLGYKLE 232


>gi|115523941|ref|YP_780852.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517888|gb|ABJ05872.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 231

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  R    +P++ ++        +  FD+G DD V+KP H  E+LAR+ A+ 
Sbjct: 59  GIAVLEAWR--RNARAMPVLILTARDRWSDKVQGFDAGADDYVSKPFHLEEVLARIRALL 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++  
Sbjct: 117 RRTAGHAQSELSCGPVVLDTRTGRVSVNGAPVKMTSHEYRLLAYLMHHTGRVVSRTELVE 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   FD   + N +E  + ++R+    KL  D + + R LGY
Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRR----KLDVDIIQTVRGLGY 214


>gi|59713619|ref|YP_206394.1| putative transcriptional regulatory protein [Vibrio fischeri ES114]
 gi|59481867|gb|AAW87506.1| putative transcriptional regulatory protein [Vibrio fischeri ES114]
          Length = 225

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 18/216 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           +AL ++G+I    DDG           +E L  +   D   I    +      L++   I
Sbjct: 18  KALEQEGFIVDSSDDG-----------KEGLMMAISCDYQLIILDRMLPNLDGLKILSAI 66

Query: 68  RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           RA  +  P++ +S   S+   ++   +G DD + KP    E+LAR+  I RR   ++ ++
Sbjct: 67  RATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALAELLARINIILRRNRPIESAS 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           N  +   + +    +   +   + PL  +E  +L YL  N  + V++ ++F A +   FD
Sbjct: 127 NELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAAWDYHFD 186

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              + NV++ HI+KLRKKL N    D +++ R  GY
Sbjct: 187 P--KTNVIDVHIAKLRKKLDNSGAVDLIETVRGAGY 220


>gi|239815367|ref|YP_002944277.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239801944|gb|ACS19011.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 219

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA  Q +P++  +   S+Q  ++  D+G DD V KP    E+LAR+ A+ RR 
Sbjct: 60  LEVLRSLRARKQRMPVLIATARDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +  RAE       + +    R+  V+G+   L  RE  +LE L+A  G  +++ Q+  
Sbjct: 119 --AAGRAEPVYEHMGVSINPATREVAVEGQPVVLSAREWAVLEPLIARPGMVLSRAQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y   DE +  N VE ++  LRK    KLG + + + R +GY +
Sbjct: 177 KLYSWKDE-ISSNAVEVYVHGLRK----KLGAELIRNVRGVGYMV 216


>gi|145297360|ref|YP_001140201.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850132|gb|ABO88453.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 218

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 8/151 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131
            P++ ++    L   ++  ++G DD + KP    E++ARV A+ RR    +++  E G +
Sbjct: 73  TPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAAGNASSILEIGGV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190
           R+         +G    L   E R+L YLM +RGK V+++++   IY   FD   + N V
Sbjct: 133 RLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYAQDFDR--DSNTV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  I ++RKK       D +++ R LGY I+
Sbjct: 191 EVFIGRIRKKTHA----DLIETVRGLGYRIN 217


>gi|307244117|ref|ZP_07526235.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492488|gb|EFM64523.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 226

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVF 147
            + G DD + KP   +E++AR+  + RR ++S+      E G I + +D     V G   
Sbjct: 93  LNVGADDYITKPFSIKELMARINTVLRRYRISDKSQPVIEAGNIVLNTDQYKLTVDGLKV 152

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLG 206
            L R+E  +L+ LM NRGK + +  +   ++G ++   E   V+ HI  LRKKL  ++  
Sbjct: 153 DLTRKEFELLKLLMENRGKVLKRDYLLEKVWG-YEFYGETRTVDVHIRHLRKKLGLDETS 211

Query: 207 FDPVDSKRFLGYSI 220
            + +D+ R LGY +
Sbjct: 212 ENGIDTIRGLGYKM 225


>gi|167770186|ref|ZP_02442239.1| hypothetical protein ANACOL_01529 [Anaerotruncus colihominis DSM
           17241]
 gi|167667508|gb|EDS11638.1| hypothetical protein ANACOL_01529 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 4/158 (2%)

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R A   +P+I ++   +L+     F +G DD + KPI   E+L RV+A+ RR ++
Sbjct: 69  LTRELREAGFDLPVIMVTARETLEDKHMGFLAGTDDYMVKPIDFEELLWRVSALLRRAQI 128

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +  E G I++  D      +     LP++E ++L  L+   GK   + Q+   I+GL
Sbjct: 129 ASGHTLEIGGIKLDYDALSVTTEQGTDVLPKKEFQLLFKLLNTPGKTFTRQQLMDDIWGL 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            D   +E  V+ HI +LR+K      F  V + R LGY
Sbjct: 189 -DSDADERTVDVHIKRLREKFGGFSQFKIV-TVRGLGY 224


>gi|297565541|ref|YP_003684513.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849990|gb|ADH63005.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 224

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 2/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  ++VP+I ++   S++  +     G DD + KP H  E+LAR+  +  R + 
Sbjct: 62  EVARRIRVGAEVPIIVLTAADSVERKVTLLSGGADDYIVKPFHPAELLARI-QVQLRHRE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +   G + V    R     G+   L  +E  +L  L    GK  ++T+I   ++G  
Sbjct: 121 GGEQVTIGELEVHLSKRQVFYDGQEVRLSPKEFELLSLLCTRPGKVFSRTEIEEHLWGRS 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E  + NVV+ H++ LR KLR    +  + + R +GY++
Sbjct: 181 LER-DSNVVDVHVANLRSKLRESGAYGYLRTVRGVGYAL 218


>gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098]
          Length = 226

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|218533059|ref|YP_002423875.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240141569|ref|YP_002966049.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254564081|ref|YP_003071176.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
 gi|218525362|gb|ACK85947.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240011546|gb|ACS42772.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254271359|emb|CAX27372.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
          Length = 234

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R IRA  +   +P+I ++        +    +G DD V KP    E+LARV A+ R
Sbjct: 63  IELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLR 122

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K ++  +    G I +         QG    L   E ++LEYLM + G+  ++ Q+  
Sbjct: 123 RAKPTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS D
Sbjct: 183 GVWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFD 227


>gi|314933599|ref|ZP_07840964.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
 gi|313653749|gb|EFS17506.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
          Length = 219

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR +
Sbjct: 61  LKICRQIRQEQSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  +   I +  D     V G    L + E  +L  L  NR   + + QI   ++G 
Sbjct: 120 PQKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F+  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 179 FNSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218


>gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 234

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR+    P+I ++        L   + G DD V KP   RE++ARV A+ RR+ 
Sbjct: 71  LEVLRRIRSSGHTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRVV 130

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++    E    GP+ + S+     + G    L   E R+LE L    GK  ++ ++  A 
Sbjct: 131 LAEAPKEVLRVGPLEIDSEKVVARLGGVRLELTPTEFRLLEALARTPGKAFSRAELLEA- 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             L D    E VV+ H+  LR+KL    G   +++ R +GY + W 
Sbjct: 190 -ALPDSDALERVVDVHLKNLRRKLEAAGGAGLLETVRGVGYRL-WT 233


>gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
           ATCC 53653]
          Length = 226

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|240142635|ref|YP_002967148.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
 gi|240012582|gb|ACS43807.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
          Length = 220

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 15/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D  ++ DG  A  G  G ++E   +    +   +++R  V  ++  L  G G +V
Sbjct: 3   ILVVEDDPILSDGLRAGLGLSGATVECVGTCADADAALATSRFGVVVLDLMLPDGSGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R     + V L+   D  ++   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LRGLRRRDDRTPVVLLTARD--AVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRR-- 118

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +  RA    E G IR+   G    V G   P+ RRE  +L  LM       +KT++   
Sbjct: 119 -AAGRASAGLEHGGIRLDPAGLVVTVDGVNVPVSRREFMVLAALMERPNVLRSKTELEER 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG + E VE N VE H+  LR     K+G   +++ R +GY +
Sbjct: 178 LYG-WQEEVESNAVEVHVHNLRA----KIGKQAIETVRGVGYRM 216


>gi|50954116|ref|YP_061404.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950598|gb|AAT88299.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 240

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 12/207 (5%)

Query: 23  GVSLEGFNSLEFEEWLQS--SAREDV---SAIEAFLIGKGEKVLELPRIIR-AHSQVPLI 76
           G++ EG++       + +  + R+D    +AI+  L   G    EL R IR + + +P++
Sbjct: 19  GLAAEGYDVTLMTNGVDALIALRDDTYSAAAIDVML--PGMSGFELCRHIRDSGTAMPIL 76

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVF 134
            ++   +++  +   DSG DD + KP    E+ ARV A+ RR + +  R +   G + + 
Sbjct: 77  LLTARDAIEDRVHGLDSGADDYLTKPFAFAELAARVRALLRR-EPTGMRPQIIVGRLTID 135

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
           S      V G   PL RRE  +L     N  K +++  I  +++G   E +  NV++ ++
Sbjct: 136 SHEHQTLVSGHEMPLSRREFTLLRLFATNPDKTLSRADILESVWG-TTENIGTNVIDQYV 194

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S LRKKL        + ++R  GY +D
Sbjct: 195 SYLRKKLDVAGAGLSIVTERGRGYRLD 221


>gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
 gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
          Length = 225

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 13/168 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA S VP+I ++        +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQIRATSSVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGTE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    E GP+R+  +     V G    LP +E  +LE  + N G+ + + Q+   ++
Sbjct: 122 PDAAPATLEAGPVRMDVERHVVTVDGNEQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
           G  D   +   ++ H+    K+LR KL  DP + K     R LGY +D
Sbjct: 182 G-SDYVGDTKTLDVHV----KRLRAKLEPDPSEPKFLVTVRGLGYKLD 224


>gi|288962372|ref|YP_003452667.1| two-component response regulator [Azospirillum sp. B510]
 gi|288914638|dbj|BAI76123.1| two-component response regulator [Azospirillum sp. B510]
          Length = 246

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R+  A    P++ +S    +   +     G DD + KP   RE++AR+ AI RR K  
Sbjct: 63  LRRLRAARVTTPILILSGLTEMDNKIKGLGFGADDYLTKPFDKRELIARIQAIVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S++   TG + V  D R  EV      L  +E  ILE L   +G  + K    + +YG  
Sbjct: 123 SDSIIRTGRLTVNLDTRTVEVDQSPLHLTGKEYGILELLSLRKGTTLTKEMFLNHLYGGM 182

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE  E  +++  + KLRKKL
Sbjct: 183 DEP-ELKIIDVFVCKLRKKL 201


>gi|256059536|ref|ZP_05449736.1| DNA-binding response regulator [Brucella neotomae 5K33]
 gi|261323505|ref|ZP_05962702.1| transcriptional regulatory protein [Brucella neotomae 5K33]
 gi|261299485|gb|EEY02982.1| transcriptional regulatory protein [Brucella neotomae 5K33]
          Length = 225

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D  ++          +G  ++  + L+       S R D+  ++  L  G+G   
Sbjct: 3   IILIEDDPILGAAVRDHIATEGHCVDWVSRLDTAHDYMESVRYDLVLLDLMLPDGQG--- 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119

Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y
Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD  VE N +E H+S+LRK    KLG   +++ R +GY +
Sbjct: 180 S-FDTEVESNTMEVHVSRLRK----KLGHAIIETVRGIGYRL 216


>gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 76/144 (52%), Gaps = 2/144 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR +SQVP++ ++     Q  L  F  GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  EVLKTIRKYSQVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILRRSSP 124

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  + G I +       E+ G+   L  +E  ++ Y   N+G  +++ +I + ++  
Sbjct: 125 GAKDVIDVGGIHIDKTAHQVEIDGKPVDLSYKEFELMTYFAENQGIALSREKILNNVWN- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D   +   +++H+ KLR KL  K
Sbjct: 184 YDYFGDARTIDTHVKKLRSKLGEK 207


>gi|67458448|ref|YP_246072.1| transcriptional activator protein CzcR [Rickettsia felis URRWXCal2]
 gi|67003981|gb|AAY60907.1| Transcriptional activator protein CzcR [Rickettsia felis URRWXCal2]
          Length = 237

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 7/162 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           L R+  A  + P++ +S        +  F SG DD + KP    E++AR+ AI RR K  
Sbjct: 63  LLRLRAAKIKTPILILSSLTDTDQKITGFSSGTDDYLTKPFVREELIARIKAIVRRSKGH 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S  R +   + V  D R  EV G+   L  +E  ILE L+  RG  + K    + +Y 
Sbjct: 123 VASVFRFD--KVSVNLDTRTVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             DE  E  +++  I KLRKKL +  G  D +D+    GY +
Sbjct: 181 SVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTIWGRGYML 221


>gi|268607886|ref|ZP_06141617.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 223

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 9/160 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I++    P+I ++      +T+  FD G DD + KP   RE+++R+  + R    + +  
Sbjct: 67  IKSDGATPVIFLTASSDEFSTVTGFDLGADDYIAKPFRPRELISRIKNVLRLTGNTGSVT 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + G + V +        G    L   E R+L   + NRG  +++T++  +I+ +  E V 
Sbjct: 127 QLGDVLVDTVKGTASKNGNDLYLSALEYRLLLVFINNRGAVLSRTKLLESIWDIAGEYVN 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
           +N +  +I +LR+K+ +    DP D K     R LGY +D
Sbjct: 187 DNTLTVYIKRLREKIED----DPQDPKIIRTVRGLGYKVD 222


>gi|28210565|ref|NP_781509.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203002|gb|AAO35446.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 230

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 15/187 (8%)

Query: 45  DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D++ ++  + G  G KVL   + IR  S +P+I I+     +  +     G DD + KP 
Sbjct: 46  DLAILDIMMPGLDGFKVL---KKIREKSNIPVIFITARGEDENKILGLGLGADDYIVKPF 102

Query: 104 HHREILARVAAIYRRLKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
              E++ARV A++RR+   +       N+ E G + +  D       G    L  +E +I
Sbjct: 103 SPMEVVARVKALFRRVGTYSQNSSKDINKIENGELSLNKDSCTFYKNGNPIELNAKEYKI 162

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK--R 214
           +E+LM N+G+   K QI+  ++G ++   + N +  HIS +R K+ +    +P+  K  R
Sbjct: 163 MEFLMENKGRVHTKKQIYEKVWG-YEYYGDANTIMVHISHIRDKIEDNPK-EPIYLKTIR 220

Query: 215 FLGYSID 221
            +GY ++
Sbjct: 221 GIGYKLE 227


>gi|77408353|ref|ZP_00785094.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77173034|gb|EAO76162.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 228

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 9/168 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R+IR  SQ+P+I ++   +    +   + G DD + KP +  E+LAR+ +  RR   
Sbjct: 56  ELTRLIRQDSQIPIIMLAAKTTDMDRILGLNIGADDFITKPFNSLEVLARINSQLRRYYE 115

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K  N   + G + +  +  +    G+   L   E +IL  LM++ GK   KTQ++
Sbjct: 116 FNSLAKPKNQFIKIGELELDEEHVELTKNGKHIKLTATEFKILHILMSSPGKIYTKTQLY 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             I G + E  +E  +  HIS +R K+ +   +   + + R +GY I+
Sbjct: 176 EKINGRYLEG-DETTIMVHISNIRDKIEDDSKYPKYIKTLRGVGYKIE 222


>gi|330992747|ref|ZP_08316691.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp.
           SXCC-1]
 gi|329760225|gb|EGG76725.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp.
           SXCC-1]
          Length = 223

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 10/203 (4%)

Query: 22  DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIGISD 80
           DG +++ F ++E      ++   D   ++  L  G G  +L    I R  S + ++  + 
Sbjct: 23  DGHAVDWFTTIEDARAALATVAYDFMLLDLGLPDGNGRDLLR--EIRRTSSDIAILVTTA 80

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVFSDGR 138
              +   +     G DD + KP    E++AR+AA+ RR      +A+   G I +  + R
Sbjct: 81  EDQVSDRIAGLSDGADDYIVKPYDLNELVARIAAVARRYAAPRRQAQYHIGDITIDRENR 140

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
                G+   L  RE  I+E L  + G+  ++ QI +A+Y L D+ V+ N VE  IS+LR
Sbjct: 141 SVSRAGQGLNLTAREWAIMELLSRSPGRIYSRQQIDTALYAL-DQDVDSNTVEVFISRLR 199

Query: 199 KKLRNKLGFDPVDSKRFLGYSID 221
           +K+ N +    + + R  GY +D
Sbjct: 200 RKVGNTV----IRTIRGRGYCLD 218


>gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 226

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 13/197 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF    + +  E L    R+    I   L+  G    E+ R +R  S VP+I ++   S
Sbjct: 24  EGFEVTVAADGNEALSVFERDSADLILLDLMLPGMSGTEVCRQVRQRSNVPVIMLTAKDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGPIRVFSDGRD 139
               +   + G DD V KP   RE++ARV A+ RR     +  +     GP+R+  +   
Sbjct: 84  EIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGEQEEPMSATISAGPVRMDVERHV 143

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             V GE   LP +E  +LE L+ N G+ + + Q+   ++G  D   +   ++ H+    K
Sbjct: 144 VSVDGEQVSLPLKEFELLEMLLRNAGRVLTRGQLIDRVWG-SDYVGDTKTLDVHV----K 198

Query: 200 KLRNKLGFDPVDSKRFL 216
           +LR+K+  DP  S R+L
Sbjct: 199 RLRSKIEPDP-SSPRYL 214


>gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 230

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 6/162 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   D G DD + KP    E+LARV A +RR + 
Sbjct: 64  EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 122 SN--NRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   RAE    R   +    R      +V  L RRE  +L  LM N G  V +  + S 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G ++E  E NVV+ +I  LR K+  +     + + R LGY
Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGY 224


>gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 225

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 2/139 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR HS+VP+I ++        L  F+ G D+ ++KP   + ++ARV A+ RR  +     
Sbjct: 70  IREHSRVPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALLRRSGIQQEET 129

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G I +        V G+   L  +E  +L Y + NRG  +++ +I + ++  +D   
Sbjct: 130 VSVGGIEIDKSAHSVRVDGKELELSFKEYELLLYFVENRGIALSREKILNNVWN-YDYFG 188

Query: 186 EENVVESHISKLRKKLRNK 204
           +   +++H+ KLR KL++K
Sbjct: 189 DARTIDTHVKKLRAKLKSK 207


>gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 230

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 6/162 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   D G DD + KP    E+LARV A +RR + 
Sbjct: 64  EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 122 SN--NRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   RAE    R   +    R      +V  L RRE  +L  LM N G  V +  + S 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G ++E  E NVV+ +I  LR K+  +     + + R LGY
Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGY 224


>gi|260430399|ref|ZP_05784372.1| DNA-binding response regulator [Citreicella sp. SE45]
 gi|260418428|gb|EEX11685.1| DNA-binding response regulator [Citreicella sp. SE45]
          Length = 223

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 17/193 (8%)

Query: 45  DVSAIEAFLIGKGEKV----LELPR-----IIRAHSQ----VPLIGISDYPSLQTTLDFF 91
           D +  +AFL  +G  +    L LP      ++RA  +     P+I ++        +   
Sbjct: 32  DGAEADAFLAQEGADLVVLDLNLPHMDGLAVLRAMRRRGDGTPVILLTARSETAERVAGL 91

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           D+G DD + KP    E+ AR+ A+ RR  +    R   G +    + R     G    +P
Sbjct: 92  DAGADDYLTKPFEMDELEARLRAMARRKDLEFAARERLGALIFDRNARQLFQDGTPLDIP 151

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           R+E   LE L+   G+ V+K Q+ S +YG   +  +E  +E H+S+LRK+L    G   +
Sbjct: 152 RKEIATLECLLERSGRIVSKAQLISHVYGTGSD-TDETAIEPHVSRLRKRL-EPFGI-RI 208

Query: 211 DSKRFLGYSIDWN 223
            + R LGY +D N
Sbjct: 209 KTARGLGYMLDVN 221


>gi|229086169|ref|ZP_04218386.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228697141|gb|EEL49909.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 225

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S+VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESEVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V  N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVVEENTLSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G +D   ++  V++HI KLR KL +K
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209


>gi|229586314|ref|YP_002844815.1| Transcriptional activator protein CzcR [Rickettsia africae ESF-5]
 gi|228021364|gb|ACP53072.1| Transcriptional activator protein CzcR [Rickettsia africae ESF-5]
          Length = 237

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  + P++ +S        +  F SG DD + KP    E++AR+ AI RR   S
Sbjct: 63  LLRLRAAKIKTPILILSSLMDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A +      + V  D R  EV G+   L  +E  ILE L+  RG  + K    + +Y
Sbjct: 120 KGHAASVFRFDKVSVNLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              DE  E  +++  I KLRKKL +  G  D +D+    GY +
Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221


>gi|116512403|ref|YP_809619.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108057|gb|ABJ73197.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 230

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 6/162 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   D G DD + KP    E+LARV A +RR + 
Sbjct: 64  EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 122 SN--NRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   RAE    R   +    R      +V  L RRE  +L  LM N G  V +  + S 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G ++E  E NVV+ +I  LR K+  +     + + R LGY
Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGY 224


>gi|310827934|ref|YP_003960291.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739668|gb|ADO37328.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 227

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 14/152 (9%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE+VL   + +R  S   +I +S      T +    +G DD + KP ++ E+LAR+ A+ 
Sbjct: 62  GEEVL---KSLRQTSDTLVIAVSAKDDSPTKISLLKNGADDYITKPFNNEELLARIEALL 118

Query: 117 RRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR   S N + +G    +          +  ++G+   L +RE +ILE LM N  +  +K
Sbjct: 119 RR--NSGNTSLSGKTLTYKGLTLNPSTYEVYLKGQPLSLTKREYKILELLMQNPQRVFSK 176

Query: 171 TQIFSAIY-GLFDEAVEENVVESHISKLRKKL 201
             I+  ++  LF    E+N +  HIS LR+KL
Sbjct: 177 NVIYETVWEDLF--LGEDNAINVHISNLRQKL 206


>gi|308182574|ref|YP_003926701.1| putative transcriptional regulator [Helicobacter pylori PeCan4]
 gi|308064759|gb|ADO06651.1| putative transcriptional regulator [Helicobacter pylori PeCan4]
          Length = 223

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 32/231 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55
           M VL+ ++  V  G I    + G++ +GF      SLE  E+L      D+   +  ++ 
Sbjct: 1   MRVLLIEKNSVLGGEI----EKGLNAKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +  +  I   HS + ++  SD P+ +  +  F+ G DD + KP  +R I A VA I
Sbjct: 52  DKNALSFVSGIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109

Query: 116 YRRLKV-SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             RL+   +N  E G +       ++   GR+ EV+G+ F        +L +L  +R + 
Sbjct: 110 EARLRFWGSNVIEIGDLIISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+K Q+  AI+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212


>gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 231

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 8/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRTLRQKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V     E GP+R+  +     V+G+   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 DEVVLPAALEAGPVRMDVERHVVTVRGDNVQLPLKEFELLEVLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+    G  P  + + R LGY  +
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEEDPG-SPRYIVTVRGLGYKFE 225


>gi|145298120|ref|YP_001140961.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850892|gb|ABO89213.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 229

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 37/235 (15%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60
            +L++D  ++ DG +      G +++         WLQ         + A  + K E+  
Sbjct: 3   ILLVEDDVMLGDGMVDALRSSGYTVD---------WLQQ-------GLPALSVLKSEEFA 46

Query: 61  -----LELP--------RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106
                L LP        R +R   QV P++ ++   +L   +   D+G DD + KP   +
Sbjct: 47  ALILDLNLPDIDGISLLRKLRREGQVLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQ 106

Query: 107 EILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           E+ AR+ A+ RR K       E G I +  + +    +GE   L   E ++L+ L+   G
Sbjct: 107 ELNARLRALVRRSKGQAQAVLEYGDILIHPESQQVTYRGEPVKLTPHEYKLLQELVTQSG 166

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++K Q+  ++YG +DE  E N VE HI  LRKK  +    D + + R +GY +
Sbjct: 167 RVLSKDQLQQSLYG-WDEGAESNAVEVHIHHLRKKFYS----DLIRNIRGVGYIV 216


>gi|332523841|ref|ZP_08400093.1| putative response regulator ArlR [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315105|gb|EGJ28090.1| putative response regulator ArlR [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 224

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G +RV  +    +V      L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRTGKFNENSITFGNLRVDLNRNAVKVNDRAVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L YL+ N+   + K+QIF  I+G FD     +VVE ++SK+RKKL+N      
Sbjct: 151 LGKEYDLLIYLLQNQNVILPKSQIFDRIWG-FDSDTTISVVEVYVSKIRKKLKNTDFAAN 209

Query: 210 VDSKRFLGYSIDWN 223
           + + R +GY +  N
Sbjct: 210 LQTLRSVGYILKAN 223


>gi|307702057|ref|ZP_07639064.1| VncR, response regulator [Streptococcus mitis NCTC 12261]
 gi|307616544|gb|EFN95734.1| VncR, response regulator [Streptococcus mitis NCTC 12261]
          Length = 218

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 18/225 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGISDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R    
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118

Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +TG I  + D +         + GE   +  +E  IL+YL+ N G+ + ++QI  A
Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASLAGEEVAVNAKELEILDYLVKNEGRALTRSQIIDA 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   DE   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|258425096|ref|ZP_05687967.1| two component response regulator [Staphylococcus aureus A9635]
 gi|257844930|gb|EEV68973.1| two component response regulator [Staphylococcus aureus A9635]
          Length = 224

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 99/198 (50%), Gaps = 4/198 (2%)

Query: 26  LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           ++ +     E  L+   ++ V  +   ++  G    +L   ++    +P+I ++   +L 
Sbjct: 26  IDAYTQPSGEAALKLLEKQRVDIVVVDIMMDGMDGFQLCNTLKNDYDIPVIMLTARDALS 85

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQG 144
                F SG DD V KP   +E++ R+ A+ RR  +++N   T G + +     + +V  
Sbjct: 86  DKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSN 145

Query: 145 EVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   LP +E ++L +++A R K++  + QI   I+G +D   +E  V+ HI +LR++L+ 
Sbjct: 146 KTMTLPNKEFQLL-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKK 203

Query: 204 KLGFDPVDSKRFLGYSID 221
                 +++ R  GY ++
Sbjct: 204 LNATLTIETVRGQGYKVE 221


>gi|187935754|ref|YP_001884404.1| two-component response regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723907|gb|ACD25128.1| two-component response regulator [Clostridium botulinum B str.
           Eklund 17B]
          Length = 228

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+ K    ++  + +R  S +P+I ++    L   +  FD G DD + KP    E+LAR+
Sbjct: 57  LLTKNLNGMDFLKWVRKQSNIPIIVVTSNNCLFDKVLAFDIGADDYILKPFKAEELLARM 116

Query: 113 AAIYRRLKVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            AI RR  + +N+ +   I   S      +   +G +  LP +E  +L +L+ N  K   
Sbjct: 117 KAIMRRCSIESNKTDIISISDLSVNLSTYEVLFKGNIINLPPKEFELLVFLINNPNKVFT 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + ++   I+G  D   +   ++ HI +LR+K 
Sbjct: 177 RKELLDEIWG-NDYKSDCRTIDVHIKRLREKF 207


>gi|168178452|ref|ZP_02613116.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182671490|gb|EDT83464.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 228

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 18/197 (9%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY       G+  +E F S++ +  +      D+S         GE   E+ RIIR
Sbjct: 21  LEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDIS---------GE---EVCRIIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL   N+ +  
Sbjct: 69  QSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTYNSTSNL 128

Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I+G+ D  
Sbjct: 129 IFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIFGI-DFN 187

Query: 185 VEENVVESHISKLRKKL 201
             +  ++ HI  +RKK+
Sbjct: 188 GYDRTIDVHIKNIRKKI 204


>gi|148379930|ref|YP_001254471.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931088|ref|YP_001384228.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937795|ref|YP_001387768.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289414|emb|CAL83510.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927132|gb|ABS32632.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933709|gb|ABS39208.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 221

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 19/199 (9%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85
           +L   A + + A+E F  G  + ++    LP+I        IR  S +P+I ++     +
Sbjct: 27  YLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFVVCEIIRKESSMPIIMLTALGEEE 86

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142
             +  F+  VDD + KP     ++ RV A+ RR   L+ +N+      I ++       V
Sbjct: 87  DEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNSTLTFEEITIYPSNYKTLV 146

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             +   L  +E +ILE L++N G+  ++  + + I+G +D   +  V+++HI    K LR
Sbjct: 147 NNKEIELTYKEFQILEILISNVGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201

Query: 203 NKLGFDPVDSKRFLGYSID 221
            KL  D + + R +GY I+
Sbjct: 202 QKLNIDYIKTIRGVGYKIE 220


>gi|15892024|ref|NP_359738.1| transcriptional activator protein czcR [Rickettsia conorii str.
           Malish 7]
 gi|15619141|gb|AAL02639.1| transcriptional activator protein czcR [Rickettsia conorii str.
           Malish 7]
          Length = 237

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  + P++ +S        +  F SG DD + KP    E++AR+ AI RR   S
Sbjct: 63  LLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A +      + +  D R  EV G+   L  +E  ILE L+  RG  + K    + +Y
Sbjct: 120 KGHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              DE  E  +++  I KLRKKL +  G  D +D+    GY +
Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221


>gi|291297174|ref|YP_003508572.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290472133|gb|ADD29552.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 224

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA  +VP+I ++   +++  +     G DD + KP H  E+LAR+  +  R + 
Sbjct: 62  EVARRIRAGYEVPIIVLTAADAVERKVSLLSDGADDYIVKPFHPAELLARI-QVQLRHRE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +   G + V    R    +G+   L  +E  +L  L++  GK  ++ +I   ++G  
Sbjct: 121 GGEQISVGGLEVHLAKRQVLFEGQELRLSPKEFELLSLLVSRAGKVFSRQEIEEHLWGRQ 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E  + NVV+ HI+ LR KLR    +  + + R +GY++
Sbjct: 181 LER-DSNVVDVHIANLRAKLREAGAYGYLRTVRGVGYAL 218


>gi|197337216|ref|YP_002158034.1| probable transcriptional regulatory protein YedW [Vibrio fischeri
           MJ11]
 gi|197314468|gb|ACH63917.1| probable transcriptional regulatory protein YedW [Vibrio fischeri
           MJ11]
          Length = 225

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++   IRA  +  P++ +S   S+   ++   +G DD + KP    E+LAR+  I RR 
Sbjct: 60  LKILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALTELLARINIILRRN 119

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++ ++N  +   + +    +   +   + PL  +E  +L YL  N  + V++ ++F A
Sbjct: 120 RPIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEA 179

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   FD   + NV++ HI+KLRKKL N    D +++ R  GY
Sbjct: 180 AWDYHFDP--KTNVIDVHIAKLRKKLDNSGAVDLIETVRGAGY 220


>gi|238796000|ref|ZP_04639512.1| Two-component response regulator of virulence determinant [Yersinia
           mollaretii ATCC 43969]
 gi|238720205|gb|EEQ12009.1| Two-component response regulator of virulence determinant [Yersinia
           mollaretii ATCC 43969]
          Length = 218

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D AL++        + G  ++     +  ++       D++ I+  L   GE  L L 
Sbjct: 1   MEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLSLI 58

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS 122
           R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + ++
Sbjct: 59  RRWRSHQANLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIGLA 118

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y    
Sbjct: 119 SQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNSGKVVSKETLMLQLYP-DA 177

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 178 ELRESHTIDVLMGRLRKKLLAEHEGEVITTIRGQGYRFDAN 218


>gi|187778164|ref|ZP_02994637.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC
           15579]
 gi|187775092|gb|EDU38894.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 18/197 (9%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY       G+  +E F S++ +  +      D+S         GE   E+ +IIR
Sbjct: 21  LEKEGYKVYCTTKGLEGIEIFKSIDIQLIILDLMLPDIS---------GE---EVCKIIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL   N+ +  
Sbjct: 69  QSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSADNSTSNL 128

Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+   I+G+ D  
Sbjct: 129 IFDDGKLSIDYDKRVVKVNGKEVSITPNEFDILYALVSNKGKVLSREQLIDKIFGI-DFN 187

Query: 185 VEENVVESHISKLRKKL 201
             +  ++ HI  +RKK+
Sbjct: 188 GYDRTIDVHIKNIRKKI 204


>gi|125623751|ref|YP_001032234.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|8177554|gb|AAF73970.1| putative response regulator Rra [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492559|emb|CAL97502.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070520|gb|ADJ59920.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 230

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R +R     P+I ++   S    +   D G DD + KP    E+LARV A +RR +
Sbjct: 63  FEVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREE 122

Query: 121 VSN--NRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   RAE    R   +    R      +V  L RRE  +L  LM N G  V +  + S
Sbjct: 123 HGHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVS 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++G ++E  E NVV+ +I  LR K+  +     + + R LGY
Sbjct: 183 QVWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGY 224


>gi|54294190|ref|YP_126605.1| hypothetical protein lpl1254 [Legionella pneumophila str. Lens]
 gi|54297210|ref|YP_123579.1| hypothetical protein lpp1255 [Legionella pneumophila str. Paris]
 gi|148358833|ref|YP_001250040.1| DNA-binding response regulator [Legionella pneumophila str. Corby]
 gi|296106878|ref|YP_003618578.1| DNA-binding response regulator [Legionella pneumophila 2300/99
           Alcoy]
 gi|53750995|emb|CAH12406.1| hypothetical protein lpp1255 [Legionella pneumophila str. Paris]
 gi|53754022|emb|CAH15493.1| hypothetical protein lpl1254 [Legionella pneumophila str. Lens]
 gi|148280606|gb|ABQ54694.1| DNA-binding response regulator [Legionella pneumophila str. Corby]
 gi|295648779|gb|ADG24626.1| DNA-binding response regulator [Legionella pneumophila 2300/99
           Alcoy]
 gi|307610003|emb|CBW99535.1| hypothetical protein LPW_13061 [Legionella pneumophila 130b]
          Length = 225

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 14/158 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +  P+I ++   S++  +   DSG DD + KP    E+ AR+ A+ RR   S  RA++  
Sbjct: 71  NSTPVIILTARESIEDRVKGLDSGADDYLIKPFDLNELSARIRALVRR---SQGRADS-V 126

Query: 131 IRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           ++  +   DP      V   +  +PRRE  +L+ L+ N G+ +++ Q+  +IYG ++E V
Sbjct: 127 LQYKNITLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG-WEEDV 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + N +E HI  LRKKL        + + R +GY  + N
Sbjct: 186 DSNALEVHIHNLRKKLNANF----IRTIRGVGYMAEKN 219


>gi|332140234|ref|YP_004425972.1| response regulator [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550256|gb|AEA96974.1| response regulator [Alteromonas macleodii str. 'Deep ecotype']
          Length = 221

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I + ++ +P++ ++    +   +   D+G DD + KP    E+LAR+  + RRL  +
Sbjct: 63  LKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLGTA 122

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    T   + + +      +  E   LPRRE  +L+ L+ N G+ ++K Q+ + +Y  +
Sbjct: 123 SQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E V  N +E H+S LRKK+ +      + + R +GY I
Sbjct: 182 GEEVASNTIEVHVSHLRKKMPDNF----IKTIRGVGYCI 216


>gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 226

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               A    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEAAPVALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|160933446|ref|ZP_02080834.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
 gi|156867323|gb|EDO60695.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
          Length = 234

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 9/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VS 122
           IR  SQVP+I ++      + +  FD+  DD + KP     ++  + A+ RR +    V 
Sbjct: 78  IRKESQVPIIMLTALDDDASQMKGFDALADDYITKPFSMPLVVKHIEAVLRRAEQGAGVE 137

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N      + + +D     V+ E   L  RE  IL+ L+ N+G+   +  +  +I+G +D
Sbjct: 138 TNILRYKDLTLDTDSFTVLVKDESVSLTIREFEILKLLVENQGRVFTRESLLDSIWG-YD 196

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +E +V +HI    K +R KLG D +++ R  GY I+
Sbjct: 197 YFGDEKIVNTHI----KNIRKKLGVDYIETIRGAGYKIE 231


>gi|254445350|ref|ZP_05058826.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198259658|gb|EDY83966.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 221

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 91/165 (55%), Gaps = 8/165 (4%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L++ R+IRA S   +VP+I +S        +D F+SG DD V KP   +E++ RV+AI +
Sbjct: 56  LQVCRLIRADSSLKEVPIIFLSAKTEEGDRIDGFESGADDYVCKPFSPKELMLRVSAILK 115

Query: 118 RLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   +++    E   IR+  +    EV+ E   L   E R+L+ L+  RGK   +  +  
Sbjct: 116 RRGEADDAKILEVNGIRMDVEHHRVEVEAEAIELTATEFRLLKLLLEERGKVQTRETLLL 175

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  ++  +E   V++H+ +LR+KL N+  +  +++ R +GY +
Sbjct: 176 KVWN-YENDIETRTVDTHMRRLREKLGNEASW--LETVRGVGYRL 217


>gi|218248373|ref|YP_002373744.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060302|ref|YP_003138190.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218168851|gb|ACK67588.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590468|gb|ACV01355.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 231

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 21/220 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L++  YI  +  DG   EG + LE               I  +L+ K   V +L R +
Sbjct: 18  RTLIQHNYIVDWAQDGK--EGLDYLEI------GLSHYTLGIFDWLLPKLSGV-DLIRKV 68

Query: 68  RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           R H S +P++ ++   S +  +   D+G DD + KP    E+LAR+ A+ RR        
Sbjct: 69  RQHKSSLPILMLTAKDSEEDKVIGLDAGADDYLVKPFGMAELLARLRALQRRSPQINPQQ 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           LKV N   +     +F   +D E   +   L  +E ++LEY + +  + V + Q+ S ++
Sbjct: 129 LKVGNLTLDYSTYTIFC--QDKEGDNQTIALTNKEFQLLEYFLHHPNQIVTRDQLLSQLW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               E +  NVV + I  LR+KL    G + +++   LGY
Sbjct: 187 EWESEPM-SNVVAAQIRLLRRKLAPYGGDNWIETIYGLGY 225


>gi|256380732|ref|YP_003104392.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255925035|gb|ACU40546.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 14/164 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   S    
Sbjct: 67  LRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGESEELL 126

Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E GP+R+  +     V GE   LP +E  +LEYL+ N G+ + + Q+   ++G  D
Sbjct: 127 PQVLEAGPVRMDVERHVVTVNGEEVALPLKEFDLLEYLLRNVGRVLTRGQLIDRVWG-AD 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              +   ++ H+    K+LR+K+  DP   +     R LGY  +
Sbjct: 186 YVGDTKTLDVHV----KRLRSKVEPDPATPRHLVTVRGLGYKFE 225


>gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 249

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 11/134 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFP 148
           G DD V KP    E++AR+ AI RR   +   A+ G + V     DP        G    
Sbjct: 114 GADDYVTKPFSLEELIARIRAILRR---AGGPADDGRLVVADLTLDPAAHEVTRGGVPVS 170

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L   E ++L YLMAN G+ V+K QI   ++  +D   + ++VES+IS LR+KL +  G  
Sbjct: 171 LSPTEFKLLHYLMANVGRVVSKAQILDHVWA-YDFGGDLSIVESYISYLRRKLDSGPGHG 229

Query: 209 P--VDSKRFLGYSI 220
           P  + + R +GY++
Sbjct: 230 PKLIHTVRGIGYAL 243


>gi|116512538|ref|YP_811445.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108192|gb|ABJ73332.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
 gi|300070367|gb|ADJ59767.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 225

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 5/149 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129
            P++ ++   SL   +  FD G DD + KP +  E+ AR+ A+ +R   L+ SN  +  G
Sbjct: 76  TPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRTGKLEDSNGLS-YG 134

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            IR+    +   V  +   L  +E  ++ YLM N+   + K QIF  I+G +D      V
Sbjct: 135 NIRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRIWG-YDSDTTVTV 193

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VE ++SK+RKKL++    + + + R +GY
Sbjct: 194 VEVYMSKIRKKLKDTEFVNNLSTLRNVGY 222


>gi|313674517|ref|YP_004052513.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
 gi|312941215|gb|ADR20405.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
          Length = 225

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 4/133 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYR-RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP H  E+ +R+ AIYR R + S+N  E   I + +D ++ +V  +   L
Sbjct: 91  LDAGADDYLGKPFHLLELASRLKAIYRTRKQESSNVIELDKILIDTDKKEVKVGNQFLDL 150

Query: 150 PRRERRILEYLMANRGKRV-AKTQIFSAIYGLF-DEAVEENVVESHISKLRKKLRNKLGF 207
            ++E  +L +  AN  KRV  K  I   ++G F D++   + V  HI  LRKK++   G 
Sbjct: 151 TKKEYEMLLFF-ANNAKRVLTKQNIAEHLWGDFIDQSDSFDFVYQHIKNLRKKIQKATGS 209

Query: 208 DPVDSKRFLGYSI 220
           D +++   +GY +
Sbjct: 210 DLLETVYGVGYKL 222


>gi|217978668|ref|YP_002362815.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217504044|gb|ACK51453.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 233

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 2/142 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R+     + P++ +S + +++  +     G DD + KP H  E++AR+ AI RR K  
Sbjct: 63  LRRLRVGKVKTPILILSGFAAIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSKGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +   T  + V  D +  EV G    L  +E ++LE L   +G  + K    + +YG  
Sbjct: 123 AQSVIATSDLIVNLDQKTVEVDGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGM 182

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           DE  E  +++  I KLRKKL N
Sbjct: 183 DEP-ELKIIDVFICKLRKKLAN 203


>gi|28210358|ref|NP_781302.1| subtilin biosynthesis regulatory protein spaR [Clostridium tetani
           E88]
 gi|28202795|gb|AAO35239.1| subtilin biosynthesis regulatory protein spaR [Clostridium tetani
           E88]
          Length = 220

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L + IR     P+I ++     Q  +     G DD ++KP    E+ ARVAA  RR  + 
Sbjct: 62  LCKEIRNLVDCPIIFLTAKTMEQDIVMGLSLGGDDYISKPFGISELRARVAAHLRREHRE 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N      ++     ++     ++ P  + E  I EYL  N G+  +K +I+  +YG +
Sbjct: 122 KQNAFSISNVKFNITSKEAYYNEKLIPFTKSEYNICEYLAMNHGQVFSKDRIYEKVYGTY 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             +    +VE HI  +R KL+N +G +P+++   +GY
Sbjct: 182 GNSDTTAIVE-HIKNIRNKLKN-MGINPIETVWGIGY 216


>gi|294341402|emb|CAZ89819.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As]
          Length = 239

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  + VP++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR +
Sbjct: 61  EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + GP+     GR   + G V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ E V  N +E ++ +LRKK+  ++G   + + R LGY ++
Sbjct: 180 VWGEEVSTNAIEVYVHRLRKKI--EVGPVRIATVRGLGYCLE 219


>gi|268610405|ref|ZP_06144132.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 224

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 5/219 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M  L++D   +++  +    + G   +GF +  EF   L+ +  E V          G  
Sbjct: 1   MIYLLEDDGGIRNFVLYALNNSGFEAKGFETPSEFYSALEGALPELVLLDRMLPEEDGMT 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           VL+  R     +++P+I ++   S    ++  D G DD + KP    E+++R+ A+ RR 
Sbjct: 61  VLKKLRNSPETAELPVIMLTALDSEADKVEGLDGGADDYIAKPFGTMELISRIKALLRR- 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+ +   G + ++    +    GE   L  +E  +L YLM ++G  +++ ++   I+G
Sbjct: 120 SGSSEKLTAGELCIYPVKHEVFAAGEPVVLTLKEYDMLLYLMRHKGTVISRDELLKKIWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +D + E   V+ HI  LR KL   +  D + + R +GY
Sbjct: 180 -YDFSGESRTVDVHIRTLRSKL--GVCGDVIQTIRGVGY 215


>gi|150021690|ref|YP_001307044.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149794211|gb|ABR31659.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 222

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 8/195 (4%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86
           E  N+ E  + L S  R D+  ++  L   G    ELP I   + ++ +I +S   +   
Sbjct: 30  EAENNFEMRKKL-SKERYDLVLLDIML-PDGLSTDELPEIKVLYPKLGIIIVSAKDNDSD 87

Query: 87  TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV 146
            +   + G DD V KP + RE++AR+ A +RR+       + G +++F D    ++  ++
Sbjct: 88  KIYGLEIGADDYVTKPFNPREVVARIKAFFRRISGEREVIKFGQLQIFCDDYLVKLNDKI 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
                +E  IL  L  N     ++ +I   ++   DE + + VV+ HIS     +RNKLG
Sbjct: 148 IDFTAKEFEILCLLAKNPNVVFSRERILDIVWK--DEFISDRVVDVHIS----NIRNKLG 201

Query: 207 FDPVDSKRFLGYSID 221
            D + + R +GY  +
Sbjct: 202 KDSIITVRGVGYKFN 216


>gi|115375150|ref|ZP_01462417.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|310823133|ref|YP_003955491.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115367801|gb|EAU66769.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309396205|gb|ADO73664.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 240

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 10/167 (5%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R++R AH + P + ++   S+   +   +SG DD + KP    E+ AR+ ++ RR 
Sbjct: 75  LTLLRMLREAHIRTPTLFLTAMGSIDDRVKGLESGGDDYLVKPFAFSELYARICSLGRRP 134

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + + +       + +    R     G+   L   E R+LEYL+ + G+ V +T +   +
Sbjct: 135 PLQDVQTVFTLADLEMDLIKRTVTRSGKTLDLQPTEFRLLEYLLRHAGRAVTRTMLLEHV 194

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           +   FD   + N+VE+HIS+LR KL    GF P  + + R +GY ID
Sbjct: 195 WNFHFDP--KTNIVETHISRLRAKLDR--GFTPELIHTVRGVGYKID 237


>gi|160892783|ref|ZP_02073573.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
 gi|156865824|gb|EDO59255.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
          Length = 233

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 76/145 (52%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + IR  SQVP+I ++     +  L  F+ G+D+ + KP   + ++ARV AI RR   
Sbjct: 65  ETCKEIRKFSQVPIIMLTAKSDERDELLGFELGIDEYITKPFSPKILVARVEAILRRTSD 124

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G I +        + GE   L  +E  +L Y M N+G  +++ +I + ++ 
Sbjct: 125 VPADSVISAGGITMDLAAHIVTIDGEPIELSYKEFELLNYFMVNKGVALSREKILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL++K
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLKDK 208


>gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 231

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 19/228 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEK 59
           ++IDD     D +I    DD ++ EGF++    + E+ L+    E V  +   ++   E 
Sbjct: 7   LIIDD-----DPHIREILDDYLNFEGFDAFLAEDTEKGLKILQEEKVDILILDIMLPDED 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E  + IR    +P+I +S        +   + G DD + KP   RE++AR+ A+ RR 
Sbjct: 62  GWEFCQKIRPEYDLPIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLRRY 121

Query: 120 KVSNNRAETGPIRVFSD---GRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              N  AE   I  + +    R+  +   QGE   L  +E  +L +L  N  K   + ++
Sbjct: 122 ---NKAAENAKIIKYGELIINREQHLVSFQGEKIELTPKEFSLLWHLAENPKKVFRRERL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             A++G +D   +   V++HI  LRKKL +K   + V++   +GY  D
Sbjct: 179 LKAVWG-YDYYGDVRTVDTHIKSLRKKLGDKAA-EAVETVWGVGYKFD 224


>gi|310828577|ref|YP_003960934.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740311|gb|ADO37971.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 229

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 17/229 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DDRAL +   ++L  D   +L  F+  E  E L  +  + +        G G   
Sbjct: 8   ILIVEDDRALNQGLVLSLKNDSYTTLSAFSIKEAREKLTDNTFDLIVLDVNLPDGNG--- 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LEL + IR  S VP+I ++        +   ++G DD + KP     + AR+AA+ RR  
Sbjct: 65  LELCQEIRRRSAVPIIFLTANDMEMDVVIGLENGGDDYITKPFSLAILRARIAALLRRSQ 124

Query: 120 KVSNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           K   NR +           VF  G D         L + E+++L+ L+ANRG  V +  +
Sbjct: 125 KERQNRIKIDAFTFDFDQMVFLKGEDE------LTLSKTEQKLLKLLLANRGTTVTRDLL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              ++G   + V+EN +   I +LR KL +     PV  +   G    W
Sbjct: 179 LEKVWGDSMDFVDENALSVTIRRLRSKLEDN-SSKPVYIQTVYGLGYTW 226


>gi|296170645|ref|ZP_06852220.1| two component system response regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894634|gb|EFG74368.1| two component system response regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 236

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 34  FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS 93
            EE L+   R D+  ++  L G+      L  +IR   +V ++ I+    L+  L   D 
Sbjct: 52  LEEALEG-LRPDLVVLDVMLPGR--DGFALIDVIRDWGEVGIVLITARDGLEDRLRGLDG 108

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           G DD V KP    E+++RV A+ RR        + G + + +D       G    L   E
Sbjct: 109 GADDYVVKPFELAELVSRVGAVLRRRGRLPQVIQFGDLMLDTDAGVAARSGRRLDLTATE 168

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            R+L +L+  RG+ V+  QI +A++G   +A + N+V+ ++S LR+KL    G   + + 
Sbjct: 169 LRLLSFLVEQRGRIVSAGQILNAVWGY--DAYDPNLVQVYVSGLRRKLEAH-GPRILHTV 225

Query: 214 RFLGYSI 220
           R +GY +
Sbjct: 226 RGIGYRL 232


>gi|237751683|ref|ZP_04582163.1| response regulator ompR [Helicobacter bilis ATCC 43879]
 gi|229373049|gb|EEO23440.1| response regulator ompR [Helicobacter bilis ATCC 43879]
          Length = 220

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 10/182 (5%)

Query: 28  GFNSLEFEE---WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           GF +L   +    L+  A++D+ A+   L+       EL   IR+H+Q+P+I  S    +
Sbjct: 25  GFETLCLSDVSMILEKIAQDDIDAVILELLDHEIDGFELCGKIRSHTQIPIIISSKLTHI 84

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG 144
              +  F+ G+DD + KP    E++AR+ A+ RR  +   +   G + + +  R  ++  
Sbjct: 85  SDKIRAFELGIDDYMTKPYEAVELIARIKALLRR--IEPRKRVFGALNIDAKRRTIKLYN 142

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           E   L   E  IL +L+ NR + V++ +I   I  + D+    + +++HI    + LRNK
Sbjct: 143 EDIELTNTEFDILLFLVDNRLQPVSRERIAHTINAIHDDTGLRS-IDTHI----RNLRNK 197

Query: 205 LG 206
           LG
Sbjct: 198 LG 199


>gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 221

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 2/131 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +++P+I ++    L+  +    SG DD + KP H  E+LAR+ A+ RR K  + +   G 
Sbjct: 74  TELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVLRR-KGYSEKILYGN 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +    R+ +V GE   L R E  +L+ L+ N G  ++K ++   ++G  +E    NVV
Sbjct: 133 IEMNLSSREVKVNGEPVELSRTEFDLLKVLLTNAGIVMSKDRLLELVWG-TEEWGNPNVV 191

Query: 191 ESHISKLRKKL 201
           E +I+ LRKKL
Sbjct: 192 EVYINYLRKKL 202


>gi|75675380|ref|YP_317801.1| two component transcriptional regulatory protein [Nitrobacter
           winogradskyi Nb-255]
 gi|74420250|gb|ABA04449.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 223

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  R    +P++ ++        +  FD+G DD V KP H  EILAR+ A+ 
Sbjct: 59  GISVLEAWR--RGGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARMRALL 116

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    +++    GP+ + +      V G    +   E R+L YLM + G+ V++T++  
Sbjct: 117 RRSTGHAHSELTCGPVTLDTRTGRVSVGGNPVKMTSHEYRLLAYLMHHIGRVVSRTELVE 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   FD   + N +E  + ++RK    KL  D + + R LGY
Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRK----KLDVDIIQTVRGLGY 214


>gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT]
 gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. GT]
          Length = 230

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R+IRA S VP++ ++   S    ++  ++G DD ++KP   +E+LAR+ A+ RR +
Sbjct: 63  FELCRLIRAESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRRSQ 122

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + N+ AE       G + +F +       G       +E  +  +L+ NR +  ++ Q+ 
Sbjct: 123 MQNSPAEPAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G +D       V+ HIS LR+K+
Sbjct: 183 EKVWG-YDYPGGTRTVDVHISWLRQKI 208


>gi|154499728|ref|ZP_02037766.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
           29799]
 gi|150271326|gb|EDM98583.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 26/221 (11%)

Query: 8   RALVKD-GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65
           RA ++D GY      DG  LEG N  +F E        D+  ++  L    G  V E   
Sbjct: 19  RAFLEDAGYTVFVAGDG--LEGVN--KFHE-----KNPDLVLLDLMLPKMNGFTVCE--- 66

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           I+R  S+ P+I ++      + L  FD+  DD + KP     ++  + A+ RR++ +   
Sbjct: 67  ILRKESRTPIIMLTALDDDDSQLKGFDALADDYITKPFSMPVVMKHIEAVLRRIEPA--A 124

Query: 126 AETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +E   IR     + +D    +V G    L  RE  IL++L+ N+G+   +  +   I+  
Sbjct: 125 SEPSVIRYKAHVLDADSFSVQVNGVPVSLTTREFEILKFLLENQGRVFTRDNLLDRIWD- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E ++ +HI  +RK    KLG D +++ R +GY I+
Sbjct: 184 YDYVGDEKIINTHIKNIRK----KLGVDYIETIRGVGYKIE 220


>gi|170738424|ref|YP_001767079.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168192698|gb|ACA14645.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 225

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132
           P++ ++    +   +   D G DD + KP   RE+ ARV A+ RR    ++N    G + 
Sbjct: 74  PVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHSGHADNAIAVGNLV 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    R   V G+   L RRE  ++E L A  G+   K ++   +   F+E   EN VE 
Sbjct: 134 LDRAARSARVAGQPLDLTRREWTLMEILAARPGRIFGKAELLERVTS-FEEDASENAVEQ 192

Query: 193 HISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
            +++LR+KL  + G +P + + R LGY + W
Sbjct: 193 IVARLRRKL-AQAGAEPEIRTLRGLGYQVVW 222


>gi|295704202|ref|YP_003597277.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801861|gb|ADF38927.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 224

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I+ +  +P++ ++        L  FD G DD V KP   +E++ARV A+ RR +V
Sbjct: 62  ELTKEIKEYFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYRV 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +NN    G I++     +         LP +E  +L  L+++ GK   + Q+   I+G 
Sbjct: 122 EANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGY 218
           +D   EE  V+ HI +LR++L +   +G + + + R LGY
Sbjct: 181 YDYEGEERTVDVHIKRLRERLNHMKNVGME-IKTIRGLGY 219


>gi|157165503|ref|YP_001467191.1| response regulator receiver domain-containing protein
           [Campylobacter concisus 13826]
 gi|112801411|gb|EAT98755.1| transcriptional activator protein CopR [Campylobacter concisus
           13826]
          Length = 219

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 9/161 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R   A    P++ ++    +   +   D+G DD + KP   +E+LARV  + RR   S
Sbjct: 63  LQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRR--NS 120

Query: 123 NNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N A     G +++    +  E  GE   L  +E  ILE+LM N+G+ + + QI   ++ 
Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD     NV++  I  +RKKL      + + +KR LGY +
Sbjct: 181 -FDYTGGSNVIDVLIKNIRKKLGE---CEAIQTKRGLGYVV 217


>gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
 gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
          Length = 234

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + +
Sbjct: 63  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQGA 122

Query: 123 NNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +           G I +        V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 123 VEASGAVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP     + + R LGY ID
Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPQYLTTVRGLGYKID 230


>gi|238650537|ref|YP_002916389.1| transcriptional activator protein czcR [Rickettsia peacockii str.
           Rustic]
 gi|238624635|gb|ACR47341.1| transcriptional activator protein czcR [Rickettsia peacockii str.
           Rustic]
          Length = 237

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  + P++ +S        +  F SG DD + KP    E++AR+ AI RR   S
Sbjct: 63  LLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A +      + +  D R  EV G+   L  +E  ILE L+  RG  + K    + +Y
Sbjct: 120 KGHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLVLRRGTILTKEMFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              DE  E  +++  I KLRKKL +  G  D +D+    GY +
Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221


>gi|27378232|ref|NP_769761.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27351379|dbj|BAC48386.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 224

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 8/130 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD+G DD V KP H  E+LAR+ A+ RR    + +    GP+ + +      V G    +
Sbjct: 91  FDAGADDYVAKPFHLEEVLARIRALLRRSTGHAQSELSCGPVTLDTRTGRVSVSGNPVKM 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + ++RK    KL  D
Sbjct: 151 TSHEYRLLAYLMHHSGRVVSRTELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLDVD 204

Query: 209 PVDSKRFLGY 218
            + + R LGY
Sbjct: 205 IIQTVRGLGY 214


>gi|320546797|ref|ZP_08041105.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320448543|gb|EFW89278.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 224

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K +NN      +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNNNTLSYHEL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              +      V GE   L  +E  +L Y + N+   + K+QIF  I+G FD     +VVE
Sbjct: 133 TADTSTNTTTVNGEKVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+     D + + R +GY
Sbjct: 192 VYVSKIRKKLKGTSFADSLQTLRSVGY 218


>gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 234

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 19/173 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + +
Sbjct: 63  LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQGA 122

Query: 123 NNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +           G I +        V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 123 VEASGVVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              I+G  D   +   ++ H+    K++R+K+  DP   +     R LGY ID
Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPRYLTTVRGLGYKID 230


>gi|307299746|ref|ZP_07579539.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914612|gb|EFN45005.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 229

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 30/226 (13%)

Query: 9   ALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRI 66
           AL ++G+   L G    +LE   S +F          D++ ++  L  G G    EL + 
Sbjct: 20  ALTQEGWATTLAGSVSYALEMLESGDF----------DLALLDVMLPDGNG---FELCKK 66

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----S 122
           IR  S++P+I ++        +   +SG DD V KP   RE+++R+ A  RR++      
Sbjct: 67  IRERSEMPIIFLTARDEEVNIVMGLESGADDYVTKPFRLRELISRIKANARRIQKRSVEE 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               ++GP+ + +        G+   L   E +IL  LM N G  + + ++   ++ +  
Sbjct: 127 GGSLKSGPLELNTSKLRAYRSGKEIILTPTEFKILRTLMENEGIVLGRDRLLQKVWDVDG 186

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDWN 223
           E +++N +  HI KLR+K+      DP     +++ R LGY   WN
Sbjct: 187 EFIDDNTLSVHIRKLREKVEE----DPSKPKLIETLRGLGYR--WN 226


>gi|302335659|ref|YP_003800866.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301319499|gb|ADK67986.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 228

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSN 123
           R+ R ++ +P++ ++   S    ++  D+G DD + KP    E+LAR+ A+ RR   V  
Sbjct: 65  RLRRENNSIPVLMLTARTSTSDKVEGLDAGADDYMTKPFESPELLARLRALTRRQGDVVI 124

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +      + +     D    G    L  +E  +L  LM++  + ++K  + + ++G   E
Sbjct: 125 DEVSFADLTLDLATHDLSCDGHTVHLSGKEFEVLRMLMSSTARVISKQDLLTRVWGTDGE 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A  EN VE++IS LRKK+ +      + + R LGY ++
Sbjct: 185 A-SENSVEAYISFLRKKISHVHSTVQITTLRMLGYRLE 221


>gi|24376120|ref|NP_720163.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24351154|gb|AAN57607.1|AE015896_5 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 231

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +     P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR   S  
Sbjct: 65  RIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAG 121

Query: 125 RAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +A      GP  + +   +   +GE+  L   E ++ E  M ++G+  +KT +   IY  
Sbjct: 122 KASPIITNGPFSLNTSSLEVRKEGELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  ++ NV+E  I +LRKKL     ++ +++ R  GY +
Sbjct: 182 -DFDLDSNVIEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 228

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ R +R  S VP+I ++    +   +   DSG DD + K     E+LAR+  I +R  
Sbjct: 62  IEVCRRVRKESDVPIIMLTAKDDVSDKVMGLDSGADDYMTKSFAIEELLARIRVILKRKS 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S+     G + +  D      +G+   L ++E  +L+YLM N+G  +++ +I   +
Sbjct: 122 KKEGSSAVIAAGRLVLLRDEHRVTFEGKEISLSKKEFELLKYLMENKGIVLSREKILDHV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G +D   + NV + +I  LR K+  K     + + R +GY
Sbjct: 182 WG-YDYYGDTNVTDVYIKYLRNKIDQKFDVRFIHTVRGVGY 221


>gi|302875761|ref|YP_003844394.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689195|ref|ZP_07631641.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578618|gb|ADL52630.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 224

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 15/213 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR- 68
           L K+GY A+  +DG           E+ L+   +E V  + + ++       EL + +R 
Sbjct: 21  LTKNGYKAISAEDG-----------EKALEILEKEYVDLVISDIMMPNMDGFELTKALRE 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A+  +P++ I+   +       F  G DD + KP+   E++ RV A+ RR ++ N R +T
Sbjct: 70  ANFNLPILMITAKETFADKQKGFLVGTDDYMVKPVDVNEMVLRVGALLRRAQIINERKQT 129

Query: 129 GPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
               V   D       GE   LP++E  +L  L++       + Q+   I+G+ D   E 
Sbjct: 130 VGNSVLEYDSLTVYQNGEAIVLPQKEFYLLYKLVSFPNHIFTRQQLMDEIWGM-DSDTEA 188

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V+ HI++LR + +    F+ + + R LGY +
Sbjct: 189 RTVDVHINRLRDRFKENQDFE-IMTVRGLGYKV 220


>gi|228476733|ref|ZP_04061399.1| DNA-binding response regulator, OmpR family [Streptococcus
           salivarius SK126]
 gi|228251604|gb|EEK10705.1| DNA-binding response regulator, OmpR family [Streptococcus
           salivarius SK126]
          Length = 219

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L+    IR     P++ I+        +     G DD + KP   +E+ ARVAA  RR  
Sbjct: 60  LQFCHEIRNQVDCPILFITAKTQEADIVQGLTYGADDYICKPFGVKELQARVAAHLRREH 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +++   G I+     ++  V+ ++  L + E  I ++L  N+G+  +K QI++ +YG
Sbjct: 120 RERHHKLLIGNIQFDLSAQELYVENQLLDLTKSEYSICQFLAENKGQVFSKVQIYTHLYG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D+     V E HI  +R KL++ +G +P+++   +GY   W+
Sbjct: 180 YEDKGSPTAVAE-HIKNIRAKLKD-VGQNPIETVWGIGYK--WH 219


>gi|225572449|ref|ZP_03781313.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040086|gb|EEG50332.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 77/145 (53%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  EVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTGQ 124

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N       G I V        V+G    L  +E  +L Y + N+G  +++ +I ++++ 
Sbjct: 125 TNKEDVLSLGGIVVDKAAHQVTVEGSPIELSFKEFELLSYFIENQGIALSREKILNSVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL  K
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGEK 208


>gi|254486555|ref|ZP_05099760.1| two component response regulator [Roseobacter sp. GAI101]
 gi|214043424|gb|EEB84062.1| two component response regulator [Roseobacter sp. GAI101]
          Length = 225

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 22/230 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIG-K 56
            +L +D   + D  +A   ++G S++    G ++L +  +       D++ ++  L G  
Sbjct: 3   ILLAEDDPKIADYIVAGLSENGHSVDHVSDGRDALSYCLYNDC----DMAILDRMLPGMD 58

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL+  R   +   +P++ ++    ++  ++   +G DD + KP H  E+ AR+ AI 
Sbjct: 59  GLSVLKALRA--SKKSLPVLFLTALGQVEDRVEGLAAGGDDYLTKPFHFSELTARIDAIV 116

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR   S   AE  P     D       R    QG +  L  +E  ILE LM N G+ V +
Sbjct: 117 RR--KSETTAE--PSLTVHDLTLDLLARTATRQGNLIELHNKEFSILEILMRNSGRIVTR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           TQ+   ++  F+      VVE+H+S+LR K+        + + R  GYS+
Sbjct: 173 TQLLERVWN-FNFEPNTTVVETHLSRLRAKIDKPFDTPLIHTIRNTGYSM 221


>gi|160936956|ref|ZP_02084320.1| hypothetical protein CLOBOL_01845 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440146|gb|EDP17893.1| hypothetical protein CLOBOL_01845 [Clostridium bolteae ATCC
           BAA-613]
          Length = 221

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 15/138 (10%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSN 123
            Q+P+I ++    L + +     G DD + KP    ++LARV A+ RR       L V N
Sbjct: 70  CQMPIIVVTALDDLSSKVQCLQVGADDYITKPFDSMDLLARVGAVLRRCRRRPMSLNVRN 129

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              +    RV  DG++ E+  + F L       L YL +N  K + + +I S ++G ++ 
Sbjct: 130 ISVDPDQHRVLKDGKEIELTPKEFDL-------LYYLCSNCDKVLTRKEILSDVWG-YNY 181

Query: 184 AVEENVVESHISKLRKKL 201
             E   V+ HI +LRKKL
Sbjct: 182 VGETRTVDIHIQRLRKKL 199


>gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX]
          Length = 241

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++IDD   ++D   A     G  +    S E    L  S R D+  ++  L    G  V 
Sbjct: 13  LVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSERPDLILLDVLLPDISGFDVC 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R+      VP+I ++   +   T+     G DD V KP     ++ARV A+ RR+K 
Sbjct: 73  R--RLRDEDDDVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRRVKR 130

Query: 122 SNNRAET--GPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N A++  G +RV     D +       G    L   E R+L Y+M N G+ + + Q+ 
Sbjct: 131 DPNSAQSSDGVLRVADLELDEKTWTVRRGGVPIDLSPTEFRLLAYMMHNAGRVLTRAQLL 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D A +  +VE+++S LR+KL +  G + + ++R +GY++
Sbjct: 191 ENVWG-WDYAGQSQIVETYVSYLRRKL-DPFGPNLIHTQRGVGYAL 234


>gi|25026981|ref|NP_737035.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259508536|ref|ZP_05751436.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492261|dbj|BAC17235.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259163886|gb|EEW48440.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 232

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 27  EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF+++   +    L   +R D+  +   L+  G    ++ + +R  S VP+I ++   S
Sbjct: 24  EGFDTIIAGDGPTALVEFSRNDIDIVLLDLMLPGMSGTDVCKELRLVSNVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRV 133
               +   + G DD V KP   RE++AR+ A+ RR   +   A          E G +R+
Sbjct: 84  EIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGDTEAEAAEDDTDDQILEGGRVRM 143

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D     V G+   +P +E  +LEYL+ N G+ + + Q+   I+G  D   +   ++ H
Sbjct: 144 DVDSHTVTVDGKAVNMPLKEFDLLEYLLRNAGRVLTRGQLIDRIWG-ADYVGDTKTLDVH 202

Query: 194 ISKLRKKL 201
           + +LR K+
Sbjct: 203 VKRLRSKI 210


>gi|329961374|ref|ZP_08299497.1| putative response regulator ArlR [Bacteroides fluxus YIT 12057]
 gi|328531851|gb|EGF58674.1| putative response regulator ArlR [Bacteroides fluxus YIT 12057]
          Length = 225

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 8/167 (4%)

Query: 55  GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G G  +L EL R+ R+ S   ++ IS   SL   +D  + G DD + KP H  E+ ARV 
Sbjct: 57  GSGLDLLRELKRLHRSDS---VLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARVK 113

Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++ RR +   + + T G + ++ D R  EV G    L R+E  +L Y + N  + + K  
Sbjct: 114 SLIRRRQTQGDVSVTIGNLLLYPDKRQAEVNGAPLQLNRKEFDLLYYFVVNPDRVINKMS 173

Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  +++G   D+A   + + S +  LRKKL  KL    V+ K   G+
Sbjct: 174 LAESVWGDNIDQADSLDFIYSQVKNLRKKL--KLADATVELKAVYGF 218


>gi|325263497|ref|ZP_08130231.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
 gi|324031206|gb|EGB92487.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
          Length = 226

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR HS+VP+I ++     +  L  FD GVD+ ++KP   + ++ARV AI RR + 
Sbjct: 65  QVCREIREHSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRTQS 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +  + G I +       ++      L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 TESGDVMDAGGIMIDRAAHIVKIGERTIDLSYKEFELLSYFVENQGIALSREKILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL  K
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGEK 208


>gi|315612769|ref|ZP_07887680.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315314879|gb|EFU62920.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 218

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 105/219 (47%), Gaps = 6/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGISDYLTDCG--YETIEAADGQEALEKFSSHEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   +
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                    +V  +     + G+   +  +E  IL+YL+ N G+ + ++QI  A++   D
Sbjct: 122 GRVFSYKDTKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKATD 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|218508769|ref|ZP_03506647.1| probable two-component response regulator protein [Rhizobium etli
           Brasil 5]
          Length = 412

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 2/147 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ ++ S++P+I ++   SL   +   DSG DD + KP    E+ AR+ A+ RR +  
Sbjct: 63  LKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQDR 122

Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   T    +FS G R   V GE   L  RE  +LE L+   G  V+KT +  +++G F
Sbjct: 123 ASSEITVGDLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKLGTTVSKTALSESVFG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD 208
           D+  + + +E +I +  K+ R + G D
Sbjct: 182 DDEADPSAIEIYIHRAAKEAREQFGSD 208


>gi|197302214|ref|ZP_03167273.1| hypothetical protein RUMLAC_00941 [Ruminococcus lactaris ATCC
           29176]
 gi|197298645|gb|EDY33186.1| hypothetical protein RUMLAC_00941 [Ruminococcus lactaris ATCC
           29176]
          Length = 236

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 83  AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP++E  +L  L A+ G+   K Q+   ++G   EA ++
Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYATEA-DQ 201

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++ ++   F+ V + R +GY +
Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233


>gi|167746364|ref|ZP_02418491.1| hypothetical protein ANACAC_01073 [Anaerostipes caccae DSM 14662]
 gi|167654357|gb|EDR98486.1| hypothetical protein ANACAC_01073 [Anaerostipes caccae DSM 14662]
          Length = 227

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 82/159 (51%), Gaps = 1/159 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++    L+  L     G D+ + KP H   + AR+  + RR + 
Sbjct: 62  EICRSIRKISTVPVLVLTSRDQLKDELHALKLGADEYLTKPCHKDRLTARILNLLRRYED 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +  AE   +R+        + G+   LP  + +I+E L+ + G  V K+ +   ++G  
Sbjct: 122 RDRFAEIQGVRLDRQTFTVYMNGQSAVLPENQGKIMELLLLHAGDTVTKSMLSERLWG-T 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E ++EN ++ ++++L+K +R       ++++R +GY +
Sbjct: 181 TEYIDENALQVNMTRLKKTIRKLHIPYRIETRRGIGYCL 219


>gi|125623601|ref|YP_001032084.1| two-component system regulator llrF [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|4104695|gb|AAD02113.1| putative response regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492409|emb|CAL97351.1| two-component system regulator llrF [Lactococcus lactis subsp.
           cremoris MG1363]
          Length = 222

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 5/149 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129
            P++ ++   SL   +  FD G DD + KP +  E+ AR+ A+ +R   L+ SN  +  G
Sbjct: 73  TPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRTGKLEDSNGLS-YG 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            IR+    +   V  +   L  +E  ++ YLM N+   + K QIF  I+G +D      V
Sbjct: 132 NIRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRIWG-YDSDTTVTV 190

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VE ++SK+RKKL++    + + + R +GY
Sbjct: 191 VEVYMSKIRKKLKDTEFVNNLSTLRNVGY 219


>gi|330504485|ref|YP_004381354.1| DNA-binding response regulator [Pseudomonas mendocina NK-01]
 gi|328918771|gb|AEB59602.1| DNA-binding response regulator [Pseudomonas mendocina NK-01]
          Length = 218

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 27/224 (12%)

Query: 16  IALFGDDGVSLEGF-NSLEFE----EWLQSSAREDVSAIEAFLIGKGEKV---LELPRI- 66
           I L  DD    EG   +L+ E    +WLQ  A    SA+ A      E     L LPR+ 
Sbjct: 3   ILLVEDDQALGEGIRTALKPEGYTVDWLQDGA----SALHALSHESFELAILDLGLPRMD 58

Query: 67  ---IRAHSQ-----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              +  H Q     VP++ ++   +    +   D+G DD + KP    E+ AR+ A+ RR
Sbjct: 59  GLQVLKHLQAAANPVPVLVLTARDATSDRIAGLDAGADDYLIKPFDVAELKARLRALLRR 118

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E   IR+    +  E QG+   LPR+E  +L  L+   G+ + + ++  A+
Sbjct: 119 SFQRPQPALEYRGIRLDPASQVVEYQGQTINLPRKEFLLLHELLIQPGRVLTRDKLQQAL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           YG +DE VE N +E H+  LRKK   +L    + + R +GY +D
Sbjct: 179 YG-WDEEVESNALEVHVHHLRKKFFPEL----IRTVRGVGYLVD 217


>gi|319440749|ref|ZP_07989905.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 240

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 20/179 (11%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G    E+ R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+
Sbjct: 66  LMLPGMSGTEVCRQLRSTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARI 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANR 164
            A+ RR   + N  +     V S GR   D E     V GE   LP +E  +LEYL+ N 
Sbjct: 126 RAVLRRGGEAENAEDA--TSVISGGRVTMDIERHVVTVAGEEVALPLKEFDLLEYLLRNA 183

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGY 218
           G+ + + Q+   I+G  D   +   ++ H+    K+LR K+  DP       + R LGY
Sbjct: 184 GRVLTRAQLIDRIWG-SDYVGDTKTLDVHV----KRLRGKIEEDPSSPVQLLTVRGLGY 237


>gi|254695359|ref|ZP_05157187.1| DNA-binding response regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261215731|ref|ZP_05930012.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260917338|gb|EEX84199.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 225

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D  ++          +G  ++  + L+       SAR D+  ++  L  G+G   
Sbjct: 3   IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPDGQG--- 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119

Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y
Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F+  VE N +E H+S+LRK    KLG   +++ R +GY +
Sbjct: 180 S-FNTEVESNTMEVHVSRLRK----KLGHAIIETVRGIGYRL 216


>gi|126740175|ref|ZP_01755864.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126718630|gb|EBA15343.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 234

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 6/164 (3%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L L + +R A ++ P I ++    +   ++  ++G DD + KP    E+ ARVAA+ RR 
Sbjct: 70  LSLIKTLRGAGNRTPAIMLTAVSGVNDRIEGLEAGADDYLVKPFAFGELSARVAALARRP 129

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+    R   G + +          G+  PL  RE  +LE+L+  +G+   +T +  A+
Sbjct: 130 GLQQQETRLCVGDLEMDLVQHKVTRAGQEIPLLPREFTLLEHLLRRKGRVQTRTMLLEAV 189

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + FD   + NVVE+HIS+LR K+      + +++ R  GY I
Sbjct: 190 WDITFDP--QTNVVETHISRLRAKVDRPFDNELIETVRGAGYRI 231


>gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
          Length = 224

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 8/130 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD+G DD V KP H  E+LAR+ A+ RR    + +    GP+ + +      V G    +
Sbjct: 91  FDAGADDYVAKPFHLEEVLARIRALLRRSAGHAQSELTCGPVTLDTRTGKVSVSGNPVKM 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V+++++   +Y   FD   + N +E  + ++RK    KL  D
Sbjct: 151 TSHEYRLLSYLMHHSGRVVSRSELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLDCD 204

Query: 209 PVDSKRFLGY 218
            + + R LGY
Sbjct: 205 VIQTVRGLGY 214


>gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 228

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 64  EVCRTLRARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 123

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +VS+   E G +R+  +     V G    LP +E  +LE  + N G+ + + Q+   +
Sbjct: 124 TEEVSDATLEVGRVRMDVERHVVTVDGSQVALPLKEFELLEMFLRNAGRVLTRGQLIDRV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  + G    + + R LGY  +
Sbjct: 184 WG-SDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGYKFE 227


>gi|121606845|ref|YP_984174.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595814|gb|ABM39253.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 224

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +RA  S +P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  LEVLKRLRARGSTLPVLILTAADSVEERVKGLDYGADDYMAKPFSLQELEARVRALVRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   ++  + GP+     GR   + G +  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGGGSSTIKHGPLVYDQAGRVATIDGHMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 E-WGEEVSNNAIEVYIHRLRKKIEK--GPVRIATVRGLGYCLE 220


>gi|254470046|ref|ZP_05083450.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211960357|gb|EEA95553.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 233

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 110/228 (48%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD + ++D      G++G  +      E      S    D+  ++  +   GE  +
Sbjct: 14  ILLIDDDSRIRDLLNRFLGENGFRVTVAKDAEEARRRLSGLEFDLLILDVMM--PGESGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL + +R    VP++ ++    ++  ++  ++GVDD V+KP   RE+L R++AI RR   
Sbjct: 72  ELAKDLRRSKAVPILMLTARSEIEDRIEGLEAGVDDYVSKPFEPRELLLRISAILRRGGP 131

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K+       GP +  ++  + +   E   L  RE++IL       G+ VA+T +  A 
Sbjct: 132 KPKMKLEVLSFGPFQYNAERGELKRNDEHVRLTDREKQILNTFAEKPGQTVARTDLVGA- 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
               D ++ E  ++  +++LR+K+    G +P  + + R +GY +  N
Sbjct: 191 ----DASLGERTIDVQVNRLRRKIEEDPG-NPLYLQTVRGIGYRLITN 233


>gi|27468859|ref|NP_765496.1| two component response regulator [Staphylococcus epidermidis ATCC
           12228]
 gi|81842588|sp|Q8CN92|HSSR_STAES RecName: Full=Heme response regulator hssR
 gi|27316407|gb|AAO05582.1|AE016750_187 two component response regulator [Staphylococcus epidermidis ATCC
           12228]
          Length = 224

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 8/197 (4%)

Query: 28  GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87
           G  SL+F E    +   D++ ++  +   G    EL + ++    +P+I ++   +L   
Sbjct: 34  GEASLDFLE----NKNVDIAIVDIMM--SGMDGFELCQTLKDDYHIPVIMLTARDALSDK 87

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEV 146
              F SG DD V KP   +E+L R+ A+ RR ++ ++N  + G + +     +  V  + 
Sbjct: 88  ERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQINADNELQLGNLILNQSYMEITVGSKT 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             LP +E ++L  L +N      +  I   I+G FD   ++  V+ HI +LR++L     
Sbjct: 148 MNLPNKEFQLLFLLASNPKHIFTRDDIIGKIWG-FDYEGDDRTVDVHIKRLRQRLSKLKS 206

Query: 207 FDPVDSKRFLGYSIDWN 223
              + + R  GY +D N
Sbjct: 207 SVSIQTVRGQGYRVDQN 223


>gi|109896972|ref|YP_660227.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109699253|gb|ABG39173.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 222

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 20/161 (12%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------- 119
           R    VP + ++   S+   +   DSG DD + KP   +E+LAR+  + RRL        
Sbjct: 68  RNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLGTATSSLI 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   +    +V +D  + E       L RRE  +L+ LM N G+  +K+Q+ + +Y 
Sbjct: 128 NIGNVVLDLATHQVTADNNEKE-------LSRREFMLLKALMENAGRIQSKSQLETKLYE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE +  N +E HI  LRKKL      D + + R +GYS+
Sbjct: 181 WGDE-LSSNAIEVHIHNLRKKLPK----DFIKTIRGVGYSV 216


>gi|312898518|ref|ZP_07757908.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620437|gb|EFQ04007.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 226

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 8/162 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           R IR  S VP+I I+        L  +D GVDD + KP   + ++A++ A+ RRL  +  
Sbjct: 65  REIRRTSTVPIIMITAKDEEIDQLFAYDLGVDDYITKPFSPKLLVAKMKALLRRLHGEGE 124

Query: 123 NNRAETGPIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N A+  P    +  R+     + G+   L   E ++L YLM N GK +++ QI + ++ 
Sbjct: 125 ENGADAVPAEGVAIDREAHQVLIDGKSTDLSPTEYKLLNYLMTNAGKALSRRQILNKVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   +   V++HI++LR KL N+  +  + + R  GY  D
Sbjct: 185 -YEYYGDLRTVDTHINRLRIKLGNRGSY--IQTVRGYGYRYD 223


>gi|300853961|ref|YP_003778945.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528]
 gi|300434076|gb|ADK13843.1| transcriptional regulatory protein [Clostridium ljungdahlii DSM
           13528]
          Length = 225

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 8/162 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I    Q+P+I +S    L T L+    G DD + KP ++ E++ R+ A+ RR+       
Sbjct: 67  INEQFQIPIICVSAKDDLNTKLELIRDGADDYITKPFNNEELIVRIGAVLRRMNKGMTID 126

Query: 127 ETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +T   R     + S+     +  E   L  +E  ILE L+++  K   K  IF +++   
Sbjct: 127 KTNIFRFKDLILDSENHIVTINDEPIELTAKEYSILELLISSPRKVFTKQNIFESVWS-E 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  ++E VV  H+S LR KL++  G + + +   +GY +  N
Sbjct: 186 EYIMDERVVTVHVSNLRNKLKH--GEEYIKTVWGIGYKMQDN 225


>gi|296137109|ref|YP_003644351.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295797231|gb|ADG32021.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 239

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 5/162 (3%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  + VP++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR +
Sbjct: 61  EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + GP+     GR   + G V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ E V  N +E ++ +LRKK+  ++G   + + R LGY ++
Sbjct: 180 VWGEEVSTNAIEVYVHRLRKKI--EVGPVRIATVRGLGYCLE 219


>gi|167747978|ref|ZP_02420105.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662]
 gi|317472474|ref|ZP_07931796.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167652628|gb|EDR96757.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662]
 gi|316900047|gb|EFV22039.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 225

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 25/236 (10%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M  +++D A +++  I      G    G+ S + F + L +    ++  ++  L   GE 
Sbjct: 1   MIYIVEDDANIRELVIYTLQSTGFDAGGYESGISFFKDLSAGKIPELVLLDIML--PGED 58

Query: 60  VLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            + + R IR++ +   +P+I ++   +    +   DSG DD + KP    E+++R+ A+ 
Sbjct: 59  GISILRKIRSNPETKHIPVIMMTAKGAEYDKVLGLDSGADDYITKPFGMMELVSRIKAVL 118

Query: 117 RRLK---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR+K           N     G  +V +DG   E       L  +E R+L  LM ++G  
Sbjct: 119 RRVKKEEPTEELSAGNLYIHVGKHKVLADGEKVE-------LTYKEFRLLCMLMESKGNV 171

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + + Q+ + I+G +D   E   V+ HI  LR+KL  + G   +++ R +GY I  N
Sbjct: 172 LTRDQLLTNIWG-YDFDGETRTVDVHIRTLRQKL-GECG-SMIETVRGIGYRIGGN 224


>gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 223

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 6/161 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP++ I+    +   +   D+G DD V KP    E+LAR+ +I RR++
Sbjct: 62  IEVCRRIRKTSNVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSILRRVQ 121

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +     + +  D  +   +     L R+E  +L+ L+ NR     + +I   ++
Sbjct: 122 PAQKSKQLILRELEIDVDAYEVIFENNKIELTRKEFDLLKLLVENRNLVCTRERILEEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           G FD  VE NVV+ +I  LR KL+ +    P +++ R +GY
Sbjct: 182 G-FDTEVETNVVDVYIRHLRTKLQTE--HTPYIETVRGVGY 219


>gi|268609476|ref|ZP_06143203.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 220

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 80/150 (53%), Gaps = 6/150 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R ++  P++ +S     +  L+  D G DD + KP     +LA++  I++R    +  +
Sbjct: 67  LRENADTPILIVSARTDKEDKLNGLDLGADDYIEKPYDIDILLAKIKGIFKRRYQRSMLS 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            +G +   ++ +  E+ G++  L  +E  +L  L+ N+GK + K  +FS ++G  D   E
Sbjct: 127 ASGVVLNLAN-KTAEIDGKLVQLSAKEFDLLALLIENQGKALKKEYLFSTVWG-SDSDSE 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
              +  HI++LR+    KLG DP +++R L
Sbjct: 185 LQTLHVHINRLRQ----KLGDDPKNARRLL 210


>gi|188584441|ref|YP_001927886.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179347939|gb|ACB83351.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 234

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R IRA  +   +P+I ++        +    +G DD V KP    E+LARV A+ R
Sbjct: 63  IELCRRIRARRETERLPVIMLTARGEEADRVRGLSTGADDYVVKPFSVPELLARVRALLR 122

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K ++  +    G I +         QG    L   E ++LEYLM + G+  ++ Q+  
Sbjct: 123 RAKPAHVADLLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS D
Sbjct: 183 GVWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFD 227


>gi|294791476|ref|ZP_06756633.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
 gi|294457947|gb|EFG26301.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
          Length = 249

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +   + P++ ++     Q  +     G DD V KP    E++AR+ AI RR K    
Sbjct: 71  RIRQQGMEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTK---E 127

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +AE  PI       +  D  D    G +  L   E ++L YLM N G+ ++K QI   ++
Sbjct: 128 QAEDDPIIRVADLEINEDSHDVTRHGMLIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP----------VDSKRFLGYSI 220
             +D   +  +VES+IS LRKK+   +  D           + +KR +GY I
Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKIDGVVYTDDEGNEQKVAPIIQTKRGMGYMI 238


>gi|293375811|ref|ZP_06622081.1| putative subtilin biosynthesis regulatory protein SpaR
           [Turicibacter sanguinis PC909]
 gi|325840818|ref|ZP_08167182.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp.
           HGF1]
 gi|292645588|gb|EFF63628.1| putative subtilin biosynthesis regulatory protein SpaR
           [Turicibacter sanguinis PC909]
 gi|325490188|gb|EGC92525.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp.
           HGF1]
          Length = 226

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V+ DD  +++  Y AL  +  +  +  NS  FE   Q     D+  ++  +   G+  
Sbjct: 5   ILVVDDDLEILEMLYDALNDEGYLVYKASNS--FEARSQLKVNPDLMILDVMM--PGQDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  + IR+    P+I ++   S    +  F  G DD + KP   RE+ ARVAA  RR +
Sbjct: 61  FEFCKEIRSVVSCPIIFLTAKVSESDLIQGFAIGGDDYLTKPFSLRELRARVAAHLRRNE 120

Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++R ++  I    ++    R      E  PL +RE  I+E L  N+ +  +K QI+  
Sbjct: 121 RQSSREQSFLIFQHLKINLQSRTVLYFDECVPLTKREYEIVELLALNKNQVFSKEQIYEL 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           ++GL  E     V E H+ K+R K +  +  F+ + +   +GY  D
Sbjct: 181 VWGLDAEGDCATVAE-HVKKVRSKFQTIQTDFNYLKTVWGVGYKWD 225


>gi|307727553|ref|YP_003910766.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307588078|gb|ADN61475.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 231

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 6/150 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIR 132
           P++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR       RA+ G + 
Sbjct: 82  PVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRGHGQEATRAQCGTLV 141

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
             S  R   + GE   L  RER +LE L+   G+ + K  +   I+GL DE+V  + +E 
Sbjct: 142 YDSVDRSFTLDGEPLALTPRERSVLEVLILRNGRAINKETLSEKIFGL-DESVNADAIEI 200

Query: 193 HISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++ +LRKKL R+ +G   + + R LGY ++
Sbjct: 201 YVHRLRKKLERSSVG---IVTLRGLGYLLE 227


>gi|270263020|ref|ZP_06191290.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042708|gb|EFA15802.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 220

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 11/207 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G++  GFN   F + L   +  + +  +A ++      L
Sbjct: 3   ILLIEDDKLIGDGIKA-----GLTKLGFNLDWFTDGLVGKSALESAPYDAVILDLSLPGL 57

Query: 62  ELPRIIRAHSQ----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +   ++R   Q    VP++ ++   +L+  +    SG DD + KP    E+ AR+ A+ R
Sbjct: 58  DGLDLLRQWRQAGHDVPVLILTARDALEQRVSGLQSGADDYLCKPFALTEVAARLQALIR 117

Query: 118 RLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R       +   G +   S  R     GE   L  RE  +LE  + N+G+ +A++ I   
Sbjct: 118 RRHGQLMPQLVHGNLVFDSATRSVNCNGEPVTLTPRELAVLELFLHNKGRVLARSLIQEK 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           +Y  +D+ V  N VE HI  LR+KL N
Sbjct: 178 LYN-WDDEVSSNAVEVHIHHLRRKLGN 203


>gi|209524683|ref|ZP_03273230.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209494827|gb|EDZ95135.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 227

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 6/147 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+   +R+  ++ P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR 
Sbjct: 60  LEICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRP 119

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               + V++NR E G ++   + +          L  +E ++LEYLM + G+ +  T+I 
Sbjct: 120 PILDVAVTSNRLEFGDLQFDCETQLAYRGQRAIELSEKESQLLEYLMRHPGQLLTHTEIH 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G  D+    NV+ + I  LR+K+
Sbjct: 180 QHLWGETDKKPSSNVLAAQIRLLRRKI 206


>gi|160892089|ref|ZP_02073092.1| hypothetical protein BACUNI_04552 [Bacteroides uniformis ATCC 8492]
 gi|317480521|ref|ZP_07939613.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
 gi|156858567|gb|EDO51998.1| hypothetical protein BACUNI_04552 [Bacteroides uniformis ATCC 8492]
 gi|316903313|gb|EFV25175.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
          Length = 225

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 6/152 (3%)

Query: 55  GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G G  +L EL ++ R+ S   ++ IS   SL   +D  + G DD + KP H  E+ ARV 
Sbjct: 57  GSGLDLLRELKQLHRSDS---VLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARVK 113

Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++ RR +   +   T G + ++ D R  E+ G+   L R+E  +L Y + N G+ + K  
Sbjct: 114 SLIRRRQAKGDVTVTLGNLLLYPDKRQVEINGKPLQLNRKEFDLLYYFVVNPGRVINKMS 173

Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
           +  +++G   D+A   + + S +  LRKKL+ 
Sbjct: 174 LAESVWGDNIDQADSLDFIYSQVKNLRKKLKQ 205


>gi|284036763|ref|YP_003386693.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816056|gb|ADB37894.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 228

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R IRA H  +P+I ++    ++  ++  + G DD + KP   RE+ ARVA  +RR  
Sbjct: 62  EICRNIRADHPTLPIIMLTAMGEIEDKIEGLECGADDYIVKPFDLRELSARVATCFRRSD 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           L +S+   E   +   +     +V         L  +E  +LEYLM ++G+ V+K  +  
Sbjct: 122 LLISSTGEEMLQVADLTLNVTSKVVMRDNTFIELTAKEFALLEYLMRHQGRVVSKIDLAE 181

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   FD     NVVE +I+ LRKK+  +     + ++  LGY++
Sbjct: 182 KVWNFNFDPGT--NVVEVYINYLRKKIDKEFDVKLIHTRPGLGYTL 225


>gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 226

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 14/174 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+   E+ R +R  S VP+I ++   +    +   + G DD V KP   RE++ARV A+ 
Sbjct: 57  GQSGTEVCRQLRQRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116

Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR     ++ ++  + GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q
Sbjct: 117 RRQGEPEELISSTVQAGPVRMDIERHVVSVGGEQVLLPLKEFELLEMLLRNSGRVLTRGQ 176

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
           +   ++G  D   +   ++ H+    K+LR K+  DP   +     R LGY  +
Sbjct: 177 LIDRVWG-SDYVGDTKTLDVHV----KRLRGKIEPDPSAPRYLVTVRGLGYKFE 225


>gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 230

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 18/200 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY     +DG+   G              R   S +   ++  G    EL R+IRA
Sbjct: 23  LAKEGYQLECAEDGLKALGMYR-----------RFKPSLVILDVMLPGMDGFELCRLIRA 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127
            S VP++ ++   S    ++  + G DD ++KP   +E+LAR+ A+ RR ++ N++ E  
Sbjct: 72  ESSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRSQMQNSQPEPV 131

Query: 128 ----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  + +F +       GE      +E  +L +++ NR +  ++ Q+   ++G +D 
Sbjct: 132 SGLKIDNLEIFFERHLVMRDGEALDFSPKEFDLLSFMVQNRCRVFSREQLLEKVWG-YDY 190

Query: 184 AVEENVVESHISKLRKKLRN 203
                 V+ HIS LR+K+  
Sbjct: 191 PGGTRTVDVHISWLRQKIET 210


>gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 224

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 8/130 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD+G DD V KP H  E+LAR+ A+ RR    + +    GP+ + +      V G    +
Sbjct: 91  FDAGADDYVAKPFHLEEVLARIRALLRRSAGHAQSELTCGPVTLDTRTGKVSVSGNPVKM 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V+++++   +Y   FD   + N +E  + ++RK    KL  D
Sbjct: 151 TSHEYRLLSYLMHHSGRVVSRSELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLDCD 204

Query: 209 PVDSKRFLGY 218
            + + R LGY
Sbjct: 205 VIQTVRGLGY 214


>gi|309779544|ref|ZP_07674305.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|308921785|gb|EFP67421.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 225

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 14/203 (6%)

Query: 28  GFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           G+N+      ++ ++W+ ++  E +        G+G   LE  R   AHS VP+I  S  
Sbjct: 25  GYNATWVRRLVDAQKWITTNTFEAIVLDLGLPDGEGHTFLEELRA--AHSDVPVIIASAR 82

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140
            +L   L   DSG DD + KP    E++AR+ A+ RR    S N+   G + V    +  
Sbjct: 83  DALSERLKGLDSGADDFLVKPFPVDELIARLRAVLRRHAGQSTNQWNVGNLVVEPSQKRV 142

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
             +G+V  L  RE ++L  L+    + V +  +  A+Y   D +V  N +E  I  LR+ 
Sbjct: 143 TQEGQVIELTPREYQLLLELVRRAHRWVPRETLMDALYREGD-SVSANALEVVIHHLRR- 200

Query: 201 LRNKLGFDPVDSKRFLGYSIDWN 223
              KLG + + + R +GY I  N
Sbjct: 201 ---KLGNETIQTIRGVGYMIGGN 220


>gi|210621230|ref|ZP_03292536.1| hypothetical protein CLOHIR_00479 [Clostridium hiranonis DSM 13275]
 gi|210154841|gb|EEA85847.1| hypothetical protein CLOHIR_00479 [Clostridium hiranonis DSM 13275]
          Length = 247

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 10/162 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR   +VP+I IS   S    +   + G DD + KP   + ++A+V A++RR    N  A
Sbjct: 87  IRRFLKVPIIFISSRDSDMDIIMSINMGGDDYIVKPFSIQLLIAKVQAVFRRAYSYNITA 146

Query: 127 ETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +   I+V       +DG   +  G V  L R E +IL  LM N G  V++ +I  A++  
Sbjct: 147 DREIIKVGEITLNIADGTVIK-DGIVVELSRNEFKILHILMQNAGSIVSRDEIMDALWST 205

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            DE + EN +  ++++LR KL++ +G D  + +K+  GY I+
Sbjct: 206 -DEFIGENTLTVNVTRLRNKLKS-IGLDDYIKTKKGQGYIIE 245


>gi|187476614|ref|YP_784637.1| two-component response regulator [Bordetella avium 197N]
 gi|18307419|emb|CAD21032.1| putative two-component regulator protein [Bordetella avium 197N]
 gi|115421200|emb|CAJ47705.1| two-component response regulator [Bordetella avium 197N]
          Length = 223

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 102/194 (52%), Gaps = 11/194 (5%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHS-QVPLIGISDYPSLQTT 87
           + L   +W Q+    D   ++  L GK G+ VL   R +RA   + P++ ++    ++  
Sbjct: 32  DGLAAVQWGQAEP-WDALLLDISLPGKDGDAVL---RELRAAGMESPVLVMTARAEIEDK 87

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEV 146
           +D  D G DD + KP   RE+ AR+ A+ RR    +++ A  G + + S  R   V G+ 
Sbjct: 88  VDMLDLGADDYLVKPFDLRELEARLRALMRRPGGQTSSVAMFGNLTLDSANRGVWVNGQP 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L RRE R+LE L+  +G+ VAK ++ + ++   D  V  N +E  IS+LR+KL +   
Sbjct: 148 LELGRREFRLLEILLTRQGQTVAKERLMAQVFDADD--VSLNALELLISRLRRKLADA-S 204

Query: 207 FDPVDSKRFLGYSI 220
            D V + R +GY +
Sbjct: 205 VDIV-TVRGVGYQV 217


>gi|83942324|ref|ZP_00954785.1| DNA-binding response regulator CtrA [Sulfitobacter sp. EE-36]
 gi|83953543|ref|ZP_00962264.1| DNA-binding response regulator CtrA [Sulfitobacter sp. NAS-14.1]
 gi|83841488|gb|EAP80657.1| DNA-binding response regulator CtrA [Sulfitobacter sp. NAS-14.1]
 gi|83846417|gb|EAP84293.1| DNA-binding response regulator CtrA [Sulfitobacter sp. EE-36]
          Length = 239

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 2/136 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           Q P++ +S     +  +  F  G DD + KP H  E++AR+ AI RR K  S +    G 
Sbjct: 72  QTPILILSGSDDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSKGHSQSVINVGR 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V  D +   V  +   L  +E ++ E L   +G  + K    + +YG  DE  E  ++
Sbjct: 132 VSVNLDAKSVTVGDKPVHLTGKEYQMFELLSLRKGSTLTKEMFLNHLYGGMDEP-ELKII 190

Query: 191 ESHISKLRKKLRNKLG 206
           +  I KLRKKL N  G
Sbjct: 191 DVFICKLRKKLSNATG 206


>gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 226

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +++    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEITPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|307544165|ref|YP_003896644.1| response regulator OmpR [Halomonas elongata DSM 2581]
 gi|307216189|emb|CBV41459.1| K02483 two-component system, OmpR family, response regulator
           [Halomonas elongata DSM 2581]
          Length = 220

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 24/229 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG       +G +++         WL++  R+ ++AI           L
Sbjct: 3   VLLVEDDPLLGDGIRTALQREGYAVD---------WLET-GRDGIAAIRHDDFSAVILDL 52

Query: 62  ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
            LP I        IR    +P++ ++   ++++ +   D G DD V KP   +E+LAR+ 
Sbjct: 53  GLPDIDGMEVLDKIRHAGSLPVLILTARDAVESRISGLDGGADDYVLKPFDLQELLARLR 112

Query: 114 AIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            I RR +  ++R  E G + +         QG    L RRE  +L  L  + G+ + +  
Sbjct: 113 VIMRRAEGRSSRLLEVGELCIDEARHRVSWQGNDISLTRREYALLLELARHPGRVMTRPH 172

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +YG  DE V  N VE H+  LRKKL   L    + + R +GY +D
Sbjct: 173 LEDLLYGWEDE-VASNAVEVHVHHLRKKLDRHL----IATVRGVGYRLD 216


>gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 228

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR     +       
Sbjct: 76  ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +D +V G+   L  ++   LEYL+ N GK + + QIF  ++G FD      +
Sbjct: 136 GIELFGKDKDVQVDGKGMKLSLKQYEFLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 194

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VE ++  LRKKL    G+   + + R +GY
Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223


>gi|323488348|ref|ZP_08093596.1| two component transcriptional regulator, winged helix family
           protein [Planococcus donghaensis MPA1U2]
 gi|323398006|gb|EGA90804.1| two component transcriptional regulator, winged helix family
           protein [Planococcus donghaensis MPA1U2]
          Length = 228

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 5/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           L ++   +   P+I ++    +   +  F +G DD + KP H  E+L R+ AI RR   +
Sbjct: 62  LKKLRSQNITTPVIMLTAKDGIGDKIQGFKAGADDYLAKPFHREELLLRLEAIVRRSGGE 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  N      +++    +  ++  E   L  ++  +LEYL+ N+   + K QIF  I+G 
Sbjct: 122 LKQNTLSFKELKLNIKNKTAQLGEETVKLNGKQFDLLEYLVNNKNIILTKEQIFDRIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           F+      VVE + S LRK L+ K  +D  + + R LGY +
Sbjct: 181 FESDTSTTVVEVYASNLRKTLK-KFNYDQYIKTFRGLGYML 220


>gi|313158184|gb|EFR57589.1| putative response regulator ArlR [Alistipes sp. HGB5]
          Length = 225

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++LE   + R   Q  +I IS   SL   ++  + G DD + KP H  E+ AR+ +
Sbjct: 57  GSGLQLLE--ELKRQRRQAGIIIISARDSLDDKIEGLELGADDYLPKPFHLAELSARIRS 114

Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR +     + + G +R+F D R  E+ G    L R+E  IL Y M+     + KT +
Sbjct: 115 VVRRHQRGGQESLDAGNVRLFPDSRRVEIAGREVELLRKEYDILYYFMSRPNHMIDKTTL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
             A++G   D+A   + V + +  LR++L +
Sbjct: 175 AEAVWGDHIDQADNFDFVYAQMKNLRRRLHD 205


>gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 222

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 14/200 (7%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           LV++GY+    +DG  +L+ F S             D+  I   ++       +L + +R
Sbjct: 22  LVREGYVVCEAEDGEAALDIFCS-----------NNDIDLIIMDVMMPKMDGWQLCKEVR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-E 127
             S+VP++ ++     Q  L  F+ GVD+ ++KP   + + ARV A+ RR    N    +
Sbjct: 71  KLSKVPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNALLRRTTGDNEEILD 130

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              I V        + G+   L  +E  +L Y M NRG  +++ +I + ++  +D   + 
Sbjct: 131 IAGITVNKIAHTVTIDGKEIDLSFKEFELLTYFMENRGVALSREKILNNVWN-YDYYGDA 189

Query: 188 NVVESHISKLRKKLRNKLGF 207
             +++H+ KLR K+  K  F
Sbjct: 190 RTIDTHVKKLRSKMGEKGKF 209


>gi|229824525|ref|ZP_04450594.1| hypothetical protein GCWU000282_01869 [Catonella morbi ATCC 51271]
 gi|229785896|gb|EEP22010.1| hypothetical protein GCWU000282_01869 [Catonella morbi ATCC 51271]
          Length = 225

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 2/152 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129
           SQVP + ++    ++  +   D G DD + KP   +E+LAR+ ++ RR   +  N    G
Sbjct: 71  SQVPTLLLTAKNQIEDKVQGLDLGADDYLTKPFDMQELLARIRSMLRRPANLVENDLRYG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + ++       V      L +RE +++E  M N+ + ++   I   I+GL D   E NV
Sbjct: 131 DLTLYRQRASLAVGAAELALNKREFQLMEMFMLNQQQVLSTDLIMERIWGL-DSDAEINV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           V  ++S LRKKL+       + + R LGY ++
Sbjct: 190 VWVNVSSLRKKLQQLGSKVTIKASRGLGYQLE 221


>gi|170758276|ref|YP_001787361.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405265|gb|ACA53676.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 221

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 21/217 (9%)

Query: 9   ALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
            L + GY+     DG +++E F   EF+  +       +  I+ F++ +         II
Sbjct: 21  VLKESGYLVEVATDGLIAVEMFRRGEFDLIILDVM---LPKIDGFVVCE---------II 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124
           R  S +P+I ++     +  +  F+  VDD + KP     ++ RV A+ RR   L+ +N+
Sbjct: 69  RKESSMPIIMLTALGEEEDEMKGFELKVDDYIIKPFSINLLIKRVEAVLRRANGLEENNS 128

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 I ++       V  +   L  +E +ILE L++N G+  ++  + + I+G +D  
Sbjct: 129 TLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIWG-YDYF 187

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  V+++HI    K LR KL  D + + R +GY I+
Sbjct: 188 GDTRVIDTHI----KNLRQKLNIDYIKTIRGVGYKIE 220


>gi|187777120|ref|ZP_02993593.1| hypothetical protein CLOSPO_00665 [Clostridium sporogenes ATCC
           15579]
 gi|187774048|gb|EDU37850.1| hypothetical protein CLOSPO_00665 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 84/159 (52%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR HS+VP+I IS   S    +   ++G DD + KP  +  +LA++  + RR+  S  + 
Sbjct: 63  IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 122

Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +T     G + ++++    E +G    L + E  +L YL+ N  K V++  +   ++   
Sbjct: 123 DTDFLKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLLKNINKIVSRDTLLEILWSDT 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  +++N +  ++++LRK+L      D +++KR  GY +
Sbjct: 183 D-FIDDNTLSVNVTRLRKRLEEVGITDAIETKRGQGYML 220


>gi|145298334|ref|YP_001141175.1| two-component system responsse regulator PhoP [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851106|gb|ABO89427.1| two-component system responsse regulator PhoP [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 224

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 3/146 (2%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132
           P+I ++   + Q  ++  ++G DD + KP    E+LAR+ A+ RR     + R + G   
Sbjct: 74  PIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSAGFISPRVKAGDYE 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    ++  + GE   L   E  ILEYLM N  + V+K Q+   +YG  D   + N +E 
Sbjct: 134 LDLSRKELTIGGEPVVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG--DGEGDPNTIEV 191

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218
            +S+LRKKL  +    P+ + R  GY
Sbjct: 192 MVSRLRKKLDPEGNIQPISTIRRQGY 217


>gi|307299054|ref|ZP_07578856.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915479|gb|EFN45864.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 225

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 18/173 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VLE  +I  + S++P++ ++   S++  +  FD G DD + KP   RE++ R+ ++ 
Sbjct: 59  GWQVLE--KIRDSGSRIPVLMLTALDSIEDKVRGFDLGADDYLPKPFDIRELVVRIQSLL 116

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKR 167
           RR +         P RV   G D E+           E   L ++E +ILEYLM N G+ 
Sbjct: 117 RRAQFGG-----APSRVLRVG-DLELDMSLKTASRGNEKIELRKKEYQILEYLMLNSGRV 170

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V K+++   ++   DE +  +V+ SHI  +RKK+        + + R +GY I
Sbjct: 171 VPKSELEEHLWNEDDE-LWSDVIRSHIKNIRKKVDGGRRKKLIKTVRGMGYEI 222


>gi|325981914|ref|YP_004294316.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325531433|gb|ADZ26154.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 228

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 5/184 (2%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGV 95
           +L S    D + I+  L GK    LE+ + +R    + P++ ++   S Q  +   + G 
Sbjct: 38  FLASEYPLDAAIIDIGLPGKSG--LEIIKTLRERGNLLPILILTARSSWQDKVQGLEMGA 95

Query: 96  DDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
           DD + KP    E+LARV A+ RR   +     + GPI V    +   +      L   E 
Sbjct: 96  DDYLTKPFQMEELLARVKALLRRATGIPQTLLKCGPITVDVTAQSVAINEVEIELTSFEY 155

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
           R+LE L+ + G+ ++K  +   +Y   DE  + NV+E  I +LR+KL      +P+++ R
Sbjct: 156 RLLEELVRHHGEVLSKHTLSDYLYP-HDEDRDSNVLEVMIGRLRRKLDPDGTLNPIETMR 214

Query: 215 FLGY 218
             GY
Sbjct: 215 GRGY 218


>gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 16/189 (8%)

Query: 33  EFEEWLQSSAREDVSAIEAF-------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           ++E +  SS  E +  I+ +       ++  G+   E+   IR     P+I ++     +
Sbjct: 26  DYEVFTASSGEEALEKIKLYPDLILLDIMMPGKNGYEVCNDIRDIVSCPIIFLTAKGEER 85

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-----PIRVFSDGRDP 140
             +    SG DD + KP   R++ AR+ A  RR K + N +E        I +    R+ 
Sbjct: 86  DIVKGLASGGDDYIQKPFSLRQLKARIHAHLRREKRNTNNSEKANLYFKNISINLRNREV 145

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
              G++  L ++E  I+E+L  N G+  +K QI+  ++G +D   +   V  H+ K+R K
Sbjct: 146 YCNGQLVILTKKEFDIIEFLSVNCGQVFSKEQIYEKVWG-YDAEGDSASVAEHVKKIRHK 204

Query: 201 LRNKLGFDP 209
           ++N   FDP
Sbjct: 205 IQN---FDP 210


>gi|168177582|ref|ZP_02612246.1| regulatory protein VanR [Clostridium botulinum NCTC 2916]
 gi|182671037|gb|EDT83011.1| regulatory protein VanR [Clostridium botulinum NCTC 2916]
          Length = 233

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 12/164 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  ++ P+I +S   S +T L+  + G DD + KP    E++ARV +  RR L+   + 
Sbjct: 70  IREITKAPIIIVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVNSNLRRYLEFPIDE 129

Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   I ++ D       ++ +V   +  L  RE  +LE L+ N  K  +K  IF +I+G
Sbjct: 130 EKKNNILIYKDITLNKESKEVKVGQTIIILTAREFAVLELLLTNPNKVYSKANIFESIWG 189

Query: 180 LFDEAV-EENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220
             +E + ++N V  H+S+LR KL   N    D +++   +GY +
Sbjct: 190 --EEFLGDDNTVNVHVSRLRSKLSKANNNREDYIETVWAMGYRL 231


>gi|49474029|ref|YP_032071.1| two-component system regulatory protein [Bartonella quintana str.
           Toulouse]
 gi|49239533|emb|CAF25890.1| Two-component system regulatory protein [Bartonella quintana str.
           Toulouse]
          Length = 222

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 22/139 (15%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEV 142
            D+G DD V KP H  E++AR+ A+ RR        L       +T   RVF D      
Sbjct: 91  IDAGADDYVVKPFHLEELMARLRALIRRSAGHATSALCCGAVLLDTKTSRVFVD------ 144

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201
            G++  L   E R+L YLM + G+ V+KT++   +Y   FD+  + N VE  + +LR+  
Sbjct: 145 -GQLIKLTSYEFRLLSYLMHHCGRVVSKTELTEHLYDQDFDK--DSNTVEVFVGRLRR-- 199

Query: 202 RNKLGFDPVDSKRFLGYSI 220
             KLG D +++ R +GY +
Sbjct: 200 --KLGVDVIETIRGMGYRV 216


>gi|125973922|ref|YP_001037832.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005047|ref|ZP_05430018.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418085|ref|ZP_06249105.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714147|gb|ABN52639.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255991015|gb|EEU01126.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409487|gb|EFB39745.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939876|gb|ADU73910.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 232

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%)

Query: 10  LVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           LVK+GY +  F D    LE FN    +  +      ++                L   IR
Sbjct: 24  LVKEGYDVETFTDGRSILEAFNKKPADLLVIDIMMPEIDG------------FSLCSTIR 71

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S VP+I +S   +    +     G DD + KP    E++AR+ +I+RR+++     ++
Sbjct: 72  RQSSVPIIIVSAKDTEPDKIAGLTLGSDDYLTKPFSPMELIARIKSIFRRIELDKMHNDS 131

Query: 129 ------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G I +  D +  E  G+   L   E  +L YL  N+ + V+++++   ++G F+
Sbjct: 132 VREIRIGDIVINVDKKQAEFNGKNIGLTGTEFNLLYYLAKNKNRAVSRSELLDKVWG-FE 190

Query: 183 EAVEENVVESHISKLRKKLRN 203
             VE    +  I +LRKKL +
Sbjct: 191 NYVETRATDDTIKRLRKKLSD 211


>gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 229

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 3/135 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFP 148
            D+G DD + KP    E++AR+ A+ RR++  ++++R   G I +          G+   
Sbjct: 95  LDTGADDYLTKPFSMTELIARIRAVLRRIRPGLADDRVGHGDIVIDRVAHRVRRSGKEVH 154

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L   E R+L++ M + G+  ++ Q+  A++G  D  VE   V+ H+ +LRK L  +   +
Sbjct: 155 LGPTEFRLLDHFMRHPGRVFSREQLLDAVWG-SDVYVEARTVDVHVGRLRKALNVEESAN 213

Query: 209 PVDSKRFLGYSIDWN 223
           P+ + R  GYS+D +
Sbjct: 214 PIRTVRSAGYSLDLD 228


>gi|163758753|ref|ZP_02165840.1| response regulator,controls chromosomal replication initiation
           protein [Hoeflea phototrophica DFL-43]
 gi|162284043|gb|EDQ34327.1| response regulator,controls chromosomal replication initiation
           protein [Hoeflea phototrophica DFL-43]
          Length = 233

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 3/147 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV  +   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVGSQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206
             DE  E  +++  I KLRKKL    G
Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLATSAG 206


>gi|291548309|emb|CBL21417.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 230

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G    E  + IR     P++ ++     +  L     G DD + KP   +E+ ARVAA  
Sbjct: 66  GTDGFEFCKQIRNMVDCPILFLTAKTLEEDILFGLGIGADDYITKPFRIQELRARVAAHL 125

Query: 117 RRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR K  ++   +    IR     +   V  +  PL + E  I EYL  NRG+   K QI+
Sbjct: 126 RREKREHHSTLSFEPDIRFDLSAKVLYVSEQPVPLTKSEYSICEYLAKNRGQVFTKEQIY 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            A++G FD   + + + +HI  +R KL +     P+ +   +GY
Sbjct: 186 EAVFG-FDGIGDNSTISTHIKNIRAKLEH-FKISPISTVWGIGY 227


>gi|111017096|ref|YP_700068.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110816626|gb|ABG91910.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 225

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 26/221 (11%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           R L  +G++     DG+S  GF +         S   DV  ++  L GK G  ++   R 
Sbjct: 18  RGLTAEGFVVDVEHDGLS--GFEA-------ALSGDFDVVVLDIMLPGKHGYDIVRDLR- 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
            R     P++ +S         D FD G DD + KP     ++AR+ A+ RR       A
Sbjct: 68  -RREVWTPVLMLSAKDGEYDLADAFDLGADDYLIKPFSFVVLVARLRALVRR------GA 120

Query: 127 ETGPIRVFSDGR--DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              P  + +DG   DP        G    L  RE  +LE+LM N G  V K +I  +++ 
Sbjct: 121 PRRPTVLTADGLELDPARHRVTRDGTALALTPREYSVLEFLMRNAGSAVTKQEILQSVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E  ++N+VE +I  LR+K+    G + +D+ R +GY +
Sbjct: 181 THYEG-DDNIVEVYIGYLRRKVDTPFGRNSIDTVRGVGYRL 220


>gi|332295042|ref|YP_004436965.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332178145|gb|AEE13834.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 224

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +++RA   ++P++ +S        +   D G DD + KP   +E+LAR+ ++ RR  
Sbjct: 63  EILKVLRARGLEIPILVLSALTEEHNKVSLLDLGADDYLTKPFGMKELLARIRSLIRRKN 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E GP RV  +      QG +  L   E ++L +L  N G+  ++ ++   ++G 
Sbjct: 123 GFGLVVEKGPFRVDKEKSQIYFQGNLMNLTATEYKLLLFLFENNGRTYSREKLIDKVWGE 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
            +  VE  +V+ +I +LR+K+      DP     + ++R  GY ++
Sbjct: 183 -EYFVEARMVDVYIRRLREKIET----DPSNPQILKTRRGFGYVLE 223


>gi|251789546|ref|YP_003004267.1| DNA-binding transcriptional regulator PhoP [Dickeya zeae Ech1591]
 gi|27526279|emb|CAD33237.1| PhoP protein [Erwinia chrysanthemi]
 gi|247538167|gb|ACT06788.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 222

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 3/156 (1%)

Query: 68  RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125
           R+H  ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR   +++  
Sbjct: 67  RSHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNSGLASQI 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
               P  V    R+  V GE   L   E  I+E L+ N GK V+K  +   +Y    E  
Sbjct: 127 ISLPPFEVDLSRRELLVHGEAVKLTAFEYTIIETLIRNNGKVVSKESLMLQLYP-DAELR 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E + ++  + +LRKKL++    D + + R  GY  D
Sbjct: 186 ESHTIDVLMGRLRKKLQSANSHDVITTVRGQGYRFD 221


>gi|327402108|ref|YP_004342946.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327317616|gb|AEA42108.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 229

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 7/158 (4%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------KVSN 123
           ++Q P+I ++ +  L+  +  +D G DD + KP + RE+L R+ ++ +R       +  N
Sbjct: 71  NTQTPVIMLTAFDELEDKIQGYDCGADDYLTKPFYMRELLLRIQSLLKRSENLGKNEFEN 130

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N      I + +  +    QG+   L  RE +IL  L+  +G+ V+K  +   I+G   +
Sbjct: 131 NLLVADDIVINNASKKVTRQGKEVQLTPREFQILLKLVECKGELVSKQDLVKEIWGNIVD 190

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A   N +E +I+ LR KL    G   + +K   GY  D
Sbjct: 191 A-NTNTIEVYINFLRGKLDKPFGKQSIKTKIGYGYYFD 227


>gi|146307998|ref|YP_001188463.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576199|gb|ABP85731.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 225

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        ++G  ++   + E   +   S   D++ ++  L G     +
Sbjct: 3   LLVVEDEALLRHHLFTRLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGLPGMSG--I 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R+  +  P++ ++   + Q  ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRSQDKNFPILILTARGNWQDKVEGLSCGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  E G + +  + +   V  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFTKSTIEAGSLVLDLNRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL   LG   +++ R  GY
Sbjct: 181 GDDER-DPNVIEVLVGRLRRKLEAMLGGKLIETVRGQGY 218


>gi|160900848|ref|YP_001566430.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366432|gb|ABX38045.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 237

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 18/223 (8%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL------------EL 63
           IA   DD + LE    +  E        +  SA++  L  +   +L            +L
Sbjct: 3   IAALDDDPLQLEMLRQVALETGHSCHTYQTGSALQLELRRESFDLLIVDWHLPDMEGTDL 62

Query: 64  PRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            R  R H   ++P++ I+        ++    G DD + KP+ H E+ AR+AA+ RR   
Sbjct: 63  VRWARGHVSRELPILIITHRSEEADIVEGLSCGADDFMVKPVRHAELRARMAALLRRAYP 122

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N ++  E GP R  +     E+ G+   +  RE  +   L  N+G+ +++  +  A++G
Sbjct: 123 VNTQSVLEFGPYRFLTTTNSLEMHGQPIEVTHREYTLALTLFQNQGRLLSREHLREAVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
             +  V+   +++HIS+LR  L  + G     S  +  GY +D
Sbjct: 183 -HNAEVQSRSLDTHISRLRALLNLRAGQPYAISAVYGYGYRLD 224


>gi|28210147|ref|NP_781091.1| two-component response regulator [Clostridium tetani E88]
 gi|28202583|gb|AAO35028.1| two-component response regulator [Clostridium tetani E88]
          Length = 231

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 85/157 (54%), Gaps = 6/157 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR+HS+VP+I IS   S    +   D+G DD + KP  +  +LA++  + RR+  S  + 
Sbjct: 70  IRSHSKVPIIFISSRDSDMDQVMAIDNGGDDFITKPFSYDVLLAKIKGVLRRVYGSYAKG 129

Query: 127 ETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +T  +++     +++    E +G+   L + E  +L +L+ N  K V++  +   ++   
Sbjct: 130 DTDFLKIDDLILYTNKNVLEYKGKKTELSKNEFSLLLHLLKNINKIVSRDTLLGILWSDI 189

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D  +++N +  ++++LRK+L      + +++KR  GY
Sbjct: 190 D-FIDDNTLSVNVTRLRKRLEEIGITNAIETKRGQGY 225


>gi|330876294|gb|EGH10443.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 225

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGG--L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   +  P++ ++   + Q  ++   +G DD V K     E+ AR+ A  RR  
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKTFQFEELEARLNAWLRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL + + F P+++ R +GY
Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGY 218


>gi|168179677|ref|ZP_02614341.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182669403|gb|EDT81379.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 221

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 19/199 (9%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85
           +L   A + + A+E F  G  + ++    LP+I        IR  S VP+I ++     +
Sbjct: 27  YLVEVATDGLIAVEMFRRGNFDLIVLDVMLPKIDGFVVCEIIRKESSVPIIMLTALGEEE 86

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142
             +  F+  VDD + KP     ++ RV A+ RR   L+ +N+      I ++       V
Sbjct: 87  DEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNSTLTFEEIIIYPSNYKTLV 146

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             +   L  +E +ILE L++N G+  ++  + + I+G +D   +  V+++HI    K LR
Sbjct: 147 NNKEIELTYKEFQILEILISNVGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201

Query: 203 NKLGFDPVDSKRFLGYSID 221
            KL  D + + R +GY I+
Sbjct: 202 QKLNIDYIRTIRGVGYKIE 220


>gi|319947261|ref|ZP_08021494.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746503|gb|EFV98763.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  KV+ N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKVNENTLSYGNV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V        V+G+   L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 TVNLSTNSTLVEGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+       + + R +GY
Sbjct: 192 VYVSKIRKKLKGTDFAKNLQTLRSVGY 218


>gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 227

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 16/161 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R     P++ ++   ++Q  +   + G DD + KP    E+LAR+ A+ RR        
Sbjct: 77  LRPTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA-----G 131

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  P+    D       R    +GE  P+  RE  ++EYL  ++G+ V++T ++  ++  
Sbjct: 132 QPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D++   N+++ H+S LRKKL  +L    + ++R  GYSI+
Sbjct: 191 EDDSTLSNLLDVHVSNLRKKLAPEL----ITTRRGHGYSIE 227


>gi|325679466|ref|ZP_08159046.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324108753|gb|EGC02989.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 44  EDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           E+VS I   L+  G     + + ++    VP+I  S    +   +D F  G DD V KP 
Sbjct: 43  EEVSLILLDLMLPGLSGEAVIKGLKEKKNVPVIVTSAIHDVSKKVDLFALGADDYVTKPF 102

Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRIL 157
           H+ E+LAR++A  R +     +   G +  + D             G    L + E  +L
Sbjct: 103 HNEELLARISARLRNVLPEQTK---GDVLTYKDIILNKSEHTVSCHGTAVELSKHEFALL 159

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           E  M +  +   K++I+  ++  ++ + ++N +  HISKLRKKL+
Sbjct: 160 ELFMESPKRTCTKSRIYDTVWD-YENSADDNTLNVHISKLRKKLK 203


>gi|242243834|ref|ZP_04798278.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           W23144]
 gi|242232732|gb|EES35044.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           W23144]
 gi|319401656|gb|EFV89865.1| response regulator [Staphylococcus epidermidis FRI909]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 8/197 (4%)

Query: 28  GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87
           G  SL+F E    +   D++ ++  +   G    EL + ++    +P+I ++   +L   
Sbjct: 34  GEASLDFLE----NKNVDIAIVDIMM--SGMDGFELCQTLKDDYHIPVIMLTARDALSDK 87

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEV 146
              F SG DD V KP   +E+L R+ A+ RR ++ ++N  + G + +     +  V  + 
Sbjct: 88  ERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQINADNELQLGNLILNQSYMEITVGSKT 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             LP +E ++L  L +N      +  I   I+G FD   ++  V+ HI +LR++L     
Sbjct: 148 MNLPNKEFQLLFLLASNPKHIFTRDDIIEKIWG-FDYEGDDRTVDVHIKRLRQRLSKLKS 206

Query: 207 FDPVDSKRFLGYSIDWN 223
              + + R  GY +D N
Sbjct: 207 SVSIQTVRGQGYRVDQN 223


>gi|166032709|ref|ZP_02235538.1| hypothetical protein DORFOR_02424 [Dorea formicigenerans ATCC
           27755]
 gi|166027066|gb|EDR45823.1| hypothetical protein DORFOR_02424 [Dorea formicigenerans ATCC
           27755]
          Length = 217

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 96/191 (50%), Gaps = 15/191 (7%)

Query: 21  DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL------IG--KGEKVLELPRIIRAHSQ 72
           D  +  +G+ ++     L +S +E +  I++F+      IG   G+ +  L + ++ + +
Sbjct: 17  DTSLQNQGYTTI-----LAASRKEAIKNIDSFVDLLIVDIGLPDGDGI-NLYQELQKNGR 70

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P I ++     +  L  FD G DD V KP   + +L R+  + +R K + N    G + 
Sbjct: 71  IPAIFLTAKDDEKDMLKAFDIGADDYVVKPFSIKVLLKRMEVVLKR-KSNENVFMCGQVI 129

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           ++SD +   V      L  +E ++LEY + N+ + + K  I   I+G+  E ++ N +  
Sbjct: 130 LYSDRKQVFVGKTEISLTLKEYQLLEYFIMNQNQVLTKEMIMENIWGIDSEFIDPNTISV 189

Query: 193 HISKLRKKLRN 203
            IS+L+KKL +
Sbjct: 190 MISRLKKKLND 200


>gi|110800417|ref|YP_694579.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110675064|gb|ABG84051.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 226

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP+I ++   S    L   + G DD V KP + + +LAR+A+I +R   S
Sbjct: 65  ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ET       ++      +   +GEV  L + E +IL  L+ N+GK V++  I  ++
Sbjct: 124 GIEGETEIFNCRELKYNMSTSEVSFKGEVEELTKNESKILNILIRNKGKIVSRDNIIKSL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   +E +++N +  ++++LR+K+        + +KR  GY
Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223


>gi|225573147|ref|ZP_03781902.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039502|gb|EEG49748.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM
           10507]
          Length = 223

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP++ ++     Q  L    SG +D + KP H   +LAR   + R ++
Sbjct: 62  MEVLRRIRLQSNVPVLILTALGDTQNELSSLRSGANDYMAKPFHPEVLLARAENLMRMVR 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++  + G + V        V+G+   L  +E ++L YLM NR   + + QI   ++G
Sbjct: 122 NKSDSHLQVGEVVVDEKKCRVYVRGKEISLTHKEYQLLVYLMQNRDIVLTRDQILEKVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   +   +++HI  LR  L++   +  + + R +GY++
Sbjct: 182 -FDYEGDIRTIDTHIKMLRMDLKSCGSY--IRTIRGMGYTL 219


>gi|319424630|gb|ADV52704.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 219

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++   +    +D   +G DD + KP H  E+LAR+  + RR    ++N  +   +
Sbjct: 73  MPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGV 132

Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
            +  D +    V G V  L + E R+L YLM N  K V+K+++   IY   D+  + NV+
Sbjct: 133 SLDVDKQAVTNVDGAVIELTKIEYRLLHYLMVNPSKIVSKSELSERIYE-EDQIKDSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++++LR+    +LG D ++++R  GY +
Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217


>gi|322377335|ref|ZP_08051826.1| DNA-binding response regulator VncR [Streptococcus sp. M334]
 gi|321281535|gb|EFX58544.1| DNA-binding response regulator VncR [Streptococcus sp. M334]
          Length = 218

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 16/167 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R  
Sbjct: 60  LEVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY- 118

Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +TG I  + D +         + G+   +  +E  IL+YL+ N G+ + ++QI 
Sbjct: 119 -----YDTGRIFSYKDAKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQII 173

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A++   DE   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 174 DAVWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|323528170|ref|YP_004230322.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323385172|gb|ADX57262.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 231

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 6/150 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIR 132
           P++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR      + A+ G + 
Sbjct: 82  PVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRGHGQEASLAQCGTLT 141

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
             S  R   + GE   L  RER +LE LM   G+ + K  +   I+GL DE+V  + +E 
Sbjct: 142 YDSVDRGFTLDGEPLALTPRERSVLEVLMLRNGRAINKETLSEKIFGL-DESVNADAIEI 200

Query: 193 HISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++ +LRKKL R+ +G   + + R LGY ++
Sbjct: 201 YVHRLRKKLERSSVG---IVTLRGLGYLLE 227


>gi|241767752|ref|ZP_04765363.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241361239|gb|EER57832.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 143

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            D+G DD + KP    E+ AR+ A+ RR + +++R   G + +    R   + G +  LP
Sbjct: 9   LDAGADDYLGKPFDLAEVEARLRALVRRTQGTDDRTAAGALVLDRRARRFMLHGALLELP 68

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
            RE  +L  LM   G  V+K  +   + G FD+++ +N +E+ IS+LRKKL        +
Sbjct: 69  AREFEVLWELMTPPGHVVSKRTLSDKLSG-FDDSLGDNALEAFISRLRKKLAGSGA--SI 125

Query: 211 DSKRFLGYSIDWN 223
            + R LGY ++ +
Sbjct: 126 RTLRGLGYMLEAD 138


>gi|225027390|ref|ZP_03716582.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353]
 gi|224955287|gb|EEG36496.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353]
          Length = 236

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 83  AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP++E  +L  L A+ G+   K Q+   ++G   EA + 
Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 201

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++L++   F+ V + R +GY +
Sbjct: 202 HTIEVHIGRIRERLKDNPDFEIV-TMRGIGYKV 233


>gi|57865389|ref|YP_189511.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A]
 gi|251811932|ref|ZP_04826405.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875223|ref|ZP_06284096.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367070|ref|ZP_06613742.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81673433|sp|Q5HLN2|HSSR_STAEQ RecName: Full=Heme response regulator hssR
 gi|57636047|gb|AAW52835.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A]
 gi|251804531|gb|EES57188.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295988|gb|EFA88509.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318800|gb|EFE59174.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733807|gb|EGG70131.1| heme response regulator HssR [Staphylococcus epidermidis VCU028]
 gi|329735102|gb|EGG71398.1| heme response regulator HssR [Staphylococcus epidermidis VCU045]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 8/197 (4%)

Query: 28  GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87
           G  SL+F E    +   D++ ++  +   G    EL + ++    +P+I ++   +L   
Sbjct: 34  GEASLDFLE----NKNVDIAIVDIMM--SGMDGFELCQTLKDDYHIPVIMLTARDALSDK 87

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEV 146
              F SG DD V KP   +E+L R+ A+ RR ++ ++N  + G + +     +  V  + 
Sbjct: 88  ERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQINADNELQLGNLILNQSYMEITVGSKT 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             LP +E ++L  L +N      +  I   I+G FD   ++  V+ HI +LR++L     
Sbjct: 148 MNLPNKEFQLLFLLASNPKHIFTRDDIIEKIWG-FDYEGDDRTVDVHIKRLRQRLSKLKS 206

Query: 207 FDPVDSKRFLGYSIDWN 223
              + + R  GY +D N
Sbjct: 207 SVSIQTVRGQGYRVDQN 223


>gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 219

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 28/220 (12%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL  +GY   +  DG S L   N   FE  +       +  +E            L R+ 
Sbjct: 19  ALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGLEL-----------LKRLR 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
            A + VP++ ++   +    +   D+G DD + KP    E+ AR+ A+ RR   S NR E
Sbjct: 68  AAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRR---SFNRPE 124

Query: 128 TGPIR----VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             P+     +  D  + +V  QG    LPR+E  +L  L+A  G+ + + ++   +YG +
Sbjct: 125 --PVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE VE N +E HI  LRKK   +L    + + R +GY +D
Sbjct: 182 DEDVESNALEVHIHHLRKKFFPEL----IRTVRGVGYLVD 217


>gi|312113420|ref|YP_004011016.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311218549|gb|ADP69917.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 221

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 16/216 (7%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           +RAL   GY+     +G           + W +    +  + I    + + + +  L R 
Sbjct: 17  ERALQASGYVVETAGEG----------EDAWFRGDTEDYAAVILDLGLPRMDGLSVLKRW 66

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
             A  ++P++ ++   S    +D  D+G DD + KP H  E+L+R+ AI RR    +++ 
Sbjct: 67  RAADRRMPVLILTARGSWAERVDGIDAGADDYLPKPFHMEELLSRLRAIIRRSAGAASSL 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G + V        V+G    L   E R++ YL+ +RG+ V + ++  A+YG  DE  
Sbjct: 127 VSIGDVTVDDRQMRVSVRGVPVALSALEYRVVAYLVLHRGRVVPQHELEEAVYG-HDEDH 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + N +E     L  ++R KLG   + ++R  GY ++
Sbjct: 186 DSNALEV----LMGRVRRKLGVPVIGTRRGFGYIVE 217


>gi|218281586|ref|ZP_03488007.1| hypothetical protein EUBIFOR_00572 [Eubacterium biforme DSM 3989]
 gi|218217278|gb|EEC90816.1| hypothetical protein EUBIFOR_00572 [Eubacterium biforme DSM 3989]
          Length = 231

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSN- 123
           IR  S+VP+I IS      + +     G DD V KP     + A++ AI RR    VSN 
Sbjct: 76  IREESKVPIIFISSATDNMSIVMAISKGADDFVVKPFDLNVLAAKITAILRRSYDFVSNH 135

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   IR   D      Q     L + E +IL  LM  +G  V++ ++   ++   D 
Sbjct: 136 NILEYQGIRFNLDDNTVSFQSSQIELSKNEAKILRLLMEKKGTIVSRDRLMEYLWKT-DF 194

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V+EN +  ++++LRKKL +    D + +K+ LGY +
Sbjct: 195 YVDENALSVNVNRLRKKLESIGIVDFIQTKKGLGYKV 231


>gi|108762500|ref|YP_633364.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108466380|gb|ABF91565.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  +P +     +  ++ IS    +   +   D+G DD + KP H  E+ AR+ ++ 
Sbjct: 57  GDGLCLIPELRAMQPEAGVLVISAMGDVPERVAGLDAGADDYMGKPFHADELRARIRSVL 116

Query: 117 RRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR   +        G I      R   VQG    L RRE  +L  LM    + V +  + 
Sbjct: 117 RRPAQARQLQPVRCGAIEYDLGSRQMTVQGRPLLLRRREASLLAALMRRARRVVQRDTLI 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +YG FDE    N +E+HIS+LR++L +      +   R +GY ID
Sbjct: 177 KEVYG-FDEEPSANTLEAHISRLRRRLEDCGAGVVLHPVRGVGYLID 222


>gi|17987620|ref|NP_540254.1| transcriptional regulatory protein PhoP [Brucella melitensis bv. 1
           str. 16M]
 gi|62289566|ref|YP_221359.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|82699496|ref|YP_414070.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|189023825|ref|YP_001934593.1| PhoP family transcriptional regulator [Brucella abortus S19]
 gi|225852129|ref|YP_002732362.1| winged helix family two component transcriptional regulator
           [Brucella melitensis ATCC 23457]
 gi|237815063|ref|ZP_04594061.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308
           A]
 gi|254688887|ref|ZP_05152141.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 6 str. 870]
 gi|254693368|ref|ZP_05155196.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 3 str. Tulya]
 gi|254697019|ref|ZP_05158847.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729918|ref|ZP_05188496.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 4 str. 292]
 gi|256044306|ref|ZP_05447210.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113143|ref|ZP_05454020.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis bv. 3 str. Ether]
 gi|256257135|ref|ZP_05462671.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 9 str. C68]
 gi|256264359|ref|ZP_05466891.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2
           str. 63/9]
 gi|260545673|ref|ZP_05821414.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC
           8038]
 gi|260563660|ref|ZP_05834146.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1
           str. 16M]
 gi|260754372|ref|ZP_05866720.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260757591|ref|ZP_05869939.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761417|ref|ZP_05873760.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883397|ref|ZP_05895011.1| FeuP [Brucella abortus bv. 9 str. C68]
 gi|261213618|ref|ZP_05927899.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|265990718|ref|ZP_06103275.1| FeuP [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994556|ref|ZP_06107113.1| FeuP [Brucella melitensis bv. 3 str. Ether]
 gi|297247981|ref|ZP_06931699.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|18418609|gb|AAL68973.1|AF007804_1 FeuP [Brucella abortus]
 gi|17983330|gb|AAL52518.1| transcriptional regulatory protein phop [Brucella melitensis bv. 1
           str. 16M]
 gi|62195698|gb|AAX73998.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|82615597|emb|CAJ10584.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Brucella
           melitensis biovar Abortus 2308]
 gi|189019397|gb|ACD72119.1| Transcriptional regulatory protein PHOP [Brucella abortus S19]
 gi|225640494|gb|ACO00408.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis ATCC 23457]
 gi|237789900|gb|EEP64110.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308
           A]
 gi|260097080|gb|EEW80955.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC
           8038]
 gi|260153676|gb|EEW88768.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1
           str. 16M]
 gi|260667909|gb|EEX54849.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671849|gb|EEX58670.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674480|gb|EEX61301.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872925|gb|EEX79994.1| FeuP [Brucella abortus bv. 9 str. C68]
 gi|260915225|gb|EEX82086.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|262765669|gb|EEZ11458.1| FeuP [Brucella melitensis bv. 3 str. Ether]
 gi|263001502|gb|EEZ14077.1| FeuP [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094652|gb|EEZ18431.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2
           str. 63/9]
 gi|297175150|gb|EFH34497.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
          Length = 229

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR    +++  
Sbjct: 68  RSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEF 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y   FD   
Sbjct: 128 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + +LRK    K+G D +++ R +GY +
Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 216


>gi|22537931|ref|NP_688782.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25011874|ref|NP_736269.1| hypothetical protein gbs1835 [Streptococcus agalactiae NEM316]
 gi|76798833|ref|ZP_00781044.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae
           18RS21]
 gi|77409021|ref|ZP_00785740.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|61222656|sp|P0A4H9|DLTR_STRA3 RecName: Full=Transcriptional regulatory protein dltR
 gi|61222657|sp|P0A4I0|DLTR_STRA5 RecName: Full=Transcriptional regulatory protein dltR
 gi|22534830|gb|AAN00655.1|AE014273_2 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|18076414|emb|CAC83083.1| putative response regulator, DltR [Streptococcus agalactiae]
 gi|24413415|emb|CAD47494.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76585807|gb|EAO62354.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae
           18RS21]
 gi|77172362|gb|EAO75512.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 109/223 (48%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +   AL  D G S++  F+  +  E++ +   + V  +   ++ K   +
Sbjct: 3   LLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLV--LLDIMLPKRSGL 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R+  A  + P+I ++        ++  D G DD + KP    E+LAR+    R+  
Sbjct: 61  SVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  N+   G IR+ +D  + E +     L  +E  ++E  M N  + + K Q+ S ++G
Sbjct: 121 LIRANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             D + E N +E  IS LRKKLR  K   + + +K F GYS++
Sbjct: 181 PSDNS-EYNQLEVFISFLRKKLRFLKADIEIITTKGF-GYSLE 221


>gi|315122690|ref|YP_004063179.1| two component response regulator [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496092|gb|ADR52691.1| two component response regulator [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 236

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 15/190 (7%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           Y+   G+DGV L      +++  L      D+S  E        + L + RI       P
Sbjct: 28  YVTNLGEDGVDLGKI--YDYDIILLDLNLPDISGFEVL------RTLRMARI-----STP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133
           +  +S   S++  +     G DD ++KP++  E++AR+ AI RR +  + +   TG + V
Sbjct: 75  VCILSGMSSIEDKVRGLGYGADDYISKPLNKDELVARIHAIVRRSRGHAQSVIATGDLVV 134

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D +  EVQG    L  +E +++E L   +   + K    + +Y   DE  E  +++  
Sbjct: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP-EVKIIDVF 193

Query: 194 ISKLRKKLRN 203
           I KLRKKL N
Sbjct: 194 ICKLRKKLSN 203


>gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 236

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R IR++SQ+P+I ++    LQ  L  F+ G DD V KP   +E++ARV A+ RR  +
Sbjct: 68  EVCRQIRSNSQLPVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRRAGE 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R +   + +  +    EV G    L +RE  +L +L ++ G+   +  +   ++G 
Sbjct: 128 TKPRRVDLPDLTIDLESYVVEVAGRKVELTKRETELLYFLASHPGRVFTREFLLQRVWG- 186

Query: 181 FDEAVEENVVESHISKLRKKL 201
           F+       V+ H+++LR+KL
Sbjct: 187 FEFPGNTRTVDVHVNRLREKL 207


>gi|238925636|ref|YP_002939153.1| hypothetical protein EUBREC_3293 [Eubacterium rectale ATCC 33656]
 gi|238877312|gb|ACR77019.1| hypothetical protein EUBREC_3293 [Eubacterium rectale ATCC 33656]
          Length = 223

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 70  AGYQIPVLMITAKSSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 129

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G   +  D        E   LP++E  +L  L A+ G+   K Q+   ++G   EA + 
Sbjct: 130 IGSTELDYDAMTVVTGDEALVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 188

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++ +    F+ V + R LGY +
Sbjct: 189 HTIEVHIGRIRERFKENPDFEIV-TMRGLGYKV 220


>gi|253579380|ref|ZP_04856650.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251849478|gb|EES77438.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 220

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G    E  + IR     P++ ++     +  L     G DD + KP   +E+ ARVAA  
Sbjct: 56  GTDGFEFCKQIRNMVDCPILFLTAKTLEEDILFGLGIGADDYITKPFRIQELRARVAAHL 115

Query: 117 RRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR K  ++   +    IR     +   V  +  PL + E  I EYL  NRG+   K QI+
Sbjct: 116 RREKREHHSTLSFEPDIRFDLSAKVLYVSEQPVPLTKSEYSICEYLAKNRGQVFTKEQIY 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            A++G FD   + + + +HI  +R KL +     PV +   +GY
Sbjct: 176 EAVFG-FDGIGDNSTISTHIKNIRAKLEH-FKISPVSTVWGIGY 217


>gi|241766482|ref|ZP_04764351.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241363311|gb|EER58847.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +R+  S +P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  LEVLKKLRSRGSALPVLILTAADSVEERVKGLDFGADDYMAKPFSLQELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGGTSSAIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 E-WGEEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220


>gi|89055982|ref|YP_511433.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88865531|gb|ABD56408.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 219

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
           F+L++D A + D  +   G DG +++   +L   E   + A  D+  ++  L  G G   
Sbjct: 3   FLLVEDNAELADSVVQRLGLDGHAVDHAGTLAEAEDCLAVAEYDLILLDVMLPDGDGRDR 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L      R   + P+I ++    +   +   D G DD + KP    E+ AR  A+ RR  
Sbjct: 63  LA---TWRGRLETPVIVLTARSQISDRVGALDQGADDYLTKPFDFSELEARCRAVLRRRG 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     T    VF         GE V  L  RE R+LE    N G  ++K+Q+   ++ 
Sbjct: 120 GAAKNEVTLGDAVFDPTAGTLRAGEQVVDLRNREIRLLEVFARNPGHILSKSQLMDRLFS 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V EN +E ++ +LR+KL +++G   +++ R  GY I
Sbjct: 180 -HDADVTENAIEVYVGRLRRKL-DEVGV-KIETVRGAGYRI 217


>gi|71066630|ref|YP_265357.1| OmpR family two-component transcriptional regulator [Psychrobacter
           arcticus 273-4]
 gi|71039615|gb|AAZ19923.1| probable two-component transcriptional response regulator (ompR
           family) [Psychrobacter arcticus 273-4]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D + + DG +      G+ ++ F+  +  E        D   ++   + KG+ + 
Sbjct: 4   ILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEMALQDGMFDAVLLD-LTLPKGDGMT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L      H   P++ I+   ++   +   ++G DD + KP    E++AR+ A+ RR + 
Sbjct: 63  VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVIARLQALMRRSQG 122

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S      G +      +    QG+   L  +E  ILE ++ +  +  ++  +   +YG 
Sbjct: 123 RSQPEVRYGEVAYQPHNQQVSYQGKTVELTIKEVAILEQMLTHPKQIHSRASLEDKLYG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + +E N +E HI  LRKKL N    D + +KR +GY ++
Sbjct: 182 WKQDIESNAIEVHIHHLRKKLGN----DFILTKRGIGYYLN 218


>gi|226330499|ref|ZP_03806017.1| hypothetical protein PROPEN_04417 [Proteus penneri ATCC 35198]
 gi|225201294|gb|EEG83648.1| hypothetical protein PROPEN_04417 [Proteus penneri ATCC 35198]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L++      F D G  ++     +  +   +    DV+ ++  L    E  +
Sbjct: 3   ILIIEDNILLRHHLSVQFRDAGHQVDAAEDAKEADSFIAEGTPDVAIVDLGL--PDEDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R ++  +P++ ++   S Q  +   ++G DD V KP H  EI+AR+ A+ RR +
Sbjct: 61  SLIRRWRENNITLPIMVLTARESWQEKVSALNAGADDYVTKPFHFEEIIARIQALMRRNM 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    ++  + GE   L   E  ILE LM N+ K V+K  +   +Y 
Sbjct: 121 GIASQTLAIEPFELDLSRKEFMISGEQIKLTAFEYTILETLMRNQNKVVSKDALMRQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK+  K   D V + R  GY  D
Sbjct: 181 -DAELKESHTIDVLMGRLRKKILEKYPDDVVVTVRGQGYRFD 221


>gi|218781860|ref|YP_002433178.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763244|gb|ACL05710.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 235

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 4/169 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   + L R IR  S VP+I ++        L   + G DD V KP   RE++ARV
Sbjct: 62  LMLPGADGVTLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARV 121

Query: 113 AAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            A+ RR     + A    GP+ +  +     V G+   + + E  +L   MA+ GK  ++
Sbjct: 122 KAVLRRGGEEPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
            ++ + I G   E  + N ++ HI  LRKKL   + G +P++S   +GY
Sbjct: 182 DELIAKIQGRTYEGYDRN-IDWHIKNLRKKLIAAQPGLEPIESVYGVGY 229


>gi|117919068|ref|YP_868260.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611400|gb|ABK46854.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 9/150 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128
            P+I ++        ++ F++G DD + KP H +E+LAR+ A+    + RL   + +   
Sbjct: 73  TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRLNNPSKQLSY 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +    +   V   ++ L   E R+L+  + +  K ++K Q+   +Y  FD+  E N
Sbjct: 133 GGVTLDEAEQTVSVGEHLYELTAMEFRLLKIFLMSPKKLLSKAQLTDKLYQ-FDDEKESN 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VVE +++ LRK    KLG   ++++R  GY
Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|18311314|ref|NP_563248.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|168205161|ref|ZP_02631166.1| response regulator [Clostridium perfringens E str. JGS1987]
 gi|168210364|ref|ZP_02635989.1| response regulator [Clostridium perfringens B str. ATCC 3626]
 gi|168213243|ref|ZP_02638868.1| response regulator [Clostridium perfringens CPE str. F4969]
 gi|168216703|ref|ZP_02642328.1| response regulator [Clostridium perfringens NCTC 8239]
 gi|182625784|ref|ZP_02953551.1| response regulator [Clostridium perfringens D str. JGS1721]
 gi|18145997|dbj|BAB82038.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|170663254|gb|EDT15937.1| response regulator [Clostridium perfringens E str. JGS1987]
 gi|170711562|gb|EDT23744.1| response regulator [Clostridium perfringens B str. ATCC 3626]
 gi|170715305|gb|EDT27487.1| response regulator [Clostridium perfringens CPE str. F4969]
 gi|177908940|gb|EDT71427.1| response regulator [Clostridium perfringens D str. JGS1721]
 gi|182381236|gb|EDT78715.1| response regulator [Clostridium perfringens NCTC 8239]
          Length = 230

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IRA S VP+I I+     +  L+ FD G DD V KP   ++++AR+ AI RR   
Sbjct: 61  EVCKVIRAKSCVPIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRRSTP 120

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N          G +++  D R+  V+ E+  L   E  IL  L +   K   + +I  
Sbjct: 121 CPNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIFTRDEIIE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            + G   ++  + V++SHI  LR K+
Sbjct: 181 LVLGDKSDSF-DRVIDSHIKNLRGKI 205


>gi|157150145|ref|YP_001450361.1| transcriptional regulatory protein CiaR [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157074939|gb|ABV09622.1| Transcriptional regulatory protein CiaR [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENNLSYGDV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V        V G+   L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 TVNLSTNTTLVNGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+     + + + R +GY
Sbjct: 192 VYVSKIRKKLKGTTFANNMQTLRSVGY 218


>gi|160942544|ref|ZP_02089792.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446160|gb|EDP23163.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii
           M21/2]
          Length = 236

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 83  AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP++E  +L  L A+ G+   K Q+   ++G   EA + 
Sbjct: 143 IGSTEFDYDAMTVTTDKESLALPKKEFLLLYKLAASPGRIFTKQQLMDEVWGYETEA-DP 201

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++L++   F+ V + R +GY +
Sbjct: 202 HTIEVHIGRIRERLKDNPDFEIV-TMRGIGYKV 233


>gi|120597039|ref|YP_961613.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120557132|gb|ABM23059.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
          Length = 219

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++   +    +D   +G DD + KP H  E+LAR+  + RR    ++N  +   +
Sbjct: 73  MPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGV 132

Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
            +  D +    V G V  L + E R+L YLM N  K V+K+++   IY   D+  + NV+
Sbjct: 133 SLDVDKQAVTNVDGAVIELTKIEYRLLHYLMVNPSKIVSKSELSERIYE-EDQIKDSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++++LR+    +LG D ++++R  GY +
Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217


>gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
          Length = 233

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 21/203 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           +VK+GY  +      + +G  +LE  E    + R D+  ++  L       LE+ R IR 
Sbjct: 21  MVKEGYEVV-----TAFDGREALEMFE----AERPDILILDLML--PEMDGLEVARTIRK 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAE 127
            S VP+I +S   S    +   + G DD + KP  +RE+ ARV AI RR  L + N  AE
Sbjct: 70  TSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDLTIENQEAE 129

Query: 128 TGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             P       +++ +D    +  GE   L  RE  +L +L  + G+ + +  +   ++G 
Sbjct: 130 AAPTEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREHLLETVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
           +D   +   V+  I +LR+K+ +
Sbjct: 189 YDYFGDVRTVDVTIRRLREKIED 211


>gi|319938113|ref|ZP_08012511.1| two-component system [Coprobacillus sp. 29_1]
 gi|319806634|gb|EFW03283.1| two-component system [Coprobacillus sp. 29_1]
          Length = 220

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  SQ+P+I ++   +    +     G DD + KP +   +L R+ A+ RR+   
Sbjct: 63  LLRELRKESQIPVIMVTSQNNETDEVLSMSFGADDYITKPYNPTLLLLRIEAVLRRMNHE 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N  +   + +  +    +   E   L + E  I++YL+ N+GK  ++ +I   ++   +
Sbjct: 123 VNVLKYHDLLLVPERGILKCHDESLILTKNEMLIMKYLIVNQGKIASREEIMMDLWD-SE 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           E V++N +  ++S+LR KLR+ LG+ D +++++ LGY
Sbjct: 182 EFVDDNTLTVNMSRLRNKLRS-LGYGDAIETRKGLGY 217


>gi|114564455|ref|YP_751969.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114335748|gb|ABI73130.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 79/150 (52%), Gaps = 9/150 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128
            P+I ++        ++ F++G DD + KP H +E+LAR+ A+    + R+  S+ +   
Sbjct: 73  TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRVNSSSKQLCY 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             + +  + +   V   ++ L   E R+L+  + +  K ++K Q+   +Y  FD+  E N
Sbjct: 133 AGVNLDENEQKVTVGEHIYELTSMEFRLLKIFLMSPKKLLSKQQLTDKLYQ-FDDEKESN 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VVE +++ LRK    KLG   ++++R  GY
Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|311695506|gb|ADP98379.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 228

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ R +RA + +P++ ++        +  F+ G DD + KP + RE++AR+ A+ RR+ 
Sbjct: 62  LEVLRELRAETHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALLRRIA 121

Query: 120 ---KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              K   N A T G +RV    R          L   E  +L+ L+A+ G  V KT +  
Sbjct: 122 WDQKTEVNAARTYGDLRVEPGHRRIYQNDVAMELTATEYEVLQVLLAHAGSVVRKTDLMQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYS 219
              G   EA +   ++ HIS LRKKL N    DP  +++ R LGYS
Sbjct: 182 WALGRRLEAYDRT-LDMHISNLRKKLGND---DPPRIETVRGLGYS 223


>gi|242373720|ref|ZP_04819294.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348688|gb|EES40290.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 219

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR +
Sbjct: 61  LEICRQIRQEYSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  +   I +  D     V G    L + E  +L  L  NR   + + QI   ++G 
Sbjct: 120 PQKDVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F+  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 179 FNSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218


>gi|294667833|ref|ZP_06733043.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602459|gb|EFF45900.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 227

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 1/158 (0%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +
Sbjct: 67  LDICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHR 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              + A    +++  D     V G    L + E R+L  L A  G+  ++ Q+   +Y  
Sbjct: 127 HDPHGAPAPGLQIDEDACRASVDGRTLDLTQVEFRLLRTLAAAPGRVYSREQLMGRLYAD 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               V +  V+SH+  LR+KL +  G D V S    GY
Sbjct: 187 H-RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGY 223


>gi|238754271|ref|ZP_04615628.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC
           29473]
 gi|238707518|gb|EEP99878.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC
           29473]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 7/163 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+ +    +P++ ++    +   +   +SG DD + KP    E+ AR+ A+ RR + V
Sbjct: 63  LARLRKRGQTLPVLLLTARTDVADRVKGLNSGADDYLTKPFELDELEARIRALLRRSVGV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    + G +    +G    +  +   L  RE  +L  LM  RG+ VAK Q+F  I+ L 
Sbjct: 123 TQQALQFGSLTYHDEGYFL-LDNKPLALTPRESAVLTTLMHRRGRPVAKQQLFEQIFTLS 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
           DEA  E+ +E ++ ++RKKL+   G D  + + R LGYS++ N
Sbjct: 182 DEANPES-IELYVHRVRKKLQ---GTDVAIITLRGLGYSLECN 220


>gi|223042407|ref|ZP_03612456.1| DNA-binding response regulator [Staphylococcus capitis SK14]
 gi|222444070|gb|EEE50166.1| DNA-binding response regulator [Staphylococcus capitis SK14]
          Length = 225

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 2/188 (1%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           EE L    +E+V+     ++  G    EL + ++    +P+I ++   +L      F SG
Sbjct: 36  EEALHFLEKENVAIAIVDIMMNGINGFELCKTLKEDYDIPVIMLTARDALSDKERAFLSG 95

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
            DD V KP   +E+L R+ A+ RR ++ + +  + G + +     +  V  +   LP +E
Sbjct: 96  TDDYVTKPFEVKELLFRIKAVLRRYQINAESELKLGNLTLNQPYMEINVDAKTINLPNKE 155

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            ++L  L++N      +  I   I+G FD   ++  V+ HI +LR+KL        + + 
Sbjct: 156 FQLLFLLVSNPKHIFTRNDIIEKIWG-FDYEGDDRTVDVHIKRLRQKLSRLGASISIHTV 214

Query: 214 RFLGYSID 221
           R  GY ++
Sbjct: 215 RGQGYKVN 222


>gi|169347039|ref|ZP_02865981.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169296722|gb|EDS78851.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 230

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IRA S VP+I I+     +  L+ FD G DD V KP   ++++AR+ AI RR   
Sbjct: 61  EVCKVIRAKSCVPIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRRSTP 120

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N          G +++  D R+  V+ E+  L   E  IL  L +   K   + +I  
Sbjct: 121 CPNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIFTRGEIIE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            + G   ++ +  V++SHI  LR K+
Sbjct: 181 LVLGDKSDSFDR-VIDSHIKNLRGKI 205


>gi|220929731|ref|YP_002506640.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220000059|gb|ACL76660.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 226

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 12/148 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S +P+I IS    + T +D    G DD + KP    E++ARV+A  RR   
Sbjct: 62  EILKEVRQFSDIPVIIISAKDMVGTKIDLLKMGADDYITKPFDLGEVVARVSANLRR--- 118

Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S+ + +T        + V +D +   V      L  +E  I+E L+ NR K   K  ++ 
Sbjct: 119 SHRKTQTEKELRYKDMTVNTDAKRVYVNNTELDLTAKEYGIVELLIKNRNKVFTKATLYE 178

Query: 176 AIYGLFDEAV-EENVVESHISKLRKKLR 202
            I+   D  + ++N V++HIS LR KL+
Sbjct: 179 TIWQ--DAYLGDDNAVKTHISNLRAKLK 204


>gi|113968960|ref|YP_732753.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114048902|ref|YP_739452.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113883644|gb|ABI37696.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890344|gb|ABI44395.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 9/150 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128
            P+I ++        ++ F++G DD + KP H +E+LAR+ A+    + RL   + +   
Sbjct: 73  TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRLNNPSKQLSY 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +    +   V   ++ L   E R+L+  + +  K ++K Q+   +Y  FD+  E N
Sbjct: 133 GGVTLDEAEQTVSVGEHLYELTAMEFRLLKIFLMSPKKLLSKAQLTDKLYQ-FDDEKESN 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VVE +++ LRK    KLG   ++++R  GY
Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|330831451|ref|YP_004394403.1| two-component system, regulatory protein [Aeromonas veronii B565]
 gi|328806587|gb|AEB51786.1| Two-component system, regulatory protein [Aeromonas veronii B565]
          Length = 218

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 8/151 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131
            P++ ++    L   ++  ++G DD + KP    E++ARV A+ RR    +++  E G +
Sbjct: 73  TPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAAGNASSILEIGGV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190
           R+         +G    L   E R+L YLM +RGK V+++++   IY   FD   + N V
Sbjct: 133 RLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYAQDFDR--DSNTV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  I ++RKK       D +++ R LGY I+
Sbjct: 191 EVFIGRIRKKTNP----DLIETVRGLGYRIN 217


>gi|307941515|ref|ZP_07656870.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseibium sp. TrichSKD4]
 gi|307775123|gb|EFO34329.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseibium sp. TrichSKD4]
          Length = 230

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R IR   +   +P+I ++        +    +G DD V KP    E++ARV AI R
Sbjct: 61  IELCRRIRGREETALLPVIMLTARGEESERIRGLSTGADDYVVKPFSVPELMARVRAILR 120

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   +V +N   +G I +  +        +   L   E R+LE+LM + G+  ++ Q+  
Sbjct: 121 RASPEVVSNLLRSGDIELDRETHRVRRSSKEIHLGPTEFRLLEFLMTSPGRVYSREQLLD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK L      DP+ + R  GY+ +
Sbjct: 181 GVWG-HDVYVDERTVDVHVGRLRKALNRGKAKDPIRTVRGAGYAFN 225


>gi|110801908|ref|YP_697454.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682409|gb|ABG85779.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 226

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP+I ++   S    L   + G DD V KP + + +LAR+A+I +R   S
Sbjct: 65  ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ET       ++      +   +GEV  L + E +IL  L+ N+GK V++  I   +
Sbjct: 124 GIEGETEIFNCRELKYNMSTSEVSFKGEVEELTKNESKILNILIRNKGKIVSRDNIIKTL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   +E +++N +  ++++LR+K+        + +KR  GY
Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223


>gi|296118440|ref|ZP_06837019.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968581|gb|EFG81827.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 230

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 20/200 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG +       EFE       R DV  +   L+  G    ++ + +RA
Sbjct: 21  LRKEGFEPIVAHDGKTALA----EFE-------RHDVDIVLLDLMLPGMSGTDVCKQLRA 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKV 121
            S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR         + 
Sbjct: 70  TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGEAAEVDEEF 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   E G +R+  +     V GE   +P +E  +LEYL+ N G+ + + Q+   I+G  
Sbjct: 130 EDQILEGGRVRMDVERHTVSVDGEPVSMPLKEFDLLEYLLRNTGRVLTRGQLIDRIWG-A 188

Query: 182 DEAVEENVVESHISKLRKKL 201
           D   +   ++ H+ +LR K+
Sbjct: 189 DYVGDTKTLDVHVKRLRSKI 208


>gi|188578223|ref|YP_001915152.1| DNA-binding response regulator [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522675|gb|ACD60620.1| DNA-binding response regulator [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 203

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 6/131 (4%)

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLP 150
           D G DD + KP    E+LAR  A+ RR       A + G +R+   G      G    L 
Sbjct: 63  DVGADDYLGKPFDTNELLARTRALLRRSAGRTQPALQAGALRLDPAGMSVRWHGRDLDLT 122

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           RRE  +L  LM  RG+ + + +I   +YG +DE V  N V+ H+ +LR+KL   +    +
Sbjct: 123 RREFALLWLLMEQRGRPIGRERIQQHLYG-WDEDVASNAVDVHVHQLRRKLSAAV----I 177

Query: 211 DSKRFLGYSID 221
              R +GY++D
Sbjct: 178 RIIRGIGYALD 188


>gi|153010837|ref|YP_001372051.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562725|gb|ABS16222.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 222

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 26/160 (16%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           ++VP+I ++   SL   +   D+G DD + KP    E+ AR+ A  RR   S+ R  T P
Sbjct: 71  NEVPVIILTANASLDGRIRGLDAGADDYLAKPFELSELEARIRAHLRR---SSQR--TAP 125

Query: 131 I------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +            R+FS G DP        L  +E  +LE L+   G  V+KT +   IY
Sbjct: 126 VVTCGLLRFDTNTRLFSLGDDP------LSLAPKEHAVLEQLLRRIGTTVSKTTLVQGIY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             FD   +EN +E +I +LRKKL        + + R LGY
Sbjct: 180 D-FDSETDENAIEIYIHRLRKKLEGSKA--EIVTLRGLGY 216


>gi|154250855|ref|YP_001411679.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154154805|gb|ABS62022.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 272

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   VP+I I+        +   D G DD V KP    E+LAR+ A+ R
Sbjct: 103 IELCRRLRGRPETRNVPIIMITARGEETDRIRGLDIGADDYVTKPFSMTELLARIRAVMR 162

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++  ++ +    G I +               L   E R+L++L+ + G+  ++ Q+  
Sbjct: 163 RIRPALTEDLVTFGDIVIDRAAHRVRRGDREVHLGPTEYRLLDHLIQHPGRVFSREQLLD 222

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  VE   V+ H+ +LRK L +K   DP+ + R  GYS+D
Sbjct: 223 TVWG-SDVYVEARTVDVHVGRLRKALNDKGEKDPIRTVRSAGYSLD 267


>gi|332975039|gb|EGK11946.1| two component response regulator [Psychrobacter sp. 1501(2011)]
          Length = 227

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 15/224 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVL 61
           +LI+D + + +G I    + G+ ++ F+  +  E  LQ S  + V        G G  VL
Sbjct: 5   LLIEDDSTIAEGLILGLKNHGIMVDWFSDAKLGELALQESMFDAVLLDLTLPNGDGMSVL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R  +  + V +I   D  ++   +   ++G DD + KP    E++AR+ A+ RR   
Sbjct: 65  KSWRDKKIDTPVLIITARD--AIANRVAGLNAGADDYLVKPFALDEVIARLQALMRR--- 119

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  R       G +  +   +    QG+   L  +E  ILE +M    K   +  +   +
Sbjct: 120 SQGRIYPEIRFGELVYYPHSQQVTYQGQSIDLTTKEVAILEQMMTQPQKIHNRASLEDKL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           YG + + +E N +E HI  LRKKL N    D + +KR +GY ++
Sbjct: 180 YG-WQQDIESNAIEVHIHHLRKKLGN----DFILTKRGIGYYLN 218


>gi|291515446|emb|CBK64656.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Alistipes shahii WAL
           8301]
          Length = 225

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++LE   + R  S   +I IS   SL   ++  + G DD ++KP H  E+ AR+ +
Sbjct: 57  GSGLRLLE--ELKRRRSPAAVIIISARDSLDDKIEGLELGADDYLSKPFHLAELSARIRS 114

Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR +     + + G +R++ D R  EV G    L R+E  IL Y M+     V KT +
Sbjct: 115 VLRRHQRGGYESLDAGNVRLWPDSRRVEVAGREVELLRKEYDILHYFMSRPNHTVDKTAL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
              ++G   D+A   + V + +  LR+KL +
Sbjct: 175 AEGVWGDHIDQADNFDFVYAQMKNLRRKLHD 205


>gi|223936259|ref|ZP_03628172.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895121|gb|EEF61569.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 10/163 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +  SQVP++ ++    +   ++ F++G DD + KP    E+L RV A+ RR   +
Sbjct: 63  LKRLRKQSSQVPVLVLTARDGMAEKIENFEAGADDYLTKPFAFAELLVRVKALLRR--GT 120

Query: 123 NNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            NR+     G + +    +     G+   L  +E  +LEYL AN G+ +++T I   ++ 
Sbjct: 121 ANRSSVLHVGDLEIDRLTQQVRRGGKKIDLTSKEYGLLEYLAANAGRVLSRTMIVEHVW- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE+ E   N+V+ ++  LR K+ +      + + R +GYS+
Sbjct: 180 --DESFEGLTNIVDVYVRHLRSKVDSGYPCKLIRTVRGVGYSV 220


>gi|317470771|ref|ZP_07930155.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901760|gb|EFV23690.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 227

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 83/159 (52%), Gaps = 1/159 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++    L+  L     G D+ + KP H   + AR+  + RR + 
Sbjct: 62  EICRSIRKISTVPVLVLTSRDQLKDELHALKLGADEYLTKPCHKDRLTARILNLLRRYED 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +  AE   +R+        + G+   LP  + +I+E L+ + G+ V K+ +   ++G  
Sbjct: 122 RDRFAEIQGVRLDRQTFTVYMNGQSAVLPENQGKIMELLLLHAGETVTKSMLSERLWG-T 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E ++EN ++ ++++++K +R       ++++R +GY +
Sbjct: 181 TEYIDENALQVNMTRIKKTIRKLHIPYRIETRRGIGYCL 219


>gi|241888630|ref|ZP_04775937.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
 gi|241864653|gb|EER69028.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
          Length = 223

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 2/157 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           + R+  + +  P+I ++   +L+  +   DSG DD + KP    E+ AR+  + RR   +
Sbjct: 63  IKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNYGL 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + N  +   I +    +     GE   L  +E  +LEYLM N+   +++ QI + ++  +
Sbjct: 123 ATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D     N+V+  I  +RKKL N      + +KR LGY
Sbjct: 182 DYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGY 218


>gi|229815480|ref|ZP_04445812.1| hypothetical protein COLINT_02528 [Collinsella intestinalis DSM
           13280]
 gi|229809013|gb|EEP44783.1| hypothetical protein COLINT_02528 [Collinsella intestinalis DSM
           13280]
          Length = 229

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS----LEFEEWLQSSAREDVSAIEAFLIGKG 57
            +L++D  L+ D    L    G S++  ++    +E      S+    +  ++  L  +G
Sbjct: 5   ILLVEDDPLIVDALTELLTSSGYSVDTADTQTRAIELATGAGSAGTYQLVLLDVTL-REG 63

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
                   +       P+I ++       T+     G DD V KP   RE+LAR+AA  R
Sbjct: 64  NGFAVCAAVKETSPSTPVIFLTASDDEFNTVTGLTMGADDYVAKPFRPRELLARIAATIR 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R + S      G IR+ +D    E +G    L   E R+L     N GK V++  I  A+
Sbjct: 124 RSQPSRRIVSLGDIRIDTDRAYVERKGVELTLSALEYRLLLLFATNPGKLVSRDMIRDAL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +      +EEN +  +I    K+LR+K+  DP     + + R LGY
Sbjct: 184 WDSAGTYIEENTLSVYI----KRLRDKIEDDPSRPELIQTVRGLGY 225


>gi|329726494|gb|EGG62957.1| heme response regulator HssR [Staphylococcus epidermidis VCU144]
          Length = 224

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 8/197 (4%)

Query: 28  GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87
           G  SL+F E    +   D++ ++  +   G    EL + ++    +P+I ++   +L   
Sbjct: 34  GEASLDFLE----NKNVDIAIVDIMM--SGMDGFELCQTLKDDYHIPVIMLTARDALSDK 87

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEV 146
              F SG DD V KP   +E+L R+ A+ RR ++ ++N  + G + +     +  V  + 
Sbjct: 88  ERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQINADNELQLGNLILNQSYMEITVGSKT 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             LP +E ++L  L +N      +  I   I+G FD   ++  V+ HI +LR++L     
Sbjct: 148 MNLPNKEFQLLFLLASNPKHIFTRDYIIEKIWG-FDYEGDDRTVDVHIKRLRQRLSKLKS 206

Query: 207 FDPVDSKRFLGYSIDWN 223
              + + R  GY +D N
Sbjct: 207 SISIQTVRGQGYRVDQN 223


>gi|299133545|ref|ZP_07026739.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591381|gb|EFI51582.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 229

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 8/130 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD+G DD V KP H  E+LAR+ A+ RR    + +    GP+ + +      V G    +
Sbjct: 96  FDAGADDYVAKPFHLEEVLARIRALLRRSTGHAQSELTCGPVVLDTRTGRVTVDGNPIKM 155

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++T++   +Y   FD   + N +E  + ++RK    KL  D
Sbjct: 156 TSHEYRLLAYLMHHAGRVVSRTELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLDVD 209

Query: 209 PVDSKRFLGY 218
            + + R LGY
Sbjct: 210 IIQTVRGLGY 219


>gi|187924179|ref|YP_001895821.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187715373|gb|ACD16597.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 219

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 6/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R+  +   VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR +  
Sbjct: 63  LKRLRDSGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQGR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S  +     + V    +  EV     PL  RE  IL  L+ N+G   +++++  ++YG +
Sbjct: 123 SVEQIRYQDLTVNPAAQTVEVGTTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E +E N +E H+S LRKKL  KL    + + R +GY ++
Sbjct: 182 QEEIESNAIEVHVSNLRKKLGAKL----IKTVRNIGYVVE 217


>gi|255314146|ref|ZP_05355729.1| two-component response regulator [Clostridium difficile QCD-76w55]
          Length = 234

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 22/195 (11%)

Query: 40  SSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91
           SS +E +S+ E  +I        G G    EL + IR  SQVP+I ++        +   
Sbjct: 35  SSGKEMISSNEYSMILLDVTLPDGTG---YELCKYIRGFSQVPIIFLTACDEEVNIVMGL 91

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--- 148
           D G DD + KP   RE+++R+ A+ RR    N   E   I  F D     ++  V+    
Sbjct: 92  DIGGDDYITKPFRIRELISRIKAVLRR--KGNTSEENKKILKFGDLSIYTLEARVYKNDK 149

Query: 149 ---LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L   E ++L  L+ N+   +++TQI   ++ +  + V +N +  +I +LR+K+ + L
Sbjct: 150 EIFLTSVEYKLLLILIQNKNTVLSRTQILEKLWDVTYDFVNDNTLTVYIKRLREKIGDDL 209

Query: 206 GFDP--VDSKRFLGY 218
             +P  +++ R +GY
Sbjct: 210 C-EPIYIETVRGIGY 223


>gi|219847488|ref|YP_002461921.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541747|gb|ACL23485.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 226

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 11/137 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPI----RVFSDGRDPEVQG 144
           F+SG DD + KP    E+LARV A+ RR    + N+    G I    R ++  R  E + 
Sbjct: 91  FESGADDYLVKPFAFEELLARVRALGRRFNPNLGNDELRIGTIVLDLRSYT-ARRGERRL 149

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           ++ P    E R+LEYLM N G+ + + QI   ++  F+  V+  +V+ ++S LR+KL   
Sbjct: 150 DLTPT---EWRLLEYLMRNAGQTLTRQQILDYVWS-FEHDVQPQMVDVYVSYLRRKLNAP 205

Query: 205 LGFDPVDSKRFLGYSID 221
              DP+ + R +GY ++
Sbjct: 206 GEADPIVTVRGIGYRLE 222


>gi|110801456|ref|YP_699593.1| two-component response regulator [Clostridium perfringens SM101]
 gi|110681957|gb|ABG85327.1| two-component response regulator [Clostridium perfringens SM101]
          Length = 233

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IRA S VP+I I+     +  L+ FD G DD V KP   ++++AR+ AI RR   
Sbjct: 64  EVCKVIRAKSCVPIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRRSTP 123

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N          G +++  D R+  V+ E+  L   E  IL  L +   K   + +I  
Sbjct: 124 CPNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIFTRDEIIE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            + G   ++  + V++SHI  LR K+
Sbjct: 184 LVLGDKSDSF-DRVIDSHIKNLRGKI 208


>gi|78043342|ref|YP_361360.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995457|gb|ABB14356.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 236

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 9/147 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  SQ+P+I ++        L  F+ GVDD V KP   RE+ AR+  I +RL+
Sbjct: 62  IEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLE 121

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 E     G + ++   R+  ++G+   L   E ++LE  + N GK  ++ ++   
Sbjct: 122 AKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEY 181

Query: 177 IYGLFDEAVE--ENVVESHISKLRKKL 201
             G   EA E  E  +++HIS LRKK+
Sbjct: 182 AIG---EAYEGYERTIDTHISNLRKKI 205


>gi|23501491|ref|NP_697618.1| DNA-binding response regulator [Brucella suis 1330]
 gi|161618578|ref|YP_001592465.1| two component transcriptional regulator [Brucella canis ATCC 23365]
 gi|254703943|ref|ZP_05165771.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|260566808|ref|ZP_05837278.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str.
           40]
 gi|261754595|ref|ZP_05998304.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|23347396|gb|AAN29533.1| DNA-binding response regulator [Brucella suis 1330]
 gi|161335389|gb|ABX61694.1| two component transcriptional regulator, winged helix family
           [Brucella canis ATCC 23365]
 gi|260156326|gb|EEW91406.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str.
           40]
 gi|261744348|gb|EEY32274.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
          Length = 229

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR    +++  
Sbjct: 68  RSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEF 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y   FD   
Sbjct: 128 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + +LRK    K+G D +++ R +GY +
Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 216


>gi|309800065|ref|ZP_07694260.1| transcriptional regulatory protein CiaR [Streptococcus infantis
           SK1302]
 gi|308116316|gb|EFO53797.1| transcriptional regulatory protein CiaR [Streptococcus infantis
           SK1302]
          Length = 223

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V     +  V   V  L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 TVNLSTNEVRVNDTVVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+  +  + + + R +GY
Sbjct: 192 VYVSKVRKKLKGSVFAENLQTLRSVGY 218


>gi|298291170|ref|YP_003693109.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927681|gb|ADH88490.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 219

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 11/160 (6%)

Query: 65  RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA   V P+I ++    +   ++   +G DD + KP    E+ AR+ ++ RR   + 
Sbjct: 64  RALRAAGNVTPVIILTALDQVSDRIEGLTAGADDYLVKPFDLDELSARIGSVARRYSGNP 123

Query: 124 N---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           N   R  +  I +    R    +G    L  RE  +LE  +A  G+ ++K Q+   +Y  
Sbjct: 124 NPIIRHHSLDIDIAR--RSVRREGRPVQLTAREWALLEAFLARPGQVLSKAQLEEKLYD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD  VE N +E H+S+LRK    KLG D ++++R LGY +
Sbjct: 181 FDAEVESNTIEVHVSRLRK----KLGADLIETERGLGYRL 216


>gi|167747202|ref|ZP_02419329.1| hypothetical protein ANACAC_01916 [Anaerostipes caccae DSM 14662]
 gi|167654162|gb|EDR98291.1| hypothetical protein ANACAC_01916 [Anaerostipes caccae DSM 14662]
          Length = 226

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 18/151 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L + IR+ S +P+I IS   + Q  +D    G DD + KP    E LAR+ +  RR   
Sbjct: 62  QLLKEIRSCSDLPVIVISARVTTQNKIDLLRLGADDYITKPFDLDETLARIESNLRRSKL 121

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  LK      +TG +  +       ++G    L  +E RILE LM    K  +K 
Sbjct: 122 QTFQKKVLKFQELTLDTGSLTAY-------LKGVELSLTAKEFRILELLMRYPDKIFSKA 174

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            +F +I+G  +   E+N +  HIS LR KL+
Sbjct: 175 NLFQSIWG-SEYLSEDNTLNVHISHLRNKLK 204


>gi|222106554|ref|YP_002547345.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737733|gb|ACM38629.1| two component response regulator [Agrobacterium vitis S4]
          Length = 218

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 15/166 (9%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA  ++VP++ ++   S+++ ++  D G DD + KP    E+LARV A+ RR +
Sbjct: 61  EVVRTLRASGNKVPVLLLTALDSIRSRVEGLDEGADDYLVKPFDLDELLARVRALARRYE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               R ET  IR  +   DP        G    +  +E  +L+ LM   G+ V K+ I  
Sbjct: 121 ---GRTET-LIRCGNVELDPSAMIARQNGTPLHVAGKEFHLLKLLMERAGRYVTKSDIEY 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A+Y +    VE N +E  I  LRK    KLG D + S R +GY ++
Sbjct: 177 ALYDI-SAMVESNTIEVTIYSLRK----KLGADFIKSIRGVGYMVE 217


>gi|332186744|ref|ZP_08388486.1| response regulator [Sphingomonas sp. S17]
 gi|332013077|gb|EGI55140.1| response regulator [Sphingomonas sp. S17]
          Length = 230

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 17/171 (9%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L +   IRA     P++ +S   ++   +D   +G DD + KP    E+ AR+ A+ RR 
Sbjct: 62  LAMVSAIRAAGISTPVLILSALATVDDRVDGLKAGADDYLCKPFSFAELSARIEALVRR- 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEV---------QGEVFPLPRRERRILEYLMANRGKRVAK 170
              ++RA + P R      D E+          G++ P+  RE  +LE+L  + G+ V +
Sbjct: 121 ---SDRAASEPTRTKLSVGDLEIDLLARTVTRAGKLIPVGAREFNLLEFLARHAGQVVTR 177

Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           T +   I+   FD     NVV+ HI +LR+KL    G   + + R  GY +
Sbjct: 178 TMMLEKIWNYHFDPG--SNVVDVHIGRLRRKLEEGFGTPILHTVRGAGYRL 226


>gi|317473596|ref|ZP_07932885.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316898886|gb|EFV20911.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 226

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 18/151 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L + IR+ S +P+I IS   + Q  +D    G DD + KP    E LAR+ +  RR   
Sbjct: 62  QLLKEIRSCSDLPVIVISARGTTQNKIDLLRLGADDYITKPFDLDETLARIESNLRRSKL 121

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  LK      +TG +  +       ++G    L  +E RILE LM    K  +K 
Sbjct: 122 QTFPKKVLKFQELTLDTGSLTAY-------LKGVELSLTAKEFRILELLMRYPDKIFSKA 174

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            +F +I+G  +   E+N +  HIS LR KL+
Sbjct: 175 NLFQSIWG-SEYLSEDNTLNVHISHLRNKLK 204


>gi|296536465|ref|ZP_06898560.1| DNA-binding response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296263209|gb|EFH09739.1| DNA-binding response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 258

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ +S     Q  +  F  G DD + KP   +E++AR+ AI RR K  S      GP
Sbjct: 82  ETPVLILSGLSRPQAKVKAFGMGADDFITKPFDQQELMARIQAIIRRAKGFSQPTLSVGP 141

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    RD  V      L  +E  ILE L+  +G  + K    + +YG  DE  E  ++
Sbjct: 142 LTLNLGSRDVRVNDREVHLTGKEYAILELLVLRKGLVLTKEVFLNHLYGGIDEP-EAKII 200

Query: 191 ESHISKLRKKL 201
           +  I KLRKKL
Sbjct: 201 DVFICKLRKKL 211


>gi|225567971|ref|ZP_03776996.1| hypothetical protein CLOHYLEM_04044 [Clostridium hylemonae DSM
           15053]
 gi|225163259|gb|EEG75878.1| hypothetical protein CLOHYLEM_04044 [Clostridium hylemonae DSM
           15053]
          Length = 240

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R I+ +  VP+I ++        +   D G DD + KP   RE+++R+ ++ RR   
Sbjct: 71  DICRKIKRYHNVPVIFLTACDEEANVVMGLDIGADDYIVKPFRIRELISRIRSVLRRY-- 128

Query: 122 SNNRAETGPIRVFSDG--RDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQI 173
            ++R +  P  V+  G  R    +G+V+       L   E ++L +L+ + G+ V + Q+
Sbjct: 129 -DSRQDIRPASVYCAGDIRVLTAEGKVYCKEEEICLSALEYKLLLFLIRHEGQIVTREQL 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            S IY +  E V +N +  +I +LR KL     G + + + R LGY+I
Sbjct: 188 LSHIYDIAGEYVNDNTLTVYIKRLRDKLETDTEGPEIIRTVRGLGYTI 235


>gi|150018151|ref|YP_001310405.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904616|gb|ABR35449.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 220

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
             L + IR+    P+I ++     Q  +     G DD ++KP    E+ ARVAA  RR  
Sbjct: 60  FSLCKEIRSLVDCPIIFLTAKTMEQDIVMGLSIGGDDYISKPFSIGELRARVAAHLRREH 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N      I+     ++     E+ P  + E  I EYL  N G+  +K +I+ +++G
Sbjct: 120 REKQNAFSISDIKFNITAKEAYYNEELVPFTKSEYNICEYLALNHGQVFSKERIYESVFG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            FD   +   +  HI  +R K + K+G +P+++   +GY
Sbjct: 180 -FDGNSDTTAIVEHIKNIRNKFK-KVGINPIETVWGIGY 216


>gi|331092175|ref|ZP_08341005.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401947|gb|EGG81521.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 225

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  SQVP+I ++     +  L  FD GVD+ + KP   + ++ARV AI RR  V
Sbjct: 65  QVCREVRQVSQVPIIMLTARADEKDELQGFDLGVDEYIAKPFSPKILVARVEAILRRTNV 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    + G I +        +  +   L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 LFSEESIDAGGIVIDKTAHLVTIDNQPIELSYKEFELLSYFVENQGIALSREKILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL +K
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGDK 208


>gi|322388071|ref|ZP_08061677.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141092|gb|EFX36591.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 223

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGDL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V     + +VQ     L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 TVNLSTNEVKVQDASVELLGKEFELLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+     + + + R +GY
Sbjct: 192 VYVSKVRKKLKGSAFAENLQTLRSVGY 218


>gi|255658536|ref|ZP_05403945.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
           20544]
 gi|260849340|gb|EEX69347.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
           20544]
          Length = 230

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 7/166 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + + + +R  S +P+I ++    ++  +   D G DD + KP    E++AR+    R+  
Sbjct: 64  MTICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHV 123

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N       R +   + ++    + EV GE   L ++E  +LEY+M N+   + + QI 
Sbjct: 124 PDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D + + NVV+ +I  LR KL ++     + + R +GY++
Sbjct: 184 EKVWG-YDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGYAV 228


>gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 234

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 29/223 (13%)

Query: 10  LVKDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           LVK+GY   +A  G+DG  LE F S              +  ++  L GK      + + 
Sbjct: 22  LVKEGYETEVAYNGEDG--LEKFASFS----------PHIIVLDLMLPGKDG--FSVCKE 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR+ S VP++ ++   S    +   + G DD V KP  +RE+LAR+ A+ RR+ +S   +
Sbjct: 68  IRSQSSVPILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALLRRVNLSGQDS 127

Query: 127 ETGP----IRVFSDG----RDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +      I  ++D     +  EV  QG+   L  RE ++  YL+  +G+ +++ ++   
Sbjct: 128 SSSEKDEDILKYNDVEINLKTAEVKKQGQAIDLTYREFQLFVYLVKRQGEVISRERMIEE 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           ++G +D   E+  V+  I +LR+KL +  G    + +KR +GY
Sbjct: 188 VWG-YDFIGEDRTVDVTIRRLREKLEDDPGSPSYIMTKRGMGY 229


>gi|163867915|ref|YP_001609119.1| two-component system regulatory protein [Bartonella tribocorum CIP
           105476]
 gi|161017566|emb|CAK01124.1| two-component system regulatory protein [Bartonella tribocorum CIP
           105476]
          Length = 222

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 22/139 (15%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEV 142
            D+G DD V KP H  E++AR+ A+ RR        L   N   +T   RVF D      
Sbjct: 91  IDAGADDYVVKPFHLEEVMARLRALIRRTTGHATSALCCGNVLLDTKTSRVFVD------ 144

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201
            G++  L   E R+L YLM +  + +++T++   +Y   FD+  + N VE  + +LRK  
Sbjct: 145 -GQLIKLTSYEFRLLSYLMHHCDRVISRTELTEHLYDQDFDK--DSNTVEVFVGRLRK-- 199

Query: 202 RNKLGFDPVDSKRFLGYSI 220
             KLG D +++ R +GY +
Sbjct: 200 --KLGVDLIETIRGMGYRV 216


>gi|153003289|ref|YP_001377614.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026862|gb|ABS24630.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 231

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 7/134 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146
           F+ G DD V KP   RE++ R+ A+ RR            + GPIRV  D     V GE 
Sbjct: 94  FEVGADDYVTKPFSVRELVLRLKALARRTGAGRPAERPPEQVGPIRVDVDAHRAFVDGEE 153

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L   E R+L  LMA  G+  ++ Q+   ++ +  E VE   V++H+ +LR+KL +  G
Sbjct: 154 VQLTPLEFRLLTMLMARLGRVQSREQLLEDVWEMSSE-VETRTVDTHVKRLREKLGS--G 210

Query: 207 FDPVDSKRFLGYSI 220
            D +++ R +GY +
Sbjct: 211 RDLLETVRGIGYRL 224


>gi|317054847|ref|YP_004103314.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447116|gb|ADU20680.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 234

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 21/199 (10%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67
           L KDGY  +   DG  ++  FN+L          + D+  ++  L G  G +V    R I
Sbjct: 23  LEKDGYGVILAHDGEEAVVKFNAL----------KPDIILLDIMLPGIDGWQVC---REI 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S VP+I I+        +   + G DD + KP   +E++AR+ A+YRR+  S+  +E
Sbjct: 70  RKKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQSSAESE 129

Query: 128 TGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              ++     V     +  V G+V   P +E  +L +L +N  +   + Q+   ++G F+
Sbjct: 130 IKEVKYDKLSVNMTRYELRVNGQVMDTPPKELELLFHLASNPNRVYTRDQLLDEVWG-FE 188

Query: 183 EAVEENVVESHISKLRKKL 201
              +   ++ H+ +LR+KL
Sbjct: 189 YYGDSRTIDVHVKRLREKL 207


>gi|254975018|ref|ZP_05271490.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092407|ref|ZP_05321885.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255516824|ref|ZP_05384500.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649926|ref|ZP_05396828.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683080|ref|YP_003214365.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686678|ref|YP_003217811.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520011|ref|ZP_07406358.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260209243|emb|CBA62540.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212694|emb|CBE03775.1| two-component response regulator [Clostridium difficile R20291]
          Length = 241

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 22/195 (11%)

Query: 40  SSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91
           SS +E +S+ E  +I        G G    EL + IR  SQVP+I ++        +   
Sbjct: 42  SSGKEMISSNEYSMILLDVTLPDGTG---YELCKYIRGFSQVPIIFLTACDEEVNIVMGL 98

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--- 148
           D G DD + KP   RE+++R+ A+ RR    N   E   I  F D     ++  V+    
Sbjct: 99  DIGGDDYITKPFRIRELISRIKAVLRR--KGNTSEENKKILKFGDLSIYTLEARVYKNDK 156

Query: 149 ---LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L   E ++L  L+ N+   +++TQI   ++ +  + V +N +  +I +LR+K+ + L
Sbjct: 157 EIFLTSVEYKLLLILIQNKNTVLSRTQILEKLWDVTYDFVNDNTLTVYIKRLREKIGDDL 216

Query: 206 GFDP--VDSKRFLGY 218
             +P  +++ R +GY
Sbjct: 217 C-EPIYIETVRGIGY 230


>gi|303247363|ref|ZP_07333636.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302491277|gb|EFL51166.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 225

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 95/188 (50%), Gaps = 8/188 (4%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGV 95
           +L +    DV  ++  L   G   L + + IR A ++ P++ ++   S++  ++  ++G 
Sbjct: 38  FLAAEGPYDVMIVDRML--PGLDGLAIVKTIRGAGTKTPILFLTTRSSIEDRVEGLEAGG 95

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           DD + KP    E+LARV A+ RR  +++   +     + +    R     G    L   E
Sbjct: 96  DDYLVKPFAFSELLARVQALARRPPLADVTTQLRIADLELDLLTRTASRAGHSLDLKPLE 155

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
            ++LEYL+ N G+ V +T +   ++   FD   + NVVE++IS+LR K+    G D + +
Sbjct: 156 FKLLEYLVRNAGRIVTRTMLLEKVWDFHFDP--QTNVVETNISRLRAKVDRGFGCDLIHT 213

Query: 213 KRFLGYSI 220
            R  GY +
Sbjct: 214 VRGAGYML 221


>gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
 gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
          Length = 234

 Score = 65.9 bits (159), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 28/220 (12%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL  +GY   +  DG S L   N   FE  +       +  +E            L R+ 
Sbjct: 34  ALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGLEL-----------LKRLR 82

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
            A + VP++ ++   +    +   D+G DD + KP    E+ AR+ A+ RR   S NR E
Sbjct: 83  AAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRR---SFNRPE 139

Query: 128 TGPIR----VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             P+     +  D  + +V  QG    LPR+E  +L  L+A  G+ + + ++   +YG +
Sbjct: 140 --PVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG-W 196

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE VE N +E HI  LRKK   +L    + + R +GY +D
Sbjct: 197 DEDVESNALEVHIHHLRKKFFPEL----IRTVRGVGYLVD 232


>gi|238923834|ref|YP_002937350.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
 gi|238875509|gb|ACR75216.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
          Length = 226

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 4/147 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR  S+VP+I ++     +  L+ FD G D+ ++KP   + ++ARV A+ RR  
Sbjct: 64  FEVCREIRQTSKVPIIMLTAKGDERDELNGFDIGADEYISKPFSPKILVARVNALLRRAN 123

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                A   E G I +        + G    L  +E  +L+Y M+N+G  + + +I  ++
Sbjct: 124 KLGKEAVISEAGGIVMDKTAHTVAIDGRNIELSVKEFELLDYFMSNQGIALTRERILDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +  +D   +   +++H+ KLR K+  K
Sbjct: 184 WS-YDYFGDARTIDTHVKKLRSKMGAK 209


>gi|222099244|ref|YP_002533812.1| Response regulator [Thermotoga neapolitana DSM 4359]
 gi|221571634|gb|ACM22446.1| Response regulator [Thermotoga neapolitana DSM 4359]
          Length = 233

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 2/150 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGP 130
             P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR   + N +   G 
Sbjct: 82  NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKAENKNVKLVCGD 141

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + +  R     G+   L ++E +ILEYLM N+ + V K ++   ++  FD+ V  + +
Sbjct: 142 LILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS-FDDTVFSDTL 200

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            SHI  LRKK+        + + R +GY +
Sbjct: 201 RSHIKNLRKKIDRGFKKKIIHTVRGIGYVV 230


>gi|91775069|ref|YP_544825.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91709056|gb|ABE48984.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 233

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 12/166 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+IRA SQ+P+I ++        +   + G DD ++KP + RE++AR+ AI RR+ V + 
Sbjct: 65  RLIRASSQIPVIMLTAKGDEIDRIVGLELGADDYLSKPFNPRELVARLRAIQRRVVVRDE 124

Query: 125 RAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +           G I ++   R  E +GE   +   E  +LE L  + G  V+K ++F
Sbjct: 125 ALQNHHNKPSITRVGKIAIYPSERIIEWKGEPLDITTSEYALLEVLARHAGHVVSKAELF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
           +   G   E+  +  V+ H+S LR+KL   + G  P+ + R +GY 
Sbjct: 185 TQALGRA-ESRYDRSVDVHVSNLRQKLGLLEDGRSPIQTVRGVGYQ 229


>gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 226

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 8/182 (4%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF+ +   +   +    D +AI+  L+     G    ++ + +RA S VP+I ++   S
Sbjct: 24  EGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSGTDVCKRLRAVSSVPVIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRD 139
               +   + G DD V KP   RE++AR+ A+ RR    ++ S+    +G I +  +   
Sbjct: 84  EIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGETIEESDEILGSGRIHMDVERHT 143

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             V GE   +P +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ HI +LR 
Sbjct: 144 VTVDGEEISMPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHIKRLRS 202

Query: 200 KL 201
           K+
Sbjct: 203 KI 204


>gi|148652503|ref|YP_001279596.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571587|gb|ABQ93646.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 224

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 105/224 (46%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D + + DG +      G+ ++ F+  +  E        D   ++   + KG+ + 
Sbjct: 4   ILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLD-LTLPKGDGMT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L      H   P++ I+   ++   +   ++G DD + KP    E++AR+ A+ RR   
Sbjct: 63  VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRR--- 119

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  R +     G +      +    QG++  L  +E  ILE ++ +  +  ++  +   +
Sbjct: 120 SQGRCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           YG + + +E N +E HI  LRKKL N    D + +KR +GY ++
Sbjct: 180 YG-WQQDIESNAIEVHIHHLRKKLGN----DFILTKRGIGYYLN 218


>gi|262282356|ref|ZP_06060124.1| transcriptional regulatory protein CiaR [Streptococcus sp.
           2_1_36FAA]
 gi|262261647|gb|EEY80345.1| transcriptional regulatory protein CiaR [Streptococcus sp.
           2_1_36FAA]
          Length = 224

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V        V G+   L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 TVNLSTNTTLVNGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+     + + + R +GY
Sbjct: 192 VYVSKIRKKLKGTTFANNMQTLRSVGY 218


>gi|163791368|ref|ZP_02185779.1| hypothetical protein CAT7_10460 [Carnobacterium sp. AT7]
 gi|159873338|gb|EDP67431.1| hypothetical protein CAT7_10460 [Carnobacterium sp. AT7]
          Length = 222

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 16/172 (9%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VLE  R     +Q P++ ++   +++  +D  D G DD + KP    E+LAR+ A+ 
Sbjct: 59  GMEVLEKLR--SEGNQTPILLLTAKSAIENRIDGLDLGADDYLTKPFAMGELLARIRAMT 116

Query: 117 RR---LKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR   L+ +N   E       I   S+G+D         L  +E +IL+ LM N  +  +
Sbjct: 117 RRKTVLQANNLTFEDLELNKDIMRISNGQDE------IKLSNKECQILQLLMENPKQIFS 170

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             Q+   I+G +D  +E N +  H+S LRKKL        + + R +GYS++
Sbjct: 171 ADQMIERIWG-WDSDIEMNSIWVHLSNLRKKLAELDVHVKIVATRGVGYSLE 221


>gi|149378109|ref|ZP_01895829.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
 gi|149357594|gb|EDM46096.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
          Length = 226

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 13/194 (6%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDS 93
           +E +  +A ED   +    +  G   L + + +RA  +QVP++ +S    +   ++    
Sbjct: 34  KEGMMMAASEDYDIMIVDRMLPGMDGLSIIKTVRATGNQVPVLILSALGDVDDRVEGLRG 93

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVF 147
           G DD + KP    E+LAR+ ++ RR + S   AET  +   +D       R  +  G   
Sbjct: 94  GGDDYLTKPFSFTELLARIESLVRRNRQS---AETETVLRVADLEMDLLARTVKRAGHNI 150

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG 206
            +  RE R+LEYLM N G+ V +T +   ++   FD   + NV++ HIS+LR K+  +  
Sbjct: 151 DVQPREFRLLEYLMRNAGQVVTRTMLLEKVWDYHFDP--QTNVIDVHISRLRAKIDKEFE 208

Query: 207 FDPVDSKRFLGYSI 220
              + + R  GY +
Sbjct: 209 TPLLQTIRGAGYML 222


>gi|319408243|emb|CBI81896.1| two-component system regulatory protein [Bartonella schoenbuchensis
           R1]
          Length = 222

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP H  E++AR+ A+ RR    + N    G + + +      V G++  L
Sbjct: 91  IDAGADDYVVKPFHIEEVIARLRALIRRAAGHATNSLSCGSVLLDTKTSRVFVDGQLIKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM +  + V++T++   +Y   FD+  + N +E  + +LRK    KLG D
Sbjct: 151 TSHEFRLLSYLMHHCDQIVSRTELIEHLYDQDFDK--DSNTIEVFVGRLRK----KLGVD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R +GY +
Sbjct: 205 LIETVRGMGYRV 216


>gi|312197895|ref|YP_004017956.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229231|gb|ADP82086.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 248

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 7/141 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+    S VP++ +S   +L   L    +G DD + KP    E++AR+  I RR  V   
Sbjct: 90  RLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRRGVLTE 149

Query: 125 RA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI--YGL 180
            +    G +R+  D R   V G    L   E ++L +L+ N G+ V++ QI   +  YG 
Sbjct: 150 ASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVWDYG- 208

Query: 181 FDEAVEENVVESHISKLRKKL 201
           FD   E  VVE+ IS LRKK+
Sbjct: 209 FDG--ESTVVETFISSLRKKV 227


>gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 229

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 75/131 (57%), Gaps = 6/131 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149
           F++G DD + KP  + E+LAR+ A+ RR  +S ++  + G + ++ + R     G+   L
Sbjct: 95  FEAGADDYLTKPFDNEELLARIKALLRRKNISISQPIKFGSLEIYENQRTVIYNGKNVDL 154

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            + E  +L YL  N+ + V+K +I  A++G+ D    +N VE +++ +RKKL  +L    
Sbjct: 155 SKTEFDLLLYLAKNKDRVVSKEEILDAVWGI-DYYGSDNTVEVYVNYIRKKLSPEL---- 209

Query: 210 VDSKRFLGYSI 220
           + + R +GY +
Sbjct: 210 IKTIRGVGYKL 220


>gi|21241099|ref|NP_640681.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106398|gb|AAM35217.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 227

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 1/158 (0%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +
Sbjct: 67  LDICRDLRNESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHR 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              + A    +++  D     V G    L + E R+L  L A  G+  ++ Q+   +Y  
Sbjct: 127 HDPHGAPAPGLQIDEDACRASVDGRALDLTQVEFRLLRTLAAAPGRVYSREQLMGRLYAD 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               V +  V+SH+  LR+KL +  G D V S    GY
Sbjct: 187 H-RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGY 223


>gi|27380988|ref|NP_772517.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27354154|dbj|BAC51142.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 226

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 6/158 (3%)

Query: 66  IIRAHSQVP----LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ A S+ P    +I ++   + +  +D  + G DD + KP   +E++ARV A+ RR + 
Sbjct: 62  VVTALSRSPERPAIIMLTSKDAKEDVVDGLNGGADDYLGKPFEPQELIARVRAVLRRPRL 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++      G + +     +  V      L RRE  IL  L+  R + + +  +   IYG 
Sbjct: 122 LAPAVLSLGNVELHLGSNEAVVADTKILLRRREALILGALLMRRDRVITRAALIEEIYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD+ +E N +E+ +S+LRKKL    G   + S R +GY
Sbjct: 181 FDDEIESNTLEAQVSRLRKKLAALGGDVEIRSMRGIGY 218


>gi|331266799|ref|YP_004326429.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|326683471|emb|CBZ01089.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 218

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 105/219 (47%), Gaps = 6/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGISDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKFNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   +
Sbjct: 62  VLAEIRKSSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                    +V  +     + G+   +  +E  IL+YL+ N G+ + ++QI  A++   D
Sbjct: 122 GRVFSYKDTKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKATD 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
 gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
          Length = 235

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 19/167 (11%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L RI     Q P++ ++   S+Q  +   D G DD + KP    E+LAR+  I R+    
Sbjct: 70  LKRIRNKGIQTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVILRKNSIK 129

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   K++N   +     VF D +          L  +E  ILEY++ N+ + ++K 
Sbjct: 130 SDSVGNIFKIANLTVDCNEHTVFRDEKR-------IKLSPKEFSILEYMIRNKKRVISKD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +I   IY  FD  +  NV+E HI  LRKK+        + + R +GY
Sbjct: 183 KIEQHIYD-FDSEINSNVIEVHIRLLRKKIDTDFTPKLIHTIRGVGY 228


>gi|83950531|ref|ZP_00959264.1| two-component response regulator [Roseovarius nubinhibens ISM]
 gi|83838430|gb|EAP77726.1| two-component response regulator [Roseovarius nubinhibens ISM]
          Length = 224

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 9/191 (4%)

Query: 35  EEWLQSSARE-DVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFD 92
           E  LQ+S  E DV  I+  L   G   + L + +R A +  P++ ++    +   ++  +
Sbjct: 36  EALLQASGTEYDVLIIDRML--PGLDGMALVKTLRGAKNHTPVLFLTSLGGVDDRIEGLN 93

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLP 150
           +G DD + KP    E+ ARVAA+ RR + +        G + +    R     G+V  L 
Sbjct: 94  AGGDDYLVKPFAFGELSARVAALARRPRATQEETILRAGDLEMDLMHRKVTRAGQVIDLL 153

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209
            RE  +LE L+  +G+   +T +  A++ + FD   + NVVE+HIS+LR K+      + 
Sbjct: 154 PREFALLEQLLRRKGRVQTRTMLLEAVWDISFDP--QTNVVETHISRLRAKVDKPFETEL 211

Query: 210 VDSKRFLGYSI 220
           +++ R  GY I
Sbjct: 212 IETVRGSGYRI 222


>gi|226943549|ref|YP_002798622.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226718476|gb|ACO77647.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 226

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 13/175 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L++ R +R  S+VP+I ++        L   ++G DD + KP   RE++ARV
Sbjct: 55  LMLPGRDGLDICRELRGFSRVPVIMVTARVEEIDRLLGLETGADDYLCKPFSPRELVARV 114

Query: 113 AAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            A+ RR      +     +    R + +G    +  ++ P+   E R+L+ L+A  G+ +
Sbjct: 115 KAVLRRSGKPPPLPGLLTDPASYRAYCNG----IPLDLTPV---EFRLLDALLARPGQAL 167

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            + Q+ + +Y      V +  V+SH+  LR+KL+    G DP+ S   +GY ++W
Sbjct: 168 TREQLMNHLYE-DHRIVTDRTVDSHVKNLRRKLQQAAPGEDPIRSIYGVGYCLEW 221


>gi|322805361|emb|CBZ02925.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 228

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 18/197 (9%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY       G+ S+E F S++ +  +      D+S         GE   E+ RIIR
Sbjct: 21  LEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDIS---------GE---EVCRIIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL   N+ +  
Sbjct: 69  QSSDVHIFMLTAKRALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTYNSTSNL 128

Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + G + +  D R  +V G+   +   E  IL  L++N+G  +++ Q+ + I+G+ D  
Sbjct: 129 IFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGIVLSREQLINKIFGI-DFN 187

Query: 185 VEENVVESHISKLRKKL 201
             +  ++ HI  +RKK+
Sbjct: 188 GYDRTIDVHIKNIRKKI 204


>gi|257792299|ref|YP_003182905.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317490222|ref|ZP_07948710.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325833586|ref|ZP_08166035.1| DNA-binding response regulator [Eggerthella sp. HGA1]
 gi|257476196|gb|ACV56516.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316910716|gb|EFV32337.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325485510|gb|EGC87979.1| DNA-binding response regulator [Eggerthella sp. HGA1]
          Length = 230

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 86/170 (50%), Gaps = 7/170 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++L + R   A   +P++ ++   +   T+   D+G DD + KP    E+++RV A+ 
Sbjct: 58  GLEILHMLRENPATKHLPVMMLTAKGTEFDTVSGLDAGADDYLAKPFGMMELVSRVNALM 117

Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR      ++++    GPI +       +V GE   L  +E  +L  L+ N+G  ++++Q
Sbjct: 118 RRASAPPVMADDELSCGPIELCVSAHTVQVGGEPITLTLKEFDLLHTLLQNQGHVLSRSQ 177

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDP-VDSKRFLGYSI 220
           +   ++G+     E   V+ H+  LR+KL   + G D  V + R +GY I
Sbjct: 178 LLEDVWGM-TYVGETRTVDVHVQTLRQKLAAAQEGADALVRTVRGVGYCI 226


>gi|157962753|ref|YP_001502787.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157847753|gb|ABV88252.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 229

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 12/153 (7%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETG 129
           P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR   S  +A      G
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAGKASPIVSNG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  + +   +    GE   L   E ++ EY M + G+  +KT +   IY   D  ++ NV
Sbjct: 131 PFSLNTSSLEITKSGETITLSGSEYKLFEYFMLHIGEVKSKTVLTEHIYDQ-DFDLDSNV 189

Query: 190 VESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
           +E  I +LRKKL   N+LG   +++ R  GY +
Sbjct: 190 IEVFIRRLRKKLDPDNQLGL--IETLRGQGYRL 220


>gi|163943206|ref|YP_001642436.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865403|gb|ABY46461.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 7/162 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ ++IR+ S VP+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 64  EVAKMIRSQSNVPVIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSND 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  +N      +RV  D     V      L  +E  IL+ L+ N  + + +  I   ++G
Sbjct: 124 KSLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNEKRVLPRESIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E  ++++H+  +RK    KL    + + + +GY ID
Sbjct: 184 -YDYIGESRIIDTHMKNIRK----KLDIPYIKTIKGIGYKID 220


>gi|323701174|ref|ZP_08112849.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533776|gb|EGB23640.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 98/204 (48%), Gaps = 10/204 (4%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE---LPRIIRAHSQVPLIGISDYPS 83
           EGF   E E+  Q         I+  L+     VL+   + +++R   ++P++ ++    
Sbjct: 24  EGFTVCEAEDGQQVLDIVKSQPIDLVLLDLMMPVLDGWTVCKMLRRERKIPIVMLTAKGE 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGP-IRVFSDGR 138
               +   D G DD + KP   RE++ARV A+ RR     +  N+   + P  ++    R
Sbjct: 84  ENDRVLGLDLGADDYIVKPFSTRELVARVKAVLRRAEGIGEKHNSHILSYPGFKLNELTR 143

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
           + E+ GEV  L  +E  +L  L  N G+  ++ Q+   ++G FD   +   V++HI++LR
Sbjct: 144 ELEMHGEVINLTTKEFELLAMLAKNPGRIFSRDQLLEMVWG-FDYCGDSRTVDTHINRLR 202

Query: 199 KKLRNKLGFDP-VDSKRFLGYSID 221
            KL  +   D  + + R +GY  +
Sbjct: 203 SKLERQPNQDEYIKTIRGVGYKFE 226


>gi|254784803|ref|YP_003072231.1| PhoB family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237686809|gb|ACR14073.1| transcriptional regulatory protein PhoP [Teredinibacter turnerae
           T7901]
          Length = 225

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 3/160 (1%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +RA  +  P++ ++     Q  ++  ++G DD + KP H+ E+ AR  A+ RR 
Sbjct: 60  MEIIRRLRAAGKKYPVLILTARGHWQDKVEGLEAGADDYLVKPFHNEELRARANALIRRA 119

Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             S   + + GPI + +  +   V      L   E   LEYL  + GK V+KT++   +Y
Sbjct: 120 AGSATPQLQFGPIAIDTAQKRVLVSNVAIELTSYEYNTLEYLALHAGKPVSKTELTEHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D   + NV+E  I +LRKKL       P+ + R  GY
Sbjct: 180 HQ-DFERDSNVIEVFIGRLRKKLDPDNQLKPISTIRGQGY 218


>gi|160879763|ref|YP_001558731.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428429|gb|ABX41992.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 227

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNR 125
           R     P+I +S     +  +   D+G DD + KP    E+LAR+ A+ RR    +    
Sbjct: 68  REKIATPVILLSAKGETEDKVRGLDTGADDYLPKPFKTEELLARLRALGRRKGEIIPEGI 127

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G I +  +  D     + + L  +E ++LE LM  +G  ++K  I   ++G FD   
Sbjct: 128 LSYGDIELNPNTLDVYCGKKTYKLTLKESQLLELLMNMKGMVISKNYIIEKLWG-FDGEA 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E+N VE +IS LRKKL      + + + R LGY +
Sbjct: 187 EDNHVEVYISFLRKKLAALGSTNTIQTIRGLGYML 221


>gi|325840792|ref|ZP_08167156.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1]
 gi|325490162|gb|EGC92499.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1]
          Length = 228

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 6/202 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  LV D   A    +   +  F +    E L    +E +  +   L+    K  E
Sbjct: 4   LLIEDEVLVLDALKAYLEREQYRV--FVATTGNEGLTIFEKEKIDLVILDLMLPDMKGEE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IRA S V L  ++   SL+  +   + G DD + KP   RE++AR+  + RR+   
Sbjct: 62  ICQQIRAISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRINGP 121

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + N N  + G + +    R  +VQ E+ P    E  +L  LM N+GK + + Q+ + I G
Sbjct: 122 LQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQILG 181

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            FD    +  ++ HI  +RKK+
Sbjct: 182 -FDFNGYDRTIDVHIKNIRKKI 202


>gi|325847051|ref|ZP_08169877.1| putative sensory transduction protein RegX3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481023|gb|EGC84068.1| putative sensory transduction protein RegX3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 219

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ + IR  S +P+I ++        +   +SG DD + KP    E+++RV A+ RR  
Sbjct: 59  LEILKEIREFSSIPIIMLTARDGEYDKVMGLESGADDYITKPFSILELISRVKAVLRRSE 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K        G I +    R  +V GE   L  +E  +L   MAN G  + +      I+G
Sbjct: 119 KKDREHLNYGSIEINIKKRTVKVDGEKIDLTFKEFEMLLLFMANIGNVITREDFLLKIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL++    + + + R LGY +
Sbjct: 179 -YDYEGETRTVDVHIASLRNKLKS--AGENIKTVRNLGYKL 216


>gi|22536876|ref|NP_687727.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25010740|ref|NP_735135.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76787341|ref|YP_329460.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|22533726|gb|AAM99599.1|AE014224_2 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|23095094|emb|CAD46329.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562398|gb|ABA44982.1| DNA-binding response regulator [Streptococcus agalactiae A909]
          Length = 234

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 9/168 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R+IR  SQ+P+I ++   +    +   + G DD + KP +  E+LAR+ +  RR   
Sbjct: 62  ELTRLIRQDSQIPIIMLAAKTTDMDRILGLNIGADDFITKPFNSLEVLARINSQLRRYYE 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K  N   + G + +  +  +    G+   L   E +IL  LM++ G+   KTQ++
Sbjct: 122 FNSLAKPKNQFIKIGELELDEEHVELTKNGKHIKLTATEFKILHILMSSPGRIYTKTQLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             I G + E  +E  +  HIS +R K+ +   +   + + R +GY I+
Sbjct: 182 EKINGRYLEG-DETTIMVHISNIRDKIEDDSKYPKYIKTLRGVGYKIE 228


>gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 230

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 78/146 (53%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R+IRA S VP++ ++   S    ++  ++G DD ++KP   +E+LAR+ A+ RR ++
Sbjct: 64  ELCRLIRAESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALLRRSQM 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N++A+       G + +F +       G       +E  +  +L+ NR +  ++ Q+  
Sbjct: 124 LNSQADIAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G +D       V+ HIS LR+K+
Sbjct: 184 KVWG-YDYPGGTRTVDVHISWLRQKI 208


>gi|257126795|ref|YP_003164909.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050734|gb|ACV39918.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 226

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 16/151 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  SQVP+I ++    +   +  FD G DD + KP  + E+LAR+ A+ RR K
Sbjct: 62  MEVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTK 121

Query: 121 VS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            S          +         VF D     +Q     L +RE  +L++L+ N+G  +++
Sbjct: 122 KSVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQ-----LSKREFELLDFLVLNKGIVLSR 176

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +I   ++G FD    +N+++ +I  LR K+
Sbjct: 177 DKILEEVWG-FDYIGNDNILDLYIKYLRDKI 206


>gi|268589246|ref|ZP_06123467.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131]
 gi|291315431|gb|EFE55884.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131]
          Length = 224

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  ++     +  ++    +  D++ ++  L    E  L
Sbjct: 3   ILIVEDNALLRHHLTVQLKDLGHQVDSAEDAKEADYFLHESCPDIAVVDLGL--PDEDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  R  H  +PL+ ++   S Q  +   +SG DD V KP    E++AR+ A+ RR  
Sbjct: 61  SMIKRWRGEHVNIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E G   +    ++  V GE   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVLELGNFVIDLSRKEFTVNGETVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKK++     D + + R  GY  D N
Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQFHSDDVIVTVRGQGYRFDVN 223


>gi|160892844|ref|ZP_02073633.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50]
 gi|156865403|gb|EDO58834.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50]
          Length = 222

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 98/189 (51%), Gaps = 6/189 (3%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSG 94
           ++L++++ + V  I   +I K +  + + + IRA   QVP++ ++     Q  +   D+G
Sbjct: 38  DYLETASYDGV--IMDIMIPKKDG-MSVLKTIRAEGIQVPVLFLTAKSETQDIVRGLDAG 94

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRE 153
             D + KP    E+LAR+  + R + +SN+     G +++ ++       G    L  RE
Sbjct: 95  ASDYMTKPFEFSELLARLRVMLRTVHISNDSILNYGSLQIDTNNHRVVRDGVTVDLTVRE 154

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             ILEYL+ N+   V + QI + I+ + D+ +  NVV+ +I  LR+K+ +      + + 
Sbjct: 155 YAILEYLVRNKNIVVTREQIRANIWSI-DDDINSNVVDVYIRYLRRKIDDPFEEKLIHTI 213

Query: 214 RFLGYSIDW 222
           R +GY ++ 
Sbjct: 214 RGVGYRLEC 222


>gi|332716740|ref|YP_004444206.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325063425|gb|ADY67115.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 217

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 6/150 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP- 130
             P+I ++ +  +   +   ++G DD + KP    E+ AR+ A+ RR +  +      P 
Sbjct: 72  STPVIILTAHDQVSDRIAGLNAGADDYLVKPFDLNELSARMLAVSRRYEGRSAPVIRLPG 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +    R+  V G    L  RE  +LE L+ + G  V+K+Q+   +Y  F   +E N V
Sbjct: 132 IEINQVARNIVVDGTAQTLSAREWAVLEKLVEHPGAVVSKSQLHDTLYE-FGAEIESNTV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E +IS+LRK    K+G D V++ R +GY+I
Sbjct: 191 EVYISRLRK----KIGHDRVETVRGVGYTI 216


>gi|322374704|ref|ZP_08049218.1| DNA-binding response regulator VncR [Streptococcus sp. C300]
 gi|321280204|gb|EFX57243.1| DNA-binding response regulator VncR [Streptococcus sp. C300]
          Length = 218

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 105/219 (47%), Gaps = 6/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGISDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   +
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                    +V  +     + G+   +  +E  IL+YL+ N G+ + ++QI  A++   D
Sbjct: 122 GRVFSYKDTKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKATD 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|154497232|ref|ZP_02035928.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC
           29799]
 gi|150273631|gb|EDN00759.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 4/159 (2%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R IR     +P++ ++   +L      F  G DD + KP    E+L RVAA+ RR K
Sbjct: 62  ELLRQIRESGMDMPVLLVTAKQTLSDKKKGFLLGADDYMVKPFEEEEMLLRVAALLRRAK 121

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   R  T G   +  D       G    LP++E  +L  L++   K   + Q+   I+ 
Sbjct: 122 ILTERKLTVGSTELIYDSLTVISNGTAQTLPKKEFLLLYKLLSFNNKTFTRRQLMDEIWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L D   +E+ V  HI+KLR + R+   F+ V + R LGY
Sbjct: 182 L-DTESDEHTVNVHINKLRDRFRDNHDFEIV-TVRGLGY 218


>gi|332527397|ref|ZP_08403453.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332111806|gb|EGJ11786.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 219

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 27/228 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL---QSSAREDVSAIEAFLI---- 54
            +L++D  L+ DG  A     G++  GF      +W+   ++++RE  SA+ A  +    
Sbjct: 3   ILLVEDDPLLGDGLRA-----GLTQAGFQV----DWVRDGEAASRELRSAVHAAAVLDLG 53

Query: 55  ---GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
                G +VL   R  RA  ++P++ ++   ++   +   DSG DD V KP+   E+ AR
Sbjct: 54  LPRKDGLEVLAETR--RAGVRLPVLVLTARDAVSDRVIGLDSGADDYVVKPVDLDELAAR 111

Query: 112 VAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ RR    + +    G + +    R     GE   L +RE  +L  LM N G+ + +
Sbjct: 112 LRALIRRAHGQTQDLLAAGEVVLDPAARTVTRGGEPVVLSQREFDLLHALMLNAGRVLTR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            Q+   +Y  +   VE N VE H+  LR+    KLG + V + R +GY
Sbjct: 172 EQLEQHLY-RWGREVESNAVEVHVHHLRR----KLGAELVQTVRGVGY 214


>gi|319745720|gb|EFV98017.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 224

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 109/223 (48%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +   AL  D G S++  F+  +  E++ +   + V  +   ++ K   +
Sbjct: 3   LLVVEDEKSIAEAIQALLADKGYSVDLVFDGDDGLEYILTGLYDLV--LLDIMLPKRSGL 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R+  A  + P+I ++        ++  D G DD + KP    E+LAR+    R+  
Sbjct: 61  SVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  N+   G IR+ +D  + E +     L  +E  ++E  M N  + + K Q+ S ++G
Sbjct: 121 LIRTNQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             D + E N +E  IS LRKKLR  K   + + +K F GYS++
Sbjct: 181 PSDNS-EYNQLEVFISFLRKKLRFLKADIEIITTKGF-GYSLE 221


>gi|189463223|ref|ZP_03012008.1| hypothetical protein BACCOP_03936 [Bacteroides coprocola DSM 17136]
 gi|189430202|gb|EDU99186.1| hypothetical protein BACCOP_03936 [Bacteroides coprocola DSM 17136]
          Length = 225

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +L     +  H+ V  I +S   SL+  ++  D G DD + KP H  E+ AR+ +
Sbjct: 57  GNGLDLLAELHALGKHTNV--IILSAKASLEDKVNGLDLGADDYLPKPFHLAELHARIKS 114

Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR L+    + + G + +F D     VQG+   L R+E  IL Y M+  G+ V K  +
Sbjct: 115 LLRRKLREGERKLQVGNVELFPDDFRVMVQGKEIELNRKEYDILNYFMSRPGRLVNKNTL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             +++G   D+    + + + I  LRK+L++      + S    GY 
Sbjct: 175 AESVWGDHIDQVDNFDFIYAQIKNLRKRLKDAGATPELKSVYGFGYK 221


>gi|240145147|ref|ZP_04743748.1| phosphate regulon response regulator PhoB [Roseburia intestinalis
           L1-82]
 gi|257202825|gb|EEV01110.1| phosphate regulon response regulator PhoB [Roseburia intestinalis
           L1-82]
          Length = 223

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +L   R  +A + VP+I ++   S    +   D G DD + KP    E+++RV A+ 
Sbjct: 60  GLDILTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALL 119

Query: 117 RRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR    N  ++     I +  D     V G++  L  +E  +L+YLM N+G  +++ +I 
Sbjct: 120 RRTSRINEDSQLIHEDILMDMDKHAVTVAGQLCELTFKEFELLKYLMLNQGIVLSRDKIM 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G F+   E   V+ HI  LR+KL    G   + + R +GY I+
Sbjct: 180 DQVWG-FEYEGESRTVDMHIKTLRQKLGAAGG--CIKTVRNVGYMIE 223


>gi|310826081|ref|YP_003958438.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308737815|gb|ADO35475.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 227

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--PIRVFSDGRDPEVQGEVFP 148
           F +G DD + KP    E+L R+ AI RR     + A      +RV +  R   V GE   
Sbjct: 90  FRTGADDYLVKPFDRDELLLRIEAILRRSTGHYDIAALCFKELRVETMTRTVTVAGEALD 149

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L  ++  ILEYL++++ + V K QIF  I+G F      NVVE ++S LR+ L +  G+D
Sbjct: 150 LRGKQYDILEYLVSHQEQLVTKAQIFDKIWG-FTTDTSSNVVEVYVSALRRIL-SGCGYD 207

Query: 209 PV-DSKRFLGYSI 220
               + R +GY +
Sbjct: 208 SCLKTIRGVGYML 220


>gi|270157088|ref|ZP_06185745.1| DNA-binding response regulator PmrA [Legionella longbeachae D-4968]
 gi|289164500|ref|YP_003454638.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Legionella longbeachae NSW150]
 gi|269989113|gb|EEZ95367.1| DNA-binding response regulator PmrA [Legionella longbeachae D-4968]
 gi|288857673|emb|CBJ11516.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Legionella longbeachae NSW150]
          Length = 225

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 14/156 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P+I ++   S++  +   DSG DD + KP    E+ AR+ A+ RR   S  RA+   ++
Sbjct: 73  TPVIILTARESVEDRVKGLDSGADDYLVKPFDLNELSARIRALVRR---SQGRAD-AVLQ 128

Query: 133 VFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
             +   DP      V   +  +PRRE  +L+ L+ N G+ +++ Q+  +IYG ++E V+ 
Sbjct: 129 YRNITLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG-WEEDVDS 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           N +E HI  LRKKL        + + R +GY  + N
Sbjct: 188 NALEVHIHNLRKKLNANF----IRTIRGVGYMAEKN 219


>gi|255523826|ref|ZP_05390791.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512529|gb|EET88804.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 230

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 8/149 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R+ S +P+I +S    + T +D    G DD V KP    E+LAR+ +  RR K 
Sbjct: 63  EILRELRSFSDIPVIILSAKDMVHTKVDLLRLGADDYVTKPFDLNEVLARIESNLRRCKS 122

Query: 122 -SNNRAETGPIRVFSDGRDPE------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +++  E  PI  + D    E      V G    L  +E  IL  L+++  K  +K  +F
Sbjct: 123 DTSSTIEKEPILTYKDITLNEEEKKVVVNGNTLVLTSKEYGILLLLLSHPQKVFSKANLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +I+   +   E+N +  HIS +R KL++
Sbjct: 183 ESIWK-EEYFSEDNTLNVHISNIRNKLKS 210


>gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2]
          Length = 227

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 17/197 (8%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY     DDG+           E+ ++ A  D+  ++  L G      E+ R +R 
Sbjct: 21  LGKEGYEVTVADDGLK-------ALAEFDRNGA--DLVLLDLMLPGVSGT--EVCRELRV 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NN 124
            S VP+I ++   S    +   + G DD V KP   RE+LARV A+ RR   S      +
Sbjct: 70  KSSVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVLRRNVESEGFDDES 129

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E G +R+  +     V+GE   +P +E  +LE L+ N G+ + + Q+   I+G  D  
Sbjct: 130 VLEAGGVRIDVERHVVSVRGEELSMPLKEFELLEILIRNSGRVMTRGQLIDRIWG-EDYV 188

Query: 185 VEENVVESHISKLRKKL 201
            +   ++ H+ +LR K+
Sbjct: 189 GDTKTLDVHVKRLRAKV 205


>gi|320333683|ref|YP_004170394.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754972|gb|ADV66729.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 227

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 9/157 (5%)

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           GE  L   R +R  S   ++P++ ++   +    ++  +SG DD + KP    E++ARV 
Sbjct: 55  GESGLSFLRRLRGDSDLRRLPVLMLTARAAEAERVEGLESGADDYLTKPFSAAELVARVR 114

Query: 114 AIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR +  + N  E GP+ +     +  ++G    L RRE  +L +L  NRG+   + +
Sbjct: 115 ALLRRTQTDAPNSIENGPLTIDVSAAEARLRGGRLNLTRREFDLLAFLALNRGRVYGRAE 174

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +   ++G  D    E  V+ H+++LR      LG DP
Sbjct: 175 LLDRVWGA-DFLGGERTVDQHVTQLRA----HLGDDP 206


>gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 237

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 17/167 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+    + VP++ ++   +++  +     G DD V KP    E++ARV AI RR    
Sbjct: 73  LRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRR---- 128

Query: 123 NNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +    P R+         D       G    L   E ++L YLM N  K V+K QI  
Sbjct: 129 SGQGTGAPTRIVVGDLVLDEDAHQVLRAGHEIELTATEFKLLRYLMLNANKVVSKAQILD 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            ++  +D   + N+VE++IS LRKKL    G+ P  + + R +GYS+
Sbjct: 189 HVWQ-YDFGGDANIVETYISYLRKKLD---GYGPPMIKTVRGVGYSL 231


>gi|220933773|ref|YP_002512672.1| two component transcriptional regulator, winged helix family
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995083|gb|ACL71685.1| two component transcriptional regulator, winged helix family
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 220

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 17/160 (10%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA 126
           RA   +P++ ++     +  ++   +G DD + KP H  E+LARV A+ RR   V +   
Sbjct: 68  RAGLSMPVLILTARDGWRERVEGLRAGADDYLGKPFHTEELLARVQALLRRGAPVRDTVL 127

Query: 127 ETGPIRVFSDGRDPEVQ------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             GP R+     D + Q      GE   L   E R+L Y + + G+ ++KTQ+   +Y  
Sbjct: 128 HVGPWRL-----DEQRQCLLNESGEETALTATEYRLLRYFLRHPGEVLSKTQLSEHLYE- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   + NV+E ++    ++LR+KLG D ++++R  GY +
Sbjct: 182 YESERDSNVLEVYV----RRLRDKLGRDLIETRRGQGYVL 217


>gi|167746576|ref|ZP_02418703.1| hypothetical protein ANACAC_01286 [Anaerostipes caccae DSM 14662]
 gi|167653536|gb|EDR97665.1| hypothetical protein ANACAC_01286 [Anaerostipes caccae DSM 14662]
          Length = 227

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 9/151 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G++VL   R +R  S +P+I IS    + T +D    G DD + KP    E+ ARV +  
Sbjct: 61  GDQVL---RELRGFSDIPVIVISAKDMVGTKIDLLKLGADDYITKPFDLGEVEARVLSNL 117

Query: 117 RRLKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR   S  + +T   R   +  D +   ++G+   L  +E  IL+ LM +  K   K  +
Sbjct: 118 RRQSSSKVKEQTLQYRDLILSKDAKSVLLEGQDLELTAKEYAILQLLMEHPKKVYTKANL 177

Query: 174 FSAIYGLFDEAV-EENVVESHISKLRKKLRN 203
           +  ++   DE + ++N V++HIS LR KL+ 
Sbjct: 178 YETVWE--DEYLGDDNAVKTHISNLRNKLKK 206


>gi|78045890|ref|YP_362065.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927350|ref|ZP_08188603.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325928590|ref|ZP_08189775.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78034320|emb|CAJ21965.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325541023|gb|EGD12580.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325542273|gb|EGD13762.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 227

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 1/158 (0%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +
Sbjct: 67  LDICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHR 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              + A    + +  D     V G    L + E R+L  L A  G+  ++ Q+   +Y  
Sbjct: 127 HDPHGAPAPGLHIDEDACRASVDGRALDLTQVEFRLLRTLAAAPGRVYSREQLMGRLYAD 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               V +  V+SH+  LR+KL +  G D V S    GY
Sbjct: 187 H-RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGY 223


>gi|260654507|ref|ZP_05859997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Jonquetella anthropi E3_33 E1]
 gi|260630784|gb|EEX48978.1| phosphate regulon transcriptional regulatory protein PhoB
           [Jonquetella anthropi E3_33 E1]
          Length = 237

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 35/229 (15%)

Query: 8   RALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65
           +AL + GY A +  DG   LE          L  + R D+  ++  L G +G +V    R
Sbjct: 21  QALKRSGYEASWAGDGDTGLE----------LIMTGRPDLVLLDLMLPGLEGWEVCRRMR 70

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
                   P+I ++        +    +G DD + KP    E++ARV A  RR  ++   
Sbjct: 71  QAPETRDTPVIMVTARRDESEAVAGLAAGADDYIRKPFSLAELMARVEAQLRRRSMARQD 130

Query: 126 A------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A            ETG +R+  DG + E+    F       +ILE L +  G+ V++ +I
Sbjct: 131 AEETKDERIVLDQETGVVRI--DGWEAELSPTEF-------QILELLASRPGRPVSRDRI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + ++GL  +  E   +++H+S+LRKKL        + + R  GY ++W
Sbjct: 182 TAVVWGL--DPAESRALDTHLSRLRKKLSGCPDGPEITTLRSRGYRLEW 228


>gi|300021884|ref|YP_003754495.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523705|gb|ADJ22174.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 225

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 15/217 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           ++LVK GY     +DG +  GF       +       DV  I+  L G  G  +++  R 
Sbjct: 18  QSLVKHGYDVDVSNDGQN--GFKHAVVGGF-------DVLVIDRMLPGLDGLSIVQRLRA 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-- 124
            R  S  P++ ++    ++  ++ F+SG DD + KP    E++ARVAA+ RR  +++   
Sbjct: 69  ARVSS--PILFLTAVGGIEDRIEGFESGADDYLVKPFALGELVARVAALGRRPPIAHEDF 126

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 + V    R+ +  GE+  L  RE R+LE L+ NRG+ V ++ +   ++ L  + 
Sbjct: 127 YYRIADLEVDLIKREIKRGGEIIRLQPREFRMLEILVRNRGRVVTRSMLLEQVWDLELDP 186

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++V++++S+LR K+        + + R LGY ID
Sbjct: 187 -KTSIVQTNVSRLRLKIDRPGDIPLIRTVRGLGYRID 222


>gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 226

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 14/178 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G    E+ + +R    VP+I ++   S    +   + G DD + KP   RE++AR+
Sbjct: 53  LMLPGMSGTEVCKQLRGRGAVPVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARI 112

Query: 113 AAIYRRLKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            A+ RR   +++      + GP+R+  D     V G    LP +E  +LEYL+ N G+ +
Sbjct: 113 RAVLRRGADADDAHSPVLQAGPVRMDVDRHVVSVHGVPTSLPLKEFDLLEYLIRNAGRVL 172

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
            + Q+   ++G  D   +   ++ H+    K+LR K+  DP + +     R LGY ++
Sbjct: 173 TRGQLIDRVWG-ADYVGDTKTLDVHV----KRLRAKIEPDPAEPRYLVTVRGLGYKLE 225


>gi|225575075|ref|ZP_03783685.1| hypothetical protein RUMHYD_03164 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037745|gb|EEG47991.1| hypothetical protein RUMHYD_03164 [Blautia hydrogenotrophica DSM
           10507]
          Length = 223

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR +SQVP+I IS  P     +     G DD + KP     ++A+V A+ RR     ++ 
Sbjct: 67  IRKNSQVPVIFISSAPDNMNIVMAMTRGADDFIAKPFDLDVLVAKVQAMLRRTYAFGMTG 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + +         + +V  L + E RIL+ L  N GK V++  I + ++   D 
Sbjct: 127 NLMEHKGVVLNLGNSTLTFKEQVLELTKNEFRILQILFENEGKIVSRDAIMNRLWE-NDS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V++N +  ++++LR+KL +    D + +K+ LGY I
Sbjct: 186 FVDDNTLTVNMTRLRRKLESFGLADFILTKKGLGYRI 222


>gi|120613269|ref|YP_972947.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|326319347|ref|YP_004237019.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|120591733|gb|ABM35173.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
 gi|323376183|gb|ADX48452.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 224

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+    S +P++ ++   S+   +   D G DD + KP   +E+ ARV A+ RR +  
Sbjct: 64  LKRLRGRGSALPVLILTAADSVDERVKGLDYGADDYMAKPFSLQELEARVRALTRRGMGA 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +++    GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   +   +
Sbjct: 124 TSSTIRHGPLVYDQAGRMATIDGKLVELSARELGLLEVLLQRAGRLVSKEQLVERLCE-W 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 183 GEEVSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220


>gi|164687696|ref|ZP_02211724.1| hypothetical protein CLOBAR_01338 [Clostridium bartlettii DSM
           16795]
 gi|164603470|gb|EDQ96935.1| hypothetical protein CLOBAR_01338 [Clostridium bartlettii DSM
           16795]
          Length = 223

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 8/160 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ IS        +   + G DD ++KP     ++A++ AI RR      S+
Sbjct: 67  IRKLSKVPIVFISSASDNMNIVMAMNMGGDDFISKPFDLHVLIAKIQAILRRTYDFSTSS 126

Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N  E  G I   +D       GE   L + E +IL+ L+ N+ K V++  +   ++   D
Sbjct: 127 NLLEHRGAILNINDN-SISYNGEKVELTKNEYKILQTLLENKNKTVSRDNLMIKLWET-D 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             VEEN +  ++++LRKKL + +G +  + +K+ LGY ++
Sbjct: 185 NYVEENTLNVNVTRLRKKLES-IGLNNFIKTKKGLGYIVE 223


>gi|330685400|gb|EGG97058.1| heme response regulator HssR [Staphylococcus epidermidis VCU121]
          Length = 224

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 89/180 (49%), Gaps = 4/180 (2%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           D++ ++  +   G    EL  +I+    +P+I ++   +L      F SG DD + KP  
Sbjct: 47  DIAIVDIMM--HGMDGFELCHMIKEDYDLPVIMLTARDALSDKERAFISGTDDYLTKPFE 104

Query: 105 HREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
            +E++ R+ A+ RR  +  +   T G + +     +  V G+   LP +E ++L  L +N
Sbjct: 105 VKELIFRIKAVLRRYHIHTDEKLTIGNLTLHQAYMEVVVNGKTMTLPNKEFQLLFLLASN 164

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +  ++T +   I+G +D   +E  ++ HI +LR++L+       + + R  GY ++ +
Sbjct: 165 EKQIFSRTHLIEKIWG-YDYEGDERTIDVHIKRLRQRLQQLDSNVTIKTVRGQGYKVEHH 223


>gi|170690683|ref|ZP_02881849.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170143932|gb|EDT12094.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 225

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   +      +   +  +L+     +  + L  S   DV  ++  L    G+ V
Sbjct: 3   LLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADRLLQSNHYDVILLDLNLPKLSGKNV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R+ +     P++ ++   S+   ++   +G DD + KP   RE++AR+    RR  
Sbjct: 63  LR--RLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  +    G +    D R   ++G    +  RER +LE L+   GK V K  +  AI+ 
Sbjct: 121 PSKASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
           L DE   E+ VE +IS+LRKKL
Sbjct: 181 LADEP-SEDAVEIYISRLRKKL 201


>gi|157376378|ref|YP_001474978.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318752|gb|ABV37850.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 231

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 10/152 (6%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAET 128
           P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR       V NN    
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSAGKASPVVNN---- 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           GP  + +   + +    V  L   E ++ EY M + G+ ++KT +   IY   D  ++ N
Sbjct: 130 GPFSINTSSLEIKKGDVVITLSGTEYKLFEYFMLHPGEVISKTVLTEHIYDQ-DFDLDSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V+E  I +LRKKL     F  +++ R  GY +
Sbjct: 189 VIEVFIRRLRKKLDPDNSFSLIETLRGQGYRL 220


>gi|293375797|ref|ZP_06622067.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292645574|gb|EFF63614.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 228

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 7/149 (4%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           KGE   E+ + IRA S V L  ++   SL+  +   + G DD + KP   RE++AR+  +
Sbjct: 58  KGE---EICQQIRAISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTV 114

Query: 116 YRRLK--VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            RR+   + N N  + G + +    R  +VQ E+ P    E  +L  LM N+GK + + Q
Sbjct: 115 VRRMNGPLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQ 174

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + + I G FD    +  ++ HI  +RKK+
Sbjct: 175 LINQILG-FDFNGYDRTIDVHIKNIRKKI 202


>gi|325679549|ref|ZP_08159129.1| transcriptional regulatory protein afsQ1 [Ruminococcus albus 8]
 gi|324108836|gb|EGC03072.1| transcriptional regulatory protein afsQ1 [Ruminococcus albus 8]
          Length = 220

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 30/226 (13%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELP 64
           I L  DD +  EG       E    +A   V+  +A L G+ +  +           ++ 
Sbjct: 3   ILLVEDDPIIQEGLKLALTSEGCGFAAASSVAEAKALLGGEYDICILDVMLPDGTGYDVC 62

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
             IR     P+I ++       T+   ++G DD + KP   RE++AR+ A+ RR+     
Sbjct: 63  AEIRRKGDTPVIFLTACDDELHTVLALENGADDYIAKPFRMRELMARIKAVLRRMGRKTD 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                KV +N       +VF DG       EV  L   E ++L   + NRG  +++ Q+ 
Sbjct: 123 SEEPVKVGSNDVNVRTGKVFRDG------SEVI-LTAMEYKLLLIFINNRGAVLSRQQLL 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+ +  + V +N +  ++ +LR+KL N  G + + + R LGY +
Sbjct: 176 HNIWDVAGDYVTDNTLTVYVKRLREKLEN--GDEVIQTVRGLGYRL 219


>gi|254496524|ref|ZP_05109395.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
 gi|254354263|gb|EET12927.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
          Length = 222

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 14/158 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +  P+I ++   S++  +   DSG DD + KP    E+ AR+ A+ RR   S  RA++  
Sbjct: 68  NSTPVIILTARESVEDRIKGLDSGADDYLVKPFDLNELSARIRALVRR---SQGRADS-V 123

Query: 131 IRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           ++  +   DP          +  +PRRE  +L+ L+ N G+ +++ Q+  +IYG ++E V
Sbjct: 124 LQYKNITLDPAAHSVLVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG-WEEDV 182

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + N +E HI  LRKKL        + + R +GY  + N
Sbjct: 183 DSNALEVHIHNLRKKLNANF----IRTIRGVGYMAEKN 216


>gi|29376802|ref|NP_815956.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583]
 gi|256960861|ref|ZP_05565032.1| regulatory protein vanRB [Enterococcus faecalis Merz96]
 gi|2500744|sp|Q47744|VANR_ENTFA RecName: Full=Regulatory protein vanRB
 gi|1209526|gb|AAB05622.1| response regulator [Enterococcus faecalis]
 gi|29344267|gb|AAO82026.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583]
 gi|256951357|gb|EEU67989.1| regulatory protein vanRB [Enterococcus faecalis Merz96]
          Length = 220

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   R +L RV A+ RR   
Sbjct: 63  ELLREFRAQNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEFRVGRLTLLPEDFRVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL   +    + + R +GY ++
Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPENI----IKTIRGVGYRLE 217


>gi|77405926|ref|ZP_00783006.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77410761|ref|ZP_00787119.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77413495|ref|ZP_00789685.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77160439|gb|EAO71560.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77163140|gb|EAO74093.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77175437|gb|EAO78226.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|319744716|gb|EFV97059.1| response regulator VanR [Streptococcus agalactiae ATCC 13813]
          Length = 228

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 9/168 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R+IR  SQ+P+I ++   +    +   + G DD + KP +  E+LAR+ +  RR   
Sbjct: 56  ELTRLIRQDSQIPIIMLAAKTTDMDRILGLNIGADDFITKPFNSLEVLARINSQLRRYYE 115

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K  N   + G + +  +  +    G+   L   E +IL  LM++ G+   KTQ++
Sbjct: 116 FNSLAKPKNQFIKIGELELDEEHVELTKNGKHIKLTATEFKILHILMSSPGRIYTKTQLY 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             I G + E  +E  +  HIS +R K+ +   +   + + R +GY I+
Sbjct: 176 EKINGRYLEG-DETTIMVHISNIRDKIEDDSKYPKYIKTLRGVGYKIE 222


>gi|296134173|ref|YP_003641420.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032751|gb|ADG83519.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 228

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 84/163 (51%), Gaps = 4/163 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  S+ P+I ++    +   +   D G DD + KP    E+LAR+ A+ +R K
Sbjct: 63  MEVLRRLRQVSETPVIMLTAKDEVTDKVMGLDIGADDYMTKPFAIEELLARIRAVLKRRK 122

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N++ +    G +++  +        E   L ++E  +L YL+ N+   + + +I   +
Sbjct: 123 PANHKRDIITAGDLKINLEQHSVCFNKEPVDLTKKEYDLLCYLVQNKNMVLTRDKILETV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + NVV+ +I  LR K+ ++     + + R +GY I
Sbjct: 183 WG-YDYYGDTNVVDVYIRYLRSKIDDRFNTKLIHTVRGVGYII 224


>gi|315222895|ref|ZP_07864775.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|319939034|ref|ZP_08013398.1| transcriptional regulatory protein ciaR [Streptococcus anginosus
           1_2_62CV]
 gi|315188034|gb|EFU21769.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|319812084|gb|EFW08350.1| transcriptional regulatory protein ciaR [Streptococcus anginosus
           1_2_62CV]
          Length = 224

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLNDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V        V G    L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 TVNLSTNTTLVDGNEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+     + + + R +GY
Sbjct: 192 VYVSKIRKKLKGTTFANNLQTLRSVGY 218


>gi|315173434|gb|EFU17451.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
          Length = 224

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 13/162 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS   +    +   + G DD V KP     ++A++ A+ RR   S N +
Sbjct: 67  IREVSKVPIIFISSRSTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRR---SYNYS 123

Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +T         I +  D    E++GE+  L + E R+L  LM   GK + + ++  A++ 
Sbjct: 124 DTDSEVLSHNGITLNVDNGRMEIKGEMIDLSKNEYRLLYLLMKKHGKILTREKLLRALWD 183

Query: 180 LFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  V++N +  +I++LRKK+      D +++K  +GY +
Sbjct: 184 --DERFVDDNTLTVNINRLRKKIEQSGIADYIETKVGVGYMV 223


>gi|240850121|ref|YP_002971514.1| two-component system regulatory protein [Bartonella grahamii
           as4aup]
 gi|240267244|gb|ACS50832.1| two-component system regulatory protein [Bartonella grahamii
           as4aup]
          Length = 221

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 22/139 (15%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEV 142
            D+G DD V KP H  E++AR+ A+ RR        L   N   +T   RVF D      
Sbjct: 91  IDAGADDYVVKPFHLEEVMARLRALIRRATGHATSALCCGNVLLDTKTSRVFVD------ 144

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201
            G++  L   E R+L YLM +  + +++T++   +Y   FD+  + N VE  + +LRK  
Sbjct: 145 -GQLIKLTSYEFRLLSYLMHHCDRVISRTELTEHLYDQDFDK--DSNTVEVFVGRLRK-- 199

Query: 202 RNKLGFDPVDSKRFLGYSI 220
             KLG D +++ R +GY +
Sbjct: 200 --KLGVDLIETIRGMGYRV 216


>gi|254520016|ref|ZP_05132072.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913765|gb|EEH98966.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 227

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 77/144 (53%), Gaps = 6/144 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR  S V +  ++   SL   +   D G D+ + KP   RE+ ARV A++RR+  
Sbjct: 62  EICKIIRRTSDVYIFMLTSKASLNDRIVGLDIGADEYLIKPFSPRELTARVNALFRRINT 121

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S   ++    G +++  + R  E++GE       E  IL  L+ N+GK +++ Q+   ++
Sbjct: 122 SEKISDIFNDGILKIDYEKRIVELRGEEISFTPSEFDILYTLLINKGKVLSREQLIEIVF 181

Query: 179 GL-FDEAVEENVVESHISKLRKKL 201
           G+ FD    +  ++ HI  +RKK+
Sbjct: 182 GIDFDGY--DRTIDVHIKNIRKKI 203


>gi|256060736|ref|ZP_05450900.1| DNA-binding response regulator [Brucella neotomae 5K33]
 gi|261324726|ref|ZP_05963923.1| FeuP [Brucella neotomae 5K33]
 gi|261300706|gb|EEY04203.1| FeuP [Brucella neotomae 5K33]
          Length = 229

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR    +++  
Sbjct: 68  RSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEF 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y   FD   
Sbjct: 128 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + +LRK    K+G D +++ R +GY +
Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 216


>gi|238783795|ref|ZP_04627814.1| Two-component response regulator of virulence determinant [Yersinia
           bercovieri ATCC 43970]
 gi|238715346|gb|EEQ07339.1| Two-component response regulator of virulence determinant [Yersinia
           bercovieri ATCC 43970]
          Length = 218

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D AL++        + G  ++     +  ++       D++ I+  L   GE  L L 
Sbjct: 1   MEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLSLI 58

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS 122
           R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + ++
Sbjct: 59  RRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIGLA 118

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +   E  P ++    R+  V  +   L   E  I+E L+ N G+ V+K  +   +Y    
Sbjct: 119 SQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNSGRVVSKETLMLQLYP-DA 177

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  E + ++  + +LRKKL+ +   + + + R  GY  D
Sbjct: 178 ELRESHTIDVLMGRLRKKLQAEHEGEVITTIRGQGYRFD 216


>gi|225378732|ref|ZP_03755953.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM
           16841]
 gi|225209569|gb|EEG91923.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM
           16841]
          Length = 251

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +L   R  +  ++VP+I ++   S    +   D G DD ++KP    E+++RV A+ 
Sbjct: 88  GLDILTKIRTDKNTAKVPIIMVTAKTSELDKVKGLDLGADDYISKPFGVMELISRVKALL 147

Query: 117 RRLKVSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR   +   ++     I V +D     V G++  L  +E  +L+YL+ N+G  +++ +I 
Sbjct: 148 RRTTNAQEESQIAYENILVDNDKHAVYVDGKLCELTYKEFELLKYLVINKGIVLSRDKIM 207

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++G FD   E   V+ HI  LR+KL        + + R +GY ++
Sbjct: 208 NQVWG-FDYEGESRTVDMHIKTLRQKLGE--AGSHIKTVRNVGYMVE 251


>gi|148559307|ref|YP_001258597.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|225627111|ref|ZP_03785149.1| DNA-binding response regulator [Brucella ceti str. Cudo]
 gi|254701398|ref|ZP_05163226.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513]
 gi|254707679|ref|ZP_05169507.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10]
 gi|254709738|ref|ZP_05171549.1| DNA-binding response regulator [Brucella pinnipedialis B2/94]
 gi|254713741|ref|ZP_05175552.1| DNA-binding response regulator [Brucella ceti M644/93/1]
 gi|254717201|ref|ZP_05179012.1| DNA-binding response regulator [Brucella ceti M13/05/1]
 gi|254718753|ref|ZP_05180564.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|256031228|ref|ZP_05444842.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1]
 gi|256159331|ref|ZP_05457121.1| DNA-binding response regulator [Brucella ceti M490/95/1]
 gi|256254636|ref|ZP_05460172.1| DNA-binding response regulator [Brucella ceti B1/94]
 gi|256369043|ref|YP_003106551.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260168364|ref|ZP_05755175.1| DNA-binding response regulator [Brucella sp. F5/99]
 gi|261219017|ref|ZP_05933298.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261221811|ref|ZP_05936092.1| FeuP [Brucella ceti B1/94]
 gi|261315175|ref|ZP_05954372.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317269|ref|ZP_05956466.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261321483|ref|ZP_05960680.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261751937|ref|ZP_05995646.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261757824|ref|ZP_06001533.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99]
 gi|265983731|ref|ZP_06096466.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|265988307|ref|ZP_06100864.1| FeuP [Brucella pinnipedialis M292/94/1]
 gi|265997775|ref|ZP_06110332.1| FeuP [Brucella ceti M490/95/1]
 gi|306838729|ref|ZP_07471564.1| two component transcriptional regulator [Brucella sp. NF 2653]
 gi|306842126|ref|ZP_07474795.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306845210|ref|ZP_07477786.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|148370564|gb|ABQ60543.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|225617946|gb|EEH14990.1| DNA-binding response regulator [Brucella ceti str. Cudo]
 gi|255999203|gb|ACU47602.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260920395|gb|EEX87048.1| FeuP [Brucella ceti B1/94]
 gi|260924106|gb|EEX90674.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294173|gb|EEX97669.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296492|gb|EEX99988.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261304201|gb|EEY07698.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261737808|gb|EEY25804.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99]
 gi|261741690|gb|EEY29616.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262552243|gb|EEZ08233.1| FeuP [Brucella ceti M490/95/1]
 gi|264660504|gb|EEZ30765.1| FeuP [Brucella pinnipedialis M292/94/1]
 gi|264662323|gb|EEZ32584.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|306274369|gb|EFM56176.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|306287713|gb|EFM59144.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306406216|gb|EFM62460.1| two component transcriptional regulator [Brucella sp. NF 2653]
          Length = 229

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR    +++  
Sbjct: 68  RSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEF 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y   FD   
Sbjct: 128 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + +LRK    K+G D +++ R +GY +
Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 216


>gi|293374574|ref|ZP_06620892.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292646807|gb|EFF64799.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 230

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 27/238 (11%)

Query: 1   MFVLIDD--------RALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA 51
           +FV+ DD        R L K+GY +  F +     E FN L+           D   ++ 
Sbjct: 4   VFVIDDDANIRQLILRYLEKEGYKVTAFKNAEHVFEAFNMLQ----------PDALVLDI 53

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            + G  +  L+L + IR  SQVP+I +S        +   + G DD ++KP   RE+L R
Sbjct: 54  MMPGTMDG-LDLCKKIRTVSQVPIIFVSAKDEAVDRIIGLELGADDYLSKPFSPRELLVR 112

Query: 112 VAAIYRRLK---VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           +  I+RR++   VS++   T  I   ++    R   V+ +   L   E  +L YL+ N+ 
Sbjct: 113 LKIIFRRIEPVMVSDHETTTYQIKDLKIDDSKRVCSVKDKELSLTNNEYMLLAYLVKNKN 172

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
               +  +   I+G +D   E  +++  + +LRKKL++      + +    GY ID N
Sbjct: 173 ISFTRENLIQNIWG-YDYVGESRMIDDLVKRLRKKLKSFDAQVEITTVWGYGYRIDDN 229


>gi|260588461|ref|ZP_05854374.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331082261|ref|ZP_08331388.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541335|gb|EEX21904.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330403055|gb|EGG82620.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 225

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 76/144 (52%), Gaps = 3/144 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R IR  S++P+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR    
Sbjct: 66  VCREIRKDSKIPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTSAI 125

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++    G I +        + G+   L  +E  +L Y + N+G  +++ +I ++++  
Sbjct: 126 GSDDILSAGGIEINKTSHTASIDGKTMDLSYKEFELLTYFLENQGIALSREKILNSVWN- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D   +   +++H+ KLR K+  K
Sbjct: 185 YDYFGDARTIDTHVKKLRSKIGAK 208


>gi|222056727|ref|YP_002539089.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221566016|gb|ACM21988.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 226

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 6/199 (3%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRIIRAHSQVPLIGISDYPS 83
           EGF +L F    Q  +     A++  ++  G   +   EL + IR    VP+I ++    
Sbjct: 25  EGFETLCFPSGTQVVSSLADHAVDLIILDVGLPDMSGFELCKQIRQLRSVPIIFLTARAD 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPIRVFSDGRDPEV 142
               +   + G DD + KP   RE+ ARV A+ RR    N  +  TG   V    R    
Sbjct: 85  EIDRIVGLEIGADDYITKPFSPREVSARVKAVLRRTGTGNKPSPCTGTFAVNESKRQISY 144

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            G V  L R E  IL+  +   G   ++ Q+   ++   D +++   +++HI  +R KLR
Sbjct: 145 LGRVLDLSRYEFDILKTFIRRPGHVFSRDQLMQIVWEHPDCSLDRT-IDAHIKNIRAKLR 203

Query: 203 N-KLGFDPVDSKRFLGYSI 220
             + G DP+ + R  GY++
Sbjct: 204 TIEPGKDPIVTYRGTGYAL 222


>gi|294851972|ref|ZP_06792645.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|294820561|gb|EFG37560.1| two-component system protein [Brucella sp. NVSL 07-0026]
          Length = 210

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR    +++  
Sbjct: 49  RSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEF 108

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y   FD   
Sbjct: 109 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 166

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + +LRK    K+G D +++ R +GY +
Sbjct: 167 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 197


>gi|307721598|ref|YP_003892738.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas autotrophica DSM 16294]
 gi|306979691|gb|ADN09726.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas autotrophica DSM 16294]
          Length = 218

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 26/219 (11%)

Query: 8   RALVKDGYI---ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           R   +DGYI   AL G+DG  L G NS             DV  ++  L  K    +E+ 
Sbjct: 18  RGFDEDGYIVDSALDGEDGEYLAGMNSY------------DVIIMDWMLPYKSG--IEIT 63

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           + +R      P++ +S    ++  +     G DD + KP  ++E++ARV A++RR  +SN
Sbjct: 64  KSLREKKITTPILILSAKGEIEDKVTGLQHGADDYLAKPFSYKELVARVEALHRR-DISN 122

Query: 124 --NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N    G I + SD +      E   L  +E  +L +L+ ++   V+   I   ++   
Sbjct: 123 GVNLITLGNIIINSDTKTVRKDDENIELSAKEYELLLFLIKHKNGFVSNAMIEEQLWN-N 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E +  NV++  I  LRK    KLG + + S R +GY I
Sbjct: 182 QEYINSNVIQVTIYHLRK----KLGKEFIKSNRGIGYKI 216


>gi|284047511|ref|YP_003397850.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951732|gb|ADB46535.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 225

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 7/171 (4%)

Query: 37  WLQSSARE-DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           W    A++ D+  ++  L G+ G  +L+  R  +A S +P+I ++   S    +   D+G
Sbjct: 38  WKALEAKQPDLVLLDIMLPGESGLDILKKLRDSQATSGLPVIMLTARTSEYDVVTGLDAG 97

Query: 95  VDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            DD ++KP    E+L+RV A+ RR         N    G I +         QG+   L 
Sbjct: 98  ADDYISKPFGIMELLSRVKAVLRRGGRQKPQDRNLLVCGDITLDLKKHRVTTQGQPCELT 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +E  +L YLMAN G  +++ QI  A++  F  A E   ++ HI  LR+KL
Sbjct: 158 VKEFDLLHYLMANAGIVLSRDQIMEAVWS-FSYAGESRTIDMHIRSLRQKL 207


>gi|163751031|ref|ZP_02158262.1| DNA-binding response regulator [Shewanella benthica KT99]
 gi|161329192|gb|EDQ00191.1| DNA-binding response regulator [Shewanella benthica KT99]
          Length = 237

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 12/153 (7%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129
           P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR   S  +A      G
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFHPEELIARLNALIRR---SAGKASPLVYNG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  + +   + +  G++  L   E ++ E+ M + G+  +KT +   IY   D  ++ NV
Sbjct: 131 PFSINTSTLEVKKSGQLMNLSSSEYKLFEFFMLHPGEVKSKTVLIEHIYDQ-DFDLDSNV 189

Query: 190 VESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
           +E  I +LRKKL   N+LG   +++ R  GY +
Sbjct: 190 IEVFIRRLRKKLDPDNQLGL--IETLRGQGYRL 220


>gi|126664543|ref|ZP_01735527.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
 gi|126630869|gb|EBA01483.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
          Length = 226

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 15/191 (7%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVD 96
           + +S   D+  ++  L   G   L + + +RA  +QVP++ +S    +   ++    G D
Sbjct: 39  MAASEEYDIMIVDRML--PGMDGLAIIKTVRATGNQVPILILSALGDVDDRVEGLRGGGD 96

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLP 150
           D + KP    E+LAR+ ++ RR   +   AET  +   +D       R  +  G+   + 
Sbjct: 97  DYLTKPFSFTELLARIESLIRR---NRQAAETETVLHVADLEMDLLARTVKRAGQNIDVQ 153

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209
            RE R+LEYLM N G+ V +T +   ++   FD   + NV++ HIS+LR K+  +     
Sbjct: 154 PREFRLLEYLMRNAGQVVTRTMLLEKVWDYHFDP--QTNVIDVHISRLRAKIDKEFDTPL 211

Query: 210 VDSKRFLGYSI 220
           + + R  GY +
Sbjct: 212 LQTVRGAGYML 222


>gi|126699068|ref|YP_001087965.1| two-component response regulator [Clostridium difficile 630]
 gi|115250505|emb|CAJ68329.1| Two-component response regulator [Clostridium difficile]
          Length = 234

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 22/195 (11%)

Query: 40  SSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91
           SS +E +S+ E  +I        G G    EL + IR  SQVP+I ++        +   
Sbjct: 35  SSGKEMISSNEYSMILLDVTLPDGTG---YELCQYIRGFSQVPIIFLTACDEEVNIVMGL 91

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--- 148
           D G DD + KP   RE+++R+ A+ RR    N   E   I  F D     ++  V+    
Sbjct: 92  DIGGDDYITKPFRIRELISRIKAVLRR--KGNTSEENKKILKFGDLSIYTLEARVYKNDK 149

Query: 149 ---LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L   E ++L  L+ N+   +++TQI   ++ +  + V +N +  +I +LR+K+ + L
Sbjct: 150 EIFLTSVEYKLLLILIQNKNTVLSRTQILEKLWDVTYDFVNDNTLTVYIKRLREKIGDDL 209

Query: 206 GFDP--VDSKRFLGY 218
             +P  +++ R +GY
Sbjct: 210 C-EPIYIETVRGIGY 223


>gi|116249330|ref|YP_765171.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115253980|emb|CAK12376.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 222

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 10/160 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ ++ +++P+I ++   SL   +   DSG DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LKRLRQSGNKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRR---G 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +RA +    G +R     R   V  E+  L  RE  +LE L+   G  V+K  +  +++
Sbjct: 120 QDRASSEITVGNLRFSGGTRQFFVADELLQLTPREYAVLEQLVMKLGNTVSKAALSESVF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G FD+  + + +E ++ +LRKKL +      + + R LGY
Sbjct: 180 G-FDDEADPSAIEIYVHRLRKKLESS--SVQIATLRGLGY 216


>gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
 gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
          Length = 226

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  SQ P+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR  V
Sbjct: 65  QVCREIRQSSQTPVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAILRRSHV 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G I++     + + +G+   L  +E  +L Y + N G  +++ +I + ++ 
Sbjct: 125 LGAEEIIDAGGIQINKAAHEVKAEGKQIDLSYKEFELLVYFVENEGIALSREKILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL +K
Sbjct: 185 -YDYFGDARTIDTHVKKLRNKLGDK 208


>gi|206562188|ref|YP_002232951.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038228|emb|CAR54181.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 18/172 (10%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G  +L   R  R H+  P++ ++   ++   +    +G DD + KP    E++AR  A+
Sbjct: 58  SGTDLLGWIRKRRDHT--PVLVMTARDTVADRVSGLSAGADDYLGKPFDLAELIARCRAL 115

Query: 116 YRRLKV-SNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVA 169
            RR +    +  E G + V     DP +       E   L  RE  +L  L+AN+G+ ++
Sbjct: 116 VRRSQGRGTDTIEYGELTV-----DPALMTVVRGAERIALTSRECALLVELLANQGRPLS 170

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + Q+  ++YG ++E +E N +E H+S LRK    KLG + + + R +GY ++
Sbjct: 171 RAQLQDSLYG-WNEEIESNAIEVHVSNLRK----KLGAELIRTIRGVGYVVE 217


>gi|160896325|ref|YP_001561907.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361909|gb|ABX33522.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 224

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 9/225 (4%)

Query: 1   MFVLI-DDRALVKDGYI-ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M +LI +D  ++ DG + +L G   V     N  E +  L +S+  D+  ++  L     
Sbjct: 1   MRILIAEDDQVLADGLLRSLRGSGAVVSHVANGSEADTALMTSSEFDLLILDLGL--PKM 58

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LE+ + +R     +P++ ++   S++  +   D G DD + KP    E+ ARV A+ R
Sbjct: 59  HGLEVLKKLRGRGDALPVLILTAADSVEERVQGLDYGADDYMAKPFALSELEARVRALTR 118

Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R +  +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   
Sbjct: 119 RGMGGASSTIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVER 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +    DE V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 179 LCEWGDE-VSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220


>gi|325838529|ref|ZP_08166551.1| putative transcriptional regulatory protein CssR [Turicibacter sp.
           HGF1]
 gi|325490824|gb|EGC93126.1| putative transcriptional regulatory protein CssR [Turicibacter sp.
           HGF1]
          Length = 230

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 27/238 (11%)

Query: 1   MFVLIDD--------RALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA 51
           +FV+ DD        R L K+GY +  F +     E FN L+           D   ++ 
Sbjct: 4   VFVIDDDANIRQLILRYLEKEGYKVTAFENAEHVFEAFNMLQ----------PDALVLDI 53

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            + G  +  L+L + IR  SQVP+I +S        +   + G DD ++KP   RE+L R
Sbjct: 54  MMPGTMDG-LDLCKKIRTVSQVPIIFVSAKDEAVDRIIGLELGADDYLSKPFSPRELLVR 112

Query: 112 VAAIYRRLK---VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           +  I+RR++   VS++   T  I   ++    R   V+ +   L   E  +L YL+ N+ 
Sbjct: 113 LKIIFRRIEPVMVSDHETTTYQIKDLKIDDSKRVCSVKDKELSLTNNEYMLLAYLVKNKN 172

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
               +  +   I+G +D   E  +++  + +LRKKL++      + +    GY ID N
Sbjct: 173 ISFTRENLIQNIWG-YDYVGESRMIDDLVKRLRKKLKSFDAQVEITTVWGYGYRIDDN 229


>gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 239

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  L   DG           EE L+ +  EDV      ++  G    EL R IRA
Sbjct: 23  LSKEGYEVLKAYDG-----------EEALKIANDEDVDMFIVDIMLPGIDGFELVRKIRA 71

Query: 70  ---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
              +   P+I +S        +   + G DD + KP   RE+LARV A++RRL  +    
Sbjct: 72  IEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFRRLSAATQSK 131

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRVAKTQIFSAI 177
           E  P ++ +  RD E+  E + +  R +++         L +L  N GK  ++  +   +
Sbjct: 132 EERPKKIIA--RDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDVLLDKL 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +G +D   +   V+ HI +LR K+      DP + K
Sbjct: 190 WG-YDYYGDTRTVDVHIRRLRTKIEE----DPSNPK 220


>gi|147676370|ref|YP_001210585.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272467|dbj|BAF58216.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 227

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 5/162 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+++    V +I ++    +   +   + G DD + KP    E+LAR+ A  R  + 
Sbjct: 67  EVCRMLKKMENVAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHARVRN-QF 125

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N   E   GP ++    ++ + +G V  L   E  +L+YL+ N G  ++K  I   ++G
Sbjct: 126 PNLFGEVAIGPFQIDDRRKEIKFEGRVLELSPTEYELLKYLVLNHGLVLSKRMILDKVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D A EEN+VE ++  LR+KL++K     + + R  GY +D
Sbjct: 186 -YDFAGEENIVEVYVRSLREKLKDK-DHQIIRTLRGAGYRVD 225


>gi|313888128|ref|ZP_07821802.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845818|gb|EFR33205.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 224

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 22/219 (10%)

Query: 9   ALVKDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELP 64
            LV  GY    AL GD+G  +   NS             D+  ++  L GK G ++LE  
Sbjct: 19  GLVHSGYAVDTALDGDEGSFMAFTNSY------------DLIILDVNLPGKNGFEILEEI 66

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R      +V +I ++    +   +   D G +D + KP H  E+ AR+ ++ RR   +S+
Sbjct: 67  R--ERDREVNVIMLTALSDVDDRVRGLDLGANDYILKPFHFEELKARIRSLLRRKTSISD 124

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +      +   +  R   +  E   L  +E  ILEYL  N G+ V   ++   ++   DE
Sbjct: 125 SIIRAHGVEFDTAKRTFAIDKEALKLTAKEAGILEYLFFNLGRYVTAEELMDHVWN--DE 182

Query: 184 A-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  NVV  H+S LRKKL++KLG + + ++   GY ID
Sbjct: 183 VDLFSNVVRVHMSALRKKLKDKLGKNIIRNEIGKGYIID 221


>gi|255525477|ref|ZP_05392414.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188589|ref|ZP_06856977.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
 gi|255510842|gb|EET87145.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296046853|gb|EFG86299.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
          Length = 227

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 6/151 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+   E+ R IR     P+I ++     +  +     G DD ++KP   R++ AR++A  
Sbjct: 57  GKNGYEVCREIRDIVNCPIIFLTAKSEEEDLITGLGVGGDDYISKPFSLRQLKARISAHL 116

Query: 117 RRLKVS-NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR + S NN          + +   GR     GEV PL ++E  ++E L  N G+  +K 
Sbjct: 117 RRDQRSFNNENRVNLYFENLNIDLKGRTIFCMGEVIPLTKKEFGVIELLAVNCGQVFSKE 176

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           QI+  I+G +D   +   V  HI K+R KL+
Sbjct: 177 QIYEKIWG-YDAEGDSATVAEHIKKIRYKLK 206


>gi|121996908|ref|YP_001001695.1| two component transcriptional regulator [Halorhodospira halophila
           SL1]
 gi|121588313|gb|ABM60893.1| two component transcriptional regulator, winged helix family
           [Halorhodospira halophila SL1]
          Length = 229

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETG 129
           Q+P+I ++     +  +  FDSGVDD V KP   RE+ ARV A+ RR     ++   E  
Sbjct: 76  QIPIILLTARGEEEDKVRGFDSGVDDYVTKPFSPRELAARVKAVLRRTAPSTADTPLEAA 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +R+          G+   L   E R+L + MA+  +   +TQ+   ++G  +  VEE  
Sbjct: 136 GLRLDPVSHRVTGHGQSLELGPTEYRLLRFFMAHPDRVFTRTQLLDQVWGT-NVYVEERT 194

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+ HI +LRK L        V + R  GY
Sbjct: 195 VDVHIRRLRKILATTGHDGLVQTVRGAGY 223


>gi|325660770|ref|ZP_08149398.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085492|ref|ZP_08334577.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472844|gb|EGC76054.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330407730|gb|EGG87228.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 219

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 17/217 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           +AL KDG+I     DG   E    +E        +R D+  ++  +   G     L R I
Sbjct: 19  KALEKDGHIVQTVQDG---EVVRQMEL-------SRYDLILLDVMM--PGIDGFTLCREI 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA 126
           R     P++ ++     +  +    SG DD + KP    E+ ARV A  RR L+      
Sbjct: 67  RETVDCPIVFLTAKTLEEDLMAGLGSGADDYICKPFGLGELRARVQAHLRRELREKKQVF 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               +  +   +    + +  PL + E +I EYL  + G+ +++ QI+ A++G   E+ +
Sbjct: 127 AVSGLHFYMQAKKVMAKDQKVPLTKSEYQICEYLALHHGQTLSREQIYEAVFGYEGES-D 185

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + +  HI  +R KL  K+  +P+++   +GY   WN
Sbjct: 186 ASAITEHIKNIRAKL-IKVQAEPIETVWGMGYR--WN 219


>gi|260890602|ref|ZP_05901865.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
 gi|260859647|gb|EEX74147.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
          Length = 226

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 12/149 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  SQVP+I ++    +   +  FD G DD + KP  + E+LAR+ A+ RR K
Sbjct: 62  MEVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTK 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172
            S        I  F D        EVF         L +RE  +L++L+ N+G  +++ +
Sbjct: 122 KS---VVHKGIFEFEDLTINYSTYEVFREYGKNLIQLSKREFELLDFLVLNKGIVLSRDK 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I   ++G FD    +N+++ +I  LR K+
Sbjct: 179 ILEEVWG-FDYIGNDNILDLYIKYLRDKI 206


>gi|255008379|ref|ZP_05280505.1| putative two-component response regulator [Bacteroides fragilis
           3_1_12]
 gi|313146101|ref|ZP_07808294.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
 gi|313134868|gb|EFR52228.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
          Length = 229

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 8/140 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---- 123
           +  +QVP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR   S+    
Sbjct: 72  KKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTATSDMEKV 131

Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             +     + +    +   + GE  PL ++E  IL  L+ N+G+  ++  I S I+   D
Sbjct: 132 PEQLSYQSLVIDITKKKVSIDGEEVPLTKKEFEILFLLLQNKGRVFSREDILSRIWS--D 189

Query: 183 EA-VEENVVESHISKLRKKL 201
           E  V +  ++ +I++LRKK+
Sbjct: 190 EVYVLDRTIDVNITRLRKKI 209


>gi|223984503|ref|ZP_03634635.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
           12042]
 gi|223963489|gb|EEF67869.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
           12042]
          Length = 224

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 3/139 (2%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           I + H  VP+I +S        +  FD GVDD V KP   +E++ R+ AI +R   S  +
Sbjct: 67  IRKTHENVPVILLSALGEEYDKIHGFDLGVDDYVVKPFSPKELMMRIHAILKRTSQSEKK 126

Query: 126 A--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              +   + +   GR  +++ E   L  +E  +L YL+ NRG  + + ++   ++G +D 
Sbjct: 127 ELIKINDLTIDFTGRIVKIKDEKLNLSPKEYDLLFYLVKNRGIALTREKLLQNVWG-YDF 185

Query: 184 AVEENVVESHISKLRKKLR 202
             +E  +++HI  LRK LR
Sbjct: 186 FGDERTLDTHIKLLRKNLR 204


>gi|330721286|gb|EGG99372.1| DNA-binding response regulator [gamma proteobacterium IMCC2047]
          Length = 218

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 6/168 (3%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            ++  G  +  L +I +A   VP+I ++    +   +   ++G DD + KP    E+ AR
Sbjct: 52  LMLPDGSGIELLIKIRKAGKTVPVIILTARDQISDRIKGLNAGADDYLVKPFDLSELSAR 111

Query: 112 VAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +AA+ RR   + N   + GP+ +          G    L  RE  + E  +   G  ++K
Sbjct: 112 IAAVSRRYAGNPNPLLQIGPLEIDLSKHLISRAGTSINLTAREWALFEAFIQRPGTLISK 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +Q+   +Y  F   +E N +E +IS+LRK    KLG D +++ R LGY
Sbjct: 172 SQLEDHLYA-FGTEIESNTIEVYISRLRK----KLGRDLLETVRGLGY 214


>gi|226313242|ref|YP_002773136.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226096190|dbj|BAH44632.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 234

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 25/236 (10%)

Query: 1   MFVLIDDRALV--------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           +F++ DD+A+V        K+GY      DG   EG    E     Q+  R D+  ++  
Sbjct: 8   IFIIEDDQAIVEMVETYLTKEGYAVTVAGDGD--EGLRKFE-----QAQGRFDLLLVD-- 58

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+      +E+ R IRA+S VP++ +S   S          G DD + KP    E+ AR+
Sbjct: 59  LMMPKIDGMEVIRRIRAYSHVPILIMSAKDSDIDKALGLGFGADDYIEKPFSMIELSARL 118

Query: 113 AAIYRR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            AI RR      ++  +N    G +R+  D      Q E   L  +E  IL    A+  +
Sbjct: 119 KAIIRRATQYASVETKHNTLNMGDLRIDFDSFAVFKQEEPIKLTSKEFEILRLFAAHPNR 178

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              K QI++ ++   D   +ENV+  H+S+LR K+ +    +P   K   G    W
Sbjct: 179 VFTKAQIYAKVWN-DDYYGDENVINVHMSRLRDKIEDNPS-EPRYIKTLWGIGYKW 232


>gi|255100490|ref|ZP_05329467.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306432|ref|ZP_05350603.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 241

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 22/195 (11%)

Query: 40  SSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91
           SS +E +S+ E  +I        G G    EL + IR  SQVP+I ++        +   
Sbjct: 42  SSGKEMISSNEYSMILLDVTLPDGTG---YELCQYIRGFSQVPIIFLTACDEEVNIVMGL 98

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--- 148
           D G DD + KP   RE+++R+ A+ RR    N   E   I  F D     ++  V+    
Sbjct: 99  DIGGDDYITKPFRIRELISRIKAVLRR--KGNTSEENKKILKFGDLSIYTLEARVYKNDK 156

Query: 149 ---LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L   E ++L  L+ N+   +++TQI   ++ +  + V +N +  +I +LR+K+ + L
Sbjct: 157 EIFLTSVEYKLLLILIQNKNTVLSRTQILEKLWDVTYDFVNDNTLTVYIKRLREKIGDDL 216

Query: 206 GFDP--VDSKRFLGY 218
             +P  +++ R +GY
Sbjct: 217 C-EPIYIETVRGIGY 230


>gi|304393600|ref|ZP_07375528.1| transcriptional activator protein CopR [Ahrensia sp. R2A130]
 gi|303294607|gb|EFL88979.1| transcriptional activator protein CopR [Ahrensia sp. R2A130]
          Length = 228

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 9/134 (6%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           +G DD + KP    E+LARV A+ RR  ++ +   +  G + +    R  E  GE   L 
Sbjct: 95  AGGDDYLTKPYAQTELLARVEALARRSTVQATETSSSVGDLSLDRLSRKAERSGEEIILQ 154

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209
            RE R+L+YLM + G+ V +T +   ++ L FD   + NV++ H+S+LR K+    GFD 
Sbjct: 155 PREYRLLDYLMRHSGQLVTRTMLLENVWELNFDP--QTNVIDVHVSRLRSKIDK--GFDK 210

Query: 210 --VDSKRFLGYSID 221
             + + R  GY ++
Sbjct: 211 PLLHTVRGKGYRLE 224


>gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 241

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)

Query: 39  QSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDD 97
           +++ R+D   I   L+  G    E+   +R+   + P+I ++   + +  +    SG DD
Sbjct: 40  ETALRQDFDLILLDLMLPGMNGFEIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADD 99

Query: 98  VVNKPIHHREILARVAAIYRR----------LKVSNNRAETGPIRVFSDGRDPEVQGEVF 147
            + KP    E+LARVAA+ RR           +  N++   G + ++ +  +  + GE  
Sbjct: 100 YITKPFGVAELLARVAAVLRRSTGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPI 159

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L  +E  +L YL    G  + +  + +A++G FD    +  V+ H+S LRKKL      
Sbjct: 160 TLRPKEFEVLLYLARKPGVVMTRDDLMNAVWG-FDYIGGQRTVDVHVSSLRKKLE----L 214

Query: 208 DP----VDSKRFLGYSIDWN 223
           DP    +DS R +GY +  N
Sbjct: 215 DPQSVHIDSIRGVGYKLVVN 234


>gi|325681430|ref|ZP_08160956.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324106920|gb|EGC01210.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 226

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 3/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NN 124
           IR  SQ P+I IS    ++T L+    G DD + KP    E+L R+  + RR   S  ++
Sbjct: 68  IRETSQTPVIVISAKSMMETKLEVLRLGADDYIIKPFDIDEVLVRIEVVLRRTAGSQHSD 127

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E G I + +      + G    L  +E  +L   M +  K   K +++ +++      
Sbjct: 128 SLEVGGIVLNNTENSVTLDGTAVRLTAKELMLLRLFMEHPQKVYTKAELYESVWN-DTYY 186

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E+N +  H+S LR KL+   G D +D+   +GY +
Sbjct: 187 YEDNTINVHVSNLRSKLKKAGGRDFIDTVWGIGYRL 222


>gi|80973243|gb|ABB53349.1| VanRB [Eggerthella lenta]
          Length = 219

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL   +    + + R +GY ++
Sbjct: 182 DFESDGSTVHTHIKNLRAKLPENI----IKTIRGVGYRLE 217


>gi|24379561|ref|NP_721516.1| putative response regulator CiaR [Streptococcus mutans UA159]
 gi|290580438|ref|YP_003484830.1| putative response regulator [Streptococcus mutans NN2025]
 gi|24377506|gb|AAN58822.1|AE014950_5 putative response regulator CiaR [Streptococcus mutans UA159]
 gi|254997337|dbj|BAH87938.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 224

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G + V +      V G+   L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENNLTYGELTVDTATNTTMVNGKEVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + K+QIF  I+G FD     +VVE ++SK+RKKL++      
Sbjct: 151 LGKEFDLLVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVEVYVSKIRKKLKDTTFGKN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|294627534|ref|ZP_06706117.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598165|gb|EFF42319.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 227

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 1/158 (0%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +
Sbjct: 67  LDICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHR 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              + A    +++  D     V G    L + E R+L  L A  G+  ++ Q+   +Y  
Sbjct: 127 HDPHGAPAPGLQIDEDTCRASVDGRTLDLTQVEFRLLRTLAAAPGRVYSREQLMGRLYAD 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               V +  V+SH+  LR+KL +  G D V S    GY
Sbjct: 187 H-RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGY 223


>gi|241888759|ref|ZP_04776065.1| transcriptional regulatory protein DltR [Gemella haemolysans ATCC
           10379]
 gi|241864435|gb|EER68811.1| transcriptional regulatory protein DltR [Gemella haemolysans ATCC
           10379]
          Length = 225

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 2/175 (1%)

Query: 48  AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107
           AI   ++ + + V  + ++       P++ ++    ++  +   DSG DD + KP   RE
Sbjct: 48  AILDVMMPQMDGVTVVKKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVTRE 107

Query: 108 ILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           +LARV ++ RR    ++N  E G + +     +   + +   L  +E +++E LM N G 
Sbjct: 108 LLARVRSMTRRQATFTSNVLELGNVSLSKYTFELSTEKDKVRLSNKEYQMMEMLMRNPGN 167

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   Q    I+G +D   E NVV  +IS LRKKL+       + + R +GY+++
Sbjct: 168 VIQTEQFLERIWG-YDSDSEINVVWVNISYLRKKLKALDANIHIKATRNVGYTLE 221


>gi|227832117|ref|YP_002833824.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184032|ref|ZP_06043453.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453133|gb|ACP31886.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 232

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 22/202 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  L   DG S            L+  A  +V  +   L+  G    ++ + +R 
Sbjct: 21  LRKEGFDVLLAPDGPS-----------ALEQFAANNVDIVLLDLMLPGMSGTDVCKQLRT 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128
            S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR +  S+  AE 
Sbjct: 70  TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGQDASSEHAEE 129

Query: 129 GPI-RVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            P  ++   GR   D E     V GE   +P +E  +LEYL+ N G+ + + Q+   I+G
Sbjct: 130 EPDEQILEGGRVRMDVERHTVLVAGEPVSMPLKEFDLLEYLLRNAGRVLTRGQLIDRIWG 189

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             D   +   ++ H+ +LR K+
Sbjct: 190 -ADYVGDTKTLDVHVKRLRSKI 210


>gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
 gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
          Length = 226

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 25/221 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY A     G   EG ++ E           D+  ++  L   G   +++ R +R+
Sbjct: 21  LKKEGYEAFVAATGP--EGIDTFE-------RGGADLVLLDVML--PGMSGVDVCRELRS 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
            S VP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR       AE G
Sbjct: 70  RSSVPIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVLRR----RGEAEAG 125

Query: 130 PIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GR   D E     V G+   +P +E  +LE LM N G+ + + Q+   ++G  
Sbjct: 126 ESDELVVGRVAMDVERHVVTVGGKGVAMPLKEFELLEMLMRNEGRVLTRMQLIDRVWG-S 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           D   +   ++ HI +LR K+    G    + + R LGY ++
Sbjct: 185 DYVGDTKTLDVHIKRLRAKIEPDPGLPQHILTVRGLGYKLE 225


>gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 17/167 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ R +R  S VP+I ++        +   + G DD + KP   RE+LAR+ A+ RR  
Sbjct: 60  LEVCRRLRQRSSVPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALLRRRS 119

Query: 119 ---LKVSNNRAETGPIRVFSDGR--DPEVQ-----GEVFPLPRRERRILEYLMANRGKRV 168
               ++S+ + E+   ++ S     DP +      G+V  L  RE  +L +L+ N+G   
Sbjct: 120 LIMAEISSQQQESRRQKLVSGDLEIDPAMHQVKRGGKVIQLTPREFDLLTFLVMNKGIVF 179

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +  ++   ++G +DEA++   V  HI  LR+K+ +    DP D KR 
Sbjct: 180 SAERLLEEVWG-YDEALDVRTVPVHIRNLREKIED----DPSDPKRI 221


>gi|209885699|ref|YP_002289556.1| transcriptional regulatory protein QseB [Oligotropha
           carboxidovorans OM5]
 gi|209873895|gb|ACI93691.1| transcriptional regulatory protein QseB [Oligotropha
           carboxidovorans OM5]
          Length = 224

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 10/131 (7%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFP 148
           FD+G DD V KP H  E+LAR+ A+ RR    + ++E     V  D R   V   G    
Sbjct: 91  FDAGADDYVAKPFHLEEVLARIRALLRR-STGHAQSELTCGSVVLDTRTGRVTVDGNPIK 149

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207
           +   E R+L YLM + G+ V++T++   +Y   FD   + N +E  + ++RK    KLG 
Sbjct: 150 MTSHEYRLLAYLMHHAGRVVSRTELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLGV 203

Query: 208 DPVDSKRFLGY 218
           + + + R LGY
Sbjct: 204 EIIQTVRGLGY 214


>gi|148658138|ref|YP_001278343.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570248|gb|ABQ92393.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 20/152 (13%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R IR  S VP+I ++    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DICRQIRRISDVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRNS 120

Query: 119 -LKVSNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            L     R   GP+         +F DGR          L   E R+L YLM N G+ ++
Sbjct: 121 DLVNPVTRISQGPLTLDPIEHTVLFEDGRS-------VVLTPIEFRLLYYLMQNTGRVLS 173

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +QI S ++G +D   E N+V  +I +LR K+
Sbjct: 174 ASQILSKVWG-YDYEGESNLVAVYIRRLRAKI 204


>gi|91199718|emb|CAI78073.1| putative two-component system regulator [Streptomyces ambofaciens
           ATCC 23877]
 gi|96771765|emb|CAI78347.1| putative two-component system regulator [Streptomyces ambofaciens
           ATCC 23877]
 gi|114049989|emb|CAK51006.1| putative two-component system regulator [Streptomyces ambofaciens]
 gi|114050211|emb|CAK51244.1| putative two-component system regulator [Streptomyces ambofaciens]
 gi|117164310|emb|CAJ87852.1| putative two-component system regulator [Streptomyces ambofaciens
           ATCC 23877]
 gi|126347422|emb|CAJ89130.1| putative two-component system regulator [Streptomyces ambofaciens
           ATCC 23877]
          Length = 253

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 6/144 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IRA S+VP++ ++   S    +    +G DD V KP   RE++AR+ A+ RR  
Sbjct: 94  LEVCRAIRAVSRVPVVIVTARQSELDCVLGLQAGADDYVTKPYGLRELMARIEAVMRRAH 153

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      G + +  + R+  V G   PL R+E  +L  L ++    + + Q+   +
Sbjct: 154 WQPAARRYIRRGRLHIDVNSREVTVDGSGIPLTRKEFDLLCLLASHPDTVIPRKQLLKQV 213

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G   ++  +  V++H+S LR KL
Sbjct: 214 WG---DSWSQRTVDTHVSSLRGKL 234


>gi|226946855|ref|YP_002801928.1| phosphate regulon response regulator PhoB [Azotobacter vinelandii
           DJ]
 gi|226721782|gb|ACO80953.1| phosphate regulon response regulator; PhoB [Azotobacter vinelandii
           DJ]
          Length = 229

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 18/210 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G+  LE E   Q+ A     R D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYECLEAENTQQAHAIIVDRRPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++     + +PLI ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTTGIPLIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR    +N    E G +R+        + G+   +   E R+L++ M ++ +   + 
Sbjct: 119 AVLRRTAPGDNETPIEVGGLRLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRG 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 179 QLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|311103838|ref|YP_003976691.1| response regulator 1 [Achromobacter xylosoxidans A8]
 gi|310758527|gb|ADP13976.1| response regulator 1 [Achromobacter xylosoxidans A8]
          Length = 223

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 13/139 (9%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A  + P++ ++    ++  +D  D G DD + KP   RE+ AR+ A+ RR        +T
Sbjct: 69  AGLEAPVLVMTARSEIEDKIDMLDLGADDYLVKPFDLRELEARLRALMRR-----PAGQT 123

Query: 129 GPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             + V+ +       R+  V G    L RRE R+LE L+   G+ VAK ++ + ++ L D
Sbjct: 124 SSLTVYGNLSLDLANRNVSVAGAPLELGRREFRLLEILLGKLGQTVAKERLMNQLFDLDD 183

Query: 183 EAVEENVVESHISKLRKKL 201
             +  N +E  IS+LRKKL
Sbjct: 184 GTL--NALELLISRLRKKL 200


>gi|312113706|ref|YP_004011302.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311218835|gb|ADP70203.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 231

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 3/142 (2%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R    + P++ +S    +   +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRALRVSKIKTPILILSGSGGVDDKVRGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  +TG + V  D +  EV G    L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVIQTGSLIVNLDTKTVEVDGNRVHLTSKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             DE  E  +++  I KLRKKL
Sbjct: 181 GIDEP-ELKIIDVFICKLRKKL 201


>gi|90414318|ref|ZP_01222297.1| Response regulator [Photobacterium profundum 3TCK]
 gi|90324656|gb|EAS41203.1| Response regulator [Photobacterium profundum 3TCK]
          Length = 218

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 6/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R+ +A   +P++ ++    +   +   D G DD + KP    E+LAR+  + RR+   
Sbjct: 63  LRRVRKAGHSLPILILTARDEIDDRVKGLDGGADDYLVKPFALEELLARLRVLIRRVSGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++ + E G + +     D   QG    L + E +IL  L+   G+ ++K  +   ++G +
Sbjct: 123 TDTQLEIGDLSISLKTNDVHYQGNPVKLTKNEFKILATLVTQSGRVLSKESLQQVLHG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D+   +N +E HI  LRKK+  +L    + + R +GY I+
Sbjct: 182 DDLASDNAIEVHIHNLRKKIGGQL----IKNIRGVGYIIE 217


>gi|332297448|ref|YP_004439370.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332180551|gb|AEE16239.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 233

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 108/239 (45%), Gaps = 40/239 (16%)

Query: 1   MFVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEW---LQSSARE--DVSAIEAF 52
             +L++D  L+++   GY+         L+G  ++EF+     L +  RE  D+  ++  
Sbjct: 3   CIMLVEDNTLIREAVAGYL--------QLDGHKTVEFDTGAGVLDAVRREIADLIILDVM 54

Query: 53  LI-GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L  G G     L + IRA S VP+I ++   S    +  F+ G DD + KP   +E++ R
Sbjct: 55  LPDGNG---FALAKSIRAVSAVPIIFLTAKDSESDRILGFELGADDYICKPFSAKELVLR 111

Query: 112 VAAIYRRLKVSNNRAETGP------------IRVFSDGRDPEVQGEVFPLPRRERRILEY 159
           V A+ RR   S   AET P              + +      + G    L   E +IL Y
Sbjct: 112 VQALLRR---SGGSAETVPGASGEWQQGESRATLDTAKHTLAIDGIDVNLTGAEWKILVY 168

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L  N G+ V++ QI S  +  F E   E  V++HI+ LR     KLG   + + R  GY
Sbjct: 169 LAENSGQVVSREQILSECFNYFFEG-SERTVDTHIANLRA----KLGVGWIVTVRGFGY 222


>gi|332992484|gb|AEF02539.1| response regulator [Alteromonas sp. SN2]
          Length = 221

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I + +  +P++ ++        +   D+G DD + KP    E+LAR+  + RRL  S
Sbjct: 63  LKSIRKTNPVLPVLILTARDKTSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLGTS 122

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    T   + + +      +  ++  LPRRE  +L+ L+ N G+ ++K Q+ S +Y  +
Sbjct: 123 SESVITVQNVSLDTKHHTLTIDSDIVHLPRRELMLLKALIENAGRILSKHQLESKLYE-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E V  N +E HIS LRKK+        + + R +GY I
Sbjct: 182 GEEVSSNTIEVHISNLRKKMPENF----IRTIRGVGYCI 216


>gi|167761520|ref|ZP_02433647.1| hypothetical protein CLOSCI_03931 [Clostridium scindens ATCC 35704]
 gi|167661186|gb|EDS05316.1| hypothetical protein CLOSCI_03931 [Clostridium scindens ATCC 35704]
          Length = 241

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  + +R  S V LI ++        ++ +D+G DD + KP     ++++V A+ RR++
Sbjct: 72  LEFGQSVRKVSDVYLIFLTALDQEVDIVNGYDAGADDYITKPFSLMVLISKVNALMRRIE 131

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++   N   +G ++V+        + +   L ++E ++L Y + +  + ++K QI  ++
Sbjct: 132 STHEEGNVLTSGSMQVWCKEMKVFQKEQELSLSKKEIQLLLYFLEHPKQIISKEQILESV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + +  + V++N V   IS+L+KKL  +  ++ + + R +GY
Sbjct: 192 WDMDGQFVDDNTVPVTISRLKKKLATEEDYEYIKNIRGIGY 232


>gi|325681015|ref|ZP_08160547.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
 gi|324107244|gb|EGC01528.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
          Length = 233

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 21/199 (10%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67
           L KDGY  +   DG  ++  FN+L          + D+  ++  L G  G +V    R I
Sbjct: 23  LEKDGYGVILAHDGEEAVVKFNAL----------KPDIILLDIMLPGIDGWQVC---REI 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S VP+I I+        +   + G DD + KP   +E++AR+ A+YRR+  S+  +E
Sbjct: 70  RKKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQSSAESE 129

Query: 128 TGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              ++     V     +  V G+V   P +E  +L +L +N  +   + Q+   ++G F+
Sbjct: 130 IKEVKYDKLSVNMTRYELRVDGKVLDTPPKELELLFHLASNPNRVYTRDQLLDEVWG-FE 188

Query: 183 EAVEENVVESHISKLRKKL 201
              +   ++ H+ +LR+KL
Sbjct: 189 YYGDSRTIDVHVKRLREKL 207


>gi|258543034|ref|YP_003188467.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634112|dbj|BAI00088.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637172|dbj|BAI03141.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640224|dbj|BAI06186.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643281|dbj|BAI09236.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646336|dbj|BAI12284.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649389|dbj|BAI15330.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652375|dbj|BAI18309.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655433|dbj|BAI21360.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-12]
          Length = 225

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 16/192 (8%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L +S + DV  ++  L G  E +  L  +   ++  P++ +S    +   +    +G DD
Sbjct: 39  LATSEKFDVIILDRMLPGGVEGLHILQTLRNQNNTTPVLLLSALADVDEKVAGLKAGGDD 98

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPL 149
            V KP    E+ AR+ A+ RR     NR E  P    + G        R+ +  G+   L
Sbjct: 99  YVTKPFSFSELQARLEALVRR-----NRNEAQPQTRLTIGDLEIDLLSRNVKRAGQKIEL 153

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
             RE R+LE+LM + G+ V +T +   ++   FD   + NV++ HIS+LR+K+       
Sbjct: 154 QPREFRLLEFLMRHAGQVVTRTMLLEGVWDYHFDP--QTNVIDVHISRLRQKIDRPFHHP 211

Query: 209 PVDSKRFLGYSI 220
            V + R  GY +
Sbjct: 212 LVHTIRNAGYML 223


>gi|291087261|ref|ZP_06345880.2| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|313115944|ref|ZP_07801371.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|291075611|gb|EFE12975.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|310621708|gb|EFQ05236.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 236

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 83  AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP++E  +L  L A+ G+   K Q+   ++G   EA + 
Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWGYETEA-DP 201

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++L++   F+ V + R +GY +
Sbjct: 202 HTIEVHIGRIRERLKDNPDFEIV-TMRGIGYKV 233


>gi|82701839|ref|YP_411405.1| two component transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82409904|gb|ABB74013.1| two component transcriptional regulator, winged helix family
           [Nitrosospira multiformis ATCC 25196]
          Length = 233

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 6/168 (3%)

Query: 57  GEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G   + L R +R  AH   P++ ++   +L+  L  FD G DD + KP   +E+ AR+ A
Sbjct: 62  GADGITLCRKLRQEAHLDTPVLMLTARDTLEDKLKGFDCGADDYLVKPFALKEVEARLVA 121

Query: 115 IYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +++R   KV++   ET  +            G    LP +   +L  +M+  G+  ++ +
Sbjct: 122 MHKRRKGKVTSRTLETEDLSFDPKTLTIRFAGANVKLPPKCIGLLAVIMSEPGRVFSRRE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + S ++G   E    + + SH+ +LR+ L    G+DP+++   LGY +
Sbjct: 182 LESEVWGDVQET--SDTLRSHMHELRRALTRAGGYDPIETVHGLGYRL 227


>gi|77361690|ref|YP_341265.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876601|emb|CAI87823.1| putative response regulator in two-component regulatory system with
           CusS, regulation of copper resistance [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 224

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 7/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +L+  R     S+V ++     P  Q  ++    G DD + KP    E+ ARV A+ 
Sbjct: 59  GMSILQALRSSNNQSRVLILSARSEP--QDKINGLMKGADDYLTKPFSFEELHARVLALL 116

Query: 117 RRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR  + N  N    G   +    +    Q     L R E +I+E L  N  +RV   ++ 
Sbjct: 117 RRGSLQNQQNTLTVGDCVLDLSLKTLHYQQHAIELTRNEYKIIECLF-NAPERVLGLELI 175

Query: 175 S-AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           S A+ G FD  + +N +E+HIS +RKK+R   G  P+ +KR  GY
Sbjct: 176 SEAVVGQFD-MLSKNALEAHISTIRKKVRQFDGELPIKNKRGFGY 219


>gi|150018489|ref|YP_001310743.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904954|gb|ABR35787.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 226

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R+ S +P+I +S    + T +D    G DD V KP    EILARV +  RR   
Sbjct: 63  EILRELRSFSNIPVIVLSAKDMVHTKVDLLRLGADDYVTKPFDLNEILARVESNLRRCSS 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L +  +      I ++ + +   V G    L  +E  IL  L+++  K  +K  +F +I
Sbjct: 123 DLNIKKSILTYKDITLYEEEKKVIVNGNTLVLTSKEYGILFLLLSHPQKVFSKANLFESI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN 203
           +   +   E+N +  HIS +R KL++
Sbjct: 183 WN-EEYFSEDNTLNVHISNIRNKLKS 207


>gi|213963214|ref|ZP_03391471.1| two-component system response regulator [Capnocytophaga sputigena
           Capno]
 gi|213954076|gb|EEB65401.1| two-component system response regulator [Capnocytophaga sputigena
           Capno]
          Length = 223

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 10/154 (6%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++L+  + ++ +  V +I   D  S++  +   + G DD + KP H  E+LARV +
Sbjct: 57  GSGMQLLDELKAMKKNHSVLIISAKD--SVEDKVLGLEKGADDYLAKPFHLAELLARVKS 114

Query: 115 IYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           I RR    N + E       +R+F + R  +V  E   L R+E  +L Y M    K V K
Sbjct: 115 IIRR---KNQQGEEVITLKNVRLFPETRTVKVGEETLSLNRKEYDLLYYFMIRPDKLVEK 171

Query: 171 TQIFSAIYGLFDEAVEE-NVVESHISKLRKKLRN 203
             +  A++G + + V+  + + S I  LRKKL+ 
Sbjct: 172 MTLAEAVWGDYIDQVDSLDFIYSQIKNLRKKLKT 205


>gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51]
 gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +++R  +++P+I ++        +  FD G DD V KP   RE+ ARV A+ RRL+    
Sbjct: 64  KVLRKETKIPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVLRRLEGEPT 123

Query: 125 RAE--TGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    T P   +    R+  V   V  L  +E  +L  L  N  +   + Q+ + ++  +
Sbjct: 124 KEHLITYPGFTINQITREVVVDETVVKLTAKEFDLLLVLAKNPSRIFTRDQLLNTVWE-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
           D   +   V++HI++LR KL +++G  D + + R +GY  +W+
Sbjct: 183 DYCGDSRTVDTHINRLRSKLESQVGLSDFIQTVRGVGYKFEWS 225


>gi|312867634|ref|ZP_07727840.1| putative response regulator ArlR [Streptococcus parasanguinis
           F0405]
 gi|311096697|gb|EFQ54935.1| putative response regulator ArlR [Streptococcus parasanguinis
           F0405]
          Length = 226

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  KV+ N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKVNENTLNYGNL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V        V  +   L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 KVNLSTNSTYVDDKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+     + + + R +GY
Sbjct: 192 VYVSKIRKKLKGTDFVESLQTLRSVGY 218


>gi|224477348|ref|YP_002634954.1| hypothetical protein Sca_1863 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421955|emb|CAL28769.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 224

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 102/197 (51%), Gaps = 7/197 (3%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF ++ +   E+ L+   ++ V      ++  G    EL + I+ +  +P+I ++   +
Sbjct: 24  EGFKTVTYSNAEDALKYLDKQHVDIAIIDIMMNGMDGFELCQEIKDNYTLPVIMLTARDA 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEV 142
           L    + + +G DD V KP   +E++ R+ A+ RR ++ + N  E G +++     +   
Sbjct: 84  LSDKEEAYLTGTDDYVTKPFEVQELIFRIKAVLRRYQINAENELEIGNLKLNQSYLEIST 143

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             +   LP +E  +L  L+++  +  ++ +    ++G FD   ++  V+ HI +LR +L 
Sbjct: 144 ANKTMTLPNKEFHLLFLLVSHPKQIFSREECIERVWG-FDYDGDDRTVDVHIRRLRNRL- 201

Query: 203 NKLGFD-PVDSKRFLGY 218
           NK+G +  +++ R LGY
Sbjct: 202 NKIGSNISIETVRGLGY 218


>gi|90419331|ref|ZP_01227241.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1]
 gi|90336268|gb|EAS50009.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1]
          Length = 221

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 28/212 (13%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------GKGEKVLELPRIIRAHSQVPLI 76
           G+ + GF S   +    + A   V   +A ++      G G  +L   R  +     P++
Sbjct: 19  GLGMSGFTSDLTDCCRDAEAALAVGGFDAVVLDVMLPDGSGHDILAAMR--QRGDTTPVL 76

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAET 128
            ++   +L   +   D G DD + KP    E+ AR+ A+ RR        L+    R + 
Sbjct: 77  LLTALDALPDRIRGLDGGADDHLGKPFALDEVAARLRALIRRGTTRAEPFLEWEGVRVDP 136

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             +    DG D         L RRE  +L  L+ + G  ++++Q+   +YG FDE VE N
Sbjct: 137 AAMVATQDGVD-------IRLSRREFAVLHALIQHPGAILSRSQLEDKLYG-FDEGVESN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            VE H+ KLR K  ++     +++ R +GY +
Sbjct: 189 AVEVHVHKLRAKFGSRF----IETLRGVGYRL 216


>gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 233

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 3/135 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFP 148
            ++G DD ++KP    E+LARV A+ RR + ++ +       V  D     V   G    
Sbjct: 95  LNTGADDYMSKPFSMPELLARVKALLRRAQPTSAKGTLSYSDVVMDLGAHRVTRGGRYIH 154

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L   E R+L++LM N G   ++ ++ +A++G  D  VE   V+ HI +LRK L  +   D
Sbjct: 155 LGPTEFRLLQFLMQNPGAVFSREELLNAVWG-PDIYVEPRTVDVHIRRLRKALNGEASTD 213

Query: 209 PVDSKRFLGYSIDWN 223
            + + R  GY++D N
Sbjct: 214 LIRTVRAAGYALDTN 228


>gi|209547341|ref|YP_002279259.1| two component winged helix family transcriptional regulator
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209538585|gb|ACI58519.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 222

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 10/160 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ ++ +++P+I ++   SL   +   DSG DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LKRLRQSGNKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRR---G 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +RA +    G +R     R   V  E+  L  RE  +LE L+   G  V+K  +  +++
Sbjct: 120 QDRASSEITVGNLRFSGGTRQFFVADELLQLTPREYAVLEQLVMKVGNTVSKAALSESVF 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G FD+  + + +E ++ +LRKKL +      + + R LGY
Sbjct: 180 G-FDDEADPSAIEIYVHRLRKKLESS--SVQIATLRGLGY 216


>gi|167762544|ref|ZP_02434671.1| hypothetical protein BACSTE_00900 [Bacteroides stercoris ATCC
           43183]
 gi|167699650|gb|EDS16229.1| hypothetical protein BACSTE_00900 [Bacteroides stercoris ATCC
           43183]
          Length = 225

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 4/150 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +L   + +R    V +I   D  SL   +D  + G DD + KP H  E+ AR+ +
Sbjct: 57  GSGLDLLRELKHLRRTDSVLIISAKD--SLDDKVDGLELGADDYLTKPFHLAELNARIKS 114

Query: 115 IYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR +   + + T G + ++ D R  EV G    L R+E  +L Y + N  + + K  +
Sbjct: 115 LIRRRQAQGDMSVTVGNLLLYPDKRQAEVGGAPLQLNRKEFDLLYYFVVNANRVINKMSL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLR 202
             +++G   D+A   + + S +  LRKKL+
Sbjct: 175 AESVWGDNIDQADSLDFIYSQVKNLRKKLK 204


>gi|71907213|ref|YP_284800.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71846834|gb|AAZ46330.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 223

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 21/209 (10%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV----LELPRIIRAH---------SQV 73
           +G   L +   +  SA E     EAF +G+   +    + LP+    H         +++
Sbjct: 18  QGLQQLGYTVDVARSAEE----AEAFAVGEDFDITLVDIGLPKADGLHFIRQLRTRGNRL 73

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132
           P + ++   S+  T+   D+G DD + KP    E+ AR+ A+ RR   V +       IR
Sbjct: 74  PALILTARDSMDDTIKGLDAGADDYMTKPYRLPEVAARIRALIRRSNAVVDACLHHDGIR 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           + +      + GE   L  RE  ILE L+      V+K ++   + G +D+ +  N +E 
Sbjct: 134 MDTRSHTATLNGEPLDLTNREWAILEMLLMASPAVVSKDKLVQGLAG-WDKDITPNAIEV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           H+S+LR+KL    G   + + R +GY +D
Sbjct: 193 HVSRLRQKLTT--GTIVIRTVRGIGYRVD 219


>gi|116662230|ref|YP_829285.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116612982|gb|ABK05704.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 227

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 18/217 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRI 66
           R LV +G++     DGVS  G        W  +    DV  ++  L +  G  VL+  R 
Sbjct: 18  RGLVNEGFVVDVTHDGVS--GL-------WAATENPYDVILLDLMLPLKNGYDVLKELRE 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
               + V ++   D    QT  D FD G DD + KP     ++AR+ A+ RR        
Sbjct: 69  RLVWTPVLMLTAKDGEYDQT--DAFDLGADDYLTKPFSFIVLVARIRALIRRGAPERPVT 126

Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            T G + +    R       V  L  RE  +L YLM + G+ V+K QI   ++   D A 
Sbjct: 127 LTVGSLTLDPGSRSVRRGDTVIELTAREYGLLHYLMRSHGQVVSKAQILDNVW---DPAF 183

Query: 186 E--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E  +NVVE +I  LR+K+    G   + + R +GY +
Sbjct: 184 EGGDNVVEVYIGYLRRKIDVPFGLQTLATVRGMGYML 220


>gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 219

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR     P+I I+        +   D G DD + KP    E+ AR+ AI RR +
Sbjct: 61  LEICRRIRQQYTTPIIIITAKSETMDKVTGLDYGADDYIVKPFEIEELFARIRAILRR-Q 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  +   I +  +  +  V G    L + E  +L  L  NR   + + QI   ++G 
Sbjct: 120 PQKDVIDINGIIIDKNAFEVTVDGTQLDLTKTEYDLLYVLAENRNHVLQREQILDHVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 179 YDSEVETNVVDVYIRYLRNKLKPFNKERTIETVRGVGYVI 218


>gi|323489407|ref|ZP_08094636.1| YxdJ [Planococcus donghaensis MPA1U2]
 gi|323396901|gb|EGA89718.1| YxdJ [Planococcus donghaensis MPA1U2]
          Length = 234

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 9/163 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R +R  +  P+I IS        +   ++G DD + KP H+  +LA++ +  RR      
Sbjct: 67  RQLRQQTTCPIIFISARSGEMDQVFALENGGDDFITKPFHYEIVLAKIRSHLRRAYGEYA 126

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K        G I ++ +  +  ++ EV PL ++E  ILE L+ +  K V++ Q+   ++
Sbjct: 127 PKQEERSVRAGRIVLYMERMELHIKKEVIPLQKKECTILELLLTHYPKVVSREQLLEELW 186

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D+A V+EN +  +++++RKKL +      +++ R  GY +
Sbjct: 187 D--DQAFVDENTLNVNMTRVRKKLSDYGVLSAIETVRGAGYRL 227


>gi|293603268|ref|ZP_06685698.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818329|gb|EFF77380.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 223

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A  + P++ ++    ++  +D  D G DD + KP   RE+ AR+ A+ RR    +++   
Sbjct: 69  AGLEAPVLVMTARAEIEDKIDMLDLGADDYLVKPFDLRELEARLRALMRRPAGQTSSTTS 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +   GR   + G    L RRE R+LE L+   G+ VAK ++ + ++ L D ++  
Sbjct: 129 YGNLSLDLAGRSVTLAGAPVELGRREFRLLEILVGRIGQTVAKERLMNQLFDLDDGSL-- 186

Query: 188 NVVESHISKLRKKL 201
           N +E  IS+LRKKL
Sbjct: 187 NALELLISRLRKKL 200


>gi|157377007|ref|YP_001475607.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319381|gb|ABV38479.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 224

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 9/150 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
            P+I ++        ++ F++G DD + KP H +E+LAR+ A+ +R   K S    E   
Sbjct: 73  TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLARIHALIQRAHGKASLPSKELSF 132

Query: 131 IRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             V  D     V     +F L   E R+L+  + +  K ++K+Q+   +Y  FD+  E N
Sbjct: 133 SGVTLDENQQSVMVGSNLFELTAMEFRLLKIFLMSPQKLLSKSQLTDKLYQ-FDDEKESN 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VVE +++ LRK    KLG   ++++R  GY
Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|187918761|ref|YP_001887792.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717199|gb|ACD18422.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 225

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +     P++ ++   S+   ++   +G DD + KP   RE++AR+    RR   S
Sbjct: 63  LRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQSPS 122

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    G +    D R   ++G    +  RER +LE L+   GK V K  +  AI+ L 
Sbjct: 123 KASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFTLA 182

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE   E+ VE +IS+LRKKL
Sbjct: 183 DEP-SEDAVEIYISRLRKKL 201


>gi|109947684|ref|YP_664912.1| two-component system regulatory protein [Helicobacter acinonychis
           str. Sheeba]
 gi|109714905|emb|CAJ99913.1| two-component system regulatory protein [Helicobacter acinonychis
           str. Sheeba]
          Length = 223

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 23/208 (11%)

Query: 19  FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78
             D G   +   S+E  E+L      D+   +  ++     +  + R+   H  + ++  
Sbjct: 20  LNDKGFMADVTESVEDGEYLM-----DIRNYDLVMVSDKNAINLVSRVKDKHPSIIVLVS 74

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSD- 136
           S  P+ Q  +  F+ G DD + KP  +R I A VA I  RL+   +N  E G + +  D 
Sbjct: 75  SSNPTSQEEVHAFEQGADDYIAKP--YRSIKALVARIEARLRFWGSNVIEIGDLTISPDE 132

Query: 137 ------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
                 GR+ EV+G+ F        +L +L  +R + V+K Q+  AI+    E V  NV+
Sbjct: 133 EKIIYKGREIEVKGKPF-------EVLTHLARHRDQIVSKEQLLDAIWE-EPEMVTPNVI 184

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E  I+++R+K+   LG   V++ R  GY
Sbjct: 185 EVAINQIRQKMDKPLGISTVETIRRRGY 212


>gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911]
 gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911]
          Length = 237

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----------GPIRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR +++  + E           G +++F +  +    
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTQLTAGQQEQAEEDSDSIRIGGLKIFPEHYEAFFS 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202
            E+  L  +E  +L YL  N+G+ + + Q+ SA++  +D A +  +V+ H+S LR+K+  
Sbjct: 156 EELLELTPKEFELLLYLAQNKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHVSHLREKIEE 214

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 215 NTKKPAYIKTIRGLGYKLE 233


>gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 255

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 7/164 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R   QVP++ ++   S++  +    +G DD V KP    E++AR+  + RR   +
Sbjct: 89  LGRLRREIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGAA 148

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G +R+  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 149 QAARGGSVLTVGDLRLDEDSHEVVRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDRV 208

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+KL    G  P + ++R  GY I
Sbjct: 209 WS-YDFGGQANVVELYISYLRRKLEGGTGLPPMIHTRRGAGYLI 251


>gi|156740840|ref|YP_001430969.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232168|gb|ABU56951.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 226

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 29/177 (16%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R IR  S VP+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DVCRQIRRTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRNS 120

Query: 119 ------LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                  ++S+      P+    +F+DGR  E+     PL   E R+L YLM N G+ + 
Sbjct: 121 DMLNPSARLSHGDITLDPVEHKVLFADGRIVELT----PL---EFRLLYYLMKNSGRVLN 173

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
            +QI + ++G +D   E N+V  +I    ++LR K+  DP     V + R LGY  +
Sbjct: 174 TSQILNKVWG-YDCEGESNLVAVYI----RRLRTKIERDPEHPRHVLTVRNLGYKFE 225


>gi|160880986|ref|YP_001559954.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160429652|gb|ABX43215.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 224

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 79/144 (54%), Gaps = 2/144 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++ + IR +S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR ++
Sbjct: 65  QVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRSIQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E G I +     + ++      L  +E  +L Y + NRG  +++ +I + ++  
Sbjct: 125 TLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNNVWN- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D   +   +++H+ KLR K+ +K
Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGDK 207


>gi|329767923|ref|ZP_08259435.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
 gi|328838586|gb|EGF88189.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
          Length = 221

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           + R+  + +  P+I ++   +L+  +   DSG DD + KP    E+LAR+  + RR   +
Sbjct: 63  IARLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNYGL 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + N  +   + +    +     G+   L  +E  +LEYLM N+   +++ QI + ++  +
Sbjct: 123 ATNVIQVDDVVLDISKKQVLRNGQNIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D     N+V+  I  +RKKL N      + +KR LGY
Sbjct: 182 DYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGY 218


>gi|319935317|ref|ZP_08009755.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1]
 gi|319809725|gb|EFW06126.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1]
          Length = 228

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 86/161 (53%), Gaps = 1/161 (0%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL   IR  SQ+P++ ++   + +  +   +SG DD + KP   +E+ AR+ A+ RR +
Sbjct: 61  IELCEYIRKQSQLPILFLTANDNEEMLVKGLNSGGDDYMTKPFRIKELYARLQALLRRSQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              ++   G +++    R+  ++ +   L   +  IL+ LM ++ + + ++Q+  AI   
Sbjct: 121 SLQDKMIVGNLQIDLQRREVFIEKQEVHLSTIDFDILKMLMIHKNQVLTRSQLLEAI-DQ 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  VE+N +  H+ +LR KL    G   +++ R +GY ++
Sbjct: 180 ENNFVEDNTLSVHVKRLRDKLGIYHGHSYIETVRGIGYRLN 220


>gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 223

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 59  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 119 PEEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 206


>gi|157267313|gb|ABV26370.1| RppA [Proteus mirabilis]
          Length = 221

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL  + ++  ++P+I ++    +   +   DSG DD + KP    E+++RV A+ RR+  
Sbjct: 62  ELIALRKSGEKIPIIILTARTQIDNLVQTLDSGADDFLPKPFAMPELISRVKAVSRRMAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+     G +++        + GE+  L  +E ++L  LM N    V K+ +   ++GL
Sbjct: 122 FSSQIWSIGDLQLNPSNHQVTLNGELLLLSGKEYQLLYELMRNTDNVVRKSDLEQRLFGL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            D+ +E N +E H+  LR+    K+G + + + R +GY
Sbjct: 182 -DDKIESNSLEVHMHNLRR----KIGKERIITVRGIGY 214


>gi|322516470|ref|ZP_08069390.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322125016|gb|EFX96425.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 217

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP++ ++ +      L  F    D  + KP     +  R+ AI+++L+
Sbjct: 60  LEVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGYLEKPFSLSLLRVRIEAIFKKLQ 119

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  R  T G +RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++ 
Sbjct: 120 PS--RVFTYGDVRVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215


>gi|312862894|ref|ZP_07723134.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           vestibularis F0396]
 gi|311101754|gb|EFQ59957.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           vestibularis F0396]
          Length = 219

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L+    IR     P++ I+        +     G DD + KP   +E+ ARVAA  RR  
Sbjct: 60  LQFCHEIRNQVDCPILFITAKTQEADIVQGLTYGADDYICKPFGVKELQARVAAHLRREH 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +++   G  +     ++  V+ ++  L + E  I ++L  N+G+  +K QI++ +YG
Sbjct: 120 RERHHKLSLGDFQFDLSAQELYVENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D+     V E HI  +R KL++ +G +P+++   +GY   W+
Sbjct: 180 YEDKGSPTAVAE-HIKNIRAKLKD-VGQNPIETVWGIGYK--WH 219


>gi|330821031|ref|YP_004349893.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
 gi|327373026|gb|AEA64381.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
          Length = 219

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 7/167 (4%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+    L R++RA    +P++ I+   ++   +   D G DD + KP    E+LAR  A+
Sbjct: 56  GKSGSALLRMLRARGDTIPVLVITARGTVADRVRGLDEGADDYLAKPFDLSEVLARCRAL 115

Query: 116 YRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR +     A   G I +    R          L  RE  IL  L+  RG   ++ ++ 
Sbjct: 116 VRRSQGRTRDAFVRGDIAIDLTSRVITRNASRIALTAREWAILIQLVGQRGVPQSRARLE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A+YG + + VE N +E H+S LRK    KLG D + + R +GY ++
Sbjct: 176 DALYG-WQDGVESNAIEVHVSNLRK----KLGADFIRTVRGIGYVVE 217


>gi|319934759|ref|ZP_08009204.1| hypothetical protein HMPREF9488_00035 [Coprobacillus sp. 29_1]
 gi|319810136|gb|EFW06498.1| hypothetical protein HMPREF9488_00035 [Coprobacillus sp. 29_1]
          Length = 226

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQ P++ +S     +  L  F  G DD ++KP     + A+  AI +R + 
Sbjct: 62  EVCYQIRQSSQCPIVFMSALSEEENQLKAFQYGGDDYISKPFLPSVLYAKCLAICKRQQ- 120

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N ++ET   G + +        ++ E   L  +E  +LEYL  N  + +++ QI  A++
Sbjct: 121 -NTQSETKNFGKLNIDYLNHQVWLENEELSLTHKEYLLLEYLTKNAYQLLSREQILDALW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF 207
           G +D   +   V+++I K+RKKL    G+
Sbjct: 180 G-YDYYGDARAVDTYIKKVRKKLGKYQGY 207


>gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 235

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 27/209 (12%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+G+  +   DG  +LE F            A  D+  +   L+  G    E+ + +R
Sbjct: 21  LRKEGFEPIIAHDGPTALEKF------------AANDIDIVLLDLMLPGMSGTEVCKQLR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   S   A+T
Sbjct: 69  TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHDSGAGADT 128

Query: 129 -------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G +++  +     V GE   +P +E  +LEYL+ N G+ + + Q+  
Sbjct: 129 EAEEEVTEQLLEGGRVKMDVERHTVTVAGEPVSMPLKEFDLLEYLLRNAGRVLTRGQLID 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204
            I+G  D   +   ++ H+ +LR K+  +
Sbjct: 189 RIWG-ADYVGDTKTLDVHVKRLRSKIEEQ 216


>gi|218291334|ref|ZP_03495294.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258512228|ref|YP_003185662.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218238780|gb|EED05994.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257478954|gb|ACV59273.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 231

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 77/144 (53%), Gaps = 4/144 (2%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +R A  Q P++ ++   +++  +   D+G DD + KP  ++E+LARV A+ RR 
Sbjct: 60  LDILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRT 119

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  E GP R+  + R     GE   L  +E ++LE  M N  K ++K  I   +
Sbjct: 120 GQIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G  D  V  N VE+++  LRKK+
Sbjct: 180 WG-PDADVIGNAVENYVHFLRKKI 202


>gi|254423150|ref|ZP_05036868.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190639|gb|EDX85603.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 236

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 24/223 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L + G++  + D G        + +E+ +Q+    DV  ++  + GK + +  L  + +
Sbjct: 19  GLKEQGFVVEYCDHG-------DIAYEKAIQNEY--DVILLDIMMPGK-DGLFILKNLRQ 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
                P+I ++    L   L   + G DD + KP    E++AR+ A+ RR      N   
Sbjct: 69  VGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSAGEQPNLVT 128

Query: 128 TGPIRVFSDGRDPEVQGE------------VFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            GP ++    R    Q E            V  L  RE  +LEYLM + G+   +TQ+  
Sbjct: 129 VGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRVFTRTQMLE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++G +D     NVV+  I +LRKK+  K     ++S R +GY
Sbjct: 189 HVWG-YDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGY 230


>gi|197285555|ref|YP_002151427.1| swarming motility regulation two-component system, response
           regulator [Proteus mirabilis HI4320]
 gi|227356052|ref|ZP_03840443.1| swarming motility regulation two-component system, response
           regulator [Proteus mirabilis ATCC 29906]
 gi|194683042|emb|CAR43534.1| swarming motility regulation two-component system, response
           regulator [Proteus mirabilis HI4320]
 gi|227163829|gb|EEI48737.1| swarming motility regulation two-component system, response
           regulator [Proteus mirabilis ATCC 29906]
          Length = 221

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL  + ++  ++P+I ++    +   +   DSG DD + KP    E+++RV A+ RR+  
Sbjct: 62  ELIALRKSGEKIPIIILTARTQIDNLVQTLDSGADDFLPKPFAMPELISRVKAVSRRMAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+     G +++        + GE+  L  +E ++L  LM N    V K+ +   ++GL
Sbjct: 122 FSSQIWSIGDLQLNPSNHQVTLNGELLLLSGKEYQLLYELMRNTDNVVRKSDLEQRLFGL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            D+ +E N +E H+  LR+    K+G + + + R +GY
Sbjct: 182 -DDKIESNSLEVHMHNLRR----KIGKERIITVRGIGY 214


>gi|170783570|ref|YP_001740087.1| CheY-like response regulator [Arthrobacter sp. Chr15]
 gi|150035078|gb|ABR67074.1| CheY-like response regulator [Arthrobacter sp. Chr15]
          Length = 247

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 5/162 (3%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R    +VP++ ++   ++   +   DSG DD + KP H  E+LAR+ A+ RR  
Sbjct: 77  ELCRRLRERGIEVPVLMLTARDAVDDRVRGLDSGADDYLAKPFHLEELLARLRALTRRGP 136

Query: 121 VSNNRA-ETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + + R    G +R+ S+G R    + EV  L  +E  +LE+ M   G+ + +  +    +
Sbjct: 137 LVSARGLVAGNLRLDSEGMRCWRGEAEV-NLTAKEHALLEFFMEQPGRVLTREVLLENCW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            L  EA   NVV+ H+  LR+K+  + G   +++ R +GY +
Sbjct: 196 DLAFEA-NSNVVDVHVRALREKIDRRFGVRSIETVRGVGYRL 236


>gi|296159315|ref|ZP_06842141.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295890574|gb|EFG70366.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 219

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 6/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R+  +   VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR +  
Sbjct: 63  LKRLRDSGKDVPVLVLTARSTVLDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQGR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S  +     + V    +  EV     PL  RE  IL  L+ N+G   +++++  ++YG +
Sbjct: 123 SVEQIRYLDLTVNPAAQTVEVGTRRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E +E N +E H+S LRKKL  KL    + + R +GY ++
Sbjct: 182 QEEIESNAIEVHVSNLRKKLGAKL----IKTVRNIGYVME 217


>gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
 gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S +P+I ++        +   D+G DD + KP    E+LAR+    +R K
Sbjct: 66  MEVCRRIRQISDIPIIMLTAKDETTDIVMGLDTGADDYITKPFAIEELLARIRVALKRKK 125

Query: 121 VSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    + T  I+      D  +     ++  L + E  +L++ M N+   + + QI + +
Sbjct: 126 LEIEHSNTISIKGLELDLDKHIVSYNQQIIDLTKTEFDLLKFFMENKNIALNRDQILNKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G FD   + NVV+ ++  LR K+ NK     + + R +GY
Sbjct: 186 WG-FDYLGDTNVVDVYVRYLRTKIDNKYNERFIYTIRGVGY 225


>gi|329897279|ref|ZP_08272017.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC3088]
 gi|328921275|gb|EGG28671.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC3088]
          Length = 233

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 3/154 (1%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++L   +  +   ++P+I ++   S    +   D G DD + KP   RE++AR+ A
Sbjct: 60  GSGIELLRRLKRDKLTEEIPVIMLTAKTSEDNVIQGLDVGADDYITKPFAPRELIARIRA 119

Query: 115 IYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + RR     S+ R E G + +        + GE   +   E ++L + M++  +   ++Q
Sbjct: 120 LLRRSGAMPSSERIEAGELVLDMSSHRVFLAGEPLAMGPTEFKLLSFFMSHPERAYTRSQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +   ++G  +  VEE  V+ HI +LRK L+N +G
Sbjct: 180 LLDQVWG-GNVYVEERTVDVHIRRLRKALQNDMG 212


>gi|329769101|ref|ZP_08260522.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325]
 gi|328839447|gb|EGF89024.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325]
          Length = 225

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 2/175 (1%)

Query: 48  AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107
           AI   ++ K + V  + ++       P++ ++    ++  +   DSG DD + KP   +E
Sbjct: 48  AILDVMMPKMDGVTVVQKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVIKE 107

Query: 108 ILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           +LARV ++ RR    ++N  E G + +     +   + +   L  +E +++E LM N G 
Sbjct: 108 LLARVRSMTRRQTTFTSNVLELGNVSLSKYTFELSTEKDKVRLSNKEYQMMEMLMRNPGN 167

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   Q    I+G +D   E NVV  +IS LRKKL+       + + R +GY+++
Sbjct: 168 VIQTEQFLERIWG-YDSDSEINVVWVNISYLRKKLKALDANVQIKATRNVGYTLE 221


>gi|326201109|ref|ZP_08190981.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988677|gb|EGD49501.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 226

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 8/163 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR +S+VP+I ++   +    L  F  G D+ + KP     +LARV A+ +RL +
Sbjct: 66  EALRSIRQYSKVPVIMLTAKCTEADELLSFGIGADEYITKPFSLMILLARVQALLKRLNI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI--Y 178
           + N +     + +        V G+   L  +E  +L YL  N G  +++ +I +++  Y
Sbjct: 126 NINGKKSFDGLEIDLPAHTVHVSGQEIELTPKEFELLLYLCDNDGIALSREKILNSVWDY 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G F +      V++HI KLR KL  K  F  + + R LGY  +
Sbjct: 186 GYFGDV---RTVDTHIKKLRLKLGEKGDF--IQTIRGLGYKFE 223


>gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 225

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S  P+I ++   ++Q  ++  DSG DD + KP    E+LARV A  RR+ 
Sbjct: 64  LEVARRIRKTSNTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRAHLRRV- 122

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              N A TG +RV       DGR+    G    L  +E  +LE L  N GK  ++ +I  
Sbjct: 123 ---NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NVV+ +I  LR+KL        + + R +GY +
Sbjct: 180 KVWPEYTGG--SNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222


>gi|291460016|ref|ZP_06599406.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291417357|gb|EFE91076.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 226

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   + L R +R     +P++ ++    L   ++  ++G D  + KP   RE++A V A+
Sbjct: 56  GMNGIALARQLRKERCGMPILMLTARSELLDRVEGLNAGADYYLTKPFDERELMACVNAL 115

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            RR     N+   G   +  D            L  RE  ++  LM  +GK + K QI S
Sbjct: 116 LRRQGAEVNQLSFGNTSLDLDSGTLLCGERELRLSAREFDVMRLLMQAKGKNLRKEQILS 175

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            ++G FD    EN VE ++  LRKKL++ +G D  + S R LGY ++
Sbjct: 176 RVWG-FDSEATENHVEVYVGFLRKKLKS-IGSDLSIVSVRRLGYHLE 220


>gi|312863869|ref|ZP_07724107.1| putative sensory transduction protein RegX3 [Streptococcus
           vestibularis F0396]
 gi|311101405|gb|EFQ59610.1| putative sensory transduction protein RegX3 [Streptococcus
           vestibularis F0396]
          Length = 217

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP++ ++ +      L  F    D  + KP     +  R+ AI+++L+
Sbjct: 60  LEVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGYLEKPFSLSLLRVRIEAIFKKLQ 119

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  R  T G +RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++ 
Sbjct: 120 PS--RVFTYGDVRVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215


>gi|294498881|ref|YP_003562581.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348818|gb|ADE69147.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 224

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I+ +  +P++ ++        L  FD G DD V KP   +E++ARV A+ RR +V
Sbjct: 62  ELTKEIKEYFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYRV 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +NN    G I++     +         LP +E  +L  L+++ GK   + Q+   I+G 
Sbjct: 122 EANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGY 218
           +D   +E  V+ HI +LR++L +   +G + + + R LGY
Sbjct: 181 YDYEGDERTVDVHIKRLRERLNHMKNVGME-IKTIRGLGY 219


>gi|288957923|ref|YP_003448264.1| two-component response regulator [Azospirillum sp. B510]
 gi|288910231|dbj|BAI71720.1| two-component response regulator [Azospirillum sp. B510]
          Length = 226

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 8/188 (4%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95
           +L  +   DV  ++  L G+    L L +++RA     P++ +S   S+   +    +G 
Sbjct: 38  FLAGAEHYDVMIVDRMLPGRDG--LSLVQVLRAAGNDTPVLFLSALGSVDDRVKGLKAGG 95

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           DD + KP    E+LAR+  + RR   +    R   G + +    R  +  G+   L  RE
Sbjct: 96  DDYLTKPFAFSELLARIEVLVRRRGAAQPQTRLAVGDLELDLLSRSVKRCGKAIDLLPRE 155

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
             +LEYLM N G  V +T +   ++   FD   + NV++ HI++LR+K+        + +
Sbjct: 156 FSLLEYLMRNAGSVVTRTMMLENVWDYHFDP--QTNVIDVHIARLRQKIDKDFPTPLIHT 213

Query: 213 KRFLGYSI 220
            R  GYS+
Sbjct: 214 VRGAGYSL 221


>gi|304405183|ref|ZP_07386843.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346062|gb|EFM11896.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 9/202 (4%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +LE    EE  +   +EDV+     ++   +  L L   IR    +P++ ++    
Sbjct: 25  EGFRALEAADGEEASRVMRQEDVALAIVDVMMPEKDGLMLCEEIRRDYDIPVMLLTARGE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEV 142
           L      F SG DD + KP    E+L RV A+ RR + VS+ + + G   V     +  V
Sbjct: 85  LDDKARGFRSGTDDYMVKPFEPDELLYRVRALLRRYRIVSSEKLQLGGTTVDRHSYEVNV 144

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            GE  PLP +E  +L  L +  G+   + Q+   I+G  D   ++  ++ HI +LR++  
Sbjct: 145 HGENVPLPLKEFELLAQLASQPGRIFTREQLLRPIWGA-DYEGDDRTIDVHIKRLRERFA 203

Query: 203 N---KLGFDPVDSKRFLGYSID 221
                 GF  + + R LGY ++
Sbjct: 204 PFGLSAGF-AITTVRGLGYKLE 224


>gi|295700312|ref|YP_003608205.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439525|gb|ADG18694.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 225

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +     P++ ++   S+   ++   +G DD + KP   RE++AR+    RR   S
Sbjct: 63  LRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQSPS 122

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    G +    D R   ++G    +  RER +LE L+   GK V K  +  AI+ L 
Sbjct: 123 KASEVVCGDLSFDIDTRQFTLKGAPLNVTPRERSVLEALILRLGKTVTKPALVDAIFTLA 182

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE   E+ VE +IS+LRKKL
Sbjct: 183 DEP-SEDAVEIYISRLRKKL 201


>gi|256789898|ref|ZP_05528329.1| response regulator [Streptomyces lividans TK24]
          Length = 229

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R+IR  S+VP++  +        +   ++G DD + KP    ++ AR+AA+ RR  
Sbjct: 61  LDVLRMIRGISRVPVLVATARDDETEIIRLLNAGADDYMVKPFSGGQLAARLAAVLRRSA 120

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  RA   P+      R+    R   + G   PL RRE  +L YL A+  + +++ +I 
Sbjct: 121 PAGLRAARPPVLRVADLRIDPTARTAHLAGRELPLTRREFDLLAYLAAHADQVMSRQRIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           + ++      VE+  V+ H+S LR+K+  K
Sbjct: 181 AEVWQ--QPYVEDQTVDVHLSALRRKMGEK 208


>gi|209523452|ref|ZP_03272007.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209496194|gb|EDZ96494.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 628

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 111/227 (48%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSA-IEAFLIGKGEK 59
            +L++D   + D  +A+       ++  N   +  E++QSS+ + V   IE  L+     
Sbjct: 3   ILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDG--- 59

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + L   +R+H+ QVP++ ++   + Q  +   D+G DD + KP+   E+ AR+ A+ RR
Sbjct: 60  -ISLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRR 118

Query: 119 LKVSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + +   T    V  +   D    G+   L  +E  +LE LM NR +  +  +I   +
Sbjct: 119 SSEATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223
           +  FD+    N V +HI  LR+KL+    G + +++   LGY ++ N
Sbjct: 179 WT-FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224


>gi|169825763|ref|YP_001695921.1| transcriptional regulatory protein SrrA [Lysinibacillus sphaericus
           C3-41]
 gi|168990251|gb|ACA37791.1| Transcriptional regulatory protein srrA (Staphylococcal respiratory
           response protein A) [Lysinibacillus sphaericus C3-41]
          Length = 216

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    VP+I ++        +   + G DD + KP    E+LAR+ A+ RR KV N   
Sbjct: 54  IRKFWHVPIIMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVLRRTKVENKVV 113

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               +R+  +  +   Q E  PL  +E  ++   +  + K  ++  + + ++G +  ++E
Sbjct: 114 VFEGLRLDKESFELYFQQEAIPLTPKEFSMMSLFLDYQNKVFSREHLINTVWG-YHVSIE 172

Query: 187 ENVVESHISKLRKKLRNKLGFDPVD 211
           +  ++SH+  LR+KLR K GF P D
Sbjct: 173 DRTIDSHVRNLREKLR-KSGF-PAD 195


>gi|325263338|ref|ZP_08130073.1| DNA-binding response regulator YycF [Clostridium sp. D5]
 gi|324031731|gb|EGB93011.1| DNA-binding response regulator YycF [Clostridium sp. D5]
          Length = 221

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 1/141 (0%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L + ++    +P I ++     +  L  FD G DD V KP   + +L R+ A+++R  
Sbjct: 59  LRLYQELQKTRNIPAIFLTAKDEERDMLAAFDMGADDYVVKPFSMKVLLKRIEAVFKR-S 117

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       I ++   +   ++G+   L  +E ++LEYL+ N+G+ + K  I   I+GL
Sbjct: 118 SEDQTLSCREITLYPLRKQVFLKGQEITLTAKEYQLLEYLLRNQGQVLTKENILEQIWGL 177

Query: 181 FDEAVEENVVESHISKLRKKL 201
             + V +N V   I++LRKK+
Sbjct: 178 DGQFVVDNTVSVTINRLRKKI 198


>gi|323340668|ref|ZP_08080920.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091791|gb|EFZ34411.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 228

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 27/224 (12%)

Query: 18  LFGDDGVSLEGFNSLEFE-------------EWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           L  +D  +L  F SLE +             E L ++  ED  AI   L+      LE+ 
Sbjct: 5   LIIEDEDNLSNFVSLELQHEGYETKVCENGREGLDTALNEDWDAILLDLMLPELNGLEVC 64

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R     P+I ++   S+   +   D G DD V KP    E+LAR+ A+ RR+   N+
Sbjct: 65  RRLRQSKSTPIIMMTARDSVIDRVSGLDHGADDYVVKPFAIEELLARLRAVLRRVDFEND 124

Query: 125 RAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              T    V    RD  ++          E+  L +RE  +L  LM N    +A+  +  
Sbjct: 125 NGTTKQTTVTY--RDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDVLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            ++G ++  +E NVV+ +I  LR K+ ++ G D  + + R  GY
Sbjct: 183 KVWG-YESQIETNVVDVYIRYLRNKI-DRPGEDSYIQTVRGTGY 224


>gi|92113906|ref|YP_573834.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91796996|gb|ABE59135.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 220

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG       +  +++ F   E    ++++  E  SA+   L       +
Sbjct: 3   ILLVEDDPLLGDGIKTALVREAYTVDWFT--EGHHAIEAAHNETFSAMILDLGLPDMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  + +P++ ++   +++  +   D+G DD V KP   +E+LAR+  + RR + 
Sbjct: 61  TVLKRLRESTALPILILTARDAVEERISGLDAGADDYVLKPFDLKELLARLRVVTRRAEG 120

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +R+ T G + +          G    L RRE  +L  L  +  K +++ ++ S +YG 
Sbjct: 121 RASRSLTLGALSIDEASHSVSWHGRDVALGRREYALLLELARHPDKVLSRPRLESLLYG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E V  N VE H+  LRKKL   L    + + R +GY +D
Sbjct: 180 WGEEVASNAVEVHVHHLRKKLDKSL----IMTVRGIGYRLD 216


>gi|8100674|gb|AAF72358.1|AF192329_19 VanRB [Enterococcus faecalis]
          Length = 220

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL   +    + + R +GY ++
Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPENI----IKTIRGVGYRLE 217


>gi|107026097|ref|YP_623608.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116692719|ref|YP_838252.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105895471|gb|ABF78635.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116650719|gb|ABK11359.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
          Length = 248

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 13/150 (8%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   +    +G DD + KP    E+ AR+  + RR + +    +T   
Sbjct: 96  RTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSQAAPATFDTTLV 155

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            GP+++    R     GE   L   E R+LEY+M N G+ + +T +F A++G  FD    
Sbjct: 156 VGPLKLDLISRKAFRDGEEIVLLPTEYRVLEYMMRNAGQTITRTMLFEAVWGYHFDPGT- 214

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            N++E H+ +LR+K+      DP D+K+ +
Sbjct: 215 -NLIEVHMGRLRRKI------DPSDAKQMI 237


>gi|237798700|ref|ZP_04587161.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806133|ref|ZP_04592837.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021553|gb|EGI01610.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027246|gb|EGI07301.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 223

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 76/137 (55%), Gaps = 3/137 (2%)

Query: 67  IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +RA S+ +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  +   R
Sbjct: 66  LRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGER 125

Query: 126 AETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            +   + V+  D R   +  E+  L  RE+ +LE L+A  G+ ++K Q+ + ++GL DE 
Sbjct: 126 QQRCGVLVYDLDTRRFTLSDELLTLTSREQAVLEALIARPGRVMSKEQVAAQVFGL-DEE 184

Query: 185 VEENVVESHISKLRKKL 201
              + +E +I +LRKKL
Sbjct: 185 ASPDAIEIYIHRLRKKL 201


>gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 226

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 17/217 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L ++G+  +  +DG S         EE+ ++ A  D+  ++  L G     +E+ R +R 
Sbjct: 21  LEREGHEVVVREDGRS-------GLEEFTRNPA--DLVLLDVMLPGMSG--VEVCRELRR 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNR 125
            S VP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR        ++ 
Sbjct: 70  ESSVPIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLRRRIAPPAQEDHI 129

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G + + +D     V+GE   +P +E  +LE LM N G+ + + Q+   ++G  D   
Sbjct: 130 VRVGDVELDADSHVVVVRGEPVSMPLKEFELLEMLMRNHGRVLTRAQLIDRVWG-ADYVG 188

Query: 186 EENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   ++ HI ++R K+  N      + + R LGY  +
Sbjct: 189 DTKTLDVHIKRVRGKVEENPSSPRMITTIRGLGYKFE 225


>gi|91779593|ref|YP_554801.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692253|gb|ABE35451.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 225

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +     P++ ++   S+   ++   +G DD + KP   RE++AR+    RR   S
Sbjct: 63  LRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQSPS 122

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    G +    D R   ++G    +  RER +LE L+   GK V K  +  AI+ L 
Sbjct: 123 KASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFTLA 182

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE   E+ VE +IS+LRKKL
Sbjct: 183 DEP-SEDAVEIYISRLRKKL 201


>gi|90407882|ref|ZP_01216057.1| transcriptional regulator [Psychromonas sp. CNPT3]
 gi|90310973|gb|EAS39083.1| transcriptional regulator [Psychromonas sp. CNPT3]
          Length = 228

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 7/167 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +L+  R +   ++V ++     P+    +D   SG DD + KP    E+ AR+ +I 
Sbjct: 59  GISLLKTLRKMGKQAKVIVVSAKSLPA--DKIDALLSGADDYMTKPFSFDELHARIVSIA 116

Query: 117 RRLKVSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR  ++N   +    +   D   +    Q ++  L + E  I+E L     + +   QI 
Sbjct: 117 RRGNITNKNNKISISQYTLDLFTKTLTYQSQLINLTKNEFLIIECLFLAPNRVINIEQIS 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            A+ G F E++ +N +E+H+S +RKK+R +LG +P + +KR  GY +
Sbjct: 177 EAVAGSF-ESLSKNCIEAHLSTIRKKIR-QLGAEPLIQNKRGFGYYV 221


>gi|325679875|ref|ZP_08159444.1| putative heme response regulator HssR [Ruminococcus albus 8]
 gi|324108313|gb|EGC02560.1| putative heme response regulator HssR [Ruminococcus albus 8]
          Length = 224

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 106/213 (49%), Gaps = 16/213 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL ++GY     +DGV  E  + LE         + ++  I + ++       EL R +R
Sbjct: 20  ALKQNGYQPFTANDGV--EALDMLE---------KTNIDLIISDIMMPNMDGYELTRQLR 68

Query: 69  -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
            A  Q+P+I ++   S +   + F +G DD + KPI   E++ RV A+ +R K+++    
Sbjct: 69  NADFQIPIIMVTAKESFEDKKEGFGAGADDYMVKPIDINEMILRVGALLKRSKLASEHTM 128

Query: 128 T-GPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           T G   +  D +   + G     +P+ E ++L  L++   K   + Q+   ++G+ D+ V
Sbjct: 129 TVGSCVLDYDAQTVSIDGGAGETIPQMEFKLLFKLLSYPNKIFTRRQLLDELWGM-DKDV 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +E  V+ HI +LR++  +   F  V + R LGY
Sbjct: 188 DERTVDVHIKRLRERYGSTDDFSIV-TVRGLGY 219


>gi|289773780|ref|ZP_06533158.1| response regulator [Streptomyces lividans TK24]
 gi|289703979|gb|EFD71408.1| response regulator [Streptomyces lividans TK24]
          Length = 238

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R+IR  S+VP++  +        +   ++G DD + KP    ++ AR+AA+ RR  
Sbjct: 70  LDVLRMIRGISRVPVLVATARDDETEIIRLLNAGADDYMVKPFSGGQLAARLAAVLRRSA 129

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  RA   P+      R+    R   + G   PL RRE  +L YL A+  + +++ +I 
Sbjct: 130 PAGLRAARPPVLRVADLRIDPTARTAHLAGRELPLTRREFDLLAYLAAHADQVMSRQRIL 189

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           + ++      VE+  V+ H+S LR+K+  K
Sbjct: 190 AEVWQ--QPYVEDQTVDVHLSALRRKMGEK 217


>gi|260587254|ref|ZP_05853167.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
 gi|331083571|ref|ZP_08332682.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542449|gb|EEX23018.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
 gi|330403782|gb|EGG83334.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 224

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 22/231 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58
           M   ++D   +++  +   G  G   +GF +  EF++ L+    E +  ++  L G+ G 
Sbjct: 1   MIYCVEDERNIRELLVYTLGTTGFEAKGFGDGKEFKKALKEELPELI-LLDIMLPGEDGY 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +LE  +   + S++P+I ++   +    +   + G DD + KP    E LARV A+ RR
Sbjct: 60  TLLEELKKEPSTSEIPVIMVTAKEAEYDKVRGLEGGADDYITKPFGMMEFLARVKAVLRR 119

Query: 119 LKVSNNRAE----TGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            K  +++ E    T  +     +VF + R  E       L  +E  +L YL+ N+G  ++
Sbjct: 120 SKKHSSKKEYHYKTLTVNVERHQVFDNDRAVE-------LTLKEFELLRYLVENKGIVLS 172

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +I   I+G ++ A E   V+ HI  LR+KL +  GF  +++ R +GY I
Sbjct: 173 RDEILEKIWG-YECAGETRTVDVHIRTLRQKLGDS-GF-LIETVRGVGYRI 220


>gi|218680464|ref|ZP_03528361.1| putative two-component response regulator protein [Rhizobium etli
           CIAT 894]
          Length = 189

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 12/158 (7%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A  Q+P++ ++   ++   +   D+G DD + KP ++ E++AR+ A+ RR  V+     T
Sbjct: 33  AKQQIPVLVLTARGAVDERIAGLDAGADDYLIKPFNNGELIARIRALMRRSPVT-----T 87

Query: 129 GPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            P   F+D       R     G    L   E+ +LE LM N GK V+K ++  A     D
Sbjct: 88  MPTLEFADVRFEMASRQVTCNGTEMALAPSEKSLLELLMRNGGKVVSKRKMEHAFSEFGD 147

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E    N VE  +S+LR+KL        +++ R +GY +
Sbjct: 148 ER-SSNAVELAVSRLRRKLEGHPADAVIETVRGVGYML 184


>gi|50085995|ref|YP_047505.1| regulator of kdp operon (transcriptional effector) [Acinetobacter
           sp. ADP1]
 gi|49531971|emb|CAG69683.1| regulator of kdp operon (transcriptional effector) [Acinetobacter
           sp. ADP1]
          Length = 237

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 20/154 (12%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ+P+I +S  P  Q  +   D+G +D V KP   +E+ AR+  ++R+   
Sbjct: 69  EVLKEMRQWSQIPVIVLSARPDEQQKIKLLDAGANDYVTKPFSIQELCARIRVMFRQ--- 125

Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +++    VF+DG+          ++ G+   L ++E ++L  L+ ++GK V + QI
Sbjct: 126 --QPSQSEHNLVFNDGQLFVDVAEHSVKLAGDDVVLTKKEFQLLALLIRHQGKIVTQKQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISK-LRKKLRNKLG 206
            S ++G+  E       ++H  + L KKLR KLG
Sbjct: 184 LSELWGITHEE------DTHYLRILVKKLRTKLG 211


>gi|21219087|ref|NP_624866.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|6137054|emb|CAB59609.1| putative response regulator [Streptomyces coelicolor A3(2)]
          Length = 238

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R+IR  S+VP++  +        +   ++G DD + KP    ++ AR+AA+ RR  
Sbjct: 70  LDVLRMIRGISRVPVLVATARDDETEIIRLLNAGADDYMVKPFSGGQLAARLAAVLRRSA 129

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  RA   P+      R+    R   + G   PL RRE  +L YL A+  + +++ +I 
Sbjct: 130 PAGLRAARPPVLRVADLRIDPTARTAHLAGRELPLTRREFDLLAYLAAHADQVMSRQRIL 189

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           + ++      VE+  V+ H+S LR+K+  K
Sbjct: 190 AEVWQ--QPYVEDQTVDVHLSALRRKMGEK 217


>gi|304440638|ref|ZP_07400522.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370825|gb|EFM24447.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 216

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 9/203 (4%)

Query: 23  GVSLEGFNSLEFE---EWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGI 78
            +S +GF    FE   ++ ++    D+  ++  L G  G+++L+  R  R      +I +
Sbjct: 19  ALSTQGFEVSTFEKGPDFFKTEILPDIILLDIMLPGMSGQEILKKIRENRKFDNTLVIML 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138
           +   +    +   ++G DD + KP    E+++RV A  RR+       E   I + +  R
Sbjct: 79  TAKSAEMDVVSCLEAGADDYIKKPFGVMELISRVKAHIRRIGREAEEIEVRDIMIDTKRR 138

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
             +  GE   L  +E  +L+YL  N+   + +  I   I+G FD   E   V+ HI+ LR
Sbjct: 139 TVKKDGEEINLTYKEFELLKYLAENKSIVLTRENIIEKIWG-FDYIGETRTVDMHIASLR 197

Query: 199 KKLRNKLGFDPVDSKRFLGYSID 221
           +    K+G D + + R +GY ++
Sbjct: 198 Q----KIGEDYIATIRGVGYKME 216


>gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 226

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 5/149 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G  D   +   ++ H+ +LR K+    G
Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209


>gi|254519135|ref|ZP_05131191.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912884|gb|EEH98085.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 223

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 88/165 (53%), Gaps = 12/165 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    L   + G DD + KP +   ++ARV+AI +R   S
Sbjct: 63  ICREVRKKSDVPIIVVTSRDSQVDELMSINLGADDFITKPYNTETLIARVSAILKR---S 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++ T  +  + D +     G +        L + E +IL YL+ N+GK V++  +   
Sbjct: 120 YGKSSTDEVIYYGDLKLNLANGSISYKSNTIELTKNELKILTYLIKNKGKIVSRDALMDT 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           ++   D  +++N +  ++++LRKK+  ++G  + ++++R LGY I
Sbjct: 180 LWQ-SDLFLDDNTLSVNVTRLRKKIE-EIGLKNIIETRRGLGYII 222


>gi|42781806|ref|NP_979053.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
 gi|42737730|gb|AAS41661.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
          Length = 221

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ ++IR+ S +P+I ++     +  +  FD G+DD + KP     ++ RV A+ RR  
Sbjct: 63  FEVAKMIRSQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 122

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++
Sbjct: 123 DNNVNNHLIFKEVRIDVDAYRVYVDDVEIFLTTKEFEILQLLFQNERKVLTRENIVEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   E  ++++HI  LRK    KL    + + + +GY +D
Sbjct: 183 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKVD 220


>gi|329902991|ref|ZP_08273335.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548543|gb|EGF33207.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 228

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA +S +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRKLRARNSHLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 120 VGGGPTVVRHGPLSYDQVGRIAYINEQMLDLSARELGLLEVLLQRTGRLVSKEQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKK+  +LG   + + R LGY ++
Sbjct: 180 E-WGEEVSNNAIEVYVHRLRKKI--ELGGVRIATVRGLGYCLE 219


>gi|325264701|ref|ZP_08131430.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029993|gb|EGB91279.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 232

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 27/206 (13%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           R L++DGY         +++ F+  E +  L+  A  D+  ++  L G  GE   EL   
Sbjct: 21  RILMQDGY--------DTIQAFSGTEAKLLLRLEA-PDLILLDLMLPGMSGE---ELIVT 68

Query: 67  IRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +R      +P++ +S    L+T +    +G DD + KP   +E+LARV A  RR K+   
Sbjct: 69  VREEMGLDLPILVLSAKAGLETKVAALKNGADDYLTKPFEPQEVLARVYAALRRYKIEAG 128

Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + E          + +  D R  E+ G+  PL   E  IL  L+ +  K  ++  ++  +
Sbjct: 129 KTEKETAFYTYKKLNLHPDSRKAEISGQELPLTMHEYDILYLLIKDPEKVYSRENLYEQV 188

Query: 178 Y--GLFDEAVEENVVESHISKLRKKL 201
           +  G +    E+N V  H+S LR+KL
Sbjct: 189 WKGGYYG---EDNTVNVHVSNLRRKL 211


>gi|291280200|ref|YP_003497035.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
 gi|290754902|dbj|BAI81279.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
          Length = 233

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 9/142 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVS- 122
           IR  S+ P+I I+   S+   +  F+ G DD + KP    E+LAR+ AI RR   +K S 
Sbjct: 68  IREMSETPIIIITAKESVSNKVLCFEYGCDDYIIKPFEKMELLARIKAILRRSNKIKSSN 127

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            NN   T P  +  +    +  GE   L  +E  IL YL+ N GK + + QI   ++G  
Sbjct: 128 DNNIIITPPFEINLEEGYCKKDGEKIDLTAKELEILSYLVKNAGKNLKRDQIIKHVWG-- 185

Query: 182 DEAVEE--NVVESHISKLRKKL 201
           D+++ +    ++ HI  +R+K+
Sbjct: 186 DDSLYKWSRSLDVHIQHIRQKI 207


>gi|266620348|ref|ZP_06113283.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
 gi|288868060|gb|EFD00359.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
          Length = 229

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 7/167 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + IR  S   P+I  +    L   +D  D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LSLLQAIRQKSIMTPVIITTALDGLGDRIDGLDAGADDYLVKPFAVEELLARIRAVTRRP 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + + A      +  D    E+     + E   L  RE  +LEYLM N G+ + +  I 
Sbjct: 120 GRTADTASLAVGNLSLDAVKHELTRNGAESETVTLSGRESSLLEYLMRNAGRTLPRNAIL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++G  D  VE   ++++I  LR++L++  G   + +   +GY ++
Sbjct: 180 SYVWG-PDSEVEAGNLDNYIYFLRRRLKSLHGNAKIQTVHGVGYRLE 225


>gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 224

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 9/158 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IRA  Q P+I I+   S+   +   D+G DD + KP    E+LAR+ A++RR+ 
Sbjct: 62  MEVCRRIRAVKQTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVH 121

Query: 121 V-SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  R  T   + V  D R  +   +   L +RE  +L   + N    + +  +   ++
Sbjct: 122 APAEERLLTFKDLTVDLDARTVKKGNQFIELTKREYDLLVTFLQNTNIVLTRDTLLDKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           G FD  VE NVV+ ++  LR KL      D  D +R++
Sbjct: 182 G-FDTEVETNVVDVYVRYLRHKL------DETDKERYI 212


>gi|170738031|ref|YP_001779291.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820219|gb|ACA94801.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 248

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 13/129 (10%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFP 148
           +G DD + KP    E+ AR+  + RR + +    +T    GP+++    R     GE   
Sbjct: 117 AGGDDYLTKPFDPEEMAARLEVLLRRSQAAPATFDTTLVVGPLKLDLISRKAFRDGEEIV 176

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207
           L   E R+LEY+M N G+ + +T +F A++G  FD     N++E H+ +LR+K+      
Sbjct: 177 LLPTEYRVLEYMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIEVHMGRLRRKI------ 228

Query: 208 DPVDSKRFL 216
           DP D+K+ +
Sbjct: 229 DPSDAKQMI 237


>gi|317057519|ref|YP_004105986.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449788|gb|ADU23352.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 107/215 (49%), Gaps = 20/215 (9%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL ++GY      DG+  E  + LE         + ++  I + ++       EL R +R
Sbjct: 20  ALKQNGYQPFTASDGI--EALDMLE---------KTNIDLIISDIMMPNMDGYELTRQLR 68

Query: 69  -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
            A+ Q+P+I ++   S +     FD+G DD + KPI   E++ RV A+ +R K+++    
Sbjct: 69  NANFQMPIIMVTAKESFEDKKIGFDAGTDDYMVKPIDINEMILRVGALLKRSKLASEHTM 128

Query: 128 T-GPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           T G   +  D +       QGE   +P+ E ++L  L++   K   + Q+   ++G+ D+
Sbjct: 129 TVGNCVLDYDAQTVAFDGQQGET--IPQMEFKLLFKLLSYPNKIFTRRQLLDELWGM-DK 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            V+E  V+ HI +LR++  +   F  V + R LGY
Sbjct: 186 DVDERTVDVHIKRLRERYGSAEAFSIV-TVRGLGY 219


>gi|190892280|ref|YP_001978822.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190697559|gb|ACE91644.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 223

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE +  +P + R      +I ++   + +  ++  D G DD + KP    E++AR+ A+ 
Sbjct: 57  GEGLRFIPELRRTGKDTSIIVLTALNAPKERVEGLDLGADDYLGKPFLVEELMARLRAVL 116

Query: 117 RR------LKVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR      LK++  R    P+ V  + G  P        LPRRE  +L  L   + K V 
Sbjct: 117 RRPPSLSELKITAGRMVIDPLHVSVTVGDTP------LDLPRRELLVLAALARRKEKTVL 170

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ + +A+Y  ++E ++ N +++HIS+LRK+L +      + + R +GY
Sbjct: 171 RSTLEAAVYN-YEEEIQSNALDAHISRLRKRLADAGAEVSIHNIRGVGY 218


>gi|296162732|ref|ZP_06845517.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295887048|gb|EFG66881.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 296

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D   +      +   +  +L+     +  + L  +   DV  ++  L    G+ V
Sbjct: 74  LLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADQLLRTNHYDVILLDLNLPKLSGKNV 133

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R+ +     P++ ++   S+   ++   +G DD + KP   RE++AR+    RR  
Sbjct: 134 LR--RLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 191

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  +    G +    D R   ++G    +  RER +LE L+   GK V K  +  AI+ 
Sbjct: 192 PSKASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 251

Query: 180 LFDEAVEENVVESHISKLRKKL 201
           L DE   E+ VE +IS+LRKKL
Sbjct: 252 LADEP-SEDAVEIYISRLRKKL 272


>gi|228969996|ref|ZP_04130710.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228789723|gb|EEM37591.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 231

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 3/143 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           E+ +IIR  S VP+I ++     Q  +  F+ G+DD + KP  +R +++R+ A+ +R   
Sbjct: 64  EVAKIIRKQSPVPIIMLTALIDEQNQIRGFNLGIDDYITKPFSYRILISRIQAVLKRSNT 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  N      I +  D     V      L + E  IL+ L+ N  K + + QI   I+G
Sbjct: 124 RIMENHLIFKEIHLICDIYKVLVDKNEVMLTKTEFEILQILIRNERKVLTRGQILQEIWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR 202
            ++   +  +V++HI  +R+KL+
Sbjct: 184 -YNYYGDTKLVDTHIKNIRRKLK 205


>gi|163814357|ref|ZP_02205746.1| hypothetical protein COPEUT_00508 [Coprococcus eutactus ATCC 27759]
 gi|158449992|gb|EDP26987.1| hypothetical protein COPEUT_00508 [Coprococcus eutactus ATCC 27759]
          Length = 223

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 70  AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 129

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP++E  +L  L A+ G+   K Q+   ++G   EA + 
Sbjct: 130 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 188

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++ ++   F+ V + R +GY +
Sbjct: 189 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 220


>gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 239

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 13/140 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-----------TGPIRVFSDGRDPEV 142
           G DD + KP   RE++ARV AI RR +   + AE            G ++VF +  +   
Sbjct: 96  GADDYMTKPFSPREVMARVKAILRRSQAVIDVAEHLRSEQKDYLQVGDLKVFPEQYEAYF 155

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
              +  L  +E  +L YL  NRG+ + + Q+ SA++  +D A +  +V+ HIS LR+K+ 
Sbjct: 156 AENLLELTPKEFELLMYLTENRGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLREKIE 214

Query: 203 -NKLGFDPVDSKRFLGYSID 221
            N      + + R LGY ++
Sbjct: 215 TNTKKPAYIKTIRGLGYKLE 234


>gi|291532410|emb|CBL05523.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Megamonas hypermegale
           ART12/1]
          Length = 173

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +RA ++Q  ++ ++   SL+  +D  DSG DD + KP    E+LAR+ A+ RR+
Sbjct: 8   IEVCRYLRAKNNQTAILMLTARDSLEDKIDGLDSGADDYLAKPFEFPELLARIRALSRRI 67

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  N+  E   +++         +     L  RE +++E L+ N  + + + QI   I
Sbjct: 68  NKTFYNDIIEYNNLKLNCCNAILTYKQIEVSLSPRENQLMELLIRNTHQILPREQIIDKI 127

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G +D  +  N ++  I  LR+KL      D + + R +GY
Sbjct: 128 WG-YDTNINSNTLDVTIKSLRQKLTKLSLSDCIHTIRGIGY 167


>gi|217388361|ref|YP_002333390.1| regulatory protein VanR [Enterococcus faecalis]
 gi|227517498|ref|ZP_03947547.1| response regulator [Enterococcus faecalis TX0104]
 gi|260559887|ref|ZP_05832066.1| regulatory protein vanRB [Enterococcus faecium C68]
 gi|11345398|gb|AAG34686.1|AF310956_1 response regulator [Enterococcus faecium]
 gi|55709826|gb|AAV58811.1| vanRB [Clostridium sp. CCRI-9842]
 gi|61743147|gb|AAX55325.1| VanRB [Clostridium hathewayi]
 gi|61743150|gb|AAX55327.1| VanRB [Clostridium hathewayi]
 gi|61743153|gb|AAX55329.1| VanRB [Clostridium hathewayi]
 gi|80973253|gb|ABB53358.1| VanRB [Clostridium sp. MLG245]
 gi|80973264|gb|ABB53368.1| VanRB [Enterococcus faecium]
 gi|216409903|dbj|BAH02338.1| vanR [Enterococcus faecalis]
 gi|227075103|gb|EEI13066.1| response regulator [Enterococcus faecalis TX0104]
 gi|229463102|gb|ACQ66100.1| response regulator [Enterococcus faecium]
 gi|260074111|gb|EEW62434.1| regulatory protein vanRB [Enterococcus faecium C68]
          Length = 219

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL   +    + + R +GY ++
Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPENI----IKTIRGVGYRLE 217


>gi|332531744|ref|ZP_08407629.1| copper-sensing two-component system response regulator CpxR
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038720|gb|EGI75162.1| copper-sensing two-component system response regulator CpxR
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 229

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 16/136 (11%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGP-----IRVFSDGRDPEVQGEV 146
           G DD + KP +HRE+LARV AI RR++  N  N A T       I V    R+  + G  
Sbjct: 93  GADDYIPKPFNHRELLARVKAITRRIEHINSLNVATTSKLLVNGITVNLAAREASIDGST 152

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKLR 202
             L   E  IL  L  N G+ V+K QI   + G     FD +     ++ H+S +RKK+ 
Sbjct: 153 LTLTGTEYEILTLLCKNAGEVVSKEQISEEVLGRRLASFDRS-----IDMHVSNIRKKIA 207

Query: 203 NKLGFDPVDSKRFLGY 218
             +  + + + R  GY
Sbjct: 208 EHIPGERIKTMRGTGY 223


>gi|317473954|ref|ZP_07933233.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316909796|gb|EFV31471.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 245

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 18/173 (10%)

Query: 45  DVSAIEAFLIG------KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           D+SA    L+        G K+  + +  +  ++VP+I I+   +   T+  F+ G DD 
Sbjct: 43  DISAYNLLLLDVMMGEISGFKMASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDY 102

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPR 151
           ++KP   RE+ ARV A+ RR        E  P ++  +        +   + GE  PL +
Sbjct: 103 ISKPFSLREVAARVKAVLRR--TQQGEGERAPEQIVYESLVLDIIKKKVSIDGEEAPLTK 160

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKLRN 203
           +E  IL  L+ N+G+  ++  I   I+   DE  V +  ++ +I++LRKK RN
Sbjct: 161 KEFEILLLLLQNKGRVFSREDILGRIWS--DEVYVLDRTIDVNITRLRKKNRN 211


>gi|326792334|ref|YP_004310155.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543098|gb|ADZ84957.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 6/145 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR    VP+I +S    + T +D    G DD + KP    E+ ARVA   RR   
Sbjct: 62  EILKEIRTWGDVPVIILSAKDMVGTKIDLLKLGADDYITKPFDLGEVAARVAVQLRRAHK 121

Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               AE    +   V  + +   V G+   L  +E  +LE L+ N  K  +K  I+ A++
Sbjct: 122 QMKEAEVLSYKDLIVEKEDKRVTVNGQEVELTAKEYSMLELLLNNPNKVFSKANIYEAVW 181

Query: 179 GLFDEAV-EENVVESHISKLRKKLR 202
              +E + ++N V++H+S LR KL+
Sbjct: 182 N--EEYLGDDNAVKTHMSNLRSKLK 204


>gi|293416465|ref|ZP_06659104.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185]
 gi|291431821|gb|EFF04804.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185]
          Length = 219

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQCEPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|262371880|ref|ZP_06065159.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311905|gb|EEY92990.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 225

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 12/167 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +++ R IR  S +P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  MQVLRQIRQRSALPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARINALLRRGH 120

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                LK  +   + G + +  +      +G+   L  RE  IL  L+++  K  +K  +
Sbjct: 121 AETAQLKSQSQLLKNGDLVLDVEQHLATFKGQQIELSNREWAILIPLVSHPNKIFSKANL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +Y  FD  V  N +E ++  LR     KLG D + + R LGY +
Sbjct: 181 EDKLYD-FDSEVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 222


>gi|283795568|ref|ZP_06344721.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291077236|gb|EFE14600.1| regulatory protein VanR [Clostridium sp. M62/1]
          Length = 237

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 19/194 (9%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRAHSQVPLIGISD 80
           +S EG+  +E E  LQ++   D S I+ +++      E   E  + IRA  Q PL+ ++ 
Sbjct: 26  LSAEGYEVVEAENGLQAAELADES-IDMYILDVNMPEETGFEAAKKIRARFQAPLLFLTA 84

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN----NRAET----GPIR 132
           Y      ++ F  G DD + KP  + E++ RV A++RR +        R ET    G I 
Sbjct: 85  YSGEADKVNGFLIGADDYIVKPFSNMEMIMRVRAVFRRAEQGTPPAAAREETAEKKGMIP 144

Query: 133 VFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           +     D E Q       V  L   E RILE +  +R K  +   I+ +++G  ++AV +
Sbjct: 145 IGDLLLDTESQSLIKNQAVISLTYTEYRILELMAKHRKKIYSLDNIYQSVWG--EDAVGD 202

Query: 188 NVVESHISKLRKKL 201
             +  HI  +RKK+
Sbjct: 203 GAIMVHIKNIRKKM 216


>gi|206563997|ref|YP_002234760.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198040037|emb|CAR56018.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR      RA+
Sbjct: 68  RRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVSRR---HAGRAQ 124

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           T    GP+R+        + G+  PL  +E  +L  LM   G  +++ Q    +Y  + E
Sbjct: 125 TTLAIGPLRLDPVKHLVWLDGDEVPLSPKEFVLLHELMREPGAVISREQFEERLYS-WGE 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 184 EIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216


>gi|182434197|ref|YP_001821916.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326774709|ref|ZP_08233974.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178462713|dbj|BAG17233.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326655042|gb|EGE39888.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 263

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 16/187 (8%)

Query: 41  SAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           S R D+  ++  + G  G +V+   R +   S +P++ +S   ++   +     G DD V
Sbjct: 68  SERPDLMVLDLMMPGLDGWRVMARARDM---SDLPVLVVSALDAVGYRVRALRGGADDFV 124

Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRER 154
            KP H  E++ARV A+ RR   + +R   G      +R+  + R     G    L   E 
Sbjct: 125 VKPFHGEELVARVEALLRR---AGHRQWAGERVGEHLRLVPERRAVVWYGGEVRLSDIEY 181

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL---GFDPVD 211
           R+L+ L+ NRG+ V   Q+ + ++G  + AV+   V+  + +LR+KLR      G DPV+
Sbjct: 182 RLLQLLVRNRGRVVTTKQLLTRVWG-DESAVDGERVKFGVLRLRRKLRGAAGPGGRDPVE 240

Query: 212 SKRFLGY 218
           + R LGY
Sbjct: 241 AVRGLGY 247


>gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
          Length = 232

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +RA+    P+I ++    +   +   D G DD + KP    E+LAR+  I  R 
Sbjct: 61  IEICRRLRANKITTPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKILSRQ 120

Query: 120 KVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            V +   E       G I +  +      + E   L ++E  +LEYLM N+   + + QI
Sbjct: 121 VVISETKEREAVIKAGKITLDKNTYTAHFEDEEISLTKKEFELLEYLMINKNIVLTREQI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            S ++G +D   E NV + +I  LR K+  K     + + R +GY 
Sbjct: 181 VSNVWG-YDYESETNVTDVYIRYLRSKIDQKYDTHYIRTVRGIGYQ 225


>gi|52841523|ref|YP_095322.1| DNA-binding response regulator [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628634|gb|AAU27375.1| DNA-binding response regulator [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 225

 Score = 64.7 bits (156), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 14/158 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +  P+I ++   S++  +   DSG DD   KP    E+ AR+ A+ RR   S  RA++  
Sbjct: 71  NSTPVIILTARESIEDRVKGLDSGADDYHIKPFDLNELSARIRALVRR---SQGRADS-V 126

Query: 131 IRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           ++  +   DP      V   +  +PRRE  +L+ L+ N G+ +++ Q+  +IYG ++E V
Sbjct: 127 LQYKNITLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG-WEEDV 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + N +E HI  LRKKL        + + R +GY  + N
Sbjct: 186 DSNALEVHIHNLRKKLNANF----IRTIRGVGYMAEKN 219


>gi|330818567|ref|YP_004362272.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370960|gb|AEA62316.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 248

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 7/114 (6%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFP 148
           +G DD + KP    E+ AR+  + RR + +  ++ET    GP+ +   GR     G    
Sbjct: 117 AGGDDYLTKPFDPEEMAARLEVLLRRSRSAPAQSETSLTVGPLALDLIGRKASRDGVEIA 176

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201
           L   E R+LEY+M N G+ + +T +F A++G  FD     N+++ H+ +LRKK+
Sbjct: 177 LLPTEYRVLEYMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIDVHMGRLRKKI 228


>gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 233

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 21/203 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           +VK+GY  +      + +G  +LE  E    + R D+  ++  L       LE+ R IR 
Sbjct: 21  MVKEGYEVV-----TAFDGREALEMFE----AERPDILILDLML--PEMDGLEVARTIRK 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAE 127
            S VP+I +S   S    +   + G DD + KP  +RE+ ARV AI RR  L + N  AE
Sbjct: 70  TSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDLTIENQEAE 129

Query: 128 TGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             P       +++ +D    +  GE   L  RE  +L +L  + G+ + +  +   ++G 
Sbjct: 130 AEPKEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREHLLETVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
           +D   +   V+  I +LR+K+ +
Sbjct: 189 YDYFGDVRTVDVTIRRLREKIED 211


>gi|226304507|ref|YP_002764465.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183622|dbj|BAH31726.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 224

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 34/223 (15%)

Query: 8   RALVKDGYIA---LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           R LV +G++    L GDDG ++              S   DV  ++  L GK     ++ 
Sbjct: 18  RGLVAEGFVTAVELNGDDGFAI------------ACSDEFDVIVLDIMLPGK--HGYDIV 63

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----- 118
           R +RA     P++ +S         D FD G DD + KP      LAR+ A+ RR     
Sbjct: 64  RDLRARGVWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVFLARLRALVRRGAPQR 123

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              L V +   +    +V   G +         L  RE  +LE+LM N G  V KT+I  
Sbjct: 124 PSILTVGDLSLDPAKHQVIRAGIE-------LTLTPREYSVLEFLMRNNGVVVTKTEIVR 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +++    E  +EN+VE +I  LRKK+    G   +++ R +GY
Sbjct: 177 SVWDTNYEG-DENIVEVYIGYLRKKVDLPFGTHSIETIRGIGY 218


>gi|182419686|ref|ZP_02950927.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237665577|ref|ZP_04525565.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376423|gb|EDT74004.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237658524|gb|EEP56076.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 229

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 15/209 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V +       +DG+     ++ + EE L+   +E+V  +   L+       
Sbjct: 4   ILICDDNEAVHETIGTYLKNDGMIY--ISAFDGEEALEKFKKENVDLVILDLMMPKIFGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S+VP+I ++        +   + G DD + KP   RE++AR+  I+RR+  
Sbjct: 62  EVCKEIRKISEVPIIMLTAKGEEIDKIIGLEIGADDYIVKPFSPREVVARIKTIFRRV-- 119

Query: 122 SNNRAETGPIR-VFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N++++  P R +FS        D  +  + GE   +  +E  IL  +  N G+ +++ +
Sbjct: 120 -NSKSDLLPNRKIFSYENLNIDLDKYETVINGEKIDITPKECEILYLIATNEGRVLSREE 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I   ++G +D   +  VV++ I +LRKKL
Sbjct: 179 ILDKVWG-YDYFGDTRVVDTQIKRLRKKL 206


>gi|323351831|ref|ZP_08087482.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|322121888|gb|EFX93620.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|325689949|gb|EGD31953.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
          Length = 218

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  SQ+P++ ++      T L  F+  + D V KP     ++ R+  I RR  
Sbjct: 61  LEVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++  A  G + V  D      QGE  PL ++E  IL+ L   +G  V + Q+ + I+G 
Sbjct: 121 VASEIA-VGDLTVSIDDCTVYWQGEKMPLTKKEYEILQTLAKRKGHLVTRDQLMTTIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  ++  V+++HI  +RKK+       P+ +   +GY +
Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGV----PLKTITGMGYQL 213


>gi|315652037|ref|ZP_07905038.1| transcriptional regulator FeuP [Eubacterium saburreum DSM 3986]
 gi|315485684|gb|EFU76065.1| transcriptional regulator FeuP [Eubacterium saburreum DSM 3986]
          Length = 220

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 10/167 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL+  R   A S+V ++   D  +L   +   D G +D + KP H +E+ AR+ A++
Sbjct: 59  GLEVLKAIREDDADSKVIILSARD--TLNDKVLGLDLGANDYLVKPFHFKELEARIRALF 116

Query: 117 RRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R     N+   R ++  I +  + +  E  GEV  L  +E  I EYL  N+G+ V+  ++
Sbjct: 117 RTSYNKNDDCIRLDSQNIILCLNKKQVEKDGEVISLTPKEYAIFEYLCLNKGRLVSAGEL 176

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +       NV++ HI+ +R+    KLG D + + R +GY++
Sbjct: 177 LEHNIDMNGNDA-SNVIKVHIAAIRR----KLGSDAIKTNRGMGYTV 218


>gi|56962979|ref|YP_174706.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909218|dbj|BAD63745.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 220

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L   IR     P++ ++        ++ F SG DD ++KP   RE+ ARV A  RR  
Sbjct: 60  FDLCEKIRPIVDCPILFLTAKAEEAAVVEGFTSGGDDYISKPFSIRELSARVNAHLRR-- 117

Query: 121 VSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              NR +    RV S      D ++  +  +   L + E +I  +L  N+G+  ++ QI+
Sbjct: 118 --ENREKHHTKRVISGFVFDFDNKEVHINNQKLNLTKNEYKICAFLAQNKGRTFSRDQIY 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             IYGL   A+   + E  I  +RKK +     DP+ +   +GY
Sbjct: 176 DEIYGLDGNALHGTITE-FIRTIRKKCKEH-EVDPIKTVWGIGY 217


>gi|306845545|ref|ZP_07478114.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|306273866|gb|EFM55693.1| DNA-binding response regulator [Brucella sp. BO1]
          Length = 225

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 6/151 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETG 129
              P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR   + N   E G
Sbjct: 71  CSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYSGNPNPLIEIG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y  FD  VE N 
Sbjct: 131 GLQIDLAVKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLYS-FDTEVESNT 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E H+S+LRK    KLG   +++ R +GY +
Sbjct: 190 MEVHVSRLRK----KLGHAIIETVRGIGYRL 216


>gi|300714596|ref|YP_003739399.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299060432|emb|CAX57539.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 220

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+ DG  A     G S++ F   E +E L + +     A+   L   G   L
Sbjct: 3   ILVIEDDRLIGDGIKAGLIKMGFSVDWFT--EGKEGLAALSAAPYDAVVLDLSLPGMDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R   Q  P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILRQWRQQGQDEPVLILTARDALEQRVTGLQQGADDYLCKPFALSEVAARLQALIRRRH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + + S      + GE   L  RE  +LE  + N G+ + + Q+   +Y 
Sbjct: 121 GQLHPLLSHGAVVMESGSHRVTLNGEPLELKSRELALLELFLMNTGRVLTRAQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +DE V  N VE HI  LRKKL ++
Sbjct: 181 -WDEDVSSNAVEVHIHHLRKKLGSQ 204


>gi|229494312|ref|ZP_04388075.1| transcriptional activator protein CopR [Rhodococcus erythropolis
           SK121]
 gi|229318674|gb|EEN84532.1| transcriptional activator protein CopR [Rhodococcus erythropolis
           SK121]
          Length = 225

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 34/223 (15%)

Query: 8   RALVKDGYIA---LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           R LV +G++    L GDDG     F +   +E+       DV  ++  L GK     ++ 
Sbjct: 19  RGLVAEGFVTAVELNGDDG-----FATACSDEF-------DVIVLDIMLPGK--HGYDIV 64

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----- 118
           R +RA     P++ +S         D FD G DD + KP     +LAR+ A+ RR     
Sbjct: 65  RDLRAREIWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVLLARLRALVRRGAPQR 124

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              L V +   +    +V   G +         L  RE  +LE+LM N G  V KT+I  
Sbjct: 125 PAILSVGDLSLDPAKHQVSRAGIE-------LTLTPREYSVLEFLMRNNGVVVTKTEIVR 177

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +++    E  +EN+VE +I  LRKKL    G   +++ R +GY
Sbjct: 178 SVWDTNYEG-DENIVEVYIGYLRKKLDLPFGTQSIETVRGVGY 219


>gi|254453719|ref|ZP_05067156.1| response regulator protein [Octadecabacter antarcticus 238]
 gi|198268125|gb|EDY92395.1| response regulator protein [Octadecabacter antarcticus 238]
          Length = 200

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 6/170 (3%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G   L+  R     +  P+I ++    +   +   D G DD V KP  H E+ AR  A
Sbjct: 36  GDGRSFLKQHRA--GKNDTPVIILTARSEVSDRISLLDLGADDYVTKPFDHAELQARCRA 93

Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR    S    + G +     G    V+  V  L  RE R+LE LM  +G+   K ++
Sbjct: 94  VLRRKAGTSQTTIKVGDVEFDPVGGYLTVKENVINLRNRELRLLEILMNAKGQVFPKQKL 153

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              ++  +D+ V EN VE ++ +LR+ L        + + R LGY +D +
Sbjct: 154 VDRLFS-YDDDVSENAVEVYVGRLRRHLEGS--SVQITTLRGLGYRLDHD 200


>gi|167767696|ref|ZP_02439749.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1]
 gi|317499122|ref|ZP_07957400.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710713|gb|EDS21292.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1]
 gi|316893591|gb|EFV15795.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 226

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 7/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58
           M  +++D   +++         G    GF N  EF + L    + ++  ++  L G+ G 
Sbjct: 1   MIFVVEDDPNIRELVTYTLQSTGFDACGFENGSEFLKALSDGEKPELVLLDIMLPGEDGI 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +L   R   A   +P+I ++   +    +   DSG DD + KP    E+++RV A+ RR
Sbjct: 61  SILGKLRKKSATRDLPIIMMTAKGTEYDKVLGLDSGADDYITKPFGMMELVSRVKAVLRR 120

Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + E   G ++++ +    +  G    L  +E ++L  L+ ++G  + + Q+ + 
Sbjct: 121 SSRNEKKDEIIVGQLKIYPNKHKVKSCGNEVTLTNKEFKLLCLLVESKGNVLNRDQLLTN 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           I+G +D   E   V+ HI  LR+KL  + G   +++ R +GY I  N
Sbjct: 181 IWG-YDFDGETRTVDVHIRSLRQKL-GECG-KLIETVRGIGYRIGGN 224


>gi|152977169|ref|YP_001376686.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025921|gb|ABS23691.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 231

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 11/165 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +   + E   L ++E  + E L+A   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEMHFKAEQVLLTKKEAILAEMLLAKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY ++
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIQNGIETVRGLGYRLN 226


>gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
 gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 239

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  L   DG           EE L+ +  EDV      ++  G    EL R IRA
Sbjct: 23  LSKEGYEVLKAYDG-----------EEALKIANDEDVDMFIVDIMLPGIDGFELVRKIRA 71

Query: 70  ---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
              +   P+I +S        +   + G DD + KP   RE+LARV AI+RRL  +    
Sbjct: 72  IEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRLSTATQSK 131

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRVAKTQIFSAI 177
           E  P ++ +  +D E+  E + +  R +++         L +L  N GK  ++  +   +
Sbjct: 132 EERPKKIIA--KDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDVLLDKL 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +G +D   +   V+ HI +LR K+      DP + K
Sbjct: 190 WG-YDYYGDTRTVDVHIRRLRTKIEE----DPSNPK 220


>gi|118443679|ref|YP_877073.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134135|gb|ABK61179.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 232

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 22/176 (12%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           L R IR +  +P+I +S        +   D G DD + KP +  E+LARV A  RR    
Sbjct: 63  LVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNKS 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K      E G +R+  +      +     L   E +IL YL+ N+GK   K QIF
Sbjct: 123 MSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQIF 182

Query: 175 SAI-----YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
             +     YG      ++N +  HIS LR K+ +    +P  + + R LGY +D N
Sbjct: 183 EYVWEEPFYG------DDNAIMVHISNLRDKIEDD-SKNPHYIKTIRGLGYKLDSN 231


>gi|332361852|gb|EGJ39655.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 224

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 16/154 (10%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132

Query: 132 RV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            V         DG+D E+ G+ F L       L Y + N+   + KTQIF  ++G FD  
Sbjct: 133 TVNLSTNSTLKDGKDVELLGKEFDL-------LVYFLQNQNVILPKTQIFDRLWG-FDSD 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +VVE ++SK+RKKL+       + + R +GY
Sbjct: 185 TTVSVVEVYVSKIRKKLKGTAFAKNLHTLRSVGY 218


>gi|300905846|ref|ZP_07123579.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|301301944|ref|ZP_07208078.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300402315|gb|EFJ85853.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300842925|gb|EFK70685.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|315256926|gb|EFU36894.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
          Length = 219

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +  D R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPDKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|187780065|ref|ZP_02996538.1| hypothetical protein CLOSPO_03661 [Clostridium sporogenes ATCC
           15579]
 gi|187773690|gb|EDU37492.1| hypothetical protein CLOSPO_03661 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 76/138 (55%), Gaps = 4/138 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--N 124
           IR  S +P+I ++   S    ++  D G DD + KP   RE+++RV AI RR    +  N
Sbjct: 67  IRKTSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRTSKDSDFN 126

Query: 125 RAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             ++  I  + ++ +  + + E+F L + E ++L+Y M N  K ++K QI   ++ +  E
Sbjct: 127 IIQSKDIVFYINEMKVEKYEKEIF-LSKTELKLLQYFMKNYQKILSKEQILENLWDIDGE 185

Query: 184 AVEENVVESHISKLRKKL 201
            + EN V  +I ++R+K+
Sbjct: 186 FINENTVAVNIRRIREKI 203


>gi|94495066|ref|ZP_01301647.1| DNA-binding response regulator [Sphingomonas sp. SKA58]
 gi|94425332|gb|EAT10352.1| DNA-binding response regulator [Sphingomonas sp. SKA58]
          Length = 224

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 4/149 (2%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIR 132
           P++ ++   +++  +    SG DD + KP    E+ AR+ A+ RR K   ++    G I+
Sbjct: 74  PILMLTSLGAIEDRVKGLASGADDYLVKPFAIAELSARLDALSRRGKSGLSDTGACGTIK 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191
           +    R+   +G+   L  RE  +LE L+  + + V++  +   ++   FD   + N+VE
Sbjct: 134 IDRVRREAWREGQRIVLQPREFELLEQLIRQQDQVVSRAMLLEQVWHFHFDP--QTNIVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +H+S+LR+KL      DP+ + R +GY +
Sbjct: 192 THMSRLRQKLNAGFDCDPIQTVRGVGYKL 220


>gi|33336059|gb|AAQ12900.1| response regulator protein [Enterococcus faecium]
          Length = 220

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL   +    + + R +GY ++
Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPENI----IKTIRGVGYRLE 217


>gi|229061164|ref|ZP_04198514.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228718035|gb|EEL69675.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 225

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 119 LKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           L VS  N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 LGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G +D   ++  V++HI KLR KL +K
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209


>gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 233

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 19/140 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFP 148
           G DD + KP   RE++ARV AI RR       V  +  + G +++ +   +   QGE   
Sbjct: 96  GADDYLTKPFSPREVVARVKAILRRSAPQESAVEEDIIQIGDVKIVASNYEVFKQGERLE 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L  +E  +L YL  N+G+ + + Q+ SAI+  +D   +  +V+ HIS LR+K+      +
Sbjct: 156 LTPKEFELLAYLAKNKGRVLTRDQLLSAIWN-YDFVGDTRIVDVHISHLREKI------E 208

Query: 209 PVDSK-------RFLGYSID 221
           PV  K       R LGY ++
Sbjct: 209 PVTKKPTYIKTIRGLGYKME 228


>gi|158336595|ref|YP_001517769.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306836|gb|ABW28453.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 231

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 16/219 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L ++ YI  +  DG    G+        L+S   +   AI  +L+  G   ++L + +
Sbjct: 18  RTLTQEAYIVDWAKDGREAWGY--------LESQWTQYTLAIFDWLL-PGLSGIDLCQRL 68

Query: 68  RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           RA  S +P++ ++     + T    D+G DD + KP    E+LAR+ A+ RR       +
Sbjct: 69  RAQQSPLPVLMLTAKDQPEDTATGLDAGADDYLVKPFRKIELLARLRALQRRSPHFQPQQ 128

Query: 126 AETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + GP+ +     +  +    QG+   L  +E ++LEY M +  + V++ QI + ++G  
Sbjct: 129 LQVGPLTLDYGTHNVSILNQEQGQSVLLTHKEFQLLEYFMQHPRQIVSRDQILNQLWGAE 188

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + +  NVV + + +LR+KL      D +++   +GY +
Sbjct: 189 ADTI-SNVVAALMRQLRRKLAELGCDDAIETVYGVGYRL 226


>gi|148658560|ref|YP_001278765.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570670|gb|ABQ92815.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 226

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 29/177 (16%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R IR  S VP+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DVCRQIRRTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRNS 120

Query: 119 ------LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                  ++S       P+    +F+DGR  E+     PL   E R+L YLM N G+ + 
Sbjct: 121 DMLNPSARLSLGDLTLDPVEHKVLFADGRIVELT----PL---EFRLLYYLMKNAGRVLN 173

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
            +QI S ++G +D   E N+V  +I +LR K+      DP     V + R LGY  +
Sbjct: 174 TSQILSKVWG-YDYEGESNLVAVYIRRLRTKIER----DPEHPRHVLTVRNLGYKFE 225


>gi|89897063|ref|YP_520550.1| hypothetical protein DSY4317 [Desulfitobacterium hafniense Y51]
 gi|219667066|ref|YP_002457501.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89336511|dbj|BAE86106.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537326|gb|ACL19065.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 76/144 (52%), Gaps = 2/144 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           E+ R+++    V +I ++    ++  +     G DD + KP    E+LAR+ A I  +  
Sbjct: 67  EVCRMLKKSENVSIIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHARIRNQFP 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   GP R+    ++ + Q +V  L   E  +L++L+ N+G  ++KT I   ++G 
Sbjct: 127 TLLGEVVMGPFRLDDRRKEIQFQDKVLELSPTEYELLKFLILNQGLVLSKTMILDKVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D A ++N+VE +I  LR+KL +K
Sbjct: 186 YDFAGDDNIVEVYIRSLREKLGDK 209


>gi|226314802|ref|YP_002774698.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097752|dbj|BAH46194.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 87/164 (53%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL   IRA + Q P++ ++   ++   +   + G DD + KP    E+ AR+ A+ RR+
Sbjct: 60  LELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRI 119

Query: 120 KVSNNRAETGPIR-VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            VS ++ +T     +  D    EV  +G++  L ++E ++L++ + +  K + + QI + 
Sbjct: 120 PVSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNY 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++GL D  +  N V++ I  LRKK+        + + R +GY +
Sbjct: 180 VWGL-DATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRL 222


>gi|83591864|ref|YP_425616.1| two component transcriptional regulator / cell cycle
           transcriptional regulator CtrA [Rhodospirillum rubrum
           ATCC 11170]
 gi|83574778|gb|ABC21329.1| two component transcriptional regulator, winged helix family / cell
           cycle transcriptional regulator CtrA [Rhodospirillum
           rubrum ATCC 11170]
          Length = 239

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +E+ R +RA     P++ +S        +     G DD + KP    E++AR+ AI RR 
Sbjct: 60  IEVIRHLRASRINTPVLILSGLNESDRKVKGLGVGADDYLTKPFDKSELIARLQAIVRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  S +    G + V  D R   V G+   L  +E  ILE L   +G  + K Q  + +Y
Sbjct: 120 MGHSQSVVTVGQMEVNLDARTVSVAGDPVHLTGKEYGILELLTLRKGSTLTKEQFLNHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206
           G  DE  E  +++  I KLRKKL    G
Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKLAQATG 206


>gi|326382019|ref|ZP_08203712.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326199445|gb|EGD56626.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 233

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVA 113
           G   LE+ R  R  S++P + +    +    +DF    D+G DD V KP    E+LARV 
Sbjct: 63  GMDGLEVCR--RVRSELPQLPVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELLARVR 120

Query: 114 AIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           A+ RR   + +  E    G IR+ S  R   V GE   L  RE  +L +LM   G+ V++
Sbjct: 121 ALMRRSVAAVDEEEVLDIGGIRLDSRARRVVVDGEDLTLANREFDLLRFLMERAGEVVSR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             I +A++G  D       ++ HIS +R+K+
Sbjct: 181 DDIMTAVWGSTD-LRSSKTLDMHISWIRRKI 210


>gi|90414398|ref|ZP_01222375.1| putative DNA-binding response regulator [Photobacterium profundum
           3TCK]
 gi|90324511|gb|EAS41067.1| putative DNA-binding response regulator [Photobacterium profundum
           3TCK]
          Length = 219

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 22/219 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L  +G+IA    DG+  +       E W       DV  ++  L  K + +  L  I  
Sbjct: 19  GLESNGWIAELSSDGI--DALYRATSEPW-------DVIVLDLGL-PKLDGLTVLKSIRD 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S    L   ++  ++G DD + KP    E++AR+ A  RR   + N +  
Sbjct: 69  ENVNTPVVILSARNELTQRVEGLNAGADDYLTKPFQMVELIARLRAQLRR--STGNASPV 126

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             ++  S D R   V  QG+V  L   E ++L YLM N  K +++T++   IY   FD  
Sbjct: 127 IQVQELSLDTRTSNVLWQGQVVDLTALEFKVLSYLMHNTDKVISRTELVEHIYKQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + N +E  I ++R+    K+G D + + R LGY I+ N
Sbjct: 186 -DSNTIEVFIGRIRR----KIGNDVIKTVRGLGYRINAN 219


>gi|298243491|ref|ZP_06967298.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556545|gb|EFH90409.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 253

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 7/137 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAE 127
           ++PLI ++   +++  L  F+ G DD + KP +H+E++ARV A+ RR+K S    N    
Sbjct: 98  EIPLIFMTAQDTIEAKLQGFNIGADDYICKPYNHQELVARVQAVLRRIKKSGKTGNQSIR 157

Query: 128 TGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            G I +F       V G +   L   E  +L  LM + G+ V + Q+ + ++   D    
Sbjct: 158 GGQIELFPAELKVAVTGKQPVTLTPTEMHVLRVLMHSAGQVVNRDQLLAEVWN--DNENN 215

Query: 187 ENVVESHISKLRKKLRN 203
            N+V+ +I +LR KL +
Sbjct: 216 SNIVDVYIRRLRVKLED 232


>gi|260439186|ref|ZP_05793002.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
 gi|292808388|gb|EFF67593.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
          Length = 223

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 70  AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 129

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP++E  +L  L A+ G+   K Q+   ++G   EA + 
Sbjct: 130 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 188

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++ ++   F+ V + R +GY +
Sbjct: 189 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 220


>gi|209517909|ref|ZP_03266742.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501625|gb|EEA01648.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 225

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +     P++ ++   S+   ++   +G DD + KP   RE++AR+    RR   S
Sbjct: 63  LRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQSPS 122

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G +    D R   ++G    +  RER +LE L+   GK V K  +  AI+ L 
Sbjct: 123 KAGEVVCGDLSFDIDTRQFTLKGAPLNVTPRERSVLEALILRLGKTVTKPALVDAIFTLA 182

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE   E+ VE +IS+LRKKL
Sbjct: 183 DEP-SEDAVEIYISRLRKKL 201


>gi|323351770|ref|ZP_08087424.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|322122256|gb|EFX93982.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
          Length = 224

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 16/154 (10%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132

Query: 132 RV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            V         DG+D E+ G+ F L       L Y + N+   + KTQIF  ++G FD  
Sbjct: 133 TVNLSTNSTLKDGKDVELLGKEFDL-------LVYFLQNQNVILPKTQIFDRLWG-FDSD 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +VVE ++SK+RKKL+       + + R +GY
Sbjct: 185 TTVSVVEVYVSKIRKKLKGTAFAKNLHTLRSVGY 218


>gi|307131191|ref|YP_003883207.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Dickeya dadantii 3937]
 gi|306528720|gb|ADM98650.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Dickeya dadantii 3937]
          Length = 222

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 3/156 (1%)

Query: 68  RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125
           RAH  ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR   +++  
Sbjct: 67  RAHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNSGLASQI 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
               P  V    R+  V G+   L   E  I+E L+ N GK V+K  +   +Y    E  
Sbjct: 127 ISLPPFEVDLSRRELLVHGDPVKLTAFEYTIIETLIRNNGKVVSKESLMLQLYP-DAELR 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E + ++  + +LRKKL+     D + + R  GY  D
Sbjct: 186 ESHTIDVLMGRLRKKLQTANSHDVITTVRGQGYRFD 221


>gi|241205230|ref|YP_002976326.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859120|gb|ACS56787.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 223

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE +  +P + R     P+I ++     +  ++  D G DD + KP    E++AR+ A+ 
Sbjct: 57  GEGLSFIPDLRRTGKDTPIIVLTALNEPKERIEGLDLGADDYLGKPFLVEELMARLRAVL 116

Query: 117 RR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR      LK++  R    P+ +        V      LPRRE  +L  L     K V +
Sbjct: 117 RRSPELAELKITAGRMVIDPLHL-----SVTVDAVPLDLPRRELLVLAALARRNEKTVLR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + + +A+Y  ++E ++ N +++HIS+LRK+L +      + + R +GY
Sbjct: 172 STLEAAVYN-YEEEIQSNALDAHISRLRKRLIDAGAGVAIHNIRGVGY 218


>gi|294139946|ref|YP_003555924.1| DNA-binding response regulator [Shewanella violacea DSS12]
 gi|293326415|dbj|BAJ01146.1| DNA-binding response regulator [Shewanella violacea DSS12]
          Length = 237

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 6/150 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132
           P++ ++   S Q  +   D+G DD + KP H +E++AR+ A+ RR    ++     GP  
Sbjct: 74  PILILTARDSWQDKVAGLDAGADDYLTKPFHPQELIARLNALIRRSAGKASPLVHNGPFS 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           + +   + +  G +  L   E ++ E+ M + G+  +KT +   IY   D  ++ NV+E 
Sbjct: 134 INTSTLEVKKSGHLMSLSSSEYKLFEFFMLHLGEVKSKTVLIEHIYDQ-DFDLDSNVIEV 192

Query: 193 HISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
            I +LRKKL   N+LG   +++ R  GY +
Sbjct: 193 FIRRLRKKLDPDNQLGL--IETLRGQGYRL 220


>gi|284052127|ref|ZP_06382337.1| two component transcriptional regulator, winged helix family
           protein [Arthrospira platensis str. Paraca]
          Length = 227

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 6/147 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+   +R+  ++ P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR 
Sbjct: 60  LEICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRP 119

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V++NR + G ++   + +      +   L  +E ++LEYLM + G+ +  T+I 
Sbjct: 120 PILDSTVTSNRLQFGDLQFDCETQLAYRGQKAIELSEKESQLLEYLMRHPGQLLTHTEIH 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G  D+    NV+ + I  LR+K+
Sbjct: 180 QHLWGETDKKPSSNVLAAQIRLLRRKI 206


>gi|94501865|ref|ZP_01308376.1| hypothetical protein RED65_02198 [Oceanobacter sp. RED65]
 gi|94425998|gb|EAT10995.1| hypothetical protein RED65_02198 [Oceanobacter sp. RED65]
          Length = 221

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 2/136 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           +R  S  P++ ++    ++  +   D G DD + KP    E+LAR+ A+ RR +  S+N 
Sbjct: 66  VRKKSATPVMILTARDQIEDKIKGLDLGADDYMPKPFDVNELLARMRALLRRSVGESSNN 125

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                + +    R    +     L RRE  +LE L  ++ K + ++Q+  ++Y  +D+ +
Sbjct: 126 ITVQGLNINLQARTLSFENRDISLSRREFNLLEALATHQDKVMTRSQLEHSLYS-WDDEI 184

Query: 186 EENVVESHISKLRKKL 201
           E N +E HI  LRKKL
Sbjct: 185 ESNALEVHIHNLRKKL 200


>gi|319793239|ref|YP_004154879.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595702|gb|ADU36768.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 219

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA  Q +P++  +   S+Q  ++  D+G DD V KP    E+LAR+ A+ RR 
Sbjct: 60  LEVLRSLRARKQRMPVLIATARDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +  RAE       + +    R+  V G+   L  RE  ++E L+A  G  +++ Q+  
Sbjct: 119 --AAGRAEPVYEHMGVSINPATREVTVAGQPVVLSAREWAVIEPLLARPGMVLSRAQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y   DE +  N VE ++  LRK    KLG + + + R +GY +
Sbjct: 177 KLYSWKDE-ISSNAVEVYVHGLRK----KLGAEFIRNVRGVGYMV 216


>gi|302529718|ref|ZP_07282060.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438613|gb|EFL10429.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 238

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 12/151 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L + R IRA S +P++ ++   +    L   D G DD V KP   RE++ARV  + 
Sbjct: 67  GMNGLTVCRTIRASSDLPILMLTARSTEDDLLQGLDLGADDYVTKPYSPRELMARVRTLL 126

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRV-AK 170
           RR     N A+ GP+ V +   D E     V G        E RILE +MA+R  +V  +
Sbjct: 127 RR----TNAAKDGPLTVGALTVDKEKHEVAVGGNRIETTPGEFRILE-VMASRPDQVFTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            Q+   ++G FD  + +  ++ H+  LRKK+
Sbjct: 182 AQLLEHLHG-FDRYITQRAIDVHVMNLRKKI 211


>gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
 gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 248

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 86/166 (51%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +R+      +P+I ++        +   D+G DD + KP    E+ AR+ A+ R
Sbjct: 80  IEVCRRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMR 139

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++  ++ ++   G + V          G+   L   E R+L+YL+ + G+  ++ ++  
Sbjct: 140 RIRPGLTEDKVVVGDLEVDRTAHKVARAGQQVHLGPTEFRLLDYLIQHPGRVFSRERLLD 199

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++G  D  VE   V+ H+ +LRK L+ +   DP+ + R  GY+++
Sbjct: 200 AVWG-SDIYVEARTVDVHVGRLRKALKMEGLVDPIRTVRSAGYALN 244


>gi|302876257|ref|YP_003844890.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307686989|ref|ZP_07629435.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579114|gb|ADL53126.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 225

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 19/168 (11%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L ++  A    P++ ++   S+   +  F  G DD + KP H  E+L R+ AI RR    
Sbjct: 62  LGKLREASVFTPVLILTAKDSIDDKIKGFKLGADDYLVKPFHREELLLRLEAIIRRNGNH 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L   +    T    VF +  +  +QG+ F        ILEYL+ N+G  + K QI
Sbjct: 122 LKDHVLTFKDLSLNTKNKTVFINDSEIFLQGKQFD-------ILEYLLNNQGAILTKEQI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           F  I+G F+     +VVE + S LRK L+   G+D  + + R LGY +
Sbjct: 175 FDRIWG-FNSDTTVSVVEVYASNLRKSLKAH-GYDKYIKTVRGLGYML 220


>gi|76788510|ref|YP_330411.1| DNA-binding response regulator DltR [Streptococcus agalactiae A909]
 gi|76563567|gb|ABA46151.1| DNA-binding response regulator DltR [Streptococcus agalactiae A909]
          Length = 224

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R+  A  + P+I ++        ++  D G DD + KP    E+LAR+    R+   +
Sbjct: 63  LKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSSLI 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N+   G IR+ +D  + E +     L  +E  ++E  M N  + + K Q+ S ++G  
Sbjct: 123 RANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWGPS 182

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           D + E N +E  IS LRKKLR  K   + + +K F GYS++
Sbjct: 183 DNS-EYNQLEVFISFLRKKLRFLKADIEIITTKGF-GYSLE 221


>gi|323525907|ref|YP_004228060.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323382909|gb|ADX55000.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 219

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 7/163 (4%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL R +R A   VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR 
Sbjct: 60  MELLRRLRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRA 119

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  S +      + V    +  EV G+   L  RE  IL  L+ N+G   +++++  ++Y
Sbjct: 120 QGRSVDVIRYRELSVNPAAQAVEVAGKRVSLTSREWAILMQLLTNQGIPQSRSRLEESLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G + E +E N +E H+S LRK    KLG   + + R +GY ++
Sbjct: 180 G-WQEEIESNAIEVHVSNLRK----KLGAHLIRTVRNIGYVVE 217


>gi|254302887|ref|ZP_04970245.1| OmpR family response regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323079|gb|EDK88329.1| OmpR family response regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 224

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 7/176 (3%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           DV  ++  L  K  K  E+ R +R     P+I I+   S+   ++  D G +D + KP  
Sbjct: 47  DVVLLDLMLPKKSGK--EVCRELRKLGDAPIIVITAKDSVLDKVELLDLGANDYICKPFA 104

Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
             E+LAR+  + R  + SNN+       I++    +   +      L + E  ILEY M 
Sbjct: 105 MEELLARIRVVTRNKENSNNKHFYIENEIKMDISAKKVFLNEVEISLTKTEFLILEYFMK 164

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           N+G   ++ +I   ++G +D   EE +V+ +I+ LRKK+  K  +  + + R  GY
Sbjct: 165 NKGLSCSREKIIVGVWG-YDFDGEEKIVDVYINSLRKKIDPKSNY--IHTIRGFGY 217


>gi|74197595|emb|CAJ29527.1| two-component system response regulator [uncultured Aeromonas sp.]
          Length = 229

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 37/235 (15%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60
            +L++D  ++ DG +      G +++         WLQ         + A  + K E+  
Sbjct: 3   ILLVEDDVMLGDGMVDALRSSGYTVD---------WLQQ-------GLPALSVLKSEEFA 46

Query: 61  -----LELP---------RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106
                L LP         ++ R    +P++ ++   +L   +   D+G DD + KP   +
Sbjct: 47  ALILDLNLPDIDGISLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQ 106

Query: 107 EILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           E+ AR+ A+ RR K       E   ++++ + +    +GE   L   E ++L+ L+   G
Sbjct: 107 ELNARLRALVRRSKGQAQAVLEYEELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSG 166

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++K Q+  ++YG +DE  E N VE HI  LRKK  +    D + + R +GY I
Sbjct: 167 RVLSKDQLQQSLYG-WDEGAESNAVEVHIHHLRKKFYS----DLIRNIRGVGYII 216


>gi|134298200|ref|YP_001111696.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134050900|gb|ABO48871.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 227

 Score = 64.7 bits (156), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 7/165 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           E+ R+++    V +I ++    +   +   + G DD + KP    E+LAR+ A I  +  
Sbjct: 67  EVCRMLKKTENVAVIMLTARDEVDDRVKGLNLGADDYMVKPFSFEELLARIYARIRNQFP 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   GP ++  D R  E+Q E  V  L   E  +L++L+ N G  ++KT I   ++
Sbjct: 127 NLFGKVVVGPFQI--DDRRKEIQFENRVLELSHTEYELLKFLVLNHGLVLSKTMILDKVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D   EEN+VE +I  LR KL +K     + + R  GY +D +
Sbjct: 185 G-YDFGGEENIVEVYIRSLRDKLNDK-NHQIIRTLRRSGYRVDLS 227


>gi|328542159|ref|YP_004302268.1| Two component transcriptional regulator, winged helix family
           [polymorphum gilvum SL003B-26A1]
 gi|326411909|gb|ADZ68972.1| Two component transcriptional regulator, winged helix family
           [Polymorphum gilvum SL003B-26A1]
          Length = 223

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 8/218 (3%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           D+R L +    AL  D G +++  N+ E  +   ++   D++ ++  L   G   L++ R
Sbjct: 8   DNRNLCRGIENALL-DQGHAVDVLNNGEDADRFLATQGADLAIVDVNL--PGMSGLQVVR 64

Query: 66  IIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
            +R   S +P++ ++        +   D+G DD + KP    E+LAR+ A+ RR +    
Sbjct: 65  NLRLRKSAMPVLILTARGDTGDKVAGLDAGADDYLVKPFDMAELLARIRALSRRRQTLKP 124

Query: 125 RAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             E  G +      R          LPRRE  + E L+ N G+ V K  I   +YG   +
Sbjct: 125 VEEVIGSLTYNRAARKLCGTRGTLDLPRREMALFECLLDNAGRVVTKETIAETLYGSGSD 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E N VE  +S+LR+KL +  G + + + R LGY +D
Sbjct: 185 -IEPNAVELLVSRLRRKLHDT-GVE-IRTARGLGYLLD 219


>gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 229

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 16/207 (7%)

Query: 29  FNSLEFEE--WLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPL 75
           F  LEFE   +  +   + VS ++  L G  + VL           E+ + IR HS +P+
Sbjct: 17  FLQLEFEHEGYTVTVTYDGVSGLKEALEGDYDLVLLDIMLPGIDGFEVLKKIREHSDIPV 76

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135
           I ++    ++  ++  D G DD V KP    E+ ARV A  R+ K    +       +  
Sbjct: 77  IMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKPHLKKDVLKYSDIIM 136

Query: 136 DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
           D    EV+  G    L ++E  +LEYL+ N    + + +I   ++G +D   + N+V+ +
Sbjct: 137 DLTTHEVRRAGIKIELTKKEFDLLEYLIKNANIALTREKILEGVWG-YDYYGDTNIVDVY 195

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  LR K+ +      + + R +GY++
Sbjct: 196 IRYLRSKIDDPFDRKLIHTIRGVGYTL 222


>gi|300854069|ref|YP_003779053.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300434184|gb|ADK13951.1| predicted response regulator (CheY-like receiver domain and HTH
           DNA-binding domain) [Clostridium ljungdahlii DSM 13528]
          Length = 226

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 18/190 (9%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           Y A  G +G+ L  FN +EF+  +      D+          GE+V      IR  S V 
Sbjct: 29  YCATTGLEGIRL--FNKIEFKLVILDLMLPDID---------GEEVCS---TIRRISNVH 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR---AETGPI 131
           +  ++   +L   L   + G D+ + KP   RE+ ARV A++RRL  +      +  G +
Sbjct: 75  IFMLTAKVTLSDKLQGLNIGADEYLTKPCSPRELTARVNALFRRLSSAEEPEIISRDGLL 134

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +  D R  +++GE   +   E  IL  L  NRG+ +++ Q+   ++G+ D    +  ++
Sbjct: 135 VINHDKRCVKLKGEEIAMTPNEFNILYVLAKNRGRVLSRDQLIEQVFGI-DFEGSDRTID 193

Query: 192 SHISKLRKKL 201
            HI  +RKK+
Sbjct: 194 VHIKNIRKKI 203


>gi|271500465|ref|YP_003333490.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270344020|gb|ACZ76785.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 222

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 3/156 (1%)

Query: 68  RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125
           R+H  ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR   +++  
Sbjct: 67  RSHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNSGLASQI 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
               P  V    R+  V GE   L   E  I+E L+ N GK V+K  +   +Y    E  
Sbjct: 127 ISLPPFEVDLSRRELLVHGEPVKLTAFEYTIVETLIRNNGKVVSKESLMLQLYP-DAELR 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E + ++  + +LRKKL++    D + + R  GY  D
Sbjct: 186 ESHTIDVLMGRLRKKLQSANSHDVITTVRGQGYRFD 221


>gi|333030914|ref|ZP_08458975.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332741511|gb|EGJ71993.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 226

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 89/168 (52%), Gaps = 7/168 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++L+  R  + ++  P++ +S     +  +   + G DD ++KP H  E++AR+ A+ 
Sbjct: 59  GIELLQYTRFKKINT--PILVVSALGDPEDKIKALNYGADDYLSKPFHFGELVARINALT 116

Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR +  N  A    E   I++         +G +  L  +E ++L+ LM N  K +++T+
Sbjct: 117 RRSRSENTHASTLLECKGIQLNVTEHLVYKEGALIHLTLQEFKLLQLLMENLDKVLSRTE 176

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I ++++GL D     N+V+ +IS LR K+ +K     +++ +  GY I
Sbjct: 177 IINSVWGL-DYESNTNIVDVYISYLRNKIEDKSKAKIIETVQGRGYII 223


>gi|260219796|emb|CBA26687.1| Transcriptional regulatory protein qseB [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 222

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 9/177 (5%)

Query: 47  SAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105
           + ++  L GK G +VL+  R  R  +  P++ ++   ++   +   D+G DD V KP+  
Sbjct: 48  AVLDLGLPGKDGMEVLQALRAAR--NTTPVLVLTARDAVPDRIRGLDAGADDYVLKPVDL 105

Query: 106 REILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
            E+ AR+ ++ RR   V+ +  + G + +    R      E  PL  RE  +L  LM + 
Sbjct: 106 HELAARLRSLVRRSHGVAQDMLQAGALSLDPSARQVTWMDEAVPLSTREFDLLHTLMRSA 165

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G+ +++ Q+   +Y    E VE N +E HI  LR+KL+     D + + R +GY ++
Sbjct: 166 GRVLSREQLEQQMYSWGLE-VESNTIEVHIHHLRRKLQA----DVIQTVRGVGYMLN 217


>gi|16760106|ref|NP_455723.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142123|ref|NP_805465.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213052791|ref|ZP_03345669.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213428093|ref|ZP_03360843.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|73621401|sp|Q8Z7H2|PHOP_SALTI RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|25300977|pir||AH0646 transcription regulatory protein PhoP, regulator of virulence
           determinants STY1271 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16502400|emb|CAD08355.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137752|gb|AAO69314.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 224

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 63  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 219


>gi|325289243|ref|YP_004265424.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964644|gb|ADY55423.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 228

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 1/138 (0%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S VP+I ++        +   D G DD + KP     + ARVAA  RR      
Sbjct: 67  REIREISLVPVIFLTCMGGDGHIVTGLDRGGDDYIIKPYSFSVLQARVAAQLRRRGTVTG 126

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                P+++        + GE   L R+E  +L YL+ NRG+ +++  I+ A++    E 
Sbjct: 127 EISLPPLQINLTSGLVRLNGETIDLTRKEFLLLLYLVENRGQELSQAGIYEAVWSAPPET 186

Query: 185 VEENVVESHISKLRKKLR 202
           +  N V  H+S+LR+KLR
Sbjct: 187 M-GNTVRMHVSRLRQKLR 203


>gi|325104344|ref|YP_004273998.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
 gi|324973192|gb|ADY52176.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
          Length = 225

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 10/224 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD  L K+   AL  +D  +   ++ +  E+ L+ + + D   ++  L GK    
Sbjct: 3   ILIIEDDPTLSKNICDALSENDIHTETVYDGILAEKMLRKN-QYDCIILDVNLPGKTG-- 59

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L +  R +++  P+I ++ +  L   +  F++G DD + KP + RE+  RV ++ +R 
Sbjct: 60  LDLCKDFRQYNKYTPIIMLTAFGELDDKVAGFNAGADDYLTKPFYMRELSLRVNSLLKRS 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  E   I++     D ++     QG+   L  RE +IL  L++ RG+ V+K  + 
Sbjct: 120 TTLGTNIEQDTIKIGDLIIDTKIKKVNRQGKDIILTPREFQILLKLVSCRGELVSKNDLI 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I+G     V  N +E  I+ LRKK+    G + + +K   GY
Sbjct: 180 KEIWG-NSVDVNTNTIEVFINFLRKKIDKPFGQESIKTKVGYGY 222


>gi|239833816|ref|ZP_04682144.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
 gi|239821879|gb|EEQ93448.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
          Length = 222

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 4/149 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-G 129
           ++VP+I ++   SL   +   D+G DD + KP    E+ AR+ A  RR         T G
Sbjct: 71  NEVPVIILTANASLDGRIRGLDAGADDYLAKPFELSELEARIRAHLRRASQRTAPVVTCG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +R  ++ R   +  E   L  +E  +LE L+   G  V+KT +   IY  FD   +EN 
Sbjct: 131 LLRFDTNTRLFSIGDEPLSLAPKEHAVLEQLLRRIGTTVSKTALVQGIYN-FDSETDENA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +E +I +LRKKL        + + R LGY
Sbjct: 190 IEIYIHRLRKKLEGSRA--EIVTLRGLGY 216


>gi|229916056|ref|YP_002884702.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467485|gb|ACQ69257.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 221

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 8/165 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R ++A   +P+I ++     +     F+ G DD V KP    E+L R+ A+ RR + 
Sbjct: 61  ELCRRLKATLDIPVILLTALDEWEDKRQGFELGADDYVTKPFIPEELLFRLQAVSRRYQR 120

Query: 122 S-NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S  ++ + GP+R+  D R+ EV  +G++F LP++E  +L  L +  G+   + ++   ++
Sbjct: 121 SAASQIQAGPLRL--DLREYEVTLEGQLFYLPKKEFELLFQLASFPGRVYRREELIELVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G FD   +E  V+ HI +LR +  +      + + R +GY+++ N
Sbjct: 179 G-FDFEGDERTVDVHIKRLRNRFDHPAL--TIRTVRGVGYALEVN 220


>gi|172058186|ref|YP_001814646.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171990707|gb|ACB61629.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 220

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 2/141 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ P+I ++        +  FD G+DD + KP   R +L R+ A+ RR++ 
Sbjct: 62  EVAQQVRKTSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIRRIRT 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++    +   I +F    +  + G    L  +E +IL  L+ N G+ + + Q+   ++G 
Sbjct: 122 NDEEQLSFREITLFPASYNVLISGNAVILTLKEFQILHLLLENPGRVLEREQLIQQLWG- 180

Query: 181 FDEAVEENVVESHISKLRKKL 201
           FD   +   +++HI  LRKK+
Sbjct: 181 FDAFGDTRFLDTHIKNLRKKI 201


>gi|330836317|ref|YP_004410958.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
 gi|329748220|gb|AEC01576.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
          Length = 259

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 16/163 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +RA    P+I ++   +    +  F+ G DD V KP   +E++ RV AI+RRL+ +    
Sbjct: 67  LRATYSFPVIFVTSRGAESDRILGFELGADDYVVKPFSAKELVLRVRAIFRRLEGTTQLN 126

Query: 127 ETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             G   V  DG             + G++ PL   E RI+ YL++N G  + + Q+    
Sbjct: 127 RGGSSWVL-DGSVLLLDEVSHLFTIDGDLIPLTAAEWRIMSYLVSNAGILITRAQVLE-- 183

Query: 178 YGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              FD + E  + +V++HI  +R KL   LG   +++ R  GY
Sbjct: 184 -NCFDYSFEFYDRIVDTHIKNIRSKL-GALGSQWIETVRGYGY 224


>gi|331699682|ref|YP_004335921.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954371|gb|AEA28068.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 260

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 19/220 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           +++DD A V+D      G  G    ++L+G  +L        +   DV  ++  L G G 
Sbjct: 35  LVVDDDATVRDVVARYLGAAGHDVELALDGPGALRAAR----TTPPDVVVLDLMLPGLGG 90

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LE+ R +RA   + P+I ++        L   + G DD V KP   RE++ RV +I R
Sbjct: 91  --LEVCRALRADGDRPPIIMLTALGEEDDRLLGLELGADDYVTKPFSPRELVLRVGSILR 148

Query: 118 RLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R        E   G +RV    R   + G+   L  RE  +L +L+A+ G+   + ++ S
Sbjct: 149 RTAAPATAPELVDGGLRVDPAARVASLDGQPLALTTREFDLLAFLLAHPGQAFTREELLS 208

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
            ++G   E  + + V  H+ +LR+K+      DP   +R 
Sbjct: 209 RVWGW--EFGDRSTVTVHVRRLREKVEA----DPTAPRRI 242


>gi|237734987|ref|ZP_04565468.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381763|gb|EEO31854.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 228

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 1/159 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +R  S +P+I ++   S    +     G DD + KP +   +L  + A+++RL  
Sbjct: 70  QLLKKLREKSTIPVIMVTSKDSEIDEILALSYGADDYITKPYNPTILLLHIEAVFKRLHK 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +     IRV       E   +   L + E  I  YL+ N+GK V +  I + ++G  
Sbjct: 130 AEPKLTYQNIRVNLMKSTLEKDDQELLLSKNEMGIFYYLLMNQGKIVTRDDIMNYLWG-T 188

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D+ +++N +  ++++LRK+L     FD ++++R  GY +
Sbjct: 189 DKFIDDNTLTVNMTRLRKRLEKIGLFDVIETRRDQGYML 227


>gi|117621514|ref|YP_855892.1| transcriptional regulatory protein PhoP [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562921|gb|ABK39869.1| transcriptional regulatory protein PhoP [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 235

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L+L R +R      P+I ++   + Q  ++  ++G DD + KP    E+LAR+ A+ RR 
Sbjct: 71  LQLIRQLREQQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRS 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + R + G   +    ++  + G    L   E  ILEYLM N  + V+K Q+   +Y
Sbjct: 131 AGFISPRVKAGDYELDLSRKELTIAGTPVVLTSFEYLILEYLMRNARQVVSKQQLLDQLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G  D   + N +E  +S+LRKKL  +    P+ + R  GY
Sbjct: 191 G--DGEGDPNTIEVMVSRLRKKLDPEGTIQPISTIRRQGY 228


>gi|92114714|ref|YP_574642.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91797804|gb|ABE59943.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 233

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 15/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF-EEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D  LV  G  A     G +++   S+      LQ  A + V        G G  +
Sbjct: 3   VLLVEDDELVAAGIRAGLESHGWAVDTVASMAAARHALQVVASDIVVLDRGLRDGDGLTL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R   A  +VP++ ++   ++   +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 63  VEEWR--EAGKRVPVLVLTARDAISDRIAGLDAGADDYLVKPFDLDELVARLHALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +  RA      G +R     R    +G    L RRE  +LE  + + G  ++  Q+  +
Sbjct: 119 -AAGRAHPCIVHGALRFDPQARQVTWRGRPVTLSRRELVLLETFLQSPGSVLSANQLRDS 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YGL DE VE N +  HI  LR+K+   +    +++ R LGY +
Sbjct: 178 LYGLDDE-VESNALNVHIHHLRRKVAPAV----IETVRGLGYRL 216


>gi|238754408|ref|ZP_04615764.1| Two-component response regulator of virulence determinant [Yersinia
           ruckeri ATCC 29473]
 gi|238707441|gb|EEP99802.1| Two-component response regulator of virulence determinant [Yersinia
           ruckeri ATCC 29473]
          Length = 223

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D AL++        + G  ++   ++ E + +LQ  A  D++ I+  L   GE  L
Sbjct: 4   LVVEDNALLRHHLSVQMREMGHQVDAAEDAKEADYFLQEHA-PDIAIIDLGL--PGEDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R H +++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRWRNHQAKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E  P  +    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIIEFQPFMIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKKL+ +   D + + R  GY  D
Sbjct: 181 -DAELRESHTIDVLMGRLRKKLQVEHDKDVITTIRGQGYRFD 221


>gi|126731908|ref|ZP_01747712.1| two component response regulator [Sagittula stellata E-37]
 gi|126707735|gb|EBA06797.1| two component response regulator [Sagittula stellata E-37]
          Length = 226

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 7/169 (4%)

Query: 57  GEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   L L + +RA  S +P+I ++    +   +D   +G DD + KP H  E+LAR+  +
Sbjct: 56  GMDGLSLVKALRAAKSNLPVIFLTALSDVDDRVDGLMAGGDDYLVKPFHLSELLARITVL 115

Query: 116 YRRLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            RR K S           +++    R  + QG    L  +E  +L+  M N G+  ++T 
Sbjct: 116 GRRPKQSTQEPTELVVHDLKLNLLTRQAQRQGRNIDLLGKEFSLLQLFMENPGRIFSRTL 175

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   I+   FD      VVE+H+SKLR+K+        + + R +GY+I
Sbjct: 176 ILEKIWDFNFDPGT--TVVETHVSKLRQKVDKPFDVALIHTVRNMGYTI 222


>gi|257429162|ref|ZP_05605549.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257279643|gb|EEV10230.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
          Length = 219

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 87/167 (52%), Gaps = 6/167 (3%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L    R D++ ++  +   G    +L   ++    +P+I ++   +L      F SG DD
Sbjct: 49  LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 106

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156
            V KP   +E++ R+ A+ RR  +++N   T G + +     + +V  +   LP +E ++
Sbjct: 107 YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 166

Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           L +++A R K++  + QI   I+G +D   +E  V+ HI +LR++L+
Sbjct: 167 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLK 211


>gi|163813849|ref|ZP_02205243.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759]
 gi|158450719|gb|EDP27714.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759]
          Length = 223

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L + IR     P++ ++        +  F +G DD + KP    E+ ARVAA  RR +
Sbjct: 60  LTLCQKIRELITCPILFLTARVESADKIIGFQAGADDYIIKPFDLDELGARVAAHLRREQ 119

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N+A     G + +    R   V GE   L +RE  I+E L  N G+   + +I+  +
Sbjct: 120 RHRNKATIRFFGELTIDYSARTVTVAGEPVALSKREFDIVELLSLNAGQVFDRERIYETV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +GL  E   + V+E HI K+R KL        +D+    GY   WN
Sbjct: 180 WGLDGEGNSDTVME-HIRKIRAKLAACTLHSYIDTVWGCGYR--WN 222


>gi|91783748|ref|YP_558954.1| two component transcriptional regulator QseB [Burkholderia
           xenovorans LB400]
 gi|91687702|gb|ABE30902.1| Putative QseB, two component transcriptional regulator, winged
           helix family [Burkholderia xenovorans LB400]
          Length = 223

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 6/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R+  +   VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR +  
Sbjct: 67  LKRVRDSGKDVPVLVLTARGTVADRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQGR 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S  +     + V    +  +V     PL  RE  IL  L+ N+G   +++++  ++YG +
Sbjct: 127 SVEQIRYLDLTVNPAAQTVDVGTRRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG-W 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E +E N +E H+S LRKKL  KL    + + R +GY ++
Sbjct: 186 QEEIESNAIEVHVSNLRKKLGAKL----IKTVRNIGYVVE 221


>gi|332974487|gb|EGK11409.1| response regulator [Desmospora sp. 8437]
          Length = 237

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 10/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R IR    VP++ +S        +   + G DD + KP   RE+LARV A +RR++
Sbjct: 73  METCRRIRQQHTVPILLLSARDRELDKVIGLEIGADDYLTKPFSPRELLARVKAHFRRVE 132

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                      +GP+ +     +  + GE   L  +E +IL +L  +  + +++ Q++  
Sbjct: 133 RMKREMGPYTRSGPLSINEQTYEVFMDGEKVDLSAKEFQILSFLAKHPNQVLSREQLYQK 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           I+G   E  + N V  HI    K +R KLG D + +   +GY   W
Sbjct: 193 IWG--QEFGDLNTVTVHI----KNIRKKLGRDCIKTIWGVGYKFAW 232


>gi|297537645|ref|YP_003673414.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297256992|gb|ADI28837.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 227

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAET 128
           ++ +P++ ++   ++   +  F  G DD + KP   +E++AR+ AI RR     +N    
Sbjct: 70  NNSLPVLMLTARDTIDDRVYGFQLGADDYLVKPFALKELVARIQAITRRFHTRQHNEIIF 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G +R+    +   +  +   L  RE  +L Y++ N GK V+K QI  AI   +DEA   N
Sbjct: 130 GILRIDLTAKRAYLSDKSLELLPREWAVLVYILNNLGKVVSKEQILEAISD-WDEAPSSN 188

Query: 189 VVESHISKLRKKL 201
            +E +IS+LR KL
Sbjct: 189 AIEVYISRLRTKL 201


>gi|296120277|ref|YP_003628055.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296012617|gb|ADG65856.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 235

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 21/168 (12%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L + +R     P++ ++    +   +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 61  DLLKQLRTKKSTPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAAG 120

Query: 121 VSNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            S +  E G          +VF D  D E+      L  RE  I EYL  +RG+ V +T 
Sbjct: 121 ESESLLELGQGVTINLIHRKVFRD--DVEI-----VLTAREYSIFEYLALHRGRVVPRTD 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  I+   DE++  N+++ HIS LR+    KLG D ++++R LGY I
Sbjct: 174 LYDHIFDENDESL-SNLLDVHISNLRR----KLGRDVIETRRGLGYII 216


>gi|222871904|gb|EEF09035.1| predicted protein [Populus trichocarpa]
          Length = 284

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 9/225 (4%)

Query: 1   MFVLI-DDRALVKDGYI-ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M +LI +D  ++ DG + +L G   V     N  E +  L +S+  D+  ++  L     
Sbjct: 61  MRILIAEDDQVLADGLLRSLRGSGAVVSHVANGSEADTALMTSSEFDLLILDLGL--PKM 118

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LE+ + +R     +P++ ++   S++  +   D G DD + KP    E+ ARV A+ R
Sbjct: 119 HGLEVLKKLRGRGDALPVLILTAADSVEERVQGLDYGADDYMAKPFALSELEARVRALTR 178

Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R +  +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   
Sbjct: 179 RGMGGASSTIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVER 238

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +    DE V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 239 LCEWGDE-VSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 280


>gi|213417018|ref|ZP_03350162.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213580461|ref|ZP_03362287.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213612642|ref|ZP_03370468.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213648225|ref|ZP_03378278.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213864844|ref|ZP_03386963.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828350|ref|ZP_06546263.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 223

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 218


>gi|167755239|ref|ZP_02427366.1| hypothetical protein CLORAM_00744 [Clostridium ramosum DSM 1402]
 gi|167705289|gb|EDS19868.1| hypothetical protein CLORAM_00744 [Clostridium ramosum DSM 1402]
          Length = 228

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 1/159 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +R  S +P+I ++   S    +     G DD + KP +   +L  + A+++RL  
Sbjct: 70  QLLKKLREKSTIPVIMVTSKDSEIDEILALSYGADDYITKPYNPTILLLHIEAVFKRLHK 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +     IRV       E   +   L + E  I  YL+ N+GK V +  I + ++G  
Sbjct: 130 AEPKLTYQNIRVNLMKSTLEKDDQELLLSKNEMGIFYYLLMNQGKIVTRDDIMNYLWG-T 188

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D+ +++N +  ++++LRK+L     FD ++++R  GY +
Sbjct: 189 DKFIDDNTLTVNMTRLRKRLEKIGLFDVIETRRDQGYML 227


>gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
 gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
          Length = 231

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR  S+VP+I ++        L  F+ GVD+ ++KP   R ++ARV AI RR   
Sbjct: 71  EACREIRKISKVPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDAILRR--- 127

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +NN       + G I +        V+GE   L  +E  +L Y + N+G  +++  I + 
Sbjct: 128 TNNIGQDQIEQAGDIEINKAAHIVTVKGEPIELSFKEFELLSYFIQNKGIALSRENILNN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           ++  +D   +   +++H+    KKLRNKLG
Sbjct: 188 VWN-YDYFGDARTIDTHV----KKLRNKLG 212


>gi|116252033|ref|YP_767871.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256681|emb|CAK07769.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 219

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 6/131 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149
            ++G DD + KP    E+ AR+ ++ RR   + N   T GP+ +    R   + G+   L
Sbjct: 91  LNAGADDYMVKPFDLAELSARIGSVARRYAGNPNPNITLGPLAIDLAARSITLNGKAIVL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             RE  + E  +   G+ ++K Q+   +Y  FD  ++ N +E H+S+LRK    KLG   
Sbjct: 151 TAREWVLFEAFLQRPGQLLSKAQLEERLYS-FDREIDSNAIEVHVSRLRK----KLGTHV 205

Query: 210 VDSKRFLGYSI 220
           ++++R LGY +
Sbjct: 206 IETERGLGYRL 216


>gi|315641787|ref|ZP_07896791.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315482462|gb|EFU73001.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 234

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 7/167 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R  + + Q P + ++   +L+  +  F+ G DD + KP +  E+  RV ++ 
Sbjct: 65  GYEVLAQAR--KQNIQTPNLILTAKDALEDKITGFEKGADDYLTKPFYREELPMRVKSLL 122

Query: 117 RRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +R       N      +    + ++    GEV P+  +E  +L Y + N+   + K QIF
Sbjct: 123 KRSLGLFDENSLVYRDLTCSLNTKEVTYNGEVLPIQGKEFELLVYFIQNQRVILTKEQIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             I+G FD A    VVE ++S LRK LR   G D  + + R +GY +
Sbjct: 183 DRIWG-FDSATTLTVVEVYMSNLRKHLRTT-GIDKDLQTLRNVGYML 227


>gi|227534396|ref|ZP_03964445.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227188013|gb|EEI68080.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 231

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   +L   L  F+ G DD + KP H  E++ R+ A+ +R+     ++    G
Sbjct: 75  KTPVLILTAKDALTDKLHGFELGGDDYLTKPFHREELIMRLKALLKRIGHFFDDDGLTAG 134

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  V     +  +  +   L  +E  +L YL+ N+   + K QIF  ++G FD     +V
Sbjct: 135 PFVVHVTSHEVLINDQPVALNGKEFDLLVYLLQNQKTIITKDQIFDRLWG-FDSETAVSV 193

Query: 190 VESHISKLRKKLR 202
           VE ++S LRKKL+
Sbjct: 194 VEVYMSNLRKKLK 206


>gi|126737572|ref|ZP_01753302.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126720965|gb|EBA17669.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 225

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 13/158 (8%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A    P + ++    ++  ++  ++G DD ++KP    E+LAR+ A+ RR       A T
Sbjct: 69  AKVMTPALLLTAMGEVEDRVEGLEAGADDYLSKPFAMTELLARITALSRR---RQGEATT 125

Query: 129 GPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
              ++   G + ++       +GE+ PL  +E ++LE LM ++G+   +  +   ++ + 
Sbjct: 126 TLTKLEHKGLELDILAQKCSYKGEIIPLNPKEFKLLEVLMRSKGRVQTRAMLLERVWDIN 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD A   +VVE+H+S+LR K+        + + R  GY
Sbjct: 186 FDPAT--SVVETHMSRLRNKVEKPFDLKLITTVRGAGY 221


>gi|119776138|ref|YP_928878.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768638|gb|ABM01209.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 224

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 15/170 (8%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  R    H+  P+I ++        ++ F++G DD + KP H +E+LAR+ A
Sbjct: 57  GNGLTLLEKWRTEGIHT--PVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIHA 114

Query: 115 IYRRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +  R       A  G    +S        +  +V  +V  L   E R+L+  + +  K +
Sbjct: 115 LINR--AHGRPASPGKQLSYSGVVLDESQQTVQVGEQVHELTAMEFRLLKIFLLSPKKLL 172

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +K Q+   +Y  FD+  E NVVE +++ LRK    KLG   ++++R  GY
Sbjct: 173 SKAQLTDKLYQ-FDDEKESNVVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|157372224|ref|YP_001480213.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157323988|gb|ABV43085.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 220

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 15/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G++  GFN   F + L      + +  +A ++      L
Sbjct: 3   ILLIEDDKLIGDGIKA-----GLTRLGFNLDWFTDGLVGKNALESAPYDAVILDLSLPGL 57

Query: 62  ELPRIIRAHSQ----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +   ++R   Q    VP++ ++   +L+  +    SG DD + KP    E+ AR+ A+ R
Sbjct: 58  DGLDLLRQWRQAGHDVPVLILTARDALEQRVSGLQSGADDYLCKPFALTEVAARLQALIR 117

Query: 118 RLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R       +   G +   +  R     GE   L  RE  +LE  + N+G+ +A+  I   
Sbjct: 118 RRHGQLMPQLVHGNVVFDTATRSVSCNGEPVTLTPRELAVLELFLHNKGRVLARPLIQEK 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +Y  +D+ V  N VE HI  LR+KL N  GF  + +   +GY++
Sbjct: 178 LYN-WDDEVSSNAVEVHIHHLRRKLGN--GF--IRTIHGVGYTL 216


>gi|91978702|ref|YP_571361.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gi|91685158|gb|ABE41460.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
          Length = 219

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 15/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++ DG  A     G S++   + E  + + + +    SA+   ++      +
Sbjct: 3   ILVVEDDAMIADGIRAGLALAGASIDCVANCE--DAVTALSANSFSAVVLDIMLPDGSGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA     P++ ++    +   +   DSG DD + KP    E+    A +   ++
Sbjct: 61  DLLRKLRAGGDTTPVLLLTALDEVGDRIAGLDSGADDYLGKPFDLDEL---GARLRAIIR 117

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + RA T    G IR+F   R+  ++G   PL RRE  +L  LM   G   ++ ++   
Sbjct: 118 RRDGRAATCLEHGAIRLFPADRNATLEGAPVPLSRREFAVLHALMERPGVVRSRGELEER 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG  DE +E N VE HI  LR     KLG   +++ R +GY +
Sbjct: 178 LYGWGDE-IESNAVEVHIHNLRA----KLGRAAIETIRGIGYRM 216


>gi|88607685|ref|YP_505647.1| DNA-binding response regulator [Anaplasma phagocytophilum HZ]
 gi|88598748|gb|ABD44218.1| DNA-binding response regulator CtrA [Anaplasma phagocytophilum HZ]
          Length = 276

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 1/132 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
           +VP++ +S   S+   +     G DD + KP H  E+LAR+ A+ RR +    +    G 
Sbjct: 75  RVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAVVRRTRGHPESIVRVGN 134

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +  D +     G +  L ++E  ++E L +  G  + K    S +Y   DE  ++ ++
Sbjct: 135 ISINLDHKCVSCNGNIIHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 194

Query: 191 ESHISKLRKKLR 202
           +  + KLRKKL+
Sbjct: 195 DVFMCKLRKKLK 206


>gi|117925190|ref|YP_865807.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608946|gb|ABK44401.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 235

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 9/134 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRVFSDGRDPEVQG 144
           FD+G DD V KP   RE+L RV A+ RR +V +  +        GP+ V        V G
Sbjct: 96  FDAGADDYVTKPFSMRELLLRVKALMRRAQVVSLPSAAVEDLCFGPLTVDQTAHQVWVNG 155

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +   L   E ++L   + NRG+ + +  +   ++GL   AV+   +++H+ +LR+KL + 
Sbjct: 156 QEVQLTYMEFKLLVAFLENRGRLLTRDFLLDEVWGL-SAAVQTRTIDTHVKRLRQKLSDA 214

Query: 205 LGFDPVDSKRFLGY 218
             +  +++ R  GY
Sbjct: 215 GQY--IETLRGAGY 226


>gi|297624706|ref|YP_003706140.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297165886|gb|ADI15597.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 223

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 2/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S  P+I ++    + T ++  ++G DD + KP H  E+LAR+    R    
Sbjct: 65  EIARRVRKTSSTPIIILTAADDVATKVEMLNAGADDYLAKPFHTEELLARIRVQLRHQNA 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + +   G + +  + R      +   L  RE  +L YL  + G+   + +I   ++G  
Sbjct: 125 GSAQT-VGDMVIDINRRQLYWDKQEIRLSPREFDLLVYLCGSPGRVYTRQEIEQNVWG-E 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ HI+ +R KLR+  G+  + + R +GY+I
Sbjct: 183 ELPPSSNVVDVHIANIRAKLRDAGGYGLIRTVRGIGYAI 221


>gi|293394527|ref|ZP_06638823.1| two component response regulator [Serratia odorifera DSM 4582]
 gi|291422992|gb|EFE96225.1| two component response regulator [Serratia odorifera DSM 4582]
          Length = 220

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ DG        G +L+ F          +SA  D   ++  L   G   L
Sbjct: 3   ILLIEDDKIIGDGINVGLTKLGFNLDWFTDGVIGRQALTSAPYDAVILDLSL--PGIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  R A   VP++ ++   +L+  +    +G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DLLREWREAGHDVPVLILTARDALEQRVSGLQNGADDYLCKPFALAEVAARLQALIRRRH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G +   +  R   + GE   L  RE  +LE L+ N+G+ +A+  I   +Y 
Sbjct: 121 GQLTPQLVHGKLVFDTAARSVCLNGEPVILTPRELAVLELLLNNKGRVLARPLIQEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE HI  LR+KL N +    + +   +GY++
Sbjct: 181 -WDDEVSSNAVEVHIHHLRRKLGNGV----IRTVHGVGYTL 216


>gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
 gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
          Length = 229

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 17/153 (11%)

Query: 61  LELPRIIRAHSQVPLIGIS----DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            ++ R +R  S VP+I I+    DY  +       + G DD + KP    EI+AR+ AI 
Sbjct: 61  FDVCRQVRTFSNVPIIMITARGEDYEKIMG----LEIGADDYIVKPFSPGEIIARINAIL 116

Query: 117 RRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR+   N+  E+  I ++       +    ++  E+  L ++E  IL  L  N+ K   +
Sbjct: 117 RRITPKND--ESAKIFIYDNLEIDLNNFTVKINDEIISLTKKEIEILWTLATNQNKVFTR 174

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +   I+G FD   E   V++HI +LR KL N
Sbjct: 175 ENLLDLIWG-FDYFGESRTVDTHIKRLRAKLDN 206


>gi|256377936|ref|YP_003101596.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255922239|gb|ACU37750.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 227

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 6/180 (3%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF   E     Q+ A  D  A +  L+     G   L + R++R+   +P+I ++    
Sbjct: 25  EGFAVSEAVSGEQALALLDRRAFDVVLLDLMLPGVDGLHVCRVLRSRGDLPVIVVTARAD 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVFSDGRDPE 141
            +  +   ++G DD V KP+    + AR+ A+ RR   +    E   G + V  D R   
Sbjct: 85  AEDVIAGLEAGADDYVTKPLVAAVLAARIRALLRRSGGAAQADELRAGDLVVRQDNRTAH 144

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             GE   L R E R+L  L+A  G+ V + Q+ + ++G +D   +  +++ HI +LR+K+
Sbjct: 145 RAGEQVHLTRTEFRLLVELLAAEGRVVTREQLLNRVWG-YDYFGDTRLLDVHIRRLRRKV 203


>gi|213965034|ref|ZP_03393233.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
 gi|213952570|gb|EEB63953.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
          Length = 231

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 13/189 (6%)

Query: 40  SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           S A  D+  ++  L G      E+ + IR  S VP+I ++   +    +   + G DD V
Sbjct: 42  SKAEPDIVLLDLMLPGMSGT--EVCKNIRLKSSVPVIMVTARDTEIDKVVGLEIGADDYV 99

Query: 100 NKPIHHREILARVAAIYRRLKVSNNR---------AETGPIRVFSDGRDPEVQGEVFPLP 150
            KP   RE++AR+ A+ RR +  ++             GP+ +  +     V G+   +P
Sbjct: 100 TKPYSSRELIARIRAVLRRGRHDDSDDVEDLYEEVLRGGPVVLDVERHVVTVDGDDVAMP 159

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDP 209
            +E  +LEYL+ NRG+ + + Q+   ++G  D   +   ++ HI +LR K+ RN    + 
Sbjct: 160 LKEFDLLEYLLRNRGRVLTRGQLIDRVWG-SDYVGDTKTLDVHIKRLRSKIERNPSSPEF 218

Query: 210 VDSKRFLGY 218
           + + R LGY
Sbjct: 219 LVTVRGLGY 227


>gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 15/208 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGE 58
            +L+DD     +  I  F  D + LEG++ L     +E L  S R+    I   ++ + +
Sbjct: 8   ILLVDD-----EEEIISFIQDSLELEGYHVLTAGSGQEALIQSKRQPSLIILDVMMPEMD 62

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + E+ + +R  +Q P++ +S   S    +    +G DD + KP    E+ AR+ A  RR
Sbjct: 63  GI-EVCKQLRETTQCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIHAHLRR 121

Query: 119 LKVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  + + E G +R     +   G      G   PL  +E +I+E L  ++G+  ++ QI
Sbjct: 122 EQRIHTQKEQGILRFQALTIDCKGHAVSCNGHDLPLTNKEFQIVELLAMHQGQVFSREQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  ++GL D   +++ +  HI K+R KL
Sbjct: 182 YEKLWGL-DADGDDSTITEHIKKIRAKL 208


>gi|160893495|ref|ZP_02074280.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
 gi|156864890|gb|EDO58321.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
          Length = 227

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L RI +  + VP++ ++   ++   +   D+G DD + KP    E+LAR+    +R   S
Sbjct: 65  LRRIRKEGNNVPILLLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRVALKR--KS 122

Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +R ET  + +      +D  +  V GE   L  RE  +L  LM N+   + + ++ + +
Sbjct: 123 TDRQETHKLEIHGVSLDTDRHEVMVAGEPVELTNREFELLHTLMENKNIVMDREKLMNIV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G ++   E N+++ +I  LR K+ ++ G   + + R +GY I
Sbjct: 183 CG-YEYVGETNIIDVYIRYLRTKIDDRFGIKLITTVRGVGYVI 224


>gi|146310223|ref|YP_001175297.1| DNA-binding response regulator CreB [Enterobacter sp. 638]
 gi|145317099|gb|ABP59246.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 229

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 13/207 (6%)

Query: 24  VSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGE-KVLELPR-IIRAHSQVPLIGIS 79
           +S EGF    FE  L +   A     A+    +G  +    EL R ++  H  +P++ ++
Sbjct: 23  LSQEGFAVKAFERGLPALDEAHRQAPALAILDVGLPDISGFELCRQLLAQHPSLPVLFLT 82

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD 139
                   L   + G DD V KP   RE+ ARV  I RR++ S   ++   I  F +  +
Sbjct: 83  ARSDEVDKLLGLEMGADDYVAKPFSPREVCARVRTILRRMQKSAAPSDIVRIGQF-ELNE 141

Query: 140 PEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHI 194
           P       G   PL R E  +L+ L+   G+  ++ Q+   ++G  DE    +  V++HI
Sbjct: 142 PAAHISWCGHALPLTRYEFLLLKTLLNAPGRVFSRQQLMDKVWG--DEGDSFDRTVDTHI 199

Query: 195 SKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             LR KLR       P+ + R +GYS+
Sbjct: 200 KTLRAKLRAINADLSPISTHRGMGYSL 226


>gi|322385478|ref|ZP_08059122.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321270216|gb|EFX53132.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 224

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G + V        V G    L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDVTVNLSTNSTLVDGREVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  ++G FD     +VVE ++SK+RKKL+     + 
Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKIRKKLKGTAFANN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|325680782|ref|ZP_08160320.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324107562|gb|EGC01840.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 220

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 6/150 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R ++  P++ +S     +  L+  D G DD + KP     +LA++  I++R    +  +
Sbjct: 67  LRENADTPILIVSARTDKEDKLNGLDLGADDYIEKPYDIDILLAKIKGIFKRRYQRSMLS 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            +G     ++ +  E+ G    L  +E  +L  L+ N+GK + K  +FS ++G  D   E
Sbjct: 127 ASGVTLNLAN-KTAEIDGNPVQLSAKEFDLLALLIENQGKALKKEYLFSTVWG-SDSDSE 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
              +  HI++LR+    KLG DP ++KR L
Sbjct: 185 LQTLHVHINRLRQ----KLGDDPKNAKRLL 210


>gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
 gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
          Length = 236

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 109/226 (48%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F  +    E F + +  E ++   +E+   I   ++   +  +
Sbjct: 5   ILVVDDEKPIAD--ILKFNLEKEGFEVFCAYDGNEAVEQVKKEEPDLILLDIMLPHKDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR K 
Sbjct: 63  EVCREVRKSYDIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRRKS 122

Query: 121 ----VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               VS  +  T G + ++ D    + +GE   L  RE  ++ YL  + G+ + +  +  
Sbjct: 123 GAEEVSTQKELTVGDLTIYPDAYQVKRRGETIELTHREFELIHYLAKHLGQVMTREHLLQ 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           A++G +D   +   V+  + +LR+K+ +   + + + ++R +GY +
Sbjct: 183 AVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPNWIITRRGVGYYL 227


>gi|257124968|ref|YP_003163082.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257048907|gb|ACV38091.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 229

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 21/155 (13%)

Query: 61  LELPRIIRAHSQVPLIGIS----DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            ++ R +R  S VP+I I+    DY  +       + G DD + KP    EI+AR+ AI 
Sbjct: 61  FDVCREVRKFSNVPIIMITARGEDYEKIMG----LEIGADDYIVKPFSPGEIIARINAIL 116

Query: 117 RRLKVSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           RR+   N+ +E    ++FS        +    ++  E+  L ++E  IL  L  N+ K  
Sbjct: 117 RRITPKNDDSE----KIFSFDNLEIDLNNFTVKINNEIISLTKKEIEILWTLATNQNKVF 172

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   I+G FD   E   V++HI +LR K+ N
Sbjct: 173 TRENLLDLIWG-FDYFGESRTVDTHIKRLRAKMDN 206


>gi|288960040|ref|YP_003450380.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288912348|dbj|BAI73836.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 221

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL L R  R  S VP++ ++   ++   +   D G DD + KP    E  ARV A+ 
Sbjct: 59  GFEVLTLIR--RRGSTVPVMILTAREAVADRVKGLDLGADDYLLKPFDPAEFEARVRALM 116

Query: 117 RRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR + +       GP+R         + G V  L +RE  +LE L+   GK V K ++  
Sbjct: 117 RRGQGTPIPELACGPLRYDRSTATVTLNGRVLDLRKRELAVLEGLITRAGKVVPKDRLAG 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G FDE V  N +E ++++LRKKL
Sbjct: 177 EVFG-FDEPVAPNAIELYVARLRKKL 201


>gi|325261598|ref|ZP_08128336.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
 gi|324033052|gb|EGB94329.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
          Length = 219

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 15/211 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL KDG++     DG +L+     +++  L              ++  GE    +   IR
Sbjct: 15  ALEKDGHLVDTETDGTALQPSRCQQYDLLLLD------------VMMPGEDGFSVCGRIR 62

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A    P++ ++        +  F  G DD + KP    E+ ARV A  RR ++   +   
Sbjct: 63  AEVDCPILFLTARAEDAALVQGFGLGADDYIKKPFSIAELRARVNAHLRREVRQPAHTLN 122

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G +R     +     G   P  + E  I EYL  + G+   K Q++ A++G FD   + 
Sbjct: 123 RGGVRFDMQAKMAAAGGNPLPFTKGEYAICEYLALHAGQVFTKEQLYEAVFG-FDAEGDP 181

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + +  HI  +R KL+ + G + +++   +GY
Sbjct: 182 SSIAEHIKNIRAKLKTE-GINSIETVWGVGY 211


>gi|317491839|ref|ZP_07950274.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920273|gb|EFV41597.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 223

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        D G  ++     +  ++       D++ ++  L   GE  L
Sbjct: 3   ILVVEDNGLLRHHLSVQMRDMGHQVDAAEDAKEADFFVKEQTPDIAIVDLGL--PGEDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  RA   ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRWRAEQIKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P ++    R+  V   +  L   E  I+E L+ N  K V+K  +   +Y 
Sbjct: 121 GLASQVITLPPFQIDLSRRELTVNENLIKLTAFEYTIIETLIRNHAKVVSKDALMLQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKKL+N+   + + + R  GY  D N
Sbjct: 181 -DAELRESHTIDVLMGRLRKKLQNEYPQEVITTVRGQGYRFDIN 223


>gi|197302707|ref|ZP_03167761.1| hypothetical protein RUMLAC_01437 [Ruminococcus lactaris ATCC
           29176]
 gi|197298289|gb|EDY32835.1| hypothetical protein RUMLAC_01437 [Ruminococcus lactaris ATCC
           29176]
          Length = 228

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 4/139 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R    +P+I IS   + Q  +D    G DD + KP    E+LAR+ +  RR++  N++ 
Sbjct: 67  VRKKFTIPVIIISAKETTQNKIDLLRLGADDYITKPFDMEEVLARIESNLRRVQFQNSQT 126

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           E      + +  +     + G    L  +E  ILE LM    K  +K+ +F +++   + 
Sbjct: 127 ECLQYNNLTLDLEKNTAFLNGIELSLTAKEFGILELLMKYPDKVFSKSNLFQSVWDT-EY 185

Query: 184 AVEENVVESHISKLRKKLR 202
             E+N +  HIS LR KL+
Sbjct: 186 IAEDNTLNVHISNLRNKLK 204


>gi|166033276|ref|ZP_02236105.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC
           27755]
 gi|226324215|ref|ZP_03799733.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758]
 gi|238925827|ref|YP_002939345.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656]
 gi|257414028|ref|ZP_04745025.2| DNA-binding response regulator VicR [Roseburia intestinalis L1-82]
 gi|323341562|ref|ZP_08081799.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|166027633|gb|EDR46390.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC
           27755]
 gi|225207764|gb|EEG90118.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758]
 gi|238877504|gb|ACR77211.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656]
 gi|257201430|gb|EEU99714.1| DNA-binding response regulator VicR [Roseburia intestinalis L1-82]
 gi|291540566|emb|CBL13677.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
 gi|323091013|gb|EFZ33648.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 236

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 83  AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP++E  +L  L A+ G+   K Q+   ++G   EA + 
Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 201

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++ ++   F+ V + R +GY +
Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233


>gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1]
 gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1]
 gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 225

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S  P+I ++    +Q  ++  DSG DD + KP    E+LARV A  RR+ 
Sbjct: 64  LEVARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRV- 122

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              N A TG +RV       DGR+    G    L  +E  +LE L  N GK  ++ +I  
Sbjct: 123 ---NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NVV+ +I  LR+KL        + + R +GY +
Sbjct: 180 KVWPEYTGG--SNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222


>gi|328544892|ref|YP_004305001.1| phosphate regulon transcriptional regulatory protein [polymorphum
           gilvum SL003B-26A1]
 gi|326414634|gb|ADZ71697.1| Phosphate regulon transcriptional regulatory protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 231

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA ++   +P+I ++        +    +G DD V KP    E++ARV AI R
Sbjct: 61  IELCRRLRARAETERLPVIMLTARGEEAERIRGLATGADDYVVKPFSVPELMARVRAILR 120

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  V +    +G I +  +       G+   L   E R+LE+LM + G+  ++ Q+  
Sbjct: 121 RARPEVVSTMLRSGDIELDRETHRVRRGGKEIHLGPTEFRLLEFLMTSPGRVFSREQLLD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK +      DP+ + R  GY+ +
Sbjct: 181 GVWG-HDVYVDERTVDVHVGRLRKAINRGKVKDPIRTVRGAGYAFN 225


>gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 225

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S  P+I ++    +Q  ++  DSG DD + KP    E+LARV A  RR+ 
Sbjct: 64  LEVARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRV- 122

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              N A TG +RV       DGR+    G    L  +E  +LE L  N GK  ++ +I  
Sbjct: 123 ---NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NVV+ +I  LR+KL        + + R +GY +
Sbjct: 180 KVWPEYTGG--SNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222


>gi|322373046|ref|ZP_08047582.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus sp.
           C150]
 gi|321278088|gb|EFX55157.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus sp.
           C150]
          Length = 219

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L+    IR     P++ I+        +     G DD + KP   +E+ ARVAA  RR  
Sbjct: 60  LQFCHEIRDQVDCPILFITARTQEGDIVQGLSYGADDYICKPFGVKELQARVAAHLRRES 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +++   G  +     ++  V+ ++  L + E  I ++L  N+G+  +K QI++ +YG
Sbjct: 120 RERHHKLSLGDFQFDLSAQELYVENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D+     V E HI  +R KL++ +G +P+++   +GY   W+
Sbjct: 180 YEDKGSPTAVAE-HIKNIRAKLKD-VGQNPIETVWGIGYK--WH 219


>gi|307294613|ref|ZP_07574455.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879087|gb|EFN10305.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 233

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +V    R +   + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ 
Sbjct: 62  GIEVCRRLRRLNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVL 121

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR++     A  G    FSD      G      G+V PL   E R+L++ + + G   ++
Sbjct: 122 RRVRP----ALAGETLTFSDVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
            ++  +++G  D  +E   V+ HI +LRK +     + D + + R  GY++D
Sbjct: 178 ERLLDSVWGQ-DSDIELRTVDVHIRRLRKAINGDGRYQDIIRTVRSAGYALD 228


>gi|311741763|ref|ZP_07715574.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311314769|gb|EFQ84675.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 226

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 14/169 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I +S   +    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRQTSSVPIIMVSAKDTEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGVA 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V     E G +R+  D     V G    LP +E  +LE+ + N G+ + + Q+   +
Sbjct: 122 EDDVEGASLEAGRVRMDVDRHLVTVDGTETRLPLKEFELLEFFLRNPGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221
           +G  D   +   ++ H+    K+LR K+  DP +     + R LGY  D
Sbjct: 182 WG-ADYVGDTKTLDVHV----KRLRAKIEVDPANPVTLTTVRGLGYKFD 225


>gi|237793594|ref|YP_002861146.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229263769|gb|ACQ54802.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 235

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR HS+VP+I IS   S    +   ++G DD + KP  +  +LA++  + RR+  S  + 
Sbjct: 70  IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 129

Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +T     G + ++++    E +G    L + E  +L YL+ N  K V++  +   ++   
Sbjct: 130 DTDFLKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLLKNINKIVSRDTLLEILWSDT 189

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  +++N +  ++++LRK+L      + +++KR  GY +
Sbjct: 190 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 227


>gi|210612997|ref|ZP_03289562.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
 gi|210151360|gb|EEA82368.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
          Length = 223

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 13/187 (6%)

Query: 40  SSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           SSA  D+  ++  L    G  V EL   IR  SQVP+I ++     +  +   D  VDD 
Sbjct: 42  SSAHFDLILLDIMLPKIDGFTVCEL---IRKQSQVPIIMLTALNGEEEQIRGLDLQVDDY 98

Query: 99  VNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
           + KP     ++ ++ A+ RR  +     +       + +  D     V G  F L +RE 
Sbjct: 99  ITKPFSMPILVRKIGAVLRRSSMIPEQEHQTITYKNLVLDMDSYTAVVDGVSFDLTQREF 158

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
            +L  L+ N+G+ + +  +   ++  +D   +E VV++HI  LRK    KLG D + + R
Sbjct: 159 EVLRELLLNQGRVLTRQNLLDKLWK-YDFYGDERVVDTHIKNLRK----KLGIDFIQTIR 213

Query: 215 FLGYSID 221
            +GY ID
Sbjct: 214 GVGYKID 220


>gi|77406279|ref|ZP_00783346.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77175132|gb|EAO77934.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
          Length = 205

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R+  A  + P+I ++        ++  D G DD + KP    E+LAR+    R+   +
Sbjct: 44  LKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSSLI 103

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N+   G IR+ +D  + E +     L  +E  ++E  M N  + + K Q+ S ++G  
Sbjct: 104 RANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWGPS 163

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           D + E N +E  IS LRKKLR  K   + + +K F GYS++
Sbjct: 164 DNS-EYNQLEVFISFLRKKLRFLKADIEIITTKGF-GYSLE 202


>gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
 gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
          Length = 229

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +R  ++   +P+I ++        +   D+G DD + KP    E+ AR+ A+ R
Sbjct: 62  IEVCRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++  ++++R     I +          G    L   E R+L++ + + G+  ++ Q+  
Sbjct: 122 RIRPGLADDRVNHADIIMDRVAHRVSRAGREVHLGPTEFRLLDHFLKHPGRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           A++G  D  VE   V+ H+ +LRK L  +   +P+ + R  GYS+D N
Sbjct: 182 AVWG-SDVYVEARTVDVHVGRLRKALNVEGTVNPIRTVRSAGYSLDLN 228


>gi|329768935|ref|ZP_08260362.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
 gi|328836652|gb|EGF86310.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
          Length = 221

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 2/149 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129
           +  P+I ++   +L+  +   DSG DD + KP    E+LAR+  + RR   ++ N  +  
Sbjct: 71  NNTPVILLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNYGLATNIIQIE 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +    +      E+  L  +E  +LEYLM N+G  +++ QI + ++    E    N+
Sbjct: 131 DVVLDISKKQVTKSKELIDLTGKEYEVLEYLMKNKGSILSRDQILNHVWDYNYEGA-SNI 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+  I  +RKKL N      + +KR LGY
Sbjct: 190 VDVIIKNIRKKLSNGEDSTIIYTKRGLGY 218


>gi|323139869|ref|ZP_08074898.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322394879|gb|EFX97451.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 225

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 2/159 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           LP I      + ++ ++   SL   ++  D+G DD + KP    E+LAR+ A  RR   +
Sbjct: 63  LPEIRTLRPNIRVLMVTALRSLDDRVNGLDAGADDYLIKPFAPDELLARIRASLRRPGAA 122

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G +    +  + +V+G    L +RE  +LE LM   G+ V  T +   IYGL 
Sbjct: 123 PIPPVVLGQLSFDLNLHEAQVRGRALALHKRELLLLETLMRRAGRAVTYTVLIDEIYGL- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           DE V+ + ++  +S+LR+KLR+      + + R +GY I
Sbjct: 182 DEQVQNDALKMLVSRLRQKLRDADAGVEIYATRSVGYMI 220


>gi|298241831|ref|ZP_06965638.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554885|gb|EFH88749.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 244

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 94/195 (48%), Gaps = 19/195 (9%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           EWL+   + D+  ++  L  KG  +L +   +R      ++ I++  ++Q  +   +SGV
Sbjct: 39  EWLEQ--QPDLVIVDPVL--KGVDILGMCEDLRTKHDTLVLVITEGKNVQDEIRCLESGV 94

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLP 150
           DD + KP    ++LAR+ A+ RR + +  R  +     GP+ + S   +  ++G+   L 
Sbjct: 95  DDYLRKPFFPSQLLARIRAVSRRARSTLERRPSSVLTVGPVCIDSLHNEARIRGKTVHLT 154

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
             E ++L  L  N        QI + ++G +D   +  +V++HI    + LR K+  DP 
Sbjct: 155 PTESKLLHLLAMNANDVCTANQIVTHVWG-YDGDGDTCLVKAHI----RHLRQKVELDPS 209

Query: 211 DSKRFL-----GYSI 220
           +    L     GY++
Sbjct: 210 NPHSILTVTGVGYTL 224


>gi|289450569|ref|YP_003475161.1| response regulator receiver domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185116|gb|ADC91541.1| response regulator receiver domain protein [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 232

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 19/209 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEF--EEWLQSSAREDVSAIEAF-----------LIGK 56
           + K  +I +  DD V  E   SL F  E +  SSA     AIE F           ++  
Sbjct: 1   MAKGPHILICDDDPVVHESL-SLYFDNEGFKHSSAYNGSEAIEHFHSDNPDLIVLDMMMP 59

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
               +++ R IR  S VP+I ++        +   + G DD + KP   RE++AR+ A+ 
Sbjct: 60  EMNGVDVCREIRRMSNVPIIMLTAKSEEIDKVVCLEIGADDYITKPFSVREVVARIKAVL 119

Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR+      S++  +   + +       +V+GEV P   +E  IL  L +N GK +++  
Sbjct: 120 RRITETPVTSSDCLKLPDLELTPFNYQVKVRGEVVPFTPKEFEILYMLASNPGKVISRED 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I   I+G   E  +   +++H+ ++R+K+
Sbjct: 180 IMQKIWGYNYEG-DLRTIDTHVKRIRQKI 207


>gi|84515126|ref|ZP_01002489.1| two-component response regulator [Loktanella vestfoldensis SKA53]
 gi|84511285|gb|EAQ07739.1| two-component response regulator [Loktanella vestfoldensis SKA53]
          Length = 216

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 28/218 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIR 68
           LV +GY     DDG++ E          L  S   D   ++  L G+ G +VL+  R   
Sbjct: 16  LVTEGYAVDIADDGIAAEA---------LGVSQPYDTIVLDMGLPGRDGMQVLKNWRA-- 64

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A  + P++ +S        +D  D+G DD + KP H  E+ AR+ A+ RR        + 
Sbjct: 65  AGMRAPVLILSARDGWTERVDGLDAGADDYLTKPFHMPELSARLRAMIRR-----KSEQA 119

Query: 129 GPI----RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            P+     V  D R  +V   G+   L  +E  +L YL  + G+ V++T++   IY   D
Sbjct: 120 SPVFERDDVVFDSRINQVMVAGQGISLTAQELAVLSYLFHHAGRLVSRTELSQHIYH-HD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E N +   I+    +LRNKLG   +D+ R  GY I
Sbjct: 179 GERESNTIVVFIN----RLRNKLGDSLIDTVRGRGYMI 212


>gi|268609558|ref|ZP_06143285.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 235

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 19/198 (9%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L KDGY  L   DG  ++  F +L            D+  ++  L GK     ++ R IR
Sbjct: 26  LEKDGYSVLLCHDGDDAVVKFKALS----------PDMVLLDIMLPGKDG--WQVCREIR 73

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S VP+I I+        +   + G DD + KP   +E++AR+ A+ RR+    +  E 
Sbjct: 74  KISNVPIIMITAKGETIDKVIGLELGADDYIVKPFDAKEVIARINAVTRRVGTGISEPEQ 133

Query: 129 GPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             +      V  D  + +V G++   P +E  +L YL +N  +   + Q+   ++G F+ 
Sbjct: 134 KEVHYDKLSVNMDSYELKVNGKIIDTPPKELELLYYLASNPNRVYTRDQLLDEVWG-FEY 192

Query: 184 AVEENVVESHISKLRKKL 201
             +   ++ HI +LR+KL
Sbjct: 193 YGDSRTIDVHIKRLREKL 210


>gi|163758090|ref|ZP_02165178.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43]
 gi|162284379|gb|EDQ34662.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43]
          Length = 223

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 14/209 (6%)

Query: 23  GVSLEGFNSLEFEE----WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78
           G+S EG+ SL +E      L+++ RE   AI   L+  G    E+ R +RA      I +
Sbjct: 19  GLSAEGY-SLTWEANGRAGLETARREQFDAIILDLMLPGMDGREICRRLRAEGVSTKILM 77

Query: 79  SDYPSLQTTLDFFDS---GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIR 132
               +L+TT D       G DD ++KP    E+ AR+  + R L  +         G ++
Sbjct: 78  --LTALETTADLVKGLRMGADDYLSKPFAFDELTARLEVLTRGLPATRQPPHILSAGLLQ 135

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           + +     E  G    L   E  +LE LM  RGK V + +I   ++G  D+    NV++ 
Sbjct: 136 LDTAAVQSEFDGVPVALTSLEHGLLELLMEERGKVVTRARILKRVWG-TDQDPLTNVIDV 194

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ +LR KL++    D + + R  GY +D
Sbjct: 195 YVRRLRSKLKSAGAPDMITTVRGRGYRLD 223


>gi|119963579|ref|YP_946689.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119950438|gb|ABM09349.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 220

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 14/174 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G    E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ 
Sbjct: 51  GTPGTEVCRQLRQRSSVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 110

Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR     ++  +  + GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q
Sbjct: 111 RRQGEPEELITSTVQAGPVRMDIERHVVSVNGVQVSLPLKEFELLEMLLRNSGRVLTRGQ 170

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
           +   ++G  D   +   ++ H+    K+LR+K+  DP   +     R LGY  +
Sbjct: 171 LIDRVWG-SDYVGDTKTLDVHV----KRLRSKIEPDPSAPRYLVTVRGLGYKFE 219


>gi|254248187|ref|ZP_04941507.1| hypothetical protein BCPG_03014 [Burkholderia cenocepacia PC184]
 gi|124874688|gb|EAY64678.1| hypothetical protein BCPG_03014 [Burkholderia cenocepacia PC184]
          Length = 134

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 13/129 (10%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFP 148
            G DD + KP    E+ AR+  + RR + +    +T    GP+++    R     GE   
Sbjct: 3   GGGDDYLTKPFDPEEMAARLEVLLRRSQAAPATFDTTLVVGPLKLDLISRKAFRDGEEIV 62

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207
           L   E R+LEY+M N G+ + +T +F A++G  FD     N++E H+ +LR+K+      
Sbjct: 63  LLPTEYRVLEYMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIEVHMGRLRRKI------ 114

Query: 208 DPVDSKRFL 216
           DP D+K+ +
Sbjct: 115 DPSDAKQMI 123


>gi|149279033|ref|ZP_01885167.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149230312|gb|EDM35697.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 232

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 5/185 (2%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           L+ + + D   I   ++  G   +++ R IR  ++ VP++ ++   S +  +   DSG D
Sbjct: 37  LEMAMKHDFDLIILDIMLSGMNGIQVCREIRKGNNNVPVLMLTALSSTENIITGLDSGAD 96

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRE 153
           D + KP    E+ AR+ ++ RR KV ++   T  I    V +  +     G+   L   E
Sbjct: 97  DYLVKPFKFAELEARIRSLVRRSKVVSSPRSTQSISGLEVDTLAKTVSRDGKTINLTATE 156

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            R+LEY + N+   +++ QI   ++ + D  +  NVV+ +I+ LRKK+ N      + + 
Sbjct: 157 YRLLEYFIQNQNVVLSRIQILENVWDI-DFNMGTNVVDVYINYLRKKIDNGYQTKLIHTV 215

Query: 214 RFLGY 218
             +GY
Sbjct: 216 FGMGY 220


>gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51]
 gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 17/158 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++    L+  ++ F+ G DD ++KP   RE++ARV A+ RR  +
Sbjct: 61  EICKEIRKISAVPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRRTDI 120

Query: 122 SNNRAETGPI-RVFS-------DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKT 171
                ET P+  V S       D    EV+   EV PL   E +IL  L    G+  ++ 
Sbjct: 121 -----ETSPLAEVISYDNGLVIDNSRHEVRFNKEVIPLTPTEFKILGSLAKYPGRVYSRG 175

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           Q+   + G  D   ++ V+++HI KLR+KL  K+  DP
Sbjct: 176 QLVEIVQG-HDFGGDDRVIDAHIKKLRQKLE-KVPSDP 211


>gi|326408629|gb|ADZ65694.1| Transcriptional regulatory protein PHOP [Brucella melitensis M28]
 gi|326538351|gb|ADZ86566.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis M5-90]
          Length = 229

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 8/155 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R+   +P++ ++        +   D+G DD V KP H  E+L R+ A+ RR    +++  
Sbjct: 68  RSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLTRLRALIRRAAGHASSEF 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y   FD   
Sbjct: 128 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + +LRK    K+G D +++ R +GY +
Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 216


>gi|313116090|ref|ZP_07801513.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310621596|gb|EFQ05128.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 227

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 4/139 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-- 124
           +R  S VP+I IS   + Q  +D    G DD + KP    E+LAR+ +  RR++   +  
Sbjct: 66  VRECSTVPIIVISAKGTTQNKVDLLRLGADDYITKPFDMEEVLARIESNLRRVQFQKDNP 125

Query: 125 -RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G + +  +     +QG    L  +E  ILE LM    K  +K  +F +++   + 
Sbjct: 126 THLRHGDLVLDLNDNTAFLQGSELTLTAKEFAILELLMKYPDKIFSKANLFQSVWNA-EY 184

Query: 184 AVEENVVESHISKLRKKLR 202
             E+N +  HIS LR KL+
Sbjct: 185 ISEDNTLNVHISNLRNKLK 203


>gi|239638181|ref|ZP_04679133.1| heme response regulator HssR [Staphylococcus warneri L37603]
 gi|239596202|gb|EEQ78747.1| heme response regulator HssR [Staphylococcus warneri L37603]
          Length = 224

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 89/180 (49%), Gaps = 4/180 (2%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           D++ ++  +   G    EL  +I+    +P+I ++   +L      F SG DD + KP  
Sbjct: 47  DIAIVDIMM--HGMDGFELCHMIKEVYDLPVIMLTARDALSDKERAFISGTDDYLTKPFE 104

Query: 105 HREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
            +E++ R+ A+ RR  +  +   T G + +     +  V G+   LP +E ++L  L +N
Sbjct: 105 VKELIYRIKAVLRRYHIHADETLTIGNLTLHQAYMEVVVNGKTMTLPNKEFQLLFLLASN 164

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +  ++T +   I+G +D   +E  ++ HI +LR++L+       + + R  GY ++ +
Sbjct: 165 EKQIFSRTHLIEKIWG-YDYEGDERTIDVHIKRLRQRLQQLDSDVTIKTVRGQGYKVEHH 223


>gi|322389821|ref|ZP_08063363.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321143481|gb|EFX38917.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 217

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP++ ++ +      L  F    D  + KP     +  R+ AI+++L+
Sbjct: 60  LEVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGEMADGYLEKPFSLSLLKVRIEAIFKKLQ 119

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  R  T G  RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++ 
Sbjct: 120 PS--RVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215


>gi|315499028|ref|YP_004087832.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315417040|gb|ADU13681.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 226

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 16/169 (9%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  R     P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ 
Sbjct: 59  GVSVLE--RWRRDGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALV 116

Query: 117 RRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR   +   A+     G +R+        V GE   L   E R+L Y+M ++ + +++T+
Sbjct: 117 RR---AAGHAQPLLVCGGVRLDPRAARASVNGEPLRLTSLEYRLLHYMMLHQSRVISRTE 173

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +Y   FD   + N +E  + +LRK    K+G + +++ R LGY +
Sbjct: 174 LVEHLYDQDFDR--DSNTIEVFMGRLRK----KIGTERIETVRGLGYRL 216


>gi|222528319|ref|YP_002572201.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455166|gb|ACM59428.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 225

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 80/150 (53%), Gaps = 2/150 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130
           Q P++ ++   S++  +   D+G DD + KP    E+LARV A+ RR  ++ +   +   
Sbjct: 72  QTPVLCLTAKDSIEDRVTGLDAGADDYLVKPFSFDELLARVRALLRRYSQIKDPIIQIKD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + ++ R     G+V  L  +E  +LEYL  N+G+ + ++QI   ++  +D     N+V
Sbjct: 132 LVIDTNSRKVTRAGKVIDLTSKEYSVLEYLARNKGRVLTRSQIAEHVWN-YDFEGTSNIV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +I  LR+K+ +      + + R +GY +
Sbjct: 191 DVYIRYLRRKIDDGFPEKLIHTIRGVGYML 220


>gi|188590358|ref|YP_001920454.1| DNA-binding response regulator [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188500639|gb|ACD53775.1| DNA-binding response regulator [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 222

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
           IR HS +P+I ++   S    +     G DD + KP   + ++AR+ A+ RR    +SN+
Sbjct: 67  IRKHSNIPIIFVTSRDSNMDEIMSMTVGGDDFITKPYDSQILIARITAVLRRSYNNLSND 126

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E   + +     +   Q +   L + E +IL  L+ N+G  V +  + + ++   D  
Sbjct: 127 ILEYKGVGLNLGKGNVTYQNKTIDLTKNELKILHNLLQNKGSIVTRDDLMNYLWN-DDVF 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++N +  +I++LRKKL      D ++++R LGY I
Sbjct: 186 LDDNTLTVNINRLRKKLEEINIIDFIETRRGLGYII 221


>gi|159028847|emb|CAO90652.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 230

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 105/215 (48%), Gaps = 7/215 (3%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL +  Y+     DG   EG+N LE  ++        +  +   L+ +  +  E    + 
Sbjct: 19  ALSERQYVVDVARDGE--EGWNWLELGKYDLLVLDVTLPKLSGTLLCQRLRRAESHHPVS 76

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A++ VP++ ++   ++   +D  D+G DD V KP    E++AR+ A+ RR    S+    
Sbjct: 77  ANATVPVLLLTARDTVIDKIDGLDAGADDYVTKPFDLGELMARIRALIRRGSSTSSVLLS 136

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G +++     +    G++  L  +E  +LE L+ +  + ++++ I   ++ L D   EE
Sbjct: 137 WGGLQLNPSTHEASYNGQLLSLTPKEFALLELLVTHGRRVLSRSGIIERVWSLDDSPAEE 196

Query: 188 NVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
            V  SHI  LR KL++ LG   D +++   LGY +
Sbjct: 197 TVT-SHIRGLRHKLKS-LGAPEDFIETVHGLGYRL 229


>gi|153854281|ref|ZP_01995580.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814]
 gi|149753056|gb|EDM62987.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814]
          Length = 236

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 83  AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP++E  +L  L A+ G+   K Q+   ++G   EA + 
Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 201

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++ ++   F+ V + R +GY +
Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233


>gi|124268353|ref|YP_001022357.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124261128|gb|ABM96122.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 266

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+    S +P++ ++   +++  +   + G DD + KP    E++ARV  + RR +  
Sbjct: 100 LRRVREQGSTLPVLMLTARDAIEDRVHGLEMGADDYLVKPFALAELIARVKVLTRRHQAR 159

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G +R+  +     +  +   L  RE  +LEYL++  G  V K QI  AI G +
Sbjct: 160 QGSVLSMGGLRMDLEANRAWIGEQPLDLSAREWAVLEYLLSRVGHVVGKEQILQAISG-W 218

Query: 182 DEAVEENVVESHISKLRKKL 201
           D+A+ EN VE ++S+LR K+
Sbjct: 219 DDALSENAVEVYVSRLRPKI 238


>gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 225

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 7/165 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  S VP+I +S        +   + G DD V KP   RE++AR+ A+ RR + 
Sbjct: 62  EVCRQIRQTSSVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGQE 121

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++    E GP+R+  +     V G+   LP +E  +LE  + N G+ + + Q+   ++
Sbjct: 122 PDLAPPTLEAGPVRMDVERHVVTVDGQAQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+    G +P  + + R LGY  D
Sbjct: 182 G-SDYVGDTKTLDVHVKRLRAKIEPDPG-EPRYLVTVRGLGYKFD 224


>gi|257785036|ref|YP_003180253.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473543|gb|ACV51662.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 224

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  R+    +P++ ++    L   ++  D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFQTAELLARLRALGRRSS 120

Query: 121 -VSNNRAETGPIRVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               N    G + + S       E  G+   L  +E RILEY++ N G+ + + Q+   I
Sbjct: 121 SFQENVLCFGDLSLDSTTATLTCETSGQSVRLSEKELRILEYMIGNHGRIMTRDQLAIKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G F+   E N VE ++S  RKKL        + + R LGY +
Sbjct: 181 WG-FESDAEYNNVEVYMSFTRKKLAFIGSTVEIKAVRGLGYEL 222


>gi|242372014|ref|ZP_04817588.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W1]
 gi|242350283|gb|EES41884.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W1]
          Length = 234

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 8/199 (4%)

Query: 26  LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           L G  +L F E      +E+V      ++ KG    EL + ++   ++P+I ++   +L 
Sbjct: 42  LSGETALHFLE------KENVDIAIVDIMMKGMDGFELCQKLKEDYELPVIMLTARDALS 95

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQG 144
                F SG DD V KP   +E+L R+ A+ RR ++ + +  + G + +     +  V  
Sbjct: 96  DKERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQINAESELKLGNLTLNQSYMELSVDS 155

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +   LP +E +++  L++N      +  I   I+G FD   ++  V+ HI +LRK+L   
Sbjct: 156 KTVNLPNKEFQLIFLLVSNPKHIFTRDDIIEKIWG-FDYEGDDRTVDVHIKRLRKRLMQL 214

Query: 205 LGFDPVDSKRFLGYSIDWN 223
                + + R  GY +  N
Sbjct: 215 EASVSIHTVRGQGYMVSQN 233


>gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 228

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 18/151 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR   + P+I I+        +   + G DD + KP   +E+LARV A+ RR  
Sbjct: 65  IDVLKWIRKQGERPVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYS 124

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V N++ +          +   +V  DG+D         +P +E  +L YL +N+ K   +
Sbjct: 125 VDNDKNQVIKLSDLVIDSTSYKVIYDGKD-------IKMPPKEFELLYYLASNKNKVFTR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            Q+   ++G +D   +   V+ H+ +LR+KL
Sbjct: 178 EQLLCEVWG-YDYPGDSRTVDVHVKRLREKL 207


>gi|319891657|ref|YP_004148532.1| Two-component response regulator BceR [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161353|gb|ADV04896.1| Two-component response regulator BceR [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323465173|gb|ADX77326.1| two-component response regulator [Staphylococcus pseudintermedius
           ED99]
          Length = 226

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 9/143 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR HS VP+I IS   S    +   + G DD V KP H   ++A++ AI+RR+   N 
Sbjct: 64  RQIRQHSSVPIIFISSRDSPMDQVMSMEIGADDYVQKPFHMPVLIAKLQAIFRRVYQYNQ 123

Query: 125 RAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +     I       +S G   + Q  V  L + E  ILE L+ ++ + VA+  + +A++ 
Sbjct: 124 QERRTMIWQEAVVDWSKGTVTK-QDHVTYLSKTEMLILEVLLQHKNEIVAREDLMTALWD 182

Query: 180 LFDEA-VEENVVESHISKLRKKL 201
             DEA V +N +  ++++LRKKL
Sbjct: 183 --DEAFVSDNTLTVNVNRLRKKL 203


>gi|312868775|ref|ZP_07728967.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
 gi|311095761|gb|EFQ54013.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
          Length = 228

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR+ 
Sbjct: 61  IEVARRVRELKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRIS 120

Query: 121 VS--NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   NN+     +      +  + R      EV  L +RE  +L  LM N    +++ ++
Sbjct: 121 IEDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKEL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 181 LSKVWG-YDSKVETNVVDVYIRYLRNKIDRSGEKSYIQTVRGTGYVI 226


>gi|219683667|ref|YP_002470050.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621317|gb|ACL29474.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
          Length = 245

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 20/143 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147
           G DD V KP    E++AR+ AI RR   +  + E  PI       +  D  D    G+  
Sbjct: 100 GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVTRAGQTI 156

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E ++L YLM N G+ ++K QI   ++  +D   +  +VES+IS LRKK+ +    
Sbjct: 157 DLSSTEYKLLRYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDDVTVT 215

Query: 208 DP----------VDSKRFLGYSI 220
           D           +++KR +GY I
Sbjct: 216 DEDGSTHKVTPLIETKRGIGYMI 238


>gi|55820941|ref|YP_139383.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55736926|gb|AAV60568.1| response regulator (homolog to spaR Bsu & DvnR Cdi) [Streptococcus
           thermophilus LMG 18311]
          Length = 219

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L+    IR     P++ I+        +     G DD + KP   +E+ ARVAA  RR  
Sbjct: 60  LQFCHEIRNQVDCPILFITAKTQEADIVQGLSYGADDYICKPFGIKELQARVAAHLRREH 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +++   G  +     ++  ++ ++  L + E  I ++L  N+G+  +K QI++ +YG
Sbjct: 120 RERHHKLSLGEFQFDLSAQELYIENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D+     V E HI  +R KL+ ++G +P+++   +GY   W+
Sbjct: 180 YEDKGSPAAVAE-HIKNIRAKLK-EVGQNPIETVWGIGYK--WH 219


>gi|90425783|ref|YP_534153.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90107797|gb|ABD89834.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 221

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 14/157 (8%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A   +P++ ++   S +  +     G DD + KP    E+LAR+ A+ RR   ++  A T
Sbjct: 69  AKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRR---ASGHA-T 124

Query: 129 GPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             I V     DP  Q     G    L   E R L YLM +  K V+KT++   IYG  D+
Sbjct: 125 AEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYGQDDD 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + NV+E  +++LRK    K+G D + ++R  GY +
Sbjct: 185 R-DSNVIEVLVNRLRK----KIGADAIRTRRGQGYQL 216


>gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 241

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 10/158 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----- 126
           + P+I ++   + +  +     G DD + KP    E+LARV+A+ RR ++   +A     
Sbjct: 74  RTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQLDEGKATVESN 133

Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + +F +  +  + GE  PL  +E  +L YL+   G  V +  + + ++G FD
Sbjct: 134 EKVISAGELSIFPEKYEVILNGESVPLRPKEFEVLLYLVQRPGMVVTRDDLMNIVWG-FD 192

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               +  V+ H+S LRKKL        ++S R +GY +
Sbjct: 193 YIGGQRTVDVHVSSLRKKLELGQQSVQIESIRGVGYKL 230


>gi|291546162|emb|CBL19270.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 223

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R A   +P++ ++   +       F SG DD + KP++  E++ RV A+ RR +
Sbjct: 62  ELVRSLRDAGDSIPVLMVTAKDAFDDMRMGFLSGSDDYMVKPVNINELVLRVGALLRRAQ 121

Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + N R +  G   +  D        E   LP++E  +L  +++  GK   + Q+   I+G
Sbjct: 122 MINERKQRIGDTILECDSLTVSTSSESMVLPQKEFMLLYKMVSFPGKIFTRQQLMDDIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D A + + V+ HI +LR++ R+   F  V + R +GY +
Sbjct: 182 -YDSASDAHTVDVHIGRLRERFRDNPDFKIV-TIRGVGYKV 220


>gi|264676158|ref|YP_003276064.1| two component transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|299531179|ref|ZP_07044591.1| two component transcriptional regulator [Comamonas testosteroni
           S44]
 gi|262206670|gb|ACY30768.1| two component transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|298720882|gb|EFI61827.1| two component transcriptional regulator [Comamonas testosteroni
           S44]
          Length = 234

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 100/213 (46%), Gaps = 17/213 (7%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           +  ++++ GD    ++G      E W       DV  ++  L   G   L++ + +R+  
Sbjct: 24  QGAHVSVCGD---GVQGIAQAVGENW-------DVIILDRML-PNGFDGLQILQTLRSMG 72

Query: 72  -QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAET 128
            Q P++ +S   +    +    +G DD + KP    E+ AR+ A+ RR ++       + 
Sbjct: 73  KQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQIPAPTREMQV 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187
             +RV    R  E  G+   L  RE R+L +LM +  + V +T +  +++   FD   + 
Sbjct: 133 ADLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVWDYRFDP--QT 190

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           NV++ HIS+LR K+        + + R +GYS+
Sbjct: 191 NVIDVHISRLRSKVDKGFATPLIHTVRGVGYSL 223


>gi|326202201|ref|ZP_08192071.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987996|gb|EGD48822.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 217

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 4/156 (2%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +I   ++ P I +S   S+   +  F  G DD + KP    E+LARV A+ RR + + + 
Sbjct: 63  VIEQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRTASC 122

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E G +++          G+      +E  +LE L+ NR   +++ ++   ++G +D   
Sbjct: 123 FEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWG-YDFEG 181

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   V+ HI KLRKKL  +   D + +   LGY ++
Sbjct: 182 DTRTVDVHIQKLRKKLEWE---DRIKTVYKLGYRLE 214


>gi|304318103|ref|YP_003853248.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779605|gb|ADL70164.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 224

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +IDD   ++D  +     +G +++ F++ E  + L++  ++    +   ++  G   
Sbjct: 4   LIYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAE--DVLENFNKDKPDMLILDIMMPGMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + IR  S VP+I +S        +   + G DD + KP   RE++AR+ +++RR+K
Sbjct: 62  YELCKEIRKISDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVK 121

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +N      I +  D R     GE       E  ++++L  N  K   + Q+   ++
Sbjct: 122 MPKRSNEIRIKDIVIVPDERKVLYNGEEMSFTSMEFELIQFLAKNANKAFTREQLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
             +D   E   V+  + ++RKKL++
Sbjct: 182 K-YDSFTETRAVDDMVKRVRKKLQS 205


>gi|225016728|ref|ZP_03705920.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
 gi|224950532|gb|EEG31741.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
          Length = 230

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 21/199 (10%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67
           L K+GY  +   DG  +L  FN+L          + D   ++  L G  G +V    R I
Sbjct: 23  LEKEGYGVILSHDGEEALVKFNAL----------KPDFVLLDVMLPGLDGWQVC---REI 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S VP+I ++        +   + G DD V KP   +EI+AR+ AI+RRL  SN +AE
Sbjct: 70  RKKSNVPVIMLTAKGETFDKVLGLELGADDYVVKPFDTKEIIARIKAIHRRLGQSNQQAE 129

Query: 128 TGPI----RVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              +     V +  R + +V G+V   P +E  +L +L +   +   + Q+   ++G F+
Sbjct: 130 VKEVVYDKLVVNMTRYELKVDGKVVDTPPKELELLFHLASTPNRVYTRDQLLDEVWG-FE 188

Query: 183 EAVEENVVESHISKLRKKL 201
              +   ++ H+ +LR+KL
Sbjct: 189 YYGDSRTIDVHVKRLREKL 207


>gi|55822861|ref|YP_141302.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|116627727|ref|YP_820346.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|55738846|gb|AAV62487.1| response regulator (homolog to spaR Bsu & DvnR Cdi) [Streptococcus
           thermophilus CNRZ1066]
 gi|116101004|gb|ABJ66150.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
 gi|312278275|gb|ADQ62932.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus ND03]
          Length = 219

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L+    IR     P++ I+        +     G DD + KP   +E+ ARVAA  RR  
Sbjct: 60  LQFCHEIRNQVDCPILFITAKTQEADIVQGLSYGADDYICKPFGVKELQARVAAHLRREH 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +++   G  +     ++  ++ ++  L + E  I ++L  N+G+  +K QI++ +YG
Sbjct: 120 RERHHKLSLGEFQFDLSAQELYIENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D+     V E HI  +R KL+ ++G +P+++   +GY   W+
Sbjct: 180 YEDKGSPAAVAE-HIKNIRAKLK-EVGQNPIETVWGIGYK--WH 219


>gi|322804538|emb|CBZ02089.1| two-component response regulator YvcP [Clostridium botulinum H04402
           065]
          Length = 258

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR HS+VP+I IS   S    +   ++G DD + KP  +  +LA++  + RR+  S  + 
Sbjct: 93  IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 152

Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +T     G + ++++    E +G    L + E  +L YL+ N  K V++  +   ++   
Sbjct: 153 DTDFLKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLLKNINKIVSRDTLLEILWSDT 212

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  +++N +  ++++LRK+L      + +++KR  GY +
Sbjct: 213 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 250


>gi|71906215|ref|YP_283802.1| two component transcriptional regulator [Dechloromonas aromatica
           RCB]
 gi|71845836|gb|AAZ45332.1| two component transcriptional regulator, winged helix family
           [Dechloromonas aromatica RCB]
          Length = 227

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 3/142 (2%)

Query: 62  ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           E+ + +R H   +VP++  +     +   D    G DD V KPI + E LARV ++ RR 
Sbjct: 61  EVLKQVREHCGWEVPVLFCTARTDEEAAADILRLGADDYVPKPIRYMEFLARVQSLLRRR 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  ++    G I +  +GR   + G    L +RE  +   L+ N G+ +++ ++ ++++ 
Sbjct: 121 KPRSSTLRFGSIEIDLEGRRICLGGLDVELTQREFELAVILLRNVGRVLSREELLTSVWS 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             +  V+   V++H S+LRKKL
Sbjct: 181 K-EAGVDTRTVDTHASRLRKKL 201


>gi|296117440|ref|ZP_06836028.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295976042|gb|EFG82832.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 226

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 18/194 (9%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95
           +L  S + D+  ++  L G G   L L   IRA +   P++ +S    +   +    +G 
Sbjct: 38  FLAVSEKFDLIILDRMLPG-GIDGLRLLETIRAQNNATPVLLLSALADVDDRVQGLKAGG 96

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR--VFSD------GRDPEVQGEVF 147
           DD V KP    E+LARV A+ RR      R E  P    V +D       R     G+  
Sbjct: 97  DDYVTKPFAFSELLARVEALGRR-----GRTEQAPQTKLVVADLEIDLLSRTVRRAGQKI 151

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG 206
            L  RE R+LEYL  + G+ V +T +   ++   FD   + NV++ H+S+LR+K+    G
Sbjct: 152 DLQPREFRLLEYLTRHAGQVVTRTMLLEGVWDYHFDP--QTNVIDVHVSRLRQKVDKPFG 209

Query: 207 FDPVDSKRFLGYSI 220
              + + R  GY +
Sbjct: 210 MPLIHTIRNAGYML 223


>gi|118589317|ref|ZP_01546723.1| phosphate regulon transcriptional regulatory protein [Stappia
           aggregata IAM 12614]
 gi|118438017|gb|EAV44652.1| phosphate regulon transcriptional regulatory protein [Stappia
           aggregata IAM 12614]
          Length = 233

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA     ++P+I ++        +    +G DD V KP    E++ARV AI R
Sbjct: 61  IELCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILR 120

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   +V +    +G I +  +        +   L   E R+LE+LM + G+  ++ Q+  
Sbjct: 121 RASPEVVSTMLRSGDIELDRETHRVRRNAKEIHLGPTEFRLLEFLMTSPGRVFSREQLLD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK L      DP+ + R  GY+ +
Sbjct: 181 GVWG-HDVYVDERTVDVHVGRLRKALNKGKAKDPIRTVRGAGYAFN 225


>gi|83945597|ref|ZP_00957943.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850963|gb|EAP88822.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 228

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD+G DD + KP H  E+LAR+ A+ RR    S++    G + + + G    +  ++  L
Sbjct: 91  FDAGADDYLTKPFHPEELLARLRALTRRAAGHSSSTLMCGDLSLDTRGSRVFLGDQLIKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM +R + +++T++   IY   FD   + N +E  + +LRK    K+G +
Sbjct: 151 TSHEFRMLSYLMHHRDRVISRTELVEHIYDQDFDR--DSNTIEVFVGRLRK----KIGSN 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY +
Sbjct: 205 RIETVRGLGYRL 216


>gi|127511517|ref|YP_001092714.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126636812|gb|ABO22455.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 224

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 19/172 (11%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++LE  R        P+I ++        ++ F++G DD + KP H +E+LAR+ A
Sbjct: 57  GNGLQLLETWR--NQGIDTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHSQELLARIHA 114

Query: 115 IYRRLKVSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           +  R     N     P +  S          +   V  + F L   E R+L+  + +  K
Sbjct: 115 LINRAHGKTN----SPTKELSFEGVTLDESQQSVTVGEQQFELTAMEFRLLKIFLMSPKK 170

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++K Q+   +Y  FD+  E NVVE +++ LRK    KLG   ++++R  GY
Sbjct: 171 LLSKAQLTDKLYQ-FDDEKESNVVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|94314311|ref|YP_587520.1| winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93358163|gb|ABF12251.1| two component transcriptional regulator, winged helix family ygiX
           [Cupriavidus metallidurans CH34]
          Length = 219

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 12/169 (7%)

Query: 55  GKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+G   L+  R +RA  S VP+I ++    +   +   ++G DD + KP    E+ ARV+
Sbjct: 57  GRG---LDFLRELRASGSNVPIIILTALDQVSNRIAGLNAGADDYLVKPFDLSELSARVS 113

Query: 114 AIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR   + N     G +R+ + G    ++GE    L   E  +LE L+ + G  V++ 
Sbjct: 114 AVARRYAGNPNPLVNLGDLRIDTAGHSV-MRGETRVDLTASEWALLEALIQHPGMIVSRA 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   +Y  F+E V  N +E H+S+LRK    KLG D +++ R LGY +
Sbjct: 173 RLEERLYS-FNEEVGSNTIEVHMSRLRK----KLGADVIETLRGLGYRL 216


>gi|317501849|ref|ZP_07960034.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088638|ref|ZP_08337549.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896739|gb|EFV18825.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407595|gb|EGG87095.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 79/145 (54%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR  S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  QVCREIRETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTLG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  E G I++       ++  ++  L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 NTAGDVIEAGDIKIDKAAHIVKINDKMIDLSYKEFELLSYFVENQGIALSREKILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL ++
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGDR 208


>gi|323528863|ref|YP_004231015.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323385865|gb|ADX57955.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 225

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +     P++ ++   S+   ++   +G DD + KP   RE++AR+    RR   S
Sbjct: 63  LRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELVARIKVAIRRQSPS 122

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    G +    D R   ++G    +  RER +LE L+   GK V K  +  AI+ L 
Sbjct: 123 KASEVVCGDLAFDIDTRQFTLKGMPLNVTPRERTVLETLILRLGKTVTKPALVDAIFTLA 182

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE   E+ VE +IS+LRKKL
Sbjct: 183 DEP-SEDAVEIYISRLRKKL 201


>gi|229195595|ref|ZP_04322361.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228587844|gb|EEK45896.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 218

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  EV GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|160901586|ref|YP_001567167.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359230|gb|ABX30844.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 224

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR + S + +I I+    L++ +    +  DD V KP    EILAR+ A+ +R+ 
Sbjct: 62  EVAEAIRDYDSDIGIIMITAKGELESKVKGLKNA-DDYVVKPFEIEEILARIEALLKRMG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    + G I ++    +  V  +   L   E  IL+ L  N+   V+K +I   I+G 
Sbjct: 121 KTKELIKVGDIEIYPQNMEVLVNKKNVHLSLTEFNILKLLAINKNIVVSKEKILEEIWGY 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +DE    N+VE +I+ LRKKL++      +++ R +GY I
Sbjct: 181 YDEE-NNNLVEVYINYLRKKLKD--STQNIETVRGVGYVI 217


>gi|125717738|ref|YP_001034871.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|125497655|gb|ABN44321.1| Two-component system transcriptional regulator (CheY domain and
           HTH-like DNA-binding domain), putative [Streptococcus
           sanguinis SK36]
 gi|324990911|gb|EGC22846.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|325694205|gb|EGD36121.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
 gi|328945951|gb|EGG40098.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
 gi|332359572|gb|EGJ37390.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332361525|gb|EGJ39329.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
 gi|332362715|gb|EGJ40512.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 218

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  SQ+P++ ++      T L  F+  + D V KP     ++ R+  I RR  
Sbjct: 61  LEVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++  A  G + V  D      QGE  PL ++E  IL+ L   +G  V + Q+ + I+G 
Sbjct: 121 VASEIA-VGDLTVSIDDCTVYWQGEKMPLTKKEYEILQTLAKRKGHLVTRDQLMNTIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  ++  V+++HI  +RKK+       P+ +   +GY +
Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGV----PLKTITGMGYQL 213


>gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 22/198 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L K+GY  L   DG +         + W Q   R D+  ++  +    G  V    RIIR
Sbjct: 24  LEKEGYRVLTATDGEA-------GLKVWRQE--RPDLVVLDLMMPKLSGNDVC---RIIR 71

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             S+ P+I ++    L   +   + G DD V KP   RE++AR+ A+ RR   + +R   
Sbjct: 72  QESETPVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVLRR---TEHRTFA 128

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G + V  + R  ++ G+V  L   E  +L+ + AN G+  ++++I   + G   E
Sbjct: 129 PVLRVGELTVDVERRQADIGGKVIELTTTEFDLLKLMAANPGRVFSRSEILDRLQGDTYE 188

Query: 184 AVEENVVESHISKLRKKL 201
             E   ++SHI  LR+K+
Sbjct: 189 GYERT-IDSHIKNLRRKI 205


>gi|327459875|gb|EGF06215.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
          Length = 218

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  SQ+P++ ++      T L  F+  + D V KP     ++ R+  I RR  
Sbjct: 61  LEVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++  A  G + V  D      QGE  PL ++E  IL+ L   +G  V + Q+ + I+G 
Sbjct: 121 VASEIA-VGNLTVSIDDCTVYWQGEKMPLTKKEYEILQTLAKRKGHLVTRDQLMNTIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  ++  V+++HI  +RKK+       P+ +   +GY +
Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGV----PLKTITGMGYQL 213


>gi|326801362|ref|YP_004319181.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326552126|gb|ADZ80511.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 231

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 26/224 (11%)

Query: 8   RALVKDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLEL 63
           R L  DGY   IA  G+ G+ +   N+             D+  ++  L G  G +V +L
Sbjct: 20  RGLSADGYDVRIASDGELGLDMIYHNAF------------DLIVLDVMLPGISGIEVCQL 67

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R  + ++ VP++ ++   +    +   DSG DD + KP    E+ AR+  + RR   +N
Sbjct: 68  LR--KENNPVPILMLTALSATNNVVTGLDSGADDYMVKPFKFEELKARIRTLVRRANGTN 125

Query: 124 NRAE--TGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +  IR+       D R     G+   L   E R+LE++M N+ K + + +I   
Sbjct: 126 GQQNPASSTIRIMDLVLDMDARIATRGGKEIALTATEYRLLEFMMKNKNKVLTRIEILEH 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ + +  +  NVV+ +++ LRKK+        + +   +GYSI
Sbjct: 186 VWDI-NFNMGTNVVDVYVNYLRKKVDKGFDVKLIHTMIGVGYSI 228


>gi|324993173|gb|EGC25093.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324995524|gb|EGC27436.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|325696805|gb|EGD38693.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327461443|gb|EGF07774.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327473748|gb|EGF19166.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
 gi|327489298|gb|EGF21091.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|332366300|gb|EGJ44052.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 218

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  SQ+P++ ++      T L  F+  + D V KP     ++ R+  I RR  
Sbjct: 61  LEVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++  A  G + V  D      QGE  PL ++E  IL+ L   +G  V + Q+ + I+G 
Sbjct: 121 VASEIA-VGDLTVSIDDCTVYWQGEKMPLTKKEYEILQTLAKRKGHLVTRDQLMNTIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  ++  V+++HI  +RKK+       P+ +   +GY +
Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGV----PLKTITGMGYQL 213


>gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
 gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
          Length = 231

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 27/224 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+K GY  +  +DG     F +L   E      + D+  ++  +   G   LE+ R IR 
Sbjct: 23  LLKKGYEVVQAEDG-----FQALALLE----KEKPDLILLDVEM--PGMDGLEVCRRIRL 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
            + +P++ +S    L   +   ++G DD + KP    E+ AR+ AI RR    NN  +  
Sbjct: 72  KTTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILRRNGWRNNVEDQL 131

Query: 130 PI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            I       +  D R+  ++G    L  +E ++L  L     +     Q++  ++G + E
Sbjct: 132 TILKYKDLHIHVDARELYLEGAQVKLYHKEFQLLLLLAQTPNRVWTAEQLYDQVWGYYSE 191

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDW 222
             +   V+ HISKLRKK+      DP     + + R  GY   W
Sbjct: 192 G-DVQTVKVHISKLRKKIEK----DPANPEFIQTVRGFGYKFIW 230


>gi|168182114|ref|ZP_02616778.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182674615|gb|EDT86576.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 232

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR HS+VP+I IS   S    +   ++G DD + KP  +  +LA++  + RR+  S  + 
Sbjct: 67  IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 126

Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +T     G + ++++    E +G    L + E  +L YL+ N  K V++  +   ++   
Sbjct: 127 DTDFLKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLLKNINKIVSRDTLLEILWSDT 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  +++N +  ++++LRK+L      + +++KR  GY +
Sbjct: 187 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 224


>gi|146294933|ref|YP_001185357.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145566623|gb|ABP77558.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 231

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 8/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129
           P++ ++   S Q  ++  D+G DD + KP H +E++AR+ A+ RR   S  +A      G
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRR---SAGKASPLVYNG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  + +   +     E+  L   E ++ E+LM ++G+  +KT +   IY   D  ++ NV
Sbjct: 131 PFSLNTSSLEIRKGDELINLSGSEYKLFEFLMLHQGEVKSKTVLTEHIYDQ-DFDLDSNV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E  I +LRKKL     ++ +++ R  GY +
Sbjct: 190 IEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|114331551|ref|YP_747773.1| two component transcriptional regulator, winged helix family
           protein [Nitrosomonas eutropha C91]
 gi|114308565|gb|ABI59808.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas eutropha C91]
          Length = 223

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 4/151 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130
           ++P++ ++   S++ T+   D G DD + KP    E+ AR+ A+ RR   V++       
Sbjct: 72  RLPVLVLTARGSMEDTIAGLDVGADDYMVKPFRLPELAARIRALIRRAHSVASTELRHDQ 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + +      + G+   L  RE  ILE L+    K V+K ++  ++ G +D+ +  N +
Sbjct: 132 LILNTGSHTATLHGQPLFLTMREWTILEILLMASPKVVSKDKLLQSLAG-WDKNITPNAI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E H+S+LR K+   LG   + + R +GY ID
Sbjct: 191 EVHVSRLRAKI--ALGGIGIRTVRGIGYRID 219


>gi|329115641|ref|ZP_08244363.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001]
 gi|326695069|gb|EGE46788.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001]
          Length = 225

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 25/222 (11%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + G++    +DG S  G +       L +S + DV  ++  L G  E +  L  + 
Sbjct: 18  KGLAEAGHLVEQAEDGKS--GLS-------LAASEKFDVIILDRMLPGGVEGLHILQTLR 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
             ++  P++ +S    +   +    +G DD V KP    E+ AR+ A+ RR     NR E
Sbjct: 69  NQNNLTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRR-----NRNE 123

Query: 128 TGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             P    + G        R+    G+   L  RE R+LE+LM + G+ V +T +   ++ 
Sbjct: 124 AQPQTRLTIGDLEIDLLSRNVRRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEGVWD 183

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD   + NV++ HIS+LR+K+        V + R  GY +
Sbjct: 184 YHFDP--QTNVIDVHISRLRQKIDRPFHHPLVHTIRNAGYML 223


>gi|229138085|ref|ZP_04266683.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228645430|gb|EEL01664.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 218

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  EV GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|205372140|ref|ZP_03224955.1| DNA-binding response regulator [Bacillus coahuilensis m4-4]
          Length = 267

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 20/172 (11%)

Query: 41  SAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           S R D+  I+  L G  GE +L   +I+   S VP+I IS     Q+ +    +G DD +
Sbjct: 83  SERWDMVLIDLMLPGLSGEDIL---KIVTKESDVPIIIISAKLETQSKIAALRAGADDYI 139

Query: 100 NKPIHHREILARVAAIYRRLK----VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
            KP    E+ AR+ +  RR +    VS  N      I +  D +   V G V  L  RE 
Sbjct: 140 TKPFDIEEVSARIDSCLRRYRDIPSVSITNLMSNKDIVLDPDAKIVTVNGNVLKLTAREY 199

Query: 155 RILEYLMANRGKRVAKTQIFSAI-----YGLFDEAVEENVVESHISKLRKKL 201
            IL  LM++  K   K  +F ++     YG      ++N +  H+S +R KL
Sbjct: 200 EILLLLMSSPNKVFTKANLFESVWNEPFYG------DDNTINVHLSNIRNKL 245


>gi|209544301|ref|YP_002276530.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531978|gb|ACI51915.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 226

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 8/189 (4%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95
           +L  S   D+  ++  L G G   L L   IRA +   P++ +S    +   +    +G 
Sbjct: 38  FLAVSENFDLIILDRMLPG-GIDGLRLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGG 96

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           DD V KP    E+LARV A+ RR +  N    R     + +    R     G+   L  R
Sbjct: 97  DDYVTKPFAFSELLARVEALSRRGRSDNAPLTRLNVADLEIDLLSRSVRRGGQRIDLQPR 156

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           E R+LEYLM + G+ V +T +   ++   FD   + NV++ H+S+LR+K+        + 
Sbjct: 157 EFRLLEYLMRHAGQVVTRTMLLEGVWDYHFDP--QTNVIDVHVSRLRQKVDKPFDTPLIH 214

Query: 212 SKRFLGYSI 220
           + R  GY +
Sbjct: 215 TIRNAGYML 223


>gi|153815072|ref|ZP_01967740.1| hypothetical protein RUMTOR_01289 [Ruminococcus torques ATCC 27756]
 gi|145847640|gb|EDK24558.1| hypothetical protein RUMTOR_01289 [Ruminococcus torques ATCC 27756]
          Length = 211

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 79/145 (54%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR  S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 51  QVCREIRETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTLG 110

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  E G I++       ++  ++  L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 111 NTAGDVIEAGDIKIDKAAHIVKINDKMIDLSYKEFELLSYFVENQGIALSREKILNNVWN 170

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL ++
Sbjct: 171 -YDYFGDARTIDTHVKKLRSKLGDR 194


>gi|91786148|ref|YP_547100.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695373|gb|ABE42202.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 226

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 86/164 (52%), Gaps = 4/164 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L + +RA   +P++ +S +      +   + G DD ++KP   RE+LARV ++ RR +
Sbjct: 63  LDLCKELRAAGSMPVLILSAHGEEIDRVLGLELGADDYLSKPFSPRELLARVRSLLRRAR 122

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +      GP  + + G+   + G    L RRE  +L  L+ +RG+  ++ ++  A++
Sbjct: 123 MPPAAPVPANGPFEIDAAGQRMRLHGRPLNLTRREFGLLADLLHHRGRIRSRDELLGAVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G  D    +  V++HI  LR KL+      D + + R +GY ++
Sbjct: 183 G-ADSDSTDRTVDTHIKTLRAKLQEAAPERDYIVTHRGMGYCLE 225


>gi|332296825|ref|YP_004438747.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332179928|gb|AEE15616.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 238

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 16/166 (9%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           RA   VP+I +S    L   +     G DD V KP    E++AR+ A+ RR K      +
Sbjct: 69  RAGGSVPVIFVSAKSELTDKVSGLRLGADDYVTKPYDFPELIARIEALLRRTKTQTETED 128

Query: 128 T--------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +              GP R+          G+  PL   E ++L YL+ +RG+ V    +
Sbjct: 129 SPAELDYTDENDYVFGPFRLVFKKVQLLKDGKPVPLSLMECKLLMYLVVHRGELVKTDTL 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
              ++G ++ A     + +HIS LRKKL+  ++    +++ R +GY
Sbjct: 189 MEYVWG-YETAAASGTLYTHISWLRKKLKTPQVPGGYIETVRNIGY 233


>gi|326799960|ref|YP_004317779.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326550724|gb|ADZ79109.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 225

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 4/168 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++LE  ++ ++     +I IS   SL   L   + G DD + KP H  E+ AR+ A
Sbjct: 57  GSGLQLLE--QLKQSEKSENVIIISAKDSLDDKLKGLELGADDYLTKPFHIAELNARIKA 114

Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR K+      ET  + +  + R   V GE   L R+E  IL Y + N  + V K+ +
Sbjct: 115 VLRRKKLDGKHTIETRNVVLDLNERQLLVNGEAVALNRKEFDILNYFLLNTNRLVTKSAL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G   D+A   + +   I  LRKKL+       ++S   +GY +
Sbjct: 175 AEHVWGDNIDQADNLDFIYYQIKNLRKKLQQANAAIEIESVYGVGYKM 222


>gi|294787493|ref|ZP_06752746.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315226931|ref|ZP_07868719.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
 gi|294484849|gb|EFG32484.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315121063|gb|EFT84195.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
          Length = 245

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +   + P++ ++     Q  +     G DD V KP    E++AR+ AI RR   +  
Sbjct: 74  RIRQQGIEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQE 130

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + E  PI       +  D  D    G++  L   E ++L YLM N G+ ++K QI   ++
Sbjct: 131 QVEDDPIIRVADLEINEDSHDVTRHGQLVELSPTEYKLLRYLMDNEGRVLSKAQILDHVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKL-----RNKLGFDP-----VDSKRFLGYSI 220
             +D   +  +VES+IS LRKK+     R++ G +      + +KR +GY I
Sbjct: 191 Q-YDWGGDAAIVESYISYLRKKIDGITYRDEDGTEHKVTPIIQTKRGIGYII 241


>gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115]
          Length = 234

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S  P+I ++    +Q  ++  DSG DD + KP    E+LARV A  RR+ 
Sbjct: 73  LEVARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRV- 131

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              N A TG +RV       DGR+    G    L  +E  +LE L  N GK  ++ +I  
Sbjct: 132 ---NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NVV+ +I  LR+KL        + + R +GY +
Sbjct: 189 KVWPEYTGG--SNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 231


>gi|254490732|ref|ZP_05103915.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463904|gb|EEF80170.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 219

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 31/219 (14%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRII 67
           AL K G+     +DG+  E    +E           D+  ++  L G+ G +VL+  R  
Sbjct: 16  ALNKSGFATDLSEDGIDGEAMGDIE---------PYDLIVLDLGLPGQSGLEVLKNWR-- 64

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           +  +  P+I ++   + +  +  F +G DD + KP    E+L R+ A+ RR       + 
Sbjct: 65  QRENATPVIILTARDAWEDKVLGFKAGADDYLAKPFQTEELLVRINAVLRR------SSG 118

Query: 128 TGPIRVFSDG--RDPEVQ------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             P  + SDG   D   Q      GE   L   E ++L Y M +RGK ++KT +   +Y 
Sbjct: 119 LSPGTLNSDGLILDESKQSVTLKSGENLALTGTEFKLLRYFMLHRGKLLSKTTLTEHVYQ 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L D   + NV+E ++++LR+    KLG D + ++R  GY
Sbjct: 179 L-DSDKDSNVMEVYVNRLRQ----KLGPDLIHTRRGQGY 212


>gi|86739186|ref|YP_479586.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566048|gb|ABD09857.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 226

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 8/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRTLRTRSTVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V +   E GP+R+  +     V G    LP +E  +LE  + N G+ + + Q+   +
Sbjct: 122 NEEVGDATLEAGPVRMDVERHVVTVDGTTVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+ ++ G +P  + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEHEPG-NPRHLVTVRGLGYKFE 225


>gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 28/224 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+ A       ++ G      EE+ ++ A  D+  ++  L G      ++ + +R 
Sbjct: 21  LRKEGFTA-------AVAGTGQAALEEFDRNGA--DIVLLDLMLPGMSGT--DVCKQLRQ 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127
            S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR     +  E  
Sbjct: 70  RSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEPGSEGELA 129

Query: 128 -----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 GP+R+  +     V G    LP +E  +LEYL+ N G+ + + Q+   ++G  D
Sbjct: 130 PLVLSAGPVRMDVERHVVTVDGADVSLPLKEFDLLEYLLRNVGRVLTRGQLIDRVWG-AD 188

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              +   ++ H+    K+LR+K+  DP   +     R LGY  +
Sbjct: 189 YVGDTKTLDVHV----KRLRSKIEPDPGSPRHLVTVRGLGYKFE 228


>gi|319764284|ref|YP_004128221.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330826433|ref|YP_004389736.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317118845|gb|ADV01334.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329311805|gb|AEB86220.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 222

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + R +RA   + P++  +    +   ++  D+G DD V KP    E+LAR+ A+ RR 
Sbjct: 64  LAVLRSLRARKDRTPVLIATARDGVAQRVEGLDAGADDYVLKPYDAGELLARIRALLRR- 122

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++ RAE       + +    R+  VQG    L  RE  +LE L+A  G  +++ QI  
Sbjct: 123 --ASGRAEPVYEHQGVTLNPGTREATVQGRPVVLSAREWAVLEPLIARPGMVLSRQQIED 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG  DE V  N VE ++  LRK    KLG   V + R LGY +
Sbjct: 181 KLYGWGDE-VSSNAVEVYVHGLRK----KLGAHIVLNVRGLGYMV 220


>gi|295106656|emb|CBL04199.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 229

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 7/170 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++L + R   A   +P++ ++   +   T+   D+G DD + KP    E+++RV A+ 
Sbjct: 58  GLEILHMLREDPATKHLPVMMLTAKGTEFDTVSGLDAGADDYLAKPFGMMELVSRVNALM 117

Query: 117 RR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR       +++    GPI +     D  V GE   L  +E  +L  LM N G  +++ Q
Sbjct: 118 RRAAAPAVAADDEFSCGPIALTVSSHDVSVDGENVALTLKEFDLLRTLMQNEGHVLSRRQ 177

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDP-VDSKRFLGYSI 220
           +   ++G+     E   V+ HI  LR+KL   + G D  + + R +GY +
Sbjct: 178 LLEDVWGM-TYVGETRTVDVHIQTLRQKLAAAVEGADAYIQTVRGVGYCV 226


>gi|229012775|ref|ZP_04169944.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228748456|gb|EEL98312.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 14/163 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 119 LKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + VS  N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   ++  V++HI    KKLRNKLG    D  R +G  I
Sbjct: 184 WG-YDYYGDDRTVDTHI----KKLRNKLG----DKARHIGTVI 217


>gi|229015017|ref|ZP_04172094.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229021448|ref|ZP_04178059.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229024498|ref|ZP_04180945.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228736786|gb|EEL87334.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228739853|gb|EEL90239.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|228746284|gb|EEL96210.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 226

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 5/165 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  +++R   + P++ +S   S    +  F  G DD + KP   +E++ARV A  RR K
Sbjct: 61  FEFCKVVREQIKCPILFLSAKHSEIDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREK 120

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N+   G + +     D  + G    +  +E +ILE L  N G+  +K QI+  
Sbjct: 121 RERVNLQNQRFLGNLTINYSQHDVFIDGVKIDVTSKEFKILELLTVNLGQIFSKEQIYEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+GL D   + N +  HI+ LR KL   +    + +   +GY ++
Sbjct: 181 IWGL-DAVGDLNTIIVHINNLRAKLSLGMSTYHIKTVWGVGYKLE 224


>gi|221200480|ref|ZP_03573522.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221206160|ref|ZP_03579174.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221174172|gb|EEE06605.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221179821|gb|EEE12226.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 220

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R    +P I I+    ++  +   DSG DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LASLRRRDETLPTIIITARDGVRDRIAGLDSGADDYLVKPFELEELLARIRAVNRR---H 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             RA+T    GP+R+        +  +  PL  +E  +L  LM   G  +++ Q    +Y
Sbjct: 120 AGRAQTTLAIGPLRLDPVKHRVWLHDDEVPLSPKEFVLLHELMREPGAVISREQFEERLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + E +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216


>gi|302386537|ref|YP_003822359.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197165|gb|ADL04736.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 224

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 5/183 (2%)

Query: 41  SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           S   D+  ++  L G+ G  V++  R   AH Q P++ ++    +   +   D G DD +
Sbjct: 42  SGEYDIIILDVMLPGENGFHVVQKLR--EAHIQTPVLMLTARDDIHDKVTGLDKGADDYM 99

Query: 100 NKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
            KP    E+LAR+ A+ RR  +V     + G   +     D     +   L  +E  +L+
Sbjct: 100 TKPFVPEELLARIRALSRRQGEVIVEEMKYGDFILNLSANDLCCGSKSIHLGYKEFEVLK 159

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            LM N GK ++K  + S ++G  D   E+N VE++IS LRKKL+       + + R +GY
Sbjct: 160 ILMNNSGKIISKEILISKVWG-SDSDAEDNNVEAYISFLRKKLKFIGSKVEIGTVRKVGY 218

Query: 219 SID 221
            ++
Sbjct: 219 RLE 221


>gi|153813051|ref|ZP_01965719.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174]
 gi|160894161|ref|ZP_02074939.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50]
 gi|149830853|gb|EDM85943.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174]
 gi|156864194|gb|EDO57625.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50]
          Length = 236

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 83  AGYQIPVLMITAKGSFDDMRQGFFSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP+++  +L  L A+ G+   K Q+   ++G   EA + 
Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKQFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 201

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI +LR++ ++   F+ V + R +GY +
Sbjct: 202 HTIEVHIGRLRERFKDNPDFEIV-TMRGIGYKV 233


>gi|163941207|ref|YP_001646091.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863404|gb|ABY44463.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 14/163 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 119 LKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + VS  N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   ++  V++HI    KKLRNKLG    D  R +G  I
Sbjct: 184 WG-YDYYGDDRTVDTHI----KKLRNKLG----DKARHIGTVI 217


>gi|300785437|ref|YP_003765728.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794951|gb|ADJ45326.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 7/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S VP++ ++   + +  L  FD G DD V KP   RE++ARV ++ RR  
Sbjct: 62  LEVVRALRRESDVPVLLVTARSTAEDKLAGFDLGADDYVTKPYDPRELMARVRSLLRRAG 121

Query: 121 VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S +R    P+RV +   D       V          E RILE LMA  G+ +++ Q+ +
Sbjct: 122 PSGSRP-VLPLRVGALLLDQIRHTVRVHDRPIDCTPAEFRILEALMAEPGRVLSRRQLLN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
             +G  D  V E   ++H+  LR+K+
Sbjct: 181 QAHGQ-DTFVTERTADAHLKNLRRKI 205


>gi|229062698|ref|ZP_04200007.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|229094149|ref|ZP_04225229.1| Two-component response regulator vanRB [Bacillus cereus Rock3-42]
 gi|228689252|gb|EEL43073.1| Two-component response regulator vanRB [Bacillus cereus Rock3-42]
 gi|228716668|gb|EEL68365.1| Two-component response regulator vanRB [Bacillus cereus AH603]
          Length = 198

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR    
Sbjct: 58  ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 117

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              A    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++
Sbjct: 118 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKK 200
           G ++   +  V+++HI  LRK 
Sbjct: 178 G-YEHYGDVRVIDTHIKNLRKN 198


>gi|210632475|ref|ZP_03297403.1| hypothetical protein COLSTE_01305 [Collinsella stercoris DSM 13279]
 gi|210159570|gb|EEA90541.1| hypothetical protein COLSTE_01305 [Collinsella stercoris DSM 13279]
          Length = 226

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 19/217 (8%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L K GY    G D V+  GF+ L     + +S   DV  ++  L    G  VL   R +R
Sbjct: 20  LRKSGY----GAD-VAQTGFDGL----GMATSGAYDVVLLDIMLPDMSGMDVL---RELR 67

Query: 69  AHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNR 125
           A  + VP+I ++    +   +   D+G DD ++KP H  E+LAR+ A+ RR     + N 
Sbjct: 68  AAGETVPVILLTARQGVGDRVAGLDAGADDYLSKPFHASELLARIRAVTRRPATYRAGNA 127

Query: 126 AETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            E   +R+    R    +G  E   L  RE ++LE LM   G  VA++ + + ++G    
Sbjct: 128 IEACGMRLDGVERTVACKGSSEALELTERESQLLEALMRRAGSAVARSALMARVWG-PTV 186

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +EN +E  +  LR KL        +++ R +GY +
Sbjct: 187 CADENRLEVLVHALRDKLEACGAPARIETVRGVGYRL 223


>gi|167567937|ref|ZP_02360853.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
          Length = 232

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 3/142 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I + H+ VP++ +++       +   ++G DD V KP   +E +ARV A+YRR +  
Sbjct: 63  LAWIRKNHATVPVLILTNAVLESDVVTALEAGADDYVIKPPREQEFVARVKALYRRSREI 122

Query: 123 NNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + R    E GP ++ +  +   +  E  PL  +E  I+E L  N G+ V + ++ S ++G
Sbjct: 123 HTRPELMEIGPYKIQTIEKTVYLHREKIPLSPKEYEIIELLAQNLGQVVPRDKMVSLVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKL 201
              +      +++HI ++R+KL
Sbjct: 183 RPPDEASFRTLDTHIYRIRQKL 204


>gi|331013564|gb|EGH93620.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 164

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 2/146 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132
           P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR      +    GP+ 
Sbjct: 13  PILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSGFIQSTITAGPLL 72

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  + +   +  +   L   E RILEYLM +  + V K ++   +Y   DE  + NV+E 
Sbjct: 73  LDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYPDDDER-DPNVIEV 131

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218
            + +LR+KL + + F P+++ R +GY
Sbjct: 132 LVGRLRRKLDSNVAFKPIETVRGMGY 157


>gi|328555084|gb|AEB25576.1| two-component response regulator SpaR [Bacillus amyloliquefaciens
           TA208]
          Length = 220

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +EL R IR     P++ ++     ++ +    +G DD + KP   +E++ARV A  
Sbjct: 56  GTDGIELCRRIRPLVDSPILFLTAKSDEESIVKGLMTGADDYITKPFGVKELMARVNAHV 115

Query: 117 RRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR    K    R  +G +  F D ++  +     PL + E +I+E+L  ++ +  ++ QI
Sbjct: 116 RRESREKRQTKRLISGFMFDF-DNKEVWIDDRKLPLTKNEYKIVEFLAQHKNRTFSREQI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  +YGL  +A+   + E  I  +RKK +   G DP+ +   +GY
Sbjct: 175 YEEVYGLDGDALYSTITE-FIRTIRKKCKEH-GADPIKTVWGVGY 217


>gi|257895927|ref|ZP_05675580.1| DNA binding response regulator CiaR [Enterococcus faecium Com12]
 gi|293377035|ref|ZP_06623245.1| transcriptional regulatory protein, C-terminal domain protein
           [Enterococcus faecium PC4.1]
 gi|257832492|gb|EEV58913.1| DNA binding response regulator CiaR [Enterococcus faecium Com12]
 gi|292644251|gb|EFF62351.1| transcriptional regulatory protein, C-terminal domain protein
           [Enterococcus faecium PC4.1]
          Length = 149

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV 142
           SL+  ++ F+ G DD + KP +  E++ RV A+ +R     +        +  D +  EV
Sbjct: 8   SLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGLFDENILKYKDISCDLKSNEV 67

Query: 143 --QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
             + +V P+  +E  +L Y + N+G  + K QIF  I+G FD      VVE ++S LRK 
Sbjct: 68  LYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG-FDSDTTITVVEVYMSNLRKH 126

Query: 201 LRNKLGFDP-VDSKRFLGY 218
           LR+  G D  + + R +GY
Sbjct: 127 LRST-GLDKEIKTLRNVGY 144


>gi|225387530|ref|ZP_03757294.1| hypothetical protein CLOSTASPAR_01283 [Clostridium asparagiforme
           DSM 15981]
 gi|225046366|gb|EEG56612.1| hypothetical protein CLOSTASPAR_01283 [Clostridium asparagiforme
           DSM 15981]
          Length = 233

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L L   IR  S+VP++ +S   S    +     G DD + KP    E++ARV A++
Sbjct: 58  GTDGLSLCARIRGESRVPIMIVSAKDSPLDRVTGITLGSDDYMVKPFLPLELVARVKALF 117

Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR + S   A    + G + +    R   V GE F +   E   L YL+   G+ V+K +
Sbjct: 118 RRAEYSQTEAPAAFKCGNLLLEQGARTITVGGEAFSVTPTEFDFLSYLLERAGQAVSKQE 177

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   I+ L D  ++  V +  + +LR+KL+ 
Sbjct: 178 LMREIWKLPDYELDTRVADDLVKRLRRKLKE 208


>gi|148259467|ref|YP_001233594.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326402691|ref|YP_004282772.1| two-component response regulator [Acidiphilium multivorum AIU301]
 gi|146401148|gb|ABQ29675.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325049552|dbj|BAJ79890.1| two-component response regulator [Acidiphilium multivorum AIU301]
          Length = 227

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 7/188 (3%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGV 95
           ++ +S   D   ++  L G G   L L   +RA   V P++ +S    +   +    +G 
Sbjct: 38  FMAASENFDAIILDRMLPG-GIDGLRLLETLRAQDNVTPVLFLSALGEVDDRVKGLKAGG 96

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           DD + KP    E+LARV A+ RR K      R   G + +    R  +  G+   L  RE
Sbjct: 97  DDYLTKPFAFAELLARVEAMARRGKGEGPATRLNVGDLEMDLLSRGVKRAGQKIDLQPRE 156

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
            R+LEYLM + G+ V +T +   ++   FD   + NV++ HIS+LR+K+        + +
Sbjct: 157 FRLLEYLMRHAGQVVTRTMLLEGVWDYHFDP--QTNVIDVHISRLRQKIDKPFDTPLLHT 214

Query: 213 KRFLGYSI 220
            R  GY +
Sbjct: 215 VRNAGYML 222


>gi|327440624|dbj|BAK16989.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 222

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 19/226 (8%)

Query: 2   FVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            V+I+D   +++    ++  +G D V+        FE  +Q +  E   A +  L+    
Sbjct: 4   IVIIEDTETIREELKTFLITYGFDAVA-----PTNFENIIQETLNE---APDLILLDINL 55

Query: 59  KVLE---LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            + +   + R IR  S VP+I ++   +    L   + G DD V KP + + +LAR+  I
Sbjct: 56  PIFDGYYICREIRKQSDVPIIVVTSRDNEMDELMSMNLGADDFVTKPYNTQILLARIETI 115

Query: 116 YRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR++ S+ R       +++         +GE   L + E +IL  L  N+GK V++  +
Sbjct: 116 LRRVQGSSMRDTLVYNDLKLNLSNGSVTYKGEKAELTKNEIKILSCLYKNKGKIVSRDDL 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
              ++   D  V++N +  ++++LRKKL   LG +  ++++R LGY
Sbjct: 176 MDFMWNA-DVFVDDNNLSVNVTRLRKKLE-ALGMEKNIETRRGLGY 219


>gi|319891399|ref|YP_004148274.1| DNA-binding response regulator KdpE [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161095|gb|ADV04638.1| DNA-binding response regulator KdpE [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323465422|gb|ADX77575.1| two-component response regulator KdpE [Staphylococcus
           pseudintermedius ED99]
          Length = 229

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL + IR    +P+I IS     QT ++  D+G +D + KP +  E+ AR+  + R   
Sbjct: 62  LELIKRIRQTFDIPIIVISARLDEQTIVEALDNGANDYMTKPFNVDELRARIRVVQRLEN 121

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + N +    E GP+ V    +  ++  ++  L   E  +LE L  + GK +    I  AI
Sbjct: 122 MQNQKEIVFENGPLVVSYQAKTAQIDNQLLNLTPHEFALLELLCRHVGKVLTYDTILKAI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           YG  +++ E   +  H++ LR KL
Sbjct: 182 YGYVNQS-EMPSLRVHMTSLRNKL 204


>gi|229189480|ref|ZP_04316497.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594071|gb|EEK51873.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 218

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE+  L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEANGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|119774679|ref|YP_927419.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767179|gb|ABL99749.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 224

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 3/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           + R+  A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR    
Sbjct: 63  ITRLRDAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGF 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R  +G + +    +   +  EV  +   E  ILEYLM +  + VAK ++   IYG  
Sbjct: 123 VKPRITSGSLELDLAAKQVTLDSEVLEITAFEYLILEYLMRHSHEVVAKQRLLDVIYG-- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D+  + N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 181 DKEGDPNTIEVMVSRLRKKLTRDGMDNPIVTIRGQGYKFN 220


>gi|332185053|ref|ZP_08386802.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
 gi|332014777|gb|EGI56833.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
          Length = 230

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 11/157 (7%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ RR++     A  G 
Sbjct: 76  ANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVRP----ALAGE 131

Query: 131 IRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             V++D      G      GEV  L   E R+L++ + + G   ++ ++  A++G  D  
Sbjct: 132 ALVYADIEMDTVGHKVRRAGEVVSLGPTEFRLLKHFLEHPGWVFSRERLLDAVWG-HDSD 190

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E   V+ HI +LRK +      D + + R  GYS+D
Sbjct: 191 IESRTVDVHIRRLRKAINIGDRPDIIRTVRSAGYSLD 227


>gi|329946264|ref|ZP_08293858.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328527556|gb|EGF54551.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 254

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)

Query: 61  LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L LPR+        IR  S VP+I +S   +    +   + G DD V KP  +RE+LAR+
Sbjct: 77  LMLPRLDGTEVCTRIRRSSSVPVIMLSAKDTELDKIVGLEIGADDYVTKPYSYRELLARL 136

Query: 113 AAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            A+ RR +V  +  E     G +R+  +  +  V GE   +P RE  +LE  + + G+ +
Sbjct: 137 KAVLRRSRVVPDEPEQVLAAGRVRMDVERHEVLVDGEAVAMPLREFELLELFLRHPGRVL 196

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSID 221
            + QI   ++G  D   +   ++ H+ +LR ++       PV   + R LGY +D
Sbjct: 197 TRGQIIERLWG-PDYEGDTKTLDVHVKRLRGRIEAD-ASKPVLITTVRGLGYRLD 249


>gi|291537655|emb|CBL10767.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291537790|emb|CBL10901.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 223

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +L   R  +A + VP+I ++   S    +   D G DD + KP    E+++RV A+ 
Sbjct: 60  GLDILTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALL 119

Query: 117 RRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR    N  ++     I +  D     V G++  L  +E  +L+YLM N+G  +++ +I 
Sbjct: 120 RRTSRMNEDSQLIHEDILMDMDKHAVTVAGQLCELTFKEFELLKYLMLNQGIVLSRDKIM 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G F+   E   V+ HI  LR+KL        + + R +GY I+
Sbjct: 180 DQVWG-FEYEGESRTVDMHIKTLRQKL--GAAGSCIKTVRNVGYMIE 223


>gi|289677045|ref|ZP_06497935.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 157

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 2/146 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132
           P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR      +    GP+ 
Sbjct: 6   PILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSGFIQSTITAGPLL 65

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  + +   +  +   L   E RILEYLM +  + V K ++   +Y   DE  + NV+E 
Sbjct: 66  LDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYPDDDER-DPNVIEV 124

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218
            + +LR+KL   + F P+++ R +GY
Sbjct: 125 LVGRLRRKLDGSVAFKPIETVRGMGY 150


>gi|156935481|ref|YP_001439397.1| DNA-binding response regulator CreB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533735|gb|ABU78561.1| hypothetical protein ESA_03340 [Cronobacter sakazakii ATCC BAA-894]
          Length = 230

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 10/209 (4%)

Query: 24  VSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGE-KVLELPR-IIRAHSQVPLIGIS 79
           + LEGF    FE  L +  +AR+ +  +    +G  +    EL R ++ AH  +P++ ++
Sbjct: 23  MQLEGFTVRTFERGLPALDAARQTLPDLVVLDVGLPDISGFELCRQLLAAHPALPVLFLT 82

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFS 135
                   L   + G DD V KP   RE+ ARV  I RRL+     A+T    G   +  
Sbjct: 83  ARSEEVDKLIGLEIGADDYVAKPFSPREVCARVRTILRRLQKQQRGAQTVVRVGRFELND 142

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
           +       G+   L R E  +L+ L+   G+  ++ Q+   ++G  +++ +   V++HI 
Sbjct: 143 EAAHIAWCGQPLSLTRYEYLLLKTLLLAPGRVYSRQQLMDIVWGDANDSFDRT-VDTHIK 201

Query: 196 KLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
            LR KLR       PV++ R LGYS+  N
Sbjct: 202 TLRAKLRAVNPDVSPVNTHRGLGYSLAVN 230


>gi|146338745|ref|YP_001203793.1| two-component regulatory system response regulator [Bradyrhizobium
           sp. ORS278]
 gi|146191551|emb|CAL75556.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Bradyrhizobium sp. ORS278]
          Length = 235

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA S   Q+P+I ++        +    +G DD + KP    E+LARV  + R
Sbjct: 62  IELCRRLRARSETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   S  R  T    G I +  + R     G    L   E R+LE+ + + G+  ++ Q+
Sbjct: 122 R--ASPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 180 LDSVWG-RDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|18309101|ref|NP_561035.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|18143776|dbj|BAB79825.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 226

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP+I ++   S    L   + G DD V KP + + +LAR+A+I +R   S
Sbjct: 65  ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ET       ++      +   + EV  L + E +IL  L+ N+GK V++  I  A+
Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFKDEVEELTKNESKILNILIRNKGKIVSRDNIIKAL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   +E +++N +  ++++LR+K+        + +KR  GY
Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223


>gi|209364452|dbj|BAG74710.1| response regulator-like protein [Streptomyces lavendulae]
          Length = 257

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 10/160 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA  ++P+I ++   S    +    +G DD + KP   RE++AR+ A+ RR + 
Sbjct: 100 EVCRGIRAAHEIPVIAVTARGSELDRVLGLQAGADDYLVKPYGFRELMARMEAVMRRARP 159

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S   A T   GP+R+ +  R+  + GE     R+E  +L  L ++    + +  +   ++
Sbjct: 160 SRPAAATITCGPLRIDAGTREVTLHGEPVETTRKEFDMLYLLASHPDTVIPRKMLMQQVW 219

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G   ++     V++H+S     LRNK+G + + + R +G+
Sbjct: 220 G---DSWSRRTVDTHVS----TLRNKIGANWIITIRGVGF 252


>gi|166365093|ref|YP_001657366.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166087466|dbj|BAG02174.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 221

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 105/215 (48%), Gaps = 7/215 (3%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL +  Y+     DG   EG+N LE  ++        +  +   L+ +  +  E    + 
Sbjct: 10  ALSERQYVVDVARDGE--EGWNWLELGKYDLLVLDVTLPKLSGTLLCQRLRRAESHHPVS 67

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A++ VP++ ++   ++   +D  D+G DD V KP    E++AR+ A+ RR    S+    
Sbjct: 68  ANATVPVLLLTARDTVIDKIDGLDAGADDYVTKPFDLGELMARIRALIRRGSSTSSVLLS 127

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G +++     +    G++  L  +E  +LE L+ +  + ++++ I   ++ L D   EE
Sbjct: 128 WGGLQLNPSTHEASYNGQLLSLTPKEFALLELLVTHGRRVLSRSGIIERVWSLDDSPAEE 187

Query: 188 NVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
            V  SHI  LR KL++ LG   D +++   LGY +
Sbjct: 188 TVT-SHIRGLRHKLKS-LGAPEDFIETVHGLGYRL 220


>gi|90426389|ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108403|gb|ABD90440.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 234

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA     Q+P+I ++        +    +G DD + KP    E+LARV  + R
Sbjct: 62  IELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   S  R  T    G I +  D R     G    L   E R+LE+ + + G+  ++ Q+
Sbjct: 122 R--ASPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 180 LDSVWG-RDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|329767893|ref|ZP_08259407.1| hypothetical protein HMPREF0428_01104 [Gemella haemolysans M341]
 gi|328838681|gb|EGF88280.1| hypothetical protein HMPREF0428_01104 [Gemella haemolysans M341]
          Length = 225

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 2/175 (1%)

Query: 48  AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107
           AI   ++ + + V  + ++       P++ ++    ++  +   DSG DD + KP   +E
Sbjct: 48  AILDVMMPQMDGVTVVKKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVTKE 107

Query: 108 ILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           +LARV ++ RR    ++N  E G + +     +   + +   L  +E +++E LM N G 
Sbjct: 108 LLARVRSMTRRQATFTSNVLELGNVSLSKYTFELATEKDKVRLSNKEYQMMEMLMRNPGN 167

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   Q    I+G +D   E NVV  +IS LRKKL+       + + R +GY+++
Sbjct: 168 VIQTEQFLERIWG-YDSESEINVVWVNISYLRKKLKALDANIHIKATRNVGYTLE 221


>gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 223

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 63  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  EV GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 123 KQEQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204


>gi|255601445|ref|XP_002537677.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
 gi|223515490|gb|EEF24706.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
          Length = 228

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 26/202 (12%)

Query: 16  IALFGDDGVSLEGFNSLEFEE-----WLQSSAREDVSAIEAFLIG--KGEKVLELPRIIR 68
           +ALF   G+S  G+     +       L +S   +   ++  L G   G  ++E  R  +
Sbjct: 15  VALFLKKGLSESGYEVHHADNGRDGMLLAASTPYEAIIMDRMLPGGIDGLSIIEALR--K 72

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------L 119
             + VP++ +S    +   +    SG DD + KP    E+LARV AI RR         L
Sbjct: 73  TGNNVPILILSAMAEVDDRIKGLQSGGDDYLIKPFSFGELLARVEAIIRRSRELTERTYL 132

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V N   +    +V+ DG+          L  RE  +LEYLM +  K V +T +   ++ 
Sbjct: 133 VVGNLHMDIMKHKVYRDGK-------AILLQPREFHLLEYLMRHANKVVTRTMLLENVWD 185

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +D   + NVV+ HISKLR+KL
Sbjct: 186 -YDFDPQTNVVDVHISKLRQKL 206


>gi|114766017|ref|ZP_01445029.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Pelagibaca bermudensis
           HTCC2601]
 gi|114541735|gb|EAU44774.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseovarius sp.
           HTCC2601]
          Length = 222

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G    E+ R +R+     P+I ++    +   +   D+G DD + KP   RE+ AR   +
Sbjct: 54  GRSGYEVLRSMRSRGDATPVIVLTARSEIDDRVVGLDAGADDYMVKPFDFRELSARCRVL 113

Query: 116 YRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR    S+N    GP R     +   V G +  L  RE ++LE ++ N G+ + K ++ 
Sbjct: 114 ARRRAGASSNVFAAGPFRFDRAAKQAHVDGVLLELRAREVQLLEIMLDNLGRMLTKEEVA 173

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
             +Y  F+E    N VE  +++LR+    KLG  P  + + R LGY
Sbjct: 174 DKLY-TFEETPSLNAVEQLVTRLRR----KLGGTPLVIKTARGLGY 214


>gi|295114725|emb|CBL35572.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 237

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 19/194 (9%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRAHSQVPLIGISD 80
           +S EG+  +E E  LQ++   D S I+ +++      E   E  + IRA  Q PL+ ++ 
Sbjct: 26  LSAEGYEVVEAENGLQAARLADES-IDMYILDVNMPEETGFEAAKKIRARFQAPLLFLTA 84

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN----NRAET----GPIR 132
           Y      ++ F  G DD + KP  + E++ RV A++RR +        R ET    G I 
Sbjct: 85  YSGEADKVNGFLIGADDYIVKPFSNMEMIMRVRAVFRRAEQGTPPAAAREETAEKKGMIP 144

Query: 133 VFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           +     D E Q       V  L   E RILE +  +R K  +   I+ +++G  ++AV +
Sbjct: 145 IGDLLLDTESQSLIKNQAVISLTYTEYRILELMAKHRKKIYSLDNIYQSVWG--EDAVVD 202

Query: 188 NVVESHISKLRKKL 201
             +  HI  +RKK+
Sbjct: 203 GAIMVHIKNIRKKM 216


>gi|86751792|ref|YP_488288.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86574820|gb|ABD09377.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 221

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 16/214 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L + GYIA    DG           E W +    +  + I    + + + +  L R  
Sbjct: 18  RGLTEAGYIAECVADGE----------EAWFRGDTEDYAAIILDLGLPRLDGLTILKRWR 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA 126
            A  + P++ ++   S    +D  D+G DD + KP    E+LAR+ +I RR    +++  
Sbjct: 68  EAGRRTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSAGHASSVV 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +        ++G+   L   E R+  YL+ +RG+ V++ ++   IYG  D+A +
Sbjct: 128 CIGDLTLDERQMQVSLRGQKVALSPLEYRLASYLVLHRGRVVSQFELNENIYGQ-DDAHD 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N +E  + ++RK    KLG + ++++R  GY +
Sbjct: 187 SNAIEVLVGRVRK----KLGPELIETRRGFGYIV 216


>gi|42780487|ref|NP_977734.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|206977570|ref|ZP_03238464.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217958874|ref|YP_002337422.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095033|ref|YP_002529093.1| response regulator [Bacillus cereus Q1]
 gi|42736406|gb|AAS40342.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|206744288|gb|EDZ55701.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068126|gb|ACJ82376.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239091|gb|ACM11801.1| response regulator [Bacillus cereus Q1]
          Length = 223

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 63  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  EV GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 123 KQEQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204


>gi|307729779|ref|YP_003907003.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307584314|gb|ADN57712.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 219

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 7/163 (4%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL R +R A   VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR 
Sbjct: 60  MELLRRLRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRA 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  S        + V    +  EV G    L  RE  IL  L+ N+G   +++++  ++Y
Sbjct: 120 QGRSVELIRYRDLSVNPAAQAVEVAGRRVSLTSREWAILLQLLTNQGIPQSRSRLEESLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G + E +E N +E H+S LRK    KLG + + + R +GY ++
Sbjct: 180 G-WQEEIESNAIEVHVSNLRK----KLGANLIRTVRNIGYVVE 217


>gi|196233990|ref|ZP_03132826.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196221929|gb|EDY16463.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 230

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 19/212 (8%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           ++GY+A    DG   +G   L+       +A  D + I+  ++ K + +  + RI +  +
Sbjct: 28  QNGYLAEISSDGE--DGLQKLQ-------TAPFDAAVID-LMLPKMDGLSLIERIRKGKT 77

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETG 129
            V ++ +S   S++  +    SG DD + KP    E+LARV AI RR+  +    R E+ 
Sbjct: 78  PVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRVSREAEVERLESA 137

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +       + +G    L  RE  +LE L+ NRG+ + K Q+   ++   FD   + N
Sbjct: 138 GVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERLWDYSFDP--QTN 195

Query: 189 VVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
           VV+  + +LR KL    GFD   + + R +GY
Sbjct: 196 VVDVLVCRLRNKLDR--GFDTKLIHTLRGIGY 225


>gi|120611930|ref|YP_971608.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120590394|gb|ABM33834.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 230

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 3/150 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ +S   S +  +   D+G DD + KP   +E+ AR+ A+ RR   S +    G +
Sbjct: 80  RTPVLVLSARDSTEERIAGLDAGADDYLGKPYELKEVEARLRALARRTTGSGDLVTVGRL 139

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           ++    R   V  +   LP RE  +L  LM   G+ ++K+ +   +     EA+ +N +E
Sbjct: 140 QLDRQARRCSVDAQALELPAREFELLWELMTPPGRVLSKSDLSQRLSD-GGEALGDNALE 198

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S +S+LR+KL        + + R LGY+++
Sbjct: 199 SFVSRLRRKLAGSGAV--IRTLRGLGYTLE 226


>gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation)
           [Geobacillus kaustophilus HTA426]
 gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 235

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 10/139 (7%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRVFSDGRDPEVQG 144
            + G DD + KP   RE++ARV AI RR ++    AE+      G + +F +  +  + G
Sbjct: 93  LELGADDYMTKPFSPREVIARVKAILRRTEIVQPAAESSERLVVGELEIFPERYEATIGG 152

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +   L  +E  +L YL  ++G+ + + Q+ SA++  ++ A +  +V+ HIS LR+K+   
Sbjct: 153 KPLELTPKEFELLLYLARHKGRVLTRDQLLSAVWN-YEFAGDTRIVDVHISHLREKIETD 211

Query: 205 LGFDP--VDSKRFLGYSID 221
               P  + + R LGY ++
Sbjct: 212 TK-KPMYIKTVRGLGYKLE 229


>gi|209549806|ref|YP_002281723.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535562|gb|ACI55497.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 223

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE +  +P++ R     P+I ++     +  ++  D G DD + KP    E++AR+ A+ 
Sbjct: 57  GEGLSFIPQLRRTGKDTPIIVLTALNEPKERVEGLDLGSDDYLGKPFLVEELMARLRAVL 116

Query: 117 RR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR      LK++  R    P+ +     D  +      LPRRE  +L  L   + K V +
Sbjct: 117 RRPPNLAELKITAGRMVIDPLHLSVTVDDAPLD-----LPRRELLVLAALAKRKEKTVLR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + +A+Y  ++E ++ N +++HIS+LR++L        + + R +GY
Sbjct: 172 ATLEAAVYN-YEEEIQSNALDAHISRLRRRLAEAGAEVSIHNIRGVGY 218


>gi|311747935|ref|ZP_07721720.1| DNA-binding response regulator [Algoriphagus sp. PR1]
 gi|126574903|gb|EAZ79261.1| DNA-binding response regulator [Algoriphagus sp. PR1]
          Length = 222

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 6/161 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL R  R   S  P+I ++   ++  T+    SG +D + KP H  E+L R+    R  
Sbjct: 60  IELTRQFRKQFSDTPIIFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIRVQLRAK 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K +  +   GPI V    R   ++ E    L ++E  +LEYLM N+ K   +T+I  +++
Sbjct: 120 KGAKEKFTLGPI-VLDTERHIVLKNEQEIQLTQKEFALLEYLMRNKNKVCRRTRIIESVW 178

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + FD      V++  I+ LRKKL  +   D + + R +GY
Sbjct: 179 DIHFD--YNTGVIDVFINSLRKKLDLQKDEDYIQTIRGVGY 217


>gi|117164773|emb|CAJ88322.1| putative response regulator [Streptomyces ambofaciens ATCC 23877]
          Length = 238

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 8/150 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R+IR  S+VP++  +        +   ++G DD + KP    ++ AR+AA+ RR +
Sbjct: 70  LDVLRMIRGISRVPVLVATARDDETEIIRLLNAGADDYMVKPFSGGQLAARLAAVLRRSE 129

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++ RA      +   +RV    R   + G    L RRE  +L YL AN  + +++ +I 
Sbjct: 130 PADVRAARRSVLQVADLRVDPTARTAHLAGRELSLTRREFDLLAYLAANADQVISRQRIL 189

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           + ++      +E+  V+ H+S LR+KL  K
Sbjct: 190 TEVWQ--QPYLEDQTVDVHLSALRRKLGEK 217


>gi|293607635|ref|ZP_06689969.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292814068|gb|EFF73215.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 237

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 5/153 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130
           VP++ ++   SL+  L  F  G DD + KP    E+ AR+ A+ +R + +   A  E GP
Sbjct: 84  VPVLMLTARDSLEDKLAGFSHGADDYLTKPFALLEVEARLLALIQRSRGATVEAVREFGP 143

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           ++  +  R   V G+   L R+   I+E LM + G+ VA+ ++ S ++G  +E    + +
Sbjct: 144 LKYDTRSRSVVVNGQPVHLTRKASLIMEALMRDPGRVVAREELESLLWG--NEPPSSDAL 201

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            S +  LR+ L +  GFD +++    G+ +  N
Sbjct: 202 RSQVHLLRRALADA-GFDGIETLHGTGWRLTLN 233


>gi|110834862|ref|YP_693721.1| transcriptional regulatory protein [Alcanivorax borkumensis SK2]
 gi|110647973|emb|CAL17449.1| Transcriptional regulatory protein, putative [Alcanivorax
           borkumensis SK2]
          Length = 221

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 16/155 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----- 126
           Q+P+I IS   +L+  +   D G DD + KP    E++AR+ A  RR +   +       
Sbjct: 72  QIPVIIISARDALEDRIGGLDCGADDYLVKPFSAVEMIARIRARLRRREPPGSETLHLGE 131

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E  P+R     R     GE+  L RRE  +L  L+ +RG+ + + Q+   +YG ++E V
Sbjct: 132 LEIDPVRFIVTRR-----GELVNLSRREMSLLMQLLRHRGRVLTRDQLEGGLYG-WNEDV 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E N +E HI  LRK    KLG D + + R +GYS+
Sbjct: 186 ESNALEVHIHHLRK----KLGSDLIRTVRGVGYSL 216


>gi|87198411|ref|YP_495668.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134092|gb|ABD24834.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 229

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IR  SQVP+I IS        +   D G DD VNKP    E++AR+    RR   
Sbjct: 63  EVIRVIRESSQVPIIVISARHQEAEKIAALDEGADDYVNKPFEIGELMARIRVAVRRATS 122

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               A   E GP+R+    R+ E+ GE   L  +E  +L  L  N G+ V   ++ +A +
Sbjct: 123 QPANAAIFEGGPLRIDFAKREVELMGEPIKLSPKEYMLLHALARNVGQVVTHKRLLAAGW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G  +   +   +  ++  LR+KL
Sbjct: 183 G--NSTADLQYLRVYMGLLRQKL 203


>gi|319945731|ref|ZP_08019982.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319748091|gb|EFW00334.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 217

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP++ ++ +      L  F    D  + KP     +  R+ AI+++L+
Sbjct: 60  LEVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGYLEKPFSLSLLKVRIEAIFKKLQ 119

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  R  T G  RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++ 
Sbjct: 120 PS--RVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215


>gi|197303868|ref|ZP_03168903.1| hypothetical protein RUMLAC_02606 [Ruminococcus lactaris ATCC
           29176]
 gi|197297051|gb|EDY31616.1| hypothetical protein RUMLAC_02606 [Ruminococcus lactaris ATCC
           29176]
          Length = 223

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130
           +P+I ++   S    +   DSG DD V KP    E+++R+ A+ RR + +  ++  E   
Sbjct: 74  IPVIMVTAKGSEYDKVMGLDSGADDYVTKPFGMMELVSRIKAVLRRSRKTEEKSQIELSG 133

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +     +  V G+   L  +E  +LE +M N+G  + + Q+ + I+G +D   E   V
Sbjct: 134 ICMNIKKHEVTVNGKEVALTLKEFELLEKMMLNKGIVLTRDQLLTEIWG-YDFDGETRTV 192

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + H+  LR+KL  K   D + + R +GY +
Sbjct: 193 DVHVRTLRQKLGEK--GDLIQTVRGVGYRV 220


>gi|325689898|gb|EGD31902.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
          Length = 224

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V          G+   L  +E  +L Y + N+ + + KTQIF  ++G FD     +VVE
Sbjct: 133 TVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNEILPKTQIFDRLWG-FDSDTTVSVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+       + + R +GY
Sbjct: 192 VYVSKIRKKLKGTTFAKNLHTLRSVGY 218


>gi|319442620|ref|ZP_07991776.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Corynebacterium
           variabile DSM 44702]
          Length = 225

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + DG       +G+ ++  N  E    + S A  D   ++  + G  G +V
Sbjct: 3   ILVVDDEVRLADGVRRGLEAEGMVVDVVNDGETGLAMASDADYDAIVLDVMMPGMNGYRV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R     +  P++ ++        ++  D+G DD + KP  +  ++AR+ A+ RR  
Sbjct: 63  CEALR--EDGNWTPVLFLTAKDGEWDEVEGLDTGGDDWLTKPFSYPVLVARLRAMVRR-- 118

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S  R E    G +R+    R      +  PL  RE  +L++L+ + G+ V K ++ + +
Sbjct: 119 GSRGRPEILSAGDLRLDPAARQAYRSDDEIPLTARELAVLDFLLRHAGEVVTKQEVLANV 178

Query: 178 Y-GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + G FD   + N+VE +I  LR K+    G   + + R  GY +D N
Sbjct: 179 WGGSFDG--DTNIVEVYIGHLRAKVDRPFGRAAIGTVRGAGYRLDRN 223


>gi|295091242|emb|CBK77349.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 237

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 19/194 (9%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRAHSQVPLIGISD 80
           +S EG+  +E E  LQ++   D S I+ +++      E   E  + IRA  Q PL+ ++ 
Sbjct: 26  LSAEGYEVVEAENGLQAARLADES-IDMYILDVNMPEETGFEAAKKIRARFQAPLLFLTA 84

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN----NRAET----GPIR 132
           Y      ++ F  G DD + KP  + E++ R+ A++RR +        R ET    G I 
Sbjct: 85  YSGEADKVNGFLIGADDYIVKPFSNMEMIMRIRAVFRRAEQGTPPAAAREETAEKKGMIP 144

Query: 133 VFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           +     D E Q       V  L   E RILE +  +R K  +   I+ +++G  ++AV +
Sbjct: 145 IGDLLLDTESQSLIKDQAVISLTYTEYRILELMAKHRKKIYSLDNIYQSVWG--EDAVGD 202

Query: 188 NVVESHISKLRKKL 201
             +  HI  +RKK+
Sbjct: 203 GAIMVHIKNIRKKM 216


>gi|224541807|ref|ZP_03682346.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525275|gb|EEF94380.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM
           15897]
          Length = 231

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 13/155 (8%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           ++R  ++ P++ ++           F SG DD + KP  + E+  RV A+ RR  V   +
Sbjct: 66  LLREKTKAPILFLTAKGQDSDKTLGFSSGGDDYLTKPFSYNELNGRVKALLRRYHVYQGK 125

Query: 126 A---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +TG I V S  R   + GE   L   E  ILEYL+ N+ + ++ +Q+F A
Sbjct: 126 GTTQEKQITYKTGNIEVNSAKRTASIDGEKLNLTDLEYNILEYLLMNKQQVISPSQLFEA 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           I+         N +  HI  LR+K+      DP +
Sbjct: 186 IWHEEYYYGANNTIMVHIRHLRQKIEK----DPTN 216


>gi|90579722|ref|ZP_01235531.1| transcriptional regulator [Vibrio angustum S14]
 gi|90439296|gb|EAS64478.1| transcriptional regulator [Vibrio angustum S14]
          Length = 223

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 12/205 (5%)

Query: 28  GFNSLEF--------EEWLQSSAREDVSAIEAFLIGKG-EKVLELPRIIRAHSQVPLIGI 78
           GFN+L F         E L  +   D   I   L+  G + +  L ++ +   +  +I +
Sbjct: 19  GFNNLGFSTDEAENGNEGLTLALDNDYDIIILDLMLPGIDGMTILNKLRQTGIETRIIIL 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSD 136
           S     Q  +D    G DD V KP    E+ ARV AI RR +  +  N  E     +  +
Sbjct: 79  SAKTQSQDRIDGLMQGADDYVTKPFSFDELHARVVAISRRCQAVSITNTIEIDGFLLDLN 138

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R          L   E +I++YL  +RG+ +  + I   I   FD  + +N +E HIS 
Sbjct: 139 KRTLFYGNNDLELTPNEFKIIDYLFTHRGQILTASMISDNITNNFD-YISKNTIEVHIST 197

Query: 197 LRKKLRNKLGFDPVDSKRFLGYSID 221
           +RKK +N     P+ +KR  GY ++
Sbjct: 198 MRKKAKNIEAVLPIKNKRGFGYYVE 222


>gi|330994125|ref|ZP_08318053.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp.
           SXCC-1]
 gi|329758592|gb|EGG75108.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp.
           SXCC-1]
          Length = 226

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 6/188 (3%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           ++  S + D+  ++  L G  + V  L  I   ++  P++ +S    +   +    +G D
Sbjct: 38  FMAVSEKFDLIILDRMLPGGIDGVRLLETIRAQNNTTPVLLLSALADVDDRVQGLKAGGD 97

Query: 97  DVVNKPIHHREILARVAAIYRRLKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           D V KP    E+LARV A+ RR +       + E   + +    R     G+   L  RE
Sbjct: 98  DYVTKPFAFSELLARVEALGRRGRTEAAPQTKLELADLEIDLLSRTVRRAGQKIDLQPRE 157

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
            R+LEYL  + G+ V +T +   ++   FD   + NV++ H+S+LR+K+    G   + +
Sbjct: 158 FRLLEYLTRHAGQVVTRTMLLEGVWDYHFDP--QTNVIDVHVSRLRQKVDKPFGTPLIHT 215

Query: 213 KRFLGYSI 220
            R  GY +
Sbjct: 216 IRNAGYML 223


>gi|296134128|ref|YP_003641375.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032706|gb|ADG83474.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 237

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 9/154 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ ++   +++  ++  D+G DD + KP    E+LAR+ A+ RR +  N  +E   I
Sbjct: 72  KTPVLLLTARDAVEDRVEGLDAGADDYLVKPFATEELLARIRALARR-QSENFHSE--KI 128

Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           RV S   DP         E   L  +E ++LE  M N G+ + K QI   ++GL D  VE
Sbjct: 129 RVGSLTLDPLHCEITCGDEKVRLTYKETQLLELFMRNSGQVITKEQILDRVWGL-DSEVE 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N VE +I  LRKK+  +     +++ R +GY +
Sbjct: 188 LNNVEIYIHYLRKKIVPEKSKVRLETVRGVGYCL 221


>gi|291541536|emb|CBL14646.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 223

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R       VP+I ++   S    +   D G DD + KP    E+++RV AI 
Sbjct: 59  GLSVLEKMRRDAVTKNVPVILVTAKGSEMDKVKGLDMGADDYITKPFSVLELISRVRAIL 118

Query: 117 RRLKVSNNR--AETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR  V + +   + G I VF D +      GE   L  +E  +L+YL+ N+G  + +  I
Sbjct: 119 RRCSVDDRQDVIKLGQI-VFDDSKHIVTSCGEECNLTFKEYELLKYLLKNKGMALTRENI 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G +D   E   V+ HI+ LR+KL
Sbjct: 178 ILNVWG-YDFEGESRTVDMHITTLRQKL 204


>gi|220922718|ref|YP_002498020.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219947325|gb|ACL57717.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 221

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L RI  A S VP++ ++   ++   +   D G DD + KP    E  ARV A+ RR + +
Sbjct: 63  LRRIRAAKSAVPVMILTARDAVTDRVRGLDLGADDYLLKPFAPAEFEARVRALIRRGQGL 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N     G + +        +  E   L RRE  +L  LMA  G+ V K ++   ++G F
Sbjct: 123 PNPVLRCGALSLDRATGTVTLGDEPVSLRRRELAVLTVLMARAGQVVPKERLSGEVFG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DEAV  N +E ++++LRKKL+       + + R LGY +D
Sbjct: 182 DEAVAPNALELYVARLRKKLQPN--GPEIRTIRGLGYLLD 219


>gi|89092005|ref|ZP_01164960.1| Two component Transcriptional regulator, Winged helix family
           protein [Oceanospirillum sp. MED92]
 gi|89083740|gb|EAR62957.1| Two component Transcriptional regulator, Winged helix family
           protein [Oceanospirillum sp. MED92]
          Length = 219

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 9/162 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +RA +   P++ ++   +++  ++  D G DD + KP    E+ AR+ A+ RRL
Sbjct: 62  LEILKRLRAENISTPVLILTARHAVEERVNGLDLGADDYLTKPFEMDELEARLRAVQRRL 121

Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    T G I++ S  R    +G      RRE  +L  L+ N G+ + + +I + +Y
Sbjct: 122 HGRSKEEITFGDIKIDSAARQVFFKGSPIEASRREFDLLVLLLNNTGRVMTRAKIEATLY 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               + VE N +E HI  LRK    KLG + + + R +GY +
Sbjct: 182 A---DDVESNALEVHIHNLRK----KLGKELISTVRGVGYYV 216


>gi|271965271|ref|YP_003339467.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508446|gb|ACZ86724.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 7/138 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           +R  + VP+I +S     Q  ++  D+G DD V KP +  E+LAR+ A+ RR  V +   
Sbjct: 67  LRGWTAVPIIVLSGRAGNQDKVEALDAGADDYVTKPFNIEELLARMRAVTRRTAVQDAEP 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            R E G   V  D  D  + G V   P  E R+LE L+ N GK +++ Q+ + ++     
Sbjct: 127 ARIEIGGHTV--DLADKTISGGVRLTP-TEWRMLELLLRNPGKLISQRQMLTEVWD-SKH 182

Query: 184 AVEENVVESHISKLRKKL 201
             E N +  ++++LR+KL
Sbjct: 183 TTETNYLRQYMAQLRRKL 200


>gi|227551464|ref|ZP_03981513.1| response regulator [Enterococcus faecium TX1330]
 gi|227179408|gb|EEI60380.1| response regulator [Enterococcus faecium TX1330]
          Length = 147

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV 142
           SL+  ++ F+ G DD + KP +  E++ RV A+ +R     +        +  D +  EV
Sbjct: 6   SLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGLFDENILKYKDISCDLKSNEV 65

Query: 143 --QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
             + +V P+  +E  +L Y + N+G  + K QIF  I+G FD      VVE ++S LRK 
Sbjct: 66  LYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG-FDSDTTITVVEVYMSNLRKH 124

Query: 201 LRNKLGFDP-VDSKRFLGY 218
           LR+  G D  + + R +GY
Sbjct: 125 LRST-GLDKEIKTLRNVGY 142


>gi|313681083|ref|YP_004058822.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153798|gb|ADR37649.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 235

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 2/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R  + H  VP+I ++   +++  +     G DD + KP H  E+LAR+    RR + 
Sbjct: 74  EIARRAKQHGDVPIIVLTATDAVERKVQLLLGGADDYLTKPFHPAELLARIQVQLRRGEG 133

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R   G + +  + R     G    L  +E  +LE L +  G+  ++ +I   I+G  
Sbjct: 134 GEVR-RVGDLEIEVETRRVRAGGREVALSPKEFALLELLSSRPGRVFSRDEIARHIWGKP 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E  E NVV+ H++ LR KLR    +  + + R +GY++
Sbjct: 193 LE-TESNVVDVHVANLRAKLREAGAYGYLRTVRGVGYAL 230


>gi|296876253|ref|ZP_06900306.1| response regulator [Streptococcus parasanguinis ATCC 15912]
 gi|296432758|gb|EFH18552.1| response regulator [Streptococcus parasanguinis ATCC 15912]
          Length = 217

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP++ ++ +      L  F    D  + KP     +  R+ AI+++L+
Sbjct: 60  LEVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGYLEKPFSLSLLKVRIEAIFKKLQ 119

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  R  T G  RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++ 
Sbjct: 120 PS--RVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215


>gi|260548960|ref|ZP_05823182.1| two-component system DNA-binding response regulator [Acinetobacter
           sp. RUH2624]
 gi|260408128|gb|EEX01599.1| two-component system DNA-binding response regulator [Acinetobacter
           sp. RUH2624]
          Length = 224

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 11/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  MQVLKQIRQRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSG 120

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V    A      E+G + +  +      +G+   L  RE  IL  LM++  K  +K  + 
Sbjct: 121 VEAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLE 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y  FD  V  N +E ++  LR     KLG D + + R LGY +
Sbjct: 181 DKLYD-FDSDVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 221


>gi|168213386|ref|ZP_02639011.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715170|gb|EDT27352.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 226

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP+I ++   S    L   + G DD V KP + + +LAR+A+I +R   S
Sbjct: 65  ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ET       ++      +   + EV  L + E +IL  L+ N+GK V++  I  A+
Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFKDEVEELTKNESKILNILIRNKGKIVSRDNIIKAL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   +E +++N +  ++++LR+K+        + +KR  GY
Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223


>gi|264680915|ref|YP_003280825.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299530906|ref|ZP_07044320.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262211431|gb|ACY35529.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298721127|gb|EFI62070.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 225

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 4/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR +  +++  + GP+
Sbjct: 74  LPVLILTAADSIEERVQGLDYGADDYMAKPFALSELEARVRALTRRGMGGASSTIKHGPL 133

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
                GR   + G++  L  RE  +LE L+   G+ V+K Q+   +   + E V  N +E
Sbjct: 134 VYDQTGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLCE-WGEEVSNNAIE 192

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +I +LRKK+    G   + + R LGY ++
Sbjct: 193 VYIHRLRKKIEK--GPIRIATVRGLGYCLE 220


>gi|168211855|ref|ZP_02637480.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170710190|gb|EDT22372.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 226

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP+I ++   S    L   + G DD V KP + + +LAR+A+I +R   S
Sbjct: 65  ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ET       ++      +   + EV  L + E +IL  L+ N+GK V++  I  A+
Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFKDEVEELTKNESKILNILIRNKGKIVSRDNIIKAL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   +E +++N +  ++++LR+K+        + +KR  GY
Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223


>gi|164687352|ref|ZP_02211380.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
 gi|164603776|gb|EDQ97241.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
          Length = 226

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 6/153 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----E 127
           Q+P+I ++     +  L+  + G DD + KP   +E+LAR+ ++ RR K ++N      +
Sbjct: 75  QIPVIMLTAKNMEEDKLEGLEDGADDYITKPFSVKEVLARITSVLRRYKYTSNEKIEVLK 134

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              I+V  +       G+   L  +E +IL+ L+ N+G  + +T +   I+G +D   E 
Sbjct: 135 ADDIQVNVNKHIVTKNGQEIELTLKEFQILKLLIENKGNVLTRTFLLDKIWG-YDYYGET 193

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++ HI  LRKK+ +      +++ R +GY I
Sbjct: 194 RTLDVHIRHLRKKIGDN-DSKLIETVRGVGYKI 225


>gi|332754263|gb|EGJ84629.1| transcriptional regulatory protein qseB [Shigella flexneri 2747-71]
          Length = 219

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G   +  
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDSR-- 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|328951450|ref|YP_004368785.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451774|gb|AEB12675.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 221

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 2/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+   +       ++ ++    +++ +    +G  D V KP   +E+LARV A  R  K
Sbjct: 63  LEVAHRVAGQKDTSILMLTARGDVESRVQGLYAGASDYVTKPFSLKELLARVHARLRERK 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G + +    R   V G V PL  RE  +LE L+ NRG+  +K ++   +YG+
Sbjct: 123 RHEDVIRVGTLELDRVKRQCRVDGAVVPLTAREYALLELLLVNRGRIFSKEELEDRLYGM 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              A   N +E  IS LR+KL  +     + + R +GY +
Sbjct: 183 DLPA--SNTIEVFISNLRRKLAARGVQGLITTVRGMGYVV 220


>gi|319784369|ref|YP_004143845.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170257|gb|ADV13795.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 225

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 13/148 (8%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R++R   ++VP+I ++   SL   +   + G DD + KP    E+ AR+ A  RR 
Sbjct: 60  LEVLRMLRTRGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRR- 118

Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +N+R  T P+    D       R   + GE   L  RE  +LE LM   G+ V+K  +
Sbjct: 119 --ANDR--TAPVVACGDLVFDTNTRLFSLAGEALALTPREHAVLEQLMVKAGRTVSKAAL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            +AIY  F+   + + +E ++ ++RKKL
Sbjct: 175 SAAIYD-FETDADPSAIEIYVHRVRKKL 201


>gi|309790009|ref|ZP_07684584.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227952|gb|EFO81605.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 227

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 64  PRIIRA----HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           P I RA     + + L+ ++    L+  +   DSG DD + KP    E+LARV A+ RR 
Sbjct: 60  PTICRAIRAARTPMALLLLTARGQLEDRVKGLDSGADDYLVKPFAFEELLARVRALSRRF 119

Query: 120 KVSNNRAETGPIRV---FSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             S +  +T  +RV     D R    +    V  L   E  +LEYLM N G  +++ QI 
Sbjct: 120 TPSGS--DTSELRVGEIVLDLRSHTARRGNRVLDLTPTEWNLLEYLMRNVGLSLSRQQIL 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++  ++  V+  +V+ +IS LR+KL      DP+ + R +GY ++
Sbjct: 178 DYVWS-YERDVQIALVDVYISYLRRKLNAPGESDPIMTVRGVGYRLE 223


>gi|227505097|ref|ZP_03935146.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198300|gb|EEI78348.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 232

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 24/203 (11%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+G+  +   DG  +LE F            A   V  +   L+  G    ++ + +R
Sbjct: 21  LRKEGFDVILASDGPTALEQF------------ANNTVDIVLLDLMLPGMSGTDVCKQLR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   VS    E
Sbjct: 69  ATSSVPVIMVTSRDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHDVSAESQE 128

Query: 128 TG-PIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            G   ++   GR   D E     V GE   +P +E  +LEYL+ N G+ + + Q+   I+
Sbjct: 129 EGLEEQILEGGRVRMDVERHIVMVDGEEVSMPLKEFDLLEYLLRNAGRVLTRGQLIDRIW 188

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G  D   +   ++ H+ +LR K+
Sbjct: 189 G-ADYVGDTKTLDVHVKRLRSKI 210


>gi|255283042|ref|ZP_05347597.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM
           14469]
 gi|255266344|gb|EET59549.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM
           14469]
          Length = 226

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R +R  S  +P+I ++   +     + + SG+DD + KPI + E+   + A+ RR +
Sbjct: 61  EFVRTLREGSMNIPVIMLTAMNTFAHKKEGYASGIDDYMTKPIQYEELEWHIEALLRRAR 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++N NR   G + +  D    + +G   PL  +E  +L   ++       K Q+   ++G
Sbjct: 121 IANDNRITVGGLVLDRDSMSAKYEGTDIPLTAKEFELLYKFLSYPDVVFTKQQLMDELWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +D   + N +++++S+LR K  +   F+ V + R LGY
Sbjct: 181 -YDTESDYNTIKTYVSRLRSKFSHCHEFELV-ALRGLGY 217


>gi|62179752|ref|YP_216169.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|73621399|sp|Q57QC3|PHOP_SALCH RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|62127385|gb|AAX65088.1| response regulator in two-component regulatory system with PhoQ,
           transcribes genes expressed under low Mg+ concentration
           (OmpR family) [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|219523861|gb|ACL14893.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
 gi|322714222|gb|EFZ05793.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 224

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQDSGHQVDATEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 63  LIRRWRSSDISLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 219


>gi|120556645|ref|YP_960996.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120326494|gb|ABM20809.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 226

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 15/192 (7%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGV 95
            + +S   D+  ++  L   G   L + + +RA  +Q P++ +S    +   ++    G 
Sbjct: 38  MMAASEEYDIMIVDRML--PGMDGLSIIKTVRATGNQTPVLILSALGDVDDRVEGLRGGG 95

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPL 149
           DD + KP    E+LAR+ ++ RR   +   AET  +   +D       R  +  G+   +
Sbjct: 96  DDYLTKPFSFTELLARIESLIRR---NRQAAETETVLKVADLEMDLLARTVKRAGQNIDV 152

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
             RE R+LEYLM N G+ V +T +   ++   FD   + NV++ HIS+LR K+  +    
Sbjct: 153 QPREFRLLEYLMRNAGQVVTRTMLLEKVWDYHFDP--QTNVIDVHISRLRAKIDKEFDTP 210

Query: 209 PVDSKRFLGYSI 220
            + + R  GY +
Sbjct: 211 LLQTVRGAGYML 222


>gi|323705815|ref|ZP_08117387.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534811|gb|EGB24590.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 224

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD   ++D  +     +G +++ F + E    L +  ++    +   ++  G   
Sbjct: 4   LIYIVDDDKNIRDLMVKYVEKEGYTVKSFENAE--AVLDNFEKDKPDMLILDIMMPGMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR  S VP+I +S        +   + G DD + KP   RE++AR+ +++RR+K
Sbjct: 62  YELCRQIRKKSDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVK 121

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   N+      I +  D R     GE       E  ++++L  N  K   + Q+   ++
Sbjct: 122 MPKRNDEIRIKDIVIVPDERKVIYNGEEIGFTSMEFELIQFLAQNANKAFTREQLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
             +D   E   V+  + ++RKKL++
Sbjct: 182 K-YDSFTETRAVDDMVKRIRKKLQS 205


>gi|194367131|ref|YP_002029741.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194349935|gb|ACF53058.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 231

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR +  ++   + G  
Sbjct: 73  TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRARGQASEVVQIGGF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +  +      + GE   LP RE R+LE L+   G+ V K +I + ++G FD+    N +E
Sbjct: 133 QFDNAAHRVSLDGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFG-FDDEAGPNAIE 191

Query: 192 SHISKLRKKL 201
            +I +LRKKL
Sbjct: 192 LYIGRLRKKL 201


>gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51]
 gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  S VP+I ++   S+   +   DSG +D + KP    E+LAR+    R    
Sbjct: 67  EVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAP 126

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S        + + +D R   ++G+   L +RE  +L +L+ N+G  +++  +   ++G
Sbjct: 127 LSSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD A + N V+ +I  LR K+        + + R +GY I
Sbjct: 187 -FDFAGDTNAVDVYIRFLRGKIDEVFNLKFIHTVRGVGYVI 226


>gi|288957332|ref|YP_003447673.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288909640|dbj|BAI71129.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 260

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 3/160 (1%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L   +RA +   P++ ++    +   +   + G DD + KP    E++AR+ A+ RR 
Sbjct: 60  LTLLSALRARADTTPVLVLTARDGVDDRVRGLNLGADDYLVKPFALEELVARIRALLRRP 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +     + G +   SD R   V G    L RRE   LE L+   G+ V+KT + + +Y
Sbjct: 120 GAALGLVLQQGNVAFDSDARLASVAGRPLDLSRRELDALELLLRRAGRVVSKTALENGLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G F E +  N VE  I +LRK+L+       V + R +GY
Sbjct: 180 G-FGEEIGSNAVEVLIHRLRKRLQAAGATAGVQTLRGIGY 218


>gi|300024305|ref|YP_003756916.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526126|gb|ADJ24595.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 221

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 83/151 (54%), Gaps = 8/151 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETG 129
            +P++ ++   +    ++  D+G DD + KP    E++ARV ++ RR  V +  A    G
Sbjct: 72  MMPVLILTARGAWPERVEGIDAGADDYLAKPFQLEELMARVRSLIRR-SVGHGSAILTAG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P+ + +      + G   P+   E R++ YLM ++G+ V  T++   +YG  D+A + N 
Sbjct: 131 PLALDTRQMRVVLDGAPVPVSPLEYRLIGYLMHHKGRVVPPTELIEHLYG-DDDARDANA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E+ +++LR+    KLG + ++++R  GY +
Sbjct: 190 LEAVVTRLRR----KLGQETIETRRGFGYMV 216


>gi|192359567|ref|YP_001983303.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190685732|gb|ACE83410.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 220

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 2/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  SQVP+I  +        L   + G DD + KP   RE++ARV A+ RR +
Sbjct: 60  LSVCREVRKQSQVPIIMTTAKVEEIDRLLGLEVGADDYICKPFSPREVVARVKAVLRRSQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +  A+   + +  +      QG+   L   E RILE L A++ K V++  +    Y  
Sbjct: 120 APSG-ADNSILHLDKEAMQVHHQGQSIELTAIEFRILETLFAHKHKVVSRDLLQKNAYT- 177

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               V +  ++SHI+KLRKKL+     + + S   +GY +
Sbjct: 178 DHRVVSDRTMDSHITKLRKKLQQIHPQEIIHSVYGVGYRL 217


>gi|182625941|ref|ZP_02953705.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177908748|gb|EDT71255.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 226

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP+I ++   S    L   + G DD V KP + + +LAR+A+I +R   S
Sbjct: 65  ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ET       ++      +   + EV  L + E +IL  L+ N+GK V++  I  A+
Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFKDEVEELTKNESKILNILIRNKGKIVSRDNIIKAL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   +E +++N +  ++++LR+K+        + +KR  GY
Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223


>gi|319424525|gb|ADV52599.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 231

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 8/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129
           P++ ++   S Q  ++  D+G DD + KP H +E++AR+ A+ RR   S  +A      G
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRR---SAGKASPLVYNG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  + +   +     E+  L   E ++ E+LM ++G+  +KT +   IY   D  ++ NV
Sbjct: 131 PFSLNTSSLEIRKGDELINLSGSEYKLFEFLMLHQGEVKSKTVLTEHIYDQ-DFDLDSNV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E  I +LRKKL     ++ +++ R  GY +
Sbjct: 190 IEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|154484836|ref|ZP_02027284.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC
           27560]
 gi|149733789|gb|EDM49908.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC
           27560]
          Length = 236

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 83  AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP++E  +L  L A+ G+   K Q+   ++G   EA + 
Sbjct: 143 IGSTEFDYDAMTVTTDKERLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 201

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++ ++   F+ V + R +GY +
Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233


>gi|126666867|ref|ZP_01737843.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinobacter sp. ELB17]
 gi|126628583|gb|EAZ99204.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinobacter sp. ELB17]
          Length = 228

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 11/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R  + +P+I ++ +      +  F+ G DD ++KP + RE++AR+ A+ RR+ 
Sbjct: 62  LDVLRQLRVSAHLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRRIA 121

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++    G +R+  D R     G    L   E  +L+ L+A+ G  V KT +  
Sbjct: 122 WDQKADLDDSRSYGDLRLEPDHRRVRQNGTPLDLTATEYEVLQVLLAHAGSVVRKTDLMQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYS 219
              G   E  +   ++ HIS LRKKL N+   +P  +++ R LGYS
Sbjct: 182 WALGRRLETYDRT-LDMHISNLRKKLGNE---EPPRIETVRGLGYS 223


>gi|104780529|ref|YP_607027.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95109516|emb|CAK14217.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 231

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 7/163 (4%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L + R +R     P++ ++        +   D G DD V KP+  R +LAR+
Sbjct: 57  LMLPGEDGLSICRRVRGQYAGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARI 116

Query: 113 AAIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            A+ RR +    R +   GP+ + S  R+  + G++  L   E  +L  L +N G+ +++
Sbjct: 117 TALLRRSEAPERRQDLTFGPLHIDSRQREARLGGQLIELTGAEFDLLWLLASNAGRVLSR 176

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            +IF+++ G+  +  ++  ++  ISK+R     K+G DP+  +
Sbjct: 177 EEIFTSLRGVGYDG-QDRSIDVRISKIRP----KIGDDPITPR 214


>gi|311029642|ref|ZP_07707732.1| DNA-binding response regulator [Bacillus sp. m3-13]
          Length = 230

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 20/172 (11%)

Query: 41  SAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           S R D+  I+  L G  GE +L   +I+   S VP+I IS     Q+ +    +G DD +
Sbjct: 46  SERWDMVLIDLMLPGLSGEDIL---KIVTKESDVPIIIISAKLETQSKIAALRAGADDYI 102

Query: 100 NKPIHHREILARVAAIYRRLK----VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
            KP    E+ AR+ +  RR +    VS  N      I +  D +   V G V  L  RE 
Sbjct: 103 TKPFDIEEVSARIDSCLRRYRDIPSVSITNLMSNKDIVLDPDAKIVTVNGNVLKLTAREY 162

Query: 155 RILEYLMANRGKRVAKTQIFSAI-----YGLFDEAVEENVVESHISKLRKKL 201
            IL  LM++  K   K  +F ++     YG      ++N +  H+S +R KL
Sbjct: 163 EILLLLMSSPNKVFTKANLFESVWNEPFYG------DDNTINVHLSNIRNKL 208


>gi|294139273|ref|YP_003555251.1| DNA-binding response regulator [Shewanella violacea DSS12]
 gi|293325742|dbj|BAJ00473.1| DNA-binding response regulator [Shewanella violacea DSS12]
          Length = 224

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 82/154 (53%), Gaps = 17/154 (11%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P+I ++        ++ F++G DD + KP H +E+LAR+ A+ +R   ++ +A   P +
Sbjct: 73  TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLARIHALIQR---AHGKASL-PTK 128

Query: 133 VFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             S        + +   V+ + F L   E ++L+  + +  K ++K+Q+   +Y  FD+ 
Sbjct: 129 ELSFSGVVLDENQQSVTVEDKNFELTAMEFKLLKIFLMSPKKLLSKSQLTEKLYQ-FDDE 187

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            E NVVE +++ LRK    KLG   ++++R  GY
Sbjct: 188 KESNVVEVYVTHLRK----KLGKTAIETRRGQGY 217


>gi|291535098|emb|CBL08210.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 232

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 4/146 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR+  
Sbjct: 65  EVCREIRETSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRRIGK 124

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +    G I +        V G    L  +E  +L Y M N G  +++ +I + ++
Sbjct: 125 APEEGKLLSIGGIVIDQTAHTVTVDGRQIELSFKEFELLTYFMENEGIALSREKILNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK 204
             +D   +   +++H+ KLR K+  K
Sbjct: 185 N-YDYFGDARTIDTHVKKLRAKIGEK 209


>gi|293365220|ref|ZP_06611937.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|306825415|ref|ZP_07458755.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|307703759|ref|ZP_07640700.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|315612983|ref|ZP_07887894.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
 gi|322374486|ref|ZP_08049000.1| DNA-binding response regulator CiaR [Streptococcus sp. C300]
 gi|291316670|gb|EFE57106.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|304432353|gb|EFM35329.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|307622594|gb|EFO01590.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|315315093|gb|EFU63134.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
 gi|321279986|gb|EFX57025.1| DNA-binding response regulator CiaR [Streptococcus sp. C300]
          Length = 224

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G I V     + +V+     L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGDIVVNLSTNEVKVEDTPVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  ++G FD     +VVE ++SK+RKKL+     + 
Sbjct: 151 LGKEFELLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTAFAEN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|238028833|ref|YP_002913064.1| DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237878027|gb|ACR30360.1| DNA-binding response regulator [Burkholderia glumae BGR1]
          Length = 225

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 13/146 (8%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   +    +G DD + KP    E+ AR+  + RR + S  ++ET   
Sbjct: 73  RTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMTARLEVLLRRSQASPAQSETTLE 132

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            GP+ +    R     G    L   E R+LEY+M N G+ + +T +F A++G  FD    
Sbjct: 133 VGPLALDLIARKATRDGAEIALLPTEYRVLEYMMRNAGQTITRTMLFEAVWGYHFDPGT- 191

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDS 212
            N+++ H+ +LR+K+      DP D+
Sbjct: 192 -NLIDVHMGRLRRKI------DPPDA 210


>gi|210618151|ref|ZP_03291916.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
 gi|210148975|gb|EEA79984.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
          Length = 223

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 19/215 (8%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L + GY     +DG  LEG +  +FE+   S    D+   +      G  V E   IIR 
Sbjct: 22  LTEAGYRVTLANDG--LEGLS--QFEKQYFSLILLDIMMPKI----DGYAVCE---IIRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSN-NRA 126
           +S +P+I ++     +  +  F+   DD + KP   + +L R+ A+ RR   KV N N  
Sbjct: 71  NSDIPIIMLTAMDEEEAQVKAFELQADDYITKPFSLKLVLMRIEAVLRRTKEKVENHNIF 130

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            +  I++ ++    EV G+   L + E  ILE  M +R + + +  + + ++G +D   +
Sbjct: 131 ISHGIKLDTNRHTVEVNGKEINLTQLEFDILEVFMKHRNQVLTRDNLINQVWG-YDFTGD 189

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  V  H+  LR+    KL  D + + R +GY  +
Sbjct: 190 EKAVNIHVMNLRR----KLDIDCIQTVRGVGYKFE 220


>gi|77412131|ref|ZP_00788455.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77161838|gb|EAO72825.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
          Length = 184

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R+  A  + P+I ++        ++  D G DD + KP    E+LAR+    R+   +
Sbjct: 23  LKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSSLI 82

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N+   G IR+ +D  + E +     L  +E  ++E  M N  + + K Q+ S ++G  
Sbjct: 83  RANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWGPS 142

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           D + E N +E  IS LRKKLR  K   + + +K F GYS++
Sbjct: 143 DNS-EYNQLEVFISFLRKKLRFLKADIEIITTKGF-GYSLE 181


>gi|254501423|ref|ZP_05113574.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437494|gb|EEE44173.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 227

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 33/212 (15%)

Query: 37  WLQSSAREDVSAIEAFL---------IGKGEKVLELPRIIR-------------AHSQVP 74
           W+    RE+   ++ F          +G+   VL L R++              +    P
Sbjct: 15  WVAGGLREEGHVVDHFTDGKEALIAAMGQDYDVLILDRMVSGLDGLSVLKSLRASEDPTP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134
            + ++    +   ++ FD+G DD + KP    E+ ARV A+ RR + SN  +   P  + 
Sbjct: 75  ALFLTALGEVDARVEGFDAGGDDYLTKPFAFVELSARVNALGRR-RDSNGTSTIEPTTLR 133

Query: 135 SD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
                     R  E QG+V  L  +E ++LEY M   G+ V +T +   ++ + FD    
Sbjct: 134 YGVLSLDLLARRCERQGQVIDLMAKEFKLLEYFMRRPGRLVTRTMLLEQVWDMSFDPTT- 192

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +VVE+HIS+LR K+      + + ++R  GY
Sbjct: 193 -SVVETHISRLRSKIDKPFDDELIRTRRGEGY 223


>gi|153937909|ref|YP_001389684.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152933805|gb|ABS39303.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295317774|gb|ADF98151.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S++P+I IS   S    +   ++G DD + KP +   I+A++ +  RR      
Sbjct: 66  RKIRQESKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K+     E   ++ + D  + E + E   + ++E  +LEYLM    K V +  +   I+
Sbjct: 126 SKIDEKIVELQGLKFYKDRSEIEFKDERVIITKKEGVLLEYLMKKYPKVVNRDFLLEKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
               E VEEN +  ++S++RK+L +KLG  D +++ R +GY ++
Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HKLGIEDGIETVRGVGYRLN 227


>gi|317495884|ref|ZP_07954247.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914061|gb|EFV35544.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 228

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 2/175 (1%)

Query: 48  AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107
           AI   ++ K + V  + ++       P++ ++    ++  +   DSG DD + KP   +E
Sbjct: 48  AILDVMMPKMDGVTVVKKLRENKKNTPVLLLTAKSEVEDKVYGLDSGADDYLTKPFVIKE 107

Query: 108 ILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           +LARV ++ RR    ++N  E G + +     +     +   L  +E +++E LM N G 
Sbjct: 108 LLARVRSMTRRQATFTSNVLELGNVSLSKYTFELSTDKDKVRLSNKEYQMMEMLMRNPGN 167

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   Q    I+G +D   E NVV  +IS LRKKL+       + + R +GY+++
Sbjct: 168 VIQTEQFLERIWG-YDSDSEINVVWVNISYLRKKLKALDANIQIKATRNVGYTLE 221


>gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI]
 gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 223

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 63  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 123 KQEQQGEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204


>gi|237742256|ref|ZP_04572737.1| two-component system response regulator [Fusobacterium sp. 4_1_13]
 gi|229429904|gb|EEO40116.1| two-component system response regulator [Fusobacterium sp. 4_1_13]
          Length = 233

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           DV  ++  L  K  K  E+ + +R  +  P+I I+   S+   ++  D G +D + KP  
Sbjct: 56  DVVLLDLMLPKKSGK--EVCQELRKLADTPIIVITAKDSVLDKVELLDLGANDYICKPFA 113

Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
             E+LAR+    R  + SNN+       I++    +   +  E   L + E  ILEY M 
Sbjct: 114 MEELLARIRVSTRNKENSNNKHFYLENEIKMDILAKKVFLNEEEIALTKTEFLILEYFMK 173

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           N+G   ++ +I   ++G +D   EE +V+ +I+ LRKK+ +K  +  + + R  GY
Sbjct: 174 NKGLSCSREKIIIDVWG-YDFDGEEKIVDVYINSLRKKIDSKSKY--IHTIRGFGY 226


>gi|221069766|ref|ZP_03545871.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714789|gb|EED70157.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 225

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 4/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR +  +++  + GP+
Sbjct: 74  LPVLILTAADSIEERVQGLDYGADDYMAKPFALSELEARVRALTRRGMGGASSTIKHGPL 133

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
                GR   + G++  L  RE  +LE L+   G+ V+K Q+   +   + E V  N +E
Sbjct: 134 VYDQTGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLCE-WGEEVSNNAIE 192

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +I +LRKK+    G   + + R LGY ++
Sbjct: 193 VYIHRLRKKIEK--GPIRIATVRGLGYCLE 220


>gi|321314045|ref|YP_004206332.1| two-component response regulator YclK [Bacillus subtilis BSn5]
 gi|320020319|gb|ADV95305.1| two-component response regulator (YclK) [Bacillus subtilis BSn5]
          Length = 227

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 19/197 (9%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           K+G+ A F  DG  LEG+     E W       D+  ++  L       + + R IR  S
Sbjct: 22  KEGFEAEFVHDG--LEGYQRFTEENW-------DLIILDIML--PSMDGVTICRKIRETS 70

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNR 125
            VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR K      +  + 
Sbjct: 71  TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKATGKAVIDEDM 130

Query: 126 AETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            ET    +    R+  + GE V  L  +E  +L YL+ N+ +  ++ Q+   ++G +   
Sbjct: 131 IETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNQRQVFSREQLLEQVWG-YQFY 189

Query: 185 VEENVVESHISKLRKKL 201
            +E  V+ HI +LRKKL
Sbjct: 190 GDERTVDVHIKRLRKKL 206


>gi|262281227|ref|ZP_06059009.1| two-component system DNA-binding response regulator [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257458|gb|EEY76194.1| two-component system DNA-binding response regulator [Acinetobacter
           calcoaceticus RUH2202]
          Length = 224

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 11/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  +  P++ IS    LQ  +D  ++G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  MQVLKQIRQRAATPVLIISARDQLQNRVDGLNNGADDYLIKPYEFDELLARIHALLRRSG 120

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V    A      ++G + +  +      +G+   L  RE  IL  LM++  K  +K  + 
Sbjct: 121 VEAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLE 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y  FD  V  N +E ++  LR     KLG D + + R LGY +
Sbjct: 181 DKLYD-FDSDVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 221


>gi|228992299|ref|ZP_04152230.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228998353|ref|ZP_04157945.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229005836|ref|ZP_04163531.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228755416|gb|EEM04766.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228761398|gb|EEM10352.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228767324|gb|EEM15956.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 225

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENALSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G +D   ++  V++HI KLR KL +K
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209


>gi|218129870|ref|ZP_03458674.1| hypothetical protein BACEGG_01451 [Bacteroides eggerthii DSM 20697]
 gi|317475797|ref|ZP_07935054.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|217987980|gb|EEC54305.1| hypothetical protein BACEGG_01451 [Bacteroides eggerthii DSM 20697]
 gi|316907957|gb|EFV29654.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 225

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 55  GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G G  +L EL R+ R  S   ++ IS   SL   +D  + G DD + KP H  E+ AR+ 
Sbjct: 57  GSGLDLLRELKRLHRTDS---VLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARIK 113

Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++ RR +   +   T G + ++ D R  EV G    L R+E  +L Y + N  + + K  
Sbjct: 114 SLIRRRQAQGDVTVTVGNLLLYPDKRQAEVGGVPLQLNRKEFDLLYYFVVNVNRVINKMS 173

Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
           +  +++G   D+A   + + S +  LRKKL+ 
Sbjct: 174 LAESVWGDNIDQADSLDFIYSQVKNLRKKLKQ 205


>gi|295836164|ref|ZP_06823097.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
 gi|197695260|gb|EDY42193.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
          Length = 228

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++    +++ +   + G DD V KP   RE+LAR+ A+ RR     +  
Sbjct: 71  IRTRSAVPVIMVTARADVRSRIHGLNLGADDYVVKPYDTRELLARIHAVARRTHTGPSEP 130

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            T   GP+R+  + R+  V GE   L R+E  +L  L    G    + QI S ++    E
Sbjct: 131 GTTALGPVRLTPETREVSVNGEPVQLTRKEFDLLALLALRPGVVYRREQIISEVWRTSWE 190

Query: 184 AVEENVVESHISKLRKKL 201
                 +E HI+ LR K+
Sbjct: 191 GTGRT-LEVHIASLRAKI 207


>gi|171059687|ref|YP_001792036.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170777132|gb|ACB35271.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 221

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
            P++ ++   +++  +   D G DD V KP+   E+ AR+ A+ RR   +V +N    G 
Sbjct: 73  TPVLVLTARAAVRDRVHCLDLGADDYVVKPVDLDELAARLRALVRRAHGQVEDN-LRVGE 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    RD   +GE   L  RE  +L  L+ N G+ + + QI   +Y  +   VE N +
Sbjct: 132 VELRPGSRDVFFRGERIALAVREFDLLHALLLNAGRVLTRDQIEQHLYS-WGREVESNAI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E HI  LRKKL  +L    +++ R +GY I
Sbjct: 191 EVHIHHLRKKLAPEL----IETVRGVGYMI 216


>gi|288574755|ref|ZP_06393112.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570496|gb|EFC92053.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 230

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P++ IS   ++   +  F+ G DD V  P   REI+ARV ++ RR     +R      R
Sbjct: 77  LPILIISANKTVDDLVAMFERGADDYVASPCDGREIIARVHSLIRR-SAQCHRPLLTCGR 135

Query: 133 VFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +  D   R+ +V G   PL RRE  ILE LM +  +  ++ +I S ++    +    NVV
Sbjct: 136 LILDPVARECKVDGTSVPLRRREFDILEILMRHDNQVFSRERIISEVWQKEYDGT-SNVV 194

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + HI  LR KLR       V + R +GY +  +
Sbjct: 195 DVHIKYLRDKLREHKMDSIVVTVRGVGYKVQCS 227


>gi|224541825|ref|ZP_03682364.1| hypothetical protein CATMIT_00997 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525248|gb|EEF94353.1| hypothetical protein CATMIT_00997 [Catenibacterium mitsuokai DSM
           15897]
          Length = 236

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 25  SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           +++G+++L       +   +D+  +   ++  G    E  + IR    +P+I IS     
Sbjct: 47  AVDGYDAL-------NKVNQDIDMVLLDIMMPGMDGYETCKKIREKYDMPIIFISALSET 99

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG 144
              LD +  G DD + KP     + A+  AI  R K    + +   I + +      V G
Sbjct: 100 DNMLDGYHVGADDYITKPFKPSVLYAKCQAILNRSK-KTKKEDKEIIWLDASKHLMYVDG 158

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           E   LP +E  ++E  + N+ +   ++QI + ++G +D   +   V+++I KLRKKL
Sbjct: 159 EPVALPNKEYLLMELFLNNKNQLFTRSQILNKVWG-YDYYGDGRAVDTYIKKLRKKL 214


>gi|88858419|ref|ZP_01133061.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas tunicata
           D2]
 gi|88820036|gb|EAR29849.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas tunicata
           D2]
          Length = 227

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 6/162 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ +++R     P+I ++        +   + G DD + KP +HRE+LARV AI RR++ 
Sbjct: 61  EVLKLLRQQKLTPVIMLTARGEDFDRIFGLELGADDYLAKPFNHRELLARVKAITRRIEH 120

Query: 121 -VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + N+ +      I V +  R+    G    L   E  IL  L+ N G+ ++K QI   
Sbjct: 121 ITAANKTQNLLWHDIEVKTQSREVYAAGHALLLTGTEYEILHLLLKNAGEIISKEQISEQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + G    A + + ++ H+S +RKK+   +  + + + R  GY
Sbjct: 181 VLGRRLAAFDRS-IDMHVSNIRKKIAEHISDERIKTIRGTGY 221


>gi|228920111|ref|ZP_04083460.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839567|gb|EEM84859.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 218

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE+  L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEADGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8]
 gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8]
          Length = 247

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  L   DG           EE L+ +  EDV      ++  G    EL R IR+
Sbjct: 31  LSKEGYEVLKAYDG-----------EEALKIANDEDVDMFIVDIMLPGIDGFELVRKIRS 79

Query: 70  ---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
              +   P+I +S        +   + G DD + KP   RE+LARV AI+RRL  +    
Sbjct: 80  MEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRLSTATQSK 139

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRVAKTQIFSAI 177
           E  P ++ +  +D E+  E + +  R +++         L +L  N GK  ++  +   +
Sbjct: 140 EERPKKIIA--KDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDVLLDKL 197

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +G +D   +   V+ HI +LR K+      DP + K
Sbjct: 198 WG-YDYYGDTRTVDVHIRRLRTKIEE----DPSNPK 228


>gi|154246206|ref|YP_001417164.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160291|gb|ABS67507.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 221

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 6/168 (3%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  VL   R  R   + P++ ++    +   +   D G DD V+KP    E  ARV A
Sbjct: 57  GSGYDVLRAIR--RNGLKTPVMILTARDHVSEKVKALDLGADDYVHKPFALAEFEARVRA 114

Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR   VS+   E GP++  +  +   ++G    L RRE  +L  L+   GK V K ++
Sbjct: 115 LVRRGFGVSDVVLEFGPLQFDTAQQVARLEGSPLDLRRRELAVLHLLLLQAGKLVPKARL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S ++GL D+AV  N +E +I++LRKKL    G   + + R LGY ++
Sbjct: 175 ISEVFGL-DDAVGPNALELYIARLRKKL--GAGGLRIRTVRGLGYMLE 219


>gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 90/167 (53%), Gaps = 8/167 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +R  S  VP++ ++    +   +   D+G DD + KP   +E+++R+ AI+RR+
Sbjct: 62  IQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRI 121

Query: 120 KVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    +AE+     G + V ++ R+  + G    L  +E  +L +L  +RGK +++ Q+ 
Sbjct: 122 QTLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             ++  +    +  +V+ HIS LR K+ +N    + + + R +GY +
Sbjct: 182 HGVWD-YHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227


>gi|168334087|ref|ZP_02692303.1| two-component system response regulator [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 227

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 8/144 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           IR+ S VP+I +S   S    ++    G DD + KP    E++ RV AI+RR+ +     
Sbjct: 66  IRSKSNVPIIIVSAKDSEIDRINGITMGADDYLIKPFAPMELVVRVGAIFRRMSLQSSNQ 125

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           SNN  E   G I++ +  ++    GE F L   E  +L Y+ AN+ + V++ ++   ++ 
Sbjct: 126 SNNADELTYGDIKLNTSFKEXFCNGEAFALTPTEFALLSYMFANQSRAVSREELLKNVWD 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
             + + +  V +  + +LRKKL N
Sbjct: 186 -SEFSNDTKVCDDVLKRLRKKLAN 208


>gi|1903396|gb|AAC45062.1| response regulator protein [Aeromonas jandaei]
          Length = 223

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 14/223 (6%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D A + D  I     DG  +E F   +      + +R D   ++  L        EL
Sbjct: 8   LVEDEASIADTLIYALQTDGFEVEWFTLGQQLLSRLAQSRPDFLILDVGLPDISG--FEL 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            + +R  +  PL+ ++        L   + G DD V KP   RE+ ARV  I RR   S 
Sbjct: 66  CKQVRTLTDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRR---SQ 122

Query: 124 NRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             A+  P+    + R     +G+   L R E  +L+ LM   G+  ++ Q+   ++   +
Sbjct: 123 PSAQPAPLLALDEERARIHFRGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWQDAE 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           E+++   V++HI  +R KLR     DP    + + R LGYS++
Sbjct: 183 ESLDRT-VDTHIKTIRAKLREH---DPEANLILTHRGLGYSLE 221


>gi|330963562|gb|EGH63822.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 224

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ + +R+ S VP+I I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 60  GRDGMDICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 119

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   ++  A  G ++V  +       G    L   E R+L     + G+  ++ Q+   
Sbjct: 120 RRTSATDPLAAKG-LQVDEEHYQASFNGVALDLTPVELRLLATFARSPGRVFSRDQLLDR 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SHI  LR+KL     G DP+ S   +GY ++ 
Sbjct: 179 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 224


>gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 219

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 2/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R     P+I I+        +   D G DD + KP    E+ AR+ A+ RR +
Sbjct: 61  LEICRRVRQVQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRR-Q 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  +   IR+  D     V G+     + E  +L  L  NR   + + QI + ++G 
Sbjct: 120 PHKDIIDINGIRIDIDAFKVTVDGKQLDFTKTEYDLLYLLATNRNHVLQREQILNHVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 179 YNSEVETNVVDVYIRYLRNKLKPFNKEKVIETVRGVGYVI 218


>gi|270308399|ref|YP_003330457.1| DNA-binding response regulator [Dehalococcoides sp. VS]
 gi|270154291|gb|ACZ62129.1| DNA-binding response regulator [Dehalococcoides sp. VS]
          Length = 222

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 28/223 (12%)

Query: 8   RALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           RAL + G++  +  DG+S E F  + EF+  +      D + IE            + R+
Sbjct: 18  RALGELGHVVEYACDGISGEYFARNGEFDLMILDIGLSDKNGIE------------VCRM 65

Query: 67  IRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNN 124
           +RA  + +P++ ++   +L++ +   D+G DD + KP  + E+ AR+ A+ RR  +V   
Sbjct: 66  VRAEGAALPILMLTAKDTLESKVKSLDAGADDYLCKPFAYSELFARIRALQRRASRVMAP 125

Query: 125 RAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             E G I  F +    EV+       L   E ++LEY +      + ++ +   ++G   
Sbjct: 126 VVEIGGI--FFNNLSHEVKNGNNEIKLTSAEFQMLEYFITMPNVLITRSMMEEHLWG--- 180

Query: 183 EAVEENVVESHISKLRKKLRNKLGFD----PVDSKRFLGYSID 221
              E     + I  L KKLR KLG+D    P+ + R  GY +D
Sbjct: 181 --AESISASNSIDSLIKKLRQKLGWDARTGPIKTLRGAGYRLD 221


>gi|90577545|ref|ZP_01233356.1| Response regulator [Vibrio angustum S14]
 gi|90440631|gb|EAS65811.1| Response regulator [Vibrio angustum S14]
          Length = 219

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 10/155 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
             P++ +S    L   +D  ++G DD + KP    E++ARV A  RR    N        
Sbjct: 72  NCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRR-STGNASPVIQAG 130

Query: 132 RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            +  D R  +V  +G++  L   E ++L YLM N  K +++T++   IY   FD   + N
Sbjct: 131 NLSLDTRTSKVTWEGQIIDLTALEFKVLSYLMHNTDKVISRTELVEHIYKQDFDR--DSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +E  I ++R+    K+G D + + R LGY I+ N
Sbjct: 189 TIEVFIGRIRR----KIGNDVIKTVRGLGYRINAN 219


>gi|94985622|ref|YP_604986.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94555903|gb|ABF45817.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 227

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           +A+ D+  ++  L G+    L++ + +RA    P+I ++        +   + G DD V 
Sbjct: 44  AAQPDLILLDVMLPGRSG--LDVLKTVRADGPTPVILVTARAEETDQIVGLELGADDYVV 101

Query: 101 KPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
           KP   RE++ARV A+ RR   +    E     GP+ V        V G+   L   E R+
Sbjct: 102 KPFRPREVMARVKAVLRRAHAALEGTERPLRVGPLEVDRRAARARVNGQPLGLTPAEFRL 161

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           L YL    G+   + ++ +A   L D    E VV++H++ +R+KL      + + + R +
Sbjct: 162 LAYLAQVPGRACTREELLAA--ALPDSDALERVVDAHLASVRRKLDAAQAGELLHTVRGV 219

Query: 217 GYSID 221
           GY ++
Sbjct: 220 GYRLE 224


>gi|302520129|ref|ZP_07272471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429024|gb|EFL00840.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 173

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 5/144 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I  +   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 9   EVCRQLRGRSNVPVIMGTAKDSEIEKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 68

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 69  PEEVTPTALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 128

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G  D   +   ++ H+ +LR K+
Sbjct: 129 WG-ADYVGDTKTLDVHVKRLRAKI 151


>gi|226314253|ref|YP_002774149.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097203|dbj|BAH45645.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 241

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 32/237 (13%)

Query: 11  VKDGYIALFGDDGVSL---------EGFNSLE----FEEWLQSSAREDVSAIEAFLIGKG 57
           +KD  I L  D+   L         EGF+S++     EE L +  R+    I   +    
Sbjct: 1   MKDAAILLVDDEQAILQLLETVLHKEGFHSIDKVKTSEEALCACERKSYDLIVLDVTLPN 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +E    IR  +  P++ +S   +    L  F  G DD V KP +  EI+AR+ A+ R
Sbjct: 61  MSGIEACPFIRRLTDAPILFLSARDTDFDKLTGFAVGGDDYVTKPFNPMEIVARIKALLR 120

Query: 118 RLKVSNNRAETGPIR-VFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R + ++    T P++ V+  GR        +  V+G+V P P    ++L +L  N  +  
Sbjct: 121 RTRKTSAAVPTAPVQGVYDFGRFQVHEAAGELCVEGKVIPCPSLVFQLLLFLCKNPNRIF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSI 220
           +K++++  ++G+ +   ++N +  HI ++R+++      DP   +     R LGY +
Sbjct: 181 SKSELYERVWGV-NSLRDDNTIMVHIHRIRERIEP----DPAQPEFLVNVRGLGYKM 232


>gi|319788971|ref|YP_004090286.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
 gi|315450838|gb|ADU24400.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 222

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++IDD   + D        +G S+    S      L ++ R D+  ++  L G  GE++
Sbjct: 4   ILIIDDDTHINDIVSKALRSEGYSVTSAYSGTEALLLLNNYRPDLILLDLMLPGLSGEEL 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L  PRI      +P+I +S    +   +D    G  D + KP    E+LAR+    R+  
Sbjct: 64  L--PRI----GDIPVIVVSAKADVTNKVDLLIGGAADYITKPFDMNELLARILVQLRKNA 117

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S+ R+      I +  D      +G    L R E  IL+ LM+N  + VAK  I   I 
Sbjct: 118 RSDERSFLTYHEITLDMDKHTISAKGNENKLTRTEYAILKLLMSNHDQVVAKLTILDRI- 176

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            L      E+ ++SHI  LRKKL+   G + + S   +G+ +
Sbjct: 177 SLDTPDCTEDSLKSHIYNLRKKLKALTGKEYISSVWGIGFML 218


>gi|161614534|ref|YP_001588499.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|238910949|ref|ZP_04654786.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|161363898|gb|ABX67666.1| hypothetical protein SPAB_02283 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|322616607|gb|EFY13516.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619878|gb|EFY16752.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622446|gb|EFY19291.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629436|gb|EFY26213.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632932|gb|EFY29675.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636823|gb|EFY33526.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641377|gb|EFY38016.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322645142|gb|EFY41671.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652305|gb|EFY48661.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655657|gb|EFY51959.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660962|gb|EFY57192.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322665452|gb|EFY61640.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667571|gb|EFY63732.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322677561|gb|EFY73625.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679774|gb|EFY75813.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|323193061|gb|EFZ78283.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199442|gb|EFZ84535.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203630|gb|EFZ88652.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208829|gb|EFZ93767.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209871|gb|EFZ94787.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217803|gb|EGA02518.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323226634|gb|EGA10834.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229606|gb|EGA13729.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323232831|gb|EGA16927.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240133|gb|EGA24177.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323254304|gb|EGA38121.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255570|gb|EGA39329.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323267000|gb|EGA50485.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272104|gb|EGA55518.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 223

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 218


>gi|325123266|gb|ADY82789.1| two-component system, OmpR family, response regulator
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 219

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 11/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 56  MQVLKQIRQRAATPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSG 115

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V    A      ++G + +  +      +G+   L  RE  IL  LM++  K  +K  + 
Sbjct: 116 VEAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILVPLMSHPNKIFSKANLE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y  FD  V  N +E ++  LR     KLG D + + R LGY +
Sbjct: 176 DKLYD-FDSDVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 216


>gi|269216812|ref|ZP_06160666.1| subtilin biosynthesis regulatory protein SpaR [Slackia exigua ATCC
           700122]
 gi|269129619|gb|EEZ60703.1| subtilin biosynthesis regulatory protein SpaR [Slackia exigua ATCC
           700122]
          Length = 244

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 15/212 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L +DG+     +D VS+ G     ++  L       +   E  L+G+          I
Sbjct: 43  RVLARDGHAVDAANDPVSVLGLALSRYDLILCDVMMPGMDGFE--LVGR----------I 90

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           R     P++ ++   + +  +     G DD + KP    E+ A+V A  RR  +V  +  
Sbjct: 91  RHLVDAPILFLTAKVAEEDAVFGLGLGADDYIRKPFGIVELRAKVGAHVRREERVRTHML 150

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G +RV  D R+    G   PL   E  + E L  +RG+ +++ QI    +G   +A  
Sbjct: 151 ALGDVRVDLDARELSAHGSPVPLTPTEYAVCELLAMHRGQVLSREQIRERAFGWASDA-G 209

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ +  H+S  R KLR +   DP+++ R +GY
Sbjct: 210 DDAISMHVSNARAKLR-RANVDPIETVRGMGY 240


>gi|255319016|ref|ZP_05360238.1| transcriptional regulatory protein QseB [Acinetobacter
           radioresistens SK82]
 gi|255303921|gb|EET83116.1| transcriptional regulatory protein QseB [Acinetobacter
           radioresistens SK82]
          Length = 221

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 10/177 (5%)

Query: 47  SAIEAFLIGKG---EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           SA++  L+  G   +  LEL R  R      P++ ++     +  ++  + G DD + KP
Sbjct: 43  SAVDLCLLDLGLPDQDGLELLRKWRQDQIHTPILVLTARIQTRQCIEALNLGADDYLTKP 102

Query: 103 IHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
               E++AR+ A+ RR +  S+N  +   + +  D ++   Q +   L RRE  +LE LM
Sbjct: 103 FELDELVARLHALTRRHRGFSSNVLQFEDLSLNQDTQEVFYQHQAIQLSRREYSLLETLM 162

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++  + +   Q+   +YG + +++E N +  HI  LR+    KL  D + + R +GY
Sbjct: 163 SHPNQILKNEQLLDKLYG-YQDSIESNALNVHIYHLRQ----KLNADFIQTIRGVGY 214


>gi|227502538|ref|ZP_03932587.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306835103|ref|ZP_07468144.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227076700|gb|EEI14663.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304569018|gb|EFM44542.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 236

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 24/195 (12%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF    +L+    L+  A  D+  +   L+  G    ++ + +RA S VP+I ++   +
Sbjct: 24  EGFEPIIALDGPSALEKFADNDIDIVLLDLMLPGMSGTDVCKQLRATSSVPVIMVTARDA 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---------GPIRVF 134
               +   + G DD V KP   RE++AR+ A+ RR    N++A              ++ 
Sbjct: 84  EIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR---GNDQASNADAAEGAEAEDEQIL 140

Query: 135 SDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           S GR   D E     V GE   +P +E  +LEYL+ N G+ + + Q+   I+G  D   +
Sbjct: 141 SGGRVKMDVERHIVTVAGEPVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRIWG-ADYVGD 199

Query: 187 ENVVESHISKLRKKL 201
              ++ HI +LR K+
Sbjct: 200 TKTLDVHIKRLRTKI 214


>gi|210620624|ref|ZP_03292148.1| hypothetical protein CLOHIR_00091 [Clostridium hiranonis DSM 13275]
 gi|210155233|gb|EEA86239.1| hypothetical protein CLOHIR_00091 [Clostridium hiranonis DSM 13275]
          Length = 231

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 2/150 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPI 131
           VP+I ++    +   +   DSG +D + KP   +E+LAR+  + R   VSN    T G +
Sbjct: 76  VPIIMLTAKSEVDDKVLGLDSGANDYLTKPFSAKELLARLRVLTREKSVSNTSIITVGNV 135

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            + +   +       F L  +E +++E  M N    V+  Q+   ++G +D  +E NVV 
Sbjct: 136 SLDTTTFEMYSPNGKFRLTNKEYQMMEIFMRNPKHIVSTEQLIEKVWG-YDSDMENNVVW 194

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +IS LRKKL +      + + R LGYS++
Sbjct: 195 VYISYLRKKLISLNANIIIKANRNLGYSLE 224


>gi|219668333|ref|YP_002458768.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538593|gb|ACL20332.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 225

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 6/153 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
             P++ ++    ++  ++  D G DD + KP    E+LAR+ AI RR  + + N    G 
Sbjct: 72  STPILMLTAKGEIEDRIEGLDHGADDYLTKPFAMGELLARIRAITRRKTEFAPNLLTVGN 131

Query: 131 IRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           +++  D  + E+ GE     L  +E +++E +M++  + ++  Q    I+G +D   E N
Sbjct: 132 LQL--DRANYELSGEKGSIRLGNKEYQMMEMMMSSPNRLISTEQFMERIWG-YDAEAEIN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           VV  +IS LRKKL        + + R LGY+++
Sbjct: 189 VVWVYISYLRKKLTALGSTVTIKASRGLGYTLE 221


>gi|323342107|ref|ZP_08082340.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464532|gb|EFY09725.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 224

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 5/133 (3%)

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--RAETGPIRVFSDGRDPEVQGE 145
           L+ FD+GVDD ++KP   RE+ AR+ A  RR+ +++   R E G I +  D     V   
Sbjct: 90  LEAFDAGVDDYLSKPFSPRELSARITAHLRRVDMNHELRRIEVGDIVINLDQHTVVVGSN 149

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L ++E  +L YL+ N    + + QI S I+  FD   +  +V+ HI KLR KL +  
Sbjct: 150 PVELTKKEFDLLIYLLQNENIVLTRDQILSEIWH-FDYDGDTRIVDVHIFKLRTKLED-- 206

Query: 206 GFDPVDSKRFLGY 218
               ++S R +GY
Sbjct: 207 SNVKINSLRGVGY 219


>gi|255322381|ref|ZP_05363527.1| two component transcriptional regulator, winged helix family
           [Campylobacter showae RM3277]
 gi|255300754|gb|EET80025.1| two component transcriptional regulator, winged helix family
           [Campylobacter showae RM3277]
          Length = 224

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 4/159 (2%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + I+   + +P++ I+    ++     F +G DD ++KP++ +E++ R+ A+ RR K
Sbjct: 62  ELTKQIKLLDESLPVLMITAKSGMEGMEKGFVTGADDYMSKPLNLKELILRINALLRRAK 121

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  R       +       ++ GE   L  +E  +L  L++N GK   + +I   I+G
Sbjct: 122 IASGKRLRFKNSELDYMALSLKIGGEAVELAPKEFYLLFLLLSNPGKIFTRLEIMQEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +D   +E  V++H+ KLR+KL     F+ + + R +GY
Sbjct: 182 -YDTDSDERAVDTHVKKLRRKLEGCTDFE-IATVRGIGY 218


>gi|222102367|ref|YP_002546508.1| two component response regulator [Agrobacterium vitis S4]
 gi|221739611|gb|ACM40313.1| two component response regulator [Agrobacterium vitis S4]
          Length = 225

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 4/163 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + +RA S + P++ ++    +   ++  ++G DD + KP    E++AR+ A+ RR 
Sbjct: 60  LNLVKSLRAASVRTPVLFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELVARINALVRRP 119

Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++  + +   G + +    R     G++  L  RE  +LE LM N G+ + KT     I
Sbjct: 120 PIAAEKTKLRVGDLEMDLVARTTSRAGQLIELLPREFSLLELLMRNEGRVLTKTMFLEKI 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  F+   + +VVE+HIS+LR K+        + + +  GY++
Sbjct: 180 WN-FNFDPQSSVVETHISRLRAKIDKPFSTSLLHTVKNTGYTL 221


>gi|188590225|ref|YP_001921389.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188500506|gb|ACD53642.1| putative lantibiotic biosynthesis regulatory protein [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 220

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 3/126 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD + KP    E+ ARV A  RR  +   N      ++ + + ++     E+ P  + 
Sbjct: 93  GGDDYITKPFGISELRARVNAHLRRECREKQNAFYISELKFYINAKEVYHDDELVPFTKS 152

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  I EYL  N G+  +K QI+ +I+G FD   +   +  HI  +R KL+ K+G + +++
Sbjct: 153 EYNICEYLALNHGQVFSKEQIYESIFG-FDGHSDTTAIVEHIKNIRSKLK-KIGINTIET 210

Query: 213 KRFLGY 218
              +GY
Sbjct: 211 VWGIGY 216


>gi|326386564|ref|ZP_08208186.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208879|gb|EGD59674.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 188

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 22/176 (12%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVD 96
           + + ++ DV  ++  L   G   L L + +RA     P++ +S   S    +    +G D
Sbjct: 1   MATDSQFDVVVLDRML--PGMDGLSLLKAMRAADVDTPVLMLSALGSTDDRVSGLTAGAD 58

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRAETG----------PIRVFSDGRDPEVQGEV 146
           D + KP    E+LARV A+ RR        ETG            RV   G      G  
Sbjct: 59  DYLGKPFSFAELLARVQALIRRRSGPAKAQETGLRCGDLELDRLTRVVKRG------GRK 112

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201
             L  RE R+LEYLM ++G+ V +T +  A++   FD     NV++ HIS+LR+K+
Sbjct: 113 IALQPREFRLLEYLMLHQGEVVTRTMLLEAVWDYHFDPGT--NVIDVHISRLRRKI 166


>gi|319892417|ref|YP_004149292.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162113|gb|ADV05656.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464480|gb|ADX76633.1| two-component response regulator ArlR [Staphylococcus
           pseudintermedius ED99]
          Length = 225

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R     P+I I+    +   +   D G DD + KP    E+LAR  A+ RR  
Sbjct: 61  LEVCKRLRTQKDTPIIMITAKGEIYDKVTGLDIGADDYIVKPFEIEELLARSRALIRRYS 120

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             N    N  E   I++         Q E   L + E  +L  L  N+ + + + QI   
Sbjct: 121 DENVSDTNVVEIDGIKIDKSAFHVTYQSEKLELTKTEFDLLLLLAENKNRVLHREQILDH 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 181 VWG-YESEVETNVVDVYIRYLRNKLKRIDKQKLIETVRGVGYVI 223


>gi|163842879|ref|YP_001627283.1| two component transcriptional regulator [Brucella suis ATCC 23445]
 gi|163673602|gb|ABY37713.1| two component transcriptional regulator, winged helix family
           [Brucella suis ATCC 23445]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 8/155 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR    +++  
Sbjct: 68  RSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEF 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y   FD   
Sbjct: 128 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + +LRK    K+G D +++ R  GY +
Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGRGYRM 216


>gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 227

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRALRQKSSVPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRGS 121

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + A     E G +R+  +     V G    LP +E  +LE  + N G+ + + Q+   
Sbjct: 122 EPDEAAPVTLEAGGVRMDVERHVVTVHGAAVALPLKEFELLEMFLRNTGRVLTRGQLIDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+ ++ G +P  + + R LGY  +
Sbjct: 182 VWG-SDYVGDTKTLDVHVKRLRAKIESEPG-NPRHLVTVRGLGYKFE 226


>gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 228

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 17/208 (8%)

Query: 24  VSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR--AHSQVPLIGI 78
           + LEGF    + +  E L  +   +   I   +I  G   +E+ R +R    SQVP++ +
Sbjct: 20  LELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGIEICRFLRDEEKSQVPILML 79

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFS 135
           +   S++  ++  + G DD + KP   RE++ARV A+ RR +V   R ET   G + +  
Sbjct: 80  TALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRNQVV--RQETLKYGDLVMNL 137

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESH 193
             R+   +GE   L  +E  +LE  M N G   ++ QI      L++   E   N+V+ +
Sbjct: 138 QTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDK---LWESGFEPRSNIVDVY 194

Query: 194 ISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +  LRKKL+   G+D  +++   +GY +
Sbjct: 195 VLYLRKKLK-PFGYDEKIETVHNIGYRL 221


>gi|195953641|ref|YP_002121931.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933253|gb|ACG57953.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 77/144 (53%), Gaps = 6/144 (4%)

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +I+R    +  +P+I ++     +  ++ F++G DD + KP   +E++AR+ A+  R 
Sbjct: 65  IAKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAVLNRY 124

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           K  ++ N+ +   + +  D  +  + G+   L + E RIL+YL+ N  K + + +I + +
Sbjct: 125 KKTITTNKLKVENLELDEDKMEVTLDGKPINLTKTEFRILKYLLENIDKIMTRDKIINML 184

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +  +   + +  V+ HI  LR KL
Sbjct: 185 WS-YGTDINDRTVDVHIKHLRDKL 207


>gi|298370202|ref|ZP_06981518.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281662|gb|EFI23151.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 226

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R     P+I ++        +   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 63  ELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQT 122

Query: 122 -SNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + AE+ P  V+ D         QG   PL + E R+L  L+   G+  ++ ++ +A+
Sbjct: 123 RPASEAESAP--VWHDDAPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAM 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           +G  +   + + + +HI  LR KLR   +  +P+ +   LGYS +
Sbjct: 181 FG-GNRPSDPHTINTHIRALRHKLRAAGVAGEPIRTHHGLGYSFN 224


>gi|298291237|ref|YP_003693176.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927748|gb|ADH88557.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 220

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D A++ DG  A     G++++   +    E    S+R D   ++  L  G G  V
Sbjct: 3   ILLVEDDAVLADGIRAGLWLAGLTVDAVGNCADAEAALGSSRFDAVVLDLMLPDGSGFDV 62

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L     +RA H   P+I ++        +   D G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  LA---TLRARHDATPVIVLTALDETPDRVRGLDGGADDFLGKPFDLDELAARLRALVRR- 118

Query: 120 KVSNNRAETGPI----RVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQI 173
                RA   P+     V  D     V  +  P+P  RRE  +L  LM   G   +K ++
Sbjct: 119 --GGGRAS--PLLTHGTVALDPATLSVSIDEVPVPVSRREFAVLSMLMERPGVIRSKGEL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +YG + E +E N VE +I  LR     KLG D +++ R LGY +
Sbjct: 175 EERLYG-WQEEIESNTVEVYIHNLRA----KLGRDLIETVRGLGYRL 216


>gi|190575791|ref|YP_001973636.1| putative two-component response regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190013713|emb|CAQ47348.1| putative two-component response regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR +  ++   + G  
Sbjct: 73  TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRARGQASEVVQIGGF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +  +      + GE   LP RE R+LE L+   G+ V K +I + ++G FD+    N +E
Sbjct: 133 QFDNAAHRVSLNGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFG-FDDEAGPNAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LRKKL
Sbjct: 192 LYVGRLRKKL 201


>gi|325263927|ref|ZP_08130660.1| DNA-binding response regulator DltR [Clostridium sp. D5]
 gi|324030965|gb|EGB92247.1| DNA-binding response regulator DltR [Clostridium sp. D5]
          Length = 227

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 14/158 (8%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130
           + P+I ++    L   L   D+G DD + KP    E+LAR   I RR  K+   R   G 
Sbjct: 72  ETPVIMLTARSELSDKLKGLDTGADDYLTKPFEMEELLARARVITRRQGKMETERPGFGD 131

Query: 131 IR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           I        +++     EVQ     L ++E +ILEYL+ N  + V + QI   ++G +D 
Sbjct: 132 ISLDLRTCILYNQDSGAEVQ-----LGKKEFQILEYLIKNSSQIVTREQIVQKLWG-YDC 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E N VE +IS  R+K++       + + R +GY ++
Sbjct: 186 NAEYNNVEVYISFTRRKMKFIECQARIKAVRGIGYRLE 223


>gi|320353761|ref|YP_004195100.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320122263|gb|ADW17809.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 223

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 17/191 (8%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           W++ + R D+  ++  L G+    +E+ + IR  S VP+I ++        L   + G D
Sbjct: 40  WVRGN-RPDLILLDLMLPGRDG--MEICKEIRTFSTVPIIMVTARIEEIDRLLGLELGAD 96

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPR 151
           D V KP   RE++ARV A+ RR           R +   +RV  DG   ++    F    
Sbjct: 97  DYVCKPFSPREVVARVKAVLRRTSARTPAPHGLRVDASTMRVSLDGHHLDLTAVEF---- 152

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPV 210
              ++L +L+A+ G+  ++ Q+   +Y      V +  ++SHI KLR+KL   + G + +
Sbjct: 153 ---KLLAFLLAHPGRIYSREQLMEGMYP-DQRIVNDRTIDSHIKKLRRKLDLARSGCNLI 208

Query: 211 DSKRFLGYSID 221
            S   +GY+ D
Sbjct: 209 RSVYGVGYTFD 219


>gi|325679778|ref|ZP_08159352.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324108593|gb|EGC02835.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 228

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 3/145 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R +R  S VP+I  S   +    ++ FD G DD + KP   +E+L+RV A+ RR  
Sbjct: 63  FEICRQLREASHVPVIFASARTAEDDRINSFDIGGDDYLQKPYSMKELLSRVNALMRRAY 122

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G +++ +  R     G    L +RE  +L  L  N+   V K ++ S ++
Sbjct: 123 GGEVDGSLGFGDVKINTASRTVIKGGRNVALAQREFDLLCCLCRNKNTAVPKDKLISEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
           G F E VE + +  HI  LR+KL +
Sbjct: 183 GAFSE-VEPSTLTVHIRWLREKLED 206


>gi|289423154|ref|ZP_06424969.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
 gi|289156485|gb|EFD05135.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
          Length = 231

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 16/173 (9%)

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL  IIR+   +  + +I ++     +  L+    G DD V KP   +E+ ARV  I +
Sbjct: 61  IELLNIIRSDEDYDDIAVIMLTAKNMEEDKLEGLTIGADDYVTKPFSIKELSARVKNILK 120

Query: 118 RL----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           R           K+ +N+ + G + +  D  +  ++  +  L  +E  IL+ L+ N+G+ 
Sbjct: 121 RYNKQDSNNKTNKIGSNKLKAGDLILELDRHEVYLRDRLIDLTVKEYGILKLLLENKGRV 180

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++  I   I+G +D   E   V+ HI  LRKKL     F  +D+ R LGY I
Sbjct: 181 ISREYILEKIWG-YDYFGETRTVDVHIRYLRKKLGEDENF--IDTIRGLGYKI 230


>gi|218134349|ref|ZP_03463153.1| hypothetical protein BACPEC_02242 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989734|gb|EEC55745.1| hypothetical protein BACPEC_02242 [Bacteroides pectinophilus ATCC
           43243]
          Length = 223

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 70  AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 129

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP++E  +L  L A+ G+   K Q+   ++G   EA + 
Sbjct: 130 IGSTEFDYDAMTVITDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 188

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++ ++   F+ V + R +GY +
Sbjct: 189 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 220


>gi|41407319|ref|NP_960155.1| hypothetical protein MAP1221 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395671|gb|AAS03538.1| hypothetical protein MAP_1221 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 219

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G   E     E  E L    R D+  ++  L G+     
Sbjct: 1   MLVVEDSETIREMVSEALTEVGYHTEARRDGERLEELLDGIRPDLVVLDVMLPGR--DGF 58

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L  +IR    + ++ I+    L   L   D G DD V KP    E+++RV A+ RR   
Sbjct: 59  ALIDVIRDWGDIGIVLITARDGLPDRLRGLDGGADDYVIKPFELAELVSRVGAVLRRRGR 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G + +          G    L   E R+L +L+  RG+ V+  QI + ++G  
Sbjct: 119 LPQVIQVGDVTLDPGAGVAARGGHRLDLTATELRVLTFLVEQRGRIVSAGQILNGVWGY- 177

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +A + N+V+ H+S LR+KL    G   + + R +GY +
Sbjct: 178 -DAYDPNLVQVHVSGLRRKLEAH-GPRILHTVRGIGYRL 214


>gi|322374762|ref|ZP_08049276.1| DNA-binding response regulator [Streptococcus sp. C300]
 gi|321280262|gb|EFX57301.1| DNA-binding response regulator [Streptococcus sp. C300]
          Length = 225

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E G + + +   D   QGEV  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYGGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +     +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGL 222


>gi|299144284|ref|ZP_07037364.1| DNA-binding response regulator VncR [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518769|gb|EFI42508.1| DNA-binding response regulator VncR [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 217

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S++P++ ++ +   +  +D F +  D  + KP     + ARV ++ ++  
Sbjct: 59  LEVLREIRKKSKLPILILTAFSDEEYKIDAFTNLADGYIEKPFSLPVLKARVDSLIKKNF 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   I V       ++ GE   +  +E  IL+YL+ N G+ + + QI   ++  
Sbjct: 119 GLIEKFEYKNIEVNFTSYTAKINGESIDINAKELEILKYLLDNEGQALTRMQIIDNVWKE 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + V++ +I +LRK    KLG D + + R +GY ++
Sbjct: 179 TEEIPYDRVIDVYIKELRK----KLGLDCITTIRNVGYKLE 215


>gi|300779924|ref|ZP_07089780.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534034|gb|EFK55093.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 233

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 11/148 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------- 119
           +RA S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR        
Sbjct: 68  LRATSDVPIIMVTARDTEIDKVVGLELGADDYVTKPYSTRELIARIRAVLRRRSDVADPP 127

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + S N  E G +R+  +     V  +  P+P +E  +LEYLM N G+ + + Q+   
Sbjct: 128 GEEESSENILEGGRVRLDVERHTVYVDDQPVPMPLKEFDLLEYLMRNAGRVLTRGQLIDR 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           I+G  D   +   ++ H+ +LR K+  +
Sbjct: 188 IWG-SDYVGDTKTLDVHVKRLRTKIEQE 214


>gi|255528289|ref|ZP_05395103.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508024|gb|EET84450.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 224

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 2/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
             P++ ++    ++  +   D+G DD ++KP    E+LARV A+ RR  + + N  + G 
Sbjct: 72  HTPILMLTAKAEIEDRIVGLDAGADDYLSKPFAMGELLARVRAMTRRKSEFTPNLVKVGN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +  +  +   +     L  +E ++LE LM+N    ++  Q    I+G +D   E NVV
Sbjct: 132 ISLNKENYELSNEKSSLRLGNKEFQMLEMLMSNPKCLISTEQFMERIWG-YDAEAEINVV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +IS LRKKL +      + + R +GY+++
Sbjct: 191 WVYISYLRKKLASLNANIKIKAGRGIGYTLE 221


>gi|254519605|ref|ZP_05131661.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913354|gb|EEH98555.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 3/141 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           L ++ ++    P+I ++    ++  +   D G DD + KP    E+LAR+ +I RR    
Sbjct: 63  LKQLRKSGISTPVIMLTAKSQIEDRVRGLDLGADDYLTKPFATEELLARLRSITRRKGNV 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++N    G I +  D  D +V  E   L  +E  I++Y M      V+K  + + ++G 
Sbjct: 123 VNDNILTYGDISLNLDTYDLDVNNENIRLTLKEFEIIKYFMERPKCVVSKDDLITKLWG- 181

Query: 181 FDEAVEENVVESHISKLRKKL 201
           FD  VE N +E +IS +RKKL
Sbjct: 182 FDSEVEYNNIEVYISFIRKKL 202


>gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 230

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 9/171 (5%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   L+L + +RA   QVP++ ++   S++  +     G DD + KP    E+LAR+ A+
Sbjct: 59  GMTGLDLCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEAL 118

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAK 170
            RR +    RA T  ++V     D E       G    L  +E   LE LM+  G+  ++
Sbjct: 119 LRRGREQRPRATT--LQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSR 176

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +I S ++G+ ++ +  NVV+ ++ +LR K+        + + R LGY +D
Sbjct: 177 ERILSNVWGMHEDPL-TNVVDVYVRRLRSKIDEGHPLALLKTVRGLGYRLD 226


>gi|33597212|ref|NP_884855.1| two-component response regulatory protein [Bordetella parapertussis
           12822]
 gi|33573639|emb|CAE37924.1| two-component response regulatory protein [Bordetella
           parapertussis]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA + V P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSVLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +     GR   V  +   L  RE  +LE L+A  G+ V+KTQ+   + 
Sbjct: 120 AGGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEILLARSGRMVSKTQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + EAV  N +E ++ +LRKKL    G   + + R LGY ++
Sbjct: 180 E-WGEAVSTNAIEVYVHRLRKKLEPS-GVKII-TVRGLGYCLE 219


>gi|317471402|ref|ZP_07930756.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901153|gb|EFV23113.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 226

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 9/150 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G++VL   R +R  S +P+I IS    + T +D    G DD + KP    E+ ARV +  
Sbjct: 60  GDQVL---RELRGFSNIPVIVISAKDIVGTKIDLLKLGADDYITKPFDLGEVEARVLSNL 116

Query: 117 RRLKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR   S  + +T   R   +  D +   + G+   L  +E  IL+ LM +  K   K  +
Sbjct: 117 RRQSSSKVKEQTLQYRDLVLSKDAKSVLLGGQDLELTAKEYAILQLLMEHPKKVYTKANL 176

Query: 174 FSAIYGLFDEAV-EENVVESHISKLRKKLR 202
           +  ++   DE + ++N V++HIS LR KL+
Sbjct: 177 YETVWE--DEYLGDDNAVKTHISNLRNKLK 204


>gi|229049779|ref|ZP_04194336.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229112534|ref|ZP_04242071.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228670914|gb|EEL26221.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228722692|gb|EEL74080.1| DNA-binding response regulator [Bacillus cereus AH676]
          Length = 220

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 57  EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 115

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  I + 
Sbjct: 116 CNQQKEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMILNQ 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 176 VWG-YNIVVNPNVVDLYIGYVRKKLKCEKKERYIQTIHGRGYSM 218


>gi|170755698|ref|YP_001779969.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120910|gb|ACA44746.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S++P+I IS   S    +   ++G DD + KP +   I+A++ +  RR      
Sbjct: 66  RKIRQESKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K+     E   ++ + D  + E + E   + ++E  +LEYLM    K V +  +   I+
Sbjct: 126 SKIDEKIVELQGLKFYKDRSEIEFKDERVIITKKEGILLEYLMKKYPKVVNRDFLLEKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
               E VEEN +  ++S++RK+L +KLG  D +++ R +GY ++
Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HKLGIEDGIETVRGVGYRLN 227


>gi|332531173|ref|ZP_08407086.1| two component transcriptional regulator, winged [Hylemonella
           gracilis ATCC 19624]
 gi|332039280|gb|EGI75693.1| two component transcriptional regulator, winged [Hylemonella
           gracilis ATCC 19624]
          Length = 239

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +RA  + +P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 62  LEVLQRLRARGASLPVLILTAADSVEDRVQGLDYGADDYMAKPFSLQELEARVRALTRRG 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L  ++     GP+     G    + G +  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 122 LGAASGLIRHGPLVYGQAGHVATIDGRLVELSARELGLLEVLLQRCGRLVSKDQLVDRLC 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 182 E-WGEEVSNNAIEVYIHRLRKKIEG--GPIRIATVRGLGYCLE 221


>gi|228477753|ref|ZP_04062382.1| DNA-binding response regulator VncR [Streptococcus salivarius
           SK126]
 gi|228250642|gb|EEK09853.1| DNA-binding response regulator VncR [Streptococcus salivarius
           SK126]
          Length = 217

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP++ ++ +   +  L  F    D  + KP     +  R+ AI+++L+
Sbjct: 60  LEVLKEIRKTSSVPVLMLTAFHDEEYKLTAFGELADGYLEKPFSLSLLKVRIEAIFKKLQ 119

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  R  T G  RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++ 
Sbjct: 120 PS--RVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215


>gi|168205726|ref|ZP_02631731.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170662782|gb|EDT15465.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 226

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP+I ++   S    L   + G DD V KP + + +LAR+A+I +R   S
Sbjct: 65  ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ET       ++      +     EV  L + E +IL  L+ N+GK V++  I  A+
Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFNDEVEELTKNESKILNILIRNKGKIVSRDNIIKAL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   +E +++N +  ++++LR+K+        + +KR  GY
Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223


>gi|118587757|ref|ZP_01545167.1| two component transcriptional regulator, winged helix family
           protein [Stappia aggregata IAM 12614]
 gi|118439379|gb|EAV46010.1| two component transcriptional regulator, winged helix family
           protein [Stappia aggregata IAM 12614]
          Length = 228

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 16/162 (9%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  +  P++ +S    +   +    +G DD + KP    E+LAR+ A+ RR K ++    
Sbjct: 69  RQGNHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELLARIEALARRPKSASQIET 128

Query: 128 TGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           T  +      R+    R  E +    PL  RE R+LEYLM N G+ V +T +   ++   
Sbjct: 129 TYTVGDLTLDRMAHSCRRGETE---IPLQPREFRLLEYLMQNAGQVVTRTMLLENVWEYH 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           FD   + NV++ HIS+LR K+    GFD   + + R  GY+I
Sbjct: 186 FDP--QTNVIDVHISRLRGKIDK--GFDTPLLHTIRGAGYTI 223


>gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis]
          Length = 245

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 20/143 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147
           G DD V KP    E++AR+ AI RR   +  + E  PI       +  D  D    G+  
Sbjct: 100 GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVTRAGQTI 156

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E ++L YLM N G+ ++K QI   ++  +D   +  +VES+IS LRKK+ +    
Sbjct: 157 DLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDDVTVT 215

Query: 208 DP----------VDSKRFLGYSI 220
           D           +++KR +GY I
Sbjct: 216 DEDGSTHKVTPLIETKRGIGYMI 238


>gi|15602297|ref|NP_245369.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720685|gb|AAK02516.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 231

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 115/224 (51%), Gaps = 16/224 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEK 59
           ++++D + +++  I+LF    ++ +G++ +E  ++ QS+ ++ V   +  L+     G  
Sbjct: 5   LVVEDESAIRE-MISLF----LTQQGYDIIEAADY-QSAVKKLVEKPQLILLDWMLPGRS 58

Query: 60  VLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            ++  + ++ H     +P+I ++     +  +   ++G DD + KP   + +LAR+ A+ 
Sbjct: 59  GIQFIQFLKKHEDTENIPVIMLTARSEEEDCITGLNTGADDYITKPFSPKILLARIEAML 118

Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR+ + S N  E   + +  +      Q  V  L   E ++L++LM +  K   + Q+  
Sbjct: 119 RRVYEQSQNSIEIDGLLLDQNALRVSYQKNVINLSSTEFKLLKFLMTHPEKVYTREQLLD 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            I+G  D  VE+  V+S+I +LRK L  + GFD  + + R  GY
Sbjct: 179 CIWG-NDIYVEDRTVDSYIRRLRKSL-EQYGFDRYIQTVRGAGY 220


>gi|226944540|ref|YP_002799613.1| Response regulator KdpE [Azotobacter vinelandii DJ]
 gi|226719467|gb|ACO78638.1| Response regulator KdpE [Azotobacter vinelandii DJ]
          Length = 232

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 93/209 (44%), Gaps = 21/209 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           +LV  GY  L  + G   EG         L + AR D+  ++  L     K  EL   +R
Sbjct: 24  SLVAHGYRVL--EAGCGREGLT-------LAAEARPDLLVLDLGLPDMDGK--ELLAELR 72

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             SQVP++ +S        +   D G +D V KP   RE+LARV  + RR         T
Sbjct: 73  RDSQVPVLVLSVRAGDGEKVLALDGGANDYVTKPFSIRELLARVRVLLRRPASPGQGPGT 132

Query: 129 ---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              GP+ V  D R  ++ G    L R+E  +L  L  + G+ V + Q+   I+G      
Sbjct: 133 LNCGPLAVDLDNRRVDLDGREIALTRKEYDVLAMLARHPGRIVTQQQLLRDIWG------ 186

Query: 186 EENVVESH-ISKLRKKLRNKLGFDPVDSK 213
             +V +SH +  +   LR KLG DP D +
Sbjct: 187 PTHVEDSHYLRVVVGHLRQKLGDDPADPR 215


>gi|221195593|ref|ZP_03568648.1| response regulator receiver protein [Atopobium rimae ATCC 49626]
 gi|221184780|gb|EEE17172.1| response regulator receiver protein [Atopobium rimae ATCC 49626]
          Length = 227

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 14/156 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124
           +P++ ++    L   ++  D+G DD + KP H  E+LAR+ A+ RR        L   + 
Sbjct: 73  IPILMLTAKSQLDDKVEGLDNGADDYLTKPFHTAELLARLRALGRRSSNFQDSVLHFGDL 132

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             +T    +  +       G+   L  +E RILEY++ + G+ V + Q+   I+G F+  
Sbjct: 133 SLDTSTATITCNS-----SGQSVRLSEKELRILEYMIGSHGRIVTRDQLAIKIWG-FESD 186

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E N VE ++S  RKKL        + + R LGY +
Sbjct: 187 AEYNNVEVYMSFTRKKLAFVGSKVEIKAVRGLGYEL 222


>gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 255

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 7/164 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++ R   QVP++ ++   S++  +    +G DD V KP    E++AR+  + RR   +
Sbjct: 89  LGQLRREIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGAA 148

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G +R+  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 149 QAARGGSVLAVGDLRLDEDSHEVTRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDRV 208

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+KL    G  P + ++R  GY I
Sbjct: 209 WS-YDFGGQANVVELYISYLRRKLEAGTGLPPMIHTRRGAGYLI 251


>gi|53802727|ref|YP_115492.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
           Bath]
 gi|53756488|gb|AAU90779.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
           Bath]
          Length = 232

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNRA 126
           +  +PLI ++     +  +   D G DD V KP   RE++AR+ A+ RR       + R 
Sbjct: 75  YGDIPLILVTARGEEEDKIRGLDVGADDYVTKPFSPRELIARIRAVLRRSNRQSKLDGRI 134

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           E G I + +D     +  E   L   E R++E+ + +  K  ++ Q+   ++G     +E
Sbjct: 135 EIGGILLDTDEHRLSIDDESVNLSPTEYRLMEFFLTHPSKVYSRAQLLDQVWG-RSAYIE 193

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E  V+ HI +LRK L      D + + R  GY
Sbjct: 194 ERTVDVHIRRLRKILSEHDREDMIQTVRGFGY 225


>gi|16764586|ref|NP_460201.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56413783|ref|YP_150858.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|168239138|ref|ZP_02664196.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194444063|ref|YP_002040487.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448565|ref|YP_002045233.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194471531|ref|ZP_03077515.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736162|ref|YP_002114238.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195874180|ref|ZP_02701035.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197251572|ref|YP_002146810.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197261891|ref|ZP_03161965.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362706|ref|YP_002142343.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198244282|ref|YP_002215904.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200390596|ref|ZP_03217207.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204930765|ref|ZP_03221638.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205357417|ref|ZP_02347547.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205357746|ref|ZP_02573078.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205358670|ref|ZP_02658171.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205359350|ref|ZP_02669237.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205360059|ref|ZP_02834338.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205360758|ref|ZP_02686229.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|207857262|ref|YP_002243913.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224584261|ref|YP_002638059.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|130127|sp|P14146|PHOP_SALTY RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|73621400|sp|Q5PMJ1|PHOP_SALPA RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|154264|gb|AAA27187.1| PhoP protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|154266|gb|AAA27188.1| phoP protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|7007369|emb|CAB75591.1| PhoP protein [Salmonella typhimurium]
 gi|16419749|gb|AAL20160.1| response regulator in two-component regulatory system with PhoQ
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56128040|gb|AAV77546.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194402726|gb|ACF62948.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406869|gb|ACF67088.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457895|gb|EDX46734.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711664|gb|ACF90885.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630373|gb|EDX48999.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094183|emb|CAR59687.1| transcriptional regulatory protein PhoP,regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197215275|gb|ACH52672.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240146|gb|EDY22766.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288154|gb|EDY27541.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197938798|gb|ACH76131.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603041|gb|EDZ01587.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320224|gb|EDZ05428.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205321841|gb|EDZ09680.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329802|gb|EDZ16566.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332740|gb|EDZ19504.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336749|gb|EDZ23513.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205341203|gb|EDZ27967.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347225|gb|EDZ33856.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709065|emb|CAR33398.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|219523857|gb|ACL14891.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
 gi|219523864|gb|ACL14894.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
 gi|219523866|gb|ACL14895.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi A]
 gi|219523868|gb|ACL14896.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
 gi|224468788|gb|ACN46618.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261246443|emb|CBG24253.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993010|gb|ACY87895.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157772|emb|CBW17265.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912219|dbj|BAJ36193.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320086328|emb|CBY96101.1| Response regulator mprA Mycobacterial persistence regulator A
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223849|gb|EFX48912.1| Transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322673635|gb|EFY69737.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322687247|gb|EFY83219.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323129501|gb|ADX16931.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323218886|gb|EGA03397.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323242880|gb|EGA26901.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246796|gb|EGA30766.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323259404|gb|EGA43040.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|326623652|gb|EGE29997.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|332988122|gb|AEF07105.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 224

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 63  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 219


>gi|291614947|ref|YP_003525104.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
 gi|291585059|gb|ADE12717.1| two component transcriptional regulator, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 224

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 4/151 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
           QVP+I ++   +    +   D G DD + KP    E+ ARV A+ RR +   N     G 
Sbjct: 73  QVPVIILTARDAEGDRVKGLDLGADDYMIKPFSLPELEARVRALIRRGQCGVNPVYSCGT 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +   S GR   + G    L  RE  +LE LM   G  V+K Q+   +Y   +EA   N +
Sbjct: 133 LTFDSVGRRASINGTTLELTTRELSVLEALMLRTGWVVSKEQLLERLYSYAEEA-SNNAI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E +I +LRKK+    G   + + R LGY I+
Sbjct: 192 EVYIHRLRKKI-EPAGV-TIRTIRGLGYVIN 220


>gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
          Length = 219

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 2/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR +
Sbjct: 61  LEICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  +   I +  +     V G    L + E  +L  L  N+   + + QI + ++G 
Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 179 YNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218


>gi|217076252|ref|YP_002333968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thermosipho africanus TCF52B]
 gi|217036105|gb|ACJ74627.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thermosipho africanus TCF52B]
          Length = 222

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 6/169 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           ++  G  + ELP I      + +I IS   S    +   + G DD V KP + RE++AR+
Sbjct: 54  MLPDGFSINELPDIKVNFPDLGVIIISARDSDNDKIYGLEIGADDYVAKPFNPREVVARI 113

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + +RR+  +N   + GP+ +F +    ++      +  +E  +L  L  N     ++ +
Sbjct: 114 KSYFRRVSKNNEYIKYGPLEIFCENYVVKLNNNEVEMTAKEFEVLCLLAKNPDYVFSREK 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I   ++   DE + + VV+ HIS     +RNKLG   + + R  GY  +
Sbjct: 174 ILDTVWE--DEFISDRVVDVHIS----NIRNKLGKSWIKTIRGAGYKFN 216


>gi|190576270|ref|YP_001974115.1| putative two-component system response regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014192|emb|CAQ47836.1| putative two-component system response regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 2/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L R +RA S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +
Sbjct: 68  VDLCRELRASSDVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVMAVLRRYR 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +          G+   L   E R+L  L+A  G+  A+ ++   +Y L
Sbjct: 128 PDPGARANGGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLY-L 186

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219
               V +  V+SH+  LR+KL +  +  +P+ S   +GYS
Sbjct: 187 DHRVVVDRTVDSHVRNLRRKLADAGMEGEPIRSVYGMGYS 226


>gi|148378274|ref|YP_001252815.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148287758|emb|CAL81824.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 235

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 84/159 (52%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR HS+VP+I IS   S    +   ++G DD + KP  +  +LA++  + RR+  S  + 
Sbjct: 70  IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 129

Query: 127 ETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +T  +++     +++    E +G    L + E  +L YL+ N  K V++  +   ++   
Sbjct: 130 DTDFLKIDDLILYTNKSMLEFKGRKTELSKNEFSLLLYLLKNINKIVSRDTLLEILWSDT 189

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  +++N +  ++++LRK+L      + +++KR  GY +
Sbjct: 190 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 227


>gi|303239291|ref|ZP_07325819.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302593077|gb|EFL62797.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 225

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 12/164 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++        L  FD G D+ + KP     ++ARV A+ RR    
Sbjct: 66  VCRQIRKSSRVPVIMLTARSDESDELFGFDLGADEYITKPFSPMILVARVQALLRR---- 121

Query: 123 NNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  AE        + +   GRD  + G    L  +E  +L +L  N+G  +++ QI +++
Sbjct: 122 SGNAEYSTKLFDGLEINEIGRDVYIDGVKLDLSPKEFELLVFLADNKGIALSRDQILNSV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +D   +   V++HI KLR KL +K  F  + + R LGY  +
Sbjct: 182 WD-YDYFGDARTVDTHIKKLRLKLGDKGDF--IQTVRGLGYKFE 222


>gi|302336274|ref|YP_003801481.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320114|gb|ADK68601.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 228

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R     P+I ++   ++   +   D+G DD + KP    E+LAR+    +  +
Sbjct: 61  MEVLRRLRRQKDTPVILLTARDAVMDKVAGLDAGADDYITKPFAIEELLARIRVTLKH-R 119

Query: 121 VSNNRAETGPIRVFSDG--RDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            S     T    + + G   DP+     VQGE   L  RE  +L  LMA++G  + + ++
Sbjct: 120 ESGQLPSTSSATLAACGVTLDPDRHEVLVQGEPVALTNREFEVLHALMAHKGVVLTRARL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            S   G ++   E N V+ HI+ LR K+ ++ G   + + R +GY +
Sbjct: 180 ASEALG-YEYVGETNNVDVHIAHLRSKIDDRFGIKLLTTVRGVGYVV 225


>gi|255034266|ref|YP_003084887.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254947022|gb|ACT91722.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 225

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 7/165 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL R IR+   + P++ ++   +    +   D+G DD + KP   +E+LARV A+ +R 
Sbjct: 60  IELCREIRSWGDETPILMLTALGTTDDKVTGLDAGADDYLVKPFEFKELLARVRALTKRG 119

Query: 120 KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++ A+      + V  D +     G    L  RE  +L YL+ N+G+ ++K +I   
Sbjct: 120 TTVSHTAQVLRFADLEVSLDAKTVYRSGNKINLTAREFNLLVYLIRNQGRVISKVEIAEQ 179

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ + FD     NV+E +++ LRKK+        + ++  +GY +
Sbjct: 180 VWDIGFDTGT--NVIEVYVNYLRKKIDKDYPVKLIHTQFGMGYVL 222


>gi|168186231|ref|ZP_02620866.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169295719|gb|EDS77852.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 226

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 1/138 (0%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR +S++P+I I+   +    +D F  G DD ++KP     +  R+ A+ RR  V  NR 
Sbjct: 67  IRKNSEIPIIFITAKDTESDIIDGFKLGCDDYISKPFSIEVLKQRIKAVLRRTTVVENRL 126

Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                I +  +  D +  G    L  +E R+LE L+ N G+ + +  I   ++      V
Sbjct: 127 FVYEDITIDFNKMDVKKNGITIKLTAKEYRLLELLVKNSGQVLTRRTILEKLWDTDGNFV 186

Query: 186 EENVVESHISKLRKKLRN 203
           +EN +  +I +LRKK+ +
Sbjct: 187 DENALNVNIRRLRKKIED 204


>gi|269138423|ref|YP_003295123.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|267984083|gb|ACY83912.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|304558449|gb|ADM41113.1| Response regulator BaeR [Edwardsiella tarda FL6-60]
          Length = 243

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 1/158 (0%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 67  LMLPGVDGLTLCREIRRTSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I RR  + +  +E  P+ +         + +   L + E R+L+ L    G  +++ Q
Sbjct: 127 KTILRRCGLQDTLSEPAPLLIDESRFQASYRQQPLDLTQAEFRLLKTLATQPGSVLSREQ 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           + + +Y  +   V +  V+SHI  LR+KL    G +P+
Sbjct: 187 LLNHLYDDY-RVVTDRTVDSHIKNLRRKLEPVEGDEPL 223


>gi|291613481|ref|YP_003523638.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
 gi|291583593|gb|ADE11251.1| two component transcriptional regulator, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 222

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 41/237 (17%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIG----- 55
            ++I+D AL+ D   A     G +++         W++     D + + EA+        
Sbjct: 3   ILVIEDDALLGDAIQAGLKQSGYAVD---------WMKDGVSADQALSTEAYAAAVLDLG 53

Query: 56  ----KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
                G +VL+  R+   ++ +P++ ++   +++  +   D+G DD + KP    E+ AR
Sbjct: 54  LPRMSGLEVLQ--RLRSRNTPIPVLILTAMDTVEDRIKGLDAGADDYLVKPFDMGELAAR 111

Query: 112 VAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
           + A+ RR        L+V+    E    RV         +     LP +E  +L  LM N
Sbjct: 112 LRALIRRASGKPAPALQVAGVEMEPAAHRVL-------YRNSAIELPAKEFAVLHALMLN 164

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G+ +++TQI   +Y  + E VE N VE +I  LR+KL  +L    +++ R +GY I
Sbjct: 165 AGRVLSRTQIEEQLYA-WGEEVESNAVEVYIHHLRRKLFPEL----IETIRGVGYLI 216


>gi|114569487|ref|YP_756167.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339949|gb|ABI65229.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 225

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           K + V  L R  +A    P++ ++        +  FD+G DD + KP H  E+LAR+ A+
Sbjct: 56  KMDGVTVLERWRQAGRDFPVLILTARDRWSEKVAGFDAGADDYLTKPFHTEELLARMRAL 115

Query: 116 YRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR         E G + + + G    + G    +   E R+L YL  ++ + +++T++ 
Sbjct: 116 TRRAAGHTTATIECGGLSIDTRGARVFIDGAPVKVTSHEFRMLSYLAHHQDRVISRTELV 175

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             IY   FD   + N +E  + +LRK    K+G D +++ R LGY +
Sbjct: 176 EHIYDQDFDR--DSNTIEVFVGRLRK----KIGTDRIETVRGLGYRL 216


>gi|5764628|gb|AAD51348.1|AF173226_5 SmeR [Stenotrophomonas maltophilia]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 2/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L R +RA S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +
Sbjct: 68  VDLCRELRASSDVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVMAVLRRYR 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +          G+   L   E R+L  L+A  G+  A+ ++   +Y L
Sbjct: 128 PDPGARANGGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLY-L 186

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219
               V +  V+SH+  LR+KL +  +  +P+ S   +GYS
Sbjct: 187 DHRVVVDRTVDSHVRNLRRKLADAGMEGEPIRSVYGMGYS 226


>gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11]
          Length = 219

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 2/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR +
Sbjct: 61  LEICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  +   I +  +     V G    L + E  +L  L  N+   + + QI + ++G 
Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 179 YNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218


>gi|315644095|ref|ZP_07897265.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280470|gb|EFU43759.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 13/162 (8%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           R+IR+HS VP+I +S  D+P+    +     G DD + KP H   ++A++ A  RR+   
Sbjct: 65  RMIRSHSNVPIIFLSSRDHPT--DMVMSMQLGADDFIQKPFHFDVLIAKIQATLRRVYNY 122

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  R E     G    F        QG V  L + E  IL+ LM  + + V++ ++  ++
Sbjct: 123 STERTELRAWRGATVEFGKNTISSPQGTV-ELTKNEMYILKILMERKNQIVSREELIKSL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +   +  V +N +  ++++LRKKL   LG DP +++K   GY
Sbjct: 182 WD-HEHFVSDNTLTVNVNRLRKKLE-PLGLDPYIETKVGQGY 221


>gi|238922349|ref|YP_002935863.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
 gi|238874021|gb|ACR73729.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
          Length = 223

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 1/142 (0%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R IR  S+VP+I ++   + +  +   D G DD + KP + +E+L+R++A  RR K
Sbjct: 59  FDICRKIRKSSEVPVIFLTSCDNEEEIVTGLDIGADDYITKPFYTKELLSRISANLRRSK 118

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + G I V  D      QG+   +   E  I++ L+ N+G+ V +  I+  I+ 
Sbjct: 119 FNAGYIYKKGDIVVDFDRYKISRQGDELNISTNEFDIVKMLIENKGRVVRRDAIYEKIWD 178

Query: 180 LFDEAVEENVVESHISKLRKKL 201
           +    VE N +   +S+++ KL
Sbjct: 179 IHGNFVEYNTLTVAMSRIKAKL 200


>gi|153953290|ref|YP_001394055.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219853922|ref|YP_002471044.1| hypothetical protein CKR_0579 [Clostridium kluyveri NBRC 12016]
 gi|146346171|gb|EDK32707.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219567646|dbj|BAH05630.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 225

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  LE+ + IR    + P+I ++   S+ + ++  D G DD + KP    E+LAR+ A+
Sbjct: 56  GKDGLEVLKHIRNRGIRTPVIILTAMDSISSRVEGLDQGADDYLIKPFSKEELLARIRAL 115

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVA 169
            RR     +  + G I++ S   DP ++GE+        L  +E ++LE L  N+ + + 
Sbjct: 116 GRR---HIDFIQCGTIQLASLTFDP-LRGELQYKENKVKLTSKESQLLELLARNKNQVLT 171

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           K QI   ++G   +    N +E + S LRKKLR       +++ R +GY +
Sbjct: 172 KDQILDRVWGPDSDVEMNNNIEVYFSYLRKKLRRLNCNVIIETIRGIGYCL 222


>gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763]
 gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299]
 gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus 132]
 gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR
 gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR
 gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR
 gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR
 gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR
 gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR
 gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR
 gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR
 gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus]
 gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763]
 gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299]
 gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20]
 gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981]
 gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00]
 gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131]
 gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172]
 gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189]
 gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193]
          Length = 219

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 2/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR +
Sbjct: 61  LEICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  +   I +  +     V G    L + E  +L  L  N+   + + QI + ++G 
Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 179 YNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218


>gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
 gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
          Length = 248

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 9/166 (5%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R H   VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR 
Sbjct: 76  LEVMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S  +     E G +R+  D  +    G+   L   E  +L YLM N  + ++K QI  
Sbjct: 136 GASEEKPASILEVGDLRMDEDSHEVWRGGDEIQLTATEFELLRYLMRNPRRVLSKPQILD 195

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            ++  +D   + N+VE +IS LR+K+    G +P + + R +GY +
Sbjct: 196 RVWN-YDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVL 238


>gi|152998427|ref|YP_001343262.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839351|gb|ABR73327.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 222

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D   + D     F + G  ++   S+E  E   S    D+  ++  L GK G ++
Sbjct: 3   MLLIEDNESLADSIRVYFKNLGHPIDWIGSVEKAEASLSFDDFDLLILDINLPGKSGFQL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R     +++P++ ++    +   +   D G DD + KP   RE+ AR  A+YRR +
Sbjct: 63  LQSLR--SKGNRIPVLVLTARTEVDDRVSSLDFGADDYLAKPFDFRELAARCRALYRRER 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N  + G +         +V G    L  RE ++LE  + N  + + K  I + +Y 
Sbjct: 121 GGASNEIQCGNLVYDLAAHSAKVNGITLDLRPRELQLLELFLKNLDRVLTKDDISNRLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +DEA   N +E  +++LRK+L
Sbjct: 181 -YDEAYTPNAIEQTLTRLRKQL 201


>gi|89893958|ref|YP_517445.1| hypothetical protein DSY1212 [Desulfitobacterium hafniense Y51]
 gi|89333406|dbj|BAE83001.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 232

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 6/153 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
             P++ ++    ++  ++  D G DD + KP    E+LAR+ AI RR  + + N    G 
Sbjct: 79  STPILMLTAKGEIEDRIEGLDHGADDYLTKPFAMGELLARIRAITRRKTEFAPNLLTVGN 138

Query: 131 IRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           +++  D  + E+ GE     L  +E +++E +M++  + ++  Q    I+G +D   E N
Sbjct: 139 LQL--DRANYELSGEKGSIRLGNKEYQMMEMMMSSPNRLISTEQFMERIWG-YDAEAEIN 195

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           VV  +IS LRKKL        + + R LGY+++
Sbjct: 196 VVWVYISYLRKKLTALGSTVTIKASRGLGYTLE 228


>gi|91975373|ref|YP_568032.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91681829|gb|ABE38131.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 233

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA S   Q+P+I ++        +    +G DD + KP    E+LARV  + R
Sbjct: 62  IELCRRLRARSDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   +  R  T    G + +  D R     G    L   E R+LE+ + + G+  ++ Q+
Sbjct: 122 R--AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 180 LDGVWG-RDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|160947486|ref|ZP_02094653.1| hypothetical protein PEPMIC_01420 [Parvimonas micra ATCC 33270]
 gi|158446620|gb|EDP23615.1| hypothetical protein PEPMIC_01420 [Parvimonas micra ATCC 33270]
          Length = 216

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R  R +  + P++ ++    L   ++  DSG DD + KP   +E+LAR+ A+ RR  
Sbjct: 50  EVARRARKNGIKTPILMLTAKSQLDDKVEGLDSGADDYLTKPFQTKELLARIRALGRRSS 109

Query: 120 KVSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    G + +   +   + +  G+   L  +E RILEY+  N G+ + + Q+   I
Sbjct: 110 SFQEDILNYGDLTIDKTTAMLNCDTTGQNVRLSEKELRILEYMFNNNGQIMTREQLAVKI 169

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G F+   E N VE ++S  RKKL        + + R LGY +
Sbjct: 170 WG-FESETEYNNVEVYMSFTRKKLTFVGSNVEIKAVRGLGYEL 211


>gi|317056172|ref|YP_004104639.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448441|gb|ADU22005.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 113/224 (50%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            +L +D   + +  +A+   +  S++  +N L+  +++   A  D   ++  + G  G  
Sbjct: 3   LLLAEDEKELSNALVAVLKHNNYSVDAVYNGLDAYDYI-IGAEYDGIVLDIMMPGLDGLT 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RR 118
           VLE  RI     Q P++ ++    ++  +   D+G DD + KP    E+LAR+ A+  RR
Sbjct: 62  VLE--RIREKGIQTPVLLLTAKAQVEDRIAGLDTGADDYLTKPFAMGELLARIRAMTRRR 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S N  + G + +  +      +     L  +E ++LE LM NR   ++  ++   I+
Sbjct: 120 AEFSPNTLKVGNVTLDRERFVISTKNGETKLGNKEFQVLEMLMLNRNILISTERLMEKIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           G FD   E +VV  +IS +RKKL + +G D  + + R +GY+++
Sbjct: 180 G-FDAEAEISVVWVYISYIRKKL-SAVGADVEIKASRGVGYTLE 221


>gi|257438018|ref|ZP_05613773.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257199678|gb|EEU97962.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 236

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 83  AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP++E  +L  L A+ G+   K Q+   ++G   EA + 
Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWGYETEA-DP 201

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++ ++   F+ V + R +GY +
Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233


>gi|253681316|ref|ZP_04862114.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562554|gb|EES92005.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 235

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            L + IR   ++P+I +S        +   + G DD + KP +  E++ARV A  RR   
Sbjct: 62  HLVKKIREKYKIPVIMLSAKSEYSHKILGLELGADDYITKPFNAMEVVARVKAQLRRYYK 121

Query: 120 ------KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  V++N    E G +++ +        G   PL   E +I+ YLM + G+   K 
Sbjct: 122 YHSTGDTVNDNEKCLEYGNLKLNNSTCTLYKNGVEIPLTSTEYKIIFYLMNSCGRVFTKK 181

Query: 172 QIFSAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
           QIF  ++   DE    ++NV+  HIS LR K+ N    +P  + + R LGY  ++N
Sbjct: 182 QIFEYVW---DEPFYGDDNVIMVHISNLRDKIEND-SKNPEYIKTIRGLGYKFNYN 233


>gi|225377469|ref|ZP_03754690.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM
           16841]
 gi|225210686|gb|EEG93040.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM
           16841]
          Length = 236

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 83  AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP++E  +L  L A+ G+   K Q+   ++G   EA + 
Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWGYETEA-DP 201

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++ ++   F+ V + R +GY +
Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233


>gi|224482624|gb|AAB36584.2| JadR1 [Streptomyces venezuelae ATCC 10712]
 gi|328886020|emb|CCA59259.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces venezuelae ATCC 10712]
          Length = 259

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 6/144 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR+   VP+I ++   S    +    +G DD + KP   RE++AR+ A+ RR +
Sbjct: 100 LEVCRGIRSAGDVPVIAVTSRGSELDRVLGLQAGADDYLVKPYGFRELMARMEAVMRRAR 159

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + A T   GP+ + +  R   + G+   L R+E  +L  L ++    + + Q+   +
Sbjct: 160 PRPSTARTITRGPLHIDAAARQVTLDGQDVDLTRKEFDLLYLLASHPDTVIPRKQLMQQV 219

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G   ++     V++H+S LR KL
Sbjct: 220 WG---DSWSRRTVDTHVSSLRNKL 240


>gi|169794902|ref|YP_001712695.1| transcriptional regulator [Acinetobacter baumannii AYE]
 gi|184159323|ref|YP_001847662.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213157694|ref|YP_002320492.1| two-component system DNA-binding response regulator [Acinetobacter
           baumannii AB0057]
 gi|215482449|ref|YP_002324635.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|239502332|ref|ZP_04661642.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB900]
 gi|260557267|ref|ZP_05829483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|301346205|ref|ZP_07226946.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB056]
 gi|301512563|ref|ZP_07237800.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB058]
 gi|301597175|ref|ZP_07242183.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB059]
 gi|332854188|ref|ZP_08435208.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013150]
 gi|332866379|ref|ZP_08436976.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013113]
 gi|332872585|ref|ZP_08440554.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6014059]
 gi|169147829|emb|CAM85692.1| transcriptional regulator [Acinetobacter baumannii AYE]
 gi|183210917|gb|ACC58315.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078207|gb|ABO13164.2| transcriptional regulator [Acinetobacter baumannii ATCC 17978]
 gi|213056854|gb|ACJ41756.1| two-component system DNA-binding response regulator [Acinetobacter
           baumannii AB0057]
 gi|213988084|gb|ACJ58383.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|260409373|gb|EEX02675.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|300915683|gb|ADK46841.1| PmrA [Acinetobacter baumannii]
 gi|300915687|gb|ADK46844.1| PmrA [Acinetobacter baumannii]
 gi|300915690|gb|ADK46846.1| PmrA [Acinetobacter baumannii]
 gi|300915693|gb|ADK46848.1| PmrA [Acinetobacter baumannii]
 gi|300915696|gb|ADK46850.1| PmrA [Acinetobacter baumannii]
 gi|300915699|gb|ADK46852.1| PmrA [Acinetobacter baumannii]
 gi|300915703|gb|ADK46855.1| PmrA [Acinetobacter baumannii]
 gi|300915707|gb|ADK46858.1| PmrA [Acinetobacter baumannii]
 gi|300915711|gb|ADK46861.1| PmrA [Acinetobacter baumannii]
 gi|300915715|gb|ADK46864.1| PmrA [Acinetobacter baumannii]
 gi|322509234|gb|ADX04688.1| Transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323519263|gb|ADX93644.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332728113|gb|EGJ59501.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013150]
 gi|332734663|gb|EGJ65768.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013113]
 gi|332739271|gb|EGJ70129.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6014059]
          Length = 224

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  MQVLKQIRQRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSG 120

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V    A      E+G + +  +      +G+   L  RE  IL  LM +  K  +K  + 
Sbjct: 121 VEAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMTHPNKIFSKANLE 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y  FD  V  N +E ++  LR     KLG D + + R LGY +
Sbjct: 181 DKLYD-FDSDVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 221


>gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 223

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  + IR  S VP+I ++   +    +     G DD V KP   +E+LAR+ A  RR K
Sbjct: 60  LEAAQEIRTFSDVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRRSK 119

Query: 121 VSNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              N   T        + V   G   +V G    L R+E  +L  LM N+G+  ++ Q+ 
Sbjct: 120 GYKNGNLTSQMISHEELTVDLKGHMVQVDGITVNLTRKEFLLLALLMQNQGQVFSREQLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR 202
             I+G F+       V++HI  LR KL+
Sbjct: 180 DQIWG-FESEGTARTVDTHIKTLRLKLK 206


>gi|146309422|ref|YP_001189887.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145577623|gb|ABP87155.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G+  LE E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++     S +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   S++ A   PI V     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRAGPSDSEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|306833114|ref|ZP_07466244.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|304424688|gb|EFM27824.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
          Length = 218

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 106/225 (47%), Gaps = 18/225 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D   S E   + + +E L+  +  +++ +   +       LE
Sbjct: 4   LIVEDEDMIREGISDYLTD--CSYETIQAADGQEALEKFSSYEIALVLLDIQMPKLSGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R    
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMGAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118

Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + G + ++ D R         + GE   +  +E  IL+YL+ N  + + ++QI  A
Sbjct: 119 ---YDKGRVFIYKDTRVDFESYSASLAGEEVAINAKELEILDYLVKNERRVLTRSQIIDA 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   DE   E V++ +I  LRKKL      D + + R +GY ++
Sbjct: 176 VWKATDEVPFERVIDVYIKGLRKKLH----LDCIHTVRNVGYKLE 216


>gi|304317403|ref|YP_003852548.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778905|gb|ADL69464.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 225

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
             P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR + S +   +   
Sbjct: 72  NTPILMLTAKDALDDKVKGLDTGADDYMTKPFELSELTARIRALLRREQPSKSPILKIAD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
           + V +   D    G++  L  +E  +LEY+M N G+ + ++QI   ++G  FD     N+
Sbjct: 132 LEVNTLTHDVRRGGKIITLTSKEYSLLEYMMRNSGRVLTRSQIVDHVWGYEFDGL--SNI 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +I  LRKK+ +      + + R  GY +
Sbjct: 190 IDVYIRYLRKKIDDNFDIKLIQTIRGSGYCL 220


>gi|225376300|ref|ZP_03753521.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
           16841]
 gi|225211946|gb|EEG94300.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
           16841]
          Length = 227

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 5/147 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           ++ R +R  S+VP+I ++        L  F+ GVD+ ++KP   + ++ARV A+ RR  L
Sbjct: 65  DVCREVRETSKVPIIMLTAKSDESDELTGFELGVDEYISKPFSPKILVARVNALLRRSGL 124

Query: 120 KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N+    E G I++        V G    L  +E  +L+Y M N+G  +++ +I + +
Sbjct: 125 TAGNDEKFVEAGGIKLDKTAHLVTVDGRPIELSIKEFELLDYFMENQGIALSREKILNNV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +  +D   +   +++H+ KLR K+  K
Sbjct: 185 WN-YDYFGDARTIDTHVKKLRAKIGEK 210


>gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB
           family [Candidatus Kuenenia stuttgartiensis]
          Length = 224

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 19/193 (9%)

Query: 38  LQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           L +    D+  ++  L G  G++VL+  R    H+  P I ++   S+   ++  D G D
Sbjct: 39  LATHENYDLIVVDIMLPGINGKEVLKQIRNTGIHT--PAIFLTAIDSVNDKVNGLDIGAD 96

Query: 97  DVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
           D + KP    E+LAR+ A  RR        LK  N   +    +VF D +    + E+ P
Sbjct: 97  DYIVKPFSFSELLARIRACMRRRTDNYVSNLKTGNVTLDPKTRKVFRDKQ----KIELTP 152

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           +   E  ILEY M N G+ + +T I   I+    E+   NV++ HIS+LR KL       
Sbjct: 153 I---EFSILEYFMRNPGQILTRTMISEHIWDYNYESF-SNVIDVHISRLRNKLEKDFDKG 208

Query: 209 PVDSKRFLGYSID 221
            + + R +GY ++
Sbjct: 209 IIHTVRRVGYVLE 221


>gi|146299380|ref|YP_001193971.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146153798|gb|ABQ04652.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 228

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 102/218 (46%), Gaps = 20/218 (9%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K GYI    ++   +LE F S +++  L      D         G G +VL+  R  +
Sbjct: 24  LSKAGYICKIANNCADALEEFGSNDYDAMLLDLGLPD---------GDGFEVLQTIR--K 72

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126
             S++ +I ++    L   ++    G DD + KP    E+ AR+ A+ RR+     NN +
Sbjct: 73  TKSKIAVIVLTARGELDDRINGLHLGADDYLTKPFALTELAARLFAVIRRIHGFTLNNLS 132

Query: 127 ETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDE 183
             G +      +D +V     P  L ++E  I +YL+ N+ + + + Q+   I+G + + 
Sbjct: 133 IHGFLLQL---QDYKVSFNEVPLSLTKKEFDIFQYLVLNKNRVITRLQLTEHIWGDILEI 189

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + N ++ H+  LRKKL      D  ++ R +GY I+
Sbjct: 190 NSDSNFIDVHVRNLRKKLDKHTSIDWFETVRNVGYRIN 227


>gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima]
          Length = 239

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  L   DG           EE L+ +  EDV      ++  G    EL R IR+
Sbjct: 23  LSKEGYEVLKAYDG-----------EEALKIANDEDVDMFIVDIMLPGIDGFELVRKIRS 71

Query: 70  ---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
              +   P+I +S        +   + G DD + KP   RE+LARV AI+RRL  +    
Sbjct: 72  MEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRLSTATQSK 131

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRVAKTQIFSAI 177
           E  P ++ +  +D E+  E + +  R +++         L +L  N GK  ++  +   +
Sbjct: 132 EERPKKIIA--KDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDVLLDKL 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +G +D   +   V+ HI +LR K+      DP + K
Sbjct: 190 WG-YDYYGDTRTVDVHIRRLRTKIEE----DPSNPK 220


>gi|116494259|ref|YP_805993.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191637593|ref|YP_001986759.1| Two-component system regulator [Lactobacillus casei BL23]
 gi|239629641|ref|ZP_04672672.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065765|ref|YP_003787788.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116104409|gb|ABJ69551.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190711895|emb|CAQ65901.1| Two-component system regulator [Lactobacillus casei BL23]
 gi|239528327|gb|EEQ67328.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438172|gb|ADK17938.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381643|gb|AEA53119.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei LC2W]
 gi|327384810|gb|AEA56284.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei BD-II]
          Length = 231

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P++ ++   +L   L  F+ G DD + KP H  E++ R+ A+ +R      ++    G
Sbjct: 75  KTPVLILTAKDALTDKLHGFELGGDDYLTKPFHREELIMRLKALLKRTGHFFDDDGLTAG 134

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  V     +  +  +   L  +E  +L YL+ N+   + K QIF  ++G FD     +V
Sbjct: 135 PFVVHVTSHEVLINDQPVALNGKEFDLLVYLLQNQKTIITKDQIFDRLWG-FDSETAVSV 193

Query: 190 VESHISKLRKKLR 202
           VE ++S LRKKL+
Sbjct: 194 VEVYMSNLRKKLK 206


>gi|307704977|ref|ZP_07641865.1| response regulator, transcriptional regulatory protein
           [Streptococcus mitis SK597]
 gi|307621487|gb|EFO00536.1| response regulator, transcriptional regulatory protein
           [Streptococcus mitis SK597]
          Length = 178

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G I +       +V+     L
Sbjct: 45  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDILINLSTNTVKVEDTTVEL 104

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  ++G FD     +VVE ++SK+RKKL+     + 
Sbjct: 105 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 163

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 164 LQTLRSVGY 172


>gi|299531523|ref|ZP_07044929.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298720486|gb|EFI61437.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 227

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 11/160 (6%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A S VP++ +S        +   + G DD + KP   RE+LAR  A+ RR   S     T
Sbjct: 69  AGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRR---SRQFQPT 125

Query: 129 GP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            P      +++   G+   +  +   L RRE ++L+ L+   G+ +++  +   I+GL  
Sbjct: 126 APAQLARALQIDEQGQRALIHSKALDLTRREYQLLQSLVNAAGRILSRDALLEQIWGLDS 185

Query: 183 EAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           E+ +   V++HI  LR KLR +L   + + + R LGYS++
Sbjct: 186 ESTDRT-VDTHIKTLRAKLRERLPDQELIVTHRGLGYSLN 224


>gi|262275374|ref|ZP_06053184.1| DNA-binding response regulator [Grimontia hollisae CIP 101886]
 gi|262220619|gb|EEY71934.1| DNA-binding response regulator [Grimontia hollisae CIP 101886]
          Length = 218

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 82/160 (51%), Gaps = 6/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L ++ R ++ +P++ ++    +   +   D G DD + KP    E++AR+  + RR+   
Sbjct: 63  LKQVRRVNATLPIMILTARDEIGDRVKGLDGGADDYMIKPFALEELMARLRVMIRRISGF 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+       + +        V GE   L   E ++L  LM++ G+ ++K Q+  +++G +
Sbjct: 123 SDTNISLHGVSLSLANNCVTVNGEAIKLTPNEFKLLSTLMSHAGRVMSKDQLQQSLHG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D+   +N +E HI  LRK    K+G + + + R +GY I+
Sbjct: 182 DDMASDNAIEVHIHNLRK----KMGGELIKNIRGVGYIIE 217


>gi|256824206|ref|YP_003148166.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687599|gb|ACV05401.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 25/218 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L + G+      DGV  EG ++L  E +       DV+ ++  +       +   R +R 
Sbjct: 27  LERQGFTVSTASDGV--EGLDALRRETF-------DVAVVDVMM--PRMDGITFARKVRE 75

Query: 70  HSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
            S +P++ ++  D P  Q  L  F  GVDD V KP     + AR+ A+ RR+        
Sbjct: 76  GSDLPIVLLTARDLPHDQ--LAGFQVGVDDYVTKPFDGEVLAARLRAVLRRVDTVPEEPA 133

Query: 128 TGPIRV--FSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           T  IRV   S  RD  V    GE   L   E R+LE L+ +RG+ +++ Q+   ++ +  
Sbjct: 134 TATIRVADLSVNRDGMVVKRAGETISLSATEFRLLEVLLDHRGRVLSRHQLLEMVWDIGS 193

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + +VVE  + +LR+    K+G + + + R  GY +
Sbjct: 194 WG-DTHVVEVTVQRLRR----KIGAERIVTVRGAGYKL 226


>gi|229162433|ref|ZP_04290394.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228620912|gb|EEK77777.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 225

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G +D   ++  V++HI KLR KL +K
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209


>gi|255532434|ref|YP_003092806.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345418|gb|ACU04744.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 231

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +++  I+ F  +G   E   +++F   L+  +  +   I   L   G   +
Sbjct: 3   ILLIEDEASLRESIISYFTGEGNICEA--AVDFNSALEKISIYNYDCILLDLSLPGGDGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R ++  + +  ++ IS   +L   +D  + G DD + KP H  E+ ARVAAI RR  
Sbjct: 61  EILRSLKKMNKKEGVLIISARQALDDKIDGLNLGADDYLIKPFHLSELKARVAAIVRRKS 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLP------RRERRILEYLMANRGKRVAKTQI 173
            + +N      I + +      ++ E+  LP      ++E  +L Y +AN+GK ++K  +
Sbjct: 121 YNGSNTIVFNEISIDTLAMSVSIKPELARLPGILTLTKKEYDLLVYFIANQGKVISKNAL 180

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              ++G   D A   + + +HI  LRKKL      D + S   +GY
Sbjct: 181 AEHLWGDEIDLADHFDFIYTHIKNLRKKLVEAGCPDYIRSMYGVGY 226


>gi|183601802|ref|ZP_02963172.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190700|ref|YP_002968094.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196106|ref|YP_002969661.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219408|gb|EDT90049.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249092|gb|ACS46032.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250660|gb|ACS47599.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793689|gb|ADG33224.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 236

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 20/143 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147
           G DD V KP    E++AR+ AI RR   +  + E  PI       +  D  D    G+  
Sbjct: 91  GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVTRAGQTI 147

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E ++L YLM N G+ ++K QI   ++  +D   +  +VES+IS LRKK+ +    
Sbjct: 148 DLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDDVTVT 206

Query: 208 DP----------VDSKRFLGYSI 220
           D           +++KR +GY I
Sbjct: 207 DEDGSTHKVTPLIETKRGIGYMI 229


>gi|168217888|ref|ZP_02643513.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182380085|gb|EDT77564.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 226

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 13/164 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  SQVP+I ++   S    L   + G DD V KP + + +LAR+A+I +R    
Sbjct: 65  ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKRTYSG 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++ N R     ++      +     EV  L + E +IL  L+ N+GK V++  I 
Sbjct: 125 IEGETEIFNCRG----LKYNMSTSEVSFNDEVEELTKNESKILNILIRNKGKIVSRDNII 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            A++   +E +++N +  ++++LR+K+        + +KR  GY
Sbjct: 181 KALWQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223


>gi|330991888|ref|ZP_08315837.1| Cell cycle transcriptional regulator CtrA [Gluconacetobacter sp.
           SXCC-1]
 gi|329760909|gb|EGG77404.1| Cell cycle transcriptional regulator CtrA [Gluconacetobacter sp.
           SXCC-1]
          Length = 241

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 3/144 (2%)

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ RI RA     P++ +++  S    +  F +G DD V +P    E+ AR+ A+ RR K
Sbjct: 61  EVIRISRAARVPTPVMVLAEEKSATAKVRAFSTGADDYVTRPYESMELTARMQAVIRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S      G + +    R+  V G+   L  +E  ILE L+  +G  + K    + +YG
Sbjct: 121 GYSEPTLRAGHLELCLGSREVSVHGQGVHLTGKEYMILELLLLRKGMVLTKDAFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
             DE  E  +++  I KLRKKL+ 
Sbjct: 181 GMDEP-EMKIIDVFICKLRKKLQG 203


>gi|237729952|ref|ZP_04560433.1| DNA-binding transcriptional regulator QseB [Citrobacter sp. 30_2]
 gi|226908558|gb|EEH94476.1| DNA-binding transcriptional regulator QseB [Citrobacter sp. 30_2]
          Length = 227

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 11  ILLIEDDTLIGDGLKTGLSKMGFSIDWFTEGRQGKEALYSAPYDAVILDLTLPGIDGRDI 70

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  RA+  Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 71  L---REWRANGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRA 127

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +          GE   L  +E  +LE LM N+G+ + +  I   +Y
Sbjct: 128 SGQASNTLCHGQVTLDPGALVATAAGEPLSLKPKEFALLELLMRNKGRVLPRKLIEEKLY 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 188 -TWDENVSSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 224


>gi|254524477|ref|ZP_05136532.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219722068|gb|EED40593.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR +  ++   + G  
Sbjct: 73  TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRARGQASEVVQIGGF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +  +      + GE   LP RE R+LE L+   G+ V K +I + ++G FD+    N +E
Sbjct: 133 QFDNAAHRVSLDGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFG-FDDEAGPNAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LRKKL
Sbjct: 192 LYVGRLRKKL 201


>gi|139438138|ref|ZP_01771691.1| Hypothetical protein COLAER_00679 [Collinsella aerofaciens ATCC
           25986]
 gi|133776335|gb|EBA40155.1| Hypothetical protein COLAER_00679 [Collinsella aerofaciens ATCC
           25986]
          Length = 220

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 3/159 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR     P+I ++   + +  +  +  G DD V KP    E+ A+VAA  RR +
Sbjct: 60  FELVRQIRPDFDGPIIFLTARVAEEDAVAGYGLGADDYVRKPFGAAELRAKVAAHLRRER 119

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + A + G +R+    R   V  E  PL   E  I EYL  + G+ +++ QI  A+ G
Sbjct: 120 RPRSHALSFGEVRIDLGARGLAVGDEAVPLTPTEYAICEYLARHPGQVMSRAQIREAVLG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +A ++  +   +S+ R+KL ++ G DP+ +   +GY
Sbjct: 180 WESDA-DDAAISMQVSRARRKL-SEAGADPIATVWGMGY 216


>gi|111223451|ref|YP_714245.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111150983|emb|CAJ62690.1| putative two-component system response regulator [Frankia alni
           ACN14a]
          Length = 207

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 6/133 (4%)

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVF 147
           D  D+G DD + KP     + AR+ A+ RR      R  + G + +  +  D  V     
Sbjct: 75  DGLDAGADDYLRKPFSFVVLTARLRALARRGASPRPRLLSHGGLVLDPESGDCSVGAAPV 134

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L  RER +LE L+ N G+ ++K ++ +A++GL D   E N+VE ++S LR+    K+G 
Sbjct: 135 SLQPRERALLEVLLRNPGRVLSKDRLLAAVWGL-DGGGEGNLVEVYVSSLRR----KIGS 189

Query: 208 DPVDSKRFLGYSI 220
           D + + R LGY +
Sbjct: 190 DRIATVRGLGYRL 202


>gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP---------IRVFSDGRDPEVQG 144
           G DD + KP   RE++ARV AI RR K+   +    P         +++  +  +   +G
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTKLQEEQIPEVPDENSIMISELKILPEFYEAYFRG 155

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RN 203
           E   L  +E  +L YL  N+G+ + + Q+ SA++  +D A +  +V+ HIS LR K+  N
Sbjct: 156 EKLELTPKEFELLVYLARNKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEHN 214

Query: 204 KLGFDPVDSKRFLGYSID 221
                 + + R LGY ++
Sbjct: 215 TKKPAYIKTIRGLGYKLE 232


>gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 226

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  S VP+I ++   S+   +   DSG +D + KP    E+LAR+    R    
Sbjct: 63  EVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAP 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S        + + +D R   ++G+   L +RE  +L +L+ N+G  +++  +   ++G
Sbjct: 123 LSSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD A + N V+ +I  LR K+        + + R +GY I
Sbjct: 183 -FDFAGDTNAVDVYIRFLRGKIDEVFNVKFIHTVRGVGYVI 222


>gi|116252719|ref|YP_768557.1| two component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257367|emb|CAK08462.1| putative two component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 223

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE +  +P + R     P+I ++     +  ++  D G DD + KP    E++AR+ A+ 
Sbjct: 57  GEGLSFIPELRRTGKDTPIIVLTARNEPKERIEGLDLGADDYLGKPFLVEELMARLRAVL 116

Query: 117 RR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR      LK++  R    P+ +        V      LPRRE  +L  L   + + V +
Sbjct: 117 RRSPELAELKITAGRMVIDPLHL-----SVTVDAVPLDLPRRELLVLAALARRKEQTVLR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + + +A+Y  ++E ++ N +++HIS+LRK+L +      + + R +GY
Sbjct: 172 STLEAAVYN-YEEEIQSNALDAHISRLRKRLIDVGAGVAIHNIRGVGY 218


>gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 223

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 63  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 123 KQEQQEEVQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204


>gi|24114327|ref|NP_708837.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a
           str. 301]
 gi|30064375|ref|NP_838546.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a
           str. 2457T]
 gi|24053488|gb|AAN44544.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|30042632|gb|AAP18356.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|281602412|gb|ADA75396.1| Two component transcriptional regulator, winged helix family
           precursor [Shigella flexneri 2002017]
 gi|313648139|gb|EFS12585.1| transcriptional regulatory protein qseB [Shigella flexneri 2a str.
           2457T]
 gi|332998724|gb|EGK18320.1| transcriptional regulatory protein qseB [Shigella flexneri VA-6]
 gi|332999777|gb|EGK19361.1| transcriptional regulatory protein qseB [Shigella flexneri K-272]
 gi|333014732|gb|EGK34077.1| transcriptional regulatory protein qseB [Shigella flexneri K-304]
 gi|333015645|gb|EGK34984.1| transcriptional regulatory protein qseB [Shigella flexneri K-227]
          Length = 219

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|289178438|gb|ADC85684.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 250

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 20/143 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147
           G DD V KP    E++AR+ AI RR   +  + E  PI       +  D  D    G+  
Sbjct: 105 GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVTRAGQTI 161

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E ++L YLM N G+ ++K QI   ++  +D   +  +VES+IS LRKK+ +    
Sbjct: 162 DLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDDVTVT 220

Query: 208 DP----------VDSKRFLGYSI 220
           D           +++KR +GY I
Sbjct: 221 DEDGSTHKVTPLIETKRGIGYMI 243


>gi|171057189|ref|YP_001789538.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774634|gb|ACB32773.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 223

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129
           S VP++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR L  ++     G
Sbjct: 71  SSVPVLILTAADSIEQRVKGLDFGADDYMAKPFSLQELEARVRALTRRGLGSASAIIRHG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P+   + GR   +   +  L  RE  +LE L+   G+ V+K Q+   +   + E V  N 
Sbjct: 131 PLSFDATGRVAYINDLMIDLSARELSLLEVLLQRAGRLVSKDQLVERLCE-WGEEVSNNA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E +I +LRKK+    G   + + R LGY ++
Sbjct: 190 IEVYIHRLRKKIEQ--GPIRIATVRGLGYCLE 219


>gi|324327498|gb|ADY22758.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G +D   ++  V++HI KLR KL +K
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209


>gi|291568591|dbj|BAI90863.1| two-component system response regulator (OmpR subfamily)
           [Arthrospira platensis NIES-39]
          Length = 227

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 79/147 (53%), Gaps = 6/147 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+   +R+  ++ P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR 
Sbjct: 60  LEICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRP 119

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V++NR + G ++   + +      +   L  +E ++L+YLM + G+ +  T+I 
Sbjct: 120 PILDSTVTSNRLQFGDLQFDCETQLAYRGQKAIELSEKESQLLQYLMRHPGQLLTHTEIH 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G  D+    NV+ + I  LR+K+
Sbjct: 180 QHLWGETDKKPSSNVLAAQIRLLRRKI 206


>gi|238022830|ref|ZP_04603256.1| hypothetical protein GCWU000324_02747 [Kingella oralis ATCC 51147]
 gi|237866033|gb|EEP67169.1| hypothetical protein GCWU000324_02747 [Kingella oralis ATCC 51147]
          Length = 222

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 110/221 (49%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L++D +++    +    DDG +++  N+    E   +    D+  ++  L G+ G +V
Sbjct: 3   ILLVEDDSMIAQAVVGSLKDDGYAVDWVNNGNTAETTLAGQNYDIILLDLGLPGQDGIQV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L+  R +R  +  P++ ++    +Q+ L   D G DD + KP    E+ AR+ AI RR  
Sbjct: 63  LQHTRALR--NATPILILTARDDIQSRLAGLDGGADDYIIKPFIMAELKARIRAILRRHA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++     G I++        ++G  E   L ++E  +L+ L++  G   +++++   I
Sbjct: 121 GQASPLLRNGSIQLNPQTYQATLEGQPENILLSQKEFAVLQALISRAGIIHSRSELEDKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           YG + E VE N ++  I  LRK    K+G + + + R +G+
Sbjct: 181 YG-WGEEVESNAIDFLIHSLRK----KIGKEHIKNIRGVGW 216


>gi|229018790|ref|ZP_04175639.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229025034|ref|ZP_04181462.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228736240|gb|EEL86807.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228742540|gb|EEL92691.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 225

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVTEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G +D   ++  V++HI KLR KL +K
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209


>gi|229059731|ref|ZP_04197108.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228719560|gb|EEL71161.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 223

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 10/162 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++   S    L   + G DD + KP +   +LARV  I RR   +
Sbjct: 63  ICREIRKTSDVPIIMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +T  I  + D            Q +   L + E +IL YL+ NRG  V +  +   
Sbjct: 120 SGNFKTNHILTYRDFNLNLSNATVTYQDKSVELTKNEVKILSYLINNRGNIVKRDSLIET 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++   D  V+++ +  +I++LRKKL +    +P+ ++R LGY
Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLEDIGIENPITTRRSLGY 220


>gi|229174262|ref|ZP_04301795.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228609119|gb|EEK66408.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 225

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIVLTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G +D   ++  V++HI KLR KL +K
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209


>gi|313204235|ref|YP_004042892.1| two component transcriptional regulator, winged helix family
           [Paludibacter propionicigenes WB4]
 gi|312443551|gb|ADQ79907.1| two component transcriptional regulator, winged helix family
           [Paludibacter propionicigenes WB4]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 80/152 (52%), Gaps = 16/152 (10%)

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ RI+R +   + +P+I ++   S    L  F+ G DD ++KP   RE+LARV A+ RR
Sbjct: 63  KMARILRENPKMANIPIIFLTAKDSETDRLTGFNIGADDYISKPFSIREVLARVKAVIRR 122

Query: 119 LKVSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                N+ E  P  V S        + +   ++G   P  ++E  IL+  + N+ +  ++
Sbjct: 123 --ADTNKVEAAPTLVLSYEKLEMSLENKKVMLEGVEVPFTKKEFEILKLFLGNKNRVFSR 180

Query: 171 TQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
            ++ S ++   DE  V +  ++ +I++LRKK+
Sbjct: 181 DEMLSRVWS--DEVIVLDRTIDVNITRLRKKI 210


>gi|306833536|ref|ZP_07466663.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|304424306|gb|EFM27445.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
          Length = 224

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K S+N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFSDNNLSYGEL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V +      + G+   +  +E  +L Y + N+   + K+QIF  I+G FD     +VVE
Sbjct: 133 TVTTSTNTTTINGKEVEMLGKEFDLLVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+       + + R +GY
Sbjct: 192 VYVSKIRKKLKGTTFAKNLQTLRSVGY 218


>gi|296447928|ref|ZP_06889837.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296254565|gb|EFH01683.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 209

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 11/167 (6%)

Query: 40  SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           SSAR D++ ++  L   G+ +  +P++ +A  +  ++ +S    +   +   D+G DD +
Sbjct: 22  SSARYDLAVLDRRL-PDGDGLQVIPKLRQAQPESRVLILSALDDIDQRIGGLDAGGDDYL 80

Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRER 154
            KP    E++ARV A  RR  VS     T P+ + +   DP      + G      RRE 
Sbjct: 81  VKPFDLDELMARVRATLRRGGVS----ATPPVAIGALAFDPATRSVSIHGRAATFHRREL 136

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +LE L+   G+ V +  + S I+G FD+ V+ N + + +S+LR +L
Sbjct: 137 ALLEALVRRGGRVVERDALLSEIWG-FDDEVQPNALTNLVSRLRARL 182


>gi|295317732|gb|ADF98109.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 232

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR HS+VP+I IS   S    +   ++G DD + KP  +  +LA++  + RR+  S  + 
Sbjct: 67  IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 126

Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +T     G + ++++    E +G    L + E  +L YL  N  K V++  +   ++   
Sbjct: 127 DTDFFKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLFKNINKIVSRDTLLEILWSDT 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  +++N +  ++++LRK+L      + +++KR  GY +
Sbjct: 187 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 224


>gi|260596416|ref|YP_003208987.1| DNA-binding response regulator CreB [Cronobacter turicensis z3032]
 gi|260215593|emb|CBA27829.1| Transcriptional regulatory protein creB [Cronobacter turicensis
           z3032]
          Length = 230

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 10/209 (4%)

Query: 24  VSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGE-KVLELPR-IIRAHSQVPLIGIS 79
           + LEGF    FE  L +  +AR+ +  +    +G  +    EL R ++ A+  +P++ ++
Sbjct: 23  MQLEGFTVRTFERGLPALDAARQALPDLVVLDVGLPDISGFELCRQLLAAYPALPVLFLT 82

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFS 135
                   L   + G DD V KP   RE+ ARV  I RRL+   + A+T    G   +  
Sbjct: 83  ARSEEVDKLIGLEIGADDYVAKPFSPREVCARVRTILRRLQKQQSGAQTVVRAGRFELND 142

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
           D        +  PL R E  +L+ L+   G+  ++ Q+   ++G  +++ +   V++HI 
Sbjct: 143 DAAQIAFCDQPLPLTRYEYLLLKTLLLAPGRVYSRQQLMDRVWGDANDSFDRT-VDTHIK 201

Query: 196 KLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
            LR KLR       P+++ R LGYS+  N
Sbjct: 202 TLRAKLRAVNPEASPINTHRGLGYSLAVN 230


>gi|194466634|ref|ZP_03072621.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227543945|ref|ZP_03973994.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300909695|ref|ZP_07127156.1| response regulator [Lactobacillus reuteri SD2112]
 gi|77745285|gb|ABB02543.1| response regulator [Lactobacillus reuteri]
 gi|194453670|gb|EDX42567.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227186061|gb|EEI66132.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300893560|gb|EFK86919.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 228

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 11/204 (5%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+++   L+    L+++  +D   I   L+      +E+ R +R     P+I ++   S
Sbjct: 24  EGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIEVARRVRELKDTPIIIMTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIR-----VFSD 136
           +   +   D G DD + KP    E+LARV A+ RR+ +   NN+     +      +  +
Sbjct: 84  VIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISIEDGNNKEHQTTVNYKDLTIEKE 143

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R      EV  L +RE  +L  LM N    +++  + S ++G +D  VE NVV+ +I  
Sbjct: 144 NRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLLSKVWG-YDSKVETNVVDVYIRY 202

Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220
           LR K+        + + R  GY I
Sbjct: 203 LRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|330957821|gb|EGH58081.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 223

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 11/149 (7%)

Query: 63  LPRI--------IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           LPR+        +RA S+ +P++ ++    ++  +   + G DD + KP    E+ ARV 
Sbjct: 54  LPRMDGFEVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVK 113

Query: 114 AIYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR  +   R +   +  +  D R   +  E+  L  RE+ +LE L+A  G+ ++K Q
Sbjct: 114 ALLRRSVLGGERQQCCGVLTYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + + ++GL DE    + +E +I +LRKKL
Sbjct: 174 LAAQVFGL-DEEASPDAIEIYIHRLRKKL 201


>gi|308175115|ref|YP_003921820.1| two-component response regulator SpaR [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607979|emb|CBI44350.1| two-component response regulator SpaR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328913439|gb|AEB65035.1| two-component response regulator SpaR [Bacillus amyloliquefaciens
           LL3]
          Length = 220

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +EL R IR     P++ ++     ++ +    +G DD + KP   +E++ARV A  
Sbjct: 56  GTDGIELCRRIRPLVDSPILFLTAKSDEESIVKGLMTGADDYITKPFGVKELMARVNAHV 115

Query: 117 RRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR    K    R  +G +  F D ++  +     PL + E +I+E+L  ++ +  ++ QI
Sbjct: 116 RRESREKRQTKRLISGFMFDF-DNKEVWLDDRKLPLTKNEYKIVEFLAQHKNRTFSREQI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  +YGL  +A+   + E  I  +RKK +   G DP+ +   +GY
Sbjct: 175 YEEVYGLDGDALYSTITE-FIRTIRKKCKEH-GADPIKTVWGVGY 217


>gi|229822838|ref|ZP_04448908.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271]
 gi|229787651|gb|EEP23765.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271]
          Length = 234

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ R IR     P+I ++   S+   +   D G DD + KP    E+LAR+ A++RR+ 
Sbjct: 66  LEVCRRIRPIKDTPIIIMTARDSVIDRVSGLDQGADDYIVKPFAIEELLARLRALFRRID 125

Query: 120 --KVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             K   N+++   ++     +   GR  +   +V  L +RE  +L YLM N    +++  
Sbjct: 126 HNKEEKNQSQQSSVKYRNLVIEKKGRIVKRDDQVIDLTKREYELLLYLMENLNTVMSREV 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   ++G +   VE NVV+ +I  LR K+
Sbjct: 186 LLDKVWG-YKTEVETNVVDVYIRYLRNKI 213


>gi|153855183|ref|ZP_01996367.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
 gi|149752352|gb|EDM62283.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
          Length = 227

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S+VP+I ++     +  L  F  GVD+ ++KP   + ++ARV AI RR  V
Sbjct: 65  QVCREVRQSSKVPIIMLTARSEERDELQGFALGVDEYISKPFSPKILVARVNAILRRANV 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  + G I +       ++ G+   L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 LGGGDEIDAGGIVIDKAAHQVKIDGKEIELSFKEFELLSYFVENQGIALSREKILNNVWD 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL  K
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGEK 208


>gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1]
 gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1]
          Length = 224

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 17/155 (10%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124
            P++ IS    +   +   +SG DD ++KP    E++ARV AI RR        + + N 
Sbjct: 74  TPVLMISAKGEIDDRIKGLNSGADDYLSKPFSIAELIARVKAILRRTFSQYEQIISIYNL 133

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDE 183
           + +    +V+ +  D EVQ     L  +E  I+EYL++NR K V+K  I   ++G  FD 
Sbjct: 134 KIDLNTRKVYIN--DSEVQ-----LTSKEYGIIEYLVSNRNKVVSKFAIIEYVWGDEFDP 186

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               N ++ HI  +RKK+ +K  +  + + R +GY
Sbjct: 187 FSMSNFLDVHIKNIRKKIGDK-EYKIIQTVRGIGY 220


>gi|229029069|ref|ZP_04185168.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732349|gb|EEL83232.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 218

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|13476586|ref|NP_108156.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14027348|dbj|BAB53617.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 223

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 13/148 (8%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA  ++VP+I ++   SL   +   + G DD + KP    E+ AR+ A  RR 
Sbjct: 60  LEVLRTLRARGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRR- 118

Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +N+R  T P+    D       R   + GE   L  RE  +LE LM   G+ V+K  +
Sbjct: 119 --ANDR--TAPVVACGDLVFDTNTRLFSLAGEPLALTPREHAVLEQLMVKAGRTVSKAAL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            +AIY  F+   + + +E ++ ++RKKL
Sbjct: 175 SAAIYD-FETDADPSAIEIYVHRVRKKL 201


>gi|311277391|ref|YP_003939622.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308746586|gb|ADO46338.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 222

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 94/209 (44%), Gaps = 31/209 (14%)

Query: 20  GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGI 78
           GDD  +L GF +  +          DV  ++  L GK G  VL+  R  R  + VP++ +
Sbjct: 33  GDD--ALAGFAAQPY----------DVVLLDLGLPGKDGFTVLDGLR--RKDAAVPVLIL 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138
           +   +L   L   D G DD + KP    E+LAR+ A+ RR   S        I       
Sbjct: 79  TARDALADRLKGLDGGADDYILKPFEMSELLARIRAVTRRSSGSRTPVMNNGIMTL---- 134

Query: 139 DPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           DP          GE F L  RE  +L  LM   G  +++  +  +IYG + E VE N +E
Sbjct: 135 DPATHEVCLLASGERFLLSNREYALLAALMLRPGGILSRRDLEDSIYG-WGEEVESNAIE 193

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I  LRK    KLG + + + R +G+ +
Sbjct: 194 FLIHALRK----KLGREAIKNIRGVGWQV 218


>gi|317056826|ref|YP_004105293.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449095|gb|ADU22659.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 227

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 20/206 (9%)

Query: 34  FEEWLQSSAREDVSAI---EAFLIGKGEKV------LELP-----RII---RAHSQVPLI 76
            +E L+SS  E V A    EA  + K E+       L LP     R+I   R+ S+ P+I
Sbjct: 18  LKELLESSGYECVQAFDGDEASRLLKNERFDMVLMDLMLPYKNGERLIGELRSRSETPVI 77

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVF 134
            IS    ++T LD    G DD + KP    E+L R+  + RR      R   E G + + 
Sbjct: 78  VISAKSMMETKLDVLRLGADDYIIKPFDIDEVLVRIEVVLRRSGAFAARPVLEVGDLSMN 137

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
           ++       G    L  +E  +L+  M +  K   K +++  ++       E+N +  H+
Sbjct: 138 TEENTVSANGGQVQLTAKEFMLLKLFMEHPQKVYTKAELYETVWNEV-YYYEDNTINVHV 196

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S LR KL+   G D +++   +GY +
Sbjct: 197 SNLRSKLKKVSGKDHIETVWGIGYRL 222


>gi|229816849|ref|ZP_04447131.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
 gi|229785865|gb|EEP21979.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
          Length = 262

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 14/140 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLP 150
           G DD V KP    E++AR+ AI RR +           G + +  D  D    G+   L 
Sbjct: 119 GGDDYVTKPFSLEEVVARIRAILRRTREQTEEDPIIRVGDLEINEDSHDVTRSGQTIDLS 178

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-------- 202
             E ++L YLM N G+ ++K QI   ++  +D   +  +VES+IS LRKK+         
Sbjct: 179 PTEYKLLRYLMDNAGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDGIEVTDEN 237

Query: 203 -NKLGFDP-VDSKRFLGYSI 220
            +K    P +++KR +GY I
Sbjct: 238 GDKHKVTPLIETKRGIGYMI 257


>gi|86157318|ref|YP_464103.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773829|gb|ABC80666.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 231

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 5/144 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L R +R  S+ P+I +S     +  +   D+G DD + KP    E+LARV    R  +
Sbjct: 65  IDLARRLREWSRAPIIVLSARGREEDKVGALDAGADDYLTKPFGVNELLARVRVALRHAQ 124

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S  ++   E GP+RV    R+  + G    L   E R+L  L  N GK +   QI   +
Sbjct: 125 ASPEQSQVVEAGPLRVDLARREVTLAGAEIRLTPTEYRVLALLARNAGKVLTHRQILREV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G    A E + V   +++LRKKL
Sbjct: 185 WG--PNATEAHYVRVQVAELRKKL 206


>gi|229826761|ref|ZP_04452830.1| hypothetical protein GCWU000182_02137 [Abiotrophia defectiva ATCC
           49176]
 gi|229789631|gb|EEP25745.1| hypothetical protein GCWU000182_02137 [Abiotrophia defectiva ATCC
           49176]
          Length = 223

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 11/160 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           IR  SQ+P+I ++     +  +   D  VDD + KP     ++ ++AA+ RR  K S+  
Sbjct: 67  IRKKSQIPIIILTALNGEKEQIKGLDLQVDDYITKPFSMPVLVRKIAAVLRRASKTSDQE 126

Query: 126 AET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +T      I  F D     V G  + L +RE  +L  L+ NRG+ + +  + + I+  +
Sbjct: 127 HKTISYDNLILDFDD-YSASVNGISYELTQREFEVLRELLLNRGRILTRQNLLNKIWK-Y 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E V+++HI  LRK    KL    + + R +GY ID
Sbjct: 185 DFYGDERVIDTHIKNLRK----KLNITFIQTIRGVGYKID 220


>gi|227541629|ref|ZP_03971678.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182597|gb|EEI63569.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 227

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 19/198 (9%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+G+ A+   DG  +L  FN            + D+  +   L+  G    ++ R +R
Sbjct: 21  LKKEGFDAIIATDGRTALVEFN------------KNDIDLVLLDLMLPGMSGTDVCRRLR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSN 123
             S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR       V++
Sbjct: 69  QVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDSDGSVAD 128

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E G + +  +     V G+   +P +E  +LEYL+ N G+ + + Q+   ++G  D 
Sbjct: 129 QILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRVWG-ADY 187

Query: 184 AVEENVVESHISKLRKKL 201
             +   ++ H+ +LR K+
Sbjct: 188 VGDTKTLDVHVKRLRSKI 205


>gi|326795286|ref|YP_004313106.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546050|gb|ADZ91270.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 219

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 16/226 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + V+ DD +L   G     G DG +++   + L   + LQS   + V          G  
Sbjct: 3   ILVVEDDESL-GSGLCTALGQDGYTVDWLKDGLHASQALQSEHFDLVILDVGLPRMDGFS 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           VL+  R+++  S++P++ ++   +++  +   D+G DD + KP    E+ ARV A+ RR 
Sbjct: 62  VLKNMRLLK--SEIPVLVLTARDAIEDRITGLDAGADDYLVKPFEVDELKARVRALIRR- 118

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++ RA    E   IR+  + +   ++ +   L RRE  +L  L+++ G    +  +  
Sbjct: 119 --ASGRASAHIEYKNIRIEPNAQQVFMEDKEVTLTRREYSLLVELVSHPGHVFTRDVLQQ 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +YG  D+ VE N +E HI  +RKKL + L    V + R +GY +D
Sbjct: 177 LLYGWGDD-VESNTLEVHIHHIRKKLFSGL----VRTVRGVGYIVD 217


>gi|322516885|ref|ZP_08069784.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           vestibularis ATCC 49124]
 gi|322124585|gb|EFX96062.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           vestibularis ATCC 49124]
          Length = 219

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 5/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR     P++ I+        +     G DD + KP   +E+ ARVAA  RR  +  +++
Sbjct: 66  IRDQVDCPILFITAKTQEVDIVQGLTYGADDYICKPFGVKELQARVAAHLRREHRERHHK 125

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G  +     ++  V+ ++  L + E  I ++L  N+G+  +K QI++ +YG  D+  
Sbjct: 126 LSLGDFQFDLSAQELYVENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYGYEDKGS 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              V E HI  +R KL++ +G +P+++   +GY   W+
Sbjct: 186 PTAVAE-HIKNIRAKLKD-VGQNPIETVWGIGYK--WH 219


>gi|165870463|ref|ZP_02215118.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|190568741|ref|ZP_03021645.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|164713958|gb|EDR19480.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|190560157|gb|EDV14138.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
          Length = 218

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|218778734|ref|YP_002430052.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760118|gb|ACL02584.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 229

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 7/208 (3%)

Query: 2   FVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           F+LI +D   + +G  A   + G      +  +           D+  ++  L GK    
Sbjct: 6   FILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDG-- 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R+ SQ+P+I ++        L   + G DD + KP   RE++ARV A+ RR  
Sbjct: 64  MEVCKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSN 123

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                + R   GPI +  D R+  V G    L   E  IL+ +M+   +  ++ ++    
Sbjct: 124 TPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLA 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL 205
            G   E  +   ++SHI  LRKK++  L
Sbjct: 184 IGSQFEGYDRT-IDSHIRNLRKKIKKAL 210


>gi|157372144|ref|YP_001480133.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157323908|gb|ABV43005.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 219

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 6/151 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127
           A   +P+I ++    +++ ++  DSG DD + KP    E+++RV A+ RR+   ++    
Sbjct: 66  AGQNIPIIILTARDRIESLVNSLDSGADDFLAKPFALPELISRVKAVNRRMAGFASQTWS 125

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +        +  E+  L ++E R+L  LM   G  V KT +  +++G  D +VE 
Sbjct: 126 LGNLYLDPINHQVTLDDELLLLSKKEYRLLHELMRCAGTVVRKTALEQSLFGHGD-SVES 184

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           N +E H+  LR+    K+G + + + R +GY
Sbjct: 185 NSLEVHMHNLRR----KIGKEKIITVRGIGY 211


>gi|22124591|ref|NP_668014.1| DNA-binding transcriptional regulator BasR [Yersinia pestis KIM 10]
 gi|45440430|ref|NP_991969.1| DNA-binding transcriptional regulator BasR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594821|ref|YP_069012.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806055|ref|YP_649971.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Antiqua]
 gi|108813411|ref|YP_649178.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Nepal516]
 gi|145600803|ref|YP_001164879.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Pestoides F]
 gi|153948791|ref|YP_001402561.1| BasR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|153997284|ref|ZP_02022384.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|162418181|ref|YP_001608275.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Angola]
 gi|165928165|ref|ZP_02223997.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937403|ref|ZP_02225966.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011292|ref|ZP_02232190.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214025|ref|ZP_02240060.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401228|ref|ZP_02306728.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420653|ref|ZP_02312406.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423155|ref|ZP_02314908.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470191|ref|ZP_02334895.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis FV-1]
 gi|170025956|ref|YP_001722461.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis YPIII]
 gi|186893830|ref|YP_001870942.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930521|ref|YP_002348396.1| DNA-binding transcriptional regulator BasR [Yersinia pestis CO92]
 gi|229839160|ref|ZP_04459319.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896649|ref|ZP_04511816.1| two-component system response regulator [Yersinia pestis Pestoides
           A]
 gi|229899724|ref|ZP_04514865.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903886|ref|ZP_04518999.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|270489125|ref|ZP_06206199.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294505362|ref|YP_003569424.1| two-component system response regulator [Yersinia pestis Z176003]
 gi|21957394|gb|AAM84265.1|AE013670_2 transcriptional regulatory protein, member of 2-component
           regulatory system [Yersinia pestis KIM 10]
 gi|30314186|gb|AAP12460.1| BasR/PmrA-like two-component system response regulator [Yersinia
           pseudotuberculosis (type O:1b)]
 gi|45435287|gb|AAS60846.1| two-component system response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51588103|emb|CAH19709.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777059|gb|ABG19578.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108777968|gb|ABG12026.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|115349132|emb|CAL22095.1| two-component system response regulator [Yersinia pestis CO92]
 gi|145212499|gb|ABP41906.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149288921|gb|EDM39001.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|152960286|gb|ABS47747.1| transcriptional regulatory protein BasR/PmrA [Yersinia
           pseudotuberculosis IP 31758]
 gi|162350996|gb|ABX84944.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           Angola]
 gi|165914508|gb|EDR33122.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919852|gb|EDR37153.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989676|gb|EDR41977.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204820|gb|EDR49300.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961459|gb|EDR57480.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049253|gb|EDR60661.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057325|gb|EDR67071.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752490|gb|ACA70008.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186696856|gb|ACC87485.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229679656|gb|EEO75759.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|229687216|gb|EEO79291.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695526|gb|EEO85573.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700427|gb|EEO88459.1| two-component system response regulator [Yersinia pestis Pestoides
           A]
 gi|262363427|gb|ACY60148.1| two-component system response regulator [Yersinia pestis D106004]
 gi|262367198|gb|ACY63755.1| two-component system response regulator [Yersinia pestis D182038]
 gi|270337629|gb|EFA48406.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355821|gb|ADE66162.1| two-component system response regulator [Yersinia pestis Z176003]
 gi|320013711|gb|ADV97282.1| two-component system response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 220

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 105/222 (47%), Gaps = 8/222 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD  L +   +AL  +  V      + E    LQ+S    +  I    +   +  
Sbjct: 3   LLIVEDDELLQRGIAMALTSEGYVCDCAATAAEAHSLLQTSQYSMI--ILDLGLPDQDGT 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L +  R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR +
Sbjct: 61  LLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELLARVRALIRRYQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  +   + +    +   +QG+   +  +E  IL  L+   G+ V +  +   +Y 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQGQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ +  N +E HI  LR+    KLG D + + R +GY ++
Sbjct: 181 WNDD-LSSNTLEVHIHNLRR----KLGKDRIRTVRGIGYRLE 217


>gi|300742621|ref|ZP_07072642.1| DNA-binding response regulator TrcR [Rothia dentocariosa M567]
 gi|300381806|gb|EFJ78368.1| DNA-binding response regulator TrcR [Rothia dentocariosa M567]
          Length = 247

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 10/183 (5%)

Query: 43  REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           R DV  ++  + G  G ++L+  RI + + +VP + ++   S+   ++   +G DD V K
Sbjct: 66  RPDVLVLDIMMPGFDGLELLD--RIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTK 123

Query: 102 PIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           P    E++ R+  + +R  V+  + AE   G + +  D R+    GE   L   +  +L 
Sbjct: 124 PFSMEEVMIRLHRLVQRSGVAAIDDAELVVGDLVLNQDTREVTRGGEPIALTATQFDLLR 183

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLG 217
           YLM N  + V+K+QI   ++  +D   + N+VE +IS LRKK+   +G +P + + R  G
Sbjct: 184 YLMENAKRVVSKSQILDNVWN-YDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAG 240

Query: 218 YSI 220
           Y I
Sbjct: 241 YVI 243


>gi|241765371|ref|ZP_04763345.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241364901|gb|EER59850.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 235

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 21/141 (14%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV------SNNRAETGPIRVFSD---GRDPEVQG 144
           G DD + KP   RE+ AR+ A+ RR  V      S   A +G    F D   G+   + G
Sbjct: 102 GADDYLTKPFSPRELAARIKAVLRRAAVPMGVVASAGSAHSG----FHDDAAGQRISLHG 157

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +   L RRE R+L  L+   G+   +  + +A +G  D    +  V++HI  LR KLR  
Sbjct: 158 QPLALTRREYRLLACLLHGAGRIHGRETLLAAAWG-NDSESTDRTVDTHIKTLRAKLRE- 215

Query: 205 LGFDP----VDSKRFLGYSID 221
              DP    + + R +GY +D
Sbjct: 216 --LDPTREYISTHRGMGYCLD 234


>gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
 gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
 gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
 gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
 gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
 gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
 gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
 gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
 gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
 gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 233

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 10/152 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ R IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRAD 120

Query: 119 LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           L V N   E+GP       +++  D    +  G+   L  RE  +L +L  + G+ + + 
Sbjct: 121 LVVENQVEESGPNELTIGELQILPDAFVAKKHGKELELTHREFELLHHLATHIGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIED 211


>gi|331268289|ref|YP_004394781.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
 gi|329124839|gb|AEB74784.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
          Length = 236

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 19/176 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           L + IR   ++P+I +S        +   + G DD + KP +  E++ARV A  RR    
Sbjct: 63  LVKKIREKYEIPVIMLSAKSEYSDKILGLELGADDYITKPFNAMEVVARVKAQLRRYYKY 122

Query: 121 ------VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 V NN  E    G +++ +        G   PL   E +I+ YLM + G+   K 
Sbjct: 123 HSIGDIVENNNEECLEYGSLKLNNSTCTLYKDGVEIPLTSTEYKIIFYLMNSCGRVFTKK 182

Query: 172 QIFSAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
           QIF  ++   DE    ++N +  HIS LR K+ N    +P  + + R LGY  ++N
Sbjct: 183 QIFEYVW---DEPFYGDDNAIMVHISNLRDKIEND-SKNPEYIKTIRGLGYKFNFN 234


>gi|295105976|emb|CBL03519.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 233

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 16/166 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S VP++  S   S    +   D+G DD + KP   RE+LA V A+ RR +      
Sbjct: 67  LRRASDVPIVFASARTSETDRIVGLDTGGDDYLPKPYSLRELLAHVNALLRRSRGRAGGE 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++     GP  +          G   PL  +E  +  YLMA  G+ V+K ++ + ++G 
Sbjct: 127 GADGALAAGPYVLDEAAGSMLKDGAAIPLSPKEFALARYLMAREGEVVSKDRLLAEVWGA 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL-----GYSID 221
           F E VE   V  H+S LR K+ +    DP     F      GY  D
Sbjct: 187 FSE-VEPQTVSVHMSWLRAKVED----DPAHPAHFKTVRGRGYCFD 227


>gi|88857480|ref|ZP_01132123.1| response regulator [Pseudoalteromonas tunicata D2]
 gi|88820677|gb|EAR30489.1| response regulator [Pseudoalteromonas tunicata D2]
          Length = 219

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           L ++ + ++ +P++ ++        +   D G DD + KP    E+LAR+  + RR+ K 
Sbjct: 63  LKQVRKKYATLPVLVLTARDGTDDKIKGLDLGADDYLAKPFEVTELLARLRVMTRRIGKF 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +++  E G + +          G    LPR+E  +L+ LM + G+  ++ Q+ + +Y  +
Sbjct: 123 ASSTLEVGDVALNLAANTVVSAGTGLELPRKEYMVLKALMEHPGRIQSREQLETKLYQ-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E V  N VE HI  LRKKL    GF  + + R +GY +
Sbjct: 182 GEEVSSNAVEVHIHHLRKKLPE--GF--IKTVRGIGYIV 216


>gi|313902686|ref|ZP_07836084.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466983|gb|EFR62499.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 258

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 46  VSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105
           V+A+   L+  G    E+   +R  S VP++ ++    +   L  F  G DD V KP   
Sbjct: 74  VAAVVLDLMLPGMDGWEVCERLRERSPVPILMLTARGEIHERLHGFHLGADDYVVKPFDP 133

Query: 106 REILARVAAIYRRLKVSNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
           REI+ARV A+ RR   +             E G + +    R   V G+  PL R E  +
Sbjct: 134 REIVARVRALLRRGMPAAGATRPPGAEPALELGRLVIDPGARTVTVDGQPVPLTRTEFDL 193

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L  L  +RG+ + + QI   + G  D   +E VV+SH+  LR+KL
Sbjct: 194 LYILARHRGQTLGRQQILDRLRG-GDYFGDERVVDSHVRNLREKL 237


>gi|293610947|ref|ZP_06693246.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826599|gb|EFF84965.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 224

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 11/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  MQVLKQIRQRAATPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSG 120

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V    A      ++G + +  +      +G+   L  RE  IL  LM++  K  +K  + 
Sbjct: 121 VEAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLE 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y  FD  V  N +E ++  LR     KLG D + + R LGY +
Sbjct: 181 DKLYD-FDSDVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 221


>gi|238918470|ref|YP_002931984.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri
           93-146]
 gi|238868038|gb|ACR67749.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri
           93-146]
          Length = 219

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 19/208 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEK 59
           +LI+D  L+ DG  A     G+S  GF    F +  Q     D +  +A ++     G  
Sbjct: 4   LLIEDDRLIGDGIKA-----GLSKMGFTVDWFTDGQQGMTALDSAPYDAVILDLSLPGID 58

Query: 60  VLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            LE+ R  R   H++ P++ ++   +L+  +     G DD + KP    E+ AR+ A+ R
Sbjct: 59  GLEILRCWREAGHAE-PVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIR 117

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   ++ +A+T    G + +        + G   PL  +E  +LE L+ N G+ + ++ I
Sbjct: 118 R---NHGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              +Y  +D+ V  N VE HI  LR+KL
Sbjct: 175 EEKLYS-WDDEVSSNAVEVHIHHLRRKL 201


>gi|228913968|ref|ZP_04077592.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926429|ref|ZP_04089501.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932679|ref|ZP_04095553.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944997|ref|ZP_04107358.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229090352|ref|ZP_04221595.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229120938|ref|ZP_04250180.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229172038|ref|ZP_04299603.1| Two-component response regulator [Bacillus cereus MM3]
 gi|229183591|ref|ZP_04310814.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228599834|gb|EEK57431.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228611381|gb|EEK68638.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228662598|gb|EEL18196.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228692935|gb|EEL46653.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228814666|gb|EEM60926.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826997|gb|EEM72757.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833253|gb|EEM78818.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845690|gb|EEM90717.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 218

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 226

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 5/143 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I I+     +  L  F+ G D+ V KP+  R ++AR  A+ +R + +
Sbjct: 64  VCRRIREKSDVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANALMKRTERT 123

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             R     + G + V  +     V GE+  L  +E  +L +L+ + GK +++  I +A++
Sbjct: 124 VGREAELLQYGELSVNREAHTVTVTGELINLSPKEYDLLLFLIKHDGKVLSRDYILNAVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G ++   +   V++HI KLR KL
Sbjct: 184 G-YEYLGDLRTVDTHIKKLRAKL 205


>gi|148654779|ref|YP_001274984.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566889|gb|ABQ89034.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 227

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 8/136 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV---FSDGRDPEVQGEVF 147
           FDSG DD + KP    E+LARV A+ RR  +  +  ++  +RV     D R    +    
Sbjct: 91  FDSGADDYLVKPFAFEELLARVRALGRRFSLQPD--DSNELRVGDLVLDLRHHTARRGTR 148

Query: 148 P--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           P  L   E  +LEYLM N G+ +++ QI   ++  +D  V+  +V+ +I+ LR+KL    
Sbjct: 149 PLDLTPTEWNLLEYLMRNAGQALSRQQILDHVWS-YDHDVQPQMVDVYIAYLRRKLNASG 207

Query: 206 GFDPVDSKRFLGYSID 221
             DP+ + R +GY ++
Sbjct: 208 ERDPIVTVRGVGYRLE 223


>gi|319902736|ref|YP_004162464.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
 gi|319417767|gb|ADV44878.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
          Length = 229

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE+ ARV A+ 
Sbjct: 61  GFKMASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVL 120

Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR       AE  P ++           +   + GE  PL ++E  IL  L+ N+G+  +
Sbjct: 121 RR--TQQAEAEQIPEQIIYQSLVLDIIKKKVSIDGEEAPLTKKEFEILLLLLQNKGRVFS 178

Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           +  I S I+   DE  V +  ++ +I++LRKK+
Sbjct: 179 REDILSRIWS--DEVYVLDRTIDVNITRLRKKI 209


>gi|270292922|ref|ZP_06199133.1| DNA-binding response regulator CiaR [Streptococcus sp. M143]
 gi|306829328|ref|ZP_07462518.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|270278901|gb|EFA24747.1| DNA-binding response regulator CiaR [Streptococcus sp. M143]
 gi|304428414|gb|EFM31504.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 224

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGDV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V     + +V+     L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 VVNLSTNEVKVEDTPVELLGKEFELLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+     + + + R +GY
Sbjct: 192 VYVSKVRKKLKGTAFAENLQTLRSVGY 218


>gi|146301142|ref|YP_001195733.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146155560|gb|ABQ06414.1| two-component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 224

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 17/170 (10%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +RA    VP++ ++   + +  +   +SG DD + KP    E+ ARV A++RR 
Sbjct: 60  IEICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRA 119

Query: 120 KVSNNRAETGPIRVFS------DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKT 171
                  ET  I V +      +GR   V+  GE   L  +E ++L YL  N G+ V++ 
Sbjct: 120 -----HQETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRD 174

Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI   ++ + FD  +  NVV+ +I+ LRKK+        + + + LGY I
Sbjct: 175 QILDNVWDINFD--MNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVI 222


>gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR
 gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 220

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR +   P+I I+        +   D G DD + KP    E+LAR+ A+ RR +
Sbjct: 61  LEICRQIRQNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR-Q 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  +   I +  D     V G+   L + E  +L  L+ NR   + + QI + ++G 
Sbjct: 120 PQKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +D  VE NVV+ +I  LR KL+   G D  +++ R +GY +
Sbjct: 179 YDTEVETNVVDVYIRYLRNKLK-PFGKDKCIETVRGVGYVV 218


>gi|308187501|ref|YP_003931632.1| transcriptional regulator [Pantoea vagans C9-1]
 gi|308058011|gb|ADO10183.1| Probable transcriptional regulator [Pantoea vagans C9-1]
          Length = 235

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L L R IR HS++P+I ++        L   + G DD + KP   RE++ARV  I 
Sbjct: 63  GTDGLTLCREIRRHSELPIIMVTARTEEIDRLLGLELGADDYICKPFSPREVVARVKTIL 122

Query: 117 RRLKVSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR+K S    ++  +      R F+  R+  +      L   E R+L+ L    GK  ++
Sbjct: 123 RRVKRSAEEPQSASLLRVDESRFFASWREKPLD-----LTPAEFRLLKTLSLEPGKVFSR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            Q+ + +Y  +   V +  ++SHI  LR+KL N
Sbjct: 178 EQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLEN 209


>gi|153931668|ref|YP_001382675.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937704|ref|YP_001386226.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226947497|ref|YP_002802588.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|152927712|gb|ABS33212.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933618|gb|ABS39117.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226842609|gb|ACO85275.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 258

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 84/159 (52%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR HS+VP+I IS   S    +   ++G DD + KP  +  +LA++  + RR+  S  + 
Sbjct: 93  IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 152

Query: 127 ETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +T  +++     +++    E +G    L + E  +L YL+ N  K V++  +   ++   
Sbjct: 153 DTDFLKIDDLILYTNKSMLEFKGRKTELSKNEFSLLLYLLKNINKIVSRDTLLEILWSDT 212

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  +++N +  ++++LRK+L      + +++KR  GY +
Sbjct: 213 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 250


>gi|152995826|ref|YP_001340661.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836750|gb|ABR70726.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 227

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 4/147 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
            P++ ++    ++  +   D+G DD + KP    E+ AR  A+ RR +  + N  E G I
Sbjct: 73  TPVLILTARDQIEDRIRLLDAGADDYLTKPFDFGELEARCRALLRRKQGYATNITEHGNI 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V  D R   + GE+  +  RE R+LE  + + G+ ++K +I   ++  F+E    N +E
Sbjct: 133 VVNRDSRQVFIDGELTVITNREFRLLEIFLGHLGRVLSKDEITDHLFN-FNETPGPNAIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++ +LRKK+    G   + + R +GY
Sbjct: 192 LYVGRLRKKMGQ--GDLVISTLRGIGY 216


>gi|167745694|ref|ZP_02417821.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
 gi|317472712|ref|ZP_07932026.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167655006|gb|EDR99135.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
 gi|316899790|gb|EFV21790.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 225

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 2/144 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S+VP+I ++        L  FD GVD+ ++KP   + ++AR+ AI RR + 
Sbjct: 65  EVVREIRKVSEVPIIMLTAKDQENDELQGFDLGVDEYISKPFSPKILVARIEAILRRTRQ 124

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    + G I +        +  +   L  +E  +L Y M N G+ + +  I + ++  
Sbjct: 125 QDGEVLKAGGIVLDEAAHMVTIDDKSIDLSFKEFELLSYFMKNEGRALTRENILNQVWN- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D   +   +++H+ KLR K+ +K
Sbjct: 184 YDYFGDARTIDTHVKKLRNKMGSK 207


>gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 7/151 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RI+R     P++ ++        +   + G DD V KP   RE++ARV A+ RR ++
Sbjct: 63  EVCRILRKEMNSPILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAMLRRTQI 122

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +       + G IRV  D     +   +  L  +E  +L +L  N+G   ++ Q+  
Sbjct: 123 METKPSEDKIIKIGDIRVDIDRHQASLAEVILELKPKEFDLLAFLARNKGLVFSREQLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            ++G +D A +   V+ HI  LR+K+ N  G
Sbjct: 183 KVWG-YDYAGDTRTVDVHIRWLRQKIENDPG 212


>gi|88797266|ref|ZP_01112856.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
 gi|88780135|gb|EAR11320.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
          Length = 233

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 22/166 (13%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ ++        +   + G DD + KP  HRE+LAR+ A+ RR+++  N+ 
Sbjct: 69  IRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIELDKNQK 128

Query: 127 ET--------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           E                  RV+SD       GE  P+   E ++L  LM+  GK V K  
Sbjct: 129 EDDNGILACNGVELNFDTYRVYSD-------GEHIPMTTSEFKVLRVLMSRAGKAVPKED 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++  + G    A + + ++ H+S +R+KL        + + R +GY
Sbjct: 182 LYLEVLGREIMAYDRS-IDMHVSNVRRKLGGTTEQSKIQTIRGIGY 226


>gi|313497538|gb|ADR58904.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 232

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 87/164 (53%), Gaps = 8/164 (4%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L + R +R+H Q P++ ++        +   D G DD V KP+  R +LAR+
Sbjct: 57  LMLPGEDGLSICRRVRSHYQGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARI 116

Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            A+ RR +  +++ +    G +R+ +  R+  +  ++  L   E  +L  L +N G+ + 
Sbjct: 117 QALLRRSETVDSKRQDLAFGALRIDNRLREAHLGEQLIELTGAEFDLLWLLASNAGRVLT 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           + QIF+A+ G+  +  ++  ++  ISK+R     K+G DP+  +
Sbjct: 177 REQIFTALRGVGYDG-QDRSIDIRISKIRP----KIGDDPLQPR 215


>gi|296444506|ref|ZP_06886471.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296258153|gb|EFH05215.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 225

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 10/150 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  LP +  A   + ++ I+    L   +   ++G DD + KP    E++AR+ A  
Sbjct: 57  GDGISLLPEVRAAQPGIRVMMITALDGLTEKISGLEAGADDYLTKPFQGAELIARIRACL 116

Query: 117 RRLKVSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR           PIRV +     D  +  V G    L RRE  +L  LM    +  A+ 
Sbjct: 117 RR----PGGDVLPPIRVGAVAFDLDSNEVTVAGRTIILTRREMMLLRSLMQRASRVAARE 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +   IYG+ DE V+ N ++S +S+LRK+L
Sbjct: 173 TLIQEIYGV-DEEVQANALDSIVSRLRKQL 201


>gi|82778365|ref|YP_404714.1| DNA-binding transcriptional regulator QseB [Shigella dysenteriae
           Sd197]
 gi|309785329|ref|ZP_07679960.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617]
 gi|81242513|gb|ABB63223.1| putative 2-component transcriptional regulator [Shigella
           dysenteriae Sd197]
 gi|308926449|gb|EFP71925.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617]
          Length = 219

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQTSNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|225026517|ref|ZP_03715709.1| hypothetical protein EUBHAL_00766 [Eubacterium hallii DSM 3353]
 gi|224956131|gb|EEG37340.1| hypothetical protein EUBHAL_00766 [Eubacterium hallii DSM 3353]
          Length = 224

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP++ +S        +   + G D+ + KP     + A+V A+ RR    + + 
Sbjct: 67  IRKISSVPILFLSSMNDNMNIVMAMNMGGDEFIEKPFDLNVLTAKVQALLRRAYSFQGNV 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + +  +      +GE   L + E RIL+ LM N GK VA+  I + ++   DE
Sbjct: 127 NVLEHEGMLLNLNDASLSYKGEKISLTKNEFRILQMLMENAGKIVARDDIIARLWE-SDE 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++N +  ++++LRKKL N      + +K+ +GY +D
Sbjct: 186 FIDDNTLTVNVARLRKKLENAGMEGRIKTKKGIGYYLD 223


>gi|188587672|ref|YP_001919525.1| DNA-binding response regulator [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188497953|gb|ACD51089.1| DNA-binding response regulator [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 227

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 7/163 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RL 119
           L  I +      +I ++    L   L  F+ G +D + KP    E+ AR+ AI +   ++
Sbjct: 63  LSYISKKTLNTGVIILTAKEELGDKLKAFNLGANDYLTKPFFMEELKARIIAILKGMGKI 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K SN   E   +++    +   +  E   L  +  ++LEYL+ N+G  + K QIF  I G
Sbjct: 123 KKSN-ILEFKNMQIDMKAKTVYINNEELELNEKLYKLLEYLVINKGVLLFKEQIFDNICG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
              +A  E ++E +IS+LRK+L +K  +D  + +KR +GY +D
Sbjct: 182 YNSDAATE-IIEVYISRLRKQL-SKYNYDRYLVTKRGMGYLLD 222


>gi|163741296|ref|ZP_02148688.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161385649|gb|EDQ10026.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 225

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 13/158 (8%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A    PLI ++   +++  ++  ++G DD ++KP    E+LAR+ A+ RR +     AET
Sbjct: 69  ARITTPLILLTALGAVEDRVEGLEAGADDYLSKPFAMTELLARITALGRRGRAEA--AET 126

Query: 129 GPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
              R+   G D ++        G    L  +E R+LE LM ++G+   +  +   ++ + 
Sbjct: 127 A-TRLSHRGLDLDLLSQTCACNGTTVLLNPKEFRLLEVLMRSKGRIQTRAMLLERVWDIN 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD +   +VVE+H+S+LR K+    G + + + R  GY
Sbjct: 186 FDPST--SVVETHMSRLRNKIEKPFGLEFIKTVRGSGY 221


>gi|330505652|ref|YP_004382521.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328919938|gb|AEB60769.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 229

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 102/213 (47%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G+  LE E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++     S +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   S+  A   PI V     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRAGPSDGEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|147676383|ref|YP_001210598.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272480|dbj|BAF58229.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 232

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S +P+I ++     Q  +  FD+G DD V KP    E+L RV AI RR  
Sbjct: 64  FEVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILRRSH 123

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            S    + GP+  F D       +   V+G    L   E ++L +L  N GK +    + 
Sbjct: 124 PSEEFPK-GPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVITHEDLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           + ++G  +   E + + ++IS LRKK+ +    DP D K  LG
Sbjct: 183 TRVWGA-EYRNELHYLRNYISSLRKKIED----DPGDPKYILG 220


>gi|94310594|ref|YP_583804.1| DNA-binding response regulator CreB [Cupriavidus metallidurans
           CH34]
 gi|93354446|gb|ABF08535.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Cupriavidus metallidurans CH34]
          Length = 232

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +   + G DD V KP   RE+ ARV  I RR K 
Sbjct: 64  EVCRSMRTFSDVPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRAKG 123

Query: 122 SNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +++     P+          +DG     +G    L R E R+L  L+ + G+  A++Q+ 
Sbjct: 124 ASDSPHPSPMAQEEADFVHDTDGARLAYRGRWLDLTRYEYRLLALLVQHPGRIFARSQLM 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             ++    + V+   V++H+  LR KLR      DP+ + R +GYS++
Sbjct: 184 DLVWHDSLDTVDRT-VDTHVKTLRAKLREIAPAGDPIRTHRGMGYSLE 230


>gi|23014270|ref|ZP_00054096.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 229

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 3/139 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I ++        L   + G DD + KP   RE++AR+ +++RR++  N 
Sbjct: 68  RELRRFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRRMEWGNP 127

Query: 125 RAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              +GP ++  D  G    + G   PL   E R++  L ++ G+   + QI    Y   D
Sbjct: 128 VPASGPAQLEIDDAGLRICINGNRLPLTPTEFRLMRLLASSPGRIYTRAQILDLAYH-GD 186

Query: 183 EAVEENVVESHISKLRKKL 201
           + V + +++SH+  +RKK+
Sbjct: 187 QDVSDRIIDSHVKNIRKKI 205


>gi|329908873|ref|ZP_08274974.1| two component transcriptional regulator, winged helix family
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546575|gb|EGF31550.1| two component transcriptional regulator, winged helix family
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 219

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPI 131
            P+I ++    +   +   ++G DD + KP    E+ AR+AA+ RR   + N +   G +
Sbjct: 73  TPVIILTARDQISDRIAGLNAGADDYLVKPFDLFELSARIAAVARRYGGNPNPQVHLGEL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V    R  +  G V  L  RE  + E L+   G  ++K Q+   +Y  F   +E N +E
Sbjct: 133 QVNLSDRSVQRAGVVVELTAREWALFEALLQRPGALLSKPQLEERLYA-FGAEIESNTIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            HIS LRK    KLG+  + + R +GY +
Sbjct: 192 VHISHLRK----KLGYQVIATVRGVGYRL 216


>gi|307823236|ref|ZP_07653466.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307736011|gb|EFO06858.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 219

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 112/240 (46%), Gaps = 45/240 (18%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60
            +L++D  ++ +G +     +G+ +EG+      +WL +    D    EA  I   E + 
Sbjct: 3   LLLVEDDEILGEGLV-----EGLKMEGYAV----DWLTNGKLAD----EALKINSYELIV 49

Query: 61  --LELPR-----IIRA----HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
             L LP      I++A      + P++ ++   ++   +   DSG DD V KP    E+ 
Sbjct: 50  LDLNLPDMEGLDILKALRTRKDETPVMVLTAKDTVPDRVLGLDSGADDFVIKPFELDEVC 109

Query: 110 ARVAAIYRRLKVSNNRAETGP-IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMAN 163
           AR+ A+ RR     N   + P I       DP         E   L ++E  IL +LM+N
Sbjct: 110 ARLRALARR-----NEGRSVPNIEYKGIVLDPASHQVTWNDEKVDLSQKEFEILSFLMSN 164

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
            G+ +++ ++  ++Y  +D  VE N VE HI  LRKKL      DP  + + R +GY ID
Sbjct: 165 IGRVISRARLEESLYS-WDSDVESNTVEVHIHHLRKKL------DPSIIRTVRGVGYIID 217


>gi|229134404|ref|ZP_04263217.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229168317|ref|ZP_04296042.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228615143|gb|EEK72243.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228649025|gb|EEL05047.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 119 LKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + VS  N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G +D   ++  V++HI KLR KL +K
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209


>gi|160898586|ref|YP_001564168.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364170|gb|ABX35783.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 231

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R  R HS  P+I ++        L   + G DD + KP   RE++ARV A+ RR  
Sbjct: 63  LDILRQFRPHSASPVILLTARVEEMDRLLGLELGADDYICKPFAPREVVARVKAVLRR-- 120

Query: 121 VSNNRAETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS- 175
                A  GP    + +  +     + G V PL +RE  +L+ LM   G+  ++ Q+   
Sbjct: 121 ----SAGPGPAQQRLTLLPEQGRAMLNGSVLPLTKRELTLLQALMRQPGRLYSRAQLLEL 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR 202
           A     D  V E  ++SHI  LRKKL+
Sbjct: 177 ACADTLD--VNERAIDSHIKNLRKKLK 201


>gi|161520240|ref|YP_001583667.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353582|ref|YP_001949209.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|160344290|gb|ABX17375.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189337604|dbj|BAG46673.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 220

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LASLRRRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFALEELLARIRAVNRR---H 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             RA+T    GP+R+        +  +  PL  +E  +L  LM   G  +++ Q    +Y
Sbjct: 120 AGRAQTTLAIGPLRLDPVKHQVWLHDDEVPLSPKEFVLLHELMREPGAVISREQFEERLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + E +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216


>gi|158320237|ref|YP_001512744.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140436|gb|ABW18748.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 224

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 3/152 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRA 126
           +++  VP++ ++   +++     F  G DD + KPI+  E+L RVAA+ RR  + N +R 
Sbjct: 69  KSNINVPILMVTAKETIEDKKRGFSVGTDDYMVKPINLDEMLLRVAALLRRSNIVNEHRM 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +  +      +GE   LP++E  +L  L+++  +   + Q+   I+G+ D   +
Sbjct: 129 VIGEVALDYNTLTVSKKGESIVLPKKEFYLLFKLLSHPKQIFTRQQLMDEIWGM-DAETD 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E  V+ HI +LR+K  +   F+ + + R LGY
Sbjct: 188 ERTVDVHIKRLREKFGDFSEFEII-TVRGLGY 218


>gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 220

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 15/166 (9%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LDVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + R+++  IR+ +   DP      ++G    L  RE  +LE L+A  G  ++K+Q+ 
Sbjct: 119 --QSGRSDS-TIRLGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +YG + E +  N VE +I  LRK    KLG D + + R LGY I
Sbjct: 176 EKMYG-WGEEIGSNTVEVYIHALRK----KLGADLIRNVRGLGYMI 216


>gi|73538992|ref|YP_299359.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
 gi|72122329|gb|AAZ64515.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
          Length = 219

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 10/168 (5%)

Query: 55  GKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+G   L+  R IR+  S VP+I ++    +   +   ++G DD + KP    E+ ARV+
Sbjct: 57  GRG---LDFLREIRSGGSTVPVIILTALDQVSNRIAGLNAGADDYLVKPFDLSELSARVS 113

Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR   + N   T G + + + GR          L   E  +LE L+   G  V++++
Sbjct: 114 AVSRRYSGNPNPLVTLGELHIDTAGRSVMRGDAHVDLTASEWALLEALIQRPGMIVSRSR 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +Y  F+E +  N +E H+S+LRK    KLG D +++ R LGY +
Sbjct: 174 LEDRLYS-FNEEIGSNTIEVHMSRLRK----KLGADVIETLRGLGYRL 216


>gi|311112536|ref|YP_003983758.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
 gi|310944030|gb|ADP40324.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
          Length = 279

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 10/183 (5%)

Query: 43  REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           R DV  ++  + G  G ++L+  RI + + +VP + ++   S+   ++   +G DD V K
Sbjct: 98  RPDVLVLDIMMPGFDGLELLD--RIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTK 155

Query: 102 PIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           P    E++ R+  + +R  V+  + AE   G + +  D R+    GE   L   +  +L 
Sbjct: 156 PFSMEEVMIRLHRLVQRSGVAAIDDAELVVGDLVLNQDTREVTRGGEPIALTATQFDLLR 215

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLG 217
           YLM N  + V+K+QI   ++  +D   + N+VE +IS LRKK+   +G +P + + R  G
Sbjct: 216 YLMENAKRVVSKSQILDNVWN-YDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAG 272

Query: 218 YSI 220
           Y I
Sbjct: 273 YVI 275


>gi|260662240|ref|ZP_05863136.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|260553623|gb|EEX26515.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 187

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 3/146 (2%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132
           P++ ++   ++      F SG DD + KP+   E+  RVAA+ RR K+++ R  T G   
Sbjct: 37  PVLMLTAKTTITDKTTGFTSGADDYLTKPVDLAELKLRVAALLRRAKINSARQITIGQTI 96

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  +     + G    L ++E  +L  L++   K   + Q+   I+G+ D A  E+ V++
Sbjct: 97  LNEENFTLTINGHSTTLAKKEFLLLFTLLSYPNKIFTQAQLLDQIWGI-DSASTEDTVKT 155

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218
           H+SK+RK L++      + + R LGY
Sbjct: 156 HVSKVRKLLKDSNDV-KITTIRGLGY 180


>gi|154496626|ref|ZP_02035322.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
 gi|150274259|gb|EDN01350.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 18/206 (8%)

Query: 27  EGFNSLEFEEWLQSS--AREDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           +GF  LE E+   +   ARE    +    ++  G    EL R +R +S++P++ +S    
Sbjct: 25  DGFRVLEAEDGTTALVLAREHAPDMAILDIMMPGMNGFELTRALRKYSEIPILILSAKSQ 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS-DGRDPEV 142
               +   + G DD + KP +  EI+ARV A  RR   + N ++   +R  S D    ++
Sbjct: 85  DNDKILGLNLGADDYIAKPFNPVEIVARVKAQLRR--AARNSSDVITVRELSLDTAAFQL 142

Query: 143 --QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
              G   PL   E +IL  LM + G+   K Q++    G + E  ++N +  HISKLR+K
Sbjct: 143 TKSGVPIPLTPMEYKILALLMRSPGRIFTKIQLYEGAIGNYFEG-DDNTMMVHISKLREK 201

Query: 201 LRNKLGFDPVDSK-----RFLGYSID 221
           + +    DP + +     R LGY ++
Sbjct: 202 IED----DPRNPRYIITVRGLGYKLE 223


>gi|296156679|ref|ZP_06839517.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295893278|gb|EFG73058.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 223

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 6/150 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIR 132
           P++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR        A+ G + 
Sbjct: 74  PVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRSHGQEPLHAQCGTLL 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
             S  R   + GE   L  RER +LE L+   G+ + K  +   I+GL DE+V  + +E 
Sbjct: 134 YDSVDRGFTLDGEALALTPRERSVLEVLILRNGRAINKDTLSEKIFGL-DESVNADAIEI 192

Query: 193 HISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++ +LR+KL R+ +G   + + R LGY ++
Sbjct: 193 YVHRLRRKLERSSVG---IVTLRGLGYLLE 219


>gi|302873321|ref|YP_003841954.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688511|ref|ZP_07630957.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576178|gb|ADL50190.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 226

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 6/145 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R  S  P+I IS    + T +D    G DD + KP    E+LAR+ A  RR   
Sbjct: 62  EILKEMRNFSDTPVIVISAKDMVGTKIDILKLGADDYITKPFDLGEVLARIEATLRRCHK 121

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +V  N+  +   I +  + +   V G    L  +E  ILE L+  +GK   K  ++ +I+
Sbjct: 122 QVHINKVIKYKDIVLDDNSKHVSVNGVEIELTAKEYMILEMLIKYQGKVFTKANLYESIW 181

Query: 179 GLFDEAV-EENVVESHISKLRKKLR 202
              +E + ++N V++H+S LR KL+
Sbjct: 182 K--EEYLGDDNAVKTHVSNLRSKLQ 204


>gi|228909410|ref|ZP_04073235.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850187|gb|EEM95016.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 225

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G +D   ++  V++HI KLR KL +K
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209


>gi|146279695|ref|YP_001169853.1| histidine kinase A domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557936|gb|ABP72548.1| histidine kinase A domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 220

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++ DG  A     G S E   SLE       + R D   ++  ++  G  + 
Sbjct: 3   ILVVEDDAVLSDGLRAGLRIAGFSPETVASLEDARAALLAGRFDAMVLD-LMLPDGSGLD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L  +  A   VP++ ++    L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  LLVEVRSAGLAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPAA 121

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S  R A  G     +        G V PL  RE  +L  LM      ++K Q+   +YG
Sbjct: 122 LSETRPAWNGVTLDLAALVASRADGPV-PLSPREFSVLRALMDRPRAVLSKAQLEEQLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N VE HI     KLR+KLG D +++ R  GY +
Sbjct: 181 -WQEEIESNAVEVHI----HKLRSKLGHDFIETVRGAGYRL 216


>gi|30263549|ref|NP_845926.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42782670|ref|NP_979917.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47528946|ref|YP_020295.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47567882|ref|ZP_00238589.1| two-component response regulator [Bacillus cereus G9241]
 gi|49186400|ref|YP_029652.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49477754|ref|YP_037680.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141934|ref|YP_084893.1| transcriptional regulatory protein [Bacillus cereus E33L]
 gi|118478844|ref|YP_895995.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|165870959|ref|ZP_02215610.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167636464|ref|ZP_02394762.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640572|ref|ZP_02398834.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688455|ref|ZP_02879663.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708146|ref|ZP_02898593.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652476|ref|ZP_02934943.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564567|ref|ZP_03017488.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196034040|ref|ZP_03101450.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196038467|ref|ZP_03105776.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044699|ref|ZP_03111934.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206975347|ref|ZP_03236260.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217961002|ref|YP_002339570.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218904728|ref|YP_002452562.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222097054|ref|YP_002531111.1| transcriptional regulatory protein [Bacillus cereus Q1]
 gi|225865582|ref|YP_002750960.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227813568|ref|YP_002813577.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228916230|ref|ZP_04079800.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928652|ref|ZP_04091688.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228934872|ref|ZP_04097703.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947215|ref|ZP_04109509.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228986689|ref|ZP_04146819.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229123117|ref|ZP_04252324.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229140213|ref|ZP_04268771.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|229157173|ref|ZP_04285253.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|229185835|ref|ZP_04313008.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229197708|ref|ZP_04324428.1| Two-component response regulator [Bacillus cereus m1293]
 gi|229604587|ref|YP_002867793.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686167|ref|ZP_05150026.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254726066|ref|ZP_05187848.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738640|ref|ZP_05196343.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744802|ref|ZP_05202480.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254752958|ref|ZP_05204994.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759230|ref|ZP_05211256.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301055087|ref|YP_003793298.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30258184|gb|AAP27412.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42738596|gb|AAS42525.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47504094|gb|AAT32770.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47555360|gb|EAL13704.1| two-component response regulator [Bacillus cereus G9241]
 gi|49180327|gb|AAT55703.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49329310|gb|AAT59956.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975403|gb|AAU16953.1| transcriptional regulatory protein [Bacillus cereus E33L]
 gi|118418069|gb|ABK86488.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713170|gb|EDR18696.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511440|gb|EDR86824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528123|gb|EDR90915.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126954|gb|EDS95834.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667625|gb|EDT18380.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082150|gb|EDT67217.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190563884|gb|EDV17848.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195993114|gb|EDX57072.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196024734|gb|EDX63406.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196030875|gb|EDX69473.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206746249|gb|EDZ57643.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065228|gb|ACJ79478.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218538759|gb|ACK91157.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221241112|gb|ACM13822.1| transcriptional regulatory protein [Bacillus cereus Q1]
 gi|225789063|gb|ACO29280.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007659|gb|ACP17402.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228585785|gb|EEK43883.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228597547|gb|EEK55194.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228626237|gb|EEK82984.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228643299|gb|EEK99572.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228660411|gb|EEL16044.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228773020|gb|EEM21456.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812462|gb|EEM58789.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824772|gb|EEM70573.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830971|gb|EEM76572.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843428|gb|EEM88506.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268995|gb|ACQ50632.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300377256|gb|ADK06160.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 225

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G +D   ++  V++HI KLR KL +K
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209


>gi|30021702|ref|NP_833333.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|75760689|ref|ZP_00740714.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206969120|ref|ZP_03230075.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218235232|ref|YP_002368413.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218898694|ref|YP_002447105.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228902100|ref|ZP_04066264.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228922307|ref|ZP_04085614.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228940685|ref|ZP_04103248.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228953868|ref|ZP_04115907.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228959784|ref|ZP_04121459.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228966495|ref|ZP_04127548.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228973603|ref|ZP_04134185.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980161|ref|ZP_04140475.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|229047283|ref|ZP_04192882.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229071099|ref|ZP_04204325.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229075494|ref|ZP_04208483.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|229080805|ref|ZP_04213323.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229098043|ref|ZP_04228993.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229104130|ref|ZP_04234804.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229111024|ref|ZP_04240583.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229117061|ref|ZP_04246443.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|229128872|ref|ZP_04257848.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229146167|ref|ZP_04274542.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229151795|ref|ZP_04279994.1| Two-component response regulator [Bacillus cereus m1550]
 gi|229179886|ref|ZP_04307232.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229191685|ref|ZP_04318664.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|296504106|ref|YP_003665806.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29897257|gb|AAP10534.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|74491807|gb|EAO54998.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206736161|gb|EDZ53319.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218163189|gb|ACK63181.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218541903|gb|ACK94297.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228591847|gb|EEK49687.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228603567|gb|EEK61042.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228631608|gb|EEK88238.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228637226|gb|EEK93681.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228654577|gb|EEL10439.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228666465|gb|EEL21925.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228672387|gb|EEL27672.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228679337|gb|EEL33540.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228685480|gb|EEL39408.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228702539|gb|EEL55007.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228707743|gb|EEL59927.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228712039|gb|EEL63988.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228724025|gb|EEL75371.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228779519|gb|EEM27772.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228786064|gb|EEM34061.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228793217|gb|EEM40767.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228799914|gb|EEM46856.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805836|gb|EEM52416.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228818929|gb|EEM64991.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228837362|gb|EEM82696.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228857526|gb|EEN02022.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|296325158|gb|ADH08086.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G +D   ++  V++HI KLR KL +K
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209


>gi|291086571|ref|ZP_06356184.2| QseB [Citrobacter youngae ATCC 29220]
 gi|291067819|gb|EFE05928.1| QseB [Citrobacter youngae ATCC 29220]
          Length = 268

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 52  ILLVEDDTLIGDGLKTGLSKMGFSIDWFTEGRQGKEALYSAPYDAVILDLTLPGIDGRDI 111

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  RA+  Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 112 L---REWRANGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRA 168

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +          GE   L  +E  +LE LM N+G+ + +  I   +Y
Sbjct: 169 SGQASNTLRHGEVTLDPGALVATAAGEPLSLKPKEFALLELLMRNKGRVLPRKLIEEKLY 228

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 229 -TWDENVSSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 265


>gi|238919096|ref|YP_002932610.1| DNA-binding transcriptional regulator BaeR [Edwardsiella ictaluri
           93-146]
 gi|238868664|gb|ACR68375.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 243

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 1/158 (0%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 67  LMLPGVDGLTLCREIRRTSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I RR  + +  +E  P+ +         + ++  L + E R+L+ L    G   ++ Q
Sbjct: 127 KTILRRCMLQDTLSEPTPLLIDESRFQASYRQQLLDLTQAEFRLLKTLATQPGCVFSREQ 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           + + +Y  +   V +  V+SHI  LR+KL    G +P+
Sbjct: 187 LLNHLYDDY-RVVTDRTVDSHIKNLRRKLEPVEGDEPL 223


>gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 244

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 13/172 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R  RA ++  P+I IS   S    +   + G DD + KP    E++AR
Sbjct: 56  LMLPGVDGLEICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVAR 115

Query: 112 VAAIYRRL-------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           V A+ RR+       +    R E G +R+    R+  V G    L  RE  +L +   + 
Sbjct: 116 VKALLRRVEALSRDTRAEAGRVEVGGLRLDPLTREAAVDGAAIDLTPREFDLLYHFARHP 175

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           GK  ++T + +A++G   E   E+ V +HI++LR K+      DP    R L
Sbjct: 176 GKAFSRTDLLNAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAQPARIL 222


>gi|256423914|ref|YP_003124567.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256038822|gb|ACU62366.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 224

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 4/169 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++LE  + I     V +I   D  S+   +   + G DD + KP H  E+ ARV +
Sbjct: 57  GDGLQILEHLKHIGKSENVIIISAKD--SVDDKIRGLNLGADDYLTKPFHIAELNARVKS 114

Query: 115 IYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR      N  E   I+V  +     V      L R+E  IL YLMANR + ++K+ +
Sbjct: 115 VLRRKTFEGKNILECANIKVDLNEFMAAVNDVPVALNRKEFDILVYLMANRNRLISKSSL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G   D+A +   + S I  LRKKL++      + +   +GY ++
Sbjct: 175 AEKVWGDYMDDADDFEFLYSQIKNLRKKLKDSGAEVKISAMYGMGYKLE 223


>gi|227487201|ref|ZP_03917517.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092859|gb|EEI28171.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 227

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 19/198 (9%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+G+ A+   DG  +L  FN            + D+  +   L+  G    ++ R +R
Sbjct: 21  LKKEGFDAIIATDGRTALVEFN------------KNDIDLVLLDLMLPGMSGTDVCRRLR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSN 123
             S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR       V++
Sbjct: 69  QVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDSDGAVAD 128

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E G + +  +     V G+   +P +E  +LEYL+ N G+ + + Q+   ++G  D 
Sbjct: 129 QILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRVWG-ADY 187

Query: 184 AVEENVVESHISKLRKKL 201
             +   ++ H+ +LR K+
Sbjct: 188 VGDTKTLDVHVKRLRSKI 205


>gi|261339001|ref|ZP_05966859.1| hypothetical protein ENTCAN_05206 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318832|gb|EFC57770.1| DNA-binding response regulator CreB [Enterobacter cancerogenus ATCC
           35316]
          Length = 229

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 16/226 (7%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGE-KV 60
           L++D   + D  I +        EGF    FE  L    +AR  V A+    +G  +   
Sbjct: 8   LVEDEISIADTLIYMLQQ-----EGFEVKAFERGLPVLEAARRQVPALAILDVGLPDISG 62

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  I RR+
Sbjct: 63  FELCRQLLARHPSLPVLFLTARSDEVDKLLGLEMGADDYVAKPFSPREVCARVRTILRRM 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + S   ++   I  F +  +P  +    GE   L R E  +L+ L+   G+  ++ Q+  
Sbjct: 123 QKSAAPSDILRIGQF-ELNEPAARIHWCGEPLLLTRYEFLLLKTLLHAPGRVFSRQQLMD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++G   ++ +   V++HI  LR KLR       P+ + R +GYS+
Sbjct: 182 LVWGEDGDSFDRT-VDTHIKTLRAKLRAVNAEISPISTHRGMGYSL 226


>gi|59713394|ref|YP_206169.1| transcriptional regulator [Vibrio fischeri ES114]
 gi|59481642|gb|AAW87281.1| transcriptional regulator [Vibrio fischeri ES114]
          Length = 228

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 3/131 (2%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLP 150
           SG DD + KP    E+ AR+  + RR +V NN  +   G  ++    +  E   +   L 
Sbjct: 93  SGADDYLVKPFSFDELHARILTVGRRGQVKNNDDDINIGLFKLDLAKKTLEFDTKFIDLT 152

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           + E +I+E L  ++ + +    I   + G FD ++ +N +ESH+S +RKK++   G  PV
Sbjct: 153 KNEYKIIECLFLSKNQVMTTENISDYVVGSFD-SLSKNTIESHLSSVRKKVKALGGELPV 211

Query: 211 DSKRFLGYSID 221
            +KR  GY ++
Sbjct: 212 KNKRGFGYYVE 222


>gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L]
 gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L]
 gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 63  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 123 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204


>gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
          Length = 228

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 12/169 (7%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +R+  +   +P+I ++        +   D+G DD + KP   +E+ ARV A+ R
Sbjct: 62  IEVCRRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVLR 121

Query: 118 RLK--VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R++  ++ +    G I   RV       +++  + P    E R+L+YLM + G+  ++ Q
Sbjct: 122 RIRPGLAEDSVTVGDITIDRVAHRVVRSDLEIHLGPT---EFRLLDYLMQHPGRVFSREQ 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  A++G  D  VE   V+ HI +LRK L      DP+ + R  GY+++
Sbjct: 179 LLDAVWG-SDVYVEARTVDVHIGRLRKALSAGGEHDPIRTVRSAGYALN 226


>gi|299768936|ref|YP_003730962.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
 gi|298699024|gb|ADI89589.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
          Length = 222

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  MQVLKQIRQRAVTPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRTG 120

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V    A      + G + +  +      +G+   L  RE  IL  LM++  K  +K  + 
Sbjct: 121 VEAQLANHEQLLQNGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLE 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y  FD  V  N +E ++  LR     KLG D + + R LGY +
Sbjct: 181 DKLYD-FDSEVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 221


>gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 233

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 32/238 (13%)

Query: 1   MFVLIDDRALV--------KDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAI 49
           + V+ DD ALV        ++GY   +A+ GD     E +  ++  EW       DV  +
Sbjct: 5   ILVVEDDHALVSLLTHNLEREGYETGVAMDGD-----EAWRKIQSGEW-------DVILL 52

Query: 50  EAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
           +  L  +    LE+ R +R      P+I ++        +   + G DD V KP   RE+
Sbjct: 53  DVMLPHRDG--LEICRQLRQEKNYTPVIMLTARDDEIDRVVGLEIGADDYVTKPFSVREL 110

Query: 109 LARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           +AR+  I RR    L       E GPI +  +  +  ++G+   L R+E  +L  L+ N+
Sbjct: 111 MARIKVILRRRNLDLYEGKPEIEAGPILIRPENYEVFLKGQKVDLTRKEFELLTLLVQNK 170

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           G+ + +  +   ++  + + V+  V++ H+SKLR+KL +  L    +++ R +GY  +
Sbjct: 171 GRVLKRDYLLQRLWD-YGDTVKTRVLDVHVSKLREKLASYGLKGGGIETVRGIGYKFE 227


>gi|256845527|ref|ZP_05550985.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294785176|ref|ZP_06750464.1| DNA-binding response regulator ArlR [Fusobacterium sp. 3_1_27]
 gi|256719086|gb|EEU32641.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294486890|gb|EFG34252.1| DNA-binding response regulator ArlR [Fusobacterium sp. 3_1_27]
          Length = 227

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           DV  ++  L  K  K  E+ + +R  +  P+I I+   S+   ++  D G +D + KP  
Sbjct: 50  DVVLLDLMLPKKSGK--EVCQELRKLADTPIIVITAKDSVLDKVELLDLGANDYICKPFA 107

Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
             E+LAR+    R  + SNN+       I++    +   +  E   L + E  ILEY M 
Sbjct: 108 MEELLARIRVSTRNKENSNNKHFYLENEIKMDILAKKVFLNEEEIALTKTEFLILEYFMK 167

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           N+G   ++ +I   ++G +D   EE +V+ +I+ LRKK+ +K  +  + + R  GY
Sbjct: 168 NKGLSCSREKIIIDVWG-YDFDGEEKIVDVYINSLRKKIDSKSKY--IHTIRGFGY 220


>gi|221069740|ref|ZP_03545845.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714763|gb|EED70131.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 270

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETG 129
           Q P++ +S   +    +    +G DD + KP    E+ AR+ A+ RR ++       +  
Sbjct: 110 QTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQIPAPTREMQVA 169

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            +RV    R  E  G+   L  RE R+L +LM +  + V +T +  +++   FD   + N
Sbjct: 170 DLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVWDYRFDP--QTN 227

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V++ HIS+LR K+        + + R +GYS+
Sbjct: 228 VIDVHISRLRSKVDKGFATPLIHTVRGVGYSL 259


>gi|94495738|ref|ZP_01302318.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
 gi|94425126|gb|EAT10147.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
          Length = 233

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +V    R +   + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ 
Sbjct: 62  GIEVCRRLRRMTGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVL 121

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR++     A  G    F+D      G      G+V PL   E R+L++ + + G   ++
Sbjct: 122 RRVRP----ALAGETLTFADVEMDTVGHKVRRSGQVIPLGPTEFRLLKHFLEHPGWVFSR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
            ++  +++G  D  +E   V+ HI +LRK +     + D + + R  GY++D
Sbjct: 178 ERLLDSVWGQ-DSDIELRTVDVHIRRLRKAINADGQYQDIIRTVRSAGYALD 228


>gi|254775729|ref|ZP_05217245.1| two component system response regulator [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 240

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 5/185 (2%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           E L    R D+  ++  L G+      L  +IR    + ++ I+    L   L   D G 
Sbjct: 56  EELLDGIRPDLVVLDVMLPGR--DGFALIDVIRDWGDIGIVLITARDGLPDRLRGLDGGA 113

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           DD V KP    E+++RV A+ RR        + G + +          G    L   E R
Sbjct: 114 DDYVIKPFELAELVSRVGAVLRRRGRLPQVIQVGDVTLDPGAGVAARGGHRLDLTATELR 173

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +L +L+  RG+ V+  QI + ++G   +A + N+V+ H+S LR+KL    G   + + R 
Sbjct: 174 VLTFLVEQRGRIVSAGQILNGVWGY--DAYDPNLVQVHVSGLRRKLEAH-GPRILHTVRG 230

Query: 216 LGYSI 220
           +GY +
Sbjct: 231 IGYRL 235


>gi|254486691|ref|ZP_05099896.1| two component transcriptional regulator, winged helix family
           [Roseobacter sp. GAI101]
 gi|214043560|gb|EEB84198.1| two component transcriptional regulator, winged helix family
           [Roseobacter sp. GAI101]
          Length = 218

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 12/153 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P+I ++    +   +D  + G DD V KP    E+ AR+  + RR   ++   +T  I
Sbjct: 72  RTPIIILTARDKVSDRIDGLNRGADDYVIKPFDLDEVTARIHTVCRR--SADLLTQTISI 129

Query: 132 R----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           R      SD       G    L  RE  +L+ L+  + + V K  + +AIYG + E VE 
Sbjct: 130 RDLTICLSD-HSVSRAGNPVRLTAREWGVLDVLLRRKTQIVPKETLETAIYG-YGEEVES 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N +E+HIS    +LR KLG D + + R +GYS+
Sbjct: 188 NALEAHIS----RLRTKLGKDLIATHRGIGYSL 216


>gi|187735330|ref|YP_001877442.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425382|gb|ACD04661.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 232

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R  +QVP++ ++ +      +D  D+G DD + KP   RE+LAR+  + RR +
Sbjct: 65  LEVLKQLREWTQVPILILTAWDREDEKVDALDAGADDYLTKPFSGRELLARLRVMLRRNR 124

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    GPI V    R  E   E   L  +E  IL  L+ ++GK +   Q+   I+
Sbjct: 125 PDREPSVFRLGPIVVDLSSRRVEKGKEEIHLTSKEYGILRLLLLHQGKVMTHRQLLREIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSI 220
           G   E  + + +  HI+ LR+KL +    DP    + ++  LGY I
Sbjct: 185 GPQHEE-DTHYLRVHIAHLRQKLGDS---DPENRIIRAESGLGYRI 226


>gi|65320879|ref|ZP_00393838.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 225

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G +D   ++  V++HI KLR KL +K
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209


>gi|302876997|ref|YP_003845630.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687688|ref|ZP_07630134.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579854|gb|ADL53866.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 9/142 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125
           IR    +P+I IS   +    ++    G DD V+KP    E++ARV A  RR K  SN++
Sbjct: 70  IRKVKVMPIIVISAKTAQGDKINVLKLGADDFVSKPFDIYEVVARVEAQLRRYKEFSNSK 129

Query: 126 AETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            E+       I +  D R+  V+ +   L  RE  ILE LM N  K   +  IF  ++  
Sbjct: 130 EESNRLIYKNITLDLDAREAFVKDKQLSLTFREFEILELLMKNPKKVFTRANIFQTVWN- 188

Query: 181 FDEAV-EENVVESHISKLRKKL 201
            DE + ++N +  H+S LR KL
Sbjct: 189 -DEFLGDDNTINVHMSNLRSKL 209


>gi|210622859|ref|ZP_03293382.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275]
 gi|210153964|gb|EEA84970.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275]
          Length = 233

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR +   P+I +S   S    +  F+ G DD + KP   RE+LA++ A  RR K
Sbjct: 63  FEVCQKIRDNVVCPIIFLSARQSETDKIRGFNLGGDDYITKPFGLRELLAKIEANLRREK 122

Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            S    E    R    G        R  EV G+  PL + E  I+E L  N G+   K Q
Sbjct: 123 RSQYLNEENKRRKLYFGNLSLDIKDRVVEVCGKDIPLTKTEYEIVELLALNAGQVFTKEQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I+  ++G +D+  +   V   I K+R+K 
Sbjct: 183 IYEKVWG-YDKGGDNTTVVEMIKKIRRKF 210


>gi|163736175|ref|ZP_02143594.1| two-component response regulator [Phaeobacter gallaeciensis BS107]
 gi|161390045|gb|EDQ14395.1| two-component response regulator [Phaeobacter gallaeciensis BS107]
          Length = 221

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 13/158 (8%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A    PLI ++   +++  ++  ++G DD ++KP    E+LAR+ A+ RR +     AET
Sbjct: 65  ARITTPLILLTALGAVEDRVEGLEAGADDYLSKPFAMTELLARITALGRRGRAEA--AET 122

Query: 129 GPIRVFSDGRDPE-------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
              R+   G D +         G    L  +E R+LE LM ++G+   +  +   ++ + 
Sbjct: 123 A-TRLSHRGLDLDLLSQTCACNGTTVLLNPKEFRLLEVLMRSKGRIQTRAMLLERVWDIN 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD +   +VVE+H+S+LR K+    G + + + R  GY
Sbjct: 182 FDPST--SVVETHMSRLRNKIEKPFGLEFIKTVRGSGY 217


>gi|94311936|ref|YP_585146.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|94312967|ref|YP_586176.1| winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|94313900|ref|YP_587109.1| winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|241765752|ref|ZP_04763697.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|93355788|gb|ABF09877.1| two component transcriptional regulator, winged helix family
           (Tn6048) [Cupriavidus metallidurans CH34]
 gi|93356819|gb|ABF10907.1| two component transcriptional regulator, winged helix family
           (Tn6048) [Cupriavidus metallidurans CH34]
 gi|93357752|gb|ABF11840.1| two component transcriptional regulator, winged helix family
           (Tn6048) [Cupriavidus metallidurans CH34]
 gi|241364378|gb|EER59508.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|254966516|gb|ACT97243.1| MmfR [Synthetic plasmid pMOL98]
 gi|325528823|gb|EGD05874.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. TJI49]
          Length = 221

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 18/172 (10%)

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  LE+   IRA    VPL+ I+    L   L   D G DD V+KP    E+LAR+ A+
Sbjct: 56  GKDGLEVLASIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAV 115

Query: 116 YRRLK------VSNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV 168
            RR        +SN      P    +   D P+VQ     L  RE  +L+ L+   G  +
Sbjct: 116 LRRKGGTAAPVLSNGVVTLDPATKEACANDGPQVQ-----LSNREFSLLQALLVRPGAIL 170

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++++   IYG + E VE N VE  I  LR+    KLG + + + R +G+ +
Sbjct: 171 SRSELEDRIYG-WGEEVESNAVEYLIHALRR----KLGGEVIKNVRGVGWMV 217


>gi|308175743|ref|YP_003922448.1| two component transcriptional regulator, winged helix family
           [Bacillus amyloliquefaciens DSM 7]
 gi|307608607|emb|CBI44978.1| two component transcriptional regulator, winged helix family
           [Bacillus amyloliquefaciens DSM 7]
 gi|328555717|gb|AEB26209.1| two component transcriptional regulator, winged helix family
           protein [Bacillus amyloliquefaciens TA208]
 gi|328914103|gb|AEB65699.1| two component transcriptional regulator, winged helix family
           [Bacillus amyloliquefaciens LL3]
          Length = 227

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 14/214 (6%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            LV +G+  +   DG+S    N       L  + +  ++ ++  +   G   LEL R+++
Sbjct: 25  GLVNEGFEVMSAADGMS--AMN-------LVKTFQPHIAVLDVMM--PGMDGLELSRMLK 73

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAE 127
             S   +I ++    ++  +     G DD + KP    E+LAR+ A I  +     +   
Sbjct: 74  KTSNTAVIMLTAKDEVELRVKALIEGADDYMIKPFSFEELLARIYARIRNQFPHLFDEVV 133

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GP R+    R+     +   L   E  +L++L+   G  ++KT+I   ++G +D   E+
Sbjct: 134 LGPFRIDDRSREIHYNEQPLKLSATEYELLKFLVLRHGTVLSKTRILDQVWG-YDFYGED 192

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           N+VE +I  LR+KL++K     + + R  GY +D
Sbjct: 193 NIVEVYIRSLREKLKDK-EHKVIRTVRGAGYRVD 225


>gi|83649242|ref|YP_437677.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83637285|gb|ABC33252.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 219

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 6/151 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           ++P++ +S    +Q  +   D+G DD + KP    E+ AR+ A+ RR    ++   +   
Sbjct: 72  EIPVLILSARDQVQDRVKGLDAGADDYLLKPFDVSELKARLRALSRRGSGNAHPEIQLAN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           IR+           E   L RRE  +L  L ++RG+ ++K Q+   +YG  D+ V  N +
Sbjct: 132 IRILPSSYQVYKSAEEVRLSRREYALLYELASHRGRVLSKDQLEELVYGWSDD-VSSNTM 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E HI  LRKKL      D + + R +GY I+
Sbjct: 191 EVHIHNLRKKLNP----DLIKTVRGMGYMIE 217


>gi|71908428|ref|YP_286015.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71848049|gb|AAZ47545.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 218

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 12/134 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
            D+G DD + KPI   E+ AR+ A+ RR   S  RA      G + +        + G+ 
Sbjct: 91  LDAGADDYLVKPIDLDELTARIRALTRR---SAGRAAPLLTHGELSIDLAAHRVTLAGQE 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  RE  +L+ L+ + G+ + +TQ+  ++YG  DE  + N +E HI  LRKKL ++L 
Sbjct: 148 IELSSREFSLLQMLLESAGRVLTRTQLEQSLYGWHDEP-DSNALEVHIHHLRKKLGSEL- 205

Query: 207 FDPVDSKRFLGYSI 220
              + + R +GY+I
Sbjct: 206 ---IRTLRGVGYTI 216


>gi|327192961|gb|EGE59877.1| two component transcriptional regulator, winged helix family
           [Rhizobium etli CNPAF512]
          Length = 223

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE +  +P + R     P+I ++     +  ++  D G DD + KP    E++AR+ A+ 
Sbjct: 57  GEGLRFIPELRRTGRDTPIIVLTARNEPKERVEGLDLGADDYLGKPFLVEELMARLRAVL 116

Query: 117 RR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR      LK++  R    P+ +     D  +      LPRRE  +L  L   + K V +
Sbjct: 117 RRPPNLAELKITAGRMVIDPLHLSVTVDDAPLD-----LPRRELLVLAALAKRKEKTVLR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + +A+Y  ++E ++ N +++HIS+LR++L        + + R +GY
Sbjct: 172 ATLEAAVYN-YEEEIQSNALDAHISRLRRRLAEAGAEVSIHNIRGVGY 218


>gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 230

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 9/148 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRQLRVRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVLRRRGE 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+
Sbjct: 122 DGGADGAAAPGALEAGPVRMDVDRHVVTVDGAKVDLPLKEFDLLEMLLRNAGRVLTRMQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G  D   +   ++ H+ +LR K+
Sbjct: 182 IDRVWG-ADYVGDTKTLDVHVKRLRAKI 208


>gi|238922516|ref|YP_002936029.1| hypothetical protein EUBREC_0090 [Eubacterium rectale ATCC 33656]
 gi|238874188|gb|ACR73895.1| hypothetical protein EUBREC_0090 [Eubacterium rectale ATCC 33656]
          Length = 220

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD    ++ + +HI  +R K  +   + PV +   +GY
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPVKTVWGIGY 216


>gi|119960910|ref|YP_948727.1| KDP operon transcriptional regulatory [Arthrobacter aurescens TC1]
 gi|119947769|gb|ABM06680.1| KDP operon transcriptional regulatory [Arthrobacter aurescens TC1]
          Length = 224

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 12/191 (6%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           LQ++A++ V  +   L       +E+ R IR  S +P+I +S   + +  ++  D+G DD
Sbjct: 38  LQATAKQPVEIVVLDLGLPDMDGVEIIRRIRGWSSMPIIVLSARHASEDKVEALDAGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERR 155
            V KP    E+LAR+    RR+   +            D  G+     G    L   E  
Sbjct: 98  YVTKPFGLDELLARLRVASRRVVTEHEEPTLATTDFMVDLAGKKIVKDGSEVRLTPTEWN 157

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           ILE L+ N+GK V++ QI + ++G    A E   +  +I++LR+KL      DP + +  
Sbjct: 158 ILELLVRNKGKLVSQQQILTQVWGQA-YAKETQYLRVYIAQLRRKLER----DPAEPRHL 212

Query: 216 -----LGYSID 221
                +GY  D
Sbjct: 213 HTEAGMGYRFD 223


>gi|297538213|ref|YP_003673982.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297257560|gb|ADI29405.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 230

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 16/171 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  RIIR  S +P+I ++        +   +SG DD V KP   RE+LAR+ A+ RR K
Sbjct: 62  IETLRIIRQASHIPVIMLTAKGDESERVMGLESGADDYVAKPCTPRELLARIRALLRRSK 121

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++ + ++       G + +    R  EV G+   L   E  +LE L  N G  V K  + 
Sbjct: 122 ITKDGSQQALQIVIGGLTITPAQRRVEVAGKAINLTSTEFNLLEILAKNAGHVVCKEDLA 181

Query: 175 SAIYG----LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
               G     FD +     V+ H+S +R+K+  +  G D + +   +GY +
Sbjct: 182 LQAMGRTLVRFDRS-----VDVHMSSIRQKIGTSSNGSDYIQTVYRMGYQL 227


>gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 235

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 12/150 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  S VP+I ++   S+   +  FD G DD + KP    E+LAR+ A+ RR+ 
Sbjct: 66  IEVCRRLRPTSDVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRID 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG---------EVFPLPRRERRILEYLMANRGKRVAKT 171
           +   +      +V    RD  V+          E+  L +RE  +L  LM N    + +T
Sbjct: 126 IEEEQQHRKQTKVTF--RDLSVEKENRIVRRGEEIIDLTKREYELLVMLMENVNVVLPRT 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ + ++G +   VE NVV+ +I  LR K+
Sbjct: 184 ELLNKVWG-YTTEVETNVVDVYIRYLRNKI 212


>gi|293380991|ref|ZP_06627022.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|290922454|gb|EFD99425.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
          Length = 239

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 23/229 (10%)

Query: 12  KDGYIALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP-- 64
           KDG I L  D+  S+  F    LEFE++    A +   A++ F   K   +L    LP  
Sbjct: 4   KDGKILLVEDEE-SVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPVY 62

Query: 65  ------RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
                 R IR  S VP+I ++   S        D G+DD + KP    E+LAR+  + RR
Sbjct: 63  DGMTVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           L+       V +   E GP+++     +     E   L  +E  ++  LM +  K  ++ 
Sbjct: 123 LEKMRQQNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKSRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   ++G +D   + N V+ +I  +R K+ N      + + R LGY +
Sbjct: 183 ELLDTVWG-YDFVGQTNTVDVYIRTIRNKIGNPYK-KIIKTMRGLGYCL 229


>gi|283766070|gb|ADB28435.1| two-component regulator protein PhoP [Edwardsiella tarda]
          Length = 224

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 2/150 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR   +++      P 
Sbjct: 73  LPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNSGLASQIISMPPF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +     R+  V   +  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 133 QADLSRRELRVNETLIKLTAFEYTIIETLIRNSGKVVSKDALMLQLYP-DAELRESHTID 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + +LRKKL+N+   D + + R  GY  D
Sbjct: 192 VLMGRLRKKLQNEYPADVITTVRGQGYRFD 221


>gi|161503675|ref|YP_001570787.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865022|gb|ABX21645.1| hypothetical protein SARI_01759 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|219523852|gb|ACL14889.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Arizona]
          Length = 224

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ I+  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIIDLGL--PDEDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 63  LIRRWRSSDVLLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  E+  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVINIPPFQVDLSRRELSVNEEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 219


>gi|163815874|ref|ZP_02207244.1| hypothetical protein COPEUT_02053 [Coprococcus eutactus ATCC 27759]
 gi|158448684|gb|EDP25679.1| hypothetical protein COPEUT_02053 [Coprococcus eutactus ATCC 27759]
          Length = 226

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G    E+ + IRA S VP+I ++     +  L  +D G DD V KP    E+ A++ +  
Sbjct: 62  GADGFEICKAIRAKSYVPVIFLTARGREEDRLYGYDIGCDDYVVKPFSMAELSAKIMSFL 121

Query: 117 RRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR K      +  E   I ++ D     V G    L  +E  +L+Y M +RG  + +  +
Sbjct: 122 RRSKGLWEKKSSIEAYDIVIYPDKLQVFVAGNEVRLAPKEYAMLKYFMEHRGMLITRDDL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G +D    + VV++HI KLR+ L
Sbjct: 182 LVRLWG-YDYEGSDRVVDNHIKKLRQAL 208


>gi|118463210|ref|YP_882465.1| two component system response regulator [Mycobacterium avium 104]
 gi|118164497|gb|ABK65394.1| two component system response regulator [Mycobacterium avium 104]
          Length = 239

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 5/185 (2%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           E L    R D+  ++  L G+      L  +IR    + ++ I+    L   L   D G 
Sbjct: 55  EELLDGIRPDLVVLDVMLPGR--DGFALIDVIRDWGDIGIVLITARDGLPDRLRGLDGGA 112

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           DD V KP    E+++RV A+ RR        + G + +          G    L   E R
Sbjct: 113 DDYVIKPFELAELVSRVGAVLRRRGRLPQVIQVGDVTLDPGAGVAARGGHRLDLTATELR 172

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +L +L+  RG+ V+  QI + ++G   +A + N+V+ H+S LR+KL    G   + + R 
Sbjct: 173 VLTFLVEQRGRIVSAGQILNGVWGY--DAYDPNLVQVHVSGLRRKLEAH-GPRILHTVRG 229

Query: 216 LGYSI 220
           +GY +
Sbjct: 230 IGYRL 234


>gi|89902709|ref|YP_525180.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347446|gb|ABD71649.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 224

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +RA  S +P++ ++    ++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 61  LEVLKKLRARGSALPVLILTAADGVEERVKGLDLGADDYMAKPFSLHELEARVRALSRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +++  + GP+     GR   + G +  L  RE  +LE ++   G+ V+K Q+   + 
Sbjct: 121 MGSASSTIKHGPLIYDQSGRVATIDGVMVELSARELGLLEVMLQRVGRLVSKDQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 E-WGEEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220


>gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 63  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 123 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204


>gi|148544452|ref|YP_001271822.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184153816|ref|YP_001842157.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227363120|ref|ZP_03847255.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325682774|ref|ZP_08162290.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|148531486|gb|ABQ83485.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183225160|dbj|BAG25677.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227071838|gb|EEI10126.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977124|gb|EGC14075.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 228

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 11/204 (5%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+++   L+    L+++  +D   I   L+      +E+ R +R     P+I ++   S
Sbjct: 24  EGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIEVARRVREIKDTPIIIMTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIR-----VFSD 136
           +   +   D G DD + KP    E+LARV A+ RR+ +   NN+     +      +  +
Sbjct: 84  VIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISIEDGNNKEHQTTVNYKDLTIEKE 143

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R      EV  L +RE  +L  LM N    +++  + S ++G +D  VE NVV+ +I  
Sbjct: 144 NRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLLSKVWG-YDSKVETNVVDVYIRY 202

Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220
           LR K+        + + R  GY I
Sbjct: 203 LRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241]
 gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241]
          Length = 223

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 63  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 123 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204


>gi|300766939|ref|ZP_07076852.1| DNA-binding response regulator [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495477|gb|EFK30632.1| DNA-binding response regulator [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 234

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 28/227 (12%)

Query: 16  IALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV------------- 60
           I +  D+G SL G+    L+FE++    A + ++A+E +   + E +             
Sbjct: 5   ILIVEDEG-SLSGYLTKELQFEDFNVLVAADGLAAMETYQAHQNELLLILLDWMLPKLDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR H QVP+I ++    +   +   D+G DD + KP    E+LAR+  I RR++
Sbjct: 64  MEVLRRIRKHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRVIQRRIE 123

Query: 121 VSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              N+ E   +    D        R    Q EV  L  RE  +L++ +A+  +   +  +
Sbjct: 124 ---NQVEPNQVYQLDDVQLDTKAHRVTNGQEEV-TLTHREYDLLQFFLAHPDEVFTRDDL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G  D   ++NVV+ ++  LR K+        + + R +GY +
Sbjct: 180 LDQVWGA-DFLGQQNVVDVYVGYLRNKITTTGASPLIQTVRGVGYKL 225


>gi|327469596|gb|EGF15065.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
          Length = 218

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  SQ+P++ ++      T L  F+  + D V KP     ++ R+  I RR  
Sbjct: 61  LEVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++  A  G + V  D      QGE  PL ++E  IL+ L   +G  V + Q+ + I+G 
Sbjct: 121 LASEIA-VGDLTVSIDDCTVYWQGEKMPLTKKEYEILQTLAKRKGHLVTRDQLMNTIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  ++  V+++HI  +RKK+       P+ +   +GY +
Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGV----PLKTITGMGYQL 213


>gi|316936295|ref|YP_004111277.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315604009|gb|ADU46544.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 221

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 18/215 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L + GY+A    DG           E W +    ED +AI   L   G   L + +  
Sbjct: 18  RGLGEAGYLAEIVGDG----------EEAWFRGDT-EDYAAIILDLGLPGLDGLTILKRW 66

Query: 68  RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           R + ++ P++ ++   S    +D  D+G DD + KP    E+LAR+ +I RR    +++ 
Sbjct: 67  RDNGRLTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSAGHASSV 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G + +        V+G+   L   E R+  YL+ +RG+ V++ ++   IYG  D+A 
Sbjct: 127 VSIGDVTLDERQMQVSVRGKPVALSPLEYRLASYLVLHRGRVVSQFELAENIYGQ-DDAH 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + ++R+    K+G D ++++R  GY +
Sbjct: 186 DSNAIEVLVGRVRR----KIGVDLIETRRGFGYIV 216


>gi|269137806|ref|YP_003294506.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Edwardsiella tarda EIB202]
 gi|267983466|gb|ACY83295.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Edwardsiella tarda EIB202]
 gi|304557861|gb|ADM40525.1| Two-component system response regulator QseB [Edwardsiella tarda
           FL6-60]
 gi|308084102|gb|ADO13167.1| QseB [Edwardsiella tarda]
 gi|308084104|gb|ADO13168.1| QseB [Edwardsiella tarda]
          Length = 219

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +LI+D  L+ DG  A     G +L+ F   +       SA  D   ++  L G  G ++L
Sbjct: 4   LLIEDDRLIGDGIKAGLSKMGFTLDWFTDGQLGMTALESAPYDAVILDLSLPGIDGLEIL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R   A    P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR   
Sbjct: 64  R--RWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRR--- 118

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ +A+T    G + +        + G   PL  +E  +LE L+ N G+ + ++ I   +
Sbjct: 119 NHGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           Y  +D+ V  N VE HI  LR+KL
Sbjct: 179 YS-WDDDVSSNAVEVHIHHLRRKL 201


>gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 4/159 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           L R+    S +P++ ++    ++  +   D+G DD + KP    E+LARV A+ RR    
Sbjct: 65  LRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKTGD 124

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             SN+R     + + +D R+    G+   L  +E  +L   M N  + +++  I   I+G
Sbjct: 125 DTSNHRLTFEDLVMDTDAREVIRGGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +D + E NV+E +I+ LR+K     G   + + R  GY
Sbjct: 185 -YDYSGESNVLEVYIAMLRQKTEEHGGKRLIQTIRGAGY 222


>gi|171915578|ref|ZP_02931048.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 247

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 23/184 (12%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    VP+I ++   S    +   + G DD + KP   RE+ ARV A+ RR + 
Sbjct: 65  EVCRQVRTSKNVPVIFLTARSSEVDRVVGLEIGGDDYLCKPFSPRELTARVRAVLRRTQP 124

Query: 122 SNNRAETGPIR-----------------VFSDGRDPEVQ--GEVFPLPRRERRILEYLMA 162
               A TGPI+                 V  D    +++  GEV PL R E R+L+ L  
Sbjct: 125 QAAPAATGPIQAQVTPQPQAGPLGATTPVVVDETRCQIRYFGEVLPLSRYEYRLLQTLAR 184

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + G+  +++Q+        D A+E   V++H+  LR K++  +   + + + R +GYS+ 
Sbjct: 185 HPGRVFSRSQLMEHASDEPDAAMERT-VDAHVKSLRAKMKLIREEVEAIVTHRGMGYSLT 243

Query: 222 --WN 223
             W+
Sbjct: 244 EAWS 247


>gi|149276901|ref|ZP_01883044.1| two-component response regulator [Pedobacter sp. BAL39]
 gi|149232570|gb|EDM37946.1| two-component response regulator [Pedobacter sp. BAL39]
          Length = 225

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 4/149 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G K+L+  ++   + +  +I IS   +L+  +   + G DD + KP H  E+ AR+ +
Sbjct: 57  GNGMKILD--QLKAQNKEDGVIIISAKNALEDKIRGLELGADDYLAKPFHLSELSARIFS 114

Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR   +N N  + G ++V    +  EV G V  L ++E  +L + M N+ K ++K+ +
Sbjct: 115 VIRRKNFANSNFIQQGELKVDLLAKTVEVAGSVVTLTKKEFDLLLFFMGNKNKVISKSAL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKL 201
              + G L D     + + +HI  L+KKL
Sbjct: 175 AEHLSGDLADMLDNHDFIYAHIKNLKKKL 203


>gi|121596283|ref|YP_988179.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120608363|gb|ABM44103.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 224

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+    S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR +  
Sbjct: 64  LKRLRGRGSALPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALTRRGMGG 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +++    GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   +   +
Sbjct: 124 TSSAIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLCE-W 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 183 GEEVSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220


>gi|238791834|ref|ZP_04635471.1| Two-component response regulator of virulence determinant [Yersinia
           intermedia ATCC 29909]
 gi|238728938|gb|EEQ20455.1| Two-component response regulator of virulence determinant [Yersinia
           intermedia ATCC 29909]
          Length = 223

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 104/202 (51%), Gaps = 7/202 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D AL++        + G  ++   ++ E + +LQ  A  D++ I+  L   GE  L
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHA-PDIAIIDLSL--PGEDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR +
Sbjct: 61  SLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNI 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
              E  E + ++  + +LRKKL
Sbjct: 181 -DAELRESHTIDVLMGRLRKKL 201


>gi|330445874|ref|ZP_08309526.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490065|dbj|GAA04023.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 223

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 18/208 (8%)

Query: 28  GFNSLEF--------EEWLQSSAREDVSAIEAFLIGKG-EKVLELPRIIRAHSQVPLIGI 78
           GFN+L F        +E L  +   D   I   L+  G + +  L ++ +   +  +I +
Sbjct: 19  GFNNLGFTTDEAENGDEGLSLALNNDYDIIILDLMLPGVDGMTILNKLRQTGIETRIIIL 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138
           S     Q  +D    G DD V KP    E+ ARV AI RR +  N    T  I +     
Sbjct: 79  SAKTHSQDRIDGLLQGADDYVTKPFSFDELHARVLAISRRCQAIN---VTNTIEIDGFIL 135

Query: 139 DPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
           DP  +   +      L   E +I++YL  +RG+ +  + I   I   FD  + +N +E H
Sbjct: 136 DPSKKTLFYGSHDLELTPNEFKIVDYLFTHRGQILTTSMISDNIANNFD-YIAKNTIEVH 194

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IS +RKK +      P+ +KR  GY I+
Sbjct: 195 ISTMRKKAKKIDAVLPIKNKRGFGYYIE 222


>gi|307944018|ref|ZP_07659360.1| sensory transduction protein regX3 [Roseibium sp. TrichSKD4]
 gi|307772859|gb|EFO32078.1| sensory transduction protein regX3 [Roseibium sp. TrichSKD4]
          Length = 256

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 6/152 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ET 128
            P++ ++   S    L  F +G DD V KP   RE++ R+ AI RR +++N       E 
Sbjct: 96  TPILFLTALGSETNVLQGFAAGADDYVVKPFSPRELIVRIKAILRRSQMANEAEAQLLEV 155

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           GPI++  +     + G    L   E +IL  L+    + +++ Q+ S +YG  D AV   
Sbjct: 156 GPIQLDLEHPSCNLSGRTISLTPCEYKILRGLLERPRRVLSRGQLISLLYG-NDVAVGPK 214

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ H+  LR K+ +  G   +++ R  GY I
Sbjct: 215 AIDVHVHNLRAKIGDDAGV-IIETVRGFGYRI 245


>gi|269119156|ref|YP_003307333.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268613034|gb|ACZ07402.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 230

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 19/175 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL+L R   +   VP+I ++     +  +   D G DD + KP    E+LAR+ A+ 
Sbjct: 59  GLSVLKLLR--ESKIPVPVILLTAKSQTEDKVQGLDFGADDYLEKPFQMEELLARLRALT 116

Query: 117 RR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR         +K  +      P  +    RD ++      L  +E + LE L+ N+   
Sbjct: 117 RRKGELIFDGIMKFGD--ISLNPHLLLLSCRDNKIN-----LTLKESQALELLITNKNTA 169

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           V+K  I   ++G +D   E+N  E HIS LRKKL+       + + R +GY I +
Sbjct: 170 VSKETIIEKLWG-YDSEAEDNHAEIHISLLRKKLKQAGSVLLIKAIRGIGYIIKY 223


>gi|229031256|ref|ZP_04187262.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228730014|gb|EEL80988.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 225

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G +D   ++  V++HI    KKLRNKLG
Sbjct: 184 WG-YDYYGDDRTVDTHI----KKLRNKLG 207


>gi|222112512|ref|YP_002554776.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221731956|gb|ACM34776.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 224

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+    S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR +  
Sbjct: 64  LKRLRGRGSALPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALTRRGMGG 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +++    GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   +   +
Sbjct: 124 TSSAIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLCE-W 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 183 GEEVSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220


>gi|168186993|ref|ZP_02621628.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169295082|gb|EDS77215.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 235

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 39/210 (18%)

Query: 46  VSAIEAFLIGKGEKV------LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFF 91
           V+ +EAF I    KV      + +P+I        IR    +P+I +S        +   
Sbjct: 32  VNGLEAFEIISNNKVDIAIIDIMMPKIDGYHLIKKIREKYDIPIIMLSAKSEYSDKILGL 91

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRR-----------LKVSNNRAETGPIRVFSDGRDP 140
           D G DD V KP +  E++ARV A  RR           LK   +  E G +R+  +    
Sbjct: 92  DLGADDYVTKPFNAMEVVARVNAQLRRYNKLKKNTYVNLKEKKSYLECGNLRLNINTCTL 151

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-----YGLFDEAVEENVVESHIS 195
                   L   E +I+ YL+ N+G+   K QIF  +     YG      ++N +  HIS
Sbjct: 152 YKDNVEVYLTSTEYKIISYLLENKGRVFTKKQIFEYVWEEPFYG------DDNAIMVHIS 205

Query: 196 KLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
            LR K+ +    +P  + + R LGY +D N
Sbjct: 206 NLRDKVEDD-SKNPKYIKTIRGLGYKLDAN 234


>gi|160895572|ref|YP_001561154.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361156|gb|ABX32769.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 241

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 24/238 (10%)

Query: 1   MFVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK 56
           + ++++D   +     A    DG    ++ +G  +L+    L    R D+  ++  L G 
Sbjct: 13  LVLVVEDEPAIASILTAYLERDGLRSRMASDGQEALQLFRLL----RPDLVLLDIHLPGM 68

Query: 57  -GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G  VL   R IR  SQ P+I ++        L     G DD V KP +  E++ARV A+
Sbjct: 69  DGIDVL---RAIRDDSQTPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAV 125

Query: 116 YRRLKVSNNRAET----GPIRVFSDGRDPEV---QGEVFPLP--RRERRILEYLMANRGK 166
            RR +   N A      GPI + ++     V   +G   PLP    E R+L  L A   +
Sbjct: 126 LRRTQARKNPAPAPIRVGPIEIDAEAHSAVVYDNEGRALPLPLTLTEFRLLACLAAQPRR 185

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
             +++ +    + L +    E V++SH+SKLR+KL+       +++ R +GY +  W+
Sbjct: 186 CFSRSHLIE--HCLPESDALERVIDSHLSKLRRKLQLAGQEGLIETVRGIGYRLWPWD 241


>gi|222107067|ref|YP_002547858.1| two component response regulator [Agrobacterium vitis S4]
 gi|221738246|gb|ACM39142.1| two component response regulator [Agrobacterium vitis S4]
          Length = 229

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 23/190 (12%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFL------IGKGEKVLELPRIIRAHSQVPLIGISD 80
           EGF+ L  ++  +  A  D  A +  +      I  G  VL+    IR  S++P++ ++ 
Sbjct: 24  EGFDVLSTDDGAKGLAFVDSGATDIIVLDVMMPIMNGVDVLQ---NIRKSSEIPIVMLTA 80

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFS 135
               +  +   D G DD V+KP    E++AR+ AI RR   +     + P++     ++ 
Sbjct: 81  RGDDKDRITGLDLGADDYVSKPCSPGELVARLRAILRRTGKTPPEHPSQPLKSGELVLYP 140

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL----FDEAVEENVVE 191
             R   + GE   L   E  +LE L+ N GK V+K  I  +++G     FD       ++
Sbjct: 141 TSRQAHINGEALALTGTEYNLLELLVRNGGKVVSKHDISQSVFGRPLTPFDRR-----ID 195

Query: 192 SHISKLRKKL 201
            H+S +R+KL
Sbjct: 196 VHLSSIRQKL 205


>gi|218779424|ref|YP_002430742.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760808|gb|ACL03274.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 236

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 93/216 (43%), Gaps = 32/216 (14%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPL 75
           EGF ++  ++ LQ        A+E F     + V+           E+ + IRAHS VP+
Sbjct: 27  EGFQTIPAKDGLQ--------AVEMFAEATPDLVILDILMPEMDGTEVCKKIRAHSDVPI 78

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--------- 126
           I +S        +   + G DD V KP   RE++ARV A  RR       A         
Sbjct: 79  IFLSSKDDEIDRILGLELGGDDYVTKPFSPRELIARVKARLRRRLTEAKPAVSLQEKLGA 138

Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E G +R+  D R          L  RE RIL+ LM    K   + ++    YG  D  
Sbjct: 139 ILEKGRLRLDVDARIVSWDSVRVELTHREFRILQTLMGYPEKIFTREELIDGAYGR-DHF 197

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V +  ++SHI  +RKKL   +G + + +   +GY +
Sbjct: 198 VSDRTIDSHIKSVRKKL-AAVGGEAIRTAHGVGYQL 232


>gi|15833161|ref|NP_311934.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. Sakai]
 gi|168747469|ref|ZP_02772491.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4113]
 gi|168753991|ref|ZP_02778998.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4401]
 gi|168760182|ref|ZP_02785189.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4501]
 gi|168767044|ref|ZP_02792051.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4486]
 gi|168773322|ref|ZP_02798329.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4196]
 gi|168781897|ref|ZP_02806904.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4076]
 gi|168785895|ref|ZP_02810902.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC869]
 gi|168797613|ref|ZP_02822620.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC508]
 gi|191167555|ref|ZP_03029367.1| transcriptional regulatory protein QseB [Escherichia coli B7A]
 gi|193062151|ref|ZP_03043247.1| transcriptional regulatory protein QseB [Escherichia coli E22]
 gi|193067451|ref|ZP_03048419.1| transcriptional regulatory protein QseB [Escherichia coli E110019]
 gi|194426360|ref|ZP_03058915.1| transcriptional regulatory protein QseB [Escherichia coli B171]
 gi|195937167|ref|ZP_03082549.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807848|ref|ZP_03250185.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4206]
 gi|208813501|ref|ZP_03254830.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4045]
 gi|208820089|ref|ZP_03260409.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4042]
 gi|209398732|ref|YP_002272499.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4115]
 gi|209920497|ref|YP_002294581.1| DNA-binding transcriptional regulator QseB [Escherichia coli SE11]
 gi|217327973|ref|ZP_03444056.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. TW14588]
 gi|218555595|ref|YP_002388508.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI1]
 gi|218696731|ref|YP_002404398.1| DNA-binding transcriptional regulator QseB [Escherichia coli 55989]
 gi|254794977|ref|YP_003079814.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. TW14359]
 gi|256019057|ref|ZP_05432922.1| DNA-binding transcriptional regulator QseB [Shigella sp. D9]
 gi|260845779|ref|YP_003223557.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O103:H2 str. 12009]
 gi|260857158|ref|YP_003231049.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O26:H11 str. 11368]
 gi|260869779|ref|YP_003236181.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O111:H- str. 11128]
 gi|261228037|ref|ZP_05942318.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254893|ref|ZP_05947426.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O157:H7 str. FRIK966]
 gi|291284403|ref|YP_003501221.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O55:H7 str. CB9615]
 gi|300818789|ref|ZP_07098995.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821609|ref|ZP_07101755.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300923683|ref|ZP_07139710.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|307310347|ref|ZP_07589995.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309793589|ref|ZP_07688015.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331654630|ref|ZP_08355630.1| transcriptional regulatory protein QseB [Escherichia coli M718]
 gi|331669956|ref|ZP_08370801.1| transcriptional regulatory protein QseB [Escherichia coli TA271]
 gi|331679095|ref|ZP_08379767.1| transcriptional regulatory protein QseB [Escherichia coli H591]
 gi|332280158|ref|ZP_08392571.1| transcriptional regulatory protein qseB [Shigella sp. D9]
 gi|21759373|sp|Q8XBS3|QSEB_ECO57 RecName: Full=Transcriptional regulatory protein qseB
 gi|13363379|dbj|BAB37330.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|187771006|gb|EDU34850.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4196]
 gi|188017926|gb|EDU56048.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4113]
 gi|189000655|gb|EDU69641.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4076]
 gi|189358454|gb|EDU76873.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4401]
 gi|189363668|gb|EDU82087.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4486]
 gi|189369277|gb|EDU87693.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4501]
 gi|189374171|gb|EDU92587.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC869]
 gi|189379675|gb|EDU98091.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC508]
 gi|190902412|gb|EDV62149.1| transcriptional regulatory protein QseB [Escherichia coli B7A]
 gi|192932371|gb|EDV84969.1| transcriptional regulatory protein QseB [Escherichia coli E22]
 gi|192959408|gb|EDV89843.1| transcriptional regulatory protein QseB [Escherichia coli E110019]
 gi|194415668|gb|EDX31935.1| transcriptional regulatory protein QseB [Escherichia coli B171]
 gi|208727649|gb|EDZ77250.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4206]
 gi|208734778|gb|EDZ83465.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4045]
 gi|208740212|gb|EDZ87894.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4042]
 gi|209160132|gb|ACI37565.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4115]
 gi|209759568|gb|ACI78096.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759570|gb|ACI78097.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759572|gb|ACI78098.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759574|gb|ACI78099.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759576|gb|ACI78100.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209913756|dbj|BAG78830.1| two-component response regulator [Escherichia coli SE11]
 gi|217320340|gb|EEC28765.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. TW14588]
 gi|218353463|emb|CAU99558.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli 55989]
 gi|218362363|emb|CAQ99987.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli IAI1]
 gi|254594377|gb|ACT73738.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O157:H7 str. TW14359]
 gi|257755807|dbj|BAI27309.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O26:H11 str. 11368]
 gi|257760926|dbj|BAI32423.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O103:H2 str. 12009]
 gi|257766135|dbj|BAI37630.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O111:H- str. 11128]
 gi|290764276|gb|ADD58237.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O55:H7 str. CB9615]
 gi|300420050|gb|EFK03361.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300525747|gb|EFK46816.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300528574|gb|EFK49636.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|306909242|gb|EFN39737.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|308122546|gb|EFO59808.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|315062336|gb|ADT76663.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli W]
 gi|320189376|gb|EFW64035.1| Two-component system response regulator QseB [Escherichia coli
           O157:H7 str. EC1212]
 gi|320201937|gb|EFW76512.1| Two-component system response regulator QseB [Escherichia coli
           EC4100B]
 gi|320640099|gb|EFX09671.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. G5101]
 gi|320645396|gb|EFX14405.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H- str. 493-89]
 gi|320650708|gb|EFX19165.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H- str. H 2687]
 gi|320656403|gb|EFX24310.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661775|gb|EFX29183.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666927|gb|EFX33903.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154721|gb|EFZ40920.1| transcriptional regulatory protein qseB [Escherichia coli EPECa14]
 gi|323163077|gb|EFZ48910.1| transcriptional regulatory protein qseB [Escherichia coli E128010]
 gi|323173733|gb|EFZ59362.1| transcriptional regulatory protein qseB [Escherichia coli LT-68]
 gi|323178730|gb|EFZ64306.1| transcriptional regulatory protein qseB [Escherichia coli 1180]
 gi|323377078|gb|ADX49346.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323946732|gb|EGB42752.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|324018133|gb|EGB87352.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324119636|gb|EGC13517.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|326337729|gb|EGD61563.1| Two-component system response regulator QseB [Escherichia coli
           O157:H7 str. 1125]
 gi|326347293|gb|EGD71018.1| Two-component system response regulator QseB [Escherichia coli
           O157:H7 str. 1044]
 gi|331048012|gb|EGI20089.1| transcriptional regulatory protein QseB [Escherichia coli M718]
 gi|331062869|gb|EGI34783.1| transcriptional regulatory protein QseB [Escherichia coli TA271]
 gi|331073160|gb|EGI44483.1| transcriptional regulatory protein QseB [Escherichia coli H591]
 gi|332102510|gb|EGJ05856.1| transcriptional regulatory protein qseB [Shigella sp. D9]
          Length = 219

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|299534866|ref|ZP_07048195.1| response regulator [Lysinibacillus fusiformis ZC1]
 gi|298729711|gb|EFI70257.1| response regulator [Lysinibacillus fusiformis ZC1]
          Length = 221

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP    E+LAR+ AI RR   S ++  +   ++++ D R      +   L
Sbjct: 91  LDAGADDYVVKPFKMEELLARIRAILRRKNKSIHQIIQIDDLKLYLDSRTLYKDNQEILL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            + E  +LEYL  N+G  + + QI++ ++G FD  +  N +++ +  +RKK+        
Sbjct: 151 TKNEFLLLEYLFINKGIVLTREQIYTQVWG-FDHEMTNNNLDALVKLVRKKIDYNRSKSI 209

Query: 210 VDSKRFLGYSI 220
           +++ R +GY +
Sbjct: 210 IENIRGIGYRV 220


>gi|160898196|ref|YP_001563778.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363780|gb|ABX35393.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 221

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R  R    V ++  SD   LQ  L   + G DD + KP    E++AR+ AI 
Sbjct: 59  GIEVLRAWRAQRKALAVLILTASD--GLQNRLLGLNEGADDYLAKPFEPEELVARMRAIV 116

Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    ++N    G +   +D R+  +QGE   L  RE  +LE L++  G  V K++I S
Sbjct: 117 RRSHGGASNLLTVGALSFNTDTRELFLQGERLALSPREAALLELLISAPGAAVPKSRIIS 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +   ++     N VE +I KLR+KL
Sbjct: 177 TMSS-WEANFSANAVEIYILKLRRKL 201


>gi|325521888|gb|EGD00601.1| DNA-binding response regulator [Burkholderia sp. TJI49]
          Length = 220

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ + +   P+I ++   ++   +   D+G DD + KP    E+LAR+  + RR   S
Sbjct: 63  LARLRQRNDPTPVIIVTARDTIGDRVAGLDAGADDYLVKPFALEELLARIRVVSRRQTGS 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                ++G +R+        +  E  P+  RE  ILE L+      V + Q+   +YG +
Sbjct: 123 VQTVFQSGTLRLDPAQHRVWLGTEEVPVTAREFAILEELIRRPNGIVTREQLEECLYG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E VE N V+ HI  LR+    KLG D + + R +GY I
Sbjct: 182 NEEVESNTVQVHIHHLRQ----KLGTDVIVTVRGIGYRI 216


>gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
 gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
          Length = 238

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 14/140 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----------TGPIRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR +     AE           G +++F    +   +
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTQFVPEAAEEKTEDGDSLRIGGLKIFPQHYEAYFE 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            E+  L  +E  +L YL  N+ + + + Q+ SA++  +D A +  +V+ HIS LR+K+  
Sbjct: 156 DELLELTPKEFELLLYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLREKIET 214

Query: 204 KLGFDPVDSK--RFLGYSID 221
                PV  K  R LGY ++
Sbjct: 215 NTK-KPVYIKTIRGLGYKLE 233


>gi|311897834|dbj|BAJ30242.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 255

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 7/139 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125
           IRA S  P+I +++  S    +    +G DD + KP    E+LAR+ A+ RR + V  +R
Sbjct: 101 IRAVSDTPIIAVTERGSELDRVLGLQAGADDYMVKPYGFHELLARIGAVMRRFRPVRTSR 160

Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + GP+R+ +  R   + GE   L R+E  +L  L A  G  V++ Q+ + ++   D+A
Sbjct: 161 TIDHGPLRIDASTRRVTLHGEWVELTRKEFDLLHALAAQPGAVVSRRQLMTQVW---DDA 217

Query: 185 VEEN--VVESHISKLRKKL 201
                  +++H+S LR KL
Sbjct: 218 WSPKGRTLDTHVSSLRGKL 236


>gi|303232881|ref|ZP_07319565.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481071|gb|EFL44147.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
          Length = 236

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 13/171 (7%)

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R+++Q   +P+I ++   +    +   D+G DD + KP    E+L+R+ A+ RR 
Sbjct: 63  ITRTLRSNAQWSHIPIIMLTAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRRA 122

Query: 120 KVSNNRA--ETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +        +    RV +   DP      V  E   L  +E  +L YLM + G    +  
Sbjct: 123 QTPAQMPADKYSMCRVGAIMLDPARHFVCVHDEPVNLTHKEYDLLHYLMLHEGLVFTRDM 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  A++G FD   E   V+ HI  LR+KL +   +  V + R +GY +  N
Sbjct: 183 LMQAVWG-FDYEGESRTVDMHIKTLRQKLGDAACY--VQTVRGVGYCVKSN 230


>gi|229154965|ref|ZP_04283079.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228628523|gb|EEK85236.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 209

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 49  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 108

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 109 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 168

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 169 G-YDYAGSTRTVDTHVKTMRLKL 190


>gi|259503600|ref|ZP_05746502.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|259168424|gb|EEW52919.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
          Length = 228

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 11/204 (5%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+++   L+    L+++  +D   I   L+      +E+ R +R     P+I ++   S
Sbjct: 24  EGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIEVARRVRELKDTPIIIMTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ 143
           +   +   D G DD + KP    E+LARV A+ RR+ + +  ++     V       E +
Sbjct: 84  VIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISIEDGNSKEHQTTVNYKDLTIEKE 143

Query: 144 G-------EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
                   EV  L +RE  +L  LM N    +++ ++ S ++G +D  VE NVV+ +I  
Sbjct: 144 NRIVRRGDEVINLTKREYELLLILMENINVVMSRKELLSKVWG-YDSKVETNVVDVYIRY 202

Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220
           LR K+        + + R  GY I
Sbjct: 203 LRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|30023144|ref|NP_834775.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296505525|ref|YP_003667225.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29898704|gb|AAP11976.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296326577|gb|ADH09505.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQKEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-YNIVVNPNVVDLYIGYVRKKLKCEKKERYIQTIHGRGYSM 223


>gi|315655447|ref|ZP_07908347.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus curtisii
           ATCC 51333]
 gi|315490387|gb|EFU80012.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus curtisii
           ATCC 51333]
          Length = 224

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R +R     P++ ++   +    +     G DD + KP    E+++RV A  RR K
Sbjct: 60  FELCRNVREKVDCPILFLTAKTTETDVIQGLAMGADDYIRKPFTPSELVSRVNAHIRREK 119

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   T G IR     R+  V+ E+  L + E  I E ++ +RG+  ++ Q+     G
Sbjct: 120 RLHHAVLTDGEIRFLLAAREVRVRDEIVTLTKMEYEICELMIRHRGQVFSRKQLLDQAGG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E+    VVE HI  +RKK       DP+ +   +GY  D
Sbjct: 180 YWTESEPAAVVE-HIKNIRKKF-APYQVDPIKTIWGIGYKWD 219


>gi|314934421|ref|ZP_07841780.1| DNA-binding response regulator [Staphylococcus caprae C87]
 gi|313652351|gb|EFS16114.1| DNA-binding response regulator [Staphylococcus caprae C87]
          Length = 225

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 2/191 (1%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91
           L  EE L    +E+V      ++  G    EL + ++    +P+I ++   +L      F
Sbjct: 33  LSGEEALHFLEKENVDIAIVGIMMNGINGFELCKTLKEDYDIPVIMLTARDALSDKERAF 92

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            SG DD V KP   +E+L R+ A+ R  ++ + +  + G + +     +  V  +   LP
Sbjct: 93  LSGTDDYVTKPFEVKELLFRIKAVLRSYQINAESELKLGNLTLNQPYMEISVDAKTINLP 152

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
            +E ++L  L++N      +  I   I+G FD   ++  V+ HI +LR+KL        +
Sbjct: 153 NKEFQLLFLLVSNPKHIFTRNDIIEKIWG-FDYEGDDRTVDVHIKRLRQKLSRLGASISI 211

Query: 211 DSKRFLGYSID 221
            + R  GY ++
Sbjct: 212 HTVRGQGYKVN 222


>gi|308084100|gb|ADO13166.1| QseB [Edwardsiella tarda]
          Length = 219

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +LI+D  L+ DG  A     G +L+ F   +       SA  D   ++  L G  G ++L
Sbjct: 4   LLIEDDRLIGDGIKAGLNKMGFTLDWFTDGQLGMTALESAPYDAVILDLSLPGIDGLEIL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R   A    P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR   
Sbjct: 64  R--RWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRR--- 118

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ +A+T    G + +        + G   PL  +E  +LE L+ N G+ + ++ I   +
Sbjct: 119 NHGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           Y  +D+ V  N VE HI  LR+KL
Sbjct: 179 YS-WDDDVSSNAVEVHIHHLRRKL 201


>gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8]
 gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8]
          Length = 220

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFP 148
            D+G DD + KP H  E+LARV A+ RR   S+  A+   GP+ + +      V G+   
Sbjct: 91  IDAGADDYLTKPFHMEELLARVRALLRR-SSSHASAQWRCGPLMLDTRLAKVTVDGQALS 149

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L   E ++L  LM   G+ ++++++   +Y   D   + N ++  I +LRKKL      D
Sbjct: 150 LTSHEFKVLAVLMQRAGEVISRSELTEHVYA-QDHDRDSNTIDVFIGRLRKKLPP----D 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY +
Sbjct: 205 TIETVRGLGYRL 216


>gi|218232438|ref|YP_002369894.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228961333|ref|ZP_04122949.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229130349|ref|ZP_04259307.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|218160395|gb|ACK60387.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228653048|gb|EEL08928.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228798341|gb|EEM45338.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 220

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 57  EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 115

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 116 CNQQKEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 176 VWG-YNIVVNPNVVDLYIGYVRKKLKCEKKERYIQTIHGRGYSM 218


>gi|170766034|ref|ZP_02900845.1| transcriptional regulatory protein QseB [Escherichia albertii
           TW07627]
 gi|170125180|gb|EDS94111.1| transcriptional regulatory protein QseB [Escherichia albertii
           TW07627]
          Length = 219

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 25/229 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G+S  GF+   F E  Q       +  +A ++      L
Sbjct: 3   ILLIEDDMLIGDGI-----KTGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILD-----L 52

Query: 62  ELPR-----IIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
            LPR     I+R       + P++ ++   +L   ++    G DD + KP    E+ AR+
Sbjct: 53  TLPRMDGRDILREWRNKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112

Query: 113 AAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A+ RR   +++N    G + +    R   + GE   L  +E  +LE LM N G+ + + 
Sbjct: 113 EALMRRTNGLASNELRHGNVMLDPGKRIATLAGESLTLKPKEFALLELLMRNVGRVLPRK 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I   +Y  +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 173 LIEEKLY-TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|164688486|ref|ZP_02212514.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM
           16795]
 gi|164602899|gb|EDQ96364.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM
           16795]
          Length = 224

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 3/151 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            H + P+I ++    L+     F  G DD + KPI   E++ R+ AI RR K+ N+   T
Sbjct: 70  GHCETPIIIVTAKEQLEDKKKGFSIGADDYMVKPIDFEELILRIGAILRRSKIVNDHKIT 129

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G   +  +       GE   LP++E  +L  L+++      + Q+   I+G+ +   +E
Sbjct: 130 IGNTVLDYNSLSVTSNGECNTLPKKEFYLLFKLVSSPDTIFTRRQLLDEIWGM-ESMADE 188

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             V+ HI ++R++ R    F+ V + R LGY
Sbjct: 189 RTVDVHIKRIRERYRASNDFEIV-TVRGLGY 218


>gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
          Length = 223

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 2/148 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
             P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR   S + +   G 
Sbjct: 72  NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + +  +     G+   L ++E +ILEYL+ N+ + V K ++   ++  FD+ V  +V+
Sbjct: 132 LILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS-FDDEVFSDVL 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            SHI  LRKK+        + + R +GY
Sbjct: 191 RSHIKNLRKKVDKGFKRKIIHTVRGIGY 218


>gi|215486384|ref|YP_002328815.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312966386|ref|ZP_07780608.1| transcriptional regulatory protein phoP [Escherichia coli 2362-75]
 gi|215264456|emb|CAS08819.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288839|gb|EFR16737.1| transcriptional regulatory protein phoP [Escherichia coli 2362-75]
          Length = 223

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 105/218 (48%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R++   +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQDVITTVRGQGY 218


>gi|158340654|ref|YP_001521822.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310895|gb|ABW32508.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 247

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKV 121
           R IR  S+VP+I ++    +   +   + G DD + KP   +E+ +RV  I RR   LK 
Sbjct: 76  RAIRKTSRVPIIMLTALSEVGDRVTGLEMGADDYMVKPFSPKELESRVRCIIRRMGSLKP 135

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N R       G +R+ ++ R      E   L   E  +LE L +  G  V++ ++   +
Sbjct: 136 FNYRVTGVLNIGSLRIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELLEKV 195

Query: 178 YGLFDEA-VEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +G  +   V+  VV+ H+S+LR KL+ N++G + + + R +GY++  
Sbjct: 196 WGYSNGTIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTLKC 242


>gi|148261933|ref|YP_001236060.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326405441|ref|YP_004285523.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
 gi|146403614|gb|ABQ32141.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325052303|dbj|BAJ82641.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
          Length = 236

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 11/158 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P+I ++     Q T+   ++G DD + KP     ++AR+ A+ RR   +  RA   P+
Sbjct: 80  HLPVIMLTARAEDQDTVRGLETGADDYITKPFSPEALIARIRALLRRSGTAPARA---PL 136

Query: 132 RVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            VF D   DP        G V  L   E R+LE+ M +  +  ++  + +A++G  D  V
Sbjct: 137 -VFHDLELDPTTHRVTRGGRVLHLGPTEFRLLEFFMRHPRRVFSREDVLNAVWG-RDIHV 194

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           E   V+ HI +LRK +  +   D V + R  GY++D +
Sbjct: 195 EPRTVDVHIRRLRKSINAETDIDLVRTVRAAGYALDLD 232


>gi|331266563|ref|YP_004326193.1| DNA-binding response regulator CiaR [Streptococcus oralis Uo5]
 gi|326683235|emb|CBZ00853.1| DNA-binding response regulator CiaR [Streptococcus oralis Uo5]
          Length = 224

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G + V     + +V+     L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGDVIVNLSTNEVKVEDTPVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  ++G FD     +VVE ++SK+RKKL+     + 
Sbjct: 151 LGKEFELLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTAFAEN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|325970798|ref|YP_004246989.1| transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324026036|gb|ADY12795.1| two component transcriptional regulator, winged helix family
           [Spirochaeta sp. Buddy]
          Length = 241

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 14/138 (10%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD--------GRDPEV 142
           F+ G DD V KP   +E++ RV A++RR+ VS +   +G      +             V
Sbjct: 91  FELGADDYVCKPFSSKELVLRVHALFRRIDVSVSAFRSGSTWTLGNSVLQLDEVSHLFNV 150

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKK 200
            G   PL   E RI+ YL++N G  + ++QI       FD + E  + +V++H+  +R K
Sbjct: 151 DGHQVPLTAAEWRIMSYLVSNSGILITRSQILEHC---FDYSFESYDRIVDTHVKNMRAK 207

Query: 201 LRNKLGFDPVDSKRFLGY 218
           +   LG   +++ R  GY
Sbjct: 208 M-GPLGSQWIETVRGYGY 224


>gi|291548048|emb|CBL21156.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 226

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 76/145 (52%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  EVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTGQ 124

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           SN       G I +        V  +   L  +E  +L Y + N G  +++ +I ++++ 
Sbjct: 125 SNPDEILSAGGIVIDKAAHQATVDDKPMDLSFKEFELLTYFLENEGIALSREKILNSVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR K+ +K
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKMGDK 208


>gi|295400059|ref|ZP_06810039.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110691|ref|YP_003989007.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294977838|gb|EFG53436.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215792|gb|ADP74396.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 225

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 5/180 (2%)

Query: 28  GFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           GF+ LE E+    L   A   V A+   ++        L   IR  S VP++ ++     
Sbjct: 29  GFSCLEAEDGDKALDVLANVKVDAVLIDIMMPKMDGFSLCERIRWQSDVPILFLTARGEE 88

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQ 143
              +     G DD + KP    E++AR+ A+ RR     N+    GP+ +   GR   V 
Sbjct: 89  WDKVKGLKLGGDDYIVKPFSPGELIARIEAVMRRAYHAGNHDLSFGPLTIDERGRKVTVD 148

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           GE   L  +E  +L +L  +RG+  ++ ++ + ++G +D       V++HI  LR KL+ 
Sbjct: 149 GEPLILTLKEFDLLLFLAKHRGQVFSREELLAKVWG-YDYTGNVRTVDTHIKTLRMKLKQ 207


>gi|228951779|ref|ZP_04113878.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229177806|ref|ZP_04305179.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228605597|gb|EEK63045.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228807901|gb|EEM54421.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 218

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
 gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
          Length = 251

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 30/216 (13%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  L   DG           EE L+ +  EDV      ++  G    EL R IR+
Sbjct: 35  LAKEGYDVLKAYDG-----------EEALKLANEEDVDMFIVDIMLPGMDGFELVRKIRS 83

Query: 70  ---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
              +   P+I +S        +   + G DD + KP   RE+LARV AI+RRL  +    
Sbjct: 84  MEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRLSAAVQSK 143

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRVAKTQIFSAI 177
           E  P ++ +  +D E+  E + +  R +++         L +L  N GK  ++  +   +
Sbjct: 144 EERPKKITA--KDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDVLLDKL 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +G +D   +   V+ HI +LR K+      DP + K
Sbjct: 202 WG-YDYYGDTRTVDVHIRRLRTKIEE----DPSNPK 232


>gi|325275465|ref|ZP_08141393.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099396|gb|EGB97314.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 240

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 14/188 (7%)

Query: 28  GFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           G+N LE    E+     AR  V  +   L+  GE  L L R ++A   + +I +S   S 
Sbjct: 26  GYNVLEAADGEQMRAQMARHTVDLVVLDLMLPGEDGLSLCRQLQATPGLAVIMLSAKGST 85

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAETGPIRVFSDGRDPE 141
              +   + G DD + KP   RE++AR+ A+ R   RL+           ++F+  R   
Sbjct: 86  LDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQRLETQAQGTAGADAQLFAGFRLEH 145

Query: 142 VQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
           V+       G+  PLPR + R+L  L+    + V++ Q+  + +G  D   ++  V+  +
Sbjct: 146 VKRLLTRPDGQTLPLPRSDYRVLRELLEANNRVVSRDQLTRSAFG-RDHLPDDRSVDMCV 204

Query: 195 SKLRKKLR 202
           S+LR+ LR
Sbjct: 205 SRLRQHLR 212


>gi|317402633|gb|EFV83192.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 223

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 3/134 (2%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A  + P++ ++    ++  +D  D G DD + KP   RE+ AR+ A+ RR    +++   
Sbjct: 69  AGLEAPVLVMTARSEIEDKIDMLDLGADDYLVKPFDLRELEARLRALLRRPAGQTSSVTA 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +    R   + G    L RRE R+LE L+   G+ VAK ++ + ++ L D ++  
Sbjct: 129 YGNLSLDLANRHVTLAGAPLELGRREFRLLEILLGKLGQTVAKERLMNQLFDLDDGSL-- 186

Query: 188 NVVESHISKLRKKL 201
           N +E  IS+LRKKL
Sbjct: 187 NALELLISRLRKKL 200


>gi|262372418|ref|ZP_06065697.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262312443|gb|EEY93528.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 219

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 16/165 (9%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L RI   H  +P+I I+    +   ++  D G +D + KP +  E+ AR+ A  R+ +  
Sbjct: 63  LKRIREQHLLIPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARIRAQLRQFQ-- 120

Query: 123 NNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +TG    F+D + DP  +     GE   L  +E +IL  LM N    V + Q+  +
Sbjct: 121 ---KQTGAYLCFADLKLDPNAKTVLKAGETVNLTAKEFQILYKLMQNPNHIVTREQLEES 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +Y  + E +E N +E  I ++RKK+ ++L    + + R LGY ++
Sbjct: 178 LYA-WGEEIESNAIEVFIYQIRKKIGSQL----IKTIRGLGYRMN 217


>gi|264676960|ref|YP_003276866.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262207472|gb|ACY31570.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 227

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 5/157 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A S VP++ +S        +   + G DD + KP   RE+LAR  A+ RR +     A  
Sbjct: 69  AGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRRSRQFQPAAPA 128

Query: 129 GPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              R       G+   +  +   L RRE ++L+ L+   G+ +++  +   I+GL  E+ 
Sbjct: 129 QLARALQIDEQGQRALIHSKALDLTRREYQLLQSLVNAAGRILSRDALLEQIWGLDSEST 188

Query: 186 EENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +   V++HI  LR KLR +L   + + + R LGYS++
Sbjct: 189 DRT-VDTHIKTLRAKLRERLPDQELIVTHRGLGYSLN 224


>gi|196228884|ref|ZP_03127750.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227165|gb|EDY21669.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 229

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 29/217 (13%)

Query: 16  IALFGDDGVSLEGF-NSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVL----------EL 63
           I +  DD V L G  ++ EFE + +Q++   D     A  I     VL          E+
Sbjct: 7   ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYEI 66

Query: 64  PRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            R +R    ++P+I ++        +     G DD V KP   +E+LARV A  RR    
Sbjct: 67  CRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRR---- 122

Query: 123 NNRAETGPIRVFSDGRDPEV------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             R +TG +  F D R           G+  PL  +E  +L +L+ N G+ +++ +I S 
Sbjct: 123 -QRKQTGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMST 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           ++G      +  V    I +    LRNK+  DP + +
Sbjct: 182 VWG-----YDSRVTPRSIDRFVNALRNKIEPDPAEPR 213


>gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 223

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 63  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 122

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 123 KQEQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204


>gi|120555780|ref|YP_960131.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325629|gb|ABM19944.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 222

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 13/167 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R  + +P+I ++        +  F+ G DD + KP + RE++AR+ A+ RR+ 
Sbjct: 56  LDVLRQLRGKTHLPVILLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALLRRI- 114

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIF 174
             + + E    R + D R    Q  ++       L   E  +L+ L+A+ G  V KT + 
Sbjct: 115 AWDQKTEVDASRTYGDLRVEPGQRRIYQNDAPVELTGTEYEVLQVLLAHAGSVVRKTDLM 174

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYS 219
               G   EA +   ++ HIS LRKKL N    DP  +++ R LGYS
Sbjct: 175 QWALGRRLEAYDRT-LDMHISNLRKKLGND---DPPRIETVRGLGYS 217


>gi|75674709|ref|YP_317130.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter winogradskyi Nb-255]
 gi|74419579|gb|ABA03778.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 234

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA S   Q+P+I ++        +    +G DD V KP    E+LARV ++ R
Sbjct: 62  IELCRRLRARSDTRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLR 121

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   S  R  +    G I +  D       G    L   E R+LE+ + + G+  ++ Q+
Sbjct: 122 R--ASPARLASVLSFGDIELDRDRHRVVRSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 180 LDSVWG-RDVYIDERTVDVHIGRLRKLLNPDGELDPIRTVRGAGYALD 226


>gi|331091615|ref|ZP_08340449.1| hypothetical protein HMPREF9477_01092 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403372|gb|EGG82931.1| hypothetical protein HMPREF9477_01092 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 224

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 2/171 (1%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            +I K + +  L  I    + +P++ ++    ++  +   DSG +D ++KP H  E+LAR
Sbjct: 52  IMIPKIDGITVLKTIRSCGNSIPVLLLTAKSEVEDKVLGLDSGANDYLSKPFHAEELLAR 111

Query: 112 VAAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ R     N+ + + G I +     +       + L  +E ++LE +M N    ++ 
Sbjct: 112 IRAMTRTQTAQNDSKLQIGNIILDRATFELSTPSGSYNLANKEFQMLELMMLNPNHLISA 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +    I+G +D   E NVV  +IS LRKKL        +   R +GYS++
Sbjct: 172 EKFIENIWG-YDSEAEMNVVWVYISYLRKKLAALHANVRIKVTRNVGYSLE 221


>gi|261419917|ref|YP_003253599.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319766731|ref|YP_004132232.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261376374|gb|ACX79117.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317111597|gb|ADU94089.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 226

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 7/152 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR+ S VP++ ++        +     G DD V KP    E+LAR+ A+ RR   
Sbjct: 62  ETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRR--T 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  R+     R+  D  +  V+ E  P  L  +E  IL  L+ +  +  ++ QI ++++G
Sbjct: 120 AGGRSAIRAARLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
              +  EE  V+SH+  +R+KLR K GF P D
Sbjct: 180 YLAD-TEERTVDSHMKNIREKLR-KAGF-PAD 208


>gi|187731798|ref|YP_001881793.1| DNA-binding transcriptional regulator QseB [Shigella boydii CDC
           3083-94]
 gi|187428790|gb|ACD08064.1| transcriptional regulatory protein QseB [Shigella boydii CDC
           3083-94]
          Length = 219

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALAERVEGLRQGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|229068949|ref|ZP_04202243.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229078583|ref|ZP_04211141.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228704727|gb|EEL57155.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714233|gb|EEL66114.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 218

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|225376547|ref|ZP_03753768.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
 gi|225211584|gb|EEG93938.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 17/169 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR +S +P+I +S        +   + G DD V KP +  E++ARV +  RR     N A
Sbjct: 67  IRENSSIPIIILSAKTEDSDKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQLGNAA 126

Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E+G        + +  D ++  V GEV  L   E  IL  L+ N+GK  +  QI+ +I+ 
Sbjct: 127 ESGDSIYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYESIWN 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223
             D    +N V  HI  +R+K+      +P + +       +GY ID N
Sbjct: 187 -EDAIGADNTVAVHIRHIREKIE----INPKEPRYLKVVWGVGYKIDKN 230


>gi|329910114|ref|ZP_08275240.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546267|gb|EGF31298.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 231

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 89/170 (52%), Gaps = 7/170 (4%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +L   R   A + +P+I ++     +  +   ++G DD + KP   RE++AR+ +
Sbjct: 62  GSGLTLLREWRSTAATAVLPVIMLTANGMDEDKVRGLNAGADDYITKPFSPRELVARIHS 121

Query: 115 IYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + RR +   +R     G I + ++     V      L + E R+L++L+A+  +  +++Q
Sbjct: 122 LLRRNRADASRPGNIYGTIVIDTERHLVTVADVPVKLDQSEFRLLKFLVAHPARVFSRSQ 181

Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++G  DEA +EE  V+ HI +LRK L    G+  + + R +GY +D
Sbjct: 182 LLDKVWG--DEAFLEERTVDVHIMRLRKSLGVAAGY--IKTVRSIGYLMD 227


>gi|229160351|ref|ZP_04288349.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623075|gb|EEK79903.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 218

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEANGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|205353035|ref|YP_002226836.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272816|emb|CAR37742.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628114|gb|EGE34457.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 224

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   +++      P 
Sbjct: 74  LPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPF 133

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 134 QVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 192

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + +LRKK++ +   D + + R  GY
Sbjct: 193 VLMGRLRKKIQAQYPHDVITTVRGQGY 219


>gi|192359014|ref|YP_001981290.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190685179|gb|ACE82857.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 227

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 17/163 (10%)

Query: 65  RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VS 122
           R +RA  +  P++ ++   + Q  +   ++G DD + KP H  E+ AR+ A+ RR    +
Sbjct: 64  RELRAKGRNFPILILTARGNWQDKVQGLEAGADDYLTKPFHPEELKARIHALLRRASGHA 123

Query: 123 NNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +++   GPI       RV+ DG + E+ G        E   L YL  + GK ++K ++  
Sbjct: 124 SSQLNYGPITIDTSAKRVYRDGAEVELTG-------FEYNTLTYLAMHPGKNISKLELTE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   D   + NV+E  + +LRKKL      + + ++R LGY
Sbjct: 177 HLYAQ-DYDRDSNVIEVFVGRLRKKLDPDGSLNLISTQRGLGY 218


>gi|91779051|ref|YP_554259.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691711|gb|ABE34909.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 223

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 6/150 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIR 132
           P++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR        A+ G + 
Sbjct: 74  PVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRSHGQEPLHAQCGTLL 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
             S  R   + GE+  L  RER +LE L+   G+ + K  +   I+GL DE+V  + +E 
Sbjct: 134 YDSVDRGFTLDGELLALTPRERSVLEVLILRNGRAINKDTLSEKIFGL-DESVNADAIEI 192

Query: 193 HISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++ +LRKKL  + +G   + + R LGY ++
Sbjct: 193 YVHRLRKKLEHSSVG---IVTLRGLGYLLE 219


>gi|325276399|ref|ZP_08142172.1| DNA-binding response regulator [Pseudomonas sp. TJI-51]
 gi|324098466|gb|EGB96539.1| DNA-binding response regulator [Pseudomonas sp. TJI-51]
          Length = 220

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A + +P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR   S
Sbjct: 63  LRRVRGAGNSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRR---S 119

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             RA    E   + +    +    QG    L  +E R+L  L+A  GK   + ++   +Y
Sbjct: 120 AGRAKVLIEHAGVMLDPATQQVHYQGLEVILTPKEYRLLHELLAQPGKVFTRERLTQLLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE  E N +E HI  LRKKL N L    + + R +GY ++
Sbjct: 180 G-WDEEPESNTLEVHIYHLRKKLNNGL----IRTVRGIGYLVE 217


>gi|307822689|ref|ZP_07652920.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307736293|gb|EFO07139.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 225

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           + R+ +    VP++ ++     Q  ++  ++G DD + KP H+ E+ AR+ A+ RR   V
Sbjct: 63  IKRLRKDKVTVPILILTARSRWQEKVEGLEAGADDYLVKPFHYEELQARINALIRRSAGV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           ++       I + +  ++  V G    L   E ++LEYLM  +G+ V+K+ + + IY   
Sbjct: 123 AHPVLTHDNIELDTVAQEVTVSGVKQELTAYEYKVLEYLMFRKGEVVSKSVLTAHIYDED 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + NV+E  I +LRKKL       P+++ R  GY I
Sbjct: 183 FDR--DSNVLEVFIGRLRKKLDPDGTRKPIETLRGRGYLI 220


>gi|262376401|ref|ZP_06069630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308540|gb|EEY89674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 223

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 11/167 (6%)

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L L  I +    +P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR 
Sbjct: 61  ILVLKNIRQKFPNLPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALIRRS 120

Query: 120 KVSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + N   +T      G + +  +       G+   L  RE  IL  ++ +  K  +K  +
Sbjct: 121 GLKNTGIDTNKKLSHGSLELDLEQHIALFNGQAIELSNREWSILMAMLNHPNKIFSKNDL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +Y  FD  V  N VE +I  LR     KLG D + + R LGY +
Sbjct: 181 EDKLYD-FDSDVSSNTVEVYIHHLRA----KLGKDFIRTIRGLGYRL 222


>gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
 gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
          Length = 238

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 11/118 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAET-------GPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LARV A+ RR     VS+ + E        G +RVF +  +  +Q
Sbjct: 96  GADDYMTKPFSPREVLARVKAVLRRFTQNVVSDEKDEPQEKMFEFGQLRVFPERFEVFLQ 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            E      +E  +L YL+ N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+
Sbjct: 156 DEALEFTPKEFELLIYLLENKNRVLTRDQLLSAVWK-YDFAGDTRIVDVHISHLRDKI 212


>gi|146306206|ref|YP_001186671.1| two component heavy metal response transcriptional regulator
           [Pseudomonas mendocina ymp]
 gi|145574407|gb|ABP83939.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas mendocina ymp]
          Length = 224

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 19/165 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           IR +S+ P++ ++    L   L  FDSG DD + KP    E+LARV ++ RR        
Sbjct: 66  IRRNSRTPVMMLTARGRLADKLKGFDSGADDYLVKPFEFPELLARVRSLLRRGEQVSAPD 125

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            LKV +   +    R + +G+  ++  + F L       L  LM   G+ +++TQI S +
Sbjct: 126 VLKVDDLELDPARHRAYRNGQRIDLTTKEFAL-------LHLLMRRSGEVLSRTQIISLV 178

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + FD   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 179 WDMNFD--CDTNVVEVSIRRLRAKIDDPFENKLIHTLRGVGYVLE 221


>gi|104783276|ref|YP_609774.1| DNA-binding response regulator TctD [Pseudomonas entomophila L48]
 gi|95112263|emb|CAK16990.1| putative DNA-binding response regulator TctD [Pseudomonas
           entomophila L48]
          Length = 223

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPI 131
           +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  +   R +  GP+
Sbjct: 73  LPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLGGERQQRCGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
               D R   +  E   L +RE+ +LE L+A  G+ ++K Q+ + ++GL DE    + +E
Sbjct: 133 VYDLDTRRFTLGDEPLTLTQREQSVLEALIARPGRVMSKEQLAAQVFGL-DEEASPDAIE 191

Query: 192 SHISKLRKKL 201
            +I +LRKKL
Sbjct: 192 IYIHRLRKKL 201


>gi|150390957|ref|YP_001321006.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950819|gb|ABR49347.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 225

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 11/157 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ ++        L  FD GVDD + KP   +E++ARV A+ +R   SN + 
Sbjct: 69  IREKSNVPILILTARSEEHDKLFGFDLGVDDYMTKPFSVKELVARVKALLKR---SNRQL 125

Query: 127 ETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            T       ++V   G    +QGE   L  +E  +L   + N+ + +++  I   ++G +
Sbjct: 126 STETLIVQGLKVDKKGHQVFLQGERLMLTPKEYDLLLIFLHNQNQALSREVILDGVWG-Y 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D   +   V++H+ +LR KL+ ++G + + + R LGY
Sbjct: 185 DYYGDLRTVDTHVKRLRHKLK-EMG-EQIKTVRGLGY 219


>gi|332366461|gb|EGJ44209.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 224

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFERGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V          G+   L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 TVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTVSVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+       + + R +GY
Sbjct: 192 VYVSKIRKKLKGTAFAKNLHTLRSVGY 218


>gi|331091201|ref|ZP_08340042.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404648|gb|EGG84187.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 226

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 6/149 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L+L   IR     P+I ++   S Q  ++   +G DD + KP    E+LAR++A  
Sbjct: 59  GMNGLDLCASIRDFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHL 118

Query: 117 RRLKVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR + S+N+ ++      I  +SD R   ++G    L  +E  I++ L AN G+   + +
Sbjct: 119 RREQRSHNKTKSKFLEELIIDYSD-RSLYIKGNKIELSNKEFEIIQLLSANAGQVFDREK 177

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I+  I+G+ D + +  V++ HI K+R K 
Sbjct: 178 IYDCIWGI-DGSGDSVVIKEHIRKIRLKF 205


>gi|325696865|gb|EGD38753.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327459810|gb|EGF06150.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
          Length = 224

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V          G+   L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 TVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTVSVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+       + + R +GY
Sbjct: 192 VYVSKIRKKLKGTTFAKNLHTLRSVGY 218


>gi|270261453|ref|ZP_06189726.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044937|gb|EFA18028.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 223

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           GE  L L R  RAH  ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+
Sbjct: 56  GEDGLSLIRRWRAHQMKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQAL 115

Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR   +++      P ++    R+  V  +   L   E  I+E L+ N GK V+K  + 
Sbjct: 116 MRRNSGLASQVIVLPPFQIDLSRRELSVGEQQIKLTAFEYTIIETLIRNAGKVVSKDSLM 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +Y    E  E + ++  + +LRKKL+ +   + + + R  GY  D
Sbjct: 176 LQLYP-DAELRESHTIDVLMGRLRKKLQAEYPQEVITTVRGQGYRFD 221


>gi|228971393|ref|ZP_04132019.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978006|ref|ZP_04138385.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228781667|gb|EEM29866.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228788260|gb|EEM36213.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 209

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 49  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 108

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 109 KQEQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 168

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 169 G-YDYAGSTRTVDTHVKTMRLKL 190


>gi|75908637|ref|YP_322933.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
 gi|75702362|gb|ABA22038.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
          Length = 684

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 29/223 (13%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           ++L    Y   F  DG   EG+N  E   +        +  ++          +   R +
Sbjct: 18  KSLTSQHYTVDFAKDGE--EGWNFAELYTYDLILLDLILPKLDG---------ISFCRQL 66

Query: 68  RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           RA  +Q P++ ++   +  T +   D+G DD V KP   +E+LAR+ A+ RR        
Sbjct: 67  RASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGGSALPPL 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N R +     V  DG+       +  L  +E  +LE  + N  +  + + +   ++
Sbjct: 127 LEWNNLRLDPSTCEVACDGK-------LLHLTPKEYGLLELFLRNSHRIFSCSALIDQLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             F+E   E+ V SHI  LR+KL+   +  DP+D+   +GY +
Sbjct: 180 S-FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRL 221


>gi|297572158|ref|YP_003697932.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932505|gb|ADH93313.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 248

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 8/156 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+    S +P++ ++    L+  L   ++G DD V KP    E++ R+  I RR   S
Sbjct: 73  LRRMREQGSDIPVLFLTAKDDLRDKLQGLNAGADDYVTKPFSLEEVVTRIQVILRRTTPS 132

Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++  IR        D  +   +G +  L   E ++L YLM N  + V+K QI   +
Sbjct: 133 EE--DSALIRYHDLELNEDTYEVRRRGHMVELSPTEYKLLRYLMVNAERVVSKVQILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +  +D   E ++VES+IS LR+K+ +  G    D K
Sbjct: 191 WD-YDWIGEASIVESYISYLRRKIDSADGLGITDPK 225


>gi|283457122|ref|YP_003361686.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133101|dbj|BAI63866.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 247

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 85/160 (53%), Gaps = 7/160 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L RI + + +VP + ++   S+   ++   +G DD V KP    E++ R+  + +R  V+
Sbjct: 85  LSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSGVA 144

Query: 123 N-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + AE   G + +  D R+    GE   L   +  +L YLM N  + V+K+QI   ++ 
Sbjct: 145 SIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDNVWN 204

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            +D   + N+VE +IS LRKK+   +G +P + + R  GY
Sbjct: 205 -YDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAGY 241


>gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121]
          Length = 219

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR +
Sbjct: 61  LEICRQIRQQQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      I +  +  +  V G    L + E  +   L  N+   + + QI + ++G 
Sbjct: 120 PKKDTININGIIIDKEAFEVTVDGTQLDLTKTEYDLFYVLAENKNHVLQREQILNHVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           ++  VE NVV+ +I  LR KL+   G D V ++ R +GY I
Sbjct: 179 YNTEVETNVVDVYIRYLRNKLK-PFGKDKVIETVRGVGYVI 218


>gi|167761524|ref|ZP_02433651.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704]
 gi|167661190|gb|EDS05320.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704]
          Length = 224

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D + +++  +      G+   GF   E   +L++ A E    +   ++  GE  
Sbjct: 1   MIFCVEDDSNIRELVVYTLESTGLKARGFE--EGSSFLEALALETPDLVLLDIMLPGEDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL + ++A  +   +P+I ++   +    +   D+G DD V KP    E+++R+ A+ R
Sbjct: 59  MELLKKLKASPKTRDIPVIMVTAKGAEYDKVMGLDTGADDYVTKPFGMMELVSRIKAVLR 118

Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R      R E     G I +     +    GEV  L  +E  +L+ LM N    + + Q+
Sbjct: 119 RSAREGVRKEDSIVIGEIEMNLKKHEVTAAGEVISLTLKEYELLKRLMKNSNIVLTRDQL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +D   E   V+ H+  LR+KL +    + +++ R +GY +
Sbjct: 179 LEDIWG-YDFDGETRTVDVHVRTLRQKLGS--AGERIETVRGVGYRM 222


>gi|157148587|ref|YP_001455906.1| DNA-binding transcriptional regulator QseB [Citrobacter koseri ATCC
           BAA-895]
 gi|157085792|gb|ABV15470.1| hypothetical protein CKO_04414 [Citrobacter koseri ATCC BAA-895]
          Length = 219

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D AL+ DG  A     G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLVEDDALIGDGIKAGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R      + P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LREWR--EQGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALLRRAN 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N    G + +        + G+  PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQVSNELRHGQVTLNPGNLVATLAGDPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N +E H+  LR+    KLG D + +   +GY++
Sbjct: 180 TWDEDVSSNTIEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|118444264|ref|YP_877513.1| subtilin biosynthesis regulatory protein spaR [Clostridium novyi
           NT]
 gi|118134720|gb|ABK61764.1| subtilin biosynthesis regulatory protein spaR [Clostridium novyi
           NT]
          Length = 220

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L + IR     P+I ++     Q  +     G DD ++KP    E+ ARVAA  RR  + 
Sbjct: 62  LCKEIRNLVDCPIIFLTAKTMEQDIVMGLSLGGDDYISKPFGISELRARVAAHLRREHRE 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N      ++     ++     ++ P  + E  I EYL  N G+  +K +I+  ++G++
Sbjct: 122 KQNAFSVSDVKFNITAKEAYYNEKLVPFTKSEYSICEYLAINHGQVFSKERIYEKVFGVY 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             +    +VE HI  +R KL++ +G +P+++   +GY
Sbjct: 182 GNSDTTAIVE-HIKNIRSKLKS-IGINPIETVWGIGY 216


>gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 20/158 (12%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           QVP++ ++   +    +   D+G DD V KP    E+LAR+ A+ RR         TGP 
Sbjct: 72  QVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRR---------TGPH 122

Query: 132 R----VFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           R    V  D        EVF       L R E  +L+ LM N G+ V++  +   ++G +
Sbjct: 123 RSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           D A+E N +++ I  LR+K+  +     + + R  GYS
Sbjct: 182 DRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGYS 219


>gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IRA    P+I I+   S+   +   D+G DD + KP    E+LAR+ A++RR+ 
Sbjct: 62  MEVCRRIRAAKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVH 121

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              N      +  F D       R  +   E   L +RE  +L   M N    + +  + 
Sbjct: 122 PEAN----AQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALL 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
             ++G FD  VE NVV+ ++  LR+KL      D  D +R++
Sbjct: 178 DKVWG-FDAEVETNVVDVYVRYLRQKL------DEHDKERYI 212


>gi|326386033|ref|ZP_08207657.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209258|gb|EGD60051.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 258

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 4/183 (2%)

Query: 40  SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           ++ R D + ++  L G     L + R+       P++ IS    +   +    +G DD +
Sbjct: 71  AAERFDAATVDRMLPGLDGLTL-VARMRARQITTPVLVISALGDVDERIAGLRAGGDDYL 129

Query: 100 NKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157
            KP    E++ R+  + RR +    +     GP+ +    R   V GE   L  +E R+L
Sbjct: 130 AKPFSPAEMVTRIEVLLRRARDYPEDGFLRAGPLELDLVKRKAWVMGEAVELLNKEFRLL 189

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           E+L+ + G  VA+  IF  ++G + EA  +N++  HI++LR+KL       P+++ +  G
Sbjct: 190 EFLVRHAGHVVARQVIFEQVWGRYFEA-SDNLINVHIARLRRKLERADWPAPIETIKGEG 248

Query: 218 YSI 220
           Y +
Sbjct: 249 YRL 251


>gi|148270636|ref|YP_001245096.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|170289342|ref|YP_001739580.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|147736180|gb|ABQ47520.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
 gi|170176845|gb|ACB09897.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 226

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 6/157 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+P +  +H ++ +I IS        +   + G DD V KP + RE+LARV A+ RR+  
Sbjct: 64  EIPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGK 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +F +       G+   +  +E  +L+ L     K  ++ +I + ++G  
Sbjct: 124 EQKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWG-- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D+ V + VV+ HIS     +R+K+G   + + R LGY
Sbjct: 182 DDYVSDRVVDVHIS----AIRSKIGKGWIKTVRGLGY 214


>gi|56476059|ref|YP_157648.1| two-component response regulatory protein [Aromatoleum aromaticum
           EbN1]
 gi|56312102|emb|CAI06747.1| Two-component response regulatory protein [Aromatoleum aromaticum
           EbN1]
          Length = 228

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 3/159 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+    S +P++ ++    ++  +   D+G DD + KP    E+ ARV A+ RR    
Sbjct: 63  LKRLRARKSALPVLILTAQDGVEERVRGLDAGADDYLTKPFALPELEARVRALTRRGTGQ 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E G +      R  ++ G+V  L  RE  +LE      G+ V+K QI   + G + 
Sbjct: 123 PRCIEIGSLSYDQADRVAKINGQVVELSAREVGLLEVFALRVGRLVSKDQIVDHLCG-WG 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E V  N +E ++ +LRKKL +  G   V + R LGY ++
Sbjct: 182 EEVSSNAIEVYVHRLRKKLEDS-GVRIV-TVRGLGYCLE 218


>gi|295093355|emb|CBK82446.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 2/161 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L +I      VP+I ++        ++  D G DD + KP   +E+LAR+ AI RR  + 
Sbjct: 63  LSKIRAEGCDVPVIMLTAKAETDDKINGLDLGADDYLAKPFETKELLARIRAITRRKSEA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   + G   + S   +    G    L  +E +I+E LMAN+   ++   +   I+G +
Sbjct: 123 VSTEMKYGDCTLNSLNYELSSSGGSVKLQNKEYQIMELLMANQNAIISAELMMEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   E +VV  +IS LRKKL        + + R  GY +++
Sbjct: 182 DTDTEISVVWVNISYLRKKLSQIGSGVSIKAVRNQGYILEY 222


>gi|254501265|ref|ZP_05113416.1| phosphate regulon transcriptional regulatory protein PhoB
           [Labrenzia alexandrii DFL-11]
 gi|222437336|gb|EEE44015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Labrenzia alexandrii DFL-11]
          Length = 236

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA     ++P+I ++        +    +G DD V KP    E++ARV AI R
Sbjct: 66  IELCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILR 125

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   +V +    +G I +  +        +   L   E R+LE+LM   G+  ++ Q+  
Sbjct: 126 RASPEVVSTMLRSGDIELDRETHRVRRSTKEIHLGPTEFRLLEFLMTAPGRVFSREQLLD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK L      DP+ + R  GY+ +
Sbjct: 186 GVWG-HDVYVDERTVDVHVGRLRKALNKGKAKDPIRTVRGAGYAFN 230


>gi|209520018|ref|ZP_03268796.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209499557|gb|EDZ99634.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 219

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 6/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R+  A   VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR +  
Sbjct: 63  LKRVRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELVARCHALLRRAQGR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +      + V    +  +V     PL  RE  IL  L+ N G   +++++  ++YG +
Sbjct: 123 SIDLIRYQNLTVNPAAQTVQVDEARVPLTSREWAILLQLLTNLGIPQSRSRLEESLYG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E +E N +E H+S LRK    KLG + + + R +GY ++
Sbjct: 182 QEEIESNAIEVHVSNLRK----KLGANLIKTVRNIGYVME 217


>gi|303238774|ref|ZP_07325306.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302593653|gb|EFL63369.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 238

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL+  R IR  +  P+I +S    +   +   DSG DD + KP    E+LARV A+ 
Sbjct: 59  GMTVLQRLRKIRITT--PVILLSARSEISAKVAGLDSGADDYLVKPFSLDELLARVRALG 116

Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR     SNN    G I + +       +     L  RE  +LE+L+  +G    K +I 
Sbjct: 117 RRKGELFSNNILVYGDIELNTASLKLSTEQSEVALTCRECELLEFLIRRKGIISPKERII 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G FD +   N VE +IS LRKKL        + + R  GY I+
Sbjct: 177 EKLWG-FDSSAGANHVEVYISFLRKKLEYIGSNVVITTHRGAGYEIN 222


>gi|291528146|emb|CBK93732.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 223

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 6/130 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPR 151
           G +D + KP   RE++ARV  ++ R K  ++ +    G I    D ++    G+V  L  
Sbjct: 93  GAEDYITKPFSVRELVARVNRVFLRRKSDDSSSVIHAGSISYDLDKKEARRAGQVIALSS 152

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
            E RIL+ L  N  K V++  +   I+    EA   +V +  ++   K++R KLG D + 
Sbjct: 153 LENRILDLLFTNHDKAVSRNAVLDCIW----EATGNDVYDHTVTVYMKRIRAKLGEDVIK 208

Query: 212 SKRFLGYSID 221
           + + +GY +D
Sbjct: 209 TVKGIGYRVD 218


>gi|15644015|ref|NP_229064.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thermotoga maritima MSB8]
 gi|4981814|gb|AAD36333.1|AE001781_4 phosphate regulon transcriptional regulatory protein PhoB
           [Thermotoga maritima MSB8]
          Length = 229

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+P +  +H ++ +I IS        +   + G DD V KP + RE+LARV A+ RR+  
Sbjct: 67  EIPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGK 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +F +       G+   +  +E  +L+ L     K  ++ +I + ++G  
Sbjct: 127 EQKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWG-- 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           D+ V + VV+ HIS     +R+K+G   + + R LGY 
Sbjct: 185 DDYVSDRVVDVHIS----AIRSKIGKGWIKTVRGLGYK 218


>gi|332994661|gb|AEF04716.1| transcriptional regulatory protein CpxR [Alteromonas sp. SN2]
          Length = 246

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 9/134 (6%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQGEV- 146
           G DD + KP +HRE++AR+ AI+RRL ++++            + + S  +  +V GEV 
Sbjct: 111 GADDYLPKPFNHRELVARIKAIFRRLSLTHSGGTIEQDLIVNELFLSSSSQVAKV-GEVE 169

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L   E  IL  LM N G RV K +I   + G   +A + + ++ H+S LRKK+     
Sbjct: 170 MTLTSTEFSILRLLMLNTGSRVTKEEISLKVLGKSLQAFDRS-IDMHVSNLRKKIAAISN 228

Query: 207 FDPVDSKRFLGYSI 220
            + + + R +GY +
Sbjct: 229 IEKIKTIRGVGYML 242


>gi|330811233|ref|YP_004355695.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379341|gb|AEA70691.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 240

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 11/163 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L + R +R H   P++ ++        +   D G DD V KP+  R +LAR+
Sbjct: 57  LMLPGEDGLSICRKVRGHYDGPILMLTARTDDTDQIQGLDLGADDYVCKPVRPRLLLARI 116

Query: 113 AAIYRR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR      +     R + GP+ V    R+  +QG    L   E  +L  L++N G+
Sbjct: 117 QALLRRSEPEPSVAQKQRRLQFGPLVVDDALREAWLQGNGIELTSAEFDLLWLLVSNAGR 176

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            +++ +IF+A+ G+  +  ++  ++  IS++R     K+G DP
Sbjct: 177 ILSREEIFTALRGIGYDG-QDRSIDVRISRIRP----KIGDDP 214


>gi|228957669|ref|ZP_04119416.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229108854|ref|ZP_04238459.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126714|ref|ZP_04255726.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229149599|ref|ZP_04277831.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228633945|gb|EEK90542.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228656654|gb|EEL12480.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228674623|gb|EEL29862.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228802011|gb|EEM48881.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 218

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|126657980|ref|ZP_01729132.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620618|gb|EAZ91335.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 231

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 105/217 (48%), Gaps = 15/217 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L++  YI  +  DG   E  N L     ++         I  +L+ K   +  + +I 
Sbjct: 18  RVLIQHNYIVDWAKDG---EEANDL-----IEMGLNLYTIGIFDWLLPKISGIDLIKKIR 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           + +S +P++ ++     +  +   D+G DD + KP    E+LAR+ A+ RR    N +  
Sbjct: 70  QQNSSLPILMLTAKDREEDKVIGLDAGADDYLVKPFGMAELLARLRALQRRFPTINPQKL 129

Query: 128 T-GPIRV-FSD----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           T G I + +S+     RD   + +  PL  +E ++LEY M +  + V + Q+ S ++   
Sbjct: 130 TVGHITLDYSNYTIFYRDQMGKHQPIPLTNKEFQLLEYFMKHPNQIVTRDQLLSQLWEWG 189

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +E +  NVV + I  LR+KL    G + +++   LGY
Sbjct: 190 NEPM-SNVVAAQIRLLRRKLEPHCGDNYIETVYGLGY 225


>gi|160898512|ref|YP_001564094.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364096|gb|ABX35709.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
 gi|222834138|gb|EEE72615.1| predicted protein [Populus trichocarpa]
          Length = 238

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 15/222 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + D       D+G  LE  +    ++ L+   R    A+   ++  G   LE
Sbjct: 8   LLVEDDAHIADLLTLHLRDEG--LEVMHCARGDDGLRQLERGGWDALVLDIMLPGVDGLE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R  RA ++  P+I IS   S    +   + G DD + KP    E++ARV A+ RR++ 
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVQRILGLEIGADDYLAKPFSVLELVARVKALLRRVEA 125

Query: 121 -VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              N R E+G + +     DP      + G    L  RE  +L +     GK  ++  + 
Sbjct: 126 LAQNARLESGSLTIAGLAMDPVARDARLHGARLDLTPREFDLLYFFARQPGKVFSRMDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +A++G   E   E+ V +HI++LR K+      DP    R L
Sbjct: 186 NAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAQPARIL 222


>gi|15902751|ref|NP_358301.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae R6]
 gi|116515465|ref|YP_816195.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae D39]
 gi|182683717|ref|YP_001835464.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           CGSP14]
 gi|298503196|ref|YP_003725136.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|5830517|emb|CAB54564.1| response regulator [Streptococcus pneumoniae]
 gi|15458297|gb|AAK99511.1| Response regulator, transcriptional regulatory protein
           [Streptococcus pneumoniae R6]
 gi|116076041|gb|ABJ53761.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae D39]
 gi|182629051|gb|ACB89999.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           CGSP14]
 gi|298238791|gb|ADI69922.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 246

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G I V       +V+     L
Sbjct: 113 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVEL 172

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  ++G FD     +VVE ++SK+RKKL+     + 
Sbjct: 173 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 231

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 232 LQTLRSVGY 240


>gi|281412946|ref|YP_003347025.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281374049|gb|ADA67611.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 222

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 6/157 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+P +  +H ++ +I IS        +   + G DD V KP + RE+LARV A+ RR+  
Sbjct: 60  EIPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGK 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +F +       G+   +  +E  +L+ L     K  ++ +I + ++G  
Sbjct: 120 EQKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWG-- 177

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D+ V + VV+ HIS     +R+K+G   + + R LGY
Sbjct: 178 DDYVSDRVVDVHIS----AIRSKIGKGWIKTVRGLGY 210


>gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 239

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 13/155 (8%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-- 129
           + P++ ++     Q  +     G DD V KP    E++AR+ A+ RR   ++  AET   
Sbjct: 82  KYPILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRR---THGGAETTVD 138

Query: 130 PIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              V +D R  E   EV        L   E ++L YLM N G+ V+KTQI   ++  +D 
Sbjct: 139 SALVVADLRLDEDSHEVHRGDVNIELSPTEFKLLRYLMLNAGRVVSKTQILDHVWD-YDW 197

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + E  +VES+IS LR+K+ + +G   + +KR +GY
Sbjct: 198 SGEVGIVESYISYLRRKI-DVIGEPMIHTKRGIGY 231


>gi|17232666|ref|NP_489214.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134312|dbj|BAB76873.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 601

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 18/166 (10%)

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----- 118
           R +RA  +Q P++ ++   +  T +   D+G DD V KP   +E+LAR+ A+ RR     
Sbjct: 64  RQLRASGNQTPILLLTSQDTSITKVTGLDAGADDYVAKPFDFQELLARIRALLRRGGSAL 123

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              L+ +N R +     V  DG+       +  L  +E  +LE  + N  +  + + +  
Sbjct: 124 PPLLEWNNLRLDPSTCEVACDGK-------LLHLTPKEYGLLELFLRNSHRIFSCSALID 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++  F+E   E+ V SHI  LR+KL+   +  DP+D+   +GY +
Sbjct: 177 QLWS-FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRL 221


>gi|103486311|ref|YP_615872.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976388|gb|ABF52539.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 232

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAET 128
           + VP+I ++     +  +   ++G DD V KP   RE++ARV+A+ RRL+  ++      
Sbjct: 76  ANVPIIMLTARGEEEDRIRGLETGADDYVTKPFSPRELVARVSAVLRRLRPALAGEMLSY 135

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             I + S        G+V  +   E R+L + M + G+  ++ Q+  +++G  D  +E  
Sbjct: 136 ADIELDSVAHKVVRGGQVVTMGPTEFRLLRHFMEHPGRVFSRGQLLDSVWGQ-DSDIELR 194

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            V+ HI +LRK +      D + + R  GY++D
Sbjct: 195 TVDVHIRRLRKAINLPGTSDIIRTVRSAGYALD 227


>gi|313835331|gb|EFS73045.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL037PA2]
 gi|314928282|gb|EFS92113.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL044PA1]
 gi|314969982|gb|EFT14080.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL037PA3]
 gi|328905911|gb|EGG25687.1| two-component response regulator, KdpE [Propionibacterium sp. P08]
          Length = 227

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 8/149 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +V+E    +R  SQ P++ IS        ++  D+G DD V KP    E+LAR+  + 
Sbjct: 59  GVQVIE---AVRGWSQAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLT 115

Query: 117 RRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR+    + AE     G +RV          G    L   E R+LE L+ N G+ V +  
Sbjct: 116 RRISHDRSGAEPVIAFGTVRVDLTSHTVTRDGANVRLTPTEWRVLELLIHNEGRLVTRQT 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + + ++G  +   +   +  +IS+LRKKL
Sbjct: 176 LLNQVWG-SEHVTDTGYLRLYISQLRKKL 203


>gi|319764865|ref|YP_004128802.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330827070|ref|YP_004390373.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317119426|gb|ADV01915.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329312442|gb|AEB86857.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 224

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+    S +P++ ++    ++  +   D G DD + KP    E+ ARV A+ RR +  
Sbjct: 64  LKRLRGRGSALPVLILTAADGIEERVKGLDLGADDYMAKPFALSELEARVRALTRRGMGG 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++   + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   +   +
Sbjct: 124 TSATIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLCE-W 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 183 GEEVSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220


>gi|229092565|ref|ZP_04223721.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228690852|gb|EEL44627.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G +D   ++  V++HI    KKLRNKLG
Sbjct: 184 WG-YDYYGDDRTVDTHI----KKLRNKLG 207


>gi|182420098|ref|ZP_02951332.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237669479|ref|ZP_04529459.1| two component transcriptional regulator, winged helix family
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376135|gb|EDT73722.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237654923|gb|EEP52483.1| two component transcriptional regulator, winged helix family
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 227

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 13/141 (9%)

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF 147
           L  F+ G +D + KP    E+ AR+ AI +    S  + +T  I  F D +      ++F
Sbjct: 88  LKAFNLGANDYLTKPFFMEELKARINAILK----SMGKVKTANILEFKDLKIDMKTKKIF 143

Query: 148 ------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
                  L  +  ++LEYL+ N+G  + K QIF  I G   +A  E ++E +IS+LRK+L
Sbjct: 144 IEDNEIELNEKLYKLLEYLVLNKGVLLFKEQIFDNICGYNSDAATE-IIEVYISRLRKQL 202

Query: 202 RNKLGFDP-VDSKRFLGYSID 221
            N  G+   + +KR +GY +D
Sbjct: 203 -NSFGYGKYLVTKRGMGYILD 222


>gi|163744528|ref|ZP_02151888.1| putative two-component response regulator transcriptional
           regulatory protein [Oceanibulbus indolifex HEL-45]
 gi|161381346|gb|EDQ05755.1| putative two-component response regulator transcriptional
           regulatory protein [Oceanibulbus indolifex HEL-45]
          Length = 223

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L L + +R A+   P++ +S    L   ++  ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LTLVKSVRGANVDTPILFLSALGGLNDRVNGLEAGADDYLVKPFAFSELSARLTALARRP 119

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++    R +   + +          G+   +  RE R+L YLM N  + V +T +  A+
Sbjct: 120 PMQAEETRLQVADLEIDLIRHTVCRSGQEIAVQPREFRLLSYLMKNAERVVTRTMLLEAV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   FD     NVVE+HIS+LR K+        + + R  GYS+
Sbjct: 180 WDFHFDP--NTNVVETHISRLRNKIDKPFDQPLIHTVRGAGYSL 221


>gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
 gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
          Length = 229

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 11/155 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P+I +S       T+   ++G DD V KP + RE++ARV    RR +     A  G +
Sbjct: 79  HIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRRTRP----AAAGAL 134

Query: 132 RVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
             F D + DPE       G    L   E R+L  L+   G+  ++ Q+   ++G  D  V
Sbjct: 135 LSFDDIQLDPERHRVSRAGSELKLGPTEYRLLTTLLEKPGRVFSRDQLLDHVWG-RDIYV 193

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   V+ HI++LRK L  + G DP+ + R  GY++
Sbjct: 194 DTRTVDVHIARLRKALTREGGGDPIRTVRGAGYAL 228


>gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 63  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 122

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 123 KQEQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204


>gi|49475266|ref|YP_033307.1| two-component system regulatory protein [Bartonella henselae str.
           Houston-1]
 gi|49238072|emb|CAF27279.1| Two-component system regulatory protein [Bartonella henselae str.
           Houston-1]
          Length = 222

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 22/139 (15%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEV 142
            D+G DD V KP H  E++AR+ A+ RR        L       +T   RVF D      
Sbjct: 91  IDAGADDYVVKPFHLEELMARLRALIRRSTGHATSTLCCGKVLLDTKTSRVFFD------ 144

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201
            G++  L   E R+L YLM +  + V++T++   +Y   FD+  + N VE  + +LRK  
Sbjct: 145 -GQLIKLTSYEFRLLSYLMHHGDRIVSRTELTEHLYDQDFDK--DSNTVEVFVGRLRK-- 199

Query: 202 RNKLGFDPVDSKRFLGYSI 220
             KLG D +++ R +GY +
Sbjct: 200 --KLGMDLIETIRGMGYRV 216


>gi|332669109|ref|YP_004452117.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338147|gb|AEE44730.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 238

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 36/222 (16%)

Query: 31  SLEFEEWLQSSAREDVSAIEAF-----------LIGKGEKVLELPRIIRAHSQVPLIGIS 79
            LE E +   +A + + AIE F           L+  G    E+ R +R  S VP+I ++
Sbjct: 20  QLEREGYEVVAAADGLQAIELFEEHGADLVLLDLMLPGLPGTEVCRRLRLTSDVPVIMLT 79

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------------LKVSNN 124
                   +   + G DD V KP   RE+LAR+ A+ RR               L   + 
Sbjct: 80  AKDDEIDKVVGLELGADDYVTKPYSSRELLARMRAVLRRREAAVVAGAGAPAPVLDEEDG 139

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
              +GP+ +  D    +V+GE+   P +E  +LE L+ N G+ + + Q+   I+G  D  
Sbjct: 140 LLVSGPVEMDVDRHTVKVRGELVAFPLKEFDLLEMLLRNAGRVLTRGQLIDRIWG-SDYV 198

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221
            +   ++ H+    K++R K+  DP +     + R LGY ++
Sbjct: 199 GDTKTLDVHV----KRVRAKIEADPANPTLLLTVRGLGYKLE 236


>gi|260429018|ref|ZP_05782995.1| transcriptional regulatory protein TctD [Citreicella sp. SE45]
 gi|260419641|gb|EEX12894.1| transcriptional regulatory protein TctD [Citreicella sp. SE45]
          Length = 223

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 24/229 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED--VSAIEAFLI------ 54
           ++I+D A +  G IA F   G++ +   SL       ++AR+   V   +A ++      
Sbjct: 4   LMIEDAADLAAGVIAQFSKSGIACDLAGSL-------AAARDHLAVQGYDALVLDINLPD 56

Query: 55  GKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G G  +L   R IRA   + P++ ++   ++   +   D G DD + KP   RE+ AR+ 
Sbjct: 57  GSGRDLL---REIRARGDRTPVLMLTALFTIDDRVAALDLGADDYLVKPFDQRELEARLR 113

Query: 114 AIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR  +   +    G +R         + G    L RRE  +L  L+ +  + ++K +
Sbjct: 114 ALVRRDAEQKGDELALGQLRYSPAQMQATLDGNRLDLTRREAALLGLLLRHADQPLSKER 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYSI 220
           ++  ++   D  V  N +E +I++LRKKL    G D V  ++R +GY I
Sbjct: 174 LYDGLFAFNDADVGLNAIELYIARLRKKL---AGSDVVILTQRGVGYRI 219


>gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 225

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 2/148 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
             P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR   S + +   G 
Sbjct: 74  NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGD 133

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + +  +     G+   L ++E +ILEYL+ N+ + V K ++   ++  FD+ V  +V+
Sbjct: 134 LILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS-FDDEVFSDVL 192

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            SHI  LRKK+        + + R +GY
Sbjct: 193 RSHIKNLRKKVDKGFKRKIIHTVRGIGY 220


>gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905]
 gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905]
          Length = 238

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 11/118 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAET-------GPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LARV A+ RR     VS+ + E        G +RVF +  +  +Q
Sbjct: 96  GADDYMTKPFSPREVLARVKAVLRRFTQNVVSDEKDEPQEKMFEFGQLRVFPERFEVFLQ 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            E      +E  +L YL+ N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+
Sbjct: 156 DEALEFTPKEFELLIYLLENKNRVLTRDQLLSAVWK-YDFAGDTRIVDVHISHLRDKI 212


>gi|90426377|ref|YP_534747.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108391|gb|ABD90428.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 219

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 15/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++ DG  A     G S++   + E  +   + A  + SAI   ++      +
Sbjct: 3   ILVVEDDAMIADGIRAGLTLAGASIDCVATCE--DAAAALAANNFSAIVLDIMLPDGSGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA     P++ ++    +   +   DSG DD + KP    E+ AR+ AI    +
Sbjct: 61  DLLRKLRAGGDTTPVLLLTALDEVGDRISGLDSGADDYLGKPFDLDELGARLRAII---R 117

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + RA T    G IR+F    +  + G   PL RRE  +L  LM   G   +++++   
Sbjct: 118 RRDGRAATCLEHGAIRLFPADNNATLDGAPVPLSRREFAVLHALMERPGVLRSRSELEER 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG  DE VE N VE H+  LR     KLG   +++ R +GY +
Sbjct: 178 LYGWGDE-VESNAVEVHVHNLRA----KLGRAAIETVRGIGYRM 216


>gi|330810541|ref|YP_004355003.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378649|gb|AEA69999.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 7/169 (4%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L++ + +R+ S VP+I I+        L   D G DD + KP   RE++ARV
Sbjct: 56  LMLPGRDGLQVCQELRSFSAVPIIMITARVEEVDRLLGLDLGADDYICKPFSPREVVARV 115

Query: 113 AAIYRRLKVSNNRAETGPIRVF--SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            AI RR   S     T P R+    D     + G    L   E R+L  L  + G+  ++
Sbjct: 116 KAILRR---SPQLLVTAPARLLIDEDRYQASLDGVALDLTPLELRLLRTLAQSPGRVFSR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            Q+   IY      V +  V+SHI  LR+KL       +P++S   +GY
Sbjct: 173 DQLLDRIYS-DHRVVTDRTVDSHIRNLRRKLEQACPAENPIESLYGVGY 220


>gi|325660888|ref|ZP_08149516.1| hypothetical protein HMPREF0490_00248 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472962|gb|EGC76172.1| hypothetical protein HMPREF0490_00248 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 228

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 11/146 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I R +   P+I  +   SLQ  +   D G DD + KP    E+LAR+ A+ RR  + 
Sbjct: 63  LSAIRRKNIFTPVILATAMDSLQDKISGLDCGADDYLTKPFDAEELLARIRALARRPAL- 121

Query: 123 NNRAETGPIRVFSD-GRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +  PI  + D   DPE        +   L ++E  ++EYL+ N+ + + ++ I S 
Sbjct: 122 ---FKESPILSYGDLCFDPEKLELSTNEKTLSLSKKEGSLIEYLIKNKEQNLRRSLILSY 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202
           ++G  D  VEE  ++++I  LR++LR
Sbjct: 179 VWG-ADAEVEEGNLDNYIYFLRRRLR 203


>gi|241206417|ref|YP_002977513.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860307|gb|ACS57974.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 246

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 21/230 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  + L    G       S    + +    + D+  ++A L   GE   
Sbjct: 15  ILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAML--PGEDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +RA   VP++ ++   +LQ  +D     + G DD V KP + RE+LAR+ +I RR
Sbjct: 73  SICRRLRAACSVPILMLT---ALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRR 129

Query: 119 LKVSNNRAET-GPIRVFSDGR-DP------EVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              ++++ E  GP+ +FS  R DP      +  G    +   E  IL     N  K + +
Sbjct: 130 ASYAHHQEEALGPM-MFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTR 188

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
            Q+ S  +      VE + +++HIS++R+K+   L  DP  + + R  GY
Sbjct: 189 EQLLSMTHAGSAGPVERS-IDAHISRVRQKIEPNLK-DPTFIKTVRLGGY 236


>gi|153940477|ref|YP_001389642.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|170757816|ref|YP_001779924.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|152936373|gb|ABS41871.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169123028|gb|ACA46864.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 288

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR HS+VP+I IS   S    +   ++G DD + KP  +  +LA++  + RR+  S  + 
Sbjct: 123 IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 182

Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +T     G + ++++    E +G    L + E  +L YL  N  K V++  +   ++   
Sbjct: 183 DTDFFKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLFKNINKIVSRDTLLEILWSDT 242

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  +++N +  ++++LRK+L      + +++KR  GY +
Sbjct: 243 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 280


>gi|53804012|ref|YP_114372.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757773|gb|AAU92064.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 221

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 8/138 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  + +P++ ++   SL   +   +SG DD + KP    E++AR+ A+ RR   +  RAE
Sbjct: 70  RRGAGIPVLILTARDSLSDRVLGLNSGADDYLVKPFELDELVARIHALVRR---AAGRAE 126

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                GP+R+    R+  ++GE   L  RE  +L  L+   G  +++T++   +YG   E
Sbjct: 127 PVVEHGPLRLLPVKRECWLRGEPVELSAREFDLLYALLEKPGAVLSRTRLEERVYGWGQE 186

Query: 184 AVEENVVESHISKLRKKL 201
            V  N ++ HI  LRKKL
Sbjct: 187 VV-SNAIDVHIHHLRKKL 203


>gi|16130921|ref|NP_417497.1| quorum sensing DNA-binding response regulator in two-component
           regulatory system with QseC [Escherichia coli str. K-12
           substr. MG1655]
 gi|89109795|ref|AP_003575.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K-12 substr. W3110]
 gi|170082568|ref|YP_001731888.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K-12 substr. DH10B]
 gi|238902138|ref|YP_002927934.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli BW2952]
 gi|1723888|sp|P52076|QSEB_ECOLI RecName: Full=Transcriptional regulatory protein qseB
 gi|882555|gb|AAA69193.1| ORF_o219 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789402|gb|AAC76061.1| quorum sensing DNA-binding response regulator in two-component
           regulatory system with QseC [Escherichia coli str. K-12
           substr. MG1655]
 gi|85675828|dbj|BAE77081.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K12 substr. W3110]
 gi|169890403|gb|ACB04110.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K-12 substr. DH10B]
 gi|238860870|gb|ACR62868.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli BW2952]
 gi|260447939|gb|ACX38361.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|315137618|dbj|BAJ44777.1| DNA-binding transcriptional regulator QseB [Escherichia coli DH1]
          Length = 219

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ +++  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|134287719|ref|YP_001109885.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134132369|gb|ABO60104.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 221

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 18/172 (10%)

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  LE+   IRA    +PL+ I+    L   L   D G DD V+KP    E+LAR+ A+
Sbjct: 56  GKDGLEVLASIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAV 115

Query: 116 YRRLK------VSNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV 168
            RR        +SN      P    +   D P+VQ     L  RE  +L+ L+   G  +
Sbjct: 116 LRRKGGTAAPVLSNGVVTLDPATKEACANDGPQVQ-----LSNREFSLLQALLVRPGAIL 170

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++++   IYG + E VE N VE  I  LR+    KLG + + + R +G+ +
Sbjct: 171 SRSELEDRIYG-WGEEVESNAVEYLIHALRR----KLGGEVIKNVRGVGWMV 217


>gi|224282738|ref|ZP_03646060.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
 gi|310287197|ref|YP_003938455.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313139897|ref|ZP_07802090.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|309251133|gb|ADO52881.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313132407|gb|EFR50024.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 245

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 20/143 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147
           G DD V KP    E++AR+ AI RR   +  + E  PI       +  D  D    G   
Sbjct: 100 GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVSRAGHAI 156

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E ++L YLM N G+ ++K QI   ++  +D   +  +VES+IS LRKK+   +  
Sbjct: 157 DLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDGIMVT 215

Query: 208 DP----------VDSKRFLGYSI 220
           D           +++KR +GY I
Sbjct: 216 DDNGEQHKVTPLIETKRGIGYMI 238


>gi|108763038|ref|YP_633464.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108466918|gb|ABF92103.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 226

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 7/179 (3%)

Query: 45  DVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           + SA +A L+     G   LE+ + IRA S++P+I ++        +   + G DD + K
Sbjct: 43  EASAFDAVLLDVMMPGMDGLEVCKRIRAKSRIPVIMLTAKGDETDRVVGLELGADDYLPK 102

Query: 102 PIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
           P   RE+LAR+ A+ RR + S   +R E+G + +   GR+  V+     L   E  +L  
Sbjct: 103 PFSPRELLARLRAVLRRSQPSAVADRLESGGVSIDVAGREVRVEERAVELTGLEFDLLVA 162

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L+   G+ V +  +     G  D  V E  V+ HIS LR+KL   +G   + + R +GY
Sbjct: 163 LVRRAGRVVPRDALLGE-AGRSDTVVGERTVDVHISHLRQKL-GDVGTRLIKTVRGVGY 219


>gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 240

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 11/171 (6%)

Query: 38  LQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           + +S R D+  ++  + G  G  V+   R+  +    P++ ++   + +  +     G D
Sbjct: 50  MAASFRPDLLVLDVMMPGLDGFGVVR--RLRESGRHTPVLFLTARDAAEDKVSGLTLGGD 107

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLP 150
           D V KP    E+LAR+ A+ RR       AE+ P   F+D   D E       GEV  L 
Sbjct: 108 DYVTKPFSLDEVLARIRAVLRRSTGPQRPAES-PRLSFADIELDEESHEVVKAGEVVSLS 166

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E ++L YLMAN G+ ++K QI   ++  +D   + NVVES+IS LR+K+
Sbjct: 167 PTEFKLLRYLMANAGRVLSKAQILDHVWN-YDFNGDANVVESYISYLRRKV 216


>gi|197301304|ref|ZP_03166389.1| hypothetical protein RUMLAC_00035 [Ruminococcus lactaris ATCC
           29176]
 gi|197299622|gb|EDY34137.1| hypothetical protein RUMLAC_00035 [Ruminococcus lactaris ATCC
           29176]
          Length = 220

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD    ++ + +HI  +R K  +   + P+ +   +GY
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216


>gi|119944977|ref|YP_942657.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
 gi|119863581|gb|ABM03058.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
          Length = 218

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 6/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L ++ +A  ++P++ ++    +   +   D G DD + KP   +E+LAR+  I RR+   
Sbjct: 63  LSQVRKAGHKLPILILTARDDIDDRVKGLDGGADDYLLKPFALQELLARLRVIVRRVSGY 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + ++ E   + +       E  G    L   E ++L  L+   G+ ++K  +   +YG +
Sbjct: 123 AESKIELHGLVISLAKNTVEYHGAAIKLTNTEFKLLTTLVTKAGRVLSKEYLQQTLYG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   +N +E +I  LRKK+ N+L    + + R +GY I+
Sbjct: 182 DEMASDNAIEVYIHNLRKKINNQL----IKNIRGVGYIIE 217


>gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 229

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 4/140 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA SQ+P+I ++        +     G DD + KP   RE++AR+    RR +      
Sbjct: 70  IRAFSQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVALRRTQGIQQVD 129

Query: 127 ETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +TG     +R+   GR   V G+   L ++E  +L +L+ +RG+   +  +   ++G+  
Sbjct: 130 DTGYRFNELRIQPSGRKVFVNGQEISLTKKEYDLLVFLLEHRGRVFTREHLHDRLWGMDT 189

Query: 183 EAVEENVVESHISKLRKKLR 202
           +      V++HI  LR KL+
Sbjct: 190 QQGTLRTVDTHIKTLRLKLK 209


>gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 227

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 9/142 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P++ ++        +     G DD V KP   +E+LARV A+ RR    +N+A
Sbjct: 70  IREKYMMPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEALLRR----SNQA 125

Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    I V    R   V GE   L RRE  +L +LM + GK  ++ Q+   I+GL 
Sbjct: 126 FFDVVSHSEITVQKSARQVLVGGERINLARREYDLLLFLMEHEGKVFSREQLHDVIWGLD 185

Query: 182 DEAVEENVVESHISKLRKKLRN 203
            E      V++H+  LR KL++
Sbjct: 186 TEKGSYRTVDTHVKTLRFKLKD 207


>gi|256850843|ref|ZP_05556232.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661054|ref|ZP_05861968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934486|ref|ZP_06339741.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|297205717|ref|ZP_06923112.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615905|gb|EEU21093.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547991|gb|EEX23967.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301433|gb|EFA93722.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|297148843|gb|EFH29141.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 240

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 11/151 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+ 
Sbjct: 61  LEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVN 120

Query: 120 ---KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              KVS+N A    +  F+D       R      +   L +RE  +L  L+ N+   V++
Sbjct: 121 IEKKVSSNAAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            Q+ + I+G  D  +E NVVE ++  LR K+
Sbjct: 181 EQLLNKIWG-PDSNIETNVVEVYVRYLRNKI 210


>gi|219523854|gb|ACL14890.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
          Length = 224

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   +++      P 
Sbjct: 74  LPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPF 133

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 134 QVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 192

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + +LRKK++ +   D + + R  GY
Sbjct: 193 VLMGRLRKKIQAQYPHDVITTVRGQGY 219


>gi|163734401|ref|ZP_02141841.1| probable two-component response regulator transcription regulator
           protein [Roseobacter litoralis Och 149]
 gi|161392409|gb|EDQ16738.1| probable two-component response regulator transcription regulator
           protein [Roseobacter litoralis Och 149]
          Length = 223

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 108/209 (51%), Gaps = 15/209 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            +LI+D A V D     F   G++ EG+   ++   E+ L+ +A+ +   +   L+  G 
Sbjct: 3   ILLIEDEARVAD-----FVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGI 57

Query: 59  KVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +   + R +RA  S+ P++ ++     +  ++    G DD + KP    E++AR+ A++R
Sbjct: 58  QGQGVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHR 117

Query: 118 RLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R       VS+     G I       +  V+ +   L ++ER +L+ L+ + G+ +++ +
Sbjct: 118 RATGYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRER 177

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I + ++GL  + +  NVV+ ++ +LR+KL
Sbjct: 178 ILNTVWGLNADPL-TNVVDVYVGRLRRKL 205


>gi|329954397|ref|ZP_08295489.1| putative transcriptional regulatory protein ResD [Bacteroides
           clarus YIT 12056]
 gi|328527665|gb|EGF54658.1| putative transcriptional regulatory protein ResD [Bacteroides
           clarus YIT 12056]
          Length = 229

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 94/195 (48%), Gaps = 24/195 (12%)

Query: 21  DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVP 74
           ++G  ++  NS E       + + D+SA    L+        G K+  + +  +  ++VP
Sbjct: 25  NEGYEVDTANSAE------EALKMDISAYNLLLLDVMMGEISGFKMASMLKKEKKTAKVP 78

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134
           +I I+   +   T+  F+ G DD ++KP   RE+ ARV A+ RR        E  P ++ 
Sbjct: 79  IIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR--TQQAETERAPEQIV 136

Query: 135 SDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VE 186
                     +   + GE  PL ++E  IL  L+ N+G+  ++  I S I+   DE  V 
Sbjct: 137 YKSLVLDIIKKRVSIDGEEAPLTKKEFEILLLLLQNKGRVFSREDILSRIWS--DEVYVL 194

Query: 187 ENVVESHISKLRKKL 201
           +  ++ +I++LRKK+
Sbjct: 195 DRTIDVNITRLRKKI 209


>gi|283798726|ref|ZP_06347879.1| DNA-binding response regulator DltR [Clostridium sp. M62/1]
 gi|291073407|gb|EFE10771.1| DNA-binding response regulator DltR [Clostridium sp. M62/1]
 gi|295090823|emb|CBK76930.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
 gi|295116054|emb|CBL36901.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 224

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D A +     A+   +  S++     +   E+L+S   + V  I   ++ K + +
Sbjct: 3   LLLAEDEAALSKALTAILERNNYSVDSVCDGQAALEYLESDNYDGV--ILDIMMPKIDGI 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L ++ +  S VP++ ++    +   +   D+G +D + KP H RE+LAR+ A+ R   
Sbjct: 61  TVLRKLRQKGSLVPVLLLTAKSEVDDKVLGLDAGANDYLTKPFHSRELLARIRAMTRTQT 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +++ + G + +     +       + L  +E +++E LM+N    ++  +    I+G
Sbjct: 121 AHPDSQLQMGNVVLNRASFELSTPSGSYRLANKEFQMMEMLMSNPKCLISSERFMEKIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E NVV  +IS LRKKL        + + R  GYS++
Sbjct: 181 -YDSEAEINVVWVYISYLRKKLAALHATIHIKASRNAGYSLE 221


>gi|228938514|ref|ZP_04101122.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228821112|gb|EEM67129.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 203

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 43  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 102

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 103 KQEQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 162

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 163 G-YDYAGSTRTVDTHVKTMRLKL 184


>gi|240146411|ref|ZP_04745012.1| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
 gi|257201459|gb|EEU99743.1| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
 gi|291526354|emb|CBK91941.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291526803|emb|CBK92389.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 220

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD    ++ + +HI  +R K  +   + P+ +   +GY
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216


>gi|217979526|ref|YP_002363673.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217504902|gb|ACK52311.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 236

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+ R  + +P++ +S   ++   +    +G DD + KP    E+ ARV A+ RR + + +
Sbjct: 77  RLRRDDAHLPVLFVSGLTAVDERIRALKAGGDDYLTKPFALGELAARVDALLRRSQSAQD 136

Query: 125 RA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            A   GP+ +    R  +       L   E ++LEY+M + G+ +++  +   ++G +  
Sbjct: 137 TALVVGPLMLDRISRMAQRGARAIALLPAEFKLLEYMMRHAGQTLSRAMLLEDVWG-YRS 195

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
               N+++ HI KLR+K+ +  G  P + S R  G+++ W
Sbjct: 196 LPNTNLIDVHIGKLRRKI-DAAGETPLIHSVRGAGFTLQW 234


>gi|126700609|ref|YP_001089506.1| two-component system esponse regulator [Clostridium difficile 630]
 gi|254976534|ref|ZP_05273006.1| two-component system esponse regulator [Clostridium difficile
           QCD-66c26]
 gi|255093919|ref|ZP_05323397.1| two-component system esponse regulator [Clostridium difficile CIP
           107932]
 gi|255102100|ref|ZP_05331077.1| two-component system esponse regulator [Clostridium difficile
           QCD-63q42]
 gi|255307969|ref|ZP_05352140.1| two-component system esponse regulator [Clostridium difficile ATCC
           43255]
 gi|255315671|ref|ZP_05357254.1| two-component system esponse regulator [Clostridium difficile
           QCD-76w55]
 gi|255518332|ref|ZP_05386008.1| two-component system esponse regulator [Clostridium difficile
           QCD-97b34]
 gi|255651449|ref|ZP_05398351.1| two-component system esponse regulator [Clostridium difficile
           QCD-37x79]
 gi|260684509|ref|YP_003215794.1| two-component system esponse regulator [Clostridium difficile
           CD196]
 gi|260688167|ref|YP_003219301.1| two-component system esponse regulator [Clostridium difficile
           R20291]
 gi|306521274|ref|ZP_07407621.1| two-component system esponse regulator [Clostridium difficile
           QCD-32g58]
 gi|115252046|emb|CAJ69882.1| Two-component response regulator [Clostridium difficile]
 gi|260210672|emb|CBA65415.1| two-component system esponse regulator [Clostridium difficile
           CD196]
 gi|260214184|emb|CBE06427.1| two-component system esponse regulator [Clostridium difficile
           R20291]
          Length = 230

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S +P+I IS        +   +SG DD + KP ++  ++A++ +  RR+     
Sbjct: 66  RCIRQQSNLPIIFISARDGNVDQIRALESGADDYITKPFYYDVVMAKIKSHIRRVYGEYS 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K+     E   ++ + +  + E+ GE   + ++E  ++E L+    K V++  +   I+
Sbjct: 126 PKIDERIVELDGLKFYPERLELELNGENLIITKKEGILIECLIKRYPKVVSRDYLLEKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
               E VEEN +  ++S++RK+   +LG D  V + R LGY ++ N
Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRFE-ELGIDNAVQTVRGLGYKLNKN 229


>gi|89093375|ref|ZP_01166324.1| DNA-binding response regulator BaeS [Oceanospirillum sp. MED92]
 gi|89082354|gb|EAR61577.1| DNA-binding response regulator BaeS [Oceanospirillum sp. MED92]
          Length = 229

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 6/178 (3%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89
           N LE   W++   + + + I   L+  G+  +E+ + IR  S  P+I  +        L 
Sbjct: 36  NGLEVTGWVK---QHNPAVILLDLMLPGKDGMEICKEIRTFSNTPIIMTTARVEEIDRLL 92

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETG-PIRVFSDGRDPEVQGEVF 147
             + G DD V KP   RE++ARV A  RR+   S N  +T  PI +  +     + GE  
Sbjct: 93  GLELGADDYVCKPYSPREVVARVKATLRRIAAFSGNTPKTADPISLDEERFLAFIGGEQL 152

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
            L   E R+++  + N+G+  +++Q+    Y      V +  V++HI  LRKK++  L
Sbjct: 153 ELTPVEFRMMQTFLDNQGRVFSRSQLMDKAY-TDQRVVSDRTVDTHIKNLRKKIQPHL 209


>gi|254819560|ref|ZP_05224561.1| two component system response regulator [Mycobacterium
           intracellulare ATCC 13950]
          Length = 266

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 15/194 (7%)

Query: 39  QSSAREDVSAIEAFLIG------------KGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86
            + AR D   +EA L G             G     L  +IR    + ++ I+    L  
Sbjct: 71  HTDARCDGGGLEAVLDGMRPDLVVLDVMLPGRDGFALIDVIREWGDIGIVLITARDGLPD 130

Query: 87  TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV 146
            L   D G DD V KP    E+++RV A+ RR        + G + +          G  
Sbjct: 131 RLRGLDGGADDYVIKPFELAELVSRVGAVLRRRGRLPQVVQVGDVALDLGAGVAARDGHR 190

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L   E R+L + +  RG+ V+  QI + ++G   +A + N+V+ H+S LR+KL    G
Sbjct: 191 LDLTATELRVLTFFVEQRGRIVSAAQILNGVWGY--DAYDPNLVQVHVSGLRRKLEAH-G 247

Query: 207 FDPVDSKRFLGYSI 220
              + + R +GY +
Sbjct: 248 PRILHTVRGIGYRL 261


>gi|167031315|ref|YP_001666546.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166857803|gb|ABY96210.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 240

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 95/188 (50%), Gaps = 14/188 (7%)

Query: 28  GFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           G+N L   + E+  +  AR+ V  +   L+  GE  L L R ++A   + +I +S   S 
Sbjct: 26  GYNVLAAADGEQMREQLARQKVELVVLDLMLPGEDGLSLCRQLQATPGLAVIMLSAKGST 85

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI---RVFSDGRDPE 141
              +   + G DD + KP   RE++AR+ A+ RR +  + +AE   +   ++F+  R   
Sbjct: 86  LDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQRLDAQAEEPAVMDAQLFAGFRLEH 145

Query: 142 VQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
           V+       GE   LPR + R+L  L+    + V++ Q+  + +G  D   ++  V+  +
Sbjct: 146 VKRLLTRPDGETLTLPRSDYRVLRELLEANNRVVSRDQLTRSAFG-RDHLPDDRSVDMCV 204

Query: 195 SKLRKKLR 202
           S+LR++LR
Sbjct: 205 SRLRQQLR 212


>gi|307709217|ref|ZP_07645676.1| response regulator [Streptococcus mitis SK564]
 gi|307620163|gb|EFN99280.1| response regulator [Streptococcus mitis SK564]
          Length = 224

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G I +       +V+     L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDILINLSTNTVKVEDTPVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  ++G FD     +VVE ++SK+RKKL+     + 
Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Nitrospira defluvii]
 gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB
           [Candidatus Nitrospira defluvii]
          Length = 238

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 88/168 (52%), Gaps = 7/168 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +V +  R+ +  + +P++ ++       T+   + G DD V KP   + ++ARV A+ 
Sbjct: 67  GLEVCKRIRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALL 126

Query: 117 RRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RRL+ + N  +T    GP+ V     +  + G+   L  +E  +LE+L+ N G+ + +  
Sbjct: 127 RRLERNANSPQTQYHYGPLTVDLSRHEVRLDGQEVALTAKEFGLLEHLLRNIGRVLTRDV 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + SA++G +D       V+ H+ +L++KL   L  D + S + LGY +
Sbjct: 187 LLSAVWG-YDYYGTTRTVDVHVRRLKQKL--PLLDDAIISIKSLGYKL 231


>gi|226315382|ref|YP_002775278.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098332|dbj|BAH46774.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 233

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 73/152 (48%), Gaps = 16/152 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R+IR    +P+I +S   S    +     G DD + KP +  E++ARV A  RR K 
Sbjct: 64  EVTRLIREQHNMPIIFLSAKTSDLDKISGLVMGADDYMTKPFNPMELVARVNAQLRRFKQ 123

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKT 171
                    SN   E G + ++ + R   + GE   L  +E  IL YL+A   K+V +  
Sbjct: 124 LNQPAVAVASNKVLEAGGLVIYPEERTVSLYGETIELTPKEFDIL-YLLARYPKKVFSAD 182

Query: 172 QIFSAIYGLFDEAVEE--NVVESHISKLRKKL 201
            IF  ++G   EA  E  N V  HI  LRKKL
Sbjct: 183 NIFEMVWG---EAYYEGSNTVMVHIRTLRKKL 211


>gi|125717796|ref|YP_001034929.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|125497713|gb|ABN44379.1| Two-component response transcriptional regulator (CheY-like
           receiver domain and a winged-helix DNA-binding domains),
           putative [Streptococcus sanguinis SK36]
 gi|324990861|gb|EGC22796.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|324993111|gb|EGC25031.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324995585|gb|EGC27497.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|325687908|gb|EGD29928.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
 gi|327461377|gb|EGF07708.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327469539|gb|EGF15008.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
 gi|327489235|gb|EGF21028.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|328946064|gb|EGG40210.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
 gi|332361465|gb|EGJ39269.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
          Length = 224

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V          G+   L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 TVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTVSVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+       + + R +GY
Sbjct: 192 VYVSKIRKKLKGTAFAKNLHTLRSVGY 218


>gi|15900691|ref|NP_345295.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           TIGR4]
 gi|111658151|ref|ZP_01408848.1| hypothetical protein SpneT_02000676 [Streptococcus pneumoniae
           TIGR4]
 gi|148985849|ref|ZP_01818943.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP3-BS71]
 gi|148990411|ref|ZP_01821577.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992467|ref|ZP_01822162.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997122|ref|ZP_01824776.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003430|ref|ZP_01828319.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007683|ref|ZP_01831300.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP18-BS74]
 gi|149010570|ref|ZP_01831941.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP19-BS75]
 gi|149021667|ref|ZP_01835698.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP23-BS72]
 gi|168484457|ref|ZP_02709409.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC1873-00]
 gi|168486188|ref|ZP_02710696.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC1087-00]
 gi|168489819|ref|ZP_02714018.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           SP195]
 gi|168490895|ref|ZP_02715038.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC0288-04]
 gi|168492956|ref|ZP_02717099.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC3059-06]
 gi|168575461|ref|ZP_02721397.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           MLV-016]
 gi|169833866|ref|YP_001694261.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           Hungary19A-6]
 gi|194398608|ref|YP_002037443.1| CiaR response regulator TCS05 [Streptococcus pneumoniae G54]
 gi|225854314|ref|YP_002735826.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           JJA]
 gi|225856472|ref|YP_002737983.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           P1031]
 gi|225858608|ref|YP_002740118.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           70585]
 gi|225861298|ref|YP_002742807.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237649444|ref|ZP_04523696.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CCRI 1974]
 gi|237821004|ref|ZP_04596849.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|298230630|ref|ZP_06964311.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255363|ref|ZP_06978949.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|303255789|ref|ZP_07341830.1| CiaR response regulator TCS05 [Streptococcus pneumoniae BS455]
 gi|303260265|ref|ZP_07346236.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           SP-BS293]
 gi|303261471|ref|ZP_07347419.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264139|ref|ZP_07350060.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           BS397]
 gi|303266251|ref|ZP_07352142.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           BS457]
 gi|303268689|ref|ZP_07354479.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           BS458]
 gi|307067403|ref|YP_003876369.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307127650|ref|YP_003879681.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           670-6B]
 gi|61220925|sp|P0A4H7|CIAR_STRPN RecName: Full=Transcriptional regulatory protein CiaR
 gi|61220927|sp|P0A4H8|CIAR_STRR6 RecName: Full=Transcriptional regulatory protein CiaR
 gi|495276|emb|CAA54465.1| response regulator [Streptococcus pneumoniae]
 gi|14972274|gb|AAK74935.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           TIGR4]
 gi|147756822|gb|EDK63862.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758613|gb|EDK65611.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760838|gb|EDK67809.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP18-BS74]
 gi|147765051|gb|EDK71980.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP19-BS75]
 gi|147921995|gb|EDK73119.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP3-BS71]
 gi|147924316|gb|EDK75409.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928784|gb|EDK79797.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP9-BS68]
 gi|147930128|gb|EDK81114.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996368|gb|ACA36980.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172042318|gb|EDT50364.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC1873-00]
 gi|183570751|gb|EDT91279.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571796|gb|EDT92324.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           SP195]
 gi|183574782|gb|EDT95310.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC0288-04]
 gi|183577079|gb|EDT97607.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC3059-06]
 gi|183578577|gb|EDT99105.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           MLV-016]
 gi|194358275|gb|ACF56723.1| CiaR response regulator TCS05 [Streptococcus pneumoniae G54]
 gi|225720388|gb|ACO16242.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           70585]
 gi|225724185|gb|ACO20038.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           JJA]
 gi|225725849|gb|ACO21701.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           P1031]
 gi|225726696|gb|ACO22547.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|291195955|emb|CBE70267.1| CiaR protein [Streptococcus pneumoniae]
 gi|291195959|emb|CBE70270.1| CiaR protein [Streptococcus pneumoniae]
 gi|301793955|emb|CBW36351.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301799813|emb|CBW32382.1| response regulator protein [Streptococcus pneumoniae OXC141]
 gi|301801642|emb|CBW34340.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302597173|gb|EFL64278.1| CiaR response regulator TCS05 [Streptococcus pneumoniae BS455]
 gi|302637605|gb|EFL68092.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638589|gb|EFL69053.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           SP-BS293]
 gi|302641749|gb|EFL72106.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           BS458]
 gi|302644181|gb|EFL74437.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           BS457]
 gi|302646544|gb|EFL76770.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           BS397]
 gi|306408940|gb|ADM84367.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306484712|gb|ADM91581.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           670-6B]
 gi|327390155|gb|EGE88498.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332073074|gb|EGI83553.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332077215|gb|EGI87677.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332202662|gb|EGJ16731.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332203954|gb|EGJ18021.1| response regulator [Streptococcus pneumoniae GA47368]
 gi|332204809|gb|EGJ18874.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 224

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G I V       +V+     L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  ++G FD     +VVE ++SK+RKKL+     + 
Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|294651275|ref|ZP_06728601.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822841|gb|EFF81718.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 225

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 12/167 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +++ + IR  + +P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  MQILKQIRQRTAMPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALLRRGN 120

Query: 119 LKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             ++ N+  T     G + +  +      +GE   L  RE  IL  ++ +  K  +K  +
Sbjct: 121 TVMNQNKGNTQLLKSGDLILDVEQHSATFKGEQIELSNREWAILIPMVTHPNKIFSKANL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +Y  FD  V  N +E ++  LR     KLG D + + R LGY +
Sbjct: 181 EDKLYD-FDSEVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 222


>gi|254555419|ref|YP_003061836.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308179421|ref|YP_003923549.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254044346|gb|ACT61139.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308044912|gb|ADN97455.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 234

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 28/227 (12%)

Query: 16  IALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV------------- 60
           I +  D+G SL G+    L+FE++    A   ++A+E +   + E +             
Sbjct: 5   ILIVEDEG-SLSGYLTKELQFEDFNVLVAANGLAAMETYQAHQNELLLILLDWMLPKLDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR H QVP+I ++    +   +   D+G DD + KP    E+LAR+  I RR++
Sbjct: 64  MEVLRRIRKHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRVIQRRIE 123

Query: 121 VSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              N+ E   +    D        R    Q EV  L  RE  +L++ +A+  +   +  +
Sbjct: 124 ---NQVEPNQVYQLDDIQLDTKAHRVTNGQEEV-TLTHREYDLLQFFLAHPDEVFTRDDL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G  D   ++NVV+ ++  LR K+        + + R +GY +
Sbjct: 180 LDQVWGA-DFLGQQNVVDVYVGYLRNKITTTGASPLIQTVRGVGYKL 225


>gi|225377534|ref|ZP_03754755.1| hypothetical protein ROSEINA2194_03184 [Roseburia inulinivorans DSM
           16841]
 gi|225210611|gb|EEG92965.1| hypothetical protein ROSEINA2194_03184 [Roseburia inulinivorans DSM
           16841]
          Length = 220

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD    ++ + +HI  +R K  +   + P+ +   +GY
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216


>gi|184155774|ref|YP_001844114.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|227515634|ref|ZP_03945683.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|260663510|ref|ZP_05864400.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183227118|dbj|BAG27634.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|227086064|gb|EEI21376.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|260552051|gb|EEX25104.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 228

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR+ 
Sbjct: 61  LEVARRVREVKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRIS 120

Query: 121 V---SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   +N+  +T      + +  + R      EV  L +RE  +L  LM N    +++ ++
Sbjct: 121 IEGDANSVHQTTVTYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKEL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 181 LSKVWG-YDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|168186215|ref|ZP_02620850.1| DNA-binding response regulator [Clostridium botulinum C str.
           Eklund]
 gi|169295668|gb|EDS77801.1| DNA-binding response regulator [Clostridium botulinum C str.
           Eklund]
          Length = 223

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 10/164 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP +   +LAR+A+I RR    
Sbjct: 63  ICREVRKFSNVPIIVVTSRDSDMDEIMSMNLGADDFVTKPYNTEILLARIASILRRTYGK 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY- 178
            V  +      + +         + ++  L + E +IL +LM N+GK V++  +   ++ 
Sbjct: 123 DVPQDVLSYKGLNLNLSSGSISYEDKILELTKNELKILSFLMKNQGKIVSRESLMDYLWS 182

Query: 179 -GLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             LF   +++N +  ++++LRKKL + +G   V +++R LGY I
Sbjct: 183 SNLF---IDDNTLSVNVTRLRKKLED-IGLKSVIETRRGLGYII 222


>gi|186475948|ref|YP_001857418.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192407|gb|ACC70372.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 228

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 16/157 (10%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETG 129
           +++P++ ++   +    +   D+G DD + KP    E+++R  A+ RR   S  R +E  
Sbjct: 80  NEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRR---SQGRGSELI 136

Query: 130 PIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             R  S   DP  Q     G   PL  RE  +L +L+ + G    + +I  ++YG + E 
Sbjct: 137 EWRGLS--VDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG-WHEE 193

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           VE N +E H+S LRK    KLG D + + R  GY +D
Sbjct: 194 VESNAIEVHVSNLRK----KLGGDVIRTVRGFGYVVD 226


>gi|86747907|ref|YP_484403.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570935|gb|ABD05492.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 233

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA +   Q+P+I ++        +    +G DD + KP    E+LARV  + R
Sbjct: 62  IELCRRLRARTDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   +  R  T    G + +  D R     G    L   E R+LE+ + + G+  ++ Q+
Sbjct: 122 R--AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 180 LDGVWG-RDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|66047192|ref|YP_237033.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257899|gb|AAY38995.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330973017|gb|EGH73083.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 223

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 79/149 (53%), Gaps = 11/149 (7%)

Query: 63  LPRI--------IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           LPR+        +RA S+ +P++ ++    ++  +   + G DD + KP    E+ ARV 
Sbjct: 54  LPRMDGFEVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVK 113

Query: 114 AIYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR  +   R +   +  +  D R   +  E+  L  RE+ +LE L+A  G+ ++K Q
Sbjct: 114 ALLRRSVLGGERQQCCGVLAYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + + ++GL DE    + +E ++ +LRKKL
Sbjct: 174 LAAQVFGL-DEEASPDAIEIYVHRLRKKL 201


>gi|89096819|ref|ZP_01169710.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088199|gb|EAR67309.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 236

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 21/210 (10%)

Query: 27  EGFNSLEF----EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           EGF+S+      EE L+  +R  +  +   ++  G+   ++   IR  S   ++ ++   
Sbjct: 26  EGFSSIHTAYTAEEALECVSRHPIDIVVLDVMLPGQSGFDICPKIREISDAYILFLTARV 85

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFS 135
           S    L  F  G DD + KP +  EI AR+ A  RR       LK +  + + G   +  
Sbjct: 86  SDLDVLTGFAIGGDDYITKPFNPLEIAARIKARLRRNQAPSPALKEAGRKHDFGRFILDE 145

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
           +  D  V+G+    P +   +L+YL  +    ++KTQ+  A++G FD  V++N V  HI 
Sbjct: 146 EAGDLIVEGKAVQTPAQVFLLLQYLCQHPNTVISKTQMLEAVWG-FDSFVDDNTVTVHIR 204

Query: 196 KLRKKLRNKLGFDP-----VDSKRFLGYSI 220
           ++R+++      DP     + + R LGY +
Sbjct: 205 RIRERIEK----DPSHPELLVTVRGLGYKL 230


>gi|307706360|ref|ZP_07643172.1| response regulator [Streptococcus mitis SK321]
 gi|307708503|ref|ZP_07644968.1| transcriptional regulatory protein CiaR [Streptococcus mitis NCTC
           12261]
 gi|307615419|gb|EFN94627.1| transcriptional regulatory protein CiaR [Streptococcus mitis NCTC
           12261]
 gi|307618278|gb|EFN97433.1| response regulator [Streptococcus mitis SK321]
          Length = 224

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G I V       +V+     L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  ++G FD     +VVE ++SK+RKKL+     + 
Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|304439740|ref|ZP_07399638.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371727|gb|EFM25335.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 225

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 5/157 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLKVSNNR 125
           I+    +P++ +S        L  F+ G+DD V KP   +E++AR+  I  R  K+++NR
Sbjct: 67  IKKTKNIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVTRNKKLNDNR 126

Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E   +++  DGR   V GE   L  +E  +L YL  N+   +++ Q+ + ++G +D  
Sbjct: 127 VMEFEGLKIDLDGRSVSVDGERVDLTPKEYELLTYLAKNKNIALSREQLLNQVWG-YDFY 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  V++HI  LR  +++   F  + + R +GY  +
Sbjct: 186 GDDRTVDTHIKMLRNSIKHYRKF--IVTVRGVGYKFE 220


>gi|317052735|ref|YP_004113851.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316947819|gb|ADU67295.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 224

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 5/148 (3%)

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE  RI++     S++P+I IS     Q  +     G DD + KP   + + A+V A+ R
Sbjct: 62  LEFLRILKNSVERSEIPVIIISAKSGEQDIVTGLSLGADDYITKPFSMKVLKAKVDAVLR 121

Query: 118 RLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    +NR    G I +  +     V G    L  +E  +L   +    K   + Q+ S+
Sbjct: 122 RALHHDNRTVAYGSISIDMETHKAYVDGNEVVLTMKEFELLHLFLKRPKKVFHRNQLLSS 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           I+G +D  V    V++HIS LRKKL +K
Sbjct: 182 IWG-YDSEVYTRTVDAHISSLRKKLGDK 208


>gi|221231598|ref|YP_002510750.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|220674058|emb|CAR68571.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
          Length = 224

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G I V       +V+     L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  ++G FD     +VVE ++SK+RKKL+     + 
Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|156743599|ref|YP_001433728.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156234927|gb|ABU59710.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 226

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 23/171 (13%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R IR  S VP+I ++    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DICRQIRRMSDVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRNS 120

Query: 119 ------LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                  ++S       PI    +F DGR          L   E R+L YLM N G+ ++
Sbjct: 121 DMVNPVTRISQGPLTLDPIEHTVLFEDGRH-------VVLTPIEFRLLYYLMQNSGRVLS 173

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
             QI + ++G +D   E N+V  ++ +LR K+ +  G  P  + + R LGY
Sbjct: 174 PDQILNKVWG-YDYEGESNLVAVYVRRLRAKIESD-GESPRHIITVRNLGY 222


>gi|322376362|ref|ZP_08050855.1| DNA-binding response regulator CiaR [Streptococcus sp. M334]
 gi|321282169|gb|EFX59176.1| DNA-binding response regulator CiaR [Streptococcus sp. M334]
          Length = 224

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G I V       +V+     L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDNPVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  ++G FD     +VVE ++SK+RKKL+     + 
Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|292493049|ref|YP_003528488.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291581644|gb|ADE16101.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 219

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 7/148 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130
           +P++ ++   +    L+   +G DD ++KP H  E+L RV A+ RR    V++ R E G 
Sbjct: 73  LPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSHGAVNSPRLEVGG 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +  D +      + + L R E R+L   M + GK +++ Q+   +Y    E  + NV+
Sbjct: 133 LALDEDRQSIWRGDQEYELTRGEFRLLRCFMLHPGKLLSRMQLNEHLYDGESER-DSNVL 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E HI++LR+    KLG   ++++R  GY
Sbjct: 192 EVHINRLRR----KLGHQVIETRRGQGY 215


>gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 229

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 28/224 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+ A      V++ G  +LE  E+ ++ A  D+  ++  L G      ++ + +R 
Sbjct: 21  LRKEGFTA-----AVAVTGQQALE--EFDRNGA--DIVLLDLMLPGMSGT--DVCKQLRQ 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127
            S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR     +  E  
Sbjct: 70  RSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEPGSDGELA 129

Query: 128 -----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 GP+R+  +     V G    LP +E  +LEYL+ N G+ + + Q+   ++G  D
Sbjct: 130 PLVLSAGPVRMDVERHVVTVDGGEVSLPLKEFDLLEYLLRNVGRVLTRGQLIDRVWG-AD 188

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
              +   ++ H+    K+LR+K+  DP   +     R LGY  +
Sbjct: 189 YVGDTKTLDVHV----KRLRSKIEPDPGSPRHLVTVRGLGYKFE 228


>gi|239626319|ref|ZP_04669350.1| response regulator receiver protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239516465|gb|EEQ56331.1| response regulator receiver protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 234

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           R     P+I  +    +   +D  D+G DD + KP    E+LAR+ A+ RR  ++   RA
Sbjct: 74  RMDITTPVIITTALDGVNDRIDGLDAGADDYLVKPYAAGELLARIRAVTRRPGRLEQGRA 133

Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           +T   I + +D R+         L RRE  ++EYLM N G+ + +  I S I+G  D  V
Sbjct: 134 KTFSNITMDTDRRELAGPSGTVSLSRREAALMEYLMRNAGQVLPRGLILSYIWG-PDSEV 192

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E+  ++++I  LR++L+       + +   +GY ++
Sbjct: 193 EDGNLDNYIYFLRRRLKAVGTAAQIKTVHGIGYRLE 228


>gi|229016644|ref|ZP_04173581.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022859|ref|ZP_04179379.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228738394|gb|EEL88870.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744634|gb|EEL94699.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 218

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  G+   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRRIETDGQAVSLTVKEFDLLYFLCQHNGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|119025586|ref|YP_909431.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154487046|ref|ZP_02028453.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
 gi|118765170|dbj|BAF39349.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084909|gb|EDN83954.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
          Length = 243

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +     P++ ++     Q  +     G DD V KP    E++AR+ AI RR   +  
Sbjct: 71  RIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQQ 127

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + E  PI       +  D  D    G+   L   E ++L YLM N G+ ++K QI   ++
Sbjct: 128 QVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR---------NKLGFDP-VDSKRFLGYSI 220
             +D   +  +VES+IS LRKK+          +K    P +++KR +GY I
Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGIVIEDENGDKHKVTPLIETKRGIGYMI 238


>gi|168209202|ref|ZP_02634827.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170712621|gb|EDT24803.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 222

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IR  S VP+I ++   S    +   + G DD + KP + + +LAR+A++ RR   +
Sbjct: 63  ICREIRKDSNVPIIIVTSRDSDMDEIMSMNLGADDFITKPYNTQVLLARIASLLRRTYSL 122

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S     T G +++         +G+   L + E +IL +L+ N+G  V++  +   ++  
Sbjct: 123 SEQEVLTYGDLKLNLSNGTVSCRGKEEELTKNELKILSHLLKNKGNVVSREDLMDYMWN- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            D  V++N +  ++++LRKKL        ++++R LGY
Sbjct: 182 SDIFVDDNTLSVNVTRLRKKLEEVGVKGAIETRRGLGY 219


>gi|221068907|ref|ZP_03545012.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220713930|gb|EED69298.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 235

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 5/157 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE- 127
           A S VP++ +S        +   + G DD + KP   RE+LAR  A+ RR K     A  
Sbjct: 77  AGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRRSKQFQPAAPA 136

Query: 128 --TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                +++   G+   +      L RRE ++L+ L+   G+ +++  +   I+GL  E+ 
Sbjct: 137 QLAKALQIDEQGQRALIHSRALDLTRREYQLLQSLVNAAGRILSRDALLEQIWGLDSEST 196

Query: 186 EENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +   V++HI  LR KLR +L   + + + R LGYS++
Sbjct: 197 DRT-VDTHIKTLRAKLRERLPDQELIVTHRGLGYSLN 232


>gi|28377207|ref|NP_784099.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|28270038|emb|CAD62938.1| response regulator [Lactobacillus plantarum WCFS1]
          Length = 234

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 28/227 (12%)

Query: 16  IALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV------------- 60
           I +  D+G SL G+    L+FE++    A   ++A+E +   + E +             
Sbjct: 5   ILIVEDEG-SLSGYLTKELQFEDFNVLVAANGLAAMETYQAHQNELLLILLDWMLPKLDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR H QVP+I ++    +   +   D+G DD + KP    E+LAR+  I RR++
Sbjct: 64  MEVLRRIRKHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRVIQRRIE 123

Query: 121 VSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              N+ E   +    D        R    Q EV  L  RE  +L++ +A+  +   +  +
Sbjct: 124 ---NQVEPNQVYQLDDVQLDTKAHRVTNGQEEV-TLTHREYDLLQFFLAHPDEVFTRDDL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G  D   ++NVV+ ++  LR K+        + + R +GY +
Sbjct: 180 LDQVWGA-DFLGQQNVVDVYVGYLRNKITTTGASPLIQTVRGVGYKL 225


>gi|269139404|ref|YP_003296105.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|267985065|gb|ACY84894.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|304559300|gb|ADM41964.1| Transcriptional regulatory protein PhoP [Edwardsiella tarda FL6-60]
          Length = 224

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 2/150 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR   +++      P 
Sbjct: 73  LPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNSGLASQIISMPPF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +     R+  V   +  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 133 QADLSRRELRVNETLIKLTAFEYTIIETLIRNSGKVVSKDALMLQLYP-DAELRESHTID 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + +LRKKL+N+   D + + R  GY  D
Sbjct: 192 VLMGRLRKKLQNEYPGDVITTVRGQGYRFD 221


>gi|257092800|ref|YP_003166441.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045324|gb|ACV34512.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 220

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 15/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L++D  ++          DG + +     +  E   ++   D+  ++  L G+ G  V
Sbjct: 3   VLLVEDDPMIGKSVQQGLRQDGHTADWLRDGQQAELALATTPYDILLLDLGLPGRSGLDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R+ R+ + +P++ I+   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LT--RLRRSANSIPVLVITARDAIADRIRGLDAGADDYLVKPFDLDELSARMRAVQRR-- 118

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               RA    E GP+R+     +  + G    L  RE  +L+ L+   G  +++ ++   
Sbjct: 119 -HAGRAEPVIENGPLRMNPATHELTLDGTPVTLSAREFALLQALLEQPGVPLSRARLEEK 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG  DE +E N VE +I  LR+    KLG + + + R +GY +
Sbjct: 178 LYGWGDE-IESNAVEVYIHSLRR----KLGAEQIKNIRGVGYLV 216


>gi|227485274|ref|ZP_03915590.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227236734|gb|EEI86749.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 237

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LK 120
            R IR  S VP+I +S        +   + G DD V+KP     +LA++ AI RR    K
Sbjct: 77  TRKIRDISNVPIIFLSSKEDTMNKIMAMEMGADDFVSKPFEIDLLLAKIKAILRRAYDYK 136

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +R E   + +        V      L + E +ILE LM N+G  V++ ++ ++++  
Sbjct: 137 ENLSRLEIRGLILDLKSMTVSVGENSLDLSKNEFKILETLMVNKGNVVSREKLMTSLWST 196

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
            D  +++N +  +IS+LRK L   LG  D + +K+  GY ++
Sbjct: 197 -DIYIDDNTLTVNISRLRKSLAG-LGIGDFIKTKQGYGYYVE 236


>gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 223

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D   A+   +G  +E     E    L SS   D+  ++  L   G   L
Sbjct: 3   LLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQSFDLVILDWML--PGHSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +RA  + VP++ ++   ++ + L  F++G DD + KP   RE+LARV A+ RR  
Sbjct: 61  DLCRRLRAGGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  ++    G + +    +     G    L  +E ++LEY M + G+ +   QI   ++ 
Sbjct: 121 ERQSDELRLGDLVLDVSNKLVRRAGRPIDLSAKEYQLLEYFMRHPGQLLTHEQILEHVW- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             D   E   NVV + +  LR+K+    G   + +    GY
Sbjct: 180 --DSGAEPNSNVVAAQVKLLRRKIDKDAGTALIHTVYGQGY 218


>gi|330964534|gb|EGH64794.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 223

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 75/137 (54%), Gaps = 3/137 (2%)

Query: 67  IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +RA S+ +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  +   R
Sbjct: 66  LRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGER 125

Query: 126 AETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            +   +  +  D R   +  E+  L  RE+ +LE L+A  G+ ++K Q+ + ++GL DE 
Sbjct: 126 QQRCGVLAYDLDTRRFTLSDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFGL-DEE 184

Query: 185 VEENVVESHISKLRKKL 201
              + +E ++ +LRKKL
Sbjct: 185 ASPDAIEIYVHRLRKKL 201


>gi|259047938|ref|ZP_05738339.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035358|gb|EEW36613.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 227

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +R++    P++ ++    L+  +   + G DD + KP    E+LARV ++ RR 
Sbjct: 60  IEVVRELRSNGIHTPVLMLTAKSQLEDKVTGLEEGADDYLTKPFEGAELLARVKSLLRRP 119

Query: 120 KVSNNRAET-GPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            V      T G + +  D       +G+V  L  +E +++EY M N  + ++   I   +
Sbjct: 120 NVFVASVMTLGNVELNRDTFTMMTSKGQVL-LNNKEFQLMEYFMMNSNQVLSTDLIMEKV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +GL  EA E NVV  +IS LRKKL        + S R LGY +
Sbjct: 179 WGLDSEA-EINVVWVNISSLRKKLATIEADVTIKSARGLGYQL 220


>gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
          Length = 238

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 11/138 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN---------NRAETGPIRVFSDGRDPEVQG 144
           G DD + KP   RE++ARV AI RR K+ +         N      +++  +  +   Q 
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTKLQDEQVPEVQDENSIHIVDLKILPEFYEAYFQE 155

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RN 203
           E   L  +E  +L YL  N+G+ + + Q+ SA++  +D A +  +V+ HIS LR K+ +N
Sbjct: 156 EKLELTPKEFELLVYLARNKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEKN 214

Query: 204 KLGFDPVDSKRFLGYSID 221
                 + + R LGY ++
Sbjct: 215 TKKPTYIKTIRGLGYKLE 232


>gi|78061618|ref|YP_371526.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77969503|gb|ABB10882.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 220

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR      RA+
Sbjct: 68  RRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVNRR---HAGRAQ 124

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           T    GP+R+        +  +  PL  +E  +L  LM + G  +++ Q    +Y  + E
Sbjct: 125 TTLVIGPLRLDPVKHLVWLNDDEVPLSPKEFVLLHELMRDPGAVISREQFEERLYS-WGE 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 184 EIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216


>gi|73539891|ref|YP_294411.1| DNA-binding response regulator CreB [Ralstonia eutropha JMP134]
 gi|72117304|gb|AAZ59567.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 226

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 22/231 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D + + D        DG+++E    G ++LE         R    A +  ++  G
Sbjct: 6   ILVIEDESAIADTIDYALSTDGMAVERCALGGDALE---------RLRTQAFDLVILDVG 56

Query: 58  EKVL---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              L   E+ R +R  + VP+I ++        +   + G DD V KP   RE+ ARV  
Sbjct: 57  LPDLSGFEVCRTLRTFTDVPVIFLTARHDEIDRVVGLEIGADDYVVKPFSPRELAARVRV 116

Query: 115 IYRRLKVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           I RR       AE     VF+   DG      G    L R E R+L  ++ + G+  ++ 
Sbjct: 117 ILRR-TARQPVAEPASQSVFTVDNDGARVAFHGHWLELTRYEYRMLALMLRHPGRIYSRA 175

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           Q+   ++    + ++   V++HI  +R KLR      DP+ + R +GYSI+
Sbjct: 176 QLMDEVWHDAPDTIDRT-VDTHIKTVRAKLRALDAASDPIRTHRGMGYSIE 225


>gi|310659563|ref|YP_003937284.1| DNA-binding response regulator in two-component system with yedv
           [Clostridium sticklandii DSM 519]
 gi|308826341|emb|CBH22379.1| DNA-binding response regulator in two-component system with YedV
           [Clostridium sticklandii]
          Length = 231

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 14/170 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  S +P++ ++    +   +   D G DD + KP    E+LAR+  I++R+ 
Sbjct: 63  VEVLRRLRQKSDMPVVMLTAKDEMNDKILGLDIGADDYMTKPFAIEELLARIRVIFKRM- 121

Query: 121 VSNNRAETGP----------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +N   + P          + +  D      + +   L +RE  +L+Y+M N+   + +
Sbjct: 122 --DNYKASKPQNDSILRIKGVNLDIDRYTVTYKEKNIDLTKREFELLKYMMQNKNLVITR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I + ++G ++   + NVV+ +I  LR K+ ++ G   + + R +GY I
Sbjct: 180 EMILAKVWG-YEYMGDTNVVDVYIRYLRSKIDDQFGIKLIHTIRGVGYQI 228


>gi|291482776|dbj|BAI83851.1| hypothetical protein BSNT_00666 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 289

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 19/197 (9%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           K+G+ A F  DG  LEG+     E W       D+  ++  L       + + R IR  S
Sbjct: 84  KEGFEAEFVHDG--LEGYQRFTEENW-------DLIILDIMLPSMDG--VTICRKIRETS 132

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNR 125
            VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR K      +  + 
Sbjct: 133 TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKATGKAVIDEDM 192

Query: 126 AETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            ET    +    R+  + GE V  L  +E  +L YL+ N  +  ++ Q+   ++G +   
Sbjct: 193 IETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLLEQVWG-YQFY 251

Query: 185 VEENVVESHISKLRKKL 201
            +E  V+ HI +LRKKL
Sbjct: 252 GDERTVDVHIKRLRKKL 268


>gi|170764175|ref|ZP_02633582.2| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170661077|gb|EDT13760.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 228

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IR  S VP+I ++   S    +   + G DD + KP + + +LAR+A++ RR   +
Sbjct: 69  ICREIRKDSNVPIIIVTSRDSDMDEIMSMNLGADDFITKPYNTQVLLARIASLLRRTYSL 128

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S     T G +++         +G+   L + E +IL +L+ N+G  V++  +   ++  
Sbjct: 129 SEQEVLTYGDLKLNLSNGTISCRGKEEELTKNELKILSHLLKNKGNVVSREDLMDYMWN- 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            D  V++N +  ++++LRKKL        ++++R LGY
Sbjct: 188 SDIFVDDNTLSVNVTRLRKKLEEVGVKGAIETRRGLGY 225


>gi|91787833|ref|YP_548785.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91697058|gb|ABE43887.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 223

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131
           +P++ ++   S Q  +   ++G DD + KP  + E+ AR+ A+ RR LK +++    GP+
Sbjct: 73  IPILILTARGSWQDKVVGLEAGADDYLVKPFEYPELAARLKALLRRSLKTASDVLTLGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    +   + G    L   E R+LEYL+  R   V K  +   +Y    E  + NV+E
Sbjct: 133 SIDLSAQAARLNGAALELTAFEYRLLEYLVRQRPGIVTKQALSDYLYP-HGEDRDSNVLE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + +LR+KL       P+++ R  GY
Sbjct: 192 VLVGRLRRKLDPDGSLGPIETVRGRGY 218


>gi|28871373|ref|NP_793992.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971133|ref|ZP_03399252.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato T1]
 gi|301381851|ref|ZP_07230269.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302059020|ref|ZP_07250561.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato K40]
 gi|302132819|ref|ZP_07258809.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28854624|gb|AAO57687.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213924122|gb|EEB57698.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato T1]
 gi|330877449|gb|EGH11598.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|331015588|gb|EGH95644.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 223

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 75/137 (54%), Gaps = 3/137 (2%)

Query: 67  IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +RA S+ +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  +   R
Sbjct: 66  LRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGER 125

Query: 126 AETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            +   +  +  D R   +  E+  L  RE+ +LE L+A  G+ ++K Q+ + ++GL DE 
Sbjct: 126 QQRCGVLAYDLDTRRFTLSDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFGL-DEE 184

Query: 185 VEENVVESHISKLRKKL 201
              + +E ++ +LRKKL
Sbjct: 185 ASPDAIEIYVHRLRKKL 201


>gi|332093078|gb|EGI98142.1| transcriptional activator protein irlR [Shigella boydii 5216-82]
          Length = 223

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 42  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 102 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNICITLTRKEFQLLWLLAS 161

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217


>gi|327474015|gb|EGF19428.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
          Length = 224

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V          G+   L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 TVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTVSVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+       + + R +GY
Sbjct: 192 VYVSKIRKKLKGTAFAKNLHTLRSVGY 218


>gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 229

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 88/175 (50%), Gaps = 7/175 (4%)

Query: 52  FLIGKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
           ++IG G   +E+ R +R   A + VP+I ++        +   ++G DD V KP   RE+
Sbjct: 55  WMIG-GTSGIEVCRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPREL 113

Query: 109 LARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           +ARV A+ RR++  ++      G + +         + +   +   E R+L + M + G+
Sbjct: 114 IARVGAVLRRVRPALAGETITVGDLSLDPTAHRVTRKAQSIKIGPTEFRLLRHFMEHPGR 173

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ Q+  A++G   + +E   V+ HI +LR+ +      DPV + R  GY+++
Sbjct: 174 VFSRGQLLDAVWGSGSD-IELRTVDVHIRRLRQAIAIPGAPDPVRTVRSAGYALE 227


>gi|89072828|ref|ZP_01159385.1| Response regulator [Photobacterium sp. SKA34]
 gi|89051350|gb|EAR56805.1| Response regulator [Photobacterium sp. SKA34]
          Length = 219

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 10/153 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
             P++ +S    L   +D  ++G DD + KP    E++ARV A  RR    N        
Sbjct: 72  NCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRR-STGNASPVIQAG 130

Query: 132 RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            +  D R  +V  +G++  L   E ++L YLM N  K +++T++   IY   FD   + N
Sbjct: 131 NLSLDTRTSKVTWEGQIIDLTALEFKVLSYLMHNTDKVISRTELVEHIYKQDFDR--DSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E  I ++R+    K+G D + + R LGY I+
Sbjct: 189 TIEVFIGRIRR----KIGNDVIKTVRGLGYRIN 217


>gi|225569381|ref|ZP_03778406.1| hypothetical protein CLOHYLEM_05465 [Clostridium hylemonae DSM
           15053]
 gi|225161589|gb|EEG74208.1| hypothetical protein CLOHYLEM_05465 [Clostridium hylemonae DSM
           15053]
          Length = 230

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 85/162 (52%), Gaps = 5/162 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R IR  S V ++ ++        ++ +D+G DD + KP     ++++V A  RR +
Sbjct: 61  LDFCREIRRVSDVFILFLTALDQEVDIVNGYDTGADDYITKPFSLMVLISKVNAFMRRRE 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +       T P     D ++ +V  +GE  PL ++E ++L Y M +  + ++K QI  A
Sbjct: 121 HTGGEGTVLTAPDLTL-DCKEMKVFIKGEETPLSKKEMQLLAYFMEHPRQIISKEQILEA 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ +  + V++N V  +IS+L+KKL      + + + R +GY
Sbjct: 180 VWDVDGQFVDDNTVPVNISRLKKKLGGDSETEYIKNIRGIGY 221


>gi|224588354|gb|ACN58978.1| two-component response regulator [uncultured bacterium BLR19]
          Length = 226

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 2/153 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           + ++   +I IS   SL+  +   + G DD + KP H  E+ AR+ ++ RR      +A 
Sbjct: 69  KRNNNTGVIIISAKSSLEDKITGLEIGADDYLTKPFHLSELNARLKSVLRRRMFDGEQAI 128

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               I++  D    EV G+   L ++E  +L Y ++N+ K + K  I   ++G +    +
Sbjct: 129 IFNEIKIAPDTMKVEVNGKPIVLTKKEYDLLIYFISNKTKILPKETIVEHLWGDYISTSD 188

Query: 187 E-NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + + +H+S LRKKL +  G D + +   +GY
Sbjct: 189 SYDFLYTHVSNLRKKLMDNGGEDYIKTVYKIGY 221


>gi|222087224|ref|YP_002545759.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221724672|gb|ACM27828.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 219

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 20/166 (12%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L ++ R   + P+I ++    +   ++  +SG DD + KP +  E+ AR+ A+ RR    
Sbjct: 63  LKKLRRKPDETPVIILTARDQISDRIEGLNSGADDYLVKPFNLGELSARILAVARRYSGS 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               ++ ++   +    RV  DG+D  + G       RE  +L+ L+   G  ++K QI 
Sbjct: 123 PQPTIRFADLEIDQPQRRVRLDGKDVVLTG-------REWAVLDLLVTRPGAIISKDQIE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A+Y  F   +E N VE ++S+LRK    K+G D + + R +GY +
Sbjct: 176 EALYA-FGSEIESNTVEVYVSRLRK----KIGKDRIRTARGVGYCL 216


>gi|254447699|ref|ZP_05061165.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium HTCC5015]
 gi|198263042|gb|EDY87321.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium HTCC5015]
          Length = 229

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 22/209 (10%)

Query: 27  EGFN------SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80
           EGFN        E EEWL   + + +          G ++ +  RI + ++QVP+I ++ 
Sbjct: 25  EGFNVHWAQLGGEAEEWLSCHSADGIVLDVGLPDTNGFELCK--RIRQNNTQVPIIFLTA 82

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGR 138
                  +   + G DD V KP   RE++AR+ AI RR   S++ A     P  +  D  
Sbjct: 83  RKEEVDRIVGLEIGGDDYVVKPFSPRELVARIKAILRRASRSDDIAFQSVAPSLMQHDAN 142

Query: 139 DPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY----GLFDEAVEENVVES 192
              +   GE   L   E RIL  L+   G  +++ Q+  A +      FD A     V++
Sbjct: 143 RQCIVFSGEAVDLTLYEYRILLALLERAGHVLSRAQLMDAAWSDPSASFDRA-----VDT 197

Query: 193 HISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           HI  +R +L++ +   DP+ + R LGYS+
Sbjct: 198 HIKGIRARLKSIRPDLDPIRTHRGLGYSL 226


>gi|126642782|ref|YP_001085766.1| transcriptional regulator [Acinetobacter baumannii ATCC 17978]
          Length = 168

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 5   MQVLKQIRQRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSG 64

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V    A      E+G + +  +      +G+   L  RE  IL  LM +  K  +K  + 
Sbjct: 65  VEAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMTHPNKIFSKANLE 124

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y  FD  V  N +E ++  LR     KLG D + + R LGY +
Sbjct: 125 DKLYD-FDSDVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 165


>gi|332654953|ref|ZP_08420695.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
 gi|332516296|gb|EGJ45904.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
          Length = 229

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 21/202 (10%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRI 66
           +AL K+GY     +DG S     S+ +   L +    D++ ++  L I  G  +++  R 
Sbjct: 19  QALKKEGYSVDCCNDGES-----SMIYA--LNTDYGYDLAIVDRMLPIIDGLTIIKAMR- 70

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
            R   Q+P+I I+   +L   +D  DSG DD + KP H RE++ARV A+ RR        
Sbjct: 71  -RKQIQIPVIIITGMSALDDRVDGLDSGADDYLIKPFHIRELMARVRALTRR---PQQIQ 126

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E G +  ++D       R     G+   L  +E  +L  LM       ++ Q+   ++G 
Sbjct: 127 EMGMLS-YADLHFDYPNRKVTCNGQELILTAKETELLSVLMKQPETSFSREQLVLKVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR 202
            +  +E   V+++IS LRK+LR
Sbjct: 185 SNADIEPGNVDNYISFLRKRLR 206


>gi|210614641|ref|ZP_03290252.1| hypothetical protein CLONEX_02466 [Clostridium nexile DSM 1787]
 gi|210150631|gb|EEA81640.1| hypothetical protein CLONEX_02466 [Clostridium nexile DSM 1787]
 gi|295108131|emb|CBL22084.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 21/202 (10%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRI 66
           +AL K+GY     +DG S     S+ +   L +    D++ ++  L I  G  +++  R 
Sbjct: 19  QALKKEGYSVDCCNDGES-----SMIYA--LNTDYGYDLAIVDRMLPIIDGLTIIKAMR- 70

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
            R   Q+P+I I+   +L   +D  DSG DD + KP H RE++ARV A+ RR        
Sbjct: 71  -RKQIQIPVIIITGMSALDDRVDGLDSGADDYLIKPFHIRELMARVRALTRR---PQQIQ 126

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E G +  ++D       R     G+   L  +E  +L  LM       ++ Q+   ++G 
Sbjct: 127 EMGMLS-YADLHFDYPNRKVTCNGQELILTAKETELLSVLMKQPETSFSREQLVLKVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLR 202
            +  +E   V+++IS LRK+LR
Sbjct: 185 SNADIEPGNVDNYISFLRKRLR 206


>gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4]
          Length = 238

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE++AR+ AI RR +     A          + G ++V+ +  +  + 
Sbjct: 96  GADDYMTKPFSPREVVARIKAILRRTQTLIQSAVEEQDPKDYLKVGELKVYPEHYEAFIG 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202
            E+  L  +E  +L YL  N+G+ + + Q+ SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 156 EELLELTPKEFELLLYLTENKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 215 NTKKPIYIKTIRGLGYKLE 233


>gi|170759073|ref|YP_001785608.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406062|gb|ACA54473.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 288

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR HS+VP+I IS   S    +   ++G DD + KP  +  +LA++  + RR+  S  + 
Sbjct: 123 IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 182

Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +T     G + ++++    E +G    L + E  +L YL  N  K V++  +   ++   
Sbjct: 183 DTDFFKIGDLILYTNKSILEFRGRKTELSKNEFSLLLYLFKNINKIVSRDTLLEILWSDT 242

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  +++N +  ++++LRK+L      + +++KR  GY +
Sbjct: 243 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 280


>gi|269216634|ref|ZP_06160488.1| DNA-binding response regulator CiaR [Slackia exigua ATCC 700122]
 gi|269130163|gb|EEZ61245.1| DNA-binding response regulator CiaR [Slackia exigua ATCC 700122]
          Length = 234

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 4/118 (3%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--PIRVFSDGRDPEVQGEVFPLP 150
           +G DD + KP    E+L R+ AI RR   S  R E     + ++ D     V      L 
Sbjct: 101 AGADDYLTKPFAKDELLLRIEAILRRCTDSFERKEFSFKDLVLYPDMHAAYVGDAEVKLK 160

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            R+  +LE+L++ +G+ V+K+QIF  ++G   +    NVVE ++S +RK+L+   G+D
Sbjct: 161 GRQYDVLEFLVSRKGQLVSKSQIFDRVWGFMSDT-STNVVEVYVSAVRKQLK-PFGYD 216


>gi|262373903|ref|ZP_06067180.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262310914|gb|EEY92001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 240

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 15/174 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + +R   Q PL+ ++        +   + G DD   KP   REI+AR+ AI+RR++
Sbjct: 64  FEVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRME 123

Query: 121 VSNNRAETG--------PIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKR 167
           +      +         P++  +   +P     +  G++  L R E R+L  L+ +  K 
Sbjct: 124 IQAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPEKV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++ Q+   I+   + ++ E  V++HI  LR+KL+      DP+ + R  GYS+
Sbjct: 184 FSRQQLMDHIWEHPEHSL-ERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSL 236


>gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 239

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR K+               + G +++  +  +   Q
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVSESPDEESIKIGELKILPEFYEAYFQ 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202
           G    L  +E  +L YL  N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233


>gi|87200295|ref|YP_497552.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135976|gb|ABD26718.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 229

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 52  FLIGKGEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
           ++IG G   +E+ R +R +   + VP+I ++        +   + G DD V KP   RE+
Sbjct: 55  WMIG-GTSGIEVCRRLRRNKETAHVPIIMLTARSDEDDRIRGLEIGADDYVTKPFSPREL 113

Query: 109 LARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           +ARV A+ RR++  ++      G + +         +G+   +   E R+L++ M + G+
Sbjct: 114 IARVGAVLRRVRPALAGETITVGDLSLDPTAHRVSRRGQPMKVGPTEFRLLKHFMEHPGR 173

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ Q+  A++G   + +E   V+ HI +LR+ +      DPV + R  GY+++
Sbjct: 174 VFSRGQLLDAVWGSGSD-IELRTVDVHIRRLRQAIAVPGAADPVRTVRSAGYALE 227


>gi|312968636|ref|ZP_07782845.1| transcriptional regulatory protein qseB [Escherichia coli 2362-75]
 gi|312286854|gb|EFR14765.1| transcriptional regulatory protein qseB [Escherichia coli 2362-75]
          Length = 219

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSQMGFSIDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|311279965|ref|YP_003942196.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749160|gb|ADO48912.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 224

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E  L + R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ 
Sbjct: 57  EDGLSMIRRWRSHDVSLPILVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVAARIQALM 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +  
Sbjct: 117 RRNSGLASQVITIPPFQVDLSRRELSIHDEVIKLTAFEYTIMETLIRNSGKVVSKDSLML 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y    E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 177 QLYP-DAELRESHTIDVLMGRLRKKIQAQYAQDVITTVRGQGY 218


>gi|229084387|ref|ZP_04216667.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228698927|gb|EEL51632.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 219

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  IEVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + E    G IR+    R  E  GE   L  +E  +L +L  + G+  ++ Q+   +
Sbjct: 118 KQEEQQEELQFGSIRINEKSRKIETNGETISLTVKEFDLLHFLCEHNGQVFSREQLLEKV 177

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G +D A     V++H+  +R KL
Sbjct: 178 WG-YDYAGSTRTVDTHVKTMRLKL 200


>gi|254520763|ref|ZP_05132819.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226914512|gb|EEH99713.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 221

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 18/192 (9%)

Query: 41  SAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLD 89
           SA + + AIE F   K + V+    LP+         IR  S VP+I ++      T + 
Sbjct: 31  SAEDGMQAIELFKNNKIDLVILDIMLPKANGFVVLNKIRQESNVPVIMLTAMSDDYTQIM 90

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAET-GPIRVFSDGRDPEVQGEVF 147
            FD   DD + KP     +  R+ A+ RR +KVS N+    G I +  +G      GE  
Sbjct: 91  SFDEEADDYITKPFSIIVLHKRIEALLRRGVKVSENKKWCYGDIEIDFEGYSARKNGENI 150

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L  +E +++E L+   GK + + QI   ++ + +EA  + V++ +I  +RKKL      
Sbjct: 151 DLKPKEIKLIELLLKYEGKVLTRAQILDNLWRI-EEAPNDRVIDVYIKNIRKKLL----L 205

Query: 208 DPVDSKRFLGYS 219
           D + + + +GY 
Sbjct: 206 DCIVTVKGIGYK 217


>gi|220926004|ref|YP_002501306.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219950611|gb|ACL61003.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 222

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 17/225 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V     A+  + G +++     E E W +    +   A+    + K + + 
Sbjct: 3   ILLVEDDPRVARKVAAVLTEAGYAVDHVEDGE-EAWFRGDTEDYDLAVLDLGLPKMDGLA 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R   A   +P++ ++   +    ++  D+G DD + KP    E+LARV A+ RR   
Sbjct: 62  VLKRWRAAGRDLPVLILTARGAWAERVEGIDAGADDYLTKPFAMEELLARVRALLRR--- 118

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFS 175
           +  RA     +GP  V  D R   V  +  P  L   E R L YLM + G+ +  T++  
Sbjct: 119 AAGRAVPVFISGP--VVLDTRKMRVTADDVPLNLSPLEYRCLSYLMHHAGRVIPPTELME 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y   D   + N +E  + +LR+    KLG D ++++R  GY +
Sbjct: 177 HLYA-HDHDRDPNALEVLVGRLRR----KLGVDLIETRRGFGYLV 216


>gi|314935479|ref|ZP_07842831.1| DNA-binding response regulator [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656044|gb|EFS19784.1| DNA-binding response regulator [Staphylococcus hominis subsp.
           hominis C80]
          Length = 221

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 16/220 (7%)

Query: 16  IALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI----- 66
           + +  DD V  E   N L    +  S A++  + +E F   + E VL    LP       
Sbjct: 3   VLIVEDDVVIAESLGNELSHWNYEVSIAKQFDNILEEFKTAEPELVLLDINLPTFNGYHW 62

Query: 67  ---IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LK 120
              IR  S VP+I IS        +     G DD + KP +    +A++ A+ RR   L 
Sbjct: 63  CQEIRKVSNVPIIFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLT 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VSNN       ++  D        +   L   E +IL  L  N GK V +T I    +  
Sbjct: 123 VSNNEMTVKGCKLVVDEATLYYNNDSVQLSFTELQILNKLFQNEGKYVNRTAIIEKCWE- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  +++N +  ++++LRKKL++    D +++K+ +GY +
Sbjct: 182 SENFIDDNTLAVNMTRLRKKLQSIGIVDFIETKKNVGYKV 221


>gi|283783193|ref|YP_003373947.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|298253961|ref|ZP_06977548.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
 gi|283441704|gb|ADB14170.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|297532104|gb|EFH71079.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
          Length = 246

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 14/169 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +   +VP++ ++     Q  +     G DD V KP    E++AR+ AI RR +  + 
Sbjct: 71  RIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEPDE 130

Query: 125 RA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   + +  D  D    G    L   E ++L YLM N G+ ++K+QI + ++  +
Sbjct: 131 ETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ-Y 189

Query: 182 DEAVEENVVESHISKLRKKL----------RNKLGFDPVDSKRFLGYSI 220
           D   +  +VES+IS LRKK+          + +     +++KR +GY I
Sbjct: 190 DWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMI 238


>gi|212712243|ref|ZP_03320371.1| hypothetical protein PROVALCAL_03329 [Providencia alcalifaciens DSM
           30120]
 gi|212684989|gb|EEB44517.1| hypothetical protein PROVALCAL_03329 [Providencia alcalifaciens DSM
           30120]
          Length = 227

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 5/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++ + H + P++ ++    +   +   ++G DD + KP    E+ AR+ A+ RR   +
Sbjct: 68  LAQMRKRHQETPVLLLTANSDVADRVKGLNAGADDYLTKPFDIAELEARIRALLRRSHGN 127

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N ++      F +     ++ E   L  RE  +L  L   RG+ V+KTQ+F  ++ L D
Sbjct: 128 INESQCFGDLCFHEEGYFSLKMEPLGLTPREYAVLNTLFHRRGRPVSKTQLFEQVFSLSD 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           EA  ++ +E ++ ++RKKL    G D  +++ R LGY ++
Sbjct: 188 EANLQS-IELYVHRVRKKLA---GSDVNINTLRGLGYRLE 223


>gi|169351289|ref|ZP_02868227.1| hypothetical protein CLOSPI_02068 [Clostridium spiroforme DSM 1552]
 gi|169292351|gb|EDS74484.1| hypothetical protein CLOSPI_02068 [Clostridium spiroforme DSM 1552]
          Length = 225

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 108/225 (48%), Gaps = 17/225 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIG- 55
            ++I+D   + D    L  D+G     ++S +   + Q + +      D+  ++  L G 
Sbjct: 7   ILIIEDDKTISDELKILLDDNG-----YDSYQLFNFHQVAKKIIEFDPDLVLLDIVLPGT 61

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G+ +L   + IR  S +P+I ++        +     G DD + KP +   +L R+  +
Sbjct: 62  NGQTIL---KEIRKESNLPVIMLTSKTGDINEIMSMSYGADDYITKPYNPTLLLLRIETL 118

Query: 116 YRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +R L  + SN++ E   + +         +     L + E  IL YL+ N GK V++ ++
Sbjct: 119 FRHLDDQGSNDQIEYNQMTINLLKSTLTYKDNEIILSKNELTILYYLIKNHGKIVSRDEL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              ++  + + V++N +  +I++LRKK++N    D ++++R  GY
Sbjct: 179 MDHLWD-YSDFVDDNTLTVNINRLRKKMKNLGILDSIETRRKQGY 222


>gi|308049852|ref|YP_003913418.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307632042|gb|ADN76344.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 224

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+         + G  ++   +    E+L ++   D++ ++  L    E  L
Sbjct: 3   ILVIEDDPLLCHHLKVRLSELGNQVQASQTASEGEYLANNYPLDIAVVDLGL--PDESGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L + +R   +  P++ ++   S Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLIQRLRDQGKAFPILILTARDSWQDKVEGLNAGADDYLVKPFRIEELMARLNALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +++   G+   + G++  L   E +ILEYLM +  + ++K ++   +Y 
Sbjct: 121 GFIKPEISCGSLKMDLTGKSVTLAGDLLELTAFEYQILEYLMRHHQQVISKQRLLDVLYE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             D   + N VE  IS+LRKKL +    +P+ + R  GY
Sbjct: 181 --DREGDPNTVEVMISRLRKKLVSGGMNNPIVTIRGQGY 217


>gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens
           TA208]
 gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 227

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 32/223 (14%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           K+G+ A F  DGV  EG+     E+W       D+  ++  L       + + R IR  S
Sbjct: 22  KEGFEAEFVHDGV--EGYQRFTEEDW-------DLVILDIMLPSMDG--VTICRKIRETS 70

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV------SNNR 125
            VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR +       S++ 
Sbjct: 71  SVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYRATGQAVKSDDL 130

Query: 126 AETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            ET    +    R+  + G+ V  L  +E  +L YL+ N  +  ++ Q+   ++G +   
Sbjct: 131 IETACFSINKKTREVFLHGKSVENLTPKEFDLLFYLVQNPRQVFSREQLLEQVWG-YQFY 189

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221
            +E  V+ HI +LRKKL +       D K FL      GY  D
Sbjct: 190 GDERTVDVHIKRLRKKLSS-------DEKPFLYTVWGVGYKFD 225


>gi|258593609|emb|CBE69950.1| putative Two-component transcriptional regulator; putative
           transcriptional regulator involved in heavy-metal
           (Cu/Zn) homeostasis [NC10 bacterium 'Dutch sediment']
          Length = 225

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 23/213 (10%)

Query: 19  FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIG 77
             ++GV ++  NS +  E+L S    DV  ++  L GK    ++L R +RA     P++ 
Sbjct: 20  LAEEGVVVDIANSGDEGEYLASVNDYDVIVLDWLLPGKDG--IQLCRELRARGLSTPILM 77

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP----IRV 133
           ++   +L+  +   D+G DD + KP    E+LAR+ A+ RR         TGP    +RV
Sbjct: 78  VTAKDALRDRIKGLDTGADDYMVKPFAFAELLARIRALMRR--------GTGPRPTMLRV 129

Query: 134 FSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAVEE 187
                DP        G    L  +E  I+E+L    G+ V +T +   I+   FD     
Sbjct: 130 ADLVIDPASHRVTRGGASIKLTTKEYAIIEFLARRVGEVVTRTTLGEHIWEDEFDNLT-- 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N+V+ HIS LRKK+        + + R  GY +
Sbjct: 188 NLVDVHISNLRKKIDAGSTVSLIHTVRGRGYRL 220


>gi|284921875|emb|CBG34950.1| two-component response regulator [Escherichia coli 042]
          Length = 239

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 58  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 117

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 118 FSFSELLARVRAQLRQHHALNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 177

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 178 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYS 233


>gi|119386003|ref|YP_917058.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119376598|gb|ABL71362.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 219

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 7/158 (4%)

Query: 65  RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA   V P+I ++    +   ++  ++G DD + KP    E+ AR+ ++ RR   + 
Sbjct: 64  RSLRAGGNVTPVIILTALDQISDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYSGNP 123

Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     G + V    R     G    L  RE  + E  +   G+ ++K Q+   +Y  FD
Sbjct: 124 NPIIVHGALAVDLALRSIRRDGRPVQLTAREWALFEAFLTRPGQLLSKAQLEEKLYA-FD 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             VE N +E H+S+LRK    KLG   ++++R LGY +
Sbjct: 183 TEVESNTIEVHVSRLRK----KLGAAVIETERGLGYRL 216


>gi|294636784|ref|ZP_06715122.1| DNA-binding response regulator PhoP [Edwardsiella tarda ATCC 23685]
 gi|291089999|gb|EFE22560.1| DNA-binding response regulator PhoP [Edwardsiella tarda ATCC 23685]
          Length = 224

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           GE  L L R  R+    +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+
Sbjct: 56  GEDGLSLIRRWRSEQVTLPILVLTARESWQEKVTVLEAGADDYVTKPFHLEEVLARMQAL 115

Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR   +++      P +V    R+  V   +  L   E  I+E L+ N GK V+K  + 
Sbjct: 116 MRRNSGLASQIISLPPFQVDLSRRELRVDDTLIKLTAFEYTIMETLIRNNGKVVSKDALM 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +Y    E  E + ++  + +LRKKL+     + + + R  GY  D
Sbjct: 176 LQLYP-DAELRESHTIDVLMGRLRKKLQQAFPAEVITTVRGQGYRFD 221


>gi|266625369|ref|ZP_06118304.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
 gi|288862730|gb|EFC95028.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
          Length = 225

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           S   DV  ++  L   GE   ++ R +R AH Q P++ ++    +   +   D G DD +
Sbjct: 42  SGEYDVIVLDVML--PGENGFDVVRKLRKAHVQTPVLMLTARDDISDKVTGLDRGADDYM 99

Query: 100 NKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
            KP    E+LARV A+ RR  +V       G + +     D     +   L  +E  +L+
Sbjct: 100 TKPFVPEELLARVRALSRRQGEVVVEELHFGDLVLNLSTNDLLRGRKSIHLGYKEFEVLK 159

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            LM N GK ++K  + S ++G  D   E+N VE++IS LRKKL
Sbjct: 160 LLMNNAGKIISKDTLISRVWG-NDSDAEDNNVEAYISFLRKKL 201


>gi|187933594|ref|YP_001887202.1| response regulator [Clostridium botulinum B str. Eklund 17B]
 gi|187721747|gb|ACD22968.1| response regulator [Clostridium botulinum B str. Eklund 17B]
          Length = 218

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P+I ++    L   +    SG +D + KP    E+LAR+  + RR   ++N  E G +
Sbjct: 72  NIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVLRRYSKNSNCIEFGNL 131

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +++ + R  +   E   L  +E  ++  L+ N+   +++  +   I+G ++   E   ++
Sbjct: 132 KIYEEERSIKKDDETIDLTLKEFELMVLLVKNKNMALSREYLLEKIWG-YEYMGETRTID 190

Query: 192 SHISKLRKKL 201
           +HI KLRKKL
Sbjct: 191 NHIQKLRKKL 200


>gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905]
          Length = 227

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 6/181 (3%)

Query: 26  LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           +E F +    E      RE +  +   ++   E    + + IRA S VP+I ++   +  
Sbjct: 26  IETFTAASGTEAYDIIVREKIDLVLLDVMMPHEDGFVVCQSIRAMSNVPIIFLTARDAND 85

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGRDP 140
             +     G DD + KP  H E++AR+ A+ RR      ++       GPI++    R  
Sbjct: 86  DKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGANIAELQQKYVVFGPIKIDEIARKV 145

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
            V G+  PL  +E  +L   M N G    + Q+   I+ + D       V++HI  LR K
Sbjct: 146 SVDGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERIWDI-DYVGGTRTVDTHIKTLRIK 204

Query: 201 L 201
           L
Sbjct: 205 L 205


>gi|172058697|ref|YP_001815157.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991218|gb|ACB62140.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 222

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G    EL  ++R++ ++P++ ++    L    D F +G DD + KP    E++ R+ A+ 
Sbjct: 56  GRTGFELCALLRSNQEIPILMLTALGELTDKRDGFSAGADDYITKPFDPEELVFRLHAVA 115

Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR  K +    + G + +    +   +      +PRRE  +L  L +  G+  ++ ++  
Sbjct: 116 RRYQKAAVPTMQFGEVTIDKRSQQLTIGTTRLTIPRREFELLHQLASFPGRVFSREELIE 175

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++GL D   ++  V+ HI +LR +L        +++ R LGY ++
Sbjct: 176 HVWGL-DFMGDDRTVDVHIKRLRTRLHQTEAI-TIETVRGLGYRLE 219


>gi|332561089|ref|ZP_08415407.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332274887|gb|EGJ20203.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 220

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ DG        G   E   +LE       + R +   ++  ++  G  + 
Sbjct: 3   ILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLD-LMLPDGSGLE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L ++  A   VP++ ++    L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  LLAKLRAAREPVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPAA 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++  R E   + +     +    G    L  RE  +L  LMA+    ++K QI   +YG 
Sbjct: 122 LATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N +E H+ KLR KL +  GF  +++ R +GY +
Sbjct: 181 WQEEIESNAIEVHVHKLRAKLGH--GF--IETVRGVGYRL 216


>gi|260768553|ref|ZP_05877487.1| DNA-binding response regulator [Vibrio furnissii CIP 102972]
 gi|260616583|gb|EEX41768.1| DNA-binding response regulator [Vibrio furnissii CIP 102972]
 gi|315180264|gb|ADT87178.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Vibrio furnissii NCTC
           11218]
          Length = 223

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 12/202 (5%)

Query: 28  GFNSLEF--------EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGI 78
           G N L F        +E L  +       I   L+  G   LE+ + +R H  Q  ++ +
Sbjct: 19  GLNHLGFATDDTGDGQEALSMALNNTYDVIILDLMLPGLSGLEILKALRKHKKQTRVLIL 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSD 136
           S     Q  ++    G DD + KP    E+ AR+  I RR  L+  +         +   
Sbjct: 79  SAKTETQDRVEGLLQGADDYLTKPFSFEELHARILTIMRRGSLEQVDQTLTVDEYSLNLV 138

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            +    + +   L   E +IL+ L A   + ++  QI  A+ G FD  V +N +E+H+S 
Sbjct: 139 DKTFHFEQQTVDLTPNEFKILQCLFAAPNRVMSVEQISEAVVGHFD-YVAKNTIEAHLSA 197

Query: 197 LRKKLRNKLGFDPVDSKRFLGY 218
           +RKK+R+  G  PV +KR  GY
Sbjct: 198 IRKKVRDAGGTLPVKNKRGFGY 219


>gi|284035398|ref|YP_003385328.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283814691|gb|ADB36529.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 225

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 14/212 (6%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           +VKDGY+          E  ++  E EE +     + V        G G +++E  + + 
Sbjct: 20  MVKDGYVC---------ETASTFREAEEKIHLYTYDCVIVDLTLPDGNGFQIIEALKRLI 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAE 127
           A + V +I   D  +L+  L   + G DD + KP H  E+ ARV ++ RR +   +    
Sbjct: 71  ATTGVIIISARD--ALEDKLRGLEIGSDDYLTKPFHLSELNARVKSLLRRRQFGGHTEIR 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVE 186
              I V    R+  V G +  L R+E  +L Y ++N    + K  I   ++G   D A  
Sbjct: 129 FREIVVVPHNRNVYVNGHLTTLSRKEYDLLLYFLSNVDVALTKASIAEHLWGDNIDSADS 188

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++V SHI  LR+KL  K   D V S   +GY
Sbjct: 189 FDMVYSHIKNLRRKLLEKGAADYVQSIYGIGY 220


>gi|330809365|ref|YP_004353827.1| two-component regulator system, response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377473|gb|AEA68823.1| Putative two-component regulator system, response regulator
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 219

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 27/229 (11%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLI------ 54
           +L++D   + D       DDG +++         W+Q  + AR  VS     LI      
Sbjct: 4   LLVEDSPRLGDAVREQIADDGHAVD---------WVQNLAQARSSVSTTAYDLILLDLML 54

Query: 55  --GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
             G+G   L   R   A     +I ++    +   +   ++G DD + KP    E+ ARV
Sbjct: 55  PDGRGLDFLRQRR--SAGDATAVIILTAQDQISDRIAGLNAGADDYLVKPFDLFELSARV 112

Query: 113 AAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           AA+ RR   + N +   G + V    R  +  G    L  RE  +LE  +   G  ++K 
Sbjct: 113 AAVARRYSGNPNPQIRLGELHVDMTARTLQRAGMAVDLTAREWALLEAFIQRPGALLSKG 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+   +Y  F   +E N +E +IS+LRK    KLG D +++ R +GY +
Sbjct: 173 QLEDRLYA-FGAEIESNTIEVYISRLRK----KLGRDLIETVRGMGYRM 216


>gi|229147640|ref|ZP_04275984.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228635849|gb|EEK92335.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
          Length = 220

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++AR+ AI RR   
Sbjct: 57  EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARIQAILRRSD- 115

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 116 CNQQKEISFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 176 VWG-YNIVVNPNVVDLYIGYVRKKLKCEKKERYIQTIHGRGYSM 218


>gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
 gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
          Length = 228

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 12/206 (5%)

Query: 24  VSLEGFNS--LEFE------EWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVP 74
           ++L  FN   ++FE      ++LQ + + D++ ++  L G  G  +L+  R   +   +P
Sbjct: 19  LTLASFNYELVDFENGKDAYDYLQDN-KVDLAILDLMLPGMNGYDILKFIRSKASLKDLP 77

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134
           +I +S        +   D G DD + KP    E+ AR+ ++ RR K      +   + + 
Sbjct: 78  VIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRRSKKDERLIQIHGLCID 137

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D R   ++ E   L  +E  +L+YL  N G+ V++ ++ + I+G +D   E   ++ HI
Sbjct: 138 LDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQIWG-YDFIGESRTLDVHI 196

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + LRKKL N+     + S R +GY +
Sbjct: 197 NSLRKKLGNEYAH-WIQSVRQVGYRL 221


>gi|149190294|ref|ZP_01868568.1| transcriptional activator protein IrlR [Vibrio shilonii AK1]
 gi|148835901|gb|EDL52864.1| transcriptional activator protein IrlR [Vibrio shilonii AK1]
          Length = 227

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 24/222 (10%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + L++ GY      DGV            +L ++   D+  ++  L    G ++L+  R 
Sbjct: 18  KGLIESGYTVDLSTDGVD---------ALYLATTNDYDLIVLDIMLPKLNGWQLLQTLR- 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
             +    P+I +S    ++  +   + G +D + KP    E+LARV    R    S    
Sbjct: 68  -SSDIPTPVIILSAKDQVEDRVKGLELGANDYLVKPFAFIELLARVKNALRHQTTS---I 123

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +T  +   +D       R      +  PL  +E  +LEYL A RG+ V +TQI SA++ +
Sbjct: 124 KTESVLCIADLSLDLLKRKATRNNDTIPLTAKEFSLLEYLFAKRGQVVTRTQIASAVWDM 183

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   + NV+++ + +LR K+        + + R +GY +D
Sbjct: 184 NFDS--DTNVIDAAVKRLRSKIDKPYQIKLIQTVRGMGYKLD 223


>gi|300813866|ref|ZP_07094171.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512053|gb|EFK39248.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 223

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 94/168 (55%), Gaps = 8/168 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++LE  R     +++  I +S    ++  ++  D G +D ++KP H  E+ AR+ ++ 
Sbjct: 59  GMEILEEFRTFNQDTKI--IILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARIRSLT 116

Query: 117 RRLKVSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR  ++NN+  +     F S  R  ++  +   L R+E  ILEYL+ NRG+ +++ ++  
Sbjct: 117 RRNFITNNQMLSYKNLSFDSKKRIVKIDDKEISLTRKELGILEYLLLNRGRPISQEELID 176

Query: 176 AIYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   D +V+   N +  HIS LRKKL+  L +DP+ ++  LGY ++
Sbjct: 177 HVW---DSSVDLFSNSIRVHISALRKKLKKALKYDPIINRVGLGYQLE 221


>gi|268609051|ref|ZP_06142778.1| response regulator receiver protein [Ruminococcus flavefaciens
           FD-1]
          Length = 225

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 4/168 (2%)

Query: 57  GEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   +E+ R +R  H   P++ ++    ++  ++  D G DD + KP    E+LARV A+
Sbjct: 56  GMNGIEVLRNLRQEHINTPVLLLTARSEVEDKINGLDCGADDYLTKPFITGELLARVRAL 115

Query: 116 YRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR    V  +  +   + +  D      +G    L  +E +I+E L++N  + + K +I
Sbjct: 116 TRRKGEIVDESNLDFNGLTLNKDTCSVIWKGSDVKLSLKEYQIMELLISNPRRILPKERI 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              I+G ++  VE N +E +IS LRKKL +      + + R +GYS++
Sbjct: 176 IEKIWG-YESDVEYNNIEVYISFLRKKLASISAPVQIKTARGIGYSLE 222


>gi|228997630|ref|ZP_04157239.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
 gi|228762092|gb|EEM11029.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
          Length = 224

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+++  ++   I   L+  G   +E+ R +RA    P+I ++   S+   +   DSG DD
Sbjct: 38  LEAAIEKNYDIILLDLMLPGLNGMEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGP--------IRVFSDGRDPEVQGEVFPL 149
            + KP    E+LAR+  I+RR      + E+ P        +++  + R      E+  L
Sbjct: 98  YLPKPFAIEELLARIRVIFRR----EQKEESKPTLLLAFKDLQLHVESRTLRKNDEIIEL 153

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L   M N  + + +  +   ++G +D  VE N+V+ ++  LR KL      + 
Sbjct: 154 TNKEFELLLMFMKNINRVLTRDILLEQVWG-YDAIVETNIVDVYVRYLRNKLHGVDKEEY 212

Query: 210 VDSKRFLGYSI 220
           + + R  GY +
Sbjct: 213 IQTVRGAGYVM 223


>gi|254412739|ref|ZP_05026512.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180474|gb|EDX75465.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 235

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 27/226 (11%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           RAL  + Y+  +  DG    G+        L++   +   AI  +L+ +    LEL R +
Sbjct: 18  RALSLEKYVVDWVVDGTEAWGY--------LENQEMQYTLAIFDWLLPELSG-LELLRRL 68

Query: 68  RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           RA+ S +P++ ++    L+  +   D+G DD + KP    E+LARV A+ RR        
Sbjct: 69  RANKSSLPVLMLTAKDRLEDRVAGLDAGADDYLVKPFRMAELLARVRALQRRSPQLQPQQ 128

Query: 119 LKVSNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           L+V +   + G     RV + G   EV     PL  +E ++LEY M +  + V   QI +
Sbjct: 129 LQVGSLTLDCGTRTVYRVAAKGEKQEV-----PLTNKEYQLLEYFMRHPNQVVTSDQIRN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ +  E +  NVV + I  LR+KL +     P+++   +GY ++
Sbjct: 184 QLWEVSAEPL-SNVVAAQIRLLRRKLESIGCAIPIETVHGIGYRLN 228


>gi|149370489|ref|ZP_01890178.1| two-component system response regulator [unidentified eubacterium
           SCB49]
 gi|149356040|gb|EDM44597.1| two-component system response regulator [unidentified eubacterium
           SCB49]
          Length = 188

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 61  LELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           LE+ + IR      +P+I ++   + +  +   DSG DD + KP   +E+LAR+ A  R 
Sbjct: 22  LEVAKKIRQLGFDSLPIIMLTALGTTENIVKGLDSGADDYLIKPFKFKELLARIRARTRT 81

Query: 119 LKVSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + ++ N  +   I   +   D ++    G+   L   E R+LEYLM N  + +++  I  
Sbjct: 82  VGITGNSNQLLQIEDLTLDMDAKIVTRGGQEIKLTSTEFRLLEYLMKNSNRVLSRVDILE 141

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +++ + +  +  NVV+ +++ LR K+  K     + +   +GY
Sbjct: 142 SVWDI-NFNMGTNVVDVYVNYLRNKIDKKFEIKLIHTVIGMGY 183


>gi|149277690|ref|ZP_01883830.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149231378|gb|EDM36757.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 225

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 4/151 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  VL   +  R    V +I   D  SL+  +   + G DD + KP H  E+ AR+ +
Sbjct: 57  GNGLDVLAELKAARKSDNVIIISAKD--SLEDKITGLNMGADDYLVKPFHIAELNARINS 114

Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR  +  N+  E   + +    R   V G+   L R+E  IL YL  N  + V KT +
Sbjct: 115 VLRRKSLDGNQTLELADMYINLSDRVVTVDGKELLLNRKEYDILVYLAVNSSRLVNKTAL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
              ++G   D+A +   + S I  LRKKL++
Sbjct: 175 AEQVWGDYMDQADDYEFMYSQIRNLRKKLKD 205


>gi|313900629|ref|ZP_07834122.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312954691|gb|EFR36366.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 230

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 4/167 (2%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           +E +  I   ++ KGE   +L R IR+ S VP++ +++  S +   + F  G DD + KP
Sbjct: 43  QETIDCIVLDVLLKGESGFDLCRKIRSFSSVPIVFLTNLSSQEDLKNGFLMGADDYITKP 102

Query: 103 IHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
               E+  R+ A  R+     +R +     P+R+  D R  ++Q    PL   E  IL  
Sbjct: 103 FSLEELYLRIQARIRQYYQIPSRQKILNFFPLRINLDARTIQIQDNRVPLTMSEFDILVL 162

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           L          ++I+  ++ + D     + V+ HI+ LRKKL    G
Sbjct: 163 LAQTPEHVYTISEIYQRVWKMPDMN-STHTVQVHIANLRKKLEEAWG 208


>gi|290770079|gb|ADD61842.1| putative protein [uncultured organism]
          Length = 223

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 1/142 (0%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R IR  S+VP+I ++   + +  +   D G DD + KP + +E+L+R++A  RR K
Sbjct: 59  FDICRKIRKLSEVPVIFLTSCDNEEEIVTGLDIGADDYITKPFYTKELLSRISANLRRSK 118

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  + G I V  D       GE   +   E  I+  L+ N+G+ V +  I+  I+ 
Sbjct: 119 FNAGNIYKKGDIVVDFDRYKISRCGEELNISTNEFDIVRILIENKGRVVRREVIYEKIWD 178

Query: 180 LFDEAVEENVVESHISKLRKKL 201
           +    VE N +   +S+++ KL
Sbjct: 179 IHGNFVEYNTLTVAMSRIKAKL 200


>gi|282882486|ref|ZP_06291107.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis
           315-B]
 gi|281297628|gb|EFA90103.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis
           315-B]
          Length = 223

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 94/168 (55%), Gaps = 8/168 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++LE  R     +++  I +S    ++  ++  D G +D ++KP H  E+ AR+ ++ 
Sbjct: 59  GMEILEEFRTFNQDTKI--IILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARIRSLT 116

Query: 117 RRLKVSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR  ++NN+  +     F S  R  ++  +   L R+E  ILEYL+ NRG+ +++ ++  
Sbjct: 117 RRNFITNNQMLSYKNLSFDSKKRIVKIDDKEISLTRKELGILEYLLLNRGRPISQEELID 176

Query: 176 AIYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   D +V+   N +  HIS LRKKL+  L +DP+ ++  LGY ++
Sbjct: 177 HVW---DSSVDLFSNSIRVHISALRKKLKKALKYDPIINRVGLGYQLE 221


>gi|169342185|ref|ZP_02863271.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169299669|gb|EDS81726.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 226

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP+I ++   S    L   + G DD V KP + + +LAR+A+I +R   S
Sbjct: 65  ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123

Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ET       ++      +   + EV  L + E +IL  L+ N+GK V++  I   +
Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFKDEVEELTKNESKILNILIRNKGKIVSRDNIIKTL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   +E +++N +  ++++LR+K+        + +KR  GY
Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223


>gi|126651421|ref|ZP_01723625.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591674|gb|EAZ85770.1| two-component response regulator [Bacillus sp. B14905]
          Length = 233

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    VP+I ++        +   + G DD + KP    E+LAR+ A+ RR K+ +   
Sbjct: 66  IRKFWHVPIIMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVLRRTKIEDKVV 125

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               +R+  +  +   Q E  PL  +E  ++   +  + K  ++  + + ++G +  ++E
Sbjct: 126 VFEGLRLDKESFELYYQQEAIPLTPKEFSMMSLFLDYQNKVFSREHLINTVWG-YHVSIE 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVD 211
           +  ++SH+  LR+KLR K GF P D
Sbjct: 185 DRTIDSHVRNLREKLR-KSGF-PAD 207


>gi|75909659|ref|YP_323955.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703384|gb|ABA23060.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 224

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 14/152 (9%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132
           P+I ++    L   L   + G DD + KP    E++AR+ A+ RR +    N    G ++
Sbjct: 74  PVILLTARNELDDRLAGLNLGADDYIAKPFFVEELVARIHAVVRRSIGDRQNLLVIGTLK 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    R+      V  L  RE  +LEYLM + G+   +TQI   ++G +D     NVV+ 
Sbjct: 134 LDRITREVTCNQRVIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG-YDFNPNTNVVDV 192

Query: 193 HISKLRKKLRNKLGFDPVD------SKRFLGY 218
            I ++RKK+      DPVD      S R +GY
Sbjct: 193 CIQRIRKKI------DPVDEAGWIESIRGVGY 218


>gi|18309822|ref|NP_561756.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110798875|ref|YP_695287.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168212523|ref|ZP_02638148.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168216286|ref|ZP_02641911.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169342523|ref|ZP_02863579.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182625600|ref|ZP_02953370.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|18144500|dbj|BAB80546.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110673522|gb|ABG82509.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169299295|gb|EDS81362.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170715980|gb|EDT28162.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177909152|gb|EDT71623.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182381663|gb|EDT79142.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 222

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 3/158 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IR  S VP+I ++   S    +   + G DD + KP + + +LAR+A++ RR   +
Sbjct: 63  ICREIRKDSNVPIIIVTSRDSDMDEIMSMNLGADDFITKPYNTQVLLARIASLLRRTYSL 122

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S     T G +++         +G+   L + E +IL +L+ N+G  V++  +   ++  
Sbjct: 123 SEQEVLTYGDLKLNLSNGTISCRGKEEELTKNELKILSHLLKNKGNVVSREDLMDYMWN- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            D  V++N +  ++++LRKKL        ++++R LGY
Sbjct: 182 SDIFVDDNTLSVNVTRLRKKLEEVGVKGAIETRRGLGY 219


>gi|228475708|ref|ZP_04060426.1| two-component response regulator [Staphylococcus hominis SK119]
 gi|228270490|gb|EEK11925.1| two-component response regulator [Staphylococcus hominis SK119]
          Length = 221

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 16/220 (7%)

Query: 16  IALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI----- 66
           + +  DD V  E   N L    +  S A++  + +E F   + E VL    LP       
Sbjct: 3   VLIVEDDVVIAESLGNELSHWNYEVSIAKQFGNILEEFKTAEPELVLLDINLPTFNGYHW 62

Query: 67  ---IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LK 120
              IR  S VP+I IS        +     G DD + KP +    +A++ A+ RR   L 
Sbjct: 63  CQEIRKVSNVPIIFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLT 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VSNN       ++  D        +   L   E +IL  L  N GK V +T I    +  
Sbjct: 123 VSNNEITVKGCKLVVDEATLYYNNDSVQLSFTELQILNKLFQNEGKYVNRTAIIEKCWE- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  +++N +  ++++LRKKL++    D +++K+ +GY +
Sbjct: 182 SENFIDDNTLAVNMTRLRKKLQSIGIVDFIETKKNVGYKV 221


>gi|209520678|ref|ZP_03269429.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209498878|gb|EDZ98982.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 220

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LEVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQ 119

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +Y
Sbjct: 120 SGRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G + E +  N VE +I  LRK    KLG D + + R LGY I
Sbjct: 180 G-WGEEIGSNTVEVYIHALRK----KLGADLIRNVRGLGYMI 216


>gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 227

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 81/157 (51%), Gaps = 3/157 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+ +  + VP+I ++   +++  +   D+G +D + KP    E+LAR+    RR    ++
Sbjct: 65  RLRKEGNDVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRRRGSESS 124

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183
           +  TG + V         +     L  +E  +LE+L+ N+G+   +++I   ++ + FD 
Sbjct: 125 KLSTGELTVDPASHQARCESIDLALTPKEFALLEFLLRNKGRVCTRSRIIEHVWDMHFDS 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + +V++ +I+ LRKKL      D + + R +GY I
Sbjct: 185 --DTSVIDVYINFLRKKLDAAGCRDLIQTIRGVGYII 219


>gi|222056601|ref|YP_002538963.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221565890|gb|ACM21862.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 222

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 10/174 (5%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           W+Q+   E +  ++  L GKG   LE+ + IR+ S VP+I I+        L   + G D
Sbjct: 41  WIQAQKPEMI-LLDLMLPGKGG--LEICKEIRSFSSVPIIMITARVEEIDRLLGLELGAD 97

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERR 155
           D + KP   RE++ARV A+ RR       A  G   V  D R    +      L   E +
Sbjct: 98  DYICKPFSPREVVARVKAVLRR--AHGAEAVNGKELVLDDSRYRAMLHDRDLHLTAVEFK 155

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +L  L A+ G+   + Q+   IY      V +  ++SHI KLR+KL    G DP
Sbjct: 156 LLSLLAASPGRIFGRQQLMDHIYP-DQRIVSDRTIDSHIKKLRRKLS---GADP 205


>gi|148550428|ref|YP_001270530.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|167036353|ref|YP_001671584.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|325275137|ref|ZP_08141111.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|148514486|gb|ABQ81346.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166862841|gb|ABZ01249.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
 gi|313501293|gb|ADR62659.1| PhoB [Pseudomonas putida BIRD-1]
 gi|324099745|gb|EGB97617.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 229

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G++ LE E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   S++ A   PI V     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRTGPSDSEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|257469232|ref|ZP_05633326.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063479|ref|ZP_07927964.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689155|gb|EFS25990.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 220

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 25/217 (11%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRII 67
           L+K+GY     +DG V+++ F    F          D+  ++  L  K G  VL   R I
Sbjct: 21  LLKEGYDVTEAEDGEVAIKLFYEKPF----------DLVILDIMLPKKDGWSVL---REI 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-- 125
           + +S VP++ +S     +  L  F+ G D+ + KP +++ +LAR+ A+ +    SNN   
Sbjct: 68  KKYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKALIKN--TSNNTDH 125

Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E G I +        V GE   L  +E  +L YL+ N    +++ ++ + ++G +D  
Sbjct: 126 IIELGKIIINDTSHTVTVDGEEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWG-YDFP 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  +++HI  LRK    KLG + + + R +GY  +
Sbjct: 185 GSDRTIDTHIKNLRK----KLGEECIKTVRGIGYKFE 217


>gi|326204220|ref|ZP_08194080.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985731|gb|EGD46567.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR H+ VP++ ++        L     G DD + KP +  E+ AR+   +RRL+   N  
Sbjct: 70  IRRHTAVPILFLTARSGDLDKLTGLGIGGDDYITKPFNPLEVAARINVQFRRLEQYQNAG 129

Query: 127 ET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +T      GP+ +        V G+  P P +E  +L +L  +  +     Q++  I+G 
Sbjct: 130 QTTEINRFGPVAIDRKAAQLLVDGQEVPCPAKEFELLLFLTDHPNQVFTSGQLYEHIWG- 188

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +D   +E  V  HI +LRKK+
Sbjct: 189 YDSIGDEKTVSIHIMRLRKKI 209


>gi|255527179|ref|ZP_05394064.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186122|ref|ZP_06854527.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509134|gb|EET85489.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049390|gb|EFG88819.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 231

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 25/176 (14%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR   ++P+I +S    +   +   + G DD + KP    E+LARV A  RR    
Sbjct: 63  LIKKIREKYKIPVIVMSAKSEISDKILGLELGADDYITKPCDPLEVLARVKAQLRRCLEF 122

Query: 123 NNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +N  E        G +++++D           P+   E ++L  LM N  K   K QIF 
Sbjct: 123 DNSEEEIVETITIGELKLYTDSCTLYKGSRQVPITSTEYKLLLLLMGNPKKVFTKKQIFE 182

Query: 176 AI-----YGLFDEAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSIDW 222
            I     YG      ++N +  HISKLR K+    +N L    +   R LGY  ++
Sbjct: 183 CIWNEPFYG------DDNTIMVHISKLRDKIEEDSKNPLYLKTI---RGLGYKFEY 229


>gi|251778916|ref|ZP_04821836.1| putative lantibiotic biosynthesis regulatory protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083231|gb|EES49121.1| putative lantibiotic biosynthesis regulatory protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 220

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 3/126 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD + KP    E+ ARV A  RR  +   N      ++ + + ++     E+ P  + 
Sbjct: 93  GGDDYITKPFGISELRARVNAHLRRECREKQNAFYISELKFYINAKEVYHDDELVPFTKS 152

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  I EYL  N G+  +K QI+ +++G FD   +   +  HI  +R KL+ K+G + +++
Sbjct: 153 EYNICEYLALNHGQVFSKEQIYESVFG-FDGRSDTTAIVEHIKNIRSKLK-KIGINTIET 210

Query: 213 KRFLGY 218
              +GY
Sbjct: 211 VWGIGY 216


>gi|217966593|ref|YP_002352099.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217335692|gb|ACK41485.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 220

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 6/155 (3%)

Query: 68  RAHSQVPLIGISDYPSL---QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R   + P +GI    +L   +  ++ F  G DD V KP    E+LAR+ A+ RR +    
Sbjct: 65  RLRDKYPDLGIIMLTALGDVKDKVEAFKLGADDYVVKPFSIEELLARIQAVSRRKEKKEE 124

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 I ++ D     + G+   L + E  +L  L+ N    ++K +I S+I+G +D+ 
Sbjct: 125 IISKHGIELYVDQHRVFIDGKEVELSKTEFSLLYLLLKNENIVLSKEKILSSIWGDYDDE 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             EN+VE +I+ LRKKL  +  +  + + R +GYS
Sbjct: 185 -RENLVEVYINYLRKKLGERGKY--IKTIRGVGYS 216


>gi|311114543|ref|YP_003985764.1| response regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946037|gb|ADP38741.1| response regulator [Gardnerella vaginalis ATCC 14019]
          Length = 250

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +    VP++ ++     Q  +     G DD V KP    E++AR+ AI RR   + +
Sbjct: 75  RIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQD 131

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             E  P+       +  D  D    G    L   E ++L YLM N G+ ++K+QI + ++
Sbjct: 132 PDEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVW 191

Query: 179 GLFDEAVEENVVESHISKLRKK-----LRNKLG-----FDPVDSKRFLGYSI 220
             +D   +  +VES+IS LRKK     ++N+ G        +++KR +GY I
Sbjct: 192 Q-YDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMI 242


>gi|331269514|ref|YP_004396006.1| regulatory protein VanR [Clostridium botulinum BKT015925]
 gi|329126064|gb|AEB76009.1| regulatory protein VanR [Clostridium botulinum BKT015925]
          Length = 226

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 10/207 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLE---FEEWLQSSAREDVSAIEAFLIGKG 57
           + ++ DD+ L K    AL       +EG+  L+   +EE  ++  ++ V  +   +    
Sbjct: 4   ILIVEDDKLLNKGVKFAL------EIEGYTILDTYNYEEGYKAFLKDKVDLVLLDINLPD 57

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E   +L   IR +S++P+I I+   +    +D F+ G DD ++KP     +  R+ A+ R
Sbjct: 58  ESGSKLSMEIRKNSEIPIIFITAKDTESDIIDGFNLGCDDYISKPFSIEVLKQRIKAVLR 117

Query: 118 RLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   V N       I +  +  D +  G    L  +E R+LE L+ N G+ + +  I   
Sbjct: 118 RTNLVENTVFVYEDITIDFNKMDVKKDGISIKLTAKEYRLLELLVKNSGQVLTRRTILEK 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           ++      V+EN +  +I +LRKK+ +
Sbjct: 178 LWDTDGNFVDENALNVNIRRLRKKIED 204


>gi|283455696|ref|YP_003360260.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|306823278|ref|ZP_07456654.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801893|ref|ZP_07696008.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
 gi|283102330|gb|ADB09436.1| Two-component response regulator [Bifidobacterium dentium Bd1]
 gi|304553910|gb|EFM41821.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308221449|gb|EFO77746.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
          Length = 248

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +     P++ ++     Q  +     G DD V KP    E++AR+ AI RR   +  
Sbjct: 76  RIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQE 132

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + E  PI       +  D  D    G+   L   E ++L YLM N G+ ++K QI   ++
Sbjct: 133 QVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP----------VDSKRFLGYSI 220
             +D   +  +VES+IS LRKK+   +  D           +++KR +GY I
Sbjct: 193 Q-YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMI 243


>gi|251778175|ref|ZP_04821095.1| DNA-binding response regulator [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082490|gb|EES48380.1| DNA-binding response regulator [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 227

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 7/163 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RL 119
           L  I +      +I ++    L   L  F+ G +D + KP    E+ AR+ AI +   ++
Sbjct: 63  LSYISKKTLNTGVIILTAKEELGDKLKAFNLGANDYLTKPFFMEELKARIIAILKGMGKI 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K SN   E   +++    +   +  E   L  +  ++LEYL+ N+G  + K QIF  I G
Sbjct: 123 KKSN-ILEFKNMQIDMKVKKVYINNEELELNEKLYKLLEYLVINKGVLLFKEQIFDNICG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              +A  E ++E +IS+LRK+L +K  +D  + +KR +GY +D
Sbjct: 182 YNSDAATE-IIEVYISRLRKQL-SKYNYDKYLVTKRGMGYLLD 222


>gi|228907029|ref|ZP_04070894.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228852620|gb|EEM97409.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 218

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 225

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 9/159 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L + +R+ S +P+I ++        +   + G DD + KP + RE++AR+ A++RR  
Sbjct: 61  LTLCKEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTT 120

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ++  + G I +    +  +  G+   L  +E  +L  L +N GK  +K ++   
Sbjct: 121 TPYVKKHDVIKLGDITINVPDKIVQKNGKDIDLTNKEFELLVLLASNPGKLYSKDKLMDL 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           I+G FD   + N V  HI KLR+K+ +    DP + K  
Sbjct: 181 IWG-FDFYGDTNTVNVHIRKLREKIED----DPANPKHI 214


>gi|254038194|ref|ZP_04872252.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43]
 gi|226839818|gb|EEH71839.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43]
          Length = 219

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---RKWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|182413658|ref|YP_001818724.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840872|gb|ACB75124.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 216

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 23/228 (10%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNS-----LEFEEWLQSSAREDVSAIEAFLIG 55
           + V+ DD  L+ +   AL G++G +++G ++      + E W   +   DV   E     
Sbjct: 3   LLVVEDDPDLLANLLKAL-GEEGYAVDGADTGPEGLFKAESWDYDAIVLDVMLPEL---- 57

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G  +L+    +R   + P++ ++   + Q  +   D G DD + KP    E+ AR+ A+
Sbjct: 58  DGWTLLQR---LRRTKRTPVLMLTARDATQDRVRGLDIGADDYLTKPFDLPELCARLRAL 114

Query: 116 YRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR     + R   G + +    R    +G   PL   E  ++E+L  +RG+ V++T ++
Sbjct: 115 IRRSCGEVHPRLALGDLVIDQTARTVTCKGATVPLTATEYALIEFLALHRGQVVSRTTLY 174

Query: 175 SAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                LFDEA +   N+++ H++ +R+    K+G D + ++R  GY I
Sbjct: 175 EH---LFDEAHDSLSNLLDVHVAHVRR----KIGRDVIVTRRGHGYLI 215


>gi|126652889|ref|ZP_01725032.1| DNA-binding response regulator [Bacillus sp. B14905]
 gi|126590309|gb|EAZ84430.1| DNA-binding response regulator [Bacillus sp. B14905]
          Length = 233

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + VL D+RA+ +   I L  +   S+   N++E  +    +   D   ++  L  G G  
Sbjct: 6   ILVLEDERAIAEMIDIILRKEGMTSITVCNTIEAAKSEIYAKTFDFYLLDIMLPDGSG-- 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115
            LE+  IIR  S  P+  ++   S    L  F +G DD + KP +  E++ARV    A  
Sbjct: 64  -LEVAHIIREKSDAPIFYLTAKSSDADKLRGFMNGADDYITKPFNPLELVARVKVQLARY 122

Query: 116 YRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++ +V+ N   T     F  D  +  V G    +  R   +L+YL  N G+ ++K QI+
Sbjct: 123 MKKKQVTENHLFTCSRFTFDIDAAEITVDGVREIISGRLFHLLKYLCDNAGQVLSKEQIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             ++G  D   ++N V  HI KLR+K+    G    + + R +GY +
Sbjct: 183 ERVWG--DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYKL 227


>gi|300855471|ref|YP_003780455.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435586|gb|ADK15353.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 220

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 61  LELPRIIRAHSQVPLIGIS---DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            EL + IR+    P+I ++   D  S+   L F   G DD ++KP    E+ ARV A  R
Sbjct: 60  FELCQKIRSTVDSPIIFLTAKTDESSIVKGLAF---GGDDYISKPFGVMELNARVEAYLR 116

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R     S  +   G I +  D ++  V   V    + E  I E+L  NRGK   K  IF 
Sbjct: 117 RENRGKSTKKLVYGDITIDFDKKEILVNNNVIAFTKNEYNICEFLALNRGKVFTKQAIFE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           AIY L D   + +V+  +I  +R K +    F P+++   +GY
Sbjct: 177 AIYDL-DSDTQFSVITEYIRLIRNKFKEYNCF-PIETVWGVGY 217


>gi|291286979|ref|YP_003503795.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884139|gb|ADD67839.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 227

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 19/174 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +LE  R   A    P++ ++    +   +   D G DD + KP    E+LARV A+ 
Sbjct: 59  GFCILEAVR--EASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALL 116

Query: 117 RR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           RR        LKV++    T    V  DG  P        L R+E  + EYL+ N+ + V
Sbjct: 117 RRDNLDKNPFLKVADIVLNTVSCDVVKDGH-P------LKLTRKEYMVFEYLLYNKNRVV 169

Query: 169 AKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            K  +   ++G  FDE    N ++ HI  LRKK+ ++     + +KR +GY I+
Sbjct: 170 TKAALAGHVWGDEFDEFNASNFIDVHIKNLRKKIGDENHL-IIRTKRGIGYIIN 222


>gi|289167698|ref|YP_003445967.1| response regulator [Streptococcus mitis B6]
 gi|288907265|emb|CBJ22100.1| response regulator [Streptococcus mitis B6]
          Length = 224

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G I V       +V+     L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  ++G FD     +VVE ++SK+RKKL+     + 
Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LKTLRSVGY 218


>gi|187777082|ref|ZP_02993555.1| hypothetical protein CLOSPO_00627 [Clostridium sporogenes ATCC
           15579]
 gi|187774010|gb|EDU37812.1| hypothetical protein CLOSPO_00627 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S++P+I IS   S    +   ++G DD + KP +   I+A++ +  RR      
Sbjct: 66  RKIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K+     E   ++ + +  + E + E   + ++E  +LEYLM    K V +  +   I+
Sbjct: 126 PKIDEKIVELQGLKFYKERSEIEFEDESVIITKKEGILLEYLMKKYPKVVNRDFLLEKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
               E VEEN +  ++S++RK+L +KLG  D +++ R +GY ++
Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HKLGIEDGIETVRGVGYRLN 227


>gi|123440802|ref|YP_001004793.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087763|emb|CAL10549.1| two-component system response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 219

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 80/155 (51%), Gaps = 6/155 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR +  S+N  
Sbjct: 68  RQHITLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQGQSDNLI 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +   + +    +   +QG+   +  +E  IL  L+   G+ V +  +   +Y   D+ + 
Sbjct: 128 QQDDLSLNLSTQQVCLQGQALEVTPKEFAILSRLIMRAGQTVNRELLQQDLYTWNDD-LG 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            N +E HI  LR+    KLG D + + R +GY ++
Sbjct: 187 SNTLEVHIHNLRR----KLGKDRIRTVRGIGYRLE 217


>gi|325124170|gb|ADY83693.1| DNA-binding response regulator CreB [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 240

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 15/174 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + +R  SQ PL+ ++        +   + G DD   KP   REI+AR+ AI+RR++
Sbjct: 64  FEVCKQLRQKSQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRME 123

Query: 121 VS----------NNRAETGPIRVFS-DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKR 167
           V           +  A   P  ++S + +  ++Q  G+   L R E R+L  L+ +  + 
Sbjct: 124 VQIQSNSSQNPISQAAIVAPSSIWSCNPQSLQIQYHGKSLQLTRYEYRLLFLLIQHPEQV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++ Q+   I+   + ++ E  V++HI  LR+KL+      DP+ + R  GYS+
Sbjct: 184 FSRQQLMDHIWEHPEHSL-ERTVDTHIKSLRQKLKQITPDNDPIRTHRGFGYSL 236


>gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
 gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
          Length = 222

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 7/163 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + ++IR  S VP+I ++        L  F+   DD + KP     ++ RV AI RR    
Sbjct: 64  VCKMIRKTSSVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAILRRSNKT 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +S+N      +++  D    E+ G+V  L  +E  IL+ L+    + + +  +  +I+G 
Sbjct: 124 ISDNFITFEKLKLNLDTYSAEIDGDVIELTLKEFNILKELIEKYPQVITRESLLDSIWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D   +  +V++HI  +RKK+        + + + +GY++D N
Sbjct: 183 YDYYGDTRIVDAHIKNIRKKIT----LPYIKTVKGIGYTLDKN 221


>gi|26991996|ref|NP_747421.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24987128|gb|AAN70885.1|AE016732_10 DNA-binding response regulator PhoB [Pseudomonas putida KT2440]
          Length = 242

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G++ LE E   Q+ A     + D+  ++  L   
Sbjct: 19  ILIVDDEAPIRE-MIAV----ALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--P 71

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 72  GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 131

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   S++ A   PI V     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 132 AVLRRTGPSDSEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 188

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 189 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 220


>gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 220

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 15/166 (9%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LDVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + R+++  IR+ +   DP      + G    L  RE  +LE L+A  G  ++K+Q+ 
Sbjct: 119 --QSGRSDS-TIRLGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +YG + E +  N VE +I  LRK    KLG D + + R LGY I
Sbjct: 176 EKMYG-WGEEIGSNTVEVYIHALRK----KLGADLIRNVRGLGYMI 216


>gi|227517846|ref|ZP_03947895.1| response regulator [Enterococcus faecalis TX0104]
 gi|229546771|ref|ZP_04435496.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|229548862|ref|ZP_04437587.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255971376|ref|ZP_05421962.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256617795|ref|ZP_05474641.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256761680|ref|ZP_05502260.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256854231|ref|ZP_05559595.1| response regulator [Enterococcus faecalis T8]
 gi|256957218|ref|ZP_05561389.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256964254|ref|ZP_05568425.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257077810|ref|ZP_05572171.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257081169|ref|ZP_05575530.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|257083837|ref|ZP_05578198.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086263|ref|ZP_05580624.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089336|ref|ZP_05583697.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257415488|ref|ZP_05592482.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257421170|ref|ZP_05598160.1| two component system response regulator [Enterococcus faecalis X98]
 gi|294780513|ref|ZP_06745876.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|307268001|ref|ZP_07549389.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307271926|ref|ZP_07553194.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307286734|ref|ZP_07566820.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307290942|ref|ZP_07570832.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312904486|ref|ZP_07763645.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312952807|ref|ZP_07771669.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|227074689|gb|EEI12652.1| response regulator [Enterococcus faecalis TX0104]
 gi|229305883|gb|EEN71879.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229308120|gb|EEN74107.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|255962394|gb|EET94870.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256597322|gb|EEU16498.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256682931|gb|EEU22626.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256709791|gb|EEU24835.1| response regulator [Enterococcus faecalis T8]
 gi|256947714|gb|EEU64346.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256954750|gb|EEU71382.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256985840|gb|EEU73142.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256989199|gb|EEU76501.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|256991867|gb|EEU79169.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994293|gb|EEU81595.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998148|gb|EEU84668.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257157316|gb|EEU87276.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257162994|gb|EEU92954.1| two component system response regulator [Enterococcus faecalis X98]
 gi|294452340|gb|EFG20779.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|295113884|emb|CBL32521.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|306498012|gb|EFM67539.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306502212|gb|EFM71496.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306511432|gb|EFM80434.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306515642|gb|EFM84169.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310629323|gb|EFQ12606.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310632184|gb|EFQ15467.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|315027111|gb|EFT39043.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315029796|gb|EFT41728.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315032445|gb|EFT44377.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315034321|gb|EFT46253.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315149686|gb|EFT93702.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315152998|gb|EFT97014.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315155229|gb|EFT99245.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315157556|gb|EFU01573.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315165214|gb|EFU09231.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315172028|gb|EFU16045.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315577292|gb|EFU89483.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|323480106|gb|ADX79545.1| response regulator [Enterococcus faecalis 62]
 gi|327534506|gb|AEA93340.1| response regulator [Enterococcus faecalis OG1RF]
 gi|329577924|gb|EGG59345.1| response regulator protein GraR [Enterococcus faecalis TX1467]
          Length = 224

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS   +    +   + G DD V KP     ++A++ A+ RR   S N +
Sbjct: 67  IREVSKVPIIFISSRSTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRR---SYNYS 123

Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +T         I +  D    E++GE+  L + E R+L  LM   GK + + ++  A++ 
Sbjct: 124 DTDSEVLSHNGITLNVDNGRMEIKGEMIDLSKNEYRLLYLLMKKHGKILTREKLLRALWD 183

Query: 180 LFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  V++N +  +I++LRKK+        +++K  +GY +
Sbjct: 184 --DERFVDDNTLTVNINRLRKKIEQAGIAGYIETKVGVGYMV 223


>gi|226325419|ref|ZP_03800937.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
 gi|225206162|gb|EEG88516.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
          Length = 235

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +  R IR  S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 74  QTCREIRKESKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVTAILRRTNA 133

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++      I +       ++ G+   L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 134 LASDDLLHADGIEIDKAAHMVKIDGKPIELSYKEFELLTYFVENQGIALSREKILNNVWN 193

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL +K
Sbjct: 194 -YDYFGDARTIDTHVKKLRSKLGDK 217


>gi|16077443|ref|NP_388257.1| two-component response regulator YclK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308189|ref|ZP_03590036.1| hypothetical protein Bsubs1_02118 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312511|ref|ZP_03594316.1| hypothetical protein BsubsN3_02104 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317448|ref|ZP_03598742.1| hypothetical protein BsubsJ_02123 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321710|ref|ZP_03603004.1| hypothetical protein BsubsS_02134 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396952|sp|P94413|YCLJ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yclJ
 gi|1805445|dbj|BAA09007.1| yclJ [Bacillus subtilis]
 gi|2632676|emb|CAB12183.1| two-component response regulator [YclK] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 227

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 19/200 (9%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           K+G+ A F  DG  LEG+     E W       D+  ++  L       + + R IR  S
Sbjct: 22  KEGFEAEFVHDG--LEGYQRFTEENW-------DLIILDIMLPSMDG--VTICRKIRETS 70

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNR 125
            VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR K      +  + 
Sbjct: 71  TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKATGKAVIDEDM 130

Query: 126 AETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            ET    +    R+  + GE V  L  +E  +L YL+ N  +  ++ Q+   ++G +   
Sbjct: 131 IETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLLEQVWG-YQFY 189

Query: 185 VEENVVESHISKLRKKLRNK 204
            +E  V+ HI +LRKKL ++
Sbjct: 190 GDERTVDVHIKRLRKKLASE 209


>gi|291618073|ref|YP_003520815.1| BaeR [Pantoea ananatis LMG 20103]
 gi|291153103|gb|ADD77687.1| BaeR [Pantoea ananatis LMG 20103]
 gi|327394471|dbj|BAK11893.1| transcriptional regulatory protein BaeR [Pantoea ananatis AJ13355]
          Length = 235

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 2/152 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G+  L L R IR  S++P+I ++        L   + G DD V KP   RE++ARV
Sbjct: 59  LMLPGKDGLTLCREIRRDSELPIIMVTARTEEIDRLLGLEIGADDYVCKPFSPREVVARV 118

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             I RR+K S   A    +    + R     + E   L   E R+L+ L    GK  ++ 
Sbjct: 119 KTILRRVKRSPEDAPVASLLKVHESRFQASWRDEPLDLTPAEFRLLKTLSLEPGKVFSRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           Q+ + +Y  +   V +  ++SHI  LR+KL N
Sbjct: 179 QLLNHLYDDY-RVVTDRTIDSHIKNLRRKLEN 209


>gi|228964356|ref|ZP_04125473.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795340|gb|EEM42830.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 218

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|126665458|ref|ZP_01736440.1| probable two-component response regulator [Marinobacter sp. ELB17]
 gi|126630086|gb|EBA00702.1| probable two-component response regulator [Marinobacter sp. ELB17]
          Length = 228

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 15/171 (8%)

Query: 61  LELPRI----IRAHS-----QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L LPR+    I  H+     Q+P+I ++    L+  L   D+G DD + KP    E+ AR
Sbjct: 52  LTLPRVDGLDIVRHTRQQGNQLPIIILTARAELEEKLQGLDAGADDYLTKPFAMAELKAR 111

Query: 112 VAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ RR   +N ++   G + +               LPR E +IL+Y+M +  +   +
Sbjct: 112 IRAVTRRRSSTNGDQLIVGQLTLDPASAQLTCGTGTATLPRSEFQILQYMMRHPDQVATR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   +YG ++   E N +E HI  LR+    ++G   + + R +GY +D
Sbjct: 172 RRLEEQLYG-WEPGAESNALEVHIHHLRR----RVGKATIRTIRGVGYFLD 217


>gi|15894830|ref|NP_348179.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024503|gb|AAK79519.1|AE007665_6 Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325508968|gb|ADZ20604.1| Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 227

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 96/190 (50%), Gaps = 19/190 (10%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           Y    G DG+ L  F  ++F+  +      D+          GE   E+ RI+R  S V 
Sbjct: 29  YCTTQGLDGIEL--FKKVKFQLVILDLMLPDID---------GE---EVCRILRRISDVY 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA-ETGPIR 132
           +  ++   +L+  ++  + G D+ + KP   RE+ ARV A++RR+ K  NN   + G ++
Sbjct: 75  IFILTAKVALKDRIEGLNMGADEYLLKPCSPRELTARVNALFRRVFKDENNTDFDDGNLQ 134

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191
           + SD R   ++ +   L   E  IL  L+ N+G+ +++ Q+   ++GL FD    +  ++
Sbjct: 135 ICSDKRIVRIKDQQISLTPNEFDILYALVLNKGRVLSREQLIERVFGLDFDGF--DRTID 192

Query: 192 SHISKLRKKL 201
            HI  +RKK+
Sbjct: 193 VHIKNIRKKI 202


>gi|300715798|ref|YP_003740601.1| two component transcriptional regulator, winged helix family
           [Erwinia billingiae Eb661]
 gi|299061634|emb|CAX58749.1| Two component transcriptional regulator, winged helix family
           [Erwinia billingiae Eb661]
          Length = 222

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 22/163 (13%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           + +PL+ I+   +L+  L   D+G DD V  P      LAR+ A+ RR          GP
Sbjct: 71  NMLPLLIITARDALEDRLRGLDAGADDFVIAPFDMTAWLARIRAVMRR-----KEGHCGP 125

Query: 131 IRVFSDG---RDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             V S+G    DP         +GEV+ L  RE  +L+ L+   G  ++++++   IYG 
Sbjct: 126 --VLSNGIIRLDPASHEACDVEKGEVYRLSNREFALLQALLIRPGTLLSRSELEEKIYG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + E +E N VE  I  LRKK  +K     + + R +G+ +  N
Sbjct: 183 WGEEIESNAVEFFIHALRKKFGSK----AIKNVRGVGWKVSGN 221


>gi|317132092|ref|YP_004091406.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470071|gb|ADU26675.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 230

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 15/169 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  S VP++ ++        ++  DSG DD + KP    E+LAR+ A  R   
Sbjct: 63  VEVCRNVRLFSSVPILMLTAKGETVDKVEGLDSGADDYITKPFQMEELLARMRAALR--- 119

Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIF 174
             N+     P+ V  +   DP             L +RE  +LEY+M NR   + + QI 
Sbjct: 120 -GNDSPGQTPLLVVQNLTLDPFKHTVCRDDTEIELTKREFDLLEYMMRNRSIVLTRGQIL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
             ++G   E  E N+V+ +I  LR K+ +   F+P  + + R +GY +D
Sbjct: 179 DHVWGETYEG-EANIVDVYIRYLRGKMDD--AFEPKLLHTVRGVGYVLD 224


>gi|254519629|ref|ZP_05131685.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913378|gb|EEH98579.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 223

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 86/161 (53%), Gaps = 11/161 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I +S   S    +   ++G DD + KP     ++ ++ A+ RR   S +  
Sbjct: 67  IREISKVPIIFLSSRDSNMDLIMGINNGGDDYITKPFSIEVLITKINALLRR---SYDYT 123

Query: 127 ETGPIRVFSDG-RDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +  + D   D E      +  +  L + E +IL  L+ N+GK V++ +I  +++  
Sbjct: 124 FSDSVIYYKDTILDMEKCTFKYEDNIIELTKNEMKILSILIKNKGKVVSRDKIMMSLWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            DE V +N +  ++++LR +L+++LG  D + +K+ +GY I
Sbjct: 183 DDEFVSDNTLTVNVTRLRGRLKDELGLNDFIKTKKGIGYMI 223


>gi|39937875|ref|NP_950151.1| two-component transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39651735|emb|CAE30257.1| two-component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris CGA009]
          Length = 221

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 18/215 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L + GY+A    DG           E W +    ED +AI   L   G   L + +  
Sbjct: 18  RGLGEAGYLAEIVGDG----------EEAWFRGDT-EDYAAIILDLGLPGLDGLTILKRW 66

Query: 68  RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R + ++ P++ ++   S    +D  D+G DD + KP    E+LAR+ +I RR     +  
Sbjct: 67  RDNGRLTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSAGHASSV 126

Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            T G + +        V G+   L   E R+  YL+ +RG+ V++ ++   IYG  D+A 
Sbjct: 127 VTIGEVTLDERQMQVSVGGKPVSLSPLEYRLASYLVLHRGRVVSQYELAENIYGQ-DDAH 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + ++R+    K+G D ++++R  GY +
Sbjct: 186 DSNAIEVLVGRVRR----KIGADLIETRRGFGYIV 216


>gi|120596934|ref|YP_961508.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120557027|gb|ABM22954.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
          Length = 231

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 8/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129
           P++ ++   S Q  ++  D+G DD + KP H +E++AR+ A+ RR   S  +A      G
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRR---SAGKASPLVYNG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  + +   +     E+  L   E ++ E+LM + G+  +KT +   IY   D  ++ NV
Sbjct: 131 PFSLNTSSLEIRKGDELINLSGSEYKLFEFLMLHPGEVKSKTVLTEHIYDQ-DFDLDSNV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E  I +LRKKL     ++ +++ R  GY +
Sbjct: 190 IEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|315646765|ref|ZP_07899880.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277695|gb|EFU41019.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 232

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 8/141 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR +S VP++ ++   S    +     G DD + KP    E++ARV ++ RR    N+R 
Sbjct: 70  IRKYSNVPVLMLTAKGSEPDKVTGLSLGADDYLTKPFSINELIARVQSLIRRYTTFNSR- 128

Query: 127 ETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++  I +F       + R   V+ ++  L  +E  +L +L +N+G+   K QI++ ++  
Sbjct: 129 DSVSILIFKGIVIDKEIRTVHVEDKLIDLTGKEFDLLVFLASNKGRVFTKKQIYTQVWN- 187

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D + ++N + S ISKLRKK+
Sbjct: 188 DDYSFDDNNIMSFISKLRKKI 208


>gi|262278413|ref|ZP_06056198.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258764|gb|EEY77497.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
          Length = 220

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GEKVL   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  
Sbjct: 59  GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116

Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R+  +S     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  
Sbjct: 117 RKQTLSQQSVLTWGNLQLDTQAKVVSCAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A+Y  + E +E N +E  I +LRK    K+G   + + R LGY +
Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216


>gi|149377172|ref|ZP_01894921.1| two component transcriptional regulator, winged helix family
           protein [Marinobacter algicola DG893]
 gi|149358590|gb|EDM47063.1| two component transcriptional regulator, winged helix family
           protein [Marinobacter algicola DG893]
          Length = 228

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 13/167 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA + +P++ ++        +  F+ G DD + KP + RE++AR+ A+ RR+ 
Sbjct: 62  LEVLRQLRAKTHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELIARLQALLRRVA 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 + ++RA  G +RV    R          L   E  +L+ L+A+ G  V KT + 
Sbjct: 122 WDQEVGMDDSRA-YGDLRVEPVHRRIYQNDVALDLTATEYEVLQVLLAHAGSVVRKTDLM 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYS 219
               G   EA +   ++ HIS LRKKL N    DP  +++ R LGYS
Sbjct: 181 QWALGRRLEAYDRT-LDMHISNLRKKLGND---DPPRIETVRGLGYS 223


>gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 241

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 14/165 (8%)

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA    +P++ ++    ++  ++   +G DD V KP    E++AR+ AI RR K S 
Sbjct: 73  RKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKRSA 132

Query: 124 NRAETGPIRVFS---DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              E   +RV     D    EV   G +  L   E ++L YLM N G+ V+KTQI   ++
Sbjct: 133 --VEQPLLRVADLELDDNLYEVHRGGRLIDLSPTEFKLLRYLMVNEGRVVSKTQILDHVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLR--NKLGFDP---VDSKRFLGY 218
             +D   +  +VES+IS LR+KL   ++ G  P   + ++R +GY
Sbjct: 191 E-YDWEGDAAIVESYISYLRRKLDAPDETGSIPPSLIQTRRGVGY 234


>gi|154687499|ref|YP_001422660.1| SpaR [Bacillus amyloliquefaciens FZB42]
 gi|154353350|gb|ABS75429.1| SpaR [Bacillus amyloliquefaciens FZB42]
          Length = 220

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +EL R IR     P++ ++     ++ +    +G DD + KP   +E++ARV A  
Sbjct: 56  GTDGIELCRRIRPLVDSPILFLTAKSDEESIVKGLMTGADDYITKPFGVQELMARVNAHV 115

Query: 117 RRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR    K    R  +G +  F D ++  +     PL + E +I+E L  ++ +  ++ QI
Sbjct: 116 RRERREKHQTKRLISGFMFDF-DNKEVWIDDRKLPLTKNEYKIVECLAQHKNRTFSREQI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  +YGL  +A+   + E  I  +RKK +   G DP+ +   +GY 
Sbjct: 175 YEEVYGLDGDALYSTITE-FIRTIRKKCKEH-GADPIKTVWGVGYK 218


>gi|297193586|ref|ZP_06910984.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151835|gb|EFH31368.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 184

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 59  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 178 YG 179
           +G
Sbjct: 179 WG 180


>gi|171743333|ref|ZP_02919140.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
 gi|171278947|gb|EDT46608.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
          Length = 243

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +     P++ ++     Q  +     G DD V KP    E++AR+ AI RR   +  
Sbjct: 71  RIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQE 127

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + E  PI       +  D  D    G+   L   E ++L YLM N G+ ++K QI   ++
Sbjct: 128 QVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP----------VDSKRFLGYSI 220
             +D   +  +VES+IS LRKK+   +  D           +++KR +GY I
Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMI 238


>gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 244

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 28/155 (18%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR------------------LKVSNNRAETGPIR 132
            + G DD V KP   RE+LARV A+ RR                   + +N     GP+R
Sbjct: 95  LEVGADDYVTKPFGRRELLARVRALIRRSDYVPGGEGENGEEPEQERRSANRELVAGPLR 154

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +   GR    +G+   L  ++  +L YL+ NRG  + + Q+   ++G +D   +   V+ 
Sbjct: 155 IDLAGRRVNCRGQDIELQPKQFELLAYLVRNRGTVLTRDQLLHNVWG-YDYVGDTRTVDV 213

Query: 193 HISKLRKKLRNKLGFDPVDSK-----RFLGYSIDW 222
           H+  LR+KL      DP + K     R +GY   W
Sbjct: 214 HVRWLREKLEE----DPANPKLIQTVRGVGYVFRW 244


>gi|312115104|ref|YP_004012700.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220233|gb|ADP71601.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 236

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 20/172 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA      +P++ ++        +     G DD V KP    E+LARV AI R
Sbjct: 62  IELCRRLRAGKTARTIPILLLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAILR 121

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         L+V +   +    RV   GR+  +    F       ++LE+LM + G+  
Sbjct: 122 RAAPERISQTLEVEDIELDRETYRVMRSGREVRLGPTEF-------KLLEFLMESPGRVF 174

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++TQ+   ++G  D  V+E  V+ HI +LRK +      DP+ + R  GY++
Sbjct: 175 SRTQLLDGVWG-RDVYVDERTVDVHIGRLRKAINRGKEKDPIRTVRGAGYAL 225


>gi|260463371|ref|ZP_05811572.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259030961|gb|EEW32236.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 225

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 13/148 (8%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R++RA  ++VP+I ++   SL   +   + G DD + KP    E+ AR+    RR 
Sbjct: 60  MEVLRMLRARGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRVQLRR- 118

Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +N+R  T P+    D       R   + GE   L  RE  +LE LM   G+ V+K  +
Sbjct: 119 --ANDR--TAPMITCGDLVFDTNTRLFSLAGETLALTPREHAVLEQLMVKAGRTVSKAAL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            +AIY  F+   + + +E ++ ++RKKL
Sbjct: 175 SAAIYD-FETDADPSAIEIYVHRVRKKL 201


>gi|215488353|ref|YP_002330784.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|331684666|ref|ZP_08385258.1| transcriptional regulatory protein QseB [Escherichia coli H299]
 gi|215266425|emb|CAS10863.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O127:H6 str. E2348/69]
 gi|331078281|gb|EGI49487.1| transcriptional regulatory protein QseB [Escherichia coli H299]
 gi|332086683|gb|EGI91823.1| transcriptional regulatory protein qseB [Shigella boydii 5216-82]
          Length = 219

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSIDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|254426949|ref|ZP_05040656.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196193118|gb|EDX88077.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 220

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 104/234 (44%), Gaps = 35/234 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA-----IEAFLIGK 56
            +LI+D AL+ DG  A          G  ++ F     + ARE ++A      +A ++  
Sbjct: 3   ILLIEDDALLGDGIQA----------GLQAMGFTVAWVTRAREGLAAWKSVEFDALVLDL 52

Query: 57  G----EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           G    +    L +   A    P++ ++   ++Q  +D    G DD + KP    E+ AR+
Sbjct: 53  GLPDQDGGQALCQWRDAGLTAPVLILTARDAVQDRIDGLQRGADDYLVKPFDLGELAARL 112

Query: 113 AAIYRRLK------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR +      + + R    P R      D EV+     L RRE  +L  L+ +RG+
Sbjct: 113 QALLRRSRGQASPLIEHGRVRVDPFRQQVWLADQEVE-----LQRREMALLLALLQSRGR 167

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   Q+   +YG  D  VE N +  HI  LR+    KLG   V++ R  GY +
Sbjct: 168 LLTPDQLADRVYGWVD-GVESNALAVHIHNLRR----KLGSGIVETVRGGGYRL 216


>gi|121602270|ref|YP_988746.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583]
 gi|120614447|gb|ABM45048.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583]
          Length = 221

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP +  E++AR+ A+ RR       A   G + + +      V G++  L
Sbjct: 91  IDAGADDYVVKPFYLEEVMARLRALIRRASGHATSALSCGAVLLDTKTSRVFVDGQLIKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM +  K V++T++   +Y   FD   + N +E  + +LRK    KLG D
Sbjct: 151 TSHEFRLLSYLMHHCDKVVSRTELIEHLYDQDFDR--DSNTIEVFVRRLRK----KLGVD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R +GY +
Sbjct: 205 FIETIRGMGYRV 216


>gi|116751092|ref|YP_847779.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700156|gb|ABK19344.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 263

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 3/131 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ +S   S+   +   + G DD + KP    E+LARV ++ RR KV+    +     
Sbjct: 104 TPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSKVNQETVQLKAGD 163

Query: 133 VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           ++ D     V    E F L  +E  +LEYLM N+G+ V + +I   ++G ++     NVV
Sbjct: 164 LWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVWG-YNFVPATNVV 222

Query: 191 ESHISKLRKKL 201
           E HI +LR+KL
Sbjct: 223 EVHICRLREKL 233


>gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 233

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F  D    +   + + EE L     E    I   L+      L
Sbjct: 4   ILVVDDEKPISD--IVKFNLDKEGYDVVTAYDGEEALAQVEEEKPDLILLDLMLPKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +RA   +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVARQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   N  + GP+ + SD       G    L  RE  +L YL  + G+ + +  + 
Sbjct: 122 LQQDDETVKNNIKIGPLVINSDSYSVTRDGMQLDLTHREFELLHYLAQHTGQVMTREHLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+    G   +  ++R +GY +
Sbjct: 182 QTVWG-YDYFGDVRTVDVTVRRLREKIEETPGNPQILVTRRGVGYYL 227


>gi|227890585|ref|ZP_04008390.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299690|ref|ZP_07205943.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|227867523|gb|EEJ74944.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300214343|gb|ADJ78759.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
 gi|300852702|gb|EFK80333.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 228

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 10/189 (5%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+ +  ED  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 38  LELALDEDWDAILLDLMLPELNGLEVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSN----NRAETGPIRVFSDGRDPEV---QGEVFPLP 150
            + KP    E+LAR+ A+ RR+++ N    N+  T   R  +  ++  V     E+  L 
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVELENEQNGNKQTTLTYRDLTIEKENRVVRRGDEIIELT 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP- 209
           +RE  +L  LM N    +A+  +   ++G ++  +E NVV+ +I  LR K+ ++ G D  
Sbjct: 158 KREYELLLTLMENINVVLARDTLLKKVWG-YETQIETNVVDVYIRYLRNKI-DRPGEDSY 215

Query: 210 VDSKRFLGY 218
           + + R  GY
Sbjct: 216 IQTVRGTGY 224


>gi|192293660|ref|YP_001994265.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|192287409|gb|ACF03790.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 221

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 18/215 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L + GY+A    DG           E W +    ED +AI   L   G   L + +  
Sbjct: 18  RGLGEAGYLAEIVGDG----------EEAWFRGDT-EDYAAIILDLGLPGLDGLTILKRW 66

Query: 68  RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R + ++ P++ ++   S    +D  D+G DD + KP    E+LAR+ +I RR     +  
Sbjct: 67  RDNGRLTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSAGHASSV 126

Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            T G + +        V G+   L   E R+  YL+ +RG+ V++ ++   IYG  D+A 
Sbjct: 127 VTIGEVMLDERQMQVSVGGKPVSLSPLEYRLASYLVLHRGRVVSQYELAENIYGQ-DDAH 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N +E  + ++R+    K+G D ++++R  GY +
Sbjct: 186 DSNAIEVLVGRVRR----KIGADLIETRRGFGYIV 216


>gi|186686379|ref|YP_001869575.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468831|gb|ACC84632.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 232

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 18/200 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L ++GYI     DG            E+ Q+ +  D+  ++  L GK    LE+ + +
Sbjct: 18  RLLTREGYIVDAAFDGTI--------GSEYAQAGSY-DLLILDWMLPGK--TGLEICQQL 66

Query: 68  RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R   +  P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR        
Sbjct: 67  RRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSGSQTYET 126

Query: 127 ETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            TG + V     D E      QG +  L ++E ++L+Y M + G+ +   QI   ++   
Sbjct: 127 TTGRLTVADLELDCENQVAYRQGRIIELSQKESQLLQYFMEHTGQLMTHAQIMENLWQ-E 185

Query: 182 DEAVEENVVESHISKLRKKL 201
           +E    NV+ + I  LR+K+
Sbjct: 186 EEQPSSNVIAALIRLLRRKI 205


>gi|312867423|ref|ZP_07727632.1| putative sensory transduction protein RegX3 [Streptococcus
           parasanguinis F0405]
 gi|311097124|gb|EFQ55359.1| putative sensory transduction protein RegX3 [Streptococcus
           parasanguinis F0405]
          Length = 217

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP + ++ +      L  F    D  + KP     +  R+ AI+++L+
Sbjct: 60  LEVLKTIRKTSSVPGLMLTAFHDEDYKLTAFGELADGYLEKPFSLSLLKVRIEAIFKKLQ 119

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  R  T G  RV  +     + G+   +  +E  ILEYL+ + GK   ++QI  A++ 
Sbjct: 120 PS--RVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215


>gi|331674568|ref|ZP_08375328.1| transcriptional regulatory protein QseB [Escherichia coli TA280]
 gi|331068662|gb|EGI40057.1| transcriptional regulatory protein QseB [Escherichia coli TA280]
          Length = 219

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDTVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|326317102|ref|YP_004234774.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373938|gb|ADX46207.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 230

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 5/169 (2%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   L+L + +RA   QVP++ ++   S++  +     G DD + KP    E+LAR+ A+
Sbjct: 59  GMTGLDLCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEAL 118

Query: 116 YRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            RR +    RA   +   + +  +       G    L  +E   LE LM+  G+  ++ +
Sbjct: 119 LRRGREQRPRATRLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRER 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I S ++G+ ++ +  NVV+ ++ +LR K+        + + R LGY +D
Sbjct: 179 ILSNVWGMHEDPL-TNVVDVYVRRLRSKIDEGHPLALLKTVRGLGYRLD 226


>gi|258545920|ref|ZP_05706154.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
 gi|258518798|gb|EEV87657.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
          Length = 225

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 9/158 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNN 124
           +R ++  P++ ++    L + L   D G DD + KP    E+LAR+ A+ RR     +NN
Sbjct: 66  LRQNAATPVLILTARDDLDSRLRGLDGGADDYLIKPFELAELLARMRAVLRRHGQHSANN 125

Query: 125 RAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             + G I +     +      GE   L  RE  IL  LM   G  +++ ++    YG + 
Sbjct: 126 ELDNGIITLNPATHEARRHDNGETRQLTAREYTILHALMQRPGHILSRAELEDKTYG-WG 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E VE N ++  I  LRK    KLG D + + R +G+ +
Sbjct: 185 EEVESNAIDYLIHALRK----KLGADSIRNVRGVGWCV 218


>gi|302522283|ref|ZP_07274625.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318060992|ref|ZP_07979713.1| two-component system regulator [Streptomyces sp. SA3_actG]
 gi|318077282|ref|ZP_07984614.1| two-component system regulator [Streptomyces sp. SA3_actF]
 gi|333024045|ref|ZP_08452109.1| putative two-component system regulator [Streptomyces sp. Tu6071]
 gi|302431178|gb|EFL02994.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|332743897|gb|EGJ74338.1| putative two-component system regulator [Streptomyces sp. Tu6071]
          Length = 228

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++    +++ +   + G DD V KP   RE+LAR+ A+ RR   S +  
Sbjct: 71  IRTRSAVPVIMVTARADVRSRIHGLNLGADDYVVKPYDTRELLARIHAVARRTHSSASEP 130

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            T   GP+R+  + R+  V G    L R+E  +L  L    G    + QI S ++    E
Sbjct: 131 GTTALGPVRLTPETREVSVHGVPVQLTRKEFDLLALLALRPGVVYRREQIISEVWRTSWE 190

Query: 184 AVEENVVESHISKLRKKL 201
                 +E HI+ LR K+
Sbjct: 191 GTGRT-LEVHIASLRAKI 207


>gi|332999989|gb|EGK19572.1| transcriptional regulatory protein qseB [Shigella flexneri K-218]
          Length = 219

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ A++ A+ RR 
Sbjct: 63  L---REWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAAKLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|331663464|ref|ZP_08364374.1| transcriptional activator protein CopR [Escherichia coli TA143]
 gi|331059263|gb|EGI31240.1| transcriptional activator protein CopR [Escherichia coli TA143]
          Length = 269

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 58  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 117

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 118 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 177

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 178 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 233


>gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 248

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 9/166 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R HS  VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR 
Sbjct: 76  LEVMRRVRGHSPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S  +     E G +R+  D  +     +   L   E  +L YLM N  + ++K QI  
Sbjct: 136 GASEEKPDSLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILD 195

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            ++  +D   + N+VE +IS LR+K+    G +P + + R +GY +
Sbjct: 196 RVWN-YDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVL 238


>gi|332160068|ref|YP_004296645.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607372|emb|CBY28870.1| transcriptional regulatory protein basR/pmrA [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664298|gb|ADZ40942.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862041|emb|CBX72207.1| transcriptional regulatory protein pmrA [Yersinia enterocolitica
           W22703]
          Length = 219

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 80/155 (51%), Gaps = 6/155 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR +  S+N  
Sbjct: 68  RQHITLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQGQSDNLI 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +   + +    +   +QG+   +  +E  IL  L+   G+ V +  +   +Y   D+ + 
Sbjct: 128 QQDDLSLNLSTQQVCLQGQALEVTPKEFAILSRLIMRAGQTVNRELLQQDLYTWNDD-LG 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            N +E HI  LR+    KLG D + + R +GY ++
Sbjct: 187 SNTLEVHIHNLRR----KLGKDRIRTIRGIGYRLE 217


>gi|304397451|ref|ZP_07379329.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304355069|gb|EFM19438.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 235

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L L R IR HS++P+I ++        L   + G DD + KP   RE++ARV  I 
Sbjct: 63  GTDGLTLCREIRRHSELPIIMVTARTEEIDRLLGLELGADDYICKPFSPREVVARVKTIL 122

Query: 117 RRLKVSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR++ S    ++  +      R F+  R+  +      L   E R+L+ L    GK  ++
Sbjct: 123 RRVRRSAEEPQSASLLRVDESRFFASWREKPLD-----LTPAEFRLLKTLSLEPGKVFSR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            Q+ + +Y  +   V +  ++SHI  LR+KL N
Sbjct: 178 EQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLEN 209


>gi|121594772|ref|YP_986668.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120606852|gb|ABM42592.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 225

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 15/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---E 58
            ++++D ALV  G  A     G+ L GF S       Q+ A       +A ++  G    
Sbjct: 3   ILIVEDNALVASGIQA-----GLELHGFTSDTAGSVAQAQAHMASRQFDACVLDLGLPDG 57

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIY 116
             + L R  RA    +P++ ++   +++  +  F +G DD + KP   +E +L   A + 
Sbjct: 58  DGISLLRQWRAKGLALPVLILTARSTIEDKVAGFQTGTDDYLTKPFDLQELVLRLRALLR 117

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    +++    G  +V     +    G    + RRE  +L+ L+   G+ ++  Q+  +
Sbjct: 118 RAGGRTSDLLALGDCQVNMATGEVTRNGVAIDISRREWALLQALLQAHGRVLSAAQLHDS 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YGL D+ V+ N V  H+  LRK    KLG D +D+ R LG+ +
Sbjct: 178 LYGL-DQDVDSNTVNVHVHHLRK----KLGADVIDTVRGLGFRL 216


>gi|257057097|ref|YP_003134929.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256586969|gb|ACU98102.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 221

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 104/216 (48%), Gaps = 20/216 (9%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE---LPRIIRAH-S 71
           IA F + G++  GF     E+   +       + +  ++  G   ++   + R +RA   
Sbjct: 13  IAAFVNKGLTANGFTVTVVEDGQAAYEYALTGSFDLMVLDIGLPGMDGFTVLRKLRAERC 72

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P+I ++   S+Q T+   + G DD + KP    E+LARV     RL++ ++R++   +
Sbjct: 73  PIPVIILTARDSVQDTVAGLEGGADDYMPKPFRFEELLARV-----RLRLVSDRSQEPTV 127

Query: 132 RVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
             +         R   V GE   L  RE  + E  + + G+ +++ Q+ S ++G +D   
Sbjct: 128 LTYGGLQLDLRTRRAHVGGETVDLSAREFALAETFLRHPGQVLSREQLLSQVWG-YDFDP 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             NVV+ ++    + LR KLG D + + R +GY ++
Sbjct: 187 GSNVVDVYV----RYLRRKLGADRITTVRGMGYRLE 218


>gi|222100288|ref|YP_002534856.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Thermotoga neapolitana DSM 4359]
 gi|221572678|gb|ACM23490.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Thermotoga neapolitana DSM 4359]
          Length = 226

 Score = 62.4 bits (150), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  + E+P +  +H ++ +I +S        +   + G DD V KP + RE++ARV A+ 
Sbjct: 59  GVAMEEIPEMKVSHPEMAIIIVSARDRDMDRIFGIELGADDYVTKPFNPREVIARVKAVL 118

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR+         G + +F +       G    +  +E  +L+ L +   K  ++ +I + 
Sbjct: 119 RRMGKDQKVLRFGKLEIFPEDYVVRYDGRNVEMTAKEFELLKLLASAPNKIFSREEILNR 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I+G  D+ V + VV+ HIS     +R+K+G + + + R LGY
Sbjct: 179 IWG--DDYVSDRVVDVHIS----AIRSKIGKNWIKTVRGLGY 214


>gi|295093603|emb|CBK82694.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 230

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           +P+I ++   +L+     F  G DD + KP    E+LARV A+YRR  ++       G +
Sbjct: 74  IPVIMLTALGTLENKTAAFSRGADDYIVKPFEFDELLARVNALYRRSHQIHTFDYSYGDV 133

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
               D R  +   +   L  RE ++ E L+ + GK V++ +I  +I+GL       N++ 
Sbjct: 134 TYLIDSRTLQCGDQSVRLTNRESQLFELLLRSAGKIVSQDEIIESIWGLTSNVGNGNIL- 192

Query: 192 SHISKLRKKLRN 203
           ++I  LR +L+ 
Sbjct: 193 NYIYFLRNRLKT 204


>gi|262275301|ref|ZP_06053111.1| probable two-component response regulator protein [Grimontia
           hollisae CIP 101886]
 gi|262220546|gb|EEY71861.1| probable two-component response regulator protein [Grimontia
           hollisae CIP 101886]
          Length = 231

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 95/184 (51%), Gaps = 12/184 (6%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           DV+ ++  L   G   L L + +RA +QV  P++ ++    +   ++  ++G DD + KP
Sbjct: 46  DVAIVDRML--PGLDGLSLVKALRA-AQVGTPILFLTALGGVDDRVEGLEAGGDDYLTKP 102

Query: 103 IHHREILARVAAIYRR--LKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
               E+LARV A+ RR  LK +    E   G + +         +G+   L  +E RILE
Sbjct: 103 FAFSELLARVTALSRRAVLKTTEAMPEISYGDVVLNLFEHSATRRGQPLDLQPKEFRILE 162

Query: 159 YLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
             + + G+ + +T +   ++ + FD   + +VVE+HIS+LR KL    G   + + R +G
Sbjct: 163 LFLRHPGRVITRTMLLEHVWDIHFDP--QTSVVETHISRLRNKLEKPFGDTLIQTVRGVG 220

Query: 218 YSID 221
           Y ++
Sbjct: 221 YKLE 224


>gi|326441956|ref|ZP_08216690.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 235

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           L R+ R   +VP++ ++   +++  +    +G DD V KP    E++AR+  + RR    
Sbjct: 71  LARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAA 130

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  R E+    G + +  D R+    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 131 SAARGESLLAVGDLTLDEDSREVSRGGQAIHLTATEFELLRYLMRNPRRVLSKAQILDRV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +  +D   + NVVE ++S LRKK+    G  P + ++R  GY I
Sbjct: 191 WS-YDFGGQANVVELYVSYLRKKI--DAGRAPMIHTRRGAGYLI 231


>gi|167761675|ref|ZP_02433802.1| hypothetical protein BACSTE_00009 [Bacteroides stercoris ATCC
           43183]
 gi|167763397|ref|ZP_02435524.1| hypothetical protein BACSTE_01771 [Bacteroides stercoris ATCC
           43183]
 gi|167698691|gb|EDS15270.1| hypothetical protein BACSTE_01771 [Bacteroides stercoris ATCC
           43183]
 gi|167700456|gb|EDS17035.1| hypothetical protein BACSTE_00009 [Bacteroides stercoris ATCC
           43183]
          Length = 229

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 95/195 (48%), Gaps = 24/195 (12%)

Query: 21  DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVP 74
           ++G  ++  NS E       + + D+S  +  L+        G K+  + +  +  +++P
Sbjct: 25  NEGYEVDTANSAE------DALKMDISTYDLLLLDVMMGEISGFKMASMLKKEKKTAKIP 78

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134
           +I I+   +   T+  F+ G DD ++KP   RE+ ARV A+ RR +      E  P ++ 
Sbjct: 79  IIFITAKDTENDTVTGFNIGADDYISKPFSLREVAARVKAVLRRTR--QTETERAPEQIA 136

Query: 135 SDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VE 186
                     +   + GE  PL ++E  IL  L+ N+G+  ++  I S I+   DE  V 
Sbjct: 137 YKSLVLDIIKKKVSIDGEEAPLTKKEFEILLLLLQNKGRVFSREDILSRIWS--DEVYVL 194

Query: 187 ENVVESHISKLRKKL 201
           +  ++ +I++LRKK+
Sbjct: 195 DRTIDVNITRLRKKI 209


>gi|322804592|emb|CBZ02144.1| two-component response regulator YvcP [Clostridium botulinum H04402
           065]
          Length = 230

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S++P+I IS   S    +   ++G DD + KP +   I+A++ +  RR      
Sbjct: 66  RRIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   ++ + D  + E + E   + ++E  +LEYLM    K V +  +   I+
Sbjct: 126 PKVDEKIVELQGLKFYKDRSEIEFKDERVIITKKEGILLEYLMKKYPKVVNRDFLLEKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
               E VEEN +  ++S++RK+L ++LG  D +++ R +GY ++
Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HELGIEDGIETVRGVGYRLN 227


>gi|311894023|dbj|BAJ26431.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 10/213 (4%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSARE-----DVSAIEAFLIG-KGEKVLELPRIIRA 69
           +AL    G+  EGF      + L   AR      DV  ++  L G  G +V    R+  A
Sbjct: 12  LALAIKHGLEAEGFTVDTVHDGLSGLARATDHSYDVVILDIMLPGLNGYRVC--ARLRAA 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAET 128
            S   ++ ++         +  D+G DD ++KP     ++AR+ A+ RR+   +  RA  
Sbjct: 70  GSDAGILMLTAKDGEWDEAEALDTGADDYLSKPFSFVVLVARLKALARRIGSRAPRRAVL 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + V S  R     G    L  RE  +L++L    G+ V+K +I   ++    ++ + N
Sbjct: 130 GDLVVDSAARTCSRAGRPIALTPREFAVLDHLARRAGEAVSKREILEQVWDAAADS-DPN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE HIS LR+K+    G   + + R  GY ++
Sbjct: 189 TVEVHISALRRKIDTPFGRSALQTVRGAGYRLE 221


>gi|312112485|ref|YP_003990801.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217586|gb|ADP76190.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 232

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL  +IR     P+I +S     +  +     G DD ++KP   +E+ AR+    RR +
Sbjct: 62  MELCSMIRDRVDCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLRREE 121

Query: 121 V--SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              SN R       +  D    EV  +G    L ++E  I++ LM N+    +K +IF +
Sbjct: 122 RIRSNERQLLSSKNITIDLLANEVFCKGVKLHLTKKEYEIMKLLMLNKNMVFSKERIFES 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDWN 223
           ++GL  E+  E V ES I  +RKK+R+    DP  S  K   G    W+
Sbjct: 182 VWGLDSESQLETVTES-IKNIRKKIRS---LDPEHSYIKTLYGLGYKWD 226


>gi|260914398|ref|ZP_05920867.1| two component response regulator [Pasteurella dagmatis ATCC 43325]
 gi|260631499|gb|EEX49681.1| two component response regulator [Pasteurella dagmatis ATCC 43325]
          Length = 223

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 14/195 (7%)

Query: 9   ALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
            L K G+ +  F D    LE  NS  ++  +       +  +E     + EK        
Sbjct: 19  GLTKSGFTVDWFQDGRTGLEAVNSAPYDAVVLDLTLPKMDGLEILQTWRKEK-------- 70

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRA 126
                VP++ ++   +L   +     G DD + KP    E++AR+ A I RR   SN   
Sbjct: 71  ---CDVPVLILTARDTLDERVTGLQRGADDYLCKPFALAEVVARLQALIRRRYGQSNPII 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           E   IR   + R   +Q +   L  RE ++LE  M N+ + + +  I   +Y  +D+ V 
Sbjct: 128 EHSQIRFDPNQRKVFLQNQEVALTTREYKLLELFMLNKDRVLPRAVIEEKLYT-WDDEVS 186

Query: 187 ENVVESHISKLRKKL 201
            N +E HI  LR+KL
Sbjct: 187 SNALEVHIYNLRQKL 201


>gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 63  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 122

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 123 KQEQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204


>gi|15893741|ref|NP_347090.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023306|gb|AAK78430.1|AE007559_8 Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507864|gb|ADZ19500.1| Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 227

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 4/164 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R +S +P+I ++        +  FD G DD + KP   +E+++R+ A+ RR   
Sbjct: 62  DLCRELRKNSDIPIIFLTACDEEVNVVMGFDLGADDYITKPFKIKELISRIKAVLRRCSS 121

Query: 122 SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +E     V  D R  +     +   L   E ++L   + N G+ + +  I   ++ 
Sbjct: 122 REEVSELKSRDVLIDKRTLKAYKNDKEIVLTHMELKLLILFIENSGQTLKRNLILQRLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + +E V++N +  +I +LR+KL+       + + R +GY   WN
Sbjct: 182 ISEEFVDDNTLSVYIKRLREKLKEDSKNPYIVTVRGIGYR--WN 223


>gi|330997603|ref|ZP_08321449.1| putative transcriptional activator protein IrlR [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570314|gb|EGG52049.1| putative transcriptional activator protein IrlR [Paraprevotella
           xylaniphila YIT 11841]
          Length = 227

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 2/142 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R   Q  +I IS   S++  ++  D G DD + KP H  E+ ARV ++ RR K  
Sbjct: 63  LAHLKRTRKQESVIIISAKDSIEDKVEGLDLGADDYLAKPFHLAELNARVKSLLRRKKAG 122

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-L 180
            + +   G + +  D R   V G    L R+E  +L Y ++N  + + +  +  +++G  
Sbjct: 123 GDTSIVLGNLTLVPDTRKATVDGNELNLNRKEFDLLYYFISNPNRLINRMALAESVWGDH 182

Query: 181 FDEAVEENVVESHISKLRKKLR 202
            D+A   + + S +  LRKK++
Sbjct: 183 IDQADSLDFIYSQVKNLRKKMK 204


>gi|297565507|ref|YP_003684479.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849956|gb|ADH62971.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 222

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ R IRA    P+I ++        L   + G DD V KP   RE++ARV A+ RR  
Sbjct: 59  LEVLRRIRADGNTPVILVTARSEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRAN 118

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+ +      GP+ + ++     V      L   E R+LE L    G+   + ++  A 
Sbjct: 119 PLESAATVLRAGPLEIDTEWVMARVGASRLELTPTEFRLLETLARTPGRAFTRQELLEA- 177

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             L D    E V++ H+  LRKKL        +++ R +GY + W
Sbjct: 178 -ALPDSDALERVIDVHLKNLRKKLEAAGATGLLETVRGVGYRL-W 220


>gi|295677563|ref|YP_003606087.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437406|gb|ADG16576.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 220

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LEVLRALRARGNALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQ 119

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +Y
Sbjct: 120 SGRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G + E +  N VE +I  LRK    KLG D + + R LGY I
Sbjct: 180 G-WGEEIGSNTVEVYIHALRK----KLGADLIRNVRGLGYMI 216


>gi|269104518|ref|ZP_06157214.1| response regulator [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161158|gb|EEZ39655.1| response regulator [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 219

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI 131
            P++ +S    L   ++  ++G DD + KP    E++AR+ A  RR   + +   + GP+
Sbjct: 73  CPIVILSARSELTQRVEGLNAGADDYLTKPFQMVELVARLRAQLRRSTGNTSPVIQAGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190
            + +        G+   L   E ++L YLM N+ K +++T++   IY   FD   + N +
Sbjct: 133 ELDTRSSKVTFHGQPVELTALEFKVLSYLMHNQDKVISRTELVEHIYKQDFDR--DSNTI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  I ++R+    K+G D + + R LGY I+
Sbjct: 191 EVFIGRIRR----KVGTDVIKTVRGLGYRIN 217


>gi|322420870|ref|YP_004200093.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320127257|gb|ADW14817.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   LE+ + IR  SQ+P+I I+        L   + G DD V KP   RE++ARV  + 
Sbjct: 58  GRDGLEICKEIRTFSQLPIIMITARVEEIDRLLGLELGADDYVCKPFSPREVVARVKTVL 117

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR    +     G + +  D    + QG    L   E ++L +L  N G+  +++Q+   
Sbjct: 118 RR-SGEHPAPAAGGLTLDPDRYSAQWQGRDLDLTVVEFKLLHFLYQNPGRIYSRSQLMDR 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           IY      V +  ++SHI KLRKK+
Sbjct: 177 IYS-DQRIVSDRTIDSHIKKLRKKI 200


>gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 228

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           E L+   R+    +   L+  G    ++ R +R  S VP+I ++   S    +   + G 
Sbjct: 37  EGLELFERQGADLVLLDLMLPGLSGTDVCRRLRERSNVPIIMLTARDSEVDKVVGLELGA 96

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLP 150
           DD V KP   RE++AR+ A+ RR     +       E GP+R+  D     V+G    LP
Sbjct: 97  DDYVTKPFSSRELVARIRAVLRRRDGGGDEQRTTVLEAGPVRIDIDRHVVLVRGAPVHLP 156

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
            RE  +LE L+ + G+ + + Q+   I+G  D   +   ++ H+ +LR ++ +    DP 
Sbjct: 157 LREFELLEMLVRHAGRVLTRQQLIDRIWG-GDYVGDTKTLDVHVKRLRSRIED----DPS 211

Query: 211 DSKRFL 216
           + +  +
Sbjct: 212 EPRHLV 217


>gi|260598679|ref|YP_003211250.1| transcriptional regulatory protein TctD [Cronobacter turicensis
           z3032]
 gi|260217856|emb|CBA32382.1| Transcriptional regulatory protein tctD [Cronobacter turicensis
           z3032]
          Length = 226

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R    VP++ ++ + ++   +   + G DD + KP    E+ AR+ A+ RR +  
Sbjct: 63  LSRLRRRGQAVPVLLLTAHGAVADRVKGLNEGADDYLPKPFELSELEARLRALVRRSEGQ 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              A+      F D    E+QG    L  RE  +L  LM  R + V + Q+F  ++ L D
Sbjct: 123 VQEAQRLGELTFHDAGYFELQGRPLALTPREHALLTVLMYRRRRPVTRQQLFEQVFSLSD 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
           +   E+ +E +I +LRKKL   L  +  + + R LGY ++ +
Sbjct: 183 DVSPES-IEIYIHRLRKKL---LASNVQITTLRGLGYVLECS 220


>gi|251795531|ref|YP_003010262.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543157|gb|ACT00176.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 239

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L R+ +   + P+I ++   + +  +     G DD + KP    E+LARV+A+ RR    
Sbjct: 65  LTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQD 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               ++ S      G + ++ +  +  + GE  PL  +E  +L YL+   G  + +  + 
Sbjct: 125 DSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDLM 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + ++G FD    +  V+ H+S LRKKL  +LG    ++S R +GY +
Sbjct: 185 NVVWG-FDYIGGQRTVDVHVSSLRKKL--ELGQSVQIESIRGVGYKL 228


>gi|116253935|ref|YP_769773.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258583|emb|CAK09687.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 240

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 21/230 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  + L    G       S    + +    + D+  ++A L   GE   
Sbjct: 9   ILIVEDDPPIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAML--PGEDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +RA   VP++ ++   +LQ  +D     + G DD V KP + RE+LAR+ +I RR
Sbjct: 67  SICRRLRAACSVPILMLT---ALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRR 123

Query: 119 LKVSNNRAET-GPIRVFSDGR-DP------EVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              ++++ E  GP+ +FS  R DP      +  G    +   E  IL     N  K + +
Sbjct: 124 ASYAHHQEEALGPM-MFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
            Q+ S  +      VE + +++HIS++R+K+   L  DP  + + R  GY
Sbjct: 183 EQLLSMTHAGSAGPVERS-IDAHISRVRQKIEPNLK-DPTFIKTVRLGGY 230


>gi|32469244|dbj|BAC79018.1| repressor-response regulator [Streptomyces sp. AM-7161]
          Length = 226

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 9/153 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ R +RA    P+I  +   +    +    +G DD + +P   RE++AR+ A+ RR+ 
Sbjct: 58  IEVCRRMRAAGDTPIISFAGESAELDRILGLQAGSDDCLERPYSFRELMARIDAVMRRVG 117

Query: 120 -KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++   R  T   G + + S+ R+  + G   PL R+E  +L YL +  G  V++ ++  
Sbjct: 118 ARIGGQRRPTLSRGGLSLDSESREVVLDGRPIPLTRKEFDLLHYLASRPGVVVSRQRLMI 177

Query: 176 AIYG----LFDEAVEENVVESHISKLRKKLRNK 204
            ++G    +   A     +++H+S +R KLR  
Sbjct: 178 DVWGHPADVGLSAQASRTIDTHVSSMRSKLRES 210


>gi|255326451|ref|ZP_05367533.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC
           25296]
 gi|255296491|gb|EET75826.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC
           25296]
          Length = 247

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 7/162 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L RI + + +VP + ++   S+   ++   +G DD V KP    E++ R+  + +R  V+
Sbjct: 85  LSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSGVA 144

Query: 123 N-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + AE   G + +  D R+    GE   L   +  +L YLM N  + V+K+QI   ++ 
Sbjct: 145 AIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDNVWN 204

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +D   + N+VE +IS LRKK+   +G +P + + R  GY +
Sbjct: 205 -YDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAGYVL 243


>gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 227

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 15/166 (9%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  + VP+I +S        +   + G DD V KP   RE++ARV A+ RR   SN 
Sbjct: 67  REIRRQTAVPIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRR---SNA 123

Query: 125 RAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFS 175
            A TG         + + ++ R  EV+G+   L  +E  +L +L A+R +RV ++ Q+ +
Sbjct: 124 PAGTGAGPALRYPGLTIDTEARRVEVEGQPIALTPKEFELLAFL-ASRPRRVFSREQLLA 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  ++   +   V++HI +LR+KLR   G + + +   LGY  +
Sbjct: 183 GVWD-YEYPGDTRTVDTHIKRLREKLRGT-GRNYLKTVWGLGYKFE 226


>gi|254253753|ref|ZP_04947070.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124898398|gb|EAY70241.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 224

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 16/195 (8%)

Query: 36  EWLQSSAREDVSAIEAF--------LIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQT 86
           EW++  A    S I+AF        L   G   L++ R +RA H +VP++ ++    + T
Sbjct: 28  EWVRDGAAGHAS-IDAFEYTAVLLDLGLPGMSGLDVLRAVRASHKEVPILILTARDDVDT 86

Query: 87  TLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGE 145
            +   D G DD + KP   RE+LARV A+ RR    + +R     + +  D R    +G 
Sbjct: 87  RVQGLDLGADDYIAKPFQVRELLARVRAVMRRKAGYAASRLGDDSLCLDLDKRTLNCRGV 146

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
             PL  RE  ++   +   G  +++ Q+   +YG +   +E N ++  I  +RK    K 
Sbjct: 147 ELPLTSREFALMLAFLERPGTILSREQLEEKLYG-WGREIESNAIDVLIYSIRK----KF 201

Query: 206 GFDPVDSKRFLGYSI 220
           G   + + R +G+++
Sbjct: 202 GQSVIRNVRGIGWTV 216


>gi|330448429|ref|ZP_08312077.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492620|dbj|GAA06574.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 219

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 10/153 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
             P++ +S    L   +D  ++G DD + KP    E++ARV A  RR    N        
Sbjct: 72  NCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRR-STGNASPVIQAG 130

Query: 132 RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            +  D R  +V  QG++  L   E ++L YLM N  K +++T++   IY   FD   + N
Sbjct: 131 DLSLDTRTSKVTWQGQLVDLTALEFKVLSYLMHNTDKVISRTELVEHIYKQDFDR--DSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E  I ++R+    K+G D + + R LGY I+
Sbjct: 189 TIEVFIGRIRR----KIGNDVIKTVRGLGYRIN 217


>gi|308234693|ref|ZP_07665430.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 246

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +    VP++ ++     Q  +     G DD V KP    E++AR+ AI RR   + +
Sbjct: 71  RIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQD 127

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             E  P+       +  D  D    G    L   E ++L YLM N G+ ++K+QI + ++
Sbjct: 128 PDEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKK-----LRNKLG-----FDPVDSKRFLGYSI 220
             +D   +  +VES+IS LRKK     ++N+ G        +++KR +GY I
Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMI 238


>gi|295394476|ref|ZP_06804699.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972655|gb|EFG48507.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 227

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 13/143 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  SQVP+I ++     Q+ ++  D G DD V KP    E+LAR+ A  RR  V    A
Sbjct: 65  IRGWSQVPIIVVTARHETQSKIEALDRGADDYVTKPFALGELLARLRANLRR--VPQETA 122

Query: 127 ETGPIRVFSDGRDP--------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           E  P+ V SDGR           V GE   L   E +I+ YL  +  + V + ++ + ++
Sbjct: 123 E--PVVVTSDGRLSIDLARNIVAVSGEQVSLTPHEWKIVGYLARHPNRLVRREELLTHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G   E  E N    ++S++R+KL
Sbjct: 181 GKGYEK-ESNYARVYMSQIRQKL 202


>gi|255523352|ref|ZP_05390322.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188286|ref|ZP_06856678.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255513006|gb|EET89276.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047412|gb|EFG86854.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 225

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 105/222 (47%), Gaps = 13/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS----SAREDVSAIEAFLIGKG 57
            +++DD  L++         D +  EG+ +LE E+  ++    S+ +D+  +   ++   
Sbjct: 6   ILVVDDEPLIRK-----LVTDFLKREGYITLEAEDGRKALDVFSSEKDIDLVILDVMLPE 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
                + R IR  S  P+I ++        L  FD G D+ + KP     ++ARV A+ R
Sbjct: 61  YDGWTVCREIRKKSSTPIIMLTARGEEFDELFGFDIGADEYIAKPFSPNILVARVNAVLR 120

Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R + V +   E   + +  +  +  +      L  +E  +L YL  N GK V++ QI   
Sbjct: 121 RAVPVDSKTKEFNGLIIDENAHEVNIDDCTIDLSPKEYDLLMYLTENYGKAVSREQILDK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G +D   +   V++HI++LR KL +K  +  V + R  GY
Sbjct: 181 VWG-YDYYGDLRTVDTHINRLRIKLDSKSNY--VQTVRGYGY 219


>gi|220935053|ref|YP_002513952.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996363|gb|ACL72965.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 244

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 29/210 (13%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           D +L   GY  L    G   EG         L +S   D+  ++  L  K  K  E+ + 
Sbjct: 31  DISLRSQGYATLLA--GTGREGLT-------LLASKGADLVVLDLGLPDKDGK--EVLKE 79

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S+VP+I ++     +  +   D+G +D V KP    E++AR+ A  R L    + A
Sbjct: 80  LRRWSRVPVIVLTVRSGEEEKVALLDAGANDYVTKPFGVEELMARIRAFLRTL---GSGA 136

Query: 127 ETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           E  P  V+ DG        R+  V G+V  L R+E  +L  L    G+ + +TQI   ++
Sbjct: 137 EEDP--VYDDGVVRIDLAQREVTVHGQVVTLSRKEFSLLSLLARQPGRLITQTQILREVW 194

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           G      EE+    ++  L  KLRNKLG D
Sbjct: 195 G---PTHEEDA--HYLRILVGKLRNKLGDD 219


>gi|154503273|ref|ZP_02040333.1| hypothetical protein RUMGNA_01097 [Ruminococcus gnavus ATCC 29149]
 gi|153796267|gb|EDN78687.1| hypothetical protein RUMGNA_01097 [Ruminococcus gnavus ATCC 29149]
          Length = 226

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 107/225 (47%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I      G+  +GF   E   ++++ A +    I   ++  GE  
Sbjct: 1   MIYCVEDDDNIRELVIYTLETTGLKAKGFA--EGTAFMEALAFDTPELILLDIMLPGEDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LEL + ++  ++   +P+I ++   +    +   DSG DD V KP    E+++R+ A+ R
Sbjct: 59  LELLKKLKNSAKTKDIPVIMVTAKGAEYDKVIGLDSGADDYVTKPFGMMELVSRIKAVLR 118

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R      +       V  D +  EV+  GE+  L  +E  +LE LM N+   + + Q+  
Sbjct: 119 RSGRVQEQDMLSVNGVSVDVKKHEVKVAGEIVTLTLKEFELLERLMRNQNIVLTRDQLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ H+  LR+KL  K   D + + R +GY I
Sbjct: 179 DIWG-YDFDGETRTVDVHVRTLRQKLGEK--GDIIKTVRGVGYRI 220


>gi|21230181|ref|NP_636098.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21111717|gb|AAM40022.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 238

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 19/172 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        +   D+G +D V KP   +E++AR+ A+ R+   
Sbjct: 71  EVLREIRQWSSVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 130

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N   E+    VF DG        R+  + GE  PL R+E  +L  L  + G+ V + Q+
Sbjct: 131 GNTVEES----VFDDGRLHIHLGLREVTLDGEAVPLSRKEYALLALLFKHAGRVVTQPQL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYS 219
              ++G   E  + + +   + KLR+KL +          +P    RF+G +
Sbjct: 187 LREVWGPTHEE-DTHYLRILVGKLRQKLHDDAAAPHYIVTEPGVGLRFIGVT 237


>gi|311105062|ref|YP_003977915.1| transcriptional regulator TctD 3 [Achromobacter xylosoxidans A8]
 gi|310759751|gb|ADP15200.1| transcriptional regulatory protein TctD 3 [Achromobacter
           xylosoxidans A8]
          Length = 229

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA +S +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G +     GR   V  +   L  RE  +LE L+   G+ V+KTQ+   + 
Sbjct: 120 AGGGATMIKHGRLLFDQTGRVAMVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKKL    G   V + R LGY ++
Sbjct: 180 E-WGEEVSTNAIEVYVHRLRKKLEPS-GVKIV-TVRGLGYCLE 219


>gi|297531093|ref|YP_003672368.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297254345|gb|ADI27791.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 225

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-- 129
           + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR      +      
Sbjct: 71  ETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQSPELKARLRALLRRSGALTTKQTIRYR 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +F   +   V G+   L  ++  +LEYL+ N+G  + K QIF  I+G FD     ++
Sbjct: 131 GIELFGKEKGVVVDGQPLKLTSKQYELLEYLVHNQGVILTKEQIFDRIWG-FDSDTTISI 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           VE  + +LRKKL        + + R +GY +
Sbjct: 190 VEVFVHQLRKKLEPFGYHADIQTVRGIGYML 220


>gi|257064074|ref|YP_003143746.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791727|gb|ACV22397.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 225

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 16/141 (11%)

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDP 140
           D FD+G DD + KP     +LAR+ A+ RR        LK S+   +T   RV   GR+ 
Sbjct: 89  DAFDTGADDFLRKPFSLVVLLARLRALVRRGGVAKGSVLKASDLMLDTRTKRVTRAGREI 148

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           E       L  RE  +LE L+ N G  + K  +   ++G +    +ENVVE +IS LR+K
Sbjct: 149 E-------LTPREFALLELLLMNAGNALPKQLLLERVWG-YAILADENVVEVYISYLRRK 200

Query: 201 LRNKLGFDPVDSKRFLGYSID 221
           +        + + R +GY ID
Sbjct: 201 VDAPFDKKLIRTVRGVGYCID 221


>gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 224

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQVP+I ++        +     G DD ++KP   +E+LAR+ A+ RR   
Sbjct: 62  EVCRQIRKMSQVPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +N+ +   I       DP       Q +   +  +E  +L   + +  +  ++ Q+ ++
Sbjct: 119 -SNQNQNETIEKNGLKWDPVSFQVFYQNQPVSVTPKEFAMLGLFLQHPNQVFSREQLLTS 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           I+G ++   E+  ++SHI  +R KLRN  GF PVDS
Sbjct: 178 IWG-YEVETEDRTIDSHIRNVRDKLRNA-GF-PVDS 210


>gi|220927161|ref|YP_002502463.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
 gi|219951768|gb|ACL62160.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 234

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R IRA  +   +P+I ++        +    +G DD + KP    E+LARV A+ R
Sbjct: 62  IELCRRIRARRETERLPIIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLR 121

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K ++  +    G I +         +G    L   E ++LE+LM + G+  ++ Q+  
Sbjct: 122 RAKPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  ++E  V+ HI +LRK +      DP+ + R  GYS D
Sbjct: 182 GVWG-HDVYIDERTVDVHIGRLRKAINRPRRPDPIRTVRGSGYSFD 226


>gi|330818169|ref|YP_004361874.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370562|gb|AEA61918.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 233

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 13/157 (8%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R H+ +P++ I+   ++   +   D+G DD + KP    E+ AR+ A+ RR    + R+E
Sbjct: 82  RGHA-LPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRALIRR---QSGRSE 137

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG + E
Sbjct: 138 SVIRHGALTLDPASHQVTLDGAAVALSAREFALLEALLARPGAVLSKSQLEEKMYG-WGE 196

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 197 EIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 229


>gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 228

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 5/143 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
           R IRA S  P+I ++        +   D G DD V KP    E++ARV A+ RR  ++N 
Sbjct: 66  REIRAMSNAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVLRRTSLANQ 125

Query: 124 --NRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             NR    P + V  D    EV G    L  +E  +L +L ++ GK  ++ Q+ S ++  
Sbjct: 126 DGNRVLFYPGLTVNYDSHLVEVDGRRVSLTPKEFELLWFLASHPGKVYSREQLLSYVWD- 184

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
           +D   +   V++HI +LR+KL +
Sbjct: 185 YDYLGDPRTVDTHIKRLREKLES 207


>gi|117624105|ref|YP_853018.1| transcriptional regulatory protein YedW [Escherichia coli APEC O1]
 gi|301029610|ref|ZP_07192682.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|91072760|gb|ABE07641.1| putative 2-component transcriptional regulator yedW [Escherichia
           coli UTI89]
 gi|115513229|gb|ABJ01304.1| putative 2-component transcriptional regulator [Escherichia coli
           APEC O1]
 gi|294492861|gb|ADE91617.1| heavy metal response regulator [Escherichia coli IHE3034]
 gi|299877512|gb|EFI85723.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|307626558|gb|ADN70862.1| transcriptional regulatory protein YedW [Escherichia coli UM146]
 gi|323952458|gb|EGB48331.1| heavy metal response regulator [Escherichia coli H252]
          Length = 260

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYS 254


>gi|332652328|ref|ZP_08418073.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
 gi|332517474|gb|EGJ47077.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
          Length = 225

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 2/158 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSN 123
           R+  AH   P++ ++    +   +   D G DD + KP    E++ARV A+ RR  +V  
Sbjct: 65  RLRSAHISTPILMLTARDDISDKIGGLDCGADDYMTKPFDSGELMARVRALTRRQGEVLG 124

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  + G + +    R   V      L  +E  ++  LM N    V+K  + + I+GL  E
Sbjct: 125 DVLKVGDLSLECSSRLLRVGERSVRLGFKEFEVMRLLMVNSRAVVSKETLIAKIWGLDSE 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A E+N VE +IS LRKKL        + + R +GY ++
Sbjct: 185 A-EDNNVEVYISFLRKKLAYLGSRIAISTVRKVGYYLE 221


>gi|291458575|ref|ZP_06597965.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419108|gb|EFE92827.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 223

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +L+L R  R +  V +I ++    ++  +   D G +D + KP H  E+ AR+ ++ 
Sbjct: 59  GFTLLQLIR--RENKLVNVIMLTARTEIKDRVKGLDLGANDYLIKPFHFEELEARIRSLL 116

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR ++  +   +    +  D R   V  +G+   L  +E  ILEYL+ N+G  +++ ++ 
Sbjct: 117 RRKQLQEDTVLSAQ-GISYDMRSKTVTAEGKAIRLTAKELGILEYLLLNQGNYISQEELL 175

Query: 175 SAIY-GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ G  +E    N V  H+S LR+KL+  LG + + ++   GY ID
Sbjct: 176 EHVWDGDMNEF--SNTVRVHVSALRRKLKESLGKNIIRNEIGKGYIID 221


>gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072766|gb|ADJ62165.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 237

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S++P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRG 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 120 AGGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKK+  ++G   + + R LGY ++
Sbjct: 180 E-WGEEVSNNAIEVYVHRLRKKI--EVGGVRIATVRGLGYCLE 219


>gi|307945464|ref|ZP_07660800.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4]
 gi|307771337|gb|EFO30562.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4]
          Length = 228

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A    P++ +S    +   +    +G DD + KP    E+ ARV A+ RR K S +   T
Sbjct: 70  AGDHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELQARVEALARRPKASGDLETT 129

Query: 129 GPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
             +      R+    R  +V+    PL  RE R+LEYLM + G+ V +T +   ++   F
Sbjct: 130 YQVGDLVLDRLAHSCRRGDVE---IPLQPREFRLLEYLMQHAGQVVTRTMLLENVWEYHF 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   + NV++ HIS+LR K+        + + R  GYSI
Sbjct: 187 DP--QTNVIDVHISRLRAKIDKDFDKPLLQTIRGAGYSI 223


>gi|226349426|ref|YP_002776540.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
 gi|226245341|dbj|BAH55688.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 224

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 18/209 (8%)

Query: 23  GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGI 78
           G++ EGF    + E  + L+ +   D   +   ++  G    ++ R +RA     P++ +
Sbjct: 19  GLTAEGFVVDVAREGCDGLEQAVTGDFDVVVLDIMLPGMHGYQILRELRARQVWTPVLML 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPI 131
           S         D FD G DD + KP     ++AR+ A+ RR       +  + N A     
Sbjct: 79  SAKDGEYDQADAFDLGADDYLTKPFSFVILVARLRALLRRGAPERPAILTAGNLALDPAR 138

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           R  S G D      V  L  RE  +LE+L+ N+G  V+K +I  +++    +  ++NVVE
Sbjct: 139 RRVSRGED------VLALTPREYGVLEFLLRNKGDVVSKAEILRSVWDSNYDG-DDNVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +I  LR+K+    G   +++ R +GY +
Sbjct: 192 VYIGYLRRKIDAPFGMATIETVRGVGYRL 220


>gi|91789521|ref|YP_550473.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91698746|gb|ABE45575.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 219

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA  +  P++  +   ++   +   D+G DD V KP    E+LAR+ A+ RR 
Sbjct: 60  LEVLRSLRARRNATPVLVATARDAIGDRIAGLDAGADDYVVKPYDIDELLARIRALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S  R E       + +    R+  V G+   L  RE  +LE L+A  G  +++ Q+  
Sbjct: 119 --SAGRGEPVFEHKGVSLNPATREASVHGQPVSLSAREWAVLEALLARPGVVLSRAQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   DE V  N VE +I  +RKKL N+L    + + R LGY +
Sbjct: 177 KLFSWKDE-VSSNAVEVYIHGVRKKLGNEL----IQTVRGLGYLV 216


>gi|331653384|ref|ZP_08354389.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
 gi|331049482|gb|EGI21554.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
          Length = 260

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLITTIRGMGYS 254


>gi|170719341|ref|YP_001747029.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169757344|gb|ACA70660.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 229

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G++ LE E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   S++ A   PI V     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRAGPSDSEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|258510266|ref|YP_003183700.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|50830978|emb|CAG29816.1| putative response regulator transcription factor kdpE
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476992|gb|ACV57311.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 232

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V+ D+RA++K   IAL G     LE  +S E    + S+ R D++ I+  L     + 
Sbjct: 6   ILVVDDERAILKLMQIALKGHGYEVLEA-SSGEEALVVASTKRPDLAVIDWGL--PDMEG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  SQ+P+I ++   + +  +   D+G DD V KP    E+LAR+    R   
Sbjct: 63  IEVLRRLREWSQMPVIMLTVRDAEEDKIAALDAGADDYVVKPFGMGELLARIRVALRHAA 122

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    E   + +    R  E+ GE   L   E  +L+ L  N GK V + Q+   ++
Sbjct: 123 RVQDEPVIEAAGLAIHLAERRVELNGEAVKLTPIEYDLLKALAQNAGKVVTQRQLLRHVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
           G  D     + +  +I  LRKKL +
Sbjct: 183 GDVDPDNAAHYLRVYIGHLRKKLED 207


>gi|330684103|gb|EGG95854.1| putative response regulator protein GraR [Staphylococcus
           epidermidis VCU121]
          Length = 221

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           +R  S VP+I IS        +     G DD + KP +    +A+V A+ RR   L VSN
Sbjct: 66  MRKISNVPIIFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTVAKVQALLRRTYDLAVSN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N       ++  D      Q +V  L   E +I++ L  N GK V +T +    +   + 
Sbjct: 126 NELNVKGCKLIVDEAKLMFQDDVTQLSLTELQIVKLLFQNEGKFVNRTALIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      D +++K+ +GY +
Sbjct: 185 YIDDNTLAVNMTRLRKKLSQIGLTDFIETKKNVGYRV 221


>gi|319934827|ref|ZP_08009272.1| regulatory protein VanR [Coprobacillus sp. 29_1]
 gi|319810204|gb|EFW06566.1| regulatory protein VanR [Coprobacillus sp. 29_1]
          Length = 223

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 27/221 (12%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65
           +  L+K+GY     +   +  G  ++     L   A+ D+  ++  L G  GE+VL  P+
Sbjct: 20  EETLIKEGY-----ETSRAYSGTEAI----LLLEHAKPDLVLLDLMLPGLNGEEVL--PK 68

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           I      +P+I IS    +   ++   +G  D + KP H +E+LAR+A   R+       
Sbjct: 69  I----KNIPVIIISAKIDIDNKVNLLLNGAVDYMTKPFHKKELLARIAVQLRKPIF---- 120

Query: 126 AETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            E+ PI  F       +     +      L R E  IL+ LM N  + + K+ +   I  
Sbjct: 121 LESSPILTFEELNLHHNTHTVTIHNTEIKLTRTEYAILKLLMQNPSQIITKSLLLERISD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +  E + ++ HIS LRKKLR   G D +++   +G+ +
Sbjct: 181 DTPDCTESS-LKMHISNLRKKLREVTGKDYIEAVWGIGFKL 220


>gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 5/179 (2%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86
           E F++   EE L+   R     I   L   G   LE+ R +R  S +P+I +S   + + 
Sbjct: 31  EVFSASSGEEALEEVVRHRPDLILLDLGLPGISGLEVCRKVREQSNLPIIVLSVKDTERD 90

Query: 87  TLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRA-ETGPIRVFSDGRDPEV 142
            +   D G DD V+KP    E+LARV    R   ++KV      + GP+RV    R  +V
Sbjct: 91  KVQALDLGADDYVSKPFGLNEVLARVRVALRHSAQVKVGTEPVFQAGPLRVDFSQRLVQV 150

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +G+   L   E  +L+ L+ N GK + +  + S ++G      E + +  +I +LR+K+
Sbjct: 151 EGKEVKLTPTEYDLLKALIRNSGKIMTRQMLLSQVWGT-GYGTEAHYLHVYIGQLRRKI 208


>gi|298290576|ref|YP_003692515.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927087|gb|ADH87896.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 224

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R  RA    +P++ ++   +L   +   + G DD V KP H  E++AR+ A+ RR 
Sbjct: 60  LDLLRRQRARGLAIPVLILTARDNLADRVRGLEQGGDDYVLKPFHMDELVARLRALLRRP 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + + +  R   V     PL RRE  +LE  M   G+ + +  I  A+Y
Sbjct: 120 NQALGANIIVGNVALNTADRSVTVSHAPLPLSRRELGLLELFMRRSGRVLTRECIERALY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             FD+ +E N VE  + +LR+KL        + + R +GY ++
Sbjct: 180 S-FDDELESNAVEVLLHRLRRKLTGAGASPEIHTLRGIGYLLE 221


>gi|255324243|ref|ZP_05365365.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255298759|gb|EET78054.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 235

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 27/209 (12%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+G+  +   DG  +LE F            A  D+  +   L+  G    E+ + +R
Sbjct: 21  LRKEGFEPIIAHDGPTALEKF------------AANDIDIVLLDLMLPGMSGTEVCKQLR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   S   A+T
Sbjct: 69  TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHDSGAGADT 128

Query: 129 -------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G +++  +     V  E   +P +E  +LEYL+ N G+ + + Q+  
Sbjct: 129 EAEEEVAEQILEGGRVKMDVERHTVTVADEPVSMPLKEFDLLEYLLRNAGRVLTRGQLID 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204
            I+G  D   +   ++ H+ +LR K+  +
Sbjct: 189 RIWG-ADYVGDTKTLDVHVKRLRSKIEEQ 216


>gi|229043138|ref|ZP_04190863.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229144003|ref|ZP_04272419.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228639400|gb|EEK95814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228726197|gb|EEL77429.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 218

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|162138420|ref|YP_541172.2| transcriptional regulatory protein YedW [Escherichia coli UTI89]
 gi|218558823|ref|YP_002391736.1| transcriptional regulatory protein YedW [Escherichia coli S88]
 gi|218365592|emb|CAR03319.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli S88]
 gi|309702255|emb|CBJ01572.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|323961816|gb|EGB57416.1| heavy metal response regulator [Escherichia coli H489]
          Length = 223

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 42  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 102 FSFSELLARVRAQLRQHHALNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 161

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYS 217


>gi|15803567|ref|NP_289600.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 EDL933]
 gi|12517595|gb|AAG58159.1|AE005532_3 quorum sensing Escherichia coli regulator B [Escherichia coli
           O157:H7 str. EDL933]
          Length = 219

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALEERVXGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|325694299|gb|EGD36213.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
          Length = 224

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V          G+   L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 TVNLSTNSTLKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTVSVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+       + + R +GY
Sbjct: 192 VYVSKIRKKLKGTTFAKNLHTLRSVGY 218


>gi|295676683|ref|YP_003605207.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295436526|gb|ADG15696.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 219

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 6/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R+  A + VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR +  
Sbjct: 63  LKRMRDAGNDVPVLVLTAKGTVVDRVGGLEAGADDYLGKPFDLTELVARCRALLRRAQGR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +      + V    +  ++     PL  RE  IL  L+ N G   +++++  ++YG +
Sbjct: 123 SIDLIRYQNLTVNPAAQTVQIDEARVPLTSREWAILLQLLTNLGIPQSRSRLEESLYG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E +E N +E H+S LRK    KLG + + + R +GY ++
Sbjct: 182 QEEIESNAIEVHVSNLRK----KLGANLIKTVRNIGYVME 217


>gi|229163835|ref|ZP_04291778.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619655|gb|EEK76538.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 231

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223


>gi|169349478|ref|ZP_02866416.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552]
 gi|169293553|gb|EDS75686.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552]
          Length = 227

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 111/226 (49%), Gaps = 21/226 (9%)

Query: 1   MFVLIDDR--------ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           +FV+ DD         ALV +GY  +  D+ +     ++LE  +    S      AI   
Sbjct: 5   IFVIEDDENIREIINLALVSNGYEVVQFDNAI-----DALELMKKETPSL-----AIFDL 54

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           ++ K   +  + +I   ++++P++ +S        ++  DSG DD + KP    E+ ARV
Sbjct: 55  MLPKMSGIDAIKKIRETNNELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARV 114

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++ RR  V+++  +T  + V    R  ++ G+   L  +E ++L YLM N+ + V + +
Sbjct: 115 RSLLRR-HVTSDVIKTKHLVVDKQTRMIKMDGKKLELTNKEYQLLVYLMDNKHRVVEREE 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + + I+G +D   E   ++ HI  LR KL N  G   + + R +GY
Sbjct: 174 LLNEIWG-YDFIGESRALDVHIRALRSKL-NDDGHKYIKTIRSVGY 217


>gi|326790669|ref|YP_004308490.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541433|gb|ADZ83292.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 221

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 3/154 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S +P+I ++   S    L   + G DD V KP + + +LAR+A++ RR +      
Sbjct: 67  IRAASSIPIIVVTSRDSEMDELMSMNLGADDFVTKPYNIQILLARIASVLRRTQRHQELK 126

Query: 127 ETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 +  D    +V  + +   L + E RIL  LM ++   V++ +I + ++   DE 
Sbjct: 127 AITYKGLTLDLSQSKVSFENQEVELTKNELRILHLLMKHQTTIVSRDEIMNELWQ-SDEF 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V++N +  +I++LR+KL +    D + +KR  GY
Sbjct: 186 VDDNTLTVNINRLRRKLEDVGANDYIMTKRGQGY 219


>gi|196228357|ref|ZP_03127224.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227760|gb|EDY22263.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 226

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
           R+ + ++ VP++ ++   +L   +  F+SG DD + KP    E+L R+ A+ RR  V   
Sbjct: 65  RVRKQNTDVPIVVLTARDALSDKVANFESGADDYLTKPFAFAELLVRIKALLRRGAVPRA 124

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  +   + +          G+   L  +E  +LEYL  N G+ +++T I   ++   D+
Sbjct: 125 NVIQIADLEIDRLAHQVRRGGQSIKLTAKEYGLLEYLATNAGRVLSRTMIVEHVW---DQ 181

Query: 184 AVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + E   N+V+ ++ +LR K+        + + R +GY I+ N
Sbjct: 182 SFEGLTNIVDVYVRQLRAKIDEPFDRKLIHTVRSVGYVINEN 223


>gi|148556617|ref|YP_001264199.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501807|gb|ABQ70061.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 232

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R + Q+P   I +   +L+  +   D+G DD V KP+   E+ AR+ A+ RR  V     
Sbjct: 74  RKYQQMPPAIIQTARGALEDRVTGLDAGADDYVVKPVEVDELAARIRALLRRPGVRTQPV 133

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E G +   +  R   +      L RRE  +LE LM   G  V +  I +A+Y  F++ V
Sbjct: 134 IEVGTLCFDTASRSASIADRNVDLSRREADLLELLMRRAGTVVHRDVIENALYS-FNDPV 192

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             N VE+ +S+LR+KL        + + R +GY +
Sbjct: 193 TPNAVEAAVSRLRRKLDEAAMPGTLHTVRGVGYML 227


>gi|118586833|ref|ZP_01544268.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290889967|ref|ZP_06553053.1| hypothetical protein AWRIB429_0443 [Oenococcus oeni AWRIB429]
 gi|118432753|gb|EAV39484.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290480409|gb|EFD89047.1| hypothetical protein AWRIB429_0443 [Oenococcus oeni AWRIB429]
          Length = 228

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 24/214 (11%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           YI L   DG    G +  E     Q+S R +V  ++ +++ K + +  L RI + +SQV 
Sbjct: 28  YIVLTASDGEM--GLSVFE-----QNSNRINVVLLD-WMLPKRDGLEVLRRIRKLNSQVS 79

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRA 126
           +I ++    +   +   DSG DD + KP    E+LAR+    R          +VSN   
Sbjct: 80  IILMTAKSDIGDKVAALDSGADDYITKPFEIEELLARLRVTIRHQNKPRPKLYQVSNLVL 139

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +    RV  D       G+V  L +RE ++L YL+ N GK + +  +   ++G+ D   +
Sbjct: 140 DLDAHRVTRD-------GQVIDLTQREFQLLTYLIENAGKTLTRDDLLDNVWGV-DFNGQ 191

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N  + +I  LR+K+ +      + + R +GY +
Sbjct: 192 YNTADVYIRYLRQKIDDHFYPKLIHTVRSVGYVL 225


>gi|29375510|ref|NP_814664.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227555037|ref|ZP_03985084.1| response regulator [Enterococcus faecalis HH22]
 gi|255973994|ref|ZP_05424580.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256960052|ref|ZP_05564223.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|257418520|ref|ZP_05595514.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|293383804|ref|ZP_06629711.1| DNA-binding response regulator [Enterococcus faecalis R712]
 gi|293388720|ref|ZP_06633213.1| DNA-binding response regulator [Enterococcus faecalis S613]
 gi|300860072|ref|ZP_07106160.1| putative Response regulator protein GraR [Enterococcus faecalis
           TUSoD Ef11]
 gi|307275343|ref|ZP_07556486.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307278379|ref|ZP_07559454.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|312901532|ref|ZP_07760805.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312906980|ref|ZP_07765976.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312978762|ref|ZP_07790489.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|29342970|gb|AAO80734.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44933475|gb|AAS49391.1| response regulator [Enterococcus faecalis]
 gi|227175824|gb|EEI56796.1| response regulator [Enterococcus faecalis HH22]
 gi|255966866|gb|EET97488.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256950548|gb|EEU67180.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|257160348|gb|EEU90308.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|291078880|gb|EFE16244.1| DNA-binding response regulator [Enterococcus faecalis R712]
 gi|291081877|gb|EFE18840.1| DNA-binding response regulator [Enterococcus faecalis S613]
 gi|300850890|gb|EFK78639.1| putative Response regulator protein GraR [Enterococcus faecalis
           TUSoD Ef11]
 gi|306504885|gb|EFM74080.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306507977|gb|EFM77104.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|310626965|gb|EFQ10248.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|311288469|gb|EFQ67025.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311291327|gb|EFQ69883.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315145787|gb|EFT89803.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315148083|gb|EFT92099.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315163015|gb|EFU07032.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315167938|gb|EFU11955.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315574161|gb|EFU86352.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315581696|gb|EFU93887.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
          Length = 224

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS   +    +   + G DD V KP     ++A++ A+ RR   S N +
Sbjct: 67  IREVSKVPIIFISSRSTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRR---SYNYS 123

Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +T         I +  D    E++GE+  L + E R+L  LM   GK + + ++  A++ 
Sbjct: 124 DTDSEVLSHNGITLNVDNGRMEIRGEMIDLSKNEYRLLYLLMKKHGKILTREKLLRALWD 183

Query: 180 LFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  V++N +  +I++LRKK+        +++K  +GY +
Sbjct: 184 --DERFVDDNTLTVNINRLRKKIEQAGIAGYIETKVGVGYMV 223


>gi|27376207|ref|NP_767736.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
 gi|2769532|emb|CAA11074.1| phosphate regulatory protein [Bradyrhizobium japonicum]
 gi|27349347|dbj|BAC46361.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
          Length = 235

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R      Q+P+I ++        +    +G DD + KP    E+LARV  + R
Sbjct: 62  IELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   S  R  T    G I +  D R     G    L   E R+LE+ + + G+  ++ Q+
Sbjct: 122 R--ASPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 180 LDSVWG-RDIYIDERTVDVHIGRLRKLLNLGREQDPIRTVRGAGYALD 226


>gi|74313564|ref|YP_311983.1| DNA-binding transcriptional regulator QseB [Shigella sonnei Ss046]
 gi|91212442|ref|YP_542428.1| DNA-binding transcriptional regulator QseB [Escherichia coli UTI89]
 gi|110643266|ref|YP_670996.1| DNA-binding transcriptional regulator QseB [Escherichia coli 536]
 gi|117625331|ref|YP_854614.1| DNA-binding transcriptional regulator QseB [Escherichia coli APEC
           O1]
 gi|170018721|ref|YP_001723675.1| DNA-binding transcriptional regulator QseB [Escherichia coli ATCC
           8739]
 gi|170683979|ref|YP_001745293.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           SMS-3-5]
 gi|188495719|ref|ZP_03002989.1| QseB [Escherichia coli 53638]
 gi|191172517|ref|ZP_03034057.1| transcriptional regulatory protein QseB [Escherichia coli F11]
 gi|194431717|ref|ZP_03064008.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012]
 gi|194436837|ref|ZP_03068937.1| transcriptional regulatory protein QseB [Escherichia coli 101-1]
 gi|218560102|ref|YP_002393015.1| DNA-binding transcriptional regulator QseB [Escherichia coli S88]
 gi|218691322|ref|YP_002399534.1| DNA-binding transcriptional regulator QseB [Escherichia coli ED1a]
 gi|218701797|ref|YP_002409426.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI39]
 gi|218706652|ref|YP_002414171.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           UMN026]
 gi|237706225|ref|ZP_04536706.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA]
 gi|253772137|ref|YP_003034968.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162974|ref|YP_003046082.1| DNA-binding transcriptional regulator QseB [Escherichia coli B str.
           REL606]
 gi|256024393|ref|ZP_05438258.1| DNA-binding transcriptional regulator QseB [Escherichia sp.
           4_1_40B]
 gi|293406640|ref|ZP_06650566.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412]
 gi|293412399|ref|ZP_06655122.1| transcriptional regulatory protein qseB [Escherichia coli B354]
 gi|298382380|ref|ZP_06991977.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302]
 gi|300901405|ref|ZP_07119491.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300916867|ref|ZP_07133570.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300931911|ref|ZP_07147208.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300937501|ref|ZP_07152324.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300950767|ref|ZP_07164654.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300958409|ref|ZP_07170549.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300993285|ref|ZP_07180322.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301017281|ref|ZP_07182045.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301020011|ref|ZP_07184143.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301325626|ref|ZP_07219092.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301643606|ref|ZP_07243647.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|306816631|ref|ZP_07450763.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101]
 gi|307139714|ref|ZP_07499070.1| DNA-binding transcriptional regulator QseB [Escherichia coli H736]
 gi|312972713|ref|ZP_07786886.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70]
 gi|331643725|ref|ZP_08344856.1| transcriptional regulatory protein QseB [Escherichia coli H736]
 gi|331648819|ref|ZP_08349907.1| transcriptional regulatory protein QseB [Escherichia coli M605]
 gi|331659309|ref|ZP_08360251.1| transcriptional regulatory protein QseB [Escherichia coli TA206]
 gi|331664635|ref|ZP_08365541.1| transcriptional regulatory protein QseB [Escherichia coli TA143]
 gi|73857041|gb|AAZ89748.1| quorum sensing regulator B [Shigella sonnei Ss046]
 gi|91074016|gb|ABE08897.1| transcriptional Regulatory protein QseB [Escherichia coli UTI89]
 gi|110344858|gb|ABG71095.1| probable transcriptional regulatory protein YgiX [Escherichia coli
           536]
 gi|115514455|gb|ABJ02530.1| transcriptional regulatory protein QseB [Escherichia coli APEC O1]
 gi|169753649|gb|ACA76348.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|170521697|gb|ACB19875.1| transcriptional regulatory protein QseB [Escherichia coli SMS-3-5]
 gi|188490918|gb|EDU66021.1| QseB [Escherichia coli 53638]
 gi|190907185|gb|EDV66784.1| transcriptional regulatory protein QseB [Escherichia coli F11]
 gi|194420073|gb|EDX36151.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012]
 gi|194424319|gb|EDX40306.1| transcriptional regulatory protein QseB [Escherichia coli 101-1]
 gi|218366871|emb|CAR04641.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli S88]
 gi|218371783|emb|CAR19636.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli IAI39]
 gi|218428886|emb|CAR09831.2| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli ED1a]
 gi|218433749|emb|CAR14666.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli UMN026]
 gi|222034749|emb|CAP77491.1| Transcriptional regulatory protein qseB [Escherichia coli LF82]
 gi|226899265|gb|EEH85524.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA]
 gi|242378577|emb|CAQ33364.1| QseB transcriptional activator [Escherichia coli BL21(DE3)]
 gi|253323181|gb|ACT27783.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974875|gb|ACT40546.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli B str. REL606]
 gi|253979031|gb|ACT44701.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli BL21(DE3)]
 gi|284923046|emb|CBG36139.1| two-component system response regulator [Escherichia coli 042]
 gi|291426646|gb|EFE99678.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412]
 gi|291469170|gb|EFF11661.1| transcriptional regulatory protein qseB [Escherichia coli B354]
 gi|294493099|gb|ADE91855.1| transcriptional regulatory protein QseB [Escherichia coli IHE3034]
 gi|298277520|gb|EFI19036.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302]
 gi|299881968|gb|EFI90179.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300305099|gb|EFJ59619.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300314918|gb|EFJ64702.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300355177|gb|EFJ71047.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300400254|gb|EFJ83792.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300415837|gb|EFJ99147.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300449937|gb|EFK13557.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300457459|gb|EFK20952.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300460334|gb|EFK23827.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300847598|gb|EFK75358.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301077990|gb|EFK92796.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|305850196|gb|EFM50655.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101]
 gi|307625369|gb|ADN69673.1| DNA-binding transcriptional regulator QseB [Escherichia coli UM146]
 gi|309703456|emb|CBJ02796.1| two-component system response regulator [Escherichia coli ETEC
           H10407]
 gi|310332655|gb|EFP99868.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70]
 gi|312947587|gb|ADR28414.1| DNA-binding transcriptional regulator QseB [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315288813|gb|EFU48211.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315297717|gb|EFU56994.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|315617296|gb|EFU97904.1| transcriptional regulatory protein qseB [Escherichia coli 3431]
 gi|320176208|gb|EFW51272.1| Two-component system response regulator QseB [Shigella dysenteriae
           CDC 74-1112]
 gi|320180948|gb|EFW55869.1| Two-component system response regulator QseB [Shigella boydii ATCC
           9905]
 gi|320195177|gb|EFW69806.1| Two-component system response regulator QseB [Escherichia coli
           WV_060327]
 gi|323188540|gb|EFZ73825.1| transcriptional regulatory protein qseB [Escherichia coli RN587/1]
 gi|323935972|gb|EGB32267.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323941875|gb|EGB38054.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323951450|gb|EGB47325.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323957822|gb|EGB53536.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323960927|gb|EGB56546.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323966555|gb|EGB61988.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323971849|gb|EGB67074.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323978902|gb|EGB73982.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324005372|gb|EGB74591.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324011978|gb|EGB81197.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|327251811|gb|EGE63497.1| transcriptional regulatory protein qseB [Escherichia coli STEC_7v]
 gi|330909085|gb|EGH37599.1| two-component system response regulator QseB [Escherichia coli
           AA86]
 gi|331037196|gb|EGI09420.1| transcriptional regulatory protein QseB [Escherichia coli H736]
 gi|331042566|gb|EGI14708.1| transcriptional regulatory protein QseB [Escherichia coli M605]
 gi|331053891|gb|EGI25920.1| transcriptional regulatory protein QseB [Escherichia coli TA206]
 gi|331058566|gb|EGI30547.1| transcriptional regulatory protein QseB [Escherichia coli TA143]
 gi|332344981|gb|AEE58315.1| transcriptional regulatory protein QseB [Escherichia coli UMNK88]
          Length = 219

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|312602770|ref|YP_004022615.1| transcriptional regulatory protein [Burkholderia rhizoxinica HKI
           454]
 gi|306431573|emb|CBK52125.1| transcriptional regulatory protein [Burkholderia rhizoxinica HKI
           454]
 gi|312170084|emb|CBW77096.1| transcriptional regulatory protein [Burkholderia rhizoxinica HKI
           454]
          Length = 296

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 6/142 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R   A  + PLI I       + +   D+G DDVV  PI  RE+L RV    RR  V+  
Sbjct: 66  RACYADRRAPLIVIGALEDRASIVHVLDAGADDVVLTPIDPRELLLRVHLAIRRFNVTRR 125

Query: 125 R-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E GP R+  +     + G+   L  RE  I   L ++ G+ V++ QI  A++ 
Sbjct: 126 TDHAGVIECGPYRLDPNTCIVRINGDAVRLTPREFAIAWLLFSHYGEYVSRRQIAGAVWS 185

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             ++ V    +E HI KLRKKL
Sbjct: 186 SSEDIVGRT-LEQHIYKLRKKL 206


>gi|307689741|ref|ZP_07632187.1| hypothetical protein Ccel74_16399 [Clostridium cellulovorans 743B]
          Length = 205

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 80/155 (51%), Gaps = 2/155 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
           ++IR     P+I +S        +   D G DD + KP     +LA++ A+ RR    N 
Sbjct: 49  KVIRKKLDTPVIIVSSRSEEGEQIRGIDLGADDYITKPFSMGILLAKINAVLRRANNQNE 108

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   I++F +  + +V+ +   L + E ++L+   ++  K VA+  +   ++   +E
Sbjct: 109 NVIEVNGIKLFCESMELKVKDKAISLSKNEYKLLKIFFSSYEKVVAREDLLETLWD-DEE 167

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            V++N +  +I++L+K+L+       +++KR +GY
Sbjct: 168 FVDDNTLTVNITRLKKRLKENGIQLTIETKRGVGY 202


>gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 233

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 10/152 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV AI RR +
Sbjct: 61  LEVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSE 120

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +         +N    G +++  D    +  GE   L  RE  +L +L ++ G+ + + 
Sbjct: 121 FAVDTQESEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIED 211


>gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 229

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  S +P+I ++        +   D G DD V KP    E+LAR+    +R  
Sbjct: 62  IEILRRLRESSDIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVALKRKI 121

Query: 121 VSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V      +  I++ +   D E      + E   L ++E  +L YL+ N+ K +++ +I  
Sbjct: 122 VVVKENTSNLIKIKNLSIDLEKYSVTFKSEDIELTKKEFDLLLYLVENKNKVLSRDKILE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD   + NVV+ +I  LR K+ +K     + + R +GY +
Sbjct: 182 TVWG-FDYFGDTNVVDVYIRYLRSKIDDKYKEKYIYTVRGVGYVV 225


>gi|157370255|ref|YP_001478244.1| DNA-binding transcriptional regulator PhoP [Serratia proteamaculans
           568]
 gi|157322019|gb|ABV41116.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 223

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           GE  L L R  RAH  ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+
Sbjct: 56  GEDGLSLIRRWRAHQMKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQAL 115

Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR   +++      P ++    R+  V  +   L   E  I+E L+ N GK V+K  + 
Sbjct: 116 MRRNSGLASQVIVLPPFQIDLSRRELSVNEQQIKLTAFEYTIIETLIRNAGKVVSKDSLM 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +Y    E  E + ++  + +LRKK++ +   + + + R  GY  D
Sbjct: 176 LQLYP-DAELRESHTIDVLMGRLRKKVQAEYPQEVITTVRGQGYRFD 221


>gi|306825719|ref|ZP_07459058.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432080|gb|EFM35057.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 260

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  SQVP++ +S        +   + G DD + KP   + +LA+V  + RR        
Sbjct: 102 IRKISQVPIMFLSSRDQAMDIVMAINMGADDFITKPFDQQVLLAKVQGLLRRSYEFGRDE 161

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QGEV  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 162 SLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRILFEHAGNIVARDDLMRELWN-SDF 220

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +     +++K+ +GY +
Sbjct: 221 FIDDNTLSVNVARLRKKLEEQGLAGFIETKKGIGYGL 257


>gi|227875752|ref|ZP_03993880.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269976698|ref|ZP_06183674.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus mulieris
           28-1]
 gi|306819028|ref|ZP_07452745.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307700351|ref|ZP_07637391.1| putative subtilin biosynthesis regulatory protein SpaR [Mobiluncus
           mulieris FB024-16]
 gi|227843694|gb|EEJ53875.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269935063|gb|EEZ91621.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus mulieris
           28-1]
 gi|304648221|gb|EFM45529.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307614562|gb|EFN93791.1| putative subtilin biosynthesis regulatory protein SpaR [Mobiluncus
           mulieris FB024-16]
          Length = 220

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 17/164 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +IR     P++ ++        +   + G DD + KP    E+ A+V A  R     
Sbjct: 62  LVELIRNRVDYPIVFLTAKVGESDAIQGLEIGADDYIRKPFSLGELRAKVKAHLR----- 116

Query: 123 NNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             R + G I+VFS G         +  V  +   L   E  I E+L  N G+  +K QI 
Sbjct: 117 --RDQRGRIQVFSLGSVRFDMGVHEVLVGNKAVNLTPTEYSICEFLALNHGQVFSKEQIH 174

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++G ++EA  E  +  H+S  R KLR   G DP+ +KR +GY
Sbjct: 175 DEVFG-WNEAAGETSILMHLSNARGKLRQH-GIDPIKNKRGVGY 216


>gi|57234026|ref|YP_181946.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224474|gb|AAW39531.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 222

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 104/225 (46%), Gaps = 30/225 (13%)

Query: 7   DRALVKDGYIALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +RAL + G++  +  DG S E F  NS EF+  +      D + IE            + 
Sbjct: 17  ERALGEAGHVVEYACDGASGEYFAANS-EFDLLILDIGLPDKNGIE------------VC 63

Query: 65  RIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKV 121
           R +RA   V  ++ ++   SL + +   D+G DD + KP    E+ AR+ A+ RR  L+V
Sbjct: 64  RKLRADGIVTSVLMLTARDSLDSKVKGLDAGADDYLCKPFACDELFARIRALQRRPPLRV 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                ET  I  F +       G+    L   E +ILEY + N G  + ++ +   ++G 
Sbjct: 124 LPV-VETAGIS-FDNVSHRVCGGKTEIKLTAAEYKILEYFITNPGVLITRSMLEEHLWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD----PVDSKRFLGYSID 221
                E   V + I  L KKLR KLG+D    P+ + R  GY +D
Sbjct: 181 ----AESTSVSNTIDSLIKKLRQKLGWDAKSGPIKTLRGAGYRLD 221


>gi|228991507|ref|ZP_04151455.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
 gi|229008403|ref|ZP_04165865.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228752861|gb|EEM02428.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228768231|gb|EEM16846.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
          Length = 224

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 13/189 (6%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+++  ++   I   L+  G   +E+ R +RA    P+I ++   S+   +   DSG DD
Sbjct: 38  LEAAIEKNYDIILLDLMLPGLNGIEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGP--------IRVFSDGRDPEVQGEVFPL 149
            + KP    E+LAR+  I+RR      + E+ P        +++  + R      E+  L
Sbjct: 98  YLPKPFAIEELLARIRVIFRR----EQKEESKPTLLLAFKDLQLHVESRTLRKNDEIIEL 153

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L   M N  + + +  +   ++G +D  VE N+V+ ++  LR KL      + 
Sbjct: 154 TNKEFELLLMFMKNINRVLTRDILLEQVWG-YDAIVETNIVDVYVRYLRNKLHGVDKEEY 212

Query: 210 VDSKRFLGY 218
           + + R  GY
Sbjct: 213 IQTVRGAGY 221


>gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 228

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S++P+I ++        +   + G DD + KP   +E+LARV A+ RR  
Sbjct: 65  IEVLKWIRKSSEIPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVMRRYN 124

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 E      + + ++  +   +G    +P +E  +L YL +N+ K   + Q+   +
Sbjct: 125 YDEKNTEIINYSDLVIDANSYNVVYKGVEIKMPPKEFELLHYLASNKNKVFTREQLLCEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G +D   +   V+ HI +LR+K+
Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKI 207


>gi|170690183|ref|ZP_02881350.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170144618|gb|EDT12779.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 231

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 6/150 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIR 132
           P++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR      + A+ G + 
Sbjct: 82  PVLILTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRGHGQEASVAQCGTLV 141

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
             S  R   + GE   L  RER +LE L+   G+ + K  +   I+GL DE+V  + +E 
Sbjct: 142 YDSVDRGFTLDGEPLALTPRERSVLEVLILRNGRAINKETLSEKIFGL-DESVNADAIEI 200

Query: 193 HISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++ +LRKKL R+ +G   + + R LGY ++
Sbjct: 201 YVYRLRKKLERSSVG---IVTLRGLGYLLE 227


>gi|220923033|ref|YP_002498335.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219947640|gb|ACL58032.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 223

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPI 131
            P+I ++    +   +   ++G DD + KP    E+ AR++A+ RR   + N   T G +
Sbjct: 73  TPVIILTARDQISDRIAGLNAGADDYLIKPFDLFELTARISAVGRRYSGNPNPLVTIGDL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    R     G+  PL  RE  + E L+      ++KTQ+   +Y  FD  VE N +E
Sbjct: 133 DIDLAARSVHKGGKPVPLTAREWSLFEALIQRPNALLSKTQLEERLYS-FDAEVESNTIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +I +LRK    K+G D +++ R +GY +
Sbjct: 192 VYIGRLRK----KIGADVIETVRGMGYRL 216


>gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 233

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 10/152 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV AI RR +
Sbjct: 61  LEVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSE 120

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +         +N    G +++  D    +  GE   L  RE  +L +L ++ G+ + + 
Sbjct: 121 FAVDTQENEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIED 211


>gi|311064059|ref|YP_003970784.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310866378|gb|ADP35747.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 245

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 20/143 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147
           G DD V KP    E++AR+ AI RR   +  + E  PI       +  D  D    G   
Sbjct: 100 GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVSRAGYAI 156

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E ++L YLM N G+ ++K QI   ++  +D   +  +VES+IS LRKK+   +  
Sbjct: 157 DLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDGIMVT 215

Query: 208 DP----------VDSKRFLGYSI 220
           D           +++KR +GY I
Sbjct: 216 DDNGEQHKVTPLIETKRGIGYMI 238


>gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 271

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 20/206 (9%)

Query: 30  NSLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIG 77
           ++L +E W  S+A +  +A+               ++G  + +  L RI +    VP++ 
Sbjct: 40  SALRYEGWDVSTALDGQTAVRLARETVPDVIVLDIMLGDIDGLEVLRRIRQQQEGVPVLF 99

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRV 133
           ++   S++  +    +G DD V KP    E++AR+  + RR   S  R E     G + +
Sbjct: 100 LTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRRAGASAARDEARLVVGDLTL 159

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D  + +  G+   L   E  +L YLM N  + ++K+QI   ++  +D   + N+VE +
Sbjct: 160 DEDSHEVDRAGQEIHLTATEFELLRYLMRNARRVMSKSQILDRVWQ-YDFGGQANIVELY 218

Query: 194 ISKLRKKLRNKLGFDP-VDSKRFLGY 218
           IS LR+K+    G +P + + R +GY
Sbjct: 219 ISYLRRKI--DAGREPMIHTLRGVGY 242


>gi|255656953|ref|ZP_05402362.1| DNA-binding response regulator [Clostridium difficile QCD-23m63]
 gi|296452205|ref|ZP_06893913.1| transcriptional regulator FeuP [Clostridium difficile NAP08]
 gi|296877559|ref|ZP_06901590.1| transcriptional regulator FeuP [Clostridium difficile NAP07]
 gi|296258944|gb|EFH05831.1| transcriptional regulator FeuP [Clostridium difficile NAP08]
 gi|296431410|gb|EFH17226.1| transcriptional regulator FeuP [Clostridium difficile NAP07]
          Length = 223

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 4/165 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++LE  R    +   P+I ++    +       D G DD + KP    E+ AR+ A+ 
Sbjct: 59  GIEILEFFR--SNNLNTPVIIVTARDGVNELAKGLDLGADDYIVKPFQIIELRARIQAVI 116

Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    +N   E+GPI +    R   V  E   L  +E  I+EYL +     V+   I  
Sbjct: 117 RRFYGRTNPNIESGPITINPSSRKVYVYNEEVTLGTKEFDIVEYLASRYPDIVSGIDISE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  + + +  +V+  HI++L+KKLR   G + + + R +GYSI
Sbjct: 177 HVYDEYFDPLS-SVLRVHIARLKKKLREVAGKEIIITTRGIGYSI 220


>gi|221369433|ref|YP_002520529.1| Transcriptional regulator, winged helix family [Rhodobacter
           sphaeroides KD131]
 gi|221162485|gb|ACM03456.1| Transcriptional regulator, winged helix family [Rhodobacter
           sphaeroides KD131]
          Length = 221

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 15/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA----FLIGKG 57
            ++++D  ++ DG        G+ L GF          + A  D    EA     ++  G
Sbjct: 4   ILIVEDDPVLADGLQV-----GLRLAGFGPEAVGTLEDARAALDAGRFEAMVLDLMLPDG 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             +  L  +  A   VP++ ++    L   +   D G DD + KP    E+ AR+ A+ R
Sbjct: 59  SGLDLLAELRAAREAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGR 118

Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   ++  R E   + +     +    G    L  RE  +L  LMA+    ++K QI   
Sbjct: 119 RPAALATPRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQ 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG + E +E N +E H+ KLR KL +  GF  +++ R +GY +
Sbjct: 179 LYG-WQEEIESNAIEVHVHKLRAKLGH--GF--IETVRGVGYRL 217


>gi|254486503|ref|ZP_05099708.1| two-component response regulator [Roseobacter sp. GAI101]
 gi|214043372|gb|EEB84010.1| two-component response regulator [Roseobacter sp. GAI101]
          Length = 223

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 6/165 (3%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + +R A +  P++ ++   S+   +   ++G DD + KP    E+ ARVAA+ RR 
Sbjct: 60  LTLVKTLRGAGNTTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVAALARRP 119

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +V   +     G + +    R     G+   L  RE  +LE+L+  +G+   +T +  A+
Sbjct: 120 QVLEQDTVLRAGDLEMHLITRKVTRGGQDIDLLPREFALLEHLLRRKGRVQTRTMLLEAV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + FD     NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 180 WDISFDPMT--NVVETHISRLRAKVDKPFDRELIHTVRGAGYRID 222


>gi|229020091|ref|ZP_04176872.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229026320|ref|ZP_04182679.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|229032496|ref|ZP_04188464.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228728865|gb|EEL79873.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228735036|gb|EEL85672.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228741201|gb|EEL91418.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 231

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223


>gi|239625973|ref|ZP_04669004.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239520203|gb|EEQ60069.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 224

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 3/129 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149
           F +G DD + KP+   E++ R+ A+ RR ++++ R  T G + +  D       G    L
Sbjct: 92  FMAGTDDYMTKPVDEEEMVLRIRALLRRAQIASERKITIGNVILDYDSLSVTRDGSSQTL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           PR+E  +L  L++  GK   + Q+   I+G+  E  ++N +  HI++LRK+  +   F  
Sbjct: 152 PRKEFYLLYKLLSYPGKIFTRIQLMDEIWGIESET-DDNTINVHINRLRKRFEHYPEF-T 209

Query: 210 VDSKRFLGY 218
           +++ R LGY
Sbjct: 210 IETIRGLGY 218


>gi|83816273|ref|YP_446921.1| response regulator receiver domain-containing protein [Salinibacter
           ruber DSM 13855]
 gi|294508860|ref|YP_003572919.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
 gi|83757667|gb|ABC45780.1| response regulator receiver domain protein [Salinibacter ruber DSM
           13855]
 gi|294345188|emb|CBH25966.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
          Length = 247

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 89/163 (54%), Gaps = 8/163 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+   +R H  ++P++ ++   +++  +    +G DD + KP    E+LAR+ A+ RR+
Sbjct: 64  LEVCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRV 123

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +   R E GP+ +    R     GE   L   E  +L +LMA  G+ +++  I   +
Sbjct: 124 DRPSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEV 183

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
           +G  FD     N+++ +++ +R+KL +++G + P+++ R +GY
Sbjct: 184 WGHDFDRGT--NLIDVYVNYVRRKL-DEVGCEAPIETVRGIGY 223


>gi|332686214|ref|YP_004455988.1| two-component response regulator BceR [Melissococcus plutonius ATCC
           35311]
 gi|332370223|dbj|BAK21179.1| two-component response regulator BceR [Melissococcus plutonius ATCC
           35311]
          Length = 227

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 7/140 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  S +P+I IS   +    +   + G DD V KP     ++A++ A+ RR     +VS
Sbjct: 70  IRKQSNIPIIFISSRNTNMDMIMAMNMGADDFVTKPFQMDVLIAKINALIRRTYNYSEVS 129

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           + +     I +  D    E+ G+V  L + E R+L  LM   GK + + ++  A++   D
Sbjct: 130 SEKISHNGITLNIDNGSMEINGQVIDLSKNEYRLLYILMKKNGKILTREKLLRALWE--D 187

Query: 183 EA-VEENVVESHISKLRKKL 201
           E  V++N +  +I+++R+K+
Sbjct: 188 ERFVDDNTLTVNINRIRRKI 207


>gi|323972872|gb|EGB68071.1| heavy metal response regulator [Escherichia coli TA007]
          Length = 290

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|300931183|ref|ZP_07146528.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|300460990|gb|EFK24483.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|323948330|gb|EGB44317.1| heavy metal response regulator [Escherichia coli H120]
          Length = 290

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|257459719|ref|ZP_05624828.1| DNA-binding response regulator [Campylobacter gracilis RM3268]
 gi|257443144|gb|EEV18278.1| DNA-binding response regulator [Campylobacter gracilis RM3268]
          Length = 220

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 10/169 (5%)

Query: 54  IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           I KG+    L  + ++  + P I  +   +L      F SG DD + KP   +E+L RV 
Sbjct: 55  IPKGDGFSLLKELRKSGDRTPAIFATSLNTLDDLEVGFKSGCDDYLKKPYELKELLLRVN 114

Query: 114 AIYRRLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++ +R   S+N  E   I    + +   ++    G    L  +ER +L   + N+ + ++
Sbjct: 115 SLIKR-SFSHNFDEFVTIDDEFKFYFASKELRRSGVPVALSNKERELLALFLQNKNRLLS 173

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           K +IFSAIY  FDE   E  + ++I    K LR  LG + + ++R  GY
Sbjct: 174 KDEIFSAIYA-FDETPSEEALRTYI----KNLRRVLGEEHIINRRNAGY 217


>gi|242372310|ref|ZP_04817884.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242350039|gb|EES41640.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 221

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           +R  S VP++ IS        +     G DD + KP +    +A++ A+ RR   L VSN
Sbjct: 66  MRKVSNVPIMFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVSN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  +    ++  D      +GE   L   E +IL+ L  N GK V++T +    +   + 
Sbjct: 126 DELDVKGCKLILDEAKLIKEGEAVQLSLTELQILKMLFQNEGKYVSRTTLIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +++N +  ++++LRKKL + +G D  +++K+ +GY +
Sbjct: 185 FIDDNTLAVNMTRLRKKL-SSIGVDHFIETKKNVGYRV 221


>gi|148378320|ref|YP_001252861.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153933406|ref|YP_001382720.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936909|ref|YP_001386271.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|168177660|ref|ZP_02612324.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|148287804|emb|CAL81870.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929450|gb|ABS34950.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932823|gb|ABS38322.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|182671215|gb|EDT83189.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S++P+I IS   S    +   ++G DD + KP +   I+A++ +  RR      
Sbjct: 66  RRIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   ++ + +  + E + E   + ++E  +LEYLM    K V +  +   I+
Sbjct: 126 PKVDEKIVELQGLKFYKERSEIEFKDERVIITKKEGILLEYLMKKYPKVVNRDFLLEKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
               E VEEN +  ++S++RK+L +KLG  D +++ R +GY ++
Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HKLGIEDGIETVRGVGYRLN 227


>gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 237

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 12/175 (6%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L  +  ED  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 38  LDRALSEDFDAILLDLMLPDLNGLEIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQ-------GEV 146
            + KP    E+LAR+ A+ RR+K+    S N+     +  F D              G+ 
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVKIEKDASKNKLPRQKVVKFKDLTIETANRIVHRGDGKT 157

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L +RE  +L  L+ N+   V + Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 158 VDLTKREYNLLMTLIENKNNVVGRDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211


>gi|15839182|ref|NP_299870.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|9107813|gb|AAF85390.1|AE004066_4 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
          Length = 266

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 17/227 (7%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL--------IGK 56
           +  R L+ D  +A+   D V+       EFE    S ARE  + I   +        +  
Sbjct: 36  VQKRVLIVDDEVAI--RDMVAF-ALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLP 92

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   LEL R  R  S   ++P+I ++        +   ++GVDD + KP   RE+LAR+ 
Sbjct: 93  GTSGLELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIR 152

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEV-QGEV-FPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR +  +        ++  DG    V  G V  P+   E R+L + M +  +  ++T
Sbjct: 153 AVMRRTRDDDEDGSVAIGKLRIDGAAHRVYAGHVQVPIGPTEYRLLHFFMTHSERVYSRT 212

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           Q+   ++G     +EE  ++ HI +LR+ L      D V + R  GY
Sbjct: 213 QLLDHVWG-SGVYIEERTIDVHIRRLRRTLEPYGLDDMVQTVRSAGY 258


>gi|187776443|ref|ZP_02802733.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4196]
 gi|189406170|ref|ZP_02826753.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC508]
 gi|12516077|gb|AAG56982.1|AE005418_10 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362175|dbj|BAB36130.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767096|gb|EDU30940.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4196]
 gi|189376147|gb|EDU94563.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC508]
 gi|209766628|gb|ACI81626.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766630|gb|ACI81627.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766632|gb|ACI81628.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766634|gb|ACI81629.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766636|gb|ACI81630.1| putative 2-component transcriptional regulator [Escherichia coli]
          Length = 239

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 58  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 117

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 118 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 177

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 178 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 233


>gi|154243815|ref|YP_001409388.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154162937|gb|ABS70152.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 235

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 29/194 (14%)

Query: 22  DGVSLEGFNSLEFEEWLQSSAREDVSA--IEAFLIG----KGEKVLELPRIIRAHSQVPL 75
           +G  LE F SL       S+ARE V+    + FLI      G+ +  +  + RA +  P+
Sbjct: 23  EGFVLERFGSL-------SAARESVAVDRYDLFLIDLGMPDGDGIDFVRAVRRAGNTTPI 75

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAE 127
           + I+    L   +   DSG DD + KP    E+ AR  A+ RR        L V N   +
Sbjct: 76  LVITARNGLGDRVGGLDSGADDYLVKPFDMPELAARCRALLRRPGACLGTTLNVENLDFD 135

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           T         R+  + G+V  +P RE  +LE LM   G  V+K  +   +Y L  E V  
Sbjct: 136 T-------IAREVRISGQVIHVPPRECALLERLMRRAGHVVSKASLEDTMYALSSE-VSP 187

Query: 188 NVVESHISKLRKKL 201
           N +E+ +S+LR++L
Sbjct: 188 NALEAVVSRLRRRL 201


>gi|317122445|ref|YP_004102448.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592425|gb|ADU51721.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 258

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 18/198 (9%)

Query: 14  GYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           G+  +   DGVS L  F++L      Q  A   V+A+   L+  G    E+   +R  SQ
Sbjct: 48  GFAVVEAGDGVSALAAFDALV----RQGRA---VAAVVLDLMLPGLDGWEVCERLRERSQ 100

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAE 127
           VP++ ++    +   L  F  G DD V KP   RE++AR+ A+ RR       V    AE
Sbjct: 101 VPILMLTARGEIHERLHGFHLGADDYVVKPFDPREVVARIRALSRRAAPAPGGVRPAGAE 160

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G + +    R   V G    L R E  +L  L  +RG+ +++ QI   + G  D 
Sbjct: 161 PALHFGRLTIDPGARTVTVDGHPVSLTRTEFDLLYTLAQHRGQTLSRQQILDRLRG-GDY 219

Query: 184 AVEENVVESHISKLRKKL 201
             +E V++SHI  LR+KL
Sbjct: 220 FGDERVIDSHIRNLREKL 237


>gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 4/159 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           L R+    S  P++ ++    ++  +   D+G DD + KP    E+LARV A+ RR    
Sbjct: 65  LRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKTGD 124

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             SN+R     + + +D R+    G+   L  +E  +L   M N  + +++  I   I+G
Sbjct: 125 DSSNHRLTYEDLIMDTDAREVIRSGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +D + E NV+E +I+ LR+K     G   + + R  GY
Sbjct: 185 -YDYSGESNVLEVYIAMLRQKTEEHGGKRLIQTIRGAGY 222


>gi|229014045|ref|ZP_04171169.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229062531|ref|ZP_04199844.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228716814|gb|EEL68505.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228747301|gb|EEL97180.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 231

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223


>gi|260587759|ref|ZP_05853672.1| DNA-binding response regulator DltR [Blautia hansenii DSM 20583]
 gi|260542024|gb|EEX22593.1| DNA-binding response regulator DltR [Blautia hansenii DSM 20583]
          Length = 224

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKV 121
           L  I +  + +P++ ++    +   ++  D+G +D + KP H +E+LAR+ A+ R +   
Sbjct: 63  LKEIRKKGNLIPVLLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAMTRVQTGQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  + G + +     +       F L  +E +++E +M+N G  ++  +    I+G +
Sbjct: 123 TGSILKMGNVTLNRAAFELSTSKGSFRLANKEFQMIELMMSNPGVLISAERFMEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   E NVV  +IS LRKKL        +   R +GYS++
Sbjct: 182 DSEAEINVVWVYISYLRKKLAALQADIQIKVTRSVGYSLE 221


>gi|257413137|ref|ZP_05591538.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257204550|gb|EEV02835.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 234

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 17/169 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I +S        +   + G DD V KP +  E++ARV +  RR     N A
Sbjct: 71  IREESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQLGNAA 130

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E+       G + +  D ++  V GEV  L   E  IL  L+ N+GK  +  QI+ +I+ 
Sbjct: 131 ESSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYESIWN 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223
             D    +N V  HI  +R+K+      +P + +       +GY ID N
Sbjct: 191 -EDAIGADNTVAVHIRHIREKIE----INPKEPRYLKVVWGVGYKIDKN 234


>gi|192360483|ref|YP_001983964.1| response regulator receiver domain-containing protein [Cellvibrio
           japonicus Ueda107]
 gi|190686648|gb|ACE84326.1| Response regulator receiver domain protein [Cellvibrio japonicus
           Ueda107]
          Length = 219

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 6/150 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
           QV ++ ++   S    +   D+G DD + KP    E+LAR+  + RRL  +N      GP
Sbjct: 72  QVQVLILTARDSTNAKVLGLDAGADDYLTKPFALDELLARLRVLERRLGTANTAMIHVGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + +      + G+   L RRE  +L+ L+ N G    +  + + +Y   DE V  N +
Sbjct: 132 LSLNTTQHLVLLNGDALVLSRREYMLLKALVENLGIIQTRESLEAKLYSWNDE-VASNAI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E HI  LRKKL   L F  + + R +GY +
Sbjct: 191 EVHIHNLRKKL--PLNF--IRTIRGVGYVV 216


>gi|77465432|ref|YP_354935.1| transcriptional regulator [Rhodobacter sphaeroides 2.4.1]
 gi|77389850|gb|ABA81034.1| transcriptional regulator, winged helix family [Rhodobacter
           sphaeroides 2.4.1]
          Length = 221

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 19/226 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------G 55
            ++++D  ++ DG        G+ L GF          + A  D    EA ++      G
Sbjct: 4   ILIVEDDPVLADGL-----QVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDG 58

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G ++L   R  R    VP++ ++    L   +   D G DD + KP    E+ AR+ A+
Sbjct: 59  SGLELLAELRAAR--EAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRAL 116

Query: 116 YRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR   ++  R E   + +     +    G    L  RE  +L  LMA+    ++K QI 
Sbjct: 117 GRRPAALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIE 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +YG + E +E N +E H+ KLR KL +  GF  +++ R +GY +
Sbjct: 177 EQLYG-WQEEIESNAIEVHVHKLRAKLGH--GF--IETVRGVGYRL 217


>gi|227327067|ref|ZP_03831091.1| DNA-binding transcriptional regulator PhoP [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
 gi|301069182|dbj|BAJ11970.1| response regulator PehR [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 229

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++  +  +  ++       D++ ++  L    E  +
Sbjct: 3   ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGL--PDEDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  RAH  ++P++ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIRRWRAHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    R+  + G    L   E  I+E L+ N+GK V+K  +   +Y 
Sbjct: 121 GLASQVISLPPFEIDLSRRELVIHGGPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK++     D + + R  GY  D
Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQAEAPDVITTVRGQGYRFD 221


>gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 6/140 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121
           IRA S VP+I ++   + +  +     G DD + KP  H E+ AR+ A+ RR      ++
Sbjct: 68  IRAMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVLRRSGANIAEL 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GPI++    R   V G+  PL  +E  +L   M N G    + Q+   I+ + 
Sbjct: 128 QQKYVVFGPIKIDEIARKVSVHGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERIWDI- 186

Query: 182 DEAVEENVVESHISKLRKKL 201
           D       V++HI  LR KL
Sbjct: 187 DYVGGTRTVDTHIKTLRIKL 206


>gi|104784360|ref|YP_610858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas entomophila L48]
 gi|95113347|emb|CAK18075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas entomophila L48]
          Length = 229

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 105/217 (48%), Gaps = 32/217 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G++ LE E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRA--ETG-----PI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           A+ RR   S++ A  E G     PI  RV  DGR  E       +   E R+L++ M ++
Sbjct: 119 AVLRRTGPSDSEAPIEVGGLLLDPISHRVTIDGRPAE-------MGPTEYRLLQFFMTHQ 171

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +   + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 172 ERAYTRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|330505347|ref|YP_004382216.1| DNA-binding response regulator CreB [Pseudomonas mendocina NK-01]
 gi|328919633|gb|AEB60464.1| DNA-binding response regulator CreB [Pseudomonas mendocina NK-01]
          Length = 226

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 4/162 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + +R  S+VP+I ++        +   + G DD V KP   RE+ ARV AI +R+ 
Sbjct: 61  FEVCKRLRRFSEVPVIFLTARSEEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRVA 120

Query: 121 VSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                A + P   ++          G+   L R E R+L  L+    +  ++ Q+  A+ 
Sbjct: 121 PREAPAASAPSIFQIDDAAFRIHYHGQALSLTRHEFRLLRTLLGQPRRVYSREQLLDAL- 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           G+  EA  E  ++SHI  +R KLR      +P+ + R LGYS
Sbjct: 180 GVASEAGYERNIDSHIKSVRAKLRAIAPSEEPIQTHRGLGYS 221


>gi|315651808|ref|ZP_07904812.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315485938|gb|EFU76316.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 225

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 23/211 (10%)

Query: 2   FVLIDD----RALVKD-----GYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEA 51
            +++DD    R LVKD     GYI L  +DG           EE L+     +D+  I  
Sbjct: 6   ILVVDDEARMRKLVKDFLSIKGYIVLEAEDG-----------EEALKVFDTNKDIKLILL 54

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            ++       E+   IR +S+VP++ ++     +  L+ +  GVD+ + KP   + ++AR
Sbjct: 55  DVMMPKMDGFEVLEAIRQYSKVPVMMLTARSEERDELEGYKLGVDEYITKPFSPKILVAR 114

Query: 112 VAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V A+ RR +     +   G I V    R   +  +   L  +E  +L Y + N+G  +++
Sbjct: 115 VEAVLRRTVGEPEEKLVAGAIEVDKVARSVYIDKKPVDLSFKEYELLTYFIENKGIALSR 174

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +I S+++  +D   +   +++H+ KLR K+
Sbjct: 175 EKILSSVWN-YDYFGDARTIDTHVKKLRAKM 204


>gi|238923173|ref|YP_002936686.1| two component transcriptional regulator, winged helix family
           [Eubacterium rectale ATCC 33656]
 gi|238925077|ref|YP_002938594.1| two component transcriptional regulator, winged helix family
           [Eubacterium rectale ATCC 33656]
 gi|238874845|gb|ACR74552.1| two component transcriptional regulator, winged helix family
           [Eubacterium rectale ATCC 33656]
 gi|238876753|gb|ACR76460.1| two component transcriptional regulator, winged helix family
           [Eubacterium rectale ATCC 33656]
 gi|291535286|emb|CBL08398.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 232

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 101/207 (48%), Gaps = 9/207 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLI-GKGE 58
           + +L DD +L+ DG +     +   +E   ++ E +++L    R D+  ++  L  G G 
Sbjct: 4   ILLLEDDVSLI-DGLVYSLKKNEFDVEVARTVCEAKQYLSELDRYDLLILDVTLPDGTGF 62

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            V E  R+ + + Q+P+I ++      + +   DSG DD + KP    E+ +R+ A+ RR
Sbjct: 63  DVCE--RVRKENQQIPIIFLTASDEEVSIIRGLDSGGDDYITKPFKLGELCSRIRALLRR 120

Query: 119 LKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             VS    N   E G I +   G    ++G+   L   E R+L  L+ N  + V +  I 
Sbjct: 121 AGVSKSEKNTSMECGDITIDLLGSRATLKGKALDLTSAEYRLLCLLVRNANRVVTRDIIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
           + ++      V++N +  ++ +LR+K+
Sbjct: 181 NELWDDTGNFVDDNTLSVYVRRLREKV 207


>gi|228984473|ref|ZP_04144650.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775176|gb|EEM23565.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 209

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR      + 
Sbjct: 55  IRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQE 114

Query: 127 ET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A
Sbjct: 115 EIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYA 173

Query: 185 VEENVVESHISKLRKKL 201
                V++H+  +R KL
Sbjct: 174 GSTRTVDTHVKTMRLKL 190


>gi|229169580|ref|ZP_04297283.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613855|gb|EEK70977.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 231

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223


>gi|269926249|ref|YP_003322872.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789909|gb|ACZ42050.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 227

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 91/183 (49%), Gaps = 10/183 (5%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRIIRAHSQVPLIGISDYPS 83
           EGFN +   + LQ+  R  +   +  ++      +   E+ + IR  S  P+I ++    
Sbjct: 23  EGFNVIAASDGLQALRRWQMDHPDVVVLDANMPKMNGFEVCKRIREQSNTPVILLTALND 82

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-----RAETGPIRVFSDGR 138
               +  F  G DD V KP  HR++  R+ A+ +R   +++     +  +GP+ +  D  
Sbjct: 83  EDHIVQGFHIGADDYVTKPFSHRQLAMRIRAVAKRNSSASSVDFSGKLVSGPLSLDRDTH 142

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
           +  +      L   E ++L  L+AN G+ V  +++    +G +DE  +E+++++HIS +R
Sbjct: 143 EVLLDDREIHLTPTEFKLLYILVANAGRVVPSSRLVEYAWG-YDEG-DESLLKTHISHIR 200

Query: 199 KKL 201
           +KL
Sbjct: 201 RKL 203


>gi|92116259|ref|YP_575988.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799153|gb|ABE61528.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 233

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 13/196 (6%)

Query: 33  EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLD 89
           E + WL+     D+  ++  L   G   +EL R +RA     Q+P+I ++        + 
Sbjct: 37  EADTWLKERT-PDLVVLDWML--PGLSGIELCRRLRARPETRQLPIIMLTARGEESERVR 93

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGE 145
              +G DD V KP    E+LARV  + RR   S  R  T    G I +  D       G 
Sbjct: 94  GLATGADDYVVKPFSVPELLARVKGLLRR--ASPERLATILSFGDIELDRDKHRVARSGR 151

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L   E R+LE+ + + G+  ++ Q+  +++G  D  ++E  V+ HI +LRK +    
Sbjct: 152 PIDLGPTEYRLLEFFLEHPGRVFSREQLLDSVWG-RDIYIDERTVDVHIGRLRKLINPGG 210

Query: 206 GFDPVDSKRFLGYSID 221
             DP+ + R  GY++D
Sbjct: 211 EPDPIRTVRGAGYALD 226


>gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL103PA1]
          Length = 226

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 14/166 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R    V +I ++   S    +   + G DD V KP  HRE++AR+ A+ RR   
Sbjct: 62  EVCRQLRQRGNVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGSP 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++VS +  E   +R+  +  +  V+G V  L  +E  +LE L+ N G+ + +  +   +
Sbjct: 122 EVEVSPDVLEESGVRMDVERHEVSVEGTVVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +G  D   +   ++ HI +LR K+ +    DP     + + R LGY
Sbjct: 182 WG-ADYVGDTKTLDVHIKRLRAKIED----DPSRPVRITTVRGLGY 222


>gi|325284496|ref|YP_004257035.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324316670|gb|ADY27781.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 13/217 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD A+++     L  +    LE  +     E L    R D++ ++  L   G   
Sbjct: 4   ILIVDDDPAILEILRAYLKAEGHTVLEACDGYSAREQL---PRADLAILDWML--PGVSG 58

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++L R  RA    +P++ ++     +  L   D GVDD V KP   RE++ARV A+ RR+
Sbjct: 59  VDLAREARASGLTLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVVARVRALLRRV 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V    A  G +R+   G    + GE   L + E  +L  L  + G    + ++   ++G
Sbjct: 119 GVQEEIA-VGDLRIDLRGHSASLSGERLELSKLEFDLLSALAQHPGMAWPRERLLERVWG 177

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
             D    E VV+ HI+ LRKKL      D  D+ RF+
Sbjct: 178 -SDFPGTERVVDVHITGLRKKL-----GDTSDTPRFI 208


>gi|312897337|ref|ZP_07756763.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310621555|gb|EFQ05089.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 227

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L + IR  S VP++ ISD   + T +  F+ G +D + KP + RE+ AR+ A+    K
Sbjct: 63  LLLCKEIRKISAVPVLIISDCDDITTKVKAFEYGANDYLTKPFNCRELSARIHALLHSGK 122

Query: 121 -VSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            V NN   T  ++   V  D  +  ++     L ++E  +L +L+ N+   +++  I   
Sbjct: 123 AVCNNFRRTLTLKDLLVDLDAHEVYIKERRISLTKKEFSLLTFLIHNKNIVLSRHSILEH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     NVV+ +I  LR KL        + + R +GY +
Sbjct: 183 VWG-YDFFGTTNVVDVYIRYLRSKLCTDRHESYITTVRGVGYIV 225


>gi|294012877|ref|YP_003546337.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
 gi|292676207|dbj|BAI97725.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
          Length = 233

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 14/173 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +V    R +   + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ 
Sbjct: 62  GIEVCRRLRRMNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVL 121

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR++     A  G    F+D      G      G+V PL   E R+L++ + + G   ++
Sbjct: 122 RRVRP----ALAGETLTFADVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSID 221
            ++  +++G  D  +E   V+ HI +LRK + N  G   D + + R  GY++D
Sbjct: 178 ERLLDSVWGQ-DSDIELRTVDVHIRRLRKAI-NADGRHRDIIRTVRSAGYALD 228


>gi|223986660|ref|ZP_03636651.1| hypothetical protein HOLDEFILI_03973 [Holdemania filiformis DSM
           12042]
 gi|223961373|gb|EEF65894.1| hypothetical protein HOLDEFILI_03973 [Holdemania filiformis DSM
           12042]
          Length = 221

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 45  DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D+  ++  L G  GE V+E      +   +P+I +S    +   +D   SG  D + KP 
Sbjct: 47  DLILLDLMLPGISGEAVME------SVPDIPVIIVSARGEIDDKVDLLRSGAADYITKPF 100

Query: 104 HHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
             RE+LAR+    R      N   T GP+ +    +     G+   L R E  IL+ LM 
Sbjct: 101 DTRELLARIEVQLRPAAGRRNPDLTCGPLTLSPLLQQVSAGGQTVKLTRTETAILKLLMR 160

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N G+ + K+++   I     + + EN ++ HIS LR KLRN    + ++S   +G+ +
Sbjct: 161 NPGQVITKSEMLEQISEDTPDGM-ENSLKVHISHLRAKLRNIWDQEIIESVWGIGFKL 217


>gi|160938728|ref|ZP_02086080.1| hypothetical protein CLOBOL_03623 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438427|gb|EDP16186.1| hypothetical protein CLOBOL_03623 [Clostridium bolteae ATCC
           BAA-613]
          Length = 240

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R +   P+I  +    +   +D  D+G DD + KP    E+LAR+ A+ RR         
Sbjct: 80  RMNITTPVIITTALDGINDRIDGLDAGADDYLVKPYAAGELLARIRALTRRPGNFKQSPS 139

Query: 128 TGPIRVFSDGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                +  D    E+ G +    L +RE  ++EYL+ N+G+ + +  I S I+G  D  V
Sbjct: 140 AACSNISLDPEKRELTGPLGTLQLSKRESALMEYLIRNKGQVLPRGLILSYIWG-PDSDV 198

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           EE  ++++I  LR++L++      + +   +GY ++
Sbjct: 199 EEGNLDNYIYFLRRRLKSIGALPQIKTVHGIGYRLE 234


>gi|3724162|emb|CAA09795.1| PhoP protein [Yersinia enterocolitica]
          Length = 200

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 98/200 (49%), Gaps = 5/200 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKK 200
             E  E + ++  + +LRKK
Sbjct: 181 DAELRESHTIDVLMGRLRKK 200


>gi|118580643|ref|YP_901893.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118503353|gb|ABK99835.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 222

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 25/193 (12%)

Query: 22  DGVSLEGF------NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPL 75
           D +S  GF      N L+   W++     D+  ++  L G+    LE+ + IR+ S VP+
Sbjct: 20  DYLSQSGFETHRLRNGLDVVPWVRER-NPDLILLDLMLPGRDG--LEICKEIRSFSSVPI 76

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETG 129
           I  +        L   + G DD + KP   RE++ARV A+ RR      +K S    +  
Sbjct: 77  IMTTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRTDGGTTIKASGLTLDEL 136

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE-AVEEN 188
            +R   + RD E+    F       ++L++L AN G+  ++ Q+   IY   DE  V + 
Sbjct: 137 RLRAVLNDRDLELTAVEF-------KLLQFLAANPGRIYSRQQLMDRIYP--DERIVSDR 187

Query: 189 VVESHISKLRKKL 201
            ++SHI KLR+K+
Sbjct: 188 TIDSHIKKLRRKI 200


>gi|302539344|ref|ZP_07291686.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302448239|gb|EFL20055.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 257

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 10/160 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA  ++P+I ++   S    +    +G DD + KP   RE++AR+ A+ RR + 
Sbjct: 99  EVCRGIRAAHEIPVIAVTARGSELDRVLGLQAGADDYLVKPYGFRELMARMEAVMRRARP 158

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   A T   GP+R+ +  R+  + GE     R+E  +L  L ++    + +  +   ++
Sbjct: 159 TRPVAATITCGPLRIDAGTREVTLNGEPVETTRKEFDMLYLLASHPDTVIPRKMLMQQVW 218

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G   ++     V++H+S     LRNK+G   + + R +G+
Sbjct: 219 G---DSWSRRTVDTHVS----TLRNKIGAGWIITIRGVGF 251


>gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1]
 gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1]
 gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 239

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----------GPIRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR K+      T            +++  +  +   Q
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVTESSDEESITIAELKILPEFYEAYFQ 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202
           G    L  +E  +L YL  N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233


>gi|189010643|ref|ZP_02808375.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4076]
 gi|189403619|ref|ZP_02796631.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404363|ref|ZP_02788923.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4501]
 gi|208810230|ref|ZP_03252106.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816557|ref|ZP_03257677.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819204|ref|ZP_03259524.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398847|ref|YP_002271082.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328961|ref|ZP_03445042.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           TW14588]
 gi|188999283|gb|EDU68269.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359672|gb|EDU78091.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366025|gb|EDU84441.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4501]
 gi|208724746|gb|EDZ74453.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730900|gb|EDZ79589.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739327|gb|EDZ87009.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160247|gb|ACI37680.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4115]
 gi|217318308|gb|EEC26735.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           TW14588]
 gi|326342377|gb|EGD66158.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. 1044]
          Length = 233

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 52  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 111

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 112 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 171

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 172 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 227


>gi|160895466|ref|YP_001561048.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361050|gb|ABX32663.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 262

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 9/154 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--G 129
           Q P++ +S   +    +    +G DD + KP    E+ AR+ A+ RR ++     E    
Sbjct: 102 QTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQIPAPAREMRLA 161

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            +R+    R  E  G+   L  RE R+L +LM +  + V +T +  +++   FD   + N
Sbjct: 162 DLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVWDYRFDP--QTN 219

Query: 189 VVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           V++ HIS+LR K+    GF+P  + + R +GYS+
Sbjct: 220 VIDVHISRLRGKVDK--GFEPALIHTVRGVGYSL 251


>gi|158319827|ref|YP_001512334.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140026|gb|ABW18338.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 226

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 18/217 (8%)

Query: 8   RALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           +  VK GY   +  DG V LE ++  E++  +       +  +E     + +  ++   I
Sbjct: 18  KGFVKKGYAVDYAVDGEVGLELYHINEYDLIILDLNLPSMDGLEVLETIREKDKMQRVLI 77

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKVSNNR 125
           + A S VP             +   D G +D + KP    E+ ARV ++ R  L   N  
Sbjct: 78  LSARSTVP-----------DRIRGLDMGANDYLPKPFDFAELDARVRSLLRCELIQHNTS 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            +   I + +  +   V G +FPL  RE  I EYL+ +RG  ++   +   I+   D  V
Sbjct: 127 IQYDNIILDTRAKSILVNGVIFPLAPREYAIFEYLLIHRGTVISAETLIEHIW---DSEV 183

Query: 186 E--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               +V++ HIS +RKKLR   G + + + R  GY I
Sbjct: 184 NMFTDVIKVHISNIRKKLREASGKEYIVTVRGKGYLI 220


>gi|53717517|ref|YP_105500.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|53722482|ref|YP_111467.1| two-component response regulator [Burkholderia pseudomallei K96243]
 gi|67640031|ref|ZP_00438853.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|76819653|ref|YP_335649.1| two component response regulator [Burkholderia pseudomallei 1710b]
 gi|124382891|ref|YP_001024486.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126443643|ref|YP_001063069.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126447886|ref|YP_001078807.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126457711|ref|YP_001076011.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|167002751|ref|ZP_02268541.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|167744626|ref|ZP_02417400.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167820246|ref|ZP_02451926.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167828621|ref|ZP_02460092.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167850081|ref|ZP_02475589.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167898689|ref|ZP_02486090.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167907033|ref|ZP_02494238.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167915377|ref|ZP_02502468.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167923219|ref|ZP_02510310.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217425234|ref|ZP_03456729.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|254174447|ref|ZP_04881109.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254185252|ref|ZP_04891841.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254186777|ref|ZP_04893293.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254194369|ref|ZP_04900801.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254204224|ref|ZP_04910583.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254209196|ref|ZP_04915543.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254264284|ref|ZP_04955149.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254301543|ref|ZP_04968987.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|254355518|ref|ZP_04971798.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52212896|emb|CAH38932.1| putative two-component response regulator [Burkholderia
           pseudomallei K96243]
 gi|52423487|gb|AAU47057.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76584126|gb|ABA53600.1| two component response regulator [Burkholderia pseudomallei 1710b]
 gi|124290911|gb|ABN00181.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126223134|gb|ABN86639.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126231479|gb|ABN94892.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126240740|gb|ABO03852.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147745108|gb|EDK52189.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147750419|gb|EDK57489.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148023611|gb|EDK82673.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157811217|gb|EDO88387.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157934461|gb|EDO90131.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695493|gb|EDP85463.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|169651120|gb|EDS83813.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184215844|gb|EDU12825.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217391839|gb|EEC31866.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|238520671|gb|EEP84129.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|243061632|gb|EES43818.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254215286|gb|EET04671.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 219

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 55  GKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+G   L+  R +RA  S VP+I ++    +   +   ++G DD + KP    E+ ARV+
Sbjct: 57  GRG---LDFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVS 113

Query: 114 AIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR   + N   + G + V    R     G    L   E  +LE L+ + G  ++K Q
Sbjct: 114 AVARRYSGNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +Y   DE V  N +E H+S+LRK    KLG + +++ R LGY +
Sbjct: 174 LEERLYSFSDE-VGSNTIEVHVSRLRK----KLGAELIETVRGLGYRL 216


>gi|331266502|ref|YP_004326132.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|326683174|emb|CBZ00792.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 227

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 100/220 (45%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D AL++D  + L    G  ++     +F++  Q   + D   I   L   GE   
Sbjct: 4   ILVIEDEALIRDEIVILLEKTGYQVDKLT--DFKDTSQQVLQYDTDLIILDLNLPGETGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +++   VP++ ++    L+  +     G D+ + KP      LAR+  I +R + 
Sbjct: 62  QICKNLKSKRSVPILVLTSREQLKDEIYALKLGADEYLTKPFKKERFLARIENILKRYEG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  E     +        + G    LP+ + ++LE L+      V K ++   ++   
Sbjct: 122 RQNLLEKDNFLLDRQTYTLYINGHSILLPQNQGKLLETLLVTNAPVVTKEELSMKLWN-T 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E ++EN ++ +I++L+K ++       V S R +GY ++
Sbjct: 181 TEFIDENALQVNIARLKKVMKQAGIALQVKSVRGIGYKLE 220


>gi|312129843|ref|YP_003997183.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311906389|gb|ADQ16830.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 230

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 7/153 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I ++     +  ++ F+ G DD + KP   RE+LAR+    +R       ++   ++
Sbjct: 77  IPIIMLTALGETEDKIEGFERGADDYLVKPFDFRELLARINVFIKR-NAGAGASQENTLK 135

Query: 133 VFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           + +     DG+     G    L  +E  +LEYL+ N+GK V+K +I SA++   ++    
Sbjct: 136 IANLVMDLDGKTVMRDGVKIDLTPKEFSLLEYLIKNKGKVVSKAEISSALWEPNNQQ-SL 194

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           NVVE +I+ LRKK+        + +K  +GY I
Sbjct: 195 NVVEVYINFLRKKIDKDFIPKLIHTKTGMGYII 227


>gi|119510916|ref|ZP_01630039.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119464444|gb|EAW45358.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 230

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 21/225 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L +  Y+  +  DG    G+        L+ S  E   AI  +++ K    LEL + +
Sbjct: 18  RTLTQQKYLVDWVIDGDEAWGY--------LEDSWTEYTLAIFDWMLPKISG-LELCKRL 68

Query: 68  RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           R H + +P++ ++   S++  +   D+G DD + KP    E+LAR+ A+ RR        
Sbjct: 69  RKHQNSLPILMLTAKDSMEDKVTGLDAGADDYLVKPFGMAELLARLRALQRRSPQFQPQK 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L V N   + G   V S      VQ     L  +E ++LEY M +  + +   QI + ++
Sbjct: 129 LTVGNLTLDYGNNVVSSQDAVGNVQE--ITLTYKEFQLLEYFMKHPNQILTTEQIRNQLW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +  E V  NVV + +  LR+KL N    + +++   LGY  ++N
Sbjct: 187 EVNAEPV-SNVVAAQMRLLRRKLVNGGCENMIETLHGLGYRFNFN 230


>gi|160878862|ref|YP_001557830.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427528|gb|ABX41091.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 228

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 26/171 (15%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           IR  S  P+I +S        +  F+ G+DD V KP   +EI+ RV AI RR +  V+N 
Sbjct: 67  IRKKSNTPVIMLSARGEEYDKVLGFELGIDDYVVKPFSSKEIMLRVNAILRRTQKSVANF 126

Query: 125 RAETGPI--------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +E G I              +VF DG    VQ  + P   +E  +L +L+ N+ K V +
Sbjct: 127 DSEEGHIIFRKEGFEADMTAYKVFIDG----VQANMAP---KEYDLLFFLIRNKNKAVPR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I + ++G FD   ++  +++H+  LR+ L     F  + + R LGY  +
Sbjct: 180 ENILTEVWG-FDYCGDDRTLDTHMKLLRRSLGPYANF--ITTLRGLGYRFE 227


>gi|193066637|ref|ZP_03047672.1| heavy metal response regulator [Escherichia coli E22]
 gi|293446346|ref|ZP_06662768.1| transcriptional regulatory protein YedW [Escherichia coli B088]
 gi|298381094|ref|ZP_06990693.1| two-component system response regulator YedW [Escherichia coli
           FVEC1302]
 gi|81244982|gb|ABB65690.1| putative 2-component transcriptional regulator [Shigella boydii
           Sb227]
 gi|192925712|gb|EDV80371.1| heavy metal response regulator [Escherichia coli E22]
 gi|291323176|gb|EFE62604.1| transcriptional regulatory protein YedW [Escherichia coli B088]
 gi|298278536|gb|EFI20050.1| two-component system response regulator YedW [Escherichia coli
           FVEC1302]
          Length = 239

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 58  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 117

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 118 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 177

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 178 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 233


>gi|238797563|ref|ZP_04641060.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii
           ATCC 43969]
 gi|238718560|gb|EEQ10379.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii
           ATCC 43969]
          Length = 220

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 108/221 (48%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G      ++G + +   +    + L  S++  +  ++  L  +   VL
Sbjct: 3   LLIVEDDELLQRGIAMALTNEGYACDCTGTAAEAQSLLQSSQYSMVILDLGLPDQDGAVL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR + 
Sbjct: 63  -LRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  +   + +    +   +Q +   +  +E  IL  L+   G+ V +  +   +Y  
Sbjct: 122 QSDNLVQQDDLSLNLSTQQVCLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYTW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+ +  N +E HI  LR+    KLG D + + R +GY ++
Sbjct: 182 NDD-LGSNTLEVHIHNLRR----KLGKDRIRTVRGIGYRLE 217


>gi|325970799|ref|YP_004246990.1| transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324026037|gb|ADY12796.1| two component transcriptional regulator, winged helix family
           [Spirochaeta sp. Buddy]
          Length = 239

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 33/235 (14%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA------IEAFLI 54
           +  +++D  ++++G        G ++ GF +L+       SARE  +       I+  ++
Sbjct: 11  LIYIVEDHEVIREGVRQYLELSGYAVRGFANLK-------SAREAFATQTPSLLIQDVML 63

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
             G+      + ++  +  P+I ++        +  F+ G DD ++KP   +E++ RV A
Sbjct: 64  PDGDG-FAFVKQLKEKTDCPVIFMTARTEESDRILGFELGADDYISKPFSPKELVLRVQA 122

Query: 115 IYRRLK-----VSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGK 166
           + RR +     +S+     G   +  D +D  +    GE+  L   E RILEYL+ N   
Sbjct: 123 VLRRYRNGSYEISDGLLYVGEHWMSFDEQDHRLVVDDGEIV-LTAAEWRILEYLVQNSHH 181

Query: 167 RVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            V+++QI       FD +VE  E VV++HI    K +R+KLG  P +++ R  GY
Sbjct: 182 LVSRSQILEEC---FDYSVESYERVVDTHI----KNIRSKLGDGPWIETVRGYGY 229


>gi|300857676|ref|YP_003782659.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685130|gb|ADK28052.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205415|gb|ADL09757.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302329969|gb|ADL20163.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275653|gb|ADO25552.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 231

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 21/204 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG +      +EFE       + D+  +   L+  G    ++ + +R 
Sbjct: 21  LRKEGFEVVVAGDGPT----ALVEFE-------KNDIDIVLLDLMLPGMSGTDVCKRLRK 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRA 126
            S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    +V++   
Sbjct: 70  VSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGEPQVADYEE 129

Query: 127 E------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E       G +R+  +     V GE   +P +E  +LEYLM N G+ + + Q+   I+G 
Sbjct: 130 EGDDILGGGRVRMDVERHTVTVAGENISMPLKEFDLLEYLMRNSGRVLTRGQLIDRIWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
            D   +   ++ H+ +LR K+  +
Sbjct: 189 ADYVGDTKTLDVHVKRLRSKIEEE 212


>gi|255321050|ref|ZP_05362220.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262379549|ref|ZP_06072705.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255301874|gb|EET81121.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262299006|gb|EEY86919.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 219

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 7/161 (4%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R H +Q P+I ++   S+   ++  D G +D + KP    E+ AR+ +  R L+
Sbjct: 61  EILKTLRQHQAQTPVIFLTARDSISDRVEGLDLGANDYLVKPFSLEELSARIRSQMRNLQ 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++      I +    +  + +GE   L  RE +IL  LM +    V + Q+  +IY 
Sbjct: 121 AGQSQTLIWNNICLDPKAKTVQQEGESRDLTAREFQILYKLMQHPNHVVTREQLEESIYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE VE N +E +I +LRK    KLG   + + R LGY +
Sbjct: 181 WGDE-VESNAIEVYIYQLRK----KLGSQTIRTIRGLGYRM 216


>gi|171777476|ref|ZP_02919212.1| hypothetical protein STRINF_00039 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283254|gb|EDT48678.1| hypothetical protein STRINF_00039 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 225

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 2/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +   +VP+I ++    L+  +   D G DD + KP    E+LAR+    R+  ++
Sbjct: 59  LKRVRQMGMEVPIIFLTAKSQLEDRVLGLDLGADDYMIKPFEAEELLARIRLRTRQSSIT 118

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  + G + +  D R+  V      L  +E  ++E  + N  K + K Q+   ++G  
Sbjct: 119 QVNHLKFGNLILNLDTRELSVAEREVKLSNKEFLLMETFLRNSKKIIPKNQLILKVWGPL 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE+ + N +E  IS LRKKLR       + + + +GYS++
Sbjct: 179 DES-DYNQLEVFISFLRKKLRFLAASAVIKTTKGVGYSLE 217


>gi|317404641|gb|EFV85039.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 220

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----T 128
           +P++ ++   +    +   D+G DD + KP H  E+LARV A+ RR    +N A      
Sbjct: 73  MPVLILTARSNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRR---HSNHASAQWRC 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           GP+ + +      V G+   L   E ++L  LM + G+ V++  +   IY   D   + N
Sbjct: 130 GPLMLDTRLARATVDGQPLNLTSHEFKVLAVLMQHAGEVVSRGDLIEHIYA-QDHDRDSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  I +LRKKL      D +++ R LGY +
Sbjct: 189 TIDVFIGRLRKKLPA----DTIETVRGLGYRL 216


>gi|303234315|ref|ZP_07320955.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia
           magna BVS033A4]
 gi|302494568|gb|EFL54334.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia
           magna BVS033A4]
          Length = 220

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            EL R +R     P++ ++   +     +    G DD + KP    E+++RV A  RR  
Sbjct: 61  FELCRNVREKVDCPILFLTAKSTEADVAEGLAIGGDDYIRKPFTPLELVSRVKAHLRREE 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V ++    G IR   + ++ +++GE     + E  I E L  ++G+  ++  I   + G
Sbjct: 121 RVHHSYLSFGDIRFLLNAKEIQIKGETIKFTKMEYEICELLARHKGQVFSREHILEQVGG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + E+    +VE HI  +RKK  +    DP+ +   +GY
Sbjct: 181 FWTESESAAIVE-HIKNIRKKF-STYQLDPIKTIWGVGY 217


>gi|293396538|ref|ZP_06640814.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291420802|gb|EFE94055.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 204

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           GE  + L R  RAH  ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+
Sbjct: 37  GEDGMSLIRRWRAHQVKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQAL 96

Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR   +++      P ++    R+  V      L   E  I+E L+ N GK V+K  + 
Sbjct: 97  MRRNSGLASQVIVLPPFQIDLSRRELSVNDRPIKLTAFEYTIIETLIRNAGKVVSKDSLM 156

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +Y    E  E + ++  + +LRKKL+ +   + + + R  GY  D
Sbjct: 157 LQLYP-DAELRESHTIDVLMGRLRKKLQAEYPQEVITTVRGQGYRFD 202


>gi|225570249|ref|ZP_03779274.1| hypothetical protein CLOHYLEM_06345 [Clostridium hylemonae DSM
           15053]
 gi|225161044|gb|EEG73663.1| hypothetical protein CLOHYLEM_06345 [Clostridium hylemonae DSM
           15053]
          Length = 221

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 14/204 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNS---LEFEEWLQ-SSAREDVSAIEAFLI-GKG 57
           ++ DDR L +   IAL      + EGF +     + E L+ +  R D+  ++  L  G G
Sbjct: 5   IIEDDRLLNRALNIAL------NKEGFETNCVYTYREGLRMAQERNDLLLLDISLPDGNG 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +EL R I     +P I ++        L  FD G DD V KP   + +L RV A+ R
Sbjct: 59  ---IELYREILKTRSIPAIFLTARDEEADMLTAFDEGADDYVVKPFPMKVLLKRVEAVLR 115

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R    + R     + ++   +   ++     L  +E R+LE++M +RG+ ++K  I   +
Sbjct: 116 RGADQSGRLSWEGLCLYQKAKRVCLENREIQLTPKEYRLLEFMMEHRGQVLSKESILEHV 175

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           + +  + V +N V   +++L+KK+
Sbjct: 176 WDIDGQFVGDNTVSVTVNRLKKKI 199


>gi|170768311|ref|ZP_02902764.1| DNA-binding response regulator PhoP [Escherichia albertii TW07627]
 gi|170123077|gb|EDS92008.1| DNA-binding response regulator PhoP [Escherichia albertii TW07627]
          Length = 223

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 105/218 (48%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R++   +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E + ++  + +LRKK++ +   + + + R  GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHEVITTVRGQGY 218


>gi|149916162|ref|ZP_01904684.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Roseobacter sp. AzwK-3b]
 gi|149810017|gb|EDM69866.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Roseobacter sp. AzwK-3b]
          Length = 219

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI 131
            P+I ++    +   ++  ++G DD + KP    E+ AR+ ++ RR   + N     GPI
Sbjct: 73  TPVIILTALDQVTDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYCGNPNPIISHGPI 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V          G+   L  RE  + E  +A  G+ ++K Q+   +Y  F   VE N +E
Sbjct: 133 DVDLAAHSVHRDGKPVQLTAREWALFEAFLARPGQLLSKAQLEEKLYE-FGAEVESNTIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            H+S+LRK    KLG   ++++R +GY +
Sbjct: 192 VHVSRLRK----KLGAGIIETERGMGYRL 216


>gi|302552564|ref|ZP_07304906.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470182|gb|EFL33275.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 268

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 20/207 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +   AI++             ++   + +  L R+ R    VP++ +
Sbjct: 60  ALRYEGWQIRSAGDGQGAIQSARDFRPDAVVLDMMLPDMDGLAVLGRLRRELPDVPVLFL 119

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134
           +   +++  +    +G DD V KP    E++AR+  + RR   ++ R+E+    G + + 
Sbjct: 120 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSESMLVVGDLTLD 179

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +    G+   L   E  +L +LM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 180 EDSHEVTRAGDNIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 238

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           S LR+K+    G +P + ++R  GY I
Sbjct: 239 SYLRRKI--DAGREPMIHTRRGAGYLI 263


>gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
 gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
          Length = 246

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 14/169 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +   +VP++ ++     Q  +     G DD V KP    E++AR+ AI RR +  + 
Sbjct: 71  RIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEPDE 130

Query: 125 RA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   + +  D  D    G    L   E ++L YLM N G+ ++K+QI + ++  +
Sbjct: 131 ETHIIKVADLEINEDSHDVTRCGMPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ-Y 189

Query: 182 DEAVEENVVESHISKLRKKL----------RNKLGFDPVDSKRFLGYSI 220
           D   +  +VES+IS LRKK+          + +     +++KR +GY I
Sbjct: 190 DWGGDAAIVESYISYLRKKIDGIEITDDSGKPQKVVPLIETKRGIGYMI 238


>gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 63  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 122

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 123 KQEQQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204


>gi|300777987|ref|ZP_07087845.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300503497|gb|EFK34637.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 224

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 4/149 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G K+LE   + +   Q  +I IS   +L   ++    G DD + KP H  E++ARV +
Sbjct: 57  GNGLKILE--ELKKQQKQDGVIIISAKNALDDKIEGLKLGADDYLTKPFHLSELMARVYS 114

Query: 115 IYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR +  S+N  +   +++    +   V  E   L ++E  +L Y + N+ K ++K+ +
Sbjct: 115 VIRRKQFSSSNVVKQNELQIDLLAKTVTVNNETISLTKKEFDLLIYFIGNKNKVISKSTL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKL 201
              + G L D     + V +H+  L+KKL
Sbjct: 175 AEHLSGDLADMLDNHDFVYAHVKNLKKKL 203


>gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IRA    P++ I+   S+   +   D+G DD + KP    E+LAR+ A++RR+ 
Sbjct: 62  MEVCRRIRAAKSTPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVH 121

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              N      +  F D       R  +   E   L +RE  +L   M N    + +  + 
Sbjct: 122 PEAN----AQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALL 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
             ++G FD  VE NVV+ ++  LR+KL      D  D +R++
Sbjct: 178 DKVWG-FDAEVETNVVDVYVRYLRQKL------DEHDKERYI 212


>gi|239825816|ref|YP_002948440.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239806109|gb|ACS23174.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 233

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL  +IR     P+I +S     +  +     G DD ++KP   +E+ AR+    RR +
Sbjct: 63  MELCSMIRDRVDCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLRREE 122

Query: 121 V--SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              SN R       +  D    EV  +G    L ++E  I++ LM N+    +K +IF +
Sbjct: 123 RIRSNERQLLSSKNITIDLLANEVFCKGVKLHLTKKEYEIIKLLMLNKNMVFSKERIFES 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDWN 223
           ++GL  E+  E V ES I  +RKK+R+    DP  S  K   G    W+
Sbjct: 183 VWGLDSESQLETVTES-IKNIRKKIRS---LDPEHSYIKTLYGLGYKWD 227


>gi|160879822|ref|YP_001558790.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428488|gb|ABX42051.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 224

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E   I+R+  +++P++ +S           F  G+DD + KP+   E++ R+ A+ RR K
Sbjct: 62  EFTEILRSVQNELPILMVSAKQLPADRKKGFQVGIDDFMTKPVDAEEMVLRIKALLRRAK 121

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++ R    G + +  D      +GE   LP++E ++L  L++  GK   + Q+   I+G
Sbjct: 122 ITSERKIMIGNVVLDEDSLSVTREGETQVLPQKEFQLLFKLLSYPGKIFTRIQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              ++  E V   H+ +LR++      F  +DS R LGY
Sbjct: 182 TESDSGWETVT-VHVGRLRRRFEGWPEFQ-IDSVRGLGY 218


>gi|49081814|gb|AAT50307.1| PA3077 [synthetic construct]
          Length = 224

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 2/150 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           Q P++ ++   +LQ  LD FD+G DD + KP    E+L R+ A+ RR      R +   +
Sbjct: 74  QTPVLMLTALDTLQDKLDGFDAGADDYLLKPFELPELLVRLQALSRRRSGQAQRLQVDDL 133

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +  D R     G    L     +ILE LM      V + Q+  +++G  DE  E N + 
Sbjct: 134 VMDLDSRQASRGGTPLALSPTAWKILECLMRASPALVTREQLGRSVWG--DEPPESNTLN 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            H+  LR  +        + +   +G+ ++
Sbjct: 192 VHMHHLRSTVDKGFATPLIHTLHSVGFQLE 221


>gi|295397798|ref|ZP_06807865.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
 gi|294973967|gb|EFG49727.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
          Length = 358

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 9/207 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D   A     G  +  F +L   E L+         I   L+  G   L
Sbjct: 134 ILIVDDEASILDIVEAYLSAKGYQV--FRALSGNEALKKVDIVQPDLIVLDLMLPGLSGL 191

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++   + +  L+    G DD + KP   +E++ARV  + RR++ 
Sbjct: 192 EVCKKIRDSSTVPIIMLTAKTAEKDILEGLSLGADDYITKPFSPKELVARVETVLRRVQP 251

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E G + ++ D +    QGE   L   E  +L  L ++  +  ++ Q+  A+
Sbjct: 252 EYREEKWSFEEGLLVIYPDRKQVFKQGEEIILTPTEYALLALLASHPKRIFSREQLLDAV 311

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRN 203
            GL FD    + V+++HI  +R+K+ +
Sbjct: 312 KGLDFDGT--DRVIDTHIKNIRQKIED 336


>gi|294084834|ref|YP_003551594.1| winged helix family two component transcriptional regulator
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664409|gb|ADE39510.1| two component transcriptional regulator, winged helix family
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 230

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 20/229 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKV 60
             L+DD   +      +   +G  ++ +N  + E  LQ  AR+ V  A+    + + + V
Sbjct: 5   IALVDDDQNILTSVSLMLESEGFDVDCYN--DGEAALQGMARQPVELAVLDIKMPRMDGV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + IR +SQ+P+I ++           F  G DD + KP   R +LAR+ A+ RR  
Sbjct: 63  -ELLQKIRKNSQLPVIFLTSKDDELDEALGFGMGADDYITKPFSQRLLLARIRAVLRR-- 119

Query: 121 VSNNRAETGPIRVFSDG---RDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +    +T    V   G    DP+      +GE   L   E  IL+ L +  G    + Q
Sbjct: 120 ATEGVMDTAGPNVIHQGDLVMDPDRHLCSWKGEEVKLTVTEFLILQALASRPGMVKNRDQ 179

Query: 173 IFSAIYG--LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           +  A YG  +F   +++  ++SHI +LR+K+R +   FD +++   +GY
Sbjct: 180 LMDAAYGESIF---LDDRTIDSHIKRLRRKIRAHDNAFDGIETLYGIGY 225


>gi|255523653|ref|ZP_05390620.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512708|gb|EET88981.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 225

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 16/166 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I    Q+P+I +S    L T L+    G DD + KP ++ E++ R+ A+ RR+    N+ 
Sbjct: 67  INEEFQIPIICVSAKDDLGTKLELIRDGADDYITKPFNNEELIVRIGAVLRRM----NKG 122

Query: 127 ET-GPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            T     +F        S+     +  E   L  +E  ILE L+++  K   K  IF ++
Sbjct: 123 RTIDKSNIFGFKDLILDSENHIVTINDEPIELTVKEYSILELLISSPRKVFTKQNIFESV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +   +  ++E VV  H+S LR KL++  G + + +   +GY +  N
Sbjct: 183 WS-EEYIMDERVVTVHVSNLRNKLKH--GEEYIKTVWGIGYKMQDN 225


>gi|188493946|ref|ZP_03001216.1| heavy metal response regulator [Escherichia coli 53638]
 gi|193071320|ref|ZP_03052238.1| heavy metal response regulator [Escherichia coli E110019]
 gi|300899234|ref|ZP_07117505.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300901970|ref|ZP_07119998.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|301304238|ref|ZP_07210353.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|331683515|ref|ZP_08384116.1| transcriptional activator protein CopR [Escherichia coli H299]
 gi|188489145|gb|EDU64248.1| heavy metal response regulator [Escherichia coli 53638]
 gi|192955362|gb|EDV85847.1| heavy metal response regulator [Escherichia coli E110019]
 gi|300357145|gb|EFJ73015.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300405938|gb|EFJ89476.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300840495|gb|EFK68255.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|315253295|gb|EFU33263.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1]
 gi|331079730|gb|EGI50927.1| transcriptional activator protein CopR [Escherichia coli H299]
          Length = 260

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHTLNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|115376427|ref|ZP_01463663.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823253|ref|YP_003955611.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366559|gb|EAU65558.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396325|gb|ADO73784.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 226

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 20/226 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-------EGFNSLEFEEWLQSSAREDVSAIEAFLI 54
            +LIDD   + +      G +G+S+        G  +LE   +       D   ++  + 
Sbjct: 5   VLLIDDDTRMYELLAQYLGQNGISVAHAPDGGRGLAALEGSPY-------DAVLLDVMM- 56

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
             G   LE+ + IRA +QVP++ ++        +   + G DD + KP   RE+LAR+ A
Sbjct: 57  -PGMDGLEVCKRIRAKTQVPILMLTARGDETDRVVGLELGADDYLAKPFSPRELLARLRA 115

Query: 115 IYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + RR + +   +R E   + +   GR+ +V G    L   E  +L  L+   G+ + +  
Sbjct: 116 VLRRAQPTAVADRMEAQGVSIDVAGREVKVNGRPVELTGLEFELLVALVRRAGRVIPRDA 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +     G  D  V E  V+ HIS LR+KL ++ G   + + R +GY
Sbjct: 176 LLGE-AGRSDTVVGERTVDVHISHLRQKLGDE-GGRLIKTVRGVGY 219


>gi|160877446|ref|YP_001556762.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217975283|ref|YP_002360034.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304412081|ref|ZP_07393691.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307305976|ref|ZP_07585722.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|160862968|gb|ABX51502.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217500418|gb|ACK48611.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349631|gb|EFM14039.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911469|gb|EFN41895.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315269648|gb|ADT96501.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 231

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 8/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129
           P++ ++   S Q  ++  D+G DD + KP H +E++AR+ A+ RR   S  +A      G
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRR---SAGKASPLIYNG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  + +   +     E+  L   E ++ E+ M ++G+  +KT +   IY   D  ++ NV
Sbjct: 131 PFSLNTSSLEVRKGEELVNLSGSEYKLFEFFMLHQGEVKSKTVLTEHIYDQ-DFDLDSNV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E  I +LRKKL     ++ +++ R  GY +
Sbjct: 190 IEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|332359755|gb|EGJ37570.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
          Length = 224

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K + N    G +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGEV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V        V  +   L  +E  +L Y + N+   + KTQIF  ++G FD     +VVE
Sbjct: 133 SVNLSTNSTLVADKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTVSVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+       + + R +GY
Sbjct: 192 VYVSKIRKKLKGTAFAKNLHTLRSVGY 218


>gi|332076078|gb|EGI86544.1| transcriptional regulatory family protein [Streptococcus pneumoniae
           GA41301]
          Length = 159

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K + N    G I V       +V+     L
Sbjct: 26  FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVEL 85

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + KTQIF  ++G FD     +VVE ++SK+RKKL+     + 
Sbjct: 86  LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 144

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 145 LQTLRSVGY 153


>gi|317402892|gb|EFV83434.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 229

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA +S +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G +     GR   V  +   L  RE  +LE L+   G+ V+KTQ+   + 
Sbjct: 120 AGGGATLLKHGRLVFDQTGRVATVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKKL    G   V + R LGY ++
Sbjct: 180 E-WGEEVSTNAIEVYVHRLRKKLEPS-GVKIV-TVRGLGYCLE 219


>gi|229082085|ref|ZP_04214567.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228701215|gb|EEL53719.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
          Length = 194

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 11/165 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 28  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 87

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 88  PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 147

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY  +
Sbjct: 148 D--DESFVEENTLNVNITRLRKKF-NELGIENSIETVRGLGYRFN 189


>gi|193077836|gb|ABO12711.2| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
          Length = 220

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GEKVL   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  
Sbjct: 59  GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116

Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R+  +S     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  
Sbjct: 117 RKQTLSQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A+Y  + E +E N +E  I +LRK    K+G   + + R LGY +
Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216


>gi|187934991|ref|YP_001884341.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund
           17B]
 gi|187723144|gb|ACD24365.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund
           17B]
          Length = 227

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 5/137 (3%)

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVS-NNRAETGPIRVFSDGRDPEVQGE 145
           L  F+ G +D + KP    E+ AR+ AI + + K+  +N  E   +++    +   +  E
Sbjct: 88  LKAFNLGANDYLTKPFFMEELKARIIAILKSMGKIKKSNILEFKNMQIDMKVKKVYINNE 147

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L  +  ++LEYL+ N+G  + K QIF  I G   +A  E ++E +IS+LRK+L +K 
Sbjct: 148 ELELNEKLYKLLEYLVINKGVLLFKEQIFDNICGYNSDAATE-IIEVYISRLRKQL-SKY 205

Query: 206 GFDP-VDSKRFLGYSID 221
            +D  + +KR +GY +D
Sbjct: 206 DYDKYLVTKRGMGYLLD 222


>gi|127513276|ref|YP_001094473.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126638571|gb|ABO24214.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 224

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA 126
           +A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR       + 
Sbjct: 68  KAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPQI 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            +GP+ +    +   +      +   E +ILEYLM +  + VAK ++   IYG  D+  +
Sbjct: 128 TSGPLELDLAAKQVTLDQSPMEVTAFEYQILEYLMRHCHEVVAKQRLLDVIYG--DKEGD 185

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 186 PNTIEVMVSRLRKKLTKGGLENPIATIRGQGYKFN 220


>gi|296102850|ref|YP_003612996.1| DNA-binding transcriptional regulator PhoP [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057309|gb|ADF62047.1| DNA-binding transcriptional regulator PhoP [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 223

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E  L L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ 
Sbjct: 57  EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALL 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +  
Sbjct: 117 RRNSGLASQVISLPPFQVDLSRREFSINNEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y    E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 177 QLYP-DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 218


>gi|226312462|ref|YP_002772356.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095410|dbj|BAH43852.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 217

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 4/149 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I ++   S+   +    +GVDD + KP    E+LAR+  + R     +N        
Sbjct: 72  IPVIFLTAKSSVTDKVYGLKAGVDDYMTKPFEGIELLARIENVLRHYNKKSNIINFKDTE 131

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V+ +    +  GE+  L  +E  +L +L+ N+   + + +I   I+G +D   E   +++
Sbjct: 132 VYLEEMKVKKNGEMIELTLKEFELLVFLVQNKNIVLTREKIIEKIWG-YDYVGETRTIDN 190

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           HI KLRKKL  K   D + +   LGY ++
Sbjct: 191 HIQKLRKKLGWK---DEIKTVFKLGYRLE 216


>gi|255279876|ref|ZP_05344431.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
 gi|255269649|gb|EET62854.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
          Length = 246

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 15/199 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRI 66
           R L K+GY+     DG +   +        L +    D++ ++  L +  G  ++   R 
Sbjct: 36  RELEKNGYMVECCSDGETAMFYA-------LNTDYGYDIAIVDRMLPVVDGLTIIRAMR- 87

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
            R + Q+P+I I+   +L   +D  D G DD + KP H RE+LARV A+ RR     + A
Sbjct: 88  -RKNIQIPVIIITGMSALDDRVDGLDGGADDYLVKPFHIRELLARVRALTRRPHQMQD-A 145

Query: 127 E---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           E    G +R  +  R  +       L  +E  +L  LM       ++ Q+   ++G  D 
Sbjct: 146 ELLTCGDLRFDTSTRTLQCSQRKVALTAKEAELLGTLMRQPEAVFSREQLVLKVWG-SDS 204

Query: 184 AVEENVVESHISKLRKKLR 202
            +E   V+++IS LR++LR
Sbjct: 205 DIEPGNVDNYISFLRRRLR 223


>gi|218508024|ref|ZP_03505902.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli Brasil 5]
          Length = 232

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 12/151 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE +  +P + R     P+I ++     +  ++  D G DD + KP    E++AR+ A+ 
Sbjct: 57  GEGLRFIPELRRTGKDTPIIVLTALNEPKERVEGLDLGADDYLGKPFLVEELMARLRAVL 116

Query: 117 RR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR      LK++  R    P+ +        V      LPRRE  +L  L   + K V +
Sbjct: 117 RRPANLAELKITAGRMVIDPLHLSV-----TVDDAPLDLPRRELLVLVALAKRKEKTVLR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             + +A+Y  ++E ++ N +++HIS+LR +L
Sbjct: 172 ATLEAAVYN-YEEEIQSNALDAHISRLRTRL 201


>gi|297200795|ref|ZP_06918192.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712366|gb|EDY56400.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 269

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 20/207 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +   A++              ++   + +  L R+ R    VP++ +
Sbjct: 61  ALRYEGWQIRSAGDGTGAVQTAREFRPDAVVLDMMLPDMDGLAVLGRLRRELPDVPVLFL 120

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134
           +   +++  +    +G DD V KP    E++AR+  + RR   ++ R+++    G + + 
Sbjct: 121 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSDSVLVVGDLTLD 180

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +    GE   L   E  +L +LM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 181 EDSHEVSRAGENIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 239

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           S LR+K+    G +P + ++R  GY I
Sbjct: 240 SYLRRKI--DAGREPMIHTRRGAGYLI 264


>gi|86160425|ref|YP_467210.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776936|gb|ABC83773.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 230

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 6/133 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAET-GPIRVFSDGRDPEVQGEVF 147
           F+ G DD V KP   RE++ R+ A+ RR   + S+   E+ GPIRV  D     V G   
Sbjct: 94  FELGADDYVTKPFSVRELVLRLKAVLRRSAARPSDRPPESVGPIRVDVDAHRAYVDGAEV 153

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E ++L  LM+  G+  ++ Q+   ++ +  E VE   V++H+ +LR+KL +  G 
Sbjct: 154 VLTPLEFKLLTTLMSRLGRVQSREQLLEDVWEMSSE-VETRTVDTHVKRLREKLGS--GR 210

Query: 208 DPVDSKRFLGYSI 220
           D +++ R +GY +
Sbjct: 211 DLLETVRGIGYRL 223


>gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 229

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 4/161 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ RA +Q P+I ++    +   +   D G +D + KP    E+LARV    R++  +
Sbjct: 65  LRRVRRAENQTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHLRKVVQA 124

Query: 123 NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N  +T     ++V     +    GE   L  RE  +L  L+ N+   + + Q+  +++G
Sbjct: 125 ANDNQTLSVADLQVDLHAYEVTRNGEKIELTPREFNLLVCLLKNKNIVLTREQLIESVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + NVV+ +I  LR+K+        + + R +GY+I
Sbjct: 185 -YDYFGDTNVVDVYIRYLRQKVDKNFEIPIIQTVRGVGYTI 224


>gi|115526874|ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520821|gb|ABJ08805.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 234

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA     Q+P+I ++        +    +G DD + KP    E+LARV  + R
Sbjct: 62  IELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   +  R  T    G + +  D R     G    L   E R+LE+ + + G+  ++ Q+
Sbjct: 122 R--AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 180 LDGVWG-RDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|15598273|ref|NP_251767.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107102626|ref|ZP_01366544.1| hypothetical protein PaerPA_01003690 [Pseudomonas aeruginosa PACS2]
 gi|116051074|ref|YP_790096.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890723|ref|YP_002439587.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254236049|ref|ZP_04929372.1| hypothetical protein PACG_02006 [Pseudomonas aeruginosa C3719]
 gi|254241777|ref|ZP_04935099.1| hypothetical protein PA2G_02488 [Pseudomonas aeruginosa 2192]
 gi|296388425|ref|ZP_06877900.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313108385|ref|ZP_07794401.1| putative two-component system regulatory protein [Pseudomonas
           aeruginosa 39016]
 gi|9949184|gb|AAG06465.1|AE004731_13 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115586295|gb|ABJ12310.1| putative two-component system regulatory protein [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126167980|gb|EAZ53491.1| hypothetical protein PACG_02006 [Pseudomonas aeruginosa C3719]
 gi|126195155|gb|EAZ59218.1| hypothetical protein PA2G_02488 [Pseudomonas aeruginosa 2192]
 gi|218770946|emb|CAW26711.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310880903|gb|EFQ39497.1| putative two-component system regulatory protein [Pseudomonas
           aeruginosa 39016]
          Length = 223

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 2/150 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           Q P++ ++   +LQ  LD FD+G DD + KP    E+L R+ A+ RR      R +   +
Sbjct: 74  QTPVLMLTALDTLQDKLDGFDAGADDYLLKPFELPELLVRLQALSRRRSGQAQRLQVDDL 133

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +  D R     G    L     +ILE LM      V + Q+  +++G  DE  E N + 
Sbjct: 134 VMDLDSRQASRGGTPLALSPTAWKILECLMRASPALVTREQLGRSVWG--DEPPESNTLN 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            H+  LR  +        + +   +G+ ++
Sbjct: 192 VHMHHLRSTVDKGFATPLIHTLHSVGFQLE 221


>gi|270292851|ref|ZP_06199062.1| DNA-binding response regulator [Streptococcus sp. M143]
 gi|270278830|gb|EFA24676.1| DNA-binding response regulator [Streptococcus sp. M143]
          Length = 227

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 101/220 (45%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D AL++D  + L    G  ++     +F++  Q   + D   I   L   GE   
Sbjct: 4   ILVIEDEALIRDEIVILLEKAGYQVDKLT--DFKDTSQQVLQYDTDLIILDLNLPGETGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +++   VP++ ++    L+  +     G D+ + KP      LAR+  I +R + 
Sbjct: 62  QICKNLKSKRSVPILVLTSREQLKDEIHALKLGADEYLTKPFKKERFLARIENILKRYEG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  E     +  +     + G    LP+ + ++LE L+      V K ++   ++   
Sbjct: 122 RQNLLEKDNFLLDRNTYTLYINGHSILLPQNQGKLLETLLVATDSVVTKEELSMKLWN-T 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E ++EN ++ +I++L+K ++       V S R +GY ++
Sbjct: 181 TEFIDENALQVNIARLKKVMKQAGIALQVKSVRGIGYKLE 220


>gi|224823765|ref|ZP_03696874.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224604220|gb|EEG10394.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 227

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 34/225 (15%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI- 66
           RAL   GY+     DG++ +   +L+ E +       D+  ++          L LPR+ 
Sbjct: 18  RALTASGYVVDVIHDGLNAD--TALQTEPY-------DLVVLD----------LNLPRLS 58

Query: 67  -------IRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
                  +RA H  +P++ ++ +  L   ++  + G DD + KP    E+ AR+ A+ RR
Sbjct: 59  GKDVLVRLRARHQTLPVLILTAHGELSDKVEGLELGADDYLVKPFELVELEARLKALLRR 118

Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +N     G +      R   +  E   L RRE  +LE LM   G+ V + ++FS +
Sbjct: 119 HQGHDNEPLRCGALVFDKQERLFRLGTERLVLTRREHAVLEALMRRAGQPVNRERLFSQV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           + L DE V    +E +I +LRKKL    G D  + + R LGY ++
Sbjct: 179 FSLDDE-VNPEAIEIYIHRLRKKLE---GSDVAITTLRGLGYLLE 219


>gi|182701575|ref|ZP_02612281.2| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670559|gb|EDT82533.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 288

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 82/159 (51%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR HS+VP+I IS   S    +   ++G DD + KP  +  +LA++  + RR+  S  + 
Sbjct: 123 IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 182

Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +T     G + ++++    E +G    L + E  +L YL  N  K V++  +   ++   
Sbjct: 183 DTDFFKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLFKNINKIVSRDTLLEILWSDT 242

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  +++N +  ++++LRK+L      + + +KR  GY +
Sbjct: 243 D-FIDDNTLSVNVTRLRKRLEEVGITNAIGTKRGQGYML 280


>gi|220920110|ref|YP_002495411.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219944716|gb|ACL55108.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 225

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R+     + P++ ++    +   +   D G DD + KP   RE+ ARV A+ RR    
Sbjct: 63  LKRMRARRGRTPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHSGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++N    G + +    R   V G+   L RRE  ++E L A  G+   K ++   +   F
Sbjct: 123 ADNAIACGNLSLDRAARSASVGGQPLDLTRREWTLIEILAARPGRIFGKAELLDRL-STF 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +E   EN +E  +++LR+KL  + G +P + + R LGY +
Sbjct: 182 EEEPSENALEQIVARLRRKL-AQAGAEPEIRTLRGLGYQV 220


>gi|241662072|ref|YP_002980432.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309779746|ref|ZP_07674503.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|240864099|gb|ACS61760.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308921485|gb|EFP67125.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 235

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+    + +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR    
Sbjct: 66  LKRLRSRGAMLPVLILTAADSVEERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGG 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP+     GR   +  +V  L  RE  +LE L+A  G+ V+K Q+   + G +
Sbjct: 126 GATLVRHGPLAFDQVGRIAYIHDQVVELSAREIGLLEILLARVGRLVSKEQLVDHLCG-W 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E V  N +E +I +LRKK+  + G   + + R LGY ++
Sbjct: 185 GEEVSNNAIEVYIHRLRKKIEVE-GI-RIATVRGLGYCLE 222


>gi|226195970|ref|ZP_03791556.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|225931863|gb|EEH27864.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
          Length = 217

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 55  GKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+G   L+  R +RA  S VP+I ++    +   +   ++G DD + KP    E+ ARV+
Sbjct: 55  GRG---LDFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVS 111

Query: 114 AIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR   + N   + G + V    R     G    L   E  +LE L+ + G  ++K Q
Sbjct: 112 AVARRYSGNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQ 171

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +Y   DE V  N +E H+S+LRK    KLG + +++ R LGY +
Sbjct: 172 LEERLYSFSDE-VGSNTIEVHVSRLRK----KLGAELIETVRGLGYRL 214


>gi|330958496|gb|EGH58756.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 226

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ + +R+ S VP+I I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 62  GRDGMDICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   ++ +A  G ++V          G    L   E R+L     + G+  ++  +   
Sbjct: 122 RRTSAADPQAAKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SHI  LR+KL     G DP+ S   +GY ++ 
Sbjct: 181 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 226


>gi|310780298|ref|YP_003968630.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749621|gb|ADO84282.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 220

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 7/158 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK 120
           + R IR  S++P+I ++   +    L  FD G D+ + KP   + +LARV  + +R   K
Sbjct: 63  ICRKIRKESKIPIIMLTARSTEDDELFGFDLGADEYITKPFSLKILLARVKVLLKRKDTK 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  + G + + S         E+  L  +E  +L  ++ N+   +++ +  + I+G 
Sbjct: 123 TEENSLKVGKLEIDSSSHRVIFFDEILDLTPKEYDMLLMMVENKDIAISRERFLNQIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD   +   V++H+ +LRKKL+ K     + + R +GY
Sbjct: 182 FDYYGDLRTVDTHVKQLRKKLKGK----HIKTVRGVGY 215


>gi|308084106|gb|ADO13169.1| QseB [Edwardsiella tarda 080813]
          Length = 219

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 19/208 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEK 59
           +LI+D  L+ DG  A     G+S  GF+   F + LQ     + +  +A ++     G  
Sbjct: 4   LLIEDDRLIGDGIKA-----GLSKMGFSLDWFTDGLQGMTALESAPYDAVILDLSLPGID 58

Query: 60  VLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            LE+ R  R   H++ P++ ++   +L+  +     G DD + KP    E+ AR+ A+ R
Sbjct: 59  GLEILRRWREAGHAE-PVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIR 117

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   ++ +A+T    G + +        + G   PL  +E  +LE L+ N G+ + ++ I
Sbjct: 118 R---NHGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              +Y  +D+ V  N VE HI  LR+KL
Sbjct: 175 EEKLYS-WDDDVSSNAVEVHIHHLRRKL 201


>gi|325679592|ref|ZP_08159167.1| putative response regulator ArlR [Ruminococcus albus 8]
 gi|324108622|gb|EGC02863.1| putative response regulator ArlR [Ruminococcus albus 8]
          Length = 225

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   + +  +A+F  +  S++  ++ L+  +++  +  + +  I   ++   + +
Sbjct: 3   LLLAEDEKELSNALVAVFKHNNYSVDAVYDGLDAYDYIIGAEYDGI--ILDIMMPGMDGI 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
             L RI     Q P++ ++    ++  +   DSG DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TVLKRIRDKGIQTPVLLLTAKSQVEDRITGLDSGADDYLTKPFAMGELLARIRAMTRRKT 120

Query: 120 KVSNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + + N  + G + +  +      PE  G    L  +E ++LE LM NR   ++  ++   
Sbjct: 121 EFAPNSLKVGNVTLDRERFVISTPE--GGEQKLGNKEFQVLEMLMLNRNVLISTERLMEK 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+G FD   E +VV  +IS +RKKL        + + R +GY+++
Sbjct: 179 IWG-FDAEAEISVVWVYISYIRKKLTAVKADIEIKASRGVGYTLE 222


>gi|229087374|ref|ZP_04219514.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228695942|gb|EEL48787.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 231

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223


>gi|325289148|ref|YP_004265329.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964549|gb|ADY55328.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 228

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 5/154 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
            P++ ++   ++   +  F  G DD + KP + +E+LAR+ ++ RR    +  N      
Sbjct: 72  TPVLLLTAKDNIDDKVKGFKLGADDYLVKPFYRQELLARLESLIRRSGGALKENILNFRD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    R  +++ E   L  R+  ILE+L+ N    V K QIF  I+G FD      VV
Sbjct: 132 LTLNLSNRTVKIRDEELTLAGRQFDILEFLIRNHNSIVTKKQIFDRIWG-FDSDTTITVV 190

Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
           + + S +RK L+ K G+D  + + R +GY I  N
Sbjct: 191 DVYTSNIRKALQKK-GYDKYLKTVRGVGYMITGN 223


>gi|169335013|ref|ZP_02862206.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257751|gb|EDS71717.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
           17244]
          Length = 233

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 108/238 (45%), Gaps = 29/238 (12%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE---EWLQSSAREDVSAIEA-FLIGK 56
           + V+ DD+ +VK   I L      S EG+N  E     E L    +E++  I    ++ K
Sbjct: 6   ILVVDDDKEIVKAINIYL------SNEGYNIFEAYDGYEALSVLEKEEIHLIVLDIMMPK 59

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            + +  + ++ R    VP+I +S        +   + G DD V KP +  E++ARV ++ 
Sbjct: 60  LDGIATITKV-REKQNVPVIFLSAKSEDTDKIIGLNIGADDYVTKPFNPLELIARVKSLI 118

Query: 117 RRLKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           RR  +  N +E        TG + +  D  +  V GE   L   E +IL+ LM+   K  
Sbjct: 119 RRYTILGNMSEKEADNILTTGGLSLNEDTTEVTVDGEEVKLTSTEFKILKLLMSRPNKVF 178

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
           +  +I+  ++G     + +N V  H+  +R+K+      DP + K       +GY I+
Sbjct: 179 SMEEIYEKVWGELS-YMTDNTVAVHVRHIREKIE----IDPKNPKYLKVVWGIGYKIE 231


>gi|170744715|ref|YP_001773370.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198989|gb|ACA20936.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 234

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R IRA  +   +P+I ++        +    +G DD + KP    E+LARV A+ R
Sbjct: 62  IELCRRIRARRETERLPVIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLR 121

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K ++  +    G I +         +G    L   E ++LE+LM + G+  ++ Q+  
Sbjct: 122 RAKPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  ++E  V+ HI +LRK +      DP+ + R  GYS D
Sbjct: 182 GVWG-HDVYIDERTVDVHIGRLRKAINRPRRPDPIRTVRGSGYSFD 226


>gi|58337917|ref|YP_194502.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227902916|ref|ZP_04020721.1| response regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58255234|gb|AAV43471.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227869332|gb|EEJ76753.1| response regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 233

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 28/213 (13%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGI 78
             LEFE +    A++   A+E F   K   +L    LP        R IR  S+VP+I +
Sbjct: 23  TELEFEGYQVIWAQDGKEALELFQKEKPTLILLDWMLPVYDGITVLRRIRKKSEVPIIML 82

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-FSDG 137
           +   S        D G+DD + KP    E+ AR+  I RRL+ SN + E   I   F   
Sbjct: 83  TAKNSTSDISSALDQGLDDYITKPFEIEELFARIRVILRRLEKSNKQKENSTISFNFGPF 142

Query: 138 RDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +   V+ E F       L  +E  ++  LM +  K  ++ ++   ++G +D   + N V+
Sbjct: 143 KIDLVKHEFFSNDEKIYLTPKEFALMTELMRDPEKVKSRDELLDVVWG-YDFVGQTNTVD 201

Query: 192 SHISKLRKKLRNKLGFDP----VDSKRFLGYSI 220
            +I    + +RNK+G DP    + + R LGY +
Sbjct: 202 VYI----RTIRNKIG-DPNKKLIQTVRGLGYCL 229


>gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055]
 gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger
           B]
 gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Vollum]
 gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Australia 94]
 gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus
           anthracis CI]
 gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 239

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----------GPIRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR K+      T            +++  +  +   Q
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVTETSDEESITIAELKILPEFYEAYFQ 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202
           G    L  +E  +L YL  N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233


>gi|331083762|ref|ZP_08332871.1| hypothetical protein HMPREF0992_01795 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403187|gb|EGG82747.1| hypothetical protein HMPREF0992_01795 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 224

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKV 121
           L  I +  + +P++ ++    +   ++  D+G +D + KP H +E+LAR+ A+ R +   
Sbjct: 63  LKEIRKKGNLIPVLLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAMTRVQTGQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  + G + +     +       F L  +E +++E +M+N G  ++  +    I+G +
Sbjct: 123 TGSILKMGNVALNRAAFELSTSKGSFRLANKEFQMIELMMSNPGVLISAERFMEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   E NVV  +IS LRKKL        +   R +GYS++
Sbjct: 182 DSEAEINVVWVYISYLRKKLAALQADIQIKVTRSVGYSLE 221


>gi|325263675|ref|ZP_08130409.1| phosphate regulon response regulator PhoB [Clostridium sp. D5]
 gi|324031384|gb|EGB92665.1| phosphate regulon response regulator PhoB [Clostridium sp. D5]
          Length = 226

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I      G+  +GF   E   ++++ A +    I   ++  GE  
Sbjct: 1   MIYCVEDDDNIRELVIYTLETTGLKAQGFA--EGGSFMEALAFDTPELILLDIMLPGEDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L L   +++ S+   +P+I ++   +    +   DSG DD V KP    E+++RV A+ R
Sbjct: 59  LSLLGKLKSSSKTKDIPVIMVTAKGAEYDKVVGLDSGADDYVTKPFGMMELVSRVKAVLR 118

Query: 118 RLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   ++++ +   G + V     +  V G+   L  +E  +LE LM N+   + + Q+  
Sbjct: 119 RTGRASDKDDMSVGGVCVNVKKHEVTVDGKTVTLTLKEFELLERLMRNQNIVLTRDQLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ H+  LR+KL  K   + +++ R +GY I
Sbjct: 179 DIWG-YDFDGETRTVDVHVRTLRQKLGVK--GEIIETVRGVGYRI 220


>gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 220

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LDVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQ 119

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++    G + +        ++G    L  RE  +LE L+A  G  ++K+Q+   +Y
Sbjct: 120 SGRSDSTIRHGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G + E +  N VE +I  LRK    KLG D + + R LGY I
Sbjct: 180 G-WGEEIGSNTVEVYIHALRK----KLGADLIRNVRGLGYMI 216


>gi|224541344|ref|ZP_03681883.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525781|gb|EEF94886.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
           15897]
          Length = 223

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 6/198 (3%)

Query: 28  GFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           GF+++E    EE L     + +      ++  G    EL   +R + + P+I ++     
Sbjct: 26  GFDTIEAANAEEALDIVENQYIDLAVVDIMMPGMDGFELVEQMRQYREFPVIMLTAKSQS 85

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQ 143
           +  L  F  G+DD V KP    E++ARV  I +R  + S+N  + G +    D  +   Q
Sbjct: 86  KDKLRGFSLGIDDYVTKPFDPDELMARVKTILKRYSINSSNVVKIGDVIFDGDKYEVRYQ 145

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +V  LP ++  +   L  N  +   + Q+   I+G+ D    +  V+ HI ++R+ L +
Sbjct: 146 EQVIHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM-DYDGFDRTVDVHIKRIRENLGH 204

Query: 204 KLGFDPVDSKRFLGYSID 221
             GF  V + R LGY I+
Sbjct: 205 LPGFKVV-TVRGLGYKIE 221


>gi|156740251|ref|YP_001430380.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231579|gb|ABU56362.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 227

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 4/134 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFP- 148
           FDSG DD + KP    E+LARV A+ RR  +  ++R E     +  D R    +    P 
Sbjct: 91  FDSGADDYLVKPFAFEELLARVRALGRRFTLQPDDRDELRVGDLVLDLRHHTARRGARPL 150

Query: 149 -LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E  +LEYLM N G+ +++ QI   ++  ++  V+  +V+ +I+ LR+KL      
Sbjct: 151 DLTPTEWNLLEYLMRNAGQALSRQQILDYVWS-YEHDVQPQMVDVYIAYLRRKLNAPGER 209

Query: 208 DPVDSKRFLGYSID 221
           DP+ + R +GY ++
Sbjct: 210 DPIVTVRGVGYRLE 223


>gi|15807237|ref|NP_295967.1| phosphate regulon transcriptional regulatory protein PhoB
           [Deinococcus radiodurans R1]
 gi|6460051|gb|AAF11793.1|AE002057_1 phosphate regulon transcriptional regulatory protein PhoB
           [Deinococcus radiodurans R1]
          Length = 238

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 12/159 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGP 130
           ++P++ ++   +    ++  ++G DD + KP    E++ARV A+ RR +         GP
Sbjct: 75  RLPVLMLTARAAEAERVEGLETGADDYLTKPFSAAELVARVRALLRRAQPETPQHLGNGP 134

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V     + ++ G    L RRE  +L +L AN G+  ++T++   ++G  D    E  V
Sbjct: 135 LTVDLAAAEAQLAGRTLNLTRREFDLLAFLTANAGRVYSRTELLDRVWGA-DFLGGERTV 193

Query: 191 ESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI-DWN 223
           + H+++LR      LG DP     +++ R  GY +  WN
Sbjct: 194 DQHVTQLRA----HLGDDPGKPSFLETVRGKGYRMRAWN 228


>gi|257093436|ref|YP_003167077.1| DNA-binding response regulator CreB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045960|gb|ACV35148.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 226

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R++R +S VP+I ++        +   + G DD V KP   RE+++RV AI RR + 
Sbjct: 61  DVCRLLRRNSDVPVIFLTARSDEVDRIVGLELGADDYVAKPFSPREVVSRVRAILRRSRP 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + N    T   R   DG    V   G    L R E  +L  L+A  G+ +++ QI   +
Sbjct: 121 ELRNGAGATASARFTVDGEGLRVAYHGVWLNLTRYEYLLLTLLLARPGRILSRGQIMENV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    E++E   V++H+  LR KLR  +   +P+ + R LGYSI
Sbjct: 181 WQDSGESLERT-VDTHVKTLRGKLRAVRADEEPILTHRGLGYSI 223


>gi|256421617|ref|YP_003122270.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256036525|gb|ACU60069.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 227

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 4/169 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++L+   + +  S V +I   +  SL   +   + G DD + KP H  E+ AR+ A
Sbjct: 57  GNGLELLQFMHLEKIDSCVLIISAKN--SLDDKISGLEGGADDYLTKPFHLPELHARLRA 114

Query: 115 IYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           I+RR K+  +N      I + +D  +  V      +  +E  +L Y + N+ + +++  I
Sbjct: 115 IFRRKKLQGSNIVSFNEITLNTDTLEASVNEIRLDVTPKEFDLLLYFLVNKNRVLSRQSI 174

Query: 174 FSAIYGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++G + D     + V  H+  LRKK+    G D +++   LGY  +
Sbjct: 175 AAHLWGDYTDNLANFDFVYQHVKNLRKKIHAAEGADYINTVYGLGYKFN 223


>gi|33597417|ref|NP_885060.1| putative two-component response regulator [Bordetella parapertussis
           12822]
 gi|33602158|ref|NP_889718.1| putative two-component response regulator [Bordetella
           bronchiseptica RB50]
 gi|33573844|emb|CAE38153.1| putative two-component response regulator [Bordetella
           parapertussis]
 gi|33576596|emb|CAE33674.1| putative two-component response regulator [Bordetella
           bronchiseptica RB50]
          Length = 223

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 57  GEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  L L R +R  +   P++ ++    L   +   D G DD + KP    E+LAR+ A+
Sbjct: 58  GQSGLALLRALREGYDTTPVLLVTARDQLSDRIRGLDGGADDYIVKPFELDELLARLRAV 117

Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            RR   S+N+       G + V    R     G    L + E R L  LM  RG+ V++ 
Sbjct: 118 LRR---SHNQVAPLMRHGELLVDPAARQVSRAGRPVALSQSEYRTLLALMQRRGRTVSRE 174

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+   +YG    A+E N V  ++ +LR+    KLG D +++    GY I
Sbjct: 175 QLEHDVYG-ASVALESNTVAVYVHQLRR----KLGDDLIETVHGYGYRI 218


>gi|87122638|ref|ZP_01078515.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
 gi|86162096|gb|EAQ63384.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
          Length = 232

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 19/169 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  ++IRA S+VP+I ++        +   + G DD ++KP + RE+LAR+ AI RR   
Sbjct: 62  ETLKLIRAKSKVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRR--A 119

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +N++ E       +G + +    R   ++GE+  L   E  +LE +++  G+ + K ++ 
Sbjct: 120 ANDKEEDLATDLVSGNLLLQRKDRSVYLEGELIELTTSEYTLLECMLSLPGQVLTKQELS 179

Query: 175 SAIYG----LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
               G    ++D +     ++ HIS LRKK+   +  +P + + R +GY
Sbjct: 180 EKALGRKLTMYDRS-----LDMHISNLRKKVGTLINGEPRIKTVRGVGY 223


>gi|219666589|ref|YP_002457024.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219536849|gb|ACL18588.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 246

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 12/162 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------L 119
           IR  SQVP++ IS        +   + G DD + KP     + A++ AI RR       +
Sbjct: 90  IRKVSQVPIMFISSAGDNMNIVMAMNMGGDDFIAKPFDLNVLTAKIQAILRRTYHFAGQV 149

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K+  +R   G +   +D      QG+   L + + RIL+ LM N+G+ V++  +   ++ 
Sbjct: 150 KILEHR---GALLNTADA-SLTYQGQHIELTKNDYRILQALMENKGRVVSRDTLMQRLWE 205

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  V+EN +  ++++LRKKL      D + +K+ LGY I+
Sbjct: 206 T-DSFVDENTLTVNMTRLRKKLEAAGLKDFIITKKGLGYLIE 246


>gi|107025799|ref|YP_623310.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116693018|ref|YP_838551.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737720|ref|YP_001778980.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895173|gb|ABF78337.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116651018|gb|ABK11658.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169819908|gb|ACA94490.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 220

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR      RA+
Sbjct: 68  RRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVNRR---HAGRAQ 124

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           T    GP+R+        +  +  PL  +E  +L  LM   G  +++ Q    +Y  + E
Sbjct: 125 TTLAIGPLRLDPVKHLVWLDDDEVPLSPKEFVLLHELMREPGAVISREQFEERLYS-WGE 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 184 EIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216


>gi|30264900|ref|NP_847277.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530386|ref|YP_021735.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187716|ref|YP_030969.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481771|ref|YP_038879.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|65322198|ref|ZP_00395157.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869737|ref|ZP_02214395.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634030|ref|ZP_02392353.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638007|ref|ZP_02396285.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685909|ref|ZP_02877132.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705536|ref|ZP_02896000.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651274|ref|ZP_02934105.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|196033172|ref|ZP_03100585.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041444|ref|ZP_03108737.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196043886|ref|ZP_03111123.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206977011|ref|ZP_03237912.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962325|ref|YP_002340897.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218906060|ref|YP_002453894.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222098310|ref|YP_002532367.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|225866835|ref|YP_002752213.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227817627|ref|YP_002817636.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917487|ref|ZP_04081036.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929881|ref|ZP_04092896.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228936145|ref|ZP_04098948.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948581|ref|ZP_04110860.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228988098|ref|ZP_04148197.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229093945|ref|ZP_04225036.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|229124398|ref|ZP_04253586.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|229141576|ref|ZP_04270108.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|229158457|ref|ZP_04286518.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|229187098|ref|ZP_04314247.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|229199005|ref|ZP_04325691.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|229604112|ref|YP_002869105.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687640|ref|ZP_05151496.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725206|ref|ZP_05186989.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736944|ref|ZP_05194650.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741979|ref|ZP_05199666.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754423|ref|ZP_05206458.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757256|ref|ZP_05209283.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259575|gb|AAP28763.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505534|gb|AAT34210.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181643|gb|AAT57019.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49333327|gb|AAT63973.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164714566|gb|EDR20085.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513824|gb|EDR89192.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530831|gb|EDR93533.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129661|gb|EDS98524.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670373|gb|EDT21113.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083100|gb|EDT68162.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|195994601|gb|EDX58556.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025222|gb|EDX63892.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196027692|gb|EDX66306.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206744816|gb|EDZ56222.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217063173|gb|ACJ77423.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218534774|gb|ACK87172.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221242368|gb|ACM15078.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|225788218|gb|ACO28435.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007195|gb|ACP16938.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228584471|gb|EEK42603.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228596407|gb|EEK54078.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228624976|gb|EEK81742.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228641856|gb|EEK98155.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|228659050|gb|EEL14702.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228689427|gb|EEL43241.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228771596|gb|EEM20063.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228811080|gb|EEM57422.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823490|gb|EEM69319.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829797|gb|EEM75419.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842159|gb|EEM87258.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268520|gb|ACQ50157.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|324328738|gb|ADY23998.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 231

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223


>gi|330875500|gb|EGH09649.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 226

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ + +R+ S VP+I I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 62  GRDGMDICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   ++  A  G ++V  +       G V  L   E R+L     + G+  ++ Q+   
Sbjct: 122 RRTSATDPLAAKG-LQVDEEHYQASFNGVVLDLTPVELRLLATFARSPGRVFSRDQLLDR 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SHI  LR+KL     G D + S   +GY ++ 
Sbjct: 181 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDQIQSLYGVGYKLEL 226


>gi|315223364|ref|ZP_07865223.1| DNA-binding response regulator [Capnocytophaga ochracea F0287]
 gi|314946695|gb|EFS98684.1| DNA-binding response regulator [Capnocytophaga ochracea F0287]
          Length = 223

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 10/154 (6%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++L+  R ++ +  V +I   D  S++  +   + G DD + KP H  E+LARV +
Sbjct: 57  GSGMQLLDELRAMKKNHSVLIISAKD--SVEDKVLGLEKGADDYLAKPFHLAELLARVKS 114

Query: 115 IYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           I RR    N + E       +++F + R  +V      L R+E  +L Y +    + V K
Sbjct: 115 IIRR---KNQQGEEVITLKNVQLFPETRTVKVGNTTLTLNRKEYDLLYYFIIRPERLVEK 171

Query: 171 TQIFSAIYGLFDEAVEE-NVVESHISKLRKKLRN 203
           T +  A++G + + V+  + + S I  LRKKL+ 
Sbjct: 172 TTLAEAVWGDYIDQVDSLDFIYSQIKNLRKKLKT 205


>gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family
           [Hydrogenobacter thermophilus TK-6]
          Length = 224

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 29/208 (13%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--- 66
           D Y+     +G++ EG++ +    W+    R+  SA+   L G    +L    LP+    
Sbjct: 9   DTYVGEMIKEGLTYEGYHVV----WV----RDGFSAMREALEGDYHLILLDIMLPKFDGM 60

Query: 67  -----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I I+    ++  ++   +G DD + KP   +E+LAR+ A+ RR K 
Sbjct: 61  KVLSRIREVKDIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVLRRYK- 119

Query: 122 SNNRAETGPIRV---FSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + E   I+V     + R  EV  +G    L  RE ++L+ L  + G+ +++ ++F+ 
Sbjct: 120 ---KEEEDIIKVGDLLINPRSYEVYYRGRSIKLTSREFKLLKVLAEHAGEVLSRERLFAK 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           ++G        NVV+ +I  LR KL ++
Sbjct: 177 VWG-SSYGENSNVVDVYIKNLRNKLEDR 203


>gi|227549745|ref|ZP_03979794.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078180|gb|EEI16143.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 230

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 9/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           IRA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR        
Sbjct: 67  IRAVSAVPIIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGPEVVDEE 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++      E G +++        V GE   +P +E  +LEYLM N G+ + + Q+   I+
Sbjct: 127 VEADERILEGGRVKMDVSRHTVFVDGEPVSMPLKEFDLLEYLMRNPGRVLTRGQLIERIW 186

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G  D   +   ++ H+ +LR K+
Sbjct: 187 G-ADYVGDTKTLDVHVKRLRTKI 208


>gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans]
 gi|133739701|emb|CAL62752.1| Transcriptional regulatory protein TctD [Herminiimonas
           arsenicoxydans]
          Length = 233

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 16/216 (7%)

Query: 8   RALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           R+L + GY+     +GV  +   ++ +F+  +       +S +E            L R+
Sbjct: 18  RSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGLEV-----------LQRL 66

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
              +S++P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR        
Sbjct: 67  RARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGAGGGPTV 126

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   +   + E V
Sbjct: 127 IKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHLCE-WSEEV 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             N +E ++ +LRKK+  ++G   + + R LGY ++
Sbjct: 186 SNNAIEVYVHRLRKKI--EIGGLRIATVRGLGYCLE 219


>gi|71734320|ref|YP_276098.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257486549|ref|ZP_05640590.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289628131|ref|ZP_06461085.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649903|ref|ZP_06481246.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488665|ref|ZP_07006694.1| DNA-binding response regulator TctD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554873|gb|AAZ34084.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298156738|gb|EFH97829.1| DNA-binding response regulator TctD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330871254|gb|EGH05963.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330889487|gb|EGH22148.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989046|gb|EGH87149.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010032|gb|EGH90088.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 223

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 79/149 (53%), Gaps = 11/149 (7%)

Query: 63  LPRI--------IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           LPR+        +RA S+ +P++ ++    ++  +   + G DD + KP    E+ ARV 
Sbjct: 54  LPRMDGFEVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVK 113

Query: 114 AIYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR  +   R +   +  +  D R   +  E+  L  RE+ +LE L+A  G+ ++K Q
Sbjct: 114 ALLRRSVLGGERQQRCGVLAYDLDTRRFTLGEELLALTSREQAVLEALIARPGRVMSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + + ++GL DE    + +E ++ +LRKKL
Sbjct: 174 LAAQVFGL-DEEASPDAIEIYVHRLRKKL 201


>gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8]
 gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8]
          Length = 225

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 17/200 (8%)

Query: 28  GFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPS 83
           GF  LE E+    L+   + D+  ++  L   G   LE+ R+IR    ++PL+ ++    
Sbjct: 24  GFEVLEAEDGEKALELFPQADLVILDLMLPKVGG--LEVARLIRQERPELPLLILTAKGE 81

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ 143
            +  +   + G DD V KP   RE++ARV A+ RR  +       GP+R+    R+  + 
Sbjct: 82  EEDRVLGLELGADDYVVKPFSPREVVARVKALLRRAGLREELV-YGPLRLLPTRREAYLA 140

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           G+  PL R E  +L  L  + G   ++ ++   ++G     V + VV+ HI+ LRK    
Sbjct: 141 GKPLPLSRLEFDLLLTLAQHPGVVFSRERLLERVWGPGFPGV-DRVVDVHIAALRK---- 195

Query: 204 KLGFDP-----VDSKRFLGY 218
           KLG DP     +++ R +GY
Sbjct: 196 KLGDDPENPRFIETVRGVGY 215


>gi|331658014|ref|ZP_08358976.1| transcriptional activator protein CopR [Escherichia coli TA206]
 gi|331056262|gb|EGI28271.1| transcriptional activator protein CopR [Escherichia coli TA206]
          Length = 260

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|320658631|gb|EFX26325.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 260

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|298247083|ref|ZP_06970888.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549742|gb|EFH83608.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 227

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 18/215 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEK 59
           +++DD     D  IA    D +  EGF  +   + E+ L +  R  V  +   ++  G  
Sbjct: 6   LIVDD-----DAAIAHLLRDFLKAEGFQVMVATDAEKALDTVQRTSVDCLVLDVMMPGRS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             +L R IR  S +P++ +S Y S +  L  F  G DD + K     E++ARV A+ RR 
Sbjct: 61  GFDLCRHIRETSNLPILFLSAYDSDKEKLRGFGLGGDDYIAKSASPSEVVARVKAVLRRC 120

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K S++    G + +     +  ++G+  P   RE  +L +   +  +   + Q+F  
Sbjct: 121 QKEKPSSSMFNFGRLVIDPVAHEVLIEGQPLPFTTREFALLCFFAEHPRQVFTREQLFER 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
            +G   E  +   V  HI ++R+K+      DP D
Sbjct: 181 FWG---EIGDRQTVTVHIRRIREKIER----DPAD 208


>gi|257790500|ref|YP_003181106.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|325829924|ref|ZP_08163382.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
 gi|257474397|gb|ACV54717.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|325488091|gb|EGC90528.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
          Length = 226

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--- 129
            P++ ++   +    L    SG DD + KP    E+LAR+ AI RR   +  R + G   
Sbjct: 72  TPVLMLTARSATADKLRGLRSGADDYLAKPFDRDELLARIEAILRR---TTGRRDVGIVA 128

Query: 130 --PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              + + +  R   +  E   L  ++  ILEYL++++G  ++K ++F  I+G   +    
Sbjct: 129 FKELALHTRTRQAFIADEPLALKGKQYDILEYLVSHQGSLISKERLFDKIWGFMSD-TSS 187

Query: 188 NVVESHISKLRKKL 201
           NVVE ++S LRK L
Sbjct: 188 NVVEVYVSALRKAL 201


>gi|167629726|ref|YP_001680225.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592466|gb|ABZ84214.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 234

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 31/227 (13%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRA 69
           +A    D +  EGF  L   +   +    DV     F++        G +VL+    IR 
Sbjct: 13  VAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSEVLQY---IRR 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127
            +  P+I ++   +    +  F  G DD + KP    E+ ARV A+ RR + +++  E  
Sbjct: 70  KTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEGTHHITENQ 129

Query: 128 --------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +  D  + +V+G V  L  +E  +L+YL     + V   QI+ +++G
Sbjct: 130 VGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIAQIYESVWG 189

Query: 180 LFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSI 220
              E + ++N V  HIS    +LRNK+  DP + +R      LGY +
Sbjct: 190 --KEFIHDDNTVMVHIS----RLRNKIEEDPANPQRLQTVRGLGYRL 230


>gi|153002710|ref|YP_001368391.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|151367328|gb|ABS10328.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
          Length = 231

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 8/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129
           P++ ++   S Q  ++  D+G DD + KP H +E++AR+ A+ RR   S  +A      G
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRR---SAGKASPLIYNG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  + +   +     E+  L   E ++ E+ M ++G+  +KT +   IY   D  ++ NV
Sbjct: 131 PFSLNTSSLEVRKGEELVNLSGSEYKLFEFFMLHQGEVKSKTVLTEHIYDQ-DFDLDSNV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E  I +LRKKL     ++ +++ R  GY +
Sbjct: 190 IEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|126663766|ref|ZP_01734762.1| two component transcriptional regulator, winged helix family
           protein [Flavobacteria bacterium BAL38]
 gi|126624349|gb|EAZ95041.1| two component transcriptional regulator, winged helix family
           protein [Flavobacteria bacterium BAL38]
          Length = 221

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 14/162 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
             RI +  + +P+I ++   ++Q T++   +G +D + KP    E+L R    +R     
Sbjct: 63  CKRIRKEKTNLPIIFLTAKDTVQETIEGLKAGANDYIKKPFSFDELLERTKIHFRTKDEV 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L + N   +    +VF D ++         L +RE  +LEYL+ N+GK   +T I   
Sbjct: 123 KVLTLGNITIDKSKFQVFVDNKE-------VSLTQREFELLEYLIKNKGKVCTRTNIIED 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ +  E  +  V++  ++ +RKKL      D + + R +GY
Sbjct: 176 VWDIHFE-YDTGVIDVFMNAIRKKLNLTKDQDLIKTIRGIGY 216


>gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
 gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
          Length = 227

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 21/158 (13%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L + R +RA     P++ ++   S++  +   D+G DD + KP    E+LARV A+ RR 
Sbjct: 60  LVVCRELRASGVSTPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALLRRK 119

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  LKV++   E  PI      R    QG    L  +E  +LEYLM N GK +++T
Sbjct: 120 SESKSPVLKVAD--LELDPI-----SRRVSRQGSSIRLTTKEYALLEYLMRNPGKVLSRT 172

Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
            I   ++ + FD   E NV++ +IS LR K+    GFD
Sbjct: 173 LIGEHVWDMNFDP--ESNVIDVYISHLRSKIDK--GFD 206


>gi|163942574|ref|YP_001647458.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229135685|ref|ZP_04264462.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|163864771|gb|ABY45830.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228647783|gb|EEL03841.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 231

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENSIETVRGLGY 223


>gi|328544519|ref|YP_004304628.1| Response regulators consisting of a chemotaxis protein CheY domain
           and a winged-helix DNA-binding domain [polymorphum
           gilvum SL003B-26A1]
 gi|326414261|gb|ADZ71324.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 227

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 14/171 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  V+E  R  +A    P++ +S    +   +    +G DD + KP    E+LAR+ A+ 
Sbjct: 59  GLSVIEALR--KAGDHTPVLILSALGQVDDRVTGLRAGGDDYLPKPFAFTELLARIEALG 116

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR K S    ET  +   +D             G+  PL  RE R+LEYLM + G+ V +
Sbjct: 117 RRPKASG---ETETVYRVADLELDRLTHRCSRAGKDIPLQPREFRLLEYLMQHAGQVVTR 173

Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           T +   ++   FD   + NV++ HIS+LR K+        + + R  GYSI
Sbjct: 174 TMLLENVWEYHFDP--QTNVIDVHISRLRAKIDKDFDRPLLHTIRGAGYSI 222


>gi|326789158|ref|YP_004306979.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326539922|gb|ADZ81781.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 237

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 7/165 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S +P+I ++    +   +   D G  D + KP    E+LAR+  ++ +LK
Sbjct: 70  MEVLRRIRQVSSLPVIMLTAKDDVMDKVMGLDLGAQDYITKPFAIEELLARIRVLF-KLK 128

Query: 121 VSNNRAETGPIRVFSDGRDP---EVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFS 175
            +   A    ++      DP   EV     P  L ++E  +L++LM N+   + + QI  
Sbjct: 129 ATTPTATPEVLKCGQLTLDPERYEVSYNNIPLALTKKEFELLQFLMLNKNLLITREQILE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D   + NVV+ +I  LR K+  +     + + R +GY I
Sbjct: 189 KVWG-YDYLGDTNVVDVYIRYLRNKIDQRFEDKLIYTVRGMGYQI 232


>gi|226356996|ref|YP_002786736.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226318986|gb|ACO46982.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 229

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 9/157 (5%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           GE  L   R +RA ++   +P++ ++   +    ++  +SG DD + KP    E++ARV 
Sbjct: 55  GESGLGFLRRLRADAELRRMPVLMLTARAAEAERVEGLESGADDYLTKPFSAAELVARVR 114

Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR +  +    T GP+ V  +  +  V G+   L RRE  +L +L  N G+  ++T+
Sbjct: 115 ALLRRSQPDSPPTLTNGPLIVDVNAAEARVSGKRLNLTRREFDLLAFLTQNTGRVYSRTE 174

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +   ++G  D    E  V+ H+++LR      LG DP
Sbjct: 175 LLDRVWG-ADFLGGERTVDQHVTQLRA----HLGDDP 206


>gi|192361100|ref|YP_001980663.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190687265|gb|ACE84943.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 221

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   L++ R  RA     P++ ++        +D   +G DD + KP H  E+  R+ A+
Sbjct: 56  GTSGLDVLRHWRAQGLHTPVLILTARDKWSERIDGLKAGADDYLTKPFHPEELQLRIQAL 115

Query: 116 YRRLKVSNNRAE-TGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR     N+ +      V  + R   + +GE   L   E  +L YLM +  + ++K+Q+
Sbjct: 116 LRRAHGFANQPQLQAAGLVLDEARQMAQYRGETVTLTAAEFSLLRYLMLHPERILSKSQL 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +Y   +   + NV+E HI+ LR+    KLG D ++++R  GY +
Sbjct: 176 YDHLYN-GEAERDSNVIEVHINHLRR----KLGKDIIETRRGQGYRL 217


>gi|168184808|ref|ZP_02619472.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237793637|ref|YP_002861189.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672118|gb|EDT84079.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261261|gb|ACQ52294.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S++P+I IS   S    +   ++G DD + KP +   I+A++ +  RR      
Sbjct: 66  RRIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   ++ + +  + E + E   + ++E  +LEYLM    K V +  +   I+
Sbjct: 126 PKVDEKIVELQGLKFYKERSEIEFRDERVIITKKEGILLEYLMKKYPKVVNRDFLLEKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
               E VEEN +  ++S++RK+L +KLG  D +++ R +GY ++
Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HKLGIEDGIETVRGVGYRLN 227


>gi|300822262|ref|ZP_07102403.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|300525145|gb|EFK46214.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|323936954|gb|EGB33235.1| heavy metal response regulator [Escherichia coli E1520]
          Length = 260

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 227

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 6/181 (3%)

Query: 26  LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           +E F +    E      RE++  +   ++   E    + + IRA S VP+I ++   + +
Sbjct: 26  IETFTAASGTEAYDVIVRENIDLVLLDVMMPHEDGFVVCQSIRAMSNVPIIFLTARDANE 85

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----GPIRVFSDGRDP 140
             +     G DD + KP  H E++AR+ A+ RR   +    +      G I++    R  
Sbjct: 86  DKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGANITELQQKYVIFGSIKIDEIARKV 145

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
            V G+  PL  +E  +L   M N G   ++ Q+   I+ + D       V++HI  LR K
Sbjct: 146 SVDGKSIPLTLKEFELLHLFMKNPGNAYSREQLLERIWDI-DYVGGTRTVDTHIKTLRIK 204

Query: 201 L 201
           L
Sbjct: 205 L 205


>gi|161986515|ref|YP_310926.2| transcriptional regulatory protein YedW [Shigella sonnei Ss046]
 gi|323168911|gb|EFZ54591.1| transcriptional activator protein irlR [Shigella sonnei 53G]
          Length = 223

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 181 FDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217


>gi|66769829|ref|YP_244591.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993044|ref|YP_001905054.1| two-component system response regulator [Xanthomonas campestris pv.
           campestris str. B100]
 gi|66575161|gb|AAY50571.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734804|emb|CAP53014.1| two-component system response regulator [Xanthomonas campestris pv.
           campestris]
          Length = 271

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 19/172 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        +   D+G +D V KP   +E++AR+ A+ R+   
Sbjct: 104 EVLREIRQWSSVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 163

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N   E+    VF DG        R+  + GE  PL R+E  +L  L  + G+ V + Q+
Sbjct: 164 GNTVEES----VFDDGRLHIHLGLREVTLDGEAVPLSRKEYALLALLFKHAGRVVTQPQL 219

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYS 219
              ++G   E  + + +   + KLR+KL +          +P    RF+G +
Sbjct: 220 LREVWGPTHEE-DTHYLRILVGKLRQKLHDDAAAPHYIVTEPGVGLRFIGVT 270


>gi|310641768|ref|YP_003946526.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphop [Paenibacillus polymyxa SC2]
 gi|309246718|gb|ADO56285.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Paenibacillus polymyxa SC2]
          Length = 224

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 96/202 (47%), Gaps = 5/202 (2%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISD 80
           + LEG   +E  + L +    D + ++  ++     G    EL R +R  + +PL+ ++ 
Sbjct: 21  LRLEGLEVVEAVDGLDAMRLFDETKVDLLVLDIMMPGMDGWELCRKLREQTDLPLLMLTA 80

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRD 139
                  +  F  G DD + KP     ++ARV A+ +R ++  +++ T G + + SD  +
Sbjct: 81  KGETSQIVKGFALGTDDYLVKPFDPMVLVARVKALLKRYRIMASKSVTIGDLVLRSDTFE 140

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
            +   +   LPR+E  +L  L +  GK   +  +   I+G +D   +E  V+ HI +LR+
Sbjct: 141 CQAGEQGITLPRKEFELLFKLASYPGKTFTRDHLIEQIWG-YDYEGDERTVDVHIKRLRE 199

Query: 200 KLRNKLGFDPVDSKRFLGYSID 221
           +         + + R LGY ++
Sbjct: 200 RFPEATQSFAIRTIRGLGYRLE 221


>gi|168752198|ref|ZP_02777220.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757600|ref|ZP_02782607.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4401]
 gi|195940656|ref|ZP_03086038.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. EC4024]
 gi|261227539|ref|ZP_05941820.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254637|ref|ZP_05947170.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283144|ref|YP_003499962.1| Heavy metal response regulator [Escherichia coli O55:H7 str.
           CB9615]
 gi|188013893|gb|EDU52015.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4113]
 gi|189355396|gb|EDU73815.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4401]
 gi|290763017|gb|ADD56978.1| Heavy metal response regulator [Escherichia coli O55:H7 str.
           CB9615]
 gi|320191940|gb|EFW66587.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. EC1212]
 gi|320641815|gb|EFX11203.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. G5101]
 gi|320668529|gb|EFX35356.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. LSU-61]
 gi|326344882|gb|EGD68629.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. 1125]
          Length = 260

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|168362851|ref|ZP_02696025.1| regulatory protein VanR [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|171903029|gb|EDT49318.1| regulatory protein VanR [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
          Length = 219

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR+    P+I ++        +D   SG DD + KP    E+LARV A  RR  +  ++ 
Sbjct: 66  IRSKVDCPIIFLTAKTMESDIVDGLLSGGDDYITKPFGVGELLARVEAHLRREQREKHSS 125

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G IR         V  E   L + E +I E L   +G+  +K QI+  I+G FD   
Sbjct: 126 LNLGNIRFDLSSNQVFVNEEEVHLTKSEYQISELLAKRKGQVFSKEQIYEMIFG-FDGIG 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + + +  H+  +R K + K+G +P+ +   +GY   WN
Sbjct: 185 DSSAISEHVKNIRAKFQ-KIGENPIATVWGIGYK--WN 219


>gi|71279007|ref|YP_269498.1| response regulator [Colwellia psychrerythraea 34H]
 gi|71144747|gb|AAZ25220.1| response regulator [Colwellia psychrerythraea 34H]
          Length = 243

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 28/185 (15%)

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L L  I    + +P+I ++   S+ + +   D G DD + KP   +E+LAR+  I RRL
Sbjct: 60  LLVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQELLARLRVIERRL 119

Query: 120 KVSNNRA--------ETGPIRVF-------SDGRDPEVQGEV--------FPLPRRERRI 156
             +++          +T   +V+       ++ ++ E +GE+            ++E  +
Sbjct: 120 GTASSSMITIDRVSLDTKSHKVYLLQCNQVNNEQNHEQEGEINAQNGASEVHFSKKEFMV 179

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           L+ LM N G+  ++ QI S +Y  + E V  N VE HI KLRK L NK     + + R +
Sbjct: 180 LKALMENAGRIQSREQIESKLYQ-WGEEVLSNAVEVHIHKLRKNLPNKF----IQNVRGV 234

Query: 217 GYSID 221
           GY I+
Sbjct: 235 GYIIN 239


>gi|52140668|ref|YP_086162.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|51974137|gb|AAU15687.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 231

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223


>gi|42784035|ref|NP_981282.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739965|gb|AAS43890.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 231

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223


>gi|323968255|gb|EGB63663.1| heavy metal response regulator [Escherichia coli M863]
 gi|323977850|gb|EGB72936.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 260

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|300772484|ref|ZP_07082354.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760787|gb|EFK57613.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 232

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 13/199 (6%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           +L++ G   L  +  V+L G   LE    +  S   D+  ++  L   G   L + R IR
Sbjct: 14  SLIRRGLSELNFNISVALNGLTGLE----MAVSGNYDLIILDVML--PGMDGLRVCRNIR 67

Query: 69  AHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----- 122
              + VP++ +S     +  +D F S  DD + KP +  E+ ARV+   R++  +     
Sbjct: 68  QQKKNVPILILSALDQPEDIVDGFKSDADDYLTKPFNMEELKARVSRFSRKIGQTSRVEE 127

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN  E   + +    +  + Q     L   E R+LE+LM N+ + V++  I  +++G+ D
Sbjct: 128 NNNLEFADLILDYSSKIAKRQDVDIALTATEFRLLEFLMKNQKRVVSRIDILESVWGM-D 186

Query: 183 EAVEENVVESHISKLRKKL 201
             +  NVV+ +I+ LR K+
Sbjct: 187 FNLSTNVVDVYINYLRNKI 205


>gi|224475794|ref|YP_002633400.1| putative response regulator protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420401|emb|CAL27215.1| putative response regulator protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 226

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 8/155 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R IR  S VP++ +S   +    +   + G DD + KP +   ++A++ A+YRR+    +
Sbjct: 64  RQIRHESNVPILFLSARDNPMDQVMSMELGADDFIQKPFYTNVLIAKLKAVYRRVYQFNL 123

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  T G I+V       E + EV  L + E  ILE L+ +R + V++ +I +A++  
Sbjct: 124 EEKRTMTWGNIQVDLAKGVLEREEEVIYLSKTEMMILEILLKHRNEIVSRDEIITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKR 214
            DEA + +N +  +I++LRKKL +  G D     R
Sbjct: 183 -DEAFISDNTLTVNINRLRKKLAD-FGLDTAIETR 215


>gi|194440153|ref|ZP_03072201.1| heavy metal response regulator [Escherichia coli 101-1]
 gi|256022375|ref|ZP_05436240.1| transcriptional regulatory protein YedW [Escherichia sp. 4_1_40B]
 gi|293415278|ref|ZP_06657921.1| two-component system [Escherichia coli B185]
 gi|194420916|gb|EDX36955.1| heavy metal response regulator [Escherichia coli 101-1]
 gi|291432926|gb|EFF05905.1| two-component system [Escherichia coli B185]
 gi|324018823|gb|EGB88042.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3]
          Length = 260

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|187935627|ref|YP_001885324.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund
           17B]
 gi|187723780|gb|ACD25001.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund
           17B]
          Length = 222

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 3/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
           IR +S +P+I ++   S    +     G DD + KP   + ++AR+ A+ RR    +SN+
Sbjct: 67  IRKYSNIPIIFVTSRDSNMDEIMSMTVGGDDFITKPYDSQILIARITAVLRRSYNNLSND 126

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E   + +     +   Q +   L + E +IL  L+ N+G  V +  + + ++   D  
Sbjct: 127 ILEYKGVSLNLGKGNVTYQNKTIDLTKNEFKILNNLLQNKGSIVTRDDLMNYLWN-DDVF 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++N +  +I++LRKKL      D ++++R LGY I
Sbjct: 186 LDDNTLTVNINRLRKKLEEINIHDFIETRRGLGYII 221


>gi|170680782|ref|YP_001743277.1| transcriptional regulatory protein YedW [Escherichia coli SMS-3-5]
 gi|194433665|ref|ZP_03065941.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|293405449|ref|ZP_06649441.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|301018162|ref|ZP_07182681.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|331673476|ref|ZP_08374244.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332278865|ref|ZP_08391278.1| transcriptional regulatory protein YedW [Shigella sp. D9]
 gi|170518500|gb|ACB16678.1| heavy metal response regulator [Escherichia coli SMS-3-5]
 gi|194418094|gb|EDX34187.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|291427657|gb|EFF00684.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|300399854|gb|EFJ83392.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|320180635|gb|EFW55563.1| Putative two-component system response regulator YedW [Shigella
           boydii ATCC 9905]
 gi|324119015|gb|EGC12904.1| heavy metal response regulator [Escherichia coli E1167]
 gi|331069674|gb|EGI41061.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332101217|gb|EGJ04563.1| transcriptional regulatory protein YedW [Shigella sp. D9]
          Length = 260

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|153955619|ref|YP_001396384.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146348477|gb|EDK35013.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 228

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R   + P+I ++     +  +   DSG DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRR---K 119

Query: 123 NNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     G ++      DP       + + F L  +E ++LE L+  +G  ++K  I   +
Sbjct: 120 SELVNEGILKYGDMKLDPLNLRLSCRKQEFKLTLKECQLLELLIKGKGIIISKNVIVEKL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++  VE N VE ++S LRKKLRN      + + R  GY I
Sbjct: 180 WG-YETDVEYNNVEVYVSFLRKKLRNIKSNVFIQTVRGAGYVI 221


>gi|310641974|ref|YP_003946732.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309246924|gb|ADO56491.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 230

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 9/144 (6%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--- 122
           +IR H+ VP+I IS   ++   +     G DD + KP   +E+ AR+ A++RR+K++   
Sbjct: 66  LIRKHTDVPIIVISTENNISERIRTLTLGADDYICKPFSMQELKARIEALFRRIKITRLQ 125

Query: 123 --NNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N   E  P   I +    R   V G++  +   E  +++   +NRG   ++  +  A+
Sbjct: 126 GRNTSPEAEPENGISLDLARRMVIVNGQMVEMTYSEFELMKLFYSNRGIVFSRYALIQAL 185

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
            G  D  + E  V+ HI+ LR+K+
Sbjct: 186 RGT-DSFINERAVDVHINHLRRKI 208


>gi|300923861|ref|ZP_07139879.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300419894|gb|EFK03205.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
          Length = 260

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|238761757|ref|ZP_04622731.1| Transcriptional regulatory protein basR/pmrA [Yersinia kristensenii
           ATCC 33638]
 gi|238699871|gb|EEP92614.1| Transcriptional regulatory protein basR/pmrA [Yersinia kristensenii
           ATCC 33638]
          Length = 219

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 80/155 (51%), Gaps = 6/155 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR +  S+N  
Sbjct: 68  REHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQGQSDNLV 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +   + +    +   +QG+   +  +E  IL  L+   G+ V +  +   +Y   D+ + 
Sbjct: 128 QQDDLSLNLSTQQVCLQGQPLEVTPKEFAILSRLIMRAGQTVNRELLQQDLYTWNDD-LG 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            N +E HI  LR+    KLG D + + R +GY ++
Sbjct: 187 SNTLEVHIHNLRR----KLGKDRIRTVRGIGYRLE 217


>gi|228999620|ref|ZP_04159197.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|229007167|ref|ZP_04164786.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228754082|gb|EEM03508.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228760146|gb|EEM09115.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
          Length = 231

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +   +  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKHPRTANREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223


>gi|229072342|ref|ZP_04205546.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228710767|gb|EEL62738.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 231

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENSIETVRGLGY 223


>gi|257790923|ref|YP_003181529.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474820|gb|ACV55140.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 220

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G    EL R IR     P++ ++   S    +     G DD + KP    E+ ARVAA  
Sbjct: 56  GTDGFELCRAIRGSVDAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRARVAAHL 115

Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR +     A + G +R+    R+  V     PL + E  + E+L  + G+  ++ QI  
Sbjct: 116 RRERRERKHALSFGALRLDLASREAYVGEATVPLTKTEFDVCEFLARHPGQAFSRDQIVE 175

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + G +D     + +  H++  R KL+   G +P+D+   +GY
Sbjct: 176 NVLG-WDAESAASTISVHVANARAKLKAA-GAEPIDTVWGVGY 216


>gi|53804200|ref|YP_114203.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757961|gb|AAU92252.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 224

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 108/222 (48%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   + DG      +DG  L    +  + +    +   D+  ++  L    G++V
Sbjct: 3   ILLVEDDETLADGLSRSLAEDGFDLTVAATGTYADSALRTQDYDLVILDLGLPDIDGKEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R+ +  S VP++ ++    L   +   + G DD + KP   RE+ ARV A+ RR  
Sbjct: 63  LRQLRVRK--SPVPVLILTARDGLDDRIGGLELGADDYMTKPFELRELEARVRALIRRSH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ + +  R   V GE   LP RE  +LE L+   G+ V+K +I   +  
Sbjct: 121 GGFGHDIVCGPLVLNTFDRQVHVNGEPMLLPSREYGVLEALLLQAGRVVSKDRIALRLAS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             DE + +N +E ++ +LR++L + LG   + + R LGY ++
Sbjct: 181 GGDE-LADNAIEVYVHRLRRRL-DDLGI-RIRTVRGLGYLLE 219


>gi|47568009|ref|ZP_00238715.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|229099317|ref|ZP_04230248.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|229105475|ref|ZP_04236117.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|229118328|ref|ZP_04247684.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|301056347|ref|YP_003794558.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|47555312|gb|EAL13657.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|228665158|gb|EEL20644.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228677942|gb|EEL32177.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228684135|gb|EEL38082.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|300378516|gb|ADK07420.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 231

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223


>gi|309795924|ref|ZP_07690337.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|308120374|gb|EFO57636.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|320198658|gb|EFW73258.1| Putative two-component system response regulator YedW [Escherichia
           coli EC4100B]
          Length = 260

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 232

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 21/199 (10%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67
           L K+GY  +   DG  ++  FN+L          + D+  ++  L G  G +V    R I
Sbjct: 23  LEKEGYSVILSHDGEEAVVKFNAL----------KPDIVLLDVMLPGLDGWQVC---REI 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S +P++ I+        +   + G DD + KP   +E++AR+ A+ RR   S    E
Sbjct: 70  RKKSNIPILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRRTGQSPAEME 129

Query: 128 TGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              +R     V     + +V G+V   P +E  +L YL +N  +   + Q+   ++G F+
Sbjct: 130 VREVRYDKLSVNMTRYELKVDGKVVDAPPKELELLFYLASNPNRVYTRDQLLDEVWG-FE 188

Query: 183 EAVEENVVESHISKLRKKL 201
              +   ++ HI +LR+KL
Sbjct: 189 YYGDSRTIDVHIKRLREKL 207


>gi|226227419|ref|YP_002761525.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090610|dbj|BAH39055.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 222

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 87/167 (52%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   L++ R +R+   + P++ ++   ++   ++   +G DD V KP    E+LAR  A+
Sbjct: 56  GRNGLDVLRTLRSSGFERPVLVLTAQDAVDAKVETLRAGADDYVTKPFAFEELLARAEAL 115

Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR + +++ +   G + +    R+    GE+  L  +E  +LEYLM + G+ +++T I 
Sbjct: 116 LRRPRALASPQLRVGDLELDQGTREVLRAGELIELTPKEFAVLEYLMRHAGRVMSRTLIT 175

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +G  FD     N+V+  I+ LRKK+  +     + + R +GY I
Sbjct: 176 EYAWGYHFDPGT--NIVDVVINHLRKKIDARFDKKLITTVRGVGYMI 220


>gi|218695574|ref|YP_002403241.1| transcriptional regulatory protein YedW [Escherichia coli 55989]
 gi|218352306|emb|CAU98068.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli 55989]
 gi|315617851|gb|EFU98449.1| transcriptional activator protein irlR [Escherichia coli 3431]
          Length = 223

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 42  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 102 FSFSELLARVRAQLRQHHTLNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 161

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217


>gi|189466516|ref|ZP_03015301.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM
           17393]
 gi|189434780|gb|EDV03765.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM
           17393]
          Length = 229

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  L +  +  +QVP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ 
Sbjct: 61  GFKMASLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120

Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR        E  P ++           +   + GE  PL ++E  IL  L+ ++G+  +
Sbjct: 121 RR--TQQGEQERAPEQISYKTLVIDIVKKKVSIDGEEAPLTKKEFEILLLLLQSKGRVFS 178

Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           +  I + I+   DE  V +  ++ +I++LRKK+
Sbjct: 179 REDILARIWS--DEVYVLDRTIDVNITRLRKKI 209


>gi|146341626|ref|YP_001206674.1| putative two-component response regulator (QseB/CopT-like)
           [Bradyrhizobium sp. ORS278]
 gi|146194432|emb|CAL78457.1| putative two-component response regulator (QseB/CopT-like)
           [Bradyrhizobium sp. ORS278]
          Length = 224

 Score = 61.6 bits (148), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 2/149 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI 131
           +P+I ++    LQ  +    SG DD + KP    E++AR+ AI RR      R+ E G +
Sbjct: 73  LPVIVLTARGGLQDRVGGLRSGADDYLVKPFALEELVARLQAILRRPGQLLGRSLELGNL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              ++ R   V G    L  RE  +LE L+  +G+ V K  +   I+GL  E V  N VE
Sbjct: 133 VYDTESRQTFVGGAPRTLSARELSVLEILLRRQGRVVPKKAVEDHIFGLTGE-VGSNAVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++S+LRK+L        + + R +GY +
Sbjct: 192 VYVSRLRKQLAEYGATVVIHTIRGVGYMM 220


>gi|323183609|gb|EFZ69006.1| transcriptional regulatory protein qseB [Escherichia coli 1357]
          Length = 219

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + G+   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|187927570|ref|YP_001898057.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|187724460|gb|ACD25625.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 236

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+    + +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR    
Sbjct: 66  LKRLRSRGAMLPVLILTAADSVEERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGG 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP+     GR   +  +V  L  RE  +LE L+A  G+ V+K Q+   + G +
Sbjct: 126 GATLVRHGPLAFDQVGRIAYIHDQVVELSAREIGLLEILLARVGRLVSKEQLVDHLCG-W 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E V  N +E +I +LRKK+  + G   + + R LGY ++
Sbjct: 185 GEEVSNNAIEVYIHRLRKKIEVE-GI-RIATVRGLGYCLE 222


>gi|152994266|ref|YP_001339101.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835190|gb|ABR69166.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 221

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 23/228 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +LI+D   + +       DDG +++   SL F E    +   D+  ++  L  G G   L
Sbjct: 4   LLIEDTTGLGEAVRDQICDDGHAVDWVQSLNFAEASVQATSYDLVLLDLMLPDGNGFDFL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +  R  ++ +  P+I ++    +   ++  ++G DD + KP    E+ ARV A+ RR   
Sbjct: 64  KSLR--KSGNSTPVIILTARDQVSDRIEGLNAGADDYLIKPFDLSELSARVGAVARRYRG 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +K+ +   + G  R+ ++G   E       L  RE  + E L+   G  ++++Q+
Sbjct: 122 DPNPLVKLGHLEIDLGEHRIKANGLPVE-------LTAREWALFEGLVQRPGTLLSRSQL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +Y  F   +E N +E +IS+LRK    KLG D + + R +GY ++
Sbjct: 175 EDRLYQ-FGAEIESNTIEVYISRLRK----KLGRDVIITVRNMGYRLE 217


>gi|30022904|ref|NP_834535.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|206969682|ref|ZP_03230636.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218231548|ref|YP_002369645.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218900007|ref|YP_002448418.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903354|ref|ZP_04067485.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228910691|ref|ZP_04074502.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228923592|ref|ZP_04086872.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228942018|ref|ZP_04104561.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228955112|ref|ZP_04117127.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228961108|ref|ZP_04122734.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228967956|ref|ZP_04128966.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228974949|ref|ZP_04135510.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981542|ref|ZP_04141839.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|229048543|ref|ZP_04194104.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229112300|ref|ZP_04241839.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229130118|ref|ZP_04259079.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|229147408|ref|ZP_04275757.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229153043|ref|ZP_04281224.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|229181156|ref|ZP_04308488.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229193119|ref|ZP_04320074.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|296505302|ref|YP_003667002.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29898463|gb|AAP11736.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|206735370|gb|EDZ52538.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218159505|gb|ACK59497.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218545331|gb|ACK97725.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228590383|gb|EEK48247.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228602347|gb|EEK59836.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228630463|gb|EEK87111.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228636090|gb|EEK92571.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228653333|gb|EEL09210.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228671140|gb|EEL26445.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228722807|gb|EEL74191.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228778221|gb|EEM26491.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228784802|gb|EEM32820.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228791737|gb|EEM39329.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228798551|gb|EEM45538.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228804622|gb|EEM51226.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228817687|gb|EEM63769.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228836061|gb|EEM81422.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228848959|gb|EEM93802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228856315|gb|EEN00844.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|296326354|gb|ADH09282.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|326942620|gb|AEA18516.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 231

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENSIETVRGLGY 223


>gi|325264921|ref|ZP_08131649.1| DNA-binding response regulator DltR [Clostridium sp. D5]
 gi|324029910|gb|EGB91197.1| DNA-binding response regulator DltR [Clostridium sp. D5]
          Length = 227

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 4/164 (2%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + R IR  H  VP+I  +   ++   +D  D G DD + KP    E++AR+ A+ RR 
Sbjct: 60  LSILRSIRQNHINVPVILTTALDTVNDRIDGLDCGADDYLVKPYAIEELMARIRALSRRP 119

Query: 120 KVSNNRAETGPIRVF--SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            V     +   + +    D R  + + +   L  RE  ++EY + N  K +A+ QIF  +
Sbjct: 120 GVLLEHQDLTFLDLCFTPDSRTLKCKDKEVQLSGREALLMEYFLRNPEKVLAREQIFVRV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D +VE+  ++++I  LRK L+       + +   LGY ++
Sbjct: 180 WG-TDASVEDGNLDTYIYFLRKHLKTLHSQSVITTVHGLGYRLE 222


>gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 230

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 3/132 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFP 148
            ++G DD V KP    EI+AR+ AI RR   ++  +   TG + +  D  D  V      
Sbjct: 94  LNAGGDDYVTKPFSLDEIVARIQAILRRTMQADEESIIRTGELTMDQDTHDVSVGDVSID 153

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L   E ++L YLM N  + ++K QI   ++  +D   +  +VES+IS LR+K+       
Sbjct: 154 LSPTEFKLLRYLMLNPNRVLSKAQILDHVWE-YDFNGDAGIVESYISYLRRKIDPHSSEP 212

Query: 209 PVDSKRFLGYSI 220
            + +KR  GY +
Sbjct: 213 LIQTKRGFGYML 224


>gi|110680145|ref|YP_683152.1| DNA-binding response regulator, putative [Roseobacter denitrificans
           OCh 114]
 gi|109456261|gb|ABG32466.1| DNA-binding response regulator, putative [Roseobacter denitrificans
           OCh 114]
          Length = 221

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
           F+L++D   +    +A    DG  ++    +E           D+  ++  L  G G   
Sbjct: 3   FLLVEDNIELAQAVLARLRLDGHVIDHAEKIEDAMAYAQVGDYDLILLDIMLPDGDGRDF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R  ++    P+I ++    +   +   D G DD V KP  H E+ AR  A+ RR  
Sbjct: 63  LQQHR--QSQKDTPVIVLTARSQVSDRITLLDLGADDYVTKPFDHAELEARCRAVLRRRA 120

Query: 121 VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S          +F   R    V G+   L  RE R+LE  +   G+  +K ++   ++ 
Sbjct: 121 GSAQTVTQLRDVIFDPVRGSLSVAGQSVKLRNRELRLLELFINAPGQLFSKQKLVDRLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +DE V +N +E ++ +LRK L  ++L    + + R LGYS++
Sbjct: 181 -YDEDVSDNAIEVYVGRLRKHLEPSQL---RIKTSRGLGYSLE 219


>gi|157803257|ref|YP_001491806.1| preprotein translocase subunit SecB [Rickettsia canadensis str.
           McKiel]
 gi|157784520|gb|ABV73021.1| preprotein translocase subunit SecB [Rickettsia canadensis str.
           McKiel]
          Length = 237

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 7/162 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           L R+  A  + P++ +S        +  F  G DD + KP    E++AR+ AI RR K  
Sbjct: 63  LLRLRAAKIKTPILILSSLTDTDQKITGFSFGADDYLTKPFVREELIARIKAIVRRSKGH 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S  R +   + V  D R  EV+G+   L  +E  +LE L+  RG  + K    + +Y 
Sbjct: 123 VASVFRFD--KVSVNLDTRSVEVEGKKVHLTNKEYAVLELLILRRGTILTKEMFLNHLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             DE   + +++  I KLRKKL +  G  D +D+    GY +
Sbjct: 181 SVDEPAIK-IIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221


>gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 222

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 84/160 (52%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L ++ + ++  P+I ++   +++  +   DSG DD + KP    E+L+R  A+ RR  ++
Sbjct: 63  LKKLRKQNNTTPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRRKYEI 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-L 180
           S+   +   + + +  +  +   +   L  +E  +LEYL AN+ K +++T I   IY   
Sbjct: 123 SSPIIKVDNLEIDTAKKTVKRANQPIELSAKEYALLEYLAANKNKVLSRTMIIEHIYNEE 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + NV++  I+++R K+        V + R +GY++
Sbjct: 183 FD--FDSNVIDVFINRIRNKIDKNFDKKLVHTIRGMGYAL 220


>gi|225352746|ref|ZP_03743769.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156353|gb|EEG69922.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 243

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +     P++ ++     Q  +     G DD V KP    E++AR+ AI RR   +  
Sbjct: 71  RIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQE 127

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + E  PI       +  D  D    G+   L   E ++L YLM N G+ ++K QI   ++
Sbjct: 128 QVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRN---------KLGFDP-VDSKRFLGYSI 220
             +D   +  +VES+IS LRKK+           K    P +++KR +GY I
Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGLTVEDENGEKHKVAPLIETKRGIGYMI 238


>gi|157155786|ref|YP_001463269.1| transcriptional regulatory protein YedW [Escherichia coli E24377A]
 gi|157161437|ref|YP_001458755.1| transcriptional regulatory protein YedW [Escherichia coli HS]
 gi|170019701|ref|YP_001724655.1| transcriptional regulatory protein YedW [Escherichia coli ATCC
           8739]
 gi|191169243|ref|ZP_03030996.1| heavy metal response regulator [Escherichia coli B7A]
 gi|194430371|ref|ZP_03062859.1| heavy metal response regulator [Escherichia coli B171]
 gi|297516682|ref|ZP_06935068.1| transcriptional regulatory protein YedW [Escherichia coli OP50]
 gi|300920190|ref|ZP_07136638.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300951603|ref|ZP_07165432.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300956508|ref|ZP_07168794.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|301327760|ref|ZP_07220962.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301644571|ref|ZP_07244563.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|307312448|ref|ZP_07592082.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|331668658|ref|ZP_08369506.1| transcriptional activator protein CopR [Escherichia coli TA271]
 gi|157067117|gb|ABV06372.1| heavy metal response regulator [Escherichia coli HS]
 gi|157077816|gb|ABV17524.1| heavy metal response regulator [Escherichia coli E24377A]
 gi|169754629|gb|ACA77328.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
 gi|190900721|gb|EDV60517.1| heavy metal response regulator [Escherichia coli B7A]
 gi|194411591|gb|EDX27925.1| heavy metal response regulator [Escherichia coli B171]
 gi|300316692|gb|EFJ66476.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|300412786|gb|EFJ96096.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300449146|gb|EFK12766.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300845693|gb|EFK73453.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301077107|gb|EFK91913.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|306907619|gb|EFN38122.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|315061264|gb|ADT75591.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli W]
 gi|320174282|gb|EFW49439.1| putative two-component system response regulator YedW [Shigella
           dysenteriae CDC 74-1112]
 gi|320185520|gb|EFW60287.1| Putative two-component system response regulator YedW [Shigella
           flexneri CDC 796-83]
 gi|323378157|gb|ADX50425.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli KO11]
 gi|323940374|gb|EGB36565.1| heavy metal response regulator [Escherichia coli E482]
 gi|331063852|gb|EGI35763.1| transcriptional activator protein CopR [Escherichia coli TA271]
          Length = 260

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|325687850|gb|EGD29870.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
          Length = 218

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 7/160 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  SQ+P++ ++      T L  F+  + D V KP     ++ R+  I RR  
Sbjct: 61  LEVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++  A  G + V  D      Q E  PL ++E  IL+ L   +G  V + Q+ + I+G 
Sbjct: 121 VASEIA-VGDLTVSIDDCTVYWQSEKMPLTKKEYEILQALAKRKGHLVTRDQLMNTIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  ++  V+++HI  +RKK+       P+ +   +GY +
Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGV----PLKTITGMGYQL 213


>gi|310827211|ref|YP_003959568.1| two-component response regulator [Eubacterium limosum KIST612]
 gi|308738945|gb|ADO36605.1| two-component response regulator [Eubacterium limosum KIST612]
          Length = 234

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           IR  ++VP++ ++        +  F  G DD ++KP  + E+++RV ++ RR  V     
Sbjct: 71  IREKTRVPILFLTAKDQDSDKVMGFSVGGDDYLSKPFSYTELVSRVKSLLRRYYVYQGSA 130

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +N+     + +  D ++ E+ GE+  L   E RILE +M NR K  +   I+ +I+
Sbjct: 131 PAEKSNKLVIRDLVLDKDAQNVEIGGEIVTLTDIEYRILELMMDNRKKVFSAQNIYESIW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
                    N V  HI  LRKKL++
Sbjct: 191 NEPYFYSANNTVMVHIRNLRKKLKD 215


>gi|187732444|ref|YP_001879602.1| transcriptional regulator YedW [Shigella boydii CDC 3083-94]
 gi|187429436|gb|ACD08710.1| heavy metal response regulator [Shigella boydii CDC 3083-94]
          Length = 260

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|148265316|ref|YP_001232022.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146398816|gb|ABQ27449.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 15/188 (7%)

Query: 22  DGVSLEGFNSLEFEEWLQSSA-------REDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           D +   GF+S    EWL           R     I   L+  G + L++ + IR+ S VP
Sbjct: 20  DYLKQSGFDS----EWLADGQAVVPWVKRHGPDLILLDLMLPGRRGLDICKEIRSFSDVP 75

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134
           +I I+        L   + G DD + KP   RE++ARV ++ RR       +  G I + 
Sbjct: 76  IIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKSLLRRTGGRLTASVQGLI-LD 134

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE-AVEENVVESH 193
           +      + G V  L   E ++L +L +N G+  +++Q+   IY   DE  V +  ++SH
Sbjct: 135 TSRYQATLHGHVLDLTVVEFKLLHFLFSNPGQIYSRSQLMHRIYP--DERIVSDRTIDSH 192

Query: 194 ISKLRKKL 201
           + KLRKK+
Sbjct: 193 VKKLRKKI 200


>gi|283787153|ref|YP_003367018.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
 gi|282950607|emb|CBG90278.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
          Length = 219

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D AL+ DG        G  ++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDALIGDGIKTGLSKMGFCVDWFTDGRQGKEALHSAPYDAVILDLSLPGMDGRDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R      + P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LRDWR--EQGKREPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALMRRAS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +    R   + G    L  +E  +LE LM N+G+ + +  I   +Y 
Sbjct: 121 GQASSELCHGQVTLNPGNRVAALNGSALALKPKEFALLELLMRNKGRVLPRKLIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 181 -WDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|209543371|ref|YP_002275600.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531048|gb|ACI50985.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 244

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R  R   + P++ +S     Q  +  F +G DD + KP    E+ AR+ A+ 
Sbjct: 59  GYEVLRATRAAR--RETPIVALSSLGGPQAKVRAFSAGADDYITKPYDAPELAARIQAVV 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K         GP+R+  D R+  V G    L  +E  +LE L+  +G  + K     
Sbjct: 117 RRSKGYCQPILHAGPLRLSLDSREVTVNGRPVHLTGKEYLVLELLLLRKGTVLTKYAFLD 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            +YG  DE  E  +++  I K+RKKL+ 
Sbjct: 177 HLYGGMDEP-EMKIIDVFICKVRKKLQQ 203


>gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
           R+ +  ++VP+I ++    +   +   D+G DD + KP    E+LARV A  RR   +N 
Sbjct: 67  RLRQTGNKVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANLRRTSENNA 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  +   +R+    R+      +  L  +E  +LEYLM++  + + + QI   ++G +D 
Sbjct: 127 DEVQFMDLRLNRSSREVYRANRLIELTAKEFDLLEYLMSHPRQVLTREQILERVWG-YDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + N++E ++  LR KL N      + + R +GY +
Sbjct: 186 MGDSNIIEVYVRYLRLKLENNQEKRLIQTVRGIGYVL 222


>gi|119944067|ref|YP_941747.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
 gi|119862671|gb|ABM02148.1| two component transcriptional regulator, winged helix family
           [Psychromonas ingrahamii 37]
          Length = 230

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 8/178 (4%)

Query: 47  SAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106
           +AI    + K + +  + R+   +   P++ ++   S Q  ++  D+G DD + KP +  
Sbjct: 47  AAIIDLGLPKIDGITVITRLREKNRNFPILILTARDSWQDKVEGLDAGADDYLCKPFYPE 106

Query: 107 EILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
           E++AR+ A+ RR   S  +A      GP  + +   + + + E   L   E +I EY M 
Sbjct: 107 ELVARLNALIRR---SAGKASPVINNGPFSINTSSLEVKKEHEFISLSASEYKIFEYFML 163

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G+  +KT +   IY   D  ++ NV+E  I +LRKKL     +  +++ R  GY +
Sbjct: 164 HPGEVKSKTVLTEHIYDQ-DFDLDSNVIEVFIRRLRKKLDPDNEYGLIETLRGQGYRL 220


>gi|89896373|ref|YP_519860.1| hypothetical protein DSY3627 [Desulfitobacterium hafniense Y51]
 gi|219667799|ref|YP_002458234.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335821|dbj|BAE85416.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538059|gb|ACL19798.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 3/144 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR +S +P+I ++       +L  ++ G DD + KP   R ++A+V     +    
Sbjct: 67  VCRRIRRNSGIPIIILTARSDEDDSLLGYELGADDYLIKPYSPRVLMAKVKRFLEKTSDT 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V   +   G I +    R   V+G+   L   E  IL YLM N+G  + + Q+ + ++G 
Sbjct: 127 VEEMQISAGGILLNLGSRCVSVEGDPINLTHTEFEILAYLMQNKGLVITREQLITKLWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D   +E  V SHI  LR KL +K
Sbjct: 186 YDFYGDEKTVNSHIRNLRSKLGSK 209


>gi|251796137|ref|YP_003010868.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543763|gb|ACT00782.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 224

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 100/204 (49%), Gaps = 9/204 (4%)

Query: 24  VSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78
           + +EGF  LE  + +++     SA+ D+  ++  +        EL   IR H  +P + +
Sbjct: 21  LKVEGFEVLEASDGVEALTILDSAKADLVIMDVMM--PNMDGWELCAEIRDHYDLPRLML 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDG 137
           +        L  F+ G DD + KP    E++ARV A+ +R ++++++  + G + +    
Sbjct: 79  TAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALLKRYRIASSQTVQAGDLILDRKT 138

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
              +V G+   LP +E  +L  L +  G+  ++ Q+   I+G +D    E  ++ HI++L
Sbjct: 139 YVVQVNGQSMTLPLKEFELLFKLASYPGQSFSRGQLIEEIWG-YDFEGNERTLDVHINRL 197

Query: 198 RKKLRNKLGFDPVDSKRFLGYSID 221
           R++         + + R LGY ++
Sbjct: 198 RERFPESQHTFRISTIRGLGYRLE 221


>gi|312797149|ref|YP_004030071.1| transcriptional regulatory protein qseB [Burkholderia rhizoxinica
           HKI 454]
 gi|312168924|emb|CBW75927.1| Transcriptional regulatory protein qseB [Burkholderia rhizoxinica
           HKI 454]
          Length = 333

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 31/232 (13%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA----IEAFLIGKG 57
            +L++D +++ +G       DG +++         W+Q  A   ++A     +  L+  G
Sbjct: 117 VLLVEDDSMIAEGVRKALRADGWAVD---------WVQDGAAAILAADGEPYDLMLLDLG 167

Query: 58  ---EKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ + +RA   V P++ ++   ++   +   D+G DD + KP    E+ AR+ 
Sbjct: 168 LPQRDGLDVLKTVRAKKHVFPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMR 227

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP---EVQGEVFP--LPRRERRILEYLMANRGKRV 168
           A+ RR      RAET  IR      DP   EV  E  P  L  RE  +LE L+A  G  +
Sbjct: 228 ALVRR---QAGRAET-VIRHRGLTLDPAAREVTLEGVPVALSAREYGLLEALLARPGAVL 283

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +K+Q+   IYG + E +  N VE +I  LRK    KLG + + + R LGY +
Sbjct: 284 SKSQLEEKIYG-WGEEIGSNTVEVYIHSLRK----KLGAELIRTVRGLGYMM 330


>gi|291540403|emb|CBL13514.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 17/169 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I +S        +   + G DD V KP +  E++ARV +  RR     N A
Sbjct: 71  IREESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQLGNAA 130

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E        G + +  D ++  V GEV  L   E  IL  L+ N+GK  +  QI+ +I+ 
Sbjct: 131 ENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYESIWN 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223
             D    +N V  HI  +R+K+      +P + +       +GY ID N
Sbjct: 191 -EDAIGADNTVAVHIRHIREKIE----INPKEPRYLKVVWGVGYKIDKN 234


>gi|289674703|ref|ZP_06495593.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
 gi|330898490|gb|EGH29909.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330937668|gb|EGH41572.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330950073|gb|EGH50333.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
 gi|330981459|gb|EGH79562.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 223

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 75/137 (54%), Gaps = 3/137 (2%)

Query: 67  IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +RA S+ +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  +   R
Sbjct: 66  LRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGER 125

Query: 126 AETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            +   +  +  D R   +  E+  L  RE+ +LE L+A  G+ ++K Q+ + ++GL DE 
Sbjct: 126 QQRCGVLAYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFGL-DEE 184

Query: 185 VEENVVESHISKLRKKL 201
              + +E ++ +LRKKL
Sbjct: 185 ASPDAIEIYVHRLRKKL 201


>gi|295402032|ref|ZP_06811993.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110946|ref|YP_003989262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975923|gb|EFG51540.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216047|gb|ADP74651.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 223

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP+I ++        +   + G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  ETCKRIREFSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLRRSVG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             ++ E   +    D      Q E   L  +E  IL   + +  +  ++ QI  +++G +
Sbjct: 122 KRSKIEFQGLVWDEDEHKTHYQNEPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           +   EE  ++SH+  +R+KLR ++GF P+D 
Sbjct: 181 NANTEERTIDSHVKNIREKLR-QVGF-PIDQ 209


>gi|218554547|ref|YP_002387460.1| transcriptional regulatory protein YedW [Escherichia coli IAI1]
 gi|218361315|emb|CAQ98899.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli IAI1]
          Length = 223

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 42  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 102 FSFSELLARVRAQLRQHHALNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 161

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217


>gi|254391205|ref|ZP_05006411.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813637|ref|ZP_06772280.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704898|gb|EDY50710.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326236|gb|EFG07879.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 279

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           L R+ R   +VP++ ++   +++  +    +G DD V KP    E++AR+  + RR    
Sbjct: 115 LARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAA 174

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  R E+    G + +  D R+    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 175 SAARGESLLAVGDLTLDEDSREVSRGGQAIHLTATEFELLRYLMRNPRRVLSKAQILDRV 234

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +  +D   + NVVE ++S LRKK+    G  P + ++R  GY I
Sbjct: 235 WS-YDFGGQANVVELYVSYLRKKI--DAGRAPMIHTRRGAGYLI 275


>gi|152981344|ref|YP_001351979.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281421|gb|ABR89831.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 246

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 14/219 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY A    DG+  EG       EW       DV  ++  L    + +  L  + 
Sbjct: 19  KGLKEIGYEATVCADGI--EGMELAVGGEW-------DVIILDRMLPQGMDGLSILAALR 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
               + P++ +S   ++   +    +G +D + KP    E+ ARV A+ R  + +    E
Sbjct: 70  EMGKRTPVLILSALSAIDERVRGLQAGCNDYLTKPFAFPELAARVEALLRWTQPNEVIRE 129

Query: 128 TG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
                ++V    R  E  G    L  RE R+L Y+M ++G+ + +T +  +++   FD  
Sbjct: 130 LCVEDLKVNLLTRSVERGGRPLSLQPREFRLLVYMMTHKGQVLTRTMLLESVWNYQFDP- 188

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + NV+++HIS+LR K+        + ++R LGY +  N
Sbjct: 189 -QTNVIDAHISRLRNKVDKGFAVPLIHTRRNLGYILTPN 226


>gi|110613524|gb|ABG78576.1| membrane sensor protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A]
          Length = 205

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   +++      P 
Sbjct: 60  LPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPF 119

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V    R+  V  +V  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 120 QVDLSRRELSVNEQVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 178

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + +LRKK++ +   D + + R  GY
Sbjct: 179 VLMGRLRKKIQAQYPHDVITTVRGQGY 205


>gi|331677849|ref|ZP_08378524.1| transcriptional activator protein CopR [Escherichia coli H591]
 gi|331074309|gb|EGI45629.1| transcriptional activator protein CopR [Escherichia coli H591]
          Length = 260

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|327399045|ref|YP_004339914.1| winged helix family two component transcriptional regulator [Hippea
           maritima DSM 10411]
 gi|327181674|gb|AEA33855.1| two component transcriptional regulator, winged helix family
           [Hippea maritima DSM 10411]
          Length = 223

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           +GE  +EL         +P++ I+            + G DD + KP   + +LA+V AI
Sbjct: 60  QGEDFIELVSSKEKLKDIPILIITAKTQDDLFAQLLNKGADDFLVKPFSTKVLLAKVNAI 119

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            RRLK   +      I +  D     V  E   L + E  IL+  + N  K  ++ +I  
Sbjct: 120 LRRLKNRTSVISVCGIELNEDEYSILVNSEPIELTKTEFSILKLFLENPNKVFSRDRILE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +++G ++  V +  ++ H+S LRKKL+ K
Sbjct: 180 SVWG-YNANVSDRTIDVHLSNLRKKLKEK 207


>gi|300818609|ref|ZP_07098817.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300528781|gb|EFK49843.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
          Length = 260

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|295096184|emb|CBK85274.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 225

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E  L L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ 
Sbjct: 59  EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALL 118

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +  
Sbjct: 119 RRNSGLASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y    E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 179 QLYP-DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 220


>gi|291525728|emb|CBK91315.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
          Length = 223

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 6/130 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPR 151
           G +D + KP   RE++ARV  ++ R K  ++ +    G I    D ++    G+V  L  
Sbjct: 93  GAEDYITKPFSVRELVARVNRVFLRRKNDDSSSVIHAGSISYDLDKKEARRDGQVISLSS 152

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
            E RIL+ L  N  K V++  +   I+    EA   +V +  ++   K++R KLG D + 
Sbjct: 153 LENRILDLLFTNHDKAVSRNAVIDCIW----EATGNDVYDHTVTVYMKRIRVKLGEDVIK 208

Query: 212 SKRFLGYSID 221
           + + +GY +D
Sbjct: 209 TVKGIGYRVD 218


>gi|270293867|ref|ZP_06200069.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275334|gb|EFA21194.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 229

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  + +  +  +Q+P+I I+   +   T+  F+ G DD ++KP   RE+ ARV A+ 
Sbjct: 61  GFKMASMLKKDKKTAQIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVL 120

Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR +      E  P ++           +   + GE  PL ++E  IL  L+ N+G+  +
Sbjct: 121 RRTR--QGETEHAPEQIVYKTLVLDIIKKKVCIDGEEAPLTKKEFEILLLLLQNKGRVFS 178

Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           +  I + I+   DE  V +  ++ +I++LRKK+
Sbjct: 179 REDILNRIWS--DEVYVLDRTIDVNITRLRKKI 209


>gi|225574599|ref|ZP_03783209.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038213|gb|EEG48459.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM
           10507]
          Length = 225

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 106/228 (46%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           ++V+ DD+ + +    AL  + G  ++GF   +         + D++ ++  L    E  
Sbjct: 4   IYVVEDDKNIREIESFAL-KNAGYEIQGFVCAKDFYTAMLRQKPDLALLDVML--PDEDG 60

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +R+      +P++ ++   +    +   D G DD + KP    E+++RV A+ R
Sbjct: 61  LEIVRKLRSDRMTKHIPILMVTAKTTEIDKVKGLDMGADDYMTKPFGVMELISRVKALLR 120

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R ++       + GP+ +  + R     G+   L  +E  +L  LM N G  +++  I +
Sbjct: 121 RSQIIPEEEVIQVGPVTMDQNKRKVSAYGKACELTYKEYELLHLLMQNAGIVISRDVILN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++G  D   E   ++ HI  LRKKL+       + + R +GY  + N
Sbjct: 181 RVWGT-DYEGESRTIDMHIKTLRKKLKEAGAM--IQTVRNVGYVFNEN 225


>gi|120435580|ref|YP_861266.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117577730|emb|CAL66199.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 224

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131
             +I IS   SL   L+  D G DD + KP H  E+ +R+ A+ RR +   +N      I
Sbjct: 73  CGVIIISANSSLDNKLEGLDLGADDYITKPFHLAELNSRIKAVLRRGQFGGDNTINFQEI 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE-NVV 190
           ++ +  R   V G+   L R+E  +L + + N+G+ ++K  I   ++G   + ++  + +
Sbjct: 133 KLDTMARSAYVNGKAITLTRKEYDLLLFFITNQGRVLSKAIIAEHLWGDDSDLLDNFDFI 192

Query: 191 ESHISKLRKKL 201
             HI+ LRKKL
Sbjct: 193 YVHINNLRKKL 203


>gi|307706889|ref|ZP_07643691.1| response regulator [Streptococcus mitis SK321]
 gi|307617762|gb|EFN96927.1| response regulator [Streptococcus mitis SK321]
          Length = 218

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 103/219 (47%), Gaps = 6/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       LE
Sbjct: 4   LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  SQVP++ ++ +   +  +  F    D  + KP     +  RV AI++R    
Sbjct: 62  VLAEIRKTSQVPVLMLTAFQDEEYKMSAFAFLADGYLEKPFSLSLLKVRVDAIFKRYYDM 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                    +V  +     + G+   +  +E  IL+YL+ N G+ + ++QI  A++   D
Sbjct: 122 GRVFSYKDAKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKATD 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E   + V++ +I    K+LR KL  D + + R +GY ++
Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216


>gi|224476547|ref|YP_002634153.1| putative response regulator protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421154|emb|CAL27968.1| putative response regulator protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 220

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ R IR     P+I I+        +   D G DD + KP    E+LAR+ A  RR  
Sbjct: 61  LEICRKIREVKSTPIIIITAKGDTYDKVAGLDYGADDYIVKPFDIEELLARIRATLRRQP 120

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               + +     +    RV  DG++ E       L + E  +L+ L  N    + + QI 
Sbjct: 121 AKDTITIKGIEIDKAAFRVTIDGQELE-------LTKTEYDLLQLLTENLNHVMQREQIL 173

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G +D  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 174 NHVWG-YDSEVETNVVDVYIRYLRNKLKPFNKEKVIETVRGVGYVI 218


>gi|90416240|ref|ZP_01224172.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [marine gamma proteobacterium HTCC2207]
 gi|90331965|gb|EAS47179.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [marine gamma proteobacterium HTCC2207]
          Length = 219

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 70  HSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           HSQ  + ++ ++     +  +   DSG DD + KP    E+LAR+  + RRL     +  
Sbjct: 68  HSQPEIQILILTARSGTEEKITGLDSGADDYLAKPFEVDELLARLRVLERRLGSAKTSLV 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + + +      + G+   L RRE  +L  LM N G+   ++ + + +Y  + E V 
Sbjct: 128 AVGDVVLDTTTNMVSMSGQNVELSRREYSLLRSLMENVGRVQTRSVLENRLYS-WGEEVS 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            N +E HI  LRK    KLG D + + R +GY ++
Sbjct: 187 SNALEVHIHNLRK----KLGSDFIKTVRGVGYRVN 217


>gi|33593530|ref|NP_881174.1| two-component response regulatory protein [Bordetella pertussis
           Tohama I]
 gi|33601058|ref|NP_888618.1| two-component response regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|33572886|emb|CAE42822.1| two-component response regulatory protein [Bordetella pertussis
           Tohama I]
 gi|33575493|emb|CAE32571.1| two-component response regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|332382938|gb|AEE67785.1| two-component response regulatory protein [Bordetella pertussis CS]
          Length = 229

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA + V P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSVLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +     GR   V  +   L  RE  +LE L+A  G+ V+KTQ+   + 
Sbjct: 120 AGGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEILLARSGRMVSKTQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKKL    G   + + R LGY ++
Sbjct: 180 E-WGEEVSTNAIEVYVHRLRKKLEPS-GVKII-TVRGLGYCLE 219


>gi|293604304|ref|ZP_06686711.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817181|gb|EFF76255.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 229

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA +S +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G +     GR   V  +   L  RE  +LE L+   G+ V+KTQ+   + 
Sbjct: 120 AGGGATMLKHGRLLFDQTGRVAIVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKKL    G   V + R LGY ++
Sbjct: 180 E-WGEEVSTNAIEVYVHRLRKKLEPS-GVKIV-TVRGLGYCLE 219


>gi|316936243|ref|YP_004111225.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603957|gb|ADU46492.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 219

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 15/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++ DG  A     G S++  +  E +     +A E  + +   ++  G  V 
Sbjct: 3   ILVVEDDAMIADGIRAGLSLAGASIDCVSGCE-DARAALAANEFSAVVLDIMLPDGSGV- 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R IRA     P++ ++        +   D+G DD + KP    E+    A +   ++
Sbjct: 61  DLLRAIRAAGDTTPVLLLTALDETPDRIAGLDAGADDYLGKPFDLDEL---SARLRAIIR 117

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + RA T    GP+R++    +  + G    L RRE  +L  LM   G   ++ ++   
Sbjct: 118 RRDGRAATCLEHGPVRLYPAEGNATLDGVSVALSRREFAVLHALMERPGVVRSRAELEER 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG  DE V+ N +E HI  LR     KLG   +++ R LGY +
Sbjct: 178 LYGWGDE-VDSNAIEVHIHNLRA----KLGRSAIETMRGLGYRM 216


>gi|220916055|ref|YP_002491359.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953909|gb|ACL64293.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 231

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 9/208 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + ++++D A V+    A     G  +E   ++   E L      DV  ++  L  G G  
Sbjct: 7   LVLVVEDEAPVRRFLRAALAAHGYRIEEAGTVAEAEQLAPGHNPDVFLLDLGLPDGDG-- 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            ++L R +R  ++ P+I +S     +  +   D+G DD + KP    E+LARV    R  
Sbjct: 65  -IDLARRLREWTRAPIIVLSARGREEDKVTALDAGADDYLTKPFGVNELLARVRVALRHA 123

Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +     E GP+R+    R+    G    L   E R+L  L  N GK +   QI   
Sbjct: 124 QAPPDGPPVVEVGPLRIDLARREITRSGAEVRLTPTEYRVLAMLARNAGKVLTHRQILRE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           ++G    A E + V   +++LRKKL ++
Sbjct: 184 VWG--PNATEAHYVRVQVAELRKKLEDE 209


>gi|163783571|ref|ZP_02178561.1| two component transcriptional regulator, winged helix family
           protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881191|gb|EDP74705.1| two component transcriptional regulator, winged helix family
           protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 225

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP + RE+LARV A+ RR   L +S      G + + +      ++G +  L 
Sbjct: 94  GADDYITKPFNMRELLARVKALLRRRKKLSLSGETLRVGELEIHTGEMKVLLKGRLVDLT 153

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +E  IL+ L++ RGK V++ +I S IY   D    E +V+++I ++R KL
Sbjct: 154 PKEFLILKKLLSKRGKVVSREEIVSEIYS-GDIPYYERIVDTYIYRIRTKL 203


>gi|121597839|ref|YP_990168.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|134284304|ref|ZP_01770993.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|237508768|ref|ZP_04521483.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242310946|ref|ZP_04809963.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|121225637|gb|ABM49168.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|134244344|gb|EBA44453.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|235000973|gb|EEP50397.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242134185|gb|EES20588.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
          Length = 232

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 55  GKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+G   L+  R +RA  S VP+I ++    +   +   ++G DD + KP    E+ ARV+
Sbjct: 70  GRG---LDFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVS 126

Query: 114 AIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR   + N   + G + V    R     G    L   E  +LE L+ + G  ++K Q
Sbjct: 127 AVARRYSGNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQ 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +Y   DE V  N +E H+S+LRK    KLG + +++ R LGY +
Sbjct: 187 LEERLYSFSDE-VGSNTIEVHVSRLRK----KLGAELIETVRGLGYRL 229


>gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 226

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123
           IR    +P+I ++   +    +    +G DD + KP   +E++ARV A  RR    K+  
Sbjct: 69  IRQKHSLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALRRANMDKIRG 128

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            R   G + +  DGR   V G +  L RRE  +L +L  N G+  ++  +F  ++   D 
Sbjct: 129 RRLVFGELELDQDGRAVTVAGSLISLTRREYELLLFLAENAGRAFSREHLFERVW--TDT 186

Query: 184 AVEE-NVVESHISKLRKKL 201
           A      V++HI  LR KL
Sbjct: 187 AASSLRTVDTHIKTLRLKL 205


>gi|75759288|ref|ZP_00739387.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493237|gb|EAO56354.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 240

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 74  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 133

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 134 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 193

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 194 D--DESFVEENTLNVNITRLRKKF-NELGIENSIETVRGLGY 232


>gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13]
          Length = 242

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 99/206 (48%), Gaps = 16/206 (7%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLD 89
           +++ EE L  +  E    I   L+   +  +E+ + +R H    P++ ++        + 
Sbjct: 32  AMDGEEGLNKAMEERFDMIVLDLMLPKKDGIEVCKELRQHKIHTPILMLTAKDDEFDKVL 91

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRL----------KVSNNRAET---GPIRVFSD 136
             + G DD + KP   RE++ARV AI RR+          KV  + +E    G +++  +
Sbjct: 92  GLELGADDYMTKPFSPREVVARVKAILRRMQQMTGNTEAPKVEEDTSEKIVIGDVKILPE 151

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
             +   + E   L  +E  +L YL  N+G+ + + Q+ SA++  +D A +  +V+ HIS 
Sbjct: 152 HYEAYFREERLELTPKEFELLVYLSKNKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISH 210

Query: 197 LRKKLRNKLGFDP-VDSKRFLGYSID 221
           LR+K+         + + R LGY ++
Sbjct: 211 LREKIETDTKKPTYIKTIRGLGYKLE 236


>gi|257870881|ref|ZP_05650534.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257805045|gb|EEV33867.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 224

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 7/159 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  S+VP+I IS   +    +   + G DD V KP     ++A++ A+ RR      N 
Sbjct: 67  IRETSKVPIIFISSRNTNMDMIMAMNMGADDFVTKPFEIDVLIAKINALLRRSYNYVENN 126

Query: 126 AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +ET     + +  D    ++  EV  L + E R+L  LM N GK +++ ++  A++   D
Sbjct: 127 SETLVHNGLTLNIDNSSMQINDEVIDLSKNEYRLLYILMKNHGKILSREKLLRALWD--D 184

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E  V++N +  +I++LR+K+      + +++K   GY +
Sbjct: 185 ERFVDDNTLTVNINRLRRKIEQAGMDNYIETKVGQGYIV 223


>gi|288939775|ref|YP_003442015.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288895147|gb|ADC60983.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 219

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 10/162 (6%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R  RA    +P++ ++   +    +D   +G DD + KP H  E++AR+ A+ RR 
Sbjct: 60  LEVLRHWRARGLSLPVLILTARDAWPERVDGLKAGADDYLGKPFHVEELIARLNALTRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              N R       +  D    +V    GEV  L   E R+L YLM N G+ ++K Q+   
Sbjct: 119 AAGNLRPALAVGGLSLDADRQQVICPDGEVRELTGTEFRLLRYLMLNPGRILSKAQLLEH 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +Y L  E   +N++E +I    ++LR K+G D + + R  GY
Sbjct: 179 VYELEAER-GDNLIEVYI----RRLREKIGRDRIQTLRGQGY 215


>gi|218130473|ref|ZP_03459277.1| hypothetical protein BACEGG_02062 [Bacteroides eggerthii DSM 20697]
 gi|217987352|gb|EEC53682.1| hypothetical protein BACEGG_02062 [Bacteroides eggerthii DSM 20697]
          Length = 229

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 18/177 (10%)

Query: 39  QSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92
           + + + D+SA    L+        G K+  + +  +  ++VP+I I+   +   T+  F+
Sbjct: 37  EEALKLDISAYNLLLLDVMMGEISGFKMASMLKKDKKTAKVPIIFITAKDTENDTVTGFN 96

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG-------RDPEVQGE 145
            G DD ++KP   RE+ ARV A+ RR        E  P ++  +        +   + GE
Sbjct: 97  LGADDYISKPFSLREVAARVKAVLRR--TQQGERERAPEQIVYESLVLDIIKKKVSIDGE 154

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
             PL ++E  IL  L+ N+G+  ++  I   I+   DE  V +  ++ +I++LRKK+
Sbjct: 155 EAPLTKKEFEILLLLLQNKGRVFSREDILGRIWS--DEVYVLDRTIDVNITRLRKKI 209


>gi|114049392|ref|YP_739942.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113890834|gb|ABI44885.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 227

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+ +     P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR   S  
Sbjct: 65  RVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAG 121

Query: 125 RAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +A      GP  + +   +     E+  L   E ++ E  M ++G+  +KT +   IY  
Sbjct: 122 KASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  ++ NV+E  I +LRKKL     ++ +++ R  GY +
Sbjct: 182 -DFDLDSNVIEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|30468114|ref|NP_849001.1| ompR-like transcriptional regulator [Cyanidioschyzon merolae strain
           10D]
 gi|30409214|dbj|BAC76163.1| ompR-like transcriptional regulator [Cyanidioschyzon merolae strain
           10D]
          Length = 224

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 15/173 (8%)

Query: 42  AREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLDF 90
           A + ++A++ F I +   V+    +P++        IR  S VP++ ++    ++  +  
Sbjct: 32  ATDGINAVQQFRIHQPHLVILEVMIPKVDGFGVCQWIRTQSNVPIMMVTGLTQVKDKITA 91

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           F+ G DD V KP   REI AR+  + RR    +     G IR+    +      +   L 
Sbjct: 92  FELGADDYVVKPFCAREIEARIKGLLRRTN-QDQSWHLGAIRIHQ--KQVWKHNQPIRLT 148

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             E  +LE L+ + G+ V +  I   I+G +    E  VV+ HIS+LR KL +
Sbjct: 149 EMEWALLELLIRHPGQIVTRQTILKQIWG-YAWPNETRVVDVHISRLRAKLED 200


>gi|319790733|ref|YP_004152373.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315593196|gb|ADU34262.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 229

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 1/111 (0%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            D+G DD + KP    E+ AR+ A+ RR K + +    G +++    R     G    LP
Sbjct: 99  LDAGADDYLGKPFDLAEVEARLRALVRRAKGTEDIVLLGQLKLDRKARRFSTAGGPLDLP 158

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            RE  +L  LM+  G+ V+K  +   +   FDE++ +N +E+ IS+LRKKL
Sbjct: 159 AREFEVLWELMSPPGRTVSKRALSDKLSS-FDESLGDNALEAFISRLRKKL 208


>gi|212716927|ref|ZP_03325055.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660212|gb|EEB20787.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
          Length = 243

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +     P++ ++     Q  +     G DD V KP    E++AR+ AI RR   +  
Sbjct: 71  RIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQE 127

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + E  PI       +  D  D    G+   L   E ++L YLM N G+ ++K QI   ++
Sbjct: 128 QVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRN---------KLGFDP-VDSKRFLGYSI 220
             +D   +  +VES+IS LRKK+           K    P +++KR +GY I
Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGLTVEDENGEKRKVAPLIETKRGIGYMI 238


>gi|297625540|ref|YP_003687303.1| two component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|32452353|emb|CAD59399.1| putative two-component system regulatory protein [Propionibacterium
           freudenreichii subsp. shermanii]
 gi|296921305|emb|CBL55858.1| two component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 242

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 20/205 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRA-HSQVPLIGI 78
           ++ +E W  ++A     A+ A      + +           LE+ R +RA    VP+I +
Sbjct: 36  AMRYEGWEPTTAATGSDAVRAARDTNPDAIVLDMMLPDFDGLEVMRRVRAEQPDVPVIFL 95

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134
           +   ++   +    +G DD V KP    E++AR+ ++ RR   ++ R+E+    G + + 
Sbjct: 96  TAKDAVNDRIVGLTAGGDDYVTKPFSVEELMARLRSLLRRSGATSKRSESELIVGDLVLD 155

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +    G+   L   E  +L YLM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 156 EDSHEVTRGGDEIHLTATEFELLRYLMRNPKRVLSKAQILDRVWN-YDFGGQANVVELYI 214

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGY 218
           S LRKK+    G +P + + R  GY
Sbjct: 215 SYLRKKI--DAGREPMIHTMRGAGY 237


>gi|73855984|gb|AAZ88691.1| putative 2-component transcriptional regulator [Shigella sonnei
           Ss046]
          Length = 280

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 118 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 177

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 178 LNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 237

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 238 FDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 274


>gi|262042303|ref|ZP_06015468.1| two-component response regulator QseB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040367|gb|EEW41473.1| two-component response regulator QseB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 219

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            +L++D  L+ DG  A     G S++ F + LE +  L S A  D + ++  L G  G  
Sbjct: 3   ILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYS-APYDAAILDLTLPGIDGLD 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   R    H  V ++   D  +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 62  ILREWRDKGRHEPVLILTARD--ALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRA 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++    G + +  +     + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 HGQSSSELHHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D+ V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDDEVSSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|226951618|ref|ZP_03822082.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226837648|gb|EEH70031.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 225

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 12/167 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +++ + IR  + +P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  MQILKQIRQRTAMPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALLRRGN 120

Query: 119 LKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             ++ N+  T     G + +  +      +GE   L  RE  IL  ++ +  K  +K  +
Sbjct: 121 TVMNQNKGNTQLLKSGDLILDVEQHLATFKGEQIELSNREWAILIPMVTHPNKIFSKANL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +Y  FD  V  N +E ++  LR     KLG D + + R LGY +
Sbjct: 181 EDKLYD-FDSEVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 222


>gi|15887970|ref|NP_353651.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15155576|gb|AAK86436.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 225

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 4/163 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L L + +RA S ++P++ ++    +   ++  ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LNLVKSLRAASIRIPILFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELTARINALVRRP 119

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +     R   G + +    R     G+   L  RE  +LE LM N G+ + KT     I
Sbjct: 120 PITTEKTRLRVGDLEMNLVTRTTSRGGQRIDLLPREFSLLELLMRNEGRILTKTMFLEKI 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  F+   + +VVE+HIS+LR K+        + + +  GY++
Sbjct: 180 WN-FNFDPQSSVVETHISRLRAKIDKPFDQPLLHTVKNTGYTL 221


>gi|332530381|ref|ZP_08406326.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040192|gb|EGI76573.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 225

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 6/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGP 130
           +P++ ++   +L+  ++  D G DD + KPI   E+ AR+ A+ RR      +AE   G 
Sbjct: 73  LPVLVLTARDTLEQRIEGLDLGADDYLIKPIALDELAARLRAMLRRATGRATQAEWVHGD 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +R     +    Q +   L  RE  +LE L+ N  + ++KTQ+   +Y       E N +
Sbjct: 133 LRYDPASKQVHWQDKPVELTGREISLLEVLLKNPQRVLSKTQLLEQLYDWGGGEPESNAL 192

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E HI  LR+K+   +    V + R LGY++
Sbjct: 193 EVHIHHLRRKIAPGV----VRTVRGLGYAL 218


>gi|296448535|ref|ZP_06890411.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296253953|gb|EFH01104.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 230

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 14/171 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  +PRI     Q+ ++ ++   ++   +D  ++G DD + KP +  E++AR+    
Sbjct: 57  GDAISIIPRIREKQPQIRIMMLTALDAVDERIDALEAGADDYLTKPFNLDELIARIRVQL 116

Query: 117 RRLKVSNNRAETG--PIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           R       R +T   P+R+       D R   V+GE   L R+E  +LE L+ +  + V+
Sbjct: 117 R------GRGQTALRPVRIGGLSFDLDQRVVTVRGEDVVLARQELLLLEALVRSANRIVS 170

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +++ +YG   E V+E+ + S +S+LR +L        + S R LGY I
Sbjct: 171 RETLYAHLYGRGME-VQEHALTSLVSRLRARLAELDAGVEIRSARALGYRI 220


>gi|291523295|emb|CBK81588.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 20/181 (11%)

Query: 41  SAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLD 89
            A +   A EAF IG    VL    +P+I        IR  S VP+I IS   S      
Sbjct: 29  CATDGQKACEAFDIGFYSIVLLDLMIPKITGMNVMKYIRQKSTVPIIIISAKDSDSDKTL 88

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDGRDPEVQ 143
               G DD + KP    E++AR+ A  RR      ++    +   GP+ +  +       
Sbjct: 89  GLGLGADDYITKPFSITEVMARIKANIRRNTEYAAVQPEQTKLVWGPLVMNLENHTVTKS 148

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKLR 202
           GE+  L  +E  IL  L+ N  +   K QI+S I+   D  + +EN V  HIS+LR K+ 
Sbjct: 149 GEIIELTAKEFDILRLLLENPQRVYTKAQIYSLIWN--DAYMGDENAVNVHISRLRTKIE 206

Query: 203 N 203
           +
Sbjct: 207 D 207


>gi|302530364|ref|ZP_07282706.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439259|gb|EFL11075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 233

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 7/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  SQVP++ ++     +  +     G DD V KP   +E+  RVA++ RR +
Sbjct: 65  LEVCRRLRQTSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELTLRVASVLRRAR 124

Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +      T     G +R+    R   + G   PL  RE  +L + +++ G   ++  +  
Sbjct: 125 MPRPEPPTAELVDGNLRLQMTARQATLDGAALPLTTREFDLLAFFLSHPGVAFSRADLLE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G   +  +++ V  H+ +LR+K+
Sbjct: 185 KVWGW--DFGDQSTVTVHVRRLREKI 208


>gi|291457450|ref|ZP_06596840.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
 gi|291381285|gb|EFE88803.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
          Length = 243

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +     P++ ++     Q  +     G DD V KP    E++AR+ AI RR   +  
Sbjct: 71  RIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TRE 127

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + E  PI       +  D  D    G+   L   E ++L YLM N G+ ++K QI   ++
Sbjct: 128 QVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR---------NKLGFDP-VDSKRFLGYSI 220
             +D   +  +VES+IS LRKK+           K    P +++KR +GY I
Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238


>gi|219855998|ref|YP_002473120.1| hypothetical protein CKR_2655 [Clostridium kluyveri NBRC 12016]
 gi|219569722|dbj|BAH07706.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 230

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 9/163 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R   + P+I ++     +  +   DSG DD + KP    E+LAR+ A+ RR    
Sbjct: 65  LKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRR---K 121

Query: 123 NNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     G ++      DP       + + F L  +E ++LE L+  +G  ++K  I   +
Sbjct: 122 SELVNEGILKYGDMKLDPLNLRLSCRKQEFKLTLKECQLLELLIKGKGIIISKNVIVEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++  VE N VE ++S LRKKLRN      + + R  GY I
Sbjct: 182 WG-YETDVEYNNVEVYVSFLRKKLRNIKSNVFIQTVRGAGYVI 223


>gi|160889014|ref|ZP_02070017.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492]
 gi|317479297|ref|ZP_07938432.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
 gi|156861481|gb|EDO54912.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492]
 gi|316904585|gb|EFV26404.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
          Length = 229

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  + +  +  +Q+P+I I+   +   T+  F+ G DD ++KP   RE+ ARV A+ 
Sbjct: 61  GFKMASMLKKDKKTAQIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVL 120

Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR        E  P ++           +   + GE  PL ++E  IL  L+ N+G+  +
Sbjct: 121 RR--TQQGETEHAPEQIVYKTLVLNVIKKKVCIDGEEAPLTKKEFEILLLLLQNKGRVFS 178

Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           +  I + I+   DE  V +  ++ +I++LRKK+
Sbjct: 179 REDILNRIWS--DEVYVLDRTIDVNITRLRKKI 209


>gi|187926854|ref|YP_001893199.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|241665183|ref|YP_002983542.1| transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728608|gb|ACD29772.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240867210|gb|ACS64870.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 221

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 14/203 (6%)

Query: 28  GFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           G+N+      ++ ++W+ ++  E +        G+G   LE  R   AH  VP+I  S  
Sbjct: 25  GYNATWVRRLVDAQKWITTNTFEAIVLDLGLPDGEGHVFLEELRA--AHRDVPVIIASAR 82

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140
            +L   L   D+G DD + KP    E++AR+ A+ RR    S N+   G + V    +  
Sbjct: 83  DALSERLKGLDAGADDFLVKPFPVDELIARLRAVLRRHAGQSTNQWSVGNLVVEPSQKRV 142

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
              G+V  L  RE ++L  L+    + V +  +  A+Y   D +V  N +E  I  LR+ 
Sbjct: 143 TQDGQVIELTPREYQLLLELVRRAHRWVPRETLMDALYREGD-SVSANALEVVIHHLRR- 200

Query: 201 LRNKLGFDPVDSKRFLGYSIDWN 223
              KLG + + + R +GY I  N
Sbjct: 201 ---KLGNETIQTIRGVGYMIGGN 220


>gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           R +R  S +P+I ++        +  F+ G DD + KP   +E++ARV A+ RR +    
Sbjct: 65  RDVRERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRGNTA 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +S++    GP+++  D     +  E  P   RE  +L +L  N  +  ++ Q+   ++G 
Sbjct: 125 ISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +D   +   V++H+ K+R+KL
Sbjct: 184 YDFYGDARTVDTHVKKIREKL 204


>gi|300790441|ref|YP_003770732.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799955|gb|ADJ50330.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 14/215 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           R LV +G+ A     G   EG        W  +    DV  ++  L    G +VL+  R+
Sbjct: 18  RGLVAEGFTADVAHTG--REGL-------WRATEHAYDVVVLDIMLPELSGYEVLK--RL 66

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
             A +  P++ ++         D FD G DD ++KP     ++AR+ A+ RR   +    
Sbjct: 67  RAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLIARLRALLRRGAPARPAV 126

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E G +R+    R      +   L  RE  +LE+L+   G  ++K +I S ++    +  
Sbjct: 127 LEAGDLRLDPSARTVHRGQKRIELTAREFGLLEFLLRRTGAALSKNEILSHVWDAHYDG- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +ENVVE +I  LR+K+    G   +++ R +GY +
Sbjct: 186 DENVVEVYIGYLRRKIDAPFGTHTIETVRGVGYRL 220


>gi|300113904|ref|YP_003760479.1| winged helix family two component transcriptional regulator
           [Nitrosococcus watsonii C-113]
 gi|299539841|gb|ADJ28158.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus watsonii C-113]
          Length = 219

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 9/149 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130
           +P++ ++   +    L+   +G DD ++KP H  E+L RV A+ RR    V++ R E G 
Sbjct: 73  LPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSHGTVNSPRLEAGG 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +  D +      + + L R E R+L   M + GK +++ ++   +Y    E  + NV+
Sbjct: 133 LALDEDRQSVWQGDQEYELTRGEFRLLRCFMLHPGKVLSRMELNEHLYDGESER-DSNVL 191

Query: 191 ESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
           E HIS+LR+KL      DPV +++R  GY
Sbjct: 192 EVHISRLRRKL-----GDPVIETRRSQGY 215


>gi|238763581|ref|ZP_04624542.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC
           33638]
 gi|238698213|gb|EEP90969.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC
           33638]
          Length = 239

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 11/183 (6%)

Query: 36  EWLQSSAREDVSAIEAF--------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87
           +WL + A E V+A+           L+  G   + + R IR  S VP++ ++        
Sbjct: 39  QWLTNGA-EVVAAVRQAPPAIILLDLMLPGSDGISICREIRRFSDVPIMMVTAKTEEIDR 97

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEV 146
           L   + G DD + KP   RE++ARV  I RR +    + +E+ P+ +         QG  
Sbjct: 98  LLGLEIGADDYICKPYSPREVVARVKTILRRCQQQREQPSESAPLLIDESRFQASYQGHF 157

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L   E R+L+ L    G   ++ Q+ + +Y  +   V +  ++SHI  LR+KL +  G
Sbjct: 158 LELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKLESLDG 216

Query: 207 FDP 209
             P
Sbjct: 217 EKP 219


>gi|77164853|ref|YP_343378.1| two comoponent transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|254433825|ref|ZP_05047333.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|76883167|gb|ABA57848.1| two compnent transcriptional regulator, winged helix family
           [Nitrosococcus oceani ATCC 19707]
 gi|207090158|gb|EDZ67429.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 219

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 9/149 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130
           +P++ ++   +    L+   +G DD ++KP H  E+L RV A+ RR    V++ R E G 
Sbjct: 73  LPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSHGTVNSPRLEAGG 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +  D +      + + L R E R+L   M + GK +++ ++   +Y    E  + NV+
Sbjct: 133 LALDEDRQSVWQGDQEYELTRGEFRLLRCFMLHPGKVLSRMELSEHLYDGESER-DSNVL 191

Query: 191 ESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
           E HIS+LR+KL      DPV +++R  GY
Sbjct: 192 EVHISRLRRKL-----GDPVIETRRNQGY 215


>gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 229

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR +S +P+I ++    ++  +   D G DD V KP    E+ ARV A  R+   
Sbjct: 63  EVLKKIRENSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALRKRNP 122

Query: 122 SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S  +       +  D    EV  QG    L ++E  +LE+LM N    +++ +I  +++G
Sbjct: 123 SIKKDVLKFAGIVMDLTTHEVRRQGVKIDLTKKEFDLLEFLMRNANIALSREKILRSVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + NVV+ +I  LR K+ +      + + R +GYS+
Sbjct: 183 -YDYYGDTNVVDVYIRYLRSKIDDPFDRKLIHTIRGVGYSL 222


>gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51]
 gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           R +R  S +P+I ++        +  F+ G DD + KP   +E++ARV A+ RR +    
Sbjct: 65  RDVRERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRGNTA 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +S++    GP+++  D     +  E  P   RE  +L +L  N  +  ++ Q+   ++G 
Sbjct: 125 ISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +D   +   V++H+ K+R+KL
Sbjct: 184 YDFYGDARTVDTHVKKIREKL 204


>gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR
          Length = 214

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 7/160 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR  
Sbjct: 61  LEICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-- 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + +   I V        V G    L + E  +L  L  N+   + + QI + ++G 
Sbjct: 119 ----QPQKDIIDVNGTLLKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG- 173

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 174 YNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 213


>gi|313904165|ref|ZP_07837544.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470967|gb|EFR66290.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 231

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R IR  S+VP+I ++     +  L  F+ GVD+ + KP   + ++ARV AI RR   
Sbjct: 65  QVCREIRKESKVPIIMLTARSEERDELLGFELGVDEYIAKPFSPKILVARVEAILRRTNQ 124

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G + +        V G+   L  +E  +L Y + N G  +++ +I + ++ 
Sbjct: 125 ISADETLSIGGVTINKSAHLASVDGKTMDLSYKEFELLTYFLENAGIALSREKILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR K+  K
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKMGEK 208


>gi|290475831|ref|YP_003468723.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Mg+] (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289175156|emb|CBJ81959.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Mg+] (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 227

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A+++        + G  ++   + +  ++       D++ ++  L   GE  L
Sbjct: 3   ILIIEDEAILRHHLTVQLRELGHQVDAAENTKEADYYLKENHPDIAIVDLGL--PGEDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  R+    +P++ ++ + S Q  +   ++G DD V KP    EI AR+ A+ RR  
Sbjct: 61  SMIRRWRSDQVNLPILILTVHDSWQEKVTVLNAGADDYVTKPFRLEEINARIQALMRRHS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E  P  +    ++  V      L   E  I+E LM N GK V+K  +   +Y 
Sbjct: 121 GLASQLVELSPFLIDLSRKEFSVNKNSIKLTAFEYTIIETLMRNNGKVVSKESLMRQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK+ N+   + + + R  GY  D
Sbjct: 181 -DAELRESHTIDVLMGRLRKKISNEWSDEVIVTVRGQGYRFD 221


>gi|229060772|ref|ZP_04198127.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228718419|gb|EEL70051.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 7/148 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +      S
Sbjct: 64  VCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYSS 123

Query: 123 NNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                T        I V    R   V GE   +   E  IL YLM N+G  +++ Q+ + 
Sbjct: 124 TINVSTADTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYLMQNQGIVISREQLITK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           I+G ++ A ++  V SHI  LR KL  K
Sbjct: 184 IWG-YEFAGDDRTVNSHIRNLRHKLGEK 210


>gi|229175552|ref|ZP_04303062.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228607948|gb|EEK65260.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 231

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGTEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223


>gi|226953146|ref|ZP_03823610.1| DNA-binding heavy metal response regulator [Acinetobacter sp. ATCC
           27244]
 gi|294650734|ref|ZP_06728085.1| DNA-binding heavy metal response regulator [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226836116|gb|EEH68499.1| DNA-binding heavy metal response regulator [Acinetobacter sp. ATCC
           27244]
 gi|292823380|gb|EFF82232.1| DNA-binding heavy metal response regulator [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 237

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 5/147 (3%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++ E  R  R    +P++ ++   +L   L  F SG DD + KP    E++ R+ A
Sbjct: 68  GSGYELCEWLRTERG-LDIPVLMLTARDTLDDKLKGFASGTDDYLVKPFDFNELVVRIRA 126

Query: 115 IYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + +R   +VSN++ +   + + S  +     G++  LP  + ++L+ LM N  K ++K +
Sbjct: 127 LIKRAMGEVSNSKLQIHDLVLDSATQQITRAGKIIDLPPIQFKLLKILMRNSPKVISKQE 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRK 199
           I   ++G  DE  E + + SHI  LRK
Sbjct: 187 IVMELWG--DEEPESDALRSHIYNLRK 211


>gi|222110613|ref|YP_002552877.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221730057|gb|ACM32877.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 225

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 15/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---E 58
            ++++D ALV  G  A     G+ L GF S       Q+ A       +A ++  G    
Sbjct: 3   ILIVEDNALVASGIQA-----GLELHGFTSDTAGSVAQAQAHMTSRQFDACVLDLGLPDG 57

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIY 116
             + L R  RA    +P++ ++   +++  +  F +G DD + KP   +E +L   A + 
Sbjct: 58  DGISLLRQWRAKGLALPVLILTARSTIEDKVAGFQTGTDDYLTKPFDLQELVLRLRALLR 117

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    +++    G  +V     +    G    + RRE  +L+ L+   G+ ++  Q+  +
Sbjct: 118 RAGGRTSDLLALGDCQVNMATGEVTRNGVAIDISRREWALLQALLQAHGRVLSAAQLHDS 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YGL D+ V  N V  H+  LRK    KLG D +D+ R LG+ +
Sbjct: 178 LYGL-DQDVGSNTVNVHVHHLRK----KLGADVIDTVRGLGFRL 216


>gi|126463834|ref|YP_001044947.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105645|gb|ABN78175.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 220

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------G 55
            ++++D  ++ DG        G+ L GF          + A  D    EA ++      G
Sbjct: 3   ILIVEDDPVLADGLQV-----GLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDG 57

Query: 56  KGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
            G   LEL   +RA  + VP++ ++    L   +   D G DD + KP    E+ AR+ A
Sbjct: 58  SG---LELLAELRAAREPVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRA 114

Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR   ++  R E   + +     +    G    L  RE  +L  LMA+    ++K QI
Sbjct: 115 LGRRPAALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +YG + E +E N +E H+ KLR KL +  GF  +++ R +GY +
Sbjct: 175 EEQLYG-WQEEIESNAIEVHVHKLRAKLGH--GF--IETVRGVGYRL 216


>gi|76788272|ref|YP_330651.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77405138|ref|ZP_00782237.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77410895|ref|ZP_00787252.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|76563329|gb|ABA45913.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77163113|gb|EAO74067.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77176281|gb|EAO79051.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
          Length = 223

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 3/152 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAET 128
           SQV ++ ++   +++  +   D G DD + KP    E++AR+ A+ RR   +VS++  + 
Sbjct: 71  SQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTNRQVSSDDIQI 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             I +    +       +  L  +E  +LEYL  +R + +++ QI   ++  +D   E N
Sbjct: 131 QDITINLSTKQVWRNNNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVWD-YDYDGESN 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++  I  LR+KL N      + +KR LGY I
Sbjct: 190 IIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221


>gi|26986792|ref|NP_742217.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           putida KT2440]
 gi|148545318|ref|YP_001265420.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031082|ref|YP_001666313.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719251|ref|YP_001746939.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|325272074|ref|ZP_08138510.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|24981387|gb|AAN65681.1|AE016195_2 DNA-binding heavy metal response regulator, putative [Pseudomonas
           putida KT2440]
 gi|148509376|gb|ABQ76236.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166857570|gb|ABY95977.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757254|gb|ACA70570.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
 gi|324102770|gb|EGC00181.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 21/175 (12%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VLEL R  R +    ++ ++    L   +   ++G DD + KP    E+LARV A+ 
Sbjct: 59  GWQVLELLR--RKNCPSRIMMLTARSRLADKVRGLENGADDYLIKPFEFPELLARVRALM 116

Query: 117 RR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR         ++V++   +    R F DG+  ++  + F L       L YLM N G  
Sbjct: 117 RRSDHPASVEVIRVADLELDQSRHRAFRDGQRIDLTTKEFAL-------LHYLMRNTGVV 169

Query: 168 VAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +++TQI S ++ + FD   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 170 LSRTQIISQVWDMNFD--CDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLE 222


>gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 232

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 36/230 (15%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L  +GY     D+G+ +LE + S E           D+  ++  L   G   +EL R IR
Sbjct: 22  LESEGYQVTKADNGLDALEAYRSQEV----------DLILLDVML--PGMSGIELLRRIR 69

Query: 69  AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------- 118
           AH S   ++ ++   S++  +   D G +D + KP    E+LAR+ A  R          
Sbjct: 70  AHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQGKPLPEEE 129

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L  ++ +   G   V  DGR          L  RE  +L YL+ N+ + + + QI
Sbjct: 130 AAGEWLTAADLKLNEGTREVIRDGRR-------IDLTPREFDLLVYLLKNKRQVLNREQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +A++G +D   + NVV+ +I  +RKK+ +    + + + R +GY +  N
Sbjct: 183 LAAVWG-YDYYGDTNVVDVYIRYVRKKIDHGGTQELIHTVRGVGYVLKEN 231


>gi|288941366|ref|YP_003443606.1| two component transcriptional regulator PhoB, winged helix family
           [Allochromatium vinosum DSM 180]
 gi|288896738|gb|ADC62574.1| two component transcriptional regulator PhoB, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 228

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 8/151 (5%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   LEL + ++ + +   +P+I IS     +  +   D+G DD + KP   RE++ARV 
Sbjct: 57  GRSGLELAQQLKQNPKTKSIPIIMISARGEEEDRVKGLDTGADDYIAKPFSPREMVARVK 116

Query: 114 AIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR K   + +  E G + + + G      G    +   E R+L + MA+  +  +++
Sbjct: 117 AVLRRAKPDEATDEIEIGGLVMDNLGHRVTAGGRPIEVAPTEYRLLHFFMAHADRAFSRS 176

Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           Q+   ++G  D+  VEE  V+ H+ +LRK L
Sbjct: 177 QLLDQVWG--DQVYVEERTVDVHVRRLRKAL 205


>gi|218550275|ref|YP_002384066.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii
           ATCC 35469]
 gi|218357816|emb|CAQ90460.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia fergusonii ATCC 35469]
          Length = 219

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDRLIGDGIKTGLSKMGFSVDWFTGGREGKEALYSAPYDAIILDLTLPGIDGRDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R      + P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LREWR--ENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE  PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LR+KL +  GF  + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHIHHLRRKLGS--GF--IRTVHGIGYTL 216


>gi|153953197|ref|YP_001393962.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146346078|gb|EDK32614.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 224

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  + +R  ++ +P++ ++    + +    F+ G+DD + KPI   E+L R+ A+ RR  
Sbjct: 62  EFAKTVRKQNKNIPILFMTARDDISSKKKGFNIGIDDYMVKPIELDELLMRIEALLRRAN 121

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++ R    G + + +D     + GE  PL  RE  IL  L++   +   +TQ+    +G
Sbjct: 122 IASERKLAVGSLTLNADENMAYLNGEEVPLTVREFEILFKLLSYPKRTFTRTQLMDEFWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  E+     V+  I+KLR KL      + V + R LGY +
Sbjct: 182 IESESTPR-TVDVSITKLRSKLAECKDIEIV-TVRSLGYKV 220


>gi|89901889|ref|YP_524360.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89346626|gb|ABD70829.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 239

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 101/215 (46%), Gaps = 32/215 (14%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIG-------KGEKV------LELPRI--------IR 68
           ++ E  +WL  + R++   ++    G       K EK       L LP++        +R
Sbjct: 23  DNTELAQWLGRTLRKEQYTVDCIDNGADADFALKSEKYNLIILDLALPKLDGKEVLRRLR 82

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           A   Q P++ ++   ++Q+ +   D G DD + KP    E+ AR+  + RR   S+ +A 
Sbjct: 83  ARDDQTPVLILTANNTIQSRVSKLDQGADDYMAKPFEIEELEARIRMLLRR---SSGQAS 139

Query: 128 ----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G +   ++ R+  +  ++  L  RER +LE L+   G  V K  +  +++ L ++
Sbjct: 140 PLIACGDLSYNTNTREFHISQQLLALTPRERAVLEMLLRKSGTTVTKHALAQSLFSLSED 199

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           A   + +E ++ +LRKKL +      + + R LGY
Sbjct: 200 A-STDAIEIYVHRLRKKLEHSSA--QIMTLRGLGY 231


>gi|148254885|ref|YP_001239470.1| putative two-component response regulator [Bradyrhizobium sp.
           BTAi1]
 gi|146407058|gb|ABQ35564.1| putative two-component response regulator [Bradyrhizobium sp.
           BTAi1]
          Length = 224

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 2/154 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           R    +P+I ++    LQ  +    SG DD + KP    E++AR+ AI RR      R+ 
Sbjct: 68  RGSDPLPVIVLTARGGLQDRVGGLRSGADDYLVKPFALEELVARLEAILRRPGQLLGRSL 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           E G +   ++ R   V G       RE  +LE L+  +G+ V K  +   I+GL  E V 
Sbjct: 128 ELGNLVYDTESRQTFVAGTPRTFSARELSVLEILLRRQGRVVPKKAVEDHIFGLTGE-VG 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N VE ++S+LRK+L        + + R +GY +
Sbjct: 187 SNAVEVYVSRLRKQLSEYGATVVIHTIRGVGYMM 220


>gi|23464633|ref|NP_695236.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|46190381|ref|ZP_00206445.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189438868|ref|YP_001953949.1| response regulator [Bifidobacterium longum DJO10A]
 gi|227546731|ref|ZP_03976780.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239620707|ref|ZP_04663738.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312132322|ref|YP_003999661.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481711|ref|ZP_07940743.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689673|ref|YP_004209407.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691634|ref|YP_004221204.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23325190|gb|AAN23872.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189427303|gb|ACD97451.1| Response regulator [Bifidobacterium longum DJO10A]
 gi|227212693|gb|EEI80574.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239516283|gb|EEQ56150.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291516232|emb|CBK69848.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311773616|gb|ADQ03104.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916825|gb|EFV38215.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456490|dbj|BAJ67112.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461009|dbj|BAJ71629.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 243

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +     P++ ++     Q  +     G DD V KP    E++AR+ AI RR   +  
Sbjct: 71  RIRQEGINAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TRE 127

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + E  PI       +  D  D    G+   L   E ++L YLM N G+ ++K QI   ++
Sbjct: 128 QVEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR---------NKLGFDP-VDSKRFLGYSI 220
             +D   +  +VES+IS LRKK+           K    P +++KR +GY I
Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238


>gi|325289382|ref|YP_004265563.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964783|gb|ADY55562.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L + IR +S +P+I ++        +     G DD + KP     + ARV A+ RR +
Sbjct: 61  MDLCKEIRTYSNIPIIMLTACDLETDEVSGLLVGADDYITKPFSLSVLRARVEALLRRTE 120

Query: 121 V-SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             S +   +G  ++      F  G + E+     P+   E R+L +LM N G+ ++K QI
Sbjct: 121 SESRHIIHSGKYKLDAELCKFFRGEEEEI-----PISATEYRLLSFLMTNAGQVLSKEQI 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            S ++      V+EN +  +IS+LR KL +    +P   K   G    WN
Sbjct: 176 LSFLWDNEGNFVDENTLPVNISRLRAKLEDDPK-NPQTIKTIHGIGYIWN 224


>gi|291438629|ref|ZP_06578019.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341524|gb|EFE68480.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 268

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R    VP++ ++   S++  +    +G DD V KP    E++AR+  + RR   +
Sbjct: 105 LGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSGAA 164

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + RA +    G + +  D  +    GE   L   E  +L +LM N  + ++K QI   ++
Sbjct: 165 DRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDRVW 224

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +D     NVVE +IS LRKK+    G +P + ++R  GY I
Sbjct: 225 S-YDFGGHANVVELYISYLRKKI--DAGREPMIHTRRGAGYMI 264


>gi|238922420|ref|YP_002935934.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
 gi|238874092|gb|ACR73800.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
          Length = 236

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 3/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
           A  Q+P++ I+   S       F SG DD + KP++  E++ RV A+ RR ++ N ++  
Sbjct: 83  AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G      D        E   LP++E  +L  L A+  +   K Q+   ++G   EA + 
Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPDRTFTKQQLMDEVWGYETEA-DP 201

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +E HI ++R++ ++   F+ V + R +GY +
Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233


>gi|224540237|ref|ZP_03680776.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518116|gb|EEF87221.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 229

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  L +  +  +QVP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ 
Sbjct: 61  GFKMASLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120

Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR        E  P ++           +   + GE  PL ++E  IL  L+ ++G+  +
Sbjct: 121 RR--TQQGEPERAPEQISYKTLVIDIVKKKVSIDGEEAPLTKKEFEILLLLLQSKGRVFS 178

Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           +  I + I+   DE  V +  ++ +I++LRKK+
Sbjct: 179 REDILARIWS--DEVYVLDRTIDVNITRLRKKI 209


>gi|158341219|ref|YP_001522417.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158311460|gb|ABW33071.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 247

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKV 121
           R IR  S+VP+I ++    +   +   + G DD + KP   +E+ +RV  I RR   LK 
Sbjct: 76  RAIRKTSRVPIIMLTALSEVGDRITGLEMGADDYMVKPFSPKELESRVRCIIRRMGSLKP 135

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N R       G + + ++ R      E   L   E  +LE L +  G  V++ ++   +
Sbjct: 136 FNYRVTGVLNIGSLHIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELLEKV 195

Query: 178 YGLFDEA-VEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +G  + + V+  VV+ H+S+LR KL+ N++G + + + R +GY++  
Sbjct: 196 WGYSNGSIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTLKC 242


>gi|314938355|ref|ZP_07845646.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314942278|ref|ZP_07849126.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314951415|ref|ZP_07854465.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314993174|ref|ZP_07858559.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314996059|ref|ZP_07861136.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313589748|gb|EFR68593.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592351|gb|EFR71196.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313596372|gb|EFR75217.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313598895|gb|EFR77740.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313642253|gb|EFS06833.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
          Length = 229

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 7/140 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122
           IR  S+VP+I IS   +    +   + G DD V KP     ++A++ A+ RR     ++S
Sbjct: 72  IREVSKVPIIFISSRNTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRRSYNYTELS 131

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       I +  D    E+ GE+  L + E R+L  LM + GK +++ ++  A++   D
Sbjct: 132 SEMMSHNGITLNVDNGSMEINGEIIDLSKNEYRLLFILMKHNGKILSREKLLRALWD--D 189

Query: 183 EA-VEENVVESHISKLRKKL 201
           E  V++N +  +I++LR+K+
Sbjct: 190 ERFVDDNTLTVNINRLRRKI 209


>gi|312623478|ref|YP_004025091.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203945|gb|ADQ47272.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 223

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSN- 123
           IR  S+VP++ IS        +   + G DD + KP     + A+V A+ RR    VSN 
Sbjct: 67  IRKISKVPIMFISSASDNMNIIMAINMGGDDFIEKPFDLNVLTAKVHALIRRTYSFVSNI 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + +  +      Q +   L + E +IL+ LM N G+ V++ +I   ++   D 
Sbjct: 127 NLIEYKGVILNLNNTTLLYQNKKIELTKNEYKILQLLMENAGRVVSREEIMQHLWQ-SDS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            +++N +  +I++LRKKL  +LG +  + +K+ +GY ID
Sbjct: 186 FIDDNTLTVNITRLRKKLA-ELGLENFIKTKKGIGYIID 223


>gi|258543851|ref|ZP_05704085.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis
           ATCC 15826]
 gi|258520891|gb|EEV89750.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis
           ATCC 15826]
          Length = 229

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 24/161 (14%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----------LKVS 122
            P++ +S    +   ++   +G DD + KP    E+LARV A+ RR          L+V+
Sbjct: 73  TPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQALTRRRGGEIQDQMMLEVA 132

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
           + + +    +V   GR   +Q        RE R+LEYLM+N G+ V +T +   ++   F
Sbjct: 133 DLQLDRLKRKVTRSGRKINLQP-------REFRLLEYLMSNAGQVVTRTMLLEKVWEYHF 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           D   + NV++ HIS+LR K+     FDP  + ++R  GYS+
Sbjct: 186 DP--QTNVIDVHISRLRSKIDKD--FDPPLIHTERGAGYSL 222


>gi|229552020|ref|ZP_04440745.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314597|gb|EEN80570.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 227

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 27/215 (12%)

Query: 6   DDRALVKD----GYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           D +AL+KD     Y  +   DG+ +L  F+            + D+  ++  L    GE 
Sbjct: 15  DIQALLKDVLTPTYTVIQAYDGIQALTAFHR----------EQPDLIILDLMLPNVTGES 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           VL     IR  SQVP++ ++       T+     G +D + KP    E+LAR+    R++
Sbjct: 65  VL---TTIRKTSQVPVLVLTAIQEKAKTVALLQQGANDYLTKPFDIDELLARIQVQLRQV 121

Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                ++N++ + G I++        V  +   LP++E  +L  +M +  +   K+Q++ 
Sbjct: 122 SGQPLMTNDQLKVGEIQLDPKRHVVTVNQQTLTLPKKEYDMLALMMRDPHQVFDKSQLYE 181

Query: 176 AIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            ++G  F  A  +N +  HIS LR K+ N+L  DP
Sbjct: 182 HVWGEPFLNA--DNTLNVHISNLRTKI-NELAHDP 213


>gi|229095884|ref|ZP_04226862.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229101998|ref|ZP_04232711.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229114837|ref|ZP_04244250.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228668529|gb|EEL23958.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228681385|gb|EEL35549.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228687508|gb|EEL41408.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 218

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  G+   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEADGDPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|163759095|ref|ZP_02166181.1| putative two-component response regulator transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
 gi|162283499|gb|EDQ33784.1| putative two-component response regulator transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
          Length = 241

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 5/131 (3%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLP 150
           +G DD + KP    E+LAR+  + RR    +       G + +     +    G+  PL 
Sbjct: 109 AGGDDYLTKPYAFSELLARIEILGRRKGARDQETTYRVGDLELDRLSHEVRRAGQPIPLQ 168

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209
            RE R+LEYLM N G+ V +T +   ++   FD   + NV++ HIS+LR K+    G   
Sbjct: 169 PREYRLLEYLMKNAGQVVTRTMLLEHVWDYHFDP--QTNVIDVHISRLRSKIEKDFGEPL 226

Query: 210 VDSKRFLGYSI 220
           + + R  GY +
Sbjct: 227 LKTVRGAGYMM 237


>gi|70728820|ref|YP_258569.1| DNA-binding response regulator TctD [Pseudomonas fluorescens Pf-5]
 gi|68343119|gb|AAY90725.1| DNA-binding response regulator TctD [Pseudomonas fluorescens Pf-5]
          Length = 223

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+      +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  + 
Sbjct: 63  LARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLG 122

Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             R +   +  +  D R   +  E+  L  RE+ +LE L+A  G+ ++K Q+ S ++GL 
Sbjct: 123 GERQQRCGVLAYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQLASQVFGL- 181

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE    + +E ++ +LRKKL
Sbjct: 182 DEEASPDAIEIYVHRLRKKL 201


>gi|293364938|ref|ZP_06611655.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307703191|ref|ZP_07640137.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|331266859|ref|YP_004326489.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|291316388|gb|EFE56824.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307623266|gb|EFO02257.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|326683531|emb|CBZ01149.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 225

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QGEV  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +  +GF  +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222


>gi|239930282|ref|ZP_04687235.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 256

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R    VP++ ++   S++  +    +G DD V KP    E++AR+  + RR   +
Sbjct: 93  LGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSGAA 152

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + RA +    G + +  D  +    GE   L   E  +L +LM N  + ++K QI   ++
Sbjct: 153 DRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDRVW 212

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +D     NVVE +IS LRKK+    G +P + ++R  GY I
Sbjct: 213 S-YDFGGHANVVELYISYLRKKI--DAGREPMIHTRRGAGYMI 252


>gi|229593403|ref|YP_002875522.1| phosphate regulon two-component system response regulator
           [Pseudomonas fluorescens SBW25]
 gi|312963904|ref|ZP_07778375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens WH6]
 gi|229365269|emb|CAY53596.1| phosphate regulon two-component system, response regulator
           [Pseudomonas fluorescens SBW25]
 gi|311281939|gb|EFQ60549.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens WH6]
          Length = 229

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G++ LE E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   ++  A   PI V     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRAGPTDGEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|209884019|ref|YP_002287876.1| DNA-binding response regulator [Oligotropha carboxidovorans OM5]
 gi|209872215|gb|ACI92011.1| DNA-binding response regulator [Oligotropha carboxidovorans OM5]
          Length = 220

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 6/170 (3%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            ++  G+ +  L  + R     P+I ++    +   +   + G DD + KP    E+LAR
Sbjct: 52  MMLPDGQGITFLRDLRRKGCVTPVIIMTALDQISDRIQGLNVGADDYMTKPFDLSELLAR 111

Query: 112 VAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ RR   + N   + G +++    R     G    L  RE  +LE  + + G+ ++K
Sbjct: 112 LNAVGRRYSGNPNPLVKIGDLQIDLAARTITRGGRPVNLTAREWALLEAFIQHPGQVLSK 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   +Y  F   VE N +E H+S++RK    KLG   V++ R +GY +
Sbjct: 172 EQLEERLYA-FGAEVESNTIEVHVSRMRK----KLGSAIVETVRGIGYRL 216


>gi|161367585|ref|NP_288428.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. EDL933]
 gi|161984954|ref|YP_407518.2| transcriptional regulatory protein YedW [Shigella boydii Sb227]
 gi|162139781|ref|NP_310734.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. Sakai]
 gi|209919389|ref|YP_002293473.1| transcriptional regulatory protein YedW [Escherichia coli SE11]
 gi|218689962|ref|YP_002398174.1| transcriptional regulatory protein YedW [Escherichia coli ED1a]
 gi|218705460|ref|YP_002412979.1| transcriptional regulatory protein YedW [Escherichia coli UMN026]
 gi|254161973|ref|YP_003045081.1| transcriptional regulatory protein YedW [Escherichia coli B str.
           REL606]
 gi|254793621|ref|YP_003078458.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. TW14359]
 gi|256017840|ref|ZP_05431705.1| transcriptional regulatory protein YedW [Shigella sp. D9]
 gi|260844365|ref|YP_003222143.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O103:H2 str. 12009]
 gi|260855938|ref|YP_003229829.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O26:H11 str. 11368]
 gi|260868559|ref|YP_003234961.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O111:H- str. 11128]
 gi|312973814|ref|ZP_07787986.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|209912648|dbj|BAG77722.1| two-component response regulator [Escherichia coli SE11]
 gi|218427526|emb|CAR08421.2| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli ED1a]
 gi|218432557|emb|CAR13450.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli UMN026]
 gi|242377633|emb|CAQ32391.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BL21(DE3)]
 gi|253973874|gb|ACT39545.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli B str. REL606]
 gi|253978068|gb|ACT43738.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BL21(DE3)]
 gi|254593021|gb|ACT72382.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O157:H7 str. TW14359]
 gi|257754587|dbj|BAI26089.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O26:H11 str. 11368]
 gi|257759512|dbj|BAI31009.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O103:H2 str. 12009]
 gi|257764915|dbj|BAI36410.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O111:H- str. 11128]
 gi|310332409|gb|EFP99644.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|320647173|gb|EFX16006.1| transcriptional regulatory protein YedW [Escherichia coli O157:H-
           str. 493-89]
 gi|320652458|gb|EFX20756.1| transcriptional regulatory protein YedW [Escherichia coli O157:H-
           str. H 2687]
 gi|320657782|gb|EFX25552.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|323152702|gb|EFZ38974.1| transcriptional activator protein irlR [Escherichia coli EPECa14]
 gi|323158555|gb|EFZ44569.1| transcriptional activator protein irlR [Escherichia coli E128010]
 gi|323174649|gb|EFZ60269.1| transcriptional activator protein irlR [Escherichia coli LT-68]
 gi|323180780|gb|EFZ66320.1| transcriptional activator protein irlR [Escherichia coli 1180]
 gi|323183951|gb|EFZ69338.1| transcriptional activator protein irlR [Escherichia coli 1357]
 gi|327253104|gb|EGE64758.1| transcriptional activator protein irlR [Escherichia coli STEC_7v]
 gi|332095480|gb|EGJ00496.1| transcriptional activator protein irlR [Shigella dysenteriae
           155-74]
 gi|332096928|gb|EGJ01917.1| transcriptional activator protein irlR [Shigella boydii 3594-74]
 gi|332343693|gb|AEE57027.1| transcriptional activator protein IrlR [Escherichia coli UMNK88]
          Length = 223

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 181 FDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217


>gi|18310175|ref|NP_562109.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110800369|ref|YP_695848.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168205438|ref|ZP_02631443.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209683|ref|ZP_02635308.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213127|ref|ZP_02638752.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168217845|ref|ZP_02643470.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169346754|ref|ZP_02865707.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|18144854|dbj|BAB80899.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110675016|gb|ABG84003.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169297106|gb|EDS79227.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170663026|gb|EDT15709.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712265|gb|EDT24447.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170715454|gb|EDT27636.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|182380100|gb|EDT77579.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 225

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 26/218 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+K+GY      +G  LE  + L+ E    +     +  I+ F          L +++R 
Sbjct: 20  LLKEGYTVFKAVNG--LEALDILKKEHIHLALLDVMMDGIDGF---------NLLKMLRE 68

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVS--NNRA 126
            SQ+P+I ++        +     G DD V KP    E++AR+ +  RR  K S  N   
Sbjct: 69  WSQIPVIFLTAKIEDDDKILGLGLGADDYVIKPFKPVELMARIKSNLRRCYKYSGENELI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV- 185
           + G + +  +G   +  GE+  L  +E +ILE LM+N G+   K QI+  ++   +E + 
Sbjct: 129 KIGNLELSKEGCTVKKDGEIVTLNAKEFKILEMLMSNIGRVFTKKQIYENVWQ--EEYLG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           ++N +  HIS LR K+      DP     + + R +GY
Sbjct: 187 DDNTIMVHISHLRDKIEE----DPKNPCKIKTIRGIGY 220


>gi|309777330|ref|ZP_07672291.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914871|gb|EFP60650.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 223

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 18/207 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +        D   L+ ++  E +  LQ  A   +  ++  L G  GE++
Sbjct: 7   ILIVEDDETIHEMIKEYLQKDYTCLDAYSGTEAQLLLQQ-ADASLVLLDLMLPGMSGEQL 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  +      Q+P+I +S   S+   +   + G DD + KP   +E+ AR+    R+  
Sbjct: 66  LQELK----QKQLPIIVLSAKDSIDDRVTLLNEGADDYLCKPFDLKELKARIQVQLRK-- 119

Query: 121 VSNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              N  +TG      +R+  D R  E++G    L R E RILE LM +  +   K +I+ 
Sbjct: 120 --RNPQQTGELAVNGVRLLPDFRHMELEGSSIRLTRHEYRILELLMQDVKRARTKKEIYE 177

Query: 176 AIYGLFDEAV-EENVVESHISKLRKKL 201
             Y   D+ + ++  +  HIS +R KL
Sbjct: 178 --YAWEDDYLGDDKTINVHISNIRSKL 202


>gi|293374348|ref|ZP_06620675.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325841243|ref|ZP_08167344.1| putative response regulator protein GraR [Turicibacter sp. HGF1]
 gi|292647011|gb|EFF64994.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325489924|gb|EGC92271.1| putative response regulator protein GraR [Turicibacter sp. HGF1]
          Length = 223

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 6/156 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I ++   S    L   + G DD + KP + + +LAR+++I +R   S + +
Sbjct: 67  VRKSSDVPIIVVTSRDSELDELMSMNLGADDFITKPYNTQILLARISSILKRTYGSLSAS 126

Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ET    G     S+G     Q +   L + E +IL  L+ N+G+ V++  +   ++   D
Sbjct: 127 ETLCYKGLTLNLSNGSITYEQ-KTMELTKNELKILGCLIKNQGQIVSRDVLMEHLWK-SD 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             V++N +  ++++LRKKL      D ++++R LGY
Sbjct: 185 LFVDDNTLSVNVTRLRKKLEEIGLKDAIETRRGLGY 220


>gi|291615563|ref|YP_003518305.1| QseB [Pantoea ananatis LMG 20103]
 gi|291150593|gb|ADD75177.1| QseB [Pantoea ananatis LMG 20103]
 gi|327395832|dbj|BAK13254.1| transcriptional regulatory protein QseB [Pantoea ananatis AJ13355]
          Length = 223

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 5/205 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G S++ F S E      ++A  D   ++  L  +    L
Sbjct: 3   ILLIEDDRLIGDGIKAGLSKLGFSVDWFVSGEAGFQALTAAPWDAVVLDLSLPER--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R     VP++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILRQWRQQGHDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +       E  GE   L  RE  +LE  M N  + + ++Q+   +Y 
Sbjct: 121 GQLQPELRHGDVVLIPGNLCVERNGENIALKSRELALLELFMRNPDRVLTRSQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D  V  N VE HI  LRKKL N+
Sbjct: 180 TWDTEVSSNAVEVHIHHLRKKLGNR 204


>gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 224

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAET 128
           H+ V ++   D  S    +   D G DD + KP    E++AR+ A+ RR    S+N+   
Sbjct: 72  HTSVLMLTARD--SADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRRKYGNSSNKLMI 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + + +  +     G+   L  +E  +LEYLM ++ + +++ QI   ++  FD   + N
Sbjct: 130 GNLVLNTSEKSVTRGGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD-FDYEGDSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++  I  +RKK+  + G   + +KR LGY I
Sbjct: 189 IIDVLIKNIRKKIDVEGGKQIIYTKRGLGYVI 220


>gi|331271106|ref|YP_004385815.1| two component transcriptional (response) regulator [Clostridium
           botulinum BKT015925]
 gi|329127601|gb|AEB77543.1| Two component transcriptional (response) regulator [Clostridium
           botulinum BKT015925]
          Length = 230

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 13/151 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E   IIR     P++ +S     +  L  F  G DD + KP   +E+ AR+ +  RR  
Sbjct: 61  IEFCSIIRKKVSCPILFVSAKILEEDKLQAFAIGGDDYITKPFSLKELKARIESHLRR-- 118

Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               R ++  + + S G         D   +GE   L  +E  ++++LM N+    +K +
Sbjct: 119 --EERIKSKEVYILSSGNIILDAVAHDILCKGEKLKLTNKEYNMVKFLMLNKNIVFSKEK 176

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G+  E+  E V ES I  +RKK++N
Sbjct: 177 LLDNVWGMDSESYLETVTES-IKNIRKKIKN 206


>gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 237

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 12/175 (6%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L  +  ED  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 38  LDRALSEDFDAILLDLMLPDLNGLEIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETG-PIRVFSDGRDPEVQ----------GEV 146
            + KP    E+LAR+ A+ RR+K+  + ++   P +     +D  ++          G+ 
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVKIEKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKT 157

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L +RE  +L  L+ N+   V + Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 158 VDLTKREYNLLMTLIENKNNVVGRDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211


>gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
 gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
          Length = 252

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           R+  A +++P++ ++    ++  +     G DD V KP    E++AR+ AI RR    V 
Sbjct: 92  RLRNAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMDSVD 151

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       + +  D  +    G    L   E ++L YLM N G+ V+K QI   ++  +D
Sbjct: 152 DGILRIADLELDEDAYEVRRDGVELELSPTEFKLLRYLMINEGRVVSKMQILDHVWE-YD 210

Query: 183 EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              +  +VES+IS LR+KL  ++   D + ++R +GY +
Sbjct: 211 WEGDAAIVESYISYLRRKLAVHEDSKDLIHTRRGVGYML 249


>gi|218133928|ref|ZP_03462732.1| hypothetical protein BACPEC_01817 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991303|gb|EEC57309.1| hypothetical protein BACPEC_01817 [Bacteroides pectinophilus ATCC
           43243]
          Length = 240

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 79  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 138

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   +  +  P  + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 139 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD    ++ + +HI  +R K  +   + P+ +   LG    W
Sbjct: 198 FDNESNDSTIITHIKNIRAKFAD-YDYMPIKTVCSLGIGYKW 238


>gi|188534102|ref|YP_001907899.1| DNA-binding transcriptional regulator PhoP [Erwinia tasmaniensis
           Et1/99]
 gi|188029144|emb|CAO97016.1| Two-component response regulator of virulence determinants [Erwinia
           tasmaniensis Et1/99]
          Length = 222

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 2/149 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132
           P++ ++     Q  ++  ++G DD V KP H  E++AR+ A+ RR   +++      P +
Sbjct: 74  PILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMRRNCGLASQIITLQPFQ 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    R+  +   +  L   E  ILE L+ N GK V+K  +   +Y    E  E + ++ 
Sbjct: 134 IDLSRREVTIHERLLKLTAFEYTILETLIRNAGKVVSKDSLMLQLYP-DAELRESHTIDV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +LRKK++ +   + + + R LGY  D
Sbjct: 193 LMGRLRKKIQAEYAQEVITTVRGLGYRFD 221


>gi|167035384|ref|YP_001670615.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861872|gb|ABZ00280.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 223

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPI 131
           +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  +   R +  GP+
Sbjct: 73  LPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLGGERQQRCGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
               D R   +  +   L  RE+ +LE L+A  G+ ++K Q+ + ++GL DE    + +E
Sbjct: 133 VYDLDTRRFTLGADNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFGL-DEEASPDAIE 191

Query: 192 SHISKLRKKL 201
            +I +LRKKL
Sbjct: 192 IYIHRLRKKL 201


>gi|70725405|ref|YP_252319.1| hypothetical protein SH0404 [Staphylococcus haemolyticus JCSC1435]
 gi|68446129|dbj|BAE03713.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 222

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP++ IS        +     G DD + KP +    + ++ A+ RR   L VSN
Sbjct: 66  IRKTSNVPIMFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTVTKIQALLRRTYDLAVSN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N       ++  D      + E   L   E +IL  L  N GK V++T +    +   + 
Sbjct: 126 NEVTVKNCKLVVDEATLYHEDESVQLSFTELQILNMLFRNEGKYVSRTALIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL++    D +++K+ +GY +
Sbjct: 185 FIDDNTLAVNMTRLRKKLQSIGVVDLIETKKNVGYKV 221


>gi|223984939|ref|ZP_03635042.1| hypothetical protein HOLDEFILI_02344 [Holdemania filiformis DSM
           12042]
 gi|223963108|gb|EEF67517.1| hypothetical protein HOLDEFILI_02344 [Holdemania filiformis DSM
           12042]
          Length = 222

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 7/139 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--AAIYRRLKVSNN 124
           IR  S +P+I +S    + T ++    G DD V KP +  E+LAR+    I  +  +   
Sbjct: 67  IRKFSDIPIIIVSAKDLVLTKVELLRLGADDYVTKPFNLEELLARIERCLIRNQKTLPEM 126

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           +  +G + + +  +   +   +  L  +E +ILE LM    K  +K  ++ A++   +EA
Sbjct: 127 QIVSGDLVLDTQSKSVSIHDTILSLTAKEYQILELLMKYPNKVFSKQNLYEAVW---NEA 183

Query: 185 V--EENVVESHISKLRKKL 201
              + +V+ +HIS LRKKL
Sbjct: 184 FARDNDVMNTHISNLRKKL 202


>gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42]
 gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42]
          Length = 227

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 19/200 (9%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           K+G+ A F  DGV  EG+     E+W       D+  ++  L       + + R IR  S
Sbjct: 22  KEGFEAEFVHDGV--EGYQRFTEEDW-------DLVILDIMLPSMDG--VTICRKIRETS 70

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV------SNNR 125
            VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR +       S++ 
Sbjct: 71  SVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYRATGQAVKSDDL 130

Query: 126 AETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            ET    +    R+  + G+ V  L  +E  +L YL  N  +  ++ Q+   ++G +   
Sbjct: 131 IETACFSINKKTREVFLHGKPVENLTPKEFDLLFYLAQNPRQVFSREQLLEQVWG-YQFY 189

Query: 185 VEENVVESHISKLRKKLRNK 204
            +E  V+ HI +LRKKL ++
Sbjct: 190 GDERTVDVHIKRLRKKLSSE 209


>gi|326789239|ref|YP_004307060.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540003|gb|ADZ81862.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 219

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 1/136 (0%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           ++      P I ++   +++  +     G DD + KP    E+LARV A+ RR +   + 
Sbjct: 63  VLEQMKDTPTILLTAKSNVEDRVKGLVMGADDYIIKPFEMLELLARVEAVLRRTRKEEDV 122

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E   ++V    R   ++G++     +E  +LE L+ NR   +++ ++   I+G +D   
Sbjct: 123 FEVKEVKVEFGSRKIYLRGKLVDCTPKEYELLEVLIKNRNVALSREKLLEMIWG-YDYMG 181

Query: 186 EENVVESHISKLRKKL 201
           E   V+ HI +LRKKL
Sbjct: 182 ETRTVDVHIQRLRKKL 197


>gi|126657203|ref|ZP_01728369.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126621474|gb|EAZ92185.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 225

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 88/163 (53%), Gaps = 4/163 (2%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L + +RA+  + P++ ++   +++  +   D+G DD + KP    E+ ARV A+ RR 
Sbjct: 60  ISLCQQLRANGCKTPILMLTARDTIKDRVKGLDAGADDYLIKPFDLEELSARVRALLRRG 119

Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + S     + G + V     +   Q +V  L  +E R+LE+ + +  +  +++Q+   ++
Sbjct: 120 ETSLPPILSWGELCVDPSSCEVTYQQQVLSLSPKEYRLLEFFLRHPRRMFSRSQLLDHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            + D+  EE  V++HIS LR+KL+   L  D +++   LGY +
Sbjct: 180 AM-DQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRL 221


>gi|220929522|ref|YP_002506431.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999850|gb|ACL76451.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 238

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 6/130 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPL 149
           G DD + KP   RE++ARV A++RR+  +N         G I++    R+     ++  +
Sbjct: 99  GADDYITKPFSVRELIARVKALFRRVNTTNEPKIEVLSHGEIKIDCTRREVYKGDKLLEM 158

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFD 208
           P +E  +L+ L+ N+GK +++  +   I+G FD   E   V+ HI  LR+K+  N     
Sbjct: 159 PLKEFELLKMLVLNKGKVLSREHLLDKIWG-FDYYGETRTVDVHIRYLRQKIEDNDDNPT 217

Query: 209 PVDSKRFLGY 218
            +++ R +GY
Sbjct: 218 YIETVRGIGY 227


>gi|253577429|ref|ZP_04854745.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843229|gb|EES71261.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 228

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 4/162 (2%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119
           E+ R++R + + V +I ++    ++  +     G DD V KP    E+LAR+ A  R + 
Sbjct: 67  EVCRLLRKNGENVSIIMLTAKDEVEDRVKGLTIGADDYVVKPFSFEELLARIGARLRNQF 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    GP R+    ++     +V  L   E  +L+YL+ N G  ++KT I   ++G
Sbjct: 127 PALFGEVVIGPFRLDDRRKEIAYLDQVLELSPTEYELLKYLILNHGIVLSKTTILDKVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   EEN+VE +I  LR+KL ++     + + R  GY +D
Sbjct: 187 -YDFGGEENIVEVYIRSLREKLNDR-EHRLIRTLRGAGYRVD 226


>gi|222099537|ref|YP_002534105.1| Response regulator [Thermotoga neapolitana DSM 4359]
 gi|221571927|gb|ACM22739.1| Response regulator [Thermotoga neapolitana DSM 4359]
          Length = 220

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 6/143 (4%)

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+I+  H +  +I ++     ++ L  F++G DD V KP +   +LARV     R K
Sbjct: 60  ELCRMIKEEHPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPDILLARVKRFLERQK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  + G ++V + G    ++G+   LPRRE  IL +L+ N GK V + ++    +  
Sbjct: 120 --KNLYDFGELKVDATGATVYLKGKRIHLPRREFEILLFLVENAGKVVTREKLLETFW-- 175

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
            +E V    V++ I ++RK + +
Sbjct: 176 -EEPVSPRAVDTVIKRIRKAIED 197


>gi|254250133|ref|ZP_04943453.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124876634|gb|EAY66624.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 236

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR      RA+
Sbjct: 84  RRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVNRR---HAGRAQ 140

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           T    GP+R+        +  +  PL  +E  +L  LM   G  +++ Q    +Y  + E
Sbjct: 141 TTLAIGPLRLDPVKHLVWLDDDEVPLSPKEFVLLHELMREPGAVISREQFEERLYS-WGE 199

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 200 EIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 232


>gi|229553724|ref|ZP_04442449.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229312895|gb|EEN78868.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 237

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +L + +RA   + P++ ++   +L   +  F+ G DD + KP H  E++ R+ A+ +R 
Sbjct: 69  FDLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRT 128

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    GP  V  +  +  +  +   L  +E  +L YL+ N+   + K QIF  +
Sbjct: 129 GHFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G FD     +VVE ++S LRKKL+       + + R +GY
Sbjct: 189 WG-FDSDTAVSVVEVYMSNLRKKLKPMQADVWIKTIRNVGY 228


>gi|213691593|ref|YP_002322179.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523054|gb|ACJ51801.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457681|dbj|BAJ68302.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 243

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +     P++ ++     Q  +     G DD V KP    E++AR+ AI RR   +  
Sbjct: 71  RIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TRE 127

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + E  PI       +  D  D    G+   L   E ++L YLM N G+ ++K QI   ++
Sbjct: 128 QVEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR---------NKLGFDP-VDSKRFLGYSI 220
             +D   +  +VES+IS LRKK+           K    P +++KR +GY I
Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238


>gi|83592836|ref|YP_426588.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodospirillum rubrum ATCC 11170]
 gi|83575750|gb|ABC22301.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Rhodospirillum rubrum ATCC 11170]
          Length = 1483

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 23/201 (11%)

Query: 4    LIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
            L+DD A ++D   AL  DDG+ +E + S E F    +    E    I+A+L G  G  +L
Sbjct: 1279 LVDDDASLRDSLRALLEDDGLKVEDYESSEAFLAAYRPGGGEACLLIDAYLPGMSGLDLL 1338

Query: 62   ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            E  R+ + +  +P I I+ Y  +   +    +G  D + KP+   E+L    +I R L+ 
Sbjct: 1339 E--RLKKENRLLPAIVITGYSEVAMAVQAMKAGASDFIEKPVGRTELL---ISIDRALEQ 1393

Query: 122  SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR-GKRVAKTQIFSAIYGL 180
                  +G +R++ D      +  +  L  R+R I+E ++A +  K +A           
Sbjct: 1394 HREHGNSGKMRLWRDA----AKARLASLSARQREIMEMVLAGQPSKNIAA---------- 1439

Query: 181  FDEAVEENVVESHISKLRKKL 201
             D  + +  VESH + + KKL
Sbjct: 1440 -DLGISQRTVESHRALIMKKL 1459


>gi|24112549|ref|NP_707059.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 2a
           str. 301]
 gi|26247378|ref|NP_753418.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           CFT073]
 gi|30062677|ref|NP_836848.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 2a
           str. 2457T]
 gi|74311689|ref|YP_310108.1| DNA-binding transcriptional regulator PhoP [Shigella sonnei Ss046]
 gi|82544383|ref|YP_408330.1| DNA-binding transcriptional regulator PhoP [Shigella boydii Sb227]
 gi|82777259|ref|YP_403608.1| DNA-binding transcriptional regulator PhoP [Shigella dysenteriae
           Sd197]
 gi|91210286|ref|YP_540272.1| DNA-binding transcriptional regulator PhoP [Escherichia coli UTI89]
 gi|110641307|ref|YP_669037.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 536]
 gi|110805158|ref|YP_688678.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 5
           str. 8401]
 gi|117623315|ref|YP_852228.1| DNA-binding transcriptional regulator PhoP [Escherichia coli APEC
           O1]
 gi|157159002|ref|YP_001462399.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           E24377A]
 gi|170681232|ref|YP_001744047.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           SMS-3-5]
 gi|187730593|ref|YP_001879938.1| DNA-binding transcriptional regulator PhoP [Shigella boydii CDC
           3083-94]
 gi|191168321|ref|ZP_03030113.1| DNA-binding response regulator PhoP [Escherichia coli B7A]
 gi|191173098|ref|ZP_03034631.1| DNA-binding response regulator PhoP [Escherichia coli F11]
 gi|193066242|ref|ZP_03047294.1| DNA-binding response regulator PhoP [Escherichia coli E22]
 gi|194429552|ref|ZP_03062073.1| DNA-binding response regulator PhoP [Escherichia coli B171]
 gi|194433627|ref|ZP_03065903.1| DNA-binding response regulator PhoP [Shigella dysenteriae 1012]
 gi|194437080|ref|ZP_03069179.1| DNA-binding response regulator PhoP [Escherichia coli 101-1]
 gi|209918387|ref|YP_002292471.1| DNA-binding transcriptional regulator PhoP [Escherichia coli SE11]
 gi|218553708|ref|YP_002386621.1| DNA-binding transcriptional regulator PhoP [Escherichia coli IAI1]
 gi|218558012|ref|YP_002390925.1| DNA-binding transcriptional regulator PhoP [Escherichia coli S88]
 gi|218689083|ref|YP_002397295.1| DNA-binding transcriptional regulator PhoP [Escherichia coli ED1a]
 gi|218694664|ref|YP_002402331.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 55989]
 gi|218700347|ref|YP_002407976.1| DNA-binding transcriptional regulator PhoP [Escherichia coli IAI39]
 gi|218704604|ref|YP_002412123.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           UMN026]
 gi|227886513|ref|ZP_04004318.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 83972]
 gi|237706884|ref|ZP_04537365.1| virulence transcriptional regulatory protein phoP [Escherichia sp.
           3_2_53FAA]
 gi|253773846|ref|YP_003036677.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161237|ref|YP_003044345.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B str.
           REL606]
 gi|256018614|ref|ZP_05432479.1| DNA-binding transcriptional regulator PhoP [Shigella sp. D9]
 gi|260843446|ref|YP_003221224.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O103:H2 str. 12009]
 gi|260854812|ref|YP_003228703.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O26:H11 str. 11368]
 gi|260867559|ref|YP_003233961.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O111:H- str. 11128]
 gi|293409496|ref|ZP_06653072.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B354]
 gi|293414421|ref|ZP_06657070.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B185]
 gi|293433418|ref|ZP_06661846.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B088]
 gi|298380261|ref|ZP_06989866.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           FVEC1302]
 gi|300816833|ref|ZP_07097053.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821086|ref|ZP_07101235.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300896841|ref|ZP_07115336.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300922660|ref|ZP_07138757.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300928312|ref|ZP_07143848.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300938702|ref|ZP_07153426.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300975596|ref|ZP_07173075.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300982385|ref|ZP_07176083.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301024584|ref|ZP_07188256.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301051080|ref|ZP_07197914.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|301328495|ref|ZP_07221561.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|306814020|ref|ZP_07448193.1| DNA-binding transcriptional regulator PhoP [Escherichia coli NC101]
 gi|307310093|ref|ZP_07589743.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309788200|ref|ZP_07682806.1| transcriptional regulatory protein phoP [Shigella dysenteriae 1617]
 gi|309796524|ref|ZP_07690931.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331646389|ref|ZP_08347492.1| transcriptional regulatory protein PhoP [Escherichia coli M605]
 gi|331652181|ref|ZP_08353200.1| transcriptional regulatory protein PhoP [Escherichia coli M718]
 gi|331657194|ref|ZP_08358156.1| transcriptional regulatory protein PhoP [Escherichia coli TA206]
 gi|331662541|ref|ZP_08363464.1| transcriptional regulatory protein PhoP [Escherichia coli TA143]
 gi|331667531|ref|ZP_08368395.1| transcriptional regulatory protein PhoP [Escherichia coli TA271]
 gi|331682636|ref|ZP_08383255.1| transcriptional regulatory protein PhoP [Escherichia coli H299]
 gi|332279682|ref|ZP_08392095.1| DNA-binding response regulator in two-component system response
           regulatory system with PhoQ [Shigella sp. D9]
 gi|81724595|sp|Q83RR0|PHOP_SHIFL RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|81741528|sp|Q8CXZ9|PHOP_ECOL6 RecName: Full=Transcriptional regulatory protein phoP
 gi|26107779|gb|AAN79978.1|AE016759_252 Transcriptional Regulatory protein phoP [Escherichia coli CFT073]
 gi|24051444|gb|AAN42766.1| transcriptional regulatory protein [Shigella flexneri 2a str. 301]
 gi|30040925|gb|AAP16655.1| transcriptional regulatory protein [Shigella flexneri 2a str.
           2457T]
 gi|73855166|gb|AAZ87873.1| transcriptional regulatory protein [Shigella sonnei Ss046]
 gi|81241407|gb|ABB62117.1| transcriptional regulatory protein [Shigella dysenteriae Sd197]
 gi|81245794|gb|ABB66502.1| transcriptional regulatory protein [Shigella boydii Sb227]
 gi|91071860|gb|ABE06741.1| transcriptional regulatory protein [Escherichia coli UTI89]
 gi|110342899|gb|ABG69136.1| transcriptional regulatory protein PhoP [Escherichia coli 536]
 gi|110614706|gb|ABF03373.1| transcriptional regulatory protein [Shigella flexneri 5 str. 8401]
 gi|115512439|gb|ABJ00514.1| transcriptional regulatory protein PhoP [Escherichia coli APEC O1]
 gi|157081032|gb|ABV20740.1| DNA-binding response regulator PhoP [Escherichia coli E24377A]
 gi|170518950|gb|ACB17128.1| DNA-binding response regulator PhoP [Escherichia coli SMS-3-5]
 gi|187427585|gb|ACD06859.1| DNA-binding response regulator PhoP [Shigella boydii CDC 3083-94]
 gi|190901616|gb|EDV61373.1| DNA-binding response regulator PhoP [Escherichia coli B7A]
 gi|190906643|gb|EDV66249.1| DNA-binding response regulator PhoP [Escherichia coli F11]
 gi|192926091|gb|EDV80733.1| DNA-binding response regulator PhoP [Escherichia coli E22]
 gi|194412426|gb|EDX28727.1| DNA-binding response regulator PhoP [Escherichia coli B171]
 gi|194418056|gb|EDX34149.1| DNA-binding response regulator PhoP [Shigella dysenteriae 1012]
 gi|194424063|gb|EDX40051.1| DNA-binding response regulator PhoP [Escherichia coli 101-1]
 gi|195182817|dbj|BAG66393.1| two-component response regulator protein [Escherichia coli O111:H-]
 gi|209911646|dbj|BAG76720.1| two-component transcriptional regulator [Escherichia coli SE11]
 gi|218351396|emb|CAU97102.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli 55989]
 gi|218360476|emb|CAQ98030.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli IAI1]
 gi|218364781|emb|CAR02471.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli S88]
 gi|218370333|emb|CAR18136.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli IAI39]
 gi|218426647|emb|CAR07475.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli ED1a]
 gi|218431701|emb|CAR12583.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli UMN026]
 gi|222032882|emb|CAP75622.1| Transcriptional regulatory protein phoP [Escherichia coli LF82]
 gi|226898094|gb|EEH84353.1| virulence transcriptional regulatory protein phoP [Escherichia sp.
           3_2_53FAA]
 gi|227836717|gb|EEJ47183.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 83972]
 gi|242376932|emb|CAQ31653.1| phoP [Escherichia coli BL21(DE3)]
 gi|253324890|gb|ACT29492.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973138|gb|ACT38809.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli B str. REL606]
 gi|253977352|gb|ACT43022.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli BL21(DE3)]
 gi|257753461|dbj|BAI24963.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O26:H11 str. 11368]
 gi|257758593|dbj|BAI30090.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O103:H2 str. 12009]
 gi|257763915|dbj|BAI35410.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O111:H- str. 11128]
 gi|281178240|dbj|BAI54570.1| two-component transcriptional regulator [Escherichia coli SE15]
 gi|281600563|gb|ADA73547.1| Virulence transcriptional regulatory protein phoP [Shigella
           flexneri 2002017]
 gi|291324237|gb|EFE63659.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B088]
 gi|291434479|gb|EFF07452.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B185]
 gi|291469964|gb|EFF12448.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B354]
 gi|294490321|gb|ADE89077.1| DNA-binding response regulator PhoP [Escherichia coli IHE3034]
 gi|298279959|gb|EFI21467.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           FVEC1302]
 gi|300297252|gb|EFJ53637.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300307222|gb|EFJ61742.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300359323|gb|EFJ75193.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300396509|gb|EFJ80047.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300410259|gb|EFJ93797.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300421009|gb|EFK04320.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300456347|gb|EFK19840.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300463698|gb|EFK27191.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300526385|gb|EFK47454.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300530607|gb|EFK51669.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300845102|gb|EFK72862.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|305852657|gb|EFM53105.1| DNA-binding transcriptional regulator PhoP [Escherichia coli NC101]
 gi|306909811|gb|EFN40305.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307553131|gb|ADN45906.1| DNA-binding response regulator PhoP [Escherichia coli ABU 83972]
 gi|307627398|gb|ADN71702.1| DNA-binding transcriptional regulator PhoP [Escherichia coli UM146]
 gi|308119836|gb|EFO57098.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|308924052|gb|EFP69553.1| transcriptional regulatory protein phoP [Shigella dysenteriae 1617]
 gi|312945692|gb|ADR26519.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313650392|gb|EFS14799.1| transcriptional regulatory protein phoP [Shigella flexneri 2a str.
           2457T]
 gi|315060407|gb|ADT74734.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli W]
 gi|315287473|gb|EFU46884.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315293102|gb|EFU52454.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315296599|gb|EFU55894.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320175636|gb|EFW50728.1| Transcriptional regulatory protein PhoP [Shigella dysenteriae CDC
           74-1112]
 gi|320179170|gb|EFW54128.1| Transcriptional regulatory protein PhoP [Shigella boydii ATCC 9905]
 gi|320184387|gb|EFW59198.1| Transcriptional regulatory protein PhoP [Shigella flexneri CDC
           796-83]
 gi|320195867|gb|EFW70492.1| Transcriptional regulatory protein PhoP [Escherichia coli
           WV_060327]
 gi|320201026|gb|EFW75610.1| Transcriptional regulatory protein PhoP [Escherichia coli EC4100B]
 gi|323153124|gb|EFZ39389.1| transcriptional regulatory protein phoP [Escherichia coli EPECa14]
 gi|323163674|gb|EFZ49496.1| transcriptional regulatory protein phoP [Escherichia coli E128010]
 gi|323165638|gb|EFZ51425.1| transcriptional regulatory protein phoP [Shigella sonnei 53G]
 gi|323172493|gb|EFZ58130.1| transcriptional regulatory protein phoP [Escherichia coli LT-68]
 gi|323179334|gb|EFZ64904.1| transcriptional regulatory protein phoP [Escherichia coli 1180]
 gi|323185686|gb|EFZ71047.1| transcriptional regulatory protein phoP [Escherichia coli 1357]
 gi|323187618|gb|EFZ72925.1| transcriptional regulatory protein phoP [Escherichia coli RN587/1]
 gi|323379033|gb|ADX51301.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323947566|gb|EGB43570.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323953183|gb|EGB49049.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323957956|gb|EGB53668.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323962729|gb|EGB58307.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323967069|gb|EGB62495.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323973280|gb|EGB68469.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323976499|gb|EGB71587.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324005953|gb|EGB75172.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324013223|gb|EGB82442.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|324017498|gb|EGB86717.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324117299|gb|EGC11206.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|327253834|gb|EGE65463.1| transcriptional regulatory protein phoP [Escherichia coli STEC_7v]
 gi|331045141|gb|EGI17268.1| transcriptional regulatory protein PhoP [Escherichia coli M605]
 gi|331050459|gb|EGI22517.1| transcriptional regulatory protein PhoP [Escherichia coli M718]
 gi|331055442|gb|EGI27451.1| transcriptional regulatory protein PhoP [Escherichia coli TA206]
 gi|331060963|gb|EGI32927.1| transcriptional regulatory protein PhoP [Escherichia coli TA143]
 gi|331065116|gb|EGI37011.1| transcriptional regulatory protein PhoP [Escherichia coli TA271]
 gi|331080267|gb|EGI51446.1| transcriptional regulatory protein PhoP [Escherichia coli H299]
 gi|332089268|gb|EGI94374.1| transcriptional regulatory protein phoP [Shigella boydii 5216-82]
 gi|332092880|gb|EGI97948.1| transcriptional regulatory protein phoP [Shigella dysenteriae
           155-74]
 gi|332094417|gb|EGI99466.1| transcriptional regulatory protein phoP [Shigella boydii 3594-74]
 gi|332102034|gb|EGJ05380.1| DNA-binding response regulator in two-component system response
           regulatory system with PhoQ [Shigella sp. D9]
 gi|332758319|gb|EGJ88642.1| transcriptional regulatory protein phoP [Shigella flexneri 4343-70]
 gi|332767375|gb|EGJ97569.1| response regulator [Shigella flexneri 2930-71]
 gi|333004967|gb|EGK24487.1| transcriptional regulatory protein phoP [Shigella flexneri VA-6]
 gi|333005526|gb|EGK25044.1| transcriptional regulatory protein phoP [Shigella flexneri K-218]
 gi|333008362|gb|EGK27836.1| transcriptional regulatory protein phoP [Shigella flexneri K-272]
 gi|333019381|gb|EGK38664.1| transcriptional regulatory protein phoP [Shigella flexneri K-304]
 gi|333019849|gb|EGK39121.1| transcriptional regulatory protein phoP [Shigella flexneri K-227]
          Length = 223

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 105/218 (48%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R++   +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E + ++  + +LRKK++ +   + + + R  GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218


>gi|327398349|ref|YP_004339218.1| winged helix family two component transcriptional regulator [Hippea
           maritima DSM 10411]
 gi|327180978|gb|AEA33159.1| two component transcriptional regulator, winged helix family
           [Hippea maritima DSM 10411]
          Length = 222

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 96/188 (51%), Gaps = 7/188 (3%)

Query: 37  WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           +L  +++ D+  I+  L G  G  ++++ R   A  ++P++ +S   S+   ++    G 
Sbjct: 38  YLAVNSKYDLLIIDRMLPGIDGLSIVKMLR--AADKRMPILILSALGSVDEKVEGLRIGA 95

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRER 154
           DD + KP    E+LAR+  + RR K S  +  +   +++  +        +   L   E 
Sbjct: 96  DDYLPKPYAFSELLARIEVLLRRNKESQAKFLQVADLKINLENYTVTRAAKKIELKPTEF 155

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           ++L YL+ +RG+ + +T +   I+G  FD   + N+V+ HIS+LR K+      + + + 
Sbjct: 156 KLLVYLVRHRGQVITRTMLLENIWGYNFDP--QTNIVDVHISRLRSKIDRGFDKELIKTI 213

Query: 214 RFLGYSID 221
           R +GY I+
Sbjct: 214 RGIGYKIE 221


>gi|325264454|ref|ZP_08131184.1| DNA-binding response regulator DltR [Clostridium sp. D5]
 gi|324030116|gb|EGB91401.1| DNA-binding response regulator DltR [Clostridium sp. D5]
          Length = 227

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 2/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           R   + P++ ++    ++  +   D G DD + KP    E+LAR+ A+ RR  + + +  
Sbjct: 71  REGYRTPILLLTAKAEVEDRIQGLDLGADDYLPKPFAMGELLARIRAMLRRREEFTPDII 130

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G I +     +    G+ F L + E R++E L+ N+G  ++  ++   ++G   EA E
Sbjct: 131 TCGNIYLNQKSYELSGNGQTFVLAKLEYRLMETLLLNQGMYLSSEELLVKVWGYETEA-E 189

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              V  +IS LRK+L        + +KR +GY+++
Sbjct: 190 LGTVWVYISYLRKRLAALGANVEIKAKRNIGYTLE 224


>gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281427|gb|ABR89837.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 233

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +RA +S++P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRG 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 120 AGGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKK+  ++G   + + R LGY ++
Sbjct: 180 E-WSEEVSNNAIEVYVHRLRKKI--EIGGLRIATVRGLGYCLE 219


>gi|299534686|ref|ZP_07048016.1| putative lantibiotic biosynthesis regulatory protein
           [Lysinibacillus fusiformis ZC1]
 gi|298729774|gb|EFI70319.1| putative lantibiotic biosynthesis regulatory protein
           [Lysinibacillus fusiformis ZC1]
          Length = 220

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKV 121
           L R IR     P++ ++     +  +     G DD + KP    E+ ARV A I R  + 
Sbjct: 62  LCRQIRHAVDCPILFLTAKTLEEDIMFGLGLGADDYLIKPFSIGELRARVNAHIRRENRE 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N    G +     G++  VQ E  PL + E  I E+L  +RG+  +K QI+  I+G F
Sbjct: 122 KRNVLYHGKVHFNLSGKELFVQNERIPLTKSEYEICEFLARHRGQVFSKEQIYETIFG-F 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D   +   +  HI  +R KL +    + +D+   +GY
Sbjct: 181 DGKSDSTAITEHIKNIRSKL-HAFDIEVIDTVWGIGY 216


>gi|255280222|ref|ZP_05344777.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255269313|gb|EET62518.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 225

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 9/145 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  QVCREIRGVSNVPIIMLTARADERDELLGFELGVDEYISKPFSPKILVARVEAILRR--- 121

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           SN  A       G I +       +  G+   L  +E  +L Y M N+G  +++ +I ++
Sbjct: 122 SNALAPDKIMTAGKISLDKAAHVVKADGQSVDLSYKEFELLSYFMENQGIALSREKILNS 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++  +D   +   +++H+ KLR KL
Sbjct: 182 VWN-YDYFGDARTIDTHVKKLRSKL 205


>gi|118479956|ref|YP_897107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118419181|gb|ABK87600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 249

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 11/165 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 83  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 142

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 143 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 202

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY  +
Sbjct: 203 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGYRFN 244


>gi|84494699|ref|ZP_00993818.1| TcrA [Janibacter sp. HTCC2649]
 gi|84384192|gb|EAQ00072.1| TcrA [Janibacter sp. HTCC2649]
          Length = 231

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 100/217 (46%), Gaps = 18/217 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           R L  +G++     DGV+          +WL +    DV  ++  L G+ G  VL   R 
Sbjct: 18  RGLTAEGFVVDVAHDGVT---------GQWLATENPYDVIVLDIMLPGRNGYDVLRNLRA 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-R 125
           ++  +   ++   D    QT  D F+ G DD + KP     ++AR+ A+ RR   +    
Sbjct: 69  LKVWAPAMMLTAKDGEYDQT--DAFELGADDYLTKPFSFVVLVARLRALVRRGAPARPVD 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G + +  + R     G    L  +E  +L++LM +    ++K +I   ++   D+A 
Sbjct: 127 LRVGGLLLDPNKRTVSRNGHAITLTAKEFSVLQFLMRHPEVVLSKAEILDNVW---DQAF 183

Query: 186 E--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +N+VE ++  LR+K+    G   +++ R +GY +
Sbjct: 184 DGSDNIVEVYVGYLRRKIDQAFGVTSLETVRGMGYRL 220


>gi|325265320|ref|ZP_08132045.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029499|gb|EGB90789.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 234

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           ++ R  S +P+I ++   S    L  ++ G DD + KP   R +LA+  A+ RR      
Sbjct: 77  KMAREMSSLPIIMLTARSSEDDKLKGYEYGADDYMTKPFSPRVLLAKANALLRRSSSGKT 136

Query: 125 RA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            +   G I +        V G+   L  +E  +L + + N G+  ++ Q+ + I+G +D 
Sbjct: 137 DSLHAGKITLIPASHKVFVDGQEVTLTHKEYELLHFFLTNSGQIFSRDQLLNRIWG-YDF 195

Query: 184 AVEENVVESHISKLRKKL 201
           A     V++HI  LR+KL
Sbjct: 196 AGTTRTVDTHIKTLRQKL 213


>gi|296444337|ref|ZP_06886302.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296257984|gb|EFH05046.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 227

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ V  LP I R    + ++ ++   ++   ++  D+G DD V KP    E++ARV A  
Sbjct: 57  GDAVSVLPAIRRLQPSIRIVMMTARNAVDDRIEGLDAGADDYVTKPFDANELVARVRACL 116

Query: 117 RRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RRL           G I    + RD  V G      +RER +L+ L+ N G+ V + ++ 
Sbjct: 117 RRLGGGEAPPPIAVGGIVFNPETRDVSVNGANVLFHKRERALLDILLLNAGRAVLRDRLL 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + IYG  D+ V+ N +   +S+LR++L +      + + R +GY
Sbjct: 177 AEIYGFADD-VQANALSMLVSRLRRRLLDLDAGVEIHTARDVGY 219


>gi|146311299|ref|YP_001176373.1| DNA-binding transcriptional regulator PhoP [Enterobacter sp. 638]
 gi|145318175|gb|ABP60322.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 224

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E  L L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ 
Sbjct: 58  EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARIQALM 117

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +  
Sbjct: 118 RRNSGLASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNSGKVVSKDSLML 177

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y    E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 178 QLYP-DAELRESHTIDVLMGRLRKKIQAQHPHDVITTVRGQGY 219


>gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 12/148 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R +RA S VP+I ++   ++   +   +SG DD + KP    E+LAR+ A+ RR  
Sbjct: 67  FEVCRRLRAGSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRR-- 124

Query: 121 VSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               R E GP+ +  +G       R+  + G    L  +E  +LE  M + G+ + +  I
Sbjct: 125 -HVARTE-GPVVLQVNGLEMNTASREVTIAGRAVQLTAKEYELLELFMRHPGQVLTRDVI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  ++G +D   E N++E ++  LR+KL
Sbjct: 183 YDRVWG-YDFGGESNIIEVYVRYLRQKL 209


>gi|37958845|gb|AAP51109.1| putative two-component response regulator [uncultured bacterium]
          Length = 228

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 12/152 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----T 128
            P++ ++    + + +   D G DD V KP    E+ AR+ A+ RR   S  RA      
Sbjct: 79  TPVLIMTARDQVASRIAGLDMGADDYVVKPFDSNELAARMRALQRR---SRGRAHPVLSC 135

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + V +  R     G V  L  RE  +L  L+  R + +++TQI   +Y  FD+A++ N
Sbjct: 136 GELEVDTAARQVRRAGVVVELSVREYALLLALVEVRPRVLSRTQIEERLYS-FDQALDSN 194

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E H+  LR+KL N    D + + R +GY I
Sbjct: 195 AIEVHVHHLRRKLGN----DIIRTMRGVGYFI 222


>gi|322373103|ref|ZP_08047639.1| DNA-binding response regulator CiaR [Streptococcus sp. C150]
 gi|321278145|gb|EFX55214.1| DNA-binding response regulator CiaR [Streptococcus sp. C150]
          Length = 224

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K   N    G +RV        V+ +   L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFDQNTLSFGDVRVNLSTNSTFVEDKEVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + K+QIF  ++G FD     +VVE ++SK+RKKL+       
Sbjct: 151 LGKEFDLLVYFLQNQNVILPKSQIFDRLWG-FDSDTTVSVVEVYVSKIRKKLKGTDFAAN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|316941814|gb|ADU75848.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 223

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  SQVP+I IS        +   + G DD + KP     ++A+V A+ RR     +  
Sbjct: 67  IRKVSQVPIIFISSASDNMNIVMAINMGADDFIAKPFDLTVLVAKVQALLRRTYNFTSGT 126

Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +     G I   SD      +G    L + E RIL+ L+  RGK V++  +   ++   D
Sbjct: 127 DILEHKGVILNLSDCT-LVYKGNKLDLTKNEHRILQVLLEQRGKVVSRDTLMYRLWET-D 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + V+EN +  +I++LRKKL      + + +K+ LGY ++
Sbjct: 185 DFVDENTLTVNIARLRKKLAGVGIEEFIITKKGLGYMVE 223


>gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 229

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 16/208 (7%)

Query: 23  GVSLEGF------NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPL 75
           G++ EGF      + LE   W  S    DV  ++  L   G    E+ R +RA  +  P+
Sbjct: 19  GLTEEGFAVDIVADGLE-AVWQASEIAYDVIVLDLML--PGLDGFEVCRRLRAAGRWAPV 75

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIR 132
           + +S    +   +   D G DD + KP    E+ AR+ A+ RR   ++ R    +   +R
Sbjct: 76  LMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRR--GTHERPVVLDVDGLR 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +   GR     G    L  +E  +LEYLM + G+ +++T I   ++  F      NVV+ 
Sbjct: 134 LDPAGRTASRDGTALDLSPKEFALLEYLMRHPGEVLSRTAILEHVWD-FAYDGTSNVVDQ 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +I+ LR+K+    G   +++ R  GY +
Sbjct: 193 YIAYLRRKIDRPFGISQLETVRGAGYRL 220


>gi|281180069|dbj|BAI56399.1| two-component response regulator [Escherichia coli SE15]
          Length = 219

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELLRGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|153940586|ref|YP_001390235.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936482|gb|ABS41980.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318329|gb|ADF98706.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 225

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 26/174 (14%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL +I+R    +P+I ++        +   D G DD + KP   RE+++R+ ++ RR   
Sbjct: 61  ELCKIVREKEDIPIIFLTACDDEVNVVMGLDMGADDYIIKPFRIRELISRIKSVLRRYQK 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L++++ R  T   +V+ + ++         L   E R+L  L  N+G+ +++ 
Sbjct: 121 GINSKIILELNDIRINTLDAKVYKNDKE-------IVLTALEYRLLLILANNQGQVLSRN 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
           Q+   I+ +  + V +N +  +I ++R+KL N    DP     + + R +GY +
Sbjct: 174 QLLQGIWDVAGDFVNDNTLTVYIKRIREKLEN----DPQKPVIIKTVRGMGYKV 223


>gi|316936256|ref|YP_004111238.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603970|gb|ADU46505.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 237

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA     Q+P+I ++        +    +G DD + KP    E+LARV  + R
Sbjct: 62  IELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   +  R  T    G + +  D R     G    L   E R+LE+ + + G+  ++ Q+
Sbjct: 122 R--AAPERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 180 LDGVWG-RDIYIDERTVDVHIGRLRKLLNIGREQDPIRTVRGAGYALD 226


>gi|258539435|ref|YP_003173934.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|257151111|emb|CAR90083.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 224

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 11/158 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE VL     IR  SQVP++ ++       T+     G +D + KP    E+LAR+    
Sbjct: 59  GESVLT---TIRKTSQVPVLVLTAIQEKAKTVALLQQGANDYLTKPFDIDELLARIQVQL 115

Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R++     ++N++ + G I++        V  +   LP++E  +L  +M +  +   K+Q
Sbjct: 116 RQVSGQPLMTNDQLKVGEIQLDPKRHVVTVNQQTLTLPKKEYDMLALMMRDPHQVFDKSQ 175

Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           ++  ++G  F  A  +N +  HIS LR K+ N+L  DP
Sbjct: 176 LYEHVWGEPFLNA--DNTLNVHISNLRTKI-NELAHDP 210


>gi|256395907|ref|YP_003117471.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256362133|gb|ACU75630.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 230

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 13/158 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           +R  + VP++ +S     Q  +   D+G DD V KP    E+LAR+ A+ RR + +N   
Sbjct: 67  LRGWTTVPIVVLSGRTDPQEKIHALDAGADDFVTKPFAMEELLARLRAVIRRHQQANAGA 126

Query: 124 NRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             AET  +R+ S   D         G+   L R E  +LE L+ + G+ V+ +++ + ++
Sbjct: 127 TGAETSSVRLGSCDIDLVAHSVARGGDPVRLTRTEWALLEVLLRHPGQLVSTSRLLADVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           G      E   +  H+++LR+KL +    DP + +  +
Sbjct: 187 G-NSHTGEAGYLRFHMARLRRKLED----DPQNPRHLM 219


>gi|228899978|ref|ZP_04064216.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228859664|gb|EEN04086.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 218

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAVLRRYT 117

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + E   GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++
Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D A     V++H+  +R KL
Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199


>gi|75910544|ref|YP_324840.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704269|gb|ABA23945.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 236

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 7/151 (4%)

Query: 57  GEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  LE+ + +R   ++ P++ ++   +L   +   D+G DD + KP   RE+LARV A+
Sbjct: 62  GKTGLEICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRAL 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAK 170
            RR       A  G + V     D E      QG V  L ++E ++L+Y M + G+ +  
Sbjct: 122 LRRSSSQTYEATPGRLTVADLELDCENQVAYRQGRVIELSQKESQLLQYFMEHTGQLLTH 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            QI   ++   +E    NV+ + I  LR+K+
Sbjct: 182 AQILQHLWE-DNEPPNSNVIAALIRLLRRKI 211


>gi|89092214|ref|ZP_01165168.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanospirillum sp. MED92]
 gi|89083302|gb|EAR62520.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanospirillum sp. MED92]
          Length = 231

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 113/234 (48%), Gaps = 25/234 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGKG 57
           +++DD A +++  IA+     + + G+  LE E   Q+       + D+  ++  +   G
Sbjct: 8   LIVDDEAPIRE-MIAV----ALEMAGYQCLEAENANQAHGLIVDDKPDMVLLDWMM--PG 60

Query: 58  EKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              +E  R +R     + +P+I ++        +   ++GVDD + KP   RE++AR+ A
Sbjct: 61  ASGIEFARRLRKDETTADIPIIMLTAKGDEDNKIKGLEAGVDDYITKPFSPRELVARLKA 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDP---EVQGEVFP--LPRRERRILEYLMANRGKRVA 169
           + RR   +  +    P+ V     DP    V  ++ P  L   E R+L++ M ++ +  +
Sbjct: 121 VLRR---TTPKGIEEPVTVDGLTLDPISHRVTSDLNPIELGPTEFRLLQFFMTHQDRAYS 177

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++Q+   ++G  +  VEE  V+ HI +LRK L ++  +  V + R  GY    N
Sbjct: 178 RSQLLDMVWG-GNVYVEERTVDVHIRRLRKALGDRHDY-LVQTVRGTGYRFSSN 229


>gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 237

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 12/175 (6%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L  +  ED  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 38  LDRALSEDFDAILLDLMLPDLNGLEIARRVRQSKATPIIMMTARDSVIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETG-PIRVFSDGRDPEVQ----------GEV 146
            + KP    E+LAR+ A+ RR+K+  + ++   P +     +D  ++          G+ 
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVKIEKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKT 157

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L +RE  +L  L+ N+   V + Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 158 VDLTKREYNLLMTLIENKNNVVGRDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211


>gi|256004111|ref|ZP_05429095.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|255991859|gb|EEU01957.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
          Length = 213

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  SQVP+I IS        +   + G DD + KP     ++A+V A+ RR     +  
Sbjct: 57  IRKVSQVPIIFISSASDNMNIVMAINMGADDFIAKPFDLTVLVAKVQALLRRTYNFTSGT 116

Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +     G I   SD      +G    L + E RIL+ L+  RGK V++  +   ++   D
Sbjct: 117 DILEHKGVILNLSDCT-LVYKGNKLDLTKNEHRILQVLLEQRGKVVSRDTLMYRLWET-D 174

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + V+EN +  +I++LRKKL      + + +K+ LGY ++
Sbjct: 175 DFVDENTLTVNIARLRKKLAGVGIEEFIITKKGLGYMVE 213


>gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 241

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 9/143 (6%)

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA    +P++ ++    ++  ++   +G DD V KP    E++AR+ AI RR K  +
Sbjct: 73  RKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK--H 130

Query: 124 NRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +E   +RV     D  +      G++  L   E ++L YLM N G+ V+K+QI   ++
Sbjct: 131 GSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
             +D   +  +VES+IS LR+KL
Sbjct: 191 E-YDWEGDAAIVESYISYLRRKL 212


>gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 235

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 20/217 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 23  LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 72  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 131

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI + S+      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 132 NTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 190

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
              +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 191 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGY 227


>gi|242372530|ref|ZP_04818104.1| KDP operon transcriptional regulator [Staphylococcus epidermidis
           M23864:W1]
 gi|242349747|gb|EES41348.1| KDP operon transcriptional regulator [Staphylococcus epidermidis
           M23864:W1]
          Length = 232

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYR 117
           L L + +R     P+I IS     +T +   D G +D + KP +  E+ AR+     + R
Sbjct: 62  LSLIQQLRECVDTPIIVISARTEEETIVKALDCGANDYMTKPFNIDELQARIRVALRVSR 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++    N  E GP+ +  +G+   + G+   L   E ++LE L  + GK +    +  ++
Sbjct: 122 KIDTEQNNFENGPLTIDFNGKSVYIMGQSIHLTPNEFQLLEILSRHVGKVLTYQILLKSL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G  ++  E   +  H++ LRKKL      D +D K  + +
Sbjct: 182 FGYVNKC-EMASLRVHMASLRKKLNYSENIDGMDKKLIITH 221


>gi|241896109|ref|ZP_04783405.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870623|gb|EER74374.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 229

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R     P+I ++   S+   +   D G DD V KP    E+LARV A+ RR+ 
Sbjct: 61  LEVARRLREEKNTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRRID 120

Query: 121 VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +      T         + V  + R      E+  L +RE  +L  LM N     ++ ++
Sbjct: 121 IETEEHSTHQSVVRYRDLTVEKENRIARRGNEIINLTKREYELLLILMENINVVQSREEL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G +D  +E NVV+ +I  LR K+
Sbjct: 181 LKKVWG-YDSEIETNVVDVYIRYLRNKI 207


>gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 234

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 20/217 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 22  LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 71  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 130

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI + S+      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 131 NTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
              +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGY 226


>gi|169826346|ref|YP_001696504.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990834|gb|ACA38374.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
          Length = 233

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + VL D+RA+ +   I L  +   S+   N++E  +    +   D   ++  L  G G  
Sbjct: 6   ILVLEDERAIAEMIDIILRKEGMTSITLCNTIEAAKSEIYAKTFDFYLLDIMLPDGSG-- 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115
            LE+  +IR  S  P+  ++   S    L  F +G DD + KP +  E++ARV    A  
Sbjct: 64  -LEVANLIREKSDAPIFYLTAKSSDADKLRGFMNGADDYITKPFNPLELVARVKVQLARY 122

Query: 116 YRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++ +V+ N   T     F  D  +  V G    +  R   +L+YL  N G+ ++K QI+
Sbjct: 123 MKKKQVTENHLFTCSRFTFDIDAAEITVDGVREIISGRLFHLLKYLCDNAGQVLSKEQIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             ++G  D   ++N V  HI KLR+K+    G    + + R +GY +
Sbjct: 183 ERVWG--DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYKL 227


>gi|158334884|ref|YP_001516056.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158305125|gb|ABW26742.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 241

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 16/156 (10%)

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + +R+ SQ+ P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR 
Sbjct: 66  IEVCQELRSQSQLTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR- 124

Query: 120 KVSNNRAETGPIRVFS-----------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             S   ++T P  +F            + +    QG+   L  +E ++L YLM +  + +
Sbjct: 125 --SEQFSQTSPEALFQRIQMEGLELDLESQIAYCQGQAITLSEKESQLLTYLMQHPHQLL 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
              QI+  ++   D+    NV+ + I  LR+K+  K
Sbjct: 183 THDQIYQHLWPSGDQP-SSNVLAAQIRLLRRKIAAK 217


>gi|152971957|ref|YP_001337066.1| DNA-binding transcriptional regulator QseB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150956806|gb|ABR78836.1| putative 2-component transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 219

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            +L++D  L+ DG  A     G S++ F + LE +  L S A  D + ++  L G  G  
Sbjct: 3   ILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYS-APYDAAILDLTLPGIDGLD 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   R    H  V ++   D  +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 62  ILREWRDKGRHEPVLILTARD--ALNQRVEGLRLGADDYLCKPFALIEVAARLEALIRRA 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++    G + +  +     + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 HGQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D+ V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDDEVSSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|56695110|ref|YP_165457.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
 gi|56676847|gb|AAV93513.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
          Length = 221

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 105/226 (46%), Gaps = 17/226 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
           F+L++D   +    +     DG  ++   ++   E    +   D+  ++  L  G G   
Sbjct: 3   FLLVEDNQSLASAILDRLRLDGHVVDHAANISLAEEFVITTDYDLILLDIMLPDGDGRSF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L++ R  R  S+ P+I ++    +   +   D G DD + KP    E+ AR  A+ RR  
Sbjct: 63  LKMQRDHR--SETPVIVLTARSEVSDRVGVLDLGADDYLTKPFDFSELEARCRAVLRRRG 120

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             S+N+   G +       DP     EV G   PL  +E R+LE  +A   +  +K ++ 
Sbjct: 121 GRSSNQKRIGGLTF-----DPLSGLLEVCGLEVPLRNKELRLLEIFLAAPDQIFSKARLV 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +DE V EN +E ++ +LRKK+    G + + + R LGY I
Sbjct: 176 DRLFS-YDEEVSENAIEVYVGRLRKKIAGS-GVE-IQTVRGLGYRI 218


>gi|237752748|ref|ZP_04583228.1| phosphate regulon response regulator PhoB [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376237|gb|EEO26328.1| phosphate regulon response regulator PhoB [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 221

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 6/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEK 59
           +FVL DD  +++    AL     +  +GF  +E F+E L+++  + +          G  
Sbjct: 2   VFVLEDDTNILELVLYAL-KSQHIQSQGFLEVETFKEALKTTTPQALVLDVMLPNASGFD 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  +   A   +P++ ++   +    +   D G DD + KP    E LARV AI RR 
Sbjct: 61  ILKNIKTNPATQGIPVLMLTALNNEFDKVKGLDLGADDYITKPFSVMEFLARVRAILRRN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K S+     G +      R  +V GE   L  +E  +L +L+ N+ +  ++ ++   ++G
Sbjct: 121 KESDTIC-YGILEFSYTTRSVKVCGEPIMLTLKEFELLGFLLKNQNRAFSRDELLEILWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  + E   ++ HI  LRKKL +   +  + + R +GY I
Sbjct: 180 -YSYSGESRTIDIHIKTLRKKLGSASKY--IQTIRGIGYKI 217


>gi|197336815|ref|YP_002157801.1| transcriptional regulator [Vibrio fischeri MJ11]
 gi|197314067|gb|ACH63516.1| transcriptional regulator [Vibrio fischeri MJ11]
          Length = 228

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 3/131 (2%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           SG DD + KP    E+ AR+  + RR  +K S++    G  ++    +  E   +   L 
Sbjct: 93  SGADDYLVKPFSFDELHARILTVGRRGQVKNSDDDISIGLFKLDLAKKTLEFDTKFIDLT 152

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           + E +I+E L  ++ + +    I   + G FD ++ +N +ESH+S +RKK++   G  PV
Sbjct: 153 KNEYKIIECLFLSKNQVMTTENISDYVVGSFD-SLSKNTIESHLSSVRKKVKALGGELPV 211

Query: 211 DSKRFLGYSID 221
            +KR  GY ++
Sbjct: 212 KNKRGFGYYVE 222


>gi|191639614|ref|YP_001988780.1| Response regulator [Lactobacillus casei BL23]
 gi|190713916|emb|CAQ67922.1| Response regulator [Lactobacillus casei BL23]
 gi|327383726|gb|AEA55202.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei LC2W]
 gi|327386919|gb|AEA58393.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei BD-II]
          Length = 233

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 17/169 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  SQVP+I ++    +   +     G DD + KP    E++ARV    R     +N
Sbjct: 68  RKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALR-----HN 122

Query: 125 RAETGPIRVFS------DGRDPEVQ-GEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    P  +F       D  +  VQ GEV  PL +RE  +L  L+A++ +  ++  + +A
Sbjct: 123 RQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAA 182

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
           ++G  FD   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 183 VWGTDFDG--QPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|152989182|ref|YP_001345963.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PA7]
 gi|150964340|gb|ABR86365.1| two-component response regulator CreB [Pseudomonas aeruginosa PA7]
          Length = 229

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---- 122
           +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+       
Sbjct: 67  LRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAPRPAPL 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              A  GP +V ++       G    L R E R+L+ L+    +  ++ Q+  A+ G+  
Sbjct: 127 EEAALHGPFQVDAERVRIHYHGAPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL-GVAS 185

Query: 183 EAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYS 219
           EA  E  ++SHI  LR KLR  N  G + + + R LGYS
Sbjct: 186 EAGYERNIDSHIKSLRAKLRQVNARG-EAIQTHRGLGYS 223


>gi|148256853|ref|YP_001241438.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146409026|gb|ABQ37532.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 221

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R   A   +P++ ++   S    +D  D+G DD + KP  + E+LAR+ AI RR    
Sbjct: 63  LKRWRTAGRHMPVLILTARASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRR---- 118

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +     P+    D    E Q +V       PL + E R++ YL+   G+ V + ++   
Sbjct: 119 -SAGHAAPVLSSGDLMLDERQMKVSLAGVPVPLSQLEYRLIAYLLRQSGRVVPQHELEEN 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YGL  +  + N +E  I ++RK    KLG + ++++R  GY I
Sbjct: 178 VYGLGHDH-DSNALEVLIRRVRK----KLGAEIIETRRGFGYMI 216


>gi|193071717|ref|ZP_03052617.1| DNA-binding response regulator PhoP [Escherichia coli E110019]
 gi|192954979|gb|EDV85482.1| DNA-binding response regulator PhoP [Escherichia coli E110019]
          Length = 223

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   +++      P 
Sbjct: 73  LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 133 QVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + +LRKK++ +   + + + R  GY
Sbjct: 192 VLMGRLRKKIQAQYPQEVITTVRGQGY 218


>gi|115352153|ref|YP_773992.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282141|gb|ABI87658.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 224

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 10/186 (5%)

Query: 41  SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           SA  D   ++  L G  G  +L   R +   +  P++ +S    +   +    +G DD +
Sbjct: 42  SASYDAITLDRMLPGADGLAILTAMRTVGIDT--PVLMLSALGDVDERIRGLRAGGDDYL 99

Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERR 155
            KP    E+ AR+  + RR + S    +T    GP+ +    R      +  PL   E R
Sbjct: 100 TKPFDSGELSARIEVLLRRRQASGVPQQTLLTVGPLELDLISRCARRGVDEIPLLPTEFR 159

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
           +LE++M N G+ + +T +F A++G  FD     N+++ H+ +LRKK+        + + R
Sbjct: 160 VLEFMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIDVHMGRLRKKIDPPGAVPMIQTVR 217

Query: 215 FLGYSI 220
             GY +
Sbjct: 218 GSGYML 223


>gi|219853840|ref|YP_002470962.1| hypothetical protein CKR_0497 [Clostridium kluyveri NBRC 12016]
 gi|219567564|dbj|BAH05548.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 230

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  + +R  ++ +P++ ++    + +    F+ G+DD + KPI   E+L R+ A+ RR  
Sbjct: 68  EFAKTVRKQNKNIPILFMTARDDISSKKKGFNIGIDDYMVKPIELDELLMRIEALLRRAN 127

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++ R    G + + +D     + GE  PL  RE  IL  L++   +   +TQ+    +G
Sbjct: 128 IASERKLAVGSLTLNADENMAYLNGEEVPLTVREFEILFKLLSYPKRTFTRTQLMDEFWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  E+     V+  I+KLR KL      + V + R LGY +
Sbjct: 188 IESESTPR-TVDVSITKLRSKLAECKDIEIV-TVRSLGYKV 226


>gi|281355652|ref|ZP_06242146.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281318532|gb|EFB02552.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 222

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 28/227 (12%)

Query: 16  IALFGDDG----VSLEGFNSLEFEEWLQS----------SAREDVSAIEAFLIG-KGEKV 60
           I L  DD     + L+GF    FE    +          SA  D + I+  L    G  V
Sbjct: 3   ILLIEDDAKTAEIILKGFQQAGFETCHAADGLDGLFKAKSALFDAAVIDVMLPKLNGFTV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R   A  ++P+I +S   S+++ +   + G DD + KP    E++ARV A  RR  
Sbjct: 63  IEELRA--AGLKLPIIVLSAKDSVESKITGLEKGGDDYLAKPFSMAELIARVHAQLRR-- 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++  AET  + V     D   +     GE   L   E ++LEYLM N+G+ V+K  I  
Sbjct: 119 -ASCAAETTVLTVEDLTLDLISRKVVRGGERIELQPLEYQLLEYLMRNKGRVVSKNTIME 177

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   FD     N+VES + +LR+K+        + + R  GY ++
Sbjct: 178 HVWEYHFD--TRTNIVESRVCRLREKIDKPFARKLIRTVRGFGYVLE 222


>gi|39937833|ref|NP_950109.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|192293618|ref|YP_001994223.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39651693|emb|CAE30215.1| two-component phosphate transcriptional regulator PhoB
           [Rhodopseudomonas palustris CGA009]
 gi|192287367|gb|ACF03748.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 237

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA     Q+P+I ++        +    +G DD + KP    E+LARV  + R
Sbjct: 62  IELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   +  R  T    G + +  D R     G    L   E R+LE+ + + G+  ++ Q+
Sbjct: 122 R--AAPERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 180 LDGVWG-RDIYIDERTVDVHIGRLRKLLNIGREQDPIRTVRGAGYALD 226


>gi|319950703|ref|ZP_08024601.1| response regulator receiver [Dietzia cinnamea P4]
 gi|319435619|gb|EFV90841.1| response regulator receiver [Dietzia cinnamea P4]
          Length = 217

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 10/150 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ R +R HS   ++ ++       TL     G DD + KP   RE+ AR+ A+ RR  
Sbjct: 45  IEVCRQVRTHSDAYIVMLTARTEEVDTLIGLSVGADDYMTKPFSPRELSARIQAMMRRPR 104

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   K  ++    G + + + GR+  V G    L R E  IL  L  + G  V + 
Sbjct: 105 QATTGGGGKTPSHVHSIGQLTINTAGREVTVGGSAIGLTRTEFDILATLARDPGIVVTRA 164

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q+ +A++G  +   ++++V+ HI  LR+KL
Sbjct: 165 QLMAAVWG-PNWVGDDHLVDVHIGHLRRKL 193


>gi|257883757|ref|ZP_05663410.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257886516|ref|ZP_05666169.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257892721|ref|ZP_05672374.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257895106|ref|ZP_05674759.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257897715|ref|ZP_05677368.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|261208092|ref|ZP_05922767.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289565479|ref|ZP_06445927.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|293377908|ref|ZP_06624089.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293552967|ref|ZP_06673618.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|293571287|ref|ZP_06682321.1| DNA-binding response regulator [Enterococcus faecium E980]
 gi|294615766|ref|ZP_06695615.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|294619502|ref|ZP_06698943.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|257819595|gb|EEV46743.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257822570|gb|EEV49502.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257829100|gb|EEV55707.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257831671|gb|EEV58092.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257835627|gb|EEV60701.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260077676|gb|EEW65392.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289162677|gb|EFD10529.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|291591379|gb|EFF23039.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|291594264|gb|EFF25697.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|291602865|gb|EFF33066.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|291608694|gb|EFF37982.1| DNA-binding response regulator [Enterococcus faecium E980]
 gi|292643455|gb|EFF61584.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 224

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 7/140 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122
           IR  S+VP+I IS   +    +   + G DD V KP     ++A++ A+ RR     ++S
Sbjct: 67  IREVSKVPIIFISSRNTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRRSYNYTELS 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       I +  D    E+ GE+  L + E R+L  LM + GK +++ ++  A++   D
Sbjct: 127 SEMMSHNGITLNVDNGSMEINGEIIDLSKNEYRLLFILMKHNGKILSREKLLRALWD--D 184

Query: 183 EA-VEENVVESHISKLRKKL 201
           E  V++N +  +I++LR+K+
Sbjct: 185 ERFVDDNTLTVNINRLRRKI 204


>gi|297202942|ref|ZP_06920339.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197711934|gb|EDY55968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 249

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 6/140 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR+ S VPLI ++ + +    +    +G DD + KP   RE++AR+ A+ RR +   +
Sbjct: 94  RSIRSLSDVPLIAVTGWGTELDRVLGLQAGADDYLVKPYGFRELVARMDAVMRRSRPQVH 153

Query: 125 RAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    GP+R+ +  R+  + G V  + R+E  +L  L  +    V++ +I   ++G  
Sbjct: 154 TEQVVLRGPLRIDAASREVSLHGRVVEVTRKEFDLLYLLACHPETVVSRKRIMQQVWG-- 211

Query: 182 DEAVEENVVESHISKLRKKL 201
             +     V++H+S LR KL
Sbjct: 212 -GSWSRRTVDTHVSSLRGKL 230


>gi|89895181|ref|YP_518668.1| hypothetical protein DSY2435 [Desulfitobacterium hafniense Y51]
 gi|219669611|ref|YP_002460046.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89334629|dbj|BAE84224.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539871|gb|ACL21610.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 226

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 3/141 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R HS VP++ ++   +    L  +  G DD + KP    E+ A+  ++ RR K  
Sbjct: 66  ICRELRRHSDVPIMFLTARQAEGDRLHGYGLGCDDYMIKPFSLAELYAKANSLVRRAKGM 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V ++    G I +        V G V  L  +E  +L+ LM N GK V +  + + I+G 
Sbjct: 126 VRDDLMSVGGISLDPYRGTVSVDGRVVELAPKEYALLKLLMENAGKIVTRETLLARIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +D +  + VV++HI KLR+ L
Sbjct: 185 YDFSGNDRVVDNHIKKLRQTL 205


>gi|258538863|ref|YP_003173362.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|257150539|emb|CAR89511.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 231

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +L + +RA   + P++ ++   +L   +  F+ G DD + KP H  E++ R+ A+ +R 
Sbjct: 63  FDLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRT 122

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    GP  V  +  +  +  +   L  +E  +L YL+ N+   + K QIF  +
Sbjct: 123 GHFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G FD     +VVE ++S LRKKL+       + + R +GY
Sbjct: 183 WG-FDSDTAVSVVEVYMSNLRKKLKPMQADVWIKTIRNVGY 222


>gi|269120503|ref|YP_003308680.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268614381|gb|ACZ08749.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 219

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 1/137 (0%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S VP++ ++     ++ L  ++ G DD + KP     +LA++  I  R+ V+ +
Sbjct: 65  REIRKTSNVPVVILTALSDDESQLLAYEIGADDFIIKPFKKDILLAKIRRISERISVNQH 124

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + G + +  D     V         +E  IL YL+ N+G   ++  I   I+G +D  
Sbjct: 125 SYKFGGLEIDKDSYRILVDSREVKFAPKEFEILLYLIENKGVIKSRDDILIHIWG-YDSE 183

Query: 185 VEENVVESHISKLRKKL 201
           V + VV++HI K+RKKL
Sbjct: 184 VFDRVVDNHIKKIRKKL 200


>gi|218288804|ref|ZP_03493067.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258512312|ref|YP_003185746.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218241162|gb|EED08338.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257479038|gb|ACV59357.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 226

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 106/221 (47%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++   + LF   G +++  +++        S   D   ++ +++  G+ + 
Sbjct: 3   LLVVEDEATLRRELVQLFQQRGYTVDAVDTVFAAVEHGMSGAYDCIVLD-YMLPDGDGIE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L ++  A    P++ ++     +  +   + G DD + KP H  E+LARV A+ RR   
Sbjct: 62  ALTQLREAGCTTPILMLTVKNDPKDRVLGLNKGADDYLGKPFHPDELLARVGALVRRSPA 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   E G  ++ +  R  E  G    L  +E  ++E L  ++ + + + Q+ + ++G
Sbjct: 122 LTDDEVLEHGRAKLHTRSRSLEYDGRTLELTSKEFALMEALFRHKHQVMTRDQLIAKVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V ++ ++++I  LR+K  N    + + + R  GY++
Sbjct: 182 P-DAEVADSALDTYIYFLRRKCSNIGWKNAIVTVRGRGYAL 221


>gi|15801327|ref|NP_287344.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 EDL933]
 gi|15830856|ref|NP_309629.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. Sakai]
 gi|168749733|ref|ZP_02774755.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756469|ref|ZP_02781476.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762547|ref|ZP_02787554.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4501]
 gi|168770998|ref|ZP_02796005.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776057|ref|ZP_02801064.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782467|ref|ZP_02807474.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787605|ref|ZP_02812612.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC869]
 gi|168800458|ref|ZP_02825465.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC508]
 gi|195938762|ref|ZP_03084144.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807257|ref|ZP_03249594.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816336|ref|ZP_03257515.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822245|ref|ZP_03262564.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395806|ref|YP_002270047.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328143|ref|ZP_03444225.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792590|ref|YP_003077427.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. TW14359]
 gi|261227231|ref|ZP_05941512.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258762|ref|ZP_05951295.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O157:H7 str. FRIK966]
 gi|291282165|ref|YP_003498983.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O55:H7 str. CB9615]
 gi|81764773|sp|Q8X738|PHOP_ECO57 RecName: Full=Transcriptional regulatory protein phoP
 gi|12514781|gb|AAG55956.1|AE005328_14 transcriptional regulatory protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13361066|dbj|BAB35025.1| transcriptional regulatory protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768498|gb|EDU32342.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015943|gb|EDU54065.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999973|gb|EDU68959.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356343|gb|EDU74762.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360170|gb|EDU78589.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367118|gb|EDU85534.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372453|gb|EDU90869.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC869]
 gi|189377228|gb|EDU95644.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC508]
 gi|208727058|gb|EDZ76659.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732984|gb|EDZ81672.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737730|gb|EDZ85413.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157206|gb|ACI34639.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4115]
 gi|209772868|gb|ACI84746.1| transcriptional regulatory protein [Escherichia coli]
 gi|209772870|gb|ACI84747.1| transcriptional regulatory protein [Escherichia coli]
 gi|209772872|gb|ACI84748.1| transcriptional regulatory protein [Escherichia coli]
 gi|209772874|gb|ACI84749.1| transcriptional regulatory protein [Escherichia coli]
 gi|209772876|gb|ACI84750.1| transcriptional regulatory protein [Escherichia coli]
 gi|217318570|gb|EEC26996.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591990|gb|ACT71351.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O157:H7 str. TW14359]
 gi|290762038|gb|ADD55999.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O55:H7 str. CB9615]
 gi|320187857|gb|EFW62527.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7
           str. EC1212]
 gi|320637598|gb|EFX07398.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. G5101]
 gi|320643158|gb|EFX12359.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H- str. 493-89]
 gi|320648095|gb|EFX16771.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H- str. H 2687]
 gi|320653928|gb|EFX22002.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659408|gb|EFX26977.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664545|gb|EFX31696.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326339409|gb|EGD63221.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7
           str. 1044]
 gi|326341468|gb|EGD65259.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7
           str. 1125]
          Length = 223

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   +++      P 
Sbjct: 73  LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 133 QVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + +LRKK++ +   + + + R  GY
Sbjct: 192 VLMGRLRKKIQAQYPQEVITTVRGQGY 218


>gi|317489141|ref|ZP_07947665.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325833786|ref|ZP_08166162.1| response regulator MprA [Eggerthella sp. HGA1]
 gi|316911761|gb|EFV33346.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325485228|gb|EGC87699.1| response regulator MprA [Eggerthella sp. HGA1]
          Length = 228

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL R +R A    P++ ++     +T    F +GVDD + KP   +E++ RV A+ RR 
Sbjct: 61  LELVRQLREAGWDTPILMLTARQDAETLHGGFIAGVDDYLTKPADMKELVLRVRALLRRS 120

Query: 120 KVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  NR   G   + ++    E  GE   LP +E ++L  L++  G+   + Q+   ++
Sbjct: 121 GAAEANRLVIGAAVLDANRNTIERGGEKVELPSKEFQLLFRLLSTPGRAYTRMQLLDEVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D    E  V  H+++LR +  +   F  + + R +GY 
Sbjct: 181 G-WDTESSEATVNVHVNRLRSRFEDWPDF-AIKTVRGIGYC 219


>gi|296273138|ref|YP_003655769.1| winged helix family two component transcriptional regulator
           [Arcobacter nitrofigilis DSM 7299]
 gi|296097312|gb|ADG93262.1| two component transcriptional regulator, winged helix family
           [Arcobacter nitrofigilis DSM 7299]
          Length = 219

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AE 127
           +   +P++ IS    L   +   DSG DD + KP    E++ARV A+ RR K   ++  +
Sbjct: 69  SQKDIPILIISARDKLDQRILGLDSGADDYLCKPFDLDEVIARVQALLRRSKNQLSKLIK 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              +   S  +       V  L +RE  I E+++ N    V+K  I   I   FD+    
Sbjct: 129 YKDLEYNSLSKTVTKDDVVIELSKREINIFEHMLLNLNNVVSKENIVDHITS-FDDEFNP 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             VE+++S+LRKKL + +    V   R LGY
Sbjct: 188 TAVETYVSRLRKKLGDSINLKTV---RGLGY 215


>gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
 gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
          Length = 269

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 20/207 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +   A++              ++   + +  L R+ R    VP++ +
Sbjct: 61  ALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLTVLGRLRRELPDVPVLFL 120

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134
           +   +++  +    +G DD V KP    E++AR+  + RR   ++ R+E+    G + + 
Sbjct: 121 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRAGAADRRSESVLVVGDLTLD 180

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +    G+   L   E  +L +LM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 181 EDSHEVSRGGQDIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 239

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           S LR+K+    G +P + ++R  GY I
Sbjct: 240 SYLRRKI--DAGREPMIHTRRGAGYLI 264


>gi|293375621|ref|ZP_06621895.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325845388|ref|ZP_08168685.1| response regulator protein GraR [Turicibacter sp. HGF1]
 gi|292645838|gb|EFF63874.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325488575|gb|EGC90987.1| response regulator protein GraR [Turicibacter sp. HGF1]
          Length = 223

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 84/159 (52%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           +R  SQ+P+I IS        +   + G DD ++KP     ++A++ A+ RR      + 
Sbjct: 67  MRKLSQIPIIFISSMSDNMNIVMAMNMGGDDFISKPFDLTVMVAKIQALLRRSYSFSGTL 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + +  +    E Q     L + E +IL+ L+ N+ K V++ +I   ++ L D 
Sbjct: 127 NVIEHQGVILNLNDATVEYQQTKIELTKNEFKILQLLLENKSKIVSREEIMECLW-LSDS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            +++N +  ++++LRK+L N +G +  + +K+ +GY ++
Sbjct: 186 FIDDNTLTVNVTRLRKRL-NDIGLENFIKTKKGIGYMVE 223


>gi|253579765|ref|ZP_04857033.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848764|gb|EES76726.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58
           M   ++D   +++  I      G    GF N  E  + L+    E +  ++  L G  G 
Sbjct: 1   MIYCVEDERNIRELLIYTLETTGFKARGFGNGNELMKALKEEIPELI-LLDIMLPGDDGY 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +LE  + + +   VP+I ++   +    +   + G DD + KP    E +ARV A+ RR
Sbjct: 60  TILEQLKSMPSVKDVPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLRR 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               N   E     ++ +    EV  + E   L R+E  +L+YL+ N+G  + + QI   
Sbjct: 120 SARQNEDKELHYDELYLNVGRHEVRYREEKVDLTRKEFELLQYLLENKGLVMTRNQILCH 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D   E   V+ H+  LR+KL      + +++ R +GY I
Sbjct: 180 VWG-YDFDGETRTVDVHVRTLRQKLGE--AGNLIETVRGVGYRI 220


>gi|238896533|ref|YP_002921273.1| DNA-binding transcriptional regulator QseB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330008924|ref|ZP_08306330.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
 gi|238548855|dbj|BAH65206.1| putative 2-component transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328535024|gb|EGF61548.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
          Length = 219

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            +L++D  L+ DG  A     G S++ F + LE +  L S A  D + ++  L G  G  
Sbjct: 3   ILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYS-APYDAAILDLTLPGIDGLD 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   R    H  V ++   D  +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 62  ILREWRDKGRHEPVLILTARD--ALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRA 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++    G + +  +     + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 HGQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D+ V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDDEVSSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|284029920|ref|YP_003379851.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283809213|gb|ADB31052.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 244

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 2/109 (1%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD V KP    E++AR+ AI RR    +    T GP+ + + G     +G+   +   
Sbjct: 114 GADDYVTKPFDLEELIARIRAILRRTAGHHTDVLTVGPLTLDAQGHQVTREGQPVKVSPT 173

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           E R+L YLM N G+ V+K QI   ++  +D   + ++V+++IS LR+K+
Sbjct: 174 EFRLLRYLMENAGRVVSKAQILDRVWQ-YDFGGDMSIVDTYISYLRRKV 221


>gi|148977229|ref|ZP_01813856.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3]
 gi|145963511|gb|EDK28774.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3]
          Length = 229

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 15/151 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  + +R H + P++ ++        +   + G DD + KP   RE+LAR+ AI RR +
Sbjct: 60  METLKKLREHWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQ 119

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +N      +R +   I VF   ++    GE+  L   E  +L +L+ N G+ + K  + 
Sbjct: 120 TTNTPKAASDRVQYQDIEVFPGKQEAYCNGEIIDLTTTEFALLSHLIQNPGQVITKEALS 179

Query: 175 SAIYG----LFDEAVEENVVESHISKLRKKL 201
             + G     FD A     ++ HIS LRKK+
Sbjct: 180 LDVLGKRLAAFDRA-----IDMHISNLRKKI 205


>gi|113972144|ref|YP_735937.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|113886828|gb|ABI40880.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
          Length = 227

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129
           P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR   S  +A      G
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAGKASPVITNG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  + +   +     E+  L   E ++ E  M ++G+  +KT +   IY   D  ++ NV
Sbjct: 131 PFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYDQ-DFDLDSNV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E  I +LRKKL     ++ +++ R  GY +
Sbjct: 190 IEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|34498090|ref|NP_902305.1| two-component response regulator [Chromobacterium violaceum ATCC
           12472]
 gi|34103945|gb|AAQ60305.1| probable two-component response regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 221

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 25/227 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+  G +     +G  ++   S    +   ++   DV  +   L    E  +
Sbjct: 3   VLLVEDNRLIAQGIVTGLRANGCIVDAVGSAAQADLALATLNVDVMILNLGL--PDENGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R    +VP++ ++   S++  +    +G DD + KP    E++AR+ A+ RR+ 
Sbjct: 61  SLLRRLRTRGVRVPILVLTARDSVEDRVAALRAGADDYLLKPFDLDELVARLHALTRRMA 120

Query: 121 VSNNRAETGPIRVFSDGR---DPEVQGEVF------PLPRRERRILEYLMANRGKRVAKT 171
             +       + V  DGR   DP  +GEV+       L RRE  +L  L+   G+ ++  
Sbjct: 121 GRS-------VDVIEDGRLRLDP-ARGEVWLDESPVALTRREMALLMALLRADGRILSPD 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           Q+   +Y  + E +E N +  HI  LR+    KLG + V + R LGY
Sbjct: 173 QLKDRLYD-YSEEIESNALNVHICHLRR----KLGPNVVKTVRGLGY 214


>gi|302188270|ref|ZP_07264943.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 223

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 75/137 (54%), Gaps = 3/137 (2%)

Query: 67  IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +RA S+ +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  +   R
Sbjct: 66  LRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGER 125

Query: 126 AETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            +   +  +  D R   +  E+  L  RE+ +LE L+A  G+ ++K Q+ + ++GL DE 
Sbjct: 126 QQRCGVLAYDLDTRRFMLGEELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFGL-DEE 184

Query: 185 VEENVVESHISKLRKKL 201
              + +E ++ +LRKKL
Sbjct: 185 ASPDAIEIYVHRLRKKL 201


>gi|156933148|ref|YP_001437064.1| hypothetical protein ESA_00958 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531402|gb|ABU76228.1| hypothetical protein ESA_00958 [Cronobacter sakazakii ATCC BAA-894]
          Length = 226

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R    VP++ ++ + ++   +   + G DD + KP    E+ AR+ A+ RR +  
Sbjct: 63  LSRLRRRGQAVPVLLLTAHGAVADRVKGLNEGADDYLPKPFELSELEARLRALVRRSEGQ 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              A+      F D    E+QG    L  RE  +L  LM  R + V + Q+F  ++ L D
Sbjct: 123 VQEAQRLGELTFHDEGYFELQGRPLALTPREHALLTVLMYRRRRPVTRQQLFEQVFSLSD 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
           +   E+ +E +I +LRKKL   L  +  + + R LGY ++ +
Sbjct: 183 DVSPES-IEIYIHRLRKKL---LASNVQITTLRGLGYVLECS 220


>gi|158321191|ref|YP_001513698.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141390|gb|ABW19702.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 233

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 12/148 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  SQVP++ ++    L   +   D G DD + KP   +E++ARV AI+RRL  
Sbjct: 66  EICKKIRIESQVPILMLTAKVDLTDRIYGLDIGADDYMIKPFSPKELVARVNAIWRRLGE 125

Query: 122 SNNRAETGPIRVFS------DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +A    I  FS      D    EV  +G++  L   E +IL  L  N GK   + ++
Sbjct: 126 DTVKAN---ILSFSNEDLTVDLNKLEVRKKGKLIDLTSTEYKILSLLSKNTGKIFTREEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            + I G +D    +  +++HI  +R+K+
Sbjct: 183 VTKILG-YDYEGYDRTIDTHIKNIRQKI 209


>gi|299529796|ref|ZP_07043229.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298722210|gb|EFI63134.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 224

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 15/223 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG----E 58
           +L++D ALV  G  A     G+ L+GF         Q+ A    S  +  ++  G    +
Sbjct: 4   LLVEDNALVASGVKA-----GLQLQGFGVDVVGCASQADAALKSSHFDVCVLDLGLPDED 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +  L R  R   ++P++ ++   ++   ++   +G DD + KP    E+ AR+ A+ RR
Sbjct: 59  GLHLLARWRRQGLELPVLVLTARDAVDQRIEGLQTGADDYLVKPFDLHELAARLHALLRR 118

Query: 119 LKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G ++V         +G +  L RRE  +L  L+ + G+ ++  Q+  ++
Sbjct: 119 AAGRTVDWIVLGDVKVDLAAGQAIREGSIVDLSRREWALLRALLQSPGRVLSLEQLRDSL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG +   VE N V  H+  LR+    KLG D V++ R +G+ +
Sbjct: 179 YG-YSLDVESNAVNVHVHHLRR----KLGSDMVETVRGVGFRL 216


>gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 234

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 109/224 (48%), Gaps = 26/224 (11%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEKVLELPR 65
           R+L+ +GY  +   DG           EE L+  +  R D++ ++  +  K    L++ R
Sbjct: 21  RSLIFNGYTVILATDG-----------EEALKLIAEERPDLAILDVMMPKKDG--LDVCR 67

Query: 66  IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
            +R+H   +P++ ++   S++  +   D+G DD + KP    E+LAR  +++RR  + + 
Sbjct: 68  ELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAARPAI 127

Query: 124 NRAET-GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ET  P+R      +PE + +VF       L R E  +LE LM N  K +++  I   
Sbjct: 128 QEGETREPLRFEDLTLNPETR-DVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTILEE 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E +I  LR+K         + + R +GY++
Sbjct: 187 VWG-YDFPTSGNALEVYIGYLRRKTEANNETRLIHTVRGVGYAL 229


>gi|253997123|ref|YP_003049187.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983802|gb|ACT48660.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 221

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 25/161 (15%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
           A    P+I ++     Q  +  F+SG DD V+KP    E+LARV A+ +R  +  NRA  
Sbjct: 69  AQINTPVIILTARGGWQDKVAGFNSGADDYVSKPFQIEELLARVGAVLKRSML--NRASE 126

Query: 127 ---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E     +F DG   +       L   E R+L Y M + G  ++K+ +   +
Sbjct: 127 LQSTQFKLNEHTQSIIFDDGNQQQ-------LTNVEFRLLRYFMLHPGHILSKSVLTEHV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           Y  +DE  + NV+E +I++LR+    K+G   + ++R  GY
Sbjct: 180 YE-YDEDKDSNVIEVYINRLRQ----KIGSQHIQTRRGQGY 215


>gi|210614659|ref|ZP_03290270.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
 gi|210150649|gb|EEA81658.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
          Length = 224

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L +   IR+H   P++ ++        +  F  G DD + KP    E+ ARVAA  RR  
Sbjct: 61  LTVCEKIRSHISCPILFLTARIETADKIKGFQVGADDYIIKPFDIDELGARVAAHLRR-- 118

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N +     +R FS+       R+  + G    L ++E  I+E L  N G+   + +I+
Sbjct: 119 -ENRKQGQSELRFFSEMVIDYSKREVSINGTPVNLSKKEFDIVELLSLNAGQVFDRERIY 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            A++GL  E   + ++E HI K+R K         +++   +GY   WN
Sbjct: 178 EAVWGLDGEGNSDTIME-HIRKIRSKFTALSHHSYIETVWGVGYK--WN 223


>gi|119486576|ref|ZP_01620626.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119456193|gb|EAW37325.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 253

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 78/143 (54%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NR 125
           IR  S+VP+I ++    +   +   + G DD + KP   +E+ AR+ AI RRL+ +N NR
Sbjct: 79  IRTQSEVPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIQAILRRLRETNANR 138

Query: 126 ---AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              AET     +R+ +  R      ++ PL   E  +LE L+ + G+ V++++I   ++G
Sbjct: 139 DVSAETIQVDALRIDTIKRRVYKGEQLIPLTYIEFNLLELLLKHSGEAVSRSEILQELWG 198

Query: 180 LFDEAVEE-NVVESHISKLRKKL 201
                + +  VV+ H+++LR K+
Sbjct: 199 YAPRRIADMRVVDVHVARLRAKI 221


>gi|116496108|ref|YP_807842.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116106258|gb|ABJ71400.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 233

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 17/169 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  SQVP+I ++    +   +     G DD + KP    E++ARV    R     +N
Sbjct: 68  RKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALR-----HN 122

Query: 125 RAETGPIRVFS------DGRDPEVQ-GEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    P  +F       D  +  VQ GEV  PL +RE  +L  L+A++ +  ++  + +A
Sbjct: 123 RQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAA 182

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
           ++G  FD   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 183 VWGTDFDG--QPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|17229456|ref|NP_486004.1| two-component system response regulator [Nostoc sp. PCC 7120]
 gi|17131054|dbj|BAB73663.1| two-component system response regulator [Nostoc sp. PCC 7120]
          Length = 236

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 7/151 (4%)

Query: 57  GEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  LE+ + +R   ++ P++ ++   +L   +   D+G DD + KP   RE+LARV A+
Sbjct: 62  GKTGLEICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRAL 121

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAK 170
            RR       A  G + V     D E      QG V  L ++E ++L+Y M + G+ +  
Sbjct: 122 LRRSSSQTYEATPGRLTVADLELDCENQVAYRQGRVIELSQKESQLLQYFMEHTGQLLTH 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            QI   ++   +E    NV+ + I  LR+K+
Sbjct: 182 AQILQHLWE-DNEPPNSNVIAALIRLLRRKI 211


>gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 225

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 9/160 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L + +R+ S +P+I ++        +   + G DD + KP + RE++AR+ A++RR  
Sbjct: 61  LTLCKEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTT 120

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ++  + G I +    +  +  G+   L  +E  +L  L +N GK  +K ++   
Sbjct: 121 SPFVKKHDIIKIGDITINIPDKIVQKNGKEIDLTNKEFDLLVLLASNPGKLYSKDKLMDL 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           I+G FD   + N V  HI KLR+K+ +    DP + K   
Sbjct: 181 IWG-FDFYGDTNTVNVHIRKLREKIED----DPANPKHIF 215


>gi|238854466|ref|ZP_04644805.1| two-component system regulator [Lactobacillus jensenii 269-3]
 gi|260665486|ref|ZP_05866333.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282934536|ref|ZP_06339788.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|313471830|ref|ZP_07812322.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153]
 gi|238832893|gb|EEQ25191.1| two-component system regulator [Lactobacillus jensenii 269-3]
 gi|239530126|gb|EEQ69127.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153]
 gi|260560754|gb|EEX26731.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281301374|gb|EFA93666.1| response regulator ArlR [Lactobacillus jensenii 208-1]
          Length = 240

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 11/151 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+ 
Sbjct: 61  LEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVN 120

Query: 120 ---KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              KVS+N A    +  F+D       R      +   L +RE  +L  L+ N+   V++
Sbjct: 121 IEKKVSSNTAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 181 EQLLNKIWG-PESNIETNVVEVYVRYLRNKI 210


>gi|19704596|ref|NP_604158.1| two-component response regulator [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296327707|ref|ZP_06870248.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19714890|gb|AAL95457.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296155193|gb|EFG95969.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 233

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 3/142 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  ++ P+I I+   S+   ++  D G +D + KP    E+LAR+    R  + 
Sbjct: 71  EVCQELRKLAETPIIIITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 130

Query: 122 SNNRAETGPIRVFSDGRDPEV-QGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           SNN+       +  D    +V   EV   L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 131 SNNKQFYLENEIKMDILAKKVFLNEVEVSLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +D   EE +V+ +I+ LRKK+
Sbjct: 191 -YDFDGEEKIVDVYINSLRKKI 211


>gi|295093611|emb|CBK82702.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G+G   L+  R +R  ++VP+I ++   +    ++ F +G DD + KP     +  R+ A
Sbjct: 57  GRG---LDYCRELRKSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEA 113

Query: 115 IYRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           + RR +     V   R   G + V  +     +  E   L   E RILE L+ N+G+ + 
Sbjct: 114 VLRRSENALDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLT 173

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +  I   I+   +  V+EN +  HI +LR+K+    G
Sbjct: 174 RDMIIQKIWDDNENYVDENTLNVHIRRLRQKIEKDAG 210


>gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 220

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LDVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQ 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +Y
Sbjct: 120 AGRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G + E +  N VE +I  LRK    KLG D + + R LGY I
Sbjct: 180 G-WGEEIGSNTVEVYIHALRK----KLGADLIRNVRGLGYMI 216


>gi|259047260|ref|ZP_05737661.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259036036|gb|EEW37291.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 235

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 84/156 (53%), Gaps = 17/156 (10%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P++ I+    L++  + F  GVDD + KPI   E++ RV A+ RR ++     ET  + 
Sbjct: 82  LPILMITAKSQLESLEEAFKLGVDDYMVKPIRLTELVLRVQALLRRAQL-----ETEKVL 136

Query: 133 VFSDGR---------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +F   R         D E + EV+ +PR+E  +L  L++N  K   +  +   I+G+ +E
Sbjct: 137 LFEHTRLDYNALTLTDLE-RDEVYQIPRKEFYLLYKLLSNPEKIFTRLDLLDDIWGM-EE 194

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++E +V++ I ++R+K +    F+ V + R LGY 
Sbjct: 195 DLDERLVDACIKRVRQKFKENKDFEIV-TIRGLGYK 229


>gi|254000175|ref|YP_003052238.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|313202139|ref|YP_004040797.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|253986854|gb|ACT51711.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
 gi|312441455|gb|ADQ85561.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 223

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 10/175 (5%)

Query: 36  EWLQSSAREDVSAIE----AFLIGKG---EKVLELPRIIRAHSQ-VPLIGISDYPSLQTT 87
           +W Q   + DV+  E    A ++  G      LE+ R +R   Q VP++ +S    L   
Sbjct: 28  DWTQDGQQADVALHEQVYDAVVLDLGLPRMDGLEVLRRLRQRKQLVPVVILSAREGLDDR 87

Query: 88  LDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV 146
           +   D G DD + KP    E+ AR+ A I R  +V  +  + GP+R  S  R   V G +
Sbjct: 88  VHGLDLGADDYLTKPFKLPELEARLRAQIRRSHQVVTSYIDFGPMRFDSTDRTVTVNGAL 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
               +RE  +LE L+   G+ V+K  +   +   +D  V  N +E ++ +LRKKL
Sbjct: 148 VEFSQRELSVLEALILRSGRVVSKESLVENLCN-WDVDVGNNAIEVYVHRLRKKL 201


>gi|154482551|ref|ZP_02024999.1| hypothetical protein EUBVEN_00218 [Eubacterium ventriosum ATCC
           27560]
 gi|149736576|gb|EDM52462.1| hypothetical protein EUBVEN_00218 [Eubacterium ventriosum ATCC
           27560]
          Length = 228

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 86/175 (49%), Gaps = 19/175 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL+  R  ++ +++P+I ++   S    +   D G DD + KP    E+++RV A+ 
Sbjct: 60  GLSVLKDVRAEQSTAKLPVIMVTAKTSEMDKVKGLDQGADDYMTKPFGIMELISRVKALL 119

Query: 117 RRLKVSNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR  VS             +    +V  DG++ E       L  +E ++L+ L+ N G  
Sbjct: 120 RRANVSGGSHIYSFDGITMDDAKHQVLVDGQETE-------LTYKEYQLLKMLIQNSGIV 172

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + ++QI   ++G+ D   E   ++ HI  LR+K+  K     + + R +GY++++
Sbjct: 173 LQRSQILDRVWGI-DYEGESRTLDMHIKTLRRKIGEKGSL--IQTVRNVGYTMNY 224


>gi|307138638|ref|ZP_07497994.1| transcriptional regulatory protein YedW [Escherichia coli H736]
 gi|331642590|ref|ZP_08343725.1| transcriptional activator protein CopR [Escherichia coli H736]
 gi|331039388|gb|EGI11608.1| transcriptional activator protein CopR [Escherichia coli H736]
          Length = 260

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|253688253|ref|YP_003017443.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754831|gb|ACT12907.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 229

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++  +  +  ++       D++ ++  L    E  +
Sbjct: 3   ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGL--PDEDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  R H  ++P++ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIRRWRTHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    R+  + G    L   E  I+E L+ N+GK V+K  +   +Y 
Sbjct: 121 GLASQVISLPPFEIDLSRRELVIHGSPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK++     D + + R  GY  D
Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQAEAPDVITTVRGQGYRFD 221


>gi|239502903|ref|ZP_04662213.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB900]
          Length = 220

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GEKVL   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  
Sbjct: 59  GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116

Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R+  +S     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  
Sbjct: 117 RKQTLSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPDHIITRDQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A+Y  + E +E N +E  I +LRK    K+G   + + R LGY +
Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216


>gi|227552318|ref|ZP_03982367.1| response regulator [Enterococcus faecium TX1330]
 gi|227178541|gb|EEI59513.1| response regulator [Enterococcus faecium TX1330]
          Length = 244

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 7/140 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122
           IR  S+VP+I IS   +    +   + G DD V KP     ++A++ A+ RR     ++S
Sbjct: 87  IREVSKVPIIFISSRNTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRRSYNYTELS 146

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       I +  D    E+ GE+  L + E R+L  LM + GK +++ ++  A++   D
Sbjct: 147 SEMMSHNGITLNVDNGSMEINGEIIDLSKNEYRLLFILMKHNGKILSREKLLRALWD--D 204

Query: 183 EA-VEENVVESHISKLRKKL 201
           E  V++N +  +I++LR+K+
Sbjct: 205 ERFVDDNTLTVNINRLRRKI 224


>gi|189467435|ref|ZP_03016220.1| hypothetical protein BACINT_03824 [Bacteroides intestinalis DSM
           17393]
 gi|189435699|gb|EDV04684.1| hypothetical protein BACINT_03824 [Bacteroides intestinalis DSM
           17393]
          Length = 225

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 55  GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G G  +L EL R+ R+ S   ++ IS   SL   ++  + G DD + KP H  E+ ARV 
Sbjct: 57  GSGLDLLRELKRLHRSDS---VLIISAKDSLDDKVEGLELGADDYLTKPFHLAELNARVK 113

Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++ RR +   + + T G + ++ D R  EV G    L R+E  +L Y + N  + + K  
Sbjct: 114 SVIRRRQAKGDVSITVGNLLLYPDKRQVEVGGVPLQLNRKEFDLLYYFIVNPNRVINKMS 173

Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
           +  +++G   D+A   + + S +  LR+KL+ 
Sbjct: 174 LAESVWGDNIDQADSLDFIYSQVKNLRRKLKQ 205


>gi|182417787|ref|ZP_02949103.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237667113|ref|ZP_04527097.1| putative lantibiotic biosynthesis regulatory protein [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378511|gb|EDT76042.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237655461|gb|EEP53017.1| putative lantibiotic biosynthesis regulatory protein [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 220

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR     P++ ++     +  +     G DD ++KP   +E+ ARV A  RR +  
Sbjct: 62  LCRKIRNLVDCPILFLTAKNMEEDVVTGLSVGGDDYISKPFSIKELRARVEAHLRRERRE 121

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              A     I+     +       + P  + E  I EYL  N G+  +K +I+  I+G F
Sbjct: 122 KQNAFSISGIKFNLASKQISFNENIIPFTKSEYAICEYLALNHGQVFSKEKIYENIFG-F 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D   + + +  HI  +R K + K+G +P+++   +GY
Sbjct: 181 DGESDISAIVEHIKNIRNKFK-KIGINPIETVWGIGY 216


>gi|189499944|ref|YP_001959414.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
 gi|189495385|gb|ACE03933.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
          Length = 222

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 1/153 (0%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           + H+QVP+I ++    L   +   +SG +D + KP    E+LAR+    R         +
Sbjct: 68  KEHAQVPVIFLTAKGDLDDVIFGLESGANDYMKKPFAFEELLARIRVQLRLSGSETVMMQ 127

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +          G+   L  +E  +LEYL+ NRG    +++I   ++ +  +A + 
Sbjct: 128 AGGVEMNLAAHRVTCNGKDVSLTPKEFALLEYLLRNRGSVCTRSRIIEHVWDIHFDA-DT 186

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +V++ +++ LRKKL        +++ R +GY I
Sbjct: 187 SVIDVYVNFLRKKLDGAGCGALIETVRGVGYVI 219


>gi|310830024|ref|YP_003962381.1| two-component system protein response regulator [Eubacterium
           limosum KIST612]
 gi|308741758|gb|ADO39418.1| two-component system protein response regulator [Eubacterium
           limosum KIST612]
          Length = 239

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S  P++ +S        +    SG DD + KP   +E++ RV A  RRL+
Sbjct: 67  IEVCRAIREFSYCPVLFLSARNDDVDKILGLSSGGDDYITKPFSPKELVFRVKAQLRRLE 126

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +  R   G + +  DG      G    L  RE  IL YL  N GK ++K ++
Sbjct: 127 YNKTAEAAAGRRIRVGGLEIDVDGSRVYQDGRELGLTAREFGILLYLAENAGKIISKDRL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  ++G    AV +N +  HI  LR+K+
Sbjct: 187 YEQVWGEL-SAVCDNTIMVHIRHLREKI 213


>gi|300853659|ref|YP_003778643.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528]
 gi|300433774|gb|ADK13541.1| transcriptional regulatory protein [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GEK++E  R ++    +P+I IS   + +T ++    G DD ++KP    E+LARV A  
Sbjct: 63  GEKLIEKIRKVKT---MPVIVISAKTAQETKIEVLKLGADDFISKPFDVEEVLARVCAQL 119

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAK 170
           RR  + +N  E   I  + +        +VF       L  RE  ILE LM+   K   K
Sbjct: 120 RRYMIFSNSNEKQNILTYKNMTLDRENHKVFIRSQEVLLTIREFCILELLMSYPKKVFTK 179

Query: 171 TQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201
             +F  ++   D+ + ++N +  H+S LR K+
Sbjct: 180 ANLFEHVWK--DKFISDDNTINVHMSNLRSKI 209


>gi|238757565|ref|ZP_04618750.1| Transcriptional regulatory protein basR/pmrA [Yersinia aldovae ATCC
           35236]
 gi|238704327|gb|EEP96859.1| Transcriptional regulatory protein basR/pmrA [Yersinia aldovae ATCC
           35236]
          Length = 220

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 107/221 (48%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +G + +   +      L  +++  +  ++  L  +   VL
Sbjct: 3   LLIVEDDELLQRGVAMALTSEGYACDCAGTAAQAHSLLQTSQYSMVILDLGLPDQDGTVL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R    +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR + 
Sbjct: 63  -LRQWRRQQVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +S+N  E   + +    +   +QG+   +  +E  IL  L+   G+ + +  +   +Y  
Sbjct: 122 LSDNLVEQDDLSLNLSSQQVCLQGQPIEITPKEFAILSRLIMRAGQTINRELLQQDLYTW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+ +  N +E HI  LR+    KLG D + + R +GY ++
Sbjct: 182 NDD-LGSNTLEVHIHNLRR----KLGKDRIRTIRGIGYRLE 217


>gi|152975977|ref|YP_001375494.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024729|gb|ABS22499.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 225

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +N      I V    R   V G+   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEDNVLSAAGIDVNRLSRTVFVDGKEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G +D   ++  V++HI KLR KL +K
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209


>gi|332186443|ref|ZP_08388187.1| response regulator [Sphingomonas sp. S17]
 gi|332013426|gb|EGI55487.1| response regulator [Sphingomonas sp. S17]
          Length = 226

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---G 129
           VP+I ++        +D  ++G DD V KP+   E+ AR+ A+ R  + +   ++T   G
Sbjct: 75  VPVIMLTALSMASDKVDGLEAGADDYVVKPVAAEELNARINAVLRGRRWTVGESDTIRAG 134

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I V          G+   L   E ++L  L  + G+ + +  +   ++G ++   E NV
Sbjct: 135 DIVVSPTSFRAWRAGQPIALANLELKLLTELARHAGEVLTRAMLIERVWG-YEFEPETNV 193

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V+ +I +LR KL    G DP+++ R +GYS+
Sbjct: 194 VDVYIRRLRVKLTEAGGSDPIETVRGIGYSL 224


>gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 222

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 4/201 (1%)

Query: 23  GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79
           G++ EGF    + + E  L ++ +     +   +   G   LEL R +     + +I ++
Sbjct: 21  GLAYEGFEVYTAPDGETGLAATKKYQPHLVLLDIAMPGLDGLELCRRLHVLGDIAIIMLT 80

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD 139
               +   +     G DD V KP    E++AR+ A+ RR   S        + +    R+
Sbjct: 81  ARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVLRRHTGSQEMLSYSDLELNQATRE 140

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
               G++  L  RE  +L  LM +  + + + QI   ++G ++  +E NV+E H+  LR+
Sbjct: 141 VHRDGQLIELTTREYDLLLLLMRHPRQVLTRDQILEQVWG-YNADLETNVLEVHMGHLRQ 199

Query: 200 KLRNKLGFDPVDSKRFLGYSI 220
           KL    G   + + R +GY +
Sbjct: 200 KLEASGGSRVIQTIRGVGYVL 220


>gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 233

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +R +    P++ ++   S +  +   ++G DD + KP    E+LAR+ AI RR 
Sbjct: 60  LKVCREVRENGISTPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRRP 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N + + G + + +     E  G+   L  RE  +LE+LM +  + +++T+I   ++
Sbjct: 120 PTILNLKLQVGDLVLDTVTHHVERSGKRIDLTPREYALLEFLMRHPNQVLSRTRIVEHVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            L D   E N+V+ +I  LRKK+ N      + +   +GY I
Sbjct: 180 NL-DFYTESNIVDVYIRYLRKKIDNGFENKLIHTVHGVGYMI 220


>gi|186471094|ref|YP_001862412.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197403|gb|ACC75366.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + RA   +P++ ++   ++   +   D G DD V KPI   E+ AR+ A+ RR    
Sbjct: 63  LSSVRRAGVTMPVLVLTARDTVPDRVRGLDIGADDYVVKPIDLLELAARLRALVRRAHGQ 122

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E   + +    R     GE   +  RE  +L  LM N G+ +++ Q+  A+YG +
Sbjct: 123 PQEKLEVQDVILEPAARLVYRNGEPVTVSTREFDLLYVLMLNAGRVMSREQLEQAMYG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VE N VE HI +LR     KLG D + + R +GY +
Sbjct: 182 GREVESNTVEVHIHRLRA----KLGSDLIRTVRGVGYVL 216


>gi|110834570|ref|YP_693429.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
 gi|110647681|emb|CAL17157.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
          Length = 222

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VLE  R+      VP++ ++   S    ++   SG DD + KP H  E+L RV A+ 
Sbjct: 59  GLQVLEQWRV--EGQAVPVLILTARDSWAERIEGLQSGADDYLAKPFHPDELLLRVQALL 116

Query: 117 RRLKVSNNRAE-TGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR     N ++ T       + R     G E   L   E R+L Y M N  + ++K Q+ 
Sbjct: 117 RRTHGRANTSQLTAGTFTLDENRHSVWSGEEEIRLTGAEFRMLRYFMHNPDRLLSKGQLA 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           S +Y   +   + NV+E H+++LR+    KLG   ++++R  GY
Sbjct: 177 SHLYD-NESDRDSNVLEVHVNRLRR----KLGKTVIETRRGQGY 215


>gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 4/145 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + IR  S VP+I ++        +   + G DD V KP   +E+LARV A+ RR  
Sbjct: 65  MEVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124

Query: 120 -KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +N     P + + ++       GE    P +E  +L YL +N+ K   + Q+   +
Sbjct: 125 GEEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G +D   +   V+ HI +LR+KL 
Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKLN 208


>gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 269

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 20/207 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +   A++              ++   + +  L R+ R    VP++ +
Sbjct: 61  ALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLTVLGRLRRELPDVPVLFL 120

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134
           +   +++  +    +G DD V KP    E++AR+  + RR   ++ R+++    G + + 
Sbjct: 121 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSDSMLVVGDLTLD 180

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +    GE   L   E  +L +LM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 181 EDSHEVSRSGENIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 239

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           S LR+K+    G +P + ++R  GY I
Sbjct: 240 SYLRRKI--DAGREPMIHTRRGAGYLI 264


>gi|89108797|ref|AP_002577.1| predicted DNA-binding response regulator in two-component system
           withYedV [Escherichia coli str. K-12 substr. W3110]
 gi|90111362|ref|NP_416478.2| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. MG1655]
 gi|170081609|ref|YP_001730929.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238901170|ref|YP_002926966.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BW2952]
 gi|13878938|sp|P76340|YEDW_ECOLI RecName: Full=Probable transcriptional regulatory protein yedW
 gi|85675172|dbj|BAA15796.2| predicted DNA-binding response regulator in two-component system
           withYedV [Escherichia coli str. K12 substr. W3110]
 gi|87082012|gb|AAC75035.2| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. MG1655]
 gi|169889444|gb|ACB03151.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. DH10B]
 gi|238862252|gb|ACR64250.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BW2952]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 42  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S             L R+E ++L  L +
Sbjct: 102 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLAS 161

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217


>gi|284920956|emb|CBG34019.1| two-component response regulator [Escherichia coli 042]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   +++      P 
Sbjct: 73  LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 133 QVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + +LRKK++ +   + + + R  GY
Sbjct: 192 VLMGRLRKKIQAQYPQEVITTVRGQGY 218


>gi|255319358|ref|ZP_05360575.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262379800|ref|ZP_06072956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255303751|gb|EET82951.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262299257|gb|EEY87170.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 26/214 (12%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI--------IRAHSQVPLIGI 78
           +G     +  WL    RE +   E   I      + LP +        +R  S+VP++ +
Sbjct: 18  KGLTESGYRTWLAHDGREGLMLFEQHAIDLVILDVMLPELNGWQVIQTLRQFSEVPVLFL 77

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGP 130
           +   S+   +   + G DD + KP  + E+LARV  + RR        L+V N + +   
Sbjct: 78  TARDSVLDRVKGLELGADDYLVKPFSYIELLARVKTLLRRSSAKVVEQLQVENLKIDLLE 137

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
            +V+ D         +  L  +E  +L +L  ++G+ + +TQI S ++ + FD   + NV
Sbjct: 138 HKVYRD-------RNLIELTNKEYALLRFLAEHQGEIMTRTQIASQVWNINFD--TDTNV 188

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           V+  + +LR K+ +      + + R +GY +D N
Sbjct: 189 VDVAVRRLRAKIDDAYQPKLIHTIRGMGYKLDTN 222


>gi|253773085|ref|YP_003035916.1| transcriptional regulatory protein YedW [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324129|gb|ACT28731.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448922|gb|ACX39344.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli DH1]
 gi|315136606|dbj|BAJ43765.1| transcriptional regulatory protein YedW [Escherichia coli DH1]
          Length = 260

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S             L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|325275459|ref|ZP_08141389.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324099410|gb|EGB97326.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 8/152 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPI 131
           +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  +   R +  GP+
Sbjct: 73  LPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLGGERQQRCGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
               D R   +  +   L  RE+ +LE L+A  G+ ++K Q+ + ++GL DE    + +E
Sbjct: 133 VYDLDTRRFALGDDNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFGL-DEEASPDAIE 191

Query: 192 SHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
            +I +LRKKL  +    PV   + R LGY ++
Sbjct: 192 IYIHRLRKKLDGQ----PVAIVTFRGLGYLLE 219


>gi|311696859|gb|ADP99732.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 15/171 (8%)

Query: 61  LELPRI--------IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L LPR+        +R+   + P+I ++    L   L   ++G DD + KP    E+ AR
Sbjct: 49  LTLPRVDGLDIVKKVRSQGIETPVIILTARGDLDEKLQGLNAGADDYLTKPFAMAELKAR 108

Query: 112 VAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ RR         + G + +  D    ++  E   LPR E +IL YLM +  +   +
Sbjct: 109 IRAVTRRGAGFRTGGLQVGRLILDPDSGQLKLGTETAALPRSEFQILHYLMRHPDQVATR 168

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   +YG +++  E N +E H+  LR+    ++G   + + R +GY +D
Sbjct: 169 RRLEEQLYG-WEQGAESNALEVHVHHLRR----RVGKQTIRTVRGVGYMLD 214


>gi|199596926|ref|ZP_03210359.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258507695|ref|YP_003170446.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|199592059|gb|EDZ00133.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257147622|emb|CAR86595.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|259649042|dbj|BAI41204.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 231

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +L + +RA   + P++ ++   +L   +  F+ G DD + KP H  E++ R+ A+ +R 
Sbjct: 63  FDLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRT 122

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    GP  V  +  +  +  +   L  +E  +L YL+ N+   + K QIF  +
Sbjct: 123 GHFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G FD     +VVE ++S LRKKL+       + + R +GY
Sbjct: 183 WG-FDSDTAVSVVEVYMSNLRKKLKPMQADVWIKTIRNVGY 222


>gi|90961498|ref|YP_535414.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820692|gb|ABD99331.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 10/189 (5%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+ +  ED  AI   L+      L++ R +R     P+I ++   S+   +   D G DD
Sbjct: 38  LELALDEDWDAILLDLMLPELNGLDICRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSN----NRAETGPIRVFSDGRDPEV---QGEVFPLP 150
            + KP    E+LAR+ A+ RR+++ N    N+  T   R  +  ++  V     E+  L 
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVELENEQNGNKQTTLTYRDLTIEKENRVVRRGDEIIELT 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP- 209
           +RE  +L  LM N    +A+  +   ++G ++  +E NVV+ +I  LR K+ ++ G D  
Sbjct: 158 KREYELLLTLMENINVVLARDTLLKKVWG-YETQIETNVVDVYIRYLRNKI-DRPGEDSY 215

Query: 210 VDSKRFLGY 218
           + + R  GY
Sbjct: 216 IQTVRGTGY 224


>gi|328882443|emb|CCA55682.1| two component transcriptional regulator, winged helix family
           [Streptomyces venezuelae ATCC 10712]
          Length = 234

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S +P++ +S    +   +    SG DD + KP  H E+LARV A+ RR    +   E
Sbjct: 68  RDMSDLPVLVLSGLGDVDDRVRGLRSGADDYLVKPFAHPELLARVDALLRRSGPGSWAGE 127

Query: 128 T--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           +    +R+  + R    QG    L   E R+L+ L+ NRG+ V   Q+   ++     ++
Sbjct: 128 SVGEDLRLVPERRAALWQGSEIRLSDIEYRLLQLLVRNRGRVVTTEQLLDQVWD-DPTSI 186

Query: 186 EENVVESHISKLRKKLRNKLG---FDPVDSKRFLGYSID 221
             + V+  + +LR+KLR   G    DP+++ R LGY  D
Sbjct: 187 GRDRVKFAVLRLRRKLRTAGGPASRDPLEAIRGLGYRYD 225


>gi|268609091|ref|ZP_06142818.1| regulatory protein VanR [Ruminococcus flavefaciens FD-1]
          Length = 239

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 10/149 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I +S      + ++    G DD + KP    E+L RV A+ RR   +N+  
Sbjct: 68  IREFSDIPVIVVSAKSETHSKIELIRMGADDYITKPFDLDELLVRVEAVLRRYDGNNHTN 127

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +   I    +           V G    L  +E  IL+ ++ N  K  +K  +F +++G 
Sbjct: 128 QEQKILTCKNLSLDLTSGIATVYGNALTLTVKEYTILQLMLENPTKLWSKANLFESVWG- 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP 209
            +   ++N V+ H+S +R+KL+     DP
Sbjct: 187 ENYLSDDNTVKVHMSNIRQKLKK---LDP 212


>gi|227498372|ref|ZP_03928522.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226903834|gb|EEH89752.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 274

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 9/171 (5%)

Query: 57  GEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           GE  +E+ + IR     + +P+I ++   S    +     G DD V KP    E+++R+ 
Sbjct: 103 GESGIEILKKIRHKERTADLPVIMLTARTSEYDVVKGLTIGADDYVTKPFGILELISRIR 162

Query: 114 AIYRRLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           A+ RR       +E    GP+ +          GE   L  +E  +L YLM N G  + +
Sbjct: 163 AVLRRSHRVEKPSEMLVCGPVTLDPLKHAVSAYGEEVMLTAKEFELLHYLMMNVGIVLQR 222

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            QI  +++G F  A E   ++ HI  LR+KL    G   + + R +GY +D
Sbjct: 223 EQIMESVWG-FTYAGESRTIDMHIKSLRQKLGE--GGQIIKTIRGVGYRLD 270


>gi|150388130|ref|YP_001318179.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149947992|gb|ABR46520.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 216

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 97/201 (48%), Gaps = 13/201 (6%)

Query: 26  LEGFNSLEF---EEWLQ--SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80
           + G+ +LE    EE LQ  ++ + D+  ++  L  +    L LP+I++ +  +P I ++ 
Sbjct: 23  MAGYETLEACDGEEGLQYLNNEKIDLVLLDVMLPQQDGYTL-LPKILKKN--IPTIMLTA 79

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140
              L+  +   + G DD V KP    E+LARV  + RR      +     I +  D    
Sbjct: 80  KDRLKDKVKGLEMGADDYVTKPFEAMELLARVKCVLRRSDKEKTKIVMDDIEICLDQWKV 139

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
              G+   L  +E  +L  L+ N+G  +++ ++   ++G ++       V+ HI    ++
Sbjct: 140 LKDGKEVDLTYKEFDLLRLLIENKGNVMSRDRLLELVWG-YEFEGNTRTVDMHI----QR 194

Query: 201 LRNKLGFDPVDSKRFLGYSID 221
           LRNK+G D + +   +GY ++
Sbjct: 195 LRNKIGADKIKTIYKVGYRME 215


>gi|298293994|ref|YP_003695933.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296930505|gb|ADH91314.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA  +   +P++ ++        +    +G DD V KP    E++ARV A+ R
Sbjct: 62  IELCRRLRARPETERMPILMLTARGEETERVRGLATGADDYVVKPFSVPELVARVRALLR 121

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K  +       G I +  + +     G    L   E R+LE+LM + G+  ++ Q+  
Sbjct: 122 RAKPEHISTLLRAGDIELDRETKRVHRAGRELHLGPTEFRLLEFLMQSPGRVYSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  ++E  V+ H+ +LRK L      DP+ + R  GYS +
Sbjct: 182 GVWGQ-DVYIDERTVDVHVGRLRKALNRPRQPDPIRTVRGSGYSFN 226


>gi|182412431|ref|YP_001817497.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839645|gb|ACB73897.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 248

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 25/224 (11%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED----VSAIEAFLIGKGEKVLELP 64
            LV+ GY  L   DG           E+ ++   RE     V  IE   +G G  VL   
Sbjct: 33  CLVRQGYRVLEAADG-----------EQAMERIVREKPALVVLDIEMPRVG-GLAVLS-- 78

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+  + +  P++ +S    +   ++    G DD + KP +  E+LAR+ A+ RR   +  
Sbjct: 79  RLRESGNLTPVLIVSSRSHVDDRVNGLSLGADDYLTKPFNQEELLARIRALLRRQAATET 138

Query: 125 ---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R + G + V  D R    +G    L R E  IL+ L    G  V++ ++F  ++G +
Sbjct: 139 PIQRLQFGDVEVALDKRTAVCKGRTTRLSRTECAILDLLARYAGTPVSRERLFDLVWG-Y 197

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
               E   +++H+ +LRKK+ +  G +P  + +   +GY +D +
Sbjct: 198 TYLPETRTLDTHVWRLRKKIGDT-GEEPRWIKNVPGVGYQLDCS 240


>gi|297582644|ref|YP_003698424.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141101|gb|ADH97858.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR+ S VP+I ++     +  +     G DD V KP    E++ARV A+ RR K 
Sbjct: 62  EVCQDIRSFSDVPIIMLTARDGKEDVVKGLRYGADDYVTKPFDEGELMARVDALLRRTKR 121

Query: 122 SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  A  G   +  +GR+  +  +GE   L  +E   +   + N G+  ++ +I    +G
Sbjct: 122 QDEAACGG---LVWNGRERALSFEGEAIHLTPKEFDTIGLFLRNPGRAFSREEIIETAWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L     E   V++HI  +R+K++ K GF PV+   K   G    W
Sbjct: 179 L-GSGTEGRTVDTHIRNMREKIK-KSGF-PVEDHLKTVWGKGYKW 220


>gi|146280822|ref|YP_001170975.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
 gi|145569027|gb|ABP78133.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
 gi|327479090|gb|AEA82400.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri DSM 4166]
          Length = 229

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 101/213 (47%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  +       + + G++ LE E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIREMIVV-----ALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++     +  P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR    ++ A   PI +     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRATPVDSEA---PIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRSQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|120554212|ref|YP_958563.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120324061|gb|ABM18376.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 221

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 21/227 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D A + +       DDG +++   +L F E    +   D+  ++  L  G G   L
Sbjct: 4   LLVEDTAGLGEAVRDQIADDGHAVDWVQTLRFAEASIRTTAYDLILLDLMLPDGHGFGFL 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IRA     P+I ++    +   ++  ++G DD + KP    E+ ARVAA+ RR  
Sbjct: 64  ---RTIRATGITTPVIILTARDQVSDRIEGLNAGADDYLVKPFDLSELSARVAAVARRY- 119

Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIF 174
               R    PI     +  D  D  +     P  L  RE  + E  +   G  ++++Q+ 
Sbjct: 120 ----RGNPSPIIQVGELMIDLGDHRISRNGLPVELTAREWALFEGFIQRPGMLLSRSQLE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +Y  F   +E N +E ++S+LRK    KLG D + + R +GY ++
Sbjct: 176 DRLYA-FGAEIESNTIEVYVSRLRK----KLGRDAIVTVRGMGYRLE 217


>gi|22537765|ref|NP_688616.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           2603V/R]
 gi|25011712|ref|NP_736107.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           NEM316]
 gi|76788698|ref|YP_330242.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909]
 gi|76799420|ref|ZP_00781570.1| CsrR [Streptococcus agalactiae 18RS21]
 gi|77405803|ref|ZP_00782887.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B]
 gi|77408493|ref|ZP_00785231.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1]
 gi|77411918|ref|ZP_00788249.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           CJB111]
 gi|77414229|ref|ZP_00790391.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515]
 gi|22534656|gb|AAN00489.1|AE014265_18 DNA-binding response regulator CsrR [Streptococcus agalactiae
           2603V/R]
 gi|24413252|emb|CAD47331.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563755|gb|ABA46339.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909]
 gi|76585229|gb|EAO61837.1| CsrR [Streptococcus agalactiae 18RS21]
 gi|77159718|gb|EAO70867.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515]
 gi|77162015|gb|EAO72995.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           CJB111]
 gi|77172935|gb|EAO76066.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1]
 gi|77175590|gb|EAO78375.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B]
 gi|319745623|gb|EFV97924.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 229

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++A     ++ ++   S+   +   D G DD + KP    E+LARV AI+RR ++
Sbjct: 63  EITRRLQAEKTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEI 122

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E G    F D       R      E   L +RE  +L  LM N  + + + ++  
Sbjct: 123 ETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEISLTKREFDLLNVLMTNMNRVMTREELLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D A E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 HVWK-YDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVI 226


>gi|329955620|ref|ZP_08296528.1| putative DNA-binding response regulator [Bacteroides clarus YIT
           12056]
 gi|328526023|gb|EGF53047.1| putative DNA-binding response regulator [Bacteroides clarus YIT
           12056]
          Length = 225

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 2/127 (1%)

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSD 136
           IS   SL   +D  + G DD + KP H  E+ AR+ ++ RR +   +   T G + ++ D
Sbjct: 78  ISAKDSLDDKVDGLELGADDYLTKPFHLAELNARIKSLIRRRQTQGDVTVTVGNLLLYPD 137

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHIS 195
            R  EV G    L R+E  +L Y + N  + + K  +  +++G   D+    + + S + 
Sbjct: 138 KRQAEVDGAPLQLNRKEFDLLYYFVVNPNRVINKMSLAESVWGDNIDQVDSLDFIYSQVK 197

Query: 196 KLRKKLR 202
            LRKKL+
Sbjct: 198 NLRKKLK 204


>gi|291549838|emb|CBL26100.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 17/173 (9%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE VLE    IR    +P+I ++   SL   ++   SG DD + KP   RE+LARV    
Sbjct: 62  GEAVLEE---IRKKGNLPVIVLTAKDSLDEKVEVLTSGADDYITKPFEIREVLARVQVQL 118

Query: 117 RRLKVSNNRAETGPIRVFSD---GRDP---EVQGEVFP-LPRRERRILEYLMANRGKRVA 169
           R        AE      F D    RD    E+ G++ P + ++E  ILE L+ N  +  +
Sbjct: 119 RH--KEEKEAEEQHTLSFKDMLLNRDTFQVEIDGKILPKITKQEFAILELLLRNPKQVFS 176

Query: 170 KTQIFSAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           K  IF   +   DE    E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 177 KEDIFEYAW---DEPYMGETKTLDVHISNIRKKIKQVTSEEYIETVWGIGYRL 226


>gi|209883802|ref|YP_002287659.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
 gi|209871998|gb|ACI91794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
          Length = 234

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA     Q+P+I ++        +    +G DD + KP    E+LARV  + R
Sbjct: 62  IELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   S  R  +    G I +  + R     G    L   E R+LE+ + + G+  ++ Q+
Sbjct: 122 R--ASPERVASVLIYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 180 LDGVWG-RDIYIDERTVDVHIGRLRKLLNPGEEQDPIRTVRGAGYALD 226


>gi|218901847|ref|YP_002449681.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539651|gb|ACK92049.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 225

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLCHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220


>gi|49081822|gb|AAT50311.1| PA0463 [synthetic construct]
          Length = 230

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 107/227 (47%), Gaps = 16/227 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +       +  EGF +       ++ A ++    +  ++  G  V+
Sbjct: 4   ILIVEDEAAIADTLLY-----ALQAEGFATTWVTLAGEALALQERQPADLLILDVGLPVI 58

Query: 62  ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E  + +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R
Sbjct: 59  SGFEACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKR 118

Query: 119 L----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +          A +GP +V  +      +     L R E R+L+ L+    +  ++ Q+ 
Sbjct: 119 MAPRPAALEEAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYS 219
            A+ G+  EA  E  ++SHI  LR KLR  N+ G + + + R LGYS
Sbjct: 179 DAL-GVASEAGYERNIDSHIKSLRAKLRQVNERG-EAIQTHRGLGYS 223


>gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
 gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
          Length = 231

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 109/224 (48%), Gaps = 26/224 (11%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEKVLELPR 65
           R+L+ +GY  +   DG           EE L+  +  R D++ ++  +  K    L++ R
Sbjct: 18  RSLIFNGYTVILATDG-----------EEALKLIAEERPDLAILDVMMPKKDG--LDVCR 64

Query: 66  IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
            +R+H   +P++ ++   S++  +   D+G DD + KP    E+LAR  +++RR  + + 
Sbjct: 65  ELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAARPAI 124

Query: 124 NRAET-GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ET  P+R      +PE + +VF       L R E  +LE LM N  K +++  I   
Sbjct: 125 QEGETREPLRFEDLTLNPETR-DVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTILEE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E +I  LR+K         + + R +GY++
Sbjct: 184 VWG-YDFPTSGNALEVYIGYLRRKTEANNETRLIHTVRGVGYAL 226


>gi|120556126|ref|YP_960477.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325975|gb|ABM20290.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 221

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 21/227 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D A + +       DDG +++   +L F E    +   D+  ++  L  G G   L
Sbjct: 4   LLVEDTAGLGEAVRDQIADDGHAVDWVQTLRFAEASIRTTAYDLILLDLMLPDGHGFGFL 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IRA     P+I ++    +   ++  ++G DD + KP    E+ ARVAA+ RR  
Sbjct: 64  ---RTIRATGITTPVIILTARDQVSDRIEGLNAGADDYLVKPFDLSELSARVAAVARRY- 119

Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIF 174
               R    PI     +  D  D  +     P  L  RE  + E  +   G  ++++Q+ 
Sbjct: 120 ----RGNPSPIIQVGELMIDLGDHRISRNGLPVELTAREWALFEGFIQRPGMLLSRSQLE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +Y  F   +E N +E ++S+LRK    KLG D + + R +GY ++
Sbjct: 176 DRLYA-FGAEIESNTIEVYVSRLRK----KLGRDAIVTVRGMGYRLE 217


>gi|77408155|ref|ZP_00784901.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77173255|gb|EAO76378.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 3/152 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAET 128
           SQV ++ ++   +++  +   D G DD + KP    E++AR+ A+ RR   +VS++  + 
Sbjct: 71  SQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTNRQVSSDDIQI 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             I +    +       +  L  +E  +LEYL  +R + +++ QI   ++  +D   E N
Sbjct: 131 QDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVWD-YDYYGESN 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++  I  LR+KL N      + +KR LGY I
Sbjct: 190 IIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221


>gi|16129093|ref|NP_415648.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. MG1655]
 gi|89107976|ref|AP_001756.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. W3110]
 gi|157160654|ref|YP_001457972.1| DNA-binding transcriptional regulator PhoP [Escherichia coli HS]
 gi|170020477|ref|YP_001725431.1| DNA-binding transcriptional regulator PhoP [Escherichia coli ATCC
           8739]
 gi|170080781|ref|YP_001730101.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. DH10B]
 gi|188494074|ref|ZP_03001344.1| DNA-binding response regulator PhoP [Escherichia coli 53638]
 gi|238900384|ref|YP_002926180.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli BW2952]
 gi|256023172|ref|ZP_05437037.1| DNA-binding transcriptional regulator PhoP [Escherichia sp.
           4_1_40B]
 gi|300906951|ref|ZP_07124623.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300917903|ref|ZP_07134536.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300949478|ref|ZP_07163476.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300955536|ref|ZP_07167898.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|301029561|ref|ZP_07192639.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301306074|ref|ZP_07212152.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301644548|ref|ZP_07244541.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307137765|ref|ZP_07497121.1| DNA-binding transcriptional regulator PhoP [Escherichia coli H736]
 gi|312971266|ref|ZP_07785444.1| transcriptional regulatory protein phoP [Escherichia coli 1827-70]
 gi|331641674|ref|ZP_08342809.1| transcriptional regulatory protein PhoP [Escherichia coli H736]
 gi|130126|sp|P23836|PHOP_ECOLI RecName: Full=Transcriptional regulatory protein phoP
 gi|147254|gb|AAA24377.1| phoP [Escherichia coli]
 gi|216608|dbj|BAA14390.1| PhoP protein [Escherichia coli K-12]
 gi|1651558|dbj|BAA35952.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K12 substr. W3110]
 gi|1787375|gb|AAC74214.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. MG1655]
 gi|157066334|gb|ABV05589.1| DNA-binding response regulator PhoP [Escherichia coli HS]
 gi|169755405|gb|ACA78104.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169888616|gb|ACB02323.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. DH10B]
 gi|188489273|gb|EDU64376.1| DNA-binding response regulator PhoP [Escherichia coli 53638]
 gi|238860868|gb|ACR62866.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli BW2952]
 gi|260449731|gb|ACX40153.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|299877556|gb|EFI85767.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300317575|gb|EFJ67359.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300401298|gb|EFJ84836.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300414893|gb|EFJ98203.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300451114|gb|EFK14734.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300838646|gb|EFK66406.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301077130|gb|EFK91936.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|309701454|emb|CBJ00758.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310336468|gb|EFQ01654.1| transcriptional regulatory protein phoP [Escherichia coli 1827-70]
 gi|315135762|dbj|BAJ42921.1| DNA-binding transcriptional regulator PhoP [Escherichia coli DH1]
 gi|315252615|gb|EFU32583.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|315616012|gb|EFU96638.1| transcriptional regulatory protein phoP [Escherichia coli 3431]
 gi|323937870|gb|EGB34134.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323942600|gb|EGB38767.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|331038472|gb|EGI10692.1| transcriptional regulatory protein PhoP [Escherichia coli H736]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   +++      P 
Sbjct: 73  LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 133 QVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + +LRKK++ +   + + + R  GY
Sbjct: 192 VLMGRLRKKIQAQYPQEVITTVRGQGY 218


>gi|238028504|ref|YP_002912735.1| DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237877698|gb|ACR30031.1| DNA-binding response regulator [Burkholderia glumae BGR1]
          Length = 225

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 15/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L++D  ++ +G       DG +++     E           D+  ++  L  + G +V
Sbjct: 8   ILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLPKRDGVEV 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R  R H+ +P++ I+   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 68  LRTARA-RGHA-LPVLIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRALIRR-- 123

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   
Sbjct: 124 -QAGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 183 MYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 221


>gi|215487165|ref|YP_002329596.1| transcriptional regulatory protein YedW [Escherichia coli O127:H6
           str. E2348/69]
 gi|312967163|ref|ZP_07781381.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
 gi|215265237|emb|CAS09628.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O127:H6 str. E2348/69]
 gi|312288627|gb|EFR16529.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 42  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 102 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLAS 161

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217


>gi|50085985|ref|YP_047495.1| transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531961|emb|CAG69673.1| transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 226

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 14/168 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  + VP++ IS    L+  ++  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  MQVLKQIRQKTGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTN 120

Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            S + +     +V S+G             QG+   L  RE  IL  LM +  K  +K  
Sbjct: 121 -SKDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFSKAN 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +Y  FD  V  N +E +I      LR+KLG + + + R LGY +
Sbjct: 180 LEDKLYD-FDSEVTSNTIEVYI----HHLRSKLGKNFIRTIRGLGYRL 222


>gi|332639095|ref|ZP_08417958.1| two component transcriptional regulator, winged helix family
           protein [Weissella cibaria KACC 11862]
          Length = 220

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           LP +I A  QVP+I ++    +   +     G DD + KP H   + ARV  + RR    
Sbjct: 64  LPYVIDA--QVPVIFLTAKTEVDDVVQGLQLGADDYITKPFHLEVLKARVETVLRRTDGQ 121

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + V    +  +  G+   L  +E  +L Y + N+G  + +  ++ A++   
Sbjct: 122 TDEILHYGELTVNVPQQTVQRDGQTIDLTHKEFELLVYFIRNQGVNLTRDALYQALWDFA 181

Query: 182 DEAVEENVVESHISKLRKKLR 202
           D+A +   V+ H+ +LRKKL+
Sbjct: 182 DDANDTRTVDLHVQRLRKKLQ 202


>gi|308205569|gb|ADO19044.1| two component transcriptional regulator [Nostoc flagelliforme str.
           Sunitezuoqi]
          Length = 232

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 18/200 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L ++GY      DG S          E  Q+ +  D+  ++  L GK    LE+ + +
Sbjct: 18  RLLTREGYTVDAAYDGTS--------GNEHAQTGSY-DLLILDWMLPGK--TGLEICQQL 66

Query: 68  RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R   +  P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR        
Sbjct: 67  RRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSGSQTYET 126

Query: 127 ETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            TG + V     D E      QG +  L ++E ++L+Y M + G+ +   QI   ++   
Sbjct: 127 TTGRLIVADLELDCENQVAYRQGRIIELSQKESQLLQYFMEHTGQLMTHAQIMENLWQ-E 185

Query: 182 DEAVEENVVESHISKLRKKL 201
           +E    NV+ + I  LR+K+
Sbjct: 186 EEQPSSNVIAALIRLLRRKI 205


>gi|312884061|ref|ZP_07743775.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368280|gb|EFP95818.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 218

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 6/150 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GP 130
           + P++ +S    L   +   + G DD + KP    E+LAR+ A+ RR   S +   T   
Sbjct: 72  KTPVLILSARDELNDRVYGLNHGADDYLVKPFQLEELLARMGALIRRSAGSADDIITVRD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +        +  E   L   E +IL+YL+ N G+ ++KTQI   ++G +DE+   N +
Sbjct: 132 VSMSIHSHKVSIAEEEINLTPNEFKILQYLITNAGRVLSKTQILQNMHG-WDESAGLNSI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E HI  LRKK+        +++ R +GY I
Sbjct: 191 EVHIHNLRKKMPKG----TIENIRGVGYII 216


>gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
 gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
          Length = 238

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 11/118 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK---VSNNR-------AETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LARV A+ RR     V++++        E G +RV+ +  +  +Q
Sbjct: 96  GADDYMTKPFSPREVLARVKAVLRRFTQNVVADDKDVAQEKMYEFGQLRVYPERFEVFLQ 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            E      +E  +L YL+ N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+
Sbjct: 156 DEALEFTPKEFELLIYLLENKNRVLTRDQLLSAVWK-YDFAGDTRIVDVHISHLRDKI 212


>gi|296271218|ref|YP_003653850.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296094005|gb|ADG89957.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 229

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 6/169 (3%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           EW  + +R D+  ++  L    + +L   R++ A   VP++ ++   S    +     G 
Sbjct: 41  EWQANRSRPDLVLLDVML-PDIDGLLLAERLVHAIGPVPVVFVTARDSTADKVAGLARG- 98

Query: 96  DDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           DD V KP    E++AR+ A+ RR +       R     + +  + R+    G    L   
Sbjct: 99  DDYVTKPFRMEELIARIQAVLRRSRGWDAPRPRLTVADLELDEETREVWRAGRPIRLSPT 158

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           E R+L Y M N+G+ ++K QI   ++  +D   + N+VES++S LR+K+
Sbjct: 159 EFRLLRYFMINQGRVLSKAQILDHVWN-YDFRGDANIVESYVSYLRRKI 206


>gi|190573011|ref|YP_001970856.1| putative phosphate regulon two-component response regulator
           transcriptional regulator [Stenotrophomonas maltophilia
           K279a]
 gi|254521224|ref|ZP_05133279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Stenotrophomonas sp. SKA14]
 gi|190010933|emb|CAQ44542.1| putative phosphate regulon two-component response regulator
           transcriptional regulatory protein [Stenotrophomonas
           maltophilia K279a]
 gi|219718815|gb|EED37340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Stenotrophomonas sp. SKA14]
          Length = 229

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L+L R  R  +   +VP+I ++        +   ++GVDD V KP   RE+LAR+ 
Sbjct: 58  GTSGLDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIR 117

Query: 114 AIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR +    +     GPIR+           +  P+   E R+L + M +  +   + 
Sbjct: 118 AVMRRAREDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRA 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           Q+   ++G     VEE  ++ HI +LRK L      + V + R  GY
Sbjct: 178 QLLDHVWG-GSVYVEERTIDVHIRRLRKTLEPFNAENMVQTVRGAGY 223


>gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 4/145 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + IR  S VP+I ++        +   + G DD V KP   +E+LARV A+ RR  
Sbjct: 65  MEVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124

Query: 120 -KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +N     P + + ++       GE    P +E  +L YL +N+ K   + Q+   +
Sbjct: 125 GEEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G +D   +   V+ HI +LR+KL 
Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKLN 208


>gi|89091823|ref|ZP_01164778.1| Transcriptional regulatory protein CpxR [Oceanospirillum sp. MED92]
 gi|89083558|gb|EAR62775.1| Transcriptional regulatory protein CpxR [Oceanospirillum sp. MED92]
          Length = 235

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 11/200 (5%)

Query: 28  GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87
             N+ E  E L+ S R  +  ++  + G+    LEL + IR   Q+P+I ++        
Sbjct: 33  AHNADEACEQLKRSERFALMILDVMMPGRTG--LELLQQIRPKVQIPVIMLTGRGEDIDR 90

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-------VSNNRAETGPIRVFSDGRDP 140
           +   + G DD ++KP + RE+LAR+ A+ RR +         ++  E   + +    R+ 
Sbjct: 91  ILGLEMGADDYLSKPCNPRELLARIRAVLRRAEPQQRTTLFPDSLVEHAGVTLDPGLREV 150

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
            + GE+  L   E  +L YL+AN G  + K Q+   +      A  +  ++ H+S++R+K
Sbjct: 151 RINGELLELTGTEFNVLAYLIANAGSVLEKEQLTELVLH-RKLAAYDRAIDVHVSRVRQK 209

Query: 201 LRNKLG-FDPVDSKRFLGYS 219
           L   L   + + + R +GY 
Sbjct: 210 LAKHLSDAELIKTIRGVGYQ 229


>gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 226

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 21/171 (12%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LEL R +RA  + +P++ ++     Q  +   ++G DD + KP    E+LARV A+ RR 
Sbjct: 60  LELIRALRADGRTLPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALLRRA 119

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+      +T     + DG   E+ G  F       R+L Y+M ++G  ++KT
Sbjct: 120 GGWADPVLRCPPLALDTRSQTAWRDGARIELTGSEF-------RLLHYMMLHQGAVLSKT 172

Query: 172 QIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   +Y    +A E   NV+E  I +LR+KL       P+++ R  GY +
Sbjct: 173 RLEEHLY---PDAAEHDSNVMEVFIRRLRRKLDPDGTLQPIETLRGRGYRL 220


>gi|309776825|ref|ZP_07671799.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915573|gb|EFP61339.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + R +R  S +P+I ++   S    L   + G DD V KP + + +LAR+A + +R    
Sbjct: 63  ICREVRKSSDMPIIIVTSRDSDMDELISMNLGADDFVTKPYNLQILLARIARVLQRTYEH 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N      I +         +G    L + E RI+  L  N+ K V++ ++   ++  
Sbjct: 123 ASSNILTIHDIALDISKSTLTWKGNSIDLTKNELRIMHCLFQNKNKIVSRNELMQHMWDC 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V++N +  +I++LRKKL      D + +KR +GY I
Sbjct: 183 -DLFVDDNTLTVNINRLRKKLEYLRLDDLIQTKRGMGYII 221


>gi|326792918|ref|YP_004310739.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543682|gb|ADZ85541.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 232

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DD+ +V    + L  +   +L+ +N +E    L++  +++V  I   ++      
Sbjct: 5   VLVCDDDKLIVNSIVLHLQKEGYRTLKAYNGVEA---LEAIEKQEVHLILMDIMMPQLDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L     IR    +P+I +S        +   + G DD + KP +  E+LARV +  RR  
Sbjct: 62  LSATLKIRQEKNIPIIILSAKSEDTDKIAGLNLGADDYITKPFNTFELLARVRSQLRRYT 121

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               ++ +     TG + + +      V GE+  L   E +IL+YLM N G+ ++  QI+
Sbjct: 122 KLGAMQQTPQLLMTGGLCMDTGANTVYVDGELVRLTPTEYKILQYLMINMGQVLSMHQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++     A  EN V  HI +LR+K+
Sbjct: 182 ENVWHDTPFA-PENTVAVHIRRLREKI 207


>gi|238797369|ref|ZP_04640869.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC
           43969]
 gi|238718800|gb|EEQ10616.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC
           43969]
          Length = 220

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G S++ F   + ++ L + A     A+   L   G   L
Sbjct: 3   ILLIEDDKLIGDGIKAGLIKMGFSVDWFT--DGQQGLSALASAPYDAVVLDLSLPGMDGL 60

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRR 118
           ++ R  R   H + P++ ++   +LQ  +     G DD + KP    E++AR+ A I RR
Sbjct: 61  DILRTWRRNGHDE-PVLILTARDALQERVAGLQQGADDYLCKPFALIEVVARLQALIRRR 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G I +         QGE   L  +E  +LE L+ N G+ + ++ I   IY
Sbjct: 120 YGQAQTVLTHGSISLDPINLSVTHQGEPLYLKPKEFALLELLLRNEGRVLPRSLIEEKIY 179

Query: 179 GLFDEAVEENVVESHISKLRKK 200
             +D+ V  N +E HI  LRKK
Sbjct: 180 N-WDDEVSSNAIEVHIHHLRKK 200


>gi|332662904|ref|YP_004445692.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331718|gb|AEE48819.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 7/133 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---G 129
           +P++ ++   S +  +   D+G DD + KP    E+ ARV A+ RR   SN  A+     
Sbjct: 74  IPILMLTALGSTEDIVKGLDNGADDYMVKPFRIPELQARVRALLRR-SASNTTAQISRLA 132

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +  D ++     E   L   E R+LEYLM+++G+  A+ +I   ++G+ FD     N
Sbjct: 133 DLVLNHDTKEVSRNNESIKLTATEFRLLEYLMSHKGRLKARMEILEEVWGINFDPGT--N 190

Query: 189 VVESHISKLRKKL 201
           VV+ ++S LR K+
Sbjct: 191 VVDVYVSYLRNKI 203


>gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 230

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 16/207 (7%)

Query: 29  FNSLEFEE--WLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPL 75
           F  LEFE   +  +   + +S ++  L G  + VL           E+ + IR HS +P+
Sbjct: 18  FLQLEFEHEGYTVTVTYDGLSGLKEALEGDYDLVLLDIMLPGIDGFEVLKKIREHSDIPV 77

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135
           I ++    ++  ++  D G DD V KP    E+ ARV A  R+ K    +       +  
Sbjct: 78  IMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKPHLKKDVLRYSDITM 137

Query: 136 DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
           D    EV+  G    L ++E  +LE+L+ N    + + +I   ++G +D   + N+V+ +
Sbjct: 138 DLTTHEVRRAGIKIELTKKEFDLLEFLIKNANIALTREKILECVWG-YDYYGDTNIVDVY 196

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  LR K+ +      + + R +GY++
Sbjct: 197 IRYLRSKIDDPFDRKLIHTIRGVGYTL 223


>gi|299134022|ref|ZP_07027215.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298590769|gb|EFI50971.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 234

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA     Q+P+I ++        +    +G DD + KP    E+LARV  + R
Sbjct: 62  IELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R       N    G I +  + R     G    L   E R+LE+ + + G+  ++ Q+  
Sbjct: 122 RASPERLANVLVYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 182 GVWG-RDIYIDERTVDVHIGRLRKLLNPGEEQDPIRTVRGAGYALD 226


>gi|256826788|ref|YP_003150747.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582931|gb|ACU94065.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 271

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 16/225 (7%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA-IEAFLIGKGEKVL---ELP--- 64
           K+  I +  DD    E   +L           ED SA +E+ L      +L    LP   
Sbjct: 4   KENNIYIVEDDRTMRENLRTLLEHNGYIVQVLEDFSAPVESILAASANLILLDLNLPHAD 63

Query: 65  -----RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
                R IR  S +P+I ++   S    L   + G DD + KP + + +LA VA++ +R 
Sbjct: 64  GRFICREIRRESNIPIIVVTGDDSDLDELICLNFGADDFIAKPYNPQVLLAHVASVLKRT 123

Query: 120 KVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             S         G + + ++       G+   L + E RIL  LM N GK V + +I   
Sbjct: 124 ASSVATPAHHTVGGVSLDAECCRVSFAGKQADLTKNELRILSLLMRNAGKIVPRERIQEE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   DE +++N +  ++S LR  L      D + +KR +GYS +
Sbjct: 184 LWN-SDEFIDDNTLTVNVSHLRHTLSTIGADDFIRTKRGIGYSFE 227


>gi|255036521|ref|YP_003087142.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254949277|gb|ACT93977.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 225

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 7/145 (4%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +RA     P++ ++   ++   LD F++G DD + KP   RE++AR+  + +R  
Sbjct: 61  DLAKQLRADGLTTPILFLTALGTIDDKLDGFEAGGDDYLVKPFEFRELIARIKVLSQRNS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ---GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V    ++   +       D +V    G    L  +E  +LEYLM NRG+ V++  I   +
Sbjct: 121 VREQSSQVLTLADLELNLDEKVARRGGNRIDLTAKEFALLEYLMRNRGRVVSRVDIAEQV 180

Query: 178 YGL-FDEAVEENVVESHISKLRKKL 201
           + + FD     NV++ +I+ LRKK+
Sbjct: 181 WDIRFDTGT--NVIDVYINFLRKKV 203


>gi|226312547|ref|YP_002772441.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095495|dbj|BAH43937.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RRLKVS 122
           R IR  S VP++ ++       TL  F+ G DD V KP     +LAR   +   R++   
Sbjct: 66  RRIRKVSNVPILMLTARSDEDDTLLGFELGADDYVVKPCSPPILLARSKRLLENRQMHEP 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +    G I +    R   ++G+ + L   E  IL YLM N+G  +++ Q+   I+G +D
Sbjct: 126 GDMLSGGGITIHLPSRTVSIEGKNYSLTHTEYEILAYLMKNKGIILSREQLIIKIWG-YD 184

Query: 183 EAVEENVVESHISKLRKKL 201
              E+  + SH+  LR KL
Sbjct: 185 FIGEDRTLSSHVRNLRSKL 203


>gi|199597535|ref|ZP_03210964.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199591558|gb|EDY99635.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 225

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 11/158 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE VL     IR  SQVP++ ++       T+     G +D + KP    E+LAR+    
Sbjct: 60  GESVLT---TIRKTSQVPVLVLTAIQEKAKTVALLQQGANDYLTKPFDIDELLARIQVQL 116

Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R++      +N++ + G I++        V  +   LP++E  +L  +M +  +   K+Q
Sbjct: 117 RQVSGQPITTNDQLKVGEIQLDPKRHVVTVNQQTLTLPKKEYDMLALMMRDPHQVFDKSQ 176

Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           ++  ++G  F  A  +N +  HIS LR K+ N+L  DP
Sbjct: 177 LYEHVWGEPFLNA--DNTLNVHISNLRTKI-NELAHDP 211


>gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 4/145 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + IR  S VP+I ++        +   + G DD V KP   +E+LARV A+ RR  
Sbjct: 65  MEVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124

Query: 120 -KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +N     P + + ++       GE    P +E  +L YL +N+ K   + Q+   +
Sbjct: 125 GEEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G +D   +   V+ HI +LR+KL 
Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKLN 208


>gi|163815933|ref|ZP_02207303.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759]
 gi|158448743|gb|EDP25738.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G+G   L+  R +R  ++VP+I ++   +    ++ F +G DD + KP     +  R+ A
Sbjct: 57  GRG---LDYCRELRKSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEA 113

Query: 115 IYRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           + RR +     V   R   G + V  +     +  E   L   E RILE L+ N+G+ + 
Sbjct: 114 VLRRSENAPDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLT 173

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +  I   I+   +  V+EN +  HI +LR+K+    G
Sbjct: 174 RDMIIQKIWDDNENYVDENTLNVHIRRLRQKIEKDAG 210


>gi|194364602|ref|YP_002027212.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347406|gb|ACF50529.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 229

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L+L R  R  +   +VP+I ++        +   ++GVDD V KP   RE+LAR+ 
Sbjct: 58  GTSGLDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIR 117

Query: 114 AIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR +    +     GPIR+           +  P+   E R+L + M +  +   + 
Sbjct: 118 AVMRRAREDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRA 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           Q+   ++G     VEE  ++ HI +LRK L      + V + R  GY
Sbjct: 178 QLLDHVWG-GSVYVEERTIDVHIRRLRKTLEPFNAENMVQTVRGAGY 223


>gi|268680083|ref|YP_003304514.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
 gi|268618114|gb|ACZ12479.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
          Length = 233

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S+ P+I +S     +  +   D G DD V KP    E+LARV +  RR++ +  R 
Sbjct: 67  VRKQSKTPIIVLSARNDEKEIIAALDLGADDYVTKPFSTSELLARVRSTLRRVQATTARD 126

Query: 127 ETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 +  D    EVQ  G +  L   E  +L YLM N  K +   QI   ++G+  + 
Sbjct: 127 MLTCKDLTIDFTKKEVQLKGALLKLTPTEYTLLRYLMQNANKVLPHQQILKEVWGVGYQN 186

Query: 185 VEENVVESHISKLRKKLRN 203
            E   + ++I+ LRKK+ +
Sbjct: 187 -EMQYLRTYINSLRKKIED 204


>gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 11/147 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IRA    P+I I+   S+   +   D+G DD + KP    E+LAR+ A++RR+ 
Sbjct: 62  MEVCRRIRAAKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVH 121

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +     G +  F D       R  +       L +RE  +L   M N    + +  + 
Sbjct: 122 PESG----GQVLTFKDLVVDMQARTVKKGNAFIELTKREYDLLVAFMQNINVVLTRDLLL 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G FD  VE NVV+ ++  LR+KL
Sbjct: 178 EKVWG-FDTEVETNVVDVYVRYLRQKL 203


>gi|150018187|ref|YP_001310441.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904652|gb|ABR35485.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 218

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I++ + VP+I ++    L   +    SG +D + KP    E+LAR+  + RR   
Sbjct: 63  ELMKRIKSLN-VPVIFLTAKNGLADKITGLKSGAEDYIVKPFETVELLARIEIVLRRYSK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +NN  E   ++++ D R  +   E   L  +E  ++  L+ N+   +++  +   I+G +
Sbjct: 122 NNNCIEFKRLKIYEDERIIKNGDETIDLTLKEFELILLLVKNKNMALSREYLLEKIWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKL 201
           +   E   +++HI K+RKKL
Sbjct: 181 EYMGETRTIDTHIQKIRKKL 200


>gi|309800488|ref|ZP_07694642.1| DNA-binding response regulator [Streptococcus infantis SK1302]
 gi|308115883|gb|EFO53405.1| DNA-binding response regulator [Streptococcus infantis SK1302]
          Length = 214

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 11/153 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR +
Sbjct: 41  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTE 100

Query: 121 VS---NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           ++   N   ET       G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 101 LASADNQEPETKLQSLQIGDLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITR 160

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 161 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 192


>gi|296454605|ref|YP_003661748.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296184036|gb|ADH00918.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 258

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +     P++ ++     Q  +     G DD V KP    E++AR+ AI RR   +  
Sbjct: 86  RIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TRE 142

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + E  PI       +  D  D    G+   L   E ++L YLM N G+ ++K QI   ++
Sbjct: 143 QVEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLR---------NKLGFDP-VDSKRFLGYSI 220
             +D   +  +VES+IS LRKK+           K    P +++KR +GY I
Sbjct: 203 Q-YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 253


>gi|257469148|ref|ZP_05633242.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
 gi|317063395|ref|ZP_07927880.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689071|gb|EFS25906.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 220

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R I+ +S VP+I I+   +    +  F+ G DD + KP  ++  LARV  + +   + 
Sbjct: 63  ICREIKEYSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTVLKNKTIV 122

Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           N  N  E G +++         +G+   L  +E  IL Y + N+   +++ ++ + I+G 
Sbjct: 123 NNSNEIEVGKLKINDVSHSVSKEGKNLDLAPKEYEILMYFIKNKNIALSREKMLTEIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     +  ++ HI  LRK    K+G + + + R +GY  +
Sbjct: 182 YGFVGNDRTIDVHIKNLRK----KIGGEYIKTIRSVGYKFE 218


>gi|253581579|ref|ZP_04858804.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
 gi|251836649|gb|EES65184.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
          Length = 220

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 106/217 (48%), Gaps = 25/217 (11%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRII 67
           L+K+GY     +DG V+++ F    F          D+  ++  L  K G  VL   R I
Sbjct: 21  LLKEGYDVTEAEDGEVAIKLFYEKPF----------DLVILDIMLPKKDGWSVL---REI 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-- 125
           + +S VP++ +S     +  L  F+ G D+ + KP +++ +LAR+  + +    SNN   
Sbjct: 68  KKYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKTLIKN--TSNNTDH 125

Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E G I +        V+G+   L  +E  +L YL+ N    +++ ++ + ++G +D  
Sbjct: 126 IIELGKITINDTSHTVTVEGKEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWG-YDFP 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  +++HI  LRK    KLG + + + R +GY  +
Sbjct: 185 GSDRTIDTHIKNLRK----KLGDECIKTVRGIGYKFE 217


>gi|229119669|ref|ZP_04248936.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228663784|gb|EEL19358.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 225

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I +++  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKTTPIIIVTNNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  N       + +F D     V+  GE   L +RE  +L +L+ N+ K + +  +   +
Sbjct: 122 IQQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLLFLIKNKNKILHREMLLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +   V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 182 WG-YKVVVSPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223


>gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
 gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 19/221 (8%)

Query: 18  LFGDDGVSLEGFNSLEFE-------------EWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           L  +D  +L  F SLE +             E L+++  +D   I   L+       E+ 
Sbjct: 6   LIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVT 65

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
           R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +   
Sbjct: 66  RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIETE 125

Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N+     + +    R      E   L +RE  +L  LM N  + + + ++ S+++ 
Sbjct: 126 KKAPNQGVYRDLVLNPQNRSVNRGDEEISLTKREYDLLNILMTNMNRVMTREELLSSVWK 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 186 -YDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225


>gi|319938402|ref|ZP_08012797.1| signal transduction regulator [Coprobacillus sp. 29_1]
 gi|319806490|gb|EFW03154.1| signal transduction regulator [Coprobacillus sp. 29_1]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 86/171 (50%), Gaps = 2/171 (1%)

Query: 48  AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107
           AI   ++ + + +  + +I   ++Q+P++ +S   S    +   DSG DD + KP    E
Sbjct: 50  AIFDVMLPQMDGITAVKKIRETNTQMPILILSAKDSEIDKIHGLDSGSDDYMTKPFGVLE 109

Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           + ARV  + RR++  +   +T  + +       +   +   L  +E ++L YL+ N+ + 
Sbjct: 110 LCARVRTLLRRVQPKSKSIQTPTLSIDKSTHIVQQNNQGIDLTHKEYQLLLYLIENKERV 169

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V + ++ + I+G +D   E   ++ HI  LRKKL +  G   + + R +GY
Sbjct: 170 VERDELLNNIWG-YDFIGESRALDVHIRSLRKKLDDN-GEKYIKTVRSVGY 218


>gi|288960589|ref|YP_003450929.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288912897|dbj|BAI74385.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 12/193 (6%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K GY   +  DG   E    L  EE+        +  ++  L G   + L L ++ R 
Sbjct: 20  LRKHGYAIDWAADGYQAEEL--LAGEEY-------QLVILDLMLPGPDGQTL-LRQLRRK 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128
             Q P++ ++    + T +D  D G DD V KP   RE+ AR  A+ RR   ++ +    
Sbjct: 70  GDQTPVLVVTARSRVDTKVDALDLGADDYVVKPFDFRELEARCRALLRRHHGIATSEQVF 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G +   +  +   V+ +   L  RE R+LE  ++N  + + K  +   +  L D+ V  N
Sbjct: 130 GNLVFDTATKKVTVEAQAVDLSAREFRLLELFLSNLKRVMTKDTLIDRLCSL-DQPVAPN 188

Query: 189 VVESHISKLRKKL 201
            +E ++S+LR+KL
Sbjct: 189 AIELYVSRLRRKL 201


>gi|226949419|ref|YP_002804510.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226843232|gb|ACO85898.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 8/192 (4%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91
           +EF   +Q   +E+ S I   +         + R IR  S VP+I ++   S    L   
Sbjct: 32  IEFNNIIQYVEKENASLILLDINLPEFDGYYICREIRKTSDVPIIIVTSRDSEVDELISM 91

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVF 147
           + G DD V KP +   +LAR+  I +R    LK +NN        +         + +  
Sbjct: 92  NLGADDFVTKPYNTEILLARITNILKRTYGNLK-TNNTLNYKDFNLNLSNATLIYKDKSL 150

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L + E +IL YL+ NRG  V +  +   ++   D  V+++ +  +I++LRKKL+ ++G 
Sbjct: 151 ELTKNEVKILSYLINNRGNIVKRDSLMEYLWK-SDYFVDDSTLTVNINRLRKKLQ-EIGI 208

Query: 208 -DPVDSKRFLGY 218
            +P++++R LGY
Sbjct: 209 ENPIETRRGLGY 220


>gi|289207427|ref|YP_003459493.1| transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288943058|gb|ADC70757.1| two component transcriptional regulator, winged helix family
           [Thioalkalivibrio sp. K90mix]
          Length = 238

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 93/184 (50%), Gaps = 5/184 (2%)

Query: 37  WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           +L +    D++ ++  L G  G  V+   R ++   Q+P++ ++     Q  ++  ++G 
Sbjct: 40  YLLTEYHCDIAVVDLGLPGMDGLDVIRKAREVKP--QLPILILTARDRWQDKVEGLEAGA 97

Query: 96  DDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
           DD + KP H +E++AR+ A+ RR L+    + + GP+ + +   D  +  E   L   E 
Sbjct: 98  DDYLTKPFHIQELVARLRALARRSLQAGREQLQFGPLVIDTATDDVRLNDEPVSLTTFEY 157

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
           R+L  L+   G+ ++K  +   +Y   DE  E NV+E  I +LR+KL        +++ R
Sbjct: 158 RLLLTLVRQPGRVLSKEVLADYLYE-HDEDRESNVIEVLIGRLRRKLDPGGSLGLIETLR 216

Query: 215 FLGY 218
             GY
Sbjct: 217 GRGY 220


>gi|71279444|ref|YP_268131.1| transcriptional regulatory protein PhoP [Colwellia psychrerythraea
           34H]
 gi|71145184|gb|AAZ25657.1| transcriptional regulatory protein PhoP [Colwellia psychrerythraea
           34H]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 8/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----G 129
           P++ ++     Q  +   D+G DD + KP H  E+ +R+ A+ RR   S  +A T    G
Sbjct: 74  PILILTARDRWQDKVSGLDAGADDYLTKPFHVEELTSRLNALIRR---SAGKASTMINNG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  +        V+     L   E ++ +YLM + G+ ++KT +   IY   D  ++ NV
Sbjct: 131 PYSLDIATSQVLVEQVSVSLSAHEFKVFKYLMLHVGEVISKTTLTEHIYDQ-DFDLDSNV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E  I +LRKKL     ++ +++KR  GY +
Sbjct: 190 IEVFIRRLRKKLDPDSKYNFIETKRGQGYRL 220


>gi|154243824|ref|YP_001409397.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154162946|gb|ABS70161.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 220

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G+G   L   R   A +  P++ ++    +   +   D+G DD + KP    E+ AR+ A
Sbjct: 54  GRGSDFLRTLR--SAGAATPVMVLTARDQISDRIAALDAGADDYLVKPFDLCELSARIRA 111

Query: 115 IYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR   + N   T G I V    R     G+   L  RE  + E  +    + ++K Q+
Sbjct: 112 VGRRYAGNPNPLVTLGNIEVDLAARSVRRAGQAVALTAREWALFEAFVQRPHQLMSKPQL 171

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +Y  FD  VE N +E ++++LRK    KLG D +++ R +GY +
Sbjct: 172 EERLYS-FDAEVESNAIEVYVARLRK----KLGADVIETVRGMGYRL 213


>gi|332766713|gb|EGJ96917.1| response regulator [Shigella flexneri 2930-71]
 gi|333017489|gb|EGK36802.1| transcriptional activator protein irlR [Shigella flexneri K-227]
          Length = 253

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 42  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +++ S  +          L R+E ++L  L +
Sbjct: 102 FSFSELLARVRAQLRQHHALNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLAS 161

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217


>gi|313900383|ref|ZP_07833877.1| putative response regulator protein GraR [Clostridium sp. HGF2]
 gi|312954932|gb|EFR36606.1| putative response regulator protein GraR [Clostridium sp. HGF2]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + R +R  S +P+I ++   S    L   + G DD V KP + + +LAR+A + +R    
Sbjct: 63  ICREVRKSSDMPIIIVTSRDSDMDELISMNLGADDFVTKPYNLQILLARIARVLQRTYEH 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N      I +         +G    L + E RI+  L  N+ K V++ ++   ++  
Sbjct: 123 ASSNILTIHDIALDISKSTLTWKGNSIDLTKNELRIMHCLFQNKNKIVSRNELMQHMWDC 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V++N +  +I++LRKKL      D + +KR +GY I
Sbjct: 183 -DLFVDDNTLTVNINRLRKKLEYLRLDDLIQTKRGMGYII 221


>gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
 gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
          Length = 255

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 8/134 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P++ ++    ++  ++   +G DD V KP    E++AR+ AI RR K  +  +E   +R
Sbjct: 96  MPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK--HGSSEQPLLR 153

Query: 133 VFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           V     D  +      G++  L   E ++L YLM N G+ V+K+QI   ++  +D   + 
Sbjct: 154 VADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHVWE-YDWEGDA 212

Query: 188 NVVESHISKLRKKL 201
            +VES+IS LR+KL
Sbjct: 213 AIVESYISYLRRKL 226


>gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 231

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL R +R+ + VP++ +S   +    +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 66  ELCRRLRSKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +N+      I +  D            L  RE  +L  LM N GK V++  +   
Sbjct: 126 GDFPGANHAVTASGITLDEDAHTASGANGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
            +G ++   E   V++HI +LR K+ +  G+DP  V++ R  GY
Sbjct: 186 AWG-WEYLTETKTVDTHIKRLRDKIESA-GYDPGLVETVRGYGY 227


>gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 4/145 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + IR  S VP+I ++        +   + G DD V KP   +E+LARV A+ RR  
Sbjct: 65  MEVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124

Query: 120 -KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +N     P + + ++       GE    P +E  +L YL +N+ K   + Q+   +
Sbjct: 125 GEEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G +D   +   V+ HI +LR+KL 
Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKLN 208


>gi|172061017|ref|YP_001808669.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993534|gb|ACB64453.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 10/186 (5%)

Query: 41  SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           SA  D   ++  L G  G  +L   R +   +  P++ +S    +   +    +G DD +
Sbjct: 42  SASYDAITLDRMLPGADGLAILTAMRTVGIDT--PVLMLSALGDVDERIRGLRAGGDDYL 99

Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERR 155
            KP    E+ AR+  + RR + S    +T    GP+ +    R      +  PL   E R
Sbjct: 100 TKPFDSGELSARIEVLLRRRQASGVPQQTLLTVGPLELDLISRCARRGVDEIPLLPTEFR 159

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
           +LE++M N G+ + +T +F A++G  FD     N+++ H+ +LRKK+        + + R
Sbjct: 160 VLEFMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIDVHMGRLRKKIDPPGAVPIIQTVR 217

Query: 215 FLGYSI 220
             GY +
Sbjct: 218 GSGYML 223


>gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
 gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
          Length = 236

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 17/188 (9%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHS-QVPLIG 77
            +L  E W  ++A++ + A+        + V+   ++PR+        +RA   ++P++ 
Sbjct: 28  QALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLETLERLRARDPELPVLF 87

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRV 133
           ++   ++   +    +G DD V KP    E+ ARV  + RR   +   A T      + +
Sbjct: 88  LTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGRTQQAASTVLQVADLTL 147

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D  D    GE   L   E  +L YLM N G  ++K +I  A++  +D   + NVVE +
Sbjct: 148 DMDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAVWS-YDFGGQVNVVELY 206

Query: 194 ISKLRKKL 201
           IS LRKK+
Sbjct: 207 ISYLRKKI 214


>gi|255102347|ref|ZP_05331324.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308246|ref|ZP_05352417.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 20/195 (10%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE---AFLIGKGEKVLELPRIIR 68
           K GY  +  DDGV  E    L+       S   D+  ++    +L G       + R+ R
Sbjct: 23  KGGYTCITADDGV--EALTILK-------SNNIDLMILDIMMPYLDG-----FSVCRVSR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126
             + +P+I ++     +  L  ++ G DD + KP   + +LA+V A+ RR    +  N  
Sbjct: 69  EMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTTDIPKNSL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G I +    R   V+ ++  L  +E  +L   M N  +  ++ ++ + I+G +D    
Sbjct: 129 SLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG-YDFEGN 187

Query: 187 ENVVESHISKLRKKL 201
              V++HI  LRKKL
Sbjct: 188 TRTVDTHIKTLRKKL 202


>gi|126700822|ref|YP_001089719.1| two-component response regulator [Clostridium difficile 630]
 gi|115252259|emb|CAJ70100.1| Two-component response regulator [Clostridium difficile]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 20/195 (10%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE---AFLIGKGEKVLELPRIIR 68
           K GY  +  DDGV  E    L+       S   D+  ++    +L G       + R+ R
Sbjct: 23  KGGYTCITADDGV--EALTILK-------SNNIDLMILDIMMPYLDG-----FSVCRVSR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126
             + +P+I ++     +  L  ++ G DD + KP   + +LA+V A+ RR    +  N  
Sbjct: 69  EMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTTDIPKNSL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G I +    R   V+ ++  L  +E  +L   M N  +  ++ ++ + I+G +D    
Sbjct: 129 SLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG-YDFEGN 187

Query: 187 ENVVESHISKLRKKL 201
              V++HI  LRKKL
Sbjct: 188 TRTVDTHIKTLRKKL 202


>gi|72161642|ref|YP_289299.1| response regulator receiver [Thermobifida fusca YX]
 gi|71915374|gb|AAZ55276.1| response regulator receiver [Thermobifida fusca YX]
          Length = 218

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 13/163 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           IR+ S VP+I  S   + +  +     G DD V KP    E+ ARV A+ RR +V+  R 
Sbjct: 53  IRSRSSVPIIFHSVKATERDRVLGLKLGADDYVVKPCGTWELAARVEAVLRRARVAEVRI 112

Query: 126 --------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                   A  GP+RV  + R  EV G   PL  +E  +L  L+   G  V++ +I   +
Sbjct: 113 PRQDRGGVAVVGPLRVDLNQRQVEVGGRKVPLTYKEFELLRVLIERPGHVVSRAEIMHKV 172

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G   E+ +   +  H+  LR+KL        +++ R +GY I
Sbjct: 173 WGYTPES-DTRTLGVHMVSLRRKLALP---SLIETVRGVGYRI 211


>gi|304398000|ref|ZP_07379875.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304354286|gb|EFM18658.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 17/208 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-------GFNSLEFEEWLQSSAREDVSAIEAFLI 54
            +LI+D  L+ DG  A     G S++       GFN+LE   W   +   D+S  E    
Sbjct: 3   ILLIEDDRLIGDGIKAGLSKLGFSVDWFMSGESGFNALEAAPW--DAVILDLSLPER--- 57

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
             G  +L   R  +  + VP++ ++   +L   +     G DD + KP    E+ AR+ A
Sbjct: 58  -DGLDILREWR--QQGNDVPVLILTARDALDQRVKGLQLGADDYLCKPFALTEVAARLQA 114

Query: 115 IYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR           G + +         +GE   L  RE  +LE  M N  + + ++Q+
Sbjct: 115 LIRRRHGQLQPELRHGNVVLIPGSHSVMREGETIALKSRELALLELFMRNPSRVLTRSQL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              +Y  +D  V  N VE HI  LRKKL
Sbjct: 175 EEKLYS-WDADVSSNAVEVHIHHLRKKL 201


>gi|291537171|emb|CBL10283.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 271

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 17/169 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I +S        +   + G DD V KP +  E++ARV +  RR     N A
Sbjct: 108 IREESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQLGNAA 167

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E        G + +  D ++  V GEV  L   E  IL  L+ N+GK  +  QI+ +I+ 
Sbjct: 168 ENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYESIWN 227

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223
             D    +N V  HI  +R+K+      +P + +       +GY ID N
Sbjct: 228 -EDAIGADNTVAVHIRHIREKIE----INPKEPRYLKVVWGVGYKIDKN 271


>gi|269929028|ref|YP_003321349.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269788385|gb|ACZ40527.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 256

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 20/158 (12%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------------LKV 121
           PLI +S+  S +  +  F+ G DD + +P    E++ARV A+ RR            LKV
Sbjct: 74  PLIFVSEQGSTRAKVRAFEHGADDFIVEPYDPAELVARVGAVARRCQRADYQAMGTVLKV 133

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + V   GR+P +      L   E R+LE LM N    +++  +    +G +
Sbjct: 134 GDVELAIGELTVRVAGREPVL------LTPTEMRLLECLMRNSQITISRETLIERTWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           D   E N V+ +IS+LRKKL R+    + + + R +GY
Sbjct: 187 DFVGESNRVDVYISRLRKKLERDPAAPEYLHTVRGVGY 224


>gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 234

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 20/217 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 22  LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 71  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 130

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI + S+      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 131 NTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
              +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 190 YFGDVRTVDVTVRRLREKVEDNPSHPTLIVTRRGVGY 226


>gi|224371346|ref|YP_002605510.1| two-component response regulator (OmpR-like protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223694063|gb|ACN17346.1| two-component response regulator (OmpR-like protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 226

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           R +R  S VP+I I+        +  F+ GVDD + KP   RE++ARV A+ RR   K S
Sbjct: 67  REVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRRTFKKSS 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++    GP+++    R  E+ G    L   E  I   L+ +  +   + Q+   + G ++
Sbjct: 127 DDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQLIEKVQG-YN 185

Query: 183 EAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               E  ++ HI  LRKK+   L G   + S    GY I
Sbjct: 186 YDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKI 224


>gi|170727148|ref|YP_001761174.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812495|gb|ACA87079.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 78/151 (51%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR          +GP
Sbjct: 72  KAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVITSGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    +   +  EV  +   E +ILEYLM +  + VAK ++   +Y   D+  + N +
Sbjct: 132 LNLDLAAKQVTMHEEVMEVTAFEYQILEYLMRHCHEVVAKQRLLDVVYA--DKEGDPNTI 189

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  +S+LRKKL +    +P+ + R  GY  +
Sbjct: 190 EVMVSRLRKKLTSGGLDNPIATIRGQGYKFN 220


>gi|58040125|ref|YP_192089.1| cell cycle transcriptional regulator CtrA [Gluconobacter oxydans
           621H]
 gi|58002539|gb|AAW61433.1| Cell cycle transcriptional regulator CtrA [Gluconobacter oxydans
           621H]
          Length = 247

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 2/136 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127
           A    P++ +S     Q  +  F  G DD + KP    E++AR+ A+ RR +  +  +  
Sbjct: 69  ARITTPILVLSALLRPQAKIRAFSMGADDYMTKPYDAGELVARLQAVMRRSRGFAEPKLR 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +  +G++  V G    L  +E  ILE L+  +G  + K    + +YG  DE  E 
Sbjct: 129 VGNLELDLNGKNVTVDGAPLHLTGKEYAILELLVIRKGSVLTKDAFLNHLYGGIDEP-EM 187

Query: 188 NVVESHISKLRKKLRN 203
            +++  I KLR+KL+N
Sbjct: 188 KIIDVFICKLRRKLQN 203


>gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 26/219 (11%)

Query: 9   ALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL ++G+ +   GD   +LE FN+  FE  L          I   ++ K +   E+ R I
Sbjct: 24  ALEREGFQVQAVGDGEAALEAFNT--FEPHL---------IILDIMLPKLDGT-EVCRRI 71

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           RA S VP++ ++        +   + G DD V KP   RE++ARV AI RR +V    A 
Sbjct: 72  RAQSDVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMRRAQVP---AG 128

Query: 128 TGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             P  +  DG       R   V G    L   E  +L  L +N GK  +++ +   ++G 
Sbjct: 129 QRPDELNYDGLKINLPSRRVSVDGREVDLTYTEFELLVTLASNPGKVFSRSALLRRVWG- 187

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
            DE  +E  V+ HI  LR+K+ R+    + + + R +GY
Sbjct: 188 -DEFRDERTVDVHIRHLREKIERDPRNPEFIHTARGVGY 225


>gi|319935984|ref|ZP_08010407.1| hypothetical protein HMPREF9488_01238 [Coprobacillus sp. 29_1]
 gi|319808934|gb|EFW05441.1| hypothetical protein HMPREF9488_01238 [Coprobacillus sp. 29_1]
          Length = 221

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 102/218 (46%), Gaps = 4/218 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V+ DD+ + +    AL   D   ++ FN  +  E + SS    +  I+    G G   
Sbjct: 4   ILVVEDDQLIQRSLKEALELKDYEVIQAFNVKQTLEIMNSSIDLIIMDIQ-LPDGNG--- 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L + IR + + PL+ ++   S Q+ ++   +G DD V KP   +E+ AR+ ++ RR+ 
Sbjct: 60  ISLCQHIRENYRTPLLFLTCKNSEQSIVEGLSAGGDDYVCKPFGIQELYARIQSLLRRIP 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+ +   T  +++ +        G++  L      IL  L+ + G  + +  +   +   
Sbjct: 120 VNQDIIYTADLKIDTKNYQVYKNGQLLDLTNVCYHILLCLIQHHGMVITRQNLLDLVESQ 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               +E+N +  H+ ++R+ L    G   +++ R +GY
Sbjct: 180 TQHFIEDNTLSVHMKRIRQTLGTYHGQSYIETLRGVGY 217


>gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076603|gb|ADJ66002.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 16/171 (9%)

Query: 61  LELPRI--------IRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L LPR+        +RA  ++ P++ ++    L   +   + G DD + KP    E+ AR
Sbjct: 52  LTLPRMDGMEVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEAR 111

Query: 112 VAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           V A+ RR +  NN A T   G +   +  R     GE+  L  RE  +LE L+   G  V
Sbjct: 112 VKALLRRSQ--NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTV 169

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218
            K ++F  ++ L D A   + +E +I +LRKKL ++  G   + + R LGY
Sbjct: 170 PKEKLFQQVFTLEDNA-SMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGY 219


>gi|312193413|ref|YP_003991079.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217865|gb|ADP76468.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 237

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR     PL  IS   S    L  F  G DD + KP +  E++ARV A  +R  
Sbjct: 64  LEMCRAIRKGCDAPLFFISAKSSDLDKLTGFAHGCDDYITKPFNPLEVVARVKAQLQRYL 123

Query: 121 VSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              N+ +   I  F          +  V+G+  P   +  R+L +   +  +   K Q++
Sbjct: 124 SKENKEKQSEILDFGRFQLNLAAAELIVEGKPVPCSAQVYRLLAFFCKHPNQVFTKEQLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G  D+ V++N V  HI K+R+K+
Sbjct: 184 YQVWGE-DQLVDDNTVMVHIRKIREKI 209


>gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
 gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
          Length = 265

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 20/177 (11%)

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   LE+ R +RA      +P+I ++        +     G DD V KP    E++ARV 
Sbjct: 83  GVSGLEICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVR 142

Query: 114 AIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           ++ RR         L   +   +    RV   GRD  +    F       R+LE+LM   
Sbjct: 143 SLLRRARPDRVAAVLSAGDLELDRQNWRVRRTGRDVHLGPTEF-------RLLEHLMERP 195

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G+  ++ Q+  +++GL  E ++E  V+ H+ +LRK L      DP+ + R  GYS D
Sbjct: 196 GRVFSRAQLLDSVWGLSAE-IDERTVDVHVGRLRKALTAPGERDPIRTVRGAGYSFD 251


>gi|332668120|ref|YP_004450908.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332336934|gb|AEE54035.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 229

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 10/169 (5%)

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR+    VP+I ++   S+   L+ F  G +D + KP   RE+LAR+  + +   
Sbjct: 64  EVCKAIRSTKPDVPIIMVTALGSMDEKLNGFAVGANDYLVKPFDFRELLARMRVLLKN-A 122

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           VS N      ++V       D ++    G + PL  +E  +L +L+ N G+ V+K  I  
Sbjct: 123 VSFNTDNPSLLKVADLEMNLDTKNVYRAGHLIPLTPKEFGLLVFLIKNEGRVVSKYDIME 182

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++ L FD     NVVE +I+ LRKK+        + +K  +GY +  N
Sbjct: 183 QVWDLNFDSGT--NVVEVYINFLRKKIDRNYEPKLIHTKPGMGYYLAAN 229


>gi|315613043|ref|ZP_07887954.1| response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315315153|gb|EFU63194.1| response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 227

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 100/220 (45%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D AL++D  + L    G  ++     +F++  Q   + D   I   L   GE   
Sbjct: 4   ILVIEDEALIRDEIVILLEKTGYQVDKLT--DFKDTSQQVLQYDTDLIILDLNLPGETGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +++   VP++ ++    L+  +     G D+ + KP      LAR+  I +R + 
Sbjct: 62  QICKNLKSKRSVPILVLTSREQLKDEIYALKLGADEYLTKPFKKERFLARIENILKRYEG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  E     +        + G    LP+ + ++LE L+      + K ++   ++   
Sbjct: 122 RRNLLEKDNFLLDRQTYTLYINGHSILLPQNQGKLLETLLVTNAPVITKEELSMKLWN-T 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E ++EN ++ +I++L+K ++       V S R +GY ++
Sbjct: 181 TEFIDENALQVNIARLKKVMKQAGIALQVKSVRGIGYKLE 220


>gi|281179028|dbj|BAI55358.1| two-component response regulator [Escherichia coli SE15]
          Length = 239

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 104/219 (47%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++     F + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 19  ILLIEDNQRTQEWVTQGFSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 196

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 197 FDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 233


>gi|238920215|ref|YP_002933730.1| DNA-binding transcriptional regulator PhoP [Edwardsiella ictaluri
           93-146]
 gi|238869784|gb|ACR69495.1| transcriptional regulatory protein PhoP [Edwardsiella ictaluri
           93-146]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 2/150 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR   +++      P 
Sbjct: 73  LPILVLTARESWQEKVAALEAGADDYVTKPFHLEEVLARMQALMRRNSGLASQIISMPPF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +     R+  V   +  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 133 QADLSRRELRVNETLIKLTAFEYTIMETLIRNSGKVVSKDALMLQLYP-DAELRESHTID 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + +LRKKL+++   D + + R  GY  D
Sbjct: 192 VLMGRLRKKLQSEYPADVITTVRGQGYRFD 221


>gi|172065501|ref|YP_001816213.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997743|gb|ACB68660.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 221

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 27/230 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL------QSSAREDVSAIEAFLIG 55
            +L++D  L+ DG  A     G+  +GF      +W+      Q   R  V A     +G
Sbjct: 3   ILLVEDDVLLGDGIRA-----GLRQQGFQV----DWVRDGDAAQRELRAHVHAATVLDLG 53

Query: 56  ----KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
                G  VL+  RI R  +  P++ ++   ++   +   D+G DD V KP+   E+ AR
Sbjct: 54  LPLVDGMDVLK--RIRRDGTASPILVLTARDAVPDRIRALDAGADDYVIKPVDLYELGAR 111

Query: 112 VAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ RR       R     + +    R     G    L  RE  +L  LM N G+ +++
Sbjct: 112 LRALVRRSHGRPMERLHAQDVELEPASRTTRRAGVAVALSTREFDLLHILMLNAGRVLSR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            QI   +Y  + + VE N VE HI +LR     KLG + + + R +GY +
Sbjct: 172 EQIEQYLYS-WGQEVESNAVEVHIHRLRA----KLGSELIRTVRGVGYVL 216


>gi|22538256|ref|NP_689107.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25012116|ref|NP_736511.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76798542|ref|ZP_00780775.1| Two-component response regulator czcR [Streptococcus agalactiae
           18RS21]
 gi|77413189|ref|ZP_00789387.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22535169|gb|AAN00980.1|AE014287_20 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|24413660|emb|CAD47740.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586106|gb|EAO62631.1| Two-component response regulator czcR [Streptococcus agalactiae
           18RS21]
 gi|77160729|gb|EAO71842.1| DNA-binding response regulator [Streptococcus agalactiae 515]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 3/152 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAET 128
           SQV ++ ++   +++  +   D G DD + KP    E++AR+ A+ RR   +VS++  + 
Sbjct: 71  SQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRANRQVSSDDIQI 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             I +    +       +  L  +E  +LEYL  +R + +++ QI   ++  +D   E N
Sbjct: 131 QDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVWD-YDYYGESN 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++  I  LR+KL N      + +KR LGY I
Sbjct: 190 IIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221


>gi|270293204|ref|ZP_06199415.1| DNA-binding response regulator [Streptococcus sp. M143]
 gi|270279183|gb|EFA25029.1| DNA-binding response regulator [Streptococcus sp. M143]
          Length = 225

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QGEV  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +     +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLAGFIETKKGIGYGL 222


>gi|225181176|ref|ZP_03734622.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168145|gb|EEG76950.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 232

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 31/223 (13%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LV++GY  +   DG         E    L  +   D+  ++  L  K      + R IR 
Sbjct: 23  LVQEGYAVVVAYDG---------EEATRLMQTESPDLVLLDIMLPKKDG--FAVCRDIRR 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN----- 124
            S VP+I ++   +   T+   + G DD V KP   RE+LARV A  RR + +       
Sbjct: 72  VSNVPIIMLTAKDTELDTVLGLELGADDYVTKPFSAREVLARVKAQLRRTQAAKGPGGEF 131

Query: 125 ------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + +TG + +  +G D         L  RE  +L YLM N G  +++ ++ S ++
Sbjct: 132 LICDDLQVDTGRMEIRKNGVD-------IDLTYREYLLLVYLMRNAGYVISREKLLSEVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G +D   +E  V+  I +LR+K+  N      + +KR  GY I
Sbjct: 185 G-YDFYGDERTVDVTIRRLREKIEENPSQPRYIRTKRGAGYFI 226


>gi|251796056|ref|YP_003010787.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543682|gb|ACT00701.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 225

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 3/131 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYR-RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD V KP    E+LAR+ A  R +       A  GP RV    ++   Q +V  L   
Sbjct: 97  GADDYVVKPFSFEELLARIKARLRNQFPSLLGEATYGPFRVNDVKKELIYQDQVLELSPT 156

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  +L+Y++ N G  ++K QI  +++G +    EEN+VE +I  LR KL +K     + +
Sbjct: 157 EYELLKYIVQNNGIVLSKAQILDSVWG-YRFGGEENIVEVYIRSLRDKLGDK-EHRLIRT 214

Query: 213 KRFLGYSIDWN 223
            R +GY +D +
Sbjct: 215 LRGVGYRMDLS 225


>gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + IR  S VP+I ++        +   + G DD V KP   +E+LARV A+ RR  
Sbjct: 65  MEVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124

Query: 120 -KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +N     P + + ++       GE    P +E  +L YL +N+ K   + Q+   +
Sbjct: 125 GEEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G +D   +   V+ HI +LR+KL
Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKL 207


>gi|323702467|ref|ZP_08114131.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532606|gb|EGB22481.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 222

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 5/150 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   +++  ++  D+G DD + KP    E+LARV A+ RR  V     +     
Sbjct: 73  TPVLMLTAKDAVENRIEGLDAGADDYLIKPFSTGELLARVRALGRRRNVQLGGDKLEAWG 132

Query: 133 VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +  D +  EV   G    L  +E  +LE  M N G+ + + QI   ++GL D  VE   V
Sbjct: 133 LILDPQRCEVTKDGTTIKLTLKESLLLELFMRNPGQVITREQILDRVWGL-DSDVETGTV 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++  LRKKL  +     +++ R +GY +
Sbjct: 192 EIYVHYLRKKLNFR--DISIETIRGVGYCL 219


>gi|302528568|ref|ZP_07280910.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437463|gb|EFL09279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 244

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 10/170 (5%)

Query: 56  KGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
            G   +E+ R +RA     P++ ++        L   + G DD + KP   RE+ ARV  
Sbjct: 79  SGMDGIEICRALRAAGDWTPVLFVTARDDELDRLLGLEIGADDYLTKPFSPRELAARVRT 138

Query: 115 IYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + RR   S + A T   G +R+   GR          L   E  +L YL+ + G+ +++ 
Sbjct: 139 VLRR--ASGSPATTLACGGVRIDVPGRRAWAGEAEVALTSTEFDLLAYLLRHPGQVLSRD 196

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           Q+ SA++G +  A     V+ H+++LR KL +     P+ + R +GY+ D
Sbjct: 197 QLLSAVWG-YAAAAGTRTVDVHVAQLRAKLGDD---SPIRTVRGIGYAAD 242


>gi|254558966|ref|YP_003066061.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens DM4]
 gi|254266244|emb|CAX22002.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens DM4]
          Length = 220

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 17/225 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D  ++ DG  A  G  G ++E   +    +   +++      ++  L  G G  V
Sbjct: 3   ILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALAASGFGAVVLDLMLPDGSGLDV 62

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +R    + P++ ++   ++   +   D G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---RGLRERGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELAARIRAVVRR- 118

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++ RA    E   IR+        + GE  P+ RRE  +L  LM       +K ++  
Sbjct: 119 --ASGRASACLEHAGIRLDPAELTVTLHGEPVPVSRREFMVLTALMERPNVLRSKAELEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E VE N VE H+  LR     K+G   +++ R LGY +
Sbjct: 177 RLYG-WQEEVESNTVEVHVHNLRA----KIGKHAIETVRGLGYRM 216


>gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 234

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 20/217 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 22  LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 71  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 130

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI + S+      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 131 NTEMVIGPIVINSNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
              +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGY 226


>gi|227485289|ref|ZP_03915605.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227236749|gb|EEI86764.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 219

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 4/153 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           +R  S +P+I ++        +   +SG DD + KP    E+L+RV AI RR+ K   + 
Sbjct: 65  LREFSDIPVIILTAKTDEFDKVLGLESGADDYITKPFSILELLSRVKAILRRVNKADCDH 124

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                + + +  R  +V GE   L  +E  +L   M N G  + +      I+G +D   
Sbjct: 125 LTYKNLSINTKKRTVKVNGEKIDLTYKEFEMLFLFMNNMGNVITREDFLLKIWG-YDYQG 183

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E   V+ HI+ LR KL++   +  + + R LGY
Sbjct: 184 ETRTVDVHIASLRSKLKDAGSY--ISTVRNLGY 214


>gi|172038291|ref|YP_001804792.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171699745|gb|ACB52726.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 14/168 (8%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L + +RA+  + P++ ++   ++Q  +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IALCQQLRANGCKTPILMLTARDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALLRR- 118

Query: 120 KVSNNRAETGPIRVFSD-GRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     PI  + D   DP       Q +   L  +E R+LE+ + +  +  +++Q+
Sbjct: 119 ----GETALPPILTWGDLCVDPNTCEVTYQQQALNLSPKEYRLLEFFLRHPRRMFSRSQL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
              ++ + D+  EE  V++HIS LR+KL+   L  D +++   LGY +
Sbjct: 175 LDHLWAM-DQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRL 221


>gi|154505123|ref|ZP_02041861.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
 gi|153794602|gb|EDN77022.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
          Length = 236

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 14/169 (8%)

Query: 45  DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D   ++  L G  GE VL+  R  +   ++P++ +S   S+Q  +     G DD + KP 
Sbjct: 53  DCVLLDLMLPGMTGEAVLDQIRQ-KQKKEMPVLILSAKVSVQDKVKLLRLGADDYITKPF 111

Query: 104 HHREILARVAAIYRRL--KVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRI 156
              E++ARV A  RR   +  N  AE    R     ++   R  EV G   PL   E  I
Sbjct: 112 DPEEVIARVEAAMRRYTKEAQNMEAEQEVFRYKNLSLYPQSRKVEVSGIELPLTMHEYDI 171

Query: 157 LEYLMANRGKRVAKTQIFSAIY--GLFDEAVEENVVESHISKLRKKLRN 203
           L  L+ N  K  ++  ++  ++  G +    E+N V  H+S LRKK++ 
Sbjct: 172 LYLLIQNPQKVYSREHLYEQVWKGGYYG---EDNTVNVHVSNLRKKIQK 217


>gi|325914487|ref|ZP_08176831.1| two component transcriptional regulator, winged helix family
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325539257|gb|EGD10909.1| two component transcriptional regulator, winged helix family
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 221

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           GE  L + R +R+H    P+I ++    L   +   D+G DD + KP    E++AR+ AI
Sbjct: 56  GESGLTVIRFLRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAI 115

Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            RR   S  R       G + V    R     G    L   E R+L  LM   G+ V K 
Sbjct: 116 TRR---SQGRVVPVLSQGDVCVDPSSRKVTRAGTWVALSAHEYRLLLALMERAGRVVTKD 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           Q+  ++YG   E    N++  ++ +LR+KL ++L
Sbjct: 173 QLEESVYGGPSEG-GSNMIAVYVHQLRRKLGDEL 205


>gi|320528447|ref|ZP_08029609.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320131361|gb|EFW23929.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 227

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 5/140 (3%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----V 121
           I +   Q+P I +S        +  FD GVDD V KP   +E++ R+ AI +R+     V
Sbjct: 67  IKKTKPQLPFILLSALGEEYDRIHGFDVGVDDYVVKPFSSKELMMRIHAILKRVHPVEAV 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+ + +   + +    R   ++G+   L  +E  +L YL+ N G  + + Q+   ++G +
Sbjct: 127 SSEQFQIDGMVIDYSARTVTIEGQRIQLSPKEYELLVYLVKNMGIALTREQLLQNVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKL 201
           D   ++  +++HI  LRK L
Sbjct: 186 DFFGDDRTLDTHIKLLRKNL 205


>gi|312890843|ref|ZP_07750372.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296626|gb|EFQ73766.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 227

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 5/143 (3%)

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +R+ +++ P+I +S     +  +   D G  D + KP    E+LARV A+ RR L
Sbjct: 61  EVIKALRSFNNETPVIILSALNDTENVIKGLDLGAIDYLKKPFDLEELLARVRAVLRRSL 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + + +   ++V    R+         L  RE  +LEYL++N  K V K+QI   ++ 
Sbjct: 121 AQGSLKLQVEDLKVDLLSREVSRNNVNIILSNREFALLEYLLSNPNKVVTKSQILEKVWD 180

Query: 180 L-FDEAVEENVVESHISKLRKKL 201
           + FD     NVVE H+ +LRKK+
Sbjct: 181 INFDPG--SNVVEVHLYQLRKKM 201


>gi|302670595|ref|YP_003830555.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395068|gb|ADL33973.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 225

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 98/188 (52%), Gaps = 15/188 (7%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           LVKDGY+ +  +DG  +L+ F    +E+       +D+S I   ++       E+ + IR
Sbjct: 23  LVKDGYLVVEAEDGQQALDIF----YED-------KDISLIILDVMMPKRDGWEVCKEIR 71

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR-A 126
            +S+VP+I ++     +  L  F+ GVD+ ++KP   + + ARV+AI RR  + +NN+  
Sbjct: 72  TNSKVPIIMLTAKAEERDELLGFELGVDEYISKPFSPKILAARVSAILRRTNQAANNQIM 131

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           E G I V        V G+   L  +E  +L +   N+G  +++ +I + ++  +D   +
Sbjct: 132 EIGGIVVNKVAHSVLVDGKEIDLSYKEFELLSFFFENKGVALSREKILNNVWN-YDYFGD 190

Query: 187 ENVVESHI 194
              +++H+
Sbjct: 191 ARTIDTHV 198


>gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 238

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 11/170 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP+I ++   S    +   + G DD V KP  +RE++ARV A  RR +
Sbjct: 61  LEVCREIRKTSHVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQQ 120

Query: 121 VSNNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++    E          G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 121 LAPAETEEEKTANEIVLGALTIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY I
Sbjct: 181 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYI 229


>gi|225571501|ref|ZP_03780497.1| hypothetical protein CLOHYLEM_07599 [Clostridium hylemonae DSM
           15053]
 gi|225159578|gb|EEG72197.1| hypothetical protein CLOHYLEM_07599 [Clostridium hylemonae DSM
           15053]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 3/155 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           ++  S  P++ ++    L   L     G D+ + KP     +LAR   + RR +      
Sbjct: 67  LKERSSCPVLVLTSRNHLNDELRALRIGADEYLTKPCRKERLLARAENLMRRFEGREQEI 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +        V G    LP  + +I+E LM  RG  V K ++ SA++G   E ++
Sbjct: 127 RLGELTLDIRTYTLYVSGCSVLLPENQGKIMEKLMKKRGGTVTKEELSSALWGT-TEYID 185

Query: 187 ENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           EN ++ ++++L+K L  +L  D  +++ R +GY I
Sbjct: 186 ENALQVNMTRLKKTL-ARLSLDGRIETVRGVGYRI 219


>gi|171058057|ref|YP_001790406.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775502|gb|ACB33641.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 265

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 21/175 (12%)

Query: 57  GEKVLELPRIIRAHSQVPLIGI----SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           G   L   R +R   +   I I    +D P    T+   +SG DD V K +   E+LAR+
Sbjct: 58  GGHALSYARQLRGDQRTSGIAIIVIGADAPQAHDTVAALESGADDCVCKSVSVSEVLARI 117

Query: 113 AAIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
            A+ RR         L++S  R +    RV + GRD E       L   E R+L + M +
Sbjct: 118 RAVMRRSAPQCGDQALEISGLRFDPAARRVTALGRDIE-------LCAIEYRLLHFFMTH 170

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + + ++Q+   ++G     VEE  V+ H+ +LR+ L        +++ R +GY
Sbjct: 171 PDRILGRSQLLDQVWG-DHVCVEERAVDIHVRRLRRALEPSGHAALIETIRGMGY 224


>gi|166710635|ref|ZP_02241842.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 226

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        +   D+G +D V KP   +E++AR+ A+ R+   
Sbjct: 59  EVLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 118

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   E+    VF DG        R+  + GE  PL R+E  ++  L+ + G+ V + Q+
Sbjct: 119 GSTVEES----VFDDGRLHIHLGLREVTLNGEAVPLSRKEYALVALLLKHAGRVVTQPQL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYS 219
              ++G   E  + + +   + KLR+KL++          +P    RF+G +
Sbjct: 175 LRELWGPTHEE-DTHYLRILVGKLRQKLQDDAAAPHYIVTEPGVGLRFIGVT 225


>gi|163816850|ref|ZP_02208213.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
 gi|158448107|gb|EDP25102.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 2/162 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L +I      VP+I ++        ++  D G DD + KP   +E+LAR+ AI RR  + 
Sbjct: 63  LSKIRSEGCDVPVIMLTAKSETDDKINGLDLGADDYLAKPFDTKELLARIRAITRRKSEA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G   + S   +    G    L  +E +I+E LMAN+   ++   +   I+G +
Sbjct: 123 VSTDVIYGDCTLNSLNYELSSGGGSVKLQNKEYQIMELLMANQKSIISAELMMEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   E +VV  +IS LRKKL        + + R  GY+++++
Sbjct: 182 DTDTEISVVWVNISYLRKKLGQIGSKVSIKAVRNQGYTLEYS 223


>gi|148243511|ref|YP_001228668.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147851821|emb|CAK29315.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 229

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +R   +++P+I I+    +   +   ++G DD ++KP + RE+LARV A+ RR 
Sbjct: 65  LDVCRRLRDTGNRIPVIMITARDEMDDRVAALEAGADDFISKPFNIREVLARVKALLRRS 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S ++   G + +    R     G+   L  RE  +LE  + N  + +++TQ+   ++
Sbjct: 125 TAISPDQLNFGDLHLNGAERRCSYGGQELTLTVREFDLLECFLRNPRQALSRTQLIQNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D   ++NVV+ ++  LR+KL        + + R +G+++
Sbjct: 185 G-EDYFGDDNVVDVYVRYLRRKLEEVKPDRIIQTIRGIGFAL 225


>gi|160896769|ref|YP_001562351.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362353|gb|ABX33966.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
 gi|222836939|gb|EEE75332.1| predicted protein [Populus trichocarpa]
          Length = 239

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 19/216 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +V  G      D G +++   S E    + +    D++ I+  L   G   L
Sbjct: 3   LLLVEDDVMVASGIKLGLSDAGYAVDWVGSAERALEVLAQEAFDLAVIDIGL--PGIDGL 60

Query: 62  ELPRIIRAH----SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           EL R +R+     S +P++ ++   +LQ  +   D G DD + KP    E+LAR+ A+ R
Sbjct: 61  ELTRRLRSSAVESSAMPVLILTARDALQDRVQGLDQGADDYMVKPFELPELLARLRALLR 120

Query: 118 RLKVSNNRAET-GPIRVFSDGR---------DPEVQGEVFP--LPRRERRILEYLMANRG 165
           R + + +   + GPI + + GR         D E +G++ P  L  RE  +LEYL+ +  
Sbjct: 121 RSQAATSAVLSFGPIELDTAGRRAGARQPAQDDESEGKLLPIDLGPREWTVLEYLLIHAP 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           K  +K ++  A+ G +D  +  N VE ++S+LR KL
Sbjct: 181 KPASKDKLLQALTG-WDREITPNAVEVYVSRLRSKL 215


>gi|92116579|ref|YP_576308.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799473|gb|ABE61848.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 220

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R +  + Q+P+I ++   ++   +   D G DD + KP   RE+LAR+ AI 
Sbjct: 59  GTEVLRAFRTM--NRQLPVIIVTARDAIDDRIHGLDLGADDYLVKPFEIRELLARMRAIL 116

Query: 117 RRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR + S N A    G I +     +    G    L  RE  +L+ LM   G  +++  + 
Sbjct: 117 RR-QGSGNAAILSNGTISLDPATHEVAHGGGAARLTAREFALLQALMLRPGTILSRVDLE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             IYG ++E VE N VE  I  +RK    KLG   + + R +G+ +D
Sbjct: 176 RHIYG-WNEEVESNAVEFLIHAIRK----KLGASSIRNVRGVGWMVD 217


>gi|319650220|ref|ZP_08004366.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
 gi|317398051|gb|EFV78743.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
          Length = 233

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 21/200 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIR 68
            +K+GY  +F  DG   +GF     E W       D+  ++  L I  G   + L R IR
Sbjct: 20  FMKEGYHGVFVHDG--QQGFEHFNKERW-------DLLIVDWMLPIMDG---VTLCRKIR 67

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE- 127
             S+VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR +     A+ 
Sbjct: 68  ELSKVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRFQAETGSADE 127

Query: 128 -----TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   ++  + R+    G++   L  +E  +L YL+ +  +   + Q+  +++G +
Sbjct: 128 PHYVASEYFKISKESREAYYNGQLLKNLTPKEFDLLYYLVKHPKQVFTREQLLDSVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKL 201
               +E  V+ HI +LRKK+
Sbjct: 187 QFYGDERTVDVHIKRLRKKI 206


>gi|303240775|ref|ZP_07327288.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302591663|gb|EFL61398.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 224

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 15/212 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L+++GY  +   DG+           + L+      V  I   L+       EL   +R
Sbjct: 20  VLIQNGYEVILAKDGI-----------DALEKMDNHHVDLIVLDLMMPRMDGYELSETLR 68

Query: 69  -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRA 126
             +  +P++ ++   +       F  G DD + KP+   E++ R+AA+ RR K+ N +R 
Sbjct: 69  KCNCNLPILMVTAKETPADKKKGFLVGTDDYMVKPVDEEEMILRIAALLRRSKIVNEHRL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G   +  D       G V  LP +E  +L  L++ + K   +  +   I+G+ +   +
Sbjct: 129 TVGETVLDYDELTVSYMGYVQELPNKEFTLLYKLLSYQNKIFTRRSLMDEIWGM-NSDTD 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E  V+ HI++LR +L+    F+ + + R LGY
Sbjct: 188 ERTVDVHINRLRDRLKENPDFEII-TVRGLGY 218


>gi|169795326|ref|YP_001713119.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|213158688|ref|YP_002319986.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215482859|ref|YP_002325062.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|260554438|ref|ZP_05826659.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|301346782|ref|ZP_07227523.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB056]
 gi|301510388|ref|ZP_07235625.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB058]
 gi|301595944|ref|ZP_07240952.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB059]
 gi|332850436|ref|ZP_08432756.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013150]
 gi|332871886|ref|ZP_08440298.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013113]
 gi|169148253|emb|CAM86118.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|213057848|gb|ACJ42750.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213988252|gb|ACJ58551.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|260410980|gb|EEX04277.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|332730707|gb|EGJ62018.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013150]
 gi|332731100|gb|EGJ62401.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013113]
          Length = 220

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GEKVL   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  
Sbjct: 59  GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116

Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R+  +S     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  
Sbjct: 117 RKQTLSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A+Y  + E +E N +E  I +LRK    K+G   + + R LGY +
Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216


>gi|158319177|ref|YP_001511684.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139376|gb|ABW17688.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 231

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 9/142 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I IS   +  T ++  + G DD + KP    E+LARV A  RR  V +N  
Sbjct: 70  IRKLKNMPIIVISAKLAQDTKIEVLNLGADDFIVKPFDVNEVLARVEAQLRRYMVFSNPR 129

Query: 127 ETGPIRVFSD---GRDP-EVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +   I  + D    RD  EV  +  P+    +E  ILE LM +  K   K  +F  ++  
Sbjct: 130 DKQNILTYKDLVLNRDTVEVTMKGLPISVTAKEFAILELLMEHPKKVFTKANLFEQVWN- 188

Query: 181 FDEAV-EENVVESHISKLRKKL 201
            DE + ++N V  HIS LR KL
Sbjct: 189 -DEFLGDDNTVNVHISNLRSKL 209


>gi|332342732|gb|AEE56066.1| transcriptional regulatory protein PhoP [Escherichia coli UMNK88]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 105/218 (48%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R++   +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEMMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E + ++  + +LRKK++ +   + + + R  GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218


>gi|326789482|ref|YP_004307303.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540246|gb|ADZ82105.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 222

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 104/209 (49%), Gaps = 25/209 (11%)

Query: 32  LEFEEW-LQSSAREDVSAIEAFLIGKGEKVL----ELPRI--------IRAHSQVPLIGI 78
           L  E+W +Q    ED S +   ++ K  K++     LP          IR  S +P++ +
Sbjct: 19  LSLEKWGMQVQLIEDFSNVLEEVVRKQPKLVLMDVNLPYYDGFYWCGRIREVSNLPILFL 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG- 137
           S   S    +   ++G DD + KP   + +L+++ A+ RR   +    + G +  ++D  
Sbjct: 79  SSRDSNMDVIMGINNGGDDYITKPFDTQVLLSKINALLRR---AYQYTDAGALLYYNDAV 135

Query: 138 -----RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
                 +   +G    L + E +IL  L+ N+GK V++ +I  +++   DE + +N +  
Sbjct: 136 LDIDKCELRYKGNSLELTKNEIKILTLLIRNKGKVVSRDKIMMSLWN-DDEFISDNTLTV 194

Query: 193 HISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           ++++LR K++ ++G + V  +K+ LGY +
Sbjct: 195 NMTRLRSKMK-EIGLEEVIKTKKGLGYMM 222


>gi|227514651|ref|ZP_03944700.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227086960|gb|EEI22272.1| response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 187

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 3/146 (2%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132
           P++ ++   ++      F SG DD + KP+   E+  RVAA+ RR K+++ R  T G   
Sbjct: 37  PVLMLTAKTTITDKTTGFTSGADDYLTKPVDLAELKLRVAALLRRAKINSARQITIGQTI 96

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  +     + G    L ++E  +L  L++   K   + Q+   I+G+ D    E+ V++
Sbjct: 97  LNEENFTLTINGHFTTLAKKEFLLLFTLLSYPNKIFTQAQLLDQIWGI-DSDSTEDTVKT 155

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218
           H+SK+RK L++      + + R LGY
Sbjct: 156 HVSKVRKLLKDSNDV-KITTIRGLGY 180


>gi|163794790|ref|ZP_02188760.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
 gi|159180063|gb|EDP64588.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
          Length = 229

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 25/223 (11%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65
           +R  V+ GY      DG   EG        +L +    D   ++  L G  G  VL+  R
Sbjct: 19  ERGFVEQGYAVDRTADG--REGL-------FLATGQDYDAVVLDRMLPGLDGLSVLKAVR 69

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
              A  Q P++ +S   +L   +    +G DD + KP    E+ AR+ A+ RR   S   
Sbjct: 70  A--AGVQTPVLILSAMGALDERVRGLRAGSDDYLVKPFAFVELHARIDALIRR---SAAG 124

Query: 126 AETGPIR-VFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            E  P R V +D       R     G   PL +RE ++LEYLM + G+ V +T +   ++
Sbjct: 125 TEAPPSRLVVADLELDLLSRKVTRAGRPIPLQQREFQMLEYLMRHAGRVVTRTMLLEGVW 184

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              FD   + NV++ HIS+LR+K+        + + R  GY +
Sbjct: 185 NYHFDP--QTNVIDVHISRLRQKVDKDFDSPLIHTVRGSGYML 225


>gi|126470034|dbj|BAF48119.1| hypothetical protein [Rhodococcus rhodochrous]
          Length = 251

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 8/147 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  S   ++ ++       TL     G DD + KP   RE++AR+ A+ RR +
Sbjct: 83  VEVCRQLRTFSDAYVVMLTARTEELDTLIGLSVGADDYMTKPFGPRELIARIQAMMRRPR 142

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++  A +  IR F D      GR+  V G    L R E  +L  L  + G  + + Q+ 
Sbjct: 143 TTDT-ARSRQIRTFGDLSIDVEGREVTVDGVPVSLTRTEFDVLAALSQDPGIVITRAQLI 201

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
            A++G  +   +E++V+ HI  LR+KL
Sbjct: 202 GAVWG-PNWVGDEHLVDVHIGHLRRKL 227


>gi|17546455|ref|NP_519857.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17428753|emb|CAD15438.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 230

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPI 131
           +P++ ++ + +++  +   + G DD + KP    E+ AR  A+ RR       + + GP+
Sbjct: 73  LPVMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSHGHERTQLQCGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
                     ++GE   L  RER +LE LM   G+ V K  I   I+G+ +E+V  + +E
Sbjct: 133 HYDGTSGAFTLRGEALALTGRERAVLEVLMLRDGRAVNKAAISEKIFGI-NESVNADAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LRKKL
Sbjct: 192 IYVHRLRKKL 201


>gi|261346186|ref|ZP_05973830.1| DNA-binding response regulator TctD [Providencia rustigianii DSM
           4541]
 gi|282565842|gb|EFB71377.1| DNA-binding response regulator TctD [Providencia rustigianii DSM
           4541]
          Length = 222

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 5/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + +   + P++ ++    +   +   ++G DD + KP    E+ AR+ A+ RR   +
Sbjct: 63  LASMRKRQQETPVLLLTANSDVSDRVKGLNAGADDYLTKPFDIAELEARIRALLRRSHGN 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N ++      F D     ++ E   L  RE  +L  L   RG+ V+KTQ+F  ++ L D
Sbjct: 123 INESQCYGDLCFHDDGYFLLRAEPLGLTPREYAVLNTLFHRRGRPVSKTQLFEQVFSLSD 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           EA  ++ +E ++ ++RKKL    G D  +++ R LGY ++
Sbjct: 183 EANLQS-IELYVHRVRKKLA---GSDVNINTLRGLGYRLE 218


>gi|164687882|ref|ZP_02211910.1| hypothetical protein CLOBAR_01527 [Clostridium bartlettii DSM
           16795]
 gi|164603157|gb|EDQ96622.1| hypothetical protein CLOBAR_01527 [Clostridium bartlettii DSM
           16795]
          Length = 233

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 90/163 (55%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++   S    L   + G DD V KP + + +LAR+AA+ +R  ++
Sbjct: 73  ICREIRKTSEVPIIVVTSRDSEVDELMSMNLGADDFVTKPYNTQILLARIAALLKRSGMN 132

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +N   +  I  + D +       V        L + E +IL YL+ ++G+ V++  +   
Sbjct: 133 SN---SNSILTYKDFKLNLSNATVIYNDKNIELTKNEVKILSYLINHKGEIVSRELLMEH 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           ++   D  V+++ +  +I++LRKKL +++G  + ++++R LGY
Sbjct: 190 LWN-SDFFVDDSTLTVNITRLRKKL-DEIGIKNVIETRRGLGY 230


>gi|153955166|ref|YP_001395931.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146348024|gb|EDK34560.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 225

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKVL 61
           ++IDD   +++    +  +DG S+  F ++   + LQ    E +   +   ++ + +   
Sbjct: 5   LVIDDDGYIRELICTVLKNDGFSV--FEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
              ++ R +  +P++ ++    L   +  F+ G DD + KP    E+L R+ A+ RR K 
Sbjct: 63  FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRRYKV 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++     G + +           E + +P +E  +L  L +  GK +++ ++   ++GL
Sbjct: 123 VASQTINIGNLAMDKSRYTVISNNENYDIPMKEFELLFMLGSYHGKTLSRNRLIEEVWGL 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D    E  ++ HI++LR++  + +    + + R LGY ++
Sbjct: 183 -DFEGNERTLDVHINRLRERFPSHVYKFKITTIRGLGYRLE 222


>gi|77461827|ref|YP_351334.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385830|gb|ABA77343.1| phosphate regulon two-component system, response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 229

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 32/217 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G++ LE E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRA--ETG-----PI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           A+ RR   ++  A  E G     PI  RV  DGR  E       +   E R+L++ M ++
Sbjct: 119 AVLRRAGPTDGEAPIEVGGLLLDPISHRVTIDGRPAE-------MGPTEYRLLQFFMTHQ 171

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +   + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 172 ERAYTRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|53718445|ref|YP_107431.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|53725056|ref|YP_102132.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|124383485|ref|YP_001028396.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126440297|ref|YP_001057896.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126448259|ref|YP_001079631.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126452671|ref|YP_001065131.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|167718314|ref|ZP_02401550.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167737359|ref|ZP_02410133.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167814484|ref|ZP_02446164.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167822949|ref|ZP_02454420.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167844517|ref|ZP_02470025.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167893045|ref|ZP_02480447.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167901503|ref|ZP_02488708.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167909750|ref|ZP_02496841.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167917773|ref|ZP_02504864.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|254176802|ref|ZP_04883459.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254181603|ref|ZP_04888200.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254187561|ref|ZP_04894073.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254203812|ref|ZP_04910172.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254208790|ref|ZP_04915138.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254261588|ref|ZP_04952642.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254360157|ref|ZP_04976427.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52208859|emb|CAH34798.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52428479|gb|AAU49072.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|124291505|gb|ABN00774.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126219790|gb|ABN83296.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126226313|gb|ABN89853.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126241129|gb|ABO04222.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147745324|gb|EDK52404.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147750666|gb|EDK57735.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148029397|gb|EDK87302.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157935241|gb|EDO90911.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160697843|gb|EDP87813.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|184212141|gb|EDU09184.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254220277|gb|EET09661.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 220

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 119 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216


>gi|238792116|ref|ZP_04635752.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC
           29909]
 gi|238728747|gb|EEQ20265.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC
           29909]
          Length = 239

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 2/158 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   + + R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 63  LMLPGSDGITICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARV 122

Query: 113 AAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             I RR + +    +ET P+ +         QG    L   E R+L+ L    G   ++ 
Sbjct: 123 KTILRRCRPLPQQPSETVPLLIDESRFQASYQGHSLELTPAEFRLLKILATQPGHVFSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           Q+ + +Y  +   V +  ++SHI  LR+KL +  G  P
Sbjct: 183 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKLESLDGEKP 219


>gi|332886069|gb|EGK06313.1| hypothetical protein HMPREF9456_00187 [Dysgonomonas mossii DSM
           22836]
          Length = 228

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 7/140 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           +  + +P++ ++   +    L  F  G DD ++KP   +E++AR+ A+ +RL+V  N  E
Sbjct: 69  KEGNNIPIVFLTAKDTENDMLTGFSVGGDDYISKPFSIKEVIARIKAVVKRLEVKKNTKE 128

Query: 128 TGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +     F+      D ++  V GE   L + E  IL  L  N  K  ++  I   ++   
Sbjct: 129 STTELTFAGIVINMDKKELTVDGEKVALTKTEFEILALLATNVDKVFSREDIIQTVWRE- 187

Query: 182 DEAVEENVVESHISKLRKKL 201
              + E  V+ HI++LRKK+
Sbjct: 188 TPYITERTVDVHIARLRKKM 207


>gi|306829063|ref|ZP_07462253.1| response regulator [Streptococcus mitis ATCC 6249]
 gi|304428149|gb|EFM31239.1| response regulator [Streptococcus mitis ATCC 6249]
          Length = 225

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QGEV  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +     +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLAGFIETKKGIGYGL 222


>gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
 gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
          Length = 238

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 13/139 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV---------SNNRAETGPIRVFSDGRDPEVQG 144
           G DD + KP   RE++ARV AI RR ++            R   G +++  D  +     
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTQIIAQENEQEEDGERIMIGDLKILPDHYEAYFNQ 155

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           E   L  +E  +L YL   +G+ + + Q+ SA++  +D A +  +V+ HIS LR+K+ + 
Sbjct: 156 EQLELTPKEFELLLYLAKYKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLREKIEHN 214

Query: 205 LGFDPVDSK--RFLGYSID 221
               PV  K  R LGY ++
Sbjct: 215 TR-KPVYIKTIRGLGYKLE 232


>gi|170690597|ref|ZP_02881764.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170145032|gb|EDT13193.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 340

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--- 121
           R   A  + PLI I      +     FD+G DDVV  P+  RE++ RV     R+++   
Sbjct: 66  RACYADRRAPLIVIGAGHDREAIARLFDAGADDVVLSPVDAREVMLRVHLALLRVQLQSA 125

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++  E G  R+        V G    L  RE  I   L + RG+ V++ QI  A++  
Sbjct: 126 DSSDTLECGAYRLDRRNCTVHVDGHAVRLTPREFAIAWLLFSRRGEYVSRRQIAGAVWSR 185

Query: 181 FDEAVEENVVESHISKLRKKL 201
            ++ +    +E HI KLRKKL
Sbjct: 186 SEDIIGRT-LEQHIYKLRKKL 205


>gi|148253503|ref|YP_001238088.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405676|gb|ABQ34182.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 235

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R      Q+P+I ++        +    +G DD + KP    E+LARV  + R
Sbjct: 62  IELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   S  R  T    G I +  + R     G    L   E R+LE+ + + G+  ++ Q+
Sbjct: 122 R--ASPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 180 LDSVWG-RDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|254296317|ref|ZP_04963774.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157805706|gb|EDO82876.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
          Length = 210

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 50  IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 108

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 109 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 166

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 167 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 206


>gi|329938083|ref|ZP_08287534.1| two component positive transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
 gi|329302572|gb|EGG46462.1| two component positive transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
          Length = 246

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 8/131 (6%)

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ------GEVFPL 149
           DD + KP H  E++ARV A+ RR + ++      P+R + D    E        G +  L
Sbjct: 117 DDYITKPFHIDEVVARVTAVLRRTRSADVLPHPPPLR-YGDLELDETTYCAHRAGRMVEL 175

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
              E  +L +L+ N G+ V K Q+   ++       E  VVE++IS LR+KL   LG   
Sbjct: 176 TPTEYALLRFLVRNGGRIVTKEQLLRHVWAYEHAPAESTVVETYISYLRRKL-APLGPPL 234

Query: 210 VDSKRFLGYSI 220
           + ++R +GY +
Sbjct: 235 ITTRRGVGYGL 245


>gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 244

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 9/139 (6%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +  P++ ++   ++   +     G DD V KP    E++AR+ AI RR +     AE  P
Sbjct: 87  THTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRRAR--GGAAEPSP 144

Query: 131 IRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             VF+D    E   EV+       L   E ++L Y MAN G+ ++K QI   ++  +D  
Sbjct: 145 RMVFADIELDEDSHEVWRAGKPISLSPTEFKLLRYFMANAGRVLSKAQILDHVWN-YDFR 203

Query: 185 VEENVVESHISKLRKKLRN 203
            +  +VES++S LR+K+ N
Sbjct: 204 GDAGIVESYVSALRRKVDN 222


>gi|113867801|ref|YP_726290.1| response regulator [Ralstonia eutropha H16]
 gi|113526577|emb|CAJ92922.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 232

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R +RA  +  P++ ++   +    +   + G DD + KP    E+ AR
Sbjct: 54  LMLPGADGLEICRRLRAEPRYTPILMLTARSTELDRVLGLEMGADDYLTKPFSVLELTAR 113

Query: 112 VAAIYRRLKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           V AI+R +    N    GP       + +  D R+  V+G    L  +E ++L Y  +N 
Sbjct: 114 VKAIFRLVDTLANPPSDGPRTVQVKALHIDIDKREVSVRGTPICLTAKEFQLLLYFASNP 173

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           G+  ++ Q+   ++G +  +  E+ V SHI++LR K+
Sbjct: 174 GRVFSRAQLLDQVWG-YSHSGYEHTVSSHINRLRAKI 209


>gi|121605996|ref|YP_983325.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594965|gb|ABM38404.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 219

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA  + VP++  +   ++   +   D+G DD V KP    E+LAR+ A+ RR 
Sbjct: 60  LDVLRALRARRASVPVLVATARDAVGDRIAGLDAGADDYVVKPYDIDELLARIRALLRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S  R E       + +    R+  V G+   L  RE  +LE L+A  G  +++ Q+  
Sbjct: 119 --SAGRGEPVFEHKGVSLNPATREATVHGQPVSLSAREWAVLEPLLARPGAVLSRAQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   D+ V  N VE +I  +RKKL N    D + + R LGY +
Sbjct: 177 KLFSWKDD-VSSNAVEVYIHGVRKKLGN----DFIQTVRGLGYVV 216


>gi|116621283|ref|YP_823439.1| two component heavy metal response transcriptional regulator
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116224445|gb|ABJ83154.1| two component heavy metal response transcriptional regulator,
           winged helix family [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 238

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 3/165 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VLE  R  +A    P++ +S   +L   +   + G DD + KP    E+LARV A+ 
Sbjct: 59  GLQVLEKMRSRKAGP--PVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALL 116

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR + +  R +   + +    R      E   L  +E  ILEY+M N+G+ +++T I   
Sbjct: 117 RRGQPTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEH 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ +  + +  N+V+ +I  LR K+ ++     + + R +GY I+
Sbjct: 177 VWDMDYDGL-TNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIE 220


>gi|167561730|ref|ZP_02354646.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167568964|ref|ZP_02361838.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 220

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 119 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216


>gi|148979669|ref|ZP_01815641.1| DNA-binding response regulator [Vibrionales bacterium SWAT-3]
 gi|145961646|gb|EDK26944.1| DNA-binding response regulator [Vibrionales bacterium SWAT-3]
          Length = 219

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 12/153 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P+I +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S + A    I 
Sbjct: 73  TPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGSAAPVLQIG 130

Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
             S D R  +V  QG+   L   E +++ Y M N+ K +++T++   IY   FD   + N
Sbjct: 131 DLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEHIYKQDFDR--DSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE  I ++RKK+  K+    + + R LGY ++
Sbjct: 189 TVEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|319760780|ref|YP_004124717.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330822700|ref|YP_004386003.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317115341|gb|ADU97829.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329308072|gb|AEB82487.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 241

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 7/169 (4%)

Query: 54  IGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +G G  VL   R  RA   + P++ ++        +   D+G DD + KP    E+ AR+
Sbjct: 68  LGSGLAVL---RAARARGDRTPVLVLTARDRTHERIAGLDAGADDYLGKPYDLAEVEARL 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A+ RR + + +R   G + +    R   + G    LP RE  +L  LM   G RV   +
Sbjct: 125 RALVRRSRGTQDRTVAGALVLDRHVRRFTLHGLPLELPAREFEVLWELMTPPG-RVVNKR 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             S     FDE + +N +E+ IS+LRKKL        + + R LGY ++
Sbjct: 184 TLSEKLSDFDETLGDNALEAFISRLRKKLAGSGAG--IRTLRGLGYMLE 230


>gi|219855601|ref|YP_002472723.1| hypothetical protein CKR_2258 [Clostridium kluyveri NBRC 12016]
 gi|219569325|dbj|BAH07309.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 237

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKVL 61
           ++IDD   +++    +  +DG S+  F ++   + LQ    E +   +   ++ + +   
Sbjct: 17  LVIDDDGYIRELICTVLKNDGFSV--FEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
              ++ R +  +P++ ++    L   +  F+ G DD + KP    E+L R+ A+ RR K 
Sbjct: 75  FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRRYKV 134

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++     G + +           E + +P +E  +L  L +  GK +++ ++   ++GL
Sbjct: 135 VASQTINIGNLAMDKSRYTVISNNENYDIPMKEFELLFMLGSYHGKTLSRNRLIEEVWGL 194

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D    E  ++ HI++LR++  + +    + + R LGY ++
Sbjct: 195 -DFEGNERTLDVHINRLRERFPSHVYKFKITTIRGLGYRLE 234


>gi|146306491|ref|YP_001186956.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574692|gb|ABP84224.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+     ++P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  + 
Sbjct: 63  LARLRDRGQRLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLG 122

Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             + +     V+  G R   ++GE   L  RE+ +LE ++A  G+ ++K Q+ + ++GL 
Sbjct: 123 GEQLQRCGDLVYDLGARRFSMKGEALSLTAREQAVLEAMIARPGRVMSKEQLAAQVFGL- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE    + +E +I +LRKKL    G   V + R LGY ++
Sbjct: 182 DEDASPDAIEIYIHRLRKKLEGS-GVRIV-TFRGLGYLLE 219


>gi|119513152|ref|ZP_01632202.1| OmpR subfamily protein [Nodularia spumigena CCY9414]
 gi|119462202|gb|EAW43189.1| OmpR subfamily protein [Nodularia spumigena CCY9414]
          Length = 231

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 29/224 (12%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEKVLELPR 65
           + L+ + Y+  +  DG           E WL  +S   +   AI  +L+ +    L+L +
Sbjct: 18  QVLISERYVVDWVTDGT----------EAWLCIESQWTDYTVAIVDWLLPEMSG-LQLCQ 66

Query: 66  IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
            +R H   +P++ ++     +  +   D+G DD + KP    E+LAR+ A+ RR      
Sbjct: 67  KLRLHQNPLPVLMLTALGQPENRVAGLDAGADDYLVKPFVMEELLARLRALQRRSPQLQP 126

Query: 119 --LKVSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             L V+    +T    ++V SDG  P     V PL  +E ++L YLM N  + +  +++ 
Sbjct: 127 STLTVAGFTLDTANNVLQVNSDGSTP----LVIPLTTKEFQLLMYLMQNPNRIIPGSKLR 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++ + +E +  NVV + +  LR+KL N     P+++    GY
Sbjct: 183 QQLWDMDEEPI-SNVVAAQMRLLRRKLANYGCPCPIETVPGAGY 225


>gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 247

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 22/222 (9%)

Query: 18  LFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLEL 63
           L  DD  SL    S  L +E W   SA +  +A+ +             ++   + +  L
Sbjct: 25  LVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSAREFRPDAVILDIMLPDVDGLSLL 84

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            RI R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   + 
Sbjct: 85  GRIRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAAL 144

Query: 124 NRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            R+E+    G + +  D  +    G+   L   E  +L YLM N  + ++K QI   ++ 
Sbjct: 145 ARSESLLVVGDLTLDEDSHEVTRGGDSIHLTATEFELLRYLMRNPRRVLSKAQILDRVWS 204

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +D   + NVVE +IS LR+K+    G  P + ++R  GY I
Sbjct: 205 -YDFGGQANVVELYISYLRRKI--DAGRAPMIHTRRGAGYLI 243


>gi|313835591|gb|EFS73305.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928691|gb|EFS92522.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970292|gb|EFT14390.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328908152|gb|EGG27911.1| response regulator [Propionibacterium sp. P08]
          Length = 226

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 11/201 (5%)

Query: 27  EGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF    +    + L++ +R     +   L+  G    E+ R +R    V +I ++   S
Sbjct: 24  EGFEVDTATSGSDGLETYSRNGADIVLLDLMMPGLPGTEVCRQLRQRGNVRIIMVTARDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRD 139
               +   + G DD V KP  HRE++AR+ A+ RR    ++VS +  E   +R+  +  +
Sbjct: 84  EIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGPEIEVSPDVLEESGVRMDVERHE 143

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             V+G    L  +E  +LE L+ N G+ + +  +   ++G  D   +   ++ HI +LR 
Sbjct: 144 VSVEGTTVRLALKEFDLLEVLLRNAGRVMTRASLIDRVWG-ADYVGDTKTLDVHIKRLRA 202

Query: 200 KLRNKLGFDPV--DSKRFLGY 218
           K+  K    PV   + R LGY
Sbjct: 203 KI-EKDSSRPVRITTVRGLGY 222


>gi|227496786|ref|ZP_03927057.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833702|gb|EEH66085.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 234

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 13/217 (5%)

Query: 10  LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L +DGY  +  +DG V++E      FEE  +    E +  +   L+       E+ R IR
Sbjct: 21  LRRDGYDVVEAEDGAVAVE-----LFEEAGRPGGGEPIDLVLLDLMLPRLSGTEVCRRIR 75

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNR 125
             S VP+I ++   S    +   + G DD V KP  +RE++ARV A+ RR +    +   
Sbjct: 76  RSSNVPVIMLTAKDSEVDKIVGLEIGADDYVTKPYSYRELVARVHAVLRRTREEEPAEPV 135

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E G + +  +  +  V GE   +P RE  +LE  + N  + + + QI   ++G      
Sbjct: 136 LEAGRVSMDVERHEVRVDGEPIAMPLREFELLELFLRNADRVLTRGQIIDRVWG-AGYVG 194

Query: 186 EENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           +   ++ H+ ++R K+  +   DP  + + R LGY +
Sbjct: 195 DTKTLDVHVKRIRAKIEREPS-DPTLLVTVRGLGYKL 230


>gi|288905343|ref|YP_003430565.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|306831423|ref|ZP_07464581.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325978330|ref|YP_004288046.1| transcriptional regulatory protein CiaR [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288732069|emb|CBI13634.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304426208|gb|EFM29322.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178258|emb|CBZ48302.1| Transcriptional regulatory protein CiaR [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 224

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K ++N      +
Sbjct: 73  TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKYNDNTLSYEEL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V +        G+   L  +E  +L Y + N+   + K+QIF  I+G FD     +VVE
Sbjct: 133 TVDTSTNTTIANGKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+       + + R +GY
Sbjct: 192 VYVSKIRKKLKGTTFAKNLQTLRSVGY 218


>gi|229191256|ref|ZP_04318244.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228592271|gb|EEK50102.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 228

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RRLKVS 122
           R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R    +
Sbjct: 66  RRIRKKSNVPIIMLTARVDEHDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSSAA 125

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N  AE    +  I V    R   + GE   L   E  I+ YLM N+G  +++ Q+ + I+
Sbjct: 126 NVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLINKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK 204
           G ++ A ++  V SHI  LR KL  K
Sbjct: 186 G-YEFAGDDRTVNSHIRNLRHKLGQK 210


>gi|225028279|ref|ZP_03717471.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353]
 gi|224954325|gb|EEG35534.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353]
          Length = 224

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 7/179 (3%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPS-LQTTLDFFDSGVDDVVNKP 102
           D   ++A L GK G +VL+  R  +  + V  +   D    + T LDF   G DD V KP
Sbjct: 46  DAILLDAMLPGKDGFEVLKEIRSQKIETPVMFLTARDQTEDIVTGLDF---GADDYVVKP 102

Query: 103 IHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
               E+LAR+  I +R    +    E   + + +D +     G    L  +E  ILEY++
Sbjct: 103 FSFEEVLARLRVIIKRSPQEHGTTYECADLLIDTDKKSVTRAGTDIELSPKEYAILEYMV 162

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N+   +++ QI S  +GL D   E N+++ +I  LRKK+ +      + + R +GY +
Sbjct: 163 RNKNIALSRLQIESNAWGL-DFEDESNIIDVYIRYLRKKIDDDFDVKLIQTVRGIGYML 220


>gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 229

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 20/220 (9%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           +L K+GY     D+G+  +G         + S+   D+  ++  L G      E+ R IR
Sbjct: 20  SLRKEGYEVAVADNGI--DGLR-------IFSAHGADLVLLDLMLPGMSGT--EVCREIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S VP+I ++        +   + G DD V KP   RE+LAR+ A+ RR   S    + 
Sbjct: 69  RTSSVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVLRRRHDSGEAEDD 128

Query: 129 GPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            P+R      D      EV+G+   LP +E  +LE L+ N  + + + Q+   ++G  + 
Sbjct: 129 APLRAAHLMMDVERHVVEVRGQEVALPLKEFELLEMLLRNVDRVLTRGQLIDRVWG-ANY 187

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
             +   ++ H+ +LR K+ +    +PV   + R LGY  +
Sbjct: 188 VGDTKTLDVHVKRLRAKIEDD-PRNPVHLVTVRGLGYKFE 226


>gi|225375673|ref|ZP_03752894.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM
           16841]
 gi|257437566|ref|ZP_05613321.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii
           A2-165]
 gi|225212443|gb|EEG94797.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM
           16841]
 gi|257199873|gb|EEU98157.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii
           A2-165]
 gi|295109640|emb|CBL23593.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 221

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120
           EL R IR  S VP+I +S        ++ F  G DD + KP    E+LAR+   + R  K
Sbjct: 62  ELIRTIRKFSNVPVIVVSAKSLTFNKVELFRLGADDYLTKPFDLDELLARIERNLLRSQK 121

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   + G + + +  +   V  E+  L  +E ++LE L     K  +K  ++ +I+ 
Sbjct: 122 CTPNLCLKFGELSIDTASKIVTVADEIIVLTAKEYQLLELLAKYPDKVFSKQNLYESIWQ 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
               A + +V+ +HIS LRKKLR++
Sbjct: 182 E-PFARDNDVINTHISNLRKKLRSE 205


>gi|191173324|ref|ZP_03034854.1| heavy metal response regulator [Escherichia coli F11]
 gi|190906441|gb|EDV66050.1| heavy metal response regulator [Escherichia coli F11]
          Length = 239

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 58  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 117

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +++ S  +          L R+E ++L  L +
Sbjct: 118 FSFSELLARVRAQLRQHHALNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLAS 177

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 178 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 233


>gi|28207681|gb|AAO32359.1| LanI [Streptomyces cyanogenus]
          Length = 261

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA SQ P+I ++   S    +    +G DD + KP   RE++AR+ AI RR++ 
Sbjct: 101 EVCRNIRASSQTPVIAVTARESELDRVLVLQAGADDCMTKPYGIRELMARMDAIMRRIQP 160

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E  P+R+  + R+  + G +  + R+E  +L  L +     + + Q+ + ++
Sbjct: 161 QWPLEQVIEHWPLRIDVNSREVRLDGRLIEVTRKEFDLLHLLASWPDTVIPRQQLTAQVW 220

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G     +    +++H+S LR KL
Sbjct: 221 G-DSVPLRGRTIDTHVSSLRSKL 242


>gi|322372348|ref|ZP_08046884.1| DNA-binding response regulator DltR [Streptococcus sp. C150]
 gi|321277390|gb|EFX54459.1| DNA-binding response regulator DltR [Streptococcus sp. C150]
          Length = 228

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 14/119 (11%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DGRDPE-VQ 143
            D+G DD + KP+  +E+LAR+ ++ RR       +ET   +V +      D  D E V 
Sbjct: 93  LDAGADDYLTKPMSLKELLARLRSLERRF------SETFTTKVLTLGSVCLDQEDQELVA 146

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           G    L  RE +++ Y M N  K+++   +F  I+   D+ V+E++V  +IS LR+KL+
Sbjct: 147 GNSIRLSSRETKLMAYFMHNPTKKLSTEHLFKTIWADEDD-VDESIVWVYISYLRQKLQ 204


>gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
          Length = 239

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AET--------GPIRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR K+      AE           +++  +  +   Q
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVAEAPDEDSILIAELKILPEFYEAYFQ 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202
           G    L  +E  +L YL  N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEK 214

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233


>gi|152984853|ref|YP_001347435.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150960011|gb|ABR82036.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 272

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 2/150 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           Q P++ ++   +LQ  LD FD+G DD + KP    E+L R+ A+ RR      R +   +
Sbjct: 123 QTPVLMLTALDTLQDKLDGFDAGADDYLLKPFELPELLVRLQALSRRRSGQAQRLQVDDL 182

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +  D R     G    L     +ILE LM      V + Q+  +++G  DE  E N + 
Sbjct: 183 VMDLDSRQVSRGGTPLALSPTAWKILECLMRASPALVTREQLGRSVWG--DEPPESNTLN 240

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            H+  LR  +        + +   +G+ ++
Sbjct: 241 VHMHHLRSTVDKGFATPLIHTLHSVGFQLE 270


>gi|238783526|ref|ZP_04627548.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri
           ATCC 43970]
 gi|238715581|gb|EEQ07571.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri
           ATCC 43970]
          Length = 220

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 107/221 (48%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +G + +   +    + L  S++  +  ++  L  +   VL
Sbjct: 3   LLIVEDDELLQRGIAMALTSEGYACDCAGTAAEAQGLLQSSQYSMVILDLGLPDQDGAVL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR + 
Sbjct: 63  -LRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  +   + +    +   +Q +   +  +E  IL  L+   G+ V +  +   +Y  
Sbjct: 122 QSDNLVQQDDLSLNLSTQQVWLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYTW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+ +  N +E HI  LR+    KLG D + + R +GY ++
Sbjct: 182 NDD-LGSNTLEVHIHNLRR----KLGKDRIRTIRGVGYRLE 217


>gi|330821407|ref|YP_004350269.1| two component transcriptional regulator, winged helix family
           [Burkholderia gladioli BSR3]
 gi|327373402|gb|AEA64757.1| two component transcriptional regulator, winged helix family
           [Burkholderia gladioli BSR3]
          Length = 226

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132
           P++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR       R   GP+ 
Sbjct: 74  PVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSNGHEQTRVACGPLE 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
             S      + GE   L  RER +LE L+   G+ + K  +   I+G+ DE+V  + +E 
Sbjct: 134 FDSVDGGFRLAGEPLALTPRERAVLEVLILRNGRAINKEALSEKIFGI-DESVNADAIEI 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ +LR+KL  + G   V + R LGY ++
Sbjct: 193 YVYRLRRKLEGR-GVAIV-TLRGLGYLLE 219


>gi|293402308|ref|ZP_06646445.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304155|gb|EFE45407.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 224

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 3/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + R +R +S++P++ ++   S    L   + G DD V KP + + +LAR++ I +R    
Sbjct: 63  ICREVRKNSELPIMIVTSRDSDMDELISMNLGADDFVTKPYNLQILLARISRILQRSYEH 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N+     I +         +G    L + E RI+  L  N+ K V++ ++   ++  
Sbjct: 123 ASSNQLMIHDIVLDISKSTLNWKGNSVDLTKNELRIMHCLFQNKNKIVSRNELMQHMWDC 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V++N +  +I++LRKKL      D + +KR +GY I
Sbjct: 183 -DLFVDDNTLTVNINRLRKKLEYLRLDDLIQTKRGMGYII 221


>gi|226199397|ref|ZP_03794955.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|225928473|gb|EEH24502.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
          Length = 217

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 57  IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 115

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 116 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 173

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 174 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 213


>gi|167761616|ref|ZP_02433743.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
 gi|167660759|gb|EDS04889.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
          Length = 226

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R IR  SQVP+I ++        L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  QTCREIRQSSQVPIIMLTARSEEHDELQGFELGVDEYISKPFSPKILVARVEAILRRSHA 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  + G I +       ++      L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 IGTGDVIDAGGIIIDKAAHQVKIDDTEIDLSFKEFELLAYFVENQGIALSREKILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL +K
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGDK 208


>gi|77917975|ref|YP_355790.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544058|gb|ABA87620.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
          Length = 224

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 3/170 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   +E+ + IR  S VP+I ++        L   + G DD + KP   RE++ARV
Sbjct: 54  LMLPGRDGMEICKEIRGFSDVPIIMVTARIEEIDRLLGLELGADDYICKPFSPREVVARV 113

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A+ RR    +N    G + +        + G    L   E ++L++L A+ G+  ++ Q
Sbjct: 114 KAVLRRSGGQSNLHSQG-LTLEEASLHANLNGCKLDLTAVEFKLLQHLAAHPGRIFSREQ 172

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +   IY      V +  ++SHI KLRKK+     G D + S   +GY  +
Sbjct: 173 LMDRIYA-DRRIVSDRTIDSHIKKLRKKMDTASPGVDLIRSVYGVGYKFE 221


>gi|83594517|ref|YP_428269.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577431|gb|ABC23982.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 229

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 6/132 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F++G DD V KP    E++ R+ A+ RR     +     GP+R+ +      V+G    L
Sbjct: 91  FEAGADDYVTKPFEMEEVVLRLKALIRRAAGHPSTELVAGPLRLDTTSGRGSVEGRPLDL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E +IL YL+  +G+ V+++ I   +Y   D   + NV++  + +LR+KL   L    
Sbjct: 151 TAQEYKILTYLLLRQGQTVSRSDIVDHVYD-RDSDRDSNVIDVLVGRLRRKLGAPL---- 205

Query: 210 VDSKRFLGYSID 221
           + + R LGY ++
Sbjct: 206 IHTVRGLGYRLE 217


>gi|77362080|ref|YP_341654.1| DNA-binding response regulator of two-component system
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876991|emb|CAI89208.1| DNA-binding response regulator of two-component system
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 223

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 12/222 (5%)

Query: 1   MFVL-IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGE 58
           MFVL ++D  ++ D         G+++E  ++L        S+  D+  ++  L  G G 
Sbjct: 1   MFVLLVEDDDVIADAICTYLTHQGLAVEHVSTLSAATTYMQSSNFDLCILDLNLPDGNGI 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             L   R  R    +P++ ++   ++   +     G DD + KP   RE+LAR+ ++ RR
Sbjct: 61  NWLSWLRDSRF--SLPVLILTASNTIDDKVIGLKKGADDYLVKPFDLRELLARLLSLKRR 118

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++SN     G ++   +     + G +  L R E  +L+  + +  + + ++Q+ + 
Sbjct: 119 ASDRLSNTITH-GALQYDLEQHKALLNGTLVCLSRNEDLLLQTFLNSPQQILTQSQLKNV 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +YG+ D+ V  N +  HI  LRK    KLG   +++ R LG+
Sbjct: 178 LYGVCDD-VASNALNVHIFNLRK----KLGAPAIETIRGLGF 214


>gi|327482737|gb|AEA86047.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri DSM
           4166]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+      +P++ ++    +   +   + G DD + KP    E+ ARV A+ RR    
Sbjct: 63  LARLRGRGKTLPVLMLTARGEVSDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVGG 122

Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             R +   + V+  D R   +  E   L  RE+ +LE L+A  G+ ++K Q+ + ++GL 
Sbjct: 123 GERQQRCGVLVYDLDARRFSLADEPLTLTSREQSVLEALIARPGRVMSKDQLAAQVFGL- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           DE    + +E ++ +LRKKL  +    PV   + R LGY ++
Sbjct: 182 DEDASADAIEIYVYRLRKKLEGQ----PVRIVTFRGLGYMLE 219


>gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 248

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R H   VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR 
Sbjct: 76  LEVMRRVRGHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S  +     E G +R+  D  +     +   L   E  +L YLM N  + ++K QI  
Sbjct: 136 GASEEKPASLLEVGDLRMDEDSHEVWRGDDEIQLTATEFELLRYLMRNPRRVLSKPQILD 195

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            ++  +D   + N+VE +IS LR+K+    G +P + + R +GY +
Sbjct: 196 RVWN-YDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVL 238


>gi|284045241|ref|YP_003395581.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949462|gb|ADB52206.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 245

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKV 121
           P   R  + +PL+ +S   +    L  F+ G DDV+ KP  + E+ AR+AA+ RR  L+ 
Sbjct: 82  PVASRIDATLPLLVLSGRANELHRLRTFERGADDVLPKPFSYPELRARIAALLRRAELRT 141

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R   G + V    R   + G   PL ++E  +L  L +   +   K ++   ++G +
Sbjct: 142 RRGRLRIGALEVDPAARTAHLHGRAVPLSQKEFGLLRTLASEATRVFTKDELLRNVWG-Y 200

Query: 182 DEAVEENVVESHISKLRKKL 201
                   ++SH  +LR+KL
Sbjct: 201 RNLGSTRTLDSHACRLRRKL 220


>gi|167574670|ref|ZP_02367544.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+  R +RA  S VP+I ++    +   +   ++G DD + KP    E+ ARV+A+ RR 
Sbjct: 60  LDFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLVKPFDLSELSARVSAVARRY 119

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N   + G + + +     +       L   E  +LE L+ + G  ++K+Q+ + +Y
Sbjct: 120 SGNPNPLVKLGELAIDTAVHSVKRGDARVDLTASEWALLETLIQHPGMILSKSQLEARLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              DE V  N +E H+S+LRK    KLG D +++ R LGY +
Sbjct: 180 SFNDE-VGSNTIEVHVSRLRK----KLGADMIETVRGLGYRL 216


>gi|332533733|ref|ZP_08409591.1| two component transcriptional regulator, winged helix family
           protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036788|gb|EGI73250.1| two component transcriptional regulator, winged helix family
           protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 7/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +L+  R   + S+V ++     P  Q  +     G DD + KP    E+ ARV A+ 
Sbjct: 59  GMSILQALRSSNSQSRVLILSARSEP--QDKISGLMKGADDYLTKPFSFEELHARVLALL 116

Query: 117 RRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR  + N  N    G   +    +    +     L   E +I+E L  N  +RV   ++ 
Sbjct: 117 RRGSLQNQQNTLTVGDCVLDLSLKTLHYKQHAIELTPNEYKIIECLF-NAPERVLGLELI 175

Query: 175 S-AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           S A+ G FD  + +N +E+HIS +RKK+R   G  P+ +KR  GY
Sbjct: 176 SEAVVGQFD-MLSKNALEAHISTIRKKVRQFDGELPIKNKRGFGY 219


>gi|300088022|ref|YP_003758544.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527755|gb|ADJ26223.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL + IR  S VP+I ++        +   + G DD + KP    E ++R  A+ RR +
Sbjct: 62  LELLKDIRQISSVPVIILTVRDEEADVVRGLELGADDYITKPFRQMEFVSRAKALLRRHQ 121

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       GP++  +  R     G+   L   E ++L  L  NRGK V+   I +AI+
Sbjct: 122 AGDTSLPVTIGPLQFSASRRKITADGKTIKLTATEGKMLYLLARNRGKAVSHDAISNAIW 181

Query: 179 G--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G  + D A   N +  H+  LR+KL+     D + ++   GY
Sbjct: 182 GEKIPDAA---NSIRVHMRNLRQKLQKIDMGDIIATRSGAGY 220


>gi|269837466|ref|YP_003319694.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786729|gb|ACZ38872.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 254

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 20/158 (12%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------------LKV 121
           PLI +S+  S +  +  F+ G DD + +P    E++ARV A+ RR            LKV
Sbjct: 74  PLIFVSEQGSTRAKVRAFEHGADDFIVEPYDPAELVARVGAVARRCQRADYQAMGTVLKV 133

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + V   GR+P +      L   E R+LE LM N    +++  +    +G +
Sbjct: 134 GDVELAIGELTVRVAGREPVL------LTPTEMRLLECLMRNSQITISRETLIERTWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           D   E N V+ +IS+LRKKL R+    + + + R +GY
Sbjct: 187 DFVGESNRVDVYISRLRKKLERDPAAPEYLHTVRGVGY 224


>gi|239942785|ref|ZP_04694722.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989244|ref|ZP_04709908.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 248

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 22/209 (10%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +  +A+ A             ++   + +  L R+ R ++ VP++ +
Sbjct: 39  ALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGLAVLGRLRREYADVPVLFL 98

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAET----GPIR 132
           +   +++  +    +G DD V KP    E++AR+  + RR    V+  R E+    G + 
Sbjct: 99  TARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGSAVAAGRGESTLTVGDLV 158

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  D  +    GE   +   E  +L +LM N  + ++K QI   ++  +D   + NVVE 
Sbjct: 159 LDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQILDRVWN-YDFGGQANVVEL 217

Query: 193 HISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +IS LRKK+    G  P + ++R  GY I
Sbjct: 218 YISYLRKKI--DAGRTPMIHTRRGAGYLI 244


>gi|169335564|ref|ZP_02862757.1| hypothetical protein ANASTE_01979 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258302|gb|EDS72268.1| hypothetical protein ANASTE_01979 [Anaerofustis stercorihominis DSM
           17244]
          Length = 226

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 26/228 (11%)

Query: 14  GYIALFGDDG-------VSLEGFNS----LEFEEWLQSSARED---VSAIEAFLIG-KGE 58
            YI +  DD         SLE FN      E  E +  + +E+   +  ++  L G  G 
Sbjct: 3   NYIYVVEDDNNISELLKCSLEAFNYYVKVFENCEDMMIALKEEKPKLMLLDIMLPGMSGI 62

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             L+L +    +  +P+I +S   S    ++  + G DD V KP    E+ +R+ ++ RR
Sbjct: 63  DALKLLKNSNKYKSIPIIILSAKSSEIDKVNALELGADDYVTKPFSVLELSSRIKSVLRR 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             KV +N      I +  +       GE   L ++E +IL Y++ N+G+ V + ++ + +
Sbjct: 123 SYKVEDNILNYKDITIDKENYLVSHDGEEVILTKKEYKILLYMLENKGRVVTREELLNEV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-----FDPVDSKRFLGYSI 220
           +G +D   E   ++ H+    K LRNK+G     +  + + R +GY +
Sbjct: 183 WG-YDFEGESRTLDMHM----KTLRNKIGSEDDKYKYIKTIRGIGYKL 225


>gi|160946255|ref|ZP_02093466.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270]
 gi|158447778|gb|EDP24773.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270]
          Length = 226

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 4/172 (2%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            ++ K + +  L  I    + +P+I ++    L+  +   D G DD + KP   +E+LAR
Sbjct: 52  IMMPKVDGITVLKTIRENGNSIPVIMLTAKSELEDKVIGLDCGADDYLTKPFEVKELLAR 111

Query: 112 VAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + AI RR + V++N    G I +     +   +   + L  +E ++LE LM+     ++ 
Sbjct: 112 LRAITRRKETVTDNVLTFGNITLNRTNFELSSEKGSYKLTNKEFQMLEMLMSTPSNIISA 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
                 I+G +D   + +VV  +IS LRKKL  KL  D  +   R +GYS++
Sbjct: 172 DTFMDKIWG-YDTDSDISVVWVYISYLRKKLA-KLDADVEIKVTRNVGYSLE 221


>gi|157146166|ref|YP_001453485.1| DNA-binding transcriptional regulator PhoP [Citrobacter koseri ATCC
           BAA-895]
 gi|157083371|gb|ABV13049.1| hypothetical protein CKO_01922 [Citrobacter koseri ATCC BAA-895]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 104/218 (47%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQDLGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R++   +P++ ++     Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 63  LIRRWRSNDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVVARMQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVISIPPFQVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQARYPDDVITTVRGQGY 219


>gi|197119661|ref|YP_002140088.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197089021|gb|ACH40292.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   LE+ + IR  SQ+P+I I+        L   + G DD + KP   RE++ARV  + 
Sbjct: 58  GRDGLEICKEIRTFSQLPIIMITARVEEIDRLLGLELGADDYICKPFSPREVVARVKTVL 117

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR       A+T  + + +D       G    L   E ++L +L  N G+  +++Q+   
Sbjct: 118 RRTG-EQAPAQTHGLTLDADRYLALFHGHDLELTVVEFKLLHFLYQNPGRIYSRSQLMDR 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           IY      V +  ++SHI KLRKK+
Sbjct: 177 IYS-DQRIVSDRTIDSHIKKLRKKI 200


>gi|70733391|ref|YP_263166.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens Pf-5]
 gi|330806802|ref|YP_004351264.1| phosphate regulon response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|68347690|gb|AAY95296.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens Pf-5]
 gi|327374910|gb|AEA66260.1| Phosphate regulon response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 229

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G++ +E E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYDCMEAENSQQAHAIIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   ++  A   PI V     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRAGPTDGEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|297624289|ref|YP_003705723.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297165469|gb|ADI15180.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 236

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 15/207 (7%)

Query: 23  GVSLEGF---NSLEFEEWLQSSARE--DVSAIEAFLIGK-GEKVLELPRIIR-AHSQVPL 75
           G+  EGF    +    E L+  A+E  DV  ++  L G  G +VLE  R       +V +
Sbjct: 32  GLGFEGFEVVTAASASEGLRLFAQEAIDVVILDILLPGSDGYRVLEAIRTPHNPKREVAV 91

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135
           + ++   +++  +     G DD + KP    E++AR+ A++RRL+          +R++ 
Sbjct: 92  LFLTALDTIEDRVRGLRLGADDYLVKPFSLAELVARIEALWRRLQRPVTALCAADVRLYP 151

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
           D R+    G    L  +E  +L+ L+ +R + V++  +   ++G   E V+ N +E H+S
Sbjct: 152 DKREAWRGGVPLELAPKEFALLQVLLEHRARVVSREALMQRLWG---ERVDPNTLEVHVS 208

Query: 196 KLRKKLRNKLGFDP-VDSKRFLGYSID 221
            LR+     LG  P + + R  GY +D
Sbjct: 209 SLRR----ALGDPPMIRTVRGYGYLLD 231


>gi|295688443|ref|YP_003592136.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295430346|gb|ADG09518.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 11/170 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +V+E  R  R   Q P++ +S    +   +    +G DD + KP    E++ARV A+ 
Sbjct: 59  GVQVVETLR--REGDQTPVLFLSALGEINDRVTGLRAGADDYLVKPYAFPELMARVEALS 116

Query: 117 RRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR +        + G + +    R    QG+   L  RE ++LE++M + G+ V +T + 
Sbjct: 117 RRRETGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLL 176

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
             ++   FD   + NV++ HIS+LR K+    GFD   + + R  GY +D
Sbjct: 177 EKVWEYHFDP--QTNVIDVHISRLRSKIDK--GFDRAMLQTVRGAGYRLD 222


>gi|238059275|ref|ZP_04603984.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881086|gb|EEP69914.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 230

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 10/133 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFP 148
           G DD V KP    E++ARV A+ RR+  S     TG +R      D E       G +  
Sbjct: 98  GGDDYVTKPFSVEELVARVRAVLRRIG-STPVPATGVLRYADLELDEETCEVRRGGRLLS 156

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207
           L   E ++L +LM N G+ +++ QI  A++   FD A   NVV+++I  LR+KL + LG 
Sbjct: 157 LSPTEYKLLRHLMLNPGRVLSRAQILDAVWRYDFDGA--SNVVDTYIGYLRRKL-DPLGP 213

Query: 208 DPVDSKRFLGYSI 220
             ++++R  GY++
Sbjct: 214 PLIETRRGFGYAL 226


>gi|209523018|ref|ZP_03271575.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209496605|gb|EDZ96903.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 231

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 16/217 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + LV + YI  +  DGV  + ++ LE  +W   +      AI  +L+ +    LEL + I
Sbjct: 18  QVLVNEKYIVDWVTDGV--QAWHCLE-SQWTDYTV-----AILDWLVPELSG-LELCQRI 68

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R+H   +P++ ++     +  +  FD+G DD + KP    E+LAR+ A+ RR      + 
Sbjct: 69  RSHQNPLPILMLTALGQPENRITGFDAGADDYLVKPFVMAELLARLRALQRRSPTLQPQT 128

Query: 127 ETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            T    +     +          ++ PL  +E +I  YLM N  + +  ++I   ++ L 
Sbjct: 129 LTVGAFMLDYANNTICNRLTQPPKMIPLTVKEFQIFAYLMQNPDRIIPGSKIRYQLWDLE 188

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +E +  NVV + +  LR+KL +     P+++ R  GY
Sbjct: 189 EEPI-SNVVAAQMRLLRRKLASYDCGCPIETIRGQGY 224


>gi|134294163|ref|YP_001117898.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137320|gb|ABO53063.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A +    + L   +  +++     E  + +  + R D   ++  L G  G++V
Sbjct: 3   LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R+ R +  VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR  
Sbjct: 63  L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRRA 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V   +   G +      R+      +  L RRE  ILE LM  + K V+K ++  +++ 
Sbjct: 121 GVGTAQLVCGDLVYAFGTREFRCGDALLALRRREHAILETLMLQQSKTVSKARLMDSVFA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L DE    + ++ +I +LRK L        + + R LGY
Sbjct: 181 LDDEP-SADAIDIYIHRLRKHLAGSTA--EIITLRGLGY 216


>gi|123441447|ref|YP_001005434.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088408|emb|CAL11200.1| two-component system response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 239

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 9/182 (4%)

Query: 36  EWLQSSA------REDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           +WL + A      R+   AI    L+  G   + + R IR  S VP++ ++        L
Sbjct: 39  QWLTNGAEVVAAVRQSPPAIILLDLMLPGSDGISICREIRRFSDVPIMMVTAKTEEIDRL 98

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVF 147
              + G DD + KP   RE++ARV  I RR +    + +E+ P+ +         QG + 
Sbjct: 99  LGLEIGADDYICKPYSPREVVARVKTILRRCQQQREQPSESAPLIIDESRFQASYQGHLL 158

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E R+L+ L    G   ++ Q+ + +Y  +   V +  ++SHI  LR+KL    G 
Sbjct: 159 ELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKLEALDGE 217

Query: 208 DP 209
            P
Sbjct: 218 KP 219


>gi|91792622|ref|YP_562273.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91714624|gb|ABE54550.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 243

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 2/149 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132
           P++ ++   S Q  +   D+G DD + KP H  E+LAR+ A+ RR    +++    GP  
Sbjct: 74  PILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAAGKASSLVSNGPFS 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V     + +    +  L   E ++ E+LM + G+  +K+ +   IY   D  ++ NV+E 
Sbjct: 134 VNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYDQ-DFDLDSNVIEV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I +LRKKL     +  +++ R  GY ++
Sbjct: 193 FIRRLRKKLDPDNQYQLIETLRGQGYRLN 221


>gi|27378858|ref|NP_770387.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27352007|dbj|BAC49012.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 29/210 (13%)

Query: 28  GFNSLEFEEWLQSSA---REDVSAIE-AFLI-------GKGEKVLELPRIIRAHSQVPLI 76
           G ++  +E  + SSA   RE V ++  A +I       G G  VL   R  R    +P++
Sbjct: 19  GLSAAGYESDIVSSAAEAREAVGSVSYAAMILDLGLPDGDGLSVLRELR--RQMEPLPVL 76

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAET 128
            ++    LQ  ++   SG DD + KP    E++AR+ AI RR        L+++N   +T
Sbjct: 77  VLTARGGLQDRVNGLRSGADDYLAKPFAMEELVARLEAILRRPGQLLGRSLRLANLVYDT 136

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
              ++F D + P +      +  RE  +LE L+  +G+ V K  +   I+GL  E V  N
Sbjct: 137 ESRQIFIDDQ-PRI------ISAREASVLEILLRRQGRVVPKKNVEDHIFGLEGE-VASN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            VE ++S+LRK+L        + + R +GY
Sbjct: 189 AVEVYVSRLRKQLTEHGAKVVIHTIRGVGY 218


>gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
 gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 14/202 (6%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDY 81
           G   E   + + E+ L+   R D+  ++  L    G KVLE   + R   ++P++ ++  
Sbjct: 22  GAGFEVLEAKDGEKALELFPRADLIILDLMLPKLDGFKVLE--EVRRERPELPILMLTAR 79

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141
              +  +   + G DD V KP   +E++ARV A+ RR  +       GP+R+    R   
Sbjct: 80  GEEEERVKGLELGADDYVVKPFSPKEVVARVKALLRRAGLKEELC-YGPLRLLPKERQAY 138

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++G+  PL + E  +L  L  + G    + ++   ++G  D    + VV+ HI+ LRKKL
Sbjct: 139 LEGKPLPLSQLEFDLLLTLAQHPGMVFTRERLLEKVWG-PDFPGIDRVVDVHIAALRKKL 197

Query: 202 RNKLGFDP-----VDSKRFLGY 218
            +    DP     +++ R +GY
Sbjct: 198 MD----DPENPRFIETVRGVGY 215


>gi|332162605|ref|YP_004299182.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318606705|emb|CBY28203.1| response regulator BaeR [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325666835|gb|ADZ43479.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 239

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 9/182 (4%)

Query: 36  EWLQSSA------REDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           +WL + A      R+   AI    L+  G   + + R IR  S VP++ ++        L
Sbjct: 39  QWLTNGAEVVAAVRQSPPAIILLDLMLPGSDGISICREIRRFSDVPIMMVTAKTEEIDRL 98

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVF 147
              + G DD + KP   RE++ARV  I RR +    + +E+ P+ +         QG + 
Sbjct: 99  LGLEIGADDYICKPYSPREVVARVKTILRRCQQQREQPSESAPLIIDESRFQASYQGHLL 158

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E R+L+ L    G   ++ Q+ + +Y  +   V +  ++SHI  LR+KL    G 
Sbjct: 159 ELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKLEALDGE 217

Query: 208 DP 209
            P
Sbjct: 218 KP 219


>gi|215482948|ref|YP_002325153.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB307-0294]
 gi|301510477|ref|ZP_07235714.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AB058]
 gi|213989068|gb|ACJ59367.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB307-0294]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
           +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + +  
Sbjct: 64  QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ + FD
Sbjct: 124 NELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNINFD 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
              + N ++  + +LR K+    G++P  + + R LGY I
Sbjct: 184 --TDTNFIDVAVRRLRSKIDE--GYEPKLIHTIRGLGYKI 219


>gi|182419726|ref|ZP_02950967.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237665523|ref|ZP_04525511.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376463|gb|EDT74044.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237658470|gb|EEP56022.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR HS +P+I ++     +  L  F+ G D+ + KP  +   +AR+  I +++K
Sbjct: 63  FEVLKEIREHSDIPIIMLTALGDEKHELLGFNKGADEYIGKPFSYEVFIARLNNIAKKIK 122

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  T G I +          G    L  +E  +L Y + N  K + + QI ++++G
Sbjct: 123 HDTEKEITYGKIIINQSNHKVISNGLEIKLNHKEYTLLIYFIKNSSKVLTREQILNSVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   +++HI  LR KL+ +  +  + + R  GY I+
Sbjct: 183 -YDFDGDIRTIDTHIKTLRAKLKTEGTY--IKTVRGCGYMIE 221


>gi|167579987|ref|ZP_02372861.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|167618057|ref|ZP_02386688.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257140105|ref|ZP_05588367.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 119 --QSGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216


>gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 232

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 99/203 (48%), Gaps = 19/203 (9%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           +  N LE E+W       D+  ++  +    G +VL   R+   +S+ P+I ++   S+ 
Sbjct: 36  QALNLLESEDW-------DLVLLDVMIPCLSGLEVLRRYRM--RNSRTPVILLTARNSVL 86

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP--------IRVFSDG 137
             ++  D G +D + KP +  E+LAR+ A  R   +   ++E           + V +  
Sbjct: 87  DKVNGLDHGANDYITKPFNIEELLARIRAALRTGALHTGKSENSKKHEYALADLLVNTAT 146

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R     G+   L +RE  +L YL+ N+   + + Q+ + ++G F+ A + NVV+ +I  L
Sbjct: 147 RQVTRGGKPIELTKREFDLLCYLLKNKRIVLNREQLLNEVWG-FEYAGDTNVVDVYIGYL 205

Query: 198 RKKLRNKLGFDPVDSKRFLGYSI 220
           RKK+ +      + + R +GY++
Sbjct: 206 RKKIDHGHETALIHTVRGVGYTM 228


>gi|104784065|ref|YP_610563.1| DNA-binding response regulator CreB [Pseudomonas entomophila L48]
 gi|95113052|emb|CAK17780.1| two-component response regulator CreB [Pseudomonas entomophila L48]
          Length = 226

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R +R  S+VP++ +S   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCRQLRRFSEVPVMFLSARDAEIDRVLGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                AE  P ++ +       +G+   L R E R+L+ L+    +  ++ Q+   + G+
Sbjct: 122 RPEPVAEVAPFQLDTLAMRIVYRGQPLALTRHEFRLLQCLLEQPRRVFSREQLLDGL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             +   E  ++SHI  LR KLR      +P+ + R LGYS
Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRLVASEAEPIQTHRGLGYS 220


>gi|299138867|ref|ZP_07032044.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298599021|gb|EFI55182.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 227

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 8/157 (5%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + I+A S   P+I +S    +   +   ++G DD V KP   RE+LARV A  RR +
Sbjct: 62  EVCKEIKAWSPDTPVIILSAISEVADKVLLLETGADDYVTKPFSPRELLARVQAAMRRTR 121

Query: 121 VSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          V  D    EV   G + PL   E ++L + + N G+ +A+ ++ S ++
Sbjct: 122 RTVQEPPLNFGNVTVDFLKMEVYKAGSLVPLTAHEFKLLRFFLDNPGRAIARDELLSGVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           GL +  +    V++ I KLR+KL      DP +   F
Sbjct: 182 GL-NFHLTTRTVDNQILKLRQKLEA----DPANPVHF 213


>gi|295693362|ref|YP_003601972.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031468|emb|CBL50947.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 238

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 12/194 (6%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+ +  +D  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 38  LEDALSQDFDAILLDLMLPDLNGLEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPIRVFSDGRDPEVQ----------GEV 146
            + KP    E+LAR+ A+ RR+K+  + ++ T   +     +D  ++          G+ 
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVKIEKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKA 157

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L +RE  +L  L+ N+   V++ Q+ + I+G  +  +E NVVE ++  LR K+     
Sbjct: 158 IDLTKREYNLLMTLIENKNNVVSRDQLLNKIWG-PESNIETNVVEVYVRYLRNKIDTPGQ 216

Query: 207 FDPVDSKRFLGYSI 220
              + + R  GY +
Sbjct: 217 PSYIKTVRGTGYMV 230


>gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
 gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
          Length = 238

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 11/138 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV---------SNNRAETGPIRVFSDGRDPEVQG 144
           G DD + KP   RE++ARV AI RR ++            R   G +++  D  +     
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTQIIAQENEQEEDGERIMIGDLKILPDHYEAYFNQ 155

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RN 203
           E   L  +E  +L YL   +G+ + + Q+ SA++  +D A +  +V+ HIS LR+K+ +N
Sbjct: 156 EQLELTPKEFELLLYLAKYKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLREKIEQN 214

Query: 204 KLGFDPVDSKRFLGYSID 221
                 + + R LGY ++
Sbjct: 215 TRKPVYIKTIRGLGYKLE 232


>gi|317132810|ref|YP_004092124.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470789|gb|ADU27393.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 13/167 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IRA S VP++ ++       T+   D G DD V KP     +L+R+ A  RR   
Sbjct: 61  DLCKEIRAFSDVPILFLTSCDDEANTITALDGGGDDYVTKPFKLDVLLSRIRAHLRR--- 117

Query: 122 SNNRAETGPIRVFSDG-RDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIF 174
              R    P   F  G R  + QG  F       L   E R+L  L  N G  + + Q+ 
Sbjct: 118 ---RNTQPPQAPFCGGVRLDDAQGRAFAAEQDLRLTLTEYRLLSLLTRNAGLILKRGQLL 174

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A++    + V++N +  HI  LR+KL        + + R LGY ++
Sbjct: 175 DALWDGKGDFVDDNTLSVHIRHLREKLSTAGSGVSIRTVRGLGYRLE 221


>gi|256820277|ref|YP_003141556.1| two component transcriptional regulator, winged helix family
           [Capnocytophaga ochracea DSM 7271]
 gi|256581860|gb|ACU92995.1| two component transcriptional regulator, winged helix family
           [Capnocytophaga ochracea DSM 7271]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 10/154 (6%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++L+  R ++ +  V +I   D  S++  +   + G DD + KP H  E+LARV +
Sbjct: 57  GSGMQLLDELRAMKKNHSVLIISAKD--SVEDKVLGLEKGADDYLAKPFHLAELLARVKS 114

Query: 115 IYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           I RR    N + E       ++ F + R  +V      L R+E  +L Y +    + V K
Sbjct: 115 IIRR---KNQQGEEVITLKNVQFFPETRTVKVGDTTLTLNRKEYDLLYYFIIRPERLVEK 171

Query: 171 TQIFSAIYGLFDEAVEE-NVVESHISKLRKKLRN 203
           T +  A++G + + V+  + + S I  LRKKL+ 
Sbjct: 172 TTLAEAVWGDYIDQVDSLDFIYSQIKNLRKKLKT 205


>gi|228913340|ref|ZP_04076973.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846249|gb|EEM91268.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTTDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220


>gi|262203938|ref|YP_003275146.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087285|gb|ACY23253.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 231

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 10/155 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  + VP+I +S        +   D+G DD V KP    E LAR+ A  RR  VS+   
Sbjct: 70  LRGWTTVPVIVLSARSDAADKVSALDAGADDYVTKPFGMEEFLARLRAAVRRGAVSSGLP 129

Query: 127 E-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           E      G  +V    +     GE   L   E  ILE L+ N GK V++ +I ++++G  
Sbjct: 130 EVPMVDAGSFQVDLAAKQVTRHGERIHLTPTEWEILEILVRNEGKLVSQKEILNSVWGPT 189

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
               + N +  +++ LR+KL +    DPV  +  +
Sbjct: 190 YLG-QSNYLRVYLASLRRKLED----DPVHPRHLI 219


>gi|184158807|ref|YP_001847146.1| response regulator [Acinetobacter baumannii ACICU]
 gi|332875177|ref|ZP_08443010.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6014059]
 gi|183210401|gb|ACC57799.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|322507380|gb|ADX02834.1| Putative two-component response regulator [Acinetobacter baumannii
           1656-2]
 gi|323518722|gb|ADX93103.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332736621|gb|EGJ67615.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6014059]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GEKVL   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  
Sbjct: 59  GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116

Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R+  ++     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  
Sbjct: 117 RKQTLNQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A+Y  + E +E N +E  I +LRK    K+G   + + R LGY +
Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216


>gi|291534760|emb|CBL07872.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD    ++ + +HI  +R K  +   + P+ +   +GY
Sbjct: 180 FDSESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216


>gi|288549514|ref|ZP_05967289.2| DNA-binding response regulator PhoP [Enterobacter cancerogenus ATCC
           35316]
 gi|288318237|gb|EFC57175.1| DNA-binding response regulator PhoP [Enterobacter cancerogenus ATCC
           35316]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E  L L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ 
Sbjct: 58  EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALL 117

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +  
Sbjct: 118 RRNSGLASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 177

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y    E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 178 QLYP-DAELRESHTIDVLMGRLRKKIQAQYPQDVITTVRGQGY 219


>gi|283798526|ref|ZP_06347679.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1]
 gi|291073786|gb|EFE11150.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1]
 gi|295090137|emb|CBK76244.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 15/214 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L+ +GY A+  + G++            L+    E V  I + ++  G    EL   +R
Sbjct: 20  VLLNNGYCAIPAESGLA-----------ALKILDTEYVDLIISDIMMPGMDGYELIETLR 68

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
                +P++ I+     +     F +G DD + KPI   E++ R+ A+ +R ++S  R  
Sbjct: 69  VSGYTLPILIITAKERFEDKQRGFLAGTDDYMVKPIDVNEMVLRIGALLKRARISTERKI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G   +  D       GE   LP++E  +L  LM+   K   + Q+   I+G+ D   +
Sbjct: 129 ICGKTVLNYDALTVTFNGEELLLPQKEFYLLYKLMSYPNKIFTRQQLMDEIWGV-DSQSD 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E  V+ HI++LR++ ++   F  + + R LGY +
Sbjct: 188 ERTVDVHINRLRERFKDCDDFQ-ILTVRGLGYKV 220


>gi|218256845|ref|ZP_03474359.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225919|gb|EEC98569.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii
           DSM 18315]
          Length = 255

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 8/151 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  + R     + +P+I ++   +    L  F+ G DD ++KP   R+++ARV A+ 
Sbjct: 88  GFKMASILRKEEKTADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVL 147

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR        E   ++  +   D +     V G+  PL ++E  IL+ L+ N+G   ++ 
Sbjct: 148 RRTSDKEKVQENECLKYETLSLDTKRIKASVDGQEVPLTKKEFEILKLLLENKGNVFSRE 207

Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           +I S I+   DE  V +  ++ +I++LRKK+
Sbjct: 208 EILSRIWK--DEVYVLDRTIDVNITRLRKKI 236


>gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
          Length = 236

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 17/188 (9%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHS-QVPLIG 77
            +L  E W  ++A++ + A+        + V+   ++PR+        +RA   ++P++ 
Sbjct: 28  QALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLETLERLRARDPELPVLF 87

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRV 133
           ++   ++   +    +G DD V KP    E+ ARV  + RR   +   A T      + +
Sbjct: 88  LTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGRTQQAASTVLQVADLTL 147

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D  D    GE   L   E  +L YLM N G  ++K +I  A++  +D   + NVVE +
Sbjct: 148 DVDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAVWS-YDFGGQVNVVELY 206

Query: 194 ISKLRKKL 201
           IS LRKK+
Sbjct: 207 ISYLRKKI 214


>gi|77457581|ref|YP_347086.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381584|gb|ABA73097.1| two component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+      +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  + 
Sbjct: 63  LARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLG 122

Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             R +   +  +  D R   +  E+  L  RE+ +LE L+A  G+ ++K Q+ + ++GL 
Sbjct: 123 GERQQRCGVLAYDLDTRRFTLGDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFGL- 181

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE    + +E ++ +LRKKL
Sbjct: 182 DEEASPDAIEIYVHRLRKKL 201


>gi|157162501|ref|YP_001459819.1| DNA-binding transcriptional regulator QseB [Escherichia coli HS]
 gi|157068181|gb|ABV07436.1| transcriptional regulatory protein QseB [Escherichia coli HS]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + G+   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|315647246|ref|ZP_07900359.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277448|gb|EFU40777.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 232

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 21/192 (10%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGI 78
           + L+ + +   SA +   A+  F  GK + +L    LP+I         R  S+VP++ I
Sbjct: 20  SQLQQDHYHVDSAHDGEEAVALFHSGKFDLILLDLMLPKINGMDLLRHFRESSKVPVLII 79

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAETGPIRVFS 135
           S   S          G DD ++KP    E+ ARV A  RR  +   +++++   P+  F 
Sbjct: 80  SAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATLYAETDSKSAEPPVISFK 139

Query: 136 D------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           D          +V+G   PL  +E  IL+ LM N  +   K QI+  I+   D    ENV
Sbjct: 140 DLILDLHSFSVKVRGHHVPLTSKEFHILKLLMTNHSRVFTKEQIYQFIWE-DDYYGNENV 198

Query: 190 VESHISKLRKKL 201
           +  HI +LR+K+
Sbjct: 199 INVHIRRLREKI 210


>gi|294339218|emb|CAZ87572.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As]
          Length = 258

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 70/138 (50%), Gaps = 20/138 (14%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---DPEVQ---- 143
            D+G DD V KP    E+ AR+ A+ RR   +  RAE     VFS GR   +P       
Sbjct: 91  LDAGADDYVLKPYDLDELSARIRALLRR---AAGRAEP----VFSYGRISLNPATHEALL 143

Query: 144 -GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            GE   L +RE  +LE L+A  G  +++ Q+   +Y   DE +  N VE ++  LRK   
Sbjct: 144 DGEPVALSQREWAVLEALIARPGMILSRAQLEEKLYSWKDE-ISSNAVEVYVHSLRK--- 199

Query: 203 NKLGFDPVDSKRFLGYSI 220
            KLG D + + R +GY I
Sbjct: 200 -KLGPDLIRNIRGMGYMI 216


>gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 231

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 23/176 (13%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
            EL + +R  S +P+I +S   +    +   D G DD + KP +  E++ARV + + R+ 
Sbjct: 62  FELTKRVRITSSIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNLRRKY 121

Query: 120 KVSNNRAETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           K+ +   ++G +        D +   +Q  GE   L   E +IL  LM   G+   K QI
Sbjct: 122 KLDSTAHQSGELLTVGELTLDTKKFTLQKNGEDIQLTPTEFKILSTLMEKPGRVFTKAQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK--------RFLGYSID 221
           +  I G + E  ++N +  HISKLR+KL +       DSK        R LGY I+
Sbjct: 182 YERINGEYFEN-DDNTMMVHISKLREKLGD-------DSKRPKYLKTVRGLGYKIE 229


>gi|229167490|ref|ZP_04295228.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
 gi|228616052|gb|EEK73139.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 9/164 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR  
Sbjct: 61  LEVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRR-- 118

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N   +      F D       R    + E   L  +E  +L   M N  + + +  + 
Sbjct: 119 EENTEQKHASFLSFKDLQLQIESRTITKENEEIELTNKEFELLLMFMKNINRVLTRDILL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++G +D  VE N+V+ ++  LR KL +    + + + R  GY
Sbjct: 179 DQVWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221


>gi|226324201|ref|ZP_03799719.1| hypothetical protein COPCOM_01980 [Coprococcus comes ATCC 27758]
 gi|225207750|gb|EEG90104.1| hypothetical protein COPCOM_01980 [Coprococcus comes ATCC 27758]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD    ++ + +HI  +R K  +   + P+ +   +GY
Sbjct: 180 FDSESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216


>gi|225018950|ref|ZP_03708142.1| hypothetical protein CLOSTMETH_02901 [Clostridium methylpentosum
           DSM 5476]
 gi|224948294|gb|EEG29503.1| hypothetical protein CLOSTMETH_02901 [Clostridium methylpentosum
           DSM 5476]
          Length = 222

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 13/168 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R ++     P+I ++        +   D G DD + KP   RE+++R+ ++ RR   
Sbjct: 55  DVCRAVKGRGDTPVIFLTACDDEGNVVMGLDMGADDYITKPFRIRELISRIKSVLRRCSK 114

Query: 120 KVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +VS     +G IRV  +  R    + E+ PL   E R+L  L+ N G+ +++ Q+   I+
Sbjct: 115 EVSKTVFLSGSIRVNTAQARVTRGEQEI-PLTSVEYRLLLTLIHNAGQVLSRAQLLDGIW 173

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
            +  + V +N +  +I +LR KL +    DP     + + R +GY ++
Sbjct: 174 DVGGDFVNDNTLTVYIKRLRDKLED----DPAHPSIIRTVRGIGYLVE 217


>gi|221133927|ref|ZP_03560232.1| response regulator [Glaciecola sp. HTCC2999]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 6/149 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           +P++ ++    L   ++  D+G DD + KP    E+LAR+  + RRL  V ++  E   +
Sbjct: 73  IPILVLTARGQLSDKINGLDAGADDYLPKPFALEELLARLRVLQRRLGTVMSSTIEISQV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +  D     V   +  L R+E  +L  LM    + V+K Q+ S +Y  +   V  N +E
Sbjct: 133 SLNIDSMLVTVNDTMIQLRRKEFMVLRALMERANRIVSKAQLESMLYE-WGHEVSSNAIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            H+  LRKKL        + + R +GY I
Sbjct: 192 VHVHNLRKKLPEHF----ITNIRGVGYCI 216


>gi|160880001|ref|YP_001558969.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428667|gb|ABX42230.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPL 149
           F +G DD + KP++  E+L R+ A+ RR K+ N ++   G + +  D       GE   L
Sbjct: 92  FLAGTDDYMVKPVNEDEMLLRIKALLRRAKIVNEHKLHIGKVTLDYDALTVSKDGESQTL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P++E  +L  L++   +   + Q+   I+G+  E V +  V  HI++LRK+      FD 
Sbjct: 152 PQKEFYLLYKLLSYPDRIFTRIQLMDEIWGMESETV-DTTVNVHINRLRKRFEGYSEFDI 210

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 211 I-AIRGIGY 218


>gi|119715795|ref|YP_922760.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536456|gb|ABL81073.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 228

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 2/150 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPI 131
           +P++ ++    ++  +D  D+G DD + KP    E+LAR+ A+YRR  +      + G +
Sbjct: 74  LPILMLTARGDVRDRIDGLDAGADDYLPKPFDLDELLARLRALYRRGGLGGEAPVQIGDL 133

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V    R     G    L  RE  IL  L ++ G+ V +  I   ++   +  +  NV++
Sbjct: 134 VVDPGARRVSRGGVEIILSTREFDILYLLASHAGQVVTRLTILDEVWD-GETDLRSNVID 192

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            H++ +R K+    G D + + R +GY +D
Sbjct: 193 VHLAAIRGKIDKPFGTDTITTLRGVGYRLD 222


>gi|302387482|ref|YP_003823304.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198110|gb|ADL05681.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 231

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 13/146 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ ++      + +    SG DD + KP    E++ARV ++ RR    N   
Sbjct: 68  IRQKSSVPILMLTSKNDSTSKIRGLRSGADDYLTKPFDMDELIARVVSLIRRYTRFNTTG 127

Query: 127 ETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
           +         + +  D R    Q   F LP +E  +L +   N+GK + K QI+  ++G 
Sbjct: 128 DHSQPLTYQGLTIDMDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYEEVWGE 187

Query: 180 --LFDEAVEENVVESHISKLRKKLRN 203
             ++D++   N++ + IS+LRKK+ +
Sbjct: 188 SYVYDDS---NIM-AIISRLRKKIES 209


>gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 11/138 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVS------NNRAE---TGPIRVFSDGRDPEVQG 144
           G DD + KP   RE++ARV AI RR K +      +N  E    G + ++SD  +  ++G
Sbjct: 96  GADDYLTKPFSPREVVARVRAILRRTKAAKRSEKDDNEKEKIVIGDVEIYSDNYEVFLKG 155

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-N 203
               L  +E  +L YL  ++G+ + + Q+ +A++  ++   +  +V+ HIS LR+K+  N
Sbjct: 156 NQLELTPKEFELLLYLANHKGRVMTRDQLLNAVWN-YEFVGDTRIVDVHISHLREKIEPN 214

Query: 204 KLGFDPVDSKRFLGYSID 221
                 + + R LGY ++
Sbjct: 215 TKKPIYIKTIRGLGYKLE 232


>gi|197303640|ref|ZP_03168677.1| hypothetical protein RUMLAC_02367 [Ruminococcus lactaris ATCC
           29176]
 gi|197297160|gb|EDY31723.1| hypothetical protein RUMLAC_02367 [Ruminococcus lactaris ATCC
           29176]
          Length = 226

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I IS        +   + G DD + KP     + A+V A+ RR    + + 
Sbjct: 67  IRKVSNVPVIFISSAADNMNIIMAMNMGGDDFIAKPFDLNVLTAKVQAVLRRTYDLSGKV 126

Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G I    D      +GE   L + E +IL+ LM N+G+ V++  + + ++   D
Sbjct: 127 PMLEHRGAILNLYD-TTLTYEGEKVNLTKNEFKILQILMENKGRLVSRDTLMTKLWET-D 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           + +EEN +  +I++LRKKL  K G D  + +K   GY I+
Sbjct: 185 DYIEENTLTVNIARLRKKLE-KAGLDEFITTKVGGGYLIE 223


>gi|170697617|ref|ZP_02888706.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171321223|ref|ZP_02910192.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172061579|ref|YP_001809231.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|170137504|gb|EDT05743.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171093507|gb|EDT38679.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171994096|gb|ACB65015.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 210

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA  Q +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 50  IDVLRTLRARGQSLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 108

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                R+E+    G + +        + G    L  RE  +L+ L+A  G  ++K+Q+  
Sbjct: 109 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLQALLARPGAVLSKSQLEE 166

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 167 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 206


>gi|188579406|ref|YP_001922851.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179342904|gb|ACB78316.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 17/225 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D  ++ DG  A  G  G ++E   +    +   +++      ++  L  G G  V
Sbjct: 3   ILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALAASGFGAVVLDLMLPDGSGLDV 62

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +R    + P++ ++   ++   +   D G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---RGLRERGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELAARIRAVVRR- 118

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++ RA    E   IR+        + GE  P+ RRE  +L  LM       +K ++  
Sbjct: 119 --ASGRAAACLEHAGIRLDPAELAVTLHGEPVPVSRREFMVLTALMERPNVLRSKAELEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E VE N VE H+  LR     K+G   +++ R LGY +
Sbjct: 177 RLYG-WQEEVESNTVEVHVHNLRA----KIGKHAIETVRGLGYRM 216


>gi|71899946|ref|ZP_00682093.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71730309|gb|EAO32393.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 231

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 14/199 (7%)

Query: 33  EFEEWLQSSAREDVSAIEAFL--------IGKGEKVLELPRIIRAHS---QVPLIGISDY 81
           EFE    S ARE  + I   +        +  G   LEL R  R  S   ++P+I ++  
Sbjct: 26  EFESLQASDAREAQAVIADCVPDLILLDWMLPGTSGLELTRRWRKASLTREIPIIMLTAR 85

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141
                 +   ++GVDD + KP   RE+LAR+ A+ RR +           ++  DG    
Sbjct: 86  SEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRRTRDDEEDGSVAIGKLRIDGAAHR 145

Query: 142 V-QGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
           V  G V  P+   E R+L + M +  +  ++TQ+   ++G     +EE  ++ HI +LR+
Sbjct: 146 VYAGHVQVPIGPTEYRLLHFFMTHSERVYSRTQLLDHVWG-SGVYIEERTIDVHIRRLRR 204

Query: 200 KLRNKLGFDPVDSKRFLGY 218
            L      D V + R  GY
Sbjct: 205 TLEPFGLDDMVQTVRSAGY 223


>gi|255320358|ref|ZP_05361542.1| KDP operon transcriptional regulatory protein KdpE [Acinetobacter
           radioresistens SK82]
 gi|262379359|ref|ZP_06072515.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255302553|gb|EET81786.1| KDP operon transcriptional regulatory protein KdpE [Acinetobacter
           radioresistens SK82]
 gi|262298816|gb|EEY86729.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 231

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 47/242 (19%)

Query: 2   FVLIDDR---------ALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA 51
            V+IDD          AL  +GY   LFG    +++G       E+L S + + V     
Sbjct: 10  IVVIDDEPQIRKFLGIALRSEGYQTQLFG---TAMQGL------EYLSSQSAQLVILDLG 60

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
                G+ +L   + +R+ S++P+I +S     Q  +   D+G +D V KP   +E++AR
Sbjct: 61  LPDLDGQDIL---KELRSWSEIPVIVLSVRSDEQEKVTLLDAGANDYVTKPFSVQELMAR 117

Query: 112 VAAIYR-RLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           +  + R RL    N+ ET     G +++    R   +  +   L R+E  +L  L  NRG
Sbjct: 118 IRVVLRSRL----NQTETHDYDDGYLKINFVQRQTYINSQAVALTRKEFHLLSLLARNRG 173

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK----------RF 215
           + + + QI   ++G      +E+    ++  L  KLRNKLG D +  +          RF
Sbjct: 174 QLLTQPQILKELWG---PTHQEDT--HYLRILVAKLRNKLGEDAIHPQYIITEPGVGLRF 228

Query: 216 LG 217
           LG
Sbjct: 229 LG 230


>gi|242238572|ref|YP_002986753.1| DNA-binding transcriptional activator KdpE [Dickeya dadantii
           Ech703]
 gi|242130629|gb|ACS84931.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 226

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 18/160 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I +S     Q  +D  D+G +D + KP    E+LARV    RR   ++ 
Sbjct: 66  RDLRQWSAIPIIVLSARTDEQDKIDALDAGAEDYLTKPFGIGELLARVRVALRR---AST 122

Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ P+ VFSD       R      E   L   E R+L  L+AN GK + + Q+ + ++
Sbjct: 123 APQSSPLIVFSDVTVDLVNRQVSRADEAIHLTPIEFRLLATLLANPGKVLTQRQLLNQVW 182

Query: 179 GLFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216
           G        N VE SH  ++    LR KL  DP   + F+
Sbjct: 183 G-------PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFI 215


>gi|315497608|ref|YP_004086412.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315415620|gb|ADU12261.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 233

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 11/174 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           ++G  + +  L  +  A    P++ +S     +  +D  DSG DD + KP   +E+LARV
Sbjct: 56  MLGNTDGLNVLTTLREAGITTPILVLSALARSENRIDGLDSGADDYLGKPFEPKELLARV 115

Query: 113 AAIYRRLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            A+ RR   S NR  +     G + +    R     G    L  +E  IL+ LM + G  
Sbjct: 116 RALIRR---SQNRMHSAILIYGDLELHVKSRTAHRAGRHLALSPKEFEILKLLMEHAGDV 172

Query: 168 VAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V +  +   ++ L FD   + NV++ ++S+LR +L +      +++ R +G+ +
Sbjct: 173 VTRDMLLQKVWRLNFDP--QTNVIDVNMSRLRNRLEDGFEQPVLETVRGIGFRL 224


>gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
 gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
          Length = 239

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AET--------GPIRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR K+      AE           +++  +  +   Q
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVAEAPDEDSILIADLKILPEFYEAYFQ 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202
           G    L  +E  +L YL  N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEK 214

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233


>gi|94972032|ref|YP_594072.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554083|gb|ABF43998.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 244

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 12/181 (6%)

Query: 27  EGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGISD 80
           +GF  LE  E  Q+ +   + DV+ ++  L   G   LEL R  RAH+   +VPL+ ++ 
Sbjct: 38  DGFRVLEAREGAQALSLLPQADVAVLDWML--PGMTGLELAR--RAHATFPEVPLLMLTA 93

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140
               +  L   + G DD V KP   RE++AR+  + RR+ V     E G + +    R  
Sbjct: 94  RDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRRMGVREV-IEHGELHLDVRARAA 152

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
            ++GE   L + E  +L  L    G    + ++   ++G+ D    E VV+ HI+ LR+K
Sbjct: 153 TLRGEALGLSKLEFDLLFTLAQYPGLAWTRERLLERVWGV-DYPRMERVVDVHITGLRRK 211

Query: 201 L 201
           L
Sbjct: 212 L 212


>gi|90022369|ref|YP_528196.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89951969|gb|ABD81984.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 230

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 6/175 (3%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89
           N  +  +WLQ++   +V  +   L+  G   L++ R IR  S VP+I I+        L 
Sbjct: 38  NGTDANDWLQAN---EVDIVLLDLMLPGMSGLDICRDIRKASDVPVIMITAKVEEIDRLI 94

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVF 147
             + G DD + KP   RE++AR  A+ RR     S++  +   + +  +     V  +  
Sbjct: 95  GLELGADDYICKPYSPREVVARTKAVLRRTLSDTSSSEDQNQSVVLCEERSSVIVHKQEI 154

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            L + E R+ + L    G+  ++  I   IY  +   V +  V+SHI KLRKKL+
Sbjct: 155 ELTQIEYRMFKLLFEQPGRIFSRQFIMDNIYTDY-RVVSDRTVDSHIKKLRKKLQ 208


>gi|17228665|ref|NP_485213.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130516|dbj|BAB73127.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 234

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 14/190 (7%)

Query: 40  SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDV 98
           SSA+  V  ++  L G     LEL + +R     +P++ ++    ++  +   D+G DD 
Sbjct: 43  SSAQYTVVILDWMLPGISG--LELCKRLRYQGNPLPILMLTAKDRMEDKVAGLDAGADDY 100

Query: 99  VNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           + KP    E+LAR+ A+ RR        L V N   + G   V       E Q    PL 
Sbjct: 101 LVKPFGMVELLARLRALQRRSPHLQPQQLTVGNFTLDYGNSTVVRQNTTGEQQS--IPLT 158

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
            +E ++LEY M +  + V   QI + I+ +  E+   NVV + I  LR+KL +    +P+
Sbjct: 159 NKEFQLLEYFMNHPHQIVTTEQIRNQIWEVNAES-SSNVVAAQIRLLRRKLTSNDCPNPI 217

Query: 211 DSKRFLGYSI 220
           ++   +GY +
Sbjct: 218 ETLHGMGYRL 227


>gi|125974109|ref|YP_001038019.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714334|gb|ABN52826.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEK 59
           ++ + DDR+ +++  I     +G    GF+  E F + L++    D+  ++  L   GE 
Sbjct: 2   IYCVEDDRS-IRELIIYALKSNGYEAVGFDKAEPFYKELENKL-PDLVLLDIML--PGED 57

Query: 60  VLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            +E+ + ++A  +   +P+I ++   +    +   DSG DD + KP    E L+RV A+ 
Sbjct: 58  GIEILKKLKASPKLRNIPVIMLTAKSAEYDKVLGLDSGADDYITKPFGIMEFLSRVKAVL 117

Query: 117 RRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR    +N +E   G + ++ D       G+   L  +E  +L+YLM N G  + + ++ 
Sbjct: 118 RRSGNVSNSSEISVGQLTMYIDKHVVIADGKEVALTFKEFELLKYLMENAGIVLTRDKLL 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G ++   E   ++ HI  LR+KL        +++ R +GY I
Sbjct: 178 EEVWG-YEYEGETRTLDVHIRTLRQKLGEAGAI--IETVRGVGYKI 220


>gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20]
          Length = 248

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R H   VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR 
Sbjct: 76  LEVMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S  +     E G +R+  D  +     +   L   E  +L YLM N  + ++K QI  
Sbjct: 136 GASEEKQASLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILD 195

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            ++  +D   + N+VE +IS LR+K+    G +P + + R +GY +
Sbjct: 196 RVWN-YDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVL 238


>gi|307823691|ref|ZP_07653919.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307734985|gb|EFO05834.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 226

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 9/170 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +V E  R+  A    P++ ++   ++Q  +    SG DD + KP    E+LAR+ A+ 
Sbjct: 59  GRQVCE--RLRDAGVGTPILMLTARDTVQDKVTGLRSGADDYMTKPFAFEELLARIEALM 116

Query: 117 RRLKVSNNRAETGPIRV---FSDGRDPEV-QGEVF-PLPRRERRILEYLMANRGKRVAKT 171
           RR +    + ET  ++V     +G   EV +GE    L  +E  +LE  M   GK +++T
Sbjct: 117 RR-RSGEIKLETKELQVADLLLNGETHEVRRGETLIELTPKEFALLECFMRMPGKVLSRT 175

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +I   ++G   + +  NVV+ +I +LR+K+ +      + + R  GY +D
Sbjct: 176 RILEQVWGYSADPL-TNVVDVYIRQLRRKIDDDYELKLLKTVRGFGYKLD 224


>gi|154484426|ref|ZP_02026874.1| hypothetical protein EUBVEN_02139 [Eubacterium ventriosum ATCC
           27560]
 gi|149734903|gb|EDM50820.1| hypothetical protein EUBVEN_02139 [Eubacterium ventriosum ATCC
           27560]
 gi|291551280|emb|CBL27542.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR     P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRILVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD    ++ + +HI  +R K  +   + P+ +   +GY
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216


>gi|134296824|ref|YP_001120559.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139981|gb|ABO55724.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IDVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                R+E+    GP+ +        + G    L  RE  +LE L+   G  ++K+Q+  
Sbjct: 119 --QAGRSESLIRHGPLTLDPASHQVTLDGAPVALSAREFALLEALLVRPGAVLSKSQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216


>gi|17232680|ref|NP_489228.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134327|dbj|BAB76887.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 222

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 13/213 (6%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQ 72
           IA F + G+  +GF +    +   ++     S  +  ++     G+  L++   +R   +
Sbjct: 13  IAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLPGKDGLDVLEELRGQGE 72

Query: 73  -VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
            +P+I ++    +Q  +  F++G DD + KP    E+L RV A  R+   S    ET   
Sbjct: 73  NIPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSGGSQAMEETVIK 132

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G I +    R  ++  +   LP RE  + E    + G+ +++ Q+   ++G +D     
Sbjct: 133 SGNIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDRVWG-YDYDPGS 191

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N+V+ ++  LRKKL N L    +++ R +GY +
Sbjct: 192 NIVDVYVGYLRKKLGNDL----IETVRGMGYRL 220


>gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 19/188 (10%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAH-SQVPLIGIS 79
           LEFE +  + A +   A+E +  G+ + ++           E+ R IR+   Q P++ ++
Sbjct: 22  LEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIMLPGFSGIEILRRIRSKDKQTPILLLT 81

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD 139
              S++  +   D G +D + KP    E+LAR+ A  R                 SD + 
Sbjct: 82  AKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRIKSAGTEEPAVHDCLEVSDLKL 141

Query: 140 PEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
            E   EV        L  RE  +L YLM N+ + + + QI  A++G +D   + NVV+ +
Sbjct: 142 NEKTREVSRGDKAIELTPREFDLLVYLMTNKRQVLNREQILEAVWG-YDFLGDTNVVDVY 200

Query: 194 ISKLRKKL 201
           I  LRKK+
Sbjct: 201 IRYLRKKI 208


>gi|296447705|ref|ZP_06889622.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296254789|gb|EFH01899.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 233

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 10/148 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R IR  S +P++ IS + + ++  D FD G DD + KP+  RE+ AR+A +   ++
Sbjct: 63  LSILRSIRRTSSLPIVMISGWGTAESRADVFDVGADDYLMKPLSVRELQARIARLV-SVR 121

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            S +RA      + G I      R       +  L   E RIL YL  N G+  +K+ I+
Sbjct: 122 ASTSRAAAPAIFQIGKIVCDLQMRRLRRHDRMVGLTDTEGRILGYLHENAGRSCSKSAIY 181

Query: 175 SAIYGLFDEAVE-ENVVESHISKLRKKL 201
              +  F E +  +  ++ +I +LR KL
Sbjct: 182 K--HAFFREYLSGDKTLDVYIGRLRAKL 207


>gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 233

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 10/207 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F  D    +   + + EE L+    E+   I   L+      L
Sbjct: 4   ILVVDDEKPISD--IVKFNLDKEGYDVVTAYDGEEALEKVESEEPDLILLDLMLPKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +RA   +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVARQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121

Query: 119 LKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + SN    N  + GP+ + SD       G    L  RE  +L YL  +  + + +  + 
Sbjct: 122 FQQSNEEVKNNIKIGPLVINSDSYSVTRDGAQLDLTHREFELLHYLAQHTDQVMTREHLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G +D   +   V+  + +LR+K+
Sbjct: 182 QTVWG-YDYFGDVRTVDVTVRRLREKI 207


>gi|254773908|ref|ZP_05215424.1| two component response transcriptional regulatory protein prra
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 15/207 (7%)

Query: 23  GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75
           G+ L GF    +++  E L+S+     +  +A ++     VL+   ++ A     + VP+
Sbjct: 16  GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 72

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131
             +S   S+   +   ++G DD + KP    E++ARV A+ RR    + + +ET   GP+
Sbjct: 73  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+
Sbjct: 133 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I  LR+KL    G   + + R +G+
Sbjct: 192 VFIGYLRRKLEANGGPRLLHTVRGVGF 218


>gi|225174332|ref|ZP_03728331.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170117|gb|EEG78912.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 21/228 (9%)

Query: 1   MFVLIDDRALVK--------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           + V+ DDR L K        +GY  L  +DGV      +LE    L  SA  D+   +  
Sbjct: 4   ILVVEDDRNLQKLMKAVLRQNGYNVLCAEDGVQ-----ALE----LLDSAHVDLIICDIM 54

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +       L    + +A++ +P++ ++   +       F  G DD + KP+   E++ RV
Sbjct: 55  MPNMDGYALT-DTLRKANNNLPVLMVTARETFDDKKKGFLVGTDDYMVKPVDMDEMVLRV 113

Query: 113 AAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           AA+ RR ++ N  R   G + +  D          + LP++E  +L  L++   +   + 
Sbjct: 114 AALLRRSRIINERRLSIGEVELNYDTLTVHRNNNSYILPKKEFYLLFKLLSYPKQIFTRQ 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Q+   I+G+ D   +E  V+ HI +LR+K  +   F+ V + R LGY 
Sbjct: 174 QLMDEIWGM-DAEADERTVDVHIKRLREKFADFPEFEIV-TVRGLGYK 219


>gi|167946589|ref|ZP_02533663.1| transcriptional regulatory protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 145

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVF 134
           I I+    +Q  +   D+G DD + KP    E+ AR+ A+ RR  +  N   E G I++ 
Sbjct: 1   IIITARDQIQDRVCALDNGADDYLVKPFDTDELCARLRAMQRRFYRGVNTIIEHGNIQLD 60

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
                 E+ G    L  RE  +L+ L+ N G+ +++ ++  ++YG +D++++ N VE  I
Sbjct: 61  LSSHRLEINGIPVTLSPREFTLLQVLLENAGRVLSRQRLIESLYG-WDDSIDSNAVEVFI 119

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221
             LRK    K+G   + + R +GY I+
Sbjct: 120 HHLRK----KVGPGLIRTVRGIGYLIE 142


>gi|16125542|ref|NP_420106.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221234288|ref|YP_002516724.1| two-component response regulator protein [Caulobacter crescentus
           NA1000]
 gi|13422630|gb|AAK23274.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220963460|gb|ACL94816.1| two-component response regulator protein [Caulobacter crescentus
           NA1000]
          Length = 242

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 27/229 (11%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEKVLELP 64
           +R L  +GY      DGVS      LE    L +  RE      I   L+      +E+ 
Sbjct: 17  ERGLKAEGYKVRVARDGVS-----GLEAARDLDAMLRELDQRGVILLDLMLPKMTGMEVC 71

Query: 65  RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----- 118
           + +RA   + P++ ++   ++   +    +G DD + KP    E+LAR+ A+ RR     
Sbjct: 72  QTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARIEALLRRSRDQR 131

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 LK  N   +   +RV  D       GE   L  RE  +LE  +++ G+ +++ +
Sbjct: 132 APANRTLKAGNVELDRTTMRVSRD-------GEEVVLTARELALLELFLSSPGRVLSRER 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I S ++G+ DE    NVV+ ++ +LR K+   L    + + R LGY ++
Sbjct: 185 ILSNVWGV-DEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLE 232


>gi|238783827|ref|ZP_04627845.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC
           43970]
 gi|238715214|gb|EEQ07208.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC
           43970]
          Length = 239

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 2/158 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   + + R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 63  LMLPGSDGITICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARV 122

Query: 113 AAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             I RR +    + +E+ P+ +         QG +  L   E R+L+ L    G   ++ 
Sbjct: 123 KTILRRCQQQREQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           Q+ + +Y  +   V +  ++SHI  LR+KL    G  P
Sbjct: 183 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKLEALDGEKP 219


>gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 234

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 11/210 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F       E + + + EE L+  A  +   I   L+      L
Sbjct: 4   ILVVDDEKPISD--IVKFNLTKEGYEVYTAYDGEEALEKVAEIEPDLILLDLMLPKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +  +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 121

Query: 122 SNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S   AE  P        + +  D       GE   L  RE  ++ YL  + G+ + +  +
Sbjct: 122 SAKEAEEAPNAELTIGDLTIHPDAYMVTKNGEAIELTHREFELMHYLAKHLGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              ++G +D   +   V+  + +LR+K+ +
Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIED 210


>gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 241

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 20/189 (10%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP---------RIIRAHSQVPLIG 77
            SL F  +   +A +   A+EA + G+ + V+    LP         R+     + P++ 
Sbjct: 29  TSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVMLPDMDGFTVTRRLRERGVRTPVVF 88

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR----- 132
           ++    +   +     G DD V KP    E++AR+ A+ RR +  +  A++G +R     
Sbjct: 89  LTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRRSQAHD--ADSGVLRYADLE 146

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  D R+    G    L   E ++L YLM N G+ ++KTQI   ++  +D   E  +VES
Sbjct: 147 LDEDAREVRRAGRPVELSPTEFKLLRYLMLNAGRVLSKTQILDHVWE-YDWRGESAIVES 205

Query: 193 HISKLRKKL 201
           +IS LR+K+
Sbjct: 206 YISYLRRKI 214


>gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 232

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           +A    P++ ++    ++  +   D G DD + KP    E++AR+ A+ RR    +    
Sbjct: 73  QAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDGKRDTILT 132

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVE 186
            GP+ + +  R   +      L  +E  ILE+L+ NRG  V++  +   ++G  FD    
Sbjct: 133 AGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWGNEFDPFSM 192

Query: 187 ENVVESHISKLRKKL 201
            N V+ HI  LRKK+
Sbjct: 193 SNFVDVHIKNLRKKI 207


>gi|229012380|ref|ZP_04169557.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228749016|gb|EEL98864.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----- 117
           + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +       
Sbjct: 64  VCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYSS 123

Query: 118 RLKVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + VS     T   I V    R   V GE   +   E  IL Y M N+G  +++ Q+ + 
Sbjct: 124 TINVSTEDTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYFMQNQGIVISREQLITK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           I+G ++ A ++  V SHI  LR KL  K
Sbjct: 184 IWG-YEFAGDDRTVNSHIRNLRHKLGQK 210


>gi|251797216|ref|YP_003011947.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544842|gb|ACT01861.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 221

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRKRNNTPILMMTALSDDENQIKAFDAEADDYVTKPFKIQLLLKRVGALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + +  D       G   PL  +E  IL  L+ N+G+ ++   I S ++G +
Sbjct: 123 LAKEIRCSNLTILPDDFRALYDGVELPLTLKEFEILMLLVQNKGRTLSHEIILSRVWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL   +    + + R +GY ++
Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPENM----IKTARGVGYRLE 217


>gi|26988153|ref|NP_743578.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24982886|gb|AAN67042.1|AE016333_3 transcriptional regulatory protein TctD [Pseudomonas putida KT2440]
 gi|313500352|gb|ADR61718.1| TctD [Pseudomonas putida BIRD-1]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPI 131
           +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  +   R +  GP+
Sbjct: 73  LPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLGGERQQRCGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
               D R   +  +   L  RE+ +LE L+A  G+ ++K Q+ + ++GL DE    + +E
Sbjct: 133 VYDLDTRRFTLGDDNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFGL-DEEASPDAIE 191

Query: 192 SHISKLRKKL 201
            +I +LRKKL
Sbjct: 192 IYIHRLRKKL 201


>gi|333031401|ref|ZP_08459462.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332741998|gb|EGJ72480.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 228

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETG 129
           +++P+I ++   S    L  F  G DD ++KP   +E++ARV AI +R K+   N + T 
Sbjct: 72  NEIPIIFLTAKRSENDMLTGFSVGADDYISKPFSIKEVIARVKAILKRAKLKKQNESPTS 131

Query: 130 ----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                + +  + ++  +  E+ PL + E  IL  L +N  +  ++  I   ++      +
Sbjct: 132 IDFEGLSINLESKEVIIDEEMIPLTKTEFEILALLTSNPSRLFSREDIIGVVWSE-TPYI 190

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            E  V+ HI++LRKK+++   F  + S+   GY  + N
Sbjct: 191 TERTVDVHITRLRKKMKDYGQF--ITSRSGYGYRFNVN 226


>gi|323705241|ref|ZP_08116816.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535143|gb|EGB24919.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 25/203 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L K+GY  L   +G +    N+ +       +   D+  ++  L G  GE   E+ R IR
Sbjct: 20  LEKEGYTVLTETNGAN--ALNTFK-------TVNPDLVILDLMLPGMSGE---EICRKIR 67

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A S+VP++ ++   S    +  F  G DD + KP   RE+  RV AI RR K   N    
Sbjct: 68  ALSKVPILMLTAKVSEDDKVYGFTIGADDYLTKPFSPRELTMRVKAILRRTK---NDLPL 124

Query: 129 GPIRVFSDG------RDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             I +F+DG      R  EV  +G +  L   E ++L  ++ N  K   ++++    +G 
Sbjct: 125 NDIFMFNDGDLVIDTRSYEVKKKGRIVNLTPNEYKLLTVMVQNPNKVFTRSELIEKAFG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
           +D    +  +++HI  LR+K+ +
Sbjct: 184 YDFDGFDRTIDAHIKNLRQKIED 206


>gi|169628053|ref|YP_001701702.1| transcriptional regulatory protein PrrA [Mycobacterium abscessus
           ATCC 19977]
 gi|169240020|emb|CAM61048.1| Probable transcriptional regulatory protein PrrA [Mycobacterium
           abscessus]
          Length = 233

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 5/135 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET- 128
           + VP+  +S   S+   +   ++G DD + KP    E++ARV A+ RR   V+ +  ET 
Sbjct: 78  NDVPVCVLSARTSVDDRVAGLEAGADDYLTKPFVLAELVARVKALLRRRGAVATSSTETI 137

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             GP+ V   GR   + G    L +RE  +L  L  ++   +++ Q+   ++G +D A +
Sbjct: 138 TVGPLEVEIPGRRARINGVEVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAAD 196

Query: 187 ENVVESHISKLRKKL 201
            NVV+  I  LR+KL
Sbjct: 197 TNVVDVFIGYLRRKL 211


>gi|149926997|ref|ZP_01915255.1| two component transcriptional regulator, winged helix family
           protein [Limnobacter sp. MED105]
 gi|149824218|gb|EDM83438.1| two component transcriptional regulator, winged helix family
           protein [Limnobacter sp. MED105]
          Length = 236

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA  + +P++ ++   S++  +   D+G DD + KP   +E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARGNNMPVLILTAADSVEQRVQGLDAGADDYMAKPFDLKELEARVRALARRG 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q    + 
Sbjct: 120 TGGGASIWKHGPLTFDQVGRIAYINDDMLDLSAREVGLLEVLLQRVGRLVSKEQFVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+  ++    + + R LGY ++
Sbjct: 180 E-WGEEVSNNAIEVYIHRLRKKI--EVNGVRIATVRGLGYCLE 219


>gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 230

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 3/158 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+  A    P++ ++     +  +     G DD V KP    EI+AR+ AI RR   ++ 
Sbjct: 69  RLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTMHADE 128

Query: 125 RA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            A    G + +  D  +  V  E   L   E ++L YLM N  + ++K QI   ++  +D
Sbjct: 129 DAIIRAGELTMDQDTHEVLVGEEPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE-YD 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +  +VES+IS LR+KL        + +KR  GY +
Sbjct: 188 FNGDAGIVESYISYLRRKLDQHSSEPVIQTKRGFGYML 225


>gi|89896308|ref|YP_519795.1| hypothetical protein DSY3562 [Desulfitobacterium hafniense Y51]
 gi|89335756|dbj|BAE85351.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R   + P+I ++    L+  +   D G DD + KP H  E+LAR+ A+ RR    
Sbjct: 63  LKEVRRNRIETPVILLTARGQLEDKVRGLDLGADDYLAKPFHTDELLARLRALGRRPPAL 122

Query: 123 NNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N        +++       +  G+   L  +E ++LE L+ ++   V+K  I   I+G 
Sbjct: 123 LNEGALSFADLQLLPHALMLKSNGQEIKLTLKEAQLLELLINHKNIIVSKDAIIEKIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D    +N VE+HIS LRKKL        + + R  GY++
Sbjct: 182 HDTDAADNHVEAHISLLRKKLSEIHSGSMIRTIRGAGYTL 221


>gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 239

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR K+               +   +++  +  +   Q
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVSESPDEESIKIAELKILPEFYEAYFQ 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202
           G    L  +E  +L YL  N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233


>gi|315644225|ref|ZP_07897395.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280600|gb|EFU43889.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 243

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 28/216 (12%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGK-----------GEKVLELPRIIRAHS-QVPLI 76
           FN LE E +    A + +SA+E  L  +           G+  +++ R +RA + Q+P+I
Sbjct: 20  FN-LEKEGYDVICAFDGISAVEIALTKRPDLMLLDLMLPGKDGMDVCREVRAANLQIPII 78

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TG------ 129
            ++        +   + G DD V KP   REILARV A  RR +  +N A+ TG      
Sbjct: 79  MLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAQMRRQQKPDNSADNTGGTSAGG 138

Query: 130 -PIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             +R+F    D ++      GE   L  RE  ++ YL  N GK + +  +  A++G F+ 
Sbjct: 139 QGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKVMTREHLLQAVWG-FEY 197

Query: 184 AVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
             +   V+  I +LR+K+  N    + + ++R LGY
Sbjct: 198 FGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGY 233


>gi|290352129|dbj|BAI78775.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +  PL +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|168185490|ref|ZP_02620125.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
           botulinum C str. Eklund]
 gi|169296516|gb|EDS78649.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
           botulinum C str. Eklund]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R IR     P+I ++     Q  +     G DD ++KP    E+ ARVAA  RR  + 
Sbjct: 62  LCRQIRNLVDCPIIFLTAKTMEQDIVMGLSLGGDDYISKPFGISELRARVAAHLRREHRE 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N      ++     ++     ++ P  + E  I E L  N G+  +K +I+  ++G++
Sbjct: 122 KQNAFCVSDVKFNITSKEAYYNEKLVPFTKSEYSICECLAINHGQVFSKERIYEKVFGVY 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             +    +VE HI  +R KL++ +G +P+++   +GY
Sbjct: 182 GNSDTTAIVE-HIKNIRSKLKS-IGINPIETVWGIGY 216


>gi|83644483|ref|YP_432918.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632526|gb|ABC28493.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE++L   R  +     P++ ++    +   +   D+G DD + KP    E+ AR   + 
Sbjct: 59  GEQILSELR--KRKDTTPVLILTAREQVDDRIKLLDAGADDYLTKPFDFGELEARCRVLM 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR +  S+N +  G +      +   V  E   L  RE R+LE  + N G+ ++K ++  
Sbjct: 117 RRNQGFSSNLSRHGNLSFDRSAKAVYVNDEKLDLKNREFRLLEVFLGNLGRVMSKEELAD 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++  FDE+   N +E +I++LRKKL
Sbjct: 177 RLFA-FDESPGPNAIELYIARLRKKL 201


>gi|26249595|ref|NP_755635.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           CFT073]
 gi|227887735|ref|ZP_04005540.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972]
 gi|300973288|ref|ZP_07172127.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301048153|ref|ZP_07195190.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|26110003|gb|AAN82208.1|AE016766_296 Transcriptional Regulatory protein qseB [Escherichia coli CFT073]
 gi|227835131|gb|EEJ45597.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972]
 gi|300299989|gb|EFJ56374.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300410868|gb|EFJ94406.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|307555121|gb|ADN47896.1| transcriptional regulatory protein QseB [Escherichia coli ABU
           83972]
 gi|315295065|gb|EFU54402.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGK 56
            +LI+D  L+ DG        G+S  GF    F +  Q      SA  D   ++  L G 
Sbjct: 3   ILLIEDDMLIGDGI-----KTGLSKMGFRVDWFTQGRQGKEALYSAPYDAVILDLTLPGM 57

Query: 57  -GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
            G  +L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A
Sbjct: 58  DGRDIL---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEA 114

Query: 115 IYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR    ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I
Sbjct: 115 LMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +Y  +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 175 EEKLY-TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|322514296|ref|ZP_08067353.1| two component response regulator [Actinobacillus ureae ATCC 25976]
 gi|322119815|gb|EFX91839.1| two component response regulator [Actinobacillus ureae ATCC 25976]
          Length = 221

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLKV 121
           L R  + H  +P++ ++   +L   +  F+SG DD + KP    E++ R+ A+  RR + 
Sbjct: 63  LKRWRKEHQDIPVLILTARDTLDDRILGFNSGADDYLCKPFALMEVVVRLQALVRRRYQQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S++    G +R+ ++     +      L  +E ++L+  ++N+ K + ++ I   +Y  +
Sbjct: 123 SSSEIVIGSLRIDNNTHSATLADNPIILTSKEFQLLQLFVSNKDKVLTRSSIEEKLYS-W 181

Query: 182 DEAVEENVVESHISKLRKKL 201
           D  V  N +E +I  LRKKL
Sbjct: 182 DNDVGSNTLEVYIHNLRKKL 201


>gi|320194319|gb|EFW68950.1| Putative two-component system response regulator YedW [Escherichia
           coli WV_060327]
          Length = 260

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +++ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHTLNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 9/145 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA  + +P++ ++       T+   D+G DD V KP    E+LARV A+ RR 
Sbjct: 60  LEVCRRLRAEGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR- 118

Query: 120 KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   TG  +R+ SDGR    +GE   L  +E  +L  L+  +GK V + Q+   ++
Sbjct: 119 -TPTDVGPTGELVRIDSDGRRAWFKGEELQLTAKEFDVLRVLIREQGKVVPREQLMREVW 177

Query: 179 GLFDEAV--EENVVESHISKLRKKL 201
              D A       ++ HIS LR+KL
Sbjct: 178 ---DTAWFGSTKTLDMHISVLRRKL 199


>gi|291461067|ref|ZP_06026728.2| DNA-binding response regulator ArlR [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379171|gb|EFE86689.1| DNA-binding response regulator ArlR [Fusobacterium periodonticum
           ATCC 33693]
          Length = 233

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 22/194 (11%)

Query: 14  GYI---ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           GYI   A  G++G+ L   NS             DV  ++  L  K  K  EL +  R  
Sbjct: 34  GYIVSSAYDGEEGLELFTKNSY------------DVVLLDLMLPKKSGK--ELCQEFRKL 79

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +  P+I  +   ++   ++  D G +D + KP    E+LAR+  + R  + S+++     
Sbjct: 80  TDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNRETSSDKQIYFE 139

Query: 131 IRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
             +  D    +V   Q E+  L + E  ILEY M NR    ++ +I + ++G +D   EE
Sbjct: 140 NEIKLDLTTKKVFINQKEI-SLTKTEFLILEYFMKNRAISCSREKILTGVWG-YDFDGEE 197

Query: 188 NVVESHISKLRKKL 201
            +V+ +I+ LRKK+
Sbjct: 198 KIVDVYINSLRKKM 211


>gi|182680313|ref|YP_001834459.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636196|gb|ACB96970.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 252

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 27/212 (12%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQ---VPLIGISD 80
           EGF     E   ++ AR D S  +  L+     G   LE+ R IRA  +   +P+I ++ 
Sbjct: 46  EGFEVESLECGDEAEARLDESLPDLVLLDWMLPGVSGLEICRRIRAREKTRALPIIMLTA 105

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS--DGR 138
                  +    +G DD + KP    E++ARV A+ RR +         P R+       
Sbjct: 106 RGEESEKIRGLATGADDYIVKPFSVPELMARVRALLRRSR---------PDRITGLLTAG 156

Query: 139 DPEVQGEVFPLPRRER---------RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           D  +  E + + R ER         R+L++LM   G+  ++ Q+   ++G   E ++E  
Sbjct: 157 DLSLDRENWRVHRGERHVHLGPTEFRLLDHLMGRPGRVFSRAQLLDGVWGEAAE-IDERT 215

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           V+ H+ +LRK L      DP+ + R  GYS D
Sbjct: 216 VDVHVGRLRKALSIGEEQDPIRTVRGAGYSFD 247


>gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
 gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
          Length = 232

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 2/148 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GP 130
           Q P++ ++     Q  ++  ++G DD V KP    E+ AR+ A+ RR   S   + + GP
Sbjct: 72  QFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRRSAGSCKPSMSFGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + +  +   +      L   E   LEYL  N GK V+KT++   +Y   D   + NV+
Sbjct: 132 LTINTTSKVALIGNTEMTLTSYEYNTLEYLAHNAGKVVSKTELTEHLYSQ-DFERDSNVI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E  I +LRKK+        + + R  GY
Sbjct: 191 EVFIGRLRKKIDPDNQLKAIVTVRGQGY 218


>gi|21693597|gb|AAM75361.1|AF521648_1 PhoB [Pseudomonas syringae]
          Length = 230

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 104/213 (48%), Gaps = 23/213 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G++ LE +    + A     + D+  ++  L G 
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYDCLEADNAQDAHAIIVDRKPDLILLDWMLPG- 59

Query: 57  GEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++     S +P+I ++        +   + GVDD + KP   RE++AR+ 
Sbjct: 60  GTSGIELARRLKREELTSDIPIIMLTAKGEEDNKIQGLEVGVDDYITKPFSPRELVARLK 119

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   +++ +   PI +     DP      + G    +   E R+L++ M ++ +  
Sbjct: 120 AVLRRAGPADSES---PIEIGGLLLDPISHRVTIDGTPAEMGPTEYRLLQFFMTHQERAY 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 177 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 208


>gi|28199836|ref|NP_780150.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71275218|ref|ZP_00651505.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71899561|ref|ZP_00681717.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|170731213|ref|YP_001776646.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182682586|ref|YP_001830746.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|28057957|gb|AAO29799.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71164027|gb|EAO13742.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71730690|gb|EAO32765.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|167966006|gb|ACA13016.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182632696|gb|ACB93472.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307578868|gb|ADN62837.1| two component transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 231

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 14/199 (7%)

Query: 33  EFEEWLQSSAREDVSAIEAFL--------IGKGEKVLELPRIIRAHS---QVPLIGISDY 81
           EFE    S ARE  + I   +        +  G   LEL R  R  S   ++P+I ++  
Sbjct: 26  EFESLQASDAREAQAVIADCVPDLILLDWMLPGTSGLELTRRWRKASLTREIPIIMLTAR 85

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141
                 +   ++GVDD + KP   RE+LAR+ A+ RR +           ++  DG    
Sbjct: 86  SEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRRTRDDEEDGSVAIGKLRIDGAAHR 145

Query: 142 V-QGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
           V  G V  P+   E R+L + M +  +  ++TQ+   ++G     +EE  ++ HI +LR+
Sbjct: 146 VYAGHVQVPIGPTEYRLLHFFMTHSERVYSRTQLLDHVWG-SGVYIEERTIDVHIRRLRR 204

Query: 200 KLRNKLGFDPVDSKRFLGY 218
            L      D V + R  GY
Sbjct: 205 TLEPFGLDDMVQTVRSAGY 223


>gi|317057288|ref|YP_004105755.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449557|gb|ADU23121.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 6/150 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  +  P++ +S        L+ F  G DD + KP     ++A++  I++R    +  +
Sbjct: 67  LREQADTPILIVSCRTDKDDKLNGFGLGADDYIEKPYDIDILIAKIKGIFKRRYQLDTIS 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G     +D R  E+ GE   L  +E  +L  L+ N+ K + K  +F+ ++G  D   E
Sbjct: 127 ADGVKLNLAD-RTAEIDGEAVELTVKEFDLLTLLVQNKDKVLKKEYLFNNVWG-SDSDSE 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
              +  HI++LR+    KLG DP  +KR L
Sbjct: 185 MQTLHVHINRLRQ----KLGDDPKSAKRLL 210


>gi|303229816|ref|ZP_07316596.1| putative response regulator ArlR [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303231718|ref|ZP_07318441.1| putative response regulator ArlR [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513667|gb|EFL55686.1| putative response regulator ArlR [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515576|gb|EFL57538.1| putative response regulator ArlR [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 2/149 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129
           +  P++ ++   SLQ  +   ++G DD + KP    E+ AR+ A+ RR  + + N  + G
Sbjct: 71  NTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNARHAQNDIKVG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P+ +    R  +  GE   L  +E  +L YL +N    +++ QI   ++  +D     N+
Sbjct: 131 PLTINVPQRTVKRDGEAITLTAKEFDLLYYLASNENIVLSRQQILDHVWE-YDYESYSNL 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ +I  LRKK+        + + R +GY
Sbjct: 190 IDVYIKDLRKKIDTDENVKLIQTVRGVGY 218


>gi|255065068|ref|ZP_05316923.1| QseB protein [Neisseria sicca ATCC 29256]
 gi|255050489|gb|EET45953.1| QseB protein [Neisseria sicca ATCC 29256]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L +I    SQ P++ ++    L + L+  D G DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LTQIRHEGSQTPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRRHSGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S      G + +       EV+GE  P  L  +E  +L+ LM   G  ++++ +   IYG
Sbjct: 123 SQTLLTNGALTLNPATYQVEVKGENKPVLLSNKEFAVLQALMMRPGIILSRSDLEDKIYG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E VE N V+  I  LRK    KLG + + + R +G+ +
Sbjct: 183 -WGEEVESNAVDFLIHALRK----KLGKEHIQNVRGVGWLV 218


>gi|239994087|ref|ZP_04714611.1| transcriptional regulator [Alteromonas macleodii ATCC 27126]
          Length = 229

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 15/171 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +L+  R  R  ++V ++     P  +  ++   +G DD ++KP    E+ AR+ ++ 
Sbjct: 59  GMAILKTLRKRRVETKVLILSARAEP--EEKVEGLLAGADDYLSKPFSFEELSARLLSLM 116

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVA 169
           RR  V+N   +    ++  +G   ++Q + F        L   E RI+E +  N+GK V 
Sbjct: 117 RR-GVTNCIND----QITINGLILDIQAKSFLFGEQAISLTPNEYRIVECMFLNKGKVVT 171

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++   I G +D  + +N +E+H+S  RKK+R      P+ SKR  GY +
Sbjct: 172 SEKLSEFISGSYD-YISKNAIEAHLSSARKKVRACGATLPIKSKRGFGYVV 221


>gi|261856844|ref|YP_003264127.1| PhoB family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261837313|gb|ACX97080.1| two component transcriptional regulator PhoB, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 230

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 17/157 (10%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP++ ++     +  +   ++G DD + KP   RE++AR+ A+ RR   ++  +E G I 
Sbjct: 78  VPIVMLTARGEEEDKVSGLEAGADDYITKPFSPRELMARIKAVLRR---ASPDSEGGVIE 134

Query: 133 VFSDGRDPE--------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           V     DPE        V  EV P    E R+L + M +  +  ++TQ+   I+G  +  
Sbjct: 135 VAGLRLDPESHRVTGGSVDIEVGPT---EFRLLTFFMTHPERVFSRTQLLDRIWGR-NAY 190

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           VEE  V+ HI +LRK L    GFD  + + R +GY +
Sbjct: 191 VEERTVDVHILRLRKALVPS-GFDALIQTVRGVGYRL 226


>gi|115523977|ref|YP_780888.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517924|gb|ABJ05908.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 18/185 (9%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           D +  +A ++  G  VL+   ++R    A   +P++ ++   S +  +     G DD + 
Sbjct: 41  DSAIYDAVILDLGLPVLDGLAVLRRWRAAKRSMPVLILTARGSWREKVMGLREGADDYLT 100

Query: 101 KPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERR 155
           KP    E+LAR+ A+ RR   ++  A +  I V     DP  Q      EV  L   E R
Sbjct: 101 KPFEMEELLARIEALIRR---ASGHASS-VIDVAGLRLDPAAQRIVRNDEVLDLTSLEYR 156

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
            L Y M +  K V+KT++   IYG  D+  + NV+E  +++LRK    K+G + + ++R 
Sbjct: 157 ALSYFMMHPAKVVSKTELTEHIYGQDDDR-DSNVIEVLVNRLRK----KIGAELIRTRRG 211

Query: 216 LGYSI 220
            GY +
Sbjct: 212 QGYEL 216


>gi|89074320|ref|ZP_01160802.1| transcriptional regulator [Photobacterium sp. SKA34]
 gi|89049807|gb|EAR55348.1| transcriptional regulator [Photobacterium sp. SKA34]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 27/151 (17%)

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG 144
           Q  +D    G DD V KP    E+ ARV AI RR +         P+ +       E++G
Sbjct: 85  QDRIDGLMQGADDYVTKPFSFDELHARVVAISRRCQ---------PVSI---ANTIEIEG 132

Query: 145 EVFPLPRR--------------ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
            +  L  +              E +I++YL  +RG+ +  + I   I   FD  + +N +
Sbjct: 133 FLLDLNNKTLFYGNYDLDLTPNEFKIIDYLFNHRGQILTASMISDNITNNFD-YISKNTI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E HIS +RKK +N     P+ +KR  GY ++
Sbjct: 192 EVHISSMRKKSKNIEAVLPIKNKRGFGYYVE 222


>gi|256027680|ref|ZP_05441514.1| two-component response regulator [Fusobacterium sp. D11]
          Length = 201

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 3/142 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +  R  +  P+I I+   S+   ++  D G +D + KP    E+LAR+    R  + 
Sbjct: 39  ELCQEFRKLNNTPIIIITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 98

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S ++       I++    +   +Q E   L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 99  SVDKQFYLEKDIKLDLSAKRVYLQEEEVNLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 158

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +D   EE +V+ +I+ LRKK+
Sbjct: 159 -YDFDGEEKIVDVYINSLRKKI 179


>gi|218709844|ref|YP_002417465.1| DNA-binding response regulator [Vibrio splendidus LGP32]
 gi|218322863|emb|CAV19040.1| DNA-binding response regulator [Vibrio splendidus LGP32]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 12/153 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P+I +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S + A    I 
Sbjct: 73  TPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGSAAPILQIG 130

Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
             S D R  +V  QG+   L   E +++ Y M N+ K +++T++   IY   FD   + N
Sbjct: 131 DLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEHIYKQDFDR--DSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE  I ++RKK+  K+    + + R LGY ++
Sbjct: 189 TVEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|209519930|ref|ZP_03268711.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209499632|gb|EDZ99706.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 221

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  LE+   IRA    +PL+ I+    L   L   D G DD V KP    E+LAR+ A+
Sbjct: 56  GKDGLEVLVRIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVLKPFQMAELLARIRAV 115

Query: 116 YRRLKVSNNRA-ETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR   S   A   G + +    ++  V  G    L  RE  +L+ L+   G  ++++++
Sbjct: 116 LRRKGGSAAPALSNGVLSLDPATKEASVSGGSPLQLSNREFSLLQALLVRPGAILSRSEL 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              IYG + E VE N VE  I  LR+    KLG + + + R +G+ +
Sbjct: 176 EDRIYG-WGEEVESNAVEYLIHALRR----KLGSEVIKNVRGVGWMV 217


>gi|169795463|ref|YP_001713256.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AYE]
 gi|260549449|ref|ZP_05823668.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624]
 gi|332855218|ref|ZP_08435769.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
 gi|169148390|emb|CAM86255.1| putative Two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AYE]
 gi|260407558|gb|EEX01032.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624]
 gi|332727595|gb|EGJ59017.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
          Length = 228

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
           +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + +  
Sbjct: 69  QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 128

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ + FD
Sbjct: 129 NELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNINFD 188

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
              + N ++  + +LR K+    G++P  + + R LGY I
Sbjct: 189 --TDTNFIDVAVRRLRSKIDE--GYEPKLIHTIRGLGYKI 224


>gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 231

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 21/201 (10%)

Query: 24  VSLEGFN---SLEFEEWLQSSAREDVSAIEA-FLIGKGEKVLELPRIIRAHSQVPLIGIS 79
           ++LEGF    + + EE LQ  A +  + +    ++ K      L R+ + H   P++ ++
Sbjct: 21  LTLEGFQVTVAEDGEEGLQLLAEQHFNLVLLDVMMPKLNGFAMLARLRKTHD-TPVLMLT 79

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AETGPIRVFSDG 137
                Q  ++  ++G DD + KP   RE+LARV AI RR + +  +    +  +R     
Sbjct: 80  ARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQSTQPQRGGSSEEVRFMDLV 139

Query: 138 RDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL----FDEAVEEN 188
             P +Q     GE+  L   E  +LE L+ N G+ V+K+Q+   + G     FD A    
Sbjct: 140 LQPGLQQASCHGELLELTATEFGLLECLLRNPGQIVSKSQLSELVLGKKLEPFDRA---- 195

Query: 189 VVESHISKLRKKLRNKLGFDP 209
            ++ H+S LRKKL  +    P
Sbjct: 196 -IDMHLSNLRKKLPERTDGQP 215


>gi|20807256|ref|NP_622427.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20515763|gb|AAM24031.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S+VP++ I+        L  F+ G DD V KP   RE++ARV AI  R   S
Sbjct: 65  LLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYGS 124

Query: 123 NNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +T    +  D   R+  V G+   L  +E  +L+ L+ N+GK V++ +  + ++G 
Sbjct: 125 QDDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D   +   V++HI +LR+KL  K
Sbjct: 184 YDFYGDLRTVDTHIKQLREKLGEK 207


>gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 229

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 17/187 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIG-----------KGEKVLELPRIIRAHSQVPLIGIS 79
           SLE E +  ++A +   A+  F  G            G   L + R +RA    P+I ++
Sbjct: 20  SLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLTICREVRAAGMTPIIMLT 79

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-----NRAETGPIRVF 134
                   +   + G DD + KP + RE++AR+ A+ RR + ++      R   G + + 
Sbjct: 80  AKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEAASRQDRAGRLVVGDLVLH 139

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
              R  EV G    L  RE  +LE L  + G    + ++   ++G +D A +E  V+ H+
Sbjct: 140 PRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDLVWG-YDFAGDERTVDVHV 198

Query: 195 SKLRKKL 201
            ++R+KL
Sbjct: 199 RRIREKL 205


>gi|254237307|ref|ZP_04930630.1| two-component response regulator CreB [Pseudomonas aeruginosa
           C3719]
 gi|126169238|gb|EAZ54749.1| two-component response regulator CreB [Pseudomonas aeruginosa
           C3719]
          Length = 229

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+       
Sbjct: 67  LRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAPRPAAL 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              A +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+ G+  
Sbjct: 127 EGAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL-GVAS 185

Query: 183 EAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYS 219
           EA  E  ++SHI  LR KLR  N+ G + + + R LGYS
Sbjct: 186 EAGYERNIDSHIKSLRAKLRQVNERG-EAIQTHRGLGYS 223


>gi|301067694|ref|YP_003789717.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|300440101|gb|ADK19867.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 233

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  SQVP+I ++    +   +     G DD + KP    E++ARV    R     +N
Sbjct: 68  RKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALR-----HN 122

Query: 125 RAETGPIRVFS------DGRDPEVQ-GEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    P  +F       D  +  VQ GEV  PL +RE  +L  L+A++ +  ++  +  A
Sbjct: 123 RQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDA 182

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
           ++G  FD   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 183 VWGTDFDG--QPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|302875608|ref|YP_003844241.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690139|ref|ZP_07632585.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578465|gb|ADL52477.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 222

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 99/198 (50%), Gaps = 29/198 (14%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRI--------IRAHSQ 72
           +S EGF  +E        A + VSAIE F     + +   L LP++        IR  S 
Sbjct: 21  LSKEGFEIIE--------AVDGVSAIEKFKNNNIDLIVLDLMLPKLNGITVCSKIREISD 72

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           V +I ++     +  L  +++G DD + KP   + ++A++ A+ +R+K   +  E G ++
Sbjct: 73  VHIIMLTAKSQEEDKLIGYETGADDYITKPFSPKVLVAKIKAVLKRIK--EDEKEDGVLQ 130

Query: 133 VFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            F D       R+  + GE   L  +E  ++ YL  N+G  +++  I   ++G FD   +
Sbjct: 131 -FDDLIINELSREVILSGETLDLTPKEIDLILYLAKNKGIALSREHILEKVWG-FDYEGD 188

Query: 187 ENVVESHISKLRKKLRNK 204
              V++++ +LR+KL++K
Sbjct: 189 IRTVDTNVKRLRQKLKDK 206


>gi|237744204|ref|ZP_04574685.1| two-component response regulator [Fusobacterium sp. 7_1]
 gi|229431433|gb|EEO41645.1| two-component response regulator [Fusobacterium sp. 7_1]
          Length = 227

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 5/159 (3%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           DV  ++  L  K  K  EL +  R  +  P+I I+   S+   ++  D G +D + KP  
Sbjct: 50  DVILLDLMLPKKSGK--ELCQEFRKLNNTPIIIITAKDSILDKVELLDLGANDYICKPFA 107

Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
             E+LAR+    R  + S ++       I++    +   +Q E   L + E  ILEY M 
Sbjct: 108 MEELLARIRVATRNKENSVDKQFYLEKDIKLDLSAKRVYLQEEEVNLTKTEFLILEYFMK 167

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           N+G   ++ +I   ++G +D   EE +V+ +I+ LRKK+
Sbjct: 168 NKGLSCSREKIIIGVWG-YDFDGEEKIVDVYINSLRKKI 205


>gi|121607358|ref|YP_995165.1| two component transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121551998|gb|ABM56147.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 226

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +R     +P++ ++   S+   +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  LEVLKKLRGRGMALPVLILTAADSVDERVKGLDLGADDYMAKPFSLQELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +++    GP+     GR   + G++  L  RE  +L  L+   G+ V+K Q+   + 
Sbjct: 121 MGGTSSAIRHGPLVYDQAGRVATIDGKMIELSARELGLLGVLLQRVGRLVSKEQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 E-WSEEVSNNAIEVYIHRLRKKIEG--GPIRIATVRGLGYCLE 220


>gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
 gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
          Length = 240

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 28/232 (12%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE--GFNSLEFEEWLQSSA-----REDVSAIEAFLI 54
            +++DD A ++D          ++LE  GFN L+ +   Q+ A     + D+  ++  + 
Sbjct: 13  ILIVDDEAAIRDML-------SIALEAAGFNVLQADNAQQAHASIIDNQPDLVLLDWMM- 64

Query: 55  GKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
             G   LEL R ++     ++ P+I ++      + +   DSG DD + KP   RE+++R
Sbjct: 65  -PGTTGLELLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISR 123

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGK 166
           V A+ RR+      A   PI +     DP      + GE   L   E R+L++ + ++ +
Sbjct: 124 VNAVLRRI---GREALKEPISIGELIFDPLGHRVSIAGEPINLGPTEYRLLQFFLTHQER 180

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++ QI   ++G  +  ++E  V+ HI +LRK +      + V + R  GY
Sbjct: 181 VYSRGQILDYVWG-GNVYLDERTVDVHIRRLRKAISVAGHENYVQTVRGAGY 231


>gi|296135166|ref|YP_003642408.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295795288|gb|ADG30078.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 258

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 70/138 (50%), Gaps = 20/138 (14%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---DPEVQ---- 143
            D+G DD V KP    E+ AR+ A+ RR   +  RAE     VFS GR   +P       
Sbjct: 91  LDAGADDYVLKPYDLDELSARIRALLRR---AAGRAEP----VFSYGRISLNPATHEALL 143

Query: 144 -GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            GE   L +RE  +LE L+A  G  +++ Q+   +Y   DE +  N VE ++  LRK   
Sbjct: 144 DGEPVALSQREWAVLEALIARPGMILSRAQLEEKLYSWKDE-ISSNAVEVYVHSLRK--- 199

Query: 203 NKLGFDPVDSKRFLGYSI 220
            KLG D + + R +GY I
Sbjct: 200 -KLGPDLIRNIRGMGYMI 216


>gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 36/227 (15%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L  +GY     D+GV +LE + S E           D+  ++  L   G   +EL R IR
Sbjct: 22  LESEGYQVTKADNGVDALEAYRSQEV----------DLILLDVML--PGMSGIELLRRIR 69

Query: 69  AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------- 118
           AH S   ++ ++   S++  +   D G +D + KP    E+LAR+ A  R          
Sbjct: 70  AHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQGKPHPEEE 129

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L  ++ +   G   V  DGR          L  RE  +L YL+ N+ + + + QI
Sbjct: 130 PAGEWLTAADLKLNEGTREVIRDGRR-------IDLTPREFDLLVYLLKNKRQVLNREQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +A++G +D   + NVV+ +I  +RKK+      + + + R +GY +
Sbjct: 183 LAAVWG-YDYYGDTNVVDVYIRYVRKKIDYGGTQELIHTVRGVGYVL 228


>gi|170759409|ref|YP_001787536.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406398|gb|ACA54809.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP+I ++   S    L   + G DD V KP +   +LAR+  I +R    
Sbjct: 63  ICREIRKTSDVPIIIVTSRDSEVDELISMNLGADDFVTKPYNTEILLARITNILKRTYGN 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           LK +NN        +         + +   L + E +IL YL+ NRG  V +  +   ++
Sbjct: 123 LK-TNNTLNYKDFNLNLSNATIIYKDKSLELTKNEVKILSYLINNRGNIVKRDSLMEYLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              D  V+++ +  +I++LRKKL+ ++G  +P++++R LGY
Sbjct: 182 K-SDYFVDDSTLTVNINRLRKKLQ-EIGIENPIETRRGLGY 220


>gi|85059060|ref|YP_454762.1| DNA-binding transcriptional regulator PhoP [Sodalis glossinidius
           str. 'morsitans']
 gi|84779580|dbj|BAE74357.1| two-component response regulator protein [Sodalis glossinidius str.
           'morsitans']
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D +L++   +    + G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 4   LVIEDNSLLRHHLMVQMREMGHQVDAAADAREADYFLNEHPPDIAIVDLGL--PDEDGLN 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+H  ++PL+ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSHQVKIPLLVLTAREGWQDKVTVLEAGADDYVTKPFHLEEVVARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P  +    R+  +      L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIELPPFLIDLSRRELMINEVNIRLTAFEYTIIETLIRNAGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKK++    ++ + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKMQANYPYEVITTVRGQGYRFDVN 223


>gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 255

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 18/211 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58
            +++DD   V+D          +S  G+N +  E+ +Q+     +E  + +   ++  G 
Sbjct: 26  ILVVDDEQAVRDSL-----RRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGM 80

Query: 59  KVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LE+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LARV ++ R
Sbjct: 81  DGLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVR 140

Query: 118 RLKVSNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           R  V +N++ +        G + +  + RD    G    L R E  +L+ L+ N+ K + 
Sbjct: 141 RSAVESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLT 200

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           + QI   ++G  D     N +E +I  LR+K
Sbjct: 201 RAQILEEVWGC-DFPTSGNALEVYIGYLRRK 230


>gi|307129681|ref|YP_003881697.1| putative two-component system response regulator [Dickeya dadantii
           3937]
 gi|306527210|gb|ADM97140.1| Putative two-component system response regulator [Dickeya dadantii
           3937]
          Length = 226

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 8/167 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +R +  +P+I ++        +   + G DD V KP + RE++AR+ A+ RR +
Sbjct: 60  IDVLRQVRRNRSIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               ++E       G + +    R  E +G+ F L   E  +LE LM +  + V K ++ 
Sbjct: 120 DKAEKSEDTGTLNYGELAICPSTRSSEWRGKAFDLTASEFNLLELLMRSSERVVTKDELS 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
               G   EA + + V+ HIS +R+KL    G +  +++ R +GY I
Sbjct: 180 EKCLGRRREAYDRS-VDVHISNIRQKLAALDGCNLTIETVRSVGYRI 225


>gi|167757440|ref|ZP_02429567.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
 gi|167703615|gb|EDS18194.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R   Q P+I ++    +   ++    G DD + KP    E+LAR+ A+ RR+ 
Sbjct: 62  IEVCRRLREIKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRMN 121

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQI 173
                 E   G +++     DP      F      L   E  +L  L+ N G  V++ +I
Sbjct: 122 FQKALLEYSYGEVKI-----DPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKI 176

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +DE V  NVVE +I    + LRNK+    +++ R +GY +
Sbjct: 177 LDQVWG-YDEDVSTNVVEVYI----RYLRNKIPGIKIETVRGVGYRL 218


>gi|84393831|ref|ZP_00992576.1| DNA-binding response regulator [Vibrio splendidus 12B01]
 gi|86148079|ref|ZP_01066380.1| DNA-binding response regulator [Vibrio sp. MED222]
 gi|84375526|gb|EAP92428.1| DNA-binding response regulator [Vibrio splendidus 12B01]
 gi|85834139|gb|EAQ52296.1| DNA-binding response regulator [Vibrio sp. MED222]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 12/153 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P+I +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S + A    I 
Sbjct: 73  TPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGSAAPILQIG 130

Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
             S D R  +V  QG+   L   E +++ Y M N+ K +++T++   IY   FD   + N
Sbjct: 131 DLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEHIYKQDFDR--DSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE  I ++RKK+  K+    + + R LGY ++
Sbjct: 189 TVEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|150016605|ref|YP_001308859.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903070|gb|ABR33903.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 16/212 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K GY+ +  DDG       S E          E++  I   ++        + R IR 
Sbjct: 23  LKKQGYVTIEADDGKKAMNLFSNE----------ENIDLIILDVMLPEYDGFTVCREIRK 72

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128
            S+VP+I ++        +   D G D+ ++KP     ++ARV A+ RR    +   E  
Sbjct: 73  KSKVPIIMLTARGEEFDEVFGLDIGADEYISKPFSPNILIARVNAVLRRANSEDKGKELK 132

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               + +        + GEV  L  +E  +L YL  N GK +++ QI   ++G +D   +
Sbjct: 133 DFNGLTIDHSAHQVVIDGEVVDLSPKEYELLIYLSENYGKALSREQILDKVWG-YDYYGD 191

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              V++HI++LR KL  K   D + + R  GY
Sbjct: 192 LRTVDTHINRLRIKLDRK--SDYIQTVRGYGY 221


>gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 6/132 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP  +  + ARV A+ RR         E G +R+ +  R   + GE  PL
Sbjct: 91  LDTGADDYLTKPFSYVVLRARVKALLRRRATGAPPVRELGALRLDTGARRVRLAGEEIPL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +LE+L+   G+ V+K  I   ++  F  + + N+VE ++S LR+    KLG   
Sbjct: 151 TAKEYAVLEHLVLRAGQVVSKADILEHVWD-FAYSGDPNIVEVYVSTLRR----KLGAGL 205

Query: 210 VDSKRFLGYSID 221
           + + R  GY ++
Sbjct: 206 IRTVRGAGYLLE 217


>gi|312865265|ref|ZP_07725493.1| putative response regulator MprA [Streptococcus downei F0415]
 gi|311099376|gb|EFQ57592.1| putative response regulator MprA [Streptococcus downei F0415]
          Length = 231

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 66/115 (57%), Gaps = 5/115 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGE-VF 147
            D+G D+ + KPI  +E+LAR+ ++ RRL    ++   E G +++  D  + E+      
Sbjct: 93  LDAGADEYLTKPISLKELLARLRSMERRLDDSFTSRTLECGSVKL--DVSEQEITASNTV 150

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            L  +E +++E+ M N  K+++  +I+  ++G  DE   ++ V  ++S LR+KL+
Sbjct: 151 RLAGKENKLMEFFMLNPAKKLSTQEIYQQVWGKDDEEANQDYVYVYVSYLRQKLQ 205


>gi|237735491|ref|ZP_04565972.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|229381236|gb|EEO31327.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R   Q P+I ++    +   ++    G DD + KP    E+LAR+ A+ RR+ 
Sbjct: 63  IEVCRRLREIKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRMN 122

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQI 173
                 E   G +++     DP      F      L   E  +L  L+ N G  V++ +I
Sbjct: 123 FQKALLEYSYGEVKI-----DPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKI 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +DE V  NVVE +I    + LRNK+    +++ R +GY +
Sbjct: 178 LDQVWG-YDEDVSTNVVEVYI----RYLRNKIPGIKIETVRGVGYRL 219


>gi|300775304|ref|ZP_07085166.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506044|gb|EFK37180.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 12/148 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I + H + P+I +S   S+   +   + G DD + KP H  E+LAR+ ++ RR    
Sbjct: 63  LKEIKKMHKKDPVIILSAKDSVDDKVAGLEIGADDYLAKPFHLAELLARIKSVIRR---- 118

Query: 123 NNRAETGPIRVFSDGRDPEVQ------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N+     IR  +   DPE +      GE+  L R+E  +L Y + +  K + KT +  A
Sbjct: 119 KNQDGENIIRYKNISIDPESRIVKVGNGELI-LNRKEYDLLYYFVIHPEKTLQKTTLAEA 177

Query: 177 IYGLF-DEAVEENVVESHISKLRKKLRN 203
           I+G + D+A   + + S I  LRKKL+ 
Sbjct: 178 IWGDYIDQADSLDFIYSQIKNLRKKLKT 205


>gi|167031376|ref|YP_001666607.1| DNA-binding response regulator CreB [Pseudomonas putida GB-1]
 gi|166857864|gb|ABY96271.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 226

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 17/226 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE--GFNSLEFEEWLQSSAREDVSAIEAFLIGKGE- 58
            ++++D A + D  +     DG S E     S   ++  Q  A  D+  ++   IG  + 
Sbjct: 4   ILIVEDEAAIADTLLYALQADGHSTEWVTLGSAALDQQRQRPA--DLIILD---IGLPDI 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E  R +R  ++VP++ +S        +   + G DD V KP   RE+ ARV AI +R
Sbjct: 59  SGFETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKR 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +     RAE   +          +Q     +   L R E R+L+ L+    +  ++ Q+ 
Sbjct: 119 MA---PRAEPATVAALFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLL 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
            A+ G+  +   E  ++SHI  LR KLR    G +P+ + R LGYS
Sbjct: 176 DAL-GVASDVGYERTIDSHIKSLRAKLRQVASGGEPIQTHRGLGYS 220


>gi|148546454|ref|YP_001266556.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148510512|gb|ABQ77372.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 232

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 8/164 (4%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L + R +R+  Q P++ ++        +   D G DD V KP+  R +LAR+
Sbjct: 57  LMLPGEDGLSICRRVRSQYQGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARI 116

Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            A+ RR +  +++ +    G +R+ +  R+  +  ++  L   E  +L  L +N G+ + 
Sbjct: 117 QALLRRSETVDSKRQDLAFGALRIDNRLREAHLGEQLIELTGAEFDLLWLLASNAGRVLT 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           + QIF+A+ G+  +  ++  ++  ISK+R     K+G DP+  +
Sbjct: 177 REQIFTALRGVGYDG-QDRSIDIRISKIRP----KIGDDPLQPR 215


>gi|315647964|ref|ZP_07901065.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315276610|gb|EFU39953.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 236

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 4/163 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           EL ++++    +P+I ++        +   D G DD + KP   RE+L+R+ ++ RR  K
Sbjct: 72  ELCKLVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYQK 131

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S+ RA  +   IR+ +       +G   PL   E R+L     + G+ + + Q+   I+
Sbjct: 132 PSHTRAIIDIDHIRINTLEGKVHKKGTEIPLTALEYRLLLIFGNHIGQVLTRNQLLEQIW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +  + V +N +  +I +LR+KL +  G    + + R LGY +
Sbjct: 192 DVAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYKV 234


>gi|293410323|ref|ZP_06653899.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
 gi|291470791|gb|EFF13275.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
          Length = 260

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+        + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDEPFPEKLIATIRGMGYS 254


>gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 239

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 10/163 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121
           R+      +P++ ++     Q  +     G DD V KP    E++AR+ A+ RR     V
Sbjct: 70  RMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHPTPV 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       + +  D  +    G V  L   E ++L YLM N G+ ++K QI   ++  +
Sbjct: 130 DDAVLRFADLELDDDSHEVRRAGRVVDLSPTEFKLLRYLMLNPGRVLSKAQILDHVWQ-Y 188

Query: 182 DEAVEENVVESHISKLRKKLRNKL---GFDP---VDSKRFLGY 218
           D   + N+VES+IS LR+K+ N     G  P   + +KR +GY
Sbjct: 189 DWGGDANIVESYISYLRRKIDNAPLPDGSTPEPLIATKRGVGY 231


>gi|163787243|ref|ZP_02181690.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
 gi|159877131|gb|EDP71188.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
          Length = 228

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
           FD+G DD + KPI  + +L++V A+ RRLK   N   T    G + ++ +      +G+ 
Sbjct: 98  FDAGADDYIAKPIKPKVLLSKVKALLRRLKSDENAVNTIVKIGNLVIYKEEYKITNKGKE 157

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
             LPR+E  +L  L    GK   + +I   ++G  +  V    ++ HI KLR+K+ +K
Sbjct: 158 ITLPRKEFELLSLLATKPGKVFKRDEILDKVWG-NEVVVGGRTIDVHIRKLREKIGDK 214


>gi|160880958|ref|YP_001559926.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160429624|gb|ABX43187.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 230

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP- 130
            +P++ ++   +    +   D G DD + KP    E+++RV A+ RR     N    G  
Sbjct: 80  NIPIMMVTAKTTEMDKVKGLDLGADDYITKPFGIMELVSRVKALLRR--AGGNGQNVGAL 137

Query: 131 ----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               + +  +     V GE   L  +E  +L YL+ N+G  +++ +I   ++G FD   E
Sbjct: 138 SFHDVSLHVEKHSVTVDGESCELTYKEFELLRYLLENQGIVLSRDRIMERVWG-FDYEGE 196

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V+ HI  LR KL    G D + + R +GY I
Sbjct: 197 SRTVDMHIKTLRHKL--GAGGDIIKTVRNVGYKI 228


>gi|254976797|ref|ZP_05273269.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094183|ref|ZP_05323661.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255315935|ref|ZP_05357518.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518594|ref|ZP_05386270.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651714|ref|ZP_05398616.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684746|ref|YP_003216031.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688404|ref|YP_003219538.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521513|ref|ZP_07407860.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260210909|emb|CBA66124.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214421|emb|CBE06850.1| two-component response regulator [Clostridium difficile R20291]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 20/185 (10%)

Query: 36  EWLQSSAREDVSA---IEAFLIGKGEKV--------------LELPRIIRAHSQVPLIGI 78
           E++Q      ++A   +EA  I K   +                + R+ R  + +P+I +
Sbjct: 19  EYMQKGGYTCITANDGVEALTILKSNNIDLMILDIMMPYLDGFSVCRVSREMTNIPIIIL 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSD 136
           +     +  L  ++ G DD + KP   + +LA+V A+ RR    +  N    G I +   
Sbjct: 79  TAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTTDIPKNSLSLGKIFIMVA 138

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R   V+ ++  L  +E  +L   M N  +  ++ ++ + I+G +D       V++HI  
Sbjct: 139 SRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG-YDFEGNTRTVDTHIKT 197

Query: 197 LRKKL 201
           LRKKL
Sbjct: 198 LRKKL 202


>gi|92112237|ref|YP_572165.1| two component heavy metal response transcriptional regulator
           [Chromohalobacter salexigens DSM 3043]
 gi|91795327|gb|ABE57466.1| two component heavy metal response transcriptional regulator,
           winged helix family [Chromohalobacter salexigens DSM
           3043]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 20/170 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117
           EL R+IR H QVP++ ++   +++  +   + G DD + KP    E+LARV  + R    
Sbjct: 61  ELLRLIRRHGQVPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLLRRGPL 120

Query: 118 ----RLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQ 172
               R +V++   +    RV         +GE    L  +E  +L+ L+   G+ +++T 
Sbjct: 121 RERERFQVADLHMDVLKRRV--------TRGETRLALTNKEFALLQLLLEREGEVLSRTL 172

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I S ++G+ FD   + NVVE  + +LR K+ +      + ++R +GY ++
Sbjct: 173 IASEVWGMNFDS--DTNVVEVAVRRLRAKVDDPFTRRLIHTERGMGYVLE 220


>gi|56420225|ref|YP_147543.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380067|dbj|BAD75975.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 226

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 7/152 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR+ S VP++ ++        +     G DD V KP    E+LAR+ A+ RR   
Sbjct: 62  ETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRR--T 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  R+      +  D  +  V+ E  P  L  +E  IL  L+ +  +  ++ QI ++++G
Sbjct: 120 AGGRSAIRAAGLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
              +  EE  V+SH+  +R+KLR K GF P D
Sbjct: 180 YLAD-TEERTVDSHMKNIREKLR-KAGF-PAD 208


>gi|332765503|gb|EGJ95721.1| qseB transcriptional activator [Shigella flexneri 2930-71]
          Length = 210

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 6/148 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132
           P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR    ++N    G + 
Sbjct: 65  PVLNLTAREALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVM 124

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y  +DE V  N VE 
Sbjct: 125 LDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY-TWDEEVTSNAVEV 183

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           H+  LR+    KLG D + +   +GY++
Sbjct: 184 HVHHLRR----KLGSDFIRTVHGIGYTL 207


>gi|317488360|ref|ZP_07946918.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325830811|ref|ZP_08164195.1| subtilin biosynthesis regulatory protein SpaR [Eggerthella sp.
           HGA1]
 gi|316912532|gb|EFV34083.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325487218|gb|EGC89661.1| subtilin biosynthesis regulatory protein SpaR [Eggerthella sp.
           HGA1]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G    EL R IR     P++ ++   S    +     G DD + KP    E+ A+VAA  
Sbjct: 56  GTDGFELCRAIRGSVDAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRAKVAAHL 115

Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR +     A + G +R+    R+  V     PL + E  + E+L  + G+  ++ QI  
Sbjct: 116 RRERRERKHALSFGALRLDLASREAYVGEAAVPLTKTEFDVCEFLARHPGQAFSRDQIVE 175

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + G +D     + +  H++  R KL+   G +P+D+   +GY
Sbjct: 176 NVLG-WDAESAASTISVHVANARAKLKAA-GAEPIDTVWGVGY 216


>gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R   + P+I ++   S+   +   D G DD + KP    E+LAR+ ++ RR+ 
Sbjct: 61  LEVARRLRESKKTPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLRRIA 120

Query: 121 V---SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   SN++         +R+  + R      ++  L +RE  +L  L+ N     ++ Q+
Sbjct: 121 IETESNDKHRAIINFKDLRIEKENRIARRDNQIINLTKREYDLLLTLVENINVVQSREQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G FD  VE NVV+ +I  LR K+
Sbjct: 181 LKEVWG-FDSEVETNVVDVYIRYLRNKI 207


>gi|242372481|ref|ZP_04818055.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349823|gb|EES41424.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 222

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           D+  ++  L G   + L LP I + H+   +I IS    +   ++    G DD + KP  
Sbjct: 48  DIVLLDLMLPGISGETL-LPLIKKEHNS-KIIVISAKTDIDEKVNLLSMGADDYITKPFD 105

Query: 105 HREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
            +E+ ARV    R +   +N  E     +++  D R   ++  + PL   E  IL  LM 
Sbjct: 106 SKELTARVNVQLRNINNKSNNKELIWKDLKLDKDKRKVTLKNSLIPLTNTEFEILTILMQ 165

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
                ++K +++ A+ G++    ++N +  H+S +RKK+ 
Sbjct: 166 EPETAISKQKLYVAVQGVY--IGDDNTISVHVSNIRKKIN 203


>gi|255035592|ref|YP_003086213.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254948348|gb|ACT93048.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 226

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L ++IR      P++ +S        +   D G DD + KPIH  E+L+R+ A+ RR  
Sbjct: 61  QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +N      + V  D    +  G+   L  +E R L YLM N+ K + ++QI   +
Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +   +     NVV+ +IS LR K+
Sbjct: 181 WST-NMDTYTNVVDVYISYLRNKI 203


>gi|227501322|ref|ZP_03931371.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227216555|gb|EEI81961.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 12/157 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I ++        +   D G DD + KP    E L+RV A+ RR    +N+ 
Sbjct: 65  IRQFSNLPIIMLTAKSDEFDKVMGLDLGADDYITKPFSILEFLSRVKAVLRR----SNKK 120

Query: 127 ETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +T  I     R+ +  R  +V+GE   L  +E  +L   ++N G  +++      I+G +
Sbjct: 121 DTDHISYKEVRLNTKKRSVKVKGEKVDLTYKEFEMLLLFLSNIGNVISRDDFLLKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D   E   V+ HI+ LR KL+    +  +++ R LGY
Sbjct: 180 DYEGETRTVDVHIASLRAKLKESGKY--IETVRNLGY 214


>gi|284993057|ref|YP_003411611.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066302|gb|ADB77240.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 20/215 (9%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRA-HS 71
           IA F + G+   GF +    +   + A       +  ++     G    E+ R +RA   
Sbjct: 13  IAAFVEKGLRANGFATAVVADGRTARAAAASGDFDLMILDIGLPGMDGFEVLRALRADRV 72

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P++ ++   S+Q T+   + G DD + KP    E+LARV     RL++S  R     +
Sbjct: 73  TIPVVILTARDSVQDTVAALEGGADDYMPKPFRFEELLARV-----RLRLSGGRQTETTV 127

Query: 132 RVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
               D       R  +       L  RE  + E  + + G+ +A+ Q+ S ++G +D   
Sbjct: 128 LTCGDLSLDLRTRRAQAGSRTVALSAREFALAETFLRHPGQVLAREQLLSHVWG-YDFDP 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             NVV+ ++    + LR KLG D +++ R +GY +
Sbjct: 187 GSNVVDVYV----RYLRRKLGADRIETVRGMGYRL 217


>gi|110642074|ref|YP_669804.1| transcriptional regulatory protein YedW [Escherichia coli 536]
 gi|110805939|ref|YP_689459.1| transcriptional regulatory protein YedW [Shigella flexneri 5 str.
           8401]
 gi|227885603|ref|ZP_04003408.1| response regulator [Escherichia coli 83972]
 gi|237705927|ref|ZP_04536408.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|300940426|ref|ZP_07155010.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300975470|ref|ZP_07173018.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300994173|ref|ZP_07180744.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|301050665|ref|ZP_07197529.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|306814209|ref|ZP_07448375.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|331647562|ref|ZP_08348654.1| transcriptional activator protein CopR [Escherichia coli M605]
 gi|26108643|gb|AAN80846.1|AE016762_99 Probable transcriptional Regulatory protein yedW [Escherichia coli
           CFT073]
 gi|110343666|gb|ABG69903.1| probable transcriptional regulatory protein YedW [Escherichia coli
           536]
 gi|110615487|gb|ABF04154.1| putative 2-component transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|226900684|gb|EEH86943.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|227837176|gb|EEJ47642.1| response regulator [Escherichia coli 83972]
 gi|281601411|gb|ADA74395.1| Two component heavy metal response transcriptional regulator,
           winged helix family precursor [Shigella flexneri
           2002017]
 gi|300297662|gb|EFJ54047.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|300304997|gb|EFJ59517.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|300410360|gb|EFJ93898.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300454767|gb|EFK18260.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|305852368|gb|EFM52819.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|307553979|gb|ADN46754.1| heavy metal response regulator [Escherichia coli ABU 83972]
 gi|312946560|gb|ADR27387.1| transcriptional regulatory protein YedW [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315286723|gb|EFU46148.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3]
 gi|315290199|gb|EFU49579.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1]
 gi|315296452|gb|EFU55752.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3]
 gi|323956362|gb|EGB52105.1| heavy metal response regulator [Escherichia coli H263]
 gi|324005926|gb|EGB75145.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2]
 gi|324013430|gb|EGB82649.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1]
 gi|331043286|gb|EGI15424.1| transcriptional activator protein CopR [Escherichia coli M605]
          Length = 260

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 79  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +++ S  +          L R+E ++L  L +
Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254


>gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum]
 gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
          Length = 232

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 18/211 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58
            +++DD   V+D          +S  G+N +  E+ +Q+     +E  + +   ++  G 
Sbjct: 3   ILVVDDEQAVRDSL-----RRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGM 57

Query: 59  KVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LE+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LARV ++ R
Sbjct: 58  DGLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVR 117

Query: 118 RLKVSNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           R  V +N++ +        G + +  + RD    G    L R E  +L+ L+ N+ K + 
Sbjct: 118 RSAVESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLT 177

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           + QI   ++G  D     N +E +I  LR+K
Sbjct: 178 RAQILEEVWG-CDFPTSGNALEVYIGYLRRK 207


>gi|46202620|ref|ZP_00052911.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 8/188 (4%)

Query: 37  WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           +L +S R D   I+  L G  G  +++  R   A +  P++ +S    +   +    +G 
Sbjct: 38  FLATSERWDAMIIDRMLPGLDGLSIIQALRA--AGNTTPVLVLSALGKVDDRVRGLKAGG 95

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           DD + KP    E+LAR+ A+ RR+  +    R +   + +    R     G+   L  RE
Sbjct: 96  DDYLVKPYAFAELLARIEALSRRVSSTQPETRLKVEDLEMDLLARAVTRGGQEIDLQPRE 155

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
            R+LEYLM + G+ V +T +   ++   FD   + N+++ HIS+LR+K+        + +
Sbjct: 156 FRLLEYLMRHAGQVVTRTMLLENVWEYHFDP--QTNLIDVHISRLRQKVDKDFELPLIHT 213

Query: 213 KRFLGYSI 220
            R  GY++
Sbjct: 214 VRGAGYTL 221


>gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
           Broad-1]
 gi|325948598|gb|EGD40699.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
           Broad-1]
          Length = 244

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 20/205 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W  ++A     A+ A            +++   + +  L R+   +  VP++ +
Sbjct: 37  ALRYEGWEVAAAHTGTKAVSAARDFTPDAIVLDWMLPDFDGLEVLRRVRSTNPAVPVLFL 96

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAETGPIRVF 134
           +   +++  +    +G DD V KP    E++AR+ A+ RR   +    ++    G + + 
Sbjct: 97  TAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRALMRRAGATRIEEHSVIHVGDLTMD 156

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D R+    GE   L   E  +L +LM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 157 EDSREVRRAGEEISLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 215

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGY 218
           S LRKK+    G +P + + R  GY
Sbjct: 216 SYLRKKI--DAGREPMIHTMRGAGY 238


>gi|293609579|ref|ZP_06691881.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828031|gb|EFF86394.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GEKVL   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  
Sbjct: 59  GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116

Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R+  +S     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  
Sbjct: 117 RKQTLSQQSVLTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A+Y  + E +E N +E  I +LRK    K+G   + + R LGY +
Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216


>gi|289765639|ref|ZP_06525017.1| two-component system response regulator [Fusobacterium sp. D11]
 gi|289717194|gb|EFD81206.1| two-component system response regulator [Fusobacterium sp. D11]
          Length = 187

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 5/159 (3%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           DV  ++  L  K  K  EL +  R  +  P+I I+   S+   ++  D G +D + KP  
Sbjct: 10  DVILLDLMLPKKSGK--ELCQEFRKLNNTPIIIITAKDSILDKVELLDLGANDYICKPFA 67

Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
             E+LAR+    R  + S ++       I++    +   +Q E   L + E  ILEY M 
Sbjct: 68  MEELLARIRVATRNKENSVDKQFYLEKDIKLDLSAKRVYLQEEEVNLTKTEFLILEYFMK 127

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           N+G   ++ +I   ++G +D   EE +V+ +I+ LRKK+
Sbjct: 128 NKGLSCSREKIIIGVWG-YDFDGEEKIVDVYINSLRKKI 165


>gi|258508221|ref|YP_003170972.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257148148|emb|CAR87121.1| Two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 11/158 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE VL     IR  SQVP++ ++       T+     G +D + KP    E+LAR+    
Sbjct: 59  GESVLT---TIRKTSQVPVLVLTAIQEKVKTVALLQQGANDYLTKPFDIDELLARIQVQL 115

Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R++      +N++ + G I++        V  +   LP++E  +L  +M +  +   K+Q
Sbjct: 116 RQVSGQPVTTNDQLKVGEIQLDPKRHVVTVNQQTLTLPKKEYDMLALMMRDPHQVFDKSQ 175

Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           ++  ++G  F  A  +N +  HIS LR K+ N+L  DP
Sbjct: 176 LYEHVWGEPFLNA--DNTLNVHISNLRTKI-NELAHDP 210


>gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8]
 gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8]
 gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
          Length = 229

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV +I RR +
Sbjct: 61  MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSR 120

Query: 121 VSNNRA-----ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
           +   +      E GP+ +  D  + + ++G+   L   E  IL YL+A+   RV +  +I
Sbjct: 121 MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGIL-YLLASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
           F  ++   +  V    V  H+S LR K+    G + V    + +GY ID
Sbjct: 180 FERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 6/132 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP  +  + ARV A+ RR         E G +R+ +  R   + GE  PL
Sbjct: 91  LDTGADDYLTKPFSYVVLRARVKALLRRRATGAPPVRELGALRLDTGARRVRLAGEEIPL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +LE+L+   G+ V+K  I   ++  F  + + N+VE ++S LR+    KLG   
Sbjct: 151 TAKEYAVLEHLVLRAGQVVSKADILEHVWD-FAYSGDPNIVEVYVSTLRR----KLGAGL 205

Query: 210 VDSKRFLGYSID 221
           + + R  GY ++
Sbjct: 206 IRTVRGAGYLLE 217


>gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
 gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
          Length = 243

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 20/143 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147
           G DD V KP    E++AR+ AI RR   +  + E  PI       +  D  D    G+  
Sbjct: 100 GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVTRAGKPI 156

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E ++L YLM N G+ ++K QI   ++  +D   +  +VES+IS LRKK+ +    
Sbjct: 157 DLSPTEYKLLCYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDDITVE 215

Query: 208 DP----------VDSKRFLGYSI 220
           D           +++KR +GY I
Sbjct: 216 DEDGTTHKVQPLIETKRGIGYMI 238


>gi|150018981|ref|YP_001311235.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905446|gb|ABR36279.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 14/160 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I ++   S    +   + G DD V KP + + +LAR+ A+ RR   +N+ +
Sbjct: 67  IRKEKNIPIIIVTSRDSEMDEIMSMNLGADDFVTKPYNTQILLARITAVLRRTLGNNSIS 126

Query: 127 ETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E     V  +G    V         E   L + E RIL  LM N+   V++  +   ++ 
Sbjct: 127 EI----VEHNGLKLNVSNGSVIFGDEKIDLTKNEFRILLCLMKNKECIVSREDLMDYLWN 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
             D  +++N +  ++++LRKKL+ ++GF D +++KR +GY
Sbjct: 183 -SDLYIDDNTLSVNVTRLRKKLQ-EIGFKDGIETKRGIGY 220


>gi|325122844|gb|ADY82367.1| two component transcriptional regulator, winged helix family
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GEKVL   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  
Sbjct: 59  GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116

Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R+  +S     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  
Sbjct: 117 RKQTLSQQSVLTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A+Y  + E +E N +E  I +LRK    K+G   + + R LGY +
Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216


>gi|324114941|gb|EGC08906.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDRLIGDGIKTGLIKMGFSVDWFTGGREGKEALYSAPYDAVILDLTLPGIDGRDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R      + P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LREWR--ENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE  PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LR+KL +  GF  + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHIHHLRRKLGS--GF--IRTVHGIGYTL 216


>gi|304439115|ref|ZP_07399034.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372474|gb|EFM26061.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 217

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 18/166 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ +  R  S +P+I +S        +   + G DD + KP     + A++   + ++ 
Sbjct: 58  LEIIKYTRQSSSIPIIVLSAIDLEAYIISAINLGADDYLTKPFSLGILEAKIKRAFEKIV 117

Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQ 172
            S+       + ++  DG D       F        L R E +IL YL+ N+ + + K  
Sbjct: 118 SSD-------LNLYKKDGLDFNFNENTFFVDNKNIDLTRTETKILYYLIKNKSQVITKEL 170

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +F  ++G+ DE +++N +  +IS++R KL+    +DP+++   +GY
Sbjct: 171 LFDFVWGIDDEFIDQNTLSVNISRIRNKLK---PYDPIETVFGVGY 213


>gi|30063407|ref|NP_837578.1| transcriptional regulatory protein YedW [Shigella flexneri 2a str.
           2457T]
 gi|56480011|ref|NP_707854.2| transcriptional regulatory protein YedW [Shigella flexneri 2a str.
           301]
 gi|161486196|ref|NP_754279.2| transcriptional regulatory protein YedW [Escherichia coli CFT073]
 gi|30041659|gb|AAP17387.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|56383562|gb|AAN43561.2| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|222033705|emb|CAP76446.1| transcriptional regulatory protein yedW [Escherichia coli LF82]
 gi|313649593|gb|EFS14017.1| transcriptional activator protein irlR [Shigella flexneri 2a str.
           2457T]
 gi|323186723|gb|EFZ72045.1| transcriptional activator protein irlR [Escherichia coli RN587/1]
 gi|332757540|gb|EGJ87875.1| transcriptional activator protein irlR [Shigella flexneri K-671]
 gi|333003072|gb|EGK22626.1| transcriptional activator protein irlR [Shigella flexneri VA-6]
 gi|333003228|gb|EGK22774.1| transcriptional activator protein irlR [Shigella flexneri K-218]
 gi|333004084|gb|EGK23618.1| transcriptional activator protein irlR [Shigella flexneri K-272]
 gi|333017619|gb|EGK36931.1| transcriptional activator protein irlR [Shigella flexneri K-304]
          Length = 223

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 181 FDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217


>gi|309778806|ref|ZP_07673579.1| DNA-binding response regulator BaeS [Ralstonia sp. 5_7_47FAA]
 gi|308922514|gb|EFP68138.1| DNA-binding response regulator BaeS [Ralstonia sp. 5_7_47FAA]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 10/194 (5%)

Query: 36  EWL----QSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           EWL     ++ R   +A E  L+     G+  LE+ R +RA S+VP++ ++        L
Sbjct: 27  EWLADGTHATQRVRETAPELVLLDLMLPGKDGLEICREVRAFSEVPIVMVTARVEEIDRL 86

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
              + G DD V KP   RE++AR+  I RR++      E+  + + +      ++G+   
Sbjct: 87  LGLELGADDYVCKPFSPRELVARIKTILRRVQRGGGVPESA-LHIDAAAYAATLRGQRLD 145

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGF 207
           L   E R+L  L    G+ ++++ +   IY      V +  V++HI  LR+K+     G 
Sbjct: 146 LTPVEFRLLAALAGAPGRILSRSNLLEQIYD-DHRIVTDRTVDTHIKNLRRKMEQVSPGT 204

Query: 208 DPVDSKRFLGYSID 221
           + + S   +GY +D
Sbjct: 205 EMIHSVYGVGYRLD 218


>gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 231

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL R +R+ + VP++ +S   +    +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 66  ELCRRLRSKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +N+      I +  D      +     L  RE  +L  LM N GK V++  +   
Sbjct: 126 GDFPGANHAITASGITLDEDAHTASGEHGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
            +G ++   E   V++HI +LR K+    G+DP  V++ R  GY
Sbjct: 186 AWG-WEYLTETKTVDTHIKRLRDKIEGA-GYDPGLVETVRGYGY 227


>gi|302876970|ref|YP_003845603.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687661|ref|ZP_07630107.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579827|gb|ADL53839.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 14/168 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL ++ RA S +P+I ++        +   D G DD + KP   +E+++R+ ++ RR   
Sbjct: 61  ELCKMARAKSDMPIIFLTACDDEVNVVMGLDMGADDYITKPFRIKELISRIKSVLRRCNK 120

Query: 122 SNNRA---ETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            NN     E G I + + D +  +   E+  L   E R+L     N G+ ++++Q+   I
Sbjct: 121 ENNLKNIFEIGDICINTLDAKVYKKNIEI-SLTALEYRLLLVFANNIGQVLSRSQLLEGI 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
           + +  + V +N +  +I ++R+KL +    DP     + + R +GY I
Sbjct: 180 WDVAGDFVNDNTLTVYIKRIREKLED----DPQNPRIIKTVRGMGYRI 223


>gi|226947549|ref|YP_002802640.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226843600|gb|ACO86266.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S++P+I IS   S    +   ++G DD + KP +   I+A++ +  RR      
Sbjct: 66  RRIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   ++ + +  + E + E   + ++E  +LEYLM    K V +  +   I+
Sbjct: 126 PKVDEKIVELQGLKFYKERSEIEFKDERVIITKKEGILLEYLMKKYPKVVNRDFLLEKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
               E VEEN +  ++S++RK+L ++LG  D +++ R +GY ++
Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HELGIEDGIETVRGVGYRLN 227


>gi|182679197|ref|YP_001833343.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635080|gb|ACB95854.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 227

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   +    SG DD + KP    E+LARV A+ RR K      ET   
Sbjct: 72  ETPVLILSALGQVDDRVKGLRSGGDDYLPKPYAFSELLARVEALARR-KPPGTAEETIYR 130

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            G + +          G+   L  RE R+LEYLM + G+ V +T +   ++   FD   +
Sbjct: 131 IGGLELDRLAHKLTRDGKEIILQPREFRLLEYLMKHAGQVVTRTMLLEHVWDYHFDP--Q 188

Query: 187 ENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            NV++ HIS+LR K+    GFDP  + + R +GY I
Sbjct: 189 TNVIDVHISRLRSKIDK--GFDPPLLQTIRGIGYMI 222


>gi|167835609|ref|ZP_02462492.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 220

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 119 --QSGRSESLIRHGTLTLDPASHQVTLGGAPVALSAREFALLEALLARPGAVLSKSQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216


>gi|167566116|ref|ZP_02359032.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
          Length = 219

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 6/151 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETG 129
           S VP+I ++    +   +   ++G DD + KP    E+ ARV+A+ RR   + N   + G
Sbjct: 71  STVPVIILTALDQVANRIAGLNAGADDYLVKPFDLSELSARVSAVARRYSGNPNPLVKLG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + + +     +       L   E  +LE L+ + G  ++K+Q+ + +Y   DE V  N 
Sbjct: 131 ELAIDTAVHSVKRGDARVDLTASEWALLETLIQHPGMILSKSQLEARLYSFNDE-VGSNT 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E H+S+LRK    KLG D +++ R LGY +
Sbjct: 190 IEVHVSRLRK----KLGADMIETVRGLGYRL 216


>gi|332973098|gb|EGK11033.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 239

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 19/172 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R+ + VP++ ++   +    L     G DD + KP +  E++ARV A  RR ++
Sbjct: 63  EVCRRLRSFTTVPILFLTARSNDLDKLMGLGIGGDDYITKPFNPLEVVARVKAQLRRQQL 122

Query: 122 SNN--RAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    R ET     G  R+        V+G   P P RE ++L +L  +  +  +K+Q++
Sbjct: 123 AGQQIREETRIHDWGRFRMDEGAGQLTVEGTAVPCPAREFQLLSFLCRHPNQIFSKSQLY 182

Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSI 220
             ++G  +E++ E+N V  H+ +LR+K+      DP   +     R LGY +
Sbjct: 183 EQVWG--EESLGEDNTVMVHVRRLREKIEP----DPAKPRYLVTVRGLGYKL 228


>gi|260576068|ref|ZP_05844062.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259021767|gb|EEW25069.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 225

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R +RA   + P++ ++    +   ++  ++G DD + KP    E++ARV A+ RR 
Sbjct: 60  LSLVRALRAAGRKTPVLFLTALGGIDDRVEGLEAGGDDYLTKPFAFAELMARVNALARRP 119

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            V   +       + +    R+    G+   L  +E  +LE LM N G+ V +T +   +
Sbjct: 120 PVQEVKTLLRVADLELDLMRREARRAGQQIDLLPKEFTLLEVLMRNEGRVVTRTMLLERV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   FD   + +VVE+HIS+LR K+        + + + +GYSI
Sbjct: 180 WDFHFDP--KTSVVETHISRLRAKIDRPFAVALLHTVKNMGYSI 221


>gi|120598570|ref|YP_963144.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146293351|ref|YP_001183775.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120558663|gb|ABM24590.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145565041|gb|ABP75976.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319426651|gb|ADV54725.1| two component transcriptional regulator, PhoP [Shewanella
           putrefaciens 200]
          Length = 224

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 3/154 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR          
Sbjct: 69  AELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVIT 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           +G +++    +   +  EV  +   E  ILEYLM +  + VAK ++   IYG  D+  + 
Sbjct: 129 SGELKLDLAAKQVTLANEVMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDP 186

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 187 NTIEVMVSRLRKKLTRDGIDNPIVTIRGQGYKFN 220


>gi|261410066|ref|YP_003246307.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286529|gb|ACX68500.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 247

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 28/216 (12%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGK-----------GEKVLELPRIIRAHS-QVPLI 76
           FN LE E +    A + +SA+E  L  +           G+  +++ R +RA + Q+P+I
Sbjct: 24  FN-LEKEGYEVICAFDGISAVEIALTQRPDLMLLDLMLPGKDGMDVCREVRAANLQIPII 82

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TG------ 129
            ++        +   + G DD V KP   REILARV A  RR +  +N A+ TG      
Sbjct: 83  MLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAHLRRQQKPDNSADNTGGTSAGG 142

Query: 130 -PIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             +R+F    D ++      GE   L  RE  ++ YL  N GK + +  +  A++G F+ 
Sbjct: 143 QGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKVMTREHLLQAVWG-FEY 201

Query: 184 AVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
             +   V+  I +LR+K+  N    + + ++R LGY
Sbjct: 202 FGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGY 237


>gi|290962001|ref|YP_003493183.1| two component positive transcriptional regulator PhoP [Streptomyces
           scabiei 87.22]
 gi|260651527|emb|CBG74650.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL
           POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22]
          Length = 242

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 9/133 (6%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVF 147
           +G DD V KP    E+ AR+ A+ RR +   +  E+  +RV     DP        G   
Sbjct: 109 AGGDDYVTKPFGLDEVAARIGAVLRRTRRPEH--ESSVLRVADLELDPATHSVRRGGTAI 166

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E R+L YLM + G+ V + Q+   ++  +D   ++ VV ++IS LR+KL + LG 
Sbjct: 167 GLSPTEFRLLRYLMLHSGRIVPRAQLLEHVWS-YDFNGDDTVVATYISYLRRKL-DALGP 224

Query: 208 DPVDSKRFLGYSI 220
             + ++R +GY+I
Sbjct: 225 PLIHTQRGIGYAI 237


>gi|259649537|dbj|BAI41699.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 227

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 11/158 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE VL     IR  SQVP++ ++       T+     G +D + KP    E+LAR+    
Sbjct: 62  GESVL---TTIRKTSQVPVLVLTAIQEKVKTVALLQQGANDYLTKPFDIDELLARIQVQL 118

Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R++      +N++ + G I++        V  +   LP++E  +L  +M +  +   K+Q
Sbjct: 119 RQVSGQPVTTNDQLKVGEIQLDPKRHVVTVNQQTLTLPKKEYDMLALMMRDPHQVFDKSQ 178

Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           ++  ++G  F  A  +N +  HIS LR K+ N+L  DP
Sbjct: 179 LYEHVWGEPFLNA--DNTLNVHISNLRTKI-NELAHDP 213


>gi|296136300|ref|YP_003643542.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295796422|gb|ADG31212.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------V 121
           ++ S +P++ ++   +L+  +   D G DD + KP    E+LAR+ A+ RR        +
Sbjct: 68  QSGSNLPILILTARDALEDRVRGLDLGADDYLVKPFESAELLARIRAVARRQGGQAQPVL 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN   E  P+      R+   QG+   L  RE  +L  L+   G  ++++++   IYG +
Sbjct: 128 SNGVLELDPV-----SREVRFQGQTQRLTAREYALLHALLLRPGAILSRSELEDRIYG-W 181

Query: 182 DEAVEENVVESHISKLRKKL 201
           +E VE N VE  I  LRKKL
Sbjct: 182 NEEVESNAVEFLIHSLRKKL 201


>gi|255527221|ref|ZP_05394104.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255509085|gb|EET85442.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 224

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 8/160 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS        +   + G DD + KP     +L +V A+ RR     N  
Sbjct: 67  IRMLSKVPIIFISSRTEEMDIIIATNMGGDDYLTKPFSINILLTKVNALLRRTYAYFNDL 126

Query: 127 ETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           E+  I    +  + +D  +   G+   L R E +IL  LM N+G  V++ +I  +++   
Sbjct: 127 ESDVITHKGLILNLKDDTIMYNGKSLQLTRNEFKILHILMKNKGSIVSRDRIIRSLWQ-- 184

Query: 182 DEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           DE+ V++N +  +I++LRKKL++    + + +++ +GY +
Sbjct: 185 DESFVDDNTLTVNITRLRKKLKDIGLENYIQTQKSMGYIV 224


>gi|116054192|ref|YP_788636.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115589413|gb|ABJ15428.1| two-component response regulator CreB [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+       
Sbjct: 67  LRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAPRPAAL 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              A +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+ G+  
Sbjct: 127 EEAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL-GVAS 185

Query: 183 EAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYS 219
           EA  E  ++SHI  LR KLR  N+ G + + + R LGYS
Sbjct: 186 EAGYERNIDSHIKSLRAKLRQVNERG-EAIQTHRGLGYS 223


>gi|260554524|ref|ZP_05826745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|260411066|gb|EEX04363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
          Length = 228

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
           +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + +  
Sbjct: 69  QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 128

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ + FD
Sbjct: 129 NELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNINFD 188

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N ++  + +LR K+        + + R LGY I
Sbjct: 189 --TDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 224


>gi|269798762|ref|YP_003312662.1| transcriptional regulator [Veillonella parvula DSM 2008]
 gi|269095391|gb|ACZ25382.1| two component transcriptional regulator, winged helix family
           [Veillonella parvula DSM 2008]
          Length = 224

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129
           +  P++ ++   SLQ  +   ++G DD + KP    E+ AR+ A+ RR  + + N    G
Sbjct: 71  NTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNARHAQNDIHVG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P+ +    R  +  GE   L  +E  +L YL +N    +++ QI   ++  +D     N+
Sbjct: 131 PLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE-YDYESYSNL 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ +I  LRKK+        + + R +GY
Sbjct: 190 IDVYIKNLRKKIDTDENVKLIQTVRGVGY 218


>gi|182679117|ref|YP_001833263.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635000|gb|ACB95774.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 218

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L  I R++S++ ++ ++ +  +   +     G DD + KP    E++AR+ A+YRR   V
Sbjct: 63  LKAIRRSNSKMAILVMTAHDQISDRIAGLSEGADDYIVKPFDLDELIARIDAVYRRYAPV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    +   I +   G+     G    L  +E  ILE L    G  ++K +I  A+YG F
Sbjct: 123 AEEGIKINDIHLDLHGQRLTKSGVDVELTAKEWAILELLARRPGMIISKERIEEALYG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E +E N +E  +S++RK    K+G + + + R  GY +
Sbjct: 182 GEEIESNAIEVFVSRIRK----KVGRNIIRTVRGRGYCL 216


>gi|197121352|ref|YP_002133303.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171201|gb|ACG72174.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 231

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 9/208 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + ++++D A V+    A     G  +E   ++   E L      DV  ++  L  G G  
Sbjct: 7   LVLVVEDEAPVRRFLRAALAAHGYRIEEAGTVAEAEQLAPGHNPDVFLLDLGLPDGDG-- 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            ++L R +R  ++ P+I +S     +  +   D+G DD + KP    E+LAR+    R  
Sbjct: 65  -IDLARRLREWTRAPIIVLSARGREEDKVTALDAGADDYLTKPFGVNELLARLRVALRHA 123

Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +     E GP+R+    R+    G    L   E R+L  L  N GK +   QI   
Sbjct: 124 QAPPDGPPVVEVGPLRIDLARREITRSGAEVRLTPTEYRVLAMLARNAGKVLTHRQILRE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           ++G    A E + V   +++LRKKL ++
Sbjct: 184 VWG--PNATEAHYVRVQVAELRKKLEDE 209


>gi|26987916|ref|NP_743341.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24982625|gb|AAN66805.1|AE016309_7 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 232

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 8/164 (4%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L + R +R+  Q P++ ++        +   D G DD V KP+  R +LAR+
Sbjct: 57  LMLPGEDGLSICRRVRSQYQGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARI 116

Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            A+ RR +  +++ +    G +R+ +  R+  +  ++  L   E  +L  L +N G+ + 
Sbjct: 117 QALLRRSETVDSKRQDLAFGALRIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLT 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           + QIF+A+ G+  +  ++  ++  ISK+R     K+G DP+  +
Sbjct: 177 REQIFTALRGVGYDG-QDRSIDIRISKIRP----KIGDDPLQPR 215


>gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 235

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 9/139 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-------KVSNNRAETGPIRVFSDGRDPEVQ 143
            + G DD + KP   RE++ARV AI RR+       +V++     G +++  D  +    
Sbjct: 93  LELGADDYLTKPFSPREVVARVKAILRRMNQQTVAEEVTDGTILIGDVKIVPDNYEAFKA 152

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR- 202
            E   L  +E  +L YL  N+G+ + + Q+ SAI+  +D   +  +V+ HIS +R+K+  
Sbjct: 153 EERLELTPKEFELLVYLAKNKGRVLTRDQLLSAIWN-YDFVGDTRIVDVHISHVREKIEP 211

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 212 NTKKPIYIKTIRGLGYKME 230


>gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 22/212 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  ++  G       DG   +   + + EE L  +  E    I   ++      L
Sbjct: 5   ILIIDDERIMVKGLKFSLEQDGYETDA--AYDGEEGLNKALNEHYDLIILDIMLPKINGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +   + G DD + KP +  E+ ARV AI+RRL +
Sbjct: 63  EVCRQVREQSSVPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIFRRLDL 122

Query: 122 SNNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++ +     ++            V  DGRD  +  + F L       LE L+  RGK  +
Sbjct: 123 ASPKKNDKYLKIKNLTINFENRTVLVDGRDANLTAKEFDL-------LEVLVNGRGKIFS 175

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + Q+   ++  +D   +   V+ HI +LR+KL
Sbjct: 176 REQLLETVWK-YDYLGDLRTVDVHIRRLREKL 206


>gi|329925042|ref|ZP_08279986.1| transcriptional regulatory protein WalR [Paenibacillus sp. HGF5]
 gi|328940161|gb|EGG36493.1| transcriptional regulatory protein WalR [Paenibacillus sp. HGF5]
          Length = 243

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 28/216 (12%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGK-----------GEKVLELPRIIRAHS-QVPLI 76
           FN LE E +    A + +SA+E  L  +           G+  +++ R +RA + Q+P+I
Sbjct: 20  FN-LEKEGYEVICAFDGISAVEIALTQRPDLMLLDLMLPGKDGMDVCREVRAANLQIPII 78

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TG------ 129
            ++        +   + G DD V KP   REILARV A  RR +  +N A+ TG      
Sbjct: 79  MLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAHLRRQQKPDNSADNTGGTSAGG 138

Query: 130 -PIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             +R+F    D ++      GE   L  RE  ++ YL  N GK + +  +  A++G F+ 
Sbjct: 139 QGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKVMTREHLLQAVWG-FEY 197

Query: 184 AVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
             +   V+  I +LR+K+  N    + + ++R LGY
Sbjct: 198 FGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGY 233


>gi|325498579|gb|EGC96438.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii
           ECD227]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 13  ILLIEDDRLIGDGIKTGLIKMGFSVDWFTGGREGKEALYSAPYDAVILDLTLPGIDGRDI 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R      + P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 73  LREWR--ENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE  PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 131 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LR+KL +  GF  + +   +GY++
Sbjct: 190 TWDEEVTSNAVEVHIHHLRRKLGS--GF--IRTVHGIGYTL 226


>gi|307944203|ref|ZP_07659544.1| protein PetR [Roseibium sp. TrichSKD4]
 gi|307772549|gb|EFO31769.1| protein PetR [Roseibium sp. TrichSKD4]
          Length = 232

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 16/226 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D    L  ++G  +    + +      S    D+  ++  +   GE  L
Sbjct: 13  LLLVDDDQRIRDLLGRLLAENGYRVTTAANAQEARTCLSGLSFDLLILDVMM--PGETGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           +L   +R HS VP++ ++        +   + G DD + KP   +E+L R++AI RR   
Sbjct: 71  DLASWLRDHSDVPILMLTARSDASDRIAGLEVGADDYLAKPFEPKELLLRLSAILRRGGP 130

Query: 120 KVSNNRAET--GPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +V++   E   GP  VF+ GR     G+    L  RE++IL       G  V + +I   
Sbjct: 131 RVTHVATEIKFGPF-VFNPGRGELKNGDAPIRLTDREKQILSIFAEQPGATVPRHKIVGD 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSI 220
                D  + E  V+  I++LR+K+ +  G +PV   + R +GY +
Sbjct: 190 -----DSGLGERTVDVQINRLRRKIEDDPG-NPVYLQTVRGIGYRL 229


>gi|227877766|ref|ZP_03995799.1| two-component system regulator [Lactobacillus crispatus JV-V01]
 gi|256843617|ref|ZP_05549105.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256850093|ref|ZP_05555523.1| two-component system regulator [Lactobacillus crispatus MV-1A-US]
 gi|262047381|ref|ZP_06020338.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380726|ref|ZP_06626774.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|312984347|ref|ZP_07791689.1| DNA-binding response regulator CsrR [Lactobacillus crispatus
           CTV-05]
 gi|227862625|gb|EEJ70111.1| two-component system regulator [Lactobacillus crispatus JV-V01]
 gi|256615037|gb|EEU20238.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256713065|gb|EEU28056.1| two-component system regulator [Lactobacillus crispatus MV-1A-US]
 gi|260572355|gb|EEX28918.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290922690|gb|EFD99644.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|310894272|gb|EFQ43352.1| DNA-binding response regulator CsrR [Lactobacillus crispatus
           CTV-05]
          Length = 238

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 12/175 (6%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+ +  +D  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 38  LEDALSQDFDAILLDLMLPDLNGLEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPIRVFSDGRDPEVQ----------GEV 146
            + KP    E+LAR+ A+ RR+K+  + ++ T   +     +D  ++          G+ 
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVKIEKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKA 157

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L +RE  +L  L+ N+   V++ Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 158 IDLTKREYNLLMTLIENKNNVVSRDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211


>gi|107099448|ref|ZP_01363366.1| hypothetical protein PaerPA_01000460 [Pseudomonas aeruginosa PACS2]
 gi|218889203|ref|YP_002438067.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa LESB58]
 gi|296386961|ref|ZP_06876460.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PAb1]
 gi|313111910|ref|ZP_07797700.1| two-component response regulator CreB [Pseudomonas aeruginosa
           39016]
 gi|218769426|emb|CAW25186.1| two-component response regulator CreB [Pseudomonas aeruginosa
           LESB58]
 gi|310884202|gb|EFQ42796.1| two-component response regulator CreB [Pseudomonas aeruginosa
           39016]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+       
Sbjct: 67  LRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAPRPAAL 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              A +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+ G+  
Sbjct: 127 EGAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL-GVAS 185

Query: 183 EAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYS 219
           EA  E  ++SHI  LR KLR  N+ G + + + R LGYS
Sbjct: 186 EAGYERNIDSHIKSLRAKLRQVNERG-EAIQTHRGLGYS 223


>gi|238788139|ref|ZP_04631934.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii
           ATCC 33641]
 gi|238723726|gb|EEQ15371.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii
           ATCC 33641]
          Length = 239

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 2/158 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   + + R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 63  LMLPGTDGISICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARV 122

Query: 113 AAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             I RR +    + ++T P+ +         QG +  L   E R+L+ L    G   ++ 
Sbjct: 123 KTILRRCQQQREQPSDTAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           Q+ + +Y  +   V +  ++SHI  LR+KL    G  P
Sbjct: 183 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKLEALDGKKP 219


>gi|83311994|ref|YP_422258.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82946835|dbj|BAE51699.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 8/188 (4%)

Query: 37  WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           +L +S R D   I+  L G  G  +++  R   A +  P++ +S    +   +    +G 
Sbjct: 38  FLATSERWDAMIIDRMLPGLDGLAIIQALRA--AGNTTPVLVLSALGKVDDRVRGLKAGG 95

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           DD + KP    E+LAR+ A+ RR+  +    R +   + +    R     G+   L  RE
Sbjct: 96  DDYLVKPYAFAELLARIEALSRRVSSTQPETRLKVEDLEMDLLARTVTRGGQEIDLQPRE 155

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
            R+LEYLM + G+ V +T +   ++   FD   + N+++ HIS+LR+K+        + +
Sbjct: 156 FRLLEYLMRHGGQVVTRTMLLENVWEYHFDP--QTNLIDVHISRLRQKVDKDFELPLIHT 213

Query: 213 KRFLGYSI 220
            R  GY++
Sbjct: 214 VRGAGYTL 221


>gi|152964988|ref|YP_001360772.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151359505|gb|ABS02508.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 226

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP++ ++   S    +D  D+G DD V KP     +LAR+ A  RR +V+    
Sbjct: 67  IRGWSRVPIVVLTARTSSADAVDALDAGADDYVTKPFAMDVLLARLRAAVRRGEVAGTGP 126

Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E G +R+    R     GE   L   E  +L+ L+ N G+ V +T++   ++G   
Sbjct: 127 GEVLEVGDLRIDLARRAVTRGGEPVKLTPTEWHLLQVLVTNAGRLVTQTRLLQEVWG-PA 185

Query: 183 EAVEENVVESHISKLRKKL 201
              E N +  ++ +LR+KL
Sbjct: 186 YGRETNYLRVYVGQLRRKL 204


>gi|239501396|ref|ZP_04660706.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB900]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
           +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + +  
Sbjct: 64  QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ + FD
Sbjct: 124 NELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNINFD 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N ++  + +LR K+        + + R LGY I
Sbjct: 184 --TDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 219


>gi|163761277|ref|ZP_02168352.1| phosphate regulon, two-component response regulator protein
           [Hoeflea phototrophica DFL-43]
 gi|162281434|gb|EDQ31730.1| phosphate regulon, two-component response regulator protein
           [Hoeflea phototrophica DFL-43]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 20/173 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA  +   +P+I ++        +    +G DD V KP    E+LARV A+ R
Sbjct: 64  IELCRRLRARPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELLARVRAMLR 123

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         LKV +   +    RV    RD ++    F       R+LE+LM++ G+  
Sbjct: 124 RASPEVISSLLKVGDIELDRETHRVRRRARDIKLGPTEF-------RLLEFLMSSPGRVY 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G  D  V+E  V+ H+ +LRK +      D + + R  GYSI+
Sbjct: 177 SRAQLLDGVWG-HDVYVDERTVDVHVGRLRKAVNLSGMRDIIRTVRGAGYSIE 228


>gi|159900447|ref|YP_001546694.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893486|gb|ABX06566.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 226

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 3/130 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
            DSG DD ++KP    E+LARV A+ RR    +S+    +G I +           +   
Sbjct: 91  LDSGADDYLSKPFAFEELLARVRALGRRFNSNLSSEELRSGEIVLDLRAHTARRANQQLD 150

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L   E  +LE L+ N  + +++ Q+   ++  ++  V+ ++V+ +IS LR+KL      D
Sbjct: 151 LTATEWNLLECLIRNSNQALSRQQLLDYVWS-YERDVQPSMVDVYISYLRRKLEQPTKRD 209

Query: 209 PVDSKRFLGY 218
           P+ + R +GY
Sbjct: 210 PIQTVRGVGY 219


>gi|160872789|ref|ZP_02062921.1| DNA-binding response regulator [Rickettsiella grylli]
 gi|159121588|gb|EDP46926.1| DNA-binding response regulator [Rickettsiella grylli]
          Length = 224

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 13/149 (8%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRR 118
           L + R +RA     P++ ++   S++  +   DSG DD  +K      E+ AR+ A+ RR
Sbjct: 60  LSVLREVRAAGITTPILILTARQSVEDRVKGLDSGADDYYSKYYFDLDELSARIRALQRR 119

Query: 119 LKVSNNRAETGPIRVFSDGR-DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              SNNRA   P+  + D   +P      ++G+V  L RRE  +L+ L+ N G  V++  
Sbjct: 120 --SSNNRAS--PLLTYRDIELNPSAFTVTLKGQVVNLSRREFSLLQKLLENAGHVVSRDS 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   +YG +++ ++ N +E H+  LRKKL
Sbjct: 176 LNQCLYG-WEDDIDSNTLEVHVHNLRKKL 203


>gi|30248361|ref|NP_840431.1| response regulator [Nitrosomonas europaea ATCC 19718]
 gi|30138247|emb|CAD84255.1| possible Response regulators consisting of a CheY-like receiver
           domain and a HTH DNA-binding [Nitrosomonas europaea ATCC
           19718]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 4/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           +P++ ++   S++ T+   D G DD + KP    E++AR+ A+ RR   +++   +   +
Sbjct: 73  LPVLVLTARGSMEDTIAGLDIGADDYMTKPFRLPELIARIRALIRRAHSITSTELQHDRL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            + +      +  +   L RRE  ILE L+    + V+K ++   + G +D+ +  N +E
Sbjct: 133 VLNTGSYTATLNDQPLLLTRREWTILETLLMASPRVVSKDKLLQNLTG-WDKNITPNAIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            H+S+LR K+    G   + + R +GY ID
Sbjct: 192 VHVSRLRAKIAP--GGIEIRTVRGIGYRID 219


>gi|330961382|gb|EGH61642.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G++ +E E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   ++  A   PI V     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRAGPTDGEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 10/150 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + IR  S+VP++ IS   S          G DD ++KP    E+ ARV A  RR  
Sbjct: 62  MELLKHIRETSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRAT 121

Query: 121 V---SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +   + ++    P+  F D          +V+G+  PL  +E  IL+ L+ N  +   K 
Sbjct: 122 LYAETESKPAEPPVIAFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTNHSRVFTKE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           QI+  I+   D    ENV+  HI +LR+K+
Sbjct: 182 QIYQLIWE-EDYYGNENVINVHIRRLREKI 210


>gi|289422465|ref|ZP_06424308.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
 gi|289157037|gb|EFD05659.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
          Length = 235

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 10/171 (5%)

Query: 40  SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
            S +E++  I   L   G    EL   I+    VP+I +S    +   +   D+G +D +
Sbjct: 45  QSRKEEIDIIIMDLFLPGIDGYELLPQIKDILDVPVIVVSAISDIVDKVKLLDAGANDYI 104

Query: 100 NKPIHHREILARVAAIYRRLKVS--NNRAETGP-------IRVFSDGRDPEVQGEVFPLP 150
            KP  ++E+LAR+    R  +VS  +N+AE          + +F +  D  V G+   L 
Sbjct: 105 TKPFDNKELLARIGVQARISQVSKLDNKAENMENVLRYRDLELFPETFDVFVCGKELILT 164

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + E +ILE  + N+ +  +K  I+  I+G      ++  +  HIS +RKK+
Sbjct: 165 KYEFKILELFLKNQKRIFSKQDIYEIIWGEIYTG-DDRTISVHISNIRKKI 214


>gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 227

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 17/205 (8%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQV-PLIGIS 79
           LEFE +    A+    A+E F  G  + +L           E+ R IR  + V P+I ++
Sbjct: 22  LEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLEVLRRIRLKNAVIPIILLT 81

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFS 135
              S+   +   D G  D + KP    E+LAR+ A  R   V     N+  +   + +  
Sbjct: 82  ARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNVVKEEENSSYQIADLYLDE 141

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
             R+ +    +  L  RE  +L +LM +  + + + QI + ++G FD   + NVV+ +I 
Sbjct: 142 KTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNVWG-FDYYGDTNVVDVYIR 200

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220
            LRKK+   +    V + R +GY +
Sbjct: 201 YLRKKVDCNVDVPLVHTVRGVGYVL 225


>gi|255036502|ref|YP_003087123.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254949258|gb|ACT93958.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 228

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           KG  V +  R+ +    +P+I ++ +  ++  ++  +SG DD + KP   RE+LAR+ A 
Sbjct: 59  KGYDVCQQLRVYK--PSLPIIMLTAFGEIEDKVEGLNSGADDYIVKPFDFRELLARIYAA 116

Query: 116 YRRLKVSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            R   + +       +R+         +     G+V  L  +E  +LEY + +RG+ V+K
Sbjct: 117 LRVSDLMHPETSDKILRIADLEMNLGTKQVRRAGQVIDLTAKEFALLEYFLLHRGRVVSK 176

Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             +   ++ L FD     NVVE +I+ LRKK+        + ++  +GY
Sbjct: 177 MDLAEHVWHLNFDPGT--NVVEVYINYLRKKVDKDFPTKLIHTRPGMGY 223


>gi|168186973|ref|ZP_02621608.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169295067|gb|EDS77200.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 227

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 19/227 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-----KG 57
           ++++D   + D  ++    DG  ++G        +L S A+E +      L+        
Sbjct: 6   LVVEDEISINDILVSALRSDGYIVKGV-------FLASEAKEALGLFNPDLVLLDINLPD 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E   +L R I     +P+I ++    +   +   + G DD + KP H +E+L RV    R
Sbjct: 59  ENGFDLCRYINKKCIIPIIMLTARNDIVDKVLGLELGADDYITKPFHIKEVLTRVKVAMR 118

Query: 118 RLKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R+    + +E         +++  +GR      +   L  +E  +LE+ + NR K   + 
Sbjct: 119 RVNKYKDSSEESFIDINNSVKINLEGRIVLKNNKEVKLKPKEYELLEFFVKNRNKVFCRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++   ++  FD   E   V+ H+ +LR KL +K     +D+   +GY
Sbjct: 179 ELLDKVWE-FDYDGEIRTVDVHVRRLRSKLNDKHEASIIDTVFGVGY 224


>gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104]
 gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22]
 gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG]
 gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis]
 gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104]
 gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22]
 gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG]
 gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137]
 gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017]
 gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027]
 gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141]
 gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244]
 gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012]
 gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031]
 gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043]
 gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312]
 gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645]
 gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302]
 gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341]
 gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342]
 gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346]
 gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B]
 gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630]
 gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A]
 gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62]
 gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV +I RR +
Sbjct: 61  MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQ 120

Query: 121 VSNNRA-----ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
           +   +      E GP+ +  D  + + ++G+   L   E  IL YL+A+   RV +  +I
Sbjct: 121 MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGIL-YLLASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
           F  ++   +  V    V  H+S LR K+    G + V    + +GY ID
Sbjct: 180 FERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|302381990|ref|YP_003817813.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192618|gb|ADL00190.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 226

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 103/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A +        GD G +++     E   +L  +   DV  ++  L  K + V  
Sbjct: 4   LLVEDDADLSRQLKMALGDAGYAVDHAADGEEAHFLGDTEPYDVVVLDLGLP-KIDGVSV 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLKV 121
           L R  R     P++ ++   +    +  FD+G DD + KP H  E +    A + R   +
Sbjct: 63  LERWRRDGKTTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSAGI 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           ++     G +R+        V GE   L   E R+L Y+M ++G+ +++T++   +Y   
Sbjct: 123 ASATLSCGGLRLDPKAARATVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYDQD 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + N +E  I +LRK    K+G D +++ R LGY +
Sbjct: 183 FDR--DSNTIEVFIGRLRK----KVGSDRIETVRGLGYRL 216


>gi|269102403|ref|ZP_06155100.1| putative transcriptional regulatory protein PhoP [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162301|gb|EEZ40797.1| putative transcriptional regulatory protein PhoP [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 224

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           ++P++ ++   + Q  +   ++G DD + KP    E++AR++A+ RR           G 
Sbjct: 72  RLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEELVARLSALVRRSAGFVKPEMTAGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           IRV    +   +  EV  L   E  +LEYLM +  + V+K ++   +Y   D+  + N +
Sbjct: 132 IRVDLLAKQVFINEEVLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE--DQEGDPNTI 189

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E  IS+LRKK       +P+ + R  GY
Sbjct: 190 EVMISRLRKKFTKTGQENPISTIRGQGY 217


>gi|256544847|ref|ZP_05472219.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
 gi|256399736|gb|EEU13341.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
          Length = 226

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ +S        +   D G DD + KP   RE+LARV A  RR +V
Sbjct: 62  EICQNIRIKSTIPILILSAKIDEFDKVKGLDLGADDYITKPFRPRELLARVNAQLRRSQV 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N       +   IR+++     E  G    L R E  +L +L  N  +  ++ Q++  I
Sbjct: 122 FNKENLEIIDLENIRIYTKEYKVEKDGRDLDLSRNEFELLIFLSKNPRQVFSREQLYERI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN 203
           +G FD   + N V   I++LR+K+ +
Sbjct: 182 WG-FDSYGDLNTVTVTINRLRQKIED 206


>gi|238758863|ref|ZP_04620036.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC
           35236]
 gi|238702971|gb|EEP95515.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC
           35236]
          Length = 239

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 2/158 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   + + R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 63  LMLPGSDGITICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARV 122

Query: 113 AAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             I RR   +  +A ++ P+ +         QG +  L   E R+L+ L    G   ++ 
Sbjct: 123 KTILRRCHQAREQATDSAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           Q+ + +Y  +   V +  ++SHI  LR+KL +  G  P
Sbjct: 183 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKLESLDGDKP 219


>gi|158321109|ref|YP_001513616.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141308|gb|ABW19620.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP+I IS        +   + G DD + KP     + A+V A+ RR        
Sbjct: 67  IRKVSKVPIIFISSTSDNMNIVMAMNMGGDDFIIKPFDLNVLTAKVQAMLRRTYDFSGQT 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E     +  +      +GE   L + + +IL+ LM N+G  V++  I S ++   D 
Sbjct: 127 HLLEHNEAILNINDNTLTYRGEKIELTKNDYKILQLLMENKGMVVSRDTIMSRLWET-DS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++EN +  +I++LRKKL     ++ + +K+ +GY +
Sbjct: 186 FIDENTLTVNITRLRKKLEAVGLYNFITTKKGIGYMV 222


>gi|126437395|ref|YP_001073086.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126237195|gb|ABO00596.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 233

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 15/190 (7%)

Query: 23  GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75
           G+ L GF+   +++  E L+S+     +  +A ++     VL+   ++ A     + VP+
Sbjct: 26  GLRLSGFDVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPI 131
             +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+   + GP+
Sbjct: 83  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSSATFSSETIQVGPL 142

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+
Sbjct: 143 EVDIPGRRARVNGADVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 201

Query: 192 SHISKLRKKL 201
             I  LR+KL
Sbjct: 202 VFIGYLRRKL 211


>gi|21230432|ref|NP_636349.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769574|ref|YP_244336.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992783|ref|YP_001904793.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21111993|gb|AAM40273.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574906|gb|AAY50316.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734543|emb|CAP52753.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 14/182 (7%)

Query: 33  EFEEWLQSSAREDVSAI-----EAFLIG---KGEKVLELPRIIRAHS---QVPLIGISDY 81
           EFE      ARE  +AI     +  L+     G   L+L R  R  S   ++P+I ++  
Sbjct: 26  EFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDLARRWRKESLTREIPIIMLTAR 85

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141
                 +   ++GVDD V KP   RE+LAR+ A+ RR +  +        R+  DG    
Sbjct: 86  GEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVGRLRIDGAAHR 145

Query: 142 VQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
           V     P+P    E R+L + M +  +   +TQ+   ++G     VEE  ++ HI +LRK
Sbjct: 146 VFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERTIDVHIRRLRK 204

Query: 200 KL 201
            L
Sbjct: 205 TL 206


>gi|148545612|ref|YP_001265714.1| DNA-binding response regulator CreB [Pseudomonas putida F1]
 gi|148509670|gb|ABQ76530.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 226

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 17/226 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE--GFNSLEFEEWLQSSAREDVSAIEAFLIGKGE- 58
            ++++D A + D  +     DG S E     S   ++  Q  A  D+  ++   IG  + 
Sbjct: 4   ILIVEDEAAIADTLVYALQADGHSTEWVTLGSAALDQQRQRPA--DLVILD---IGLPDI 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E  R +R  ++VP++ +S        +   + G DD V KP   RE+ ARV AI +R
Sbjct: 59  SGFETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKR 118

Query: 119 LKVSNNRAE-TGPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +     RAE  G   +F  D    ++  + +   L R E R+L+ L+    +  ++ Q+ 
Sbjct: 119 MA---PRAEVVGETTLFHLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLL 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            A+ G+  +   E  ++SHI  LR KLR   G  +P+ + R LGYS
Sbjct: 176 DAL-GVASDVGYERTIDSHIKSLRAKLRQVAGDAEPIQTHRGLGYS 220


>gi|331092423|ref|ZP_08341248.1| hypothetical protein HMPREF9477_01891 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401266|gb|EGG80855.1| hypothetical protein HMPREF9477_01891 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 226

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D + +++  +      G+   GF   +  ++ ++ A E    +   ++  GE  
Sbjct: 1   MIYCVEDDSNIRELVVYTLESTGMKARGFE--DGRKFTEALAFETPELVLLDIMLPGEDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ + +R +++   +P+I ++   S    +   D+G DD + KP    E+++R+ A+ R
Sbjct: 59  IEILKKLRNNAKTKNIPVIMVTAKGSEYDKVVGLDTGADDYITKPFGMMELVSRIKAVLR 118

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   +    + + G + +  +    +V G+   L  +E  +LE LM NR   + + ++  
Sbjct: 119 RTTREKEETKYQIGNLVIDVEKHKVKVDGKSVTLTLKEFELLEKLMKNRHIVLTRDRLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D + E   V+ H+  LR+KL +    + +++ R +GY I
Sbjct: 179 EIWG-YDFSGETRTVDVHVRTLRQKLGD--AGELIETVRGVGYRI 220


>gi|283853868|ref|ZP_06371084.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283570743|gb|EFC18787.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 251

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 8/177 (4%)

Query: 46  VSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           V+ I+  L G  G KV+E  R  R     P+I +S   S++  +   ++G DD ++KP  
Sbjct: 75  VAVIDVMLPGMDGLKVIEELR--RRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFS 132

Query: 105 HREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
             E+LARV A+ RR   ++   R   G + +    RD         L  RE  +LEY M 
Sbjct: 133 FSELLARVQALIRRSTSASEPTRLSVGELSMNLLTRDVHRGETAVQLQPREFALLEYFMR 192

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           N GK ++KT I   ++   FD   + N+V+  + +LR K+        + + R +GY
Sbjct: 193 NPGKVLSKTMIMEHVWDYHFDP--QTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGY 247


>gi|222082681|ref|YP_002542046.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727360|gb|ACM30449.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 220

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 10/151 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P+I ++     +  +D  D+G DD + KP    E+LARV A+ RR    S+     G +
Sbjct: 70  MPVIILTARDGWRDKVDGMDAGADDYLTKPFRMEELLARVRALMRRAAGQSSPILSNGVL 129

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENV 189
            + +  R    +G+   +   E R+L YL+ N G  ++++QI  +IY   DE  E   N 
Sbjct: 130 ELDTRQRTVSFRGQPVQVTALEYRLLAYLLHNAGTVLSRSQIADSIY---DEETELLSNA 186

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E  +++LR+K    +    ++++R  GY I
Sbjct: 187 LEVVVARLRRKFDGTV----IETRRGQGYLI 213


>gi|163741992|ref|ZP_02149381.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161384713|gb|EDQ09093.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 230

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 18/198 (9%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLELPRII 67
           A+ K GY  LF  DG      N+L+       ++R+ +  +    IG  E   LE+ R I
Sbjct: 21  AVEKAGYETLFASDG-----LNALK-------ASRQQLPDLIVLDIGLPEMDGLEVCREI 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S VP++ ++        +   + G DD + KP   RE++AR+ AI +R   +    E
Sbjct: 69  RKSSDVPILFLTARDDEIDRIVGLEIGADDYLTKPFSPRELVARIKAILKRSTPTPAPPE 128

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G +++ ++    +  G    L   E R+L  L+A     +++TQ+   +YG ++ 
Sbjct: 129 AVLEQGSLQLNAERHLCQFGGTPVSLTGSEFRLLATLLARPDHVISRTQLVDTLYG-YNI 187

Query: 184 AVEENVVESHISKLRKKL 201
            V +  ++SHI  +R KL
Sbjct: 188 HVSDRTIDSHIRNIRAKL 205


>gi|92117426|ref|YP_577155.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91800320|gb|ABE62695.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 221

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 8/149 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P++ ++   S    +D  D+G DD + KP    E+LAR+ +I RR     +   T   
Sbjct: 72  HMPVLVLTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSAGHGSSVMTAG- 130

Query: 132 RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +  D R  +V  +G    L   E R++ +L+ NRG+ V++ ++   IYG  +E  + N 
Sbjct: 131 EITLDERQMKVTRRGVPIALSPLEYRLIAHLLRNRGRVVSQQELDENIYGHGEEH-DSNT 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +E  + ++RK    KLG D ++++R  GY
Sbjct: 190 LEVLVGRVRK----KLGADVIETRRGFGY 214


>gi|83718618|ref|YP_441229.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83652443|gb|ABC36506.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 241

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 81  IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 139

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 140 --QSGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 197

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 198 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 237


>gi|332759462|gb|EGJ89770.1| sensor protein phoQ [Shigella flexneri 2747-71]
          Length = 709

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 2/134 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   +++      P 
Sbjct: 73  LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 133 QVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191

Query: 192 SHISKLRKKLRNKL 205
             + +LRKK R+ +
Sbjct: 192 VLMGRLRKKFRHNI 205


>gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 243

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 13/172 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R  RA  +  P+I IS   S    +   + G DD + KP    E++AR
Sbjct: 56  LMLPGVDGLEICRRARAMERYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVAR 115

Query: 112 VAAIYRRLKV--SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164
           V A+ RR++    + R+E G + V     DP      V G    L  RE  +L +   + 
Sbjct: 116 VKALLRRVEALSRDTRSEAGRVDVGGLTLDPLTREAAVDGAAIDLTPREFDLLYHFARHP 175

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           GK  ++T + +A++G   E   E+ V +HI++LR K+      DP    R L
Sbjct: 176 GKAFSRTDLLNAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAQPARIL 222


>gi|302336008|ref|YP_003801215.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301319848|gb|ADK68335.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 222

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 26/231 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDG---VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            V+++D A ++     L G  G   V+   F+SL  E+ L++S    +  +    +    
Sbjct: 4   IVVVEDDAPLRSSLCELLGRSGYEVVTPHVFDSL-VEDVLEASPDLVLLDLGLPGLDGTT 62

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              EL    RAHS VP++ ++   +    +     G DD V+KP     +LA V A+ RR
Sbjct: 63  VCREL----RAHSGVPIMVVTSRSTEMDEVMCMTFGADDFVSKPYSSYVLLAHVEALLRR 118

Query: 119 L-KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +   S +    G +       R  ++GRD E       L + E RIL  LM N G  V +
Sbjct: 119 VGGASGSTLACGGLSLDVARSRALANGRDVE-------LTKNELRILSLLMRNSGVIVPR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             I   ++   D  V++N +  ++++LR+ L +K+G    + + R  GYS+
Sbjct: 172 ETIMCELWD-SDTFVDDNTLTVNVNRLRQTL-SKIGCGQLLVTHRGQGYSV 220


>gi|195952759|ref|YP_002121049.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932371|gb|ACG57071.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 233

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 4/130 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P + ++    +   L  F+ G DD + KP   +E+LAR+ AI RR + + + AE    
Sbjct: 72  KTPFLILTAKDGINDKLTAFNIGADDYLTKPFDMKELLARIEAIVRRTRQTGS-AELICN 130

Query: 132 RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           ++  D  +  +Q  G+V P  +++  ILE L++N G+ V   Q+ S  +G+ DE      
Sbjct: 131 KLVLDTSNFTIQIDGKVIPATKKQFLILEKLISNVGRVVTVEQLLSYAWGI-DEEPSSFS 189

Query: 190 VESHISKLRK 199
           + SHI  +R+
Sbjct: 190 LRSHIRTIRR 199


>gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
 gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
          Length = 239

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----------GPIRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR+  + N  E           G + ++ D  +  ++
Sbjct: 96  GADDYMTKPFSPREVVARVRAILRRVGHAQNNHEDNSRSTSTLSFGNVEIYPDNYEVYLK 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR- 202
           G+   L  +E  +L YL  ++G+ + + Q+ +A++  ++   +  +V+ HIS LR+K+  
Sbjct: 156 GQPLELTPKEFELLLYLANHKGRVLTRDQLLNAVWN-YEFVGDTRIVDVHISHLREKIEP 214

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 215 NTKKPIYIKTIRGLGYKLE 233


>gi|330502429|ref|YP_004379298.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328916715|gb|AEB57546.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 230

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 2/142 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+      +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  + 
Sbjct: 70  LARLRDRGQTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLG 129

Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             + +     V+  G R   ++GE   L  RE+ +LE ++A  G+ ++K Q+ + ++GL 
Sbjct: 130 GEQLQRCGDLVYDLGARRFSLEGEALSLTAREQAVLEAMIARPGRVMSKEQLAAQVFGL- 188

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           DE    + +E +I +LRKKL  
Sbjct: 189 DEDASPDAIEIYIHRLRKKLEG 210


>gi|238917107|ref|YP_002930624.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238872467|gb|ACR72177.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S+VP+I ++        L  F+ G D+ + KP   + + ARV AI RR   
Sbjct: 65  EVCRQIRKDSKVPIIMLTAKGEEMDELQGFECGADEYIAKPFSPKILTARVDAIIRRAYG 124

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++        +  D      ++ GE   L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 VDSNEIIEIGGITIDKAAHIVKIDGEEIELSYKEFELLTYFVENKGLALSREKILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLRKK+  K
Sbjct: 185 -YDYYGDARTIDTHVKKLRKKMGEK 208


>gi|254426228|ref|ZP_05039945.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188651|gb|EDX83616.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 15/213 (7%)

Query: 1   MFVLI--DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKG 57
           M +LI  DD A ++   IAL  + G  ++G  + +  +WL S    D+  ++  L +  G
Sbjct: 1   MIILIVEDDPAQLRPLCIAL-SESGHLVDGVENAQEAQWLVSHKDYDLLILDWMLPVLSG 59

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAA 114
             + +  R +   + V ++   D     TT D     D+G DD + KP+   E+LARV A
Sbjct: 60  VSLCQHYRTLGKIAPVMMLTAKD-----TTADKVVGLDAGADDYLVKPVDIPELLARVRA 114

Query: 115 IYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR  +   +R   G + + +     E Q     L  RE  ++EYLM   G+ + +  I
Sbjct: 115 LGRRSPQWHGDRLSLGDLYLNTSTLTLERQKSCIRLSSREFHLMEYLMRRSGQVITRDNI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
              ++ ++    E N V + I +LR++L N+LG
Sbjct: 175 EQTLW-IWGTEPESNAVTALIWRLRQRL-NELG 205


>gi|182419284|ref|ZP_02950537.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237668433|ref|ZP_04528417.1| two component transcriptional regulator, winged helix family
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376924|gb|EDT74495.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237656781|gb|EEP54337.1| two component transcriptional regulator, winged helix family
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 222

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 86/159 (54%), Gaps = 5/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR ++ +P+I ++   S    +   + G DD + KP + + +LAR+ ++ RR  V 
Sbjct: 63  ICREIRKNNNIPIIIVTSRDSDMDEIMSINLGADDFITKPYNTQVLLARIGSLLRRTAVG 122

Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           N  +  E   +++  +  +   +     L + E +IL  L+ N+   V++  +   ++  
Sbjct: 123 NVQDILEHKGLKLNINKGEVSFKDRSIDLSKNEFKILSCLIKNKETIVSREDLMDYLWN- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            D  +++N +  ++++LRKKL + LGF + +++KR LGY
Sbjct: 182 SDLFIDDNTLSVNVTRLRKKL-DDLGFKNGIETKRGLGY 219


>gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus ATCC 14579]
 gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus ATCC 14579]
 gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 239

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AET--------GPIRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR K+      AE           +++  +  +   Q
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVAEAPDEDSITIAELKILPEFYEAYFQ 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202
           G    L  +E  +L YL  N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233


>gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-A 126
           R +  +P++ ++    L   +  F+ G DD + KP    E+L R+ A+ RR KV+ +R  
Sbjct: 69  RYYEDMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALLRRYKVAASRII 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +           E F +P +E  +L  L +  GK +++ ++   ++GL D    
Sbjct: 129 NIGNLVMDKSSYTVISNNEQFDIPMKEFELLFMLGSYPGKTLSRDRLIEEVWGL-DFEGN 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  ++ HI++LR++ ++ +    + + R LGY ++
Sbjct: 188 ERTLDVHINRLRERFQSDIYKFKITTIRGLGYRVE 222


>gi|75758377|ref|ZP_00738500.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228904788|ref|ZP_04068842.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
 gi|74494103|gb|EAO57196.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228854802|gb|EEM99406.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
          Length = 235

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ R++  +  VP + ++        +   D G +D + KP     +LAR+  + RR  
Sbjct: 70  LEVARLVNKNKTVPYLLLTSRNEPLDIMQGLDMGAEDYITKPYDLTVLLARIRTVLRRTS 129

Query: 120 -KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K S+N    + G I +        V G+   L  +   +L Y + ++GK ++K +++  
Sbjct: 130 SKESSNGGVTQCGNIEINLLTHKVTVDGKQVHLTNQLFELLHYFITHKGKIISKEELYKN 189

Query: 177 IYGLFD--EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+G +D  E  E N +E +I    ++LRN +G D + + R  GY ++
Sbjct: 190 IWG-YDPSELQETNTLEVNI----RRLRNSIGIDIIKTVRGKGYVLE 231


>gi|255281631|ref|ZP_05346186.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
 gi|255267698|gb|EET60903.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
          Length = 227

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149
           F +G DD + KP++  E+L R+ A+ RR +++++R  T G   +  D      +GE   L
Sbjct: 92  FLAGTDDYMTKPVNEEELLLRIGALLRRARIASDRQLTVGSTTLNFDSLTVSCRGETQLL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P++E  +L  L++       + Q+   I+G   ++ +   +  HI++LRK+  N   F  
Sbjct: 152 PQKEFFLLYKLLSFPNHIFTRLQLMEEIWGPCTQSTDAT-ISVHINRLRKRFENSPDFSI 210

Query: 210 VDSKRFLGY 218
           + + R LGY
Sbjct: 211 I-TIRGLGY 218


>gi|261409935|ref|YP_003246176.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286398|gb|ACX68369.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 233

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 13/162 (8%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R+IR+HS VP+I +S  D+P+    +     G DD + KP H   ++A++ A  RR+   
Sbjct: 69  RMIRSHSNVPIIFLSSRDHPT--DMVMSMQLGADDFIQKPFHFDVLIAKIQATLRRVYNY 126

Query: 123 NN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           N      R   G    F        QG    L + E  IL+ LM  + + V++  +  ++
Sbjct: 127 NTERTELRTWRGATVEFGKNTISSPQGTA-ELTKNEMFILKILMERKNQIVSREDLIKSL 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +   +  V +N +  ++++LRKKL   LG DP +++K   GY
Sbjct: 186 WD-NEHFVSDNTLTVNVNRLRKKLE-PLGLDPYIETKVGQGY 225


>gi|325922699|ref|ZP_08184439.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas gardneri ATCC 19865]
 gi|325546816|gb|EGD17930.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas gardneri ATCC 19865]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 14/182 (7%)

Query: 33  EFEEWLQSSAREDVSAI-----EAFLIG---KGEKVLELPRIIRAHS---QVPLIGISDY 81
           EFE      ARE  +AI     +  L+     G   L+L R  R  S   ++P+I ++  
Sbjct: 26  EFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDLARRWRKESLTREIPIIMLTAR 85

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141
                 +   ++GVDD V KP   RE+LAR+ A+ RR +  +        R+  DG    
Sbjct: 86  GEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVGRLRIDGAAHR 145

Query: 142 VQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
           V     P+P    E R+L + M +  +   +TQ+   ++G     VEE  ++ HI +LRK
Sbjct: 146 VFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERTIDVHIRRLRK 204

Query: 200 KL 201
            L
Sbjct: 205 TL 206


>gi|256826808|ref|YP_003150767.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582951|gb|ACU94085.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 226

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           R  + +P++ ++    ++  ++  D+G DD + KP    E+LAR+ ++ RR   V     
Sbjct: 68  REGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTGSVEFETL 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               I +  D  + E +G+   L ++E  I+  LMA   +  +K  + S ++G +D    
Sbjct: 128 SFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG-YDSTAA 186

Query: 187 ENVVESHISKLRKKL 201
           +N VE+++S LRKKL
Sbjct: 187 DNNVEAYVSFLRKKL 201


>gi|229182985|ref|ZP_04310217.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228600442|gb|EEK58030.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 213

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 50  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 106

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N R +     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 107 TNQRTQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 166

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 167 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 208


>gi|219523859|gb|ACL14892.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Hartford]
          Length = 215

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 5/214 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 63  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
             E  E + ++  + +LRKK++ +   D + + R
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVR 215


>gi|149374419|ref|ZP_01892193.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
 gi|149361122|gb|EDM49572.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
          Length = 241

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 8/155 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VLE  R  + + Q+P++ ++   S    +   D+G DD + KP    E++AR+ A+ 
Sbjct: 59  GIEVLESVRA-QLNWQIPVVFLTQRDSETDIVRALDAGADDYLAKPAREAELVARINALA 117

Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR          + GP  + +  R   + G V  L  ++  +  +L  N+G+ + +  + 
Sbjct: 118 RRTSPDAEKESLQYGPFEINTQLRTIALHGNVLTLTDKDFDLTLFLFQNQGRLLTREMLL 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             ++GL  + +    V++H+S+LR+    +LG +P
Sbjct: 178 ERVWGLAKD-INTRTVDTHMSRLRR----RLGLNP 207


>gi|170720246|ref|YP_001747934.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758249|gb|ACA71565.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPI 131
           +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  +   R +  GP+
Sbjct: 73  LPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLGGERQQRCGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
               D R   +  +   L  RE+ +LE L+A  G+ ++K Q+ + ++GL DE    + +E
Sbjct: 133 VYDLDTRRFALGEDNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFGL-DEEASPDAIE 191

Query: 192 SHISKLRKKL 201
            +I +LRKKL
Sbjct: 192 IYIHRLRKKL 201


>gi|317056581|ref|YP_004105048.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448850|gb|ADU22414.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           I R ++ +P+I +S    L      F  G+DD + KP+   E+  RV A+ RR  ++  +
Sbjct: 67  IRRLNANIPIIFLSARYDLSAKDKGFRLGIDDYMVKPVELAELDMRVRALLRRANIAEAK 126

Query: 126 AET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             T G + + SD     V  E  PL  RE  IL  L++   K  ++ Q+    +G+ D  
Sbjct: 127 KLTVGDLTLDSDAMTGTVNSEEMPLSTREFNILFKLLSYPNKTFSRAQLMDEFWGV-DSD 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                V+ +I++LR K     GF+ + + R +GY
Sbjct: 186 ASLRSVDVYITRLRDKTAACTGFE-IKTIRGIGY 218


>gi|293609501|ref|ZP_06691803.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827953|gb|EFF86316.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
           +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + +  
Sbjct: 64  QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ + FD
Sbjct: 124 NELSISDLKMDVVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNINFD 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N ++  + +LR K+        + + R LGY I
Sbjct: 184 --TDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 219


>gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 239

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGP---------IRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR K+    +    P         +++  +  +   Q
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVSEAPDEESIIIAELKILPEFYEAYFQ 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202
           G    L  +E  +L YL  N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233


>gi|218699471|ref|YP_002407100.1| transcriptional regulatory protein YedW [Escherichia coli IAI39]
 gi|218369457|emb|CAR17222.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli IAI39]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 42  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +++ S  +          L R+E ++L  L +
Sbjct: 102 FSFSELLARVRAQLRQHYTLNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLAS 161

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             G+ + +T I S I+G+ FD   + N V+  I +LR K+ +      + + R +GYS
Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217


>gi|218441450|ref|YP_002379779.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174178|gb|ACK72911.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 614

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 2/150 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           Q P+I ++   S    +   D+G DD + KP++   ++AR+ A++RR K +S++      
Sbjct: 72  QEPIILLTARDSSTDQIIGLDAGADDYIVKPVNLETLMARIRALFRRKKNISSSVIHWEN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           ++V  +  +    G    L  +E  +LE  + N  +  ++  I   ++ L D   EE  V
Sbjct: 132 LQVNLNNCEVNSHGNSIHLTAKEYSLLELFLMNSQRIFSRRVILEKLWDLADSPGEE-TV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +HI  LR+KL+     DP+++   LGY +
Sbjct: 191 STHIKCLRQKLKAAGVPDPIETVYGLGYRL 220


>gi|196047153|ref|ZP_03114370.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022023|gb|EDX60713.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N R +     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQRTQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220


>gi|154503427|ref|ZP_02040487.1| hypothetical protein RUMGNA_01251 [Ruminococcus gnavus ATCC 29149]
 gi|153796094|gb|EDN78514.1| hypothetical protein RUMGNA_01251 [Ruminococcus gnavus ATCC 29149]
          Length = 219

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 3/153 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR +   P++ ++     ++ ++   SG DD + KP    E+ ARVAA  RR       A
Sbjct: 66  IRRYVDCPILFLTAKAEEKSIMEGLGSGGDDYICKPFGIGELRARVAAHLRREAREKTHA 125

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E   IR    G+  +V  E  PL + E  I E L  N G+  +K +IF +++G ++   
Sbjct: 126 VEISGIRFDLAGKSVQVGEEKIPLTKSEYEISELLALNHGQVFSKEKIFESVFG-YERES 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + + +  H+  +R K   + G   + +   +GY
Sbjct: 185 DSSAITEHVKNIRAKF-ARYGKKNIQTVWGIGY 216


>gi|149926102|ref|ZP_01914365.1| DNA-binding response regulator [Limnobacter sp. MED105]
 gi|149825390|gb|EDM84601.1| DNA-binding response regulator [Limnobacter sp. MED105]
          Length = 222

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 31/220 (14%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L K GY A +  +G   E    +E           D+  ++  L GK    L++ +  
Sbjct: 18  KQLGKAGYAADWVQNGNEAEAQGCIE---------PYDLVVLDLGLPGKSG--LDVLKGW 66

Query: 68  RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           RA   ++P+I ++   + Q  ++ F++G DD V KP    E+LAR+ A+ +R        
Sbjct: 67  RAQGLKLPVIVLTARGTWQEKVEGFNAGADDYVPKPFQTEELLARIGAVLKRAVGTAPES 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           LK      +     V  D  +P+       L   E R+L Y M + G+ ++KT++   +Y
Sbjct: 127 LKAKGLLLDETLQTVKVDNEEPQ------QLTGTEFRLLRYFMLHPGQPLSKTRLTEHVY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             +D   + NV+E ++++LRK    K+G   + +++  GY
Sbjct: 181 E-YDADKDSNVMEVYVNRLRK----KIGAQWIQTRKGQGY 215


>gi|66048256|ref|YP_238097.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|71734112|ref|YP_277191.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257485715|ref|ZP_05639756.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628101|ref|ZP_06461055.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651289|ref|ZP_06482632.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289677407|ref|ZP_06498297.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. syringae FF5]
 gi|298489418|ref|ZP_07007429.1| Phosphate regulon transcriptional regulatory protein phoB
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302187091|ref|ZP_07263764.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. syringae 642]
 gi|63258963|gb|AAY40059.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|71554665|gb|AAZ33876.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298155992|gb|EFH97101.1| Phosphate regulon transcriptional regulatory protein phoB
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|320321732|gb|EFW77830.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331482|gb|EFW87422.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330870966|gb|EGH05675.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330890623|gb|EGH23284.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. mori str. 301020]
 gi|330937451|gb|EGH41417.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330952444|gb|EGH52704.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae Cit 7]
 gi|330970220|gb|EGH70286.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330986909|gb|EGH85012.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011999|gb|EGH92055.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G++ +E E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   ++  A   PI V     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRAGPTDGEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|238799012|ref|ZP_04642473.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC
           43969]
 gi|238717153|gb|EEQ09008.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC
           43969]
          Length = 241

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 2/158 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   + + R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 65  LMLPGSDGITICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARV 124

Query: 113 AAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             I RR      + +E+ P+ +         QG +  L   E R+L+ L    G   ++ 
Sbjct: 125 KTILRRCHQQREQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           Q+ + +Y  +   V +  ++SHI  LR+KL +  G  P
Sbjct: 185 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKLESLDGEKP 221


>gi|15595660|ref|NP_249154.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PAO1]
 gi|254243559|ref|ZP_04936881.1| two-component response regulator CreB [Pseudomonas aeruginosa 2192]
 gi|9946324|gb|AAG03852.1|AE004484_4 two-component response regulator CreB [Pseudomonas aeruginosa PAO1]
 gi|126196937|gb|EAZ61000.1| two-component response regulator CreB [Pseudomonas aeruginosa 2192]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+       
Sbjct: 67  LRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAPRPAAL 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              A +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+ G+  
Sbjct: 127 EEAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL-GVAS 185

Query: 183 EAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYS 219
           EA  E  ++SHI  LR KLR  N+ G + + + R LGYS
Sbjct: 186 EAGYERNIDSHIKSLRAKLRQVNERG-EAIQTHRGLGYS 223


>gi|325262406|ref|ZP_08129143.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032238|gb|EGB93516.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 272

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 101/233 (43%), Gaps = 30/233 (12%)

Query: 14  GYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKV------LELP-- 64
           GY  L  DD   L   + LE + E      R+    IEA  I + EKV      + +P  
Sbjct: 42  GYTILAADDEAEL--LDVLELYLERENIGIRKAKDGIEAMEIFRSEKVHLVLLDIMMPGL 99

Query: 65  ------RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
                 R IR  S++P I ++        +   + G DD + KP +  E++AR+ A  RR
Sbjct: 100 DGYAVLRKIRETSRIPAIMLTAKSEDYDKILGLELGADDYITKPYNPLEVVARIKAQLRR 159

Query: 119 LKVSNNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
               + R ETG          +++  +  + E+ G    L   E +IL   M   G+   
Sbjct: 160 --NYDYREETGQNREVLRLRGLQLCVEEGNVELDGRAVELTSTEFKILRLFMGQPGRIFT 217

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           K QIF  ++    E  ++N V  HIS LR KL    G  P + + + LGY I+
Sbjct: 218 KQQIFENVWEDSYEG-DDNTVMVHISNLRGKLEQSGGQPPQIKTVKGLGYKIE 269


>gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
           YIT 12067]
          Length = 234

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 11/158 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S +P+I ++        +   + G DD + KP + RE++ARV A+ RR  
Sbjct: 65  IEVCKQVRKMSDLPIIMVTAKDDDDDRIAGLEIGADDYITKPFNSREVVARVKAVLRRAG 124

Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + E   I      +  D       G       +E  +L  L +N GK  ++ Q+  
Sbjct: 125 TQEKKGEVSRITYPGLIIDMDQYQVTAFGNKMTFTTKEMELLWCLASNPGKAFSRNQLLE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            I+G +    +   V++HI ++R+KL       P DSK
Sbjct: 185 TIWG-YSYYGDTRTVDTHIKRIRQKLNI-----PPDSK 216


>gi|310658906|ref|YP_003936627.1| DNA-binding response regulator in two-component system with yedv
           [Clostridium sticklandii DSM 519]
 gi|308825684|emb|CBH21722.1| DNA-binding response regulator in two-component system with YedV
           [Clostridium sticklandii]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 2/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++   + + P++ ++    +   +   + G DD + KP   +E+LAR+ A+ RR +  
Sbjct: 63  LSKLREKNCKAPILMLTAKSHVDDKVTGLELGADDYLTKPFEMKELLARIKALLRRPQNF 122

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           N +  E G + +  D        +   L ++E + +E L+ N  + ++K  I   I+G +
Sbjct: 123 NADILEFGDMYLNRDTCQIICNNQQVVLNKKEFQTMELLILNSKQILSKDLIMDKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   E NVV  +IS LRKKL        + S R LGY I+
Sbjct: 182 ESDAEINVVWVNISSLRKKLAKLDSKVTIASIRGLGYKIE 221


>gi|295110799|emb|CBL24752.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 221

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNR 125
           I+     P+I +S   S    +    SG DD + KP   RE++ARV  A+ R LK  +N 
Sbjct: 66  IKNIITCPVIFLSAKSSEGAKVKGLMSGADDYITKPFSIRELVARVKVALRRNLKNGSNG 125

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                +    D    ++      L + E RI + L+ N GK  +K +++  +Y L D   
Sbjct: 126 ILINGLVFNQDSNSIKLDNGEILLTKNEFRICKILVQNSGKIFSKDELYEYLYDL-DANA 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   I  +RKK +  LG DP+ +   +GY  D
Sbjct: 185 QLRTITEFIYSIRKKFKT-LGLDPIKTIWGIGYKWD 219


>gi|294340536|emb|CAZ88920.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------V 121
           ++ S +P++ ++   +L+  +   D G DD + KP    E+LAR+ A+ RR        +
Sbjct: 68  QSGSNLPILILAARDALEDRVRGLDLGADDYLVKPFESAELLARIRAVARRQGGQAQPVL 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN   E  P+      R+   QG+   L  RE  +L  L+   G  ++++++   IYG +
Sbjct: 128 SNGVLELDPV-----SREVRFQGQTQRLTAREYALLHALLLRPGAILSRSELEDRIYG-W 181

Query: 182 DEAVEENVVESHISKLRKKL 201
           +E VE N VE  I  LRKKL
Sbjct: 182 NEEVESNAVEFLIHSLRKKL 201


>gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
 gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
          Length = 238

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F       E   + + EE L   + E+   +   L+    + L
Sbjct: 4   ILVVDDEKPISD--IVKFSLSKEGFEVVTAFDGEEGLAVFSAENPDLVILDLMLPKIEGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++   S    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 62  EVCREIRKTSNVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQHI 121

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S N    G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 SPTEPDEEKSANEIVLGSLIIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY I
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYI 229


>gi|253988926|ref|YP_003040282.1| two-component response regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780376|emb|CAQ83537.1| two-component response regulator [Photorhabdus asymbiotica]
          Length = 222

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +    +P++ ++    +   +   +SG DD + KP   +E+ AR+ A+ RR    
Sbjct: 63  LVRLRKRGQNLPVLLLTAKADVADRVKGLNSGADDYLTKPFDLQELEARIRALLRRSAGI 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                T    V+ D     + GE   L  RE  +L  L   RG+ V+K Q+F  ++ L D
Sbjct: 123 PQEILTFGSLVYQDEGYFTLNGEPLALTPRELSVLTTLFHRRGRPVSKQQLFEQVFALSD 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           EA  ++ +E ++ ++RKKL    G   + + R LGY ++  
Sbjct: 183 EANPQS-IELYVHRVRKKLSGS-GVG-ISTLRGLGYRLECQ 220


>gi|253573665|ref|ZP_04851008.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847193|gb|EES75198.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 226

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R +  +PL+ ++     +  +  F+ G DD + KP    E++ARV A+ +R +V
Sbjct: 63  DLCRELRRYYDMPLLMLTAKGETRQVVKGFELGTDDYLVKPFEPAELVARVKALLKRYQV 122

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S ++  T G +R+     + E       LP +E  +L  L +  G+ + + Q+   I+G 
Sbjct: 123 SISQTVTIGALRMNRKTFEVESGESSITLPLKEFELLFKLGSYAGRTLTREQLIEEIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +D    E  ++ HI++LR++      GF  + + R LGY ++
Sbjct: 182 YDFEGNERTLDVHINRLRERFPEETFGF-KIRTIRGLGYRLE 222


>gi|163940843|ref|YP_001645727.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863040|gb|ABY44099.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 228

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 66/148 (44%), Gaps = 7/148 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +      S
Sbjct: 64  VCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYSS 123

Query: 123 NNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                T        I V    R   V GE   +   E  IL Y M N+G  +++ Q+ + 
Sbjct: 124 TINVSTADTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYFMQNQGIVISREQLITK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           I+G ++ A ++  V SHI  LR KL  K
Sbjct: 184 IWG-YEFAGDDRTVNSHIRNLRHKLGGK 210


>gi|330445663|ref|ZP_08309315.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489854|dbj|GAA03812.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 224

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           ++P++ ++   + Q  +   ++G DD + KP    E++AR++A+ RR           G 
Sbjct: 72  RLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSAGFVKPEMTAGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           IRV    +   VQ  +  L   E  +LEYLM +  + V+K ++   +Y   D+  + N +
Sbjct: 132 IRVDLLAKQVYVQESLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE--DQEGDPNTI 189

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E  IS+LRKK       +P+ + R  GY
Sbjct: 190 EVMISRLRKKFTKTGQDNPISTIRGQGY 217


>gi|313898465|ref|ZP_07832002.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956847|gb|EFR38478.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 15/208 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   + D       ++G  +  F +S +  E+++++ R D++ ++  +        
Sbjct: 6   LVLDDEKEIADLVALYLNNEGYEVHKFYDSKDALEYMKNN-RVDLALLDVMMPEISG--F 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR     P+I ++        +     G DD + KP +  E++ARV A  RR K 
Sbjct: 63  EICRIIREKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122

Query: 122 SNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N   E   +  F      +D     +  EV  L   E  IL YL  NRG+ +   ++F 
Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNRGRVITSEELFE 182

Query: 176 AIY--GLFDEAVEENVVESHISKLRKKL 201
           A++    FD     N V  HI +LR+K+
Sbjct: 183 AVWKKKYFD---SNNTVMVHIRRLREKM 207


>gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
 gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 628

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 110/227 (48%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSA-IEAFLIGKGEK 59
            +L++D   + D  +A+       ++  N   +  E++QSS+ + V   IE  L+     
Sbjct: 3   ILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSYDLVLLDIELPLLDG--- 59

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + L   +R+H+ QVP++ ++   + Q  +   D+G DD + KP+   E+ AR+ A+ RR
Sbjct: 60  -ISLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRR 118

Query: 119 LKVSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +   T    V  +   D    G+   +  +E  +LE LM +R +  +  +I   +
Sbjct: 119 SSEGTSSVFTYEKMVLDTSTCDVTYNGKPIKVTPKEYGLLELLMGDRQRTYSIDKILDKL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223
           +  FD+    N V +HI  LR+KL+    G + +++   LGY ++ N
Sbjct: 179 WT-FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224


>gi|238917580|ref|YP_002931097.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238872940|gb|ACR72650.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 220

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   +  +  P  + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD    ++ + +HI  +R K  +   +D +  K   G    W
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD---YDYMPIKTVWGIGYKW 218


>gi|166710916|ref|ZP_02242123.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 14/182 (7%)

Query: 33  EFEEWLQSSAREDVSAIEAFL--------IGKGEKVLELPRIIRAHS---QVPLIGISDY 81
           EFE      ARE  +AI   L        +  G   L+L R  R      ++P+I ++  
Sbjct: 26  EFEPIHACDAREAQTAIADRLPDLILLDWMLPGTSGLDLARRWRKEQLTREIPIIMLTAR 85

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141
                 +   ++GVDD V KP   RE+LAR+ A+ RR +  +        R+  DG    
Sbjct: 86  GEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVGRLRIDGAAHR 145

Query: 142 VQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
           V     P+P    E R+L + M +  +   +TQ+   ++G     VEE  ++ HI +LRK
Sbjct: 146 VFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERTIDVHIRRLRK 204

Query: 200 KL 201
            L
Sbjct: 205 TL 206


>gi|150395862|ref|YP_001326329.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027377|gb|ABR59494.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 233

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 1   MFVLIDDRALVKDGYIA-LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M +LI +  L    Y+A  F + G+  +  +  E   ++ S    DV  ++  L  +   
Sbjct: 5   MKILIVEDDLEAAAYLAKAFREAGIVCDHASDGEAGLFMASENAYDVLVVDRMLPRRDGL 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L +  + R     P++ +S    +   +    +G DD + KP    E+LARV  + RR 
Sbjct: 65  SL-ITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRK 123

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +         QG+  PL  RE R+LEYLM N G+ V +T +   +
Sbjct: 124 GAPEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENV 183

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           +   FD   + NV++ H+S+LR K+     FDP  + + R  GY I
Sbjct: 184 WDYHFDP--QTNVIDVHVSRLRSKIEKD--FDPPLLRTIRGAGYMI 225


>gi|88799721|ref|ZP_01115296.1| DNA-binding response regulator [Reinekea sp. MED297]
 gi|88777615|gb|EAR08815.1| DNA-binding response regulator [Reinekea sp. MED297]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  L++ R  RA   + P++ ++   +    +D   +G DD + KP H  E+LAR+ A+
Sbjct: 56  GKNGLDVLRHWRASGVETPVLVLTARDAWHERVDGLKAGADDYLGKPFHEEELLARMDAL 115

Query: 116 Y-RRLKVSNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             RR  VS +   +G + + SD +   +  G    L   E R+L Y M N    ++KT++
Sbjct: 116 ARRRYGVSTDVITSGALTLNSDSQTVTDALGHQHQLTGVEFRLLRYFMMNPDVILSKTRL 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +Y   D   + NV+E +I++LR+    + G   + +KR  GY
Sbjct: 176 SEHVYE-EDMLRDSNVIEVYINRLRQ----RFGKSTIVTKRGQGY 215


>gi|317489999|ref|ZP_07948491.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|316910997|gb|EFV32614.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 226

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--- 129
            P++ ++   +    L    SG DD + KP    E+LAR+ AI RR   +  R + G   
Sbjct: 72  TPVLMLTARSATADKLRGLRSGADDYLAKPFDRDELLARIEAILRR---TTGRRDVGIVA 128

Query: 130 --PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              + + +  +   +  E   L  ++  ILEYL++++G  ++K ++F  I+G   +    
Sbjct: 129 FKELALHTRTQQAFIADEPLALKGKQYDILEYLVSHQGSLISKERLFDKIWGFMSD-TSS 187

Query: 188 NVVESHISKLRKKL 201
           NVVE ++S LRK L
Sbjct: 188 NVVEVYVSALRKAL 201


>gi|309775541|ref|ZP_07670541.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916635|gb|EFP62375.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 226

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 2/112 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ GVDD + KP   RE+LARV A + R+ +    R   G + +    R+  +   +  L
Sbjct: 92  FEQGVDDYITKPFSPRELLARVNAHLKRQSRKQEKRLAVGDLSMDMKRREAYIGDHMMTL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++E  +LEY + N+   +++  I + I+G FD   +  +V+ H+ KLR KL
Sbjct: 152 TKKEFDLLEYFIQNKDIVLSRDSILNDIWG-FDYDGDTRIVDVHVFKLRNKL 202


>gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
          Length = 239

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR K+                   +++  +  +   Q
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVKDTSDEESITIAELKILPEFYEAYFQ 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202
           G    L  +E  +L YL  N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233


>gi|163760210|ref|ZP_02167293.1| two component transcriptional regulator, winged helix family
           protein [Hoeflea phototrophica DFL-43]
 gi|162282609|gb|EDQ32897.1| two component transcriptional regulator, winged helix family
           protein [Hoeflea phototrophica DFL-43]
          Length = 222

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 110/231 (47%), Gaps = 22/231 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           ++L++D A + +  +     DG +++   +L E E++L ++A  D+  ++  L  G G +
Sbjct: 3   YLLVEDNAELSEAVVKRLALDGHAVDHATNLGEAEDYL-AAASYDLILLDVMLPDGDGRE 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L   R+   H + P+I ++    +   +   D G DD + KP    E+ AR  A+ RR 
Sbjct: 62  FLARSRV---HLETPVIVLTARSQVSDRVGALDQGADDYITKPFDFSELEARCRAVLRRR 118

Query: 120 -KVSNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + N    G +       V   G D         L  RE R+LE    + G+  +K+ 
Sbjct: 119 GGAARNEIALGAVTFDLLSGVLRSGND------TLELRSREIRLLEIFARHPGQIKSKSL 172

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +   ++  +D  V EN +E ++ +LR+++   +G   +++ R LGY ++ +
Sbjct: 173 LMDRLFS-YDATVSENAIEVYVGRLRRRI-EAVGL-RIETVRGLGYRLEID 220


>gi|154504930|ref|ZP_02041668.1| hypothetical protein RUMGNA_02440 [Ruminococcus gnavus ATCC 29149]
 gi|167767735|ref|ZP_02439788.1| hypothetical protein CLOSS21_02270 [Clostridium sp. SS2/1]
 gi|153794813|gb|EDN77233.1| hypothetical protein RUMGNA_02440 [Ruminococcus gnavus ATCC 29149]
 gi|167710474|gb|EDS21053.1| hypothetical protein CLOSS21_02270 [Clostridium sp. SS2/1]
 gi|291558907|emb|CBL37707.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
          Length = 221

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 22/173 (12%)

Query: 63  LPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           LPR+        +R  +  P+I +S    +QT +D    G DD + KP    E+LAR+ A
Sbjct: 55  LPRLNGNDVLQRLRKFTNAPVIVVSAKTMVQTKIDLLKLGADDYMTKPFDLHELLARIEA 114

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGE-------VFPLPRRERRILEYLMANRGKR 167
             +R   SN   +   +      RD E+          + P    E +IL  L+    K 
Sbjct: 115 NLKR--TSNTSCQNDTLTY----RDIEINNSLVYIKEVLVPFTSTELKILRLLLQYPQKI 168

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +K  ++ +I+     A +++ + +HIS +RKK++     D + +   +GY I
Sbjct: 169 FSKQNLYESIWN-ETYAYDDDTINTHISHIRKKIKAITNEDYIQTIWGIGYKI 220


>gi|15600553|ref|NP_254047.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
 gi|116053507|ref|YP_793834.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152987707|ref|YP_001351454.1| two-component response regulator PhoB [Pseudomonas aeruginosa PA7]
 gi|218894463|ref|YP_002443333.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           LESB58]
 gi|254237949|ref|ZP_04931272.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           C3719]
 gi|254243755|ref|ZP_04937077.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
 gi|296392220|ref|ZP_06881695.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAb1]
 gi|313106787|ref|ZP_07793002.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           39016]
 gi|12230950|sp|P23620|PHOB_PSEAE RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|9951681|gb|AAG08745.1|AE004948_1 two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
 gi|115588728|gb|ABJ14743.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169880|gb|EAZ55391.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           C3719]
 gi|126197133|gb|EAZ61196.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
 gi|150962865|gb|ABR84890.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas aeruginosa PA7]
 gi|218774692|emb|CAW30509.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           LESB58]
 gi|310879504|gb|EFQ38098.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           39016]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G+  LE E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR    ++ A   PI V     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRTGPGDSEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|115526887|ref|YP_783798.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520834|gb|ABJ08818.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 221

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 98/188 (52%), Gaps = 8/188 (4%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDS 93
           E W +    ED +AI   L   G   L + +  R++ + +P++ ++   S    +D  D+
Sbjct: 35  EAWFRGDT-EDYAAIILDLGLPGMDGLTVLKRWRSNDRRIPVLILTARGSWAERVDGIDA 93

Query: 94  GVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD + KP    E+LAR+ +I RR +  +++    G I +       + +G    L   
Sbjct: 94  GADDYLPKPFRMEELLARLRSIVRRSVGQASSLIHVGEISIDERQMRVDRRGVPVNLSPL 153

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E R++ YL  +RG+ V++ ++   IYG  ++A + N +E  I ++RKKL ++L    +++
Sbjct: 154 EYRLVSYLALHRGRVVSQHELSENIYG-NEDAHDSNAIEVLIGRVRKKLGSEL----IET 208

Query: 213 KRFLGYSI 220
           +R  GY +
Sbjct: 209 RRGFGYIV 216


>gi|210610878|ref|ZP_03288631.1| hypothetical protein CLONEX_00821 [Clostridium nexile DSM 1787]
 gi|210152273|gb|EEA83280.1| hypothetical protein CLONEX_00821 [Clostridium nexile DSM 1787]
          Length = 224

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 77/150 (51%), Gaps = 2/150 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKVSNNRAETGPI 131
           +P++ ++    +   +   D+G +D + KP H +E+LAR+ A+ R +   ++++ + G  
Sbjct: 73  IPVLLLTAKSEVDDKVAGLDAGANDYLAKPFHSKELLARIRAMTRTQTAQADSKLQIGNG 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +     +       F L  +E ++LE +M+N    ++  +    I+G +D   E NVV 
Sbjct: 133 TLDRATFELSTPAGSFRLANKEFQMLELMMSNPSHLISAERFMEKIWG-YDSEAEVNVVW 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +IS LRKKL        + + R +GYS++
Sbjct: 192 VYISYLRKKLTALHANIQIKATRNVGYSLE 221


>gi|47569605|ref|ZP_00240282.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47553720|gb|EAL12094.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 224

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR +
Sbjct: 61  LEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREE 120

Query: 121 VSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              N+  +      +++  + R      E   L  +E  +L   M N  + + +  + + 
Sbjct: 121 HIENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNVNRVLTRDVLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G +D  VE N+V+ ++  LR KL +    + + + R  GY
Sbjct: 181 VWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221


>gi|322377607|ref|ZP_08052097.1| nisin biosynthesis regulatory protein NisR [Streptococcus sp. M334]
 gi|321281372|gb|EFX58382.1| nisin biosynthesis regulatory protein NisR [Streptococcus sp. M334]
          Length = 228

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 80/145 (55%), Gaps = 4/145 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ ++IR    VP+  I+     +  +   ++G DD + KP   +E+LARV    RR  
Sbjct: 60  LEICQMIREQITVPICFITAKDMDEDLVAGINAGADDYIMKPFSMQELLARVKMHLRREE 119

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K + ++ + G + +++D ++  V  +   L RRE  I+ +L +N  K  +  +I++ +
Sbjct: 120 RIKGNVHQIKIGKLILYTDSKELFVNDDKIALTRREFDIVNFLASNPSKIYSIEEIYNYL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           Y    EA+  +V E +I ++R+KL+
Sbjct: 180 YPQSSEALLRSVSE-YIYQIRQKLK 203


>gi|291520902|emb|CBK79195.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 220

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   +  +  P  + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD    ++ + +HI  +R K  +   +D +  K   G    W
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD---YDYMPIKTVWGIGYKW 218


>gi|288573784|ref|ZP_06392141.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569525|gb|EFC91082.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 222

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 89/168 (52%), Gaps = 17/168 (10%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL + +R   +++P+I ++ + ++   ++  D+G DD + KP    E+ AR+ A+ RR+
Sbjct: 62  LELLQKMRDGGNRLPVIILTAWDTVPNRINGLDNGADDYMVKPFELEELSARIRALARRV 121

Query: 120 KVSNNRAETGP-IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                R ++ P IR+     DP  +     G    L   E  +L   + N G  +++ ++
Sbjct: 122 -----RGDSSPTIRIADLEIDPATKRVSKDGREVRLSHSEYVLLTTFVENVGIVLSRERL 176

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++YG +++ VE N ++ HI  LR+    KLG D V + R  GY +D
Sbjct: 177 EASLYG-WEKDVESNAIQVHIHNLRE----KLGTDIVKNVRGFGYLMD 219


>gi|153938141|ref|YP_001391433.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934037|gb|ABS39535.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP+I ++   S    L   + G DD + KP +   +LAR+  I +R    
Sbjct: 63  ICREIRKTSDVPIIIVTSRDSEVDELISMNLGADDFITKPYNTEILLARITNILKRAYGN 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           LK +NN        +         + +   L + E +IL YL+ NRG  V +  +   ++
Sbjct: 123 LK-TNNTLNYKDFNLNLSNATVIYKDKSLELTKNEVKILSYLINNRGNIVKRDSLMEYLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              D  V+++ +  +I++LRKKL+ ++G  +P++++R LGY
Sbjct: 182 K-SDYFVDDSTLTVNINRLRKKLQ-EIGIENPIETRRGLGY 220


>gi|126668450|ref|ZP_01739406.1| DNA-binding response regulator [Marinobacter sp. ELB17]
 gi|126627067|gb|EAZ97708.1| DNA-binding response regulator [Marinobacter sp. ELB17]
          Length = 221

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       +DG +++   SL F E    +   ++  ++  ++  G     
Sbjct: 4   LLVEDTTGLGEAVQDQISEDGHAVDWVQSLAFAETSVKTTPYNLILLD-LMLPDGHGFDF 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++       P+I ++    +   +   ++G DD + KP    E+ ARVAA+ RR + +
Sbjct: 63  LKKLRATGDTTPVIILTARDQVSDRITGLNAGADDYLVKPFDLSELSARVAAVARRYRGN 122

Query: 123 NNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N     G + V    R  +  G+   L  RE  + E  +   G  +++ Q+   +Y  F
Sbjct: 123 PNPLVRVGDLEVDLADRRIDRNGQPVELTAREWALFEGFLQRPGILLSRAQLEDRLYE-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              +E N +E +IS++RK    KLG D + + R +GY ++ N
Sbjct: 182 GAEIESNTIEVYISRMRK----KLGHDAIVTVRGMGYRLEPN 219


>gi|312863367|ref|ZP_07723605.1| putative response regulator ArlR [Streptococcus vestibularis F0396]
 gi|322516994|ref|ZP_08069883.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|311100903|gb|EFQ59108.1| putative response regulator ArlR [Streptococcus vestibularis F0396]
 gi|322124411|gb|EFX95908.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 224

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K   N    G +RV        V  +   L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFDQNTLSFGDVRVNLATNSTYVGDKEVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + K+QIF  ++G FD     +VVE ++SK+RKKL+       
Sbjct: 151 LGKEFDLLVYFLQNQNVILPKSQIFDRLWG-FDSDTTISVVEVYVSKIRKKLKGTDFATN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|325983378|ref|YP_004295780.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325532897|gb|ADZ27618.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 61  LELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           + L R +R  SQ+  P++ ++   +L+  L  F+ G DD + KP   +E+ AR+ A+++R
Sbjct: 60  MTLCRKLRQESQIDTPILMLTARDTLEDKLAGFEQGADDYLIKPFALKEVEARLLALHKR 119

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              KV+N   E   +           + +   LP +  R+L  +M+  GK  ++ ++   
Sbjct: 120 HLGKVANRTLEFDKLTFDPKTLSIRFENKNVKLPPKCIRLLALMMSEPGKVFSREELEME 179

Query: 177 IYGLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    E V+E  + + SH+  LR+ L    G+DP+++   LGY +
Sbjct: 180 AW----EDVQETSDTLRSHMHILRRALTKAGGYDPIETVHGLGYCL 221


>gi|169827613|ref|YP_001697771.1| putative sensory transduction protein [Lysinibacillus sphaericus
           C3-41]
 gi|168992101|gb|ACA39641.1| Hypothetical sensory transduction protein [Lysinibacillus
           sphaericus C3-41]
          Length = 220

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 107/220 (48%), Gaps = 5/220 (2%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD A +++       ++G  LE   + +  + L   A E V  +   ++        L
Sbjct: 1   MVDDDAHIRELVRVFLQNEG--LEVIEATDGVDALSKLASEKVDMVIMDIMMPNMDGWAL 58

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
              IR+ H+ +P++ ++        +  F  G DD + KP    E++ RV +I +R +++
Sbjct: 59  CEEIRSYHTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRIA 118

Query: 123 NNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++  E G +++     + ++ GE+  L  +E  +L  L +  GK  ++ Q+   I+G +
Sbjct: 119 LSQVVEVGNVKLNRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWG-Y 177

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  ++ HI ++R++   ++    + + R LGY ++
Sbjct: 178 DYEGDERTIDVHIKRIRERFPQEISGFVIRTLRGLGYRLE 217


>gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 236

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 6/142 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           RI+R  S VP+I ++        +   + G DD ++KP    E LARV AI RR +    
Sbjct: 65  RILRQESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAILRRSERQPH 124

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     E G IRV +  R     G+   LP++E  +L  LM NRG  + +  +   ++G
Sbjct: 125 SIVREVLEAGSIRVDASSRRAWRDGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             D   +   V+ HI  LR+K+
Sbjct: 185 Q-DFIGDSRTVDVHIRWLREKI 205


>gi|33595492|ref|NP_883135.1| putative two-component system response regulator [Bordetella
           parapertussis 12822]
 gi|33599877|ref|NP_887437.1| putative two-component system response regulator [Bordetella
           bronchiseptica RB50]
 gi|33565570|emb|CAE40212.1| putative two-component system response regulator [Bordetella
           parapertussis]
 gi|33567474|emb|CAE31387.1| putative two-component system response regulator [Bordetella
           bronchiseptica RB50]
          Length = 236

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 86/166 (51%), Gaps = 6/166 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL   R+ R  + +P++ ++    L   L  F  G DD + KP    E+ AR+ A+ 
Sbjct: 68  GHAVLHALRVER-RAALPVLMLTARDGLDDKLAGFAHGADDYLTKPFALAEVEARLLALI 126

Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +R +  V ++    GP++  S  R+  V G+   L R+   I+E L+ + G+ V++ Q+ 
Sbjct: 127 QRSRGAVVDSLRSFGPLQFDSATREVAVHGKPVHLTRKCGMIVEVLLRDPGRVVSREQLE 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +A++G  D+    + + S +  LR+ L +  GFD +++    G+ +
Sbjct: 187 NALWG--DDPPSSDALRSQVHLLRRALADA-GFDGIETVHGTGWRL 229


>gi|15828139|ref|NP_302402.1| two-component response regulator [Mycobacterium leprae TN]
 gi|221230616|ref|YP_002504032.1| two-component response regulator [Mycobacterium leprae Br4923]
 gi|34098418|sp|Q50136|PRRA_MYCLE RecName: Full=Transcriptional regulatory protein prrA
 gi|2440114|emb|CAB16701.1| two-component regulator [Mycobacterium leprae]
 gi|13093693|emb|CAC31078.1| two-component response regulator [Mycobacterium leprae]
 gi|219933723|emb|CAR72220.1| two-component response regulator [Mycobacterium leprae Br4923]
          Length = 233

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 5/152 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET- 128
           + VP+  +S   S+   +   ++G DD + KP    E++ARV A+ RR    + + +ET 
Sbjct: 78  NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETI 137

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             GP+ V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A +
Sbjct: 138 AVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTTVLSRAQLLELVWG-YDFAAD 196

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            NVV+  I  LR+KL    G   + + R +G+
Sbjct: 197 TNVVDVFIGYLRRKLEANSGPRLLHTVRGVGF 228


>gi|154245228|ref|YP_001416186.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159313|gb|ABS66529.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 8/149 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETG 129
           P++ ++      + +   + G DD + KP +  E++ARV A+ RR    L VS    + G
Sbjct: 74  PILVLTARDGAPSVIAGLNGGADDYMRKPFNVDELIARVRALLRRPGSALGVS---LKEG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + + +  R   V G    L R+E   LE LM   G  ++K  +   +YG + E V  N 
Sbjct: 131 NVELDTIARQARVDGVGLDLSRKEAAALELLMRRTGAVISKPALEETLYG-YGEEVSSNA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VE  I +LRKKL        + + R +GY
Sbjct: 190 VEVLIHRLRKKLAGAGAVVEIHTLRGIGY 218


>gi|332761097|gb|EGJ91384.1| transcriptional regulatory protein phoP [Shigella flexneri K-671]
          Length = 263

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 5/205 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R++   +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKL 205
             E  E + ++  + +LRKK R+ +
Sbjct: 181 DAELRESHTIDVLMGRLRKKFRHNI 205


>gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R   + P+I ++   S+   +   D G DD + KP    E+LAR+ ++ RR+ 
Sbjct: 61  LEVARRLRESKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIA 120

Query: 121 V---SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   SN++  +      +R+  + R      ++  L +RE  +L  L+ N     ++ Q+
Sbjct: 121 IETESNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINIVQSREQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G FD  VE NVV+ +I  LR K+
Sbjct: 181 LKEVWG-FDSEVETNVVDVYIRYLRNKI 207


>gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus DSM
           44985]
 gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 240

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+    ++ P++ ++   SL+  L     G DD V KP    E++AR+  I RR   S
Sbjct: 76  LRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAGKS 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   E+ P  VF D    E   EV+      PL   E  +L Y M N    ++K QI   
Sbjct: 136 DGARES-PTLVFEDIELNEETHEVWKAGVLVPLSPTEFTLLRYFMVNARIVLSKRQILEH 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++  +D   + NVVES++S LR+K+
Sbjct: 195 VWH-YDFGGDMNVVESYVSYLRRKI 218


>gi|227878289|ref|ZP_03996251.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256844179|ref|ZP_05549666.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256850449|ref|ZP_05555876.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|262047895|ref|ZP_06020842.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|312976705|ref|ZP_07788454.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
 gi|227862120|gb|EEJ69677.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256614084|gb|EEU19286.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256712654|gb|EEU27648.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|260571802|gb|EEX28376.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|310896033|gb|EFQ45098.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
          Length = 239

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 22/223 (9%)

Query: 18  LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP-------- 64
           L  +D  S+  F    LEFE++    A +   A++ F   K   +L    LP        
Sbjct: 9   LLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPVYDGMTVL 68

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           R IR  S VP+I ++   S        D G+DD + KP    E+LAR+  + RRL+    
Sbjct: 69  RRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEKMRQ 128

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V +   E GP+++     +     E   L  +E  ++  LM +  K  ++ ++   +
Sbjct: 129 QNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKSRDELLDTV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + N V+ +I  +R K+ N      + + R LGY +
Sbjct: 189 WG-YDFVGQTNTVDVYIRTIRNKIGNPYK-KIIKTMRGLGYCL 229


>gi|53716914|ref|YP_105697.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
           23344]
 gi|53722061|ref|YP_111046.1| transcriptional activator protein [Burkholderia pseudomallei
           K96243]
 gi|76818559|ref|YP_335189.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|121596825|ref|YP_989627.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
 gi|124381657|ref|YP_001024226.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
 gi|126444012|ref|YP_001062520.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126445741|ref|YP_001078366.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
 gi|126456086|ref|YP_001075473.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
 gi|134283471|ref|ZP_01770171.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
 gi|167003030|ref|ZP_02268820.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
 gi|167723508|ref|ZP_02406744.1| transcriptional activator IrlR [Burkholderia pseudomallei DM98]
 gi|167742474|ref|ZP_02415248.1| transcriptional activator IrlR [Burkholderia pseudomallei 14]
 gi|167819642|ref|ZP_02451322.1| transcriptional activator IrlR [Burkholderia pseudomallei 91]
 gi|167828025|ref|ZP_02459496.1| transcriptional activator IrlR [Burkholderia pseudomallei 9]
 gi|167849481|ref|ZP_02474989.1| transcriptional activator IrlR [Burkholderia pseudomallei B7210]
 gi|167898085|ref|ZP_02485487.1| transcriptional activator IrlR [Burkholderia pseudomallei 7894]
 gi|167906419|ref|ZP_02493624.1| transcriptional activator IrlR [Burkholderia pseudomallei NCTC
           13177]
 gi|167914754|ref|ZP_02501845.1| transcriptional activator IrlR [Burkholderia pseudomallei 112]
 gi|167922645|ref|ZP_02509736.1| transcriptional activator IrlR [Burkholderia pseudomallei BCC215]
 gi|217419095|ref|ZP_03450602.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
 gi|226199348|ref|ZP_03794907.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
           9]
 gi|237509707|ref|ZP_04522422.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|238562934|ref|ZP_00439668.2| transcriptional activator protein IrlR [Burkholderia mallei GB8
           horse 4]
 gi|242312627|ref|ZP_04811644.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
 gi|254174272|ref|ZP_04880934.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
 gi|254183534|ref|ZP_04890126.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
 gi|254190152|ref|ZP_04896661.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193175|ref|ZP_04899610.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
 gi|254200501|ref|ZP_04906866.1| transcriptional activator IrlR [Burkholderia mallei FMH]
 gi|254204526|ref|ZP_04910879.1| transcriptional activator IrlR [Burkholderia mallei JHU]
 gi|254263255|ref|ZP_04954120.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
 gi|254300419|ref|ZP_04967865.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
 gi|254356844|ref|ZP_04973119.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
 gi|55977758|sp|O31395|IRLR_BURPS RecName: Full=Transcriptional activator protein irlR
 gi|52212475|emb|CAH38501.1| transcriptional activator protein [Burkholderia pseudomallei
           K96243]
 gi|52422884|gb|AAU46454.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
           23344]
 gi|76583032|gb|ABA52506.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|121224623|gb|ABM48154.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
 gi|124289677|gb|ABM98946.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
 gi|126223503|gb|ABN87008.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126229854|gb|ABN93267.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
 gi|126238595|gb|ABO01707.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
 gi|134245220|gb|EBA45314.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
 gi|147748113|gb|EDK55188.1| transcriptional activator IrlR [Burkholderia mallei FMH]
 gi|147754112|gb|EDK61176.1| transcriptional activator IrlR [Burkholderia mallei JHU]
 gi|148025871|gb|EDK83994.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
 gi|157809906|gb|EDO87076.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
 gi|157937829|gb|EDO93499.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695318|gb|EDP85288.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
 gi|169649929|gb|EDS82622.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
 gi|184214067|gb|EDU11110.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
 gi|217398399|gb|EEC38414.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
 gi|225928563|gb|EEH24591.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
           9]
 gi|235001912|gb|EEP51336.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|238521676|gb|EEP85126.1| transcriptional activator protein IrlR [Burkholderia mallei GB8
           horse 4]
 gi|242135866|gb|EES22269.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
 gi|243061379|gb|EES43565.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
 gi|254214257|gb|EET03642.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 17/217 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           + L + G+IA + +DGV+  G +  E EE+       D+  ++  L G  G  VLE  R+
Sbjct: 18  KGLTEAGFIADWVEDGVT--GLHQAETEEY-------DLIILDVMLPGHDGWTVLE--RL 66

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
            RAHS  P++ ++    +   +   + G DD V KP    E++ARV +I RR +   +  
Sbjct: 67  RRAHS-TPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQARESTV 125

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
                + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ + F+  
Sbjct: 126 LRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDMNFNS- 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + NVV++ I +LR K+ +      + + R +GY ++
Sbjct: 185 -DTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 232

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 9/161 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           RI+R  S VP+I ++        +   + G DD + KP    E LARV AI RR +    
Sbjct: 65  RILRQESDVPIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAILRRSERQPH 124

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     E G IRV +  R     G+   LP++E  +L  LM NRG  + +  +   ++G
Sbjct: 125 SIVREVLEAGAIRVDTSSRRAWRNGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218
             D   +   V+ HI  LR+K+    G  PV   + R +GY
Sbjct: 185 Q-DFIGDSRTVDVHIRWLREKIEPDPG-KPVYIQTVRGVGY 223


>gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++D        +G  ++  +       L  +   D+  ++  L   G   L
Sbjct: 4   ILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHYDLVLLDLML--PGVDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  SQVP+I ++        +   + G DD + KP   RE++ARV A+ RR+  
Sbjct: 62  TICKEIRKFSQVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVLRRMAP 121

Query: 122 SN-NRAETGPIRVFSDGR-DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              N  +   +  F D   +PE     V+G+   L  RE  +L +L +  G+  ++ Q+ 
Sbjct: 122 GTVNLPQPERLLTFPDLEINPESRVVVVKGQEISLTPREFDLLLFLASFPGRAFSREQLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++G +D   +   V++HI++LR KL       P+ +   +GY  +
Sbjct: 182 TNVWG-YDYFGDLRTVDTHINRLRDKLSVNGARQPIATVWGVGYKFE 227


>gi|291541544|emb|CBL14654.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 226

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 3/141 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           L + IR +S VP++ I+   S    L+ +  G DD + KPI       +V A+ +R K  
Sbjct: 66  LCKEIRRYSDVPIMFITARTSEADMLNGYALGCDDYIVKPIALPVFYEKVKALIKRSKGL 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V +N    G + +  +       GE   L  +E  IL+ L+ N+   V++ +I +A++  
Sbjct: 126 VRHNLLTVGNVSLNPNNGVVVSDGEEVTLTAKEYAILKILLENKNSVVSREKIITAVWH- 184

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +D  ++E V+++HI  +RK L
Sbjct: 185 YDTMIDERVLDTHIKNIRKAL 205


>gi|237715036|ref|ZP_04545517.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262409016|ref|ZP_06085561.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294645619|ref|ZP_06723312.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294809922|ref|ZP_06768596.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444869|gb|EEO50660.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262353227|gb|EEZ02322.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292639064|gb|EFF57389.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294442768|gb|EFG11561.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087844|emb|CBK69367.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bacteroides
           xylanisolvens XB1A]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 24/195 (12%)

Query: 21  DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVP 74
           ++G  ++  NS E       + + D+S+    L+        G K+  + +  +  ++VP
Sbjct: 25  NEGYEVDTANSAE------EAMKMDISSYHLILLDVMMGEISGFKMANILKKDKKTAKVP 78

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134
           +I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR        E  P R+ 
Sbjct: 79  IIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR--TVTTETERAPERLT 136

Query: 135 SDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VE 186
                     +   +  E  PL ++E  IL  L+ N+G+  ++  I + I+   DE  V 
Sbjct: 137 YQSLVIDITKKKVSIDDEEVPLTKKEFEILLLLVQNKGRVFSREDILARIWS--DEVYVL 194

Query: 187 ENVVESHISKLRKKL 201
           +  ++ +I++LRKK+
Sbjct: 195 DRTIDVNITRLRKKI 209


>gi|229134011|ref|ZP_04262831.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228649346|gb|EEL05361.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 228

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 66/148 (44%), Gaps = 7/148 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +      S
Sbjct: 64  VCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYSS 123

Query: 123 NNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                T        I V    R   V GE   +   E  IL Y M N+G  +++ Q+ + 
Sbjct: 124 TVNVSTADTLTSSGIHVHFPSRTVTVDGEGISMTHTEFEILTYFMQNQGIVISREQLITK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           I+G ++ A ++  V SHI  LR KL  K
Sbjct: 184 IWG-YEFAGDDRTVNSHIRNLRHKLGQK 210


>gi|227537811|ref|ZP_03967860.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242425|gb|EEI92440.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 232

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 13/199 (6%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           +L++ G   L  +  V+L G   LE    +  S   D+  ++  L   G   L + R IR
Sbjct: 14  SLIRRGLSELNFNISVALNGLTGLE----MAVSGSYDLIILDVML--PGMDGLRVCRNIR 67

Query: 69  AHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----- 122
              + VP++ +S     +  +D F S  DD + KP +  E+ ARV+   R++  +     
Sbjct: 68  QQKKNVPILILSALDQPEDIVDGFKSDADDYLTKPFNMEELKARVSRFSRKIGQTSKVEE 127

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N+  E   + +    +  + Q     L   E R+LE+LM N+ + V++  I  +++G+ D
Sbjct: 128 NSNLEFADLTLDYSSKIAKRQDVDIALTATEFRLLEFLMKNQKRVVSRIDILESVWGM-D 186

Query: 183 EAVEENVVESHISKLRKKL 201
             +  NVV+ +I+ LR K+
Sbjct: 187 FNLSTNVVDVYINYLRNKI 205


>gi|183599453|ref|ZP_02960946.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827]
 gi|188021700|gb|EDU59740.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827]
          Length = 224

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 2/152 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++   S Q  +   +SG DD V KP H  E++AR+ A+ RR   +++   E    
Sbjct: 73  IPVLVLTARESWQEKVQALNSGADDYVTKPFHLEELVARMQALMRRNSGLASQVLELDGF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    ++  V GE   L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 133 VIDLSRKEFTVNGEPVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP-DAELRESHTID 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             + +LRKK++     D + + R  GY  D N
Sbjct: 192 VLMGRLRKKIQQFHANDVIVTVRGQGYRFDVN 223


>gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 8/205 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG  +    + + EE L+ +   +   I   L+      L
Sbjct: 5   ILIVDDEPLLVKGLKYSLEQDGYEI--LTAFDGEEALEKAKIANADLILLDLMLPKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR +SQ P+I ++      + +   + G DD + KP +  E+ AR+ A+ RR + 
Sbjct: 63  QVCQQIRLNSQTPIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVLRRYQS 122

Query: 122 SNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S+   E   I     ++ + GR   ++GE   L  +E  +L  L +N GK  ++ ++   
Sbjct: 123 SDKPIEERVIKIDDFKINTLGRKVSLKGEEVNLTAKEFDLLLLLASNPGKIYSREELLEI 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           I+G ++   +   V+ HI +LR+K+
Sbjct: 183 IWG-YEYFGDLRTVDVHIRRLREKI 206


>gi|114561426|ref|YP_748939.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332719|gb|ABI70101.1| transcriptional regulator [Shewanella frigidimarina NCIMB 400]
          Length = 224

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 5/129 (3%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF---SDGRDPEVQGEVFPL 149
           +G DD ++KP    E+ AR+  + RR ++ N + +T  +  F   ++ +     G    L
Sbjct: 93  AGADDYLSKPFSFDELQARLLCLGRRGEL-NQQVKTICVANFVLDTNNKSLHADGHYIDL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            + E +I+EYL +N  + +   QI  A+ G F+  + +N +E+H+S +RKK +      P
Sbjct: 152 TKNEFKIVEYLFSNPKQVLNPEQISEAVVGSFNH-LSKNTIEAHLSSVRKKAKAVGVTLP 210

Query: 210 VDSKRFLGY 218
           + +KR  GY
Sbjct: 211 IKNKRGFGY 219


>gi|322388231|ref|ZP_08061835.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321140903|gb|EFX36404.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 227

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 100/220 (45%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L++D  + L    G  ++     +F++  Q   + D   I   L   GE   
Sbjct: 4   ILVIEDETLIRDEIVILLEKAGYQVDKLT--DFKDTSQQVLQYDTDLIILDLNLPGETGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +++   VP++ ++    L+  +     G D+ + KP      LAR+  I +R + 
Sbjct: 62  QICKNLKSKRSVPILVLTSREQLKDEIYALKLGADEYLTKPFKKERFLARIENILKRYEG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  E     +  +     + G    LP+ + ++LE L+      V K ++   ++   
Sbjct: 122 RQNLLEKDNFLLDRNTYTLYINGHSILLPQNQGKLLETLLVTTDSVVTKEELSMKLWN-T 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E ++EN ++ +I++L+K ++       V S R +GY ++
Sbjct: 181 TEFIDENALQVNIARLKKVMKQAGIALKVKSVRGIGYKLE 220


>gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 234

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +    + + EE L+   +E+   +   L+   +  L
Sbjct: 4   ILVVDDEKPISDIITYTLKNEGYDI--VTAFDGEEALEQFEKENPDLVLLDLMLPKKTGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E+ R IR  S VP+I ++   S    +   + G DD V KP  +RE+ ARV A  RR   
Sbjct: 62  EVCREIRKDSAVPIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASLRRNAL 121

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           V+++ +ET       G + V  +      +G+   L  RE  +L YL  + G+ + +  +
Sbjct: 122 VTSDTSETESSDIVIGDLVVHQEAYIASKRGQEIELTHREFELLHYLAKHIGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
              ++G +D   +   V+  I +LR+K+ ++      + ++R +GY
Sbjct: 182 LETVWG-YDYFGDVRTVDVTIRRLREKIEDQPSHPSYIVTRRGVGY 226


>gi|168183809|ref|ZP_02618473.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795567|ref|YP_002863119.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673082|gb|EDT85043.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229264158|gb|ACQ55191.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP+I ++   S    L   + G DD + KP +   +LAR+  I +R    
Sbjct: 63  ICREIRKTSDVPIIIVTSRDSEVDELISMNLGADDFITKPYNTEILLARITNILKRAYGN 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           LK +NN        +         + +   L + E +IL YL+ NRG  V +  +   ++
Sbjct: 123 LK-TNNTLNYKDFNLNLSNATVIYKDKSLELTKNEVKILSYLINNRGNIVKRDSLMEHLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              D  V+++ +  +I++LRKKL+ ++G  +P++++R LGY
Sbjct: 182 K-SDYFVDDSTLTVNINRLRKKLQ-EIGIENPIETRRGLGY 220


>gi|164688051|ref|ZP_02212079.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM
           16795]
 gi|164602464|gb|EDQ95929.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM
           16795]
          Length = 232

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 19/163 (11%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + IR    QV +I ++     +  L+ F SG DD + KP   +E+L RVAA+ RR+
Sbjct: 63  IEVCKYIRQKFDQVGIIMLTAKAQEEDKLEGFISGADDYIVKPFSIKELLVRVAALLRRV 122

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     +  N+  + P  +  D R     G+   L   E  I++YLM N  + +++ QI 
Sbjct: 123 KKEESSMKLNKIVSDPFELDLDKRKLFKNGKEIELTPTEFSIVKYLMVNAKQSLSRDQIL 182

Query: 175 SAIYG---LFD-EAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           + ++G   L+D + V+ N+         +++RNK+  DP   K
Sbjct: 183 TEVWGNNYLYDFKIVDVNI---------RRIRNKIEDDPSKPK 216


>gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 234

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 10/139 (7%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQG 144
            + G DD + KP   RE++ARV AI RR  ++   AE       G + +F +  +  V  
Sbjct: 93  LELGADDYMTKPFSPREVVARVKAILRRTDLAQPAAEPSERLVIGDLEIFPERYEAAVGD 152

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +   L  +E  +L +L  ++G+ + + Q+ SA++  +D A +  +V+ HIS LR+K+   
Sbjct: 153 KPLELTPKEFELLLHLARHKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLREKIEED 211

Query: 205 LGFDPVDSK--RFLGYSID 221
               PV  K  R LGY ++
Sbjct: 212 TK-KPVYIKTVRGLGYKLE 229


>gi|187477032|ref|YP_785056.1| two-component system response regulator [Bordetella avium 197N]
 gi|115421618|emb|CAJ48128.1| two-component system response regulator [Bordetella avium 197N]
          Length = 228

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 79/150 (52%), Gaps = 5/150 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130
           VP++ ++    L   L  F  G DD + KP    E+ AR+ A+ +R +  V +     GP
Sbjct: 78  VPVLILTARDGLDDKLAGFSHGADDYLTKPFALAEVKARLLALIQRSRHAVVDAVYRFGP 137

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + S  R+  V G+   L R+   I+E L+ + GK V++  + +A++G  DE    + +
Sbjct: 138 LAMDSRSREVSVNGKPVHLARKSVLIVEMLLRDPGKVVSRETLEAALWG--DEPPASDAL 195

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            S +  LR+ L ++ GFD +++   +G+ +
Sbjct: 196 RSQVHLLRRAL-SEAGFDGIETTHGIGWRL 224


>gi|110806919|ref|YP_690439.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 5
           str. 8401]
 gi|110616467|gb|ABF05134.1| QseB [Shigella flexneri 5 str. 8401]
 gi|332752697|gb|EGJ83082.1| transcriptional regulatory protein qseB [Shigella flexneri K-671]
          Length = 210

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 6/148 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132
           P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR    ++N    G + 
Sbjct: 65  PVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVM 124

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y  +DE V  N VE 
Sbjct: 125 LDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY-TWDEEVTSNAVEV 183

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           H+  LR+    KLG D + +   +GY++
Sbjct: 184 HVHHLRR----KLGSDFIRTVHGIGYTL 207


>gi|331002009|ref|ZP_08325529.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411805|gb|EGG91210.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 93/185 (50%), Gaps = 6/185 (3%)

Query: 22  DGVSLEGFNSLEFEEWLQS----SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
           D ++++GF  LE ++  Q+       +D+  I   ++       E   ++R +S+VP+I 
Sbjct: 21  DFLTIKGFIVLEAQDGEQALKVFDENKDIKLILLDVMMPKLDGFETLEVLRQYSKVPVIM 80

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSD 136
           ++     +  L  +  GVD+ + KP   + ++ARV A+ RR +  S  +   G I +   
Sbjct: 81  LTARSEERDELLGYKLGVDEYITKPFSPKILVARVEAVLRRTIGESEEKLVAGAIEIDKV 140

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R   +  +   L  +E  +L Y + N+G  +++ +I S+++  +D   +   +++H+ K
Sbjct: 141 ARSVYIDQKPVDLSFKEYELLTYFIENKGIALSREKILSSVWN-YDYFGDARTIDTHVKK 199

Query: 197 LRKKL 201
           LR K+
Sbjct: 200 LRAKM 204


>gi|327441643|dbj|BAK18008.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 228

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 16/165 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA   +P+I +S        +     G DD + KP H  E++ARV +  RR        
Sbjct: 69  IRAERNIPIIMLSAKAEQSDKIHGLSVGADDYITKPFHPLELMARVKSQLRRYVNFGTAG 128

Query: 127 ETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           E  P    + + +  R+  V GE   L   E +I E L+ N G+  + + I+  ++   +
Sbjct: 129 EAAPLVEGLELDAAAREIRVDGEPVKLTPTEYKITELLLKNAGRVYSISDIYELVWN--E 186

Query: 183 EAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
            A   EN+V  HI K+R+K+      DP + +       LGY I+
Sbjct: 187 PAYNAENIVAVHIRKIREKIE----ADPKNPRYLKVVWGLGYKIE 227


>gi|320335876|ref|YP_004172587.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319757165|gb|ADV68922.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 221

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 5/155 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +S VP+I ++   ++   +     G DD V KP H  E+LAR+    R  +  +   
Sbjct: 69  LRKNSTVPVIVLTARDTVDEKVRLLSLGADDYVIKPFHPDELLARIKVQLR--QRGSETL 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAV 185
             G +++    R    QGE   L  +E  IL  LM   G+  ++ +I   I+ G   E  
Sbjct: 127 TLGDLQLDPQKRLVLFQGEELRLSPKEFDILALLMRQPGRVYSRQEIGQEIWQGRLPEG- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             NVV+ H++ LR KLR+  G+  + + R +GY++
Sbjct: 186 -SNVVDVHMANLRAKLRDLEGYGLLRTVRGVGYAL 219


>gi|307825418|ref|ZP_07655637.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307733593|gb|EFO04451.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 224

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 97/202 (48%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A++ DG        G S+    +  + + L  +   D+  ++  L       L
Sbjct: 3   ILLIEDDAVLADGLTHTLSGSGYSVTSATTGGYADQLLQAQGFDLIVLDLGL--PDMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R+    +P++ ++    +   ++  + G DD + KP   RE+ ARV A+ RR  
Sbjct: 61  ELLRKLRSRKIPLPILILTARDGVNDRINGIEQGADDYMTKPFELRELEARVHALIRRCY 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N    G + + +      V G+   L  RE  +LE L+   GK V+K +I   +  
Sbjct: 121 GGFSNDIVIGRLALDTHNHQVLVDGQTINLSAREYGVLEILLIQAGKVVSKDRIAQRL-A 179

Query: 180 LFDEAVEENVVESHISKLRKKL 201
           +  +A+ +N VE ++ +LRK++
Sbjct: 180 VDGDALTDNAVEIYVHRLRKRI 201


>gi|237710556|ref|ZP_04541037.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|229455278|gb|EEO60999.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 4/150 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  ++ + H +  +I +S   S++  +   D G DD + KP H  E+ AR+ +
Sbjct: 57  GSGLDLLE--KLKKMHKRENVIILSAKDSIEDKVLGLDLGADDYLPKPFHLVELNARIKS 114

Query: 115 IYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR +    N  + G I +F D     V G+   L R+E  IL Y M   G+ V K  +
Sbjct: 115 VIRRHQQGGKNSIKYGNIEIFPDKYGVTVAGKKIELNRKEYDILVYFMNRPGRLVNKNTL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLR 202
             +++G   D+    + + + I  LRK+L+
Sbjct: 175 AESVWGDHIDQVDNFDFIYAQIKNLRKRLK 204


>gi|209543504|ref|YP_002275733.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531181|gb|ACI51118.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 234

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 16/196 (8%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67
            L +DG    +  +G   +G ++     W       DV  ++  L G  G  +L+  R+ 
Sbjct: 26  GLARDGIGVTWVANGT--DGLSAALGRHW-------DVIVLDRMLPGLDGMAILK--RVR 74

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
               ++P++ ++    + + +     G DD + KP   RE+ ARVA + RR+ ++ +   
Sbjct: 75  EVGIRIPVLFLTTMDGVNSRVGGLRGGADDYLVKPFAVRELAARVAVLLRRMGLARDATV 134

Query: 128 TGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                +  D    EV   GE   L  +E RILEY M N G  +++  +  A     D  V
Sbjct: 135 LRAAGITLDLLTREVTRHGEKLFLQPQEVRILEYFMRNPGTILSRRMLLHAWN--VDFPV 192

Query: 186 EENVVESHISKLRKKL 201
             N+VE+H+S+LR KL
Sbjct: 193 HTNLVETHLSRLRDKL 208


>gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus
           ATCC 53653]
          Length = 290

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 8/163 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R   +VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   +
Sbjct: 127 LGRLRRELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGAA 186

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             R+E+    G + +  D  +    G+   L   E  +L YLM N  + ++K QI   ++
Sbjct: 187 AARSESVLAVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 246

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +D   + NVVE +IS LR+K+    G  P + ++R  GY I
Sbjct: 247 S-YDFGGQANVVELYISYLRRKI--DAGRSPMIHTRRGAGYLI 286


>gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 226

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 86/166 (51%), Gaps = 5/166 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP+I ++    +   +   D+G +D ++KP    E+LAR+  +Y R K
Sbjct: 63  IEVCRRIRQFSHVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARI-RVYERDK 121

Query: 121 VSNNRAETGPIR-VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N+ +   ++ +  D +  +V   G+   L + E  +L+ L+ N+   + + ++   +
Sbjct: 122 ALKNQTDQIKVKNIVMDNKTHQVLRDGKEIELTKTEYNLLKMLLINKNIVLTRDKLIEEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D + + NVV+  I  LR K+ N+     + + R +GY I  N
Sbjct: 182 WG-YDYSGDTNVVDVFIRYLRSKIDNERQDKLITTIRGVGYVIKDN 226


>gi|317152805|ref|YP_004120853.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316943056|gb|ADU62107.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 232

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 17/185 (9%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           DV  ++  L G+G   LE+ R++R      P+I IS   S++  +   D+G DD + KP 
Sbjct: 46  DVVLLDLTLPGRGG--LEVLRMLRRRGINAPVILISGSDSVEDKVAGLDAGADDYIVKPF 103

Query: 104 HHREILARVAAIYRR-------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
              E+LAR+  + RR       L    + A     R+ + G      G    L  RE  +
Sbjct: 104 AFPEVLARIRVVLRRGWADQVLLLRCGDLAMDLITRIVTRG------GRTIALTAREFEL 157

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           LEYL+ + G+ V +  +   I+     A   +NV++ HI+++RKKL +      + ++R 
Sbjct: 158 LEYLLRHPGRVVTRDMLARDIWQEDTRATNLDNVIDVHIARIRKKLDHGHERKLLHTQRG 217

Query: 216 LGYSI 220
           +G+ +
Sbjct: 218 VGFQL 222


>gi|119484322|ref|ZP_01618939.1| OmpR subfamily protein [Lyngbya sp. PCC 8106]
 gi|119457796|gb|EAW38919.1| OmpR subfamily protein [Lyngbya sp. PCC 8106]
          Length = 234

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 21/220 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + LV + Y+  +  DG         +  ++L+S   +   AI  +L+  G   LEL + +
Sbjct: 18  QVLVSEKYVVDWVIDGT--------QAWDYLESQWTDYTVAIFDWLL-PGLSGLELCQRL 68

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R H   +P++ ++     +  +   D+G DD + KP    E+LAR+ A+ RR       +
Sbjct: 69  RVHQNPLPILMLTALGQSENRVKGLDAGADDYLVKPFVMEELLARLRALQRRSPQLQPPS 128

Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            T  I  FS          +  EV   V PL  +E +IL YLM NR + +  ++I   ++
Sbjct: 129 LT--IGTFSLDYANNALCVKGSEVSPTVIPLTIKEFQILAYLMQNRDRIIPGSKIRHQLW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             F+E    NVV + +  LR+KL +     P+++    GY
Sbjct: 187 D-FNEEPISNVVAAQMRLLRRKLASYGCDCPIETIPGQGY 225


>gi|99034436|ref|ZP_01314439.1| hypothetical protein Wendoof_01000759 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 156

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 1/106 (0%)

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           D + KP H  E+LAR+ AI RR K       + G I +  D R  EV+G+   L  +E  
Sbjct: 1   DYLTKPFHKSELLARIKAIVRRTKGHPESVIKIGNININFDHRVVEVKGKTVHLTNKEYS 60

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++E L   +G  + K    + +Y   DE  +  +V+  + KLRKKL
Sbjct: 61  MIELLALRKGTVLTKEMFLNHLYNGLDEPSDNKIVDVFMCKLRKKL 106


>gi|295090361|emb|CBK76468.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 13/196 (6%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIR 68
           L+K+GY     +DG        +     L +    D++ ++  L +  G  +++  R  R
Sbjct: 21  LMKNGYSVDCCNDG-------EIAMLYALNTDYGYDLAIVDRMLPVIDGLTIIKAMR--R 71

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
            + Q+P+I I+   +L   +D  D G DD + KP H RE++ARV A+ RR  ++    A 
Sbjct: 72  KNIQIPVIIITGMSALDDRVDGLDGGADDYLVKPFHIRELMARVRALTRRPQQIQETEAL 131

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +   + +    R     G+   L  RE  +L  LM       ++ Q+   ++G  +  +E
Sbjct: 132 SYADLHLDYPNRKIVCNGQDLVLTAREAELLSVLMKQPKTAFSREQLVLKVWG-SNADIE 190

Query: 187 ENVVESHISKLRKKLR 202
              V+++IS LRK+LR
Sbjct: 191 PGNVDNYISFLRKRLR 206


>gi|94309410|ref|YP_582620.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353262|gb|ABF07351.1| DNA-binding response regulator in two-component regulatory system
           with Rmet_0464 [Cupriavidus metallidurans CH34]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +RA S  VP++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLKRLRARSAMVPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 120 AGGGATLMRHGPLAFDQVGRIAYLNEQMLDLSAREVGLLEILLTRSGRLVSKEQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKK+  ++G   + + R LGY ++
Sbjct: 180 E-WGEEVSNNAIEVYVHRLRKKI--EVGGIRIATVRGLGYCLE 219


>gi|300787588|ref|YP_003767879.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797102|gb|ADJ47477.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 228

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 95/202 (47%), Gaps = 6/202 (2%)

Query: 2   FVLIDDRALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D A++ +   +AL  +D   L      +  + L+S++   V  +   L+  G   
Sbjct: 7   VLLVEDDAMISEALSLALTDEDFDVLAAATGEDGLDLLESTS---VDVVLLDLMLPGIDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R H  +P+I I+        +   ++G DD V KP+   E+ AR+ A+ RR  
Sbjct: 64  LTVCRRVREHGDLPIIVITARTDTHDVIAGLEAGADDYVTKPLVAGELAARIRALLRRTA 123

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   R   G + +  D       G    L R E R+L  L A  GK V + Q+   ++G
Sbjct: 124 SARPARFSVGRLEIRPDEEAVHRDGVPVHLTRTEFRLLTELAAAEGKVVTREQLLQRVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             D   +  +++ HI +LR+K+
Sbjct: 184 -HDYFGDTRLLDVHIRRLRRKV 204


>gi|212695008|ref|ZP_03303136.1| hypothetical protein BACDOR_04546 [Bacteroides dorei DSM 17855]
 gi|237727052|ref|ZP_04557533.1| two-component system response regulator [Bacteroides sp. D4]
 gi|265750332|ref|ZP_06086395.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
 gi|212662324|gb|EEB22898.1| hypothetical protein BACDOR_04546 [Bacteroides dorei DSM 17855]
 gi|229433908|gb|EEO43985.1| two-component system response regulator [Bacteroides dorei
           5_1_36/D4]
 gi|263237228|gb|EEZ22678.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 4/150 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  ++ + H +  +I +S   S++  +   D G DD + KP H  E+ AR+ +
Sbjct: 57  GSGLDLLE--KLKKMHKRENVIILSAKDSIEDKVLGLDLGADDYLPKPFHLVELNARIKS 114

Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR +    N  + G I +F D     V G+   L R+E  IL Y M   G+ V K  +
Sbjct: 115 VIRRHQQGGENSIKYGNIEIFPDKYGVTVAGKKIELNRKEYDILVYFMNRPGRLVNKNTL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLR 202
             +++G   D+    + + + I  LRK+L+
Sbjct: 175 AESVWGDHIDQVDNFDFIYAQIKNLRKRLK 204


>gi|152991573|ref|YP_001357295.1| two-component response regulator [Nitratiruptor sp. SB155-2]
 gi|151423434|dbj|BAF70938.1| two-component response regulator [Nitratiruptor sp. SB155-2]
          Length = 218

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 10/162 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +  + ++VP I I+    +      F+ G  D + KP   +E+  R+  + +R    
Sbjct: 63  LKELRESGNEVPAIFITSLTHVDDLSKGFELGCCDYIKKPFDLKELEVRLKNVLKRECFG 122

Query: 123 NNRAETG-PIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N+     P     D    E++  GEV  L ++E+RILE L+  RG  V+  Q    ++G
Sbjct: 123 ANKEMVELPNNYTYDLERFELRQNGEVVSLTKQEKRILELLIKQRGSIVSIEQFCDEVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E V+   +  HI+KLRK    K+G D + +   LGY ID
Sbjct: 183 ---EYVDPANIRVHITKLRK----KIGKDIIKNVHGLGYKID 217


>gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 239

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 18/200 (9%)

Query: 27  EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---HSQVPLIGISD 80
           EG++ +   + E+ L+    +DV      ++  G    E  R IR+   H   P+I +S 
Sbjct: 26  EGYDVIPVEDAEKALEELKDKDVDMFLVDIMLPGIDGFEFVRHIRSLEQHKLTPVIFLSA 85

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS----- 135
                  +   + G DD + KP   RE+LAR+ A++RR+++S    E  P ++ +     
Sbjct: 86  KGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRRMQLSTQTKEEKPKKIVAKDLEI 145

Query: 136 --DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D  + +++G+   L   E  +L +L  N GK  ++  +   ++G +D   +   V+ H
Sbjct: 146 DVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRNVLLDKLWG-YDYFGDTRTVDVH 204

Query: 194 ISKLRKKLRNKLGFDPVDSK 213
           I +LR K+      DP + K
Sbjct: 205 IRRLRTKIEE----DPSNPK 220


>gi|33594059|ref|NP_881703.1| putative two-component system response regulator [Bordetella
           pertussis Tohama I]
 gi|33564133|emb|CAE43405.1| putative two-component system response regulator [Bordetella
           pertussis Tohama I]
 gi|332383476|gb|AEE68323.1| putative two-component system response regulator [Bordetella
           pertussis CS]
          Length = 236

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 86/166 (51%), Gaps = 6/166 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL   R+ R  + +P++ ++    L   L  F  G DD + KP    E+ AR+ A+ 
Sbjct: 68  GHAVLHALRVER-RAALPVLMLTARDGLDDKLAGFAHGADDYLTKPFALAEVEARLLALI 126

Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +R +  V ++    GP++  S  R+  V G+   L R+   I+E L+ + G+ V++ Q+ 
Sbjct: 127 QRSRGAVVDSLRSFGPLQFDSATREVAVHGKPVHLTRKCGMIVEVLLRDPGRVVSREQLE 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +A++G  D+    + + S +  LR+ L +  GFD +++    G+ +
Sbjct: 187 NALWG--DDPPSSDALRSQVHLLRRALADA-GFDGIETVHGTGWRL 229


>gi|330808062|ref|YP_004352524.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376170|gb|AEA67520.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+      +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  + 
Sbjct: 63  LARLRARGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLG 122

Query: 123 NNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             R +  G +    D R   +  E+  L  RE+ +LE L+A  G+ ++K Q+ + ++GL 
Sbjct: 123 GERQQRCGGLVYDLDTRRFTLDDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFGL- 181

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE    + +E ++ +LRKKL
Sbjct: 182 DEEASPDAIEIYVHRLRKKL 201


>gi|167756093|ref|ZP_02428220.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402]
 gi|167704085|gb|EDS18664.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402]
          Length = 227

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 13/222 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA----IEAFLIGK 56
           +FV+ DD  + +   +AL  +      G+  ++F+  + + A  D  A    I   ++ K
Sbjct: 5   IFVVEDDENIREIINLALVSN------GYEVVQFDNAIDALAEIDKKAPSLAIFDLMLPK 58

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +  +  I    S++P++ +S        ++  DSG DD + KP    E+ ARV ++ 
Sbjct: 59  MSGIDAIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLL 118

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR  V+++   T  + V    R  ++  +   L  +E ++L YLM N+ + V + ++ + 
Sbjct: 119 RR-HVTSDIIRTKHLTVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNE 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I+G +D   E   ++ HI  LR KL N  G   + + R +GY
Sbjct: 178 IWG-YDFIGESRALDVHIRALRSKL-NDDGHKYIKTIRSVGY 217


>gi|15964775|ref|NP_385128.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307309662|ref|ZP_07589314.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307319459|ref|ZP_07598886.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15073953|emb|CAC45594.1| Probable response regulator [Sinorhizobium meliloti 1021]
 gi|306894831|gb|EFN25590.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899874|gb|EFN30497.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 233

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 1   MFVLIDDRALVKDGYIA-LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M +LI +  L    Y+A  F + G+  +  +  E   ++ S    DV  ++  L  +   
Sbjct: 5   MKILIVEDDLEAAAYLAKAFREAGIVCDHASDGESGLFMASENAYDVLVVDRMLPRRDGL 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L +  + R     P++ +S    +   +    +G DD + KP    E+LARV  + RR 
Sbjct: 65  SL-ITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRK 123

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +         QG+  PL  RE R+LEYLM N G+ V +T +   +
Sbjct: 124 GAPEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENV 183

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           +   FD   + NV++ H+S+LR K+     FDP  + + R  GY I
Sbjct: 184 WDYHFDP--QTNVIDVHVSRLRSKIEKD--FDPPLLRTIRGAGYMI 225


>gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 236

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 15/214 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F       E   + +  E ++    E+   I   L+  G   L
Sbjct: 4   ILIVDDEKPISD--IIKFNLTKEGYETVTAFDGREAIEKFEEENPDLIILDLMLPGLDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       SN+    G +++  D    + +GE   L  RE  +L +L  + G+ + 
Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIED 214


>gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 239

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 24/216 (11%)

Query: 10  LVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+G+ +   GD G +L  F ++            D+  ++  L GK    + + R IR
Sbjct: 33  LTKEGWSVTTCGDGGRALTAFRAVN----------PDLVLLDVMLPGKDG--MSVCREIR 80

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAE 127
           A S VP+I ++        +   ++G DD V KP   +E+LAR  A  RR       +  
Sbjct: 81  AESGVPIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRRYTPPQQAQLA 140

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +       + QGE+ PL   E  +L  L     + +++  +   ++G +  A + 
Sbjct: 141 VGDLTIDVQSHIVQRQGEIIPLTPLEFDLLVALARKPMQVLSRETLLEQVWG-YQHAGDT 199

Query: 188 NVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            +V  H+ +LR K+ +    DP     V + R +GY
Sbjct: 200 RLVNVHVQRLRAKIES----DPENPTIVQTVRGVGY 231


>gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
 gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 15/169 (8%)

Query: 47  SAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
            A E FL  K + VL    LP I        IR  S +P+I ++        +   + G 
Sbjct: 40  EAQEGFLEYKPDLVLLDIMLPHIDGVDVLKWIRKDSTIPIIMLTAKGDTFDKVLALELGA 99

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRR 152
           DD + KP   +E+LARV A+ RR  V N   E      + V  +      + +   +P +
Sbjct: 100 DDYIVKPFEPKELLARVKAVLRRYNVDNENKEALNFEQLTVDVNSYTVVYKNKEIKMPPK 159

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           E  +L YL  N+ +   + Q+   ++G +D   +   V+ HI +LR+KL
Sbjct: 160 EFELLYYLAKNKNRVFTREQLLCEVWG-YDYPGDSRTVDVHIKRLREKL 207


>gi|170769433|ref|ZP_02903886.1| heavy metal response regulator [Escherichia albertii TW07627]
 gi|170121757|gb|EDS90688.1| heavy metal response regulator [Escherichia albertii TW07627]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 3/160 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   + P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKKTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
            N+  E   +++ S  ++         L R+E ++L  L +  G+ + +T I S ++G+ 
Sbjct: 121 LNSTLEISGLKMDSVSQNVSRDNVNITLTRKEFQLLWLLASRAGEIIPRTVIASEVWGIN 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + N V+  I +LR K+ +      + + R +GYS+
Sbjct: 181 FDS--DTNTVDVAIRRLRAKVDDPFNEKLIATIRGMGYSL 218


>gi|149195027|ref|ZP_01872119.1| RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM [Caminibacter
           mediatlanticus TB-2]
 gi|149134740|gb|EDM23224.1| RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM [Caminibacter
           mediatlanticus TB-2]
          Length = 138

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 14/147 (9%)

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG 137
           IS    ++   + F+ G +D + KP  + E+  R+  I++    ++N   +    +  D 
Sbjct: 3   ISGNTDVKNIKEAFNLGAEDFIKKPFDYEELSIRIKKIFK----NHNEIISINKEILYDK 58

Query: 138 RDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
            +    +   + PL ++E ++LE L+ NRGK V+ + + + ++       E+NV  + ++
Sbjct: 59  TNKNLIIDNNIIPLTKKESQLLEILLQNRGKVVSNSALINFLW-------EDNVSLNTLN 111

Query: 196 KLRKKLRNKLGF-DPVDSKRFLGYSID 221
            L K+LR KLG  D + +KR LGY I+
Sbjct: 112 VLVKRLRKKLGCKDIIKTKRDLGYIIE 138


>gi|329924666|ref|ZP_08279681.1| response regulator protein GraR [Paenibacillus sp. HGF5]
 gi|328940500|gb|EGG36822.1| response regulator protein GraR [Paenibacillus sp. HGF5]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 13/162 (8%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R+IR+HS VP+I +S  D+P+    +     G DD + KP H   ++A++ A  RR+   
Sbjct: 65  RMIRSHSNVPIIFLSSRDHPT--DMVMSMQLGADDFIQKPFHFDVLIAKIQATLRRVYNY 122

Query: 123 NN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           N      R   G    F        QG    L + E  IL+ LM  + + V++  +  ++
Sbjct: 123 NTERTELRTWRGATVEFGKNTISSPQGTA-ELTKNEMFILKILMERKNQIVSREDLIKSL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +   +  V +N +  ++++LRKKL   LG DP +++K   GY
Sbjct: 182 WD-NEHFVSDNTLTVNVNRLRKKLE-PLGLDPYIETKVGQGY 221


>gi|238923747|ref|YP_002937263.1| phosphate regulon transcriptional regulatory protein [Eubacterium
           rectale ATCC 33656]
 gi|238875422|gb|ACR75129.1| phosphate regulon transcriptional regulatory protein [Eubacterium
           rectale ATCC 33656]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 6/130 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPR 151
           G +D + KP   RE++ARV  ++ R K  ++ +    G I    D ++    G++  L  
Sbjct: 93  GAEDYITKPFSVRELVARVNRVFLRRKSDDSSSVIHAGSISYDLDKKEARRDGQLIALSS 152

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
            E RIL+ L  N  K V++  +   I+    EA   +V +  ++   K++R KLG + + 
Sbjct: 153 LENRILDLLFTNHDKAVSRNAVLDCIW----EATGNDVYDHTVTVYMKRIRAKLGENVIK 208

Query: 212 SKRFLGYSID 221
           + + +GY +D
Sbjct: 209 TVKGIGYRVD 218


>gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 227

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 17/205 (8%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQV-PLIGIS 79
           LEFE +    A+    A+E F  G  + +L           E+ R IR  + V P+I ++
Sbjct: 22  LEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLEVLRRIRLKNAVIPIILLT 81

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFS 135
              S+   +   D G  D + KP    E+LAR+ A  R   V     N+  +   + +  
Sbjct: 82  ARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNVVKEEQNSSYQIADLYLDE 141

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
             R+ +    +  L  RE  +L +LM +  + + + QI + ++G FD   + NVV+ +I 
Sbjct: 142 KTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNVWG-FDYYGDTNVVDVYIR 200

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220
            LRKK+   +    + + R +GY +
Sbjct: 201 YLRKKVDCNVDVPLIHTVRGVGYVL 225


>gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 239

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR K+                   +++  +  +   Q
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVKEASDEESITLAELKILPEFYEAYFQ 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202
           G    L  +E  +L YL  N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233


>gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium ulcerans Agy99]
 gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans
           Agy99]
          Length = 232

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 19/200 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R+L  +GY      DGV      +LE    + +S R D   ++  +       LE+ R +
Sbjct: 20  RSLSFNGYTVELAHDGV-----EALE----MIASDRPDALVLDVMM--PRLDGLEVCRQL 68

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K+ ++ A
Sbjct: 69  RSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKLEDDEA 128

Query: 127 ETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  FSD     V  EV        L R E  +LE L+AN  + + +++I   ++G 
Sbjct: 129 ADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILEEVWG- 187

Query: 181 FDEAVEENVVESHISKLRKK 200
           FD     N +E ++  LR+K
Sbjct: 188 FDFPTSGNALEVYVGYLRRK 207


>gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR   + P+I I+        +   + G DD + KP   +E+LARV A+ RR  
Sbjct: 65  IDILKWIRKQKETPVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLRRYS 124

Query: 121 VSNNRAETGPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N + E   +   S D    +V    E   +P +E  +L YL  N+ K   + Q+   +
Sbjct: 125 SENIKNEVIKLSDLSIDSTSYKVIYNEEEIKMPPKEFELLYYLANNKNKVFTREQLLCEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G +D   +   V+ HI +LR+KL
Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKL 207


>gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
 gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
          Length = 235

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 20/219 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ ++ E    +   ++  G+  LE+ R IR 
Sbjct: 23  LEKEGFEIVMAHDG-----------DEAIEKASEEQPDMVLLDIMLPGKDGLEVCREIRK 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 72  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 131

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI +  +      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 132 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 190

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 191 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|257459047|ref|ZP_05624166.1| transcriptional activator protein CopR [Campylobacter gracilis
           RM3268]
 gi|257443432|gb|EEV18556.1| transcriptional activator protein CopR [Campylobacter gracilis
           RM3268]
          Length = 220

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 9/219 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++ D         G  + G  S +    L      D+   +  +IG G     
Sbjct: 5   LIVEDEGMLLDMMCTYMRGAGHEVGGSKSYDEALSLAYEKSFDLWIFDVKIIG-GNGFAL 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +  A    P I  +   +LQ     F SG DD + KP   +E+  R   + +R  V 
Sbjct: 64  LRELREAGRGAPCIFTTSLNTLQDVESGFRSGCDDYLKKPFELKELALRADNLLKRTFVH 123

Query: 123 N--NRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           N   R   G    F   +      + + P+P+++ R+L  L+ NR K ++K +IF+A++ 
Sbjct: 124 NAARRENIGGNFSFDMAQRALYHADRLVPMPQKQARLLALLLKNRDKLLSKDEIFAALWD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +DE+  E  +  +I++LRK     LG D + +   LGY
Sbjct: 184 -YDESPSELSLRVYIAELRK----ILGKDRIINASKLGY 217


>gi|146341965|ref|YP_001207013.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146194771|emb|CAL78796.1| putative Two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
          Length = 221

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R   A   +P++ ++   S    +D  D+G DD + KP  + E+LAR+ AI RR    
Sbjct: 63  LKRWRGAGRHMPVLILTARASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRR---- 118

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +     P+    D    E Q +V        L + E R++ YL+ + G+ V + ++   
Sbjct: 119 -SAGHAAPVLSSGDLALDERQMKVSLSGVPVALSQLEYRLIAYLLRHNGRVVPQHELEEN 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YGL  +  + N +E  I ++RK    KLG D ++++R  GY I
Sbjct: 178 VYGLGHDH-DSNALEVLIRRVRK----KLGADIIETRRGFGYMI 216


>gi|322437589|ref|YP_004219679.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165482|gb|ADW71185.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 229

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           + P + ++     ++ +   ++G DD + KP    E++AR  A+ RR   V+      G 
Sbjct: 73  KTPTLILTARAERESIVALLNAGADDYLTKPFDLGELIARAKALIRRSTGVAAPSIRLGE 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V +  +     G + PL   E RILEYL+      V+K Q+   +Y  F+     NV+
Sbjct: 133 LEVDTLQQTVSRAGTLIPLSPMEYRILEYLIHRPRIIVSKRQLLEHMYD-FNWEHHSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           E+H+S LR+KL +  G +PV ++ R  GY +
Sbjct: 192 EAHLSNLRRKL-DPSGSEPVIETLRGRGYRL 221


>gi|284037439|ref|YP_003387369.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816732|gb|ADB38570.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 230

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 11/168 (6%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA    +P+I ++    ++  ++    G DD + KP   RE++ARV A  RR  
Sbjct: 62  EVCRSVRAEKPNLPIIMLTALGEIEDKVEGLGLGADDYLVKPFDIRELIARVEACLRRST 121

Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +                + V S  R+ +       L  RE  +LEYL+ NRG+ +AK  I
Sbjct: 122 LLEEMTAEPEKVWRVANLTVDSASREVKRGETTIDLTAREFALLEYLIRNRGRVMAKLDI 181

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++ L FD     NVVE +I+ LRKK+        + ++  +GY +
Sbjct: 182 TEQVWNLNFDPTT--NVVEVYINYLRKKIDRDFEPKLIHTRPGMGYVL 227


>gi|254822956|ref|ZP_05227957.1| two component response transcriptional regulatory protein prra
           [Mycobacterium intracellulare ATCC 13950]
          Length = 223

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 15/207 (7%)

Query: 23  GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75
           G+ L GF    +++  E L+S+     +  +A ++     VL+   ++ A     + VP+
Sbjct: 16  GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 72

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131
             +S   S+   +   ++G DD + KP    E++ARV A+ RR    + + +ET   GP+
Sbjct: 73  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+
Sbjct: 133 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I  LR+KL    G   + + R +G+
Sbjct: 192 VFIGYLRRKLEAHGGPRLLHTVRGVGF 218


>gi|224372441|ref|YP_002606813.1| DNA-binding response regulator [Nautilia profundicola AmH]
 gi|223589062|gb|ACM92798.1| DNA-binding response regulator [Nautilia profundicola AmH]
          Length = 219

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 8/164 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G    ++ + IR  S  P+I I+   S +     F SG DD + KP   +E+  R+ AI 
Sbjct: 58  GMNGFDVAKEIRKFSDTPIIFITSLDSEKDIEKGFLSGGDDYIRKPFSLKELKLRIDAIL 117

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR+  ++ + + G    F D +  E+   GE   L  +  ++L   + +RG+ + K +IF
Sbjct: 118 RRMYGNSEKVDLGEGFEF-DVKSMELLKNGEPVHLKTKVAKLLNLFIKHRGEVLDKEKIF 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           S IY       EE   E+ +    K LR+ LG D +++ + +GY
Sbjct: 177 SEIYD-----YEETPNEASLRTFVKTLRSILGNDKIETIKDVGY 215


>gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
 gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
          Length = 227

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 17/205 (8%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQV-PLIGIS 79
           LEFE +    A+    A+E F  G  + +L           E+ R IR  + V P+I ++
Sbjct: 22  LEFEGYESEIAKTGTEAMENFENGNWDLILLDVMLPNISGLEVLRRIRLKNAVIPIILLT 81

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFS 135
              S+   +   D G  D + KP    E+LAR+ A  R   V     N+  +   + +  
Sbjct: 82  ARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNVVKEEENSSYQIADLYLDE 141

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
             R+ +    +  L  RE  +L +LM +  + + + QI + ++G FD   + NVV+ +I 
Sbjct: 142 KTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNVWG-FDYYGDTNVVDVYIR 200

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220
            LRKK+   +    + + R +GY +
Sbjct: 201 YLRKKVDCNVDVPLIHTVRGVGYVL 225


>gi|16766096|ref|NP_461711.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56414742|ref|YP_151817.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62181286|ref|YP_217703.1| tricarboxylic transport: regulatory protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161615674|ref|YP_001589639.1| hypothetical protein SPAB_03459 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552720|ref|ZP_02346472.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167992501|ref|ZP_02573599.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233741|ref|ZP_02658799.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238695|ref|ZP_02663753.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244578|ref|ZP_02669510.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262111|ref|ZP_02684084.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168464100|ref|ZP_02698017.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822904|ref|ZP_02834904.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444892|ref|YP_002042026.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450259|ref|YP_002046745.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194472936|ref|ZP_03078920.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194737394|ref|YP_002115739.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197266024|ref|ZP_03166098.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197363670|ref|YP_002143307.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198242096|ref|YP_002216758.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200386900|ref|ZP_03213512.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929393|ref|ZP_03220467.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353737|ref|YP_002227538.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858053|ref|YP_002244704.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|238909555|ref|ZP_04653392.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|325530291|sp|E1WA34|TCTD_SALTS RecName: Full=Transcriptional regulatory protein tctD
 gi|325530292|sp|P0CL17|TCTD_SALTY RecName: Full=Transcriptional regulatory protein tctD
 gi|11128401|gb|AAG31204.1|AF020810_5 TctD [Salmonella enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|295218|gb|AAA27232.1| membrane associated regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16421333|gb|AAL21670.1| tricarboxylic transport regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56128999|gb|AAV78505.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128919|gb|AAX66622.1| tricarboxylic transport: regulatory protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161365038|gb|ABX68806.1| hypothetical protein SPAB_03459 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403555|gb|ACF63777.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408563|gb|ACF68782.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194459300|gb|EDX48139.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712896|gb|ACF92117.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633172|gb|EDX51586.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095147|emb|CAR60696.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197244279|gb|EDY26899.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288507|gb|EDY27884.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197936612|gb|ACH73945.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603998|gb|EDZ02543.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321112|gb|EDZ06312.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273518|emb|CAR38501.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205322727|gb|EDZ10566.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329319|gb|EDZ16083.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332210|gb|EDZ18974.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336574|gb|EDZ23338.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340766|gb|EDZ27530.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349080|gb|EDZ35711.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709856|emb|CAR34209.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247926|emb|CBG25759.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994894|gb|ACY89779.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159349|emb|CBW18867.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913807|dbj|BAJ37781.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087188|emb|CBY96954.1| Response regulator mprA Mycobacterial persistence regulator A
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223577|gb|EFX48642.1| Tricarboxylate transport transcriptional regulator TctD [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322614392|gb|EFY11323.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621543|gb|EFY18396.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624404|gb|EFY21237.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626602|gb|EFY23407.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633538|gb|EFY30280.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638419|gb|EFY35117.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639722|gb|EFY36406.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322643768|gb|EFY40318.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649454|gb|EFY45888.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655956|gb|EFY52256.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661351|gb|EFY57576.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662549|gb|EFY58757.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666923|gb|EFY63098.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671293|gb|EFY67416.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677700|gb|EFY73763.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681473|gb|EFY77503.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322683872|gb|EFY79882.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322715771|gb|EFZ07342.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323131137|gb|ADX18567.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323193739|gb|EFZ78942.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197473|gb|EFZ82610.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203288|gb|EFZ88317.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205234|gb|EFZ90209.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212753|gb|EFZ97564.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218105|gb|EGA02817.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221632|gb|EGA06045.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227156|gb|EGA11330.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230868|gb|EGA14986.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234781|gb|EGA18867.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238820|gb|EGA22870.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241520|gb|EGA25551.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248333|gb|EGA32269.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252901|gb|EGA36735.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256977|gb|EGA40686.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260548|gb|EGA44159.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264394|gb|EGA47900.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269528|gb|EGA52981.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624516|gb|EGE30861.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326628844|gb|EGE35187.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332989661|gb|AEF08644.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 224

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 19/218 (8%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65
           ++ALV++G    F  D V    F+ L  +  L S    ++ A+    I   G   LE+ +
Sbjct: 17  EKALVQNG----FAVDCV----FDGLAADHLLHS----EMYALAVLDINMPGMDGLEVVQ 64

Query: 66  IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
            +R   Q +P++ ++   ++   +   + G DD + KP    E+ AR+ A+ RR     +
Sbjct: 65  RLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGQVH 124

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             +     +F D     +QG+   L  RE+ +L  LM  R + V++ Q+F  ++ L DE 
Sbjct: 125 EVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEV 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             E+ +E +I +LRKKL+   G D  + + R LGY ++
Sbjct: 185 SPES-IELYIHRLRKKLQ---GSDVRITTLRGLGYVLE 218


>gi|154244160|ref|YP_001415118.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158245|gb|ABS65461.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 233

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +    +G DD V KP    E+LARV A+ R
Sbjct: 62  IELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLR 121

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K  +       G I +  +       G    L   E R+LE+LM + G+  ++ Q+  
Sbjct: 122 RAKPEHVATLLRAGDIELDRETHRVHRAGREVHLGPTEFRLLEFLMQSPGRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS +
Sbjct: 182 GVWGQ-DVYIDERTVDVHVGRLRKAINRGRQSDPIRTVRGAGYSFN 226


>gi|319776032|ref|YP_004138520.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3047]
 gi|329123190|ref|ZP_08251759.1| two component response regulator [Haemophilus aegyptius ATCC 11116]
 gi|317450623|emb|CBY86843.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3047]
 gi|327471535|gb|EGF16979.1| two component response regulator [Haemophilus aegyptius ATCC 11116]
          Length = 220

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 94/201 (46%), Gaps = 4/201 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L    G +V
Sbjct: 3   ILLIEDDNLIGNGLQIGLTTLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R    H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LQQWR--SNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRYG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++  E   +++  + R   +  +   L  RE ++LE  M N+ + ++++ I   +   
Sbjct: 121 YHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS- 179

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +DE +    ++ HI  LR+KL
Sbjct: 180 WDEEISSGALDVHIYNLRQKL 200


>gi|319896803|ref|YP_004134997.1| transcriptional regulatory protein qseb [Haemophilus influenzae
           F3031]
 gi|317432306|emb|CBY80659.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3031]
          Length = 220

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 94/201 (46%), Gaps = 4/201 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L    G +V
Sbjct: 3   ILLIEDDNLIGNGLQIGLTTLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R    H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LQQWR--SNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRYG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++  E   +++  + R   +  +   L  RE ++LE  M N+ + ++++ I   +   
Sbjct: 121 YHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS- 179

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +DE +    ++ HI  LR+KL
Sbjct: 180 WDEEISSGALDVHIYNLRQKL 200


>gi|120435181|ref|YP_860867.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117577331|emb|CAL65800.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 225

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRV 133
           +I +S   SL   +   D+G DD + KP H  E+ ARV A+ RR K   +     G + +
Sbjct: 75  VIIVSARNSLDDRIQGLDTGADDYIAKPFHMAELNARVKALLRRKKFDGSVLFNIGNLHI 134

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVES 192
            S+      +     L R+E  IL YL  N+ + V+K+ +   ++G   D+A     + S
Sbjct: 135 DSEKHTSYTEFGEMELNRKEFDILTYLATNQNRLVSKSALAEHVWGDHIDQADNFEFIYS 194

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I  LRKKL++ +    + +   +GY +
Sbjct: 195 QIKNLRKKLKDVMAEVEIKAIYGIGYKL 222


>gi|154492635|ref|ZP_02032261.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC
           43184]
 gi|154086940|gb|EDN85985.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC
           43184]
          Length = 228

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 8/137 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           + +P+I ++   +    L  F+ G DD ++KP   R+++ARV A+ RR        E   
Sbjct: 75  ADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVLRRTSDKEKVPENEC 134

Query: 131 IRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA- 184
           ++  +   D +     V G+  PL ++E  IL+ L+ N+G   ++ +I S I+   DE  
Sbjct: 135 LKYETLSLDTKRIKASVDGQEVPLTKKEFEILKLLLENKGNVFSREEILSRIWK--DEVY 192

Query: 185 VEENVVESHISKLRKKL 201
           V +  ++ +I++LRKK+
Sbjct: 193 VLDRTIDVNITRLRKKI 209


>gi|109898617|ref|YP_661872.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109700898|gb|ABG40818.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 244

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L+DD   +         ++G  +E  +S     E  LQS   ++   +   ++  G  
Sbjct: 8   ILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQS---DEFDTVVLDIMMPGMS 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L++ R +RA  QVP++ ++        +   + G DD + KP + RE+ AR+ AI RR 
Sbjct: 65  GLDVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRRT 124

Query: 120 KVSNNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + S      G          I + +  R   V     PL   E   L  LM   G+ + K
Sbjct: 125 ENSLGNGAAGKTIVHALLHGIELDTGTRTAVVNNTTLPLTSAEFNALSLLMERAGQTITK 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   +     EA +   ++ HIS++R+KL ++   D + S R +GY +
Sbjct: 185 QDMTQEVLNRPLEAYDR-AMDVHISRIRQKLSSQGINDVIKSIRGVGYQM 233


>gi|114562310|ref|YP_749823.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114333603|gb|ABI70985.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 227

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETG 129
           P+I ++   S Q  +   D+G DD ++KP    E++AR+ A+ RR   S  +A    + G
Sbjct: 74  PIIILTARDSWQDKVVGLDAGADDYLSKPFQLEELVARINALIRR---SAGKASPVIQNG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  + +   + +   ++  L   E ++ EYLM + G   +K+ +   IY   D  ++ NV
Sbjct: 131 PFSINTRSLEIKKSLQIINLSGSEYKLFEYLMLHPGSVHSKSSLIEHIYDQ-DFDLDSNV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E  I +LRKKL     +  +++ R  GY +
Sbjct: 190 IEVFIRRLRKKLDPDNQYQLIETLRGQGYRL 220


>gi|268609373|ref|ZP_06143100.1| DNA-binding response regulator [Ruminococcus flavefaciens FD-1]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 3/152 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R ++ +P++ +S    L      F  G+DD + KP+   E+  RV A+ RR  ++ ++  
Sbjct: 69  RLNANIPILFLSARDDLSAKEKGFRLGIDDYMVKPVELAELEMRVRALLRRANIAESKKL 128

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           T G + +  D     V GE  PL  RE  IL  L++   K  ++ Q+    +G+ D    
Sbjct: 129 TVGDLTLDGDAMTGTVNGEELPLSTREFNILFKLLSYPNKTFSRAQLMDEFWGM-DSDAS 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              V+ +I++LR K     G + + + R +GY
Sbjct: 188 LRSVDVYITRLRDKTSVCTGLE-IKTIRGIGY 218


>gi|237734077|ref|ZP_04564558.1| signal transduction regulator [Mollicutes bacterium D7]
 gi|229382903|gb|EEO32994.1| signal transduction regulator [Coprobacillus sp. D7]
          Length = 229

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 13/222 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA----IEAFLIGK 56
           +FV+ DD  + +   +AL  +      G+  ++F+  + + A  D  A    I   ++ K
Sbjct: 7   IFVVEDDENIREIINLALVSN------GYEVVQFDNAIDALAEIDKKAPSLAIFDLMLPK 60

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +  +  I    S++P++ +S        ++  DSG DD + KP    E+ ARV ++ 
Sbjct: 61  MSGIDAIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLL 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR  V+++   T  + V    R  ++  +   L  +E ++L YLM N+ + V + ++ + 
Sbjct: 121 RR-HVTSDIIRTKHLTVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNE 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I+G +D   E   ++ HI  LR KL N  G   + + R +GY
Sbjct: 180 IWG-YDFIGESRALDVHIRALRSKL-NDDGHKYIKTIRSVGY 219


>gi|210612025|ref|ZP_03289141.1| hypothetical protein CLONEX_01340 [Clostridium nexile DSM 1787]
 gi|210151783|gb|EEA82790.1| hypothetical protein CLONEX_01340 [Clostridium nexile DSM 1787]
          Length = 243

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 2/141 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + ++   ++P I ++     +  L  FD+G  D V KP   + ++ R+  + +R  
Sbjct: 80  IELYQELQMEKRIPAIFLTARDEEKEMLLAFDAGAQDYVVKPFSMKVLMKRLEVVLKR-- 137

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + ++ D +          L  +E ++LEYLM N+G+ + K  I   I+G+
Sbjct: 138 NPEERYMVGELTLYPDRKQVFTGKTEISLTAKEYQLLEYLMRNQGQVLTKENILETIWGV 197

Query: 181 FDEAVEENVVESHISKLRKKL 201
             + V +N V   I++LR+K+
Sbjct: 198 DGQFVVDNTVSVTINRLRRKI 218


>gi|187926390|ref|YP_001892735.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|241665877|ref|YP_002984236.1| transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728144|gb|ACD29308.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240867904|gb|ACS65564.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 219

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 3/170 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G+  LE+ R +RA S+VP++ ++        L   + G DD V KP   RE++AR+
Sbjct: 51  LMLPGKDGLEICREVRAFSEVPIVMVTARVEEIDRLLGLELGADDYVCKPFSPRELVARI 110

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I RR++      E+  + + +      ++G+   L   E R+L  L    G+ ++++ 
Sbjct: 111 KTILRRVQRGGGVPESA-LHIDAAAYAATLRGQRLDLTPVEFRLLAALAGAPGRILSRSN 169

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +   IY      V +  V++HI  LR+K+     G + + S   +GY +D
Sbjct: 170 LLEQIYD-DHRIVTDRTVDTHIKNLRRKMEQVSPGTEMIHSVYGVGYRLD 218


>gi|83747585|ref|ZP_00944622.1| probable two-component response regulator [Ralstonia solanacearum
           UW551]
 gi|207725031|ref|YP_002255428.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207738626|ref|YP_002257019.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83725765|gb|EAP72906.1| probable two-component response regulator [Ralstonia solanacearum
           UW551]
 gi|206590261|emb|CAQ37222.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206591994|emb|CAQ58900.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 226

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 17/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++I+D A V D     F   G+  EG+  L      E LQ +   + + +   L+  G 
Sbjct: 3   ILVIEDDARVSD-----FLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGM 57

Query: 59  KVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LEL + +RA  + VP++ ++    +   +     G DD + KP    E+LAR+ A+ R
Sbjct: 58  SGLELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLR 117

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R +    R +   ++V     D E       G+  PL  +E   LE LM+  G+  ++ +
Sbjct: 118 RGR--EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRER 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I S ++G  ++ +  N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 176 ILSNVWGANEDPL-TNIVDVYVRRLRSKIDEGHPVPLLKTVRGLGYRLD 223


>gi|95928665|ref|ZP_01311412.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135455|gb|EAT17107.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 233

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 23/230 (10%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + VL DD A   DG +    +DG S   +++    E +     E V   E  +I   E  
Sbjct: 11  VLVLTDD-AQNCDGTVTCLSEDGFSPAVYHN---AEEILGVCEELVP--ELVVIDVAESS 64

Query: 61  LELP---RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L++    R +R     PL+ ++++      +   + G DD V KPI    + AR+ A+ R
Sbjct: 65  LDVASSCRFLREQYTGPLVVLAEHADEMFQVLGLEMGADDFVVKPISATLLRARIRAVLR 124

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +++    +     G + V S  R+    G+   L  +E  +L YL  +    +++ QI
Sbjct: 125 RRQLAETGEDATITLGSLEVDSGRREVSCGGKSVDLTSKEFDLLWYLARHARTVLSRDQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           + A++GL     E N V+  +     +LRNKLG DP     + + R +GY
Sbjct: 185 YEALFGL-----EYNGVDRSVDIYISRLRNKLGEDPSRPQLLKTVRGVGY 229


>gi|291446254|ref|ZP_06585644.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349201|gb|EFE76105.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 283

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 22/209 (10%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +  +A+ A             ++   + +  L R+ R ++ VP++ +
Sbjct: 74  ALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGLAVLGRLRREYADVPVLFL 133

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAET----GPIR 132
           +   +++  +    +G DD V KP    E++AR+  + RR    V+  R E+    G + 
Sbjct: 134 TARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGSAVAAGRGESTLTVGDLV 193

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  D  +    GE   +   E  +L +LM N  + ++K QI   ++  +D   + NVVE 
Sbjct: 194 LDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQILDRVWN-YDFGGQANVVEL 252

Query: 193 HISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +IS LRKK+    G  P + ++R  GY I
Sbjct: 253 YISYLRKKI--DAGRTPMIHTRRGAGYLI 279


>gi|212712385|ref|ZP_03320513.1| hypothetical protein PROVALCAL_03473 [Providencia alcalifaciens DSM
           30120]
 gi|212685131|gb|EEB44659.1| hypothetical protein PROVALCAL_03473 [Providencia alcalifaciens DSM
           30120]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 7/152 (4%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           ++   +P+I ++    +   +   DSG DD + KP    E+++RV AI RR+   S+   
Sbjct: 68  QSGESIPIIILTARNKMDNLVTSLDSGADDFLTKPFEMPELISRVKAISRRMAGFSSEIW 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +   +++        + G++  L  +E  +L  L+ N    V KT +   ++GL D  VE
Sbjct: 128 QLDNLQLNPLNHQVTLDGQLLLLSGKEYLLLYELIKNADNVVRKTDLEQRLFGLDD--VE 185

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            N +E HI  LR+    K+G D + + R +GY
Sbjct: 186 SNSLEVHIHNLRR----KIGKDRIITIRGIGY 213


>gi|148259593|ref|YP_001233720.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326402799|ref|YP_004282880.1| transcriptional regulatory protein OmpR [Acidiphilium multivorum
           AIU301]
 gi|146401274|gb|ABQ29801.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325049660|dbj|BAJ79998.1| transcriptional regulatory protein OmpR [Acidiphilium multivorum
           AIU301]
          Length = 240

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 16/195 (8%)

Query: 27  EGFNSLEFEEWLQSSAR---EDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+ + E +    + A     DV+ +   L+  GE  L L R IRA S VP+I ++    
Sbjct: 26  EGYGTREADSEAGTHAALLGGDVTLVLLDLMLGGEDGLALARAIRARSDVPIIMLTGKDD 85

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP------IRVFSDG 137
           +   +   ++G DD + KP H RE+LAR+ A+ RR+          P      IR     
Sbjct: 86  VIDRVAGLEAGADDYIAKPFHLREVLARIRALKRRMTGRGTPEPAEPDPPEAVIRFDGHA 145

Query: 138 RDPEVQ------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            DP  +      G   PL   E  +L   + + G+ + + Q+ + + G   EA  + +V+
Sbjct: 146 LDPLGRTLRGRDGADIPLTTAEFELLAVFLRHAGRVLDRDQLLNLLKGRDFEAF-DRLVD 204

Query: 192 SHISKLRKKLRNKLG 206
           + + +LR+K+    G
Sbjct: 205 TQVMRLRRKIEQDPG 219


>gi|116671596|ref|YP_832529.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611705|gb|ABK04429.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP+I +S   + +  ++  D+G DD V KP    E+LAR+ A  RR  
Sbjct: 61  VEVIRGIRGWSSVPVIVLSARHASEDKVEALDAGADDYVTKPFGLDELLARLRAASRRSP 120

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   ET    V    R     G    L   E  ILE L+ N+GK V++ Q+ + ++
Sbjct: 121 AQREAPTVETADFVVDLAARKVVRDGHEIRLTPTEWNILELLVRNQGKLVSQQQLLTQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
           G    A E   +  ++++LR+KL      DP   +       +GY  D
Sbjct: 181 GQA-YAKETQYLRVYLAQLRRKLEQ----DPARPRHLHTEAGMGYRFD 223


>gi|317509412|ref|ZP_07967031.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316252335|gb|EFV11786.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 239

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+  +S   S+   ++  ++G DD + KP    E++ARV A+ RR   +N  A T    
Sbjct: 81  IPICVLSARSSVGDRIEGLEAGADDYLTKPFVLGELVARVKALLRRPSTTNRPAPTVEFG 140

Query: 133 VFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           V           GR   V  E   L +RE  +L  L  N G  +++T++   ++G +D A
Sbjct: 141 VIHVDYLSVDIPGRRVTVDDEPVELTKREFELLAALAENTGVVLSRTELLERVWG-YDFA 199

Query: 185 VEENVVESHISKLRKKLRNK 204
            + NVV+  +  LRKKL  K
Sbjct: 200 ADTNVVDVFVGYLRKKLELK 219


>gi|225024963|ref|ZP_03714155.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC
           23834]
 gi|224942294|gb|EEG23503.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC
           23834]
          Length = 221

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  ++ D       D G +++  N+         S   D+  ++  L G+ G  V
Sbjct: 3   ILLIEDDTMIADAVAGSLKDSGYAVDWINNGRTAVTAFGSQSYDLILLDLGLPGQDGLDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L+  R   + +  P++ ++    L + L   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LQQLR--GSGNTTPVLILTARDDLHSRLSGLDGGADDYLIKPFDMAELQARIRAVLRRQH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +N     G + +       E+ G+  P  L  +E  ILE L+   G  ++++ +   I
Sbjct: 121 QRANPLLGNGSLTLNPAAHQVEIVGQSEPVALSNKEFAILEALLQRPGTILSRSSLEDKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG + E VE N ++  I  LRK    K+G + + + R +G+ +
Sbjct: 181 YG-WGEEVESNAIDYLIHALRK----KIGKEHIKNIRGVGWMV 218


>gi|303234314|ref|ZP_07320954.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
 gi|302494567|gb|EFL54333.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
          Length = 226

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 17/152 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS------GVDDVVNKPIHHREILARVAAI 115
           E+ + IR  S +P++ +S        +D FD       G DD + KP   RE+LARV A 
Sbjct: 62  EICQNIRIKSTIPILILS------AKIDEFDKVKGLNLGADDYITKPFRPRELLARVNAQ 115

Query: 116 YRRLKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            RR +V N       +   IR+++     E  G    L R E  +L +L  N  +  ++ 
Sbjct: 116 LRRSQVFNKENLEIIDIENIRIYTKEYKVEKNGRDLDLSRNEFELLVFLSKNPKQVFSRE 175

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           Q++  I+G FD   + N V   I++LR+K+ +
Sbjct: 176 QLYERIWG-FDSYGDLNTVTVTINRLRQKIED 206


>gi|226946942|ref|YP_002802015.1| response regulator TctD [Azotobacter vinelandii DJ]
 gi|226721869|gb|ACO81040.1| response regulator TctD [Azotobacter vinelandii DJ]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 76/141 (53%), Gaps = 4/141 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+    ++VP++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  + 
Sbjct: 63  LARLRERGNRVPVLMLTARAEVKDRVQGLNLGADDYLAKPFELTELEARVKALLRRSVLG 122

Query: 123 NNRAETGPIRVF--SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             R +     V+  + GR   + GE   L  RE+ +L  L+A  G+ ++K Q+ S ++GL
Sbjct: 123 GERQQRCGELVYDLATGRFA-LAGEPLNLTAREQAVLSALIARPGRVMSKEQLASQVFGL 181

Query: 181 FDEAVEENVVESHISKLRKKL 201
            DE V  + +E +I +LR+KL
Sbjct: 182 DDE-VSPDAIEIYIHRLRRKL 201


>gi|226322434|ref|ZP_03797952.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758]
 gi|225209156|gb|EEG91510.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758]
          Length = 226

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D A +++  +      G    GF   E   + ++ A E    I   ++  GE  
Sbjct: 1   MIFCVEDEANIRELVVYTLETTGFEARGFE--EGTSFFEALAEELPELILLDIMLPGEDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ + ++   +   +P+I ++   +    +   D+G DD V KP    E+++R+ A+ R
Sbjct: 59  MEILKKLKTSGRTKDIPVIMVTAKGAEYDKVMGLDAGADDYVTKPFGMMELVSRIRAVLR 118

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   K  ++    G IR+     +  V GE   L  +E  +L  LM N+   + + ++  
Sbjct: 119 RTSKKEEDDTYVLGEIRMDRKKHEVTVAGEPVALTLKEYELLRKLMENQNIVLTRDKLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ H+  LR+KL     +  +++ R +GY I
Sbjct: 179 EIWG-YDFDGETRTVDVHVRTLRQKLGQAGEY--IETVRGVGYRI 220


>gi|210630068|ref|ZP_03296230.1| hypothetical protein COLSTE_00114 [Collinsella stercoris DSM 13279]
 gi|210160688|gb|EEA91659.1| hypothetical protein COLSTE_00114 [Collinsella stercoris DSM 13279]
          Length = 236

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 12/205 (5%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---HSQVPLIGIS 79
           G+  EGF S    E+  + AR    A+   ++      LE+ R +RA    + VP++ ++
Sbjct: 34  GIEAEGFAS--DSEFKAAVARRVPDAVLLDIMLPDTDGLEIMRRLRADQATATVPIMMLT 91

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFS 135
              S    +   D G DD + KP    E+ +R  A+ RR  +++  A    + G I +  
Sbjct: 92  AKDSELDKVVALDGGADDYLTKPFSLMELTSRCRALLRRGGMTSRPASETLQVGGIELSP 151

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
             R   V+G+   L  RE  +LEYLM   G    +  +  +++G +D       V+ H+ 
Sbjct: 152 SRRTVRVEGQELKLTLREFDLLEYLMRKPGVVFTRESLLQSVWG-WDFDGGSRTVDVHVQ 210

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220
            LR+KL +    D +++ R +GY +
Sbjct: 211 TLRQKLGDH--ADRIETVRGVGYRL 233


>gi|94967540|ref|YP_589588.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549590|gb|ABF39514.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L + +RA SQVP+I +S     +T +   D G DD + KP +  E+LAR+ A  RR  
Sbjct: 62  LALCKELRARSQVPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANLRRAP 121

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V+      E G   + +     +V+G    L  +E  +L YL  + GK V    + S+++
Sbjct: 122 VAEIATILELGDFVIDTAAHLVKVRGTEVRLTPKEFDLLLYLARHPGKVVPHRTLLSSVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           G  D A +   +   + +LRKK+  +      + ++R++GY
Sbjct: 182 GA-DHAEQSEYLRVFVGQLRKKIEGENSNKRYILTERWIGY 221


>gi|2245588|gb|AAB92482.1| IrlR [Burkholderia pseudomallei 1026b]
          Length = 229

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 17/217 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           + L + G+IA + +DGV+  G +  E EE+       D+  ++  L G  G  VLE  R+
Sbjct: 18  KGLTEAGFIADWVEDGVT--GLHQAETEEY-------DLIILDVMLPGHDGWTVLE--RL 66

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
            RAHS  P++ ++    +   +   + G DD V KP    E++ARV +I RR +   +  
Sbjct: 67  RRAHS-TPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQARESTV 125

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
                + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ + F+  
Sbjct: 126 LRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDMNFNS- 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + NVV++ I +LR K+ +      + + R +GY ++
Sbjct: 185 -DTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|85713650|ref|ZP_01044640.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
 gi|85699554|gb|EAQ37421.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
          Length = 234

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA     ++P+I ++        +    +G DD V KP    E+LARV ++ R
Sbjct: 62  IELCRRLRARPETKELPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLR 121

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   S  R  +    G I +  D       G    L   E R+LE+ + + G+  ++ Q+
Sbjct: 122 R--ASPARLASILTFGDIELDRDRHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 180 LNSVWG-RDVYIDERTVDVHIGRLRKLLNPDGEADPIRTVRGAGYALD 226


>gi|325122777|gb|ADY82300.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acinetobacter calcoaceticus PHEA-2]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
           +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + +  
Sbjct: 64  QVLRQFSRIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ + FD
Sbjct: 124 NELSISDLKMDVVGHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNINFD 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N ++  + +LR K+        + + R LGY I
Sbjct: 184 --TDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 219


>gi|300857140|ref|YP_003782124.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300437255|gb|ADK17022.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 238

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 22/168 (13%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP+I ++   S    L   + G DD + KP +   +LAR+  I +R    
Sbjct: 78  ICREIRKTSDVPIIIVTSRDSDADELISMNLGADDFITKPYNTEILLARITNILKRTYGN 137

Query: 119 LKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           LK SN       N   +    ++ D        +   L + E +IL YL+ NRG  V + 
Sbjct: 138 LKTSNILNYKDFNLNLSNATVIYKD--------KSLELTKNEVKILSYLINNRGSIVKRD 189

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            +   ++ + D  V+++ +  +I++LRKKL  ++G  +P++++R LGY
Sbjct: 190 LLMEYLWKV-DYFVDDSALTVNINRLRKKLE-EIGIKNPIETRRGLGY 235


>gi|300694393|ref|YP_003750366.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum PSI07]
 gi|299076430|emb|CBJ35746.2| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum PSI07]
          Length = 232

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 17/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++I+D A V D     F   G+  EG+  L      E LQ +   + + +   L+  G 
Sbjct: 9   ILVIEDDARVSD-----FLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGM 63

Query: 59  KVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LEL + +RA  + VP++ ++    +   +     G DD + KP    E+LAR+ A+ R
Sbjct: 64  SGLELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLR 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R +    R +   ++V     D E       G+  PL  +E   LE LM+  G+  ++ +
Sbjct: 124 RGR--EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRER 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I S ++G  ++ +  N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 182 ILSNVWGANEDPL-TNIVDVYVRRLRSKIDEGHPVPLLKTVRGLGYRLD 229


>gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 247

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 20/207 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +   A+               ++   + +  L R+ R    VP++ +
Sbjct: 40  ALRYEGWEVRSAGDGAGAVRTVREFRPDAVVLDIMLPDMDGLAVLGRLRREAPDVPVLFL 99

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134
           +   +++  +    +G DD V KP    E++AR+  + RR   +  R+E+    G + + 
Sbjct: 100 TARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGTAAVRSESLLAVGDLTLD 159

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +    G+   L   E  +L YLM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 160 EDSHEVTRGGQSIHLTATEFELLRYLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 218

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           S LR+K+    G  P + ++R  GY I
Sbjct: 219 SYLRRKI--DAGRPPMIHTRRGAGYLI 243


>gi|289450843|ref|YP_003474420.1| putative transcriptional regulatory protein CutR [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185390|gb|ADC91815.1| putative transcriptional regulatory protein CutR [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 226

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 6/162 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+   + ++ +I ++    +   +   D+G +D + KP H  E+ AR+ ++ RR +V 
Sbjct: 63  LERLRAVNKEIRVIILTARTDIDDLVRGLDTGANDYLVKPFHFVELEARIRSLLRRRQVQ 122

Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   T     F+   +     G    L  +E  ILEYL+ NRG+ V++ ++   ++   
Sbjct: 123 EDLLITCQGFSFNLKTKAVSCAGGELRLTSKELSILEYLLLNRGRHVSQEELLEHVW--- 179

Query: 182 DEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + E  N V  H+S LRKKL+   G   + ++   GY I+
Sbjct: 180 EDGMNEFSNTVRVHVSALRKKLKAATGRVVITNEIGRGYIIE 221


>gi|183984600|ref|YP_001852891.1| two-component response transcriptional regulatory protein PrrA
           [Mycobacterium marinum M]
 gi|183177926|gb|ACC43036.1| two-component response transcriptional regulatory protein PrrA
           [Mycobacterium marinum M]
          Length = 236

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 15/207 (7%)

Query: 23  GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75
           G+ L GF    +++  E L+S+     +  +A ++     VL+   ++ A     + VP+
Sbjct: 29  GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 85

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131
             +S   S+   +   ++G DD + KP    E++ARV A+ RR    + + +ET   GP+
Sbjct: 86  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPL 145

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+
Sbjct: 146 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 204

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I  LR+KL    G   + + R +G+
Sbjct: 205 VFIGYLRRKLEANGGPRLLHTVRGVGF 231


>gi|171779491|ref|ZP_02920455.1| hypothetical protein STRINF_01336 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282108|gb|EDT47539.1| hypothetical protein STRINF_01336 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ G DD + KP +  E+  R+ A+ +R  K ++N      +
Sbjct: 73  TPVLIMTAKESLNDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNDNTLSYHEL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              +      V G+   L  +E  +L Y + N+   + K+QIF  I+G FD     +VVE
Sbjct: 133 TADTSTNTTTVNGKKVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++SK+RKKL+       + + R +GY
Sbjct: 192 VYVSKIRKKLKGTSFAKNLQTLRSVGY 218


>gi|160894802|ref|ZP_02075576.1| hypothetical protein CLOL250_02352 [Clostridium sp. L2-50]
 gi|156863233|gb|EDO56664.1| hypothetical protein CLOL250_02352 [Clostridium sp. L2-50]
          Length = 226

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 92/202 (45%), Gaps = 3/202 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D  ++++   A+    G    G    E       +A  D+  ++  L G G    
Sbjct: 4   IAVVEDEDMMREELEAILQKAGYQTSGITDFENAAAAILAASPDLVLLDLNLPGMGG--F 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R ++  S +P++ ++    LQ  L   D G D+ + KP     +LARV+ + +R + 
Sbjct: 62  QICRELKQKSSIPVLVLTSRDQLQDELHALDLGADEFLTKPCRKERLLARVSNVLKRYEG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            NN  E     +        +      LP+ + +IL   + +    V K ++  A++G  
Sbjct: 122 RNNLLEGNGFLLDRQTYTLYIHNRSVILPQNQGKILGIFLEHGSDIVTKEELCIALWGT- 180

Query: 182 DEAVEENVVESHISKLRKKLRN 203
            E ++EN ++ ++++L+K + N
Sbjct: 181 AEFIDENALQVNLTRLKKTMAN 202


>gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 228

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 8/142 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR    +P+I +S        +    SG DD + KP +  E++ARV +  RR K  N   
Sbjct: 68  IREERNLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQLRRYKKYNTDT 127

Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 128 ISTANVIEIGDLTVNTDTRQVWVRGKEVRLTPKEFDILELLSRNKGIVMSVEKIYEAVWK 187

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             D    +N V  HI+K+R K+
Sbjct: 188 -EDFFKSDNTVMVHITKIRDKI 208


>gi|46810476|gb|AAT01619.1| PhoB [Pseudomonas stutzeri]
          Length = 229

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 101/213 (47%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  +       + + G++ LE E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIREMIVV-----ALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++     +  P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR    ++ +   PI +     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRATPVDSES---PIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRSQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|90423521|ref|YP_531891.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105535|gb|ABD87572.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 20/138 (14%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI------RVFSDGRDPEVQ 143
            D+G DD V KP    E++AR  A+ RRL +        G +      R    G+DP V 
Sbjct: 91  LDNGADDYVAKPFEPIELVARAKAVLRRLFLDKGAVVSIGNLSYDIINRAVYVGQDPIV- 149

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
                +PRRE  ILE ++   G+ V +  +  A YG FD+ ++ N VESH+S+LR++ R 
Sbjct: 150 -----VPRRELAILEAMVRRVGRVVLRETLEVAAYG-FDDDIQSNAVESHVSRLRRRFRE 203

Query: 204 ---KLGFDPVDSKRFLGY 218
              K+   PV   R LGY
Sbjct: 204 ANCKVTIRPV---RGLGY 218


>gi|75762016|ref|ZP_00741930.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74490502|gb|EAO53804.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 207

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 12/139 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AET--------GPIRVFSDGRDPEVQ 143
           G DD + KP   RE++ARV AI RR K+      AE           +++  +  +   Q
Sbjct: 64  GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVAEAPDEDSITIAELKILPEFYEAYFQ 123

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202
           G    L  +E  +L YL  N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 124 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 182

Query: 203 NKLGFDPVDSKRFLGYSID 221
           N      + + R LGY ++
Sbjct: 183 NTKKPTYIKTIRGLGYKLE 201


>gi|228925839|ref|ZP_04088923.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944403|ref|ZP_04106776.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815305|gb|EEM61553.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228833854|gb|EEM79407.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 242

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 135

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 136 TNQHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 237


>gi|162453154|ref|YP_001615521.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161163736|emb|CAN95041.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 234

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 25/213 (11%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRAHSQVPLIGIS 79
           +L+ E +  ++  +  +A+EA   G  + V           LE+ R +RA S+ P++ +S
Sbjct: 21  ALQKEGYAVTAVADGRAAVEAAGAGTVDLVVLDVMLPELDGLEVCRRLRAGSRTPILFLS 80

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---------SNNRAET-- 128
                   +   + G DD + KP   RE++ARV A+ RR +          +  RA    
Sbjct: 81  ARADEVDRIVGLELGGDDYLTKPFSPRELVARVRALLRRTEAPPPAPAPASTGARAAVLR 140

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GPI V ++  +    G+   L   E  +L  L+   G  +++ Q+    Y  +D  + E
Sbjct: 141 HGPIEVDTERHEARYLGQPVSLTATELGVLGALLERPGVVLSRGQLMQRAY-RYDNLITE 199

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +++H+ ++R K R  +G DP+ +   +GY +
Sbjct: 200 RTIDTHVRRIRAKFR-VVGGDPIATVHGVGYKL 231


>gi|163815716|ref|ZP_02207088.1| hypothetical protein COPEUT_01897 [Coprococcus eutactus ATCC 27759]
 gi|158449021|gb|EDP26016.1| hypothetical protein COPEUT_01897 [Coprococcus eutactus ATCC 27759]
          Length = 220

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD    ++ + +HI  +R K  +   + P+ +   +GY
Sbjct: 180 FDSESNDSTIITHIKNIRVKFAD-YDYTPIKTVWGIGY 216


>gi|221067401|ref|ZP_03543506.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712424|gb|EED67792.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 4/159 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R  R  SQVP++ ++   S++  +   + G DD + KP  + E+LARV  + RR  +   
Sbjct: 64  RRFRERSQVPVLFLTARDSVEDRVKGLELGADDYLIKPFSYAELLARVRTLLRRTPMRQQ 123

Query: 125 RA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
              +   + V    R     G+   L  +E  +L+ L+ ++G+ ++++QI S ++ + FD
Sbjct: 124 DIFQLADLEVDMLKRRAIRGGQRIDLTNKEFALLQLLLQHKGEVMSRSQIASQVWDMNFD 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + NVV+  I +LR K+ +      + + R +GY I+
Sbjct: 184 S--DTNVVDVAIRRLRAKIDDGFAVKLIQTVRGMGYRIE 220


>gi|325519076|gb|EGC98569.1| OmpR family two-component system response regulator [Burkholderia
           sp. TJI49]
          Length = 220

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LASLRRRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVNRR---H 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             RA+T    G +R+        +  +  PL  +E  +L  LM + G  +++ Q    +Y
Sbjct: 120 AGRAQTTLAIGALRLDPVKHQVWLNDDEVPLSPKEFVLLHELMRDPGAVISREQFEERLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + E +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216


>gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 232

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 23/233 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLI-GKGE 58
           + V+ DD ALV  G       DG  +    S+  E W   S  R D+  ++  L  G G 
Sbjct: 4   LLVVEDDPALVT-GLRYSMEKDGFQVRTAGSVR-EGWQAFSQDRPDLVVLDVGLPDGTG- 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              +L R IR  +  P++ ++        +   D G DD + KP   RE+L+RV A+ RR
Sbjct: 61  --FDLCRQIRVENGTPILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALLRR 118

Query: 119 LKVSNNRAETGPIRVFSDGR---DPEV-----QGEVFPLPRRERRILEYLMANRGKRVAK 170
                  +   P++    G    D E       GE   L   E R+L  LM N G+ + +
Sbjct: 119 -------SADKPVKTLVSGAVTLDTEEAHVCRNGEEISLTPAEYRLLRLLMQNEGRTLTR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            Q+   ++    + V+EN +  +I +LR K+ +     PV      G    W 
Sbjct: 172 EQLLDTLWDSGGDFVDENTLSVYIRRLRAKIEDNPS-SPVHIHTVRGVGYRWK 223


>gi|240172200|ref|ZP_04750859.1| two component response transcriptional regulatory protein prra
           [Mycobacterium kansasii ATCC 12478]
          Length = 233

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 15/207 (7%)

Query: 23  GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75
           G+ L GF    +++  E L+S+     +  +A ++     VL+   ++ A     + VP+
Sbjct: 26  GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131
             +S   S+   +   ++G DD + KP    E++ARV A+ RR    + + +ET   GP+
Sbjct: 83  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPL 142

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+
Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 201

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I  LR+KL    G   + + R +G+
Sbjct: 202 VFIGYLRRKLEANGGPRLLHTVRGVGF 228


>gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 236

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 11/137 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQ--GEVFPL 149
           G DD V KP    E++AR+ AI RR   ++ +N A      +  D    EV+  G V  L
Sbjct: 97  GGDDYVTKPFSLEEVVARIRAILRRTNHQIDDNDAVLSYADLDMDEDSHEVRRAGVVVDL 156

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD- 208
              E ++L YLM N G+ ++K QI   ++  +D   + N+VES+IS LR+K+      D 
Sbjct: 157 SPTEFKLLRYLMLNSGRVLSKQQILDHVWD-YDWGGDANIVESYISYLRRKIDAVTQPDG 215

Query: 209 -PVD----SKRFLGYSI 220
            PV     +KR +GY +
Sbjct: 216 SPVQPLIHTKRGVGYML 232


>gi|260589748|ref|ZP_05855661.1| DNA-binding response regulator [Blautia hansenii DSM 20583]
 gi|331083179|ref|ZP_08332295.1| hypothetical protein HMPREF0992_01219 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539988|gb|EEX20557.1| DNA-binding response regulator [Blautia hansenii DSM 20583]
 gi|330404568|gb|EGG84108.1| hypothetical protein HMPREF0992_01219 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 14/162 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  SQ+P++ IS        +     G DD V KP     + A++ A+ RR     +  
Sbjct: 67  IRKISQIPVLFISSASDNMNIVMAIQMGGDDFVAKPFDLSVLTAKIQALLRR-----SYD 121

Query: 127 ETGPIRVFSDG----RDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            TG + V           E     Q E   L + E RIL+ LM N+GK V++ ++   ++
Sbjct: 122 YTGQVSVLEHKGALLNTAEAVLFYQDEKIELTKNEYRILQTLMENKGKIVSRERLMEKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D  V+EN +  ++++LRKKL      D + +K  +GY+I
Sbjct: 182 E-NDSFVDENTLSVNVNRLRKKLAQAGLSDFITTKVGMGYTI 222


>gi|170760362|ref|YP_001785656.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407351|gb|ACA55762.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S++P+I IS   S    +   ++G DD + KP +   I+A++ +  RR      
Sbjct: 66  RKIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   ++ + +  + E + E   + ++E  +LE+LM    K V +  +   I+
Sbjct: 126 PKVDEKIVELQGLKFYKERSEIEFRDERVIITKKEGILLEHLMKKYPKVVNRDFLLEKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
               E VEEN +  ++S++RK+L +KLG  D +++ R +GY ++
Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HKLGIEDGIETVRGVGYRLN 227


>gi|325520568|gb|EGC99646.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia sp. TJI49]
          Length = 219

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 21/174 (12%)

Query: 57  GEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+   +L R +R A   VP++ ++   ++   +   D G DD + KP    E+LAR  A+
Sbjct: 56  GKSGTQLLRALREAGDTVPVLVLTARGNVADRVSGLDDGADDYLAKPFDLSEVLARCRAL 115

Query: 116 YRRLKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            RR   S  RA         T  +   +  RD         L  RE  IL  L+++ G  
Sbjct: 116 VRR---SQGRAGDEIVWRDITIDLGTHTVTRDA----ARIALTAREWAILVQLVSHPGIP 168

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ ++   +YG + E +E N +E H+S LRK    KLG D + + R +GY +D
Sbjct: 169 QSRARLEDGLYG-WQEGLESNAIEVHVSNLRK----KLGADLIRTVRGIGYVVD 217


>gi|229120301|ref|ZP_04249551.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663111|gb|EEL18701.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 242

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 135

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 136 TNQHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 237


>gi|225570310|ref|ZP_03779335.1| hypothetical protein CLOHYLEM_06406 [Clostridium hylemonae DSM
           15053]
 gi|225160842|gb|EEG73461.1| hypothetical protein CLOHYLEM_06406 [Clostridium hylemonae DSM
           15053]
          Length = 228

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 8/164 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L+L + IR  S VP++ I+        +   + G DD + KP     + ARV+A+ RR  
Sbjct: 60  LDLCKKIREFSHVPILMITARDMEMDEVMCLECGADDYIAKPFSLAVLKARVSALSRRYV 119

Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEV-QGE-VFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           LK  + R   +G I +  DG + +  +G+    L   E R+L+Y + N+ + + K QI  
Sbjct: 120 LKTGSKRLLVSGDISI--DGAEMKAYKGDRALDLSLTEFRLLKYFLENKNQVLLKEQILE 177

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            ++ +    VEEN +  +I +LR+KL  N    + + +   +GY
Sbjct: 178 YVWDMGGTFVEENTLTVNIGRLRRKLETNSSSTEYIKTIHGMGY 221


>gi|219556768|ref|ZP_03535844.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T17]
 gi|289568870|ref|ZP_06449097.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T17]
 gi|289542624|gb|EFD46272.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T17]
          Length = 236

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 5/152 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET- 128
           + VP+  +S   S+   +   ++G DD + KP    E++ARV A+ RR    + + +ET 
Sbjct: 81  NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETI 140

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             GP+ V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A +
Sbjct: 141 TVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAAD 199

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            NVV+  I  LR+KL    G   + + R +G+
Sbjct: 200 TNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGF 231


>gi|220933353|ref|YP_002512252.1| two component transcriptional regulator, winged helix family
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994663|gb|ACL71265.1| two component transcriptional regulator, winged helix family
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 226

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRR 118
           LE+ R +RA   +VP++ ++     Q  +   ++G DD + KP H  E++    A   R 
Sbjct: 60  LEVIRRLRAGGGKVPVLILTARSQWQEKVQGLEAGADDYLAKPFHMEELVARIRALARRA 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++ R   GP+ + +  +     GE   L   E R+LEYL  + G+ V+K  +   +Y
Sbjct: 120 AGSADGRLALGPLVLDTAAQAVSRNGEPVSLTTFEYRVLEYLARHAGQVVSKQTLTDYLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D+  + NV+E  I +LRKKL       P+++ R  GY +
Sbjct: 180 A-HDDDRDSNVLEVLIGRLRKKLDPDGSLTPIETLRGRGYRL 220


>gi|15894794|ref|NP_348143.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024464|gb|AAK79483.1|AE007662_1 Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325508932|gb|ADZ20568.1| Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 229

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 87/165 (52%), Gaps = 7/165 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S+VP+I IS   S    +   ++G DD + KP  +  ++A++  + RR+     
Sbjct: 65  RDIRTISKVPIIFISARDSDMDQVMAIENGADDYITKPFSYDVLMAKIKGVLRRVYGSYS 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+N   E   + ++ +    E + +   L ++E ++L  L+ N  K V++  +   ++
Sbjct: 125 NNVNNEVFEAKGLFLYINQSMIEYEDKKIELSKKEFQLLYSLIKNADKIVSRETLLDILW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              D  V++N +  +++++RK+L +   ++ +++KR  GY I+ N
Sbjct: 185 NDVD-FVDDNTLSVNMTRVRKRLESIGIYNAIETKRGQGYKINVN 228


>gi|320184189|gb|EFW59005.1| Two-component system response regulator QseB [Shigella flexneri CDC
           796-83]
          Length = 219

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTTRDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   +  E   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|297530122|ref|YP_003671397.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297253374|gb|ADI26820.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 226

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 7/152 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR+ S VP++ ++        +     G DD V KP    E+LAR+ A+ RR   
Sbjct: 62  ETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVAKPFDEAELLARIEAVLRR--T 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  R+      +  D  +  V+ E  P  L  +E  IL  L+ +  +  ++ QI ++++G
Sbjct: 120 AGGRSAIRAAGLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
              +  EE  V+SH+  +R+KLR K GF P D
Sbjct: 180 YLAD-TEERTVDSHMKNIREKLR-KAGF-PAD 208


>gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 229

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 9/205 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++   + + EE L+ +   +   I   L+      LE
Sbjct: 6   LVVDDEKLIVKGLRFSLEQDGMEVDC--AYDGEEALEKAKAGEYDIILLDLMLPKMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++        +   + G DD V KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIREFSNVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAIIRRAGSK 123

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++       E G +++  +GR   + G+   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 QDKQEKAKTVEVGELKLDCEGRRVFISGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G ++   +   V+ HI +LR+K+
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKI 207


>gi|302878086|ref|YP_003846650.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302580875|gb|ADL54886.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 221

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R   + + VP++ ++   S+   +   D+G DD + KP    E+ AR+ A+ RR K  
Sbjct: 63  LRRTRTSKNPVPILILTARDSVADRVAGLDAGADDYLIKPFDLGELQARLRALVRRAKSQ 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +   GR   + G    L  RE  IL  L+ N G+ ++K Q+   +YG +
Sbjct: 123 IEPVIAHGALYLDPAGRSVTLAGRSVELSAREFAILHELLLNAGRVLSKAQLEEKLYG-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E +E N VE  +  LR+KL   L    + + R +GY I
Sbjct: 182 GEEIESNAVEVFVHHLRRKLAPDL----IRTVRGVGYMI 216


>gi|167761217|ref|ZP_02433344.1| hypothetical protein CLOSCI_03622 [Clostridium scindens ATCC 35704]
 gi|167660883|gb|EDS05013.1| hypothetical protein CLOSCI_03622 [Clostridium scindens ATCC 35704]
          Length = 231

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 6/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S +P+I +S        +   D+G DD V KP +  E++AR+ A  R+  
Sbjct: 64  MEVIKSVREVSDIPIIVVSARQEEGEKIQALDAGADDYVTKPFYMGELMARIRAGLRKTG 123

Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +          TG + V  + R   V+GE   L   E +IL  L+ANRGK +    I  
Sbjct: 124 TARQEEIMTVFSTGSLTVDYEKRKVLVEGEEVHLTPIEYKILLLLIANRGKVLTHNYIIR 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            I+G + E ++   +   ++ LR+K+
Sbjct: 184 EIWG-YAEDIDAGNLRVFMATLRRKI 208


>gi|11465394|ref|NP_045215.1| Ycf27 [Cyanidium caldarium]
 gi|14548002|sp|Q9TLQ4|YCF27_CYACA RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|6466297|gb|AAF12879.1|AF022186_1 unknown [Cyanidium caldarium]
          Length = 249

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 17/163 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR  S +P+I ++    +   +   + G DD V KP   RE+ AR+ +I RR++  N   
Sbjct: 77  IRKESDIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRRIQTRNAKL 136

Query: 124 ------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N  +TG + +  + +      E+  L   E  +LE L++  GK  ++++I   +
Sbjct: 137 KPYDNINLFKTGSLNIDLEKKQIYKNNELIRLTEMEFSLLELLVSQSGKAFSRSKILKEV 196

Query: 178 YGL----FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +G      +   +  +V+ HIS+LR KL +    DP +    L
Sbjct: 197 WGYKLSKHEPIADTRIVDVHISRLRAKLED----DPTNPTLIL 235


>gi|329121388|ref|ZP_08250013.1| phosphate regulon response regulator [Dialister micraerophilus DSM
           19965]
 gi|327469678|gb|EGF15145.1| phosphate regulon response regulator [Dialister micraerophilus DSM
           19965]
          Length = 234

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 97/186 (52%), Gaps = 13/186 (6%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D+  ++  L G+ G  VL+  R    +S +P++ ++   S    +   DSG DD + KP 
Sbjct: 47  DLILLDIMLPGEDGLCVLKKLRNTNEYSTIPIVMMTAKTSEYDIVKGLDSGADDYITKPF 106

Query: 104 HHREILARVAAIYRRLKVSNNRAETGP-IRVFSDGRDPEVQ-------GEVFPLPRRERR 155
              E+++RV ++ RR     N ++  P I  + +    E +        EVF L  +E +
Sbjct: 107 GIMELISRVKSLLRRSNYGKNTSKEEPKILKYKNTIIDEAKHVVTENGKEVF-LTLKEFK 165

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +L+YL+ N+G  +++ +I  A++    E +E   V+ HI  LRKK+++   +  +++ R 
Sbjct: 166 LLQYLVINKGIVLSRDRIMEAVWDSPIE-IESRTVDMHIKGLRKKIKDCDKY--INTVRG 222

Query: 216 LGYSID 221
           +GY ++
Sbjct: 223 IGYRLE 228


>gi|325523567|gb|EGD01867.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 220

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IDVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 119 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216


>gi|109453312|gb|ABG34136.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453316|gb|ABG34138.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453318|gb|ABG34139.1| PhoP [Salmonella enterica subsp. diarizonae]
          Length = 213

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
             E  E + ++  + +LRKK++ +   D + +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQTQYPHDVITT 212


>gi|56420875|ref|YP_148193.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380717|dbj|BAD76625.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 228

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 20/154 (12%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R IRAHS VP++ +S  D+P+    +     G DD + KP H   ++A++ A+ RR+   
Sbjct: 64  RQIRAHSNVPILFLSSRDHPT--DMVMSMQLGADDYIQKPFHFDVLIAKIQALLRRVYNY 121

Query: 123 NNRAETGPIRVFS------DGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIF 174
           N     GPI++ +      D     V  E     L + E  IL++L+A + + VA+T++ 
Sbjct: 122 N----AGPIQLQTWCGATVDYEKSTVSNEHGTVELTKNELLILKHLLAKKNQIVARTELI 177

Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKLRNKLGF 207
             ++   DE  V +N +  ++++LRKKL ++LG 
Sbjct: 178 KRLWE--DERFVSDNTLTVNVNRLRKKL-DELGL 208


>gi|296169659|ref|ZP_06851277.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895656|gb|EFG75352.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 236

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 15/207 (7%)

Query: 23  GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75
           G+ L GF    +++  E L+S+     +  +A ++     VL+   ++ A     + VP+
Sbjct: 29  GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 85

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131
             +S   S+   +   ++G DD + KP    E++ARV A+ RR    + + +ET   GP+
Sbjct: 86  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPL 145

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+
Sbjct: 146 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 204

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I  LR+KL    G   + + R +G+
Sbjct: 205 VFIGYLRRKLEANGGPRLLHTVRGVGF 231


>gi|295134400|ref|YP_003585076.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294982415|gb|ADF52880.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 225

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL + +++ + +  +I +S   SL   L   + G DD + KP +  E+ AR+ A+ RR 
Sbjct: 60  LELLQYLKSQNLMDAVIIVSAKDSLDDKLKGLELGADDYLPKPFYMAELNARIKAVLRRK 119

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               NN  +     +F + R  +++ +   L R+E  IL YL+AN+ + V K  +   ++
Sbjct: 120 NFEGNNTIKLANTEIFPEQRRVKIKNKEVELNRKEFDILMYLVANKERLVRKPSLAEHVW 179

Query: 179 G-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G   D+A     + S I  LRKKL+       + +   +GY +
Sbjct: 180 GDNIDQADSFEFIYSQIKNLRKKLKTHHSALNIKAVYGIGYKL 222


>gi|212712838|ref|ZP_03320966.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM
           30120]
 gi|212684530|gb|EEB44058.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM
           30120]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  ++     +  ++  + +  D++ ++  L    E  L
Sbjct: 3   ILIVEDNALLRHHLTVQLKELGHQVDSAEGAKEADYFLNESHPDIAVVDLGL--PDEDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  R+ H  +PL+ ++   S Q  +   +SG DD V KP    E++AR+ A+ RR  
Sbjct: 61  SMIKRWRSNHVSIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E     +    ++  V GE   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKK++     + + + R  GY  D N
Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQFHAQEVIVTVRGQGYRFDVN 223


>gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
 gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 3/137 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--N 124
           +R  SQVP+I ++        +     G DD + KP    E++ARV A+ RR K ++   
Sbjct: 67  VRERSQVPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVLRRTKGTDVTT 126

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E GPI +    R  +V G+   L  +E  +L   + +RG+   + Q+   ++G+    
Sbjct: 127 SYEAGPIVIDEKARKVKVNGKPVVLTLKEFELLTLFVKHRGQVFTREQLLDRVWGIHYVG 186

Query: 185 VEENVVESHISKLRKKL 201
                V++HI  LR KL
Sbjct: 187 -STRTVDTHIKTLRIKL 202


>gi|163758770|ref|ZP_02165857.1| probable two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
 gi|162284060|gb|EDQ34344.1| probable two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
          Length = 225

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 80/155 (51%), Gaps = 7/155 (4%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           + +  P + ++    + + ++ F++G DD + KP    E+ ARV A+ RR + + +   +
Sbjct: 69  SKNTTPALFLTALGEVDSRVEGFEAGGDDYLTKPFAFVELSARVNALGRRREGTQDSEPS 128

Query: 129 ----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183
                 +++    R  E QG+   L  +E ++LEY M   G+ V +T +   ++ + FD 
Sbjct: 129 VLHYAGLKLDLLARSCERQGQPIDLMAKEFKLLEYFMRRPGRLVTRTMLLEQVWDMSFDP 188

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               +VVE+HIS+LR K+      + + ++R  GY
Sbjct: 189 TT--SVVETHISRLRAKVDKPFDEELIRTRRGEGY 221


>gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 222

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 5/145 (3%)

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR    V P+I ++   S+   +   D G +D + KP    E+LARV A  R +
Sbjct: 61  LEVLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLRTV 120

Query: 120 KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +      +T     + +    RD +   E   L  +E  +L + + N+G+ +++ QI + 
Sbjct: 121 QTRERVEDTLMFQELTINEKTRDVQRGNETIELTPKEFELLVFFIKNKGQVLSREQILTN 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G FD   + NV++ ++  LRKKL
Sbjct: 181 VWG-FDYYGDTNVIDVYVRYLRKKL 204


>gi|57207865|dbj|BAD86532.1| hypothetical protein [Staphylococcus aureus]
          Length = 232

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 88/202 (43%), Gaps = 21/202 (10%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + + K  Y A+    G   E    LE ++W       D+  ++  L G   K  E+ + +
Sbjct: 22  KIIKKSKYYAIPAYSGT--EALLYLENKQW-------DLVLLDLMLPGISGK--EVLKQV 70

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R HS  P+I IS     Q  +     G DD ++KP    E+ AR+ A+ RR + S     
Sbjct: 71  REHSSTPVIIISAKNESQYKITSLRMGADDYISKPFDIEEVAARIDALLRRYQKSEREKN 130

Query: 128 TGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           T         I +  D +   V      L  RE +IL+ LM N  K  +K  +F  ++  
Sbjct: 131 TSNQELVFLDIVLNIDSQKVIVNNFEVTLTLREFKILQLLMENPQKIYSKANLFETVWE- 189

Query: 181 FDE-AVEENVVESHISKLRKKL 201
            D+   +EN V  H+S LR KL
Sbjct: 190 -DKFHGDENTVNVHMSNLRNKL 210


>gi|30248529|ref|NP_840599.1| response regulator baeR [Nitrosomonas europaea ATCC 19718]
 gi|30138415|emb|CAD84425.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 229

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 18/179 (10%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89
             LE   WL+ +    V  I   L+  G   L++ R IR+ SQVP+I ++        L 
Sbjct: 33  QGLEVIPWLKENT---VELILLDLMVPGRDGLDICRDIRSFSQVPVIIVTARIEEIDRLL 89

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETG------PIRVFSDGRDPEV 142
             + G DD + KP   RE++ARV A+ RRL+  + N A+          +V  DGR+ E+
Sbjct: 90  GLEMGADDYICKPFSPREMVARVKAVLRRLQPPAPNSAQQALTLSPQSFKVQYDGREIEL 149

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
               F       ++L  L    G+  ++ ++   IY      V +  ++SHI KLRKK+
Sbjct: 150 TAVEF-------QLLYTLYQQPGRIFSRARLMDLIYQ-DQRIVSDRTIDSHIKKLRKKI 200


>gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 227

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 7/144 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  SQVP+I ++        L  FD GVDD V KP   +E++ARV A+ +R +  N 
Sbjct: 67  RQIRQGSQVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKRSR-GNA 125

Query: 125 RAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            A+   I+  S   +P      +  E   L  +E  +L +L ++ G+  ++ Q+   ++G
Sbjct: 126 NAQDRVIKYESLSIEPLSRRVTINDEDIILTPKEFDLLFFLASHPGQVFSREQLLHHVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
            +D   +   V++H+  LR KL N
Sbjct: 186 -YDFYGDSRTVDAHVKNLRSKLGN 208


>gi|289550049|ref|YP_003470953.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus lugdunensis HKU09-01]
 gi|315659323|ref|ZP_07912187.1| hemin DNA-binding response regulator [Staphylococcus lugdunensis
           M23590]
 gi|289179581|gb|ADC86826.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus lugdunensis HKU09-01]
 gi|315495748|gb|EFU84079.1| hemin DNA-binding response regulator [Staphylococcus lugdunensis
           M23590]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 110/225 (48%), Gaps = 14/225 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           +++DD   + D   +   ++G        G  +L+F E  Q +   D++ ++  + G   
Sbjct: 5   LIVDDDQTILDYVASHLNNEGYHTYTKPSGTAALQFLE--QQTV--DIAIVDIMMAGMDG 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              EL + I+    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR
Sbjct: 61  --FELCQQIKLDFDLPVIMLTARDALTDKERAFLSGTDDYVTKPFEIKELIFRIKAVLRR 118

Query: 119 LKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSA 176
            +++     + G + +  +  + +V  +   LP++E ++L Y++ +  K+V  +  +   
Sbjct: 119 YQINAEHIIQLGNLTLNDNYMEVQVDHKTMTLPKKEFQLL-YMLTSHPKQVFLRDTLIEK 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G FD   +E  ++ HI +LR++L        + + R  GY ++
Sbjct: 178 VWG-FDYEGDERTLDVHIKRLRQRLSKLAANVTITTVRGQGYKVE 221


>gi|163745626|ref|ZP_02152986.1| Two-component transcriptional regulator, winged helix family
           protein [Oceanibulbus indolifex HEL-45]
 gi|161382444|gb|EDQ06853.1| Two-component transcriptional regulator, winged helix family
           protein [Oceanibulbus indolifex HEL-45]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + +R A +  P++ ++   +++  +D  ++G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LTLLKTLRGAGNATPVLLLTAMGAVEDRIDGLNAGADDYLVKPFAFGELSARVNALARRP 119

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +          G + +    R     G+   L  RE  +LE+L+  +G+   +T +  A+
Sbjct: 120 QALEQETTLRAGNLTMDLISRRVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + FD     NVVE+HIS+LR K+      + + + R  GY I+
Sbjct: 180 WDISFDPMT--NVVETHISRLRAKVDRPFDVELIQTVRGAGYRIE 222


>gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 227

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 17/205 (8%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQV-PLIGIS 79
           LEFE +    A+    A+E F  G  + +L           E+ R IR  + V P+I ++
Sbjct: 22  LEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLEVLRRIRLKNAVIPIILLT 81

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFS 135
              S+   +   D G  D + KP    E+LAR+ A  R   V     N+  +   + +  
Sbjct: 82  ARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNVVKEEENSSYQIADLYLDE 141

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
             R+ +    +  L  RE  +L +LM +  + + + QI + ++G FD   + NVV+ +I 
Sbjct: 142 KTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNVWG-FDYYGDTNVVDVYIR 200

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220
            LRKK+   +    + + R +GY +
Sbjct: 201 YLRKKVDCNVDVPLIHTVRGVGYVL 225


>gi|284035664|ref|YP_003385594.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283814957|gb|ADB36795.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 231

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 13/149 (8%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL   IR  ++Q+P++ ++   S    L  F++G DD + KP    E++ARV A+ RR 
Sbjct: 66  LELAEYIRTKNAQMPILMLTALDSTTDKLMGFEAGADDYLAKPFDFLELVARVRALLRR- 124

Query: 120 KVSNNRAETGPIRVFSD---GRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             S    E+ PI   +D    R  +V    G    L  RE  +L+YL+ N+G+ V++  I
Sbjct: 125 --SAPPEESQPILRLADLELDRQQKVARRAGRTIDLTAREFALLDYLLRNQGRVVSRVDI 182

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKL 201
              ++ + FD     NV++ +++ LR K+
Sbjct: 183 AEQVWDVGFDTGT--NVIDVYVNYLRNKI 209


>gi|260575288|ref|ZP_05843288.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259022548|gb|EEW25844.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 219

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 6/151 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETG 129
           +  P+I ++    +   +D  ++G DD + KP    E+ AR+ A+ RR   + N +    
Sbjct: 71  AATPVIILTARDRITDRIDGLNAGADDYLVKPFDLAELSARIGAVARRYSGNPNPQVHLA 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +    R          L +RE  I E L+   G  V K QI   +Y  FD  VE N 
Sbjct: 131 DLTIDLAARSITSPEGPIDLSQREWIIFEVLLQRPGTIVPKGQIEERLYS-FDAEVESNT 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E ++S+LRK    KLG D +++ R +GY +
Sbjct: 190 IEVYVSRLRK----KLGRDVIETVRGMGYRL 216


>gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
 gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
          Length = 227

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 19/206 (9%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQV-PLIGIS 79
           LEFE +    A+    A+E FL    + +L           E+ R +R  + V P+I ++
Sbjct: 22  LEFEGYESEIAKTGTEAMEKFLNSSWDLILLDVMLPNISGLEVLRRVRLKNAVIPIILLT 81

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV---FSD 136
              S+   +   D G  D + KP    E+LAR+ A   R+  +    E     +   F D
Sbjct: 82  ARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL-RISHAIKEEEYSSFHIADLFLD 140

Query: 137 GRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            +  EV+    V  L  RE  +L +LM +  + + + QI + ++G FD   + NVV+ +I
Sbjct: 141 EKTREVKRGNNVAELTPREFDLLHFLMKHENQVLNREQIVTNVWG-FDYYGDTNVVDVYI 199

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220
             LRKK+   +    + + R +GY +
Sbjct: 200 RYLRKKIDCNVDVPLIHTVRGVGYVL 225


>gi|50121372|ref|YP_050539.1| DNA-binding transcriptional regulator PhoP [Pectobacterium
           atrosepticum SCRI1043]
 gi|49611898|emb|CAG75347.1| two-component response regulator of virulence determinants
           [Pectobacterium atrosepticum SCRI1043]
          Length = 229

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++  +  +  ++       D++ ++  L    E  +
Sbjct: 3   ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGL--PDEDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  RAH  ++P++ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIRRWRAHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    R+  +      L   E  I+E L+ N+GK V+K  +   +Y 
Sbjct: 121 GLASQIISLPPFEIDLSRRELMIHSAPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK++     D + + R  GY  D
Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQADAQDVITTVRGQGYRFD 221


>gi|325273473|ref|ZP_08139717.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324101394|gb|EGB98996.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 231

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 14/164 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G++VL   R +R  S VP++ +S   S    +D  D G +D V KP   +E LARV A+ 
Sbjct: 63  GQQVL---RELREWSSVPVLVLSVRASELQKVDALDGGANDYVTKPFGIQEFLARVRALL 119

Query: 117 RRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R++  +     +A  GP+ V    R   ++G    L R+E  +L  L  + G+ + + Q+
Sbjct: 120 RQVPQAGGSEVKASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVMTQQQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
              I+G        +V ++H  ++    LR KLG DP  + RF+
Sbjct: 180 LKDIWG------PSHVEDTHYLRIVVGHLRQKLGDDPT-APRFI 216


>gi|312128910|ref|YP_003996250.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311905456|gb|ADQ15897.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 14/186 (7%)

Query: 31  SLEFEEWLQSSA---REDVSAIEAF---------LIGKGEKVLELPRIIRAHSQVPLIGI 78
           SLE  ++L  SA   +E +  IE +         ++  G  +  L  I  +     +I +
Sbjct: 19  SLEEAQYLVESASTFKEGLLKIEDYQYDAILLDLMLPDGNGLDLLSEIRSSQPNTSVIIL 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPIRVFSDG 137
           S   +++  +   D G DD + KP H  E+ +R+ +A+ RR +   N+ E   + ++ + 
Sbjct: 79  SAKDAVEDKVKGLDLGADDYLAKPFHLVELHSRLKSALRRRNQQGENKIEYKNLCLYPET 138

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHISK 196
           RD  V G    L R+E  +L Y M   G+ + +T +  +++G   D+A   + + S I  
Sbjct: 139 RDFLVAGNHVALNRKEYDVLYYFMIRPGRLIQRTTLAESVWGDHIDQADSLDFIYSQIKN 198

Query: 197 LRKKLR 202
           LRKKL+
Sbjct: 199 LRKKLK 204


>gi|109453254|gb|ABG34107.1| PhoP [Salmonella enterica subsp. enterica]
          Length = 213

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
             E  E + ++  + +LRKK++ +   D + +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITT 212


>gi|41406932|ref|NP_959768.1| hypothetical protein MAP0834c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118465275|ref|YP_880280.1| PrrA family transcriptional regulator [Mycobacterium avium 104]
 gi|41395282|gb|AAS03151.1| hypothetical protein MAP_0834c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118166562|gb|ABK67459.1| two component response transcriptional regulatory protein prra
           [Mycobacterium avium 104]
          Length = 233

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 15/207 (7%)

Query: 23  GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75
           G+ L GF    +++  E L+S+     +  +A ++     VL+   ++ A     + VP+
Sbjct: 26  GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131
             +S   S+   +   ++G DD + KP    E++ARV A+ RR    + + +ET   GP+
Sbjct: 83  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPL 142

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+
Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 201

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I  LR+KL    G   + + R +G+
Sbjct: 202 VFIGYLRRKLEANGGPRLLHTVRGVGF 228


>gi|310780216|ref|YP_003968548.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749539|gb|ADO84200.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 225

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 4/143 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++      + ++  D G DD + KP    E+LAR+    R  K 
Sbjct: 62  EVCRRIRKKSDVPVIVLTATDKTFSKINLLDLGADDYITKPFIIGELLARIRVALRHNKE 121

Query: 122 SNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++ +      IR+  + +   VQ E   L + E  +L YL+ NR   +++ +I + I+
Sbjct: 122 FSDKGQVISYEGIRLDLNKKLVIVQEEEISLTKTEFNLLHYLILNREIVLSREKILNNIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D    E +V+ +I  LRKK+
Sbjct: 182 G-YDYNGGEKIVDVYIKSLRKKV 203


>gi|146329260|ref|YP_001209793.1| two-component copper resistance response regulator [Dichelobacter
           nodosus VCS1703A]
 gi|146232730|gb|ABQ13708.1| two-component copper resistance response regulator [Dichelobacter
           nodosus VCS1703A]
          Length = 229

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 7/165 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + +RA  +  P++ +S    +   ++   +G DD + KP    E+LARV ++ RR 
Sbjct: 60  LSLIQQLRAQGASTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQSLARRR 119

Query: 120 KVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +     E   + +    R     G+   L  RE R+LEYLM+N G+ V +T +   
Sbjct: 120 NTDVHDQMVLEIADLHLDRLRRKVTRAGKKINLQPREFRLLEYLMSNSGQVVTRTMLLEK 179

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   FD   + NV++ HIS+LR K+        + ++R  GYS+
Sbjct: 180 VWEYNFDP--QTNVIDVHISRLRSKIDKDFNPPLIHTERGAGYSM 222


>gi|15901469|ref|NP_346073.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|15903517|ref|NP_359067.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|116516130|ref|YP_816903.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148988676|ref|ZP_01820109.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|149001907|ref|ZP_01826861.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|149011512|ref|ZP_01832759.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|168487278|ref|ZP_02711786.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|168575180|ref|ZP_02721143.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|169833223|ref|YP_001695024.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|225855061|ref|YP_002736573.1| response regulator [Streptococcus pneumoniae JJA]
 gi|225859389|ref|YP_002740899.1| response regulator [Streptococcus pneumoniae 70585]
 gi|225861461|ref|YP_002742970.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649183|ref|ZP_04523435.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974]
 gi|237822260|ref|ZP_04598105.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229234|ref|ZP_06962915.1| DNA-binding response regulator [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254511|ref|ZP_06978097.1| DNA-binding response regulator [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|303253986|ref|ZP_07340106.1| DNA-binding response regulator [Streptococcus pneumoniae BS455]
 gi|303258559|ref|ZP_07344539.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262649|ref|ZP_07348589.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263588|ref|ZP_07349510.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|303266968|ref|ZP_07352843.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|303269868|ref|ZP_07355612.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|307068261|ref|YP_003877227.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307127843|ref|YP_003879874.1| response regulator [Streptococcus pneumoniae 670-6B]
 gi|5830520|emb|CAB54566.1| response regulator [Streptococcus pneumoniae]
 gi|14973122|gb|AAK75713.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|15459132|gb|AAL00278.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116076706|gb|ABJ54426.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147759716|gb|EDK66706.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147764502|gb|EDK71433.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147925877|gb|EDK76952.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|168995725|gb|ACA36337.1| response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|183569849|gb|EDT90377.1| response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|183578765|gb|EDT99293.1| response regulator [Streptococcus pneumoniae MLV-016]
 gi|225721513|gb|ACO17367.1| response regulator [Streptococcus pneumoniae 70585]
 gi|225723119|gb|ACO18972.1| response regulator [Streptococcus pneumoniae JJA]
 gi|225726677|gb|ACO22528.1| response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|301794621|emb|CBW37069.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301802336|emb|CBW35090.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302599074|gb|EFL66100.1| DNA-binding response regulator [Streptococcus pneumoniae BS455]
 gi|302636205|gb|EFL66700.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|302640060|gb|EFL70515.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302640603|gb|EFL71006.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|302643485|gb|EFL73757.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|302646626|gb|EFL76851.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|306409798|gb|ADM85225.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306484905|gb|ADM91774.1| response regulator [Streptococcus pneumoniae 670-6B]
 gi|327389818|gb|EGE88163.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332073967|gb|EGI84445.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332199663|gb|EGJ13738.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332200194|gb|EGJ14267.1| response regulator [Streptococcus pneumoniae GA47368]
 gi|332201060|gb|EGJ15131.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 225

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +  +GF  +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222


>gi|226944932|ref|YP_002800005.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226719859|gb|ACO79030.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 221

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  LE+ R  RA     P++ ++   S    ++   +G DD + KP H  E+  R+ A+
Sbjct: 56  GKPGLEVLREWRAQGLATPVLVLTARASWAERIEGLKAGADDYLCKPFHPEELQLRIQAL 115

Query: 116 YRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR     N+   E G +++    +      E   L   E R+L YLM + G+ ++K Q+
Sbjct: 116 LRRAHGLANQPQLEAGGLQLDEARQVVRCGTEDIELTAAEFRLLRYLMLHPGQLLSKGQL 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +Y    E  + NV+E HI+    +LR KLG   ++++R  GY
Sbjct: 176 AEHLYDGETER-DSNVIEVHIN----RLRGKLGRTVIETRRGQGY 215


>gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
 gi|302477398|gb|EFL40491.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
          Length = 249

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   +
Sbjct: 85  LGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAA 144

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + R+E+    G + +  D  +    G+   L   E  +L +LM N  + ++K QI   ++
Sbjct: 145 DRRSESMLVVGDLTLDEDSHEVTRGGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRVW 204

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +D   + NVVE +IS LR+K+    G +P + ++R  GY I
Sbjct: 205 S-YDFGGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLI 244


>gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 25/223 (11%)

Query: 18  LFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAF-----------LIGKGEKVLELP 64
           L  +D V L  F  LE  +E +  S A + ++A+ A             +  G   LE+ 
Sbjct: 5   LLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARQLNLDLIILDWMLPGVSGLEIC 64

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA   +VP+I ++    +   +   D+G DD V KP    E+LARV A  RR K   
Sbjct: 65  RRLRASGDKVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLRRSK--- 121

Query: 124 NRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              ++  I +F D       GEV+       L  +E  +L+YL+ +  + + + +I   +
Sbjct: 122 -ETDSADILMFDDLSLNRSTGEVYRGQRLVELTAKEFDLLDYLLTHPRQVITRDRILEEV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + NV+E +I  LR KL        + + R +GY +
Sbjct: 181 WG-YDFMGDSNVIEVYIRYLRLKLEANNEKRLLQTVRGVGYVL 222


>gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061]
 gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061]
          Length = 228

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ + ++  P+I I+   S+   +   D G +D + KP    E+LAR+ A  R    +
Sbjct: 66  LRRVRKTNTATPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNIHA 125

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ET      + V    RD +  G++  L  RE  +L +L+ ++ + + + Q+ +A++
Sbjct: 126 QEEKETELSIADLTVNEKTRDIQRAGQMLELTPREFDLLVHLLKHQQQVLTRDQLLTAVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   + NVV+ +I  LRKK+        + + R +GY +
Sbjct: 186 G-FDYFGDTNVVDVYIRYLRKKVDYPFEKQLIHTVRGVGYVM 226


>gi|182437360|ref|YP_001825079.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777970|ref|ZP_08237235.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178465876|dbj|BAG20396.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658303|gb|EGE43149.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 248

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 22/209 (10%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +   A+ A             ++   + +  L R+ R +  VP++ +
Sbjct: 39  ALRYEGWEVRSAGDGAGAVRAARDFRPDAVVLDVMLPDMDGLSVLGRLRREYDDVPVLFL 98

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAET----GPIR 132
           +   +++  +    +G DD V KP    E++AR+  + RR    V+  RAE+    G + 
Sbjct: 99  TARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGSAVAAGRAESTLTVGDLV 158

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  D  +    G+   +   E  +L +LM N  + ++K QI   ++  +D   + NVVE 
Sbjct: 159 LDEDSHEVSRGGDAIHVTATEFELLRFLMRNPRRVLSKAQILDRVWN-YDFGGQANVVEL 217

Query: 193 HISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +IS LRKK+    G  P + ++R  GY I
Sbjct: 218 YISYLRKKI--DAGRTPMIHTRRGAGYLI 244


>gi|167855905|ref|ZP_02478655.1| YgiX [Haemophilus parasuis 29755]
 gi|167852993|gb|EDS24257.1| YgiX [Haemophilus parasuis 29755]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ +G        G S++ F   +      SSA  D   ++  L    G +V
Sbjct: 3   ILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTLPKMDGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R  RA+  VP++ ++   +L   +     G DD + KP    E++AR+ A I RR 
Sbjct: 63  LQSWR--RANQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   E   ++   + R   ++ +   L  RE  +LE  M N+ + + ++ I   +Y 
Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLYT 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +D+ V  N +E HI  LR+KL
Sbjct: 181 -WDDEVSSNALEVHIYNLRQKL 201


>gi|148984065|ref|ZP_01817360.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|148994896|ref|ZP_01823917.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|149021277|ref|ZP_01835523.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168483497|ref|ZP_02708449.1| response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|168488654|ref|ZP_02712853.1| response regulator [Streptococcus pneumoniae SP195]
 gi|225857250|ref|YP_002738761.1| response regulator [Streptococcus pneumoniae P1031]
 gi|289167497|ref|YP_003445766.1| response regulator [Streptococcus mitis B6]
 gi|307702096|ref|ZP_07639103.1| response regulator [Streptococcus mitis NCTC 12261]
 gi|307705357|ref|ZP_07642219.1| response regulator [Streptococcus mitis SK597]
 gi|307707007|ref|ZP_07643804.1| response regulator [Streptococcus mitis SK321]
 gi|307707429|ref|ZP_07643911.1| response regulator [Streptococcus mitis NCTC 12261]
 gi|322377389|ref|ZP_08051880.1| DNA-binding response regulator [Streptococcus sp. M334]
 gi|147923354|gb|EDK74467.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147926964|gb|EDK78009.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147930378|gb|EDK81362.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|172043120|gb|EDT51166.1| response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|183572816|gb|EDT93344.1| response regulator [Streptococcus pneumoniae SP195]
 gi|225725623|gb|ACO21475.1| response regulator [Streptococcus pneumoniae P1031]
 gi|288907064|emb|CBJ21898.1| response regulator [Streptococcus mitis B6]
 gi|301800454|emb|CBW33088.1| response regulator protein [Streptococcus pneumoniae OXC141]
 gi|307616381|gb|EFN95572.1| response regulator [Streptococcus mitis NCTC 12261]
 gi|307616583|gb|EFN95773.1| response regulator [Streptococcus mitis NCTC 12261]
 gi|307617533|gb|EFN96703.1| response regulator [Streptococcus mitis SK321]
 gi|307621144|gb|EFO00219.1| response regulator [Streptococcus mitis SK597]
 gi|321281589|gb|EFX58598.1| DNA-binding response regulator [Streptococcus sp. M334]
 gi|332072466|gb|EGI82949.1| response regulator [Streptococcus pneumoniae GA17570]
          Length = 225

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +  +GF  +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222


>gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 228

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + IR  S VP+I ++        +   + G DD V KP   +E+LARV A+ RR  
Sbjct: 65  MEVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124

Query: 120 -KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +N     P + + ++       GE    P +E  +L YL +N+ K   + Q+   +
Sbjct: 125 GEEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G +D       V+ HI +LR+KL 
Sbjct: 185 WG-YDYPGYSRTVDVHIKRLREKLN 208


>gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 227

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--AAIYRR 118
           +E+ R IR +S+VP+I ++    +   +   D G +D + KP    E+LAR+  A   + 
Sbjct: 63  IEVLRKIRHNSEVPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSALKTKN 122

Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +S  R+ ++G +++  D        E   L ++E  +L Y + N    + + +I   +
Sbjct: 123 HGISEGRSLQSGSLKLDIDKHKVTYDEETVELTKKEFDLLHYFLENHDIVLTRDKILQTV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G +D   + N+V+ +I  LR K+ +K     + + R +GY
Sbjct: 183 WG-YDYMGDTNIVDVYIRYLRSKIDDKYNKKIIYTIRGVGY 222


>gi|89896507|ref|YP_519994.1| hypothetical protein DSY3761 [Desulfitobacterium hafniense Y51]
 gi|219667638|ref|YP_002458073.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335955|dbj|BAE85550.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537898|gb|ACL19637.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S  P++ +S     +  ++  D G DD + KP H  E+LAR+ A+ RRL+    
Sbjct: 68  REIRGFSGTPILVVSAREQEKEKIEALDLGADDYITKPFHMGELLARIRAVKRRLQ---Q 124

Query: 125 RAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     + VFS        + R   V G    L   E ++L+ ++AN+GK +    I   
Sbjct: 125 QLAPPSLSVFSCDYLTVDYEKRKVLVDGNEVHLTPMEYKLLQLMIANKGKVLTHNYIVKE 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           ++G + E  +   +   ++ LR+K+   + 
Sbjct: 185 VWG-YSETGDTKTIRVFMANLRRKIEKNIA 213


>gi|322391334|ref|ZP_08064804.1| nisin biosynthesis regulatory protein NisR [Streptococcus peroris
           ATCC 700780]
 gi|321145760|gb|EFX41151.1| nisin biosynthesis regulatory protein NisR [Streptococcus peroris
           ATCC 700780]
          Length = 228

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 4/145 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           LE+ ++IR    VP+  I+     +  +   ++G DD + KP   +E+LARV    R   
Sbjct: 60  LEICQMIREQITVPICFITAKDMDEDLVAGINAGADDYIMKPFSMQELLARVKMHLRREE 119

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R K + ++ ++G + +++D ++  +  +   L RRE  I+  L +N  K  +  +I++ +
Sbjct: 120 RTKETVHQIKSGKLILYTDSKELFINDDKIALTRREFDIVNLLASNPSKIYSIEEIYNYL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           Y    EA+  +V E +I K+R+KL+
Sbjct: 180 YPQSSEALLRSVSE-YIYKIRQKLK 203


>gi|239994403|ref|ZP_04714927.1| two component transcriptional regulator, winged helix family
           protein [Alteromonas macleodii ATCC 27126]
          Length = 225

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 10/193 (5%)

Query: 19  FGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAF--LIGKGEKVLELPRIIRAHSQVP 74
           F   G+S EGF  +E      L +  R +  AI     + G  + V  LP  I++    P
Sbjct: 15  FLSRGLSAEGFECIEESALHNLVTRIRHEAPAIIVLDRMFGDEDSVELLP-AIKSLPHAP 73

Query: 75  LIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGP 130
           ++ + +    ++  ++    G DD + KP    E+LAR+ A+ RR+    V+      GP
Sbjct: 74  MVLLLTAVDEVRERVNGLKQGADDYLCKPFDFDELLARITALSRRVTNTPVTQLGLTIGP 133

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +  + R   + GE   L + E  +L Y   N  K +++ +I S ++    + +  NVV
Sbjct: 134 LNIDDESRIATLSGEEISLTKLEYDMLYYFAENAEKVLSRERILSRVWRSHSDPL-TNVV 192

Query: 191 ESHISKLRKKLRN 203
           + +IS+LR+KL +
Sbjct: 193 DVYISRLRQKLHS 205


>gi|167578493|ref|ZP_02371367.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 220

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 12/162 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R    +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---Q 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             RA+T    G +R+          G+   L  +E  +L  LM   G  +++ Q    +Y
Sbjct: 120 TGRAQTVLAVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + E +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216


>gi|332872003|ref|ZP_08440390.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
 gi|332731036|gb|EGJ62339.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
           +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + +  
Sbjct: 64  QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ + FD
Sbjct: 124 NELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNINFD 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
              + N ++  + +LR K+    G++P  + + R LGY I
Sbjct: 184 --TDTNNIDVAVRRLRSKIDE--GYEPKLIHTIRGLGYKI 219


>gi|318042529|ref|ZP_07974485.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 233

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 4/153 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA--E 127
           + +P++ ++    ++  +   D+G DD + KP + RE+LARV A+ RR    SN +A  E
Sbjct: 78  NTIPILMVTAKDEVEDRVKALDAGADDYLCKPFNIRELLARVRALVRRNSNTSNKKALLE 137

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +        V G+   L  RE  +L  LM    + +++ Q+ + ++G  D   + 
Sbjct: 138 YGALSINRPEHICSVNGKAIHLTVREFDLLSTLMEQPKQVISREQLITEVWG-EDYFGDI 196

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            VV+++I  LR KLR     + + + R +G+++
Sbjct: 197 TVVDTYIKYLRVKLRTHGLGEMIQTVRGVGFTL 229


>gi|307243353|ref|ZP_07525515.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493267|gb|EFM65258.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 240

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R IR  S +P++ ++        ++ F  G DD + KP    E++ R+ ++ RR  
Sbjct: 67  FETLRQIREFSNIPILMLTARTDSILKIEGFRIGADDYLTKPFELPELVVRILSLIRRYT 126

Query: 121 VSNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V N   E         +++  D R    +  +  L  +E  IL +L  N+GK + K  I+
Sbjct: 127 VFNGIEEVNAEICFDGLKILPDDRSVHGEFGICELHPKEYEILFFLAKNQGKILTKQSIY 186

Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            +++   DE + ++N + + IS+LRKKL+      D +++ + +GY
Sbjct: 187 ESVWK--DEYIYDDNNIMAVISRLRKKLQTVTNMNDYIETVKGVGY 230


>gi|168493531|ref|ZP_02717674.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|194398437|ref|YP_002038249.1| response regulator [Streptococcus pneumoniae G54]
 gi|221232376|ref|YP_002511529.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|183576296|gb|EDT96824.1| response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|194358104|gb|ACF56552.1| response regulator TCS01 [Streptococcus pneumoniae G54]
 gi|220674837|emb|CAR69411.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
          Length = 225

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +  +GF  +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222


>gi|149923814|ref|ZP_01912205.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
 gi|149815326|gb|EDM74870.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
          Length = 231

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 15/213 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           A V+ GY AL       L G   +    W     R D+  ++  L   G    E+ R +R
Sbjct: 22  AFVRRGYEALL------LHGGGEVVPAVW---RLRPDLLVLDLML--PGADGFEILRHLR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
                P++ ++        +   + G DD + KP+    +LARV A+ RR +     AE 
Sbjct: 71  PRWTGPILILTARDGDFDQVSGLELGADDYIAKPVATPVLLARVRALLRRSRSGPREAEL 130

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G +R+    R+   QG +  L   E  +L +L A  G+ V + Q+F  + G+  + ++
Sbjct: 131 ELGELRITPSAREVRAQGRLLSLSDSEYELLVFLAARAGEVVTREQLFRELRGIEYDGLD 190

Query: 187 ENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            + ++  +SKLR +LR +L G  P+ +    GY
Sbjct: 191 RS-MDLRVSKLRARLREQLEGRAPIRTVHGRGY 222


>gi|317492809|ref|ZP_07951233.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918931|gb|EFV40266.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 241

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 4/168 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 66  LMLPGTDGLTLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 125

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             I RR  V    +   P+ +  + R     Q ++  L   E R+L+ L    G  +++ 
Sbjct: 126 KTILRRC-VRRTESNAEPMLIIDENRYQASFQDQLLDLTPAEFRLLKTLATQPGTVLSRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           Q+ + +Y  +   V +  V+SHI  LR+KL      +P + S   +GY
Sbjct: 185 QLLNHLYDDY-RVVTDRTVDSHIKNLRRKLEQLENGEPFIRSVYGIGY 231


>gi|311033061|ref|ZP_07711151.1| DNA-binding response regulator [Bacillus sp. m3-13]
          Length = 232

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 2/159 (1%)

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           E+ R +R    S +P+I IS        +  F  G DD V KP    E++ R+ A+ RR 
Sbjct: 69  EICRWVRNDLKSLMPIIIISGKTEESDIIKGFKLGADDYVVKPFRPAELMVRIEAVLRRT 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +       +     +  + G    L + E ++L + M N  + + + QI ++IY 
Sbjct: 129 AARCGKLSFTGFTLKPAKGEALINGSPLNLTKFEFKLLHFFMQNSDQVLTREQILNSIYE 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++ V +  ++ HI  LR+K++     D + + R +GY
Sbjct: 189 HHEKMVSDRTIDVHIKHLREKIKMYTPKDYIQTVRGMGY 227


>gi|257084611|ref|ZP_05578972.1| subtilin biosynthesis regulatory protein SpaR [Enterococcus
           faecalis Fly1]
 gi|256992641|gb|EEU79943.1| subtilin biosynthesis regulatory protein SpaR [Enterococcus
           faecalis Fly1]
          Length = 228

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR     P+I IS     +  +   +SG DD + KP   +++  ++ +  RR  
Sbjct: 60  IDICKRIRDSVSYPIIFISALGLEEDIIYGLESGGDDYITKPFSLKQLKVKIDSHLRRET 119

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N    +  T  + +  + +   V G +   P++E  ++E L++N G  ++K Q+F  I
Sbjct: 120 RNNVPKKKIHTQNVVLNKEKKQVVVNGTIVIFPKKEYLVIEKLISNIGNVISKDQLFETI 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           +G +D     + V  HI K+R K+      F  + +K  LGY
Sbjct: 180 WG-YDSESSLSTVTEHIKKIRSKIAEYDSNFTYIQTKYGLGY 220


>gi|219856745|ref|YP_002473867.1| hypothetical protein CKR_3402 [Clostridium kluyveri NBRC 12016]
 gi|219570469|dbj|BAH08453.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 233

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 11/143 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ ++      + +    SG DD + KP    E++ARV ++ RR    N   
Sbjct: 70  IRQTSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTRFNTTG 129

Query: 127 ETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +      +       D R    Q   F LP +E  +L +   N+GK + K QI+  ++G 
Sbjct: 130 DHSQPLTYQGLTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYEEVWG- 188

Query: 181 FDEA--VEENVVESHISKLRKKL 201
             EA   +++ + + IS+LRKK+
Sbjct: 189 --EAYVYDDSNIMAIISRLRKKI 209


>gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 8/191 (4%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           E L+++  +D   I   L+       E+ R ++      ++ ++   S+   +   D G 
Sbjct: 37  EGLETALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGA 96

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPL 149
           DD + KP    E+LAR+ AI+RR  + + + +T    V+ D       R      +   L
Sbjct: 97  DDYIVKPFAIEELLARIRAIFRRQDIESEK-KTPSQGVYRDLVLNPQNRSVNRGDDEISL 155

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            +RE  +L  LM N  + + + ++ S ++  +DEAVE NVV+ +I  LR K+        
Sbjct: 156 TKREYDLLNILMTNMNRVMTREELLSNVWK-YDEAVETNVVDVYIRYLRGKIDIPGKESY 214

Query: 210 VDSKRFLGYSI 220
           + + R +GY I
Sbjct: 215 IQTVRGMGYVI 225


>gi|189351379|ref|YP_001947007.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221200185|ref|ZP_03573228.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221206662|ref|ZP_03579674.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221211364|ref|ZP_03584343.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|189335401|dbj|BAG44471.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221168725|gb|EEE01193.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|221173317|gb|EEE05752.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221180424|gb|EEE12828.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 220

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IDVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 119 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216


>gi|150008544|ref|YP_001303287.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|255014344|ref|ZP_05286470.1| two-component system response regulator [Bacteroides sp. 2_1_7]
 gi|256841439|ref|ZP_05546946.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|262383394|ref|ZP_06076530.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298376189|ref|ZP_06986145.1| DNA-binding response regulator [Bacteroides sp. 3_1_19]
 gi|301309445|ref|ZP_07215387.1| DNA-binding response regulator [Bacteroides sp. 20_3]
 gi|149936968|gb|ABR43665.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256737282|gb|EEU50609.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|262294292|gb|EEY82224.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298267226|gb|EFI08883.1| DNA-binding response regulator [Bacteroides sp. 3_1_19]
 gi|300832534|gb|EFK63162.1| DNA-binding response regulator [Bacteroides sp. 20_3]
          Length = 226

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 4/168 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +L+  R +R    + +I   D  S++  +   D G DD + KP H  E+ AR+ +
Sbjct: 57  GSGLTLLKELRALRKKDSIIIISAKD--SIEDKVTGLDLGADDYLTKPFHLAELNARIKS 114

Query: 115 IYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR +     +     + ++ D     + G+   L R+E  +L Y ++N  + ++K  +
Sbjct: 115 VIRRKQQDGELQLSLANLTIYPDKHSVYINGKEIVLNRKEFDLLYYFISNPNRLISKATL 174

Query: 174 FSAIYGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +++G + D+A   + + S +  LRKKL+       + +    GY +
Sbjct: 175 AESVWGDYIDQADNFDFIYSQVKNLRKKLKAAGAIPEIKAVYGFGYKM 222


>gi|315612711|ref|ZP_07887622.1| response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315314821|gb|EFU62862.1| response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 225

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAIDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QGEV  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +     +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLAGFIETKKGIGYGL 222


>gi|229118520|ref|ZP_04247873.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228664901|gb|EEL20390.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 234

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR +S VP+I ++   +    L   + G DD + KP +   +LAR+  I +R   S
Sbjct: 74  ICREIRKNSDVPIIIVTSRDNEVDELMSMNLGADDFITKPYNTEILLARITNIMKRTYGS 133

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++T  +  + D            + +V  L + E +IL YL+ N+G  V +  +   
Sbjct: 134 ---SKTSNMLSYMDFHLNLSNASVMYKDQVIELTKNEVKILSYLINNKGNIVKREFLMEH 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           ++   D  V++  +  +I++LRKKL  +LG  +P++++R LGY
Sbjct: 191 LWK-SDYFVDDGTLTVNITRLRKKLE-ELGIENPIETRRGLGY 231


>gi|255657155|ref|ZP_05402564.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452007|ref|ZP_06893722.1| response regulator [Clostridium difficile NAP08]
 gi|296879598|ref|ZP_06903577.1| response regulator [Clostridium difficile NAP07]
 gi|296259198|gb|EFH06078.1| response regulator [Clostridium difficile NAP08]
 gi|296429401|gb|EFH15269.1| response regulator [Clostridium difficile NAP07]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 20/195 (10%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA---FLIGKGEKVLELPRIIR 68
           K GY  +  DDGV  E    L+       S   D+  ++    +L G       + R+ R
Sbjct: 23  KGGYTCVTADDGV--EALTILK-------SNNIDLMILDVMMPYLDG-----FSVCRVSR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126
             + +P+I ++     +  L  ++ G DD + KP   + +LA+V A+ RR    +  N  
Sbjct: 69  EMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTTGIPKNSL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G I +    R   V+ ++  L  +E  +L   M N  +  ++ ++ + I+G +D    
Sbjct: 129 ILGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG-YDFEGN 187

Query: 187 ENVVESHISKLRKKL 201
              V++HI  LRKKL
Sbjct: 188 TRTVDTHIKTLRKKL 202


>gi|225182095|ref|ZP_03735524.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225167214|gb|EEG76036.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 226

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R     S  P+I ++        +   D G DD + KP   RE+++R+ ++ RR   
Sbjct: 62  ELCREFGGQSDTPVIFLTACDEEVNVVMGLDMGADDYITKPFRVRELVSRIKSVLRRYNK 121

Query: 122 SN-NRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S  N AE    ++  +  + +V   GE   L   E R+L  L  ++G  + + QI   ++
Sbjct: 122 SMPNNAEINLGKLIINTAEAKVYKDGEAVLLTALEYRLLLTLANSKGLTLTRNQILEGLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
            +  + V +N +  +I +LR+K+ +    DP     + + R LGY +
Sbjct: 182 DVAGDFVNDNTLTVYIKRLREKIED----DPQQPQIIKTVRGLGYKV 224


>gi|110799121|ref|YP_695585.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168206260|ref|ZP_02632265.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209490|ref|ZP_02635115.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168212262|ref|ZP_02637887.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168216017|ref|ZP_02641642.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182625180|ref|ZP_02952956.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110673768|gb|ABG82755.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170662235|gb|EDT14918.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712397|gb|EDT24579.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170715969|gb|EDT28151.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177909639|gb|EDT72073.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182381725|gb|EDT79204.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 227

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 25/231 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKG-EKV 60
           +L++D   + +  +  F +D V +E  ++ L+  E+L +    D+  ++  L G G  +V
Sbjct: 5   LLVEDNIEISENIVEYFKND-VEIECVYDGLDAIEYLNTYYF-DIVILDLMLPGAGGMEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           L      R ++ V  I ++    L   L  F+ G +D + KP    E+ ARV  I +   
Sbjct: 63  LNFISKKRLNTGV--IVLTAKEELGDKLRAFNLGANDYLTKPFFMEELKARVNVILKSLG 120

Query: 118 RLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++K SN              +VF + ++ E+  ++F L       LEYL+ N+G  + K 
Sbjct: 121 KIKDSNILQFKSMEINMKTKKVFINHKELELNEKLFNL-------LEYLVINKGVVLFKE 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           Q+F  I G   +A  E ++E ++S+LRK+L +  G+D  + +KR +GY ID
Sbjct: 174 QLFDNICGYNSDASTE-IIEVYMSRLRKQL-SPFGYDKYIVTKRGMGYLID 222


>gi|301062846|ref|ZP_07203439.1| putative transcriptional activator protein CopR [delta
           proteobacterium NaphS2]
 gi|300443046|gb|EFK07218.1| putative transcriptional activator protein CopR [delta
           proteobacterium NaphS2]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 5/149 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA-ETGP 130
            P+I +S   S+   +    +G DD + KP    E+LAR+ A+ RR  +V+   A   G 
Sbjct: 73  TPVIILSAKRSVDDRVRGLQTGGDDYMTKPFSFSELLARIHALIRRSTRVAEPSALSAGN 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
           + +    R+ +  GE   LP RE  +LE+L+ N+G+ V+KT I   +Y   FD   + NV
Sbjct: 133 LTLDLLTREVKRGGEEISLPAREFALLEHLVRNKGRIVSKTSILEHVYDYSFDP--QTNV 190

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+  + ++R K+        + + R +GY
Sbjct: 191 VDVLVCRVRNKVDKDFDRKLIHTVRGMGY 219


>gi|294792553|ref|ZP_06757700.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27]
 gi|294794344|ref|ZP_06759480.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44]
 gi|313894218|ref|ZP_07827783.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412]
 gi|294454674|gb|EFG23047.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44]
 gi|294456452|gb|EFG24815.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27]
 gi|313441042|gb|EFR59469.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129
           +  P++ ++   SLQ  +   ++G DD + KP    E+ AR+ A+ RR  + + N    G
Sbjct: 71  NTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNARHAQNDIHVG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P+ +    R  +  GE   L  +E  +L YL +N    +++ QI   ++  +D     N+
Sbjct: 131 PLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE-YDYESYSNL 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ +I  LRKK+        + + R +GY
Sbjct: 190 IDVYIKDLRKKIDTDENVKLIQTVRGVGY 218


>gi|229082837|ref|ZP_04215265.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228700472|gb|EEL53030.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++   S    L   + G DD + KP +   +LARV  I RR   +
Sbjct: 63  ICREIRKTSDVPIIMVTSRNSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +T  I ++ D            Q +   L + E +IL  L+ NRG  V +  +   
Sbjct: 120 SGDFKTNHILIYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           ++   D  V+++ +  +I++LRKKL  ++G  +P+ ++R LGY
Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLE-EIGIENPIATRRSLGY 220


>gi|166031592|ref|ZP_02234421.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
 gi|166028569|gb|EDR47326.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D + +++  I      G    GF   + +E+L++ A E    I   ++  G   
Sbjct: 1   MIFCVEDDSNIRELVIYTLETTGFKARGFE--DGKEFLEALALETPELILLDIMLPGMDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LEL   ++A  +   +P+I ++   +    +   D+G DD V KP    E+++R+ A+ R
Sbjct: 59  LELLSKLKASPKNRDIPVIMLTAKGAEYDKVKALDAGADDYVTKPFGMMELVSRIKAVLR 118

Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +      +     G I + +   +    GEV  L  +E  +L+ LM N    + +  +
Sbjct: 119 RTQKDTQDPQDVIVLGDIEMNTKKHEVTADGEVVTLTLKEYELLKRLMKNPNIVMTRDCL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +D   E   V+ H+  LR+KL  K G + +++ R +GY +
Sbjct: 179 LEDIWG-YDFDGETRTVDVHVRTLRQKL-GKSG-EKIETVRGVGYRM 222


>gi|161523860|ref|YP_001578872.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341289|gb|ABX14375.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
          Length = 225

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 65  IDVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 123

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 124 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 182 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 221


>gi|68347297|gb|AAY94903.1| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf-5]
          Length = 229

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 19/227 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  I  F   G   EGF +        +   +  S  +  ++  G   +
Sbjct: 7   ILIVEDEAAIADTLI--FALQG---EGFTTTWLSLGRAALEHQQASPADLIILDIGLPDI 61

Query: 62  ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E  + +R  S+VP++ +S        +   + G DD V KP   RE+ ARV AI +R
Sbjct: 62  SGFETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +           + V     DPE      +G+   L R E R+L+ L+    +  ++ Q+
Sbjct: 122 MVPRVAPEAVAALFVI----DPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQL 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A+  + D   E N ++SHI  LR KLR      +P+ + R LGYS
Sbjct: 178 LDALGVMADVGYERN-IDSHIKSLRAKLRLVAAQAEPIQTHRGLGYS 223


>gi|111657541|ref|ZP_01408282.1| hypothetical protein SpneT_02001263 [Streptococcus pneumoniae
           TIGR4]
          Length = 231

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 73  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 132

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 133 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 191

Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +  +GF  +++K+ +GY +
Sbjct: 192 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 228


>gi|326793099|ref|YP_004310920.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543863|gb|ADZ85722.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 225

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL ++ + +  +P+I ++        +   D G DD V KP   RE+++R+ ++ RR   
Sbjct: 61  ELCKVAKENRDIPVIFLTACDDEVNVVMGLDMGADDYVTKPFRIRELISRIKSVLRR--- 117

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175
            N    T  I  +++ R   ++ +V+       L   E R+L   + + G+ +++ Q+  
Sbjct: 118 HNKTDSTKAIFNYNNIRINTLEAKVYKNNKEVQLTALEYRLLLTFITHEGQALSRNQLLE 177

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            I+ +  + V +N V  +I +LR KL +  G +P  + + R +GY +
Sbjct: 178 GIWDIAGDFVNDNTVTVYIKRLRDKLEDDPG-NPTFITTIRGIGYKV 223


>gi|228477550|ref|ZP_04062183.1| transcriptional activator protein CopR [Streptococcus salivarius
           SK126]
 gi|228250694|gb|EEK09892.1| transcriptional activator protein CopR [Streptococcus salivarius
           SK126]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 2/129 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ G DD + KP +  E+  R+ A+ +R  K   N    G +RV        V  +   L
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKFDQNTLSFGDVRVNLATNSTFVGDKEVEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L Y + N+   + K+QIF  ++G FD     +VVE ++SK+RKKL+       
Sbjct: 151 LGKEFDLLVYFLQNQNVILPKSQIFDRLWG-FDSDTTVSVVEVYVSKIRKKLKGTDFATN 209

Query: 210 VDSKRFLGY 218
           + + R +GY
Sbjct: 210 LQTLRSVGY 218


>gi|237731111|ref|ZP_04561592.1| DNA-binding transcriptional regulator PhoP [Citrobacter sp. 30_2]
 gi|226906650|gb|EEH92568.1| DNA-binding transcriptional regulator PhoP [Citrobacter sp. 30_2]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ RR   +++      P 
Sbjct: 74  LPILVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALMRRNSGLASQIISLPPF 133

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 134 QVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 192

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + +LRKK++ +   D + + R  GY
Sbjct: 193 VLMGRLRKKIQAQYPDDVITTVRGQGY 219


>gi|167584571|ref|ZP_02376959.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 220

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 26/164 (15%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R    +P I I+    L   +   DSG DD + KP    E+LAR+ A+ RR      RA+
Sbjct: 68  RRDETLPAIVITARDGLSDRIAGLDSGADDYLVKPFALEELLARIRAVNRR---HAGRAQ 124

Query: 128 T----GPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           T    GP+R       V+ D  D EV      L  +E  +L  LM   G  +++ Q    
Sbjct: 125 TTLAVGPLRLDPVKHLVWLD--DAEVT-----LSPKEFVLLHELMREPGAVISREQFEER 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +Y  + E +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 178 LYS-WGEEIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216


>gi|26987013|ref|NP_742438.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24981631|gb|AAN65902.1|AE016218_4 DNA-binding response regulator GltR [Pseudomonas putida KT2440]
          Length = 239

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 13/187 (6%)

Query: 28  GFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           G+N L   +  Q     AR  V  +   L+  GE  L L R ++A   + +I +S   S 
Sbjct: 26  GYNVLAAADGQQMRDQLARHKVELVVLDLMLPGEDGLSLCRQLQATPGLAVIMLSAKGST 85

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI--RVFSDGRDPEV 142
              +   + G DD + KP   RE++AR+ A+ RR +     AE   +  ++F+  R   V
Sbjct: 86  LDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQRLGTSAEEPMVDAQLFAGFRLEHV 145

Query: 143 Q-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
           +       GE   LPR + R+L  L+    + V++ Q+  + +G  D   ++  V+  +S
Sbjct: 146 KRLLTRPDGETLTLPRSDYRVLRELLEANNRVVSRDQLTRSAFG-RDHLPDDRSVDMCVS 204

Query: 196 KLRKKLR 202
           +LR++LR
Sbjct: 205 RLRQQLR 211


>gi|70725698|ref|YP_252612.1| hypothetical protein SH0697 [Staphylococcus haemolyticus JCSC1435]
 gi|123660954|sp|Q4L8L9|HSSR_STAHJ RecName: Full=Heme response regulator hssR
 gi|68446422|dbj|BAE04006.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 91/183 (49%), Gaps = 6/183 (3%)

Query: 40  SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           ++ + D++ ++  + G      EL ++++    +P+I ++   +L      F SG DD V
Sbjct: 42  ANNKVDIAVVDIMMTGMDG--FELCQLLKNDYDLPVIMLTARDALSDKERAFVSGTDDYV 99

Query: 100 NKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
            KP   +E+L R+ A+ RR ++ S +  + G + +  +  +  V  +   LP +E ++L 
Sbjct: 100 TKPFEVKELLFRIQAVLRRYQINSQDIIKLGNVTLIQEYMELSVDSKNVNLPTKEFQLL- 158

Query: 159 YLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           +L+  + K +  +  +   I+G FD   +E  ++ HI +LR +L        + + R  G
Sbjct: 159 FLLCGQPKHIFTRDTLIERIWG-FDYEGDERTIDVHIKRLRHRLNQLKATIEIQTVRGQG 217

Query: 218 YSI 220
           Y +
Sbjct: 218 YRV 220


>gi|312128701|ref|YP_003993575.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778720|gb|ADQ08206.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSN- 123
           IR  S+VP++ IS        +   + G DD + KP     + A+V A+ RR    VSN 
Sbjct: 67  IRKISKVPIMFISSASDNMNIIMAINMGGDDFIEKPFDLNVLTAKVHALIRRTYSFVSNI 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + +  +      Q +   L + E +IL+ LM N G+ V++ +I   ++   D 
Sbjct: 127 NLIEHKGVILNLNNTTLLYQNKKIELTKNEYKILQLLMENAGRVVSREEIMQHLWQ-SDS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            +++N +  +I++LRKKL  +LG +  + +K+ +GY I+
Sbjct: 186 FIDDNTLTVNITRLRKKLA-ELGLENFIKTKKGIGYIIE 223


>gi|240137869|ref|YP_002962341.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
 gi|240007838|gb|ACS39064.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
          Length = 220

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 14/195 (7%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89
              + E  L +SA   +      L G G  VL   R  R + + P++ ++   ++   + 
Sbjct: 32  TCADAETALATSAFSAIVLDLMLLDGSGLDVLRALR--RRNDRTPVVLLTARDAVADRIA 89

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGE 145
             D G DD + KP    E+ AR+ A+ RR   ++ RA    E G IR+        + G 
Sbjct: 90  GLDGGADDYLGKPFDLDELSARIRAVVRR---ASGRAAAILEHGGIRLDPGSLAVTIDGL 146

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              + RRE  +L  LM       +K+++   +YG + E VE N VE H+  LR     K+
Sbjct: 147 PVAVSRREVMVLAALMERPDVLRSKSELEERLYG-WQEEVESNAVEVHVHNLRA----KI 201

Query: 206 GFDPVDSKRFLGYSI 220
           G   +++ R LGY +
Sbjct: 202 GKHAIETVRGLGYRM 216


>gi|254423455|ref|ZP_05037173.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190944|gb|EDX85908.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 226

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 12/157 (7%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           + +P+I ++    +   +   + G DD V KP    E+LARV    R+   + + A    
Sbjct: 72  ATLPIIILTARDDIHDKVTGLEGGADDYVTKPFRFEELLARVRVRLRQAPAAGSAATGND 131

Query: 131 IRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             +++         R  +V GE+  LP RE  + E    + G+ +++ Q+   ++G +D 
Sbjct: 132 QMLWASNVSLDLLTRRVQVSGEIVDLPAREFTLAETFFRHPGQVLSREQLLDRVWG-YDY 190

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   N+V+ ++  LRK    KLG D +++ R +GY +
Sbjct: 191 SPGSNIVDVYVGYLRK----KLGADLIETVRGIGYRL 223


>gi|190567143|ref|ZP_03020058.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|190561647|gb|EDV15617.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
          Length = 232

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     E   L ++E  + E L++   +  ++  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG +    ++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIDETVRGLGY 224


>gi|167616629|ref|ZP_02385260.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257143130|ref|ZP_05591392.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 220

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 12/162 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R    +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---Q 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             RA+T    G +R+          G+   L  +E  +L  LM   G  +++ Q    +Y
Sbjct: 120 TGRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + E +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216


>gi|149006700|ref|ZP_01830386.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147761615|gb|EDK68579.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|332072800|gb|EGI83281.1| response regulator [Streptococcus pneumoniae GA17545]
          Length = 225

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +  +GF  +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222


>gi|153956437|ref|YP_001397202.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146349295|gb|EDK35831.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 231

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 13/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ ++      + +    SG DD + KP    E++ARV ++ RR    N   
Sbjct: 68  IRQTSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTRFNTTG 127

Query: 127 ETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
           +      +       D R    Q   F LP +E  +L +   N+GK + K QI+  ++G 
Sbjct: 128 DHSQPLTYQGLTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYEEVWGE 187

Query: 180 --LFDEAVEENVVESHISKLRKKL 201
             ++D++   N++ + IS+LRKK+
Sbjct: 188 AYVYDDS---NIM-AIISRLRKKI 207


>gi|238018371|ref|ZP_04598797.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748]
 gi|237864842|gb|EEP66132.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129
           +  P++ ++   SLQ  +   ++G DD + KP    E+ AR+ A+ RR  + + N    G
Sbjct: 71  NTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNARHAQNDIHVG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P+ +    R  +  GE   L  +E  +L YL +N    +++ QI   ++  +D     N+
Sbjct: 131 PLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE-YDYESYSNL 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ +I  LRKK+        + + R +GY
Sbjct: 190 IDVYIKDLRKKIDTDENVKLIQTVRGVGY 218


>gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 78/143 (54%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD + KP +  E++ARV +  RR K     +
Sbjct: 73  IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKKYNTSI 132

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++N++  E G + V +D R   ++G+   L  +E  ILE L +N+G  ++  +I+ A++ 
Sbjct: 133 NHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFDILELLASNKGIVLSVAKIYEAVWK 192

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 193 EVFYKS--DNTVMVHITKIRDKI 213


>gi|206972852|ref|ZP_03233774.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229072980|ref|ZP_04206174.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|206731736|gb|EDZ48936.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228710098|gb|EEL62078.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++   S    L   + G DD + KP +   +LARV  I RR   +
Sbjct: 63  ICREIRKTSDVPIIMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +T  I ++ D            Q +   L + E +IL  L+ NRG  V +  +   
Sbjct: 120 SGDLKTNHILMYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           ++   D  V+++ +  +I++LRKKL  ++G  +P+ ++R LGY
Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLE-EIGIENPIATRRSLGY 220


>gi|167585588|ref|ZP_02377976.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 220

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IDVLRTLRARGLALPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 119 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216


>gi|161501958|ref|YP_262771.2| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf-5]
          Length = 226

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 19/227 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  I  F   G   EGF +        +   +  S  +  ++  G   +
Sbjct: 4   ILIVEDEAAIADTLI--FALQG---EGFTTTWLSLGRAALEHQQASPADLIILDIGLPDI 58

Query: 62  ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E  + +R  S+VP++ +S        +   + G DD V KP   RE+ ARV AI +R
Sbjct: 59  SGFETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKR 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +           + V     DPE      +G+   L R E R+L+ L+    +  ++ Q+
Sbjct: 119 MVPRVAPEAVAALFVI----DPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A+  + D   E N ++SHI  LR KLR      +P+ + R LGYS
Sbjct: 175 LDALGVMADVGYERN-IDSHIKSLRAKLRLVAAQAEPIQTHRGLGYS 220


>gi|117920171|ref|YP_869363.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117612503|gb|ABK47957.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 227

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR          +G 
Sbjct: 75  KAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVITSGE 134

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +++    +   +  EV  +   E  ILEYLM +  + VAK ++   IYG  D+  + N +
Sbjct: 135 LKLDLAAKQVTLANEVMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDPNTI 192

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 193 EVMVSRLRKKLTRDGIDNPIVTIRGQGYKFN 223


>gi|315648883|ref|ZP_07901977.1| two component transcriptional regulator [Paenibacillus vortex V453]
 gi|315275564|gb|EFU38918.1| two component transcriptional regulator [Paenibacillus vortex V453]
          Length = 219

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA++ +P+I ++   SL   +  F+ G +D + KP    E+LAR+  + RR K 
Sbjct: 62  ELMQHIRAYN-IPVIFLTAKESLSDRITGFELGAEDYIIKPFEIVELLARINVVLRRAKP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S++    G   V    R      +   L  RE  +LE L+ NR   +++ ++   ++G +
Sbjct: 121 SDDLFVLGEAEVKLLERQVLKNDQPVELTAREFDLLEVLIRNRNIALSREKLLELVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKL 201
           D   E   V+ HI +LRKKL
Sbjct: 180 DFLGETRTVDVHIRQLRKKL 199


>gi|315038843|ref|YP_004032411.1| two-component system regulator [Lactobacillus amylovorus GRL 1112]
 gi|325957282|ref|YP_004292694.1| two-component system regulator [Lactobacillus acidophilus 30SC]
 gi|312276976|gb|ADQ59616.1| two-component system regulator [Lactobacillus amylovorus GRL 1112]
 gi|325333847|gb|ADZ07755.1| two-component system regulator [Lactobacillus acidophilus 30SC]
 gi|327184012|gb|AEA32459.1| two-component system regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L  +  +D  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 38  LDDALSQDFDAILLDLMLPDLNGLEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPIRVFSDGRDPEVQ----------GEV 146
            + KP    E+LAR+ A+ RR+K+  + ++ T   +     +D  ++          G+ 
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVKIEKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKA 157

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L +RE  +L  L+ N+   V++ Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 158 IDLTKREYNLLMTLIENKNNVVSRDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211


>gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 231

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 12/175 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   LE+ R IR  S  P+I ++        +   ++G DD V KP    E+ AR+
Sbjct: 60  LVLPGRSGLEVCREIRRVSTTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARI 119

Query: 113 AAIYRRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            A+ RR   S  R     G + +          GEV PL R E  +L  L   RG+  ++
Sbjct: 120 RALARRTGGSGPRPRIVVGDLEIAPADGVVTRGGEVVPLTRTEFTLLLELATERGRVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
            ++   ++G +D   +  +V+ H+ +LRKK+      DP     V + R +GY +
Sbjct: 180 EELLERVWG-YDYFGDSRLVDVHVRRLRKKVEA----DPAAPTVVTTVRGMGYRL 229


>gi|167769243|ref|ZP_02441296.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
           17241]
 gi|167668883|gb|EDS13013.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 14/204 (6%)

Query: 27  EGFNSLEFEEWLQSSAR----EDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           EGF  +E  +  Q+  +    EDV  +   ++   +   +  R IR  S VP++ ++   
Sbjct: 25  EGFKVVEAADGQQAVEKFEDNEDVVLVMLDVMMPKKDGYDACREIRGKSNVPILMLTARD 84

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVFSDGRDP 140
           S Q  +  F +G D+ + KP     ++ RV  + RR   SN+ ++   G ++V    R  
Sbjct: 85  SEQDEVAGFGAGADEYIAKPFSPTILVTRVKNLLRRTS-SNDMSDVSAGGVKVLYRERTV 143

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
            V G+      +E  +L YL+ N    + + QI   ++ + D A ++  V++HI    K 
Sbjct: 144 TVDGKKIITTPKEFDLLYYLIRNTNIVLTRDQIICTVWDM-DYAGDDRTVDTHI----KC 198

Query: 201 LRNKLG--FDPVDSKRFLGYSIDW 222
           LR KLG     + + R +GY  +W
Sbjct: 199 LRAKLGPYAKCIVTVRKVGYKFEW 222


>gi|92113096|ref|YP_573024.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91796186|gb|ABE58325.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 227

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 2/111 (1%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD + KP   RE++ARV A+ RRL      A T  P+ +  DG     QG    L   
Sbjct: 96  GADDYICKPFSPREVVARVKAVLRRLHPQTEEAATPAPLSLDEDGWRALAQGTDLGLTAV 155

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           E ++L+ +M   G+  ++ Q+   +Y      V E  V+SHI KLR+K+ +
Sbjct: 156 EFQLLKVMMQAPGRIFSRDQLMDHMYR-DHRIVSERTVDSHIKKLRRKIAD 205


>gi|167967698|ref|ZP_02549975.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis H37Ra]
 gi|61229967|sp|P0A5Z6|PRRA_MYCTU RecName: Full=Transcriptional regulatory protein prrA
 gi|61229968|sp|P0A5Z7|PRRA_MYCBO RecName: Full=Transcriptional regulatory protein prrA
 gi|90108539|pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
           From Mycobacterium Tuberculosis
 gi|90108540|pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
           From Mycobacterium Tuberculosis
 gi|90108541|pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
           Comlexed With Mg2+
 gi|90108542|pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
           Comlexed With Mg2+
          Length = 233

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 15/207 (7%)

Query: 23  GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75
           G+ L GF    +++  E L+S+      AI   ++     VL+   ++ A     + VP+
Sbjct: 26  GLRLSGFEVATAVDGAEALRSATENRPDAI---VLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131
             +S   S+   +   ++G DD + KP    E++ARV A+ RR    + + +ET   GP+
Sbjct: 83  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPL 142

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+
Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 201

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I  LR+KL    G   + + R +G+
Sbjct: 202 VFIGYLRRKLEAGGGPRLLHTVRGVGF 228


>gi|228993584|ref|ZP_04153492.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228766175|gb|EEM14821.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 231

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS        +   +SG DD + KP H+  ++A++    RR+     
Sbjct: 65  RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S    E   +++F +  +     +   L ++E  + E L++   +   +  + +A++
Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGTKQVLLTKKEAILAEMLLSKHPRTANREDLLAALW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              DE+ VEEN +  +I++LRKK  N+LG  + +++ R LGY
Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223


>gi|170016759|ref|YP_001727678.1| response regulator [Leuconostoc citreum KM20]
 gi|169803616|gb|ACA82234.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R   + P+I ++   S+   +   D G DD + KP    E+LAR+ ++ RR+ 
Sbjct: 61  LEVARRLRESKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIA 120

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    ++          +R+  + R      ++  L +RE  +L  L+ N     ++ Q+
Sbjct: 121 IETESSDKHRAIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G FD  VE NVV+ +I  LR K+
Sbjct: 181 LKEVWG-FDSEVETNVVDVYIRYLRNKI 207


>gi|104781839|ref|YP_608337.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95110826|emb|CAK15541.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 220

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 15/167 (8%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL R +RA    +P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IELLRRVRAGGDSLPVLILTARDALDDRISGLDAGADDYLVKPFDLNELKARLRALLRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             S  RA+   I       DP  Q     G    L  +E R+L  L+A  GK   + ++ 
Sbjct: 119 --SAGRAKV-LIEHAGVSLDPATQQVHYNGMEIVLTPKEYRLLHELLAQPGKVFTRERLT 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +YG +DE  E N +E +I  LRKKL N L    + + R +GY ++
Sbjct: 176 QLLYG-WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217


>gi|323357907|ref|YP_004224303.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323274278|dbj|BAJ74423.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 244

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 6/162 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L RI  A +  P++ ++   +++  +    +G DD V KP +  E++ R+  + RR    
Sbjct: 82  LTRIRAAGNDAPVLFLTAKDAVEDRIAGISAGADDYVTKPFNLEEVVVRLRGMARRHVAA 141

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  ++ R   G + +  +  + E  G    L  +E  +L YLM N  + ++K QI   ++
Sbjct: 142 IADADPRLRVGDLSLDEESYEVERGGIPIKLTAKEFELLRYLMQNPRRVLSKAQILDQVW 201

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D     +VVE +IS LRKK+ + LG   + + R +GY+I
Sbjct: 202 S-YDFGGNGSVVEIYISYLRKKI-DSLGEPLIHTVRGVGYTI 241


>gi|163855906|ref|YP_001630204.1| two-component transcriptional regulator [Bordetella petrii DSM
           12804]
 gi|163259634|emb|CAP41935.1| two-component transcriptional regulator [Bordetella petrii]
          Length = 235

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ +S   +L   +    +G DD + KP    E+ ARV A+ RR      R +    
Sbjct: 74  KTPVLVLSALTALDERVRGLKAGGDDYLTKPFAFPELAARVEALIRRSSSGYERRQLTVA 133

Query: 132 RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +  D    +V   G    L  RE ++L Y+M N G+ + +T + + ++G +    + NV
Sbjct: 134 DLSLDLVSGQVARGGRAITLQPREYKLLAYMMNNAGQVLTRTMLLATVWG-YHYDPQTNV 192

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ HIS+LR+K+        + + R +GY +
Sbjct: 193 IDVHISRLRQKIDGPGEAPLIHTVRGVGYRL 223


>gi|85706948|ref|ZP_01038038.1| two component transcriptional regulator, winged helix family
           protein [Roseovarius sp. 217]
 gi|85668559|gb|EAQ23430.1| two component transcriptional regulator, winged helix family
           protein [Roseovarius sp. 217]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+   E+ R +RA     P++ ++    +   +   D+G DD + KP   RE+LAR   +
Sbjct: 56  GKSGYEILRSLRARGDATPVLILTARSQIDERVVGLDAGADDYMVKPFDFRELLARCRVL 115

Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR    ++N    G +      +   V G+   L  RE ++LE L+ N G+ + K ++ 
Sbjct: 116 ARRRSGTASNIFVAGGLSFDRAAKRAIVAGKDVDLRAREVQLLEILIDNLGRMLTKEEVA 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
             +Y  FDE+   N VE  +++LR+KL +     P  + + R LGY
Sbjct: 176 DKLYS-FDESPSMNAVEQIVTRLRRKLHDT----PLVIKTARGLGY 216


>gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241]
 gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L]
 gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1]
 gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055]
 gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Western North America USA6153]
 gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger
           B]
 gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Vollum]
 gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Australia 94]
 gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI]
 gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241]
 gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L]
 gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1]
 gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar
           anthracis str. CI]
 gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 235

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 23  LEKEGFEIVMAHDG-----------DEAIEKATEEQPDMVLLDIMLPGKDGLEVCREIRK 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 72  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 131

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI +  +      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 132 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 190

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 191 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|330966561|gb|EGH66821.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 247

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 96/196 (48%), Gaps = 15/196 (7%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           VS+EG  +L     +    + D+  ++  L   GE    + R +R     P++ ++    
Sbjct: 34  VSIEGNGALAASRIIDE--QPDLVILDLML--PGEDGFSICRTVRDRYDGPILMLTARTD 89

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN------NRAETGPIRVFSDG 137
               +   D+G DD V KP+H R +LAR+ A+ RR +          R   GP+ V +  
Sbjct: 90  DTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRRLVFGPLVVDNAL 149

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R+  ++ +   L   E  +L  L+AN G+ +++ +IF+A+ G+  +  ++  ++  IS++
Sbjct: 150 REAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFTALRGVGYDG-QDRSIDVRISRI 208

Query: 198 RKKLRNKLGFDPVDSK 213
           R     K+G DP+  +
Sbjct: 209 RP----KIGDDPIHPR 220


>gi|328468880|gb|EGF39840.1| DNA-binding response regulator [Vibrio parahaemolyticus 10329]
          Length = 218

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR    ++P++ ++    ++  +   D G DD + KP    E+LAR+  + RR 
Sbjct: 60  LEVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQ 119

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             S     + G + +    +          L R E +IL  LM N G+  +K Q+  +++
Sbjct: 120 SGSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLH 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
           G +DE   +N +E HI  LRKK  N
Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKKAPN 203


>gi|309811888|ref|ZP_07705661.1| putative transcriptional regulatory protein PrrA [Dermacoccus sp.
           Ellin185]
 gi|308434177|gb|EFP58036.1| putative transcriptional regulatory protein PrrA [Dermacoccus sp.
           Ellin185]
          Length = 291

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 43/224 (19%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95
           WL S A  DV  I +   G  +  + +   +R   +  P++ ++        +D  D+G 
Sbjct: 56  WLASEAEPDVIVICSARPGTHD--VPVVTALRGDGERAPILVMARRSESADLVDVLDAGA 113

Query: 96  DDVVNKPIHHREILARVAAIYRR--------LKVSN---NRAETGPIRVFSD------GR 138
           DDVV  P+   E+ AR+ A+ RR        L+V     +RA    +R   D      G 
Sbjct: 114 DDVVTSPVPFAEVAARLRALTRRAPHLVEDELRVGTLRLDRAARVAVRTLDDATTSDAGS 173

Query: 139 DPEVQGEVFPLP----------------------RRERRILEYLMANRGKRVAKTQIFSA 176
           D    G+    P                       RE  +LE LM N G  V++ +I   
Sbjct: 174 DHASIGDALAEPGGATTRDVVSGAQGGEVAIDLTAREYAVLELLMRNAGHVVSRARIVDD 233

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D A   N+V+  +S LR+KL    G   + + R +GY I
Sbjct: 234 VWGGLDAAT-SNLVDQVVSHLRRKLDRPFGRHDITTVRGVGYRI 276


>gi|229553588|ref|ZP_04442313.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229313213|gb|EEN79186.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 246

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 4/155 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA + VP+I ++   + Q  +    +G DD V KP    E+ AR+ A  RR    + +A
Sbjct: 89  IRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRRAHQPDKQA 148

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G I +        V      L  ++ +++E+L  N G+  ++ Q++  I+G +D 
Sbjct: 149 QIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYEKIWG-YDA 207

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             +E V+  HI ++RK         P+ +   +GY
Sbjct: 208 QGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGY 242


>gi|255532348|ref|YP_003092720.1| transcriptional regulator domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255345332|gb|ACU04658.1| transcriptional regulator domain protein [Pedobacter heparinus DSM
           2366]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 2/166 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  LP+  + +     I ++   +L+  +   D G DD + KP    E+ +R+ AI 
Sbjct: 57  GDGLTLLPKAKKHNPDAAYIILTARGNLEDRIAGLDLGADDYLPKPFSLLELQSRMQAIA 116

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   +       G  ++    R     G+   L R+E  IL YL  +  + + + Q+  
Sbjct: 117 RRKFNLKEELLPLGDFKLDLQKRLIFFNGQQIELSRKEFDILSYLFLHSNRVLTRMQLSE 176

Query: 176 AIYGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G F D+  + N +++HI  +RKKL      + +++ R +GY I
Sbjct: 177 HIWGTFADDDYDSNYIDAHIKNIRKKLNAWAATNFLETVRGVGYRI 222


>gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
 gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
          Length = 236

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 78/145 (53%), Gaps = 8/145 (5%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA S Q+P++ ++   + +  +   ++G DD + KP H +E+L RV  + +R +
Sbjct: 67  EVAREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKRKQ 126

Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +  +  P+  F +          + + E F L  RE  +L+YL+ + G+ V++ ++ 
Sbjct: 127 WYQDVTQQEPVVRFGENTVNFATLRAQTRKEEFQLTAREAMVLKYLIEHEGRVVSRKELL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRK 199
             ++ + +  V+   V++ I++LRK
Sbjct: 187 ENVWQV-EGTVQTRTVDAFIARLRK 210


>gi|239617104|ref|YP_002940426.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505935|gb|ACR79422.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 226

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + ++ R + ++P+I ++   S    +   + G DD + KP + R ++AR+ A+ RR ++ 
Sbjct: 63  IKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEMG 122

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N  + G I +  +       G+   LPR+E  +L+ ++ N GK   + +I   ++G
Sbjct: 123 PKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + D   +   V+ HISKLR+    K+G + + + R +GY +
Sbjct: 183 M-DFFGDFRTVDVHISKLRE----KIGSEFIKTVRGVGYKL 218


>gi|152969690|ref|YP_001334799.1| DNA-binding transcriptional regulator PhoP [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206579731|ref|YP_002239238.1| transcriptional regulatory protein PhoP [Klebsiella pneumoniae 342]
 gi|288936097|ref|YP_003440156.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290510851|ref|ZP_06550221.1| two-component system, OmpR family, response regulator PhoP
           [Klebsiella sp. 1_1_55]
 gi|330016190|ref|ZP_08308420.1| virulence transcriptional regulatory protein PhoP [Klebsiella sp.
           MS 92-3]
 gi|150954539|gb|ABR76569.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206568789|gb|ACI10565.1| transcriptional regulatory protein PhoP [Klebsiella pneumoniae 342]
 gi|288890806|gb|ADC59124.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289777567|gb|EFD85565.1| two-component system, OmpR family, response regulator PhoP
           [Klebsiella sp. 1_1_55]
 gi|328529475|gb|EGF56380.1| virulence transcriptional regulatory protein PhoP [Klebsiella sp.
           MS 92-3]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E  L L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ 
Sbjct: 57  EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALL 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   +++      P +V    R+  V  +   L   E  I+E L+ NRGK V+K  +  
Sbjct: 117 RRNSGLASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLML 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y    E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 177 QLYP-DAELRESHTIDVLMGRLRKKIQAEYPQDVITTVRGQGY 218


>gi|187478800|ref|YP_786824.1| two-component system response regulator [Bordetella avium 197N]
 gi|115423386|emb|CAJ49920.1| two-component system response regulator [Bordetella avium 197N]
          Length = 231

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA +S +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G +     GR   V      L  RE  +LE L++  G+ V+KTQ+   + 
Sbjct: 120 AGGGSTLIRHGRLVFDQTGRVATVDDHALDLSAREVSLLEILLSRSGRMVSKTQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKKL    G   + + R LGY ++
Sbjct: 180 E-WGEEVSTNAIEVYVHRLRKKLEPS-GVKII-TVRGLGYCLE 219


>gi|15641643|ref|NP_231275.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591202|ref|ZP_01678505.1| DNA-binding response regulator [Vibrio cholerae 2740-80]
 gi|121728924|ref|ZP_01681931.1| DNA-binding response regulator [Vibrio cholerae V52]
 gi|147675175|ref|YP_001217188.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|153216915|ref|ZP_01950679.1| DNA-binding response regulator [Vibrio cholerae 1587]
 gi|153801571|ref|ZP_01956157.1| DNA-binding response regulator [Vibrio cholerae MZO-3]
 gi|153819736|ref|ZP_01972403.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457]
 gi|153823944|ref|ZP_01976611.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|153826176|ref|ZP_01978843.1| DNA-binding response regulator [Vibrio cholerae MZO-2]
 gi|153830672|ref|ZP_01983339.1| DNA-binding response regulator [Vibrio cholerae 623-39]
 gi|227081790|ref|YP_002810341.1| DNA-binding response regulator [Vibrio cholerae M66-2]
 gi|229508249|ref|ZP_04397754.1| DNA-binding response regulator [Vibrio cholerae BX 330286]
 gi|229511512|ref|ZP_04400991.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|229515034|ref|ZP_04404494.1| DNA-binding response regulator [Vibrio cholerae TMA 21]
 gi|229518651|ref|ZP_04408094.1| DNA-binding response regulator [Vibrio cholerae RC9]
 gi|229520763|ref|ZP_04410186.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80]
 gi|229523733|ref|ZP_04413138.1| DNA-binding response regulator [Vibrio cholerae bv. albensis VL426]
 gi|229529329|ref|ZP_04418719.1| DNA-binding response regulator [Vibrio cholerae 12129(1)]
 gi|229607823|ref|YP_002878471.1| DNA-binding response regulator [Vibrio cholerae MJ-1236]
 gi|254226103|ref|ZP_04919700.1| DNA-binding response regulator [Vibrio cholerae V51]
 gi|254285418|ref|ZP_04960383.1| DNA-binding response regulator [Vibrio cholerae AM-19226]
 gi|254848758|ref|ZP_05238108.1| DNA-binding response regulator [Vibrio cholerae MO10]
 gi|255744933|ref|ZP_05418883.1| two-component system response regulator QseB [Vibrio cholera CIRS
           101]
 gi|262161782|ref|ZP_06030800.1| two-component system response regulator QseB [Vibrio cholerae INDRE
           91/1]
 gi|262169653|ref|ZP_06037344.1| two-component system response regulator QseB [Vibrio cholerae RC27]
 gi|262190570|ref|ZP_06048811.1| two-component system response regulator QseB [Vibrio cholerae CT
           5369-93]
 gi|297579217|ref|ZP_06941145.1| DNA-binding response regulator [Vibrio cholerae RC385]
 gi|298498279|ref|ZP_07008086.1| DNA-binding response regulator [Vibrio cholerae MAK 757]
 gi|9656150|gb|AAF94789.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546957|gb|EAX57105.1| DNA-binding response regulator [Vibrio cholerae 2740-80]
 gi|121628810|gb|EAX61272.1| DNA-binding response regulator [Vibrio cholerae V52]
 gi|124114064|gb|EAY32884.1| DNA-binding response regulator [Vibrio cholerae 1587]
 gi|124122898|gb|EAY41641.1| DNA-binding response regulator [Vibrio cholerae MZO-3]
 gi|125621338|gb|EAZ49675.1| DNA-binding response regulator [Vibrio cholerae V51]
 gi|126509727|gb|EAZ72321.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457]
 gi|126518538|gb|EAZ75761.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|146317058|gb|ABQ21597.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|148873852|gb|EDL71987.1| DNA-binding response regulator [Vibrio cholerae 623-39]
 gi|149740117|gb|EDM54282.1| DNA-binding response regulator [Vibrio cholerae MZO-2]
 gi|150424690|gb|EDN16626.1| DNA-binding response regulator [Vibrio cholerae AM-19226]
 gi|227009678|gb|ACP05890.1| DNA-binding response regulator [Vibrio cholerae M66-2]
 gi|227013546|gb|ACP09756.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|229333103|gb|EEN98589.1| DNA-binding response regulator [Vibrio cholerae 12129(1)]
 gi|229337314|gb|EEO02331.1| DNA-binding response regulator [Vibrio cholerae bv. albensis VL426]
 gi|229342318|gb|EEO07313.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80]
 gi|229343340|gb|EEO08315.1| DNA-binding response regulator [Vibrio cholerae RC9]
 gi|229347739|gb|EEO12698.1| DNA-binding response regulator [Vibrio cholerae TMA 21]
 gi|229351477|gb|EEO16418.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|229355754|gb|EEO20675.1| DNA-binding response regulator [Vibrio cholerae BX 330286]
 gi|229370478|gb|ACQ60901.1| DNA-binding response regulator [Vibrio cholerae MJ-1236]
 gi|254844463|gb|EET22877.1| DNA-binding response regulator [Vibrio cholerae MO10]
 gi|255737404|gb|EET92799.1| two-component system response regulator QseB [Vibrio cholera CIRS
           101]
 gi|262021887|gb|EEY40597.1| two-component system response regulator QseB [Vibrio cholerae RC27]
 gi|262028514|gb|EEY47169.1| two-component system response regulator QseB [Vibrio cholerae INDRE
           91/1]
 gi|262033557|gb|EEY52054.1| two-component system response regulator QseB [Vibrio cholerae CT
           5369-93]
 gi|297536811|gb|EFH75644.1| DNA-binding response regulator [Vibrio cholerae RC385]
 gi|297542612|gb|EFH78662.1| DNA-binding response regulator [Vibrio cholerae MAK 757]
 gi|327484248|gb|AEA78655.1| Two-component system response regulator QseB [Vibrio cholerae
           LMA3894-4]
          Length = 219

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 22/219 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL + G++     DG+  +       EEW       DV  ++  L  K + +  L  I  
Sbjct: 19  ALEQTGWVPELAQDGI--DALYRATAEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +  
Sbjct: 69  ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             +   S D R  +V  QG+   L   E +++ Y M N  K +++T++   IY   FD  
Sbjct: 127 MQVGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFMHNPEKVISRTELVEHIYKQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + N +E  I ++RK    K+  D + + R LGY +  N
Sbjct: 186 -DSNTIEVFIGRIRK----KIAPDVIKTVRGLGYQLHAN 219


>gi|302134399|ref|ZP_07260389.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|331016767|gb|EGH96823.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 245

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE    + R +R     P++ ++        +   D+G DD V KP+H R +LAR+
Sbjct: 57  LMLPGEDGFSICRTVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARI 116

Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR +          R   GP+ V +  R+  ++ +   L   E  +L  L+AN G+
Sbjct: 117 HALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 176

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            +++ +IF+A+ G+  +  ++  ++  IS++R     K+G DP+  +
Sbjct: 177 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 218


>gi|282849614|ref|ZP_06258998.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
 gi|282580551|gb|EFB85950.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129
           +  P++ ++   SLQ  +   ++G DD + KP    E+ AR+ A+ RR  + + N    G
Sbjct: 71  NTTPVLLLTAKNSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNARHAQNDIHVG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P+ +    R  +  GE   L  +E  +L YL +N    +++ QI   ++  +D     N+
Sbjct: 131 PLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE-YDYESYSNL 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ +I  LRKK+        + + R +GY
Sbjct: 190 IDVYIKDLRKKIDTDENVKLIQTVRGVGY 218


>gi|260776875|ref|ZP_05885769.1| DNA-binding response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606541|gb|EEX32815.1| DNA-binding response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 232

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 11/149 (7%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ + IR+   + P++ +S   S++  ++   +G DD + KP    E+LARV  +  R 
Sbjct: 60  LQMVKAIRSSGKETPILILSALDSVEERVNGLRNGCDDYLVKPFAFSELLARVELLALRA 119

Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             SN+      + V  D       R  +    V     RE +IL+YLM N G+ + +  +
Sbjct: 120 N-SNSDKTDSQVLVIDDLELDLLSRQAKRGDTVISFNNREFQILQYLMNNAGRVITRAML 178

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKL 201
              ++   FD   + NV++ HIS+LRKK+
Sbjct: 179 LEKVWSFSFDP--QTNVIDVHISRLRKKI 205


>gi|256786504|ref|ZP_05524935.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 20/207 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +   A++              ++   + +  L R+ R    VP++ +
Sbjct: 14  ALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLSVLGRLRRDLPDVPVLFL 73

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134
           +   +++  +    +G DD V KP    E++AR+  + RR   ++ R+++    G + + 
Sbjct: 74  TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSDSVLVVGDLTLD 133

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +    G+   L   E  +L +LM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 134 EDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 192

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           S LR+K+    G +P + ++R  GY I
Sbjct: 193 SYLRRKI--DAGREPMIHTRRGAGYLI 217


>gi|291301488|ref|YP_003512766.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290570708|gb|ADD43673.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 235

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R++R  S VP+I  S        +   ++G DD V KP     +LAR+AA+ RR + S+ 
Sbjct: 65  RMLRGVSNVPVIIASARRGETDIIKLLNAGADDYVTKPFSAAHLLARIAAVLRRHESSDT 124

Query: 125 RAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   GP+ V        + G    L RRE  +L YL  + G+ V+K ++   ++  
Sbjct: 125 AKSVLITVGPLSVDQSRHVAALDGNELELTRREFSLLTYLARHAGRVVSKQELVEQVWRQ 184

Query: 181 FDEAVEENVVESHISKLRKKL 201
                E   V+ H+S LR+KL
Sbjct: 185 PYIGAEAT-VDVHVSWLRRKL 204


>gi|218133615|ref|ZP_03462419.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990990|gb|EEC56996.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
           43243]
          Length = 228

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 3/140 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR +S+VP+I ++     +  L  F+ GVD+ ++KP   + + ARV AI RR+   +   
Sbjct: 74  IRRNSKVPIIMLTAKGEERDELQGFELGVDEYISKPFSPKILTARVDAIIRRVYSKDAGE 133

Query: 127 ETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 +  D      ++ G+   L  +E  +LEY + N+G  +++ +I + ++  +D  
Sbjct: 134 IIEIGGIEMDKSAHVVKIDGQKIDLSFKEFELLEYFIDNKGIALSREKILNNVWN-YDYF 192

Query: 185 VEENVVESHISKLRKKLRNK 204
            +   +++H+ KLRKK+  K
Sbjct: 193 GDARTIDTHVKKLRKKMGEK 212


>gi|196035783|ref|ZP_03103186.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195991750|gb|EDX55715.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 225

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220


>gi|163752506|ref|ZP_02159693.1| transcriptional regulatory protein PhoP [Shewanella benthica KT99]
 gi|161327598|gb|EDP98795.1| transcriptional regulatory protein PhoP [Shewanella benthica KT99]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR       +  
Sbjct: 69  AGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVRPKIT 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           +G + +    +   ++G    +   E  ILEYLM +  + VAK ++   IYG  D+  + 
Sbjct: 129 SGDLELDLAAKQLSMKGVPMDITAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDP 186

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           N +E  +S+LRKKL  +   +P+ + R  GY  +
Sbjct: 187 NTIEVMVSRLRKKLTKEGLENPIATIRGQGYKFN 220


>gi|157374930|ref|YP_001473530.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157317304|gb|ABV36402.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 224

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 3/154 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR       +  
Sbjct: 69  AGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPQIT 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           +G + V    +   +  E   +   E  ILEYLM +  + VAK ++   IYG  D+  + 
Sbjct: 129 SGALEVDLAAKQVSLNNEPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDP 186

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           N +E  +S+LRKKL      +PV + R  GY  +
Sbjct: 187 NTIEVMVSRLRKKLTKGGIENPVVTIRGQGYKFN 220


>gi|153815995|ref|ZP_01968663.1| hypothetical protein RUMTOR_02240 [Ruminococcus torques ATCC 27756]
 gi|145846642|gb|EDK23560.1| hypothetical protein RUMTOR_02240 [Ruminococcus torques ATCC 27756]
          Length = 208

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L+L   IR     P+I ++   S Q  ++   +G DD + KP    E+LAR++A  
Sbjct: 41  GMNGLDLCVSIRDFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHL 100

Query: 117 RRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR + S+N+ ++      I  +SD R   ++G    L  +E  I++ L +N G+   + +
Sbjct: 101 RREQRSHNKTKSKFSEDLIIDYSD-RSLYIKGHKIELSNKEFEIIQLLSSNAGQVFDREK 159

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I+  I+G+ D   +  V++ HI K+R K 
Sbjct: 160 IYENIWGI-DGNGDSVVIKEHIRKIRLKF 187


>gi|159045664|ref|YP_001534458.1| transcriptional regulatory protein QseB [Dinoroseobacter shibae DFL
           12]
 gi|157913424|gb|ABV94857.1| transcriptional regulatory protein QseB [Dinoroseobacter shibae DFL
           12]
          Length = 221

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60
           F+LI+D A +    I     DG  ++  +S+  E W   ++   D+  ++  ++  G+  
Sbjct: 3   FLLIEDHAPLARAVIDRLSLDGHVVDHADSMT-EAWDFMATTSYDLILLD-IMLPDGDGR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R        P+I ++    +   +   D G DD + KPI   E+ AR  A+ RR  
Sbjct: 61  AFLRRCRETAEATPVIVLTARSEVSDRVSILDLGADDYMVKPIDFSELEARCRAVLRRRG 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  NR     +   +     E  G V  L  RE R+ E      G+  +K  +   ++ 
Sbjct: 121 GSAANRLALADLVFDALAGTLETAGGVVQLRTRELRLFETFANAPGQIFSKPALVDRLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FDE V EN +E ++++LR+ L +      + + R LGY +D
Sbjct: 181 -FDEDVTENAIEVYVARLRRHLEHSSV--RITTVRGLGYKLD 219


>gi|28898508|ref|NP_798113.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836151|ref|ZP_01988818.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ3810]
 gi|260365049|ref|ZP_05777620.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260879555|ref|ZP_05891910.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260894970|ref|ZP_05903466.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260901020|ref|ZP_05909415.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28806726|dbj|BAC59997.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750426|gb|EDM61171.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ3810]
 gi|308086020|gb|EFO35715.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308093370|gb|EFO43065.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308110777|gb|EFO48317.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308111621|gb|EFO49161.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
          Length = 218

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR    ++P++ ++    ++  +   D G DD + KP    E+LAR+  + RR 
Sbjct: 60  LEVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQ 119

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             S     + G + +    +          L R E +IL  LM N G+  +K Q+  +++
Sbjct: 120 SGSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLH 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
           G +DE   +N +E HI  LRKK  N
Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKKAPN 203


>gi|116618064|ref|YP_818435.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096911|gb|ABJ62062.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 223

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 3/152 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           + +  +P++ ++    +Q+    F SG+DD + KPI   E+L RV A+ RR  V+N+R  
Sbjct: 69  KINPNIPILFVTAKDDIQSKQRGFSSGIDDYMVKPIDMSEMLMRVTALLRRAHVANDRKL 128

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           T G   + +D     V  +   +  RE  IL  L++   K  +++Q+    +G+ D    
Sbjct: 129 TIGNTVLDADSVSIMVDSQEISVTVREFNILFKLLSYPNKTFSRSQLLDEFWGV-DTTTG 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              V+ +I+KLR K      F+ + +   LGY
Sbjct: 188 LRAVDVYITKLRDKFSGSDVFE-ITTVHGLGY 218


>gi|262039513|ref|ZP_06012815.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
 gi|261746494|gb|EEY34031.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
          Length = 225

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 17/149 (11%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ + +R+ +   P++ ++   S++  +   DSG +D + KP    E+LAR+  + R+  
Sbjct: 61  EVLKTMRSKNIDTPVLFLTAKDSIEDRVKGLDSGANDYLTKPFAFEELLARIRVMLRKDS 120

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   V+N   +T    VF D  D  ++     L +RE  ILEY++ NRGK ++K +
Sbjct: 121 NSSGNVFTVANLTVDTNSHSVFRD--DIPIK-----LSKREFTILEYMIRNRGKILSKDK 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I   I+  +D     NV+E +I  LRKK+
Sbjct: 174 IEQHIWN-YDYEGGSNVIEVYIRYLRKKI 201


>gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 228

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     +
Sbjct: 68  IREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTPI 127

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N++  E G + V +D R   V+G+   L  +E  ILE L+ N+G  ++  +I+ A++ 
Sbjct: 128 DHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLVRNKGIVLSVAKIYEAVWK 187

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208


>gi|199597045|ref|ZP_03210478.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199592178|gb|EDZ00252.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 226

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 4/155 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA + VP+I ++   + Q  +    +G DD V KP    E+ AR+ A  RR    + +A
Sbjct: 69  IRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRRAHQPDKQA 128

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G I +        V      L  ++ +++E+L  N G+  ++ Q++  I+G +D 
Sbjct: 129 QIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYEKIWG-YDA 187

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             +E V+  HI ++RK         P+ +   +GY
Sbjct: 188 QGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGY 222


>gi|153815304|ref|ZP_01967972.1| hypothetical protein RUMTOR_01538 [Ruminococcus torques ATCC 27756]
 gi|317501662|ref|ZP_07959853.1| winged helix family Two component transcriptional regulator
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088455|ref|ZP_08337370.1| hypothetical protein HMPREF1025_00953 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847366|gb|EDK24284.1| hypothetical protein RUMTOR_01538 [Ruminococcus torques ATCC 27756]
 gi|316896913|gb|EFV18993.1| winged helix family Two component transcriptional regulator
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408222|gb|EGG87710.1| hypothetical protein HMPREF1025_00953 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 230

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I IS        +   + G DD V KP     + A+V A+ RR    + + 
Sbjct: 67  IRKISNVPVIFISSAADNMNIIMAVNMGGDDFVPKPFDLSVLTAKVQAVLRRTYDLSGKV 126

Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G I   +D       GE   L + E RIL+ LM N+G+ V++  + + ++   D
Sbjct: 127 PVLEHQGAILNLNDA-SLTYNGEKIDLTKNEFRILQTLMENKGRLVSRDTLMTRLWET-D 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +EEN +  +I++LR+KL      D + +K   GY I
Sbjct: 185 NYIEENTLTVNIARLRRKLDKAGLTDFISTKVGEGYII 222


>gi|146313065|ref|YP_001178139.1| DNA-binding transcriptional regulator QseB [Enterobacter sp. 638]
 gi|145319941|gb|ABP62088.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 219

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 13/206 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L   G   L
Sbjct: 3   ILLVEDDKLIGDGLKAGLTKMGFSVDWFTDGGTGKTALYSAPYDAVVLDLTL--PGMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R   +  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGRSEPVLILTARDALYQRVEGLRLGADDYLCKPFALVEVAARLEALVRR-S 119

Query: 121 VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               R+E   +R  +   DP     ++ GE  PL  +E  +LE LM N G+ + +  I  
Sbjct: 120 HGQTRSE---LRHGNVTLDPVSLVAKLDGETLPLKPKEFALLELLMRNAGRVLPRKNIEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +Y  +D+ V  N VE H+  LR+KL
Sbjct: 177 KLY-TWDDDVSSNAVEVHVHHLRRKL 201


>gi|114706443|ref|ZP_01439345.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina
           pelagi HTCC2506]
 gi|114538304|gb|EAU41426.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina
           pelagi HTCC2506]
          Length = 246

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 5/154 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRAE 127
           +Q+P+I ++        +     G DD V KP   RE  ARV A+ RR    KV++  + 
Sbjct: 75  AQLPVIMLTARGEESERVQGLSVGADDYVVKPFSMREFTARVKAMMRRASPEKVASVLS- 133

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +          G    L   E ++LE+LM   G+   + Q+   ++G  D  V+E
Sbjct: 134 AGDLELDRSAHRVRRAGRELRLGPTEFKLLEFLMQAPGRVFTREQLLDGVWG-RDIYVDE 192

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V+ H+ +LRK +      DP+ + R  GY++D
Sbjct: 193 RTVDVHVGRLRKAINRARDRDPIRTVRGAGYALD 226


>gi|313496697|gb|ADR58063.1| DNA-binding response regulator CreB [Pseudomonas putida BIRD-1]
          Length = 255

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 17/226 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE--GFNSLEFEEWLQSSAREDVSAIEAFLIGKGE- 58
            ++++D A + D  +     DG S E     S   ++  Q  A  D+  ++   IG  + 
Sbjct: 33  ILIVEDEAAIADTLVYALQADGHSTEWVTLGSAALDQQRQRPA--DLVILD---IGLPDI 87

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E  R +R  ++VP++ +S        +   + G DD V KP   RE+ ARV AI +R
Sbjct: 88  SGFETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKR 147

Query: 119 LKVSNNRAE-TGPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +     RAE  G   +F  D    ++  + +   L R E R+L+ L+    +  ++ Q+ 
Sbjct: 148 MA---PRAEAAGGTSLFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLL 204

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            A+ G+  +   E  ++SHI  LR KLR   G  +P+ + R LGYS
Sbjct: 205 DAL-GVASDVGYERTIDSHIKSLRAKLRQVAGDAEPIQTHRGLGYS 249


>gi|238894177|ref|YP_002918911.1| DNA-binding transcriptional regulator PhoP [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546493|dbj|BAH62844.1| response regulator in two-component regulatory system with PhoQ
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 237

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E  L L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ 
Sbjct: 71  EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALL 130

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   +++      P +V    R+  V  +   L   E  I+E L+ NRGK V+K  +  
Sbjct: 131 RRNSGLASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLML 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y    E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 191 QLYP-DAELRESHTIDVLMGRLRKKIQAEYPQDVITTVRGQGY 232


>gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
 gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
          Length = 237

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCRKLRDKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN  A+   I  F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNTTAQEKTILAFKGLTIDLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           +F  ++   D  +E +N V  HI KLRKK+
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKI 210


>gi|254427358|ref|ZP_05041065.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alcanivorax sp. DG881]
 gi|196193527|gb|EDX88486.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alcanivorax sp. DG881]
          Length = 234

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 15/151 (9%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           ++VP+I ++        +   D G DD + KP   RE+++R+ A+ RR   +++ A    
Sbjct: 76  NEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLRR---ASSVAAEKA 132

Query: 131 IRVFSDGRDP---EVQGEVFPLPR--RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           I V     DP    +  + +P+     E R+LE+ M+++ +  ++TQ+   ++G  +  V
Sbjct: 133 IEVEGLCLDPVSHRISADDYPVDMGPTEYRLLEFFMSHQERAYSRTQLLDQVWGA-NVYV 191

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           E+  ++ HI +LRK L       P D  RF+
Sbjct: 192 EDRTIDVHIRRLRKALA------PFDYDRFI 216


>gi|330880142|gb|EGH14291.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 245

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE    + R +R     P++ ++        +   D+G DD V KP+H R +LAR+
Sbjct: 57  LMLPGEDGFSICRTVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARI 116

Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR +          R   GP+ V +  R+  ++ +   L   E  +L  L+AN G+
Sbjct: 117 HALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 176

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            +++ +IF+A+ G+  +  ++  ++  IS++R     K+G DP+  +
Sbjct: 177 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 218


>gi|288905747|ref|YP_003430969.1| essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|306831845|ref|ZP_07465001.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978780|ref|YP_004288496.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732473|emb|CBI14045.1| conserved essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304426043|gb|EFM29159.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178708|emb|CBZ48752.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 236

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 ------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                        SN+    G +++  D    + +GE   L  RE  +L +L  + G+ +
Sbjct: 121 NIETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 TREYLLETVWG-YDYFGDVRTVDVTIRRLREKIED 214


>gi|284046896|ref|YP_003397236.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951117|gb|ADB53861.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 251

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 9/155 (5%)

Query: 54  IGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +G G    E+ R +RA   V P+I ++   S    +   ++G DD V KP    E+ +R+
Sbjct: 76  LGSGPNGYEVCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRI 135

Query: 113 AAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            A+ RR     +  S++  E GPI +    R+  + GE   +   E  +LE LMA+ G+ 
Sbjct: 136 RAVLRRAGPRPMGASDDLVEVGPIALDRARREVRMNGEPVHVTFSEFELLEALMADPGRL 195

Query: 168 VAKTQIFSAIYGLFDEAVEE-NVVESHISKLRKKL 201
             + ++  AI+G  D A  +   ++ H+  LR+KL
Sbjct: 196 RNRQELLRAIWG--DSAYRDPRAIDVHVRHLREKL 228


>gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 12/158 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAE 127
             P++ ++     Q  +     G DD V KP    E++AR+ A+ RR   S    +    
Sbjct: 78  HTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRRTSGSLPDDDALLR 137

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +  D  +    G    L   E ++L YLM N G+ ++K QI   ++  +D   + 
Sbjct: 138 VGDLEMDEDSHEVRRAGIEVDLSPTEFKLLRYLMLNAGRVLSKAQILDHVWQ-YDWGGDA 196

Query: 188 NVVESHISKLRKKLRNKL--GFDP-----VDSKRFLGY 218
           N+VES+IS LR+K+ N    G D      + +KR +GY
Sbjct: 197 NIVESYISYLRRKIDNVTVPGTDEALPALIHTKRGIGY 234


>gi|224024386|ref|ZP_03642752.1| hypothetical protein BACCOPRO_01110 [Bacteroides coprophilus DSM
           18228]
 gi|224017608|gb|EEF75620.1| hypothetical protein BACCOPRO_01110 [Bacteroides coprophilus DSM
           18228]
          Length = 225

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 4/150 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  + +   + V ++   D  SL+  +   D G DD + KP H  E+ AR+ +
Sbjct: 57  GSGLDLLEELKAMGKRTNVIILSAKD--SLEDKVQGLDLGADDYLPKPFHLAELHARIKS 114

Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR +    ++   G I VF D     V+G+   L R+E  IL Y M   G+ V K  +
Sbjct: 115 LLRRNQREGEQSLRFGNIEVFPDRFRVMVEGKEVDLNRKEYDILYYFMCRPGRLVNKNTL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLR 202
             +++G   D+    + + + I  LRK+L+
Sbjct: 175 AESVWGDHIDQVDNFDFIYTQIKNLRKRLK 204


>gi|206560503|ref|YP_002231267.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198036544|emb|CAR52441.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 224

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 12/187 (6%)

Query: 41  SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           SA  D   ++  L G  G  +L   R +   +  P++ +S    +   +    +G DD +
Sbjct: 42  SASYDAITLDRMLPGADGLAILTAMRTVGIDT--PVLMLSALGDVDERIRGLRAGGDDYL 99

Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERR 155
            KP    E+ AR+  + RR + S    +T    G + +    R      +  PL   E R
Sbjct: 100 TKPFDSGELSARIEVLLRRRQASGVPQQTLLKVGALELDLISRCARRGADEIPLLPTEFR 159

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSK 213
           +LE++M N G+ + +T +F A++G  FD     N+++ H+ +LRKK+ +  G +P + + 
Sbjct: 160 VLEFMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIDVHMGRLRKKI-DPPGANPMIQTV 216

Query: 214 RFLGYSI 220
           R  GY +
Sbjct: 217 RGSGYML 223


>gi|253699586|ref|YP_003020775.1| transcriptional regulator [Geobacter sp. M21]
 gi|251774436|gb|ACT17017.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 223

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   LE+ + IR  S++P+I I+        L   + G DD + KP   RE++ARV  + 
Sbjct: 58  GRDGLEICKEIRTFSRLPIIMITARVEEIDRLLGLELGADDYICKPFSPREVVARVKTVL 117

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR       A+T  + + +D       G    L   E ++L +L  N G+  +++Q+   
Sbjct: 118 RRTG-EQAPAQTHGLTLDADRYLARFHGHDLELTVVEFKLLHFLYQNPGRIYSRSQLMDR 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           IY      V +  ++SHI KLRKK+
Sbjct: 177 IYS-DQRIVSDRTIDSHIKKLRKKI 200


>gi|154483403|ref|ZP_02025851.1| hypothetical protein EUBVEN_01106 [Eubacterium ventriosum ATCC
           27560]
 gi|149735655|gb|EDM51541.1| hypothetical protein EUBVEN_01106 [Eubacterium ventriosum ATCC
           27560]
          Length = 222

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 111/231 (48%), Gaps = 22/231 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  L++D + +++  I      G+  +GF   +  E+ ++   E+ S +   ++   E  
Sbjct: 1   MIYLVEDDSSIRELVIYALNSTGLEAKGFE--KPSEFWKAVEEEEPSLVILDVMLPEESG 58

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ + IR++    ++P+I  +   S    ++  +SG DD ++KP    E++ARV A+ R
Sbjct: 59  IDVLKKIRSNPAIEKLPVIMETAKTSEYDRINGLESGADDYISKPFSMMEMVARVKALIR 118

Query: 118 RLKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R +  +       N     PI+      D EV      L  +E  +L  L+ NRG  +++
Sbjct: 119 RSEYKHEEKDYTINNLYVCPIKHLVKVDDREV-----VLTLKEYEMLCLLLKNRGIVLSR 173

Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+ + I+G  FD   E   V+ H+  LR+KL      D + + R +GY I
Sbjct: 174 EQLLNKIWGYSFDG--ESRTVDVHVRTLRQKLGT--AGDVIKTIRGVGYKI 220


>gi|49081852|gb|AAT50326.1| PA5360 [synthetic construct]
          Length = 230

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G+  LE E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++       +P+I ++        +     G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLGVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR    ++ A   PI V     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRTGPGDSEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|16126989|ref|NP_421553.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221235781|ref|YP_002518218.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13424351|gb|AAK24721.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220964954|gb|ACL96310.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 223

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 11/170 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  V+E  R  R   Q P++ +S    +   +    +G DD + KP    E++ARV A+ 
Sbjct: 59  GVTVVETLR--REGDQTPVLFLSALGEVNDRVVGLKAGADDYLVKPYAFPELMARVEALS 116

Query: 117 RRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR +        + G + +    R    QG+   L  RE ++LE++M + G+ V +T + 
Sbjct: 117 RRRETGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLL 176

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
             ++   FD   + NV++ HIS+LR K+    GFD   + + R  GY +D
Sbjct: 177 EKVWEYHFDP--QTNVIDVHISRLRSKIDK--GFDRAMLQTVRGAGYRLD 222


>gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 234

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 22  LEKEGFEIVMAHDG-----------DEAIEKATEEQPDMVLLDIMLPGKDGLEVCREIRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 71  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 130

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI +  +      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 131 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|225388704|ref|ZP_03758428.1| hypothetical protein CLOSTASPAR_02440 [Clostridium asparagiforme
           DSM 15981]
 gi|225045216|gb|EEG55462.1| hypothetical protein CLOSTASPAR_02440 [Clostridium asparagiforme
           DSM 15981]
          Length = 226

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 3/138 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R     P+I  +    +   +D  D+G DD + KP    E+LAR+ A+ RR    +  AE
Sbjct: 68  RKQIATPVIITTALDGVNDRIDGLDAGADDYLVKPYAVGELLARIRAVTRRPGNFHAGAE 127

Query: 128 T--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                IR+ +D R+    G    L +RE  ++EYL+   G+ + +  I + I+G+ D  V
Sbjct: 128 KCFADIRLDADRRELSGPGGTVRLSKRETALMEYLIRGAGQILPREIILTYIWGV-DAEV 186

Query: 186 EENVVESHISKLRKKLRN 203
           E+  ++++I  LR++LR+
Sbjct: 187 EDGNLDNYIYFLRRRLRS 204


>gi|224827129|ref|ZP_03700225.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224600638|gb|EEG06825.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 228

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L++ R +RA S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 59  LMLPGRDGLDICRELRAFSDVPIVMVTARVEEIDRLLGLELGADDYICKPYSPREVVARV 118

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            AI RR +          + +  +G     QG    L   E R+L  L +  G+  ++ Q
Sbjct: 119 KAILRRSQRHGALPADAGLTIDEEGYQASWQGRRLELTPAEFRLLRTLASAPGRVFSRDQ 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   +Y      V +  V+SHI  LR+KL
Sbjct: 179 LLDHLYA-DHRVVTDRTVDSHIKNLRRKL 206


>gi|154483735|ref|ZP_02026183.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC
           27560]
 gi|149735226|gb|EDM51112.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC
           27560]
          Length = 225

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 12/173 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L + + IR H   P++ ++        +  F +G DD + KP    E+ AR+AA  
Sbjct: 58  GMDGLTVCQQIREHIACPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHL 117

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR      R     +R F +       R   +  +  PL +RE  I+E L  N G+   +
Sbjct: 118 RR---EQRRQNNSAVRFFGELILDYSARTVTINNQNIPLSKREFEIVELLSLNAGQVFDR 174

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +I+  ++GL  +   + ++E HI K+R K       + +++    GY   WN
Sbjct: 175 ERIYELVWGLDGDGNSDTIME-HIRKIRAKFAAHTLHNYIETVWGCGYR--WN 224


>gi|78485313|ref|YP_391238.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78363599|gb|ABB41564.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 226

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 4/169 (2%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           W+Q+    D+  ++  L GK    L++ + +R  SQVP+I ++        +   + G D
Sbjct: 42  WVQNHPV-DLILLDIMLPGKDG--LQVCKEVRTISQVPIIMLTAKVEEIDRILGLELGAD 98

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
           D + KP   RE++ARV A+ RR  +      T    +  +      QG+   L   E  I
Sbjct: 99  DYICKPFSPRELVARVKALLRRSSLRQENHSTEDWHMDEERYQVRYQGKTVNLSMVEFAI 158

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           L+ L  + G+  +++ +  +IY   +  V +  V+SHI KLR KL  +L
Sbjct: 159 LKLLSTSPGRIYSRSHLIGSIYP-DNRVVSDRTVDSHIKKLRHKLAEEL 206


>gi|319936036|ref|ZP_08010459.1| hypothetical protein HMPREF9488_01290 [Coprobacillus sp. 29_1]
 gi|319808986|gb|EFW05493.1| hypothetical protein HMPREF9488_01290 [Coprobacillus sp. 29_1]
          Length = 220

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 106/221 (47%), Gaps = 9/221 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           M ++++D   +++    L    G  ++    ++ E  L   +  DV  I+  L  G G  
Sbjct: 1   MILIVEDDIAIQETLKELLCMKGYQVQQAYHMK-EALLLDKSHIDVMIIDIQLPDGNG-- 57

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            + L + +R  SQ+P++ ++     QT ++  ++G DD + KP    E+LAR+  I RR+
Sbjct: 58  -ITLCQQMRQQSQIPILFLTAKDDEQTIVEALNAGGDDYITKPFRANELLARLNCIMRRI 116

Query: 120 KVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +++  +T  + +  D R   V    +   L      IL  ++ N+G  + + ++   I
Sbjct: 117 EHNHDIIQTNDLSI--DIRKYRVMKNNQEIVLSAIGYEILFLIVQNQGMVITRERMIEFI 174

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                  +E+N V  H+ +LR+KL      + +++ R +GY
Sbjct: 175 EEKTGNYIEDNTVSVHMKRLREKLGQYQQQEYIETVRGIGY 215


>gi|320333134|ref|YP_004169845.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754423|gb|ADV66180.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 222

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 99/212 (46%), Gaps = 15/212 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLELPRIIR 68
           L + GY  L   DG++  G           +SARE+   +    +G  +    E+ R +R
Sbjct: 22  LEQSGYRVLSAPDGIT--GL----------TSARENNPDLVILDLGLPDFDGAEIARRLR 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S VP+I ++   ++   ++  ++G DD + KP H  E++ARV  +  R +      + 
Sbjct: 70  KTSAVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARV-KVQLRHQQHGEVIQI 128

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +    R     G    L  +E  +L +L    G+  ++ +I   ++   +     N
Sbjct: 129 GALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWN-GELPSNSN 187

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           VV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 188 VVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219


>gi|290959131|ref|YP_003490313.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648657|emb|CBG71770.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 249

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 20/207 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +   A++              ++   + +  L R+ R    VP++ +
Sbjct: 41  ALRYEGWQIRSAGDGTGALQTARDFRPDAVVLDMMLPDMDGLTVLGRLRRELPDVPVLFL 100

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134
           +   +++  +    +G DD V KP    E++AR+  + RR   ++ R+++    G + + 
Sbjct: 101 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSDSVLVVGDLMLD 160

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +    G    L   E  +L +LM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 161 EDSHEVSRAGANIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 219

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           S LR+K+    G +P + ++R  GY I
Sbjct: 220 SYLRRKI--DAGREPMIHTRRGAGYLI 244


>gi|238061758|ref|ZP_04606467.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237883569|gb|EEP72397.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 231

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET-GPIRVFSDGRDPEVQGEV 146
            + G DD V KP   RE++ARV A+ RR   +     R  T GP+ +    R   V GE 
Sbjct: 99  LELGADDYVTKPFSPRELVARVRAVLRRTVGVPEGVERVRTVGPVTLDPTRRTVTVSGEP 158

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L   E  +L +LMA  G+   + ++ +A++G +        V+ H++++R KL    G
Sbjct: 159 IQLTYTEFDLLAHLMARPGRVFTRGELLAAVWG-YAAHSSTRTVDVHVAQVRAKLGGAAG 217

Query: 207 FDPVDSKRFLGYSID 221
              + + R +GY+ D
Sbjct: 218 V--IRTHRGVGYAAD 230


>gi|284032333|ref|YP_003382264.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283811626|gb|ADB33465.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 237

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 24/214 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L K GY A    DGV          E W Q   +  V  ++  L G  G +VL   R+  
Sbjct: 22  LTKAGYDARVVPDGVK-------AVEVWQQW--KPSVVVLDVMLPGLSGLEVLR--RLRS 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVS 122
           A     +I +S     +  L   + G DD V KP   RE++ RV A+ RR      L ++
Sbjct: 71  ADDGAAVIMLSARGEEEDRLVGLEVGADDYVVKPFSPRELVLRVQALLRREERLAGLDLT 130

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             +   GP+ + +  R   + G    L  RE  +L +L+A+ GK   K ++   ++G +D
Sbjct: 131 PTKLHAGPVVIDTAARTATLDGAELSLTHREFDLLAFLVAHAGKAYTKVELLRRVWG-WD 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
              + + V  H+ +LR+K+      DP D K  L
Sbjct: 190 FG-DSSTVIVHVRRLREKIEA----DPSDPKLVL 218


>gi|254479525|ref|ZP_05092845.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034545|gb|EEB75299.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 223

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 3/144 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S+VP++ I+        L  F+ G DD V KP   RE++ARV AI  R   S
Sbjct: 64  LLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYGS 123

Query: 123 NNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +T    +  D   R+  V G+   L  +E  +L+ L+ N+GK V++ +  + ++G 
Sbjct: 124 QEDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
           +D   +   V++HI +LR+KL  K
Sbjct: 183 YDFYGDLRTVDTHIKQLREKLGEK 206


>gi|171780129|ref|ZP_02921033.1| hypothetical protein STRINF_01917 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281477|gb|EDT46912.1| hypothetical protein STRINF_01917 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 230

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 10/204 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   ++D   +   D G+ +E F +   ++ L     E+   +   ++  G   + +  
Sbjct: 8   DDEKNIRDLIASFLRDQGLEVEVFET--GDQLLLRFMEEEADVVVLDVMMPGTSGINIAA 65

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-- 123
           ++R  S+VP+I ++   S    +  F +GVDD   KP    ++  RV AI  R  V+   
Sbjct: 66  MLRKRSEVPIILLTARDSDDDFVKGFSAGVDDYFTKPFSPLKLSLRVRAILARQPVAKEA 125

Query: 124 NRAETGPIRV----FSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              E  P+       SD  R    QG+   L   E  +L+ L+++  + +++  + S ++
Sbjct: 126 TNEEAKPLAYEGLELSDKDRSATYQGKHIKLTNTEFELLKVLLSHSEEAISRDDLLSQVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLR 202
           G ++  VE  V +  I +LRKKLR
Sbjct: 186 G-YESDVETRVTDDTIKRLRKKLR 208


>gi|158425656|ref|YP_001526948.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
 gi|158332545|dbj|BAF90030.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
          Length = 233

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +    +G DD V KP    E+LARV A+ R
Sbjct: 62  IELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLR 121

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K  +       G I +  +       G    L   E R+LE+LM + G+  ++ Q+  
Sbjct: 122 RAKPEHVATLLRAGDIELDRETHRVHRSGREVHLGPTEFRLLEFLMQSPGRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS +
Sbjct: 182 GVWGQ-DVYIDERTVDVHVGRLRKAINRGRQPDPIRTVRGAGYSFN 226


>gi|157693669|ref|YP_001488131.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682427|gb|ABV63571.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 231

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 7/150 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  + +RA S VP++ ++   S     +   +G DD + KP    E+ ARV A  RR  
Sbjct: 61  IETCQQMRASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYT 120

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           V   + E        G +RV  +  +   + +   L   E R+L+ LM+ R K  +   I
Sbjct: 121 VYQEKKEQEETFLVGGKLRVSEEFNEVWKENQQIKLSDLEYRMLKLLMSRRNKIFSAQNI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + +++G        N V  HI KLR K+ +
Sbjct: 181 YESVWGQPYFYCSNNTVMVHIRKLRAKIED 210


>gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 232

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 3/153 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAET 128
           + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ RR++  ++  R   
Sbjct: 76  ANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVRPALAGERLSY 135

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             I + +        G    L   E R+L++ + + G+  ++ ++  +++G  D  +E  
Sbjct: 136 ADIEMDTASHRVRRGGSPISLGPTEFRLLKHFLEHPGRVFSRERLLDSVWG-RDSDIEPR 194

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            V+ HI +LRK +      D + + R  GY++D
Sbjct: 195 TVDVHIRRLRKAINLADAPDLIRTVRSAGYALD 227


>gi|146311154|ref|YP_001176228.1| two component transcriptional regulator [Enterobacter sp. 638]
 gi|145318030|gb|ABP60177.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 263

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 13/167 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++        L     G DD V KP +  E++ARV A+ RR + +   A
Sbjct: 99  IRKESNVPVIMVTALDQDVDKLMGLRLGADDYVIKPFNPSEVIARVEAVLRRTRPNAEVA 158

Query: 127 ETGPIRVFSDGRDPE-------VQG-EVFP-LPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + P+R       PE       V G EV P L   E ++L +L  N  K  ++ ++  A 
Sbjct: 159 NSRPLRTSFLTIYPEDFYVEITVAGEEVTPVLTTTEFKLLTHLARNPRKVCSREELLDAC 218

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSIDWN 223
               D    +  V+SH+SKLRKKL N  G   V +S R LGY +  N
Sbjct: 219 LPEGDSL--DRTVDSHMSKLRKKLENA-GLKGVPESIRGLGYRLGEN 262


>gi|322392284|ref|ZP_08065745.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321144819|gb|EFX40219.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 225

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D  V+G+   L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYAGVILNTKSMDLHVEGQAITLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  R  +GF  +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEERGLVGF--IETKKGIGYGL 222


>gi|301310542|ref|ZP_07216481.1| response regulator DrrA [Bacteroides sp. 20_3]
 gi|300832116|gb|EFK62747.1| response regulator DrrA [Bacteroides sp. 20_3]
          Length = 228

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 11/149 (7%)

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ RI+R     +  P+I ++   +    L  F+ G DD ++KP   R+++ARV A+ RR
Sbjct: 63  KMARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLRR 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +   E   +   +   D +     V G   PL ++E  IL+ L+ N+G   ++ +I
Sbjct: 123 TSEKSKDKEIEKLEYETLALDTKRIKATVDGVEVPLTKKEFEILKLLLENKGNVFSREEI 182

Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKL 201
            S I+   DE  V +  ++ +I++LRKK+
Sbjct: 183 LSRIWK--DEVYVLDRTIDVNITRLRKKI 209


>gi|296178443|dbj|BAJ07866.1| putative repressor-response regulator [Streptomyces sp. 2238-SVT4]
          Length = 240

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 6/143 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    PLI ++   S    +    +G DD + KP   RE++AR+ A+ RR+  
Sbjct: 82  EVCRSIRAVCDTPLIVVTGRESELDRVLGLQAGADDYLVKPYGFRELMARIEAVMRRITP 141

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N  A+    G +R+    R   + G+   L  +E ++L  L +  G  + + QI   I+
Sbjct: 142 RNTSADVVAHGRLRIDITSRQVTLDGKDVQLTPKEFQLLHLLASQPGSVIPRQQIMVRIW 201

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G    +     +++H+S LR KL
Sbjct: 202 G---GSWSVRTLDTHVSSLRSKL 221


>gi|294789087|ref|ZP_06754326.1| QseB [Simonsiella muelleri ATCC 29453]
 gi|294482828|gb|EFG30516.1| QseB [Simonsiella muelleri ATCC 29453]
          Length = 221

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 35/234 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQS---------SAREDVSAIEA 51
            ++I+D  L+ DG             G + L F  +W Q+         SA  D   ++ 
Sbjct: 3   ILIIEDDPLIGDGL----------YHGLSKLSFTADWFQNGKLGADALNSASYDAVVLDL 52

Query: 52  FLI-GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
            L    G  +L+  R  + +  +P++ ++   +L   L   +SG DD + KP    E+ A
Sbjct: 53  GLPDCDGMVILQTWR--QTNHDIPVLILTARDALPDRLAGLNSGADDYLCKPFALDEVAA 110

Query: 111 RVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           R+ A+ RR   S  RA      G + + +  +   ++G+  PL R E  +LE L+     
Sbjct: 111 RLVALIRR---SKGRAAADIRCGALTLDTAAKTATLRGQSLPLTRHEYMLLEMLLLQPNF 167

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++ QI   +YG +++ +E N +E H+  LRK    K+G D + + R LGY I
Sbjct: 168 IHSRAQIEDKLYG-WEQEIESNAIEVHVYNLRK----KIGKDFIRNHRNLGYQI 216


>gi|256392721|ref|YP_003114285.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256358947|gb|ACU72444.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 268

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 6/145 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IRA S V +I +S+       +    +G DD + KP   RE++AR+ A+ RR++
Sbjct: 105 LEICRGIRAVSDVAIITVSERAEEIDCVLGLQAGSDDYLVKPYGFRELMARIDAVMRRIR 164

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V +     G + + +  R+  + G+V  + R+E  +L  L +  G  +++ QI S I
Sbjct: 165 PGAVRDRVIAHGRLLIDAGCREVRIGGQVVGVTRKEFDLLLLLASQPGTVISRQQIMSQI 224

Query: 178 Y-GLFDEAVEENVVESHISKLRKKL 201
           +  ++ E+     +++H+S LR KL
Sbjct: 225 WQDVWSEST--RTIDTHVSSLRSKL 247


>gi|163940441|ref|YP_001645325.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229011915|ref|ZP_04169095.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
 gi|229133482|ref|ZP_04262309.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|163862638|gb|ABY43697.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228649882|gb|EEL05890.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|228749329|gb|EEL99174.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
          Length = 224

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 9/187 (4%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+++  ++   I   L+  G   LE+ R +RA    P+I ++   S+   +   DSG DD
Sbjct: 38  LEAALEKNYDLILLDLMLPGLNGLEVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPR 151
            + KP    E+LAR+  I+RR    N   +      F D       R      E   L  
Sbjct: 98  YLPKPFAIEELLARMRVIFRR--EENTEQKHASFLSFKDLQLQIESRTITKGNEEIELTN 155

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           +E  +L   M N  + + +  +   ++G +D  VE N+V+ ++  LR KL +    + + 
Sbjct: 156 KEFELLLMFMKNINRVLTRDILLDQVWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQ 214

Query: 212 SKRFLGY 218
           + R  GY
Sbjct: 215 TVRGAGY 221


>gi|148545543|ref|YP_001265645.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148509601|gb|ABQ76461.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 239

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 12/210 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       D G S+    + + ++     AR  V  +   L+  GE  L
Sbjct: 5   LLVVDDDDEIRELLCDYLTDAGYSV--LAAADGQQMRDQLARHKVELVVLDLMLPGEDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R ++A   + +I +S   S    +   + G DD + KP   RE++AR+ A+ RR + 
Sbjct: 63  SLCRQLQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQR 122

Query: 122 SNNRAETGPI--RVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               AE   +  ++F+  R   V+       GE   LPR + R+L  L+    + V++ Q
Sbjct: 123 LGTSAEEPMVDAQLFAGFRLEHVKRLLTRPDGETLTLPRSDYRVLRELLEANNRVVSRDQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +  + +G  D   ++  V+  +S+LR++LR
Sbjct: 183 LTRSAFG-RDHLPDDRSVDMCVSRLRQQLR 211


>gi|127513623|ref|YP_001094820.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126638918|gb|ABO24561.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 226

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 2/148 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132
           P++ ++   + Q  ++  D+G DD + KP H  E++AR+ A+ RR    S+   + GP  
Sbjct: 74  PILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAAGKSSPVIQNGPYS 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           + +   + +   +   L   E ++ EY M + G+  +K+ +   IY   D  ++ NV+E 
Sbjct: 134 LNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYDQ-DFDLDSNVIEV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I +LRKKL     +  +++ R  GY +
Sbjct: 193 FIRRLRKKLDPNGQYGLIETLRGQGYRL 220


>gi|306833967|ref|ZP_07467091.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304423968|gb|EFM27110.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 236

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 ------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                        SN+    G +++  D    + +GE   L  RE  +L +L  + G+ +
Sbjct: 121 NIETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 TREYLLETVWG-YDYFGDVRTVDVTIRRLREKIED 214


>gi|258654528|ref|YP_003203684.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258557753|gb|ACV80695.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 230

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 11/169 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +V++  R     S V  +   D P+ +  +    +G DD V KP    E+ ARVAA+ 
Sbjct: 63  GLEVMKRVRAAGVDSGVVFLSARDTPADK--IAGLTAGGDDYVTKPFGLEELAARVAAVL 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR+K   + A+ G +RV     DPE       G    L   E ++L +LM N    +++ 
Sbjct: 121 RRVK--PDPADDGTLRVADLELDPETYQVTRAGVPIELAPTEYKLLRHLMVNANVVLSRQ 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+  A++G  D   +++VV ++IS LR+K+ +  G   + + R  GY +
Sbjct: 179 QLLDAVWGT-DFYGDDSVVATYISYLRRKV-DATGEPLIHTHRGFGYVL 225


>gi|256379472|ref|YP_003103132.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255923775|gb|ACU39286.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 223

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 18/230 (7%)

Query: 1   MFVLI--DDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFL 53
           M VL+  DDR LV  G +A     G+  EGF     +  E   W  S    DV  ++  L
Sbjct: 1   MRVLLVDDDRRLV--GLLA----RGLVAEGFAVDVEHDGEAGLWRASEHAYDVVVLDIML 54

Query: 54  IG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
            G  G +V    R+  A  + P++ ++         +  D+G DD + KP  +  ++AR+
Sbjct: 55  PGLNGYRVC--ARLRDAGVETPILMLTAKDGELDEAEGLDTGADDYLTKPFSYVVLVARL 112

Query: 113 AAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A+ RR       A   G + V    R    +G    L  +E  +LE+L   +G+ V K 
Sbjct: 113 RALARRGAAGRPAAVVAGDLVVDPATRACSRRGTPISLTAKEFAVLEHLARRKGRVVTKD 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + ++    EA + N+VE ++S LR+K+    G   + + R +GY ++
Sbjct: 173 EVLAGVWDSAREA-DHNLVEVYVSALRRKIDLPFGTFTITTVRGVGYRLE 221


>gi|197105292|ref|YP_002130669.1| response regulator [Phenylobacterium zucineum HLK1]
 gi|196478712|gb|ACG78240.1| response regulator [Phenylobacterium zucineum HLK1]
          Length = 251

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 12/168 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA   +P++ +S        +   + G DD V KP   RE+ ARV AI RR++
Sbjct: 80  LEVCRRLRAQGDLPILFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVTARVQAILRRVR 139

Query: 121 VSNNRAETGPIRVFSDGR---DPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQ 172
               RAE     V   GR   DPE     +     PL   E +IL  LM    +  ++  
Sbjct: 140 ---GRAEPRGPGVLRHGRLSLDPEAWTARWDEVEAPLTVTEFQILRVLMGAPARVFSRDA 196

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G    A+ +  ++SHI  LR K     G D V+++  +GY +
Sbjct: 197 IIDRLHGP-GFAITDRTIDSHIRNLRAKFARAGGHDVVETRAGVGYRL 243


>gi|58337790|ref|YP_194375.1| two-component system regulator [Lactobacillus acidophilus NCFM]
 gi|227904440|ref|ZP_04022245.1| two-component system regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58255107|gb|AAV43344.1| two-component system regulator [Lactobacillus acidophilus NCFM]
 gi|227867815|gb|EEJ75236.1| two-component system regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 238

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 12/152 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+K
Sbjct: 61  LEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVK 120

Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQ----------GEVFPLPRRERRILEYLMANRGKRVA 169
           +  + ++ T   +     +D  ++          G+   L +RE  +L  L+ N+   V+
Sbjct: 121 IEKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVS 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 181 RDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211


>gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 248

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R  +  VP++ ++   +++  +    +G DD V KP    E++ARV A+ RR 
Sbjct: 82  LEVLRRMRTDNPNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALMRRT 141

Query: 120 KV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +    S++    G + +  D  +    GE   L   E  +L YLM N  + ++K QI  
Sbjct: 142 TMSVSSSDSVLVVGDLTLDEDSHEVYRAGEEIHLTATEFELLRYLMRNPRRVLSKAQILD 201

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            ++  +D   + NVVE +IS LRKK+    G DP + + R  GY +
Sbjct: 202 RVWN-YDFGGQANVVELYISYLRKKV--DAGRDPMIHTMRGAGYVL 244


>gi|296332737|ref|ZP_06875197.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673082|ref|YP_003864754.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150017|gb|EFG90906.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411326|gb|ADM36445.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 227

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 19/200 (9%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           K+G+ A F  DG  LEG+     E W       D+  ++  L       + + R IR  S
Sbjct: 22  KEGFEAEFVHDG--LEGYQRFTEENW-------DLIILDIML--PSMDGVTICRKIRETS 70

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNR 125
            VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR +      +  + 
Sbjct: 71  TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYQATGKAVIDEDM 130

Query: 126 AETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            E+    +    R+  + GE V  L  +E  +L YL+ N  +  ++ Q+   ++G +   
Sbjct: 131 IESECFTINKKTREVFLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLLEQVWG-YQFY 189

Query: 185 VEENVVESHISKLRKKLRNK 204
            +E  V+ HI +LRKKL ++
Sbjct: 190 GDERTVDVHIKRLRKKLASE 209


>gi|298503375|ref|YP_003725315.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|298238970|gb|ADI70101.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
          Length = 238

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 80  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 139

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 140 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 198

Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +  +GF  +++K+ +GY +
Sbjct: 199 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 235


>gi|284037506|ref|YP_003387436.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816799|gb|ADB38637.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 224

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 17/165 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+PR     S + L  +   P  ++    F +G DD + KP   RE++ R+ A+ RR   
Sbjct: 69  EMPR----QSVMLLTALDSLPDKESG---FGAGADDYLVKPFEFRELMLRIKALARR--N 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S+       +RV     D E       G+   L  RE  +LEYLM N+G+ V++  I   
Sbjct: 120 SDFSGLKTVLRVADLELDTEAHSVYRAGQRIDLTAREYALLEYLMVNQGRTVSRVDIAEK 179

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ L FD +   NV+E +I+ LRKK+        V +   +GY +
Sbjct: 180 VWDLHFDTST--NVIEVYINYLRKKIDKDYSQKLVHTIIGMGYVL 222


>gi|261404059|ref|YP_003240300.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261280522|gb|ACX62493.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 226

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 85/161 (52%), Gaps = 2/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR ++ +P++ ++     +  +  F+ G DD + KP    E++ RV A+ +R +V
Sbjct: 63  ELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQV 122

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++  T G +++     + +   EVF LP +E  +L  L +  G  + + ++   I+G 
Sbjct: 123 AASQTVTIGNLQMNRKTYEAKAGDEVFTLPLKEFELLFKLASYPGSTLTRDRLIEDIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D    E  ++ H+++LR++   +     + + R LGY ++
Sbjct: 182 YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLE 222


>gi|146284354|ref|YP_001174507.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri
           A1501]
 gi|145572559|gb|ABP81665.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri
           A1501]
          Length = 271

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 8/152 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P++ ++    +   +   + G DD + KP    E+ ARV A+ RR      R +   + 
Sbjct: 121 LPVLMLTARGEVSDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVGGGERQQRCGVL 180

Query: 133 VFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           V+  D R   +  E   L  RE+ +LE L+A  G+ ++K Q+ + ++GL DE    + +E
Sbjct: 181 VYDLDARRFSLADEPLTLTSREQSVLEALIARPGRVMSKDQLAAQVFGL-DEDASADAIE 239

Query: 192 SHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
            ++ +LRKKL  +    PV   + R LGY ++
Sbjct: 240 IYVYRLRKKLEGQ----PVRIVTFRGLGYMLE 267


>gi|15608043|ref|NP_215418.1| two component response transcriptional regulatory protein PRRA
           [Mycobacterium tuberculosis H37Rv]
 gi|15840322|ref|NP_335359.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|31792091|ref|NP_854584.1| two component response transcriptional regulatory protein PRRA
           [Mycobacterium bovis AF2122/97]
 gi|121636826|ref|YP_977049.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660681|ref|YP_001282204.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium tuberculosis H37Ra]
 gi|148822112|ref|YP_001286866.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis F11]
 gi|215402702|ref|ZP_03414883.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis 02_1987]
 gi|215410489|ref|ZP_03419297.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis 94_M4241A]
 gi|215426171|ref|ZP_03424090.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T92]
 gi|215429761|ref|ZP_03427680.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis EAS054]
 gi|215445046|ref|ZP_03431798.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T85]
 gi|218752567|ref|ZP_03531363.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis GM 1503]
 gi|224989297|ref|YP_002643984.1| two component response transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800073|ref|YP_003033074.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254231209|ref|ZP_04924536.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis C]
 gi|254363833|ref|ZP_04979879.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549881|ref|ZP_05140328.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185800|ref|ZP_05763274.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199923|ref|ZP_05767414.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T46]
 gi|260204107|ref|ZP_05771598.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis K85]
 gi|289442314|ref|ZP_06432058.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T46]
 gi|289446470|ref|ZP_06436214.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555315|ref|ZP_06444525.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289573530|ref|ZP_06453757.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis K85]
 gi|289744634|ref|ZP_06504012.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 02_1987]
 gi|289749425|ref|ZP_06508803.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T92]
 gi|289752958|ref|ZP_06512336.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis EAS054]
 gi|289756989|ref|ZP_06516367.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T85]
 gi|289761037|ref|ZP_06520415.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis GM 1503]
 gi|294996384|ref|ZP_06802075.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis 210]
 gi|297633422|ref|ZP_06951202.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730407|ref|ZP_06959525.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN R506]
 gi|298524395|ref|ZP_07011804.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306775029|ref|ZP_07413366.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu001]
 gi|306782056|ref|ZP_07420393.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu002]
 gi|306783577|ref|ZP_07421899.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu003]
 gi|306787941|ref|ZP_07426263.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu004]
 gi|306792278|ref|ZP_07430580.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu005]
 gi|306796677|ref|ZP_07434979.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu006]
 gi|306802565|ref|ZP_07439233.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu008]
 gi|306806745|ref|ZP_07443413.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu007]
 gi|306966942|ref|ZP_07479603.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu009]
 gi|306971137|ref|ZP_07483798.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu010]
 gi|307078865|ref|ZP_07488035.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu011]
 gi|307083424|ref|ZP_07492537.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu012]
 gi|313657734|ref|ZP_07814614.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN V2475]
 gi|1314043|emb|CAA97378.1| TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA
           [Mycobacterium tuberculosis H37Rv]
 gi|13880485|gb|AAK45173.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|31617679|emb|CAD93788.1| TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA
           [Mycobacterium bovis AF2122/97]
 gi|121492473|emb|CAL70941.1| Two component response transcriptional regulatory protein prrA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600268|gb|EAY59278.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis C]
 gi|134149347|gb|EBA41392.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504833|gb|ABQ72642.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium tuberculosis H37Ra]
 gi|148720639|gb|ABR05264.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis F11]
 gi|224772410|dbj|BAH25216.1| two component response transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321576|gb|ACT26179.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415233|gb|EFD12473.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T46]
 gi|289419428|gb|EFD16629.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289439947|gb|EFD22440.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289537961|gb|EFD42539.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis K85]
 gi|289685162|gb|EFD52650.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 02_1987]
 gi|289690012|gb|EFD57441.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T92]
 gi|289693545|gb|EFD60974.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis EAS054]
 gi|289708543|gb|EFD72559.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis GM 1503]
 gi|289712553|gb|EFD76565.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T85]
 gi|298494189|gb|EFI29483.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308216381|gb|EFO75780.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325287|gb|EFP14138.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331580|gb|EFP20431.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335393|gb|EFP24244.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308339198|gb|EFP28049.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308342935|gb|EFP31786.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308346761|gb|EFP35612.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308350676|gb|EFP39527.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355337|gb|EFP44188.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359275|gb|EFP48126.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363185|gb|EFP52036.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308366841|gb|EFP55692.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu012]
 gi|323720612|gb|EGB29690.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904877|gb|EGE51810.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis W-148]
 gi|328459812|gb|AEB05235.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 236

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 5/152 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET- 128
           + VP+  +S   S+   +   ++G DD + KP    E++ARV A+ RR    + + +ET 
Sbjct: 81  NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETI 140

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             GP+ V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A +
Sbjct: 141 TVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAAD 199

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            NVV+  I  LR+KL    G   + + R +G+
Sbjct: 200 TNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGF 231


>gi|313897315|ref|ZP_07830858.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium sp. HGF2]
 gi|312957685|gb|EFR39310.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium sp. HGF2]
          Length = 226

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 2/112 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F+ GVDD + KP   RE+LARV A + R+ +    R   G + +    R+  +   +  L
Sbjct: 92  FEQGVDDYITKPFSPRELLARVNAHLKRQNRKQEKRLSVGDLSMDMKRREAYIGERMMTL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++E  +LEY + N+   +++  I + I+G FD   +  +V+ H+ KLR KL
Sbjct: 152 TKKEFDLLEYFIQNKDIVLSRDSILNDIWG-FDYDGDTRIVDVHVFKLRNKL 202


>gi|299769361|ref|YP_003731387.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
 gi|298699449|gb|ADI90014.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
          Length = 220

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GEKVL   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  
Sbjct: 59  GEKVLTTIRY--KQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116

Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R+  +S     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  
Sbjct: 117 RKQTLSQQSILTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A+Y  + E +E N +E  I +LRK    K+G   + + R LGY +
Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSCIKTIRGLGYRM 216


>gi|262043157|ref|ZP_06016295.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039545|gb|EEW40678.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 240

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E  L L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ 
Sbjct: 74  EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALL 133

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   +++      P +V    R+  V  +   L   E  I+E L+ NRGK V+K  +  
Sbjct: 134 RRNSGLASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLML 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y    E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 194 QLYP-DAELRESHTIDVLMGRLRKKIQAEYPQDVITTVRGQGY 235


>gi|47231509|gb|AAT12781.1| PhoB [Alcaligenes faecalis]
          Length = 236

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETG 129
            +P+I ++   S Q  +D  ++G DD + KP   +E++AR+ A+ RR   +++++    G
Sbjct: 76  HIPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELIARIKAVLRRRAPQLTDDVISIG 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEEN 188
            +++         QG    +   E R+L + M +  +   ++Q+   ++G  D   VEE 
Sbjct: 136 NLQLDPSTHRLSSQGMALTIGPTEFRLLHFFMTHTERVFTRSQLLDQVWG--DHVFVEER 193

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            V+ HI +LRK L        +++ R  GY
Sbjct: 194 TVDVHIRRLRKALEPSGHDKHIETIRGSGY 223


>gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 248

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  + +
Sbjct: 67  RRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPTVS 126

Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            AET            G + V ++ R     GE   L   E  +LE L    GK V + +
Sbjct: 127 VAETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVPRAE 186

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201
           I   ++G     A +  VV+ ++++LR KL
Sbjct: 187 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 216


>gi|317055523|ref|YP_004103990.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447792|gb|ADU21356.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 219

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 29/222 (13%)

Query: 7   DRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLEL 63
           + AL K+GY       GVS    G  +L     L    + D+  ++  L G  GE++L  
Sbjct: 18  EEALRKEGY-------GVSRAYSGTEAL----LLVGQKKPDLILLDLMLPGLSGEELL-- 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           P+I      +P+I +S    +   +    +G  D V KP +  E++AR+A    +L+++ 
Sbjct: 65  PKI----KGIPVIVVSAKADVADKVGLLMAGASDYVTKPFNIAELIARIAV---QLRMAQ 117

Query: 124 NRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++ +T     G + ++ D     + GE   L R E  IL+ LM +    V +T I   I 
Sbjct: 118 SKGDTNALTFGDLTLYCDTLTAVIDGEEIRLTRTECAILKLLMQSPNTPVGRTTILDKI- 176

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      E  ++ HIS +RKKL    G D +++   +G+ +
Sbjct: 177 SIDTPDCTERSLKQHISNMRKKLEAVNGHDYIEAVYGIGFKM 218


>gi|254559323|ref|YP_003066418.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens DM4]
 gi|254266601|emb|CAX22371.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens DM4]
          Length = 220

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 17/225 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D  ++ DG  A  G  G ++E   +  + +  L +S    V        G G  V
Sbjct: 3   ILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALATSGFAAVVLDLMLPDGSGLDV 62

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +R    + P++ ++   ++   +   D G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---RGLRGRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRR- 118

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++ RA    E   IR+        + G   P+ RRE  +L  LM       +K ++  
Sbjct: 119 --ASGRAAACLEHAGIRLDPAELAVTLHGRPIPVSRREFMVLAALMERPSVLRSKGELEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E VE N VE H+      LR K+G   +++ R LGY +
Sbjct: 177 RLYG-WQEEVESNAVEVHV----HNLRAKIGKHTIETVRGLGYRM 216


>gi|229173313|ref|ZP_04300857.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
 gi|228610007|gb|EEK67285.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
          Length = 224

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 5/162 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR +
Sbjct: 61  LEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREE 120

Query: 121 VSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              N+  +      +++  + R      E   L  +E  +L   M N  + + +  +   
Sbjct: 121 HIENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G +D  VE N+V+ ++  LR KL +    + + + R  GY
Sbjct: 181 VWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221


>gi|227892817|ref|ZP_04010622.1| two-component system regulator [Lactobacillus ultunensis DSM 16047]
 gi|227865458|gb|EEJ72879.1| two-component system regulator [Lactobacillus ultunensis DSM 16047]
          Length = 238

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 12/152 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+K
Sbjct: 61  LEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVK 120

Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQ----------GEVFPLPRRERRILEYLMANRGKRVA 169
           +  + ++ T   +     +D  ++          G+   L +RE  +L  L+ N+   V+
Sbjct: 121 IEKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVS 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 181 RDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211


>gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 220

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LDVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQ 119

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +Y
Sbjct: 120 SGRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G + E +  N VE +I  LRK    KLG + + + R LGY I
Sbjct: 180 G-WGEEIGSNTVEVYIHALRK----KLGAELIRNVRGLGYMI 216


>gi|108801411|ref|YP_641608.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870564|ref|YP_940516.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108771830|gb|ABG10552.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696653|gb|ABL93726.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 233

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 15/190 (7%)

Query: 23  GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75
           G+ L GF+   +++  E L+S+     +  +A ++     VL+   ++ A     + VP+
Sbjct: 26  GLRLSGFDVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPI 131
             +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+   + GP+
Sbjct: 83  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSSATFSSETIQVGPL 142

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+
Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 201

Query: 192 SHISKLRKKL 201
             I  LR+KL
Sbjct: 202 VFIGYLRRKL 211


>gi|51094316|gb|AAT95326.1| response regulator [Bifidobacterium breve UCC2003]
          Length = 243

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 20/172 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +     P++ ++     Q  +     G DD V KP    E++AR+ AI RR   +  
Sbjct: 71  RIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TRE 127

Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + E  PI       +  D  D    G+   L   E + + YLM N G+ ++K QI   ++
Sbjct: 128 QVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKFVRYLMDNEGRVLSKAQILDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLR---------NKLGFDP-VDSKRFLGYSI 220
             +D   +  +VES+IS LRKK+           K    P +++KR +GY I
Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238


>gi|332187093|ref|ZP_08388833.1| response regulator [Sphingomonas sp. S17]
 gi|332012793|gb|EGI54858.1| response regulator [Sphingomonas sp. S17]
          Length = 229

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 104/227 (45%), Gaps = 26/227 (11%)

Query: 16  IALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEA---------FLIGKGEKVLE 62
           I L  DD V+ E    G  +      + S+  E ++ + A          L+ +G+ +  
Sbjct: 3   ILLAEDDAVTAENIGAGLRAAGHHIRIASTGHEALTLLNAEPFDLAVLDRLMPQGDGMGV 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I +    +P++ ++   +++  ++  + G DD + KP    E+ AR+ A+ RR  V+
Sbjct: 63  LAAIRQRDRHLPVLMLTALGAIEDRVEGLEEGADDYLVKPFALPELTARINALGRRRAVA 122

Query: 123 NNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               E GP  +   G        R       V  +  RE R+LE L+  +G+ V +T + 
Sbjct: 123 KE--EDGPEVILRWGGLTLDLLDRQVRWHEAVILVQPREFRLLEELLRAQGRIVTRTMLL 180

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++ L FD     N+VE+H+S+LR +L      D + + R  GY +
Sbjct: 181 ESVWKLHFDP--RTNIVETHLSRLRTRLAEAGCADAIVTVRGAGYRM 225


>gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R   + P+I ++   S+   +   D G DD + KP    E+LAR+ ++ RR+ 
Sbjct: 61  LEVARRLRETKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIA 120

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    ++          +R+  + R      ++  L +RE  +L  L+ N     ++ Q+
Sbjct: 121 IETESSDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G FD  VE NVV+ +I  LR K+
Sbjct: 181 LKEVWG-FDSEVETNVVDVYIRYLRNKI 207


>gi|326324767|dbj|BAJ84573.1| TCS response regulator CovR-like protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + + +T    V+ D       R      +   L +RE  +L  LM N  + + + ++ S
Sbjct: 123 ESEK-KTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLS 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 182 NVWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|288561577|ref|YP_003428983.1| two component response regulator [Bacillus pseudofirmus OF4]
 gi|288548209|gb|ADC52091.1| two component response regulator [Bacillus pseudofirmus OF4]
          Length = 232

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 11/148 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R +S +P++ +S   +L+  +D  + G DD + KP    E++ARV A+ RR  V
Sbjct: 67  EVCKIVREYSTIPILMLSARKALEDRVDGLNLGADDYLTKPFEPEELIARVKALLRR--V 124

Query: 122 SNNRAETGPIRV-FSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   A+   +++ F DG       R   V  E+  L  +E  +L  L  N  +   +  +
Sbjct: 125 TTIEAKKDEVKLAFEDGLSIYYENRSVYVNNELVELTAKEFELLYKLALNPQRVYTRDDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              I+G  D    +  V+SH+  +R KL
Sbjct: 185 LYLIWG-EDYVGAQRTVDSHMKNIRSKL 211


>gi|253578483|ref|ZP_04855755.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850801|gb|EES78759.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---T 128
           ++P+I ++   S   T+   DSG DD + KP    E+++R+ A+ RR    ++ AE   T
Sbjct: 73  KLPIIMLTAKSSEYDTVVGLDSGADDYIPKPFRMMELISRIRALLRR--TEDDGAEEYRT 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + V        V  +   L  +E  +L  L+ N G  +++TQ+ + ++G ++   E  
Sbjct: 131 GNLYVCPSRHIATVDKKNVNLTLKEYEVLCLLLKNSGTVLSRTQLLNQVWG-YEFDGESR 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            V+ HI  LR+KL +    + V++ R +GY I+
Sbjct: 190 TVDVHIRTLRQKLGS--AGELVETVRGVGYKIN 220


>gi|154503490|ref|ZP_02040550.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149]
 gi|153795590|gb|EDN78010.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 13/210 (6%)

Query: 17  ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPL 75
           AL   D +  + F+  E    L +  R  V  ++  L G  GE+VL+    IR     P+
Sbjct: 20  ALEKADYLCTQAFSGTE-ARMLLAMNRYSVVLLDLMLPGISGEEVLQE---IRKQGNTPV 75

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135
           I ++   ++   ++   SG DD V KP   +E+LARVA   RR++ S +        +  
Sbjct: 76  IILTAKDTIDDKVEVLQSGADDYVTKPFDIKEVLARVAVQIRRMEGSFSEGNLVYQGLEL 135

Query: 136 DGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV--EENVV 190
           D  +  V   Q E+  + R+E  ILE L+ +  K  +K +IF   +   +EA   E   +
Sbjct: 136 DRENFCVRVDQTELPKITRQEFSILELLLKHPKKVFSKEEIFEYAW---EEAYMGETKTL 192

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + HIS +RKK+++    + +++   +GY +
Sbjct: 193 DVHISNIRKKIKSVTSKEYIETIWGIGYRL 222


>gi|28868878|ref|NP_791497.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213969509|ref|ZP_03397645.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301385965|ref|ZP_07234383.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058710|ref|ZP_07250251.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|28852117|gb|AAO55192.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925605|gb|EEB59164.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
          Length = 247

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE    + R +R     P++ ++        +   D+G DD V KP+H R +LAR+
Sbjct: 59  LMLPGEDGFSICRTVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARI 118

Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR +          R   GP+ V +  R+  ++ +   L   E  +L  L+AN G+
Sbjct: 119 HALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 178

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            +++ +IF+A+ G+  +  ++  ++  IS++R     K+G DP+  +
Sbjct: 179 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 220


>gi|51597134|ref|YP_071325.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis IP 32953]
 gi|153949110|ref|YP_001400191.1| BaeR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|170023569|ref|YP_001720074.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis YPIII]
 gi|186896226|ref|YP_001873338.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590416|emb|CAH22056.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|152960605|gb|ABS48066.1| transcriptional regulatory protein BaeR [Yersinia
           pseudotuberculosis IP 31758]
 gi|169750103|gb|ACA67621.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186699252|gb|ACC89881.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
          Length = 239

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 36  EWLQSSA------REDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           +WL + A      R+   AI    L+  G   + L R IR  S +P++ ++        L
Sbjct: 39  QWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITLCREIRRFSDIPIVMVTAKTEEIDRL 98

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVF 147
              + G DD + KP   RE++ARV  I RR     ++  +  P+ +         QG + 
Sbjct: 99  LGLEIGADDYICKPYSPREVVARVKTILRRCSQQRHQPTDDAPLLINESRFQASYQGHML 158

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            L   E R+L+ L +  G   ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 159 ELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKL 211


>gi|328476337|gb|EGF46980.1| two-component response regulator [Lactobacillus rhamnosus MTCC
           5462]
          Length = 226

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 4/155 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA + VP+I ++   + Q  +    +G DD V KP    E+ AR+ A  RR    + +A
Sbjct: 69  IRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRRAHQPDKQA 128

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G I +        V      L  ++ +++E+L  N G+  ++ Q++  I+G +D 
Sbjct: 129 QIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYEKIWG-YDA 187

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             +E V+  HI ++RK         P+ +   +GY
Sbjct: 188 QGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGY 222


>gi|258507543|ref|YP_003170294.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257147470|emb|CAR86443.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|259648894|dbj|BAI41056.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 226

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 4/155 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA + VP+I ++   + Q  +    +G DD V KP    E+ AR+ A  RR    + +A
Sbjct: 69  IRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRRAHQPDKQA 128

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G I +        V      L  ++ +++E+L  N G+  ++ Q++  I+G +D 
Sbjct: 129 QIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYEKIWG-YDA 187

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             +E V+  HI ++RK         P+ +   +GY
Sbjct: 188 QGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGY 222


>gi|138895267|ref|YP_001125720.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266780|gb|ABO66975.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
          Length = 223

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 3/151 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP+I ++        +     G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  ETCKRIREFSNVPIIMVTARDQTTDIVQGLKIGADDYITKPFDESELLARIEAVLRRSVG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +++ E   +    D      Q +   L  +E  IL   + +  +  ++ QI  +++G +
Sbjct: 122 KHSKMEFQGLVWDEDEYKVHYQNKPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           +   EE  ++SH+  +R+KLR + GF P+D 
Sbjct: 181 NANTEERTIDSHVKNIREKLR-QAGF-PIDQ 209


>gi|90579472|ref|ZP_01235281.1| putative transcriptional regulatory protein PhoP [Vibrio angustum
           S14]
 gi|90439046|gb|EAS64228.1| putative transcriptional regulatory protein PhoP [Vibrio angustum
           S14]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           ++P++ ++   + Q  +   ++G DD + KP    E++AR++A+ RR           G 
Sbjct: 72  RLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSAGFVKPEMTAGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           IRV    +   V   +  L   E  +LEYLM +  + V+K ++   +Y   D+  + N +
Sbjct: 132 IRVDLLAKQVYVHETLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE--DQEGDPNTI 189

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           E  IS+LRKK       +P+ + R  GY  + N
Sbjct: 190 EVMISRLRKKFTKTGQDNPISTIRGQGYIFELN 222


>gi|148549507|ref|YP_001269609.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148513565|gb|ABQ80425.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 223

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 70/130 (53%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPI 131
           +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  +   R +  GP+
Sbjct: 73  LPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLGGERQQRCGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
               D R   +  +   L  RE+ +L+ L+A  G+ ++K Q+ + ++GL DE    + +E
Sbjct: 133 VYDLDTRRFTLGDDNLTLTSREQSVLQALIARPGRVMSKEQLAAQVFGL-DEEASPDAIE 191

Query: 192 SHISKLRKKL 201
            +I +LRKKL
Sbjct: 192 IYIHRLRKKL 201


>gi|329116733|ref|ZP_08245450.1| putative response regulator ArlR [Streptococcus parauberis NCFD
           2020]
 gi|326907138|gb|EGE54052.1| putative response regulator ArlR [Streptococcus parauberis NCFD
           2020]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 16/141 (11%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEV 142
           F+ G DD + KP +  E+  R+ A+ +R        L   N + +T    V  D ++ E+
Sbjct: 91  FELGADDYLTKPFYLEELKMRIQALLKRSGKLMDSSLYYKNLKVDTERNVVTVDEKEVEL 150

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            G+ F L       L Y + N+   + K+QIF  I+G FD     +VVE ++SK+RKKL+
Sbjct: 151 LGKEFEL-------LVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVEVYVSKIRKKLK 202

Query: 203 NKLGFDPVDSKRFLGYSIDWN 223
                  + + R +GY +  N
Sbjct: 203 GTKFVADLQTLRSVGYILKTN 223


>gi|317499278|ref|ZP_07957551.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893447|gb|EFV15656.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 222

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 103/204 (50%), Gaps = 8/204 (3%)

Query: 19  FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +G + ++L+ F+++     ++   REDV  I   +         + R IR  S+VP+I +
Sbjct: 25  YGYEIIALDRFDTV-----VEDCLREDVDLILLDINLPFYDGYYVCRTIREKSEVPIIVV 79

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSD 136
           +   S    L   + G DD V KP + + +LAR++A+ +R +    N+  +   +++  +
Sbjct: 80  TSRDSEMDELMSINLGADDFVTKPYNTQILLARISAMLKRTQKETVNDSLQYKGLKLQLN 139

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
                 +     L + E RIL  L+ ++   V++ Q+  +++   +E +++N +  +I++
Sbjct: 140 NSTVIYKDHEIELSKNEIRILYTLLQHKENIVSRDQLMESLWQ-SNEFIDDNTLTVNINR 198

Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220
           +RKKL      D + +KR  GY I
Sbjct: 199 VRKKLEAAGLKDFIKTKRGQGYMI 222


>gi|289677034|ref|ZP_06497924.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
 gi|330980158|gb|EGH78344.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 247

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 11/167 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE    + R +R     P++ ++        ++  D+G DD V KP+H R +LAR+
Sbjct: 59  LMLPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARI 118

Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR +          R   GP+ V +  R+  ++ +   L   E  +L  L+AN G+
Sbjct: 119 KALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 178

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            +++ +IF+A+ G+  +  ++  ++  IS++R     K+G DP+  +
Sbjct: 179 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 220


>gi|258538729|ref|YP_003173228.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|257150405|emb|CAR89377.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 226

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 4/155 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA + VP+I ++   + Q  +    +G DD V KP    E+ AR+ A  RR    + +A
Sbjct: 69  IRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRRAHQPDKQA 128

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G I +        V      L  ++ +++E+L  N G+  ++ Q++  I+G +D 
Sbjct: 129 QIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYEKIWG-YDA 187

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             +E V+  HI ++RK         P+ +   +GY
Sbjct: 188 QGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGY 222


>gi|182419810|ref|ZP_02951050.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237666867|ref|ZP_04526852.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376358|gb|EDT73940.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237658066|gb|EEP55621.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 231

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 14/164 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           +R  S +P+I I+   S    +     G DD + KPI   E+ ARV++  RR  + + NR
Sbjct: 66  VRESSTIPIICITAMGSDSDKVLALGIGADDYLVKPISPIELCARVSSHLRRCYRYTENR 125

Query: 126 AE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +   TG ++++SD  +     +   L  +E +IL+ L++N G+   K QI+  ++G   
Sbjct: 126 EDAYATGDLKIYSDTFEVYKGDKKIELNPKEFKILKLLISNAGRVFTKKQIYEQVWGEIY 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
                N++  H+S +R+K+ +    DP     + + R +GY I+
Sbjct: 186 IGDSNNIM-VHLSHIREKIED----DPKNPVYIKTIRGIGYKIE 224


>gi|66046945|ref|YP_236786.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257652|gb|AAY38748.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330974387|gb|EGH74453.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 247

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 11/167 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE    + R +R     P++ ++        ++  D+G DD V KP+H R +LAR+
Sbjct: 59  LMLPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARI 118

Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR +          R   GP+ V +  R+  ++ +   L   E  +L  L+AN G+
Sbjct: 119 KALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 178

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            +++ +IF+A+ G+  +  ++  ++  IS++R     K+G DP+  +
Sbjct: 179 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 220


>gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 235

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 14/207 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           +++DD   V+D         G S EGF    +    +  Q +  +    +   L+  G  
Sbjct: 19  LIVDDEPQVRD-----LLQMGFSYEGFQVFLATNGPDATQVAQEQQPDVVILDLMLPGYD 73

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+ R +R    +P+I ++    +   +   D+G DD + KP   RE++AR  A+ RR 
Sbjct: 74  GLEVTRRLRRSRDLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRRR 133

Query: 120 KVSNNRAETGPIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              NN A+    +  +  R         +      RE  +LE+ + N  + +++  I S 
Sbjct: 134 --GNNIADILTFQGITLNRGTHQVTFHDQPIDFTPREFDLLEFFLMNPRQALSRDMIMSR 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           ++G +D   ++N+VE +I  LR+KL +
Sbjct: 192 VWG-YDYMGDDNIVEVYIRHLREKLHD 217


>gi|294651309|ref|ZP_06728630.1| Kdp operon response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822781|gb|EFF81663.1| Kdp operon response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 234

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 20/149 (13%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I +S  P     +   D+G +D V KP   +E+ AR+  ++R      N+A
Sbjct: 74  LRQWSDVPVIVLSARPDENQKIKLLDAGANDYVTKPFSIQELCARMRVLFR------NKA 127

Query: 127 ETGPIR-VFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            T   + VF+DG+           V+ E   L ++E ++L  L+ ++GK V + QI + +
Sbjct: 128 PTLEQKTVFNDGKLFVDIAEHIVRVENEEIILTKKELQLLALLIRHQGKIVTQKQIMTEL 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +G+   + EE+    ++  L KKLR K+G
Sbjct: 188 WGV---SHEEDT--HYLRILVKKLRTKIG 211


>gi|226308071|ref|YP_002768031.1| two-component response regulator PrrA [Rhodococcus erythropolis
           PR4]
 gi|229488493|ref|ZP_04382359.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
 gi|226187188|dbj|BAH35292.1| two-component response regulator PrrA [Rhodococcus erythropolis
           PR4]
 gi|229323997|gb|EEN89752.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
          Length = 234

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 8/139 (5%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV------- 121
           A +++P+  +S   S+   +   +SG DD + KP    E++AR+ A+ RR          
Sbjct: 73  AGNEIPICVLSARNSVDDRIAGLESGADDYMVKPFVLAELVARIRAMLRRSNTPAGDHSE 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N    G + +   GR   V G+  PL +RE  +LE L  N G  + + ++   ++G +
Sbjct: 133 GTNTLRVGNLDIDLSGRRVRVDGKEVPLTKREFELLEVLAHNSGIVLTRERLLELVWG-Y 191

Query: 182 DEAVEENVVESHISKLRKK 200
           D   + NVV+  I  LR+K
Sbjct: 192 DFVADTNVVDVFIGYLRRK 210


>gi|255281413|ref|ZP_05345968.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
 gi|255267901|gb|EET61106.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 1/146 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I ++   S++  +  F+ G DD + KP     +   + A+ +R   
Sbjct: 66  EVLKEIRKTSNIPVIMLTARSSVEDQMSGFEKGADDYITKPYTLELVRLHIEAVLKRAGK 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  E   I V  D +    + +     R+E  +L Y + N G  +A+  I  A++G +
Sbjct: 126 LANILEYQDISVNLDAKKVYWKDKYIETTRKEYELLVYFIENSGIVLARNNILDAVWG-Y 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF 207
           D   +   V++ + +LRKKL  +  +
Sbjct: 185 DYVGDIRTVDTLVKQLRKKLTEECTY 210


>gi|254420171|ref|ZP_05033895.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196186348|gb|EDX81324.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            +SG DD + KP   RE+LAR+  A+ R L+V     + GP+    +     +      L
Sbjct: 91  LESGADDYIAKPFEPRELLARIRIALRRSLEVRRETRQFGPLLYDLESGVFFIDEAPLTL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            R E  +LE LMA  G  + +  + + +YG +D+ V  N +ES IS+LR  L  +     
Sbjct: 151 RRTEALVLEALMARPGAVIQRETLEARVYG-YDKVVNANSLESQISRLRTNLARRTDRVR 209

Query: 210 VDSKRFLGYSI 220
           + + R LGY +
Sbjct: 210 IRAVRGLGYCL 220


>gi|169335330|ref|ZP_02862523.1| hypothetical protein ANASTE_01742 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258068|gb|EDS72034.1| hypothetical protein ANASTE_01742 [Anaerofustis stercorihominis DSM
           17244]
          Length = 221

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 85/161 (52%), Gaps = 14/161 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I ++   +    L   + G DD V KP + R ++AR+ A+ +R  V+ N +
Sbjct: 67  VRKSSDIPIIMLTSRNNEMDELLSINYGADDYVTKPYNPRILIARIEALLKR--VNKNFS 124

Query: 127 ETGPIRVFSDGRDPEVQGEVFP-------LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +     +F +G    +    F        L + E +IL +L+ N+ + V++ ++   ++ 
Sbjct: 125 DV----IFYNGLKLNISKSTFSYNDKEIDLSKNELKILHFLLKNKSRIVSRDELMDYLWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +E V++N +  +I++LRKKL +    + +++KR  GY I
Sbjct: 181 -NNEFVDDNTLTVNINRLRKKLESVELKNFIETKRGQGYII 220


>gi|21244692|ref|NP_644274.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|294626751|ref|ZP_06705346.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|21110381|gb|AAM38810.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|292598999|gb|EFF43141.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 221

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           GE  L + R +R+H    P+I ++    L   +   D+G DD + KP    E++AR+ A+
Sbjct: 56  GESGLSVIRFMRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAV 115

Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            RR   S  R       G + +    R     G+   L   E R+L  LM   G+ V K 
Sbjct: 116 TRR---SQGRVVPLLSHGDVCMDPSSRKVTKDGKWVALSAHEYRLLLALMERAGRVVTKD 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           Q+   IYG   E    N++  ++ +LR+KL + L
Sbjct: 173 QLEEGIYGGPSEG-GSNMIAVYVHQLRRKLGDAL 205


>gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 222

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 98/212 (46%), Gaps = 15/212 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLELPRIIR 68
           L + GY  L   DGV+  G           +SARE+   +    +G  +    E+ R +R
Sbjct: 22  LEQAGYRVLTAPDGVT--GL----------TSARENSPDLVILDLGLPDFDGAEIARRLR 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S VP+I ++   ++   ++  ++G DD + KP H  E++ARV  +  R +        
Sbjct: 70  KTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARV-KVQLRHQQHGEVISI 128

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +    R     G    L  +E  +L +L    G+  ++ +I   ++   +     N
Sbjct: 129 GALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWN-GELPSNSN 187

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           VV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 188 VVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219


>gi|300697997|ref|YP_003748658.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CFBP2957]
 gi|299074721|emb|CBJ54279.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CFBP2957]
          Length = 232

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 17/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++I+D A V D     F   G+  EG+  L      E LQ +   + + +   L+  G 
Sbjct: 9   ILVIEDDARVSD-----FLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGI 63

Query: 59  KVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LEL + +RA  + VP++ ++    +   +     G DD + KP    E+LAR+ A+ R
Sbjct: 64  SGLELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLR 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R +    R +   ++V     D E       G+  PL  +E   LE LM+  G+  ++ +
Sbjct: 124 RGR--EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRER 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I S ++G  ++ +  N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 182 ILSNVWGANEDPL-TNIVDVYVRRLRSKIDEGHPVPLLKTVRGLGYRLD 229


>gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 237

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SNN A+      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218


>gi|182684578|ref|YP_001836325.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|182629912|gb|ACB90860.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
          Length = 255

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 97  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 156

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 157 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 215

Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +  +GF  +++K+ +GY +
Sbjct: 216 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 252


>gi|170754214|ref|YP_001781686.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169119426|gb|ACA43262.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 223

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R  S VP+I ++   S    L   + G DD V KP +   +LAR+  I +R    
Sbjct: 63  ICREMRKTSDVPIIIVTSRDSEVDELISMNLGADDFVTKPYNTEILLARITNILKRTYGN 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           LK +NN        +         + +   L + E +IL YL+ NRG  V +  +   ++
Sbjct: 123 LK-TNNTLNYKDFNLNLSNATLIYKDKSLELTKNEVKILSYLINNRGNIVKRDSLMEYLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              D  V+++ +  +I++LRKKL+ ++G  +P++++R LGY
Sbjct: 182 K-SDYFVDDSTLTVNINRLRKKLQ-EIGIENPIETRRGLGY 220


>gi|83594245|ref|YP_427997.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577159|gb|ABC23710.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 227

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 7/168 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + R +RA  + VP++ +S    +   +    +G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LTIVRTLRASGKTVPVLILSALGEVDDRVKGLRAGGDDYLVKPFAFAELLARIDALTRRT 119

Query: 120 KVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             S+    R   G + +    R          L  RE R+LEYLM +  + V +T +   
Sbjct: 120 AGSDAEQTRLRAGEVEMDLLARRVTRGSRTIDLQPREFRLLEYLMRHADQVVTRTMLLEN 179

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   FD   + NVV+ HIS+LR+K+        +++ R  GY +  N
Sbjct: 180 VWDYHFDP--QTNVVDVHISRLRRKMDEGFAQPFLETVRGAGYVLRTN 225


>gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           ykoG
 gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis]
 gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +  SQ P+I ++   S+   +   D G +D V KP    E+LAR+ A  R  +  
Sbjct: 66  LRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR--QNG 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + G    + D R  E   EV        L  RE  +L Y++ +  + + + QI S+
Sbjct: 124 TKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSS 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  +RKKL        + + R +GY+I
Sbjct: 184 VWG-FDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226


>gi|113969921|ref|YP_733714.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114047157|ref|YP_737707.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113884605|gb|ABI38657.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113888599|gb|ABI42650.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 227

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR          +G 
Sbjct: 75  KAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVITSGE 134

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +++    +   +  E+  +   E  ILEYLM +  + VAK ++   IYG  D+  + N +
Sbjct: 135 LKLDLAAKQVTLGNEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDPNTI 192

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 193 EVMVSRLRKKLTRDGIDNPIATIRGQGYKFN 223


>gi|313496636|gb|ADR58002.1| GltR [Pseudomonas putida BIRD-1]
          Length = 239

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 13/187 (6%)

Query: 28  GFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           G+N L   +  Q     AR  V  +   L+  GE  L L R ++A   + +I +S   S 
Sbjct: 26  GYNVLAAADGQQMRDQLARHKVELVVLDLMLPGEDGLSLCRQLQATPGLAVIMLSAKGST 85

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI--RVFSDGRDPEV 142
              +   + G DD + KP   RE++AR+ A+ RR +     AE   +  ++F+  R   V
Sbjct: 86  LDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQRLGTSAEEPVVDAQLFAGFRLEHV 145

Query: 143 Q-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
           +       GE   LPR + R+L  L+    + V++ Q+  + +G  D   ++  V+  +S
Sbjct: 146 KRLLTRPDGETLTLPRSDYRVLRELLEANNRVVSRDQLTRSAFG-RDHLPDDRSVDMCVS 204

Query: 196 KLRKKLR 202
           +LR++LR
Sbjct: 205 RLRQQLR 211


>gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
 gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA+ ++ P++ ++   +++  +   D G DD + KP    E+LAR+ AI RR K
Sbjct: 61  EVVKNLRANKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRR-K 119

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N  N  +   + V +  +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++
Sbjct: 120 YGNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               E  E N+++  I  +RKK+        + +KR LGY
Sbjct: 180 DYAYEG-ESNIIDVLIKNIRKKIDLGNSKPLIHTKRGLGY 218


>gi|157150522|ref|YP_001450697.1| response regulator protein [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|262282995|ref|ZP_06060762.1| response regulator protein [Streptococcus sp. 2_1_36FAA]
 gi|157075316|gb|ABV09999.1| response regulator protein [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|262261247|gb|EEY79946.1| response regulator protein [Streptococcus sp. 2_1_36FAA]
          Length = 218

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 7/160 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR  SQ+P++ ++      T L  F+  + D V KP     ++ R+  I RR  
Sbjct: 61  LDVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRTA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V +     G +RV  +      QGE   L ++E  ILE L   +G  V + Q+ + I+G 
Sbjct: 121 VYSEIV-IGDLRVVLEDCTIFWQGEKLALTKKEYEILEVLAKRKGHLVTRDQLMNTIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  ++  V+++HI  +RKK+       P+ +   +GY +
Sbjct: 180 SE--LDSRVLDNHIKNIRKKVPGI----PLSTITGMGYQL 213


>gi|119476400|ref|ZP_01616751.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [marine gamma
           proteobacterium HTCC2143]
 gi|119450264|gb|EAW31499.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [marine gamma
           proteobacterium HTCC2143]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 5/155 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A ++ P++ +S    +   +    +G DD + KP    E+LAR+ A+ RR K S +  + 
Sbjct: 70  ADNKSPVLILSALGEVDDRVKGLKAGGDDYLVKPFAFVELLARIEALLRRQKSSTSETKL 129

Query: 129 GPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
               +  D    +V   G  F L  RE ++LEYLM + G+ V +T +   ++   FD   
Sbjct: 130 KVADLEMDLLAHKVTRGGGGFNLQPREYKLLEYLMKHAGQVVTRTMLLENVWEYHFDP-- 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + NV++ HIS+LR+K+        + + R  GY +
Sbjct: 188 QTNVIDVHISRLRQKIDKDFDQQLLSTVRGAGYML 222


>gi|70731211|ref|YP_260952.1| DNA-binding response regulator QseB [Pseudomonas fluorescens Pf-5]
 gi|68345510|gb|AAY93116.1| DNA-binding response regulator QseB, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 220

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 107/236 (45%), Gaps = 38/236 (16%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF-------- 52
           + ++ DDRAL +   +AL      S EG+      +WLQ  A    SA+ A         
Sbjct: 3   LLLVEDDRALGQGIRVAL------SAEGYTL----DWLQDGA----SALHALRTESFDLL 48

Query: 53  ---LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
              L       LEL + +RA  Q +P++ ++        +   D+G DD + KP    E 
Sbjct: 49  LLDLGLPRLDGLELLQQLRAAQQDLPVLILTARDGTAERIAGLDAGADDYLVKPFDVEEF 108

Query: 109 LARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
            ARV A+ RR   S  RA    E   IR+    +  + Q     L   E ++L  LM   
Sbjct: 109 KARVRALLRR---SQGRAQPLLEHAGIRLDPANQQVQYQDNEVVLTPMEYQLLHQLMVRP 165

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GK V + ++  A+YG + + VE N +E  I  LRKKL ++L    + + R +GY +
Sbjct: 166 GKVVTRERLSRALYG-WQDRVESNTLEVLIHNLRKKLCSEL----IRTVRGVGYVL 216


>gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 235

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 23  LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 72  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 131

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI +  +      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 132 NTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 190

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 191 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|134298626|ref|YP_001112122.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051326|gb|ABO49297.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 223

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +  R  +  P++ +S    +++ +   + G DD + KP    E+LARV A+ RR   
Sbjct: 63  EICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRRIT 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N   +   +++  + R+    G +  L  RE  +L + M +  + + + QI   ++GL 
Sbjct: 123 ANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     NV+E +I+ LR+K+ +  G   + + R +GY +
Sbjct: 182 DFTGGSNVLEVYINMLRQKIED-YGSRIIHTVRGVGYVL 219


>gi|317500934|ref|ZP_07959144.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089166|ref|ZP_08338069.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897637|gb|EFV19698.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405943|gb|EGG85469.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 226

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L+L   IR     P+I ++   S Q  ++   +G DD + KP    E+LAR++A  
Sbjct: 59  GMNGLDLCVSIRDFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHL 118

Query: 117 RRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR + S+N+ ++      I  +SD R   ++G    L  +E  I++ L +N G+   + +
Sbjct: 119 RREQRSHNKTKSKFSEDLIIDYSD-RSLYIKGHKIELSNKEFEIIQLLSSNAGQVFDREK 177

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I+  I+G+ D   +  V++ HI K+R K 
Sbjct: 178 IYENIWGI-DGNGDSVVIKEHIRKIRLKF 205


>gi|310827010|ref|YP_003959367.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308738744|gb|ADO36404.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 230

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 13/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I IS   S+   +D    G DD + KP    E+LARV A  RR  V+ + A
Sbjct: 69  IRRSSTVPIIIISAKASVADRIDLLKLGADDFICKPFDVGEVLARVEAQLRR-AVAFSEA 127

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +G + + +D  +  ++ +   L  RE +IL  LM++  K   +  +F+ ++ 
Sbjct: 128 GGSVKILTSGDLVLDADSMEVRLKDQPVSLTVREFKILHLLMSHPKKVFTRENLFTQVW- 186

Query: 180 LFDEAV--EENVVESHISKLRKKL 201
             ++A   E+N V  HIS +R KL
Sbjct: 187 --EDAFLGEDNTVNVHISNIRSKL 208


>gi|323343000|ref|ZP_08083231.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463064|gb|EFY08259.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 231

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 8/152 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L R IR   Q+P++ ++     +  +  F +G DD V KP  + E+  RV A+ RR  
Sbjct: 60  IKLCRKIRDAHQIPILFLTAKEKEEDVVRGFSAGADDYVMKPFSYLELSVRVKALLRRYC 119

Query: 121 VSNNRAETGPIRVFSDG------RDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              ++ +     +  +G      R  EV   G +  L  RE RIL  L+ N G+     Q
Sbjct: 120 NYGSKQQGNDYEMLEEGNLRLNRRTNEVYKNGVLLDLTEREYRILRLLLGNPGRIYTMEQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +F  ++         N V  HI  LRKK+ ++
Sbjct: 180 LFEIVWEDTYFYSCSNTVMVHIRNLRKKVEDE 211


>gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
          Length = 234

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 20/219 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 22  LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
           +S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 71  NSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 130

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI +  +      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 131 NTEMVIGPIIINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|254420510|ref|ZP_05034234.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196186687|gb|EDX81663.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 231

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 4/153 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           RA    P++ ++    L+  +   D+G DD + KP    E+ AR  AI RR  +      
Sbjct: 74  RAADLTPILVLTARGGLEDRVTGLDAGADDYLVKPFDAAELSARCRAILRRPGRRMAPVL 133

Query: 127 ETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           + G +R F         G+V   L RRE  +LE LM   G  V +  +  ++Y  F+E V
Sbjct: 134 QVGGLR-FDVAARQAAHGDVPIDLSRREGDLLETLMRRAGSVVTRGSLEESLYA-FNEPV 191

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             N VE  +S+LR+KL +      + + R LGY
Sbjct: 192 TPNAVEMAVSRLRRKLDDAGCTGVLHTVRGLGY 224


>gi|163731437|ref|ZP_02138884.1| DNA-binding response regulator, putative [Roseobacter litoralis Och
           149]
 gi|161394891|gb|EDQ19213.1| DNA-binding response regulator, putative [Roseobacter litoralis Och
           149]
          Length = 234

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
           F+L++D   +    +A    DG  ++    +E           D+  ++  L  G G   
Sbjct: 16  FLLVEDNIELAQALLARLRLDGHVIDHAERIEDAMAYAQVGDYDLILLDIMLPDGDGRDF 75

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R  +     P+I ++    +   +   D G DD V KP  H E+ AR  A+ RR  
Sbjct: 76  LQHHR--QGQKDTPVIILTARSQVSDRITLLDLGADDYVTKPFDHAELEARCRAVLRRRV 133

Query: 121 VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S          +F   R    V G+   L  RE R+LE  +   G+  +K ++   ++ 
Sbjct: 134 GSAQTVTQLRDVIFDPVRGSLSVAGQSVKLRNRELRLLELFINAPGQLFSKQKLVDRLFS 193

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +DE V +N +E ++ +LRK L  ++L    + + R LGYS++
Sbjct: 194 -YDEDVSDNAIEVYVGRLRKHLEPSQL---RIRTSRGLGYSLE 232


>gi|149915232|ref|ZP_01903760.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. AzwK-3b]
 gi|149810953|gb|EDM70792.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. AzwK-3b]
          Length = 257

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 3/124 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R  +  P++ +S     +  +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRLARIDT--PILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG I V  D +  +V+G    L  +E ++LE L   +G  + K    +
Sbjct: 117 RRSKGHSQSVIRTGRINVNLDAKTVDVEGRTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176

Query: 176 AIYG 179
            +YG
Sbjct: 177 HLYG 180


>gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+     + P++ ++   S+   +   D G DD + KP    E+LAR+  + R  K S
Sbjct: 63  LKRLRSLGKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIRVLTR--KRS 120

Query: 123 NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +R      G +R+ +             L  RE  ILEYL  N+GK +++ QI + ++ 
Sbjct: 121 THRTSVIAIGDLRIDTGSHSVVRGARAIELSSREYAILEYLALNQGKVLSREQIENHVWN 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            FD +   NVV+ +IS LRKK+
Sbjct: 181 -FDYSGGTNVVDVYISYLRKKI 201


>gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 10/150 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + IR  S+VP++ IS   S          G DD ++KP    E+ ARV A  RR  
Sbjct: 62  MELLKHIRETSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRAT 121

Query: 121 V---SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V   + ++    P+  F D          +V+G+  PL  +E  IL+ L+ +  +   K 
Sbjct: 122 VYAETESKPADPPVITFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTHHSRVFTKE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           QI+  I+   D    ENV+  HI +LR+K+
Sbjct: 182 QIYQLIWE-EDYYGNENVINVHIRRLREKI 210


>gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
 gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
          Length = 231

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 65/149 (43%), Gaps = 8/149 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR+    P+I ++   + Q  +     G DD V KP    E++ARV A  RR  
Sbjct: 62  FELLRTIRSSHTYPVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQLRRYT 121

Query: 121 VSNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              +RA+           + +  D R   V G    L   E  IL YL+ +RG  VA   
Sbjct: 122 SYGSRAQAAESPTIQLDGLEINRDARSVTVDGSPVRLTPTEYSILLYLVEHRGSVVAVED 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +F A++         N V  HI  LR+K+
Sbjct: 182 LFRAVWNEDFMPGSNNTVMVHIRHLREKI 210


>gi|82545283|ref|YP_409230.1| DNA-binding transcriptional regulator QseB [Shigella boydii Sb227]
 gi|81246694|gb|ABB67402.1| QseB [Shigella boydii Sb227]
 gi|332092043|gb|EGI97121.1| transcriptional regulatory protein qseB [Shigella boydii 3594-74]
          Length = 219

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   +  E   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216


>gi|229017942|ref|ZP_04174820.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
 gi|229024164|ref|ZP_04180630.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228737121|gb|EEL87650.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228743367|gb|EEL93489.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 15/167 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR  
Sbjct: 61  LEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRR-- 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKT 171
              N  +  P   F   +D ++Q          E   L  +E  +L   M N  + + + 
Sbjct: 119 -EENTEQKHP--SFLTFKDLQLQIESRTITKGNEEIELTNKEFELLFMFMKNINRVLTRD 175

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   ++G +D  VE N+V+ ++  LR KL +    + + + R  GY
Sbjct: 176 ILLDQVWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221


>gi|113953975|ref|YP_731313.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113881326|gb|ABI46284.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 250

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 11/150 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           RI  +    P++ ++ +  +   +   D+GVDD + KP    E++AR+ A+ RR +    
Sbjct: 77  RIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRAQGFTG 136

Query: 121 -VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               N A++     G + + ++ RD    G+   L  +E  +L +LM   GK + +++I 
Sbjct: 137 SAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLERSEIM 196

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204
             ++G  D   ++N+++ +I  LR+K+ NK
Sbjct: 197 KGVWG-EDFYGDDNLLDVYIRYLRQKVENK 225


>gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 246

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 3/128 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD V KP    E++ARV AI RR +  +N+R     + +  D  +    G +  L   
Sbjct: 99  GGDDYVTKPFSLAELVARVHAILRRTRGTTNSRLVFADLELDDDTHEVTRGGRLIELTAT 158

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E R+L YL+AN  K + + Q+   ++  +D   +  V+E++IS LRKK+ +  G   + +
Sbjct: 159 EYRLLRYLLANARKVLTRAQLLDHVWD-YDFGGDSGVLETYISYLRKKI-DAEGPPLIHT 216

Query: 213 KRFLGYSI 220
            R +GY++
Sbjct: 217 VRGVGYTL 224


>gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 234

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 11/153 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTE 120

Query: 119 -LKVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            + V N   ++       G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 121 LIAVDNQEEDSKLQSLQIGDLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 212


>gi|299538648|ref|ZP_07051931.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298726235|gb|EFI66827.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 225

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 79/153 (51%), Gaps = 2/153 (1%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AET 128
           ++ +P++ ++        +  F  G DD + KP    E++ RV +I +R ++S ++  E 
Sbjct: 71  NTDLPILMLTAKGETSQKIKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRISLSQVVEA 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G +++     + E+ GE+  L  +E  +L  L +  GK  ++ Q+   I+G +D   +E 
Sbjct: 131 GHVKLNRHTHEVEMNGEMILLRLKEFELLFTLASYVGKTFSREQLIEEIWG-YDYEGDER 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            V+ HI ++R++   +     + + R LGY ++
Sbjct: 190 TVDVHIKRIRERFPQEASGIAIRTIRGLGYRLE 222


>gi|229175534|ref|ZP_04303044.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228607930|gb|EEK65242.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 229

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+  
Sbjct: 66  RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVTKK 125

Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V G    L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 PLENEDDTLSIHGIYVHFPSRTVTVDGANITLTHTEFEILVYFMKNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G ++ A ++  V SHI  LR KL  K
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEK 211


>gi|197250760|ref|YP_002147681.1| DNA-binding response regulator TctD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214463|gb|ACH51860.1| DNA-binding response regulator TctD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 19/218 (8%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65
           ++ALV++G    F  D V    F+ L  +  L S    ++ A+    I   G   LE+ +
Sbjct: 17  EKALVQNG----FAVDCV----FDGLAADHLLHS----EMYALAVLDINMPGMDGLEVVQ 64

Query: 66  IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
            +R   Q +P++ ++   ++   +   + G DD + KP    E+ AR+ A+ RR     +
Sbjct: 65  RLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGQVH 124

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             +     +F D     +QG+   L  RE+ +L  LM  R + V++ Q+F  ++ L DE 
Sbjct: 125 EIQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEV 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             E+ +E +I +LRKKL+   G D  + + R LGY ++
Sbjct: 185 SPES-IELYIHRLRKKLQ---GSDVRITTLRGLGYVLE 218


>gi|22125280|ref|NP_668703.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis KIM 10]
 gi|45442492|ref|NP_994031.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808286|ref|YP_652202.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Antiqua]
 gi|108811448|ref|YP_647215.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Nepal516]
 gi|145599475|ref|YP_001163551.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Pestoides F]
 gi|162420800|ref|YP_001607462.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Angola]
 gi|165926055|ref|ZP_02221887.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937134|ref|ZP_02225699.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008422|ref|ZP_02229320.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212312|ref|ZP_02238347.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398888|ref|ZP_02304412.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421266|ref|ZP_02313019.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424469|ref|ZP_02316222.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229838428|ref|ZP_04458587.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895415|ref|ZP_04510587.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Pestoides A]
 gi|229898995|ref|ZP_04514139.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901707|ref|ZP_04516829.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Nepal516]
 gi|270489901|ref|ZP_06206975.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504581|ref|YP_003568643.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis Z176003]
 gi|21958154|gb|AAM84954.1|AE013741_1 transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis KIM 10]
 gi|45437357|gb|AAS62908.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108775096|gb|ABG17615.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108780199|gb|ABG14257.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|145211171|gb|ABP40578.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|162353615|gb|ABX87563.1| transcriptional regulatory protein BaeR [Yersinia pestis Angola]
 gi|165914997|gb|EDR33609.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922259|gb|EDR39436.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992804|gb|EDR45105.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206243|gb|EDR50723.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960755|gb|EDR56776.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051392|gb|EDR62800.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056351|gb|EDR66120.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681636|gb|EEO77730.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Nepal516]
 gi|229687940|gb|EEO80012.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229694794|gb|EEO84841.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701570|gb|EEO89597.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Pestoides A]
 gi|262362424|gb|ACY59145.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis D106004]
 gi|262366567|gb|ACY63124.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis D182038]
 gi|270338405|gb|EFA49182.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355040|gb|ADE65381.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis Z176003]
 gi|320014344|gb|ADV97915.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 239

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 36  EWLQSSA------REDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           +WL + A      R+   AI    L+  G   + L R IR  S +P++ ++        L
Sbjct: 39  QWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITLCREIRRFSDIPIVMVTAKTEEIDRL 98

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVF 147
              + G DD + KP   RE++ARV  I RR     ++  +  P+ +         QG + 
Sbjct: 99  LGLEIGADDYICKPYSPREVVARVKTILRRCSQQRHQPTDDAPLLINESRFQASYQGHML 158

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            L   E R+L+ L +  G   ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 159 ELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKL 211


>gi|296395434|ref|YP_003660318.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296182581|gb|ADG99487.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 238

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 9/140 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---G 129
           +P+  +S   S+   ++  ++G DD + KP    E++ARV A+ RR   ++  A T   G
Sbjct: 80  IPICVLSARSSVGDRIEGLEAGADDYLTKPFVLGELIARVKALLRRPSTTSRAAPTVEYG 139

Query: 130 PIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            I V        GR   V  E   L +RE  +L  L  N G  +++T++   ++G +D A
Sbjct: 140 VIHVDYLGVDIPGRRVTVDDESIELTKREFELLAALAENTGVVLSRTELLERVWG-YDFA 198

Query: 185 VEENVVESHISKLRKKLRNK 204
            + NVV+  +  LRKKL  K
Sbjct: 199 ADTNVVDVFVGYLRKKLELK 218


>gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 226

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 6/142 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I +S        +    +G DD + KP +  E++ARV +  RR K  N RA
Sbjct: 68  IREEKNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKKYNERA 127

Query: 127 E-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           E      G + +    R   V+G+   L  +E  ILE L+ ++G  ++  +I+ A++   
Sbjct: 128 ERDIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLVRHKGTVMSMGKIYEAVWQ-E 186

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D    +N V  HI+K+R+K+ +
Sbjct: 187 DAFKSDNTVMVHITKIREKIED 208


>gi|289549712|ref|YP_003470616.1| Two-component response regulator YvcP [Staphylococcus lugdunensis
           HKU09-01]
 gi|315659659|ref|ZP_07912520.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289179244|gb|ADC86489.1| Two-component response regulator YvcP [Staphylococcus lugdunensis
           HKU09-01]
 gi|315495392|gb|EFU83726.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 221

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I IS        +     G DD + KP +    + ++ A+ RR   L V++
Sbjct: 66  IRKSSNVPIIFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTITKIQALLRRTYDLTVNH 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N       ++  D      + E   L   E +I++ L  N+GK V++T +    +   + 
Sbjct: 126 NETTVRDCKLIIDEATLYYKEESVHLSFTELQIIKMLFDNQGKYVSRTALIEKCWE-SEH 184

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +++N +  ++++LRKKL N +G  D +++K+ +GY +
Sbjct: 185 FIDDNTLAVNMTRLRKKL-NSIGLEDFIETKKNIGYKV 221


>gi|225570609|ref|ZP_03779634.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
           15053]
 gi|225160622|gb|EEG73241.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
           15053]
          Length = 241

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           ++ R  S +P+I ++        L  ++ G DD + KP   + +LA+  A+ RR   +  
Sbjct: 84  KLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSPAPL 143

Query: 125 RA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            A   G I V        + G+   L  +E  +L +LM N G+  A+ Q+ + I+G +D 
Sbjct: 144 DALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRIWG-YDF 202

Query: 184 AVEENVVESHISKLRKKL 201
                 V++HI  LR+KL
Sbjct: 203 EGTTRTVDTHIKTLRQKL 220


>gi|167724100|ref|ZP_02407336.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
          Length = 219

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 55  GKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+G   L+  R +RA  S VP+I ++    +   +   ++G DD + KP    E+ ARV+
Sbjct: 57  GRG---LDFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVS 113

Query: 114 AIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR   + N   + G + V    R     G    L   E  +LE L+ + G  ++K Q
Sbjct: 114 AVARRYSGNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +Y   DE V  N +E ++S+LRK    KLG + +++ R LGY +
Sbjct: 174 LEERLYSFSDE-VGSNTIEVYVSRLRK----KLGAELIETVRGLGYRL 216


>gi|161507847|ref|YP_001577811.1| two-component system regulator [Lactobacillus helveticus DPC 4571]
 gi|260103140|ref|ZP_05753377.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|160348836|gb|ABX27510.1| Two-component system regulator [Lactobacillus helveticus DPC 4571]
 gi|260083050|gb|EEW67170.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|323466118|gb|ADX69805.1| Two-component system regulator [Lactobacillus helveticus H10]
 gi|328464789|gb|EGF36104.1| two-component system regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 24/181 (13%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+ +  +D  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 38  LEDALNQDFDAILLDLMLPDLNGLEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKV-----------------SNNRAETGPIRVFSDGRDP 140
            + KP    E+LAR+ A+ RR+K+                  N   ET   R+   G   
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVKIEKDASRVTVAKQKIVKFKNLTIETAN-RIVHRG--- 153

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
              G+   L +RE  +L  L+ N+   V++ Q+ + I+G  +  +E NVVE ++  LR K
Sbjct: 154 --DGKAIDLTKREYNLLMTLIENKNNVVSRDQLLNKIWG-PESNIETNVVEVYVRYLRNK 210

Query: 201 L 201
           +
Sbjct: 211 I 211


>gi|119897266|ref|YP_932479.1| two-component response regulatory protein [Azoarcus sp. BH72]
 gi|119669679|emb|CAL93592.1| probable two-component response regulatory protein [Azoarcus sp.
           BH72]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 3/159 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+    S +P++ ++    ++  +   D+G DD + KP    E+ ARV A+ RR    
Sbjct: 63  LKRLRARKSALPVLILTAQDGVEDRVRGLDAGADDYLTKPFALPELEARVRALTRRGTGQ 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E G +      R  ++ G+V  L  RE  +LE  +   G+ V+K Q+   + G + 
Sbjct: 123 PRCIEVGNLSYDQADRVVKICGQVVELSAREIGLLEVFILRVGRLVSKDQLVDHLCG-WG 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E V  N +E ++ +LRKKL    G   V + R LGY ++
Sbjct: 182 EEVSSNAIEVYVHRLRKKLEAS-GVRIV-TVRGLGYCLE 218


>gi|118468513|ref|YP_889895.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169800|gb|ABK70696.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis str.
           MC2 155]
          Length = 236

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 15/190 (7%)

Query: 23  GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75
           G+ L GF+   +++  E L+S+     +  +A ++     VL+   ++ A     + VP+
Sbjct: 29  GLRLSGFDVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 85

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPI 131
             +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+   + GP+
Sbjct: 86  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSSATFSSETIQVGPL 145

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+
Sbjct: 146 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 204

Query: 192 SHISKLRKKL 201
             I  LR+KL
Sbjct: 205 VFIGYLRRKL 214


>gi|84683692|ref|ZP_01011595.1| two-component response regulator [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84668435|gb|EAQ14902.1| two-component response regulator [Rhodobacterales bacterium
           HTCC2654]
          Length = 223

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L L + +RA     P I ++    ++  +   ++G DD + KP    E+ ARVAA+ RR 
Sbjct: 60  LSLVKALRAARVATPAIFLTSVGGVEDRIAGLEAGGDDYLVKPFAFGELSARVAALTRRP 119

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+      + G + +    R+    G    L  RE  +LE+L+  +G+   +T +   +
Sbjct: 120 PLQAEETTLKAGDLEMDLVRREVRRAGRPIDLLPREFALLEHLLRRKGRVQTRTMLLENV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + FD     NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 180 WDIHFDPGT--NVVETHISRLRAKVDKPFDHELIRTVRGAGYRID 222


>gi|332880617|ref|ZP_08448291.1| response regulator receiver domain protein [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332681605|gb|EGJ54528.1| response regulator receiver domain protein [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 227

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 4/150 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  VL   + +R    V +I   D  S++  ++  + G DD + KP H  E+ ARV +
Sbjct: 57  GSGLSVLAHLKRMRKQESVIIISAKD--SIEDKVEGLNLGADDYLAKPFHLAELNARVKS 114

Query: 115 IYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR K   + +   G + +  D R   V G    L R+E  +L Y ++N  + + +  +
Sbjct: 115 LLRRKKAGGDTSIVLGNLTLVPDTRKVTVDGNELNLNRKEFDLLYYFISNPNRLINRMAL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLR 202
             +++G   D+A   + + S +  LRKK++
Sbjct: 175 AESVWGDHIDQADSLDFIYSQVKNLRKKMK 204


>gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
 gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           EE LQ + +E    I   ++  G    E+ + IRA   +P++ +S        +     G
Sbjct: 35  EEGLQKALQEHYDLIILDIMLPGVNGFEICKQIRAVKNIPILFVSAKKEDIDKIRGLGLG 94

Query: 95  VDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFS-----DGRDPEVQGEVFP 148
            DD + KP    E++ARV A   R  +++  + +T  I V         R   + GE  P
Sbjct: 95  ADDYITKPFSPSELVARVKAHLERYERLAGKQTQTNTIFVHGITIDKSARKVYIDGEETP 154

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
              +E  +L +L+ +  + ++K Q++  I+GL + A + + V  HI K+R K+      D
Sbjct: 155 FTTKEFDLLVFLLMHPNQVLSKEQLYEKIWGL-ESAADVSTVTVHIRKIRGKIEG----D 209

Query: 209 PVDSK 213
           P   K
Sbjct: 210 PAQPK 214


>gi|298501422|ref|YP_003723419.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298235162|gb|ADI66296.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 244

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 102/206 (49%), Gaps = 27/206 (13%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSG 94
           ++L++   E   AI  +++  G   +EL + +R+H  + P++ ++    ++  +   DSG
Sbjct: 38  QYLETGWTEYTLAIFDWML-PGVSGIELCKWLRSHQLILPVLMLTAKDRIEEKIIGLDSG 96

Query: 95  VDDVVNKPIHHREILARVAAIYRRL---------KVSNNRAETGPI----------RVFS 135
            DD + KP    E+LAR+ A+ RR          +V     + G +          R +S
Sbjct: 97  ADDYLVKPFDMAELLARLRALQRRSSYVGTTLTPQVQPRHLQVGCLTLNYSTHQLHRQYS 156

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
            G++     +VF L  +E ++LEY M +  + V++ QI S ++ +  E V  NVV + I 
Sbjct: 157 HGKN-----QVFSLTVKEFQLLEYFMRHPHQIVSRDQIISQLWEIGAEPV-SNVVAAQIR 210

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSID 221
            LR+KL  +     +++   +GY ++
Sbjct: 211 LLRRKLGEEEKESLIETVYGVGYRLN 236


>gi|152999147|ref|YP_001364828.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160873754|ref|YP_001553070.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|151363765|gb|ABS06765.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160859276|gb|ABX47810.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315265979|gb|ADT92832.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 227

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 16/217 (7%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQ-----SSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           IA F  +G+  + FN     +  Q     S+   DV  ++  L G+    L++ R +R  
Sbjct: 12  IADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGR--DGLDILRSLRQQ 69

Query: 71  S-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AET 128
               P+I ++    L   +   D G DD + KP +  E+ AR+ A+ RR   +     E 
Sbjct: 70  GVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHGGTQQHVVEV 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187
           G +++    R    QG+   L  RE  +LE+LM +  + + + Q+   ++G  FD     
Sbjct: 130 GALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWGYDFDPCT-- 187

Query: 188 NVVESHISKLRKKLRN--KLG--FDPVDSKRFLGYSI 220
           NVV+  I ++R K+ +  K G     ++S R  GY +
Sbjct: 188 NVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224


>gi|83954225|ref|ZP_00962945.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83841262|gb|EAP80432.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 5/156 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             +Q P++ ++    +   ++  ++G DD + KP    E+ ARVAA+ RR + + +    
Sbjct: 70  TKNQTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPRGTQDEIVL 129

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             G + +    R     G+   L  RE  +LE+L+  +G+   +T +  A++ + FD   
Sbjct: 130 RAGDLEMDLVRRKVTRAGQPIDLLPREFALLEHLLRRKGRVQTRTMLLEAVWDISFDP-- 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + NVVE+HIS+LR K+      + + + R  GY I+
Sbjct: 188 QTNVVETHISRLRAKVDKPYEVELIKTVRGAGYRIE 223


>gi|289423284|ref|ZP_06425094.1| two-component response regulator [Peptostreptococcus anaerobius
           653-L]
 gi|289156315|gb|EFD04970.1| two-component response regulator [Peptostreptococcus anaerobius
           653-L]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 2/157 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S +P+I ++   + +  L  F++G D+ + KP     + AR+  ++RR   
Sbjct: 60  EYLKWLREFSSIPVIMLTVKNADEYVLKGFENGADEYITKPFSLPILKARIDNLFRRKDT 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +NN      + +       ++  E   L R+E  +LE L+ N+   + + +I  +++G  
Sbjct: 120 NNNEIVFHELSLNLTSMTAKLNNENLELNRQEFAVLELLLENKNINIIREKIIDSVWGYD 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              V +N +   I +LR KL++   +  + + R LGY
Sbjct: 180 LYEVNDNTLTVTIKRLRNKLKDYGKY--IKTVRGLGY 214


>gi|238755886|ref|ZP_04617215.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           ruckeri ATCC 29473]
 gi|238705907|gb|EEP98295.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           ruckeri ATCC 29473]
          Length = 226

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 14/158 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I +S   S +  +   D+G DD ++KP    E+LARV    RR   +  
Sbjct: 61  RDLRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHGAA-- 118

Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  PI  FSD       R  +  GE   L   E R+L  L+AN GK + + Q+ + ++
Sbjct: 119 -GQENPIVSFSDVSVDLINRQVKRAGEELHLTPIEFRLLTALLANAGKVITQRQLLNQVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           G     VE N    ++      LR KL  DP   K  L
Sbjct: 178 G--PNYVEHN---HYLRIYMGHLRQKLEDDPTRPKHLL 210


>gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 220

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LDVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQ 119

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +Y
Sbjct: 120 SGRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G + E +  N VE +I  LRK    KLG + + + R LGY I
Sbjct: 180 G-WGEEIGSNTVEVYIHALRK----KLGAELIRNVRGLGYMI 216


>gi|164685948|ref|ZP_01947601.2| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165924183|ref|ZP_02220015.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
 gi|164601469|gb|EAX31777.2| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165916370|gb|EDR34974.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
          Length = 223

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 17/226 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + DG  A     G +++     +    + SS  E    I   L       L+
Sbjct: 4   LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR  +   P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 64  VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR--- 120

Query: 122 SNNRAETGPIRVFSD-GRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFS 175
           S  RA+  PI    D   DP      F      + RRE  +L+ L+ N G+ +++ Q+  
Sbjct: 121 SKERAK--PIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQ 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +YG + E ++ N +E HI  LRK+   KL    + + R +GY ++
Sbjct: 179 TLYG-WGENIDSNALEVHIHNLRKRFGAKL----IRTIRGVGYMVE 219


>gi|94972066|ref|YP_594106.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554117|gb|ABF44032.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 134

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           + D GVDD V KP   RE++ARV A+ RR+ V    A  G +R+   G    + GE   L
Sbjct: 2   YLDFGVDDYVVKPFSPREVVARVRALLRRVGVQEEIA-VGDLRIDLRGHSASLSGERLEL 60

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            + E  +L  L  + G    + ++   ++G  D    E VV+ HI+ LRKKL      D 
Sbjct: 61  SKLEFDLLSALAQHPGMAWPRERLLERVWG-SDFPGTERVVDVHITGLRKKL-----GDT 114

Query: 210 VDSKRFL 216
            D+ RF+
Sbjct: 115 SDTPRFI 121


>gi|83647683|ref|YP_436118.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83635726|gb|ABC31693.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 79/146 (54%), Gaps = 6/146 (4%)

Query: 61  LELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +++ R +R   +  +P++ ++   + +  ++  ++G DD + KP    E++AR+ A+ RR
Sbjct: 60  IDILRKVRQQQEWPIPVLFLTQREAEEDIIEALEAGADDYMVKPARPGELIARLKALSRR 119

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +   + AE    GP  +    R  ++ GE   L  ++  +  +L  N+G+ +++  +  
Sbjct: 120 NRTEESDAEEASYGPFSINHKKRTIQLNGEPLTLTDKDFDLTTFLFENKGRLLSRKYLLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G+  + +    V++H+S+LR+KL
Sbjct: 180 RVWGVSSD-INTRTVDTHMSRLRRKL 204


>gi|325300034|ref|YP_004259951.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
 gi|324319587|gb|ADY37478.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 80/149 (53%), Gaps = 12/149 (8%)

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R+++A+     +P+I I+   +   T+  F+ G DD ++KP   RE++ RV A+ RR
Sbjct: 63  KMARMLKANKDTVNIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 122

Query: 119 LKVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +  R E+  ++     +    +   ++GE   L ++E  IL  L+ N G+  ++  I
Sbjct: 123 -TANLQRKESEELQYKGLVINVPQKKVTIEGEEISLTKKEFEILSLLLQNAGRVFSREDI 181

Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKL 201
            S ++   DE  V +  ++ +I++LRKK+
Sbjct: 182 LSKVWN--DEVYVLDRTIDVNITRLRKKI 208


>gi|319942060|ref|ZP_08016379.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804444|gb|EFW01322.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
          Length = 227

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 6/153 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127
           A + +P+I ++   +L+  L+  D+G DD + KP H  E+LAR+ A+ RR    + N   
Sbjct: 72  AKNDIPVIILTARDALEDRLNGLDAGADDYLVKPFHMSELLARMRAVMRRRNGAAANVLS 131

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +    +  E  G+ + L +RE  +L  L+A  G  +++  +   IY + +E  + 
Sbjct: 132 NGDLSLSEAAKTVERAGQTYTLTKREYALLSALLARPGAILSRRALEDRIYAVGEEP-DS 190

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N VE  I  LRK    KLG D V + R LG+ +
Sbjct: 191 NAVEYLIHALRK----KLGADAVKNVRGLGWMV 219


>gi|298250454|ref|ZP_06974258.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548458|gb|EFH82325.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 9/139 (6%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   + P+I ++    L+  ++  DSG DD + KP    E+LAR+ A+ RR         
Sbjct: 68  RKGRETPVILLTAKGDLEDKVEGLDSGADDYLPKPFQAEELLARLRALGRR---KGQFLP 124

Query: 128 TGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            G +R      +P       +G  F L  +E ++LE L+ N+G  ++   I   ++G +D
Sbjct: 125 DGLLRFEDIELNPHTLNLYCKGNSFHLTLKESQLLELLIRNKGTLLSPNLIIEKLWG-YD 183

Query: 183 EAVEENVVESHISKLRKKL 201
              E++ V  H++ LRKKL
Sbjct: 184 TEAEDSHVRVHVAFLRKKL 202


>gi|290352241|dbj|BAI78831.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D GVDD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGVDDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|229011362|ref|ZP_04168553.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228749879|gb|EEL99713.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 223

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++   S    L   + G DD + KP +   +LARV  I RR   +
Sbjct: 63  ICREIRKTSDVPIIMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +T  I ++ D            Q +   L + E +IL  L+ NRG  V +  +   
Sbjct: 120 SGDLKTNHILIYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGYIVKRDSLIET 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           ++   D  V+++ +  +I++LRKKL  ++G  +P+ ++R LGY
Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLE-EIGIENPIATRRSLGY 220


>gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 261

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 10/167 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R IR     P+I ++        +   + G DD V KP   REI+AR+ AI RRL+
Sbjct: 92  FEACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151

Query: 121 VSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 +   +R F         D R+  V GE      +E  +L  L+ + G   ++ Q
Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +   ++G FD   +   ++ HI K+R++L +KL +D + +   +GY 
Sbjct: 212 LLEQVWG-FDYFGDVRTIDVHIKKIRQRL-DKLPYDCIQTVWGIGYK 256


>gi|153808092|ref|ZP_01960760.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185]
 gi|149128995|gb|EDM20211.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185]
          Length = 229

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 10/152 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ 
Sbjct: 61  GFKMANMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120

Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR   +    E  P R+           +   + GE   L ++E  IL  L+ N+G+  +
Sbjct: 121 RR--TATAETERAPERLVYQSLVIDITKKKVSIDGEEVQLTKKEFEILLLLVQNKGRVFS 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  I + I+   +  V +  ++ +I++LRKK+
Sbjct: 179 REDILTRIWS-NEVYVLDRTIDVNITRLRKKI 209


>gi|332306808|ref|YP_004434659.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174137|gb|AEE23391.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 244

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 10/173 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L++ R +RA  QVP++ ++        +   + G DD + KP + RE+ AR+ AI 
Sbjct: 62  GMSGLDVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAII 121

Query: 117 RRLKVS-NNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR + S  N  +T P        I + +  R   V     PL   E   L  LM   G+ 
Sbjct: 122 RRTENSLGNGLDTKPIVHTQLHGIELDTGTRTALVNNTPLPLTSAEFNALSLLMTRAGQT 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++K  +   +     EA +   ++ HIS++R+KL ++   D + S R +GY +
Sbjct: 182 ISKQDMTQEVLNRPLEAYDR-AMDVHISRIRQKLSSEGINDVIKSIRGVGYQM 233


>gi|294140509|ref|YP_003556487.1| transcriptional regulatory protein PhoP [Shewanella violacea DSS12]
 gi|293326978|dbj|BAJ01709.1| transcriptional regulatory protein PhoP [Shewanella violacea DSS12]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 5/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR       +  +G 
Sbjct: 72  KAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSSGFVRPKINSGA 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    +   +      +   E  ILEYLM +  + VAK ++   IYG  D+  + N +
Sbjct: 132 LELDLAAKQVSMNSVPMEITAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDPNTI 189

Query: 191 ESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           E  +S+LRKKL  K G D P+ + R  GY  D
Sbjct: 190 EVMVSRLRKKL-TKEGLDNPIATIRGQGYKFD 220


>gi|257790147|ref|YP_003180753.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317489597|ref|ZP_07948102.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|257474044|gb|ACV54364.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911329|gb|EFV32933.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 237

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 79/152 (51%), Gaps = 2/152 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           R    VP++ ++   ++   +   DSG DD + KP    E+LA + A+ RR  +V   + 
Sbjct: 68  RKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQGEVLFEKL 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +  +  D     +   L  +E  + + LMAN G+ V+K  + + ++G+ + + E
Sbjct: 128 AAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWGV-ESSAE 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +N VE+++S LRKK++       +++ R  GY
Sbjct: 187 DNNVEAYVSFLRKKMKFLGSTARIETLRRAGY 218


>gi|182679189|ref|YP_001833335.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635072|gb|ACB95846.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 235

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 18/160 (11%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           +A   +P++ ++        ++  D+G DD V KP H  E+LAR+ A+   L+ S  RA 
Sbjct: 68  KAERSMPVLILTARDRWSDKVEGIDAGADDYVAKPFHMEEVLARLRAL---LRRSAGRAS 124

Query: 128 ----TGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
                GP+++  D R   V  E  P  L   E R+L Y+M + G+ +++++I   +Y   
Sbjct: 125 DELVCGPVKL--DTRSGAVTVEDVPVKLTSHEYRLLAYMMLHAGRVISRSEIIEHLYDQD 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + N +E  + +LRK    KLGFD +++ R LGY +
Sbjct: 183 FDR--DSNTIEVFVGRLRK----KLGFDIIETLRGLGYRV 216


>gi|188990240|ref|YP_001902250.1| two-component system response regulator [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732000|emb|CAP50188.1| two-component system response regulator [Xanthomonas campestris pv.
           campestris]
          Length = 290

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR +   +        
Sbjct: 130 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQLGAF 189

Query: 133 VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           VF +      + G    LP RE R+LE L+   G+ V K +I + ++G FD+    N +E
Sbjct: 190 VFDNAAHTVSLDGVAIELPNREYRLLEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 248

Query: 192 SHISKLRKKL 201
            ++ +LR+KL
Sbjct: 249 LYVGRLRRKL 258


>gi|330897348|gb|EGH28767.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 227

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ + +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 63  GRDGMDICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   S      G ++V          G    L   E R+L     + G+  ++  +   
Sbjct: 123 RRSSSSETHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SHI  LR+KL     G DP+ S   +GY ++ 
Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227


>gi|291547167|emb|CBL20275.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 223

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  SQVP+I IS        +       DD + KP     ++A++ AI RR     N  
Sbjct: 68  IRKVSQVPVIFISSAADNMNMVMAMSRVADDFIAKPFDMDVLVAKIQAILRRTYSFGNPG 127

Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G +   S        GE   L R E RILE L +  GK V++  I + ++   D
Sbjct: 128 NVLEHKGAVLNLSRAT-LTWNGEETELTRNELRILELLFSQAGKPVSRDAIMTKLWE-SD 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V++N +  +I++LRKKL      D + +++ LGY +
Sbjct: 186 SFVDDNTLTVNITRLRKKLEAAGLVDFIITRKGLGYMV 223


>gi|261417826|ref|YP_003251508.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319767364|ref|YP_004132865.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374283|gb|ACX77026.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317112230|gb|ADU94722.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 21/166 (12%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R IRAHS VP++ +S  D+P+    +     G DD + KP H   ++A++ A+ RR+   
Sbjct: 64  RQIRAHSNVPILFLSSRDHPT--DMVMSMQLGADDYIQKPFHFDVLIAKIQALLRRVYNY 121

Query: 123 NNRAETGPIRVFS------DGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIF 174
           N     GP+++ +      D     V  E     L + E  IL++L+A + + VA+T++ 
Sbjct: 122 N----AGPVQLQTWCGATVDYEKSTVSNEHGTVELTKNELLILKHLLAKKNQIVARTELI 177

Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
             ++   DE  V +N +  ++++LRKKL ++LG    +++K   GY
Sbjct: 178 KRLWE--DERFVSDNTLTVNVNRLRKKL-DELGLGRFIETKVGQGY 220


>gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 247

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 20/217 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 35  LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 83

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 84  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGSAEKEE 143

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI +  +      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 144 NTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 202

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
              +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 203 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGY 239


>gi|158340539|ref|YP_001521533.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310780|gb|ABW32394.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 248

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 8/148 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           +R  S+VP+I ++    ++  +   + G DD + KP   +E+ +RV  I RR   LK  N
Sbjct: 78  VRKTSRVPIIMLTALSEVKDRITGLEMGADDYMVKPFSPKELESRVRCILRRLSPLKAFN 137

Query: 124 NRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++     E G +++ +D R      E   L  +E  +L  L +  G+ V++ ++   ++ 
Sbjct: 138 HQMTGVIEIGSVQIDTDKRQVFRDHERVFLTYKEFNLLALLASRPGETVSRQELLQKVWE 197

Query: 180 LF-DEAVEENVVESHISKLRKKLRNKLG 206
              D  V+   V+ H+S+LR+KL+ KLG
Sbjct: 198 YNKDSIVDTRTVDVHMSRLRQKLKEKLG 225


>gi|257790446|ref|YP_003181052.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474343|gb|ACV54663.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 243

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 99/243 (40%), Gaps = 32/243 (13%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            V+I+D A + +        +G +  + F+  E    L  S   D+   +  L G  GE 
Sbjct: 7   IVIIEDDADINEVVAVHLRRNGFACTQAFSGSEGRLLLSGSEPFDLVITDLMLPGMAGED 66

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           V+   R++RA   +P+I +S   +    +     G DD + KP    E+LARV    R  
Sbjct: 67  VV---RLVRARGDMPVIVMSARTTAADKVALLKLGADDYLTKPFDLDELLARVQVQLRHA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPE----------------------VQGEVFPLPRRERRIL 157
            V    A   P    SD R PE                      VQGE   L R E  IL
Sbjct: 124 DVRRASASGAP----SDERLPEPAAAAAMRYKDWTLDVDARTLSVQGEPVRLTRLEFNIL 179

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           E L+    K   K ++F   +   + AVEE  +  H+S +R KLR       +++   +G
Sbjct: 180 EALVRRPRKVFTKRELFEIAWN-EESAVEEKAINVHVSNIRSKLRAAHSAGEIETVWGIG 238

Query: 218 YSI 220
           + +
Sbjct: 239 FKL 241


>gi|256422749|ref|YP_003123402.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256037657|gb|ACU61201.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 266

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 87/170 (51%), Gaps = 10/170 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +V E+ R  R ++ +P+I ++    +   +  F+ G DD + KP   RE++AR+    
Sbjct: 98  GYEVCEVIR--RKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFL 155

Query: 117 RRLKV---SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +R       NN+ +   G + +  + ++    G+   L  +E ++LE+L  ++GK ++K 
Sbjct: 156 KRAGSEVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKL 215

Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I   ++ + FD     NV+E +++ LRKK+        + +K  +GY +
Sbjct: 216 VIAEKVWDIDFDTGT--NVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYL 263


>gi|197301618|ref|ZP_03166691.1| hypothetical protein RUMLAC_00345 [Ruminococcus lactaris ATCC
           29176]
 gi|197299348|gb|EDY33875.1| hypothetical protein RUMLAC_00345 [Ruminococcus lactaris ATCC
           29176]
          Length = 226

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 15/161 (9%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
           + ++P I ++     Q  L  FD G +D V KP   + +L R+   +RR     NR E  
Sbjct: 70  NRKIPAIFLTARDEEQEMLKAFDLGAEDYVVKPFSMKVLLKRIEVAFRR-----NRGEDA 124

Query: 130 PIRVFSD-------GRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             ++           R   V GE    L  +E ++LEYLM N+G+ + K  I   ++G+ 
Sbjct: 125 GEQILKCRNLNLYPQRKKAVSGENEISLTAKEYQLLEYLMKNQGQVLTKENILEHVWGID 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
            + V +N V   + +LRKK+    G  P     F LGY ++
Sbjct: 185 GQYVVDNSVSVLVGRLRKKIEAA-GERPYIQNVFGLGYRME 224


>gi|167464300|ref|ZP_02329389.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 227

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----- 117
           + R IR  S +P+I ++       TL  F+ G DD V KP     +LAR   +       
Sbjct: 64  VCRRIRKTSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYAI 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + N   +  I V    R  +V G+   L   E  IL YLM N+G  + + Q+ + I
Sbjct: 124 EEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITKI 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G ++ + ++  V SHI  LR KL +K
Sbjct: 184 WG-YEFSGDDRTVNSHIRNLRTKLGDK 209


>gi|154496539|ref|ZP_02035235.1| hypothetical protein BACCAP_00831 [Bacteroides capillosus ATCC
           29799]
 gi|150274172|gb|EDN01263.1| hypothetical protein BACCAP_00831 [Bacteroides capillosus ATCC
           29799]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 3/126 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRR 152
           G+DD + KPI   E++ R+ A+ RR K++ +R  E G   + +D     + GE  PL  R
Sbjct: 100 GIDDYMVKPIDLDELMLRIGALLRRAKIAASRKIEVGSFVMDADEHTACLNGEEIPLTAR 159

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  +L  L++   K   ++Q+    +G+ D A     V+ +++KLR KL     F+ V +
Sbjct: 160 EFSLLYKLLSYPKKTFTRSQLMDEFWGV-DTASGPRTVDVYMTKLRSKLAACDSFEIV-T 217

Query: 213 KRFLGY 218
              LGY
Sbjct: 218 VHGLGY 223


>gi|89896744|ref|YP_520231.1| hypothetical protein DSY3998 [Desulfitobacterium hafniense Y51]
 gi|89336192|dbj|BAE85787.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 6/145 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S  P+I ++    L+  L   + G DD + KP   RE++AR+ A+ RR  +
Sbjct: 61  EICREIRKISATPVIMLTAKVELEDRLQGLNLGADDYIGKPFSPREVVARIKAVLRRTHI 120

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +++      + + +   +  +Q EV  L   E +IL  L    G+  ++ Q+   
Sbjct: 121 ETSLLADSITYDNGLTIDNAQHEVRLQEEVISLTPTEFKILGALAKYPGRVYSRGQLVQI 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           + G  D   +E V+++HI KLR+KL
Sbjct: 181 VQG-HDFGGDERVIDAHIKKLRQKL 204


>gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 222

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 26/211 (12%)

Query: 3   VLIDD----RALVK-----DGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           +++DD    RALVK     +GY+     DG  +LE   +  F          D+  ++  
Sbjct: 5   LIVDDDTHMRALVKTYAEIEGYLCFEASDGKETLEKLTNHSF----------DLILLDVM 54

Query: 53  LIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           + GK G + L     IR     P+I I+        L  F+ G DD + KP   +E++AR
Sbjct: 55  MPGKDGFQTLSE---IRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMAR 111

Query: 112 VAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ +R  +    +   G + V        ++G   PL  +E  +L YL  N    +++
Sbjct: 112 IKAVLKRSSQFQFEKIVYGDLEVNVFSHTVTIKGNPLPLTPKEFDLLVYLTKNNHIALSR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             I   ++G FD   +   V++HI  LR++L
Sbjct: 172 ESILEGVWG-FDYFGDTRTVDTHIKSLRERL 201


>gi|296535704|ref|ZP_06897875.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
 gi|296263965|gb|EFH10419.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
          Length = 238

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-- 130
           +P+I ++     Q  +   D+G DD + KP     ++AR+ A+ RR   S   A  G   
Sbjct: 85  LPIIMVTARTEDQDAVRALDTGADDYIAKPFVMDALMARIRALLRR---SGGVATKGTLA 141

Query: 131 ---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              + +  D       G    L   E R+LE+ + + G+  ++ Q+  A++G  D  VE 
Sbjct: 142 WHDVTMDQDAHRVSRNGRALHLGPTEYRLLEFFLQHPGRVFSREQLLDAVWG-RDIHVEP 200

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V+ HI +LRK +  +   D + + R  GY++D
Sbjct: 201 RTVDVHIRRLRKAVNGEGEVDIIRTVRSAGYALD 234


>gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 232

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 93/200 (46%), Gaps = 21/200 (10%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY     +DG   LE FN L          + D+  ++  +       LE+ R IR
Sbjct: 23  LTKEGYQVTTANDGEEGLEKFNQL----------KPDMVLLDVMMPRMDG--LEVCRRIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
                P++ ++        +   + G DD + KP   +E++AR+ A+ RR  V+ ++ E+
Sbjct: 71  KLGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCTVTTSQTES 130

Query: 129 GP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+   ++G F
Sbjct: 131 SEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLLDEVWG-F 189

Query: 182 DEAVEENVVESHISKLRKKL 201
           +   +   ++ H+ +LR+KL
Sbjct: 190 EYYGDSRTIDVHVKRLREKL 209


>gi|270262846|ref|ZP_06191117.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043530|gb|EFA16623.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 5/162 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+ +    +P++ ++    +   +   + G DD + KP    E+ AR+ A+ RR + V
Sbjct: 63  LARLRKRGQDLPVLLLTARTDVADRVKGLNLGADDYLTKPFELDELEARIRALLRRSVGV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    + G +    +G   ++  +   L  RE  +L  L+  RG+ VAK Q+F  ++ L 
Sbjct: 123 TQQALQYGALTYHDEGYF-QLDDKPLSLTPRELAVLTALIHRRGRPVAKQQLFEQVFTLS 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           DEA  E+ +E ++ +LRKKL+       + + R LGYS++ +
Sbjct: 182 DEANPES-IELYVHRLRKKLQGS--NVAIVTLRGLGYSLELS 220


>gi|268680656|ref|YP_003305087.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
 gi|268618687|gb|ACZ13052.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 25/179 (13%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           +G+ V +  R  + H+  P+I +S   ++   +     G DD + KP    E+LAR+   
Sbjct: 58  QGDVVCQKLREQKLHT--PIIVLSAKSTISDKVGLLHLGADDYLTKPFSFEELLARIHVQ 115

Query: 116 YRR-------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG--- 165
            R+       LKV++   E  P+      +      EV  L  +E  +LEYLM ++G   
Sbjct: 116 LRKQNDKEPLLKVAD--LELNPV-----TKSVTRSKEVISLTAKEYMLLEYLMRHKGAII 168

Query: 166 -KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +++ + Q+FS+     ++++  N+V  ++ +LR K+        + + R LGY+++ N
Sbjct: 169 EEKMLEEQLFSS-----EQSINSNMVSVYMYRLRSKIDKNFELKLIKTHRNLGYTLNEN 222


>gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
 gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
          Length = 237

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SNN A+      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218


>gi|257066862|ref|YP_003153118.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798742|gb|ACV29397.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 219

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 4/153 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NR 125
           IR  S +P+I ++        +   D G DD + KP    E+++RV A+ RR K  + + 
Sbjct: 65  IREFSDIPIIMLTARTDEFDKVMGLDLGADDYITKPFSILELISRVKAVLRRSKKKDTDH 124

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                +R+    R  +V G    L  +E  +L   M+N G  + +      ++G +D   
Sbjct: 125 ISYKEVRLNMKKRSVKVDGVKIDLTYKEFEMLLLFMSNIGNVITRDDFLLKVWG-YDYEG 183

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E   V+ HI+ LR KL+N   +  +++ R LGY
Sbjct: 184 ETRTVDVHIASLRAKLKNAGKY--IETVRNLGY 214


>gi|167750125|ref|ZP_02422252.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702]
 gi|167656868|gb|EDS00998.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702]
 gi|291556575|emb|CBL33692.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 244

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 17/173 (9%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R  S  + +I +S        +     G DD V KP    E++ARV A+YRR+ 
Sbjct: 64  ELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAVYRRVS 123

Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +S  R          +GP  + +  R     G    + + E ++LEY M N G  + +  
Sbjct: 124 LSVARPPEDEGRTLISGPFSINTKSRIFTKNGTGIEITQVEYQLLEYFMENSGSALDRRS 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK---RFLGYSIDW 222
           I + I+G  D   ++ +V+ +I +LR K+      DP + +      GY   W
Sbjct: 184 ILTHIWG-NDYYGDDKIVDVNIRRLRMKIEE----DPSNPRYITTIWGYGYKW 231


>gi|160946207|ref|ZP_02093418.1| hypothetical protein PEPMIC_00169 [Parvimonas micra ATCC 33270]
 gi|158447730|gb|EDP24725.1| hypothetical protein PEPMIC_00169 [Parvimonas micra ATCC 33270]
          Length = 218

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S++P++ ++ +   +  ++ F S  D  + KP     +  R+ ++ +R  
Sbjct: 60  LEVLKEIRKKSKLPVLMLTAFNDEEYKINAFSSLADGYMEKPFSLPVLKVRIDSLIKRHY 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E     V       +  GE   +  +E  IL+YL+ N G  + + QI   ++  
Sbjct: 120 SGQEKFEYKDAEVNFTSYTAKYNGEDVDINAKELEILKYLLENEGHALTRAQIIDNVWKE 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            DE   + V++ +I +LRK    KLG D + + R +GY ++
Sbjct: 180 TDEIPFDRVIDVYIKELRK----KLGLDCIVTIRNVGYKLE 216


>gi|187927671|ref|YP_001898158.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|309780716|ref|ZP_07675457.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA]
 gi|187724561|gb|ACD25726.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|308920398|gb|EFP66054.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G  ++     E   W +      V+AI    + + + V 
Sbjct: 3   ILLVEDDPLLGDGIRAGLQQQGFQVDWVRDGE-AAWRELRTDAYVAAILDLGLPRMDGVD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L ++  A   VP++ ++   ++   +   D G DD + KPI   E+ AR+ A+ RR   
Sbjct: 62  VLRKVRGAGIAVPILVLTARDAIPDRVRGLDLGADDYIVKPIDLHELSARLRALVRRAHG 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L+      E     VF +GR          L  RE  +L  LM N G+ +++ Q+
Sbjct: 122 HPTEQLRARGIVLEPASRTVFCNGR-------AVALSTREFDLLHALMLNAGRVLSREQL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +Y  + + V  N VE HI  LR     KLG D + + R +GY +
Sbjct: 175 EQCLYP-WGQEVGSNSVEVHIHHLRV----KLGSDLIVTVRGVGYML 216


>gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630]
 gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13
           [Clostridium difficile]
          Length = 230

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + VP++ ++   S    +     G DD + KP    E +ARV ++ RR  V NN  
Sbjct: 67  IRKLNNVPVLMLTAKDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQSLIRRFTVFNNHT 126

Query: 127 ETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E      F         R   +      L  RE  +L +L +N+G+   K QI++ ++  
Sbjct: 127 EENITLKFKGLQIDVTLRTVLLNDNQIYLTAREFDLLYFLASNQGRVFTKEQIYTHVWN- 185

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
            + + ++  + S +SKLRKK++N KL  D + +   +GY
Sbjct: 186 NEYSYDDRNIMSFVSKLRKKIKNEKLDIDYIQTIHGIGY 224


>gi|110638548|ref|YP_678757.1| two-component response regulator [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281229|gb|ABG59415.1| two-component response regulator [Cytophaga hutchinsonii ATCC
           33406]
          Length = 225

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 2/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R  ++  +I +S+  S+   + F ++G DD ++ P +  E+ AR+ A+ RR K +
Sbjct: 63  LTDLYRKSAETGIIILSETLSIADKVQFLNAGADDCLSAPYNTEELKARILAVIRRKKFN 122

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      + V    +   V  +   L R E  +  +L+ NR   V++T+I   ++G  
Sbjct: 123 TGSSVHIANVVVDLAAQSICVWDKTVLLTRTEYDLFLFLIMNRSSTVSQTKIADYLWGDT 182

Query: 182 DEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E  E  N++ +HI  LRKKL+       + +   +GY++
Sbjct: 183 AEDKEASNLLIAHIKNLRKKLKQAKAELEIKNVYGIGYTL 222


>gi|307709571|ref|ZP_07646025.1| response regulator [Streptococcus mitis SK564]
 gi|307619702|gb|EFN98824.1| response regulator [Streptococcus mitis SK564]
          Length = 225

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA++  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKIQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +  +GF  +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222


>gi|307701723|ref|ZP_07638737.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
 gi|307612981|gb|EFN92236.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
          Length = 229

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 10/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
           M   ++D   ++D  +   G  G    G    +      +  R ++  ++  L G  G +
Sbjct: 1   MIYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTRPELVLLDIMLPGTDGIQ 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   +  R+ + +P+I ++   +    +   D G DD V KP    E+++RV A+ RR 
Sbjct: 61  ILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLRRS 120

Query: 120 KVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             S   +        G I +        V GE   L  +E ++LE LM   G   ++ Q+
Sbjct: 121 SRSTQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRDQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +I+G +    E   V+ HI  LRKKL     +  V + R +GY +
Sbjct: 181 LDSIWG-YSFHGETRTVDVHIRTLRKKLGEAAKY--VKTVRGVGYKV 224


>gi|253572356|ref|ZP_04849759.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|251838131|gb|EES66219.1| two-component system response regulator [Bacteroides sp. 1_1_6]
          Length = 229

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ 
Sbjct: 61  GFKMANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120

Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR   +   AE  P R+           +   +  E   L ++E  IL  L+ N+G+  +
Sbjct: 121 RR--TATMEAEKAPERLTYQSLVIDITKKKVSIDDEEVQLTKKEFEILLLLVQNKGRVFS 178

Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           +  I + I+   DE  V +  ++ +I++LRKK+
Sbjct: 179 REDILARIWS--DEVYVLDRTIDVNITRLRKKI 209


>gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
 gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
          Length = 237

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCKKLRDKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SNN A+      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFQNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218


>gi|218132654|ref|ZP_03461458.1| hypothetical protein BACPEC_00513 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992380|gb|EEC58383.1| hypothetical protein BACPEC_00513 [Bacteroides pectinophilus ATCC
           43243]
          Length = 230

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 14/157 (8%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ ++    ++  +   D+G DD + KP   +E+LAR+  + RR       A   P 
Sbjct: 72  KTPVLLLTAKSEVEDRVLGLDTGADDYLTKPFAMKELLARIRVMTRR------TASYAPD 125

Query: 132 RVFSDGRD-------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            +  DG          E  G    L  +E ++LE LM N+G+ V+  Q    ++G ++  
Sbjct: 126 TLDVDGMKLNRGNCMLEYNGGEVQLVNKEYQMLEMLMRNKGRLVSSEQFIEHVWG-YETD 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  NVV  +IS LR+KL        + + R LGY ++
Sbjct: 185 INVNVVWVNISNLRRKLTQINAPVEIKAVRGLGYRLE 221


>gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 237

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SNN A+      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218


>gi|167757753|ref|ZP_02429880.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
 gi|167664635|gb|EDS08765.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
          Length = 221

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +I R    +P+I ++        L  +D G DD + KP   + +LA+V A+ RR   S N
Sbjct: 65  KIAREMYNIPIIFLTAKEGEDDKLKGYDIGADDYMTKPFSPKVLLAKVNALLRR-SSSEN 123

Query: 125 RAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             ET   G + +        V G+   L  +E  +L + M N+ +  ++ Q+ + I+G +
Sbjct: 124 TPETLTVGNLTLIPTSHSVMVAGDDVDLTYKEFELLRFFMQNKNQVFSREQLLNRIWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKL 201
           D       V++HI  LR+KL
Sbjct: 183 DFEGNTRTVDTHIKTLRQKL 202


>gi|75908656|ref|YP_322952.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75702381|gb|ABA22057.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 222

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 13/213 (6%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQ 72
           IA F + G+  +GF +    +   ++     S  +  ++     G+  L++   +R   +
Sbjct: 13  IAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLPGKDGLDVLEELRGQGE 72

Query: 73  -VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---- 127
            VP+I ++    +Q  +  F++G DD + KP    E+L RV A  R+   S    E    
Sbjct: 73  NVPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSGGSQVMEEMVIK 132

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           +G I +    R  ++  +   LP RE  + E    + G+ +++ Q+   ++G +D     
Sbjct: 133 SGHIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDRVWG-YDYDPGS 191

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N+V+ ++  LRKKL N L    +++ R +GY +
Sbjct: 192 NIVDVYVGYLRKKLGNDL----IETVRGMGYRL 220


>gi|317472204|ref|ZP_07931533.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900293|gb|EFV22278.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 226

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L+L   IR     P+I ++   S Q  ++   +G DD + KP    E+LAR++A  
Sbjct: 59  GMNGLDLCVSIRDFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHL 118

Query: 117 RRLKVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR + S+N+ ++      +  +SD R   ++G    L  +E  I++ L +N G+   + +
Sbjct: 119 RREQRSHNKTKSKFSEELVIDYSD-RSLYIRGNKIELSNKEFEIIQLLSSNAGQVFDREK 177

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I+  I+G+ D   +  V++ HI K+R K 
Sbjct: 178 IYECIWGI-DGNGDSVVIKEHIRKIRLKF 205


>gi|307942343|ref|ZP_07657694.1| two component transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307774629|gb|EFO33839.1| two component transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 220

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETG 129
           +  P+I ++    +   +   D G DD + KP    E  AR  A+ RR    S NR   G
Sbjct: 71  NATPVIVLTARSEVSDRVGVLDLGADDYIVKPFDFSEFEARCRAVLRRKGGASGNRISRG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            ++  +     +V GE   L  RE R+ E  +   G+  +K+++   ++  +DE V EN 
Sbjct: 131 DLKFDTLAGTLQVAGEQIQLRNRELRLFEIFINAPGQIFSKSKLVDRLFS-YDEDVSENA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E ++ +LRK L        + + R LGY ++
Sbjct: 190 IEVYVGRLRKHLSASAA--NIVTVRGLGYKLE 219


>gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 82/161 (50%), Gaps = 2/161 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I +    +P++ ++    ++  +   + G DD + KP    E+LARV A+ RR +  
Sbjct: 64  LEQIRKGGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALLRRSEGR 123

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-L 180
           ++   +   +R+ +  R     GE   L ++E  ILE+L+ N+ + V++  +   ++G  
Sbjct: 124 HSAILDAKGLRLDTVSRKVTKDGEPIDLTQKEFLILEFLLYNKNRVVSRFSLAEHVWGDA 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD     N ++ HI  LR+KL +      + + R +GY I+
Sbjct: 184 FDPFTMSNFIDVHIKNLRRKLGDAGNDKIIQTVRSVGYMIE 224


>gi|225573645|ref|ZP_03782400.1| hypothetical protein RUMHYD_01839 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039013|gb|EEG49259.1| hypothetical protein RUMHYD_01839 [Blautia hydrogenotrophica DSM
           10507]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 4/139 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SN 123
           IR +  +P+I IS   + Q  +D    G DD + KP    E+LAR+ +  RR+ +   S 
Sbjct: 67  IRENFLMPVIVISAKETTQNKIDLLRQGADDYITKPFDMEEVLARIESNLRRVGIWEKSK 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +      + +  +     +QG    L  +E  +L  LM    K  +K  +F +++ + + 
Sbjct: 127 DILRCEDLLLDLERHTATLQGCELVLTAKEFALLRLLMEFPDKIFSKANLFQSVWNM-EY 185

Query: 184 AVEENVVESHISKLRKKLR 202
             E+N +  HIS LR KLR
Sbjct: 186 ISEDNTLNVHISNLRSKLR 204


>gi|261408286|ref|YP_003244527.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284749|gb|ACX66720.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 239

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR H+  P+I IS   +    L     G DD + KP +  E++AR+ AI RR K
Sbjct: 64  FELCTEIRKHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQK 123

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  N  +       G +    +     V+G+      +E  +L +   +        Q++
Sbjct: 124 IMENELQQNTAYDYGYLSFHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTAQLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G  D   EE  V  HISKLRKK+
Sbjct: 184 ELVWG-NDVFGEEKTVTIHISKLRKKI 209


>gi|56965403|ref|YP_177135.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911647|dbj|BAD66174.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 238

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR ++  P+I +S   +    L     G DD + KP +  E++AR+ AI RR K
Sbjct: 64  FELCTEIRRNTDTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQK 123

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +   R+E  P+        + +     VQ +      +E  +L +   N  +     Q++
Sbjct: 124 MY-ERSEKKPVYDYGYFAFYPESAILMVQNQTVECTAKELELLHFFCENPNRIFTTAQLY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G  D   EE  V  HISKLRKKL
Sbjct: 183 ERVWG-NDVFGEEKTVTIHISKLRKKL 208


>gi|311069979|ref|YP_003974902.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870496|gb|ADP33971.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 237

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR  S VP+I IS        +   + G DD + KP H   +LA++ ++ RR      
Sbjct: 65  RQIRTISNVPIIFISARTDELNQVMAIEHGGDDYITKPFHLEVVLAKIKSVLRRTYGEYS 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +   +   E G + ++ D  + E +       ++E ++L   +    K V + ++  A
Sbjct: 125 PSISQESKVVEIGELYIYPDKYEAEWKNNRMSFSQKEFQLLSIFVKEHKKIVTRDELLEA 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   D  V++N +  ++++LRKKL N    + + + R  GY  + N
Sbjct: 185 LWDEID-FVDDNTLTVNVNRLRKKLENAGLQEAITTIRGKGYKFEIN 230


>gi|295693549|ref|YP_003602159.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031655|emb|CBL51134.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 239

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 22/223 (9%)

Query: 18  LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP-------- 64
           L  +D  S+  F    LEFE++    A +   A++ F   K   +L    LP        
Sbjct: 9   LLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDFFTQEKPTLILLDWMLPVYDGMTVL 68

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           R IR  S VP+I ++   S        D G+DD + KP    E+LAR+  + RRL+    
Sbjct: 69  RRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEKMRQ 128

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V +   E GP++V     +     E   L  +E  ++  LM +  +  ++ ++   +
Sbjct: 129 QNDVPDTSLEFGPLKVDLLKHEFYCDNEKIYLTPKEFALITELMRDPEQVKSRDELLDTV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + N V+ +I  +R K+ N      + + R LGY +
Sbjct: 189 WG-YDFVGQTNTVDVYIRTIRNKIGNPYK-KIIKTMRGLGYCL 229


>gi|328944343|ref|ZP_08241807.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
 gi|327491262|gb|EGF23037.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
          Length = 234

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 2/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           R+   +P++ ++   S Q  +D  D+G DD + KP    E+LAR+ A+ RR   V   + 
Sbjct: 79  RSGDSMPILILTARTSTQDKVDGLDAGADDYLTKPFEAPELLARLRALTRRQGDVIIEQM 138

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +     +     D   +     L  +E  +L+ L++   + V+K  + + ++G   +A  
Sbjct: 139 KFADFSLDLSTHDLMCKNHSVHLSGKEFEVLKMLLSAPSRVVSKQDLLTYVWGTTADA-S 197

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           EN VE+++S LRKKL        + + R LGY ++
Sbjct: 198 ENSVEAYVSFLRKKLAYVHSKVQITTLRMLGYRLE 232


>gi|238785583|ref|ZP_04629563.1| Two-component system response regulator [Yersinia bercovieri ATCC
           43970]
 gi|238713518|gb|EEQ05550.1| Two-component system response regulator [Yersinia bercovieri ATCC
           43970]
          Length = 227

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 18/211 (8%)

Query: 24  VSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80
           +S EGFN+   L  +E +  +   D +A+   ++      +++ R +R  S++P+I ++ 
Sbjct: 20  LSGEGFNAELVLTGKEGIDGALSGDYTALILDIMLPDMSGIDVLRQVRKKSRLPIIMLTA 79

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-------GPIRV 133
                  +   + G DD + KP + RE++AR+ A+ RR     + + T       G + +
Sbjct: 80  KGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDEHPDLSSTDDSVITHGDLTL 139

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
               R  E QG+ F L   E  +LE L+ +  + V K ++     G   EA + + V+ H
Sbjct: 140 NPSTRSSEWQGKTFDLTASEFNLLELLLRSPDRVVTKDELSDKGLGRPREAYDRS-VDVH 198

Query: 194 ISKLRKKLR----NKLGFDPVDSKRFLGYSI 220
           IS +R+KL     N L  + V   R +GY I
Sbjct: 199 ISNIRQKLAALPGNTLNIETV---RSIGYRI 226


>gi|150389689|ref|YP_001319738.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949551|gb|ABR48079.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR +S +P+I ++       +L  ++ G DD + KP   R ++ +V       K S
Sbjct: 63  VCRRIRKNSNIPIIMLTARSDEDDSLLGYELGADDYLIKPYSPRVLMVKVKRFLE--KYS 120

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N  E       I +    R   V G    L   E  +L YLM NRG  + + Q+ + I+
Sbjct: 121 GNMDEMLTSASGIVINMGARLVSVDGNTISLTHTEFEMLAYLMQNRGIVINREQLIAKIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK 204
           G +D   +E  V SHI  LR KL +K
Sbjct: 181 G-YDFYGDEKTVNSHIRNLRAKLGSK 205


>gi|295106491|emb|CBL04034.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 226

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--PIRVFSDGRDPEVQGEVFPLPR 151
           G DD + KP    E++ RV AI RR          G   + +  + R   V G    L  
Sbjct: 93  GADDYLAKPFDRDELVLRVEAIIRRSMGVRTLDAFGFRGLTLDPNTRRAAVDGAPVVLKG 152

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           ++  +LEYL+++ G+ V+KTQ+F  ++G  ++    NVVE ++S LRK L+   G+D
Sbjct: 153 KQYDVLEYLVSHEGQLVSKTQLFDRVWGFMNDT-SSNVVEVYVSALRKVLKGH-GYD 207


>gi|284046158|ref|YP_003396498.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950379|gb|ADB53123.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 2/159 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I R   ++P++ +S   ++   +   D G  D V KP    E+ ARV A  RR +  
Sbjct: 63  LSSIRRVKPELPVVMLSARATVDDRVAGLDGGATDYVTKPFSFDELAARVRAHLRRPRQR 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +        I +   GR+   +G    L  RE  +L Y + +  + +++ QI SA++G +
Sbjct: 123 DATTLSAAGIELDLLGRNVRREGVELRLSAREFDLLAYFLRHPDQALSRQQILSAVWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     NVVE +I  LR+KL       P+D+ R +GY +
Sbjct: 182 DFDPGTNVVEVYIRYLRRKLELPGRPTPIDTLRSVGYRL 220


>gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
 gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 228

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 8/191 (4%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           E L+++  +D   I   L+       E+ R ++      ++ ++   S+   +   D G 
Sbjct: 37  EGLETALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGA 96

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPL 149
           DD + KP    E+LAR+ AI+RR  + + + +T    ++ D       R      +   L
Sbjct: 97  DDYIVKPFAIEELLARIRAIFRRQDIESEK-KTPSQGIYRDLVLNPQNRSVNRGDDEISL 155

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            +RE  +L  LM N  + + + ++ S ++  +DEAVE NVV+ +I  LR K+        
Sbjct: 156 TKREYDLLSILMTNMNRVMTREELLSNVWK-YDEAVETNVVDVYIRYLRGKIDIPGKESY 214

Query: 210 VDSKRFLGYSI 220
           + + R +GY I
Sbjct: 215 IQTVRGMGYVI 225


>gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 233

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     V
Sbjct: 73  IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSV 132

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N++  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 133 EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIYEAVWK 192

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 193 EVFYKS--DNTVMVHITKIRDKI 213


>gi|225569383|ref|ZP_03778408.1| hypothetical protein CLOHYLEM_05467 [Clostridium hylemonae DSM
           15053]
 gi|225161591|gb|EEG74210.1| hypothetical protein CLOHYLEM_05467 [Clostridium hylemonae DSM
           15053]
          Length = 224

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D + +++  +      G+   GF   +  E+L++ A E    I   ++  GE  
Sbjct: 1   MIFCVEDDSNIRELVVYTLESTGMKARGFE--DGREFLEALALETPELILLDIMLPGEDG 58

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL + +++     ++P+I ++   +    +   DSG DD V KP    E+++RV A+ R
Sbjct: 59  MELLKRLKSSVKTREIPVIMVTAKGAEYDKVMGLDSGADDYVTKPFGMMELVSRVKAVLR 118

Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R    + + E     G I +     +    G    L  +E  +L+ LM N    + + Q+
Sbjct: 119 RTAKDDYKREDKIALGNIEIDIRKHEVRASGSTVNLTLKEYELLKRLMRNPNIVLTRDQL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +D   E   V+ H+  LR+KL    G + +++ R +GY +
Sbjct: 179 LEDIWG-YDFDGETRTVDVHVRTLRQKL-GACG-EKIETVRGVGYKM 222


>gi|149276735|ref|ZP_01882878.1| two-component response regulator [Pedobacter sp. BAL39]
 gi|149232404|gb|EDM37780.1| two-component response regulator [Pedobacter sp. BAL39]
          Length = 223

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSD 136
           IS   S+   ++    G DD + KP H  E+ AR+ AI RR   + N++     I + + 
Sbjct: 78  ISARDSIDQRIEGLSLGADDYLVKPFHLSELYARITAIVRRRSFNGNDQVVFNEIEIDTT 137

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHIS 195
            ++ ++ G +  L ++E  IL Y + N+ K V+K+     I+G   D A   + + +HI 
Sbjct: 138 AKEVKINGILINLTKKEFDILLYFVTNKSKVVSKSAAAVHIWGEDADMADSFDFIYTHIK 197

Query: 196 KLRKKLRNKLGFDPVDSKRFLGY 218
            +RKKL +    D   S   +GY
Sbjct: 198 NIRKKLTDAGCKDYFQSVYGVGY 220


>gi|113866325|ref|YP_724814.1| DNA-binding response regulator CreB [Ralstonia eutropha H16]
 gi|113525101|emb|CAJ91446.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 232

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 11/168 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S  P++ ++        +   + G DD V KP   RE+ ARV AI RR + 
Sbjct: 67  EVCRTLRTFSNAPVVFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126

Query: 122 SN-NRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                A++  +  F+   DG     +G    L R E  +L +L+ + G+  ++ Q+   +
Sbjct: 127 GGATAAKSDEVAGFTHDKDGARLAYRGRWLELTRYEYLLLAWLVTHPGRIYSRAQLMECV 186

Query: 178 YGLFDEAVE--ENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
           +   ++A++  +  V++HI  LR KLR     G + + + R +GYS++
Sbjct: 187 W---EDALDTSDRTVDTHIKTLRAKLREASADGAERIRTHRGMGYSLE 231


>gi|304406308|ref|ZP_07387965.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344892|gb|EFM10729.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 7/151 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-I 115
           G   LE+ R IRA   VP++ +S        +  F  G DD V KP    E++AR  A +
Sbjct: 57  GADGLEVCRSIRAQLDVPILIVSARDEEIDKIRGFGLGADDFVTKPFSPNELIARAKAHL 116

Query: 116 YRRLKVSNNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            R  + +N  AE   IR+         R   V G    L  RE  +L ++ A+  +  +K
Sbjct: 117 SRYERFANRTAEPEQIRIRELTIDKTARRVYVHGNEVVLTTREFDVLAFMAAHPNRVFSK 176

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           T++F  ++G FD A +   V  HI ++R+K+
Sbjct: 177 TELFERLWG-FDSAGDIATVAVHIRRVREKI 206


>gi|238752020|ref|ZP_04613504.1| Two-component system response regulator [Yersinia rohdei ATCC
           43380]
 gi|238709720|gb|EEQ01954.1| Two-component system response regulator [Yersinia rohdei ATCC
           43380]
          Length = 239

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 23/233 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGE 58
            +L+DD     D  +     + +S EGFN+   L  +E + ++   D SA+   ++    
Sbjct: 15  ILLVDD-----DAELGTMLREYLSGEGFNAELVLTGKEGITAALSGDYSALILDIMLPDM 69

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +++ R +R +S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR
Sbjct: 70  SGIDVLRQVRQNSRIPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVMRR 129

Query: 119 ------LKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                 L  +++ A T G + +    R    QG+ F L   E  +LE L+ +  + V K 
Sbjct: 130 FDERPDLSSTDDSAITLGNLTLSPSTRSSLWQGKPFDLTASEFNLLELLLRSPERVVTKD 189

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR----NKLGFDPVDSKRFLGYSI 220
           ++     G   EA + + V+ HIS +R+KL     N+L  + V   R +GY I
Sbjct: 190 ELSDKGLGRPREAYDRS-VDVHISNIRQKLAALPDNRLNIETV---RSIGYRI 238


>gi|228911694|ref|ZP_04075468.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228847923|gb|EEM92803.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 223

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+  ++   S    L   + G DD + KP +   +LARV  I RR   +
Sbjct: 63  ICREIRKTSDVPIFMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +T  I ++ D            Q +   L + E +IL  L+ NRG  V +  +   
Sbjct: 120 SGDFKTNHILIYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           ++   D  V+++ +  +I++LRKKL  +LG  +P+ ++R LGY
Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLE-ELGIENPIATRRSLGY 220


>gi|163856366|ref|YP_001630664.1| two-component response regulatory protein [Bordetella petrii DSM
           12804]
 gi|163260094|emb|CAP42395.1| two-component response regulatory protein [Bordetella petrii]
          Length = 229

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119

Query: 120 KVSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                        VF   GR   V  +   L  RE  +LE L+   G+ V+KTQ+   + 
Sbjct: 120 AGGGATLLRHGRLVFDQTGRVALVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKKL    G   + + R LGY ++
Sbjct: 180 E-WGEEVSTNAIEVYVHRLRKKLEPS-GVKII-TVRGLGYCLE 219


>gi|156936234|ref|YP_001440151.1| transcriptional regulatory protein YedW [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534488|gb|ABU79314.1| hypothetical protein ESA_04133 [Cronobacter sakazakii ATCC BAA-894]
          Length = 226

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R     P++ ++   ++   +   + G DD + KP    E+LARV A  RR   +  
Sbjct: 64  RALRTAKATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHAPAAA 123

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183
             +   + + +        GE   L R+E  +L  L +  G+ + +T I S ++G+ FD 
Sbjct: 124 TLQVADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWGINFDS 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E NVV+  I +LRKK+ +      +++ R +GY ++
Sbjct: 184 --ETNVVDVAIRRLRKKIDDPFPLKLIETVRGMGYRLN 219


>gi|118616126|ref|YP_904458.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium ulcerans Agy99]
 gi|118568236|gb|ABL02987.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium ulcerans Agy99]
          Length = 236

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 15/207 (7%)

Query: 23  GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75
           G+ L GF    +++  E L+S+     +  +A ++     VL+   ++ A     + VP+
Sbjct: 29  GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 85

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPI 131
             +S   S+   +   ++G DD + KP    E++ARV A+ RR   +   +      GP+
Sbjct: 86  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSEIITVGPL 145

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+
Sbjct: 146 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 204

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I  LR+KL    G   + + R +G+
Sbjct: 205 VFIGYLRRKLEANGGPRLLHTVRGVGF 231


>gi|332638553|ref|ZP_08417416.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 229

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R     P+I ++   S+   +   D G DD V KP    E+LARV A+ RR+ 
Sbjct: 61  LEVARRLREVKNTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRRIN 120

Query: 121 VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +      T         + V  + R      ++  L +RE  +L  LM N     ++ ++
Sbjct: 121 IETEEHSTHQSVVRYRDLTVEKENRIARRGNDIINLTKREYELLLILMENINVVQSREEL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G +D  +E NVV+ +I  LR K+
Sbjct: 181 LKKVWG-YDSQIETNVVDVYIRYLRNKI 207


>gi|313888528|ref|ZP_07822195.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845557|gb|EFR32951.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 223

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 5/157 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLKVSNNR 125
           I+    +P++ +S        L  F+ G+DD V KP   +E++AR+  I  R  KV  N+
Sbjct: 67  IKKIKNIPVLMLSARSEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNNKVEENK 126

Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E   +++  DGR   V  E+  L  +E  +L Y++ N+   +++ ++ + ++G +D  
Sbjct: 127 TMEFEGLKIDLDGRVVFVDDEMIDLTPKEYDLLVYMVKNKNIALSRDKLLNQVWG-YDFY 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E+  V++HI  LR  ++    F  + + R +GY  D
Sbjct: 186 GEDRTVDTHIKMLRNSIKEYRKF--IITVRGVGYKFD 220


>gi|153811600|ref|ZP_01964268.1| hypothetical protein RUMOBE_01992 [Ruminococcus obeum ATCC 29174]
 gi|149832341|gb|EDM87426.1| hypothetical protein RUMOBE_01992 [Ruminococcus obeum ATCC 29174]
          Length = 222

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 14/162 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           IR  SQVP+I IS        +     G DD + KP     + A++ AI RR        
Sbjct: 67  IRRISQVPIIFISSASDNMNMVMAMSRGADDFIAKPFDLDVLTAKIQAILRRTYSFGTPG 126

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + +  A   P R           G    L + E RILE L+ + GK V++  I + ++
Sbjct: 127 SVLEHKGAVLNPSRC-----TLTWNGHDIDLTKNELRILEILLEHAGKAVSRDAIMTKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D  V++N +  +I++LRKKL  +   D + +K+ LGY +
Sbjct: 182 E-SDSFVDDNTLTVNITRLRKKLEGEGLKDFIITKKGLGYMV 222


>gi|119503167|ref|ZP_01625251.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
 gi|119460813|gb|EAW41904.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
          Length = 233

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           R D+  ++  L G G  +  L RI RA     +P+I ++   +    +   D G DD + 
Sbjct: 47  RPDIVLLDWMLPG-GSGIELLRRIKRAEMTQDLPVIMLTAKAAEHNVIQGLDVGADDYIT 105

Query: 101 KPIHHREILARVAAIYRRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           KP   RE+LAR+ A+ RR K S++R       + +  D R   V  E   L   E  +L 
Sbjct: 106 KPFALRELLARIKALLRRAKSSDDRNLLVVRDLTIDIDSRRAFVGEEALQLGPTEFNLLL 165

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + M++  +   ++Q+   ++G  +  VEE  V+ HI +LR  L
Sbjct: 166 FFMSHPERAYTRSQLLDRVWG-ANIYVEERTVDVHIRRLRAAL 207


>gi|108803040|ref|YP_642977.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764283|gb|ABG03165.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 227

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 22/212 (10%)

Query: 23  GVSLEGFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGI 78
           G+S +G++ L  E+    L+ +  EDV  +   ++  G    E+ R +R     +P++ +
Sbjct: 19  GLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGREVLRRLRLRRPGLPVLML 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGP 130
           +    ++T +   D+G DD + KP    E+LAR+ A+ RR        L+  + + +   
Sbjct: 79  TARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRADQPESTALRAGDLKLDLLS 138

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
            RV+  GR  E       L  RE  +LEYLM +  + +++ QI SA++   FD     NV
Sbjct: 139 RRVWRAGRQVE-------LSSREFALLEYLMRHPRQVLSRQQILSAVWDYAFDPG--SNV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           V+ ++  LR+KL        + + R  GY  D
Sbjct: 190 VDVYVRYLRRKLDRPGEPSLITTVRGAGYRFD 221


>gi|331084796|ref|ZP_08333884.1| hypothetical protein HMPREF0987_00187 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410890|gb|EGG90312.1| hypothetical protein HMPREF0987_00187 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 223

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 3/152 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           + + Q+P++ +S    L +    F  G+DD + KP+   E+  RV A+ RR  +   R  
Sbjct: 69  QVNRQIPILFMSAKDDLPSKRKGFLVGIDDYMVKPVELAELEMRVRALLRRANIEMERKL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               + + +DG    + GE   +  RE  IL  L++   K   + Q+    +G+ D    
Sbjct: 129 VVANLELDADGMTASIDGEEISITTREFHILYKLLSYPKKTFTRAQLMDEFWGI-DSGTS 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              V+ +I+KLR K     GF+ + + R LGY
Sbjct: 188 LRAVDVYITKLRDKFSACNGFE-IKTVRGLGY 218


>gi|229158434|ref|ZP_04286496.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228625041|gb|EEK81806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 229

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL YLM N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|226310694|ref|YP_002770588.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093642|dbj|BAH42084.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 230

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +L+DD        I  F + G+  EGF  L  ++ + +       +  V  ++  +   
Sbjct: 12  ILLVDDEPT-----ILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVMM--P 64

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-I 115
           G    E+ R+++    V  I ++    ++  +     G DD + KP    E+LAR+ A I
Sbjct: 65  GMDGFEVCRMLKKIQNVATIMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARI 124

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   ++   GP ++    ++    G +  L   E  +L+YL+ N G  ++K  I  
Sbjct: 125 RNHYPHLLSKVHLGPFQIDDRRKEITYDGTLLELSPTEYSLLKYLVTNHGLVLSKPMILD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G +D   EEN+VE +I  LR KL ++     + + R  GY +D+
Sbjct: 185 NVWG-YDFGGEENIVEVYIRSLRDKLNDR-QHRIIRTLRGAGYRVDF 229


>gi|254380481|ref|ZP_04995847.1| turgor pressure regulator [Streptomyces sp. Mg1]
 gi|194339392|gb|EDX20358.1| turgor pressure regulator [Streptomyces sp. Mg1]
          Length = 229

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQVP++ +S     +  +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 62  IEVIKQLRGWSQVPVLVVSARHGSEEKIQALDAGADDYITKPFSMDELMARLGAVIRRTP 121

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A      ET    V    R    +G+   L   E  +LE L+ NRG+ V++ ++ 
Sbjct: 122 THEPAAADEAVVETEEFTVDLLARKARRRGKSIRLTPTEWHLLEVLIRNRGRLVSQRRLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G      + N +  +++ LR+KL
Sbjct: 182 QEVWG-SSYGTQTNYLRVYMAHLRRKL 207


>gi|21233316|ref|NP_639233.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770278|ref|YP_245040.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115147|gb|AAM43115.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575610|gb|AAY51020.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 221

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  L + R +R H    P+I ++    L   +   D+G DD + KP    E++ARV AI
Sbjct: 56  GDSGLTVIRYMRGHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARVRAI 115

Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            RR   S  R       G + V    R     G+   L   E R+L  LM   G+ V K 
Sbjct: 116 ARR---SQGRVVPLLTQGEVSVDPSSRKVTRNGKWVALSAHEYRLLLALMERAGRVVTKD 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           Q+   +YG   E    N++  ++ +LR+KL +++
Sbjct: 173 QLEEGVYGGPSEG-GSNMIAVYVHQLRRKLGDEV 205


>gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01]
 gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01]
          Length = 224

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S VP++ ++    ++  ++  D+G DD + KP    E+LARV A  RR+ 
Sbjct: 63  IEVAKRIRKTSNVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRV- 121

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + A TG IRV       +GR+    G    L  +E  +LE L  N GK  ++ +I  
Sbjct: 122 ---SPAITGEIRVADLIINLEGREVFRSGRRIELSNKEFELLELLAKNPGKVFSRYEIEE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NVV+ +I  LRKKL        + + R +GY +
Sbjct: 179 KVWPGYQGG--SNVVDVYIGYLRKKLEAAGERRLIHTVRGVGYVL 221


>gi|254788364|ref|YP_003075793.1| phosphate regulon transcriptional regulator PhoB [Teredinibacter
           turnerae T7901]
 gi|237687065|gb|ACR14329.1| phosphate regulon transcriptional regulatory protein PhoB
           [Teredinibacter turnerae T7901]
          Length = 235

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 109/226 (48%), Gaps = 15/226 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V+ D+RA+     +AL   D   LE  ++ E  + +  + R D+  ++  +   G   
Sbjct: 6   ILVVDDERAIRDMLRVALEMADYAVLEAADAQEAHQIVVDT-RPDLILLDWMM--PGVSG 62

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E  R +++     ++P+I ++        +   + G DD + KP   RE++AR+ A+ R
Sbjct: 63  IEFARRLKSQEVTREIPIIMLTAKGEEDNKIQGLEIGADDYITKPFSPRELVARLKAVLR 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R   S++ +   PI V +   DP      + G    L   E R+LE+ + ++ +  ++ Q
Sbjct: 123 R---SDSLSSGDPITVENLCLDPTSHRVTIAGMPVQLGPTEYRLLEFFLTHQERVYSRNQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   ++G  +  VEE  V+ HI +LRK L+ +     V + R  GY
Sbjct: 180 LLDYVWG-GNVYVEERTVDVHIRRLRKALKLENHDRLVQTVRGAGY 224


>gi|227111566|ref|ZP_03825222.1| DNA-binding transcriptional regulator PhoP [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 229

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++  +  +  ++       D++ ++  L    E  +
Sbjct: 3   ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGL--PDEDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  R H  ++P++ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIRRWRTHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    R+  +      L   E  I+E L+ N+GK V+K  +   +Y 
Sbjct: 121 GLASQVISLPPFEIDLSRREMMIHSSPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK++     D + + R  GY  D
Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQAEAPDVITTVRGQGYRFD 221


>gi|239630540|ref|ZP_04673571.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526823|gb|EEQ65824.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 233

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  +QVP+I ++    +   +     G DD + KP    E++ARV    R     +N
Sbjct: 68  RKIRQSNQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALR-----HN 122

Query: 125 RAETGPIRVFS------DGRDPEVQ-GEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    P  +F       D  +  VQ GEV  PL +RE  +L  L+A++ +  ++  +  A
Sbjct: 123 RQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDA 182

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
           ++G  FD   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 183 VWGTDFDG--QPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|116490563|ref|YP_810107.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|116091288|gb|ABJ56442.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
          Length = 228

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 24/214 (11%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           YI L   DG    G +  E     Q+S R +V  ++ +++ K + +  L RI + +SQV 
Sbjct: 28  YIVLTASDGEM--GLSVFE-----QNSNRINVVLLD-WMLPKRDGLEVLRRIRKLNSQVS 79

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRA 126
           +I ++    +   +   DSG DD + KP    E+LAR+    R          +VSN   
Sbjct: 80  IILMTAKSDIGDKVAALDSGADDYITKPFEIEELLARLRVTIRHQNKPRPKLYQVSNLVL 139

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +    RV  D       G+V  L +RE ++L YL+ N  K + +  +   ++G+ D   +
Sbjct: 140 DLDAHRVTRD-------GQVIDLTQREFQLLTYLIENADKTLTRDDLLDNVWGV-DFNGQ 191

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N  + +I  LR+K+ +      + + R +GY +
Sbjct: 192 YNTADVYIRYLRQKIDDHFYPKLIHTVRSVGYVL 225


>gi|325262523|ref|ZP_08129260.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           D5]
 gi|324032355|gb|EGB93633.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           D5]
          Length = 230

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 6/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ + +R  S  P+I +S     Q  +   D+G DD V KP +  E++AR+  A+ +R 
Sbjct: 64  LEVVKNVRELSSTPIIVVSARQEEQEKIQALDAGADDYVTKPFYMGELMARIRVAMRKRE 123

Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +++   A+       + V    R   V  E   L   E +IL  L+ANRGK +    I  
Sbjct: 124 RMAPESAQEMFRQDYLTVDYTKRSVLVDNEEIHLTPIEYKILTLLIANRGKVLTHNYILK 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            I+G + E VE   +   ++ LR+K+
Sbjct: 184 EIWG-YGEGVEAGTLRVFMATLRRKI 208


>gi|312885159|ref|ZP_07744839.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367172|gb|EFP94744.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 219

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P+I +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +    I 
Sbjct: 73  TPVIILSARDTLTQRIEGLNAGADDYLTKPFEMPELIARIRAQLRR--ASGNASPVMQIG 130

Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
             S D R  +V  QG+   L   E +++ Y M N  K +++T++   IY   FD   + N
Sbjct: 131 NLSLDTRSSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR--DSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E  + ++RKK+  K+    + + R LGY ++
Sbjct: 189 TIEVFVGRIRKKIAPKV----IKTVRGLGYQLN 217


>gi|257484069|ref|ZP_05638110.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331008186|gb|EGH88243.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 227

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ R +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 63  GRDGMDICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   ++     G ++V          G    L   E R+L     + G+  ++  +   
Sbjct: 123 RRTSSTDPHTSKG-LQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SHI  LR+KL     G DP+ S   +GY ++ 
Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227


>gi|242239495|ref|YP_002987676.1| DNA-binding transcriptional regulator PhoP [Dickeya dadantii
           Ech703]
 gi|242131552|gb|ACS85854.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 223

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 2/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR   +++      P
Sbjct: 72  KLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVMARIQALMRRNSGLASQVISLPP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
             V    R+  V G    L   E  I+E L+ N GK V+K  +   +Y    E  E + +
Sbjct: 132 FEVDLSRRELMVHGAPVKLTAFEYTIIETLIRNIGKVVSKESLMLQLYP-DAELRESHTI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  + +LRKKL+     + + + R  GY  D
Sbjct: 191 DVLMGRLRKKLQAANTNEVITTVRGQGYRFD 221


>gi|237811046|ref|YP_002895497.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|237502846|gb|ACQ95164.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
          Length = 269

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 109 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 167

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 168 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 225

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 226 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 265


>gi|300774744|ref|ZP_07084607.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506559|gb|EFK37694.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 230

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 83/169 (49%), Gaps = 4/169 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +L   +  +  S + +I   +  +L   ++  + G DD + KP H  E+ AR+ A
Sbjct: 57  GNGLNILNYIKTEKISSGILIISAKN--ALDDKINGLERGADDYITKPFHLPELHARLRA 114

Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +YRR K+   +  +   I + +D  +  +      + ++E  +L Y + N+ + ++K  I
Sbjct: 115 VYRRKKMEGYSEVKFNEIILNTDTYEVIINETRLEVTQKEFELLLYFLVNKNRVLSKQSI 174

Query: 174 FSAIYGLFDEAVEE-NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++G + + +   + V  H+  LRKK+    G D +++   LGY  +
Sbjct: 175 ANHLWGDYTDNLSNFDFVYQHVKNLRKKIGAAQGKDYIETIYGLGYKFN 223


>gi|169632976|ref|YP_001706712.1| putative two-component response regulator [Acinetobacter baumannii
           SDF]
 gi|169151768|emb|CAP00583.1| putative two-component response regulator [Acinetobacter baumannii]
          Length = 220

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GEKVL   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+    
Sbjct: 59  GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRTQL 116

Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R+  +S     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  
Sbjct: 117 RKQTLSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A+Y  + E +E N +E  I +LRK    K+G   + + R LGY +
Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216


>gi|167750447|ref|ZP_02422574.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
 gi|167656598|gb|EDS00728.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
          Length = 255

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 23/192 (11%)

Query: 33  EFEEWLQSSAREDVSAIEAFLIGKGEKV------LELPRI--------IRAHSQVPLIGI 78
           E+ E+   +  E V  ++A  + K +        + +PR+        IR     P++ +
Sbjct: 51  EYAEYEGHTVYEAVDGMQAVDMAKEQDFDIIIMDVMMPRLDGFSACKEIRKFKNTPILML 110

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN----NRAETGPIRVF 134
           S        L  F+ GVDD V KP   +E+LAR+ AI +R K  N       +   + + 
Sbjct: 111 SARTEEYDKLFGFEMGVDDYVVKPFSPKEVLARINAIIKRNKSGNEPVGETVKFEGLEIN 170

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
              RD  + GE   L  +E  +L YL+ N+   + + ++   ++G +D   ++  +++HI
Sbjct: 171 FTARDVFIDGEKANLTPKEYDLLFYLVKNKNIALTRNKLLEEVWG-YDFFGDDRTIDTHI 229

Query: 195 SKLRKKLRNKLG 206
               K LRN LG
Sbjct: 230 ----KMLRNNLG 237


>gi|330960618|gb|EGH60878.1| DNA-binding response regulator [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 245

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE    + R +R     P++ ++        +   D+G DD V KP+H R +LAR+
Sbjct: 57  LMLPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARI 116

Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR +          R   GP+ V +  R+  ++ +   L   E  +L  L+AN G+
Sbjct: 117 KALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 176

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            +++ +IF+A+ G+  +  ++  ++  IS++R     K+G DP+  +
Sbjct: 177 TLSREEIFTALRGIGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 218


>gi|289549393|ref|YP_003470297.1| response regulator [Staphylococcus lugdunensis HKU09-01]
 gi|315659938|ref|ZP_07912797.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289178925|gb|ADC86170.1| response regulator [Staphylococcus lugdunensis HKU09-01]
 gi|315495226|gb|EFU83562.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 221

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNR 125
           + S +P+I ++   +L T L  F  G  D + KP +  E++ R+  I  +      + N 
Sbjct: 67  SQSNIPIIFLTAKDNLDTRLKCFSLGAKDYIAKPFYMEELIVRIENILTQNNSYSKNKNI 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            +T  + +  D         +  + R E  I++ L  N     +K QI+ +I   F++  
Sbjct: 127 KKTKDLIINYDTFSVYAGDHLLDITRTEFEIIKLLSLNSNFYFSKDQIYDSIN--FNKIG 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              VV  HI K+RKKL     F+ +D+K  +GY
Sbjct: 185 NTQVVSEHIRKIRKKLHQYSDFEYIDTKWGVGY 217


>gi|228990402|ref|ZP_04150367.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228768928|gb|EEM17526.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 210

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR      + 
Sbjct: 55  IRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQE 114

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           E    GPI +    R  E+ GE   L  +E  +L +L  + G+  ++ Q+   ++G +D 
Sbjct: 115 EELQFGPIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHSGQVFSREQLLEKVWG-YDY 173

Query: 184 AVEENVVESHISKLRKKL 201
           A     V++H+  +R KL
Sbjct: 174 AGSTRTVDTHVKTMRLKL 191


>gi|77461417|ref|YP_350924.1| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf0-1]
 gi|77385420|gb|ABA76933.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 226

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 19/227 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA------REDVSAIEAFLIG 55
            ++++D A + D  I  F   G   EGF +     WL   A      R+  + +    IG
Sbjct: 4   ILIVEDEAAIADTLI--FALQG---EGFTT----TWLSLGAAALEHQRQTPADLIILDIG 54

Query: 56  KGE-KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
             +    E  + +R  S+VP++ +S   +    +   + G DD V KP   RE+ ARV A
Sbjct: 55  LPDISGFETCKQLRRFSEVPVLFLSARNAEIDRVVGLEIGADDYVVKPFSPREVAARVRA 114

Query: 115 IYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           I +R+       A +   R+  +      +G+   L R E R+L+ L+    +  ++ Q+
Sbjct: 115 ILKRMAPRPVIEASSALFRIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             A+ G+  +A  E  ++SHI  +R KLR  +   +P+ + R LGYS
Sbjct: 175 LDAL-GVAADAGYERSIDSHIKSVRAKLRLVRAEAEPIQTHRGLGYS 220


>gi|332308798|ref|YP_004436648.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176127|gb|AEE25380.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 223

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 107/222 (48%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D  ++ D      G+  + +    +L       +    D+  ++  L  G G   
Sbjct: 3   ILLVEDDPIIADAICVYLGNAIMQVTHAATLSEAIHYVAVCSFDICLLDISLPDGSG--- 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL +++R     +P+I ++   +++  +   + G DD V KP    E++AR+ ++YRR 
Sbjct: 60  LELIKVVRKKKLALPIILLTAKDAIEDKVQGLNDGADDYVTKPFDFEELMARIKSVYRRF 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N+  + G ++  S+ +  ++  +   L   E ++L   ++N  + + +  +   +Y
Sbjct: 120 THQQNSYLQYGELKYDSNSKVAQLGDKRLALSASELKLLVAFLSNPNRILDENHLKDYLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+ +E V  N +  H+  LRK    K+G + + ++R LG+ +
Sbjct: 180 GV-NEDVSSNALNVHLFNLRK----KVGKNIIVTERGLGFRL 216


>gi|309390021|gb|ADO77901.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 229

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 16/170 (9%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +RA+    Q+P+I ++        +   + G DD + KP   RE++AR+ AI+R
Sbjct: 60  MEVCRQMRANKKLRQIPIIMLTAKGEEIERILGLEMGADDYMTKPFSPRELVARIKAIFR 119

Query: 118 RLKVSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           R+K      E    ++ S G+        +  +  E   L  +E  +L YL+ N+G+ ++
Sbjct: 120 RIKELKVDQEKIKDKIISAGKLKLDIPRHEVFLGTEKIILTPKEFELLRYLVINQGRVLS 179

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  +   I+G ++ A +   V+ HI +LR+K++     D + + R +GY 
Sbjct: 180 RDLLLEKIWG-YEYAGDTRTVDVHIRRLRQKIKA----DQIVTVRGVGYK 224


>gi|320009638|gb|ADW04488.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 20/207 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +   A+               ++   + +  L R+ R  S VP++ +
Sbjct: 38  ALRYEGWEVRSAGDGAGAVRTARDFRPDAVILDVMLPDMDGLAVLGRLRRELSDVPVLFL 97

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134
           +   S++  +    +G DD V KP    E++AR+  + RR   ++ R+E+    G + + 
Sbjct: 98  TARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGTASVRSESTLVVGDLVLD 157

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +     +   L   E  +L +LM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 158 EDSHEVHRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDRVWN-YDFGGQANVVELYI 216

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           S LRKK+    G  P + ++R  GY I
Sbjct: 217 SYLRKKI--DAGRTPMIHTRRGAGYLI 241


>gi|288940893|ref|YP_003443133.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288896265|gb|ADC62101.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 236

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 18/158 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP++ +S   S    +   D+G +D V KP   +E LARV A+  RL  +  R 
Sbjct: 73  LRHWSTVPVMILSVRSSESEKVAVLDAGANDYVTKPFGIQEFLARVRALL-RLPRATERP 131

Query: 127 ETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + G   ++ DG        R   V GE   L R+E  I + L++N G+ + +TQ+   I+
Sbjct: 132 DAG---IYDDGYLHIDLIKRIVSVMGEEVHLTRKEFAIFKMLVSNPGQVITQTQLLREIW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           G    A + + + + I ++R+KLR     +  D  R+L
Sbjct: 189 GP-THAGDTHYLRNFIGRIRQKLR-----EDTDEPRYL 220


>gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 238

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SNN A+      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218


>gi|168491488|ref|ZP_02715631.1| response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|183574210|gb|EDT94738.1| response regulator [Streptococcus pneumoniae CDC0288-04]
          Length = 225

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYTGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +  +GF  +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222


>gi|134099882|ref|YP_001105543.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912505|emb|CAM02618.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 234

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 10/204 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+D         G ++E     E    L +  + D+  ++  L G G   LE
Sbjct: 12  LVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGG--LE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   +VP++ ++        +   + G DD V KP   RE++ RVA+I RR + S
Sbjct: 70  VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 129

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              AE      G +R+  D R   + G    L  RE  +L +L+ + G+  ++ ++   +
Sbjct: 130 QP-AEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G      + + V  H+ +LR+K+
Sbjct: 189 WGW--SFGDHSTVTVHMRRLREKV 210


>gi|28872582|ref|NP_795201.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968546|ref|ZP_03396689.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato T1]
 gi|301383518|ref|ZP_07231936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato Max13]
 gi|302062568|ref|ZP_07254109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato K40]
 gi|302130235|ref|ZP_07256225.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28855837|gb|AAO58896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926834|gb|EEB60386.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato T1]
 gi|330878107|gb|EGH12256.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330967971|gb|EGH68231.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|331017829|gb|EGH97885.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 229

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 102/213 (47%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G++ +E E   Q+ A     + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   ++  +   PI V     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRAGPTDGES---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|329851780|ref|ZP_08266461.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328839629|gb|EGF89202.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 219

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 14/169 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +  L ++ R+    P++ ++   ++   ++  DSG DD + KP    E++AR  A+ 
Sbjct: 56  GSGLAWLTQLRRSGDSTPVLILTARDAVGHRIEGLDSGADDYLVKPFDLDELIARCRALL 115

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKT 171
           RR        E  P   +    DP+ +  ++      L  RE  + E L+A RG  V+K 
Sbjct: 116 RRASEHVALREVAPGVDY----DPQARRILYHHQPVHLSAREMAVFERLVAARGGIVSKG 171

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  ++Y  +   ++ N VE HIS     +R+KL  D + + R +GY +
Sbjct: 172 QIEESLYD-WSRDIDSNTVEVHIS----SIRHKLSRDVIQTVRGMGYRL 215


>gi|298291053|ref|YP_003692992.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927564|gb|ADH88373.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 5/175 (2%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDS 93
           EE L+++  +   AI   ++  G   +E+ + +RA  Q  P+I +S   S+    +   +
Sbjct: 34  EEALRAANGKAWEAIILDVMLPGRSGIEVCKALRAGGQTAPIIMLSARSSVNERTEGLMA 93

Query: 94  GVDDVVNKPIHHREILAR--VAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP    E+LAR  V A+ R    S  R  T GP+ +  D R  ++ G    L 
Sbjct: 94  GADDYIIKPFAFEELLARLKVQALRRSNADSEPRVLTAGPLSLDLDTRQAQLAGTRVRLT 153

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
            RE  +L  LM +  + +A+  IF+A++     A   NVV+ ++  LR KL   L
Sbjct: 154 EREVELLALLMRHPSEPLARADIFAALWAGHGGA-SLNVVDVYVGYLRHKLAEAL 207


>gi|295090383|emb|CBK76490.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           I+R  S+ P+I ++      + +  FD   DD + KP     +L R+ A+ RR +     
Sbjct: 67  ILRKESRTPIIMLTARDDDASQMKGFDVLADDYIIKPFSMPLVLRRIEAVLRRTE-QGTE 125

Query: 126 AETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            E   IR      D E     V  +   L  RE  IL+ L+ N GK  ++  +  +++G 
Sbjct: 126 EEPSVIRYKEITLDAENYEVLVGTDEVSLTSREFEILKLLLENPGKVFSRESLLDSVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   ++ +V +HI    K +R KLG D +++ R +GY I+
Sbjct: 185 YEYYGDQKIVNTHI----KNIRKKLGVDYIETIRGVGYKIE 221


>gi|291531882|emb|CBK97467.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           70/3]
          Length = 244

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 17/173 (9%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R  S  + +I +S        +     G DD V KP    E++ARV A+YRR+ 
Sbjct: 64  ELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAVYRRVS 123

Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +S  R          +GP  + +  R     G    + + E ++LEY M N G  + +  
Sbjct: 124 LSIARPPEDEGRTLISGPFSINTKSRIFTKNGTGIEITQVEYQLLEYFMENSGSALDRRS 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK---RFLGYSIDW 222
           I + I+G  D   ++ +V+ +I +LR K+      DP + +      GY   W
Sbjct: 184 ILTHIWG-NDYYGDDKIVDVNIRRLRMKIEE----DPSNPRYITTIWGYGYKW 231


>gi|228988075|ref|ZP_04148175.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771645|gb|EEM20111.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL YLM N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            I+G ++ A ++  V SHI  LR KL  K  +  V +    GY  + N
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY--VTTVVRTGYKFEGN 228


>gi|229080343|ref|ZP_04212868.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228703012|gb|EEL55473.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RRLKVS 122
           R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R     
Sbjct: 66  RRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSSAV 125

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N  AE    +  I V    R   + GE   L   E  I+ YLM N+G  +++ Q+ + I+
Sbjct: 126 NVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLINKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK 204
           G ++ A ++  V SHI  LR KL  K
Sbjct: 186 G-YEFAGDDRTVNSHIRNLRHKLGQK 210


>gi|119896995|ref|YP_932208.1| DNA-binding response regulator CreB [Azoarcus sp. BH72]
 gi|119669408|emb|CAL93321.1| two-component system regulatory protein [Azoarcus sp. BH72]
          Length = 235

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 10/168 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP+I ++        +   + G DD V KP   RE+ +RV AI RR + 
Sbjct: 64  DVCRALRRESDVPVIFLTARSDEVDRIVGLELGADDYVPKPFSPREVASRVRAILRRARP 123

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                         + P    + G      G    L R E R+L  L+   G+  ++ Q+
Sbjct: 124 QPAAVAPAPAAETCSAPFHHDAAGARIAYHGVWLSLTRYEYRLLATLLDRPGRVQSRAQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            + ++   ++++E   V++HI  LR KLR  +   DP+++ R LGYS+
Sbjct: 184 MADVWRDAEDSLERT-VDAHIKTLRAKLRAVREDEDPIETHRGLGYSL 230


>gi|315094756|gb|EFT66732.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
          Length = 243

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 22/220 (10%)

Query: 18  LFGDDGVSLEGFNSL--EFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELP 64
           L  +D  SL G  S+   +E W  ++A     A+      + + +           LE+ 
Sbjct: 21  LVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLPDFDGLEVM 80

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R IR +   VP + ++   ++   +    +G DD + KP    E++AR+  + RR   + 
Sbjct: 81  RQIRMNQPTVPAVFLTAKDAISGRIAGLTAGGDDYITKPFSLEEVIARLRTLLRRAGATE 140

Query: 124 NRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++++    G + +  D R+    GE   L   E  +L Y M N  + ++K QI   ++ 
Sbjct: 141 PKSDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDRVWN 200

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            +D   + NVVE +IS LRKK+    G  P + + R  GY
Sbjct: 201 -YDFRGQANVVELYISYLRKKIDR--GHTPMIHTMRGAGY 237


>gi|300692435|ref|YP_003753430.1| response regulator, cheY family [Ralstonia solanacearum PSI07]
 gi|299079495|emb|CBJ52171.1| putative response regulator, CheY family [Ralstonia solanacearum
           PSI07]
          Length = 232

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+    + +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR    
Sbjct: 66  LKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGG 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP+     GR   ++ +V  L  RE  +LE L++  G+ V+K Q+   + G +
Sbjct: 126 GATLVRHGPLAFDQVGRIAYIRDQVVDLSAREIGLLEILLSRAGRLVSKEQLVDHLCG-W 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E V  N +E ++ +LRKK+  ++    + + R LGY ++
Sbjct: 185 GEEVSNNAIEVYVHRLRKKI--EVDGIRIATVRGLGYCLE 222


>gi|312115081|ref|YP_004012677.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220210|gb|ADP71578.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 230

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R  +A  + P++ ++        +   ++G DD V KP    E++AR+ A+ RR   V
Sbjct: 63  LERWRKADIKTPVLILTARDRWSEKVAGINAGADDYVAKPFQMEEVIARIRALLRRSAGV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    E G +R+ +       +G    L   E R+L YLM ++ + V++T++   +Y   
Sbjct: 123 AKAELECGDLRLDTRTARVTWKGTAVKLTGLEFRLLSYLMHHQSRVVSRTELVDHLYQQ- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   + N +E  I +LR+K+      D + + R LGY +
Sbjct: 182 DFERDSNTIEVFIGRLRRKIPA----DIIHTVRGLGYCL 216


>gi|326204682|ref|ZP_08194538.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985249|gb|EGD46089.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 6/130 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPL 149
           G DD + KP   RE++ARV A++RR+  +     +    G I +  + R+      +  +
Sbjct: 99  GADDYITKPFSVRELVARVKALFRRVNTATEPKIDVLSHGEITIDCNRREVYKGSRLLEM 158

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFD 208
           P +E  +L+ L+ N+GK +++  +   I+G FD   E   V+ HI  LR+K+  N     
Sbjct: 159 PLKEFELLKMLVLNKGKVLSREHLLDKIWG-FDYYGETRTVDVHIRYLRQKIEDNDENPT 217

Query: 209 PVDSKRFLGY 218
            +++ R +GY
Sbjct: 218 YIETVRGIGY 227


>gi|212218644|ref|YP_002305431.1| transcriptional regulatory protein [Coxiella burnetii CbuK_Q154]
 gi|212012906|gb|ACJ20286.1| transcriptional regulatory protein [Coxiella burnetii CbuK_Q154]
          Length = 232

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 17/226 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + DG  A     G +++     +    + SS  E    I   L       L+
Sbjct: 13  LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 72

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR  +   P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 73  VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR--- 129

Query: 122 SNNRAETGPIRVFSD-GRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFS 175
           S  RA+  PI    D   DP      F      + RRE  +L+ L+ N G+ +++ Q+  
Sbjct: 130 SKERAK--PIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQ 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +YG + E ++ N +E HI  LRK+   KL    + + R +GY ++
Sbjct: 188 TLYG-WGENIDSNALEVHIHNLRKRFGAKL----IRTIRGVGYMVE 228


>gi|160915022|ref|ZP_02077235.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991]
 gi|158432821|gb|EDP11110.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991]
          Length = 232

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 4/135 (2%)

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEV 146
           L  F+ GVDD + KP   RE+LARV A  +R K     R   G I +    R   ++ + 
Sbjct: 96  LHAFEKGVDDYITKPFSPRELLARVNAHLKRRKGREEPRLVFGDICMDLKRRSILLKEQE 155

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L ++E  +LEY ++N+   +++  I + I+G FD   +  +V+ H+ KLR KL N   
Sbjct: 156 LELTKKEFDLLEYFISNKEVVLSRDNILNEIWG-FDYDGDTRIVDVHVFKLRSKLAN--S 212

Query: 207 FDPVDSKRFLGYSID 221
              + S R +GY I+
Sbjct: 213 NIQIKSMRGIGYVIE 227


>gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 243

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 24/215 (11%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE-LPRIIRAHSQVPLIGISDYP 82
           V  E   S  FE+    ++RE    I   L+  G   L+ L R+       P+I ++   
Sbjct: 29  VDTEDHGSAGFEK----ASRESYDLILLDLMLPGMNGLDILSRLRHQGLTTPIIILTAKN 84

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----------KVSNNRAETGPIR 132
                +    SG DD + KP    E+LARV A+ RR           +  +++ + G + 
Sbjct: 85  GEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTSGGDEGVLSDQKDSSKIQLGELE 144

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           ++ +  +  + G+   L  +E  +L YL    G  + +  + +A++G FD    +  V+ 
Sbjct: 145 IYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTRDDLMNAVWG-FDYIGGQRTVDV 203

Query: 193 HISKLRKKLRNKLGFDP----VDSKRFLGYSIDWN 223
           H+S LRKKL      DP    +DS R +GY +  N
Sbjct: 204 HVSSLRKKLE----LDPDSVHIDSIRGVGYKLVVN 234


>gi|260599895|ref|YP_003212466.1| transcriptional regulatory protein YedW [Cronobacter turicensis
           z3032]
 gi|260219072|emb|CBA34427.1| Probable transcriptional regulatory protein yedW [Cronobacter
           turicensis z3032]
          Length = 226

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R     P++ ++   ++   +   + G DD + KP    E+LARV A  RR   +  
Sbjct: 64  RALRTAKATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHTPAAA 123

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183
             +   + + +        GE   L R+E  +L  L +  G+ + +T I S ++G+ FD 
Sbjct: 124 TLQVADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWGINFDS 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E NVV+  I +LRKK+ +      +++ R +GY ++
Sbjct: 184 --ETNVVDVAIRRLRKKIDDPFPLKLIETVRGMGYRLN 219


>gi|259418488|ref|ZP_05742406.1| transcriptional activator protein CopR [Silicibacter sp. TrichCH4B]
 gi|259345883|gb|EEW57727.1| transcriptional activator protein CopR [Silicibacter sp. TrichCH4B]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETG 129
           + P++ +S    +   ++   +G DD + KP    E+ AR+ A+ RR  LK         
Sbjct: 72  ETPILFLSAMDGINDRVEGLLAGSDDYLVKPFSFHELSARLVALVRRPPLKTEETVLRVA 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +    R     G    L  RE  +LEYL+ N  + V +T +  A++   FD   + N
Sbjct: 132 DLEMNLIRRTVSRGGTEVELQPREFSLLEYLIRNADRVVTRTMLLEAVWDFHFDP--KTN 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           VVE+HIS+LR K+      + + + R  GYS+
Sbjct: 190 VVETHISRLRNKVDKPFATELIHTIRGAGYSL 221


>gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 243

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 19/165 (11%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNR 125
            P+I ++   + +  +     G DD + KP    E+LARV+A+ RR       +K ++N+
Sbjct: 75  TPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSGHADEVKTTDNQ 134

Query: 126 AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + ++ +  +  + G+   L  +E  +L YL    G  + +  + + ++G FD
Sbjct: 135 GNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRDDLMNVVWG-FD 193

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSIDWN 223
               +  V+ H+S LRKKL      DP    +DS R +GY +  N
Sbjct: 194 YIGGQRTVDVHVSSLRKKLE----LDPESVHIDSIRGVGYKLVVN 234


>gi|154251384|ref|YP_001412208.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155334|gb|ABS62551.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD+G DD V KP    E+LAR+ A+ RR    +++  E GP+RV +      V G    L
Sbjct: 91  FDAGADDYVAKPFFMEEVLARLRALLRRATGHASSELECGPVRVDTRSSRVTVNGRAIKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L Y+M ++G+ +++T++   +Y   FD   + N +E  + +LR+    KLG D
Sbjct: 151 TSLEYRLLSYMMHHQGRVISRTELVEHLYDQDFDR--DSNTIEVFVGRLRR----KLGKD 204

Query: 209 PVDSKRFLGYSI 220
            +++ R LGY +
Sbjct: 205 VIETVRGLGYRL 216


>gi|157371577|ref|YP_001479566.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157323341|gb|ABV42438.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+ +    +P++ ++    +   +   + G DD + KP    E+ AR+ A+ RR + V
Sbjct: 63  LARLRKRGQDLPVLLLTARTDVADRVKGLNLGADDYLTKPFELDELEARIRALLRRSVGV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    + G +    +G   ++  +   L  RE  +L  L+  RG+ VAK Q+F  ++ L 
Sbjct: 123 TQQALQYGALTYHDEGYF-QLDDKPLQLTPRELAVLTALIHRRGRPVAKQQLFEQVFTLS 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DEA  E+ +E ++ +LRKKL+       + + R LGYS++
Sbjct: 182 DEANPES-IELYVHRLRKKLQGS--NVAIITLRGLGYSLE 218


>gi|322383919|ref|ZP_08057649.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151396|gb|EFX44583.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 244

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----- 117
           + R IR  S +P+I ++       TL  F+ G DD V KP     +LAR   +       
Sbjct: 81  VCRRIRKTSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYAI 140

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + N   +  I V    R  +V G+   L   E  IL YLM N+G  + + Q+ + I
Sbjct: 141 EEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITKI 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G ++ + ++  V SHI  LR KL +K
Sbjct: 201 WG-YEFSGDDRTVNSHIRNLRTKLGDK 226


>gi|313891011|ref|ZP_07824632.1| putative DNA-binding response regulator [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120635|gb|EFR43753.1| putative DNA-binding response regulator [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 78/157 (49%), Gaps = 2/157 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S +P+I ++   + +  L  F++G D+ + KP     + AR+  +++R  +
Sbjct: 60  EYLKWLREFSSIPVIMLTVKNADEYVLKGFENGADEYITKPFSLPVLKARIDNLFKRKDM 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SNN      + +       ++  E   L R+E  +LE L+ N+   + + +I  +++G  
Sbjct: 120 SNNEIVFHGLSLNLTSMTAKLNNENLELNRQEFAVLELLLENKNINLIREKIIDSVWGYD 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              V +N +   I +LR KL++   +  + + R LGY
Sbjct: 180 LYEVNDNTLTVTIKRLRNKLKDYGKY--IKTVRGLGY 214


>gi|229070657|ref|ZP_04203894.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228712479|gb|EEL64417.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RRLK 120
           + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R   
Sbjct: 64  VCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSS 123

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             N  AE    +  I V    R   + GE   L   E  I+ YLM N+G  +++ Q+ + 
Sbjct: 124 AVNVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLINK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           I+G ++ A ++  V SHI  LR KL  K
Sbjct: 184 IWG-YEFAGDDRTVNSHIRNLRHKLGQK 210


>gi|229198983|ref|ZP_04325670.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228584529|gb|EEK42660.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL YLM N+G  + + Q+ S
Sbjct: 124 KRLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 KIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|255690604|ref|ZP_05414279.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM
           17565]
 gi|260623875|gb|EEX46746.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM
           17565]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 8/140 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--- 124
           +  ++VP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR   +     
Sbjct: 72  KKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTAAAETERV 131

Query: 125 --RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R     + +    +   +  E  PL ++E  IL  L+ N+G+  ++  I + I+   D
Sbjct: 132 PERLTYQTLVIDITKKKVSIDEEEVPLTKKEFEILLLLVQNKGRVFSREDILARIWS--D 189

Query: 183 EA-VEENVVESHISKLRKKL 201
           E  V +  ++ +I++LRKK+
Sbjct: 190 EVYVLDRTIDVNITRLRKKI 209


>gi|225407891|ref|ZP_03761080.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme
           DSM 15981]
 gi|225042570|gb|EEG52816.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme
           DSM 15981]
          Length = 260

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP     + A+V A  RR  + +  A     GP R   D      QGE   L 
Sbjct: 119 GADDYITKPFSTMVLCAKVKACLRRSSLLSGHANELIAGPFRYICDEMRLFKQGEEIFLS 178

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
            +E  +++Y ++N+ K + K QI+  ++   D+ V++N +  HI +LR K+ +  G  PV
Sbjct: 179 GKECLLMKYFLSNQNKILTKDQIYRYVWN--DDFVDDNTIMVHIRRLRMKIEDSPGH-PV 235

Query: 211 DSK--RFLGY 218
             K  R +GY
Sbjct: 236 YLKNIRGMGY 245


>gi|219872086|ref|YP_002476461.1| two component transcriptional regulator/response regulator
           consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Haemophilus parasuis
           SH0165]
 gi|219692290|gb|ACL33513.1| two component transcriptional regulator/response regulator
           consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Haemophilus parasuis
           SH0165]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ +G        G S++ F   +      SSA  D   ++  L    G +V
Sbjct: 3   ILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTLPKMDGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R  RA+  VP++ ++   +L   +     G DD + KP    E++AR+ A I RR 
Sbjct: 63  LQSWR--RANQDVPVLILTARDTLDERIMGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   E   ++   + R   ++ +   L  RE  +LE  M N+ + + ++ I   +Y 
Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLYT 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +D+ V  N +E HI  LR+KL
Sbjct: 181 -WDDEVSSNALEVHIYNLRQKL 201


>gi|213158597|ref|YP_002319895.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|301344826|ref|ZP_07225567.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB056]
 gi|301596622|ref|ZP_07241630.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB059]
 gi|213057757|gb|ACJ42659.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB0057]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
           +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + +  
Sbjct: 64  QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ + FD
Sbjct: 124 NELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNINFD 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N ++  + +LR K+  +     + + R LGY I
Sbjct: 184 --TDTNFIDVAVRRLRSKIDEEYEPKLIHTIRGLGYKI 219


>gi|160916112|ref|ZP_02078319.1| hypothetical protein EUBDOL_02139 [Eubacterium dolichum DSM 3991]
 gi|158431836|gb|EDP10125.1| hypothetical protein EUBDOL_02139 [Eubacterium dolichum DSM 3991]
          Length = 220

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 9/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I ++   S    L   + G DD V KP + + +LAR+A + +R   S    
Sbjct: 63  IRKKSNLPIIVVTSRDSEMDELISMNLGADDFVTKPYNLQILLARIARVLQR---SYEHE 119

Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +  +++     D        +G+   L + E RI+  L  N+ K V++ ++   ++   
Sbjct: 120 NSNILKIHDIALDISKSTLSYKGKSCDLTKNELRIMHCLFINKNKIVSRNELMQHMWDC- 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  V++N +  +I++LRKKL      D + +KR LGY I
Sbjct: 179 DLFVDDNTLTVNINRLRKKLELLQLDDLIVTKRGLGYII 217


>gi|160880215|ref|YP_001559183.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428881|gb|ABX42444.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 79/159 (49%), Gaps = 1/159 (0%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + I++    P+I ++      + +   D G DD ++KP   RE+L+R+ ++ RR    
Sbjct: 63  VCKAIKSMGDTPVIFVTASGDEFSVVAGLDMGADDYISKPFRPRELLSRIKSVLRRCGKV 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  E   I+V ++      QG    L   E R+L   ++NRG  +++ ++   I+ +  
Sbjct: 123 QSVIEIEGIQVDTEKGLVLKQGNEIFLSALEYRLLLVFLSNRGTVISRNKLLEEIWDIAG 182

Query: 183 EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + V +N +  ++ +LR+K+  N      + + R LGY +
Sbjct: 183 DFVNDNTLTVYVKRLREKIEDNPQEPTIIKTVRGLGYKV 221


>gi|3237372|gb|AAC38775.1| response regulator homolog [Providencia stuartii]
          Length = 193

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 2/152 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++   S Q  +   +SG DD V KP H  E++AR+ A+ RR   +++   E    
Sbjct: 42  IPVLVLTARESWQEKVQALNSGADDYVTKPFHLEELVARMQALMRRNSGLASQVLELDGF 101

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    ++  V GE   L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 102 VIDLSRKEFTVNGEPVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP-DAELRESHTID 160

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             + +LRKK++     D + + R  GY  D N
Sbjct: 161 VLMGRLRKKIQQFHANDVIVTVRGQGYRFDVN 192


>gi|89097745|ref|ZP_01170633.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
 gi|89087604|gb|EAR66717.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
          Length = 233

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 21/200 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIR 68
            +K+GY   F   G   EGF++   E W       D+  ++  L +  G   + L R IR
Sbjct: 20  FMKEGYTGRFVHSG--QEGFDAFNKESW-------DLVIVDWMLPVMDG---VTLCRKIR 67

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR +  +++ E 
Sbjct: 68  ELSTVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLALMARIKAVTRRYQADSSKQEE 127

Query: 129 GP------IRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    ++  D R+   +G+    L  +E  +L Y + N  +  ++ Q+   ++G +
Sbjct: 128 ANYISSQFFKISKDTREVLYKGQPLNNLTPKEFDLLYYFVKNPRQVFSREQLLDRVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKL 201
               +E  V+ HI +LRKK+
Sbjct: 187 QFYGDERTVDVHIKRLRKKI 206


>gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K  N  +
Sbjct: 68  IREEQHMPIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRRYKKYNTES 127

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E        G + + +D R     G+   L  +E  ILE L  N+G  ++ ++I+ +++ 
Sbjct: 128 EADKNVIVIGSLEINTDTRLVYAGGKEIRLTPKEFDILELLARNKGIVMSVSKIYESVWK 187

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             D    +N V  HI+K+R+K+
Sbjct: 188 -EDLLKSDNTVMVHITKIREKI 208


>gi|325003064|ref|ZP_08124176.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 219

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP++ I+    +   +    +G DD + KP+   E+LAR+ A+ RR      
Sbjct: 64  REIRERSRVPILAITGRGDVAARVQGLRAGADDYLVKPVSTDELLARIDAVLRR-STGGA 122

Query: 125 RAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            A T   G + V  + R     G+   L R+E  +L  L    G  + +T++   ++G+ 
Sbjct: 123 VASTVAVGDVVVDLERRSVTAAGDEVALTRKEFDLLAALARREGAVLPRTELLEQVWGVA 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D +     +E+H++ LR KL  +   + V + R +GY +
Sbjct: 183 DGSAART-LEAHVASLRSKLGAR---EVVVTVRGVGYRL 217


>gi|317062130|ref|ZP_07926615.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313687806|gb|EFS24641.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 225

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK 120
           + R IR  SQVP+I ++        L  F+   D+ + KP + + ++A+V A+ RR    
Sbjct: 67  VCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGKI 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V     E G + + +  R+ ++   V  L  +E  +L + + N+G  +++ +I ++++G 
Sbjct: 127 VDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +   V++HI    K+LR K+G + + + R  GY  +
Sbjct: 186 WDYFGDSRTVDTHI----KRLRKKIGDNFIQTVRGFGYKFE 222


>gi|313672415|ref|YP_004050526.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939171|gb|ADR18363.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 231

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 8/168 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR +S++P++ +S   S+   +   + G DD + KP  + E++AR+ AI RR   
Sbjct: 63  QLCKAIRKNSELPILILSAKESVTDKVLCLEYGADDYITKPFQNIELIARIKAILRRCAC 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    E     ++      +V+        EV     +E  I  YL+ N+GK V++ ++ 
Sbjct: 123 NYGTEEEHTSILYYKNFIIDVENMIVKRDDEVINFTPKEFEIFLYLVRNKGKIVSRDKMI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + ++G  +       ++ HI  +R+K+ +N  G   + +   +GY ++
Sbjct: 183 NELWGKDNLYKWSRSIDVHIQHIRQKIEKNSKGHLYLKTISGVGYKLE 230


>gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 235

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + +RA    P+I ++   S    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAKRVRAKHNTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQD 121

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +  NN  + G + +  D      +G+   L  RE  +L YL  + G+ + + Q
Sbjct: 122 AANTPNAETENNDIKIGALTIHPDAYTVTKRGDNINLTHREFELLHYLAQHIGQVIKREQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 211


>gi|229060336|ref|ZP_04197702.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
 gi|228718926|gb|EEL70543.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 9/164 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR  
Sbjct: 61  LEVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRR-- 118

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N   +      F D       R      E   L  +E  +L   M N  + + +  + 
Sbjct: 119 EENTEQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++G +D  VE N+V+ ++  LR KL +    + + + R  GY
Sbjct: 179 DQVWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221


>gi|225174725|ref|ZP_03728723.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169852|gb|EEG78648.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 236

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 103/206 (50%), Gaps = 13/206 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEK 59
           +++DD  +V +  + L+G+     EGF  +   + ++ L    RE+   +   ++  G+ 
Sbjct: 8   LVVDDDHIVLE-LVKLYGER----EGFEVIVVSDGDQVLPIYDRENPDVVILDIMLPGKD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L L R +R    +P+I ++        +   + G DD ++KP   RE++AR+ A+ RR 
Sbjct: 63  GLTLCRSLREIRMIPIIMLTAKGEEADRVLGLEMGADDYISKPFSPRELVARIKAVLRRT 122

Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +    V+N + +   + + +D R   V  E   L  RE  +L +L  N  +   + ++ +
Sbjct: 123 QAVEGVTNWKLKYNGLEIHADIRRVLVDREHIELTPREFDLLYHLAKNPQRVFTRDELLA 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
           A++G +D   ++  V+ HI +LR KL
Sbjct: 183 AVWG-YDYFGDQRTVDVHIRRLRTKL 207


>gi|222147387|ref|YP_002548344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium vitis S4]
 gi|221734377|gb|ACM35340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium vitis S4]
          Length = 227

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R      ++P+I ++        +    +G DD V KP    E++ARV A+ R
Sbjct: 62  IELCRRLRMRPDTERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K  V ++    G I +  +      +     L   E R+LE+LM + G+  +++Q+  
Sbjct: 122 RAKPEVLSSLLRCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMTSPGRVFSRSQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|154484485|ref|ZP_02026933.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC
           27560]
 gi|149734333|gb|EDM50250.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC
           27560]
          Length = 234

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 23/194 (11%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI--------IRAHSQVPL 75
           +S EG+N ++  + +++        I+  LI      + +PR+        IR  S +P+
Sbjct: 25  LSKEGYNVIKAYDGMEAMEILKKEDIQLLLID-----VMMPRLDGIRATLKIREKSSIPI 79

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-------T 128
           I +S        +   D G DD + KP +  E++ARV +  RR       AE        
Sbjct: 80  IILSAKSEDSDKIIGLDVGADDYITKPFNPLELIARVKSQIRRYTRLGTIAEPKSNVYSV 139

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EE 187
           G + +  + ++ +V GE+  L   E  IL +L+ N G+     QI+ A++   +EAV  +
Sbjct: 140 GGLEIDDECKEVKVDGEIVKLTPFEYNILLFLVKNPGRVFTIDQIYEAVWN--EEAVAAD 197

Query: 188 NVVESHISKLRKKL 201
           N V  HI  +R+K+
Sbjct: 198 NTVAVHIRHIREKI 211


>gi|238785377|ref|ZP_04629364.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           bercovieri ATCC 43970]
 gi|238713704|gb|EEQ05729.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           bercovieri ATCC 43970]
          Length = 175

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I +S   S +  +   D+G DD ++KP    E+LARV    RR    +  +
Sbjct: 17  LRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGGS 73

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  P+  F+D       R     GE   L   E R+L  L+AN GK + + Q+ S ++G 
Sbjct: 74  QESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLSALLANAGKVITQRQLLSQVWG- 132

Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216
                  N VE H   LR     LR KL  DP   K  L
Sbjct: 133 ------PNYVE-HSHYLRIYMGHLRQKLEADPTRPKHLL 164


>gi|107028754|ref|YP_625849.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116690087|ref|YP_835710.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170733421|ref|YP_001765368.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105897918|gb|ABF80876.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116648176|gb|ABK08817.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169816663|gb|ACA91246.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 9/154 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
            P++ +S    +   +    +G DD + KP    E+ AR+  + RR + S    +T    
Sbjct: 73  TPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQASGVPQQTLLKV 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187
           G + +    R      +  PL   E R+LE++M N G+ + +T +F A++G  FD     
Sbjct: 133 GALELDLISRCARRGADEIPLLPTEFRVLEFMMRNAGQTITRTMLFEAVWGYHFDPGT-- 190

Query: 188 NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           N+++ H+ +LRKK+ +  G +P + + R  GY +
Sbjct: 191 NLIDVHMGRLRKKI-DPPGANPMIQTVRGSGYML 223


>gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium
           resistens DSM 45100]
          Length = 231

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 22/222 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R+L+ +GY  +   DG       +LE    + +S R D++ ++  +  +    LE+ R +
Sbjct: 18  RSLIFNGYTVVLASDGA-----EALE----IIASERPDLAILDVMMPRRDG--LEVCREL 66

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           R+H   +P++ ++   ++   +   D+G DD + KP    E+LAR  +++RR  + + N 
Sbjct: 67  RSHGDDIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLFRRATRPAINE 126

Query: 126 AETG-PIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           A++  P+R      +PE + EV        L R E  +LE L+ N  K +++  I   ++
Sbjct: 127 AQSHEPLRFEDLTLNPETR-EVRRDERQISLTRTEFALLELLIRNPRKVLSRNNILEEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N +E +I  LRKK         + + R +GY +
Sbjct: 186 G-YDFPTSGNALEVYIGYLRKKTEQDGESRLIHTVRGVGYVL 226


>gi|295702506|ref|YP_003595581.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294800165|gb|ADF37231.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 230

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IRA+  Q P+I ++   +L   +   D G +D + KP    E+ AR+  ++ R 
Sbjct: 63  LEVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARI-RVWLRH 121

Query: 120 KVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             S + AE        G + V    R+   + E   L  +E  +L Y++ N+ + ++  Q
Sbjct: 122 PASTSTAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + ++G FD   + N+V  +I  LRKK+        + + R +GY +
Sbjct: 182 LLTNVWG-FDYYGDTNIVYVYIRYLRKKIDASFSTPYIQTVRGVGYML 228


>gi|225874253|ref|YP_002755712.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794322|gb|ACO34412.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 230

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
            P++ ++      + ++  ++G DD + KP    E+LAR  A+ RR K VS+     G +
Sbjct: 74  TPVLVLTAVAEKASVIELLNAGADDYLAKPFDLGELLARAKALIRRGKGVSHPVINIGAL 133

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            + +  +     G    L   E R+LE+L       V+K  +   +Y  ++     NV+E
Sbjct: 134 VLDTVEKSVTCHGIPIELSPTEYRVLEFLGHRPRSVVSKQTLLEHLYD-YNWEHHSNVIE 192

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +HIS LR+KL  + G   +++ R  GY +
Sbjct: 193 AHISNLRRKLNQQEGDAWIETLRGRGYRL 221


>gi|225419690|ref|ZP_03761993.1| hypothetical protein CLOSTASPAR_06028 [Clostridium asparagiforme
           DSM 15981]
 gi|225041675|gb|EEG51921.1| hypothetical protein CLOSTASPAR_06028 [Clostridium asparagiforme
           DSM 15981]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 4/158 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS        +   + G DD + KP     + A+V A+ RR      ++
Sbjct: 67  IRQCSKVPVIFISSAADNLNIVMAMNMGGDDFIAKPFDLDVLTAKVQAMLRRTYEFAGQS 126

Query: 127 ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                R   +  D     + G   PL R E+RIL+ L+ N+G+ V++  +   ++   D 
Sbjct: 127 RLLEHRGAVLNVDDATLTIAGNKLPLTRNEQRILQTLLENKGRIVSRDHLMLRLWE-SDS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            V++N +  +I++LRKKL        + +K+  GY ID
Sbjct: 186 YVDDNTLTVNITRLRKKLEQAGLPGFILTKKGSGYLID 223


>gi|239813055|ref|YP_002941965.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239799632|gb|ACS16699.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ ++     +  +   D+G DD + KP    E+ AR+ A+ RR K + +    G +
Sbjct: 80  RTPVLVLTARGRTEERIAGLDAGADDYLGKPFDLAEVEARLRALVRRAKGTEDIVLLGQL 139

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           ++    R          LP RE  +L  LM+  G+ V+K  +   +   FDE++ +N +E
Sbjct: 140 KLDRKARRFSTASGPLDLPAREFEVLWELMSPPGRTVSKRALSDKLSS-FDESLGDNALE 198

Query: 192 SHISKLRKKL 201
           + IS+LRKKL
Sbjct: 199 AFISRLRKKL 208


>gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 15/169 (8%)

Query: 47  SAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
            A E FL  K + VL    LP I        IR  S +P+I ++        +   + G 
Sbjct: 40  EAQEGFLEYKPDLVLLDIMLPHIDGVDVLKWIRKDSTIPIIMLTAKGDTFDKVLALELGA 99

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRR 152
           DD + KP   +E+LARV A+ RR  V N   E      + +  +      + +   +P +
Sbjct: 100 DDYIVKPFEPKELLARVKAVLRRYNVDNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPK 159

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           E  +L YL  N+ +   + Q+   ++G +D   +   V+ HI +LR+KL
Sbjct: 160 EFELLYYLARNKNRVFTREQLLCEVWG-YDYPGDSRTVDVHIKRLREKL 207


>gi|163858337|ref|YP_001632635.1| two-component system response regulator [Bordetella petrii DSM
           12804]
 gi|163262065|emb|CAP44367.1| two-component system response regulator [Bordetella petrii]
          Length = 236

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 87/166 (52%), Gaps = 6/166 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL+  R  R  + +P++ ++   +L   L+ F  G DD + KP    E+ AR+ A+ 
Sbjct: 68  GYQVLQTLRAERRQA-IPVLILTARDALDDKLEGFSHGADDYLTKPFALAEVQARLLALI 126

Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            R +  V +   E GP++     R   V G+   L R+  +I+E L+ + G+ V++ ++ 
Sbjct: 127 HRAQGAVVDAVREFGPLQFDGRTRAVLVAGQPVRLTRKSGQIVEALLRDPGRIVSREELE 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G  DE    + + S +  LR+ L +  GFD +++   +G+ +
Sbjct: 187 SVLWG--DEPPSPDALRSQMHLLRRALADA-GFDGIETVHGIGWRL 229


>gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 230

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 3/129 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPR 151
           G DD V KP    EI+AR+ AI RR    +       G + +  D  +  +  E   L  
Sbjct: 98  GGDDYVTKPFSLDEIVARIKAILRRTMQDDEETIIRAGDLTMDQDTHEVSIGSEQIELSP 157

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
            E ++L YLM N  + ++K QI   ++  +D   +  +VES+IS LR+KL        + 
Sbjct: 158 TEFKLLRYLMLNPNRVLSKAQILDHVWE-YDFNGDAGIVESYISYLRRKLDIHTEEPLIQ 216

Query: 212 SKRFLGYSI 220
           +KR  GY +
Sbjct: 217 TKRGFGYML 225


>gi|297529494|ref|YP_003670769.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297252746|gb|ADI26192.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 21/166 (12%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R IRAHS VP++ +S  D+P+    +     G DD + KP H   ++A++ A+ RR+   
Sbjct: 64  RQIRAHSNVPILFLSSRDHPT--DMVMSMQLGADDYIQKPFHFDVLIAKIQALLRRVYNY 121

Query: 123 NNRAETGPIRVFS------DGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIF 174
           N     GP+++ +      D     V  E     L + E  IL++L+A + + VA+T++ 
Sbjct: 122 N----AGPVQLQTWCGATVDYEKSTVSNEHGTVELTKNELLILKHLLAKKNQIVARTELI 177

Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
             ++   DE  V +N +  ++++LRKKL ++LG    +++K   GY
Sbjct: 178 KRLWE--DERFVSDNTLTVNVNRLRKKL-DELGLGRFIETKVGQGY 220


>gi|297191089|ref|ZP_06908487.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150757|gb|EDY65692.2| response regulator [Streptomyces pristinaespiralis ATCC 25486]
          Length = 239

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R+IR  S+VP++  +       T+   ++G DD + KP    ++ AR+AA+ RR  
Sbjct: 70  LDVLRMIRGISRVPVLVATARDDDTETIRLLNAGADDYMVKPFSGGQLAARLAAVLRRSG 129

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + +  +  P+      R+    R   + G    L RRE  +L YL A+  + +++ +I 
Sbjct: 130 PAVDAVDRQPVVQVGELRIDPRARTAHLAGRELALTRREFDLLAYLAAHADQVMSRKRIL 189

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           + ++      +E+  V+ H+S LR+K+  K
Sbjct: 190 AEVWQ--QPYLEDQTVDVHLSALRRKMGEK 217


>gi|296103156|ref|YP_003613302.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057615|gb|ADF62353.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 719

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 22/211 (10%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +GYI     DG +      LE + W          A+   L+      LE+ R IR  ++
Sbjct: 24  EGYIITHEPDGGN--ALQCLEKQPW---------DAVILDLMLPNVDGLEICRRIRQITR 72

Query: 73  -VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P+I IS   S    +   ++G DD + KP   +E++AR+ A++RR +        G I
Sbjct: 73  YLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQAMGQAQSAGNI 132

Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +      DP      + G++  L  RE  +L +   + G+  ++  +   ++G   E   
Sbjct: 133 QAHGLTIDPLARSVLLHGQIVDLTPREFELLYFFARHPGEVFSRLALLEQVWGYQHEGY- 191

Query: 187 ENVVESHISKLRKKLRNKL----GFDPVDSK 213
           E+ V +HI++LR K+   L     F P   K
Sbjct: 192 EHTVNTHINRLRIKIEKTLPSRRSFAPCGEK 222


>gi|294678530|ref|YP_003579145.1| winged helix family two component transcriptional regulator
           [Rhodobacter capsulatus SB 1003]
 gi|294477350|gb|ADE86738.1| two component transcriptional regulator, winged helix family
           [Rhodobacter capsulatus SB 1003]
          Length = 219

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI 131
            P+I ++    +   ++  ++G DD + KP    E+ AR+ ++ RR   + N     G +
Sbjct: 73  TPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELTARIGSVARRYAGNPNPVIRLGEL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    R+    G+   L  RE  + E L++  G+   K  +   +Y  FD+ +  N +E
Sbjct: 133 TIDLAARELRRAGKAVALTAREWALFELLLSRPGQIFPKRDLEDRLYS-FDDEIGSNTLE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            H+S+LRK    KLG   ++++R LGY +
Sbjct: 192 VHVSRLRK----KLGAQVIETERGLGYRL 216


>gi|257467841|ref|ZP_05631937.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 221

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK 120
           + R IR  SQVP+I ++        L  F+   D+ + KP + + ++A+V A+ RR    
Sbjct: 63  VCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGKI 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V     E G + + +  R+ ++   V  L  +E  +L + + N+G  +++ +I ++++G 
Sbjct: 123 VDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +   V++HI    K+LR K+G + + + R  GY  +
Sbjct: 182 WDYFGDSRTVDTHI----KRLRKKIGDNFIQTVRGFGYKFE 218


>gi|225025447|ref|ZP_03714639.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC
           23834]
 gi|224941731|gb|EEG22940.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC
           23834]
          Length = 226

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R     P+I ++        +   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 63  ELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQ- 121

Query: 122 SNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   A+T  + V+ D         QG   PL + E R+L  L+   G+  ++ ++ +A++
Sbjct: 122 TRPAAKTESVPVWHDDVPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAMF 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           G  +   + + + +HI  LR KLR   +  + + +   LGYS +
Sbjct: 182 G-GNRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSFN 224


>gi|254420558|ref|ZP_05034282.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196186735|gb|EDX81711.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 226

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLKV 121
           L R  R     P++ ++   +    +  FD+G DD + KP H  E +    A + R   +
Sbjct: 63  LERWRREGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSAGI 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           ++     G +R+        V GE   L   E R+L Y+M ++G+ +++T++   +Y   
Sbjct: 123 ASATLSCGGLRLDPRAARANVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYDQD 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + N +E  I +LRK    K+G D +++ R LGY +
Sbjct: 183 FDR--DSNTIEVFIGRLRK----KIGSDRIETVRGLGYRL 216


>gi|218233709|ref|YP_002367381.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229073107|ref|ZP_04206291.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           F65185]
 gi|229079836|ref|ZP_04212368.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           Rock4-2]
 gi|218161666|gb|ACK61658.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228703420|gb|EEL55874.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           Rock4-2]
 gi|228710015|gb|EEL62005.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           F65185]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 5/162 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR +
Sbjct: 61  LEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREE 120

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              N+  +      +++  + R      E   L  +E  +L   M N  + + +  +   
Sbjct: 121 HIENKQVSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G +D  VE N+V+ ++  LR KL +    + + + R  GY
Sbjct: 181 VWG-YDAIVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221


>gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 5/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ + ++  P++ I+   S+   +   D G +D + KP    E+LAR+ A  R     
Sbjct: 66  LRRVRKTNTATPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNINE 125

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ET      + V    RD +  G++  L  RE  +L +L+ ++ + + + Q+ +A++
Sbjct: 126 QQEKETELSIADLTVNEKTRDIQRAGQMLELTPREYDLLVHLLKHQQQVLTRDQLLTAVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G FD   + NVV+ +I  LRKK+        + + R +GY
Sbjct: 186 G-FDYFGDTNVVDVYIRYLRKKVDYPFEKQLIHTVRGVGY 224


>gi|109453246|gb|ABG34103.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453248|gb|ABG34104.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453250|gb|ABG34105.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453252|gb|ABG34106.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453256|gb|ABG34108.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453260|gb|ABG34110.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453262|gb|ABG34111.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453264|gb|ABG34112.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453266|gb|ABG34113.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453268|gb|ABG34114.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453270|gb|ABG34115.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453272|gb|ABG34116.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453274|gb|ABG34117.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453276|gb|ABG34118.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453278|gb|ABG34119.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453280|gb|ABG34120.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453284|gb|ABG34122.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453286|gb|ABG34123.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453308|gb|ABG34134.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453310|gb|ABG34135.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453314|gb|ABG34137.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453324|gb|ABG34142.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453328|gb|ABG34144.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453330|gb|ABG34145.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453332|gb|ABG34146.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453334|gb|ABG34147.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453336|gb|ABG34148.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453338|gb|ABG34149.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453340|gb|ABG34150.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453342|gb|ABG34151.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453344|gb|ABG34152.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453346|gb|ABG34153.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453348|gb|ABG34154.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453350|gb|ABG34155.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453352|gb|ABG34156.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453354|gb|ABG34157.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453356|gb|ABG34158.1| PhoP [Salmonella enterica subsp. indica]
 gi|109453358|gb|ABG34159.1| PhoP [Salmonella enterica subsp. indica]
 gi|109453360|gb|ABG34160.1| PhoP [Salmonella enterica subsp. indica]
 gi|109453362|gb|ABG34161.1| PhoP [Salmonella enterica subsp. indica]
 gi|109453364|gb|ABG34162.1| PhoP [Salmonella enterica subsp. indica]
 gi|109453366|gb|ABG34163.1| PhoP [Salmonella enterica subsp. indica]
 gi|109453368|gb|ABG34164.1| PhoP [Salmonella bongori]
 gi|109453370|gb|ABG34165.1| PhoP [Salmonella bongori]
 gi|109453372|gb|ABG34166.1| PhoP [Salmonella bongori]
 gi|109453376|gb|ABG34168.1| PhoP [Salmonella bongori]
 gi|109453378|gb|ABG34169.1| PhoP [Salmonella bongori]
          Length = 213

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
             E  E + ++  + +LRKK++ +   D + +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITT 212


>gi|149195385|ref|ZP_01872470.1| response regulator receiver domain protein (CheY-like)
           [Caminibacter mediatlanticus TB-2]
 gi|149134476|gb|EDM22967.1| response regulator receiver domain protein (CheY-like)
           [Caminibacter mediatlanticus TB-2]
          Length = 222

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 6/131 (4%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151
           S  DD + KP    E++AR+ A++RR  K+  N  + G + +  D ++ +  G+   L  
Sbjct: 92  SVADDYLTKPFEFEELIARLKALFRRNKKLPENIIKVGDLEMNLDTKEVKRAGKPIELTA 151

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-- 209
           ++  +L+ LM N+ K V    I   ++ + +E  + NV+ +HIS LRKK+    GFD   
Sbjct: 152 KQFELLKLLMINKNKIVTPEMIEENLWEM-NEERDSNVITAHISYLRKKIDK--GFDKEL 208

Query: 210 VDSKRFLGYSI 220
           + + R +GY I
Sbjct: 209 LKTIRGMGYKI 219


>gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
 gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium botulinum H04402 065]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 15/169 (8%)

Query: 47  SAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
            A E FL  K + VL    LP I        IR  S +P+I ++        +   + G 
Sbjct: 40  EAQEGFLEYKPDLVLLDIMLPHIDGVDVLKWIRKDSTIPIIMLTAKGDTFDKVLALELGA 99

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRR 152
           DD + KP   +E+LARV A+ RR  V N   E      + +  +      + +   +P +
Sbjct: 100 DDYIVKPFEPKELLARVKAVLRRYNVDNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPK 159

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           E  +L YL  N+ +   + Q+   ++G +D   +   V+ HI +LR+KL
Sbjct: 160 EFELLYYLARNKNRVFTREQLLCEVWG-YDYPGDSRTVDVHIKRLREKL 207


>gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R]
 gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 255

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 10/149 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LARV ++ RR 
Sbjct: 83  LEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRS 142

Query: 120 KVSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            V +N++          G + +  + RD    G    L R E  +L+ L+ N+ K + + 
Sbjct: 143 AVESNQSSNIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRA 202

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKK 200
           QI   ++G +D     N +E +I  LR+K
Sbjct: 203 QILEEVWG-YDFPTSGNALEVYIGYLRRK 230


>gi|67078048|ref|YP_245668.1| response regulator [Bacillus cereus E33L]
 gi|66970354|gb|AAY60330.1| response regulator [Bacillus cereus E33L]
          Length = 237

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 9/161 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P+I IS+       +   + G DD + +P H+  I+AR+ +  RR+     
Sbjct: 65  RQIRNISICPIIFISELNETTEQIRALECGADDYIAEPSHYDVIVARIRSHIRRVHGEYA 124

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             SN R      + ++ D  + +  G V  L ++E +++E L+ N    V + +IF+ I+
Sbjct: 125 SKSNERTINRSGLVLYPDKMELKYDGRVISLTKKEGQLVELLLKNYPSMVNREKIFNEIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              D  + EN +  +I+++R KL+ +LG  + +++ R  GY
Sbjct: 185 DGID-YIYENTLSVYITRIRYKLK-ELGIRNSIETIRSAGY 223


>gi|42781734|ref|NP_978981.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737657|gb|AAS41589.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 5/185 (2%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+++   +   I   L+  G   +E+ R +RA    P+I ++   S+   +   DSG DD
Sbjct: 38  LEAALETNYDLILLDLMLPGLNGIEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRE 153
            + KP    E+LAR+  I+RR +   N+  +      +++  + R      E   L  +E
Sbjct: 98  YLPKPFAIEELLARMRVIFRREEQIENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKE 157

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             +L   M N  + + +  +   ++G +D  VE N+V+ ++  LR KL +    + + + 
Sbjct: 158 FELLLMFMKNINRVLTRDVLLDQVWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTV 216

Query: 214 RFLGY 218
           R  GY
Sbjct: 217 RGAGY 221


>gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 242

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 15/222 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +       D+G ++E  ++ +    L+   R +  A+   L+  G   LE
Sbjct: 8   LIVEDDAHIAELLRMHLRDEGYAIE--HAADGHAGLRELERGNWDALVLDLMLPGVDGLE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R  RA ++  P+I IS   S    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRRTDA 125

Query: 121 -VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              N R E+G + + +       R+  V G++  L  RE  +L +   N GK  ++  + 
Sbjct: 126 LARNARMESGSLTLGNLDIEPLAREVRVDGKLIELTPREFDLLYFFARNPGKVFSRLDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           + ++G +     E+ V +HI++LR K+      DP + +R L
Sbjct: 186 NQVWG-YQHDGYEHTVNTHINRLRTKVET----DPAEPRRIL 222


>gi|308188702|ref|YP_003932833.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1]
 gi|308059212|gb|ADO11384.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 39/236 (16%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G+S  GF+     +W  +S     +A+EA         L
Sbjct: 3   ILLIEDDRLIGDGIKA-----GLSKLGFSV----DWF-TSGESGCNALEAAPWDAVILDL 52

Query: 62  ELPR-----IIRAHSQ----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
            LP      I+R   Q    VP++ ++   +L   ++    G DD + KP    E+ AR+
Sbjct: 53  SLPERDGLDILRQWRQQGNDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARL 112

Query: 113 AAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
            A+ RR        L+  N     G   V  D        E   L  RE  +LE  M N 
Sbjct: 113 QALIRRRHGQLQPELRHGNVVLIPGSHSVMRD-------DEAIELKSRELALLELFMRNP 165

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+ + ++Q+   +Y  +D  V  N VE HI  LRKKL +  GF  + +   +GY++
Sbjct: 166 GRVLTRSQLEEKLYS-WDADVSSNAVEVHIHHLRKKLGS--GF--IRTLHGVGYTL 216


>gi|255318228|ref|ZP_05359466.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|255304700|gb|EET83879.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 13/168 (7%)

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L L  I +    +P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR 
Sbjct: 61  MLVLKNIRQKFPNLPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALIRRS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV-------FPLPRRERRILEYLMANRGKRVAKTQ 172
            + N   +    ++   G + +++  +         L  RE  IL  L+ +  K  +K  
Sbjct: 121 GLKNTVTDINK-KLSHSGLELDLEQHIACFNDEPIELSNREWSILTALLMHPSKIFSKND 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +Y  FD  V  N VE +I  LR     KLG D + + R LGY +
Sbjct: 180 LEDKLYD-FDSDVSSNTVEVYIHHLRA----KLGKDFIRTIRGLGYRL 222


>gi|229492138|ref|ZP_04385947.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
 gi|229320926|gb|EEN86738.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
          Length = 234

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 5/135 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--- 127
           ++VP+  +S   S+   +   ++G DD + KP    E++AR+ A+ RR   +    +   
Sbjct: 78  NEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTTRATPSVDHPI 137

Query: 128 -TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             GP+ V   G    + G    L +RE  +L  L  + G  +++ Q+   ++G +D A +
Sbjct: 138 TVGPLTVDLRGHRAHIDGRRIELTKREFDLLSVLAEHAGVVLSRAQLLRLVWG-YDFAAD 196

Query: 187 ENVVESHISKLRKKL 201
            NVV+  ++ LRKKL
Sbjct: 197 TNVVDVFVTYLRKKL 211


>gi|229042173|ref|ZP_04189928.1| hypothetical protein bcere0027_2460 [Bacillus cereus AH676]
 gi|228727170|gb|EEL78372.1| hypothetical protein bcere0027_2460 [Bacillus cereus AH676]
          Length = 182

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 8   IEVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 67

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SNN A+      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 68  VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 127

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 128 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 163


>gi|170722646|ref|YP_001750334.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760649|gb|ACA73965.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 231

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 14/164 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G++VL   R +R  S VP++ +S   +    +D  DSG +D V KP   +E LAR+ A+ 
Sbjct: 63  GQQVL---RELREWSAVPVMVLSVRANELQKVDALDSGANDYVTKPFGIQEFLARIRALL 119

Query: 117 RRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R++  +      A  GP+ V    R   ++G    L R+E  +L  L  + G+ + + Q+
Sbjct: 120 RQVPQAGGSEVTASFGPLTVDFAFRKVTLEGAEVALTRKEYALLAQLAGHPGRVITQQQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
              I+G        +V  +H  ++    LR KLG DP  + RF+
Sbjct: 180 LKDIWG------PTHVENTHYLRIVVGHLRQKLGDDPT-APRFI 216


>gi|71907917|ref|YP_285504.1| two component transcriptional regulator [Dechloromonas aromatica
           RCB]
 gi|71847538|gb|AAZ47034.1| two component transcriptional regulator, winged helix family
           [Dechloromonas aromatica RCB]
          Length = 221

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 10/171 (5%)

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  LE+   IRA    VPL+ I+    L   L   D G DD + KP    E+LAR+ A+
Sbjct: 56  GKDGLEVLTSIRAKDNPVPLLIITARDGLNDRLRGLDGGADDYLLKPFEMAELLARMRAV 115

Query: 116 YRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQ 172
            RR K  N  +    G + +    R+  V       L  RE  +L+ L+   G  ++++ 
Sbjct: 116 LRR-KGGNATSVLSNGVVSLDPATREAAVNNSASVQLSNREFALLQALLVRPGAILSRSD 174

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +   IYG + E VE N VE  I  LR+    KLG + + + R +G+ +  N
Sbjct: 175 LEDRIYG-WGEEVESNAVEFLIHALRR----KLGGEVIKNVRGVGWMVSKN 220


>gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
 gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P+I +S       T+   ++G DD V KP   RE++ARV    RR++ +++ A     
Sbjct: 79  NIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRVRPASSGASLSYA 138

Query: 132 RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +  D     V        L   E R+L  L+   G+  ++ Q+   ++G  D  V+   
Sbjct: 139 DITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVWG-RDIYVDTRT 197

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V+ HI++LRK L +  G DP+ + R  GY++
Sbjct: 198 VDVHIARLRKALTSHGGDDPIRTVRGAGYAL 228


>gi|116619216|ref|YP_821372.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222378|gb|ABJ81087.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           G S E   +   E+ L++   E  + +   +   G   LE  R IR+ + +P+I +S   
Sbjct: 25  GHSYEVIEARTGEDALEALPHEMPNLVLLDMNMPGMGGLETCRAIRSGTDIPVIILSVRN 84

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-------IRVFS 135
           + +  +   D+G DD V KP    E+LAR+ A  RR   S +  + GP       + +  
Sbjct: 85  TEKDKVAALDAGADDYVTKPFGIEELLARIRAALRR---SPSGPDGGPHGFTASNLEIDF 141

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
           D R     G+   L  +E  +L YL+A+ G+ V   ++  A++G  D   E   +   I+
Sbjct: 142 DARRVHANGKDVRLTPKEFEMLRYLVAHSGRPVTHRELLQAVWGP-DYGDEPEYLRVFIN 200

Query: 196 KLRKKL 201
           +LRKK+
Sbjct: 201 QLRKKI 206


>gi|325830179|ref|ZP_08163636.1| putative response regulator MprA [Eggerthella sp. HGA1]
 gi|325487646|gb|EGC90084.1| putative response regulator MprA [Eggerthella sp. HGA1]
          Length = 245

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 79/152 (51%), Gaps = 2/152 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           R    VP++ ++   ++   +   DSG DD + KP    E+LA + A+ RR  +V   + 
Sbjct: 76  RKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQGEVLFEKL 135

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +  +  D     +   L  +E  + + LMAN G+ V+K  + + ++G+ + + E
Sbjct: 136 AAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWGV-ESSAE 194

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +N VE+++S LRKK++       +++ R  GY
Sbjct: 195 DNNVEAYVSFLRKKMKFLGSTARIETLRRAGY 226


>gi|317496605|ref|ZP_07954952.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316913270|gb|EFV34769.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 222

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 10/160 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS        +   + G DD + KP     + A++ A+ RR  V N  +
Sbjct: 67  IRKISKVPIIFISSANDDMNIVMAMNIGADDFIEKPFKLVVLKAKIEALLRR--VYNFNS 124

Query: 127 ETGPI----RVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            T  I     +F   RD    G E+  L + E +IL  L+ NR K V++ +I +A++   
Sbjct: 125 GTNLIVYKDVIFDMSRDEIKYGEELAELTKNESKILTVLLENREKIVSREEIINALWQS- 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           D  ++EN +  ++++LR KL++ +G D  + +K+  GY +
Sbjct: 184 DNFIDENTLSVNVNRLRAKLKS-IGVDEFITTKKGKGYIV 222


>gi|319795224|ref|YP_004156864.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315597687|gb|ADU38753.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 226

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 4/132 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEV-FP 148
            D G DD + KP    E++ARV A+ RR  V  +   T G +R     R   V GEV   
Sbjct: 91  LDGGADDYLAKPFSMDELMARVRALARRPAVRASLVMTLGQLRFEHHTRQVHV-GEVGLT 149

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           LPRRE  +LE L+ +RG+ V +  +   +YG  D+ ++ N +++H+S+LR KL       
Sbjct: 150 LPRRELLVLEALLEHRGRTVQREALQDRVYGHKDD-IQSNALDTHVSRLRSKLDKAGAQV 208

Query: 209 PVDSKRFLGYSI 220
            + + R +GY I
Sbjct: 209 EIHAIRGVGYLI 220


>gi|312864518|ref|ZP_07724749.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
 gi|311099645|gb|EFQ57858.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
          Length = 235

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR +
Sbjct: 61  LEVAKEIRKSSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTE 120

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       S++    G +++  D    + +GE   L  RE  +L +L  + G+ + 
Sbjct: 121 NIETAVAEENDTSDSELTIGDLQIIPDAFVAKKRGEELELTHREFELLHHLATHIGQVMT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213


>gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 4/141 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123
           IR  S +P++ ++        L+ F+ G D+ +NKP   + ++ARV A+ RR     +  
Sbjct: 70  IRETSSIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNAVLRRSTDDSLGK 129

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E G I++  D       G    L  +E  +L Y + N G  +++ +I + ++  +D 
Sbjct: 130 KVVEAGGIQLDVDAHVATNDGNPVELSVKEFELLYYFINNEGIALSREKILNHVWD-YDY 188

Query: 184 AVEENVVESHISKLRKKLRNK 204
             +   +++H+ KLR KL +K
Sbjct: 189 FGDARTIDTHVKKLRSKLDDK 209


>gi|228477889|ref|ZP_04062503.1| Two-component response transcriptional regulator [Streptococcus
           salivarius SK126]
 gi|228250379|gb|EEK09619.1| Two-component response transcriptional regulator [Streptococcus
           salivarius SK126]
          Length = 225

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 10/117 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-DPE----VQGE 145
            D+G DD + KPI  +E+LAR+ ++ RR+  S     T  I  F   R D E    V G 
Sbjct: 93  LDAGADDYLTKPISLKELLARLRSLERRVSESF----TAKILTFGSVRLDQEEQELVAGN 148

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
              L  RE +++ + M N  K++    +F  I+   +E V+E++V  +IS LR+KL+
Sbjct: 149 AIRLSSRETKLMAHFMLNPAKKLTTEHLFKTIWE-DEEDVDESIVWVYISYLRQKLQ 204


>gi|268591187|ref|ZP_06125408.1| QseB [Providencia rettgeri DSM 1131]
 gi|291313419|gb|EFE53872.1| QseB [Providencia rettgeri DSM 1131]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 7/147 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P+I ++    +   +   DSG DD + KP    E+++RV A+ RR+   S+   + G +
Sbjct: 73  IPIIILTARNQMDNLVSSLDSGADDFLTKPFAMPELISRVKAVSRRMAGFSSEIWQLGNL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           ++        +  ++  L  +E  +L  L+ N    V KT +   ++GL D  VE N +E
Sbjct: 133 QLNPLNHQVTLNEQLLLLSGKEYLLLYELIKNADNVVRKTDLEQRLFGLDD--VESNSLE 190

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            HI  LR+    K+G D + + R +GY
Sbjct: 191 VHIHNLRR----KIGKDRIITIRGIGY 213


>gi|162295961|gb|ABX83929.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR     KV+
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKVT 137

Query: 123 NNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N       I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL+ +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLKEQGIFQMLINVRGVGYRLD 238


>gi|94970088|ref|YP_592136.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552138|gb|ABF42062.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 5/140 (3%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           I +A    P++ ++    L   +     G DD + KP    E++AR+ A+ RR  +    
Sbjct: 68  IRQAGVATPILMLTARGQLVDKVVGLKIGADDYMTKPFEMIELMARIEALLRRSPMRPPE 127

Query: 126 AET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            E     G +RV   G +   +G+   L  RE ++L YL+ NRGK V++ ++   ++G +
Sbjct: 128 KEEVQQFGDLRVDLRGTEVTREGKPVALSAREFQLLRYLLENRGKTVSRGELLKEVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKL 201
             +     V+ HI+ LR+K+
Sbjct: 187 SASTYTRTVDMHIASLRQKI 206


>gi|83941435|ref|ZP_00953897.1| two-component response regulator [Sulfitobacter sp. EE-36]
 gi|83847255|gb|EAP85130.1| two-component response regulator [Sulfitobacter sp. EE-36]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 6/165 (3%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + +R A +  P++ ++   S+   +   ++G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LTLVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRP 119

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +          G + +    R     G+   L  RE  +LE+L+  +G+   +T +  A+
Sbjct: 120 QAMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + FD     NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 180 WDISFDPMT--NVVETHISRLRAKVDKPFDRELIQTVRGAGYRID 222


>gi|324328720|gb|ADY23980.1| Two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL YLM N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|319893322|ref|YP_004150197.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317163018|gb|ADV06561.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 225

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 4/161 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   ++   + P+I ++   +L      F +G DD V KP    E++ R+ A+ RR ++
Sbjct: 63  ELCETLKYDYEYPVIMLTARDALSDKERAFLAGTDDYVTKPFEVAELIFRIQAVLRRYQI 122

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     T G + +     + +V+ +   LP +E  +L  L+A   +   + Q+   I+G+
Sbjct: 123 ATETLLTLGNLTIDQTQLEVKVETKGMILPHKEFELLSLLVAYPKQVFPREQLIEKIWGI 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            D   +E  V+ HI +LR +L+ KLG +  +++ R +GY +
Sbjct: 183 -DYEGDERTVDVHIKRLRARLK-KLGANVYIETVRGIGYKV 221


>gi|291563929|emb|CBL42745.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 234

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 18/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +  F +   +E L+   +E++  +   ++  G   L
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGYKV--FKANNAKEGLEILDQEEIHLVLLDIMMPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  + +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCRKIRETNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 122 SNNRAETG-------PIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N  + TG        IR  S  +D     V GE   L   E  IL  L +N G+  +  
Sbjct: 124 LNPNSSTGKAAKNEISIRGLSINKDNHKVVVYGEEIKLTPIEFDILYLLASNPGRVFSTD 183

Query: 172 QIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
           +IF  ++   +E V E  N V  HI +LR K++     D + +  + +GY I+
Sbjct: 184 EIFEKVW---NEKVYEANNTVMVHIRRLRGKMKEDTRQDKIITTVWGVGYKIE 233


>gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     V
Sbjct: 68  IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSV 127

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N++  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 128 EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIYEAVWK 187

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208


>gi|223934839|ref|ZP_03626758.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223896292|gb|EEF62734.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 236

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 17/200 (8%)

Query: 13  DGYIALFGDDGVSLEGF---NSLEFEE--WLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           D  IA F  +G+   GF      + EE     ++ + D + ++  L  K + +  + R+ 
Sbjct: 23  DAKIASFVVNGLKQSGFAVDRCADGEEGHTFAATTKYDAAVVDVML-PKLDGLSLVQRLR 81

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           +   ++P+I +S   S+   +    +G DD + KP    E+ AR+ A+ RR   ++N  E
Sbjct: 82  KEGIRIPVIFLSAKASVDDRVKGLQAGGDDYLTKPFAFSELHARIQALIRR---ASNATE 138

Query: 128 TGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
              + V   G D   +     GE   L  RE  +LEYLM N G+ V KT I   I+   F
Sbjct: 139 PTRLTVGDLGLDLLTREVTRGGEKIELQSREFALLEYLMRNTGRAVTKTMILEHIWDYSF 198

Query: 182 DEAVEENVVESHISKLRKKL 201
           D   + NVV+  + +LR K+
Sbjct: 199 DP--QTNVVDVLVFRLRNKI 216


>gi|167757542|ref|ZP_02429669.1| hypothetical protein CLORAM_03092 [Clostridium ramosum DSM 1402]
 gi|167702539|gb|EDS17118.1| hypothetical protein CLORAM_03092 [Clostridium ramosum DSM 1402]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 7/160 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR +S VP++ IS        +    +G DD + KP     +L ++ AI RR      + 
Sbjct: 66  IRENSTVPILFISSREQNADKILALSAGGDDYIEKPFDLELLLVKIKAILRRTYEYKHLE 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               +         GR    Q +V  L + E +I+  L+  RG  V + Q+   ++   D
Sbjct: 126 KEYLDEDTSYDIVRGRFV-YQNKVLELTKSEGKIMSTLLGQRGNWVTREQLMMTLWNT-D 183

Query: 183 EAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           E V +  +  HIS+LR KL+    G D + +K+ +GY ID
Sbjct: 184 EFVTDATLSVHISRLRNKLKELTNGKDIIKTKKGVGYYID 223


>gi|116333655|ref|YP_795182.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099002|gb|ABJ64151.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR+ 
Sbjct: 61  IEVARRVREVKSTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRIH 120

Query: 121 VSNNRAETGPIRV-FSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   +  T    V F D       R      EV  L +RE  +L  LM N    +A+  +
Sbjct: 121 LEGEQKSTKQTTVKFKDLTIEKENRIVRRGDEVINLTKREYELLLALMENINVVLARDVL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            + ++G ++  VE NVV+ ++  LR K+
Sbjct: 181 LTKVWG-YESEVETNVVDVYVRYLRNKI 207


>gi|158320018|ref|YP_001512525.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140217|gb|ABW18529.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 225

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 1/160 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + ++A    P++ ++    L+  +   D G DD + KP H   +LAR+  + R    
Sbjct: 62  EICKGLKAKGIGPILILTSRNQLRDEIHALDLGADDYLIKPCHPDRLLARIQKLIRLYSN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N   E+G IR+          G+   L   E  I++ L+      V K ++F  I+G  
Sbjct: 122 LNILLESGDIRLEEKTNTLYFNGKAVVLSENEGMIMKMLIEADTSVVKKEELFIRIWG-S 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E V+EN+++ ++++LR+ L +    D + + R +GY ++
Sbjct: 181 TEFVDENILQVNMTRLRRTLESIGITDRIKTIRGVGYRLE 220


>gi|260904787|ref|ZP_05913109.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Brevibacterium
           linens BL2]
          Length = 219

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 17/166 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++ +    +P++ ++   +   T+   +SG  D + KP    E+LAR+     RL++ 
Sbjct: 64  LSQLRKDRPDLPVLVLTARDNADDTIFALESGAADYMIKPFRFGELLARI-----RLRLK 118

Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E        G +R+    R   V  ++  L  RE  + E L+ NRG  +++ Q+ S
Sbjct: 119 ETATEAPQTELVRGDVRIDLLKRQVWVADKIIDLSARELSLAEILLQNRGNVLSREQLLS 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G FD     NVV+ ++  LRK    KLG D V + R  GY +D
Sbjct: 179 HVWG-FDFDPGSNVVDVYVGYLRK----KLGSDFVTTVRGFGYRVD 219


>gi|51244452|ref|YP_064336.1| Pho family two-component response regulator [Desulfotalea
           psychrophila LSv54]
 gi|50875489|emb|CAG35329.1| probable two-component system response regulator (Pho family)
           [Desulfotalea psychrophila LSv54]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 5/153 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRA 126
           A  + P++ +S   S+   +     G DD + KP    E+L RV A+ RR +  +   R 
Sbjct: 69  AGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQKHSPQTRL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             GP+ +    +     G    LP +E  +L Y+  N G  ++KT I   +YG  FD   
Sbjct: 129 SIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVYGYNFDP-- 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + NVV+  + +LR K+    G   + + R +GY
Sbjct: 187 QTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGY 219


>gi|117922456|ref|YP_871648.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614788|gb|ABK50242.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 227

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+ +     P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR   S  
Sbjct: 65  RVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAG 121

Query: 125 RAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +A      GP  + +   +     E+  L   E ++ E  M ++G+  +KT +   IY  
Sbjct: 122 KASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  ++ NV+E  I +L KKL     ++ +++ R  GY +
Sbjct: 182 -DFDLDSNVIEVFIRRLCKKLDPDNQYNLIETLRGQGYRL 220


>gi|296104675|ref|YP_003614821.1| two-component system, OmpR family, response regulator QseB
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059134|gb|ADF63872.1| two-component system, OmpR family, response regulator QseB
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 219

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 27/230 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F   +  +    SA  D   ++          L
Sbjct: 3   ILLVEDDKLIGDGIKAGLSKMGFSVDWFTDGKTGQAALCSAPYDAVVLD----------L 52

Query: 62  ELPRI-----IRAHSQV----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
            LP I     +RA  +     P++ ++   +L   ++    G DD + KP    E+ AR+
Sbjct: 53  TLPEIDGLAILRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARL 112

Query: 113 AAIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            A+ RR      R+E   G + +        ++GE   L  +E  +LE LM N G+ + +
Sbjct: 113 EALVRR-SHGQTRSELRHGKVTLDPTSLIATLEGETLALKPKEFALLELLMRNAGRVLPR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I   +Y  +D+ V  N VE H+  LR+    KLG + + +   +GY++
Sbjct: 172 KAIEEKLY-TWDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 216


>gi|257784884|ref|YP_003180101.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473391|gb|ACV51510.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   ++   + L   +G   +   S E       +A  D+  ++  L G  G+++
Sbjct: 4   ILVVEDDHQIQQELVLLLQRNGFEAQALTSFEAVPQQIIAAHPDLVLLDLNLPGIDGQQI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R +R  S VP+I ++   +    L     G DD + KP + + +L  + ++ RR  
Sbjct: 64  C---REVRQLSNVPIIVVTSRNTDLDELMVLSLGADDFIAKPYNTQILLMHITSVLRR-- 118

Query: 121 VSNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +N+   TG       + + S         +   L + E RIL  LM N G  V++ +I 
Sbjct: 119 -TNSDVTTGAQLSHAGVTLDSSSCKVSANQKSVELTKNELRILSLLMQNAGTVVSRQRIQ 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++   DE V++N +  +IS LR  L +    D V ++R LGY I+
Sbjct: 178 EELWQ-SDEFVDDNTLTVNISHLRNTLASIGVEDFVMTRRGLGYVIE 223


>gi|154245480|ref|YP_001416438.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159565|gb|ABS66781.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 34/200 (17%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV---------------LELPRI-------- 66
           ++LE   WL    R+D   ++ F    GE+                L LP+I        
Sbjct: 8   DNLELAGWLAKILRQDNYVVDVF--HDGEEADHALAVAAYDLVILDLTLPKINGMQLLRR 65

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           IR+    VP+I ++   SL   +   D G DD + KP    E+ AR+    RR   S  R
Sbjct: 66  IRSRKDTVPVIILTANASLDGRVAGLDEGADDYLAKPFDIAELEARIRVQLRR---SARR 122

Query: 126 AE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G +   ++ R   + G    L  RE  +LE L+   G+ V+K Q+  +I+GL 
Sbjct: 123 PDPVISCGALAFDTNTRLFALSGTPLALTPREHAVLEMLLMKSGQTVSKAQLSQSIFGL- 181

Query: 182 DEAVEENVVESHISKLRKKL 201
           D+  + + +E ++ ++RKKL
Sbjct: 182 DDLADPSAIEIYVHRVRKKL 201


>gi|330970055|gb|EGH70121.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 227

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ + +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 63  GRDGMDICKELRSFSDVPIVMITARVEEIDRLLGLDPGADDYICKPFSPREMVARVKAIL 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   S      G ++V          G    L   E R+L     + G+  ++  +   
Sbjct: 123 RRSSSSEPHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SHI  LR+KL     G DP+ S   +GY ++ 
Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227


>gi|153937923|ref|YP_001390256.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152933819|gb|ABS39317.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318352|gb|ADF98729.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 15/214 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L K+GY ++   DG           +  L    RE +  I + ++        L ++IR
Sbjct: 20  VLNKNGYKSIEAKDG-----------DSALDILYREYIDLIISDIMMPNMDGYTLTKLIR 68

Query: 69  -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
            +++ VP++ I+   +     + F  G DD + KPI   E++ RV A+ RR ++ N R  
Sbjct: 69  ESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQIINERKI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G      D    +   +   LP++E  ++  L++   K   + Q+   I+G+  E  +
Sbjct: 129 VIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGIESET-D 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V+ HI++LR + ++   F+ + + R LGY +
Sbjct: 188 PRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220


>gi|77359341|ref|YP_338916.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874252|emb|CAI85473.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK-------VSNNRAETGPIRVFSDGRDPEVQGEV 146
           G DD + KP +HRE+LARV AI RR++        S+N+     + +    R+  ++   
Sbjct: 93  GADDYIPKPFNHRELLARVKAITRRIEHITTMNTTSSNKLVVNGVTINLAAREALIKQTT 152

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKLR 202
             L   E  IL  L    G+ V+K QI   + G     FD +     ++ H+S +RKK+ 
Sbjct: 153 LTLTGTEYEILALLAKRAGEVVSKEQISEDVLGRRLASFDRS-----IDMHVSNIRKKIA 207

Query: 203 NKLGFDPVDSKRFLGY 218
             L  + + + R  GY
Sbjct: 208 EHLPNELIKTIRGTGY 223


>gi|257485933|ref|ZP_05639974.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331010343|gb|EGH90399.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 245

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 97/196 (49%), Gaps = 15/196 (7%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           VS+EG  +L     +  + + D+  ++  L   GE    + R +R     P++ ++    
Sbjct: 32  VSIEGNGALATARII--AEQPDLVILDLML--PGEDGFSICRSVRDRYDGPILMLTARTD 87

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN------NRAETGPIRVFSDG 137
               +   D+G DD V KP+H R +LAR+ A+ RR +          R   GP+ V +  
Sbjct: 88  DTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRRLVFGPLVVDNAL 147

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R+  ++ +   L   E  +L  L+AN G+ +++ +IF+A+ G+  +  ++  ++  IS++
Sbjct: 148 REAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFTALRGVGYDG-QDRSIDVRISRI 206

Query: 198 RKKLRNKLGFDPVDSK 213
           R     K+G DP+  +
Sbjct: 207 RP----KIGDDPIHPR 218


>gi|229075160|ref|ZP_04208154.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228707937|gb|EEL60116.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----- 117
           + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +       
Sbjct: 64  VCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSS 123

Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++  ++    +G I V    R   + GE   L   E  IL Y M N+G  +++ Q+ +
Sbjct: 124 AVKVLTADTLTSSG-IHVHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204
            I+G ++ A ++  + SHI  LR KL  K
Sbjct: 183 KIWG-YEFAGDDRTINSHIRNLRHKLGQK 210


>gi|291326456|ref|ZP_06124598.2| KDP operon transcriptional regulatory protein KdpE [Providencia
           rettgeri DSM 1131]
 gi|291314289|gb|EFE54742.1| KDP operon transcriptional regulatory protein KdpE [Providencia
           rettgeri DSM 1131]
          Length = 239

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 6/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L R +R  S +P+I +S        +   D+G DD + KP    E+LARV    RR  
Sbjct: 75  LDLIRDLRQWSSIPIIVLSAREEESQKVAALDAGADDYLTKPFGISELLARVRVALRRFG 134

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S   N++ + G I +    R    QGE   L   E R+L  L+AN GK + +  +   +
Sbjct: 135 KSTQENSKCQFGDITIDFINRIVTKQGEELHLTPIEFRLLSELVANSGKVLTQRHLLLQV 194

Query: 178 YGLFDEAVEEN-VVESHISKLRKKLRN 203
           +G     VE N  +  ++  LR+KL N
Sbjct: 195 WG--PNYVEHNHYLRIYMGHLRQKLEN 219


>gi|255656914|ref|ZP_05402323.1| two-component system esponse regulator [Clostridium difficile
           QCD-23m63]
 gi|296452246|ref|ZP_06893952.1| response regulator [Clostridium difficile NAP08]
 gi|296877598|ref|ZP_06901628.1| response regulator [Clostridium difficile NAP07]
 gi|296258903|gb|EFH05792.1| response regulator [Clostridium difficile NAP08]
 gi|296431359|gb|EFH17176.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S +P+I IS        +   +SG DD + KP ++  ++A++ +  RR+     
Sbjct: 66  RCIRQQSNLPIIFISARDGNVDQIRALESGADDYITKPFYYDVVMAKIKSNIRRVYGEYS 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K+     E   ++ + +  + E+  +   + ++E  ++E L+    K V++  +   I+
Sbjct: 126 TKIDERIVELDGLKFYPERLELELHSKNLIITKKEGILIECLIKRYPKVVSRDYLLEKIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
               E VEEN +  ++S++RK+   +LG D  V + R LGY ++ N
Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRFE-ELGIDNAVQTIRGLGYKLNKN 229


>gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus
           sphaericus C3-41]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 10/167 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L RI    S+ P+I ++    ++  +   D G +D V KP    E+LAR   I   L+ S
Sbjct: 65  LKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLAR---IRNALRFS 121

Query: 123 NNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + T      G + +    R+    G+   L  RE  +L YLM +  + + + QI   
Sbjct: 122 QNASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILET 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G FD   + NVV+ +I  +R+KL        + + R +GY +  N
Sbjct: 182 VWG-FDYYGDTNVVDVYIRYVRQKLEIANATPIIQTVRGVGYVLKEN 227


>gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
 gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
          Length = 235

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 23  LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 72  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGSAEKEE 131

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI +  +      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 132 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 190

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 191 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|325282397|ref|YP_004254938.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324314206|gb|ADY25321.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 222

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 80/159 (50%), Gaps = 2/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +S +P+I ++   +L   +   ++G DD + KP +  E++ARV  +  R + 
Sbjct: 63  EVTRRLRKNSSMPIIILTAMDALDRKVALLEAGADDYMTKPFYPEELVARV-KVQLRHQQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    G + +    R    +G    L  RE  +L +L    G+  ++ +I   ++   
Sbjct: 122 HGDVIRVGDLEIHPQKRLCYFKGHEVRLSPREFDLLTFLARQPGRVYSRAEIEREVWS-G 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     NVV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 181 DLPSNSNVVDVHMANMRSKLRDLDGYGLIRTVRGIGYAL 219


>gi|291006081|ref|ZP_06564054.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 237

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 10/204 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+D         G ++E     E    L +  + D+  ++  L G G   LE
Sbjct: 15  LVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGG--LE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   +VP++ ++        +   + G DD V KP   RE++ RVA+I RR + S
Sbjct: 73  VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 132

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              AE      G +R+  D R   + G    L  RE  +L +L+ + G+  ++ ++   +
Sbjct: 133 QP-AEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G      + + V  H+ +LR+K+
Sbjct: 192 WGW--SFGDHSTVTVHMRRLREKV 213


>gi|289643785|ref|ZP_06475893.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506391|gb|EFD27382.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 242

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 16/123 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-DPEVQ-----GEVF 147
           G DD V KP    E++ARV AI RR   +++    GP+R FSD   DPE +     G   
Sbjct: 111 GGDDYVTKPFAVSELVARVRAILRRAGAADS--TPGPLR-FSDLELDPETREVRRGGRHV 167

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E R+L YL+AN  K + + Q+   ++G  D   E  V+E+++S LR+K+      
Sbjct: 168 ELTATEYRLLHYLLANARKVLTRAQLLDHVWG-HDFGGEARVLETYVSYLRRKI------ 220

Query: 208 DPV 210
           DPV
Sbjct: 221 DPV 223


>gi|212635060|ref|YP_002311585.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212556544|gb|ACJ28998.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR       +  +G 
Sbjct: 72  KAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPKITSGA 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    +   +  E   +   E  ILEYLM +  + VAK ++   IYG  D+  + N +
Sbjct: 132 LEIDLAAKQVSMNEEPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDPNTI 189

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 190 EVMVSRLRKKLTKDGLENPIATIRGQGYKFN 220


>gi|109453258|gb|ABG34109.1| PhoP [Salmonella enterica subsp. enterica]
          Length = 213

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHPLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
             E  E + ++  + +LRKK++ +   D + +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITT 212


>gi|119473456|ref|ZP_01614965.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium
           TW-7]
 gi|119444467|gb|EAW25798.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium
           TW-7]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 16/136 (11%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN-------NRAETGPIRVFSDGRDPEVQGEV 146
           G DD + KP +HRE+LARV AI RR++  N       N+     + +    R+  +    
Sbjct: 93  GADDYIPKPFNHRELLARVKAITRRIEHINSLNINTTNKLLVNGVTINLAAREASIDENT 152

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKLR 202
             L   E  IL  L  N  + V+K QI   + G     FD +     ++ H+S +RKK+ 
Sbjct: 153 LTLTGTEYEILALLCKNASQVVSKEQISEEVLGRRLASFDRS-----IDMHVSNIRKKIA 207

Query: 203 NKLGFDPVDSKRFLGY 218
             +  + + + R  GY
Sbjct: 208 EHIKTERIKTMRGSGY 223


>gi|302184853|ref|ZP_07261526.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 245

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 11/167 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE    + R +R     P++ ++        ++  D+G DD V KP+H R +LAR+
Sbjct: 57  LMLPGEDGFSICRRVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARI 116

Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR +          R   GP+ V +  R+  ++ +   L   E  +L  L+AN G+
Sbjct: 117 KALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 176

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            +++ +IF+A+ G+  +  ++  ++  IS++R     K+G DP+  +
Sbjct: 177 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 218


>gi|225387678|ref|ZP_03757442.1| hypothetical protein CLOSTASPAR_01448 [Clostridium asparagiforme
           DSM 15981]
 gi|225046228|gb|EEG56474.1| hypothetical protein CLOSTASPAR_01448 [Clostridium asparagiforme
           DSM 15981]
          Length = 222

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 21/153 (13%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE VLE  + +R    +P+I +S   SL   +    +G DD + KP    +++AR+ A+ 
Sbjct: 60  GEMVLETIKKLR----LPVIVVSAKSSLVDRVRLLRAGADDYITKPFESADLIARIEAVL 115

Query: 117 RRLKVSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR + S    E G I        V   GR+ ++  + F L       L+Y + NR K V 
Sbjct: 116 RRTERSFGVLEFGDIAMDIDRHVVLKGGREVDITPKEFDL-------LQYFLENRNKVVK 168

Query: 170 KTQIFSAIYGLFDEAVEEN-VVESHISKLRKKL 201
           + ++ + ++G   E +E +  VE H+ +LRKK+
Sbjct: 169 REELSAHVWG--QEYLESSRTVEIHVQRLRKKM 199


>gi|218549147|ref|YP_002382938.1| DNA-binding transcriptional regulator PhoP [Escherichia fergusonii
           ATCC 35469]
 gi|218356688|emb|CAQ89315.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia fergusonii ATCC 35469]
 gi|324113921|gb|EGC07895.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325497568|gb|EGC95427.1| DNA-binding transcriptional regulator PhoP [Escherichia fergusonii
           ECD227]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 103/218 (47%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L++        D G  ++     +  ++  +    D++ I+  L    E  L 
Sbjct: 4   LVVEDNPLLRHHLKVQLQDAGHQVDDAEDAKEADYFLNEHEPDIAIIDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R++   +P++ ++     Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDISLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVIARMQALLRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  E+  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINNEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E + ++  + +LRKK++ +   + + + R  GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPDEVITTVRGQGY 218


>gi|111020130|ref|YP_703102.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819660|gb|ABG94944.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 235

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 6/203 (2%)

Query: 23  GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGI 78
           G+ LEGF    +   E+ L  +  +   AI   ++  G    E+ R +RA     P++ +
Sbjct: 19  GLELEGFVVVTAATGEDGLWHATEDTFDAIVLNIMLPGLNGYEIVRALRAKQIWTPILML 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138
           +         D FD G DD + KP     ++AR+ A+ RR   +     T         R
Sbjct: 79  TAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRAAPARPVLLTAGDLSLDPAR 138

Query: 139 DPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
              ++G E   L  RE  +LE+L+ N    + K +I   ++    +  +EN+VE ++  L
Sbjct: 139 RRVMRGNEELALTPREFGVLEFLLRNPDTALTKGEILRNVWDAHYDG-DENIVEVYVGYL 197

Query: 198 RKKLRNKLGFDPVDSKRFLGYSI 220
           R+K+    G   +D+ R +GY +
Sbjct: 198 RRKIDAPFGAHTIDTVRGVGYRL 220


>gi|332753082|gb|EGJ83466.1| transcriptional regulatory protein qseB [Shigella flexneri 4343-70]
          Length = 210

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 6/148 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132
           P++ ++   +L   ++    G DD + KP    E+ A++ A+ RR    ++N    G + 
Sbjct: 65  PVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAAKLEALMRRTNGQASNELRHGNVM 124

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y  +DE V  N VE 
Sbjct: 125 LDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY-TWDEEVTSNAVEV 183

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           H+  LR+    KLG D + +   +GY++
Sbjct: 184 HVHHLRR----KLGSDFIRTVHGIGYTL 207


>gi|332087272|gb|EGI92404.1| transcriptional regulatory protein qseB [Shigella dysenteriae
           155-74]
          Length = 210

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 6/148 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132
           P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR    ++N    G + 
Sbjct: 65  PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVM 124

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y  +DE V  N VE 
Sbjct: 125 LDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY-TWDEEVTSNAVEV 183

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           H+  LR+    KLG D + +   +GY++
Sbjct: 184 HVHHLRR----KLGSDFIRTVHGIGYTL 207


>gi|322517326|ref|ZP_08070201.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322124023|gb|EFX95576.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 225

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 6/115 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPE-VQGEVF 147
            D+G DD + KPI  +E+LAR+ ++ RR+    ++     G +R+  D  + E V G   
Sbjct: 93  LDAGADDYLTKPISLKELLARLRSLERRVSETFTSKILTLGSVRL--DQEEQELVAGNAI 150

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            L  RE +++ + M N  K++    +F  I+   +E V+E++V  +IS LR+KL+
Sbjct: 151 RLSSRETKLMAHFMLNPAKKLTTDHLFKTIWD-DEEDVDESIVWVYISYLRQKLQ 204


>gi|317048819|ref|YP_004116467.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316950436|gb|ADU69911.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 235

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L L R IR  S +P+I ++        L   + G DD + KP   RE++ARV  I 
Sbjct: 63  GRDGLTLCREIRRFSDLPIIMVTARTEEIDRLLGLEIGADDYICKPFSPREVVARVKTIL 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDP----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR+K S   A+     +  + R      E Q E+ P    E R+L+ L    GK  ++ Q
Sbjct: 123 RRVKRSPEEAQQASHLLIDESRFQASWREQQLELTPA---EFRLLKTLALEPGKVFSREQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 LLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 209


>gi|306827976|ref|ZP_07461243.1| two component response regulator [Streptococcus pyogenes ATCC
           10782]
 gi|304429895|gb|EFM32937.1| two component response regulator [Streptococcus pyogenes ATCC
           10782]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR++AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARISAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|228918481|ref|ZP_04081925.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228950319|ref|ZP_04112489.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809337|gb|EEM55788.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228841166|gb|EEM86364.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 242

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 69  IEVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V           R E   I +         +GE  PL  +E  +L +  +N  +   K+Q
Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYVVFKEGEEIPLTAKEMELLRFFASNPEQVFTKSQ 188

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           +F  ++G  D  +E +N V  HI KLRKK+
Sbjct: 189 LFRNVWG--DNYLEDDNTVMVHIRKLRKKI 216


>gi|229014694|ref|ZP_04171804.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228746600|gb|EEL96493.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 18/165 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  S+ P+I +S   +    +   + G DD +NKP H   ++A+V A+ RR        
Sbjct: 66  MRETSKAPIIFLSSRNTPMDMVMAMNMGGDDFINKPFHTDVLMAKVNALLRRTYTYIEDI 125

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            LKV  +      ++ ++         E   L + E  IL+ LM N+G  V++T+I  ++
Sbjct: 126 ELKVIEHDGIVLNLKTYNVSN----VNEEITLTKNEFIILKLLMQNKGTVVSRTKIMRSL 181

Query: 178 YGLFDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +   DE  V+EN +  +I+++RKK+ + LG D  + +K+  GY I
Sbjct: 182 WA--DERFVDENTLTVNIARIRKKITD-LGKDGFITTKKGYGYII 223


>gi|171780121|ref|ZP_02921025.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281469|gb|EDT46904.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 236

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 ------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                        SN+    G +++  D    + +GE   L  RE  +L +L  + G+ +
Sbjct: 121 NIESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 TREYLLETVWG-YDYFGDVRTVDVTIRRLREKIED 214


>gi|152983128|ref|YP_001354753.1| two-component response regulator [Janthinobacterium sp. Marseille]
 gi|151283205|gb|ABR91615.1| two-component response regulator [Janthinobacterium sp. Marseille]
          Length = 239

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 16/156 (10%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131
           +P+I ++   +++  +    SG DD V KP    E+ AR+ A+ RR K  +      GP+
Sbjct: 92  LPVIVLTARDAIEYRIAGLQSGADDYVLKPFDLGELAARIHAVVRRSKGRATQEITAGPL 151

Query: 132 RVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           R+     DP+     +  ++  L RRE  IL +L    G  +A + +   ++G  D  + 
Sbjct: 152 RL-----DPQYGQVWLNEKLIALSRREFDILIHLANAAGHWLAPSTLRDRVFG-EDIQIS 205

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            N +  HI  +R+    KLG + +++ R LG+ + W
Sbjct: 206 SNALNVHIHNIRR----KLGAEAIETSRGLGFRLGW 237


>gi|15964268|ref|NP_384621.1| phosphate regulon transcriptional regulatory protein [Sinorhizobium
           meliloti 1021]
 gi|150395352|ref|YP_001325819.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|307307005|ref|ZP_07586744.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307320659|ref|ZP_07600072.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|6685724|sp|Q52990|PHOB_RHIME RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|152404|gb|AAB42026.1| phosphate regulatory protein [Sinorhizobium meliloti]
 gi|15073445|emb|CAC45087.1| Phosphate regulon transcriptional regulatory protein [Sinorhizobium
           meliloti 1021]
 gi|150026867|gb|ABR58984.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
 gi|306893694|gb|EFN24467.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306901945|gb|EFN32544.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 227

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +    +G DD V KP    E++ARV A+ R
Sbjct: 62  IELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K  V +     G I +  +      +     L   E R+LE+LM++ G+  +++Q+  
Sbjct: 122 RAKPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226


>gi|332974891|gb|EGK11804.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 233

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 94/197 (47%), Gaps = 5/197 (2%)

Query: 26  LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           LE  + LE  EWL+    E ++ ++  +  K     +L R IR    +P+I ++    LQ
Sbjct: 37  LEAADGLEAAEWLEKEPIE-LAVVDIMMPNKDG--YQLCREIREDYDLPVILLTAKDQLQ 93

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQG 144
                + +G DD + KP   +E+L R+ A+ RR  +VS +        +     +    G
Sbjct: 94  DKEAGYRAGTDDYLTKPFEPKELLFRIKALLRRYQRVSADIIVLNGTAIDRKSYEVRSDG 153

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +   LP +E  +L  L +  G+   + ++   ++G  D A ++  V+ HI +LR++  ++
Sbjct: 154 QTLLLPLKEFELLSQLGSYPGRVFTREELIRLVWGP-DFAGDDRTVDVHIKRLRRRFADR 212

Query: 205 LGFDPVDSKRFLGYSID 221
                + + R +GY ++
Sbjct: 213 AEDFVIQTVRGVGYKLE 229


>gi|320106762|ref|YP_004182352.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319925283|gb|ADV82358.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 225

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 103/201 (51%), Gaps = 16/201 (7%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPR 65
           +RAL+++G+  +   DG   EG +       L  + + D + ++ FL    G +VLE  R
Sbjct: 17  ERALIEEGHRVVVSGDG--REGAD-------LLLTGQFDAALLDIFLPEMDGFEVLE--R 65

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +     + P++ ++   ++   +  FD G DD + KP     +LARV AI RR+   +  
Sbjct: 66  VRTQQCKTPILVLTAVDAVPKIVRAFDLGADDYLVKPFIVEILLARVGAIARRVANHSEE 125

Query: 126 A-ETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           A ETG + V   GR   +  G+   L +++  +L+ LM  +G    + Q+  A +G+  +
Sbjct: 126 APETGSV-VLDRGRRLALRHGKEIALTKKQFELLDTLMRRKGLITTREQLIEAGWGIQAD 184

Query: 184 AVEENVVESHISKLRKKLRNK 204
            V+EN ++ +I  LR KL ++
Sbjct: 185 -VKENTLDVYIHGLRAKLEDQ 204


>gi|298491318|ref|YP_003721495.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233236|gb|ADI64372.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 236

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 24/203 (11%)

Query: 8   RALVKDGYI---ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           R L+++GYI   A  G +G  L    +             D+  ++  L GK    LE+ 
Sbjct: 24  RVLIREGYIVDAAYHGINGSQLAQIGTY------------DLLILDWMLPGKTG--LEIC 69

Query: 65  RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           + +R  ++  P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  +  
Sbjct: 70  QELRRQAKTTPVLFLTAKDTLDDRVQGLDAGADDYLIKPFELRELLARVRALLRRCSIEF 129

Query: 124 NRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               T  + V     D E      QG +  L ++E ++L+Y M   G+ ++ +QI   ++
Sbjct: 130 YNTTTAHLVVADLELDVENQIAYRQGRIIELSQKESQLLQYFMEYTGQLLSHSQIMQHLW 189

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
               +    NV+ + I  LR+K+
Sbjct: 190 P-NGQQPGSNVIAALIRLLRRKI 211


>gi|237735099|ref|ZP_04565580.1| two-component system response regulator [Mollicutes bacterium D7]
 gi|229381875|gb|EEO31966.1| two-component system response regulator [Coprobacillus sp. D7]
          Length = 226

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 7/160 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR +S VP++ IS        +    +G DD + KP     +L ++ AI RR      + 
Sbjct: 69  IRENSTVPILFISSREQNADKILALSAGGDDYIEKPFDLELLLVKIKAILRRTYEYKHLE 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               +         GR    Q +V  L + E +I+  L+  RG  V + Q+   ++   D
Sbjct: 129 KEYLDEDTSYDIVRGRFV-YQNKVLELTKSEGKIMSTLLGQRGNWVTREQLMMTLWNT-D 186

Query: 183 EAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           E V +  +  HIS+LR KL+    G D + +K+ +GY ID
Sbjct: 187 EFVTDATLSVHISRLRNKLKELTNGKDIIKTKKGVGYYID 226


>gi|226349583|ref|YP_002776697.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226245498|dbj|BAH55845.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 85/186 (45%), Gaps = 21/186 (11%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           DV  ++  L GK G  V+   R  R     P++ +S         D FD G DD + KP 
Sbjct: 46  DVVVLDIMLPGKHGYDVVREMR--RQQVWTPVLMLSAKDGEYDLADAFDLGADDYLIKPF 103

Query: 104 HHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRER 154
               ++AR+ A+ RR        L V+    +    RV         +GE    L  RE 
Sbjct: 104 SFVVLIARLRALVRRGAPPRPPVLSVAGLSLDPAMRRV--------TRGETRLQLTPREY 155

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
            +LE+LM + G  V K  I  A++    E  ++N+VE +I  LR+K+    G   +D+ R
Sbjct: 156 SVLEFLMRHAGSVVTKHDILQAVWDANYEG-DDNIVEVYIGYLRRKIDAPFGTTSIDTVR 214

Query: 215 FLGYSI 220
            +GYS+
Sbjct: 215 GVGYSM 220


>gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 237

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 11/170 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR  
Sbjct: 62  MEVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHA 121

Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            + N+ E          GP+ +  D    + +GE   L  RE  +L YL  + G+ + + 
Sbjct: 122 QTANQEEGENETNEIVIGPLVIRPDAYIVQKRGETIELTHREFELLHYLAKHIGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+  N    + + ++R +GY +
Sbjct: 182 HLLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 239

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 103/213 (48%), Gaps = 15/213 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +++DD A ++      F   G  +E  +   + +E+  Q +++ D+  ++  L   G   
Sbjct: 5   LVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLML--PGMDG 62

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R    ++P+I ++        +   + G DD V KP   RE++AR  A+ RR 
Sbjct: 63  LEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRT 122

Query: 120 KVSNNRAE-TGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +   + A+ T   +V   G         +  V+G++     +E  +L+Y M N    +++
Sbjct: 123 ESREDDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            Q+   ++G +  A +  +V+ H+S LR+K+ +
Sbjct: 183 DQLLDRVWG-YSAATDTRIVDVHVSHLREKIED 214


>gi|167630854|ref|YP_001681353.1| two-component response regulator resd [Heliobacterium modesticaldum
           Ice1]
 gi|167593594|gb|ABZ85342.1| two-component response regulator resd [Heliobacterium modesticaldum
           Ice1]
          Length = 240

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 13/149 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122
           R IR  S+VP++ ++        +  F+ G DD V KP   RE++ RV A+ RR   +  
Sbjct: 68  RKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSSTPP 127

Query: 123 --NNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +   E  P        + ++ +GR   V+GE   L   E  +L YL  N G+ +++  
Sbjct: 128 QRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLSRDL 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   ++G ++ A +   V++H+ +LR+KL
Sbjct: 188 LLDRVWG-YEFAGDSRTVDTHVRRLREKL 215


>gi|160886208|ref|ZP_02067211.1| hypothetical protein BACOVA_04215 [Bacteroides ovatus ATCC 8483]
 gi|237723017|ref|ZP_04553498.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|260173666|ref|ZP_05760078.1| two-component system response regulator [Bacteroides sp. D2]
 gi|293372570|ref|ZP_06618952.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|299146715|ref|ZP_07039783.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|315921928|ref|ZP_07918168.1| two-component system response regulator [Bacteroides sp. D2]
 gi|156108093|gb|EDO09838.1| hypothetical protein BACOVA_04215 [Bacteroides ovatus ATCC 8483]
 gi|229447539|gb|EEO53330.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|292632379|gb|EFF50975.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|298517206|gb|EFI41087.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|313695803|gb|EFS32638.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 8/140 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--- 124
           +  ++VP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR   +     
Sbjct: 72  KKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTVTTETERV 131

Query: 125 --RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R     + +    +   +  E  PL ++E  IL  L+ N+G+  ++  I + I+   D
Sbjct: 132 PERLTYQSLVIDITKKKVSIDDEEVPLTKKEFEILLLLVQNKGRVFSREDILARIWS--D 189

Query: 183 EA-VEENVVESHISKLRKKL 201
           E  V +  ++ +I++LRKK+
Sbjct: 190 EVYVLDRTIDVNITRLRKKI 209


>gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W]
 gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II]
          Length = 238

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 13/212 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F  D    +   + + EE L+    E    I   L+      L
Sbjct: 6   ILVVDDEKPISD--IVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKIDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 123

Query: 122 SNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           SN  +          E G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 124 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 184 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIED 214


>gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 235

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 23  LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 72  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 131

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI +  +      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 132 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 190

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 191 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|21954779|ref|NP_665764.1| ANL23 [Synechococcus elongatus PCC 7942]
 gi|81230366|ref|YP_398748.1| response regulator receiver domain-containing protein
           [Synechococcus elongatus PCC 7942]
 gi|21913201|gb|AAM81151.1|AF441790_22 ANL23 [Synechococcus elongatus PCC 7942]
 gi|81170338|gb|ABB58676.1| response regulator receiver domain protein (CheY-like)
           [Synechococcus elongatus PCC 7942]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 15/145 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R+ +A    P++ ++    LQ  +   D+G DD + KP    E+LARV A+ RR      
Sbjct: 65  RLRQAQDSTPVLVLTARDGLQDLVQGLDAGADDYLVKPFRLAELLARVRALLRRSPQTQT 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L+V   R +     V  D   P       PL  RE ++LE LM + G+ +++ Q+   
Sbjct: 125 PLLQVGRLRLDPAQATVQVDDYSP------MPLTAREFQLLEALMHHPGQILSRDQLLDQ 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++ + D     NVV + +  LR+KL
Sbjct: 179 LWPM-DAEPSSNVVAAQVRLLRRKL 202


>gi|320325554|gb|EFW81616.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327160|gb|EFW83174.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330879271|gb|EGH13420.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 3/137 (2%)

Query: 67  IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN- 124
           +RA S+ +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  +    
Sbjct: 66  LRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGEW 125

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           +   G +    D R   +  E+  L  RE+ +LE L+A  G+ ++K Q+ + ++GL DE 
Sbjct: 126 QQRCGVLAYDLDTRRFTLGEELLALTSREQAVLEALIARPGRVMSKEQLAAQVFGL-DEE 184

Query: 185 VEENVVESHISKLRKKL 201
              + +E ++ +LRKKL
Sbjct: 185 ASPDAIEIYVHRLRKKL 201


>gi|298369911|ref|ZP_06981227.1| DNA-binding response regulator [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281371|gb|EFI22860.1| DNA-binding response regulator [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 22/169 (13%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  +  QVP++ ++    L + L   D G DD + KP    E+ AR+ AI RR    
Sbjct: 63  LARLRSSGCQVPVLIVTARDDLHSRLHGLDGGADDYIVKPFDMAELQARMRAILRR---- 118

Query: 123 NNRAETGPIRVFSDG---RDP-----EVQGEVFP--LPRRERRILEYLMANRGKRVAKTQ 172
            N  ++ P+   S+G    +P     ++ G+  P  L  +E  +L+ LM   G   +++ 
Sbjct: 119 -NNGQSQPL--LSNGVLTLNPATYQVQIAGQTEPVALSNKEFAVLQALMMRPGTIFSRSD 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   IYG + E VE N V+  I  LRK    KLG + + + R +G+ ++
Sbjct: 176 LEDKIYG-WGEEVESNAVDFLIHSLRK----KLGKEHIRNVRGVGWLVE 219


>gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 231

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P++ +S   S    +  F  G DD V KP   +E+LAR+ A  RR K 
Sbjct: 61  EVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120

Query: 122 SNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    E G         I +    R+  V+G    L ++E  +LE L  + G+  +K QI
Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +  ++G FD   +   V  HI  +R K+ N    DP
Sbjct: 181 YEKVWG-FDAEGDTTTVTEHIKNIRAKIEN---LDP 212


>gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 234

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 22  LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 71  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 130

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI +  +      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 131 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 225

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 29/212 (13%)

Query: 22  DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGI 78
           D +  EG+     E   ++ AR    A +  ++     G    E  R IRA S VP++ +
Sbjct: 21  DYLEAEGYAVTGVETGEEAVARVRDGAFDCVVLDVMLPGMSGFEACRAIRAFSDVPILFL 80

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------- 131
           S        +     G DD V KP    E++ARV A+ RR + S  +   GP+       
Sbjct: 81  SARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRRYRPSAEQWRFGPLTIDPKGY 140

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           RV+ DGR+         +  +E  +L +L  + G+  ++ Q++  ++G F +      V 
Sbjct: 141 RVWRDGRE-------VAMTAKELELLIFLARHPGQVFSREQLYDRVWGDFGDP---RTVT 190

Query: 192 SHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            HI+++R+K+      DP     + + R LGY
Sbjct: 191 VHINRIREKIEA----DPSRPQFIQTVRGLGY 218


>gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
 gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P+I +S       T+   ++G DD V KP   RE++ARV    RR++ +++ A     
Sbjct: 79  NIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRVRPASSGAALSYA 138

Query: 132 RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +  D     V        L   E R+L  L+   G+  ++ Q+   ++G  D  V+   
Sbjct: 139 DITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVWG-RDIYVDTRT 197

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V+ HI++LRK L +  G DP+ + R  GY++
Sbjct: 198 VDVHIARLRKALTSHGGDDPIRTVRGAGYAL 228


>gi|325284175|ref|YP_004256716.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324315984|gb|ADY27099.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 219

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 6/167 (3%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           E+WL + A + +        G G   L+L   +R +S  P++ +S    +Q  +   ++G
Sbjct: 38  EDWLGTHAPQLILLDLNLPDGDG---LDLVARLRQYSSTPVLVLSARSDVQQRVAGLNAG 94

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
            DD + KP    E+ AR+ A+ RR   S      G   + +      V  +   L   E 
Sbjct: 95  ADDYLTKPFAMPELEARITALLRR-TASGGGVNLGNTSLSTSSLTMTVGDQHINLTEHEA 153

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           RILE +M    +  ++  I S +YG   E    N VE  IS+LRKKL
Sbjct: 154 RILELMMRTPERVFSRADIESHLYGW--ETPSSNSVEVRISQLRKKL 198


>gi|325680030|ref|ZP_08159598.1| putative response regulator MprA [Ruminococcus albus 8]
 gi|324108267|gb|EGC02515.1| putative response regulator MprA [Ruminococcus albus 8]
          Length = 219

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 20/227 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIG- 55
            ++IDD     D YI    ++ ++ EG+  L      ++       + D+  ++  L G 
Sbjct: 4   ILVIDD-----DIYIGDMLEEALNKEGYGVLRAYSGTEALLVVERKKPDLILLDLMLPGL 58

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            GE++L  P+I      +P+I +S    +   +    +G  D V KP +  E+ AR+A  
Sbjct: 59  SGEELL--PKI----KDIPVIVVSAKADVADKVGLLMAGACDYVTKPFNIAELTARIAVQ 112

Query: 116 YRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            R  +   + A    G + +  D     + GE   L R E  IL+ LM N    V +T I
Sbjct: 113 LRMAQSKGDAAALTFGDLTLHCDTLTAAINGEEVRLTRTECAILKLLMQNPNTPVGRTTI 172

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I  +      E  ++ HIS +RKKL    G D +++   +G+ +
Sbjct: 173 LDKI-SIDTPDCTERSLKQHISNMRKKLEAVNGHDYIEAVYGIGFKM 218


>gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 4/159 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKV 121
           R+  A S VP++ ++    +Q  +   D G DD + KP    E+LARV A+ RR    + 
Sbjct: 67  RVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRRKPDRQE 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++ R +   + +  D R+    G    L  +E  +L   M N  + + +  I   I+G +
Sbjct: 127 TDGRLQFEDMTLDLDSREAIRGGRRIDLTAKEFDLLHLFMQNPRRVLTRDSIMDKIWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D + E NV+E +I+ LR+K  +      + + R  GY +
Sbjct: 186 DYSGESNVLEVYIAMLRQKTEDGTAKRLIQTVRGTGYVL 224


>gi|282874751|ref|ZP_06283630.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|281296467|gb|EFA88982.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
          Length = 221

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127
           S +P+I ++   +L T L  F  G  D + KP +  E++ R+  +  +     +S N  +
Sbjct: 69  SNIPIIFLTAKDNLDTRLKCFSLGAKDYLPKPFYMEELIIRIKNVLNQSHSQSLSPNIKK 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           T  + ++ D    +V      + ++E  I++ L  N     +K QI+ +I    ++    
Sbjct: 129 TKELIIYYDTYRIDVNNMTIDITKKEFEIIKLLSLNPQYYFSKEQIYDSIN--LNKTGNT 186

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            VV  HI K+RKKL     F+ +D+K  +GY
Sbjct: 187 QVVAEHIRKIRKKLSCYSRFEYIDTKWGVGY 217


>gi|300022658|ref|YP_003755269.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524479|gb|ADJ22948.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 262

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAET 128
           ++ P++ +S    +   +    +G DD + KP  + E+LARV A+ RR   +    R   
Sbjct: 107 NRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTAPEEQQTRISV 166

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187
           G + +          GE   L  RE R+LEYLM + G+ V +T +   ++   FD   + 
Sbjct: 167 GDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVWDYHFDP--QT 224

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           NV++ H+S+LR K+        + + R  GY+I
Sbjct: 225 NVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTI 257


>gi|134278555|ref|ZP_01765269.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|134250339|gb|EBA50419.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
          Length = 237

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 71/137 (51%), Gaps = 3/137 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124
           + +S +P++ +++       +   ++G DD V KP   +E +ARV A+YRR    +  + 
Sbjct: 68  KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 127

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E GP ++ +  +      E   L  +E  I+E L+ N G+ V++ ++   ++G   + 
Sbjct: 128 LIEIGPYKIQTSEKVVYFHHEAITLSPKEYEIIELLVRNIGQIVSRDKMVCQVWGRLPDE 187

Query: 185 VEENVVESHISKLRKKL 201
                +++HI ++R+KL
Sbjct: 188 AAFRTLDTHIYRIRRKL 204


>gi|126650356|ref|ZP_01722584.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593006|gb|EAZ86988.1| two-component response regulator [Bacillus sp. B14905]
          Length = 241

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR H+  P+I +S   +    L     G DD + KP +  E++AR+  I RR K
Sbjct: 65  FELCTEIRKHTNTPIIFVSARSTDFDKLTGLGIGGDDYITKPFNPLEVVARIKVILRRQK 124

Query: 121 V--SNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  S+++ ++          +PE     V  ++     +E  +L +   N  +    +Q+
Sbjct: 125 MYESSHQQQSSKFDFGYFALNPESATLIVNNQLVDCTAKELELLHFFCKNPNRIFTTSQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  ++G  D   EE  V  HISKLRKKL
Sbjct: 185 YEFVWG-NDVYGEEKTVTIHISKLRKKL 211


>gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 237

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 11/170 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR  
Sbjct: 62  MEVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHA 121

Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            + N+ E          GP+ +  D    + +GE   L  RE  +L YL  + G+ + + 
Sbjct: 122 QTANQEEGENETNEIVIGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+  N    + + ++R +GY +
Sbjct: 182 HLLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 239

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            EL R +RA     Q P+I +S        +   + G DD + KP   RE+LAR+ A++R
Sbjct: 63  FELVRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAVFR 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRV 168
           R++ S    E  P ++ +  RD E+  E + +  R R +         L +L  N GK  
Sbjct: 123 RIQQSAQAKEERPKKILA--RDLEIDTEKYEVRVRNRMVNLTPLEFELLRFLAENEGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++  +   ++G +D   +   V+ HI +LR K+
Sbjct: 181 SRDVLLDKLWG-YDYYGDTRTVDVHIRRLRTKI 212


>gi|299135367|ref|ZP_07028557.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298589775|gb|EFI49980.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 220

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 8/149 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P++ ++   S    +D  D+G DD + KP    E+LAR+ +I RR    +  +     
Sbjct: 72  HMPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRR-SAGHGSSIMSAG 130

Query: 132 RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +  D R  +V  +G    L   E R++ +L+ NRG+ V+  +I   +YG  +E  + N 
Sbjct: 131 EITLDERQMKVTRRGVPITLSPLEYRLVAHLLRNRGRVVSPQEIDENVYGHGEEH-DSNT 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +E  + ++RK    KLG D ++++R  GY
Sbjct: 190 LEVLVGRVRK----KLGADAIETRRGFGY 214


>gi|209964019|ref|YP_002296934.1| two-component transcriptional regulator, putative [Rhodospirillum
           centenum SW]
 gi|209957485|gb|ACI98121.1| two-component transcriptional regulator, putative [Rhodospirillum
           centenum SW]
          Length = 225

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 10/189 (5%)

Query: 37  WLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSG 94
           +L +S   D   ++  L G+ G  VLE   ++RA    +P + +S   S++  +    +G
Sbjct: 38  FLAASESYDALVVDRMLPGRDGLSVLE---VLRATGNGIPALVLSALSSVEDRVKGLRAG 94

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
            DD + KP    E+LAR+ A+ RR + S    R +   + +    R     G    L  R
Sbjct: 95  ADDYLPKPFAFSELLARLDALERRARGSGPVTRLQVSDLEMDLLARSVSRAGRPVDLLPR 154

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           E  +LE+LM N G  V +T +   ++   FD   + NV++ HI++LR+K+        + 
Sbjct: 155 EFLLLEFLMRNAGHVVTRTMLLERVWDYHFDP--QTNVIDVHIARLRQKIDKDHPAPLIH 212

Query: 212 SKRFLGYSI 220
           + R  GY +
Sbjct: 213 TVRGAGYVL 221


>gi|197302733|ref|ZP_03167787.1| hypothetical protein RUMLAC_01463 [Ruminococcus lactaris ATCC
           29176]
 gi|197298315|gb|EDY32861.1| hypothetical protein RUMLAC_01463 [Ruminococcus lactaris ATCC
           29176]
          Length = 244

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 20/169 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + VP+I +S        +   + G DD V KP +  E++ARV +  RR       +
Sbjct: 80  IRETNSVPIIILSAKSEDSDKILGLNIGADDYVTKPFNPLELVARVKSQLRRYNELGGTS 139

Query: 127 --------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E G +R+  D ++  V GE+  L   E  IL  L+ N+G+  +  QI+ +I+
Sbjct: 140 QEQKEKVYEVGGLRINDDLKEVTVDGELVKLTPIEYNILLLLLKNQGRVFSINQIYESIW 199

Query: 179 GLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
              +EA+  +N V  HI  +R+K+      +P D +       +GY ID
Sbjct: 200 N--EEAIGADNTVAVHIRHIREKIE----INPKDPRYLKVVWGVGYKID 242


>gi|168179831|ref|ZP_02614495.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182669455|gb|EDT81431.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|322806384|emb|CBZ03953.1| two-component response regulator BceR [Clostridium botulinum H04402
           065]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 6/191 (3%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91
           +EF   +Q   +E+ S I   +         + R IR  S VP+I ++   S    L   
Sbjct: 32  IEFNNIIQYVEKENASLILLDINLPEFDGYYICREIRKTSDVPIIIVTSRDSEVDELISM 91

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV---QGEVFP 148
           + G DD V KP +   +LAR+  I +R   +     T   + F+          + +   
Sbjct: 92  NLGADDFVTKPYNTEILLARITNILKRTYGNLKTNSTLNYKDFNLNLSNATLIYKDKSLE 151

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF- 207
           L + E +IL YL+ NRG  V +  +   ++   D  V+++ +  +I++LRKKL+ ++G  
Sbjct: 152 LTKNEVKILSYLINNRGNIVKRDSLMEYLWK-SDYFVDDSTLTVNINRLRKKLQ-EIGIE 209

Query: 208 DPVDSKRFLGY 218
           +P++++R LGY
Sbjct: 210 NPIETRRGLGY 220


>gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
 gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
          Length = 237

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCKKLRDKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SNN A+      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218


>gi|163815559|ref|ZP_02206932.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759]
 gi|158449196|gb|EDP26191.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------K 120
           IR +S VP+I ++        +   + G DD V KP +  E+LARV +  RR       +
Sbjct: 67  IRENSNVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRRYMQLGGGE 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              ++   G I +    +   + GEV PL   E  IL+ LM N GK  +  +I+ A++  
Sbjct: 127 TPKDKLVIGGIELDDKSKQVTLDGEVMPLTPTEYDILKLLMQNVGKVFSTKEIYRAVWK- 185

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D    E  V  HI  LR+K+
Sbjct: 186 EDPMGAEGSVAVHIRHLREKI 206


>gi|313891367|ref|ZP_07824983.1| putative sensory transduction protein RegX3 [Dialister
           microaerophilus UPII 345-E]
 gi|313120142|gb|EFR43318.1| putative sensory transduction protein RegX3 [Dialister
           microaerophilus UPII 345-E]
          Length = 234

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 96/186 (51%), Gaps = 13/186 (6%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D+  ++  L G+ G  VL+  R    +S +P++ ++   S    +   DSG DD + KP 
Sbjct: 47  DLILLDIMLPGEDGLCVLKKLRNTNEYSTIPIVMMTAKTSEYDIVKGLDSGADDYITKPF 106

Query: 104 HHREILARVAAIYRRLKVSNNRAETGP-IRVFSDGRDPEVQ-------GEVFPLPRRERR 155
              E+++RV ++ RR     N ++  P I  + +    E +        EVF L  +E +
Sbjct: 107 GIMELISRVKSLLRRSNYGKNTSKEEPKILKYKNTIIDEAKHVVTENGKEVF-LTLKEFK 165

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +L+YL+ N+G  +++ +I   ++    E +E   V+ HI  LRKK+++   +  +++ R 
Sbjct: 166 LLQYLVINKGIVLSRDRIMEVVWDSPIE-IESRTVDMHIKSLRKKIKDCDKY--INTVRG 222

Query: 216 LGYSID 221
           +GY ++
Sbjct: 223 IGYRLE 228


>gi|238797763|ref|ZP_04641257.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           mollaretii ATCC 43969]
 gi|238718404|gb|EEQ10226.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           mollaretii ATCC 43969]
          Length = 238

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 74/159 (46%), Gaps = 20/159 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I +S   S +  +   D+G DD ++KP    E+LARV    RR   S   A
Sbjct: 80  LRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRH--SGGSA 137

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E+ P+  F+D       R     GE   L   E R+L  L+AN GK + + Q+ + ++G 
Sbjct: 138 ES-PLVNFADISVDLINRQVTRAGENLHLTPIEFRLLSALLANAGKVITQRQLLTQVWG- 195

Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216
                  N VE H   LR     LR KL  DP   K  L
Sbjct: 196 ------PNYVE-HSHYLRIYMGHLRQKLETDPTRPKHLL 227


>gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 20/217 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 22  LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 71  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGSAEKEE 130

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI +  +      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 131 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
              +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGY 226


>gi|328944489|ref|ZP_08241951.1| phosphate regulon response regulator [Atopobium vaginae DSM 15829]
 gi|327491073|gb|EGF22850.1| phosphate regulon response regulator [Atopobium vaginae DSM 15829]
          Length = 246

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 13/168 (7%)

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R+++Q   +P+I I+   +    +   D+G DD + KP    E+L+R+ A+ RR 
Sbjct: 74  ITRTLRSNAQWSHIPIIMITAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRRA 133

Query: 120 KVSNNRA--ETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +        +    RV +   DP      V      L  +E  +L YLM + G    +  
Sbjct: 134 QTPAQMPADKYSVCRVGAIMLDPARHYVCVHDTPVNLTHKEYDLLHYLMLHEGLVFTREV 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  A++G FD   E   V+ HI  LR+KL +   +  V + R +GY +
Sbjct: 194 LMQAVWG-FDFEGESRTVDMHIKTLRQKLGDASCY--VHTVRGVGYCV 238


>gi|223983413|ref|ZP_03633599.1| hypothetical protein HOLDEFILI_00879 [Holdemania filiformis DSM
           12042]
 gi|223964585|gb|EEF68911.1| hypothetical protein HOLDEFILI_00879 [Holdemania filiformis DSM
           12042]
          Length = 232

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 14/170 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L R IR  S VP+I ++        +   D G DD + KP      L+R+ A+ RR   
Sbjct: 62  DLCRQIRQTSTVPIIFLTAADEETEIIMGLDLGGDDYITKPFKLAVFLSRIHALLRRQEN 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++    +  IRV    R     GE+  L   E ++L  LM N  + +   QI S ++
Sbjct: 122 FSPADRELASNGIRVQRLERSVYKNGELVNLTAGEYKLLCLLMENPNQVLTPEQILSKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223
              +  V+ N +  +I +LR K+ +    DP D K+      LGY   WN
Sbjct: 182 DCDENYVDANTLTVYIRRLRAKIED----DPSDPKKIVTLRRLGYK--WN 225


>gi|197106149|ref|YP_002131526.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196479569|gb|ACG79097.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 9/159 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNR 125
           R   + P++ +S    +   +D   +G DD + KP    E++AR+ A+ RR      N  
Sbjct: 68  REGDRTPVLFLSALGEVADRVDGLQAGADDYLVKPYAFPELIARIEALARRRDTGSVNTL 127

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
              G + +    R     G+   L  RE ++LE++M + G+ V +T +   ++   FD  
Sbjct: 128 LRVGELEMDLIARTVHRAGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVWHYHFDP- 186

Query: 185 VEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
            + NV++ HIS+LR K+    GFD   + + R  GY +D
Sbjct: 187 -QTNVIDVHISRLRSKIDK--GFDRPMLQTVRGAGYRLD 222


>gi|170288334|ref|YP_001738572.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|170175837|gb|ACB08889.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 2/148 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
             P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR   S + +   G 
Sbjct: 72  NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + +  +     G+   L ++E +ILEYL+ N+ + V K ++   ++  FD+ V  +V+
Sbjct: 132 LILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS-FDDEVFSDVL 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            SHI  LRKK+        + + R +GY
Sbjct: 191 RSHIKNLRKKVDKGFKKKIIHTVRGIGY 218


>gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 237

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 13/212 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F  D    +   + + EE L+    E    I   L+      L
Sbjct: 5   ILVVDDEKPISD--IVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 122

Query: 122 SNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           SN  +          E G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 123 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIED 213


>gi|66046740|ref|YP_236581.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257447|gb|AAY38543.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330973569|gb|EGH73635.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 220

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 13/166 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R +RA +  +P++ ++        +   D+G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LDLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR- 118

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S  RA    E   I +    +    QG   P+   E ++L  LM   GK V + ++ +
Sbjct: 119 --SQGRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +YG + + VE N +E  I  LRKKL  +L    + + R +GY ++
Sbjct: 177 TLYG-WQDKVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217


>gi|268610638|ref|ZP_06144365.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 21/163 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           ++ +S  P+I I+       T+  F+ G DD + KP   RE+LAR+  + RR + ++   
Sbjct: 67  VKKNSDTPVIFITASADEACTVAGFEIGADDYIGKPFGTRELLARMKNVMRRAQKTSPLI 126

Query: 127 ETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             G + +     DP ++G ++       +   E R+L    +N+ + +++ ++   ++ L
Sbjct: 127 NCGNVTI-----DP-IKGIIYKNGHELSMSALEYRMLLVFFSNKNQLLSRDRLAEELWSL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGY 218
             E V +N +  +I +LR+K+ +    DP D K     R LGY
Sbjct: 181 TKEFVSDNTLSVYIRRLREKIED----DPQDPKIIITVRGLGY 219


>gi|256544640|ref|ZP_05472012.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC
           51170]
 gi|256399529|gb|EEU13134.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC
           51170]
          Length = 219

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + +R  S +P+I ++        +   +SG DD + KP    E+++R+ A+ RR  
Sbjct: 59  IEILKEVREFSDIPIIMLTAKNDEYDKVLGLESGADDYITKPFSILELISRIKAVLRRSE 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K          IRV    R  ++ GE   L  +E  +L   ++N G  + +      I+G
Sbjct: 119 KKDGEHLSYKNIRVNIKKRTAKIDGEKIDLTYKEFEMLLLFLSNIGNVITREDFLLKIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL++  G   + + R LGY +
Sbjct: 179 -YDYEGETRTVDVHIASLRNKLKSA-GI-HIKTVRNLGYKL 216


>gi|251811465|ref|ZP_04825938.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805017|gb|EES57674.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
          Length = 217

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127
           S +P+I ++   +L T L  F  G  D + KP +  E++ R+  +  +     +S N  +
Sbjct: 65  SNIPIIFLTAKDNLDTRLKCFSLGAKDYLPKPFYMEELIIRIKNVLNQSHSQSLSPNIKK 124

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           T  + ++ D    +V      + ++E  I++ L  N     +K QI+ +I    ++    
Sbjct: 125 TKELIIYYDTYRIDVNNMTIDITKKEFEIIKLLSLNPQYYFSKEQIYDSIN--LNKTGNT 182

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            VV  HI K+RKKL     F+ +D+K  +GY
Sbjct: 183 QVVAEHIRKIRKKLSCYSRFEYIDTKWGVGY 213


>gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 245

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R  RA ++  P+I  S   S    +   + G DD + KP    E++AR
Sbjct: 56  LMLPGVDGLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVAR 115

Query: 112 VAAIYRRLK--VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164
           V A+ RR+     +++ E G +R+     DP      V G+   L  RE  +L Y   + 
Sbjct: 116 VKALLRRVDALAKDSKIEAGSLRIAGLSIDPLTREAAVDGKPIELTPREFDLLYYFAQHP 175

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           GK  ++  + +A++G   E   E+ V +HI++LR K+      DP   +R L
Sbjct: 176 GKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAQPERIL 222


>gi|154503393|ref|ZP_02040453.1| hypothetical protein RUMGNA_01217 [Ruminococcus gnavus ATCC 29149]
 gi|153796060|gb|EDN78480.1| hypothetical protein RUMGNA_01217 [Ruminococcus gnavus ATCC 29149]
          Length = 223

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 4/158 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ +S        +   + G DD V KP     + A++ A+ RR      + 
Sbjct: 67  IRQISSVPILFLSSASDNMNIVMAMNMGGDDFVEKPFDRNVLTAKIQALLRRAYSFTGQL 126

Query: 127 ETGPIR-VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                R V  +  D  V   GE   L + + +IL+ LM N GK V + +I   ++   DE
Sbjct: 127 NVLEYRDVILNLNDAAVTFHGERMELTKNDFKILQILMENAGKIVKRDRIMERLWE-SDE 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++N +  ++++LRKKL +    D + +K+ +GY I+
Sbjct: 186 FIDDNTLTVNMTRLRKKLESIGICDFIATKKGIGYVIE 223


>gi|84685172|ref|ZP_01013071.1| DNA-binding response regulator [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84666904|gb|EAQ13375.1| DNA-binding response regulator [Rhodobacterales bacterium HTCC2654]
          Length = 242

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 85/168 (50%), Gaps = 7/168 (4%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +L   R+    ++ P++ ++   S+   +D  D   DD + KP   RE+ AR+ A
Sbjct: 76  GSGTDLLR--RLRTGGNRTPVLMLTALVSVDNRVDALDLRADDYLVKPFDQRELEARLRA 133

Query: 115 IYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR     ++  + G +          + GE   L RRE  +LE L+    + ++K ++
Sbjct: 134 LVRREAAQKSDTIQLGALSYSPSQMSATLDGEKVTLTRREAALLELLVRFPEQYLSKERL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++   D  V  N +E +I++LRK+L  + +G   ++++R +GY I
Sbjct: 194 YDGLFAFDDADVGLNAIELYIARLRKRLAGSSVG---IETQRGVGYRI 238


>gi|313200933|ref|YP_004039591.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|312440249|gb|ADQ84355.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 211

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 19/174 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +L   R +R  + VP++ I+   +L+  +   D G DD + KP    E++AR+ A+ 
Sbjct: 49  GISILTTLRTMR--NPVPVMVITARDALEDRIQGLDIGADDYLVKPFELAELMARMRAVI 106

Query: 117 RRLK------VSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVA 169
           RR        +SN      PI      R+  +  G    L +RE  +LE L+   G  ++
Sbjct: 107 RRHAGDGMPLLSNGWLTLNPIT-----REVAMASGICHTLTKREYTLLETLLIRPGAILS 161

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++++ + +YG + E VE N +E  I  LRKKL N      + + R +G+ I  N
Sbjct: 162 RSELETRVYG-WGEEVESNAIEFLIHSLRKKLGNA----TIKNIRGVGWMISKN 210


>gi|229084948|ref|ZP_04217200.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228698264|gb|EEL50997.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 224

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 2/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R +  +PL+ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 62  ELCYELRRYYDIPLLMLTAKGETSQKVKGFQLGTDDYLVKPFDPLELVVRVKALLKRYQI 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++ + G + +     +  V  +V  LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 122 TVSQSIQVGNVLLNRKTFEVTVGEQVIILPLKEFELLFMLGSKIGRTCSREQLIEEVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D    E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 181 YDFEGNERTLDVHINRLREKFQKETASFAIKTIRGLGYRLE 221


>gi|116250926|ref|YP_766764.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255574|emb|CAK06654.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 229

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFP 148
            ++G DD + KP    E++ARV A+ RR  V   R   +   + +    R+    G+V  
Sbjct: 95  LEAGGDDYLVKPFAFSELMARVNALGRRPPVQEQRTVLKVADLELDLIRREARRAGQVIE 154

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207
           L  RE  +LE LM   G+ + KT +   ++   FD   + +VVE+HIS+LR K+      
Sbjct: 155 LQPREFTLLEVLMRGEGRVITKTMLLERVWDFHFDP--KTSVVETHISRLRAKVDKPFQI 212

Query: 208 DPVDSKRFLGYSI 220
             + + R  GYS+
Sbjct: 213 QLLHTVRNTGYSL 225


>gi|159897333|ref|YP_001543580.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890372|gb|ABX03452.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 49/243 (20%)

Query: 2   FVLIDDRALVKD---------GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            +L++D AL+ D         GY  L   DGV+  G +       L  + + D+  ++  
Sbjct: 4   ILLVEDEALLADTLRYNLEREGYTVLSASDGVT--GLD-------LARAEQPDLLILDVM 54

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L         + RI+R  + +P++ ++        +   + G DD V KP    E+LARV
Sbjct: 55  L--PKLDGFSVCRILRRETNIPIMMLTARQDEVDRIAGLELGADDYVIKPFSLGELLARV 112

Query: 113 AAIYRR------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
            AI RR            L  +N + +TG  RVF D  +         L ++E  +L  L
Sbjct: 113 RAILRRTDRQPTGVERELLTAANLKVDTGSRRVFRDNNE-------ITLAQKEFDLLVCL 165

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRF 215
           M NRG  +++  +   ++G +D   +   V+ H+    + LR K+  DP     + + R 
Sbjct: 166 MRNRGMALSRDLLLERVWG-YDFPGDSRTVDVHV----RWLREKVEVDPSNPIYIQTVRG 220

Query: 216 LGY 218
           +GY
Sbjct: 221 IGY 223


>gi|19745448|ref|NP_606584.1| CovR [Streptococcus pyogenes MGAS8232]
 gi|19747562|gb|AAL97083.1| CovR [Streptococcus pyogenes MGAS8232]
          Length = 228

 Score = 58.9 bits (141), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ A +RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +  PL +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|291522191|emb|CBK80484.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 234

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 19/183 (10%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           ++ K   + EL R+IR  S +P+I I+D  +    +   + G D  V  P +  E++A V
Sbjct: 54  MMMKSLNIYELIRVIRLKSNLPIILIADKENDANRILGLNLGADACVINPYNPLEVIAEV 113

Query: 113 AAIYRR---LKVSNN-RAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMAN 163
            A+ RR   L        ET  +RV     D E       G V  L   E +IL  LM +
Sbjct: 114 QAMLRRYYELGCGGRIPGETMVLRVGELVLDTEAFVLRKNGNVLSLTSAELKILAKLMRS 173

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGY 218
             +   KTQ+   I G + E  ++  +  HIS +R K+ +    DP + K     R LGY
Sbjct: 174 PKRVFTKTQLCECINGRYYEN-DDRTMMVHISNIRAKIED----DPANPKYIKTVRGLGY 228

Query: 219 SID 221
            ID
Sbjct: 229 KID 231


>gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator
           [uncultured prokaryote AT5]
          Length = 234

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +RA ++   +P+I ++        +    +G DD + KP    E+ ARV A+ R
Sbjct: 63  IELCRRLRARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRALLR 122

Query: 118 RLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R  +    A+    G + V  + +     G    L   E R+LE+LM   G+  ++ Q+ 
Sbjct: 123 R-ALPERLADVLSFGDLEVDREKKRVSRAGRSVDLGPTEYRLLEFLMERPGRVFSREQLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++G     ++E  V+ H+ +LRK L      DP+ + R  GY++D
Sbjct: 182 NGVWG-SQIYIDERTVDVHVGRLRKALNRGHETDPIRTVRGAGYALD 227


>gi|223674577|gb|ACN12984.1| PhoP [Streptomyces clavuligerus ATCC 27064]
          Length = 175

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 59  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+ 
Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLI 175


>gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 261

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 13/139 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV---------SNNRAETGPIRVFSDGRDPEVQG 144
           G DD + KP   RE++ARV AI RR  +         S++    G + +F D  +     
Sbjct: 119 GADDYMTKPFSPREVVARVKAILRRTVIHGQEEKQEHSDDSLVVGQLEIFPDRYEAYFAQ 178

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +   L  +E  +L YL   +G+ + + Q+ SA++  +D A +  +V+ HIS LR K+   
Sbjct: 179 KRLELTPKEFELLAYLAKYKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQD 237

Query: 205 LGFDPVDSK--RFLGYSID 221
               PV  K  R LGY ++
Sbjct: 238 TR-KPVYIKTIRGLGYKLE 255


>gi|145301166|ref|YP_001144007.1| two-component system blr regulon response regulator [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853938|gb|ABO92259.1| two-component system blr regulon response regulator [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 224

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 11/222 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D A + D  I     DG  +E F   +         R D   ++  L        EL
Sbjct: 8   LVEDEASIADTLIYALQTDGFEVEWFPLGQPLLTRLEQTRPDFLILDVGLPDISG--FEL 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            + +RA    PL+ ++        L   + G DD V KP   RE+ ARV  I RR    +
Sbjct: 66  CKQVRARCDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRR----S 121

Query: 124 NRAETGPIRVFSDGRDP---EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               T P ++ +   +       G+   L R E  +L+ LM   G+  ++ Q+   ++  
Sbjct: 122 QPVATQPSQLLALDEERARISFHGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWSG 181

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            +E+++   V++HI  +R KLR +    + + + R LGYS++
Sbjct: 182 AEESLDRT-VDTHIKTIRAKLRERDADANLILTHRGLGYSLE 222


>gi|145222334|ref|YP_001133012.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442767|ref|YP_004075646.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214820|gb|ABP44224.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315261070|gb|ADT97811.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 231

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 15/190 (7%)

Query: 23  GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75
           G+ L GF+   +++  E L+S+     +  +A ++     VL+   ++ A     + VP+
Sbjct: 24  GLRLSGFDVFTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 80

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPI 131
             +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+     GP+
Sbjct: 81  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATFSSETITVGPL 140

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+
Sbjct: 141 EVDIPGRRARVDGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 199

Query: 192 SHISKLRKKL 201
             I  LR+KL
Sbjct: 200 VFIGYLRRKL 209


>gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 256

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 19/165 (11%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNR 125
            P+I ++   + +  +     G DD + KP    E+LARV+A+ RR       +K ++N+
Sbjct: 88  TPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSGHADEVKTTDNQ 147

Query: 126 AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + ++ +  +  + G+   L  +E  +L YL    G  + +  + + ++G FD
Sbjct: 148 GNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRDDLMNVVWG-FD 206

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSIDWN 223
               +  V+ H+S LRKKL      DP    +DS R +GY +  N
Sbjct: 207 YIGGQRTVDVHVSSLRKKLE----LDPESAHIDSIRGVGYKLVVN 247


>gi|329906568|ref|ZP_08274423.1| response regulator transcription regulatory protein
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327547258|gb|EGF32107.1| response regulator transcription regulatory protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 222

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 2/141 (1%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R H  QVP++ ++   ++Q  +  F+ G DD + KP    E++AR+ A+ RR  
Sbjct: 61  EVVRRLRLHGMQVPVLLLTARDAIQDRVHGFELGADDYLVKPFSTLELVARLKALVRRSA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + + +  R   +         RE  +LEYLM    + V+K QI  AI   
Sbjct: 121 PKPIELSIGGLTLDTFARRAHIGTRSIEFSVREWAVLEYLMQQASRVVSKQQIIDAILP- 179

Query: 181 FDEAVEENVVESHISKLRKKL 201
           + E +  N VE ++S++R K+
Sbjct: 180 WGEDLTLNAVEVYVSRIRLKI 200


>gi|330819658|ref|YP_004348520.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327371653|gb|AEA63008.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 220

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           +P I I+   +L   +   D+G DD + KP    E+LAR+ A+ RR    + RA+T    
Sbjct: 73  LPAIVITARDALSDRIAGLDAGADDYLVKPFALEELLARIRAVNRR---HSGRAQTTLSA 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G +R+        + G+   L  +E  +L  LM + G  +++ Q    +Y  + E +E N
Sbjct: 130 GALRLDPVRHQVWLGGDEVTLSPKEFVMLHELMVDPGAVISREQFEERLYS-WGEEIESN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V+ HI  LRK    KLG   + + R +GY I
Sbjct: 189 AVQVHIHNLRK----KLGHVAILTVRGVGYRI 216


>gi|298481877|ref|ZP_07000067.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|298272099|gb|EFI13670.1| DNA-binding response regulator [Bacteroides sp. D22]
          Length = 229

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 94/193 (48%), Gaps = 20/193 (10%)

Query: 21  DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVP 74
           ++G  ++  NS E       + + D+S+    L+        G K+  + +  +  ++VP
Sbjct: 25  NEGYEVDTANSAE------EAMKMDISSYHLILLDVMMGEISGFKMANILKKDKKTAKVP 78

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-----RAETG 129
           +I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR   +       R    
Sbjct: 79  IIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTVTTETERVPERLTYQ 138

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEEN 188
            + +    +   +  E  PL ++E  IL  L+ N+G+  ++  I + I+   DE  V + 
Sbjct: 139 SLVIDITKKKVSIDDEEVPLTKKEFEILLLLVQNKGRVFSREDILARIWS--DEVYVLDR 196

Query: 189 VVESHISKLRKKL 201
            ++ +I++LRKK+
Sbjct: 197 TIDVNITRLRKKI 209


>gi|168178301|ref|ZP_02612965.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226948175|ref|YP_002803266.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182671135|gb|EDT83109.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226842363|gb|ACO85029.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 223

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 15/214 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L K+GY ++   DG           +  L    RE +  I + ++        L ++IR
Sbjct: 20  VLNKNGYKSIEAKDG-----------DSALDILYREYIDLIISDIMMPNMDGYTLTKLIR 68

Query: 69  -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RA 126
            +++ VP++ I+   +     + F  G DD + KPI   E++ RV A+ RR ++ N  R 
Sbjct: 69  ESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQIINERRI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G      D    +   +   LP++E  ++  L++   K   + Q+   I+G+  E  +
Sbjct: 129 VIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGIESET-D 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V+ HI++LR + ++   F+ + + R LGY +
Sbjct: 188 PRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220


>gi|197124506|ref|YP_002136457.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196174355|gb|ACG75328.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 230

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 6/133 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAET-GPIRVFSDGRDPEVQGEVF 147
           F+ G DD V KP   RE++ R+ A+ RR   + S    E+ GPIRV  +     V G   
Sbjct: 94  FELGADDYVTKPFSVRELVLRLKAVLRRAGARPSERPPESVGPIRVDVESHRAYVDGAEV 153

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E ++L  LM+  G+  ++ Q+   ++ +  E VE   V++H+ +LR+KL +  G 
Sbjct: 154 VLTPLEFKLLTTLMSRLGRVQSREQLLEDVWEMSAE-VETRTVDTHVKRLREKLGS--GR 210

Query: 208 DPVDSKRFLGYSI 220
           D +++ R +GY +
Sbjct: 211 DLLETVRGIGYRL 223


>gi|71733837|ref|YP_275879.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298487945|ref|ZP_07005984.1| Transcriptional regulatory protein rstA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554390|gb|AAZ33601.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157496|gb|EFH98577.1| Transcriptional regulatory protein rstA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323421|gb|EFW79509.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327618|gb|EFW83630.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330876275|gb|EGH10424.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330986740|gb|EGH84843.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 245

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 97/196 (49%), Gaps = 15/196 (7%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           VS+EG  +L     +  + + D+  ++  L   GE    + R +R     P++ ++    
Sbjct: 32  VSIEGNGALAAARII--AEQPDLVILDLML--PGEDGFSICRSVRDRYDGPILMLTARTD 87

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN------NRAETGPIRVFSDG 137
               +   D+G DD V KP+H R +LAR+ A+ RR +          R   GP+ V +  
Sbjct: 88  DTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRRLVFGPLVVDNAL 147

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R+  ++ +   L   E  +L  L+AN G+ +++ +IF+A+ G+  +  ++  ++  IS++
Sbjct: 148 REAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFTALRGVGYDG-QDRSIDVRISRI 206

Query: 198 RKKLRNKLGFDPVDSK 213
           R     K+G DP+  +
Sbjct: 207 RP----KIGDDPIHPR 218


>gi|81429063|ref|YP_396063.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104595|gb|AAD10258.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78610705|emb|CAI55756.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 224

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 20/205 (9%)

Query: 34  FEEW-LQSSAREDVSAI-EAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISD 80
            E+W L++   +D   I + FL  K   VL    LP        R IR  S+VP+I IS 
Sbjct: 21  LEKWQLKAIIPDDFDTIFDRFLTDKPHLVLLDINLPVYDGFYWCRKIREVSKVPIIFISS 80

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSD 136
             +    +   + G DD VNKP     ++A++ A+ RR    +  + +  E   + +   
Sbjct: 81  RSTNMDMVMSMNMGGDDFVNKPFSMEVLIAKINALLRRTYNYVDQNTDVIEHNGLLINLQ 140

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHIS 195
               +V   V  L + E ++L++LM   G+ V++ ++  A++   DE  V++N +  +I+
Sbjct: 141 SGGAQVGDTVVDLSKNEYKLLQFLMRQHGQIVSREKLLRALWD--DERFVDDNTLTVNIN 198

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220
           +LRKK+      D + +K   GY I
Sbjct: 199 RLRKKIEQAGLEDYIQTKIGQGYII 223


>gi|238793866|ref|ZP_04637486.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           intermedia ATCC 29909]
 gi|238726769|gb|EEQ18303.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           intermedia ATCC 29909]
          Length = 192

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 14/156 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I +S   S +  +   D+G DD ++KP    E+LARV    RR    +  +
Sbjct: 34  LRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGGS 90

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  P+  F+D       R     GE   L   E R+L  L+AN GK + + Q+ S ++G 
Sbjct: 91  QESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLSALLANAGKVITQRQLLSQVWG- 149

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
               VE N    ++      LR KL  DP   K  L
Sbjct: 150 -PNYVEHN---HYLRIYMGHLRQKLETDPTRPKHLL 181


>gi|238793011|ref|ZP_04636640.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia
           ATCC 29909]
 gi|238727611|gb|EEQ19136.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia
           ATCC 29909]
          Length = 220

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 6/155 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR +  S+N  
Sbjct: 68  RQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQGQSDNLV 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +   + +    +   +Q +   +  +E  IL  L+   G+ V +  +   +Y   D+ + 
Sbjct: 128 QQDDLSLNLSTQQVCLQDQPLEVTPKEFAILSRLIMRAGQTVNRELLQQDLYTWNDD-LG 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            N +E HI  LR+    KLG D + + R +GY ++
Sbjct: 187 SNTLEVHIHNLRR----KLGKDRIRTVRGIGYRLE 217


>gi|315646856|ref|ZP_07899971.1| hypothetical protein PVOR_15824 [Paenibacillus vortex V453]
 gi|315277786|gb|EFU41110.1| hypothetical protein PVOR_15824 [Paenibacillus vortex V453]
          Length = 232

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 10/150 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + + A   +P+  I+    +   +   + G DD + KP   RE++AR+  I RRL 
Sbjct: 63  LDICKKVTADYNIPIFMITAKSDITDKVLGLEFGADDYITKPFDLREVVARIRTILRRLD 122

Query: 121 VSNN--RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +N+  R E          I +  + R  +  G +  L  +E  +L  L  +RGK   ++
Sbjct: 123 QANHVEREEAQEVVIRFKCIEIIMEERLVKKDGSLIDLTPKEFDLLMTLYRHRGKIYTRS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++   ++G +D   +   V++HI +LRKKL
Sbjct: 183 ELLDLVWG-YDFMGDTRTVDTHIQRLRKKL 211


>gi|293402553|ref|ZP_06646688.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304067|gb|EFE45321.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 220

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 3/137 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I ++   ++ + ++   +G DD + KP    E+LAR+    R+   S+   
Sbjct: 66  IRKQSKVPIIILTAKDTVDSKVNLLSAGADDYLCKPFDLEELLARIQVQLRKSDNSSELL 125

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV- 185
           +   + + +   D  ++     L + E  ILE LM N  +   K +I+   Y   D    
Sbjct: 126 QFKELTLNNRAYDAFIKSYSLYLTKHEYYILELLMKNPKRVFTKQEIYE--YAWNDSYYG 183

Query: 186 EENVVESHISKLRKKLR 202
           ++  + +HIS +RKK++
Sbjct: 184 DDKTITTHISNIRKKIK 200


>gi|289628678|ref|ZP_06461632.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648390|ref|ZP_06479733.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866025|gb|EGH00734.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 245

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE    + R +R     P++ ++        +   D+G DD V KP+H R +LAR+
Sbjct: 57  LMLPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARI 116

Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR +          R   GP+ V +  R+  ++ +   L   E  +L  L+AN G+
Sbjct: 117 HALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 176

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            +++ +IF+A+ G+  +  ++  ++  IS++R     K+G DP+  +
Sbjct: 177 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 218


>gi|227820734|ref|YP_002824704.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium fredii NGR234]
 gi|227339733|gb|ACP23951.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium fredii NGR234]
          Length = 227

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +    +G DD V KP    E++ARV A+ R
Sbjct: 62  IELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K  V +     G I +  +      +     L   E R+LE+LM++ G+  +++Q+  
Sbjct: 122 RAKPEVLSTVLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226


>gi|225378771|ref|ZP_03755992.1| hypothetical protein ROSEINA2194_04441 [Roseburia inulinivorans DSM
           16841]
 gi|225209363|gb|EEG91717.1| hypothetical protein ROSEINA2194_04441 [Roseburia inulinivorans DSM
           16841]
          Length = 217

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119
           +E+ + +R  S++P+I ++     +T +  FD+  DD + KP     +L R+ A+ R R 
Sbjct: 60  IEVLKELRTFSELPVIMLTAVTDEETQVQTFDNLADDYICKPFSLILLLKRIEALLRARY 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  N       +  FS  R   +  +    P +E ++L  L+ N G+ V++ QI   I+G
Sbjct: 120 KTENTWKYKDAVVDFSGYRATYLGKDAAVTP-KEIKLLAVLLENAGQVVSRDQILDRIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +E+  + VV+ ++  LRKKL+     D + + + +GY ++
Sbjct: 179 -EEESPFDRVVDVYVKNLRKKLQ----LDCIITVKGVGYKLE 215


>gi|170078061|ref|YP_001734699.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885730|gb|ACA99443.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 222

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 15/154 (9%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P+I ++    L   +   + G DD + KP   +E+LARV A   RL+    RA   P+ +
Sbjct: 75  PIIILTARDDLDDKVTGLNLGADDYLGKPFSFKELLARVQA---RLRTFTPRATPEPMCL 131

Query: 134 FSDGRDPEV------QGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            +   + ++      QG+V+  LP RE  +LE L+ +  + +++ Q+   ++G +D    
Sbjct: 132 KTQTLELDLKARRVRQGDVWLELPTREFILLETLLRHPDQVLSRQQLLDQVWG-YDYDPG 190

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N+V+ +I  LRK    KLG D +++ R +GY +
Sbjct: 191 SNIVDVYIGYLRK----KLGSDLIETVRGIGYRL 220


>gi|284031439|ref|YP_003381370.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283810732|gb|ADB32571.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 236

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 25/210 (11%)

Query: 21  DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGIS 79
           D G ++E  +  E   W      +D  AI   L+  G    E+ R +RA     P++ ++
Sbjct: 22  DHGFTVELAHDGETGLW--KGREQDYDAIVLDLMLPGLSGDEVCRQLRAAGCWTPILILT 79

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR------- 132
                +      + G DD + KP  ++ ++AR+ A+ RR         T P R       
Sbjct: 80  ARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRR---------TAPARPVNLVVG 130

Query: 133 --VFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
             V    R    +G     L RRE  +LEYLM N G   +K +I   ++G  FD   E N
Sbjct: 131 DLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWGADFDR--EPN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VVE ++  LR+K+    G   + + R  GY
Sbjct: 189 VVEVYVGYLRRKIDQPFGTGSIRTVRGHGY 218


>gi|134294123|ref|YP_001117859.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137280|gb|ABO58394.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 220

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR      RA+
Sbjct: 68  RRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVTRR---HAGRAQ 124

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           T    GP+R+        +  +   L  +E  +L  LM + G  +++ Q    +Y  + E
Sbjct: 125 TTLAIGPLRLDPIKHLVWLNDDEVTLSPKEFVLLHELMRDPGAVISREQFEERLYS-WGE 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 184 EIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216


>gi|254228323|ref|ZP_04921750.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262394388|ref|YP_003286242.1| DNA-binding response regulator [Vibrio sp. Ex25]
 gi|151939129|gb|EDN57960.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262337982|gb|ACY51777.1| DNA-binding response regulator [Vibrio sp. Ex25]
          Length = 218

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 3/142 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR    ++P++ ++    ++  +   D G DD + KP    E+LAR+  + RR 
Sbjct: 60  LEVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQ 119

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             S     + G + +    +          L R E +IL  LM N G+  +K Q+  +++
Sbjct: 120 SGSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLH 179

Query: 179 GLFDEAVEENVVESHISKLRKK 200
           G +DE   +N +E HI  LRKK
Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKK 200


>gi|311280342|ref|YP_003942573.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749537|gb|ADO49289.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 223

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D +L+  G I     +G   +G  +        +++   +  ++  L    E  L+
Sbjct: 4   LVVEDDSLLLQGLILAMQSEGYVCDGVTTAHEAALCLANSHYSLMVLDLGL--PDEDGLD 61

Query: 63  -LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
            L RI R    +P++ ++   ++   ++  D+G DD + KP    E+ ARV A+ RR   
Sbjct: 62  FLSRIRREKFSLPVLILTARDTVNDRIEGLDTGADDYLVKPFALEELNARVRALLRRHNN 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N    G IR+    R   ++     L  +E  +L  LMA  G  V +  +++ IY  
Sbjct: 122 QGDNEISVGNIRINVTRRQVWLEETQLELTPKEYALLSRLMAKAGSPVHREILYNDIYS- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 181 WDNEPSTNTLEVHI----HNLRDKIGKSRIRTVRGFGYML 216


>gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 245

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+     +VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   +
Sbjct: 82  LGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGAA 141

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             R+E+    G + +  D  +    G+   L   E  +L YLM N  + ++K QI   ++
Sbjct: 142 AARSESLLTVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 201

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +D   + NVVE +IS LR+K+    G  P + ++R  GY I
Sbjct: 202 S-YDFGGQANVVELYISYLRRKI--DAGRSPMIHTRRGAGYLI 241


>gi|296274651|ref|YP_003657282.1| winged helix family two component transcriptional regulator
           [Arcobacter nitrofigilis DSM 7299]
 gi|296098825|gb|ADG94775.1| two component transcriptional regulator, winged helix family
           [Arcobacter nitrofigilis DSM 7299]
          Length = 222

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 2/162 (1%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + +RA     P+I ++   S++ T+   D G +D + KP    E+LAR+    R  
Sbjct: 60  IEVCKKLRAEKINTPIIMLTAKDSIEDTIKGLDIGANDYLPKPFSFSELLARIRVQLRAK 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    +   + +    +  +  GE   L  +E  +LEYL+ N+ K +++T + +++  
Sbjct: 120 DSTQTTLKIADLELDLLAKTAKRAGEDITLTAKEFSLLEYLIKNQNKVLSET-VLASMLN 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             DE+   N+V  +I +LR K+        + + R LG+ ID
Sbjct: 179 NMDESNISNLVNVYIYRLRNKIDKPYEKKLIKTIRGLGFKID 220


>gi|240139159|ref|YP_002963634.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
 gi|240009131|gb|ACS40357.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
          Length = 220

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131
            P++ ++   ++   +   D G DD + KP    E+ AR+ A+ RR    +    E G I
Sbjct: 73  TPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAAGRATASLEHGGI 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           R+        V G   P+ RRE  +L  LM       +K ++   +YG + E +E N VE
Sbjct: 133 RLDLGSLTVTVDGAQIPVSRREFMVLAALMERPSVLRSKAELEDRLYG-WQEEIESNAVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            H+      LR K+G   +++ R LGY
Sbjct: 192 VHV----HNLRAKIGKHAIETVRGLGY 214


>gi|207728005|ref|YP_002256399.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|207742406|ref|YP_002258798.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|300705088|ref|YP_003746691.1| response regulator, chey family [Ralstonia solanacearum CFBP2957]
 gi|206591249|emb|CAQ56861.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206593796|emb|CAQ60723.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|299072752|emb|CBJ44105.1| putative response regulator, CheY family [Ralstonia solanacearum
           CFBP2957]
          Length = 232

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+    + +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR    
Sbjct: 66  LKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGG 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP+     GR   +  +V  L  RE  +LE L++  G+ V+K Q+   + G +
Sbjct: 126 GATLVRHGPLAFDQVGRIAYIHDQVVDLSAREIGLLEILLSRAGRLVSKEQLVDHLCG-W 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E V  N +E ++ +LRKK+  ++    + + R LGY ++
Sbjct: 185 GEEVSNNAIEVYVHRLRKKI--EVDGIRIATVRGLGYCLE 222


>gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 224

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP++ ++    ++  +   D+G DD + KP    E+LARV A  RR+ 
Sbjct: 63  IEVARRIRKTSNVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRRV- 121

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                A TG IRV       +GR+    G    L  +E  +LE L  N GK   + +I  
Sbjct: 122 ---TPAITGEIRVADLVINLEGREVFRAGRRIELSNKEFELLELLAKNPGKVFTRYEIEE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NVV+ +I  LRKKL        + + R +GY +
Sbjct: 179 KVWPGYQGG--SNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 221


>gi|126731800|ref|ZP_01747604.1| two-component system regulatory protein [Sagittula stellata E-37]
 gi|126707627|gb|EBA06689.1| two-component system regulatory protein [Sagittula stellata E-37]
          Length = 223

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 17/227 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            VLI+D   +  G +    D G +++   +  E  ++L+S    D++ I+  L   G   
Sbjct: 3   IVLIEDNDSLAKGVVNALSDQGHAVDWLSDGFEGSQFLKSEG-ADLAIIDVNL--PGLSG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ R +R   S VP+I ++    L   +   D+G DD + KP    E+ AR+ A+    
Sbjct: 60  FEIVRTLREQGSTVPVILLTARTDLDDRITGLDAGADDYLGKPFEMGELAARIRAL---- 115

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIF 174
               +   TG +++     D   +  + P     LPRRE  + E L+ + G+ V+K +I 
Sbjct: 116 ARRKSDLRTGVVKIGHMRFDRTARVLIGPAGPIDLPRRELALFECLLDHSGRIVSKDRIS 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +YG+  + VE N VE  +S+LR+KL        + + R LGY +D
Sbjct: 176 DTLYGVGAD-VEANAVELLVSRLRRKLAETGA--TIRTARGLGYLLD 219


>gi|310642219|ref|YP_003946977.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309247169|gb|ADO56736.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 219

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKV 121
           L R IR+    P++ ++        +     G DD + KP    E+ AR+ A + R  + 
Sbjct: 62  LCREIRSKVDCPILFLTAKSMENDVMLGLGEGADDYIVKPFGAGELRARINAHLRRENRE 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N    G +     G++  VQ  V P  + E  I ++L  N G+  +K QI+ A++G F
Sbjct: 122 RRNVFCIGEVHFNLSGKEITVQNVVIPFTKSEYEICKFLALNWGQVFSKEQIYEAVFG-F 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D   +   +  HI  +R KL  K+   PV++   +GY
Sbjct: 181 DGDSDSATIVEHIKNIRAKL-GKVEVSPVETVWGIGY 216


>gi|300786954|ref|YP_003767245.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796468|gb|ADJ46843.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 223

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 104/215 (48%), Gaps = 12/215 (5%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQS----SAREDVSAIEAFLIGKGEKVLELPRIIR 68
           +GY+A     G + EG+ +   E   Q+    ++ E  +AI   ++   +      R+ +
Sbjct: 9   EGYMAKLLGRGFAEEGYATDIAESGSQALVTAASMEHDAAILDVMLPDVDGFELCARLRQ 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---R 125
           +   VP++ ++   S+   +   D+G DD + KP    E+ ARV A+ RR  +  +   R
Sbjct: 69  SGWHVPVLMLTARDSVSDRVKGLDAGADDYLCKPFSFVELCARVRALTRRAGIGRDVAVR 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G +R+    R          L   E  +LE LM ++ + + +++I   ++G +   V
Sbjct: 129 LQAGSLRLDPLSRRVWSGPSEVYLSATEFTLLELLMHHQDQVLTRSRILDQVWG-YRYPV 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             NVV+ ++    + LR+K+G D +++ R +GY +
Sbjct: 188 TSNVVDQYV----RYLRHKVGQDLIETVRGVGYRL 218


>gi|296444493|ref|ZP_06886458.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296258140|gb|EFH05202.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 220

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 13/152 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGP 130
            P++ +S   S    +   D+G DD + KP    E++AR+ ++ RR   S  RA   T  
Sbjct: 73  TPVLALSARGSWSERVQGIDAGADDYLPKPFRMEELMARLRSLIRR---STGRASSVTRN 129

Query: 131 IRVFSDGRDPEVQGEVFPLPRR--ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
            RV  D R  +++    P+     E R++ YLM  RG+ VA++++   IYG   +  + N
Sbjct: 130 GRVSLDERSMQIKLGDAPVEMTAIEYRLIAYLMHRRGEVVAQSELAEHIYG--HDQQQSN 187

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E  I ++RK    K+G   ++++R  GY +
Sbjct: 188 AIEVLIGRVRK----KIGAGFIETRRGFGYLV 215


>gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115]
 gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 222

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 15/212 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLELPRIIR 68
           L + GY  L   DG++  G           +SARE    +    +G  +    E+ R +R
Sbjct: 22  LEQAGYRVLTAADGIT--GL----------TSAREHAPDLVVLDLGLPDFDGAEVARRLR 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S VP+I ++   ++   ++  ++G DD + KP H  E++ARV  +  R +        
Sbjct: 70  KTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARV-KVQLRHQQHGEVISI 128

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +    R     G    L  +E  +L +L    G+  ++ +I   ++   +     N
Sbjct: 129 GALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWN-GELPSNSN 187

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           VV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 188 VVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219


>gi|120405958|ref|YP_955787.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958776|gb|ABM15781.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 233

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 15/190 (7%)

Query: 23  GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75
           G+ L GF+   +++  E L+S+     +  +A ++     VL+   ++ A     + VP+
Sbjct: 26  GLRLSGFDVYTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPI 131
             +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+     GP+
Sbjct: 83  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATFSSETITVGPL 142

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+
Sbjct: 143 EVDIPGRRARVDGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 201

Query: 192 SHISKLRKKL 201
             I  LR+KL
Sbjct: 202 VFIGYLRRKL 211


>gi|299144115|ref|ZP_07037195.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518600|gb|EFI42339.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 234

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 28/220 (12%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L    Y  ++  DG  +LE F S E    +      +V+  EA L             IR
Sbjct: 23  LKNSNYDVIYAFDGKDALEKFRSNEIHLVIMDLMMPNVTGEEAILK------------IR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-----KVSN 123
             S VP+I +S        +   + G DD + KP +  E++ARV +  RRL     K  N
Sbjct: 71  EKSYVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELMARVNSNIRRLYKYQSKEEN 130

Query: 124 NR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            R  E G I++ +  +   V GE   L   E +ILE LM N  +  +  +I+  ++   +
Sbjct: 131 ERYIEIGGIKLNTFEKTVFVDGEKVGLTSIEYKILELLMENPNRVFSIDEIYEKVWN--E 188

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            A+E   V  HI ++R+K+        +D K+ L   + W
Sbjct: 189 PAIEAKTVTVHIRRIREKIE-------IDPKKPLYLKVAW 221


>gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 233

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     +
Sbjct: 73  IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSI 132

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N++  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 133 EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIYEAVWK 192

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 193 EVFYKS--DNTVMVHITKIRDKI 213


>gi|224539015|ref|ZP_03679554.1| hypothetical protein BACCELL_03912 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519343|gb|EEF88448.1| hypothetical protein BACCELL_03912 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 225

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 6/152 (3%)

Query: 55  GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G G  +L EL R+ R+ S   ++ IS   SL   ++  + G DD + KP H  E+ ARV 
Sbjct: 57  GSGLDLLRELKRLHRSDS---VLIISAKDSLDDKVEGLELGADDYLTKPFHLAELNARVK 113

Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++ RR +   + + T G + ++ D R  EV G    L R+E  +L Y + N  + + K  
Sbjct: 114 SVIRRRQAKGDVSITMGNLLLYPDKRQVEVGGVPLQLNRKEFDLLYYFIVNPDRVINKMS 173

Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
           +  +++G   D+    + + S +  LR+KL+ 
Sbjct: 174 LAESVWGDNIDQVDSLDFIYSQVKNLRRKLKQ 205


>gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 237

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 13/212 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F  D    +   + + EE L+    E    I   L+      L
Sbjct: 5   ILVVDDEKPISD--IVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 122

Query: 122 SN---------NRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +N         NR  E G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 123 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIED 213


>gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 225

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 107/217 (49%), Gaps = 20/217 (9%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQ--SSARE---DVSAIEAFLIG-KGEKVLELPRIIRA 69
           +A F +  +  EG+N     + L   ++ARE   D+  ++  L G  G ++ +  R+ + 
Sbjct: 15  LAQFIELELKYEGYNITVVNDGLSGLTTARESNPDLILLDWMLPGISGLEICK--RLRQT 72

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
            S+VP+I ++    +   +   D+G DD + KP +  E+LARV A  RR     N+ E  
Sbjct: 73  GSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR-----NKEENP 127

Query: 130 PIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            +  F D        EVF       L  +E  +LEYLM++  + +++ QI   ++G +D 
Sbjct: 128 DLLQFLDLSLNRNTREVFRGNRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWG-YDF 186

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + N++E ++  LR KL  +     + + R +GY +
Sbjct: 187 MGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223


>gi|71736926|ref|YP_274577.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557479|gb|AAZ36690.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|330890080|gb|EGH22741.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 227

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ R +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 63  GRDGMDICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   ++     G ++V          G    L   E R+L     + G+  ++  +   
Sbjct: 123 RRTSSTDPHTPKG-LQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SHI  LR+KL     G DP+ S   +GY ++ 
Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227


>gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 224

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   E+   IR  S VP+I +S        +     G DD + KP    E++AR+ A+ 
Sbjct: 57  GEDGFEVCSRIRGKSNVPIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVL 116

Query: 117 RR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR   LK   +  + G I +    R   V G    L  +E  +L + + ++ + +++ Q+
Sbjct: 117 RRTGGLKSDMDSIQIGKITIDKKARKVTVAGIQVTLTLKEYELLLFFIEHKNQALSREQL 176

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              I+G+ D       V++HI  LR KL
Sbjct: 177 LEYIWGI-DYTGSLRTVDTHIKTLRMKL 203


>gi|294668444|ref|ZP_06733544.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309597|gb|EFE50840.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 232

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R     P+I ++        +   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 69  ELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQT 128

Query: 122 S-NNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                AE+ P  V+ D         QG   PL + E R+L  L+   G+  ++ ++ +A+
Sbjct: 129 QPAAEAESAP--VWHDDAPAYCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAM 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           +G  +   + + + +HI  LR KLR   +  + + +   LGYS +
Sbjct: 187 FG-GNRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSFN 230


>gi|171059157|ref|YP_001791506.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170776602|gb|ACB34741.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 241

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 5/170 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L + +R  S+VP+I ++        L   ++G DD + KP   RE++ARV
Sbjct: 58  LMLPGRDGLSLCQELRRFSEVPVIMLTARVEEVDRLIGLEAGADDYICKPFSPREVVARV 117

Query: 113 AAIYRRLK-VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            A+ RR K V  +   A + P+ +  +     + G    L   E R+L+ L A  G+  +
Sbjct: 118 KAVLRRHKRVPTDLVAAPSSPLVIDEERHRALLDGHELDLTPVEFRLLKALAAAPGRVFS 177

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           + Q+   ++     A+ +  ++SH+  LR+KL     G +P+ S   +GY
Sbjct: 178 RDQLLDKLHD-DTRALSDRTIDSHVKNLRRKLEQACPGLEPIRSIYGVGY 226


>gi|15836925|ref|NP_297613.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|9105147|gb|AAF83133.1|AE003885_4 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
          Length = 231

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 69/131 (52%), Gaps = 2/131 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
           + P++ ++   +++  +   + G DD ++KP   RE  AR   + RR + S +     G 
Sbjct: 72  RTPVLMLTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLRRNRGSASEVVRIGS 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
               +      + GE   LP RE R+LE L+A  G+ V K +I ++++  FD+    N +
Sbjct: 132 FEFDNAAHRIRLDGEPIKLPNREYRLLEILIARLGQIVGKDEIGNSLFN-FDDNAGPNAI 190

Query: 191 ESHISKLRKKL 201
           E ++++LR+KL
Sbjct: 191 ELYVARLRRKL 201


>gi|330988874|gb|EGH86977.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 227

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ R +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 63  GRDGMDICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   ++     G ++V          G    L   E R+L     + G+  ++  +   
Sbjct: 123 RRTSSTDPHTPKG-LQVDEAQYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SHI  LR+KL     G DP+ S   +GY ++ 
Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227


>gi|314986976|gb|EFT31068.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL005PA2]
          Length = 227

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 20/155 (12%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G KV+E    +R  S  P++ IS        ++  D+G DD V KP    E+LAR+  + 
Sbjct: 59  GVKVIE---AVRGWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLT 115

Query: 117 RRLKVSNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           RR  +  +  +  PI  F             RD    G    L   E R+LE L+ N G+
Sbjct: 116 RR--IGQDEVDEEPIVAFGSVWVDLAAHTVARD----GANVRLTPTEWRVLELLIRNEGR 169

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            V +  + S ++G  +   +   +  +IS+LRKKL
Sbjct: 170 LVTRQTMLSQVWG-SEHVTDTGYLRLYISQLRKKL 203


>gi|296139723|ref|YP_003646966.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296027857|gb|ADG78627.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 26/213 (12%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGI 78
           + L     L S  R+   A EAF   + + ++           +L R +R  S VP+I +
Sbjct: 22  DHLRLAGCLVSQHRDGARAWEAFQADRPDLLVLDRMLPGLSGDDLCRRVREVSTVPIIML 81

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSD 136
           +    L+  +D  +SG DD + KP   RE+  RV A  RR   S  +   + GP R+ + 
Sbjct: 82  TALDGLENRIDGLESGADDYLAKPFSLRELQLRVNAQLRRNTPSEVDLVIDAGPFRIDAA 141

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHIS 195
            R   +      L  RE  ++ YL+ N G+ V++ +I   ++   F +A   + V  H+ 
Sbjct: 142 HRRVWIGDREITLTTREYELMLYLVRNPGRVVSRDEILREVWRWGFGDA---STVTVHVR 198

Query: 196 KLRKKLRNKLGFDP-----VDSKRFLGYSIDWN 223
           +LR+K+ +    DP     + ++   GY   W 
Sbjct: 199 RLREKIES----DPRNPVYLQTEWGAGYRFGWG 227


>gi|289664195|ref|ZP_06485776.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668785|ref|ZP_06489860.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|325918854|ref|ZP_08180934.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325534945|gb|EGD06861.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 229

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 14/182 (7%)

Query: 33  EFEEWLQSSAREDVSAI-----EAFLIG---KGEKVLELPRIIRAHS---QVPLIGISDY 81
           EFE      ARE  +AI     +  L+     G   L+L R  R      ++P+I ++  
Sbjct: 26  EFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDLARRWRKEQLTREIPIIMLTAR 85

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141
                 +   ++GVDD V KP   RE+LAR+ A+ RR +  +        R+  DG    
Sbjct: 86  GEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVGRLRIDGAAHR 145

Query: 142 VQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
           V     P+P    E R+L + M +  +   +TQ+   ++G     VEE  ++ HI +LRK
Sbjct: 146 VFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERTIDVHIRRLRK 204

Query: 200 KL 201
            L
Sbjct: 205 TL 206


>gi|257453592|ref|ZP_05618882.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enhydrobacter aerosaccus SK60]
 gi|257449050|gb|EEV24003.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enhydrobacter aerosaccus SK60]
          Length = 232

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 101/209 (48%), Gaps = 20/209 (9%)

Query: 24  VSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPL 75
           + + GF+ L+  E  Q+       R ++  ++ +++  G   ++L R ++     S++P+
Sbjct: 23  LEMAGFDCLQASEVSQAHHLVVDHRPNLILLD-WMLPNGLSGIDLCRRLKKDEMLSEIPI 81

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135
           I ++        +   D+G DD + KP   RE+++R+ A+ RR   S+  +   PI V  
Sbjct: 82  IMLTAKGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRR---SSALSGEKPIDVGG 138

Query: 136 DGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
              DP  Q      +   +   E R+L + M++  +   +TQ+   ++G  +  VE+  +
Sbjct: 139 LSLDPASQRVSANNKAVDIGPTEYRLLAFFMSHPERAYTRTQLLDQVWG-GNVYVEDRTI 197

Query: 191 ESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           + HI +LRK L    GF D + + R  GY
Sbjct: 198 DVHIRRLRKVL-EPFGFADYIQTVRGTGY 225


>gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 233

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     +
Sbjct: 73  IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSI 132

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N++  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 133 EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIYEAVWK 192

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 193 EVFYKS--DNTVMVHITKIRDKI 213


>gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 342

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     +
Sbjct: 182 IREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNSSI 241

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY- 178
            +N++  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 242 GHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIYEAVWE 301

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 302 EVFYKS--DNTVMVHITKIRDKI 322


>gi|224584566|ref|YP_002638364.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469093|gb|ACN46923.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 224

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 6/163 (3%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +R   Q +P++ ++   ++   +   + G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LEVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  +     +F D     +QG+   L  RE+ +L  LM  R + V++ Q+F  ++ 
Sbjct: 120 AGQVHEVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           L DE   E+ +E +I +LRKKL+   G D  + + R LGY ++
Sbjct: 180 LNDEVSPES-IELYIHRLRKKLQ---GSDVRITTLRGLGYVLE 218


>gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 18/152 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR +S VP+I ++        +   + G DD V KP + +E++ARV AI RR  
Sbjct: 63  FEVCQQIRKYSPVPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILRRTA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-----------GEVFPLPRRERRILEYLMANRGKRVA 169
                 +   +R       PE++           G+   L  +ER +L  L ++ GK ++
Sbjct: 123 APQQYTQADILRF------PELEINMAEHTVIAFGKPVALANKEREVLWQLASHAGKVLS 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + Q+   ++  +    +   V++H+ +LRKKL
Sbjct: 177 REQLLELVWD-YSYCGDTRTVDTHVKRLRKKL 207


>gi|91203082|emb|CAJ72721.1| strongly similar to response regulator protein phoB [Candidatus
           Kuenenia stuttgartiensis]
          Length = 230

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 14/198 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L KDGY  +      +L+G  +LE    L  S R  +  ++  L G  G +V +  +   
Sbjct: 22  LEKDGYKTI-----TALDGEAALE----LSKSERPALIILDIMLPGMNGLEVCKRLKSDE 72

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
           A S   +I ++              G DD V KP   +E++ARV ++ RR K ++ +   
Sbjct: 73  ALSDAAIIMLTARGEEDDITRGLKLGADDYVTKPFSPKELVARVHSVLRRTKNASFKKEL 132

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E G +++  D  + ++  +V PL   E ++L  L    G+   + Q+  AI G+ +  +
Sbjct: 133 LEIGDLKINMDNYEVKIGHDVIPLTLTEFKLLCQLAGKPGRVFTRDQLIDAIAGV-ETII 191

Query: 186 EENVVESHISKLRKKLRN 203
            +  ++ HI+ LRKKL++
Sbjct: 192 IDRTIDVHIASLRKKLKS 209


>gi|302188250|ref|ZP_07264923.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|330944499|gb|EGH46487.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330953676|gb|EGH53936.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 220

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 13/166 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R +RA +  +P++ ++        +   D+G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LDLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR- 118

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S  RA    E   I +    +    QG   P+   E ++L  LM   GK V + ++ +
Sbjct: 119 --SQGRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +YG + + VE N +E  I  LRKKL  +L    + + R +GY ++
Sbjct: 177 TLYG-WQDKVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217


>gi|299137241|ref|ZP_07030423.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600646|gb|EFI56802.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 228

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 3/158 (1%)

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VS 122
           R +RA     P++ ++     +  ++  ++G DD + KP    E+LARV A+ RR K V+
Sbjct: 65  RQVRARGDSTPILVLTARSEREKVVELLNAGADDYLTKPFDLGELLARVKALIRRGKGVA 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +     G +RV +  +       +  L   E RI EYL+      V+K ++   +Y    
Sbjct: 125 HPLITFGRLRVNTIEQTVRCADLLVDLSPTEYRIFEYLIFRPRAIVSKRELLEHLYDYRW 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E    NV+E+H+S LRKKLR       V++ R  GY +
Sbjct: 185 EH-HSNVIEAHVSNLRKKLRAMGEEATVETIRGRGYRL 221


>gi|289549067|ref|YP_003474055.1| transcriptional regulator [Thermocrinis albus DSM 14484]
 gi|289182684|gb|ADC89928.1| two component transcriptional regulator, winged helix family
           [Thermocrinis albus DSM 14484]
          Length = 226

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 11/207 (5%)

Query: 18  LFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQVPL 75
           LFG  G S +   N  + +E L S    DV  ++  L   +GE++L + R       VP 
Sbjct: 19  LFGIKGWSTKVARNLYQAKEILSSFEIFDVCVLDLQLGRDRGEELLPILR----EKGVPT 74

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRV 133
           + ++    ++T ++  + G +D + KP    E++AR+  + RRLK S+       G ++V
Sbjct: 75  LILTVEDDVRTKVECLEKGAEDYLVKPFEPEELIARIGVLVRRLKRSSPSLTLSFGDLKV 134

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
                +  V+G+   LPR++  IL  LM N  K V    + S  + +  EA +   + +H
Sbjct: 135 DMKSMELTVKGQKVRLPRKQLLILIKLMENAEKPVTYQSLMSYAWDI-TEAPDMFSLRTH 193

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +RK L+ ++G D V S R +GY +
Sbjct: 194 VHNIRKILK-EVGLDIV-SYRGIGYML 218


>gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 230

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 22/156 (14%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S  P+I +S        +D    G DD + KP +  E++ARV A+ RR  +
Sbjct: 62  EVLRKIREKSSTPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALLRRSTI 121

Query: 122 SNNRAETGPI--------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            NN  E   +              +V+ D  D E+Q     L   E +++ + M NR K 
Sbjct: 122 FNNTKEESNLTIINKHLKLDEESCKVYKD--DVEIQ-----LTSFEYKLICFFMKNRNKV 174

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             K Q++  ++G      +E ++  +ISKLR+K+ +
Sbjct: 175 FTKGQLYEEVWGQCYLG-DEKIIMVYISKLREKIED 209


>gi|253996694|ref|YP_003048758.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983373|gb|ACT48231.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 235

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 16/166 (9%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +IR  SQ+P+I ++            + G DD V KP   RE+ AR+ AI RR K +   
Sbjct: 66  LIRKSSQIPVIMLTARGDESDRFFGLELGADDYVPKPCTPRELTARIRAILRRAKPTQES 125

Query: 126 AET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +T      G + ++ + R  E+ G    L   E  +LE L  N G  V+K ++     G
Sbjct: 126 LQTESQLTVGDLTIWPEQRRVELDGNTINLTSTEFNLLEVLAKNAGHVVSKKELAKLGMG 185

Query: 180 L----FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                FD +     ++ H+S +R+K+   K G D + +   +GY +
Sbjct: 186 KPLARFDRS-----IDVHMSSIRQKIGTLKDGRDCIQTVYRMGYQL 226


>gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
          Length = 234

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 20/217 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  +   DG           +E ++ +  E    +   ++  G+  LE+ R IR 
Sbjct: 22  LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122
            S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR        K  
Sbjct: 71  SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGSAEKDE 130

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     GPI +  +      + E   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 131 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
              +   V+  + +LR+K+ +       + ++R +GY
Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGY 226


>gi|330990141|ref|ZP_08314120.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp.
           SXCC-1]
 gi|329762749|gb|EGG79214.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp.
           SXCC-1]
          Length = 223

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 10/202 (4%)

Query: 22  DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQVPLIGISD 80
           DG +++ F +LE      ++   D   ++  L  G G  +L   R  R  S + ++  + 
Sbjct: 23  DGHAVDWFTTLEDARAAMATVDYDFMLLDLGLPDGSGRDLLRDIR--RTSSNIAILITTA 80

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGR 138
              +   +     G DD + KP    E++AR++A+ RR      R     G I +  + R
Sbjct: 81  EDQISDRIAGLSDGADDYIVKPYDLNELVARISAVARRYAAPRRRVCYRIGEIAIDRENR 140

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
                G    L  RE  I+E L  + G+  ++ QI +A+Y L D+ V+ N VE  IS+LR
Sbjct: 141 SVSCDGRALDLTAREWAIMELLSRSPGRIYSRQQIDTALYAL-DQDVDSNTVEVFISRLR 199

Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220
           KK+ NK+    + + R  GY +
Sbjct: 200 KKVGNKI----IRTVRGRGYCL 217


>gi|329734479|gb|EGG70791.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 221

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127
           S +P+I ++   +L T L  F  G  D + KP +  E++ R+  +  +     +S N  +
Sbjct: 69  SNIPIIFLTAKDNLDTRLKCFSLGAKDYLPKPFYMEELIIRIKNVLNQSHSQSLSPNIKK 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           T  + ++ D    +V      + ++E  I++ L  N     +K QI+ +I    ++    
Sbjct: 129 TKELIIYYDTYRIDVNNMTIDITKKEFEIIKLLSLNPQYYFSKEQIYDSIN--LNKTGNT 186

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            VV  HI K+RKKL     F+ +D+K  +GY
Sbjct: 187 QVVAEHIRKIRKKLSCYSRFEYIDTKWGVGY 217


>gi|262368892|ref|ZP_06062221.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262316570|gb|EEY97608.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 226

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I   +  +P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR    
Sbjct: 64  LKNIRSLYPTLPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGAL 123

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + ++       + +  D    + +G+   L  RE  IL  L+++  K  +KT +   +
Sbjct: 124 KQQKQSQTLSYAGLELDEDLHLAKYKGQTIDLSNREWAILIPLVSHPNKIFSKTNLEEKL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y L D  +  N +E +I  LR     KLG D + + R LGY +
Sbjct: 184 YDL-DSEINSNTIEVYIHHLRA----KLGKDFIRTIRGLGYRL 221


>gi|121598313|ref|YP_991950.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|134279900|ref|ZP_01766612.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|217419846|ref|ZP_03451352.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|238562735|ref|ZP_00439964.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242314238|ref|ZP_04813254.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|251767807|ref|ZP_04820262.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|121227123|gb|ABM49641.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|134249100|gb|EBA49182.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|217397150|gb|EEC37166.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|238522054|gb|EEP85501.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242137477|gb|EES23879.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|243061672|gb|EES43858.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 283

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 123 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 181

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 182 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 239

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 240 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 279


>gi|78049624|ref|YP_365799.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927313|ref|ZP_08188567.1| two component transcriptional regulator, winged helix family
           [Xanthomonas perforans 91-118]
 gi|78038054|emb|CAJ25799.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325542314|gb|EGD13802.1| two component transcriptional regulator, winged helix family
           [Xanthomonas perforans 91-118]
          Length = 221

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           GE  L + R +R+H    P+I ++    L   +   D+G DD + KP    E++AR+ A+
Sbjct: 56  GESGLSVIRFMRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAV 115

Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            RR   S  R       G + +    R     G+   L   E R+L  LM   G+ V K 
Sbjct: 116 TRR---SQGRVVPLLSHGDVCMDPGSRKVTKDGKWVALSAHEYRLLLALMERAGRVVTKD 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           Q+   +YG   E    N++  ++ +LR+KL + L
Sbjct: 173 QLEEGVYGGPSEG-GSNMIAVYVHQLRRKLGDAL 205


>gi|84501127|ref|ZP_00999362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola batsensis HTCC2597]
 gi|84391194|gb|EAQ03612.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola batsensis HTCC2597]
          Length = 228

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R ++  ++   VP+I +S        +   ++G DD V KP    E++ARV A  R
Sbjct: 64  IEVCRQLKMRTETRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRAQLR 123

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R + S    R E   I + S+      +G+V  L   E R+L   M   G+  ++ Q+  
Sbjct: 124 RTRPSTVGERLEYEGIVLDSETHRVTREGQVLKLGPTEFRLLTTFMEKPGRVWSREQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 184 RVWG-RDIYVDTRTVDVHIGRLRKALCQFGGDDPLRTVRGAGYAL 227


>gi|146295565|ref|YP_001179336.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409141|gb|ABP66145.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 223

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSN- 123
           IR  S+VP++ IS        +   + G DD + KP     + A+V A+ RR    VSN 
Sbjct: 67  IRKISKVPIMFISSASDNMNIIMAINMGGDDFIEKPFDLNVLTAKVHALIRRTYSFVSNI 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + +  +      Q +   L + E +IL+ LM N G+ V++ +I   ++   D 
Sbjct: 127 NLIEHKGVILNLNNTTLIHQNKKIELTKNEYKILQLLMENAGRVVSREEIMQHLWQ-SDS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            +++N +  +I++LRKKL  +LG +  + +K+ +GY I+
Sbjct: 186 FIDDNTLTVNITRLRKKLA-ELGLENFIKTKKGIGYIIE 223


>gi|329297433|ref|ZP_08254769.1| transcriptional regulatory protein TctD [Plautia stali symbiont]
          Length = 220

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 18/165 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R    VP++ ++   +LQ  +   ++G DD + KP    E+ AR+ A+ RR +  
Sbjct: 63  LARLRRRGQHVPVLLLTAQSALQQRVQGLNAGADDYLTKPF---ELEARLRALLRRSQGQ 119

Query: 123 NNRAET-GPIRVFSDGRDPE----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + ++ G +      RD E    +  +  PL  RE  +L  LM   G+ V++  ++   
Sbjct: 120 ATQTQSLGQLE-----RDAEGYFLLNHKPLPLTPREASVLSTLMQRPGRPVSRQHLYEQT 174

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           + L DEA  E+ +E ++ ++RKKL    G D  + + R LGYS++
Sbjct: 175 FTLADEASPES-IELYVHRVRKKLA---GSDVAIVTLRGLGYSLE 215


>gi|326332848|ref|ZP_08199106.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
 gi|325949406|gb|EGD41488.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
          Length = 229

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 12/168 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R I+A   VP++ ++        L     G DD + KP   RE++ARV A+ RR++
Sbjct: 64  LEVCRRIQAVRPVPVLMLTARVDEADVLVGLGVGADDYLTKPFRARELVARVNALLRRVE 123

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                       AE G +R+    R   V G    L   E  +L  L A+ G  V + ++
Sbjct: 124 RAAELAGAPRRTAEIGGLRMDPAARRVWVDGSEVRLTPTEFDLLVCLAADPGAVVTRERL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++G +++A     V+SH+    K LR K+G   V +   +GY+++
Sbjct: 184 LAEVWG-WNDASGTRTVDSHV----KGLRAKIGSARVRTVHGVGYALE 226


>gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 238

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 13/212 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F  D    +   + + EE L+    E    I   L+      L
Sbjct: 6   ILVVDDEKPISD--IVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKIDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 123

Query: 122 SN---------NRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +N         NR  E G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 124 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 184 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIED 214


>gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 14/139 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV---FSDGRDPEVQGEVFP-- 148
           G DD + KP   RE++ARV AI RR + +   A TG   V   F D R    + EVF   
Sbjct: 95  GADDYLTKPFSPREVIARVKAILRRFQ-NTPEATTGHQEVLLQFGDIRIYPEKYEVFCKD 153

Query: 149 ----LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
               L  +E  +L YL +++G+ + + Q+ +A++  +D   +  +V+ H+S LR+KL + 
Sbjct: 154 VKVELTPKEFELLNYLASHQGRVLTRDQLLNAVWN-YDFIGDSRIVDVHVSHLREKLEDD 212

Query: 205 LGFDP--VDSKRFLGYSID 221
              +P  + + R LGY ++
Sbjct: 213 TK-NPKYIKTVRGLGYKLE 230


>gi|188993478|ref|YP_001905488.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735238|emb|CAP53450.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 221

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 9/153 (5%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  L + R +R H    P+I ++    L   +   D+G DD + KP    E++ARV AI
Sbjct: 56  GDSGLTVIRYMRGHYDPTPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARVRAI 115

Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            RR   S+ R       G + V    R     G+   L   E R+L  LM   G+ V K 
Sbjct: 116 ARR---SHGRVVPLLTQGEVSVDPSSRKVTRNGKWVALSAHEYRLLLALMERAGRVVTKD 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           Q+   +YG   E    N++  ++ +LR+KL ++
Sbjct: 173 QLEEGVYGGPSEG-GSNMIAVYVHQLRRKLGDE 204


>gi|164688358|ref|ZP_02212386.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM
           16795]
 gi|164602771|gb|EDQ96236.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM
           16795]
          Length = 222

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + ++IR  S VP+I ++   S    +  FD   DD + KP  +  ++ R+ A+ RR K  
Sbjct: 64  MCKMIRKESDVPIIFVTALSSESDQIKGFDLLCDDYIVKPFSYNLLIKRIEAVLRRSKED 123

Query: 123 NNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     I++       E+ G++  L  +E  IL+ L+ N  + V + ++  +I+G 
Sbjct: 124 KAGVYLTFEKIKLNLKTYSAEIDGKIIDLTLKEFNILKSLIENYPQVVTREKLLDSIWG- 182

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +D   +  +V++HI  +RKK+
Sbjct: 183 YDYFGDTRIVDAHIKNIRKKI 203


>gi|110832893|ref|YP_691751.1| transcriptional regulator QseB [Alcanivorax borkumensis SK2]
 gi|110646004|emb|CAL15480.1| transcriptional regulatory protein qseb [Alcanivorax borkumensis
           SK2]
          Length = 220

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 107/234 (45%), Gaps = 35/234 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA-----IEAFLIGK 56
            +LI+D AL+ DG  A          G  ++ F     + AR+ ++A      +A ++  
Sbjct: 3   ILLIEDDALLGDGIQA----------GLQAMGFTVAWVTLARDGLAAWKSVDFDALVLDL 52

Query: 57  G----EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           G    E    L +   A   VP++ ++   ++Q  +D    G DD + KP    E+ AR+
Sbjct: 53  GLPDQEGSEALCQWREAGLTVPVLILTARDAVQDRIDGLQRGADDYLIKPFDLGELAARL 112

Query: 113 AAIYRRLK------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR +      + + R    P R      D EV+     L RRE  +L  L+ ++G+
Sbjct: 113 QALLRRTRGQARPFIEHGRLRVDPFRQQVWLADKEVE-----LQRREMALLLALLQSQGR 167

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   Q+   +YG  D  VE N +  HI  LR+KL +++    V++ R  GY +
Sbjct: 168 LLTADQLADRVYGWMD-GVESNALTVHIHNLRRKLDSRI----VETVRGGGYRL 216


>gi|21232781|ref|NP_638698.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767145|ref|YP_241907.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114601|gb|AAM42622.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572477|gb|AAY47887.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 233

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR +   +        
Sbjct: 73  TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQLGAF 132

Query: 133 VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           VF +      + G    LP RE R+LE L+   G+ V K +I + ++G FD+    N +E
Sbjct: 133 VFDNAAHTVSLDGVAIELPNREYRLLEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LR+KL
Sbjct: 192 LYVGRLRRKL 201


>gi|89076752|ref|ZP_01163030.1| putative transcriptional regulatory protein PhoP [Photobacterium
           sp. SKA34]
 gi|89047591|gb|EAR53203.1| putative transcriptional regulatory protein PhoP [Photobacterium
           sp. SKA34]
          Length = 224

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           ++P++ ++   + Q  +   ++G DD + KP    E++AR++A+ RR           G 
Sbjct: 72  RLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSAGFVKPEMTAGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           IRV    +   V   +  L   E  +LEYLM +  + V+K ++   +Y   D+  + N +
Sbjct: 132 IRVDLLAKQVYVHEILLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE--DQEGDPNTI 189

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           E  IS+LRKK       +P+ + R  GY  + N
Sbjct: 190 EVMISRLRKKFTKTGQENPISTIRGQGYIFELN 222


>gi|329577270|gb|EGG58733.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1467]
          Length = 229

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQ+P+I ++   +    +    +G DD V +P +  E++ARV +I RR +
Sbjct: 61  MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTEPFNPLEVMARVKSILRRSQ 120

Query: 121 VSNNRA-----ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
           +   +      E GP+ +  D  + + ++G+   L   E  IL YL+A+   RV +  +I
Sbjct: 121 MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGIL-YLLASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
           F  ++   +  V    V  H+S LR K+    G + V    + +GY ID
Sbjct: 180 FERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.]
          Length = 234

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 10/164 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I ++  + P++ ++    ++  +   D G DD + KP    E++ARV A++RR   S
Sbjct: 72  LQEIRKSGIKTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRR---S 128

Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + E+  ++VF     +  RD    G+   L  RE  ILE+L+ N+ + V++  +   +
Sbjct: 129 GGQTES-VLQVFDLKLDTVTRDVTKDGKPVELTPREFSILEFLLYNKNRVVSRFSLAEHV 187

Query: 178 YG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  FD     N ++ HI  LR K+ N      + + R +GY I
Sbjct: 188 WGDAFDPFSMSNFMDVHIKNLRHKIENFDNNRIIQTIRGVGYII 231


>gi|303256488|ref|ZP_07342502.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|330999059|ref|ZP_08322783.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
 gi|302859979|gb|EFL83056.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|329575646|gb|EGG57177.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
          Length = 231

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 81/157 (51%), Gaps = 5/157 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R   ++  +P+I ++        +   ++G DD V KP   RE++AR+ A+ RR K  + 
Sbjct: 70  RSYHSNESLPVIMLTARGQEDDRVRGLEAGADDYVTKPFSPRELVARIRAVIRR-KGGDA 128

Query: 125 RAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +T   GP+ + ++  +  V G+   L   E + L+    + G+  ++ Q+   ++G+ 
Sbjct: 129 LPDTLRVGPLEIDAERYEARVNGKPLRLSAVEFKFLQVFAKHPGRVYSRAQLIDKVWGVG 188

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + ++E  V+ H+ +LRK+L      D +++ R +GY
Sbjct: 189 AD-IDERTVDVHMLRLRKQLAGTAAADFIETVRGVGY 224


>gi|261253108|ref|ZP_05945681.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
 gi|260936499|gb|EEX92488.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
          Length = 219

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 22/217 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L K G++     DG+  +       EEW       DV  ++  L  K + +  L  I  
Sbjct: 19  TLEKTGWVPELSQDGI--DALYRATSEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S   +L   ++  ++G DD + KP    E+ AR+ A  RR   S N +  
Sbjct: 69  ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLRR--ASGNASPV 126

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             I   S D R  +V  QG+   L   E +++ Y M N  K +++T++   IY   FD  
Sbjct: 127 MQIGNLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + N +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 186 -DSNTIEVFIGRIRKKIAPKV----IKTVRGLGYQLN 217


>gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 228

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD + KP +  E++ARV +  RR K     +
Sbjct: 68  IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKKYNTSI 127

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++N++  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 128 NHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIYEAVWK 187

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208


>gi|255655551|ref|ZP_05400960.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296451542|ref|ZP_06893277.1| response regulator [Clostridium difficile NAP08]
 gi|296880109|ref|ZP_06904076.1| response regulator [Clostridium difficile NAP07]
 gi|296259607|gb|EFH06467.1| response regulator [Clostridium difficile NAP08]
 gi|296428834|gb|EFH14714.1| response regulator [Clostridium difficile NAP07]
          Length = 224

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 7/160 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           IR  S+VP+I IS   S    +   + G DD + KP     ++A+V A+ RR    V NN
Sbjct: 67  IRKISKVPIIFISSRNSNMDVIMGVNLGADDYIQKPFSIDVLVAKVNALLRRTYNFVDNN 126

Query: 125 RAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             +     V  D     +  E     L + E +IL  LM  +G+ V++ ++   ++   D
Sbjct: 127 SNQIIHNGVTLDLSTATINYEDNTIELTKNEIKILHELMKYKGQIVSRNKLMKKLWD-ND 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             V++N +  +++++R KL N++G  D +++KR LGY I+
Sbjct: 186 WFVDDNTLTVNVNRIRSKL-NEIGLEDFIETKRGLGYIIN 224


>gi|115359104|ref|YP_776242.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|170701807|ref|ZP_02892740.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171317681|ref|ZP_02906865.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172063886|ref|YP_001811537.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115284392|gb|ABI89908.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|170133286|gb|EDT01681.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171097156|gb|EDT42007.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171996403|gb|ACB67321.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 220

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LASLRRRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVNRR---H 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             RA+T    GP+R+        +  +   L  +E  +L  LM + G  +++ Q    +Y
Sbjct: 120 AGRAQTTLAIGPLRLDPVKHLVWLNDDEVTLSPKEFVLLHELMRDPGAVISREQFEERLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + E +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216


>gi|325840156|ref|ZP_08166964.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325490395|gb|EGC92718.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 218

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P+I ++   S    +D    G DD + KP    E+LAR+ A+ RR    +       I
Sbjct: 72  NIPVIFLTAKTSTMDKVDGLRLGADDYMVKPFEAIELLARIEAVLRRYGKVHKLLTYKNI 131

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V  + R+ E+ G V  L  +E  +   L+ N+   +++ Q+   ++G+ D   E   V+
Sbjct: 132 TVNDEKREVELNGNVVYLTVKEYDLFLTLLKNKNIALSREQLIEKVWGI-DYYGETRTVD 190

Query: 192 SHISKLRKKL 201
            HI+ LRKKL
Sbjct: 191 MHINALRKKL 200


>gi|262274262|ref|ZP_06052073.1| putative transcriptional regulatory protein PhoP [Grimontia
           hollisae CIP 101886]
 gi|262220825|gb|EEY72139.1| putative transcriptional regulatory protein PhoP [Grimontia
           hollisae CIP 101886]
          Length = 224

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNN 124
           I RA  ++P++ ++   + Q  +   D+G DD + KP    E++AR+ A+ RR       
Sbjct: 66  IRRADIRMPILILTGRANWQDKVSGLDAGADDYLVKPFQKEELVARLNALVRRSAGFVKP 125

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               G I +    +   + G+   L   E  +LEYL+    + V+K ++   +Y   D+ 
Sbjct: 126 EIRAGKITIDLLAKKVSIDGQSVELTAFEYDLLEYLVRYNRQVVSKQRLLDVLYQ--DQE 183

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + N +E  +S+LRKKL      +P+ + R  GY
Sbjct: 184 GDPNTIEVMMSRLRKKLTQAGQENPISTVRGQGY 217


>gi|302525129|ref|ZP_07277471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302434024|gb|EFL05840.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 232

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  + VP+I +S        +   D+G DD V KP    E+LAR+ A  RR  V+    
Sbjct: 72  LRGWTTVPIIVLSARGDSADKVQALDAGADDYVTKPFGMDELLARLRAAVRRSSVAGTDG 131

Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +TG   +    +    +G    L + E  +LE L+ NRG+ VA+ Q+   ++G  
Sbjct: 132 AEAVVDTGSFTIDLAAKKVLREGREVHLTKTEWGVLELLVRNRGRLVAQKQLLHEVWGPS 191

Query: 182 DEAVEENVVESHISKLRKKL 201
            E  E + +  ++++LR+KL
Sbjct: 192 YE-TESHYLRVYLAQLRRKL 210


>gi|238752450|ref|ZP_04613926.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC
           43380]
 gi|238709299|gb|EEQ01541.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC
           43380]
          Length = 241

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 2/150 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +
Sbjct: 73  ISICREIRRFSNVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQ 132

Query: 121 VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +A      +  + R     QG +  L   E R+L+ L    G   ++ Q+ + +Y 
Sbjct: 133 QQPEQAGDTATLIIDESRFQASYQGHMLELTPAEFRLLKILATQPGHVFSREQLLNNLYD 192

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            +   V +  ++SHI  LR+KL    G  P
Sbjct: 193 DY-RVVTDRTIDSHIKNLRRKLEALDGEKP 221


>gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 248

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 109/225 (48%), Gaps = 12/225 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKG 57
           + V+ DD A+ +   I L G      EGF+++   +  E + +++ ED   I   ++   
Sbjct: 29  ILVVDDDPAIAEMLMIVLQG------EGFDTVVVGDGAEAVTAASNEDPDLILLDVMLPS 82

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIY 116
              +++ R IR  S VP++ +S        +   +SG DD +NKP   +E++ARV A + 
Sbjct: 83  MNGVDVCRAIRKTSGVPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQLR 142

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR + + +    G + +   G   +  G+  PL   E  +L  L +   + + + ++   
Sbjct: 143 RREQATGDTIHVGDLVIDVPGHIVKRDGKEIPLTPIEFDLLTQLASRPKQVLTREELLRE 202

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++G + +  +  V+  HI++LR K+ ++      + + R +GY I
Sbjct: 203 VWG-YKQPTDTRVLNVHINRLRIKVEKDHKNPKLIQAVRGVGYKI 246


>gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 228

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 19/221 (8%)

Query: 18  LFGDDGVSLEGFNSLEFE-------------EWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           L  +D  +L  F SLE +             E L+++  +D   I   L+       E+ 
Sbjct: 6   LIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVT 65

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
           R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +   
Sbjct: 66  RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIETE 125

Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N+     + +    R      +   L +RE  +L  LM+N  + + + ++ S ++ 
Sbjct: 126 KKAPNQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMSNMNRVMTREELLSNVWK 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 186 -YDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225


>gi|16761566|ref|NP_457183.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143047|ref|NP_806389.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213163396|ref|ZP_03349106.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427815|ref|ZP_03360565.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213582713|ref|ZP_03364539.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213650085|ref|ZP_03380138.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289824413|ref|ZP_06544002.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25300975|pir||AF0838 transcription regulator tctD [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503867|emb|CAD05893.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138680|gb|AAO70249.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 224

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 19/218 (8%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65
           ++ALV++G    F  D V    F+ L  +  L S    ++ A+    I   G   LE+ +
Sbjct: 17  EKALVQNG----FAVDCV----FDGLAADHLLHS----EMYALMVLDINMPGMDGLEVVQ 64

Query: 66  IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
            +R   Q +P++ ++   ++   +   + G DD + KP    E+ AR+ A+ RR     +
Sbjct: 65  RLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGLVH 124

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             +     +F D     +QG+   L  RE+ +L  LM  R + V++ Q+F  ++ L DE 
Sbjct: 125 EVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEV 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             E+ +E +I +LRKKL+   G D  + + R LGY ++
Sbjct: 185 SPES-IELYIHRLRKKLQ---GSDVRITTLRGLGYVLE 218


>gi|315646922|ref|ZP_07900037.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277852|gb|EFU41176.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           E L  +  ED S I   L   G    EL R IR + +VP++ +S        +  F+ G 
Sbjct: 37  EGLHLALNEDYSLIVVDLQLPGMNGFELCRQIRKNKEVPILIVSAKNEEIDKIRAFNLGA 96

Query: 96  DDVVNKPIHHREILARVAAI---YRRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVF 147
           DD + KP    E++AR  A    Y+RL      V N       + +    R   V+ +  
Sbjct: 97  DDYITKPFSPSELVARAKAHLMRYKRLMGKQETVQNAEIHIRGLVIDKSARRVYVRNQEV 156

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
               RE  +LE+L ++  +  +K ++F  I+G+ D + +   V  H+ KLR+KL
Sbjct: 157 VFTTREFNLLEFLASHPNRVFSKNELFERIWGM-DSSGDIATVTVHVRKLREKL 209


>gi|315039000|ref|YP_004032568.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|312277133|gb|ADQ59773.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|327184133|gb|AEA32580.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 233

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122
           R IR  S VP+I ++   S        D G+DD + KP    E+ AR+  I RRLK +  
Sbjct: 69  RRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKKTQE 128

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N A T     GP+++     +     E   L  +E  ++  LM +  K  ++ ++   +
Sbjct: 129 QNAAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELLDVV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSI 220
           +G +D   + N V+ +I    + +RNKLG +P    + + R LGY +
Sbjct: 189 WG-YDFVGQTNTVDVYI----RTIRNKLG-EPYKKLIKTVRGLGYCL 229


>gi|289648792|ref|ZP_06480135.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. aesculi str. 2250]
          Length = 220

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 24/218 (11%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL  +GY   + +DG+S    ++L  E +        +  ++ F         +L R +R
Sbjct: 19  ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           A    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR   S  RA 
Sbjct: 68  AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   I +    +    QG   P+   E ++L  LM   GK V + ++ + +YG + +
Sbjct: 125 PLLEDAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE N +E  I  LRKKL  +L    + + R +GY ++
Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217


>gi|255523046|ref|ZP_05390018.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255513161|gb|EET89429.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 223

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SN 123
           IR  S+VP+I IS        +   + G DD ++KP     ++A+V A+ RR      + 
Sbjct: 67  IRKLSKVPIIFISSMSDSMNIIMAVNMGGDDFISKPFDLNILVAKVQALIRRTYSFGGTM 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + +  +    E +     L + E +IL+ L+ N GK + +  I + ++   D 
Sbjct: 127 DIIEHNGVVLNLNNATIEYENNKIELTKNEFKILQILLENVGKAIPRDVIMTRLWE-SDS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++N +  ++++LRKKL +    D V +K+ +GY ++
Sbjct: 186 YIDDNTLTVNVTRLRKKLSDAGICDFVKTKKGIGYVVE 223


>gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 238

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L + + IR  S VP+I ++        +   D G DD + KP +  E+ AR+ AI RR  
Sbjct: 71  LSVCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNS 130

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  +N  + G +++  D R   +  +   L  +E  +LE L  N GK  ++  + 
Sbjct: 131 SITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLL 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
            A++G  D   +   V+ H+ +LR+K+ N
Sbjct: 191 KAVWGQ-DYTGDARTVDVHMRRLREKIEN 218


>gi|170746673|ref|YP_001752933.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653195|gb|ACB22250.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 226

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 4/143 (2%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRA 126
           A    P++ +S   ++   +D   +G DD + KP    E+ ARV A+ RR   +   N  
Sbjct: 70  AKVSTPVLILSALSAVNERVDGLRAGGDDYLAKPFEFIELTARVDALARRKMAAEAVNEL 129

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G +R+    R     G    L  +E  I+E+LM N G  V++  IF +++G +    +
Sbjct: 130 VVGDLRLDLIERVLYCAGREIELLPKEFAIIEFLMQNAGTLVSRKMIFESVWG-YSFNHQ 188

Query: 187 ENVVESHISKLRKKLRNKLGFDP 209
            +V++ HI K+RKKL +  G +P
Sbjct: 189 SSVIDVHIGKIRKKL-DPDGLNP 210


>gi|71737739|ref|YP_275609.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298487905|ref|ZP_07005945.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71558292|gb|AAZ37503.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298157630|gb|EFH98710.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325046|gb|EFW81115.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320327849|gb|EFW83855.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330988750|gb|EGH86853.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 220

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 24/218 (11%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL  +GY   + +DG+S    ++L  E +        +  ++ F         +L R +R
Sbjct: 19  ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           A    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR   S  RA 
Sbjct: 68  AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   I +    +    QG   P+   E ++L  LM   GK V + ++ + +YG + +
Sbjct: 125 PLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE N +E  I  LRKKL  +L    + + R +GY ++
Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217


>gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193]
 gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193]
          Length = 224

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 3/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S+VP++ ++        +   + G DD V KP   RE++AR+  I +R + 
Sbjct: 61  EVCRRIRQRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKRSQK 120

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        G + +       ++ G+   L  RE+ IL  L+ +  +  ++ ++ S I+G
Sbjct: 121 AQASTSLTHGELSLDPRAHRCQINGQEIALTAREQGILALLLQDPAQIRSRAELISQIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + V +  ++SH+  LR KL    G D +++   +G  +
Sbjct: 181 AGSQ-VSDRTLDSHLRNLRAKLEQAGGNDLIETVHAVGIRL 220


>gi|241895394|ref|ZP_04782690.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241871368|gb|EER75119.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 233

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 13/167 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR HSQ+P+I ++    +   +     G DD + KP    E+LAR+    R  + +++
Sbjct: 68  RRIRKHSQMPVIMLTARDYIGDKVAGLTGGADDYMTKPFEVEELLARIEVSLRHSQKTDH 127

Query: 125 RAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +A+    G + V +  +      ++ PL +RE  +L  L+ N  +  ++  +   ++G+ 
Sbjct: 128 QAKIYTVGDLTVDTTTKRVSRHNKIIPLTQREYELLVVLVMNEDEACSRDGLLDEVWGVD 187

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSIDWN 223
            E  + N+++ ++    + LR+K+  DP + K     R +GY +  N
Sbjct: 188 FEG-QPNILDVYV----RNLRSKIDADPSNQKLIHTVRGVGYMLSQN 229


>gi|289424225|ref|ZP_06426008.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428903|ref|ZP_06430583.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129921|ref|YP_003580584.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|289154922|gb|EFD03604.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289157904|gb|EFD06127.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291375523|gb|ADD99377.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|313765549|gb|EFS36913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772902|gb|EFS38868.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793076|gb|EFS41143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802476|gb|EFS43698.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806491|gb|EFS44998.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313811042|gb|EFS48756.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814457|gb|EFS52171.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815050|gb|EFS52764.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817360|gb|EFS55074.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821896|gb|EFS59610.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824208|gb|EFS61922.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826576|gb|EFS64290.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313828760|gb|EFS66474.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831805|gb|EFS69519.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834651|gb|EFS72365.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313840118|gb|EFS77832.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314915811|gb|EFS79642.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917083|gb|EFS80914.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921359|gb|EFS85190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926710|gb|EFS90541.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931318|gb|EFS95149.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314954858|gb|EFS99264.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958794|gb|EFT02896.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961083|gb|EFT05184.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964489|gb|EFT08589.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314969588|gb|EFT13686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974654|gb|EFT18749.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977150|gb|EFT21245.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314980434|gb|EFT24528.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314985752|gb|EFT29844.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987275|gb|EFT31366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989181|gb|EFT33272.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078496|gb|EFT50527.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082041|gb|EFT54017.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315082819|gb|EFT54795.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086175|gb|EFT58151.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315087760|gb|EFT59736.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315097486|gb|EFT69462.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099937|gb|EFT71913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101750|gb|EFT73726.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315110294|gb|EFT82270.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327331428|gb|EGE73167.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA2]
 gi|327333415|gb|EGE75135.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA3]
 gi|327334938|gb|EGE76649.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL097PA1]
 gi|327445567|gb|EGE92221.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327447187|gb|EGE93841.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449779|gb|EGE96433.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327454628|gb|EGF01283.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456700|gb|EGF03355.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327457024|gb|EGF03679.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328755683|gb|EGF69299.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328756463|gb|EGF70079.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328758807|gb|EGF72423.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328761843|gb|EGF75355.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL099PA1]
 gi|332674761|gb|AEE71577.1| sensory transduction protein RegX [Propionibacterium acnes 266]
          Length = 226

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 14/166 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R    V +I ++   S    +   + G DD V KP  HRE++AR+ A+ RR   
Sbjct: 62  EVCRQLRQRGNVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGP 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++VS +  E   +R+  +  +  V G    L  +E  +LE L+ N G+ + +  +   +
Sbjct: 122 EIEVSPDVLEESGVRMDVERHEVSVGGTAVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +G  D   +   ++ HI +LR K+ +    DP     + + R LGY
Sbjct: 182 WG-ADYVGDTKTLDVHIKRLRAKIED----DPSRPVRIITVRGLGY 222


>gi|109453282|gb|ABG34121.1| PhoP [Salmonella enterica subsp. salamae]
          Length = 213

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQDSGHQVDAPEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
             E  E + ++  + +LRKK++ +   D + +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITT 212


>gi|120553067|ref|YP_957418.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120322916|gb|ABM17231.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 221

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 106/220 (48%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDV-SAIEAFLIGKGEKV 60
            +L++D  L+ +G +      G S++  +S    + L    +ED  +A+    +  G  +
Sbjct: 3   LLLVEDDRLLAEGLVRQLEKAGFSIDHTSSAREAQIL--GEQEDYRAAVLDLGLPDGNGL 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R      + P++ ++     Q  ++   +G DD + KP    E++AR+ A+ RR +
Sbjct: 61  EVLKRWRSKLVECPVLVLTARGDWQDKVNGLKAGADDYLAKPFQTEELIARINALIRRSE 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +++ + G   +  + +     +G    L   E R+L  LM+  G   +K Q+   +Y
Sbjct: 121 GRVHSQVKAGGFELDENRQSLRTEEGAEHALTGTEFRLLRCLMSRPGHIFSKEQLMEQLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            L DE+  ENV+E++I +LRK     +G + + ++R  GY
Sbjct: 181 NL-DESPSENVIEAYIRRLRK----LVGNETITTRRGQGY 215


>gi|257455665|ref|ZP_05620894.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60]
 gi|257446948|gb|EEV21962.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60]
          Length = 225

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A + DG +       + ++ F   +  E        D   ++   + +G+ + 
Sbjct: 4   ILLIEDDATIADGIVKGLSQQNMMVDWFADAKLGEMAIHEGVFDAVLLD-LTLPRGDGMT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L    +     P++ I+   ++   +   ++G DD + KP    E++AR+ A+ RR   
Sbjct: 63  ILANWRQQKIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALIRR--- 119

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  R++T    G +      +    QG+   L  +E  +LE  ++      ++  +   +
Sbjct: 120 SQGRSQTEIRYGDVSYLPQQQQVFYQGKWVDLTAKEITVLEQFISYPNLVHSRASLEDKL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           YG + + +E N +E HI  LRKKL N    D + ++R +GY ++
Sbjct: 180 YG-WQQDIESNAIEVHIHNLRKKLGN----DFILTRRGIGYYLN 218


>gi|251771943|gb|EES52515.1| two component transcriptional regulator, winged helix family
           [Leptospirillum ferrodiazotrophum]
          Length = 269

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 14/159 (8%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN------R 125
           +VP + +++    +T +   ++G D+V++ P   RE LAR+ A+ RR +   N      R
Sbjct: 110 KVPAMVLTEGTDPETRVRVLEAGADEVLSVPCPPRETLARIRALLRRDESKENNPYAPAR 169

Query: 126 AETGPIRVFSDGRD---PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            E G + V +D  +    E + +V PL   E RIL +L+ + GK   + ++ S ++G   
Sbjct: 170 YEVGELIVDTDRHEVVWQEKRIQVTPL---EFRILVHLVRDPGKVYPREELMSLLWGEHW 226

Query: 183 EAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           E VE++ +  HI  LRKKL R +    P+++ R +GY I
Sbjct: 227 E-VEDHNLSVHIHGLRKKLARPEDDRTPIETVRGVGYRI 264


>gi|58039171|ref|YP_191135.1| phosphate regulon response regulator PhoB [Gluconobacter oxydans
           621H]
 gi|58001585|gb|AAW60479.1| Phosphate regulon response regulator PhoB [Gluconobacter oxydans
           621H]
          Length = 240

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 6/184 (3%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDD 97
           +AR D   ++  L   G   L++ R IRA+     VP++ ++   + Q  +   D+G DD
Sbjct: 52  TARPDAVVLDWML--PGLSGLDVCRRIRANPALRDVPVLLLTARSAEQDAIRGLDTGADD 109

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157
            + KP     + AR+ A+ RR + S +R     I +  +    E  G +  L   E R+L
Sbjct: 110 YLMKPCSIDTLDARLRALLRRHQSSYDRLSFADITLDPETHRVERAGRMLSLGPTEYRLL 169

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           + L+ N  K  ++  +   I+G  +  VE   ++ HI +LRK +      D V + R  G
Sbjct: 170 DLLIRNPRKVFSRENLLRRIWG-QNIHVEIRTIDVHIRRLRKAINGPGEVDLVRTVRAAG 228

Query: 218 YSID 221
           Y++D
Sbjct: 229 YALD 232


>gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 228

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     +
Sbjct: 68  IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSI 127

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N++  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 128 EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIYEAVWK 187

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208


>gi|323487407|ref|ZP_08092704.1| DNA-binding response regulator DltR [Clostridium symbiosum
           WAL-14163]
 gi|323399264|gb|EGA91665.1| DNA-binding response regulator DltR [Clostridium symbiosum
           WAL-14163]
          Length = 225

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 11/162 (6%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P I  +    L   ++  D+G DD + KP    E+LAR+ A+ RRL     R E
Sbjct: 68  RRKIQTPAIFSTALDGLNDRINGLDAGADDYIAKPYAIEELLARIRAVTRRL----GRIE 123

Query: 128 TGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 F D       R+   Q     L ++E  +LEY   N G+ + +  I   ++G  
Sbjct: 124 EECTLTFEDLVFLPEHRELRYQNASVSLSKKESSLLEYFFRNPGRTLNREVILGYVWGAS 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            E VE+  ++++I  LR++LR       + +   +GY ++ N
Sbjct: 184 SE-VEDGNLDNYIYFLRRRLRTLNAPVKITTVHGVGYRLEKN 224


>gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
 gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
          Length = 228

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 19/221 (8%)

Query: 18  LFGDDGVSLEGFNSLEFE-------------EWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           L  +D  +L  F SLE +             E L+++  +D   I   L+       E+ 
Sbjct: 6   LIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVT 65

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
           R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +   
Sbjct: 66  RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIETE 125

Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N+     + +    R      +   L +RE  +L  LM N  + + + ++ S ++ 
Sbjct: 126 KKAPNQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSNVWK 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 186 -YDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225


>gi|310778503|ref|YP_003966836.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309747826|gb|ADO82488.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 219

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 22/204 (10%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQ-VPLIGIS 79
           L+ E +L   A +   AIE F   K + V+           ++ R IR+  + VP+I ++
Sbjct: 22  LKKEGYLVIEAEDGEQAIEFFFNNKIDLVILDIMMPKLDGWDVCREIRSERKNVPIIMLT 81

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDG 137
                   L  +    D+ V KP+  + ++A+V A+ RR   +NN +    G + +    
Sbjct: 82  AKGDEDDILKGYKLKTDEYVTKPVSLKILMAKVKALLRR---NNNDSIINMGKLIINDSS 138

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
               + GE+  L  RE  +L Y + N+G  +++ +I ++++G +D   +   V+S I ++
Sbjct: 139 HVVTLDGEILELSPREYEMLLYFVINKGIALSREKIITSLWG-YDYEGDRRAVDSQIKRI 197

Query: 198 RKKLRNKLGFDPVDSKRFLGYSID 221
           RK    KLG + +++ R +GY  +
Sbjct: 198 RK----KLGGEYIETVRGVGYKFE 217


>gi|294782843|ref|ZP_06748169.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA]
 gi|294481484|gb|EFG29259.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA]
          Length = 227

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 18/200 (9%)

Query: 18  LFGDDGVSLEGFNSLEFEE--WLQSSAREDVSAIEAFLIGKGEKVL-----------ELP 64
           L  +D  +++   SLE +   ++ SSA +    +E F     + VL           EL 
Sbjct: 8   LIIEDDKNIQRLLSLELKHKGYMVSSAYDGEEGLELFTKNSYDVVLLDLMLPKKSGKELC 67

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +  R  +  P+I  +   ++   ++  D G +D + KP    E+LAR+  + R  + S++
Sbjct: 68  QEFRKLTDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNRENSSD 127

Query: 125 RAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +       +  D    +V   Q E+  L + E  ILEY M NR    ++ +I + ++G +
Sbjct: 128 KQIYFENEIKLDLTTKKVFINQKEI-SLTKTEFLILEYFMKNRAISCSREKILTGVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKL 201
           D   EE +V+ +I+ LRKK+
Sbjct: 186 DFDGEEKIVDVYINSLRKKM 205


>gi|160878516|ref|YP_001557484.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427182|gb|ABX40745.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E  ++     + P+I +S    L + +D    G DD + KP   +E+L R+    RR+  
Sbjct: 62  EFLKLFNKKERTPVIVLSAKDELDSKVDVLSCGADDYITKPFQLKELLVRIEVALRRVNR 121

Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  ++ ET       D        +  + G +  L ++E +ILE L+ +  K  +K +I
Sbjct: 122 NIEKSQDETNQCLSHKDLLLNRSSYEVRLAGNLISLTKQEYKILELLLLHPNKVFSKQEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +  +    E+  +  HIS +R KL+     D +D+   +G+ +
Sbjct: 182 YNYAWEEYFIG-EDKTINVHISNIRMKLKKVTEDDYIDTVWGIGFKL 227


>gi|50841610|ref|YP_054837.1| two-component response regulator, KdpE [Propionibacterium acnes
           KPA171202]
 gi|282853167|ref|ZP_06262504.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes J139]
 gi|289424544|ref|ZP_06426327.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes SK187]
 gi|289427413|ref|ZP_06429126.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes J165]
 gi|295129651|ref|YP_003580314.1| DNA-binding response regulator KdpE [Propionibacterium acnes SK137]
 gi|50839212|gb|AAT81879.1| two-component response regulator, KdpE [Propionibacterium acnes
           KPA171202]
 gi|282582620|gb|EFB88000.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes J139]
 gi|289155241|gb|EFD03923.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes SK187]
 gi|289159343|gb|EFD07534.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes J165]
 gi|291375781|gb|ADD99635.1| DNA-binding response regulator KdpE [Propionibacterium acnes SK137]
 gi|313771208|gb|EFS37174.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL074PA1]
 gi|313806990|gb|EFS45488.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL087PA2]
 gi|313811899|gb|EFS49613.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL083PA1]
 gi|313814092|gb|EFS51806.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL025PA1]
 gi|313817774|gb|EFS55488.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL046PA2]
 gi|313821400|gb|EFS59114.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL036PA1]
 gi|313824655|gb|EFS62369.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL036PA2]
 gi|313826324|gb|EFS64038.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL063PA1]
 gi|313828890|gb|EFS66604.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL063PA2]
 gi|313832090|gb|EFS69804.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL007PA1]
 gi|313832894|gb|EFS70608.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL056PA1]
 gi|313839754|gb|EFS77468.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL086PA1]
 gi|314922627|gb|EFS86458.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL001PA1]
 gi|314926441|gb|EFS90272.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL036PA3]
 gi|314961462|gb|EFT05563.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL002PA2]
 gi|314969258|gb|EFT13356.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL037PA1]
 gi|314975328|gb|EFT19423.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL053PA1]
 gi|314977744|gb|EFT21839.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL045PA1]
 gi|314980122|gb|EFT24216.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL072PA2]
 gi|314982686|gb|EFT26778.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL110PA3]
 gi|314985281|gb|EFT29373.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL005PA1]
 gi|314990529|gb|EFT34620.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL005PA3]
 gi|315081718|gb|EFT53694.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL078PA1]
 gi|315082908|gb|EFT54884.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL027PA2]
 gi|315086743|gb|EFT58719.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL002PA3]
 gi|315088146|gb|EFT60122.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL072PA1]
 gi|315091346|gb|EFT63322.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL110PA4]
 gi|315097031|gb|EFT69007.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL038PA1]
 gi|315104999|gb|EFT76975.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL050PA2]
 gi|315107591|gb|EFT79567.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL030PA1]
 gi|315109998|gb|EFT81974.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL030PA2]
 gi|327332628|gb|EGE74363.1| KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL096PA2]
 gi|327333805|gb|EGE75522.1| KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL096PA3]
 gi|327334683|gb|EGE76394.1| KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL097PA1]
 gi|327444730|gb|EGE91384.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL013PA2]
 gi|327446589|gb|EGE93243.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL043PA2]
 gi|327448969|gb|EGE95623.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL043PA1]
 gi|328757844|gb|EGF71460.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL020PA1]
 gi|328759713|gb|EGF73310.1| KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL099PA1]
 gi|332674521|gb|AEE71337.1| KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes 266]
          Length = 227

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G KV+E    +R  S  P++ IS        ++  D+G DD V KP    E+LAR+  + 
Sbjct: 59  GVKVIE---AVRGWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLT 115

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR  +  +  +  PI  F               G    L   E R+LE L+ N G+ V +
Sbjct: 116 RR--IGQDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTR 173

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             + S ++G  +   +   +  +IS+LRKKL
Sbjct: 174 QTMLSQVWG-SEHVTDTGYLRLYISQLRKKL 203


>gi|77404656|ref|YP_345230.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77390306|gb|ABA81489.1| two component transcriptional regulator, winged-helix family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 219

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 6/150 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGP 130
             P+I ++    +   +D  ++G DD + KP    E+ AR+ ++ RR   + N     G 
Sbjct: 72  STPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYGGNPNPVVRLGA 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
             V    R    +G   PL  RE  +LE  +A   + ++K Q+   ++  F+  +E N +
Sbjct: 132 FEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS-FEAEIESNAI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++S+LR+KL + +    +++ R LGY +
Sbjct: 191 EVYVSRLRRKLDHSV----IETVRGLGYRL 216


>gi|322831824|ref|YP_004211851.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321167025|gb|ADW72724.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 227

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 23/216 (10%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D  + L G  GV  EG  S E+   +      D+S I+              R +R +S+
Sbjct: 26  DASLVLTGKAGV--EGAMSGEYTAMILDIMLPDMSGIDVL------------RQVRKNSR 71

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNRA 126
           +P+I ++        +   + G DD + KP + RE++AR+ A+ RR++        N+  
Sbjct: 72  LPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRVEEQQESHSDNSSV 131

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +    R  E +G  F L   E  +LE L+ +  + V+K ++     G   EA +
Sbjct: 132 NYGDLTLNPATRSSEWRGVPFDLTASEFNLLELLLRSPERVVSKDELSEKGLGRPREAYD 191

Query: 187 ENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSI 220
            + ++ HIS +R+KL +  G D   +++ R +GY I
Sbjct: 192 RS-IDVHISNIRQKLGSLEGGDILTIETVRSIGYRI 226


>gi|313792774|gb|EFS40855.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL110PA1]
 gi|313803438|gb|EFS44620.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL110PA2]
 gi|314964147|gb|EFT08247.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL082PA1]
 gi|315078949|gb|EFT50967.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL053PA2]
 gi|327457282|gb|EGF03937.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL092PA1]
          Length = 227

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G KV+E    +R  S  P++ IS        ++  D+G DD V KP    E+LAR+  + 
Sbjct: 59  GVKVIE---AVRGWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLT 115

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR  +  +  +  PI  F               G    L   E R+LE L+ N G+ V +
Sbjct: 116 RR--IGQDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTR 173

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             + S ++G  +   +   +  +IS+LRKKL
Sbjct: 174 QTMLSQVWG-SEHVTDTGYLRLYISQLRKKL 203


>gi|307709734|ref|ZP_07646185.1| nisin biosynthesis regulatory protein nisR [Streptococcus mitis
           SK564]
 gi|307619436|gb|EFN98561.1| nisin biosynthesis regulatory protein nisR [Streptococcus mitis
           SK564]
          Length = 228

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 4/145 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           LE+ ++IR    VP+  I+     +  +   ++G DD + KP   +E+LARV    R   
Sbjct: 60  LEICQMIREQITVPICFITAKDMDEDLVAGINAGADDYIMKPFSMQELLARVKMHLRREE 119

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R+K + ++ + G + +++D ++  V  +   L RRE  I+  L +N  K  +  +I++ +
Sbjct: 120 RIKGNVHQIKIGKLILYTDSKELFVNDDKIALTRREFDIVNLLASNPSKIYSIEEIYNYL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           Y    EA+  +V E +I ++R+KL+
Sbjct: 180 YPQSSEALLRSVSE-YIYQIRQKLK 203


>gi|285017381|ref|YP_003375092.1| two-component system regulatory protein phob [Xanthomonas
           albilineans GPE PC73]
 gi|283472599|emb|CBA15104.1| probable two-component system regulatory protein phob [Xanthomonas
           albilineans]
          Length = 229

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 20/174 (11%)

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   LEL R  R  +   +VP+I ++        +   ++GVDD V KP   RE+LAR+ 
Sbjct: 58  GTSGLELARRWRKDAMTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIR 117

Query: 114 AIYRRLK---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           A+ RR +         V N R +    RVF+ G  P       P+   E R+L + M + 
Sbjct: 118 AVMRRTREDDEDGSVSVGNLRIDGAAHRVFA-GDAP------VPIGPTEYRLLHFFMTHP 170

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +  ++ Q+   ++G     VEE  ++ HI +LRK L      + V + R  GY
Sbjct: 171 ERVYSRAQLLDHVWG-GSVYVEERTIDVHIRRLRKTLEPFAVENMVQTVRGSGY 223


>gi|271499378|ref|YP_003332403.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342933|gb|ACZ75698.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 226

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 14/170 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +R +  +P+I ++        +   + G DD V KP + RE++AR+ A+ RR +
Sbjct: 60  IDVLRQVRRNHAIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + ++E       G + V    R  E +G+ F L   E  +LE LM +  + V K ++ 
Sbjct: 120 DKSEKSEDAGTVSYGDLVVCPSTRSSEWRGKAFDLTASEFNLLELLMRSSSRVVTKDELS 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD----PVDSKRFLGYSI 220
               G   EA + + V+ HIS +R+KL      D     +++ R +GY I
Sbjct: 180 EKCLGRRREAYDRS-VDVHISNIRQKL---AALDECNLTIETVRSVGYRI 225


>gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 239

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 22/202 (10%)

Query: 27  EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---HSQVPLIGISD 80
           EG++ L   + EE L+     DV      ++  G    EL R +R+   H   P+I +S 
Sbjct: 26  EGYDVLKAYDAEEALKIVEDNDVDMFIVDIMLPGMDGFELVRNLRSTEKHRHTPVIFLSA 85

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140
                  +   + G DD + KP   RE LAR+ AI+RR++ S    E  P ++ +  RD 
Sbjct: 86  KSEEFDKVLGLELGADDYITKPFSVREALARIRAIFRRIQQSVQAKEERPKKITA--RDL 143

Query: 141 E---------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           E         V+G++  L   E  +L +L  N GK  ++  +   ++G +D   +   V+
Sbjct: 144 EIDTEKYEVRVRGKLVNLTPLEFELLRFLAENEGKVFSRDVLLDKLWG-YDYYGDTRTVD 202

Query: 192 SHISKLRKKLRNKLGFDPVDSK 213
            HI +LR K+      DP + K
Sbjct: 203 VHIRRLRTKIEE----DPSNPK 220


>gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
 gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
          Length = 342

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     +
Sbjct: 182 IREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNSSI 241

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY- 178
            +N++  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 242 GHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIYEAVWE 301

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 302 EVFYKS--DNTVMVHITKIRDKI 322


>gi|149909235|ref|ZP_01897892.1| DNA-binding response regulator BaeR [Moritella sp. PE36]
 gi|149807759|gb|EDM67705.1| DNA-binding response regulator BaeR [Moritella sp. PE36]
          Length = 230

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 10/178 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G+  + L + IR  S VP+I ++        L   + G DD + KP   RE++ARV
Sbjct: 53  LMLPGKDGITLCKEIRQFSAVPIIMVTARVDEIDRLIGLELGADDYICKPFSPREVVARV 112

Query: 113 AAIYRRLKV---SNNRAETGPIRVFSDGRDPE-VQGEVFPLPRR----ERRILEYLMANR 164
            A+ RR +    S ++++T          DPE  Q  VF +P      E  +L+ L    
Sbjct: 113 KAVLRRTQSQTQSLDKSDTIKSTPKVVELDPEKYQARVFGIPVELTAIEFNLLQILAKEP 172

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           G+  +++Q+ + +Y      V E  ++SHI KLRKKL + K   + V S   +GY ++
Sbjct: 173 GRIYSRSQLMNHVYH-DHRVVSERTIDSHIKKLRKKLNDIKPDMELVQSVYSVGYKLE 229


>gi|55822759|ref|YP_141200.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55738744|gb|AAV62385.1| response regulator (homolog to ciaR Spn), truncated [Streptococcus
           thermophilus CNRZ1066]
          Length = 173

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P++ ++   SL      F+ GVDD + KP +  E+  R+ A+ +R  K   N    G +
Sbjct: 27  TPVLIMTAKESLDDKGHGFELGVDDYLTKPFYLEELKMRIQALLKRSGKFDQNTFSFGDV 86

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V        V  +   L  +E  +L Y + N+   + K+QIF  ++G FD     +VVE
Sbjct: 87  CVNLSTNSTYVGDKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRLWG-FDSDTNVSVVE 145

Query: 192 SHISKLRKKLR 202
            ++SK+RKKL+
Sbjct: 146 VYVSKIRKKLK 156


>gi|116618821|ref|YP_819192.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097668|gb|ABJ62819.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 229

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 76/148 (51%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R   + P+I ++   S+   +   D G DD + KP    E+LAR+ ++ RR+ 
Sbjct: 61  LEVARRLREVKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIA 120

Query: 121 V---SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   +N++  +      +R+  + R      ++  L +RE  +L  L+ N     ++ Q+
Sbjct: 121 IETETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G FD  VE NVV+ +I  LR K+
Sbjct: 181 LKEVWG-FDSEVETNVVDVYIRYLRNKI 207


>gi|313764887|gb|EFS36251.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL013PA1]
 gi|313815549|gb|EFS53263.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL059PA1]
 gi|314916347|gb|EFS80178.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL005PA4]
 gi|314917344|gb|EFS81175.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL050PA1]
 gi|314921948|gb|EFS85779.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL050PA3]
 gi|314930787|gb|EFS94618.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL067PA1]
 gi|314955091|gb|EFS99496.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL027PA1]
 gi|314959289|gb|EFT03391.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL002PA1]
 gi|315099638|gb|EFT71614.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL059PA2]
 gi|315102131|gb|EFT74107.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL046PA1]
 gi|327454381|gb|EGF01036.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL087PA3]
 gi|327456448|gb|EGF03103.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL083PA2]
 gi|328756141|gb|EGF69757.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL087PA1]
 gi|328758521|gb|EGF72137.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL025PA2]
          Length = 227

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G KV+E    +R  S  P++ IS        ++  D+G DD V KP    E+LAR+  + 
Sbjct: 59  GVKVIE---AVRGWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLT 115

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR  +  +  +  PI  F               G    L   E R+LE L+ N G+ V +
Sbjct: 116 RR--IGQDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTR 173

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             + S ++G  +   +   +  +IS+LRKKL
Sbjct: 174 QTMLSQVWG-SEHVTDTGYLRLYISQLRKKL 203


>gi|306819902|ref|ZP_07453555.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552059|gb|EFM39997.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 244

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R IR  S VP+I +S        +   + G DD + KP   RE++ RV  I +R+ 
Sbjct: 71  LELCREIRKTSDVPIIFVSARSEELDRILGLELGADDYLAKPFSPRELMVRVKTILKRVS 130

Query: 121 VSNN------RAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            + N      + E   ++V     + D +  + +    P   +E  ILEYL+ N    ++
Sbjct: 131 QNANADSKDKKEEPKVLKVSDFEMYPDIKLAKYKNTEIPFTIKEFDILEYLLRNISTPLS 190

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + QI + I+G   +  E N V+  I ++RKKL+       + +   +GY ID N
Sbjct: 191 REQITAKIWGNDRDGYERN-VDDAIKRVRKKLKEYRVNLEIRTVWGIGYRIDVN 243


>gi|295093634|emb|CBK82725.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 224

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 5/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--G 129
           +VP+I ++   +    +   D G DD + KP    E+++RV A+ RR +   +  +   G
Sbjct: 76  RVPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRRSRALQDDKQLVLG 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I + S+ R+  V GE+  L  +E  +L+ LM N G  + +  I S ++G  D   E   
Sbjct: 136 DITLDSERREVHVGGELCELTFKEFELLKLLMVNAGIVLHRDTIMSDVWGT-DYEGESRT 194

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ HI  LR+KL      + + + R +GY ++
Sbjct: 195 LDMHIKTLRQKLGE--AGNMIKTVRNVGYKME 224


>gi|268610267|ref|ZP_06143994.1| two-component response regulator [Ruminococcus flavefaciens FD-1]
          Length = 223

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R +R H   P++ ++     +  +  F SG DD + KP    E+ AR+AA  RR  
Sbjct: 60  FEVCRKVRDHVSCPILFLTARIEDEDKIQGFASGGDDYILKPFSLDELGARIAAHIRR-- 117

Query: 121 VSNNRAETGPIRVFSDG------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +       +R F D       +    + E   L ++E  I+E L  N G+   K +I+
Sbjct: 118 -DHRSTAASNVRFFGDTVVNYTEKTVSCKDEQLDLTKKEYGIIELLSLNAGQVFDKERIY 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             I+G +D   + +V+  HI ++R KL
Sbjct: 177 EKIWG-YDAEGDSSVIAEHIRRIRAKL 202


>gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD + KP +  E++ARV +  RR K     +
Sbjct: 68  IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKKYNTSI 127

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++N++  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 128 NHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIYEAVWK 187

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208


>gi|170761841|ref|YP_001786289.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408830|gb|ACA57241.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 223

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L ++IR +++ VP++ I+   +     + F  G DD + KPI   E++ RV A+ RR ++
Sbjct: 63  LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQI 122

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N  R   G      D    +   +   LP++E  ++  L++   K   + Q+   I+G+
Sbjct: 123 INERRIVIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGI 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E  +   V+ HI++LR + ++   F+ + + R LGY +
Sbjct: 183 ESET-DPRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220


>gi|220912472|ref|YP_002487781.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219859350|gb|ACL39692.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 228

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA S +P++ +S        ++  D+G DD V KP    E+LAR+ A+ RR   +  
Sbjct: 65  RGIRAWSDLPIVVLSARQGSADKVEALDAGADDYVTKPFGLDELLARLRAVERRSAHTPA 124

Query: 125 RA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-L 180
                +TG + +          G+   L  RE  +L+ L+ NRGK + + Q+   ++G  
Sbjct: 125 GVAVIQTGNLLIDLGAATVTRNGKRVHLTPREWDVLQLLVTNRGKLITQRQLLQTVWGPA 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL-----GYSID 221
           + E  E   +  ++++LR+KL      DP   K  +     GY  D
Sbjct: 185 YQE--ETQYLRVYMAQLRRKLET----DPAHPKHLITAAGQGYRFD 224


>gi|166030722|ref|ZP_02233551.1| hypothetical protein DORFOR_00396 [Dorea formicigenerans ATCC
           27755]
 gi|166029514|gb|EDR48271.1| hypothetical protein DORFOR_00396 [Dorea formicigenerans ATCC
           27755]
          Length = 220

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 3/158 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   +  +  P  + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD    ++ + +HI  +R K  +   + P+ +   +GY
Sbjct: 180 FDSESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216


>gi|86356687|ref|YP_468579.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86280789|gb|ABC89852.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 230

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 5/155 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
           A    P + ++    +   ++  ++G DD + KP    E+LARV A+ RR  V   R   
Sbjct: 72  AKVGTPALFLTSIGGVDDRVEGLEAGGDDYLTKPFAFSELLARVNALGRRPPVQEQRTVL 131

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           +   + +    R+    G+   L  RE  +LE LM   G+ + KT +   ++   FD   
Sbjct: 132 KVADLELDLIRREARRAGQAIELQPREFTLLEVLMRGEGRVITKTMLLERVWDFHFDP-- 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +VVE+HIS+LR K+        + + R  GYS+
Sbjct: 190 KTSVVETHISRLRAKVDKPFQAQLLHTIRNTGYSL 224


>gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P++ +S   S    +  F  G DD V KP   +E+LAR+ A  RR K 
Sbjct: 61  EVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120

Query: 121 -VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  N  +   +  F +       R+  V+G    L ++E  +LE L  + G+  +K QI
Sbjct: 121 AILLNEEKKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +  ++G FD   +   V  HI  +R K+    GFDP
Sbjct: 181 YEKVWG-FDAEGDTTTVTEHIKNIRAKIG---GFDP 212


>gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 227

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 7/167 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  + +R ++QVP++ +S        +    +G DD + KP +  E+ ARV A+ RR  
Sbjct: 61  LEFCKYVRKNNQVPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALLRRAN 120

Query: 121 V-SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +  +A+     G + +         +G    L  RE  IL  L  NRG+  A  +IF 
Sbjct: 121 YKTTGKADDVLYIGSVAIDKRSHGVTAEGSEIKLTAREFEILYLLAKNRGRVYASEEIFE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++    E   + V+  HIS +R+KL   L G   + +   +GY I+
Sbjct: 181 KVWNEPGEGSNKTVM-VHISNIREKLEAALPGESVIQTVWGVGYKIE 226


>gi|300716267|ref|YP_003741070.1| DNA-binding transcriptional regulator [Erwinia billingiae Eb661]
 gi|299062103|emb|CAX59219.1| DNA-binding transcriptional regulator [Erwinia billingiae Eb661]
          Length = 222

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132
           P++ ++     Q  ++  ++G DD V KP H  E++AR+ A+ RR   +++      P +
Sbjct: 74  PILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVVARMQALMRRNSGLASQIISLAPFQ 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V    R+  +      L   E  I+E L+ N GK V+K  +   +Y    E  E + ++ 
Sbjct: 134 VDLSRRELTINDTQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLYP-DAELRESHTIDV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +LRKK++ +   D + + R  GY  D
Sbjct: 193 LMGRLRKKMQAEHPLDVITTVRGQGYRFD 221


>gi|226303939|ref|YP_002763897.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183054|dbj|BAH31158.1| probable OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 231

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 5/135 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--- 127
           ++VP+  +S   S+   +   ++G DD + KP    E++AR+ A+ RR   +    +   
Sbjct: 75  NEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTTRATPSVDHPI 134

Query: 128 -TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             GP+ V   G    + G    L +RE  +L  L  + G  +++ Q+   ++G +D A +
Sbjct: 135 TVGPLTVDLRGHRAHIDGGRIELTKREFDLLSVLAEHAGVVLSRAQLLRLVWG-YDFAAD 193

Query: 187 ENVVESHISKLRKKL 201
            NVV+  ++ LRKKL
Sbjct: 194 TNVVDVFVTYLRKKL 208


>gi|217969842|ref|YP_002355076.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507169|gb|ACK54180.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 230

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 16/185 (8%)

Query: 50  EAFLIGKGEKVL----ELPRI--------IRAH-SQVPLIGISDYPSLQTTLDFFDSGVD 96
           +A L G+G  +L     LPR+        +RA  S  P++ ++    +   +   D+G D
Sbjct: 37  DAALAGQGYDLLILDLGLPRMNGIEVLKRLRARKSAQPVLILTAQDGVDDRVRGLDAGAD 96

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
           D + KP    E+ ARV A+ RR        E G +      R  ++ G++  L  RE  +
Sbjct: 97  DYLTKPFALPELEARVRALTRRGTGQPRCIEIGQLSYDQADRVVKIGGQLVELSAREIGL 156

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           LE  +   G+ V+K Q+   + G + E V  N +E ++ +LRKKL +  G   V + R L
Sbjct: 157 LEIFLLRVGRLVSKDQLVDHLCG-WGEEVSSNAIEVYVHRLRKKLEDS-GVRIV-TVRGL 213

Query: 217 GYSID 221
           GY ++
Sbjct: 214 GYCLE 218


>gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium marinum M]
 gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M]
          Length = 232

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 19/220 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R+L  +GY      DGV      +LE    + +S R D   ++  +       LE+ R +
Sbjct: 20  RSLSFNGYTVELAHDGV-----EALE----MIASDRPDALVLDVMM--PRLDGLEVCRQL 68

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K  ++ A
Sbjct: 69  RSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKPEDDEA 128

Query: 127 ETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  FSD     V  EV        L R E  +LE L+AN  + + +++I   ++G 
Sbjct: 129 ADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILEEVWG- 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD     N +E ++  LR+K   +     + + R +GY +
Sbjct: 188 FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 227


>gi|170698368|ref|ZP_02889442.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170136707|gb|EDT04961.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 261

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 98/191 (51%), Gaps = 17/191 (8%)

Query: 22  DGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGIS 79
           +G  ++ F+S L+ +++L S    D++ ++  L G  G+K+L+  R  R+ S +P+I  +
Sbjct: 31  EGYHIDAFHSGLDAQQFL-SEQWADLAILDWDLPGVSGDKLLQKIRS-RSQSIMPVIFQT 88

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG-- 137
            + +    +   D+G DD + KP   + +LAR+ A+ RR    N +      ++F DG  
Sbjct: 89  VHSAESDIVRILDAGADDYLVKPYDRQVLLARMRALLRRFAPMNVQGR----KMFVDGEC 144

Query: 138 ------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
                 R   V G    L  +E  IL +L  + G  V +  + S ++G +D AV+   V+
Sbjct: 145 ALDQQARSLVVAGVAHKLGTKEFDILWHLARHTGAVVLRQDLMSVVWG-WDAAVQSRSVD 203

Query: 192 SHISKLRKKLR 202
            ++S+LR  L+
Sbjct: 204 MYVSRLRASLK 214


>gi|109453288|gb|ABG34124.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453290|gb|ABG34125.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453292|gb|ABG34126.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453294|gb|ABG34127.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453296|gb|ABG34128.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453298|gb|ABG34129.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453302|gb|ABG34131.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453306|gb|ABG34133.1| PhoP [Salmonella enterica subsp. arizonae]
          Length = 213

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ I+  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIIDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSSDVLLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  E+  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
             E  E + ++  + +LRKK++ +   D + +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITT 212


>gi|75762882|ref|ZP_00742694.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74489629|gb|EAO53033.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 180

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     V
Sbjct: 20  IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSV 79

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N++  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 80  EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIYEAVWK 139

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 140 EVFYKS--DNTVMVHITKIRDKI 160


>gi|332992601|gb|AEF02656.1| two component transcriptional regulator [Alteromonas sp. SN2]
          Length = 237

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L+DD A +          DG ++E  NS        LQS   ++   +   ++  G  
Sbjct: 8   ILLVDDDAELCALLSEFLQTDGFAVETLNSGDAAVARLLQS---DEFDTVVLDIMMPGMS 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L++ R +RA  Q P++ ++        +   + G DD + KP + RE+ AR+ AI RR 
Sbjct: 65  GLDVLRNVRAKKQTPILMLTGRGDDIDRILGLEMGADDYLAKPCNPRELGARIRAIIRRT 124

Query: 120 KVSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  N        AE   I + S  R   V     PL   E   L  LM   G+ + K ++
Sbjct: 125 QNGNAPTQTVVHAELHGIVLDSGARTALVDNTPLPLTGAEFNALSLLMERVGQTITKQEM 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +     EA +   ++ H+S++R+KL      D + S R +GY +
Sbjct: 185 TEEVLNRPLEAYDR-AMDVHVSRIRQKLTAVGINDVIKSVRGVGYQM 230


>gi|304391317|ref|ZP_07373261.1| protein PetR [Ahrensia sp. R2A130]
 gi|303296673|gb|EFL91029.1| protein PetR [Ahrensia sp. R2A130]
          Length = 246

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE+  +  R IR    VP++ ++      + +   ++G DD + KP   RE+L R+ AI 
Sbjct: 80  GERGTDFTRSIREDLDVPVMMLTALGETDSRIAGLEAGADDYLAKPFSPRELLLRINAIL 139

Query: 117 RRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +R++        +   GP       R+ + +GEV  L  RER I+     + G  V + +
Sbjct: 140 KRVQTEELPGIEQVMFGPYTFSIPSRELKCKGEVVKLTDREREIMVLFAQSAGDVVPRME 199

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           +        D    E  V+  I++LR+K+ +  G +P  + + R +GY +
Sbjct: 200 LVGE-----DTGANERTVDVQINRLRRKIESDPG-NPNWLQTVRGIGYKL 243


>gi|326790774|ref|YP_004308595.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541538|gb|ADZ83397.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 225

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  +  P++ +S        +  F+ GVDD V KP   +E++ RV AI +R KV   
Sbjct: 65  REIRKFTDTPVLMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVNAIIKRGKVKEE 124

Query: 125 RAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            A    +     +V  D R   + G+   +  +E  +  Y++ NRG  +++  + S ++G
Sbjct: 125 AASKDVVCFQGLKVDFDARLVSIDGKNVEMTPKEYELFFYMVRNRGIALSRENLISNVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +D   ++  +++HI  LRK L
Sbjct: 185 -YDYYGDDRTLDTHIKLLRKSL 205


>gi|302873819|ref|YP_003842452.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689939|ref|ZP_07632385.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576676|gb|ADL50688.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 218

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P+I ++    L   ++   +G +D + KP    E+LAR+  + RR   ++N  E   +
Sbjct: 72  NIPVIFLTAKNGLADKVNGLKAGAEDYIVKPFETVELLARIEVVLRRYSKNSNCIEFKSL 131

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +++ D R  +   E   L  +E  ++  L+ N+   +++  +   I+G ++   E   ++
Sbjct: 132 QIYEDKRIIKKDEETIELTLKEFELMLLLVKNKNIALSREYLLEKIWG-YEYMGETRTID 190

Query: 192 SHISKLRKKL 201
           +HI K+RKKL
Sbjct: 191 THIQKVRKKL 200


>gi|121535008|ref|ZP_01666826.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306421|gb|EAX47345.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           IR  S VP+I ++        +   + G DD V KP   +E+LAR+ AI+RRL+ ++ R 
Sbjct: 66  IRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPASRRD 125

Query: 126 -----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + G   +  + R   + G    L   E ++LE  +A+ G+  ++ Q+   +   
Sbjct: 126 GGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIEKVQ-- 183

Query: 181 FDEAVE--ENVVESHISKLRKKL 201
            D A E  E  V+SHI  LRKKL
Sbjct: 184 -DYAFEGYERTVDSHIKNLRKKL 205


>gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 245

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 24/173 (13%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R +R  S VP+I ++        +   ++G DD V KP   +E+ AR+ A+ RR   
Sbjct: 79  ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRR--- 135

Query: 122 SNNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +R+  GP     D +D E++         GE   L R E R+L  L +   +  ++ Q
Sbjct: 136 --SRSAGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQ 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSI 220
           +   ++G +D   +  +V+ H+ +LR K+      DP   +     R LGY I
Sbjct: 194 LLERVWG-YDYFGDGRIVDVHVRRLRTKIEE----DPAHPRILVTVRGLGYKI 241


>gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1]
 gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 13/186 (6%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF  LE    EE LQ   +  V  I   L+      +++   +R  +++P+I ++    
Sbjct: 26  EGFQVLEACDGEEGLQLVKKHKVHLIVLDLMMPKVDGIKMCMKVREVAEMPIIMLTAKSQ 85

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS------NNRAETGPIRVFSD 136
               +     G DD V KP +  E++AR+ +  RR LK+S          E G +R+ + 
Sbjct: 86  DMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRRYLKMSGLHSSNKEELEVGDLRINTA 145

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHIS 195
             +  V  E   L  RE  ILE L++N G  ++  QI+  ++   +EA + EN V  HI 
Sbjct: 146 THEVFVNNERVKLTPREFAILELLVSNPGIVMSAEQIYEKVWK--EEAFQSENTVMVHIR 203

Query: 196 KLRKKL 201
           K+R+++
Sbjct: 204 KIRERI 209


>gi|254292390|ref|YP_003058413.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254040921|gb|ACT57716.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 228

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           +++R H  +VP+I ++   S    +   DSG +D V KP     +LARV A  R  + S 
Sbjct: 69  KLMRKHGLRVPVIMLTGQDSDSDMVLGLDSGANDYVAKPFKFTVLLARVRAHLRTFEQSE 128

Query: 124 NRA-ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +   + GP       +   +  G+   L  +E  IL+YL    GK VA+ ++ S ++G +
Sbjct: 129 DATFKVGPYEFRPSMKSLTDEAGKKIRLTEKETNILKYLYRAEGKAVAREELLSEVWG-Y 187

Query: 182 DEAVEENVVESHISKLRKKL 201
           +  V  + +E+HI +LR+K+
Sbjct: 188 NANVTTHTLETHIYRLRQKI 207


>gi|269926186|ref|YP_003322809.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789846|gb|ACZ41987.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 238

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 7/152 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NN 124
           +RA+S VP+I ++        +   + G DD + KP   RE++AR+ A+ RR   +  N 
Sbjct: 81  LRANSSVPIIMLTARGQDADIVHGLELGADDYITKPYSPRELIARLRALARRSNNASGNQ 140

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           R   GP ++     +   +GE+  L + +  +  Y++ ++G+ +    +   ++G +  A
Sbjct: 141 RIIAGPFQLDLQHMEVRYKGELIRLTKLQFELFRYMVMHQGEVLPTEDLMRNVWG-YSVA 199

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            ++++V++HI  LR+++      DP   K  L
Sbjct: 200 ADDSLVKTHIYYLRQRIEE----DPAHPKHIL 227


>gi|254518278|ref|ZP_05130334.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912027|gb|EEH97228.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 229

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 15/185 (8%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           F + + ++ L+    E ++     L+  G    +L + IR+ S +P+I IS        +
Sbjct: 29  FKAYDSDKALEILNLEKINLAIMDLMMPGTDGYDLIKKIRSTSNIPIIIISAKCENHDKV 88

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQG- 144
              D G DD + KP    E++ARV A  RR   L + +N       R     +D  +   
Sbjct: 89  IGLDIGADDYITKPFDPLELIARVNAQLRRCYLLNLEDNNENIIKSRDLILDKDKIIVTK 148

Query: 145 ---EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG---LFDEAVEENVVESHISKLR 198
              EVF L  +E ++LE  M N+ K + K +IF  I+    L+D    +NV+  HIS LR
Sbjct: 149 GGKEVF-LTLKEFKLLELFMENKNKVLTKQRIFENIWKEEYLYD----DNVIMVHISNLR 203

Query: 199 KKLRN 203
            K+ +
Sbjct: 204 DKIED 208


>gi|220935638|ref|YP_002514537.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996948|gb|ACL73550.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 216

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 9/134 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP+I ++        +   ++GVDD V KP   RE++AR+ A+ RR    N   E  P+ 
Sbjct: 82  VPIIMLTARGEEDDRVGGLEAGVDDYVTKPFSPRELVARIKAVMRRTVPEN---EDKPLE 138

Query: 133 VFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           V     DP      V G    +   E R+L++ M +  +  +++Q+   ++G  +  VEE
Sbjct: 139 VDGLTLDPGSHRASVDGNALEMGPTEFRLLQFFMTHPERVYSRSQLLDRVWG-RNTYVEE 197

Query: 188 NVVESHISKLRKKL 201
             V+ HI +LRK L
Sbjct: 198 RTVDVHILRLRKAL 211


>gi|218682120|ref|ZP_03529721.1| putative phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium etli CIAT 894]
          Length = 227

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +    +G DD V KP    E++ARV A+ R
Sbjct: 62  IELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  V +   + G I +  +      +     L   E R+LE+LM++ G+  +++Q+  
Sbjct: 122 RARPEVLSTVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|124514958|gb|EAY56469.1| putative two component transcriptional regulator, winged helix
           family [Leptospirillum rubarum]
 gi|206603908|gb|EDZ40388.1| Putative two component transcriptional regulator, winged helix
           family [Leptospirillum sp. Group II '5-way CG']
          Length = 253

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 13/163 (7%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGV-DDVVNKPIHHREILARVAAIY 116
           LE+ R+IR+     + P++ +S        +     G  DD + KP + RE L R+  + 
Sbjct: 72  LEICRVIRSSPRGQKTPILALSGPEGADLKIQTLTEGAADDFLEKPFNPREFLVRIGVLL 131

Query: 117 RRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR    +    R   GP+   SD  +  + G+   L   E RI+ YL+ ++G  + K  +
Sbjct: 132 RRYYREEFRGLRFVFGPLTFDSDRMELRLSGKEILLTPIEYRIMHYLILHQGFLIRKEDL 191

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            +A++   D  VEE+ ++ HI  +RKKL      DP  + RF+
Sbjct: 192 SAALWSP-DAMVEEDNLKVHICSIRKKLG-----DPAKASRFI 228


>gi|312863560|ref|ZP_07723798.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
 gi|322516479|ref|ZP_08069398.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|311101096|gb|EFQ59301.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
 gi|322124998|gb|EFX96410.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 227

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 14/204 (6%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++    LF ++   ++ ++  E E   QS    D+  ++  L GKG +  E+ 
Sbjct: 7   IEDNEDIQNILFNLFSEEHDIIQAYSGTEGELVFQSQEI-DLVLLDIMLPGKGGE--EVL 63

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           + IR  S VP+I ++          +   G +D + KP    E+ ARV+   R     ++
Sbjct: 64  KFIRQRSSVPVIMLTALGDKHLISQYLLDGANDYIVKPFDLEEVYARVSVQLREHSKGSD 123

Query: 125 RA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           R     +   I + SD  +   QG+V  L ++E +I   L+ N  K   K  ++  ++  
Sbjct: 124 RPDNIYQVKNITINSDSFEVSCQGKVIRLGKKEFQIFHTLLQNPKKIFTKDDLYETVW-- 181

Query: 181 FDEA---VEENVVESHISKLRKKL 201
             EA     +N + + +S LRKKL
Sbjct: 182 --EAPYLSCDNTLNAQLSNLRKKL 203


>gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 243

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 19/175 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           L R+       P+I ++        +    SG DD + KP    E+LARV A+ RR    
Sbjct: 65  LSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTSGG 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +   ++ + G + ++ +  +  + G+   L  +E  +L YL    G  + +  
Sbjct: 125 DEGVLSEQKDGSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTRDD 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSIDWN 223
           + +A++G FD    +  V+ H+S LRKKL      DP    +DS R +GY +  N
Sbjct: 185 LMNAVWG-FDYIGGQRTVDVHVSSLRKKLE----LDPDSVHIDSIRGVGYKLVVN 234


>gi|296187493|ref|ZP_06855888.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|296048015|gb|EFG87454.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 225

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 10/152 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G KV E    IR  S VP+I ++     Q  L  FD G D  V KP   + ++A+  A+ 
Sbjct: 61  GFKVCEC---IRKISNVPIIMLTAKTEEQDILQGFDEGTDAYVTKPFSPKVLVAKANALL 117

Query: 117 RRL--KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            R+  K++ N    ++ G I  F+ G +  V      L  +E  +L++L+ N+G  ++K 
Sbjct: 118 NRVDNKLNANDNIFSKDGLIIDFNSG-EVSVDNSKIVLTHKEYDLLKFLIQNKGIILSKD 176

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            I   ++G +D   +   +++HI +LR+KL N
Sbjct: 177 IILDKVWG-YDYFGDPRTIDTHIRRLRQKLGN 207


>gi|90414906|ref|ZP_01222870.1| transcriptional regulatory protein CpxR [Photobacterium profundum
           3TCK]
 gi|90323962|gb|EAS40558.1| transcriptional regulatory protein CpxR [Photobacterium profundum
           3TCK]
          Length = 231

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 28/216 (12%)

Query: 22  DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVPL 75
           D + +EGF+ +E    ++  A+ D S I+  L+        G ++L   R +R     P+
Sbjct: 19  DILEMEGFDIVEANNGIEGLAKIDTS-IDLILLDVMMPKMNGTQML---RKLRESFATPV 74

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP----- 130
           + ++        +   + G DD + KP   RE+LAR+ AI RR +++ N   T       
Sbjct: 75  LMLTAKGEEIDRVLGLELGADDYLPKPFSDRELLARIRAILRRTQLTENNLRTNEPECLS 134

Query: 131 ---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDE 183
              I ++   ++    GE   +   E  +L YL+ + GK +AK ++   + G     FD 
Sbjct: 135 YQDIDIYPGRQEVFCLGESIEMTGTELALLSYLIQHPGKIIAKNELSMEVLGKRLAQFDR 194

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           A     ++ H+S LRKKL  +    P + + R  GY
Sbjct: 195 A-----IDMHVSNLRKKLPERADGKPRIKTLRGKGY 225


>gi|11321503|gb|AAG34188.1|AF321122_7 Sim1 [Streptomyces antibioticus]
 gi|16224023|gb|AAL15604.1|AF322256_25 Sim1 [Streptomyces antibioticus]
          Length = 251

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IRA S VP+I +S        +     G DD +  P   R+++AR+ A+ RR +
Sbjct: 72  FEVCRAIRAVSHVPIIVVSARDDELDQILSLKLGADDYIVWPCGMRQLVARMEALIRRAR 131

Query: 121 -------VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                  V    AE G     P+R+    R     G   PL R+E  +L  L  + G+  
Sbjct: 132 NAWESWGVPLASAEAGVRQFGPVRIDLQRRSVTRDGHEVPLTRKEFDMLALLATDPGRVF 191

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + QI   ++G  D A +   +  H++ +RKKLR     + V++ R +G+ +
Sbjct: 192 TREQIMFEVWG-HDGAGDTRTLGVHVTGIRKKLRMP---ELVETVRGVGFRL 239


>gi|330957583|gb|EGH57843.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 220

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 24/218 (11%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL  +GY   + +DG+S    ++L  E +        +  ++ F         +L R +R
Sbjct: 19  ALNNEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           A    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR   S  RA 
Sbjct: 68  AEELALPVLILTARDGTADRIAGLDAGADDYLVKPFDVDELKARVRALLRR---SQGRAQ 124

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   I +    +    QG   P+   E ++L  LM   GK V + ++ + +YG + +
Sbjct: 125 PLLEHAGISLDPASQQVTFQGNEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE N +E  I  LRKKL  +L    + + R +GY ++
Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217


>gi|319792963|ref|YP_004154603.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595426|gb|ADU36492.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 221

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R+     ++P + ++   SL   +   ++G DD + KP    E+ AR+ A+ RR + V
Sbjct: 63  LQRLRERDQRLPALILTARDSLNERVASLNAGADDFLAKPFALAELEARLHALVRRARGV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + R   GP+   S  R   + GE   L  RE+ +L  L+   G+ ++K QI   ++   
Sbjct: 123 EHPRLACGPLVYDSARRHFVLNGEALALSPREQAVLRALVQRSGEPLSKQQILERVFS-D 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE V    VE  + +LRK+L +  G   V + R LGY ++
Sbjct: 182 DEEVHPEAVEVFVYRLRKRL-DGTGVRIV-TLRGLGYVLE 219


>gi|314965527|gb|EFT09626.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL082PA2]
 gi|315094280|gb|EFT66256.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL060PA1]
 gi|327329071|gb|EGE70831.1| KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL103PA1]
          Length = 227

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G KV+E    +R  S  P++ IS        ++  D+G DD V KP    E+LAR+  + 
Sbjct: 59  GVKVIE---AVRGWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLT 115

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR  +  +  +  PI  F               G    L   E R+LE L+ N G+ V +
Sbjct: 116 RR--IGQDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTR 173

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             + S ++G  +   +   +  +IS+LRKKL
Sbjct: 174 QTMLSQVWG-SEHVADTGYLRLYISQLRKKL 203


>gi|299066755|emb|CBJ37949.1| putative response regulator, CheY family [Ralstonia solanacearum
           CMR15]
          Length = 230

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPI 131
           +P++ ++ + +++  +   + G DD + KP    E+ AR  A+ RR       + + GP+
Sbjct: 73  LPVMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSHGHERTQLQCGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
                     ++GE   L  RER +LE L+   G+ V K  I   I+G+ +E+V  + +E
Sbjct: 133 HYDGTSGAFTLRGEALALTGRERAVLEVLVLRDGRAVNKAAISEKIFGI-NESVNADAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LRKKL
Sbjct: 192 IYVHRLRKKL 201


>gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
 gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
          Length = 237

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SNN  +      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218


>gi|221218319|ref|YP_002524346.1| two component transcriptional regulator, winged-helix family
           [Rhodobacter sphaeroides KD131]
 gi|221163346|gb|ACM04312.1| two component transcriptional regulator, winged-helix family
           [Rhodobacter sphaeroides KD131]
          Length = 229

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 6/150 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGP 130
             P+I ++    +   +D  ++G DD + KP    E+ AR+ ++ RR   + N     G 
Sbjct: 82  STPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYGGNPNPVVRLGA 141

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
             V    R    +G   PL  RE  +LE  +A   + ++K Q+   ++  F+  +E N +
Sbjct: 142 FEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS-FEAEIESNAI 200

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++S+LR+KL + +    +++ R LGY +
Sbjct: 201 EVYVSRLRRKLDHSV----IETVRGLGYRL 226


>gi|86356168|ref|YP_468060.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CFN 42]
 gi|190890217|ref|YP_001976759.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CIAT 652]
 gi|86280270|gb|ABC89333.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CFN 42]
 gi|190695496|gb|ACE89581.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CIAT 652]
 gi|327192727|gb|EGE59663.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CNPAF512]
          Length = 227

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +    +G DD V KP    E++ARV A+ R
Sbjct: 62  IELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  V ++  + G I +  +      +     L   E R+LE+LM++ G+  +++Q+  
Sbjct: 122 RARPEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1]
 gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1]
          Length = 222

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 15/212 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLELPRIIR 68
           L + GY  +   DG++  G           +SARE+   +    +G  +    E+ R +R
Sbjct: 22  LEQAGYRVITAPDGIT--GL----------TSARENTPDLVILDLGLPDFDGAEVARRLR 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S VP+I ++   ++   ++  ++G DD + KP H  E++ARV  +  R +        
Sbjct: 70  KTSSVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARV-KVQLRHQQHGEVITI 128

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +    R     G    L  +E  +L +L    G+  ++ +I   ++   +     N
Sbjct: 129 GALEIHPQKRLCSYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWN-GELPSNSN 187

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           VV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 188 VVDVHMANMRAKLRDLDGYGVIRTVRGIGYAL 219


>gi|23012247|ref|ZP_00052379.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 228

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 6/149 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131
            P++ ++   ++   +   D G DD + KP    E+ AR+ A+ RR    +    E G I
Sbjct: 81  TPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAAGRATASLEHGGI 140

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           R+        V G   P+ RRE  +L  LM       +K ++   +YG + E +E N VE
Sbjct: 141 RLDLGSLTVTVDGAQIPVSRREFMVLAALMERPSVLRSKAELEDRLYG-WQEEIESNAVE 199

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            H+      LR K+G   +++ R LGY +
Sbjct: 200 VHV----HNLRAKIGKHAIETVRGLGYRM 224


>gi|325845377|ref|ZP_08168676.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Turicibacter sp. HGF1]
 gi|325488592|gb|EGC91002.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Turicibacter sp. HGF1]
          Length = 230

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 6/118 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-----SNNRAETGPIRVFSDGRDPEVQGE 145
            D G DD + KP   RE+++++ AI RR +V     + N    G I++ +   +  V G+
Sbjct: 93  LDFGADDYMTKPFSSREVVSKIKAIIRRKEVLSSEKNKNYLGYGSIKLDNSRFEVLVNGQ 152

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           V     +E  +LE+L+ ++G+ +++  +   ++G F+   +  +V+ HI K+R+KL++
Sbjct: 153 VIDFTLKEYELLEFLIQHKGQAMSRDVLLDRLWG-FEYDGDTRIVDVHIFKIREKLKD 209


>gi|299067888|emb|CBJ39101.1| putative response regulator, CheY family [Ralstonia solanacearum
           CMR15]
          Length = 232

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+    + +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR    
Sbjct: 66  LKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGG 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP+     GR   ++ ++  L  RE  +LE L++  G+ V+K Q+   + G +
Sbjct: 126 GATLVRHGPLAFDQVGRIAYIRDQMVELSARELGLLEILLSRAGRLVSKEQLVDHLCG-W 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E V  N +E ++ +LRKK+  ++    + + R LGY ++
Sbjct: 185 GEEVSNNAIEVYVHRLRKKI--EVDGIRIATVRGLGYCLE 222


>gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|224368969|ref|YP_002603133.1| two component transcriptional regulator (Winged helix family
           protein) [Desulfobacterium autotrophicum HRM2]
 gi|223691686|gb|ACN14969.1| two component transcriptional regulator (Winged helix family
           protein) [Desulfobacterium autotrophicum HRM2]
          Length = 228

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 13/217 (5%)

Query: 13  DGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           D  IA F   G+S  GF   +++  ++ L  +  E+   I   ++      + L + +RA
Sbjct: 9   DVKIADFVIKGLSAAGFAVDHAVNGQDGLHMACFEENDLIVVDVMLPCLDGISLIKTLRA 68

Query: 70  HS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126
                P+I +S    +   +   ++G DD + KP    E+LAR+ A+ RR    V     
Sbjct: 69  RGFNTPVIVLSARDRVDDRVRGLEAGADDYLTKPFAFSELLARIQALIRRAGGVVDPTTL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             G + +    R+    G V  L   E  +LEYLM N+ + V+KT I   ++   FD   
Sbjct: 129 SYGELVMDLMKREVRRDGRVVELQPLEFSLLEYLMRNQERVVSKTMIMEHVWNYNFDPMT 188

Query: 186 EENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
             NVVE+ + +LR K+    GF P  + + R  GY +
Sbjct: 189 --NVVEARVCRLRDKIDK--GFHPKLIHTVRGAGYVL 221


>gi|254477299|ref|ZP_05090685.1| two-component response regulator [Ruegeria sp. R11]
 gi|214031542|gb|EEB72377.1| two-component response regulator [Ruegeria sp. R11]
          Length = 225

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 5/154 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A    P+I ++   +++  ++  ++G DD ++KP    E+LAR+ A+ RR +   +   T
Sbjct: 69  ARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGRGEGDAPAT 128

Query: 129 G----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 + +    +     G   PL  +E R+LE LM ++G+   +  +   ++ +  E 
Sbjct: 129 KLSHRGLELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLERVWDINFEP 188

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +VVE+H+S+LR K+      + + + R  GY
Sbjct: 189 -STSVVETHMSRLRNKIEKPFDAEYIRTIRGSGY 221


>gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842]
 gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842]
          Length = 228

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     V
Sbjct: 68  IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSV 127

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N++  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 128 EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIYEAVWK 187

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N +  HI+K+R K+
Sbjct: 188 EVFYKS--DNTIMVHITKIRDKI 208


>gi|330812221|ref|YP_004356683.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380329|gb|AEA71679.1| putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 226

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 25/230 (10%)

Query: 2   FVLIDDRALVKDGYI-ALFGDDGVSLEGFNSLEFEEWL---------QSSAREDVSAIEA 51
            ++++D A + D  + AL G      EGF++     WL         Q SA  D+  ++ 
Sbjct: 4   ILIVEDEAAIADTLVFALQG------EGFDT----TWLSLGAAALEHQKSAPADLIILDV 53

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            L        E  + +R  S VP+I ++        +   + G DD V KP   RE+ AR
Sbjct: 54  GL--PDISGFETCKNLRRFSDVPVIFLTARDGEIDRVVGLEIGADDYVVKPFSPREVAAR 111

Query: 112 VAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V AI +R+       + T   +V +D      +G+   L R E R+L  L+    +  ++
Sbjct: 112 VRAILKRVAPRPAAESSTALFQVDADRVQINYRGKPLNLTRHEFRLLNCLLEQPERVFSR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            Q+  A+ G+  +A  E  ++SHI  +R KLR  +   +P+ + R LGYS
Sbjct: 172 EQLLDAL-GVASDAGYERSIDSHIKSVRAKLRLVRAEAEPIQTHRGLGYS 220


>gi|302870967|ref|YP_003839603.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573826|gb|ADL41617.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 224

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           + L ++IR    Q P++ ++   S++  +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  INLLKLIRLKGIQTPVLCLTAKDSIEDRVIGLDAGADDYLVKPFSFDELLARIRALLRRY 119

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  +KV +   +T   +V          G++  L  +E  ILEYL  N+G+ + ++
Sbjct: 120 AQTREPIIKVKDLVIDTNSHKVTR-------AGKLIELTSKEYSILEYLARNKGRVLTRS 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI   ++  +D     N+V+ +I  LR+K+ +      + + R +GY +
Sbjct: 173 QIAEHVWN-YDFEGTSNIVDVYIRYLRRKIDDGFPEKLIYTIRGVGYML 220


>gi|289167181|ref|YP_003445448.1| response regulator [Streptococcus mitis B6]
 gi|288906746|emb|CBJ21580.1| response regulator [Streptococcus mitis B6]
          Length = 228

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 4/145 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           LE+ ++IR    VP+  I+     +  +   ++G DD + KP   +E+LARV    R   
Sbjct: 60  LEICQMIREQITVPICFITAKDMDEDLVAGINAGADDYIMKPFSMQELLARVKMHLRREE 119

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R+K + ++ + G + +++D ++  V  +   L RRE  I+  L +N  K  +  +I++ +
Sbjct: 120 RIKGNVHQIKIGKLILYTDSKELFVNDDKIALTRREFDIVNLLASNPSKIYSIEEIYNYL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           Y    EA+  +V E +I ++R+KL+
Sbjct: 180 YPQSSEALLRSVSE-YIYQIRQKLK 203


>gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
 gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
          Length = 240

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 11/153 (7%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + +RA  S+ P++ +S        +   + G DD V KP   RE+LARV AI RR 
Sbjct: 62  IEVCKRLRAKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRT 121

Query: 120 --KVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             ++S +  E          +R++ +  +     E+ PL  +E  +L YLM +    + +
Sbjct: 122 EAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++   I+G +D   E  +V+ HI KLR+K+ +
Sbjct: 182 ERLLERIWG-YDFGQETRLVDVHIGKLREKIED 213


>gi|167034724|ref|YP_001669955.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861212|gb|ABY99619.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 231

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 14/164 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G++VL   R +R  S VP++ +S   S    +D  D G +D V KP   +E LARV A+ 
Sbjct: 63  GQQVL---RELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119

Query: 117 RRLKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R++  +      A  GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+
Sbjct: 120 RQVPQAGGSEVAASFGPLTVDFAFRRVTIDGVEVALTRKEYALLALLAGHPGRVITQQQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
              I+G        +V ++H  ++    LR KLG DP  + RF+
Sbjct: 180 LKDIWG------PTHVEDTHYLRIVVGHLRQKLGDDPT-APRFI 216


>gi|283784940|ref|YP_003364805.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282948394|emb|CBG87982.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 223

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 102/218 (46%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R  R +   +P++ ++     Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRGNDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVVARMQALMRRNSG 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++     P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 HASQIISIPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDALMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E + ++  + +LRKK++ +   D + + R  GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPDDVITTVRGQGY 218


>gi|239904794|ref|YP_002951532.1| transcriptional regulatory protein CpxR [Desulfovibrio magneticus
           RS-1]
 gi|239794657|dbj|BAH73646.1| transcriptional regulatory protein CpxR [Desulfovibrio magneticus
           RS-1]
          Length = 231

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 9/165 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA SQ+P++ ++        +   + G DD + KP + RE++AR+ AI RR + 
Sbjct: 62  EVLRRIRAASQIPVLMLTARGEDVDRIVGLEIGADDYLPKPFNSRELVARIRAILRRTET 121

Query: 122 SN-NRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++ G     SD      GR     G+   L   E  ILE LM   GK V++ ++ 
Sbjct: 122 GEPTPSKAGESISISDVVINVGGRSVLCNGKPLDLTSIEYSILEVLMRMAGKVVSREELA 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
               G    A E + ++ HI  LRKKL  + L  + + + R +GY
Sbjct: 182 EKAMGRKHSAYERS-LDVHICSLRKKLGTHSLYGERIKTVRNMGY 225


>gi|228952982|ref|ZP_04115044.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228806703|gb|EEM53260.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 224

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 5/162 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR +
Sbjct: 61  LEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREE 120

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              N+  +      +++  + R      E   L  +E  +L   M N  + + +  +   
Sbjct: 121 HIENKQVSFLTFKDLQLQIESRTITKGDEEIELTNKEFELLLMFMKNINRVLTRDVLLDQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G +D  VE N+V+ ++  LR KL +    + + + R  GY
Sbjct: 181 VWG-YDAIVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221


>gi|225872896|ref|YP_002754353.1| TcrA [Acidobacterium capsulatum ATCC 51196]
 gi|225793949|gb|ACO34039.1| TcrA [Acidobacterium capsulatum ATCC 51196]
          Length = 224

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 14/200 (7%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65
           +R L +DG+      DG   +G   +   E+       D + ++  L G  G +VLE  R
Sbjct: 17  ERGLREDGHRVSVTHDGA--DGARRMLSGEF-------DAALLDILLPGMSGLEVLE--R 65

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNN 124
           +   H + P++ ++   ++   L+ FD G DD + KP     +LARV AI RR++  +  
Sbjct: 66  VRAQHCKTPILMLTAVDAVPKVLEAFDLGADDYLVKPFLLEILLARVGAIARRVQPQAPQ 125

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               G + +    R     G    L R++  +LE LM   G   ++ ++  A +G    A
Sbjct: 126 MLHAGGLTLDRQRRVVARDGRQIALTRKQVDLLEVLMRRSGLVTSREELIEAGWG-SASA 184

Query: 185 VEENVVESHISKLRKKLRNK 204
           V+EN ++ +I  LR KL ++
Sbjct: 185 VKENTLDVYIHSLRTKLGDR 204


>gi|261340008|ref|ZP_05967866.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC
           35316]
 gi|288317926|gb|EFC56864.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC
           35316]
          Length = 234

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 15/165 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I +S        L     G DD V KP +  E++ARV A+ RR K +  +A
Sbjct: 70  LRQESSVPVIMVSALDQDVDKLMGLRLGADDYVIKPFNPSEVVARVEAVLRRTKPTIQQA 129

Query: 127 ETGPIR-----VFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              P+R     V+ D         PEV   V  L   E ++L YL+    K  ++ ++ +
Sbjct: 130 GAAPLRTSFLTVYPDDFYVEVTVGPEVVSPV--LTTTEFKLLTYLVRYPRKVCSREELLN 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A     D    +  V+SH+SKLRKKL     +   +S R +GY +
Sbjct: 188 ACLPEGDTL--DRTVDSHMSKLRKKLELAGLYGVPESIRGMGYRL 230


>gi|160873182|ref|YP_001552498.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|160858704|gb|ABX47238.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315265409|gb|ADT92262.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 229

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 86/168 (51%), Gaps = 14/168 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           + L + +R H +VP++ ++     +  +   ++G +D ++KP   RE++AR+  + R L 
Sbjct: 62  ISLLQTLRQHDKVPVLILTARDQEEEKIRLLEAGANDYLSKPFGIRELIARIKVLVRDLV 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++  + G +++        ++ +   L ++E  ++E LMA+ G+ V +T++   I
Sbjct: 122 DEPALSDVLQFGALKLQKSTHQLWLEQQEIALTKKEFALIETLMAHPGQLVKQTELLRDI 181

Query: 178 YGLFDEAVEENVVESH-----ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G      E +  +SH     +S+LRKKL +      + ++  LGY +
Sbjct: 182 WG------ETHTEDSHYLRILVSQLRKKLNDSTEQQLIKTEAGLGYRL 223


>gi|83309288|ref|YP_419552.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82944129|dbj|BAE48993.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 223

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 6/132 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F++G DD V KP    E++ RV A+ RR    ++     GP+R+ + G      G    L
Sbjct: 91  FNAGADDYVTKPFEMEEVVTRVRALIRRAAGHASPEITCGPLRIDTVGGRVSRAGLPIAL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E RIL YL  ++G+ V+++++   +Y   D   + NV++  ++++R+    KLG D 
Sbjct: 151 TAQEFRILSYLAHHQGRVVSRSELVEHVYD-RDADPDSNVLDVLVARIRR----KLGVDV 205

Query: 210 VDSKRFLGYSID 221
           + + R  G+ ++
Sbjct: 206 IHTLRGQGWRME 217


>gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 236

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR +
Sbjct: 62  MEVCREVRKQYDLPIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANLRRQQ 121

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           V+ + A T       G + +  +    + +GE   L  RE  ++ YL  + G+ + +  +
Sbjct: 122 VAADDAPTTQKEITIGELSILPEAYQVKKRGEPVDLTHREFELIHYLGKHLGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
             A++G +D   +   V+  + +LR+K+ +   + + + ++R +GY
Sbjct: 182 LQAVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPNWIMTRRGVGY 226


>gi|88797445|ref|ZP_01113034.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
 gi|88779617|gb|EAR10803.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
          Length = 234

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 77/151 (50%), Gaps = 2/151 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ +S   SL   +  F++G DD + KP+   E+  RV A+  R  + +++   GP++
Sbjct: 74  TPVLLLSKRGSLNDKITGFNAGADDFLVKPVDIEEVFLRVRALAARRSIISHQLSAGPLK 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           + +  R   +      L     R+LE L+ +    V++ Q+  A++G  D+  + N +  
Sbjct: 134 LDAQRRTCVLNRAPVSLTPITFRLLETLLRDSPNPVSQQQLTRAVWG--DDLPDSNKLRV 191

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           H+ +LR+ L+ + G   + +    G+++D N
Sbjct: 192 HMHRLRQSLKPQGGESLIKTVPGFGFAVDAN 222


>gi|83854912|ref|ZP_00948442.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83842755|gb|EAP81922.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 223

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 5/156 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
           A +  P++ ++   S+   +   ++G DD + KP    E+ ARV A+ RR +        
Sbjct: 69  AGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQAMEQETVL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             G + +    R     G+   L  RE  +LE+L+  +G+   +T +  A++ + FD   
Sbjct: 129 RAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVWDISFDPMT 188

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 189 --NVVETHISRLRAKVDKPFDRELIQTVRGAGYRID 222


>gi|332561563|ref|ZP_08415876.1| two component transcriptional regulator, winged-helix family
           protein [Rhodobacter sphaeroides WS8N]
 gi|332274065|gb|EGJ19383.1| two component transcriptional regulator, winged-helix family
           protein [Rhodobacter sphaeroides WS8N]
          Length = 229

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 6/150 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGP 130
             P+I ++    +   +D  ++G DD + KP    E+ AR+ ++ RR   + N     G 
Sbjct: 82  STPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYGGNPNPVVRLGA 141

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
             V    R    +G   PL  RE  +LE  +A   + ++K Q+   ++  F+  +E N +
Sbjct: 142 FEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS-FEAEIESNAI 200

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++S+LR+KL + +    +++ R LGY +
Sbjct: 201 EVYVSRLRRKLDHSV----IETVRGLGYRL 226


>gi|323142466|ref|ZP_08077286.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413043|gb|EFY03942.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp.
           YIT 12067]
          Length = 232

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 5/145 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R +R  S VP+I I+        +   D G DD V KP    E++ARV A+ RRL 
Sbjct: 63  FEVCRRLRKESMVPIIMITARGEDYDKIMGLDIGADDYVIKPFSAPEVMARVRAVLRRLG 122

Query: 121 VSN-NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 A+T     + +  +    ++ GE   L ++E  +L  L  N  K  ++  +  +
Sbjct: 123 AQEPANAQTLSYANLYINLEKYAVQINGEDVALTKKEIELLWTLAKNSTKVFSRDNLLDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           I+G +D   +   V+SHI +LR KL
Sbjct: 183 IWG-YDYFGDSRTVDSHIKRLRAKL 206


>gi|308234020|ref|ZP_07664757.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Atopobium vaginae DSM 15829]
          Length = 246

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 13/168 (7%)

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R+++Q   +P+I I+   +    +   D+G DD + KP    E+L+R+ A+ RR 
Sbjct: 74  ITRTLRSNAQWSHIPIIMITAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRRA 133

Query: 120 KVSNNRA--ETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +        +    RV +   DP      V      L  +E  +L YLM + G    +  
Sbjct: 134 QTPAQMPADKYSVCRVGAIMLDPARHYVCVHDTPVNLTHKEYDLLHYLMLHEGLVFTREV 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  A++G FD   E   V+ HI  LR+KL +   +  V + R +GY +
Sbjct: 194 LMQAVWG-FDFEGESRTVDMHIKTLRQKLGDASCY--VHTVRGVGYCV 238


>gi|295707307|ref|YP_003600382.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294804966|gb|ADF42032.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 227

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 103/207 (49%), Gaps = 14/207 (6%)

Query: 23  GVSLEGFNSLEFEEWLQ--SSARE---DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
           G++ EGF+    ++ ++  + A+E    ++ ++  L   G    E+ R+++    + +I 
Sbjct: 25  GLTNEGFDIKATQDGIEGINVAKEFKPHIAIVDVML--PGMDGFEVCRLLKKMGNIAVIM 82

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAETGPIRVFSD 136
           ++    +   +     G DD + KP    E+LAR+ A I  +     +    GP ++  D
Sbjct: 83  LTAKDQVDDRVKGLTIGADDYMVKPFSFEELLARIQARIRNQFPNLLDEVSIGPFKI--D 140

Query: 137 GRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            R  E++    +  L   E  +L++L+ N G  ++K+ I   ++G +D   EEN+VE +I
Sbjct: 141 DRRKEIKYLNHILDLSPTEYALLKFLVINHGLVLSKSTILDRVWG-YDFGGEENIVEVYI 199

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221
             LR+KL++      + + R +GY ID
Sbjct: 200 RSLREKLQD-YSRTVIRTLRGVGYRID 225


>gi|291523187|emb|CBK81480.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 225

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 13/192 (6%)

Query: 38  LQSSAREDV------SAIEAFLIGKGE---KVLELPRIIR-AHSQVPLIGISDYPSLQTT 87
           LQ+S  EDV      S I+  ++G       V EL   +R  +S +PL+ +++       
Sbjct: 29  LQASGGEDVLKVLETSYIDFIILGDNLVDLNVYELMGQLRDTYSDMPLMLLAEKKERDGL 88

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEV 146
              + +G D+ + K +   E++ R+ A+ RR  K  + R + G + +  D      +G+ 
Sbjct: 89  RKSYMAGADEYLTKNVDEEELVLRIRAVLRRSGKNYDKRLQVGDVILDCDSLSVTRKGDR 148

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             LPR+E  +L  L++   K   +TQ+   I+GL  E   ++ +  H+++LR K R    
Sbjct: 149 QTLPRKEFWLLYKLLSYPDKIFTRTQLMDEIWGLTTET-SQSTLNVHVNRLRNKFRKYPE 207

Query: 207 FDPVDSKRFLGY 218
           FD + + R +GY
Sbjct: 208 FD-LKAVRGIGY 218


>gi|255505806|ref|ZP_05348241.3| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
           14469]
 gi|255265751|gb|EET58956.1| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
           14469]
          Length = 236

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 11/208 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D   A     G  +  F + + +E L+   +  +  +   L+  G    E
Sbjct: 10  LIVDDETMICDSVSAYITKQGYHV--FTAGDGKEALEIFRKYPIMFVILDLMLPGMTGEE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + IR  S+VP+I ++     +  L+  D G DD V KP   +++ AR+ AI RR    
Sbjct: 68  ICQAIRRQSRVPVIMLTAKTQEEDVLNGLDIGADDYVTKPFSVKQLYARMEAILRRTGND 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           LK    +       +  D    EV  QGE   L   E +IL  ++ +  K  ++  +   
Sbjct: 128 LKPLAEKFSWNDNDLQIDFGHSEVRKQGEALSLTPSEWKILSAMIKHPKKVFSRENLIEL 187

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRN 203
           ++G  FD    + V+++HI  LRKKL  
Sbjct: 188 VFGPDFDSY--DRVIDTHIKNLRKKLET 213


>gi|206976990|ref|ZP_03237891.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962303|ref|YP_002340873.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222098284|ref|YP_002532341.1| two-component response regulator [Bacillus cereus Q1]
 gi|229141548|ref|ZP_04270082.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206744795|gb|EDZ56201.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065924|gb|ACJ80174.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221242342|gb|ACM15052.1| Two-component response regulator [Bacillus cereus Q1]
 gi|228641948|gb|EEK98245.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 229

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    K++
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKIT 123

Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL YLM N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|56479001|ref|YP_160590.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1]
 gi|56315044|emb|CAI09689.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1]
          Length = 219

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 27/224 (12%)

Query: 16  IALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFL---IGKGEKVLELPR-----I 66
           + L  DD    EG   SL+ E +     R+  SA+ A      G     L LPR     +
Sbjct: 3   VLLVEDDASLGEGILTSLKPEGYTVDWVRDGSSALHALTHESFGLAVLDLGLPRLDGLEV 62

Query: 67  IR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +R    A +  P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   S
Sbjct: 63  LRQLRAAENPTPVLVLTARDTIADRIAGLDAGADDYLVKPFDVAELKARLRALLRR---S 119

Query: 123 NNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            NR +   +       DP  Q     G+   L R+E  +L  L+A  G+ + + ++   +
Sbjct: 120 FNRPQPA-LEYRGITLDPASQLVTWNGQTVSLQRKEFILLHELIAQPGRVLTRDKLQQVL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           YG  +EA E N +E HI  LRKK   +L    + + R +GY +D
Sbjct: 179 YGWGEEA-ESNALEVHIHHLRKKFFPEL----IRTVRGVGYLVD 217


>gi|332186432|ref|ZP_08388176.1| response regulator [Sphingomonas sp. S17]
 gi|332013415|gb|EGI55476.1| response regulator [Sphingomonas sp. S17]
          Length = 236

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 5/187 (2%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLEL-PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           L+ + RE   AI    +  G   L L  R+   H  +P++ +S    +   +    +G D
Sbjct: 50  LELATREAFDAITLDRMLPGLDGLSLVARLRERHITIPVLMLSALSDVDERIAGLRAGGD 109

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           D + KP    E+  RV  + RR + +       G I      R  +V GE   L   E R
Sbjct: 110 DYLTKPFDFAEMAMRVEVLLRRREQAEAVVLRGGGIECDLVRRTVKVDGEPVRLLHMEFR 169

Query: 156 ILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
           +LE+LM N+G+ + +  IF  ++G  FD     N++  HI++LRKK+       P+ + +
Sbjct: 170 LLEFLMRNQGEVMTRRIIFERVWGYYFDPGA--NLISVHIARLRKKIDRPDRSSPIQTVK 227

Query: 215 FLGYSID 221
             GY  D
Sbjct: 228 GEGYLFD 234


>gi|307244273|ref|ZP_07526388.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492423|gb|EFM64461.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 223

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 66/137 (48%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I ++   + +  L  F+ G D+ + KP     + AR+  I+RR    +   
Sbjct: 65  LREFSNIPVIMLTVKNTDENILRGFEFGADEYITKPFSLPILKARIDNIFRRKNTKSRDI 124

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +        + G+   L ++E  +LE L+ NRG  V + +I  +++G     V 
Sbjct: 125 VFGDLNLNLKSMTAYLSGDNLDLSKQEFSVLEILLENRGANVIRKRIIDSVWGYDLYEVN 184

Query: 187 ENVVESHISKLRKKLRN 203
           +N +   I +LR KL N
Sbjct: 185 DNTLTVTIKRLRYKLGN 201


>gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 12/159 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           I+    +P+I +S   +    L  F+ GVDD V KP   RE++AR+ A+  R K  VS N
Sbjct: 67  IKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVINRSKTDVSEN 126

Query: 125 RA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + + + G    V G    L  +E  +L + + NRG  + + QI + ++G +
Sbjct: 127 DSGIVNIGGMEIDTFGLTVTVDGTRNELTAKEYALLMFFVNNRGIVLTRDQILNEVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGY 218
           D    +  V+  I    K LR+KLG   D + + R +GY
Sbjct: 186 DSFGVDRTVDWQI----KLLRSKLGSCRDCIKTVRGVGY 220


>gi|300311273|ref|YP_003775365.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074058|gb|ADJ63457.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 234

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 28/207 (13%)

Query: 27  EGFNSLE-FEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLI---GISDY 81
           +G  +LE +  W     R D+  ++  L G  G +VL     IR H+   +I    ++D 
Sbjct: 35  DGHQALELYRRW-----RPDLVLLDVMLPGLSGNEVLA---AIRQHASTAVIMVTAVADQ 86

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140
           P L  +L +   G DD V KP H  E++ARV A+ RR L+  +  A+   +R  +   DP
Sbjct: 87  PRLINSLLY---GADDYVVKPYHPGEVVARVHAVLRRMLRPVSGAAQQAVLRHGALTLDP 143

Query: 141 EV---------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +            +   L R E  +L  +MA   +  ++ ++ +  +   +    E VV+
Sbjct: 144 DAALATVDKDGHPQALTLTRTELNLLALMMAAPTRMFSRAELLA--HSQPESDAMERVVD 201

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +H+  LR+KL      + V + R LGY
Sbjct: 202 AHLHNLRRKLEQAGIREVVVTVRGLGY 228


>gi|169647646|gb|ACA61821.1| LRA-16 [uncultured bacterium BLR16]
          Length = 231

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 7/183 (3%)

Query: 28  GFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           GF +  F   +       + A +  L+     G+  LE+ + IRA S VP+  ++     
Sbjct: 29  GFKTTHFPSGIGVVESVKIEAPDLILLDIKLPGKNGLEVCKEIRAFSTVPIFMVTAEIEE 88

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEV 142
              L   + G DD + KP   RE++AR+ A++RR++         TG  ++    +    
Sbjct: 89  IDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQIGVPEPTRTG-FQIDEAQQRISF 147

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           + +   L   E R+L+ L++N G+  +++Q+    Y   ++ + + V++SHI  LRKK+ 
Sbjct: 148 KNQRLDLTPTEYRLLKLLVSNPGRVYSRSQLLDLCYQQ-EQLIIDRVIDSHIKNLRKKIS 206

Query: 203 NKL 205
             L
Sbjct: 207 TAL 209


>gi|297201899|ref|ZP_06919296.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712728|gb|EDY56762.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 233

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 14/134 (10%)

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR---------VFSDGRDPEVQGEV 146
           DD + KP +  E++AR+ A+ RR + ++   +  P+R          +S  RD    G  
Sbjct: 104 DDYITKPFNIDEVVARITAVLRRTRPADVLPQRPPLRYGDLELDETTYSVHRD----GRT 159

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L   E  +L +L+ N G+ V K Q+   ++       E  VVE++IS LR+KL + LG
Sbjct: 160 VQLTPTEYALLRFLVRNGGRIVPKEQLLRHVWQYEHTPPESTVVETYISYLRRKL-DALG 218

Query: 207 FDPVDSKRFLGYSI 220
              + ++R +GY +
Sbjct: 219 PPVITTRRGVGYGL 232


>gi|254251535|ref|ZP_04944853.1| DNA-binding response regulator [Burkholderia dolosa AUO158]
 gi|124894144|gb|EAY68024.1| DNA-binding response regulator [Burkholderia dolosa AUO158]
          Length = 251

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 91  IDVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 149

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 150 --QAGRSESLIRHGTLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 207

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 208 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 247


>gi|76811709|ref|YP_333587.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|134277394|ref|ZP_01764109.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167719473|ref|ZP_02402709.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167902588|ref|ZP_02489793.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|237812357|ref|YP_002896808.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|254179723|ref|ZP_04886322.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254188880|ref|ZP_04895391.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254261213|ref|ZP_04952267.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254297574|ref|ZP_04965027.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|76581162|gb|ABA50637.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|134251044|gb|EBA51123.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|157806912|gb|EDO84082.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157936559|gb|EDO92229.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|184210263|gb|EDU07306.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|237503028|gb|ACQ95346.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|254219902|gb|EET09286.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 237

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           + +S +P++ +++       +   ++G DD V KP   +E +ARV A+YRR   +   +E
Sbjct: 68  KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 127

Query: 128 ---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               GP R+ +  +      E   L  +E  I+E L  N G+ V++ ++   ++G   + 
Sbjct: 128 LIEIGPYRIQTSEKVVYFHHEAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 187

Query: 185 VEENVVESHISKLRKKL 201
                +++HI ++R+KL
Sbjct: 188 AAFRTLDTHIYRIRRKL 204


>gi|332970747|gb|EGK09727.1| response regulator VanR [Desmospora sp. 8437]
          Length = 249

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 8/144 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR    VP+I ++        +    +G DD + KP    E+ AR+ A  RR    N 
Sbjct: 79  RHIRESRNVPVIILTAREEETDLIAGLSTGADDYMTKPFSIPELKARLQAHMRRYLYLNA 138

Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +        G + +  +  +  ++ EV  L  +E +ILE +M+   K  +K+Q+F ++
Sbjct: 139 KPDQPEAILVHGELCLNRNSHELSIKSEVHKLTSKEFKILELMMSYPTKIFSKSQLFRSV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G  D   +EN V  HI +LR+K+
Sbjct: 199 WG-DDSMSDENTVMVHIRRLRRKI 221


>gi|322805225|emb|CBZ02789.1| two-component system response regulator QseB [Clostridium botulinum
           H04402 065]
          Length = 223

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L ++IR +++ VP++ I+   +     + F  G DD + KPI   E++ RV A+ RR ++
Sbjct: 63  LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQI 122

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N  R   G      D    +   +   LP++E  ++  L++   K   + Q+   I+G+
Sbjct: 123 INERRIVIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGI 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E  +   V+ HI++LR + ++   F+ + + R LGY +
Sbjct: 183 ESET-DPRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220


>gi|307329401|ref|ZP_07608563.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306884935|gb|EFN15959.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 16/216 (7%)

Query: 16  IALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS- 71
           IAL  D G+  EGF    +   E+ L      D + I   L+  G    ++ R +RA   
Sbjct: 12  IALAVDRGLRAEGFGVDIAENGEKALGLIRHNDYAVIVLDLMLPGRNGYDVCRTLRAAGI 71

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
             P++ ++         D  D G DD + KP     +LAR+ A+ RR     +  +  P+
Sbjct: 72  ATPVLILTAKDGEYDEADALDLGADDYLTKPFSFVVLLARIRALLRR-----SAPQRSPV 126

Query: 132 RVFSD-GRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
               D   DP         E   L  RE  +LE+L+ +    V+KT + + ++  + E  
Sbjct: 127 LRAGDLWLDPAAHRCGRGDERLDLTPREFGLLEFLLRHPDTVVSKTDLLAQVWDAWFEG- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + N+VE ++  LR+K+    G   +D+ R +GY +D
Sbjct: 186 DPNIVEVYVGYLRRKIDIPFGRSAIDTVRGVGYRLD 221


>gi|303233229|ref|ZP_07319901.1| putative response regulator ArlR [Atopobium vaginae PB189-T1-4]
 gi|302480619|gb|EFL43707.1| putative response regulator ArlR [Atopobium vaginae PB189-T1-4]
          Length = 223

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 89/179 (49%), Gaps = 5/179 (2%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D + ++  L GK    ++L R +R ++  +P++ ++   S    ++  D+G DD + KP 
Sbjct: 46  DAAIVDRMLPGKDG--VDLIRELRHNNNSMPILMLTARTSTTDKVEGLDAGADDYMTKPF 103

Query: 104 HHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
              E+LAR+ A+ RR   V  ++       +     D   +     L  +E  +L+ L+ 
Sbjct: 104 EADELLARLRALTRRQGDVMLDQVSFADFTLDLTTHDLTCKNHTVHLSGKEFEVLKMLLN 163

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  + V+K  + + ++G+   A  EN VE+++S LRKKL        + + R LGY ++
Sbjct: 164 SPSRVVSKQDLLTYVWGV-TSATNENSVEAYVSFLRKKLMYVHSRVQITTLRMLGYRLE 221


>gi|228477728|ref|ZP_04062357.1| response regulator [Streptococcus salivarius SK126]
 gi|228250617|gb|EEK09828.1| response regulator [Streptococcus salivarius SK126]
          Length = 226

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP     +LA++  + RR        
Sbjct: 67  IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + +     D   QGEV PL + E +IL+ L  + G  V++  +   ++   D 
Sbjct: 127 SLLEYMGVILNLKAMDLVYQGEVVPLTKNEFQILQVLFDHAGNIVSREDLMKELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      D +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGL 222


>gi|227821360|ref|YP_002825330.1| putative two-component response regulator transcriptional
           regulatory protein [Sinorhizobium fredii NGR234]
 gi|227340359|gb|ACP24577.1| putative two-component response regulator transcriptional
           regulatory protein [Sinorhizobium fredii NGR234]
          Length = 233

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 9/154 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETG 129
             P++ +S    +   +    +G DD + KP    E+LARV  + RR    +       G
Sbjct: 76  HTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPDQDMVYRVG 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +         QG+  PL  RE R+LEYLM N G+ V +T +   ++   FD   + N
Sbjct: 136 DLELDRLAHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP--QTN 193

Query: 189 VVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           V++ H+S+LR K+     F+P  + + R  GY I
Sbjct: 194 VIDVHVSRLRSKIEKD--FEPPLLRTVRGAGYMI 225


>gi|115352716|ref|YP_774555.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282704|gb|ABI88221.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 220

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IDVLRTLRARGLSLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                R+E+    G + +        + G    L  RE  +L+ L+A  G  ++K+Q+  
Sbjct: 119 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLQALLARPGAVLSKSQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216


>gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 233

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 11/173 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ R IR  S VP+I +S   +    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRTE 120

Query: 119 LKVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           L V +    T       G +++  D    + +G+   L  RE  +L +L  + G+ + + 
Sbjct: 121 LTVESQTESTSDSDIVIGDLKIIPDTFLAQKKGKELELTHREFELLYHLATHVGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +  G  + + ++R +GY +  N
Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDIPGRPEYILTRRGVGYYMRNN 232


>gi|312864239|ref|ZP_07724473.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
 gi|311100240|gb|EFQ58449.1| response regulator receiver domain protein [Streptococcus
           vestibularis F0396]
          Length = 225

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 14/119 (11%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---DPE----VQ 143
            D+G DD + KPI  +E+LAR+ ++ RR+      +ET   ++ + G    D E    V 
Sbjct: 93  LDAGADDYLTKPISLKELLARLRSLERRV------SETFTAKILTLGSVRLDQEEQELVA 146

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           G    L  RE +++ + M N  K++    +F  I+   +E V+E++V  +IS LR+KL+
Sbjct: 147 GNAIRLSSRETKLMAHFMLNPAKKLTTDHLFKTIWD-DEEDVDESIVWVYISYLRQKLQ 204


>gi|229593016|ref|YP_002875135.1| DNA-binding response regulator CreB [Pseudomonas fluorescens SBW25]
 gi|229364882|emb|CAY52950.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 222

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 15/223 (6%)

Query: 2   FVLIDDRALVKDGYI-ALFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++++D A + D  I AL G      EGF +  L   +   +  R+  + +    IG  +
Sbjct: 4   ILIVEDEAAIADTLIFALQG------EGFTTTWLSLGQEALAYQRQTPADLVILDIGLPD 57

Query: 59  KV-LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E  + +R  S+VP++ +S        +   + G DD V KP   RE+ ARV AI +
Sbjct: 58  ITGFETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVTARVRAILK 117

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R+  S   A     +V  +      + +   L R E R+L+ L+    +  ++ Q+  A+
Sbjct: 118 RIGPS---AAPAVFQVDLERMQISYRSQPLSLTRHEFRLLQSLLEQPERVFSREQLLDAV 174

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
               D   E N ++SHI  LR KLR+     +P+ + R LGYS
Sbjct: 175 GVAADAGYERN-IDSHIKSLRSKLRSVAADAEPIQTHRGLGYS 216


>gi|294501956|ref|YP_003565656.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294351893|gb|ADE72222.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 227

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 103/207 (49%), Gaps = 14/207 (6%)

Query: 23  GVSLEGFNSLEFEEWLQ--SSARE---DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
           G++ EGF+    ++ ++  + A+E    ++ ++  L   G    E+ R+++    + +I 
Sbjct: 25  GLTNEGFDIKATQDGIEGINVAKEFKPHIAIVDVML--PGMDGFEVCRLLKKMGDIAVIM 82

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAETGPIRVFSD 136
           ++    +   +     G DD + KP    E+LAR+ A I  +     +    GP ++  D
Sbjct: 83  LTAKDQVDDRVKGLTIGADDYMVKPFSFEELLARIQARIRNQFPNLLDEVSIGPFKI--D 140

Query: 137 GRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            R  E++    +  L   E  +L++L+ N G  ++K+ I   ++G +D   EEN+VE +I
Sbjct: 141 DRRKEIKYLNHILDLSPTEYALLKFLVINHGLVLSKSTILDRVWG-YDFGGEENIVEVYI 199

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221
             LR+KL++      + + R +GY ID
Sbjct: 200 RSLREKLQDH-SRTVIRTLRGVGYRID 225


>gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 223

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 87/162 (53%), Gaps = 14/162 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R I+ +++ P+I ++     +  +  F+ G DD + KP +++ +LARV ++ R+   +NN
Sbjct: 70  REIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRK---TNN 126

Query: 125 RAET----GPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             E+    G + +          +GE+   P +E  +L YL+ N    +++ ++ + ++G
Sbjct: 127 MVESIIEIGDLVINDTSHSVSNSKGEIELAP-KEYDLLVYLIKNNKIALSREKLLNEVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   ++  +++HI  LRK    K+G + + + R +GY +D
Sbjct: 186 -YDFLGDDRTIDTHIKNLRK----KIGKNAIKTIRGIGYKLD 222


>gi|256371881|ref|YP_003109705.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008465|gb|ACU54032.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 225

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP+I +S   +    +   + G DD V KP   RE+LARV AI RR++
Sbjct: 62  LEVARAIRHRSTVPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARVRAIERRVE 121

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + + A       V  D R  +V  +  P  L  RE  +L Y  A+    + + ++   +
Sbjct: 122 ANPSSAAALSFNGVDWDPRARQVLRDGVPVALTNREFDLLGYFFAHPATALTRRELLDGV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  +   ++  V+ H+ +LRKKL   +    V     +GY  D
Sbjct: 182 WGP-EWYGDDRTVDVHVLQLRKKLGGAIAISTVWG---VGYRFD 221


>gi|297567507|ref|YP_003686479.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851956|gb|ADH64971.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 226

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 12/215 (5%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL+ +G      DDG+ ++        + +      D+  ++  L    +   +L R +R
Sbjct: 14  ALIAEG----LRDDGLMVDHAPDAAIGQGMAELEAYDLLILDVMLPEGPQAGFDLARTLR 69

Query: 69  AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
               ++P++ ++    + + L   D+G DD + KP   RE+ AR+ A+ RR K       
Sbjct: 70  NQRDKIPILFLTARGDMDSKLTGLDTGGDDYLTKPFDFRELRARIRALVRRAKGEAANLI 129

Query: 128 TGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
             P     D    +V   G+  PL  RE  ++E L  N G+  ++  +   ++    E V
Sbjct: 130 PLPKGYVLDLSAHQVLKGGQPVPLTPREYALVECLGLNPGRAYSRNSLIERVWPGESE-V 188

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VV+ ++S LR+    KLG D V++ R LGY +
Sbjct: 189 DTKVVDVYVSSLRR----KLGEDFVETVRGLGYRL 219


>gi|154687605|ref|YP_001422766.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
 gi|154353456|gb|ABS75535.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
          Length = 225

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   +R+ + +P++ ++        +  F SG DD + KP    E+ ARV A+ +R +
Sbjct: 61  FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  +  T G + +    R     G     LPRRE  +L  L     K  ++ Q+   I+
Sbjct: 121 ITAEKLLTIGTVTLDKQSRTVTRGGGAGLTLPRREFELLFKLAGYPNKTFSREQLIEDIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G FD   +E  V+ HI +LR++   K     + + R LGY
Sbjct: 181 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGY 219


>gi|104782628|ref|YP_609126.1| transcriptional regulator of kdp operon [Pseudomonas entomophila
           L48]
 gi|95111615|emb|CAK16336.1| transcriptional regulator of kdp operon [Pseudomonas entomophila
           L48]
          Length = 231

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 14/164 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G++VL   R +R  S VP++ +S   S    +D  D G +D V KP   +E LARV A+ 
Sbjct: 63  GQQVL---RELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119

Query: 117 R---RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   ++  + + A  GP+ V    R   ++G    L R+E  +L  L  + G+ + + Q+
Sbjct: 120 RQAPQVGSATSTASFGPLVVDFAFRKVTLEGVEVSLTRKEYALLAQLAGHPGRVITQQQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
              I+G        +V ++H  ++    LR KLG DP  + RF+
Sbjct: 180 LKDIWG------PTHVDDTHYLRIVVGHLRQKLGDDPT-APRFI 216


>gi|330976281|gb|EGH76342.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 229

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 24/213 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  IA+     + + G++ +E E   Q+       + D+  ++  L   
Sbjct: 6   ILIVDDEAPIRE-MIAV----ALEMAGYDCIEAENSQQAHPIIVDRKPDLILLDWML--P 58

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   ++  A   PI V     DP      + G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRRAGPTDGEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|295089945|emb|CBK76052.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 231

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 14/210 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DDR +V+   I L G+    ++ ++ LE  E L++    +V+ +   ++  G   
Sbjct: 4   ILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKT---HEVNLMIVDVMMPGLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +     +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 61  IRTTLKVRETSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 120

Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              N       RV+  G        ++  V GE+  L   E  IL  L+ N GK  +  Q
Sbjct: 121 QLGNMNTQSDSRVYKCGGLQINDENKEVLVDGELIKLTPIEYNILLLLVKNAGKVFSIDQ 180

Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKL 201
           I+  I+   +EA+  +N V  HI  +R+K+
Sbjct: 181 IYEEIWN--EEAIGADNTVAVHIRHIREKI 208


>gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
 gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
          Length = 235

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 14/219 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V+ D++A+VK    +L  DD    E   + + EE L+ +  ++   I   L+      
Sbjct: 11  VLVVDDEKAIVKGIKFSLEQDDA---EVSCAYDGEEALELAKSQEFDIILLDLMLPKIDG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R IR  S VP+I I+        +   + G DD + KP +  E+ AR+ AI RR  
Sbjct: 68  LSVCRQIREFSNVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIMRRNS 127

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  + ++      G +R+  DGR   +      L  +E  +LE L+ N  K   +  + 
Sbjct: 128 FNLKKEQSDRVIIVGDLRLDRDGRRLFIGDREVNLTAKEFDVLELLVMNPNKVYGRDNLL 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           + ++G ++   +   V+ HI +LR+K+ +    DP + K
Sbjct: 188 NIVWG-YEYPGDARTVDVHIRRLREKIED----DPSNPK 221


>gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     +
Sbjct: 68  IREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNSSI 127

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY- 178
            +N++  E G + V +D R   ++G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 128 EHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFAILELLARNKGIVLSVAKIYEAVWE 187

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208


>gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K  N   
Sbjct: 68  IREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTNT 127

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E G + V +D R   ++G    L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 128 DNDKSILEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIYEAVWK 187

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208


>gi|226310545|ref|YP_002770439.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093493|dbj|BAH41935.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 251

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 25/206 (12%)

Query: 24  VSLEGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80
           V+ +G   L+    EEW       DV  ++  L   G   + + + IR+  + P+I ++ 
Sbjct: 56  VAHDGHKGLKLALQEEW-------DVILLDVML--PGLDGIAVCQKIRSVKKTPIIMLTA 106

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG----PIRVFSD 136
             S+   +   DSG DD + KP    E+LAR+  ++RR +   N   T      + V  +
Sbjct: 107 RDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEEQENVPRTMLAHRGLVVQIE 166

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
           GR      +   L +RE  +L   M N  + + +  +   ++G F+ AVE NVV+ ++  
Sbjct: 167 GRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTVWG-FEAAVETNVVDVYV-- 223

Query: 197 LRKKLRNKLGFDPVDSK----RFLGY 218
             + LRNK+ F   DS     R +GY
Sbjct: 224 --RYLRNKIDFPNEDSYISTVRGIGY 247


>gi|182417947|ref|ZP_02949257.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237669309|ref|ZP_04529291.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378256|gb|EDT75790.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237655196|gb|EEP52754.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 235

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-- 124
           IR  +  P++ ++           F +G DD ++KP  + E L RV A+ RR     +  
Sbjct: 72  IRKKTMAPILFLTARTQESDKAIGFSAGGDDYLSKPFSNAEFLMRVKALIRRYSQYGSIP 131

Query: 125 RAETGPIRVFSDG------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ PI + SD       +   V G + PL   E  ILE L  NR K  +   I+S+I+
Sbjct: 132 TQQSNPILLVSDMVINTDEKTVSVDGVLIPLTSTEYDILELLALNRKKIFSMENIYSSIW 191

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
                   +N +  HI  LRKK+
Sbjct: 192 NDSYIGASDNAIMVHIKNLRKKI 214


>gi|15887773|ref|NP_353454.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325291858|ref|YP_004277722.1| Phosphate regulon transcriptional regulatory protein phoB
           [Agrobacterium sp. H13-3]
 gi|15155345|gb|AAK86239.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325059711|gb|ADY63402.1| Phosphate regulon transcriptional regulatory protein phoB
           [Agrobacterium sp. H13-3]
          Length = 227

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +    +G DD V KP    E++ARV A+ R
Sbjct: 62  IELCRRLRMRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  V ++  + G I +  +      +     L   E R+LE+LM + G+  +++Q+  
Sbjct: 122 RARPEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMTSPGRVFSRSQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSHMQDVIRTVRGAGYSME 226


>gi|37679606|ref|NP_934215.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
 gi|37198350|dbj|BAC94186.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
          Length = 219

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 22/219 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           +L K G++     DG+  +       EEW        +  ++   + KG        I  
Sbjct: 19  SLEKTGWVPELSQDGI--DALYRATSEEWDAMVLDLGLPKLDGLTVLKG--------IRD 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +  
Sbjct: 69  ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             I   S D R  +V  QG+   L   E +++ Y + N  K +++T++   IY   FD  
Sbjct: 127 MQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFVHNADKVISRTELVEHIYKQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + N +E  I ++RKK+   +    + + R LGY ++ N
Sbjct: 186 -DSNTIEVFIGRIRKKIAPNI----IKTVRGLGYQLNAN 219


>gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R IR  S VPLI ++        L   + G DD + KP   RE++ARV A+ RR  
Sbjct: 61  LDVAREIRRQSDVPLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLRRFN 120

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S+  ++    G + V  D    +   E   L   E ++L  LMA  G+   + Q+  AI
Sbjct: 121 RSSGGSQILREGNLEVDLDTHTVKRGDEEIFLTPTEFQLLSTLMAQPGRVFTRLQLLEAI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
            G+  E  E   +++HI  LR K+
Sbjct: 181 QGVAYEGYERT-IDAHIKNLRAKI 203


>gi|302874399|ref|YP_003843032.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690997|ref|ZP_07633443.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577256|gb|ADL51268.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 227

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 4/143 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R  S+V +  ++   SL   ++  + G D+ + KP+  RE+ ARV A++RR+ V
Sbjct: 62  EVCKILRKISEVYIFMLTAKASLSDKIEGLNIGADEYLIKPLSPRELTARVNALFRRIGV 121

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +A       + +    R  ++ G    L   E  IL  L ANRG+   +  I   ++
Sbjct: 122 EEPKALSFSNSHLVINKTDRSVKIDGIEVSLTPNEFDILYLLAANRGRAFTREDIIERVF 181

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
            + D    +  +++HI  LRKK+
Sbjct: 182 TM-DFEGSDRTIDAHIKNLRKKI 203


>gi|254489992|ref|ZP_05103187.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224465077|gb|EEF81331.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 227

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 10/151 (6%)

Query: 80  DYPSL--------QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           DYP L        Q  ++  +SG DD + KP H  E+LAR+ A+ RR    +N     GP
Sbjct: 72  DYPILILTARGRWQDKVEGLESGADDYLVKPFHFEELLARLNALSRRASGWANPTLCCGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +    +      +V  L   E R+L YL+ + G+ ++KT++   IY   D+  + NV+
Sbjct: 132 ICLNPSTQQVTKHDQVIDLTAYEYRLLHYLLLHAGEVISKTELTDHIYEQ-DQDRDSNVI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  + +LR KL      +P+++ R  GY ++
Sbjct: 191 EVFVKRLRGKLDPDKALNPIETLRGRGYRLN 221


>gi|326203105|ref|ZP_08192971.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986751|gb|EGD47581.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 230

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 7/154 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR  S VP+I I+        +   D G DD + KP    E++AR+ AI RR+ 
Sbjct: 62  FEVCREIRQKSNVPIIMITAKGEDSDRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVD 121

Query: 121 VS---NNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S   N +    P + +     + +V G    L ++E  IL  L  N GK  ++  +  +
Sbjct: 122 NSNEDNKKVTQHPGLEINIAEYEVKVNGSPVNLTKKEIEILWLLATNPGKVFSRDNLLDS 181

Query: 177 IYGLFDEAVEENVVESHISKLRKK--LRNKLGFD 208
           ++G ++   +   V++HI +LR K  + +K+ +D
Sbjct: 182 VWG-YEYFGDARTVDTHIKRLRAKIDISDKISWD 214


>gi|307243687|ref|ZP_07525827.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492896|gb|EFM64909.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 217

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S++P++ ++ +   +  +D F +  D  + KP     + ARV ++ ++  
Sbjct: 59  LEVLKEIRKTSKLPILILTAFSDEEYKIDAFTNLADGYIEKPFSLPVLKARVDSLIKKNF 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   I V       ++ GE   +  +E  IL+YL+ N G+ + + QI   ++  
Sbjct: 119 GRIEKFEYKNIEVNFTSYTAKINGESIDINAKELEILKYLLDNEGQALTRMQIIDNVWKE 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 179 TEEIPFDRVIDVYIKELRKKLE----LDCIVTIRNVGYKLE 215


>gi|253583326|ref|ZP_04860524.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
 gi|251833898|gb|EES62461.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
          Length = 221

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 84/161 (52%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK 120
           + R IR  SQVP+I ++        L  F+   D+ + KP + + ++A+V A+ RR    
Sbjct: 63  VCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGKI 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V     E G + + +  R+ ++   +  L  +E  +L + + N+G  +++ +I ++++G 
Sbjct: 123 VDKTYLEFGDLIIDTSKREVKLGDVILELTPKEYDLLYFFIENKGLALSREKILNSVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +   V++HI    K+LR K+G + + + R  GY  +
Sbjct: 182 WDYFGDSRTVDTHI----KRLRKKIGDNFIQTVRGFGYKFE 218


>gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
 gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
          Length = 237

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SNN  +      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           +F  ++   D  +E +N V  HI KLRKK+
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKI 210


>gi|213971813|ref|ZP_03399916.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas syringae pv. tomato T1]
 gi|301382522|ref|ZP_07230940.1| transcriptional activator CopR [Pseudomonas syringae pv. tomato
           Max13]
 gi|213923428|gb|EEB57020.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas syringae pv. tomato T1]
          Length = 227

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 5/156 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
           A S VP++ ++    +   +   + G DD + KP    E+LARV ++ RR   + N    
Sbjct: 69  AGSLVPVLFLTARDGVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGAGAPNLTSI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           + G + V    R     G+   L  +E  +LE LM  RG+ ++K+ I S ++ + FD   
Sbjct: 129 KIGDLEVDLLKRRASRSGQRIDLTAKEFALLELLMRRRGEVLSKSLIASQVWDMNFDS-- 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + NV+E  I +LR K+ +      + + R +GY +D
Sbjct: 187 DTNVIEVAIRRLRAKIDDDFDTKLIQTSRGMGYMLD 222


>gi|187778014|ref|ZP_02994487.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC
           15579]
 gi|187774942|gb|EDU38744.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC
           15579]
          Length = 223

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L ++IR +++ VP++ I+   +     + F  G DD + KPI   E++ RV A+ RR ++
Sbjct: 63  LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQI 122

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N  R   G      D    +   +   LP++E  ++  L++   K   + Q+   I+G+
Sbjct: 123 INERRIVIGETTFLYDFLSAKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGI 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E  +   V+ HI++LR++ +    F+ + + R LGY +
Sbjct: 183 ESET-DPRTVDVHINRLRERFKYNKDFNII-TIRGLGYKV 220


>gi|52142897|ref|YP_083932.1| response regulator [Bacillus cereus E33L]
 gi|51976366|gb|AAU17916.1| response regulator [Bacillus cereus E33L]
          Length = 235

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 65  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSYLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRIVSREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     DP+++ R +GY   I W+
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIKDPIETIRSVGYRLHITWD 230


>gi|68053219|sp|Q8GP20|RSSB_SERMA RecName: Full=Swarming motility regulation protein rssB
 gi|59939896|gb|AAN28326.2| response regulator protein RssB [Serratia marcescens]
          Length = 219

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 6/151 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127
           A   +P+I ++    +++ ++  DSG +D + KP    E+++RV A+ RR+   ++    
Sbjct: 69  AGQNIPIIILTARDRIESLVNSLDSGANDFLAKPFALPELISRVKAVNRRMAGFASQTWS 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +        +  E+  L ++E  +L  LM   G  V K  +   ++G  D +VE 
Sbjct: 129 LGALYLDPVNHQVMLDNELLMLSKKEYHLLHELMRCAGTVVRKAVLEQRLFGHGD-SVES 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           N +E H+  LR+    K+G D V + R +GY
Sbjct: 188 NSLEVHMHNLRR----KIGKDRVITVRGIGY 214


>gi|17545269|ref|NP_518671.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17427560|emb|CAD14078.1| probable response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 232

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+    + +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR    
Sbjct: 66  LKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGG 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP+     GR   ++ ++  L  RE  +LE L++  G+ V+K Q+   + G +
Sbjct: 126 GATLVRHGPLAFDQVGRIAYIRDQMVDLSARELGLLEILLSRAGRLVSKEQLVDHLCG-W 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E V  N +E ++ +LRKK+  ++    + + R LGY ++
Sbjct: 185 GEEVSNNAIEVYVHRLRKKI--EVDGIRIATVRGLGYCLE 222


>gi|269968140|ref|ZP_06182175.1| DNA-binding response regulator [Vibrio alginolyticus 40B]
 gi|269827271|gb|EEZ81570.1| DNA-binding response regulator [Vibrio alginolyticus 40B]
          Length = 219

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +    I 
Sbjct: 73  TPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPVMQIG 130

Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
             S D R  +V  QG+   L   E +++ Y M N  K +++T++   IY   FD   + N
Sbjct: 131 DLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR--DSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 189 TIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|262372854|ref|ZP_06066133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262312879|gb|EEY93964.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 229

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 4/129 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           +P++ ++   +L   L  F +G DD + KP    E++ R+ A+ +R   +VS+++ +   
Sbjct: 77  IPILMLTARDTLDDKLKGFTAGTDDYLVKPFDFNELVMRIRALIKRSLGEVSSSKIQIHD 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + S  +     G+   LPR + ++L+ LM N  K + K +I   ++G  DE  E + +
Sbjct: 137 LILDSSTQTVTRAGQHIELPRIQFKLLKILMRNSPKVITKQEIIIELWG--DEEPESDAL 194

Query: 191 ESHISKLRK 199
            SHI  LRK
Sbjct: 195 RSHIYNLRK 203


>gi|302874361|ref|YP_003842994.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307691040|ref|ZP_07633486.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577218|gb|ADL51230.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 228

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 5/137 (3%)

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSN-NRAETGPIRVFSDGRDPEVQGE 145
           L  F+ G +D + KP    E+ AR+ AI + + K+   N  E   I++    +   +  E
Sbjct: 88  LKAFNLGANDYLTKPFFLEELKARIIAILKSMGKIKKENLIEFMDIQIDIKTKTAYIGDE 147

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              +  +  ++LEYL+ N+G  + K QIF  + G   +A  E ++E +IS+LRK+L    
Sbjct: 148 KLDINEKSYKLLEYLVINKGVLLFKEQIFDNVCGYGSDASTE-IIEVYISRLRKQLA-PF 205

Query: 206 GFDP-VDSKRFLGYSID 221
            +D  + +KR +GY +D
Sbjct: 206 NYDKYIVNKRGMGYMLD 222


>gi|126699135|ref|YP_001088032.1| two-component response regulator [Clostridium difficile 630]
 gi|254975088|ref|ZP_05271560.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092477|ref|ZP_05321955.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255100562|ref|ZP_05329539.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306500|ref|ZP_05350671.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255314216|ref|ZP_05355799.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255516894|ref|ZP_05384570.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649995|ref|ZP_05396897.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683146|ref|YP_003214431.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686744|ref|YP_003217877.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520071|ref|ZP_07406418.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115250572|emb|CAJ68396.1| Two-component response regulator [Clostridium difficile]
 gi|260209309|emb|CBA62696.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212760|emb|CBE03894.1| two-component response regulator [Clostridium difficile R20291]
          Length = 224

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 7/159 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           IR  S+VP+I IS   S    +   + G DD + KP     ++A+V A+ RR    V NN
Sbjct: 67  IRKISKVPIIFISSRNSNMDVIMGVNLGADDYIQKPFSVDVLVAKVNALLRRTYNFVDNN 126

Query: 125 RAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             +     V  D     +  E     L + E +IL  LM  +G+ V++ ++   ++   D
Sbjct: 127 SNQIIHNGVTLDLSTATINYEDNTIELTKNEIKILHELMKYKGQIVSRNKLMKKLWD-ND 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             V++N +  +++++R KL N++G  D +++KR LGY I
Sbjct: 186 WFVDDNTLTVNVNRIRSKL-NEIGLEDFIETKRGLGYII 223


>gi|91223635|ref|ZP_01258900.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
 gi|91191721|gb|EAS77985.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
          Length = 218

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 3/142 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR    ++P++ ++    ++  +   D G DD + KP    E+LAR+  + RR 
Sbjct: 60  LEVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQ 119

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             S     + G + +    +          L R E +IL  LM N G+  +K Q+  +++
Sbjct: 120 SGSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNVGRVQSKEQLQQSLH 179

Query: 179 GLFDEAVEENVVESHISKLRKK 200
           G +DE   +N +E HI  LRKK
Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKK 200


>gi|257869329|ref|ZP_05648982.1| DNA binding response regulator [Enterococcus gallinarum EG2]
 gi|257803493|gb|EEV32315.1| DNA binding response regulator [Enterococcus gallinarum EG2]
          Length = 230

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  S+VP+I +S        +   + G DD + KP     +LA++ A+ RR  + ++ +
Sbjct: 67  IRNISEVPIIFLSSMDQQMNQIMAMNMGADDYLTKPFDLAFVLAKIQALLRRSYQYTHQQ 126

Query: 126 AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +T   G +         + + E  PL   E RIL  L+  +GK V K  I   ++   +
Sbjct: 127 VQTFSLGDVTFHPIENLLKSKTESLPLSPNESRILSLLLQQQGKIVPKETIIEMLWN-SE 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E ++ N +  ++++LRKKL      D + + +  GY I+
Sbjct: 186 EFIDNNTLAVNMTRLRKKLSQTGLSDLIQTVKNKGYLIE 224


>gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 229

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+    S VP++ ++    ++  +   D G DD + KP    E+LARV A+ RR K S +
Sbjct: 67  RLREGGSTVPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLRR-KDSGS 125

Query: 125 RAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           R+ +  + +F       D R+    G+   L  +E  +L   M N  + + +  I   I+
Sbjct: 126 RSGSQRL-IFEDIIMDLDSREVTRAGQRLELTAKEFELLHLFMQNPKRLLTRDLIMDKIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G +D + E NV+E +I+ LR+K     G   + + R  GY
Sbjct: 185 G-YDYSGESNVLEVYIAMLRQKTEEHGGKRVIQTIRGAGY 223


>gi|257791289|ref|YP_003181895.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317490425|ref|ZP_07948908.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325831281|ref|ZP_08164573.1| transcriptional regulatory protein afsQ1 [Eggerthella sp. HGA1]
 gi|257475186|gb|ACV55506.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316910469|gb|EFV32095.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325486882|gb|EGC89329.1| transcriptional regulatory protein afsQ1 [Eggerthella sp. HGA1]
          Length = 223

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 12/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE-AFLIGKGEKV 60
            +L++D A +      L   +G      +  +    L  S R D++ ++ A   G G  V
Sbjct: 3   MLLVEDDAAIVASLTDLLRSEGYETRCADGQDAAVELLRSERFDLALVDVALAQGNGFAV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               +       V  +  SD     +T+   D G DD + KP   RE+L+R+ ++ RR  
Sbjct: 63  CAAAKACDPAPAVIFLTASDDEF--STVAGLDMGADDYIAKPFRARELLSRIRSVLRRTN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++    G + + +        G    L   E R+L     +RGK V +  + +AI+  
Sbjct: 121 AASSLLRLGDVEIDAGTACVRKAGRDLALTALEYRLLLLFAQSRGKLVTREHVRNAIWDS 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGY 218
             E V +N +  ++    K+LR+K+  DP + +     R LGY
Sbjct: 181 AGEYVSDNTLSVYV----KRLRDKVEDDPAEPRLILTVRGLGY 219


>gi|148378896|ref|YP_001253437.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931468|ref|YP_001383278.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936439|ref|YP_001386827.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288380|emb|CAL82457.1| two component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927512|gb|ABS33012.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932353|gb|ABS37852.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 223

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L ++IR +++ VP++ I+   +     + F  G DD + KPI   E++ RV A+ RR ++
Sbjct: 63  LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQI 122

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N  R   G      D    +   +   LP++E  ++  L++   K   + Q+   I+G+
Sbjct: 123 INERRIVIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGI 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E  +   V+ HI++LR + ++   F+ + + R LGY +
Sbjct: 183 ESET-DPRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220


>gi|83718179|ref|YP_439959.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83652004|gb|ABC36068.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 255

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R    +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR      RA+
Sbjct: 103 RRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---QTGRAQ 159

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           T    G +R+          G+   L  +E  +L  LM   G  +++ Q    +Y  + E
Sbjct: 160 TVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS-WGE 218

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 219 EIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 251


>gi|296161178|ref|ZP_06843987.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295888519|gb|EFG68328.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 224

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA  S+ P+I ++   SL   +   D+G DD + KP    E+LAR+ A+ RRL
Sbjct: 60  IDVLRSLRAKGSKAPVIILTARDSLDDRIAGLDAGADDYLVKPFEIGELLARIRAVTRRL 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + R  +G + + S+            L  RE  +L  LM   G  ++++++   +Y
Sbjct: 120 GDHGDARMTSGNLTLDSNTHLAVYGDTECNLTGREFALLSALMMKPGTVLSRSELERKVY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++E VE N VE  I  +RK    KLG   + + R +G+ +D
Sbjct: 180 A-WEEQVESNAVEVVIHGIRK----KLGASVIRNVRGVGWLVD 217


>gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 235

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 21/203 (10%)

Query: 34  FEEWLQSSAREDVSAIEAFLIGKGEKVLELP---------RIIRAHSQVPLIGISDYPSL 84
           FE    ++ RE + A E F        + LP         R+  A    P++ ++     
Sbjct: 32  FEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFTVTRRLRAAGRHFPVVFLTARDGT 91

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPE 141
           +  +     G DD V KP    E++AR+ A+ RR    ++ A       + +  D  +  
Sbjct: 92  EDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTASLDDDAAVLRVDDLELDDDAHEVR 151

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             GEV  L   E ++L YLM N  + ++K QI   ++  +D   + ++VES+IS LR+K+
Sbjct: 152 RGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHVWE-YDFNGDASIVESYISYLRRKI 210

Query: 202 ----RNKLGFDPVDSKRFLGYSI 220
               R K+    + +KR +GY +
Sbjct: 211 DVGGREKM----IHTKRGVGYML 229


>gi|261254101|ref|ZP_05946674.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
 gi|260937492|gb|EEX93481.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
          Length = 230

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 16/119 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-------ETGPIRVFSDGRDPEVQGEV 146
           G DD + KP   RE++AR+ AI RR + SNN+A       E   I+ F   ++   QGE+
Sbjct: 93  GADDYLPKPFSDRELMARIRAILRRTQSSNNKAAKNSDCIEYQDIQAFPGKQEAYCQGEL 152

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
             L   E  +L + + + G  + K  +   + G     FD A     ++ H+S LRKKL
Sbjct: 153 IDLTTTEFALLAHFIQHPGDTLTKEALSLDVLGKRLAAFDRA-----IDMHVSNLRKKL 206


>gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
 gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
          Length = 232

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQT-TLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R IR  S VP++ ++   SL+T  ++   +G DD + KP  + E++AR+ A+ RR 
Sbjct: 60  IEVCRRIREKSYVPILFLTA-KSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRC 118

Query: 120 KVSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +V +N            E   + +++   +    G    L  +E +IL  L+++  K  +
Sbjct: 119 RVYDNADASDTTASSTIERCGLTLYTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFS 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
              IF +++         N +  HI  LR KL    G
Sbjct: 179 TQNIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCG 215


>gi|194015744|ref|ZP_03054360.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
 gi|194013148|gb|EDW22714.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
          Length = 231

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  + +RA S VP++ ++   S     +   +G DD + KP    E+ ARV A  RR  
Sbjct: 61  IETCQQMRASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYT 120

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           V   + E        G +RV  +  +     +   L   E R+L+ LM+ R K  +   I
Sbjct: 121 VYQEKKEQEETFLVGGKLRVSEEFNEVWKGNQQLKLSDLEYRMLKLLMSRRNKIFSAQNI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + +++G        N V  HI KLR K+ +
Sbjct: 181 YESVWGQPYFYCSNNTVMVHIRKLRAKIED 210


>gi|167910824|ref|ZP_02497915.1| putative two component system, response regulator [Burkholderia
           pseudomallei 112]
          Length = 241

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           + +S +P++ +++       +   ++G DD V KP   +E +ARV A+YRR   +   +E
Sbjct: 72  KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 131

Query: 128 ---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               GP R+ +  +      E   L  +E  I+E L  N G+ V++ ++   ++G   + 
Sbjct: 132 LIEIGPYRIQTSEKVVYFHHEAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 191

Query: 185 VEENVVESHISKLRKKL 201
                +++HI ++R+KL
Sbjct: 192 AAFRTLDTHIYRIRRKL 208


>gi|170019594|ref|YP_001724548.1| DNA-binding transcriptional regulator BaeR [Escherichia coli ATCC
           8739]
 gi|169754522|gb|ACA77221.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
          Length = 240

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEETDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|111020343|ref|YP_703315.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110819873|gb|ABG95157.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 222

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S VP+I ++     ++ +     G DD + KP    E+ AR+  + RR  
Sbjct: 61  LEVLRQLRQVSAVPVIILTARDDERSVVRGLRGGADDYLVKPARMSELFARIEVVRRRSM 120

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                A     TG +RV  D R   V G    L  +E  +LE L+ N G  V++ Q+   
Sbjct: 121 AVEGGAPREVVTGDVRVDLDSRTVTVAGTEVDLTSKEFALLEILLENPGAAVSRQQLMDR 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G    AV  + ++ HI  LR KL ++ G   + + R  GY
Sbjct: 181 VWGDAFVAVSRS-LDVHIGTLRAKL-DRPGL--ISTIRGFGY 218


>gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 225

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 5/179 (2%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           R DV  ++  L G  + V  L R+  A  + P+I ++   +    +   D G DD + KP
Sbjct: 48  RPDVVVLDIMLPGM-DGVGVLRRLREAGHRTPVIMLTARDATGDKVHSLDRGADDYLTKP 106

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LAR+ A+ RR++        G + V +  R+    G    L  RE  +LE L+A
Sbjct: 107 FEVEELLARMRAVLRRVE-GEEVLRVGSLTVDTSAREVRRGGRAVALTAREYDLLE-LLA 164

Query: 163 NRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             G+RV ++ +I   ++G     V+ NVV+ ++  LR+KL        + + R +GY +
Sbjct: 165 RNGRRVLSREKILDRVWG-EGAGVDPNVVDVYVGYLRRKLEGPGEGRLIHTVRGVGYVL 222


>gi|91229001|ref|ZP_01262867.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
 gi|254230618|ref|ZP_04923975.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262394555|ref|YP_003286409.1| two-component system response regulator QseB [Vibrio sp. Ex25]
 gi|91187465|gb|EAS73803.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
 gi|151936858|gb|EDN55759.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262338149|gb|ACY51944.1| two-component system response regulator QseB [Vibrio sp. Ex25]
          Length = 219

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +    I 
Sbjct: 73  TPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPVMQIG 130

Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
             S D R  +V  QG+   L   E +++ Y M N  K +++T++   IY   FD   + N
Sbjct: 131 DLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR--DSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 189 TIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|241765175|ref|ZP_04763161.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241365180|gb|EER60041.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 221

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA  +  P++ ++   ++   +   D+G DD + KPI   E+ AR+ A+ RR 
Sbjct: 60  MDVLRQMRARRNTTPVLVLTARDAVPARIAGLDAGADDYLIKPIDLHELAARLRALVRRA 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S  R   G + +        V G+   L  RE  +L  L+ N G+ +++ Q+   +Y
Sbjct: 120 HGQSETRLAAGNVVLDPAAHQVLVDGQPVDLSNREYDLLHALLLNAGRVLSREQLEQRLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               E +  N VE HI  LR+KL   L    +++ R +GY I
Sbjct: 180 EWGSE-INSNAVEVHIYHLRRKLGTPL----IETVRGVGYRI 216


>gi|238025565|ref|YP_002909797.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Burkholderia glumae
           BGR1]
 gi|237880230|gb|ACR32562.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Burkholderia glumae
           BGR1]
          Length = 229

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GP 130
            VP+I ++     QT L    +G DD + KP    E+LAR+AA+ RR  +      T G 
Sbjct: 73  NVPVIVLTARDDEQTVLTALRAGADDYLVKPARAAEMLARIAAVARRYGIGGKAPLTLGA 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
             +        V G    L ++E  +  Y+  + G+ +++  + + ++G+  + V+   V
Sbjct: 133 YEIDIQRVRIAVNGSSVDLTQKEFDLAVYMFQSPGQLLSRDHLLNRVWGVHAD-VDTRTV 191

Query: 191 ESHISKLRKKLR 202
           ++H+S+LRKKL+
Sbjct: 192 DTHVSRLRKKLQ 203


>gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
 gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
          Length = 237

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 87/172 (50%), Gaps = 11/172 (6%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + +R+  +QVP++ ++        +   + G DD + KP   RE+ AR+ AI RR 
Sbjct: 62  VEVCKAVRSEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAILRRS 121

Query: 120 KV--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +          N     G +++  +  +    GE+  L  +E  +L YL+  +G+ + + 
Sbjct: 122 QALRQHESEKENKEIIIGKLKILPEHFEAYRNGELIDLTPKEFELLIYLIERQGRVITRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
            + ++++  ++ A +  +V+ HIS LR+K+  N      + + R LGY +D+
Sbjct: 182 HMLNSVWN-YEFAGDSRIVDVHISHLREKIEENPKQPQYIKTVRGLGYKLDY 232


>gi|222087598|ref|YP_002546135.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725046|gb|ACM28202.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 218

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 15/167 (8%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R IR   + VP++ ++   +++  ++  D G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  MEVLRGIRQRGNSVPVLLLTALDAVRQKVEGLDEGADDYLVKPFDLDELLARMRALIRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEV----QGEV-FPLPRRERRILEYLMANRGKRVAKTQIF 174
              + R E+  IR      DP      +G+V      +E  +L+ LM   G+ V K  I 
Sbjct: 119 --RDGRTES-VIRCGDIEVDPSAMVARKGDVQVHTTAKEFHLLKLLMERSGRYVTKNDIE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A+Y   +  VE N +E  I  LRK    KLG D + S R +GY I+
Sbjct: 176 YALYD-AESTVESNTIEVTIYNLRK----KLGSDFIKSIRGVGYMIE 217


>gi|85058937|ref|YP_454639.1| DNA-binding transcriptional regulator BasR [Sodalis glossinidius
           str. 'morsitans']
 gi|84779457|dbj|BAE74234.1| two-component system response regulator [Sodalis glossinidius str.
           'morsitans']
          Length = 222

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 7/218 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+++G       +  + E  ++L  + W   ++      I    +  G+ + 
Sbjct: 3   ILVIEDDKLLREGLQQALEQESFACECASNLG-QSWPLLTSTTYSLIILDLGLPDGDGMT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L ++ R  + VP++ ++   ++   +   D G DD + KP    E+LAR  AI RR + 
Sbjct: 62  LLEKLRRQGNGVPVLILTARDAIDERVRGLDFGADDYLIKPFALSELLARSRAIIRRHQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VSNN      I +     D  V G+   L  +E  IL  LM   G R+ +  +   +Y  
Sbjct: 122 VSNNLLWVDDISLDLTHHDVTVDGKAVILTPKEFAILSRLMLRAGHRIHREILHQDLYS- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +D+    N +E HI  LR+    K+G   + + R  GY
Sbjct: 181 WDDDPSSNSLEVHIHHLRQ----KIGRGRIQTLRGFGY 214


>gi|53719294|ref|YP_108280.1| putative two component system response regulator [Burkholderia
           pseudomallei K96243]
 gi|167815668|ref|ZP_02447348.1| putative two component system, response regulator [Burkholderia
           pseudomallei 91]
 gi|52209708|emb|CAH35668.1| putative two component system, response regulator [Burkholderia
           pseudomallei K96243]
          Length = 237

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124
           + +S +P++ +++       +   ++G DD V KP   +E +ARV A+YRR    +  + 
Sbjct: 68  KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 127

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E GP R+ +  +      E   L  +E  I+E L  N G+ V++ ++   ++G   + 
Sbjct: 128 LIEIGPYRIQTSEKVVYFHHEAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 187

Query: 185 VEENVVESHISKLRKKL 201
                +++HI ++R+KL
Sbjct: 188 AAFRTLDTHIYRIRRKL 204


>gi|310818000|ref|YP_003950358.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391072|gb|ADO68531.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca
           DW4/3-1]
          Length = 235

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 6/136 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRV-FSDGRDPEVQGEV 146
           F+ G DD V KP   RE+LAR+ A+ RR     VS         RV  +  R     G+ 
Sbjct: 98  FEVGADDYVPKPYRLRELLARIRALARRGAGAPVSTEVLTFDRFRVDLASRRILNATGQA 157

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKL 205
             L R E  +L +L+ + GK + + QI S+++G  D  V+ + V++ +S LRKKL     
Sbjct: 158 LELTRTEFDLLVFLLRHAGKALTRDQILSSVWG-EDVVVDGHTVDNFVSNLRKKLEWTST 216

Query: 206 GFDPVDSKRFLGYSID 221
               + S R +GY +D
Sbjct: 217 SRFEIRSVRGVGYRLD 232


>gi|298248013|ref|ZP_06971818.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550672|gb|EFH84538.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 225

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 5/157 (3%)

Query: 67  IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +R H + +P++ ++    L   +   D+G DD + KP   RE+ AR+ A+ RR + +   
Sbjct: 66  LRNHRRTMPILLLTALGELDHRVTGLDTGADDYLTKPFAFRELEARIRALLRR-ESTTKT 124

Query: 126 AETGPIRVFSDGRDPEV-QGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           A    + +  D R  E  +GE + PL  +E  +LEYLM +  + +++T I   ++    E
Sbjct: 125 AALCFLDIMLDTRTHEARRGERMIPLNNKEYALLEYLMRHPRQVLSRTMIAEHVWDCETE 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  NV++ +I  LR+KL      D + + R  GY +
Sbjct: 185 HL-SNVIDVYIRYLRRKLCENHEPDVIHTIRGAGYQL 220


>gi|295097535|emb|CBK86625.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 219

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 17/225 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G+S  GFN   F +     A    +  +A ++      +
Sbjct: 3   ILLVEDDRLIGDGIKA-----GLSKMGFNVDWFTDGKTGQAALYTAPYDAVVLDLTLPEI 57

Query: 62  ELPRIIRAHSQV----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +   I+RA  +     P++ ++   +L   ++    G DD + KP    E+ AR+ A+ R
Sbjct: 58  DGLEILRAWRESGKSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVR 117

Query: 118 RLKVSNNRAETGPIRVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R      R+E    +V  D       ++GE   L  +E  +LE LM N G+ + +  I  
Sbjct: 118 R-SHGQARSELRHGKVMLDPASLVATLEGETLVLKPKEFALLELLMRNAGRVLPRKAIEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  +D+ V  N VE H+  LR+    KLG + + +   +GY++
Sbjct: 177 KLYN-WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 216


>gi|260494215|ref|ZP_05814346.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
 gi|260198361|gb|EEW95877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
          Length = 227

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 5/159 (3%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           DV  ++  L  K  K  EL +  R  +  P+I I+   S+   ++  D G +D + KP  
Sbjct: 50  DVILLDLMLPKKSGK--ELCQEFRKLNNTPIIIITAKDSILDKVELLDLGANDYICKPFA 107

Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
             E+LAR+    R  + S ++       I++    +   ++ E   L + E  ILEY M 
Sbjct: 108 MEELLARIRVATRNKENSVDKQFYLEKDIKLDLSAKRVYLREEEVNLTKTEFLILEYFMK 167

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           N+G   ++ +I   ++G +D   EE +V+ +I+ LRKK+
Sbjct: 168 NKGLSCSREKIIIGVWG-YDFDGEEKIVDVYINSLRKKI 205


>gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 237

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 21/211 (9%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAF------------LIGKGEKVLELPRIIRAHSQVPLIG 77
           +SLE+E +    A + ++A+E              ++ + + +    R+  A + VP++ 
Sbjct: 24  SSLEYEGYRVGLASDGLAALEILEREPYELVLLDVMMPRLDGLTACRRLRAAGNHVPVLM 83

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--------G 129
           ++   ++   +   D+G DD + KP    E+LARV A+ RR  ++   A          G
Sbjct: 84  LTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRRSALTAPAAADDDGGVLLHG 143

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +R+ +  R+    GE   L R E  +LE LM +  + + + QI S ++G FD     N 
Sbjct: 144 DLRMDTASREVTRAGEPLELTRTEYLLLELLMVHPRQVLTREQILSEVWG-FDFEPSSNS 202

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ ++  LR+K         + + R +GY +
Sbjct: 203 LDVYVMYLRRKTEAAGRSRLIHTVRGVGYVL 233


>gi|188588827|ref|YP_001922647.1| DNA-binding response regulator [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251777844|ref|ZP_04820764.1| DNA-binding response regulator [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|188499108|gb|ACD52244.1| DNA-binding response regulator [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082159|gb|EES48049.1| DNA-binding response regulator [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 223

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 6/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R +  +P+I ++   +    L   + G DD + KP + + +LAR+++I +R    
Sbjct: 63  ICREVRKNLDIPIIIVTSRDNEIDELMSMNLGADDFITKPYNTQILLARISSILKRTYKK 122

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N+ +E       I   S+G       +   L + E +IL YL+ N+   V++  +   ++
Sbjct: 123 NDSSEILKYKDLILDLSNGS-VSYNNKYCELTKNELKILAYLIKNQNSIVSRDILMETLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  V++N +  ++++LRKKL +    D ++++R LGY
Sbjct: 182 S-SDIFVDDNTLSVNVTRLRKKLDDIGIKDAIETRRGLGY 220


>gi|187933755|ref|YP_001887663.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund
           17B]
 gi|187721908|gb|ACD23129.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund
           17B]
          Length = 223

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 6/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR +  +P+I ++   S    L   + G DD + KP +   +LAR+++I +R    
Sbjct: 63  ICREIRKNLDIPIIIVTSRDSEIDELMSMNLGADDFITKPYNTEILLARISSILKRTYKK 122

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N  +E       I   S+G           L + E +IL YL+ N+   V++  +   ++
Sbjct: 123 NESSEILRYKDLILDLSNGS-ISYNNNYCELTKNELKILSYLIKNQNSIVSRDILMEILW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  V++N +  +I++LR+KL +    D ++++R LGY
Sbjct: 182 N-SDIFVDDNTLSVNITRLRRKLEDIGIKDAIETRRGLGY 220


>gi|168184125|ref|ZP_02618789.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237794198|ref|YP_002861750.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672851|gb|EDT84812.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261611|gb|ACQ52644.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 223

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L ++IR +++ VP++ I+   +     + F  G DD + KPI   E++ RV A+ RR ++
Sbjct: 63  LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQI 122

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N  R   G      D    +   +   LP++E  ++  L++   K   + Q+   I+G+
Sbjct: 123 INERRIVIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGI 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E  +   V+ HI++LR + ++   F+ + + R LGY +
Sbjct: 183 ESET-DPRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220


>gi|146277961|ref|YP_001168120.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556202|gb|ABP70815.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 230

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 11/154 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP+I +S        +   ++G DD V KP    E++ARV +  RR + S+     G   
Sbjct: 81  VPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRARPSS----VGLTL 136

Query: 133 VFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            F D R DPE       G++  L   E R+L   M   G+  ++ Q+   ++G  D  V+
Sbjct: 137 EFEDIRLDPETHKVHRAGQILKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG-RDIYVD 195

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 196 SRTVDVHVGRLRKALCVHGGEDPVRTVRGAGYAL 229


>gi|126174714|ref|YP_001050863.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|153001013|ref|YP_001366694.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160875726|ref|YP_001555042.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|125997919|gb|ABN61994.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151365631|gb|ABS08631.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160861248|gb|ABX49782.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
          Length = 227

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 3/154 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR          
Sbjct: 72  AGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVIC 131

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           +G +++    +   +  E+  +   E  ILEYLM +  + VAK ++   IYG  D+  + 
Sbjct: 132 SGELKLDLAAKQVTLSDEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDP 189

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 190 NTIEVMVSRLRKKLTRDGIDNPIVTIRGQGYKFN 223


>gi|307943941|ref|ZP_07659283.1| transcriptional regulatory protein TctD [Roseibium sp. TrichSKD4]
 gi|307772782|gb|EFO32001.1| transcriptional regulatory protein TctD [Roseibium sp. TrichSKD4]
          Length = 223

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 6/149 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPI 131
           P++ ++     Q  +   D+G DD + KP    E+ ARV A+ RR K +  R   + G +
Sbjct: 74  PVLLLTARSETQDRVKGLDAGADDYLVKPFEMEELAARVRALGRR-KATAPRQLIKLGTL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           ++  +         V  +PRRE  +L  L   +G+ ++K  +   +YG   E+ +E V+E
Sbjct: 133 KLDVNALQLLHGDTVLDVPRRELVLLSALAEAQGRALSKGALLDHLYGAGSES-DEKVIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++S+LRK+L +  G   +  +R +GYSI
Sbjct: 192 VYVSRLRKRL-SSYGV-SIQVQRGIGYSI 218


>gi|261363894|ref|ZP_05976777.1| DNA-binding response regulator [Neisseria mucosa ATCC 25996]
 gi|288567893|gb|EFC89453.1| DNA-binding response regulator [Neisseria mucosa ATCC 25996]
          Length = 223

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L +I    S+ P++ ++    L + L+  D G DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LTQIRHEGSKTPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRRHSGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S      G + +       EV+GE  P  L  +E  +L+ LM   G  ++++ +   IYG
Sbjct: 123 SQTLLTNGALTLNPATYQVEVKGEDKPVLLSNKEFAVLQALMMRPGIILSRSDLEDKIYG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E VE N V+  I  LRK    KLG + + + R +G+ +
Sbjct: 183 -WGEEVESNAVDFLIHALRK----KLGKEHIQNVRGVGWLV 218


>gi|170724028|ref|YP_001751716.1| DNA-binding response regulator CreB [Pseudomonas putida W619]
 gi|169762031|gb|ACA75347.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 226

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-N 123
           R +R  S+VP++ +S        +   + G DD V KP   RE+ ARV AI +R+     
Sbjct: 65  RQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAPRVE 124

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             AET   ++ +       + +   L R E R+L+ L+    +  ++ Q+  A+ G+  +
Sbjct: 125 PPAETALFQLDTLRMLISYRSQPLSLTRHEFRLLQCLLTQPQRVFSREQLLDAL-GVASD 183

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYS 219
              E  ++SHI  LR KLR      +P+ + R LGYS
Sbjct: 184 VGYERTIDSHIKSLRAKLRQVAAHAEPIQTHRGLGYS 220


>gi|254196433|ref|ZP_04902857.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|169653176|gb|EDS85869.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
          Length = 277

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 117 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 175

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 176 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 233

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 234 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 273


>gi|169350719|ref|ZP_02867657.1| hypothetical protein CLOSPI_01492 [Clostridium spiroforme DSM 1552]
 gi|169292582|gb|EDS74715.1| hypothetical protein CLOSPI_01492 [Clostridium spiroforme DSM 1552]
          Length = 223

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 3/155 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I ++   SL + ++  + G  D + KP    E+LAR+    R+     N  
Sbjct: 69  IREKSDIPVIVLTAKDSLNSKVEILEIGAYDYLCKPFELEELLARIHVQLRKSNKKTNNM 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV- 185
               + + +   D  +  ++  L R E  ILE L+ N  +   K +I++  Y   D+ + 
Sbjct: 129 TFKKLTLDNQIYDAIINNQLLQLTRHEYYILELLIQNPKRVFTKQEIYA--YAWNDDYLS 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +  HIS +RKK+  +   D + +   +G+ +
Sbjct: 187 DDKTINVHISNIRKKISKQTDEDYIKTVWGIGFKM 221


>gi|209547782|ref|YP_002279699.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533538|gb|ACI53473.1| two component transcriptional regulator PhoB, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 227

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +    +G DD V KP    E++ARV A+ R
Sbjct: 62  IELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  V +   + G I +  +      +     L   E R+LE+LM++ G+  +++Q+  
Sbjct: 122 RARPEVLSTVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|30262585|ref|NP_844962.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527887|ref|YP_019236.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185427|ref|YP_028679.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319898|ref|ZP_00392857.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165868884|ref|ZP_02213544.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632383|ref|ZP_02390710.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637929|ref|ZP_02396208.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685270|ref|ZP_02876494.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170704823|ref|ZP_02895289.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177649729|ref|ZP_02932731.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190565375|ref|ZP_03018295.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196040384|ref|ZP_03107685.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227814590|ref|YP_002814599.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229603419|ref|YP_002866905.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254685163|ref|ZP_05149023.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722571|ref|ZP_05184359.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737614|ref|ZP_05195317.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743205|ref|ZP_05200890.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751929|ref|ZP_05203966.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760449|ref|ZP_05212473.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30257217|gb|AAP26448.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47503035|gb|AAT31711.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179354|gb|AAT54730.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164715610|gb|EDR21127.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514478|gb|EDR89845.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532681|gb|EDR95317.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170130624|gb|EDS99485.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670630|gb|EDT21369.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172084803|gb|EDT69861.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190563402|gb|EDV17367.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196028869|gb|EDX67475.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227007754|gb|ACP17497.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229267827|gb|ACQ49464.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 235

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 65  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSYLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRIVSREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     DP+++ R +GY   I W+
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIKDPIETIRSVGYRLHITWD 230


>gi|325957425|ref|YP_004292837.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|325333990|gb|ADZ07898.1| response regulator [Lactobacillus acidophilus 30SC]
          Length = 233

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122
           R IR  S VP+I ++   S        D G+DD + KP    E+ AR+  I RRLK +  
Sbjct: 69  RRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKKTQE 128

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N A T     GP+++     +     E   L  +E  ++  LM +  K  ++ ++   +
Sbjct: 129 QNVAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELLDVV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSI 220
           +G +D   + N V+ +I    + +RNKLG +P    + + R LGY +
Sbjct: 189 WG-YDFVGQTNTVDVYI----RTIRNKLG-EPYKKLIKTVRGLGYCL 229


>gi|322389562|ref|ZP_08063112.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           parasanguinis ATCC 903]
 gi|321143756|gb|EFX39184.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           parasanguinis ATCC 903]
          Length = 219

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR+    P+I ++        +D   SG DD + KP    E+LARV A  RR  +  ++ 
Sbjct: 66  IRSKVDCPIIFLTAKAMETDIVDGLLSGGDDYITKPFGVGELLARVEAHLRREQREKHSS 125

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G IR         V+ E   L + E +I + L   +G+  ++ QI+  I+G FD   
Sbjct: 126 LNLGNIRFDLSSNQVFVKEEEIHLTKSEYQISKLLAKRKGQVFSREQIYEMIFG-FDGIG 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + + +  H+  +R K   K G +P+ +   +GY   WN
Sbjct: 185 DSSAISEHVKNIRAKFL-KFGENPISTVWGIGYK--WN 219


>gi|289450478|ref|YP_003474431.1| putative DNA-binding response regulator [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289185025|gb|ADC91450.1| putative DNA-binding response regulator [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 222

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 85/165 (51%), Gaps = 4/165 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +L+  R+    + +P+I ++   S    +   ++G DD + KP    E++ARV A+ 
Sbjct: 60  GDVILKKLRMDSHTAGLPVIMVTAKTSDLDLVKGMENGADDYIKKPFSVLELMARVKALL 119

Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR  K S    +   + V S  R+  + G++  L  +E  ++ +++AN+G  +++  +  
Sbjct: 120 RRTQKPSIVELQLDALTVNSAKREIAIAGKLVDLTYKEFELIYFMLANKGIVLSRDTLMD 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  +    ++ HI  LR+KL +  G   + + R +GY I
Sbjct: 180 KVWGT-DHELNSRTLDMHIKTLRQKLGSYGG--RICTVRNVGYVI 221


>gi|167766491|ref|ZP_02438544.1| hypothetical protein CLOSS21_00997 [Clostridium sp. SS2/1]
 gi|317499514|ref|ZP_07957778.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711900|gb|EDS22479.1| hypothetical protein CLOSS21_00997 [Clostridium sp. SS2/1]
 gi|316893168|gb|EFV15386.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 217

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ A+ ++  
Sbjct: 59  LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDALIKKNY 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++  
Sbjct: 119 GHLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKD 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 179 SEEIPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215


>gi|88855871|ref|ZP_01130533.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814738|gb|EAR24598.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 242

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-S 71
           DGY      +GV           + L ++A E+ SA    ++       E+ R +R   +
Sbjct: 41  DGYAVTLVTNGV-----------DALIATAHENFSAAAIDVMLPEMTGFEICRHLRKQGN 89

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSN 123
            +P++ ++   +++  +   DSG DD + KP    E  AR+ A+ RR        LK+  
Sbjct: 90  SLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDTAAGKATLKIGE 149

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              +   +R  S G +P       P+  +E  +L  L  + G+ + ++ I S ++G    
Sbjct: 150 LALDAATVRATSAG-NP------LPMSSKEFALLWMLATHPGEALTRSTILSEVWGTTAH 202

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ NVV+ ++S LR+KL        + + R +GY++
Sbjct: 203 -IDANVVDQYVSYLRRKLEPTQSGVTISTVRGVGYAL 238


>gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 234

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 39  QSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           Q SA  D+  ++  L G G   L++ R +R +    P++ +S   +    +   + G DD
Sbjct: 47  QGSASFDLVLLDLMLPGVGG--LDVCRHLRRSDPHTPILMVSARDTETDRVLGLELGADD 104

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVFPLPR 151
            + KP   RE++AR  A+ RR + +  R   G I       ++ D      +GE   L  
Sbjct: 105 YLVKPFGLRELVARCRALLRRSQQTIERFPVGQIIHHGDLSLYPDEFRVTREGERVNLSP 164

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPV 210
           +E R++E+ M N G+  ++ Q+   ++G  D  V+   V+ HI  LR+KL  N    + +
Sbjct: 165 KEYRLVEFFMQNPGRVWSRNQLIDQVWGT-DYVVDTKTVDVHIRWLREKLEVNPSAPEHI 223

Query: 211 DSKRFLGY 218
            + R  GY
Sbjct: 224 LTVRGFGY 231


>gi|330818213|ref|YP_004361918.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327370606|gb|AEA61962.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 225

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         DDG  L+  +S E  E    ++  DV  ++  L G   K +
Sbjct: 3   LLLVEDNEELAHWLAMTLTDDGFMLDRVSSGEAAEDALRASAYDVVLLDLNLPGMSGKTV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R+       P++ ++   ++   +    +G DD + KP   RE++AR+  + RR   
Sbjct: 63  -LRRMRERGDATPVLILTATGAVDEKVVCLGAGADDYIVKPFDARELVARIKVLARRQAP 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S +NR   G +    D     V      L  RE  +LE L+    K V+KT +  ++   
Sbjct: 122 SRSNRLRCGNLVYDMDRLQFAVDDVPLVLTPREHAVLEALILRAKKTVSKTTLAESVSA- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            D    E+ +E ++S+LRKKL        + + R LGY
Sbjct: 181 ADAPTSEDAIEIYVSRLRKKLEASSA--TIITLRGLGY 216


>gi|329114231|ref|ZP_08242993.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001]
 gi|326696307|gb|EGE47986.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001]
          Length = 243

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 21/186 (11%)

Query: 45  DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           DV  ++  L G  G  V+E  R  +   ++P++ +S   ++   +    +G DD + KP 
Sbjct: 65  DVMVVDRLLPGLDGLSVIETMR--QQGIRLPVLVLSALSAVDDRVTGLKAGGDDYLTKPF 122

Query: 104 HHREILARVAAIYRRL-KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERR 155
              E++AR+ A+ RR     + +   GPI       RV+ DGR+ E+      LP RE R
Sbjct: 123 AIEELVARIEALLRRPDDTRSTKLHLGPIDMDLIERRVWRDGREIEL------LP-REFR 175

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKR 214
           +LEYLM   G+ + ++ +   ++  +      N+V+ HI KLR+K+ +  G +P ++S R
Sbjct: 176 LLEYLMRRPGQVLTRSMLLEDVWQ-YRFIPRTNLVDVHIGKLRRKI-DGPGEEPLIESIR 233

Query: 215 FLGYSI 220
             G+ +
Sbjct: 234 GTGFRL 239


>gi|323359459|ref|YP_004225855.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275830|dbj|BAJ75975.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 218

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 12/209 (5%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRIIRAH-S 71
           IA F   G+   G+ ++  ++   +        ++  L+  G   +   E+ R +R   S
Sbjct: 13  IAAFVAKGLEAAGYQTVTVDDGADALDTALSGEVDLVLLDVGLPTIDGFEVLRTLRGQGS 72

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
            +P+I ++   S + T+D  D+G +D + KP    E+LARV +  R    +N  +   G 
Sbjct: 73  ALPVIMLTARTSTRDTVDGLDAGANDYMAKPFKFDELLARVRSRLREPVTANTISISHGD 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
           + +   GR   + G    L  RE  + E  + + G+ +++ Q+ S ++G+ FD     NV
Sbjct: 133 VTLDVRGRRASIDGREVDLSAREFALAEEFLRHAGQVLSREQLLSRVWGMDFDPG--SNV 190

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+ ++    + LR K G   + + R  GY
Sbjct: 191 VDVYV----RYLRGKFGAARIATVRGAGY 215


>gi|228999603|ref|ZP_04159180.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229007150|ref|ZP_04164773.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228754098|gb|EEM03520.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228760129|gb|EEM09098.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 229

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 10/166 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----RLK 120
           R IR  SQVP+I ++       TL  F+ G DD V KP     +LAR   +        K
Sbjct: 66  RRIRKTSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRILTSK 125

Query: 121 VSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +N  +T  I    V    R   ++G    L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 SPSNEDDTLSIHGICVHFPSRIVTIEGVDINLTHTEFEILTYFMQNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G ++ A ++  V SHI  LR KL +K  +  + +   +GY  + N
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGDKAKY--ITTVVRMGYKFEGN 228


>gi|226313781|ref|YP_002773675.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226096729|dbj|BAH45171.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 2/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R H   PL+ ++        +  F+ G DD + KP   +E++ RV A+ +R ++
Sbjct: 62  ELCRKLREHYDFPLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALLKRYRI 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++++ + G + +           + + +P +E  +L  L +  G+ +++ Q+   I+G 
Sbjct: 122 AASHQVQAGKLILDRKTFAVASGTKTWTIPLKEFEMLFKLASYPGQTISREQLIEQIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D    E  V+ HI++LR++    +    + + R LGY ++
Sbjct: 181 YDFEGNERTVDVHINRLRERFPEAMYGFLIRTVRGLGYRLE 221


>gi|217970353|ref|YP_002355587.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507680|gb|ACK54691.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 219

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A + VP++ ++   +    +   D+G DD + KP    E+ AR+ A+ RR   S
Sbjct: 63  LQRLRAAANPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVDELKARIRALLRR---S 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            NRA+     G + +    +    +G+   L R+E  +L  L+   G+ + + ++  A+Y
Sbjct: 120 ANRAQPVLHHGEVVLDPVNQQVSYRGQPVVLQRKEFLLLHELLTQPGRVLTRDRLQQALY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  +EA E N +E HI  LR+KL  +L    + + R +GY  D
Sbjct: 180 GWGEEA-ESNTLEVHIHHLRRKLFPEL----IRTVRGVGYLAD 217


>gi|109453320|gb|ABG34140.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453322|gb|ABG34141.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453326|gb|ABG34143.1| PhoP [Salmonella enterica subsp. diarizonae]
          Length = 213

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 2/141 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   +++      P 
Sbjct: 73  LPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 133 QVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191

Query: 192 SHISKLRKKLRNKLGFDPVDS 212
             + +LRKK++ +   D + +
Sbjct: 192 VLMGRLRKKIQAQYPHDVITT 212


>gi|114797880|ref|YP_760030.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114738054|gb|ABI76179.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 235

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 16/161 (9%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A    P + +S    +Q  +    +G +D + KP    E+ ARV A+ RR       AE 
Sbjct: 78  AGGTTPALFLSALGDVQNKVQGLRAGAEDYLGKPFAPAELAARVEALGRR----QTNAEP 133

Query: 129 GPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            P+ V   G        R     G+   L  RE R+LEYLM + G+ V +T +   ++  
Sbjct: 134 -PVTVLKAGDLEMNLLTRKVTRAGKKIDLQPREFRLLEYLMRHAGQVVTRTMLLEKVWDY 192

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   + NV++ HIS+LR K+  +     + + R  GY +
Sbjct: 193 NFDP--QTNVIDVHISRLRAKIDKEFAEPLLQTVRGAGYRL 231


>gi|154247105|ref|YP_001418063.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161190|gb|ABS68406.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 223

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  RA    P++ ++        +  FD+G DD V KP H  E+LAR+ A+ 
Sbjct: 59  GISVLESWR--RAGKVTPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALL 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    +++    GP+R+ +      V+G    L   E R+L YLM + G+ V++ ++  
Sbjct: 117 RRASGHASSEMTCGPVRLDTRSGRVTVEGTAVKLTSHEYRLLSYLMHHAGRVVSRGELVE 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   FD   + N +E  + +LRK    KL  D + + R LGY
Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRLRK----KLDCDVIQTVRGLGY 214


>gi|332653383|ref|ZP_08419128.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332518529|gb|EGJ48132.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 230

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           +R H  +P+I +S    ++  +     G DD + KP  ++E+LARV A  RR+K      
Sbjct: 69  VRQHGTMPIIVLSAKAGVEDRVKVLRLGADDFIPKPFDNQEVLARVEAQLRRVKKFSAPP 128

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +  +      +G    L  RE  IL  LM    +   + QI+  ++G 
Sbjct: 129 EKKQRFVCGDLCLDREEFTVTAEGNPVTLTAREFEILALLMEYPKRVFTREQIYQHVWGE 188

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D   ++N V  HIS LR KL
Sbjct: 189 -DYFGDDNTVNVHISNLRSKL 208


>gi|293374869|ref|ZP_06621171.1| transcriptional regulatory protein, C-terminal domain protein
           [Turicibacter sanguinis PC909]
 gi|292646538|gb|EFF64546.1| transcriptional regulatory protein, C-terminal domain protein
           [Turicibacter sanguinis PC909]
          Length = 165

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P+I ++   S    +D    G DD + KP    E+LAR+ A+ RR    +       I
Sbjct: 19  NIPVIFLTAKTSTMDKVDGLRLGADDYMVKPFEAIELLARIEAVLRRYGKVHKLLTYKNI 78

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V  + R+ E+ G V  L  +E  +   L+ N+   +++ Q+   ++G+ D   E   V+
Sbjct: 79  TVNDEKREVELNGNVVYLTVKEYDLFLTLLKNKNIALSREQLIEKVWGI-DYYGETRTVD 137

Query: 192 SHISKLRKKL 201
            HI+ LRKKL
Sbjct: 138 MHINALRKKL 147


>gi|66046101|ref|YP_235942.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63256808|gb|AAY37904.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 227

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ + +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 63  GRDGMDICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   S      G ++V          G    L   E R+L     + G+  ++  +   
Sbjct: 123 RRSSSSEPHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SHI  LR+KL     G DP+ S   +GY ++ 
Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227


>gi|84495357|ref|ZP_00994476.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384850|gb|EAQ00730.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 244

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 20/205 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRA-HSQVPLIGI 78
           +L +E W   +A   + A++A    + + V           +E+ R +RA +  VP++ +
Sbjct: 37  ALRYEGWEVRAAATGLKAVKAAREFQPDAVVLDMMLPDFDGMEVLRRMRADNDAVPVLFL 96

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVF 134
           +   +++  +    +G DD V KP    E++AR+ A+ RR  V    S++    G + + 
Sbjct: 97  TAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALMRRTTVVADESSSIIAVGDLTMD 156

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +    G    L   E  +L YLM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 157 EDSHEVTRGGVEIHLTATEFELLRYLMRNPKRVLSKAQILDRVWN-YDFGGQANVVELYI 215

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGY 218
           S LRKK+    G  P + + R +GY
Sbjct: 216 SYLRKKI--DAGRTPMIHTMRGVGY 238


>gi|313895549|ref|ZP_07829105.1| putative transcriptional activator protein Irlr [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975675|gb|EFR41134.1| putative transcriptional activator protein Irlr [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 225

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDP 140
           S++  +   D+G DD + KP    E+LAR+ A+ RR   K+ +   E G  R+       
Sbjct: 83  SVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRSTQKIQHEVDEIGGFRLNRTANIL 142

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           E  G++  L  RE ++ + L  N G  V +  I   I+GL +  V  N ++S++  LRKK
Sbjct: 143 EKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRIWGL-ESDVSSNNIDSYMKMLRKK 201

Query: 201 LRNKLGFDPVDSKRFLGYSID 221
           L      + + + R +GY ++
Sbjct: 202 LDAASEGEAIKTIRGVGYKLE 222


>gi|326790336|ref|YP_004308157.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541100|gb|ADZ82959.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 225

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 5/162 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           L  +     Q+ +I ++    L   L  F  G +D + KP    E+ AR+  I +RL   
Sbjct: 63  LAEVQNKKRQLGVIILTAKEDLGDKLRAFQLGAEDYLTKPFFMEELKARMYVILKRLGKM 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N      + +    +   ++ E   L  R   +LEYLM N+   + K QIF  I G 
Sbjct: 123 TEENTLVFKDLHLDLKQKSVWIKDEKIELNERLFHLLEYLMLNKDILLFKEQIFERICG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +D      ++E ++S LRKKL +  G+D  V +KR +GY ++
Sbjct: 182 YDSDASTEIIEVYMSHLRKKL-SPFGYDVYVVTKRGMGYMLE 222


>gi|238027804|ref|YP_002912035.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
 gi|237876998|gb|ACR29331.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 221

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 87/161 (54%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R+  A S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR    
Sbjct: 63  LRRLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGL 180
           +++    G + +    R  E+ G+  PL R+E  +LE ++A+R +RV +K ++ + ++  
Sbjct: 123 ASDVLRFGSLSIDRSSRLAELDGQPLPLSRQEFALLE-ILASRPQRVFSKDELLNQLFS- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           F      N VE +++++R+KL+   G D  + + R +GY I
Sbjct: 181 FGREPSANAVEQYVTRVRRKLQ---GSDVEIRTARGMGYQI 218


>gi|237736365|ref|ZP_04566846.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
 gi|229421407|gb|EEO36454.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
          Length = 219

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 84/161 (52%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP+I ++        L  FD   D+ + KP + + ++A+V A+ RR    
Sbjct: 63  VCRKIREESQVPIIMLTARADESDQLFGFDLETDEYMVKPFNPKLLVAKVKALLRRDGKI 122

Query: 123 NNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++A    G + +    R+  ++  V  L  +E  +L + + N+G  +++ +I ++++G 
Sbjct: 123 IDKAPMVFGDLAIDGIKREVRLKDVVLDLTPKEYDLLYFFVENKGIALSREKILNSVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +   V++HI +LRKK+ +K     V + R  GY  +
Sbjct: 182 WDYFGDSRTVDTHIKRLRKKIGDKY----VQTVRGFGYKFE 218


>gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 229

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 108/224 (48%), Gaps = 12/224 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       +G+ ++   + + EE L+ +  ++   I   ++      LE
Sbjct: 6   LVVDDEKLIVKGIRFSLEQEGMEVD--CAYDGEEALEKAKEKEYDMILLDIMLPKLTGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR++  
Sbjct: 64  VCQQIREFSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRMRKE 123

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +        +G +++  +GR   + G+   L  +E  +LE L  N  K  ++  + + 
Sbjct: 124 EAKESFGKTLVSGDLKLDCEGRRVFIAGKEINLTAKEFDVLELLAKNPNKVYSRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
           ++G ++   +   V+ HI +LR+K+   +  DP  V +K  +GY
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKI-EAVPSDPKYVHTKWGIGY 225


>gi|90426403|ref|YP_534773.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108417|gb|ABD90454.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 221

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 8/188 (4%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDS 93
           E W +    ED +AI   L   G   L + +  R + +  P++ ++   S    +D  D+
Sbjct: 35  EAWFRGDT-EDYAAIVLDLGLPGMDGLAVLKRWRGNDRRTPVLILTARGSWAERVDGIDA 93

Query: 94  GVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD + KP    E+LAR+ +I RR    + +    G + +       +V G    L   
Sbjct: 94  GADDYLPKPFRMEELLARLRSIVRRSAGQACSVISVGDVTLDERQMKVDVGGVPVNLSPL 153

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E R++ +L  +RG+ V++ ++   IYG  ++A + N +E  I ++RKKL ++L    +++
Sbjct: 154 EYRLIAFLFLHRGRVVSQAELSENIYG-NEDAHDSNAIEVLIGRVRKKLGSEL----IET 208

Query: 213 KRFLGYSI 220
           +R  GY +
Sbjct: 209 RRGFGYLV 216


>gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
 gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
          Length = 228

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR   + P+I ++        +   + G DD + KP   +E+LAR+ A+ RR  
Sbjct: 65  IDVLKWIRKEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRRYS 124

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V N   E      + +  +      + +   +P +E  +L YL +N+ +   + Q+   +
Sbjct: 125 VDNENKEVLKFNQLTIDINSYTVVYKDDEIKMPPKEFELLHYLASNKNRVFTREQLLCEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G +D   +   V+ H+ +LR+KL+
Sbjct: 185 WG-YDYPGDSRTVDVHVKRLREKLQ 208


>gi|282915997|ref|ZP_06323760.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus D139]
 gi|283769821|ref|ZP_06342713.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|282319945|gb|EFB50292.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus D139]
 gi|283459968|gb|EFC07058.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|283469954|emb|CAQ49165.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 224

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 9/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+     
Sbjct: 64  RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  T    V    +D   +GE    L + E  ILE L+  + + V++  I +A++  
Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGEQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
            DEA V +N +  ++++LRKKL +++G D  +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKL-SEIGMDSAIETKVGKGY 220


>gi|238918413|ref|YP_002931927.1| DNA-binding transcriptional regulator BasR [Edwardsiella ictaluri
           93-146]
 gi|238867981|gb|ACR67692.1| transcriptional regulatory protein BasR/pmrA [Edwardsiella ictaluri
           93-146]
          Length = 220

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132
           P++ ++   ++   +D  D+G DD + KP    E+LARV A+ RR++ + NN  +   I 
Sbjct: 74  PVLILTARDTVSDRVDGLDAGADDYLVKPFALAELLARVRALIRRMQGLCNNFLQVDDIH 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    +     G+   +  +E  IL  LM   G+ + +  +   +Y  + + +  N +E 
Sbjct: 134 LDLSSQQVTCGGQALEITPKEFAILARLMMRAGQTINREVLQQDLYS-WQDGLSSNSLEV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           HI  LR+    KLG   + + R +GY ++
Sbjct: 193 HIHNLRR----KLGKKRIKTLRGVGYRLE 217


>gi|225862629|ref|YP_002748007.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225787490|gb|ACO27707.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 225

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYDGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR+KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLREKLR-KVNF-PIDHHLKTVYGVGYRW 220


>gi|172060288|ref|YP_001807940.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171992805|gb|ACB63724.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 226

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 7/143 (4%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRA 126
           A S+VP++ +S    +   +    +G DD V KP    E++AR+ A+ RR + +  + + 
Sbjct: 70  AGSKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRSQDNGFDTKL 129

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           + G + +    R     G    L  RE ++LEYLM +  + V +T +   I+   FD   
Sbjct: 130 KVGDLCIDLLSRKVARAGNAILLKPREFKLLEYLMRHAEQVVTRTMLLENIWEYHFDP-- 187

Query: 186 EENVVESHISKLRKKLRNKLGFD 208
           + NV++ H+SKLR+K+    GFD
Sbjct: 188 QTNVIDVHVSKLRQKIDT--GFD 208


>gi|226943977|ref|YP_002799050.1| Response regulator, two-component [Azotobacter vinelandii DJ]
 gi|226718904|gb|ACO78075.1| Response regulator, two-component [Azotobacter vinelandii DJ]
          Length = 219

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A + +P++ ++   +    +   D+G DD + KP    E+ AR+ A+ RR   S
Sbjct: 63  LRRLRAAGNPLPVLVLTARDATSERIAGLDAGADDYLVKPFDVAELKARLRALLRR---S 119

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            NR +       I++    +    QG    L R+E  +L  L+A  G+ + + ++  A+Y
Sbjct: 120 FNRPQPALEYRGIQLDPQSQAVSYQGRDITLARKEFLLLHELLAQPGRVLTRDRLQQALY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G + E VE N +E H+  LR+K   +L    + + R +GY +D
Sbjct: 180 G-WSEEVESNALEVHVHHLRRKFFPEL----IRTVRGVGYMVD 217


>gi|241203510|ref|YP_002974606.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857400|gb|ACS55067.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 229

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFP 148
            ++G DD + KP    E++ARV A+ RR  V   R   +   + +    R+    G+V  
Sbjct: 95  LEAGGDDYLVKPFAFSELMARVNALGRRPPVQEQRTVLKVADLELDLIRREARRAGQVIE 154

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207
           L  RE  +LE LM   G+ + KT +   ++   FD   + +VVE+HIS+LR K+      
Sbjct: 155 LQPREFTLLEVLMRGEGRVITKTMLLERVWDFHFDP--KTSVVETHISRLRAKVDKPFQV 212

Query: 208 DPVDSKRFLGYSI 220
             + + R  GYS+
Sbjct: 213 QLLHTVRNTGYSL 225


>gi|256833297|ref|YP_003162024.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686828|gb|ACV09721.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 237

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 15/171 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R+   VP+I ++        +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCRELRSRGDVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARMRAVLRRHTS 121

Query: 122 SNNRAET-------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           ++    T             GP+ +  +     V+G+    P +E  +LEYL+ N G+ +
Sbjct: 122 ASASESTDFRDDDDDQVLHAGPVAMDVERHVVTVRGDSVAFPLKEFDLLEYLLRNAGRVL 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            + Q+   ++G  D   +   ++ HI ++R K+    G    + + R LGY
Sbjct: 182 TRGQLIDRVWG-SDYVGDTKTLDVHIKRIRAKIEEDPGSPQLILTVRGLGY 231


>gi|291087543|ref|ZP_06571994.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291074707|gb|EFE12071.1| regulatory protein VanR [Clostridium sp. M62/1]
          Length = 273

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 14/210 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DDR +V+   I L G+    ++ ++ LE  E L++    +V+ +   ++  G   
Sbjct: 46  ILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKT---HEVNLMIVDVMMPGLDG 102

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +     +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 103 IRTTLKVRETSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 162

Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              N       RV+  G        ++  V GE+  L   E  IL  L+ N GK  +  Q
Sbjct: 163 QLGNMHTQSDSRVYKCGGLQINDENKEVLVDGELIKLTPIEYNILLLLVKNAGKVFSIDQ 222

Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKL 201
           I+  I+   +EA+  +N V  HI  +R+K+
Sbjct: 223 IYEEIWN--EEAIGADNTVAVHIRHIREKI 250


>gi|255654686|ref|ZP_05400095.1| two component transcriptional regulator [Clostridium difficile
           QCD-23m63]
          Length = 228

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124
           R    +P++ I+   +L   ++  D G DD + KP H +E+LARV A+ RR   +++S +
Sbjct: 70  RKGISIPILIITAMSTLDNRVEGLDGGADDYLVKPFHIKELLARVRALTRRPANIQLS-S 128

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           + E G +    D R          L  +E  +    M N     ++ Q+   I+G   E 
Sbjct: 129 KLEYGDLTFDKDSRTLSTPNNSLLLTSKETELTFVFMQNPETLFSREQLILKIWGSSSE- 187

Query: 185 VEENVVESHISKLRKKLR 202
           VE   V+S+IS LRK+L+
Sbjct: 188 VETGNVDSYISFLRKRLK 205


>gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 248

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 13/172 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R  RA ++  P+I  S   S    +   + G DD + KP    E++AR
Sbjct: 56  LMLPGVDGLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVAR 115

Query: 112 VAAIYRRLK--VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164
           V A+ RR+     ++R E G +R+     DP        G+   L  RE  +L Y   + 
Sbjct: 116 VKALLRRVDALAKDSRIEAGNLRIAGLSIDPLTREAAANGKPIELTPREFDLLYYFAQHP 175

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           GK  ++  + +A++G   E   E+ V +HI++LR K+      DP   +R L
Sbjct: 176 GKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAQPERIL 222


>gi|21222423|ref|NP_628202.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|13122184|emb|CAC32360.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 271

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 20/207 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +   A++              ++   + +  L R+ R    VP++ +
Sbjct: 63  ALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLSVLGRLRRDLPDVPVLFL 122

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134
           +   +++  +    +G DD V KP    E++AR+  + RR   ++ R+++    G + + 
Sbjct: 123 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSDSVLVVGDLTLD 182

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +    G+   L   E  +L +LM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 183 EDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 241

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           S LR+K+    G +P + ++R  GY I
Sbjct: 242 SYLRRKI--DAGREPMIHTRRGAGYLI 266


>gi|327394208|dbj|BAK11630.1| transcriptional regulatory protein BasR/PmrA BasR [Pantoea ananatis
           AJ13355]
          Length = 228

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+ R     P++ ++   +++  +   D+G DD + KP    E+LAR+ A+ RR +  
Sbjct: 63  LQRLRRQKQMQPVLILTARDTIEERIAGLDAGADDYLIKPFALDELLARIRALIRRHVNQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++R E G + +    R   +   +  L  +E  IL  LM   G  V +  ++  IY  F
Sbjct: 123 GDSRLEVGNLSLDMTHRQIHLDDVLLDLTPKEFSILSRLMLKAGHPVHRELLYQDIYN-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     N +E HI      LR+K+G   + + R  GY++
Sbjct: 182 DNEPSTNTLEVHI----HNLRDKVGKATIRTVRGFGYAL 216


>gi|325921831|ref|ZP_08183648.1| two component transcriptional regulator, winged helix family
           [Xanthomonas gardneri ATCC 19865]
 gi|325547708|gb|EGD18745.1| two component transcriptional regulator, winged helix family
           [Xanthomonas gardneri ATCC 19865]
          Length = 221

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%)

Query: 57  GEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           GE  L + R +R  +   P+I ++    L   +   D+G DD + KP    E++AR+ AI
Sbjct: 56  GESGLTVIRFMRGQYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAI 115

Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            RR   S  R       G + V    R     G+   L   E R+L  LM   G+ V K 
Sbjct: 116 TRR---SQGRVVPLLTQGDVCVDPSSRKVTRDGKWVALSAHEYRLLLALMERAGRVVTKD 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           Q+   +YG   E    N++  ++ +LR+KL ++L
Sbjct: 173 QLEEGVYGGPSEG-GSNMIAVYVHQLRRKLGDEL 205


>gi|323340344|ref|ZP_08080603.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323092233|gb|EFZ34846.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 323

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR+ SQVP+I IS     Q  +     G DD + KP     + A+V A+ RR+     ++
Sbjct: 166 IRSFSQVPIIFISAADFDQNAVRALMIGADDYLVKPFAMDLLTAKVQAVLRRVNAVQEKS 225

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E     +     D + QGE   L   E  I++ LM N  + V+K ++ SA++   +  +
Sbjct: 226 LEKFGCELNLLTNDLDFQGESVRLTPTEGLIMKLLMLNANQTVSKKKLISALWQ-GNNFI 284

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +EN +  ++S+LR KL    G   + + R  GY ++
Sbjct: 285 DENALNVNLSRLRGKLSTLEGPLQITTVRGQGYRLE 320


>gi|317402962|gb|EFV83502.1| winged helix family Two component transcriptional regulator
           [Achromobacter xylosoxidans C54]
          Length = 219

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R +RA   + P++  +   ++   +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LTLLRELRARKDRTPVLIATARDAVSDRIAGLDAGADDYIVKPYDVDELLARMRALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S  RAE       I +        V G   PL  RE  +LE L+A  G   ++ Q+  
Sbjct: 119 --SAGRAEPVFEHDGITIDPQSHAATVDGTPVPLTAREWAVLEPLIARPGMIFSRAQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  + ++V  N VE +I  LRKKL   L    + + R +GY I
Sbjct: 177 KLYS-WKDSVSSNAVEVYIHGLRKKLGQNL----IQNVRGVGYVI 216


>gi|306819750|ref|ZP_07453409.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552215|gb|EFM40147.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 240

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 2/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I      V +I ++    ++  +   D G +D + KP H  E+ AR+ ++ RR +V 
Sbjct: 80  LQKIREEDKLVNVIMLTARTQIKDRVKGLDLGANDYLIKPFHFDELEARIRSLLRRKQVQ 139

Query: 123 NNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +    +F +  +   V  E   L  +E  ILEYL+ N+G+ V + ++   ++   
Sbjct: 140 EDSTISAFGLIFDTKTKTASVNDERVKLTVKETGILEYLLLNQGRYVLQEELLEHVWE-S 198

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D     N V  H+  LR KL++ LG + + ++   GY ID
Sbjct: 199 DMNEFSNTVRVHVYGLRNKLKDALGKNIIRNEIGKGYIID 238


>gi|317127238|ref|YP_004093520.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472186|gb|ADU28789.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 224

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 15/167 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL ++++  S  P+I ++ Y      +   D G DD + KP   RE+L+R+ ++ RR   
Sbjct: 63  ELCKLVKQKSDTPVIFLTAYDDEVNVVMGLDMGADDYITKPFRIRELLSRIKSVLRRYNK 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +K+ N +  T   +V+ +       GE   +   E R+L     + G+ + + Q+ 
Sbjct: 123 QTTIIKLHNIQINTLEGKVYKN-------GEEIIITALEYRLLLIFANHVGQVLTREQLL 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ +  + V +N +  +I +LR+KL  N      + + R LGY +
Sbjct: 176 ERIWDVAGDYVNDNTLTVYIKRLREKLEDNPQKPTLIKTVRGLGYKV 222


>gi|282896786|ref|ZP_06304792.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Raphidiopsis brookii D9]
 gi|281198195|gb|EFA73085.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Raphidiopsis brookii D9]
          Length = 236

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SN 123
           R    +P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  V    + 
Sbjct: 68  RQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSSVDSYTTT 127

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            +   G + +  + +    QG +  L  +E ++L+YLM N  + +   QI   ++   ++
Sbjct: 128 GKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYLMENPEQLLTHGQIMQHLWK-GEK 186

Query: 184 AVEENVVESHISKLRKKL 201
             E NV+ + I  LR+K+
Sbjct: 187 PPESNVIAALIRLLRRKI 204


>gi|229083888|ref|ZP_04216195.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228699409|gb|EEL52087.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 230

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 73/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR+ S VP+I ++        +     G DD + KP H  E+LAR+ A+ RR   
Sbjct: 62  ETCRKIRSFSNVPIIMVTARDQTIDVVQGLKIGADDYITKPFHEDELLARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           SN         +  D       V G+   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 SNQHELIQYKGILWDEAKHFISVHGQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L D   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 179 L-DATTEDRTVDSHIRNLRDKLR-KAKF-PIDEHLKTVYGVGYRW 220


>gi|160938781|ref|ZP_02086133.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438480|gb|EDP16239.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC
           BAA-613]
          Length = 224

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 3/130 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149
           F  G DD + KP+   E++ R+ A+ RR ++ N R  T   + +  D        E   L
Sbjct: 92  FIVGTDDYMTKPVDEEEMILRIRALLRRAQIVNERRITIADVCLDYDSLTVSRGDESQTL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           PR+E  +L  L++  GK   + Q+   I+G+  ++ ++N +  HI++LRK+  +   F  
Sbjct: 152 PRKEFYLLYKLLSYPGKIFTRIQLMDEIWGMESQS-DDNTINVHINRLRKRFEDYPEF-T 209

Query: 210 VDSKRFLGYS 219
           +++ R LGY 
Sbjct: 210 IETIRGLGYK 219


>gi|170738500|ref|YP_001767155.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168192774|gb|ACA14721.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 220

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 17/225 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D  ++ DG  A     G +++   +    +   ++++     ++  L  G G  V
Sbjct: 3   ILVVEDDPILSDGLRAGLALSGAAVDCVATCADADAALTASQFGAVILDLMLPDGSGLDV 62

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +R    + P++ ++   ++   +   D G DD + KP    E+ AR+ A+ RR 
Sbjct: 63  L---RGLRGRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRR- 118

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++ RA    E G IR+        V G    + RRE  +L  LM       +K ++  
Sbjct: 119 --ASGRAAAGLEHGGIRLDPGSLTVTVDGAPVTVSRREFMVLAALMERPSVLRSKAELEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E VE N VE H+      LR K+G   +++ R LGY +
Sbjct: 177 RLYG-WQEEVESNAVEVHV----HNLRTKIGKHAIETVRGLGYRM 216


>gi|148380092|ref|YP_001254633.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153933101|ref|YP_001384389.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935511|ref|YP_001387926.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289576|emb|CAL83677.1| two-component system response regulator [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929145|gb|ABS34645.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931425|gb|ABS36924.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 223

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 8/157 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122
           +R  S VP+I ++   S    L   + G DD + KP +   +LAR+  I +R    LK +
Sbjct: 67  MRKTSDVPIIIVTSRDSEVDELISINLGADDFITKPYNTEILLARITNILKRAYGNLK-T 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN        +         + +   L + E +IL YL+ NRG  V +  +   ++   D
Sbjct: 126 NNTLNYKDFNLNLSNATVIYKDKSLELTKNEVKILSYLINNRGNIVKRDSLMEYLWK-SD 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
             V+++ +  +I++LRKKL+ ++G  +P++++R LGY
Sbjct: 185 YFVDDSTLTVNINRLRKKLQ-EIGIENPIETRRGLGY 220


>gi|330950384|gb|EGH50644.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 227

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ + +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 63  GRDGMDICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   S      G ++V          G    L   E R+L     + G+  ++  +   
Sbjct: 123 RRSSSSEPHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SHI  LR+KL     G DP+ S   +GY ++ 
Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227


>gi|256545776|ref|ZP_05473132.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
 gi|256398472|gb|EEU12093.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
          Length = 222

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S +P+I ++        ++  + G DD ++KP   + +  ++ A+ RR       N
Sbjct: 66  IREISNLPIIFLTSAADDINLINAINYGADDFISKPFSMQVLNMKIKALLRRTYDFSGKN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  I +  D    ++  +   L + E  ILE LM N  K V++  I   ++   D 
Sbjct: 126 LDLSYKNISLIKDKMILKINDKEINLSKNEFLILEILMENSQKIVSRELIMDKLWAT-DS 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +++N +  +I++LRKKL+N LG D  + +K+ +GY I
Sbjct: 185 FIDDNTLTVNINRLRKKLKN-LGLDDFIQTKKGVGYFI 221


>gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
          Length = 234

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 22/183 (12%)

Query: 61  LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L LP+I        +R  S VP+I ++        +   + G DD + KP +  E+ AR+
Sbjct: 54  LMLPKIDGIAVCQQVREFSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARM 113

Query: 113 AAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
            AI+RR   S +             +G +++  D R  ++ G    L  +E  ++E L +
Sbjct: 114 KAIFRRSGGSESEGRQSEAARKVISSGSLKLDCDARTLQISGREIYLTAKEFDLMELLAS 173

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           N GK  ++  + + ++G +D   +   V+ H+ +LR+K+      DP  + +K  +GY  
Sbjct: 174 NPGKVYSRESLLNTVWG-YDYPGDVRTVDVHVRRLREKVEPN-ASDPKYIQTKWGVGYYF 231

Query: 221 DWN 223
             N
Sbjct: 232 GQN 234


>gi|167738475|ref|ZP_02411249.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
          Length = 237

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           + +S +P++ +++       +   ++G DD V KP   +E +ARV A+YRR   +   +E
Sbjct: 68  KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 127

Query: 128 ---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               GP R+ +  +      E   L  +E  I+E L  N G+ V++ ++   ++G   + 
Sbjct: 128 LIEIGPYRIQTSEKVVYFHHEAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 187

Query: 185 VEENVVESHISKLRKKL 201
                +++HI ++R+KL
Sbjct: 188 AAFRTLDTHIYRIRRKL 204


>gi|126736572|ref|ZP_01752312.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126713885|gb|EBA10756.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 220

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 8/135 (5%)

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF 147
           +D  D+G DD + KP H  E+ ARV A+ RR K            V  D R  +V  +  
Sbjct: 88  VDGLDAGADDYLTKPFHMAELSARVRALIRR-KAGKATPVFSKDDVTFDTRTNQVMVDGV 146

Query: 148 P--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           P  L  +E  +L YL  N G+ V++T++   IY   D   + N +   +++LRK    KL
Sbjct: 147 PMNLTSQEIAVLSYLFHNSGRLVSRTELSDHIYQ-HDGDRDSNTIAVFVNRLRK----KL 201

Query: 206 GFDPVDSKRFLGYSI 220
           G D +++ R  GY I
Sbjct: 202 GSDLIETVRGRGYVI 216


>gi|148557410|ref|YP_001264992.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502600|gb|ABQ70854.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 225

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 10/166 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ + IRA     P++ +S    +   +    +G DD + KP    E++ARV A+ RR 
Sbjct: 60  LKILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRG 119

Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  E  +G + +   GR     G    L +RE RILEYL+ + G+ V ++ +   +
Sbjct: 120 PAIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           +   FD   + N+++ H+S+LR+KL    GFD   +++ R  GY +
Sbjct: 180 WDYNFDP--QTNIIDQHVSRLRQKLDR--GFDTPLIETVRGTGYVV 221


>gi|306818188|ref|ZP_07451919.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|304649152|gb|EFM46446.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 229

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 10/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
           M   ++D   ++D  +   G  G    G    +      +  R ++  ++  L G  G +
Sbjct: 1   MIYFVEDDRNIRDLVVYTLGSTGFEALGCEDDKAFRAEMAKTRPELVLLDIMLPGTDGIQ 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   +  R+ + +P+I ++   +    +   D G DD V KP    E+++RV A+ RR 
Sbjct: 61  ILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLRRS 120

Query: 120 KVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             S   +        G I +        V GE   L  +E ++LE LM   G   ++ Q+
Sbjct: 121 SRSAQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRDQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +I+G +    E   V+ HI  LRKKL     +  + + R +GY +
Sbjct: 181 LDSIWG-YSFHGETRTVDVHIRTLRKKLGEAAKY--IKTVRGVGYKV 224


>gi|289770395|ref|ZP_06529773.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289700594|gb|EFD68023.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 285

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 20/207 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +   A++              ++   + +  L R+ R    VP++ +
Sbjct: 77  ALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLSVLGRLRRDLPDVPVLFL 136

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134
           +   +++  +    +G DD V KP    E++AR+  + RR   ++ R+++    G + + 
Sbjct: 137 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSDSVLVVGDLTLD 196

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +    G+   L   E  +L +LM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 197 EDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 255

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           S LR+K+    G +P + ++R  GY I
Sbjct: 256 SYLRRKI--DAGREPMIHTRRGAGYLI 280


>gi|238752095|ref|ZP_04613578.1| KDP operon transcriptional regulatory protein kdpE [Yersinia rohdei
           ATCC 43380]
 gi|238709672|gb|EEQ01907.1| KDP operon transcriptional regulatory protein kdpE [Yersinia rohdei
           ATCC 43380]
          Length = 198

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I +S   S +  +   D+G DD ++KP    E+LARV    RR    +  +
Sbjct: 40  VRQWSAIPIIVLSARSSEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGGS 96

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  P+  F+D       R     GE   L   E R+L  L+AN GK + + Q+ + ++G 
Sbjct: 97  QESPVVNFADISVDLINRQITRGGEKLHLTPIEFRLLTALLANSGKVITQRQLLNQVWG- 155

Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216
                  N VE H   LR     LR KL  DP   K  L
Sbjct: 156 ------PNYVE-HSHYLRIYMGHLRQKLEADPTRPKHLL 187


>gi|225569040|ref|ZP_03778065.1| hypothetical protein CLOHYLEM_05119 [Clostridium hylemonae DSM
           15053]
 gi|225161839|gb|EEG74458.1| hypothetical protein CLOHYLEM_05119 [Clostridium hylemonae DSM
           15053]
          Length = 230

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 14/163 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  S++P+I +S     +  ++  D+G DD V KP +  E++ARV    R+L 
Sbjct: 64  MEVIRNVREVSEIPIIVVSARQEEKEKIEALDAGADDYVTKPFYMGELMARVRVGMRKL- 122

Query: 121 VSNNRA-ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N RA ET  + V  +       R   V GE   L   E +IL  L+AN+GK +    I
Sbjct: 123 -GNIRAGETDTVFVKEELLVDYGKRKVTVGGEEVHLTPIEYKILLLLIANQGKVLTHNYI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
              I+G   E ++   +   ++ LR+K+      DP D +  L
Sbjct: 182 IREIWGYSGE-IDAGNLRVFMATLRRKIEK----DPADPRFIL 219


>gi|224539099|ref|ZP_03679638.1| hypothetical protein BACCELL_04000 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519289|gb|EEF88394.1| hypothetical protein BACCELL_04000 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 226

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 5/173 (2%)

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   L++ R I++ S Q  +I +S   SL   +     G DD + KP H  E+  R
Sbjct: 52  LMLPGGNGLDVLRKIKSTSPQTGVIIVSAKDSLDDKVAGLKIGADDYLAKPFHLPELSMR 111

Query: 112 VAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ RR   +N N  + GPI +   G+   V      L + E  +L +L+ NR + V+K
Sbjct: 112 IFALLRRKCFTNSNTLQNGPISIDLLGKVVSVGTVTLDLTKTEYELLLFLIENRRRVVSK 171

Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + G + D   + N V +HI  L+ K+ +    D +  K + G    W
Sbjct: 172 SALAEHLSGDMADMMNDFNFVYAHIKNLKAKMADVGMADCI--KTYYGTGYKW 222


>gi|217973027|ref|YP_002357778.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304409091|ref|ZP_07390712.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307303094|ref|ZP_07582849.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|217498162|gb|ACK46355.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304352912|gb|EFM17309.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306913454|gb|EFN43876.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315267915|gb|ADT94768.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 224

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 3/154 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR          
Sbjct: 69  AGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVIC 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           +G +++    +   +  E+  +   E  ILEYLM +  + VAK ++   IYG  D+  + 
Sbjct: 129 SGELKLDLAAKQVTLSDEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDP 186

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 187 NTIEVMVSRLRKKLTRDGIDNPIVTIRGQGYKFN 220


>gi|170769721|ref|ZP_02904174.1| DNA-binding response regulator BaeR [Escherichia albertii TW07627]
 gi|170121335|gb|EDS90266.1| DNA-binding response regulator BaeR [Escherichia albertii TW07627]
          Length = 240

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP+I ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDVPIIMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|42779797|ref|NP_977044.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735714|gb|AAS39652.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 225

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIKAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYDGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220


>gi|332663776|ref|YP_004446564.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332590|gb|AEE49691.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 224

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G K+LE   + +   +  +I IS   +L+  +     G DD ++KP H  E+ AR+ A
Sbjct: 57  GDGIKILE--ELKKQQKEEGVIIISAKNALEDKVLGLQLGADDYLSKPFHLSELAARIYA 114

Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR + +N N  E   +++    +   V   +  L ++E  +L Y + N+ + +AK  +
Sbjct: 115 VIRRKQFANSNLIEQNELKIDLLAKSIWVNENLVSLTKKEFDLLLYFVGNKNRVIAKGAL 174

Query: 174 FSAIYGLFDEAVE-ENVVESHISKLRKKLRN 203
              + G F + ++  + V +HI  L+KKL +
Sbjct: 175 AEHLSGDFADMLDNHDFVYAHIKNLKKKLTD 205


>gi|329928026|ref|ZP_08282030.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|328938130|gb|EGG34527.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 226

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 85/161 (52%), Gaps = 2/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR ++ +P++ ++     +  +  F+ G DD + KP    E++ RV A+ +R +V
Sbjct: 63  ELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQV 122

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++  T G +++     + +   EVF LP +E  +L  L +  G  + + ++   I+G 
Sbjct: 123 AASQTVTIGKLQMNRRTYEVKAGEEVFTLPLKEFELLFKLASYPGSTLPRDRLIEEIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D    E  ++ H+++LR++   +     + + R LGY ++
Sbjct: 182 YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLE 222


>gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 235

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 20/200 (10%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGISDYPSLQ 85
             +L+ EE L+ + +E    I   ++      LE+ R +R+H   S++P++ +S   + +
Sbjct: 29  ITALDGEEGLRLAQQEPPDLIILDVMLPKVDGLEVCRCLRSHPSTSRLPILMVS---ARR 85

Query: 86  TTLDF---FDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRA--ETGPIRVFSD 136
            T+D     + G DD + KP   RE+ ARV A  RR +    V++N +    G + +  D
Sbjct: 86  ETVDHVVGLEMGADDYITKPFSPRELAARVKANLRRAQYDKLVASNTSLIRVGGLEMNLD 145

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
             +  V+G       +E ++L  LM++ GK   +  +   ++G FD  V+   V+ HI  
Sbjct: 146 KFEVHVEGTPVNFTPKEFKLLHVLMSHPGKVFTREMLLEQVWG-FDNNVDTRTVDVHI-- 202

Query: 197 LRKKLRNKLGFDPVDSKRFL 216
             + +R K+  DP + K  L
Sbjct: 203 --RYVRQKIEVDPGNPKYIL 220


>gi|303247778|ref|ZP_07334047.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302490862|gb|EFL50761.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 220

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 15/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D  ++  G     G  G++++   S +      ++   D   ++  L  G G  V
Sbjct: 3   ILIIEDDQVLAAGLKVGLGLAGMTVDMVGSCDAARTALATTTFDAVVLDLMLPDGSGLDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R  +   + P++ ++    +   +   D G DD   KP    E+ AR+ AI RR  
Sbjct: 63  LRAMR--QRGDRTPVLLLTALDEITDRVKGLDLGADDYCGKPFDLDELAARIRAIGRR-- 118

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               RA        I +        + G+   L RRE  +L  LM + G   +K +I   
Sbjct: 119 -GAGRAAPCLTAAGIALEPASLSATINGQPLTLSRREFAVLALLMEHPGAIRSKGEIEDR 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG + E VE N VE H+  LR     K+G + +++ R LGY +
Sbjct: 178 LYG-WGEEVESNTVEVHVHHLRA----KVGREKIETVRGLGYRM 216


>gi|291534209|emb|CBL07322.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Megamonas hypermegale
           ART12/1]
          Length = 231

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 19/230 (8%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
            ++D   V++  I      G   +GF N+ EF   L+++   D+  ++  L G  G ++L
Sbjct: 6   CVEDDESVRELVIYALQSSGFEAQGFVNAEEFFPVLKNNV-PDLILLDIMLPGIDGIEIL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +  R        P+I ++   S    +   D+G DD V KP    E++AR+ A+ RR   
Sbjct: 65  KEVRKNPKTQHTPIIMLTARGSEYDKITGLDNGADDYVTKPFGVMELIARIKAVLRRSAK 124

Query: 119 LKVSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + V+ ++      A  G + +  D     V  E   L  +E  +L YL+ N+   +++ +
Sbjct: 125 INVAQDKATNDLSASNGLLVLNHDFHKVYVNNEEVILTLKEFELLYYLLKNKNIVISRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           I   ++  ++ A E   V+ HI    K LR+KLG     +++ R +GY I
Sbjct: 185 IMDEVWD-YNYAAETRTVDVHI----KTLRHKLGVASKLIETIRGVGYKI 229


>gi|289752523|ref|ZP_06511901.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis
           EAS054]
 gi|289693110|gb|EFD60539.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis
           EAS054]
          Length = 131

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 69/126 (54%), Gaps = 15/126 (11%)

Query: 106 REILARVAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
           RE++AR+ A+ RR      ++S+   E+GP+R+  +     V G+   LP +E  +LEYL
Sbjct: 10  REVIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYL 69

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRF 215
           M N G+ + + Q+   ++G  D   +   ++ H+    K+LR+K+  DP +     + R 
Sbjct: 70  MRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV----KRLRSKIEADPANPVHLVTVRG 124

Query: 216 LGYSID 221
           LGY ++
Sbjct: 125 LGYKLE 130


>gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 246

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +++ + IR   + P+I ++        +   + G DD + KP   +E+LARV A+ RR  
Sbjct: 83  IDVLKWIRKEHETPVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRRFN 142

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              VS    +   + +  D       G+   +P +E  +L YL +N+ +   + Q+   +
Sbjct: 143 SDNVSKEALQFNGLTIDIDSYTVIYNGKEIKMPPKEFELLYYLASNKNRVFTREQLLCEV 202

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G +D   +   V+ HI +LR+KL
Sbjct: 203 WG-YDYPGDSRTVDVHIKRLREKL 225


>gi|94314245|ref|YP_587454.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93358097|gb|ABF12185.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
          Length = 221

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 7/152 (4%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETG 129
           S VP++ ++   +L+  +   D+G DD + KP    E+LAR+ A++RR   ++++    G
Sbjct: 71  SAVPVLILTARDALEDRIGGLDAGADDYLVKPFEMDELLARMRAVWRRRSGLASSVLGNG 130

Query: 130 PIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
            + +    R   + G     L  RE  +L+ L+A  G  +++ ++   IYG  DE VE N
Sbjct: 131 RVSLDLSTRQATLTGGAPQQLTNREFALLQALLARPGAILSRAELEERIYGWGDE-VESN 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            VE  I  LR+    KLG   + + R +G+ +
Sbjct: 190 AVEFLIHGLRR----KLGSTIIRNVRGVGWQV 217


>gi|119383064|ref|YP_914120.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119372831|gb|ABL68424.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 223

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D G DD + KP    E  AR+ ++ RR   + N+    G + +    R   + G+   L
Sbjct: 91  LDLGADDYLIKPFDIGEFEARIRSLLRRQAGLRNSTVSFGDLVLDQTARSFLLAGQPLDL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P RER +LE L+   GK VA+  I  ++  L D+ +  N +E ++S+LRK+L    G   
Sbjct: 151 PARERGLLELLIMRAGKVVARESIVQSLTSLEDD-LSANAIEQYVSRLRKRL-APAGL-T 207

Query: 210 VDSKRFLGYSID 221
           V + R +GY +D
Sbjct: 208 VRTARGIGYFLD 219


>gi|34763104|ref|ZP_00144075.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887238|gb|EAA24338.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 227

 Score = 58.2 bits (139), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 5/159 (3%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           DV  ++  L  K  K  EL +  R  +  P+I I+   S+   ++  D G +D + KP  
Sbjct: 50  DVVLLDLMLPKKSGK--ELCQEFRKLNNTPIIVITAKDSILDKVELLDLGANDYICKPFA 107

Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
             E+LAR+    R  + S ++       I++    +   +  E   L + E  ILEY M 
Sbjct: 108 MEELLARIRVATRNKENSVDKQFYLEKDIKLDLSAKRVYLGEEEINLTKTEFLILEYFMK 167

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           N+G   ++ +I   ++G +D   EE +V+ +I+ LRKK+
Sbjct: 168 NKGLSCSREKIIIGVWG-YDFDGEEKIVDVYINSLRKKI 205


>gi|332992634|gb|AEF02689.1| two component transcriptional regulator [Alteromonas sp. SN2]
          Length = 229

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 10/206 (4%)

Query: 24  VSLEGFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80
           ++LEGF S    E    + +  +E  +AI    +  G   L + + +R+ S VP+I ++ 
Sbjct: 24  LALEGFTSTVLNEGTHVVDTVKKEVPAAIILDRMLPGVDGLTICKSLRSFSMVPIIMLTA 83

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-- 138
                  L   ++G DD V KP   RE++AR+ A+ RR    N    +     F      
Sbjct: 84  RVDEIDRLIGLEAGADDYVCKPFSAREVVARIQAVLRRATQQNQTESSSEKLTFRHIELD 143

Query: 139 ----DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
               +  V G +  L   E R+L+ +M   G   ++ Q+    Y      V    ++SH+
Sbjct: 144 MSRFECAVDGNIIELTPVEFRLLKTMMTKPGVVYSRDQLMELGYD-DGRVVSNRTIDSHM 202

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220
             LR KL       P+ +   +GY +
Sbjct: 203 KNLRHKLATAEHTSPIHAVYGIGYKV 228


>gi|288906017|ref|YP_003431239.1| two-component response regulator, CovR family [Streptococcus
           gallolyticus UCN34]
 gi|306832036|ref|ZP_07465191.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978984|ref|YP_004288700.1| putative two-component response regulator, CovR [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732743|emb|CBI14317.1| putative two-component response regulator, CovR family
           [Streptococcus gallolyticus UCN34]
 gi|304425962|gb|EFM29079.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178912|emb|CBZ48956.1| putative two-component response regulator, CovR [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 230

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 8/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   +  +I ++   S+   +   D G DD + KP    E+LARV A++RR  V
Sbjct: 63  EITRRLRLEKETSIIMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQDV 122

Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + R +          +R+    R      +   L +RE  +L  L++N  + + + ++ 
Sbjct: 123 ESKREQDSQGKEGLLGLRLNPQNRSAVRGDDEISLTKREYDLLSVLLSNVNRVMTREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++++  +D  +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 ASVWR-YDTDIETNVVDVYIRYLRGKVDIPGKESYIQTVRGMGYII 227


>gi|83310943|ref|YP_421207.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945784|dbj|BAE50648.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 204

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 11/167 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R HS+VP+I +S        +   + G DD V KP   RE++ARV A+ RR++ 
Sbjct: 37  EVCRRLRRHSRVPIIFLSSRDDEIDRVLGLELGGDDYVGKPFSPRELVARVKAVLRRMQP 96

Query: 121 ------VSNNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++      G +R+  +G R    + EV  L   E  IL  L    GK  ++  +
Sbjct: 97  DQSPDAIAKTELRCGRLRLDLEGFRAFWDEAEVV-LTVTEFSILRTLAERPGKVFSRDGL 155

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               Y L D  V +  ++SH+ ++R K +   G  PV++   LGY +
Sbjct: 156 MDGAYAL-DHYVSDRTIDSHVRRVRAKFQAA-GGGPVETVHGLGYKL 200


>gi|332296523|ref|YP_004438446.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179626|gb|AEE15315.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 230

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 12/200 (6%)

Query: 32  LEFEEWLQSSAREDVSAIEAF-----------LIGKGEKVLELPRIIRAHSQVPLIGISD 80
           LE E +L  +A     AI  F           L+  G    E+ + ++A   V +I ++ 
Sbjct: 24  LEHEGYLVDTADNGYEAIGLFSEKDFDLVLLDLMIPGIDGFEVCKRMKAQKDVAIIILTA 83

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140
             +++  +   D G DD V KP    E++AR+ A  R+      +   G + +    R+ 
Sbjct: 84  RDAVKDKVKGLDLGADDYVTKPFVIEELIARIRARLRKGTKDLEQIVVGDLVISPQTREV 143

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           +   +   L ++E  +L+YL  N GK + +  I + ++G +D    ENVV+ +I  LR K
Sbjct: 144 KRADKSVNLSKKEFDLLKYLAENVGKVLNRDTILNHVWG-YDYYGSENVVDVYIRYLRAK 202

Query: 201 LRNKLGFDPVDSKRFLGYSI 220
           + +      + + R +GY++
Sbjct: 203 IDDPFENKILHTVRGVGYAL 222


>gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 233

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 18/141 (12%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVS------NNRAETGPIRVFSDGRDPEVQGEVF 147
           G DD + KP    E+ ARV AIYRR+ +S       +  E+GP  +    R     GE  
Sbjct: 97  GADDYITKPFSPSELTARVDAIYRRVCMSFIKNEQQSVIESGPFTLNLKSRTVTKDGEPI 156

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV--EENVVESHISKLRKKLRNKL 205
            L + E +I+E+ M N+   + +  I + I+G   E+   ++ +V+ +I ++R K+    
Sbjct: 157 ELTQVEYQIMEFFMNNKNTALDRASILNHIWG---ESYYGDDKIVDVNIRRIRMKIEE-- 211

Query: 206 GFDPVDSKRFL---GYSIDWN 223
             +P + K  +   GY   WN
Sbjct: 212 --EPSNPKYIITIWGYGYKWN 230


>gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 233

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 27/207 (13%)

Query: 18  LFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV--------------LE 62
           L  DD   +    S+  E E L++   ED  AIEA  + + +K               +E
Sbjct: 11  LIVDDDKEIRNLISVYLENEGLKTQKAED--AIEALKLLEEKKFDLIILDVMMPNMDGIE 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           +   IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K  
Sbjct: 69  VCMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKY 128

Query: 121 ---VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                NN++  E G + V +D R   V+G    L  +E  IL+ L  N+G  ++  +I+ 
Sbjct: 129 NMHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIYE 188

Query: 176 AIYG-LFDEAVEENVVESHISKLRKKL 201
           A++   F ++  +N V  HI+K+R K+
Sbjct: 189 AVWKDAFYKS--DNTVMVHITKIRDKI 213


>gi|171059305|ref|YP_001791654.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170776750|gb|ACB34889.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 239

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 16/154 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNR 125
           + P++ ++   ++   ++  D+G DD V KPI   E+ AR+ A+ RR        +S N 
Sbjct: 72  KTPVLVLTARDAVPQRIETLDAGADDYVVKPIDLHELAARLRALVRRSHGQVQDLISVNG 131

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            +  P       R+  + G+   L  RE  +L  LM   G+ + + Q+ + +YG + E V
Sbjct: 132 VDLDP-----GAREVRLDGDPIKLSTREFDLLHALMLRPGRVLTREQLENHLYG-WGEEV 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             N VE H+  LR+KL N+     + + R +GY+
Sbjct: 186 GSNTVEVHVHHLRRKLGNQR----IRTVRGVGYA 215


>gi|251797185|ref|YP_003011916.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544811|gb|ACT01830.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 219

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 1/130 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           +VP+I ++   +L   +     G DD + KP    E+LAR+ A+ RR    ++R   G +
Sbjct: 71  EVPVIFLTARNALVDKVKGLKMGADDYIVKPFEAMELLARIEAVLRRYGRKSDRLNFGGL 130

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +  + R  + +G +  L  +E  +L  L+ NR K +++ +I   ++  ++ + E   V+
Sbjct: 131 EIHLEERIVKKEGVIIELTMKEYELLLLLINNRNKALSREKILELVWD-YEYSGETRTVD 189

Query: 192 SHISKLRKKL 201
            HI K+RKKL
Sbjct: 190 IHIQKIRKKL 199


>gi|163815964|ref|ZP_02207334.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759]
 gi|158448774|gb|EDP25769.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759]
          Length = 224

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 5/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TG 129
           ++P+I ++   +    +   D G DD + KP    E+++RV A+ RR +   +  +   G
Sbjct: 76  RIPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRRSRALQDDKQLVIG 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I + S+ R+  V GE+  L  +E  +L+ LM N G  + +  I S ++G  D   E   
Sbjct: 136 DITLDSERREVHVGGELCELTFKEFELLKLLMVNAGIVLHRDTIMSDVWGT-DYEGESRT 194

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ HI  LR+KL      + + + R +GY ++
Sbjct: 195 LDMHIKTLRQKLGE--AGNMIKTVRNVGYKME 224


>gi|160941700|ref|ZP_02089027.1| hypothetical protein CLOBOL_06596 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435197|gb|EDP12964.1| hypothetical protein CLOBOL_06596 [Clostridium bolteae ATCC
           BAA-613]
          Length = 228

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 17/192 (8%)

Query: 37  WLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           WL      D + ++  L G  G  +L   R  +   QVP++ ++    L+  +   +SG 
Sbjct: 37  WLLKDGGYDAAVLDLMLPGMDGITLLREAR--KMGCQVPVLILTAKSELEDRVTGLESGA 94

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFSDGRDPEVQG--EVFP 148
           D  + KP   +E+LA +  I RR      R E  P       V     D  ++G  +   
Sbjct: 95  DYYLTKPFDMQELLAVMKTILRR------RGEMIPENLNLGNVSLSQADYTLRGPHKSIQ 148

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L ++E  I+  LM NR   V+K  + S ++G   EAVE N VE +IS LRKKL       
Sbjct: 149 LGKKEYDIMRILMVNRDMVVSKDTLLSKVWGNDAEAVENN-VEIYISFLRKKLDFLKADV 207

Query: 209 PVDSKRFLGYSI 220
            + + R LGY I
Sbjct: 208 MIVTIRKLGYRI 219


>gi|154251400|ref|YP_001412224.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155350|gb|ABS62567.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 225

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 5/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETG 129
           + P++ +S    +   +    +G DD + KP    E+LAR+  + RR        R + G
Sbjct: 72  RTPVLFLSALGEVDDRIKGLKAGGDDYLTKPYAFAELLARIEVLVRRANPDQVRTRLQVG 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +    R     G    L  RE R+LEYLM + G+ V +T +   ++   FD   + N
Sbjct: 132 SLEIDLLARKVIRDGTEIDLQPREFRLLEYLMKHAGQVVTRTMLLENVWEYHFDP--QTN 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V++ HIS+LR K+        + + R  GYS+
Sbjct: 190 VIDVHISRLRAKIDKNFEQPLLHTVRGAGYSL 221


>gi|254976959|ref|ZP_05273431.1| two-component system, response regulator [Clostridium difficile
           QCD-66c26]
 gi|255651878|ref|ZP_05398780.1| two-component system, response regulator [Clostridium difficile
           QCD-37x79]
 gi|260687162|ref|YP_003218296.1| two-component system, response regulator [Clostridium difficile
           R20291]
 gi|306520362|ref|ZP_07406709.1| two-component system, response regulator [Clostridium difficile
           QCD-32g58]
 gi|260213179|emb|CBE04640.1| two-component system, response regulator [Clostridium difficile
           R20291]
          Length = 217

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ ++ ++  
Sbjct: 59  LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNY 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++  
Sbjct: 119 GHLEKFEYNDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKD 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 179 SEETPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215


>gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 236

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 13/150 (8%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R   ++ P++ ++   +    +     G DD V KP    E+ AR+ A+ RR  
Sbjct: 71  EVIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR-- 128

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRR------ERRILEYLMANRGKRVAKTQI 173
              +  E  P R+ F+D    E   EV+   +R      E ++L YLM N  + ++K QI
Sbjct: 129 --TSTGEQAPARLTFADLELDEETHEVYRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              ++  +D   ++N+VES+IS LR+K+ N
Sbjct: 187 LDHVWN-YDFRGDDNIVESYISYLRRKVDN 215


>gi|297565268|ref|YP_003684240.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849717|gb|ADH62732.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 217

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 91/175 (52%), Gaps = 7/175 (4%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D+  ++  L    E   EL + +R A    P++ ++   SL   +   + G DD + KP 
Sbjct: 44  DLIVLDVMLPEGEEAGFELAKELREAGFHQPILFLTARESLPDRVRGLEVG-DDYLAKPF 102

Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
              E++AR+ A+ RR +V     + GP+ V  + R+   +G++  L  +E ++LE  + N
Sbjct: 103 ALAELVARLRALARRGEVRPRVVQAGPLEVALEKREVRYRGQMVRLTAKEYQVLELFVIN 162

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            G+   + ++   ++G   E+ + N+++ ++  LRKKL + +    +++ R LGY
Sbjct: 163 PGRIFTREEVLERVWGPGFES-DSNLIDVYVKNLRKKLYDNV----IETVRGLGY 212


>gi|254501571|ref|ZP_05113722.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437642|gb|EEE44321.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 239

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD + ++D    L  D+G  +    +        S    D+  ++  +   GE   
Sbjct: 20  LLLVDDDSRIRDLLGRLLKDNGYRVSAAANAAEARICLSGLEFDLIILDVMM--PGETGT 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R  SQVP++ ++        +   ++GVDD + KP   +E+L R+ AI RR + 
Sbjct: 78  ELATSLRETSQVPILMLTARTDAPDRIAGLEAGVDDYLGKPFEPKELLLRIGAILRRGQY 137

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 T    GP   ++  R     G+    L  RE++IL       G  V + +I   
Sbjct: 138 QPPTTVTEIRFGPF-CYNTSRGELKNGDSSIRLTDREKQILSIFAEQPGATVPRHKIVGD 196

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSIDWN 223
                D  + E  V+  I++LR+K+ +  G +PV   + R +GY +  +
Sbjct: 197 -----DSGLGERTVDVQINRLRRKIEDDPG-NPVYLQTVRGIGYRLACD 239


>gi|164686356|ref|ZP_02210386.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM
           16795]
 gi|164601958|gb|EDQ95423.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM
           16795]
          Length = 227

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 10/136 (7%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV---- 146
            + G DD + KP   +E+LAR+ ++ RR  ++ N+ E   +    D R   ++ EV    
Sbjct: 95  LEEGADDYITKPFGIKELLARINSVLRRYNMTTNKVE--DVLTVKDIRMDLIKHEVTKKD 152

Query: 147 --FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
               L  +E  +L+ L+ N+GK +++  +   ++G ++   E   V+ HI  LRKK+ N 
Sbjct: 153 KKIDLTIKEFDLLKLLLQNKGKVLSRNFLLDKVWG-YEYFGETRTVDVHIRYLRKKIEND 211

Query: 205 LGFDPVDSKRFLGYSI 220
            G   +++ R +GY I
Sbjct: 212 -GEKYIETIRGIGYKI 226


>gi|126649989|ref|ZP_01722222.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
 gi|126593161|gb|EAZ87123.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
          Length = 228

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 23/170 (13%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR     P+I ++        ++ F  G DD + KP    E++ARV A  RR  + N   
Sbjct: 66  IRETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELIARVKAQLRRFTLYNQSS 125

Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N  +   + +  + R   +      L   E  IL YL +NRGK ++  ++F  I+G
Sbjct: 126 KPHENTIDFAGLMMNKNTRQVLLNERQLSLTPTEFSILWYLCSNRGKVISSEELFQEIWG 185

Query: 180 --LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221
              F+     N V  HI  LR+K++     D V++ +F+      GY+I+
Sbjct: 186 EKYFN---SNNTVMVHIRHLREKMK-----DSVENPKFIKTVWGVGYTIE 227


>gi|161830121|ref|YP_001597079.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
 gi|161761988|gb|ABX77630.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
          Length = 223

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 17/226 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + DG  A     G +++     +    + SS  E    I   L       L+
Sbjct: 4   LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR  +   P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 64  VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR--- 120

Query: 122 SNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S  RA+  PI    D   DP      ++ +   + RRE  +L+ L+ N G+ +++ Q+  
Sbjct: 121 SKERAK--PIISHGDITLDPASHVVTLKKKEVMVARREFALLQKLLENAGRVISREQLNQ 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +YG + E ++ N +E HI  LRK+   KL    + + R +GY ++
Sbjct: 179 TLYG-WGENIDSNALEVHIHNLRKRFGAKL----IRTIRGVGYMVE 219


>gi|107104462|ref|ZP_01368380.1| hypothetical protein PaerPA_01005539 [Pseudomonas aeruginosa PACS2]
          Length = 212

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 19/192 (9%)

Query: 23  GVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGKGEKVLELPRIIRAHS---QVP 74
            + + G+  LE E   Q+ A     + D+  ++  L   G   +EL R ++       +P
Sbjct: 5   ALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--PGTSGIELARRLKRDELTVDIP 62

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134
           +I ++        +   + G DD + KP   RE++AR+ A+ RR    ++ A   PI V 
Sbjct: 63  IIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTGPGDSEA---PIEVG 119

Query: 135 SDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
               DP      + G+   +   E R+L++ M ++ +   + Q+   ++G  +  VEE  
Sbjct: 120 GLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVWG-GNVYVEERT 178

Query: 190 VESHISKLRKKL 201
           V+ HI +LRK L
Sbjct: 179 VDVHIRRLRKAL 190


>gi|332530601|ref|ZP_08406535.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis
           ATCC 19624]
 gi|332039938|gb|EGI76330.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis
           ATCC 19624]
          Length = 235

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 6/198 (3%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF +   +  L   A     A +  L+     G   + + R +RA    PLI ++    
Sbjct: 27  EGFATTHVDNGLAVEAAVRAHAPDVILLDLMLPGLDGISVCRQLRAFCHAPLIMLTARVD 86

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEV 142
               L   + G DD + KP + RE++ARV A  RR        A+ G +++         
Sbjct: 87  ELDRLLGLEVGADDYLCKPYNPREVVARVKAQLRRAAWGPPASAQPGTLQLDDATLRASY 146

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            G+   L   E R+L  L A  G+ +++ Q+   ++     A+ +  ++SH+  LR+KL 
Sbjct: 147 AGQALDLTPAEFRLLSSLAAQAGRILSRAQLLDHLHD-DGRAITDRAIDSHVRNLRRKLD 205

Query: 203 NKL-GFDPVDSKRFLGYS 219
               G DP+ S   +GY+
Sbjct: 206 AAAPGRDPIRSVYGVGYA 223


>gi|302670114|ref|YP_003830074.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302394587|gb|ADL33492.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 220

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S  P+I +S        L    SG DD + KP     ++A++  I++R +++ +  
Sbjct: 67  VREKSNTPVIMVSAKLGKDDKLSALISGADDYIEKPYDIDILIAKIKGIFKR-RLAIDEI 125

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G I +          G+V     +E  +L+ LM N+G  + K  IFS I+G  D   E
Sbjct: 126 TDGNITLDLVHEQIIKDGQVIEATTKEFELLKLLMENKGHTLVKHYIFSTIWG-SDSESE 184

Query: 187 ENVVESHISKLRKKLRN 203
           E  +  HI +LR+KL +
Sbjct: 185 EQTLTVHIRRLREKLED 201


>gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 229

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 11/172 (6%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           E + S  R D+  ++  L GK     ++ R IR   ++P+I +S        +   + G 
Sbjct: 38  EQVISEYRPDLILLDVMLPGKNG--FDICREIRDKYEIPIIFLSAKGEEIDKVLGLEFGA 95

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPL 149
           DD + KP   RE++ARV A+ RR  V N   +     +F       + R  +V      L
Sbjct: 96  DDYITKPFSPREMVARVKAVLRR--VQNRSGKKRDELIFPHLVIDLEARTVQVNNSYVDL 153

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             +E  IL  +  + GK   + +I + I+G +D A E   V+SHI ++R+K+
Sbjct: 154 TPKEFDILVLMARHNGKVFTREEILNRIWG-YDFAGETRAVDSHIKRIRQKI 204


>gi|295110227|emb|CBL24180.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 222

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 20/218 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + L  + Y   +  +G+  EG N       L  S   D+  ++  L G  G+ VL+    
Sbjct: 19  KFLENNKYSVQYALNGI--EGIN-------LCKSFVPDLIILDIMLPGLNGDDVLQK--- 66

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  +  P+I +S    +QT ++    G DD + KP    E+LAR+ A  +R    +N  
Sbjct: 67  LRKFTNAPVIVVSAKTMVQTKIELLKIGADDYMTKPFDLYELLARIEANLKR--TVDNPY 124

Query: 127 ETGPIRVFSDGRDPE----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +     ++ + +       + G + P    E  ILE L+    K  +K  ++ +I+    
Sbjct: 125 QNNNTLIYKNIKINNSLVYINGVLVPFTSTELSILELLLQYPQKIFSKQNLYESIWN-EP 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A +++ + +HIS +RKK+++    D + +   +GY +
Sbjct: 184 YAYDDDTINTHISHIRKKIKSITNEDYIQTIWGIGYKM 221


>gi|229825839|ref|ZP_04451908.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
 gi|229789859|gb|EEP25973.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
          Length = 232

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA S VP+I ++        +   D G DD + KP    E++AR+ A+ RR+  
Sbjct: 62  EVCRKIRAKSNVPIILVTARGEGFEKIMGLDIGADDYIVKPFSPSEVMARLRAVLRRMVA 121

Query: 120 -KVSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + S N A    I++ +     D     + GE   L ++E   +  L  N  K   +  +
Sbjct: 122 PESSANVANENFIKIDNLEINLDEYSLSIGGEKIALTKKEIETMWTLAENPNKVFTRDNL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
             +++G FD   +   V+SHI +LR KL
Sbjct: 182 LDSLWG-FDYFGDSRTVDSHIKRLRAKL 208


>gi|228924359|ref|ZP_04087606.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835308|gb|EEM80702.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 242

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 69  IEVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V           R E   I +         +G+  PL  +E  +L +  +N  +   K+Q
Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFASNPEQVFTKSQ 188

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           +F  ++G  D  +E +N V  HI KLRKK+
Sbjct: 189 LFRNVWG--DNYLEDDNTVMVHIRKLRKKI 216


>gi|254501155|ref|ZP_05113306.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437226|gb|EEE43905.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 228

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           ++ +  P++ +S    +   +    +G DD + KP    E+ ARV A+ RR K ++    
Sbjct: 69  KSGNHTPVLILSALGQVDDRVTGLKAGGDDYLPKPYAFTELQARVEALARRPKSASQVET 128

Query: 128 TGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           T  +      R+    R  +++    PL  RE R+LEYLM + G+ V +T +   ++   
Sbjct: 129 TYTVGDLTLDRMAHSCRRGDME---IPLQPREFRLLEYLMQHAGQVVTRTMLLENVWEYH 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + NV++ HIS+LR K+        + + R  GY+I
Sbjct: 186 FDP--QTNVIDVHISRLRGKIDKGFDVPLLHTIRGAGYTI 223


>gi|212212388|ref|YP_002303324.1| QseB [Coxiella burnetii CbuG_Q212]
 gi|212010798|gb|ACJ18179.1| QseB [Coxiella burnetii CbuG_Q212]
          Length = 232

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 17/226 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + DG  A     G +++     +    + SS  E    I   L       L+
Sbjct: 13  LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 72

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR  +   P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 73  VLKTIREKNDPTPVVILTARDTVDDRIKGLDTGSDDYMTKPFDLEELCARMRAMQRR--- 129

Query: 122 SNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S  RA+  PI    D   DP      ++ +   + RRE  +L+ L+ N G+ +++ Q+  
Sbjct: 130 SKERAK--PIISHGDITLDPASHVVTLKKKEVMVSRREFALLQKLLENAGRVISREQLNQ 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +YG + E ++ N +E HI  LRK+   KL    + + R +GY ++
Sbjct: 188 TLYG-WGENIDSNALEVHIHNLRKRFGAKL----IRTIRGVGYMVE 228


>gi|150019307|ref|YP_001311561.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905772|gb|ABR36605.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 229

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           E+  II+   +  +I ++    +   +   D G DD + KP   +E+LAR+ A I     
Sbjct: 69  EVCSIIKKSIKTSVIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNSFP 128

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G  +V     +   + +V  LP  +  +L +L+ N G  ++K+ I   ++G 
Sbjct: 129 ELSDITNIGNFKVDDKAHEITYREKVLDLPPTQYNLLSFLLMNNGIALSKSLILEKVWG- 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E+N+VE +I  LR K+ +K   + + + R +GY +
Sbjct: 188 YDFNGEDNIVEVYIRYLRDKIGDK-DHNIIKTVRGVGYKM 226


>gi|299536072|ref|ZP_07049389.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
 gi|298728496|gb|EFI69054.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 24/233 (10%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLI----- 54
           + VL D+RA+ +   I L        EG N++     ++ +  E +    + +L+     
Sbjct: 6   ILVLEDERAIAEMIEIIL------RKEGINNITLCNTIEEAKDEMNTKTFDFYLLDIMLP 59

Query: 55  -GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV- 112
            G G   L++   IR  S  P+  ++   S    L  F +G DD + KP +  E++ARV 
Sbjct: 60  DGSG---LDMANSIREKSDAPIFYLTAKSSDADKLRGFMNGADDYITKPFNPLELVARVK 116

Query: 113 AAIYRRLK---VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             + R +K   V  N   T     F  D  + EV G    +  R   +L+YL  N G+ +
Sbjct: 117 VQLVRYMKKKSVPENHIFTCSRFTFDIDAAEIEVDGVKEIISGRLFHLLKYLCDNAGQVL 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +K QI+  ++G  D   ++N V  HI KLR+K+    G    + + R +GY +
Sbjct: 177 SKEQIYERVWG--DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYKL 227


>gi|258512529|ref|YP_003185963.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 239

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 102/213 (47%), Gaps = 15/213 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +++DD A ++      F   G  +E  +   + +E+  Q +++ D+  ++  L   G   
Sbjct: 5   LVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLML--PGMDG 62

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R    ++P+I ++        +   + G DD V KP   RE++AR  A+ RR 
Sbjct: 63  LEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRT 122

Query: 120 KVSNNRAE-TGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +     A+ T   +V   G         +  V+G++     +E  +L+Y M N    +++
Sbjct: 123 ESREEDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            Q+   ++G +  A +  +V+ H+S LR+K+ +
Sbjct: 183 DQLLDRVWG-YSAATDTRIVDVHVSHLREKIED 214


>gi|167760489|ref|ZP_02432616.1| hypothetical protein CLOSCI_02863 [Clostridium scindens ATCC 35704]
 gi|167661855|gb|EDS05985.1| hypothetical protein CLOSCI_02863 [Clostridium scindens ATCC 35704]
          Length = 232

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 6/151 (3%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++ E  R+ + ++Q+P+I ++        +   D G DD V KP    E+ +R+ A
Sbjct: 59  GTGFEICE--RVRKQNTQIPIIFLTASDEEVNVIRGLDCGGDDYVTKPFKLGELCSRIRA 116

Query: 115 IYRRLKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + RR  +S     N  E G I +   G    + G+V  L   E R+L  L+ N  + V++
Sbjct: 117 LLRRAGISAQDKTNILECGDILIDLLGSRVLLNGKVLDLTSAEYRLLCLLVRNANRIVSR 176

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             I + ++      V++N +  +I +LR+K+
Sbjct: 177 EIILNDLWDDAGNFVDDNTLSVYIRRLREKV 207


>gi|188583346|ref|YP_001926791.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179346844|gb|ACB82256.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 220

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 14/170 (8%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  VL   R  R + + P++ ++   ++   +   D G DD + KP    E+ AR+ A
Sbjct: 57  GSGLDVLRGLR--RRNDRTPVVLLTARDAVTDRIAGLDDGADDYLGKPFDLDELSARIRA 114

Query: 115 IYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + RR   ++ RA    E G IR+        V G    + RRE  +L  LM       +K
Sbjct: 115 VVRR---ASGRAAALLEHGGIRLDPGSLAVTVDGVPVAVSRREVMVLAALMERPNVLRSK 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   +YG + E VE N VE H+  LR     K+G   +++ R LGY +
Sbjct: 172 VELEERLYG-WQEEVESNAVEVHVHNLRA----KIGKHAIETVRGLGYRM 216


>gi|116250319|ref|YP_766157.1| phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241202937|ref|YP_002974033.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|115254967|emb|CAK06041.1| putative phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|240856827|gb|ACS54494.1| two component transcriptional regulator PhoB, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 227

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +    +G DD V KP    E++ARV A+ R
Sbjct: 62  IELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  V +   + G I +  +      +     L   E R+LE+LM++ G+  +++Q+  
Sbjct: 122 RARPEVLSTVLKCGDIELDRETHRVHRKTREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 235

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 22/224 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  L   DG           EE L+S A      I   L+   +  LE+ R IR 
Sbjct: 21  LQKEGYDTLAAFDG-----------EEALESFASYQPDLIVLDLMLPKKDGLEVCREIRK 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS------- 122
            S VP+I ++        +   + G DD V KP  +RE+ AR+ A  RR +V+       
Sbjct: 70  TSSVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANLRRSQVNVEAAEEK 129

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N    G + +  D       G+   L  RE  +L YL  + G+ + +  +   ++G 
Sbjct: 130 EDSNELNVGNLTIHEDAYYVSKNGKEVDLTHREFELLHYLSKHLGQVMTREHLLQTVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
           +D   +   V+  + +LR+K+ +       + ++R +GY +  N
Sbjct: 189 YDYFGDVRTVDVTVRRLREKIEDTPSHPKLLMTRRGVGYYLQDN 232


>gi|325265306|ref|ZP_08132031.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029485|gb|EGB90775.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 247

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IRA S+VP+I +S        +   + G DD + KP     + A++ A+ RR    +   
Sbjct: 91  IRAISKVPMIFLSSASDNMNIVMAMNMGGDDFIEKPFDLNVLTAKIQALLRRTYSFQGQL 150

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + +  +      +G+   L + + +IL+ LM N GK V + +I   ++   DE
Sbjct: 151 NVLEYKGVILNLNDASLTYEGKKLELTKNDFKILQLLMENAGKIVKRERIMERLWE-SDE 209

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++N +  +I++LR+KL      D + +K+ +GY ++
Sbjct: 210 FIDDNTLTVNITRLRRKLEGIGIADFISTKKGIGYLLE 247


>gi|320156641|ref|YP_004189020.1| two-component system response regulator QseB [Vibrio vulnificus
           MO6-24/O]
 gi|319931953|gb|ADV86817.1| two-component system response regulator QseB [Vibrio vulnificus
           MO6-24/O]
          Length = 219

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 22/219 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           +L K G++     DG+  +       EEW        +  ++   + KG        I  
Sbjct: 19  SLEKTGWVPELSQDGI--DALYRATSEEWDAIVLDLGLPKLDGLTVLKG--------IRD 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +  
Sbjct: 69  ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             I   S D R  +V  QG+   L   E +++ Y + N  K +++T++   IY   FD  
Sbjct: 127 MQIGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFVHNADKVISRTELVEHIYKQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + N +E  I ++RKK+   +    + + R LGY ++ N
Sbjct: 186 -DSNTIEVFIGRIRKKIAPNI----IKTVRGLGYQLNAN 219


>gi|312138449|ref|YP_004005785.1| two component system response regulator [Rhodococcus equi 103S]
 gi|311887788|emb|CBH47100.1| two component system response regulator [Rhodococcus equi 103S]
          Length = 231

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII----RAHSQVPLIGI 78
           G+ L GF  L   +   +      +A +A ++     VL+   ++    RA ++VP+  +
Sbjct: 21  GLRLSGFTVLTASDGAVALKVVAEAAPDAVVLDMNMPVLDGTGVVTALRRAGNEVPICVL 80

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIR 132
           S   S+   +   +SG DD + KP    E++AR+ A+ RR  V+    +T      GP+ 
Sbjct: 81  SARSSVDDRIAGLESGADDYLVKPFVLAELVARIRAMLRRRSVAVAATDTDPPIVVGPLS 140

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   +      L +RE  + E L  N G  +++ ++   ++G +D   + NVV+ 
Sbjct: 141 VDLAGRRVWLGDTEITLTKREFELTEVLARNAGVVLSRERLLDLVWG-YDFVADTNVVDV 199

Query: 193 HISKLRKK 200
            +  LR+K
Sbjct: 200 FVGYLRRK 207


>gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 235

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 4/128 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD V KP    E++AR+ A+ RR     +   T     + +  D  +    GE+  L 
Sbjct: 101 GGDDYVTKPFSLDEVVARIRAVLRRTASGEDENATISVADLELDDDAHEVRRAGEIIDLS 160

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
             E ++L YLM N  + ++K+QI   ++  +D   + ++VES+IS LR+K+        +
Sbjct: 161 PTEFKLLRYLMMNPNRVLSKSQILDHVWE-YDFNGDASIVESYISYLRRKVDRPEWPALI 219

Query: 211 DSKRFLGY 218
            +KR +GY
Sbjct: 220 QTKRGVGY 227


>gi|254787133|ref|YP_003074562.1| RstA family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237685183|gb|ACR12447.1| transcriptional regulatory protein RstA [Teredinibacter turnerae
           T7901]
          Length = 229

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 7/161 (4%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           D+  ++  L GK    L + + IR     P++ ++   S    +   + G DD V KP  
Sbjct: 47  DIVILDVMLPGKDG--LTICKEIRPRYNGPILMLTARDSDADQVSGLEYGADDYVIKPAE 104

Query: 105 HREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
            R +LAR+ A+ RR +   ++ ++    G + +F   R+ ++ GE+  L   E  +L   
Sbjct: 105 PRVLLARIRALLRRYQQGEDKEQSELHFGDLSIFVSSREVKLGGEIISLSSHEFDMLVTF 164

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
               GK +++  +F+ IYG   + ++   ++  IS+LRKKL
Sbjct: 165 AKQPGKVLSREYLFNVIYGRPYDGMDRT-IDVRISQLRKKL 204


>gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 252

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 20/208 (9%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRA-HSQVPLIG 77
           ++L +E W  ++A   V A++A    + + V           LE+ R IR     VP++ 
Sbjct: 38  SALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIMLPDFDGLEVMRRIRGRQPSVPVLF 97

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRV 133
           ++   +++  +    +G DD V KP    E++AR+ A+ RR     +  ++  E G +R+
Sbjct: 98  LTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRRSGAHAEQDDHVLEVGDLRM 157

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D  +         L   E  +L YLM N  + ++K QI   ++  +D   ++N+VE +
Sbjct: 158 DEDSHEVWRGDTEIHLTATEFELLCYLMRNPRRVLSKPQILDRVWN-YDFGGQDNIVELY 216

Query: 194 ISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           IS LR+K+    G +P + + R +GY +
Sbjct: 217 ISYLRRKIDK--GREPMIHTMRGVGYVL 242


>gi|153008102|ref|YP_001369317.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|239833192|ref|ZP_04681521.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ochrobactrum intermedium LMG 3301]
 gi|151559990|gb|ABS13488.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
 gi|239825459|gb|EEQ97027.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ochrobactrum intermedium LMG 3301]
          Length = 228

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +     G DD V KP    E+LARV A+ R
Sbjct: 64  IELCRRLRQWPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         LKV +   +    RV+   ++ EV+     L   E R+LEY M + G+  
Sbjct: 124 RSNPSILSHVLKVGDLVLDRQQHRVYR--KEKEVR-----LGPTEFRLLEYFMMSPGRVF 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++Q+   ++G  D  V++  V+ H+ +LRK +      DP+ + R  GYS
Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRALDPIRTVRGAGYS 226


>gi|150016917|ref|YP_001309171.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903382|gb|ABR34215.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 26/174 (14%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL +++R     P+I ++        +   D G DD + KP   RE+++R+ ++ RR   
Sbjct: 61  ELCKLVREKDDTPVIFLTACDDEVNVVMGLDIGADDYITKPFRIRELISRIRSVIRRYGK 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+++N R  T   +V+ +  D E+      L   E R+L     N G+ +++ 
Sbjct: 121 DSSSKAILELNNIRINTLDAKVYKN--DAEIT-----LTALEYRLLLIFANNPGQVLSRN 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
           QI   I+ +  + V +N +  +I ++R+KL +    DP     + + R LGY +
Sbjct: 174 QILEGIWDVAGDFVNDNTLTVYIKRIREKLED----DPQKPTIIKTVRGLGYKV 223


>gi|332528949|ref|ZP_08404916.1| two component system regulatory protein [Hylemonella gracilis ATCC
           19624]
 gi|332041610|gb|EGI77969.1| two component system regulatory protein [Hylemonella gracilis ATCC
           19624]
          Length = 233

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 24/192 (12%)

Query: 34  FEEWLQSSAREDVSAIEAFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDY 81
           +E  L +S RE ++A    L  +G  +L            E+ R +RA SQVP+I +S  
Sbjct: 31  YEVTLAASGREGLAA----LADRGADLLILDIGLPDIDGHEVLRELRAWSQVPVIMLSVR 86

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGR 138
                 +   D G +D V KP   +E++AR+  + R+   +K  N   + G +R+    R
Sbjct: 87  AGESEKVMALDEGANDYVTKPFGTQELMARIRVLLRQQADVKHDNALFDDGHLRIDLARR 146

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
           +  + GE+  L R+E  +L  L+ + G+ V + QI   ++G     V       ++  L 
Sbjct: 147 EVRLDGELLALGRKEYALLALLLKHAGRVVTQPQILREVWG-----VTHQDDTHYVRILV 201

Query: 199 KKLRNKLGFDPV 210
            KLR KLG D V
Sbjct: 202 GKLRQKLGDDAV 213


>gi|297201268|ref|ZP_06918665.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712870|gb|EDY56904.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 228

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R    VP+I IS        +   + G DD V KP   RE++AR+ A+ RR +
Sbjct: 58  LDVCRALRERGDVPIIVISARSDETDRVVGLELGADDYVTKPFGVREVIARIRAVMRRAQ 117

Query: 121 VSNNRAETGP----IRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A  GP     R+  D +   V+  GE  PL  +E  +L +L    G  +++ QI 
Sbjct: 118 PRTEVAAAGPDTYGSRLSIDRKAARVRLDGEEVPLAPKEYDLLAFLTEEPGALMSREQIM 177

Query: 175 SAIY--GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A++    F        ++ H++ LR+KL   +  + V   R +G+ ++
Sbjct: 178 EAVWDANWFGPT---KTLDVHVAALRRKLAGAVVIEAV---RGVGFRLE 220


>gi|197210923|gb|ACH48387.1| CpxR [Listonella anguillarum]
          Length = 176

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-----ETGPIRVFSDGRDPEVQGE 145
            + G DD + KP   RE+LAR+ AI RR + SN        E   I+V+   ++   QG+
Sbjct: 38  LELGADDYLPKPFSDRELLARIRAILRRTQTSNGTKHNEVIECQDIQVYPSKQEAYCQGQ 97

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
           +  L   E  +L + + N G+ + K  +   + G     FD A     ++ H+S LRKKL
Sbjct: 98  LLDLTTTEFALLTHFVQNPGETLTKEALSLDVLGKRLAAFDRA-----IDMHVSNLRKKL 152

Query: 202 RNKL-GFDPVDSKRFLGY 218
             ++ G   + + R  GY
Sbjct: 153 PERVDGKSRIKTLRGRGY 170


>gi|86751461|ref|YP_487957.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86574489|gb|ABD09046.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 219

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 15/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++ DG  A     G S++   + E  +   + A    SA+   ++      L
Sbjct: 3   ILVVEDDAMIADGIRAGLTLAGASIDCVANCE--DAAAALAANTFSAVVLDVMLPDGSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA     P++ ++    +   +   DSG DD + KP    E+ AR+ AI    +
Sbjct: 61  DLLRRLRAGGDATPVLLLTALDEVGDRIAGLDSGADDHLGKPFDLDELGARLRAII---R 117

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + RA T    G IR+F    +  + G   PL RRE  +L  LM   G   ++ ++   
Sbjct: 118 RRDGRAATCLEHGAIRLFPAESNATLDGAPVPLSRREFAVLHALMERPGVIRSRGELEER 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG  DE V+ N VE HI  LR     KLG   +++ R +GY I
Sbjct: 178 LYGWGDE-VDSNAVEVHIHNLRA----KLGRAAIETVRGVGYRI 216


>gi|87122181|ref|ZP_01078064.1| Two component response regulator [Marinomonas sp. MED121]
 gi|86162501|gb|EAQ63783.1| Two component response regulator [Marinomonas sp. MED121]
          Length = 226

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 20/221 (9%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK---GEKVLELPRIIRA 69
           D  +A F    +   G+     E+  Q   +  V   +A ++ +   G   L L + +RA
Sbjct: 9   DKEVAQFIGSSLQQIGYVVDRCEDGKQGLLQASVETYDAIILDRMLPGLDGLNLLKTLRA 68

Query: 70  H-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             S VP++ +S    +   ++   +G DD + KP    E+ AR+  ++RR     N  E+
Sbjct: 69  TGSNVPILLLSAMADVSHRVEGLQAGADDYLTKPFAFSELHARLEVMFRR-----NTHES 123

Query: 129 GPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           G                ++ +    +  L  RE R+LEYL+ N+ + V +T +  +++  
Sbjct: 124 GEQTSLHCADLSLNLLTQEAKRAETLISLQPREYRLLEYLLRNQDRVVTRTMLLESVWDY 183

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   + NV++ HIS+LR K+        + + R  GY I
Sbjct: 184 HFDP--QTNVIDVHISRLRNKIDKPFSQVLIHTIRGRGYVI 222


>gi|150392407|ref|YP_001322456.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149952269|gb|ABR50797.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 218

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 1/130 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P+I ++   +L   +     G DD + KP    E+LAR+ A+ RR + S N       
Sbjct: 70  NIPVIFLTAMGNLSDRVKGLKLGADDYIVKPFETIELLARIEAVLRRTQRSLNIFSLDST 129

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V  + R   V G+   L  RE  +LE L+ NR   +++ ++    +  +D   E   V+
Sbjct: 130 VVNLESRVVTVNGDEIELTLREYELLEILIKNRNIALSREKLLKLAWE-YDYFGETRTVD 188

Query: 192 SHISKLRKKL 201
            HI KLRKKL
Sbjct: 189 VHIQKLRKKL 198


>gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+ R H ++ +I ++        +   + G DD + KP +  E++AR+ A+ RR    +N
Sbjct: 67  RVSRQHPEISIIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAVIRRTNKPDN 126

Query: 125 RAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             E   GP+R+  + R     G V  L  RE  +L+  + N  K + + +I + ++G  D
Sbjct: 127 SNEVVIGPLRIDYNCRQVYKNGVVLDLTPREFCLLKVFVNNLNKALTRDEILNWVWG-ED 185

Query: 183 EAVEENVVESHISKLRKKLRN 203
              +   V+ H+ +LR+K+ +
Sbjct: 186 YIGDTKTVDVHVRRLREKIED 206


>gi|269792328|ref|YP_003317232.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 226

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 4/132 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130
           VP+I ++   S++  +   + G DD + KP   +E++ARV A+ RR      R+  + GP
Sbjct: 73  VPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRR-SGDQRRSILKCGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    R+  V     PL RRE  ILE LM    +  ++ +I + ++    +    NVV
Sbjct: 132 LTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQKEYDGT-SNVV 190

Query: 191 ESHISKLRKKLR 202
           + HI  LR KLR
Sbjct: 191 DVHIKYLRDKLR 202


>gi|213610069|ref|ZP_03369895.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 215

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 19/215 (8%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65
           ++ALV++G    F  D V    F+ L  +  L S    ++ A+    I   G   LE+ +
Sbjct: 17  EKALVQNG----FAVDCV----FDGLAADHLLHS----EMYALMVLDINMPGMDGLEVVQ 64

Query: 66  IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
            +R   Q +P++ ++   ++   +   + G DD + KP    E+ AR+ A+ RR     +
Sbjct: 65  RLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGLVH 124

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             +     +F D     +QG+   L  RE+ +L  LM  R + V++ Q+F  ++ L DE 
Sbjct: 125 EVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEV 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
             E+ +E +I +LRKKL+   G D  + + R LGY
Sbjct: 185 SPES-IELYIHRLRKKLQ---GSDVRITTLRGLGY 215


>gi|167758455|ref|ZP_02430582.1| hypothetical protein CLOSCI_00795 [Clostridium scindens ATCC 35704]
 gi|167664352|gb|EDS08482.1| hypothetical protein CLOSCI_00795 [Clostridium scindens ATCC 35704]
          Length = 219

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SN 123
           IR  S+VP+I IS        +   + G D+ + KP     + A+V A+ RR      S 
Sbjct: 62  IRRLSKVPIIFISSAGDNMNIVMAMNMGGDEFIEKPFDLNVVTAKVQAMLRRTYAFHGSA 121

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + +         QGE   L + E +I + L+ N GK V +  + + ++   DE
Sbjct: 122 NIIEHNGLLLNLGDASLSYQGEKIELTKNEFKIFQTLLENAGKIVPRDDLITRLWE-SDE 180

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++EN +  +I++LRKKL      D + +K+ +GY +
Sbjct: 181 FIDENTLTVNIARLRKKLGIAGLEDWIVTKKGIGYMV 217


>gi|302554205|ref|ZP_07306547.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471823|gb|EFL34916.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 219

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 14/159 (8%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A  +VP++ ++         +  D+G DD + KP  +  ++AR+ A+ RR  V    A  
Sbjct: 66  AGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGVG---AGA 122

Query: 129 GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            P+ V  D +       VF       L  +E  +LE+L+   G+ V+K++I   ++    
Sbjct: 123 SPVHVHGDLKVDTAARRVFLGDDEIALTAKEFSVLEHLVLRAGEVVSKSEILEHVWDFAY 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  + N+VE ++S LR+KLR  L    + + R  GY ++
Sbjct: 183 EG-DPNIVEVYVSTLRRKLRAGL----IRTVRGAGYRLE 216


>gi|300704050|ref|YP_003745652.1| response regulator, chey family [Ralstonia solanacearum CFBP2957]
 gi|299071713|emb|CBJ43037.1| putative response regulator, CheY family [Ralstonia solanacearum
           CFBP2957]
          Length = 232

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPI 131
           +P++ ++ + +++  +   + G DD + KP    E+ AR  A+ RR       + + GP+
Sbjct: 73  LPVMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSHGHERTQLQCGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
                     + GE   L  RER +LE L+   G+ V K  I   I+G+ +E+V  + +E
Sbjct: 133 HYDGTSGAFALHGEPLALTGRERAVLEVLVLRDGRAVNKAAISEKIFGI-NESVNADAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LRKKL
Sbjct: 192 IYVHRLRKKL 201


>gi|290475966|ref|YP_003468861.1| response regulator in two-component regulatory system with QseC,
           regulates flagella and motility by quorum sensing (OmpR
           family) [Xenorhabdus bovienii SS-2004]
 gi|289175294|emb|CBJ82097.1| response regulator in two-component regulatory system with QseC,
           regulates flagella and motility by quorum sensing (OmpR
           family) [Xenorhabdus bovienii SS-2004]
          Length = 221

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 7/163 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+ +    +P++ ++    +   +   +SG DD V KP    E+ AR+ A+ RR + +
Sbjct: 63  LSRLRKRGQNLPVLLLTAKVDVADRVKGLNSGADDYVTKPFDFEELEARIRALLRRGMGL 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G + V+ D     +  +   L  RE  +L  L   RG+ V+K Q+F  ++ L 
Sbjct: 123 PLGIQQFGSL-VYEDAGYFLLDNQPLALTPREFSVLTTLFHRRGRPVSKQQLFEQVFSLS 181

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223
           DEA  ++ +E ++ +LRKKL N  +G   + + R LGY ++  
Sbjct: 182 DEANPQS-IELYVHRLRKKLFNSDVG---ICTLRGLGYRLELQ 220


>gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18]
 gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 234

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 10/193 (5%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSG 94
           E L+ +  E+   I   ++  G    E+ R +R + +  P++ ++   + +  +    +G
Sbjct: 39  EALEKAHAENPDLIVLDVMMPGMDGFEVTRRLRENGTTTPVLFLTAKDATEDKVTGLGAG 98

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS-----DGRDPEVQGEVFPL 149
            DD V KP    E++AR+ AI RR + S    +   +RV +     D  +  +  E   L
Sbjct: 99  GDDYVTKPFSLDEVIARIRAILRRSR-SVQEEDDAVLRVDALTLNVDTHEVFLGDEEIDL 157

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFD 208
              E  +L YLM N  + ++K QI   ++  +D   + ++VES+IS LR+K+  N+   +
Sbjct: 158 SPTEFNLLHYLMLNANRVLSKAQILDHVWE-YDFNGDSSIVESYISYLRRKIDNNRENHE 216

Query: 209 P-VDSKRFLGYSI 220
           P + +KR +GY I
Sbjct: 217 PLIHTKRGVGYMI 229


>gi|210611403|ref|ZP_03288897.1| hypothetical protein CLONEX_01087 [Clostridium nexile DSM 1787]
 gi|210151995|gb|EEA83002.1| hypothetical protein CLONEX_01087 [Clostridium nexile DSM 1787]
          Length = 217

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ ++ ++  
Sbjct: 59  LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNY 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++  
Sbjct: 119 GHIEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNSGQVLTRMQIIDYVWKD 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + V++ +I +LRKKLR     D + + R +GY ++
Sbjct: 179 SEEPPYDRVIDVYIKELRKKLR----LDCITTIRNVGYKLE 215


>gi|159899908|ref|YP_001546155.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892947|gb|ABX06027.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 227

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP++ ++   S    +   D G DD +NKP   R + ARV A+ RR  V
Sbjct: 61  EVCRRIRAQSIVPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALLRR--V 118

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              R    + G + + +D +    +G  F  L  RE R+L+YL+AN G+ V+  Q+   +
Sbjct: 119 GGERPTPLQQGDLVLDTDRQSVSREGLGFVALTNREFRLLQYLLANAGRVVSNEQVTIHV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223
           +G     + +  +   + +L  +LR K+  +P + +       +GY +  N
Sbjct: 179 WG--HHGIGDRTL---LKQLVHRLRQKIEPNPTEPQYLVTIPSVGYMLQPN 224


>gi|325295161|ref|YP_004281675.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065609|gb|ADY73616.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 217

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E  R +R    +VP++ ++        +   DSG DD V KP   +E+LAR+ A+ RR 
Sbjct: 63  VETCRFLRERKVKVPILMLTALSEEDDKVIGLDSGADDYVTKPFGVKELLARIRALLRR- 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                 + T    +  +G   E++G+   L ++E  +L+ L  N+G  V+K  +   ++ 
Sbjct: 122 --KETISGTQSKEIVFNGNFVEIEGKKIELTKKEIEVLKILFENKGTPVSKETLLLKVWE 179

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             D  V +  ++ HI  LR KL
Sbjct: 180 SRD--VSKRTIDVHIKHLRDKL 199


>gi|303249046|ref|ZP_07335290.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302489569|gb|EFL49510.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 223

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 8/179 (4%)

Query: 46  VSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           V+ I+  L G  G KV+E  R  R     P+I +S   S++  +   ++G DD ++KP  
Sbjct: 47  VAVIDVMLPGLDGLKVIEELR--RRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFS 104

Query: 105 HREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
             E+LARV A+ RR    +   R   G + +    R+         L  RE  +LEY M 
Sbjct: 105 FSELLARVQALIRRSSSVSEPTRLTVGELSMNLLTREVHRGETAVQLQPREFALLEYFMR 164

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N GK ++KT I   ++   FD   + N+V+  + +LR K+        + + R +GY +
Sbjct: 165 NPGKVLSKTMIMEHVWDYHFDP--QTNLVDVLVCRLRNKIDRDWDRKMLHTLRGVGYVL 221


>gi|241759488|ref|ZP_04757592.1| DNA-binding response regulator [Neisseria flavescens SK114]
 gi|241320270|gb|EER56603.1| DNA-binding response regulator [Neisseria flavescens SK114]
          Length = 225

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 14/167 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I      VP++ ++    L + L+  D G DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LAQIRNGGCTVPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRR---H 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +A+T    G I +       EV G  +   L  +E  +L+ L+   G  ++++ +   
Sbjct: 120 GGQAQTLLSNGIITLNPSTHQAEVVGQEQAIMLSNKEFAVLQALLLRPGMILSRSDLEDK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IYG + E VE N V+  I  LRK    KLG + + + R +G+ +  N
Sbjct: 180 IYG-WGEEVESNAVDFLIHALRK----KLGKEAIQNVRGVGWLVAQN 221


>gi|121594708|ref|YP_986604.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120606788|gb|ABM42528.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 235

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 14/172 (8%)

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+  L+L R  RA S   Q+P++ ++        +   D+G DD + KP   +E+LAR+ 
Sbjct: 60  GQSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 114 AIYRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           A+ RR    +VS++    G + + +       QG+   +   E ++L YLM +  +  ++
Sbjct: 120 AVLRRRAPEQVSDS-VSIGELVLDAATHRVSYQGQQLKVGPTEFKLLHYLMKHPERVHSR 178

Query: 171 TQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   I+G  +F   +EE  V+ H+ +LR+ L   +G   V++ R  GY +
Sbjct: 179 AQLLDKIWGDHVF---IEERTVDVHVKRLREAL--GVGGAMVETVRGAGYRL 225


>gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 233

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 20/199 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIR 68
           L K+GY  +  +DG +     ++E  E    S + ++  ++  L GK G +VL   R +R
Sbjct: 22  LEKEGYQVVVANDGDT-----AIELAE----SEKPNLILLDIMLPGKDGNEVL---REVR 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
               +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR +V +   +T
Sbjct: 70  KTQNIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANLRREQVPDETVKT 129

Query: 129 ------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + V  D      +GE   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 130 TKDIVIGDLIVHPDAYVVSRKGEEIELTHREFELLHYLARHIGQVMTREHLLETVWG-YD 188

Query: 183 EAVEENVVESHISKLRKKL 201
              +   V+  + +LR+K+
Sbjct: 189 YFGDVRTVDVTVRRLREKI 207


>gi|330889138|gb|EGH21799.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 220

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 24/218 (11%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL  +GY   + +DG+S    ++L  E +        +  ++ F         +L R +R
Sbjct: 19  ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           A    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR   S  RA 
Sbjct: 68  AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   I +    +    QG   P+   E ++L  LM   GK V + ++   +YG + +
Sbjct: 125 PLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSHTLYG-WQD 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE N +E  I  LRKKL  +L    + + R +GY ++
Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217


>gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 232

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 6/189 (3%)

Query: 38  LQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           L    + D+  ++  L G  G +V  + R  RA   +P+I ++        +   + G D
Sbjct: 42  LVQKEQPDLVILDIMLPGIDGLEVCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGAD 101

Query: 97  DVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           D + KP   RE++ARV A+ RR   ++ S+   + GPI +  +  +  V+GE      +E
Sbjct: 102 DYITKPFSPRELVARVKAVLRRADKVERSDKIIKAGPITIDVERHEVFVEGERKDFTPKE 161

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDS 212
             +L  L +N GK  ++  +   I+G +D   +   V+ HI  LR+K+ RN      +++
Sbjct: 162 FELLRLLASNPGKVFSREYLLENIWG-YDYLGDTRTVDVHIRHLRQKIERNSDTPQFIET 220

Query: 213 KRFLGYSID 221
            R +GY  +
Sbjct: 221 VRGIGYKFN 229


>gi|291617790|ref|YP_003520532.1| BasR [Pantoea ananatis LMG 20103]
 gi|291152820|gb|ADD77404.1| BasR [Pantoea ananatis LMG 20103]
          Length = 228

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+ R     P++ ++   +++  +   D+G DD + KP    E+LAR+ A+ RR +  
Sbjct: 63  LQRLRRQKQMQPVLILTARDTIEERIAGLDAGADDYLIKPFALDELLARIRALIRRHVNQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++R E G + +    R   +   +  L  +E  IL  LM   G  V +  ++  IY  F
Sbjct: 123 GDSRLEVGNLSLDMTHRQIHLDDVLLDLTPKEFSILSRLMLKAGHPVHRELLYQDIYN-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     N +E HI      LR+K+G   + + R  GY++
Sbjct: 182 DNEPSTNTLEVHI----HNLRDKVGKATIRTVRGFGYAL 216


>gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium HTCC2083]
 gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 227

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +++ +    +P+I +S        +   ++G DD V KP   +E++ARV A  R
Sbjct: 63  IEVCRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLR 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R + +   A+     +  +G   +V   G    L   E R+L  LM   G+   + Q+  
Sbjct: 123 RTRPAALGAQLDFEDIVLNGETHKVTRAGVELKLGPTEYRLLSQLMEKPGRVWPREQLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++G  D  V+   V+ H+ +LRK L  + G DP+ + R  GY+
Sbjct: 183 HVWG-RDAFVDTRTVDVHVGRLRKALTAEGGSDPIRTIRGTGYA 225


>gi|207723568|ref|YP_002253967.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207743074|ref|YP_002259466.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|206588769|emb|CAQ35732.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206594471|emb|CAQ61398.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 232

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPI 131
           +P++ ++ + +++  +   + G DD + KP    E+ AR  A+ RR       + + GP+
Sbjct: 73  LPVMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSHGHERTQLQCGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
                     + GE   L  RER +LE L+   G+ V K  I   I+G+ +E+V  + +E
Sbjct: 133 HYDGTSGAFALHGEPLALTGRERAVLEVLVLRDGRAVNKAAISEKIFGI-NESVNADAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LRKKL
Sbjct: 192 IYVHRLRKKL 201


>gi|161522889|ref|YP_001585818.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348280|ref|YP_001941476.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|160346442|gb|ABX19526.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189338418|dbj|BAG47486.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 221

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 23/228 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ---SSARE-DVSAIEAFLIGKG 57
            +L++D  L+ DG  A     G+  +GF      +W++   ++ RE    A  A ++  G
Sbjct: 3   ILLVEDDILLGDGIRA-----GLRQQGFQV----DWVRDGDAAQRELRAHAHAAAILDLG 53

Query: 58  EKVLE----LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
             +++    L RI R    +P++ ++   ++   +   D G DD V KP+   E+ AR+ 
Sbjct: 54  LPLVDGMDVLQRIRRDGMALPILILTARDAVPDRIRALDVGADDYVIKPVDLYELGARLR 113

Query: 114 AIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR       R +   + +    R     G    L  RE  +L  LM N G+ +++ Q
Sbjct: 114 ALVRRAHGRPTERLQAQDVELEPASRTARRAGVAVALSTREFDLLHILMLNAGRVLSREQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   +Y  + + VE N VE H+ +LR     KLG + + + R +GY +
Sbjct: 174 IELYLYS-WGQEVESNAVEVHVHRLRA----KLGSELIRTVRGVGYVL 216


>gi|309803189|ref|ZP_07697286.1| response regulator ArlR [Lactobacillus iners LactinV 11V1-d]
 gi|309806124|ref|ZP_07700143.1| response regulator ArlR [Lactobacillus iners LactinV 03V1-b]
 gi|308164697|gb|EFO66947.1| response regulator ArlR [Lactobacillus iners LactinV 11V1-d]
 gi|308167479|gb|EFO69639.1| response regulator ArlR [Lactobacillus iners LactinV 03V1-b]
          Length = 229

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 11/151 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR++
Sbjct: 49  LEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQ 108

Query: 121 VSNNRA--ETGPIRV--FSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +    +    G  RV  F+D       R      +   L +RE  +L  L+ ++   V +
Sbjct: 109 IEKRASGEAAGVQRVIRFNDLTIETANRIVHRGDKTVDLTKREYNLLMTLIEHKNNVVTR 168

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            Q+   I+G  D  +E NVVE ++  LR K+
Sbjct: 169 EQLLKKIWG-SDSKIETNVVEVYVRYLRNKI 198


>gi|299769446|ref|YP_003731472.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter sp. DR1]
 gi|298699534|gb|ADI90099.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter sp. DR1]
          Length = 223

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 78/158 (49%), Gaps = 4/158 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
           +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + +  
Sbjct: 64  QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           N      +++          G +  L + E  +L YL+ N+ + V + QI S ++ + FD
Sbjct: 124 NELSISDLKMDLVAHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNINFD 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N ++  + +LR K+        + + R LGY I
Sbjct: 184 --TDTNFIDVAVRRLRSKIDEGYDLKLIHTIRGLGYKI 219


>gi|227114743|ref|ZP_03828399.1| DNA-binding transcriptional activator KdpE [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 226

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 16/159 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I +S     Q  +D  D+G DD + KP    E+LAR+    RR   SN 
Sbjct: 66  RDLRQWSSLPVIVLSARTDEQDKIDALDAGADDYLTKPFGIGELLARLRVALRR--HSNT 123

Query: 125 RAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ET     G I V    R     G+   L   E R+L  L+AN GK + + Q+ + ++G
Sbjct: 124 QQETPLVSFGNITVDLLNRQVNRDGQELHLTPIEFRLLATLLANPGKVLTQRQLLTQVWG 183

Query: 180 LFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216
                   N VE SH  ++    LR KL  DP   +  L
Sbjct: 184 -------PNAVEHSHYLRIYMGHLRQKLESDPARPRHLL 215


>gi|192361393|ref|YP_001980674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Cellvibrio japonicus Ueda107]
 gi|190687558|gb|ACE85236.1| phosphate regulon transcriptional regulatory protein PhoB
           [Cellvibrio japonicus Ueda107]
          Length = 232

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 16/226 (7%)

Query: 2   FVLIDDRALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD + ++D   +AL   D   +E  N+ +    L    + D+  ++  +   G   
Sbjct: 6   ILIVDDESAIRDMLRVALEMADYQCIEAGNAQDAHS-LIIDEKPDLILLDWMM--PGTSG 62

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R ++     + +P+I ++        +   + G DD + KP   RE++AR+ A+ R
Sbjct: 63  IELARRLKRDEVTANLPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R   ++    + PI V     DP      +  +   +   E R+LE+ + ++ +   ++Q
Sbjct: 123 R---ADPHVNSAPIIVQGLCLDPASHRVTINNQSVDMGPTEYRLLEFFLTHQERAYTRSQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   ++G  +  VEE  V+ HI +LRK L      D V + R  GY
Sbjct: 180 LLDHVWG-GNVYVEERTVDVHIRRLRKALAIDGHEDLVQTVRGTGY 224


>gi|82703349|ref|YP_412915.1| two component transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411414|gb|ABB75523.1| two component transcriptional regulator, winged helix family
           [Nitrosospira multiformis ATCC 25196]
          Length = 234

 Score = 58.2 bits (139), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 7/152 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           +P+I ++        +   +SG DD + KP   RE+LAR+ A+ RR   + +++  E G 
Sbjct: 77  IPIIMLTARADESDKVTGLESGADDYITKPFSPRELLARIKAVLRRRAPEAADDVVEIGG 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEEN 188
           +R+ S             L   E R+L YLM +  +  +++Q+   ++G  +F   VE+ 
Sbjct: 137 LRLDSATHRVTANEIEVVLGPTEFRLLHYLMTHSERVHSRSQLLDQVWGDHVF---VEDR 193

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V+ HI +LRK L N      V + R  GY +
Sbjct: 194 TVDVHIRRLRKALENVDKDGLVQTVRGSGYRL 225


>gi|317133437|ref|YP_004092751.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315471416|gb|ADU28020.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 226

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 23/168 (13%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P++ +S        L  F+ GVDD V KP   +E++AR+     R+ +S NR 
Sbjct: 67  IRKTKDIPVLMLSARGEEYDKLFGFEVGVDDYVVKPFSPKEVMARL-----RVIISRNRQ 121

Query: 127 ET---GPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                GP++ F          GR   V G+   L  +E  +L YL+ NR   +++ Q+  
Sbjct: 122 HLQNGGPMQTFRHDGLVVDLAGRSVMVDGQKAELTPKETDLLFYLVQNRNLALSRAQLLQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSID 221
            ++G +D   ++  V++HI    K LR+ LG   D + + R +GY  +
Sbjct: 182 DVWG-YDFYGDDRTVDTHI----KMLRSSLGKYKDAIVTLRGVGYKFE 224


>gi|261407193|ref|YP_003243434.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283656|gb|ACX65627.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 227

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL ++++    +P+I ++        +   D G DD + KP   RE+L+R+ ++ RR + 
Sbjct: 63  ELCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYQ- 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175
               ++   I    D R   ++G+VF       L   E R+L     + G+ +++ Q+  
Sbjct: 122 --KPSQVNSIMDIDDIRINTLEGKVFKNGAEIALTALEYRLLLIFGNHIGQVLSRNQLLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            I+ +  + V +N +  +I +LR+KL +  G    + + R LGY +
Sbjct: 180 QIWDVAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYKV 225


>gi|302874388|ref|YP_003843021.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307691010|ref|ZP_07633456.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577245|gb|ADL51257.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 234

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 13/171 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL + IR  S +P++ +S        +   D G DD + KP +  EI+ARV +  RR   
Sbjct: 63  ELTKKIREISNMPILILSAKNLDSDKILGLDLGADDYLTKPFNPLEIIARVKSSIRRCYN 122

Query: 119 LKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           LK     +E       G + + ++       G    +   E RIL  LM + G+   K Q
Sbjct: 123 LKADEVASEKENILTVGELSLNTESFMLTKGGNEISITPTEYRILALLMKSPGRVYTKMQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           I+  I G + E+ +EN +  HISKLR K+ +    +P  + + R LGY I+
Sbjct: 183 IYELIKGEYFES-DENTIMVHISKLRDKIEDD-SKNPLYIKTIRGLGYKIE 231


>gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 227

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP++ ++    ++  ++  D+G DD + KP    E+LAR+ A  RR+ 
Sbjct: 66  LEVARRIRKTSNVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRV- 124

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                A TG IRV       +GR+    G       +E  +LE L  + GK  ++ +I  
Sbjct: 125 ---TPAITGEIRVSDLIINLEGREVYRSGRRIEFSNKEFELLELLAKSPGKVFSRFEIEE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NVV+ +I  LRKKL        + + R +GY +
Sbjct: 182 KVWPGYQGG--SNVVDVYIGYLRKKLEGAGERRLIHTVRGVGYVL 224


>gi|153952997|ref|YP_001393762.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219853654|ref|YP_002470776.1| hypothetical protein CKR_0311 [Clostridium kluyveri NBRC 12016]
 gi|146345878|gb|EDK32414.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219567378|dbj|BAH05362.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 224

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  SQ P+I +S   S    +   + G DD + KP     ++A+++A+ RR       A
Sbjct: 67  IREMSQCPIIFLSSRDSNMDIIMAVNMGADDYITKPFSMDVLIAKISALIRRTYSYGEGA 126

Query: 127 E-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G I   +       + E+  L + E +I+ +LM N GK +++ +I   ++   
Sbjct: 127 SELLECNGAILNLTYKTLSYNEREI-ELTKNEFKIMLFLMKNSGKTISRERIMRTLWD-D 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  + +N +  +I++LR +LR+   +D + +K+  GY I
Sbjct: 185 DNFISDNTLTVNINRLRMRLRDIGLYDFIKTKKGRGYEI 223


>gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
 gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
          Length = 222

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 22/209 (10%)

Query: 3   VLIDD----RALVK-----DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL 53
           +++DD    RALVK     +GY+     DG           +E L+         I   +
Sbjct: 5   LIVDDDTHMRALVKTYAEIEGYLCFEAADG-----------KETLEKLTNHSFDLILLDV 53

Query: 54  IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           +  G+   +    IR     P+I I+        L  F+ G DD + KP   +E++AR+ 
Sbjct: 54  MMPGKDGFQTLSEIRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIK 113

Query: 114 AIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ +R  +    +   G + V        + G   PL  +E  +L YL  N    +++  
Sbjct: 114 AVLKRSSQFQFEKIVFGDLEVNVFSHTVTINGNPLPLTPKEFDLLVYLTKNNHIALSRES 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I   ++G FD   +   V++HI  LR++L
Sbjct: 174 ILEGVWG-FDYFGDTRTVDTHIKSLRERL 201


>gi|257126116|ref|YP_003164230.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050055|gb|ACV39239.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 227

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + RI    ++VP++ ++   ++   +   D G DD + KP    E++AR+  + RR    
Sbjct: 63  IKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNSGN 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               + V+N + +     VF D       G +  L  RE  ILEYL+ N+GK + + +I 
Sbjct: 123 ADNVITVANLKVDLDAKTVFRD-------GVLIKLSGREYSILEYLIRNKGKILPRERIE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+  ++     NV++ +I  LRKK+ +      + + R LGY +
Sbjct: 176 DHIWN-YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVL 220


>gi|291286929|ref|YP_003503745.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884089|gb|ADD67789.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 236

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +IIR+   +P++ +S   ++   +   + G DD + KP  + E++ARV AI RR + 
Sbjct: 67  QICKIIRSELDIPIMILSARDNVSDKVVCLEYGADDYMTKPFENIELIARVKAILRRSEK 126

Query: 122 SNNRAE--TGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +N   E  TG + +F         R   ++ E   L  +E  IL Y +   G  +++  I
Sbjct: 127 NNTSQEAGTGDVLIFHHMTIDKASRQVFIKDEKVALTPKEYEILLYFVGKTGHVLSRDDI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + I+G          ++ HI  LR+K+  N    D V +   +GY I
Sbjct: 187 VNDIWGKNSIYSWSRSLDVHIKNLRQKIEINPKNPDIVKTVSGVGYKI 234


>gi|167824076|ref|ZP_02455547.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167845607|ref|ZP_02471115.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167894158|ref|ZP_02481560.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
          Length = 241

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124
           + +S +P++ +++       +   ++G DD V KP   +E +ARV A+YRR    +  + 
Sbjct: 72  KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 131

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E GP R+ +  +      E   L  +E  I+E L  N G+ V++ ++   ++G   + 
Sbjct: 132 LIEIGPYRIQTSEKVVYFHREAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 191

Query: 185 VEENVVESHISKLRKKL 201
                +++HI ++R+KL
Sbjct: 192 AAFRTLDTHIYRIRRKL 208


>gi|118476337|ref|YP_893488.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415562|gb|ABK83981.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYQGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220


>gi|45861562|gb|AAS78632.1| RssB [Serratia marcescens]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 6/151 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127
           A   +P+I ++    +++ ++  DSG DD + KP    E+++RV A+ RR+   ++    
Sbjct: 69  AGQNIPIIILTARDRIESLVNSLDSGADDFLAKPFALPELISRVKAVNRRMAGFASQTWS 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +        +  E+  L ++E  +L  LM   G  V K  +   ++G  D +VE 
Sbjct: 129 LGTLYLDPVNHQVTLDNELLMLSKKEYHLLHELMRCAGTVVRKAVLEQRLFGHGD-SVES 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           N +E H+  LR+    K+G + + + R +GY
Sbjct: 188 NSLEVHMHNLRR----KIGKERIITVRGIGY 214


>gi|78067418|ref|YP_370187.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77968163|gb|ABB09543.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 64  IDVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 122

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 123 --QAGRSESLIRHGALTLDPASHQVTLDGVPVALSAREFALLEALLARPGAVLSKSQLEE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 181 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 220


>gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
 gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
          Length = 237

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 6/153 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAET 128
           ++P++ ++   S+   +     G DD V KP    E++AR+ A+ RR +     N+    
Sbjct: 81  RLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTRGDIDGNSALRF 140

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             + +  D  +    G V      E ++L YLM N  + ++K QI   ++  +D   E  
Sbjct: 141 EDLELDEDSHEVRRAGRVIETSPTEFKLLRYLMLNPNRVLSKAQILDHVWE-YDFRGESG 199

Query: 189 VVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +VES+IS LR+K+  + G  P + +KR +GY +
Sbjct: 200 IVESYISYLRRKIDTE-GLPPLIHTKRGVGYVL 231


>gi|254248194|ref|ZP_04941514.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124874695|gb|EAY64685.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 10/154 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
            P++ +S    +   ++   +G DD + KP    E+ AR+  + RR +    R ET    
Sbjct: 74  TPVLVMSAMSGVDQRIEGLRAGGDDYLVKPFSLEEMCARIDVLIRR-RPRGTRVETVLRA 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187
           G + +    R   +      L   E R+LE++M N G+ + +T IF A++G  FD     
Sbjct: 133 GELALDLVRRRATLGARELALLPTESRVLEFMMRNAGRVLTRTMIFEAVWGCRFDPGT-- 190

Query: 188 NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           N+++ HI +LRKK+ N+ G  P + + R  GY +
Sbjct: 191 NLIDVHIGRLRKKV-NRPGAAPLIRTIRGSGYML 223


>gi|150389321|ref|YP_001319370.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949183|gb|ABR47711.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 2/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L R +R H  +PL+ ++        +  F  G DD + KP    E++ RV A+ +R + 
Sbjct: 62  QLCRELREHYDLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALLKRYQI 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++     G + +        V  E F LP +E  +L  + +   K  ++ Q+   I+G 
Sbjct: 122 ITSQTVRIGELVMNQKNYKVTVGSESFTLPLKEFELLFKMASYPEKTFSREQLIEDIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D A  E  ++ HI++LR++   +     + + R LGY ++
Sbjct: 181 YDFAGNERTLDVHINRLRQRFPEENHSFKIRTIRGLGYRLE 221


>gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 17/174 (9%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + IR  +S +P++ ++        +   + G DD + KP   RE++ARV AI RR+
Sbjct: 63  LEVCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAILRRM 122

Query: 120 KV--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +           N    G + + ++G +   +G+   L  +E  +L +L ++RGK +++ 
Sbjct: 123 EALRDQGIPGDRNCLRVGELEIDTEGYEVRKKGDPVDLTPKEFELLIHLASHRGKVLSRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSID 221
           Q+ +A++  +D   +  +V+ H+S LR+K+    RN +    V   R +GY  +
Sbjct: 183 QLLNAVWD-YDYIGDTRIVDVHVSHLREKVEEDSRNPIYIKTV---RGIGYKFE 232


>gi|329930122|ref|ZP_08283741.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
 gi|328935381|gb|EGG31856.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
          Length = 242

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL ++++    +P+I ++        +   D G DD + KP   RE+L+R+ ++ RR + 
Sbjct: 78  ELCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYQ- 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175
               ++   I    D R   ++G+VF       L   E R+L     + G+ +++ Q+  
Sbjct: 137 --KPSQVNSIMDIDDIRINTLEGKVFKNGAEIALTALEYRLLLIFGNHIGQVLSRNQLLE 194

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            I+ +  + V +N +  +I +LR+KL +  G    + + R LGY +
Sbjct: 195 QIWDVAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYKV 240


>gi|283785895|ref|YP_003365760.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282949349|emb|CBG88960.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 240

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 6/153 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K      +     P+ +  +GR     +G++  L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQQMDAESPL-IVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 237

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 85/164 (51%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++        +   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 68  EVCREIRKISDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRRARK 127

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+   +    G + +  + R   V G+   L  +E  +L  L  + GK   + ++   ++
Sbjct: 128 SSTPGKQIVLGNVVIEPEARTVTVGGKTLALTPKEFDLLLTLARSPGKVFRREELLDLVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
           G +D   +   V++H+++LR+KL N+ G  P+ +  + +GY ++
Sbjct: 188 G-YDFYGDSRTVDTHVARLREKL-NQAGAPPLIATVWGVGYKLE 229


>gi|228910935|ref|ZP_04074744.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228848886|gb|EEM93731.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 222

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 59  EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 117

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  GE   L +RE  +L +L+ N+   +++  + + 
Sbjct: 118 CNQQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 178 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 220


>gi|218509607|ref|ZP_03507485.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli Brasil 5]
          Length = 227

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +    +G DD V KP    E++ARV A+ R
Sbjct: 62  IELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLR 121

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  V ++  + G I +  +      +     L   E R+LE+LM++ G+  +++Q+  
Sbjct: 122 RARPEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|254447845|ref|ZP_05061310.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium HTCC5015]
 gi|198262625|gb|EDY86905.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium HTCC5015]
          Length = 233

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 17/172 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +R+HS  P+I ++        +   + G DD + KP + RE+ AR+ A+ RR +
Sbjct: 63  LDVLQSLRSHSDTPIIMLTGRGDDIDRIIGLEMGADDYMGKPCNPRELSARLRAVLRRAQ 122

Query: 121 V----SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    S   AET     I V    RD   +GE   L   E  +LE LM + G+ V+K  +
Sbjct: 123 MTADSSQQNAETLQLHGIEVNRGQRDARFEGESLGLTSAEFSVLELLMRSSGEIVSKETL 182

Query: 174 FSAIYGL----FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              +       +D +     ++ H+S++R+KL   LG  D + + R  GY +
Sbjct: 183 TEKVLQRPLMPYDRS-----IDVHVSRVRQKLSKYLGDQDIIKTARGRGYMM 229


>gi|114763733|ref|ZP_01443127.1| transcriptional regulator, winged helix family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114543734|gb|EAU46747.1| transcriptional regulator, winged helix family protein [Roseovarius
           sp. HTCC2601]
          Length = 222

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 35/234 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------G 55
            ++++D A++ DG        G+ L GF+    E    +     +   EA ++      G
Sbjct: 3   ILIVEDDAVLGDGLSV-----GLRLSGFSPELVETCADARHAIAMEGFEAVVLDLMLPDG 57

Query: 56  KGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
            G   LEL R +R + S +P++ ++    L   +   D+G DD + KP    E+ AR+ A
Sbjct: 58  SG---LELLRELRQSGSDMPVLMLTARDGLDDRVTGLDAGADDYLGKPFELPELSARLRA 114

Query: 115 IYRRLKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           + RR   +  RAE               S  R P    E     RRE  +L  LM   G 
Sbjct: 115 LTRR---AQGRAENLLHWNGLALDTARMSGRRGP----EEIAFSRREYTVLAALMERPGS 167

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++K  +   +YG + E +E N VE H+  LR KL +  GF  + + R  GY +
Sbjct: 168 ILSKATLEERLYG-WQEDIESNTVEVHVHHLRAKLGS--GF--IQTVRGAGYRL 216


>gi|99078311|ref|YP_611569.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035449|gb|ABF62307.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 230

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 18/198 (9%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK-VLELPRII 67
           A+ K G+   F  DG++              ++ R D   +    IG  EK  LE+ R I
Sbjct: 21  AIEKAGFETCFASDGLAA------------IAAQRRDAPDLVVLDIGLPEKDGLEVCRDI 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S VP++ ++        +   + G DD + KP   RE++AR+ AI +R   S  +  
Sbjct: 69  RKSSDVPILFLTARDEEIDRIVGLELGADDYLTKPFSPRELVARIKAILKRSTPSITQLP 128

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           T    G + + ++       G    L   E R+L+ LM      + + Q+  A+YG F+ 
Sbjct: 129 TALTHGALELDAERHQCAFAGVPVSLTGSEFRLLKVLMTRPDLVLTRAQLVEALYG-FNI 187

Query: 184 AVEENVVESHISKLRKKL 201
            V +  ++SHI  +R K+
Sbjct: 188 HVSDRTIDSHIRNIRAKM 205


>gi|186683925|ref|YP_001867121.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466377|gb|ACC82178.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 83/157 (52%), Gaps = 4/157 (2%)

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +R+HS  +P++ ++   ++   +   D+G DD V KP+  +E+ AR+ A+ RR  VS+  
Sbjct: 66  LRSHSYSMPVLMLTARDTVSDKITGLDAGADDYVVKPVDLQELFARIRALLRRGNVSSPP 125

Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E G + +     +      +  L  +E  ILE L+ N  + ++++ I   I+ L +  
Sbjct: 126 ILEWGNLHLNPSTYEVSYGKNMLHLTPKEYGILELLLRNGRRVLSRSVIIEHIWSL-ESP 184

Query: 185 VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            EE+ V+ H+  LR+KL+    F D +++   +GY +
Sbjct: 185 PEEHAVKVHLRSLRQKLKAAGAFEDFIETVHGIGYRL 221


>gi|331697739|ref|YP_004333978.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326952428|gb|AEA26125.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 247

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 10/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R IR  S VP+I +S    +   +    SG DD + KP    E++ARV A+ RR  
Sbjct: 58  VDVCRAIRQVSDVPVIVVSARGEVDDRILGLHSGADDYIVKPYDIGELVARVHAVCRRRG 117

Query: 121 VSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +  A  G       +RV  D     V G    L R+E ++L  L A RG    +++I 
Sbjct: 118 TPSGAAAPGGEVAVDGVRVDLDRHIVTVDGAEVSLTRKEFQVLALLAAARGTVCTRSRIV 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G          ++ H++ LR KL      D V + R +GY +
Sbjct: 178 AEVWGRSWPGANRT-LDVHVATLRTKLGRA---DLVQTVRGVGYRL 219


>gi|257866986|ref|ZP_05646639.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873320|ref|ZP_05652973.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877062|ref|ZP_05656715.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257801042|gb|EEV29972.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257807484|gb|EEV36306.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811228|gb|EEV40048.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 13/162 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS   +    +   + G DD V KP     ++A++ A+ RR   S N  
Sbjct: 67  IREASKVPIIFISSRNTNMDMIMAMNMGADDFVTKPFEIDVLIAKINALLRR---SYNYV 123

Query: 127 ETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E+    +  +G           + GE   L + E R+L  LM N GK +++ ++  A++ 
Sbjct: 124 ESSSETLVHNGLTLNIDNSSMYINGESIDLSKNEYRLLYILMKNHGKILSREKLLRALWD 183

Query: 180 LFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  V++N +  +I++LR+K+        +++K   GY +
Sbjct: 184 --DERFVDDNTLTVNINRLRRKIEQAGMNGYIETKVGQGYIV 223


>gi|227873308|ref|ZP_03991572.1| response regulator [Oribacterium sinus F0268]
 gi|227840845|gb|EEJ51211.1| response regulator [Oribacterium sinus F0268]
          Length = 237

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 15/211 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DD+ +V+   I L G+    ++ F+  +  + L+   +E+V  I   ++  G   
Sbjct: 4   ILVCDDDKQIVEAISIYLTGEGYQVIKAFDGYDVLKILE---KENVDLIILDVMMPGLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +     IR  S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 61  IRTTLKIREKSSIPIIILSAKGEDTDKILGLNIGADDYITKPFNPLEMVARVKSQLRRYT 120

Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              N  E          G + +  D ++  V GE+  L   E  IL  L+ N GK  +  
Sbjct: 121 QLGNMNEQSKGEAIYSCGGLVINDDTKEVSVDGELVKLTPIEYNILLLLVRNAGKVFSID 180

Query: 172 QIFSAIYGLFDEAV-EENVVESHISKLRKKL 201
           +I+++I+   +EA+  +N V  HI  +R+K+
Sbjct: 181 EIYTSIWN--EEAIGADNTVAVHIRHIREKI 209


>gi|226322770|ref|ZP_03798288.1| hypothetical protein COPCOM_00542 [Coprococcus comes ATCC 27758]
 gi|225208751|gb|EEG91105.1| hypothetical protein COPCOM_00542 [Coprococcus comes ATCC 27758]
          Length = 223

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I +S        +   + G D+ + KP     + A+V A+ RR   L+ + 
Sbjct: 67  IRKLSNVPIIFLSSMNDNMNIVMAMNMGGDEFIEKPFDLNVVTAKVQAVLRRAYALQGTA 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E G + +        + G+   L + E +I +    + GK V +  I + ++   DE
Sbjct: 127 NIIEHGEMLLNLGDASLTIAGQKIELTKNEFKICQMFFESAGKFVTRDAIMTRLWE-SDE 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      D + +K+ +GY +
Sbjct: 186 FIDDNTLTVNVARLRKKLEEAGMHDVIRTKKGIGYML 222


>gi|215919141|ref|NP_820222.2| transcriptional regulatory protein [Coxiella burnetii RSA 493]
 gi|206584025|gb|AAO90736.2| transcriptional regulatory protein [Coxiella burnetii RSA 493]
          Length = 232

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 17/226 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + DG  A     G +++     +    + SS  E    I   L       L+
Sbjct: 13  LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 72

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR  +   P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 73  VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR--- 129

Query: 122 SNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S  RA+  PI    D   DP      ++ +   + RRE  +L+ L+ N G+ +++ Q+  
Sbjct: 130 SKERAK--PIISHGDITLDPASHVVTLKKKEVMVARREFALLQKLLENAGRVISREQLNQ 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +YG + E ++ N +E HI  LRK+   KL    + + R +GY ++
Sbjct: 188 TLYG-WGENIDSNALEVHIHNLRKRFGAKL----IRTIRGVGYMVE 228


>gi|329732143|gb|EGG68497.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU144]
          Length = 221

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127
           S +P+I ++   +L T L  F  G  D + KP +  E++ R+  +  +     ++ N  +
Sbjct: 69  SNIPIIFLTAKDNLDTRLKCFSLGAKDYLPKPFYMEELIIRIKNVLNQSHSQSMTPNIKK 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           T  + ++ D    +V      + ++E  I++ L  N     +K QI+ +I    ++    
Sbjct: 129 TKELIIYYDTYRIDVNNMTIDITKKEFEIIKLLSLNPQYYFSKEQIYDSIN--LNKTGNT 186

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            VV  HI K+RKKL     F+ +D+K  +GY
Sbjct: 187 QVVAEHIRKIRKKLSCYSRFEYIDTKWGVGY 217


>gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 2/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           R +  +P+I ++    L + +  F  G DD + KP    E++ARV A+ RR K+  ++  
Sbjct: 71  RYYENLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALLRRYKIEASQVI 130

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +TG + +  +     + G    +P +E  ++  L    GK  ++ Q+   I+G+ D    
Sbjct: 131 QTGNVLIDKNSYSITLNGVREDIPLKEFELIFKLAGFPGKTFSRNQLIEDIWGV-DFEGN 189

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  ++ H+++LR +   +     + + R LGY ++
Sbjct: 190 ERTLDVHVNRLRDRFPEETAGFKITTVRGLGYRLE 224


>gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 235

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S +P++ ++   ++   ++  D+G DD + KP    E+LARV A  RR+ 
Sbjct: 74  LEVARRIRKTSNIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRV- 132

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                A TG IRV       +GR+    G    L  +E  +LE L  + GK  ++ +I  
Sbjct: 133 ---TPAITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEE 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NVV+ +I  LRKKL  +     + + R +GY +
Sbjct: 190 KVWPGYQGG--SNVVDVYIGYLRKKLEAEGERRLIHTVRGVGYVL 232


>gi|310641009|ref|YP_003945767.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309245959|gb|ADO55526.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus polymyxa SC2]
          Length = 233

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 20/189 (10%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAH-SQVPLIGIS 79
           LEFE +  S  +  +  +E +  G  + VL           EL R IR H + VP+I ++
Sbjct: 22  LEFEGYQVSKEKNGIDGLETYCKGSWDLVLLDIMIPGINGIELLRRIRKHDANVPVILLT 81

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-------RLKVSNNRAETGPIR 132
              S+   ++  D G +D V KP    E+LARV A  R        L+V++     G +R
Sbjct: 82  AKSSIADKVEGLDLGANDYVTKPFVIEELLARVRAALRVGATKDMALQVADQWLSAGDLR 141

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    R+         L  RE  +L +L+ ++ + +++ Q+   ++G+ D   + NVV+ 
Sbjct: 142 LHEGTREVLRGEHNIELTPREFDLLVHLLRHQRQVLSREQLLENVWGI-DYIGDTNVVDV 200

Query: 193 HISKLRKKL 201
           +I  +R K+
Sbjct: 201 YIRYVRNKI 209


>gi|157375856|ref|YP_001474456.1| DNA-binding response regulator [Shewanella sediminis HAW-EB3]
 gi|157318230|gb|ABV37328.1| DNA-binding response regulator [Shewanella sediminis HAW-EB3]
          Length = 233

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 5/166 (3%)

Query: 61  LELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           LE+ + IRA S   +P++ ++   S++  +  F +G DD + KP   +E+  R  A+ RR
Sbjct: 67  LEVCQQIRAKSARHIPILMLTARDSIEDKVSGFTAGADDYLTKPFSLQELEVRCLALSRR 126

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L  +N+    G + V    +     G+V  L     RIL  L     + V+++ +   I
Sbjct: 127 HLLQTNDILTLGCLSVDRKRQQATRDGKVLNLHAMGFRILTELAEAYPQVVSRSVLSQKI 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G  DE  E + + SHI +LR  L     +  + +   +G+++D N
Sbjct: 187 WG--DEPTESDAMRSHIYQLRNVLDKPFDYPILKTVHGIGFTLDIN 230


>gi|24379132|ref|NP_721087.1| putative response regulator SpaR [Streptococcus mutans UA159]
 gi|290580858|ref|YP_003485250.1| putative response regulator [Streptococcus mutans NN2025]
 gi|24377036|gb|AAN58393.1|AE014909_9 putative response regulator SpaR [Streptococcus mutans UA159]
 gi|254997757|dbj|BAH88358.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 3/159 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R IR     P++ ++        +     G DD + KP   +E+LARV A  RR +
Sbjct: 60  LSFCRDIRNLVDCPILFLTAKSQEADVVTGLSYGADDYICKPFGVQELLARVDAHLRRER 119

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ +    PIR     +    +G+   L + E  I E L   RG+  +K Q++  +Y 
Sbjct: 120 REHHASLVLEPIRFDLSAKRVTAKGKKLDLTKSEYEICELLAKRRGQVFSKDQLYDYLYT 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++E      +  HI  +R K R  +G +P+++   +GY
Sbjct: 180 -YEERGTPAAIAEHIKNIRAKFRT-IGLEPIETVWGIGY 216


>gi|54302584|ref|YP_132577.1| putative transcriptional regulator [Photobacterium profundum SS9]
 gi|46916008|emb|CAG22777.1| putative transcriptional regulator [Photobacterium profundum SS9]
          Length = 232

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 8/152 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAET 128
            VP+I ++   S+   +   DSG  D + KP    E+LAR+    R  K   ++ N    
Sbjct: 84  HVPVILLTAMVSVTDKVIGLDSGAKDYLTKPFAEEELLARIRLHLRNGKDDHLAANIITV 143

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G I +  + R+    G++  L R E  +L +L  N G+   + ++   ++G ++      
Sbjct: 144 GQISINMESREVNHDGDIVMLTRTEFELLVFLAKNAGRVFTRDELLDQVWG-YNHYPTTR 202

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V++HI +LR+KL   +G + +++ R +GY +
Sbjct: 203 TVDTHILQLRQKL---MGIE-IETLRGVGYRM 230


>gi|326792833|ref|YP_004310654.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543597|gb|ADZ85456.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 24/219 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L KDGY           E + + + EE L     +D+  +   ++   +  LE+ + IR 
Sbjct: 21  LEKDGY-----------EVYTAYDGEEGLNLIKTKDLDLVLLDIMLPKKDGLEICKEIRQ 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
             +VP+I IS        +   + G DD V KP   RE++ARV A  RR     N+AE  
Sbjct: 70  TKEVPIIIISAKADEIDKVLALELGADDYVTKPFGMREVMARVKARLRRKMTEGNKAEAN 129

Query: 130 PIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              +  D    +++        E   L  RE  +L++L   +G+  ++ ++   ++G ++
Sbjct: 130 EDNLVEDNLCMDLKKYEVSKNNEAIDLTLREFELLKFLWQAKGQVFSREELLEKVWG-YE 188

Query: 183 EAVEENVVESHISKLRKKLRN---KLGFDPVDSKRFLGY 218
              +   V+  I +LR+K+ +   K  +  V +KR +GY
Sbjct: 189 YYGDVRTVDVTIRRLREKIEDDASKAAY--VLTKRGVGY 225


>gi|295106159|emb|CBL03702.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 250

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 15/212 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSA----REDVSAIEAFLIG-K 56
           ++++D A +        G+ G V  + F+  E    L+++A    R DV   +  L G  
Sbjct: 18  LIVEDDAHIGGIVADCLGNAGYVCTQAFSGTEARLVLEAAAARGERFDVVVCDLMLPGLP 77

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE ++ L R   AH+  P++  S   S    ++    G DD + KP    E+LAR+    
Sbjct: 78  GEDIVRLIRTADAHT--PIVVTSARTSATDKVNLLKLGADDYLAKPFDLDELLARIEVQL 135

Query: 117 R---RLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R   R   S    +    G   +    R   V G   PL R E  I+E L A+  K   K
Sbjct: 136 RHRGRALASQPGGDVLCVGAWAIDRAARTLTVDGAEVPLTRTEFNIVELLAAHPRKVYTK 195

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            ++F   +G    A E++ V  H+S +R KL+
Sbjct: 196 QELFELAWG-EPYAAEDSTVSVHVSNIRAKLK 226


>gi|259500533|ref|ZP_05743435.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|302191223|ref|ZP_07267477.1| DNA-binding response regulator [Lactobacillus iners AB-1]
 gi|309805234|ref|ZP_07699286.1| response regulator ArlR [Lactobacillus iners LactinV 09V1-c]
 gi|309808122|ref|ZP_07702036.1| response regulator ArlR [Lactobacillus iners LactinV 01V1-a]
 gi|309810189|ref|ZP_07704034.1| response regulator ArlR [Lactobacillus iners SPIN 2503V10-D]
 gi|312871771|ref|ZP_07731859.1| response regulator ArlR [Lactobacillus iners LEAF 3008A-a]
 gi|312872980|ref|ZP_07733040.1| response regulator ArlR [Lactobacillus iners LEAF 2062A-h1]
 gi|312874189|ref|ZP_07734223.1| response regulator ArlR [Lactobacillus iners LEAF 2052A-d]
 gi|312875576|ref|ZP_07735577.1| response regulator ArlR [Lactobacillus iners LEAF 2053A-b]
 gi|315653632|ref|ZP_07906552.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|325912125|ref|ZP_08174523.1| response regulator ArlR [Lactobacillus iners UPII 143-D]
 gi|325912567|ref|ZP_08174950.1| response regulator ArlR [Lactobacillus iners UPII 60-B]
 gi|329920102|ref|ZP_08276933.1| response regulator ArlR [Lactobacillus iners SPIN 1401G]
 gi|259167917|gb|EEW52412.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|308165468|gb|EFO67699.1| response regulator ArlR [Lactobacillus iners LactinV 09V1-c]
 gi|308168634|gb|EFO70738.1| response regulator ArlR [Lactobacillus iners LactinV 01V1-a]
 gi|308169461|gb|EFO71509.1| response regulator ArlR [Lactobacillus iners SPIN 2503V10-D]
 gi|311088830|gb|EFQ47273.1| response regulator ArlR [Lactobacillus iners LEAF 2053A-b]
 gi|311090259|gb|EFQ48669.1| response regulator ArlR [Lactobacillus iners LEAF 2052A-d]
 gi|311091502|gb|EFQ49886.1| response regulator ArlR [Lactobacillus iners LEAF 2062A-h1]
 gi|311092713|gb|EFQ51069.1| response regulator ArlR [Lactobacillus iners LEAF 3008A-a]
 gi|315488994|gb|EFU78636.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|325476075|gb|EGC79243.1| response regulator ArlR [Lactobacillus iners UPII 143-D]
 gi|325477988|gb|EGC81117.1| response regulator ArlR [Lactobacillus iners UPII 60-B]
 gi|328936556|gb|EGG33000.1| response regulator ArlR [Lactobacillus iners SPIN 1401G]
          Length = 241

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 11/151 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR++
Sbjct: 61  LEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQ 120

Query: 121 VSNNRA--ETGPIRV--FSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +    +    G  RV  F+D       R      +   L +RE  +L  L+ ++   V +
Sbjct: 121 IEKRASGEAAGVQRVIRFNDLTIETANRIVHRGDKTVDLTKREYNLLMTLIEHKNNVVTR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            Q+   I+G  D  +E NVVE ++  LR K+
Sbjct: 181 EQLLKKIWG-SDSKIETNVVEVYVRYLRNKI 210


>gi|254976474|ref|ZP_05272946.1| DNA-binding response regulator [Clostridium difficile QCD-66c26]
 gi|255093857|ref|ZP_05323335.1| DNA-binding response regulator [Clostridium difficile CIP 107932]
 gi|255315610|ref|ZP_05357193.1| DNA-binding response regulator [Clostridium difficile QCD-76w55]
 gi|255518270|ref|ZP_05385946.1| DNA-binding response regulator [Clostridium difficile QCD-97b34]
 gi|255651389|ref|ZP_05398291.1| DNA-binding response regulator [Clostridium difficile QCD-37x79]
 gi|260684447|ref|YP_003215732.1| hypothetical protein CD196_2714 [Clostridium difficile CD196]
 gi|260688106|ref|YP_003219240.1| hypothetical protein CDR20291_2761 [Clostridium difficile R20291]
 gi|306521216|ref|ZP_07407563.1| hypothetical protein CdifQ_16721 [Clostridium difficile QCD-32g58]
 gi|260210610|emb|CBA65237.1| putative uncharacterized protein [Clostridium difficile CD196]
 gi|260214123|emb|CBE06320.1| putative uncharacterized protein [Clostridium difficile R20291]
          Length = 204

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S +P+I I+   S    L+    G DD + KP +   +LARV  + +R+  S
Sbjct: 47  LCRQIRNCSTIPIIFITARDSAIDELNGLTMGGDDYITKPYNLPLLLARVKNLLKRVDSS 106

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  + +   I +       E Q  V  L R E +I+ YL  N G  V +  +      L+
Sbjct: 107 DKQKIKYREIILNLISATVEYQNAVIELSRTELKIMYYLFQNVGSIVPRIDLVEY---LW 163

Query: 182 DE--AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D    +++N +  +I++LR+KLR     D + +KR +GY I
Sbjct: 164 DNHIHIDDNALSVNITRLREKLRGIGITDLIITKRGMGYRI 204


>gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
 gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
          Length = 234

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 17/142 (11%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR---------LKVSNNRAETGPIRVFSDGRDPE 141
            +SG DD + KP    E++AR+ A+ RR         L+ ++   +    RV  +GRD  
Sbjct: 99  LNSGADDYIAKPFSPTELVARMRAVLRRAAPGLAEELLRFADVVMDLAAHRVRRNGRDVH 158

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +    F       R+L + M + G+  ++ Q+   ++G  D  VE   V+ HI +LRK L
Sbjct: 159 LGPTEF-------RLLRHFMQHPGRVFSREQLLDVVWG-HDVYVEPRTVDVHIRRLRKAL 210

Query: 202 RNKLGFDPVDSKRFLGYSIDWN 223
                 D + + R  GY++D N
Sbjct: 211 NETDDQDLIRTVRSAGYALDQN 232


>gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 227

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 10/144 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S+VP++ ++        +   + G DD V KP   RE++AR+ AI +R + 
Sbjct: 61  EVCRRIRQRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIAKRSRA 120

Query: 122 SNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     T P+   +   DP+     + G+   L  RE+ IL+ L    G+  +K ++   
Sbjct: 121 NG----TVPVNHGALTLDPQAHRCWLNGQEIALTAREQSILQLLTKAPGRLCSKPELIHH 176

Query: 177 IYGLFDEAVEENVVESHISKLRKK 200
           I+G   + V +  ++SH+  LR K
Sbjct: 177 IWGAGSQ-VSDRTLDSHLRNLRGK 199


>gi|27467038|ref|NP_763675.1| response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|27314580|gb|AAO03717.1|AE016744_120 response regulator [Staphylococcus epidermidis ATCC 12228]
          Length = 222

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127
           S +P+I ++   +L T L  F  G  D + KP +  E++ R+  +  +     ++ N  +
Sbjct: 70  SNIPIIFLTAKDNLDTRLKCFSLGAKDYLPKPFYMEELIIRIKNVLNQSHSQSLTPNIKK 129

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           T  + ++ D    +V      + ++E  I++ L  N     +K QI+ +I    ++    
Sbjct: 130 TKELIIYYDTYRIDVNNMTIDITKKEFEIIKLLSLNPQYYFSKEQIYDSIN--LNKTGNT 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            VV  HI K+RKKL     F+ +D+K  +GY
Sbjct: 188 QVVAEHIRKIRKKLSCYSRFEYIDTKWGVGY 218


>gi|300856229|ref|YP_003781213.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300436344|gb|ADK16111.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 2/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
             P++ ++    ++  +   ++G DD ++KP    E+LARV A+ RR  + + +  + G 
Sbjct: 72  HTPILMLTAKAEIEDRILGLNTGADDYLSKPFAMGELLARVHAMTRRKSEFAPSLLKVGN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +  +  +   +     L  +E ++LE LM N    ++       I+G +DE  E NVV
Sbjct: 132 ISLNKENYELSSKKSSLRLGNKEFQMLEMLMNNPKCLISTEHFMERIWG-YDEEAEINVV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +IS LRKKL +      ++S+R   Y+++
Sbjct: 191 LVYISYLRKKLSSLGANVKINSRRDACYTLE 221


>gi|238790688|ref|ZP_04634451.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           frederiksenii ATCC 33641]
 gi|238721236|gb|EEQ12913.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           frederiksenii ATCC 33641]
          Length = 188

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I +S   S +  +   D+G DD ++KP    E+LARV    RR    +  +
Sbjct: 30  LRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGGS 86

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  P+  F+D       R     GE   L   E R+L  L+AN GK + + Q+ + ++G 
Sbjct: 87  QESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLSALLANAGKVITQRQLLNQVWG- 145

Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216
                  N VE H   LR     LR KL  DP   K  L
Sbjct: 146 ------PNYVE-HSHYLRIYMGHLRQKLEIDPTRPKHLL 177


>gi|205824668|dbj|BAG71485.1| response regulator [Lactococcus lactis]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR    +P+I +S   + +  ++    G DD + KP   ++++A+V A  +R + 
Sbjct: 62  EICKRIRREVSIPIIFVSAKDTEEDIVNGLGIGGDDYITKPFSLKQLVAKVEANIKREER 121

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S  R + G I  + + R   V G+  PL  RE  ILE L     K   +  I
Sbjct: 122 NKQAVQDFSEVRRDLGTITFYLEERRVCVNGQTIPLTSREYDILELLSRRTSKVYTREDI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  +Y  + +A+  ++ E +I ++R K       DP+ + R LGY   W+
Sbjct: 182 YDEVYDEYADALFRSISE-YIYQIRNKF-APYNIDPIKTVRGLGYK--WH 227


>gi|169335320|ref|ZP_02862513.1| hypothetical protein ANASTE_01732 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258058|gb|EDS72024.1| hypothetical protein ANASTE_01732 [Anaerofustis stercorihominis DSM
           17244]
          Length = 226

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAE 127
           H+  P++ ++   ++   +   + G DD + KP   +E++AR+ A+ RR    ++     
Sbjct: 70  HNNTPILLLTALDNIDDRVKGLNLGADDYLTKPFDTKELIARIKALSRRGSGSITEEVLH 129

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +  +     +      L ++E  +LE LM N+   ++K  I   ++G+   A+ +
Sbjct: 130 IGNVSLNVNNASLSIGDREETLTKKEANLLETLMKNKDNVLSKDYILDKVWGIDSYAI-D 188

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N VE +I  LRKKL +      V + R LGY++
Sbjct: 189 NSVEIYIHYLRKKLGSDADVKIV-TNRGLGYTL 220


>gi|30260805|ref|NP_843182.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525930|ref|YP_017279.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183643|ref|YP_026895.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165872685|ref|ZP_02217314.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635188|ref|ZP_02393504.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640906|ref|ZP_02399164.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689014|ref|ZP_02880214.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708465|ref|ZP_02898907.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652822|ref|ZP_02935195.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568540|ref|ZP_03021446.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227816479|ref|YP_002816488.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601364|ref|YP_002865249.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684272|ref|ZP_05148132.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722076|ref|ZP_05183865.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738737|ref|ZP_05196440.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742051|ref|ZP_05199738.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754962|ref|ZP_05206996.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762307|ref|ZP_05214151.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254254|gb|AAP24668.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501078|gb|AAT29754.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177570|gb|AAT52946.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164711546|gb|EDR17094.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511126|gb|EDR86514.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529447|gb|EDR92198.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126586|gb|EDS95471.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170666999|gb|EDT17762.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081856|gb|EDT66925.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560334|gb|EDV14313.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006857|gb|ACP16600.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265772|gb|ACQ47409.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  +       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWNEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220


>gi|89894532|ref|YP_518019.1| hypothetical protein DSY1786 [Desulfitobacterium hafniense Y51]
 gi|219668964|ref|YP_002459399.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333980|dbj|BAE83575.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539224|gb|ACL20963.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 23/234 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DD+ +V+   I L  +     + FN L+  E ++      V  I   ++ + + +
Sbjct: 3   ILVCDDDKEIVEAIRIYLAHEGYTIHKAFNGLQALEVIEEQTVHLV--IMDIMMPQMDGI 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
             L +I R    +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 61  RALMKI-REERNIPVIMLSAKSEDTDKIMGLNMGADDYITKPFNPLELIARVKSQLRRYV 119

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L+   N  ++G + +  + +   V GE   L   + +IL+ L AN G+  +  QI+
Sbjct: 120 TLGSLETKTNVYQSGGLMIDDESKCVTVDGEEVKLTPVQYKILKLLTANAGRVFSIDQIY 179

Query: 175 SAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
             ++   +EA    EN V  HI K+R+K+      +P + K       +GY I+
Sbjct: 180 ENVW---NEAAFSAENTVAVHIRKIREKIE----INPKEPKYLKVVWGIGYKIE 226


>gi|289623891|ref|ZP_06456845.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648450|ref|ZP_06479793.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486910|ref|ZP_07004964.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158575|gb|EFH99641.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330868308|gb|EGH03017.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 227

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ + +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 63  GRDGMDICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   S      G ++V          G    L   E R+L     + G+  ++  +   
Sbjct: 123 RRSSSSEPHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SHI  LR+KL     G DP+ S   +GY ++ 
Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227


>gi|260888931|ref|ZP_05900194.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
 gi|260861378|gb|EEX75878.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
          Length = 227

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 2/159 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           + RI    ++VP++ ++   ++   +   D G DD + KP    E++AR+  + RR    
Sbjct: 63  IKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNSGN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++N      ++V  D +       +  L  RE  ILEYL+ N+GK +++ +I   I+  +
Sbjct: 123 ADNVVTIANLKVDLDAKTVFRDDLLIKLSGREYSILEYLIRNKGKILSRERIEDHIWN-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     NV++ +I  LRKK+ +      + + R LGY +
Sbjct: 182 DYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVL 220


>gi|209364040|ref|YP_001424665.2| transcriptional regulatory protein [Coxiella burnetii Dugway
           5J108-111]
 gi|207081973|gb|ABS77180.2| transcriptional regulatory protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 232

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 17/226 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + DG  A     G +++     +    + SS  E    I   L       L+
Sbjct: 13  LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 72

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR  +   P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 73  VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR--- 129

Query: 122 SNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S  RA+  PI    D   DP      ++ +   + RRE  +L+ L+ N G+ +++ Q+  
Sbjct: 130 SKERAK--PIISHGDITLDPASHVVTLKKKEVMVSRREFALLQKLLENAGRVISREQLNQ 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +YG + E ++ N +E HI  LRK+   KL    + + R +GY ++
Sbjct: 188 TLYG-WGENIDSNALEVHIHNLRKRFGAKL----IRTIRGVGYMVE 228


>gi|194467231|ref|ZP_03073218.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194454267|gb|EDX43164.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 239

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R HSQVP+I IS        +    +G DD + KP     +LA++ A+ RR K + +  
Sbjct: 80  VRKHSQVPIIVISAAEIDTNVMHAVAAGADDYIMKPFAMTVLLAKIQALLRRNKQTTDAE 139

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E         P+       +   Q     L   E  +L+ L+++R K V+K Q+   ++ 
Sbjct: 140 EIMWDHNSFNPLTNILTNENGTAQ-----LTPTEGAMLQVLLSHRNKTVSKEQLLQWLWQ 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              + + EN +  +IS+LR KL        + ++R LGY
Sbjct: 195 -GGKYLNENTLNVNISRLRTKLSTIGLRQCIHTERGLGY 232


>gi|109453300|gb|ABG34130.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453304|gb|ABG34132.1| PhoP [Salmonella enterica subsp. arizonae]
          Length = 213

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 2/141 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   +++      P 
Sbjct: 73  LPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V    R+  V  E+  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 133 QVDLSRRELSVNEEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191

Query: 192 SHISKLRKKLRNKLGFDPVDS 212
             + +LRKK++ +   D + +
Sbjct: 192 VLMGRLRKKIQAQYPHDVITT 212


>gi|89096806|ref|ZP_01169698.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088821|gb|EAR67930.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 198

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 10/163 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L  +++  S +P+I ++        +   D G DD + KP   RE+L+R+ ++ RR   
Sbjct: 36  DLCSLVKKQSDLPVIFLTAMDEEVNVVMGLDMGADDYITKPFRVRELLSRIRSVLRRYDK 95

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  T   I V +        GE   L   E R+L     ++G+ + ++Q+   I+ +
Sbjct: 96  QDRQTVTFQAITVHTGEGKVYKHGEEIQLTALEYRLLLIFANHKGQVLTRSQLLDKIWDV 155

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
             + V +N +  +I +LR+KL +    DP     + + R LGY
Sbjct: 156 AGDFVNDNTLTVYIKRLREKLED----DPQKPSIIKTVRGLGY 194


>gi|308067144|ref|YP_003868749.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305856423|gb|ADM68211.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 5/130 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPR 151
           G DD V KP    E+LAR+ A  R  +  +   E   GP +V    ++   Q +V  L  
Sbjct: 100 GADDYVVKPFSFNELLARIEARLRN-QFPDLLGEVVHGPFQVDDRRKEIRYQSQVLELSP 158

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
            E  +L++L+ N G  ++K++I   ++G +D   E+N+VE +I  LR+KL++K     + 
Sbjct: 159 TEYELLKFLVLNHGIVLSKSRILDRVWG-YDFGGEDNIVEVYIRSLREKLKDK-EHRVIR 216

Query: 212 SKRFLGYSID 221
           + R +GY +D
Sbjct: 217 TLRGVGYRVD 226


>gi|293400081|ref|ZP_06644227.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306481|gb|EFE47724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 21/200 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L  +GYI    D+G            E +     +D+  ++  +   G    +  R IR 
Sbjct: 22  LSNEGYIVNEADNGA-----------EAITKCEAQDLIILDIMM--PGMDGFKTCRRIRE 68

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-------- 121
            + VP++ ++     Q   D F+SG DD + KP  + E+L+RV A+ RR  V        
Sbjct: 69  LTNVPILFLTSKTLDQDKEDGFNSGGDDYLIKPFSYSELLSRVNALIRRFYVYRGKSNIE 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +N  E   ++V  +     V  E   L   E RIL+ L+ N  +  +  +++ +I+   
Sbjct: 129 ESNIIERNDLKVDQNSNRVWVGDEEVNLTEIEYRILQLLITNPKRVFSNKELYESIWDES 188

Query: 182 DEAVEENVVESHISKLRKKL 201
                 N +  HI  LRKKL
Sbjct: 189 YLYTANNTIMVHIRNLRKKL 208


>gi|184158146|ref|YP_001846485.1| response regulator [Acinetobacter baumannii ACICU]
 gi|332872696|ref|ZP_08440663.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183209740|gb|ACC57138.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|310756669|gb|ADP20467.1| AdeR [Acinetobacter baumannii]
 gi|310756672|gb|ADP20469.1| AdeR [Acinetobacter baumannii]
 gi|310756675|gb|ADP20471.1| AdeR [Acinetobacter baumannii]
 gi|310756678|gb|ADP20473.1| AdeR [Acinetobacter baumannii]
 gi|310756681|gb|ADP20475.1| AdeR [Acinetobacter baumannii]
 gi|310756684|gb|ADP20477.1| AdeR [Acinetobacter baumannii]
 gi|310756687|gb|ADP20479.1| AdeR [Acinetobacter baumannii]
 gi|310756690|gb|ADP20481.1| AdeR [Acinetobacter baumannii]
 gi|310756693|gb|ADP20483.1| AdeR [Acinetobacter baumannii]
 gi|310756696|gb|ADP20485.1| AdeR [Acinetobacter baumannii]
 gi|310756699|gb|ADP20487.1| AdeR [Acinetobacter baumannii]
 gi|310756702|gb|ADP20489.1| AdeR [Acinetobacter baumannii]
 gi|310756705|gb|ADP20491.1| AdeR [Acinetobacter baumannii]
 gi|310756708|gb|ADP20493.1| AdeR [Acinetobacter baumannii]
 gi|310756714|gb|ADP20497.1| AdeR [Acinetobacter baumannii]
 gi|322508464|gb|ADX03918.1| AdeR [Acinetobacter baumannii 1656-2]
 gi|323518087|gb|ADX92468.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332739090|gb|EGJ69950.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 247

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR     KV+
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKVT 137

Query: 123 NNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N       I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|182626720|ref|ZP_02954461.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium perfringens D str. JGS1721]
 gi|177907943|gb|EDT70532.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium perfringens D str. JGS1721]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 17/198 (8%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LV DGY  +  + G  L G    EF++ +      DVS         G     +   IR 
Sbjct: 22  LVDDGYDVITFETGDRLLG----EFKQKIPDLVILDVSM-------PGTDGFSICSSIRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-----KVSNN 124
            S VP+I ++   +    +  F  G DD   KP    ++  RV A+ +R+     K  N 
Sbjct: 71  ISNVPIILLTARDTDADYITGFTLGCDDYFTKPFSPVKLTMRVKAMLKRISNEKEKAKNE 130

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               G I +    +    +     L   E  +L Y++ N+ K V++ ++ + I+G +   
Sbjct: 131 EITFGDIVLLPAKKSAYCKEHEIKLTNTEFELLYYMIENKEKAVSREELLNVIWG-YSSE 189

Query: 185 VEENVVESHISKLRKKLR 202
           VE  V +  I +LRKK+R
Sbjct: 190 VETRVTDDTIKRLRKKIR 207


>gi|120434488|ref|YP_860186.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117576638|emb|CAL65107.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 227

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 8/131 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVF 147
           FD+G DD + KPI  + ++++V A+ RR +    S+N  + G I +  +       G   
Sbjct: 98  FDAGADDYITKPIKPKVLVSKVKALLRRYREEDTSSNIVKLGDITINREEYKIVQNGNEM 157

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            LPR+E  +L  L +  GK   +  I   ++G  D  V    ++ HI    +KLR K+G 
Sbjct: 158 ALPRKEFELLSLLASKPGKVFKREDILDNVWG-NDIVVGGRTIDVHI----RKLREKIGD 212

Query: 208 DPVDSKRFLGY 218
           D + + + +GY
Sbjct: 213 DKIKTIKGVGY 223


>gi|108797145|ref|YP_637342.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866230|ref|YP_936182.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108767564|gb|ABG06286.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692319|gb|ABL89392.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 243

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 4/153 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           + +P+  +S   ++   +   ++G DD + KP    E++AR+ A+ RR   S+  ++T  
Sbjct: 88  NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHSDRPSDTMT 147

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GP+ + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++G +D  V+ 
Sbjct: 148 VGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVWG-YDFDVDT 206

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           NV +  IS LR+KL        + + R +GY +
Sbjct: 207 NVADVFISYLRRKLERDGLPRVIHTVRGIGYVL 239


>gi|24113461|ref|NP_707971.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a
           str. 301]
 gi|30063524|ref|NP_837695.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a
           str. 2457T]
 gi|110806049|ref|YP_689569.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 5
           str. 8401]
 gi|24052492|gb|AAN43678.1| transcriptional response regulatory protein (sensor BaeS) [Shigella
           flexneri 2a str. 301]
 gi|30041777|gb|AAP17504.1| transcriptional response regulatory protein (sensor BaeS) [Shigella
           flexneri 2a str. 2457T]
 gi|110615597|gb|ABF04264.1| transcriptional response regulatory protein [Shigella flexneri 5
           str. 8401]
 gi|281601525|gb|ADA74509.1| Transcriptional response regulatory protein [Shigella flexneri
           2002017]
 gi|313649874|gb|EFS14294.1| transcriptional regulatory protein baeR [Shigella flexneri 2a str.
           2457T]
 gi|332755913|gb|EGJ86267.1| transcriptional regulatory protein baeR [Shigella flexneri K-671]
 gi|332756855|gb|EGJ87200.1| transcriptional regulatory protein baeR [Shigella flexneri 2747-71]
 gi|332766432|gb|EGJ96641.1| response regulator [Shigella flexneri 2930-71]
 gi|333002115|gb|EGK21680.1| transcriptional regulatory protein baeR [Shigella flexneri VA-6]
 gi|333002508|gb|EGK22070.1| transcriptional regulatory protein baeR [Shigella flexneri K-218]
 gi|333017079|gb|EGK36400.1| transcriptional regulatory protein baeR [Shigella flexneri K-304]
          Length = 240

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 90/201 (44%), Gaps = 19/201 (9%)

Query: 9   ALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           +L +DGY  L   DG  +L+ FN   F+  +       +              LE+ + I
Sbjct: 21  SLEQDGYEILSASDGEEALDKFNKGSFDLIILDLMLPKIDG------------LEVCQTI 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VS 122
           R  SQ P+I ++      T +   + G DD + KP +  E+ AR+ A+ RR +     V 
Sbjct: 69  RQTSQTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVLRRAQSKEGNVG 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                    ++ + GR   + GE   L  +E  +L  L +N GK  ++  +   I+G ++
Sbjct: 129 ERVIHIDDFKINTMGRKVSIHGEEVNLTAKEFDLLLLLASNHGKVYSREALLEIIWG-YE 187

Query: 183 EAVEENVVESHISKLRKKLRN 203
              +   V+ H+ +LR+K+ +
Sbjct: 188 YFGDLRTVDVHVRRLREKVES 208


>gi|332638568|ref|ZP_08417431.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 237

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 15/189 (7%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D+  ++  L GK    ++L R +R   +++P+I I+        +   + G DD V KP 
Sbjct: 47  DLMLLDVMLPGKSG--VDLTRELRGEQNRIPIIMITALDDEVDKILGLEIGADDYVTKPF 104

Query: 104 HHREILARVAAIYRRL---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
             RE++ARV A+ RRL         K      + G + +  D    + QGE+  L  +E 
Sbjct: 105 SPREVIARVRAVLRRLDKQQEPQVAKTPTKLKQFGNLTIDFDKMVVQRQGEIVKLTPKEY 164

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK- 213
            +L Y+    G+ + +  I   ++G      +  +V+ H+S LR K+ +     PV  K 
Sbjct: 165 ELLAYMADREGRVLDRETILHGVWGYDYAGPDTRMVDMHLSHLRDKVEDDPKH-PVHLKT 223

Query: 214 -RFLGYSID 221
            R  GY  D
Sbjct: 224 VRGFGYRFD 232


>gi|300723604|ref|YP_003712909.1| response regulator in two-component regulatory system with PhoQ
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630126|emb|CBJ90763.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Mg+] (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 227

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++          G  ++   + +  ++       D++ I+  L   GE  L
Sbjct: 3   ILIVEDNALLRHHLTVQLRGIGHQVDAAENAKEADYYLKENHPDIAIIDLGL--PGEDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R  R     +P++ ++   S Q  +   ++G DD V KP H  EI AR+ A+ RR  
Sbjct: 61  SMLRRWRNEQINLPILVLTARESWQEKVAVLNAGADDYVTKPFHLEEINARIQALMRRNS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    ++  V      L   E  I+E LM N GK V+K  +   +Y 
Sbjct: 121 GLASQIVALSPFLIDLSRKEFSVNETNIRLTAFEYTIIETLMRNNGKVVSKESLMRQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK+ N+   + + + R  GY  D
Sbjct: 181 -DAELRESHTIDVLMGRLRKKILNQWPEEVIVTVRGQGYRFD 221


>gi|237808666|ref|YP_002893106.1| DNA-binding transcriptional regulator BasR [Tolumonas auensis DSM
           9187]
 gi|237500927|gb|ACQ93520.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 220

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 98/219 (44%), Gaps = 18/219 (8%)

Query: 16  IALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFL-----------IGKGEKVLEL 63
           I L  DD + L G   +LE +++    AR    A    L           +  G+ +  L
Sbjct: 3   ILLIEDDALLLNGLQKALEQQQYCCDIARSLSEARRYTLDDYDLIILDLGLPDGDGLTLL 62

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLKVS 122
            +  +     P++ ++   SL   +   D G DD + KP    E+ ARV A+  RR + +
Sbjct: 63  KQWRQQGCSQPVLILTARDSLDDRVKGLDQGADDYLIKPFALAELQARVRALMRRRFEKA 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N  ++G +++  +     +  +   L R E  IL  LM + GK V + ++   +Y   D
Sbjct: 123 ENALQSGALKLDMNLNQVWLHEQELTLTRMEYAILRRLMLHAGKTVQRERLQQDLYDWND 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E +  N +E +I  LR+    KLG D + + R  GY ++
Sbjct: 183 E-IGSNTLEVYIHHLRR----KLGSDSIRTIRGEGYRLE 216


>gi|150005501|ref|YP_001300245.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254884052|ref|ZP_05256762.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294778703|ref|ZP_06744122.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|319640726|ref|ZP_07995439.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
 gi|149933925|gb|ABR40623.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254836845|gb|EET17154.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294447359|gb|EFG15940.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|317387538|gb|EFV68404.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 4/150 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  ++   H +  +I +S   S++  +   + G DD + KP H  E+ AR+ +
Sbjct: 57  GSGLDLLE--KLKEMHKRENVIILSAKDSIEDKVLGLELGADDYLPKPFHLVELNARIKS 114

Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR +    N  + G I +F D     V G+   L R+E  IL Y M   G+ V K+ +
Sbjct: 115 VIRRHQQGGENSIKYGNIEIFPDKYGVTVAGKKLELNRKEYDILVYFMNRPGRLVNKSTL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLR 202
             +++G   D+    + + + I  LRK+L+
Sbjct: 175 AESVWGDHIDQVDNFDFIYAQIKNLRKRLK 204


>gi|126432768|ref|YP_001068459.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126232568|gb|ABN95968.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 243

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 4/153 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           + +P+  +S   ++   +   ++G DD + KP    E++AR+ A+ RR   S+  ++T  
Sbjct: 88  NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHSDRPSDTMT 147

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GP+ + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++G +D  V+ 
Sbjct: 148 VGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVWG-YDFDVDT 206

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           NV +  IS LR+KL        + + R +GY +
Sbjct: 207 NVADVFISYLRRKLERDGLPRVIHTVRGIGYVL 239


>gi|58583289|ref|YP_202305.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84625120|ref|YP_452492.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578384|ref|YP_001915313.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58427883|gb|AAW76920.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84369060|dbj|BAE70218.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522836|gb|ACD60781.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 14/182 (7%)

Query: 33  EFEEWLQSSAREDVSAI-----EAFLIG---KGEKVLELPRIIRAHS---QVPLIGISDY 81
           EFE      ARE  +AI     +  L+     G   L+L R  R       +P+I ++  
Sbjct: 26  EFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDLARRWRKEQLTRDIPIIMLTAR 85

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141
                 +   ++GVDD V KP   RE+LAR+ A+ RR +  +        R+  DG    
Sbjct: 86  GEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVGRLRIDGAAHR 145

Query: 142 VQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
           V     P+P    E R+L + M +  +   +TQ+   ++G     VEE  ++ HI +LRK
Sbjct: 146 VFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERTIDVHIRRLRK 204

Query: 200 KL 201
            L
Sbjct: 205 TL 206


>gi|304322363|ref|YP_003856006.1| two-component response regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303301265|gb|ADM10864.1| two-component response regulator [Parvularcula bermudensis
           HTCC2503]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 5/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A  ++P++ ++    L   ++  D+G DD + KP    E  AR+ A+ RR  ++
Sbjct: 63  LKRLRAAGRKMPVLLLTAMGGLDDRVEGLDAGADDYLVKPFAFSEAYARLNALVRRPPIA 122

Query: 123 NNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N        +  D   R     G    L  +E  +LE L+ N+ + + KT +   ++  
Sbjct: 123 GNPTTLTAADLHMDLIARTVSRGGVSLDLGPKEFLLLEILLRNKNRVMTKTMLLERVWSF 182

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   + ++VE+HIS+LR K+        V++ R  GY I
Sbjct: 183 HFDP--QTSLVETHISRLRAKIDRPFASALVETVRGAGYVI 221


>gi|297518448|ref|ZP_06936834.1| DNA-binding transcriptional regulator PhoP [Escherichia coli OP50]
          Length = 213

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 99/204 (48%), Gaps = 5/204 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R++   +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
             E  E + ++  + +LRKK++ +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQ 204


>gi|220919230|ref|YP_002494534.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957084|gb|ACL67468.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 230

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 6/133 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAET-GPIRVFSDGRDPEVQGEVF 147
           F+ G DD V KP   RE++ R+ A+ RR   + S    E+ GPIRV  +     V G   
Sbjct: 94  FELGADDYVTKPFSVRELVLRLKAVLRRAGARPSERPPESVGPIRVDVESHRVYVDGAEV 153

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E ++L  LM+  G+  ++ Q+   ++ +  E VE   V++H+ +LR+KL +  G 
Sbjct: 154 VLTPLEFKLLTTLMSRLGRVQSRDQLLEDVWEMSAE-VETRTVDTHVKRLREKLGS--GR 210

Query: 208 DPVDSKRFLGYSI 220
           D +++ R +GY +
Sbjct: 211 DLLETVRGIGYRL 223


>gi|60677303|ref|YP_209661.1| DNA-binding response regulator [Clostridium perfringens]
 gi|60417938|dbj|BAD90605.1| DNA-binding response regulator [Clostridium perfringens]
          Length = 217

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 83/161 (51%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR  S++P++ ++ +   +  +D F +  D  V KP     + AR+ ++ ++  
Sbjct: 59  LDVLKEIRKKSKLPILILTAFSDEEYKIDAFTNFADGYVEKPFSLPVLKARIDSLIKKNF 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   I V  +    ++ GE   +  +E  IL+YL+ N G+ + + QI   ++  
Sbjct: 119 GQIEKFEYKNIDVNFNSYTVKINGENIYIYAKELEILKYLVDNEGQVLTRMQIIDNVWKE 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 179 TEEIPYDRVIDVYIKELRKKLK----LDCITTIRNVGYKLE 215


>gi|268590467|ref|ZP_06124688.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131]
 gi|291314147|gb|EFE54600.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131]
          Length = 222

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++ + H + P++ ++    +   +   ++G DD + KP    E+ AR+ A+ RR +  
Sbjct: 63  LAQMRKRHQETPVLLLTANSDVADRVQGLNAGADDYLTKPFDIAELEARLRALLRRSQGQ 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N ++   +  + +     +  E   L  RE  +L  L   RG+ V+K Q+F  ++ L D
Sbjct: 123 VNESQQFGLLSYHEDGYFLLGEEPLGLTPREYAVLNTLFHRRGRPVSKMQLFEQVFSLSD 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           EA  ++ +E ++ ++RKKL    G D  +++ R LGY ++
Sbjct: 183 EANLQS-IELYVHRVRKKLA---GSDVNINTLRGLGYRLE 218


>gi|255283546|ref|ZP_05348101.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bryantella formatexigens DSM 14469]
 gi|255265808|gb|EET59013.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bryantella formatexigens DSM 14469]
          Length = 223

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +IR  S VP+I ++   + +  +   D   DD + KP     +L ++AA+ RR    ++ 
Sbjct: 66  VIRQKSNVPIIMLTALDNEENQIKGLDLQADDYITKPFSMPVLLRKIAAVLRRSSRQDDV 125

Query: 126 AETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +T   +  +   DG       E   L  RE  IL  L+ ++G+ + +  +   ++  ++
Sbjct: 126 PQTINYKDLTLDLDGYKVYNGQESVDLTPREFEILRELLTHKGRILTRQNLLQTLWK-YE 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              EE ++++HI  LRKKL      D +++ R +GY ID
Sbjct: 185 FFGEERIIDTHIKNLRKKLGTA---DYIETIRGVGYRID 220


>gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 14/208 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + V+ DDRA V++        +G S+E   + LE  E + +S R D   ++  +      
Sbjct: 3   ILVVDDDRA-VRESLRRSLSFNGYSVELAHDGLEALEMI-ASDRPDALVLDVMM--PRLD 58

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR
Sbjct: 59  GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQ 172
            K  +  AE+  ++ FSD     V  EV        L R E  +LE L+AN  + + +++
Sbjct: 119 TKPDDEDAESVAMK-FSDLTLDPVTREVTRGQRQISLTRTEFALLEMLIANPRRVLTRSR 177

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKK 200
           I   ++G FD     N +E ++  LR+K
Sbjct: 178 ILEEVWG-FDFPTSGNALEVYVGYLRRK 204


>gi|222836662|gb|EEE75055.1| predicted protein [Populus trichocarpa]
          Length = 234

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNN 124
           +A + VPL+ +S        +   + G DD + KP   RE++AR  A+ R   RL+ +  
Sbjct: 72  QAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRAQRLQPAPT 131

Query: 125 RAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +      +FS    G+   +QG    L RRE ++L  L+   G+ +++  +  +I+G  
Sbjct: 132 ASAAPADAMFSIDTQGQRVRMQGVALDLTRREYQLLRCLLERPGRILSREFLLDSIWG-Q 190

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           D    +  V++H+  LR KLR +    D + + R +GYS+
Sbjct: 191 DSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 230


>gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 13/166 (7%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   +QVP+I ++    +   +   D+G DD V KP    E+LARV A  RR  
Sbjct: 63  EICRRLRTTGNQVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHLRR-- 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIF 174
              N+ E   I  F+D        EV+       L  +E  +LEYL+A+  + + + QI 
Sbjct: 121 ---NQTEDPNILQFADLSLNHSTREVYRGQRLIELTVKEFDLLEYLLAHPRQVLTREQIL 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   + N++E +I  LR KL        V + R +GY +
Sbjct: 178 ERVWG-YDFMGDSNIIEVYIRYLRLKLEANNESRLVQTVRGVGYVL 222


>gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 2/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F+ G DD + KP    E++ARV A+ +R ++
Sbjct: 62  ELCRELRDYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++  + G + +     +  +  +   LP +E  +L  L +  GK   + ++   I+G 
Sbjct: 122 TTSQIVQIGHLSLNRKTYECRLGDQEITLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 181 YDYEGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 221


>gi|221066592|ref|ZP_03542697.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220711615|gb|EED66983.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 238

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 15/223 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D       D+G  LE  +    ++ L    R    A+   L+  G   L
Sbjct: 7   ILLVEDDAHIADLLSLHLRDEG--LEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA ++  P+I IS   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 65  EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 121 --VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               + R E+G + V         RD  + G    L  RE  +L +     GK  ++  +
Sbjct: 125 ALAQSARLESGSLSVNGLVMDPVARDASLNGRHLDLTPREFDLLYFFARQSGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            +A++G   E   E+ V +HI++LR K+      +P    R L
Sbjct: 185 LNAVWGYQHEGY-EHTVNTHINRLRAKVER----NPAQPTRIL 222


>gi|110801527|ref|YP_699386.1| vncR, response regulator [Clostridium perfringens SM101]
 gi|110682028|gb|ABG85398.1| vncR, response regulator [Clostridium perfringens SM101]
          Length = 217

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 83/161 (51%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR  S++P++ ++ +   +  +D F +  D  V KP     + AR+ ++ ++  
Sbjct: 59  LDVLKEIRKKSKLPILILTAFSDEEYKIDAFTNFADGYVEKPFSLPVLKARIDSLIKKNF 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   I V  +    ++ GE   +  +E  IL+YL+ N G+ + + QI   ++  
Sbjct: 119 GQIEKFEYKNIDVNFNSYTVKINGENIYIYAKELEILKYLVDNEGQVLTRMQIIDNVWKE 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 179 TEEIPYDRVIDVYIKELRKKLK----LDCITTIRNVGYKLE 215


>gi|88319801|emb|CAH10125.1| putative repressor-response regulator [Streptomyces sp. SCC 2136]
          Length = 283

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 12/148 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +RA S V +I ++   +  T LD      +G DD V KP    E++AR+ A+ R
Sbjct: 122 IEICRFVRAASGVGVIVVT---ARDTELDRVLSLKAGADDYVVKPYSLPELMARIEAVMR 178

Query: 118 R---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR-GKRVAKTQI 173
           R   L ++     +GP+R+ S  R+  +  E   + R+E  +L YL+A+R G  V++ QI
Sbjct: 179 RVRPLPLTTEVISSGPLRIDSRTREIRLGDEPVEVTRKEFDLL-YLLASRPGSVVSRKQI 237

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            + ++G    +     +++H+S LR KL
Sbjct: 238 MTLVWG-DSRSQPGRTIDTHVSSLRSKL 264


>gi|295107805|emb|CBL21758.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 230

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------- 119
           IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR        
Sbjct: 67  IREKNALPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQLGAAA 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N  ETG + +  D ++  V GEV  L   E RIL  L+ N+G+  +  QI+ +I+ 
Sbjct: 127 EKRGNIYETGGLMIDDDRKEVTVDGEVVKLTPIEYRILLLLVKNQGRVFSINQIYESIWE 186

Query: 180 LFDEAV-EENVVESHISKLRKKL 201
             +EA+  +N V  HI  +R+K+
Sbjct: 187 --EEAIAADNTVAVHIRHIREKI 207


>gi|282882337|ref|ZP_06290965.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
 gi|281297758|gb|EFA90226.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
          Length = 233

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 25/207 (12%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRI--------IRAHSQVPLIGISD 80
           LE E +    A + + AIE F     + +   L +PR+        +R  S VP+I +S 
Sbjct: 23  LENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGEEAIKKLRDISFVPIIILSA 82

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-----ETGPIRVFS 135
                  +   + G DD + KP +  E++ARV +  RR    +N A     + G I++ +
Sbjct: 83  KSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHSYDNLASSEIIQIGNIKLNT 142

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
             +   V  ++  L   E +ILE+LM N  K  +   I+  ++   + A+E   V  HI 
Sbjct: 143 FEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEHVWN--EPAIEAKTVTVHIR 200

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++R+K+        VD KR +   + W
Sbjct: 201 RIREKIE-------VDPKRPMYIQVAW 220


>gi|237744968|ref|ZP_04575449.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|256028433|ref|ZP_05442267.1| two-component response regulator czcR [Fusobacterium sp. D11]
 gi|289766356|ref|ZP_06525734.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
 gi|229432197|gb|EEO42409.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|289717911|gb|EFD81923.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 4/150 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAET 128
           ++ P++ ++   +++  +   D G DD + KP    E+LAR+ AI RR K  N  N  + 
Sbjct: 71  NETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRR-KYGNVSNELQI 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             + V +  +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++    E  E N
Sbjct: 130 DDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWDYAYEG-ESN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +++  I  +RKK+        + +KR LGY
Sbjct: 189 IIDVLIKNIRKKIDLGNSKPLIHTKRGLGY 218


>gi|229116660|ref|ZP_04246046.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228666832|gb|EEL22288.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----- 117
           + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +       
Sbjct: 64  VCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSS 123

Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++  ++    +G I +    R   + GE   L   E  IL Y M N+G  +++ Q+ +
Sbjct: 124 AVKVLTADTLTSSG-IHLHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204
            I+G ++ A ++  + SHI  LR KL  K
Sbjct: 183 KIFG-YEFAGDDRTINSHIRNLRHKLGQK 210


>gi|332139783|ref|YP_004425521.1| transcriptional regulator [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549805|gb|AEA96523.1| transcriptional regulator [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 214

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 3/130 (2%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           +G DD ++KP    E+ AR+ ++ RR      N++     + +    +       +  L 
Sbjct: 78  AGADDYLSKPFSFDELTARLLSLMRRGAANCLNDQVTINSLTLNIQFKTLSYNNGIINLT 137

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
             E +I+E +  NR K V    +   I G +D  + +N +E+H+S  RKK+R      P+
Sbjct: 138 PNEYKIVECIFLNRHKIVTSEMLSEFISGSYDH-ISKNAIEAHLSSARKKVRESGASLPI 196

Query: 211 DSKRFLGYSI 220
            SKR  GY +
Sbjct: 197 KSKRGFGYRV 206


>gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 7/161 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++        +     G DD + KP   RE+LAR+ A  RR    +   
Sbjct: 71  IREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHSFSKEQ 130

Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           E     G + +  +GR   V+G+   L R+E  +L   + N  K  ++ Q+   I+G  +
Sbjct: 131 EATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQIWGT-E 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                  V++HI  LR KL    G+  + +   +GY  + N
Sbjct: 190 YHGNLRTVDTHIKTLRLKLGEAGGY--IQTVWGIGYKFEAN 228


>gi|126651205|ref|ZP_01723415.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592043|gb|EAZ86109.1| two-component response regulator [Bacillus sp. B14905]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 83/157 (52%), Gaps = 3/157 (1%)

Query: 67  IRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           IR++ + +P++ ++        +  F  G DD + KP    E++ RV +I +R +++ ++
Sbjct: 67  IRSYNTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRIALSQ 126

Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E G +++     + ++ GE+  L  +E  +L  L +  GK  ++ Q+   I+G +D  
Sbjct: 127 VVEAGNVKLDRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWG-YDYE 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E  V+ HI ++R++   ++    + + R LGY ++
Sbjct: 186 GDERTVDVHIKRIRERFPQEISGFAIRTIRGLGYRLE 222


>gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis]
          Length = 238

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R H+ VP++ ++        +     G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  IEVCRRMRNHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFL 122

Query: 121 V--SNNRAETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  S +R++   +  F     D +   V   G+   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           +F   +   D+ +E +N V  HI +LRKK+
Sbjct: 183 LFRNAWS--DQYIEDDNTVMVHIRRLRKKI 210


>gi|218516896|ref|ZP_03513736.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli 8C-3]
          Length = 629

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 14/162 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ ++ S++P+I ++   SL   +   DSG DD + KP    E+ AR+ A+ RR +  
Sbjct: 63  LKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQDR 122

Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   T    +FS G R   V GE   L  RE  +LE L+   G  V+KT +  A     
Sbjct: 123 ASSEITVGDLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKLGTTVSKTALPKA----- 177

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                 + VE +I +LRKKL N      + + R LGY  D +
Sbjct: 178 ------SSVEIYIHRLRKKLENS--SVQIATLRGLGYLSDMS 211


>gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  S+ P+I ++        +   + G DD + KP   +E++AR+ A+ RR  
Sbjct: 65  IDVLKWIRKESETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYN 124

Query: 121 VSNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V N   +    +  +   +  +    + E+  +P +E  +L YL +N  K   + Q+   
Sbjct: 125 VENEDKDVLKFKSLTIDINSYIVVYKENEI-KMPPKEFELLYYLASNCNKVFTREQLLCE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202
           ++G +D   +   V+ HI +LR+KL+
Sbjct: 184 VWG-YDYPGDSRTVDVHIKRLREKLQ 208


>gi|167565338|ref|ZP_02358254.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167572443|ref|ZP_02365317.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 220

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R    +P+I I+   +L   +   D G DD + KP    E+LAR+ A+ RR      RA+
Sbjct: 68  RRDDALPVIVITARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---QAGRAQ 124

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           T    G +R+           E   L  +E  +L  LM   G  +++ Q    +Y  + E
Sbjct: 125 TVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS-WGE 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 184 EIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216


>gi|126454435|ref|YP_001066318.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|217421980|ref|ZP_03453484.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|226197446|ref|ZP_03793023.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|242314811|ref|ZP_04813827.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254198192|ref|ZP_04904614.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|126228077|gb|ABN91617.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|169654933|gb|EDS87626.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|217395722|gb|EEC35740.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|225930825|gb|EEH26835.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|242138050|gb|EES24452.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
          Length = 237

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124
           + +S +P++ +++       +   ++G DD V KP   +E +ARV A+YRR    +  + 
Sbjct: 68  KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 127

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E GP R+ +  +      E   L  +E  I+E L  N G+ V++ ++   ++G   + 
Sbjct: 128 LIEIGPYRIQTSEKVVYFHREAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 187

Query: 185 VEENVVESHISKLRKKL 201
                +++HI ++R+KL
Sbjct: 188 AAFRTLDTHIYRIRRKL 204


>gi|229541697|ref|ZP_04430757.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326117|gb|EEN91792.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET 128
           + P++ ++   SL+  +   + G DD + KP    E+ AR+ A  RR   + + +     
Sbjct: 71  ETPVLFVTAKDSLEDRVTGLEIGGDDYIVKPFQAAELKARIRASLRRSGNMTIDHTLRYR 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G I +F   ++ +V G+   L   +  +LEYL+ N G  + + QIF  ++G F+      
Sbjct: 131 G-IELFGKEKEIKVDGQPLKLTITQYELLEYLIQNSGNILTREQIFDRVWG-FESDTTIA 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +VE +I  LRKKL        + + R +GY
Sbjct: 189 IVEVYIHHLRKKLEPFGYHKDIQNVRGIGY 218


>gi|160881553|ref|YP_001560521.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430219|gb|ABX43782.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 233

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA S VP+I I+        +   D G DD + KP    E++AR+ AI RR+  
Sbjct: 62  EVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTK 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + S N      + +  +     + G    L ++E   +  L +N  K   +  +  
Sbjct: 122 KENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
           +++G FD   +   V+SHI +LR KL
Sbjct: 182 SLWG-FDYFGDSRTVDSHIKRLRAKL 206


>gi|119716293|ref|YP_923258.1| two component transcriptional regulator [Nocardioides sp. JS614]
 gi|119536954|gb|ABL81571.1| two component transcriptional regulator, winged helix family
           [Nocardioides sp. JS614]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 3/187 (1%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           E L S +  DV+ ++  L G  + V    R+      +P++ ++    ++  +   D+G 
Sbjct: 38  ERLLSDSSLDVALLDWMLPGL-DGVTVARRLRDLGVALPILMLTARGDVRDRVSGLDAGA 96

Query: 96  DDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
           DD + KP    E+LAR+ A+YRR   V     + G + V    R     G    L  RE 
Sbjct: 97  DDYLPKPFDLDELLARLRALYRRGSLVGEAPVQLGDLVVDPVARRVTRGGVEIVLSAREF 156

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
            IL  L+++ G+ V++  I   ++   +  +  NV++ H++ +R K+    G + + + R
Sbjct: 157 DILHLLVSHAGRVVSRLMILDEVWD-GETDLRSNVIDVHLAAIRAKIDKPFGTETITTLR 215

Query: 215 FLGYSID 221
            +GY +D
Sbjct: 216 GVGYRVD 222


>gi|333003432|gb|EGK22976.1| transcriptional regulatory protein baeR [Shigella flexneri K-272]
 gi|333017262|gb|EGK36582.1| transcriptional regulatory protein baeR [Shigella flexneri K-227]
          Length = 240

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLNLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|323463631|gb|ADX75784.1| heme response regulator HssR [Staphylococcus pseudintermedius ED99]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   ++   + P+I ++   +L      F +G DD V KP    E++ R+ A+ RR ++
Sbjct: 63  ELCETLKYDYEYPVIMLTARDALSDKERAFLAGTDDYVTKPFEVAELIFRIQAVLRRYQI 122

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 T G + +     + +V+ +   LP +E  +L  L+A   +   + Q+   I+G+
Sbjct: 123 VTETLLTLGNLTIDQTQLEVKVETKGMILPHKEFELLSLLVAYPKQVFPREQLIEKIWGI 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            D   +E  V+ HI +LR +L+ KLG +  +++ R +GY +
Sbjct: 183 -DYEGDERTVDVHIKRLRARLK-KLGANVYIETVRGIGYKV 221


>gi|310756717|gb|ADP20499.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR     KV+
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKVT 137

Query: 123 NNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N       I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|310756711|gb|ADP20495.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR     KV+
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKVT 137

Query: 123 NNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N       I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|269976505|ref|ZP_06183490.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|269935306|gb|EEZ91855.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 10/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
           M   ++D   ++D  +   G  G    G    +      +  R ++  ++  L G  G +
Sbjct: 1   MIYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTRPELVLLDIMLPGTDGIQ 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   +  R+ + +P+I ++   +    +   D G DD V KP    E+++RV A+ RR 
Sbjct: 61  ILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLRRS 120

Query: 120 KVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             S   +        G I +        V GE   L  +E ++LE LM   G   ++ Q+
Sbjct: 121 SRSAQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRDQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +I+G +    E   V+ HI  LRKKL     +  + + R +GY +
Sbjct: 181 LDSIWG-YSFHGETRTVDVHIRTLRKKLGEAAKY--IKTVRGVGYKV 224


>gi|288940032|ref|YP_003442272.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288895404|gb|ADC61240.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L + R +RA  ++ P++ +S    +   ++   +G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LAIVRTLRASGNRTPVLFLSALGDVDDRVEGLRAGGDDYLIKPFAFSELQARVEALLRRG 119

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    R   G + +    R+    G+   L  RE R+LE LM + G+ V +T +   +
Sbjct: 120 AAEAPETRLRVGDLEMDLLKREVTRAGQSIQLQPREFRLLECLMRHAGRVVTRTMLLEQV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           +   FD   + NV++ HIS+LR K+     FDP  + + R  GY +
Sbjct: 180 WDYHFDP--QTNVIDVHISRLRGKIDKD--FDPPLLQTVRGAGYRL 221


>gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 247

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAE- 127
           S+ P++ +S        +   + G DD V KP   RE+LARV AI RR   ++S +  E 
Sbjct: 80  SKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEEH 139

Query: 128 ------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    +R++ +  +     E+ PL  +E  +L YLM +    + + ++   I+G +
Sbjct: 140 REPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRERLLERIWG-Y 198

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D   E  +V+ HI KLR+K+ +
Sbjct: 199 DFGQETRLVDVHIGKLREKIED 220


>gi|162295958|gb|ABX83927.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR     KV+
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKVT 137

Query: 123 NNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N       I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLSLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
          Length = 232

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 94/200 (47%), Gaps = 21/200 (10%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY     +DG   LE FN++          + D+  ++  +       LE+ R IR
Sbjct: 23  LTKEGYQVTVANDGEEGLEKFNAV----------KPDMVLLDVMMPRMDG--LEVCRRIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
                P++ ++        +   + G DD + KP   +E++AR+ A+ RR + ++  AE+
Sbjct: 71  KAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQTTSAAAES 130

Query: 129 GP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+   ++G F
Sbjct: 131 TEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLLDEVWG-F 189

Query: 182 DEAVEENVVESHISKLRKKL 201
           +   +   ++ H+ +LR+KL
Sbjct: 190 EYYGDSRTIDVHVKRLREKL 209


>gi|116690638|ref|YP_836261.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|206561168|ref|YP_002231933.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|116648727|gb|ABK09368.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|198037210|emb|CAR53131.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +R     +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IDVLRTLRGRGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 119 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216


>gi|114776380|ref|ZP_01451425.1| DNA-binding response regulator [Mariprofundus ferrooxydans PV-1]
 gi|114553210|gb|EAU55608.1| DNA-binding response regulator [Mariprofundus ferrooxydans PV-1]
          Length = 230

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 11/160 (6%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R +   P++ ++   +    ++ F +G DD + KP H  E+L R+ A+ RR   V+    
Sbjct: 68  RKNIATPVLILTARGAWHEKVEGFRAGADDYLTKPFHFEELLVRLQALIRRASGVAGANI 127

Query: 127 ETGPIRVFSDGR-----DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             G +++  + +     D +       L   E R+L Y+M +  +  + T +   +Y   
Sbjct: 128 VIGNLQLDEESQSAIWDDAQAGLRHIELTGIEFRLLRYMMLHPKRVFSATHLVEHVYDFN 187

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE  E NV+E ++S+LRKKL  ++    + ++R  GY +D
Sbjct: 188 DEK-ESNVIEVYVSRLRKKLAKEV----ICTRRGQGYYLD 222


>gi|332307619|ref|YP_004435470.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174948|gb|AEE24202.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 3/130 (2%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           SG DD + KP    E+ AR+ ++ RR   +  N+R E     +    +      +   L 
Sbjct: 93  SGADDYLTKPFSFDELSARLVSLMRRGPATHANDRIEINDFVLNLQTKSLSYHQQDIELT 152

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
             E +I+E +  NR + V   ++   + G +D    +N +E+H+S  RKK +N     P+
Sbjct: 153 PNEYKIIECMFLNRDRVVTSERLSEYLSGNYDH-TSKNAIEAHLSSARKKAKNIGASLPI 211

Query: 211 DSKRFLGYSI 220
            SKR  GY I
Sbjct: 212 KSKRGFGYKI 221


>gi|325297180|ref|YP_004257097.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
 gi|324316733|gb|ADY34624.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +L+  + +   + V ++   D  S++  +   D G DD + KP H  E+ AR+ +
Sbjct: 57  GNGLDLLKELQALGKRTNVIILSAKD--SIEDKVVGLDLGADDYLPKPFHLAELHARLKS 114

Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++RR  +   ++ + G I V+ D     + G+   L R+E  IL Y M+  G+ V K  +
Sbjct: 115 LFRRSQREGEHKMQVGNIEVYPDQFRVMINGKQVELNRKEYDILYYFMSRPGRLVNKNTL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
             +++G   D+    + + + I  LRK+L++
Sbjct: 175 AESVWGDHIDQVDNFDFIYAQIKNLRKRLKD 205


>gi|309774605|ref|ZP_07669630.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917636|gb|EFP63351.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 15/209 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   + D       ++G  +  F +S +  E+++++ R D++ ++  +        
Sbjct: 6   LVLDDEKEIADLVALYLNNEGYEVHKFYDSRDALEYMKNN-RVDLALLDVMMPEISG--F 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR     P+I ++        +     G DD + KP +  E++ARV A  RR K 
Sbjct: 63  EICKIIREKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122

Query: 122 SNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N   E   +  F      +D     +  EV  L   E  IL YL  N+G+ +   ++F 
Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNKGRVITSEELFE 182

Query: 176 AIY--GLFDEAVEENVVESHISKLRKKLR 202
           A++    FD     N V  HI +LR+K+ 
Sbjct: 183 AVWKEKYFD---SNNTVMVHIRRLREKMH 208


>gi|297537263|ref|YP_003673032.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297256610|gb|ADI28455.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 221

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-E 127
           A+  +P++ ++   ++   +   ++G DD + KP    E++AR+ A+ RR         +
Sbjct: 69  ANLALPVLVLTARDTVADRVIGLNAGADDYLIKPFDLDELIARLNALLRRSAGQVTLTLQ 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G I +          G++  L  RE  +   L+ + G+  ++ Q+   +YG + E VE 
Sbjct: 129 HGDIELTPSTHQVSKNGQIVELAAREFSLFHELLLHAGRVQSREQLEQHLYG-WGEEVES 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           N VE HI  LRKKL + L    + + R +GY ID
Sbjct: 188 NSVEVHIHHLRKKLGSAL----IRTIRGVGYVID 217


>gi|296330321|ref|ZP_06872802.1| two-component response regulator (YvcQ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676074|ref|YP_003867746.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152589|gb|EFG93457.1| two-component response regulator (YvcQ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414318|gb|ADM39437.1| two-component response regulator (paired with YvcQ) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 237

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR  S  P+I IS        +   ++G DD + KP H   ++A++ ++ RR      
Sbjct: 65  RQIRTISNAPIIFISARTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYS 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L   +   E G + V+ D  + E         ++E ++L   +    K V++ ++  A
Sbjct: 125 PSLSQESRIVELGGLTVYPDQNEAEWNSTRILFSQKEFQLLSIFVREHKKIVSRDELLEA 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   D  V++N +  ++++LRKKL N    D + + R  GY    N
Sbjct: 185 LWDDVD-FVDDNTLTVNVNRLRKKLENAGLKDCISTIRGQGYQFQVN 230


>gi|255318782|ref|ZP_05360008.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262378954|ref|ZP_06072111.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255304038|gb|EET83229.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262300239|gb|EEY88151.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 15/166 (9%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I +    +P++ IS    L   +D  + G DD + KP    E+LAR+ A+ RR  ++
Sbjct: 64  LKQIRQQKPALPVLIISARDQLHNRVDGLNQGADDYLVKPYEFDELLARIQALLRRSTIT 123

Query: 123 NNRAETGPIRVFSDG---RDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIF 174
           + + ET  +++   G    D E    +F      L +RE  IL  LM+   K  +++ + 
Sbjct: 124 SIQTET--VQILQHGDLILDLEQHSALFKNEHIDLSKREWAILIPLMSYPYKIFSRSSLE 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y + D  +  N +E +I      LR KLG D + + R LGY +
Sbjct: 182 DKLYDI-DSEINSNTIEVYI----HHLRTKLGKDFIRTIRGLGYRL 222


>gi|322421457|ref|YP_004200680.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320127844|gb|ADW15404.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R+IR  S VP+I ++        +   + G DD + KP   RE+ ARV A+ RR  
Sbjct: 62  LELCRLIRQTSSVPIIFLTARTDEIDRIVGLELGADDYITKPFSPREVSARVKAVLRRTS 121

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N   + G   V    R     G +  L R E  +L+  +   G   ++ Q+   ++ 
Sbjct: 122 NPGNAMSSPGTFSVNESKRQISYFGRMLALSRYEYEMLKTFIRRPGHVFSREQLMQLVWE 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              E   +  +++HI  +R KL+  +   +P+ + R  GY++
Sbjct: 182 -NPECSLDRTIDAHIKNIRAKLKKIQPDREPIVTYRGTGYAL 222


>gi|167903136|ref|ZP_02490341.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
          Length = 260

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           VP+I +S+       ++ F +G DD V KP    E LAR+AA+ RR     +   E G I
Sbjct: 77  VPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRRKGHAVSGTIEIGGI 136

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVV 190
            +    +   + GE   +   E  ILE +  + G  V +  + + I+G   DEAV  + +
Sbjct: 137 AIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIWGRSIDEAVSRS-L 195

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRF--LGYSIDW 222
           ++H+ ++R KL+   G   V  +    LGY ++W
Sbjct: 196 DTHVYRIRHKLKVH-GVSNVSLRSVYNLGYRLEW 228


>gi|160940959|ref|ZP_02088298.1| hypothetical protein CLOBOL_05850 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436049|gb|EDP13816.1| hypothetical protein CLOBOL_05850 [Clostridium bolteae ATCC
           BAA-613]
          Length = 235

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 37/234 (15%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKVL----------- 61
           GY  L G+D   +  +N  + E+   Q +A   +   E+ ++     +L           
Sbjct: 3   GYHILLGEDEPDILEYNREQLEQRGYQVTAVSTLGQAESCVLRDNPDLLVLDVMMPDGSG 62

Query: 62  -ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L R +R   Q P++ ++        +    +G DD + KP    E+ AR+ A  RRL+
Sbjct: 63  VDLCRRLREQFQGPILFLTSLGESSQIVQGLRAGGDDYITKPYDIEELAARIEAHLRRLE 122

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                                R + DGRD         L  +E R+L  LM NRG+ +  
Sbjct: 123 RRGGEDIHQGGSRLYLNVKSQRAYLDGRD-------MLLKPKEYRLLAALMRNRGRYMES 175

Query: 171 TQIFSAIYGLFDEAVEENV--VESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220
            +++  I+   D A   ++  V  HIS LRKKL++  G     ++ KR LGY +
Sbjct: 176 GELYREIW---DMAPNRDIRTVWVHISNLRKKLQDADGELIADIECKRALGYKL 226


>gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM
           273]
 gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family
           [Chlorobium luteolum DSM 273]
          Length = 232

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 12/166 (7%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +R A S VP+I ++   +L   +    +G DD V KP    E+LAR+     R 
Sbjct: 60  IEVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARI-----RA 114

Query: 120 KVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++  N   TGP+   +   DPE            L  +E  +LEYL+ N  +   +++I 
Sbjct: 115 RLRQNTPTTGPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRII 174

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++ +  +A + +V++ +++ LR+KL        + + R +GY I
Sbjct: 175 EHVWDIHFDA-DTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVI 219


>gi|163938574|ref|YP_001643458.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860771|gb|ABY41830.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRNKLR-KVNF-PIDHHLKTVYGVGYRW 220


>gi|329922845|ref|ZP_08278361.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941618|gb|EGG37903.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 239

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR H+  P+I IS   +    L     G DD + KP +  E++AR+ AI RR +
Sbjct: 64  FELCTEIRKHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQR 123

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       N   + G +    +     V+G+      +E  +L +   +        Q++
Sbjct: 124 IMENALQQNTAYDYGHLSYHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTVQLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G  D   EE  V  HISKLRKK+
Sbjct: 184 ELVWG-NDVFGEEKTVTIHISKLRKKI 209


>gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP++ ++   ++   ++  D+G DD + KP    E+LARV A  RR+ 
Sbjct: 63  LEVARRIRKTSNVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRV- 121

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                A TG IRV       +GR+    G    L  +E  +LE L  + GK  ++ +I  
Sbjct: 122 ---TPAITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NVV+ +I  LRKKL        + + R +GY +
Sbjct: 179 KVWPGYQGG--SNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 221


>gi|229182235|ref|ZP_04309517.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228601250|gb|EEK58789.1| DNA-binding response regulator [Bacillus cereus 172560W]
          Length = 223

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 10/162 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+  ++   S    L   + G DD + KP +   +LARV  I RR   +
Sbjct: 63  ICREIRKTSDVPIFMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +T  I ++ D            Q +   L + E +IL  L+ NRG  V +  +   
Sbjct: 120 SGDFKTNHILIYRDFTLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++   D  V+++ +  +I++LRKKL      +P+ ++R LGY
Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLEEIGIENPIATRRSLGY 220


>gi|239827301|ref|YP_002949925.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239807594|gb|ACS24659.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 4/144 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123
           IR  S VP++ ++        +     G DD + KP    E++AR+ AI RR    K  N
Sbjct: 69  IREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHNKQKN 128

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                GP+ +   GR   V G+   L  +E  +L +L  + G+  ++  + + ++G +D 
Sbjct: 129 EDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG-YDY 187

Query: 184 AVEENVVESHISKLRKKLRNKLGF 207
                 V++HI  LR KL+    F
Sbjct: 188 TGNARTVDTHIKTLRMKLKQASDF 211


>gi|53719681|ref|YP_108667.1| putative two component system response regulator [Burkholderia
           pseudomallei K96243]
 gi|53725473|ref|YP_102580.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76810696|ref|YP_333145.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|121600852|ref|YP_992686.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|126441806|ref|YP_001058598.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126448655|ref|YP_001080202.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|167720025|ref|ZP_02403261.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167816248|ref|ZP_02447928.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|254197798|ref|ZP_04904220.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254260652|ref|ZP_04951706.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|52210095|emb|CAH36069.1| putative two component system, response regulator [Burkholderia
           pseudomallei K96243]
 gi|52428896|gb|AAU49489.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76580149|gb|ABA49624.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|121229662|gb|ABM52180.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|126221299|gb|ABN84805.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126241525|gb|ABO04618.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|169654539|gb|EDS87232.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254219341|gb|EET08725.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 260

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           VP+I +S+       ++ F +G DD V KP    E LAR+AA+ RR     +   E G I
Sbjct: 77  VPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRRKGHAVSGTIEIGGI 136

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVV 190
            +    +   + GE   +   E  ILE +  + G  V +  + + I+G   DEAV  + +
Sbjct: 137 AIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIWGRSIDEAVSRS-L 195

Query: 191 ESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++H+ ++R KL+ + +    + S   LGY ++W
Sbjct: 196 DTHVYRIRHKLKVHGVSNVSLRSVYNLGYRLEW 228


>gi|154247445|ref|YP_001418403.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161530|gb|ABS68746.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 238

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 20/163 (12%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------- 118
           R H+  P++ +S    +   +    +G DD + KP    E+LARV A+ RR         
Sbjct: 81  RGHT-TPVLILSALGQVDDRVQGLRAGGDDYLPKPYAFTELLARVEALSRRGVSQGAETV 139

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KVS+   +    RV   G++        PL  RE R+LEYL+ + G+ V +T +   ++
Sbjct: 140 YKVSDLELDRLAHRVTRSGKE-------IPLQPREFRLLEYLLRHAGQVVTRTMLLENVW 192

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              FD   + NV++ H+S+LR K+        + + R  GY +
Sbjct: 193 DYHFDP--QTNVIDVHVSRLRSKIDKGFDVPLIHTVRGAGYMV 233


>gi|329947016|ref|ZP_08294428.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526827|gb|EGF53840.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 19/155 (12%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P+I ++   S+   +   + G DD + KP    E+LAR+     R+++    A    +R+
Sbjct: 75  PVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARI-----RVRLRPEAAGADQMRL 129

Query: 134 FSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
                      R   ++G    L  RE  + E  M + G+ +++ Q+ SA++GL FD   
Sbjct: 130 THRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSAVWGLDFDPG- 188

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             NVVE ++S     LRNKLG D V++ R +GY +
Sbjct: 189 -SNVVEVYVS----YLRNKLGRDRVETVRGMGYRL 218


>gi|304438797|ref|ZP_07398724.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372720|gb|EFM26299.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           +IIR +S+VP++ IS        +   D G DD + KP     +  ++ A+ RR    + 
Sbjct: 69  KIIRKNSKVPILFISAADENLNLIMAMDLGADDYLTKPFELELLQIKIRALLRRAYEYIE 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                   IR+  D      + +   L + E +ILE L+   GK V + +I   I+   D
Sbjct: 129 TRNIFYKDIRLDCDKMIISRENKEIELTKNEFKILEILLEKPGKVVNRDEIIDKIWQT-D 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +++N +  ++ +LRKKL +   F+ + +K+ +GY +
Sbjct: 188 SYIDDNTLTVNVMRLRKKLEDINIFELIKTKKGVGYYV 225


>gi|228471212|ref|ZP_04056025.1| transcriptional regulatory protein ResD [Porphyromonas uenonis
           60-3]
 gi|228307027|gb|EEK16109.1| transcriptional regulatory protein ResD [Porphyromonas uenonis
           60-3]
          Length = 233

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 8/154 (5%)

Query: 57  GEKVLELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G    +L  +IR   ++  P+I ++   +    L  F+ G DD + KP   +E+ AR+ A
Sbjct: 60  GMNGFKLAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQA 119

Query: 115 IYRRLKVSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           I  R   S      ++ E G + +  D +   V GE+  L ++E  IL  L  + GK  +
Sbjct: 120 ILMRFLQSGPDFGESQIEIGTLLIDLDAKQVFVHGELIELTKKELEILVLLARDPGKVFS 179

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + +I   ++   D  V E  ++ HI+++RKKLR+
Sbjct: 180 REEILDRVWR-EDVFVLERTIDVHITRIRKKLRS 212


>gi|224584977|ref|YP_002638776.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224469505|gb|ACN47335.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R      Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 121 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+    KLG + + +   +GY++
Sbjct: 181 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 216


>gi|210610549|ref|ZP_03288475.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787]
 gi|210152408|gb|EEA83414.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 12/173 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L + + IR H   P++ ++        +  F +G DD + KP    E+ AR+AA  
Sbjct: 58  GMDGLTVCQQIREHIACPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHL 117

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR      R     +R F +       R   +     PL +RE  I+E L  N G+   +
Sbjct: 118 RR---EQRRQNNSAVRFFGELILDYSARTVTINNLNIPLSKREFEIVELLSLNAGQVFDR 174

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +I+  ++GL  +   + ++E HI K+R K       + +++    GY   WN
Sbjct: 175 ERIYELVWGLDGDGNSDTIME-HIRKIRAKFAAHTLHNYIETVWGCGYR--WN 224


>gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
 gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
          Length = 248

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 13/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  +  
Sbjct: 67  RRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPTVT 126

Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             ET            G + V ++ R     GE   L   E  +LE L    GK V + +
Sbjct: 127 VTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVPRAE 186

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201
           I   ++G     A +  VV+ ++++LR KL
Sbjct: 187 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 216


>gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola
           F0402]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 10/163 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP+I ++        +   DSG DD + KP    E+LAR+ A+ RR +
Sbjct: 61  LEVLRRIRKTSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIRRNE 120

Query: 121 VSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V      T  +++ +   DP      V  +   L + E  +L+  + N+   +++ +I  
Sbjct: 121 VRG----TSVLKLRAIELDPAAMKVMVNKKHTILSKTEYLLLKTFIENKNTVLSRDRIIG 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++G  +  ++EN V+ ++  LR K+  K G + + + R +GY
Sbjct: 177 EVWG-ENYYIDENSVDVYVRHLRSKIDEKTGEEYISTVRGVGY 218


>gi|323703748|ref|ZP_08115387.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531272|gb|EGB21172.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 5/162 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+++    V +I ++    +   +   + G DD + KP    E+LAR+ A  R  + 
Sbjct: 70  EVCRMLKKMDNVAVIMLTAKDEVDDRVKGLNLGADDYMIKPFSFEELLARIYARIRN-QF 128

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N   E   GP  +    ++      V  L   E  +L++L+ N G  ++K  I   ++G
Sbjct: 129 PNLFGEVVIGPFHIDDRRKEIRFADRVLELSPTEYELLKFLILNHGLVLSKAMILDKVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   EEN+VE +I  LR KL +K     + + R  GY +D
Sbjct: 189 -YDFGGEENIVEVYIRSLRDKLNDK-NHQLIRTLRGSGYRVD 228


>gi|319399988|gb|EFV88230.1| response regulator [Staphylococcus epidermidis FRI909]
 gi|329736431|gb|EGG72700.1| response regulator receiver domain protein [Staphylococcus
           epidermidis VCU045]
          Length = 221

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127
           S +P+I ++   +L T L  F  G  D + KP +  E++ R+  +  +     ++ N  +
Sbjct: 69  SNIPIIFLTAKDNLDTRLKCFSLGAKDYLPKPFYMEELIIRIKNVLNQSHSQSLTPNIKK 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           T  + ++ D    +V      + ++E  I++ L  N     +K QI+ +I    ++    
Sbjct: 129 TKELIIYYDTYRIDVNNMTIDITKKEFEIIKLLSLNPQYYFSKEQIYDSIN--LNKTGNT 186

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            VV  HI K+RKKL     F+ +D+K  +GY
Sbjct: 187 QVVAEHIRKIRKKLSCYSRFEYIDTKWGVGY 217


>gi|304440331|ref|ZP_07400220.1| response regulator VanR [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371083|gb|EFM24700.1| response regulator VanR [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 227

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I +S     +T +     G DD + KP    ++LARV A  RR +      +   ++
Sbjct: 72  IPIIVLSAKIDKETRIGVLKDGADDFITKPFDFDDVLARVEANIRRYRDFTKEIKKLEVK 131

Query: 133 VFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
                 + E   +  E   L   E +IL+  + N  K   K  I+ A++  +  A +E++
Sbjct: 132 DLKYNYEEECFYLYDEPLKLTMVESKILKLFLENPKKIFTKKNIYEAVWEDY-FAADEDI 190

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +HIS +R+K++NK   + +++   +GY ++
Sbjct: 191 INAHISNIRRKIKNKTKEEYIETLWGIGYRLN 222


>gi|291544863|emb|CBL17972.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 200

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 21/153 (13%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR     P++ ++        +   + G DD + KP   RE++AR+    RR K +    
Sbjct: 65  IRQKENCPVVFLTARDDEADIVHGLELGADDYITKPFRLRELIARIRVQIRRSKGNTPLP 124

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +T                    L   ER++++YL  N G+ V + QI + ++    E V+
Sbjct: 125 DT--------------------LTATERKLVQYLQINSGRVVTREQILNCLWDQHGEYVD 164

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +N +  HI +LR+KL +  G   + + R +GY 
Sbjct: 165 DNTLSVHIRRLREKL-DADGVQHIRTVRGIGYQ 196


>gi|237740075|ref|ZP_04570556.1| two-component response regulator [Fusobacterium sp. 2_1_31]
 gi|229422092|gb|EEO37139.1| two-component response regulator [Fusobacterium sp. 2_1_31]
          Length = 236

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           DV  ++  L  K  K  EL +  R  +  P+I I+   S+   ++  D G +D + KP  
Sbjct: 59  DVVLLDLMLPKKSGK--ELCQEFRKLNNTPIIVITAKDSILDKVELLDLGANDYICKPFA 116

Query: 105 HREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
             E+LAR+    R  +  V         I++    +   ++ E   L + E  ILEY M 
Sbjct: 117 MEELLARIRVATRNKENFVDKQFYLEKDIKLDLSAKRVYLREEEINLTKTEFLILEYFMK 176

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           N+G   ++ +I   ++G +D   EE +V+ +I+ LRKK+
Sbjct: 177 NKGLSCSREKIIIDVWG-YDFDGEEKIVDVYINSLRKKI 214


>gi|229124382|ref|ZP_04253570.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228659034|gb|EEL14686.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL Y M N+G  + + Q+ S
Sbjct: 124 KQLLENEEDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|239817224|ref|YP_002946134.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239803801|gb|ACS20868.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 226

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 12/149 (8%)

Query: 63  LPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           LPRI        +R+HS  P+I ++        L   D G DD V KP   RE++ARV  
Sbjct: 55  LPRIGGLRVLEQVRSHSDHPIIVLTARTREADRLRGLDLGADDYVCKPFSPREVVARVNT 114

Query: 115 IYRRLKVSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR       A   P   F        ++G +  L  RE  +L+ L    G+  +++ +
Sbjct: 115 VLRRHAQRQRIAMASPSVAFGGSAHSVRIEGRLLALTGRELNLLQALSREPGRVFSRSAL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKL 201
             A +    D  V E  V+ HI  LR+KL
Sbjct: 175 LEAAFADALD--VNERAVDGHIKNLRRKL 201


>gi|205354093|ref|YP_002227894.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273874|emb|CAR38875.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326629210|gb|EGE35553.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R      Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+    KLG + + +   +GY++
Sbjct: 181 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTMHGIGYTL 216


>gi|167950309|ref|ZP_02537383.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 170

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 4/132 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA--ETG 129
           +P++ ++   S Q  ++  + G DD ++KPI     LARV A+ RR  ++S  R   E G
Sbjct: 13  IPVLFLTHRDSEQDIVEALELGADDFLSKPISQPIALARVGALARRNARISGRRGVLELG 72

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
             R+  + +    QGE   L  +E ++   L  N G+ +++  +   ++G+    +    
Sbjct: 73  HFRLERESKTLLYQGEDRGLTEKEFQLAWILFCNVGRLLSRDHLLETVWGV-GPGLMTRT 131

Query: 190 VESHISKLRKKL 201
           V++H+S+LR+KL
Sbjct: 132 VDTHMSRLRRKL 143


>gi|170722192|ref|YP_001749880.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760195|gb|ACA73511.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 220

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 26/219 (11%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L ++GY   +  DG+S  G ++L+ E +       D+  ++  L   G   +EL R +R
Sbjct: 19  GLRQEGYTLDWLRDGLS--GLHALQHEMF-------DLVILDLGLPRLGG--IELLRRLR 67

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           A    +P++ ++   + +  +   D+G DD + KP    E+ AR+ A+ RR   S  RA+
Sbjct: 68  AGGDSLPVLILTARDATEDRITGLDAGADDYLVKPFDLNELKARLRALLRR---SAGRAK 124

Query: 128 TGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              I       DP  Q     G    L  +E R+L  L+A  GK   + ++   +YG +D
Sbjct: 125 V-LIEHAGVSLDPATQQVHYNGVPVVLTPKEYRLLHELLAQPGKVFTRERLTQLLYG-WD 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  E N +E +I  LRKKL N L    + + R +GY ++
Sbjct: 183 EEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217


>gi|157962629|ref|YP_001502663.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157847629|gb|ABV88128.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 3/136 (2%)

Query: 67  IRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +RA+ +  P++ ++ + S+   L+ F SG DD + KP  +RE++AR+ A+  R      R
Sbjct: 67  LRANGADTPILFLTAFSSIDNKLEGFASGGDDYLAKPFDNRELIARITALSGRKSSHVKR 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            +   + +  + +    QG+   L      +LE LM    + V++  + + ++G  DE  
Sbjct: 127 LDIAGLIMNCEQQQVSYQGQTIELTPACYTLLEMLMRASPEVVSRQSLENKLWG--DEPP 184

Query: 186 EENVVESHISKLRKKL 201
             NV+++HI  LR+ L
Sbjct: 185 SSNVLKAHIYYLRRAL 200


>gi|91775660|ref|YP_545416.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91709647|gb|ABE49575.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 223

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++ +G        G +++   +      +  +   D+  ++  L   G    
Sbjct: 3   ILVVEDDAILAEGTCESLSKAGYAVDLAETGTKANAMMEAGHYDMLLLDIGL--PGMDGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R H+  +P++ IS    +   +   D G DD + KP    E+ AR  A+ RR  
Sbjct: 61  EVLRRLRKHNNSIPVLIISARDDVDFRIYGLDLGADDFMLKPFVLAELHARTRALLRRHT 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S  N    G + V    +   V GE   L  RE  +L YL+ N GK V K  I   +  
Sbjct: 121 LSERNTLACGKLMVDLGAQRASVNGEPIELSIREWDVLVYLLRNLGKVVRKEAIIETLCD 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +   +  N VE +IS+LR KL
Sbjct: 181 -WKTDISLNAVEVYISRLRSKL 201


>gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis]
          Length = 238

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R H+ VP++ ++        +     G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  IEVCRRMRNHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFL 122

Query: 121 V--SNNRAETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  S +R++   +  F     D +   V   G+   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           +F   +   D+ +E +N V  HI +LRKK+
Sbjct: 183 LFRNAWS--DQYIEDDNTVMVHIRRLRKKI 210


>gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 248

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 13/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  S  
Sbjct: 67  RRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPSIT 126

Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             ET            G + V ++ R     GE   L   E  +LE L    GK V + +
Sbjct: 127 VTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVPRAE 186

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201
           I   ++G     A +  VV+ ++++LR KL
Sbjct: 187 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 216


>gi|326562467|gb|EGE12785.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 46P47B1]
 gi|326564282|gb|EGE14512.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 103P14B1]
 gi|326567216|gb|EGE17336.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 12P80B1]
 gi|326568279|gb|EGE18361.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC8]
 gi|326569979|gb|EGE20026.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC1]
 gi|326570061|gb|EGE20107.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC7]
 gi|326572915|gb|EGE22900.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis CO72]
 gi|326573839|gb|EGE23792.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis O35E]
 gi|326574741|gb|EGE24677.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 101P30B1]
          Length = 230

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 82/172 (47%), Gaps = 6/172 (3%)

Query: 52  FLIGKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
           +++  GE  ++  R ++   A + +P+I ++        +   D+GVDD + KP   RE+
Sbjct: 54  WMMPHGESGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTREL 113

Query: 109 LARVAAIYRRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           ++RV A+ RR  +   +   + G + + +  +     G    +   E R+L + + +  +
Sbjct: 114 ISRVKAVLRRTGIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSER 173

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              + QI  A++G  +  ++E  ++ HI +LRK L        + + R  GY
Sbjct: 174 AYTRAQILDAVWG-GNVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGY 224


>gi|306843562|ref|ZP_07476163.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO1]
 gi|306276253|gb|EFM57953.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO1]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +     G DD V KP    E+LARV A+ R
Sbjct: 64  IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         LKV +   +    RV+   ++ EV      L   E R+LEY M + G+  
Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++Q+   ++G  D  V++  V+ H+ +LRK +      DP+ + R  GYS
Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAVDPIRTVRGAGYS 226


>gi|308069059|ref|YP_003870664.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Paenibacillus polymyxa
           E681]
 gi|305858338|gb|ADM70126.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Paenibacillus polymyxa
           E681]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 25/151 (16%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +IR H+ VP+I IS   ++   +     G DD + KP   +E+ AR+ A++RR++++   
Sbjct: 66  LIRKHTDVPIIVISTENNISERIRTLTLGADDYICKPFSMQELKARIEALFRRIEIT--- 122

Query: 126 AETGPIRVFSDGRDPEVQ-GEVFPLPRR--------------ERRILEYLMANRGKRVAK 170
                 R+   GR PE + G    L RR              E  +++    NRG   ++
Sbjct: 123 ------RLQGRGRAPEPETGITLDLARRMITVNGQNVETTYSEFELMKLFYLNRGIVFSR 176

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             +  A+ G  D  + E  V+ HI+ LR+K+
Sbjct: 177 YALIQALRGT-DSFINERAVDVHINHLRRKI 206


>gi|319763684|ref|YP_004127621.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330824053|ref|YP_004387356.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317118245|gb|ADV00734.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329309425|gb|AEB83840.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 236

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 31/211 (14%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65
           D +L   GY  L  + G  L+G   L       +S   D+  ++  L  + G++VLE   
Sbjct: 26  DISLRSQGYATLLAETG--LQGLALL-------ASQGADIVVLDLGLPDRDGKEVLE--- 73

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            +R  S+VP+I ++     +  +   D+G +D V KP    E++AR+ A  R   +S   
Sbjct: 74  ELRQWSRVPVIVLTVRSGEEEKVALLDAGANDYVTKPFGIGELMARIRAFLRTTALSG-- 131

Query: 126 AETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            E GP  V+ DG        R   ++G+   L R+E  +L  L    G+ V +TQ+   +
Sbjct: 132 -EEGP--VYDDGTLCIDLARRKVHLRGQAVALTRKEFALLALLARQPGRLVTQTQLLREM 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           +G      +E+    ++  L  KLR+KLG D
Sbjct: 189 WG---PTHQEDA--HYLRVLVGKLRHKLGDD 214


>gi|297587723|ref|ZP_06946367.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297574412|gb|EFH93132.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 5/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA    P++ ++     +  ++    G DD + KP    E+LAR+ A  RR K   + +
Sbjct: 66  IRAKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGAAELLARIEAHLRREKRERHTS 125

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G IR      +  V  +   L + E +I E L   +G+  ++ QI+  I+G FD   
Sbjct: 126 LNLGEIRFDLSSNEVFVGDKKVHLTKSEYQISELLAKRKGQVFSREQIYELIFG-FDGIG 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + + +  HI  +R K + K G +P+++   +GY   WN
Sbjct: 185 DASAISEHIKNIRSKFQ-KYGKNPIETVWGIGYK--WN 219


>gi|206577736|ref|YP_002236556.1| transcriptional regulatory protein QseB [Klebsiella pneumoniae 342]
 gi|288933539|ref|YP_003437598.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290511402|ref|ZP_06550771.1| DNA-binding transcriptional regulator QseB [Klebsiella sp. 1_1_55]
 gi|206566794|gb|ACI08570.1| transcriptional regulatory protein QseB [Klebsiella pneumoniae 342]
 gi|288888268|gb|ADC56586.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289776395|gb|EFD84394.1| DNA-binding transcriptional regulator QseB [Klebsiella sp. 1_1_55]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            +L++D  L+ DG  A     G S++ F + LE +  L S A  D + ++  L G  G  
Sbjct: 3   ILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYS-APYDAAILDLTLPGIDGLD 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   R    H  V ++   D  +L   ++    G DD + KP    E+ AR+ A+ RR 
Sbjct: 62  ILREWRDKGRHEPVLILTARD--ALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRA 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++    G + +  +     + GE   L  +E  +LE L+ N G+ + +  I   +Y
Sbjct: 120 HGQSSSELRHGKVSLDPNRLTASLDGESLVLKPKEFALLELLLRNAGRVLPRKLIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D+ V  N VE H+  LR+KL +  GF  + +   +GY++
Sbjct: 180 -TWDDEVSSNAVEVHVHHLRRKLGS--GF--IRTVHGIGYTL 216


>gi|171322290|ref|ZP_02911124.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171092384|gb|EDT37742.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 10/186 (5%)

Query: 41  SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           SA  D   ++  L G  G  +L   R +   +  P++ +S    +   +    +G DD +
Sbjct: 42  SASYDAITLDRMLPGADGLAILTAMRTVGIDT--PVLMLSALGDVDERIRGLRAGGDDYL 99

Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERR 155
            KP    E+ AR+  + RR + S    +T    G + +    R      +  PL   E R
Sbjct: 100 TKPFDSGELSARIEVLLRRRQASGVPQQTLLTVGALELDLISRCARRGVDEIPLLPTEFR 159

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
           +LE++M N G+ + +T +F A++G  FD     N+++ H+ +LRKK+        + + R
Sbjct: 160 VLEFMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIDVHMGRLRKKIDPPGAVPMIQTVR 217

Query: 215 FLGYSI 220
             GY +
Sbjct: 218 GSGYML 223


>gi|134282698|ref|ZP_01769401.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167739035|ref|ZP_02411809.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167894733|ref|ZP_02482135.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167911371|ref|ZP_02498462.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167919392|ref|ZP_02506483.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217423588|ref|ZP_03455089.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|226196264|ref|ZP_03791847.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|134245784|gb|EBA45875.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|217393446|gb|EEC33467.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|225931662|gb|EEH27666.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
          Length = 260

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           VP+I +S+       ++ F +G DD V KP    E LAR+AA+ RR     +   E G I
Sbjct: 77  VPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRRKGHAVSGTIEIGGI 136

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVV 190
            +    +   + GE   +   E  ILE +  + G  V +  + + I+G   DEAV  + +
Sbjct: 137 AIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIWGRSIDEAVSRS-L 195

Query: 191 ESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++H+ ++R KL+ + +    + S   LGY ++W
Sbjct: 196 DTHVYRIRHKLKVHGVSNVSLRSVYNLGYRLEW 228


>gi|15605840|ref|NP_213217.1| transcriptional regulator (PhoB-like) [Aquifex aeolicus VF5]
 gi|2982999|gb|AAC06611.1| transcriptional regulator (PhoB-like) [Aquifex aeolicus VF5]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 19/160 (11%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA--- 126
            ++P+I I+     +  L  F+ G DD + KP   +E++ARV A+ +R  KVS ++    
Sbjct: 78  KEIPVIFITAKGEEEDKLKGFELGADDYITKPFSMKELIARVRAVLKRYKKVSESKVLKY 137

Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +T   ++F DGR      EV+  P  E +IL+ LM N G+ V+++ +   ++  +
Sbjct: 138 EGVELDTERQKLFVDGR------EVYLTP-AEFKILKTLMENFGRPVSRSSLVEKLWD-Y 189

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +    E  ++ H+  +R KL    G   + + R +GY  +
Sbjct: 190 ERETTERAIDVHVKHIRDKLGKYKGL--IKTVRGVGYKFE 227


>gi|24373510|ref|NP_717553.1| transcriptional regulatory protein PhoP [Shewanella oneidensis
           MR-1]
 gi|24347813|gb|AAN54997.1|AE015637_13 transcriptional regulatory protein PhoP [Shewanella oneidensis
           MR-1]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR          +G 
Sbjct: 72  KAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVITSGE 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +++    +   +  ++  +   E  ILEYLM +  + VAK ++   IYG  D+  + N +
Sbjct: 132 LKLDLAAKQVTLGNDIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDPNTI 189

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 190 EVMVSRLRKKLTRDGIDNPIATIRGQGYKFN 220


>gi|305666817|ref|YP_003863104.1| response regulator DrrA [Maribacter sp. HTCC2170]
 gi|88709041|gb|EAR01275.1| response regulator DrrA [Maribacter sp. HTCC2170]
          Length = 232

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 7/151 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +RA    P+I ++        +   + G DD + KP   RE+LARV A+ RR  
Sbjct: 61  VEICKKLRAVKNTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVLRRTD 120

Query: 121 VSNNRAE-TGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +   + E T  I      +  D R   ++ +   L  +E  +L  + +N G+   +T++ 
Sbjct: 121 IKETKKENTASIHAEGLFIDIDKRKVLLEDDKIELSPKEFELLVLMASNPGRNYTRTELL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           + I+G   E   E+ V SHI++LR K+ + +
Sbjct: 181 NIIWGYNFEGY-EHTVNSHINRLRAKIESDM 210


>gi|65318077|ref|ZP_00391036.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  +       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWNEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 179 L-NXNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220


>gi|332799978|ref|YP_004461477.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697713|gb|AEE92170.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 17/148 (11%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L  I +     P+I ++    +   +   DSG DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LKHIRKQEIATPVILLTAKGEISDKVMGLDSGADDYLPKPFATEELLARIRALSRRKGDI 122

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                LK  +   +   +++  D +D         L  +E  +LE+LM  +    +K  I
Sbjct: 123 LPDSSLKYGDIELDALNLKLSKDSKD-------VKLTLKESELLEFLMLRKNIVTSKELI 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G FD  VE N VE +IS LRKKL
Sbjct: 176 IEKLWG-FDSEVEPNNVEVYISFLRKKL 202


>gi|319639384|ref|ZP_07994134.1| BasR protein [Neisseria mucosa C102]
 gi|317399279|gb|EFV79950.1| BasR protein [Neisseria mucosa C102]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 14/167 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I      VP++ ++    L + L+  D G DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LAQIRNGGCTVPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRR---H 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +A+T    G I +       EV G  +   L  +E  +L+ L+   G  ++++ +   
Sbjct: 120 GGQAQTLLTNGIITLNPSTHQAEVVGQEQAVMLSNKEFAVLQALLLRPGMILSRSDLEDK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IYG + E VE N V+  I  LRK    KLG + + + R +G+ +  N
Sbjct: 180 IYG-WGEEVESNAVDFLIHALRK----KLGKEAIQNVRGVGWLVAQN 221


>gi|313891209|ref|ZP_07824828.1| response regulator receiver domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120572|gb|EFR43692.1| response regulator receiver domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 216

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL + +R  S VP++ ++      T L  F+  + D V KP     ++ R+  I+R+L+
Sbjct: 61  LELLQAVRKISSVPVVMLTAMADEYTQLVSFNHQISDYVVKPFSPLILIKRIENIFRQLQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G + +F D        E   L ++E  I+ +L   +GK V + ++   ++G 
Sbjct: 121 -GDDYIRIGDVELFLDEGKVLADKEEAILTKKEYDIMTFLAKRKGKIVTRERLMKEVWGY 179

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
             E ++  V+++HI  +RKK+ N
Sbjct: 180 --EELDSRVLDNHIKNIRKKIPN 200


>gi|306820460|ref|ZP_07454096.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551535|gb|EFM39490.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 80/164 (48%), Gaps = 1/164 (0%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   ++ R ++A S  P++ ++    L   +     G D+ + KP    ++LAR+  + 
Sbjct: 57  GESGFQICRDVKAKSSCPILVLTSRDKLSDEIYSLKLGADEYLTKPFRREKLLARIENVL 116

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +R +   N  E     +  +     V G    LP+ + ++LE  + +    V+K ++   
Sbjct: 117 KRYEGRANLLERDNFLLDKNTYTLYVNGSSVVLPQNQGKLLETFLTSDRDIVSKEELSQK 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G   E ++EN ++ ++++L+K + +      +++ R LGY +
Sbjct: 177 LWGT-SEFIDENALQVNMTRLKKAMSDAKMSHKIETVRGLGYKL 219


>gi|299133242|ref|ZP_07026437.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298593379|gb|EFI53579.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 6/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131
           +P+I ++   ++++ +   D G DD + KP   RE+LAR+ A+ RR    + ++   G +
Sbjct: 73  LPVIVVTAQDNVESRIQGLDLGADDYMTKPFEMRELLARMRAVLRREGSGATSQLSNGTL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +     +    G+   L  RE  +L  L+   G  V+++ +   IYG ++E VE N +E
Sbjct: 133 HLDPATHEATYNGKTASLTSREFSLLYALLVRPGVIVSRSDLEKEIYG-WNEEVESNAIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I  +R+K    +    + + R +G+ +D
Sbjct: 192 FFIHSVRRKFDASI----IRNVRGIGWMVD 217


>gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 232

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 94/200 (47%), Gaps = 21/200 (10%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY     +DG   LE FN++          + D+  ++  +       LE+ R IR
Sbjct: 23  LTKEGYQVTVANDGEEGLEKFNAV----------KPDMVLLDVMMPRMDG--LEVCRRIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
                P++ ++        +   + G DD + KP   +E++AR+ A+ RR + ++  AE+
Sbjct: 71  KAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQTTSAAAES 130

Query: 129 GP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+   ++G F
Sbjct: 131 TEGVSEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLLDEVWG-F 189

Query: 182 DEAVEENVVESHISKLRKKL 201
           +   +   ++ H+ +LR+KL
Sbjct: 190 EYYGDSRTIDVHVKRLREKL 209


>gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33]
 gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7]
 gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407]
 gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3]
 gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           98HAH33]
 gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407]
 gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7]
 gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein,
           C-terminal [Streptococcus suis GZ1]
 gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14]
 gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3]
          Length = 234

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR +
Sbjct: 61  LEVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSE 120

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           ++  +             G + +  D    +  G+   L  RE  +L +L  + G+ + +
Sbjct: 121 LAETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY I  N
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233


>gi|27366129|ref|NP_761657.1| Two-component system response regulator QseB [Vibrio vulnificus
           CMCP6]
 gi|27362329|gb|AAO11184.1| Two-component system response regulator QseB [Vibrio vulnificus
           CMCP6]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 22/219 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           +L K G++     DG+  +       EEW        +  ++   + KG        I  
Sbjct: 19  SLEKTGWVPELSQDGI--DALYRATSEEWDAIVLDLGLPKLDGLTVLKG--------IRD 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +  
Sbjct: 69  ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             I   S D R  +V  QG+   L   E +++ Y + N  K +++T++   IY   FD  
Sbjct: 127 MQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFVHNADKVISRTELVEHIYKQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + N +E  I ++RKK+   +    + + R LGY ++ N
Sbjct: 186 -DSNTIEVFIGRIRKKIAPNI----IKTVRGLGYQLNAN 219


>gi|81240494|gb|ABB61204.1| putative 2-component transcriptional regulator [Shigella
           dysenteriae Sd197]
          Length = 232

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 58  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 117

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 118 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 177

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201
             G+ + +T I S I+G+ FD   + N V+  I +LR K+
Sbjct: 178 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKV 215


>gi|71280839|ref|YP_269426.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71146579|gb|AAZ27052.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 5/164 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++L+  R ++  S+V ++   D   +   ++   SG DD + KP    E+ AR+  + 
Sbjct: 59  GIEILKTLRRLKKQSKVLILSAKDL--VGDRIEGLLSGADDYMTKPFSFDELHARLLTLT 116

Query: 117 RR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR  L V N+       R+    +    + E   L   E +I+E L  N+ K V+  ++ 
Sbjct: 117 RRGGLLVDNDCIMLHGYRIDLQLKSLLFKTEEIELTPTEYKIIECLFLNKNKVVSIEKMS 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I G +D A+ +N +E+H+S +RKK+++     P+ +KR  GY
Sbjct: 177 EFIVGRYD-AIAKNSLEAHLSSIRKKVKHLEEQLPIKNKRGFGY 219


>gi|71908789|ref|YP_286376.1| DNA-binding response regulator CreB [Dechloromonas aromatica RCB]
 gi|71848410|gb|AAZ47906.1| two component transcriptional regulator, winged helix family
           [Dechloromonas aromatica RCB]
          Length = 226

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG + E          L ++   D+  ++  L        
Sbjct: 3   ILIVDDEPAISETLAYALRSDGFTTESCTLGAQALTLLAAGGHDLVVLDVGL--PDMSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R +S VP++ ++        +   + G DD V KP   RE+++R+ AI RRL  
Sbjct: 61  DVCRALRRYSDVPVLFLTARSDEVDRIVGLELGGDDYVAKPFSPREVVSRIRAILRRLNP 120

Query: 122 SNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               A   P       V  DG      G    L R E  +L  L+   G+ +++TQI  +
Sbjct: 121 EPRLAAAPPPTPSRFAVDRDGLRIAYHGHWLNLTRYEYLLLALLLERPGRILSRTQIMES 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++    E++E   V++HI  LR KLR  +   D + + R LGYSI
Sbjct: 181 VWQDGGESLERT-VDTHIKTLRGKLRGLRPDEDVIVTHRGLGYSI 224


>gi|149365314|ref|ZP_01887349.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|167469861|ref|ZP_02334565.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis FV-1]
 gi|218929914|ref|YP_002347789.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis CO92]
 gi|115348525|emb|CAL21464.1| two-component system response regulator [Yersinia pestis CO92]
 gi|149291727|gb|EDM41801.1| two-component system response regulator [Yersinia pestis CA88-4125]
          Length = 239

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 36  EWLQSSA------REDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           +WL + A      R+   AI    L+  G   + L R IR  S +P++ ++        L
Sbjct: 39  QWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITLCREIRRFSDIPIVMVTAKTEEIDRL 98

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVF 147
              + G DD + KP   RE++ARV  I RR     ++  +  P+ +         QG + 
Sbjct: 99  LGLEIGADDYICKPYSPREVVARVKTILRRCSQQRHQPTDDAPLLINESRFQASYQGHML 158

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            L   E R+L+ L +  G   ++ Q+ + +Y  +   V +  ++SHI  L++KL
Sbjct: 159 ELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLQRKL 211


>gi|121605634|ref|YP_982963.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594603|gb|ABM38042.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 231

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 14/167 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+IR  S +P+I ++    +   +   + G DD V KP   RE++ARV  + RR +V+
Sbjct: 63  LCRLIRKESDIPVIMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTVLRR-RVA 121

Query: 123 NNRAETGP--IRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              A T P   R+  DG       R  + QGE+  L   E  +L  L    G+  ++  I
Sbjct: 122 PPAAITPPDTARLVFDGLVLDPVTRTVQRQGELLELTSTEFDLLHLLAREAGRVFSRDDI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            S + G  +  +    V+  +S+LRKKL      D + + R  GYS+
Sbjct: 182 LSRLRG-HEAELYTRAVDIVVSRLRKKLEP---LDCIKTLRNAGYSL 224


>gi|329850817|ref|ZP_08265662.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
 gi|328841132|gb|EGF90703.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 6/179 (3%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D   ++  L GK G  VL++ R     ++ P+I ++    +   ++  ++G DD + KP 
Sbjct: 46  DAIVLDRMLPGKDGLSVLKMLRA--GGNRTPVILLTAMGGISDRVEGLENGADDYLTKPF 103

Query: 104 HHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
              E+ AR+  I RR  V         G I +    R     G+   L  RE  +LE LM
Sbjct: 104 ALSELSARLNVIMRRPAVVEVETILRVGNIEMDLRKRTVHRAGKRIELQPREVLMLEELM 163

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N  + + K  +   ++  FD     N+VE+HIS+LR KL      D + + R  GY I
Sbjct: 164 RNVHRVMTKAMLLERVWD-FDFDPHTNIVETHISRLRAKLNAGFDDDAIITVRGAGYMI 221


>gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5]
 gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 9/164 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +   Q P+I ++   S+   +   D G +D V KP    E+LAR+ A  R  +  
Sbjct: 66  LRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR--QNG 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + G    + D R  E   EV        L  RE  +L Y++ +  + + + QI S+
Sbjct: 124 TKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSS 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  +RKKL        + + R +GY+I
Sbjct: 184 VWG-FDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226


>gi|237737656|ref|ZP_04568137.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
 gi|229419536|gb|EEO34583.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
          Length = 232

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 77/142 (54%), Gaps = 3/142 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R +S VP+I ++   ++++ ++  D G DD + KP +  E+ AR+    R  K 
Sbjct: 62  EVCKELRKNSDVPIIVLTAKENIRSKVELLDMGADDYITKPFNIEELFARMRVALRNKKD 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N+ +   + +    ++  ++     L + E R+LE  + NR   +++ +I + I+G
Sbjct: 122 YQELNQLKYEDLVLDIIKKELIIEKRKVSLTKTEYRLLELFILNREITISREKIITEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +D   EE +V+ +++ LRKK+
Sbjct: 182 -YDFEGEEKIVDVYLNSLRKKI 202


>gi|167824627|ref|ZP_02456098.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
          Length = 254

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           VP+I +S+       ++ F +G DD V KP    E LAR+AA+ RR     +   E G I
Sbjct: 71  VPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRRKGHAVSGTIEIGGI 130

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVV 190
            +    +   + GE   +   E  ILE +  + G  V +  + + I+G   DEAV  + +
Sbjct: 131 AIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIWGRSIDEAVSRS-L 189

Query: 191 ESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++H+ ++R KL+ + +    + S   LGY ++W
Sbjct: 190 DTHVYRIRHKLKVHGVSNVSLRSVYNLGYRLEW 222


>gi|158340377|ref|YP_001521733.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310618|gb|ABW32232.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 222

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 86/169 (50%), Gaps = 16/169 (9%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+   +R H +++P++ ++    +Q  +   + G DD + KP    E+LARV     RL
Sbjct: 61  LEVLADLRGHGAKLPILILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRV---RL 117

Query: 120 KVSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + + +++ + P+ + +         R  +V  +   LP RE  + E    + G+ +++ Q
Sbjct: 118 RTNIHQSTSQPLTMVARNVVLDLRARKAKVHDQWIELPAREFILTEAFFQHPGQVLSRQQ 177

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++G +D     N+V+ ++  LRK    KLG D + + R +GY ++
Sbjct: 178 LLDRVWG-YDYDPGSNIVDVYVGYLRK----KLGDDLIQTVRGVGYRLN 221


>gi|126668370|ref|ZP_01739328.1| Two component Transcriptional regulator, Winged helix family
           protein [Marinobacter sp. ELB17]
 gi|126627186|gb|EAZ97825.1| Two component Transcriptional regulator, Winged helix family
           protein [Marinobacter sp. ELB17]
          Length = 259

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D+  + +      G+D  SL+    G  +L     L ++   DV  ++  L   G
Sbjct: 30  LLIIEDQVDLAENLFEFLGEDRYSLDFASDGLTALH----LLATQSYDVIVLDLML--PG 83

Query: 58  EKVLELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               ++ R IR     Q P+I ++   ++      F+ G DD + KP   RE+  R+ A+
Sbjct: 84  VNGYDICRRIRQDLQCQTPVILMTALSAMADKEKGFNCGADDYLVKPFELRELQLRIEAL 143

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +RR          G IR      +  ++G    L     R+ E L+      ++   +  
Sbjct: 144 HRRHSPQRPVLAAGNIRFDPGTLEVALRGSKTTLSGTPARLFELLVRAYPSFLSHEALTD 203

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++G      E N + +HI  LRK L+  LG   V +    GYS++
Sbjct: 204 AVWGAHHGETEGNSLRTHIYTLRKSLQVGLGNGLVKTIHGRGYSLE 249


>gi|37527064|ref|NP_930408.1| two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786497|emb|CAE15553.1| Two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 5/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +    +P++ ++    +   +   +SG DD + KP   +E+ AR+ A+ RR    
Sbjct: 63  LVRLRKRGQNLPVLLLTAKTDVSERVKGLNSGADDYLTKPFDLQELEARIRALLRRSAGV 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                T    V+ D     +  E   L  RE  +L  L   RG+ V+K Q+F  ++ L D
Sbjct: 123 LQETLTFGSLVYQDDGYFVLNDEPLALTPRELSVLTTLFHRRGRPVSKQQLFEQVFALSD 182

Query: 183 EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           EA  ++ +E ++ ++RKKL  + +G   + + R LGY ++
Sbjct: 183 EANPQS-IELYVHRIRKKLSGSNVG---ISTLRGLGYRLE 218


>gi|21388712|dbj|BAC00821.1| phosphate regulon transcriptional regulatory protein [Rhodobacter
           sphaeroides f. sp. denitrificans]
          Length = 230

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 11/154 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP+I +S        +   ++G DD V KP    E++ARV +  RR + S+     G   
Sbjct: 81  VPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRARPSS----VGLTL 136

Query: 133 VFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            F D R DPE       G++  L   E R+L   M   G+  ++ Q+   ++G  D  V+
Sbjct: 137 EFEDIRLDPETHKVHRGGQLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG-RDIYVD 195

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 196 SRTVDVHVGRLRKALCLHGGEDPVRTVRGAGYAL 229


>gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
 gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein
           SYNPCC7002_A0851
 gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
          Length = 251

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 20/214 (9%)

Query: 3   VLIDDRALVKD---------GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL 53
           ++++D A+++D         GY   F D+G +  G N L+  E+       D+  ++  L
Sbjct: 22  LVVEDEAVIRDMIVMGLEEEGYEVFFADNGRT--GLNMLQNPEFNAPDMPLDLVILDIML 79

Query: 54  IGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
                  L+L R +R   + +P++ +S   S    +   + G DD + KP   RE++AR 
Sbjct: 80  --PEVNGLDLCRFLRYQGNTIPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVARC 137

Query: 113 AAIYRRLKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            A+ RR +       N+  +   I +F +     V+GE   L  +E R+LE  M+   + 
Sbjct: 138 RALLRRQQFIRSTPKNSVRQFKDISLFPEECRVTVRGEEVSLSPKEYRLLELFMSYPRRV 197

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++ Q+   ++G  D   +   V+ HI  LR+KL
Sbjct: 198 WSRDQLIEQVWGA-DFLGDTKTVDVHIRWLREKL 230


>gi|170739881|ref|YP_001768536.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194155|gb|ACA16102.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 223

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 6/149 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPI 131
            P+I ++    +   +   ++G DD + KP    E+ ARV A+ RR   + N   T G +
Sbjct: 73  TPVIILTARDQISDRIAGLNAGADDYLIKPFDLFELTARVGAVGRRYSGNPNPLVTIGDL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    R     G+  PL  RE  + E L+      ++K Q+   +Y  FD  VE N +E
Sbjct: 133 DIDLAARSVHRAGKPVPLTAREWSLFEALVQRPHALLSKAQLEERLYA-FDAEVESNTIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ +LRK    K+G + +++ R +GY +
Sbjct: 192 VYVGRLRK----KIGAEAIETVRGMGYRL 216


>gi|124383639|ref|YP_001026518.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|167002013|ref|ZP_02267803.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|237811857|ref|YP_002896308.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|238562239|ref|ZP_00440708.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|254177831|ref|ZP_04884486.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254180149|ref|ZP_04886748.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254188440|ref|ZP_04894951.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254199507|ref|ZP_04905873.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254205822|ref|ZP_04912174.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254297982|ref|ZP_04965435.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|254358777|ref|ZP_04975050.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|124291659|gb|ABN00928.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|147749103|gb|EDK56177.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147753265|gb|EDK60330.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148027904|gb|EDK85925.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157806798|gb|EDO83968.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157936119|gb|EDO91789.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160698870|gb|EDP88840.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|184210689|gb|EDU07732.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|237506780|gb|ACQ99098.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|238522969|gb|EEP86410.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|243062258|gb|EES44444.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 261

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           VP+I +S+       ++ F +G DD V KP    E LAR+AA+ RR     +   E G I
Sbjct: 78  VPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRRKGHAVSGTIEIGGI 137

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVV 190
            +    +   + GE   +   E  ILE +  + G  V +  + + I+G   DEAV  + +
Sbjct: 138 AIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIWGRSIDEAVSRS-L 196

Query: 191 ESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++H+ ++R KL+ + +    + S   LGY ++W
Sbjct: 197 DTHVYRIRHKLKVHGVSNVSLRSVYNLGYRLEW 229


>gi|94497683|ref|ZP_01304251.1| DNA-binding response regulator [Sphingomonas sp. SKA58]
 gi|94422900|gb|EAT07933.1| DNA-binding response regulator [Sphingomonas sp. SKA58]
          Length = 236

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 7/138 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPI 131
           P++ +S     +  ++  +SGVDD + KP    E++ARV A++RR    ++ +    G +
Sbjct: 80  PVLMLSALGRSEHRVEGLESGVDDYLAKPFEPDELVARVRALWRRASRRSHESVLLFGDL 139

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190
                 R    QG   PL  +E  +  YLM + G+ V +  +   ++ L FD   + NVV
Sbjct: 140 ECHVKARTAFRQGRHLPLSPKEFELFRYLMDHAGEVVTREMLLRHVWKLSFDP--QTNVV 197

Query: 191 ESHISKLRKKLRNKLGFD 208
           + ++ +LR+KL    GFD
Sbjct: 198 DVNVGRLRRKLEE--GFD 213


>gi|17548744|ref|NP_522084.1| putative two component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
 gi|17430993|emb|CAD17674.1| putative two component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 221

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 14/203 (6%)

Query: 28  GFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           G+N+      ++ ++W+ S+  + +        G+G   LE  R   A S VP+I  S  
Sbjct: 25  GYNTTWVRRLMDAQKWMTSNTFDAIVLDLGLPDGEGHLFLEALRA--AQSDVPVIIASAR 82

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140
            +L   L   D G DD + KP    E++AR+ A+ RR    S NR   G + V    +  
Sbjct: 83  DALSERLKGLDEGADDFLVKPFPVDELIARLRAVLRRHAGQSTNRWSVGSLVVEPSQKRV 142

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
              G V  L  RE ++L  L+    + V +  +  A+Y   +  V  N +E  I      
Sbjct: 143 TQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREGNR-VSANALEVVI----HH 197

Query: 201 LRNKLGFDPVDSKRFLGYSIDWN 223
           LR KLG   + + R +GY I  N
Sbjct: 198 LRGKLGDGVIQTIRGVGYMIGGN 220


>gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 234

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 11/153 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTE 120

Query: 119 -LKVSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            + V N   +T         + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 121 LVAVDNQEEDTKLQSLQIRDLEILPDAYVAKKYGEELDLTHREFELLHHLASHLGQVITR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 212


>gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
 gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
          Length = 236

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 12/121 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAET------GPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR +     V  N  E       G +++  +  +  +
Sbjct: 95  GADDYMTKPFSPREVVARIKAILRRTEGKAEAVEENSDEMEAMILIGDLKILPESYEVYL 154

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           Q E+  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR KL 
Sbjct: 155 QDELLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKLE 213

Query: 203 N 203
            
Sbjct: 214 T 214


>gi|313887137|ref|ZP_07820833.1| response regulator receiver domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923366|gb|EFR34179.1| response regulator receiver domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 233

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 62  ELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +L  +IR   ++  P+I ++   +    L  F+ G DD + KP   +E+ AR+ AI  R 
Sbjct: 65  KLAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQAILMRS 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L    ++ E G + +  D +   V GE   L ++E  ILE L  +  K  ++ +I 
Sbjct: 125 LQGGLDFEESQIEIGTLLIDLDAKQVFVNGEPIDLTKKELEILELLARDPSKVFSREEIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++   D  V E  ++ HI+++RKKLR   G   ++   F GY +
Sbjct: 185 DRVWR-EDVFVMERTIDVHITRIRKKLRGS-GIKIINRSGF-GYCL 227


>gi|302878903|ref|YP_003847467.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302581692|gb|ADL55703.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 221

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R+ +  + +P++ ++   SL   +   D G DD + KP   +E+ AR+ A+ RR + +
Sbjct: 63  LSRLRQRGNLIPVLLLTARNSLTDRVHGLDGGADDYLAKPFELQELEARIRALLRRSQPI 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + R E G + +  +G+   +      L  RE  +L+ LM   G+ ++K  +   +    
Sbjct: 123 GHARLEVGGLCLDMEGQCATLNQVPLDLLARELNLLKILMQQAGRVISKDVLCEQLSSAG 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E +  N VE ++ +LRKK+ +  G   + + R LGY +
Sbjct: 183 EE-ISSNAVEVYVHRLRKKIES--GGVSILTLRGLGYML 218


>gi|299139323|ref|ZP_07032498.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598592|gb|EFI54755.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 226

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 38  LQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           +  + R D + ++ +L G  G +VLE  R  R   + P++ ++   ++   L  FD G D
Sbjct: 39  MMLNGRYDAALLDIYLPGMDGFEVLEQVRARRC--KTPILMLTAVDAVPKILQAFDMGAD 96

Query: 97  DVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
           D + KP     +LARV+AI RR++  V       G I +    R     G+   L R++ 
Sbjct: 97  DYLIKPFLLEILLARVSAIARRMQPAVEPPVVLAGGITLDRSRRVAIRGGKEIYLTRKQF 156

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
            +L+ LM   G   ++ Q+  A +G   + V+EN ++ +I  LR KL +K
Sbjct: 157 ELLDALMRRSGMVTSRDQLIEAGWGYLAD-VKENTLDVYIHGLRAKLEDK 205


>gi|120610179|ref|YP_969857.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120588643|gb|ABM32083.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 232

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 14/190 (7%)

Query: 28  GFNSLEFEEWLQSSAR------EDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           GF +    E   + AR       D++ ++  L   G   LE+ R  R H+  P+I ++  
Sbjct: 29  GFEAEHLAEGPAALARLTGPTPPDLTLLDIML--PGVDGLEVLRQARRHTDRPIIMLTAR 86

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDP 140
                 L   + G DD + KP   RE++ARV  + RR     +  A+  P+ +       
Sbjct: 87  VEEVDRLIGLELGADDYICKPFSPREVVARVRTVLRRSTAHPSPAAQDAPLVLDEAFWQV 146

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA--VEENVVESHISKLR 198
            ++G    L  RE R+L+ L ++ G+  ++ Q+    Y   D+   V E  ++SHI  LR
Sbjct: 147 HLRGTPVSLTPREFRLLQALASHSGRIFSRAQLLDMAY---DDTLDVNERAIDSHIKNLR 203

Query: 199 KKLRNKLGFD 208
           +KLR   G D
Sbjct: 204 RKLRAADGSD 213


>gi|258542012|ref|YP_003187445.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633090|dbj|BAH99065.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636147|dbj|BAI02116.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639202|dbj|BAI05164.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642256|dbj|BAI08211.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645311|dbj|BAI11259.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648366|dbj|BAI14307.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651419|dbj|BAI17353.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654410|dbj|BAI20337.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-12]
          Length = 243

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 21/186 (11%)

Query: 45  DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D+  ++  L G  G  V+E  R  +   ++P++ +S   ++   +    +G DD + KP 
Sbjct: 65  DIMVVDRLLPGLDGLSVIETMR--QQGIRMPVLVLSALSAVDDRVTGLKAGGDDYLTKPF 122

Query: 104 HHREILARVAAIYRRL-KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERR 155
              E++AR+ A+ RR     + +   GPI       RV+ DGR+ E+      LP RE R
Sbjct: 123 AIEELVARIEALLRRPDDTRSTKLHLGPIDMDLIERRVWRDGREIEL------LP-REFR 175

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKR 214
           +LEYLM   G+ + ++ +   ++  +      N+V+ HI KLR+K+ +  G +P ++S R
Sbjct: 176 LLEYLMRRPGQVLTRSMLLEDVWQ-YRFIPRTNLVDVHIGKLRRKI-DGPGEEPLIESIR 233

Query: 215 FLGYSI 220
             G+ +
Sbjct: 234 GTGFRL 239


>gi|255283555|ref|ZP_05348110.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM
           14469]
 gi|255265817|gb|EET59022.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM
           14469]
          Length = 226

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 3/129 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPL 149
           F  G DD + KP+++ E+  R+ A+ RR  ++N R       V  +      +      L
Sbjct: 91  FSIGTDDYMTKPVNYEELHWRIDALLRRADITNARKIVIGETVLDEATYTLSKASCSIEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P++E  +L  L++  G    K+Q+   I+G FD    E+ V++HIS+LR ++ +   F  
Sbjct: 151 PKKEFELLYKLLSYPGIIFTKSQLLDDIWG-FDSDSSEDTVKTHISRLRSRVSDFTEFQI 209

Query: 210 VDSKRFLGY 218
           +  K  LGY
Sbjct: 210 ITIKG-LGY 217


>gi|330822042|ref|YP_004350904.1| two component transcriptional regulator, winged helix family
           [Burkholderia gladioli BSR3]
 gi|327374037|gb|AEA65392.1| two component transcriptional regulator, winged helix family
           [Burkholderia gladioli BSR3]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GP 130
            VP+I ++     QT L    +G DD + KP    E+LAR+AA+ RR  V      T G 
Sbjct: 73  NVPVIVLTARDDEQTVLTALRAGADDYLVKPARAAEMLARIAAVARRYGVGGKAPLTLGA 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
             +        V G    L ++E  +  Y+  + G+ +++  + + ++G+  + V+   V
Sbjct: 133 YEIDIQRVRIAVNGAPVDLTQKEFDLAVYMFQSPGQLLSRDHLLNRVWGVHAD-VDTRTV 191

Query: 191 ESHISKLRKKL 201
           ++H+S+LRKKL
Sbjct: 192 DTHVSRLRKKL 202


>gi|322513689|ref|ZP_08066784.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
           25976]
 gi|322120497|gb|EFX92404.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
           25976]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +Q+P++ ++   S    +   ++G DD V KP   + ++AR+ A+ RR   +N+      
Sbjct: 74  TQIPILMLTARSSEDDCITCLNTGADDYVTKPFSPKVLIARIEALLRRTYQNNDVINIDD 133

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +  + +    Q +   L   E ++L + M +  K  ++ Q+   ++G  D  VE+  V
Sbjct: 134 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 192

Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +S+I +LRK L    GF+  V + R  GY
Sbjct: 193 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 220


>gi|319652817|ref|ZP_08006923.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317395394|gb|EFV76126.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 19/148 (12%)

Query: 65  RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           R+IR+HS VP+I +S  D+P+ +  ++     G DD V KP H   ++A++ AI RR  V
Sbjct: 65  RMIRSHSNVPIIFLSSRDHPTDMVMSMQL---GADDFVQKPFHFEVLIAKIQAILRR--V 119

Query: 122 SNNRAETGPIRVFSDG----RDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N  A    ++ + D         V  E     L + E  IL+ L+  + + V++  I  
Sbjct: 120 YNYSAVQNNLKTWCDAAVDFEKNTVTNESGCIELTKNEIYILKLLIERKNQIVSRDDI-- 177

Query: 176 AIYGLFDEA--VEENVVESHISKLRKKL 201
            I  L+D+   + +N +  +I++LRKKL
Sbjct: 178 -INSLWDDKRFISDNTLTVNINRLRKKL 204


>gi|319791294|ref|YP_004152934.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315593757|gb|ADU34823.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 227

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 5/165 (3%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL + +RA    VP++ ++   + Q  +     G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LELCQTLRAEGHHVPVLMLTALSNTQDKVSGLRLGADDYLTKPFAFEELLARIEALLRRG 119

Query: 120 KVSNNRAETGPIRVFSDGRD---PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    RA T  +      R+       G+   L  +E   LE LM   G+  ++ +I S 
Sbjct: 120 REMRPRATTLQVADLVLDRERMSVTRAGKPVALTAKELAFLELLMTAPGRVYSRERILSN 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  ++ +  N+V+ ++ +LR K+ +      + + R LGY +D
Sbjct: 180 VWGTNEDPL-TNIVDVYVRRLRGKIDDGHPVALLQTVRGLGYRLD 223


>gi|310639847|ref|YP_003944605.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309244797|gb|ADO54364.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 5/130 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPR 151
           G DD + KP    E+LAR+ A  R  +  +   E   GP +V    ++   Q +V  L  
Sbjct: 91  GADDYIVKPFSFNELLARIEARLRN-QFPDLLGEVVHGPFQVDDRRKEIRYQSQVLELSP 149

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
            E  +L++L+ N G  ++K++I   ++G +D   E+N+VE +I  LR+KL++K     + 
Sbjct: 150 TEYELLKFLVLNHGIVLSKSRILDRVWG-YDFGGEDNIVEVYIRSLREKLKDK-EHRVIR 207

Query: 212 SKRFLGYSID 221
           + R +GY +D
Sbjct: 208 TLRGVGYRVD 217


>gi|258645821|ref|ZP_05733290.1| phosphate regulon response regulator PhoB [Dialister invisus DSM
           15470]
 gi|260403191|gb|EEW96738.1| phosphate regulon response regulator PhoB [Dialister invisus DSM
           15470]
          Length = 226

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%)

Query: 1   MFVLIDDRALVKD--GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           +   ++D   ++D  GY AL G  G  +EGF   +        A  D+  ++  L   GE
Sbjct: 2   LIYCVEDDESIRDLVGY-ALRGQ-GYGMEGFGCADDFYKGMKKAVPDLVLLDVML--PGE 57

Query: 59  KVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             L + + IR   + +P+I ++   S    +   D G DD V KP    E+L+R+ ++ R
Sbjct: 58  DGLSILKKIREREANIPIIMMTAKSSEFDVVRGLDLGADDYVIKPFGIMELLSRIRSVLR 117

Query: 118 RL-KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R  K++ N+ E    G IR   +     V  +   +  +E ++L YL+ N+G  +++ QI
Sbjct: 118 RSGKMAENKGELLSFGTIRADRNRHVVTVDEKEVAVTLKEFQLLCYLLLNKGIVLSREQI 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
             A++ +  E +E   ++ HI  LR+KL
Sbjct: 178 MQAVWDIPFE-MESRTIDMHIMSLRQKL 204


>gi|228903599|ref|ZP_04067720.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228968205|ref|ZP_04129204.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791468|gb|EEM39071.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228856028|gb|EEN00567.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 222

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 59  EICRQIRLVKTTPIIIVTDNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSD- 117

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  GE   L +RE  +L +L+ N+   +++  + + 
Sbjct: 118 CNQQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 178 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 220


>gi|229163815|ref|ZP_04291758.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228619635|gb|EEK76518.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 -------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N+      I V    R   V      L   E  IL Y M N+G  + + Q+ S
Sbjct: 124 KQLLENENDTLAIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|222153066|ref|YP_002562243.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113879|emb|CAR42041.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 221

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I IS        +   + G DD + KP     + A++AA  RR   +    
Sbjct: 69  IRKQSTVPIIFISSSNDEMDAVMALNMGGDDYITKPFSLTILDAKIAAFLRR--ATQFAT 126

Query: 127 ETGPIRVFSDGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           ++   + +    D  +  EV    L   E +IL  L +N+G  V+K ++  +++   D+ 
Sbjct: 127 DSLSYKNYQLHFDSSLSNEVQKISLSPTEHKILSLLFSNQGAIVSKEELLKSLWD-NDQF 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +++N +  ++++LRKKL + + FD + + R +GY
Sbjct: 186 IDQNTLNVNMTRLRKKLLD-IDFDYIHTVRGVGY 218


>gi|153955658|ref|YP_001396423.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856032|ref|YP_002473154.1| hypothetical protein CKR_2689 [Clostridium kluyveri NBRC 12016]
 gi|146348516|gb|EDK35052.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569756|dbj|BAH07740.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 3/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R I+    +PLI ++     + T+  F+ G DD + KP        RVAA+ +R +
Sbjct: 61  FELCRWIKELKDIPLIFLTACDMEKDTIKGFELGADDYITKPFSVGIFRRRVAAVLKRCE 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N  N    G + V  D      + + F L   E R+++  +AN GK + +  +   ++
Sbjct: 121 KENIGNIYNDGYLMVDFDKLMVIRENKAFMLTSSEYRLMKIFVANSGKVLTRQILLQKLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                 V+E+ +  ++++LR K++NK G   + +   +GY
Sbjct: 181 DNDGNFVDEHALTVNVNRLRSKIQNK-GHKYIKTVYGMGY 219


>gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 13/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  S  
Sbjct: 67  RRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPSIT 126

Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             ET            G + V ++ R     GE   L   E  +LE L    GK V + +
Sbjct: 127 VTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVPRAE 186

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201
           I   ++G     A +  VV+ ++++LR KL
Sbjct: 187 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 216


>gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae]
          Length = 253

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 21/200 (10%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R+L  +GY     +DGV           E L+  AR+   A+   ++      LE+ R +
Sbjct: 43  RSLSFNGYSVELANDGV-----------EALEMVARDRPDALVLDVMMPRLDGLEVCRQL 91

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K  ++ A
Sbjct: 92  RSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK-PDDAA 150

Query: 127 ETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E+  +  FSD     V  EV        L R E  +LE L+AN  + + +++I   ++G 
Sbjct: 151 ESVAMS-FSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEEVWG- 208

Query: 181 FDEAVEENVVESHISKLRKK 200
           FD     N +E ++  LR+K
Sbjct: 209 FDFPTSGNALEVYVGYLRRK 228


>gi|314947787|ref|ZP_07851194.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|313645767|gb|EFS10347.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 7/140 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122
           IR  S+VP+I IS   +    +   + G DD V K      ++A++ A+ RR     ++S
Sbjct: 72  IREVSKVPIIFISSRNTNMDMIMAMNMGADDFVTKHFQIDVLIAKINALLRRSYNYTELS 131

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       I +  D    E+ GE+  L + E R+L  LM + GK +++ ++  A++   D
Sbjct: 132 SEMMSHNGITLNVDNGSMEINGEIIDLSKNEYRLLFILMKHNGKILSREKLLRALWD--D 189

Query: 183 EA-VEENVVESHISKLRKKL 201
           E  V++N +  +I++LR+K+
Sbjct: 190 ERFVDDNTLTVNINRLRRKI 209


>gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 232

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 21/200 (10%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY     +DG   LE FN +          + D+  ++  +       LE+ R IR
Sbjct: 23  LTKEGYQVTVANDGEEGLEKFNQV----------KPDMVLLDVMMPKMDG--LEVCRRIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
                P++ ++        +   + G DD + KP   +E++AR+ A+ RR + +   AE+
Sbjct: 71  KAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQTTTAAAES 130

Query: 129 GP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+   ++G F
Sbjct: 131 TEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLLDEVWG-F 189

Query: 182 DEAVEENVVESHISKLRKKL 201
           +   +   ++ H+ +LR+KL
Sbjct: 190 EYYGDSRTIDVHVKRLREKL 209


>gi|261381187|ref|ZP_05985760.1| QseB protein [Neisseria subflava NJ9703]
 gi|284795806|gb|EFC51153.1| QseB protein [Neisseria subflava NJ9703]
          Length = 225

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 14/167 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I      VP++ ++    L + L+  D G DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LAQIRNGGCTVPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRR---H 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +A+T    G I +       EV G  +   L  +E  +L+ L+   G  ++++ +   
Sbjct: 120 GGQAQTLLTNGIIMLNPSTHQAEVVGQEQAIMLSNKEFAVLQALLLRPGMILSRSDLEDK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IYG + E VE N V+  I  LRK    KLG + + + R +G+ +  N
Sbjct: 180 IYG-WGEEVESNAVDFLIHALRK----KLGKEAIQNVRGVGWLVPQN 221


>gi|254488622|ref|ZP_05101827.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
 gi|214045491|gb|EEB86129.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 11/154 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I +S        +   ++G DD V KP   RE++ARV    RR++     A TG   
Sbjct: 80  IPVIMLSARSEEVDAVRGLETGADDYVVKPYSMRELMARVRTQLRRIRP----AATGGQL 135

Query: 133 VFSD-GRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            + D   DPE        +   L   E R+L  L+   G+  ++ Q+   ++G  D  V+
Sbjct: 136 CYQDITLDPERHRVNRATQELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVWG-RDIFVD 194

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V+ HI++LRK L    G DP+ + R  GY++
Sbjct: 195 TRTVDVHIARLRKALTQHGGDDPIRTVRGAGYAL 228


>gi|188591286|ref|YP_001795886.1| chemotaxis protein CheY [Cupriavidus taiwanensis LMG 19424]
 gi|170938180|emb|CAP63166.1| putative response regulator, CheY family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +RA  + +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLKRLRARGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 120 AGGGATLMRHGPLAYDQVGRIAYLNDQMLDLSAREIGLLEILLTRSGRLVSKEQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKK+  ++G   + + R LGY ++
Sbjct: 180 E-WGEEVSNNAIEVYVHRLRKKI--EVGGIRIATVRGLGYCLE 219


>gi|163759381|ref|ZP_02166467.1| osmolarity response regulator [Hoeflea phototrophica DFL-43]
 gi|162283785|gb|EDQ34070.1| osmolarity response regulator [Hoeflea phototrophica DFL-43]
          Length = 235

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 7/169 (4%)

Query: 42  AREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           +R    AI   L+  GE  L + R +RA   Q P+I ++        +   ++G DD + 
Sbjct: 46  SRSPADAIVLDLMMSGEDGLAICRRLRAAGDQTPIIMLTARGDPIDRIVGLETGADDYLA 105

Query: 101 KPIHHREILARVAAIYRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           KP   RE++AR++A+ RR +      +++    GP+ +    R     G    L  RE  
Sbjct: 106 KPFEPRELVARLSAVLRRTRGMRDVPTDDTVTIGPLEINFSTRMVTRDGASLKLSSREFA 165

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +L  ++ +RG+ +++ Q+     G  D  V +  V+  I++LR+ L ++
Sbjct: 166 LLAAMVRSRGRPLSRAQLIERALG-RDAEVTDRAVDVQIARLRRALGDR 213


>gi|170727718|ref|YP_001761744.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813065|gb|ACA87649.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 230

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 8/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETG 129
           P++ ++   S Q  ++  D+G DD + KP    E++AR+ A+ RR   S  +A      G
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFQPEELVARLKALIRR---SAGKASPLIHNG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P  + +   + +    +  L   E ++ EY M + G+  +KT +   IY   D  ++ NV
Sbjct: 131 PFSINTSSLEVKKGERLITLSGSEYKLFEYFMLHPGEVKSKTVLTEHIYDQ-DFDLDSNV 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E  I +LRKKL     +  +++ R  GY +
Sbjct: 190 IEVFIRRLRKKLDPDNQYGLIETLRGQGYRL 220


>gi|50085344|ref|YP_046854.1| putative two-component response regulator [Acinetobacter sp. ADP1]
 gi|49531320|emb|CAG69032.1| putative two-component response regulator [Acinetobacter sp. ADP1]
          Length = 218

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 8/163 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G++VL   R  +  S  P+I I+   S+   +   D G +D + KP    E+ AR+ +  
Sbjct: 59  GDQVLLTLR--KHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHI 116

Query: 117 RRLKVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R ++   +       I + +  +  ++ GE+  L  +E ++L  +M N  + V + Q+ S
Sbjct: 117 RSMQQQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLES 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   DE +E N +E  I +LRK    K+G + + + R LGY
Sbjct: 177 TLYAWGDE-IESNAIEVFIYQLRK----KIGTNYIKTIRGLGY 214


>gi|21909780|ref|NP_664048.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|50913656|ref|YP_059628.1| response regulator CsrR [Streptococcus pyogenes MGAS10394]
 gi|56808741|ref|ZP_00366459.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71902940|ref|YP_279743.1| response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910096|ref|YP_281646.1| response regulator [Streptococcus pyogenes MGAS5005]
 gi|94987913|ref|YP_596014.1| response regulator [Streptococcus pyogenes MGAS9429]
 gi|94989788|ref|YP_597888.1| response regulator CsrR [Streptococcus pyogenes MGAS10270]
 gi|94993673|ref|YP_601771.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
 gi|139474380|ref|YP_001129096.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|3599371|gb|AAC64935.1| CsrR [Streptococcus pyogenes]
 gi|21903965|gb|AAM78851.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|50902730|gb|AAT86445.1| Response regulator CsrR [Streptococcus pyogenes MGAS10394]
 gi|71802035|gb|AAX71388.1| response regulator [Streptococcus pyogenes MGAS6180]
 gi|71852878|gb|AAZ50901.1| response regulator [Streptococcus pyogenes MGAS5005]
 gi|84578944|dbj|BAE72910.1| two-component response regulator mutated protein M3-2
           [Streptococcus pyogenes]
 gi|94541421|gb|ABF31470.1| response regulator [Streptococcus pyogenes MGAS9429]
 gi|94543296|gb|ABF33344.1| Response regulator CsrR [Streptococcus pyogenes MGAS10270]
 gi|94547181|gb|ABF37227.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
 gi|134272627|emb|CAM30894.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|190350983|gb|ACE75888.1| CovR [Streptococcus pyogenes]
 gi|190350986|gb|ACE75890.1| CovR [Streptococcus pyogenes]
 gi|190350989|gb|ACE75892.1| CovR [Streptococcus pyogenes]
 gi|190350992|gb|ACE75894.1| CovR [Streptococcus pyogenes]
 gi|190350995|gb|ACE75896.1| CovR [Streptococcus pyogenes]
 gi|190350998|gb|ACE75898.1| CovR [Streptococcus pyogenes]
 gi|190351001|gb|ACE75900.1| CovR [Streptococcus pyogenes]
 gi|190351004|gb|ACE75902.1| CovR [Streptococcus pyogenes]
 gi|190351007|gb|ACE75904.1| CovR [Streptococcus pyogenes]
 gi|190351010|gb|ACE75906.1| CovR [Streptococcus pyogenes]
 gi|190351013|gb|ACE75908.1| CovR [Streptococcus pyogenes]
 gi|190351016|gb|ACE75910.1| CovR [Streptococcus pyogenes]
 gi|190351019|gb|ACE75912.1| CovR [Streptococcus pyogenes]
 gi|190351022|gb|ACE75914.1| CovR [Streptococcus pyogenes]
 gi|190351025|gb|ACE75916.1| CovR [Streptococcus pyogenes]
 gi|190351028|gb|ACE75918.1| CovR [Streptococcus pyogenes]
 gi|190351031|gb|ACE75920.1| CovR [Streptococcus pyogenes]
 gi|190351034|gb|ACE75922.1| CovR [Streptococcus pyogenes]
 gi|190351037|gb|ACE75924.1| CovR [Streptococcus pyogenes]
 gi|190351040|gb|ACE75926.1| CovR [Streptococcus pyogenes]
 gi|190351043|gb|ACE75928.1| CovR [Streptococcus pyogenes]
 gi|190351046|gb|ACE75930.1| CovR [Streptococcus pyogenes]
 gi|190351049|gb|ACE75932.1| CovR [Streptococcus pyogenes]
 gi|190351052|gb|ACE75934.1| CovR [Streptococcus pyogenes]
 gi|190351055|gb|ACE75936.1| CovR [Streptococcus pyogenes]
 gi|190351058|gb|ACE75938.1| CovR [Streptococcus pyogenes]
 gi|190351061|gb|ACE75940.1| CovR [Streptococcus pyogenes]
 gi|254826682|dbj|BAH86623.1| response regulator [Streptococcus pyogenes]
 gi|254826685|dbj|BAH86625.1| response regulator [Streptococcus pyogenes]
 gi|254826688|dbj|BAH86627.1| response regulator [Streptococcus pyogenes]
 gi|254826691|dbj|BAH86629.1| response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|323494536|ref|ZP_08099641.1| two-component system response regulator QseB [Vibrio brasiliensis
           LMG 20546]
 gi|323311263|gb|EGA64422.1| two-component system response regulator QseB [Vibrio brasiliensis
           LMG 20546]
          Length = 219

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 12/153 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ +S   +L   ++  ++G DD + KP    E+ AR+ A  RR   S N +    I 
Sbjct: 73  TPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLRR--ASGNASPVMQIG 130

Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
             S D R  +V  QG+   L   E +++ Y M N  K +++T++   IY   FD   + N
Sbjct: 131 NLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR--DSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 189 TIEVFIGRIRKKIAPKV----IKTVRGLGYQLN 217


>gi|320529002|ref|ZP_08030094.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|320138632|gb|EFW30522.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 231

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDP 140
           S++  +   D+G DD + KP    E+LAR+ A+ RR   K+ +   E G  R+       
Sbjct: 89  SVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRSTQKIQHEVDEIGGFRLNRTANIL 148

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           E  G++  L  RE ++ + L  N G  V +  I   I+GL +  V  N ++S++  LRKK
Sbjct: 149 EKNGKMIQLSPREFQLFDLLAQNIGIVVPRDIILDRIWGL-ESDVSSNNIDSYMKMLRKK 207

Query: 201 LRNKLGFDPVDSKRFLGYSID 221
           L      + + + R +GY ++
Sbjct: 208 LDAASEGEAIKTIRGVGYKLE 228


>gi|257093580|ref|YP_003167221.1| winged helix family two component heavy metal response
           transcriptional regulator PhoB [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046104|gb|ACV35292.1| two component transcriptional regulator PhoB, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 241

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 20/218 (9%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            LV  GY  L  D         + E  E L      D++ I+  L GK    L L   +R
Sbjct: 27  TLVCGGYQPLCVD---------TAEAAEALLRETLPDLALIDWMLPGKSG--LALTGRLR 75

Query: 69  AHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSN 123
           + +    +P+I ++        +   + G DD + KP   +E++ARV A+ RR   +   
Sbjct: 76  SDARTRHLPIILLTARGEETDRVAGLEGGADDYIVKPFSPKELVARVHAVLRRCAPEFVK 135

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                GPI + +   +  V G+   L   E R+L +L+AN G+  ++ Q+   ++G  D 
Sbjct: 136 GTLCAGPIELDTVSHEARVDGQRITLTPTEFRLLRFLIANPGRVYSRQQLLDNVWG--DH 193

Query: 184 A-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +E+  V+ HI +LR  L        V++ R +GY +
Sbjct: 194 VYIEDRTVDIHIRRLRVAL-GPAAEQMVETVRGVGYKL 230


>gi|288942284|ref|YP_003444524.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288897656|gb|ADC63492.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 233

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 5/166 (3%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           W++   R D+  ++  L GK    L++ R IR  SQVP+I  +        L   + G D
Sbjct: 45  WVRRE-RPDLILLDLMLPGKDG--LDICREIRTESQVPIIMTTARVEEIDRLLGLELGAD 101

Query: 97  DVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           D V KP   RE++ARV A+ RR L      A+ GP+ +  D        +   L   E  
Sbjct: 102 DYVCKPYSPRELVARVKAVLRRTLAPEPPAADPGPLHLHRDELRVRAGDDEIELTAVEFA 161

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +LE L    G+  ++ ++   IY      V +  ++SH+ KLR+KL
Sbjct: 162 LLETLHGAPGRIFSRDRLMDRIYRDH-RVVSDRTIDSHVKKLRRKL 206


>gi|229591553|ref|YP_002873672.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363419|emb|CAY50598.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 227

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 7/169 (4%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   +++ + +R  S VP+I I+        L   D G DD + KP   RE++ARV
Sbjct: 56  LMLPGRDGMQVCQDLRGFSAVPIIMITARVEEVDRLLGLDLGADDYICKPFSPREVVARV 115

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            AI RR         + P R+  D       + G    L   E R+L     + G+  ++
Sbjct: 116 KAILRR---GPQLLSSTPARLLIDETQYRASLDGVALDLTPLELRLLSTFARSAGRVFSR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            Q+   +Y      V +  V+SHI  LR+KL     G  P++S   +GY
Sbjct: 173 DQLLDKLYS-DHRVVTDRTVDSHIRNLRRKLEQACPGETPIESLYGVGY 220


>gi|126451446|ref|YP_001065854.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|242317008|ref|ZP_04816024.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|126225088|gb|ABN88628.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|242140247|gb|EES26649.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
          Length = 260

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           VP+I +S+       ++ F +G DD V KP    E LAR+AA+ RR     +   E G I
Sbjct: 77  VPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRRKGHAVSGTIEIGGI 136

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVV 190
            +    +   + GE   +   E  ILE +  + G  V +  + + I+G   DEAV  + +
Sbjct: 137 AIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIWGRSIDEAVSRS-L 195

Query: 191 ESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++H+ ++R KL+ + +    + S   LGY ++W
Sbjct: 196 DTHVYRIRHKLKVHGVSNVSLRSVYNLGYRLEW 228


>gi|6002654|gb|AAF00081.1|AF095713_1 response regulator CsrR [Streptococcus pyogenes]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|87119735|ref|ZP_01075632.1| two-component response regulator [Marinomonas sp. MED121]
 gi|86165211|gb|EAQ66479.1| two-component response regulator [Marinomonas sp. MED121]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 28/209 (13%)

Query: 3   VLIDDRALVKDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           +L+D   LVKD Y   +   GD+ V          E  L+S  + D+  ++  L GK   
Sbjct: 18  ILVD--YLVKDNYDVKVLYRGDEAV----------ERILES--KPDLVILDVMLPGKSG- 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            + + + +R HS VP++ ++        L     G DD V KP   RE++ARV AI RR+
Sbjct: 63  -INICKELREHSNVPIMMLTARIDEMDRLVGLKVGADDYVCKPFLPREVVARVNAILRRV 121

Query: 120 KVSNNRAETGPIRVF-SDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRV-AKTQ 172
              ++  E     V+ S   D E       G+   L   E R+L+ +M +R KRV ++  
Sbjct: 122 NRIDDEEEKSSELVYRSITLDLECFKCHANGQYVELTPVEYRLLQ-IMVSRPKRVFSRES 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +    Y   D  V +  ++SH+  LRKKL
Sbjct: 181 LMQKCYK-DDRIVSDRTIDSHVKNLRKKL 208


>gi|69244815|ref|ZP_00603039.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257879132|ref|ZP_05658785.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257882060|ref|ZP_05661713.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257889963|ref|ZP_05669616.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|258615519|ref|ZP_05713289.1| DNA-binding response regulator [Enterococcus faecium DO]
 gi|260560220|ref|ZP_05832397.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|293563515|ref|ZP_06677963.1| DNA-binding response regulator [Enterococcus faecium E1162]
 gi|293569037|ref|ZP_06680349.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|294622790|ref|ZP_06701744.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|68196169|gb|EAN10599.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257813360|gb|EEV42118.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257817718|gb|EEV45046.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257826323|gb|EEV52949.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|260073787|gb|EEW62112.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|291588218|gb|EFF20054.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|291597748|gb|EFF28886.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|291604517|gb|EFF34003.1| DNA-binding response regulator [Enterococcus faecium E1162]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 7/140 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122
           IR  S+VP+I IS   +    +   + G DD V K      ++A++ A+ RR     ++S
Sbjct: 67  IREVSKVPIIFISSRNTNMDMIMAMNMGADDFVTKHFQIDVLIAKINALLRRSYNYTELS 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       I +  D    E+ GE+  L + E R+L  LM + GK +++ ++  A++   D
Sbjct: 127 SEMMSHNGITLNVDNGSMEINGEIIDLSKNEYRLLFILMKHNGKILSREKLLRALWD--D 184

Query: 183 EA-VEENVVESHISKLRKKL 201
           E  V++N +  +I++LR+K+
Sbjct: 185 ERFVDDNTLTVNINRLRRKI 204


>gi|259047168|ref|ZP_05737569.1| response regulator [Granulicatella adiacens ATCC 49175]
 gi|259036218|gb|EEW37473.1| response regulator [Granulicatella adiacens ATCC 49175]
          Length = 245

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           LQ++  E   AI   L+      LE+ R +R   Q P+I ++   S+   +   D G DD
Sbjct: 55  LQTAIDESWDAILLDLMLPEMNGLEVVRRLRQVKQTPVIIMTARDSVMDRVVGLDQGADD 114

Query: 98  VVNKPIHHREILARVAAIYRRLK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            V KP    EILAR+ A++RRL+       +   + E   + +  + R     GEV  L 
Sbjct: 115 YVVKPFEIEEILARLRALFRRLQMEEQSRNIKQTKVEYRDLVIEVENRVVRRAGEVIDLT 174

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++E  +L  LM N    +++  +   ++G  +E VE NV++ ++  +R K+
Sbjct: 175 KKEYELLLLLMENIDIVLSREILLKKVWGYKNE-VETNVIDVYVRYIRNKI 224


>gi|255526395|ref|ZP_05393308.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188390|ref|ZP_06856781.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509901|gb|EET86228.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047011|gb|EFG86454.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 222

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 5/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP+I ++        L   + G DD + KP + + +LAR+ ++ +R    
Sbjct: 63  VCREIRKVSQVPIIVVTSRDDELNELMSINLGADDFITKPYNLQILLARITSVLKR-TYG 121

Query: 123 NNRAETGPIR--VFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           N +A+    R  +++      E       L + E +IL  L+ N GK V++ +I   ++ 
Sbjct: 122 NAQADFLRYREIIYNIAASQVEFNNSKIELTKNESKILHILINNSGKIVSRDEIMKCLWQ 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              E V++N +  ++++LRKKL +      + +KR  GY
Sbjct: 182 Q-AEFVDDNTLTVNVNRLRKKLEDLGAVGYIQTKRGQGY 219


>gi|188587839|ref|YP_001922138.1| response regulator [Clostridium botulinum E3 str. Alaska E43]
 gi|188498120|gb|ACD51256.1| response regulator [Clostridium botulinum E3 str. Alaska E43]
          Length = 218

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P+I ++    L   +    SG +D + KP    E+LAR+  + RR   ++N  E   +
Sbjct: 72  NIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVLRRYSKNSNCIEFENL 131

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +++ + R  +   E   L  +E  ++  L+ N+   +++  +   I+G ++   E   ++
Sbjct: 132 KIYEEERLIKRDDETIDLTLKEFELMVLLVKNKNMALSREYLLEKIWG-YEYMGETRTID 190

Query: 192 SHISKLRKKL 201
           +HI KLRKKL
Sbjct: 191 NHIQKLRKKL 200


>gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 239

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 22/205 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L K+GY  +  +D            E+ LQ    +DV      ++       E  R IR
Sbjct: 22  TLQKEGYDVIPAEDA-----------EKALQELKEKDVDMFIVDIMLPNMDGFEFVRTIR 70

Query: 69  A---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           A   H   P+I +S        +   + G DD + KP   RE+LAR+ A++RR+++    
Sbjct: 71  AKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAVFRRMQLGTVV 130

Query: 126 AETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            E  P ++ +       D  +  V+G+   L   E  +L +L  N GK  ++  +   ++
Sbjct: 131 KEEKPKKIVAKDLEIDIDKYEVRVKGKKVSLTPLEFDLLRFLAENEGKVFSRDVLLDKLW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
           G +D   +   V+ HI +LR K+ +
Sbjct: 191 G-YDYFGDTRTVDVHIRRLRTKIED 214


>gi|62181691|ref|YP_218108.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62129324|gb|AAX67027.1| putative transcriptional regulator (OmpR family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322716176|gb|EFZ07747.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 270

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 54  ILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 113

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R      Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 114 LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 172 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+    KLG + + +   +GY++
Sbjct: 232 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 267


>gi|332968994|gb|EGK08036.1| phosphate regulon transcriptional regulatory protein PhoB
           [Psychrobacter sp. 1501(2011)]
          Length = 232

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 13/155 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR  V +      P
Sbjct: 77  SEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRRSSVLSGEK---P 133

Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           I       DP  Q     G    +   E R+L + M++  +   +TQ+   ++G  +  V
Sbjct: 134 IEAEGLSLDPVSQRLSADGTPVEIGPTEYRLLAFFMSHPERAYTRTQLLDQVWG-GNVYV 192

Query: 186 EENVVESHISKLRKKLR--NKLGFDPVDSKRFLGY 218
           E+  ++ HI +LRK L   N  GF  + + R  GY
Sbjct: 193 EDRTIDVHIRRLRKVLEPYNYAGF--IQTVRGTGY 225


>gi|325568319|ref|ZP_08144686.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|325158088|gb|EGC70241.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 243

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 13/162 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS   +    +   + G DD V KP     ++A++ A+ RR   S N  
Sbjct: 86  IREASKVPIIFISSRNTNMDMIMAMNMGADDFVTKPFEIDVLIAKINALLRR---SYNYV 142

Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E+         + +  D     + GE   L + E R+L  LM N GK +++ ++  A++ 
Sbjct: 143 ESSSETLVHNGLTLNIDNSSMYINGESIDLSKNEYRLLYILMKNHGKILSREKLLRALWD 202

Query: 180 LFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  V++N +  +I++LR+K+        +++K   GY +
Sbjct: 203 --DERFVDDNTLTVNINRLRRKIEQAGMNGYIETKVGQGYIV 242


>gi|294497140|ref|YP_003560840.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294347077|gb|ADE67406.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 230

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IRA+  Q P+I ++   +L   +   D G +D + KP    E+ AR+  ++ R 
Sbjct: 63  LEVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARI-RVWLRH 121

Query: 120 KVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             S + AE        G + V    R+   + E   L  +E  +L Y++ N+ + ++  Q
Sbjct: 122 PASTSPAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + ++G FD   + N+V  +I  LRKK+        + + R +GY +
Sbjct: 182 LLTNVWG-FDYYGDTNIVYVYIRYLRKKIDAPFSTPYIQTVRGVGYML 228


>gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
 gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R +R  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR++
Sbjct: 62  FEVCRAVREFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRVR 121

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S N  ++G + + +D R   + GE   L  +E  +L  L+ + GK  ++  + 
Sbjct: 122 SREAEEDSGNVIKSGDVSMDTDRRSLRIAGEDINLTSKEFDMLLLLVNHPGKVYSRDSLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             I+G  D   +   V+ HI +LR+K+
Sbjct: 182 HTIWG-SDYPGDARTVDVHIRRLREKI 207


>gi|228924395|ref|ZP_04087631.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835257|gb|EEM80662.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 228

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 7/148 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +       
Sbjct: 64  VCRRIRKTSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYSS 123

Query: 119 -LKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + V+N +   +  I +    R   V  E   +   E  IL YLM N+G  + + Q+ + 
Sbjct: 124 VISVTNEDTLMSSGIHIHFPSRTVTVDKEAKSITHTEFEILTYLMQNQGNVITREQLITK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           I+G ++ A ++  + SHI  LR KL  K
Sbjct: 184 IWG-YEFAGDDRTINSHIRNLRHKLGKK 210


>gi|170733982|ref|YP_001765929.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|254247342|ref|ZP_04940663.1| Two-component response regulator yvrH [Burkholderia cenocepacia
           PC184]
 gi|124872118|gb|EAY63834.1| Two-component response regulator yvrH [Burkholderia cenocepacia
           PC184]
 gi|169817224|gb|ACA91807.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 224

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +R     +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 64  IDVLRTLRGRGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 122

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                R+E+    G + +        + G    L  RE  +LE L+A  G  ++K+Q+  
Sbjct: 123 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG + E +  N VE +I  LRK    KLG D + + R LGY +
Sbjct: 181 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 220


>gi|194429158|ref|ZP_03061687.1| transcriptional regulatory protein CreB [Escherichia coli B171]
 gi|194412773|gb|EDX29066.1| transcriptional regulatory protein CreB [Escherichia coli B171]
 gi|323163220|gb|EFZ49052.1| transcriptional regulatory protein creB [Escherichia coli E128010]
          Length = 229

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 107/225 (47%), Gaps = 14/225 (6%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSA 176
            ++ +    IR+ + +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  +
Sbjct: 125 FSSPSPV--IRIGYFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 183 VWEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|126444717|ref|YP_001061957.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126224208|gb|ABN87713.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
          Length = 220

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R    +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LAALRRRDGALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---Q 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             RA+T    G +R+           E   L  +E  +L  LM   G  +++ Q    +Y
Sbjct: 120 AGRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + E +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216


>gi|331082150|ref|ZP_08331277.1| hypothetical protein HMPREF0992_00201 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402944|gb|EGG82509.1| hypothetical protein HMPREF0992_00201 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 221

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 16/169 (9%)

Query: 40  SSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           S    D+  ++  L G +GE+VL  P+I     ++P+I +S    +         G  D 
Sbjct: 42  SKETPDLILLDLMLPGLQGEEVL--PKI----KEIPVIVMSAKADVNHKASLLLEGAADY 95

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRE 153
           V KP H +E+LAR+     +L+   NR ET       +++ +D     V  +   L R E
Sbjct: 96  VTKPFHVKELLARIVV---QLRDRQNRKETSYLFFDDLKLCTDTHIVTVNEKEVKLTRTE 152

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             IL+ LM N  + + K+ +   I     + +E + ++ HIS LRKKLR
Sbjct: 153 FAILKLLMKNPAQIITKSALLEQISEDTPDCMESS-LKVHISNLRKKLR 200


>gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931]
          Length = 234

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 12/194 (6%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSG 94
           E ++ +  E    I   ++  G    E+ R +R A    P++ ++   + +  +    +G
Sbjct: 39  EAIEKAENEQPDLIVLDVMMPGMDGFEVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAG 98

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF------P 148
            DD V KP    E++AR+ AI RR +  N + E   I    D        EVF       
Sbjct: 99  GDDYVTKPFSLDEVIARIRAILRRSR--NAQEEDDAILRVDDLSLNIDTHEVFLGDEEID 156

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGF 207
           L   E  +L YLM N  + ++K QI   ++  +D   + ++VES+IS LR+K+  N+ G 
Sbjct: 157 LSPTEFNLLHYLMLNANRVLSKAQILDHVWE-YDFNGDSSIVESYISYLRRKIDNNREGH 215

Query: 208 DP-VDSKRFLGYSI 220
           +P + +KR +GY I
Sbjct: 216 EPLIHTKRGVGYMI 229


>gi|229093928|ref|ZP_04225019.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228689410|gb|EEL43224.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 229

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL Y M N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|325283532|ref|YP_004256073.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324315341|gb|ADY26456.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 5/155 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +S VP+I ++   ++   +     G DD + KP H  E+LARV    R+ +V+ + +
Sbjct: 69  LRKNSAVPIIVLTARDTVDEKVRLLGLGADDYIIKPFHPDELLARVKVQLRQ-RVTESLS 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAV 185
             G + +    R    +GE   L  +E  IL  L+   G+  ++ +I   I+ G   E  
Sbjct: 128 -MGDLTLDPQKRLATYKGEELRLSPKEFDILSLLIRQPGRVYSRQEIGQEIWQGRLPEG- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             NVV+ H++ LR KLR+  G+  + + R +GY++
Sbjct: 186 -SNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYAL 219


>gi|301052303|ref|YP_003790514.1| response regulator [Bacillus anthracis CI]
 gi|300374472|gb|ADK03376.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDEAKHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220


>gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 232

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 5/112 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           G DD + KP   RE+LARV A+ RR        N+  E+  ++V  +  + ++QG    L
Sbjct: 99  GADDYITKPFSVRELLARVKAVLRRTASFNVEENDIYESKTLKVDFERHEVKIQGNKVDL 158

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             +E  +L+ L+ N+GK + +  +   I+G ++   E   V+ HI  LRKK+
Sbjct: 159 TLKEFELLQILIKNKGKILKREMLLDKIWG-YEYIGETRTVDVHIRYLRKKI 209


>gi|167624826|ref|YP_001675120.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354848|gb|ABZ77461.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++ + S+   L+ F SG DD + KP  +RE++AR+ A+  R      R E   + 
Sbjct: 74  TPILFLTAFSSIDNKLEGFASGGDDYLAKPFDNRELIARITALSGRKSSHVKRLEIAGLI 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  + +    QG+   L      +LE LM    + V++  + + ++G  DE    NV+++
Sbjct: 134 MNCEQQQVSYQGQKLELTPACYTLLEVLMRASPEIVSRQSLENKLWG--DEPPSSNVLKA 191

Query: 193 HISKLRKKL 201
           HI  LR+ L
Sbjct: 192 HIYYLRRAL 200


>gi|59713744|ref|YP_206519.1| two component response regulator [Vibrio fischeri ES114]
 gi|197337772|ref|YP_002158123.1| transcriptional regulator [Vibrio fischeri MJ11]
 gi|59481992|gb|AAW87631.1| two component response regulator [Vibrio fischeri ES114]
 gi|197315024|gb|ACH64473.1| transcriptional regulator [Vibrio fischeri MJ11]
          Length = 218

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 79/150 (52%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGP 130
           VP+I ++   S++  +   DSG +D + KP    E+LAR+ A  R  +    +++   G 
Sbjct: 72  VPVILLTALVSVRDKVTGLDSGANDYLTKPFAEAELLARLRAHLRSPETDEVKSKLVVGN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + +  RD    GE   L R E  +L +L +N GK   + ++   ++G ++       V
Sbjct: 132 LAIDTSTRDVVNSGENVTLTRTEFDLLLFLASNLGKVFTRDELLDQVWG-YNHFPTTRTV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++HI +LR+K+   +G + +++ R +GY +
Sbjct: 191 DTHILQLRQKI---VGIE-IETLRGVGYKM 216


>gi|24379372|ref|NP_721327.1| putative response regulator [Streptococcus mutans UA159]
 gi|290580626|ref|YP_003485018.1| putative response regulator [Streptococcus mutans NN2025]
 gi|24377300|gb|AAN58633.1|AE014933_7 putative response regulator [Streptococcus mutans UA159]
 gi|254997525|dbj|BAH88126.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE  R IRA       I ++    ++  +   ++G DD + KPI  +E+LAR+A++ RRL
Sbjct: 62  LEALREIRASGDHTHAIMLTAMSEIEDKVTGLEAGADDYLTKPISLKELLARLASLERRL 121

Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++  T G +++    +   V G    L  +E +++ + M N  K ++  +IF  ++
Sbjct: 122 DRFTDKVLTFGSVKL-DLAQQEMVSGNSIRLAGKESKLMAFFMLNPNKSLSTKEIFQHVW 180

Query: 179 GLFDE-AVEENVVESHISKLRKKLRN 203
              D+  ++E  V  +IS LR+KL++
Sbjct: 181 AKDDDPEIDEGYVFIYISYLRQKLKS 206


>gi|322388248|ref|ZP_08061852.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321140920|gb|EFX36421.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP   + +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D  V G+   L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYAGVILNTKSMDVHVNGKAISLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +  +GF  +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEEGLIGF--IETKKGIGYGL 222


>gi|309390235|gb|ADO78115.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 227

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 4/147 (2%)

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E  LE  + +R    + +I +S     Q  +   + G DD + KP   +E++AR+ A+ R
Sbjct: 60  ENGLEFCQRVRKDFDLAIIFLSAKTEAQAKITGLELGADDYIGKPFSPQEVIARIKAVLR 119

Query: 118 RL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R      ++N  + G +++       + +GE   L  +E  +L +L  N  K   +  + 
Sbjct: 120 RYDSGAAADNCLQFGALKINKQEHYLKYKGENIDLTPKEFSLLWHLAQNPKKVFRRKNLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
            A++G +D   +   V++HI  LR+KL
Sbjct: 180 KAVWG-YDYFGDVRTVDTHIKSLRQKL 205


>gi|295427202|ref|ZP_06819838.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128990|gb|EFG58620.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 227

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 9/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+     
Sbjct: 67  RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  T    V    +D   +G +   L + E  ILE L+  + + V++  I +A++  
Sbjct: 127 EEKRTLTWQDAVIDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 185

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
            DEA V +N +  ++++LRKKL +++G D  +++K   GY
Sbjct: 186 -DEAFVSDNTLTVNVNRLRKKL-SEIGMDSAIETKVGKGY 223


>gi|290352221|dbj|BAI78821.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|262279620|ref|ZP_06057405.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259971|gb|EEY78704.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus
           RUH2202]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 78/158 (49%), Gaps = 4/158 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
           +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + +  
Sbjct: 69  QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 128

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           N      +++          G +  L + E  +L YL+ N+ + V + QI S ++ + FD
Sbjct: 129 NELSISDLKMDLVAHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNINFD 188

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N ++  + +LR K+        + + R LGY I
Sbjct: 189 --TDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 224


>gi|239629091|ref|ZP_04672122.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519237|gb|EEQ59103.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 240

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 14/210 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DD+ +V+   I L G+    ++ ++  E  E+L+ + + D+  ++  + G     
Sbjct: 13  ILVCDDDKQIVEAIDIYLTGEGFQVIKAYDGYEALEYLEGN-QVDLLIVDVMMPGLDGIR 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
             L   +R +S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 72  TTLK--VRENSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 129

Query: 119 -LKVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            L   N +AE      G +++  D ++  V G+   L   E  IL  L+ N GK  +  +
Sbjct: 130 QLGNMNQQAEGQVFKCGGLQINDDNKEVTVDGDPIKLTPIEYNILLLLVKNAGKVFSIDE 189

Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKL 201
           I+  I+   +EA+  +N V  HI  +R+K+
Sbjct: 190 IYEQIWN--EEAIGADNTVAVHIRHIREKI 217


>gi|223044188|ref|ZP_03614226.1| two-component response regulator [Staphylococcus capitis SK14]
 gi|314934703|ref|ZP_07842062.1| DNA-binding response regulator [Staphylococcus caprae C87]
 gi|222442449|gb|EEE48556.1| two-component response regulator [Staphylococcus capitis SK14]
 gi|313652633|gb|EFS16396.1| DNA-binding response regulator [Staphylococcus caprae C87]
          Length = 221

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           +R  S VP++ IS        +     G DD + KP +    +A++ A+ RR   L VSN
Sbjct: 66  MRKESNVPIMFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYDLSVSN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  +    ++  D        +   L   E +IL+ L  N GK V++T +    +   + 
Sbjct: 126 DELDVKGCKLILDEAKLVKDDDAVQLSLTELQILKMLFQNEGKYVSRTALIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL +    D +++K+ +GY +
Sbjct: 185 FIDDNTLAVNMTRLRKKLLSIGVDDFIETKKNVGYRV 221


>gi|183599669|ref|ZP_02961162.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827]
 gi|188021923|gb|EDU59963.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827]
          Length = 222

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 5/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++ +   ++P++ ++    +   +   ++G DD + KP    E+ AR+ A+ RR +  
Sbjct: 63  LAQMRKRGQEIPVLLLTANSDVSDRVKGLNAGADDYLTKPFDLAELEARIRALLRRSQGQ 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N  +      + +     V  E   L  RE  +L  L   RG+ V+KTQ+F  ++ L D
Sbjct: 123 VNEPQRFGSLCYHEEGYFLVDKEPLALTPREFAVLNTLFHRRGRPVSKTQLFEQVFSLSD 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           EA  ++ +E ++ ++RKKL    G D  +++ R LGY ++
Sbjct: 183 EANLQS-IELYVHRVRKKLT---GTDVNINTLRGLGYRLE 218


>gi|74316154|ref|YP_313894.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055649|gb|AAZ96089.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 220

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 31/230 (13%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60
            +L++D AL+ DG  A     G+S  GF      +WL    R+  +A+ A    +   V 
Sbjct: 3   ILLVEDDALLGDGLKA-----GLSQSGFAV----DWL----RDGEAAVTALTTERFAAVV 49

Query: 61  --LELPR--------IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
             L LPR         +R      P++ ++    L+  +   D G DD V KP    E+ 
Sbjct: 50  LDLGLPRRDGLSVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVA 109

Query: 110 ARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           AR+ A+ RR    S    + G I +    R    +G+   L  RE  +L  L+ + G  +
Sbjct: 110 ARLRALMRRAHGKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVL 169

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +  +   +Y  +DE V  N +E H+  LR+KL N    D + + R +GY
Sbjct: 170 TRRMLEEQLY-TWDEGVGSNALEVHVHHLRRKLGN----DVIRTVRGVGY 214


>gi|55821339|ref|YP_139781.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55823251|ref|YP_141692.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55737324|gb|AAV60966.1| response regulator (homolog to RR01Spn & Sth) [Streptococcus
           thermophilus LMG 18311]
 gi|55739236|gb|AAV62877.1| response regulator (homolog to RR01Spn & Sth) [Streptococcus
           thermophilus CNRZ1066]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP     +LA++  + RR        
Sbjct: 67  IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + +     D   QGEV  L + E +IL+ L  + G  V++  +   ++   D 
Sbjct: 127 NLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFDHAGNIVSREDLMKELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      D +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGL 222


>gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus LMG 18311]
 gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus CNRZ1066]
          Length = 229

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ A +RR  +
Sbjct: 63  EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +        + D +  +VQ        EV PL +RE  +L  L++N  + + + ++ 
Sbjct: 123 EATKKAPAKASTYRDLK-LDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 182 LQVWK-YDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 235

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 20/231 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIG- 55
            +++DD A ++   + LF    +   GF   E E+  ++     + R D+  ++  L G 
Sbjct: 3   ILVVDDEAPMR-ALLRLF----LEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGI 57

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G  V    RI+R  S VPLI ++    ++  +   ++G DD + KP    E+LAR+ A+
Sbjct: 58  DGWAVC---RILRRESDVPLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAV 114

Query: 116 YRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            RR      R       GP+ +    R+    G    L  +E  +L  L  + G+ + + 
Sbjct: 115 LRRTPRVEGRPADRVIAGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRA 174

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +I   ++G +D   +   V++H+  LR KL         +++ R +GY ++
Sbjct: 175 RIIERVWG-WDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLN 224


>gi|303242341|ref|ZP_07328826.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590104|gb|EFL59867.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 222

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP+I IS        +   + G DD ++KP     + A+V A+ RR        
Sbjct: 67  IRKLSKVPIIFISSASDNMNIVMAVNMGGDDFISKPFDLSVLTAKVQAMLRRTYDFAGQT 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + + +         +   L + E +IL+ L+ N+ K V++  I + ++   D 
Sbjct: 127 NLLEHKGVILNTSDTTLSYNDKKIDLTKNEYKILQVLIENKDKVVSRDTIMTKLWET-DS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL +    D + +K+ +GY +
Sbjct: 186 FIDDNTLTVNVTRLRKKLEDAGLCDFISTKKGIGYMV 222


>gi|299532441|ref|ZP_07045833.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298719679|gb|EFI60644.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 238

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 15/223 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D       D+G  LE  +    ++ L    R    A+   L+  G   L
Sbjct: 7   ILLVEDDAHIADLLSLHLRDEG--LEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA ++  P+I IS   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 65  EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 121 --VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               + R E+G + V     DP      + G    L  RE  +L +     GK  ++  +
Sbjct: 125 ALAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            +A++G   E   E+ V +HI++LR K+      +P    R L
Sbjct: 185 LNAVWGYQHEGY-EHTVNTHINRLRAKVE----LNPAQPTRIL 222


>gi|295093812|emb|CBK82903.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 229

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 7/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------K 120
           IR  S VP+I ++        +   + G DD V KP +  E+LARV +  RR       +
Sbjct: 67  IRESSNVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRRYMQLGGGE 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              ++   G I +    +   + GE+ PL   E  IL+ LM N GK  +  +I+ A++  
Sbjct: 127 TPKDKLVIGGIELDDKSKQVTLDGELMPLTPTEYDILKLLMQNVGKVFSTKEIYKAVWK- 185

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D    E  V  HI  LR+K+
Sbjct: 186 EDPMGAEGSVAVHIRHLREKI 206


>gi|290352217|dbj|BAI78819.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|290352167|dbj|BAI78794.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|290352159|dbj|BAI78790.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|257066585|ref|YP_003152841.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798465|gb|ACV29120.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 8/157 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP+I IS +      +   + G DD + KPI      A++ A+ RR    K+ +
Sbjct: 66  IRKKSKVPIIFISSHTESMDIIQAMNFGADDYITKPIDIAVTRAKIQAVLRRAYDYKIDS 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + +           E   L R E  ILE L  ++G  V +  I    +   DE
Sbjct: 126 NILEFDNVYLDLSKASISFGEETTILTRTELMILESLFESKGDIVMREDIIEKCWQ--DE 183

Query: 184 A-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
             +++N +  +I++LRKKLR ++G D  + +K+ +GY
Sbjct: 184 NFIDDNTLAVNITRLRKKLR-QIGKDNFIKTKKGMGY 219


>gi|253580747|ref|ZP_04858011.1| two-component system response regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848118|gb|EES76084.1| two-component system response regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 224

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 1/143 (0%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + +R++S +P+I ++   +    +   + GV+D ++KP     + AR+  I +  K
Sbjct: 63  FELCKEVRSYSNIPIIMLTARDTEMDEIKALELGVNDYLSKPFSLGVLKARMKRILQE-K 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + +  TG + +         +G    L + E R+L YL+ N+   ++K QI   I+  
Sbjct: 122 SESTKIVTGSLSIDQSTCKVYKRGSEISLSKLEYRLLVYLIENKNHILSKEQILEKIWDS 181

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
             + V+ N V  +IS+LR K+ +
Sbjct: 182 DGKYVDNNTVSVNISRLRTKIED 204


>gi|302879699|ref|YP_003848263.1| two component transcriptional regulator PhoB, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302582488|gb|ADL56499.1| two component transcriptional regulator PhoB, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 229

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 5/154 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           VP+I ++     +  +   +SG DD + KP   RE++AR+ A+ RR    +S ++  +G 
Sbjct: 77  VPIIMLTARGDERDKVLGLESGADDYITKPFSPRELMARIRAVMRRHIPTLSEDKVASGG 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +         +G    L   E R+L + M +  +  ++TQ+   ++G     VEE  V
Sbjct: 137 LELSPTSHRVTAKGLTIELGPTEFRLLHFFMTHAERVYSRTQLLDQVWGT-QVFVEERTV 195

Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
           + HI +LR  L    G D  + + R  GY    N
Sbjct: 196 DVHIRRLRASLEAS-GLDGLIQTVRGSGYRFSTN 228


>gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
 gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
          Length = 237

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCKKLRYKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  S+N A+      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSSNTAQQKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFQNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218


>gi|225573642|ref|ZP_03782397.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039010|gb|EEG49256.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
          Length = 233

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 21/171 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IRA S +P+I IS        ++  D+G DD + KP    E+LAR+    RRL 
Sbjct: 63  VEIIRKIRAWSNMPIIVISARSEDSDKIEALDAGADDYLTKPFSVEELLARLRVTQRRLA 122

Query: 121 VSNNRAETGPIRVFSDG--RDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQ 172
           +  NR++     VF++G  +   V G V+       L   E ++L  L  N GK +  T 
Sbjct: 123 MMQNRSQVEE-SVFTNGSLKIDYVAGCVYLNENELHLTPIEYKLLCLLSQNIGKVLTHTY 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFLGYSI 220
           I  AI+G        +  E+ I+ LR     LR K+   P DS +++   I
Sbjct: 182 ITQAIWG--------SSWENDIASLRVFMATLRKKIESAP-DSPQYIQTHI 223


>gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 7/134 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIRVFSDGRDPEVQGEVF 147
            + G DD V KP   RE++ARV  + RR      R E    G + V  D R         
Sbjct: 93  LEMGADDYVTKPFSPRELVARVRTVLRRSGTGAPREEVLRVGEVEVQVDRRRVRAGTTEV 152

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E  +L +LM   G+  ++ Q+ SA++G +  +     V+ H+++LR KL +    
Sbjct: 153 ALTATEFALLAHLMRAPGRVYSRDQLLSAVWG-YTASSGARTVDVHVAQLRAKLGDA--- 208

Query: 208 DPVDSKRFLGYSID 221
            P+ + R +GY+ D
Sbjct: 209 SPIRTVRGVGYAAD 222


>gi|294498951|ref|YP_003562651.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348888|gb|ADE69217.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 6/142 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I +S        +    +G DD + KP +  E++ARV +  RR K  N RA
Sbjct: 68  IREEKNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKKYNQRA 127

Query: 127 E-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           E      G + +    R   V+G+   L  +E  ILE L  ++G  ++  +I+ A++   
Sbjct: 128 EHEIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLARHKGTVMSMGKIYEAVWQ-A 186

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D    ++ V  HI+K+R+K+ +
Sbjct: 187 DALKSDSTVMVHITKIREKIED 208


>gi|264678857|ref|YP_003278764.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262209370|gb|ACY33468.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 238

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 15/223 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D       D+G  LE  +    ++ L    R    A+   L+  G   L
Sbjct: 7   ILLVEDDAHIADLLSLHLRDEG--LEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA ++  P+I IS   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 65  EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 121 --VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               + R E+G + V     DP      + G    L  RE  +L +     GK  ++  +
Sbjct: 125 ALAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            +A++G   E   E+ V +HI++LR K+      +P    R L
Sbjct: 185 LNAVWGYQHEGY-EHTVNTHINRLRAKVE----LNPAQPTRIL 222


>gi|300691429|ref|YP_003752424.1| response regulator, cheY family [Ralstonia solanacearum PSI07]
 gi|299078489|emb|CBJ51142.1| putative response regulator, CheY family [Ralstonia solanacearum
           PSI07]
          Length = 230

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPI 131
           +P++ ++ + +++  +   + G DD + KP    E+ AR  A+ RR       + + GP+
Sbjct: 73  LPVMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSHGHERTQLQCGPL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
                     ++GE   L  RER +LE L+   G+ V K  I   I+G+ +E+V  + +E
Sbjct: 133 HYDGTSGAFTLRGEPLALTGRERAVLEVLVLRDGRAVNKAAISEKIFGI-NESVNADAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LRKKL
Sbjct: 192 IYVHRLRKKL 201


>gi|266619280|ref|ZP_06112215.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM
           13479]
 gi|288869197|gb|EFD01496.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM
           13479]
          Length = 227

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 6/134 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149
            DSG  D + KP H  E+ AR+  + RR  +    A T G + + S+ +    QG     
Sbjct: 91  LDSGASDYLTKPFHFEELEARIRMLLRRSFIQTEAALTRGGLCLDSNLKTASFQGRPLEF 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGF 207
             RE  ILEYLM + G+ V+  ++   ++   D   +   N V+ +IS +R+KL+     
Sbjct: 151 SMREFSILEYLMIHMGRPVSAEELLEHVW---DSEADPFSNQVKVYISVIRRKLQAVTDE 207

Query: 208 DPVDSKRFLGYSID 221
           + + S R  GY ID
Sbjct: 208 EIIRSIRGAGYLID 221


>gi|255523201|ref|ZP_05390172.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186167|ref|ZP_06854572.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255513069|gb|EET89338.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049435|gb|EFG88864.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 231

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 10/149 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           EL + IR   Q+P+I IS     +  ++  + G DD + KP    E+ ARV +  RR +K
Sbjct: 65  ELIKNIRKTKQMPVIVISAKIDKKDKIELLNLGADDYITKPFDIEEVCARVYSNLRRYMK 124

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            SNN         + D       ++  V G+      RE  ILE L+ +  K  +K  +F
Sbjct: 125 FSNNNVSVNENLTYKDIVLNKETKEVCVNGKNITFTAREFEILELLLTHPKKVFSKANLF 184

Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLR 202
            +++G  +E + ++N V  H+S LR KL+
Sbjct: 185 ESVWG--EEYLGDDNTVNVHMSNLRSKLQ 211


>gi|255526636|ref|ZP_05393542.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186096|ref|ZP_06854501.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509669|gb|EET86003.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049364|gb|EFG88793.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 3/152 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           ++ + +P++ ++        +  F SG DD + KP    E+L R+ A+ RR K  S +  
Sbjct: 69  KSGNMIPILMLTAKQLTTDKIRGFQSGTDDYMTKPADEEELLWRIKALLRRAKEASEHIL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + G + + SD        E   LP++E ++L  L++       + Q+   I+G+  E+V 
Sbjct: 129 KIGEVILDSDAFTVTRIDEKQTLPKKEFQLLYRLLSTPDYIFTRLQLMDEIWGMDSESV- 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  V  HI++LRK+  +   FD V + R +GY
Sbjct: 188 DTTVNVHITRLRKRFSSYPEFDIV-AIRGVGY 218


>gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 236

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 16/169 (9%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ R IR+ S + P++ ++   +L+  +     G DD V KP    E++AR+ A+ RR 
Sbjct: 71  FEVARRIRSGSDRTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRR- 129

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQI 173
             S   A   P   ++D    E   EV+       L   E ++L Y M N G+ ++K QI
Sbjct: 130 --SKGDAPPPPRLQYADLELDEETHEVWRGGNSVQLSPTEFKLLRYFMVNAGRVLSKAQI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
              ++  +D   ++ +VES++S LR+K+ N    +P  + + R +GY +
Sbjct: 188 LDHVW-RYDFRGDDGIVESYVSYLRRKIDNT---EPRLIQTLRGIGYVL 232


>gi|167755010|ref|ZP_02427137.1| hypothetical protein CLORAM_00514 [Clostridium ramosum DSM 1402]
 gi|237735265|ref|ZP_04565746.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|167705060|gb|EDS19639.1| hypothetical protein CLORAM_00514 [Clostridium ramosum DSM 1402]
 gi|229381010|gb|EEO31101.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 3/153 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRA 126
           R  +++P++ +S           F  G DD + KP    E+L RV A+ RR K+ N +R 
Sbjct: 69  RVQNELPILMVSAKQLPADRNKGFIVGTDDFMTKPFDEEELLLRVKALLRRAKIVNEHRI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +  D    + +     LP++E  +L  L++  GK   + Q+   I+G+ D    
Sbjct: 129 IIGEVILDYDSLTVKRKNTCQELPQKEFMLLYKLLSYPGKIFTRIQLMDEIWGV-DSDTG 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              V  H+++LRK+  +   F+ + S R LGY 
Sbjct: 188 WETVTVHVARLRKRFEDWPEFEII-SVRGLGYK 219


>gi|166999354|ref|ZP_02265195.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|243064651|gb|EES46837.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 220

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R    +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---Q 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             RA+T    G +R+           E   L  +E  +L  LM   G  +++ Q    +Y
Sbjct: 120 AGRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + E +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216


>gi|29346892|ref|NP_810395.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298386461|ref|ZP_06996017.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|29338790|gb|AAO76589.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298260838|gb|EFI03706.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 229

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ 
Sbjct: 61  GFKMANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120

Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR   +    E  P R+           +   +  E   L ++E  IL  L+ N+G+  +
Sbjct: 121 RR--TATMETEKAPERLTYQSLVIDITKKKVSIDDEEVQLTKKEFEILLLLVQNKGRVFS 178

Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           +  I + I+   DE  V +  ++ +I++LRKK+
Sbjct: 179 REDILARIWS--DEVYVLDRTIDVNITRLRKKI 209


>gi|28897986|ref|NP_797591.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364229|ref|ZP_05776932.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260877141|ref|ZP_05889496.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260895801|ref|ZP_05904297.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902062|ref|ZP_05910457.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28806200|dbj|BAC59475.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088349|gb|EFO38044.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308093914|gb|EFO43609.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308109081|gb|EFO46621.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308111902|gb|EFO49442.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|328473058|gb|EGF43906.1| DNA-binding response regulator [Vibrio parahaemolyticus 10329]
          Length = 219

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 22/217 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L  +G++     DG+  +       EEW        +  ++   + KG        I  
Sbjct: 19  TLENNGWVPELSQDGI--DALYRATSEEWDAIVLDLGLPKLDGLTVLKG--------IRD 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +  
Sbjct: 69  ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARLRAQLRR--ASGNASPV 126

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             I   S D R  +V  QG+   L   E +++ Y M N  K +++T++   IY   FD  
Sbjct: 127 MQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + N +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 186 -DSNTIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|116750082|ref|YP_846769.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699146|gb|ABK18334.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 3/165 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + IR     P+I ++        +   + G DD V KP   RE+ ARV A+ RR  
Sbjct: 62  MELCKEIRKSHSTPVIFLTARTDEVDRVVGLEIGADDYVTKPFSPRELSARVRAVLRRTH 121

Query: 121 VSNNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V ++ A T  +   +D  R     G    L R E  IL+  +   G   ++ Q+   ++ 
Sbjct: 122 VRDHCAPTPHVFEVNDSKRRIAYHGRTLDLSRYEYEILKTFIRRPGHIYSRDQLMELVWE 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             + +++   V++HI  +R KLR      DP+ + R +GYS+  N
Sbjct: 182 QPETSLDRT-VDAHIKNIRAKLRVIAPESDPIVTHRGMGYSLREN 225


>gi|290352269|dbj|BAI78845.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|312115807|ref|YP_004013403.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220936|gb|ADP72304.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ +S   ++   +    SG DD + KP    E++ARV A+ RR              
Sbjct: 73  TPVLILSALGAVDDRVKGLRSGGDDYLPKPYSLVELVARVEALTRRGPTERAVTTYAVGD 132

Query: 133 VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
           +  D    +V   GE   L  RE R+LEYLM + G+ V +T +   ++   FD   + NV
Sbjct: 133 LVLDRLSHKVSRGGETIVLQPREYRLLEYLMKHAGQVVTRTMLLENVWDYHFDP--QTNV 190

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ HIS+LR K+    G   +++ R  GY I
Sbjct: 191 IDVHISRLRSKIDKGQGKPLLETVRGAGYMI 221


>gi|260550899|ref|ZP_05825105.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260406026|gb|EEW99512.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
          Length = 220

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GEKVL   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  
Sbjct: 59  GEKVLTTIRY--KQKNVPVIFITARDSIHDRVEGLDLGANDYLIKPFSLEELSARIRAQL 116

Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   +S       G + + +  +   + G    L  +E +IL  LM +    + + Q+  
Sbjct: 117 RNQTLSQQSILIWGDLHLDTQAKVVSLAGNPIDLTAKEFQILRKLMVHPEHIITRDQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A+Y   DE +E N +E  I +LRK    K+G   + + R LGY +
Sbjct: 177 ALYAWGDE-IESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216


>gi|302527275|ref|ZP_07279617.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302436170|gb|EFL07986.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 4/201 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D AL+ +       D G ++    S E    +  S   DV  ++  L   G   L
Sbjct: 5   VLLVEDDALISEALSLALADQGCAVTQAASGEDALAMLESVSVDVVLLDLML--PGMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R    +P+I I+     Q  +   ++G DD V KP+   E+ AR+ A+ RR   
Sbjct: 63  SVCHELRVRGDLPVIIITARADSQDVIAGLEAGADDYVTKPLVAGELAARIRALLRRAAP 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V     + G + + +        G    L R E R+L  L A  G+ V + Q+   I+G 
Sbjct: 123 VRRCCLQVGDLLLSTHDETVSRHGVQILLTRTEFRLLAELAAAEGEVVTREQLLHRIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D      +++ HI +LR+K+
Sbjct: 182 RDYFGGTRLLDVHIRRLRRKV 202


>gi|210621484|ref|ZP_03292655.1| hypothetical protein CLOHIR_00598 [Clostridium hiranonis DSM 13275]
 gi|210154741|gb|EEA85747.1| hypothetical protein CLOHIR_00598 [Clostridium hiranonis DSM 13275]
          Length = 234

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 26/212 (12%)

Query: 6   DDRALVKDGYIALFGDDGVS------LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           DD+ L K   I L  ++  S      +E  N LE +E++       +  ++ F      +
Sbjct: 9   DDKELCKLLQITLKSENIDSKICFSGIEAINELEKDEYIMLILDVMMPGLDGF------R 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE   I+R +S +P++ ++      + +     G DD + KP +  E LARV ++ RR 
Sbjct: 63  TLE---IVRENSDIPVLMLTAKDDTSSKVKGLRLGADDYITKPFNTEEFLARVDSLIRRY 119

Query: 120 KVSNNRAETGP----------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            ++N +++             + +  D    +    +  L  +E  +L +   N+G+ + 
Sbjct: 120 NMNNKQSKNTEDYRESLYFEGLEILPDEYSVKTDKGMIELLPKEFDVLYFCAINQGRILT 179

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           K QI+ A++     A ++N + S IS++RKK+
Sbjct: 180 KKQIYEAVWNE-SYAFDDNNIMSVISRIRKKI 210


>gi|261407257|ref|YP_003243498.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283720|gb|ACX65691.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 224

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 4/164 (2%)

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E  LE+   IR     P++ ++        +  F +G DD + KP   RE+ ARV A  R
Sbjct: 57  ESGLEICERIRGFVSCPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHLR 116

Query: 118 RLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R +    +A       + +    R+   Q +  PL ++E  I+E L  N G    K +I+
Sbjct: 117 REQRVPTKASVRFNHDLVINYTARELYFQDKRIPLAKKEFGIIELLSMNPGMVFEKERIY 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I+GL DE  + +V+  HI ++R K +     D +++   +GY
Sbjct: 177 EKIWGL-DEEGDSSVIAEHIRRIRNKFKEYGCSDRIETVWGVGY 219


>gi|170749884|ref|YP_001756144.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656406|gb|ACB25461.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 249

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R +R  +   P + +S    +   +    +G DD + KP    E+LAR  A+ RR 
Sbjct: 78  LSLIRSLREQNVATPTLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEALARRQ 137

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S    ET    G + +          G   PL  RE R+LEYLM + G+ V +T +  
Sbjct: 138 AGSGAAEETRYRIGDLELDRLSHRVTRAGREIPLQPREFRLLEYLMRHAGQVVTRTMLLE 197

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++   FD   + NV++ H+S+LR KL        + + R  GY + ++
Sbjct: 198 HVWDYHFDP--QTNVIDVHVSRLRSKLDKGFPSPIIHTVRGAGYVLRFD 244


>gi|29376397|ref|NP_815551.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|69243908|ref|ZP_00602486.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|126699488|ref|YP_001088385.1| two-component system response regulator [Clostridium difficile 630]
 gi|227519207|ref|ZP_03949256.1| response regulator [Enterococcus faecalis TX0104]
 gi|227553677|ref|ZP_03983726.1| response regulator [Enterococcus faecalis HH22]
 gi|229545549|ref|ZP_04434274.1| response regulator [Enterococcus faecalis TX1322]
 gi|255975586|ref|ZP_05426172.1| two-component system [Enterococcus faecalis T2]
 gi|256619346|ref|ZP_05476192.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256853387|ref|ZP_05558757.1| two-component system [Enterococcus faecalis T8]
 gi|256961640|ref|ZP_05565811.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|256964854|ref|ZP_05569025.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|257090159|ref|ZP_05584520.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257880523|ref|ZP_05660176.1| two-component system response regulator [Enterococcus faecium
           1,230,933]
 gi|257883531|ref|ZP_05663184.1| two-component system response regulator [Enterococcus faecium
           1,231,502]
 gi|257891929|ref|ZP_05671582.1| two-component system response regulator [Enterococcus faecium
           1,231,410]
 gi|257894764|ref|ZP_05674417.1| two-component system response regulator [Enterococcus faecium
           1,231,408]
 gi|258616835|ref|ZP_05714605.1| two-component system, response regulator [Enterococcus faecium DO]
 gi|260558207|ref|ZP_05830404.1| two-component system [Enterococcus faecium C68]
 gi|261206583|ref|ZP_05921282.1| two-component system [Enterococcus faecium TC 6]
 gi|293382632|ref|ZP_06628562.1| DNA-binding response regulator VncR [Enterococcus faecalis R712]
 gi|293386651|ref|ZP_06631226.1| DNA-binding response regulator VncR [Enterococcus faecalis S613]
 gi|294614552|ref|ZP_06694459.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|294617616|ref|ZP_06697245.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|294621925|ref|ZP_06701075.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|307272940|ref|ZP_07554187.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307275695|ref|ZP_07556835.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307277788|ref|ZP_07558873.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307291718|ref|ZP_07571590.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312904764|ref|ZP_07763912.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312908420|ref|ZP_07767383.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312978981|ref|ZP_07790703.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|314996395|ref|ZP_07861440.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|29343860|gb|AAO81621.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44934006|gb|AAS49400.1| response regulator [Enterococcus faecalis]
 gi|68196634|gb|EAN11059.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|115250925|emb|CAJ68751.1| Two-component response regulator; Tn1549-like,CTn5-Orf36
           [Clostridium difficile]
 gi|227073346|gb|EEI11309.1| response regulator [Enterococcus faecalis TX0104]
 gi|227177188|gb|EEI58160.1| response regulator [Enterococcus faecalis HH22]
 gi|229309334|gb|EEN75321.1| response regulator [Enterococcus faecalis TX1322]
 gi|255968458|gb|EET99080.1| two-component system [Enterococcus faecalis T2]
 gi|256598873|gb|EEU18049.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256711846|gb|EEU26884.1| two-component system [Enterococcus faecalis T8]
 gi|256952136|gb|EEU68768.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|256955350|gb|EEU71982.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|256998971|gb|EEU85491.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257814751|gb|EEV43509.1| two-component system response regulator [Enterococcus faecium
           1,230,933]
 gi|257819189|gb|EEV46517.1| two-component system response regulator [Enterococcus faecium
           1,231,502]
 gi|257828289|gb|EEV54915.1| two-component system response regulator [Enterococcus faecium
           1,231,410]
 gi|257831143|gb|EEV57750.1| two-component system response regulator [Enterococcus faecium
           1,231,408]
 gi|260075789|gb|EEW64094.1| two-component system [Enterococcus faecium C68]
 gi|260079200|gb|EEW66892.1| two-component system [Enterococcus faecium TC 6]
 gi|291079992|gb|EFE17356.1| DNA-binding response regulator VncR [Enterococcus faecalis R712]
 gi|291083903|gb|EFE20866.1| DNA-binding response regulator VncR [Enterococcus faecalis S613]
 gi|291592586|gb|EFF24188.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|291596125|gb|EFF27389.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|291598499|gb|EFF29566.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|306497170|gb|EFM66715.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306505528|gb|EFM74713.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306507571|gb|EFM76701.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306510554|gb|EFM79577.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|309386143|gb|ADO67011.1| DNA-binding response regulator [Enterococcus faecium]
 gi|310625640|gb|EFQ08923.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310631917|gb|EFQ15200.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311288220|gb|EFQ66776.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|313589447|gb|EFR68292.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|315029020|gb|EFT40952.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315033219|gb|EFT45151.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315144701|gb|EFT88717.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315161471|gb|EFU05488.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315574447|gb|EFU86638.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315577928|gb|EFU90119.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315580786|gb|EFU92977.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323481010|gb|ADX80449.1| response regulator [Enterococcus faecalis 62]
          Length = 217

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ ++ ++  
Sbjct: 59  LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNY 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++  
Sbjct: 119 GHLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKD 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 179 SEETPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215


>gi|332709036|ref|ZP_08429006.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332352225|gb|EGJ31795.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 231

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 101/204 (49%), Gaps = 19/204 (9%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTL 88
           N  E   +L +   +   AI  +L+  G   LEL R +R +++ +P++ ++    L+  +
Sbjct: 32  NGTEAWGYLNNHETQYTLAIFDWLL-PGLSGLELLRQLRYSNNPLPILMLTAKDRLEDRV 90

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI----------RVFSDG 137
              D+G DD + KP    E+LARV A++RR   +   + + G +          R+ ++G
Sbjct: 91  MGLDTGADDYLVKPFLMAELLARVRALHRRTPLLQPQQLQVGDLILDYGNRTVYRLAANG 150

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
               V     PL  +E ++LEY M +  + +   QI + ++ +  E +  NVV + +  L
Sbjct: 151 EKLHV-----PLTNKEFQLLEYFMKHPNQVMTTNQIRNQLWEVNAEPI-SNVVAAQMRLL 204

Query: 198 RKKLRNKLGFDPVDSKRFLGYSID 221
           R+KL +     P+++   LGY ++
Sbjct: 205 RRKLESINSSIPIETVHGLGYRLN 228


>gi|332296285|ref|YP_004438208.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179388|gb|AEE15077.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 16/157 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
             P+I ++   S++  +   DSG DD + KP    E+L+RV A+ RR       A + PI
Sbjct: 75  STPVIILTAKDSVKDKVLGLDSGSDDYLTKPFSFEELLSRVRALIRR-----RFATSSPI 129

Query: 132 RVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              SD      Q  +        L  +E  +LEYL  N+ K +++T I   I  L+DE  
Sbjct: 130 IKISDLVIDTAQKTIKRGNKRIDLSAKEYALLEYLALNKNKVISRTSI---IEHLYDEDF 186

Query: 186 E--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   NV++  I+++R K+        + + R +GYS+
Sbjct: 187 DLYSNVIDVFINRIRNKIDKDFDKKLIHTYRGIGYSL 223


>gi|283832502|ref|ZP_06352243.1| DNA-binding response regulator BaeS [Citrobacter youngae ATCC
           29220]
 gi|291072167|gb|EFE10276.1| DNA-binding response regulator BaeS [Citrobacter youngae ATCC
           29220]
          Length = 240

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSEVPIMMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K      +     P+ +  +GR     +G++  L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQQMDADSPL-IVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|268610621|ref|ZP_06144348.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 234

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 29/217 (13%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +    L G +G +  + +N LE  + L          I+  LI      
Sbjct: 8   ILVVDDDHDIVNAIAKLLGKEGYIIYKAYNGLEAIDMLMQHE------IQLILID----- 56

Query: 61  LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           + +P++        IR  + +P+I +S        +     G DD + KP +  E++ARV
Sbjct: 57  VMMPKLDGLSAMMKIREKNNIPIIVLSAKSEDSDKILGLSMGADDYITKPYNPMELVARV 116

Query: 113 AAIYRRL--------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
            +  RR          +S+N+   G + +  D R   + GE       E +I E LM N 
Sbjct: 117 NSNLRRYLSLGAAGSTMSDNKLRIGGLELDKDARQITLDGEPVKFTPTEYKITELLMENA 176

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           G+  +   I+S I+   D    EN V  HI  +R+K+
Sbjct: 177 GRTFSAEDIYSRIWN-EDSYSVENTVMVHIRHIREKI 212


>gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
 gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
          Length = 243

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 10/162 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I   + + P++ ++    ++  +   D G DD + KP    E+LARV  + R+   S
Sbjct: 79  LKKIREKNIKTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRK---S 135

Query: 123 NNRAETGPI----RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++ ++TG I     +  +  D  V        L  +E  ILEYL+ N+GK V+K +I   
Sbjct: 136 SDTSQTGNIFKVENLTVNCNDHTVFRDETSIKLSAKEFAILEYLIRNKGKVVSKEKIEEH 195

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++  FD     N+VE +I  LRKK+ +      + + R +GY
Sbjct: 196 VWD-FDYEGGSNIVEVYIKFLRKKIDDNFSPKLIHTIRRVGY 236


>gi|239617230|ref|YP_002940552.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506061|gb|ACR79548.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L + IR +S +P+I ++        +   + G DD + KP   +E++AR+ A  RR+  
Sbjct: 62  QLCKEIRTYSDLPIIFLTARDEEVNIVMGLELGADDYITKPFKLKELVARIRANLRRIEG 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  N    +G IR+    +   V+     L   E R+L  LM N G+ + + Q+   ++
Sbjct: 122 KKTVNRYLISGQIRLDIVNQKLMVEDAEQHLTPVEFRLLFALMDNAGRILTRDQLLGYVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
               + V++N +  HI KLR+K+ +    DP     + + R LGY
Sbjct: 182 NTESDFVDDNTLSVHIRKLREKIED----DPSKPEHILTVRGLGY 222


>gi|209558840|ref|YP_002285312.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
 gi|209540041|gb|ACI60617.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|218232702|ref|YP_002366911.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218160659|gb|ACK60651.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 227

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 17/205 (8%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQV-PLIGIS 79
           LEFE +    A+    A+E F  G    +L           E+ R IR  + V P+I ++
Sbjct: 22  LEFEGYESEIAKTGTEAMEKFGNGNWNLILLDVMLPNISGLEVLRRIRLKNAVIPIILLT 81

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFS 135
              S+   +   D G  D + KP    E+LAR+ A  R   V     N+  +   + +  
Sbjct: 82  ARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNVIKEEENSSYQIADLYLDE 141

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
             R+ +       L  RE  +L +LM +  + + + QI + ++G FD   + NVV+ +I 
Sbjct: 142 KTREVKRGNHFVELTPREFDLLLFLMKHENQVLNREQIVTNVWG-FDYYGDTNVVDVYIR 200

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220
            LR+K+   +    + + R +GY +
Sbjct: 201 YLRRKIDCNVDVPLIHTVRGVGYVL 225


>gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
 gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
          Length = 236

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAE-------TGPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR     +V+  + E        G +++  D  +  +
Sbjct: 95  GADDYMTKPFSPREVVARIKAILRRTEGKAEVTEEKTEDTEATILIGDLKILPDSYEVYL 154

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 155 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 212


>gi|323494003|ref|ZP_08099119.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
 gi|323311630|gb|EGA64778.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
          Length = 221

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 1/142 (0%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R+ S +P+I  +        L   + G DD V KP   RE++ARV  + RR +
Sbjct: 59  LDIYRELRSFSDIPIIMATAKVDEIDRLLGLELGADDYVCKPYSPRELVARVKNVLRRFQ 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +     P++V  D     V      L   E ++L Y   + G+  ++ Q+ + IY  
Sbjct: 119 HTPSHTTRSPLKVDPDKMQTLVDDTPVMLTPAEFQLLCYFNQHHGQVFSRDQLMNRIYS- 177

Query: 181 FDEAVEENVVESHISKLRKKLR 202
               V +  ++SHI  LRKK++
Sbjct: 178 DGRVVTDRTIDSHIKNLRKKVQ 199


>gi|319648303|ref|ZP_08002520.1| sensory transduction protein yxdJ [Bacillus sp. BT1B_CT2]
 gi|317389938|gb|EFV70748.1| sensory transduction protein yxdJ [Bacillus sp. BT1B_CT2]
          Length = 257

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 7/162 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR HS  P+I IS        +   ++G DD + KP  +  +LA++    RR      
Sbjct: 93  RQIRQHSTCPIIFISARSGEMDQVMAIENGGDDYIEKPFSYEVVLAKIKGQIRRAFGEYA 152

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +K      E   +++F +  +   + E   L ++E ++LE L+  RG++V          
Sbjct: 153 VKQGEKVIEFEGVQLFVERFELHCRNEKLELSKKESKLLEVLL-ERGEKVTSRDRLMEKT 211

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D  V+EN +  +I+++RKKLR+      ++S R  GY +
Sbjct: 212 WETDTFVDENTLNVYITRIRKKLRSMDVPFSIESVRGEGYQL 253


>gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL J1-023]
          Length = 240

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAE-------TGPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR     +V+  + E        G +++  D  +  +
Sbjct: 99  GADDYMTKPFSPREVVARIKAILRRTEGKAEVTEEKTEDTEATILIGDLKILPDSYEVYL 158

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 159 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 216


>gi|296113942|ref|YP_003627880.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis RH4]
 gi|295921636|gb|ADG61987.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis RH4]
          Length = 256

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 82/172 (47%), Gaps = 6/172 (3%)

Query: 52  FLIGKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
           +++  GE  ++  R ++   A + +P+I ++        +   D+GVDD + KP   RE+
Sbjct: 80  WMMPHGESGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTREL 139

Query: 109 LARVAAIYRRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           ++RV A+ RR  +   +   + G + + +  +     G    +   E R+L + + +  +
Sbjct: 140 ISRVKAVLRRTGIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSER 199

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              + QI  A++G  +  ++E  ++ HI +LRK L        + + R  GY
Sbjct: 200 AYTRAQILDAVWG-GNVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGY 250


>gi|258423308|ref|ZP_05686199.1| response regulator protein graR [Staphylococcus aureus A9635]
 gi|257846369|gb|EEV70392.1| response regulator protein graR [Staphylococcus aureus A9635]
          Length = 224

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 9/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+     
Sbjct: 64  RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  T    V    +D   +G +   L + E  ILE L+  + + V++  I +A++  
Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
            DEA V +N +  ++++LRKKL +++G D  V++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKL-SEIGMDSAVETKVGKGY 220


>gi|227874892|ref|ZP_03993045.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|227844667|gb|EEJ54823.1| response regulator [Mobiluncus mulieris ATCC 35243]
          Length = 229

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 14/229 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGK-G 57
           M   ++D   ++D  +   G  G   E F   + + +    A+   ++  ++  L G  G
Sbjct: 1   MIYFVEDDRNIRDLVVYTLGSTG--FEAFGCEDDKAFRAEMAKTPPELVLLDIMLPGTDG 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            ++L   +  R+ + +P+I ++   +    +   D G DD V KP    E+++RV A+ R
Sbjct: 59  IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118

Query: 118 RLKVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R   S   +        G I +        V GE   L  +E ++LE LM   G   ++ 
Sbjct: 119 RSSRSTQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+  +I+G +    E   V+ HI  LRKKL     +  V + R +GY +
Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGEAAKY--VKTVRGVGYKV 224


>gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 230

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R+     P++ ++    +   +   D+G DD + KP    E+LARV +++RR 
Sbjct: 60  LEVCRTLRSTGDDRPILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLFRR- 118

Query: 120 KVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++ ++A   P       + +  D RD    G+   L R E  +LEYLM N  K ++++ 
Sbjct: 119 SITESQAPEQPKELEFEDLVLNPDTRDVTRGGKPISLTRTEFALLEYLMRNPRKVLSRSD 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G ++     N +E +I  LRKK         + + R +GY +
Sbjct: 179 ILEEVWG-YNFPTSGNALEVYIGYLRKKTEANGESRLIHTVRGVGYVL 225


>gi|53717560|ref|YP_105537.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|53721677|ref|YP_110662.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|67639687|ref|ZP_00438526.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|76819632|ref|YP_337359.1| response regulator protein [Burkholderia pseudomallei 1710b]
 gi|124383153|ref|YP_001023876.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126447427|ref|YP_001078753.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126458475|ref|YP_001074902.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134278880|ref|ZP_01765593.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167722822|ref|ZP_02406058.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167741803|ref|ZP_02414577.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167818985|ref|ZP_02450665.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167827365|ref|ZP_02458836.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167848846|ref|ZP_02474354.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167897444|ref|ZP_02484846.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167905799|ref|ZP_02493004.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167914106|ref|ZP_02501197.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167922015|ref|ZP_02509106.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217418866|ref|ZP_03450373.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|226194866|ref|ZP_03790457.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237510584|ref|ZP_04523299.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242313496|ref|ZP_04812513.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254179219|ref|ZP_04885871.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254183005|ref|ZP_04889597.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254189661|ref|ZP_04896170.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254192765|ref|ZP_04899200.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254204353|ref|ZP_04910710.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254209237|ref|ZP_04915584.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254264557|ref|ZP_04955422.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254299935|ref|ZP_04967381.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|254356523|ref|ZP_04972798.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52212091|emb|CAH38100.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52423530|gb|AAU47100.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76584105|gb|ABA53579.1| response regulator protein [Burkholderia pseudomallei 1710b]
 gi|124291173|gb|ABN00443.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126232243|gb|ABN95656.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126240281|gb|ABO03393.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134249299|gb|EBA49380.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|147744776|gb|EDK51859.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147750460|gb|EDK57530.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148025550|gb|EDK83673.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157810251|gb|EDO87421.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157937338|gb|EDO93008.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160694546|gb|EDP84556.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|169649519|gb|EDS82212.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184213538|gb|EDU10581.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217398170|gb|EEC38185.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|225932671|gb|EEH28667.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|235002789|gb|EEP52213.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|238520280|gb|EEP83741.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242136735|gb|EES23138.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254215559|gb|EET04944.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 220

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R    +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---Q 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             RA+T    G +R+           E   L  +E  +L  LM   G  +++ Q    +Y
Sbjct: 120 AGRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + E +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216


>gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL S4-378]
          Length = 240

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAE-------TGPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR     +V+  + E        G +++  D  +  +
Sbjct: 99  GADDYMTKPFSPREVVARIKAILRRTEGKAEVTEEKTEDTEATILIGDLKILPDSYEVYL 158

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 159 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 216


>gi|261211760|ref|ZP_05926047.1| two-component system response regulator QseB [Vibrio sp. RC341]
 gi|262404056|ref|ZP_06080611.1| two-component system response regulator QseB [Vibrio sp. RC586]
 gi|260839110|gb|EEX65742.1| two-component system response regulator QseB [Vibrio sp. RC341]
 gi|262349088|gb|EEY98226.1| two-component system response regulator QseB [Vibrio sp. RC586]
          Length = 219

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 22/216 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL + G++     DG+  +       EEW       DV  ++  L  K + +  L  I  
Sbjct: 19  ALDQTGWVPELSQDGI--DALYRATAEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +  
Sbjct: 69  ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             +   S D R  +V  +G+   L   E +++ Y M N  K +++T++   IY   FD  
Sbjct: 127 MQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEHIYKQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + N +E  I +LRK    K+  D + + R LGY +
Sbjct: 186 -DSNTIEVFIGRLRK----KIAPDVIKTVRGLGYQL 216


>gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 4/145 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR   + P+I ++        +   + G DD + KP   +E+LARV A+ RR  
Sbjct: 65  IDVLKWIRKEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRRYN 124

Query: 121 VSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V N   E       +   +      +G+   +P +E  ++ YL  N+ +   + Q+   +
Sbjct: 125 VDNENKEVLSFEDLAIDINSYTVVYKGQEIKMPPKEFELVYYLANNKNRVFTREQLLCEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G +D   +   V+ H+ +LR+KL+
Sbjct: 185 WG-YDYPGDSRTVDVHVKRLREKLQ 208


>gi|251779963|ref|ZP_04822883.1| response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084278|gb|EES50168.1| response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 218

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            +P+I ++    L   +    SG +D + KP    E+LAR+  + RR   ++N  E   +
Sbjct: 72  NIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVLRRYSKNSNCIEFENL 131

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +++ + R  +   E   L  +E  ++  L+ N+   +++  +   I+G ++   E   ++
Sbjct: 132 KIYEEERLIKRDDETIDLTLKEFELMVLLVKNKNMALSREYLLEKIWG-YEYMGETRTID 190

Query: 192 SHISKLRKKL 201
           +HI KLRKKL
Sbjct: 191 NHIQKLRKKL 200


>gi|90020232|ref|YP_526059.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89949832|gb|ABD79847.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 231

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 12/149 (8%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGPI 131
           P+I  +   S +  ++  +SG DD + KP+   E+LARV    RRL +  ++     G I
Sbjct: 76  PVIFTTQRDSEEDIVEALNSGADDYLVKPLRKAELLARVNVARRRLGLASASTTLTLGDI 135

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V +  R    QGE   + +++  +  +L++N GK +++  +  A++G+  + +    V+
Sbjct: 136 LVDTQARTITKQGEQVKVTQKDFDVTVHLLSNVGKVLSREYLLKAVWGVSAD-LNTRTVD 194

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            H+S++R+     LG +P      +GY I
Sbjct: 195 MHVSRVRR----SLGINP-----DMGYCI 214


>gi|581296|emb|CAA54211.1| response regulator [Lactococcus lactis]
 gi|300069939|gb|ADJ59339.1| Nisin biosynthesis two-component system, response regulator NisR
           [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 12/170 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR     P+I +S   + +  ++    G DD + KP   ++++A+V A  +R + 
Sbjct: 62  EICKRIRREISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 121

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S  R + GPI  + + R   V G+  PL  RE  ILE L     K   +  I
Sbjct: 122 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  +Y  +  A+  ++ E +I ++R K       +P+ + R LGY   W+
Sbjct: 182 YDDVYDEYSNALFRSISE-YIYQIRSKF-APYDINPIKTVRGLGYQ--WH 227


>gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 230

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 15/166 (9%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R  S+VP++ ++        +   + G DD + KP + RE+ AR+ AI RR + 
Sbjct: 61  EILKRLRQRSKVPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRRYER 120

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + +R ET  I +    R+    G+   L   E  ILE LM + G+ +++  +    
Sbjct: 121 DTPATGHRIETNGIVLDPGTREVTAGGKKIELTTFEFDILEMLMRSAGRVLSRDALMENF 180

Query: 178 YGL----FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           Y      FD +     ++ HIS LRKKL N  G D + + R +GY 
Sbjct: 181 YNRKATPFDRS-----IDMHISHLRKKLEN--GDDLIKTIRGVGYQ 219


>gi|330831698|ref|YP_004394650.1| beta-lactamase response regulator [Aeromonas veronii B565]
 gi|328806834|gb|AEB52033.1| Beta-lactamase response regulator [Aeromonas veronii B565]
          Length = 224

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 19/226 (8%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-- 61
           L++D A + D  I     DG  +E F   +     Q   R + +  +  ++  G   +  
Sbjct: 8   LVEDEASIADTLIYALQTDGFEVEWFMLGQ-----QLLTRLEQTRPDFLILDVGLPDISG 62

Query: 62  -ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + +RA + +PL+ ++        L   + G DD V KP   RE+ ARV  I RR +
Sbjct: 63  FELCKQVRALTDIPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRRSQ 122

Query: 121 VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                 +   + V  + R     +G+   L R E  +L+ LM   G+  ++ Q+   ++ 
Sbjct: 123 PVA--PQPSALLVLDEERARIHFRGQPLALTRYEYLLLKTLMLAPGRVYSRQQLMDLVWQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
             +E+++   V++HI  +R KLR     DP    + + R LGYS++
Sbjct: 181 DAEESLDRT-VDTHIKTIRAKLREH---DPEANLILTHRGLGYSLE 222


>gi|313673162|ref|YP_004051273.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939918|gb|ADR19110.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 211

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 7/147 (4%)

Query: 56  KGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           KGE +L   R IR     +P+I I+    + +    F+ G DD + KP   +E+L R+ A
Sbjct: 55  KGEYIL---REIRKKGLDLPIIVITAKSDMDSKEICFEYGADDYIVKPFDPKELLLRIKA 111

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + +R+    N      +  FS G+   V      L R E  +L  L  NRGK V   +I 
Sbjct: 112 LTKRVYCCENLRIDNVLIDFS-GKKLYVDDMEVHLSRIEWELLCLLAQNRGKLVTMDKIL 170

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
           S I+G  D+ V    + ++I  LRK L
Sbjct: 171 SYIWG--DKVVGTESIRTYIKNLRKAL 195


>gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus
           thermophilus ND03]
          Length = 229

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ A +RR  +
Sbjct: 63  EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +        + D +  +VQ        EV PL +RE  +L  L++N  + + + ++ 
Sbjct: 123 EATKKAPAKASTYRDLK-LDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 182 LQVWK-YDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|299832743|gb|ADJ56358.1| NisR [Lactococcus lactis subsp. lactis]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 12/170 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR     P+I +S   + +  ++    G DD + KP   ++++A+V A  +R + 
Sbjct: 62  EICKRIRREISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 121

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S  R + GPI  + + R   V G+  PL  RE  ILE L     K   +  I
Sbjct: 122 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  +Y  +  A+  ++ E +I ++R K       +P+ + R LGY   W+
Sbjct: 182 YDDVYDEYSNALFRSISE-YIYQIRSKF-APYDINPIKTVRGLGYQ--WH 227


>gi|220929080|ref|YP_002505989.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999408|gb|ACL76009.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 230

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 5/144 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR +S VP+I I+        +   D G DD + KP    E++AR+ AI RR+ 
Sbjct: 62  FEVCREIRQNSNVPIIMITAKAEEADRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVD 121

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +S+       +   + +     + +V G    L ++E  IL  L  N GK  ++  +  +
Sbjct: 122 ISDEDDKKIIQHPGLEINISDYEVKVNGSPVNLTKKEIEILWLLSNNPGKVFSRDNLLDS 181

Query: 177 IYGLFDEAVEENVVESHISKLRKK 200
           ++G ++   +   V++HI +LR K
Sbjct: 182 VWG-YEYFGDARTVDTHIKRLRAK 204


>gi|218673989|ref|ZP_03523658.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli GR56]
          Length = 186

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 2/124 (1%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +  + P++ +S    ++  +     G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDE 183
             DE
Sbjct: 181 GMDE 184


>gi|58039296|ref|YP_191260.1| two component response regulator [Gluconobacter oxydans 621H]
 gi|58001710|gb|AAW60604.1| Two component response regulator [Gluconobacter oxydans 621H]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 10/188 (5%)

Query: 37  WLQSSAREDVSAIEAFLIG--KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           +L  S   DV  ++  L G   G ++LE  R     +  P++ +S    +   +    +G
Sbjct: 38  FLAVSENYDVVILDRMLPGGIDGLRILETLR--GQKNATPVLLLSALADVDERVAGLKAG 95

Query: 95  VDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151
            DD + KP    E+LARV A+ RR +       R   G + +    R  +  GE   L  
Sbjct: 96  GDDYMTKPFAFSELLARVEALGRRGRPESAPQTRLVVGDLEMDLLSRTVKRGGEKIDLQP 155

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           RE R+LE+L+ + G+ V +T +   ++   FD   + NV++ H+S+LR+K+        +
Sbjct: 156 REFRLLEFLIRHAGQVVTRTMLLERVWDYHFDP--QTNVIDVHVSRLRQKVDKPFDKPMI 213

Query: 211 DSKRFLGY 218
            + R  GY
Sbjct: 214 HTIRNAGY 221


>gi|10957407|ref|NP_051624.1| response regulator [Deinococcus radiodurans R1]
 gi|6460836|gb|AAF12540.1|AE001826_9 response regulator [Deinococcus radiodurans R1]
          Length = 219

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 9/163 (5%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           EL R +RA  ++VP++ ++    L   ++  D G D  + KP    E+LA + A + RR 
Sbjct: 61  ELARELRAGGAEVPIVFLTARSDLADRVEGLDLGGDAYLVKPFELPELLAVLRAVVRRRA 120

Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + + R E   G  R+ + GR    QGE+  L  RE  +LE L  +R +   + ++ + +
Sbjct: 121 AMCSARIEFAGGQGRLDTSGRQVWWQGELTGLTAREYALLEALTLSRERWFTREELLTKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  + + +  VV+ ++S LR+KL      + V S R LGY +
Sbjct: 181 WG-PEFSGDMRVVDVYVSYLRRKLAP----EAVQSSRGLGYRV 218


>gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
          Length = 234

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR +
Sbjct: 61  LEVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSE 120

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           ++  +             G + +  D    +  G+   L  RE  +L +L  + G+ + +
Sbjct: 121 LAETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY I  N
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDAPSRPEYILTRRGVGYFIKGN 233


>gi|331702134|ref|YP_004399093.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129477|gb|AEB74030.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 231

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 97/208 (46%), Gaps = 17/208 (8%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGE-------------KVLELPRIIRAHSQVPLIGI 78
           L+FE++    A++ + A++ +   +G                LE+ R IR +  +P+I +
Sbjct: 22  LKFEDYQVLLAKDGLEALQVYDNNRGNLDLIILDWMLPKLDGLEVLRRIRKNDDIPVIMM 81

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR---VFS 135
           +    +   +   DSG DD + KP    E+LAR+  + R     + ++E   +    + +
Sbjct: 82  TARDYVGDKVAGLDSGADDYITKPFEIEELLARIRVVLRHESHHHQQSELYTVEDLTLNT 141

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
             R      ++  L +RE  +L  L+ + G+ + + ++  A++G+  E  + NVV+ +I 
Sbjct: 142 KSRQVSRGNQLIQLTQREYELLLTLIRHGGETLTRDELLDAVWGVDFEG-QPNVVDVYIR 200

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            LR K+        + + R +GY +  N
Sbjct: 201 YLRNKVDRGYSKQLIHTVRGVGYVMSGN 228


>gi|290352251|dbj|BAI78836.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|239995459|ref|ZP_04715983.1| two component transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 250

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 11/123 (8%)

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRL----------KVSNNRAETGPIRVFSDGR 138
           ++++ GVDD ++ P   R  +AR+ +  RR           + S  R E GP+++     
Sbjct: 94  NYYEVGVDDYLSGPFDARMFIARIRSHMRRSMPSQEHLRPSQGSEERIEIGPLKIDQRFH 153

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              + G+V  L  RE  +L+Y   +  +  ++ Q+ S ++G   E   E+ V +HI++LR
Sbjct: 154 SVTLNGQVLTLTAREFALLDYFCRHPNQVFSRNQLLSEVWGYNHEGY-EHTVNTHINRLR 212

Query: 199 KKL 201
            KL
Sbjct: 213 TKL 215


>gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41]
 gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 240

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 23/170 (13%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR     P+I ++        ++ F  G DD + KP    E++ARV A  RR  + N  +
Sbjct: 78  IRETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRRFTLYNQSS 137

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + +  + R   +      L   E  IL YL +NRGK ++  ++F  I+G
Sbjct: 138 KPHEDTIDFAGLMINKNTRQVLLNERQLSLTPTEFSILWYLSSNRGKVISSEELFQEIWG 197

Query: 180 --LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221
              F+     N V  HI  LR+K+R     D V++ +F+      GY+I+
Sbjct: 198 EKYFN---SNNTVMVHIRHLREKMR-----DSVENPKFIKTVWGVGYTIE 239


>gi|730156|sp|Q07597|NISR_LACLA RecName: Full=Nisin biosynthesis regulatory protein nisR
 gi|308848|gb|AAA25201.1| nisR [Lactococcus lactis]
 gi|575305|emb|CAA80466.1| NisR [Lactococcus lactis]
 gi|326406184|gb|ADZ63255.1| nisin biosynthesis two-component system, response regulator NisR
           [Lactococcus lactis subsp. lactis CV56]
          Length = 229

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 12/170 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR     P+I +S   + +  ++    G DD + KP   ++++A+V A  +R + 
Sbjct: 63  EICKRIRREISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 122

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S  R + GPI  + + R   V G+  PL  RE  ILE L     K   +  I
Sbjct: 123 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  +Y  +  A+  ++ E +I ++R K       +P+ + R LGY   W+
Sbjct: 183 YDDVYDEYSNALFRSISE-YIYQIRSKF-APYDINPIKTVRGLGYQ--WH 228


>gi|319953318|ref|YP_004164585.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
 gi|319421978|gb|ADV49087.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
          Length = 224

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            + G G +VL++ +  +       I IS   SL   L+  D G DD + KP H  E+ +R
Sbjct: 54  LVTGSGLEVLKVLK--QQDRNTATIIISANSSLDDKLEGLDLGADDYLIKPFHLAELNSR 111

Query: 112 VAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + AI RR K       E   I V +  +   V+G    L R+E  ++ + + N+ + ++K
Sbjct: 112 IKAILRRGKFGGTETIEFNEISVDTRAKTVFVEGRALILTRKEYDLILFFITNKNRVLSK 171

Query: 171 TQIFSAIYGLFDEAVEE-NVVESHISKLRKKL 201
             I   ++G   + ++  + +  HI+ LRKKL
Sbjct: 172 EIIAEHLWGDHSDLIDNYDFIYVHINNLRKKL 203


>gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300076681|gb|ADJ66080.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK-PIHHREILARVAAIYRRLK 120
           E+ R +R  S VP++ ++     +  L   + G DD + K P   REI+ARV ++ RR  
Sbjct: 76  EICRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNA 135

Query: 121 VSNNRAETGPIRVFSDGRD----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   R    P R      D      V+GE   L   E R+L+   +  G+  ++ Q+ + 
Sbjct: 136 LVQQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQLLNH 195

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   D +V +  V++HI  LR+KL     G + + +   +GY  +
Sbjct: 196 LHD-DDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGYCFE 240


>gi|161950137|ref|YP_402695.2| transcriptional regulatory protein YedW [Shigella dysenteriae
           Sd197]
 gi|309786827|ref|ZP_07681444.1| transcriptional activator protein irlR [Shigella dysenteriae 1617]
 gi|308925313|gb|EFP70803.1| transcriptional activator protein irlR [Shigella dysenteriae 1617]
          Length = 216

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 3/160 (1%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           ++D + I   ++  G    ++ + +R   Q P+I ++   S+   +   DSG +D + KP
Sbjct: 42  KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               E+LARV A  R+    N+  E   +R+ S  +          L R+E ++L  L +
Sbjct: 102 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 161

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201
             G+ + +T I S I+G+ FD   + N V+  I +LR K+
Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKV 199


>gi|332533790|ref|ZP_08409646.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036721|gb|EGI73184.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 3/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +EL + IRA S +P+I ++        L   + G DD + KP   +E++AR+ A+ RR  
Sbjct: 63  IELCKKIRAFSSLPIIMLTAKSEEIDRLQGLEIGADDYICKPFSPKEVIARIKAVLRRTS 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N       ++  D  +  + G+       E +I    +++ G+   +  I + +Y 
Sbjct: 123 QPKTNIINHNNFQLHKDDYEARLNGKSIGFTAVEFKIFLLFISHVGRVFTREDIINNVYS 182

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
              +  + N +++HI  +RKK+ + + G +P+ +   +GY
Sbjct: 183 DTTDISDRN-IDTHIKNIRKKINDIQAGLNPIAAVYSVGY 221


>gi|325275439|ref|ZP_08141370.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324099415|gb|EGB97330.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +RA S   ++ ++ +  L   +   D G DD + KP    E+LAR+ ++ RR   ++ + 
Sbjct: 66  LRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRR---NDQQL 122

Query: 127 ETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           +   +RV     DP        G+   L  +E  +L  LM   G+ +++TQI S ++ + 
Sbjct: 123 QPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWDMN 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 183 FD--CDTNVVEVSIRRLRAKIDDPFDTKLIHTLRGVGYVLE 221


>gi|315660023|ref|ZP_07912881.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|315494924|gb|EFU83261.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 223

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 30/210 (14%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEW-----LQSSAREDVSAIEA-----FLIG------KG 57
           GY AL  +D + +    SL   +      L  S +E +  +E       L+        G
Sbjct: 2   GYHALIIEDDIDIAHILSLTLTKMHIKTTLNFSGQEAIETLEKDQFDLILLDLMLPEVSG 61

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E+VL     I+AH+   +I IS    ++  +    SG DD + KP   +E+ AR+    R
Sbjct: 62  EEVLSY---IKAHANSRVIVISAKTDVEEKVRLLSSGADDYLTKPFDTKELAARIDVQLR 118

Query: 118 RLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            L+        G I  + D       R  +V+ +V  +   E  IL   M    + ++K 
Sbjct: 119 NLQ---QMPRQGDILTWRDLTIDKQTRKVQVKNQVLNVTNTEYDILCLFMLTPEQPISKQ 175

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +I+  I G++    ++N V  HIS +RKKL
Sbjct: 176 KIYENIQGIY--LGDDNTVNVHISNIRKKL 203


>gi|317046592|ref|YP_004114240.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316948209|gb|ADU67684.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 219

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 18/204 (8%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPR------IIRAHSQ---VPLIG 77
            +LE   W     R+ V A  A+  G    VL    LPR      + RA ++    P++ 
Sbjct: 18  QALEAAGWSVDWVRDGVFATNAWTEGGYSCVLLDLGLPREDGIHVLRRARNRGDMTPVLV 77

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSD 136
           ++   ++   +   DSG DD + KP   +E+LAR+ AI RR    +++   +G +++   
Sbjct: 78  LTARDTVAQRVQGLDSGADDYLLKPFDLQEVLARMRAITRRRHGAADSLLGSGDVQLDMM 137

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R+   +G+   L  RE  +L  L+   G  +++ Q+ + IYG + E V  N V+  I  
Sbjct: 138 TREVLYKGQREQLTAREYALLYALLERPGAILSREQLENRIYG-WGEEVTSNAVDVLIHG 196

Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220
           +R+KL N++    + + R LG+ +
Sbjct: 197 MRRKLDNEV----IRNVRGLGWRV 216


>gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 5/149 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AETGP 130
           +P++ ++    ++  +    +G DD + KP    E+LAR+ A+ RR K    R     GP
Sbjct: 75  LPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALLRRSKRQPTRHLLRNGP 134

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
           + +  + R          L  RE  +L YLM +  + +++ QI+  ++G  FD     ++
Sbjct: 135 LTLDLNARTATCGERTLSLTPREFDLLAYLMQHPRRAISRLQIYREVWGHDFDHGT--SL 192

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +E +IS LR+KL+       + + R +GY
Sbjct: 193 LEVYISYLRRKLQEAGCPGYIATVRGVGY 221


>gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K  N   
Sbjct: 68  IREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTNT 127

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY- 178
                  E G + V +D R   ++G    L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 128 DNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIYEAVWK 187

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
             F ++  +N V  HI+K+R K+
Sbjct: 188 DAFYKS--DNTVMVHITKIRDKI 208


>gi|168705023|ref|ZP_02737300.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gemmata obscuriglobus
           UQM 2246]
          Length = 246

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 35/221 (15%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG----KG 57
            V+++D   ++ G       D + L G+   E  +          + ++  L+     K 
Sbjct: 6   IVVVEDEPAIRRGV-----SDALRLSGYEVTEAADGATGLREAGAAGVDLVLLDIMLPKR 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + +  L  + R +   P++ ++   S    +     G DD V KP   +E++ARV AI R
Sbjct: 61  DGLEVLSELRRTNPTRPVVLLTARGSEDDRVRGLKMGADDYVVKPFSAKELIARVEAILR 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR---------------ILEYLMA 162
           R            +R   + R  E+   +  L RRE R               +L+YL++
Sbjct: 121 R-----------TMRSVREVRVVELGSGIIDLLRREVRWADGTRLDLSETEAALLKYLVS 169

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           NR + V++ ++ S ++G+    +E   V+ H+++LR KLR+
Sbjct: 170 NRERAVSREELLSRVWGIGTAGLETRAVDMHVARLRAKLRD 210


>gi|167846150|ref|ZP_02471658.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
          Length = 231

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAE 127
           + +P++ +++       ++  ++G DD + KP   RE +ARV A+ RR  VS       E
Sbjct: 72  APLPILVLTNAVLETDLVEALEAGADDYLIKPPREREFVARVNALRRRASVSKQFEGTIE 131

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G  R+ +  R   + GE  PL  +E  I+E L  + G+ V +  I S ++G   E    
Sbjct: 132 IGGYRIATVERAVYLAGERIPLSPKEYEIVELLARHVGQVVPRKTIISRVWGRAAEEEVS 191

Query: 188 NVVESHISKLRKKL 201
             +++HI ++R+K+
Sbjct: 192 RSLDTHIYRIRRKM 205


>gi|134103035|ref|YP_001108696.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915658|emb|CAM05771.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 223

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 20/139 (14%)

Query: 77  GISDYPSLQTT--------LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRA 126
           GISD P++  T        +    +G DD V KP     + AR+ A+ RR + S      
Sbjct: 67  GISDVPTIVATARDDEREIVRLLRAGADDYVVKPFSSEHLNARIEAVLRRARGSRPPQAV 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI----YGLFD 182
           E G +R+  D R   + G    L RRE  +L YL A  G+ V + ++ + +    YG   
Sbjct: 127 EVGGLRIDLDSRAATLDGAELELTRREFDLLAYLAARPGRVVPRRELLAQVWRQSYG--- 183

Query: 183 EAVEENVVESHISKLRKKL 201
              ++  ++ H+S LR+KL
Sbjct: 184 ---DDQTIDVHLSWLRRKL 199


>gi|113866571|ref|YP_725060.1| response regulator [Ralstonia eutropha H16]
 gi|113525347|emb|CAJ91692.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 229

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +RA  + +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLKRLRARGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 120 AGGGATLMRHGPLAYDQVGRIAYLNEQMLDLSAREIGLLEILLTRSGRLVSKEQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKK+  ++G   + + R LGY ++
Sbjct: 180 E-WGEEVSNNAIEVYVHRLRKKI--EVGGIRIATVRGLGYCLE 219


>gi|75760053|ref|ZP_00740117.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218900246|ref|YP_002448657.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|74492441|gb|EAO55593.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218545333|gb|ACK97727.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKTTPIIIVTDNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSD- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  GE   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223


>gi|47568103|ref|ZP_00238808.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
 gi|47555257|gb|EAL13603.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N R +     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDDHLKTVYGVGYRW 220


>gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 220

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 22/218 (10%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           +AL ++GY   +  DG S    +SL  E +       D++ ++  L  + + +  L R+ 
Sbjct: 18  QALSREGYTVDWVQDGSS--ALHSLLSETF-------DLAVLDLGL-PRMDGLQVLRRLR 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
            + S +P++ ++   + +  +   D+G DD + KP    E+ AR+ A+ RR   S  RA 
Sbjct: 68  DSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRR---SAGRAQ 124

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   I +    +    QG+   L  +E ++L  L++  G+ + +  +   +YG  +E
Sbjct: 125 ALIEHAGISLNPGTQQVSYQGKPVALTPKEYQLLHELLSPPGRVMTRDHLMQLLYGWSEE 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A E N +E HI  LRKK       D + + R +GY ++
Sbjct: 185 A-ESNTLEVHIHHLRKKFST----DLIRTIRGVGYLVE 217


>gi|304405488|ref|ZP_07387147.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345527|gb|EFM11362.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAF-LIGKGEK 59
           +L+DD       +I  F + G++ EGF+     + + +   A+E V  +    ++  G  
Sbjct: 10  LLVDDEP-----HILQFLELGLANEGFDVRTAPDGMTAINLAQEFVPHVIVLDVMMPGMD 64

Query: 60  VLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             E  R+I+   S+V +I ++    +   +     G DD + KP    E+LAR+ A  R 
Sbjct: 65  GFETCRMIKKGGSEVAVIMLTAKDEVDDRVKGLTLGADDYLVKPFSFDELLARIRARLRN 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +      E    R   D R  E+Q  G+   L   E  +L+Y++AN G  ++K+ I   
Sbjct: 125 -QFPMLFGEVKLGRFSIDDRRKEIQYEGQALELSPTEYELLKYMVANHGIVLSKSTILDK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G +D   EEN+VE ++  LR KL +K     + + R  GY ID +
Sbjct: 184 VWG-YDFGGEENIVEVYVRSLRDKLGDK-EHRLIRTLRGAGYRIDLS 228


>gi|284006850|emb|CBA72116.1| two-component system, OmpR family, response regulator BaeR
           [Arsenophonus nasoniae]
          Length = 184

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L + R +R  S +P+I ++        L   + G DD + KP   RE++AR+
Sbjct: 13  LMLPGTDGLSICRQLRQFSDIPIIIVTAKTEEHDRLVGLEIGADDYICKPFSPREVIARI 72

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAK 170
             I RR       A+   +++  D    ++  Q +   L   E R+L++L  + GK  ++
Sbjct: 73  KTILRRC-YRQTVAQNSDLKLIIDDSAYQIHFQHQTVELTPAEFRLLKFLSQHPGKVFSR 131

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            ++ + +Y  +   V +  ++SHI  LR+KL+
Sbjct: 132 DKLLNNLYDDY-RIVTDRTIDSHIKNLRRKLQ 162


>gi|229010082|ref|ZP_04167296.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229056424|ref|ZP_04195837.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229131595|ref|ZP_04260477.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228651821|gb|EEL07776.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228720898|gb|EEL72447.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228751215|gb|EEM01027.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220


>gi|182412142|ref|YP_001817208.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839356|gb|ACB73608.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 241

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +RA S++P+I ++    +   +   + G DD + KP   RE++AR+ A+ RR  
Sbjct: 75  LAVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGT 134

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +  A   G + V    R   +      L   E  +L YL  NRG+ +++ +I     G
Sbjct: 135 RDDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTRG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219
                ++ +  +  I  L  +LR KLG DP     + + R +GYS
Sbjct: 195 -----IDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYS 234


>gi|182417803|ref|ZP_02949118.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237668490|ref|ZP_04528474.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378527|gb|EDT76058.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237656838|gb|EEP54394.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 223

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 20/167 (11%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I ++   S    L   + G DD V+KP + + +LAR+AA+ +R   S
Sbjct: 63  ICREIRKTSDIPIIIVTSRDSDMDELMSMNLGADDFVSKPYNTQILLARIAALLKR---S 119

Query: 123 NNRAETGPIRVFSDGR-----------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              + T    ++++ +           D E++     L + E +IL  L+ N+G  V++ 
Sbjct: 120 GGSSNTSKYLIYNNFKINLSNATISREDKEIE-----LTKNEIKILSCLIENKGSIVSRE 174

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   ++   D  V+++ +  +I++LR+KL      D ++++R LGY
Sbjct: 175 ILMEYLWK-SDYFVDDSTLTVNITRLRRKLEGIGIKDAIETRRGLGY 220


>gi|158338636|ref|YP_001519813.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308877|gb|ABW30494.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 13/149 (8%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +RA    +P++ ++   +    +D  D+G DD V KP    EI AR+ A+ RR 
Sbjct: 60  LAFCRQMRAQGLDIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRG 119

Query: 120 KVSNNRAETGPIRVFSDGR-DPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            ++     + PI  + D + +P       Q E+  L  +E  +LE  + N+ +  ++ QI
Sbjct: 120 PMT-----SPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLELFLRNKRRVFSRAQI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR 202
              ++  ++   EE+ V++HI  LR KL+
Sbjct: 175 LEHLWA-YEVLPEEDTVKAHIKGLRHKLK 202


>gi|49480229|ref|YP_034909.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331785|gb|AAT62431.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220


>gi|107026106|ref|YP_623617.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116692710|ref|YP_838243.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105895480|gb|ABF78644.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116650710|gb|ABK11350.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
          Length = 224

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 10/154 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
            P++ +S    +   ++   +G DD + KP    E+ AR+  + RR +    R ET    
Sbjct: 74  TPVLVMSAMSGVDQRIEGLRAGGDDYLVKPFSLEEMCARIDVLIRR-RPRGARVETVLRA 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187
           G + +    R   +      L   E R+LE++M N G+ + +T IF A++G  FD     
Sbjct: 133 GELALDLVRRRATLGARELTLLPTESRVLEFMMRNAGRVLTRTMIFEAVWGCRFDPGT-- 190

Query: 188 NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           N+++ HI +LRKK+ N+ G  P + + R  GY +
Sbjct: 191 NLIDVHIGRLRKKV-NRPGAAPLIRTIRGSGYML 223


>gi|299143947|ref|ZP_07037027.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518432|gb|EFI42171.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 223

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 80/157 (50%), Gaps = 5/157 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           I+  + +P++ +S        L  F+ G+DD V KP   +E++AR+  I +R +  + N 
Sbjct: 67  IKKINDIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVKRRQRIIENA 126

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E   +++  DGR   V GE   +  +E  +L +L  N    +++ ++ S ++G +D  
Sbjct: 127 VLEFQGLKIDLDGRVVYVDGEKVDMTPKEYDLLVFLATNENIALSRDKLLSKVWG-YDFY 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  V++HI  LR  +++   F  + + R  GY  D
Sbjct: 186 GDDRTVDTHIKMLRNSIKDYRKF--IVTVRGTGYKFD 220


>gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 227

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP++ ++    ++  ++  D+G DD + KP    E+LAR+ A  RR+ 
Sbjct: 66  IEVARRIRKTSNVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRV- 124

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                A TG IRV       +GR+    G    L  +E  +LE L  + GK  ++ +I  
Sbjct: 125 ---TPAITGEIRVADLIINLEGREVYRSGRRIELSNKEFELLELLAKSPGKVFSRFEIEE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NVV+ +I  LRKKL        + + R +GY +
Sbjct: 182 KVWPGYQGG--SNVVDVYIGYLRKKLEGIGERRLIHTVRGVGYVL 224


>gi|222085319|ref|YP_002543849.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722767|gb|ACM25923.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 252

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 5/156 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R     P++ +S    +   +    +G DD + KP    E+LARV  + RR    +    
Sbjct: 95  RKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPDQDVL 154

Query: 128 TGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
                +  D    EV+  G+  PL  RE R+LEYLM N G+ V +T +   ++   FD  
Sbjct: 155 YRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 213

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + NV++ H+S+LR K+        + + R  GY I
Sbjct: 214 -QTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 248


>gi|222084784|ref|YP_002543313.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium radiobacter K84]
 gi|221722232|gb|ACM25388.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium radiobacter K84]
          Length = 211

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +    +G DD V KP    E++ARV A+ R
Sbjct: 46  IELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELMARVKAMLR 105

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  V +     G I +  +      +     L   E R+LE+LMA+  +  +++Q+  
Sbjct: 106 RARPEVLSTVLRCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMASPSRVFSRSQLLD 165

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 166 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 210


>gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
 gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
          Length = 239

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 45/213 (21%)

Query: 11  VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE---KVLELPRII 67
           +KD  I +F  D + L G +  EF   ++S  +   + +  FL  KGE   KVL L    
Sbjct: 43  IKDKEIDMFLVD-IMLPGMDGFEFVRNIRSQEKYKSTPV-IFLSAKGEEFDKVLGL---- 96

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
                                   + G DD + KP   RE+LAR+ A++RR+++S    E
Sbjct: 97  ------------------------ELGADDYITKPFSIRELLARIKAVFRRMQLSTQVKE 132

Query: 128 TGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             P ++ +       D  + +++G+   L   E  +L +L  N GK  ++  +   ++G 
Sbjct: 133 EKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRNVLLDKLWG- 191

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +D   +   V+ HI +LR K+      DP + K
Sbjct: 192 YDYFGDTRTVDVHIRRLRTKIEE----DPSNPK 220


>gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 250

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 14/200 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL + GY  +   DG +    N L+    L + +  D+  ++  L       L++ R++R
Sbjct: 37  ALEEQGYEVITASDGRT--ALNLLQDVATLGTESGFDLVVLDLML--PQVNGLDICRLLR 92

Query: 69  AHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
            ++  VP++ +S   S    +   + G DD + KP   RE++AR  A+ RR   +N    
Sbjct: 93  YNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRALIRRQDFNN--VS 150

Query: 128 TGPIRVFSD-GRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + P+R F D    PE     V+GE   L  +E R+LE  M+   +  ++ Q+   ++G  
Sbjct: 151 SAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWSREQLIDQVWGA- 209

Query: 182 DEAVEENVVESHISKLRKKL 201
           D   +   V+ HI  LR+KL
Sbjct: 210 DFLGDTKTVDVHIRWLREKL 229


>gi|157375725|ref|YP_001474325.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318099|gb|ABV37197.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 230

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 5/145 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ + IR HS +P+I I+        L   + G DD + KP   RE++ARV A+ RR+ 
Sbjct: 66  LEVCKQIRQHSNIPIIMITARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVIRRVV 125

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + N  +   IR+  +G      G    L + E  +   +    G+  ++ Q+   
Sbjct: 126 NQTSSNTNDIQLDGIRLDEEGFKVSKSGFQCELTKVEFYLFHAMFKQPGRIFSRDQLMDI 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           IY      V +  ++SHI K+RKK+
Sbjct: 186 IYD-DRHVVSDRTIDSHIKKVRKKI 209


>gi|83643658|ref|YP_432093.1| phosphate regulon transcriptional regulatory protein phoB [Hahella
           chejuensis KCTC 2396]
 gi|83631701|gb|ABC27668.1| Phosphate regulon transcriptional regulatory protein phoB [Hahella
           chejuensis KCTC 2396]
          Length = 230

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 9/136 (6%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           S++PLI ++        +   + G DD + KP   RE++AR+ A+ RR  V     ET P
Sbjct: 76  SEIPLIMLTAKTEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTAVQG--MET-P 132

Query: 131 IRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           I V     DP       +G+   +   E ++L++ M ++ +   + Q+   ++G  +  V
Sbjct: 133 IEVEGLRLDPVCHRVTAKGDALNMGPTEYKLLQFFMTHQERVYTRGQLLDQVWG-GNVYV 191

Query: 186 EENVVESHISKLRKKL 201
           EE  V+ HI +LRK L
Sbjct: 192 EERTVDVHIRRLRKAL 207


>gi|15894147|ref|NP_347496.1| two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|15023754|gb|AAK78836.1|AE007601_7 Two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|325508275|gb|ADZ19911.1| Two-component response regulator [Clostridium acetobutylicum EA
           2018]
          Length = 231

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 11/148 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           EL + +R  S +P+I IS   S  T +     G DD + KP    ++ AR+ +  RR +K
Sbjct: 65  ELLQKVRGISAMPVIVISAKLSKDTKVRMLKIGADDYITKPFDMDDVDARIYSNLRRYIK 124

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + +    I VF D        +  V G+   L  RE +ILE L+ N+ K  +K  +F
Sbjct: 125 FGKDESFNSKI-VFKDMILDSVAMEVIVNGQRMSLTNREFKILEVLLLNKRKVFSKANLF 183

Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKL 201
            +++   D  + ++N +  HIS LR KL
Sbjct: 184 ESVWE--DTYMGDDNTLNVHISNLRNKL 209


>gi|148544993|ref|YP_001272363.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184154327|ref|YP_001842668.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|148532027|gb|ABQ84026.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183225671|dbj|BAG26188.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R HSQVP+I IS        +    +G DD + KP     +LA++ A+ RR K + +  
Sbjct: 67  VRKHSQVPIIVISAAEIDTNVMHAVAAGADDYIMKPFAMTVLLAKIQALLRRNKQTADAE 126

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E         P+       +   Q     L   E  +L+ L+++R K V+K Q+   ++ 
Sbjct: 127 EIMWDHNSFNPLTNILTNENGTAQ-----LTPTEGSMLQVLLSHRNKTVSKEQLLQWLWQ 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              + + EN +  +IS+LR KL        + ++R LGY
Sbjct: 182 -GGKYLNENTLNVNISRLRTKLSTIGLRQCIHTERGLGY 219


>gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 233

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 11/173 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A+ RR +
Sbjct: 61  LDVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRRSE 120

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +         S      G +++  D    +  G+   L  RE  +L +L  + G+ + + 
Sbjct: 121 LIPDSHVDESSPKELFIGDLQILPDAFVVKKHGKELELTHREFELLHHLATHVGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY I  N
Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYIRNN 232


>gi|228933892|ref|ZP_04096736.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825768|gb|EEM71557.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 235

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 65  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRIVSREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     DP+++ R +GY   I W+
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIEDPIETIRSVGYRLHITWD 230


>gi|229107385|ref|ZP_04237252.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228676057|gb|EEL31035.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 223

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+  ++   S    L   + G DD + KP +   +LARV  I RR   +
Sbjct: 63  ICREIRKTSDIPIFMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +T  I ++ D            Q +   L + E +IL  L+ NRG  V +  +   
Sbjct: 120 SGDFKTNHILIYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           ++   D  V+++ +  +I++LRKKL  ++G  +P+ ++R LGY
Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLE-EIGIENPIATRRSLGY 220


>gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6]
 gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
          Length = 251

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 11/153 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 78  LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 137

Query: 119 -LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            + V    A++ P       + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 138 PMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITR 197

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 198 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 229


>gi|320094688|ref|ZP_08026444.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978373|gb|EFW09960.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 241

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 5/158 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+  A    P++ ++    ++  +     G DD V KP    E++AR+ AI RR    ++
Sbjct: 79  RLRDAGLTTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMGGDD 138

Query: 125 ---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +   G + +  D  + +  G    L   E ++L YL+ N G+ V+K QI   ++  +
Sbjct: 139 EDGKLRVGDLVIDEDAHEVKRAGVDIDLSPTEFKLLRYLVINAGRVVSKMQILDHVWE-Y 197

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           D   E  +VES+IS LR+KL       + + +KR +GY
Sbjct: 198 DWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGY 235


>gi|299132545|ref|ZP_07025740.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298592682|gb|EFI52882.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 221

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 97/200 (48%), Gaps = 5/200 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61
           +LI+D  ++ D  IA    +G++++   +    E   ++    +  ++  L G+ G  +L
Sbjct: 4   LLIEDDRMIGDSLIAALKREGMTVDWVRTGADGEDALANGGHGLVLLDIGLPGRSGVDLL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +  R  RA +  P++ I+    +   +   D G DD + KP   RE+LAR+ A+ RR   
Sbjct: 64  KDAR--RAGNSTPVLIITARDGVDDRIIGLDVGADDYIVKPFEMRELLARMRAVLRRHAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +    G + +  +  +   +G    LP RE  ++  L    G  +++++I   IYG 
Sbjct: 122 AAQSILIAGDVTLDLESHEATYRGTTAVLPAREFALMHALAERPGAILSRSRIEERIYG- 180

Query: 181 FDEAVEENVVESHISKLRKK 200
           + E VE N ++  I  +RKK
Sbjct: 181 WGEEVESNAIDFLIHSIRKK 200


>gi|295097669|emb|CBK86759.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 220

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G     G++G +L+   +    + L  S    +  ++  L  K    L
Sbjct: 3   LLIVEDDLLLQEGLALALGNEGYALDCATTAAEADALIQSGEYSLVILDLGLPDKDGATL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R   + P++ ++   +++  ++  DSG DD + KP    E+ ARV A+ RR + 
Sbjct: 63  -LCQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N    G I +    +    Q +   +  +E  +L  L+   G+ V +  +   IY  
Sbjct: 122 HSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYSW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+    KLG D + + R +GY ++
Sbjct: 182 QDDP-GSNTLEVHIHNLRR----KLGKDRIKTVRGVGYRLE 217


>gi|289422899|ref|ZP_06424728.1| two-component system, response regulator [Peptostreptococcus
           anaerobius 653-L]
 gi|289156686|gb|EFD05322.1| two-component system, response regulator [Peptostreptococcus
           anaerobius 653-L]
          Length = 217

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 83/161 (51%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ ++ ++  
Sbjct: 59  LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNY 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              ++ E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++  
Sbjct: 119 GHLDKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNSGQVLTRMQIIDYVWKD 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 179 SEEIPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215


>gi|237747933|ref|ZP_04578413.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
 gi|229379295|gb|EEO29386.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
          Length = 233

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 14/162 (8%)

Query: 67  IRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           IR H ++   P+I ++     +  +   D G DD + KP   +E++AR+ A+ RR KV  
Sbjct: 71  IREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRR-KVP- 128

Query: 124 NRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +RA++  +R  S   DPE     + G    +   E ++L++LMAN  +  +++Q+   ++
Sbjct: 129 DRAKS-LLRAGSVTLDPESCQVNIDGSDVEMGNSEFKLLKFLMANPDRVFSRSQLLDKVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +EE  V+ H+ +LRK L+ +     V + R +GY +
Sbjct: 188 S-NQLDIEERTVDVHVLRLRKALKGQENL--VRTVRGMGYML 226


>gi|237732127|ref|ZP_04562608.1| transcriptional response regulatory protein [Citrobacter sp. 30_2]
 gi|226907666|gb|EEH93584.1| transcriptional response regulatory protein [Citrobacter sp. 30_2]
          Length = 240

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSEVPIMMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K      +     P+ +  +GR     +G++  L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQQMDADSPL-IVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555]
 gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016]
 gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM
           555]
 gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 4/145 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR   + P+I ++        +   + G DD + KP   +E+LAR+ A+ RR  
Sbjct: 65  IDVLKWIRKDYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRRYS 124

Query: 121 VSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V N   E       +   +      + E   +P +E  +L YL  N+ +   + Q+   +
Sbjct: 125 VDNENKEVLKFEQLTIDINSYTVTYRNEDIKMPPKEFELLYYLANNKNRVFTREQLLCEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G +D   +   V+ H+ +LR+KL+
Sbjct: 185 WG-YDYPGDSRTVDVHVKRLREKLQ 208


>gi|146309134|ref|YP_001189599.1| DNA-binding response regulator CreB [Pseudomonas mendocina ymp]
 gi|145577335|gb|ABP86867.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + +R  S+VP+I ++        +   + G DD V KP   RE+ ARV  I +R+ 
Sbjct: 61  FEVCKRLRRFSEVPVIFLTARSEEIDRVVGLEIGADDYVVKPFSPREVAARVKVILKRMA 120

Query: 121 VSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                A  G    F            G+   L R E R+L  L+    +  ++ Q+  A+
Sbjct: 121 PRETPA-AGAASAFQIDDAAFCIHYHGQALSLTRHEFRLLRTLLGQPRRVYSREQLLDAL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
            G+  E   E  ++SHI  LR KLR      +P+ + R LGYS
Sbjct: 180 -GVASEVGYERNIDSHIKSLRAKLRAIAPAEEPIQTHRGLGYS 221


>gi|126700886|ref|YP_001089783.1| two-component response regulator [Clostridium difficile 630]
 gi|255102435|ref|ZP_05331412.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308339|ref|ZP_05352510.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|296451936|ref|ZP_06893652.1| response regulator [Clostridium difficile NAP08]
 gi|296879670|ref|ZP_06903646.1| response regulator [Clostridium difficile NAP07]
 gi|115252323|emb|CAJ70164.1| Two-component response regulator [Clostridium difficile]
 gi|296259250|gb|EFH06129.1| response regulator [Clostridium difficile NAP08]
 gi|296429339|gb|EFH15210.1| response regulator [Clostridium difficile NAP07]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 95/208 (45%), Gaps = 23/208 (11%)

Query: 15  YIALFGDDGVSLEGFNSLEFEE-----WLQSSAREDVSAIEAFLIGKGEKVLELPRI--- 66
           Y  L  DD V +   N + F       +   +A++ +  +E+ ++      + LP I   
Sbjct: 2   YNLLVVDDDVDILNINQIYFSNIGFNVYTSETAKDAMDIVESIVLDCIILDISLPDIDGY 61

Query: 67  -----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                I+    +P+I +S+Y   +  +  F +G DD + KP   +E+  R   IY R++ 
Sbjct: 62  KMCNDIKEKVNIPIIFLSNYEHEEEKVRGFLAGGDDYITKPYSLKELELR---IYARMRQ 118

Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N      +  FS      + R     GE   L   E  IL +L  N+ +  +K +I++
Sbjct: 119 YKNITSVPNVLKFSALVINVNSRKVTFDGESIDLTTMEFEILLFLAENKEQVFSKIEIYN 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ + D   +++ V+ HI+++RKK+ +
Sbjct: 179 QVWKMPDIG-DQHTVQVHIAQMRKKINS 205


>gi|332655153|ref|ZP_08420894.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516013|gb|EGJ45622.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 222

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP++ ++     + TL  +  G DD V KP     +LA++ A+ RR +  
Sbjct: 63  VCRAVRRQSSVPILFLTALGGEEETLRGYALGADDYVTKPFSLAVLLAKLQALIRRSRGE 122

Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G I+V +  R     G+   L  RE  +L  L+ N+G+ +++ Q+   ++GL
Sbjct: 123 RKTGVLSCGAIQVDTGARRCTAAGQEIKLSPREYELLLCLLRNQGQVLSRAQLLDKVWGL 182

Query: 181 FDEAVEENVVESHISKLRKKL 201
             E  ++  V+  +  LR  L
Sbjct: 183 DFEG-DDRAVDVRVRSLRAAL 202


>gi|311744153|ref|ZP_07717958.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312508|gb|EFQ82420.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 219

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           L R+ R    +P+I ++   S+  T+   + G  D ++KP    E+LARV    R     
Sbjct: 64  LERLRRERPGLPVIVLTARDSVTDTVAALEGGAADYMSKPFRFDELLARVRLRLRVASEP 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++  E G +R+    R   V G    L  RE  + E LM +RG+ +++ Q+ S ++G 
Sbjct: 124 AADDAVEVGDVRLDLRTRRTTVAGREVDLSAREFTLAEVLMRHRGQVLSREQLLSQVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D     NVV+ ++  LRK    KLG D V + R +GY +D
Sbjct: 183 YDFDPGSNVVDVYVGYLRK----KLGADLVSTVRGVGYRVD 219


>gi|285019588|ref|YP_003377299.1| two component system regulatory protein [Xanthomonas albilineans
           GPE PC73]
 gi|283474806|emb|CBA17305.1| probable two component system regulatory protein [Xanthomonas
           albilineans]
          Length = 241

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 23/178 (12%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL   R +R  S VP+I ++        +   D+G +D V KP   +E++AR+  + 
Sbjct: 71  GHSVL---RELRQWSSVPVIMLTVRAGEAEKVQALDAGANDYVTKPFGVQELMARIRVLL 127

Query: 117 RRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R ++ +   AE     VF DG        R+  ++GE  PL R+E  +L  L+ + G+ V
Sbjct: 128 R-MQPTTGEAEP----VFDDGHLHIHIGLREVRLEGEPLPLSRKEYALLALLLRHSGRVV 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK------LGFDPVDSKRFLGYSI 220
            + Q+   ++G   +  + + +   + KLR+KL +       +  +P    RF+G S 
Sbjct: 183 TQPQLLRELWGPTHQD-DTHYLRILVGKLRQKLGDSAVAPRYIATEPGVGLRFIGMSC 239


>gi|229165596|ref|ZP_04293370.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617879|gb|EEK74930.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220


>gi|205352249|ref|YP_002226050.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272030|emb|CAR36874.1| response regulator [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326627294|gb|EGE33637.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 248

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 40  RGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 88

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 89  RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 148

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 149 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 206

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + R +GY +
Sbjct: 207 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|116623411|ref|YP_825567.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226573|gb|ABJ85282.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 22/220 (10%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSARE-----DVSAIEAFLIGKGEKVLELPR-IIRA 69
           IAL  +D +++EG++     + + ++ R      D+  ++  L GK    LE+ R + RA
Sbjct: 13  IALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGK--DGLEVCRELRRA 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--RAE 127
             + P++ ++        +   + G DD V KP   +E+ AR+ A+ RR     +     
Sbjct: 71  GLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRASGDTDLETCS 130

Query: 128 TGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            G + V F+ G +  ++G+   L   E ++L+  +  RG+ +++ Q+ +A +G  D    
Sbjct: 131 FGDVEVDFARG-ELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAATWG-RDTFTS 188

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
             +V++HI+ LR+    K+G DP + +     R LGY  D
Sbjct: 189 ARIVDNHIANLRR----KIGDDPAEPRYLRNVRGLGYRFD 224


>gi|320527553|ref|ZP_08028733.1| putative subtilin biosynthesis regulatory protein SpaR
           [Solobacterium moorei F0204]
 gi|320132110|gb|EFW24660.1| putative subtilin biosynthesis regulatory protein SpaR
           [Solobacterium moorei F0204]
          Length = 230

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 9/147 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P++ +S   +    +     G DD ++KP   RE+LAR+ A  RR + 
Sbjct: 61  EVCRKIRDEVLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRREQR 120

Query: 122 SNN-RAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S    AE    R++ +           ++ GE  PL +RE  I+E L  + G+  ++  I
Sbjct: 121 SQYINAEKKRTRLYFNELSIDLLEHSVKIDGETIPLSKRECDIVELLALHAGQVFSREHI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200
           +  ++G +D   +   V  HI K+RKK
Sbjct: 181 YERVWG-YDSDGDSYTVVEHIRKIRKK 206


>gi|297563588|ref|YP_003682562.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848036|gb|ADH70056.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 234

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 5/145 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R +RA S V ++ ++   + +  L   D G DD V KP   RE++ARV  + RR +
Sbjct: 62  LDACRALRAESDVAVLMLTARSTEEDLLTGLDLGADDYVTKPYSPRELMARVRTLLRRSR 121

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + A+     GP+ V        V G        E ++L  L A  G+ + + Q+   
Sbjct: 122 RDPDDADRVLRAGPVAVDPSRHAVRVDGVPVTCTPAEFQLLAALAAQPGRVLTRAQLLEH 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           I+G+    + E  ++ H+  LR+KL
Sbjct: 182 IHGM-SRFITERTIDVHVKNLRRKL 205


>gi|281491759|ref|YP_003353739.1| nisin biosynthesis two-component system, response regulator NisR
           [Lactococcus lactis subsp. lactis KF147]
 gi|281375473|gb|ADA64983.1| Nisin biosynthesis two-component system, response regulator NisR
           [Lactococcus lactis subsp. lactis KF147]
          Length = 229

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 12/170 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR     P+I +S   + +  ++    G DD + KP   ++++A+V A  +R + 
Sbjct: 63  EICKRIRREISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 122

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S  R + GPI  + + R   V G+  PL  RE  ILE L     K   +  I
Sbjct: 123 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  +Y  +  A+  ++ E +I ++R K       +P+ + R LGY   W+
Sbjct: 183 YDDVYDEYSNALFRSISE-YIYQIRSKF-APYDINPIKTVRGLGYQ--WH 228


>gi|241889065|ref|ZP_04776369.1| sensory transduction protein BceR [Gemella haemolysans ATCC 10379]
 gi|241864314|gb|EER68692.1| sensory transduction protein BceR [Gemella haemolysans ATCC 10379]
          Length = 222

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 12/161 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS        +   + G DD + KP     + A++ A+ RR+    N +
Sbjct: 67  IRKLSKVPIIFISSANDDMNIVMAMNIGADDFIEKPFKLVVLKAKIEALLRRVY---NFS 123

Query: 127 ETGPIRVFSD-----GRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  + V+ D      RD  + Q  +  L + E +I   L+ NR K V + +I +A++  
Sbjct: 124 GSSNLVVYKDVIFDMSRDEVKYQDNLVELTKNEGKIFTVLLENREKIVTREEIITALWQS 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            D  ++EN +  +I++LR KL++ +G D  + +K+  GY +
Sbjct: 184 -DNFIDENTLSVNINRLRSKLKS-IGIDEFITTKKGKGYIV 222


>gi|227364137|ref|ZP_03848234.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325683340|ref|ZP_08162856.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|227070776|gb|EEI09102.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977690|gb|EGC14641.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 239

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R HSQVP+I IS        +    +G DD + KP     +LA++ A+ RR K + +  
Sbjct: 80  VRKHSQVPIIVISAAEIDTNVMHAVAAGADDYIMKPFAMTVLLAKIQALLRRNKQTADAE 139

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E         P+       +   Q     L   E  +L+ L+++R K V+K Q+   ++ 
Sbjct: 140 EIMWDHNSFNPLTNILTNENGTAQ-----LTPTEGSMLQVLLSHRNKTVSKEQLLQWLWQ 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              + + EN +  +IS+LR KL        + ++R LGY
Sbjct: 195 -GGKYLNENTLNVNISRLRTKLSTIGLRQCIHTERGLGY 232


>gi|167757089|ref|ZP_02429216.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402]
 gi|167703264|gb|EDS17843.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402]
          Length = 223

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL  +IR H   P+I ++   S +  ++    G DD + KP    E+ ARV A  RR K
Sbjct: 60  LELCTMIREHVNCPIIFLTARISSRDMINGLMLGGDDYITKPFSMDELFARVQAHLRREK 119

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S++++    T  + +    R   ++ +      +E  I++ L  N G+   + +I+  +
Sbjct: 120 RSSHKSRGHFTRELIIDYSQRTVIIKNKKIDFSNKEFEIIKLLSMNAGQIFDREKIYEVV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G F+   +  V++ HI K+R KL
Sbjct: 180 WG-FEANGDSAVIKEHIRKIRMKL 202


>gi|238798946|ref|ZP_04642410.1| Two-component system response regulator [Yersinia mollaretii ATCC
           43969]
 gi|238717216|gb|EEQ09068.1| Two-component system response regulator [Yersinia mollaretii ATCC
           43969]
          Length = 227

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 18/211 (8%)

Query: 24  VSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80
           +S EGFN+   L  +E +  +   D +A+   ++      +++ R +R  S++P+I ++ 
Sbjct: 20  LSGEGFNAELVLTGKEGIDRALSGDYTALILDIMLPDMSGIDVLRQVRKKSRLPIIMLTA 79

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-------GPIRV 133
                  +   + G DD + KP + RE++AR+ A+ RR     + + T       G + +
Sbjct: 80  KGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDEHPDLSSTDDGVITHGDLTL 139

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
               R  E QG  F L   E  +LE L+ +  + V K ++     G   EA + + V+ H
Sbjct: 140 NPSTRSSEWQGTSFDLTASEFNLLELLLRSPDRVVTKDELSDKGLGRPREAYDRS-VDVH 198

Query: 194 ISKLRKKLR----NKLGFDPVDSKRFLGYSI 220
           IS +R+KL     N L  + V   R +GY I
Sbjct: 199 ISNIRQKLAALPGNTLNIETV---RSIGYRI 226


>gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus pseudintermedius ED99]
          Length = 234

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 26/224 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--AREDVSAIEAFLIGKGEKVLELPRII 67
           L + GY+     DG           EE LQ     + D+  ++  L  K    +E+ + I
Sbjct: 22  LEQSGYVVEVAQDG-----------EEALQKEKETKPDLIVLDVMLPKKDG--IEVCKTI 68

Query: 68  RA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125
           R+  +QVP++ ++        +   + G DD + KP   RE++ARV AI RR   V + R
Sbjct: 69  RSDKNQVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSSLVDHVR 128

Query: 126 AE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            E        G IR+  D  +     E+  L  +E  +L YL+  +G+ + +  + ++++
Sbjct: 129 KEEEDEDIVIGSIRIRPDFFEVYRNDELLELTPKEFELLLYLVERQGRVITREHMLNSVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++ A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 189 N-YEFAGDSRIVDVHISHLRDKLEENPKQPQFIKTVRGLGYKLE 231


>gi|304384695|ref|ZP_07367041.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328889|gb|EFL96109.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 8/171 (4%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+++  ED  AI   L+      +E+ R IR     P+I ++   S+   +   D G DD
Sbjct: 38  LEAALSEDFDAILLDLMLPEINGIEVCRRIRREKITPIIMMTARDSIIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            + KP    E+LAR+ A+ RR+ +            E   I +  + R  +   EV  L 
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVDLEEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLT 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +RE  +L  LM N     ++  + S ++GL D  VE NVV+ +I  LR K+
Sbjct: 158 KREYELLLLLMENVNVVQSRETLLSKVWGLED-GVETNVVDVYIRYLRNKI 207


>gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
 gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
          Length = 240

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 12/194 (6%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSG 94
           E ++ +  E    I   ++  G    E+ R +R A    P++ ++   + +  +    +G
Sbjct: 45  EAIEKAENEQPDLIVLDVMMPGMDGFEVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAG 104

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF------P 148
            DD V KP    E++AR+ AI RR +  N + E   I    D        EVF       
Sbjct: 105 GDDYVTKPFSLDEVIARIRAILRRSR--NAQEEDDAILRVDDLSLNIDTHEVFLGDEEID 162

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGF 207
           L   E  +L YLM N  + ++K QI   ++  +D   + ++VES+IS LR+K+  N+ G 
Sbjct: 163 LSPTEFNLLHYLMLNANRVLSKAQILDHVWE-YDFNGDSSIVESYISYLRRKIDNNREGH 221

Query: 208 DP-VDSKRFLGYSI 220
           +P + +KR +GY I
Sbjct: 222 EPLIHTKRGVGYMI 235


>gi|295102500|emb|CBL00045.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           +F+L DD +L+  G    F   G +L+   +L   E L S  + D+  ++  L  G G  
Sbjct: 4   LFLLEDDLSLIS-GLTFAFKKQGFALDTARTLAEAEALWSDRKYDLLVLDVSLPDGSG-- 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             +  + +R  S VP++ ++        +   D G DD + KP     +L+RV A+ RR 
Sbjct: 61  -FDFCQKVRRTSNVPILFLTASDEEMNIIMGLDMGGDDYLTKPFKLGVLLSRVNALLRRA 119

Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             S+      E+G I V          G +  L   E ++L + M +    ++K QI  A
Sbjct: 120 NASSAGEPVLESGSITVRLLQGQAYKNGILLELTGAEYKLLCFFMQHPNAVLSKEQILDA 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL---GYSIDWN 223
           ++    + ++ + +  +I +LR K+ +    DP   +  L   G    WN
Sbjct: 180 LWDCDGDYIDSSALTVYIRRLRMKIED----DPGKPQMLLTVRGMGYKWN 225


>gi|262165813|ref|ZP_06033550.1| two-component system response regulator QseB [Vibrio mimicus VM223]
 gi|262025529|gb|EEY44197.1| two-component system response regulator QseB [Vibrio mimicus VM223]
          Length = 219

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 22/219 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL + G++     DG+  +       EEW       DV  ++  L  K + +  L  I  
Sbjct: 19  ALDQTGWVPELSQDGI--DALYRATAEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +  
Sbjct: 69  ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             +   S D R  +V  +G+   L   E +++ Y M N  K +++T++   IY   FD  
Sbjct: 127 MQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEHIYKQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + N +E  I ++RK    K+  D + + R LGY +  N
Sbjct: 186 -DSNTIEVFIGRIRK----KIAPDVIKTVRGLGYQLHAN 219


>gi|237735839|ref|ZP_04566320.1| two-component system response regulator [Mollicutes bacterium D7]
 gi|229381584|gb|EEO31675.1| two-component system response regulator [Coprobacillus sp. D7]
          Length = 218

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL  +IR H   P+I ++   S +  ++    G DD + KP    E+ ARV A  RR K
Sbjct: 55  LELCTMIREHVNCPIIFLTARISSRDMINGLMLGGDDYITKPFSMDELFARVQAHLRREK 114

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S++++    T  + +    R   ++ +      +E  I++ L  N G+   + +I+  +
Sbjct: 115 RSSHKSRGHFTRELIIDYSQRTVIIKNKKIDFSNKEFEIIKLLSMNAGQIFDREKIYEVV 174

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G F+   +  V++ HI K+R KL
Sbjct: 175 WG-FEANGDSAVIKEHIRKIRMKL 197


>gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K  N   
Sbjct: 68  IREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTNT 127

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY- 178
                  E G + V +D R   ++G    L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 128 DNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIYEAVWK 187

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
             F ++  +N V  HI+K+R K+
Sbjct: 188 DAFYKS--DNTVMVHITKIRDKI 208


>gi|152996884|ref|YP_001341719.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837808|gb|ABR71784.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 226

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 14/148 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S VP+I ++        L   + G DD V KP   REI+ARV A  RR++
Sbjct: 61  VEICKQVRQFSGVPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREIVARVKANLRRVE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  ++AE+      +DG D +V       +G++  L   E ++L+ L+   G+   +  I
Sbjct: 121 L--DQAESPR----TDGFDLDVDRLRATYKGDLIDLTTVEFQLLQLLIKEPGRVFGRDLI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
             +IY      V +  ++SHI KLRKK+
Sbjct: 175 MKSIYA-DSRVVSDRTIDSHIKKLRKKI 201


>gi|21241807|ref|NP_641389.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78046628|ref|YP_362803.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926361|ref|ZP_08187691.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|325927126|ref|ZP_08188393.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|21107184|gb|AAM35925.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78035058|emb|CAJ22703.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325542509|gb|EGD13984.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|325543254|gb|EGD14687.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
          Length = 229

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 14/182 (7%)

Query: 33  EFEEWLQSSAREDVSAI-----EAFLIG---KGEKVLELPRIIRAHS---QVPLIGISDY 81
           EFE      ARE  +AI     +  L+     G   L+L R  R      ++P+I ++  
Sbjct: 26  EFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDLARRWRKEQLTREIPIIMLTAR 85

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141
                 +   ++GVDD V KP   RE+LAR+ A+ RR +  +        ++  DG    
Sbjct: 86  GEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVGKLRIDGAAHR 145

Query: 142 VQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
           V     P+P    E R+L + M +  +   +TQ+   ++G     VEE  ++ HI +LRK
Sbjct: 146 VFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERTIDVHIRRLRK 204

Query: 200 KL 201
            L
Sbjct: 205 TL 206


>gi|320547404|ref|ZP_08041692.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320447949|gb|EFW88704.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 230

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 8/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   +  +I ++   S+   +   D G DD + KP    E+LARV A++RR + 
Sbjct: 63  EITRRLRLEKETSIIMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQEA 122

Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++   + G        +R+    R      +   L +RE  +L  L++N  + + + ++ 
Sbjct: 123 NSEHDKEGQAKEGLLGLRLNPQNRSAVRGDDEISLTKREYDLLSVLLSNVNRVMTREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++++  +D  +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 ASVWR-YDTDIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYII 227


>gi|256370539|ref|YP_003108050.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           microti CCM 4915]
 gi|256000702|gb|ACU49101.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           microti CCM 4915]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +     G DD V KP    E+LARV A+ R
Sbjct: 64  IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         LKV +   +    RV+   ++ EV      L   E R+LEY M + G+  
Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++Q+   ++G  D  V++  V+ H+ +LRK +      DP+ + R  GYS
Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAADPIRTVRGAGYS 226


>gi|229073674|ref|ZP_04206788.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228709461|gb|EEL61521.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +       
Sbjct: 64  VCRRIRKTSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYSS 123

Query: 119 -LKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + V+N +      I +    R   +  E   L   E  IL YLM N+G  + + Q+ + 
Sbjct: 124 VISVTNEDTLMNSGIYIHFPSRTATLDKEAISLTHTEFEILTYLMQNQGIVITREQLITK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           I+G ++ A ++  + SHI  LR KL  K
Sbjct: 184 IWG-YEFAGDDRTINSHIRNLRHKLGKK 210


>gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 237

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCKKLRYKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  S+N A+      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSSNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFQNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218


>gi|330811056|ref|YP_004355518.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379164|gb|AEA70514.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 252

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 16/179 (8%)

Query: 39  QSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           Q+   E    I   L+  GE  L+L R +RA S +P++ ++        +   + G DD 
Sbjct: 60  QAMQAEHFDVIVLDLMLPGEDGLQLCRWLRAESDIPILMLTARCEPTDRIIGLELGADDY 119

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPR 151
           + KP   RE++AR+  I RR  V ++R+E      F + R   V        G V PL  
Sbjct: 120 MAKPFEPRELVARIQTILRR--VRDDRSEQRANIRFDNWRLNSVLRQLISADGLVVPLSN 177

Query: 152 RERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            E R+L ++   R +RV ++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 178 AEFRLL-WVFIERPRRVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 230


>gi|326559342|gb|EGE09769.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 7169]
          Length = 230

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 82/172 (47%), Gaps = 6/172 (3%)

Query: 52  FLIGKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
           +++  GE  ++  R ++   A + +P+I ++        +   D+GVDD + KP   RE+
Sbjct: 54  WMMPHGESGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTREL 113

Query: 109 LARVAAIYRRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           ++RV A+ RR  +   +   + G + + +  +     G    +   E R+L + + +  +
Sbjct: 114 ISRVRAVLRRTGIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSER 173

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              + QI  A++G  +  ++E  ++ HI +LRK L        + + R  GY
Sbjct: 174 AYTRAQILDAVWG-GNVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGY 224


>gi|323137186|ref|ZP_08072265.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322397544|gb|EFY00067.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 230

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 8/154 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P + +S    +   +    +G DD + KP    E+LARV A+ RR +V     ET   
Sbjct: 75  ETPALILSALGQVDDRVKGLRAGGDDYLPKPYSFSELLARVEALARR-RVGPRGEETHYR 133

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            G + +        V G+   L  RE R+LEYLM N G+ V +T +   ++   FD   +
Sbjct: 134 VGDLELDRLSHKVTVGGQEIALQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP--Q 191

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            NV++ HIS+LR K+        + + R  GY I
Sbjct: 192 TNVIDVHISRLRAKIDKGRENPLLHTIRGAGYMI 225


>gi|300947806|ref|ZP_07161962.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300452626|gb|EFK16246.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
          Length = 240

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|229097656|ref|ZP_04228614.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228685795|gb|EEL39715.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----- 117
           + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +       
Sbjct: 64  VCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSS 123

Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++  ++    +G I V    R   + GE   L   E  IL Y M N+G  +++ Q+ +
Sbjct: 124 AVKVLTADTLTSSG-IHVHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204
            I G ++ A ++  + SHI  LR KL  K
Sbjct: 183 KILG-YEFAGDDRTINSHIRNLRHKLGQK 210


>gi|225077278|ref|ZP_03720477.1| hypothetical protein NEIFLAOT_02337 [Neisseria flavescens
           NRL30031/H210]
 gi|224951422|gb|EEG32631.1| hypothetical protein NEIFLAOT_02337 [Neisseria flavescens
           NRL30031/H210]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 14/167 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I      +P++ ++    L + L+  D G DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LAQIRSGGCTIPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRR---H 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +A+T    G I +       EV G  +   L  +E  +L+ L+   G  ++++ +   
Sbjct: 120 GGQAQTLLSNGIITLNPSTHQAEVVGQEQAIMLSNKEFAVLQALLLRPGMILSRSDLEDK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IYG + E VE N V+  I  LRK    KLG + + + R +G+ +  N
Sbjct: 180 IYG-WGEEVESNAVDFLIHALRK----KLGKEAIQNVRGVGWLVAQN 221


>gi|239813409|ref|YP_002942319.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239799986|gb|ACS17053.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 237

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           S+ P++ ++        ++  ++G DD +  P+   E+ ARV A+ RR   + +  E   
Sbjct: 72  SRAPILFVTTTRDETAVVEGLNAGADDFMVAPVRATELEARVNALLRRSYPAQHETELVF 131

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           GP   +   R  +V G    L  RE  +  +L  N G+ +++  +  A++G+   A+  +
Sbjct: 132 GPYHFYPPARVLKVNGTPVELKNREYALALFLFQNLGRLLSREHLHEAVWGVGTAALSRS 191

Query: 189 VVESHISKLRKKL 201
            +++HIS+LR KL
Sbjct: 192 -LDTHISRLRTKL 203


>gi|222110688|ref|YP_002552952.1| winged helix family two component heavy metal response
           transcriptional regulator PhoB [Acidovorax ebreus TPSY]
 gi|221730132|gb|ACM32952.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 235

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 14/172 (8%)

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+  L+L R  RA S   Q+P++ ++        +   D+G DD + KP   +E+LAR+ 
Sbjct: 60  GQSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 114 AIYRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           A+ RR    +VS++    G + + +       QG+   +   E ++L YLM +  +  ++
Sbjct: 120 AVLRRRAPEQVSDS-VSIGELVLDAATYRVSYQGQQLKVGPTEFKLLHYLMKHPERVHSR 178

Query: 171 TQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   I+G  +F   +EE  V+ H+ +LR+ L   +G   V++ R  GY +
Sbjct: 179 AQLLDKIWGDHVF---IEERTVDVHVKRLREAL--GVGGAMVETVRGAGYRL 225


>gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42]
 gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42]
          Length = 231

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 7/150 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  + IR  S VP++ ++   S     +   +G DD + KP    E+ ARV A  RR  
Sbjct: 61  IETCQHIRKTSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYT 120

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   + E        G +RV  +  +   + +   L   E RIL+ LM+ R K  +   I
Sbjct: 121 IYQEKKEQEETFLIGGNLRVSEEFNEVYKEEQQIKLSDLEYRILKLLMSKRNKIFSAQNI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + +++G        N V  HI KLR K+ +
Sbjct: 181 YESVWGQPYFYCSNNTVMVHIRKLRSKIED 210


>gi|49482887|ref|YP_040111.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257424777|ref|ZP_05601204.1| response regulator protein graR [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427446|ref|ZP_05603845.1| response regulator protein graR [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257430077|ref|ZP_05606461.1| response regulator protein graR [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257432779|ref|ZP_05609139.1| response regulator protein graR [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257435683|ref|ZP_05611731.1| response regulator protein graR [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903251|ref|ZP_06311142.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905037|ref|ZP_06312895.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282910303|ref|ZP_06318107.1| response regulator protein graR [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282913496|ref|ZP_06321285.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918449|ref|ZP_06326186.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus C427]
 gi|282923414|ref|ZP_06331094.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus C101]
 gi|283957459|ref|ZP_06374912.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500542|ref|ZP_06666393.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509489|ref|ZP_06668200.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus M809]
 gi|293524075|ref|ZP_06670762.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M1015]
 gi|297590450|ref|ZP_06949089.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|81696526|sp|Q6GJ11|GRAR_STAAR RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|49241016|emb|CAG39686.1| putative response regulator protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257272347|gb|EEV04470.1| response regulator protein graR [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275639|gb|EEV07112.1| response regulator protein graR [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257279274|gb|EEV09875.1| response regulator protein graR [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257282194|gb|EEV12329.1| response regulator protein graR [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284874|gb|EEV14993.1| response regulator protein graR [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314282|gb|EFB44672.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus C101]
 gi|282317583|gb|EFB47955.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus C427]
 gi|282322528|gb|EFB52850.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325695|gb|EFB56003.1| response regulator protein graR [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282331862|gb|EFB61373.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282596206|gb|EFC01167.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790910|gb|EFC29725.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290921038|gb|EFD98099.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095547|gb|EFE25808.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467586|gb|EFF10101.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus M809]
 gi|297576749|gb|EFH95464.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|312438920|gb|ADQ77991.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|315194029|gb|EFU24423.1| putative response regulator protein [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 224

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 9/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+     
Sbjct: 64  RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  T    V    +D   +G +   L + E  ILE L+  + + V++  I +A++  
Sbjct: 124 EEKRTLTWQDAVIDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
            DEA V +N +  ++++LRKKL +++G D  +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKL-SEIGMDSAIETKVGKGY 220


>gi|15832141|ref|NP_310914.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. Sakai]
 gi|168750408|ref|ZP_02775430.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757981|ref|ZP_02782988.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761825|ref|ZP_02786832.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769836|ref|ZP_02794843.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775469|ref|ZP_02800476.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782366|ref|ZP_02807373.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788752|ref|ZP_02813759.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC869]
 gi|168799035|ref|ZP_02824042.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC508]
 gi|195938273|ref|ZP_03083655.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806650|ref|ZP_03248987.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817189|ref|ZP_03258281.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820121|ref|ZP_03260441.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398758|ref|YP_002271322.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7
           str. EC4115]
 gi|217329588|ref|ZP_03445667.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           TW14588]
 gi|254793864|ref|YP_003078701.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. TW14359]
 gi|261225071|ref|ZP_05939352.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257583|ref|ZP_05950116.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O157:H7 str. FRIK966]
 gi|13362356|dbj|BAB36310.1| transcriptional response regulatory protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|187768926|gb|EDU32770.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015386|gb|EDU53508.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000071|gb|EDU69057.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355122|gb|EDU73541.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361284|gb|EDU79703.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367779|gb|EDU86195.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189371573|gb|EDU89989.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC869]
 gi|189378506|gb|EDU96922.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC508]
 gi|208726451|gb|EDZ76052.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730808|gb|EDZ79498.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740244|gb|EDZ87926.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160158|gb|ACI37591.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7
           str. EC4115]
 gi|209747942|gb|ACI72278.1| transcriptional response regulatory protein [Escherichia coli]
 gi|209747944|gb|ACI72279.1| transcriptional response regulatory protein [Escherichia coli]
 gi|209747946|gb|ACI72280.1| transcriptional response regulatory protein [Escherichia coli]
 gi|217317356|gb|EEC25785.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593264|gb|ACT72625.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O157:H7 str. TW14359]
 gi|320191754|gb|EFW66402.1| Response regulator BaeR [Escherichia coli O157:H7 str. EC1212]
 gi|320641378|gb|EFX10833.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. G5101]
 gi|320646748|gb|EFX15635.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H- str. 493-89]
 gi|320652025|gb|EFX20378.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H- str. H 2687]
 gi|320668107|gb|EFX34986.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326338436|gb|EGD62264.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1044]
 gi|326347041|gb|EGD70774.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1125]
          Length = 240

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN]
 gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
 gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae]
 gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 21/200 (10%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R+L  +GY     +DGV           E L+  AR+   A+   ++      LE+ R +
Sbjct: 18  RSLSFNGYSVELANDGV-----------EALEMVARDRPDALVLDVMMPRLDGLEVCRQL 66

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K  ++ A
Sbjct: 67  RSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK-PDDAA 125

Query: 127 ETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E+  +  FSD     V  EV        L R E  +LE L+AN  + + +++I   ++G 
Sbjct: 126 ESVAMS-FSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEEVWG- 183

Query: 181 FDEAVEENVVESHISKLRKK 200
           FD     N +E ++  LR+K
Sbjct: 184 FDFPTSGNALEVYVGYLRRK 203


>gi|322807733|emb|CBZ05308.1| putative response regulator ArlR [Clostridium botulinum H04402 065]
          Length = 227

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP+I ++    +   +   D G +D + KP    E+LAR+    R   
Sbjct: 63  IEVCRRIRQFSCVPIIMLTTKSGVSDKVLGLDVGANDYLTKPFAIEELLARIRVYGREKL 122

Query: 121 VSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V +   E     +  D +  +V   G    L ++E  +LE L+ N+   + + ++   ++
Sbjct: 123 VKSKFDEVKVKEIVMDNKTHQVWRSGREIELTKKEYDLLEKLLINKNIVLTRERLIEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   + NVV+  I  LR K+ N      + + R +GY I
Sbjct: 183 G-YDYVGDTNVVDVFIRYLRSKIDNDSKEKLITTIRGVGYVI 223


>gi|300724027|ref|YP_003713342.1| transcriptional regulatory protein tctD [Xenorhabdus nematophila
           ATCC 19061]
 gi|297630559|emb|CBJ91224.1| Transcriptional regulatory protein tctD [Xenorhabdus nematophila
           ATCC 19061]
          Length = 221

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R+ +    +P++ ++    +   +   +SG DD + KP   +E+ AR+ A+ RR   +
Sbjct: 63  LLRLRKRGQNLPVLLLTAKSGVTDRVKGLNSGADDYLTKPFDFQELEARIRALLRRGSGI 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    + G + V+ D     +      L  RE  +L  L   RG+ V+K Q+F  ++ L 
Sbjct: 123 SQENLKFGSL-VYEDDGYFLLNNVPLALTPRELSVLTTLFLRRGRPVSKQQLFEQVFSLS 181

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           D+A  ++ +E ++ +LRKKL N  +G   + + R LGY ++
Sbjct: 182 DDANPQS-IELYVHRLRKKLLNSDVG---IGTLRGLGYRLE 218


>gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 246

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 16/163 (9%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           +++P++ ++    ++  +     G DD + KP    E++AR+ A+ RR   S+  A    
Sbjct: 79  AELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRRTHPSDADAAVLT 138

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +  +  D    G++  L   E ++L YL+ N  + V+K QI   ++  ++   E 
Sbjct: 139 YGDLELNEETYDVRRAGQIVELSPTEFKLLRYLLINAERVVSKMQILDHVWD-YNWNGEV 197

Query: 188 NVVESHISKLRKKLRN--KLGF-DP---------VDSKRFLGY 218
           ++VES+IS LR+K+ +   LG  DP         + +KR +GY
Sbjct: 198 SIVESYISYLRRKIDSAEALGITDPEEAKAIVPLIHTKRGIGY 240


>gi|255531237|ref|YP_003091609.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255344221|gb|ACU03547.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 224

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           ++  ++ +S   SL   L+  D G DD + KP    E+ AR+ A+YRR      +   G 
Sbjct: 71  AETGIVILSARNSLSDKLEGLDLGADDYLTKPFFLEELSARINALYRR------KTLRGT 124

Query: 131 IRVFSDGRDPE-------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFD 182
           + +  D    E         GE   L ++E  +L Y + N+ + ++K  I   ++G  FD
Sbjct: 125 VEILFDDFTIEPLAKLFFYLGEPVSLTKKEFEMLVYFVVNKNRVLSKASISEHLWGDHFD 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + V  + +  H++ LRKKL    G   + +   +GY
Sbjct: 185 QHVNFDTLYMHLTNLRKKLTRLSGKHYIKTVYGIGY 220


>gi|148260824|ref|YP_001234951.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326404218|ref|YP_004284300.1| cell cycle response regulator CtrA [Acidiphilium multivorum AIU301]
 gi|146402505|gb|ABQ31032.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325051080|dbj|BAJ81418.1| cell cycle response regulator CtrA [Acidiphilium multivorum AIU301]
          Length = 250

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL R +R A  + P++ ++   S  T L   ++GVDD++   I H EI  RV    RR 
Sbjct: 60  IELIRRLRLAGLRCPIMAVAHLLSEATRLRILEAGVDDLIVSAISHEEIFLRVQNQVRRS 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   ++    G + +  + +   V      L ++E +I+E L   +G  ++K  I   +Y
Sbjct: 120 RGFQSSSLAVGNVEINMNAKKIFVSQTEIGLTKKEYQIVEILALRKGCVLSKEAILDHLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  DE     +++  I K+RKKL      D + +    GY I
Sbjct: 180 GGLDEP-NPKIIDVFICKIRKKLLAAGADDLIQTNWGRGYMI 220


>gi|119776666|ref|YP_929406.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119769166|gb|ABM01737.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 80/153 (52%), Gaps = 7/153 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETG 129
           Q P++ +S   ++   +    SG DD + KP    E+L R   +  R + +      + G
Sbjct: 72  QTPVLILSALSNVDERVKGLRSGGDDYMTKPFAFSELLVRAEILVSRGQTAPVQTHLQAG 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
           P+ +    R+  + G    L  +E ++L+YLM +  + +++T +F A++   FD     N
Sbjct: 132 PLEMELLTRNVTLDGHELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVWDYHFDPRT--N 189

Query: 189 VVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           V++ HI+KLR+K   +LG+ + +++ R  GY +
Sbjct: 190 VIDVHIAKLRRKF-EELGYGELIETVRGAGYRL 221


>gi|328477647|gb|EGF47686.1| two-component response regulator [Lactobacillus rhamnosus MTCC
           5462]
          Length = 194

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 11/153 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 38  LEVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTS 97

Query: 121 VSN---------NRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +N         NR  E G + +  D      +GE   L  RE  +L YL  + G+ + +
Sbjct: 98  SANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTR 157

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 158 EHLLQTVWG-YDYFGDVRTVDVTVRRLREKIED 189


>gi|304412429|ref|ZP_07394036.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307305772|ref|ZP_07585518.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|304349264|gb|EFM13675.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911265|gb|EFN41691.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
          Length = 229

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 85/168 (50%), Gaps = 14/168 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           + L + IR H +VP++ ++     +  +   ++G +D ++KP   RE++AR+  + R L 
Sbjct: 62  ISLLQTIRQHDKVPVLILTARDQEEEKIRLLEAGANDYLSKPFGIRELIARIKVLVRDLV 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++  + G +++        +  +   L ++E  ++E LM++ G+ V +T++   I
Sbjct: 122 DEPALSDVLQFGALKLQKSTHQLWLDQQEIALTKKEFALIETLMSHPGQLVKQTELLRDI 181

Query: 178 YGLFDEAVEENVVESH-----ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G      E +  +SH     IS+LRKKL +      + ++  LGY +
Sbjct: 182 WG------ETHTDDSHYLRILISQLRKKLNDSTEQQLIKTEAGLGYRL 223


>gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 268

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 13/172 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R  RA ++  P+I  S   S    +   + G DD + KP    E++AR
Sbjct: 76  LMLPGVDGLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVAR 135

Query: 112 VAAIYRRLK--VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164
           V A+ RR+     ++R E G +R+     DP        G+   L  RE  +L Y   + 
Sbjct: 136 VKALLRRVDALAKDSRIEAGSLRLAGLSIDPLTREAAADGKPIELTPREFDLLYYFAQHP 195

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           GK  ++  + +A++G   E   E+ V +HI++LR K+      DP   +R L
Sbjct: 196 GKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAQPERIL 242


>gi|300771171|ref|ZP_07081047.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761841|gb|EFK58661.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 223

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 4/139 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-R 125
           +R   Q   I IS   S+   +   D G DD + KP H  E+ AR+ A+ RR +++ N  
Sbjct: 66  LRGKEQQHTIIISARDSIDDKIRGLDLGADDYLTKPFHLSELNARIKAVLRRKQLAGNPV 125

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            +   +++  D R   V  +     R+E  +  + + N+ K V KT +   ++G  D  +
Sbjct: 126 VQLNNLQINYDTRSICVNDQDLHFSRKEFDVFSFFVLNKNKLVTKTALAEHVWG-DDSDM 184

Query: 186 EENV--VESHISKLRKKLR 202
            +N+  + S I  +RKKL+
Sbjct: 185 ADNLDFIYSQIKNIRKKLK 203


>gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 228

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 78/143 (54%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR +  +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     +
Sbjct: 68  IRENRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSI 127

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N++  E G + V +D     V+G+   L  +E  ILE L+ N+G  ++  +I+ A++ 
Sbjct: 128 EHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLVRNKGIVLSVAKIYEAVWK 187

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208


>gi|190891005|ref|YP_001977547.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696284|gb|ACE90369.1| two-component response regulator protein [Rhizobium etli CIAT 652]
          Length = 251

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 5/156 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           R     P++ +S    +   +    +G DD + KP    E+LARV  + RR         
Sbjct: 94  RKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDVV 153

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
              G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++   FD  
Sbjct: 154 YRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 212

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + NV++ H+S+LR K+        + + R  GY I
Sbjct: 213 -QTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 247


>gi|73537882|ref|YP_298249.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
 gi|72121219|gb|AAZ63405.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
          Length = 231

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 8/154 (5%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127
           AH  VP++ ++   S    ++  D+G DD + KP    E+ AR+ A+ RR   +      
Sbjct: 76  AHVNVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELQARIRALIRRAHGMPAPELS 135

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            G +++        V G    L   E ++L+YLM + G  V+K+ +   IY   FD   +
Sbjct: 136 CGSVQLNPRAGTVTVDGAAVVLTAHEFKVLDYLMHHPGAIVSKSTLTEHIYAQDFDR--D 193

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N +E  + +LR+    KLG D +++ R  GY +
Sbjct: 194 SNTIEVFVGRLRR----KLGVDVIETVRGQGYRL 223


>gi|313497996|gb|ADR59362.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 231

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 14/164 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G++VL   R +R  S VP++ +S   S    +D  D G +D V KP   +E LARV A+ 
Sbjct: 63  GQQVL---RELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119

Query: 117 RRLKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R++  +      A  GP+ V    R   ++G    L R+E  +L  L  + G+ + + Q+
Sbjct: 120 RQVPQAGGSEVAASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVITQQQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
              I+G        +  ++H  ++    LR KLG DP  + RF+
Sbjct: 180 LKDIWG------PTHAEDTHYLRIVVGHLRQKLGDDPT-APRFI 216


>gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
 gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
          Length = 233

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  S  P+I ++     +  +   +SG DD + KP   +E+LAR+ A+ RR     +  
Sbjct: 68  IREESATPVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVMRRTGQEEEQE 127

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N +     + +  D  +  V G+    P +E  +L +L +   +   + Q+   ++G FD
Sbjct: 128 NKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLASAPNRVFTRNQLLDEVWG-FD 186

Query: 183 EAVEENVVESHISKLRKKL 201
              +   V+ HI +LR+KL
Sbjct: 187 YFGDSRTVDVHIKRLREKL 205


>gi|255654863|ref|ZP_05400272.1| two-component response regulator [Clostridium difficile QCD-23m63]
          Length = 230

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 17/177 (9%)

Query: 42  AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           +++D   +   ++  G    E    IR +S +P++ ++      + +    +G DD + K
Sbjct: 42  SKQDYQLVVLDVMMPGMDGFETMEQIRKYSSIPILMLTSKNDNYSKVHGLRAGADDYLTK 101

Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERR 155
           P    E  ARV ++ RR    N + E      F       D       GE   LP +E  
Sbjct: 102 PFEIAEFTARVLSLIRRYTRFNPKNEESQQLSFKGLLIDLDQHTVTTNGETMLLPPKEFG 161

Query: 156 ILEYLMANRGKRVAKTQIFSAIYG---LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +L Y   ++GK + K QI+ A++G   ++D        +S+I  +  +LR K+  DP
Sbjct: 162 VLLYCARHQGKILTKQQIYEAVWGEPYVYD--------DSNIMAIISRLRKKIELDP 210


>gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 226

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 16/139 (11%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVS 122
            Q P++ I+   ++   +   D+G DD + KP   +E+ ARV A+ RR        L+  
Sbjct: 71  CQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRRGNPSLPPVLEWG 130

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N R +    RV+        Q E  PL  +E ++LE+ + +  +  +++Q+   ++  F+
Sbjct: 131 NIRLDPSSCRVY-------YQHEEIPLSPKEYKLLEFFLRHERRVFSRSQLLEHLWP-FE 182

Query: 183 EAVEENVVESHISKLRKKL 201
              EE  V++HI  LR+KL
Sbjct: 183 RLPEEATVKAHIRSLRQKL 201


>gi|167839126|ref|ZP_02465903.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 220

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R    +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLIKPFALEELLARIRAVNRR---Q 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             RA+T    G +R+           E   L  +E  +L  LM   G  +++ Q    +Y
Sbjct: 120 AGRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + E +E N V+ HI  LRK    KLG D + + R +GY I
Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216


>gi|170738040|ref|YP_001779300.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820228|gb|ACA94810.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 224

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 10/154 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
            P++ +S    +   ++   +G DD + KP    E+ AR+  + RR +    R ET    
Sbjct: 74  TPVLVMSAMSGVDQRIEGLRAGGDDYLVKPFSLEEMCARIDVLIRR-RPRGARVETVLRA 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187
           G + +    R   +      L   E R+LE++M N G+ + +T IF A++G  FD     
Sbjct: 133 GELALDLVRRRATLGARELTLLPTESRVLEFMMRNAGRVLTRTMIFEAVWGCRFDPGT-- 190

Query: 188 NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           N+++ HI +LRKK+ N+ G  P + + R  GY +
Sbjct: 191 NLIDVHIGRLRKKV-NRPGAAPLIRTIRGSGYML 223


>gi|31873070|gb|AAP60033.1| NisR [Cloning vector pMSP3535]
 gi|34558748|gb|AAQ75105.1| NisR [Shuttle vector pMSP3535-FT]
 gi|34558755|gb|AAQ75111.1| NisR [Shuttle vector pMSP3535-RT]
 gi|222478239|gb|ACM62696.1| NisR [Shuttle vector pMSP3535H3]
          Length = 212

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 12/170 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR     P+I +S   + +  ++    G DD + KP   ++++A+V A  +R + 
Sbjct: 46  EICKRIRREISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 105

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S  R + GPI  + + R   V G+  PL  RE  ILE L     K   +  I
Sbjct: 106 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 165

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  +Y  +  A+  ++ E +I ++R K       +P+ + R LGY   W+
Sbjct: 166 YDDVYDEYSNALFRSISE-YIYQIRSKF-APYDINPIKTVRGLGYQ--WH 211


>gi|327439249|dbj|BAK15614.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 236

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 10/117 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAET-------GPIRVFSDGRDPEVQG 144
           G DD + KP   RE++ARV A+ RR    V     E+       G ++VF +  +  +  
Sbjct: 96  GADDYMTKPFSPREVIARVKAVLRRFSGPVVEETVESSEVVYTFGNLKVFPERFEAFIDD 155

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           E      +E  +L YL+ N+ + + + Q+ SA++  +D A +  +V+ HIS LR K+
Sbjct: 156 ESLEFTPKEFELLVYLLENKNRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKI 211


>gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321]
 gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321]
          Length = 235

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 119 -LKVSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            + V N  +        + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LVSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213


>gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
 gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
          Length = 235

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 119 -LKVSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            + V N  +        + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LVSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213


>gi|294788403|ref|ZP_06753646.1| DNA-binding response regulator CpxR [Simonsiella muelleri ATCC
           29453]
 gi|294483834|gb|EFG31518.1| DNA-binding response regulator CpxR [Simonsiella muelleri ATCC
           29453]
          Length = 228

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 25/198 (12%)

Query: 34  FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS 93
            +E L S    DV  +++ +   G   L++ + +RA S++P+I ++        +   + 
Sbjct: 38  VKEILHSGNSYDVVILDSMMPKMGG--LDVLKTVRAQSKIPIIMLTAKGDDIDRIIGLEM 95

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN-------NRAETGPIRVFSDGRDPEVQGEV 146
           G DD V KP   RE+LAR+ AI RR + +N       N      + ++   R   +    
Sbjct: 96  GADDYVPKPCQPRELLARINAILRRAQHNNGDSNNAANSLSVSNVTLYPAKRQASIGDTP 155

Query: 147 FPLPRRERRILEYLMANRGKRVAK-TQIFSAI---YGLFDEAVEENVVESHISKLRKKLR 202
             L   E  +LE LM + G+ V+K T    A+      FD +     ++ HIS +R KL 
Sbjct: 156 LELTSTEFNLLEALMRHAGQVVSKETLSLEALDRKLAKFDRS-----IDVHISSIRHKL- 209

Query: 203 NKLGFDP--VDSKRFLGY 218
                DP  + + R LGY
Sbjct: 210 ----GDPSLIQTVRGLGY 223


>gi|196247939|ref|ZP_03146641.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|196212723|gb|EDY07480.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 80/161 (49%), Gaps = 2/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F  G DD + KP    E++ARV A+ +R ++
Sbjct: 62  ELCRELRDYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++  + G + +     +  +     PLP +E  +L  L +  GK   + ++   I+G 
Sbjct: 122 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 181 YDYEGDERTVDVHIKRLRERFAQPNAPFFIRTIRGLGYRLE 221


>gi|109453374|gb|ABG34167.1| PhoP [Salmonella bongori]
          Length = 213

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG D+ V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADEYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
             E  E + ++  + +LRKK++ +   D + +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITT 212


>gi|153811126|ref|ZP_01963794.1| hypothetical protein RUMOBE_01517 [Ruminococcus obeum ATCC 29174]
 gi|149832624|gb|EDM87708.1| hypothetical protein RUMOBE_01517 [Ruminococcus obeum ATCC 29174]
          Length = 230

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------L 119
           IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR        
Sbjct: 67  IREKNALPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQLGAMT 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N  ETG + +  D ++  V GE   L   E RIL +L+ N+G+  +  QI+  I+ 
Sbjct: 127 EKKENIYETGGLMIDDDRKEVTVDGESVKLTPIEYRILLFLVQNQGRVFSINQIYENIWN 186

Query: 180 LFDEAV-EENVVESHISKLRKKL 201
             +EA+  +N V  HI  +R+K+
Sbjct: 187 --EEAIAADNTVAVHIRHIREKI 207


>gi|332187583|ref|ZP_08389319.1| response regulator [Sphingomonas sp. S17]
 gi|332012331|gb|EGI54400.1| response regulator [Sphingomonas sp. S17]
          Length = 229

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P++ +S   S +  +    SG DD + KP    E+LARV  + RR  V+ N  +T   ++
Sbjct: 76  PVLILSALSSPEDRVAGLTSGSDDYLTKPFVFAELLARVRLLIRRGSVTTNAPQT---KL 132

Query: 134 FSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             D  + ++        G+   L  RE R+LEYL+ +  + V +T +   ++   FD   
Sbjct: 133 VCDDLEMDLLAHRVRRAGKPIDLQPREYRLLEYLLQHVDQVVTRTMLLEGVWDFHFDP-- 190

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             NV + HIS+LRKK+        + + R  GY +
Sbjct: 191 NTNVTDVHISRLRKKIDEGFARPLLHTVRGSGYKL 225


>gi|325676168|ref|ZP_08155849.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325553078|gb|EGD22759.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 244

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII----RAHSQVPLIGI 78
           G+ L GF  L   +   +      +A +A ++     VL+   ++    RA ++VP+  +
Sbjct: 34  GLRLSGFTVLTASDGAVALRVVADAAPDAVVLDMNMPVLDGTGVVTALRRAGNEVPICVL 93

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIR 132
           S   S+   +   +SG DD + KP    E++AR+ A+ RR  V+    +T      GP+ 
Sbjct: 94  SARSSVDDRIAGLESGADDYLVKPFVLAELVARIRAMLRRRSVAVAATDTDPPIVVGPLS 153

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   +      L +RE  + E L  N G  +++ ++   ++G +D   + NVV+ 
Sbjct: 154 VDLAGRRVWLGDTEIALTKREFELTEVLARNAGVVLSRERLLDLVWG-YDFVADTNVVDV 212

Query: 193 HISKLRKK 200
            +  LR+K
Sbjct: 213 FVGYLRRK 220


>gi|323525961|ref|YP_004228114.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323382963|gb|ADX55054.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 224

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 23/228 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--------AREDVSAIEAFL 53
            +L++D  L+ DG  A     G+  +GF      +W+Q          A+   +A+    
Sbjct: 3   ILLVEDDPLLGDGIRA-----GLRQQGFQV----DWVQDGEAAQRELRAQPYAAAVLDLG 53

Query: 54  IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           + + + +  L  + R     P++ ++   ++   +   D G DD V KP+   E+ AR+ 
Sbjct: 54  LPRMDGIDVLRSVRRVGVDFPILVLTARDAVPDRVRGLDMGADDYVVKPVDLEELGARLR 113

Query: 114 AIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR       R E   + +    R     G    L  RE  +L  LM N G+ +++ Q
Sbjct: 114 ALVRRAHGRPRERLEAHDVVLDPASRMVYRAGVPVTLSSREFDLLHVLMLNAGRVLSREQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   +Y  + + VE N VE H+     +LR+KLG D + + R +GY +
Sbjct: 174 IEQHLYS-WGQEVESNAVEVHV----HRLRSKLGSDVIRTVRGIGYVL 216


>gi|260777964|ref|ZP_05886857.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605977|gb|EEX32262.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 216

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 105/229 (45%), Gaps = 29/229 (12%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------G 55
            +LI+D  L+  G ++LF  +G             W+Q + + +    +A L+       
Sbjct: 4   LLLIEDDKLLGQGLVSLFESNGYHCV---------WVQETRKVEQLWFKADLVILDRQLS 54

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G+ +  LP  +   + VP+I ++     +  ++   +G  D V KP  H E+LARV + 
Sbjct: 55  DGDSLKHLPHWLLLKA-VPVIILTAKIDTEQKVEGLMAGAKDYVTKPFSHDELLARVVSQ 113

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R L  S      G I +    R+     ++  L  +E ++L  L+ N+G+   + ++ +
Sbjct: 114 LRPLGAS--YLCYGGIELHLAKREAMFNDQLVTLKPKEFQLLVLLIQNQGRVFHRDELLN 171

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV---DSKRFLGYSID 221
            ++G +        +++HI +LR+KL       PV   ++ R +GY ++
Sbjct: 172 KVWG-YQAFPSTRTIDNHILRLRQKL-------PVLNIETHRGVGYRLN 212


>gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
 gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
          Length = 235

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 20/202 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  +   DG           EE L+    ED   I   L+      LE+ + +RA
Sbjct: 22  LEKEGYEVVVAFDG-----------EEALEKVEAEDPDLIILDLMLPKVDGLEVAKRVRA 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127
               P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +   AE  
Sbjct: 71  KHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRREATAQAPAEED 130

Query: 128 ------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G I +  +      +GE   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 131 KNTDIKVGDITIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHLLQTVWG-Y 189

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D   +   V+  + +LR+K+ +
Sbjct: 190 DYFGDVRTVDVTVRRLREKIED 211


>gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 235

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----------TGPIRVFSDGRDPEVQ 143
           G DD + KP   RE++AR+ AI RR +     AE           G + +F +  +    
Sbjct: 95  GADDYLTKPFSPREVVARIKAIMRRTESRKEAAEETESPTAELTIGDLHIFPESYEAYRG 154

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++  L  +E  +L +L  N+GK  ++ Q+  A++  +D   E  +V+ H+S LR+K+
Sbjct: 155 DQLLELTPKEFELLLFLATNKGKVFSRDQLLDAVWN-YDYIGETRIVDVHVSHLREKV 211


>gi|113868353|ref|YP_726842.1| response regulator [Ralstonia eutropha H16]
 gi|113527129|emb|CAJ93474.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 224

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 76/140 (54%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R+ +  + +P++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR    
Sbjct: 63  LRRLRQRRNPLPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSELEARARALIRRAHGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + +   GP+   S  R   + GE+ PL  RER +LE L+   G+ V K  +   I+G+ 
Sbjct: 123 ESTQIACGPLHYDSVSRAVLLHGELLPLTGRERAVLEVLLLRDGRAVNKAALSEKIFGI- 181

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE+V  + +E ++ +LRKKL
Sbjct: 182 DESVNPDAIEIYVHRLRKKL 201


>gi|332829361|gb|EGK02015.1| hypothetical protein HMPREF9455_00137 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 224

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 4/151 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G K+LE  +  +A      I IS   SL+  +   D G DD + KP H  E+ AR+ A
Sbjct: 57  GSGLKILEEMK--KAGITGNTIIISAKNSLEDKITGLDLGADDYLTKPFHLAELHARIKA 114

Query: 115 IYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR ++  +N  + G + V  D     +  +   L R+E  IL +   N  K + K  +
Sbjct: 115 VLRRKQLDGSNVLKLGNVSVDFDKHLVYIDDQELRLNRKEFDILSFFAMNTNKLITKEVL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
              ++G   D A   + V + I  LRKKL++
Sbjct: 175 AEHVWGDNIDSADNFDFVYAQIKNLRKKLKD 205


>gi|312891526|ref|ZP_07751040.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311295989|gb|EFQ73144.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 226

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 9/153 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + +RA +  +P++ ++   ++   +    +G DD + KP H  E+LAR+ A+ RR 
Sbjct: 61  IDVCKHVRATNPHIPILMLTALGAVDDKVAGLKAGADDYLVKPFHFIELLARIEALLRRQ 120

Query: 120 KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    AE      + + + G+     G+   L  +E  +LE  M N+GK + +  I   
Sbjct: 121 TMEKVDAEILKFDDLELDTSGKTATRAGKTIVLTAKEYALLELFMRNQGKILTRQYIAER 180

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
           ++G+ FD     N ++ ++S LR K+    GFD
Sbjct: 181 VWGIGFDTGT--NFIDVYMSFLRNKIEK--GFD 209


>gi|306842746|ref|ZP_07475388.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO2]
 gi|306287090|gb|EFM58595.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO2]
          Length = 181

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 20/175 (11%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R +R   +   +P+I ++        +     G DD V KP    E+LARV 
Sbjct: 13  GVSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVK 72

Query: 114 AIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           A+ RR         LKV +   +    RV+   ++ EV      L   E R+LEY M + 
Sbjct: 73  AMLRRANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSP 125

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G+  +++Q+   ++G  D  V++  V+ H+ +LRK +      DP+ + R  GYS
Sbjct: 126 GRVFSRSQLLDGVWGP-DIYVDDRTVDVHVGRLRKAINVGRAADPIRTVRGAGYS 179


>gi|296449610|ref|ZP_06891386.1| response regulator [Clostridium difficile NAP08]
 gi|296878070|ref|ZP_06902085.1| response regulator [Clostridium difficile NAP07]
 gi|296261546|gb|EFH08365.1| response regulator [Clostridium difficile NAP08]
 gi|296430823|gb|EFH16655.1| response regulator [Clostridium difficile NAP07]
          Length = 238

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 17/177 (9%)

Query: 42  AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           +++D   +   ++  G    E    IR +S +P++ ++      + +    +G DD + K
Sbjct: 50  SKQDYQLVVLDVMMPGMDGFETMEQIRKYSSIPILMLTSKNDNYSKVHGLRAGADDYLTK 109

Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERR 155
           P    E  ARV ++ RR    N + E      F       D       GE   LP +E  
Sbjct: 110 PFEIAEFTARVLSLIRRYTRFNPKNEESQQLSFKGLLIDLDQHTVTTNGETMLLPPKEFG 169

Query: 156 ILEYLMANRGKRVAKTQIFSAIYG---LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +L Y   ++GK + K QI+ A++G   ++D        +S+I  +  +LR K+  DP
Sbjct: 170 VLLYCARHQGKILTKQQIYEAVWGEPYVYD--------DSNIMAIISRLRKKIELDP 218


>gi|326792137|ref|YP_004309958.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326542901|gb|ADZ84760.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 224

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +R    Q P+I ++    +   +   D G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LEVLKQLREQKIQTPVILLTAKDEVSDRVKGLDHGADDYLTKPFATDELLARIRALGRRR 119

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + ++      I +     +     +   L  +E RILE+L+ +    V+K ++   I
Sbjct: 120 GELICDDTLHFEDISLNLSTYELSCGSKTVRLGLKEFRILEFLIRHGQHIVSKEELLEKI 179

Query: 178 YGLFDEAVEENVVESHISKLRKKL---RNKLGFDPVDSKRFLGYSI 220
           +G FD   E N VE +IS LRKKL    +K+G   V   R +GY +
Sbjct: 180 WG-FDSEAEYNHVEVYISFLRKKLSHIHSKVGIQTV---RGVGYRL 221


>gi|255524384|ref|ZP_05391341.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187507|ref|ZP_06855902.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511941|gb|EET88224.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048029|gb|EFG87468.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 226

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 6/183 (3%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE---LPRIIRAHSQVPLIGISDYPS 83
           EGFN L+ E    +      + +E  ++     V++     + IR  SQVP+I ++    
Sbjct: 25  EGFNVLQAENGKDALKIFKENTVELVVLDIMMPVMDGWTTCKEIRKISQVPVIMLTAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPE 141
            +  +  F+ G D+ V KP   + ++A+V A+ +R     N  +     + +     + +
Sbjct: 85  DEDQILGFELGTDNYVTKPFSPKLLVAKVKALLKRAYPDENNQDNFFDGLYINEKAHETK 144

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  E   L  +E  +L Y   N+G  +++ QI  +++G+ D   +   V++HI +LR+KL
Sbjct: 145 INDEDIYLSPKEFELLSYFAKNKGMVLSREQILDSVWGI-DYYGDLRTVDTHIKRLREKL 203

Query: 202 RNK 204
             K
Sbjct: 204 GEK 206


>gi|194017117|ref|ZP_03055729.1| response regulator [Bacillus pumilus ATCC 7061]
 gi|194010985|gb|EDW20555.1| response regulator [Bacillus pumilus ATCC 7061]
          Length = 258

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 19/148 (12%)

Query: 65  RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           R+IR HS VP+I +S  D+P+ +  ++     G DD V KP H   ++A+V+A+ RR  V
Sbjct: 94  RMIRHHSNVPIIFLSSRDHPADMVMSMQL---GADDFVQKPFHFDVLIAKVSAVLRR--V 148

Query: 122 SNNRAETGPIRVFSDGR-DPEV------QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  AE   ++V+     D E        GEV  L + E  IL+ L+ ++   V++  + 
Sbjct: 149 HDYNAEPASLKVWCGATIDLEKNTVTNDHGEV-ELTKNELFILKELIQHKNHIVSRESLI 207

Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKL 201
            A++   DE  V +N +  ++++LRKKL
Sbjct: 208 QALWE--DERFVSDNTLTVNVNRLRKKL 233


>gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
          Length = 235

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK----------VSNNRAETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LARV A+ RR K          +++N    G ++V+ +  +    
Sbjct: 96  GADDYLTKPFSPRELLARVKAVLRRTKGKQEGDDSDNIADNSWLFGTLKVYPERHEVYKA 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  L  +E  +L YLM +    + + ++   I+G +D   E  +V+ HI KLR+K+ +
Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214


>gi|92115368|ref|YP_575296.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91798458|gb|ABE60597.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 229

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++   A +++P+I ++        +   ++G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDTATAELPIILLTAKSEEDNKIQGLEAGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   +  +    P+ +     DP        G+   +   E R+L++ M ++ +  
Sbjct: 119 AVLRR---TTPKGVEDPVEIEGLLLDPVSHRVSANGQALDVGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRSQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|148546949|ref|YP_001267051.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148511007|gb|ABQ77867.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 231

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 14/164 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G++VL   R +R  S VP++ +S   S    +D  D G +D V KP   +E LARV A+ 
Sbjct: 63  GQQVL---RELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119

Query: 117 RRLKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R++  +      A  GP+ V    R   ++G    L R+E  +L  L  + G+ + + Q+
Sbjct: 120 RQVPQAGGSEVAASFGPLTVDFAFRRVTLEGLEVALTRKEYALLALLAGHPGRVITQQQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
              I+G        +  ++H  ++    LR KLG DP  + RF+
Sbjct: 180 LKDIWG------PTHAEDTHYLRIVVGHLRQKLGDDPT-APRFI 216


>gi|295108756|emb|CBL22709.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 222

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  SQVP+I IS        +     G DD + KP     + A++ AI RR        
Sbjct: 67  IRRISQVPIIFISSAADNMNMVMAMSRGADDFIAKPFDMDVLTAKIQAILRRTYSFGTPG 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E     +          G    L + E RILE L+ + GK V++  + + ++   D 
Sbjct: 127 NVLEYKGALLNPPRCTLTWNGHDIALTKNELRILEILLEHAGKTVSRDALMTRLWE-SDS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V++N +  +I++LR+KL  +   D + +K+ LGY +
Sbjct: 186 FVDDNTLTVNITRLRRKLEGEGLKDFIITKKGLGYMV 222


>gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 228

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++        +   + G DD V KP +  E+ AR+ AI RR   
Sbjct: 62  EVCQAIREFSTVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAILRRSVS 121

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               AET  +      ++  D R   + G+   L  +E  +LE L+ +  K  ++  + +
Sbjct: 122 HAAPAETPKVIESRGLKIDCDSRRVHINGKEVNLTAKEFDLLELLVFHPNKVYSREDLLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            ++G +D   +   V+ HI +LR+K+    G  D V +K  +GY
Sbjct: 182 TVWG-YDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGY 224


>gi|126463915|ref|YP_001045028.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221369515|ref|YP_002520611.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides KD131]
 gi|332561170|ref|ZP_08415488.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides WS8N]
 gi|126105726|gb|ABN78256.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|221162567|gb|ACM03538.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides KD131]
 gi|332274968|gb|EGJ20284.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides WS8N]
          Length = 220

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 14/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+ DD  + +D  +AL G  G  +E     E   +L  +   D+  ++  L  K + + 
Sbjct: 4   LVVEDDARIAQDLSVAL-GSAGFRVETAADGETAWFLGGTESYDLIVLDLGLP-KLDGLA 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R      ++P++ ++   +    ++  D+G DD + KP    E++AR  A+ RR   
Sbjct: 62  VLKRWRAEGVEIPVLVLTARGTWTERVEGIDAGADDYLPKPFRIEELVARARALVRR--- 118

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  RA      G + +  +     + G    L   E R+L YLM +R + V  T++   +
Sbjct: 119 STGRAAPLQSVGRLALDMNRMTATLDGLPLGLAPLEFRLLAYLMLHRDRVVPPTELLEHL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           YG  ++A E N +E+ +++LR+    K+G   + ++R  GY ++
Sbjct: 179 YG-DNDAREANALEAVVARLRR----KVGRGVIGTRRGFGYQLE 217


>gi|15597853|ref|NP_251347.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107102178|ref|ZP_01366096.1| hypothetical protein PaerPA_01003228 [Pseudomonas aeruginosa PACS2]
 gi|116050644|ref|YP_790537.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218891181|ref|YP_002440047.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254235639|ref|ZP_04928962.1| hypothetical protein PACG_01571 [Pseudomonas aeruginosa C3719]
 gi|254241086|ref|ZP_04934408.1| hypothetical protein PA2G_01771 [Pseudomonas aeruginosa 2192]
 gi|296388882|ref|ZP_06878357.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313107697|ref|ZP_07793879.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9948727|gb|AAG06045.1|AE004694_8 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115585865|gb|ABJ11880.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167570|gb|EAZ53081.1| hypothetical protein PACG_01571 [Pseudomonas aeruginosa C3719]
 gi|126194464|gb|EAZ58527.1| hypothetical protein PA2G_01771 [Pseudomonas aeruginosa 2192]
 gi|218771406|emb|CAW27173.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310880381|gb|EFQ38975.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 223

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 7/148 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130
            P++ ++   S    +D   +G DD + KP H  E+  R+ A+ RR     N++  E   
Sbjct: 73  TPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQSQLEAAG 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +R+    +   + G    L   E R+L Y M + G+ ++K  +   +Y    E  + NV+
Sbjct: 133 LRLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLYDGETER-DSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E H++ LR+    KLG + ++++R  GY
Sbjct: 192 EVHVNHLRR----KLGREVIETRRGQGY 215


>gi|330816594|ref|YP_004360299.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327368987|gb|AEA60343.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 221

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 87/161 (54%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R+  + S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR    
Sbjct: 63  LRRLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGL 180
           +++    G + +    R  E+ G+  PL R+E  +LE ++A+R +RV +K ++ + ++  
Sbjct: 123 ASDVLRFGALSIDRSSRLAELDGQPLPLSRQEFALLE-ILASRPQRVFSKDELLNQLFS- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           F      N VE +++++R+KL+   G D  + + R +GY I
Sbjct: 181 FGREPSANAVEQYVTRVRRKLQ---GSDVEIRTARGMGYQI 218


>gi|307547006|ref|YP_003899485.1| phosphate regulon transcriptional regulator PhoB [Halomonas
           elongata DSM 2581]
 gi|307219030|emb|CBV44300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Halomonas elongata DSM 2581]
          Length = 229

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++     +++P+I ++        +   D+G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKREETTAEMPIIMLTAKSEEDNKIQGLDAGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   S       P+ V     DP      V G    +   E R+L++ M ++ +  
Sbjct: 119 AVLRR---STPHGVEDPVEVDGLLLDPVSHRVSVDGNSLEVGPTEYRLLQFFMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 245

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 8/163 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R    +P++ ++   +++  +    +G DD V KP    E++AR+  + RR   +
Sbjct: 82  LGRLRRELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGAA 141

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             R+E+    G + +  D  +    G    L   E  +L YLM N  + ++K QI   ++
Sbjct: 142 AARSESVLAVGDLILDEDSHEVSRGGREIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 201

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +D   + NVVE +IS LR+K+    G  P + ++R  GY I
Sbjct: 202 S-YDFGGQANVVELYISYLRRKI--DAGRSPMIHTRRGAGYLI 241


>gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 231

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 87/167 (52%), Gaps = 10/167 (5%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE  +++RA+ + VP++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 63  LETTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRALTRRS 122

Query: 120 KVSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  + +A    +  F+D   DP+ +     G    L R E  +L+  M + GK + ++ +
Sbjct: 123 RPESQQA--NEVLSFADMTLDPQTREVTRGGRRISLTRTEFALLQTFMEHPGKVLDRSWL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G FD     N +E +I  LR+K   +     + + R +GY +
Sbjct: 181 LNEVWG-FDFPATANSLEVYIGYLRRKTEQEGEPRLIHTVRGVGYVL 226


>gi|168334739|ref|ZP_02692871.1| DNA-binding response regulator [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 228

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           F     EE L+    E +  +   L+  G +  E+ + +R  S V +  IS   +L   +
Sbjct: 28  FTCYSGEEGLKVFLDEKIDVVLLDLMLPGMQGEEICKKMREISNVYIFMISAKGTLDNKV 87

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQG 144
             F+ G D+ + KPI  REI+ARV A+  R +  NN      + G ++++ + R     G
Sbjct: 88  GGFNLGADEYLVKPISPREIVARVNALKTRKERENNEELCIFDKGNLKIYPETRMVISYG 147

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   L   E  IL +L  + G+   + Q+  A+ G+ D    +  ++ HI  +RKK+
Sbjct: 148 KDIVLTPNEFDILYHLAKSPGRVFXREQLIDAVMGI-DXDGFDRTIDVHIKNIRKKI 203


>gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 242

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 8/142 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+ R+   VP + ++   + +  +     G DD V KP    E++ARV AI RR   ++ 
Sbjct: 82  RLRRSGQGVPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRRAGAADG 141

Query: 125 RAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            A T P+R      DPE +     G    L   E R+L YL+AN  K + + Q+   ++G
Sbjct: 142 -APT-PLRFADLELDPETREVRRAGRHVDLTATEYRLLHYLLANARKVLTRAQLLDHVWG 199

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             D   +  V+E+++S LR+K+
Sbjct: 200 -HDFGGDARVLETYVSYLRRKI 220


>gi|330503679|ref|YP_004380548.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328917965|gb|AEB58796.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 222

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L++D   + D   A     G +++         +  +S   D+  ++  L GK G +V
Sbjct: 3   LLLVEDHVPLADELTASLARQGYAVDWLADGRDAAYQGASEPYDLIILDLGLPGKPGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R        P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 63  LQEWRA--GGLATPVLVLTARGSWAERIEGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E   +++    +     GE   L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPQLEAAGLQLDESRQCVTSGGEAIDLTAAEFRLLRYFMLHPGQILSKSHLADHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               E  + NV+E H++    +LR KLG + ++++R  GY
Sbjct: 181 DGETER-DSNVIEVHVN----RLRGKLGRNVIETRRGQGY 215


>gi|329888201|ref|ZP_08266799.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC
           11568]
 gi|328846757|gb|EGF96319.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC
           11568]
          Length = 223

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 9/161 (5%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           I +   Q P++ +S    ++  +    +G DD + KP    E++ARV A+ RR +    +
Sbjct: 66  IRKGGDQTPVLFLSALGEVEDRVTGLKAGGDDYLVKPYALAELVARVEALSRRRETGGVQ 125

Query: 126 A--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
              + G + +    R     G+   L  RE ++LE+LM + G+ V +T +   ++   FD
Sbjct: 126 TVLKVGDLEMNLIARTVHRDGQEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVWEYHFD 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
              + NV++ HIS+LR K+    GFD   + + R  GY ++
Sbjct: 186 P--QTNVIDVHISRLRSKIDK--GFDKAMLQTVRGAGYRLE 222


>gi|325521874|gb|EGD00591.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 221

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 14/173 (8%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  L++   IRA  + VP++ ++   +L   L   D G DD V KP    E+LAR+ A+
Sbjct: 56  GKDGLDVLTSIRATGNTVPVVVVTARDALDDRLRGLDGGADDYVLKPFEMVELLARLRAV 115

Query: 116 YRRLKVSNNRAE----TGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAK 170
            RR    N  A      G + +    R+  V  G +  L  RE  +L  L+   G  +++
Sbjct: 116 LRR---KNGGAAPTLGNGVVSLDPATREASVHGGPLLQLTNREFALLRALLTRPGAILSR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +   IYG + E VE N VE  I  LR+    KLG + + + R +G+ +  N
Sbjct: 173 NDLEDRIYG-WGEEVESNAVEYLIHSLRR----KLGGEIIRNVRGVGWMVSKN 220


>gi|310828178|ref|YP_003960535.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739912|gb|ADO37572.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 219

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 9/188 (4%)

Query: 38  LQSSAREDVSAIEAF------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91
           L   A   ++ +EAF      ++  G     L R IR +   P++ ++     +  +   
Sbjct: 31  LSDPAALSMNGLEAFDLILLDVMMPGTDGFTLCRKIRENVDCPILFLTAKTMEKDIMYGL 90

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLP 150
             G DD + KP  + E+ ARVAA  RR K       +     F+ G    + GE    L 
Sbjct: 91  GIGGDDYITKPFGNGELRARVAAHLRREKREKRSVLSLDGIRFNLGAHEMIIGEQKVSLT 150

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           + E  I E+L  + G+  +K QI+ A+YG   E  + + +  H+  +R KL +  G  P+
Sbjct: 151 KSEYAICEFLARSHGQVFSKEQIYEAVYGYEGEG-DSSAIAEHVKNIRAKL-SVYGCAPI 208

Query: 211 DSKRFLGY 218
           ++   +GY
Sbjct: 209 ETVWGIGY 216


>gi|295106245|emb|CBL03788.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 230

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 2/157 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           R     P++ ++   ++   +   DSG DD + KP    E+LA + A+ RR  +V   + 
Sbjct: 68  RTGVSTPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQGEVLFEKL 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +  +  D     +   L  +E  + + L+AN G  V+K  I   ++G+ +   E
Sbjct: 128 SAGDLELNLESHDLSCGAKSIHLSYKEFCLAKVLIANAGAVVSKDLIIEKVWGV-ESTAE 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +N VE+++S LRKK++       +++ R  GY    N
Sbjct: 187 DNNVEAYVSFLRKKMKFLGSSARIETLRRAGYRFSVN 223


>gi|227545314|ref|ZP_03975363.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908609|ref|ZP_07126072.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
 gi|227184710|gb|EEI64781.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894016|gb|EFK87374.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
          Length = 239

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R HSQVP+I IS        +    +G DD + KP     +LA++ A+ RR K + +  
Sbjct: 80  VRKHSQVPIIVISAAEIDTNVMHAVAAGADDYIMKPFAMTVLLAKIQALLRRNKQTTDAE 139

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E         P+       +   Q     L   E  +L+ L+++R K V+K Q+   ++ 
Sbjct: 140 EIMWDHNSFNPLTNILMNENGTAQ-----LTPTEGAMLQVLLSHRNKTVSKEQLLQWLWQ 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              + + EN +  +IS+LR KL        + ++R LGY
Sbjct: 195 -GGKYLNENTLNVNISRLRTKLSTIGLRQCIHTERGLGY 232


>gi|119962132|ref|YP_946602.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119948991|gb|ABM07902.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 246

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 7/163 (4%)

Query: 43  REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           R DV  ++  L G  G +VL   RI     +VP + ++   ++Q  +    +G DD V K
Sbjct: 65  RPDVLVLDVMLPGFDGVEVLN--RIRTFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTK 122

Query: 102 PIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           P    E+L R+  + +R  V+  + AE   G + +  D R+    GE   L   +  +L 
Sbjct: 123 PFSMEEVLLRLHRLVQRSGVAAMDTAELVVGDLTLNVDTREVTRGGEDISLTATQFELLR 182

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           YLM N  + V+K QI   ++  +D   + N+VE +IS LRKK+
Sbjct: 183 YLMENPKRVVSKAQILDRVWD-YDFGGQANIVELYISYLRKKI 224


>gi|91774844|ref|YP_544600.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91708831|gb|ABE48759.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 228

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           +P+I ++        +   + G DD V KP   RE+ AR+ A+ RR   +++++  E G 
Sbjct: 77  IPIIMLTARGEEADKVRGLEVGADDYVTKPFSPRELNARIKAVLRRRAPQMTDDPLEIGG 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEEN 188
           +R+          G+   L   E R+L YLM+N  +  ++TQ+   ++G  +F   VE+ 
Sbjct: 137 LRLDPMTHRVSGNGKTLELGPTEFRLLHYLMSNPERVHSRTQVLDRVWGDRVF---VEDR 193

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            V+ HI +LR+ L      + + + R +GY
Sbjct: 194 TVDVHIRRLRRALSESGHEEFIQTVRGVGY 223


>gi|56965315|ref|YP_177047.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911559|dbj|BAD66086.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 224

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 80/155 (51%), Gaps = 11/155 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R  + VP++ ++   S+   ++  + G DD +NKP  H ++LAR+    RR K
Sbjct: 61  LDVCRSVREFTDVPILFVTARTSMNDQINGLNIGGDDYINKPFTHEQLLARIKTHLRREK 120

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQ-GEV-FPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +    G I++  D R  E++ GE    L  +E +I+E LM+N  +  +K  ++ 
Sbjct: 121 RKQQPTDELVYGKIKL--DRRTNELRYGETPLLLTNKEFKIMEMLMSNPRQIFSKDHLYE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
            I+G+ +   + + V  HI  +R ++      DP+
Sbjct: 179 TIWGV-EATGQSHTVTEHIRNIRIRIHK---IDPM 209


>gi|54022964|ref|YP_117206.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014472|dbj|BAD55842.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 225

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 27/202 (13%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           RAL ++GY        V++E F        L+ +   D+  ++  L   G   LE+ R +
Sbjct: 19  RALGREGYT-------VTVESFGPAVLRRALEGN--HDLLILDLGL--PGMDGLEVCRQV 67

Query: 68  RAHSQVPLIGISDYPSLQTT-----LDF---FDSGVDDVVNKPIHHREILARVAAIYRRL 119
           RA         +D   L  T     +DF    D+G DD V KP    E+LARV A+ RR 
Sbjct: 68  RARG-------ADLAVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELLARVRALLRRS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   E G IR+    R   V G    L  +E  +L+ L+   G+ V +  I   ++G
Sbjct: 121 GIGDEAVEVGGIRLEPAARRVLVNGVEVGLANKEYELLKVLIDRAGQVVPRETILREVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
              E      ++ H+S LR+K+
Sbjct: 181 -DAELRGSKTLDMHMSWLRRKI 201


>gi|315650626|ref|ZP_07903686.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315487123|gb|EFU77445.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 14/162 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR +S VP+I IS + +    +     G DD + KPI       ++ AI RR        
Sbjct: 66  IRQNSNVPIIFISSHNNQVDMVSAMQFGADDYITKPIDINLTRVKIQAILRR-----TYE 120

Query: 127 ETGPIR--VFS----DGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            T P+   VF     D    ++ GE F   L + E  ILEYL   RGK   +  I +  +
Sbjct: 121 YTMPVDKPVFEGISLDISKAKLLGEGFCIDLTKTELLILEYLFNMRGKIAKREDIMNHCW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D+ +++N +  +I++LRKKLR     + + +K+ +GY +
Sbjct: 181 Q-GDDFIDDNTLAVNITRLRKKLRGVGYKEFIQTKKGMGYYL 221


>gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
 gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
          Length = 242

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 69  IEVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V           R E   I +         +G+  PL  +E  +L +   N  +   K+Q
Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFALNPEQVFTKSQ 188

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           +F  ++G  D  +E +N V  HI KLRKK+
Sbjct: 189 LFRNVWG--DNYLEDDNTVMVHIRKLRKKI 216


>gi|227540357|ref|ZP_03970406.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227239681|gb|EEI89696.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 4/139 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-R 125
           +R   Q   I IS   S+   +   D G DD + KP H  E+ AR+ A+ RR +++ N  
Sbjct: 66  LRGKEQQHTIIISARDSIDDKIRGLDLGADDYLTKPFHLSELNARIKAVLRRKQLAGNPV 125

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            +   +++  D R   V  +     R+E  +  + + N+ K V KT +   ++G  D  +
Sbjct: 126 VQLNNLQINYDTRSICVDDQDLHFSRKEFDVFSFFVLNKNKLVTKTALAEHVWG-DDSDM 184

Query: 186 EENV--VESHISKLRKKLR 202
            +N+  + S I  +RKKL+
Sbjct: 185 ADNLDFIYSQIKNIRKKLK 203


>gi|227532872|ref|ZP_03962921.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189477|gb|EEI69544.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 241

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  SQVP+I ++    +   +     G DD + KP    E++ARV    R     +N
Sbjct: 76  RKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALR-----HN 130

Query: 125 RAETGPIRVFS------DGRDPEVQ-GEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    P  +F       D  +  VQ GEV  PL +RE  +L  L+A++ +  ++  +  A
Sbjct: 131 RQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDA 190

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
           ++   FD   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 191 VWETDFDG--QPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 237


>gi|167769138|ref|ZP_02441191.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
           17241]
 gi|167668778|gb|EDS12908.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 90/216 (41%), Gaps = 29/216 (13%)

Query: 1   MFVLIDDRALV--------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           + V  DDR +         KDGY     +DG           EE L     E    I   
Sbjct: 6   ILVCDDDRNICELLRLYLEKDGYTVSIANDG-----------EEALAKFTAEAPDLILLD 54

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           ++       ++ R IR  S  P+I I+        +   + G DD V KP   +EI+ARV
Sbjct: 55  IMMPKLDGWQVCREIRKKSDCPIIMITAKGETFDKVLGLELGSDDYVVKPFDPKEIVARV 114

Query: 113 AAIYRRLKVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRG 165
            AI RR   S + AE     V  D         + +V G V   P +E  +L +L +N  
Sbjct: 115 KAIMRR--ASKSSAENDVKEVAYDKLVVNMTKYELKVDGRVVDTPPKELELLYHLASNPN 172

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   + Q+   ++G F+   +   V+ HI +LR+KL
Sbjct: 173 RVYTRDQLLDEVWG-FEYYGDSRTVDVHIKRLREKL 207


>gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
 gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
          Length = 233

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 18/191 (9%)

Query: 34  FEEWLQSSAREDVSAIEAF--------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           F+  + S+  + +SA E +        L+  G    ++ R +RA SQVP+I +S    + 
Sbjct: 29  FDTKIVSNGEDALSAFETYQPNLVLLDLMLPGIDGYQVCRELRAKSQVPIIMLSAKGEVF 88

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---------ETGPIRVFSD 136
             +   + G DD + KP   +E++ARV A+ RR +     A         E   + +   
Sbjct: 89  DKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQPVKPEAPAAEKVKCVEYDGLTINLT 148

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
                  G+   +P +E  +L +L A+  +   + Q+   I+G ++   +   V+ HI +
Sbjct: 149 NYSVLCDGQNVDMPPKELELLYFLAASPNQVFTREQLLDQIWG-YEYIGDTRTVDVHIKR 207

Query: 197 LRKKLRNKLGF 207
           LR+K+++  G+
Sbjct: 208 LREKIKDHPGW 218


>gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa]
 gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa]
          Length = 239

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR     L  
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRRTENPTLST 130

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++   E    G +++  + R     GE   L   E  +LE L++  G+  ++ QI   ++
Sbjct: 131 TSTNGENLQIGFLKIDINKRQVFKNGERIRLTGMEFSLLELLISKMGEPFSRAQILQEVW 190

Query: 179 GLFDE-AVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           G   E  ++  VV+ HIS+LR KL  N    D + + R +GY
Sbjct: 191 GYTPERHIDTRVVDVHISRLRSKLEENPSNPDLILTARGIGY 232


>gi|238792041|ref|ZP_04635677.1| Two-component system response regulator [Yersinia intermedia ATCC
           29909]
 gi|238728672|gb|EEQ20190.1| Two-component system response regulator [Yersinia intermedia ATCC
           29909]
          Length = 227

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 18/208 (8%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGFN+   L  +  + ++   D +A+   ++      +++ R +R  S++P+I ++    
Sbjct: 23  EGFNAELVLTGKAGIAAALSGDYTALILDIMLPDMSGIDVLRQVRKKSRLPIIMLTAKGD 82

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVSNNRAETGPIRVFSD 136
               +   + G DD + KP + RE++AR+ A+ RR           ++    G + +   
Sbjct: 83  NIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDEHPDVSSADDSIISHGDLTLNPS 142

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R  E QG+ F L   E  +LE L+ +  + V K ++     G   EA + + V+ HIS 
Sbjct: 143 TRSSEWQGKAFDLTASEFNLLELLLRSPDRVVTKDELSDKGLGRPREAYDRS-VDVHISN 201

Query: 197 LRKKLR----NKLGFDPVDSKRFLGYSI 220
           +R+KL     NKL  + V   R +GY I
Sbjct: 202 IRQKLAALAGNKLNIETV---RSIGYRI 226


>gi|317405506|gb|EFV85814.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 237

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 13/154 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP++ ++   SL+  L  F  G DD + KP    E+ AR+ A+ +R K S        +R
Sbjct: 84  VPVLVLTARDSLEDKLAGFSHGADDYLTKPFALLEVEARLLALIQRAKGST----VDTVR 139

Query: 133 VFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           VF D       R   + G+   L R+   ILE L+ + G+ V++ ++ S ++G   E   
Sbjct: 140 VFGDLAYDTRSRTASIGGKPVHLTRKATLILEALLRDPGRVVSREELESQLWG--SEPPS 197

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + S +  LR+ L +  GFD +++    G+ +
Sbjct: 198 SDALRSQVHLLRRALADA-GFDGIETLHGTGWRL 230


>gi|291005208|ref|ZP_06563181.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 20/139 (14%)

Query: 77  GISDYPSLQTT--------LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRA 126
           GISD P++  T        +    +G DD V KP     + AR+ A+ RR + S      
Sbjct: 65  GISDVPTIVATARDDEREIVRLLRAGADDYVVKPFSSEHLNARIEAVLRRARGSRPPQAV 124

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI----YGLFD 182
           E G +R+  D R   + G    L RRE  +L YL A  G+ V + ++ + +    YG   
Sbjct: 125 EVGGLRIDLDSRAATLDGAELELTRREFDLLAYLAARPGRVVPRRELLAQVWRQSYG--- 181

Query: 183 EAVEENVVESHISKLRKKL 201
              ++  ++ H+S LR+KL
Sbjct: 182 ---DDQTIDVHLSWLRRKL 197


>gi|217968617|ref|YP_002353851.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217505944|gb|ACK52955.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +  P++ ++   S +  +   + G DD + KP    E+ AR+ A+ RR          G 
Sbjct: 77  APTPVLVLTARGSTEERVHGLNLGADDYLPKPFELAELEARIKALLRRAGNQVPLVRLGR 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +   +  R   V G+   L  RE  +LE L+A  G+ VA+  +F  ++  FD       +
Sbjct: 137 LEFDTTTRMAAVDGQALALTPRELAVLEALLARVGRPVAREALFEKVFE-FDADARVEAI 195

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E ++S+LRKKL        +++ R LGY
Sbjct: 196 EIYVSRLRKKLEG--AGVAINTLRGLGY 221


>gi|225853570|ref|YP_002733803.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis ATCC 23457]
 gi|254718183|ref|ZP_05179994.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. 83/13]
 gi|256262946|ref|ZP_05465478.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|265983140|ref|ZP_06095875.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306837697|ref|ZP_07470566.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NF 2653]
 gi|225641935|gb|ACO01849.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis ATCC 23457]
 gi|263092820|gb|EEZ16995.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661732|gb|EEZ31993.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306407255|gb|EFM63465.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NF 2653]
 gi|326410142|gb|ADZ67207.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis M28]
 gi|326539862|gb|ADZ88077.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis M5-90]
          Length = 228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +     G DD V KP    E+LARV A+ R
Sbjct: 64  IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         LKV +   +    RV+   ++ EV      L   E R+LEY M + G+  
Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++Q+   ++G  D  V++  V+ H+ +LRK +      DP+ + R  GYS
Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAADPIRTVRGAGYS 226


>gi|224372302|ref|YP_002606674.1| response regulator receiver domain protein [Nautilia profundicola
           AmH]
 gi|223588456|gb|ACM92192.1| response regulator receiver domain protein [Nautilia profundicola
           AmH]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLP 150
           DD + KP    E++ARV A+YRR    +N      IRV     +PE +     G++  L 
Sbjct: 94  DDYLTKPFEFEELIARVKALYRR----SNNLNDNIIRVADLELNPETKEVRRAGKLIELT 149

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
            ++  +L+YLM N+ K V    I S ++ + DE +  NV+  +IS LRKK+        +
Sbjct: 150 AKQFELLKYLMINKNKIVNTDMIQSNLWEMDDE-INSNVINVYISHLRKKIDKDFDKKLI 208

Query: 211 DSKRFLGYSI 220
            + R +G+ +
Sbjct: 209 KTYRGMGFKL 218


>gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555]
 gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555]
          Length = 231

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151
           G DD + KP   RE+LARV AI RR  +K  +     G I +  D  +    GE   L  
Sbjct: 99  GADDYITKPFSVRELLARVKAILRRTAIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTL 158

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-- 209
           +E  +L+ L+ N+G+ + +  +   I+G ++   E   V+ HI  +R+K+ +     P  
Sbjct: 159 KEFELLQMLIKNKGRVMTRDFLLDKIWG-YEYVGETRTVDVHIRHIRQKIES-CDKKPKY 216

Query: 210 VDSKRFLGYSIDWN 223
           +++ R +GY  +W 
Sbjct: 217 IETIRGIGYRFNWK 230


>gi|126651030|ref|ZP_01723241.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592231|gb|EAZ86280.1| two-component response regulator [Bacillus sp. B14905]
          Length = 230

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 9/142 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120
           IRA   +P+I +S        +     G DD V KP H  E+LARV +  RR        
Sbjct: 69  IRAERNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQLGTYS 128

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   + +  D ++  ++GE   L   E +I E LM N G+  +  +I+  ++  
Sbjct: 129 EGATKVEIDGLTLDEDAKEIILEGEPVRLTPIEYKITELLMKNAGRVFSIREIYERVWN- 187

Query: 181 FDEAVE-ENVVESHISKLRKKL 201
            +EA   EN+V  HI K+R+K+
Sbjct: 188 -EEAYNAENIVAVHIRKIREKI 208


>gi|167647856|ref|YP_001685519.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350286|gb|ABZ73021.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 10/222 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD  L +   +AL GD G +++     E  ++L  +   D   ++  L  K + V
Sbjct: 3   ILLVEDDPDLSRQLKLAL-GDAGYAVDHAPDGEEAQFLGENEPYDAVVLDLGLP-KVDGV 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119
             L R  R +   P++ ++   S    +  FD+G DD + KP H  E +    A + R  
Sbjct: 61  SVLERWRRGNIATPVLILTARGSWNEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G +R+        V GE   L   E R+L Y+M ++G+ + +T++   +Y 
Sbjct: 121 GHASPSLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD   + N +E  I +LRK    KLG + +++ R LGY +
Sbjct: 181 QDFDR--DSNTIEVFIGRLRK----KLGAERIETVRGLGYRL 216


>gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family
           protein [Actinomyces oris K20]
 gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
 gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
          Length = 249

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 15/160 (9%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++    +   +     G DD V KP    E++AR+ AI RR     N+ + G +R
Sbjct: 87  TPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHAIENQ-DDGVVR 145

Query: 133 VFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           V     D +   EV+       L   E ++L YLM N G+ V+K QI   ++  +D   +
Sbjct: 146 VADLVLDEDAH-EVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHVWE-YDWNGD 203

Query: 187 ENVVESHISKLRKKLRNKLGFD--PV----DSKRFLGYSI 220
             +VES+IS LR+K+    G D  PV     ++R +GY +
Sbjct: 204 AAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243


>gi|325955230|ref|YP_004238890.1| two component transcriptional regulator, winged helix family
           [Weeksella virosa DSM 16922]
 gi|323437848|gb|ADX68312.1| two component transcriptional regulator, winged helix family
           [Weeksella virosa DSM 16922]
          Length = 219

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 11/157 (7%)

Query: 61  LELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           LE+ + IR     +   P+I I+   ++Q T++   +G +D + KP    E++AR+  +Y
Sbjct: 63  LEVCKTIRNTENINQNTPIIFITAKDTVQDTIEGLHAGANDYLKKPFDFNELVARI-RVY 121

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R     NR + G I +           E+  L  +E  +L+YL  ++ +   + +I   
Sbjct: 122 LRASSYQNRLQFGSIALDQQTHHVYSNQELIDLTHKEYELLQYLFIHKNRACTRKEILEN 181

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNK---LGFDP 209
           ++ + FD   + +V +  ++ +RKKL  K   LG +P
Sbjct: 182 VWDIHFD--YDSSVTDVFVNAIRKKLNLKKMILGCEP 216


>gi|301048805|ref|ZP_07195803.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300299390|gb|EFJ55775.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|297528706|ref|YP_003669981.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297251958|gb|ADI25404.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 232

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL R+IR    VP++ +S     +  +     G DD + KP   +E+ AR+    RR +
Sbjct: 62  MELCRLIRERVDVPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDCHLRREE 121

Query: 121 --VSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              SN R       +  D    EV  +G+  P  ++E  I++ LM N+    +K +IF  
Sbjct: 122 RIRSNERYLLSSKNMTIDLLANEVFCKGKKLPFTKKEYEIVKLLMLNQKIVFSKERIFER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDWN 223
           ++G+  E+  + V ES I  +RKK++     DP  S  +   G    W+
Sbjct: 182 VWGIDSESQLDTVAES-IKNIRKKIK---AVDPDTSYIQTLYGLGYKWD 226


>gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 224

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 5/159 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI ++   +P++ ++   + +  +   D G DD V KP    E+LAR+ A+ RR  V+ N
Sbjct: 65  RIRQSGCSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRRGNVAPN 124

Query: 125 RA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   +R+     +     ++  L  +E  +LE  + N    ++++ I   ++  F++
Sbjct: 125 PILEWQQLRLDPSSYEVTYSDQILHLTPKEYGLLELFLRNENLVLSRSAILDNLWS-FED 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
              E  V+ HI  LRKKLR K+G  P  +++   +GY +
Sbjct: 184 PPSEEAVKVHIKDLRKKLR-KVGAPPDFIETVYGVGYRL 221


>gi|120612912|ref|YP_972590.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120591376|gb|ABM34816.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 236

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA S  VP++ I+   + Q  ++   SG DD + KP+   E +AR +A+ RR 
Sbjct: 60  LEVIRTVRAASMSVPILFITRRNAEQDLVEALASGADDFMTKPLRMGEFIARCSALLRRA 119

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V +     G  R   D R   V      L  +E  +  ++  N G+ +++  +  AI
Sbjct: 120 YPQVVSGTLMFGRYRFDPDKRSLLVDDVPVELKNKEYELALFMFQNAGRLLSREHLREAI 179

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G   +A   + +++HIS+LR KL
Sbjct: 180 WGGIHDAPSRS-LDTHISRLRAKL 202


>gi|22536883|ref|NP_687734.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25010796|ref|NP_735191.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76786877|ref|YP_329467.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76798183|ref|ZP_00780434.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77406409|ref|ZP_00783468.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77408360|ref|ZP_00785101.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77410786|ref|ZP_00787144.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77413081|ref|ZP_00789282.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22533733|gb|AAM99606.1|AE014224_9 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|23095150|emb|CAD46385.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561934|gb|ABA44518.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76586446|gb|EAO62953.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77160874|gb|EAO71984.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77163165|gb|EAO74118.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77173041|gb|EAO76169.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77174973|gb|EAO77783.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|319744748|gb|EFV97090.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 236

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 14/171 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 -----VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                V+   A+        G +++  D    + +GE   L  RE  +L +L  + G+ +
Sbjct: 121 NIETAVAEESAQNASSDITIGELQILPDAFIAKKRGEEIELTHREFELLHHLATHIGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            +  +   ++G +D   +   V+  + +LR+K+ +  G  + + ++R +GY
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGY 230


>gi|323439204|gb|EGA96931.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus O11]
 gi|323442418|gb|EGB00047.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus O46]
          Length = 231

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 17/200 (8%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRA 69
           D  I    D  ++L+ +N    E   Q+  +  +   +  L+  G   +  L L   IR 
Sbjct: 11  DHAITHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
           H+ +P+I IS     QT +   D+G +D + KP +  E+ AR+  I R   ++ +  ET 
Sbjct: 71  HTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER---IAKSHQETN 127

Query: 130 PIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              VF++G        +   +  +   L   E  +LE L  ++GK +    I   IYG  
Sbjct: 128 I--VFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLANHKGKVLTYEMILKRIYGYV 185

Query: 182 DEAVEENVVESHISKLRKKL 201
           ++  E   +  H++ LR+KL
Sbjct: 186 NKT-EMPSLRVHMTSLRQKL 204


>gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 17/188 (9%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHS-QVPLIG 77
            +L  E W  ++A + + A+        + V+   ++PR+        +RAH   +P++ 
Sbjct: 26  QALRHEGWETATASDGLDALAKAASFHPDVVILDVQMPRMDGLETLERLRAHDPHMPVLF 85

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRV 133
           ++   ++   +    +G DD V KP    E+ ARV A+ RR   +     T      + +
Sbjct: 86  LTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRRSGRAQQTRSTVLTVADLTL 145

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             +  D    GE   L   E  +L +LM N G  ++K +I  A++  +D   + NVVE +
Sbjct: 146 NVESHDVSRGGENITLTNTEFELLRFLMENVGIVLSKQRILDAVWS-YDFGGQVNVVELY 204

Query: 194 ISKLRKKL 201
           IS LRKK+
Sbjct: 205 ISYLRKKI 212


>gi|307277355|ref|ZP_07558453.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
 gi|306505989|gb|EFM75161.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 20/174 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV +I RR +
Sbjct: 61  MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQ 120

Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRI------LEYLMANRGKRV- 168
           +   +      E GP+ +  D        EV  + R+E ++      + YL+A+   RV 
Sbjct: 121 MQLTKEEPDELEVGPLMINKDSH------EVKTIERKEIQLTALEFGILYLLASHPNRVF 174

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
           +  +IF  ++   +  V    V  H+S LR K+    G + V    + +GY ID
Sbjct: 175 SADEIFERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|302188560|ref|ZP_07265233.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 227

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ + +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 63  GRNGMDICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   S      G + V          G    L   E R+L     + G+  ++  +   
Sbjct: 123 RRSSSSEPHTPKG-LLVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SHI  LR+KL     G DP+ S   +GY ++ 
Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227


>gi|298290746|ref|YP_003692685.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927257|gb|ADH88066.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 263

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 28/213 (13%)

Query: 16  IALFGDDGVSLE---GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +A  G++G+ L    G++ L  +  L    R D  A+ A L G+G+K             
Sbjct: 66  VASDGEEGLMLAREGGYDVLLVDRML---PRRDGLALIAELRGRGDKT------------ 110

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGP 130
            P + +S    +   +    +G DD + KP    E+LARV A+ RR   + ++       
Sbjct: 111 -PALILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEALARRGGPQAADTVYRVAD 169

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
           + +          G+   L  RE R+LEYLM + G+ V +T +   ++   FD   + NV
Sbjct: 170 LELDRLAHRCTRAGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP--QTNV 227

Query: 190 VESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           ++ H+S+LR K+    GFDP  + + R  GY I
Sbjct: 228 IDVHVSRLRSKIDK--GFDPPLLHTVRGAGYII 258


>gi|255524527|ref|ZP_05391482.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186025|ref|ZP_06854430.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
 gi|255511823|gb|EET88108.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049293|gb|EFG88722.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
          Length = 220

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 12/164 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L   IR     P+I ++        +     G DD ++KP    E+ ARV A  RR  
Sbjct: 60  FKLCEKIRNSVDSPIIFLTAKTEESAIVKGLALGGDDYISKPFGVMELNARVEAYLRR-- 117

Query: 121 VSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              NR ++        I +  D ++  + G      + E  I EYL  NRGK   K  IF
Sbjct: 118 --QNRGKSTRKLIYENITIDFDKKEISIGGNAVNFTKNEYNICEYLALNRGKVFTKQAIF 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +IY L D   + +V+  +I  +R K + K    P+++   +GY
Sbjct: 176 ESIYDL-DSDTQFSVITEYIRLIRNKFK-KFDCSPIETVWGVGY 217


>gi|228936126|ref|ZP_04098931.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823536|gb|EEM69363.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL Y M N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMRNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 241

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 17/124 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR----------LKVSNNRAE------TGPIRVFSDG 137
           G DD + KP   RE+LAR+ AI RR          LK SN+ AE       G I++    
Sbjct: 95  GADDYMTKPFSPREVLARMKAIMRRMSSKSKAEEALKESNSTAEQDELIKVGDIQIDPSQ 154

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
            +  V+G+   +  +E  +L Y++    + +++ Q+  AI+  FD A E  +V+ HIS L
Sbjct: 155 YEVIVRGKKIDVTPKEFELLMYMIKRINRILSREQLLDAIWN-FDYAGETRIVDVHISHL 213

Query: 198 RKKL 201
           R+K+
Sbjct: 214 REKI 217


>gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 17/216 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L  +GY  L   +G   EG N +        +A  DV  ++  +        E+ R +
Sbjct: 20  RGLAFEGYEVLTAANGA--EGLNKM-------LTAEPDVVVLDVMM--PQVDGFEVCRRM 68

Query: 68  R-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----S 122
           R   S VP++ ++    ++  +   D G DD + KP    E+LARV A+ RR       +
Sbjct: 69  REGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKTEQQDNN 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            NR     +++ ++ R+    G+   L  +E  +L   M N  + +++  I   I+G +D
Sbjct: 129 GNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIWG-YD 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + E NV+E +I+ LR+K     G   + + R  GY
Sbjct: 188 YSGESNVLEVYIAMLRQKTEQDGGKRLIRTIRGAGY 223


>gi|139438314|ref|ZP_01771867.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC
           25986]
 gi|133776511|gb|EBA40331.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC
           25986]
          Length = 250

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +      G+  EGF+     E+  + AR    A+   ++      
Sbjct: 9   MIYYVEDDDNIRDLTVYALRKQGIEAEGFSC--DGEFKAAVARRVPDAVLLDIMLPDTDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAAIYR 117
           L + R +RA      + I    +  T LD     D G DD + KP    E+ +R  A+ R
Sbjct: 67  LAIMRRLRADRLTATVPIMMLTAKDTELDKVMALDGGADDYLTKPFSLMELASRCRALLR 126

Query: 118 R---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R   +K +++    G I +    R+  V GE   L  RE  +LEYLM   G    +  + 
Sbjct: 127 RGGMVKQASDVLSVGDIVLSPSHREVTVAGESLKLTLREFDLLEYLMRKPGVVFTRESLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++G +D       V+ H+  LR+KL        +++ R +GY +
Sbjct: 187 QSVWG-WDFDGGSRTVDVHVQTLRQKLGEHAS--AIETVRGVGYRL 229


>gi|330810224|ref|YP_004354686.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378332|gb|AEA69682.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 14/156 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ IS    +   +    +G DD + KP    E+ ARV  + RR   +N   E   + 
Sbjct: 74  TPILMISALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRR---NNGAREPETVL 130

Query: 133 VFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             +D       R+    G++  L   E ++LE+LM N G+ +++  IF  ++G  FD   
Sbjct: 131 RVADLELNLISREASRNGQLLSLLPTEYKLLEFLMRNSGQILSRMMIFEEVWGYHFDPGT 190

Query: 186 EENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             N+++ HI +LRKK+ +  G +P + + R  GY I
Sbjct: 191 --NLIDVHIGRLRKKI-DPPGLEPLIRTVRGSGYVI 223


>gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 244

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ ++IR  S  P+I ++        +   + G DD + KP   RE+++RV A+ RR++
Sbjct: 67  FEVLKLIRESSNTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRRVE 126

Query: 121 VSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++  A+   I+V          R+  V+G +  L   E R+L +L+ N G  +   Q+ 
Sbjct: 127 ATSLTAKNEIIQVDDRLKIDFGRREVWVEGNLVKLRPTEYRLLYHLVQNAGWVMTYEQLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           + ++G ++   EE+ V  +++ LR+K+      DP + K  L
Sbjct: 187 TKVWG-YEYRDEEHYVRLYVNYLRQKIEE----DPSNPKYIL 223


>gi|13324638|gb|AAK18821.1|AF327738_3 response regulator Rr1 [Streptococcus thermophilus]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP     +LA++  + RR        
Sbjct: 67  IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + +     D   QGEV  L + E +IL+ L  + G  V++  +   ++   D 
Sbjct: 127 NLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFEHAGNIVSREDLMKELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  +++ LRKKL      D +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVAHLRKKLEAVGLKDFIETKKGVGYGL 222


>gi|330885633|gb|EGH19782.1| sensor histidine kinase BaeS [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 690

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 3/166 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ R +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 526 GRDGMDICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 585

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   S +      ++V          G    L   E R+L     + G+  ++  +   
Sbjct: 586 RRTS-STDPHTPKVLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDR 644

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +Y      V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 645 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 689


>gi|323490769|ref|ZP_08095971.1| two-component response regulator [Planococcus donghaensis MPA1U2]
 gi|323395651|gb|EGA88495.1| two-component response regulator [Planococcus donghaensis MPA1U2]
          Length = 218

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P+I ++     +  +     G DD + KP    E+LAR+ A+ RR   
Sbjct: 58  EVCRDIRKFSDIPIIMLTAREQQEDVVKGLRLGADDYMTKPFGEEELLARMEAVLRR-SA 116

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R E   +    +G +   + +   L  +E  +L  LM N  K   + ++   ++G +
Sbjct: 117 PARRIEFRGLLWDEEGFELSYEQKSIRLTPKEFSMLGLLMKNPNKVFERDRLLELVWG-Y 175

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           D   E   V+SH+  +R+K+R   GF PVD
Sbjct: 176 DSETEGRTVDSHVRNIREKVRQA-GF-PVD 203


>gi|312889820|ref|ZP_07749366.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311297746|gb|EFQ74869.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 227

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 12/166 (7%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL R IR A  ++P+I ++   +    ++ FD+G DD + KP   RE+L R+ A+  R 
Sbjct: 60  IELCREIRMAKPELPVILLTALGTTDDKVEGFDAGADDYLVKPFDFRELLVRIRAVMNR- 118

Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +   A   P+  ++D       +     G+V  L  +E ++LEY++ +  + + + +I
Sbjct: 119 -KNGTGASISPVTKYADLEINNQTKSVTRSGKVIALTPKELKLLEYMVQHADRVLTRAEI 177

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              ++   FD     N ++ +I+ LRKK+        + ++  LG+
Sbjct: 178 AEKVWNTHFDTGT--NFIDVYINYLRKKIDKDFSDKLIHTRPGLGF 221


>gi|311070908|ref|YP_003975831.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310871425|gb|ADP34900.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 258

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 8/150 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L +IIR  S++P++ IS              G DD + KP    E+ ARV A  RR  
Sbjct: 89  MDLLKIIREQSKIPVLIISAKDGDVEKALGLGFGADDYIAKPFSMIELSARVKAAIRRAT 148

Query: 121 --VSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               N  AET  IRV     D E      + EV  L  +E +I++ L  N  K   + QI
Sbjct: 149 QYAVNEPAETNIIRVHELTLDIENVLITKKDEVIQLTSKEWQIIKLLFTNPKKVFTREQI 208

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + +++   D   +EN++  H+ +LR+K+ +
Sbjct: 209 YRSVWN-EDYYGDENIINVHMRRLREKIED 237


>gi|300692441|ref|YP_003753436.1| response regulator transcription regulator protein [Ralstonia
           solanacearum PSI07]
 gi|299079501|emb|CBJ52179.1| putative response regulator transcription regulator protein
           [Ralstonia solanacearum PSI07]
          Length = 246

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 15/171 (8%)

Query: 61  LELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++L  ++R+  Q  +P++ ++     +  +     G DD + KP H  E+ ARV A+ RR
Sbjct: 60  IDLLSVVRSRHQEVLPILFVTAEERERGLVRALGQGADDYIAKPFHIPELRARVEALLRR 119

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +  +      GP R     R   + GE   L   E ++   L AN G+ +++  IF 
Sbjct: 120 AYPVPYAGMPFAVGPYRFNPQRRQVTLHGEHLALTGIEFQLAMLLFANAGRTLSRDHIFG 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL-----GYSID 221
            ++G  + A     ++SH+S++R KL+     DP +  R +     GY +D
Sbjct: 180 QVWGR-NSAEYTRTIDSHVSRIRLKLQ----VDPANEVRLVAVYKHGYRLD 225


>gi|289674391|ref|ZP_06495281.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 220

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 13/166 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R +RA +  +P++ ++        +   D+G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LDLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR- 118

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S  RA    E   I +    +    +G   P+   E ++L  LM   GK V + ++ +
Sbjct: 119 --SQGRAQPLLEHAGISLDPTSQQVSFKGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +YG + + VE N +E  I  LRKKL  +L    + + R +GY ++
Sbjct: 177 TLYG-WQDKVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217


>gi|255524800|ref|ZP_05391750.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188663|ref|ZP_06857051.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
 gi|255511467|gb|EET87757.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296046927|gb|EFG86373.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
          Length = 219

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 20/221 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + VL+ +  L KDG++    DD   L      +++  L      D+              
Sbjct: 13  ILVLVKN-VLAKDGHVITIVDDAKKLSVNEYTKYDLILLDVMMPDIDG------------ 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            EL + IR     P++ ++        +     G DD + KP    E+ ARV A  RR  
Sbjct: 60  FELCKKIRELVDSPILFLTARTMESDIMFGLGIGGDDYITKPFGTGELRARVNAHLRREN 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +N      ++     ++  +Q    P+ + E  I E+L+ NRG+   K QI+ A+YG
Sbjct: 120 REKHNMISVSGMKFNLASKEIIIQDRKVPMTKSEYAICEFLVRNRGQVFTKEQIYEAVYG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGY 218
              E+    + E HI  +R KL   L F+  P+++   +GY
Sbjct: 180 YERESDSSGIAE-HIKNIRAKL---LVFELSPIETVWGIGY 216


>gi|229153018|ref|ZP_04281199.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228630438|gb|EEK87086.1| Two-component response regulator [Bacillus cereus m1550]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL Y M N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVNRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
 gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 98/205 (47%), Gaps = 9/205 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++   + + EE LQ +  ++   +   L+      L 
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDC--AYDGEEALQMAKNKEYDMVLLDLMLPKVDGLS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIREFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIMRRTGKP 123

Query: 120 KVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + +R+   E G + +  + R   + G+   L  +E  +LE L+ N GK  ++  +   
Sbjct: 124 AAAESRSRVVEAGDLVLDCESRRVTIAGKEINLTAKEFDVLELLVFNPGKVYSRENLLDT 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G ++   +   V+ HI +LR+K+
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKI 207


>gi|209525726|ref|ZP_03274263.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209493895|gb|EDZ94213.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 774

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L R +R+H+ Q+P++ ++   S +  +   D+G DD + KPI   E++AR+ A+ RR 
Sbjct: 60  IALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +S       G + +     +   Q  V PL  +E  ++E  + +  +  +   I   ++
Sbjct: 120 TISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            + +E   +N V +HI  LR KL++  G DP  +++   +GY I
Sbjct: 180 SI-EEPAADNTVRAHIKSLRNKLKDA-GGDPKLIENVYGIGYRI 221



 Score = 34.7 bits (78), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           ++L ++IR   +   +P++ ++++   +T  + F +G DD ++KP+   E++AR+ +   
Sbjct: 545 IDLCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLH 604

Query: 118 RLKVSNNRAE 127
           R ++  N AE
Sbjct: 605 RSRLWRNIAE 614


>gi|162295946|gb|ABX83919.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR + +N   
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137

Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL+ +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLKEQGIFQMLVNVRGVGYRLD 238


>gi|116751033|ref|YP_847720.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700097|gb|ABK19285.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 236

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 2/116 (1%)

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD--PEVQGE 145
           L+ F +G DD V+KP   RE+L RV A+ RR        +     +  DG +     +  
Sbjct: 97  LEGFKAGADDYVSKPFSLRELLMRVEAVLRRAGKIAGDEQVMVSGILFDGGNLLASFRER 156

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              L RRE  I+ YL  +R + V+K ++   ++   D  VE   V+ H+ KLRKK+
Sbjct: 157 TAELTRREMDIVAYLHRHRDRVVSKKELLKEVWNYADPDVETRTVDIHMLKLRKKI 212


>gi|308234201|ref|ZP_07664938.1| two component transcriptional regulator, winged helix family
           protein [Atopobium vaginae DSM 15829]
          Length = 231

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R  R  S   +I ++   S    L    SG DD + KP + + +LA +A++ RR + +
Sbjct: 66  LAREFRQSSTGAIIVLTSRNSELDELVCLSSGADDFIAKPYNPQILLAHIASVLRRVMPM 125

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+ +A     G I +          G+   L + E +IL  L+  + + V++TQI  A++
Sbjct: 126 SDKQASVLRCGTIELNLKTCTASAHGKTTELTKNELKILTLLIQRQTEVVSRTQIQEALW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              DE V++N +  ++S LR++L        V + R LGY I
Sbjct: 186 Q-SDEYVDDNTLTVNVSHLRQRLAYIGEPHAVVTHRGLGYCI 226


>gi|218661396|ref|ZP_03517326.1| two-component response regulator protein [Rhizobium etli IE4771]
          Length = 251

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 5/156 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           R     P++ +S    +   +    +G DD + KP    E+LARV  + RR         
Sbjct: 94  RKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDVI 153

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
              G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++   FD  
Sbjct: 154 YRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 212

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + NV++ H+S+LR K+        + + R  GY I
Sbjct: 213 -QTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 247


>gi|254487709|ref|ZP_05100914.1| DNA-binding response regulator [Roseobacter sp. GAI101]
 gi|214044578|gb|EEB85216.1| DNA-binding response regulator [Roseobacter sp. GAI101]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R IR  + + P++ ++   S+   +   D G DD + KP  HRE+ AR+ A+ RR  
Sbjct: 61  DLLRNIRNRADRTPVLMLTARFSVDDRVSALDLGADDYLVKPFDHRELEARLRALLRRET 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  +   +  +      E  G    L RRE  +L  L+ +  + ++K +++  IY 
Sbjct: 121 DQKSDVQKVAELSFYPATLSAEHSGNRIELTRREAALLGVLLRHARQTISKERLYEGIYS 180

Query: 180 LFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FDE  V  N +E +I +LR+K+        ++++R +GY I
Sbjct: 181 -FDEVDVGLNAIELYIGRLRRKIAGSGAV--IETQRGMGYRI 219


>gi|241203812|ref|YP_002974908.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857702|gb|ACS55369.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 248

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 5/156 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           R     P++ +S    +   +    +G DD + KP    E+LARV  + RR    +    
Sbjct: 91  RKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPDQDVV 150

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
              G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++   FD  
Sbjct: 151 YRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 209

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + NV++ H+S+LR K+        + + R  GY I
Sbjct: 210 -QTNVIDVHVSRLRSKIEKDYSQPLLKTIRGAGYMI 244


>gi|116251207|ref|YP_767045.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255855|emb|CAK06936.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 248

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 5/156 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           R     P++ +S    +   +    +G DD + KP    E+LARV  + RR    +    
Sbjct: 91  RKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPDQDVV 150

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
              G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++   FD  
Sbjct: 151 YRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 209

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + NV++ H+S+LR K+        + + R  GY I
Sbjct: 210 -QTNVIDVHVSRLRSKIEKDYSQPLLKTIRGAGYMI 244


>gi|16761953|ref|NP_457570.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16766477|ref|NP_462092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29143440|ref|NP_806782.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56415118|ref|YP_152193.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|167551911|ref|ZP_02345664.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990273|ref|ZP_02571373.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231775|ref|ZP_02656833.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238132|ref|ZP_02663190.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243002|ref|ZP_02667934.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262866|ref|ZP_02684839.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463615|ref|ZP_02697532.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819761|ref|ZP_02831761.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445795|ref|YP_002042442.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194449190|ref|YP_002047173.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194472187|ref|ZP_03078171.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736474|ref|YP_002116131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197247614|ref|YP_002148104.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262224|ref|ZP_03162298.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364047|ref|YP_002143684.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198242500|ref|YP_002217155.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387607|ref|ZP_03214219.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928260|ref|ZP_03219460.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207858436|ref|YP_002245087.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213027201|ref|ZP_03341648.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213052528|ref|ZP_03345406.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213420412|ref|ZP_03353478.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213424348|ref|ZP_03357172.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581572|ref|ZP_03363398.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213614424|ref|ZP_03371250.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213647443|ref|ZP_03377496.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855234|ref|ZP_03383474.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289827112|ref|ZP_06545901.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|291080733|ref|ZP_06534499.2| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|54038991|sp|P66796|QSEB_SALTI RecName: Full=Transcriptional regulatory protein qseB
 gi|54041930|sp|P66795|QSEB_SALTY RecName: Full=Transcriptional regulatory protein qseB
 gi|25300979|pir||AI0888 probable two-component system response regulator. STY3354
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16421733|gb|AAL22051.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504255|emb|CAD03009.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139074|gb|AAO70642.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56129375|gb|AAV78881.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194404458|gb|ACF64680.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407494|gb|ACF67713.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458551|gb|EDX47390.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711976|gb|ACF91197.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633180|gb|EDX51594.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095524|emb|CAR61089.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197211317|gb|ACH48714.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240479|gb|EDY23099.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289042|gb|EDY28413.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937016|gb|ACH74349.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604705|gb|EDZ03250.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204322582|gb|EDZ07779.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205323364|gb|EDZ11203.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331169|gb|EDZ17933.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333781|gb|EDZ20545.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337837|gb|EDZ24601.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343562|gb|EDZ30326.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348552|gb|EDZ35183.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710239|emb|CAR34596.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261248307|emb|CBG26144.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|301159731|emb|CBW19250.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914202|dbj|BAJ38176.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087628|emb|CBY97392.1| Transcriptional regulatory protein qseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225855|gb|EFX50909.1| Two-component system response regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322613580|gb|EFY10521.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621172|gb|EFY18030.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624235|gb|EFY21069.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628027|gb|EFY24816.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633144|gb|EFY29886.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636278|gb|EFY32986.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643531|gb|EFY40092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647452|gb|EFY43941.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648637|gb|EFY45084.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653689|gb|EFY50015.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657797|gb|EFY54065.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663898|gb|EFY60097.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669089|gb|EFY65240.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672916|gb|EFY69023.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678093|gb|EFY74156.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681269|gb|EFY77302.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687800|gb|EFY83767.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323131537|gb|ADX18967.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323195612|gb|EFZ80789.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199706|gb|EFZ84796.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202545|gb|EFZ87585.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207966|gb|EFZ92912.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212482|gb|EFZ97299.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215036|gb|EFZ99784.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222766|gb|EGA07131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224152|gb|EGA08445.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230476|gb|EGA14594.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235172|gb|EGA19258.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239212|gb|EGA23262.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244430|gb|EGA28436.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247046|gb|EGA31012.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253472|gb|EGA37301.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256222|gb|EGA39958.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262603|gb|EGA46159.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267302|gb|EGA50786.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269295|gb|EGA52750.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326624931|gb|EGE31276.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|332990043|gb|AEF09026.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 219

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R      Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+    KLG + + +   +GY++
Sbjct: 181 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 216


>gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 27/207 (13%)

Query: 18  LFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV------LELPRI---- 66
           L  DD   +    S+  E E L++   ED  AIEA  + + +K       + +P +    
Sbjct: 6   LIVDDDKEIRNLISVYLENEGLKTQKAED--AIEALKLLEEKKFDLIILDIMMPNMDGIE 63

Query: 67  ----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
               IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K  
Sbjct: 64  ACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKY 123

Query: 121 ---VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                NN++  E G + V +D R   V+G    L  +E  IL+ L  N+G  ++  +I+ 
Sbjct: 124 NTHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIYE 183

Query: 176 AIY-GLFDEAVEENVVESHISKLRKKL 201
           A++   F ++  +N V  HI+K+R K+
Sbjct: 184 AVWKDAFYKS--DNTVMVHITKIRDKI 208


>gi|312130796|ref|YP_003998136.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311907342|gb|ADQ17783.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 10/155 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ ++ +  L+  +  FD G DD + KP   RE++ RV ++ +R      R     +
Sbjct: 72  ETPVLLLTAFGELEDKVKGFDLGADDYLTKPFFMRELVLRVQSLTKRKLSGMGRKN---V 128

Query: 132 RVFSD-----GRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            VF D     GR   E QG+   L  RE +IL  L    G+ V+K ++   I+G   E V
Sbjct: 129 LVFEDIRVDLGRKTVERQGKEIILTPREFQILVRLCQTPGELVSKAELIEEIWGTTLE-V 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             N +E +I+ LR KL        + +K   GY +
Sbjct: 188 NTNTIEVYINFLRNKLDKPFHKQSIKTKVGYGYYL 222


>gi|293375352|ref|ZP_06621634.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292646108|gb|EFF64136.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 224

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 17/163 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + I  H Q+P++ IS        L  F  G DD + KP   +E+  RV A   RLK 
Sbjct: 65  QLIKEIHQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFSAKEVAFRVKA---RLKT 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    + G I + +DG   +   E   L  +E ++L YL+ +  K V+K QI   ++G  
Sbjct: 122 TTKTIQFGNITI-TDGIVSK-NNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWG-- 177

Query: 182 DEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGY 218
           ++  E +N +  HI +LRKK+      DP   K       LGY
Sbjct: 178 EDYFEFDNTISVHIRRLRKKIE----VDPSKPKHITTIIGLGY 216


>gi|222107038|ref|YP_002547829.1| two component response regulator [Agrobacterium vitis S4]
 gi|221738217|gb|ACM39113.1| two component response regulator [Agrobacterium vitis S4]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +E+ R +RA H +V ++ ++   + +  +   D G DD + KP    E  ARV  + RR 
Sbjct: 60  IEVLRCVRARHDKVAILILTARGTPEDKVKGLDLGADDYMIKPFDIGEFEARVRMLLRRQ 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + ++    G + +  + R     G    +P RE  +LE L    GK VAK  I  ++ 
Sbjct: 120 AGLRSSMVSYGAVSLDLNSRSFSAAGVPLDIPARELGLLEVLFMRAGKVVAKEAIIQSLA 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             FD+ +  N +E + S+LRK+L    G   V + R +GY ++
Sbjct: 180 A-FDDDLSANAIEQYASRLRKRLAPH-GL-TVRTARGIGYYLE 219


>gi|167918857|ref|ZP_02505948.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
          Length = 241

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 3/137 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-- 125
           + +S +P++ +++       +   ++G DD V KP   +E +ARV A+YRR   +     
Sbjct: 72  KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLFE 131

Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E GP R+ +  +      E   L  +E  I+E L  N G+ V++ ++   ++G   + 
Sbjct: 132 LIEIGPYRIQTSEKVVYFHREAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 191

Query: 185 VEENVVESHISKLRKKL 201
                +++HI ++R+KL
Sbjct: 192 AAFRTLDTHIYRIRRKL 208


>gi|153940516|ref|YP_001389608.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936412|gb|ABS41910.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295317702|gb|ADF98079.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 227

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 21/208 (10%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP--------RIIRAHSQVPLIG 77
            N  EFE    +  ++    IE FL  K + VL    LP        + IR  S+ P+I 
Sbjct: 24  LNKWEFE---VNVCKDFEKVIECFLKYKPDVVLMDINLPVCDGFYWCKKIRQISKTPIIF 80

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR----AETGPIRV 133
           +S   S    +   ++G DD + KP +   ++A++ AI RR     N      +   + +
Sbjct: 81  VSSRDSNMEIVMAINNGGDDFIQKPFNSEVLIAKLQAIIRRTYEYKNEEAKVLKCDDLLL 140

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D        +   L + E  +L+ LM N+GK V+++++   ++   D  V EN +  +
Sbjct: 141 NLDNATLLYNEKSLELTKNEMLLLKTLMENKGKGVSRSKLMKKLWD-DDIYVNENTLTVN 199

Query: 194 ISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           I++LR +L  K G  D + +K+ +GY I
Sbjct: 200 INRLRNRLE-KFGIKDLIVTKKGIGYII 226


>gi|159035892|ref|YP_001535145.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914727|gb|ABV96154.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 237

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 8/154 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPI 131
           VP++ ++   +++  +    +G DD V+KP    E++ R+ AI RR +V     A++G +
Sbjct: 78  VPVLFLTARSAVEDRISGLTAGADDYVSKPFSLEEVVLRIRAILRRSQVEPYPGADSGVL 137

Query: 132 R-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           R     +  D  +      V  L   E ++L YLM N G+ V+K QI   ++  +D   +
Sbjct: 138 RYADLQLDEDAHEVRRADRVIDLSPTEFKLLRYLMVNAGRVVSKAQILDRVWN-YDFGGD 196

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +VES++  LRKK+ ++     + + R +GY++
Sbjct: 197 GRIVESYVYYLRKKVDSR-APALIHTIRGVGYTL 229


>gi|330817142|ref|YP_004360847.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
 gi|327369535|gb|AEA60891.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
          Length = 341

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGP 130
            VP++ ++   + Q+  +   +G DD + +P+   E+ +R+  A  R    SN+RA+ G 
Sbjct: 73  HVPIVAMTARDTCQSAAEALKAGADDYLVRPMREAEVQSRIMTAAMRYASDSNDRADFGA 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
            R+ +      + GE   L R+E  +  Y   +  + ++   + + I+ L  + ++   V
Sbjct: 133 YRLDTKTAKIRLHGESVNLTRKEFELAAYFFRHPDQLISHETLLNRIWKLQSD-IDTRTV 191

Query: 191 ESHISKLRKKLR 202
            +H+S++RKKL+
Sbjct: 192 ATHVSRIRKKLQ 203


>gi|299068908|emb|CBJ40149.1| Putative DNA-binding response regulator in two-component regulatory
           system with BasS (basR) [Ralstonia solanacearum CMR15]
          Length = 216

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 14/203 (6%)

Query: 28  GFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           G+N+      ++ ++W+ S++ + +        G+G   LE  R   A S VP+I  S  
Sbjct: 20  GYNTTWVRRLMDAQKWMTSNSFDAIVLDLGLPDGEGHLFLEELRA--AQSDVPVIIASAR 77

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140
            +L   L   D G DD + KP    E++AR+ A+ RR    S NR   G + V    +  
Sbjct: 78  DALSERLKGLDEGADDFLVKPFPVDELIARLRAVLRRHAGQSTNRWNVGSLVVEPSQKRV 137

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
              G V  L  RE ++L  L+    + V +  +  A+Y   +  V  N +E  I      
Sbjct: 138 TQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREGNR-VSANALEVVI----HH 192

Query: 201 LRNKLGFDPVDSKRFLGYSIDWN 223
           LR KLG   + + R +GY I  N
Sbjct: 193 LRGKLGEGVIQTIRGVGYMIGGN 215


>gi|291543637|emb|CBL16746.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 236

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 14/224 (6%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           + DD   ++D   +    DG  +  F + +       +A  D+  ++  +   G   L +
Sbjct: 7   IADDEKNIRDLIKSFLESDGYRVWAFETGDALMGAFQAAPADLVILDIMM--PGTDGLTI 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            + +RA + VP+I ++   S    +     G DD + KP     +L RV ++ RR+++++
Sbjct: 65  CQQLRAKTDVPIIMLTAKDSEYDYVQGITIGSDDYLTKPFRPTTLLMRVRSLLRRMEMNS 124

Query: 124 NRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            R            G +   ++       G+     + E R+L Y+M   GK  A+ ++ 
Sbjct: 125 RRPVQPEEPDDLVVGDLTFSAEANTISCNGKGIGFTQTELRMLSYMMQKPGKAYARDKLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I+G ++  VE  V +  + ++R+KL   L    V  +   GY
Sbjct: 185 ETIWG-YETEVETRVTDETLRRIRRKL--SLAGSSVCVQTIWGY 225


>gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 224

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 4/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR   Q P+I ++        +   + G DD + KP   +E++ARV A+ RR  +
Sbjct: 62  EILKWIRREHQTPVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVLRRTII 121

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++   E      + +  D      + E   +P +E  ++ +L +N+ K   + Q+   ++
Sbjct: 122 TDKVKEKIIFQGLVIDMDSYTIYYKDEEMRMPPKEFELIYFLASNKNKVFTREQLLCEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
           G +D   +   V+ HI +LR+KL++
Sbjct: 182 G-YDYPGDSRTVDVHIKRLREKLQD 205


>gi|238794125|ref|ZP_04637741.1| Transcriptional regulatory protein tctD [Yersinia intermedia ATCC
           29909]
 gi|238726523|gb|EEQ18061.1| Transcriptional regulatory protein tctD [Yersinia intermedia ATCC
           29909]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 13/166 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +    +P++ ++    +   +   + G DD + KP    E+ AR+ A+ RR    
Sbjct: 60  LARLRKRGQTLPVLLLTARTEVADRVKGLNLGADDYLTKPFEMDELEARIRALLRR---- 115

Query: 123 NNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   TG +  F D    +     +  +   L  RE  +L  LM  RG+ VAK Q+F  I
Sbjct: 116 -SVGGTGQVVQFGDLTYHDEGYFLLADKPLALTPRESAVLTSLMHRRGRPVAKQQLFEQI 174

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + L D+A  E+ +E ++ ++RKKL        + + R LGYS++  
Sbjct: 175 FTLSDDANPES-IELYVHRVRKKLHGS--NVSIQTLRGLGYSLECT 217


>gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016]
 gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151
           G DD + KP   RE+LARV AI RR  +K  +     G I +  D  +    GE   L  
Sbjct: 108 GADDYITKPFSVRELLARVKAILRRTAIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTL 167

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-- 209
           +E  +L+ L+ N+G+ + +  +   I+G ++   E   V+ HI  +R+K+ +     P  
Sbjct: 168 KEFELLQMLIKNKGRVMTRDFLLDKIWG-YEYVGETRTVDVHIRHIRQKIES-CDKKPKY 225

Query: 210 VDSKRFLGYSIDWN 223
           +++ R +GY  +W 
Sbjct: 226 IETIRGIGYRFNWK 239


>gi|254481325|ref|ZP_05094570.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214038488|gb|EEB79150.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 231

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 13/183 (7%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           DV  ++  L G+ G ++++  R I   ++ P + +S    +   +    SG DD + KP 
Sbjct: 50  DVWVVDRMLPGRDGLQLIQDLREI--GNETPALVLSALGEVDDRVKGLRSGADDYLVKPF 107

Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILE 158
              E+LAR+ A+ RR    NN+  T  ++V     D   Q     G    L  RE ++LE
Sbjct: 108 AMDELLARLQALSRR--GVNNQDGTTRLQVQDLVMDLLKQNVSRRGLAVLLQPREYKLLE 165

Query: 159 YLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           YLM + G+ V +T +   ++G  FD   + NV++ H+S+LR+K+        + + R  G
Sbjct: 166 YLMRHAGQVVTRTMLLEHVWGYNFDP--QTNVIDVHVSRLRQKIDKDFDTSLLLTVRGAG 223

Query: 218 YSI 220
           Y +
Sbjct: 224 YRL 226


>gi|169826434|ref|YP_001696592.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990922|gb|ACA38462.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 230

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 11/143 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA   +P+I +S        +     G DD V KP H  E+LARV +  RR       +
Sbjct: 69  IRAERNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQLGTYS 128

Query: 127 ETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E G  +V  DG       ++  ++GE   L   E +I E LM N G+  +  +I+  ++ 
Sbjct: 129 E-GATKVEIDGLILDEDAKEIILEGEPVRLTPIEYKITELLMKNAGRVFSIREIYERVWN 187

Query: 180 LFDEAVE-ENVVESHISKLRKKL 201
             +EA   EN+V  HI K+R+K+
Sbjct: 188 --EEAYNAENIVAVHIRKIREKI 208


>gi|119503823|ref|ZP_01625905.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
 gi|119460331|gb|EAW41424.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
          Length = 234

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 23  GVSLEGFNSLEFEE-----WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLI 76
            +  EGF  LE  +     WL +    D+  ++  L G  G ++L   +   A   +P+I
Sbjct: 20  ALETEGFEVLEAADTQKAYWLITDQDPDLVLLDWMLPGGSGIELLSRLKKEEATQSLPVI 79

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVF 134
            ++     +  +   D G  D + KP   +E+LAR+  I+R  +    N++   G + + 
Sbjct: 80  MVTAKAREEDIIQGLDMGAHDYITKPFSLKELLARIRTIFRHTEDDDVNHQLRVGDLVLE 139

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D R   +  +V  L   E ++L++ M +  +  A+ QI   I+G  +  V+   V+  I
Sbjct: 140 LDNRRVTLGSQVLMLGPTEFKLLQFFMLHPERAHARKQILQHIWG-NNACVDARTVDVSI 198

Query: 195 SKLRKKLRN 203
            +LRK L++
Sbjct: 199 RRLRKTLQS 207


>gi|332798919|ref|YP_004460418.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696654|gb|AEE91111.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 232

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 6/140 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ ++        +     G DD + KP    E++AR+ ++ RR    N   
Sbjct: 70  IRKGSMVPILMLTAKGDEIDKVTGLRLGADDYLTKPFSINELMARIESLIRRYTTFNQST 129

Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +   + + +     + R   V GE   L  +E  +L +L +N+G+   K QI++ ++   
Sbjct: 130 QLDILNLKNMVIDKENRTVCVNGESVNLTGKEFDLLVFLASNKGRVFTKKQIYTQVWE-G 188

Query: 182 DEAVEENVVESHISKLRKKL 201
           + A ++N + S ISKLRKK+
Sbjct: 189 EYAFDDNNIMSFISKLRKKI 208


>gi|320547243|ref|ZP_08041536.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320448131|gb|EFW88881.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 231

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 9/154 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++  ++R  S VP+I ++   S    +  F +G DD   KP    ++  RV AI 
Sbjct: 57  GTNGIDIAGLLRKRSDVPIILLTARDSDDDFVKGFSAGADDYFTKPFSPLKLSLRVKAIL 116

Query: 117 RRLKVS---NNRAETGPIR----VFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            R  ++   +N+  +  +     V SD  R    QG+   L   E  +L+ LM++  + V
Sbjct: 117 ARTPMTQEHSNKDSSDSLSYDELVLSDKERSATYQGKNIKLTNTEFELLKVLMSHSEEAV 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           ++ ++   ++G +D  VE  V +  I +LRKKLR
Sbjct: 177 SRDELLRQVWG-YDSEVETRVTDDTIKRLRKKLR 209


>gi|317493676|ref|ZP_07952097.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918619|gb|EFV39957.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 220

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G S++ F   E ++ L +       A+   L   G   L+
Sbjct: 4   LLIEDDKLIGDGIKAGLIKMGFSVDWFT--EGKQGLNALDSAPYDAVVLDLSLPGMDGLD 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R  R +    P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  ILRKWRQNGHDEPVLILTARDALEQRVAGLQQGADDYLCKPFALIEVAARLQALIRRRHG 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 T GP+ +         +GE   L  +E  +LE L+ N G+ + +  I   IY  
Sbjct: 122 QVQTTLTHGPVSLDPINLTVTHEGEAIYLKPKEFALLELLLRNEGRVLPRPLIEEKIYN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D+ V  N +E HI  LRK    K G   + +   +GY++
Sbjct: 181 WDDDVSSNAIEVHIHHLRK----KFGSSFIRTVHGIGYTL 216


>gi|313889059|ref|ZP_07822717.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844932|gb|EFR32335.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 230

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------K 120
           +R  + +P+I +S    +   +   + G DD + KP +  E+ ARV ++ RR        
Sbjct: 68  MREKTNIPIIVLSAKGEVTDKIVGLNVGADDYITKPFNAVELTARVNSLIRRYFSLGASD 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     + G + +F D ++  V+ E+  L   E +IL  L  N G+  +  +I+  ++  
Sbjct: 128 IKTGDLKIGRVSIFDDSKEVRVEDELANLTPYEYKILYLLAKNPGRVFSSNEIYERVWE- 186

Query: 181 FDEAVE-ENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +EA++   ++  HIS LR K+  N    D + S   +GY I+
Sbjct: 187 -EEAIDVRKIISVHISHLRDKIEINPRKPDLIKSVYGMGYKIE 228


>gi|300867627|ref|ZP_07112275.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
 gi|300334388|emb|CBN57445.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
          Length = 413

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 6/164 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L R +R+ H+  P++ ++   S  + ++  D+G DD V KP    E+ AR+ AI RR 
Sbjct: 60  ISLCRQLRSRHTTTPILLLTSCDSSASKIEGLDAGADDYVVKPFDFLELSARIRAILRRG 119

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +     ETG +R+  +  +     +   L  +E  +LE  + N  +  ++  I   ++
Sbjct: 120 SAALPPILETGKLRLNPNNYEVIYNSQPLNLTPKEYALLELFLRNTQRVFSRRAILDHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
             F+E   E+ V +HI  LR KL+   G  P  V++   LGY +
Sbjct: 180 S-FEEPPAEDTVRAHIKGLRSKLKAA-GAPPDLVETVYGLGYRL 221


>gi|237799166|ref|ZP_04587627.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022021|gb|EGI02078.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 220

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 24/218 (11%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL  +GY   + +DG+S    ++L  E +        +  ++ F         +L R +R
Sbjct: 19  ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           A    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR   S  RA 
Sbjct: 68  AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   I +    +     G   P+   E ++L  LM   GK V + ++   +YG + E
Sbjct: 125 PLLEHAGISLDPASQQVSFHGCEVPMTPMEYQLLHQLMIRPGKVVTRERLSDTLYG-WQE 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE N +E  I  LRKKL  +L    + + R +GY ++
Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217


>gi|227536801|ref|ZP_03966850.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243357|gb|EEI93372.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 224

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 4/151 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  VL+  +      Q  +I IS   +L   +     G DD + KP H  E++AR+ A
Sbjct: 57  GNGMHVLQTLK--EQEKQDGVIIISAKDALDDKIKGLQIGADDYLTKPFHLSELVARIYA 114

Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR +  N N      +++    +   V   V P  ++E  +L Y + N+ K ++K+ +
Sbjct: 115 VIRRKQFQNSNIIIQNELQIDLLAKTVSVGDHVVPFTKKELDLLLYFIGNKNKVISKSTL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
              + G + D     + V +HI  L+KKL++
Sbjct: 175 AEHLSGDVADMLDNHDFVYAHIKNLKKKLQD 205


>gi|225388695|ref|ZP_03758419.1| hypothetical protein CLOSTASPAR_02431 [Clostridium asparagiforme
           DSM 15981]
 gi|225045293|gb|EEG55539.1| hypothetical protein CLOSTASPAR_02431 [Clostridium asparagiforme
           DSM 15981]
          Length = 230

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 17/175 (9%)

Query: 40  SSAREDVSAIEA------FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS 93
           + ARE +S  E        L+  G  V +  R IR  +  P++ ++    ++  L+   +
Sbjct: 38  AEAREHLSRCEPDAIILDILLPDGSGV-DFCREIRECTAAPILFLTSVAGVEKALEGIRA 96

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN-----NRAETGPIRVFSDGRDPEVQGEVFP 148
           G DD +NKP H   +LAR+ A +RR ++       +    GP+          + G    
Sbjct: 97  GGDDYLNKPFHIELLLARIEAFWRRDEIMKRMKPADTFTCGPLTFQMTACTACLDGADLM 156

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN--VVESHISKLRKKL 201
           L  +E  +L  L  N GK V+K  IF  I+G   + +  N   + + +++L++KL
Sbjct: 157 LTVKEFSVLLLLAQNEGKMVSKETIFETIWG---QPLNGNSQALYAMVARLKRKL 208


>gi|224438071|ref|ZP_03659010.1| phosphate regulon transcriptinal regulatory protein PhoB, putative
           [Helicobacter cinaedi CCUG 18818]
 gi|313144515|ref|ZP_07806708.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129546|gb|EFR47163.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 222

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 107/229 (46%), Gaps = 15/229 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLE--GFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           +F+L DD  ++    + L+  +  +L+  GF SL  E W ++ A+E  S +   ++   E
Sbjct: 2   IFILEDDEGILS---LVLYALNSANLKAKGF-SLPSEFW-EAMAKESPSCVVLDVMLPQE 56

Query: 59  KVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
             L +   +R + +   +P+I ++   S    +   DSG DD + KP    E++AR+ A+
Sbjct: 57  DGLSVLHKMRQNHKSKNIPVIMLTALGSEFDKIKGLDSGADDYLTKPFSALELIARIKAL 116

Query: 116 YRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR    N+     G ++         + GE   L  +E  +L  LM++  +  ++ ++ 
Sbjct: 117 LRRSHTQNDCEMSYGDLKYSKTIHSVSIGGESLHLTLKEFELLGLLMSSTNRVFSREELL 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             I+G          ++ HI+ LR KL  K G   + + R +GY  + N
Sbjct: 177 EIIWGYNISGTR--TIDIHINTLRSKL-GKYG-KHIKTIRGVGYQFNTN 221


>gi|218133944|ref|ZP_03462748.1| hypothetical protein BACPEC_01833 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991319|gb|EEC57325.1| hypothetical protein BACPEC_01833 [Bacteroides pectinophilus ATCC
           43243]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 28/210 (13%)

Query: 33  EFEEWLQSSAREDVS------AIEAFLIGKGEKVL---ELPRI--------IRAHSQVPL 75
           E +E L +S  E V+      A E  L  + + VL    +P I        +R  S+VP+
Sbjct: 16  ELKELLDNSGYEAVALENFDNACEGILAAEADLVLLDINIPHINGELLLKQLRTRSEVPV 75

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135
           I ++   S    +     G DD V KP +   +L R+ AI++RL  S+     G I VF 
Sbjct: 76  IMVTSRDSEADEVLSMSYGADDYVTKPYNPTILLLRINAIFKRL--SSRHGSDGTI-VFR 132

Query: 136 DGRDPEVQGEV-------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           D +    +G +         L + E  I  YL++N+ + V++ ++ + ++    E + +N
Sbjct: 133 DMQILPQKGVIRYNSGSEILLTKNEMTIFMYLLSNKDRIVSRDELMTELWN-NQEYLNDN 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +  +IS+LR   +     D +++++  GY
Sbjct: 192 ALTVNISRLRAHFKEAGLEDVIETRKGQGY 221


>gi|330897339|gb|EGH28758.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 220

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 13/166 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R +RA +  +P++ ++        +   D+G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LDLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR- 118

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S  RA    E   I +    +    +G   P+   E ++L  LM   GK V + ++ +
Sbjct: 119 --SQGRAQPLLEHAGISLDPASQQVSFKGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +YG + + VE N +E  I  LRKKL  +L    + + R +GY ++
Sbjct: 177 TLYG-WQDKVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217


>gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 9/207 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++   + + EE ++ +  +    I   L+      LE
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDC--AYDGEEAVEKAKDKKYDIILLDLMLPKMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIREFSNVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAGSD 123

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   E       G +R+  +GR   + G+   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 HEEKEKAKSIQVGDLRMDCEGRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           ++G ++   +   V+ HI +LR+K+  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIET 209


>gi|224543644|ref|ZP_03684183.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523417|gb|EEF92522.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM
           15897]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +I + ++ +P++ +S        +   DSG DD + KP    E+ ARV ++ RR +  
Sbjct: 65  IKQIRKTNTTLPILILSAKDREIDKVRGLDSGCDDYMTKPFGVLELAARVRSLLRRSQHH 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +   +T  + +         QGE   L  +E ++L YL+ N+ + V + ++ + I+G +D
Sbjct: 125 SKVIKTTSLEIDKSKHIILKQGEKLELTHKEYQLLLYLVENKERVVEREELLNNIWG-YD 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              E   ++ HI  LR KL +  G   + + R +GY
Sbjct: 184 FVGESRALDVHIRSLRAKLGDD-GHHYIKTIRSVGY 218


>gi|209548528|ref|YP_002280445.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534284|gb|ACI54219.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 248

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 5/156 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R     P++ +S    +   +    +G DD + KP    E+LARV  + RR    +    
Sbjct: 91  RKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPDQDVV 150

Query: 128 TGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
                +  D    EV+  G+  PL  RE R+LEYLM N G+ V +T +   ++   FD  
Sbjct: 151 YRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 209

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + NV++ H+S+LR K+        + + R  GY I
Sbjct: 210 -QTNVIDVHVSRLRSKIEKDYSQPLLKTIRGAGYMI 244


>gi|167751513|ref|ZP_02423640.1| hypothetical protein EUBSIR_02514 [Eubacterium siraeum DSM 15702]
 gi|167655321|gb|EDR99450.1| hypothetical protein EUBSIR_02514 [Eubacterium siraeum DSM 15702]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETG 129
              P++ ++   +    +  F +G DD + KP+   E+L R++A+ RR  ++N ++   G
Sbjct: 72  CNTPVLMVTARETSADKIAGFRAGTDDYMVKPVDDEEMLLRISALLRRSNIANEHKLHAG 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
              +  D       G    LP +E  +L  L++ + K   + Q+   ++ +  E  +E  
Sbjct: 132 NTVLDYDALTVTCGGVTHELPNKEFMLLFKLLSYQNKIFTRRQLMDELWDMETET-DERT 190

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ HI++LR++ R+   F+ V + R LGY
Sbjct: 191 IDVHINRLRERFRDNEDFEIV-TVRGLGY 218


>gi|145631584|ref|ZP_01787350.1| transcriptional regulatory protein [Haemophilus influenzae R3021]
 gi|144982784|gb|EDJ90310.1| transcriptional regulatory protein [Haemophilus influenzae R3021]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAET 128
           H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A I RR    ++  E 
Sbjct: 70  HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGYHHSVIEQ 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             +++  + R   +  +   L  RE ++LE LM N+ + ++++ I   +   +DE +   
Sbjct: 130 AGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKLSS-WDEEISSG 188

Query: 189 VVESHISKLRKKL 201
            ++ HI  LR+KL
Sbjct: 189 ALDVHIYNLRQKL 201


>gi|134099376|ref|YP_001105037.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009928|ref|ZP_06567901.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911999|emb|CAM02112.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 220

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 16/167 (9%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R     P++ ++     +  +   + G DD V KP    E++AR+ A+ RR   
Sbjct: 60  DLCRRMRQRYDRPILVVTARTDTRARIHGLNLGADDYVVKPYDVGELIARIHAVARR--- 116

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S  R ET       GPI V  D R+  V G    L R+E  +L  L    G   ++ QI 
Sbjct: 117 SAPRGETATPTRHAGPISVDVDSREATVDGRPVQLTRKEFDLLAMLARQPGVVFSRGQIL 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           S ++    +   +  +E H++     LR KLG  D V + R +GY +
Sbjct: 177 SEVWSTHWQG-SQRTLEVHVA----SLRTKLGLPDAVQTVRGVGYRL 218


>gi|114766934|ref|ZP_01445854.1| DNA-binding response regulator CtrA [Pelagibaca bermudensis
           HTCC2601]
 gi|114540841|gb|EAU43903.1| DNA-binding response regulator CtrA [Roseovarius sp. HTCC2601]
          Length = 179

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL   R+ R     P++ +S      + +  F  G DD + KP H  E++AR+ AI 
Sbjct: 59  GHEVLRQLRMARI--STPILILSGADDTDSKIKGFGFGADDYLTKPFHRDELVARIHAII 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR K  S +   TG I V  D +  EV G+   L  +E ++LE L   +G  + K     
Sbjct: 117 RRSKGHSQSVIRTGKISVNLDAKTVEVGGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLK 176

Query: 176 AIY 178
            +Y
Sbjct: 177 HLY 179


>gi|83643472|ref|YP_431907.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631515|gb|ABC27482.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 7/165 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + R++RA  S+ P++ +S    +   +    +G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LSVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRS 119

Query: 120 KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +   T     + +    R  +  G    L  RE R+LEY M N G+ + +T +   
Sbjct: 120 QQQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEK 179

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   FD   + NV++ HIS+LR K+        + + R  GY +
Sbjct: 180 VWDYHFDP--QTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVL 222


>gi|53725462|ref|YP_102584.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|67641947|ref|ZP_00440711.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|121601090|ref|YP_992691.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124386179|ref|YP_001026513.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126438503|ref|YP_001058604.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126448789|ref|YP_001080208.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134282711|ref|ZP_01769414.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167002007|ref|ZP_02267797.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|167720019|ref|ZP_02403255.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167739029|ref|ZP_02411803.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167816242|ref|ZP_02447922.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167824621|ref|ZP_02456092.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167894727|ref|ZP_02482129.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167903130|ref|ZP_02490335.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167911365|ref|ZP_02498456.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167919386|ref|ZP_02506477.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217423692|ref|ZP_03455193.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|226196289|ref|ZP_03791872.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237811863|ref|YP_002896314.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|254180143|ref|ZP_04886742.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254188446|ref|ZP_04894957.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254261289|ref|ZP_04952343.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254297977|ref|ZP_04965430.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|52428885|gb|AAU49478.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121229900|gb|ABM52418.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124294199|gb|ABN03468.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126217996|gb|ABN81502.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126241659|gb|ABO04752.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134245797|gb|EBA45888.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|157807220|gb|EDO84390.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157936125|gb|EDO91795.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|184210683|gb|EDU07726.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217393550|gb|EEC33571.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|225931687|gb|EEH27691.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237503183|gb|ACQ95501.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|238522974|gb|EEP86415.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|243062252|gb|EES44438.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254219978|gb|EET09362.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 231

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAE 127
           + +P++ +++       ++  ++G DD + KP   RE +ARV A+ RR  +S       E
Sbjct: 72  APLPILVLTNAVLETDLVEALEAGADDYLIKPPREREFVARVNALRRRASISKQFEGTIE 131

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G  R+ +  R   + GE  PL  +E  I+E L  + G+ V +  I S ++G   E    
Sbjct: 132 IGGYRIATVERAVYLAGERIPLSPKEYEIVELLARHVGQVVPRKTIISRVWGRAAEEEVS 191

Query: 188 NVVESHISKLRKKL 201
             +++HI ++R+K+
Sbjct: 192 RSLDTHIYRIRRKM 205


>gi|332885785|gb|EGK06031.1| hypothetical protein HMPREF9456_02295 [Dysgonomonas mossii DSM
           22836]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 11/154 (7%)

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL + IRA H ++P+I ++   +    LD FDSG DD + KP   RE+ AR++ + +R  
Sbjct: 62  ELCKEIRAVHPEIPIIMLTALGTTDDKLDGFDSGADDYMVKPFDLRELNARISILLKRKN 121

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V  +  E   I++  D +          L  +E  +L+Y+M N  + +++T+I  
Sbjct: 122 GVSATVKTDHLEYADIKLNLDNKTVTRGDREMRLTPKEFNLLQYMMLNPERVLSRTEISE 181

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
            ++   F+     N ++ +I+ LR K+    GFD
Sbjct: 182 KVWDTHFNTGT--NFIDVYINYLRVKIDK--GFD 211


>gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 235

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 20/231 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIG- 55
            +++DD A ++   + LF    +   GF   E E+  ++     + R D+  ++  L G 
Sbjct: 3   ILVVDDEAPMR-ALLRLF----LEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGI 57

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G  V    RI+R  S VP+I ++    ++  +   ++G DD + KP    E+LAR+ A+
Sbjct: 58  DGWAVC---RILRRESDVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAV 114

Query: 116 YRRL-KVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            RR  KV     +R   GP+ +    R+    G    L  +E  +L  L  + G+ + + 
Sbjct: 115 LRRTPKVEGRPADRVIVGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRA 174

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +I   ++G +D   +   V++H+  LR KL         +++ R +GY ++
Sbjct: 175 RIIERVWG-WDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLN 224


>gi|309778273|ref|ZP_07673202.1| DNA-binding response regulator DltR [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308913961|gb|EFP59772.1| DNA-binding response regulator DltR [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124
           R    +P++ I+   +L   ++  D G DD + KP H +E+LARV A+ RR   +++S +
Sbjct: 70  RKGISIPILIITAMSTLDNRVEGLDGGADDYLVKPFHIKELLARVRALTRRPANIQLS-S 128

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           + + G +    D R          L  +E  +    M N     ++ Q+   I+G   E 
Sbjct: 129 KLQYGDLTFDKDSRTLSTPNNSLLLTSKETELTFVFMQNPETLFSREQLILKIWGSSSE- 187

Query: 185 VEENVVESHISKLRKKLR 202
           VE   V+S+IS LRK+L+
Sbjct: 188 VETGNVDSYISFLRKRLK 205


>gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 233

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR K 
Sbjct: 65  QVCREIRTKSQVPIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLRRYKP 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQ-----------GEVFPLPRRERRILEYLMANRGKRVAK 170
                +    +V    R P+++           GE   +P +E  +L +L A+      +
Sbjct: 125 QVQEIQESDDKVV---RYPDLEINMTNYSVKYMGERVDMPPKELELLYFLAASPNHVFTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            Q+   I+G ++   +   V+ HI +LR+KL +
Sbjct: 182 EQLLDQIWG-YEYIGDTRTVDVHIKRLREKLSD 213


>gi|302873353|ref|YP_003841986.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688477|ref|ZP_07630923.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576210|gb|ADL50222.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 214

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 14/142 (9%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           I++    +P++ ++   SLQ  L    SG +D + KP    E++ARV  I RR    NN+
Sbjct: 63  IVKHIKAIPVMFVTAKDSLQDKLQGLSSGAEDYLVKPFEILELIARVNIILRR----NNK 118

Query: 126 AE---TGPIRVFSDGRD---PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +    G +RV    R     +++ E+ P   +E  +LE L+ NR   +++ ++    +G
Sbjct: 119 NDDFILGLVRVNFKCRKVFFNDIEIEMTP---QEYMLLEVLITNRNIAMSREKLLELAWG 175

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            FD   +   V+ HI KLRKKL
Sbjct: 176 -FDYEGDTRTVDVHIQKLRKKL 196


>gi|291087739|ref|ZP_06572087.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1]
 gi|291074166|gb|EFE11530.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1]
          Length = 236

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 6/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +         D G   +G   L  E   ++   +  + I + ++  G    E
Sbjct: 18  LVVDDDIKLTQSVCTCLNDSGYEAKG--CLSAEAAYEAMYSKMYNLIISDIMMPGTDGFE 75

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
               +R  +  +P++ IS    L +    FD G+DD + KPI   E+L RV A+ R   +
Sbjct: 76  FAETVRGLNKTIPILFISARDDLPSKKKGFDLGIDDYMVKPIDFSELLMRVRALLRLANI 135

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +R        + +D R   V G+  P+  RE  IL  L++      +++Q+    +G+
Sbjct: 136 EESRKIVICDTALDADARTIIVGGDEIPVTTREFNILHKLLSYPNHTFSRSQLMDEFWGV 195

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +       V+ +I+KLR K      F+ + + R LGY
Sbjct: 196 -ESDTGLRAVDVYITKLRDKFSACHDFE-IKTVRGLGY 231


>gi|255102164|ref|ZP_05331141.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 27/228 (11%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAI-EAFLIGKGEKVL---ELPRI--- 66
           Y  L  +D + L    +L FE+W  +    +D   + + F+  K + VL    LP     
Sbjct: 2   YRILLVEDDIDLSKEIALAFEKWGFKVELIDDFEVVLDEFIDKKPDVVLLDVNLPLYNGF 61

Query: 67  -----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IRA S VPLI +S   S    +   ++G DD + KP     ++ ++  I RR+  
Sbjct: 62  YWCEKIRAISNVPLIFLSSRDSDMDLIMGINNGADDYITKPFSIEILVTKINGIIRRVY- 120

Query: 122 SNNRAETGPI-----RVFSDGR---DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N +++  I      +F  G+     + + +   L + E +IL  L+ N+ + V++  +
Sbjct: 121 --NYSDSNSILYCEDLMFDVGKGIIKHKYKDKSIELTKNEIKILTLLLKNKNRVVSRESL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              ++   DE V +N +  ++++LR K++ +LGFD  + +K+ +GY I
Sbjct: 179 MMTLWD-NDEFVTDNALTVNMNRLRSKVK-ELGFDDFIKTKKGIGYII 224


>gi|209527274|ref|ZP_03275784.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209492262|gb|EDZ92607.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 246

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 51  AFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
           + LI      L+L R++R H Q VP++ I +  +      + ++G DD + KP   RE +
Sbjct: 71  SLLILDATNGLDLCRMLRHHGQSVPILIIGNKENANNCAFYLEAGADDYLTKPFSIREFI 130

Query: 110 ARVAAIYRRLKVSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
           AR  A+ RR ++       GP+        ++ +     V+GE   L  ++ R+LE  ++
Sbjct: 131 ARCRALIRRQRIGKF---PGPVMLQYKDIILYQEECRVIVRGEEVQLSPKQFRLLELFLS 187

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              +  ++ Q+   I+G  D   +   V+ HI  LR+KL
Sbjct: 188 YPRRVWSREQLLDVIWGT-DFVGDSKTVDVHIRWLREKL 225


>gi|196041826|ref|ZP_03109115.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027320|gb|EDX65938.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDDHLKTVYGVGYRW 220


>gi|319936362|ref|ZP_08010778.1| hypothetical protein HMPREF9488_01611 [Coprobacillus sp. 29_1]
 gi|319808477|gb|EFW05029.1| hypothetical protein HMPREF9488_01611 [Coprobacillus sp. 29_1]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 4/138 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123
           +R  S VP+  +S   +    L  F+ G DD + KPI    + A++ AI  R    K S+
Sbjct: 67  VRQTSDVPIFMMSAKSAKSDKLMGFELGADDYMEKPIDPDILCAKIRAILTRHSKDKQSD 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
               +G IR+   G    ++ ++  L  +E  +L   + N GK + K  +F+ I+G+ D 
Sbjct: 127 QIINSGAIRIDVAGHKVYLKNKLLDLNVKEYALLMLFIENAGKTLHKDYLFNEIWGM-DS 185

Query: 184 AVEENVVESHISKLRKKL 201
             E   +  HI  LR K+
Sbjct: 186 ESENQTLTVHIKMLRSKI 203


>gi|293400068|ref|ZP_06644214.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306468|gb|EFE47711.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 18/221 (8%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA--IEAFLIGKGEKVL---ELPRI---- 66
           +A+  DD + LE  ++   +EW     + DV+   ++       + VL    LP I    
Sbjct: 10  VAIVEDDEIILEELSNC-LKEWNFEVNKIDVAKDILQQLTTVNCDIVLLDVHLPNINGIS 68

Query: 67  ----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
                R  S  P+I IS      + +  ++ G DD + KP     ++A++ A  RR++  
Sbjct: 69  VCRQFRKFSNAPVIFISSDADRMSMVSAYEYGGDDYIVKPFDKMVLIAKLNAFIRRMQQE 128

Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++       V  + R  ++  QG++  + + E +ILE LM+N    ++++ +  A++  
Sbjct: 129 ADKEVLVWRGVELNLRTYQLKYQGKMMEITKNEMKILELLMSNPHVVISRSDMMMALWN- 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            D  V++N +  ++ +LRKKL +    D  + +K+  GY I
Sbjct: 188 SDCYVDDNTLSVNVGRLRKKLEDVFRIDDFIHTKKGTGYYI 228


>gi|289422565|ref|ZP_06424408.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
 gi|289157137|gb|EFD05759.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 58  EKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           E  L + + +RA S+   +P+I ++   S    +   DSG DD V KP    E+++R+ A
Sbjct: 56  EDGLSILKKLRASSKTRNIPIIMLTAKGSEYDKVIGLDSGADDYVTKPFGMMELISRIKA 115

Query: 115 IYRRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + RR  +  ++     G + +  +  +  V  +   L  +E  +L  LM N    + + +
Sbjct: 116 VMRRSSIETDKKCLVIGDVMLDPERHEVRVDQDQVSLTLKEFDLLYLLMKNPNIVMTRDK 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G +D   E   V+ HI  LR+KL   L  D +++ R +GY +
Sbjct: 176 ILETVWG-YDFGGETRTVDVHIRTLRQKL--GLSGDIIETIRGVGYRV 220


>gi|253998963|ref|YP_003051026.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|253985642|gb|ACT50499.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
          Length = 227

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 17/147 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA    P++ ++        +   + G DD V KP   REI+ARV AI RR + S+N
Sbjct: 65  RAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRTQPSDN 124

Query: 125 ----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +   G + ++ + R  E  G V  L   E  +LE L+ + G+ V+K+ +  ++ GL
Sbjct: 125 AQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDL--SLQGL 182

Query: 181 ------FDEAVEENVVESHISKLRKKL 201
                 FD +     ++ H+S +R+K+
Sbjct: 183 GRPLARFDRS-----IDVHLSSIRQKI 204


>gi|269838215|ref|YP_003320443.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787478|gb|ACZ39621.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 236

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 13/152 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S  P++ ++        +   + G DD + KP   RE+LARV A+ RR  
Sbjct: 61  LEVLRRLRQESPTPVLMLTARSEEVDRVVGLELGADDYLTKPFSMRELLARVRALLRRTD 120

Query: 121 V------SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +      ++ +A T  +R      DP      + G+   L   E R+L  LM + G+   
Sbjct: 121 LVRQMLEADRKASTEAVRYGPLALDPVRHIATLDGQELDLTPTEFRLLHLLMRHPGRAFG 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ +   I+G  D+ V E  V++ + +LRKKL
Sbjct: 181 RSYLLDTIWG--DQFVGERSVDNAVLRLRKKL 210


>gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
 gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
          Length = 237

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCKKLRDKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SNN  +      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNNTVQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218


>gi|226315467|ref|YP_002775363.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098417|dbj|BAH46859.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 237

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 13/192 (6%)

Query: 27  EGFNSL----EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           EGF  +      +E L+  A+ +V  I   ++   +   +L   IR  S   +I ++   
Sbjct: 26  EGFRHIYTAGTAQEALRLLAKNEVDIIILDVMLPDQSGFDLCPQIREISSAYIIYLTARA 85

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVF 134
           S    L  F  G DD V KP +  EI+AR  A  RR         + +  R + G   + 
Sbjct: 86  SDLDVLSGFAIGGDDYVTKPFNPLEIVARTKAGLRRGVLMPVQHAEETRRRYDFGGFVLD 145

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
               +  V GE  P P +  ++L YL  N     +K Q++ A++G+ D   ++N V  HI
Sbjct: 146 EYEGELLVGGEAVPCPAQAYQLLLYLCKNPNMVFSKAQLYEAVWGI-DGMGDDNTVMVHI 204

Query: 195 SKLRKKLRNKLG 206
            K+R+++ + LG
Sbjct: 205 HKIRERIESDLG 216


>gi|255283380|ref|ZP_05347935.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
           14469]
 gi|255266028|gb|EET59233.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
           14469]
          Length = 249

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 4/193 (2%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           F+  E  ++L+ +  + V       +  G +VL   R  + H  VP++ ++   S++  +
Sbjct: 50  FDGQEALDYLECTEYDAVILDIMMPVMDGLQVLRKLRQRKEH--VPVLLLTAMDSIEDRV 107

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVF 147
              D+G DD + KP    E+LAR+  + R+   V  N    G + V  D +     G+  
Sbjct: 108 TGLDAGADDYLVKPFAFEELLARLRVMLRKPAAVKTNICTVGDLEVHMDTQQVLRGGKEI 167

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L  +E  IL Y++ N G  +++ ++   I+  +D     NV++ +I  LRKK+ +    
Sbjct: 168 KLSGKEFSILRYMVQNAGIVLSREKLEQHIWN-YDYTGSSNVIDVYIRYLRKKIDDGYEK 226

Query: 208 DPVDSKRFLGYSI 220
             + + R  GY +
Sbjct: 227 KLIHTVRGAGYVL 239


>gi|56460761|ref|YP_156042.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56179771|gb|AAV82493.1| Response regulator (CheY, wHTH domains) [Idiomarina loihiensis
           L2TR]
          Length = 237

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 9/153 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  SQVP++ ++        +   + G +D + KP   RE++AR+  + R L +   
Sbjct: 73  RQLREWSQVPVLVLTARDDELQKVKLLEGGANDYLTKPFGIRELMARIHVLLRDLSIEQP 132

Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            AE     G + +  +     +Q E+  L R+E  +L++L+++  K V + Q+   I+G 
Sbjct: 133 TAEAQLRFGELLIDREQHKVFLQNEIVNLSRKEYALLDFLVSHPQKLVTQQQLLEKIWGQ 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             +  + + +   +S++RKKL++    DP   K
Sbjct: 193 THQE-DTHYLRIFVSQVRKKLKD----DPAQPK 220


>gi|42784015|ref|NP_981262.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739945|gb|AAS43870.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL Y M N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVMVDKTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|26988171|ref|NP_743596.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148549489|ref|YP_001269591.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|24982905|gb|AAN67060.1|AE016334_9 DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148513547|gb|ABQ80407.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
          Length = 224

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +RA S   ++ ++ +  L   +   D G DD + KP    E+LAR+ ++ RR   ++ + 
Sbjct: 66  LRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRR---NDQQL 122

Query: 127 ETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           +   +RV     DP        G+   L  +E  +L  LM   G+ +++TQI S ++ + 
Sbjct: 123 QPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWDMN 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 183 FD--CDTNVVEVSIRRLRAKIDDPFDNKLIHTLRGVGYVLE 221


>gi|325265300|ref|ZP_08132025.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
 gi|324029479|gb|EGB90769.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
          Length = 219

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 5/154 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           IR+    P++ ++      + +    SG DD + KP    E+ ARV A  RR  +   + 
Sbjct: 66  IRSQVDCPILFLTARTDENSIMYGLASGGDDYITKPFGIGELRARVQAHLRRENREKRHT 125

Query: 126 AETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           A    +R    G+  EV GE+  PL + E  I E+L  N G+  +K QI+  I+G +D+ 
Sbjct: 126 ALIEDVRFDLAGKTVEV-GEIRVPLTKSEYEISEFLAMNHGQVFSKEQIYERIFG-YDKD 183

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + + +  H+  +R K  ++ G +P+++   +GY
Sbjct: 184 GDVSAITEHVKNIRAKF-SRAGKEPIETVWGIGY 216


>gi|229089713|ref|ZP_04220974.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693612|gb|EEL47314.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDEARHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220


>gi|226358137|ref|YP_002787876.1| response regulator, OmpR; phosphate regulon transcriptional
           regulatory protein phoB [Deinococcus deserti VCD115]
 gi|226319780|gb|ACO47774.1| putative response regulator, OmpR; putative phosphate regulon
           transcriptional regulatory protein phoB [Deinococcus
           deserti VCD115]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 17/201 (8%)

Query: 27  EGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYP 82
           EG   LE ++  ++ A   R DV+ ++  L G    VL   R  RA    +P++ ++   
Sbjct: 24  EGHEVLEAQDGQEARALLPRADVAVMDWMLPGAAGPVLA--REARAAGLDLPILMLTARG 81

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV 142
             +  L   + GVDD V KP   REI+ARV A+ RR+ V  +   +  + +    R   V
Sbjct: 82  EEEDKLHGLEEGVDDYVVKPFSPREIVARVRALLRRVGVHQD-VRSDSLTMDLKRRTVMV 140

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            G    L R E  +L  L  + G    + ++   ++G  D    E VV+ HI+ LRK   
Sbjct: 141 DGLPVELSRLEFDLLAALALHPGLAWTRERLLERLWG-PDFPGTERVVDVHITALRK--- 196

Query: 203 NKLGFDP-----VDSKRFLGY 218
            KLG DP     +++ R +GY
Sbjct: 197 -KLGDDPERPRYIETVRGVGY 216


>gi|161616164|ref|YP_001590130.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161365528|gb|ABX69296.1| hypothetical protein SPAB_03966 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|267995367|gb|ACY90252.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
          Length = 270

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 54  ILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 113

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R      Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 114 LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 172 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+    KLG + + +   +GY++
Sbjct: 232 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 267


>gi|157693349|ref|YP_001487811.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682107|gb|ABV63251.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 258

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 17/147 (11%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R+IR HS VP+I +S  D+P+    +     G DD V KP H   ++A+V+A+ RR  V 
Sbjct: 94  RMIRHHSNVPIIFLSSRDHPA--DMVMSMQLGADDFVQKPFHFDVLIAKVSAVLRR--VH 149

Query: 123 NNRAETGPIRVFSDGR-DPEV------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  AE   ++V+     D E        GEV  L + E  IL+ L+ ++   V++  +  
Sbjct: 150 DYNAEPASLKVWCGATIDLEKNTVTNDHGEV-ELTKNELFILKELIQHKNHIVSRESLIQ 208

Query: 176 AIYGLFDEA-VEENVVESHISKLRKKL 201
           A++   DE  V +N +  ++++LRKKL
Sbjct: 209 ALWE--DERFVSDNTLTVNVNRLRKKL 233


>gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
 gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 16/196 (8%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  +  +DG           +E ++ + +ED   I   ++       ++ R IR 
Sbjct: 23  LEKEGYQVVIANDG-----------KEAVELNEKEDPELILLDIMLPQLDGWQVCREIRK 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126
            SQVP+I ++    +   +   + G DD + KP   +E++AR+ A+ RR   +   A   
Sbjct: 72  KSQVPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRRTGQNQGEAVKE 131

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            +   + +     + +V G     P +E  ++ +L +N  +   + Q+   ++G FD   
Sbjct: 132 VKYDKLSINLTNYELKVNGVQVDTPPKEMELIYHLASNPNRVFTRDQLLDEVWG-FDYYG 190

Query: 186 EENVVESHISKLRKKL 201
           +   V+ H+ +LR+KL
Sbjct: 191 DSRTVDVHVKRLREKL 206


>gi|149374413|ref|ZP_01892187.1| DNA-binding heavy metal response regulator, putative [Marinobacter
           algicola DG893]
 gi|149361116|gb|EDM49566.1| DNA-binding heavy metal response regulator, putative [Marinobacter
           algicola DG893]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 28/229 (12%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58
            +L++D  L+ DG        G S++  ++    E +  + +E+  AI   L    G G 
Sbjct: 3   LLLVEDDRLLADGLSRQLEKAGFSVDTTHT--AREAMMLARQEEYRAIILDLGLPDGNGL 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            VL   R  + H   P++ ++        ++   +G DD + KP    E++AR+ AI RR
Sbjct: 61  DVLRKWR--KDHIAFPVLILTARGDWHDKVEGLKAGADDYLAKPFQTEELIARLNAIVRR 118

Query: 119 LK------VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +      V   R E    R      DG +  + G  F       R+L  LM+  G+  +
Sbjct: 119 SEGRIHSLVKAGRYELDENRQSLKSDDGTEHSLTGTEF-------RLLRCLMSRPGQVFS 171

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           K Q+   +Y L D    ENV+E++I +LRK     +G D + ++R  GY
Sbjct: 172 KEQLMEQLYNLNDTP-SENVIEAYIRRLRK----LVGNDTISTRRGQGY 215


>gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%)

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R IR   A  ++P+I ++        +   ++G DD + KP    E++ARV A+ R
Sbjct: 71  IEICRQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLR 130

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  + + +     V  D     V   G+   L   E R+L++ + + G   ++ ++  
Sbjct: 131 RAQPVSQKGQISWGDVSMDLASHRVVRAGKAIHLGPTEFRLLQFFLQHPGTVFSREELLD 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++G  D  VE   V+ HI +LRK L      D + + R  GY++D
Sbjct: 191 AVWG-PDIYVEPRTVDVHIRRLRKALNCDTEADIIRTVRAAGYALD 235


>gi|16130019|ref|NP_416583.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. MG1655]
 gi|26248453|ref|NP_754493.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           CFT073]
 gi|74312603|ref|YP_311022.1| DNA-binding transcriptional regulator BaeR [Shigella sonnei Ss046]
 gi|82543453|ref|YP_407400.1| DNA-binding transcriptional regulator BaeR [Shigella boydii Sb227]
 gi|82777414|ref|YP_403763.1| DNA-binding transcriptional regulator BaeR [Shigella dysenteriae
           Sd197]
 gi|89108899|ref|AP_002679.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. W3110]
 gi|91211367|ref|YP_541353.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UTI89]
 gi|110642289|ref|YP_670019.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 536]
 gi|117624275|ref|YP_853188.1| DNA-binding transcriptional regulator BaeR [Escherichia coli APEC
           O1]
 gi|157161570|ref|YP_001458888.1| DNA-binding transcriptional regulator BaeR [Escherichia coli HS]
 gi|170081709|ref|YP_001731029.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. DH10B]
 gi|170680336|ref|YP_001743060.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           SMS-3-5]
 gi|188492527|ref|ZP_02999797.1| DNA-binding response regulator BaeR [Escherichia coli 53638]
 gi|191169545|ref|ZP_03031273.1| DNA-binding response regulator BaeR [Escherichia coli B7A]
 gi|191169921|ref|ZP_03031475.1| DNA-binding response regulator BaeR [Escherichia coli F11]
 gi|193062926|ref|ZP_03044019.1| DNA-binding response regulator BaeR [Escherichia coli E22]
 gi|194428867|ref|ZP_03061401.1| DNA-binding response regulator BaeR [Escherichia coli B171]
 gi|215487302|ref|YP_002329733.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218549496|ref|YP_002383287.1| DNA-binding transcriptional regulator BaeR [Escherichia fergusonii
           ATCC 35469]
 gi|218558959|ref|YP_002391872.1| DNA-binding transcriptional regulator BaeR [Escherichia coli S88]
 gi|218690137|ref|YP_002398349.1| DNA-binding transcriptional regulator BaeR [Escherichia coli ED1a]
 gi|218705614|ref|YP_002413133.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           UMN026]
 gi|227887135|ref|ZP_04004940.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli 83972]
 gi|237704536|ref|ZP_04535017.1| transcriptional response regulatory protein [Escherichia sp.
           3_2_53FAA]
 gi|238901269|ref|YP_002927065.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli BW2952]
 gi|253772987|ref|YP_003035818.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162070|ref|YP_003045178.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B str.
           REL606]
 gi|256022229|ref|ZP_05436094.1| DNA-binding transcriptional regulator BaeR [Escherichia sp.
           4_1_40B]
 gi|260844689|ref|YP_003222467.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O103:H2 str. 12009]
 gi|291283320|ref|YP_003500138.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O55:H7 str. CB9615]
 gi|293405554|ref|ZP_06649546.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1412]
 gi|293410442|ref|ZP_06654018.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B354]
 gi|293415367|ref|ZP_06658010.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B185]
 gi|293446434|ref|ZP_06662856.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B088]
 gi|297520052|ref|ZP_06938438.1| DNA-binding transcriptional regulator BaeR [Escherichia coli OP50]
 gi|298381238|ref|ZP_06990837.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1302]
 gi|300897072|ref|ZP_07115538.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300930968|ref|ZP_07146328.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300955102|ref|ZP_07167506.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300978917|ref|ZP_07174430.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300981663|ref|ZP_07175649.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301021219|ref|ZP_07185252.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301026387|ref|ZP_07189832.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|306814798|ref|ZP_07448960.1| DNA-binding transcriptional regulator BaeR [Escherichia coli NC101]
 gi|307138737|ref|ZP_07498093.1| DNA-binding transcriptional regulator BaeR [Escherichia coli H736]
 gi|309787850|ref|ZP_07682460.1| transcriptional regulatory protein baeR [Shigella dysenteriae 1617]
 gi|312967314|ref|ZP_07781530.1| transcriptional regulatory protein baeR [Escherichia coli 2362-75]
 gi|312973671|ref|ZP_07787843.1| transcriptional regulatory protein baeR [Escherichia coli 1827-70]
 gi|331642699|ref|ZP_08343834.1| transcriptional regulatory protein BaeR [Escherichia coli H736]
 gi|331647732|ref|ZP_08348824.1| transcriptional regulatory protein BaeR [Escherichia coli M605]
 gi|331658159|ref|ZP_08359121.1| transcriptional regulatory protein BaeR [Escherichia coli TA206]
 gi|331663575|ref|ZP_08364485.1| transcriptional regulatory protein BaeR [Escherichia coli TA143]
 gi|59799175|sp|P69228|BAER_ECOLI RecName: Full=Transcriptional regulatory protein BaeR
 gi|59799176|sp|P69229|BAER_ECOL6 RecName: Full=Transcriptional regulatory protein BaeR
 gi|26108858|gb|AAN81061.1|AE016763_20 Transcriptional Regulatory protein baeR [Escherichia coli CFT073]
 gi|216533|dbj|BAA03141.1| BaeR [Escherichia coli]
 gi|1736788|dbj|BAA15935.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K12 substr. W3110]
 gi|1788394|gb|AAC75140.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. MG1655]
 gi|73856080|gb|AAZ88787.1| transcriptional response regulatory protein [Shigella sonnei Ss046]
 gi|81241562|gb|ABB62272.1| transcriptional response regulatory protein [Shigella dysenteriae
           Sd197]
 gi|81244864|gb|ABB65572.1| transcriptional response regulatory protein [Shigella boydii Sb227]
 gi|91072941|gb|ABE07822.1| transcriptional response regulatory protein BaeR [Escherichia coli
           UTI89]
 gi|110343881|gb|ABG70118.1| transcriptional regulatory protein BaeR [Escherichia coli 536]
 gi|115513399|gb|ABJ01474.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli APEC O1]
 gi|157067250|gb|ABV06505.1| DNA-binding response regulator BaeR [Escherichia coli HS]
 gi|169889544|gb|ACB03251.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. DH10B]
 gi|170518054|gb|ACB16232.1| DNA-binding response regulator BaeR [Escherichia coli SMS-3-5]
 gi|188487726|gb|EDU62829.1| DNA-binding response regulator BaeR [Escherichia coli 53638]
 gi|190900420|gb|EDV60241.1| DNA-binding response regulator BaeR [Escherichia coli B7A]
 gi|190909437|gb|EDV69022.1| DNA-binding response regulator BaeR [Escherichia coli F11]
 gi|192931569|gb|EDV84170.1| DNA-binding response regulator BaeR [Escherichia coli E22]
 gi|194413035|gb|EDX29323.1| DNA-binding response regulator BaeR [Escherichia coli B171]
 gi|215265374|emb|CAS09770.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218357037|emb|CAQ89669.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia fergusonii ATCC 35469]
 gi|218365728|emb|CAR03464.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli S88]
 gi|218427701|emb|CAR08608.2| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli ED1a]
 gi|218432711|emb|CAR13605.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli UMN026]
 gi|222033844|emb|CAP76585.1| Transcriptional regulatory protein baeR [Escherichia coli LF82]
 gi|226237431|dbj|BAH46953.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O55:H7]
 gi|226900902|gb|EEH87161.1| transcriptional response regulatory protein [Escherichia sp.
           3_2_53FAA]
 gi|227835485|gb|EEJ45951.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli 83972]
 gi|238860855|gb|ACR62853.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli BW2952]
 gi|242377732|emb|CAQ32493.1| BaeR transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253324031|gb|ACT28633.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973971|gb|ACT39642.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli B str. REL606]
 gi|253978165|gb|ACT43835.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli BL21(DE3)]
 gi|257759836|dbj|BAI31333.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O103:H2 str. 12009]
 gi|260448820|gb|ACX39242.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|281179177|dbj|BAI55507.1| two-component response regulator [Escherichia coli SE15]
 gi|284922073|emb|CBG35152.1| two-component response regulator [Escherichia coli 042]
 gi|290763193|gb|ADD57154.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O55:H7 str. CB9615]
 gi|291323264|gb|EFE62692.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B088]
 gi|291427762|gb|EFF00789.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1412]
 gi|291433015|gb|EFF05994.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B185]
 gi|291470910|gb|EFF13394.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B354]
 gi|294494062|gb|ADE92818.1| DNA-binding response regulator BaeR [Escherichia coli IHE3034]
 gi|298278680|gb|EFI20194.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1302]
 gi|299879705|gb|EFI87916.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300307464|gb|EFJ61984.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300317945|gb|EFJ67729.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300359122|gb|EFJ74992.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300398228|gb|EFJ81766.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300409550|gb|EFJ93088.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300461194|gb|EFK24687.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|305852192|gb|EFM52644.1| DNA-binding transcriptional regulator BaeR [Escherichia coli NC101]
 gi|307554152|gb|ADN46927.1| transcriptional regulatory protein BaeR [Escherichia coli ABU
           83972]
 gi|307626375|gb|ADN70679.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UM146]
 gi|308924249|gb|EFP69746.1| transcriptional regulatory protein baeR [Shigella dysenteriae 1617]
 gi|309702403|emb|CBJ01725.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310332266|gb|EFP99501.1| transcriptional regulatory protein baeR [Escherichia coli 1827-70]
 gi|312288122|gb|EFR16026.1| transcriptional regulatory protein baeR [Escherichia coli 2362-75]
 gi|312946701|gb|ADR27528.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315136713|dbj|BAJ43872.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli DH1]
 gi|315285690|gb|EFU45130.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315294400|gb|EFU53748.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315299488|gb|EFU58739.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320172686|gb|EFW47921.1| Response regulator BaeR [Shigella dysenteriae CDC 74-1112]
 gi|320183719|gb|EFW58557.1| Response regulator BaeR [Shigella flexneri CDC 796-83]
 gi|320195942|gb|EFW70566.1| Response regulator BaeR [Escherichia coli WV_060327]
 gi|320657502|gb|EFX25300.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663318|gb|EFX30623.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|323161803|gb|EFZ47682.1| transcriptional regulatory protein baeR [Escherichia coli E128010]
 gi|323168797|gb|EFZ54477.1| transcriptional regulatory protein baeR [Shigella sonnei 53G]
 gi|323936884|gb|EGB33168.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323940850|gb|EGB37038.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323948460|gb|EGB44441.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323951833|gb|EGB47707.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323956115|gb|EGB51867.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323961720|gb|EGB57323.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|324006443|gb|EGB75662.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324013872|gb|EGB83091.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|330911916|gb|EGH40426.1| response regulator BaeR [Escherichia coli AA86]
 gi|331039497|gb|EGI11717.1| transcriptional regulatory protein BaeR [Escherichia coli H736]
 gi|331043456|gb|EGI15594.1| transcriptional regulatory protein BaeR [Escherichia coli M605]
 gi|331056407|gb|EGI28416.1| transcriptional regulatory protein BaeR [Escherichia coli TA206]
 gi|331059374|gb|EGI31351.1| transcriptional regulatory protein BaeR [Escherichia coli TA143]
 gi|332097147|gb|EGJ02130.1| transcriptional regulatory protein baeR [Shigella boydii 3594-74]
 gi|332343861|gb|AEE57195.1| transcriptional regulatory protein BaeR [Escherichia coli UMNK88]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|325479624|gb|EGC82716.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 219

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S +P+I ++        +   D G DD + KP    E+++RV A+ RR K
Sbjct: 59  LSILKEIREFSNLPVIMLTARTDEFDKVTGLDLGADDYITKPFSILELISRVKAVLRRSK 118

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    T   I + +  R  +V  +   L  +E  +L  LM+N G  +++      I+G
Sbjct: 119 KKDKDDLTYKEISLNTSKRRVKVLDDKIDLTYKEFEMLLLLMSNVGNVISREDFLLKIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL+    +  + + R LGY +
Sbjct: 179 -YDYEGETRTVDVHIASLRSKLKETGKY--IHTVRNLGYKL 216


>gi|313201066|ref|YP_004039724.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|312440382|gb|ADQ84488.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 234

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 17/147 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA    P++ ++        +   + G DD V KP   REI+ARV AI RR + S+N
Sbjct: 72  RAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRTQPSDN 131

Query: 125 ----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +   G + ++ + R  E  G V  L   E  +LE L+ + G+ V+K+ +  ++ GL
Sbjct: 132 AQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDL--SLQGL 189

Query: 181 ------FDEAVEENVVESHISKLRKKL 201
                 FD +     ++ H+S +R+K+
Sbjct: 190 GRPLARFDRS-----IDVHLSSIRQKI 211


>gi|254444774|ref|ZP_05058250.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198259082|gb|EDY83390.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 2/159 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+  A  + P+I I+        ++  D+G DD V KP    E++AR+ A++RR L  
Sbjct: 63  LKRMRAASIRTPVIIITARDMHNEKIEGLDAGADDYVVKPFFVDELVARLNAVWRRSLGQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      + V    R+    G    +P +E  +L +LM   G+   + QIF  ++  F
Sbjct: 123 GLDVLSVDDLTVNLMTREVTRGGVKIDMPTKEFNLLVFLMKAPGRVFNRVQIFENVWN-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E N+V+ +I +LR+K+        +++ R +GY I
Sbjct: 182 DFDPETNLVDVYIGRLRRKIDQGDSKKLLETVRGVGYRI 220


>gi|220918203|ref|YP_002493507.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956057|gb|ACL66441.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 234

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 30/194 (15%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
             R DV  ++  L GK    LE+ R +R+ S VP+I ++        +   + G DD + 
Sbjct: 48  GGRFDVVLLDLMLPGK--DGLEVCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLA 105

Query: 101 KPIHHREILARVAAIYRR-----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           KP   RE+LAR+ A+ RR           ++V     +    RV  DGR+  + G  F L
Sbjct: 106 KPFSPRELLARIRAVVRRATGRAGPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFAL 165

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
                  L  L    G+ +A+ Q+     G  +EA + + V+ H+S+LR+    KLG DP
Sbjct: 166 -------LHALARRAGRVLAREQLMELAGGSAEEAFDRS-VDVHVSRLRQ----KLGDDP 213

Query: 210 -----VDSKRFLGY 218
                + + R  GY
Sbjct: 214 RRPRLIKTVRGAGY 227


>gi|110835404|ref|YP_694263.1| DNA-binding heavy metal response regulator [Alcanivorax borkumensis
           SK2]
 gi|110648515|emb|CAL17991.1| DNA-binding heavy metal response regulator, putative [Alcanivorax
           borkumensis SK2]
          Length = 239

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 5/116 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
              G DD + KP    E+LAR++A+ RR  VS    ET    GP  V    R   +  E 
Sbjct: 101 LSQGADDYMVKPTKQAELLARISALGRRAGVSEMDEETTLNVGPWTVDRSRRQILLDEEA 160

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             L  ++  +  YL  N GK +++  +   ++G+    +E   V+ HIS++R+ L+
Sbjct: 161 IKLTDKDYELACYLFQNVGKLMSRAHLLEKVWGIM-TPIESRTVDVHISRIRRSLQ 215


>gi|325845344|ref|ZP_08168644.1| putative response regulator SaeR [Turicibacter sp. HGF1]
 gi|325488598|gb|EGC91007.1| putative response regulator SaeR [Turicibacter sp. HGF1]
          Length = 224

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 17/163 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + I  H Q+P++ IS        L  F  G DD + KP   +E+  RV A   RLK 
Sbjct: 65  QLIKEIHQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFSAKEVAFRVKA---RLKT 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    + G I + +DG   +   E   L  +E ++L YL+ +  K V+K QI   ++G  
Sbjct: 122 TTKTIQFGNITI-TDGIVSK-NNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWG-- 177

Query: 182 DEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGY 218
           ++  E +N +  HI +LRKK+      DP   K       LGY
Sbjct: 178 EDYFEFDNTISVHIRRLRKKIE----VDPSKPKHITTIIGLGY 216


>gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRAET 128
           +VP+I ++    +   +   + G DD V KP   RE++ARV A+ RR+   K + N    
Sbjct: 72  KVPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLRRIEEVKANKNFCTF 131

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + V  D    + +G++  L  +E  +L+ L+  +G  + + ++   ++G +D   +  
Sbjct: 132 GDLIVNFDQGIVKKRGKIINLTPKEFVLLKVLIDAKGNVLTREELLDKVWG-YDYYGDTR 190

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221
           VV+ HI +LRKK+      D   S R++      GY  D
Sbjct: 191 VVDIHILRLRKKIE-----DDTQSPRYIRTVYGFGYKFD 224


>gi|315647496|ref|ZP_07900600.1| transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Paenibacillus vortex V453]
 gi|315277120|gb|EFU40458.1| transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Paenibacillus vortex V453]
          Length = 231

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 75/143 (52%), Gaps = 6/143 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+   ++++ ++ +S    ++  +   D G +D + KP    E+ AR+ ++ RR  + 
Sbjct: 63  LRRVRSNNNEIKILILSARTEIEDIIKGLDDGANDYLVKPFDFNELEARIRSLLRRSFIQ 122

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           N+   T G ++V +  +   +    F L ++E  ILEYLM N+ K ++  Q+   ++   
Sbjct: 123 NDVVLTLGDMKVNTAQKFAAIYDIKFDLTKKEYSILEYLMFNKNKVISPEQLIEHVW--- 179

Query: 182 DEAVE--ENVVESHISKLRKKLR 202
           D  V+   N ++ HI  L+KK+R
Sbjct: 180 DSEVDSFSNSLKYHIYSLKKKIR 202


>gi|300813449|ref|ZP_07093793.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512398|gb|EFK39554.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 233

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 25/207 (12%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRI--------IRAHSQVPLIGISD 80
           LE E +    A + + AIE F     + +   L +PR+        +R  S VP+I +S 
Sbjct: 23  LENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGEEAIKKLRDISFVPIIILSA 82

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-----ETGPIRVFS 135
                  +   + G DD + KP +  E++ARV +  RR    +N A     + G +++ +
Sbjct: 83  KSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHSYDNLASSEIIQIGNVKLNT 142

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
             +   V  ++  L   E +ILE+LM N  K  +   I+  ++   + A+E   V  HI 
Sbjct: 143 LEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEHVWN--EPAIEAKTVTVHIR 200

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++R+K+        VD KR +   + W
Sbjct: 201 RIREKIE-------VDPKRPMYIQVAW 220


>gi|254000070|ref|YP_003052133.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|253986749|gb|ACT51606.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 18/186 (9%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D+  ++  L GK G  +L   R +R  + +P+I I+   +++  +   D G DD + KP 
Sbjct: 46  DLLLLDIGLPGKDGISILTTLRAMR--NPLPVIVITARDAIEDRIRGLDLGADDYIVKPF 103

Query: 104 HHREILARVAAIYRRLK------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157
              E++ARV A+ RR        +SN      P+       +P++      L +RE  +L
Sbjct: 104 ELSELMARVRAVMRRKTGEGMPLLSNGSLTLNPM-THEVLIEPDI---CHALSKREYALL 159

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           E L+   G  ++++++ + +YG + E VE N +E  +  LRKKL N      + + R +G
Sbjct: 160 EALLIRPGAILSRSELETKVYG-WGEEVESNAIEFLLHSLRKKLGNT----TIKNIRGVG 214

Query: 218 YSIDWN 223
           + I  N
Sbjct: 215 WMISKN 220


>gi|238787668|ref|ZP_04631466.1| Transcriptional regulatory protein tctD [Yersinia frederiksenii
           ATCC 33641]
 gi|238724455|gb|EEQ16097.1| Transcriptional regulatory protein tctD [Yersinia frederiksenii
           ATCC 33641]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 3/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +    +P++ ++    +   +   + G DD + KP    E+ AR+ A+ RR    
Sbjct: 60  LARLRKRGQTLPVLLLTARTEVADRVKGLNLGADDYLTKPFEMDELEARIRALLRRSVGG 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N +        + D     +  +   L  RE  +L  LM  RG+ VAK Q+F  ++ L D
Sbjct: 120 NGQVVQFGDLTYHDEGYFLLADKPLALTPRESAVLTSLMHRRGRPVAKQQLFEQVFTLSD 179

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +A  E+ +E ++ ++RKKL        + + R LGYS++ 
Sbjct: 180 DANPES-IELYVHRVRKKLHG--ANVSIQTLRGLGYSLEC 216


>gi|227112647|ref|ZP_03826303.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 242

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 8/155 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP+I ++        L   + G DD + KP   RE++ RV
Sbjct: 62  LMLPGCDGLTLCRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRV 121

Query: 113 AAIYRRLKVSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
             + RR    N+      + ET  + +   G      G+   L   E R+L+ L A  GK
Sbjct: 122 RTLLRRCGWQNDGLKAVEKTETA-LLIDKSGFQASYLGQNLDLTPAEFRLLKTLSAEPGK 180

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             ++  +   +Y  +   V +  ++SHI  LR+KL
Sbjct: 181 VFSREALLDKLYDDY-RVVTDRTIDSHIKNLRRKL 214


>gi|226940731|ref|YP_002795805.1| two component transcriptional regulator, winged helix family
           [Laribacter hongkongensis HLHK9]
 gi|226715658|gb|ACO74796.1| two component transcriptional regulator, winged helix family
           [Laribacter hongkongensis HLHK9]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 15/212 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L   GY   + +DG   E  N L      Q S  + V          GE VLE  R+   
Sbjct: 24  LTDAGYHCRWINDGA--EAMNKLN-----QPSLPDMVLLDLGLPGLDGEIVLE--RLREQ 74

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128
              VP++ ++   +L+  +   + G DD V KP    E+LARV A+ RR +     R   
Sbjct: 75  GKDVPVLVLTARDALEQRIRGLNLGADDYVVKPFDVDELLARVRALLRRAQPAGERRLRW 134

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             + +  D      QGE   L   E R+L  LM +    ++K+++   +Y    E    N
Sbjct: 135 RDVELAVDVTQAWRQGEPLDLTAVELRLLHALMTHPQIPLSKSRLLQLVYDDVPEH-SSN 193

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  H+S    KLR+KLG D + ++R LG+ +
Sbjct: 194 PLAVHLS----KLRHKLGKDSILNERGLGWRL 221


>gi|126453771|ref|YP_001065859.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|242315026|ref|ZP_04814042.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254178047|ref|ZP_04884702.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254199512|ref|ZP_04905878.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254205827|ref|ZP_04912179.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254358773|ref|ZP_04975046.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|126227413|gb|ABN90953.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|147749108|gb|EDK56182.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147753270|gb|EDK60335.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148027900|gb|EDK85921.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|160699086|gb|EDP89056.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|242138265|gb|EES24667.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
          Length = 230

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAE 127
           + +P++ +++       ++  ++G DD + KP   RE +ARV A+ RR  +S       E
Sbjct: 71  APLPILVLTNAVLETDLVEALEAGADDYLIKPPREREFVARVNALRRRASISKQFEGTIE 130

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G  R+ +  R   + GE  PL  +E  I+E L  + G+ V +  I S ++G   E    
Sbjct: 131 IGGYRIATVERAVYLAGERIPLSPKEYEIVELLARHVGQVVPRKTIISRVWGRAAEEEVS 190

Query: 188 NVVESHISKLRKKL 201
             +++HI ++R+K+
Sbjct: 191 RSLDTHIYRIRRKM 204


>gi|77745281|gb|ABB02541.1| response regulator [Lactobacillus reuteri]
          Length = 239

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R HSQVP+I IS        +    +G DD + KP     +LA++ A+ RR K + +  
Sbjct: 80  VRKHSQVPIIVISAAEIDTNVMHAVAAGADDYIMKPFAMTVLLAKIQALLRRNKQTTDAE 139

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E         P+       +   Q     L   E  +L+ L+++R K V+K Q+   ++ 
Sbjct: 140 EIMWDHNSFNPLTNILMNENGTAQ-----LTPTEGAMLQVLLSHRNKTVSKEQLLQWLWQ 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              + + EN +  +IS+LR KL        + ++R LGY
Sbjct: 195 -GGKYLNENTLNVNISRLRTKLSTIGLRQCIHTERGLGY 232


>gi|30022879|ref|NP_834510.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229130093|ref|ZP_04259054.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|29898438|gb|AAP11711.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228653308|gb|EEL09185.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL Y M N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|326794734|ref|YP_004312554.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326545498|gb|ADZ90718.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 2/142 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S +P+I ++        L   + G DD V KP   RE++ARV A  RR++
Sbjct: 61  IEVCKQVRQFSGIPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREVVARVKANLRRVE 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +    +T    + +D      +GE+  L   E ++L+ L+   G+   +  I  +IY 
Sbjct: 121 LDHIESPKTDGFDLDADRLRATYKGELIDLTTVEFQLLQLLIKEPGRVFGRDLIMKSIYS 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
                V +  ++SHI KLRKK+
Sbjct: 181 -DSRVVSDRTIDSHIKKLRKKI 201


>gi|239982704|ref|ZP_04705228.1| two-component system regulator [Streptomyces albus J1074]
 gi|291454552|ref|ZP_06593942.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357501|gb|EFE84403.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 232

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 13/163 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA + VP+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR +  +   
Sbjct: 69  IRARTSVPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVARRNQPGDAEG 128

Query: 127 ETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              P         ++V    R   V GEV  L R+E  +L  L+   G    + QI S +
Sbjct: 129 AATPAPGALVIGAVQVELPTRRVSVDGEVVALTRKEFDLLALLVQRPGVVFRREQIISEV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    E      +E H++ LR KLR       +++ R +GY +
Sbjct: 189 WRTSWEGTGRT-LEVHVASLRSKLRRP---ALIETVRGVGYRL 227


>gi|238751695|ref|ZP_04613184.1| Transcriptional regulatory protein tctD [Yersinia rohdei ATCC
           43380]
 gi|238710105|gb|EEQ02334.1| Transcriptional regulatory protein tctD [Yersinia rohdei ATCC
           43380]
          Length = 224

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 13/166 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +    +P++ ++    +   +   + G DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LARLRKRGQTLPVLLLTARTEVADRVKGLNLGADDYLTKPFELDELEARIRALLRR---- 118

Query: 123 NNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  ETG    F D    +     +  +   L  RE  +L  LM  RG+ VAK Q+F  +
Sbjct: 119 -SIGETGQAVEFGDLTYHDEGYFLLADKPLALTPRESAVLTSLMHRRGRPVAKQQLFEQV 177

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + L D+A  E+ +E ++ ++RKKL+       + + R LGYS++  
Sbjct: 178 FTLSDDANPES-IELYVHRVRKKLQGS--NVSIQTLRGLGYSLECT 220


>gi|225575608|ref|ZP_03784218.1| hypothetical protein RUMHYD_03700 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037161|gb|EEG47407.1| hypothetical protein RUMHYD_03700 [Blautia hydrogenotrophica DSM
           10507]
          Length = 236

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R+ S  P+I IS     +  +D  D+G DD + KP    E+LAR+ +  RR++
Sbjct: 65  IEVIKSVRSWSMCPIIVISARSEDKDKIDALDAGADDYLTKPFSVDELLARLRSTMRRIQ 124

Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + A       E G +R+        V+GE   L   E  +L  L  N GK +  + I
Sbjct: 125 YLEDNAGKETPVFENGQLRIDYSSASVTVKGEEIHLMPIEYSLLCLLAQNIGKVLTHSYI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLR---KKLRNKL 205
              I+        +N +ES +S LR     LR K+
Sbjct: 185 LDKIW--------KNSIESDLSSLRVYMTSLRKKI 211


>gi|254510565|ref|ZP_05122632.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
 gi|221534276|gb|EEE37264.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 18/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +D     FG++G  +E   + +  E L  +      AI    +  G   L
Sbjct: 5   LLIVEDDQDTRDFIAKGFGEEGYVVE--VAADGREGLYHATDGGFDAIVLDRMLPGLDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA   + P++ ++   ++   +    +G DD + KP   +E+ AR+ A+ RR  
Sbjct: 63  SLIKSMRAAGLKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRR-- 120

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                AE  P  +  D       R     G    L  RE +ILE+ +  + + V++T + 
Sbjct: 121 --PQEAEETPTLICRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLL 178

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             ++   FD     NVV+ HISKLR++L    G DPV ++ R  GY +
Sbjct: 179 EGVWDYHFDP--NTNVVDVHISKLRRQLDGD-GADPVIETVRGAGYMV 223


>gi|163790938|ref|ZP_02185361.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873780|gb|EDP67861.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 235

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 12/211 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F       E F + + EE L+         I   L+   +  L
Sbjct: 4   ILVVDDEKPISD--IVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R +  +P+I ++   S    +   + G DD V KP  +RE+ ARV A  RR   
Sbjct: 62  EVCREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELAARVKANLRRHDN 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +V  N  E G + V  D      +G    L  RE  +L YL  + G+ + +  
Sbjct: 122 AKTQVVEEVETNDIEVGALTVHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 211


>gi|145637649|ref|ZP_01793304.1| transcriptional regulatory protein [Haemophilus influenzae PittHH]
 gi|145269172|gb|EDK09120.1| transcriptional regulatory protein [Haemophilus influenzae PittHH]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAET 128
           H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A I RR    ++  E 
Sbjct: 70  HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGYHHSVIEQ 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             +++  + R   +  +   L  RE ++LE LM N+ + ++++ I   +   +DE +   
Sbjct: 130 AGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKLSS-WDEEISSG 188

Query: 189 VVESHISKLRKKL 201
            ++ HI  LR+KL
Sbjct: 189 ALDVHIYNLRQKL 201


>gi|118470690|ref|YP_884659.1| two component response transcriptional regulatory protein prra
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171977|gb|ABK72873.1| two component response transcriptional regulatory protein prra
           [Mycobacterium smegmatis str. MC2 155]
          Length = 246

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           + +P+  +S   ++   +   ++G DD + KP    E++AR+ A+ RR   +   ++T  
Sbjct: 91  NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRASHTEQPSDTMT 150

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GP+ + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++G +D  V+ 
Sbjct: 151 VGPVTIDTARRLVFVSGERVDLTKREFDLLAVLAENAGVVLSRQRLLELVWG-YDFDVDT 209

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           NV +  IS LR+KL        + + R +GY
Sbjct: 210 NVADVFISYLRRKLERDGVPRVIHTVRGIGY 240


>gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 243

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  S++  
Sbjct: 72  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVARSSHEG 131

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G +R+ ++ R    + E   L   E  +LE L++  G+  ++ +I   ++G
Sbjct: 132 IPSSGVIQVGDLRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRAEILQEVWG 191

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 192 YTPERHVDTRVVDVHISRLRAKLED 216


>gi|53719678|ref|YP_108664.1| putative two component system response regulator [Burkholderia
           pseudomallei K96243]
 gi|52210092|emb|CAH36066.1| putative two component system, response regulator [Burkholderia
           pseudomallei K96243]
          Length = 236

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAE 127
           + +P++ +++       ++  ++G DD + KP   RE +ARV A+ RR  +S       E
Sbjct: 77  APLPILVLTNAVLETDLVEALEAGADDYLIKPPREREFVARVNALRRRASISKQFEGTIE 136

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G  R+ +  R   + GE  PL  +E  I+E L  + G+ V +  I S ++G   E    
Sbjct: 137 IGGYRIATVERAVYLAGERIPLSPKEYEIVELLARHVGQVVPRKTIISRVWGRAAEEEVS 196

Query: 188 NVVESHISKLRKKL 201
             +++HI ++R+K+
Sbjct: 197 RSLDTHIYRIRRKM 210


>gi|15595953|ref|NP_249447.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100216|ref|ZP_01364134.1| hypothetical protein PaerPA_01001239 [Pseudomonas aeruginosa PACS2]
 gi|116048671|ref|YP_792529.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893301|ref|YP_002442170.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254239118|ref|ZP_04932441.1| hypothetical protein PACG_05301 [Pseudomonas aeruginosa C3719]
 gi|254245010|ref|ZP_04938332.1| hypothetical protein PA2G_05892 [Pseudomonas aeruginosa 2192]
 gi|296390895|ref|ZP_06880370.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313105577|ref|ZP_07791843.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9946643|gb|AAG04145.1|AE004510_9 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115583892|gb|ABJ09907.1| probable two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171049|gb|EAZ56560.1| hypothetical protein PACG_05301 [Pseudomonas aeruginosa C3719]
 gi|126198388|gb|EAZ62451.1| hypothetical protein PA2G_05892 [Pseudomonas aeruginosa 2192]
 gi|218773529|emb|CAW29341.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310878345|gb|EFQ36939.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+      +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  + 
Sbjct: 63  LARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLG 122

Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             + +     V+  G R   +  +   L  RE+ +LE ++A  G+ ++K Q+ + ++GL 
Sbjct: 123 GEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVFGL- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE    + +E ++ +LRKKL    G   + + R LGY ++
Sbjct: 182 DEEASADAIEIYVHRLRKKLEG--GAVRIVTFRGLGYLLE 219


>gi|331268875|ref|YP_004395367.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125425|gb|AEB75370.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I ++     +  L  ++ G DD V KP   + ++A+V A+ +R  +  N  
Sbjct: 66  IRELSKVPIIMLTAKSEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRSIIDINEE 125

Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       + +     + ++ G+V  L  +E  +L + + N+   +++ ++   ++G FD
Sbjct: 126 KNIINYNGLEINEPSNEVKIDGKVIVLSPKEYDLLLFFVKNKDIVLSRDKLLDRVWG-FD 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                  V++HI +LR+KL+NK   D + + R  GY  + N
Sbjct: 185 YDGGLRTVDTHIKRLREKLKNKA--DYIVTVRGKGYKFEVN 223


>gi|260778851|ref|ZP_05887743.1| two-component system response regulator QseB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605015|gb|EEX31310.1| two-component system response regulator QseB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 160

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 12/153 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P+I +S   +L   ++  ++G DD   KP    E++AR+ A  RR   S N +    + 
Sbjct: 14  TPVIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRR--ASGNASPVMQVG 71

Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
             S D R  +V  QG+   L   E +++ Y M N  K +++T++   IY   FD   + N
Sbjct: 72  SLSLDTRSSKVMWQGQAIDLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR--DSN 129

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 130 TIEVFIGRIRKKIAPKV----IKTVRGLGYQLN 158


>gi|197123400|ref|YP_002135351.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173249|gb|ACG74222.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 234

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 30/194 (15%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
             R DV  ++  L GK    LE+ R +R+ S VP+I ++        +   + G DD + 
Sbjct: 48  GGRFDVVLLDLMLPGK--DGLEVCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLA 105

Query: 101 KPIHHREILARVAAIYRR-----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           KP   RE+LAR+ A+ RR           ++V     +    RV  DGR+  + G  F L
Sbjct: 106 KPFSPRELLARIRAVVRRATGRAGPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFAL 165

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
                  L  L    G+ +A+ Q+     G  +EA + + V+ H+S+LR+    KLG DP
Sbjct: 166 -------LHALARRAGRVLAREQLMELAGGSAEEAFDRS-VDVHVSRLRQ----KLGDDP 213

Query: 210 -----VDSKRFLGY 218
                + + R  GY
Sbjct: 214 RRPRLIKTVRGAGY 227


>gi|261410069|ref|YP_003246310.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286532|gb|ACX68503.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 103/220 (46%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD A +++  +     +G ++  F + + EE     A E V      ++   +   +
Sbjct: 5   LIADDDAHIRELLLYHLQTEGYTV--FTAADGEEASALLAEEQVHLAVVDVMMPNKDGYQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L   IR +  VP+I ++    L      F  G DD + KP   RE+L R+ A+ RR + V
Sbjct: 63  LCEEIRRYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQMV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S ++       +     + +  G+V  LP +E  +L  L +   +  ++ ++   I+G  
Sbjct: 123 SADKIRLNETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWGT- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   ++  V+ HI +LR++  ++ G   + + R +GY ++
Sbjct: 182 DFDGDDRTVDVHIKRLRERFADRSGDFRIRTVRGVGYKLE 221


>gi|157144972|ref|YP_001452291.1| DNA-binding transcriptional regulator BaeR [Citrobacter koseri ATCC
           BAA-895]
 gi|157082177|gb|ABV11855.1| hypothetical protein CKO_00702 [Citrobacter koseri ATCC BAA-895]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLKVSNNRAE---TGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K      +     P+ +  +GR     +G++  L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQQLDAQSPL-IVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|150007457|ref|YP_001302200.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|255013954|ref|ZP_05286080.1| two-component system response regulator [Bacteroides sp. 2_1_7]
 gi|262382003|ref|ZP_06075141.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298375433|ref|ZP_06985390.1| response regulator DrrA [Bacteroides sp. 3_1_19]
 gi|149935881|gb|ABR42578.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|262297180|gb|EEY85110.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298267933|gb|EFI09589.1| response regulator DrrA [Bacteroides sp. 3_1_19]
          Length = 228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 11/149 (7%)

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ RI+R     +  P+I ++   +    L  F+ G DD ++KP   R+++ARV A+ RR
Sbjct: 63  KMARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLRR 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +   E   +   +   D +     V G   PL ++E  IL+ L+ N+G   ++ +I
Sbjct: 123 TSEKSKEKEIEKLEYETLALDTKRIKATVDGVEVPLTKKEFEILKLLLENKGNVFSREEI 182

Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKL 201
            S I+   DE  V +  ++ +I++LRKK+
Sbjct: 183 LSRIWK--DEVYVLDRTIDVNITRLRKKI 209


>gi|150389477|ref|YP_001319526.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949339|gb|ABR47867.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 237

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 19/169 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA S VP++ IS        +  F  G DD + KP   +E+  RV A  RR   
Sbjct: 69  EICKRIRAISNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRVKASLRRTNQ 128

Query: 122 SNNR-----AETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N +      E GP ++  D +  EV   G++  L  +E +I  Y+  N  + ++K QI 
Sbjct: 129 RNEKYQDTIYELGPFKI--DEKKIEVIKNGQLVELLPKEYKIFLYMTKNPNQILSKEQIS 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGY 218
           S ++G  D    +N +  HI +LR+K+ +    DP +     +K+ LGY
Sbjct: 187 SKVWGE-DYIGFDNTIMVHIRRLREKIED----DPSNPKHIINKKGLGY 230


>gi|326328836|ref|ZP_08195171.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
           Broad-1]
 gi|325953367|gb|EGD45372.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R   +VP+I ++   S    +   + G DD V KP   RE++ RV ++ +R  
Sbjct: 61  LEVCRRLRQAGEVPIIMLTALGSEADRIMGLELGADDYVGKPFSPRELVLRVDSVLKRTG 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S        G I V +D R     G    L  RE  +L YL+A+ GK   +  +   ++
Sbjct: 121 HSGEGGVVSDGSIVVDADRRVATNGGAELALTTREFDLLRYLIAHPGKAFTREDLLEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           G      + + V  H+ +LR+K+ +    DP   +R +
Sbjct: 181 GW--TIGDRSTVTVHVRRLREKIES----DPTRPERLV 212


>gi|317497326|ref|ZP_07955649.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895395|gb|EFV17554.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124
           R    +P++ I+   +L   ++  D G DD + KP H +E+LARV A+ RR   +++S +
Sbjct: 70  RKGISIPILIITAMSTLDNRVEGLDGGADDYLVKPFHIKELLARVRALTRRPANIQLS-S 128

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           + + G +    D R          L  +E  +    M N     ++ Q+   I+G   E 
Sbjct: 129 KLQYGDLTFDKDSRTLSTPNNSLLLTSKETELTFVFMQNPETLFSREQLILKIWGSSSE- 187

Query: 185 VEENVVESHISKLRKKLR 202
           VE   V+S+IS LRK+L+
Sbjct: 188 VETGNVDSYISFLRKRLK 205


>gi|303229207|ref|ZP_07316008.1| putative Sensory transduction protein regX3 [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303231556|ref|ZP_07318285.1| putative Sensory transduction protein regX3 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513802|gb|EFL55815.1| putative Sensory transduction protein regX3 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516220|gb|EFL58161.1| putative Sensory transduction protein regX3 [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YR 117
            E+ R IR   +VP++ ++        +     G DD + KP     ++A++ A+   Y+
Sbjct: 62  FEVCRAIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYK 121

Query: 118 RLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RL     V  N  ++G IR+        V  +   L ++E ++LE+LM NR    +K ++
Sbjct: 122 RLTEKDVVDTNAIQSGDIRLDPKMMKVWVNDKEVHLKKKEFQLLEFLMRNRDIVFSKEEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +S ++GL D   +   V  HI++LR+++      +P DSK  +
Sbjct: 182 YSRVWGL-DSYGDYATVAVHINRLREEIEE----NPSDSKHII 219


>gi|291530313|emb|CBK95898.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           70/3]
 gi|291557127|emb|CBL34244.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETG 129
              P++ ++   +    +  F +G DD + KP+   E+L R++A+ RR  ++N ++   G
Sbjct: 68  CNTPVLMVTARETSADKIAGFRAGTDDYMVKPVDDEEMLLRISALLRRSNIANEHKLHAG 127

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
              +  D       G    LP +E  +L  L++ + K   + Q+   ++ +  E  +E  
Sbjct: 128 NTVLDYDALTVTCGGVTHELPNKEFMLLFKLLSYQNKIFTRRQLMDELWDMETET-DERT 186

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ HI++LR++ R+   F+ V + R LGY
Sbjct: 187 IDVHINRLRERFRDNEDFEIV-TVRGLGY 214


>gi|317129755|ref|YP_004096037.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474703|gb|ADU31306.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 230

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 6/147 (4%)

Query: 61  LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            EL + +R H  ++ P+I ++     +  ++    G DD + KP   +E+ ARV ++ RR
Sbjct: 62  FELLKTLREHLDNKTPVILLTALGDTERIVEGLKLGADDYLVKPFEPKELAARVESVIRR 121

Query: 119 LKVSNNRAETGPIR--VFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            K   ++ E+  ++  VF     +     ++ PL ++E +I   L +NRGK  ++  +  
Sbjct: 122 TKNYKSKVESFIVKDLVFQPSNYNISFNNKILPLTKKEFQIFYRLASNRGKVYSRDHLLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR 202
             +G+  E  +   V++H+  +R+KL+
Sbjct: 182 LEWGMEYEG-DNRTVDTHVKNIREKLK 207


>gi|291301374|ref|YP_003512652.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290570594|gb|ADD43559.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 230

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 13/134 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP------EVQGEVF 147
           G DD + KP   RE+ ARV  + RR   S   A T  + V +   DP          EV 
Sbjct: 102 GADDYITKPFSPRELTARVRTVLRR--ASGGSAATEALTVGAVRLDPARRRVWAADAEV- 158

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E  +L  LM N G+  A+ Q+ SA++G +  +     V+ HI++LR KL +    
Sbjct: 159 ELTVTEFDLLASLMRNPGQVFAREQLLSAVWG-YTASAGTRTVDVHIAQLRGKLGDH--- 214

Query: 208 DPVDSKRFLGYSID 221
            P+ + R +GY+ D
Sbjct: 215 SPIRTVRGVGYAAD 228


>gi|167035362|ref|YP_001670593.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166861850|gb|ABZ00258.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 224

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +RA S   ++ ++ +  L   +   D G DD + KP    E+LAR+ ++ RR   ++ + 
Sbjct: 66  LRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRR---NDQQL 122

Query: 127 ETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           +   +RV     DP        G+   L  +E  +L  LM   G+ +++TQI S ++ + 
Sbjct: 123 QPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWDMN 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 183 FD--CDTNVVEVSIRRLRAKIDDPFDNKLIHTLRGVGYVLE 221


>gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 75/141 (53%), Gaps = 6/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           +R  S++P+I ++    L+  L+  ++G DD + KP   +E++ RV  + RR  KV   +
Sbjct: 68  LRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKVQEEK 127

Query: 126 AETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                + +  D +D +V  +G+   L  +E  +L+ L  N  K + +  + + ++G+  +
Sbjct: 128 IVLKDLTM--DLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGIASD 185

Query: 184 AVEENVVESHISKLRKKLRNK 204
             + N+V+ +I  +R KL +K
Sbjct: 186 -YDSNIVDVYIKNIRNKLEDK 205


>gi|154500018|ref|ZP_02038056.1| hypothetical protein BACCAP_03676 [Bacteroides capillosus ATCC
           29799]
 gi|150271616|gb|EDM98873.1| hypothetical protein BACCAP_03676 [Bacteroides capillosus ATCC
           29799]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 97/195 (49%), Gaps = 13/195 (6%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           F++ + +E LQ     ++  +   ++   +  L +   IRA S VP++ ++      T +
Sbjct: 29  FSAYDGDEALQLFECSNIDLVILDIMLPKKTGLAVLHTIRAKSSVPILMLTAISDEYTQV 88

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRV-FS--DGRDPEVQ 143
             FD   DD + KP     +  RV A+ RR    VS +    G + V FS    + PE +
Sbjct: 89  TSFDEQADDYITKPFSMVLLGRRVTALLRRSGQTVSPDTMTFGDVTVDFSGYTAKGPEGK 148

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ P   +E  +L+ L+ ++G  + ++Q+  +++G  D  + +  ++++I  LRKKLR 
Sbjct: 149 IDITP---KEIDLLKLLVEHKGLVLTRSQMLDSLWGA-DYPIIDRTIDTYIKNLRKKLR- 203

Query: 204 KLGFDPVDSKRFLGY 218
               D + + + +GY
Sbjct: 204 ---LDCIVTVKGIGY 215


>gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2]
 gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 21/161 (13%)

Query: 81  YPSLQTTL--DFFDS------GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----- 127
           YP L  T   D FD       G DD + KP   RE+ ARV AI RR +  + + E     
Sbjct: 75  YPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRTQTLSVQPEETEEP 134

Query: 128 ------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G +++  +  +   Q E   L  +E  +L YL  ++G+ + +  + +A++  +
Sbjct: 135 DAGELIIGELKILPEHYEVYFQNERLELTPKEFELLLYLGRHKGRVLTRDLLLNAVWN-Y 193

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           D A +  +V+ HIS LR K+ +N    + + + R LGY ++
Sbjct: 194 DFAGDTRIVDVHISHLRDKIEKNTKKPEYIKTIRGLGYKME 234


>gi|194436317|ref|ZP_03068419.1| DNA-binding response regulator BaeR [Escherichia coli 101-1]
 gi|194425045|gb|EDX41030.1| DNA-binding response regulator BaeR [Escherichia coli 101-1]
 gi|323972772|gb|EGB67971.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|325978470|ref|YP_004288186.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178398|emb|CBZ48442.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 74/145 (51%), Gaps = 5/145 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +  I +  +Q  +I ++    +   +   D+G DD + KP   +E+LAR+ ++ RR+   
Sbjct: 63  VQEIRQTGNQSHIIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRRVDTN 122

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
            ++N    G +   + G    V      L  +E ++LE+ M N GK+++  QIF+ ++  
Sbjct: 123 FTSNILTVGTV-TLNVGEQELVSQNTIRLAGKESKMLEFFMLNAGKKLSTDQIFNHVWAN 181

Query: 180 -LFDEAVEENVVESHISKLRKKLRN 203
              D  ++   V  ++S LR+KL++
Sbjct: 182 DKADPEIDNGYVFIYVSYLRQKLKS 206


>gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+    ++ P++ ++   SL+  L     G DD V KP    E++AR+  I RR   S
Sbjct: 76  LRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAGKS 135

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   E+ P  VF D        +    G++  L   E  +L Y M N    ++K QI   
Sbjct: 136 DGARES-PTLVFEDIELNEETHEVWKAGQLVSLSPTEFTLLRYFMVNARIVLSKRQILEH 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++  +D   + NVVES++S LR+K+
Sbjct: 195 VWH-YDFGGDMNVVESYVSYLRRKI 218


>gi|229094210|ref|ZP_04225289.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228689202|gb|EEL43024.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 222

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 59  EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSN- 117

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 118 CNQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 178 VWG-YNVVVNPNVVDLYIGYIRKKLKCEKKNRYIQTIHGRGYSM 220


>gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
 gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
          Length = 228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 16/169 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ +++R  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR  
Sbjct: 61  IEVCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRR-- 118

Query: 121 VSNNRAE-TGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            S  +AE   P+ +          D R   V G+   L  +E  +LE LMA+  K  ++ 
Sbjct: 119 -SGKKAEPVKPVNIMEINGMKVELDSRRVFVHGKELNLTAKEFDLLELLMAHPNKVYSRN 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218
           ++   I+G      +   V+ H+ +LR+K+ +  G +PV   +K  +GY
Sbjct: 178 ELLDTIWGSTYPG-DARTVDVHVRRLREKIEDNPG-EPVYIHTKWGVGY 224


>gi|119468399|ref|ZP_01611490.1| Transcriptional regulatory protein in two-component regulatory
           system with baeS [Alteromonadales bacterium TW-7]
 gi|119447907|gb|EAW29172.1| Transcriptional regulatory protein in two-component regulatory
           system with baeS [Alteromonadales bacterium TW-7]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+  +EL + IR  S VP+I +S        L   + G DD + KP  + E++ARV AI 
Sbjct: 58  GQSGIELCKAIRRFSNVPIIMVSAKVEEIDRLLGLELGADDYICKPFSYAELVARVKAIL 117

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RRL VS    +T  +++       + Q     L   E ++ + L  N  +  ++  +   
Sbjct: 118 RRLNVS--AVQTSVMQLDETTYKVKYQDNDIELTNFEFQLFKPLFNNPSRIYSRDSLMDT 175

Query: 177 IYGLFDE-AVEENVVESHISKLRKKL 201
           +Y   D+  V    ++SHI KLRKKL
Sbjct: 176 MYT--DQRIVSHRTIDSHIKKLRKKL 199


>gi|83953229|ref|ZP_00961951.1| two component transcriptional regulator, winged helix family
           protein [Sulfitobacter sp. NAS-14.1]
 gi|83842197|gb|EAP81365.1| two component transcriptional regulator, winged helix family
           protein [Sulfitobacter sp. NAS-14.1]
          Length = 218

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 10/152 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ ++    +   ++  + G DD V KP    E+ AR+  + RR   +N  A+T  +
Sbjct: 72  RTPILILTARDKVSDRIEGLNRGADDYVIKPFDLDEVKARIHTVCRR--SANQFAQTVQL 129

Query: 132 R-VFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             V  +  D  V     P  L  +E  + E L+  + + V K  + +AIY  + E VE N
Sbjct: 130 HDVVVNLSDHTVMRAEQPVRLTAKEWGVFETLLRRKPQIVPKESLEAAIYD-YGEEVESN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E+HIS    +LR KLG D + + R LGY++
Sbjct: 189 AIEAHIS----RLRTKLGKDLIATHRGLGYAL 216


>gi|329944314|ref|ZP_08292573.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328531044|gb|EGF57900.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 24/222 (10%)

Query: 18  LFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAF-----------LIGKGEKVLELP 64
           L  DD  SL       LE E +  +   +   A++AF           L+  G   +E+ 
Sbjct: 6   LVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVSPDLVLLDLMLPGLDGVEIC 65

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SN 123
           R+IR+ S VP+I ++     Q  +   ++G DD V KP   +E+LARV+   RR    + 
Sbjct: 66  RLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNPGAA 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G + +   G   +    V  L   E  +L  L  +  K   + ++ S ++G +  
Sbjct: 126 EHVRAGDLDIDVAGHQVKRGETVIALTPLEFELLVTLARSPWKVFTREELLSQVWG-YQH 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
             +  +V  H+ +LR K+      DP     V + R +GY +
Sbjct: 185 PADTRLVNVHVQRLRAKIEK----DPERPSIVVTVRGVGYRV 222


>gi|293401928|ref|ZP_06646068.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304586|gb|EFE45835.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 11/149 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ +IIR     P+I ++        +     G DD + KP +  E++ARV A  RR K
Sbjct: 62  FEICKIIREKYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYK 121

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N   +   +  F      +D     +  +V  L   E  IL YL  NRG+ V   ++F
Sbjct: 122 KYNTTKDNVNVIDFKGLIIDNDSHQCTLYDKVLNLTPIEFSILWYLCKNRGRVVPSEELF 181

Query: 175 SAIY--GLFDEAVEENVVESHISKLRKKL 201
            A++    FD     N V  HI +LR+K+
Sbjct: 182 EAVWKEKYFD---SNNTVMVHIRRLREKM 207


>gi|257094547|ref|YP_003168188.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047071|gb|ACV36259.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 243

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 14/172 (8%)

Query: 53  LIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G    ++ R +RA H+ VP+I +S   +    +   + G DD + KP    E++AR
Sbjct: 54  LMLPGADGWDVCRHLRARHADVPVIMLSARSAEAHRVLGLELGADDYLAKPFSMLELVAR 113

Query: 112 VAAIYRR---LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           V A+ RR   L+ S   A     GP R+ +  R+     +V PL  RE  +L +L  + G
Sbjct: 114 VRALLRRIEQLRSSPALASELRFGPFRLDTVRRELLRGDDVVPLTLREFDLLYFLARHPG 173

Query: 166 KRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +  ++ ++   ++G  FD    E+ V SHI++LR K+ +    DP D +R +
Sbjct: 174 RVFSRGELLQRVWGAAFDG--YEHTVNSHINRLRTKIED----DPRDPRRIV 219


>gi|229828178|ref|ZP_04454247.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
           14600]
 gi|229792772|gb|EEP28886.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
           14600]
          Length = 250

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 11/161 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           ++   Q P+I ++      + +  FD G +D + KP   RE+++R+  + R  K  +N  
Sbjct: 86  VKRDYQTPVIFLTASGDENSVVTGFDLGAEDYIAKPFRPRELVSRIRNVLRHTKRQSNIE 145

Query: 127 ETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
               +RV    GR  + + E   L   E R+L   + NRG+ ++++Q+  A +    + V
Sbjct: 146 RVQDLRVDLDSGRVFKGEQE-LSLSAMEYRLLGIFLENRGRILSRSQLLEAAWDFAGDYV 204

Query: 186 EENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
            +N +  +I +LR+K+ +    DP     + + R LGY ++
Sbjct: 205 NDNTLSVYIKRLREKIES----DPQNPTMIRTVRGLGYRME 241


>gi|218463342|ref|ZP_03503433.1| two-component response regulator protein [Rhizobium etli Kim 5]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + R +RA     P + ++    +   ++  ++G DD + KP    E+LARV A+ RR 
Sbjct: 60  LAIVRSLRAAKVGTPALFLTSIGGVDDRVEGLEAGGDDYLVKPFAFSELLARVNALGRRP 119

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            V   +   +   + +    R+    G++  L  RE  +LE LM   G+ + KT +   +
Sbjct: 120 PVQEQKTVLKVADLELDLIRREARRAGQIIELQPREFTLLEVLMRGEGRVITKTMLLERV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   FD   + +VVE+HIS+LR K+        + + R  GYS+
Sbjct: 180 WDFHFDP--KTSVVETHISRLRAKVDKPFETHLLHTVRNTGYSL 221


>gi|254448586|ref|ZP_05062045.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium HTCC5015]
 gi|198261775|gb|EDY86061.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium HTCC5015]
          Length = 236

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 4/148 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPI 131
           VP+I ++        +   D+G DD V+KP   RE++AR+ A+ RR+  ++ +  E G +
Sbjct: 87  VPVIMLTARTEEDDKIVGLDAGADDYVSKPFSPRELIARIRAVLRRIGSADGQLLEVGGL 146

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +  D            L   E R+L++ M++  +  ++TQ+   ++G     VEE  V+
Sbjct: 147 AMDVDSHRVTYGDSNLDLGPTEYRLLQFFMSHVDRVYSRTQLLDHVWGR-SAFVEERTVD 205

Query: 192 SHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            H+ +LRK L    G D  V + R  GY
Sbjct: 206 VHVLRLRKAL-APYGCDKLVQTVRGAGY 232


>gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 238

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR   ++P++ IS     ++ +  F+ G DD + KP    E+ AR+ +  RR +  
Sbjct: 66  LLRTIRKTHEIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITSHLRRYRRY 125

Query: 123 NNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +T  + V+ +G       +   + G++  L  +E  +L  L  N  +  +K  +  
Sbjct: 126 QGVNDTSKVNVYHNGLSIDFSQKAVHLDGQLLNLTAKEYELLHLLAKNPFETFSKEALLE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            I+   D +   N V  HI  LR KL++
Sbjct: 186 MIWKQEDISA-SNTVTVHIKSLRSKLKD 212


>gi|323693830|ref|ZP_08108022.1| response regulator receiver protein [Clostridium symbiosum
           WAL-14673]
 gi|323502133|gb|EGB18003.1| response regulator receiver protein [Clostridium symbiosum
           WAL-14673]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 11/142 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P I  +    L   ++  D+G DD + KP    E+LAR+ A+ RRL     R E
Sbjct: 68  RRKIQTPAIFSTALDGLNDRINGLDAGADDYIAKPYAIEELLARIRAVTRRL----GRIE 123

Query: 128 TGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 F D       R+   Q     L ++E  +LEY   N G+ + +  I   ++G  
Sbjct: 124 EECTLTFEDLVFLPEHRELRYQNASVSLSKKESSLLEYFFRNPGRTLNREVILGYVWGAS 183

Query: 182 DEAVEENVVESHISKLRKKLRN 203
            E VE+  ++++I  LR++LR 
Sbjct: 184 SE-VEDGNLDNYIYFLRRRLRT 204


>gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 249

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 15/160 (9%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++    +   +     G DD V KP    E++AR+ AI RR     N+ + G +R
Sbjct: 87  TPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHAIENQ-DDGVVR 145

Query: 133 VFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           V     D +   EV+       L   E ++L YLM N G+ V+K QI   ++  +D   +
Sbjct: 146 VADLILDEDAH-EVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHVWE-YDWNGD 203

Query: 187 ENVVESHISKLRKKLRNKLGFD--PV----DSKRFLGYSI 220
             +VES+IS LR+K+    G D  PV     ++R +GY +
Sbjct: 204 AAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243


>gi|291551304|emb|CBL27566.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 231

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 39/243 (16%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DDR +V+   I L  +    L+ ++ +E  E L+   +E+V+ +   ++      
Sbjct: 4   ILVCDDDREIVEAIEIYLSQEGYQILKAYDGIEALEILE---KEEVNLLIIDVM------ 54

Query: 61  LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
             +PR+        IR  + +P+I +S        +   + G DD V KP +  E++ARV
Sbjct: 55  --MPRLDGIRATLKIREKNSLPIIILSAKSEDTDKILGLNIGADDYVTKPFNPLELVARV 112

Query: 113 AAIYRRLKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
            +  RR       A+         G +++  D +   V GE   L   E  IL  LM N+
Sbjct: 113 KSQLRRFNELGGTAQEPKETIYKVGGLQINDDLKQVTVDGEFVKLTPIEYNILLLLMKNQ 172

Query: 165 GKRVAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGY 218
           GK  +  QI+ +I+   +EA+  +N V  HI  +R+K+      +P D +       +GY
Sbjct: 173 GKVFSINQIYESIWN--EEAIGADNTVAVHIRHIREKIE----INPKDPRYLKVVWGVGY 226

Query: 219 SID 221
            I+
Sbjct: 227 KIE 229


>gi|228994221|ref|ZP_04154119.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228765514|gb|EEM14170.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 6/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR +S VP+I ++   +    L   + G DD + KP +   +LAR+  I +R   S
Sbjct: 63  ICREIRKNSDVPIIIVTSRDNEVDELMSMNLGADDFITKPYNTEILLARITNILKRTYGS 122

Query: 123 NNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +       F           + +   L + E +IL YL+ N+G  V +  +   ++ 
Sbjct: 123 SKASNMLSYMDFHLNLSNASVMYKNQAIELTKNEVKILSYLINNKGNIVKREFLMEHLWK 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
             D  V+++ +  +I++LRKKL  ++G  +P++++R LGY
Sbjct: 183 -SDYFVDDSTLTVNITRLRKKLE-EIGIENPIETRRGLGY 220


>gi|224588150|gb|ACN58774.1| DNA-binding response regulator [uncultured bacterium BLR8]
          Length = 239

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 33  EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92
           E E+W+ ++    V  +   L+  G+  LE+ R +R  S   +I ++        L   +
Sbjct: 49  EVEDWVMANG---VELVLLDLMLPGKSGLEVCRGLRTFSNAAIIMVTAKVEEIDRLLGLE 105

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLP 150
            G DD + KP   RE++ARV A+ RR + +   A    G +++        + G+   L 
Sbjct: 106 LGADDYICKPFSPREVVARVKAVLRRSQGAGAAATPRAGGLQLDDSRWKATLDGQDLDLT 165

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDE-AVEENVVESHISKLRKKL 201
             E ++L  L +  G+  ++ Q+  A+Y   DE  V +  V+SH+ KLR+K+
Sbjct: 166 AVEFKLLSVLASQPGRIFSRDQLMDAMY--RDERIVADRTVDSHVKKLRRKI 215


>gi|154483083|ref|ZP_02025531.1| hypothetical protein EUBVEN_00781 [Eubacterium ventriosum ATCC
           27560]
 gi|210610522|ref|ZP_03288448.1| hypothetical protein CLONEX_00638 [Clostridium nexile DSM 1787]
 gi|149736168|gb|EDM52054.1| hypothetical protein EUBVEN_00781 [Eubacterium ventriosum ATCC
           27560]
 gi|210152381|gb|EEA83387.1| hypothetical protein CLONEX_00638 [Clostridium nexile DSM 1787]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 14/161 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  +  P+I +S    +QT +D    G DD + KP    E+LAR+ A  +R   SN   
Sbjct: 67  LRKFTNAPVIVVSAKTMVQTKIDLLKLGADDYMTKPFDLHELLARIEANLKR--TSNTSC 124

Query: 127 ETGPIRVFSDGRDPEVQGE-------VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +      RD E+          +      E +IL  L+    K  +K  ++ +I+ 
Sbjct: 125 QNDTLTY----RDIEINNSLVYIKEVLVSFTSTELKILRLLLQYPQKIFSKQNLYESIWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               A +++ + +HIS +RKK++     D + +   +GY I
Sbjct: 181 -ETYAYDDDTINTHISHIRKKIKAITNEDYIQTIWGIGYKI 220


>gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 14/150 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR   + P+I ++        +   + G DD + KP   +E++AR+ A+ RR  
Sbjct: 65  IDVLKWIRKECETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYN 124

Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V N   +    +  +          +D E++     +P +E  +L YL +N  K   + Q
Sbjct: 125 VENEDKDVLKFKSLTIDINSYIVVYKDNEIK-----MPPKEFELLYYLASNCNKVFTREQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +   ++G +D   +   V+ HI +LR+KL+
Sbjct: 180 LLCEVWG-YDYPGDSRTVDVHIKRLREKLQ 208


>gi|329925314|ref|ZP_08280255.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5]
 gi|328939922|gb|EGG36257.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5]
          Length = 232

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 10/150 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +     +P+  I+    +   +   + G DD + KP   RE++AR+  I RRL 
Sbjct: 63  LDICKKVTTDYNIPIFMITAKSDITDKVLGLEFGADDYITKPFDLREVVARIRTILRRLD 122

Query: 121 VSNNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +N     G          I + ++ R     G    L  +E  +L  +  +RGK   ++
Sbjct: 123 QANQGDREGAPEAVIRFKGIEIVTEERLVRKDGSPVDLTPKEFDLLMTMYGHRGKIYTRS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++   ++G +D   +   V++HI +LRKKL
Sbjct: 183 ELLDLVWG-YDFMGDTRTVDTHIQRLRKKL 211


>gi|312126427|ref|YP_003991301.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776446|gb|ADQ05932.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 224

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           + +  +P++ ++        +  F+ G DD + KP    E++ARV A+ RR ++S ++  
Sbjct: 69  KYYGDIPILMLTVKGETNDKVKGFEVGADDYLVKPFDPIELVARVKALLRRYQISTSQTI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + G + +     +  V  E   LP +E  +L  L +  GK   + Q+   I+G +D   +
Sbjct: 129 KIGELFLNKKTYECRVGEEEILLPPKEFELLFKLASYPGKTFTRDQLIEEIWG-YDYEGD 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  V+ HI +LR+K      F  + + R LGY ++
Sbjct: 188 ERTVDVHIKRLREKFSKYCIF-VIRTIRGLGYRLE 221


>gi|281181543|dbj|BAI57873.1| two-component regulator protein [Escherichia coli SE15]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSTPSPVIHIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126]
 gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
 gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126]
 gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ A +RR  +
Sbjct: 63  EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +        + D +  +VQ        E  PL +RE  +L  L++N  + + + ++ 
Sbjct: 123 EAAKNAPAKASTYRDLK-LDVQNRTVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +D+A+E NVV+ +I  LR K+        + + R +GY I
Sbjct: 182 LQVWK-YDDAIETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYVI 226


>gi|261346014|ref|ZP_05973658.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM
           4541]
 gi|282565899|gb|EFB71434.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM
           4541]
          Length = 224

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D    ++     +  ++  + +  D++ ++  L    E  L
Sbjct: 3   ILIVEDNALLRHHLTVQLKDLSHQVDSAEDAKEADYFLNESHPDIAVVDLGL--PDEDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  R+ H  +P++ ++   S Q  +   +SG DD V KP    E++AR+ A+ RR  
Sbjct: 61  SMIKRWRSNHVTIPILVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E     +    ++  V GE   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKK++     + + + R  GY  D N
Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQFHEQEVIVTVRGQGYRFDVN 223


>gi|218234629|ref|YP_002369621.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218162586|gb|ACK62578.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL Y M N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|86159336|ref|YP_466121.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775847|gb|ABC82684.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 245

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 30/194 (15%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           + R DV  ++  L GK    LE+ R +R+ S VP+I ++        +   + G DD + 
Sbjct: 59  AGRFDVVLLDLMLPGK--DGLEVCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLA 116

Query: 101 KPIHHREILARVAAIYRR-----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           KP   RE+LAR+ A+ RR           ++V     +    RV  DGR+  + G  F L
Sbjct: 117 KPFSPRELLARIRAVVRRATGRAGPPREAVRVGGLVVDPAARRVTLDGREVTLTGYEFAL 176

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
                  L  L    G+ +A+ Q+     G  +EA + + V+ H+S+LR+    KLG DP
Sbjct: 177 -------LHALARRAGRVLAREQLIELAGGSAEEAFDRS-VDVHVSRLRQ----KLGDDP 224

Query: 210 -----VDSKRFLGY 218
                + + R  GY
Sbjct: 225 RRPRLIKTVRGAGY 238


>gi|76811571|ref|YP_333149.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|76581024|gb|ABA50499.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
          Length = 389

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAE 127
           + +P++ +++       ++  ++G DD + KP   RE +ARV A+ RR  +S       E
Sbjct: 230 APLPILVLTNAVLETDLVEALEAGADDYLIKPPREREFVARVNALRRRASISKQFEGTIE 289

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G  R+ +  R   + GE  PL  +E  I+E L  + G+ V +  I S ++G   E    
Sbjct: 290 IGGYRIATVERAVYLAGERIPLSPKEYEIVELLARHVGQVVPRKTIISRVWGRAAEEEVS 349

Query: 188 NVVESHISKLRKKL 201
             +++HI ++R+K+
Sbjct: 350 RSLDTHIYRIRRKM 363


>gi|78066346|ref|YP_369115.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77967091|gb|ABB08471.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 35/221 (15%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60
            +L++D  ++ D   A     G+   G+ +    +W       DV A    L+G G    
Sbjct: 3   ILLVEDDVMLADAVCA-----GLRQNGWRA----DW-----SADVPAARLALVGHGYDAV 48

Query: 61  ---LELP--------RIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
              L+LP          +RA +   P++ ++    L   +   D+G DD + KP    E+
Sbjct: 49  LLDLQLPGASGFTLLAAMRANYDPTPVLIVTARDQLSDRIRGLDAGADDYLVKPFQLDEL 108

Query: 109 LARVAAIYRRLKVSNNRAETGPIR--VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANR 164
            AR+ A+ RR   S  R     I   V  D    EV   GE   L   E R L  LM  +
Sbjct: 109 YARLRALTRR---SQGRVSERLIYRDVHVDPARKEVTRAGEPVALSIHEYRTLLALMERQ 165

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           G+ V +TQ+   +YG  D A+E N +  +I +LR+KL ++L
Sbjct: 166 GRVVTRTQLEERVYG-NDSAIESNTIAVYIHQLRRKLGDEL 205


>gi|332969546|gb|EGK08565.1| subtilin biosynthesis regulatory protein SpaR [Desmospora sp. 8437]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%)

Query: 1   MFVLIDDRALVK--------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           + V+ D+RA+V         +GY  L   DG S+          W   + + D+  ++  
Sbjct: 5   ILVVDDERAMVSMIRDALEDEGYQVLTAYDGESV----------WDLLNRKPDLILLDIM 54

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +   G   +++ R IR     P++ +S    ++  ++    G DD + KP    E++ARV
Sbjct: 55  M--PGLDGIQVCRWIRDSVSCPILFLSARREVEDRIEGLAVGGDDYITKPFSLEELVARV 112

Query: 113 AAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGK 166
           AA  RR   S ++ +T    G  R+  D +  EV+    + P+  +E  ++ +L  + G+
Sbjct: 113 AAHLRRELRSPDQEKTVLRFG--RLLIDLKACEVRYGDRLIPMTAKEFEVIRFLAMHAGQ 170

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPV 210
             ++ QI+  ++G F E  +  V E HI    KK+R KLG  DPV
Sbjct: 171 VFSREQIYEGVWG-FGEGSDATVTE-HI----KKIRAKLGAVDPV 209


>gi|331268651|ref|YP_004395143.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125201|gb|AEB75146.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 219

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR    VP++ ++   S    L   + G DD + KP +   +LAR+ AI +R+  +
Sbjct: 59  ICREIRKQLNVPIVIVTSRDSDMDELMSINLGADDFITKPYNTEILLARIGAILKRVYGN 118

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G     S+G     + E+  + + E +IL +L+ N+G  V++  +   ++
Sbjct: 119 SMNQDILNYEGLKLNLSNGTITYNENEL-EITKNEIKILSFLIKNKGNIVSRESLMDYLW 177

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              D  V++N +  +I++LRKKL   LG  + ++++R LGY
Sbjct: 178 ST-DFFVDDNTLSVNITRLRKKLE-CLGLKNVIETRRGLGY 216


>gi|323359410|ref|YP_004225806.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275781|dbj|BAJ75926.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 244

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  + + VP++ ++   ++   +    +G DD V KP    E++AR+  + RR   +
Sbjct: 80  LQRLRHSGNDVPVLFLTAKDAVADRVAGLTAGGDDYVTKPFSLEEVVARLRGLMRRAGTA 139

Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             R        G + +  D  +    G    L   E  +L +LM N+ + V+K QI   +
Sbjct: 140 LTRDSEPILRVGDLSLNEDSHEVVRGGHEIELTATEFELLRFLMRNQRRVVSKAQILDRV 199

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +  +D     +VVE +IS LRKK+    G DP + + R +GY I
Sbjct: 200 WN-YDFGGRSSVVELYISYLRKKI--DAGHDPLIHTVRGVGYMI 240


>gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407]
 gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407]
 gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC
           H10407]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 9/151 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR  +  +P+I IS   S    +   + G DD + KP   +E++ARV A++RR 
Sbjct: 64  LEICRRIRQMAGYLPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALFRRQ 123

Query: 120 KV--SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    N R E G IR      DP      + GE+  L  RE  +L +   + G+  ++  
Sbjct: 124 EAMGQNIRLEGGLIRCHGLHIDPLAREVRLCGELIDLTPREFDLLYWFARHPGEVFSRLS 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G   E   E+ V +HI++LR K+ +
Sbjct: 184 LLDNVWGYQHEGY-EHTVNTHINRLRTKIEH 213


>gi|229544244|ref|ZP_04433303.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325383|gb|EEN91059.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 230

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 15/163 (9%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R IRAHS VP++ +S  D+P+    +     G DD V KP H   ++A++ AI RR  V 
Sbjct: 65  RQIRAHSHVPILFLSSRDHPT--DMVMAMQLGADDYVQKPFHIDVLIAKIQAILRR--VY 120

Query: 123 NNRAETGPIRVFS----DGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +E   ++ +     D +   V+ E     L + E  IL+ L+  + + V++T +   
Sbjct: 121 AYTSEQTVLKTWCGATIDLQKNTVENEHGCIELSKNEMFILKILVDMKNRIVSRTHLIEC 180

Query: 177 IYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++   DE  V +N +  ++++LRKKL      D +++K   GY
Sbjct: 181 LWD--DERFVSDNTLTVNVNRLRKKLSTIGLGDCIETKVGQGY 221


>gi|228999228|ref|ZP_04158808.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228760425|gb|EEM09391.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 235

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 11/164 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKV 121
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V ++ RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYIAKPFHLDIVMAKVKSVLRRGYGEYA 124

Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+  ++   +R   +F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SSAESDCFGVRGLLLFPSQHTVEWQGKQIELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL      + + +KR  GY++
Sbjct: 183 -LWDELAFVDDNTLTVNVKRVRKKLEELGIVNAIVTKRGYGYAL 225


>gi|156974939|ref|YP_001445846.1| hypothetical protein VIBHAR_02658 [Vibrio harveyi ATCC BAA-1116]
 gi|269963434|ref|ZP_06177761.1| DNA-binding response regulator [Vibrio harveyi 1DA3]
 gi|156526533|gb|ABU71619.1| hypothetical protein VIBHAR_02658 [Vibrio harveyi ATCC BAA-1116]
 gi|269831834|gb|EEZ85966.1| DNA-binding response regulator [Vibrio harveyi 1DA3]
          Length = 219

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 22/217 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L  +G++     DG+  +       EEW        +  ++   + KG        I  
Sbjct: 19  TLENNGWVPELSQDGI--DALYRATSEEWDAIVLDLGLPKLDGLTVLKG--------IRD 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S   +L   ++  ++G DD + KP    E+ AR+ A  RR   S N +  
Sbjct: 69  ENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLRR--ASGNASPV 126

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             I   S D R  +V  QG+   L   E +++ Y M N  K +++T++   IY   FD  
Sbjct: 127 MQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + N +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 186 -DSNTIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|149277685|ref|ZP_01883825.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149231373|gb|EDM36752.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 224

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 2/166 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  LP   + +     + ++   +L+  +   D G DD + KP    E+ +R+ AI 
Sbjct: 57  GDGLSLLPAAKKHNPDAAYVILTARGNLEDRIAGLDLGADDYLAKPFSLLELQSRMQAIA 116

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   +       G   +    R      E   L R+E  +  YL+ ++ + + + Q+  
Sbjct: 117 RRKFNIKEELLRLGDFSIDLQKRVIHCGTEQIELSRKEFDLFSYLLLHQNRVLTRMQLSE 176

Query: 176 AIYGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G F D+  + N +++HI  +RKKL      D +++ R +GY I
Sbjct: 177 HIWGTFADDDYDSNYIDAHIKNIRKKLNVHAPTDFLETVRGVGYRI 222


>gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 248

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 13/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  S +
Sbjct: 67  RRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPSIS 126

Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             ET            G + V ++ R     G+   L   E  +LE L    GK V + +
Sbjct: 127 VTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVPRAE 186

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201
           I   ++G     A +  VV+ ++++LR KL
Sbjct: 187 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 216


>gi|254247838|ref|ZP_04941159.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124872614|gb|EAY64330.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 270

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 9/154 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
            P++ +S    +   +    +G DD + KP    E+ AR+  + RR + S    +T    
Sbjct: 119 TPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQASGVPQQTLLKV 178

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187
           G + +    R      +  PL   E R+LE++M N G+ + +T +F A++G  FD     
Sbjct: 179 GVLELDLISRCARRGTDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEAVWGYHFDPGT-- 236

Query: 188 NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           N+++ H+ +LRKK+ +  G +P + + R  GY +
Sbjct: 237 NLIDVHMGRLRKKI-DPPGANPMIQTVRGSGYML 269


>gi|118595246|ref|ZP_01552593.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylophilales bacterium HTCC2181]
 gi|118441024|gb|EAV47651.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylophilales bacterium HTCC2181]
          Length = 231

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 23/209 (11%)

Query: 28  GFN-----SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGIS 79
           GFN     S EF E +      D+  ++  L   G   +E  + IR  S   ++P+I ++
Sbjct: 26  GFNPIRSLSAEFAEKIIQKNLPDLIILDWML--PGMDGVEFAKRIRGSSTTRKIPIIMLT 83

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-------VSNNRAETGPIR 132
                   L   + G DD + KP   +E++AR+ AI RR         ++ N  E  PI+
Sbjct: 84  AKSEEDNKLKGLNIGADDYMTKPFSPKELIARIKAILRRNAPELVNEPINMNGLELDPIK 143

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
                 D     ++  +   E ++L + M+N     ++ QI   ++G     +++  V+ 
Sbjct: 144 YVLTNND-----KIISIGPTEFKLLNFFMSNPNIAFSRNQILDKVWG-NKSDIDDRTVDV 197

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           HI +LR  L++      + + R LGY ++
Sbjct: 198 HIKRLRDTLKHTGQHSLIKTVRGLGYRLE 226


>gi|52082494|ref|YP_081285.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52787890|ref|YP_093719.1| YtsA [Bacillus licheniformis ATCC 14580]
 gi|319648372|ref|ZP_08002588.1| YtsA protein [Bacillus sp. BT1B_CT2]
 gi|52005705|gb|AAU25647.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52350392|gb|AAU43026.1| YtsA [Bacillus licheniformis ATCC 14580]
 gi|317389451|gb|EFV70262.1| YtsA protein [Bacillus sp. BT1B_CT2]
          Length = 228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 14/146 (9%)

Query: 65  RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           R IR+ S VP++ +S  D+P+ +  ++ F   G DD + KP H   ++A++ AI+RR+  
Sbjct: 65  RQIRSRSNVPILFLSSRDHPADMVMSMQF---GADDYIQKPFHFDVLIAKIQAIFRRVYD 121

Query: 122 SNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N   E           DPE      +     L R E  IL+ L+  + K V++ ++  +
Sbjct: 122 YNTEPEILKKTWCGATVDPEQNRVSNKAGAIELTRNEMFILKQLIDQKNKIVSREELMRS 181

Query: 177 IYGLFDEA-VEENVVESHISKLRKKL 201
           ++   DE  V +N +  ++++LRKKL
Sbjct: 182 LWN--DERFVSDNTLTVNVNRLRKKL 205


>gi|23099970|ref|NP_693436.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22778201|dbj|BAC14471.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 4/136 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           S+  +I ++    +   LD  + G DD + KP H  E++ARV A+ RR+   NN +    
Sbjct: 69  SKCAVIMLTALGDVNYRLDGLNQGADDYIAKPFHGEELVARVQAVLRRIGNKNNNSNVIK 128

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +        + G +  L  R+  +L +   N  +   + Q+  +I+G +D    +
Sbjct: 129 FGTLEIDVVAHRVRLLGTIIELTPRDLSLLLFFADNPNRTFTREQLLDSIWG-WDYDGSD 187

Query: 188 NVVESHISKLRKKLRN 203
             V+  I +LRK L++
Sbjct: 188 RAVDLSIKRLRKSLKD 203


>gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 249

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 15/160 (9%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++    +   +     G DD V KP    E++AR+ AI RR     N+ + G +R
Sbjct: 87  TPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHAIENQ-DDGVVR 145

Query: 133 VFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           V     D +   EV+       L   E ++L YLM N G+ V+K QI   ++  +D   +
Sbjct: 146 VADLVLDEDAH-EVYRSEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHVWE-YDWNGD 203

Query: 187 ENVVESHISKLRKKLRNKLGFD--PV----DSKRFLGYSI 220
             +VES+IS LR+K+    G D  PV     ++R +GY +
Sbjct: 204 AAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243


>gi|300936615|ref|ZP_07151519.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300458196|gb|EFK21689.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|323968214|gb|EGB63623.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323977760|gb|EGB72846.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324114498|gb|EGC08467.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325497900|gb|EGC95759.1| DNA-binding transcriptional regulator BaeR [Escherichia fergusonii
           ECD227]
 gi|327253212|gb|EGE64866.1| transcriptional regulatory protein baeR [Escherichia coli STEC_7v]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 8/154 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|291287384|ref|YP_003504200.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884544|gb|ADD68244.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 234

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 10/180 (5%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89
           N L  E++L+SS     S I   ++       +L + +R +S +P+I +S    ++  + 
Sbjct: 34  NPLMLEKYLKSSKP---SVIILDIMMPHINGFDLCKKLRKNSDIPVIMLSARGEVEDRIA 90

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRA--ETGPIRVFSDGRDPEVQ 143
             ++G DD + KP   RE++AR+ A+ +R +     +NN A  + G + + +D     + 
Sbjct: 91  GLEAGADDYLAKPFEPRELIARIYAVIKRFEHSEDTANNAAVYQYGELSIDTDKYKATMD 150

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           G    L + E  IL  ++ N    +++ ++++ + G FD       V+  +S+LR KL +
Sbjct: 151 GSNLELTKTEFIILSLMVRNPYILLSRDRLYNELTG-FDCDAYNRTVDISVSRLRTKLND 209


>gi|198275196|ref|ZP_03207727.1| hypothetical protein BACPLE_01355 [Bacteroides plebeius DSM 17135]
 gi|198271779|gb|EDY96049.1| hypothetical protein BACPLE_01355 [Bacteroides plebeius DSM 17135]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE    +   + V ++   D  SL+  +   D G DD + KP H  E+ AR+ +
Sbjct: 57  GSGLDLLEELHALGKRTNVIILSAKD--SLEDKVKGLDLGADDYLPKPYHLAELHARLKS 114

Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++RR  +    +   G + V  D     V G+   L R+E  IL Y M   G+ V KT +
Sbjct: 115 LFRRNQREGEKKVSYGNVEVIPDHFKVAVGGKELDLNRKEYDILLYFMLRPGRLVNKTTL 174

Query: 174 FSAIYGLFDEAVEE-NVVESHISKLRKKLR 202
             +++G   + V+  + + + I  LRK L+
Sbjct: 175 AESVWGDHIDQVDNFDFIYAQIKNLRKHLK 204


>gi|49484305|ref|YP_041529.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|82751682|ref|YP_417423.1| two component sensor protein [Staphylococcus aureus RF122]
 gi|257426219|ref|ZP_05602634.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428877|ref|ZP_05605271.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431486|ref|ZP_05607859.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434196|ref|ZP_05610546.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257437109|ref|ZP_05613149.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|258422919|ref|ZP_05685819.1| two component sensor protein [Staphylococcus aureus A9635]
 gi|282904747|ref|ZP_06312621.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906425|ref|ZP_06314276.1| two-component system OmpR family KDP operon response regulator KdpE
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909393|ref|ZP_06317208.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911646|ref|ZP_06319445.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914926|ref|ZP_06322706.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus M899]
 gi|282917429|ref|ZP_06325182.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus D139]
 gi|282920257|ref|ZP_06327981.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus C427]
 gi|282925468|ref|ZP_06333122.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus C101]
 gi|283958859|ref|ZP_06376304.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293508998|ref|ZP_06667785.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510910|ref|ZP_06669609.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus M809]
 gi|293547512|ref|ZP_06672187.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428667|ref|ZP_06821293.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297589856|ref|ZP_06948496.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49242434|emb|CAG41148.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|82657213|emb|CAI81653.1| two component sensor protein [Staphylococcus aureus RF122]
 gi|257270924|gb|EEV03097.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274219|gb|EEV05736.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277727|gb|EEV08397.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257280835|gb|EEV10980.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283502|gb|EEV13629.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257846943|gb|EEV70957.1| two component sensor protein [Staphylococcus aureus A9635]
 gi|282312869|gb|EFB43270.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus C101]
 gi|282316117|gb|EFB46498.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus C427]
 gi|282318631|gb|EFB48988.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus D139]
 gi|282321129|gb|EFB51460.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324411|gb|EFB54724.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326663|gb|EFB56961.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330375|gb|EFB59893.1| two-component system OmpR family KDP operon response regulator KdpE
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594780|gb|EFB99757.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus C160]
 gi|283789577|gb|EFC28400.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919632|gb|EFD96705.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094702|gb|EFE24974.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466195|gb|EFF08722.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus M809]
 gi|295127337|gb|EFG56977.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576984|gb|EFH95698.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus MN8]
 gi|302333726|gb|ADL23919.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312437506|gb|ADQ76577.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315193239|gb|EFU23637.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 231

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 17/200 (8%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRA 69
           D  I    D  ++L+ +N    E   Q+  +  +   +  L+  G   +  L L   IR 
Sbjct: 11  DHAITHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
           H+ +P+I IS     QT +   D+G +D + KP +  E+ AR+  I R   ++ +  ET 
Sbjct: 71  HTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER---IAKSHQETN 127

Query: 130 PIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              VF++G        +   +  +   L   E  +LE L  ++GK +    I   IYG  
Sbjct: 128 I--VFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGYV 185

Query: 182 DEAVEENVVESHISKLRKKL 201
           ++  E   +  H++ LR+KL
Sbjct: 186 NKT-EMPSLRVHMTSLRQKL 204


>gi|256839706|ref|ZP_05545215.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|256738636|gb|EEU51961.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
          Length = 228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 11/149 (7%)

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ RI+R     +  P+I ++   +    L  F+ G DD ++KP   R+++ARV A+ RR
Sbjct: 63  KMARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLRR 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +   E   +   +   D +     V G   PL ++E  IL+ L+ N+G   ++ +I
Sbjct: 123 TSEKSKEKEIEKLEYETLALDTKRIKATVDGVEVPLTKKEFEILKLLLENKGNVFSREEI 182

Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKL 201
            S I+   DE  V +  ++ +I++LRKK+
Sbjct: 183 LSRIWK--DEVYVLDRTIDVNITRLRKKI 209


>gi|228932078|ref|ZP_04094970.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827661|gb|EEM73403.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 242

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 135

Query: 122 SNNRAETGPIRV-FSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     + +++ R    V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 136 TNQHAQIQYHGILWNEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 237


>gi|227431100|ref|ZP_03913158.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353140|gb|EEJ43308.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R   + P+I ++   S+   +   D G DD + KP    E+LAR+ ++ RR+ 
Sbjct: 61  LEVARRLREVKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIT 120

Query: 121 V---SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   +N++  +      +R+  + R      ++  L +RE  +L  L+ N     ++ Q+
Sbjct: 121 IETETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G F+  VE NVV+ +I  LR K+
Sbjct: 181 LKEVWG-FNSEVETNVVDVYIRYLRNKI 207


>gi|255280860|ref|ZP_05345415.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
 gi|255268797|gb|EET62002.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
          Length = 232

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 41/228 (17%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDV--SAIEAFLIGKGEKVLELPRII 67
           L  +GY  +   DGV  EG +  +F E        DV    I+ F       VLEL   I
Sbjct: 21  LCGNGYGVVLAGDGV--EGIH--KFHEHTCDLVLLDVMLPKIDGF------GVLEL---I 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------- 118
           R  S+VP++ ++     +  +   D   DD + KP   + +L ++AA+ RR         
Sbjct: 68  RRESEVPVMMLTALEEEEYQIRGLDLKADDYITKPFSVQVLLRKIAAVLRRANRDAGQEQ 127

Query: 119 LKVSNNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   N R +     V+      D  +PE       L ++E  +L  L+ N+G  + + ++
Sbjct: 128 IVYKNLRLDPAGHHVYVGQENGDITEPE-------LTQKEFELLHVLLINKGIVLTRQKL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++G  D   EE +V++HI  LRK    KLG   + + R +GY ID
Sbjct: 181 LNLVWG-EDYFGEERIVDTHIKNLRK----KLGPGCISTIRGVGYRID 223


>gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 230

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 6/113 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-----ETGPIRVFSDGRDPEVQGEVFP 148
           G DD + KP   RE++ARV AI RR +           + G +R+  +  +   + +   
Sbjct: 96  GADDYITKPFSPREVVARVKAILRRAETKTEEETAEAIKVGDLRILPEQFEAYFKEKKLE 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L  +E  +L YL  + GK +++ Q+ +A++  FD A +  +V+ HIS LR+K+
Sbjct: 156 LTPKEFELLLYLANHAGKVLSRDQLLNAVWN-FDFAGDTRIVDVHISHLREKM 207


>gi|126699566|ref|YP_001088463.1| two-component response regulator [Clostridium difficile 630]
 gi|255101086|ref|ZP_05330063.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306951|ref|ZP_05351122.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115251003|emb|CAJ68832.1| Two-component response regulator [Clostridium difficile]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 34/237 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLI-GKGE 58
            ++I+D   + +G    F +DG ++  F +   +E L   +S   D   ++  L  G G 
Sbjct: 3   LLIIEDDINLNEGLFYAFENDGFNV--FKAYTKQEGLNIFNSKNIDFIILDCNLPDGDG- 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              ++ +IIR  S +P+I ++   S    +   + G+DD + KP     + ARV    R 
Sbjct: 60  --FDVCQIIREKSDIPIIMLTARDSEIDEVKGLEIGLDDYITKPFSLSVLKARVKVAIR- 116

Query: 119 LKVSNNRAETGPIRVFSDG--RDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKT 171
            K SNN+       ++S+G   D ++       E   L   E ++L YL+ N+G+ + K 
Sbjct: 117 -KKSNNKV------IYSNGIKLDQKLLKVYKNKECLELSSVEYKLLSYLIENKGQILLKE 169

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223
           QI   I+   +  V++N+V  +I +LR K+ +    DP + K       +GY   WN
Sbjct: 170 QILHHIWDSEENYVDDNIVSVNIRRLRVKVED----DPSNPKYIKTAYGMGYL--WN 220


>gi|86609935|ref|YP_478697.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558477|gb|ABD03434.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 233

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 68/133 (51%), Gaps = 4/133 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+ +     P++ ++   +L   ++  D+G DD + KP   RE+LARV A+ RR   +  
Sbjct: 69  RVRQVDCTTPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRTTGTGE 128

Query: 125 ---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R + G + +  + +    QG +  L ++E R+LEY M + G+ +   QI+  ++   
Sbjct: 129 GIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMTHPGQLLTHDQIYEQVWA-G 187

Query: 182 DEAVEENVVESHI 194
           ++    NV+ + +
Sbjct: 188 EDPPSSNVLAAQV 200


>gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 248

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 40  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 88

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   +  R  
Sbjct: 89  RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPAFTRLT 148

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 149 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 206

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + R +GY +
Sbjct: 207 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|150388920|ref|YP_001318969.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948782|gb|ABR47310.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 6/145 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S VP++ ++        +   D G DD + KP   +E++ARV AI RR   
Sbjct: 66  EICNRIRLQSDVPILMLTAKVEETDQIHGLDIGADDYMTKPFSPKELMARVRAIMRRTSN 125

Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              RA       G ++V   G +   +GE+  L   E ++L   + N GK  ++ ++   
Sbjct: 126 EGVRAHLIELNGGDLKVDIRGMETRKKGELMDLTATEFKLLSIFIQNSGKVFSREELVLK 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           + G +D    +  ++ HI  +R K+
Sbjct: 186 VLG-YDYVGYDRTIDVHIKNVRHKI 209


>gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 787

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 12/153 (7%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIR 132
           P++ I+        +   D+G DD + KP++ RE+ ARV A+ RR         E G +R
Sbjct: 74  PILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGDTPRPPVLEVGALR 133

Query: 133 VFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           +     DP +       +V  L  +E  +LE L+ N  +  ++  I   ++  FD+  +E
Sbjct: 134 L-----DPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLW-TFDDPPQE 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V+SHI  LR KL+     D +++   LGY +
Sbjct: 188 ETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRL 220



 Score = 37.0 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 13/146 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSARED-VSAIEAFLIGKGEKV 60
           +++DD  L+      +    G+ + G +  L F E LQS+A +  +  +E   I      
Sbjct: 503 LVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISG---- 558

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL + +R   Q   +P++ ++ +  ++T    F +G DD V KP+   E+LAR+     
Sbjct: 559 IELCQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLE 618

Query: 118 RLK----VSNNRAETGPIRVFSDGRD 139
           R +    +S     TG    F   RD
Sbjct: 619 RSRLLQSLSTKDPLTGLANQFQSSRD 644


>gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA   + P++ ++    + + +   D G DD ++KP    E+LAR+ A+ RR     
Sbjct: 64  RELRAEGVKTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRSHEQI 123

Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LF 181
           +   T G IR+ ++ R   +  +   L  +E  +LE+L  NR + +++  +   ++G  F
Sbjct: 124 SPVLTIGNIRLDTNTRIVTLDNQPVSLTPKEFSLLEFLFYNRNRAISRFTMAEHVWGDAF 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206
           D     N ++ HI  +RKKL ++ G
Sbjct: 184 DPFTMSNNIDVHIKNVRKKLNDQGG 208


>gi|218699328|ref|YP_002406957.1| DNA-binding transcriptional regulator BaeR [Escherichia coli IAI39]
 gi|218369314|emb|CAR17072.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli IAI39]
          Length = 240

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 8/154 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|325663231|ref|ZP_08151681.1| hypothetical protein HMPREF0490_02422 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470685|gb|EGC73915.1| hypothetical protein HMPREF0490_02422 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 221

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 14/161 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  +  P+I +S    +QT +D    G DD + KP    E+LAR+ A  +R   SN   
Sbjct: 67  LRKFTNAPVIVVSAKTMVQTKIDLLKLGADDYMTKPFDLHELLARIEANLKR--TSNTSC 124

Query: 127 ETGPIRVFSDGRDPEVQGE-------VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +      RD E+          +      E +IL  L+    K  +K  ++ +I+ 
Sbjct: 125 QNDTLTY----RDIEINNSLVYIKEVLVSFTSTELKILRLLLQYPQKIFSKQNLYESIWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               A +++ + +HIS +RKK++     D + +   +GY I
Sbjct: 181 -ETYAYDDDTINTHISHIRKKIKAITNEDYIQTIWGIGYKI 220


>gi|313904570|ref|ZP_07837945.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470540|gb|EFR65867.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 243

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 12/148 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYRRL-K 120
           R IR  S VP++ +++    +  +  F +G DD + KP    E+  R+ A    YR+  +
Sbjct: 72  RKIRDFSDVPVLFLTEKAPEEEKIMGFHAGADDYIEKPCSFSELYMRIMANVRWYRKTQQ 131

Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   + E G       P+    D R     G+   L  RE  +L YLM N  K V+   I
Sbjct: 132 LEQKQKEAGKLTISVPPLVAELDRRMITCDGQEVQLSNREYELLLYLMQNTEKPVSFEDI 191

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            + ++G++ E+  ++++  +IS+LRKKL
Sbjct: 192 GTKLFGIYQESDRQSLM-VYISRLRKKL 218


>gi|255034386|ref|YP_003085007.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254947142|gb|ACT91842.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 231

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 8/152 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-----RLKVSNNRAE 127
           +P+I ++ Y  ++  ++   +G  D + KP   RE++AR+ A  R     RL   N    
Sbjct: 77  LPVIMLTAYGEIEDKVEGLGNGATDYIVKPFDSRELVARIHAALRLSDAGRLDAGNRVLG 136

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              +++  D +     G+   L  +E  +LEY + N G  ++K  +   I+ L FD    
Sbjct: 137 IADLQLNVDTKVVTRAGKFIGLTAKEFALLEYFLLNPGTVISKMDLVKNIWHLNFDPGT- 195

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            N VE +I+ LRKK+        + ++  LGY
Sbjct: 196 -NFVEVYINYLRKKIDKGFDVKLIQTRPGLGY 226


>gi|328948475|ref|YP_004365812.1| transcriptional regulator [Treponema succinifaciens DSM 2489]
 gi|328448799|gb|AEB14515.1| two component transcriptional regulator, winged helix family
           [Treponema succinifaciens DSM 2489]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 8/166 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ +I+RA    VP++ +S+ PS+   ++  DSG DD + +P+   E LAR+ A+ RR 
Sbjct: 60  LEVVKILRAKKNFVPVLLMSENPSVDEIVEGLDSGADDYIRRPVSFEEFLARIKALTRR- 118

Query: 120 KVSNNRAETGPIRVF-SDGRDPEVQ---GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                ++ T  I  F  D    E+Q   GE   +  +E  IL  L     + V K  I  
Sbjct: 119 -KGEFKSSTVSIGNFLLDKNSCEIQNSSGESMKISLKELLILTLLFEFPHQVVKKELIIE 177

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G  + A E N VE +IS +RKK+        + + R +GYS++
Sbjct: 178 KIWG-GNSAAEYNNVEVYISFIRKKMEQLNVNARIRTARGIGYSLE 222


>gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20]
 gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 24/222 (10%)

Query: 18  LFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAF-----------LIGKGEKVLELP 64
           L  DD  SL       LE E +  +   +   A++AF           L+  G   +E+ 
Sbjct: 6   LVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVNPDLVLLDLMLPGLDGVEIC 65

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SN 123
           R+IR+ S VP+I ++     Q  +   ++G DD V KP   +E+LARV+   RR    + 
Sbjct: 66  RLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNPGAA 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G + +   G   +    V  L   E  +L  L  +  K   + ++ S ++G +  
Sbjct: 126 EHVRAGDLDIDVAGHQVKRGESVISLTPLEFELLVTLARSPWKVFTREELLSQVWG-YQH 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
             +  +V  H+ +LR K+      DP     V + R +GY +
Sbjct: 185 PADTRLVNVHVQRLRAKIEK----DPERPSIVVTVRGVGYRV 222


>gi|289551804|ref|YP_003472708.1| predicted transcriptional regulator [Staphylococcus lugdunensis
           HKU09-01]
 gi|289181335|gb|ADC88580.1| predicted transcriptional regulator [Staphylococcus lugdunensis
           HKU09-01]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 24/207 (11%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEW-----LQSSAREDVSAIEA-----FLIG------KG 57
           GY AL  +D + +    SL   +      L  S +E +  +E       L+        G
Sbjct: 2   GYHALIIEDDIDIAHILSLTLTKMHIKTTLNFSGQEAIETLEKDQFDLILLDLMLPEVSG 61

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E+VL     I+AH+   ++ IS    ++  +    SG DD + KP   +E+ AR+    R
Sbjct: 62  EEVLSY---IKAHANSRVVVISAKTDVEEKVRLLSSGADDYLTKPFDTKELAARIDVQLR 118

Query: 118 RLKVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            L+    + +    R  +     R  +V+ +V  +   E  IL   M    + ++K +I+
Sbjct: 119 NLQQMPRQGDILTWRNLTIDKQTRKVQVKNQVLNVTNTEYDILCLFMLTPEQPISKQKIY 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             I G++    ++N V  HIS +RKKL
Sbjct: 179 ENIQGIY--LGDDNTVNVHISNIRKKL 203


>gi|239930478|ref|ZP_04687431.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438839|ref|ZP_06578229.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341734|gb|EFE68690.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 5/144 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 59  EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 119 PEEAAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G  D   +   ++ H+ +LR K+
Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKI 201


>gi|229028450|ref|ZP_04184572.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732899|gb|EEL83759.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220


>gi|218658341|ref|ZP_03514271.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli IE4771]
          Length = 222

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 3/152 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           ++P+I ++        +    +G DD V KP    E++ARV A+ RR +  V ++  + G
Sbjct: 71  RLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRARPEVLSSVLKCG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +  +      +     L   E R+LE+LM++ G+  +++Q+   ++G  D  V+E  
Sbjct: 131 DIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVWG-HDIYVDERT 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           V+ H+ +LRK L      D + + R  GYS++
Sbjct: 190 VDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 221


>gi|251797032|ref|YP_003011763.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544658|gb|ACT01677.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 216

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 100/202 (49%), Gaps = 20/202 (9%)

Query: 27  EGFNSL---EFEEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           EGFN L   + EE L+      V  A+  +++ K   V E+ + I+  S+  ++ ++   
Sbjct: 23  EGFNVLTAGDGEEALEMFYEHQVDLAVLDWMMPKVSGV-EVCKEIKKVSRTKVLLLTAKG 81

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAETGPIRVFSDGRD 139
             +  L   ++G DD V KP   R ++AR   +     +L+  +   +    +++ DG D
Sbjct: 82  EPEDELYALNAGADDYVRKPFDPRVLIARACKLLNWASQLRSGDLVVDMEAQKIYRDGSD 141

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
            +   + F L       ++YL+ N+G+ V +  +   ++G FD   ++  V++HI    +
Sbjct: 142 VQATSKEFQL-------MKYLIQNKGQIVPRKMLLDQVWG-FDYYGDDRTVDTHI----R 189

Query: 200 KLRNKLGFDPVDSKRFLGYSID 221
           +LR K+G   + + R LGYS++
Sbjct: 190 RLREKIGETRIKTFRGLGYSLE 211


>gi|163761469|ref|ZP_02168542.1| two component transcriptional regulator, winged helix family
           protein [Hoeflea phototrophica DFL-43]
 gi|162281313|gb|EDQ31611.1| two component transcriptional regulator, winged helix family
           protein [Hoeflea phototrophica DFL-43]
          Length = 226

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 6/188 (3%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           E W         +AI    +   + +  L R   A    P++ ++   +    ++  DSG
Sbjct: 38  EAWFLGDTETYAAAILDLGLPGMDGLAVLKRWRAAGRDFPVLVLTARGTWSERVEGIDSG 97

Query: 95  VDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
            DD + KP    E+LAR+ AI RR   ++N     G I + +      V G    L  +E
Sbjct: 98  ADDYLPKPFRMEEMLARLRAIIRRSGGLANPVVSVGDIELDTRQMRLSVAGVPVSLSPQE 157

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            R++ YLM N+G+ V + ++   +  +  E  E N VE  + ++R+KL   L    + ++
Sbjct: 158 YRLVAYLMLNKGRVVPQQELSEHLQSVHFER-ESNAVEVLVGRVRRKLPANL----ITTR 212

Query: 214 RFLGYSID 221
           R  GY ++
Sbjct: 213 RGFGYIVE 220


>gi|149912687|ref|ZP_01901221.1| DNA-binding response regulator [Roseobacter sp. AzwK-3b]
 gi|149813093|gb|EDM72919.1| DNA-binding response regulator [Roseobacter sp. AzwK-3b]
          Length = 250

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 36/241 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60
            +LI+D A V D     F   G+  EG+      +W+++  R  ++A E F  G   +  
Sbjct: 3   ILLIEDDARVAD-----FVMRGLQAEGYGV----QWVRT-GRAGLAAAETFSRGCASQQS 52

Query: 61  ---------------LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
                          L L +++R     VP++ +S        +D    G DD + KP  
Sbjct: 53  AAVVILDVLLPELDGLTLCQMLRQRGHHVPVLMLSAMGESHERVDGLRRGADDYLTKPFD 112

Query: 105 HREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMA 162
             E+LAR+ A+ RR +       T    +  D + P ++  G    L  RE  ++E L+A
Sbjct: 113 FDELLARIEALMRRGRTPAAAKSTSIGTITLDRQLPGLRSAGIETILSAREMALMELLVA 172

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP---VDSKRFLGYS 219
             G  V++ +I S ++   D     N+V+ ++S+LR+K+   +  DP   + + R LGY 
Sbjct: 173 ANGATVSRERILSRVWQ-ADRDPLTNIVDVYVSRLRRKI---VRLDPDVAITAVRGLGYR 228

Query: 220 I 220
           I
Sbjct: 229 I 229


>gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 234

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 107/210 (50%), Gaps = 16/210 (7%)

Query: 13  DGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           +GY      DG+S L+ F   E +E+L      DV  ++ ++I K + +  L R+ +  +
Sbjct: 37  EGYNVFSAADGMSGLKIFE--EKQEYL------DVVLLD-WMIPKLDGLEVLRRMKKMTN 87

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           +VP+I ++    +   +   D+G DD + KP +  E++AR+  I+R+          G +
Sbjct: 88  KVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIFRK-NTQPAIYSYGTV 146

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +       E Q +   L +RE  +L +L  ++G+ +++  I   ++G+ +   + N V+
Sbjct: 147 SLNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEIISRDDILEEVWGM-NFGGQLNTVD 205

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +++  LRKKL   +    +++ R LGY ++
Sbjct: 206 TYVRYLRKKLDKNM----IETIRGLGYRLN 231


>gi|327404293|ref|YP_004345131.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327319801|gb|AEA44293.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 10/133 (7%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVF 147
           F++G DD + KPI  R ++++V A+ RR    N      +T  I V  +     +  E  
Sbjct: 99  FEAGADDYITKPIRPRLLVSKVEALLRRAGRMNGGEPEIKTSSITVNREKFLVYMNEEEI 158

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLG 206
            LP++E  ++E L +  GK   + QI + ++G  DE  V E  ++ HI    +KLR KLG
Sbjct: 159 QLPKKEFELIELLASRPGKVFTREQILTTVWG--DETIVGERTIDVHI----RKLREKLG 212

Query: 207 FDPVDSKRFLGYS 219
              + + + +GY+
Sbjct: 213 ESYIRTIKGVGYT 225


>gi|323496680|ref|ZP_08101731.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
 gi|323318262|gb|EGA71222.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
          Length = 219

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P+I +S   +L   ++  ++G DD   KP    E++AR+ A  RR   S N +    I 
Sbjct: 73  TPVIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRR--ASGNASPVIQIG 130

Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
             S D R  +V  QG+   L   E +++ Y M N  K +++T++   IY   FD   + N
Sbjct: 131 NLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHNPEKVISRTELVEHIYKQDFDR--DSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 189 TIEVFIGRIRKKIAPKV----IKTVRGLGYQLN 217


>gi|313682592|ref|YP_004060330.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155452|gb|ADR34130.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 9/152 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G    ++ ++I++   +P+I  S    +   +  +D G DD ++KP   RE++ R+
Sbjct: 56  LMLPGMDGFDVAKMIKSQLDIPIIISSARTDIGNKIYGYDLGADDYLDKPYEPRELVLRI 115

Query: 113 AAIYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVA 169
            A+ RR    N       +  F+ D  +  V  E +P  L R E  I   L+ NRGK ++
Sbjct: 116 EAVLRRYGRKNELV----VSDFTIDETNKTVMMEGYPIDLTRIEFDIFILLIKNRGKNLS 171

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + QI  ++ GL DE ++   V+ HIS +R K+
Sbjct: 172 RDQIIGSL-GLEDE-MKHRTVDMHISNIRLKI 201


>gi|326790543|ref|YP_004308364.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541307|gb|ADZ83166.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 7/145 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S V +  I+   +L + +D FD G D+ + KPI  RE++ARV A+  R + 
Sbjct: 61  EICAEMRQVSNVHIFMITAKGTLDSKIDGFDRGADEYLVKPISPREVVARVKALDTRKQR 120

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N+     + G  ++F   R  ++  E   L   E  +L  L +  G+  ++ Q+  A+
Sbjct: 121 EENKEMLVFDKGHFKIFLQERIVQINNEEITLTPNEFDLLYELASAPGRVFSRDQLIEAV 180

Query: 178 YGL-FDEAVEENVVESHISKLRKKL 201
            G+ FD    +  ++ HI  LRKK+
Sbjct: 181 MGIDFDGF--DRTIDVHIKNLRKKI 203


>gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 246

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 20/207 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +   A+ A             ++   + +  L R+ R    VP++ +
Sbjct: 39  ALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVMLPDMDGLTVLGRLRREAPDVPVLFL 98

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134
           +   +++  +    +G DD V KP    E++AR+  + RR   +  R+E+    G + + 
Sbjct: 99  TARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGTAVARSESTLVVGDLVLD 158

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +     +   L   E  +L +LM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 159 EDSHEVSRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDRVWN-YDFGGQANVVELYI 217

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           S LRKK+    G  P + ++R  GY I
Sbjct: 218 SYLRKKI--DAGRSPMIHTRRGAGYLI 242


>gi|323530311|ref|YP_004232463.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323387313|gb|ADX59403.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 336

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--- 121
           R   A  + PLI +      +     FD+G DDVV  P+  RE++ RV     R+++   
Sbjct: 66  RACYADRRAPLIVVGAGHDREAIARLFDAGADDVVLSPVDAREVMLRVHLALLRVQLQSA 125

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++  E G  R+        V  +   L  RE  I   L + RG+ V++ QI  A++  
Sbjct: 126 DSSDTLECGAYRLDRRTCTVHVDSQAVRLTPREFAIAWLLFSRRGEYVSRRQIAGAVWSR 185

Query: 181 FDEAVEENVVESHISKLRKKL 201
            ++ +    +E HI KLRKKL
Sbjct: 186 SEDIIGRT-LEQHIYKLRKKL 205


>gi|259501700|ref|ZP_05744602.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|309805665|ref|ZP_07699706.1| putative response regulator protein GraR [Lactobacillus iners
           LactinV 09V1-c]
 gi|315653765|ref|ZP_07906685.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|325911747|ref|ZP_08174154.1| putative response regulator protein GraR [Lactobacillus iners UPII
           143-D]
 gi|259166985|gb|EEW51480.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|308165025|gb|EFO67267.1| putative response regulator protein GraR [Lactobacillus iners
           LactinV 09V1-c]
 gi|315489127|gb|EFU78769.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|325476513|gb|EGC79672.1| putative response regulator protein GraR [Lactobacillus iners UPII
           143-D]
          Length = 222

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I I+ +      +     G D+ + KPI     +A++ A+ RR    KV +
Sbjct: 66  IRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYDYKVGS 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G +++     + E +  V  L R E  ILE L  N   ++AK +         D 
Sbjct: 126 DSIMYGDLKLNLSVANLEGKNFVLELTRTELLILEILF-NFKNKIAKREAIINYCWQGDA 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            +++N +  +I++LRKKL+  +G+D  + +K+ +GY
Sbjct: 185 FIDDNTLAVNIARLRKKLKT-VGYDELIQTKKGIGY 219


>gi|154499881|ref|ZP_02037919.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC
           29799]
 gi|150271479|gb|EDM98736.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC
           29799]
          Length = 225

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 5/184 (2%)

Query: 41  SAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           +++ DV  ++  L G  G +V+   R+  AH+  P++ ++        +   D G DD +
Sbjct: 42  TSQYDVIVLDVMLPGLNGFEVVR--RLRSAHNSTPVLMLTAKDETADKVTGLDCGADDYM 99

Query: 100 NKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
            KP    E++AR+ A+ RR  +V         + +    R      +   L  +E  +++
Sbjct: 100 TKPFDPEELMARIRALTRRQGEVLGETMSVADLTLTLSTRSLSRGEKSVRLGFKEFEVMK 159

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            L+AN    V K  I + ++GL  +A E+N VE ++S LRKKL        + + R +GY
Sbjct: 160 LLLANSSAVVPKDDIITRVWGLESDA-EDNNVEVYVSFLRKKLAFLDSVVQIRTMRKVGY 218

Query: 219 SIDW 222
            +++
Sbjct: 219 FLEY 222


>gi|86356934|ref|YP_468826.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281036|gb|ABC90099.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 251

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 5/156 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R     P++ +S    +   +    +G DD + KP    E+LARV  + RR         
Sbjct: 94  RKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDVV 153

Query: 128 TGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
                +  D    EV+  G+  PL  RE R+LEYLM N G+ V +T +   ++   FD  
Sbjct: 154 YRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 212

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + NV++ H+S+LR K+        + + R  GY I
Sbjct: 213 -QTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 247


>gi|328914028|gb|AEB65624.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens
           LL3]
          Length = 229

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 19/200 (9%)

Query: 39  QSSAREDVSAI-EAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISDYPSLQT 86
           Q+ A  D +A+ + FL  K + VL    LP        R IR HS  P+I IS       
Sbjct: 27  QTVAAADFTAVLDVFLQEKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISARSGEMD 86

Query: 87  TLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDGRDP 140
            +   ++G DD + KP  +  +LA++ +  RR       K      E   +++F +  + 
Sbjct: 87  QVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVLEYAGVQLFVERFEL 146

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
             Q E   L ++E ++LE L+    K   + ++    +   D  V++N +  +I++LRKK
Sbjct: 147 RFQDEKSELSKKESKLLEVLLERGEKVTGRDRLMEKTWDT-DIFVDDNTLNVYITRLRKK 205

Query: 201 LRNKLGFDPVDSKRFLGYSI 220
           LR       ++S R +GY +
Sbjct: 206 LRELNAPVSIESVRGVGYQL 225


>gi|307545687|ref|YP_003898166.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307217711|emb|CBV42981.1| two component transcriptional regulator, winged helix family
           [Halomonas elongata DSM 2581]
          Length = 241

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 94/201 (46%), Gaps = 21/201 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L + GY AL  +D  +L           L ++ R D+  ++  L   G+    + R +R 
Sbjct: 25  LTRHGYRALMAEDAEALRA---------LLATERPDLLVVDLML--PGDDGFAICREVRR 73

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
            S+VP+I ++  P     +   + G DD + KP + RE+LARV A+ RR +   + A +G
Sbjct: 74  DSEVPIIMLTASPDETDRILGLELGADDYLGKPFNPRELLARVKAVLRRCRPRGDSAGSG 133

Query: 130 PIRV--FSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             R+  F D R   V  E+         L   +  +L+  + +  + +++  +F    G 
Sbjct: 134 MARIVAFGDWRLDRVTRELIDERGMRSALSGADFSLLQVFLEHAEQVLSREALFDLTRGR 193

Query: 181 FDEAVEENVVESHISKLRKKL 201
               ++ + ++ H+ +LR++L
Sbjct: 194 PAPPLDRS-IDVHVCRLRQRL 213


>gi|302191092|ref|ZP_07267346.1| two component transcriptional regulator, winged helix family
           protein [Lactobacillus iners AB-1]
          Length = 228

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I I+ +      +     G D+ + KPI     +A++ A+ RR    KV +
Sbjct: 72  IRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYDYKVGS 131

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G +++     + E +  V  L R E  ILE L  N   ++AK +         D 
Sbjct: 132 DSIMYGDLKLNLSVANLEGKNFVLELTRTELLILEILF-NFKNKIAKREAIINYCWQGDA 190

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            +++N +  +I++LRKKL+  +G+D  + +K+ +GY
Sbjct: 191 FIDDNTLAVNIARLRKKLKT-VGYDELIQTKKGIGY 225


>gi|295090183|emb|CBK76290.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 230

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 6/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + IR   Q P+I ++        +     G DD + KP    E++ARV A  RR K
Sbjct: 62  FELCQKIREKYQYPVIMLTAKGEGIDKITGLTLGADDYITKPFLPLEMVARVKAQLRRYK 121

Query: 121 VSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N+  +T  +  +S         +  + G+   L   E  IL  L   +G+ V+  ++F
Sbjct: 122 HYNSGTQTDDVITYSGLVINTKTHECTLNGKALSLTPTEFSILRILCQKKGEVVSSEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             I+G    +   N +  HI  LRKK+
Sbjct: 182 HEIWGDEYFSKSNNTITVHIRHLRKKM 208


>gi|291533552|emb|CBL06665.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Megamonas hypermegale
           ART12/1]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 6/144 (4%)

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +E  +IIR    + P+I ++    +   +   D+G DD + KP    E+LAR+ ++ RR 
Sbjct: 60  IEALKIIRQKGNLSPVIMLTAKSEIDDRITGLDAGADDYLMKPFSVGELLARIRSLTRRN 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S      G + +  + ++   +  +  L  +E ++++  M N  K ++   IFSAI+
Sbjct: 120 TQFSPLTLSAGSVHLNIEEQNLSCKNSI-SLNHKETKLMKLFMTNMDKSLSTNHIFSAIW 178

Query: 179 GLFDEA-VEENVVESHISKLRKKL 201
              DE   +EN+V  +IS LR+KL
Sbjct: 179 A--DEIDADENIVWIYISYLREKL 200


>gi|170755580|ref|YP_001780537.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120792|gb|ACA44628.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 223

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 15/214 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L K+GY ++   DG           +  L    RE +  I + ++        L ++IR
Sbjct: 20  VLNKNGYKSIEAKDG-----------DSALDILYREYIDLIISDIMMPNMDGYTLTKLIR 68

Query: 69  -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
            +++ VP++ I+   +     + F  G DD + KPI   E++ RV A+ RR ++ N R  
Sbjct: 69  ESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQIINERKI 128

Query: 128 TGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
                 F  D    +   +   LP++E  ++  L++   K   + Q+   I+G+  E  +
Sbjct: 129 VISETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGIESET-D 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V+ HI++LR + ++   F+ + + R LGY +
Sbjct: 188 PRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220


>gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 263

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 18/200 (9%)

Query: 27  EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---HSQVPLIGISD 80
           EG++ L   + EE L+    E V      ++  G    EL R +R+   +   P++ +S 
Sbjct: 50  EGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFELVRQLRSMEKYRNTPVVFLSA 109

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140
                  +   + G DD + KP   RE++AR+ A++RR+++S    E  P ++ + G + 
Sbjct: 110 KGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRIQLSAQEREERPKKIVAKGLEI 169

Query: 141 EVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
           +V+        +   L   E  +L +L  N GK  ++  +   ++G +D   +   V+ H
Sbjct: 170 DVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDVLLDKLWG-YDYYGDTRTVDVH 228

Query: 194 ISKLRKKLRNKLGFDPVDSK 213
           I +LR K+      DP + K
Sbjct: 229 IRRLRTKIEE----DPSNPK 244


>gi|153853493|ref|ZP_01994873.1| hypothetical protein DORLON_00862 [Dorea longicatena DSM 13814]
 gi|149753648|gb|EDM63579.1| hypothetical protein DORLON_00862 [Dorea longicatena DSM 13814]
          Length = 220

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 3/158 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR     P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRILVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +   L + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELLLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD    ++ + +HI  +R K  +   + P+ +   +GY
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216


>gi|329905059|ref|ZP_08273989.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327547769|gb|EGF32543.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 229

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 7/167 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++L   R  R    +P+I ++     +  +   D+G DD V KP   RE+ AR+ A+ 
Sbjct: 64  GLRLLSRIRADRQLQAIPVIMLTAKTMEEDKIAGLDNGADDYVTKPFSPRELTARIKALL 123

Query: 117 RRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR    + ++    GP+ +        +  +   +   E ++L++ +A+  +  ++TQ+ 
Sbjct: 124 RRKSPEHAQSMMRAGPVTLDPISCSVSLSDQKIEIGHAEFKLLKFFLAHPDRVFSRTQLL 183

Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G  D AV EE  V+ H+ +LRK L+       + + R +GY +
Sbjct: 184 DKVWG--DHAVIEERTVDVHVLRLRKALKEAEHL--IRTVRSVGYML 226


>gi|315646998|ref|ZP_07900112.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277650|gb|EFU40975.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 6/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I +S        +    +G DD V KP H  E++ARV A  RR    + R 
Sbjct: 69  IRERSAIPIIMLSAKVESLDKITGLSTGADDYVTKPFHPVELMARVKAQLRRQNFLSLRE 128

Query: 127 E------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E       G + +       +V+G    L   E  ILE L ANRG+  + ++I   ++  
Sbjct: 129 EEPSEIHIGDLSIHKKQHLVKVRGAAVSLTPIEFSILELLAANRGQIFSVSKIHECVWKE 188

Query: 181 FDEAVEENVVESHISKLRKKL 201
                 +N V  HI  +R+K+
Sbjct: 189 QTPFFSDNTVMVHIRNIREKI 209


>gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 231

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 32/212 (15%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIR 68
           L K+GY  L   DG           +E +Q++    V  AI   ++ K +   E+ R IR
Sbjct: 23  LKKEGYDVLKAADG-----------QEAVQAAQTHSVDLAILDIMMPKLDG-YEVIRQIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA- 126
               +P+I +S   S    +     G DD + KP +  E++ARV A  RR +++S     
Sbjct: 71  EQHHMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNAHLRRYMQMSQPTTS 130

Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ-IFSAIYGL 180
                E G + ++ D R   + GE   L  +E  IL +L+A+  K+V  T+ IF  ++G 
Sbjct: 131 GKPALEAGGVIIYPDQRIVTLYGETIELTPKEFDIL-HLLASYPKKVFSTENIFQHVWG- 188

Query: 181 FDEAVEE--NVVESHISKLRKKL-----RNKL 205
             EA  E  N V  HI  LRKKL     +NKL
Sbjct: 189 --EAYFETSNTVMVHIRTLRKKLHEDTNKNKL 218


>gi|167617621|ref|ZP_02386252.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257140513|ref|ZP_05588775.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 225

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 30/182 (16%)

Query: 45  DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           DV  ++  L G  G  +L   R I   +  P++ +S    +   +    +G DD + KP 
Sbjct: 47  DVITLDRMLPGVDGLTILTTMRSIGVRT--PVLMLSALGDVDERVRGLRAGGDDYLTKPF 104

Query: 104 HHREILARVAAIYRRLKVSNNRAET----GPI-------RVFSDGRDPEVQGEVFPLPRR 152
              E+ AR+  + RR + S    ET    GP+       +V+ DG       E+  LP  
Sbjct: 105 DTEEMTARLEVLLRRSQASPAPFETTLAVGPLTLDLISRKVYRDG------AEIALLPT- 157

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           E R+LE++M + G+ + +  +F A++G  FD     N+++ H+ +LRKK+      DP D
Sbjct: 158 EYRVLEFMMRHAGQTITRMMLFEAVWGYHFDPGT--NLIDVHMGRLRKKI------DPPD 209

Query: 212 SK 213
           + 
Sbjct: 210 AT 211


>gi|78484886|ref|YP_390811.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78363172|gb|ABB41137.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 230

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + L + IR + Q    P+I ++        +  F+SG DD V KP   R ++ARV A+ R
Sbjct: 63  ISLAQRIRQNDQTATTPIIMLTARGEENDQVQGFESGADDYVVKPFSPRALVARVKALLR 122

Query: 118 RL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R    K + +  + GP+++        V  E   L   E +++++ M +  +   + Q+ 
Sbjct: 123 RQSPEKSTLDLIKIGPLKLDLSSYRFTVNDEEVKLGPTEFKLMQFFMTHSNRVYTRVQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++G  +  VEE  V+ HI +LRK L      D + + R  GY
Sbjct: 183 DQVWG-ENVVVEERTVDVHIRRLRKLLDPVGAADYIQTVRGAGY 225


>gi|99078210|ref|YP_611468.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035348|gb|ABF62206.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 244

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 15/229 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD A V++   AL  + G        +E    L      D++ I+  L  +GE  
Sbjct: 13  VIAIVDDDAQVRETLSALMHESGFESVCCPDIETFHALGDPPPVDLALIDLRL--RGESG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L   +R   ++P++ ++        +   ++G DD + KP + RE++AR+ A+ RR  
Sbjct: 71  LTLAIHLRERHEIPIVMLTGVGDEIDKIIGLETGADDYLIKPFNPRELVARIRAVLRRYG 130

Query: 121 VSNNRAETGPIRVFSDG---------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            ++ R  T   R  + G         R  +  GE  PL   E R+LE+L  N  + V + 
Sbjct: 131 HASARTVTSGKRQITFGEKRIDLDARRLLDSAGEEVPLTNAEYRLLEFLARNPERVVPRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218
           ++  A+ G   +   +  V+  I +LR+K+   +   PV   ++R  GY
Sbjct: 191 ELLEAL-GADTQRYVDRTVDVLILRLRRKI-EPVPAKPVHLQTRRARGY 237


>gi|327389463|gb|EGE87808.1| response regulator [Streptococcus pneumoniae GA04375]
          Length = 214

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 11/153 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 41  LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 100

Query: 119 -LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            + V    A++ P       + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 101 PMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITR 160

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 161 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 192


>gi|297623818|ref|YP_003705252.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297164998|gb|ADI14709.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 225

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S  P+I ++   S+   +   DSG DD + KP    E+LARV A  RR+ 
Sbjct: 64  LEVARRVRKTSNTPIIILTAKDSVDDKVLGLDSGADDYLVKPFSIEELLARVRAHLRRV- 122

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              N A TG +RV       DGR+    G    L  +E  +LE    + GK   + +I  
Sbjct: 123 ---NPAVTGEVRVADLVMNLDGREVFRDGRRIELSAKEFELLELFARSPGKVFNRFEIEE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NVV+ ++  LR+KL +      + + R +GY +
Sbjct: 180 KVWPEYTGG--SNVVDVYVGYLRRKLEHDGERRLIHTVRGVGYVL 222


>gi|255525895|ref|ZP_05392822.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255510389|gb|EET86702.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 231

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 7/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           IR  S VP++ ++        +    +G DD + KP +  E +ARV ++ RR        
Sbjct: 68  IRKKSSVPILMLTSKNDNGCKVRGLRAGADDYLTKPFNIDEFIARVISLIRRYTRFNPNG 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V  ++ +   + +  D R   +  E   LP +E  IL Y   N+GK + K QI+  ++G 
Sbjct: 128 VQASKLDYDGLIIDLDSRTIMIHNETLELPPKEFDILLYCAKNQGKILTKKQIYEEVWG- 186

Query: 181 FDEAVEENVVESHISKLRKKL 201
              A +++ + + IS++RKK+
Sbjct: 187 EPYAYDDSNIMALISRIRKKI 207


>gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
 gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
          Length = 229

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 10/167 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L RI    SQ P+I ++    ++  +   D G +D V KP    E+LAR   I   L+ S
Sbjct: 65  LKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLAR---IRNALRFS 121

Query: 123 NNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + T      G + +    R+    G+   L  RE  +L YLM +  + + + QI   
Sbjct: 122 QKASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILET 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G FD   + NVV+ +I  +R+KL        + + R +GY +  N
Sbjct: 182 VWG-FDYYGDTNVVDVYIRYVRQKLEIANVTPIIQTVRGVGYVLKEN 227


>gi|91787344|ref|YP_548296.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91696569|gb|ABE43398.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 226

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 88/164 (53%), Gaps = 5/164 (3%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA  + +P++ ++   SL   ++  + G DD + KP    E+ AR+ A+ RR +
Sbjct: 61  EILRRLRAQDKRLPVLILTARDSLADRVNALNEGADDFLAKPFALAELEARLTALVRRAR 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S + R   GP+   +  R   +  E  PL  RE  +L+ L+   G+ +++ Q+   ++ 
Sbjct: 121 GSEHPRFACGPLLFDTVSRQFTLGSENLPLSPREHALLKALIQRSGEPLSRQQVMDRVFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +E V+ +V++  + +LRK+L +  G   + + R LGY ++ +
Sbjct: 181 -DEEDVQPSVIDVLVHRLRKRLDHS-GVR-IQTYRGLGYVLELD 221


>gi|329903638|ref|ZP_08273573.1| Response regulator receiver:Transcriptional regulatory protein
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548260|gb|EGF32956.1| Response regulator receiver:Transcriptional regulatory protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 221

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 57  GEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+  LE+   IRA  + VPL+ I+    L   +   D G DD + KP    E+LAR+ A+
Sbjct: 56  GKDGLEVLTSIRAIGNPVPLLIITARDGLDDRVRGLDGGADDYLLKPFEIAELLARMRAV 115

Query: 116 YRRLKVSNNRA-ETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR   S       G + +    R   V  GE   L  RE  +L  L+   G  +++ ++
Sbjct: 116 LRRKGGSAAPVLGNGIVSLDPATRGATVNDGESVQLSNREFGLLHALLTRPGAILSRREL 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              +YG + E VE N VE  I  LR+    KLG D + + R +G+ +  N
Sbjct: 176 EDRLYG-WGEEVESNAVEFLIHALRR----KLGSDVIKNVRGVGWMVSKN 220


>gi|325916695|ref|ZP_08178954.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325537095|gb|EGD08832.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 233

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 2/131 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
             P++ ++    ++  +   D G DD + KP   RE  AR   + RR +  ++   + G 
Sbjct: 72  STPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQIGG 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
               +      + G    LP RE R+LE L+   G  V K +I + ++G FD+    N +
Sbjct: 132 FVFDNAAHTVTLDGTPIELPNREYRLLEILIGRLGHVVGKDEIGNGLFG-FDDDAGPNAI 190

Query: 191 ESHISKLRKKL 201
           E ++ +LR+KL
Sbjct: 191 ELYVGRLRRKL 201


>gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 227

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 12/148 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCRQLRLSSHVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVLRRRTP 121

Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   +    R+ S GR           V G    +P +E  +LE LM N G+ + + Q+
Sbjct: 122 DDADLDD---RILSGGRVTLDIDRHTVAVDGNEINMPLKEFELLEVLMRNAGRVLTRGQL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G  D   +   ++ HI ++R ++
Sbjct: 179 IDRVWG-TDYFGDTKTLDVHIKRIRSRI 205


>gi|307152831|ref|YP_003888215.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
 gi|306983059|gb|ADN14940.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 633

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 2/150 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
           Q P++ ++   S    +   D+G DD + KP++   ++AR+ A+ RR   S ++  E G 
Sbjct: 67  QEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKNASLSSVIEWGN 126

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +++     +   + E   L  +E  +LE  + N  +   +  I   ++ + +   EE  V
Sbjct: 127 LQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWDIGESPGEE-TV 185

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +HI  LR+KL+N    DP+++   LGY +
Sbjct: 186 STHIKCLRQKLKNAGVSDPIETVYGLGYRL 215


>gi|291543807|emb|CBL16916.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 263

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 14/210 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + V  DDR +V+     L   +G++ L  +N LE    L++ A   VS I   ++     
Sbjct: 27  VLVADDDRDIVR-AIATLLEQEGLTVLRAYNGLEA---LEAVAEHPVSLILIDVMMPKLD 82

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
            L     IR    +P++ +S        +     G DD + KP H +E+ ARV +  RR 
Sbjct: 83  GLSAMMKIREQKNIPILILSAKSEESDKILGLSMGADDYIAKPYHPQELAARVKSSLRRY 142

Query: 119 --LKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             L  +++      IRV     DP+     V GE   L  +E +I+E  + N G+  +  
Sbjct: 143 LHLGAADSARMQKLIRVGGLEYDPDTRQLTVDGEPVRLTSKELKIMELFLRNPGRIFSAE 202

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +I+S ++     AV EN V  HI  +R+K+
Sbjct: 203 EIYSRVWNEDAYAV-ENTVMVHIRHIREKI 231


>gi|226939262|ref|YP_002794333.1| OmpR [Laribacter hongkongensis HLHK9]
 gi|226714186|gb|ACO73324.1| OmpR [Laribacter hongkongensis HLHK9]
          Length = 219

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 31/231 (13%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+ DG  A     G+   GFN    ++   + A    +  +A ++  G     
Sbjct: 4   LLVEDDPLLGDGLEA-----GLRQSGFNVDWMKDGAAARAAMAAAPYDAVVLDLG----- 53

Query: 63  LPRII---------RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           LP++          R     P++ ++   S++  +   D+G DD + KP    E++AR+ 
Sbjct: 54  LPKVSGLDVLGEWRRQGVDTPVLILTARDSVEDRIRGLDTGADDYLVKPFALGEVVARLR 113

Query: 114 AIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR   S+ RA    E G + +  + R     G    L  +E ++LE  + N+ + + 
Sbjct: 114 ALIRR---SHGRANPVFEHGTLVLDPNARTVLQDGRAVELTAKEFQLLELFLENKSRVLP 170

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +   +YG   E ++ N +E H+  LRKKL ++L    + + R +GY +
Sbjct: 171 RALLEEKLYGWAQE-LDSNALEVHVHHLRKKLGSQL----IRTVRGVGYQL 216


>gi|226357399|ref|YP_002787139.1| response regulator OmpR [Deinococcus deserti VCD115]
 gi|226319389|gb|ACO47385.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 219

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 3/158 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L + +R +S  P++ +S    +Q  +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  LDLVQALRQYSSTPVLVLSARSGVQERVAGLNAGADDYLTKPFAMPELDARITALLRR-T 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G   + +      V  +   L   E RILE +M    +  ++  I S +YG 
Sbjct: 120 AAGTGVNLGNTSLSTSSLLLTVDEKNINLTEHEARILELMMRTPERVFSRADIESHLYGW 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E    N VE  IS+LRKKL        + + R +GY
Sbjct: 180 --ETPNSNSVEVRISQLRKKLEQAASDLRIRTIRNVGY 215


>gi|261855398|ref|YP_003262681.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261835867|gb|ACX95634.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 226

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 5/131 (3%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--LP 150
           +G DD + KP    E+LAR+ A+ RR++  ++        +  D    +V     P  L 
Sbjct: 93  AGGDDYLTKPYAFSELLARIEALTRRMQTRDSSDTLAVADLVLDRVRHKVMRRDQPILLQ 152

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209
            RE R+L+YLM + G+ V +T +   ++G  FD   + NV++ HIS+LR K+        
Sbjct: 153 PREFRLLDYLMRHAGQVVTRTMLLEQVWGYHFDP--QTNVIDVHISRLRSKIDRDFDTPL 210

Query: 210 VDSKRFLGYSI 220
           + + R  GY +
Sbjct: 211 LHTVRGAGYVL 221


>gi|104783258|ref|YP_609756.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
           entomophila L48]
 gi|95112245|emb|CAK16972.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
           entomophila L48]
          Length = 224

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 19/165 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +RA S   ++ ++ +  L   +   D G DD + KP    E+LAR+ ++ RR        
Sbjct: 66  LRAESSTRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQHLQPS 125

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            LKV++   + G  R +  G+  ++  + F L       L  LM   G+ +++TQI S +
Sbjct: 126 TLKVADLELDPGRHRAWRGGQRIDLTAKEFAL-------LHLLMRQSGEVLSRTQIISLV 178

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + FD   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 179 WDMNFD--CDTNVVEVSIRRLRAKIDDPFEDKLIHTLRGVGYVLE 221


>gi|331090954|ref|ZP_08339796.1| hypothetical protein HMPREF9477_00439 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405176|gb|EGG84712.1| hypothetical protein HMPREF9477_00439 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 223

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ IS        +   + G DD V+KP     I A++ A+ RR    + S 
Sbjct: 67  IRKVSKVPIVFISSASDNMNIVMAINMGADDFVDKPFDLNVITAKIQALLRRTYSFQGSV 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + +  +      + +   L + + +IL+ L+ N GK V++ +I   ++   +E
Sbjct: 127 NVIEHKGVVLNLNDASVSYEEKHLELTKNDYKILQLLLENVGKIVSREEIMVRLWE-NEE 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      D + +K+ +GY I
Sbjct: 186 FIDDNTLTVNVTRLRKKLETIGVKDFIATKKRIGYII 222


>gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family
           [Megamonas hypermegale ART12/1]
          Length = 230

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 14/149 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R+IR  S VP+I I+        +   + G DD + KP    EI+AR+ AI RR+ 
Sbjct: 60  FEVCRVIRKTSNVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAILRRI- 118

Query: 121 VSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               + +T  ++VFS              +  +V  L ++E  IL  L   + +  ++  
Sbjct: 119 ----QPKTENLQVFSYDNLQINLVDYTVSINNKVLSLTKKEIEILWTLATKKDRVFSRDM 174

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + + ++G +D   +   V+SHI +LR KL
Sbjct: 175 LLNKLWG-YDYIGDSRTVDSHIKRLRAKL 202


>gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
 gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
          Length = 235

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 121 VSN-NRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +++ +  ET          G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LASVDSQETDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213


>gi|288573461|ref|ZP_06391818.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569202|gb|EFC90759.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 240

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IR+  +   +P+I ++     +  +   + G DD + KP    E++ARV ++ RR
Sbjct: 66  EVCRRIRSSPESRALPIIMMTARRDERDLVQGLELGADDYIRKPFSLVELMARVKSLIRR 125

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++   +     G + +  +G+  + +GE   L   E R+L  L    G+ V + ++ S 
Sbjct: 126 TQLVQTKPTVSVGDLEIDLEGQIAKFKGEEINLSLTEYRLLRTLAERPGQVVPRERLLSL 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220
           I+G++    +   V+ HIS+LRKKL    G     + + R  GY I
Sbjct: 186 IWGVY--GGDTRTVDVHISRLRKKLAQAGGDSAPTITALRGRGYRI 229


>gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 4/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPI 131
           +P+I ++   + +  +   D+G DD + KP +  E+LAR+ A++ RR     +    G +
Sbjct: 79  LPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLRRRQPQEKSIIRVGDL 138

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190
            +    R+         L  RE  +LE+L  N G  V+K  IF  ++G  FD  ++ + V
Sbjct: 139 TLNLASREAMRGERKLDLTTREFDLLEFLARNEGHVVSKEAIFERVWGYSFD--IDSDAV 196

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +IS LR KL      D + + R +GY +
Sbjct: 197 KVYISYLRSKLTAGGEPDMIHTIRGIGYML 226


>gi|114765250|ref|ZP_01444382.1| DNA-binding response regulator CtrA [Pelagibaca bermudensis
           HTCC2601]
 gi|114542385|gb|EAU45413.1| DNA-binding response regulator CtrA [Roseovarius sp. HTCC2601]
          Length = 258

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 102 PIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
           P+   E+ +RV AI RR    +      G I  + DGRDP+V G+   L +RE  I + +
Sbjct: 104 PVTGLELRSRVNAITRRFHGHAAGTLRIGDITAYFDGRDPDVGGQPMKLSQRELAIFQQI 163

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGY 218
                + V+K+ I+ A+YG+  +   + V++ +I ++RKK+   + LG   + + R  GY
Sbjct: 164 ALAAPRVVSKSVIYDAVYGMAQDQPFDKVIDVYICRIRKKIEEMSPLGDPHIRTIRGRGY 223

Query: 219 SI 220
            +
Sbjct: 224 KL 225


>gi|120403327|ref|YP_953156.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956145|gb|ABM13150.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 244

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 8/181 (4%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           R D++ I+  L G   +VL LP + R      LI ++    +++ +D    G DD + KP
Sbjct: 62  RIDLALIDIGLAGVDGRVL-LPHLRRQDPTTGLILLTARSDIESKVDALRGGADDYITKP 120

Query: 103 IHHREILARVAAIYRRLKVSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
            H  E++ARV A+ RR K     +E G   + V  D            L   E R+L +L
Sbjct: 121 FHPTEVIARVDAVLRRTK-GEEPSELGYADLTVDIDRLTVRRAQRKLALTPTELRLLVFL 179

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYS 219
           + N  + V+++QI   ++  ++   E  +VE  IS LR+K+    G +P + + R  GY+
Sbjct: 180 LRNAERVVSRSQILDQVWQ-YEFRGEGLIVEKVISNLRRKVDT--GSEPLIHTVRGFGYT 236

Query: 220 I 220
           +
Sbjct: 237 L 237


>gi|56962036|ref|YP_173758.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908270|dbj|BAD62797.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 224

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 1/164 (0%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+   +L + +++    P++ ++    LQ  L  F  G DD + KP +   +LAR+  + 
Sbjct: 57  GQSGFDLCKSLKSKGIGPILILTSRDKLQDELHGFHLGADDYLTKPCNRDRLLARIQNLL 116

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR        + G   +  +        E   L   E +IL  L+ +R + V+K  +   
Sbjct: 117 RRFARQPGLVDGGDFSLDPNTYTLYKGSESLVLSANEGKILLALVQSRPEIVSKKALSEL 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D+ ++EN ++ ++++LRK LR     D +++ R  GY +
Sbjct: 177 LWGT-DQFIDENAIQVNLTRLRKTLRPLNLEDQIETVRGQGYRL 219


>gi|116492482|ref|YP_804217.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102632|gb|ABJ67775.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 228

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 21/221 (9%)

Query: 18  LFGDDGVSLEGFNSLE-----FEEWLQSSAR--------EDVSAIEAFLIGKGEKVLELP 64
           L  +D  SL  F  LE     +E  +QS+ R        ED  AI   L+      +E+ 
Sbjct: 5   LIIEDEKSLARFVQLELQHEGYEVEVQSNGRTGLEAALSEDFDAILLDLMLPEINGIEVC 64

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
           R IR     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+ +   
Sbjct: 65  RRIRREKITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVDLETQ 124

Query: 124 ------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E   I +  + R      EV  L +RE  +L  LM N     ++  + + +
Sbjct: 125 DSTFHQTTVEFQDIVIEKENRVVRRNNEVINLTKREYELLLLLMENINVVQSRETLLNKV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G+ D+ VE NVV+ +I  LR K+  K     + + R  GY
Sbjct: 185 WGV-DDGVETNVVDVYIRYLRNKIDVKGRPSYIQTVRGTGY 224


>gi|71275673|ref|ZP_00651958.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71897783|ref|ZP_00680009.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|170729506|ref|YP_001774939.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|71163564|gb|EAO13281.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71732338|gb|EAO34392.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|167964299|gb|ACA11309.1| response regulator receiver protein [Xylella fastidiosa M12]
          Length = 231

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 6/132 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   +++  +   + G DD ++KP   RE  AR   + RR +   N +E   I 
Sbjct: 73  TPVLILTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLRRNR--GNASEVVRIG 130

Query: 133 VF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            F   +      + GE   LP RE R+LE L+A  G+ V K +I ++++  FD+    N 
Sbjct: 131 GFEFDNASHRIRLHGEPIKLPNREYRLLEILIARLGQIVGKDEIGNSLFN-FDDNAGPNA 189

Query: 190 VESHISKLRKKL 201
           +E ++++LR+KL
Sbjct: 190 IELYVARLRRKL 201


>gi|306826555|ref|ZP_07459864.1| response regulator [Streptococcus pyogenes ATCC 10782]
 gi|304431282|gb|EFM34282.1| response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 217

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 3/141 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I ++      T L  F+  + D V KP     ++ R+  +  R+ 
Sbjct: 61  LEVLKTIRKTSDVPIIMLTALDDEYTQLVSFNHLISDYVTKPFSPLILIKRIENVL-RVS 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + + + G + V     +   QG +  L ++E  I++YL     K V + Q+   I+G 
Sbjct: 120 TPDEKRQIGDLLVDETEHNVYWQGTLVKLTKKEYDIIDYLAKRHQKIVTRDQLMDDIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKL 201
               ++  V+++HI  LRKK+
Sbjct: 180 --SELDTRVLDNHIKNLRKKM 198


>gi|326319003|ref|YP_004236675.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375839|gb|ADX48108.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 248

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 23/182 (12%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L+L R IR   Q P+I ++        L     G DD V KP    E++ARV A+ 
Sbjct: 67  GMDGLDLLRAIREDGQTPVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVL 126

Query: 117 RRLKV-------SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRR--ERRILEYL 160
           RR++        +  R   G I +       F+ G D    G   PLP    E R+L  L
Sbjct: 127 RRVQAQPSAPARAAQRIRVGRIEIDQEAHAAFAHGDD----GRAVPLPLTLTEYRLLACL 182

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A   +  +++ +    + L +    + V++SH+SKLR+KL+     + +++ R +GY +
Sbjct: 183 AAQPRRCFSRSHLIE--HCLPESDALDRVIDSHLSKLRRKLQQAGQGELIETVRGIGYRL 240

Query: 221 DW 222
            W
Sbjct: 241 -W 241


>gi|187779227|ref|ZP_02995700.1| hypothetical protein CLOSPO_02822 [Clostridium sporogenes ATCC
           15579]
 gi|187772852|gb|EDU36654.1| hypothetical protein CLOSPO_02822 [Clostridium sporogenes ATCC
           15579]
          Length = 223

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 22/168 (13%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP+I ++   S    L   + G DD + KP +   +LAR+  I +R    
Sbjct: 63  ICREIRKTSDVPIIIVTSRDSDVDELMSINLGADDFITKPYNTEILLARITNILKRTYGN 122

Query: 119 LKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           LK +N       N   +    ++ D        +   L + E +IL YL+ N+G  V + 
Sbjct: 123 LKTNNILNYRDFNLNLSNATVIYKD--------KSLELTKNEVKILSYLINNKGNIVKRD 174

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            +   ++   D  V+++ +  +I++LRKKL+ ++G  +P++++R LGY
Sbjct: 175 LLMEYLWK-SDYFVDDSTLTVNINRLRKKLQ-EIGIENPIETRRGLGY 220


>gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
 gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
          Length = 223

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 98/203 (48%), Gaps = 15/203 (7%)

Query: 25  SLEGFNSLEFEEWLQSSAREDVSAIEAF-LIGKGEKVLELP-----RIIRAHSQVPLIGI 78
             EGF ++E  + LQ+    ++   E+F LI     + EL      R IR  S  P++ +
Sbjct: 22  QFEGFETVEAVDGLQAV---EICRKESFDLIIMDVMMPELDGFSAVREIRKTSSTPVLML 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRAETGPIRVFS 135
           S        +  F+ G+DD V KP   +E++ RV+AI +R    +   +    G + V  
Sbjct: 79  SARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILKRSGGGEAQRDVVTYGGLTVDF 138

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
            GR   + G+   +  +E  +  YL+ N+G  + + ++ + ++G +D   ++  +++HI 
Sbjct: 139 TGRLVYIDGKRVDMTPKEYDLFFYLVKNKGIALTREKLINEVWG-YDFYGDDRTLDTHIK 197

Query: 196 KLRKKLRNKLGFDPVDSKRFLGY 218
            LRK L    G   + + R +GY
Sbjct: 198 LLRKSLGEYSG--TITTLRGVGY 218


>gi|119718048|ref|YP_925013.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538709|gb|ABL83326.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 228

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 19/151 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L  +IRA S VP+I I+      T +   D G DD V KP    ++ AR+ A+ RR  
Sbjct: 61  LTLIGMIRAASTVPIIVITAQDDDPTMVKALDGGADDYVVKPFGTGQVEARIRAVLRR-- 118

Query: 121 VSNNRAETG-PIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +RA T  PIRV         R   + G    L RRE  +L  L   +G+ + K +I 
Sbjct: 119 --GDRALTSEPIRVGQLVIDEGARTAALAGRRLELARREFDLLLALAQRQGQVMTKREIL 176

Query: 175 SAI----YGLFDEAVEENVVESHISKLRKKL 201
           + +    YG  D +     ++ H+S LR+KL
Sbjct: 177 AEVWQQAYGGGDRS-----IDVHLSWLRRKL 202


>gi|77465512|ref|YP_355015.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77389930|gb|ABA81114.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 220

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 14/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+ DD  + +D  +AL G  G  +E     E   +L  +   D+  ++  L  K + + 
Sbjct: 4   LVVEDDARIAQDLSVAL-GSAGFRVETAADGETAWFLGGTEGYDLIVLDLGLP-KLDGLA 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R      ++P++ ++   +    ++  D+G DD + KP    E++AR  A+ RR   
Sbjct: 62  VLKRWRAEGVEIPVLVLTARGTWTERVEGIDAGADDYLPKPFRIEELVARARALVRR--- 118

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  RA      G + +  +     + G    L   E R+L YLM +R + V  T++   +
Sbjct: 119 STGRAAPLQSVGRLALDMNRMTATLDGLPLGLAPLEFRLLAYLMLHRDRVVPPTELLEHL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           YG  ++A E N +E+ +++LR+    K+G   + ++R  GY ++
Sbjct: 179 YG-DNDAREANALEAVVARLRR----KVGRGVIGTRRGFGYQLE 217


>gi|54022631|ref|YP_116873.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014139|dbj|BAD55509.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 238

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 11/189 (5%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPLIGI 78
           G+ L GF+ L   +   +    +    +A ++     VL+   ++ A     + VP+  +
Sbjct: 28  GLRLSGFHVLVARDGAAALRSVNADCPDAVVLDMNMPVLDGAGVVTALRALGNDVPICVL 87

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIR 132
           S   S+   +   +SG DD + KP    E++AR+ A+ RR         +      GP+ 
Sbjct: 88  SARASVDDRISGLESGADDYLVKPFVLAELVARIKALLRRRTDAPAAAATPGAITVGPLE 147

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   G    + G    L +RE  +L  L  N G  +++ ++   ++G +D A + NVV+ 
Sbjct: 148 VDEAGYRALLHGREIELTKREFELLSTLARNAGVVLSRERLLELVWG-YDFAADTNVVDV 206

Query: 193 HISKLRKKL 201
            +  LR+KL
Sbjct: 207 FVGYLRRKL 215


>gi|22125369|ref|NP_668792.1| response regulator [Yersinia pestis KIM 10]
 gi|45442409|ref|NP_993948.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597048|ref|YP_071239.1| two-component response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108808192|ref|YP_652108.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|108811537|ref|YP_647304.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|145599392|ref|YP_001163468.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|153946864|ref|YP_001400283.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|162418219|ref|YP_001607153.1| DNA-binding response regulator [Yersinia pestis Angola]
 gi|166011234|ref|ZP_02232132.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212492|ref|ZP_02238527.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399427|ref|ZP_02304951.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167424627|ref|ZP_02316380.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186896131|ref|YP_001873243.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|229895670|ref|ZP_04510841.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|229901804|ref|ZP_04516926.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|270489994|ref|ZP_06207068.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504760|ref|YP_003568822.1| response regulator [Yersinia pestis Z176003]
 gi|21958252|gb|AAM85043.1|AE013750_3 putative response regulator [Yersinia pestis KIM 10]
 gi|45437274|gb|AAS62825.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590330|emb|CAH21967.1| putative two-component response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775185|gb|ABG17704.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|108780105|gb|ABG14163.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|145211088|gb|ABP40495.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|152958359|gb|ABS45820.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|162351034|gb|ABX84982.1| DNA-binding response regulator [Yersinia pestis Angola]
 gi|165989912|gb|EDR42213.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206423|gb|EDR50903.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167051931|gb|EDR63339.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056509|gb|EDR66278.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186699157|gb|ACC89786.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681733|gb|EEO77827.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|229701476|gb|EEO89504.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|262362822|gb|ACY59543.1| response regulator [Yersinia pestis D106004]
 gi|262366746|gb|ACY63303.1| response regulator [Yersinia pestis D182038]
 gi|270338498|gb|EFA49275.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355219|gb|ADE65560.1| response regulator [Yersinia pestis Z176003]
 gi|320014434|gb|ADV98005.1| putative two-component response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 235

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%)

Query: 1   MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLI 54
           M +LI +D A +++G + +        EG+  +  E  +Q+ A     + D   ++  + 
Sbjct: 1   MKILIAEDNAHIRNGLMEVLAH-----EGYRPIAAENGVQALALYRQQQPDFIILDIMMP 55

Query: 55  G-KGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
              G KV    R IR H  Q P+I +S        +   + G DD ++KP    E+ AR+
Sbjct: 56  ELDGYKVC---REIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARI 112

Query: 113 AAIYRRL--KVSNNRAETG----PIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRG 165
             I RR   KV  +  + G     + VF +     ++GE    L  RE  IL YL  ++G
Sbjct: 113 KTIVRRCLRKVPESAEDAGFPFGDLMVFPN-ELCAIRGETRLELSLREVNILRYLYQHKG 171

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           + V +  +F A++G +D   +   ++ HISKLRK +      DPV
Sbjct: 172 RVVTRDMLFDAVWG-YDHLPQSRTLDQHISKLRKTIE----LDPV 211


>gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 236

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 16/201 (7%)

Query: 34  FEEWLQSSAREDVSAIEAFLIGKGEKVLELP---------RIIRAHSQVPLIGISDYPSL 84
           FE    ++ RE + A E F        + LP         R+  A    P++ ++     
Sbjct: 32  FEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFTVTRRLRSAGRHFPVVFLTARDGT 91

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSDGRD 139
           +  +     G DD V KP    E++AR+ A+ RR   S +  +   +RV       D  +
Sbjct: 92  EDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRR-TASLDDDDAAVLRVDDLELDDDAHE 150

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
               GEV  L   E ++L YLM N  + ++K QI   ++  +D   + ++VES+IS LR+
Sbjct: 151 VRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHVWE-YDFNGDASIVESYISYLRR 209

Query: 200 KLRNKLGFDPVDSKRFLGYSI 220
           K+        + +KR +GY +
Sbjct: 210 KIDVGGHEKMIHTKRGVGYML 230


>gi|74314832|ref|YP_313251.1| DNA-binding response regulator CreB [Shigella sonnei Ss046]
 gi|193065660|ref|ZP_03046726.1| transcriptional regulatory protein CreB [Escherichia coli E22]
 gi|218556934|ref|YP_002389848.1| DNA-binding response regulator CreB [Escherichia coli IAI1]
 gi|256020158|ref|ZP_05434023.1| DNA-binding response regulator CreB [Shigella sp. D9]
 gi|260847288|ref|YP_003225066.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O103:H2 str. 12009]
 gi|300905390|ref|ZP_07123159.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300923534|ref|ZP_07139569.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|301303503|ref|ZP_07209626.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|332281320|ref|ZP_08393733.1| catabolic regulation response regulator [Shigella sp. D9]
 gi|73858309|gb|AAZ91016.1| catabolic regulation response regulator [Shigella sonnei Ss046]
 gi|192926733|gb|EDV81361.1| transcriptional regulatory protein CreB [Escherichia coli E22]
 gi|218363703|emb|CAR01363.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli IAI1]
 gi|257762435|dbj|BAI33932.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O103:H2 str. 12009]
 gi|300402759|gb|EFJ86297.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300420208|gb|EFK03519.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300841230|gb|EFK68990.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|315255739|gb|EFU35707.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|320200483|gb|EFW75069.1| Two-component response regulator CreB [Escherichia coli EC4100B]
 gi|323166208|gb|EFZ51986.1| transcriptional regulatory protein creB [Shigella sonnei 53G]
 gi|323181940|gb|EFZ67352.1| transcriptional regulatory protein creB [Escherichia coli 1357]
 gi|324019813|gb|EGB89032.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|332103672|gb|EGJ07018.1| catabolic regulation response regulator [Shigella sp. D9]
          Length = 229

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|296447623|ref|ZP_06889543.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296254888|gb|EFH01995.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 221

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 14/150 (9%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL+  R  +A   VP++ I+    +++T+D  D G DD + KP     +LAR+ A+ 
Sbjct: 59  GFDVLKAAR--KAGGSVPILIITARDGVESTVDGLDLGADDYIVKPFSLCALLARIRAVL 116

Query: 117 RRLKVSNNRAETGPIRVFSD-GRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAK 170
           RR+   N +A +  + V ++   DP  +  +F      L  RE  +L  LM   G  +++
Sbjct: 117 RRV---NGQAHS--LLVSNEIILDPSTRVAIFRGVKGVLTAREYSLLYTLMKRPGAILSR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           +QI   IYG + E V+ N V+  I  LRKK
Sbjct: 172 SQIEERIYG-WGEEVQSNAVDVLIHVLRKK 200


>gi|226939099|ref|YP_002794170.1| PhoB [Laribacter hongkongensis HLHK9]
 gi|226714023|gb|ACO73161.1| PhoB [Laribacter hongkongensis HLHK9]
          Length = 229

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 14/225 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++         G  +    S E  + L  +A  D+  ++  L   G+  +
Sbjct: 5   ILLVEDEPAIQELIAFNLAQSGHQVLRAASAEAAQTLVKNALPDLVLLDWML--PGQSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R +R+     +VP+I ++     Q  +   ++G DD + KP   RE+ AR+ A+ RR
Sbjct: 63  EFARRLRSDERTREVPIIMLTARSDEQDKIAGLETGADDYITKPFSPRELQARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  E   +R+          G+   L   E R+L + M +  +  +++Q+   
Sbjct: 123 RAPQMTDDAVEVQGLRLDPATHRVAAGGQPLDLGPTEFRLLHFFMTHPERVHSRSQLLDQ 182

Query: 177 IYG--LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           ++G  +F   VEE  V+ HI +LR  L    G D  V + R  GY
Sbjct: 183 VWGDHVF---VEERTVDVHIRRLRSALEPS-GHDALVQTVRGTGY 223


>gi|213023977|ref|ZP_03338424.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 187

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 6/163 (3%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +R   Q +P++ ++   ++   +   + G DD + KP    E+ AR+ A+ RR 
Sbjct: 23  LEVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 82

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  +     +F D     +QG+   L  RE+ +L  LM  R + V++ Q+F  ++ 
Sbjct: 83  AGLVHEVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 142

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           L DE   E+ +E +I +LRKKL+   G D  + + R LGY ++
Sbjct: 143 LNDEVSPES-IELYIHRLRKKLQ---GSDVRITTLRGLGYVLE 181


>gi|212710908|ref|ZP_03319036.1| hypothetical protein PROVALCAL_01976 [Providencia alcalifaciens DSM
           30120]
 gi|212686605|gb|EEB46133.1| hypothetical protein PROVALCAL_01976 [Providencia alcalifaciens DSM
           30120]
          Length = 237

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 3/153 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   + + R +R  S VP+I ++        L   + G DD V KP   RE++ARV
Sbjct: 65  LMLPGLDGISVCRELRQFSDVPVIMVTAKTEEIDRLLGLEIGADDYVCKPFSPREVVARV 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAK 170
             I RR + S+  A     ++  D    +V+   ++  L   E R+L++L  N G   ++
Sbjct: 125 KTILRRCQHSSTSANHHGTQLIIDENAFQVRYGDKLLELTPAEFRLLKFLSDNAGTVFSR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            Q+   +Y      V +  ++SH+  LR+KL +
Sbjct: 185 DQLLDILYD-DHRVVTDRTIDSHVKNLRRKLES 216


>gi|54024784|ref|YP_119026.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54016292|dbj|BAD57662.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 219

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R  S VP++ ++     ++ +     G DD + KP    E++AR+  + RR  
Sbjct: 58  LQVLRQLREVSSVPVLILTARSDERSVVRGLRGGADDYLVKPPRIAELMARLETVTRRAA 117

Query: 121 VSNN--RAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V+    R E  TG +RV    R  EV G   PL ++E  ++E L+   G  V++ Q+   
Sbjct: 118 VAAQPPRREVVTGDVRVDLVARVVEVAGSPVPLTQKEFELVEALVERPGAAVSRQQLMDR 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I+G    AV  + ++ H++ LR KL N+ G   + + R  GY
Sbjct: 178 IWGDAFVAVSRS-LDVHMTGLRAKL-NRPGL--ITTIRGYGY 215


>gi|71901162|ref|ZP_00683267.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71729084|gb|EAO31210.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 231

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 6/132 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   +++  +   + G DD ++KP   RE  AR   + RR +   N +E   I 
Sbjct: 73  TPVLILTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLRRNR--GNASEVVRIG 130

Query: 133 VF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            F   +      + GE   LP RE R+LE L+A  G+ V K +I ++++  FD+    N 
Sbjct: 131 GFEFDNAAHRIRLNGEPIKLPNREYRLLEILIARLGQIVGKDEIGNSLFN-FDDNAGPNA 189

Query: 190 VESHISKLRKKL 201
           +E ++++LR+KL
Sbjct: 190 IELYVARLRRKL 201


>gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 224

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 12/138 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           S+VP++ ++   S Q  +   DSG DD + KP    E+LAR+ ++ RR    +N  +T  
Sbjct: 71  SRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRR----SNAQQTAR 126

Query: 131 IR-----VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            R     +  D R  +V   G+   L  +E  +L+YL+ N+G  +++ QI    +    E
Sbjct: 127 TRLTLADLTLDTRTHQVTRGGQEIALTPKEFSVLDYLLRNQGTVLSREQILEHAWDFSYE 186

Query: 184 AVEENVVESHISKLRKKL 201
               N+V+ +I  LRKK+
Sbjct: 187 GY-SNMVDVYIKTLRKKI 203


>gi|229191306|ref|ZP_04318292.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228592111|gb|EEK49944.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
          Length = 225

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 2/158 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +E  V+ H+ +LR +   +     + + R LGY ++ N
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLELN 225


>gi|217976385|ref|YP_002360532.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217501761|gb|ACK49170.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 231

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   +    +G DD ++KP    E+LARV  + RR K +    ET   
Sbjct: 76  ETPVLILSALGQVDDRVKGLRAGGDDYLSKPYAFAELLARVEILARR-KQNGTGEETVYR 134

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            G + +         +G+   L  RE R+LEYLM + G+ V +T +   ++   FD   +
Sbjct: 135 VGGLELDRLAHKVAREGKEIQLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP--Q 192

Query: 187 ENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            NV++ HIS+LR K+    GF+P  + + R  GY I
Sbjct: 193 TNVIDVHISRLRSKIDK--GFEPPLLQTIRGAGYMI 226


>gi|154484219|ref|ZP_02026667.1| hypothetical protein EUBVEN_01930 [Eubacterium ventriosum ATCC
           27560]
 gi|149734696|gb|EDM50613.1| hypothetical protein EUBVEN_01930 [Eubacterium ventriosum ATCC
           27560]
          Length = 227

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 2/139 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNR 125
           IR HSQVP+I ++   S +  L+  ++G D+ + KP   + +L  +   I R      + 
Sbjct: 73  IREHSQVPVIMLTARESEEDQLNGLNNGADNYITKPFLMKVLLVHMGKLIQRNGNEDTDV 132

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E G +++    R   + GE      +E  +L Y+  N    + +  I  A++G FD   
Sbjct: 133 IEKGALKLEKQFRKAYINGEFVDTTPKEFDLLVYMCENEKVVLKRENILDAVWG-FDYDG 191

Query: 186 EENVVESHISKLRKKLRNK 204
           +   V++ + +LRKK+ +K
Sbjct: 192 DMRTVDTLVKQLRKKMTDK 210


>gi|29829952|ref|NP_824586.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607062|dbj|BAC71121.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 8/131 (6%)

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ------GEVFPL 149
           DD + KP +  E++AR+ A+ RR + ++      P+R + D    E        G    L
Sbjct: 114 DDYITKPFNIDEVVARITAVLRRTRPADALPRRPPLR-YGDLELDETTYSARRAGHTVEL 172

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
              E  +L +L+ N G+ V K Q+   ++       E  VVE++IS LR+KL   LG   
Sbjct: 173 TPTEYALLRFLVRNGGRIVTKEQLLRHVWQYEHTPAESTVVETYISYLRRKL-EPLGPPV 231

Query: 210 VDSKRFLGYSI 220
           + ++R +GY +
Sbjct: 232 IQTRRGVGYGL 242


>gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 246

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  S +  
Sbjct: 72  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVARSAHDG 131

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G IR+ ++ R    + E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 132 IPSSGVIQVGDIRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 191

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 192 YTPERHVDTRVVDVHISRLRAKLED 216


>gi|27468018|ref|NP_764655.1| putative response regulator ArlR [Staphylococcus epidermidis ATCC
           12228]
 gi|251810848|ref|ZP_04825321.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876146|ref|ZP_06285013.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366617|ref|ZP_06613294.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81842840|sp|Q8CP82|ARLR_STAES RecName: Full=Response regulator ArlR
 gi|27315563|gb|AAO04697.1|AE016747_194 putative response regulator ArlR [Staphylococcus epidermidis ATCC
           12228]
 gi|251805683|gb|EES58340.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295171|gb|EFA87698.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319386|gb|EFE59755.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329729376|gb|EGG65782.1| response regulator ArlR [Staphylococcus epidermidis VCU144]
 gi|329732898|gb|EGG69243.1| response regulator ArlR [Staphylococcus epidermidis VCU028]
 gi|329735341|gb|EGG71633.1| response regulator ArlR [Staphylococcus epidermidis VCU045]
          Length = 219

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            D G DD + KP    E+LAR+ A+ RR +   +  +   I +  D     V G    L 
Sbjct: 91  LDYGADDYIVKPFDIEELLARIRAVLRR-QPDKDVLDINGIIIDKDAFKVTVNGHQLELT 149

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           + E  +L  L  NR   + + QI   ++G ++  VE NVV+ +I  LR KL+       +
Sbjct: 150 KTEYDLLYVLAENRNHVMQREQILDHVWG-YNSEVETNVVDVYIRYLRNKLKPFNKEKSI 208

Query: 211 DSKRFLGYSI 220
           ++ R +GY I
Sbjct: 209 ETVRGVGYVI 218


>gi|17549661|ref|NP_523001.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431915|emb|CAD18593.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 226

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 17/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++I+D A V D     F   G+  EG+  L      E LQ +   + + +   L+  G 
Sbjct: 3   ILVIEDDARVSD-----FLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGM 57

Query: 59  KVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LEL + +RA  + VP++ ++    +   +     G DD + KP    E+LAR+ A+ R
Sbjct: 58  SGLELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLR 117

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R +    R +   ++V     D E       G+   L  +E   LE LM+  G+  ++ +
Sbjct: 118 RGR--EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRER 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I S ++G  ++ +  N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 176 ILSNVWGANEDPL-TNIVDVYVRRLRSKIDEGQPVPLLKTVRGLGYRLD 223


>gi|328943482|ref|ZP_08240947.1| response regulator [Atopobium vaginae DSM 15829]
 gi|327491451|gb|EGF23225.1| response regulator [Atopobium vaginae DSM 15829]
          Length = 245

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE---TGPIRVFSDGRDPEVQ 143
           L    SG DD + KP + + +LA +A++ RR + +S+ +A     G I +          
Sbjct: 105 LVCLSSGADDFIAKPYNPQILLAHIASVLRRVMPMSDKQASVLRCGTIELNLKTCTASAH 164

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           G+   L + E +IL  L+  + + V++TQI  A++   DE V++N +  ++S LR++L  
Sbjct: 165 GKTTELTKNELKILTLLIQRQTEVVSRTQIQEALWQ-SDEYVDDNTLTVNVSHLRQRLAY 223

Query: 204 KLGFDPVDSKRFLGYSI 220
                 V + R LGY I
Sbjct: 224 IGEPHAVVTHRGLGYCI 240


>gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
 gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
          Length = 234

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 10/117 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGR--------DPEVQG 144
           G DD + KP   RE+LAR+ AI+RRL+     R E  P  +   G            V G
Sbjct: 95  GADDYLTKPFSPREVLARMKAIFRRLEPRQQTREEDQPAEILQVGGIQADLTNFQVSVDG 154

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           E   L  +E  +L Y M  +G+ + +  + + I+  FD   +  +V+ HIS LR+KL
Sbjct: 155 EKIFLTPKEFELLVYFMKRKGRVIDRDTLLNRIWN-FDFDGQSRIVDVHISHLREKL 210


>gi|260438876|ref|ZP_05792692.1| DNA-binding response regulator RegX3 [Butyrivibrio crossotus DSM
           2876]
 gi|292808715|gb|EFF67920.1| DNA-binding response regulator RegX3 [Butyrivibrio crossotus DSM
           2876]
          Length = 221

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 3/190 (1%)

Query: 33  EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92
           +F++ L    + D   I   L   G     L R+ R     P+I ++   +    L    
Sbjct: 33  DFKDTLDEMLKTDTELILLDLNLPGIDGQTLLRMYRKEKNTPVIIVTSKDTEMDELICMT 92

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
            G DD V+KP +   +L  + A+ RR     N      I +          G    L + 
Sbjct: 93  YGADDFVSKPYNPALLLLHIEAVLRRNGGDENVIRYRYITLNLSRSSISGNGNEIELSKN 152

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVD 211
           E RIL Y+  N GK V++  I + ++    E V++N +  +I+++R KL  +LG+ D + 
Sbjct: 153 ECRILNYMFRNSGKIVSRDDIMNYLWDDC-EFVDDNTLTVNITRVRHKLA-ELGYGDVIS 210

Query: 212 SKRFLGYSID 221
           +KR  GY I+
Sbjct: 211 TKRGQGYYIE 220


>gi|241763450|ref|ZP_04761504.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241367392|gb|EER61713.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 230

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 12/209 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +V  G      D G +++   S E  E +  +   D + I+  L       L
Sbjct: 3   LLLVEDDVMVASGIKLGLTDAGYAVDWVGSGERAEEVLRTESFDAAIIDIGL--PAMDGL 60

Query: 62  ELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           EL R +R    A S +P++ ++   +L   +   D G DD + KP    E+LAR+ A+ R
Sbjct: 61  ELTRRLRRPGMASSAMPVLILTARDALHDRVQGLDLGADDYMVKPFELPELLARLRALLR 120

Query: 118 RLKVSNNRAET-GPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R + +     + GP+ + + GR   V+     +V  L  RE  +LEYL+ +  K  +K +
Sbjct: 121 RSQAATTAVLSFGPLELDTAGRRASVRSGEIDQVIDLGPREWTVLEYLLIHAPKPASKDK 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  A+ G +D+ +  N VE ++S+LR KL
Sbjct: 181 LLQALTG-WDKEITPNAVEVYVSRLRGKL 208


>gi|170077600|ref|YP_001734238.1| two-component DNA binding response regulator [Synechococcus sp. PCC
           7002]
 gi|169885269|gb|ACA98982.1| Two-component DNA binding response regulator [Synechococcus sp. PCC
           7002]
          Length = 242

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++      
Sbjct: 71  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGGTG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G IR+ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVIHVGSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR-----------LKVSNNRAETGPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR            + S  R   G +++  D  +  +
Sbjct: 92  GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEARILIGDLKILPDSYEVYL 151

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 152 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 209


>gi|160937479|ref|ZP_02084840.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439548|gb|EDP17298.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC
           BAA-613]
          Length = 233

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 19/200 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LV +GY     +DG SL       FE +  S    D+  ++  +   G     L   IR 
Sbjct: 22  LVNEGYEVETFEDGKSL-------FEAFHASCP--DLIILDIMM--PGMDGFALCTAIRR 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
            S+VP+I +S   +    +     G DD + KP    E++ARV A++RR      R + G
Sbjct: 71  ESRVPIIIVSAKDAPMDRVTGITLGSDDYMVKPFLPLELVARVKALFRR--AGYIRQDAG 128

Query: 130 PIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              V ++       R   V G  F +   E   L+YLM  RG+ V+K  +   ++ L D 
Sbjct: 129 ETLVCANLSLDPRSRCMTVDGAHFSVTPTEFAFLQYLMERRGEAVSKQVLLKEVWELPDY 188

Query: 184 AVEENVVESHISKLRKKLRN 203
            ++  V +  + +LR+K R 
Sbjct: 189 DLDTRVADDLVKRLRRKFRE 208


>gi|92118758|ref|YP_578487.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801652|gb|ABE64027.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 221

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 103/232 (44%), Gaps = 31/232 (13%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-------GFNSLEFEEWLQSSAREDVSAIEAFLI 54
            +LI+D A+     +     +G++++       GF +L+  E   + A  DV   E    
Sbjct: 3   LLLIEDDAMFGKALVRGLKQNGMTIDWVRNGPDGFAALKRAE--HAIALLDVGLPEM--- 57

Query: 55  GKGEKVLELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
             G  VL   + +R  S+ P ++ I+    ++  +   D G DD + KP   R +LAR+ 
Sbjct: 58  -SGFDVL---KAMRGTSKAPPILIITARDQVEDMVTGLDLGADDYIVKPFELRALLARIR 113

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRV 168
           AI RR+   +N   T          DP      F      L  RE  +L  LM   G  +
Sbjct: 114 AIVRRVNARSNSVVTSKEITL----DPSTYIATFRGIESVLSAREFSVLHALMERPGTIL 169

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++QI S IYG + E V+ N V+  I  LRK    K G D + + R  G+ +
Sbjct: 170 SRSQIESRIYG-WSEEVQSNAVDVVIHGLRK----KYGKDIIRNIRGAGWMV 216


>gi|329768100|ref|ZP_08259609.1| hypothetical protein HMPREF0428_01306 [Gemella haemolysans M341]
 gi|328838255|gb|EGF87867.1| hypothetical protein HMPREF0428_01306 [Gemella haemolysans M341]
          Length = 222

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 6/156 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS        +   + G DD + KP     + A++ A+ RR+   N+  
Sbjct: 67  IRKISKVPIIFISSASDDMNIVMAMNIGADDFIEKPFKLVVLKAKIEALLRRVYNFNSSN 126

Query: 127 ETGPIR--VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                +  +F   +D  + +  +  L + E +IL  L+ NR K V++  I +A++   D 
Sbjct: 127 SLIVYKEVIFDINKDEIKYKDNIATLTKNESKILTILLENREKIVSREDIIAALWQS-DN 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            ++EN +  +I++LR KL++ +G D  + +K+  GY
Sbjct: 186 FIDENTLSVNINRLRAKLKS-IGIDEFITTKKGKGY 220


>gi|320335834|ref|YP_004172545.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319757123|gb|ADV68880.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 219

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 5/159 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L + +R +S  P++ +S   ++Q  +   ++G DD + KP    E+ AR++A+ RR  
Sbjct: 61  LDLVQALRQYSSTPVLVLSARSNVQERVAGLNAGADDYLTKPFAMPELDARISALLRR-T 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G   + +         +   L   E RILE +M    +  ++  I S +YG 
Sbjct: 120 AAGTGVNLGNTSLSTSSLTLTAGEQSTALTEHEARILELMMRTPDRVFSRADIESHLYGW 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
             E    N VE  IS+LRKKL  ++G D  V + R +GY
Sbjct: 180 --ETPNSNSVEVRISQLRKKLE-QVGSDLRVRTIRNVGY 215


>gi|310639947|ref|YP_003944705.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Paenibacillus polymyxa SC2]
 gi|309244897|gb|ADO54464.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Paenibacillus polymyxa SC2]
          Length = 224

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 30/187 (16%)

Query: 46  VSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105
           +  ++ F IGK        R+ + + ++P++ +S   S+   L   D   DD V KP H 
Sbjct: 54  LPGLDGFTIGK--------RLKKEYPELPILMLSARTSIDDKLQGLDFA-DDYVTKPFHP 104

Query: 106 REILARVAAIYRRL-KVSNNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEY 159
            E++AR+  + RR   VS    + G + VF        RD    GE   L  ++  I  Y
Sbjct: 105 DELIARMEILLRRSGSVSEESLQLGHLSVFPPDNRIVNRD---TGEEITLTGKQYHIFAY 161

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDP-----VDSK 213
           L+ + G+ + K Q++ A++G  D  ++ +  +  HI    + LR KL  DP     +++ 
Sbjct: 162 LLRHLGQIMTKEQMYEAVWG--DPYIDGDKTLMVHI----RHLREKLEIDPATPRIIETI 215

Query: 214 RFLGYSI 220
           R +GY +
Sbjct: 216 RGVGYRV 222


>gi|306833709|ref|ZP_07466836.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|304424479|gb|EFM27618.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
          Length = 226

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +  I +  +Q  +I ++    +   +   D+G DD + KP   +E+LAR+ ++ RR+   
Sbjct: 63  VQEIRQTGNQSHIIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRRVDTN 122

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
            ++N    G +   + G    V      L  +E ++LE+ M N GK+++  QIF+ ++  
Sbjct: 123 FTSNILTVGTV-TLNVGEQELVSQNTIRLAGKESKMLEFFMLNAGKKLSTDQIFNHVWAN 181

Query: 180 -LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D  ++   V  ++S LR+KL++      ++ +   GY +
Sbjct: 182 DKDDPEIDNGYVFIYVSYLRQKLKSIGANVVIEGEEMGGYEL 223


>gi|295398639|ref|ZP_06808664.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973127|gb|EFG48929.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 238

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 13/153 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  SQVP+I ++   S    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 61  LEVCRQIRKDSQVPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELMARVKANIRRTA 120

Query: 121 V------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           V             +N  E G + +  D       GE   L  RE  +L YL  +  + +
Sbjct: 121 VVAEPVVADEVTEKDNIIEIGDLLIHEDEYIASKNGEDVELTHREFELLHYLSQHINQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +  +   ++G +D   +   V+  + +LR+K+
Sbjct: 181 TREHLLQTVWG-YDYFGDVRTVDVTVRRLREKI 212


>gi|253999965|ref|YP_003052028.1| two component transcriptional regulator PhoB [Methylovorus sp.
           SIP3-4]
 gi|313201938|ref|YP_004040596.1| two component transcriptional regulator PhoB [Methylovorus sp.
           MP688]
 gi|253986644|gb|ACT51501.1| two component transcriptional regulator PhoB, winged helix family
           [Methylovorus sp. SIP3-4]
 gi|312441254|gb|ADQ85360.1| two component transcriptional regulator PhoB, winged helix family
           [Methylovorus sp. MP688]
          Length = 228

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           +P+I ++        +   + G DD V KP   RE+ AR+ A+ RR   +++++  E G 
Sbjct: 77  IPIIMLTARGEEADKVKGLEVGADDYVTKPFSPRELNARIKAVLRRRAPQMTDDPIEVGG 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEEN 188
           +R+          G    L   E R+L YLM+N  +  +++Q+   ++G  +F   VE+ 
Sbjct: 137 LRLDPVTHRVTGNGTTLDLGPTEFRLLHYLMSNPERVHSRSQVLDRVWGDRVF---VEDR 193

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            V+ HI +LR  L +    D + + R +GY
Sbjct: 194 TVDVHIRRLRLALADSGHEDLIQTVRGVGY 223


>gi|239944760|ref|ZP_04696697.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991225|ref|ZP_04711889.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448223|ref|ZP_06587613.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351170|gb|EFE78074.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 230

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 11/161 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR     + A
Sbjct: 69  IRKRTATPVIMVTARADVRSRIHGLNLGADDYVTKPYDTGELLARIHAVARRTSSGEDTA 128

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            T       GP+ +    R   V GE   L R+E  +L  L    G    + QI S ++ 
Sbjct: 129 PTPVAALRLGPVAIELPTRRVSVDGEEVQLTRKEFDLLALLAQRPGVVFRREQIISEVWR 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E      +E H++ LR KLR     + V   R +GY +
Sbjct: 189 TSWEGTGRT-LEVHVASLRSKLRLPTLIETV---RGVGYRL 225


>gi|229015978|ref|ZP_04172939.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022195|ref|ZP_04178745.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739126|gb|EEL89572.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745338|gb|EEL95379.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 225

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQKVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N R +     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220


>gi|209548309|ref|YP_002280226.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534065|gb|ACI54000.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 227

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 5/133 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFP 148
            ++G DD + KP    E+LARV A+ RR  V   +   +   + +    R+    G+   
Sbjct: 91  LEAGGDDYLTKPFAFSELLARVNALGRRPPVQEQKTVLKVADLELDLIRREARRAGQAIE 150

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207
           L  RE  +LE LM   G+ + KT +   ++   FD   + +VVE+HIS+LR K+      
Sbjct: 151 LQPREFTLLEVLMRGEGRVITKTMLLERVWDFHFDP--KTSVVETHISRLRAKVDRPFQA 208

Query: 208 DPVDSKRFLGYSI 220
             + + R  GYS+
Sbjct: 209 QLLHTVRNTGYSL 221


>gi|116074029|ref|ZP_01471291.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
 gi|116069334|gb|EAU75086.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
          Length = 229

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P+I I+    +   +   ++G DD + KP + RE+LAR  A+ RR +  S++  + G +
Sbjct: 78  LPVIMITARDEMDDRVAALEAGADDFIAKPFNVREVLARAKALLRRSQGFSSDVLQVGDL 137

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    R   + G    L  RE  +LE  M +  + +++ Q+   ++G  D   +ENVV+
Sbjct: 138 VLNGAERTCAINGTPLVLTVREFDLLECFMRHPRQALSRAQLIQHVWG-DDYFGDENVVD 196

Query: 192 SHISKLRKKL 201
            ++  LRKKL
Sbjct: 197 VYVRYLRKKL 206


>gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae
           TIGR4]
 gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54]
 gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae]
 gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae]
 gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
 gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54]
 gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141]
 gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368]
 gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 234

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 11/153 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120

Query: 119 -LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            + V    A++ P       + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 121 PMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 212


>gi|320527273|ref|ZP_08028458.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320132297|gb|EFW24842.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 221

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 98/209 (46%), Gaps = 19/209 (9%)

Query: 24  VSLEGFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
           ++LEGF+S       E E+ L++   + +    +   G G  V  + + I    Q+P+I 
Sbjct: 21  LNLEGFSSDYASGQKEAEQLLKTKQYQLLLLDVSLKDGDGFAVCNMAQKI----QLPVIF 76

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG 137
           +S     +T +   + G DD + KP   +E+L+R+  + RR            I+V  + 
Sbjct: 77  LSASSDEETVVRGLNIGADDYITKPFRPKELLSRIKNVLRRHTGHQTIILLDEIQVDIEK 136

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
              + + +   L   E ++L   + +RGK + + Q+   I+ +  + V +N +  +I +L
Sbjct: 137 AIVKKKEKEINLSALEYKLLTLFIDHRGKLLTRDQLLDEIWNIAGDFVNDNTITVYIKRL 196

Query: 198 RKKLRNKLGFDPVDSK-----RFLGYSID 221
           R+K+ +    DP + K     R LGY +D
Sbjct: 197 REKIED----DPTNPKIIKTVRGLGYRMD 221


>gi|291549217|emb|CBL25479.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 225

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 6/139 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I IS        +   + G DD V KP     + A++ A+ RR    + + 
Sbjct: 67  IRKISSVPVIFISSAADNMNIIMAMNMGGDDFVAKPFDLSVLTAKIQALLRRTYDLSGKV 126

Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G I    D       GE   L + E RIL+ LM N+G+ V++  + + ++   D
Sbjct: 127 PMLEHRGAILNLYD-TTMTYNGEKIELTKNEFRILQTLMENKGRVVSRDTLMTKLWET-D 184

Query: 183 EAVEENVVESHISKLRKKL 201
             +EEN +  ++ +LRKKL
Sbjct: 185 NYIEENTLTVNVGRLRKKL 203


>gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 230

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++D       ++G ++  F +   E+ L+   +E++  +   ++  G   L
Sbjct: 5   ILVIDDEKEIRDLLEINLKNEGYNV--FKASNGEKALEILDKEEIHLMVLDIMMPGMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P++ +S        +    +G DD V KP +H E+  R+ A+ RR   
Sbjct: 63  EVCRRVREKYNIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122

Query: 122 SNNRAET--GPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N + +     IR+ S   D       +      L  RE  IL  L +NRG+  +  +IF
Sbjct: 123 LNTKMQALDNIIRIESMIIDKSKHKVTIDDNEVSLTAREFEILYLLASNRGRVFSTEEIF 182

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   + ++   N V  H+S+LR KL   + G   + +   +GY I+
Sbjct: 183 EKVWKERYYQS--NNTVMVHMSRLRDKLEQYMEGNKIIHTVWGVGYKIE 229


>gi|213965336|ref|ZP_03393532.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium
           amycolatum SK46]
 gi|213951952|gb|EEB63338.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium
           amycolatum SK46]
          Length = 247

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S +P++ +S        ++  + G DD V KP    E+LAR+ +  RR  
Sbjct: 77  LEVLRSLRRWSDIPVLIVSARHDEAGKINALNEGADDYVTKPFSMGELLARLRSTMRRAS 136

Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                      +  G + V    R   V  E+  L  RE  IL YL+ +RG+ V K ++ 
Sbjct: 137 KVVVEEVPKVASADGHLMVDLAKRQVLVADELVHLTPREWDILVYLVQHRGELVTKLELL 196

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
            A++G   E  E N +  +IS+LR K+
Sbjct: 197 KAVWGDQYEK-ETNYLRVYISQLRHKI 222


>gi|254471766|ref|ZP_05085167.1| two-component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211958968|gb|EEA94167.1| two-component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 223

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 25/162 (15%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
           + P++ +S    +   +    +G DD + KP    E+LARV  + RR         L+VS
Sbjct: 69  ETPVLILSALSQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLSRRKAGPQVETKLQVS 128

Query: 123 N---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +R      R           G+   L  RE R+LEYLM + G+ V +T +   ++ 
Sbjct: 129 DLVLDRLAHSVTRA----------GQEIVLQPREFRLLEYLMKHAGQVVTRTMLLENVWD 178

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD   + NV++ HIS+LR K+     F  + + R  GYSI
Sbjct: 179 YHFDP--QTNVIDVHISRLRSKIDKGFDFPLLHTVRGAGYSI 218


>gi|194434141|ref|ZP_03066409.1| transcriptional regulatory protein CreB [Shigella dysenteriae 1012]
 gi|218708083|ref|YP_002415602.1| DNA-binding response regulator CreB [Escherichia coli UMN026]
 gi|256025318|ref|ZP_05439183.1| DNA-binding response regulator CreB [Escherichia sp. 4_1_40B]
 gi|293403071|ref|ZP_06647168.1| transcriptional regulatory protein creB [Escherichia coli FVEC1412]
 gi|298378597|ref|ZP_06988481.1| two-component system [Escherichia coli FVEC1302]
 gi|300896756|ref|ZP_07115262.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|301330244|ref|ZP_07222902.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301646920|ref|ZP_07246765.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307136599|ref|ZP_07495955.1| DNA-binding response regulator CreB [Escherichia coli H736]
 gi|331640443|ref|ZP_08341591.1| transcriptional regulatory protein CreB [Escherichia coli H736]
 gi|331661358|ref|ZP_08362282.1| transcriptional regulatory protein CreB [Escherichia coli TA143]
 gi|194417578|gb|EDX33679.1| transcriptional regulatory protein CreB [Shigella dysenteriae 1012]
 gi|218435180|emb|CAR16138.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli UMN026]
 gi|291429986|gb|EFF03000.1| transcriptional regulatory protein creB [Escherichia coli FVEC1412]
 gi|298280931|gb|EFI22432.1| two-component system [Escherichia coli FVEC1302]
 gi|300359412|gb|EFJ75282.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300843750|gb|EFK71510.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301074908|gb|EFK89714.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|320177680|gb|EFW52669.1| Two-component response regulator CreB [Shigella boydii ATCC 9905]
 gi|331040189|gb|EGI12396.1| transcriptional regulatory protein CreB [Escherichia coli H736]
 gi|331061273|gb|EGI33236.1| transcriptional regulatory protein CreB [Escherichia coli TA143]
 gi|332083394|gb|EGI88625.1| transcriptional regulatory protein creB [Shigella boydii 5216-82]
 gi|332098001|gb|EGJ02974.1| transcriptional regulatory protein creB [Shigella dysenteriae
           155-74]
          Length = 229

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|168180732|ref|ZP_02615396.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226949683|ref|YP_002804774.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668403|gb|EDT80382.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226842646|gb|ACO85312.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 226

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++  
Sbjct: 61  LEVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V+  + E     G + +    R          L  RE  +L+ LM N+   + ++ +   
Sbjct: 121 VTVKKDEDIIRCGLLSLDKMRRKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 181 VCG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|311108765|ref|YP_003981618.1| transcriptional regulator QseB 4 [Achromobacter xylosoxidans A8]
 gi|310763454|gb|ADP18903.1| transcriptional regulatory protein QseB 4 [Achromobacter
           xylosoxidans A8]
          Length = 238

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130
           VP++ ++   SL+  L  F  G DD + KP    E+ AR+ A+ +R K +   A    GP
Sbjct: 84  VPVLMLTARDSLEDKLAGFSHGADDYLTKPFALLEVEARLIALIQRAKGATVDAVRAFGP 143

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +   +  R   V G    L R+   I+E L+ + G+ V++ ++ S ++G  +E    + +
Sbjct: 144 LSYDTRNRAVSVNGNPVHLTRKASLIIEALLRDPGRVVSREELESTLWG--NEPPSSDAL 201

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            S +  LR+ L +  GFD +++    G+ +
Sbjct: 202 RSQVHLLRRALADA-GFDGIETIHGTGWRL 230


>gi|322434161|ref|YP_004216373.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161888|gb|ADW67593.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 226

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 2/159 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L RI R ++ VP++ ++   S++  +  F++G DD + KP    E+L R  A+ RR  V+
Sbjct: 63  LQRIRRTNTCVPVLMLTARDSVEDKVRMFENGADDYLTKPFAFAELLVRSKALLRRGPVN 122

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   T G + +    +  +  G+   L  +E  +LEYLM N  + +++  I   ++   
Sbjct: 123 RSSTMTVGELELDRLTQQVKRAGKRIELTAKEYSLLEYLMQNAERVLSRNMIIEHVWDQS 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + +  N+V+ ++  LR K+ +      + + R  GY I
Sbjct: 183 FDGI-TNIVDVYVRHLRAKVDDGHIIKLIRTVRGSGYMI 220


>gi|300785061|ref|YP_003765352.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794575|gb|ADJ44950.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 230

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD V KP    E++AR+ AI RR         T GP+ + ++G      G+   L   
Sbjct: 100 GADDYVTKPFDLAELIARIRAILRRTAGRPAGVLTAGPLALDAEGHQVTRAGQAIRLSAT 159

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           E R+L YLM N G+ V+K QI   ++   D   +  +V+++IS LR+K+
Sbjct: 160 EFRLLRYLMENAGRVVSKGQILDRVW-RDDFGGDAGIVDTYISYLRRKV 207


>gi|295108122|emb|CBL22075.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 230

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 13/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR    N +A
Sbjct: 67  IRKENSLPILMFTSKNDSVSKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 126

Query: 127 ETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
            T        +++  + R    +   F LP +E  +L Y   ++GK + K QI+  ++G 
Sbjct: 127 GTMQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 186

Query: 180 --LFDEAVEENVVESHISKLRKKL 201
              +D++   N++ + IS+LRKKL
Sbjct: 187 EYFYDDS---NIM-AIISRLRKKL 206


>gi|154495761|ref|ZP_02034457.1| hypothetical protein BACCAP_00040 [Bacteroides capillosus ATCC
           29799]
 gi|150274959|gb|EDN02007.1| hypothetical protein BACCAP_00040 [Bacteroides capillosus ATCC
           29799]
          Length = 248

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 57  GEKVLEL-PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   LEL  R+ +A    P++ ++    +   +D  D+G DD + KP    E+LAR+ A+
Sbjct: 79  GMDGLELVSRLRKAGITAPVLMVTALDGVSDRVDGLDAGADDYLTKPFAAEELLARIRAL 138

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR       +      +  D +   +QG      L +RE R+LE  + N G+ + +  +
Sbjct: 139 SRRPVQWEQSSALSRWGLELDVKLCTLQGPGGSCSLSKRESRLLEIFLRNAGQTMTRELL 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++G  D  VEE  ++++I  LR++L        + + R +GY ++
Sbjct: 199 LARVWG-PDAPVEEGNLDNYIHFLRRRLSAVGSGARIVTARGVGYRLE 245


>gi|118593184|ref|ZP_01550570.1| osmolarity response regulator [Stappia aggregata IAM 12614]
 gi|118434269|gb|EAV40924.1| osmolarity response regulator [Stappia aggregata IAM 12614]
          Length = 242

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 12/212 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +IDD A V+D   AL    G     F   +  +   S    D++ I+  L  KGE  
Sbjct: 9   VIAIIDDDADVRDTLSALMEASGFEPVAFQDSDGFKAAGSPQDFDLALIDLRL--KGESG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L L   IR  S++P++ ++        +   ++G DD + KP + RE++AR+ A+ RR  
Sbjct: 67  LSLAIHIRETSELPIVMLTGVGDEIDKIIGLETGADDYLMKPFNPRELVARIRAVLRRYG 126

Query: 120 -KVSNNRAETGPIRVFSDGRDP-------EVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             VS  +A      VF D R         +  G+  PL   E  +LEY + N  + + +T
Sbjct: 127 HGVSAVKAGKDQEIVFGDKRVNLKRRELLDGNGDEIPLTNAEYVLLEYFVKNPDRIIPRT 186

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   I       V+   ++  I +LR+K+ N
Sbjct: 187 DLMREIGSDMQRYVDRT-IDVLILRLRRKIEN 217


>gi|91774787|ref|YP_544543.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91708774|gb|ABE48702.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 237

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 2/132 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGP 130
           +P++ I++    +  +    SG DD ++KP+  RE+ AR+ A+ RRL     + E   G 
Sbjct: 74  IPILMITNRSDERDVVHGLTSGADDFMSKPVRVRELHARINALLRRLYPQQGQQEFVWGN 133

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
            +     +  E  G    L  +E  +  +L  N+G+ +++  I   I+G+    ++   +
Sbjct: 134 YKCNVAQQRFEHHGVPVALKNKEFELALFLFQNQGRLLSRQHIQEQIWGMQSVDLQTRTL 193

Query: 191 ESHISKLRKKLR 202
           ++HIS +R KL+
Sbjct: 194 DTHISAIRSKLK 205


>gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 236

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR+    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR 
Sbjct: 70  LEVLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRA 129

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 A +    G + +  D R+    G    L   E  +L +LM N  + ++K QI  
Sbjct: 130 GAQQATASSTLVVGDLELDEDSREVFRAGREVTLTATEFELLRFLMRNPRRVLSKAQILD 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            ++  +D   + NVVE +IS LRKK+    G +P + + R  GY +
Sbjct: 190 RVWN-YDFGGQANVVELYISYLRKKI--DAGHEPMIHTMRGAGYVL 232


>gi|22125161|ref|NP_668584.1| DNA-binding transcriptional activator KdpE [Yersinia pestis KIM 10]
 gi|45442274|ref|NP_993813.1| DNA-binding transcriptional activator KdpE [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597236|ref|YP_071427.1| DNA-binding transcriptional activator KdpE [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808412|ref|YP_652328.1| DNA-binding transcriptional activator KdpE [Yersinia pestis
           Antiqua]
 gi|108811338|ref|YP_647105.1| DNA-binding transcriptional activator KdpE [Yersinia pestis
           Nepal516]
 gi|145598867|ref|YP_001162943.1| DNA-binding transcriptional activator KdpE [Yersinia pestis
           Pestoides F]
 gi|149365419|ref|ZP_01887454.1| two-component regulatory protein response regulator KdpE [Yersinia
           pestis CA88-4125]
 gi|153948878|ref|YP_001400083.1| DNA-binding transcriptional activator KdpE [Yersinia
           pseudotuberculosis IP 31758]
 gi|162420859|ref|YP_001607903.1| DNA-binding transcriptional activator KdpE [Yersinia pestis Angola]
 gi|165925364|ref|ZP_02221196.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937198|ref|ZP_02225763.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166008140|ref|ZP_02229038.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212385|ref|ZP_02238420.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399338|ref|ZP_02304862.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421313|ref|ZP_02313066.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423783|ref|ZP_02315536.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469457|ref|ZP_02334161.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           FV-1]
 gi|170023401|ref|YP_001719906.1| DNA-binding transcriptional activator KdpE [Yersinia
           pseudotuberculosis YPIII]
 gi|186896337|ref|YP_001873449.1| DNA-binding transcriptional activator KdpE [Yersinia
           pseudotuberculosis PB1/+]
 gi|218929761|ref|YP_002347636.1| DNA-binding transcriptional activator KdpE [Yersinia pestis CO92]
 gi|229895558|ref|ZP_04510729.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Yersinia pestis Pestoides A]
 gi|229898812|ref|ZP_04513957.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901586|ref|ZP_04516708.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Yersinia pestis Nepal516]
 gi|270489772|ref|ZP_06206846.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           KIM D27]
 gi|294504480|ref|YP_003568542.1| two-component regulatory protein response regulator KdpE [Yersinia
           pestis Z176003]
 gi|21958023|gb|AAM84835.1|AE013729_3 regulator of kdp operon (transcriptional effector) [Yersinia pestis
           KIM 10]
 gi|45437138|gb|AAS62690.1| two-component regulatory protein response regulator KdpE [Yersinia
           pestis biovar Microtus str. 91001]
 gi|51590518|emb|CAH22158.1| two-component regulatory protein response regulator KdpE [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774986|gb|ABG17505.1| two-component regulatory protein response regulator KdpE [Yersinia
           pestis Nepal516]
 gi|108780325|gb|ABG14383.1| two-component regulatory protein response regulator KdpE [Yersinia
           pestis Antiqua]
 gi|115348372|emb|CAL21307.1| two-component regulatory protein response regulator KdpE [Yersinia
           pestis CO92]
 gi|145210563|gb|ABP39970.1| two-component regulatory protein response regulator KdpE [Yersinia
           pestis Pestoides F]
 gi|149291832|gb|EDM41906.1| two-component regulatory protein response regulator KdpE [Yersinia
           pestis CA88-4125]
 gi|152960373|gb|ABS47834.1| KDP operon transcriptional regulatory protein KdpE [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353674|gb|ABX87622.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           Angola]
 gi|165915061|gb|EDR33673.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922971|gb|EDR40122.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992522|gb|EDR44823.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206316|gb|EDR50796.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960802|gb|EDR56823.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051842|gb|EDR63250.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057953|gb|EDR67699.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169749935|gb|ACA67453.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186699363|gb|ACC89992.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681515|gb|EEO77609.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Yersinia pestis Nepal516]
 gi|229688360|gb|EEO80431.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229701364|gb|EEO89392.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Yersinia pestis Pestoides A]
 gi|262362528|gb|ACY59249.1| two-component regulatory protein response regulator KdpE [Yersinia
           pestis D106004]
 gi|262366467|gb|ACY63024.1| two-component regulatory protein response regulator KdpE [Yersinia
           pestis D182038]
 gi|270338276|gb|EFA49053.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis
           KIM D27]
 gi|294354939|gb|ADE65280.1| two-component regulatory protein response regulator KdpE [Yersinia
           pestis Z176003]
 gi|320016103|gb|ADV99674.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 209

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 20/159 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I +S   + +  +   D+G DD ++KP    E+LARV    RR    +  +
Sbjct: 51  LRQWSAIPIIVLSARNNEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGAS 107

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  P+  F+D       R     GE   L   E R+L  L+AN GK + + Q+ + ++G 
Sbjct: 108 QESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLTALLANAGKVITQRQLLNQVWG- 166

Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216
                  N VE H   LR     LR KL  DP   K  L
Sbjct: 167 ------PNYVE-HSHYLRIYMGHLRQKLEADPTRPKHLL 198


>gi|325264313|ref|ZP_08131044.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030384|gb|EGB91668.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 231

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 9/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------L 119
           IR ++ +P+I +S        +   + G DD V KP +  E++ARV +  RR       +
Sbjct: 67  IRENNSIPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQLGGSV 126

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K  + R  E G + +  D ++  V GEV  L   E  IL  LM N+G+  +  QI+ +I+
Sbjct: 127 KEKSERVYEVGGLAINDDLKEVTVDGEVVKLTPIEYNILLLLMKNQGRVFSIDQIYESIW 186

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
              D    +N V  HI  +R+K+
Sbjct: 187 N-EDAIGADNTVAVHIRHIREKI 208


>gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 223

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 8/147 (5%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IRA  +  P+I ++   S+   +   D G +D V KP    E+LARV A  R +
Sbjct: 61  LEVLRRIRATDTSTPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLRTV 120

Query: 120 KVSNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + S      G +     +V    R+     E   L  +E  +L Y + N+G+ + + QI 
Sbjct: 121 Q-SGTEKNAGVLTVNDWKVNEKTREVSRGDEHVDLTPKEFDLLVYFIENKGQALNREQIL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
           + ++G FD   + N+V+ ++  LRKKL
Sbjct: 180 NRVWG-FDYYGDTNIVDVYVRHLRKKL 205


>gi|311106814|ref|YP_003979667.1| transcriptional regulator QseB 3 [Achromobacter xylosoxidans A8]
 gi|310761503|gb|ADP16952.1| transcriptional regulatory protein QseB 3 [Achromobacter
           xylosoxidans A8]
          Length = 220

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 35/235 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE----AFLI--- 54
            +L++D A++ D         G  ++         W++  A+  ++ +E    A L+   
Sbjct: 3   VLLVEDDAMLGDAVHTSLAQSGADVQ---------WVRDVAQARLALVEHGFHAVLLDLG 53

Query: 55  ---GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
              G G  VL+  R    +   P++ ++    L   +   D+G DD + KP    E+LAR
Sbjct: 54  LPDGSGLAVLKHLRA--RYDATPVLILTARDRLSERIQGLDAGADDYIVKPFQLDELLAR 111

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGK 166
           + A+ RR    ++ A    +R      +P  +     G    L   E R L  LM   G 
Sbjct: 112 LRAVVRR----SSNAVVSALRCRDVVLEPAKRAVTRDGVEVSLSAHEYRTLLALMERIGH 167

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            V++ Q+ +A+YG    A+E N V  +I +LR+KL +KL    + +   LGY I+
Sbjct: 168 TVSREQLEAAVYG-DSGAIESNTVAVYIHQLRRKLGDKL----ILTVHGLGYRIE 217


>gi|310827668|ref|YP_003960025.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308739402|gb|ADO37062.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 222

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 4/138 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR +   P+I +S        +  F+ G+DD V KP   +E++ RV AI +R    + + 
Sbjct: 67  IRKYKDTPVIMLSARGEEYDRIHGFELGIDDYVVKPFSPKELMMRVGAILKRRGGAQENK 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  + G + V   GR   + G+   +  +E  +  Y++ NRG  + + ++ + ++G +D 
Sbjct: 127 DVVKIGDLEVDFAGRRVTISGKPVEMTPKEYDLFFYMVRNRGIALTREKLITNVWG-YDF 185

Query: 184 AVEENVVESHISKLRKKL 201
             ++  +++HI  LRK L
Sbjct: 186 YGDDRTLDTHIKLLRKSL 203


>gi|264678818|ref|YP_003278725.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262209331|gb|ACY33429.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 214

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R  R   ++P++ ++   ++   ++   +G DD + KP    E+ AR+ A+ RR    
Sbjct: 53  LARWRRQGLELPVLVLTARDAVDQRIEGLQTGADDYLVKPFDLHELAARLHALLRRAAGR 112

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    G ++V         +G +  L RRE  +L  L+ + G+ ++  Q+  ++YG +
Sbjct: 113 TVDWIVLGDVKVDLAAGQAIREGSIVDLSRREWALLRALLQSPGRVLSLEQLRDSLYG-Y 171

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VE N V  H+  LR+    KLG D V++ R +G+ +
Sbjct: 172 SLDVESNAVNVHVHHLRR----KLGSDMVETVRGVGFRL 206


>gi|238922318|ref|YP_002935832.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
 gi|238873990|gb|ACR73698.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
          Length = 233

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 7/183 (3%)

Query: 39  QSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           Q  A  DV  ++ +L  G G    ++ R IR H    +I ++      + +   D G DD
Sbjct: 50  QEEATIDVFLLDVYLPDGNG---FDVCRKIREHGSQIIIFLTSCDDEDSIIKGLDCGGDD 106

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRI 156
            V KP    E+++R+ A  RR+    +  + G + V F +        ++   P  E  +
Sbjct: 107 YVVKPFRVAELVSRIMANVRRISGGTDIYKDGTLTVDFRNKSVTHADKQICVSPT-EFHV 165

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRF 215
           LE L+ N+G  V +   F  ++  +   VE+N +   +S+L+ KL N+  G   +++ R 
Sbjct: 166 LEILINNKGLIVRRDTFFQKMWDRYGTFVEDNTLTVTVSRLKTKLGNREDGRAYIETIRG 225

Query: 216 LGY 218
           +GY
Sbjct: 226 IGY 228


>gi|258404600|ref|YP_003197342.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
 gi|257796827|gb|ACV67764.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
          Length = 230

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 12/202 (5%)

Query: 28  GFNSLEFEEWLQ-----SSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDY 81
           GF  L  E   Q     SSA  D+  ++  L GK G +V    R   +   +P+I ++  
Sbjct: 27  GFRVLTAENGFQALDVLSSAPVDLVVLDLMLPGKDGLEVCRELRSRESTKHLPVIMLTAK 86

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGR 138
                 +   + G DD V KP   RE+L R  A+ RR K         E+G +RV     
Sbjct: 87  GDEVDRIVGLELGADDYVVKPFSPRELLLRAKAVMRRGKPQPEEETLWESGGLRVDFGTY 146

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V GE   L   E R+L +L+ +RGK   + Q+ + ++G   E      V++H+ +LR
Sbjct: 147 KVTVDGEDRELTATEFRLLVHLIRSRGKVQTRDQLLNKVWGYEFEGYART-VDTHVRRLR 205

Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220
            K+        V++ R +GY +
Sbjct: 206 HKIEPYAAI--VETVRGVGYRL 225


>gi|187932998|ref|YP_001885393.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187721151|gb|ACD22372.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 234

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           G DD + KP   RE+LARV A+ RR      + NN  E+  +++  D  +  +  +   L
Sbjct: 99  GADDYITKPFSVRELLARVKAVLRRTYPGADIENNSYESKGLKIDFDRHEVFINNQKVEL 158

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             +E  +L+ L+ N+GK + +  +   I+G ++   E   V+ HI  LRKK+
Sbjct: 159 TLKEFDLLKILIKNKGKILQRETLLDKIWG-YEYIGETRTVDVHIRYLRKKI 209


>gi|188996802|ref|YP_001931053.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931869|gb|ACD66499.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 214

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 100/201 (49%), Gaps = 8/201 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
           ++I+D  L+ +       ++G+  L   N  + EE L S +  DV  ++  L   KGE +
Sbjct: 4   LIIEDDLLLGESLKDYLENNGIECLWISNERKLEEAL-SLSEFDVIVLDLILRYSKGEDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R    + + P++ ++   S++     F+ G DD + KP   +E L R+ A+ +R  
Sbjct: 63  LRNLR--NKNVKTPILIMTAKNSIKDKETCFNLGADDYIIKPFDPKEFLLRIKALSKRAH 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +   + + G + +  + +     G+   L +    +L YL+ NRGK V+   I + ++  
Sbjct: 121 LP-EKIKIGDVEIDLENQIVLKDGKEVKLTKTAWTLLYYLIKNRGKVVSNENILNYVW-- 177

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D+AV + V+ ++I +LRK L
Sbjct: 178 HDKAVGDEVIRAYIKELRKIL 198


>gi|170701551|ref|ZP_02892501.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170133545|gb|EDT01923.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 224

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 10/167 (5%)

Query: 41  SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           SA  D   ++  L G  G  +L   R +   +  P++ +S    +   +    +G DD +
Sbjct: 42  SASYDAITLDRMLPGADGLAILTAMRTVGIDT--PVLMLSALGDVDERIRGLRAGGDDYL 99

Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERR 155
            KP    E+ AR+  + RR + S    +T    G + +    R      +  PL   E R
Sbjct: 100 TKPFDSGELSARIEVLLRRRQASGVPQQTLLTVGALELDLISRCARRGVDEIPLLPTEFR 159

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201
           +LE++M N G+ + +T +F A++G  FD     N+++ H+ +LRKK+
Sbjct: 160 VLEFMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIDVHMGRLRKKI 204


>gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545]
          Length = 234

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 11/153 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120

Query: 119 -LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            + V    A++ P       + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 121 PMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 212


>gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
 gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 233

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 13/147 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR  S +P+I ++    +   ++  D G DD + KP    E+ AR+     R+ +
Sbjct: 67  EVCKIIRKTSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARI-----RVAL 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQIF 174
            N    +    ++ D     ++  +         L + E  +  YL+ N+   V++ +I 
Sbjct: 122 RNKSNFSNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
           + ++G +D   EE +V+ +I+ LRKK+
Sbjct: 182 NEVWG-YDYMGEEKIVDVYINALRKKI 207


>gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 228

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 13/147 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR  S +P+I ++    +   ++  D G DD + KP    E+ AR+     R+ +
Sbjct: 62  EVCKIIRKTSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARI-----RVAL 116

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQIF 174
            N    +    ++ D     ++  +         L + E  +  YL+ N+   V++ +I 
Sbjct: 117 RNKSNFSNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKIL 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
           + ++G +D   EE +V+ +I+ LRKK+
Sbjct: 177 NEVWG-YDYMGEEKIVDVYINALRKKI 202


>gi|291287945|ref|YP_003504761.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885105|gb|ADD68805.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 224

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R IR  S +P+I ++        L   + G DD + KP   RE++AR+ A+ RR  
Sbjct: 62  LDICRGIRKKSALPIIMLTAKVEEIDRLIGLELGADDYICKPFSPREVVARLKAVLRRTS 121

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + ++ +       GE   L R E  +L  +  + G   +++ + S+++
Sbjct: 122 PEKPVQSISIGSLTIYPELYKVSAGGEDIVLTRSEFMLLLTMAKHPGVVYSRSDLISSVH 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G   E  E   V+SHI  LRKKL   +  + + +   +GY I+
Sbjct: 182 GYEFEGYERT-VDSHIKNLRKKLSEFVNDNIIHTIYGVGYKIE 223


>gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+ +  S+VP+I ++    +   +   D+G DD + KP +  E+LARV A  RR     N
Sbjct: 68  RLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR-----N 122

Query: 125 RAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             E   +  F D        EVF       L  +E  +LEYLM++  + +++ QI   ++
Sbjct: 123 HEEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   + N++E ++  LR KL  +     + + R +GY +
Sbjct: 183 G-YDFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223


>gi|170684107|ref|YP_001746856.1| DNA-binding response regulator CreB [Escherichia coli SMS-3-5]
 gi|218703147|ref|YP_002410776.1| DNA-binding response regulator CreB [Escherichia coli IAI39]
 gi|170521825|gb|ACB20003.1| transcriptional regulatory protein CreB [Escherichia coli SMS-3-5]
 gi|218373133|emb|CAR21027.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli IAI39]
          Length = 229

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
 gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
          Length = 232

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS---GVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++++ +  LI I    + +  +D  +    G DD + KP    E++ARV  + RR
Sbjct: 64  EVCRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRR 123

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +++    +   G + +  + +   ++G    L   E R+LE L    G+ V++ ++   
Sbjct: 124 TRMTEETRQITNGDLVMDIENQWVMLRGNSLDLSPTEFRLLELLAHRFGRTVSRDELLGR 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           I+ L+    +   V+ HIS+LRKKL  NK     + + R  GY I W
Sbjct: 184 IWNLY--GGDTRTVDVHISRLRKKLDDNKHPALLIQTLRGRGYRITW 228


>gi|294627904|ref|ZP_06706483.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666844|ref|ZP_06732076.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292597818|gb|EFF41976.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603361|gb|EFF46780.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 229

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           ++P+I ++        +   ++GVDD V KP   RE+LAR+ A+ RR +  +        
Sbjct: 76  EIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVG 135

Query: 132 RVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           ++  DG    V     P+P    E R+L + M +  +   +TQ+   ++G     VEE  
Sbjct: 136 KLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERT 194

Query: 190 VESHISKLRKKL 201
           ++ HI +LRK L
Sbjct: 195 IDVHIRRLRKTL 206


>gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 226

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 18  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   +  R  
Sbjct: 67  RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPAFTRLT 126

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + R +GY +
Sbjct: 185 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|126733777|ref|ZP_01749524.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126716643|gb|EBA13507.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 226

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 10/163 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S VP++ ++        +   + G DD V+KP   RE++ARV AI +R  
Sbjct: 59  LEVCRALRKTSDVPILFLTARADEIDRVVGLELGADDYVSKPFSPRELVARVRAILKR-- 116

Query: 121 VSNNR-AETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            SN   AE   +R      DP      V+     L  RE  +LE L+A     +++ Q+ 
Sbjct: 117 -SNGEVAEQVVMRRGVISVDPARHLCHVKDATVTLTSREMDLLERLIARPDHVMSRPQLV 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
            AIYG  +  V +  ++SH+  LR KL      D +++   +G
Sbjct: 176 DAIYG-TNVNVSDRTMDSHLRNLRSKLGKAGCADAIETVHGVG 217


>gi|6318168|emb|CAB60254.1| MrsR2 protein [Bacillus sp. HIL-Y85/54728]
          Length = 240

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 14/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR+H+ VP++ ++   +    L  F  G DD + KP +  EI+ARV A   +LK +   +
Sbjct: 72  IRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKA---QLKRTTQLS 128

Query: 127 ETGPIRVFSDGR----DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + P++   D      DP      V G     P +E ++L Y   +  + ++K QI+  +
Sbjct: 129 SSYPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIYKDV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G F     ++ V  H+ +LR+KL
Sbjct: 189 WGEFYGG--DSTVMVHVRRLREKL 210


>gi|57866897|ref|YP_188567.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis
           RP62A]
 gi|242242696|ref|ZP_04797141.1| DNA-binding response regulator [Staphylococcus epidermidis W23144]
 gi|81674611|sp|Q5HPC3|ARLR_STAEQ RecName: Full=Response regulator ArlR
 gi|57637555|gb|AAW54343.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis
           RP62A]
 gi|242233832|gb|EES36144.1| DNA-binding response regulator [Staphylococcus epidermidis W23144]
 gi|319400771|gb|EFV88990.1| response regulator [Staphylococcus epidermidis FRI909]
          Length = 219

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            D G DD + KP    E+LAR+ A+ RR +   +  +   I +  D     V G    L 
Sbjct: 91  LDYGADDYIVKPFDIEELLARIRAVLRR-QPDKDVLDINGIIIDKDAFKVTVNGHQLELT 149

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           + E  +L  L  NR   + + QI   ++G ++  VE NVV+ +I  LR KL+       +
Sbjct: 150 KTEYDLLYVLAENRNHVMQREQILDHVWG-YNSEVETNVVDVYIRYLRNKLKPFNKEKSI 208

Query: 211 DSKRFLGYSI 220
           ++ R +GY I
Sbjct: 209 ETVRGVGYVI 218


>gi|84578942|dbj|BAE72909.1| two-component response regulator mutated protein M3-f
           [Streptococcus pyogenes]
          Length = 228

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIPTVRGMGYVI 225


>gi|119774241|ref|YP_926981.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766741|gb|ABL99311.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 222

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 2/111 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            D+G DD V KP   RE+ ARV A+ RRL      A T  ++V   G      G+   L 
Sbjct: 92  LDTGADDYVCKPYSARELTARVRAVLRRLDGKLTAAGT-SLKVDESGLSISFGGQTVVLT 150

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E R+   L +   +  +++QI   +Y  F   + +  V+SHI  LRKKL
Sbjct: 151 ALEFRLFNLLYSQPNRIYSRSQILDLLYSDF-RVLSDRTVDSHIRNLRKKL 200


>gi|315924292|ref|ZP_07920515.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622363|gb|EFV02321.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 204

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + IR      P++ ++   ++   +   D G DD + KP   +E+ AR+ A+ RR 
Sbjct: 42  LEILKEIRDRDITTPVLMLTAKGTVDDKVKGLDLGADDYLVKPFSAKELFARIRALSRRP 101

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++     +   I   +     + + E + L  +E +ILE L+    +   + QI   +
Sbjct: 102 DNEIKGECIDFENISFNTKKNTLQTESEEYKLSVKEAKILEMLIKRPNQVFTREQILDRV 161

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G FD+ V EN +E ++  LRKKL +      +D+ R +GY++
Sbjct: 162 WG-FDKEVNENNIEIYVHNLRKKLADTNV--KIDTIRGVGYTM 201


>gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 239

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 19/165 (11%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----------VS 122
            P+I ++   + +  +     G DD + KP    E+LARV+A+ RR+             
Sbjct: 71  TPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSGHVEEVKTPDQQ 130

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N    G + ++ +  +  + G+   L  +E  +L YL    G  + +  + + ++G FD
Sbjct: 131 GNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRDDLMNVVWG-FD 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSIDWN 223
               +  V+ H+S LRKKL      DP    +DS R +GY +  N
Sbjct: 190 YIGGQRTVDVHVSSLRKKLE----LDPESVHIDSIRGVGYKLVVN 230


>gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597]
 gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564]
 gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564]
 gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597]
          Length = 235

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 121 VSN--------NRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +++        N+    + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LASVDNQESDENKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213


>gi|239831231|ref|ZP_04679560.1| Transcriptional regulatory protein pmrA [Ochrobactrum intermedium
           LMG 3301]
 gi|239823498|gb|EEQ95066.1| Transcriptional regulatory protein pmrA [Ochrobactrum intermedium
           LMG 3301]
          Length = 221

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D  ++ DG     G  G +++  ++    E   ++   +   ++  L  G G  +
Sbjct: 3   ILVVEDDTILLDGLTVGLGLAGFTVDAVSTCCDAEAALAAQNYNAVVLDLMLPDGSGLDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R  R   + P++ ++    +   +   D+G DD V KP    E+ ARV A+ RR  
Sbjct: 63  LKSMR--RGRDETPVLLLTARDQVPERIAGLDAGADDYVGKPFDLHELAARVRAVARRGA 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N   E   + +          GE   L RRE  IL  LM       +K+ +  A+YG
Sbjct: 121 GRANALLEWRGVELDPAEMSVRFHGEPVRLTRREFSILRTLMERPAATFSKSSLEEALYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E VE N VE HI      LR+KLG D +++ R +GY +
Sbjct: 181 -WQEEVESNAVEVHI----HHLRSKLGSDYIETVRGVGYRL 216


>gi|255280985|ref|ZP_05345540.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
 gi|255268433|gb|EET61638.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
          Length = 224

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 4/158 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+ P+I IS        +   + G DD + KP     + A++ A+ RR        
Sbjct: 68  IRKISKAPVIFISSASDDMNIIMAVNYGADDFLAKPFELTVLTAKIQAVLRRTYDFAGQT 127

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E     +  D        +V  L + E RIL  LM N+G+ V++  I + ++   D 
Sbjct: 128 SILEHRGAVLNMDNTTLLYDDKVVELTKNEYRILRILMENKGRVVSRDTIMARLWET-DS 186

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++N +  ++++LRKKL     +D + +K+ +GY ++
Sbjct: 187 FIDDNTLTVNVTRLRKKLEQAGLYDYIVTKKGIGYLVE 224


>gi|110833027|ref|YP_691886.1| phosphate regulon transcriptional regulatory protein phoB
           [Alcanivorax borkumensis SK2]
 gi|110646138|emb|CAL15614.1| Phosphate regulon transcriptional regulatory protein phoB
           [Alcanivorax borkumensis SK2]
          Length = 234

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 11/154 (7%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           ++VP+I ++        +   D G DD + KP   RE+++R+ A+ RR   +++ A    
Sbjct: 76  NEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLRR---ASSVAAEKA 132

Query: 131 IRVFSDGRDP---EVQGEVFPLPR--RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           I V     DP    +     P+     E R+LE+ M+++ +  ++TQ+   ++G  +  V
Sbjct: 133 IEVEGLCLDPVSHRISANDSPVDMGPTEYRLLEFFMSHQERAYSRTQLLDQVWGA-NVYV 191

Query: 186 EENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           E+  ++ HI +LRK L    G+D  + + R  GY
Sbjct: 192 EDRTIDVHIRRLRKAL-APFGYDRFIQTVRGTGY 224


>gi|16079696|ref|NP_390520.1| two-component response regulator YrkQ [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310574|ref|ZP_03592421.1| hypothetical protein Bsubs1_14456 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314898|ref|ZP_03596703.1| hypothetical protein BsubsN3_14377 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319820|ref|ZP_03601114.1| hypothetical protein BsubsJ_14293 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324099|ref|ZP_03605393.1| hypothetical protein BsubsS_14427 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1731135|sp|P54443|YRKP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yrkP
 gi|1303715|dbj|BAA12371.1| YrkP [Bacillus subtilis]
 gi|2635088|emb|CAB14584.1| two-component response regulator [YrkQ] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 231

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 7/150 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  + IR  S VP++ ++   S     +   +G DD + KP    E+ ARV A  RR  
Sbjct: 61  IETCQHIRKSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYT 120

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   + E        G +RV  +  +   + +   L   E RIL+ LM  R K  +   I
Sbjct: 121 IYQEKKEQEETFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + +++G        N V  HI KLR K+ +
Sbjct: 181 YESVWGQPYFYCSNNTVMVHIRKLRSKIED 210


>gi|83749689|ref|ZP_00946669.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|207724268|ref|YP_002254665.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207739009|ref|YP_002257402.1| two component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|300697089|ref|YP_003747750.1| DNA-binding response regulator in two-component regulatory system
           with BasS (basR) [Ralstonia solanacearum CFBP2957]
 gi|83723651|gb|EAP70849.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|206589484|emb|CAQ36445.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206592380|emb|CAQ59286.1| two component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|299073813|emb|CBJ53334.1| Putative DNA-binding response regulator in two-component regulatory
           system with BasS (basR) [Ralstonia solanacearum
           CFBP2957]
          Length = 221

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 14/203 (6%)

Query: 28  GFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           G+N+      ++ ++W+ S+  + +        G+G   LE  R   A S VP+I  S  
Sbjct: 25  GYNTTWVRRLMDAQKWMTSNTFDAIVLDLGLPDGEGHVFLEELRA--AQSDVPVIIASAR 82

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140
            +L   L   D G DD + KP    E++AR+ A+ RR    S NR   G + V    +  
Sbjct: 83  DALSERLKGLDEGADDFLVKPFPVDELVARLRAVLRRHAGQSTNRWSVGSLVVEPSQKRV 142

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
              G V  L  RE ++L  L+    + V +  +  A+Y   +  V  N +E  I      
Sbjct: 143 TQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREGNR-VSANALEVVI----HH 197

Query: 201 LRNKLGFDPVDSKRFLGYSIDWN 223
           LR KLG   + + R +GY I  N
Sbjct: 198 LRGKLGEGVIQTIRGVGYMIGGN 220


>gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus
           amyloliquefaciens LL3]
          Length = 250

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 3/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   +R+ + +P++ ++        +  F SG DD + KP    E+ ARV A+ +R +
Sbjct: 86  FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 145

Query: 121 VSNNRAET-GPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  +  T G + +    R      G    LPRRE  +L  L     K  ++  +   I+
Sbjct: 146 ITAEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIW 205

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G FD   +E  V+ HI +LR++   K     + + R LGY
Sbjct: 206 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGY 244


>gi|225386953|ref|ZP_03756717.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme
           DSM 15981]
 gi|225046965|gb|EEG57211.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme
           DSM 15981]
          Length = 231

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 14/211 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DD+ +V+   I L G+    ++ ++  E  E+L+S    D+  I+  + G     
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGYEVLEYLESH-DADLLIIDVMMPGLDGIR 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L   +R +S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 63  TTLK--VRENSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 120

Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              N  +         G +++  D ++  V G+   L   E  IL  L+ N GK  +  +
Sbjct: 121 QLGNLNQQPDGQVYKCGGLQINDDNKEVTVDGDPIKLTPIEYNILLLLVKNAGKVFSIDE 180

Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKLR 202
           I+  I+   +EA+  +N V  HI  +R+K+ 
Sbjct: 181 IYEQIWN--EEAIGADNTVAVHIRHIREKIE 209


>gi|254425192|ref|ZP_05038910.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192681|gb|EDX87645.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 250

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 88/164 (53%), Gaps = 9/164 (5%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +RA   + P+I ++D  ++   +   ++G +D ++ P    E+LAR+ A    L
Sbjct: 82  LEICQRLRASQGEAPIILLTDQDNVNQRIAGLEAGANDCLSLPCDREELLARIHA--NLL 139

Query: 120 KVSNNRAETGPIR---VFSDGRDPEV-QGEVF-PLPRRERRILEYLMANRGKRVAKTQIF 174
           +  ++R E+  +R   V  + R  EV +G+ F  L  +E  +LEYLM +  + + ++QI 
Sbjct: 140 RNQSSRLESAVLRCADVQLNRRTREVFRGDRFIRLTAKEFDLLEYLMCHYFQVLTRSQIL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++G ++     N++E +I  LR+KL        V + R +GY
Sbjct: 200 ENVWG-YEYMGSSNIIEVYIRYLRRKLEANSEIRLVHTVRSVGY 242


>gi|160900855|ref|YP_001566437.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366439|gb|ABX38052.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 239

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNN 124
           +A + VPL+ +S        +   + G DD + KP   RE++AR  A+ R   RL+ +  
Sbjct: 77  QAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRVQRLQPAPT 136

Query: 125 RAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +      +FS    G+   +QG    L RRE ++L  L+   G+ +++  +  +I+G  
Sbjct: 137 ASAAPADALFSIDPQGQRVRMQGVPLELTRREYQLLRCLLERPGRILSREFLLDSIWG-Q 195

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           D    +  V++H+  LR KLR +    D + + R +GYS+
Sbjct: 196 DSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 235


>gi|52144660|ref|YP_082168.1| response regulator [Bacillus cereus E33L]
 gi|51978129|gb|AAU19679.1| response regulator [Bacillus cereus E33L]
          Length = 225

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDETRHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220


>gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 242

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAE 127
            VP++ ++        +     G DD V KP    E++AR+ AI RR    L  S++   
Sbjct: 81  HVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTSAGLDDSSSVLR 140

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              + +  D  +    G    L   E ++L YL+ N G+ ++K QI   ++  +D   + 
Sbjct: 141 YADLELDEDSHEVTRAGHAVELSPTEFKLLRYLILNPGRVLSKAQILDHVWQ-YDWGGDA 199

Query: 188 NVVESHISKLRKKLRNKLGFDP------VDSKRFLGY 218
           N+VES+IS LR+K+      D       + +KR +GY
Sbjct: 200 NIVESYISYLRRKIDQLADADGNRLPPLIHTKRGVGY 236


>gi|330882054|gb|EGH16203.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 149

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 12/135 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146
            D+G DD + KP    E+ ARV A+ RR   S  RA    E   I +    +    QG  
Sbjct: 20  LDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQPLLEHAGISLDPASQQVSFQGSE 76

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            P+   E ++L  LM   GK V + ++ + +YG  D+ VE N +E  I  LRKKL  +L 
Sbjct: 77  VPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYGWQDK-VESNTLEVLIHNLRKKLSTEL- 134

Query: 207 FDPVDSKRFLGYSID 221
              + + R +GY ++
Sbjct: 135 ---IRTVRGVGYLLE 146


>gi|323694714|ref|ZP_08108874.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           symbiosum WAL-14673]
 gi|323501229|gb|EGB17131.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           symbiosum WAL-14673]
          Length = 232

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 16/152 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R IR+ S+ P+I +S        +D  D+G DD + KP    E+LAR+   +RRL 
Sbjct: 63  IDIIRKIRSWSKTPIIVLSARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTFRRLN 122

Query: 121 VSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + + A   P  VF++G            + G+   L   E ++L  L  N GK +  T 
Sbjct: 123 DAGDSA-AAPASVFTNGEMRLDYAAGTVTMSGQELHLTPIEYKLLCLLAKNVGKVLTHTY 181

Query: 173 IFSAIYGLFDEAVEENVVES---HISKLRKKL 201
           I   I+G    +  +N V S    ++ LRKK+
Sbjct: 182 ITKKIWG----SAWDNDVASLRVFMATLRKKI 209


>gi|260430664|ref|ZP_05784636.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418105|gb|EEX11363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 228

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 9/202 (4%)

Query: 27  EGFNSLEFEE----WLQ-SSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISD 80
           EGF  ++ E      LQ   A  D+  ++  L G  G ++    ++  A   +P+I +S 
Sbjct: 27  EGFTVVQAENGDEALLQIKEAPPDLILLDWMLPGVSGIEICRQLKMTAATRAIPVIMLSA 86

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGR 138
                  +   ++G DD V KP    E++ARV + +RR + +    R E   I + ++  
Sbjct: 87  RSDEVDKVRGLETGADDYVTKPYSVIELMARVKSQFRRTRPAAVGERLEYDDIVLDAETH 146

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
                G+   L   E R+L   M   G+   + Q+   ++G  D  V+   V+ HI +LR
Sbjct: 147 RVTRAGQDIKLGPTEFRLLSTFMEKPGRVWNREQLLDRVWG-RDIYVDTRTVDVHIGRLR 205

Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220
           K L  + G DP+ + R  GY++
Sbjct: 206 KALTVRGGDDPIRTVRGAGYAL 227


>gi|229030926|ref|ZP_04186945.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228730420|gb|EEL81381.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 225

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ N   
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLNADM 128

Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTADFQITTVRGLGYKLE 223


>gi|160894183|ref|ZP_02074961.1| hypothetical protein CLOL250_01737 [Clostridium sp. L2-50]
 gi|156864216|gb|EDO57647.1| hypothetical protein CLOL250_01737 [Clostridium sp. L2-50]
          Length = 220

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 5/154 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I ++   S    +     G DD + KP +   +L R+AA+ +R++ S N A
Sbjct: 67  IRKESDIPVIMVTSRTSEMDEVLSMSYGADDYITKPYNPTILLLRIAAVLKRMEGSQNAA 126

Query: 127 ETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                 V FS G     + E   L + E  I + L++++ K V++ +I + ++   +E V
Sbjct: 127 SYRGAEVNFSKGTIRLGEKEQV-LTKNEMIIFQRLLSSKDKIVSRDEIMTDLWD-NEEYV 184

Query: 186 EENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            +N +  +IS+LR KL  +LG  D +++++  GY
Sbjct: 185 NDNALTVNISRLRTKLA-ELGLPDAIETRKKQGY 217


>gi|148273675|ref|YP_001223236.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831605|emb|CAN02573.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 8/163 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLK 120
           E+ R IR  S VP+I ++   S    +   + G DD V KP   RE+LAR+ A+  RR++
Sbjct: 62  EVCREIRTRSAVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRRVE 121

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V +   N  E G +R+  +    EV G    +P +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 VDDEPLNVLEVGSVRMDVERHTVEVDGREIAMPLKEFELLELLLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218
           +G  D   +   ++ HI ++R K+  +   DPV   + R LGY
Sbjct: 182 WG-SDYFGDTKTLDVHIKRIRSKIEREPS-DPVLLVTVRGLGY 222


>gi|15596834|ref|NP_250328.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAO1]
 gi|107101068|ref|ZP_01364986.1| hypothetical protein PaerPA_01002099 [Pseudomonas aeruginosa PACS2]
 gi|218892408|ref|YP_002441275.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           LESB58]
 gi|254234736|ref|ZP_04928059.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           C3719]
 gi|254239983|ref|ZP_04933305.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192]
 gi|9947605|gb|AAG05026.1|AE004591_6 two-component response regulator KdpE [Pseudomonas aeruginosa PAO1]
 gi|126166667|gb|EAZ52178.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           C3719]
 gi|126193361|gb|EAZ57424.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192]
 gi|218772634|emb|CAW28417.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           LESB58]
          Length = 230

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 25/225 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSA--REDVSAIEAFLIGK 56
            +LIDD   ++      F    ++ +G+  LE    EE L  +A  R D+  ++  L  +
Sbjct: 8   ILLIDDEPQIRK-----FLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDR 62

Query: 57  -GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G+ +L   R +R  SQVP++ +S   S    +   D G +D V KP   +E LARV  +
Sbjct: 63  DGQDIL---RDLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVL 119

Query: 116 YRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            R+     +       GP++V    R   ++G    L R+E  +L  L  + G+ V + Q
Sbjct: 120 LRQAAQGESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQ 179

Query: 173 IFSAIYGLFDEAVEENVVESH-ISKLRKKLRNKLGFDPVDSKRFL 216
           +   I+G        +V ++H +  +   LR KLG DP  S RFL
Sbjct: 180 LLKDIWG------PTHVEDTHYLRVVVGHLRQKLGDDPA-SPRFL 217


>gi|319893564|ref|YP_004150439.1| Response regulator SaeR [Staphylococcus pseudintermedius HKU10-03]
 gi|317163260|gb|ADV06803.1| Response regulator SaeR [Staphylococcus pseudintermedius HKU10-03]
          Length = 228

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 6/140 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----T 128
           +P + ++   S Q T+     G DD V KP   RE++ RV  +  R+ V++   +     
Sbjct: 73  IPYVYLTAKTSEQDTIFGLMLGADDYVKKPFSPRELVIRVKNLMNRVNVTSPSTQETIHC 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + + +  +  E++GEV P   +E  +L Y   +    ++KT +   ++G ++   + N
Sbjct: 133 GRLVLNNLNKTVELEGEVIPFRIKEFELLWYFANHESVALSKTDLLEQVWG-YEYYEDMN 191

Query: 189 VVESHISKLRKKLRNKLGFD 208
            +  H+ ++R+KL  K G+D
Sbjct: 192 TLNVHVHRIREKLE-KYGYD 210


>gi|312898268|ref|ZP_07757659.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620765|gb|EFQ04334.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 229

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+S+  E+   +   ++  G+   ++ R +R    +P++ IS        +     G DD
Sbjct: 38  LESALTENYDLLLVDVMLPGKDGFQIVREVRKKKDIPILMISAKREDIDKIRGLGLGADD 97

Query: 98  VVNKPIHHREILARV---AAIYRRLKVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPL 149
            ++KP    E++ARV   +A Y RL    +++     E G + +  +G    ++G+   L
Sbjct: 98  YISKPFSPSELVARVKAHSARYERLIAKADKSLASFIEVGSLEIQPEGHRVFIRGKEISL 157

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             +E  +L +L  NRG   +K  +F  ++GL D   +   V  H+++LR+KL
Sbjct: 158 THKEFELLLFLARNRGIVFSKDALFERVWGL-DAVGDTATVMVHVNRLREKL 208


>gi|331681384|ref|ZP_08382021.1| transcriptional regulatory protein CreB [Escherichia coli H299]
 gi|331081605|gb|EGI52766.1| transcriptional regulatory protein CreB [Escherichia coli H299]
          Length = 229

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|257469073|ref|ZP_05633167.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185]
 gi|317063319|ref|ZP_07927804.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313688995|gb|EFS25830.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 221

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 20/202 (9%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPS 83
           E +L   A +  +A+E F     + +L    LP++        IR  S +P+I ++   S
Sbjct: 25  ESFLTYKALDGETALEMFYEHNPDLILLDINLPKMNGWEVCQNIRKESNIPIIMMTARDS 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE-- 141
               L     G DD + KP   + +  ++    + LK+  N +       F D R  E  
Sbjct: 85  EIDELKGLSIGADDYITKPFSLKVLNIKIK---KMLKIDENSSYKFNNLSF-DFRSGELI 140

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           V  E   L RRE + LEYL+ N+G   ++  + + ++G FD   ++ VV++ + +LRKKL
Sbjct: 141 VNSESIELTRREIQFLEYLIKNKGIIFSRDVLLNEVWG-FDFEGDDRVVDTLVKRLRKKL 199

Query: 202 RNKLGFDPVDSKRFLGYSIDWN 223
            +    D + + R +GY  D N
Sbjct: 200 GDY--SDMIKTVRGMGYIFDEN 219


>gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
 gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
          Length = 232

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R+     P++ ++    +   +   D+G DD + KP    E+LARV ++ RR 
Sbjct: 60  LEVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRA 119

Query: 120 KVSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              +  AE  P+          + +D R+    G    L R E  +L+ LM N  K +++
Sbjct: 120 SADSIAAE-APVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++I   ++G +D     N +E +I  LRKK   +     + + R +GY
Sbjct: 179 SKILEEVWG-YDFPTSGNALEVYIGYLRKKTEGESDARLIHTVRGVGY 225


>gi|251790853|ref|YP_003005574.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247539474|gb|ACT08095.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 232

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 8/167 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +R +  +P+I ++        +   + G DD V KP + RE++AR+ A+ RR +
Sbjct: 66  IDVLRQVRRNRSIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 125

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               ++E       G + +    R  E +G+ F L   E  +LE L+ +  + V K ++ 
Sbjct: 126 DKAEKSEDAGTINYGELVISPSTRSSEWRGKAFDLTASEFNLLELLIRSSERVVTKDELS 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
               G   EA + + V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 186 EKCLGRRREAYDRS-VDVHISNIRQKLAALDGCSLTIETVRSVGYRI 231


>gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 224

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +RA   + P++ ++   +++  +   ++G DD + KP    E++ARV A+ RR 
Sbjct: 60  VEICRHLRAARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRR- 118

Query: 120 KVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                R   GP  +             +    G+V  L  +E  +LEYLM N G+ + ++
Sbjct: 119 ----ARGTDGPPTILQVADLTLDLLRHEARRGGQVIELTPKEFALLEYLMRNPGRALTRS 174

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           QI   ++  +D     NVV+ +I  LR K+    GFD   + + R +GY I+
Sbjct: 175 QIIDRVWQ-YDLDSLSNVVDIYIHYLRDKIDR--GFDRPLIKTVRGVGYKIE 223


>gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 235

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 13/158 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +  P++ ++   + +  +    +G DD V KP    E++AR+ A+ RR    +  A   P
Sbjct: 77  TDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRRTGAGDLPARP-P 135

Query: 131 IRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
              F+D    E   EV+       L   E ++L Y MAN G+ ++K QI   ++  +D  
Sbjct: 136 RLTFADIELDEESHEVWRRGRAVALSPTEFKLLRYFMANAGRVLSKAQILDHVWD-YDFR 194

Query: 185 VEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            +  +VES++S LR+K+ N    DP  + + R +GY +
Sbjct: 195 GDVGIVESYVSVLRRKIDNA---DPRLIHTLRGVGYVL 229


>gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 242

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 19/213 (8%)

Query: 23  GVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79
           G++ EGF ++   + EE L  S       I   ++      L++ R IR  S VP+I ++
Sbjct: 29  GLTREGFETIVANDGEEALALSRSHHPDLILLDVMLPRLSGLDVCRTIRQESSVPIIMVT 88

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNRAETGPIRV 133
                  T+   + G DD V KP    E++AR+ A  RR K       +    E+  I V
Sbjct: 89  ARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRRTKHQGQAQAAEEILESHGITV 148

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
           + D    +V+G    LP +E  +L   + N G+ + +  I   ++G  D   +   ++ H
Sbjct: 149 YVDRHQVDVRGTEVRLPPKEFDLLLLFLRNPGRVLTRDLILDRVWG-SDYYGDTKTLDVH 207

Query: 194 ISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
           +    K+LR+K+  DP     + + R +GY ++
Sbjct: 208 V----KRLRSKIEPDPNNPSIIATVRGVGYRLE 236


>gi|332799755|ref|YP_004461254.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697490|gb|AEE91947.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 228

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + +L DD +L+ DG   L    G  L+   ++     + +  + D+  ++  L  G G  
Sbjct: 4   ILLLEDDLSLI-DGLSRLLKRQGFELDIARTVREANTIWADGKYDLLILDVSLPDGSG-- 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E+ + +R  S+VP+I ++        +   D G DD + KP     +++R+ A+ RR+
Sbjct: 61  -FEVCQKVRQVSKVPIIFLTASDEEMNIVTGLDIGGDDYITKPFKLGVLISRINALLRRV 119

Query: 120 K---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           K    ++    +  I+V          G++  L   E R+L  LM N    ++K +I   
Sbjct: 120 KNFGTADTEIISNGIKVLLLQGQVYKDGQLLDLTTAEYRLLCLLMQNPNIILSKEKILDK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
           ++      V++N +  +I +LR K+ N  G DP  + + R +GY   WN
Sbjct: 180 LWDGEGSYVDDNTLAVYIRRLRMKIENNPG-DPQMLLTVRGMGYK--WN 225


>gi|297571220|ref|YP_003696994.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931567|gb|ADH92375.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 228

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 13/196 (6%)

Query: 36  EWLQSSAREDVSAI------EAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86
           EW+ + + E+  A+      E  L+     G   ++L   +RA S  P++ +S     + 
Sbjct: 27  EWIGAGSAEEARAVLQERSVELILLDVMLPGASGIDLCEAVRASSSTPVVLLSALGDEED 86

Query: 87  TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV 146
            +   ++G DD + KP   RE+  R+ AI RR     + +E   IR+ SD  +   +G  
Sbjct: 87  RIRGLEAGADDYITKPFSPREVGLRIEAILRR-HGDTSWSEAEGIRIDSDTGELSFEGST 145

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             LP  E R+LE L+ +  + V+   +   ++   +      +V   + +LR  L+  +G
Sbjct: 146 TLLPAMESRVLEQLLHHYNRTVSFHDLLHNVWNTDESVGGREMVRITVHRLRAHLK-AIG 204

Query: 207 F--DPVDSKRFLGYSI 220
              + +++ R  GY +
Sbjct: 205 VRENLIETVRGTGYRV 220


>gi|255531093|ref|YP_003091465.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255344077|gb|ACU03403.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 225

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 4/135 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV--QGEVFP 148
            ++G DD + KP    E+LAR+ AI RR K    R E        D ++ +V  +G+   
Sbjct: 92  LEAGADDYLAKPFSLTELLARMHAIIRR-KHKLERNEVNVHDFILDIKNHQVSFEGKRVN 150

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGF 207
           L  +E  I  YL+ N+ + +++  +   ++G + +   + N V+ H+  LRKKL      
Sbjct: 151 LTNKEFEIFNYLVLNKNRVISRVNLTEHVWGDILEVNSDSNFVDVHVKNLRKKLTAYATI 210

Query: 208 DPVDSKRFLGYSIDW 222
           +  ++ R +GY I++
Sbjct: 211 NWFETVRSIGYRINF 225


>gi|170694195|ref|ZP_02885350.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170140935|gb|EDT09108.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 220

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 22/158 (13%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   ++   +    +G DD + KP    E++AR  A+ RR   ++ R+ T  I+
Sbjct: 73  TPVLVMTARDTVADRVGGLTAGADDYLGKPFDLSELIARCRALLRR---AHGRS-TETIQ 128

Query: 133 VFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                RD  V+   F         PL  RE  +L  L+ ++G  +++ +I   +YG + E
Sbjct: 129 Y----RDLIVEPSTFTVTQGGLRQPLTSRECAVLIELLTHQGTPLSRARIEENLYG-WQE 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE N VE HIS LRK    KLG   + + R +GY ++
Sbjct: 184 EVESNTVEVHISNLRK----KLGPGIIKTIRGVGYVVE 217


>gi|148656746|ref|YP_001276951.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148568856|gb|ABQ91001.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 231

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 23/158 (14%)

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L++ R +RA   H  + ++   D P  +      D+G DD + KP H  E+LAR+ A+ R
Sbjct: 60  LDVCRYLRANYPHLLILILTARDQPEERVI--GLDTGADDYLIKPFHFGELLARIRALLR 117

Query: 118 R-LKVSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAK 170
           R L+V        P+  + D + DP  Q      +   L R+E  IL YLM ++G+ + +
Sbjct: 118 RDLRVRQ------PLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQ 171

Query: 171 TQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLG 206
             +   ++   D  V    N V  HI+ LR+KLR+ + 
Sbjct: 172 EMLLEHVW---DGTVNPFTNTVRVHINALRRKLRDTIA 206


>gi|12744844|gb|AAK06808.1|AF324838_27 putative regulator SimReg1 [Streptomyces antibioticus]
          Length = 251

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 19/157 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IRA S VP+I +S        +     G DD +  P   R+++AR+ A+ RR  
Sbjct: 72  FEVCRAIRAVSHVPIIVVSARDDELDQILSLKLGADDYIVWPCGMRQLVARMEALIRR-- 129

Query: 121 VSNNRAET---------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
            + N  E+               GP+R+    R     G   PL R+E  +L  L  + G
Sbjct: 130 -ARNAWESWGVPLASPEPGVRQFGPVRIDLQRRSVTRDGHEVPLTRKEFDMLALLATDPG 188

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +   + QI   ++G  D A +   +  H++ +RKKLR
Sbjct: 189 RVFTREQIMFEVWG-HDGAGDTRTLGVHVTGIRKKLR 224


>gi|83719535|ref|YP_440832.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83653360|gb|ABC37423.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 272

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 27/136 (19%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPI-------RVFSDGRDPE 141
           +G DD + KP    E+ AR+  + RR + S    ET    GP+       +V+ DG    
Sbjct: 141 AGGDDYLTKPFDTEEMTARLEVLLRRSQASPAPFETTLAVGPLTLDLISRKVYRDG---- 196

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKK 200
              E+  LP  E R+LE++M + G+ + +  +F A++G  FD     N+++ H+ +LRKK
Sbjct: 197 --AEIALLPT-EYRVLEFMMRHAGQTITRMMLFEAVWGYHFDPGT--NLIDVHMGRLRKK 251

Query: 201 LRNKLGFDPVDSKRFL 216
           +      DP D+   +
Sbjct: 252 I------DPPDATPMI 261


>gi|33241229|ref|NP_876171.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238759|gb|AAQ00824.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 269

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 22/173 (12%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA S VP+I +S   ++   +   D G DD ++KP   +E+ AR+A I RR+    +
Sbjct: 89  RRLRAESIVPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPGAS 148

Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            AE             G + V ++ R     GE   L   E  +LE L  + GK V + +
Sbjct: 149 VAEPREIPAGQGVMKLGELVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGKVVPRAE 208

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219
           I   ++G     A +  VV+ ++++LR KL      DP     + + R +GYS
Sbjct: 209 ILEQLWGYPPRRAADLRVVDVYVARLRGKLEP----DPRNPELILTVRGIGYS 257


>gi|54309587|ref|YP_130607.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum SS9]
 gi|46914025|emb|CAG20805.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum SS9]
          Length = 229

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           ++P++ ++   + Q  +   ++G DD + KP    E++AR++A+ RR           G 
Sbjct: 77  RLPVLILTARANWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSAGFVKPEMSAGD 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           IRV    +   V   +  L   E  +LEYLM +  + V+K ++   +Y   D+  + N +
Sbjct: 137 IRVDLLAKQVFVGETLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE--DQEGDPNTI 194

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E  IS+LRKK  +    +P+ + R  GY
Sbjct: 195 EVMISRLRKKFMSAGQDNPISTIRGQGY 222


>gi|13475522|ref|NP_107086.1| two-component system, regulatory protein [Mesorhizobium loti
           MAFF303099]
 gi|14026274|dbj|BAB52872.1| two-component system, regulatory protein [Mesorhizobium loti
           MAFF303099]
          Length = 221

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 12/137 (8%)

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQ 143
           +D  ++G DD + KP    E+LAR+ AI RR   S  +A    ++GP+ + +      ++
Sbjct: 88  VDGINAGADDYLPKPFEMEELLARLRAILRR---STGQAAPVLKSGPLVLDTRQMRISLR 144

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           G    L   E R+L +LM + G+ VA T++   +Y   ++  + N VE  +++LR+    
Sbjct: 145 GIPVALSPLEYRLLAFLMHHAGRVVAPTELAEHLYDSGNDR-DPNAVEVIVARLRR---- 199

Query: 204 KLGFDPVDSKRFLGYSI 220
           KLG D ++++R  GY +
Sbjct: 200 KLGSDVIETRRGFGYFV 216


>gi|115360612|ref|YP_777749.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115285940|gb|ABI91415.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 261

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 17/191 (8%)

Query: 22  DGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGIS 79
           +G  ++ F+S L+ +++L S    D++ ++  L G  G+K+L+  R  R+ S +P+I  +
Sbjct: 31  EGYHIDAFHSGLDAQQFL-SEQWADLAILDWDLPGVSGDKLLQKIRS-RSQSIMPVIFQT 88

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD--- 136
            + +    +   D+G DD + KP   + +LAR+ A+ RR    N +      ++F D   
Sbjct: 89  VHSAESDIVRILDAGADDYLVKPYDRQVLLARMRALLRRFAPMNVQGR----KMFVDDEC 144

Query: 137 -----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
                 R   V G    L  +E  IL +L  + G  V +  + S ++G +D AV+   V+
Sbjct: 145 ALDQQARSLVVAGVAHKLGTKEFDILWHLARHTGAVVLRQDLMSVVWG-WDAAVQSRSVD 203

Query: 192 SHISKLRKKLR 202
            ++S+LR  L+
Sbjct: 204 MYVSRLRASLK 214


>gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 221

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 78/159 (49%), Gaps = 3/159 (1%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + IR     +P++ ++   ++Q T++    G +D + KP    E+L R+  I+ R 
Sbjct: 61  IDVCKAIRQEDINIPILFLTARDTVQDTIEGLQCGANDYIKKPFSFEELLERI-KIHFRN 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       G I + S   + +++     L  RE  +LE+L+ N+G    + +I   ++G
Sbjct: 120 SIEQGILTLGNISLNSQTYEVQIEASDIALTHREFELLEFLIKNKGNVCKRDEIIEKVWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  E  +  V++  I+ +RKKL        + + R +GY
Sbjct: 180 INFE-YDTGVIDVFINAIRKKLNLDKDNGYIKTVRGVGY 217


>gi|293374408|ref|ZP_06620733.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325837122|ref|ZP_08166293.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
 gi|292646968|gb|EFF64953.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325491072|gb|EGC93366.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
          Length = 226

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 15/174 (8%)

Query: 38  LQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           L  S + D++ ++  + GK G  VL   + IR+ S+VP++ ++   S++  +  +D  VD
Sbjct: 42  LFHSQQIDLALLDLMMPGKDGFSVL---KEIRSVSKVPIMILTARSSVEDQVKGYDLKVD 98

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPL 149
           D + KP  ++ +LA+   I R L  +N   E     +  DG       R   +  E+   
Sbjct: 99  DYITKPFENKILLAK---INRLLARTNEEDEVTTYELAFDGLVVNKLSRTVRIDNELIDF 155

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +E  +L +L+ N    + + +I  A++G+ D   +  VV++HI K+RKKL N
Sbjct: 156 RPKEFDLLVFLIENHRIALDRDRILDAVWGI-DYFGDTRVVDTHIKKIRKKLGN 208


>gi|172034929|ref|YP_001801430.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171696383|gb|ACB49364.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 228

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 20/219 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + LV + YI  +  DGV  E ++ L+  +W   S      AI  +L+ K    LEL + +
Sbjct: 18  QVLVSEKYIVDWVVDGV--EAWHYLD-NQWTDYSV-----AIIDWLLPKLSG-LELCQRL 68

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R+H   +P++ ++     +  +   D+G DD + KP    E+LAR+ A+ RR      + 
Sbjct: 69  RSHQNPLPVLMLTALGQPENRITGLDAGADDYLVKPFIMEELLARLRALQRR--SPQFQP 126

Query: 127 ETGPIRVFS--DGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +T  I  FS  D  +          +  PL  +E +I  YLM +  + ++ ++I + ++ 
Sbjct: 127 QTLSIGQFSLDDANNALCVNVTQPPQTIPLTVKEFQIFAYLMKHPDRIISGSKIRNQLWD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           L  E +  NVV + +  +R+KL +     P+++ R  GY
Sbjct: 187 LDAEPM-SNVVAAQMRLIRRKLASYNCICPIETIRGQGY 224


>gi|90412642|ref|ZP_01220644.1| putative transcriptional regulator [Photobacterium profundum 3TCK]
 gi|90326450|gb|EAS42862.1| putative transcriptional regulator [Photobacterium profundum 3TCK]
          Length = 219

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 8/152 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAET 128
            VP+I ++   S+   +   DSG  D + KP    E+LAR+    R  K   ++ N    
Sbjct: 71  HVPVILLTAMVSVTDKVIGLDSGAKDYLTKPFAEEELLARIRLHLRNGKDDHLAANIITV 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G I +  + R+    G+   L R E  +L +L  N G+   + ++   ++G ++      
Sbjct: 131 GQISINMESREVNHGGDTVTLTRTEFELLVFLAKNAGRVFTRDELLDQVWG-YNHYPTTR 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V++HI +LR+KL   +G + +++ R +GY +
Sbjct: 190 TVDTHILQLRQKL---IGIE-IETLRGVGYRM 217


>gi|49081878|gb|AAT50339.1| PA0756 [synthetic construct]
          Length = 224

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 4/157 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+      +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  + 
Sbjct: 63  LARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLG 122

Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             + +     V+  G R   +  +   L  RE+ +LE ++A  G+ ++K Q+ + ++GL 
Sbjct: 123 GEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVFGL- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           DE    + +E ++ +LRKKL    G   + + R LGY
Sbjct: 182 DEEASADAIEIYVHRLRKKLEG--GAVRIVTFRGLGY 216


>gi|323463385|gb|ADX75538.1| two-component response regulator SaeR [Staphylococcus
           pseudintermedius ED99]
          Length = 228

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 6/140 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----T 128
           +P + ++   S Q T+     G DD V KP   RE++ RV  +  R+ V++   +     
Sbjct: 73  IPYVYLTAKTSEQDTIFGLMLGADDYVKKPFSPRELVIRVKNLMNRVNVTSPSTQETIHC 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + + +  +  E++GEV P   +E  +L Y   +    ++KT +   ++G ++   + N
Sbjct: 133 GRLVLNNLNKTVELEGEVIPFRIKEFELLWYFANHESVALSKTDLLEQVWG-YEYYEDMN 191

Query: 189 VVESHISKLRKKLRNKLGFD 208
            +  H+ ++R+KL  K G+D
Sbjct: 192 TLNVHVHRIREKLE-KYGYD 210


>gi|253573896|ref|ZP_04851238.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846373|gb|EES74379.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 239

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 31/226 (13%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  +   DG+       L F E      + D+  ++  L GK    +++ R +RA
Sbjct: 22  LEKEGYEVVLAFDGIEA---TQLAFSE------QPDLILLDLMLPGKDG--MDVCREVRA 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--------V 121
             + P+I ++        +   + G DD V KP   RE+LARV A  RR +         
Sbjct: 71  KLETPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQKAAAAAEGA 130

Query: 122 SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +       +F D     V   GE   L  RE  ++ YL+ N GK + +  +  A++G
Sbjct: 131 EETKQGISLFELFIDTDMYTVYKNGEPLDLTHREFELMHYLVKNSGKVMTREHLLQAVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
            F+   +   V+  I +LR+K+      DP     + ++R LGY +
Sbjct: 191 -FEYFGDVRTVDVTIRRLREKIEK----DPSKPEYILTRRGLGYMM 231


>gi|229154353|ref|ZP_04282473.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228629177|gb|EEK85884.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 242

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 135

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N R +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 136 TNQRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDDHLKTVYGVGYRW 237


>gi|49081934|gb|AAT50367.1| PA1637 [synthetic construct]
          Length = 231

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 25/225 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSA--REDVSAIEAFLIGK 56
            +LIDD   ++      F    ++ +G+  LE    EE L  +A  R D+  ++  L  +
Sbjct: 8   ILLIDDEPQIRK-----FLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDR 62

Query: 57  -GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G+ +L   R +R  SQVP++ +S   S    +   D G +D V KP   +E LARV  +
Sbjct: 63  DGQDIL---RDLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVL 119

Query: 116 YRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            R+     +       GP++V    R   ++G    L R+E  +L  L  + G+ V + Q
Sbjct: 120 LRQAAQGESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQ 179

Query: 173 IFSAIYGLFDEAVEENVVESH-ISKLRKKLRNKLGFDPVDSKRFL 216
           +   I+G        +V ++H +  +   LR KLG DP  S RFL
Sbjct: 180 LLKDIWG------PTHVEDTHYLRVVVGHLRQKLGDDPA-SPRFL 217


>gi|318041765|ref|ZP_07973721.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. CB0101]
          Length = 247

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---------ETGPIRVFSDGR 138
           ++  D+G DDV+ +P   RE++AR  A+ RR++     A         E G +++F +  
Sbjct: 102 VELLDTGADDVLVRPFGLRELVARCRAMLRRVRRMEQSARLAQAGTVLEAGALQLFREQC 161

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G    L  RE R+LE  M   G+ +++ Q+   ++G  D       V+ H+  LR
Sbjct: 162 RVCVHGAEVNLTPREFRLLECFMLQPGRALSRDQLIEQVWG-ADYCGNNKSVDVHVLWLR 220

Query: 199 KKL 201
           +KL
Sbjct: 221 RKL 223


>gi|167629619|ref|YP_001680118.1| transcriptional regulator [Heliobacterium modesticaldum Ice1]
 gi|167592359|gb|ABZ84107.1| transcriptional regulator [Heliobacterium modesticaldum Ice1]
          Length = 223

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 78/152 (51%), Gaps = 3/152 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETG 129
           Q P++ ++   +++  +   D+G DD + KP    E++AR+ A+ RR K+       +  
Sbjct: 72  QCPILMLTAKDAVEDRVQGLDAGADDYLVKPFASAELMARLRALSRRGKIPLQEEIVQVA 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +  +       G+   L  RE  +L+ L+ N+G+ + +  I   ++GL D  V +N 
Sbjct: 132 DLLLNRNRHSVTRGGKEITLTSREFALLDLLVQNKGQVLPRELIMERVWGL-DADVTDNT 190

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++++I  LRKK+        + + R +GY+++
Sbjct: 191 LDAYIRLLRKKIEPPGAAKLIHNIRGVGYTLE 222


>gi|322385215|ref|ZP_08058862.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321270839|gb|EFX53752.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 218

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 7/160 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR  SQ+P++ ++      T L  F+  + D V KP     ++ R+  I RR  
Sbjct: 61  LDVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS +    G + V  D      Q E  PL ++E  IL+ L   +   V + Q+ + I+G 
Sbjct: 121 VS-SEITVGELTVSIDDCTVYWQEEKMPLTKKEYEILQALAKRKDHLVTRDQLMNTIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  ++  V+++HI  +RKK+       P+ +   +GY +
Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGI----PLKTITGMGYQL 213


>gi|300693468|ref|YP_003749441.1| DNA-binding response regulator in two-component regulatory system
           with bass (basr) [Ralstonia solanacearum PSI07]
 gi|299075505|emb|CBJ34798.1| Putative DNA-binding response regulator in two-component regulatory
           system with BasS (basR) [Ralstonia solanacearum PSI07]
          Length = 221

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 14/203 (6%)

Query: 28  GFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           G+N+      ++ ++W+ S+  + +        G+G   LE  R   A S VP+I  S  
Sbjct: 25  GYNTTWVRRLMDAQKWMGSNTFDAIVLDLGLPDGEGHVFLEELRA--AQSDVPVIIASAR 82

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140
            +L   L   D G DD + KP    E++AR+ A+ RR    S NR   G + V    +  
Sbjct: 83  DALSERLKGLDEGADDFLVKPFPVDELIARLRAVLRRHAGQSTNRWSVGSLVVEPSQKRV 142

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
              G V  L  RE ++L  L+    + V +  +  A+Y   +  V  N +E  I      
Sbjct: 143 TQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREGNR-VSANALEVVI----HH 197

Query: 201 LRNKLGFDPVDSKRFLGYSIDWN 223
           LR KLG   + + R +GY I  N
Sbjct: 198 LRGKLGEGVIQTIRGVGYMIGGN 220


>gi|260427208|ref|ZP_05781187.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
 gi|260421700|gb|EEX14951.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
          Length = 229

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R I+   +   VP+I +S        +   ++G DD V KP   RE++ARV A  R
Sbjct: 65  IEVCRQIKTRPETRGVPVIMLSARSEEVDRIRGLETGADDYVVKPYSLRELMARVRAQLR 124

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +   +  R E   I + ++       G+   L   E R+L   M   G+  ++ Q+  
Sbjct: 125 RARPAAAGLRLEYEDIVLDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 185 RVWG-RDIYVDTRTVDVHIGRLRKALGVHGGGDPLRTVRGAGYAL 228


>gi|300361211|ref|ZP_07057388.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|300353830|gb|EFJ69701.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 246

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L  +  ED  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 42  LDLALNEDFDAILLDLMLPDLNGLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADD 101

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSD------GRDPEVQGEV 146
            + KP    E+LAR+ A+ RR+++   RA    + V     F+D       R        
Sbjct: 102 YIVKPFAIEELLARLRAVLRRVQIE-KRAMGDTMGVQKVVHFNDLTIETANRIVHRGDST 160

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L +RE  +L  L+ N+   V + Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 161 VDLTKREYNLLMTLIKNKNNVVTREQLLNKIWG-PESKIETNVVEVYVRYLRNKI 214


>gi|170783046|ref|YP_001711380.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157616|emb|CAQ02814.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 8/163 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLK 120
           E+ R IR  S VP+I ++   S    +   + G DD V KP   RE+LAR+ A+  RR++
Sbjct: 62  EVCREIRTRSAVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRRVE 121

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V +   N  E G +R+  +    EV G    +P +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 VDDEPLNVLEVGSVRMDVERHTVEVDGREIAMPLKEFELLELLLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218
           +G  D   +   ++ HI ++R K+  +   DPV   + R LGY
Sbjct: 182 WG-SDYFGDTKTLDVHIKRIRSKIEREPS-DPVLLVTVRGLGY 222


>gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
 gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
          Length = 235

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ +++R  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR  
Sbjct: 68  IEVCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAILRRSG 127

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +K SN   E   ++V  D R   V G+   L  +E  +LE LMA+  K  ++ ++
Sbjct: 128 KKQAPVKQSN-VMEVNGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNEL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218
            S I+G      +   V+ H+ +LR+K+    G +PV   +K  +GY
Sbjct: 187 LSTIWG-DSYPGDARTVDVHVRRLREKIEANPG-EPVYIHTKWGVGY 231


>gi|149926314|ref|ZP_01914576.1| probable two-component response regulator transcription regulator
           protein [Limnobacter sp. MED105]
 gi|149825132|gb|EDM84344.1| probable two-component response regulator transcription regulator
           protein [Limnobacter sp. MED105]
          Length = 241

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 114/237 (48%), Gaps = 40/237 (16%)

Query: 13  DGYIALFGDDGVSLEGF---------NSLEFEEWLQSSAREDVSAIEAFLI-----GKGE 58
           D  ++ F + G+  EG+           L   + LQ   RE+  +    L      G G 
Sbjct: 9   DARVSSFLERGLKAEGYRPQVAHNANTGLSMAKALQKEVRENFESAVVILDVMLPDGSG- 67

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             L++ + +RA    +P++ ++   S++  +     G DD + KP    EILAR+ A+ R
Sbjct: 68  --LDVCQTLRAEGFALPVLMLTALNSVEDRVAGLRMGADDYLGKPFAFDEILARLEALGR 125

Query: 118 R------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           R            L+V++   +   +R+   GR  E+Q     L  +E  ++E LM+  G
Sbjct: 126 RVGNAAPKQARKNLEVADLNLDLEKMRLSRAGR--EIQ-----LTAKELALVELLMSAPG 178

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +  ++ +I S ++G+ ++ +  NVV+ +I +LR K+ +  G  P + ++R LGY ++
Sbjct: 179 RLFSRERILSNVWGVNEDPL-TNVVDVYIRRLRTKI-DLEGLQPLIHTQRGLGYRLE 233


>gi|319947852|ref|ZP_08022040.1| response regulator receiver [Dietzia cinnamea P4]
 gi|319438497|gb|EFV93429.1| response regulator receiver [Dietzia cinnamea P4]
          Length = 322

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 13/153 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ R +R HS   ++ ++       TL     G DD + KP   RE++AR+ A+ RR  
Sbjct: 45  VEVCRQVRTHSDAYIVMLTARTEEVDTLIGLSVGSDDYMTKPFSPRELMARIQAMMRRPR 104

Query: 119 ----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                     +    +  E G + +   GR+  V G    L   E  IL  L  + G  +
Sbjct: 105 TGPAAGAPAEVPAGESLREFGDLTIDVQGREVTVAGNAIALTCTEFDILASLSRDPGVVL 164

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ Q+ SA++G  +   ++++V+ HI  LR+KL
Sbjct: 165 SRPQLISAVWGP-NWVGDDHLVDVHIGHLRRKL 196


>gi|288818989|ref|YP_003433337.1| two-component response regulator [Hydrogenobacter thermophilus
           TK-6]
 gi|288788389|dbj|BAI70136.1| two-component response regulator [Hydrogenobacter thermophilus
           TK-6]
 gi|308752574|gb|ADO46057.1| two component transcriptional regulator, winged helix family
           [Hydrogenobacter thermophilus TK-6]
          Length = 226

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 12/182 (6%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           D+  ++ FL GK    + +P  I     +P+I ++    +   +     G DD + KP  
Sbjct: 46  DICILDLFL-GKESGSMLIP--ILNERNIPVIVLTVVDDVSEKVRCLRMGADDYMVKPFS 102

Query: 105 HREILARVAAIYRRLK-VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
             E+L R+  + RR+K ++ NR    E   I  FS      + G    LP+++  IL  L
Sbjct: 103 PEELLTRIETVLRRVKGITKNRTIKYENLEIDPFS--MTVRINGHAIFLPKKQVMILIKL 160

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + N G   +   +FS  +  +++A   + + +H+  LRK LRN  GFD + S   +GY++
Sbjct: 161 LENIGGVTSYNTLFSYAWVSYEDA-SIDALRTHVHNLRKVLRN-YGFDII-SYPGVGYTL 217

Query: 221 DW 222
            +
Sbjct: 218 RY 219


>gi|258513128|ref|YP_003189384.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|258542677|ref|YP_003188110.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633755|dbj|BAH99730.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635031|dbj|BAI01005.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636814|dbj|BAI02783.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638086|dbj|BAI04053.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639867|dbj|BAI05829.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641140|dbj|BAI07100.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642923|dbj|BAI08878.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644195|dbj|BAI10148.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645978|dbj|BAI11926.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647250|dbj|BAI13196.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649031|dbj|BAI14972.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650303|dbj|BAI16242.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652018|dbj|BAI17952.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653294|dbj|BAI19226.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655075|dbj|BAI21002.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-12]
 gi|256656347|dbj|BAI22272.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-12]
          Length = 223

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 7/129 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPR 151
           G DD + KP    E++AR+AA+ RR      +A  + G I +  + R          L  
Sbjct: 94  GADDYIVKPYDLNELVARIAAVARRYVAPRRQACYQMGEIVIDRENRSVTRNEMELELTA 153

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           RE  I+E L    G+  ++ QI +A+Y L D+ V  N VE  IS+LRKK+ N +    + 
Sbjct: 154 REWAIMELLSRRPGRIYSRQQIDTALYAL-DQDVGSNTVEVFISRLRKKVGNTV----IK 208

Query: 212 SKRFLGYSI 220
           + R  GY +
Sbjct: 209 TVRGRGYCL 217


>gi|255523369|ref|ZP_05390339.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188303|ref|ZP_06856695.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255513023|gb|EET89293.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047429|gb|EFG86871.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 230

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 20/213 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSAREDVSAIEAFLIGKG 57
           + V+ DD+ +VK           +S EGF ++     EE L +     +  I   ++  G
Sbjct: 5   ILVVDDDKDIVK------LITKSLSYEGFETIPAYSGEEALCALEENHIDFIILDIMMPG 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              L++ R IR     P++ +S        +   + G DD + KP   +E+ +R+ A +R
Sbjct: 59  MDGLDVCRSIRKSYNTPILLLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFR 118

Query: 118 RL--------KVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           ++        ++S NR  T    + +D   +  +      L  +E +IL  LM N    +
Sbjct: 119 KVDRLFKEWNELSPNRETTDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLMHNPNTVL 178

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + QI+  ++G  DE  E N V  HI  +RKKL
Sbjct: 179 TREQIYEYVWG--DEYGELNTVTVHIKNIRKKL 209


>gi|212696046|ref|ZP_03304174.1| hypothetical protein ANHYDRO_00582 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676955|gb|EEB36562.1| hypothetical protein ANHYDRO_00582 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 222

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S +P+I I+        ++  + G DD ++KP   + +  ++ A+ RR      +N
Sbjct: 66  IREISNLPIIFITSASDDINLINAINYGADDFISKPFSMQVLNMKIKALLRRSYDFSGNN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  I +  D    +V  +   L + E  ILE LM N  K V++  I   ++   D 
Sbjct: 126 FNLSYKNISLIKDKMILKVNDKEINLSKNEFLILEILMENPQKIVSRELIMDKLWAT-DS 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +++N +  +I++LRKKL++  G D  + +K+ +GY I
Sbjct: 185 FIDDNTLTVNINRLRKKLKD-FGLDDFIQTKKGVGYFI 221


>gi|188996079|ref|YP_001930330.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931146|gb|ACD65776.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 224

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 7/156 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ +S   S++  +     G DD + KP    E+LAR+ A+ RR K  +  ++    
Sbjct: 72  KTPILVLSAKDSVEDKVKGLSLGADDYLTKPFSFPELLARIQALVRRSKDIDEISKLKYH 131

Query: 132 RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +  D    EV    +   L  +E  +L+YLM N  K V +  I + ++ + D  +E NV
Sbjct: 132 DLVMDLLKKEVYRGNKKIDLTAKEYELLKYLMENAEKIVTRNMILANVFDI-DFDIESNV 190

Query: 190 VESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
           V+  I +LR K+    GFD   + + R  GY +  N
Sbjct: 191 VDVQIHRLRDKIDK--GFDKRLIHTVRGFGYVLKAN 224


>gi|154688062|ref|YP_001423223.1| YxdJ [Bacillus amyloliquefaciens FZB42]
 gi|154353913|gb|ABS75992.1| YxdJ [Bacillus amyloliquefaciens FZB42]
          Length = 229

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 19/200 (9%)

Query: 39  QSSAREDVSAI-EAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISDYPSLQT 86
           Q+ A +D +A+ + FL  K + VL    LP        R IR HS  P+I IS       
Sbjct: 27  QTVAADDFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISARSGEMD 86

Query: 87  TLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDGRDP 140
            +   ++G DD + KP  +  +LA++ +  RR       K      E   +++F +  + 
Sbjct: 87  QVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFEL 146

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
             Q E   L ++E ++LE L+    K   + ++    +   D  V++N +  +I++LRKK
Sbjct: 147 RFQDEKSELSKKESKLLEVLLERGEKVTGRDRLMEKTWDT-DIFVDDNTLNVYITRLRKK 205

Query: 201 LRNKLGFDPVDSKRFLGYSI 220
           LR       ++S R  GY +
Sbjct: 206 LRELNAPVSIESVRGEGYQL 225


>gi|238853787|ref|ZP_04644153.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
 gi|282851358|ref|ZP_06260723.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311110344|ref|ZP_07711741.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22]
 gi|238833596|gb|EEQ25867.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
 gi|282557326|gb|EFB62923.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311065498|gb|EFQ45838.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22]
          Length = 242

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L  +  ED  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 38  LDLALNEDFDAILLDLMLPDLNGLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSD------GRDPEVQGEV 146
            + KP    E+LAR+ A+ RR+++   RA    + V     F+D       R        
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVQIE-KRAMGDTMGVQKVVHFNDLTIETANRIVHRGDST 156

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L +RE  +L  L+ N+   V + Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 157 VDLTKREYNLLMTLIENKNNVVTREQLLNKIWG-PESKIETNVVEVYVRYLRNKI 210


>gi|325479620|gb|EGC82712.1| subtilin biosynthesis regulatory protein SpaR [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 219

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR     P++ ++     +  ++    G DD + KP    E+LAR+ A  RR K   + +
Sbjct: 66  IRGKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGAAELLARIEAHLRREKRERHTS 125

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G IR      +  V  E   L + E +I E L   +G+  ++ QI+  ++G FD   
Sbjct: 126 LNLGEIRFDLSSNEVFVVEEKVHLTKSEYQISELLAKRKGQVFSRDQIYELVFG-FDGIG 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + + +  HI  +R K + K G +P+++   +GY   WN
Sbjct: 185 DASAISEHIKNIRAKFQ-KYGENPIETVWGIGYK--WN 219


>gi|229032474|ref|ZP_04188442.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228728843|gb|EEL79851.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 229

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   +      L   E  IL Y M N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTIDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|255595850|ref|XP_002536403.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
 gi|223519809|gb|EEF25981.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
          Length = 233

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+      VP+I ++   + +  +  FD G DD + KP    E+ AR+ A  RR+   
Sbjct: 72  IKRLRNGKQAVPVIVLTANDNSEDIVRAFDLGADDYLIKPFKLPELTARIRAQIRRVSAH 131

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +++   G + + +  R   V+GE   L  RE  +LE L    GK V K  +  ++   +
Sbjct: 132 FSSKVSIGELELDTKERLAFVKGEKLSLSPREFSLLETLSNKFGKLVTKDALIESLCN-W 190

Query: 182 DEAVEENVVESHISKLRKKL 201
           D  +  N +E ++ +LRKKL
Sbjct: 191 DHDIGPNAIEVYVHRLRKKL 210


>gi|222094405|ref|YP_002528464.1| response regulator [Bacillus cereus Q1]
 gi|221238462|gb|ACM11172.1| response regulator [Bacillus cereus Q1]
          Length = 225

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N R +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 119 TNQRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDDHLKTVYGVGYRW 220


>gi|171780277|ref|ZP_02921181.1| hypothetical protein STRINF_02065 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281625|gb|EDT47060.1| hypothetical protein STRINF_02065 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 230

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 8/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R      +I ++   S+   +   D G DD + KP    E+LARV A++RR   
Sbjct: 63  EITRRLRLEKDTSIIMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQDA 122

Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++ + + G        +R+    R      +   L +RE  +L  L++N  + + + ++ 
Sbjct: 123 NSKQDKEGQAKEGLLGLRLNPQNRSAVRGDDEISLTKREYDLLSVLLSNVNRVMTREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++++  +D  +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 ASVWR-YDTDIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYII 227


>gi|167758394|ref|ZP_02430521.1| hypothetical protein CLOSCI_00734 [Clostridium scindens ATCC 35704]
 gi|167664291|gb|EDS08421.1| hypothetical protein CLOSCI_00734 [Clostridium scindens ATCC 35704]
          Length = 227

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V+ DDR L ++  +  F   G S    +S +  E    +   D++ ++  L G+    
Sbjct: 4   IIVVEDDRYL-REELVTTFERKGYSAWSISSFDEAEKEILAYAPDLAVLDLNLPGRSG-- 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R ++A +  P++ ++   +L   L     G DD + KP H   + ARVA + +   
Sbjct: 61  FELCRRLKARAAFPILILTARDALADELHALGLGADDFLTKPCHPDRLTARVARLIKTYG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++  + G + +  D      +     L   E +IL+ LM    + V K ++F  ++G 
Sbjct: 121 RVHDSLQAGSLILDLDAGRAAFKDRHTDLTETEGKILKTLMEYYPQTVPKEELFERLWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             E V++N+++ ++++LRK + + +G  + + + R  GY ++
Sbjct: 180 GSEFVDDNILQVNMARLRKSM-DHIGLREAIRTVRAQGYRLE 220


>gi|154505591|ref|ZP_02042329.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149]
 gi|153794030|gb|EDN76450.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149]
          Length = 240

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 41/199 (20%)

Query: 43  REDVSAIEAFLIGKGEKVLE------------------------LPRI--------IRAH 70
           +E V AIE +L  +G +VL+                        +PR+        IR  
Sbjct: 20  KEIVEAIEIYLTQEGYQVLKAYDGMQALKMLETETVHLLILDVMMPRLDGIRATLKIRET 79

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-----KVSNNR 125
           + +P+I +S        +   + G DD + KP +  E++ARV +  RR       VS+ +
Sbjct: 80  NSIPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLRRYTQLGGNVSSTQ 139

Query: 126 A---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E G +R+  D ++  V GE+  L   E  IL  LM N+G+  +  QI+ +I+   D
Sbjct: 140 ETIYEVGGLRINDDLKEVTVDGEMVRLTPIEYNILLLLMKNQGRVFSINQIYESIWN-ED 198

Query: 183 EAVEENVVESHISKLRKKL 201
               +N V  HI  +R+K+
Sbjct: 199 AIGADNTVAVHIRHIREKI 217


>gi|114798039|ref|YP_760125.1| DNA-binding response regulator ChvI [Hyphomonas neptunium ATCC
           15444]
 gi|114738213|gb|ABI76338.1| DNA-binding response regulator ChvI [Hyphomonas neptunium ATCC
           15444]
          Length = 258

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL R +R  S++P+I ++        +  F+ G DD V KP  +R +  RV A+ RR +
Sbjct: 89  MELLRRLRQTSELPVIFLTSKDEEIDEVIGFNIGADDFVRKPCSNRLLAERVKAVLRRSR 148

Query: 121 VSNNRAETGPIRVFSDGR---DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++   E G ++    G+   DP        G+   L   E  IL+ L    G   ++ Q
Sbjct: 149 GASAVPEEGDVKAIVRGKLVLDPNRHACTWDGKQVRLTVTEFLILQALATRPGYVKSRDQ 208

Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           +  A Y   D+  V++  ++SHI +LRKK R     FD +++   +GY
Sbjct: 209 LMDAAYD--DQIYVDDRTIDSHIKRLRKKFREVTDEFDAIETLYGVGY 254


>gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 233

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 13/150 (8%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R   ++ P++ ++   +    +     G DD V KP    E+ AR+ A+ RR  
Sbjct: 68  EVIRLLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR-- 125

Query: 121 VSNNRAETGPIRV-FSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +   E  P R+ F+D        +    G+   L   E ++L YLM N  + ++K QI
Sbjct: 126 --STSGEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              ++  +D   ++N+VES+IS LR+K+ N
Sbjct: 184 LDHVWN-YDFRGDDNIVESYISYLRRKVDN 212


>gi|110800218|ref|YP_696604.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168204892|ref|ZP_02630897.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168208625|ref|ZP_02634250.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168214155|ref|ZP_02639780.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215550|ref|ZP_02641175.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182624373|ref|ZP_02952157.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674865|gb|ABG83852.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170663696|gb|EDT16379.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170713053|gb|EDT25235.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714338|gb|EDT26520.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177910376|gb|EDT72753.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182382004|gb|EDT79483.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 223

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 8/187 (4%)

Query: 27  EGFNSLEF---EEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           EGFN LE    EE L+  +   V  AI   ++ K +  L + R IR  S  P+I ++   
Sbjct: 25  EGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG-LAVCRNIREVSNTPIILLTAKS 83

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AETGPIRVFSDGRDP 140
             +  L  ++ G DD + KP   + +LA+  A+ RR    N++   +   + +     + 
Sbjct: 84  QEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTLNDKNILDFNGLTINKLSHEV 143

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           ++ GE   L  +E  +L YL +N G  +++ +I   ++G +D   +   V+++I +LR+K
Sbjct: 144 KLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG-YDYFGDIRTVDTNIKRLREK 202

Query: 201 LRNKLGF 207
           L +K  +
Sbjct: 203 LLDKANY 209


>gi|42519507|ref|NP_965437.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|41583795|gb|AAS09403.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|329667746|gb|AEB93694.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii DPC 6026]
          Length = 242

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L  +  ED  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 38  LDLALNEDFDAILLDLMLPDLNGLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSD------GRDPEVQGEV 146
            + KP    E+LAR+ A+ RR+++   RA    + V     F+D       R        
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVQIE-KRAMGDTMGVQKVVHFNDLTIETANRIVHRGDST 156

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L +RE  +L  L+ N+   V + Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 157 VDLTKREYNLLMTLIENKNNVVTREQLLNKIWG-PESKIETNVVEVYVRYLRNKI 210


>gi|21221787|ref|NP_627566.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787037|ref|ZP_05525468.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289770930|ref|ZP_06530308.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|81859427|sp|Q9ZEP4|CSEB_STRCO RecName: Full=Transcriptional regulatory protein CseB
 gi|3980223|emb|CAA10325.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|4585590|emb|CAB40858.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289701129|gb|EFD68558.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 234

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 32/227 (14%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL +DG+      DG+S LE F +           R D++ ++  L   G   + L R I
Sbjct: 23  ALERDGFAVTAMPDGLSGLESFRA----------DRPDIALLDVML--PGLDGVSLCRRI 70

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---- 123
           R  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +     
Sbjct: 71  RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHAGGGDR 130

Query: 124 ----NRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 AETG +  F      +DG +    G    L   E R+L    +  G  +++ ++
Sbjct: 131 TEGAGAAETGGVLTFGDLEVDTDGMEVRRAGRPVGLTPTEMRLLLEFSSAPGTVLSRDKL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++  +    +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 191 LERVWD-YGWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 232


>gi|47567988|ref|ZP_00238694.1| two-component response regulator [Bacillus cereus G9241]
 gi|47555291|gb|EAL13636.1| two-component response regulator [Bacillus cereus G9241]
          Length = 229

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   +      L   E  IL Y M N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTIDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|330877751|gb|EGH11900.1| winged helix family two component transcriptional regulator
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330965158|gb|EGH65418.1| winged helix family two component transcriptional regulator
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 221

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 14/184 (7%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           D+  ++  L GK G+ VL     IR  S  VPL+ I+   SL   L   D G DD + KP
Sbjct: 46  DLVLLDLGLPGKDGQAVLS---NIRGQSNAVPLLIITARDSLDDRLRGLDGGADDYLLKP 102

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEY 159
               E+LAR+ A+ RR K  + +   G   V  D    E    Q     L  RE  +L+ 
Sbjct: 103 FDMAELLARMRAVLRR-KGGSGKPLLGNGVVTLDPSSKEACTDQNPAVQLSGREFALLQA 161

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L+   G  +++  +   IYG  +E VE N VE  I  LR+    KLG   + + R +G+ 
Sbjct: 162 LLIRPGAILSRADLEDRIYGWGNE-VESNAVEFLIHALRR----KLGSHVIKNVRGVGWM 216

Query: 220 IDWN 223
           +  N
Sbjct: 217 VSKN 220


>gi|258645697|ref|ZP_05733166.1| transcriptional regulatory protein CutR [Dialister invisus DSM
           15470]
 gi|260403067|gb|EEW96614.1| transcriptional regulatory protein CutR [Dialister invisus DSM
           15470]
          Length = 224

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 86/164 (52%), Gaps = 7/164 (4%)

Query: 42  AREDVSAIEAF--LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           ARE+  +   F  ++ K + +  L RI  +    P+I ++    ++  +   D+G DD +
Sbjct: 40  ARENSYSCMIFDIMMPKIDGIEALKRIRDSGDMTPVIMLTAKSEVEDRIMGLDAGADDYL 99

Query: 100 NKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
            KP    E+LAR+ ++ RR+ + +  + + G + +    ++      V  L  +E ++L 
Sbjct: 100 AKPFAMGELLARIRSMTRRMGEFTPTKLKKGDVELDVAEQELSCTSSV-RLSSKETKLLS 158

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           YLM N GK ++  ++F  ++   DEA ++  +V  +IS LR+K+
Sbjct: 159 YLMMNEGKTISTDELFRYVWS--DEADMDIGIVWMYISYLREKI 200


>gi|317050161|ref|YP_004117809.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316951778|gb|ADU71253.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 5/205 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ DG        G S++ F S +      +SA  D   ++  L  +    L
Sbjct: 3   ILLIEDDRIIGDGLKVGLTKLGFSVDWFVSGDAGFQALASAPWDAVILDLSLPERDG--L 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R   Q VP++ ++   +L   +     G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILRQWRQQGQDVPVLILTARDALDQRVQGLQLGADDYLCKPFALAEVAARLEALIRRRH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +        + GE   L  RE  +LE  + N G+ + ++Q+   +Y 
Sbjct: 121 GQLQPELRHGKVVMSPASHSVLLAGEPVTLKSRELALLELFLRNPGRVLTRSQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D+ V  N VE HI  LRKKL ++
Sbjct: 181 -WDDDVSSNAVEVHIHHLRKKLGSQ 204


>gi|268316384|ref|YP_003290103.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333918|gb|ACY47715.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 236

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 14/157 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRAET 128
            P++ ++     +  L  F+ G DD V KP    E+LARV A+ RR K        R   
Sbjct: 78  TPVLMLTGLNDREHRLKGFELGADDYVAKPFAPEELLARVEAVLRRAKRRPQPEKRRFRV 137

Query: 129 GPIRV-FSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           G I V   DG   RD    G+  PL   E R+L YL+ + G+ V + Q+   ++ L    
Sbjct: 138 GGIEVDLVDGTVTRD----GQPVPLTDMEFRLLRYLILHHGRTVTREQLLREVWEL-PPT 192

Query: 185 VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           V+   ++ HI+ LRK +  +     P+ S   +GY +
Sbjct: 193 VQTRTIDRHINALRKIMDGEDETSWPIQSVYGIGYRL 229


>gi|297588607|ref|ZP_06947250.1| DNA-binding response regulator [Finegoldia magna ATCC 53516]
 gi|297573980|gb|EFH92701.1| DNA-binding response regulator [Finegoldia magna ATCC 53516]
          Length = 218

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P I ++ +   +  ++ F S  D  + KP        R+ ++ ++  
Sbjct: 60  LEVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVFKVRIESLIKKYY 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N         V       ++ G+   +  +E  IL+Y++ N G+ + + QI  +++  
Sbjct: 120 GNNETFNYKNTEVNFTSYTAKINGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKE 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 180 TDEIPFDRVIDVYIKELRKKLE----LDCIVTIRNVGYKLE 216


>gi|38230268|gb|AAR14189.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR + +N   
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKAT 137

Query: 127 ETGPI----RVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               I     + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKIYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLVNVRGVGYRLD 238


>gi|331091527|ref|ZP_08340364.1| hypothetical protein HMPREF9477_01007 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403692|gb|EGG83246.1| hypothetical protein HMPREF9477_01007 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 225

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 4/153 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---T 128
           ++P+I ++     +  +  F+ G D+ + KP   RE+++RV  + R   + ++R +    
Sbjct: 71  KIPVIFLTALDEEKNIVKGFNLGADEYITKPFRPRELVSRVKNVIRLTGIEDSRKQELII 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +  + +     G+   L   E ++L     NRG+ + + QI S I+      V +N
Sbjct: 131 GNVSIHLEEKVAYKNGKQLELTALEYKVLLLFFENRGRILTRNQILSHIWDDSGNFVNDN 190

Query: 189 VVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  +I +LR+K+  N    D + + R +GY I
Sbjct: 191 TLTVYIKRLREKIEDNPYEPDIIKTVRGMGYKI 223


>gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
 gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
          Length = 235

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 13/138 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL-------KVSNNRAETGPIRVFSDGRDPEVQGEV 146
           G DD + KP   RE++AR+ A+ RR        + ++     G + V+ D  +  +  E 
Sbjct: 96  GADDYMTKPFSPREVVARIKAVLRRASNVPTPQQDASQPISLGKLDVYPDRFEVFLNKEQ 155

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN--- 203
                +E  +L YLM N+ + + + Q+ SA++  +D A +  +V+ HIS LR+K+     
Sbjct: 156 LEFTPKEFELLVYLMENKNRVLTRDQLLSAVWK-YDFAGDTRIVDVHISHLREKIEENSR 214

Query: 204 KLGFDPVDSKRFLGYSID 221
           K  F  + + R LGY  +
Sbjct: 215 KPAF--IKTIRGLGYKFE 230


>gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 229

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 17/216 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L  +GY  L   +G   EG N +        +A  D+  ++  +        E+ R +
Sbjct: 20  RGLAFEGYEVLTATNGA--EGLNKM-------LTAEPDLVVLDVMM--PQVDGFEVCRRM 68

Query: 68  R-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----S 122
           R   S VP++ ++    ++  +   D G DD + KP    E+LARV A+ RR       +
Sbjct: 69  REGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKTEQQDNN 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            NR     +++ ++ R+    G+   L  +E  +L   M N  + +++  I   I+G +D
Sbjct: 129 GNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIWG-YD 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + E NV+E +I+ LR+K     G   + + R  GY
Sbjct: 188 YSGESNVLEVYIAMLRQKTEQDGGKRLIRTIRGAGY 223


>gi|299139617|ref|ZP_07032791.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598545|gb|EFI54709.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 231

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 14/163 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI +++  +P++ ++        ++  D+G  D V KP   RE+ AR+ A+ RR  +   
Sbjct: 69  RICQSYPHLPVVMLTVRDEEDDIVEALDAGAFDYVTKPFQIRELTARLRAVIRRSHIPVA 128

Query: 125 RAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             E     G I + +D R  E +GE   L  +E   L YLM + G+ V   +I +A++G 
Sbjct: 129 NPEIIIVIGEITLDTDRRRVEKRGEDLHLTPKEYETLRYLMEHAGRPVRHERILTAVWG- 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
                E   +   I++LRKK+ +    DP     + ++ ++GY
Sbjct: 188 SAYGNEREYLRVIINQLRKKIED----DPARPLYILTESYIGY 226


>gi|257439801|ref|ZP_05615556.1| phosphate regulon response regulator PhoB [Faecalibacterium
           prausnitzii A2-165]
 gi|257197710|gb|EEU95994.1| phosphate regulon response regulator PhoB [Faecalibacterium
           prausnitzii A2-165]
          Length = 229

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 6/226 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
           M  +++D A +++         G  ++ F + E       +A  ++  ++  L G+ G  
Sbjct: 1   MIYIVEDDAAIRELEQYALQSSGYGVQSFETSEPFWQAMRAAEPELVILDVMLPGEDGFS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  R   A  ++P+I ++   S   T+   D G DD + KP    E L+RV A  RR 
Sbjct: 61  ILKKLRNTPALRRLPIIMVTAKSSELDTVRGLDCGADDYITKPFGIMEFLSRVRAALRRS 120

Query: 120 KVSNNRAETGPIRVFSDG--RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       +  D       V G    L  +E  +L  L+ N    V +  I   +
Sbjct: 121 APEEKQNVYAFHEILLDNARHSVTVNGTHIDLTYKEYSLLRLLLENTNLVVTRETILQVV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G  D +VE   V+ HI  LRKKL +   +  + + R +GY +  N
Sbjct: 181 WGT-DISVESRTVDMHIRTLRKKLGDAGRY--ICTVRKVGYKLADN 223


>gi|196041400|ref|ZP_03108693.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027648|gb|EDX66262.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 229

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 66/152 (43%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL Y M N G  + + Q+ S
Sbjct: 124 KQLLENEDDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNLGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
 gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
          Length = 256

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAETGPIRVFSDGRDPEVQGEVF 147
           F+ G DD V KP   RE++ RV AI RR      + +R + G + V   G    V G   
Sbjct: 96  FEVGADDYVTKPFSVRELMLRVRAILRRAGTKAEAPSRLQHGDLEVDVAGHRVWVGGNEI 155

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E R+L  L++  G+   +  + S ++G+    +    V++H+++LRKKL +   +
Sbjct: 156 RLTALEFRLLATLLSRAGRVQTRDTLLSDVWGMH-AGLTTRTVDTHVTRLRKKLGDAGSY 214

Query: 208 DPVDSKRFLGY 218
             +++ R +GY
Sbjct: 215 --IETLRGVGY 223


>gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
 gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
          Length = 240

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE+V    R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++
Sbjct: 64  GERVC---RTIRDTSDVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALF 120

Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR   ++  A    + G + +   G    V+G+   L   E ++L  L  + G+   + +
Sbjct: 121 RRAHQADEPAVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRME 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +   + G +D    E  ++SH+    K LR KLG DP   K
Sbjct: 181 LVEKVLG-YDFEGYERTIDSHV----KNLRAKLGDDPKKPK 216


>gi|186683302|ref|YP_001866498.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465754|gb|ACC81555.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 241

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGP 130
           +P++ ++   +L   +   D+G DD + KP    E++ARV A+ RR   + + ++   G 
Sbjct: 89  IPVLMLTARDTLGDKITGLDAGADDYMVKPFEMPELMARVRALLRRNSAATSSSDFGWGS 148

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENV 189
           +R+ S   +     +   L  +E  +LE LM + G+RV ++  I   I+ L D   EE  
Sbjct: 149 LRLNSSTYEVTYADQPLHLTPKEFALLE-LMVSSGRRVLSRAGIIERIWSLDDPPSEET- 206

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           V+SHI  LR KL++    D  +++   LGY +
Sbjct: 207 VKSHIKSLRYKLKDVGAADDFIETVHGLGYRL 238


>gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 242

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 15/172 (8%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L   R IRA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 68  LTAARRIRASGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 127

Query: 119 --LKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              + +    +TG +  F D       R+    G    L R E  +LE  +A+  + + +
Sbjct: 128 SYARATAGAPDTGDVLSFEDLRMDLATREVTRGGRTVELTRTEFTLLEMFLAHPRQVLTR 187

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            QI  A++G FD     N ++ ++  LR+K   + G +P  V + R +GY++
Sbjct: 188 EQILKAVWG-FDFEPSSNSLDVYVMYLRRK--TEAGGEPRLVHTVRGVGYAL 236


>gi|295115378|emb|CBL36225.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 14/164 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R+IR H   P++ ++        +     G DD + KP    E+ ARV A  RR  
Sbjct: 61  LELCRLIRDHVTCPILFLTARIEEADRVAGLRVGGDDYIMKPFSLAELTARVEAHLRR-- 118

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N   +   +R F D       R     G+V  L + E  I+E L  + G+  ++  I+
Sbjct: 119 -ENRIQQKISVRGFGDIVVDYTARTVSRNGQVIELSKVEFDIVELLSLHPGQVFSREAIY 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + G +D   +  VV+ HI    +++RNKLG   +++    GY
Sbjct: 178 EKVRG-YDGTADNAVVKEHI----RRIRNKLGAQNIETVWGCGY 216


>gi|290891363|ref|ZP_06554424.1| hypothetical protein AWRIB429_1814 [Oenococcus oeni AWRIB429]
 gi|290479009|gb|EFD87672.1| hypothetical protein AWRIB429_1814 [Oenococcus oeni AWRIB429]
          Length = 224

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 82/160 (51%), Gaps = 4/160 (2%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E  + +R  +  +P++ ++    ++T    F  G+DD + KPI   E+  R++A+ RR 
Sbjct: 61  VEFAKTVRQLNENIPILFVTARDDIKTKKAGFRVGIDDYLVKPIDLDELKLRISAVLRRA 120

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +S N + E G + + S+     + G   PL  RE  IL  +++  G+  ++ ++    +
Sbjct: 121 NISQNQKIEIGNLLLKSEEISASINGVPIPLTVREFNILFKMLSFAGRAFSRAELLDDFW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                A     V+ +I+KLR+K ++   F+ +++   LGY
Sbjct: 181 DTESNA-SLRAVDVYITKLREKFKSTNAFE-INTIHGLGY 218


>gi|289628709|ref|ZP_06461663.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
          Length = 146

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 12/135 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146
            D+G DD + KP    E+ ARV A+ RR   S  RA    E   I +    +    QG  
Sbjct: 17  LDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQPLLEHAGISLDPASQQVSFQGSE 73

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            P+   E ++L  LM   GK V + ++ + +YG + + VE N +E  I  LRKKL  +L 
Sbjct: 74  VPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQDKVESNTLEVLIHNLRKKLSTEL- 131

Query: 207 FDPVDSKRFLGYSID 221
              + + R +GY ++
Sbjct: 132 ---IRTVRGVGYLLE 143


>gi|269137752|ref|YP_003294452.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Edwardsiella tarda EIB202]
 gi|267983412|gb|ACY83241.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Edwardsiella tarda EIB202]
 gi|304557809|gb|ADM40473.1| Transcriptional regulatory protein basR/pmrA [Edwardsiella tarda
           FL6-60]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 6/132 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP    E+LARV A+ RR++ + NN  +   I +    +     G    +
Sbjct: 91  LDAGADDYLVKPFALAELLARVRALIRRMQGLCNNALQVDDIHLDLSSQQVSCGGLPLEI 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  IL  LM   G+ +++  +   +Y   DE +  N +E HI  LR+    KLG + 
Sbjct: 151 TPKEFAILTRLMMRAGQTISREVLQQDLYSWQDE-LSSNSLEVHIHNLRR----KLGKNR 205

Query: 210 VDSKRFLGYSID 221
           + + R +GY ++
Sbjct: 206 IKTLRGVGYRLE 217


>gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 235

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 10/117 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSDGR--------DPEVQG 144
           G DD + KP   RE+LAR+ AI+RRL+     R E  P  +   G            V G
Sbjct: 95  GADDYLTKPFSPREVLARMKAIFRRLEPRQQAREEDQPAEILQIGGIQADLTNFQVSVDG 154

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           E   L  +E  +L Y M  +G+ + +  + + I+  FD   +  +V+ HIS LR+KL
Sbjct: 155 EKIFLTPKEFELLVYFMKRKGRVIDRDTLLNRIWN-FDFDGQSRIVDVHISHLREKL 210


>gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 18/205 (8%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIR-AHSQVPLIGI 78
           SL FE +  S+A   +  +   L    + ++           E+ R +R   S VP++ +
Sbjct: 21  SLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVMMPQVDGWEVCRRVREGGSTVPILML 80

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-----KVSNNRAETGPIRV 133
           +    +   +   D+G DD + KP    E+LARV A+ RR      + S+N+     + +
Sbjct: 81  TAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRRKSDKIDESSSNKIVFDDLAL 140

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D R+    G    L  +E  +L   M N  + + +  I   I+G +D + E NV+E +
Sbjct: 141 DLDSREAIRSGRRIELTAKEYDLLLLFMQNPRRVLTRDAIMEKIWG-YDFSGESNVLEVY 199

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGY 218
           I+ LR+KL        + + R  GY
Sbjct: 200 IAMLRQKLEEGGAKRIIQTVRGTGY 224


>gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
 gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
          Length = 234

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 11/152 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          E   I +        V GE   +P +E  +L +L A+  +   + 
Sbjct: 125 IPKPEIPGEDKGKCVEYPGITINLTNYSVIVDGETVDMPPKELELLYFLAASPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           Q+   I+G ++   +   V+ HI +LR+K+++
Sbjct: 185 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKD 215


>gi|154506657|ref|ZP_02043114.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149]
 gi|153793325|gb|EDN75748.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149]
          Length = 228

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR HS VP+I +S   +          G DD + KP    E+LAR+ A  RR  
Sbjct: 60  MEVMQHIRTHSTVPIIIVSAKDTDADKTLGLGLGADDYITKPFSVTEVLARIKANIRRST 119

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   E      G + +       E  G    L  +E  IL+ L+ N  K   K Q++S
Sbjct: 120 QYSKPEEQEVLMMGDLTINLTNYTVEKNGTKIDLTAKEFEILKLLVQNPQKVYTKEQMYS 179

Query: 176 AIYGLFDEAV-EENVVESHISKLRKKL 201
            I+   D  + +EN V  HIS+LR K+
Sbjct: 180 LIWN--DAYLGDENAVNVHISRLRNKI 204


>gi|121535017|ref|ZP_01666835.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306430|gb|EAX47354.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 21/198 (10%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           KDG+I     DG   +  + +          + D+  ++  L   G    E+ R  R   
Sbjct: 25  KDGFITYIAHDG--YQALDKIR-------EQKPDIVVLDLML--PGIDGWEVCRRARKIG 73

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130
            +P++ ++        L   + G DD V KP   RE++ARV AI RR  K++   A+  P
Sbjct: 74  DIPILMLTARDEEADRLIGLEMGADDYVTKPFSAREVVARVRAILRRSHKIA---AQPEP 130

Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           I+V +   D E        E+  +   E +IL+ L  N+G+  ++ Q+   + G   E  
Sbjct: 131 IKVGNLLIDAERHVIIKDDEILDMTPTEFKILQLLATNKGRVFSRLQLIEQVQGYASEGY 190

Query: 186 EENVVESHISKLRKKLRN 203
           E   ++ HI  +R+K+ N
Sbjct: 191 ERT-IDVHIKNIRRKIEN 207


>gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84]
 gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84]
          Length = 234

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR +
Sbjct: 61  LEVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSE 120

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +   +             G + +  D    +  G+   L  RE  +L +L  + G+ + +
Sbjct: 121 LPETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY I  N
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233


>gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC
           35316]
          Length = 235

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR  ++ +P+I IS   S    +   ++G DD + KP   +E++AR+ A++RR 
Sbjct: 61  LEICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        G I       DP      + G+   L  RE  +L +   + G+  ++ ++ 
Sbjct: 121 QAMGQAQNDGHIHAHGLTLDPLARTVRLNGQEVDLTPREFELLYFFARHPGEVFSRLELL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G   E   E+ V +HI++LR K+
Sbjct: 181 EQVWGYQHEGY-EHTVNTHINRLRIKI 206


>gi|209974323|gb|ACJ04041.1| CsrR [Streptococcus pyogenes serotype M3]
          Length = 228

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + +P    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVRPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|167579523|ref|ZP_02372397.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 225

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 30/185 (16%)

Query: 45  DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           DV  ++  L G  G  +L   R I   +  P++ +S    +   +    +G DD + KP 
Sbjct: 47  DVITLDRMLPGVDGLTILTTMRSIGVRT--PVLMLSALGDVDERVRGLRAGGDDYLTKPF 104

Query: 104 HHREILARVAAIYRRLKVSNNRAET----GPI-------RVFSDGRDPEVQGEVFPLPRR 152
              E+ AR+  + RR + S    ET    GP+       +V+ DG       E+  LP  
Sbjct: 105 DPEEMTARLEVLLRRSQASPAPFETTLAVGPLTLDLISRKVYRDG------AEIALLPT- 157

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           E R+LE++M + G+ + +  +F A++G  FD     N+++ H+ +LRKK+      DP D
Sbjct: 158 EYRVLEFMMRHAGQTITRMMLFEAVWGYHFDPGT--NLIDVHMGRLRKKI------DPPD 209

Query: 212 SKRFL 216
           +   +
Sbjct: 210 ATPMI 214


>gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 236

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R   ++P+I ++   S    +   + G DD V KP   RE+LARV A  RR +
Sbjct: 63  MEVCREVRKQFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQ 122

Query: 121 VSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            S +          G + +  +    + +GE   L  RE  ++ YL  + G+ + +  + 
Sbjct: 123 TSGDDQLSYKEISVGDLSIHPEAYLVKKRGESIELTHREFELIHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            A++G +D   +   V+  + +LR+K+ +   +   + ++R +GY +
Sbjct: 183 QAVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPTWIITRRGVGYYL 228


>gi|154245024|ref|YP_001415982.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159109|gb|ABS66325.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 220

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D  ++ DG     G  G +++   +        ++ R D   ++  L  G G  V
Sbjct: 3   ILVVEDDPVLMDGLKVGLGLAGATVDEATTCADARAALAAGRFDAVVLDVMLPDGSGLDV 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L     +RA     P++ ++        +   D G DD + KP    E+ ARV AI RR 
Sbjct: 63  LA---GLRARGNATPVLLLTALDEAPDRVRGLDGGADDYLGKPFDLDELNARVRAIARR- 118

Query: 120 KVSNNRAETGP-IRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + RA  GP ++  +   DP      + G    L RRE  +L  LM   G   ++ +I
Sbjct: 119 --GHGRA--GPLLKAGALVLDPATLAATLDGLPIALSRREFAVLSALMERPGVIRSRMEI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +YG + E VE N VE HI  LR     K+G + +++ R LGY +
Sbjct: 175 EERLYG-WQEEVESNAVEVHIHNLRA----KVGRETIETVRGLGYRV 216


>gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 25/221 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+  L  D+G           EE ++     DV  I   L+  G   +E+ + IR 
Sbjct: 23  LEKNGFSVLTSDNG-----------EESIELVKNNDVDLIVLDLMLPGIDGIEVCKRIRR 71

Query: 70  ---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
              + + P+I ++        +   + G DD + KP   RE++AR+ A+ RR   S  + 
Sbjct: 72  MDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAVLRR---SEEKQ 128

Query: 127 ETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               I++        ++  +  ++ +   L  +E  ++  L  NRGK +++  +   ++G
Sbjct: 129 TVRAIKLVVKDLMIDTEKHEVRIKDQPIELTLKEFELVRILAENRGKVLSRNLLLDEVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI  LRKK+ +    + +++ R +GY +
Sbjct: 189 -YDYFGETRTVDVHIRHLRKKIGDDQSGEYIETIRGVGYKM 228


>gi|323187842|gb|EFZ73139.1| transcriptional regulatory protein baeR [Escherichia coli RN587/1]
          Length = 240

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 6/153 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K    +    AE+ P+ +         +G++  L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|302386530|ref|YP_003822352.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197158|gb|ADL04729.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 229

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 17/208 (8%)

Query: 24  VSLEGF----NSLEFEEWLQSSAREDVSAIEAF-LIGKGEKVLELPRIIRAHSQ---VPL 75
           ++LEGF    ++ E  E        D  A+  F L+  G   L   R IR +     +P+
Sbjct: 19  IALEGFGYEVSAFEMAEDALRHIESDQPALAVFDLMLPGMDGLTAIRRIRKNESLKDIPI 78

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135
           + ++        +   D G DD + KP    E+ AR+ ++ RR   + ++AE+  +  + 
Sbjct: 79  LILTAKDREFDKVAGLDGGADDYMTKPFGVMELAARIRSLLRR--STRDQAESNELNQYC 136

Query: 136 -----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
                  R+    G    L  +E  +L+YLM N  K V + ++ + I+G +D   E   +
Sbjct: 137 LNLNKKTREVHCDGMKVELTLKEFELLQYLMENHNKVVTRDELLNHIWG-YDYDGETRTL 195

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + HI  LR+KL    G   + + R +GY
Sbjct: 196 DMHIRTLRQKLGEN-GGSCIKTVRGVGY 222


>gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 97/205 (47%), Gaps = 9/205 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++   + + EE ++ +       I   L+      LE
Sbjct: 6   LVVDDEKLIVKGIRFNLEQDGMEVDC--AYDGEEAVEKAKANKYDIILLDLMLPKMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   D G DD + KP +  E+ AR+ AI RR +  
Sbjct: 64  VCQQIREFSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARSE 123

Query: 123 NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E+G +++  + R   + G+   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 HEEKEKAKTIESGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G ++   +   V+ HI +LR+K+
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKI 207


>gi|268319896|ref|YP_003293552.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|262398271|emb|CAX67285.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 242

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L  +  ED  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 38  LDLALNEDFDAILLDLMLPDLNGLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSD------GRDPEVQGEV 146
            + KP    E+LAR+ A+ RR+++   RA    + V     F+D       R        
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVQIE-KRAMGDTMGVQKVIHFNDLTIETANRIVHRGDST 156

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L +RE  +L  L+ N+   V + Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 157 VDLTKREYNLLMTLIENKNNVVTREQLLNKIWG-PESKIETNVVEVYVRYLRNKI 210


>gi|227889541|ref|ZP_04007346.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227850019|gb|EEJ60105.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 242

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L  +  ED  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 38  LDLALNEDFDAILLDLMLPDLNGLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSD------GRDPEVQGEV 146
            + KP    E+LAR+ A+ RR+++   RA    + V     F+D       R        
Sbjct: 98  YIVKPFAIEELLARLRAVLRRVQIE-KRAMGDTMGVQKVIHFNDLTIETANRIVHRGDST 156

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L +RE  +L  L+ N+   V + Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 157 VDLTKREYNLLMTLIENKNNVVTREQLLNKIWG-PESKIETNVVEVYVRYLRNKI 210


>gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2]
 gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2]
          Length = 240

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR  S  +P+I IS   S    +   + G DD + KP    E++ARV A++RR 
Sbjct: 64  LEICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQ 123

Query: 120 KV--SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    N R E G I V     DP      + G+   L  RE  +L +   + G+  ++  
Sbjct: 124 EAMSQNLRMEAGIITVHGVEIDPLAREVRLHGKSLDLTPREFDLLYFFARHPGEVFSRQA 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   ++G   E   E+ V SHI++LR K+
Sbjct: 184 LLDQVWGYQHEGY-EHTVNSHINRLRTKI 211


>gi|182413545|ref|YP_001818611.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840759|gb|ACB75011.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 228

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 16/166 (9%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R +RA  S +P++ +S   S++  +    +G DD + KP    E+ AR+ A+ RR 
Sbjct: 65  LSLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRA 124

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             S    R   G + +    R   V G+   L  RE  +LEYL+ + G+ V K  I   +
Sbjct: 125 SRSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHV 184

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGY 218
           +   FD   + NVV+  +S+LR K+      DP    +++ R +GY
Sbjct: 185 WDYSFDP--QTNVVDVLMSRLRSKI------DPDKTRIETLRGVGY 222


>gi|260904583|ref|ZP_05912905.1| two component transcriptional regulator, winged helix family
           protein [Brevibacterium linens BL2]
          Length = 250

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           DV  ++  + G  G +VL   R+ +  + VP++ ++            + G DD +NKP 
Sbjct: 56  DVCVLDVLMPGADGRQVLR--RLRQEENWVPVLLLTQVGEAVERAMALEEGADDYLNKPF 113

Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI------- 156
              E++AR+ A+ RR         T P+ V S G   +  G    +  RE  I       
Sbjct: 114 DPHELVARIRAVLRRTHSDGPPLATAPVLVSSFGLRVDRVGRRAWMGARELVITPKGFTL 173

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           LEYLM ++ + + ++++   ++G F+EAV    V+S +++LR+ L
Sbjct: 174 LEYLMVHQDELIERSRLLEILWG-FEEAVGTRAVDSRVAELRRVL 217


>gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX]
          Length = 232

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 33/228 (14%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           +RAL  +GY      DGV           E L +   + V  +   ++  G   L + R+
Sbjct: 21  ERALQLEGYQTRTAADGV-----------ETLAAVHSDPVDLLILDVMMPGVDGLGVCRV 69

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------- 118
           +RA   + P++ ++        +   D+G DD + KP    E+LAR+ A+ RR       
Sbjct: 70  LRAEGDRTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALLRRAAPTTGE 129

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++V + R + G  RV+  GR+ E+    F L       LE L  N G  +  + 
Sbjct: 130 GAAEPLIQVGDLRIDPGARRVWRAGREVELSKTEFDL-------LELLARNAGIVLDHST 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+  I+G +D   E   +  +IS LR+KL  +     + + R +GY++
Sbjct: 183 IYDRIWG-YDFGPESKNLAVYISYLRRKLEPEGTTPLIQTVRGVGYTL 229


>gi|53728807|ref|ZP_00348249.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208723|ref|YP_001053948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae L20]
 gi|126097515|gb|ABN74343.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 213

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 3/149 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +Q+P++ ++   S    +   ++G DD V KP   + ++AR+ ++ RR   +N+      
Sbjct: 58  AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDD 117

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +  + +    Q +   L   E ++L + MA+  K  ++ Q+   ++G  D  VE+  V
Sbjct: 118 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMAHPEKVYSREQLLDFVWG-NDIYVEDRTV 176

Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +S+I +LRK L    GF+  V + R  GY
Sbjct: 177 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 204


>gi|323700473|ref|ZP_08112385.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. ND132]
 gi|323460405|gb|EGB16270.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans ND132]
          Length = 236

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 13/162 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +RA S VP+I ++        +   + G DD V+KP   RE+LAR+ A+ RR       A
Sbjct: 67  LRAVSGVPVIMLTGRGEEIDRVVGLEMGADDYVSKPFQLRELLARIRAVLRRYGSGAEEA 126

Query: 127 ------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       E G + +  + R+  + G    L   E  ILE L  N G  V +  + 
Sbjct: 127 GDMAAVKAKPGIEIGEVHLNRNARNMTIGGLPVHLTSTEFDILEMLALNMGNVVDRVSLM 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
               G  +E  ++ V+  H+S LRKKL   +    +  + +L
Sbjct: 187 EKALG-RNEDFDDYVLNVHMSNLRKKLDRNVSIKTIRGRGYL 227


>gi|253573810|ref|ZP_04851153.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847338|gb|EES75343.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 234

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 17/164 (10%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R IRA S VP+I +S  D+P+    +     G DD V KP H   ++A++ A  RR  V 
Sbjct: 69  RQIRARSNVPIIFLSSRDHPA--DMVMSMQLGADDFVQKPFHFEVLIAKIQATLRR--VY 124

Query: 123 NNRAETGPIRVFSD-----GRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N   E   +R +       GR+     QG +  L + E  IL+ L+  + + V++ ++  
Sbjct: 125 NYNTERVELRTWRGATIEYGRNTVTAEQGTI-ELTKNEMLILKLLVEQKNRIVSREELIR 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +++   +  V +N +  ++++LRKKL N LG D  +++K   GY
Sbjct: 184 SLWD-NEHFVSDNTLTVNVNRLRKKLEN-LGLDAYIETKVGQGY 225


>gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 95/210 (45%), Gaps = 25/210 (11%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L + GY     D  V+L+G      +  LQ +   +   I   ++  G   + + + +
Sbjct: 18  RYLAEAGY-----DVSVALDG------QSGLQMATENNFQLIILDVMLPGMNGIAVCKAL 66

Query: 68  RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           R      P++ ++   S +  +   DSG DD + KP    E+LAR+ ++ RR        
Sbjct: 67  RQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNNDTAAAA 126

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + + N  +   + +  + +     G+   L   E R+LEY+M N  + +++ +I 
Sbjct: 127 TPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVLSRMEIL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204
             ++G+ D  +   VV+ +++ LRKK+  K
Sbjct: 187 ENVWGV-DFNMNTKVVDVYVNYLRKKVNRK 215


>gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
 gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 9/205 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++   + + EE ++ +       I   L+      LE
Sbjct: 6   LVVDDEKLIVKGIRFNLEQDGMEVDC--AYDGEEAVEKAKENKYDIILLDLMLPKMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   D G DD + KP +  E+ AR+ AI RR +  
Sbjct: 64  VCQQIREFSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARSE 123

Query: 123 NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E G +++  + R   + G+   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 HEEKEKAKTIEAGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G ++   +   V+ HI +LR+K+
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKI 207


>gi|113952823|ref|YP_729925.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113880174|gb|ABI45132.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 240

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 11/173 (6%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +R     +P+I ++    +   +   ++G DD ++KP + RE+LARV A+ RR 
Sbjct: 67  LDICRRLRETDVSLPVIIMTSRDEIDDRIAALETGADDFISKPFNVREVLARVKALIRRA 126

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    + S++  E G + +    R   + G    L  RE  +L+  M +  + +++
Sbjct: 127 TFCKSTFSNEFSSDLLEIGKLALNRAERTCTINGTALILTVREFDLLDCFMRHPRQALSR 186

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            Q+   ++G  D   +ENVV+  +  LRKKL        + + R +G+++  N
Sbjct: 187 GQLIQHVWG-DDYFGDENVVDVFVRYLRKKLEAGGSERVIQTVRGVGFALRMN 238


>gi|62182741|ref|YP_219158.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62130374|gb|AAX68077.1| response regulator in two-component regulatory system with BasS
           (OmpR family) [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322717242|gb|EFZ08813.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 222

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +GF+++   E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGFSTVRAAEHSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHNN 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L V N     G  + + DG++         L  +E  +L  LM   G  V +  +
Sbjct: 122 QGESELTVGNLTLNIGRHQAWRDGQE-------LTLTPKEYALLSRLMLKAGSPVHREIL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ IY  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 175 YNDIYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+  A   VP + ++   + +  +     G DD V KP    E++ARV AI RR  +++ 
Sbjct: 69  RLRNAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRRAGMADG 128

Query: 125 RAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             E  P+R      DPE +     G +  L   E R+L YL+ N  K + + Q+   ++G
Sbjct: 129 APE--PLRFADLELDPETREVRRAGRLVELTVTEYRLLHYLLVNARKVLTRAQLLDHVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             D   +  V+E+++S LR+K+
Sbjct: 187 -HDFGGDARVLETYVSYLRRKI 207


>gi|313114104|ref|ZP_07799656.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623513|gb|EFQ06916.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
           M  +++D A +++         G  +  F S E       +A  ++  ++  L G+ G  
Sbjct: 1   MIYIVEDDAAIRELEQYALQSSGYEVTSFESSESFWQAMHAAEPELVILDVMLPGEDGFS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  R   +  ++P+I ++   S   T+   D G DD ++KP    E L+RV A  RR 
Sbjct: 61  ILKKLRNTPSLRRLPIIMVTAKSSELDTVRGLDCGADDYISKPFGIMEFLSRVRAALRRS 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N      I + +   +  V G    L  +E  +L  L+ N    V +  I   +
Sbjct: 121 APEARPNVLSFHEILLDNARHNVTVSGTPVELTYKEYSLLRLLLENTNLVVTRETILQVV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D +VE   V+ HI  LRKKL +   +  + + R +GY +
Sbjct: 181 WGT-DISVESRTVDMHIRTLRKKLGDAGKY--ICTVRKVGYKL 220


>gi|296102122|ref|YP_003612268.1| hypothetical protein ECL_01761 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056581|gb|ADF61319.1| hypothetical protein ECL_01761 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 234

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 11/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I ++        L     G DD V KP +  E++ARV A+ RR K    + 
Sbjct: 70  LRRESTVPVIMVTALDQDVDKLMGLRLGADDYVIKPFNPSEVVARVEAVLRRTKAHVQQV 129

Query: 127 ETGPIR-----VFSDGRDPEVQ-GE--VFP-LPRRERRILEYLMANRGKRVAKTQIFSAI 177
              P+R     V+ D    EV  GE  V P L   E ++L YL+ N  K  ++ ++ +A 
Sbjct: 130 AAMPLRTPFITVYPDDFYIEVTVGEEVVCPVLTTTEFKLLTYLVRNPRKVCSREELLNAC 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               D    +  V+SH+SKLRKKL         +S R +GY +
Sbjct: 190 LPEGDTL--DRTVDSHMSKLRKKLELAGLHGVPESIRGMGYRL 230


>gi|291618228|ref|YP_003520970.1| TctD [Pantoea ananatis LMG 20103]
 gi|291153258|gb|ADD77842.1| TctD [Pantoea ananatis LMG 20103]
          Length = 228

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 113/216 (52%), Gaps = 17/216 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           +AL + G+   +  DG++++  +SL+ E++  +    DVS      + + + +  L R+ 
Sbjct: 23  KALTQKGFAVDWVADGLAVD--HSLQSEDY--ALVVLDVS------LPRLDGIEVLTRLR 72

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R    VP++ ++   +L   +   ++G DD + KP    E+ AR+ A+ RR +  + + +
Sbjct: 73  RRGQTVPVLMLTARTTLDDRVRGLNTGADDYLTKPFELDELDARLRALLRRSQGQSPQNQ 132

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           T G + +  +G     +  +   P RE  +L  LM  +G+ V++  ++   + L DEA  
Sbjct: 133 TLGQLVLNGEGYFLLAEKPLALTP-RESSVLTTLMQRQGRPVSRQHLYEQTFTLADEASP 191

Query: 187 ENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           E+ +E ++ ++RKKL    G D  + + R LGYS++
Sbjct: 192 ES-IELYVHRVRKKLA---GSDVGIVTLRGLGYSLE 223


>gi|260461766|ref|ZP_05810012.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|319785311|ref|YP_004144787.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|259032407|gb|EEW33672.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|317171199|gb|ADV14737.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 371

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 17/194 (8%)

Query: 36  EWLQ--SSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           EW +  S AR   S I   L+        G G   L   R  +     P+I ++   +++
Sbjct: 28  EWAKDLSEARYHASGIPYGLVLLDINLPDGNGLDYLREMR--KGRDSTPVIIVTARHTVE 85

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGE 145
             ++  ++G  D + KP   RE+ AR+ A+ R           G + + +  R   + G+
Sbjct: 86  DRIEGLNAGAADYLVKPFDPRELSARIHAVARSHGNFPKPYSVGALSINAAERRVALDGQ 145

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L  RE  IL+ +++  G  V K +I   +  L  E+ E N VE ++S+LRK    K+
Sbjct: 146 PVNLTAREWAILDCVLSRPGAVVLKRKIEEELLSLGSES-ESNTVEVYVSRLRK----KI 200

Query: 206 GFDPVDSKRFLGYS 219
           G D + + R LGYS
Sbjct: 201 GRDRIATLRGLGYS 214


>gi|258624938|ref|ZP_05719865.1| DNA-binding response regulator [Vibrio mimicus VM603]
 gi|258582794|gb|EEW07616.1| DNA-binding response regulator [Vibrio mimicus VM603]
          Length = 219

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 22/216 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL + G++     DG+  +       EEW       DV  ++  L  K + +  L  I  
Sbjct: 19  ALDQTGWVPELSQDGI--DALYRATAEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +  
Sbjct: 69  ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             +   S D R  +V  +G+   L   E +++ Y M N  K +++T++   IY   FD  
Sbjct: 127 MQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEHIYKQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + N +E  I ++RK    K+  D + + R LGY +
Sbjct: 186 -DSNTIEVFIGRIRK----KIAPDVIKTVRGLGYQL 216


>gi|170720379|ref|YP_001748067.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758382|gb|ACA71698.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 232

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 82/161 (50%), Gaps = 8/161 (4%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L + R +R     P++ ++        +   D G DD V KP+  R +LAR+
Sbjct: 57  LMLPGEDGLSICRRVRGQYAGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARI 116

Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            A+ RR + +  + +    G + + +  R+  +  ++  L   E  +L  L +N G+ ++
Sbjct: 117 QALLRRSEPAQGKTQELAFGALSIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLS 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           + QIF+A+ G+  +  ++  ++  ISK+R     K+G DP+
Sbjct: 177 REQIFTALRGVGYDG-QDRSIDVRISKIRP----KIGDDPI 212


>gi|114764425|ref|ZP_01443651.1| probable two-component response regulator [Pelagibaca bermudensis
           HTCC2601]
 gi|114543179|gb|EAU46197.1| probable two-component response regulator [Roseovarius sp.
           HTCC2601]
          Length = 244

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 15/229 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD   V++   AL  D G +      ++    L      D++ I+  L  +GE  
Sbjct: 13  VIAIVDDDPQVRETLSALMHDSGFAAVSCADIDAFHALGDPPPVDLALIDLRL--RGESG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L   +R   ++P++ ++        +   ++G DD + KP + RE++AR+ A+ RR  
Sbjct: 71  LTLAIHLRERHEIPIVMLTGVGDEIDKIIGLETGADDYLIKPFNPRELVARIRAVLRRYG 130

Query: 121 VSNNRAET--------GPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            ++ RA          G  R+  D R   +  GE  PL   E R+LE+L  N  + V + 
Sbjct: 131 HASARAVAPGKRKIVFGEKRIDLDARRLLDGTGEEVPLTNAEYRLLEFLARNPERVVPRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218
           ++  A+ G   +   +  V+  I +LR+K+  ++   PV   ++R  GY
Sbjct: 191 ELLEAL-GADTQRYVDRTVDVLILRLRRKI-ERVPAKPVHLQTRRARGY 237


>gi|52140967|ref|YP_085862.1| response regulator [Bacillus cereus E33L]
 gi|51974436|gb|AAU15986.1| response regulator [Bacillus cereus E33L]
          Length = 230

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G++  L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATETTEKTIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + I+   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLIWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|73539148|ref|YP_299515.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122485|gb|AAZ64671.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 13/163 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA     P++ ++   ++   +   ++G DD + KP   +E+ AR+ A+ RR 
Sbjct: 70  LDVLRALRARGVSTPVLILTARDAIADRVAGLNAGADDYLVKPFDLQELAARMHALARR- 128

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +  RAE     G I +    R+  + GE   L  RE  +L  LMA  GK  +  Q+  
Sbjct: 129 --AEGRAEPILSYGAISLNPATREVTLNGEPVHLSAREFSLLSALMARPGKVWSVAQLQE 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y  +D+ V  N VE +I  LRKK    L    + + R +GY
Sbjct: 187 RLYS-WDDEVGSNTVEVYIHALRKKFGAAL----IRNIRGVGY 224


>gi|94986440|ref|YP_605804.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94556721|gb|ABF46635.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 219

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 3/158 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L + +R +S  P++ +S    +Q  +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  LDLVQALRQYSSTPVLVLSARSGVQERVAGLNAGADDYLTKPFAMPELDARITALLRR-T 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G   + +      V  +   L   E RILE +M    +  ++  I S +YG 
Sbjct: 120 AAGTGVNLGNTSLSTSSLLLTVNDKNVNLTEHEARILELMMRTPERVFSRADIESHLYGW 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E    N VE  IS+LRKKL        + + R +GY
Sbjct: 180 --ETPNSNSVEVRISQLRKKLEQAQSDLRIRTIRNVGY 215


>gi|332292108|ref|YP_004430717.1| two component transcriptional regulator, winged helix family
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170194|gb|AEE19449.1| two component transcriptional regulator, winged helix family
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 227

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 11/164 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSL---QTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E   +IRA+S +    I+ + +     + +  FD+G DD + KPI  + ++++V A+ R
Sbjct: 65  IEACEVIRANSDLDQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLR 124

Query: 118 RLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R K   VS+   + G + +  +        E   LPR+E  +L  L +  GK   +  I 
Sbjct: 125 RFKEEGVSSQITKVGKLVINREEYKVYKGKEELSLPRKEFELLSLLTSKPGKVFTREDIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++GL +  V    ++ HI    +KLR K+G +   + + +GY
Sbjct: 185 DKVWGL-EVVVGGRTIDVHI----RKLREKIGDESFKTVKGVGY 223


>gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 13/175 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 121 VS------NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++      ++  +T P++     +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LASVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNN 234


>gi|293394940|ref|ZP_06639230.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291422691|gb|EFE95930.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 238

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 2/150 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L + R +R  +++P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 59  LMLPGSDGLSVCRELRRFTELPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 118

Query: 113 AAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             I RR  + + ++ E   + +         QG+V  L   E R+L+ L +  G   ++ 
Sbjct: 119 KTILRRCYRPAESQQEDALLHIDEPRFQASYQGQVLDLTPAEFRLLKTLASQPGNVFSRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 179 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKL 207


>gi|118479940|ref|YP_897091.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043892|ref|ZP_03111129.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866817|ref|YP_002752195.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228948563|ref|ZP_04110842.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229187082|ref|ZP_04314231.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|118419165|gb|ABK87584.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025228|gb|EDX63898.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225790943|gb|ACO31160.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228596391|gb|EEK54062.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228811062|gb|EEM57404.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL Y M N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMRNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
 gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
          Length = 230

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 21/188 (11%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRAHSQ-VPLIGI 78
           SL F  +    A++ V A++A    + + +           LE+ R +R+    +P++ +
Sbjct: 21  SLSFNGYSVELAQDGVEALDAITNNRPDALILDVMMPRLDGLEVCRQLRSTGDDLPILVL 80

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD-G 137
           +   S+   +   D+G DD + KP    E+LAR+ A+ RR  VS++  ++  +  FSD  
Sbjct: 81  TARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR-TVSDDSGDSQKM-TFSDLT 138

Query: 138 RDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
            DP  +     G    L R E  +LE L+AN  + + +++I   ++G FD     N +E 
Sbjct: 139 LDPVTREVTRGGRQISLTRTEFSLLEMLIANPRRVLTRSRILEEVWG-FDFPTSGNALEV 197

Query: 193 HISKLRKK 200
           +I  LR+K
Sbjct: 198 YIGYLRRK 205


>gi|52078905|ref|YP_077696.1| sensory transduction protein YclJ [Bacillus licheniformis ATCC
           14580]
 gi|52784279|ref|YP_090108.1| YclJ [Bacillus licheniformis ATCC 14580]
 gi|319648791|ref|ZP_08003002.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2]
 gi|52002116|gb|AAU22058.1| hypothetical sensory transduction protein YclJ [Bacillus
           licheniformis ATCC 14580]
 gi|52346781|gb|AAU39415.1| YclJ [Bacillus licheniformis ATCC 14580]
 gi|317389210|gb|EFV70026.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2]
          Length = 228

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 33/226 (14%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
             K+G+   F  DG  LEG+N  +  +W       D+  I+  L       + + + +R 
Sbjct: 20  FAKEGFETEFVHDG--LEGYNRFKSGDW-------DLLIIDIML--PSMDGVTICKKVRE 68

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-------VS 122
            S VP+I ++   +    +  F+ G DD V KP     ++AR+ A+ RR +         
Sbjct: 69  ESTVPIIMLTAKDTESDQVLGFELGADDYVTKPFSPLALVARIKAVSRRYQNAGRQDSAD 128

Query: 123 NNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++  ET   ++    R+  + G ++  L  +E  +L YL+ +  +  ++ Q+   ++G +
Sbjct: 129 SDTLETEHFKINKKTREVFLDGVQIQNLTPKEFDLLYYLVQSPKQVFSREQLLEQVWG-Y 187

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221
               +E  V+ HI +LRKKL +       DS+ FL      GY  D
Sbjct: 188 QFYGDERTVDVHIKRLRKKLGS-------DSRPFLYTVWGVGYKFD 226


>gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 20/202 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  +   DG           EE LQ    E    I   L+      LE+ + +RA
Sbjct: 22  LEKEGYEVVVAYDG-----------EEALQKVESESPDLIVLDLMLPKIDGLEVAKQVRA 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126
               P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   + + A   
Sbjct: 71  KRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDATVSPANDD 130

Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G + +  D      +GE   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 131 RTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHLLQTVWG-Y 189

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D   +   V+  + +LR+K+ +
Sbjct: 190 DYFGDVRTVDVTVRRLREKIED 211


>gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 236

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 18/122 (14%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--------------GPIRVFSDGRD 139
           G DD + KP   RE++AR+ AI RR   +  +AE+              G +++  D  +
Sbjct: 95  GADDYMTKPFSPREVVARIKAILRR---TEGKAESIEEKTEDMEATILIGDLKILPDSYE 151

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             +Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR 
Sbjct: 152 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 210

Query: 200 KL 201
           K+
Sbjct: 211 KI 212


>gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
 gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
          Length = 230

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 5/152 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGP 130
           +P+I ++        +   D+G DD V KP    E+ +R+ A+ RR + S        G 
Sbjct: 78  IPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLRRARPSLIAEAVTCGD 137

Query: 131 IRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           I++  +  R    + EV   P  E R+L++L+ N G+  ++ Q+ +A++G  D  VE   
Sbjct: 138 IQIDRAAHRVRRGEKEVHLGP-TEFRLLDHLIQNPGRVFSREQLLNAVWG-SDVFVEART 195

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           V+ HI +LRK L      +P+ + R  GY+++
Sbjct: 196 VDVHIGRLRKALNAHGHQNPIRTVRSAGYALE 227


>gi|116049581|ref|YP_791614.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389989|ref|ZP_06879464.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAb1]
 gi|313106655|ref|ZP_07792876.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           39016]
 gi|115584802|gb|ABJ10817.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879378|gb|EFQ37972.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           39016]
          Length = 230

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 25/225 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSA--REDVSAIEAFLIGK 56
            +LIDD   ++      F    ++ +G+  LE    EE L  +A  R D+  ++  L  +
Sbjct: 8   ILLIDDEPQIRK-----FLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDR 62

Query: 57  -GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G+ +L   R +R  SQVP++ +S   S    +   D G +D V KP   +E LARV  +
Sbjct: 63  DGQDIL---RDLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVL 119

Query: 116 YRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            R+     +       GP++V    R   ++G    L R+E  +L  L  + G+ V + Q
Sbjct: 120 LRQAAQGESPEAAVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQ 179

Query: 173 IFSAIYGLFDEAVEENVVESH-ISKLRKKLRNKLGFDPVDSKRFL 216
           +   I+G        +V ++H +  +   LR KLG DP  S RFL
Sbjct: 180 LLKDIWG------PTHVEDTHYLRVVVGHLRQKLGDDPA-SPRFL 217


>gi|149365128|ref|ZP_01887163.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|165926923|ref|ZP_02222755.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165935925|ref|ZP_02224495.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|167422671|ref|ZP_02314424.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167467549|ref|ZP_02332253.1| putative two-component response regulator [Yersinia pestis FV-1]
 gi|218930056|ref|YP_002347931.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|229838602|ref|ZP_04458761.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229899168|ref|ZP_04514311.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|115348667|emb|CAL21612.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|149291541|gb|EDM41615.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|165916070|gb|EDR34677.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921274|gb|EDR38498.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|166958378|gb|EDR55399.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|229687570|gb|EEO79643.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694968|gb|EEO85015.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 23/222 (10%)

Query: 1   MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGK 56
           M +LI +D A +++G + +        EG+  +  E  +Q+ A   ++    I   ++  
Sbjct: 1   MKILIAEDNAHIRNGLMEVLAH-----EGYRPIAAENGVQALALYRQQQPDFIILDIMMP 55

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
                ++ R IR H  Q P+I +S        +   + G DD ++KP    E+ AR+  I
Sbjct: 56  ELDSYKVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTI 115

Query: 116 YRRL--KVSNNRAETG----PIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRV 168
            RR   KV  +  + G     + VF +     ++GE    L  RE  IL YL  ++G+ V
Sbjct: 116 VRRCLRKVPESAEDAGFPFGDLMVFPN-ELCAIRGETRLELSLREVNILRYLYQHKGRVV 174

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
            +  +F A++G +D   +   ++ HISKLRK +      DPV
Sbjct: 175 TRDMLFDAVWG-YDHLPQSRTLDQHISKLRKTIE----LDPV 211


>gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 237

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 10/198 (5%)

Query: 13  DGYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           D  +  F + G++ EGF    +L  +E  Q ++      +   ++      LE+ + +R 
Sbjct: 14  DAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANKFDLLILDIMLPEMNGLEICKAVRE 73

Query: 70  -HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSN 123
            ++ VP++ ++   S +      +SG DD + KP    E++ARV ++ RR +     + +
Sbjct: 74  ENTHVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRRSRNFNSNIPD 133

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N      I+V    +     G+   L   E ++L   +   G+ +++T++   ++G+ + 
Sbjct: 134 NSYRFSDIKVNDSSKTVTRNGKKIALTSTEYKLLLAFLKAPGRVISRTELLENVWGV-NY 192

Query: 184 AVEENVVESHISKLRKKL 201
            +  NVV+ +++ LRKKL
Sbjct: 193 DIGTNVVDVYVNYLRKKL 210


>gi|281421933|ref|ZP_06252932.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri
           DSM 18205]
 gi|281403987|gb|EFB34667.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri
           DSM 18205]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           + VP+I ++   +   T+  F+ G DD ++KP   RE++ RV A+ RR       A+   
Sbjct: 77  ANVPIIFLTARDTENDTVTGFNIGADDYISKPFSIREVMVRVRAVLRRTAEQAGDADESK 136

Query: 131 IRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           I  +       D +   + GE  P  + E  +L   +  RGK  ++ ++   ++   D  
Sbjct: 137 IINYQGLQLNLDKKTVSIDGEAIPFTKTEFELLRLFLEERGKVFSRQELIDRVWPK-DVM 195

Query: 185 VEENVVESHISKLRKKL 201
           V +  V+ +I+++RKK+
Sbjct: 196 VLDRTVDVNITRMRKKI 212


>gi|317055319|ref|YP_004103786.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447588|gb|ADU21152.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I+   ++P+I +S        L  F+ G+DD + KP   +E++ARV A+  R K S N  
Sbjct: 67  IQKIKKIPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARVRAVLNRAKASGNTE 126

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +      + +    R+ ++ GE   +  +E  +L YL+ N    +++ ++   ++G FD 
Sbjct: 127 DIIKYQGLEINFTAREVKIDGEKVSMTPKEYDLLFYLVRNMNIALSREKLLEEVWG-FDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLG 206
             ++  +++HI    K LRN LG
Sbjct: 186 YGDDRTIDTHI----KMLRNSLG 204


>gi|167464653|ref|ZP_02329742.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384704|ref|ZP_08058372.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150403|gb|EFX43896.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 230

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 16/172 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S  P++ +S        ++  D G D+ + KP +  ++LAR+ A+ RR  
Sbjct: 63  LEICRFLRQSSSTPILFLSSQKDDSVIIEALDQGADEYITKPYNPGQLLARIRALLRRCS 122

Query: 121 V-SNNRAETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + ++N  E   IR      D      E QGE   L  +E  +L  L +N        ++F
Sbjct: 123 IRTSNSGENRVIRFPGLSIDLASHMVEAQGETVSLSAKEFALLSLLASNPNHVFRIEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
             ++ + D   +   +  H+S LRKK+      +P D K     R +GY  +
Sbjct: 183 EKVWSV-DSLGDPRTLIVHVSNLRKKIEP----NPADPKYIITVRGVGYKFN 229


>gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 237

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 13/166 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           +R  S+VP+I ++    +   +   + G DD V KP   +E+ +RV +I RR++      
Sbjct: 71  VRKASRVPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSILRRMETTKPLP 130

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN     G I V ++ R          L   E  +LE L  + G+ +++++    +
Sbjct: 131 FHHQSNGVIRFGSITVDTNKRQVFKGRSRISLTHMEFSVLELLATHPGEPISRSEFLHKV 190

Query: 178 YGLFDEA-VEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           +G   EA V+  VV+ HIS LR+KL +  G +P  + +   +GY++
Sbjct: 191 WGYSHEANVDTQVVDIHISHLRRKLGDSSG-NPKLIHTVHGVGYTL 235


>gi|116630026|ref|YP_815198.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|116095608|gb|ABJ60760.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
          Length = 246

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L  +  ED  AI   L+      LE+ R +R     P+I ++   S+   +   D G DD
Sbjct: 42  LDLALNEDFDAILLDLMLPDLNGLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADD 101

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSD------GRDPEVQGEV 146
            + KP    E+LAR+ A+ RR+++   RA    + V     F+D       R        
Sbjct: 102 YIVKPFAIEELLARLRAVLRRVQIE-KRAMGDTMGVQKVVHFNDLTIETANRIVHRGDST 160

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L +RE  +L  L+ N+   V + Q+ + I+G  +  +E NVVE ++  LR K+
Sbjct: 161 VDLTKREYNLLMTLIENKNNVVTREQLLNKIWG-PESKIETNVVEVYVRYLRNKI 214


>gi|17549382|ref|NP_522722.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431635|emb|CAD18312.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 219

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 86/170 (50%), Gaps = 3/170 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G+  LE+ R +RA S +P++ ++        L   + G DD + KP   RE++AR+
Sbjct: 51  LMLPGKDGLEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARI 110

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I RR++ S  ++++  +++ +      ++G+   L   E R+L  L    G+ +++  
Sbjct: 111 KTILRRVQRSGAQSDS-LLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRAN 169

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   IY      V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 170 LLEQIYD-DHRVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 218


>gi|323139801|ref|ZP_08074835.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322394937|gb|EFX97504.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 227

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 8/130 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD+G DD V KP H  E+LAR+ A+ RR    + N    G +R+ +      V G    L
Sbjct: 91  FDAGADDYVAKPFHMEEVLARIRALLRRRTGHATNELVCGAVRLDTKSGRVVVDGAPVKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM + G+ V++ +I   +Y   FD   + N VE  + +LRK    KLG D
Sbjct: 151 TSHEYRLLAYLMHHSGRVVSRGEIIEHLYDQDFDR--DSNTVEVFVGRLRK----KLGVD 204

Query: 209 PVDSKRFLGY 218
            + + R LGY
Sbjct: 205 LIQTVRGLGY 214


>gi|308234600|ref|ZP_07665337.1| two component transcriptional regulator, winged helix family
           protein [Atopobium vaginae DSM 15829]
          Length = 223

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 2/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           R+   +P++ ++     Q  +D  D+G DD + KP    E+LAR+ A+ RR   V   + 
Sbjct: 68  RSGDSMPILILTARTFTQDKVDGLDAGADDYLTKPFEAPELLARLRALTRRQGDVIIEQM 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +     +     D   +     L  +E  +L+ L++   + V+K  + + ++G   +A  
Sbjct: 128 KFADFSLDLSTHDLMCKNHSVHLSGKEFEVLKMLLSAPSRVVSKQDLLTYVWGTTADA-S 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           EN VE+++S LRKKL        + + R LGY ++
Sbjct: 187 ENSVEAYVSFLRKKLAYVHSKVQITTLRMLGYRLE 221


>gi|307129734|ref|YP_003881750.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya
           dadantii 3937]
 gi|306527263|gb|ADM97193.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya
           dadantii 3937]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 23/201 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L +D +  L   DGV     N L+  + L    + D+  ++  L G  G +VL     +R
Sbjct: 23  LKRDNFQVLLAGDGV-----NGLDMAQRL----KPDLILLDVMLPGMNGTEVLT---ALR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126
             S VP+I ++        +     G DD V KP H  E++ARV A+ RR    ++  R+
Sbjct: 71  RKSDVPVIMVTAMGDDTDKIGALRYGADDYVTKPYHPGEVVARVQAVLRRTCGVMTPGRS 130

Query: 127 ET-GPIRVFSDGR-----DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            T G + V  D       D + Q ++  L   E  +L  L+  + +  ++ ++  A   L
Sbjct: 131 LTFGSLEVDLDAMVATVADAQGQRQLLDLTPTEFSLLATLLRAQTRAFSRQELLEAC--L 188

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D    E VV++HI  LRKKL
Sbjct: 189 PDSDALERVVDTHIYNLRKKL 209


>gi|325680084|ref|ZP_08159651.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
 gi|324108247|gb|EGC02496.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
          Length = 223

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR +   P++ ++        +  F +G DD + KP    E+ AR+AA  RR  
Sbjct: 60  IEVCRRIRDYVPCPIVFLTARIEDSDKVSGFAAGGDDYIIKPFSLEELGARIAAHIRREN 119

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S  + +    G + V          GE   L ++E +ILE L  N G+  +K +I+  +
Sbjct: 120 RSAAKRDVLLCGSLSVDYGNMTVSSGGEEINLAKKEFQILELLSRNTGQVYSKERIYEKV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  +D   + +VV  HI +LR KL        +++   +GY
Sbjct: 180 WS-YDAEGDSSVVAEHIRRLRSKLSKYGEGSHIETVWGMGY 219


>gi|229171432|ref|ZP_04299017.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612136|gb|EEK69373.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNIPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220


>gi|169343589|ref|ZP_02864588.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298149|gb|EDS80239.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 269

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 8/187 (4%)

Query: 27  EGFNSLEF---EEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           EGFN LE    EE L+  +   V  AI   ++ K +  L + R IR  S  P+I ++   
Sbjct: 71  EGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG-LAVCRNIREVSNTPIILLTAKS 129

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDP 140
             +  L  ++ G DD + KP   + +LA+  A+ RR    N  N  +   + +     + 
Sbjct: 130 QEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTLNDKNILDFNGLTINKLSHEV 189

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           ++ GE   L  +E  +L YL +N G  +++ +I   ++G +D   +   V+++I +LR+K
Sbjct: 190 KLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG-YDYFGDIRTVDTNIKRLREK 248

Query: 201 LRNKLGF 207
           L +K  +
Sbjct: 249 LLDKANY 255


>gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 248

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 13/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  + +
Sbjct: 67  RRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPTVS 126

Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             ET            G + V ++ R     G+   L   E  +LE L    GK V + +
Sbjct: 127 VTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVPRAE 186

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201
           I   ++G     A +  VV+ ++++LR KL
Sbjct: 187 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 216


>gi|118591897|ref|ZP_01549292.1| putative transcription regulator protein [Stappia aggregata IAM
           12614]
 gi|118435540|gb|EAV42186.1| putative transcription regulator protein [Stappia aggregata IAM
           12614]
          Length = 245

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 14/174 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE  LEL   +R  S VP++ ++        +   ++GVDD ++KP   RE++ R+AAI 
Sbjct: 79  GETGLELAVSLREESSVPILMLTARSETPDRIAGLEAGVDDYLSKPFEPRELMLRIAAIL 138

Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKT 171
           RR      + +     GP   F+  R     GE    L  RE++IL       G  V + 
Sbjct: 139 RRGNQQPVIVSEEIHFGPFS-FNSARGELKNGEAMVRLTDREKQILSIFAEQPGATVPRH 197

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSIDWN 223
           +I        D  + E  V+  I++LR+K+    G +P+   + R +GY +  +
Sbjct: 198 KIVGD-----DSGLGERTVDVQINRLRRKIETDPG-NPIYLQTVRGIGYRLACD 245


>gi|89895531|ref|YP_519018.1| hypothetical protein DSY2785 [Desulfitobacterium hafniense Y51]
 gi|89334979|dbj|BAE84574.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 222

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 32/223 (14%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65
           +  LVK+GY       G   E   +L  E       + D+  ++  L G  GE ++  P+
Sbjct: 20  EEVLVKEGYAVARAYSGT--EALLALPVE-------KPDLILLDLMLPGLSGEDIM--PK 68

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------- 118
           +      +P+I +S    +   +     G  D + KP H +E+LARV    R+       
Sbjct: 69  L----KGIPVIVVSAKTDVDDKVGLLLEGAADFITKPFHMKELLARVVVGLRKGPEPDKA 124

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L  ++ R +T    V+    D EV+     L R E  IL+ LM N  + + K+ +   I
Sbjct: 125 VLAFADIRLDTALHTVWV--ADKEVR-----LTRTEYAILKLLMQNPAQVITKSLLLDRI 177

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G   +  E + ++ HIS LR+KLR   G D +++   +G+ +
Sbjct: 178 SGDTPDCTESS-LKMHISHLRRKLREASGRDYIEAVWGIGFKL 219


>gi|307298063|ref|ZP_07577867.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916149|gb|EFN46532.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 224

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 9/162 (5%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L + IR  +S++P+I ++   S    +   + G DD V KP + R ++AR+ A+ RR 
Sbjct: 60  LDLVKKIRTMYSRIPIIFLTARKSDLDMILGLELGADDYVTKPFNPRALVARIKAVMRRT 119

Query: 120 KVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++S    ++   G   V          G+   L RRE  +L+ L  N G+   + ++   
Sbjct: 120 EISGTLEDKLTIGDAVVNLKSYTVTKNGKSEELTRREFELLKLLAENPGRVFTREELLDK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G+ D   +   V+ HISKLR+K+    GF  + + R +GY
Sbjct: 180 VWGM-DFFGDFRTVDVHISKLREKVGE--GF--IKTVRGVGY 216


>gi|284007315|emb|CBA72665.1| two-component system, OmpR family, response regulator PhoP
           [Arsenophonus nasoniae]
          Length = 168

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 2/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           ++P++ ++     Q  +   +SG DD V KP H  EILAR+ A+ RR   +++   + G 
Sbjct: 11  KLPILILTARERWQEKVIALNSGADDYVTKPFHLEEILARIQALMRRNSGLASQILQLGD 70

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
             +    ++  ++ +   L   E  ILE LM N  K V+K  +   +Y    E  E + +
Sbjct: 71  FVIDMSRKEFTIKDKNIKLTAFEYTILETLMRNNSKVVSKESLMRQLYP-DAELRESHTI 129

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  + +LRKK+  +   D + + R  GY  D
Sbjct: 130 DVLMGRLRKKIMQEWPNDVIVTVRGQGYRFD 160


>gi|229059658|ref|ZP_04197036.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|229166864|ref|ZP_04294611.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228616492|gb|EEK73570.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228719671|gb|EEL71270.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 68  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQITVSQS 127

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  V  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 128 IQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +L    + + R LGY ++
Sbjct: 187 NERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLE 222


>gi|116253844|ref|YP_769682.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258492|emb|CAK09596.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 21/171 (12%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA  +Q  ++ ++   + +  +   D G DD + KP    E  ARV  + RR 
Sbjct: 60  LDVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRR- 118

Query: 120 KVSNNRAET---GPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +  R+ T   G I      R FS G  P        +P RE  +LE L    GK VAK
Sbjct: 119 -QAGLRSATVGFGGITFDLNSRTFSSGDTP------LDIPARELGLLEILFMRAGKVVAK 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I  ++   FD+ +  N +E ++S+LRK+L +  G   V + R +GY +D
Sbjct: 172 EAIIQSLTA-FDDDISANAIEQYVSRLRKRL-SPYGL-TVKTARGIGYYLD 219


>gi|319796301|ref|YP_004157941.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315598764|gb|ADU39830.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 218

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 6/149 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
            P++ ++    L   ++  D G DD + KP   RE+LAR+ AI RR    +++   +G +
Sbjct: 73  TPVLVLTARDGLDDRINSLDLGADDYLLKPFEFRELLARMRAIVRRRDGAAHSLVGSGVL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           ++    R+  V G    L  RE  +L  L+   G  +++ Q+ + IYG + E V  N ++
Sbjct: 133 QLDLTTREVLVNGAREALTAREFALLHALLERPGAILSREQLENRIYG-WGEEVTSNAID 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I  +R+    KLG + + + R LG+ +
Sbjct: 192 VLIHGMRR----KLGAESIRNVRGLGWRV 216


>gi|311748341|ref|ZP_07722126.1| DNA-binding response regulator YycF [Algoriphagus sp. PR1]
 gi|311302774|gb|EAZ81098.2| DNA-binding response regulator YycF [Algoriphagus sp. PR1]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 10/135 (7%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP---EVQGEV 146
           FD G DD + KPI  R +++R+AA++RR LK    + +   I+  +  R     +  G+ 
Sbjct: 99  FDVGADDYITKPIKPRALMSRIAALFRRELKKEQEQVQI-KIKDLTIDRGSYTIDKSGKT 157

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             LP++E  +L +L  N     ++ ++   I+G  D  V    V+ HI    +K+R K+G
Sbjct: 158 ITLPKKEFELLYFLAKNPNMVFSRDELLQNIWGA-DVFVLARTVDVHI----RKVREKIG 212

Query: 207 FDPVDSKRFLGYSID 221
            D + + + +GY  D
Sbjct: 213 DDYITTVKGVGYKFD 227


>gi|256397578|ref|YP_003119142.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256363804|gb|ACU77301.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 230

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 21/192 (10%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           G+++ GF   E +         DV  ++  +I    +VL   R +R  +Q P+I ++   
Sbjct: 19  GLAILGFEVRETDADADPQVAADVVLLDCGVIDN--EVLAYCRRLRRRTQAPIIAVTQRV 76

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-------------TG 129
            LQ  L   ++G+DD   +P   +E+ AR+     RL V+  R +              G
Sbjct: 77  DLQAWLRGHEAGIDDYAVQPFGLQELAARL-----RLAVAPGRDQPAPVPAGPPRRLTAG 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P+ V  D R   V G    L  +E ++L  LM   G+ V + ++ + ++    E  E + 
Sbjct: 132 PLVVSEDARAVTVHGTRIDLRPKEYQLLVVLMRQLGRAVPREELVAQLWPAGWEGAERS- 190

Query: 190 VESHISKLRKKL 201
           +E H++ LR K+
Sbjct: 191 LEVHVASLRAKI 202


>gi|167766879|ref|ZP_02438932.1| hypothetical protein CLOSS21_01396 [Clostridium sp. SS2/1]
 gi|167711427|gb|EDS22006.1| hypothetical protein CLOSS21_01396 [Clostridium sp. SS2/1]
          Length = 222

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 84/160 (52%), Gaps = 3/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++   S    L   + G DD + KP + + + AR++A+ +R    
Sbjct: 64  VCRAIREKSEVPIIVVTSRDSEMDELMSINLGADDFITKPYNTQILSARISAMLKRTHKE 123

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N+  +   +++  +      + ++  L + E RIL  L+ ++   V++ Q+  +++  
Sbjct: 124 KVNDFLQYQGLKLQLNSSTVIYKDQIIELSKNEMRILYTLLQHKESIVSRDQLMESLWQ- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E +++N +  +++++RKKL      D + +KR  GY I
Sbjct: 183 SNEFIDDNTLTVNVNRVRKKLEAAGLKDFIKTKRGQGYMI 222


>gi|163784708|ref|ZP_02179524.1| Two-component response regulator czcR [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880026|gb|EDP73714.1| Two-component response regulator czcR [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 196

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 20/168 (11%)

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           L  IIR  + Q P++ ++   + Q  +   + G DD ++KP    E++ARV A+ RR   
Sbjct: 40  LCEIIRKKNIQTPILMLTAKSATQDKVKGLNIGADDYLSKPFDMEELIARVKALIRRSST 99

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                LK++N   +     V+ +G+  E+  ++F        IL+ L+ NRGK V+   +
Sbjct: 100 NKSNVLKINNYTFDIENRIVYKNGKKIELTPKLFC-------ILQQLLINRGKIVSYDAL 152

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  + + D   +E  V ++I  LRK L +K   D + +   +GY I+
Sbjct: 153 MNRCWDITDYPTKE-TVRANIKLLRKLLEDK---DLIKNIPGVGYKIE 196


>gi|8515817|gb|AAF76190.1|AF271295_1 sensory kinase [Mycobacterium smegmatis]
          Length = 186

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 5/118 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121
           +RA S VP+I ++   S    +   + G DD V KP   RE +ARV A+ RR      ++
Sbjct: 67  LRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSAREFIARVRAVLRRGGDDDSEM 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S+   ++GP+R+  +     V G+   LP     +LEY M N G+ +   Q+   + G
Sbjct: 127 SDGVQQSGPVRMDVERHVDSVNGDTITLPLPVFDLLEYGMRNSGRVLTHGQLIDRVSG 184


>gi|1575690|gb|AAB38789.1| response regulator [Synechococcus elongatus PCC 7942]
          Length = 223

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 6/140 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+ +A    P++ ++    LQ  +   D+G DD + KP    E+LARV A+ RR   +  
Sbjct: 65  RLRQAQDSTPVLVLTARDGLQDLVQGLDAGADDYLVKPFRLAELLARVRALLRRSPQTQT 124

Query: 125 RAETGPIRVFSDGRDPEVQGEVF---PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 +R+  D     VQ + +   PL  RE ++LE LM + G+ +++ Q+   ++ + 
Sbjct: 125 PLLQVGVRL--DPAQATVQVDDYSPMPLTAREFQLLEALMHHPGQILSRDQLLDQLWPM- 181

Query: 182 DEAVEENVVESHISKLRKKL 201
           D     NVV + +  LR+KL
Sbjct: 182 DAEPSSNVVAAQVRLLRRKL 201


>gi|18310907|ref|NP_562841.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18145589|dbj|BAB81631.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 265

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 8/187 (4%)

Query: 27  EGFNSLEF---EEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           EGFN LE    EE L+  +   V  AI   ++ K +  L + R IR  S  P+I ++   
Sbjct: 67  EGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG-LAVCRNIREVSNTPIILLTAKS 125

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDP 140
             +  L  ++ G DD + KP   + +LA+  A+ RR    N  N  +   + +     + 
Sbjct: 126 QEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTLNDKNILDFNGLTINKLSHEV 185

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           ++ GE   L  +E  +L YL +N G  +++ +I   ++G +D   +   V+++I +LR+K
Sbjct: 186 KLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG-YDYFGDIRTVDTNIKRLREK 244

Query: 201 LRNKLGF 207
           L +K  +
Sbjct: 245 LLDKANY 251


>gi|332971320|gb|EGK10283.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 9/158 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR  S VP++ ++     +  L+    G DD V KP   RE++ARV AI RR   
Sbjct: 62  EVCREIRRQSAVPILMLTAKVEERHRLEGLAIGADDYVIKPFSPREVVARVQAILRRSAD 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L       + G + V +  +     G+   L   E R+++ L  N G+  ++ ++   +
Sbjct: 122 DLLAERVSFQHGDLIVDTRTKTVCKAGQPVHLTPIEYRLIQILARNPGRPFSREELVEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +G FD + +E  ++ H+    K LRNK+  DP +   F
Sbjct: 182 FG-FDYSGDERTIDQHV----KNLRNKVEPDPKNPTYF 214


>gi|306485914|gb|ADM92603.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR + +N   
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137

Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|304398496|ref|ZP_07380369.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308189007|ref|YP_003933138.1| transcriptional regulator [Pantoea vagans C9-1]
 gi|304354001|gb|EFM18375.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308059517|gb|ADO11689.1| Probable transcriptional regulator [Pantoea vagans C9-1]
          Length = 219

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 18/204 (8%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPR------IIRAHSQ---VPLIG 77
            +L+   W     R+ V A  A+  G    VL    LPR      + RA  +    P++ 
Sbjct: 18  QALQGAGWSVDWVRDGVYAQNAWSEGGYSCVLLDLGLPRDDGLQVLRRARGRGDATPVLI 77

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSD 136
           ++   ++   +   DSG DD + KP   +E++AR+ AI RR    +++   +G +++   
Sbjct: 78  LTARDTVAQRIQGLDSGADDYLLKPFDLQEVMARMRAITRRSHGAADSVLGSGDVQLDMM 137

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R+   +G+   L  RE  +L  L+   G  +++ Q+ + IYG  DE V  N V+  I  
Sbjct: 138 TREVLYKGQREQLTAREYALLYALLERPGAILSREQLENRIYGWGDE-VSSNAVDVLIHG 196

Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220
           +R+KL N    D + + R LG+ +
Sbjct: 197 MRRKLDN----DVIRNVRGLGWRV 216


>gi|288905481|ref|YP_003430703.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|306831564|ref|ZP_07464722.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|288732207|emb|CBI13772.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304426349|gb|EFM29463.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 226

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 74/145 (51%), Gaps = 5/145 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +  I +  +Q  +I ++    +   +   D+G DD + KP   +E+LAR+ ++ RR+   
Sbjct: 63  VQEIRQTGNQSHIIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRRVDTN 122

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
            ++N    G +   + G    V      L  +E ++LE+ M N GK+++  QIF+ ++  
Sbjct: 123 FTSNILTVGTV-TLNVGEQELVSQNTIRLAGKESKMLEFFMLNAGKKLSTDQIFNHVWAN 181

Query: 180 -LFDEAVEENVVESHISKLRKKLRN 203
              D  ++   V  ++S LR+KL++
Sbjct: 182 DKDDPEIDNGYVFIYVSYLRQKLKS 206


>gi|239982791|ref|ZP_04705315.1| turgor pressure regulator [Streptomyces albus J1074]
 gi|291454638|ref|ZP_06594028.1| response regulator [Streptomyces albus J1074]
 gi|291357587|gb|EFE84489.1| response regulator [Streptomyces albus J1074]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 24/164 (14%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R+ S+VP++ +S   S    +   D+G DD V KP    E+LAR+ A  RR + +  
Sbjct: 65  RGLRSWSRVPVLVLSARQSSDEKVQALDAGADDYVTKPFGMDELLARLRAAVRRTEPAAP 124

Query: 125 RAETGPI------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             E   +            RV   GRD         L   E  +LE L+ N G+ V++ Q
Sbjct: 125 DEEAEVVDAADFTVDLAAKRVHRQGRD-------VRLTPTEWHLLEVLVRNTGRLVSQKQ 177

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +   ++G      E N +  ++++LR+KL      DP   + F+
Sbjct: 178 LLQEVWG-PSYGTESNYLRVYMAQLRRKLET----DPAHPRHFI 216


>gi|240145280|ref|ZP_04743881.1| DNA-binding response regulator RegX3 [Roseburia intestinalis L1-82]
 gi|253578070|ref|ZP_04855342.1| DNA-binding response regulator [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850388|gb|EES78346.1| DNA-binding response regulator [Ruminococcus sp. 5_1_39BFAA]
 gi|257202635|gb|EEV00920.1| DNA-binding response regulator RegX3 [Roseburia intestinalis L1-82]
          Length = 233

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 13/175 (7%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++ E  R  +  SQ+P+I ++      + +   D G DD + KP    E+ +R+ A
Sbjct: 60  GTGFEICEKVR--KNGSQIPIIFLTASDEEVSIIRGLDCGGDDYITKPFKLGELCSRIRA 117

Query: 115 IYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + RR  +S        E G I++   G    ++G++  L   E R++  L+ N  + + +
Sbjct: 118 LLRRAGLSTQGTGAVMECGDIKIDLLGSRVLLKGKILELTAAEYRLICLLVKNANRIITR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL---GYSIDW 222
             I   ++    + V+ N +  ++ +LR+K+      DP   +  L   G+   W
Sbjct: 178 DIILDELWDSTGDYVDNNTLSVYVRRLREKIET----DPSHPEHLLTVRGFGYQW 228


>gi|215483396|ref|YP_002325609.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|213988889|gb|ACJ59188.1| response regulator [Acinetobacter baumannii AB307-0294]
          Length = 247

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR + +N   
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137

Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|167760996|ref|ZP_02433123.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
 gi|167661375|gb|EDS05505.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 95/196 (48%), Gaps = 18/196 (9%)

Query: 41  SAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLD 89
           +A   +  + AF  G  + +L    LP++        IR  S++P+I IS   S +  L 
Sbjct: 30  AAENGIDGVTAFRKGNPDLILLDIMLPKMDGYTVCEMIRQESEIPVIMISALGSEEDQLK 89

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGE 145
            F+  +DD + KPI    ++ ++ A+ RR +              + +  D    +V  +
Sbjct: 90  GFELQIDDYIPKPISLPIMMKKIEAVIRRYENKGLEKKEELHYKEMTLMVDNYRVKVGKK 149

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L ++E  IL+ L+ N+G+ +++    + ++  ++   EE  V++HI  LRKKL +  
Sbjct: 150 DINLTQKEYEILKELLENQGRVISRDSFLNRLWR-YEYVGEERAVDNHIKNLRKKLGDAG 208

Query: 206 GFDPVDSKRFLGYSID 221
            +  +++ R +GY ++
Sbjct: 209 NY--IETVRGVGYRVE 222


>gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
 gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR  ++ +P+I IS   S    +   ++G DD + KP   +E++AR+ A++RR 
Sbjct: 61  LEICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        G I+      DP      + G+   L  RE  +L +   + G+  ++  + 
Sbjct: 121 QAMGQAQTAGHIQAHGLTLDPLARTVRLHGQDVDLTPREFELLYFFARHPGEVFSRLALL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G   E   E+ V +HI++LR K+
Sbjct: 181 EQVWGYQHEGY-EHTVNTHINRLRIKI 206


>gi|169795908|ref|YP_001713701.1| two-component response regulator [Acinetobacter baumannii AYE]
 gi|213157394|ref|YP_002319439.1| AdeR [Acinetobacter baumannii AB0057]
 gi|301344928|ref|ZP_07225669.1| AdeR [Acinetobacter baumannii AB056]
 gi|301509916|ref|ZP_07235153.1| AdeR [Acinetobacter baumannii AB058]
 gi|301595364|ref|ZP_07240372.1| AdeR [Acinetobacter baumannii AB059]
 gi|332854443|ref|ZP_08435375.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332868449|ref|ZP_08438162.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|88758852|emb|CAJ77842.1| AdeR [Acinetobacter baumannii AYE]
 gi|169148835|emb|CAM86704.1| two-component response regulator [Acinetobacter baumannii AYE]
 gi|193077374|gb|ABO12180.2| AdeR [Acinetobacter baumannii ATCC 17978]
 gi|213056554|gb|ACJ41456.1| AdeR [Acinetobacter baumannii AB0057]
 gi|306485917|gb|ADM92605.1| AdeR [Acinetobacter baumannii]
 gi|332728019|gb|EGJ59411.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332733374|gb|EGJ64560.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 247

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR + +N   
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137

Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|237716432|ref|ZP_04546913.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262408032|ref|ZP_06084580.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294643327|ref|ZP_06721151.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CC 2a]
 gi|294806113|ref|ZP_06764966.1| putative transcriptional activator protein Irlr [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444079|gb|EEO49870.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262354840|gb|EEZ03932.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292641333|gb|EFF59527.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CC 2a]
 gi|294446701|gb|EFG15315.1| putative transcriptional activator protein Irlr [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 228

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR  +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR-- 119

Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V+ N  E     V++D R      D E  G    L  +E  +L Y++ N  + +++ +I 
Sbjct: 120 VTGNAQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIA 179

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++   FD     N ++ +I+ LRKK+        + +K  +G+
Sbjct: 180 EKVWNTHFDTGT--NFIDVYINYLRKKIDRDFEPKLIHTKAGMGF 222


>gi|229087002|ref|ZP_04219157.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228696312|gb|EEL49142.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTASNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++      + +F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 LVAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|218248212|ref|YP_002373583.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218168690|gb|ACK67427.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 250

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 10/148 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R++R ++  VP++ +S   S    +   + G DD + KP   RE++AR  A+ RR 
Sbjct: 85  LDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRALIRRQ 144

Query: 120 KVSNNRAETGPIRVFSD-GRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +N    + P+R F D    PE     V+GE   L  +E R+LE  M+   +  ++ Q+
Sbjct: 145 DFNN--VSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWSREQL 202

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G  D   +   V+ HI  LR+KL
Sbjct: 203 IDQVWGA-DFLGDTKTVDVHIRWLREKL 229


>gi|152986647|ref|YP_001349071.1| KDP operon transcriptional regulatory protein KdpE [Pseudomonas
           aeruginosa PA7]
 gi|150961805|gb|ABR83830.1| KDP operon transcriptional regulatory protein KdpE [Pseudomonas
           aeruginosa PA7]
          Length = 244

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S+VP+I ++        +   D+G +D V KP    E++AR+ A  R +    + +
Sbjct: 80  LRQWSRVPVIVLTVRSGEDEKVALLDAGANDYVTKPFSVEELMARIRAFLRTVATGTDDS 139

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              + G +R+    R+  V GE   L R+E  +L  L+   G+ V + QI   ++G    
Sbjct: 140 PIYDDGILRIDLAQREVAVHGEAVTLSRKEFSLLALLVRQPGRLVTQAQILREMWG---P 196

Query: 184 AVEENVVESHISKLRKKLRNKLGFD 208
             EE+    ++  L  KLR+KLG D
Sbjct: 197 THEEDT--HYLRILVGKLRHKLGDD 219


>gi|325289762|ref|YP_004265943.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965163|gb|ADY55942.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 106/228 (46%), Gaps = 21/228 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGKG 57
           +LIDD        I  F + G+  EGF+ +  ++ + +       +  ++ ++  +   G
Sbjct: 10  LLIDDEP-----NILQFLEMGLLNEGFDVMTAQDGMSAMTIVKQFQPHIAILDVMM--PG 62

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+ ++++      +I ++    +   +     G DD + KP    E+LAR+ A  R
Sbjct: 63  MDGFEVCKMLKKTENTAIIMLTAKDEVDDKVKGLTLGADDYMAKPFSFEELLARIHARVR 122

Query: 118 RLKVSNNRAET--GPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +  N   E   GP R+  D R  E+     V  L   E  +L +++ N+G  ++KT+I
Sbjct: 123 N-QFPNLLGEVVIGPFRI--DDRRKEIFYHQVVLELSPTEYELLRFMVLNQGLVLSKTKI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G +D   +EN+VE +I  LR KL +K     + + R  GY +D
Sbjct: 180 LDKVWG-YDFVGDENIVEVYIRSLRDKLNDK-EHKLIRTLRGSGYRVD 225


>gi|308176281|ref|YP_003915687.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743744|emb|CBT74716.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 246

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 41  SAREDVSAIEAFLIG-KGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           S   DV  ++  L G  G +VL   R +R H  ++P++ ++   +++  ++   +G DD 
Sbjct: 63  SLAPDVLVLDWMLPGFDGPEVL---RKVRTHFPEIPVLFLTAKDAVEDRIEGLGAGADDY 119

Query: 99  VNKPIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           V KP    E+L R+  +  R   +  + AE   G + + +D  D    G    L   E  
Sbjct: 120 VAKPFSLEEVLIRLHRLVERSGAATADSAELVVGDLVLNTDSHDVSRAGREISLTATEFD 179

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +L YLM N  + V+K+QI   ++  +D   + N+VE +IS LRKK+
Sbjct: 180 LLSYLMNNARRVVSKSQILDNVWH-YDFDGQANIVELYISYLRKKI 224


>gi|294635401|ref|ZP_06713893.1| DNA-binding response regulator BaeS [Edwardsiella tarda ATCC 23685]
 gi|291091224|gb|EFE23785.1| DNA-binding response regulator BaeS [Edwardsiella tarda ATCC 23685]
          Length = 243

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 67  LMLPGVDGLTLCREIRRSSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 126

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I RR  +        P+ +         + +   L + E R+L+ L    G  +++ Q
Sbjct: 127 KTILRRCGLQEGGEVRTPLLIDERHFQARYRQQTLDLTQAEFRLLKTLATQPGCVLSREQ 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + + +Y  +   V +  V+SHI  LR+KL
Sbjct: 187 LLNHLYDDY-RVVTDRTVDSHIKNLRRKL 214


>gi|255526521|ref|ZP_05393430.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187630|ref|ZP_06856024.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509771|gb|EET86102.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047587|gb|EFG87027.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 230

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 5/145 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S  P+I I+        +   +SG DD + KP    E++AR+ AI RR+ 
Sbjct: 62  MEVCKSIRFKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAILRRIT 121

Query: 121 VSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              N   T     P+ +  +    ++ G    L ++E  +L  L ++  K V++  +  +
Sbjct: 122 PPENIKLTTIKYPPLELDIENYSIKLNGSNINLTKKEIEVLWMLSSSPNKIVSRDTLLDS 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           I+G+ D   +   V++HI ++R KL
Sbjct: 182 IWGI-DYFGDPRTVDTHIKRIRAKL 205


>gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
 gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
          Length = 228

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 29/182 (15%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++ +  R      ++P+I ++        +   D G DD + KP   RE+++R+ +
Sbjct: 58  GSGYEICKRMREDSRLKEIPVIFLTACDDEVNIVMGLDLGADDYITKPFRVRELISRMNS 117

Query: 115 IYRRLKVSNNRAETG-----------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
           + RR      +AET              RVF + +      EVF L   E R+L  L  +
Sbjct: 118 VLRR--AGKKQAETTINYQDLSINTIAARVFKNNQ------EVF-LTGMEYRLLLILATH 168

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           R + + + Q+F AI+ L  E V +N +  +I +LR+KL +    DP     + + R LGY
Sbjct: 169 RNQVMTRDQLFEAIWDLGGEYVNDNTLTVYIKRLREKLED----DPAHPQLIRTIRGLGY 224

Query: 219 SI 220
            +
Sbjct: 225 KL 226


>gi|329769264|ref|ZP_08260681.1| hypothetical protein HMPREF0433_00445 [Gemella sanguinis M325]
 gi|328839258|gb|EGF88841.1| hypothetical protein HMPREF0433_00445 [Gemella sanguinis M325]
          Length = 222

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS        +   + G DD + KP     + A++ A+ RR+   N+  
Sbjct: 67  IRKISKVPIIFISSASDDMNIVMAMNIGADDFIEKPFKLVVLKAKIEALLRRVYNFNSSN 126

Query: 127 ETGPIR--VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                +  +F   +D  + +  V  L + E +IL  L+ NR K V++  I +A++   D 
Sbjct: 127 SLIVYKEVIFDINKDEIKYKDNVATLTKNESKILTILLENREKIVSREDIIAALWQ-SDN 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++EN +  ++++LR KL++    D + +K+  GY +
Sbjct: 186 FIDENTLSVNVNRLRSKLKDIGIADFIITKKGKGYMV 222


>gi|323143646|ref|ZP_08078320.1| putative response regulator ArlR [Succinatimonas hippei YIT 12066]
 gi|322416579|gb|EFY07239.1| putative response regulator ArlR [Succinatimonas hippei YIT 12066]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +L   R  R H+   +I +S   SL   +   + G DD + KP H  E+  R+ A
Sbjct: 57  GNGLDILRDIR--RRHNPAGVIIVSAKDSLDDKVKGLEIGADDYLPKPFHLAELSMRIYA 114

Query: 115 IYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           I RR    SNN   +  I +   G+  ++  +   L R E  +L + ++N+ + V+K  I
Sbjct: 115 IIRRKAFASNNTLYSNNIEIDLLGKTVKINDQSILLTRTEYELLLFFISNKNRVVSKASI 174

Query: 174 FSAIYGLFDEAVE-ENVVESHISKLRKKL 201
              I G   + ++  + + SHI  L+ KL
Sbjct: 175 AEHISGEMSDLLDNHDFIYSHIKNLKAKL 203


>gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
 gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
          Length = 240

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+  A    P++ ++    ++  +     G DD V KP    E++AR+ AI RR   S  
Sbjct: 78  RLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMGSEE 137

Query: 125 R---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  D  +    G    L   E ++L YL+ N G+ V+K QI   ++  +
Sbjct: 138 DDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHVWE-Y 196

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           D   E  +VES+IS LR+KL       + + +KR +GY
Sbjct: 197 DWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGY 234


>gi|291561767|emb|CBL40567.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 12/209 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DD+ +V+   I L G+    ++ ++  E  E L+   + +V+ +   ++  G   
Sbjct: 4   ILVCDDDKQIVEAINIYLTGEGFNVIKAYDGYEALELLE---KNEVNLMIVDVMMPGLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +     +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 61  IRTTLKVRETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 120

Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              N  + G  +V+  G        ++  V GE   L   E  IL  L+ N GK  +  Q
Sbjct: 121 QLGNLNQQGSSQVYKCGGLMINDENKEVTVDGEPIKLTPIEYNILLLLVKNAGKVFSIDQ 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I+  I+   D    +N V  HI  +R+K+
Sbjct: 181 IYEKIWN-EDAIGADNTVAVHIRHIREKI 208


>gi|317048976|ref|YP_004116624.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316950593|gb|ADU70068.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 223

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 17/168 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R   QVP++ ++   +L   +   ++G DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LARLRRRGQQVPVLLLTARSALAQRVQGLNAGADDYLTKPFELDELEARLRALLRRGHGQ 122

Query: 123 NNRAET-GPIRVFSDG-----RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +++  G + + + G     R P        L  RE  +L  LM   G  V++  ++  
Sbjct: 123 MPQSQVIGQLELDNQGCFLLNRKP------LRLTPREASVLTTLMRRPGHPVSRQHLYEQ 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
            + L DEA +E  +E ++ ++RKKL    G D  + + R LGYS++  
Sbjct: 177 TFTLCDEASQET-IELYVHRVRKKLA---GSDVAIVTLRGLGYSLECQ 220


>gi|258655134|ref|YP_003204290.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558359|gb|ACV81301.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 10/160 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP+I +S        +   D+G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  VEVIRRLRVWTAVPIIVLSGRVGSSDKVLALDAGADDYVTKPFSLDELFARIRAVTRRST 120

Query: 121 VSNNRAE--TGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++  AE   G  R+  +D      +GE   L R E ++LE L+ + GK + +  +   +
Sbjct: 121 GADASAEVVVGRFRIDLADRTIAADEGEPPHLTRTEWQLLEILLTHPGKLITQRSLLQQV 180

Query: 178 YGLFDEAVEENVVESH-ISKLRKKLRNKLGFDPVDSKRFL 216
           +G    A E+   E+H I +    LR KL  DP   +  L
Sbjct: 181 WG---PAYEQ---ETHYIRQYMAHLRRKLEADPARPRHLL 214


>gi|170023656|ref|YP_001720161.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|169750190|gb|ACA67708.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%)

Query: 1   MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLI 54
           M +LI +D A +++G + +        EG+  +  E  +Q+ A     + D   ++  + 
Sbjct: 1   MKILIAEDNAHIRNGLMEVLAH-----EGYRPIAAENGVQALALYRQQQPDFIILDIMMP 55

Query: 55  G-KGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
              G KV    R IR H  Q P+I +S        +   + G DD ++KP    E+ AR+
Sbjct: 56  ELDGYKVC---REIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARI 112

Query: 113 AAIYRRL--KVSNNRAETG----PIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRG 165
             I RR   KV  +  + G     + VF +     ++GE    L  RE  IL YL  ++G
Sbjct: 113 KTIVRRCLRKVPESAEDAGFPFGDLMVFPN-ELCAIRGETRLELSLREVNILRYLYQHKG 171

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           + + +  +F A++G +D   +   ++ HISKLRK +      DPV
Sbjct: 172 RVITRDMLFDAVWG-YDHLPQSRTLDQHISKLRKTIE----LDPV 211


>gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032]
 gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032]
          Length = 242

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 15/145 (10%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-------------NRAETGPIRVFSDG 137
            + G DD + KP   RE+ ARV AI RR + S              ++ + G +R+  + 
Sbjct: 93  LELGADDYMTKPFSPREVGARVKAILRRAQQSQPAPTQEEKEEIIADQIKIGELRILPEH 152

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
            +   Q E   L  +E  +L YL  ++G+ + +  + SA++  +D A +  +V+ HIS L
Sbjct: 153 YEVYFQEERLELTPKEFELLLYLAKHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHL 211

Query: 198 RKKL-RNKLGFDPVDSKRFLGYSID 221
           R K+ +N      + + R LGY ++
Sbjct: 212 RDKIEKNTKKPTYIKTIRGLGYKLE 236


>gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 232

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 8/150 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +++  + P+I ++        +     G DD V KP   RE++ARV A+ RR++
Sbjct: 61  LEVCRRLQSDRRTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVLRRVQ 120

Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +         E G +RV    RD +V G+   L  RE  +L +L  +R +   + Q+
Sbjct: 121 PQPDAPPPDERPIELGALRVDPRTRDVQVAGKSISLTAREFDLLYFLARHRERVFTRDQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              ++G +  + + + V  HI +LR+K+ +
Sbjct: 181 MELVWG-YTFSADTSTVTVHIRRLREKIED 209


>gi|90418941|ref|ZP_01226852.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337021|gb|EAS50726.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 247

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 6/166 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P++ ++        +     G DD V KP    E++ARV A+ R
Sbjct: 62  VELCRRLRQREETERLPILMLTARGEESERVRGLSVGADDYVVKPFSTPELIARVRAMLR 121

Query: 118 RLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K     ++   G I +  +       G    L   E +++E+ M + G+  ++ Q+  
Sbjct: 122 RSKPEKISSQLVAGDIDLDRETHRVRRAGRELKLGPTEFKLMEFFMQSPGRVFSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  V+E  V+ H+ +LRK +      DP+ + R  GY++D
Sbjct: 182 GVWG-RDIYVDERTVDVHVGRLRKAINRGRERDPIRTVRGAGYALD 226


>gi|77460418|ref|YP_349925.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384421|gb|ABA75934.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 242

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 16/165 (9%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +RA S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 64  LMLPGEDGLSLCRWLRAESDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 123

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V ++R+E      F + R   V        G V PL   E R+L ++   R 
Sbjct: 124 QTILRR--VRDDRSEQRANIRFDNWRLNSVLRQLIADDGLVVPLSNAEFRLL-WVFIERP 180

Query: 166 KRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +RV ++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 181 RRVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 220


>gi|299069814|emb|CBJ41094.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CMR15]
          Length = 226

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 17/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++I+D A V D     F   G+  EG+  L      E LQ +   + + +   L+  G 
Sbjct: 3   ILVIEDDARVSD-----FLSRGLRAEGYRVLLARTGPEGLQLARGGEPALLLLDLMLPGM 57

Query: 59  KVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LEL + +RA  + VP++ ++    +   +     G DD + KP    E+LAR+ A+ R
Sbjct: 58  SGLELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLR 117

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R +    R +   ++V     D E       G+   L  +E   LE LM+  G+  ++ +
Sbjct: 118 RGR--EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRER 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I S ++G  ++ +  N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 176 ILSNVWGANEDPL-TNIVDVYVRRLRSKIDEGQPVPLLKTVRGLGYRLD 223


>gi|269791708|ref|YP_003316612.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099343|gb|ACZ18330.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 228

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 15/168 (8%)

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IR   +   VP+I ++     +  +   ++G DD V KP    E++ARV A  RR
Sbjct: 63  EVCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHLRR 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQ 172
               ++  + G +++       E QG+V        L   E R+LE LM+ RG+ V+K +
Sbjct: 123 ----SDSPQGGEVQISMGNLTLEPQGDVLVDGRPLDLSPTEHRLLEVLMSGRGRLVSKEE 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   I+G      +   V+ ++ +LR+KL        + + R  GY +
Sbjct: 179 ILGKIWGHV--GSDSRTVDVNVFRLRRKLEEAGARVTIKTVRGRGYRV 224


>gi|256394226|ref|YP_003115790.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256360452|gb|ACU73949.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 242

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 2/138 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
           R+ R    VP++ +S    +   +    +G DD V KP    E+  RV A+ RR + V +
Sbjct: 72  RLRRQGDDVPVLMLSALDDVADRIAGLAAGADDYVVKPFSTAELELRVRALLRRGRPVPH 131

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  I + +D R     G    L RRE  +LE L+ N G  + + Q+   ++G +D 
Sbjct: 132 GVVAACGIVMDTDARTVTAAGCPLELTRREFDVLEVLVRNAGAVLTRDQLLDRVWG-YDF 190

Query: 184 AVEENVVESHISKLRKKL 201
            V  + V++ +S LR+KL
Sbjct: 191 QVRSDAVDTVVSYLRRKL 208


>gi|229153277|ref|ZP_04281455.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228629881|gb|EEK86532.1| DNA-binding response regulator [Bacillus cereus m1550]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKTTPIIIVTDNVSSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  GE   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQKEINFFQFKDLFVDASSNVVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202
           ++G ++  V  NVV+ +I  +RKKL+
Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLK 205


>gi|257784846|ref|YP_003180063.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473353|gb|ACV51472.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 234

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR     P I ++   S+   +   D+G DD + KP    E+LAR+    +  +
Sbjct: 61  LEVLRRIRREKNTPTIMLTARDSVMDKVAGLDAGADDYLTKPFAIEELLARIRVALKHHE 120

Query: 121 VSNNRAE---TGPIR-VFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           V +  ++     P + VF+        D R+  V      L  +E  +L  LM + G  +
Sbjct: 121 VDSTSSQIPSNVPTKNVFTIKGVSLDVDRREVCVNNNSIELTTKEFEVLRMLMEHAGVVL 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +I S   G ++ A E N V+ HI+ LR K+ ++     + + R +GY I
Sbjct: 181 SRERIASEALG-YEFAGETNNVDVHIAHLRAKIDDQYNIKLITTVRGVGYVI 231


>gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 245

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 20/202 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  +   DG           EE LQ    E    I   L+      LE+ + +RA
Sbjct: 32  LEKEGYEVVVAYDG-----------EEALQKVESESPDLIVLDLMLPKIDGLEVAKQVRA 80

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126
               P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   + + A   
Sbjct: 81  KRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDATVSPANDD 140

Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G + +  D      +GE   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 141 RTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHLLQTVWG-Y 199

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D   +   V+  + +LR+K+ +
Sbjct: 200 DYFGDVRTVDVTVRRLREKIED 221


>gi|218963158|gb|ACL13308.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR + +N   
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137

Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|217958237|ref|YP_002336783.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229137451|ref|ZP_04266062.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|217067440|gb|ACJ81690.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228646009|gb|EEL02232.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N R +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 119 TNQRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDDHLKTVYGVGYRW 220


>gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 236

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 20/219 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY      DGV  E    +E         + D+  ++  L  K    +E+ R IR 
Sbjct: 24  LRKEGYDVHCAYDGV--EALQKVE-------DIQPDLILLDIMLPQKDG--MEVCREIRK 72

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR---- 125
              +P+I ++   S    +   + G DD V KP   RE+LARV A  RR +    +    
Sbjct: 73  KYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQRQEQDVKE 132

Query: 126 ---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + GP+ +  D      +GE   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 133 MSEIKIGPLTIHPDAYTVSKRGEHIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-YD 191

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 192 YFGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 230


>gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 242

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 15/142 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN-------------NRAETGPIRVFSDGRDP 140
           G DD + KP   RE+ ARV AI RR + S              ++ + G +R+  +  + 
Sbjct: 96  GADDYMTKPFSPREVGARVKAILRRAQQSQPTPTQEEKDEIIADQIKIGELRILPEHYEV 155

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
             Q E   L  +E  +L YL  ++G+ + +  + SA++  +D A +  +V+ HIS LR K
Sbjct: 156 YFQEERLELTPKEFELLLYLAKHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDK 214

Query: 201 L-RNKLGFDPVDSKRFLGYSID 221
           + +N      + + R LGY ++
Sbjct: 215 IEKNTKKPTYIKTIRGLGYKLE 236


>gi|162295952|gb|ABX83923.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR + +N   
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137

Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLVNVRGVGYRLD 238


>gi|158422753|ref|YP_001524045.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158329642|dbj|BAF87127.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 223

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  RA  ++P++ ++        +  FD+G DD V KP H  E+LAR+ A+ 
Sbjct: 59  GISVLEHWR--RAGRRMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALL 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    +++    GP+R+ +      V G    L   E R+L YLM + G+ V++ ++  
Sbjct: 117 RRASGHASSELTCGPVRLDTRSGRVSVGGSPVKLTSHEYRLLSYLMHHAGRVVSRAELVE 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   FD   + N +E  + +LRK    K+  D + + R LGY
Sbjct: 177 HLYEQDFDR--DSNTIEVFVGRLRK----KIDCDVIQTVRGLGY 214


>gi|157371792|ref|YP_001479781.1| DNA-binding transcriptional regulator BaeR [Serratia proteamaculans
           568]
 gi|157323556|gb|ABV42653.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 239

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 37  WLQSSAREDVSAIEAF--------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           WL ++  E V A+ A         L+  G   L + R +R  + +P++ ++        L
Sbjct: 37  WL-TNGSEVVPAVHAHSPALILLDLMLPGSDGLTVCRELRRFTDIPVVMVTAKIEEIDRL 95

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVF 147
              + G DD + KP   RE++ARV  I RR  +  +N  E   + +         QG++ 
Sbjct: 96  LGLEIGADDYICKPYSPREVVARVKTILRRCYRPLDNTQEETQLHIDEPRFQASYQGQML 155

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            L   E R+L+ L +  G   ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 156 DLTPAEFRLLKTLASQPGNVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKL 208


>gi|120597082|ref|YP_961656.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291504|ref|YP_001181928.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120557175|gb|ABM23102.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145563194|gb|ABP74129.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 107/223 (47%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A   D  +  F + G ++E  N       L +S + D+  ++  L    G K+
Sbjct: 3   ILLVEDDATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQLDGLKL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R     +Q P++ +S    +   +    +G DD + KP    E+L R   + +R +
Sbjct: 63  LAALRA--TGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +     G +++    R+  + G+   L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 STPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              FD     NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 DYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|26251291|ref|NP_757331.1| DNA-binding response regulator CreB [Escherichia coli CFT073]
 gi|91214116|ref|YP_544102.1| DNA-binding response regulator CreB [Escherichia coli UTI89]
 gi|110644837|ref|YP_672567.1| DNA-binding response regulator CreB [Escherichia coli 536]
 gi|117626758|ref|YP_860081.1| DNA-binding response regulator CreB [Escherichia coli APEC O1]
 gi|191173173|ref|ZP_03034705.1| transcriptional regulatory protein CreB [Escherichia coli F11]
 gi|215489711|ref|YP_002332142.1| DNA-binding response regulator CreB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218561631|ref|YP_002394544.1| DNA-binding response regulator CreB [Escherichia coli S88]
 gi|218692788|ref|YP_002401000.1| DNA-binding response regulator CreB [Escherichia coli ED1a]
 gi|227885110|ref|ZP_04002915.1| DNA-binding response regulator [Escherichia coli 83972]
 gi|237704134|ref|ZP_04534615.1| transcriptional regulatory protein CreB [Escherichia sp. 3_2_53FAA]
 gi|300939389|ref|ZP_07154056.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300980841|ref|ZP_07175222.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300983983|ref|ZP_07176834.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301048371|ref|ZP_07195400.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|306815404|ref|ZP_07449553.1| DNA-binding response regulator CreB [Escherichia coli NC101]
 gi|312966116|ref|ZP_07780342.1| transcriptional regulatory protein creB [Escherichia coli 2362-75]
 gi|331661033|ref|ZP_08361965.1| transcriptional regulatory protein CreB [Escherichia coli TA206]
 gi|26111724|gb|AAN83905.1|AE016772_83 Transcriptional Regulatory protein creB [Escherichia coli CFT073]
 gi|91075690|gb|ABE10571.1| transcriptional regulatory protein CreB [Escherichia coli UTI89]
 gi|110346429|gb|ABG72666.1| transcriptional regulatory protein CreB [Escherichia coli 536]
 gi|115515882|gb|ABJ03957.1| catabolic regulation response regulator CreB [Escherichia coli APEC
           O1]
 gi|190906558|gb|EDV66165.1| transcriptional regulatory protein CreB [Escherichia coli F11]
 gi|215267783|emb|CAS12246.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli O127:H6 str. E2348/69]
 gi|218368400|emb|CAR06220.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli S88]
 gi|218430352|emb|CAR11222.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli ED1a]
 gi|222036141|emb|CAP78886.1| Transcriptional regulatory protein creB [Escherichia coli LF82]
 gi|226902046|gb|EEH88305.1| transcriptional regulatory protein CreB [Escherichia sp. 3_2_53FAA]
 gi|227837939|gb|EEJ48405.1| DNA-binding response regulator [Escherichia coli 83972]
 gi|294493345|gb|ADE92101.1| transcriptional regulatory protein CreB [Escherichia coli IHE3034]
 gi|300299788|gb|EFJ56173.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300306817|gb|EFJ61337.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300409158|gb|EFJ92696.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300455735|gb|EFK19228.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|305851066|gb|EFM51521.1| DNA-binding response regulator CreB [Escherichia coli NC101]
 gi|307556633|gb|ADN49408.1| transcriptional regulatory protein CreB [Escherichia coli ABU
           83972]
 gi|307629570|gb|ADN73874.1| DNA-binding response regulator CreB [Escherichia coli UM146]
 gi|312289359|gb|EFR17253.1| transcriptional regulatory protein creB [Escherichia coli 2362-75]
 gi|312949030|gb|ADR29857.1| DNA-binding response regulator CreB [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315284971|gb|EFU44416.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315298370|gb|EFU57625.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320195353|gb|EFW69981.1| Two-component response regulator CreB [Escherichia coli WV_060327]
 gi|323190322|gb|EFZ75598.1| transcriptional regulatory protein creB [Escherichia coli RN587/1]
 gi|323950513|gb|EGB46391.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323955193|gb|EGB50966.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|324007720|gb|EGB76939.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324012409|gb|EGB81628.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|331052075|gb|EGI24114.1| transcriptional regulatory protein CreB [Escherichia coli TA206]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 16/226 (7%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGE-KV 60
           L++D   + D  + +        EGF+   FE  L     AR+ V  +    +G  +   
Sbjct: 8   LVEDEQGIADTLVYMLQQ-----EGFDVEVFERGLPVLDKARQQVPDVMILDVGLPDISG 62

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+
Sbjct: 63  FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFS 175
           K  +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  
Sbjct: 123 KKFSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +++    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 182 SVWEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|328949557|ref|YP_004366892.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328449881|gb|AEB10782.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 222

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 14/199 (7%)

Query: 25  SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           + +G  +LE   W   + R D+  ++  L+  G   LE+ R +R  S VP+I ++     
Sbjct: 33  ATDGRRALEL--W--RATRPDLILLD--LMVPGPDGLEITRTLRKTSDVPIIMVTARAEE 86

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPE 141
              L   + G DD V KP   RE++ARV A+ RR K    +  R   G + V  +  +  
Sbjct: 87  TDRLVGLELGADDYVTKPFSPREVVARVKAVLRRAKGRVRAPERYTVGRLEVDLEAFEAR 146

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             G+  PL   + R+L  L    G+ V + ++ +    L D   +   V++H+  LR++L
Sbjct: 147 CAGQPLPLSPAQLRLLAALAREAGRAVPRAELLAQ---LGDGDADARTVDAHVKNLRRRL 203

Query: 202 RNKLGFDPVDSKRFLGYSI 220
               G   +++ R +GY +
Sbjct: 204 -GPCGAQ-IETVRGVGYRL 220


>gi|319424670|gb|ADV52744.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 239

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 107/223 (47%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A   D  +  F + G ++E  N       L +S + D+  ++  L    G K+
Sbjct: 17  ILLVEDDATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQLDGLKL 76

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R     +Q P++ +S    +   +    +G DD + KP    E+L R   + +R +
Sbjct: 77  LAALRA--TGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 134

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +   G +++    R+  + G+   L  +E ++L+YLM +  + +++T +F A++
Sbjct: 135 STPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 194

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              FD     NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 195 DYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 235


>gi|313673530|ref|YP_004051641.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940286|gb|ADR19478.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 222

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 2/150 (1%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           KG ++L+L +     S +P+I IS   S    ++  + G DD + KP   + ++A++  +
Sbjct: 59  KGTQLLQLLKRSPKFSNIPVIIISARSSESDIVEGLELGADDYITKPFSMKVLIAKIKIL 118

Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            R+ +  + N  E   I V  +     +  +   L  +E  +L + + +  K  +++Q+ 
Sbjct: 119 LRKKQEKTENIIEYKGIIVDLEKYKVFLNNKEITLTYKEFELLVFFLKHPKKVFSRSQLL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           S I+G +D  +    V+SH+S LRKKL +K
Sbjct: 179 SNIWG-YDADIFTRTVDSHVSSLRKKLEDK 207


>gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7]
 gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050
           [Bacillus amyloliquefaciens DSM 7]
 gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens
           TA208]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 3/160 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   +R+ + +P++ ++        +  F SG DD + KP    E+ ARV A+ +R +
Sbjct: 61  FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 120

Query: 121 VSNNRAET-GPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  +  T G + +    R      G    LPRRE  +L  L     K  ++  +   I+
Sbjct: 121 ITAEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G FD   +E  V+ HI +LR++   K     + + R LGY
Sbjct: 181 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGY 219


>gi|261821426|ref|YP_003259532.1| PhoP family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261605439|gb|ACX87925.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 2/153 (1%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128
            +++P++ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR   +++     
Sbjct: 70  QAKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNSGLASQIISL 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
            P  V    R+  +      L   E  I+E L+ N GK V+K  +   +Y    E  E +
Sbjct: 130 PPFEVDLSRRELVIHSTPIKLTAFEYTIIETLIRNTGKVVSKDSLMLQLYP-DAELRESH 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  + +LRKK++     D + + R  GY  D
Sbjct: 189 TIDVLMGRLRKKIQQADAPDVITTVRGQGYRFD 221


>gi|229020065|ref|ZP_04176847.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229026294|ref|ZP_04182653.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228735010|gb|EEL85646.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228741222|gb|EEL91438.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +    K +N 
Sbjct: 66  RRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRKTTNK 125

Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +G ++ A ++  V SHI  LR KL  K  +
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|187934010|ref|YP_001886396.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722163|gb|ACD23384.1| putative lantibiotic biosynthesis regulatory protein [Clostridium
           botulinum B str. Eklund 17B]
          Length = 220

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR+    P++ ++     +  +     G DD + KP    E+ ARV A  RR +  
Sbjct: 62  LCNKIRSLVDCPILFLTAKTMEEDIVKGLSFGGDDYITKPFGISELRARVNAHLRRERRE 121

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              A     ++ + + ++     E+    + E  I EYL  N G+  +K QI+ +++G F
Sbjct: 122 KQNAFYISELKFYINSKEVYHDEELISFTKSEYNICEYLALNHGQVFSKEQIYESVFG-F 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D   +   +  HI  +R KL+ + G + +++   +GY
Sbjct: 181 DGHSDTTAIVEHIKNIRSKLKVR-GINTIETVWGIGY 216


>gi|162147307|ref|YP_001601768.1| two component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785884|emb|CAP55455.1| putative two component response regulator [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 232

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 6/131 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
              G DD + KP    E+LAR+ A+ RR + + +NR   G + +    R     G    L
Sbjct: 101 LSDGADDYIVKPYDFDELLARLDAVSRRYVALVDNRLALGEVEIDLSRRRLSRLGAEVDL 160

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             RE  ++E L    G   ++ QI  A+YGL +E +E N +E  IS++RK    K+G   
Sbjct: 161 TAREWAVIELLARRAGAICSREQIEDALYGLGEE-IESNAIEVFISRVRK----KVGAGL 215

Query: 210 VDSKRFLGYSI 220
           + + R  GY +
Sbjct: 216 IRTVRGRGYRL 226


>gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
          Length = 240

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+  A    P++ ++    ++  +     G DD V KP    E++AR+ AI RR   S  
Sbjct: 78  RLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMGSEE 137

Query: 125 R---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  D  +    G    L   E ++L YL+ N G+ V+K QI   ++  +
Sbjct: 138 DDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHVWE-Y 196

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           D   E  +VES+IS LR+KL       + + +KR +GY
Sbjct: 197 DWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGY 234


>gi|26992059|ref|NP_747484.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24987198|gb|AAN70948.1|AE016739_1 transcriptional activator CopR [Pseudomonas putida KT2440]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R++RA  + VP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EVLRMVRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   + V    R     G+   L  +E  +LE LM  RG+ + K+ I S ++
Sbjct: 121 STAAQTTMKMADLEVDLLKRRATRSGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + FD   + NV+E  I +LR K+ +      + + R +GY +D
Sbjct: 181 DMNFDS--DTNVIEVAIRRLRAKIDDDFAPKLIHTARGMGYMMD 222


>gi|291514656|emb|CBK63866.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Alistipes shahii WAL
           8301]
          Length = 223

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 9/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV---QGEVF 147
           FD G DD + KPI  + +++RV AI +R+  ++   E  P    +  R+       G+  
Sbjct: 95  FDVGADDYLTKPIKMKLLVSRVQAILKRID-ADRPPEKAPAPGLTVDRERYTVIRDGQEI 153

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            LPR+E  +L+ L ++ GK + + +I++ I+G  +  V +  ++ HI    +KLR K+G 
Sbjct: 154 TLPRKEFALLDLLHSSPGKLIPREEIYAKIWGT-EVVVGDRTIDVHI----RKLRQKIGD 208

Query: 208 DPVDSKRFLGYS 219
           + + + + +GY 
Sbjct: 209 ERIVTVKGVGYK 220


>gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 232

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R+     P++ ++    +   +   D+G DD + KP    E+LARV ++ RR 
Sbjct: 60  LEVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRA 119

Query: 120 KVSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              +  AE  P+          + +D R+    G    L R E  +L+ LM N  K +++
Sbjct: 120 SADSIAAE-APVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++I   ++G +D     N +E +I  LRKK   +     + + R +GY
Sbjct: 179 SKILEEVWG-YDFPTSGNALEVYIGYLRKKTEGEGDARLIHTVRGVGY 225


>gi|254517651|ref|ZP_05129707.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
 gi|226911400|gb|EEH96601.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
          Length = 233

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IRA S  P+I +S     +  ++  DSG DD + KP    E+LAR+    R++ 
Sbjct: 63  VDIIKKIRAWSNCPIIVVSARSEDKDKIEALDSGADDYLTKPFSVDELLARIRVAIRKMN 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIF 174
             N + E     +  D +   V G VF       L   E ++L  L  N GK +  T I 
Sbjct: 123 YDNTKKEESTEFINGDLKIDYVSGCVFVGKEETHLTPIEYKLLCLLAKNVGKVLTHTYIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             I+G+  E+ E   +   ++ LRKK+
Sbjct: 183 KEIWGVAYES-EVPSLRVFMATLRKKI 208


>gi|153007816|ref|YP_001369031.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151559704|gb|ABS13202.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 221

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D A++ DG     G  G +++  ++    E   ++       ++  L  G G  +
Sbjct: 3   ILVVEDDAILLDGLTVGLGLAGFTVDAVSNCGDAEAALAAQNYHAVVLDLMLPDGSGLDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R  R   + P++ ++    +   +   D+G DD V KP    E+ ARV A+ RR  
Sbjct: 63  LRTMR--RGRDETPVLLLTARDQVPERIAGLDAGADDYVGKPFDLHELAARVRAVARRGA 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N   E   + +        + GE   L RRE  IL  LM       +K+ +  A+YG
Sbjct: 121 GRANALLEWRGVELDPAEMSVLLHGEPVRLTRREFSILRALMERPTATFSKSSLEEALYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E VE N VE HI      LR+KLG D +++ R +GY +
Sbjct: 181 -WQEEVESNAVEVHI----HHLRSKLGSDYIETVRGVGYRL 216


>gi|15923649|ref|NP_371183.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|81854576|sp|Q932F1|GRAR_STAAM RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|14246428|dbj|BAB56821.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
          Length = 224

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 7/159 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+     
Sbjct: 64  RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  T    V    +D   +G +   L + E  ILE L+  + + V++  I +A++  
Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGDDTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DEA V +N +  ++S+LRKKL        +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVSRLRKKLSEISMDSAIETKVGKGY 220


>gi|298695354|gb|ADI98576.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 17/200 (8%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRA 69
           D  I    D  ++L+ +N    E   Q+  +  +   +  L+  G   +  L L   IR 
Sbjct: 11  DHAITHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
           H+ +P+I IS     QT +   D+G +D + KP +  E+ AR+  I R   ++ +  ET 
Sbjct: 71  HTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER---IAKSHQETN 127

Query: 130 PIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              VF++G        +   +      L   E  +LE L  ++GK +    I   IYG  
Sbjct: 128 I--VFTNGLLSIDFGSKSVVINNHEVHLTPNEFSLLELLANHKGKVLTYEMILKRIYGYV 185

Query: 182 DEAVEENVVESHISKLRKKL 201
           ++  E   +  H++ LR+KL
Sbjct: 186 NKT-EMPSLRVHMTSLRQKL 204


>gi|295425292|ref|ZP_06817995.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295065068|gb|EFG55973.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 259

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 18/155 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+K
Sbjct: 82  LEIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVK 141

Query: 121 VSNNRAETGPIRVFSDG----RDPEVQ----------GEVFPLPRRERRILEYLMANRGK 166
           +     E   + V        +D  ++          G+   L +RE  +L  L+ N+  
Sbjct: 142 IE---KEAQNVTVAKQQTVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIHNKNN 198

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            V++ ++ + I+G  +  +E NVVE ++  LR K+
Sbjct: 199 VVSRDELLNKIWG-PESNIETNVVEVYVRYLRNKI 232


>gi|251799571|ref|YP_003014302.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547197|gb|ACT04216.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 233

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 24/223 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L  +GY  L   +G            E ++  A+E V  +   ++      LE+ R +RA
Sbjct: 23  LTNEGYQVLIAGNG-----------REAMELIAKESVQLMILDVMMPEMNGLEVVRAVRA 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
              +P++ +S        +    +G DD + KP +  E++ARV ++ RR    N + +T 
Sbjct: 72  EYGIPILMLSAKAEDMDKIMGLTTGADDYMVKPFNALELIARVKSLLRRSIYLNTQLQTA 131

Query: 130 ---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     +++        V+     L   E  IL  L ++ G+  +   IF A++  
Sbjct: 132 QDQDIIQIHSLKISKKSHTVTVEDRGINLTSTEFDILYLLASHPGQVFSAEAIFEAVWK- 190

Query: 181 FDEAVEE-NVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            D  +E  N V  HISKLR KL ++L G   + +   +GY I+
Sbjct: 191 -DRFLESNNTVMVHISKLRDKLESELGGVKLIQTVWGVGYKIE 232


>gi|84515095|ref|ZP_01002458.1| Two component Transcriptional regulator, Winged helix family
           [Loktanella vestfoldensis SKA53]
 gi|84511254|gb|EAQ07708.1| Two component Transcriptional regulator, Winged helix family
           [Loktanella vestfoldensis SKA53]
          Length = 226

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 2/156 (1%)

Query: 47  SAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106
           + I   ++   + +  L +I R    +P++ I+    +   +   D G DD + KP   R
Sbjct: 47  AVILDLMLPAADGIAILRQIRRQQRDLPVLVITARAEIDDKVSLLDLGADDYLVKPFDMR 106

Query: 107 EILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           E+ AR+ A+ RR +    +  + G + +    R     G++  L RRE  +LE LM   G
Sbjct: 107 EMEARLRALVRRPVGQFTSVLQLGDLELDPASRIVRQAGQLIDLGRREFGLLEALMTQAG 166

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + V + ++ S +  L D+   EN +E  +S+LR+K+
Sbjct: 167 RVVTRERLMSRLSHL-DDGGSENALELLVSRLRRKI 201


>gi|30264882|ref|NP_847259.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530368|ref|YP_021717.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187698|ref|YP_030951.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65322181|ref|ZP_00395140.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869682|ref|ZP_02214340.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167633982|ref|ZP_02392305.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638026|ref|ZP_02396304.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685995|ref|ZP_02877218.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705430|ref|ZP_02895894.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651313|ref|ZP_02934144.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567181|ref|ZP_03020096.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196032754|ref|ZP_03100167.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218906044|ref|YP_002453878.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227817609|ref|YP_002817618.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917471|ref|ZP_04081020.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929866|ref|ZP_04092881.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229604412|ref|YP_002869087.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687622|ref|ZP_05151478.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725188|ref|ZP_05186971.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736926|ref|ZP_05194632.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741961|ref|ZP_05199648.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754441|ref|ZP_05206476.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757274|ref|ZP_05209301.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259557|gb|AAP28745.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505516|gb|AAT34192.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181625|gb|AAT57001.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714511|gb|EDR20030.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513843|gb|EDR89211.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530783|gb|EDR93485.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129555|gb|EDS98418.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670459|gb|EDT21199.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083139|gb|EDT68201.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561685|gb|EDV15655.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994183|gb|EDX58138.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218538505|gb|ACK90903.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227006263|gb|ACP16006.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228829782|gb|EEM75404.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842143|gb|EEM87242.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268820|gb|ACQ50457.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+  
Sbjct: 66  RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVTKQ 125

Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N G  + + Q+ S I
Sbjct: 126 LLENEDDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNPGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +G ++ A ++  V SHI  LR KL  K  +
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
 gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 121 V------SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +       ++  +T P++     +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 IVSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213


>gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 15/164 (9%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI+R     P++ ++        +   + G DD V KP   RE++ARV A  RR  +SN 
Sbjct: 65  RILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGISNG 124

Query: 125 RAETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +  + V S   D      E  G+   L  RE  +L++L+ANRG   ++  +   ++G
Sbjct: 125 ETMSNVLSVNSLNIDLSKYRVEKNGKPIELTSREFDLLKFLVANRGLIFSREMLLEKVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            ++   +   V+  I +LR+K+ +    DP     + +KR +GY
Sbjct: 185 -YEYFGDVRTVDVTIRRLREKIED----DPANPRYIHTKRGVGY 223


>gi|271963089|ref|YP_003337285.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506264|gb|ACZ84542.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 241

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ R ++A   VP++ ++        L     G DD + KP   RE++ARV A+ RR  
Sbjct: 78  LEVCRRMQAARPVPVLMLTALGEETDLLVGLGVGADDYMTKPFSMRELVARVHALLRRVE 137

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L V++     G + + +  R   V+G    L R E  +L  L    G+   + ++ 
Sbjct: 138 RASQLAVADPVIRAGDVEIDTAERRVYVRGAEAQLTRTEFDLLCRLAERPGQVFERERLL 197

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + I+G F EA     V+SH+    + LR KLG   V +   +GY++
Sbjct: 198 NDIWG-FSEAAATRTVDSHV----RALRRKLGPGVVRTVHGVGYAL 238


>gi|331083722|ref|ZP_08332833.1| hypothetical protein HMPREF0992_01757 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403933|gb|EGG83485.1| hypothetical protein HMPREF0992_01757 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 223

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 19/170 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + ++  +  P+I ++    ++  +     G DD + KP H   +LAR+    +R   
Sbjct: 62  EICKQLKEKNLCPVIILTSRTQIEDEIHGLKLGADDFLTKPYHKGRLLARIENTLQRFSG 121

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               LK S    +     ++++            LP +E +ILE L+ + G+ V+K  +F
Sbjct: 122 FEGILKGSGFYLDKHTYTLYTENYSK-------VLPEKEGKILEVLLEHSGEIVSKEDLF 174

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
             ++G     V+EN+++ ++++LRK L N LG  + V + R  GY   WN
Sbjct: 175 LMVWGT-QVYVDENILQVNMTRLRKTL-NTLGLKNMVQTVRGRGYL--WN 220


>gi|301024924|ref|ZP_07188536.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300396299|gb|EFJ79837.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQICWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRSMGYSL 226


>gi|301056320|ref|YP_003794531.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378489|gb|ADK07393.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+  
Sbjct: 66  RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVTKQ 125

Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N G  + + Q+ S I
Sbjct: 126 LLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNPGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +G ++ A ++  V SHI  LR KL  K  +
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|257482878|ref|ZP_05636919.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 142

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 12/135 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146
            D+G DD + KP    E+ ARV A+ RR   S  RA    E   I +    +    QG  
Sbjct: 13  LDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQPLLEHAGISLDPASQQVSFQGSE 69

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            P+   E ++L  LM   GK V + ++ + +YG  D+ VE N +E  I  LRKKL  +L 
Sbjct: 70  VPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYGWQDK-VESNTLEVLIHNLRKKLSTEL- 127

Query: 207 FDPVDSKRFLGYSID 221
              + + R +GY ++
Sbjct: 128 ---IRTVRGVGYLLE 139


>gi|229822256|ref|YP_002883782.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229568169|gb|ACQ82020.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 232

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 5/147 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+   IR  SQVP+I +S        +D  D+G DD V KP    E+LAR+ A  RR  
Sbjct: 67  LEVIEGIRGWSQVPIIVLSARQLGDDKVDALDAGADDYVTKPFAMPELLARLRAAVRRSA 126

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     E     G + +    R+    GE   L   E  +LE L+ +RG+ V +  +   
Sbjct: 127 LVGEPDEPVVSAGDLEIDLARREVRRSGEPVRLSPTEWALLEQLVQHRGRVVGREHLLRE 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           ++G      E + +  ++++LR+KL +
Sbjct: 187 VWG-PTATREGHYLRVYVAQLRRKLED 212


>gi|228983852|ref|ZP_04144047.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775901|gb|EEM24272.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 8/152 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 135

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N R +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 136 TNQRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           L +   E+  V+SHI  LR KLR K+ F P+D
Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PID 224


>gi|242309377|ref|ZP_04808532.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489]
 gi|239523948|gb|EEQ63814.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489]
          Length = 221

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 19/164 (11%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I ++  ++P I I+   S++     F SG DD + KP    E+L R+ A+ +R    
Sbjct: 65  LKSIHQSGRRIPAIFITALNSIKDLEIGFKSGCDDYLRKPFELSELLLRIEALLKR---- 120

Query: 123 NNRAETGPIRVFSDGRDPE-------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +NR +   I  F +G   +       ++G+V  L  +ER +L+ L+ N    V   +I+S
Sbjct: 121 SNRMQ---IYDFGNGYSFDCGEGILYLEGKVCKLSAKERELLKILLVNENHFVPLEEIYS 177

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           A++G ++E   E  +  +I    K LR  +G D + ++R  GY 
Sbjct: 178 ALWG-YEEEPSELSLRVYI----KDLRQIVGKDNILTRRGEGYC 216


>gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 233

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 3/158 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+  A    P++ ++     +  +     G DD V KP    EI+AR+ AI RR   ++ 
Sbjct: 72  RLRGAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTMQADE 131

Query: 125 RA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            A    G + +  D  +  V      L   E ++L YLM N  + ++K QI   ++  +D
Sbjct: 132 DAVIRAGELTMDQDTHEVFVGDTPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE-YD 190

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +  +VES+IS LR+K+        + +KR  GY +
Sbjct: 191 FNGDAGIVESYISYLRRKVDAHSSEALIQTKRGFGYML 228


>gi|52080824|ref|YP_079615.1| two-component response regulator YclJ [Bacillus licheniformis ATCC
           14580]
 gi|52786195|ref|YP_092024.1| hypothetical protein BLi02455 [Bacillus licheniformis ATCC 14580]
 gi|319645218|ref|ZP_07999451.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2]
 gi|52004035|gb|AAU23977.1| two-component response regulator YclJ [Bacillus licheniformis ATCC
           14580]
 gi|52348697|gb|AAU41331.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317393027|gb|EFV73821.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2]
          Length = 233

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +     +P++ I+    +   +   + G DD + KP   RE++AR+  I RRL+
Sbjct: 63  LDICKKVTESCNIPILMITAKSDITDKILGLEFGADDYITKPFDLREVVARIRTILRRLE 122

Query: 121 VSN--NRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            ++  N  ET          I +    R  +  G    L  +E  +L  L+ +RGK   +
Sbjct: 123 QAHHVNERETEKVDEIRFKNIVIVPGERLVKKDGAAVELTPKEYDLLMTLVDHRGKVFTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +++   I+G +D   +   V++HI +LRKKL
Sbjct: 183 SELLEFIWG-YDFFGDTRTVDTHIQRLRKKL 212


>gi|56750113|ref|YP_170814.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|56685072|dbj|BAD78294.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
          Length = 218

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I ++    +   +   + G DD V KP   +E+ ARV ++ RR++ S    
Sbjct: 45  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELKARVRSVLRRVEKSGANG 104

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   IR+ ++ R      E   L   E  +LE L++  G+  ++ +I   ++G
Sbjct: 105 IPSSGVIQINSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAEILQEVWG 164

Query: 180 LFDE-AVEENVVESHISKLRKKLRNKLG 206
              E  V+  VV+ HIS+LR KL +  G
Sbjct: 165 YTPERHVDTRVVDVHISRLRAKLEDDPG 192


>gi|328956405|ref|YP_004373791.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328672729|gb|AEB28775.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 12/211 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F       E F + + EE L+         I   L+   +  L
Sbjct: 4   ILVVDDEKPISD--IVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R +  +P+I ++   S    +   + G DD V KP  +RE+ ARV A  RR   
Sbjct: 62  EVCREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELTARVKANLRRHDN 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  ++  N  E G + +  D      +G    L  RE  +L YL  + G+ + +  
Sbjct: 122 AKTPVVEEIETNDIEVGALTIHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 211


>gi|322389092|ref|ZP_08062657.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321144228|gb|EFX39641.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 224

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 15/159 (9%)

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +R H  + P++ ++   SL+  +   D+G DD + KP    E+LAR+  + RR    NNR
Sbjct: 66  LRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRR----NNR 121

Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +  F D       +  + +G +  L  +E  +LE L+ +    +++ QI   I+ 
Sbjct: 122 ENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            FD   E N+++  +  +RKKL N      + +KR +GY
Sbjct: 182 -FDYVGESNIIDVLVKNIRKKLGNP---SIIQTKRGMGY 216


>gi|319947435|ref|ZP_08021667.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746375|gb|EFV98636.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 224

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 15/159 (9%)

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +R H  + P++ ++   SL+  +   D+G DD + KP    E+LAR+  + RR    NNR
Sbjct: 66  LRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRR----NNR 121

Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +  F D       +  + +G +  L  +E  +LE L+ +    +++ QI   I+ 
Sbjct: 122 ENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            FD   E N+++  +  +RKKL N      + +KR +GY
Sbjct: 182 -FDYVGESNIIDVLVKNIRKKLGNP---SIIQTKRGMGY 216


>gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 16/188 (8%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGISD 80
           LE E +  +S  + V AI+ F   K + VL           ++ R IR  S+ P+I I+ 
Sbjct: 23  LEKEGYSVASTYDGVDAIKKFEDHKPDLVLLDIMLPGMDGWQVCREIRKKSEKPVIMITA 82

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN----RAETGPIRVFSD 136
                  +   + G DD + KP   +E++AR+ A+ RR   + N          + V   
Sbjct: 83  KGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLRRYSGAENDTVKEVRYDNLVVNLT 142

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
             +  V G++   P +E  +L +L +N  +   + Q+   ++G F+   +   V+ HI +
Sbjct: 143 NYELRVAGQLVDAPPKELELLYHLASNPNRVYTRDQLLDEVWG-FEYYGDSRTVDVHIKR 201

Query: 197 LRKKLRNK 204
           LR+KL  K
Sbjct: 202 LREKLEGK 209


>gi|253576274|ref|ZP_04853605.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844401|gb|EES72418.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 224

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 3/152 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A   +P++ ++    ++   + F  G DD + KP   +E+L R+ A+ RR +++N R   
Sbjct: 70  AGDNIPILMVTAAHDIKFKHNGFLVGTDDYMTKPFDEQELLFRIKALLRRAQIANERRLV 129

Query: 129 GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
               V        ++G +   LP++E  +L  L++   K   + Q+   I+G  D   ++
Sbjct: 130 VGETVLDYNALTVIRGNQQISLPQKEFYLLFKLLSYPNKIFTRLQLLEEIWGP-DTETDD 188

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + +  HI++LR K R+   F+ V + R LGY 
Sbjct: 189 HTLNVHINRLRDKFRDSPDFEIV-TVRGLGYK 219


>gi|296131358|ref|YP_003638608.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296023173|gb|ADG76409.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 237

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 14/164 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  S   +I ++       TL     G DD V KP   RE++ARV  + RR +
Sbjct: 66  VEVCRQLRTFSDCYVIMLTARAEEVDTLIGLSVGADDYVTKPFSPRELMARVGVLMRRPR 125

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +        +     G + V +D R+  V GE   L R E  +L  L A  G  +++  
Sbjct: 126 RTPGPAAPAPSAAVTIGSLTVDTDAREVHVDGEPVALTRTEFDVLAALAARPGVVLSRRA 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +  A++G      +E++V+ H+  +R+KL      D  + +RF+
Sbjct: 186 LIEAVWG-AGWVGDEHLVDVHVLHVRQKL-----GDSAEQQRFV 223


>gi|188575282|ref|YP_001912211.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519734|gb|ACD57679.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 226

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        +   D+G +D V KP   +E++AR+ A+ R+   
Sbjct: 59  EMLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 118

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   E+    VF DG        R+  + GE  PL R+E  +L  L+ + G+ V + Q+
Sbjct: 119 GSTVEES----VFDDGRLHIHLGLREVTLNGEAVPLSRKEYALLALLLKHAGRVVTQPQL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYS 219
              ++G   E  + + +   + KLR+KL++          +P    RF+G +
Sbjct: 175 LRELWGPTHEE-DTHYLRILVGKLRQKLQDDAAAPHYIVTEPGVGLRFIGVT 225


>gi|209545558|ref|YP_002277787.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533235|gb|ACI53172.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 266

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI 131
            P+I I+   +     +    G DD V   I   E+LAR+ AI RR    ++   + G +
Sbjct: 74  TPVIIIARDTTPPAIAEVLSVGADDCVPASIDPTELLARLRAIVRRAGGHDSLTLQIGRL 133

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V  + R+  + G+  PL RRE  ++E L   + + ++K  +  ++Y    E     V++
Sbjct: 134 TVNVNQREVHIDGKPVPLTRREYDVVELLALRKNQALSKESVLDSLYAGQHEP-SGKVID 192

Query: 192 SHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             I K+RKK+R  LG  +P+ ++  +GY ++
Sbjct: 193 VMICKIRKKMRG-LGIEEPLTTQWGIGYRLN 222


>gi|152990660|ref|YP_001356382.1| two-component response regulator [Nitratiruptor sp. SB155-2]
 gi|151422521|dbj|BAF70025.1| two-component response regulator [Nitratiruptor sp. SB155-2]
          Length = 222

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 4/165 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  L  + +    +P + +S   S++  ++    G  D + KP   RE+L RV  I 
Sbjct: 58  GDGITLLKYMEQKQINIPCLILSVLGSVENKIEGLSLGAYDYLTKPFDIRELLIRVKNII 117

Query: 117 R-RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + R  +  N    G + +    R   V+ +   L  +E +IL+ LM NR K + K++I  
Sbjct: 118 KIRYNIQTNIVRIGNVSINLFSRKVYVKDKNIKLTPQEYKILKLLMTNRNKVIEKSEIMD 177

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    +E+   N+V+  + +LRKKL  +   D + + + +GY I
Sbjct: 178 RLGIEQNESHNSNIVDVLVYRLRKKLGKQ---DFIQNIKKIGYVI 219


>gi|39996204|ref|NP_952155.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39982969|gb|AAR34428.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298505216|gb|ADI83939.1| winged-helix phosphate transcriptional response regulator
           [Geobacter sulfurreducens KN400]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 16/216 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIR 68
           L K+GY  L      +L+G N LE    L  S   D+  ++  L G  G +V ++ +   
Sbjct: 21  LEKEGYRTL-----TALDGANGLE----LARSQPPDLILLDLMLPGMMGMEVCKILKKSE 71

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNR 125
             + +P+I ++        +  F+ G DD V KP   RE+L RV A+ RR    K     
Sbjct: 72  KTAHIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRVKAVLRRSLPDKPEGKV 131

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              GP+ + ++     V+G+   L   E ++L  L    G+  ++  +   ++G ++   
Sbjct: 132 INVGPVTIDTERHMVAVEGDDVTLTTTEFKLLLNLAERLGRVQSRDLLLKNVWG-YNYVG 190

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   V++HI++LR KL      + + + R  GY ++
Sbjct: 191 DTRTVDTHITRLRTKLGQ--AGELIKTVRGFGYKME 224


>gi|89098508|ref|ZP_01171391.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89086753|gb|EAR65871.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 223

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 7/161 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  SQVP++ +S        +    +G DD ++KP +  E+ ARV A+ RR   S    
Sbjct: 63  VRKSSQVPILMVSAKVEDMDKIVGLMTGADDYMSKPFNPLELTARVKALLRRANYSQPEK 122

Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + GP+ +         +G    L   E  IL  L  N+G+  +  +IF +++   
Sbjct: 123 GDAVLQIGPLAIDKQKHHVLAEGNSIKLTSIEFEILYLLARNQGRVFSSEEIFESVWNEP 182

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            E   + V+  HIS LR+KL   L G   + +   +GY I+
Sbjct: 183 GEGSNKTVM-VHISNLREKLEAALPGEKIIHTVWGVGYKIE 222


>gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 221

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 8/179 (4%)

Query: 27  EGFNSLEFEEWLQS---SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYP 82
           E F  LE E+ LQ+   +   D+  ++  L G  G +V +  R  R    +P++ ++   
Sbjct: 24  ERFEVLEAEDGLQALEQAPGADLVILDLMLPGMDGWRVAQELR--RDWPDLPILMLTARG 81

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV 142
             +  +  F+ G DD V KP   RE++ARV A+ RR+ + +     GP+ +    R+  +
Sbjct: 82  EEEERVRGFELGADDYVTKPFSPREVVARVRALLRRVGLKDELV-YGPLVIRPRAREVLL 140

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +G+   L R E  +L  L  + G    + ++   ++G   E V + VV+ H++ LRKKL
Sbjct: 141 EGQPVALSRLEFDLLLTLARHPGMVFTRERLLERVWGPGFEGV-DRVVDVHVALLRKKL 198


>gi|325295330|ref|YP_004281844.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065778|gb|ADY73785.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ ++   S++  +   DSG DD + KP  + E+LAR+ A+ RR     + ++T  I
Sbjct: 72  KTPILMLTAKDSVEDKVKGLDSGADDYLTKPFSYDELLARIRALLRR----KSESKTSFI 127

Query: 132 RVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++    +D E+          G    L ++E + L  L  N+ + ++K  +  ++Y   D
Sbjct: 128 KI----KDLEIDLNKKIVKRAGNEIKLTKKEFKALTLLALNKNRVISKEFLIDSLYST-D 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V  N +E  I++LRKK+        + + +  GY I
Sbjct: 183 RFVSINAIEVLINRLRKKIDKDYPLKLIHTIKGFGYMI 220


>gi|332654966|ref|ZP_08420708.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516309|gb|EGJ45917.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 230

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 6/129 (4%)

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR---- 132
           G+S    + + ++   +G DD + KP  ++E+L R+ A+ RR + S     +  +R    
Sbjct: 80  GVSARTDIDSKVNLIRNGADDYITKPFDNQELLVRIEAVLRRFQKSTTPNNSKILRFKDL 139

Query: 133 -VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            + ++  + +++     L R E  IL+ LM++  K   K  IF +++   +   ++N + 
Sbjct: 140 SLDTEAMEAKIRNTPITLTRYEYLILQLLMSSPSKVFTKNNIFESVWN-ENFIGDDNAIN 198

Query: 192 SHISKLRKK 200
            HI  LRKK
Sbjct: 199 VHIGNLRKK 207


>gi|260554988|ref|ZP_05827209.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|260411530|gb|EEX04827.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
          Length = 247

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR + +N   
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137

Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 10/117 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK------VSNNRAET---GPIRVFSDGRDPEVQG 144
           G DD + KP   RE+LAR+ AI+RRL+      +S+  AE    G I          V+G
Sbjct: 95  GADDYLTKPFSPREVLARMKAIFRRLEPRGTADLSDQPAEMLQIGDILADLTNYQVSVKG 154

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           E   L  +E  +L Y M  +G+ + +  + + I+  FD   +  +V+ HIS LR+KL
Sbjct: 155 EKIFLTPKEFELLIYFMKRKGRVIDRDTLLNRIWN-FDFDGQSRIVDVHISHLREKL 210


>gi|223985510|ref|ZP_03635567.1| hypothetical protein HOLDEFILI_02873 [Holdemania filiformis DSM
           12042]
 gi|223962527|gb|EEF66982.1| hypothetical protein HOLDEFILI_02873 [Holdemania filiformis DSM
           12042]
          Length = 269

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 85/168 (50%), Gaps = 26/168 (15%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP++ +S +      +   + G DD + KP     ++AR+ A+ RR   + +  
Sbjct: 112 IRKLSKVPILFLSSHNENLDIIMALNQGGDDYLTKPFSMEILVARIQALLRR---AYSYE 168

Query: 127 ETGPIRVFS-------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +G +  F              DGR  E       L + E +IL+ L+ N+ K V++ +I
Sbjct: 169 PSGTLMEFQGAVFNLADASLSKDGRQCE-------LTKNEFKILQLLLENKNKVVSREKI 221

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              ++   D  V+EN +  ++++LR+K+  +LG  D +++++ LGY +
Sbjct: 222 MLKLWN-NDCFVDENTLTVNVNRLRRKME-QLGIDDCIETRKGLGYQL 267


>gi|297202947|ref|ZP_06920344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197711939|gb|EDY55973.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 246

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 15/161 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           IRA    PLI    + S  T LD      SG DD + KP   RE++AR+ A+ RR+    
Sbjct: 66  IRARGNTPLI---TFTSRDTELDRVLSLRSGADDCLVKPYGFRELIARMNAVARRVTTGG 122

Query: 124 N--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G +R+    R+  +      L R+E  IL  L +     +++  + +A++   
Sbjct: 123 GPVGVSCGALRLDPGAREARLGERSLELTRKEFDILLLLASAPETVISRRDLIAAVWA-- 180

Query: 182 DE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE A+    V++H+S LR     KLG   + + R +GY ++
Sbjct: 181 DEWAISTRTVDTHVSALRA----KLGEGWITTVRGVGYRLE 217


>gi|162295955|gb|ABX83925.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR + +N   
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137

Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|26990850|ref|NP_746275.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985860|gb|AAN69739.1|AE016610_5 transcriptional regulatory protein KdpE [Pseudomonas putida KT2440]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 14/164 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G++VL   R +R  S VP++ +S   S    +D  D G +D V KP   +E LARV A+ 
Sbjct: 63  GQQVL---RELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119

Query: 117 RRLKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R++  +      A  GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+
Sbjct: 120 RQVPQAGGSEVAASFGPLTVDFAFRRVTLDGVEVALTRKEYALLAILAGHPGRVITQQQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
              I+G        +  ++H  ++    LR KLG DP  + RF+
Sbjct: 180 LKDIWG------PTHAEDTHYLRIVVGHLRQKLGDDPT-APRFI 216


>gi|17942992|pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
           Thermotoga Maritima
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 2/148 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
             P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR   S + +   G 
Sbjct: 74  NTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGD 133

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + +  +      +   L ++E +ILEYL+ N+ + V K ++   ++  FD+ V  +V+
Sbjct: 134 LILDTATKKAYRGSKEIDLTKKEYQILEYLVXNKNRVVTKEELQEHLWS-FDDEVFSDVL 192

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            SHI  LRKK+        + + R +GY
Sbjct: 193 RSHIKNLRKKVDKGFKKKIIHTVRGIGY 220


>gi|220932997|ref|YP_002509905.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219994307|gb|ACL70910.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 226

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 85/167 (50%), Gaps = 13/167 (7%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L   R +R++++   +P+I ++        +   + G DD + KP   RE++AR+ A+ R
Sbjct: 60  LSFCRQVRSNNRFKDIPIIMLTAKGEEVDKIIGLEMGADDYITKPFSPRELVARIKAVLR 119

Query: 118 RLKVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R++ +  +++   I+     +     +    GEV  L  +E  +L +L+ N GK + +  
Sbjct: 120 RVQKNEEKSDNELIKKADFELDVSSHEARKGGEVLNLTPKEFDLLRHLLVNSGKVLTRDI 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +   ++G ++ A +   V+ HI    ++LR K+G + + + R +GY 
Sbjct: 180 LLEKVWG-YEYAGDTRTVDVHI----RRLRRKIGDNYIVTVRGVGYK 221


>gi|84684965|ref|ZP_01012865.1| Phosphate regulon transcriptional regulator, PhoR [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667300|gb|EAQ13770.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacterales
           bacterium HTCC2654]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  + +P+I +S        +   ++G DD + KP   +E++AR+    RR + ++   +
Sbjct: 75  RETTDIPVIMLSARSDEMDRVRGLETGADDYMVKPFSVQELMARIRTQLRRTRPASVGQQ 134

Query: 128 TGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                +  DG    V   G+   L   E R+L   M   G+  ++ Q+   ++G  D  V
Sbjct: 135 LAYEDIILDGETHRVTRGGDPIKLGPTEFRLLTTFMEKPGRVWSREQLLDRVWG-RDVYV 193

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   V+ H+ +LRK L    G DP+ + R  GY++
Sbjct: 194 DTRTVDVHVGRLRKALCKTGGDDPLRTVRGTGYAL 228


>gi|320531513|ref|ZP_08032466.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136270|gb|EFW28265.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 219

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 23/158 (14%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP+I ++   S+   +   + G DD + KP    E+LAR+       +V      TGP +
Sbjct: 74  VPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARI-------RVRLRPDTTGPDQ 126

Query: 133 VFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           +    RD           ++G    L  RE  + E  M + G+ +++ Q+ S+++GL FD
Sbjct: 127 MRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSSVWGLDFD 186

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                NVVE ++S     LRNKLG   V++ R +GY +
Sbjct: 187 PG--SNVVEVYVS----YLRNKLGRQRVETVRGMGYRL 218


>gi|322417641|ref|YP_004196864.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124028|gb|ADW11588.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 234

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 5/144 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ R +R  S+VP+I IS        +   DSG DD + KP    E+LAR+    RR  
Sbjct: 70  MEVIRRVREWSRVPIIVISVREREDEKVQALDSGADDYLTKPFGIGELLARIKVALRRSL 129

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      E G +RV    R   V+GE   L   E  +L  L+ + GK +  +QI   I+
Sbjct: 130 QQAPEPVFEVGELRVDLPHRRVSVRGEEVQLTPTEYELLRMLVTHAGKVLTHSQILKQIW 189

Query: 179 GL-FDEAVEENVVESHISKLRKKL 201
           G+ + E  + +V+  +IS LR K+
Sbjct: 190 GVAYLE--QPHVLRVNISNLRHKI 211


>gi|238854218|ref|ZP_04644563.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
 gi|238833154|gb|EEQ25446.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
          Length = 221

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            DSG DD + KP   +E+LAR+ +  RR  + + N  E G +   +      V      L
Sbjct: 91  LDSGADDYLTKPFSLKELLARLRSKERRDDQYTPNEVEVGDL-ALNVSEQELVSHNSIRL 149

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +E ++L YLM N GK  + + + + ++   D+A EE VV  +IS LR+KLR+
Sbjct: 150 GSKETQLLNYLMLNEGKEFSTSDLLAHVWKDEDDANEE-VVWIYISYLRQKLRS 202


>gi|224823455|ref|ZP_03696564.1| two component transcriptional regulator PhoB, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224603910|gb|EEG10084.1| two component transcriptional regulator PhoB, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETG 129
           QVP+I ++     Q  +   ++G DD + KP   RE+LAR+ A+ RR   +++++  E  
Sbjct: 76  QVPIIMLTARSDEQDKIVGLETGADDYITKPFSPRELLARIKAVLRRRAPQMTDDAVEVK 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEEN 188
            +R+          G    L   E R+L + M +  +  ++ Q+   ++G  D   VEE 
Sbjct: 136 GLRLDPATHRVSTDGNPIDLGPTEFRLLHFFMTHPERVHSRAQLLDQVWG--DHVFVEER 193

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            V+ HI +LR  L        + + R  GY
Sbjct: 194 TVDVHIRRLRSSLEATGHDGLIQTVRGTGY 223


>gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 245

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S VP++ I+        +  F  G D+ + KP    E +ARV AI RR+ +   R 
Sbjct: 84  IRAKSDVPIVIITAREGTDDIVQGFRRGADEYITKPFKVAEFVARVEAILRRVDMQKART 143

Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G + + +      V+G+   L   E  +L +L AN G+   +  +F  ++G +
Sbjct: 144 APTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFREVWG-Y 202

Query: 182 DEAVEENVVESHISKLRKKL 201
           +   E N+V+  + +LR+K+
Sbjct: 203 EYVGETNLVDVCVRRLREKV 222


>gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Frankia alni ACN14a]
 gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Frankia alni ACN14a]
          Length = 240

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 14/193 (7%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVD 96
           L   AR D+  ++  L        E+ R +RA  Q VP++ ++   + +  +     G D
Sbjct: 43  LAVQARPDLMILDVML--PDVDGFEVCRTLRAGGQSVPVVYLTARDAHRDKIAGLTYGGD 100

Query: 97  DVVNKPIHHREILARVAAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQ-----GEVF 147
           D V KP    E++ARV A+ RR                +R      DP+       GE  
Sbjct: 101 DYVTKPFAVDELVARVRAVLRRTSPPRPEPAPDPPATTLRFADVELDPDTHVVRRAGEPI 160

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E  +L Y + N  + +++ QI  A++  +D A E  VV+ ++S LR+KL  + G 
Sbjct: 161 ELSPTEFTLLRYFLTNPNRVLSRVQILDAVWS-YDFAGEPTVVDQYVSYLRRKL-GRHGP 218

Query: 208 DPVDSKRFLGYSI 220
             + ++R  GY++
Sbjct: 219 SLIHTQRGFGYAL 231


>gi|163939801|ref|YP_001644685.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229132829|ref|ZP_04261674.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|163861998|gb|ABY43057.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228650656|gb|EEL06646.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 68  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQITVSQS 127

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  V  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 128 IQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +L    + + R LGY ++
Sbjct: 187 NERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLE 222


>gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 237

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 11/210 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F       E + + + EE L+  A  D   I   L+      L
Sbjct: 7   ILVVDDEKPISD--IVKFNLTKEGYEVYTAYDGEEALEKVAEVDPDLILLDLMLPKMDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 65  EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 124

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +N+    G + +  D       G    L  RE  ++ YL  + G+ + +  +
Sbjct: 125 AAKEADDNANSELTIGDLTIHPDAYMVTKNGAAIELTHREFELMHYLAKHLGQVMTREHL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              ++G +D   +   V+  + +LR+K+ +
Sbjct: 185 LQTVWG-YDYFGDVRTVDVTVRRLREKIED 213


>gi|209526757|ref|ZP_03275279.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209492801|gb|EDZ93134.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 253

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 9/162 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S +P+I ++    +   +   + G DD + KP   +E+ AR+ AI RR K + +  
Sbjct: 79  IRAISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRRFKDNASSH 138

Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  P       +R+ +  R      ++ PL   E  +LE L    G+ V++++I   ++G
Sbjct: 139 DLSPEVIQVDTLRIDTIKRRVYKGDKLLPLTYIEFNLLELLFKRSGEAVSRSEILQQLWG 198

Query: 180 LFDEAVEE-NVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
                + +  VV+ H+++LR K+  ++   + + + R +GYS
Sbjct: 199 YTPRRIADMRVVDVHVARLRAKIETDQRNPEYILTVRGIGYS 240


>gi|196039567|ref|ZP_03106872.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196029727|gb|EDX68329.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSN- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQHETTFFQFKDLFVDASSNIVKKAGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223


>gi|163847988|ref|YP_001636032.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525870|ref|YP_002570341.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669277|gb|ABY35643.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449749|gb|ACM54015.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 15/138 (10%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-----NRAETGPIRVFSDGRDPEVQGE 145
            + G DD + KP   RE++ARV A++RR + S      +    GP+ + S+     + G 
Sbjct: 93  LEVGADDYLVKPFSPRELVARVRAMFRRPRQSGYIDEPSTMTVGPLTIDSESHTVRLDGV 152

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L   E R+L  L A  G+  ++ Q+   ++G  +   +E+V+E HI+ LRK    KL
Sbjct: 153 PINLTPLEYRLLTILAAAPGRVFSRAQLLDQVWG-NNYFGDEHVLEVHIANLRK----KL 207

Query: 206 GFDPVDSK-----RFLGY 218
           G DP   +     R +GY
Sbjct: 208 GDDPARPRFIFTVRSVGY 225


>gi|296876915|ref|ZP_06900961.1| response regulator (family protein to RR01Spn & Sth) [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432107|gb|EFH17908.1| response regulator (family protein to RR01Spn & Sth) [Streptococcus
           parasanguinis ATCC 15912]
          Length = 260

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP     +LA+V  + RR        
Sbjct: 102 IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKVQGLLRRSYEFGTDQ 161

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E     +     D   +GEV  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 162 NLLEHRGAILNLKSTDLMYEGEVIKLTKNEFQILRVLFEHTGSIVARDDMMKELWN-SDF 220

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      + +++K+ +GY +
Sbjct: 221 FIDDNTLSVNVARLRKKLEEAGLSNFIETKKGIGYGL 257


>gi|302559265|ref|ZP_07311607.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302476883|gb|EFL39976.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 29/224 (12%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL +DG+      DG+S LE F +           R D++ ++  +   G   + L R I
Sbjct: 23  ALERDGFAVTAMPDGLSGLEAFRT----------DRPDIALLDVMV--PGLDGVSLCRRI 70

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--- 124
           R  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +N    
Sbjct: 71  RDESMVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGRANGGRE 130

Query: 125 --RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              A+ G +  F +      G +    G+   L   E R+L    A  G  +++ ++   
Sbjct: 131 EPAADAGGVLAFGELEIDTGGMEVRRAGQPVALTPTEMRLLLEFSAAPGTVLSRDKLLER 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +    +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 191 VWE-YGWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 229


>gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 228

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSN 123
           IR  S VP+I ++        +     G DD + KP   RE+LAR+ A  R   R  V  
Sbjct: 71  IREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHRFTVDQ 130

Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +   T G + + ++ R   V G+   L R+E  +L   + N  K  ++ Q+   I+G  D
Sbjct: 131 SATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQIWGA-D 189

Query: 183 EAVEENVVESHISKLRKKL 201
                  V++HI  LR KL
Sbjct: 190 YIGNLRTVDTHIKTLRLKL 208


>gi|164688245|ref|ZP_02212273.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM
           16795]
 gi|164602658|gb|EDQ96123.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM
           16795]
          Length = 236

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 37/233 (15%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI--------GKGEKVLELP 64
           D  IA      V  EGFN L+  E L++ AR+ V++ E  LI        G G    E  
Sbjct: 10  DSTIAFAVKYAVEQEGFN-LDIAENLEN-ARKIVNSKEYDLILLDVMLPDGNG---YEFL 64

Query: 65  RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----- 118
           + +R H +  P+I ++        +   D G DD + KP   RE+++R+ AI RR     
Sbjct: 65  KQLREHDEDTPVIFLTACDEEVNIVMGLDIGGDDYITKPFRVRELISRINAILRRKGKSQ 124

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 LK  N    T   RVF +        E+F L   E ++L  L+ N+   +++ Q
Sbjct: 125 DSNKKILKFKNISIHTLEARVFKNNE------EIF-LTSAEYKLLLILIQNKNMVLSRAQ 177

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
           I   ++ +  + + +N +  +I +LR+K+ +     P  + + R LGY   WN
Sbjct: 178 ILEKLWDVTYDFINDNTLSVYIKRLREKIEDD-SSKPQYILTVRGLGYK--WN 227


>gi|167647848|ref|YP_001685511.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350278|gb|ABZ73013.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 223

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 11/170 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +V+E  R  R     P++ +S    +   +    +G DD + KP    E++ARV A+ 
Sbjct: 59  GVEVVETLR--REGDNTPVLFLSALGEVGDRVVGLKAGADDYLVKPYAFPELIARVEALS 116

Query: 117 RRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR +        + G + +    R    QG+   L  RE ++LE++M + G+ V +T + 
Sbjct: 117 RRRETGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLL 176

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
             ++   FD   + NV++ HIS+LR K+    GFD   + + R  GY +D
Sbjct: 177 EKVWEYHFDP--QTNVIDVHISRLRSKIDK--GFDRAMLQTVRGAGYRLD 222


>gi|56963624|ref|YP_175355.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909867|dbj|BAD64394.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 228

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 17/172 (9%)

Query: 47  SAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           S   AF  G  + VL    LP++        IRA S+VP+I +S   +    +  F  G 
Sbjct: 35  SGYHAFCEGAYQLVLIDLMLPKMDGFALCEKIRASSEVPIIVVSAKQTDFDKVQSFGLGA 94

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPR 151
           DD V KP    E+ ARV A  RR + S     +R +   + +   GR    +GE   L  
Sbjct: 95  DDYVTKPFSPLELTARVKAQIRRYERSYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTA 154

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +E  +L +L  + G+   K ++++A++    +  +   V  H+  +R KL++
Sbjct: 155 KEFELLLFLANHPGRVFTKEELYAAVWN--GDGFDSRTVTVHVKNVRHKLKD 204


>gi|300855161|ref|YP_003780145.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300435276|gb|ADK15043.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 217

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 4/149 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I ++   S+   +    +G DD + KP    E+LAR+  + R    + N      + 
Sbjct: 72  IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYNKNTNVINFEDVE 131

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +          GE   L  +E  +L +L+ N+   + + ++   I+G +D   E   +++
Sbjct: 132 INLREMTARKAGEAVELTLKEFELLVFLVQNKNVVLTREKLIEKIWG-YDYVGETRTIDN 190

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           HI KLRKKL+ K   D + +   LGY ++
Sbjct: 191 HIQKLRKKLQWK---DKIKTVFKLGYRLE 216


>gi|258541416|ref|YP_003186849.1| PhoB family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632494|dbj|BAH98469.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635551|dbj|BAI01520.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638606|dbj|BAI04568.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641660|dbj|BAI07615.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644715|dbj|BAI10663.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647770|dbj|BAI13711.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650823|dbj|BAI16757.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653814|dbj|BAI19741.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-12]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +R     + +P++ +S       T+   D+G DD + KP     + ARV A+ R
Sbjct: 63  LEVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLR 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           RL  ++       + +       E  G +  L   E R+LE+ M N GK  ++ ++    
Sbjct: 123 RLPPADKTLRFDTLVMDRVSHKVERSGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHA 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +      VE   V+ HI +LR+ L      D + + R  GY++D
Sbjct: 183 WE-RSSFVELRTVDVHIRRLRQTLNEGDEQDLIRTVRARGYALD 225


>gi|256379016|ref|YP_003102676.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255923319|gb|ACU38830.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 238

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%)

Query: 77  GISDYPSLQTT--------LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           G+ D P +  T        +   ++G DD + KP     + AR++A+ RR + +    E 
Sbjct: 79  GVCDTPVIVATARDDEAEIVRLLNAGADDYLVKPFSSEHLAARLSAVLRRTRKAA--PEP 136

Query: 129 GPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           GP+RV        D R+  + G    L R+E  +L YL A  GK V + ++ + ++ L  
Sbjct: 137 GPMRVGPHLLIDLDRREARLSGRELNLTRKEFDLLAYLAAREGKVVPRAELLANLWNLPG 196

Query: 183 EAVEENVVESHISKLRKKL 201
              ++  ++ H+S LR+KL
Sbjct: 197 RH-DDQTLDVHLSWLRRKL 214


>gi|229004154|ref|ZP_04161955.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757015|gb|EEM06259.1| Two-component response regulator [Bacillus mycoides Rock1-4]
          Length = 210

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR  
Sbjct: 49  ISVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 108

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + E    G I +    R  E+ GE   L  +E  +L +L  + G+  ++ Q+   +
Sbjct: 109 KQEQQEEELQFGSIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHNGQVFSREQLLEKV 168

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G +D A     V++H+  +R KL
Sbjct: 169 WG-YDYAGSTRTVDTHVKTMRLKL 191


>gi|165976675|ref|YP_001652268.1| phosphate regulon transcriptional regulatory protein
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165876776|gb|ABY69824.1| phosphate regulon transcriptional regulatory protein
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 213

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +Q+P++ ++   S    +   ++G DD V KP   + ++AR+ A+ RR   +N+      
Sbjct: 58  AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIEALLRRTYQNNDIINIDD 117

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +  + +    Q +   L   E ++L + M +  K  ++ Q+   ++G  D  VE+  V
Sbjct: 118 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 176

Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +S+I +LRK L    GF+  V + R  GY
Sbjct: 177 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 204


>gi|150006575|ref|YP_001301319.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254881522|ref|ZP_05254232.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294775465|ref|ZP_06740978.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|319642909|ref|ZP_07997545.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
 gi|149934999|gb|ABR41697.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254834315|gb|EET14624.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294450706|gb|EFG19193.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|317385457|gb|EFV66400.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 79/151 (52%), Gaps = 8/151 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  + +  +A + +P+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ 
Sbjct: 61  GFKMANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120

Query: 117 RRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR      K +  + +   + V    +   + G    L ++E  IL  L+ N+G+  ++ 
Sbjct: 121 RRTSPTQGKEAQEQLQYKGLLVDITKKKVSIDGIEISLTKKEFEILLLLLQNKGRVFSRE 180

Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
            I + ++   +E  V +  ++ +I++LRKK+
Sbjct: 181 DILAKVWQ--EEVYVLDRTIDVNITRLRKKI 209


>gi|315452761|ref|YP_004073031.1| putative two-component regulation system CdrRS, regulator component
           CdrR [Helicobacter felis ATCC 49179]
 gi|315131813|emb|CBY82441.1| putative two-component regulation system CdrRS, regulator component
           CdrR [Helicobacter felis ATCC 49179]
          Length = 220

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 11/157 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + + H   P I IS    + +    FD G  D + KP    E+  R+     RL ++
Sbjct: 69  LQTLRQLHITTPTIFISVLSDMTSLKKAFDLGASDYLKKPFDLEELQIRI----ERLLIT 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             +   GP   F +G    V+G+ F L  +E+++LE+ + ++   ++  QI + ++  ++
Sbjct: 125 Q-KVHIGP-DCFYEGGTLNVRGQNFFLTSKEKQLLEFFLRHQNTILSSDQIIANVWS-YE 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             V+++ + ++I    K LR  LG D + + + LGY 
Sbjct: 182 SGVDDSTLRTYI----KNLRKLLGKDIIQNVKGLGYC 214


>gi|331671522|ref|ZP_08372320.1| transcriptional regulatory protein CreB [Escherichia coli TA280]
 gi|331071367|gb|EGI42724.1| transcriptional regulatory protein CreB [Escherichia coli TA280]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQICWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|301632265|ref|XP_002945211.1| PREDICTED: phosphate regulon sensor protein phoR-like [Xenopus
           (Silurana) tropicalis]
          Length = 501

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129
           S +P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR +  ++   + G
Sbjct: 210 SALPVLILTAADSVEKRVKGLDFGADDYMAKPFSLQELEARVRALTRRGMGATSAIVKHG 269

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P+     G    + G++  L  RE  +LE L+   G+ V+K Q+   +   + E V  N 
Sbjct: 270 PLVYDQAGHVVSIDGKMVELSARELGLLEVLLQRVGRLVSKEQLVELLCE-WGEEVSYNA 328

Query: 190 VESHISKLRKKL 201
           +E ++ +LRKK+
Sbjct: 329 IEVYVHRLRKKI 340


>gi|299069565|emb|CBJ40837.1| Transcriptional regulatory protein, probable baeR protein, response
           regulator for mdtABCD and acrD [Ralstonia solanacearum
           CMR15]
          Length = 233

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 86/170 (50%), Gaps = 3/170 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G+  LE+ R +RA S +P++ ++        L   + G DD + KP   RE++AR+
Sbjct: 65  LMLPGKDGLEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARI 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I RR++ S  ++++  +++ +      ++G+   L   E R+L  L    G+ +++  
Sbjct: 125 KTILRRVQRSGAQSDS-LLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRAN 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   IY      V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 184 LLEQIYD-DHRVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 232


>gi|289168019|ref|YP_003446288.1| response regulator [Streptococcus mitis B6]
 gi|288907586|emb|CBJ22423.1| response regulator [Streptococcus mitis B6]
          Length = 235

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + IR  S VP+I +S   +    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDTEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 119 -LKVSNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            + V N  ++         G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LVSVDNQESDEKKTQPLQFGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213


>gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 228

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 13/202 (6%)

Query: 27  EGFN-SLEF--EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N ++E+   E L+ +  E+   I   L+  G     + + IR  S +P+I +S    
Sbjct: 25  EGYNVAIEYSGNEGLRRALDENYDLIILDLMLPGMDGFSVLKEIRKKSSIPVIILSAKDE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR---VFSDGRDP 140
           ++  +   D G DD + KP    E++AR+    R+    N +A T  I    +  D    
Sbjct: 85  IKDKVMGLDIGADDYLTKPFSIEELMARIRNALRK----NIKANTKKISYDGITMDLSTY 140

Query: 141 EV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
           EV   G+   L ++E  +L+YL+ N    + +  I   ++G ++   E N+V+ +I  LR
Sbjct: 141 EVLRDGQKIELTKKEFDLLKYLIINAEIVLTRENILENVWG-YNYIGETNIVDVYIRYLR 199

Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220
            K+        + + R +GYS+
Sbjct: 200 SKIDEPFSNKLIQTIRGVGYSL 221


>gi|229011292|ref|ZP_04168484.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228749948|gb|EEL99781.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 68  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQITVSQS 127

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  V  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 128 IQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +L    + + R LGY ++
Sbjct: 187 NERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLE 222


>gi|167568406|ref|ZP_02361280.1| Response regulator [Burkholderia oklahomensis C6786]
          Length = 221

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 10/170 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L R +R HS   +I ++        +   ++  DD + KPI  RE+LARV A+ RR +
Sbjct: 46  ISLARELREHSTAGIIFVTQRDGDLDRVLGLETAGDDYITKPIRLRELLARVRALLRRQR 105

Query: 121 VSNNRAETGPIRVFS----DGRDPEVQ---GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    A    +  F     D R  E+    G V PL  RE  +L  L+  RG  + +  +
Sbjct: 106 LYREIAPVDTVLTFDRWLIDLRRRELALSGGAVLPLTPREFDLLAALVMVRGTTLTREYL 165

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221
              +    + A +   V++ I++LR+K+ +  G    P+ +   +GY +D
Sbjct: 166 LEVVSK-RERATDSRTVDTLIARLRRKMSDDAGGMRCPIGTVAGIGYRLD 214


>gi|172064936|ref|YP_001815648.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997178|gb|ACB68095.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 266

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 17/191 (8%)

Query: 22  DGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGIS 79
           +G  ++ F+S L+ +++L S    D++ ++  L G  G+K+L+  R  R+ S +P+I  +
Sbjct: 31  EGYHIDAFHSGLDAQQFL-SEQWADLAILDWDLPGVSGDKLLQKIRS-RSQSIMPVIFQT 88

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD--- 136
            + +    +   D+G DD + KP   + +LAR+ A+ RR    N +      ++F D   
Sbjct: 89  VHSAESDIVRILDAGADDYLVKPYDRQVLLARMRALLRRFAPMNVQGR----KMFVDDEC 144

Query: 137 -----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
                 R   V G    L  +E  IL +L  + G  V +  + S ++G +D AV+   V+
Sbjct: 145 ALDQQARSLVVAGVAHKLGTKEFDILWHLARHTGAVVLRQDLMSVVWG-WDAAVQSRSVD 203

Query: 192 SHISKLRKKLR 202
            ++S+LR  L+
Sbjct: 204 MYVSRLRASLK 214


>gi|114797342|ref|YP_762221.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114737516|gb|ABI75641.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 228

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 19/209 (9%)

Query: 11  VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           + DG+ A+    G           EE L+ +A E V  +   +   G    E+ R +R  
Sbjct: 26  LTDGFTAMVAASG-----------EEALRKAAEERVDLVILDVDMPGMNGREVCRQLREK 74

Query: 71  S-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ET 128
             +VP+I ++       T+   ++G +D V KP     +LARV +  R  + + +   + 
Sbjct: 75  GIRVPVIMLTGRSGESDTVAGLEAGANDYVAKPFSFAVLLARVRSQLRSFEQTEDATFDI 134

Query: 129 GPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           GP       +     +G    L  +E  IL+YL    GK VA+  + S ++G ++ AV  
Sbjct: 135 GPYEFRPSMKVLRTKEGRRIRLTEKETEILKYLYRAGGKSVARETLLSEVWG-YNAAVTT 193

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           + +E+HI +LR+K+      DP +++  L
Sbjct: 194 HTLETHIYRLRQKVEP----DPSNAQLLL 218


>gi|71842271|ref|YP_277359.1| Ycf27 [Emiliania huxleyi]
 gi|60101514|gb|AAX13858.1| ompR [Emiliania huxleyi]
          Length = 239

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 21/149 (14%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  S VP+I ++    +   +   + G DD V KP + +E+ ARV ++ RR        
Sbjct: 73  LRKKSNVPIIMLTARGDISDRVMGLEFGADDYVIKPFYPKELEARVRSLLRRSEKTSNYS 132

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++ N    T   +VF D     + G  F L       LE L+ N G+R+++  I
Sbjct: 133 SNKYLFQIGNLTINTQKQQVFRDNARVRLTGIEFSL-------LELLITNAGERLSRAYI 185

Query: 174 FSAIYGLFDE-AVEENVVESHISKLRKKL 201
              ++G   E  ++  VV+ HIS+LR KL
Sbjct: 186 LDTVWGYTPERYLDTRVVDVHISRLRSKL 214


>gi|309809585|ref|ZP_07703442.1| subtilin biosynthesis regulatory protein SpaR [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308170066|gb|EFO72102.1| subtilin biosynthesis regulatory protein SpaR [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 219

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA    P++ ++     +  ++    G DD + KP    E+LAR+ A  RR K   + +
Sbjct: 66  IRAKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGTAELLARIEAHLRREKRERHTS 125

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G IR      +  V  E   L + E +I E L   +G+  ++ QI+  I+G FD   
Sbjct: 126 LNLGGIRFDLSSNEVFVGDEKVHLTKSEYQISELLAKRKGQVFSREQIYELIFG-FDGIG 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + + +  HI  +R K + K   +P+++   +GY   WN
Sbjct: 185 DASAISEHIKNIRAKFQ-KYDENPIETVWGIGYK--WN 219


>gi|238753858|ref|ZP_04615218.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC
           29473]
 gi|238707846|gb|EEQ00204.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC
           29473]
          Length = 239

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 15/179 (8%)

Query: 36  EWLQSSA------REDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           +WL + A      R+   AI    L+  G   + + R IR  S VP++ ++        L
Sbjct: 39  QWLVNGAEVVALVRQSPPAIILLDLMLPGSNGISICREIRQFSDVPIVMVTAKTEEIDRL 98

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGPIRVFSDGRDPEVQG 144
              + G DD + KP   RE++ARV  I RR      V  +RA   P+++          G
Sbjct: 99  LGLEIGADDYICKPYSPREVVARVKTILRRCYRPRDVPTDRA---PLQIDESRFHASYHG 155

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
               L   E R+L+ L    G+   + Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 156 NTLDLTPAEFRLLKTLAMQPGQVFTREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKLES 213


>gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 254

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 35/221 (15%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL------------ELPRIIRAHSQVPLIG 77
           +SLEFE +   +A +  +A+     G+ + VL               R+  A   +P++ 
Sbjct: 31  SSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLTACRRLRTADPTLPVLM 90

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP------- 130
           ++        +   D+G DD + KP    E+LARV A+ RR  ++   AE+GP       
Sbjct: 91  LTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGALTGEGAESGPGALSRDD 150

Query: 131 -------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  +R+ +  R+    G +  L R E  +LE  +++  + + + QI  A++G FD 
Sbjct: 151 HVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQALTREQILRAVWG-FDF 209

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSI 220
               N ++ ++  +RKK      FD     V + R +GY++
Sbjct: 210 EPASNSLDVYVMYVRKKTE----FDDLPRLVQTVRGVGYAL 246


>gi|198276756|ref|ZP_03209287.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135]
 gi|198270281|gb|EDY94551.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL + IR A+  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R 
Sbjct: 61  FELCKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRK 120

Query: 120 K------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  V+  +     +++ ++ R+   QG +  L  +E  +L Y++ N  + +++ +I
Sbjct: 121 AEATVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEI 180

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              ++   FD     N ++ +I+ LRKK+        + +K  +G+
Sbjct: 181 AEKVWNTHFDTGT--NFIDVYINYLRKKIDKDFETKLIHTKPGIGF 224


>gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
 gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
          Length = 226

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP+I ++    +   +   D G +D + KP    E+LAR+  +Y R K
Sbjct: 63  IEVCRRIRQFSCVPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARI-RVYEREK 121

Query: 121 VSNNRAETGPIR-VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  ++ +   ++ +  D +  +V   G    L ++E  +L+ L+ N+   + + ++   +
Sbjct: 122 LVKSKFDEVKVKDIVMDNKTHQVWRSGREIELTKKEYDLLQKLLINKNIVLTRERLIEEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + NVV+  I  LR K+ N      + + R +GY I  N
Sbjct: 182 WG-YDYVGDTNVVDVFIRYLRSKIDNGSKEKLITTIRGVGYVIKDN 226


>gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK--------VSNNRAET---GPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR +        ++ +   T   G +++  D  +  +
Sbjct: 92  GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEDITEDSEATILIGDLKILPDSYEVYL 151

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 152 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 209


>gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes]
 gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes]
 gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes]
 gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes]
 gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes]
 gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes]
 gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes]
 gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes]
 gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes]
 gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes]
 gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes]
 gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes]
 gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes]
 gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes]
 gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes]
 gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes]
 gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes]
 gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes]
 gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes]
 gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR         +++ +   T   G +++  D  +  +
Sbjct: 92  GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 151

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 152 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 209


>gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 239

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 11/134 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV------F 147
           G DD V KP    E++AR+ A+ RR    +   +TG + VF D    E   EV       
Sbjct: 103 GGDDYVTKPFSLEEVVARIRAVLRRTGGVDG-PDTGRL-VFHDLELEEDSHEVRRAGREV 160

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E ++L YLM N  + ++K QI   ++  +D   E  +VES+IS LR+KL  + G 
Sbjct: 161 ELSPTEFKLLRYLMLNPNRVLSKAQILDHVWD-YDFNGEAGIVESYISYLRRKLDTE-GL 218

Query: 208 DP-VDSKRFLGYSI 220
           +P + +KR +GY +
Sbjct: 219 EPLIHTKRGVGYVL 232


>gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1]
 gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1]
          Length = 226

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR +   P+I ++   +    +     G DD V KP    E++ARV A  RR K
Sbjct: 60  LEICQTIRENYNFPIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQLRRYK 119

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N    G + +  D     +  +   L   E  IL  L  ++GK V   QIF 
Sbjct: 120 TMTPKEEKNMVTIGALTIDQDNHQCILNNQTLSLTPTEFSILWLLCKHKGKVVTVDQIFQ 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G        + +  HI  LR+K+
Sbjct: 180 ELWGEKYYTNSSSSIMVHIRHLREKM 205


>gi|317406334|gb|EFV86566.1| hypothetical protein HMPREF0005_05179 [Achromobacter xylosoxidans
           C54]
          Length = 222

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  VL+  R    +   P++ I+    L   +   D+G DD + KP    E+LAR+ A
Sbjct: 57  GSGLAVLKHLRA--RYDATPVLIITARDRLSERVQGLDAGADDYIVKPFQLDELLARLRA 114

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVA 169
           + RR    ++ +    +R      DP  +     G    L   E R L  LM   G+ V+
Sbjct: 115 VVRR----SSNSVVSVLRCRDVQLDPARRVVTRAGAEVVLSASEYRTLLALMERAGQTVS 170

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+ +A+YG     +E N V  ++ +LR+    KLG D V +   LGY I
Sbjct: 171 REQLEAAVYG-GSGTIESNTVAVYVHQLRR----KLGDDLVATVHGLGYRI 216


>gi|310824267|ref|YP_003956625.1| winged helix family two component transcriptional regulator
           [Stigmatella aurantiaca DW4/3-1]
 gi|309397339|gb|ADO74798.1| Two component transcriptional regulator, winged helix family
           [Stigmatella aurantiaca DW4/3-1]
          Length = 241

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 7/171 (4%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           E L  + R     +   L+  G   LE+ R +R  S VP+I ++        +   ++G 
Sbjct: 47  EGLAEAGRHAYDVLLLDLMLPGRDGLEVCRELRTRSDVPIIMVTARGEEIDRVLGLETGA 106

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLP 150
           DD + KP   RE+LAR+ A  RR +  N      P+ V     DP      + G+   L 
Sbjct: 107 DDYLPKPYSSRELLARIRAQVRRAR-GNAGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLT 165

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E  +L  L    G+ +++ Q+   I G  DE  + + ++ HI +LR+KL
Sbjct: 166 SYEFNLLRVLAERAGRVLSREQLLDLIKGSADEVFDRS-IDVHIFRLRQKL 215


>gi|331645097|ref|ZP_08346208.1| transcriptional regulatory protein CreB [Escherichia coli M605]
 gi|330909844|gb|EGH38354.1| two-component response regulator CreB [Escherichia coli AA86]
 gi|331045854|gb|EGI17973.1| transcriptional regulatory protein CreB [Escherichia coli M605]
          Length = 229

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G  +E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFGVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|209544352|ref|YP_002276581.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532029|gb|ACI51966.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 232

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 6/131 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
              G DD + KP    E+LAR+ A+ RR + + +NR   G + +    R     G    L
Sbjct: 101 LSDGADDYIVKPYDFDELLARLDAVSRRYVALVDNRLALGEVEIDLSRRRLSRLGAEVDL 160

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             RE  ++E L    G   ++ QI  A+YGL +E +E N +E  IS++RK    K+G   
Sbjct: 161 TAREWAVIELLARRAGAICSREQIEDALYGLGEE-IESNAIEVFISRVRK----KVGAGL 215

Query: 210 VDSKRFLGYSI 220
           + + R  GY +
Sbjct: 216 IRTVRGRGYRL 226


>gi|148997681|ref|ZP_01825245.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147756180|gb|EDK63222.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
          Length = 225

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V K    + +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKLFDQQVLLAKVQGLLRRSYEFGRDE 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + + +   D   QG+V  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL  +     +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGL 222


>gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
 gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
          Length = 240

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR         +++ +   T   G +++  D  +  +
Sbjct: 99  GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 158

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 159 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 216


>gi|172059033|ref|YP_001815493.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991554|gb|ACB62476.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 236

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 9/151 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ R +R  S+VP+I ++   S   T+   + G +D V KP   RE+LARV A  R   
Sbjct: 63  MEVCREVRKTSKVPIIMLTAKDSEIDTVLGLELGANDYVTKPFSSRELLARVKAHLRNVN 122

Query: 119 -LKVSNNRAETGPIRV---FSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++ +   A  GP++V   + D     V  Q +   L +RE  +L YL  N G+ + +  
Sbjct: 123 TVEAAPANAGPGPLKVGELYIDTNSHTVTRQDQKIELTQREFELLHYLAKNIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKVED 212


>gi|322806654|emb|CBZ04223.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 226

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 7/165 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+   +++ +
Sbjct: 61  LEVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAFKK-R 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFS 175
           +   R +   IR      D      ++      L  RE  +L+ LM N+   + ++ +  
Sbjct: 120 IVTVRKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILME 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 180 KVCG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|253682540|ref|ZP_04863337.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562252|gb|EES91704.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 223

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 86/166 (51%), Gaps = 7/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + IR  S+VP+I ++     +  L  ++ G DD V KP   + ++A+V A+ +R   
Sbjct: 61  KVCKSIRDLSKVPIIMLTAKGEEEDKLFGYELGADDYVTKPFSPKVLVAKVKALLKRSVI 120

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   N      +++     + ++ G+V  L  +E  +L + + N+   +++ ++   +
Sbjct: 121 DIKEEKNIINYNGLQINEPSNEVKINGKVITLSPKEYDLLLFFVKNKDIVLSRDKLLDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD       V++H+ +LR+KL++K  +  + + R  GY  + N
Sbjct: 181 WG-FDYDGGLRTVDTHVKRLREKLKDKSNY--IVTVRGKGYKFEVN 223


>gi|238923307|ref|YP_002936822.1| response regulator [Eubacterium rectale ATCC 33656]
 gi|238874981|gb|ACR74688.1| response regulator [Eubacterium rectale ATCC 33656]
          Length = 218

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 1/129 (0%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I ++   +L   L    SG +D + KP    E+LARV  + RR      +     I 
Sbjct: 73  IPVIFLTAKATLDDRLRGLTSGAEDYMVKPFEIVELLARVNIVLRRYNKMEQQLTFKDIA 132

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           + +  ++    G+   L  +E  +LE LM N+   + + +I+  I+G  + +VE   ++ 
Sbjct: 133 IDTKNQNVSKAGKHIELTPKEFELLELLMRNKNITLFREKIYEEIWG-SEYSVESRTLDL 191

Query: 193 HISKLRKKL 201
           HI +LRKKL
Sbjct: 192 HIQRLRKKL 200


>gi|229589367|ref|YP_002871486.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361233|emb|CAY48097.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 239

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 21/203 (10%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
           Y+A FG     +    ++      Q+   E    +   L+  GE  L L R +R+ S +P
Sbjct: 28  YLARFGILATGVTDGTTMR-----QAMQAETFDVVVLDLMLPGEDGLSLCRWLRSESDIP 82

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134
           ++ ++        +   + G DD ++KP   RE++AR+  I RR  V ++R E      F
Sbjct: 83  ILMLTARCEPTDRIIGLELGADDYMSKPFEPRELVARIQTILRR--VRDDRTEQRANIRF 140

Query: 135 SDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAVE 186
            + R   V        G V PL   E R+L ++   R +RV ++ Q+  A  G   EA +
Sbjct: 141 DNWRLNSVLRQLVADDGLVVPLSNAEFRLL-WVFIERPRRVLSREQLLDAARGRSIEAFD 199

Query: 187 ENVVESHISKLRKKLRNKLGFDP 209
            +     I  L  +LR KLG DP
Sbjct: 200 RS-----IDLLVSRLRQKLGDDP 217


>gi|117617885|ref|YP_858673.1| transcriptional regulatory protein CreB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559292|gb|ABK36240.1| transcriptional regulatory protein CreB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 224

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 19/226 (8%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-- 61
           L++D A + D  I     DG  +E F   +     Q   R + +  +  ++  G   +  
Sbjct: 8   LVEDEASIADTLIYALQTDGFEVEWFMLGQ-----QLLTRLEQTRPDFLILDVGLPDISG 62

Query: 62  -ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + +R  + +PL+ ++        L   + G DD V KP   RE+ ARV  I RR +
Sbjct: 63  FELCKQVRVLTDIPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRRSQ 122

Query: 121 VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                 +   + V  + R     +G+   L R E  +L+ LM   G+  ++ Q+   ++ 
Sbjct: 123 PVA--PQPSALLVLDEERARIHFRGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
             +E+++   V++HI  +R KLR     DP    + + R LGYS++
Sbjct: 181 DAEESLDRT-VDTHIKTIRAKLREH---DPEANLILTHRGLGYSLE 222


>gi|78223889|ref|YP_385636.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78195144|gb|ABB32911.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 226

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 20/218 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGK-GEKVLELPRI 66
           L K+GY  +   DG+S            L  + R+  D+  ++  L G  G +V ++ + 
Sbjct: 21  LEKEGYRTIAAPDGIS-----------GLDEAQRQVPDLILLDLMLPGMMGTEVCKILKK 69

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123
               +++P+I ++        +  F+ G DD V KP   RE+L R+ A+ RR    + S 
Sbjct: 70  SEKTAKIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRIKAVLRRSLPDEPSG 129

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                GPI +  D     V GE   L   E ++L  L    G+  ++  +   ++G ++ 
Sbjct: 130 KTMRIGPIAIDPDRHTVAVAGEEIVLTTTEFKLLLNLAERLGRVQSRDLLLKNVWG-YNY 188

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +   V++HI++LR KL      D + + R  GY ++
Sbjct: 189 VGDTRTVDTHITRLRTKLGP--AGDLIKTVRGFGYKME 224


>gi|28198188|ref|NP_778502.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|182680822|ref|YP_001828982.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|28056258|gb|AAO28151.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|182630932|gb|ACB91708.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307579290|gb|ADN63259.1| two component transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 6/132 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   +++  +   + G DD ++KP   RE  AR   + RR +   N +E   I 
Sbjct: 73  TPVLILTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLRRNR--GNASEVVRIG 130

Query: 133 VF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            F   +      + GE   LP RE R+LE L+A  G+ V K +I ++++  FD+    N 
Sbjct: 131 GFEFDNAAHRICLNGEPIKLPNREYRLLEILIARLGQIVGKDEIGNSLFN-FDDNAGPNA 189

Query: 190 VESHISKLRKKL 201
           +E ++++LR+KL
Sbjct: 190 IELYVARLRRKL 201


>gi|162147449|ref|YP_001601910.1| two component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786026|emb|CAP55608.1| putative two component response regulator [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 277

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI 131
            P+I I+   +     +    G DD V   I   E+LAR+ AI RR    ++   + G +
Sbjct: 85  TPVIIIARDTTPPAIAEVLSVGADDCVPASIDPTELLARLRAIVRRAGGHDSLTLQIGRL 144

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V  + R+  + G+  PL RRE  ++E L   + + ++K  +  ++Y    E     V++
Sbjct: 145 TVNVNQREVHIDGKPVPLTRREYDVVELLALRKNQALSKESVLDSLYAGQHEP-SGKVID 203

Query: 192 SHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             I K+RKK+R  LG  +P+ ++  +GY ++
Sbjct: 204 VMICKIRKKMRG-LGIEEPLTTQWGIGYRLN 233


>gi|114777962|ref|ZP_01452876.1| Two comoponent transcriptional regulator, winged helix family
           protein [Mariprofundus ferrooxydans PV-1]
 gi|114551749|gb|EAU54301.1| Two comoponent transcriptional regulator, winged helix family
           protein [Mariprofundus ferrooxydans PV-1]
          Length = 227

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 34/218 (15%)

Query: 2   FVLIDD---------RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            +LIDD         R L  +G+      DG+S  G   L+ +++       +++ ++  
Sbjct: 3   ILLIDDDRELCELMSRFLSSEGFDVCCEHDGIS--GLARLKQDQF-------ELAVVDIM 53

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           + GK    ++L R +R  S +P+I ++        +   + G DD + KP + RE+ AR+
Sbjct: 54  MPGKNG--MDLLRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARI 111

Query: 113 AAIYRRLKV---SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            A+ RR      S+++ ET  G +      R     GE   L   E  IL  LM + G+ 
Sbjct: 112 RAVLRRSDTQQESDDKQETRFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEV 171

Query: 168 VAKTQIFSAI----YGLFDEAVEENVVESHISKLRKKL 201
           V+K ++  A     +G FD       ++ HI  LRKK+
Sbjct: 172 VSKYELSQAALGKRHGPFD-----RTLDVHIGHLRKKI 204


>gi|70727234|ref|YP_254150.1| hypothetical protein SH2235 [Staphylococcus haemolyticus JCSC1435]
 gi|123659511|sp|Q4L481|GRAR_STAHJ RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|68447960|dbj|BAE05544.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 224

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 9/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121
           R IR  S VP++ +S   +    +   + G DD + KP H   ++A++ AIYRR+     
Sbjct: 64  RKIRQVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFHTNVLIAKLQAIYRRVYEFGA 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R       +    +D   +G+ V  L + E  ILE L+  + + V +  + +A++  
Sbjct: 124 EEKRTLNWQDALVDLSKDSIQKGDSVIYLSKTEMIILEMLIQKQNQIVTRDTLITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            DEA V +N +  ++++LRKKL + +G D  +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLSD-IGMDTQIETKVGKGY 220


>gi|330902745|gb|EGH33758.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 178

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 80/155 (51%), Gaps = 11/155 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
           R +R     P++ ++        ++  D+G DD V KP+H R +LAR+ A+ RR +    
Sbjct: 2   RSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRSEAPQV 61

Query: 124 -----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R   GP+ V +  R+  ++ +   L   E  +L  L+AN G+ +++ +IF+A+ 
Sbjct: 62  PAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFTALR 121

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           G+  +  ++  ++  IS++R     K+G DP+  +
Sbjct: 122 GVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 151


>gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional
           regulator [Teredinibacter turnerae T7901]
 gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Teredinibacter turnerae T7901]
          Length = 233

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 14/122 (11%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFSD---GRDPEV 142
            + G DD + KP   RE+ ARV A+ RR  V+ N  ET P       VF D    ++  V
Sbjct: 93  LEVGADDYLTKPFSVRELQARVRALLRR--VAFNTQETNPTAGPDQLVFGDLSINKNKHV 150

Query: 143 ---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
                E   L  +E  +L YL ++ G+  ++ Q+ SA++G +  +  E+ V SHI++LR 
Sbjct: 151 VTLADEEIKLTAKEFDLLLYLASSPGQVFSRDQLLSAVWG-YHHSGYEHTVNSHINRLRA 209

Query: 200 KL 201
           KL
Sbjct: 210 KL 211


>gi|228996503|ref|ZP_04156142.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228763135|gb|EEM12043.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 210

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 4/138 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR      + 
Sbjct: 55  IRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQE 114

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           E    G I +    R  E+ GE   L  +E  +L +L  + G+  ++ Q+   ++G +D 
Sbjct: 115 EELQFGSIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHNGQVFSREQLLEKVWG-YDY 173

Query: 184 AVEENVVESHISKLRKKL 201
           A     V++H+  +R KL
Sbjct: 174 AGSTRTVDTHVKTMRLKL 191


>gi|218516673|ref|ZP_03513513.1| probable two-component response regulator protein [Rhizobium etli
           8C-3]
          Length = 225

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 19/170 (11%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA  +Q  ++ ++   + +  +   D G DD + KP    E  ARV  + RR 
Sbjct: 60  LDVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDISEFEARVRVLLRR- 118

Query: 120 KVSNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +     A  G          R FS G  P        +P RE  +LE L    GK VAK 
Sbjct: 119 QAGLRSATVGFGGISFDLTSRTFSAGSTP------LDIPARELGLLEILFMRAGKVVAKE 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I  ++   FD+ +  N +E ++S+LRK+L +  G   V + R +GY +D
Sbjct: 173 AIIQSLTA-FDDDISSNAIEQYVSRLRKRL-SPHGL-TVKTARGIGYYLD 219


>gi|62180703|ref|YP_217120.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224583379|ref|YP_002637177.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|62128336|gb|AAX66039.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224467906|gb|ACN45736.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322715177|gb|EFZ06748.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 240

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K    +    AE+ P+ +          G+   L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|42783708|ref|NP_980955.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739637|gb|AAS43563.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 230

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 27/225 (12%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L+K+G+      DG   EG N+     +LQ S   D+  ++  +       LE+ RII
Sbjct: 20  KYLIKEGFQVTIASDGE--EGVNT-----YLQGSF--DLIILDIMM--PKLDGLEVVRII 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRA 126
           R  S VP++ +S   +          G DD + KP    E+ ARV A I R  K S    
Sbjct: 69  REKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKYSATET 128

Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               I++     DP     E  G+   L  +E  IL+  + N+ +   K QI++ I+   
Sbjct: 129 TEKMIQIGDLTLDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTLIWN-E 187

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
           +   ++NV+  H+ +LR+K+ +    DP + +       +GY +D
Sbjct: 188 EYYGDDNVINVHMRRLREKIES----DPSNPEYIKTLWGIGYKLD 228


>gi|16132215|ref|NP_418815.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli str. K-12 substr. MG1655]
 gi|89111106|ref|AP_004886.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli str. K-12 substr. W3110]
 gi|170083784|ref|YP_001733104.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli str. K-12 substr. DH10B]
 gi|238903485|ref|YP_002929281.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli BW2952]
 gi|312970092|ref|ZP_07784274.1| transcriptional regulatory protein creB [Escherichia coli 1827-70]
 gi|117433|sp|P08368|CREB_ECOLI RecName: Full=Transcriptional regulatory protein CreB
 gi|147250|gb|AAA24374.1| 28 kd protein [Escherichia coli]
 gi|537238|gb|AAA97294.1| creB [Escherichia coli str. K-12 substr. MG1655]
 gi|1790860|gb|AAC77351.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli str. K-12 substr. MG1655]
 gi|85677137|dbj|BAE78387.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli str. K12 substr. W3110]
 gi|169891619|gb|ACB05326.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli str. K-12 substr. DH10B]
 gi|238860860|gb|ACR62858.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli BW2952]
 gi|260450790|gb|ACX41212.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|310337590|gb|EFQ02701.1| transcriptional regulatory protein creB [Escherichia coli 1827-70]
 gi|315138952|dbj|BAJ46111.1| DNA-binding response regulator CreB [Escherichia coli DH1]
          Length = 229

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARKQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|75758856|ref|ZP_00738968.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218899977|ref|YP_002448388.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903325|ref|ZP_04067456.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|74493622|gb|EAO56726.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218542108|gb|ACK94502.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228856286|gb|EEN00815.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 230

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    K S  
Sbjct: 67  RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 126

Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I+V    R   V      L   E  IL Y M N+G  + + Q+ S I
Sbjct: 127 PLENEDDTLSIHGIQVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLISRI 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +G ++ A ++  V SHI  LR KL  K  +
Sbjct: 187 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 215


>gi|332185092|ref|ZP_08386841.1| response regulator [Sphingomonas sp. S17]
 gi|332014816|gb|EGI56872.1| response regulator [Sphingomonas sp. S17]
          Length = 235

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R +R  SQ+P+I ++              G DD + KP   R ++AR+ AI RR +
Sbjct: 62  LELLRRLREKSQIPVIFLTSKDDELDEALGLAMGADDYIAKPFSQRLLIARIRAILRRSE 121

Query: 121 VSNNRAET------GPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVA 169
            S+    T      GP+       DP       +GE   L   E  ILE L    G    
Sbjct: 122 GSSQTPGTPAAEVQGPLTRGQLAMDPARHKVTWKGEPVTLTVTEFLILETLAQRPGIVRT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           + Q+  A Y   D  V++  ++SHI +LR+K R     FD +++    GY
Sbjct: 182 RNQLMDAAYQ-DDIYVDDRTIDSHIKRLRRKFRQVDPEFDAIETLYGAGY 230


>gi|332284405|ref|YP_004416316.1| two-component transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428358|gb|AEC19692.1| two-component transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 235

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 4/152 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           + P+I +S   +L   +    SG DD + KP    E+L R  A+ RR +   SN      
Sbjct: 75  KTPVIVLSALTALDERVRGLKSGGDDYLTKPFALIELLTRAEALVRRSQSNASNRVLTVA 134

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +R+          G+   L  RE R+L Y+M +  + + +  +  A++G +    + NV
Sbjct: 135 DLRLDLTSSKATRSGKPLSLQPRETRLLTYMMMHPDQVLTRAMLLGAVWG-YQFNPQTNV 193

Query: 190 VESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +++ +S+LR+K+  ++ G   + + R +GY++
Sbjct: 194 IDAAVSRLRQKVDGDQQGPALIHTVRGVGYTL 225


>gi|326789530|ref|YP_004307351.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540294|gb|ADZ82153.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 225

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122
           IR  S+VP+I +S        +   + G DD + KP     + A++ A+ RR    ++  
Sbjct: 67  IRKKSKVPIIFLSSASDSMNIVMAMNMGADDFITKPFELEVLAAKLQAMLRRTYDFIEEC 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G I   SD     V      L + E  +L+ L  N+GK V++ +I   ++   D
Sbjct: 127 TEIEHKGAILSLSDAT-LVVGSHKIKLTKNEFLMLQILFENKGKVVSREEIMKKLWDT-D 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +++N +  ++ ++RKKL      D + +K+ +GY ++
Sbjct: 185 YFIDDNTLTVNMGRVRKKLEEAGLVDFITTKKGMGYILE 223


>gi|190893427|ref|YP_001979969.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190698706|gb|ACE92791.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 225

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 19/170 (11%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA  +Q  ++ ++   + +  +   D G DD + KP    E  ARV  + RR 
Sbjct: 60  LDVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDISEFEARVRVLLRR- 118

Query: 120 KVSNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +     A  G          R FS G  P        +P RE  +LE L    GK VAK 
Sbjct: 119 QAGLRSATVGFGGISFDLTSRTFSAGSTP------LDIPARELGLLEILFMRAGKVVAKE 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I  ++   FD+ +  N +E ++S+LRK+L +  G   V + R +GY +D
Sbjct: 173 AIIQSLTA-FDDDISSNAIEQYVSRLRKRL-SPHGL-TVKTARGIGYYLD 219


>gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR         +++ +   T   G +++  D  +  +
Sbjct: 92  GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 151

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 152 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 209


>gi|160935922|ref|ZP_02083296.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441164|gb|EDP18881.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC
           BAA-613]
          Length = 231

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 14/210 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DD+ +V+   I L G+    ++ ++  E  E+L    + +V  +   ++  G   
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFKVIKAYDGYEALEYLD---KNEVDLLIVDVMMPGLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +     +R +S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 61  IRTTLKVRENSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQMRRYT 120

Query: 119 -LKVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            L   N +A+      G +++  D ++  V G+   L   E  IL  L+ N GK  +  +
Sbjct: 121 QLGNLNQQADGQIYKCGGLQINDDNKEVTVDGDAIKLTPIEYNILLLLVKNAGKVFSIDE 180

Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKL 201
           I+  I+   +EA+  +N V  HI  +R+K+
Sbjct: 181 IYEQIWN--EEAIGADNTVAVHIRHIREKI 208


>gi|126700671|ref|YP_001089568.1| two-component system response regulator [Clostridium difficile 630]
 gi|255308033|ref|ZP_05352204.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
 gi|115252108|emb|CAJ69946.1| Two-component response regulator [Clostridium difficile]
          Length = 226

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S VPLI +S   S    +   ++G DD + KP     ++ ++  I RR+    N +
Sbjct: 67  IRAISNVPLIFLSSRDSDMDLIMGINNGADDYITKPFSIEILVTKINGIIRRVY---NYS 123

Query: 127 ETGPI-----RVFSDGR---DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  I      +F  G+     + + +   L + E +IL  L+ N+ + V++  +   ++
Sbjct: 124 DSNSILYCEDLMFDVGKGIIKHKYKDKSIELTKNEIKILTLLLKNKNRVVSRESLMMTLW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              DE V +N +  ++++LR K++ +LGFD  + +K+ +GY I
Sbjct: 184 D-NDEFVTDNALTVNMNRLRSKVK-ELGFDDFIKTKKGIGYII 224


>gi|114326810|ref|YP_743967.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114314984|gb|ABI61044.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
          Length = 226

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 7/188 (3%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGV 95
           ++ +S   D   ++  L G G   L L   +R+     P++ +S    +   +    +G 
Sbjct: 38  FMAASENFDAIVLDRMLPG-GIDGLRLLETLRSQDVNTPVLFLSALSGVDERVKGLKAGG 96

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           DD ++KP    E+LARV A+ RR K      +     + +    R  +  G+   L  RE
Sbjct: 97  DDYLSKPFAFSELLARVEALTRRGKTDAPTTKLVVADLEMDLLSRGVKRGGQKIDLQPRE 156

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
            R+LE+LM +  + V +T +   ++   FD   + NV++ H+S+LR+K+        + +
Sbjct: 157 FRLLEFLMRHADQVVTRTMLLEGVWDYHFDP--QTNVIDVHVSRLRQKVDKPFTVSLIHT 214

Query: 213 KRFLGYSI 220
            R  GY +
Sbjct: 215 VRNAGYML 222


>gi|89899389|ref|YP_521860.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344126|gb|ABD68329.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 240

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 25/178 (14%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           GE  L L +  RAH +   +P+I ++        +   D+G DD + KP   +E+LAR+ 
Sbjct: 60  GESGLALAKRWRAHPRTKAIPIIMLTARGDETDRVAGLDAGADDYIAKPFSTKELLARMR 119

Query: 114 AIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           A+ RR         + V     +T   RV          G+   L   E ++L+YLM++ 
Sbjct: 120 AVLRRRAPEQVGGVVSVGALSLDTATYRV-------TFAGQPLKLGPTEFKLLQYLMSHA 172

Query: 165 GKRVAKTQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  ++ Q+   ++G  +F   +EE  V+ H+ +LR+ L  + G   V++ R  GY +
Sbjct: 173 ERVHSRGQLLDKVWGDHVF---IEERTVDVHVKRLREALGAQAG-QMVETVRGAGYRL 226


>gi|333011380|gb|EGK30794.1| transcriptional regulatory protein creB [Shigella flexneri K-272]
 gi|333012275|gb|EGK31657.1| transcriptional regulatory protein creB [Shigella flexneri K-227]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVCSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V+ HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDIHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 5/158 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R+  A    P++ ++    ++  +     G DD V KP    E++AR+ AI RR    + 
Sbjct: 72  RLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMGGEE 131

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + +  D  +    G    L   E ++L YL+ N G+ V+K QI   ++  +
Sbjct: 132 EDALLRVGDLVIDEDAHEVTRAGVQIDLSPTEFKLLRYLVINAGRVVSKMQILDHVWE-Y 190

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           D   E  +VES+IS LR+KL       + + +KR +GY
Sbjct: 191 DWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGY 228


>gi|255280977|ref|ZP_05345532.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bryantella formatexigens DSM 14469]
 gi|255268425|gb|EET61630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bryantella formatexigens DSM 14469]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 7/149 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE    + R IR  S VP+I I+     +  L+ +  G DD V KP     + A+V A+ 
Sbjct: 58  GENGFTICRKIREISDVPVIFITARVQEEDELNGYAMGADDYVTKPFSLPVLYAKVTALI 117

Query: 117 RRLKVSN--NRAETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQ 172
            R+  S+   R   G I V  D R  EV    E   LP +E  +L + + N  +  ++ Q
Sbjct: 118 GRMHGSSAGRRIRAGDIEV--DVRTHEVWSGEERCELPPKEYELLLFFLENPKRIFSREQ 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +    +G +D    E VV++HI KLRK L
Sbjct: 176 LLIRFWG-YDFDGNERVVDNHIKKLRKLL 203


>gi|213854683|ref|ZP_03382923.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 184

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K
Sbjct: 14  LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 73

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +    AE+ P+ +          G+   L   E R+L+ L    GK  ++ Q+ + 
Sbjct: 74  PQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNH 132

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           +Y  +   V +  ++SHI  LR+KL +
Sbjct: 133 LYDDY-RVVTDRTIDSHIKNLRRKLES 158


>gi|210617979|ref|ZP_03291838.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
 gi|210149053|gb|EEA80062.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
          Length = 225

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 76/145 (52%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +RA SQVP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI +R + 
Sbjct: 65  QVCREVRALSQVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVNAILKRGRA 124

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +  + G I +       ++      L  +E  +L Y + N+   +++ +I + ++ 
Sbjct: 125 AASEDLIDAGVIVIDKAAHLVKIDDVPIDLSVKEFELLTYFVENQKMALSREKILNNVWD 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   +   +++H+ KLR KL  K
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGEK 208


>gi|168818174|ref|ZP_02830174.1| response regulator [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205344977|gb|EDZ31741.1| response regulator [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320086566|emb|CBY96337.1| probable transcriptional regulator ycf27 OmpR-like protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 240

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K    +    AE+ P+ +          G+   L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|166030990|ref|ZP_02233819.1| hypothetical protein DORFOR_00671 [Dorea formicigenerans ATCC
           27755]
 gi|166029257|gb|EDR48014.1| hypothetical protein DORFOR_00671 [Dorea formicigenerans ATCC
           27755]
          Length = 223

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP+I +S        +   + G D+ V KP     + A+V A+ RR    + + 
Sbjct: 67  IRKISKVPIIFLSSANDNMNIVMAMNMGGDEFVEKPFDLSVVTAKVQAVLRRAYAFRGTM 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + +  +        +   L + E RIL+ LM N G+ V++  + + ++   DE
Sbjct: 127 DVLEHAGVMLNVNDATVTCGSQSVELTKNEFRILKLLMENSGRIVSRENLITRLWE-SDE 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++N +  ++++LRKKL      + + +K+ +GY ++
Sbjct: 186 FIDDNTLTVNVARLRKKLEEIGAENWIQTKKGIGYIVE 223


>gi|26986774|ref|NP_742199.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148545300|ref|YP_001265402.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031064|ref|YP_001666295.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719233|ref|YP_001746921.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|325272092|ref|ZP_08138528.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|24981367|gb|AAN65663.1|AE016193_4 DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148509358|gb|ABQ76218.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
 gi|166857552|gb|ABY95959.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757236|gb|ACA70552.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
 gi|324102788|gb|EGC00199.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 19/167 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L   IR  S+V +I ++    +   L   D G DD + KP    E+LAR+ ++ RR   
Sbjct: 61  DLLETIRKTSRVRIIMLTARGRINDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGDE 120

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 LK+++   ++   RVF  G   ++  + F L       L  LM+  G+ + ++Q
Sbjct: 121 LVEKSSLKIADLELDSVRHRVFRGGTRIDLTTKEFAL-------LHLLMSRTGEALTRSQ 173

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I S ++ + FD   + NV++  I +LR K+ +      + + R +GY
Sbjct: 174 IISLVWDMNFD--CDTNVIDVAIRRLRSKIDDPFETKLIHTLRGVGY 218


>gi|322804938|emb|CBZ02497.1| putative two component response regulator transcriptional
           regulatory protein [Clostridium botulinum H04402 065]
          Length = 217

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 4/149 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I ++    +   +     G DD + KP    E+LAR+ A+ RR        +   + 
Sbjct: 72  IPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLRRCDKMEEVIKLNHLN 131

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +F   R  + +GE+  +  +E  +L   + N+   +++ QI   ++G +D   E   V+ 
Sbjct: 132 IFPKQRLVKSEGEIIDITLKEYELLMLFIKNKNIALSRDQILERVWG-YDYFGETRTVDI 190

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           H+ ++R+KL  K   D + +   +GY ++
Sbjct: 191 HVLRIREKLNLK---DCIKTVYKVGYRLE 216


>gi|310826554|ref|YP_003958911.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308738288|gb|ADO35948.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAET-G 129
            VP++ ++   S    +   D G DD + KP    E+LAR+ A+ RR  +V  + A T  
Sbjct: 72  NVPVLLLTAKDSTADKVKGLDMGADDYLVKPFVTEELLARIRALGRRPWEVYQDNAITFS 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +  +  +  + G    L  +E ++LE  + N G  ++K QI   I+G+   A+ EN 
Sbjct: 132 DLSLNINSGELLIGGAPIKLTSKEAQLLEMFIRNPGMTISKEQILDRIWGIESMAM-ENS 190

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VE ++  LRKKL+       + + R LGY
Sbjct: 191 VEIYVHYLRKKLKKSRTV--IKTIRGLGY 217


>gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 242

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+       
Sbjct: 71  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTGATG 130

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G IR+ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVIHVGNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|291458362|ref|ZP_06597752.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418895|gb|EFE92614.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 230

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 10/170 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P++ +S   +    +     G DD ++KP   RE+LAR+ A  RR + 
Sbjct: 61  EVCRKIRDELLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRREQR 120

Query: 122 SNN-RAETGPIRVFSD--GRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S    AE    +++ +  G D      ++ GE  PL +RE  I+E L  + G+  ++  I
Sbjct: 121 SQYINAEKKRTKLYFNELGIDLLEHSVKISGEAIPLSKREYDIVELLALHAGQVFSREHI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  ++G   E     VVE HI K+RKK  +++  D        G    WN
Sbjct: 181 YERVWGYDLEGDSYTVVE-HIRKIRKKF-SEVSPDTEYISTVWGIGYKWN 228


>gi|253580967|ref|ZP_04858229.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847809|gb|EES75777.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 247

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 11/144 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------L 119
           IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR       +
Sbjct: 83  IREENPLPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTRLGAAI 142

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V N    ETG + +  D ++  V G+V  L   E  IL  LM N+G+  +  QI+  I+
Sbjct: 143 PVENAHIYETGGLSINDDLKEVRVDGDVVKLTPIEYNILFLLMKNQGRVFSINQIYENIW 202

Query: 179 GLFDEAV-EENVVESHISKLRKKL 201
              +EAV  +N V  HI  +R+K+
Sbjct: 203 N--EEAVAADNTVAVHIRHIREKI 224


>gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074]
 gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 246

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 112/234 (47%), Gaps = 23/234 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   V+D        +G    V+++G ++LE      +S R D+  ++   + + 
Sbjct: 15  ILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEK----AASYRPDLIVLD-IQMPRM 69

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + +    R+  A   VP++ ++   ++   +   D+G DD + KP    E+ ARV A+ R
Sbjct: 70  DGLTAARRVRAAQDTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLR 129

Query: 118 RLKVSNNRA---ETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRV 168
           R   +  +A   + G +  F+D R      EV        L R E  +LE L+A+  + +
Sbjct: 130 RSSYAVEQAAPDDDGDVLAFADLRMDLSTREVLRGNRPVELTRTEFTLLEMLLAHPRQVL 189

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            + QI  A++G FD     N ++ ++  LR+K   + G +P  V + R +GY +
Sbjct: 190 TREQILKAVWG-FDFEPTSNSLDVYVMYLRRK--TEAGGEPRLVHTVRGVGYVL 240


>gi|255533554|ref|YP_003093926.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255346538|gb|ACU05864.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 227

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 4/154 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNN 124
           + ++ V ++ ++   S +  +   +SG DD + KP    E++AR+  + RR        +
Sbjct: 71  KRNTDVAILMLTALGSTENIVTGLESGADDYLVKPFKLEELVARMRTLIRRSSKQAAVTD 130

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           R     + +    +     G+   L   E R+LEYL+ N  K +++ QI   ++ + D  
Sbjct: 131 RISIADLEINIASKTVTKTGKPVNLTATEYRLLEYLLKNHNKVLSRIQILENVWDI-DFN 189

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  NVV+ +I+ LRKK+ N  G   + +   +GY
Sbjct: 190 LGTNVVDVYINYLRKKIDNVNGGRLIHTVFGMGY 223


>gi|300779477|ref|ZP_07089335.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300504987|gb|EFK36127.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 4/166 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  R       V +I   D  +++  +D    G DD + KP H  E+ AR+ +
Sbjct: 57  GDGLSILENLRSRSKQDGVIIISAKD--AIEDKIDGLKLGADDYLAKPFHLSELGARIYS 114

Query: 115 IYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR    S N      I +    +   V   +  L R+E  +L +L+ N+ K ++K  I
Sbjct: 115 VIRRKHFGSTNGIYVNEIYIDLLAKTVRVNSLLLTLTRKEFDLLLFLVGNKNKNISKVAI 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              + G + D     + + SH+  L+KKL      D + +   +GY
Sbjct: 175 AEHLSGEMADMMDNHDFIYSHLKNLKKKLTEAGCKDYIKTTYGMGY 220


>gi|221195649|ref|ZP_03568703.1| DNA-binding response regulator [Atopobium rimae ATCC 49626]
 gi|221184415|gb|EEE16808.1| DNA-binding response regulator [Atopobium rimae ATCC 49626]
          Length = 223

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 18/166 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S V +I ++   S    L     G DD V KP + + +L  +A + RR+ V 
Sbjct: 63  VCREVRQKSNVAIIAVTSRNSDLDELMMLSLGADDFVAKPYNTQILLLHIATVLRRVGVV 122

Query: 123 NNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              +          +T   RV + G   E       L + E RIL  LM N G  V++ +
Sbjct: 123 AEPSAEITHGGVTLDTAACRVHAAGGSAE-------LTKNELRILAILMRNAGTVVSRQR 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I   ++   DE V++N +  ++S LR+ L      + V ++R LGY
Sbjct: 176 IQEELWQ-SDEFVDDNTLTVNVSHLRQTLAGIGVEEYVSTRRGLGY 220


>gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 14/210 (6%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-S 71
           +GY      DG+S  G +       L   A+ D++ ++  L   G   +EL R +RA  +
Sbjct: 25  EGYRVTVAHDGMS--GLS-------LAREAQPDLAILDWML--PGLTGIELCRRLRATGN 73

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           ++P+I ++    +   +   D+G DD V KP    E+LAR+ A  RR + V  +  +   
Sbjct: 74  KIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHLRRTQEVDEDILQFED 133

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    R+         L  +E  +LEYL++N  +   + QI   ++G +D   + N++
Sbjct: 134 LSLNRRTREVRRGQRSIELTAKEFDLLEYLLSNPRQVYTRDQILEKVWG-YDFMGDSNII 192

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++  LR KL  +     + + R +GY++
Sbjct: 193 EVYVRYLRLKLEEQGEKRLIHTVRGVGYAL 222


>gi|15807405|ref|NP_296136.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460233|gb|AAF11960.1|AE002072_2 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 236

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 3/158 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L + +R +S  P++ +S    +Q  +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 78  LDLVQALRQYSSTPVLVLSARTGVQERVAGLNAGADDYLTKPFAMPELDARITALLRR-T 136

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G   + +      V  +   L   E RILE +M    +  ++  I S +YG 
Sbjct: 137 AAGTGVNLGNTALSTSSLLLTVNDKNVNLTEHEARILELMMRTPERVFSRADIESHLYGW 196

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E    N VE  IS+LRKKL +      + + R +GY
Sbjct: 197 --ETPNSNSVEVRISQLRKKLESAGSDLRIRTIRNVGY 232


>gi|262192308|ref|ZP_06050463.1| DNA-binding response regulator [Vibrio cholerae CT 5369-93]
 gi|262031801|gb|EEY50384.1| DNA-binding response regulator [Vibrio cholerae CT 5369-93]
          Length = 203

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    +   +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 48  LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 104

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 105 SGSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 164

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE   +N +E HI  LRKKL + L    V + R +GY I+
Sbjct: 165 G-WDEGCSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 202


>gi|255527946|ref|ZP_05394788.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508373|gb|EET84771.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 217

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 4/149 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I ++   S+   +    +G DD + KP    E+LAR+  + R    + N      + 
Sbjct: 72  IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYNKNTNVINFEDVE 131

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  +       GE   L  +E  +L  L+ N+   + + ++   I+G +D   E   +++
Sbjct: 132 INLEEMTARKAGEAVELTLKEFELLVVLVQNKNVVLTREKLIEKIWG-YDYVGETRTIDN 190

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           HI KLRKKL+ K   D + +   LGY ++
Sbjct: 191 HIQKLRKKLQWK---DKIKTVFKLGYRLE 216


>gi|228950402|ref|ZP_04112562.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809217|gb|EEM55678.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 235

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 65  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSYLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV +   E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 125 PKVEDRMVEQQGLCLYPERLVLKLRNQEIDITRNEAILLEMLMKNYPRVVSREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     D +++ R +GY   I W+
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIEDAIETIRSVGYRLHITWD 230


>gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37]
 gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37]
          Length = 228

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 3/142 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           E+ R +RA S VP++ ++        +   + G DD V KP   RE++ARVAAI RR   
Sbjct: 61  EVCRRLRARSDVPVLFLTARDDEVDRIVGLEMGADDYVTKPFSPREVVARVAAILRRSGT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++    G + +  + R     G+   L   E ++L+ L+   G+   + ++ +A++G
Sbjct: 121 PARDDTRGHGALTLDREARLCRAAGQPVALTGTEFQMLDTLIGAPGRLFTRAELAAAVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
              +   +  ++SH+  LR+KL
Sbjct: 181 AGAQQ-SDRTMDSHLRNLRRKL 201


>gi|114569494|ref|YP_756174.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339956|gb|ABI65236.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 223

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TG 129
           + P++ +S    +   ++   +G DD + KP    E+LARV A+ RR      R +   G
Sbjct: 72  RTPVLILSALGEVDDRVEGLKAGGDDYLVKPYAFAELLARVEALARRRDPDTVRTKLVVG 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +    R    +GE   L  RE R+LE+LM + G+ V +T +   ++   FD   + N
Sbjct: 132 DLEMDLLARTVIREGEDILLQPREFRLLEFLMKHSGQVVTRTMLLEKVWDYHFDP--QTN 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V++ HIS+LR K+        + + R  GY +
Sbjct: 190 VIDVHISRLRSKIDKPFPRSLLHTVRGAGYRL 221


>gi|329849811|ref|ZP_08264657.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
 gi|328841722|gb|EGF91292.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
          Length = 223

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 29/201 (14%)

Query: 47  SAIEAFLIGKGEKVL-----ELPRII-------------------RAHSQVPLIGISDYP 82
           + IEA L G G++ L     E+P +I                      + VP++ +S   
Sbjct: 23  AGIEARLAGDGQQGLDAVKAEMPDVIILDRMMPVMDGVTMLQQLRSEGTDVPVLFLSALG 82

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDP 140
            L+  +    +G DD + KP    E++ARV A+ RR      +     G + +    R  
Sbjct: 83  ELEDRVSGLRAGADDYLVKPYALTELVARVEALARRKDKDAVDTVLRVGDLEMNLISRVV 142

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRK 199
           + Q +   L  RE ++LE+LM + G+ V +T +   ++   FD   + NV++ HIS+LR 
Sbjct: 143 KRQNKTIDLQPREFQLLEFLMRHVGQSVTRTMLLEKVWAYHFDP--QTNVIDVHISRLRS 200

Query: 200 KLRNKLGFDPVDSKRFLGYSI 220
           KL        + + R  GY +
Sbjct: 201 KLDKDFDRPMLHTVRGEGYQL 221


>gi|325265898|ref|ZP_08132584.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
           denitrificans ATCC 33394]
 gi|324982536|gb|EGC18162.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
           denitrificans ATCC 33394]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 1/128 (0%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           F  G DD + KP   RE++AR+ A  RR    N     G +++  + +     G      
Sbjct: 96  FAQGADDYLTKPFSPRELVARIHARLRRAPSGNAWRSAGRLQLNPETQRVTADGANIECS 155

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
             E ++L +LM +  +  ++ Q+   ++G  D  VEE  V++ I +LR+ L +    D +
Sbjct: 156 SSEFKLLHFLMTHPERVFSRRQLLDHVWG-EDACVEERTVDTQIGRLRRLLESAGLSDYI 214

Query: 211 DSKRFLGY 218
            + R  GY
Sbjct: 215 QTVRGSGY 222


>gi|312874618|ref|ZP_07734642.1| putative response regulator protein GraR [Lactobacillus iners LEAF
           2053A-b]
 gi|311089848|gb|EFQ48268.1| putative response regulator protein GraR [Lactobacillus iners LEAF
           2053A-b]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I I+ +      +     G D+ + KPI     +A++ A+ RR    KV +
Sbjct: 66  IRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYDYKVGS 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G +++       E +  V  L R E  ILE L  N   ++AK +         D 
Sbjct: 126 DSIMYGDLKLNLSVAHLEGKNFVLELTRTELLILEILF-NFKNKIAKREAIINYCWQGDA 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +++N +  +I++LRKKL+  +G+D  + +K+ +GY +
Sbjct: 185 FIDDNTLAVNIARLRKKLKT-VGYDELIQTKKGIGYYL 221


>gi|229169182|ref|ZP_04296896.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228614248|gb|EEK71359.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 235

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++      + +F      E +G+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 LAAESDCLGVNGLLLFPSQHTVEWKGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL      + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLEESGIKNAIVTKRGYGYAL 225


>gi|254518869|ref|ZP_05130925.1| LOW QUALITY PROTEIN: response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912618|gb|EEH97819.1| LOW QUALITY PROTEIN: response regulator [Clostridium sp. 7_2_43FAA]
          Length = 194

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 2/158 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R ++     P+I +S   S+   ++    G DD + KP    E+LAR+  ++RR   
Sbjct: 34  EICRRLKRGKNTPVIMLSAKDSVMDKVNGLQIGADDYIPKPFAIEELLARIEVVFRRQDN 93

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++++  +   I +    R  +   E   L  +E  +L  L+ N+ + V + ++   I+G 
Sbjct: 94  LNDSIVKFKDILINRRSRIVKRNNEEINLTNKEYELLMILIDNKDRIVTREELLEKIWGY 153

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E  E NV + +I  LR KL NK   + + + R +GY
Sbjct: 154 GYEP-ETNVTDVYIRYLRSKLNNKNKEEYIQTIRSVGY 190


>gi|157369487|ref|YP_001477476.1| DNA-binding transcriptional activator KdpE [Serratia proteamaculans
           568]
 gi|157321251|gb|ABV40348.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 74/161 (45%), Gaps = 20/161 (12%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I +S   + +  +   D+G DD ++KP    E+LARV    RR    + 
Sbjct: 69  RDLRQWSAIPVIVLSARNAEEDKIAALDAGADDYLSKPFGIGELLARVRVALRR---HSG 125

Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  P+  FS+       R    QGE   L   E R+L  L+AN GK + + Q+ S ++
Sbjct: 126 SLQESPLVSFSEITVDLINRRVLRQGEDLHLTPIEFRLLAELLANSGKVLTQRQLLSHVW 185

Query: 179 GLFDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216
           G        N VE H   LR     LR KL  DP   K  L
Sbjct: 186 G-------PNYVE-HSHYLRIYMGHLRQKLEADPARPKHLL 218


>gi|49481373|ref|YP_038858.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332929|gb|AAT63575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+  
Sbjct: 66  RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVTKQ 125

Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N G  + + Q+ S I
Sbjct: 126 LLENEDDILSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYFMKNPGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +G ++ A ++  V SHI  LR KL  K  +
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|52140690|ref|YP_086139.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|51974159|gb|AAU15709.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL Y M N+G  + + Q+ S
Sbjct: 124 KRLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMRNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|4530445|gb|AAD22036.1| response regulator PnpR [Streptococcus pneumoniae]
          Length = 250

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK----------VSNNRAETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LARV A+ RR K          ++++    G ++V+ +  +    
Sbjct: 111 GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 170

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  L  +E  +L YLM +    + + ++   I+G +D   E  +V+ HI KLR+K+ +
Sbjct: 171 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 229


>gi|307132025|ref|YP_003884041.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Dickeya dadantii 3937]
 gi|306529554|gb|ADM99484.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Dickeya dadantii 3937]
          Length = 273

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 7/172 (4%)

Query: 33  EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92
           E E W++         I   L+  G   L L R IR  S VP+I ++        L   +
Sbjct: 78  EVEPWVREHP---CQLILLDLMLPGRDGLTLCRAIRGFSNVPIIMVTARTDEIDRLLGLE 134

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNN--RAETGPIRVFSDGR-DPEVQGEVFPL 149
            G DD + KP   RE++ARV  + RR +  +     +  P  +    R      G    L
Sbjct: 135 IGADDYICKPYSPREVVARVKTLLRRCRWQHEPLPGDALPALLIDQNRYQASYLGRHLEL 194

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              E R+L+ L A  G+  ++ Q+   +Y  +   V +  ++SHI  LR+KL
Sbjct: 195 TPAEFRLLKTLSAEPGRVFSREQLLDHLYDDY-RVVTDRTIDSHIKNLRRKL 245


>gi|296138775|ref|YP_003646018.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296026909|gb|ADG77679.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 230

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 9/152 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +RA    P + +    +    +DF    D+G DD V KP    E++AR  A+ R
Sbjct: 62  LEVCREVRAAR--PEVAVLMLTARTDEMDFVVGLDAGADDYVGKPFRMFELMARTRALLR 119

Query: 118 RLKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R   + +     + G IR+ +  R   V G    L  +E  +L +LM   G+ +++  I 
Sbjct: 120 RSAPAPDTGDVLDAGGIRLDAKARRVTVDGSDVALANKEFELLRFLMERAGQLLSREDIL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           + ++G  D       ++ HIS LR+K+ +  G
Sbjct: 180 ADVWGDSD-LRGSKTLDMHISWLRRKIGDDTG 210


>gi|284053175|ref|ZP_06383385.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291569177|dbj|BAI91449.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 246

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 12/158 (7%)

Query: 52  FLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
            LI      L+L R++R H Q VP++ I +  +      + ++G DD + KP   RE +A
Sbjct: 72  LLILDATNGLDLCRMLRHHGQSVPILIIGNKENANNCAFYLEAGADDYLTKPFSIREFIA 131

Query: 111 RVAAIYRRLKVSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
           R  A+ RR ++       GP+        ++ +     ++GE   L  ++ R+LE  ++ 
Sbjct: 132 RCRALIRRQRIGKF---PGPVMLQYKDIILYQEECRVIIRGEEVQLSPKQFRLLELFLSY 188

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             +  ++ Q+   I+G  D   +   V+ HI  LR+KL
Sbjct: 189 PRRVWSREQLLDVIWGT-DFVGDSKTVDVHIRWLREKL 225


>gi|266620404|ref|ZP_06113339.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288867981|gb|EFD00280.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 231

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 14/210 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DD+ +V+   I L G+    ++ ++  E  + L+++ + D+  ++  + G     
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFTVIKAYDGYEALDLLENN-QVDLMIVDVMMPGLDGIR 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
             L   +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 63  TTLK--VRETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 120

Query: 120 KVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++ N   +T       G + +  D ++  V GE+  L   E  IL  L+ N GK  +  +
Sbjct: 121 QLGNMNQQTAGQVYKCGGLAINDDNKEVTVDGELIKLTPIEYNILLLLVKNAGKVFSIDE 180

Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKL 201
           I+  I+   +EA+  +N V  HI  +R+K+
Sbjct: 181 IYEQIWN--EEAIGADNTVAVHIRHIREKI 208


>gi|237720754|ref|ZP_04551235.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|229449589|gb|EEO55380.1| two-component system response regulator [Bacteroides sp. 2_2_4]
          Length = 228

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR  +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR-- 119

Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V+ N  E     V++D R      D E  G    L  +E  +L Y++ N  + +++ +I 
Sbjct: 120 VAGNAQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIA 179

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++   FD     N ++ +I+ LRKK+        + +K  +G+
Sbjct: 180 EKVWNTHFDTGT--NFIDVYINYLRKKIDRDFEPKLIHTKAGMGF 222


>gi|297588714|ref|ZP_06947357.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297574087|gb|EFH92808.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 239

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L +  R  S  P+I IS   + +  ++  D+G DD + KP +  E+LARV +  RRL 
Sbjct: 64  IDLIKKFREFSTTPIIVISARSNDEDKIEALDAGADDFLTKPFNVEELLARVRSTIRRLN 123

Query: 121 VS-NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            S NNR       E G I++    R   V+GE   L   E  +L  L  N GK +    I
Sbjct: 124 YSENNRIDNNVTFENGDIKIDYPSRSVFVKGEEIHLMPIEYSLLCLLSKNIGKVLTHQYI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              I+  + ++ + + +  +++ LRKK+
Sbjct: 184 LKTIWVNYLDS-DLSSLRVYMTSLRKKI 210


>gi|225375196|ref|ZP_03752417.1| hypothetical protein ROSEINA2194_00821 [Roseburia inulinivorans DSM
           16841]
 gi|225212976|gb|EEG95330.1| hypothetical protein ROSEINA2194_00821 [Roseburia inulinivorans DSM
           16841]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R +R +    +I ++        +  +++G DD + KP     +L ++ A +RR  
Sbjct: 61  LEFVRWMRCNYNTYIICLTALDQEMDQVVGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++
Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            L  + V+EN +  +I +LR+K+ +     PV  K   G    WN
Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-TPVYIKNIRGLGYIWN 224


>gi|118586652|ref|ZP_01544091.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|118432904|gb|EAV39631.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
          Length = 241

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E  + +R  +  +P++ ++    ++T    F  G+DD + KPI   E+  R++A+ RR 
Sbjct: 78  VEFAKTVRQLNENIPILFVTARDDIKTKKAGFRVGIDDYLVKPIDLDELKLRISAVLRRA 137

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +S N + E G + + S+     + G   PL  RE  IL  +++  G+  ++ ++    +
Sbjct: 138 NISQNQKIEIGNLLLKSEEISASINGVPIPLTVREFNILFKMLSFAGRAFSRAELLDDFW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                A     V+ +I+KLR+K ++   F+ + +   LGY
Sbjct: 198 DTESNA-SLRAVDVYITKLREKFKSTNAFE-IKTIHGLGY 235


>gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 251

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ ++   
Sbjct: 75  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIEKTSTSG 134

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G IR+ ++ R      E   L   E  +LE L+   G+  ++ +I   ++G
Sbjct: 135 IPSSGVIQVGNIRIDTNKRQVYKGDERIRLTGMEFMLLELLVGRSGEPFSRAEILEQVWG 194

Query: 180 LFDE-AVEENVVESHISKLRKKL 201
              E  V+  VV+ HIS+LR KL
Sbjct: 195 YTPERHVDTRVVDVHISRLRAKL 217


>gi|34762634|ref|ZP_00143627.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237741605|ref|ZP_04572086.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
 gi|256844930|ref|ZP_05550388.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294785787|ref|ZP_06751075.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
 gi|27887714|gb|EAA24790.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229429253|gb|EEO39465.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
 gi|256718489|gb|EEU32044.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294487501|gb|EFG34863.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA+ ++  ++ ++   +++  +   D G DD + KP    E+LAR+ AI RR K
Sbjct: 61  EVVKHLRANKNETAVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIIRR-K 119

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N  N  +   + V +  +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++
Sbjct: 120 YGNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               E  E N+++  I  +RKK+        + +KR LGY
Sbjct: 180 DYAYEG-ESNIIDVLIKNIRKKIDLGDSKPLIHTKRGLGY 218


>gi|319939572|ref|ZP_08013931.1| response regulator Rr1 [Streptococcus anginosus 1_2_62CV]
 gi|319811161|gb|EFW07467.1| response regulator Rr1 [Streptococcus anginosus 1_2_62CV]
          Length = 228

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP  +  +LA+V  + RR        
Sbjct: 67  IRKISKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDNNVLLAKVQGLLRRSYEFGTDQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + +     D   +GEV  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYHGVILNLKSMDMVYEGEVITLTKNEFQILRVLFEHSGSIVARDDLMKELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      + +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEAGLKNFIETKKGIGYGL 222


>gi|313499205|gb|ADR60571.1| DNA-binding response regulator [Pseudomonas putida BIRD-1]
          Length = 220

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 15/167 (8%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL R +RA    +P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             S  RA+   I       DP  Q     G    L  +E  +L  L+A  GK   + ++ 
Sbjct: 119 --SVGRAKV-LIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLT 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +YG +DE  E N +E +I  LRKKL N L    + + R +GY ++
Sbjct: 176 QLLYG-WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217


>gi|311693076|gb|ADP95949.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 221

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 18/224 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG        G S++   +   +E      +ED  A+   L       L
Sbjct: 3   LLLVEDDRLLADGLSGQLEKAGFSVD--TTYTAKEAAILGEQEDYRAVILDLGLPDGNGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R H    P++ ++        ++   +G DD + KP    E++AR+ AI RR +
Sbjct: 61  DVLRKWRTHQIGCPVLILTARGDWHDKVEGLKAGADDYLAKPFQTEELIARLNAIVRRSE 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V   R E    R      D    G    L   E R+L  LM+  G   +K Q+ 
Sbjct: 121 GRIHSMVKAGRFELDENRQSLKSED----GTEHSLTGTEFRLLRCLMSRPGHVFSKEQLM 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             +Y L D    ENV+E++I +LRK     +G D + ++R  GY
Sbjct: 177 EQLYNLNDTP-NENVIEAYIRRLRK----LVGNDTIATRRGQGY 215


>gi|326773621|ref|ZP_08232904.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326636851|gb|EGE37754.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 219

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 23/158 (14%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P+I ++   S+   +   + G DD + KP    E+LAR+       +V      TGP +
Sbjct: 74  TPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARI-------RVRLRPDATGPDQ 126

Query: 133 VFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           +    RD           ++G    L  RE  + E  M + G+ +++ Q+ SA++GL FD
Sbjct: 127 MRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAETFMRHPGQVLSREQLLSAVWGLDFD 186

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                NVVE ++S     LRNKLG   V++ R +GY +
Sbjct: 187 PG--SNVVEVYVS----YLRNKLGRQRVETVRGMGYRL 218


>gi|300088634|ref|YP_003759156.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528367|gb|ADJ26835.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 223

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 21/165 (12%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           +A    P++ ++   + Q      ++G DD + KP  + E+ AR+ A+ RR +      +
Sbjct: 68  KAGVTTPILMLTARGTAQEKAQGLNTGADDYLAKPFEYNELFARICALGRRPR------Q 121

Query: 128 TGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             P+ +  DG   ++       +GE   L   E R+LE    N    + + +I   I   
Sbjct: 122 MAPLVIEIDGITIDITAHRVSLKGETVELTANEFRVLELFANNPNVIIERVRIEEYISTT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD----PVDSKRFLGYSID 221
            D+  + NVV+  I    K+LR KLG+D    P+ + R  GY ++
Sbjct: 182 HDKDFKSNVVDVII----KRLREKLGWDPQTGPIQTVRGCGYRLN 222


>gi|291525415|emb|CBK91002.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528479|emb|CBK94065.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 217

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 1/129 (0%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I ++   +L   L    SG +D + KP    E+LARV  + RR      +     I 
Sbjct: 72  IPVIFLTAKATLDDRLRGLTSGAEDYMVKPFEIVELLARVNIVLRRYNKMEQQLTFKDIA 131

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           + +  ++    G+   L  +E  +LE LM N+   + + +I+  I+G  + +VE   ++ 
Sbjct: 132 IDTKNQNVSKAGKHIELTPKEFELLELLMRNKNITLFREKIYEEIWG-SEYSVESRTLDL 190

Query: 193 HISKLRKKL 201
           HI +LRKKL
Sbjct: 191 HIQRLRKKL 199


>gi|228967929|ref|ZP_04128940.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791796|gb|EEM39387.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    K S  
Sbjct: 66  RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125

Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I+V    R   V      L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 PLENEDDTLSIHGIQVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +G ++ A ++  V SHI  LR KL  K  +
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|228942259|ref|ZP_04104798.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975189|ref|ZP_04135747.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981827|ref|ZP_04142122.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228777939|gb|EEM26211.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228784468|gb|EEM32489.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817303|gb|EEM63389.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942914|gb|AEA18810.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 225

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKTTPIIIVTDNVSSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  GE   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQKEINFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202
           ++G ++  V  NVV+ +I  +RKKL+
Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLK 205


>gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 232

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP   RE+LAR+ A+ RR K      E   T  I +  + R+  +  +   L 
Sbjct: 99  GADDYMTKPFSIRELLARIKAVLRRTKSLGGSEEIFKTNGILINFERREVLISDKKIDLT 158

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +E  +LE L+ NRGK + +  +   I+G ++   E   V+ HI  LRKK+
Sbjct: 159 LKEFELLEILVKNRGKILTRETLLDKIWG-YEYVGETRTVDVHIRYLRKKI 208


>gi|190150575|ref|YP_001969100.1| phosphate regulon transcriptional regulator PhoB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307263920|ref|ZP_07545524.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|189915706|gb|ACE61958.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306870785|gb|EFN02525.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 213

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +Q+P++ ++   S    +   ++G DD V KP   + ++AR+ ++ RR   +N+      
Sbjct: 58  AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDD 117

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +  + +    Q +   L   E ++L + M +  K  ++ Q+   ++G  D  VE+  V
Sbjct: 118 LILVQNAKRITFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 176

Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +S+I +LRK L    GF+  V + R  GY
Sbjct: 177 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 204


>gi|168259535|ref|ZP_02681508.1| response regulator [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205350765|gb|EDZ37396.1| response regulator [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 240

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K    +    AE+ P+ +          G+   L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|270308724|ref|YP_003330782.1| DNA-binding response regulator [Dehalococcoides sp. VS]
 gi|270154616|gb|ACZ62454.1| DNA-binding response regulator [Dehalococcoides sp. VS]
          Length = 225

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           IRA S +P++ ++   + Q     F+ G DD + KP    E++ARV ++ +RL  +N   
Sbjct: 68  IRAFSSLPILILTARNNEQEIFTAFELGADDYITKPFQPLELIARVKSLLKRLNRTNQDL 127

Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + G  +  +  ++   +  +  L   E ++L  L+   G  V+   I  +I+G  +E 
Sbjct: 128 GIKYGHWKFGTSLKEISYKNNIINLTITEGQLLHILLTKGGSIVSYADISKSIWGR-NEY 186

Query: 185 VEENVVESHISKLRKKL 201
             +  +++HI ++R+KL
Sbjct: 187 YAKETIKTHIMRIRQKL 203


>gi|16765461|ref|NP_461076.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56412969|ref|YP_150044.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161613184|ref|YP_001587149.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167991049|ref|ZP_02572148.1| response regulator [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168229457|ref|ZP_02654515.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168236293|ref|ZP_02661351.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168242208|ref|ZP_02667140.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194451571|ref|YP_002046183.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194472565|ref|ZP_03078549.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194737843|ref|YP_002115222.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250857|ref|YP_002147092.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197264591|ref|ZP_03164665.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361899|ref|YP_002141535.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198242249|ref|YP_002216218.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200389136|ref|ZP_03215748.1| response regulator [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929186|ref|ZP_03220329.1| response regulator [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205353273|ref|YP_002227074.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207857567|ref|YP_002244218.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|238912561|ref|ZP_04656398.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16420665|gb|AAL21035.1| response regulator in two-component regulatory system with BaeS
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56127226|gb|AAV76732.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161362548|gb|ABX66316.1| hypothetical protein SPAB_00893 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409875|gb|ACF70094.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458929|gb|EDX47768.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194713345|gb|ACF92566.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197093375|emb|CAR58825.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214560|gb|ACH51957.1| DNA-binding response regulator BaeR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242846|gb|EDY25466.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197290555|gb|EDY29910.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936765|gb|ACH74098.1| response regulator [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199606234|gb|EDZ04779.1| response regulator [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321730|gb|EDZ06929.1| response regulator [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205273054|emb|CAR38003.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205330587|gb|EDZ17351.1| response regulator [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335782|gb|EDZ22546.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205338415|gb|EDZ25179.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|206709370|emb|CAR33710.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261247346|emb|CBG25171.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994189|gb|ACY89074.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158692|emb|CBW18204.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913123|dbj|BAJ37097.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224781|gb|EFX49844.1| Response regulator BaeR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615161|gb|EFY12083.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322617752|gb|EFY14648.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624654|gb|EFY21485.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626895|gb|EFY23691.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322634081|gb|EFY30817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635728|gb|EFY32438.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640267|gb|EFY36930.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646315|gb|EFY42828.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649408|gb|EFY45844.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656528|gb|EFY52817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661504|gb|EFY57728.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322665608|gb|EFY61792.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667132|gb|EFY63299.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671138|gb|EFY67266.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675221|gb|EFY71298.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680830|gb|EFY76865.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687005|gb|EFY82982.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323130456|gb|ADX17886.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192769|gb|EFZ77996.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198799|gb|EFZ83898.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204931|gb|EFZ89922.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208234|gb|EFZ93178.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210956|gb|EFZ95817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215741|gb|EGA00484.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323223394|gb|EGA07726.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227221|gb|EGA11392.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231186|gb|EGA15301.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233621|gb|EGA17713.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237691|gb|EGA21751.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245674|gb|EGA29668.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247751|gb|EGA31693.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252967|gb|EGA36800.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256769|gb|EGA40494.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323259475|gb|EGA43110.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323268258|gb|EGA51733.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271952|gb|EGA55368.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326623967|gb|EGE30312.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628362|gb|EGE34705.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989065|gb|AEF08048.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 240

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K    +    AE+ P+ +          G+   L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|15643165|ref|NP_228209.1| response regulator [Thermotoga maritima MSB8]
 gi|4980903|gb|AAD35484.1|AE001719_10 response regulator [Thermotoga maritima MSB8]
          Length = 225

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 2/148 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130
             P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR   S + +   G 
Sbjct: 74  NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGD 133

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + +  +      +   L ++E +ILEYL+ N+ + V K ++   ++  FD+ V  +V+
Sbjct: 134 LILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS-FDDEVFSDVL 192

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            SHI  LRKK+        + + R +GY
Sbjct: 193 RSHIKNLRKKVDKGFKKKIIHTVRGIGY 220


>gi|317472867|ref|ZP_07932175.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316899667|gb|EFV21673.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL + IR   +  P++ ++    ++  +   D G DD + KP    E++ARV  + RR 
Sbjct: 60  LELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRK 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + +NR   G + +  + ++     +   L  +E  +LEY++ N+   +++ QI    +
Sbjct: 120 PALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D     NVV+ +I  LRKK+    G   + + R +GY +
Sbjct: 180 N-YDFEGGSNVVDVYIRYLRKKIDEGFGCKLIHTVRGVGYVL 220


>gi|300088402|ref|YP_003758924.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528135|gb|ADJ26603.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 231

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP----IRVFSDGRDPE----- 141
            + G DD ++KP   RE++ARV A+ RRL+++       P    +R+     D E     
Sbjct: 91  LEMGADDYLSKPFSMRELVARVKAMLRRLEMTAGTEAGIPAGLTLRLGGLELDAERHRLT 150

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           V G+   L  RE  +L YLM NRG+  ++  +   ++G +D   +E  V+ H+  LR+K+
Sbjct: 151 VGGQEVELSPREFDLLAYLMNNRGRVFSRQSLVDRVWG-YDYPGDERTVDVHVRWLRQKI 209


>gi|270264670|ref|ZP_06192935.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041353|gb|EFA14452.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 238

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 2/150 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L + R +R  + VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 59  LMLPGSDGLTVCRELRRFTDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 118

Query: 113 AAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             I RR  +   N+ E   + +         QG++  L   E R+L+ L +  G   ++ 
Sbjct: 119 KTILRRCYRPLENQQEETQLHIDEPRFQASYQGQMLDLTPAEFRLLKTLASQPGNVFSRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 179 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKL 207


>gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 5/178 (2%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           DV  ++  L G+ G +VL   R     + V ++   D    +T  D FD G DD + KP 
Sbjct: 46  DVVILDIMLPGRSGYEVLRRMRSNNVWTPVLMLTAKDGEYDET--DAFDLGADDYLTKPF 103

Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMA 162
             R ++AR+ A+ RR         T         R    +G     L  RE  +LE+LM 
Sbjct: 104 SFRVLVARLRALVRRGAPERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMR 163

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N+   V K  I + ++        +NVVE ++  LR+K+    G + +++ R +GY +
Sbjct: 164 NKDVVVTKADILANVWDAHHHG-PDNVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220


>gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 226

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 23/218 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  L   DG           EE  Q   +E V      ++  G+   EL R IR 
Sbjct: 22  LAKEGYNVLACVDG-----------EEASQLLEQESVQLAIVDVMMPGKNGWELCREIRE 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
              +P+I ++    ++     F +G DD + KP    E+L R+ A+ RR ++ + +    
Sbjct: 71  FYDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALLRRYQMVSKQ---- 126

Query: 130 PIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            I V +D          +V+ E+  LP +E  +L  L +   +   + Q+   ++G  D 
Sbjct: 127 -IIVLNDTVIDRISHVVKVKEELIHLPLKEFELLAQLASFPDRIFTRDQLLELVWG-GDT 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +   ++ HI +LR+K   K     + + R LGY ++
Sbjct: 185 ESDSRTIDVHIKRLREKFTEKTNDFVISTVRGLGYKLE 222


>gi|225018020|ref|ZP_03707212.1| hypothetical protein CLOSTMETH_01956 [Clostridium methylpentosum
           DSM 5476]
 gi|224949226|gb|EEG30435.1| hypothetical protein CLOSTMETH_01956 [Clostridium methylpentosum
           DSM 5476]
          Length = 233

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 102/209 (48%), Gaps = 12/209 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V+ DDRA+V    I L  ++   ++ ++ L+  E L  +    +  +   ++ K + +
Sbjct: 6   VLVVDDDRAIVDSVAIFLNNENIGVIKAYDGLDALEQLSENQVHLI--LMDIMMPKLDGI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
             + +I R    +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 64  QAMLKI-REKRNIPIILVSAKTEDTDKIIGLNMGADDYITKPYNPLELVARVKSQLRRYT 122

Query: 120 KVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++ N+R +T       G + + +D +   V GE   L   E RI E LM N+ +  +  +
Sbjct: 123 RLGNDRNQTASAILRTGGLELNTDTKQLTVDGEFVKLTPIEYRITELLMRNQNRVFSIGE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I+  ++      V +N+V  HI ++R+K+
Sbjct: 183 IYEQVWQEPCYNV-DNIVAVHIRRIREKI 210


>gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
 gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
          Length = 240

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR         +++ +   T   G +++  D  +  +
Sbjct: 99  GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 158

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 159 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 216


>gi|144898432|emb|CAM75296.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Magnetospirillum gryphiswaldense MSR-1]
          Length = 225

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 8/188 (4%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGV 95
           +L ++ R D   ++  L   G   L + + IR A +  P++ +S    +   +    +G 
Sbjct: 38  FLATTERYDSMIVDRML--PGVDGLTIVQTIRGAGNTTPVLILSALGKVDDRVKGLKAGG 95

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           DD + KP    E+LAR+ A+ RR   S    R +   + +    R     G    L  RE
Sbjct: 96  DDYLVKPYAFAELLARIEALGRRTSASQPETRLKVEDLEMDLLARTVTRSGRDIDLQPRE 155

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
            R+LEYL+ + G+ V +T +   ++   FD   + N+++ HIS+LR+K+        + +
Sbjct: 156 FRLLEYLLRHAGQVVTRTMLLENVWEYHFDP--QTNLIDVHISRLRQKVDKDFDQALIHT 213

Query: 213 KRFLGYSI 220
            R  GY++
Sbjct: 214 VRGAGYTL 221


>gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104]
 gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 5/178 (2%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           DV  ++  L G+ G +VL   R     + V ++   D    +T  D FD G DD + KP 
Sbjct: 46  DVVILDIMLPGRSGYEVLRRMRSNNVWTPVLMLTAKDGEYDET--DAFDLGADDYLTKPF 103

Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMA 162
             R ++AR+ A+ RR         T         R    +G     L  RE  +LE+LM 
Sbjct: 104 SFRVLVARLRALVRRGAPERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMR 163

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N+   V K  I + ++        +NVVE ++  LR+K+    G + +++ R +GY +
Sbjct: 164 NKDVVVTKADILANVWDAHHHG-PDNVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220


>gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
 gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
          Length = 235

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR  
Sbjct: 62  VEVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQN 121

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S+N  + G + +F D      + E   L  RE  +L YL  + G+ + +  
Sbjct: 122 TAAPAEEESSSNEIQIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 229


>gi|297539212|ref|YP_003674981.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297258559|gb|ADI30404.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 3/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ ++IRA S +P++ ++        +   + G DD V KP   RE++ARV AI RR  +
Sbjct: 63  DVCKLIRAESNIPILFLTARNHEIDRIVGLEIGADDYVTKPFSPREVVARVNAILRRTAL 122

Query: 122 SNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      V  +     + +G++  L R E  +L+ L+    +  ++ Q+   ++ +
Sbjct: 123 KQESQHKNVSFVVDELANRIQYRGQLLDLTRYEFLLLKTLIQQPQRVFSRNQLMDIVW-V 181

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             E   E  V++HI  LR KLR   +  + + + R +GYS+
Sbjct: 182 NAENTLERTVDAHIKTLRAKLRAVDMQSEAIITHRGMGYSL 222


>gi|296393295|ref|YP_003658179.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296180442|gb|ADG97348.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 250

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 27/163 (16%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  +++P+I +S        +D  D+G DD V KP    E+LAR+ A  RR   +NN+ 
Sbjct: 67  LRGWTKIPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRR--GANNQP 124

Query: 127 ETGPI-------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              P+             +V  D  D EV      L   E  +LE L+ N+GK V++ +I
Sbjct: 125 GGEPVVAADSFVVDLVAKKVTKD--DKEVH-----LTPTEWGVLELLVRNQGKLVSQKEI 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            S ++G      E + +  ++++LR+KL      DP + +  L
Sbjct: 178 LSEVWG-PSYKTETHYLRVYLAQLRRKLEA----DPANPRHLL 215


>gi|268611060|ref|ZP_06144787.1| response regulator [Ruminococcus flavefaciens FD-1]
          Length = 226

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R     P++ +S     Q+ L  + +G DD + KP     +LA++ A+ +R  V     
Sbjct: 67  LRKKYDTPVLMMSARDDDQSKLTGYGTGADDYITKPFSIPVLLAKIRALMKRAVVKPENH 126

Query: 127 ETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           E     +  D ++  V+  G V  L  +E  +L  +M ++G+ + K ++F  ++G FD  
Sbjct: 127 EISGCGITLDMQNHVVRKNGTVIKLNVKEYELLRTMMEHQGEIMDKNKLFDTVWG-FDCF 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSK 213
            E + V  HI  LR+K+ +    DP + K
Sbjct: 186 SEPSTVSVHIRWLREKIED----DPNEPK 210


>gi|261206781|ref|ZP_05921472.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566983|ref|ZP_06447385.1| two-component response regulator colocalized with HrtAB transporter
           [Enterococcus faecium D344SRF]
 gi|294613962|ref|ZP_06693894.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|260078911|gb|EEW66611.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161218|gb|EFD09116.1| two-component response regulator colocalized with HrtAB transporter
           [Enterococcus faecium D344SRF]
 gi|291593156|gb|EFF24733.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A   +P++ I+     +     F  G DD + KPI   E++ RV A+ RR K++ +   T
Sbjct: 70  ARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKINYSSILT 129

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G  ++  D          F LP++E  +L  L++   K   + Q+   I+GL D   EE
Sbjct: 130 IGQTKLELDTYTVVQNQHSFILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL-DTNTEE 188

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++ HI +LR +      F  + + R LGY
Sbjct: 189 RTIDVHIKRLRTRFEKTEDFQII-TVRGLGY 218


>gi|238917552|ref|YP_002931069.1| two-component system, OmpR family, phosphate regulon response
           regulator PhoB [Eubacterium eligens ATCC 27750]
 gi|238872912|gb|ACR72622.1| two-component system, OmpR family, phosphate regulon response
           regulator PhoB [Eubacterium eligens ATCC 27750]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 4/166 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +++  R+  A  ++P+I ++   +    +   + G DD + KP    E++ RV A+ 
Sbjct: 60  GYDIIKKLRLNSATKRLPVIMVTAKSTELDMIKGLEDGADDYIKKPFSVMELITRVKALL 119

Query: 117 RRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR +       + G I +  +     V G+   L  +E  +L YLMAN+   +++  I  
Sbjct: 120 RRTETDEAGVLDVGEIELNHERHVVTVSGKQVELTFKEYELLRYLMANKNIVLSRDSIVL 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G   E  E   V+ HI  LR+KL +      + + R +GY I+
Sbjct: 180 KVWGTEFEG-ESRTVDMHIKTLRQKLGD--AGSRIRTVRNVGYVIE 222


>gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 233

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     +
Sbjct: 73  IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSI 132

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N++  E G + V +D     V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 133 EHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIYEAVWK 192

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 193 EVFYKS--DNTVMVHITKIRDKI 213


>gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 237

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 15/170 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++ +  S+ P+I ++   + +  +     G DD + KP    E+L+RV+A+ RR    
Sbjct: 65  LSKLRQKGSKTPVIILTARNAEEEVVQGLKFGADDYITKPFGVAELLSRVSAVLRR--TG 122

Query: 123 NNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           N   E             G + ++ +  +  +  +  PL  +E  +L YL+   G  V +
Sbjct: 123 NKEVEDTGTHSGDKVITVGDLFIYPEKYEVVLNNQSIPLRPKEFEVLLYLVQRLGIVVTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + + ++G FD    +  V+ H+S LRKKL        ++S R +GY +
Sbjct: 183 DDLMNVVWG-FDYIGGQRTVDVHVSSLRKKLEMNQQSVQIESIRGVGYKL 231


>gi|145593966|ref|YP_001158263.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303303|gb|ABP53885.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 251

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNN 124
           R   ++ ++ ++   SL+  L   + G DD + KP    E++ARV A+ RRL     ++N
Sbjct: 93  RGLPELAVVFLTAKDSLEDRLTGLNLGGDDYITKPFSVAEVVARVNAVLRRLGGRPSASN 152

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           R     + +  D       G    L   E R+L +++ N G+ ++K QI + ++  +D  
Sbjct: 153 RLAVADLELDEDAHTVTRAGTPVELSPTEFRLLRHMLENAGRVLSKQQILAQVWQ-YDFP 211

Query: 185 VEENVVESHISKLRKKL 201
            +  VVE  +S+LR+K+
Sbjct: 212 GDPGVVEKFVSQLRRKV 228


>gi|15802560|ref|NP_288587.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 EDL933]
 gi|12516285|gb|AAG57142.1|AE005434_6 transcriptional response regulatory protein (sensor BaeS)
           [Escherichia coli O157:H7 str. EDL933]
          Length = 240

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K    +    AE+ P+ +         +G++  L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQQQDAES-PLIIDEXRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|109897848|ref|YP_661103.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109700129|gb|ABG40049.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 230

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 22/202 (10%)

Query: 22  DGVSLEGF------NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPL 75
           D +++EGF      N  E E+ +++    D   ++  L GK    L + + +R  SQVP+
Sbjct: 22  DFLTIEGFATQVVHNGDEAEDAIRTKT-PDCVILDLMLPGKDG--LSICKDVRKFSQVPI 78

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF- 134
           I ++        L     G DD V KP   RE++ARV AI RR   +   ++   I  F 
Sbjct: 79  IMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQAILRRATFAAPSSDETCILTFK 138

Query: 135 -----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA--VEE 187
                ++  + E+  +V  L   E R+L+ LM+  G   ++  +  + Y   ++A  V  
Sbjct: 139 HISLNTERFECEINKQVTELTPVEFRLLKTLMSRPGTVFSRESLMQSCY---EDARIVSN 195

Query: 188 NVVESHISKLRKKLRNKLGFDP 209
             ++SH+  LR K+   L  DP
Sbjct: 196 RTIDSHMKNLRNKV--ALTNDP 215


>gi|329736115|gb|EGG72388.1| putative transcriptional regulatory protein WalR [Staphylococcus
           epidermidis VCU045]
          Length = 219

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 23/198 (11%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D Y A  G+D V L       +EE        D+  ++  L G+    +E+ R +R   +
Sbjct: 28  DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKYE 73

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124
           +P+I ++   S    +   + G DD V KP   RE++ARV A  RR        +  + N
Sbjct: 74  MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQEVSGATN 133

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 I ++ D    + +GE   L  RE  +  YL  + G+ + +  +   ++G +D  
Sbjct: 134 EITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDYF 192

Query: 185 VEENVVESHISKLRKKLR 202
            +   V+  I +LR+KL+
Sbjct: 193 GDVRTVDVTIRRLREKLK 210


>gi|332160894|ref|YP_004297471.1| two-component regulatory protein response regulator KdpE [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604799|emb|CBY26297.1| DNA-binding response regulator KdpE [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665124|gb|ADZ41768.1| two-component regulatory protein response regulator KdpE [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862950|emb|CBX73085.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           enterocolitica W22703]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 20/159 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I +S   S +  +   D+G DD ++KP    E+LARV    RR    +  +
Sbjct: 71  LRQWSSIPIIVLSARSSEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGGS 127

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  P+  FSD       R     G    L   E R+L  L+AN GK + + Q+ + ++G 
Sbjct: 128 QESPLINFSDISVNLINRQVTRAGIDLHLTPIEFRLLSALLANAGKVITQRQLLNQVWG- 186

Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216
                  N VE H   LR     LR KL  DP   K  L
Sbjct: 187 ------PNYVE-HSHYLRIYMGHLRQKLETDPTRPKHLL 218


>gi|317490524|ref|ZP_07949002.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|316910375|gb|EFV32006.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 232

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 69/144 (47%), Gaps = 7/144 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S VP+I ++        +  F+ G DD V KP   RE++ARV A  RR   ++ 
Sbjct: 68  RELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRRATSNDV 127

Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +E GP       I +        + GE   L  +E  IL  LM ++G+ VA   +F ++
Sbjct: 128 ASEDGPGMLECCGITLDESAYTATLHGEALSLTPKEFAILACLMRDQGRPVASRDLFESV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G    A   N V  HI  LRKKL
Sbjct: 188 WGEIANAQSNNTVMVHIRHLRKKL 211


>gi|307261733|ref|ZP_07543399.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306868551|gb|EFN00362.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 213

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +Q+P++ ++   S    +   ++G DD V KP   + ++AR+ A+ RR   +N+      
Sbjct: 58  AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIEALLRRTYQNNDIINIDD 117

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +  + +    Q +   L   E ++L + M +  K  ++ Q+   ++G  D  VE+  V
Sbjct: 118 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 176

Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +S+I +LRK L    GF+  V + R  GY
Sbjct: 177 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 204


>gi|261418620|ref|YP_003252302.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319765436|ref|YP_004130937.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261375077|gb|ACX77820.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317110302|gb|ADU92794.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 232

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 10/185 (5%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           DV  I   ++ +G   +EL R+IR     P++ +S     +  +     G DD + KP  
Sbjct: 46  DVDLIILDIMMEGIDGMELCRMIRDRVDCPILFVSAKTLEEDKVQALSIGGDDYITKPFS 105

Query: 105 HREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYL 160
            +E+ AR+ +  RR +   SN R       +  D    EV  +G   PL ++E  I++ L
Sbjct: 106 LKELKARIDSHLRREERIRSNERYLLSSKNMTIDLLANEVFCKGRKLPLTKKEYEIVKLL 165

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGY 218
           M N+    +K +IF  ++G+  ++  + V ES I  +RKK++     DP  S  +   G 
Sbjct: 166 MLNQKVVFSKERIFERVWGIDSDSQLDAVTES-IKNIRKKIK---AVDPETSYIQTLYGL 221

Query: 219 SIDWN 223
              W+
Sbjct: 222 GYKWD 226


>gi|254467591|ref|ZP_05081000.1| two-component response regulator [Rhodobacterales bacterium Y4I]
 gi|206684339|gb|EDZ44823.1| two-component response regulator [Rhodobacterales bacterium Y4I]
          Length = 223

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 9/191 (4%)

Query: 35  EEWLQSSARE-DVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFD 92
           E  LQ++A E DV  I+  L   G   L L + +R A  + P I ++    +   +D  +
Sbjct: 35  EGLLQATAAEYDVLIIDRML--PGLDGLSLIKTLRGAGVRTPAIMLTALSGVNDRIDGLE 92

Query: 93  SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           +G DD + KP    E+ ARVAA+ RR  L+        G + +    R     G+   L 
Sbjct: 93  AGADDYLVKPFAFGELAARVAALARRPGLQEQETVLRAGDLEMDLIRRKVTRAGQEIDLL 152

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209
            RE R+LE+L+  +G+   +T +  A++ + FD   + NVVE+HIS+LR K+    G + 
Sbjct: 153 PREFRLLEHLLRRKGRVQTRTMLLEAVWDISFDP--QTNVVETHISRLRAKVDKPFGTEL 210

Query: 210 VDSKRFLGYSI 220
           +++ R  GY I
Sbjct: 211 IETVRGAGYRI 221


>gi|154503687|ref|ZP_02040747.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
 gi|153795787|gb|EDN78207.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
          Length = 311

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR     P+I ++ Y      +  F +G DD + KP  + E+L RV AI RR       A
Sbjct: 149 IRKQFNAPIIFLTAYSGESDKVMGFSAGADDYIVKPFSNMELLMRVKAILRRSARGTAPA 208

Query: 127 ET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G + +  + +    QGEV  L   E +ILE L+ ++ K  +   I+ +I+
Sbjct: 209 QEEKKSHIPFGDLILDLECQSVLRQGEVIVLTYTEFKILELLVTHKKKIYSLENIYQSIW 268

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
              ++AV ++ +  HI  +RKKL +
Sbjct: 269 E--EDAVGDSAIMVHIKNIRKKLED 291


>gi|90422897|ref|YP_531267.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104911|gb|ABD86948.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 241

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 20/174 (11%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   +L R IR  S VP++ ++     ++ ++    G DD V KP   RE+L R+  I 
Sbjct: 74  GETGFDLARFIRTTSSVPIVMLTARHEAESRIEGLQLGADDYVAKPFEPRELLLRIGNIL 133

Query: 117 RR-LKVSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171
           +R + V+  + E+   GP  V+   R    QG E+  L  RER +L  L A+ G+ V + 
Sbjct: 134 KRAMPVAAVKQESISFGPY-VYHLERGELRQGEEIIHLTDRERDMLRVLAASPGETVPRG 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSI 220
           ++           V E  V+  I++LR+K+      DP +     + R +GY +
Sbjct: 193 ELTGG-----GGTVNERAVDVQINRLRRKIEQ----DPANPLFLQAVRGIGYRL 237


>gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
 gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
          Length = 235

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 121 -VSNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            VS +  E+          G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LVSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213


>gi|309951515|gb|ADO95181.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium sp. M14]
          Length = 230

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%)

Query: 57  GEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R +RA     ++P+I ++        +    +G DD + KP    E++ARV 
Sbjct: 58  GVSGIELCRRLRARPNTERLPVIMLTARGEETERVRGLATGADDYLVKPFSTPELMARVR 117

Query: 114 AIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR K +  ++      I +  +      +     L   E R+L++LMA+ G+  ++ 
Sbjct: 118 ALLRRSKPALISSILRYADIELDRESHRVHRERREVRLGPTEFRLLDFLMASPGRVFSRA 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           Q+   ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS+D
Sbjct: 178 QLLDGVWG-HDLYVDERTVDVHVGRLRKALNFANKPDLIRTVRGAGYSMD 226


>gi|300867618|ref|ZP_07112266.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300334379|emb|CBN57436.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 233

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 23/205 (11%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L ++GY     D+G +   F          +    D+  ++  L GK    L + + +
Sbjct: 18  RVLTREGYEVDVADNGATGSEF---------ATQGNYDLLILDWMLPGK--TGLAICQKL 66

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           R+  +  P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  +     
Sbjct: 67  RSEGRATPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRPSILETGS 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           SN   ++  ++V     D E Q     G    L  +E ++LEYLM + G+ +   QI   
Sbjct: 127 SNFSGDSNRLQVADLELDFENQLAYRRGRTIDLSEKECQLLEYLMRHPGQLLTHEQIHQY 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++    E    NV+ + I  LR+K+
Sbjct: 187 LWP-DGEKPSSNVLAAQIRLLRRKI 210


>gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
 gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
          Length = 230

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 21/198 (10%)

Query: 21  DDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
           D+ +++EGFN   +   EE L +  +     +   ++      LE+ +IIR  + +P+I 
Sbjct: 19  DNYLTMEGFNVTTATNGEEALHNCLQNTFDLVILDIMIPKLNGLEVLKIIREQAALPIII 78

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG 137
           +S   S          G DD + KP    E  ARV A+ RR    +++AE     +  D 
Sbjct: 79  MSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATKYSSQAEQKQEVLEIDN 138

Query: 138 RDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-----YGLFDEAV 185
              ++        G+   L  +E  IL+  + NR +   K QI+  I     YG      
Sbjct: 139 LKIDIVNFSIAKSGQEIKLTSKEFSILKLFVTNRQRVFTKEQIYQMIWKDAYYG------ 192

Query: 186 EENVVESHISKLRKKLRN 203
           +EN++  HI +LR+K+ +
Sbjct: 193 DENIINVHIRRLREKIED 210


>gi|291542818|emb|CBL15928.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 235

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 34/242 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            +++DD   + D       +DG ++  F N L+  E +++  + D++ ++  L    G +
Sbjct: 5   ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGLDALECIETQ-KMDLAILDVMLPDIDGFR 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +    IR     P+I ++        +     G DD + KP +  E++ARV    RR 
Sbjct: 64  ICQK---IREQYFYPIIILTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRY 120

Query: 120 KVSNNRAET----GPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
              NN A T     PI         +  +     + G+   L   E  IL YL  NRGK 
Sbjct: 121 VRYNNAANTEEKDTPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKV 180

Query: 168 VAKTQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYS 219
           ++  ++F  I+G    D     N V +HI +LR+KL      +P    +F+      GY+
Sbjct: 181 ISSEELFENIWGEKFLD---NNNTVMAHIGRLREKLN-----EPAKKPKFIKTVWGVGYT 232

Query: 220 ID 221
           I+
Sbjct: 233 IE 234


>gi|323341542|ref|ZP_08081780.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091026|gb|EFZ33660.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  SQ+P++ +S        +     G DD V KP +  E++ARV ++ RR +
Sbjct: 61  LAVVREVRKDSQIPVLMLSAKTDDLDKIQGLIQGADDYVTKPFNPLEVMARVKSLLRRSQ 120

Query: 121 --VSN---NRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
             V N   ++ E GP+ +  D  + E V G+   L   E  IL YL+A+   RV +  +I
Sbjct: 121 HDVKNDEPDQIEIGPLIIKKDSHEVETVTGKSIQLTALEFGIL-YLLASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
           F  ++   +  V    V  H+S LR K+    G + V    + +GY I+
Sbjct: 180 FERVWQQ-ESVVSAKTVMVHVSHLRDKIEESTGGEKVIQTVWGVGYKIE 227


>gi|255283797|ref|ZP_05348352.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255265680|gb|EET58885.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 220

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 13/165 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IR  S++P+I ++   +    L   + G DD ++KP + + ++AR+  I +R  +V
Sbjct: 62  ICREIRKQSEIPIIVLTSRDTDFDELMSLNIGADDFISKPYNAQVLIARIQKILKRTYEV 121

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N            ++  +   D E+      L + E  IL  L  N+G  + +  I  
Sbjct: 122 QANSVLIHKGVTINLLKATASYGDKEID-----LTKNEMGILRLLTVNKGNIIPRDAIID 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   DE ++EN +  +I +LRKKL      D +++KR LGY +
Sbjct: 177 ELWQ-SDEFIDENTLNVNIVRLRKKLSQIGASDYLETKRGLGYRV 220


>gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99]
          Length = 236

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR         +++ +   T   G +++  D  +  +
Sbjct: 95  GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 154

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 155 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 212


>gi|169334006|ref|ZP_02861199.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258723|gb|EDS72689.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
           17244]
          Length = 226

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 89/185 (48%), Gaps = 9/185 (4%)

Query: 25  SLEGFNSLEFEEWLQS---SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           + EG++++E  + +++      ED   I   ++          R IR     P+I +S  
Sbjct: 22  TFEGYDTVEVNDGMKAIEICKVEDFDIIVMDIMMPELDGFSAVREIRKTKDTPVIMLSAR 81

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD----- 136
                 +  F+ G DD V KP   +E++ RV AI +R +  +++ +   I +        
Sbjct: 82  GEEYDRIHGFEVGADDYVVKPFSPKELMMRVEAILKRTQNKSDKEKENIINIDGINIDLA 141

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R   + G+V  L  +E  +L +L+ N+G  +++ +I S ++G +D   ++  +++HI  
Sbjct: 142 ARILRIDGKVVSLTPKEYDLLTFLIENQGIALSREKIISTVWG-YDYYGDDRTLDTHIKL 200

Query: 197 LRKKL 201
           LRK L
Sbjct: 201 LRKNL 205


>gi|153853764|ref|ZP_01995120.1| hypothetical protein DORLON_01111 [Dorea longicatena DSM 13814]
 gi|149753514|gb|EDM63445.1| hypothetical protein DORLON_01111 [Dorea longicatena DSM 13814]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R +R +    +I ++        +  +++G DD + KP     +L ++ A +RR  
Sbjct: 61  LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++
Sbjct: 121 EKTGAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            L  + V+EN +  +I +LR+K+ +     PV  K   G    WN
Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224


>gi|153816362|ref|ZP_01969030.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756]
 gi|317501003|ref|ZP_07959211.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089043|ref|ZP_08337949.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846323|gb|EDK23241.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756]
 gi|316897581|gb|EFV19644.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406243|gb|EGG85762.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 232

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + +P+I +S        +   + G DD V KP    E++ARV +  RR       A
Sbjct: 67  IREKNSIPIIILSAKSEDADKILGLNVGADDYVTKPFSPLELVARVKSQLRRYTQLGGTA 126

Query: 127 E--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G +R+  D ++  V GE+  L   E  IL  LM N+G+  +  QI+  I+
Sbjct: 127 QNENDKIYSVGGLRINDDLKEVTVDGELVRLTPIEYNILLLLMKNQGRVFSINQIYEMIW 186

Query: 179 GLFDEAV-EENVVESHISKLRKKL 201
              +EA+  +N V  HI  +R+K+
Sbjct: 187 N--EEAIGADNTVAVHIRHIREKI 208


>gi|90580895|ref|ZP_01236697.1| transcriptional regulatory protein CpxR [Vibrio angustum S14]
 gi|90437966|gb|EAS63155.1| transcriptional regulatory protein CpxR [Vibrio angustum S14]
          Length = 230

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 26/232 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD     D  +     D + LEGF+ +E     Q   + D ++I+  L+     V+
Sbjct: 4   ILLVDD-----DIELTALLKDILELEGFDVIEANNGQQGLEKVD-NSIDLILLDVMMPVM 57

Query: 62  ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R +R     P++ ++        +   + G DD + KP   RE+LAR+ A+ RR
Sbjct: 58  NGTEMLRRLREAHSTPVMMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARIRAVLRR 117

Query: 119 LKVSNNRA-ETGPIRVFSD-----GRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKT 171
            + SN +A E   +  + D     GR   V  E+   +   E  +L Y +   G+ ++K 
Sbjct: 118 TQASNEKATEKSDLLTYQDITIYPGRQEVVCQEIPIEMTGTELSLLSYFIQRPGQIISKE 177

Query: 172 QIFSAIYGL----FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            +   + G     FD A     ++ H+S +RKKL  +L   P + + R  GY
Sbjct: 178 SLSLDVLGKRLARFDRA-----IDMHVSNIRKKLPERLDGKPRIKTLRGKGY 224


>gi|294498815|ref|YP_003562515.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|295704137|ref|YP_003597212.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294348752|gb|ADE69081.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294801796|gb|ADF38862.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 90/184 (48%), Gaps = 4/184 (2%)

Query: 40  SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           S A  DV  ++ +++  G+ +    R+ +      ++ ++   ++Q  +   D+G DD V
Sbjct: 42  SEAHYDVLILD-WMMPNGDGIDVCKRLRKEGYAGAILMLTAKDAVQDRIQGLDAGADDYV 100

Query: 100 NKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157
            KP    E+LAR+ A+ RR    +     E   + +    +  +   E   L  RE ++L
Sbjct: 101 IKPFEIDELLARLRALSRRNYAPILEEEVEIASMILKRASQTVQFDEEFIQLSPREFQLL 160

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           ++L+ N+G+ +++  I   ++G ++  V    +++ +  LRKKL      D + S R +G
Sbjct: 161 DFLVKNKGQVLSRDIILDRVWG-YESDVSIKTIDATVKLLRKKLEKFNKQDLIQSIRGVG 219

Query: 218 YSID 221
           Y I+
Sbjct: 220 YKIE 223


>gi|291544436|emb|CBL17545.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 33/220 (15%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++     L   +    EG+   E E+ +Q+         +  ++      +
Sbjct: 4   LLIVDDEANIR-----LVVKEYAEFEGYEVAEAEDGMQAVELVKSQDFDVIIMD-----I 53

Query: 62  ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
            +PR+        I+ +  +P+I +S        L  F+ G+DD V KP   +E++ARV 
Sbjct: 54  MMPRLDGFSACKEIKKYKNIPVIMLSARGEEYDKLFGFELGIDDYVVKPFSPKELMARVK 113

Query: 114 AIYRRLKVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           A+ +R   S + A   P R+  +       GR+  V G+   +  +E  +L YL+ N   
Sbjct: 114 AVIKR---SEHAAPANPDRLKFEGLEIDMAGREVYVNGKRVSMTPKEYDLLFYLVKNSNI 170

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            + + ++   ++G +D   ++  V++HI    K LRN LG
Sbjct: 171 ALTRDKLLEEVWG-YDFFGDDRTVDTHI----KMLRNSLG 205


>gi|290352169|dbj|BAI78795.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VCK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|227513408|ref|ZP_03943457.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524551|ref|ZP_03954600.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227083281|gb|EEI18593.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227088226|gb|EEI23538.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 231

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR +  +P++ ++    +   +   D+G DD + KP    E+LAR+  + R   
Sbjct: 64  LEVLRRIRQNDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLRH-- 121

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            S N+A +  +    D       R       +  L +RE  +L  L+ N G+ + + ++ 
Sbjct: 122 -SQNQATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYELLLTLIKNAGETMTRDELL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + ++G+  E  + NVV+ +I  LR K+        + + R +GY +  N
Sbjct: 181 NLVWGVDFEG-QPNVVDVYIRYLRNKVDRNFKKTLIHTVRGVGYVLSAN 228


>gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 249

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 76/153 (49%), Gaps = 12/153 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +R  + VP+I ++    +   +   + G DD + KP   +E+ +R+ AI RR  
Sbjct: 64  LQVCQTLRESTGVPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRRTV 123

Query: 121 VSNNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
               +A           E GP+R+ +  R   + G+   L   E  +L+ L++  G+ V+
Sbjct: 124 PGKGKAGAGHAAEQVIMEIGPLRIETHKRQVYLHGQRIQLTGIEFDVLKLLVSKAGQTVS 183

Query: 170 KTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201
           ++ I   ++G   +   +  VV+ ++S+LR K+
Sbjct: 184 RSDILQQVWGYSANHYADLRVVDVNVSRLRSKI 216


>gi|157961570|ref|YP_001501604.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157846570|gb|ABV87069.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR       +  +G 
Sbjct: 72  KAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPQITSGA 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    +   +  +   +   E  ILEYLM +  + VAK ++   IYG  D+  + N +
Sbjct: 132 LELDLAAKQVSLNEQPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDPNTI 189

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 190 EVMVSRLRKKLTKGGIENPIVTIRGQGYKFN 220


>gi|170736312|ref|YP_001777572.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818500|gb|ACA93082.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 221

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 20/215 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L + G+      DG +  G   +E         R D+  ++A L G  G  VL   R +R
Sbjct: 20  LARLGHAVDLETDGATANGLLRVE---------RFDLVVLDANLPGMDGFTVL---RNLR 67

Query: 69  AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           A  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR     N   
Sbjct: 68  ASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHANDVL 127

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAV 185
           T G + +    R  E+ G+   L R+E  +LE ++A+R +R+ +K ++ + ++   +E  
Sbjct: 128 TLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKEELLNQLFSFGNEPT 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             N VE +++++RKKL+       + + R +GY I
Sbjct: 187 -ANAVEQYVTRVRKKLQGS--SVEIRTARGMGYQI 218


>gi|221066634|ref|ZP_03542739.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220711657|gb|EED67025.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 19/225 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EK 59
           +L++D ALV  G  A     G+ L+GF         Q+ A    S  +  ++  G   E 
Sbjct: 4   LLVEDNALVASGVKA-----GLQLQGFGVDVVGCASQADAALKSSHFDVCVLDLGLPDED 58

Query: 60  VLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            L L  + R  SQ   +P++ ++   ++   ++   +G DD + KP    E+ AR+ A+ 
Sbjct: 59  GLHL--LARWRSQGLALPVLVLTARDAVGQRIEGLQTGADDYLVKPFDLHELAARLHALL 116

Query: 117 RRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR      +    G + V          G    L RRE  +L  L+ + G+ ++  Q+  
Sbjct: 117 RRAAGRTVDWIVLGDVNVDLAAGQAMRGGCAVDLSRREWALLRALLQSPGRVLSLEQLRD 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++YG +   VE N V  H+  LR+    KLG D V++ R +G+ +
Sbjct: 177 SLYG-YSLDVESNAVNVHVHHLRR----KLGSDMVETVRGVGFRL 216


>gi|114765354|ref|ZP_01444471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pelagibaca bermudensis HTCC2601]
 gi|114542334|gb|EAU45363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. HTCC2601]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R I+   +   VP+I +S        +   ++G DD V KP   RE++ARV A  R
Sbjct: 65  IEVCRQIKTRPETRGVPVIMLSARSEEIDRVRGLETGADDYVVKPYSLRELMARVKAQLR 124

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +   +  R E   I + ++       G+   L   E R+L   M   G+  ++ Q+  
Sbjct: 125 RARPAAAGLRLEYDDIILDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 185 RVWG-RDIYVDTRTVDVHIGRLRKALGIYGGGDPLRTVRGAGYAL 228


>gi|78063373|ref|YP_373281.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77971258|gb|ABB12637.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 221

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 20/215 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L + G+      DG +  G   +E         R D+  ++A L G  G  VL   R +R
Sbjct: 20  LARLGHAVDLETDGATANGLLRVE---------RFDLVVLDANLPGMDGFTVL---RHLR 67

Query: 69  AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           A  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR     N   
Sbjct: 68  ASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHANDVL 127

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAV 185
           T G + +    R  E+ G+   L R+E  +LE ++A+R +R+ +K ++ + ++   +E  
Sbjct: 128 TLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKDELLNQLFSFGNEPT 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             N VE +++++RKKL+       + + R +GY I
Sbjct: 187 -ANAVEQYVTRVRKKLQGS--SVEIRTARGMGYQI 218


>gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 234

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           Q+P+I ++   S    +   + G DD + KP   +E+L+R+  I RR   + N AE  P 
Sbjct: 74  QIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRAINLAEIDPT 133

Query: 132 ----RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                +  D +   V+   E   L   E ++L YL  N  + +++ QI   ++G ++   
Sbjct: 134 LQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILEKVWG-YEYGG 192

Query: 186 EENVVESHISKLRKKLRN 203
           +  +V+ HIS LR KL N
Sbjct: 193 QTRIVDIHISHLRDKLEN 210


>gi|329888261|ref|ZP_08266859.1| response regulator [Brevundimonas diminuta ATCC 11568]
 gi|328846817|gb|EGF96379.1| response regulator [Brevundimonas diminuta ATCC 11568]
          Length = 223

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE  + +RA   + P++ ++   S+   +   ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 58  LEAVQAMRAGGLKTPVLMLTALGSVDDRVAGLNAGADDYLVKPFAFSELSARLQALVRRP 117

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L  +  R     + V          G    L   E ++LE L  N G  V +T +  ++
Sbjct: 118 PLAEATTRHRVADLEVDVAAHRATRAGRTLDLTPHEFKLLERLARNAGHAVTRTMLLESL 177

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  FD     N++++HIS+LR K+      + + + R +GY +
Sbjct: 178 WGFHFDP--RANLIDAHISRLRAKVDRGFDQELIHTIRGVGYVL 219


>gi|313683198|ref|YP_004060936.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156058|gb|ADR34736.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
          Length = 218

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + RA+   P I +S +  ++T    FD G +D + KP +  E+L R+ A+ RR K  
Sbjct: 65  LQELRRANDHTPTIYLSSHQEIETITKAFDFGAEDYLKKPFNTDELLVRIHALLRRTK-G 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R   G + +    +   ++G    L  +E +++   + N G+ V K  I   ++    
Sbjct: 124 KTRHCAGELCLDEAHKCVLMEGRELSLSLKEYQLMALFIRNAGEIVTKEAIMDTLWN-PS 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E + +  +  +I++L++    ++G + + + R +GY +
Sbjct: 183 EMISDGAIRVYITRLKQ----EIGSERILNIRGVGYRL 216


>gi|312130354|ref|YP_003997694.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311906900|gb|ADQ17341.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 227

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 81/163 (49%), Gaps = 7/163 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + +R + +  P++ ++   + +  +   DSG DD ++KP    E+ AR+ A+ RR 
Sbjct: 63  LTLCKTLRDNGNHTPILLLTALGTTEDIITGLDSGADDYLSKPFEFSELRARIRALTRRG 122

Query: 120 KV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +N      + +  D +  +   +   L  +E  +LE+ M+N G+ ++K ++   
Sbjct: 123 NAVIQKSNILRVADLELNVDTKAVKRGDKEITLTAKEFSLLEFFMSNVGRVISKVELAEK 182

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I+ + FD     NV+E +++ LRKK+        + ++  +GY
Sbjct: 183 IWDITFDTGT--NVIEVYVNFLRKKIDKDFDVKLIHTQIGMGY 223


>gi|291523701|emb|CBK89288.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
          Length = 231

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 16/171 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R +R    VP++ +S        L+  + G DD + KP  + E++++V A+ RR +
Sbjct: 60  IETCRRMRERHSVPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALIRRYR 119

Query: 121 V----SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V    S NR       ET  +++F++    E       L  +E  IL+ LM N  +    
Sbjct: 120 VYDSGSANRTNKDESIETDGLKLFTNRNKVEFNDNEIKLTGKEYEILKLLMKNPDRIYTI 179

Query: 171 TQIFSAIYGLFDEAVE---ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I+  ++   DEA     +N V  HI  LR KL    G   + ++   GY
Sbjct: 180 EMIYEMVW---DEAFTYNAKNTVMVHIKNLRNKLIKACGDACIHTEWGRGY 227


>gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 237

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCRKLRDKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN   +      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218


>gi|297559280|ref|YP_003678254.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843728|gb|ADH65748.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 231

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 17/150 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ + +R  SQVP+I +S   S    +   DSG DD V KP    E+LAR+ A  RR  
Sbjct: 60  MEVIQRLRGWSQVPIIVLSARHSAGEKVRCLDSGADDYVTKPFGMDELLARMRAAERRSV 119

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  ++  +   + G  RV         +GE   L   E  ILE L  + G+ V++ 
Sbjct: 120 RVDEAPVVRTPSFTVDLGAKRVLR-------EGEEVRLTPTEWHILEILARHAGQLVSQR 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q+   ++G   ++ E N +  ++++LR+KL
Sbjct: 173 QLLHDVWGPAYQS-ETNYLRVYMAQLRRKL 201


>gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes
           Clip81459]
 gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-064]
 gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-175]
 gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816]
 gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220]
          Length = 236

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR         +++ +   T   G +++  D  +  +
Sbjct: 95  GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 154

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 155 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 212


>gi|198283804|ref|YP_002220125.1| winged helix family two component transcriptional regulator
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665314|ref|YP_002426436.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248325|gb|ACH83918.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517527|gb|ACK78113.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 220

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 30/158 (18%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L R+    + +P+I IS   +L   ++  D G DD + KP    E+LAR+ AI RR    
Sbjct: 63  LQRVRAGGNSLPIIIISARDALADRVEGLDLGADDYLVKPFAMGELLARLRAIIRRQGGQ 122

Query: 119 -----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                      L +S + A+ G + V               L  +E  +L+ L+   G  
Sbjct: 123 GSPVLGNGSLQLDLSTHTAQIGELSVL--------------LTNKEFALLQALLLRPGSI 168

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           +++ Q+   +YG +DE VE N ++  I  LRKKL  K+
Sbjct: 169 LSRAQLEERLYG-WDEGVESNSIDFLIHGLRKKLGAKV 205


>gi|196229835|ref|ZP_03128699.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196226161|gb|EDY20667.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 221

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 2/148 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIR 132
           P++ +S   +LQ  +   + G DD + KP    E++AR+ ++ RR         E   I+
Sbjct: 74  PVLILSARDALQDKVKGLNLGADDYLAKPFSLEELIARIRSLLRRQGGKKTTVFEHRAIK 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    R  EV+G+   L  RE  +LE  M N+G+ + +T I   ++    + ++ N+++ 
Sbjct: 134 LDLLARTVEVEGKRIDLTAREFSLLELFMQNQGRVLTRTMIAEKVWDSHSD-LDTNLLDV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +LRKKL +        + R +GY +
Sbjct: 193 YMRRLRKKLESTPDKQYFKTLRGVGYEM 220


>gi|85373254|ref|YP_457316.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
 gi|84786337|gb|ABC62519.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
          Length = 251

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 18/175 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +EL R +R HS++P+I ++     +      + G DD ++KP   R +LAR+ AI RR  
Sbjct: 75  MELLRRLREHSELPVIFLTSKDDERDEEAGLEMGADDYISKPFSLRLLLARIRAILRRSG 134

Query: 120 -----KVSNNRAETGPIRVFSDGR---DPEVQ-----GEVFPLPRRERRILEYLMANRGK 166
                 V     E+     ++ GR   DP        G+   L   E  ILE L A  G 
Sbjct: 135 LEEGESVGTAPGESEVGETYARGRLTVDPARHQVTWDGKPVSLTVTEFLILEALAARPGV 194

Query: 167 RVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             ++ Q+  A Y   DE  V++  V+SHI ++R+K R+    F  +++    GYS
Sbjct: 195 IKSRNQLMDAAYP--DEVYVDDRTVDSHIKRMRRKFRSVDREFGAIETLYGAGYS 247


>gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 254

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           IRA S+VP+I ++    +   +   + G DD + KP   +E+ AR+  + RR        
Sbjct: 74  IRAQSEVPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRRASQGQGGS 133

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S+N    G + V  + R     GE   L   E  +LE L++  G+ + +  +  A
Sbjct: 134 SVGSASSNVIAVGDLSVDFNRRQAFRCGERIRLTGMEFHLLELLISRNGEPINRLDMLEA 193

Query: 177 IYGLFDE-AVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           ++G   E A +  VV+ HIS+LR KL  + L  + + + R +GY
Sbjct: 194 VWGYKPERASDSRVVDVHISRLRGKLEPDPLNPELILTARGMGY 237


>gi|314932970|ref|ZP_07840336.1| DNA-binding response regulator [Staphylococcus caprae C87]
 gi|313654289|gb|EFS18045.1| DNA-binding response regulator [Staphylococcus caprae C87]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 7/159 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+    V
Sbjct: 64  RKMRQESNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFGV 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  +    V    +D   +G+    L + E  ILE L+  + + V +  + +A++  
Sbjct: 124 EEKRTLSWQDTVVDLSKDSIQKGDKTIFLSKTEMIILEMLINKKNQIVTRDTLITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DEA V +N +  ++++LRKKL      D +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLAEINMDDAIETKVGKGY 220


>gi|310817191|ref|YP_003965155.1| DNA-binding response regulator PetR [Ketogulonicigenium vulgare
           Y25]
 gi|308755926|gb|ADO43855.1| DNA-binding response regulator PetR [Ketogulonicigenium vulgare
           Y25]
          Length = 235

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 7/151 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE  ++  R IRA   VP++ ++        +   ++G DD + KP   +E+L R+ A+ 
Sbjct: 59  GENGIDFCRDIRARLGVPVLLLTARGETSDRISGLEAGADDYLPKPFEPKELLLRINAVL 118

Query: 117 RRLKVSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR  V+  R  T      G  R  +D  +  + G +  L   E +++  L A  G  V++
Sbjct: 119 RRTPVAEARVPTHKVLHMGAARYDADRGELWLHGTLQRLTATEAQLMRVLAARAGSVVSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           T++   +     E ++E  V+  I++LR+KL
Sbjct: 179 TELVEEM-SRGPEPLQERAVDVQITRLRRKL 208


>gi|260469831|ref|ZP_05813985.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259028402|gb|EEW29724.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 227

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L L + IRA   + P I ++    +   ++  ++G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LSLVKAIRAAGVRTPAIFLTSVGGIDDRVEGLEAGGDDYLVKPFAFSELLARINALGRRP 119

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   L+V++   +    RV   GR  ++Q        RE  +LE LM   G+ + +
Sbjct: 120 AAQEQKTVLRVADLEMDLIMRRVVRQGRPIDLQP-------REFSLLEVLMRGEGRVITR 172

Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           T +   ++   FD     +VVE+HIS+LR K+        + + R  GYS+
Sbjct: 173 TMLLERVWDFHFDP--RTSVVETHISRLRAKIDKPFETQLIHTVRNTGYSL 221


>gi|227329104|ref|ZP_03833128.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 242

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 11/178 (6%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89
           N  +  EW++  +    S I   L+  G   L L R IR  S VP+I ++        L 
Sbjct: 42  NGNDVVEWVRQHSP---SLILLDLMLPGCDGLTLCRTIRQFSNVPIIMVTARSEEIDRLL 98

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN------RAETGPIRVFSDGRDPEVQ 143
             + G DD + KP   RE++ RV  + RR    N+      + ET  + +   G      
Sbjct: 99  GLEIGADDYICKPFSPREVVVRVRTLLRRCGWQNDGLKAAEKTETA-LLIDKSGFQASYL 157

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           G+   L   E R+L+ L    GK  ++  +   +Y  +   V +  ++SHI  LR+KL
Sbjct: 158 GQNLDLTPAEFRLLKTLSTEPGKVFSREALLDKLYDDY-RVVTDRTIDSHIKNLRRKL 214


>gi|239623920|ref|ZP_04666951.1| two-component system protein response regulator [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239521951|gb|EEQ61817.1| two-component system protein response regulator [Clostridiales
           bacterium 1_7_47FAA]
          Length = 234

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 8/150 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S   ++ +S        +     G DD V KP   RE++ R+ A  RR +
Sbjct: 63  LEVCRQIRQFSYCSILFLSSKNDDVDKILGLSWGGDDYVTKPFSPREVVFRIKAQLRRQQ 122

Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          GP+R+  +       G+   L  RE  +L YLM N  K ++K ++
Sbjct: 123 YQTASPLQEGTSLTVGPLRIDKESCRAYKGGQEIGLTGREYLLLTYLMENADKIISKERL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  ++G +  ++ +N +  HI  LR+K+ +
Sbjct: 183 YEQVWGEY-SSICDNTIMVHIRHLREKIED 211


>gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
 gi|167654411|gb|EDR98540.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL + IR   +  P++ ++    ++  +   D G DD + KP    E++ARV  + RR 
Sbjct: 60  LELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRK 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + +NR   G + +  + ++     +   L  +E  +LEY++ N+   +++ QI    +
Sbjct: 120 PALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D     NVV+ +I  LRKK+    G   + + R +GY +
Sbjct: 180 N-YDFEGGSNVVDVYIRYLRKKIDEGFGCKLIHTVRGVGYVL 220


>gi|149192632|ref|ZP_01870779.1| transcriptional regulator CpxR [Vibrio shilonii AK1]
 gi|148833534|gb|EDL50624.1| transcriptional regulator CpxR [Vibrio shilonii AK1]
          Length = 143

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 15/135 (11%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-----IRVFSDGRDPEVQGEVFP 148
           G DD + KP   RE+LAR+ AI RR +     A         I+VF   ++   QG++  
Sbjct: 9   GADDYLPKPFSDRELLARIKAILRRTQSKPESATADCLSFDDIQVFPGKQEAHCQGQLLD 68

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKLRNK 204
           L   E  +L Y +   G+ + K  +   + G     FD A     V+ H+S LRKKL  K
Sbjct: 69  LTTTEFALLHYFVQKPGETLTKESLSLDVLGKRLSAFDRA-----VDMHVSNLRKKLPEK 123

Query: 205 LGFDP-VDSKRFLGY 218
               P + + R  GY
Sbjct: 124 ADGKPRIKTLRGRGY 138


>gi|127514186|ref|YP_001095383.1| two component heavy metal response transcriptional regulator
           [Shewanella loihica PV-4]
 gi|126639481|gb|ABO25124.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella loihica PV-4]
          Length = 238

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 88/168 (52%), Gaps = 7/168 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++LE  R+   +S +P++ ++   SL+  ++  +SG DD + KP    E+LARV  + 
Sbjct: 72  GWQILEKIRL--NNSDIPVMFLTAKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLL 129

Query: 117 RR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR   ++ ++      +++    R    +     L  +E  +LE L+ ++G+ + ++ I 
Sbjct: 130 RRGTKQLQSDTLTLHGLKLDITKRRASREQTKLHLTNKEFSLLELLVRHQGEVLTRSFIA 189

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++ + FD   + NV++  I +LR K+ +      + + R +GY +D
Sbjct: 190 SQVWDMNFDS--DTNVIDVAIRRLRAKVDDPFSVKLIHTVRGMGYKLD 235


>gi|332828998|gb|EGK01669.1| hypothetical protein HMPREF9455_02050 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 233

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           + +P+I ++   +    L  F  G DD ++KP   +E++ARV ++ +R +   + A    
Sbjct: 77  NNIPIIFLTAKDTENDMLTGFSIGGDDYISKPFSIKEVVARVRSVLKRTENQTSAAHKNV 136

Query: 131 IRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           + V +     D +   V  EV  L + E  IL  L+ N G+  ++T I    +   D  V
Sbjct: 137 LTVNNLEIDFDTKTVSVDKEVIELTKTEFNILVLLVQNTGRIFSRTDILDKAWK-DDGIV 195

Query: 186 EENVVESHISKLRKKL 201
            E  V+ HI++LRKK+
Sbjct: 196 LERTVDVHIARLRKKI 211


>gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL F2-208]
 gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A]
          Length = 246

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR         +++ +   T   G +++  D  +  +
Sbjct: 105 GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 164

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 165 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 222


>gi|283768370|ref|ZP_06341282.1| response regulator receiver domain protein [Bulleidia extructa
           W1219]
 gi|283104762|gb|EFC06134.1| response regulator receiver domain protein [Bulleidia extructa
           W1219]
          Length = 218

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P++ ++ +   +  +D F S  D  + KP     + ARV ++ ++  
Sbjct: 60  LEVLKKIREKSALPILMLTAFSDEEYKIDAFTSLADGYIEKPFSLPVLKARVDSLIKKHF 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   + V       +++ +   +  +E  IL+YL+ N G  + +TQI   ++  
Sbjct: 120 GQIEKFEYKNVEVNFTSYTAKLKNKDVDINAKELEILKYLLDNEGHALTRTQIIDNVWKD 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 180 TEEIPYDRVIDVYIKELRKKLE----LDCIVTIRNVGYKLE 216


>gi|226361427|ref|YP_002779205.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226239912|dbj|BAH50260.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 219

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 5/145 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +RA S VP++ ++     ++ +     G DD + KP    E+LAR+  + +R +
Sbjct: 58  LQVLRQLRAVSDVPVVILTARDDERSVVRGLRGGADDYLVKPARLAELLARLDVVTQRRR 117

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   AE     G + V    R+ EV G    L  +E  +LE L+   G  V++ Q+  A
Sbjct: 118 ATGPSAEQTVTEGDVVVDLAAREVEVGGAPVTLTAKEFELLEVLVTRPGAAVSRQQLMDA 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G    A+    ++ H++ LR KL
Sbjct: 178 VWGDAYVAISRT-LDVHMTGLRAKL 201


>gi|167769573|ref|ZP_02441626.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM
           17241]
 gi|167668541|gb|EDS12671.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 98/200 (49%), Gaps = 5/200 (2%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDY 81
           G +++G ++ +   +       D++ ++  + G+    L + R +RA  + +P++ ++  
Sbjct: 24  GYAVDGCDNGDDAAYYLEQTPYDLAILDIMMPGRDG--LSILRGLRAAGRTLPVLLLTAL 81

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-IRVFSDGRDP 140
            ++   +   D+G DD + KP    E+LAR+  + RR         T   + +    R  
Sbjct: 82  DAVGDRVSGLDAGADDYLTKPFAFDELLARIRVLLRRSSSDKAVVLTAEDLTMELSTRTV 141

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
              G+   L  +E  ILEYL+ N+G  +++ Q+ S ++  +D     N+V+ ++  LR+K
Sbjct: 142 RRAGQEITLSSKEYAILEYLLRNKGVVLSRAQLESHVWD-YDFEGGSNIVDVYVRYLRRK 200

Query: 201 LRNKLGFDPVDSKRFLGYSI 220
           + +      + + R +GY+I
Sbjct: 201 IDDPFEKKLIQTVRGVGYTI 220


>gi|158422761|ref|YP_001524053.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158329650|dbj|BAF87135.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 238

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 5/131 (3%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           +G DD + KP    E+LARV A+ RR   + +      G + +          G+  PL 
Sbjct: 105 AGGDDYLPKPYAFTELLARVEALSRRGAPQAAETVYRVGDLELDRLAHRVARGGKEIPLQ 164

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209
            RE R+LEYLM + G+ V +T +   ++   FD   + NV++ H+S+LR K+        
Sbjct: 165 PREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP--QTNVIDVHVSRLRSKIDKGFDVPL 222

Query: 210 VDSKRFLGYSI 220
           + + R  GY +
Sbjct: 223 IHTVRGAGYMV 233


>gi|126650368|ref|ZP_01722596.1| hypothetical protein BB14905_18480 [Bacillus sp. B14905]
 gi|126593018|gb|EAZ87000.1| hypothetical protein BB14905_18480 [Bacillus sp. B14905]
          Length = 231

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 78/149 (52%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +     +P++ I+    +   +   + G DD + KP   RE++AR+  I+RRL 
Sbjct: 63  LDICKQVTTTYNIPILMITAKSDITDKVIGLEYGADDYITKPFDLREVVARIRTIFRRLD 122

Query: 121 VSNN---RAETGPIRVFSDGRDPE----VQGEV-FPLPRRERRILEYLMANRGKRVAKTQ 172
            +N+   + ++  IR  +    PE    ++ ++   L  +E  +L  L+  +GK   +++
Sbjct: 123 QTNSLEKQEKSQDIRFKNILILPEERLVIKDDINIELTPKEYDLLMTLIGQKGKIFTRSE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   ++G +D   +   V++HI +LRKKL
Sbjct: 183 LLDLVWG-YDFVGDTRTVDTHIQRLRKKL 210


>gi|110803691|ref|YP_699201.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110684192|gb|ABG87562.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 223

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 8/187 (4%)

Query: 27  EGFNSLEF---EEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           EGFN LE    EE L+  +   V  AI   ++ K +  L + R IR  S  P+I ++   
Sbjct: 25  EGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG-LAVCRNIREVSNTPIILLTAKS 83

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AETGPIRVFSDGRDP 140
             +  L  ++ G DD + KP   + +LA+  A+ RR    N++   +   + +     + 
Sbjct: 84  QEEDKLLGYELGADDYMTKPFSPKVLLAKSKALLRRTGTLNDKNILDFNGLTINKLSHEV 143

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           ++ GE   L  +E  +L YL +N G  +++ +I   ++G +D   +   V+++I +LR+K
Sbjct: 144 KLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG-YDYFGDIRTVDTNIKRLREK 202

Query: 201 LRNKLGF 207
           L +K  +
Sbjct: 203 LLDKANY 209


>gi|326341835|gb|EGD65618.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           O157:H7 str. 1125]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E  QS      S +   L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ 
Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWIGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IY  +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219


>gi|229193368|ref|ZP_04320318.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228590169|gb|EEK48038.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
          Length = 220

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 57  EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 116

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  GE   L +RE  +L +L+ N+   +++  + + 
Sbjct: 117 -NQQKEINFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 176 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 218


>gi|226939159|ref|YP_002794230.1| BaeR [Laribacter hongkongensis HLHK9]
 gi|226714083|gb|ACO73221.1| BaeR [Laribacter hongkongensis HLHK9]
          Length = 236

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 10/170 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R +R+ S +P+I ++        L   + G DD + KP   RE++ARV  + RR +
Sbjct: 67  LSLCRALRSFSSLPVIMLTARVEESDRLLGLEIGADDYICKPFSPREVVARVRTVLRRSQ 126

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +           ++  P  +  D       G    L R E R+LE L+ +  +  ++ Q
Sbjct: 127 PAAAAPAAAMPADSQATPFVLDPDTLTASYHGHELELTRVEFRLLEVLVDSPRRVFSRDQ 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +   +Y      V +  V+SHI  LRKKL   +   DP+ S   +GY  +
Sbjct: 187 LLGHVYD-DHRVVSDRTVDSHIKNLRKKLAQVQPDADPIRSVYGVGYKFE 235


>gi|213428273|ref|ZP_03361023.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 173

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K
Sbjct: 3   LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 62

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +    AE+ P+ +          G+   L   E R+L+ L    GK  ++ Q+ + 
Sbjct: 63  PQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNH 121

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           +Y  +   V +  ++SHI  LR+KL +
Sbjct: 122 LYDDY-RVVTDRTIDSHIKNLRRKLES 147


>gi|168466206|ref|ZP_02700076.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195631460|gb|EDX50020.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 240

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K    +    AE+ P+ +          G+   L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR         +++ +   T   G +++  D  +  +
Sbjct: 92  GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 151

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 152 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 209


>gi|77361118|ref|YP_340693.1| transcriptional regulatory protein in two-component regulatory
           system with baeS [Pseudoalteromonas haloplanktis TAC125]
 gi|76876029|emb|CAI87251.1| Transcriptional regulatory protein in two-component regulatory
           system with baeS [Pseudoalteromonas haloplanktis TAC125]
          Length = 226

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+  +EL + IR  S VP+I +S        L   + G DD + KP  + E++ARV AI 
Sbjct: 58  GQSGIELCKAIRQFSNVPIIMVSAKVEEIDRLLGLELGADDYICKPFSYAELVARVKAIL 117

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RRL  +N   +T  +++       + +     L   E ++ + L  N  +  ++  +   
Sbjct: 118 RRL--NNVEPKTNVMQLDESTYSVKYKAVSIELTNVEFQLFKPLFNNPNRIYSRDSLMDT 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           +Y      V +  ++SHI KLRKKL
Sbjct: 176 MYA-DQRIVSQRTIDSHIKKLRKKL 199


>gi|152976855|ref|YP_001376372.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025607|gb|ABS23377.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 235

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR+ S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRSVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N+      + +F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAENDCLGVNGLLLFPSQHIIEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|15675804|ref|NP_269978.1| putative two-component response regulator [Streptococcus pyogenes
           M1 GAS]
 gi|19746916|ref|NP_608052.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21911269|ref|NP_665537.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
 gi|28896642|ref|NP_802992.1| two-component response regulator [Streptococcus pyogenes SSI-1]
 gi|50915071|ref|YP_061043.1| two-component response regulator [Streptococcus pyogenes MGAS10394]
 gi|56808485|ref|ZP_00366226.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71904371|ref|YP_281174.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71911538|ref|YP_283088.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94989360|ref|YP_597461.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94991300|ref|YP_599400.1| two-component response regulator [Streptococcus pyogenes MGAS10270]
 gi|94993250|ref|YP_601349.1| two-component response regulator [Streptococcus pyogenes MGAS2096]
 gi|94995212|ref|YP_603310.1| two-component response regulator [Streptococcus pyogenes MGAS10750]
 gi|139474488|ref|YP_001129204.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209560154|ref|YP_002286626.1| Two-component system response regulator [Streptococcus pyogenes
           NZ131]
 gi|13623031|gb|AAK34699.1| putative two-component response regulator [Streptococcus pyogenes
           M1 GAS]
 gi|19749163|gb|AAL98551.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS8232]
 gi|21905483|gb|AAM80340.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
 gi|28811896|dbj|BAC64825.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 gi|50904145|gb|AAT87860.1| Two-component response regulator [Streptococcus pyogenes MGAS10394]
 gi|71803466|gb|AAX72819.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71854320|gb|AAZ52343.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94542868|gb|ABF32917.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94544808|gb|ABF34856.1| Two-component response regulator [Streptococcus pyogenes MGAS10270]
 gi|94546758|gb|ABF36805.1| Two-component response regulator [Streptococcus pyogenes MGAS2096]
 gi|94548720|gb|ABF38766.1| Two-component response regulator [Streptococcus pyogenes MGAS10750]
 gi|134272735|emb|CAM31008.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209541355|gb|ACI61931.1| Two-component system response regulator [Streptococcus pyogenes
           NZ131]
          Length = 217

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I ++      T L  F+  + D V KP     ++ R+  +  R+ 
Sbjct: 61  LEVLKTIRKTSDVPIIMLTALDDEYTQLVSFNHLISDYVTKPFSPLILIKRIENVL-RVS 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + + + G + V         QG +  L ++E  I++YL     K V + Q+   I+G 
Sbjct: 120 TPDEKRQIGDLLVDETEHSVYWQGTLVKLTKKEYDIIDYLAKRHQKIVTRDQLMDDIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKL 201
               ++  V+++HI  LRKK+
Sbjct: 180 --SELDTRVLDNHIKNLRKKM 198


>gi|326797945|ref|YP_004315764.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326548709|gb|ADZ77094.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 6/134 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D G DD ++KP +  E+ +R+ AI RR  K+ +     G  RV    R          L
Sbjct: 91  LDLGADDYLSKPFYLLELQSRMQAIARRKFKLQDELIPVGDFRVDLPKRLILFNDNPIDL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE---NVVESHISKLRKKLRNKLG 206
            R+E  +L YL+ ++ + + + Q+   I+G +  AV++   N +++HI  +RKKL     
Sbjct: 151 SRKEFDLLSYLLLHKNRVLTRMQLSEHIWGSY--AVDDNDSNYIDAHIKNIRKKLGQCAS 208

Query: 207 FDPVDSKRFLGYSI 220
            + +++ R +GY I
Sbjct: 209 IEWLETVRGVGYRI 222


>gi|262039182|ref|ZP_06012502.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
 gi|261746798|gb|EEY34317.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
          Length = 196

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D G DD + KP    E+ AR+ A+ RR    S+N+ E   + + +  +     G+   L
Sbjct: 62  LDMGADDYLIKPFDFNELSARIRAVVRRKFGNSSNKIEVKDLVLDTTEKSVTRAGKKIDL 121

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  ILEYL+ ++ + +++ QI   ++G ++   + N+++  I  +RKK+  + G   
Sbjct: 122 TGKEYEILEYLVQSKNRILSRDQIIERVWG-YEYEGDSNIIDVLIKNIRKKIDIEDGKQI 180

Query: 210 VDSKRFLGYSI 220
           + +KR +GY +
Sbjct: 181 IFTKRGMGYVV 191


>gi|226228285|ref|YP_002762391.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091476|dbj|BAH39921.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 231

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 78/149 (52%), Gaps = 7/149 (4%)

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   + + R +RA    VP++ ++   ++   +   D+G DD + KP H  E+ ARV A+
Sbjct: 56  GMDGIAICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRAL 115

Query: 116 YRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR+ V   +    G + + +  +     G + PL  RE  +L YL  + G+ V++ ++ 
Sbjct: 116 LRRMSVVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELA 175

Query: 175 SAIYGLFDEAVE--ENVVESHISKLRKKL 201
             ++   DE  +   N+++ ++S+LR+K+
Sbjct: 176 EHVW---DENHDPNANLIDVYVSRLRRKV 201


>gi|218458443|ref|ZP_03498534.1| two-component response regulator protein [Rhizobium etli Kim 5]
          Length = 183

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 5/131 (3%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLP 150
           +G DD + KP    E+LARV  + RR            G + +     +    G+  PL 
Sbjct: 51  AGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDVIYRVGDLELDRLSHEVRRGGKEIPLQ 110

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209
            RE R+LEYLM N G+ V +T +   ++   FD   + NV++ H+S+LR K+        
Sbjct: 111 PREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP--QTNVIDVHVSRLRSKIEKDFSQPL 168

Query: 210 VDSKRFLGYSI 220
           + + R  GY I
Sbjct: 169 LKTIRGAGYMI 179


>gi|209695438|ref|YP_002263367.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238]
 gi|208009390|emb|CAQ79664.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238]
          Length = 219

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 22/159 (13%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSN 123
            +P+I +S   +L   +D  ++G DD + KP    E++AR+    RR        LK+ N
Sbjct: 72  NIPVIILSARDTLTQRIDGLNAGADDYLTKPFELPELIARLRVQLRRASGSASSVLKIGN 131

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
              +T   ++          GE   L   E +++ Y M N+ K +++T++   IY   FD
Sbjct: 132 LSLDTCSSKIVW-------YGETIELTALEYKVVAYFMHNKEKVISRTELVEHIYKQDFD 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + N +E  I ++R+KL   +    + + R LGY ++
Sbjct: 185 R--DSNTIEVFIGRIRRKLSPSV----IKTVRGLGYQLN 217


>gi|187928801|ref|YP_001899288.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|241114328|ref|YP_002973803.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
 gi|187725691|gb|ACD26856.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
 gi|240868901|gb|ACS66559.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
          Length = 228

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 5/156 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126
           A   VP++ ++   S+   +   + G DD + KP    E+LARV  + RR    VS++R 
Sbjct: 69  AEQAVPVLFLTARDSVADRVKGLEMGADDYLVKPFAFAELLARVRTLLRRGTGAVSSDRI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           +   + +    R     G+  PL  +E  +LE L+  RG+ + ++ I S ++ + FD   
Sbjct: 129 QVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVWDMNFDS-- 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 187 DTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLE 222


>gi|119476351|ref|ZP_01616702.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2143]
 gi|119450215|gb|EAW31450.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2143]
          Length = 236

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 109/234 (46%), Gaps = 30/234 (12%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIG- 55
            +++DD A +++  I +     + + GFN  E  +  ++      ++ D+  ++  L G 
Sbjct: 6   ILIVDDEAPIRE-MIRM----SLDMAGFNCREAADTREAYRVIADSKPDLVLLDWMLPGG 60

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G ++L   R     + +P+I ++        +   D G DD + KP   RE+L+R+ A+
Sbjct: 61  SGIELLRRLRKEELTADLPVIMLTAKTDEDNKIQGLDVGADDYITKPFAPREMLSRIKAL 120

Query: 116 YRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            RR         ++V   + +    RV+ D R  ++    F       R+L + M ++ +
Sbjct: 121 LRRTSTGIGGSVIEVQGLKLDISSHRVYIDTRPVDMGPTEF-------RLLSFFMTHQER 173

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGY 218
             ++ Q+   ++G  +  VEE  V+ HI +LRK L ++ G   + V + R  GY
Sbjct: 174 AYSRGQLLDHVWG-GNVYVEERTVDVHIRRLRKALESEGGCYNECVQTVRGTGY 226


>gi|152998395|ref|YP_001343230.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839319|gb|ABR73295.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 236

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 108/229 (47%), Gaps = 25/229 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGKG 57
           ++IDD + +++  IA+     + + G+  LE E   Q+       R D+  ++  +   G
Sbjct: 12  LIIDDESSIRE-MIAI----ALEMAGYEYLEAENIQQAHEIIVDHRPDLILVDWMM--PG 64

Query: 58  EKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              +EL R ++     +++P+I ++        +   + G DD + KP   RE++AR+ A
Sbjct: 65  GSGIELTRRLKKDTTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKA 124

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVA 169
           + RR   +  +    PI +     DP  Q          +   E R+L++LM ++ +  +
Sbjct: 125 VLRR---ATPQGVDEPIEIEGLTLDPISQRVTIGSRPLDMGPTEYRLLKFLMTHQERAYS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + Q+   ++G  +  VEE  V+ HI +LRK + +   F  + + R  GY
Sbjct: 182 RAQLLDQVWG-GNVYVEERTVDVHIRRLRKAIGSTHDF-LIQTVRGTGY 228


>gi|117619332|ref|YP_854542.1| KDP operon transcriptional regulatory protein KdpE [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560739|gb|ABK37687.1| KDP operon transcriptional regulatory protein KdpE [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 227

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 19/174 (10%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G +VL+    IR H Q P++ +S   S Q  +   D+G +D ++KP    E++AR+  
Sbjct: 58  GDGIQVLQ---AIREHHQHPVLVLSARDSEQEKVRLLDAGANDYMSKPFGIGEMMARIRV 114

Query: 115 IYR-RLKVSNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + R R  VS+      P   + + S      +  E  PL R+E  +L+ L+ + GK V +
Sbjct: 115 LLRQRAGVSSGEQRHFPQCGLTLDSSSHRVTLGEEEVPLSRKEFALLQALVCHPGKLVLQ 174

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLR-KKLRNKLGFDP-----VDSKRFLGY 218
           TQ+ + I+G        +  ++H  ++    LR KLG +P     ++++  +GY
Sbjct: 175 TQLLNDIWG------PSHKEDTHYLRIVIASLRKKLGDNPQQPTLIETESGIGY 222


>gi|24380274|ref|NP_722229.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans UA159]
 gi|290579753|ref|YP_003484145.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans NN2025]
 gi|24378286|gb|AAN59535.1|AE015017_1 response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans UA159]
 gi|6174678|dbj|BAA85986.1| gcrR [Streptococcus mutans]
 gi|254996652|dbj|BAH87253.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans NN2025]
          Length = 230

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      +I I+   S+   +   D G D  + KP    E+LARV AI+RR  +
Sbjct: 63  EVIRRLQLEKTTYVIIITARDSIMDIVTGLDRGADGYIVKPFAIEELLARVRAIFRRQDI 122

Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +  +     + D       R     GE  PL +RE  +L  L+ N  + + + ++ +
Sbjct: 123 EKAKHSSKNDTTYRDLKLDVHNRAAIRNGETIPLTKREFDLLNALVENINQVMTREELLA 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++  +D+  E NVV+ +I  LR K+        + + R +GY I  N
Sbjct: 183 RVWK-YDQEAETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYIIREN 229


>gi|254249049|ref|ZP_04942369.1| Response regulator [Burkholderia cenocepacia PC184]
 gi|124875550|gb|EAY65540.1| Response regulator [Burkholderia cenocepacia PC184]
          Length = 221

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 20/215 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIR 68
           L + G+      DG +  G   +E         R D+  ++A L G  G  VL   R +R
Sbjct: 20  LARLGHAVDLETDGATANGLLRVE---------RFDLVVLDANLPGMDGFTVL---RHLR 67

Query: 69  AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           A  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR     N   
Sbjct: 68  ASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHANDVL 127

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAV 185
           T G + +    R  E+ G+   L R+E  +LE ++A+R +R+ +K ++ + ++   +E  
Sbjct: 128 TLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKEELLNQLFSFGNEPT 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             N VE +++++RKKL+       + + R +GY I
Sbjct: 187 -ANAVEQYVTRVRKKLQGS--SVEIRTARGMGYQI 218


>gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 252

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 78  LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 137

Query: 121 -VSNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            VS +  E+          G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 138 LVSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 197

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 198 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 230


>gi|326792369|ref|YP_004310190.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543133|gb|ADZ84992.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 3/137 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           +R   + P+I I+     +  L  ++ G DD V KP     + A+V ++ +R K  +  +
Sbjct: 67  VRLRYETPIIFITAKSDEEDQLYGYELGADDYVTKPFSLGVLYAKVNSLIKRAKGTIIED 126

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           + +   I +     +  V GE   L   E R+L Y M N+ + + + Q+   ++G +D  
Sbjct: 127 KLKVNDICIDCKKLEVTVGGEEIKLAPMEYRMLVYFMRNKNQVITRDQLIVRLWG-YDFE 185

Query: 185 VEENVVESHISKLRKKL 201
             + V+++H+ KLRK L
Sbjct: 186 GNDRVIDTHVKKLRKAL 202


>gi|190350980|gb|ACE75886.1| CovR [Streptococcus pyogenes]
          Length = 228

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+L R+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLVRIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|115375995|ref|ZP_01463242.1| putative two component response regulator protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366994|gb|EAU65982.1| putative two component response regulator protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 244

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 7/171 (4%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           E L  + R     +   L+  G   LE+ R +R  S VP+I ++        +   ++G 
Sbjct: 50  EGLAEAGRHAYDVLLLDLMLPGRDGLEVCRELRTRSDVPIIMVTARGEEIDRVLGLETGA 109

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLP 150
           DD + KP   RE+LAR+ A  RR +  N      P+ V     DP      + G+   L 
Sbjct: 110 DDYLPKPYSSRELLARIRAQVRRAR-GNAGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLT 168

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E  +L  L    G+ +++ Q+   I G  DE  + + ++ HI +LR+KL
Sbjct: 169 SYEFNLLRVLAERAGRVLSREQLLDLIKGSADEVFDRS-IDVHIFRLRQKL 218


>gi|82546448|ref|YP_410395.1| DNA-binding transcriptional regulator BasR [Shigella boydii Sb227]
 gi|81247859|gb|ABB68567.1| transcriptional regulatory protein [Shigella boydii Sb227]
 gi|320183598|gb|EFW58442.1| Transcriptional regulatory protein basR/pmrA [Shigella flexneri CDC
           796-83]
 gi|332087317|gb|EGI92446.1| transcriptional regulatory protein basR/pmrA [Shigella boydii
           3594-74]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E  QS      S +   L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ 
Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IY  +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYMLVAN 219


>gi|309972896|gb|ADO96097.1| Probable two-component regulator,transcriptional regulatory
           component QseB [Haemophilus influenzae R2846]
          Length = 221

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAET 128
           H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A I RR    ++  E 
Sbjct: 70  HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGHHHSVIEQ 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             +++  + R   +  +   L  RE ++LE  M N+ + +++T I   +   +DE +   
Sbjct: 130 SGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKLSS-WDEEISSG 188

Query: 189 VVESHISKLRKKL 201
            ++ HI  LR+KL
Sbjct: 189 ALDVHIYNLRQKL 201


>gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 235

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 17/172 (9%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +R   +   +P+I ++        +   + G DD V KP   RE++ARV A  R
Sbjct: 61  LEVCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARLR 120

Query: 118 R----LKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           R    +K ++ + E     GP+ V     +  + GE   L  +E  +L  L+ N GK  +
Sbjct: 121 RRTGLIKHADRKVEEEIAYGPLVVRPARYEVFLNGEKLDLTLKEYELLVLLINNPGKVFS 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR---NKLGFDPVDSKRFLGY 218
           +  + S I+G FD   +   V+ HI  LR+K+    ++ GF  +++ R +GY
Sbjct: 181 RDFLLSTIWG-FDYTSDTRTVDVHIYHLRQKIERDPSQPGF--IETVRGVGY 229


>gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K     +
Sbjct: 68  IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSI 127

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N++  E G + V +D     V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 128 EHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIYEAVWK 187

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208


>gi|256823584|ref|YP_003147547.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256797123|gb|ACV27779.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 227

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 21/192 (10%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQ 72
           GYI  +  DG+S  G N       L  + + D   ++  L G  G  + +  R   A S 
Sbjct: 26  GYIVDYAMDGIS--GLN-------LAKNNQYDALILDVMLPGMDGFTICQRIRQ-EAQSD 75

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P++ ++    L   LD FD+G DD + KP    E+ AR+ AI RR K      ++ P+ 
Sbjct: 76  IPILMLTARDQLSDKLDGFDAGADDYLIKPFDFEELDARLNAIIRRHK---GELDSKPLV 132

Query: 133 VFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           +     DP+      QG+   L      IL+ LM    + V + ++   ++G  D     
Sbjct: 133 IHDLELDPKTLQVKRQGQKLKLSPTGLHILKLLMRKSPEVVTREELERELWG--DLVPNS 190

Query: 188 NVVESHISKLRK 199
           +V+ SH+  LRK
Sbjct: 191 DVLRSHLYNLRK 202


>gi|182416533|ref|ZP_02947960.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237668894|ref|ZP_04528878.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379605|gb|EDT77087.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657242|gb|EEP54798.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 234

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 103/212 (48%), Gaps = 18/212 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEK 59
            ++++D   + DG      + G ++ + +N +E  E ++   +E +  AI   ++ K + 
Sbjct: 6   ILIVEDEKEICDGIEIYLKNQGYTVFKAYNGIEGLEIIE---KEKIHLAIVDIMMPKMDG 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +  + ++ R     P+I +S        +   + G DD V KP +  E++ARV +  RR 
Sbjct: 63  ITMVMKL-REQHDFPVIMLSAKSEEMDKIMGLNIGADDYVTKPFNPMELIARVNSQLRRY 121

Query: 119 ---LKV-SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
              LKV  NN  +T     G I + +D ++  V G++  +  +E  IL  LM N G+  +
Sbjct: 122 AKYLKVLKNNEKKTNLFVVGGIELNTDTKEVTVDGDIVKMTPKEFNILHLLMKNPGRVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             +I+  ++   ++A+    +  H+  +R+K+
Sbjct: 182 AEEIYERVWK--EDAISTETIMVHVRNIREKI 211


>gi|126698400|ref|YP_001087297.1| two-component response regulator [Clostridium difficile 630]
 gi|254974439|ref|ZP_05270911.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091831|ref|ZP_05321309.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255099933|ref|ZP_05328910.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255305822|ref|ZP_05349994.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255313566|ref|ZP_05355149.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255516250|ref|ZP_05383926.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649348|ref|ZP_05396250.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306519438|ref|ZP_07405785.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115249837|emb|CAJ67654.1| Two-component response regulator [Clostridium difficile]
          Length = 230

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 17/177 (9%)

Query: 42  AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           +++D   +   ++  G    E    IR +S +P++ ++      + +    +G DD + K
Sbjct: 42  SKQDYQLVVLDVMMPGMDGFETMEQIRKYSSIPILMLTSKSDNYSKVHGLRAGADDYLTK 101

Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERR 155
           P    E  ARV ++ RR    N + E      F       D       GE   LP +E  
Sbjct: 102 PFEITEFTARVLSLIRRYTRFNPKNEEPQQLSFKGLLIDLDQHTVTTNGEPMLLPPKEFG 161

Query: 156 ILEYLMANRGKRVAKTQIFSAIYG---LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +L Y   ++GK + K QI+ A++G   ++D        +S+I  +  +LR K+  DP
Sbjct: 162 VLLYCARHQGKILTKQQIYEAVWGEPYVYD--------DSNIMAIISRLRKKIELDP 210


>gi|73540232|ref|YP_294752.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72117645|gb|AAZ59908.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +RA  + +P++ ++    +   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLKRLRARGAMLPVLILTAADGVDERVKGLDLGADDYMAKPFALSELEARVRALVRRG 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 120 AGGGATLMRHGPLAFDQVGRIAYMNEQMLDLSAREVGLLEILLTRCGRLVSKEQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKK+  ++G   + + R LGY ++
Sbjct: 180 E-WGEEVSNNAIEVYVHRLRKKI--EVGGIRIATVRGLGYCLE 219


>gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ A +RR  +
Sbjct: 63  EVTRRLQQEKNTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +        + D +  +VQ        E  PL +RE  +L  L++N  + + + ++ 
Sbjct: 123 EATKNAPAKASTYRDLK-LDVQNRAVIRGDEAIPLTKREFDLLNTLLSNMNQVMTREELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 182 LQVWK-YDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 233

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 22/224 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           + K+GY  L   DG            E L+  A E+   I   L+      LE+ R IR 
Sbjct: 21  MAKEGYEVLTAFDG-----------REALEVFAAENPDIIILDLMLPEIDGLEVARTIRK 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NN 124
            S VP+I +S   +    +   + G DD V KP  +RE+ ARV A+ RR + +      N
Sbjct: 70  TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEFAADPQLEN 129

Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            A+T    G + +  D    +   +   L  RE  +L +L  + G+ + +  +   ++G 
Sbjct: 130 EADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREHLLETVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
           +D   +   V+  + +LR+K+ +  G  + + ++R +GY +  N
Sbjct: 189 YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|307130078|ref|YP_003882094.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Dickeya dadantii 3937]
 gi|306527607|gb|ADM97537.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Dickeya dadantii 3937]
          Length = 173

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 18/160 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I +S     Q  ++  D+G DD + KP    E+LARV    RR   S  
Sbjct: 13  RDLRQWSAIPVIVLSARTDEQDKINALDAGADDYLTKPFGIGELLARVRVALRRF--STT 70

Query: 125 RAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + ET P+  FS+     V  +V        L   E R+L  L+AN GK + + Q+ + ++
Sbjct: 71  QQET-PLITFSNVTVDLVNRQVIRDQQELHLTPIEFRLLSTLLANPGKVLTQRQLLNQVW 129

Query: 179 GLFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216
           G        N VE SH  ++    LR KL  DP   + FL
Sbjct: 130 G-------PNAVEHSHYLRIYMGHLRQKLEDDPARPRHFL 162


>gi|225575152|ref|ZP_03783762.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037619|gb|EEG47865.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
           10507]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 2/138 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
           +I R  S +P+I ++   S    L  +D G DD + KP   + +LA+  A+ RR   +  
Sbjct: 65  KIAREMSNLPIIMLTAKGSEDDKLKGYDLGADDYMTKPFSPKVLLAKANALLRRSSLLPA 124

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G I +        V G+   L  +E  +L + M N  +  ++ Q+ + I+G +D 
Sbjct: 125 DTINAGKISLVPASHKVFVNGKEIVLTHKEYELLYFFMVNPEQIFSREQLLNRIWG-YDF 183

Query: 184 AVEENVVESHISKLRKKL 201
                 V++HI  LR+KL
Sbjct: 184 EGTTRTVDTHIKTLRQKL 201


>gi|221195251|ref|ZP_03568307.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
 gi|221185154|gb|EEE17545.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
          Length = 241

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 17/215 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAFLIG-KGE 58
            ++++D  +++D   A    +  ++ G    +   EE+ + S   D+  ++  L    GE
Sbjct: 8   ILIVEDETVIRDAVSAYLERENYAVRGVGDGQSAVEEFQKHSF--DLVILDLMLPKLSGE 65

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +V    R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++RR
Sbjct: 66  RVC---RAIRDVSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRR 122

Query: 119 L-KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             K S  + E    G + +   G    ++GE   L   E ++L  L    G+  ++ ++ 
Sbjct: 123 AHKESEPQPEVLEYGALTIDISGHKILIRGEEVDLTASEFKLLTTLARYPGRVYSRMELV 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             + G +D    E  ++SH+    K LR KLG DP
Sbjct: 183 EKVLG-YDFEGYERTIDSHV----KNLRAKLGDDP 212


>gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
 gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
          Length = 238

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-----KV 121
           IR  S VP+I ++        +  F+ G DD + KP +  E+ ARV A+ RR      K 
Sbjct: 77  IREFSNVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRRAGMAAQKE 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R   G I + +D R          L  +E  ++E LM N G+  ++  + + ++G +
Sbjct: 137 KKARLTAGHIVIDADERSAWKGETPVDLTAKEFDLIELLMRNPGRVYSRENLLNVVWG-Y 195

Query: 182 DEAVEENVVESHISKLRKKL 201
           + A +   V+ H+ +LR+KL
Sbjct: 196 EYAGDYRTVDVHVRRLREKL 215


>gi|149374614|ref|ZP_01892388.1| Two component Transcriptional regulator, Winged helix family
           protein [Marinobacter algicola DG893]
 gi|149361317|gb|EDM49767.1| Two component Transcriptional regulator, Winged helix family
           protein [Marinobacter algicola DG893]
          Length = 245

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D+  + +      G+D   L+    G  +L     L ++   DV  ++  L   G
Sbjct: 15  LLIVEDQVDLAENLFEFLGEDRYCLDFAADGLTALH----LLATQSYDVIVLDLML--PG 68

Query: 58  EKVLELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               ++ R IR     Q P+I ++   +L      FD G DD + KP   RE+  R+ A+
Sbjct: 69  VNGFDVCRRIREDLRCQTPIILMTSLSALNDKEKGFDCGADDYLVKPFELRELQLRIEAL 128

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +RR        + G IR      + E+ G    L     R+ E LM      +  T +  
Sbjct: 129 HRRHSPLKPVLQAGEIRFDPGTLEVELHGLKTTLSGTSSRLFELLMRAYPNFLGHTTLTD 188

Query: 176 AIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++G   + +A E N + + +  LRK L+  LG   + +    GY ++
Sbjct: 189 ALWGGARYGDA-EGNNLRTQVYTLRKSLQGSLGNGLIKTIHGRGYRLE 235


>gi|146307023|ref|YP_001187488.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575224|gb|ABP84756.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L++D   + D   A     G +++         +  +S   D+  ++  L GK G +V
Sbjct: 3   LLLVEDHVPLADELTASLTRQGYAVDWLADGRDAAYQGASEPYDLIILDLGLPGKPGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R        P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 63  LQEWRA--GGLSTPVLVLTARGSWAERIEGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 VSNNRAETGPIRV-FSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+ +     +   + R     G EV  L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPQLEAAGLQLDESRQCVTSGDEVIDLTAAEFRLLRYFMLHPGQILSKSHLADHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               E  + NV+E H++    +LR KLG + ++++R  GY
Sbjct: 181 DGETER-DSNVIEVHVN----RLRGKLGRNVIETRRGQGY 215


>gi|146300485|ref|YP_001195076.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146154903|gb|ABQ05757.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 226

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 4/133 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAET 128
           + P+I ++ +  ++  L  FDSG DD + KP H  E+ AR++++ RR ++   +  +   
Sbjct: 72  KTPIIMLTAFSEIEDKLASFDSGADDYLVKPFHFEELYARISSLLRRKEIPQQTEKKIII 131

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             + +  D       GE   L  +E +++  L   +GK ++K  I   ++    E   +N
Sbjct: 132 EDLEILEDEMKVLRSGEEIKLTPKEFKLILILAHAKGKVLSKQFIAEKLWDYHIET-NQN 190

Query: 189 VVESHISKLRKKL 201
            +E +I+ LRKK+
Sbjct: 191 TIEVYINFLRKKI 203


>gi|30265130|ref|NP_847507.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530640|ref|YP_021989.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187941|ref|YP_031194.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65317076|ref|ZP_00390035.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869987|ref|ZP_02214644.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167641774|ref|ZP_02400016.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689385|ref|ZP_02880578.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|190569222|ref|ZP_03022118.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227817862|ref|YP_002817871.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229603464|ref|YP_002869323.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686468|ref|ZP_05150327.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724467|ref|ZP_05186251.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254735675|ref|ZP_05193382.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744239|ref|ZP_05201919.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254750967|ref|ZP_05203006.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254756991|ref|ZP_05209019.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259807|gb|AAP28993.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505788|gb|AAT34464.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181868|gb|AAT57244.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714310|gb|EDR19830.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510257|gb|EDR85661.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170666681|gb|EDT17451.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|190559662|gb|EDV13651.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227004971|gb|ACP14714.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229267872|gb|ACQ49509.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 225

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRR-SG 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223


>gi|310814679|ref|YP_003962643.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ketogulonicigenium vulgare Y25]
 gi|308753414|gb|ADO41343.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ketogulonicigenium vulgare Y25]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 14/173 (8%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +E+ R I+A ++   +P+I +S        +   ++G DD V KP    E+LAR  
Sbjct: 61  GVSGIEICRQIKARAETRAIPVIMLSARSEEGDKVRGLETGADDYVTKPYSITELLARAR 120

Query: 114 AIYRRLKVSNNRAETGPIRVFSD----GRDPEVQ--GEVFPLPRRERRILEYLMANRGKR 167
           A  RR +     A  G +  F D    G    V   G    L   E R+L  LM   G+ 
Sbjct: 121 AQLRRTRP----ATIGGVLRFEDITLDGETHRVTRDGNELRLGPTEFRLLTTLMERPGRV 176

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ Q+   ++G  D  V+   V+ H+ +LRK L    G DP+ + R  GY++
Sbjct: 177 WSREQLLDRVWG-RDIYVDSRTVDVHVGRLRKALMIHGGTDPLRTVRGAGYAL 228


>gi|227329793|ref|ZP_03833817.1| DNA-binding transcriptional activator KdpE [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 226

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 16/159 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I +S     Q  +D  D+G DD + KP    E+LAR+    RR   SN 
Sbjct: 66  RDLRQWSSLPVIVLSARTDEQDKIDALDAGADDYLTKPFGIGELLARLRVALRR--HSNT 123

Query: 125 RAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ET     G I V    R     G+   L   E R+L  L+A+ GK + + Q+ + ++G
Sbjct: 124 QQETPLVSFGNITVDLLNRQVNRDGQELHLTPIEFRLLATLLASPGKVLTQRQLLTQVWG 183

Query: 180 LFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216
                   N VE SH  ++    LR KL  DP   +  L
Sbjct: 184 -------PNAVEHSHYLRIYMGHLRQKLESDPARPRHLL 215


>gi|237729610|ref|ZP_04560091.1| tricarboxylic transport regulatory protein [Citrobacter sp. 30_2]
 gi|226908216|gb|EEH94134.1| tricarboxylic transport regulatory protein [Citrobacter sp. 30_2]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 19/218 (8%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65
           ++ALV++G    F  D V    F+ L  +  L S    +  A+    I   G   LE+ +
Sbjct: 17  EKALVQNG----FAVDCV----FDGLAADHLLHS----ETYALAVLDINMPGLDGLEVVQ 64

Query: 66  IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
            +R   Q +P++ ++   ++   +   + G DD + KP    E+ AR+ A+ RR     +
Sbjct: 65  RLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLAKPFEIEELDARLRALLRRSAGQVH 124

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             +      F D     +QG+   L  RE+ +L  LM  R + V++ Q+F  ++ L DE 
Sbjct: 125 GIQQLGELAFHDEGYFLLQGQPLALTPREQALLTVLMYRRLRPVSRQQLFEQVFSLSDEV 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             E+ +E +I +LRKKL+   G D  + + R LGY ++
Sbjct: 185 SPES-IELYIHRLRKKLQ---GSDVRIATLRGLGYVLE 218


>gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 236

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 18/189 (9%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           R D+  ++  L G+    +++ R +R    VP+I ++   S    +   + G DD V KP
Sbjct: 45  RPDLILLDVMLPGRDG--MDVCRTVRQTYDVPIIMLTAKDSELDKVLGLELGADDYVTKP 102

Query: 103 IHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
              RE++ARV A  RR       K S +      + +  +    E  GE   L  RE  +
Sbjct: 103 FSTRELVARVKAHLRRNRSKVEEKDSQHVLRVHELEIDLNSYTVEKVGEALELTHREFEL 162

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VD 211
           L YL  ++G+ + +  +  +++G FD   +   V+  I +LR+K+ +    DP     + 
Sbjct: 163 LVYLARHQGQVLTREHLLQSVWG-FDYFGDVRTVDVTIRRLREKIED----DPSQPKYII 217

Query: 212 SKRFLGYSI 220
           ++R LGY++
Sbjct: 218 TRRGLGYTL 226


>gi|259908742|ref|YP_002649098.1| DNA-binding transcriptional regulator PhoP [Erwinia pyrifoliae
           Ep1/96]
 gi|224964364|emb|CAX55873.1| Two-component response regulator of virulence determinants [Erwinia
           pyrifoliae Ep1/96]
 gi|283478715|emb|CAY74631.1| Response regulator phoP [Erwinia pyrifoliae DSM 12163]
 gi|310767361|gb|ADP12311.1| DNA-binding transcriptional regulator PhoP [Erwinia sp. Ejp617]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132
           P++ ++     Q  ++  ++G DD V KP H  E++AR+ A+ RR   +++      P +
Sbjct: 74  PILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMRRNCGLASQIITLQPFQ 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V    R+  +      L   E  I+E L+ N GK V+K  +   +Y    E  E + ++ 
Sbjct: 134 VDLSRRELTINDRQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLYP-DAELRESHTIDV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +LRKK++ +   + + + R  GY  D
Sbjct: 193 LMGRLRKKIQAEHAQEVITTVRGQGYRFD 221


>gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 2/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F+ G DD + KP    E++ARV A+ +R ++
Sbjct: 62  ELCRELRDYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++  + G + +     +  +  +   LP +E  +L  L +  GK   + ++   I+G 
Sbjct: 122 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 181 YDYDGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 221


>gi|327438192|dbj|BAK14557.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 237

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 21/203 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+K+GY  +   DG           +E LQ    E    +   ++      +E+ R +R 
Sbjct: 23  LIKEGYRVICAYDG-----------DEALQRVEEEQPDLMLLDIMLPKRDGMEVCREVRK 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNR 125
               P+I ++   S    +   + G DD V KP   RE++ARV A  RRL    ++   +
Sbjct: 72  KYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLNVPAQIEEAQ 131

Query: 126 AETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           AET  I V S    P+      + E   L  RE  +L YL  + G+ + +  +   ++G 
Sbjct: 132 AETNDIVVGSLTIQPDAYLVLKRDESIELTHREFELLHYLAKHIGQVMTREHLLQTVWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
           +D   +   V+  I +LR+K+ +
Sbjct: 191 YDYFGDVRTVDVTIRRLREKIED 213


>gi|325284509|ref|YP_004257048.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324316683|gb|ADY27794.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 16/193 (8%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LV +G+  L   DG     F + E         R D++ I+  L   G   ++L R  RA
Sbjct: 21  LVAEGHTVLSASDG-----FGARE------GLPRADLAIIDWML--PGVSGMDLVREARA 67

Query: 70  HS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
              Q+P++ ++     +  L   D GVDD V KP   RE++ARV A+ RR+ V       
Sbjct: 68  ADMQLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVMARVRALLRRVGV-REEVSI 126

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +        + G    L + E  +L  L  + G    + ++   ++G  D    E 
Sbjct: 127 GDLSIDLRSHTASLSGLPLELSKLEFDLLTALAQHPGMAWTRERLLERVWG-SDFLGTER 185

Query: 189 VVESHISKLRKKL 201
           VV+ HI+ LRKKL
Sbjct: 186 VVDVHITGLRKKL 198


>gi|309803319|ref|ZP_07697416.1| putative response regulator protein GraR [Lactobacillus iners
           LactinV 11V1-d]
 gi|309808071|ref|ZP_07701989.1| putative response regulator protein GraR [Lactobacillus iners
           LactinV 01V1-a]
 gi|309809933|ref|ZP_07703781.1| putative response regulator protein GraR [Lactobacillus iners SPIN
           2503V10-D]
 gi|325913033|ref|ZP_08175406.1| putative response regulator protein GraR [Lactobacillus iners UPII
           60-B]
 gi|329921089|ref|ZP_08277612.1| putative response regulator protein GraR [Lactobacillus iners SPIN
           1401G]
 gi|308164827|gb|EFO67077.1| putative response regulator protein GraR [Lactobacillus iners
           LactinV 11V1-d]
 gi|308168673|gb|EFO70773.1| putative response regulator protein GraR [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169721|gb|EFO71766.1| putative response regulator protein GraR [Lactobacillus iners SPIN
           2503V10-D]
 gi|325477713|gb|EGC80852.1| putative response regulator protein GraR [Lactobacillus iners UPII
           60-B]
 gi|328934996|gb|EGG31485.1| putative response regulator protein GraR [Lactobacillus iners SPIN
           1401G]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 6/156 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I I+ +      +     G D+ + KPI     +A++ A+ RR    KV +
Sbjct: 66  IRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYDYKVGS 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G +++       E +  V  L R E  ILE L  N   ++AK +         D 
Sbjct: 126 DSIMYGDLKLNLSVAHLEGKNFVLELTRTELLILEILF-NFKNKIAKREAIINYCWQGDA 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            +++N +  +I++LRKKL+  +G+D  + +K+ +GY
Sbjct: 185 FIDDNTLAVNIARLRKKLKT-VGYDELIQTKKGIGY 219


>gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075465|gb|ADJ64864.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 220

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 6/200 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D  ++ DG   +    G ++   N+    + L       V  ++  L G  G +VL
Sbjct: 4   LLVEDDPVLTDGLSRVLNSHGFTVHTVNN--GNDALSQRFNAAVLVLDIGLPGIDGFEVL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R+  A +  P++ ++   ++   +   + G DD + KP    E++AR+ A+ RR   
Sbjct: 62  R--RMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAP 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +   G + + +  +  ++ G    L  RE  +LEYLM +  + V+K QI  A+   +
Sbjct: 120 QPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP-W 178

Query: 182 DEAVEENVVESHISKLRKKL 201
            E    N VE ++S++R K+
Sbjct: 179 GEDFTINAVEVYVSRIRLKI 198


>gi|295108183|emb|CBL22136.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 220

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 3/158 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR     P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKKIRTLVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARIHAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   +  +   L + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLMDDKELSLTKAEYEICEFLAKNRGQVFSKEQILEKVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD    ++ + +HI  +R K   +  + P+ +   +GY
Sbjct: 180 FDSESNDSTIITHIKNIRSKFA-EYNYTPIKTVWGIGY 216


>gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 235

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 121 -VSNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            VS +  E+          G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LVSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213


>gi|237750902|ref|ZP_04581382.1| two-component system response regulator [Helicobacter bilis ATCC
           43879]
 gi|229373347|gb|EEO23738.1| two-component system response regulator [Helicobacter bilis ATCC
           43879]
          Length = 221

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 20/157 (12%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAET 128
           + +VP+I + D    +  +  F  G DD ++ P  +  +LAR+ A   RLK+++ N  E 
Sbjct: 70  YPKVPVIILGDNEP-KHEVQSFKFGADDYLSCPFDNEVLLARIQA---RLKLTDSNLIEI 125

Query: 129 GPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           G I +  D       G+D EV+G+ F        +L +L   R + V+K Q+ +AI+   
Sbjct: 126 GDIVIIPDEERITFKGKDIEVKGKPF-------EVLTHLARQRDQIVSKDQLLNAIWD-E 177

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            E V  NV+E  I+++R+++   L  + +++ R  GY
Sbjct: 178 PELVTPNVIEVAINQIRQRMDKPLNINTIETVRRRGY 214


>gi|255036915|ref|YP_003087536.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254949671|gb|ACT94371.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 225

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 2/138 (1%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPE 141
           +L+  L   + G DD + KP H  E+ ARV ++ RR     NN      IRV    R   
Sbjct: 83  TLEDKLKGLEIGSDDYMTKPFHLSELNARVKSLIRRRNFGGNNDMTWKDIRVNLPARKVF 142

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKK 200
           ++     L ++E  +L Y ++N    + K  I   ++G   D A   ++V SHI  LR+K
Sbjct: 143 IKDIETTLSKKEYDLLLYFLSNIDVALTKESIAEHLWGDNMDSADSLDMVYSHIKNLRRK 202

Query: 201 LRNKLGFDPVDSKRFLGY 218
           +  K G D + S   +GY
Sbjct: 203 IVEKGGKDYIQSIYGIGY 220


>gi|227510397|ref|ZP_03940446.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190049|gb|EEI70116.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR +  +P++ ++    +   +   D+G DD + KP    E+LAR+  + R   
Sbjct: 75  LEVLRRIRQNDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLRH-- 132

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            S N+A +  +    D       R       +  L +RE  +L  L+ N G+ + + ++ 
Sbjct: 133 -SQNQATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYELLLTLIKNAGETMTRDELL 191

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + ++G+  E  + NVV+ +I  LR K+        + + R +GY +  N
Sbjct: 192 NLVWGVDFEG-QPNVVDVYIRYLRNKVDRNFKKTLIHTVRGVGYVLSAN 239


>gi|254517943|ref|ZP_05129999.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium sp. 7_2_43FAA]
 gi|226911692|gb|EEH96893.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium sp. 7_2_43FAA]
          Length = 227

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 7/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I A   +P+I ++    +   +   + G DD + KP H +E+ +R+ A++RR++ S ++ 
Sbjct: 68  INAKYTIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFRRIEKSASKD 127

Query: 127 ETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               I++ S      + R      EV  L  +E  +LE+ + NR K  ++ Q+   I+  
Sbjct: 128 NKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSREQLIDNIWE- 186

Query: 181 FDEAVEENVVESHISKLRKKL 201
           F    +   V+ HI ++R KL
Sbjct: 187 FSYDGDIRTVDIHIRRIRSKL 207


>gi|209550917|ref|YP_002282834.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536673|gb|ACI56608.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 225

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +RA  +Q  ++ ++   + +  +   D G DD + KP    E  ARV  + RR 
Sbjct: 60  LDVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDISEFEARVRVLLRRQ 119

Query: 119 LKVSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             + +     G I      R FS G  P        +P RE  +LE L    GK VAK  
Sbjct: 120 AGLRSATVSFGGISFDLNSRAFSAGATP------LDIPARELGLLEILFMRAGKVVAKEA 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I  ++   FD+ +  N +E ++S+LRK+L +  G   V + R +GY +D
Sbjct: 174 IIQSLTA-FDDDISSNAIEQYVSRLRKRL-SPHGL-TVKTARGIGYYLD 219


>gi|167763747|ref|ZP_02435874.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC
           43183]
 gi|167697863|gb|EDS14442.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC
           43183]
          Length = 227

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 4/159 (2%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           I R +  VP++ ++   +    L+ FDSG DD + KP   RE+ AR++ + +R ++    
Sbjct: 67  IRRQNETVPILILTALGTTDDKLEGFDSGADDYMVKPFDFRELNARISILLKRCQIPTVE 126

Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183
             E   ++V+   +     G+   L  +E  +L + + N  + + +T+I   ++   FD 
Sbjct: 127 CIEYADLKVYLRTKSVSRNGQSIILTPKEYNLLLFFVQNPERILTRTEIAEKVWDTHFDT 186

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
               N ++ +I+ LRKK+        + +K  +G+   +
Sbjct: 187 GT--NFIDVYINYLRKKIDKNFNTKLIHTKPGMGFIFSY 223


>gi|152994457|ref|YP_001339292.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835381|gb|ABR69357.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 19/163 (11%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------- 118
           A   +P++ +S   S+   +     G DD + KP    E+LARV  + RR          
Sbjct: 69  AQKTLPVLILSALDSVDERVKGLREGGDDYLVKPFAFAELLARVEILIRRQPMAAVQQST 128

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+VS+ + +    +V+  GR+  +Q + F       +IL YLM +  + V +T +F A+
Sbjct: 129 LLQVSDLKMDLLTRQVWRAGREISLQPKEF-------QILRYLMEHPKQVVTRTLLFEAV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NV++ H+++LRKK+        +++ R +GY +
Sbjct: 182 WD-YDFDPQTNVIDVHVARLRKKVETDDLPPILETIRGVGYRL 223


>gi|71282474|ref|YP_267951.1| phosphate regulon response regulator PhoB [Colwellia
           psychrerythraea 34H]
 gi|71148214|gb|AAZ28687.1| phosphate regulon response regulator PhoB [Colwellia
           psychrerythraea 34H]
          Length = 233

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 3/149 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-- 129
            +P+I ++        +  F++GVDD V KP   +E++AR+ A+ RR+  ++   E    
Sbjct: 76  NIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKELIARIKAVIRRVSPTSLEEEVDFH 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +++        + G    L   E R+L + M +  +  ++ Q+   ++G  +  VE+  
Sbjct: 136 GLKLDPVAHRVAINGNSLDLGPTEFRLLHFFMTHTERVYSREQLLDNVWGT-NIYVEDRT 194

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+ HI +LRK +  +   D V + R  GY
Sbjct: 195 VDVHIRRLRKAISGEGHEDFVQTVRGAGY 223


>gi|313885774|ref|ZP_07819521.1| putative sensory transduction protein RegX3 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619001|gb|EFR30443.1| putative sensory transduction protein RegX3 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 216

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 77/155 (49%), Gaps = 4/155 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I ++ +      +D F +  D  + KP     +  R+  + ++   + ++ 
Sbjct: 65  IRKKSDLPVIMLTAFGDEDYKIDAFTNFADGYIQKPFSLPVLKVRIETLLKKYYGTTDQF 124

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               + V       +++GE+     +E  +L+YL +N G+ V ++QI   ++   DE   
Sbjct: 125 VYKDVEVNFLNYTAKLKGEIVDSKVKELEVLKYLSSNEGRVVTRSQILDNVWKDSDEIPF 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 185 DRVIDVYIKELRKKLQ----LDCIVTVRNVGYKLE 215


>gi|294620355|ref|ZP_06699666.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|291593409|gb|EFF24972.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
          Length = 221

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A   +P++ I+     +     F  G DD + KPI   E++ RV A+ RR K++ +   T
Sbjct: 70  ARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKINYSSILT 129

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G  ++  D          F LP++E  +L  L++   K   + Q+   I+GL D   EE
Sbjct: 130 IGQTKLELDTYTVVQNQHSFILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL-DTNTEE 188

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++ HI +LR +      F  + + R LGY
Sbjct: 189 RTIDVHIKRLRTRFEKTEDFQII-TVRGLGY 218


>gi|257093278|ref|YP_003166919.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045802|gb|ACV34990.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 235

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 8/154 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122
           R +RA S++P++ +S   +    +   D+G DD + KP    E+LARV A  RR   S  
Sbjct: 69  RDLRAWSEIPVLVLSARTTEIDKVAALDAGADDYLTKPFGAAELLARVRAHLRRRSRSAG 128

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               AE G IRV    R  E  G    L   E R+L YL+AN    +   Q+   ++G  
Sbjct: 129 GTALAEFGSIRVDLARRTVERDGAPLHLTPIEYRLLSYLIANPDCVLTHRQLLKNVWGP- 187

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
               + + V  ++  LRKK+ +    DP   K  
Sbjct: 188 GHVEDSHYVRVYMGNLRKKIED----DPARPKHL 217


>gi|326201397|ref|ZP_08191269.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988965|gb|EGD49789.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 234

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 14/161 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  SQ+P+I ++   +    L     G DD ++KP     +LAR+ A+ RR    + +A
Sbjct: 81  LRKTSQIPVIFVTSRNTSMDELRALSLGGDDFISKPYDLPILLARIQALLRR----SGQA 136

Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           E   + V          + E  G+   + + E +IL  LM   GK V+++ +   I  L+
Sbjct: 137 EKDILTVNGLTLSLPNWEIEHNGQRADITKNEAKILSCLMKTPGKIVSRSDL---IEYLW 193

Query: 182 DEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  V  ++N +  ++++LR KL N    D V +KR LGY I
Sbjct: 194 DNQVYIDDNTLSVNVTRLRGKLNNIGLPDYVKTKRGLGYKI 234


>gi|254518597|ref|ZP_05130653.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912346|gb|EEH97547.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 228

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 6/153 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE+   IR  S VP+I ++     +  L  ++ G DD + KP   + ++A+V A+ 
Sbjct: 65  GITVLEM---IRKVSTVPVILLTAKGQEEDKLFGYEMGADDYITKPFSPKILIAKVKALL 121

Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +R      +   E   + +     + +V  E+  L  +E  +L YL  N G  +++  I 
Sbjct: 122 KRTSEDTFSGLNEYDGLTINKLSHEVKVNNEIINLSPKEFELLSYLSDNEGIALSRDTIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
             ++GL D   +   V+++I +LR+KL NK  +
Sbjct: 182 DNVWGL-DYYGDLRTVDTNIKRLREKLGNKASY 213


>gi|254432170|ref|ZP_05045873.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197626623|gb|EDY39182.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 240

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 13/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   + 
Sbjct: 59  RRLRAESCVPIIFLSALDAIAERVSGLDLGADDYLPKPFSPKELEARIATILRRVGRGSA 118

Query: 125 RAE-------TGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            AE       TG +R     V ++ R     GE   L   E  +LE L    G+ V + +
Sbjct: 119 SAEPREQPSGTGVLRLGDLVVDTNRRQVTRDGERIALTYTEFSLLELLFREPGRVVPRAE 178

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201
           I   ++G     A +  VV+ ++++LR KL
Sbjct: 179 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 208


>gi|154252716|ref|YP_001413540.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154156666|gb|ABS63883.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 243

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 13/150 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE  L+L R +R  S +P++ ++        +D  + G DD + KP   RE+L R+  I 
Sbjct: 79  GESGLDLTRDLRQKSSIPILMLTARGEAGDRIDGLERGADDYLAKPFEPRELLLRIGTIL 138

Query: 117 RRLKVSNNR----AETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKT 171
           RR + +  R       GP R F+  R     G+    L  RE +++    AN GK +++ 
Sbjct: 139 RRTQAAGARRHDEINLGPCR-FNITRGELWNGDTQIRLTTREIQLMRIFAANPGKPLSRL 197

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
                   L D    E  ++  I++LR+KL
Sbjct: 198 D-------LCDNEAAERSIDVQINRLRRKL 220


>gi|170722475|ref|YP_001750163.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760478|gb|ACA73794.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 220

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 15/167 (8%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL R +RA    +P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IELLRRVRAGGDSLPVLILTARDALDDRITGLDAGADDYLVKPFDLNELKARLRALLRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             S  RA+   I       DP  Q     G    L  +E  +L  L+A  GK   + ++ 
Sbjct: 119 --SAGRAKV-LIEHAGVSLDPATQQVHYHGVEVVLTPKEYVLLHELLAQPGKVFTRERLT 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +YG +DE  E N +E +I  LRKKL N L    + + R +GY ++
Sbjct: 176 QLLYG-WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217


>gi|254976866|ref|ZP_05273338.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094253|ref|ZP_05323731.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255316006|ref|ZP_05357589.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518663|ref|ZP_05386339.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651785|ref|ZP_05398687.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684811|ref|YP_003216096.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688469|ref|YP_003219603.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521574|ref|ZP_07407921.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260210974|emb|CBA66251.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214486|emb|CBE06969.1| two-component response regulator [Clostridium difficile R20291]
          Length = 225

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 23/208 (11%)

Query: 15  YIALFGDDGVSLEGFNSLEFEE-----WLQSSAREDVSAIEAFLIGKGEKVLELPRI--- 66
           Y  L  DD V +   N + F       +   +A++ +  +E  ++      + LP I   
Sbjct: 2   YNLLVVDDDVDILNINQIYFSNIGFNVYTSETAKDAMDIVERIVLDCIILDISLPDIDGY 61

Query: 67  -----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                I+    +P+I +S+Y   +  +  F +G DD + KP   +E+  R   IY R++ 
Sbjct: 62  KMCNDIKEKVNIPIIFLSNYEHEEEKVRGFLAGGDDYITKPYSLKELELR---IYARMRQ 118

Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N      +  FS      + R     GE   L   E  IL +L  N+ +  +K +I++
Sbjct: 119 YKNITSVPNVLKFSALVINVNSRKVTFDGESIDLTTMEFEILLFLAENKEQVFSKIEIYN 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ + D   +++ V+ HI+++RKK+ +
Sbjct: 179 QVWKMPDIG-DQHTVQVHIAQMRKKINS 205


>gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis]
          Length = 233

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F       E F + + EE L++        I   L+      L
Sbjct: 4   ILVVDDEKPISD--IVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR+ V
Sbjct: 62  DVAREIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121

Query: 122 S------NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +      N + E   G +R+          G+   L  RE  +L YL  + G+ + +  +
Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNGKQLDLTHREFELLYYLAQHLGEVITRENL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
              ++G +D   +   V+  + +LR+K+ +       V ++R +GY
Sbjct: 182 LETVWG-YDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGY 226


>gi|26250928|ref|NP_756968.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           CFT073]
 gi|91213660|ref|YP_543646.1| DNA-binding transcriptional regulator BasR [Escherichia coli UTI89]
 gi|117626400|ref|YP_859723.1| DNA-binding transcriptional regulator BasR [Escherichia coli APEC
           O1]
 gi|170769529|ref|ZP_02903982.1| DNA-binding response regulator BasR [Escherichia albertii TW07627]
 gi|215489463|ref|YP_002331894.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218561202|ref|YP_002394115.1| DNA-binding transcriptional regulator BasR [Escherichia coli S88]
 gi|218692409|ref|YP_002400621.1| DNA-binding transcriptional regulator BasR [Escherichia coli ED1a]
 gi|227886849|ref|ZP_04004654.1| DNA-binding transcriptional regulator BasR [Escherichia coli 83972]
 gi|237703701|ref|ZP_04534182.1| transcriptional regulatory protein basR/PmrA [Escherichia sp.
           3_2_53FAA]
 gi|300988429|ref|ZP_07178667.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301047669|ref|ZP_07194731.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|306815753|ref|ZP_07449902.1| DNA-binding transcriptional regulator BasR [Escherichia coli NC101]
 gi|312965731|ref|ZP_07779960.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           2362-75]
 gi|331660690|ref|ZP_08361622.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA206]
 gi|26111360|gb|AAN83542.1|AE016771_53 Transcriptional Regulatory protein basR/pmrA [Escherichia coli
           CFT073]
 gi|56540613|gb|AAV92760.1| PmrA [Escherichia coli]
 gi|56540615|gb|AAV92761.1| PmrA [Escherichia coli]
 gi|56540617|gb|AAV92762.1| PmrA [Escherichia coli]
 gi|56540619|gb|AAV92763.1| PmrA [Escherichia coli]
 gi|56540621|gb|AAV92764.1| PmrA [Escherichia coli]
 gi|56540623|gb|AAV92765.1| PmrA [Escherichia coli]
 gi|56540625|gb|AAV92766.1| PmrA [Escherichia coli]
 gi|56540627|gb|AAV92767.1| PmrA [Escherichia coli]
 gi|56540629|gb|AAV92768.1| PmrA [Escherichia coli]
 gi|56540631|gb|AAV92769.1| PmrA [Escherichia coli]
 gi|56540633|gb|AAV92770.1| PmrA [Escherichia coli]
 gi|56540635|gb|AAV92771.1| PmrA [Escherichia coli]
 gi|56540637|gb|AAV92772.1| PmrA [Escherichia coli]
 gi|91075234|gb|ABE10115.1| transcriptional regulatory protein basR/PmrA [Escherichia coli
           UTI89]
 gi|115515524|gb|ABJ03599.1| BasR, DNA-binding response regulator in two-component regulatory
           system with BasS [Escherichia coli APEC O1]
 gi|170121586|gb|EDS90517.1| DNA-binding response regulator BasR [Escherichia albertii TW07627]
 gi|215267535|emb|CAS11989.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli O127:H6 str. E2348/69]
 gi|218367971|emb|CAR05771.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli S88]
 gi|218429973|emb|CAR10806.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli ED1a]
 gi|222035841|emb|CAP78586.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           LF82]
 gi|226901613|gb|EEH87872.1| transcriptional regulatory protein basR/PmrA [Escherichia sp.
           3_2_53FAA]
 gi|227836191|gb|EEJ46657.1| DNA-binding transcriptional regulator BasR [Escherichia coli 83972]
 gi|294491023|gb|ADE89779.1| DNA-binding response regulator BasR [Escherichia coli IHE3034]
 gi|300300415|gb|EFJ56800.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300407427|gb|EFJ90965.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|305851415|gb|EFM51870.1| DNA-binding transcriptional regulator BasR [Escherichia coli NC101]
 gi|307556283|gb|ADN49058.1| transcriptional regulatory protein [Escherichia coli ABU 83972]
 gi|307629184|gb|ADN73488.1| DNA-binding transcriptional regulator BasR [Escherichia coli UM146]
 gi|312289705|gb|EFR17596.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           2362-75]
 gi|312948707|gb|ADR29534.1| DNA-binding transcriptional regulator BasR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315287932|gb|EFU47334.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315293972|gb|EFU53324.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315296115|gb|EFU55424.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320193493|gb|EFW68130.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           WV_060327]
 gi|323190005|gb|EFZ75283.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           RN587/1]
 gi|323950321|gb|EGB46202.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323954400|gb|EGB50184.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|324008691|gb|EGB77910.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|331051732|gb|EGI23771.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA206]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E  QS      S +   L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ 
Sbjct: 119 -HNNQGESELNVGNLTLNMGRRQVWMSGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IY  +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219


>gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 231

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 17/197 (8%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L ++GY  +   DGV           + L+ + RE    I   ++        + RI+R 
Sbjct: 21  LEREGYTVVVASDGV-----------QGLEQARREPPDLIVLDIMLPRLDGFSVCRILRQ 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127
            S VP+I ++        +   + G DD ++KP    E LAR+ AI RR +     +E  
Sbjct: 70  ESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIMRRSERQPRTSERE 129

Query: 128 ---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               G +RV +  R      +   LP++E  +L  L+ NRG  +++  +   ++G  D  
Sbjct: 130 VLNAGALRVDTGSRRAWRDNQELTLPQKEFDLLTCLVRNRGIALSRDLLLERVWG-PDFI 188

Query: 185 VEENVVESHISKLRKKL 201
            +   V+ HI  LR+K+
Sbjct: 189 GDSRTVDVHIRWLREKI 205


>gi|292488012|ref|YP_003530889.1| response regulator phoP [Erwinia amylovora CFBP1430]
 gi|292899230|ref|YP_003538599.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291199078|emb|CBJ46189.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291553436|emb|CBA20481.1| Response regulator phoP [Erwinia amylovora CFBP1430]
 gi|312172136|emb|CBX80393.1| Response regulator phoP [Erwinia amylovora ATCC BAA-2158]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132
           P++ ++     Q  ++  ++G DD V KP H  E++AR+ A+ RR   +++      P +
Sbjct: 74  PILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMRRNCGLASQIITLQPFQ 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V    R+  +      L   E  I+E L+ N GK V+K  +   +Y    E  E + ++ 
Sbjct: 134 VDLSRRELTINDRQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLYP-DAELRESHTIDV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +LRKK++ +   + + + R  GY  D
Sbjct: 193 LMGRLRKKIQAEHAQEVITTVRGQGYRFD 221


>gi|196033103|ref|ZP_03100516.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195994532|gb|EDX58487.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 225

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQNETTFFQFKDLFVDASSNIVKKAGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223


>gi|148255692|ref|YP_001240277.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146407865|gb|ABQ36371.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 207

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  SQVP++ +S        +   + G DD V KP   RE++ARV  I RR+ 
Sbjct: 36  LEVCRRIRRTSQVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVNVILRRVA 95

Query: 121 VSNNRAETGPIRVFSDGR---DPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQ 172
            +       P  +   GR   DP+     F      L   E  IL  LM       ++ Q
Sbjct: 96  TAGAHRTVEPDELIH-GRLRLDPQQHLACFAETPLTLTALEFSILRTLMTRATVVFSREQ 154

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I +A Y L +  V +  ++SHI  +R KL +    D +++   +G+ +
Sbjct: 155 IMTAAYQL-NIQVSDRTIDSHIRNIRAKLASAGCEDAIETVHGVGFRL 201


>gi|197118248|ref|YP_002138675.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197087608|gb|ACH38879.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 226

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 95/202 (47%), Gaps = 11/202 (5%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYP 82
           ++L+G   LE  E +Q     D+  ++  L G  G  V +  +     + +P++ ++   
Sbjct: 30  IALDGAEGLEAVERVQP----DLILLDLMLPGMFGTDVCKTVKKSEKSAHIPVVMLTAKG 85

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRD 139
                +  F+ G DD V KP   RE++ RV A+ RR      + N    G IR+ ++  +
Sbjct: 86  EEIDKVVGFEVGADDYVIKPFSTRELMLRVKAVLRRKAPEPAATNIINVGGIRIDTERHE 145

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             V G+       E ++L  L+   G+  ++  +   ++G ++   +   V++HI++LR 
Sbjct: 146 VTVNGDEINFTTTEFKLLYTLVMRFGRVQSRDVLLRDVWG-YNFVEDTRTVDTHITRLRT 204

Query: 200 KLRNKLGFDPVDSKRFLGYSID 221
           K+ N    D + + R  GY ++
Sbjct: 205 KMGN--AGDMIKTVRGFGYKLE 224


>gi|148653890|ref|YP_001280983.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148572974|gb|ABQ95033.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 233

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 9/153 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR   S+  +   P
Sbjct: 77  SEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRR---SSALSGDKP 133

Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           I       DP  Q     G    +   E R+L + M++  +   +TQ+   ++G  +  V
Sbjct: 134 IEAEGLSLDPVSQRLSADGTPLEIGPTEYRLLAFFMSHPERAYTRTQLLDQVWG-GNVYV 192

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E+  ++ HI +LRK L      + + + R  GY
Sbjct: 193 EDRTIDVHIRRLRKVLEPYNYAEFIQTVRGTGY 225


>gi|209921602|ref|YP_002295686.1| DNA-binding transcriptional regulator BasR [Escherichia coli SE11]
 gi|256019757|ref|ZP_05433622.1| DNA-binding transcriptional regulator BasR [Shigella sp. D9]
 gi|331675637|ref|ZP_08376384.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA280]
 gi|332280893|ref|ZP_08393306.1| transcriptional regulatory protein [Shigella sp. D9]
 gi|56540601|gb|AAV92754.1| PmrA [Escherichia coli]
 gi|56540609|gb|AAV92758.1| PmrA [Escherichia coli]
 gi|56540611|gb|AAV92759.1| PmrA [Escherichia coli]
 gi|56540653|gb|AAV92780.1| PmrA [Escherichia coli]
 gi|209914861|dbj|BAG79935.1| two-component response regulator [Escherichia coli SE11]
 gi|284924201|emb|CBG37301.1| two-component response regulator [Escherichia coli 042]
 gi|324017155|gb|EGB86374.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|331067245|gb|EGI38653.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA280]
 gi|332103245|gb|EGJ06591.1| transcriptional regulatory protein [Shigella sp. D9]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E  QS      S +   L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ 
Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMSGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IY  +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219


>gi|86359177|ref|YP_471069.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86283279|gb|ABC92342.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 225

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 21/171 (12%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA  +Q  ++ ++   + +  +   D G DD + KP    E  ARV  + RR 
Sbjct: 60  LDVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRR- 118

Query: 120 KVSNNRAET---GPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +  R+ T   G I      R FS G  P        +P RE  +LE L    GK VAK
Sbjct: 119 -QAGLRSATVGFGGISFDLNSRTFSSGDTP------LDIPARELGLLEILFMRAGKVVAK 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I  ++   FD+ +  N +E ++S+LRK+L +  G   V + R +GY +D
Sbjct: 172 EAIIQSLTA-FDDDISANAIEQYVSRLRKRL-SPHGL-TVKTARGIGYYLD 219


>gi|327394622|dbj|BAK12044.1| transcriptional regulatory protein TctD [Pantoea ananatis AJ13355]
          Length = 223

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 85/161 (52%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R    VP++ ++   +L   +   ++G DD + KP    E+ AR+ A+ RR +  
Sbjct: 63  LTRLRRRGQTVPVLMLTARTTLDDRVRGLNTGADDYLTKPFELDELDARLRALLRRSQGQ 122

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + + +T G + +  +G     +  +   P RE  +L  LM  +G+ V++  ++   + L 
Sbjct: 123 SPQNQTLGQLVLNGEGYFLLAEKPLALTP-RESSVLTTLMQRQGRPVSRQHLYEQTFTLA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           DEA  E+ +E ++ ++RKKL    G D  + + R LGYS++
Sbjct: 182 DEASPES-IELYVHRVRKKLA---GSDVGIVTLRGLGYSLE 218


>gi|313885716|ref|ZP_07819465.1| subtilin biosynthesis regulatory protein SpaR [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619081|gb|EFR30521.1| subtilin biosynthesis regulatory protein SpaR [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 219

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA    P++ ++     +  ++    G DD + KP    E+LAR+ A  RR K   + +
Sbjct: 66  IRAKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGASELLARIEAHLRREKRERHTS 125

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G IR      +  V  E   L + E +I E L   +G+  ++ QI+  I+G FD   
Sbjct: 126 LNLGEIRFDLSSNEVFVGDEKVHLTKSEYQISELLAKRKGQVFSREQIYELIFG-FDGIR 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + + +  HI  +R K + K   +P+++   +GY   WN
Sbjct: 185 DASAISEHIKNIRAKFQ-KYYENPIETVWGIGYK--WN 219


>gi|291534769|emb|CBL07881.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R +R +    +I ++        +  +++G DD + KP     +L ++ A +RR  
Sbjct: 61  LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++
Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            L  + V+EN +  +I +LR+K+ +     PV  K   G    WN
Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224


>gi|238759013|ref|ZP_04620184.1| Transcriptional regulatory protein tctD [Yersinia aldovae ATCC
           35236]
 gi|238702824|gb|EEP95370.1| Transcriptional regulatory protein tctD [Yersinia aldovae ATCC
           35236]
          Length = 221

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 7/162 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+ +    +P++ ++    +   +   + G DD + KP    E+ AR+ A+ RR +  
Sbjct: 60  LARLRKRGQTLPVLLLTARTEVADRVKGLNQGADDYLTKPFELDELEARIRALLRRSIGE 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    + G +    +G    +  +   L  RE  +L  L+  RG+ VAK Q+F  I+ L 
Sbjct: 120 TTQTIQFGDLTYHDEGYFL-LSNKPLALTPRESAVLTSLIHRRGRPVAKQQLFEQIFTLA 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSIDW 222
           DEA  E+ +E ++ ++RKKL    G + V  + R LGYS++ 
Sbjct: 179 DEANPES-IELYVHRVRKKL---YGSNVVIQTLRGLGYSLEC 216


>gi|228942881|ref|ZP_04105397.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975902|ref|ZP_04136430.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783828|gb|EEM31879.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816804|gb|EEM62913.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 223

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+  ++   S    L   + G DD + KP +   +LARV  I RR   +
Sbjct: 63  ICREIRKTSDVPIFMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +   I ++ D            Q +   L + E +IL  L+ NRG  V +  +   
Sbjct: 120 SGDFKMNHILIYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++   D  V+++ +  +I++LRKKL      +P+ ++R LGY
Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLEEIGIENPIATRRSLGY 220


>gi|229816438|ref|ZP_04446739.1| hypothetical protein COLINT_03491 [Collinsella intestinalis DSM
           13280]
 gi|229807980|gb|EEP43781.1| hypothetical protein COLINT_03491 [Collinsella intestinalis DSM
           13280]
          Length = 237

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 12/205 (5%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---HSQVPLIGIS 79
           G+  EGF+     E+  + AR    A+   ++      LE+ R +RA    + VP++ ++
Sbjct: 23  GIEAEGFSC--DSEFKAAVARRVPDAVLLDIMLPDTDGLEIMRRLRADQATATVPIMMLT 80

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFS 135
              S    +   D G DD + KP    E+ +R  A+ RR  + +  A      G I +  
Sbjct: 81  AKDSELDKVVALDGGADDYLAKPFSLMELTSRCRALLRRGGMMSRPAPEMLSVGGIELSP 140

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
             R+  V G    L  RE  +LEYLM   G    +  +  +++G +D       V+ H+ 
Sbjct: 141 SHREVRVDGRELKLTLREFDLLEYLMRKPGVVFTRESLLQSVWG-WDFDGGSRTVDVHVQ 199

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220
            LR+KL +    D +++ R +GY +
Sbjct: 200 TLRQKLGSH--ADRIETVRGVGYRL 222


>gi|196232874|ref|ZP_03131724.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196223073|gb|EDY17593.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 217

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 6/126 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRR 152
           G DD + KP    E+LARV A+ RR     + +        +       +GE +  L  R
Sbjct: 94  GADDYLVKPFALEELLARVHALCRRTYGGKSTSICVAGLELNTSSKTVKRGEHIVDLLPR 153

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E R+LEYL A  G+ V +T+I + IY      +  NVV+S I  LRKK+ N    + + +
Sbjct: 154 EYRLLEYLAARTGQVVTRTEIETHIYDDLATPM-SNVVDSAICALRKKIGN----ERIRT 208

Query: 213 KRFLGY 218
           +R LGY
Sbjct: 209 RRGLGY 214


>gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 226

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 18  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 67  RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + R +GY +
Sbjct: 185 TNTVDVAIRRLRAKVDDPFENKLIMTVRGMGYRL 218


>gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes]
 gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes]
 gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139
           G DD + KP   RE++AR+ AI RR   +  +AE               G +++  D  +
Sbjct: 92  GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEATILIGDLKILPDSYE 148

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             +Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR 
Sbjct: 149 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 207

Query: 200 KL 201
           K+
Sbjct: 208 KI 209


>gi|260684572|ref|YP_003215857.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260688230|ref|YP_003219364.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|260210735|emb|CBA65606.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260214247|emb|CBE06540.1| two-component system response regulator [Clostridium difficile
           R20291]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S VPLI +S   S    +   ++G DD + KP     ++ ++  I RR+    N +
Sbjct: 72  IRAISNVPLIFLSSRDSDMDLIMGINNGADDYITKPFSIDILVTKINGIIRRVY---NYS 128

Query: 127 ETGPI-----RVFSDGR---DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  I      +F  G+     + + +   L + E +IL  L+ N+ + V++  +   ++
Sbjct: 129 DSNSILYCEDLMFDVGKGIIKHKYKDKSIELTKNEIKILTLLLKNKNRVVSRESLMMTLW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              DE V +N +  ++++LR K++ +LGFD  + +K+ +GY I
Sbjct: 189 D-NDEFVTDNALTVNMNRLRSKVK-ELGFDDFIKTKKGIGYII 229


>gi|313884093|ref|ZP_07817859.1| response regulator ArlR [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620540|gb|EFR31963.1| response regulator ArlR [Eremococcus coleocola ACS-139-V-Col8]
          Length = 232

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 19/202 (9%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           D  L  +GY      DG S  G  +   EEW       DV  ++  L       LE+ R 
Sbjct: 22  DLELQHEGYETDIRHDGRS--GLEAALDEEW-------DVILLDLMLPELNG--LEVCRR 70

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120
           IR     P+I ++   S+   +   D G DD + KP    E+LAR+ A++RR      L+
Sbjct: 71  IRPIKDTPIIIMTARDSVIDRVSGLDQGADDYIVKPFAIEELLARLRALFRRIDHEEELR 130

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V++    E   + V    R  +    V  L +RE  +L +LM N    +++  +   ++G
Sbjct: 131 VTHQPTVEYRDLVVEKANRIVKRGDTVIDLTKREYELLLFLMENINMVMSRDTLLDKVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +   VE NVV+ +I  LR K+
Sbjct: 191 -YKSEVETNVVDVYIRYLRNKI 211


>gi|295100813|emb|CBK98358.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGK-GE 58
           M  +++D + +++        +G    GF S E F + + ++  E V  ++  L G+ G 
Sbjct: 1   MIYIVEDDSAIRELEQYALQSNGYEAVGFESSEPFWQAVHTTPPELV-ILDVMLPGEDGF 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +L+  R   +  ++P+I I+   S   T+   D G DD + KP    E L+RV A  RR
Sbjct: 60  SILKKLRAAPSLRRLPIIMITAKSSELDTVRGLDCGADDYITKPFGIMEFLSRVRAALRR 119

Query: 119 LKVSNNRAETGPIR--VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +    R      R  +  + R    V G    L  +E  +L  L+ N    V +  I  
Sbjct: 120 AE-PEARPNVYSFREILLDNARHSVTVSGAPVELTYKEYSLLRLLLENTNLVVTRETILQ 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D +VE   V+ HI  LRKKL +   +  + + R +GY +
Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAGKY--ICTVRKVGYKL 220


>gi|270290423|ref|ZP_06196648.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
 gi|270281204|gb|EFA27037.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
          Length = 228

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 8/171 (4%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+++  ED  AI   L+      +E+ R IR     P+I ++   S+   +   D G DD
Sbjct: 38  LEAALSEDFDAILLDLMLPEINGIEVCRRIRREKITPIIMMTARDSIIDRVSGLDHGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            + KP    E+LAR+ A+ R++ +            E   I +  + R  +   EV  L 
Sbjct: 98  YIVKPFAIEELLARLRAVLRQVDLEEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLT 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +RE  +L  LM N     ++  + S ++GL D  VE NVV+ +I  LR K+
Sbjct: 158 KREYELLLLLMENVNVVQSRETLLSKVWGLED-GVETNVVDVYIRYLRNKI 207


>gi|226323497|ref|ZP_03799015.1| hypothetical protein COPCOM_01272 [Coprococcus comes ATCC 27758]
 gi|225208181|gb|EEG90535.1| hypothetical protein COPCOM_01272 [Coprococcus comes ATCC 27758]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R +R +    +I ++        +  +++G DD + KP     +L ++ A +RR  
Sbjct: 61  LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++
Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            L  + V+EN +  +I +LR+K+ +     PV  K   G    WN
Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224


>gi|152970615|ref|YP_001335724.1| response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150955464|gb|ABR77494.1| putative response regulator consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 245

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 13/164 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  + VP+I ++        L     G DD V KP +  E++ARV A+ RR +      
Sbjct: 81  LRKETNVPVIMVTALDQDVDKLMGLRLGADDYVIKPFNPSEVIARVEAVLRRTRPVAEST 140

Query: 127 ETGPIR-----VFSDGRDPEV--QGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + P+R     ++ D    E+  QGEV    L   E ++L YL  N  K  ++ ++  A 
Sbjct: 141 HSRPLRTPFLTIYPDEFYVEITAQGEVSTPVLTTTEFKLLTYLARNPRKVCSREELLDAC 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
               D    +  V+SH+SKLRKKL +  G   + +S R LGY +
Sbjct: 201 LPEGDSL--DRTVDSHMSKLRKKLEHA-GLKGIPESIRGLGYRL 241


>gi|126641798|ref|YP_001084782.1| AdeR [Acinetobacter baumannii ATCC 17978]
          Length = 211

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR + +N   
Sbjct: 42  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 101

Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 102 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 159

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 160 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 202


>gi|26989432|ref|NP_744857.1| DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|24984298|gb|AAN68321.1|AE016466_6 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 220

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 15/167 (8%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL R +RA    +P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             S  RA+   I       DP  Q     G    L  +E  +L  L+A  GK   + ++ 
Sbjct: 119 --SVGRAKV-LIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLT 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +YG +DE  E N +E +I  LRKKL N L    + + R +GY ++
Sbjct: 176 QLLYG-WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217


>gi|329960930|ref|ZP_08299209.1| response regulator receiver domain protein [Bacteroides fluxus YIT
           12057]
 gi|328532216|gb|EGF59020.1| response regulator receiver domain protein [Bacteroides fluxus YIT
           12057]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  L +  +  + VP+I I+   +   T+  F+ G DD ++KP   RE+  RV A+ 
Sbjct: 61  GFKMASLLKKDKKTAHVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAVRVKAVL 120

Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR + +    E  P ++           +   + GE   L ++E  IL  L+ N+G+  +
Sbjct: 121 RRTQQAE--TERAPEQITYKSLVLDIIKKKVSIDGEEASLTKKEFEILLLLLQNKGRVFS 178

Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           +  I   I+   DE  V +  ++ +I++LRKK+
Sbjct: 179 REDILGRIWS--DEVYVLDRTIDVNITRLRKKI 209


>gi|319934959|ref|ZP_08009404.1| winged helix family Two component transcriptional regulator
           [Coprobacillus sp. 29_1]
 gi|319810336|gb|EFW06698.1| winged helix family Two component transcriptional regulator
           [Coprobacillus sp. 29_1]
          Length = 225

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 12/161 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS        +   + G DD +NKP     + A++ AI RR   + + +
Sbjct: 67  IRKVSEVPIIFISSTNENMNIVMAMNMGADDFINKPFDLNVLTAKIQAILRR---TYSFS 123

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +   I  + D            Q ++  L + E +I++ L       V++  +  A++  
Sbjct: 124 KQFHILTYKDLVLNILEATISYQIQIIELTKNELKIMQMLFEKSETFVSRDDLMIALWQ- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            D+ V++N +  ++++LRKKL +  GFD  + +K+ LGY +
Sbjct: 183 SDQFVDDNTLSVNMNRLRKKL-DDFGFDSLIQTKKGLGYKL 222


>gi|218133400|ref|ZP_03462204.1| hypothetical protein BACPEC_01265 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992273|gb|EEC58277.1| hypothetical protein BACPEC_01265 [Bacteroides pectinophilus ATCC
           43243]
 gi|291520917|emb|CBK79210.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
 gi|291539317|emb|CBL12428.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
 gi|291549703|emb|CBL25965.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R +R +    +I ++        +  +++G DD + KP     +L ++ A +RR  
Sbjct: 61  LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++
Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            L  + V+EN +  +I +LR+K+ +     PV  K   G    WN
Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224


>gi|163816668|ref|ZP_02208031.1| hypothetical protein COPEUT_02858 [Coprococcus eutactus ATCC 27759]
 gi|158447925|gb|EDP24920.1| hypothetical protein COPEUT_02858 [Coprococcus eutactus ATCC 27759]
          Length = 253

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 3/138 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R +S VP++ ++   S +  +  +D G DD + KP     + A+  A+ +R K +
Sbjct: 94  VCREMRRNSMVPILFLTARDSERDIMLGYDLGCDDYIVKPFSLATLYAKCKALIKRSKGT 153

Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++  E   G I +       +V G    L  +E  IL+ L+ N+GK + + ++   I+G 
Sbjct: 154 DSNGELVCGAISMNPSRYMTKVNGVEVDLAPKEFAILKILLENKGKVITRERLLVDIWG- 212

Query: 181 FDEAVEENVVESHISKLR 198
           +D    +  V++H+ KLR
Sbjct: 213 YDYEGSDRCVDNHVRKLR 230


>gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
 gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 11/159 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR +S VP+I ++        +   D G DD + KP +  E+ AR+ AI RR+ 
Sbjct: 62  FEVCQQIREYSDVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRVS 121

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +   E       G +++  + R   +  +   L  +E  +LE L  N GK  ++  + 
Sbjct: 122 KRDKNQENEKVIVKGEMKIDCESRRVIIGEKEINLTAKEFDLLELLAMNPGKVYSRENLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           + ++G ++   +   V+ HI +LR+K+      +P D K
Sbjct: 182 NIVWG-YEYPGDARTVDVHIRRLREKIET----NPSDPK 215


>gi|125973909|ref|YP_001037819.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714134|gb|ABN52626.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 236

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 8/131 (6%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           G DD ++KP   RE +ARV   +RR     + S  R   G I +  + R+     ++  +
Sbjct: 99  GADDYISKPFSVREFVARVKVAFRRQADSFENSPKRVNVGRITIDFERREVYKDNQIIEM 158

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  +L+ L+ NRGK +++  +   I+G FD   E   V+ HI  LR+K+ +    +P
Sbjct: 159 TFKEFELLKLLIMNRGKVLSRDMLLQKIWG-FDFFGETRTVDVHIRYLRQKIEDDDN-NP 216

Query: 210 V--DSKRFLGY 218
           V  ++ R +GY
Sbjct: 217 VYIETVRCIGY 227


>gi|50120277|ref|YP_049444.1| DNA-binding transcriptional activator KdpE [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610803|emb|CAG74248.1| two-component response regulator of kdp operon [Pectobacterium
           atrosepticum SCRI1043]
          Length = 226

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 16/159 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I +S     Q  +   D+G DD + KP    E+LAR+    RR   SN 
Sbjct: 66  RDLRQWSSLPVIVLSARTDEQDKIGALDAGADDYLTKPFGIGELLARLRVALRR--HSNT 123

Query: 125 RAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ET     G I V    R     G+   L   E R+L  L+AN GK + + Q+ + ++G
Sbjct: 124 QQETPLVSFGTITVDLLNRQVNRDGQELHLTPIEFRLLATLLANPGKVLTQRQLLTQVWG 183

Query: 180 LFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216
                   N VE SH  ++    LR KL  DP   +  L
Sbjct: 184 -------PNAVEHSHYLRIYMGHLRQKLESDPARPRHLL 215


>gi|326330532|ref|ZP_08196840.1| DNA-binding response regulator PrrA [Nocardioidaceae bacterium
           Broad-1]
 gi|325951807|gb|EGD43839.1| DNA-binding response regulator PrrA [Nocardioidaceae bacterium
           Broad-1]
          Length = 221

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 18/213 (8%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE----LPRIIRAHS 71
           IA F   G+S +G  +    + L+        A +  ++  G   ++    L ++    S
Sbjct: 13  IAAFLAKGLSADGHQTTTVADGLEGLEEALSGAFDLMVLDIGLPTIDGFEVLDQLRAQGS 72

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           ++P++ ++   S+  T+   + G DD + KP    E+ AR+    R  +  N  AE G +
Sbjct: 73  RMPVVVLTARDSVHDTVSALEGGADDYLAKPFRFAELRARINVRLR--QQDNTDAEVGEL 130

Query: 132 RVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           R  S   D       V G    L  RE  + E L+ + G+ +++ Q+    +G+ FD   
Sbjct: 131 RSGSVALDLRTRRLRVDGRETDLSAREFALAEVLLRHPGQVLSRAQLLDLAWGMDFDPG- 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             NVV+ ++  LRK    KLG   V++ R +GY
Sbjct: 190 -SNVVDVYVGYLRK----KLGSARVETVRGMGY 217


>gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 248

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 40  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 88

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 89  RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 148

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 149 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 206

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + R +GY +
Sbjct: 207 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|302334242|gb|ADL24435.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 221

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I IS        +     G DD + KP +    +A++ A+ RR   L V+N
Sbjct: 66  IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +        +  D      Q +   L   E +IL+ L  N  K V++T +    +   + 
Sbjct: 126 DSMTVKGCTLILDEAKVVYQEQSIQLSLTELQILKLLFQNEDKYVSRTALIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +++N +  ++++LRKKL N +G  D + +K+ +GY +
Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221


>gi|167950592|ref|ZP_02537666.1| two-component system regulatory protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 258

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           +A    P++ ++   + Q  ++  ++G DD + KP H  E+LAR+ A+ RR    S    
Sbjct: 68  QAGKHFPILILTARGNWQDKVEGLEAGADDYLVKPFHVEELLARLNALLRRAAGWSQPLI 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           E GPI + +  +   +Q +   L   E ++LEY+M + G+ V+K+++   IY   D   +
Sbjct: 128 ECGPIELNTRSQTVCLQQQPIDLTAYEYKVLEYMMLHAGQVVSKSELTEHIYDQ-DWDRD 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKR 214
            NV+E  + +LRKKL     + P+++ R
Sbjct: 187 SNVIEVFVRRLRKKLDPDARYKPIETLR 214


>gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
 gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
          Length = 238

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 12/186 (6%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAF---LIGKGEKVLELPRIIRAHSQ-VPLIGISDYP 82
           EG+  +   +  Q+ AR +    +A    L+  G   LE+ R IR  ++ +P+I IS   
Sbjct: 25  EGYQIVHEADGGQALARLETQVWDAVILDLMLPGVDGLEICRRIRQMTRYLPVIIISART 84

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFS 135
           S    +   + G DD + KP    E++ARV A++RR       L +   R     + +  
Sbjct: 85  SEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQEAMGQNLLMDAGRLSCHGLSIDP 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
             R+ +++GE   L  RE  +L Y   + G+  ++  +   ++G   E   E+ V +HI+
Sbjct: 145 LSREVKLRGETVDLTPREFDLLYYFARHPGEVFSRLALLEQVWGYQHEGY-EHTVNTHIN 203

Query: 196 KLRKKL 201
           +LR K+
Sbjct: 204 RLRSKI 209


>gi|138894462|ref|YP_001124915.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265975|gb|ABO66170.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
          Length = 226

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 80/161 (49%), Gaps = 2/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F  G DD + KP    E++ARV A+ +R ++
Sbjct: 64  ELCRELRDYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 123

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++  + G + +     +  +     PLP +E  +L  L +  GK   + ++   I+G 
Sbjct: 124 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 183 YDYEGDERTVDVHIKRLRERFAQPNVPFFIRTIRGLGYRLE 223


>gi|260682519|ref|YP_003213804.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686118|ref|YP_003217251.1| two-component response regulator [Clostridium difficile R20291]
 gi|260208682|emb|CBA61470.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212134|emb|CBE02769.1| two-component response regulator [Clostridium difficile R20291]
          Length = 238

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 17/177 (9%)

Query: 42  AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           +++D   +   ++  G    E    IR +S +P++ ++      + +    +G DD + K
Sbjct: 50  SKQDYQLVVLDVMMPGMDGFETMEQIRKYSSIPILMLTSKSDNYSKVHGLRAGADDYLTK 109

Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERR 155
           P    E  ARV ++ RR    N + E      F       D       GE   LP +E  
Sbjct: 110 PFEITEFTARVLSLIRRYTRFNPKNEEPQQLSFKGLLIDLDQHTVTTNGEPMLLPPKEFG 169

Query: 156 ILEYLMANRGKRVAKTQIFSAIYG---LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +L Y   ++GK + K QI+ A++G   ++D        +S+I  +  +LR K+  DP
Sbjct: 170 VLLYCARHQGKILTKQQIYEAVWGEPYVYD--------DSNIMAIISRLRKKIELDP 218


>gi|91789821|ref|YP_550773.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91699046|gb|ABE45875.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 230

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++  G      D G +++   S E  E +      D + I+  L       L
Sbjct: 3   LLLVEDDVMLASGIKLGLSDAGYAVDWVGSAERAEEVLQGETFDAAIIDIGL--PRLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R     +P++ ++   +LQ  +   D G DD + KP    E+LAR+ A+ RR +
Sbjct: 61  ELTRRLRRGGLAMPVLILTARDALQDRVQGLDIGADDYMVKPFELPELLARLRALLRRSQ 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   + G + + +  R     G++  L  RE  ++EYL+ N  K  +K ++  A+ G
Sbjct: 121 AATSATLSFGALELDTANRQAHANGQLIELGPREWTVMEYLLINAPKPASKDKLLQALTG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D+ +  N +E +IS+LR KL    G   V S R  GY ++
Sbjct: 181 -WDKEITPNAIEVYISRLRGKLEPH-GI-AVRSIRGFGYRLE 219


>gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 222

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-F 147
           D FD G DD + KP   R ++AR+ A+ RR         T         R    +G    
Sbjct: 89  DAFDLGADDYLTKPFSFRVLVARLRALVRRGAPERPVVLTAGSLSLDPARHTVQRGSTPI 148

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L  RE  +LE+LM N+   V K  I + ++        +NVVE ++  LR+K+    G 
Sbjct: 149 ALTPREYGVLEFLMRNKDVVVTKADILANVWDAHHHG-PDNVVEVYVGYLRRKIDVPFGT 207

Query: 208 DPVDSKRFLGYSI 220
           + +++ R +GY +
Sbjct: 208 NTIETIRGVGYRL 220


>gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 228

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 18/158 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR     P+I ++        +   + G DD + KP   +E++ARV A+ RR  
Sbjct: 65  IDVLKWIRKADNTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRRAN 124

Query: 121 VSNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             N  ++           G   V  + +D         +P +E  +L YL  N+ K   +
Sbjct: 125 SENVSSQVLNFNGLKIDMGSYTVIYNEKD-------IKMPPKEFELLYYLANNKNKVFTR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            Q+   ++G +D   +   V+ H+ +LR+KL    G+D
Sbjct: 178 EQLLCEVWG-YDYPGDSRTVDVHVKRLREKLHEGNGWD 214


>gi|86147918|ref|ZP_01066223.1| transcriptional regulator CpxR [Vibrio sp. MED222]
 gi|218710833|ref|YP_002418454.1| transcriptional regulator CpxR [Vibrio splendidus LGP32]
 gi|85834345|gb|EAQ52498.1| transcriptional regulator CpxR [Vibrio sp. MED222]
 gi|218323852|emb|CAV20213.1| Transcriptional regulatory protein cpxR [Vibrio splendidus LGP32]
          Length = 229

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 27/206 (13%)

Query: 18  LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE--LPRI------- 66
           L  DD   L G   + L FE +  S A +  + +EA        +L+  +PR+       
Sbjct: 5   LLIDDDTELTGLLKDILSFEGFTVSEANDGYAGLEAINDEIDLILLDVMMPRLNGMETLK 64

Query: 67  -IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------ 119
            +R + + P++ ++        +   + G DD + KP   RE+LAR+ AI RR       
Sbjct: 65  KLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQINTAP 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K ++++ +   I VF   ++    G++  L   E  +L +L+ N G+ + K  +   + G
Sbjct: 125 KAASDKIQYQDIEVFPGKQEAYCNGQLIDLTTTEFALLSHLIQNPGQVITKEALSLDVLG 184

Query: 180 ----LFDEAVEENVVESHISKLRKKL 201
                FD A     ++ HIS LRKK+
Sbjct: 185 KRLAAFDRA-----IDMHISNLRKKI 205


>gi|226945181|ref|YP_002800254.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226720108|gb|ACO79279.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 249

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 16/171 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR+HSQ+P++ ++        +   D G DD V KP    E++AR+ AI RR  
Sbjct: 81  IEVLRRIRSHSQIPVLLLTARGDNIDRIAGLDLGADDYVPKPSSPGELVARLRAILRRTG 140

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V      + +    G + ++   R  E QG    L   E ++LE L  + G+ V+K  + 
Sbjct: 141 VQAQPEQAADAVRAGALTLWPARRKAEWQGAPLELTGTEFQLLEELARHVGQLVSKQDLS 200

Query: 175 SAIYG----LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G     FD       ++ HIS +R+KL  +   +P + S R  GY +
Sbjct: 201 INALGRPLTRFDRR-----IDVHISSIRQKLGQRGDGEPWIQSVRGQGYQL 246


>gi|295108584|emb|CBL22537.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R +R +    +I ++        +  +++G DD + KP     +L ++ A +RR  
Sbjct: 61  LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++
Sbjct: 121 EKTEAGKMISGGIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            L  + V+EN +  +I +LR+K+ +     PV  K   G    WN
Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224


>gi|228936548|ref|ZP_04099344.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948983|ref|ZP_04111256.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810739|gb|EEM57087.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823136|gb|EEM68972.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 206

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 43  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 102

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 103 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 162

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 163 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 205


>gi|297202432|ref|ZP_06919829.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197710046|gb|EDY54080.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 219

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 22/163 (13%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------- 118
           A  +VP++ ++         +  D+G DD + KP  +  ++AR+ A+ RR          
Sbjct: 66  AGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGNGAGASPV 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L++   R +T   RVF DG +         L  +E  +LE L    G+ V+K QI   ++
Sbjct: 126 LELGELRIDTAAHRVFLDGSE-------VTLTAKEFSVLEQLALRAGEVVSKAQILEHVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F    + N+VE ++S LR+KL   L    + + R  GY ++
Sbjct: 179 D-FAYDGDPNIVEVYVSTLRRKLDAGL----IRTVRGAGYRLE 216


>gi|72161734|ref|YP_289391.1| response regulator receiver [Thermobifida fusca YX]
 gi|71915466|gb|AAZ55368.1| response regulator receiver [Thermobifida fusca YX]
          Length = 219

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 14/163 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+    S++P+I ++   S++ T+   ++G DD + KP    E+LAR   I  R++ +
Sbjct: 64  LRRLREEGSRLPIIILTARDSVRDTVTGLETGADDYMTKPFRFEELLAR---IRLRMRSA 120

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +N AET  +       D   +    P     L  RE  +LE  + + G+ +++ QI S +
Sbjct: 121 HN-AETTVLHAGDLALDLRTRRASTPEATVDLTAREFALLELFLRHPGQVLSRQQILSHV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D     NVV+  I  LRK    K+G   +++ R +GY +
Sbjct: 180 WG-YDYDPGSNVVDVFIRALRK----KIGAHRIETLRGMGYRL 217


>gi|116620224|ref|YP_822380.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223386|gb|ABJ82095.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 231

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 10/137 (7%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQ--G 144
             SG DD + KP    E+LAR+ A+ RR  V    +    + G I V  D R  EV   G
Sbjct: 93  LKSGADDYLTKPFEMMELLARIEALLRRAPVRRSLNAGTFQLGGIAV--DFRRAEVTRAG 150

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +   L  RE R+L YL+ + G+ V +  + + ++G +    +   V+ H++ LR+KL   
Sbjct: 151 KPVTLSAREYRLLGYLIDHCGETVTREDLLTQVWG-YSATTDTRTVDVHVAWLRQKLEEN 209

Query: 205 LGFDP-VDSKRFLGYSI 220
             +   + + R LGY +
Sbjct: 210 PKYPRYLQTVRGLGYKL 226


>gi|327190838|gb|EGE57903.1| two component winged helix family transcriptional regulator
           [Rhizobium etli CNPAF512]
          Length = 228

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 15/170 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  SQVP++ ++        +   + G DD V KP    E+ AR+ AI RR  
Sbjct: 61  IEVLQRIRKLSQVPVLMLTARGDDVDRISGLNLGADDYVPKPCSPGELAARLRAILRRAG 120

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS +    G + + S  R  E +GE   L   E  +LE L  + G+ V+K +I  
Sbjct: 121 QPAAGVSTDTIRAGQLVIHSGSRSAEWRGEALELTGTEFSLLEVLARSAGQLVSKQEISK 180

Query: 176 AIYGL----FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +G     FD       ++ HIS +R+KL   + G   + S R  GY +
Sbjct: 181 RAFGKPLTPFDRR-----IDVHISSVRQKLGLREDGQSWIQSVRGQGYQL 225


>gi|295705558|ref|YP_003598633.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294803217|gb|ADF40283.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 225

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 5/143 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +IR     P+I +S   + Q  +     G DD + KP   +E+ AR+ A  RR +  
Sbjct: 63  LCELIRKSISCPIIFLSAKQTEQDRVKGLLVGGDDYLVKPFSMKELKARIYAHLRREQRI 122

Query: 123 N----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N    NR   G + +  +G       E  P   RE  I+ +L  + G+   + Q++  ++
Sbjct: 123 NSNSYNRLHFGELTIDLNGYQILHNNEAIPFTSREFEIVHFLALHPGQVFTREQLYEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D   + + +  H+ K+R KL
Sbjct: 183 G-YDAEGDSSTITEHVKKIRAKL 204


>gi|282801738|gb|ADB02841.1| AzicR3 [Kibdelosporangium sp. MJ126-NF4]
          Length = 229

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 14/153 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  +  P+I  +D  +    +    +G DD ++KP   RE+LAR+ A+ RRL+
Sbjct: 60  LEVCRQIRRLNDTPMIAFTDGGAKLERVLVLQAGSDDCMDKPYEFRELLARIEALMRRLR 119

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G + + +  R+  + G    L R+E  +L YL  N G  V + ++ 
Sbjct: 120 PRQRTRAVELSLSIGALEIDATAREARLDGRHVELTRKEFELLYYLARNAGTVVTRQRLM 179

Query: 175 SAIYGLFDEAVE------ENVVESHISKLRKKL 201
           + ++G  D+            +++H+  LR KL
Sbjct: 180 AEVWG--DQTPHAASVRASRTIDTHVGSLRSKL 210


>gi|326318962|ref|YP_004236634.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375798|gb|ADX48067.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 236

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 12/148 (8%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA S  VP++ I+   + Q  ++    G DD + KP+   E +AR  A+ RR 
Sbjct: 60  LEVIRTVRAASDTVPILFITRRNAEQDLVEALACGADDFMTKPLRMGEFMARCNALLRR- 118

Query: 120 KVSNNRAETGPIRVFSDGR-DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +  +A  G + VF   R DPE     V G    L  +E  +  ++  N G+ +++  +
Sbjct: 119 --AYPQAAAGTL-VFGRYRFDPEQRSLRVDGAPVELKNKEYELALFMFQNAGRLLSREHL 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
             A++G   +A   + +++H+S+LR KL
Sbjct: 176 REAVWGDIHDAPSRS-LDTHVSRLRAKL 202


>gi|260774096|ref|ZP_05883011.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260611057|gb|EEX36261.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 225

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 15/136 (11%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG----RDPEVQ----G 144
           +G DD + KP H  E+LAR+ A+ RR       +E+ P+            P +Q     
Sbjct: 93  TGADDYLAKPFHFEELLARLDALQRR------HSESSPLPTLQVADLVLCLPTMQVTRDN 146

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           ++  L  +E  ILE LM   G   ++ +I + ++G+  + +  NVV+ ++ +LRKK+ + 
Sbjct: 147 QLIELTAKELSILELLMNKPGHIFSRERILANVWGMHQDPL-TNVVDVYMRRLRKKIDDP 205

Query: 205 LGFDPVDSKRFLGYSI 220
                + +KR +GY +
Sbjct: 206 FTAPLLKTKRGMGYYL 221


>gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 229

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 13/192 (6%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           E+ L+++ + D       ++  G    EL R +R+ +  P++ +S   +    +   + G
Sbjct: 39  EDALEAAKKTDYDLFILDIMLPGMDGYELCRRLRSFTSAPVLFLSARDTELDKVVGLEIG 98

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS----DGRDPEVQGEVFP-- 148
            DD ++KP   RE++ARV A+ RR    + + ETG     S    D       G+  P  
Sbjct: 99  GDDYLSKPFGLRELIARVRALLRR---GSGQMETGHAITASGITLDEDAHTATGDSGPID 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L  RE  ++  LM + G  V++  +    +G ++   E   V++HI +LR K+    G+D
Sbjct: 156 LTPREFELMAALMKHAGNVVSREDLLRDAWG-WEYLTETKTVDTHIKRLRDKI-AAAGYD 213

Query: 209 P--VDSKRFLGY 218
           P  V++ R  GY
Sbjct: 214 PSVVETVRGYGY 225


>gi|227500147|ref|ZP_03930217.1| response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227217764|gb|EEI83066.1| response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 219

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR     P++ ++     +  ++    G DD + KP    E+LARV A  RR K   + +
Sbjct: 66  IRNKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGAAELLARVEAHLRREKRERHTS 125

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G IR      +  V  +   L + E +I E L   +G+  ++ QI+  I+G FD   
Sbjct: 126 LNLGEIRFDLSSNEVFVGDKKVHLTKSEYQISELLAKRKGQVFSREQIYELIFG-FDGIG 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + + +  HI  +R K + K G +P+++   +GY   WN
Sbjct: 185 DASAISEHIKNIRAKFQ-KYGKNPIETVWGIGYK--WN 219


>gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++  
Sbjct: 61  LEVLRRIRRSSDIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V+  + E     G + +               L  RE  +L+ LM N+   + +  +   
Sbjct: 121 VTVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRNTLMEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G +D   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 181 VCG-YDYIGETNVIDVYVRYLRTKIDDVFKVKTITTVRGVGYVI 223


>gi|148825749|ref|YP_001290502.1| transcriptional regulatory protein [Haemophilus influenzae PittEE]
 gi|148715909|gb|ABQ98119.1| transcriptional regulatory protein [Haemophilus influenzae PittEE]
          Length = 221

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L    G +V
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R    H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A I RR 
Sbjct: 63  LQQWR--SNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFTLAEVAARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E   +++  + R   +  +   L  RE ++LE  M N+ + ++++ I   +  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +DE +    ++ HI  LR+KL
Sbjct: 181 -WDEEISSGALDVHIYNLRQKL 201


>gi|119493257|ref|ZP_01624097.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119452730|gb|EAW33908.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 229

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +R +H+ VP+I ++    +   +   DSG +D + KP    E LARV    R L
Sbjct: 67  IEICRRLRTSHNHVPIILLTAKDEVSDRVTGLDSGANDYIIKPFSLEEFLARVRVHIRHL 126

Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  N       +  F D       R+      +  L  +E  +LEYLM++  + + + QI
Sbjct: 127 QEPN-----ADLLTFYDLSLDRKTREVRRANRLIDLTAKEYDLLEYLMSHPRQVLTRNQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D   + N++E ++  LR KL ++     + + R +GY +
Sbjct: 182 LEQVWG-YDFMGDSNIIEVYVRYLRIKLESEGESRLIQTVRSVGYVL 227


>gi|94499897|ref|ZP_01306433.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
 gi|94428098|gb|EAT13072.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
          Length = 232

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 9/136 (6%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           ++VP+I ++        +   ++G DD + KP   RE++AR+ A+ RR   +  +    P
Sbjct: 78  NEVPIIMLTAKGEEDNKVLGLEAGADDYITKPFSPRELVARLKAVLRR---TTPQGIEDP 134

Query: 131 IRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           I V     DP         E   +   E R+L++ M ++ +  ++TQ+   ++G  +  V
Sbjct: 135 IEVNGLILDPVCHRVSANDEALDIGPTEYRLLQFFMTHQERAYSRTQLLDQVWG-GNVYV 193

Query: 186 EENVVESHISKLRKKL 201
           EE  V+ HI +LRK L
Sbjct: 194 EERTVDVHIRRLRKAL 209


>gi|328885480|emb|CCA58719.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 237

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 15/165 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR   +   A
Sbjct: 72  IRKLTTTPVIMVTARGDVRSRIHGLNLGADDYVVKPYDPGELLARIHAVSRRHAGTEETA 131

Query: 127 ET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            T           GP+ +    R   V GE  PL R+E  +L  L    G    + QI S
Sbjct: 132 ATGTATDGTQLRLGPVTIELPTRRVSVDGESVPLTRKEFDLLALLAQRPGVVFRREQIIS 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++    E      +E H++ LR KLR     + V   R +GY +
Sbjct: 192 EVWRTSWEGTGRT-LEVHVASLRSKLRMPALIETV---RGVGYRL 232


>gi|329850363|ref|ZP_08265208.1| KDP operon transcriptional regulatory protein kdpE [Asticcacaulis
           biprosthecum C19]
 gi|328840678|gb|EGF90249.1| KDP operon transcriptional regulatory protein kdpE [Asticcacaulis
           biprosthecum C19]
          Length = 225

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 26/164 (15%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR------- 117
           R +R  SQVP+I +S        ++  +SG DD + KP   RE+LAR+    R       
Sbjct: 64  RAVREWSQVPIIVLSAREQEADKIEALESGADDYLTKPFAPRELLARIKVALRHAARDAG 123

Query: 118 -RLKV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            R+++   +  R +    RV+ DG D  +     P+   E R+L  L+ + GK +   Q+
Sbjct: 124 PRMEIFERNGLRLDLSARRVWLDGEDVHLT----PI---EYRLLTALIQHPGKVLTHAQL 176

Query: 174 FSAIYGLFDEAVEEN-VVESHISKLRKKLRNKLGFDPVDSKRFL 216
            +A++G    + E+N  +  H   LR+KL++    DP+ S RF+
Sbjct: 177 LNAVWG--RRSTEQNHYLRIHTQHLREKLKD----DPL-SPRFI 213


>gi|320179124|gb|EFW54083.1| Transcriptional regulatory protein basR/pmrA [Shigella boydii ATCC
           9905]
          Length = 222

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E  QS      S +   L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKITGLDVGADDYLVKPFALEELHARIRALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ 
Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IY  +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219


>gi|306834174|ref|ZP_07467294.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304423747|gb|EFM26893.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 230

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 8/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   +  +I ++   S+   +   D G DD + KP    E+LARV A++RR  V
Sbjct: 63  EITRRLRLEKETSIIMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQDV 122

Query: 122 -----SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  N+ + G   +R+    R      +   L +RE  +L  L++N  + + + ++ 
Sbjct: 123 EFKREQGNQGKEGLLGLRLNPQNRSAVRGDDEISLTKREYDLLSVLLSNVNRVMTREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++  +D  +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 ANVWR-YDTDIETNVVDVYIRYLRGKVDIPGKESYIQTVRGMGYII 227


>gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGP 130
             P++ ++        ++  D+G DD + KP  +  +L+R+ A+ RR   +     + G 
Sbjct: 73  STPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIRRGGATRPGVLKLGD 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    R     G    L  +E  +L YLM   G+ V K ++   ++  F  +   N+V
Sbjct: 133 LELDQASRTCRRGGADITLTGKEFALLAYLMQRPGQVVTKAELLDNLWD-FAASATANLV 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E H+S LR+K+    G + + + R  GY +
Sbjct: 192 EVHVSALRRKIDVPFGAETIRTVRGAGYHV 221


>gi|291558418|emb|CBL37218.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
          Length = 222

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 84/160 (52%), Gaps = 3/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++   S    L   + G DD + KP + + + AR++A+ +R    
Sbjct: 64  VCRAIREKSEVPIIVVTSRDSEMDELMSINLGADDFITKPYNTQILSARISAMLKRTHKE 123

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N+  +   +++  +      + ++  L + E RIL  L+ ++   V++ Q+  +++  
Sbjct: 124 KVNDFLQYQGLKLQLNSSTVIYKDQIIELSKNEMRILYTLLQHKESIVSRDQLMESLWQ- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E +++N +  +++++RKKL      D + +KR  GY I
Sbjct: 183 SNEFIDDNTLTVNVNRVRKKLEVAGLKDFIKTKRGQGYMI 222


>gi|291524610|emb|CBK90197.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
          Length = 229

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R +R +    +I ++        +  +++G DD + KP     +L ++ A +RR  
Sbjct: 61  LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++
Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            L  + V+EN +  +I +LR+K+ +     PV  K   G    WN
Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224


>gi|289523923|ref|ZP_06440777.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502579|gb|EFD23743.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 236

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 6/152 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---G 129
           +P+I ++     +  ++  + G DD V KP    E+ AR+  I RR   ++ + ET   G
Sbjct: 78  IPIIILTARRDERDVIEGLELGADDYVKKPFSLAELHARIKTILRRAHPASPQNETIKLG 137

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + + +D      +     L   E  +++ LM N  K V++ Q+ + ++G +    E   
Sbjct: 138 KLELIADADILTYEDIKIVLTPIETELIKILMKNAPKIVSREQLLAKVWGTY--LGETRT 195

Query: 190 VESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           ++ HIS+LR K++   L F+ +++ R  GY +
Sbjct: 196 IDVHISRLRTKVKKAGLNFNLIETVRHRGYRL 227


>gi|153811081|ref|ZP_01963749.1| hypothetical protein RUMOBE_01472 [Ruminococcus obeum ATCC 29174]
 gi|149832969|gb|EDM88052.1| hypothetical protein RUMOBE_01472 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R +R +    +I ++        +  +++G DD + KP     +L ++ A +RR  
Sbjct: 61  LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++
Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            L  + V+EN +  +I +LR+K+ +     PV  K   G    WN
Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224


>gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34]
 gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34]
 gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR
 gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34]
 gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34]
 gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in
           Cd(II), Zn(II), Co(II) resistance [Cupriavidus
           metallidurans CH34]
          Length = 225

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 18/164 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--------R 118
           IR+ S+ P++ ++    +   +  F+ G DD + KP    E+LAR+    R        R
Sbjct: 66  IRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSTSKESER 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L++++   +    RVF      E+  + F L       L  LM  RG+ +++T I S ++
Sbjct: 126 LRIADLDIDVLGRRVFRGTTRIELTNQEFSL-------LHLLMRRRGEVLSRTTIASQVW 178

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G+ FD   + NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 179 GVNFD--TDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLD 220


>gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 230

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 5/149 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE    +   +RA  +VP+I +S        +     G DD + KP    E+ AR+ A+ 
Sbjct: 62  GEDGFSVCERVRAQYEVPVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVL 121

Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR        +N    G I +    R  +V+G    L  +E  +L + + ++   +++ Q
Sbjct: 122 RRSGSISGADSNITSAGKITIDKKARSVKVEGSYIMLTLKEYELLMFFIGHQSHALSREQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   I+G+ D       V++HI  LR KL
Sbjct: 182 LLEQIWGM-DYLGSLRTVDTHIKTLRMKL 209


>gi|94310118|ref|YP_583328.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353970|gb|ABF08059.1| two component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 266

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 24/210 (11%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-V 73
           Y  +   DG   EG   LE   W          A+   L+  G   LE+ R  RA ++  
Sbjct: 48  YEVVHSADGA--EGLRLLEQGGW---------DALVLDLMLPGVDGLEICRRARAMTRYT 96

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPI 131
           P+I  S   S    +   + G DD + KP    E++ARV A+ RR++    + RA+ G +
Sbjct: 97  PIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVEAMARDVRADAGSL 156

Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            +     DP      V G+   L  RE  +L Y   +  K  ++  + +A++G   E   
Sbjct: 157 ELAGLAIDPLAREAAVDGKRLDLTPREFDLLYYFARHPDKVFSRMDLLNAVWGYQHEGY- 215

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           E+ V +HI++LR K+      DP   KR L
Sbjct: 216 EHTVNTHINRLRTKIE----VDPAQPKRIL 241


>gi|313677457|ref|YP_004055453.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
 gi|312944155|gb|ADR23345.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
          Length = 229

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 8/134 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVF 147
           F++G DD + KPI  R +++R+ A +RR    +  NN+   G + +        V G+  
Sbjct: 99  FENGADDYITKPIKPRALMSRINAYFRRDVKKQKDNNKITIGGLTIDRTSYTVSVDGKQV 158

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            LP++E  +L +L  N  K   +  +   I+G  D  V    V+ H+    +K+R K+G 
Sbjct: 159 SLPKKEFELLYFLAQNPNKVFNRDDLLQNIWG-SDVYVLARTVDVHV----RKVREKVGD 213

Query: 208 DPVDSKRFLGYSID 221
             + + + +GY  D
Sbjct: 214 GYISTVKGVGYKFD 227


>gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 226

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 2/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F+ G DD + KP    E++ARV A+ +R ++
Sbjct: 64  ELCRELRDYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 123

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++  + G + +     +  +  +   LP +E  +L  L +  GK   + ++   I+G 
Sbjct: 124 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 183 YDYDGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 223


>gi|271963772|ref|YP_003337968.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506947|gb|ACZ85225.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 226

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122
           R++RA S++P+I  +        +   D+G DD V KP    ++ AR+ A+ RR   S  
Sbjct: 65  RMLRAVSRIPVIVATARDGDAEMVRLLDAGADDYVVKPFSAAQLDARIRAVLRRTGESRT 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++    G +RV    R+  + G    L  +E  +L YL A  G+ + K ++ + ++ +  
Sbjct: 125 DSSVTVGGLRVDPRTREASLDGAPLDLSPKEFDLLHYLAARPGEVITKRELLTHVWQIPY 184

Query: 183 EAVEENVVESHISKLRKKL 201
              ++  V+ H+S LR+KL
Sbjct: 185 GGADKT-VDVHLSWLRRKL 202


>gi|207856439|ref|YP_002243090.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584398|ref|YP_002638196.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|206708242|emb|CAR32542.1| response regulator [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224468925|gb|ACN46755.1| copper resistance protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 248

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 40  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 88

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 89  RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 148

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 149 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 206

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + R +GY +
Sbjct: 207 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|163847093|ref|YP_001635137.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|163668382|gb|ABY34748.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
          Length = 245

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S VP++ I+        +  F  G D+ + KP    E +ARV AI RR+ +   R 
Sbjct: 84  IRAKSDVPIVIITAREGTDDIVQDFRRGADEYITKPFKVAEFVARVEAILRRVDMQKART 143

Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G + + +      V+G+   L   E  +L +L AN G+   +  +F  ++G +
Sbjct: 144 APTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFREVWG-Y 202

Query: 182 DEAVEENVVESHISKLRKKL 201
           +   E N+V+  + +LR+K+
Sbjct: 203 EYVGETNLVDVCVRRLREKV 222


>gi|94313751|ref|YP_586960.1| DNA-binding response regulator [Cupriavidus metallidurans CH34]
 gi|93357603|gb|ABF11691.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Cupriavidus metallidurans CH34]
          Length = 235

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 6/150 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           Q+P++ ++   ++ + +   D+G DD + KP+   E+ AR+ A+ RR   +       GP
Sbjct: 72  QMPVVVLTARDAVASRISGLDAGADDYLVKPVELDELAARLRAVTRRAAGMPEPVWRHGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +      R     G+   L  RE  +LE L+    + + +  +   +Y  +D+  E N +
Sbjct: 132 LEYQPAARLALWHGKAVDLTSRESMLLELLLTYPNRVLTREFLRDKLYD-WDKGSESNTL 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E HI  LRKKL   +    V + R  GY++
Sbjct: 191 EVHIHHLRKKLHPGI----VRTLRGAGYTL 216


>gi|219667424|ref|YP_002457859.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537684|gb|ACL19423.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 7/153 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S  P+I ++    L+  L   + G DD + KP   RE++AR+ A+ RR  +
Sbjct: 61  EICREIRKISATPVIMLTAKVELEDRLQGLNLGADDYIVKPFSPREVVARIKAVLRRTHI 120

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +++      + + +   +   Q E   L   E +IL  L    G+  ++ Q+   
Sbjct: 121 ETALLADSITYDNGLTIDNARHEVRFQDEAILLTPTEFKILGALAKYPGRVYSRGQLVQI 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + G  D   +E V+++HI KLR+KL    G DP
Sbjct: 181 VQG-HDFGGDERVIDAHIKKLRQKLEGVPG-DP 211


>gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
 gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes]
 gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
          Length = 240

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139
           G DD + KP   RE++AR+ AI RR   +  +AE               G +++  D  +
Sbjct: 99  GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEATILIGDLKILPDSYE 155

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             +Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR 
Sbjct: 156 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 214

Query: 200 KL 201
           K+
Sbjct: 215 KI 216


>gi|320352638|ref|YP_004193977.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320121140|gb|ADW16686.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 229

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 19/229 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + D        +G ++   +  E ++ L ++   D S +   ++  G    
Sbjct: 3   ILLIDDDTELCDLLTEYLEQEGFAVSACH--EAQQGLTTALAGDHSFLILDVMLPGFNGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP++ ++        +   + G DD + KP + RE++AR+ AI RR + 
Sbjct: 61  DLLRKIRQASTVPVLMLTARGDEVDRIVGLELGADDYLPKPFNPRELVARIRAIQRRGEN 120

Query: 122 SNNRAETGPIRVFSDG--RDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 T P ++ +D    DP  +         PL   E  +L  L+   G+ V + ++ 
Sbjct: 121 GLGNRRTAPGKLLADDIVLDPGTRTVWRHDVEIPLTTVEFALLHALLKRIGQVVNREELA 180

Query: 175 SAIYG----LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
               G    LFD +     ++ HIS LRKKL RN  G + + + R +GY
Sbjct: 181 MEALGRKLELFDRS-----IDVHISSLRKKLGRNVNGIERIKTVRSVGY 224


>gi|313888461|ref|ZP_07822128.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845490|gb|EFR32884.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 232

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 28/194 (14%)

Query: 48  AIEAFLIGKGEKV------LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDS 93
            +EA  I K EK+      L +P++        +R  S VP+I +S        +   + 
Sbjct: 36  GLEALEIFKNEKIDLIIMDLMMPKLSGEEAIIKLREVSFVPIIILSAKSEDTDKIFGLNI 95

Query: 94  GVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
           G DD V KP +  E++ARV +  RR     LK   N  E G I++    +   V+ +   
Sbjct: 96  GADDYVQKPFNPMELIARVKSNLRRFYAYDLKKDRNFIEIGSIKLDLSQKIAYVEDKPVA 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L   E +ILE LM N  +  +  +I+ +++   + A+E   V  HI ++R+K+       
Sbjct: 156 LTSIEFKILELLMKNPNRVFSIEEIYESVWN--EPAMEAKTVTVHIRRIREKIE------ 207

Query: 209 PVDSKRFLGYSIDW 222
            V+ K+ +   + W
Sbjct: 208 -VNPKKPMYLKVQW 220


>gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 2/157 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
           R+ +   +VP+I ++    +   +   D+G DD + KP    E+LARV A  RR +  N 
Sbjct: 67  RLRQTGDKVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANLRRTQEENP 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  +R+    R+      +  L  +E  +LEYLM++  + + + QI   ++G +D 
Sbjct: 127 EEILFNDLRLNRSTREVYRANRLIELTAKEFELLEYLMSHPRQVLTRDQILERVWG-YDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + N++E ++  LR KL        + + R +GY +
Sbjct: 186 MGDSNIIEVYVRYLRLKLEENGEKRLIQTIRGVGYVL 222


>gi|303234960|ref|ZP_07321584.1| putative KDP operon transcriptional regulatory protein KdpE
           [Finegoldia magna BVS033A4]
 gi|302493815|gb|EFL53597.1| putative KDP operon transcriptional regulatory protein KdpE
           [Finegoldia magna BVS033A4]
          Length = 242

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L +  R  S  P+I IS   + +  ++  D+G DD + KP +  E+LARV +  RRL 
Sbjct: 64  IDLIKKFREFSTTPIIVISARSNDEDKIEALDAGADDFLTKPFNVDELLARVRSTIRRLN 123

Query: 121 VS-NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            S NNR       E G I++    R   V+GE   L   E  +L  L  N GK +    I
Sbjct: 124 YSENNRIDNNVIFENGDIKIDYPSRSVFVKGEEIHLMPIEYSLLCLLSKNIGKVLTHQYI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              I+  + ++ + + +  +++ LRKK+
Sbjct: 184 LKTIWVNYLDS-DLSSLRVYMTSLRKKI 210


>gi|253730310|ref|ZP_04864475.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726003|gb|EES94732.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 221

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I IS        +     G DD + KP +    +A++ A+ RR   L V+N
Sbjct: 66  IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +        +  D      Q +   L   E +IL  L  N  K V++T +    +   + 
Sbjct: 126 DSMTVKGCTLILDEAKVVYQEQSIQLSLTELQILNLLFQNEDKYVSRTALIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +++N +  ++++LRKKL N +G  D + +K+ +GY +
Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221


>gi|239928855|ref|ZP_04685808.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437180|ref|ZP_06576570.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291340075|gb|EFE67031.1| response regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 221

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 15/159 (9%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A   VP++ ++         +  D+G DD + KP  +  ++ARV A+ RR       A  
Sbjct: 69  AGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR----RQGAGA 124

Query: 129 GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            P+ V  D R       VF       L  +E  +LE L+   G+ V+K +I   ++    
Sbjct: 125 SPVHVHGDLRVDTAARRVFLGEDEVALTAKEFSVLEQLVLRAGEVVSKAEILEHVWDFAY 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  + N+VE ++S LR+KLR  L    + + R  GY ++
Sbjct: 185 EG-DPNIVEVYVSALRRKLRAGL----IRTVRGAGYRLE 218


>gi|256823322|ref|YP_003147285.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256796861|gb|ACV27517.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 228

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 3/132 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149
           FD+G DD + KP    E+L R  A+ RR ++  +++ + G + V    +  + +G+   L
Sbjct: 95  FDAGADDYLTKPFDLTELLLRCQALARRHQLHQSQSIQIGELVVNEKQQLAQREGQTLKL 154

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
              +  IL  L+      V++ Q+ + I+G  D+A + +VV SHI  LR+ L        
Sbjct: 155 SSTDFTILMLLVHAYPNAVSRQQLINKIWG--DDAPDSDVVRSHIYTLRQALDKPFATPM 212

Query: 210 VDSKRFLGYSID 221
           + +   +G+ ++
Sbjct: 213 LTTLHGIGFKLE 224


>gi|268592860|ref|ZP_06127081.1| QseB [Providencia rettgeri DSM 1131]
 gi|291311649|gb|EFE52102.1| QseB [Providencia rettgeri DSM 1131]
          Length = 220

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 12/137 (8%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAE 127
           P++ ++   +L   +     G DD + KP    E++AR+ A+ RR       K+++   E
Sbjct: 74  PVLILTARDALDQRVQGLQQGADDYLCKPFALMEVMARLQALIRRRSGQLSSKLTHGDVE 133

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
             P+ +         QGE   L  +E  +L   M N  K  ++  I   +Y  +DE V  
Sbjct: 134 MDPVAMTV-----TQQGEPVQLKGKEFALLSLFMHNPNKVFSRPLIEEKLYN-WDEEVSS 187

Query: 188 NVVESHISKLRKKLRNK 204
           N VE HI  LR+KL NK
Sbjct: 188 NSVEVHIHHLRRKLGNK 204


>gi|167560951|ref|ZP_02353867.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
          Length = 159

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 2/158 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +    + L   +G  ++     E  + +  + R D   ++  L G   K L
Sbjct: 3   LLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKEL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L R+ R    VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR   
Sbjct: 63  -LARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           V       G +      R+ +  G    L RRE  ILE
Sbjct: 122 VGATLLACGDLVYLFATREFQCSGVPLVLRRREHAILE 159


>gi|19703920|ref|NP_603482.1| two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296327490|ref|ZP_06870036.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19714090|gb|AAL94781.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296155316|gb|EFG96087.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 224

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA+ ++  ++ ++    +   +   D G DD + KP   RE++AR+ A+ RR K
Sbjct: 61  EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRR-K 119

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N  N  +   + V +  +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++
Sbjct: 120 YGNISNELQIDDLIVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               E  E N+++  I  +RKK+        + +KR LGY
Sbjct: 180 DYAYEG-ESNIIDVLIKNIRKKIDLGDSKPLIHTKRGLGY 218


>gi|16080525|ref|NP_391352.1| two-component response regulator YvcQ [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311421|ref|ZP_03593268.1| hypothetical protein Bsubs1_18801 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315748|ref|ZP_03597553.1| hypothetical protein BsubsN3_18717 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320663|ref|ZP_03601957.1| hypothetical protein BsubsJ_18680 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324948|ref|ZP_03606242.1| hypothetical protein BsubsS_18836 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321313022|ref|YP_004205309.1| two-component response regulator YvcQ [Bacillus subtilis BSn5]
 gi|81814897|sp|O06978|YVCP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yvcP
 gi|1945655|emb|CAB08062.1| hypothetical protein [Bacillus subtilis]
 gi|2635985|emb|CAB15477.1| two-component response regulator [YvcQ] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|320019296|gb|ADV94282.1| two-component response regulator (YvcQ) [Bacillus subtilis BSn5]
          Length = 237

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR  S  P+I IS        +   ++G DD + KP H   ++A++ ++ RR      
Sbjct: 65  RQIRTISNAPIIFISARTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYS 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L   +   E G + ++ D  + E         ++E ++L   +    K V++ ++  A
Sbjct: 125 PSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQKEFQLLSIFVREHKKIVSRDELLEA 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   D  V++N +  ++++LR+KL N    D + + R  GY    N
Sbjct: 185 LWDDVD-FVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVN 230


>gi|331092535|ref|ZP_08341357.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400756|gb|EGG80359.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 232

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 27/194 (13%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRI--------IRAHSQVPL 75
           EG+N L+    EE L+   RE+   ++  +I      + +PR+        IR  + +P+
Sbjct: 24  EGYNVLKAYDGEEALKVLKREE--KVDLLVID-----VMMPRLDGIRATLKIREENSLPI 76

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNRA--E 127
           I +S        +   + G DD V KP +  E++ARV +  RR        V NN     
Sbjct: 77  IILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTKLGSTVVQNNNTVYT 136

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +  D ++  V GE   L   E  IL  LM N+GK  +  QI+ +I+   D    +
Sbjct: 137 VGGLSIDDDLKEVTVDGEPVKLTPIEYNILLLLMKNQGKVFSIDQIYESIWN-EDAIGAD 195

Query: 188 NVVESHISKLRKKL 201
           N V  HI  +R+K+
Sbjct: 196 NTVAVHIRHIREKI 209


>gi|326797358|ref|YP_004315178.1| PhoB family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326548122|gb|ADZ93342.1| two component transcriptional regulator PhoB, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 231

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 101/215 (46%), Gaps = 24/215 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            ++IDD A +++  IA+     + + G+  LE E            R D+  ++  +   
Sbjct: 6   VLIIDDEAPIRE-MIAV----ALEMAGYEYLEAENAQHGHEIIVDHRPDLILVDWMM--P 58

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++  S   ++P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GGSGIELTRRLKKDSTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   +  +    PI V     DP      +  +   +   E R+L++LM ++ +  
Sbjct: 119 AVLRR---ATPQGVDEPIEVDGLLLDPISQRVSIGNKPLEMGPTEYRLLKFLMTHQERAY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+   ++G  +  VEE  V+ HI +LRK + N
Sbjct: 176 SRAQLLDQVWG-GNVYVEERTVDVHIRRLRKAIGN 209


>gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 228

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 5/185 (2%)

Query: 38  LQSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           L SS   DV  ++  L I  G +V    R    H+  P++ ++   S+   +   ++G D
Sbjct: 46  LSSSNPYDVIILDVLLPIKNGFEVCSELRASGNHT--PVLMLTALDSVDERVKGLNTGAD 103

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           D + KP   +E+LARV A+ RR + S +R      + + +     +   +   L  +E R
Sbjct: 104 DYLVKPFAFKELLARVNALLRRPRESFDRVLRVSDLSIDTVSHTVKRGDKEIELSPKEYR 163

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +LE+L  N  + +++TQI  +++   D   + NVV+ +I  LRKK+ +      +++ R 
Sbjct: 164 LLEHLARNAHQVLSRTQIAESVWDQ-DFFSDSNVVDVYIRYLRKKIDDPFPTKLINTVRG 222

Query: 216 LGYSI 220
            GY +
Sbjct: 223 FGYKL 227


>gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 233

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 16/171 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R  SQVP++ ++     +  +     G DD V KP   +E+  RVA++ RR +
Sbjct: 65  LEVCKRLRQVSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRRAR 124

Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +            G +R+    R   + G   PL  RE  +L + +A+ G   ++  +  
Sbjct: 125 MPRPEPAAAVLVDGDLRLQMKARTATLSGRELPLTTREFDLLAFFLAHPGVAYSRADLLE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
            ++    +  +++ V  H+ +LR+K+      DP    R      +GY  D
Sbjct: 185 KVWSW--DFGDQSTVTVHVRRLREKIER----DPAKPTRVATVWGVGYRYD 229


>gi|296452179|ref|ZP_06893889.1| response regulator [Clostridium difficile NAP08]
 gi|296877533|ref|ZP_06901566.1| response regulator [Clostridium difficile NAP07]
 gi|296259006|gb|EFH05891.1| response regulator [Clostridium difficile NAP08]
 gi|296431545|gb|EFH17359.1| response regulator [Clostridium difficile NAP07]
          Length = 231

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S VPLI +S   S    +   ++G DD + KP     ++ ++  I RR+    N +
Sbjct: 72  IRAISNVPLIFLSSRDSDMDLIMGINNGADDYITKPFSIDILVTKINGIIRRVY---NYS 128

Query: 127 ETGPI-----RVFSDGR---DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  I      +F  G+     + + +   L + E +IL  L+ N+ + V++  +   ++
Sbjct: 129 DSNSILYCEDLMFDVGKGIIKHKYKDKSIELTKNEIKILTLLLKNKNRVVSRESLMMTLW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              DE V +N +  ++++LR K++ +LGFD  + +K+ +GY I
Sbjct: 189 D-NDEFVTDNALTVNMNRLRSKVK-ELGFDDFIKTKKGIGYII 229


>gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC
           12478]
          Length = 228

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 10/147 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173
           K  ++ AE+  +R FSD     V  EV        L R E  +LE L+AN  + + +++I
Sbjct: 120 K-PDDTAESVAMR-FSDLSLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200
              ++G FD     N +E ++  LR+K
Sbjct: 178 LEEVWG-FDFPTSGNALEVYVGYLRRK 203


>gi|218294955|ref|ZP_03495809.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244863|gb|EED11387.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 2/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P++ ++   +++  +     G DD + KP H  E+LAR+  +  R + 
Sbjct: 62  EVARRIRATDDTPILVLTAQDAVERKVSLLSEGADDYLVKPFHPAELLARI-QVQLRHRE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + ++   R    + +   L  +E  +L  LM   G+  ++ +I   ++G  
Sbjct: 121 GSEVLSVGELTLYPKRRQVFFREQEVRLSPKEFDLLALLMGRPGRVFSRQEIEEKVWG-R 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               + NV++ H++ LR KLR    +  + + R LGY++
Sbjct: 180 PLGRDSNVLDVHVANLRAKLREAGAYGYLRTVRGLGYAL 218


>gi|194292542|ref|YP_002008449.1| response regulator in two-component regulatory system with cpxa,
           regulates genes involved in folding/degrading
           periplasmic proteins (ompr family) [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226446|emb|CAQ72395.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 239

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 11/206 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +LIDD   +          D  ++   ++ E  E L +    DV+ ++  L  G G   L
Sbjct: 13  LLIDDDLELAQMLREYLEPDHCTVTLAHTREQGETLLARNDYDVALLDLMLPDGNG---L 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R+ RA SQ P+I  + +      +   + G DD ++KP   RE+ AR+ A+ RR + 
Sbjct: 70  DLLRLHRARSQRPVIMFTAHGDEADRVLGLELGADDYLSKPFSPRELRARMHAVLRRFQC 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175
           +   A   P       R     GE         L   E+R+LE LM + G+ VA+ +I  
Sbjct: 130 AMPAAGASPWLEAGALRLNLASGEAIHGAARSTLTGAEQRVLEILMRSAGRVVAREEIGR 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
              G   E  + + +++H+S LR+KL
Sbjct: 190 FALGRAPERYDRS-LDTHVSALRRKL 214


>gi|152996638|ref|YP_001341473.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837562|gb|ABR71538.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 232

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 15/162 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++        +   + G DD ++KP + RE+LAR+ AI RR        
Sbjct: 67  IRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQEREDD 126

Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-- 179
            T  I +         R   ++GE+  L   E  +LE ++   G+ + K ++     G  
Sbjct: 127 PTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQELSEKALGRK 186

Query: 180 --LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
             ++D +     ++ HIS LRKK+ N    DP + + R +GY
Sbjct: 187 LTMYDRS-----LDMHISNLRKKIGNLENGDPRIKTVRGVGY 223


>gi|51245737|ref|YP_065621.1| Pho two-component system sensor histidine kinase [Desulfotalea
           psychrophila LSv54]
 gi|50876774|emb|CAG36614.1| related to two-component system response regulator (Pho family)
           [Desulfotalea psychrophila LSv54]
          Length = 242

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 24/219 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LV+ G+     D G           EE L   ARE    I   ++  G   LE+ + IR 
Sbjct: 23  LVRAGFNVTCADSG-----------EEALGCLAREAFDCILLDIMLPGISGLEVCQSIRQ 71

Query: 70  H-----SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +     +  P+I ++     +  +D  + G DD + KP   + ++ARV A+ RR + +  
Sbjct: 72  NEGKLDAGSPIIMMTAKGEEEDIIDGLEKGADDYITKPFSPKVLVARVKAVVRRGQKAEA 131

Query: 125 RAETGPIR----VFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++G I     V   GR +   QG+   L   E  IL  L    G    + QI  A+ G
Sbjct: 132 HSDSGHISIANLVIDQGRYEVTAQGKAIQLTLTEFGILVLLAEKPGWVFTRQQIIDAVRG 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +D  V    ++  I  LRKKL        +++ R +GY
Sbjct: 192 -YDFLVTPRAIDVQIFGLRKKL--GAAGQSIETVRGIGY 227


>gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 268

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   + 
Sbjct: 87  RRLRAESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRGSA 146

Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            AE+            G + V ++ R    +GE   L   E  +LE L  + G+ V + +
Sbjct: 147 AAESRDVPAGQGVLRVGDLVVDTNRRQVTREGERIGLTYTEFSLLELLFRDPGRVVPRAE 206

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201
           I   ++G     A +  VV+ ++++LR KL
Sbjct: 207 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 236


>gi|333030029|ref|ZP_08458090.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332740626|gb|EGJ71108.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 93/193 (48%), Gaps = 20/193 (10%)

Query: 21  DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVP 74
           D G S++  NS E       +   D+S  + FL+        G ++  + R  +   + P
Sbjct: 25  DAGYSVDAANSAE------EALAMDLSKYDLFLLDVMMGEISGYRLASMLREQKETEKTP 78

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134
           +I ++   +    +  F++G DD ++KP   RE+L R+ A+ +R         T  + V+
Sbjct: 79  IIFLTAKDTENDMVAGFNAGADDYISKPFSLREVLIRIKAVLKRTNEGGKVKSTAKL-VY 137

Query: 135 S------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           +      + +   + GE   L +RE  IL+ L+  + +  ++ +I   ++ + +E + + 
Sbjct: 138 NTLVIDLEQKKVTIDGEDISLTKREFEILQLLLEQKDRVFSRQEILDKVW-VNEEDISDR 196

Query: 189 VVESHISKLRKKL 201
            V+ +I+++RKK+
Sbjct: 197 TVDVNITRIRKKI 209


>gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 242

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 12/161 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE+V    R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++
Sbjct: 64  GERVC---RAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALF 120

Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR  +++       + G + +   G    V+G    L   E ++L  L  + G+   + +
Sbjct: 121 RRTHLADEPQVEVLDFGDLVIDISGHKILVEGNEVDLTASEFKLLTTLARHPGRVYNRME 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +   + G +D    E  ++SH+    K LR KLG DP   K
Sbjct: 181 LVEKVLG-YDFEGYERTIDSHV----KNLRAKLGDDPKKPK 216


>gi|323965502|gb|EGB60956.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323975545|gb|EGB70646.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|327250054|gb|EGE61773.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           STEC_7v]
          Length = 222

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E  QS      S +   L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ 
Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMDGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IY  +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219


>gi|300311515|ref|YP_003775607.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074300|gb|ADJ63699.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA S +P++ ++        +   + G DD V KP   REI AR+ AI RR    NN
Sbjct: 65  RRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRASAENN 124

Query: 125 RAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + ++ + R     G+   L   E  +LE L  N GK V+K  +     
Sbjct: 125 EQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLSEQGL 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           G      + N ++ H+S +R+K+   LG D
Sbjct: 185 GRPLARFDRN-IDVHLSSIRQKI-AALGSD 212


>gi|242240600|ref|YP_002988781.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
 gi|242132657|gb|ACS86959.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 226

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 14/170 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +R   Q+P+I ++        +   + G DD V KP + RE++AR+ A+ RR +
Sbjct: 60  IDVLRQVRRDRQIPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119

Query: 121 VSNNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +R+E          G + +    R  E  G+ F L   E  +LE LM +  + V K 
Sbjct: 120 ---DRSEASADVSTVSYGDLVINPSTRSSEWCGKAFDLTASEFNLLELLMRSSERVVTKD 176

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           ++     G   EA + + V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 177 ELSEKCLGRRREAYDRS-VDVHISNIRQKLALLDGCTLTIETVRSVGYRI 225


>gi|239636730|ref|ZP_04677732.1| DNA-binding response regulator [Staphylococcus warneri L37603]
 gi|239598085|gb|EEQ80580.1| DNA-binding response regulator [Staphylococcus warneri L37603]
          Length = 224

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 9/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ A+YRR+    V
Sbjct: 64  RKMRQVSNVPILFLSSRDNPMDQVMSMELGADDYIQKPFYTNVLIAKLQAVYRRVYEFGV 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R       V    +D   +G +   L + E  ILE L+  R + V++  + +A++  
Sbjct: 124 EEKRTLNWQDAVVDLSKDSIQKGDQAIFLSKTEMIILEMLVNKRNQIVSRDTLITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
            DEA V +N +  ++++LRKKL +++G D  +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKL-SEIGMDSAIETKVGKGY 220


>gi|229590582|ref|YP_002872701.1| response regulator protein [Pseudomonas fluorescens SBW25]
 gi|229362448|emb|CAY49354.1| response regulator protein [Pseudomonas fluorescens SBW25]
          Length = 220

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 28/202 (13%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKV---LELPR-----IIR----AHSQVPLIGISDYPS 83
           +WLQ       SA+ A L    + V   L LPR     ++R    + + VP++ ++   +
Sbjct: 28  DWLQDGN----SALHALLSETFDAVVLDLGLPRMDGLEVLRRLRDSGATVPVLILTARDA 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRD 139
            +  +   D+G DD + KP    E+ AR+ A+ RR   S  RA    E   I +    + 
Sbjct: 84  TEDRIAGLDAGADDYLVKPFDLAELKARLRALLRR---SAGRARVVIEHAGICLDPSTQQ 140

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
               G    L  +E ++L  L++  G+ + + Q+   +YG ++E  E N +E HI  LRK
Sbjct: 141 VSYHGVPVLLTPKEYQLLHELLSPPGRVMTRDQLMQLLYG-WNEEAESNTLEVHIHHLRK 199

Query: 200 KLRNKLGFDPVDSKRFLGYSID 221
           K  ++L    + + R +GY ++
Sbjct: 200 KFSSEL----IRTVRGVGYLVE 217


>gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 238

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 10/157 (6%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
             +P++ ++   S+   +     G DD V KP    E++AR+ AI RR   + ++A+   
Sbjct: 77  QHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRRSH-AEDQADEDR 135

Query: 131 IRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           +  F       D  +    G V  +   E  +L YLM N  + ++K QI   ++  +D  
Sbjct: 136 VLTFEDLTLNEDTYEVSRAGRVIEVSPTEFNLLRYLMQNPHRVLSKAQILDHVWD-YDFR 194

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            E  +VES+IS LR+K+  + G  P + +KR +GY +
Sbjct: 195 GEMGIVESYISYLRRKIDTE-GLPPLIHTKRGVGYVL 230


>gi|226357957|ref|YP_002787697.1| response regulator, OmpR [Deinococcus deserti VCD115]
 gi|226320200|gb|ACO48193.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 227

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S+ P++ ++   ++ + +   ++G  D + KP H  E++ARV    R+ + 
Sbjct: 63  EVARRLRRTSRTPIVVLTGMDTVASKVGLLEAGASDYLTKPFHPEELVARVRVQLRKHQQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GL 180
           +      G ++++   +    QG    L  +E  +L  L    G+  ++  I + ++ G+
Sbjct: 123 AGE-VSVGALKLYLQQQVCLYQGREVRLSPKEFELLGLLAEVPGRVYSRDVIVAELWPGV 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V  +VVE H++ LR KLR   G   + + R +GY++
Sbjct: 182 VD--VGRSVVEVHMANLRSKLREVGGAGVLRTVRGVGYAL 219


>gi|225017711|ref|ZP_03706903.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
           DSM 5476]
 gi|224949504|gb|EEG30713.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
           DSM 5476]
          Length = 232

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 19/142 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN------NRA--ETGPIRVFSDGRDPEVQGE 145
           G DD + KP H  E++ARV A  RR    N      N A  E   + +  D     + G+
Sbjct: 95  GADDYITKPFHPLEMVARVKAQLRRYTCYNEGRQKQNSAVIELHGLVIDKDTHTCSLYGK 154

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
             PL   E  IL  L  N GK ++  Q+F  I+G        N V  HI ++R+K+    
Sbjct: 155 QLPLTPTEFSILWLLCENCGKVISSEQLFHEIWGEKYFESSNNTVMVHIRRIREKMN--- 211

Query: 206 GFDPVDSKRFL------GYSID 221
             +P  + +F+      GY I+
Sbjct: 212 --EPARNPKFIQTVWGVGYKIE 231


>gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 290

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 22/173 (12%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   + 
Sbjct: 89  RRLRAESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGPGSA 148

Query: 125 RAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            AE             G + V ++ R     GE   L   E  +LE L    G+ V + +
Sbjct: 149 TAEIRDLPVGQGVLRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVPRAE 208

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYS 219
           I   ++G     A +  VV+ ++++LR KL      DP + +     R +GYS
Sbjct: 209 ILEQLWGYPPRRAADLRVVDVYVARLRGKLEP----DPRNPELILTVRGIGYS 257


>gi|315640045|ref|ZP_07895170.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315484173|gb|EFU74644.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 224

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 7/159 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122
           IR  S VP+I IS   +    +   + G DD V KP     ++A++ A+ RR    +K +
Sbjct: 67  IREVSNVPIIFISSRNTNMDMIMAMNMGGDDFVTKPFELDVLVAKINALLRRSYNYVKGT 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                   + +  +    E+ G +  L + E R+L  LM N GK +++ ++  A++   D
Sbjct: 127 QETFTHNGLVLNVENSSVEINGTLVDLSKNEYRLLFILMKNHGKILSREKLLRALWD--D 184

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E  V++N +  +I++LR+K+      + +++K   GY I
Sbjct: 185 ERFVDDNTLTVNINRLRRKIEQAGVQNYIETKVGQGYII 223


>gi|313888991|ref|ZP_07822650.1| putative response regulator ArlR [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312844977|gb|EFR32379.1| putative response regulator ArlR [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 226

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 10/151 (6%)

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPI 131
           +I I+   S    +   D G DD + KP    E+L+RV A+ RR     V     +   I
Sbjct: 77  VIMITAKTSEYDVISALDEGADDYIKKPFSVMELLSRVGAVERRAGKKVVDTGVLDYNGI 136

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    R   + G       +E  +L+YL+ N+   +++ ++ + I+G +D   E   V+
Sbjct: 137 VIKDKNRSVTIDGVQVDFSLKEYEVLKYLILNKDIVISREKLLTEIWG-YDYEGETRTVD 195

Query: 192 SHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
            HI    K +R+KLG+  D + + R +GY +
Sbjct: 196 MHI----KLIRDKLGYKRDSIKTIRGIGYMM 222


>gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912]
 gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912]
          Length = 233

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 22/224 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           + K+GY  L   DG            E L+  A E+   I   L+      LE+ R IR 
Sbjct: 21  MAKEGYEVLTAFDG-----------REALEVFAAENPDVIILDLMLPEIDGLEVARTIRK 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NN 124
            S VP+I +S   +    +   + G DD V KP  +RE+ ARV A+ RR + +      N
Sbjct: 70  TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEFAADPQLEN 129

Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            A+T    G + +  D    +   +   L  RE  +L +L  + G+ + +  +   ++G 
Sbjct: 130 DADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREHLLETVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
           +D   +   V+  + +LR+K+ +  G  + + ++R +GY +  N
Sbjct: 189 YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|296162888|ref|ZP_06845668.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295886859|gb|EFG66697.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 220

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 14/154 (9%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   ++   +    +G DD + KP    E++AR  A+ RR        ET   +
Sbjct: 73  TPVLVMTARDTVADRVGGLTAGADDYLGKPFDLTELIARCRALLRR--AHGRSVETIEYQ 130

Query: 133 VFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
             S   DP        G   PL  RE  +L  L+ ++G  +++ ++  ++YG + E VE 
Sbjct: 131 DLS--VDPSTFTVTRNGLRQPLTSRECAVLVELLTHQGTPLSRARLEESLYG-WQEEVES 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           N +E H+S LRK    KLG   + + R +GY ++
Sbjct: 188 NAIEVHVSNLRK----KLGPGLIRTIRGVGYVVE 217


>gi|293605203|ref|ZP_06687591.1| response regulator [Achromobacter piechaudii ATCC 43553]
 gi|292816388|gb|EFF75481.1| response regulator [Achromobacter piechaudii ATCC 43553]
          Length = 233

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 19/182 (10%)

Query: 48  AIEAF-----------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           A+EAF           L+  G   L++ R +RA S  P++ ++        +   +SG D
Sbjct: 37  AVEAFRRHDPAITILDLMLPGRDGLQVCRDLRAFSSAPILMLTAREDDLDQILGLESGAD 96

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           D V KP+  R +LAR+ A+ RR      +A   E GP+ +    R     G    L   E
Sbjct: 97  DYVIKPVEPRVLLARIRALLRRHNKGQEQADQLEFGPLSIDRHTRSVRHAGVEVDLTTME 156

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             +L  L +  G+ + +  + +A+ G     +E N ++  +     KLR KL  DP D  
Sbjct: 157 FEMLWALASQAGQVLTRDDLLNAVRG-----IEFNGLDRSVDVCVSKLRRKLDDDPRDPA 211

Query: 214 RF 215
           R 
Sbjct: 212 RI 213


>gi|293395128|ref|ZP_06639414.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291422305|gb|EFE95548.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 224

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 5/160 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+ +    +P++ ++    +   +   + G DD + KP    E+ AR+ A+ RR + V
Sbjct: 63  LARLRKRGQNMPVLLLTARTDVADRVKGLNLGADDYLTKPFELDELEARIRALLRRSVGV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    + G +    +G    +  +   L  RE  +L  L+  RG+ VAK Q+F  ++ L 
Sbjct: 123 TQQALQFGALTYHDEGYFL-LDDKPLALTPRELAVLTTLIHRRGRPVAKQQLFEQVFTLS 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DEA  E+ +E ++ ++RKKL        + + R LGYS++
Sbjct: 182 DEANPES-IELYVHRVRKKLHGS--NVAIVTLRGLGYSLE 218


>gi|302540933|ref|ZP_07293275.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458551|gb|EFL21644.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
           ATCC 53653]
          Length = 249

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 15/139 (10%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFS---DGRDPEVQ-- 143
           +G DD V KP    E+L R+ AI RR    +       ET  +R      D R  EV   
Sbjct: 103 AGGDDYVGKPFSIEEVLLRIRAILRRTGHDVPYGAGEDETEVLRYGDLELDERAHEVHRA 162

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           G+  PL   E ++L  LM N G+ ++K++I   ++G FD + +  +VE+++  LR+K+ +
Sbjct: 163 GQYIPLSPTEFKLLTLLMENAGRVLSKSRILDRVWG-FDFSGDGRIVETYVRYLRRKIDH 221

Query: 204 KLGFDP--VDSKRFLGYSI 220
               DP  + ++R +GY +
Sbjct: 222 ---LDPPLIHTERGVGYCL 237


>gi|251791731|ref|YP_003006452.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247540352|gb|ACT08973.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 223

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 21/212 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+ DG  A     G+   GFN     +W  +  RE ++A+ +         L
Sbjct: 3   ILVIEDDRLIGDGIKA-----GLIKLGFNV----DWF-TQGREGMNALTSAPYDAVLLDL 52

Query: 62  ELPRI--------IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
            LP I         R H   VP++ ++   +L+  +     G DD + KP    E+ AR+
Sbjct: 53  SLPEIDGLDILRQWRQHGYDVPVLVVTARDALEQRVQGLQQGADDYLCKPFELAEVAARL 112

Query: 113 AA-IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A I RR          G + +    R     G    L  RE  +LE  + N    + + 
Sbjct: 113 QALIRRRYGQLQPVLRHGAVTLDLGSRQVTHNGVSLALKSRELALLELFLMNPTHILTRN 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           Q+   +Y  +D+ V  N VE HI  LR+KL N
Sbjct: 173 QLEEKLYS-WDDEVSSNAVEVHIHHLRRKLGN 203


>gi|251782387|ref|YP_002996689.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391016|dbj|BAH81475.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127270|gb|ADX24567.1| response regulator protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 221

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 14/158 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           IR H  +P+I IS       T+   + G DD V+KP     + A++AA  RR +      
Sbjct: 69  IRKHLTIPIIFISSSNDEMDTVMALNMGGDDFVSKPFSLTILDAKIAAFLRRAQQFTSDD 128

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +S ++ +      FS+G       E   L   E +IL  LM    + V+K +I   ++  
Sbjct: 129 ISLDQFKLHFDGTFSNG------NEAVTLSPTEHKILTILMTRHQEIVSKEEILERLWE- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            D  ++ N +  ++++LRKK+   +GFD + + R +GY
Sbjct: 182 NDNFIDHNTLNVNMTRLRKKIAT-IGFDRIHTIRGVGY 218


>gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes]
 gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes]
 gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes]
 gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes]
 gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes]
 gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes]
 gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139
           G DD + KP   RE++AR+ AI RR   +  +AE               G +++  D  +
Sbjct: 92  GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEATILIGDLKILPDSYE 148

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             +Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR 
Sbjct: 149 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 207

Query: 200 KL 201
           K+
Sbjct: 208 KI 209


>gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
 gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 85/165 (51%), Gaps = 5/165 (3%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R + ++ P+I ++    ++  +   D+G DD + KP    E+LAR+ ++ RR 
Sbjct: 60  LEICRQLRESGAKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRRP 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + +     + G + + +   + +       L ++E  +LEYLM ++G+ V K  I + ++
Sbjct: 120 QDLLGEVLQIGDLTLNTITYEVKRGTTPVSLTQKEFALLEYLMRSQGRVVTKDMILNHVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
             +D  +  N +E +I  LR K+       P  + ++R  GY ++
Sbjct: 180 D-YDADILPNTIEVYIGYLRSKVERPFEGHPRLIHTQRGFGYKME 223


>gi|221068840|ref|ZP_03544945.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220713863|gb|EED69231.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 236

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 4/149 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           +VP+I ++        ++   SG DD + KPI   E+ AR++A+ RR     + +  + G
Sbjct: 73  EVPIIFVTHRSEEADIVEGLASGADDFMIKPIRAGELRARISALLRRAYPLTAQSVLDFG 132

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P R  +     E+QG+   +  RE  +   L  N+G+ +++  +   ++G  +  V+   
Sbjct: 133 PYRFLTTTNGIEMQGKPVEVTHREYTLALTLFQNQGRLLSRDHLREVVWG-HNAEVQSRS 191

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +++H+S+LR  L  + G  P       GY
Sbjct: 192 LDTHVSRLRNLLNLRAG-QPYAISAVYGY 219


>gi|21223763|ref|NP_629542.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256785143|ref|ZP_05523574.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289769037|ref|ZP_06528415.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|6808396|emb|CAB70633.1| probable two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289699236|gb|EFD66665.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 14/159 (8%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A   VP++ ++         +  D+G DD + KP  +  ++ARV A+ RR       A  
Sbjct: 69  AGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR---RGQGAGA 125

Query: 129 GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            P+ V  D R       VF       L  +E  +LE L+   G+ V+K +I   ++  F 
Sbjct: 126 SPVHVHGDLRVDTAARRVFLGEDEATLTAKEFAVLEQLVVRAGQVVSKAEILEHVWD-FA 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + N+VE ++S LR+KLR  L    + + R  GY ++
Sbjct: 185 YDGDPNIVEVYVSALRRKLRAGL----IRTVRGAGYRLE 219


>gi|16273595|ref|NP_439850.1| transcriptional regulatory protein [Haemophilus influenzae Rd KW20]
 gi|145629192|ref|ZP_01784991.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21]
 gi|145633643|ref|ZP_01789370.1| transcriptional regulatory protein [Haemophilus influenzae 3655]
 gi|145639135|ref|ZP_01794742.1| transcriptional regulatory protein [Haemophilus influenzae PittII]
 gi|145641031|ref|ZP_01796612.1| transcriptional regulatory protein [Haemophilus influenzae R3021]
 gi|148827131|ref|YP_001291884.1| transcriptional regulatory protein [Haemophilus influenzae PittGG]
 gi|260581049|ref|ZP_05848871.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|1176110|sp|P45337|QSEB_HAEIN RecName: Full=Transcriptional regulatory protein qseB
 gi|1574562|gb|AAC23354.1| transcriptional regulatory protein (ygiX) [Haemophilus influenzae
           Rd KW20]
 gi|144978695|gb|EDJ88418.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21]
 gi|144985520|gb|EDJ92336.1| transcriptional regulatory protein [Haemophilus influenzae 3655]
 gi|145271697|gb|EDK11607.1| transcriptional regulatory protein [Haemophilus influenzae PittII]
 gi|145274192|gb|EDK14057.1| transcriptional regulatory protein [Haemophilus influenzae 22.4-21]
 gi|148718373|gb|ABQ99500.1| transcriptional regulatory protein [Haemophilus influenzae PittGG]
 gi|260092289|gb|EEW76230.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|309750716|gb|ADO80700.1| Probable two-component regulator,transcriptional regulatory
           component QseB [Haemophilus influenzae R2866]
          Length = 221

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L    G +V
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R    H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A I RR 
Sbjct: 63  LQQWR--SNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E   +++  + R   +  +   L  RE ++LE  M N+ + ++++ I   +  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +DE +    ++ HI  LR+KL
Sbjct: 181 -WDEEISSGALDVHIYNLRQKL 201


>gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 228

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 72/146 (49%), Gaps = 6/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  S+ P+I ++        +   + G DD + KP   +E++AR+ A+ RR  
Sbjct: 65  IDVLKWIRKDSETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYN 124

Query: 121 VSNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             N   +    R  +   +  +    + E+  +P +E  +L YL +N  K   + Q+   
Sbjct: 125 AENVDKDVLKFRGLTIDINSYIVIYKENEI-KMPPKEFELLYYLASNTNKVFTREQLLCE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202
           ++G +D   +   V+ HI +LR+KL+
Sbjct: 184 VWG-YDYPGDSRTVDVHIKRLREKLQ 208


>gi|323486881|ref|ZP_08092198.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum
           WAL-14163]
 gi|323690896|ref|ZP_08105189.1| response regulator [Clostridium symbiosum WAL-14673]
 gi|323399813|gb|EGA92194.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum
           WAL-14163]
 gi|323505063|gb|EGB20832.1| response regulator [Clostridium symbiosum WAL-14673]
          Length = 231

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 14/210 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DD+ +V+   I L G+    ++ ++  E  E LQ+ +   V+ +   ++  G   
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGFEALELLQNHS---VNLMIIDVMMPGLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +     +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 61  IRTTLKVRETSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 120

Query: 119 -LKVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            L   N +A     + G + +  + ++  V GE+  L   E  IL  L+ N GK  +  Q
Sbjct: 121 QLGNMNTQAGGHIFKCGGLLINDENKEVTVDGELIKLTPIEYNILLLLVRNAGKVFSIDQ 180

Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKL 201
           I+  I+   +EA+  +N V  HI  +R+K+
Sbjct: 181 IYEEIWN--EEAIGADNTVAVHIRHIREKI 208


>gi|282900388|ref|ZP_06308338.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194701|gb|EFA69648.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Cylindrospermopsis raciborskii CS-505]
          Length = 268

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---- 123
           R    +P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  V +    
Sbjct: 100 RQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSSVDSYTIT 159

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            +   G + +  + +    QG +  L  +E ++L+Y M N  + +   QI   ++   ++
Sbjct: 160 GKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQHLWK-GEK 218

Query: 184 AVEENVVESHISKLRKKL 201
             E NV+ + I  LR+K+
Sbjct: 219 PPESNVIAALIRLLRRKI 236


>gi|302873802|ref|YP_003842435.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689957|ref|ZP_07632403.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576659|gb|ADL50671.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 223

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 4/158 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I IS        +   + G DD + KP     ++A+V A+ RR      + 
Sbjct: 67  IRKISSVPIIFISSMSDNMNVIMAVNMGGDDFIAKPFDLNILVAKVQALLRRTYSFGGKM 126

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   + +  +    E +     L + E +IL+ L  N GK +++  I + ++   D 
Sbjct: 127 DVIEHKGVVLNLNSAMLEYKNNKLELTKNEFKILQILFENIGKAISRDDIMTRLWE-SDS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++N +  ++++LRKKL +    D V +K+ +GY ++
Sbjct: 186 YIDDNTLTVNVTRLRKKLSDVGLSDFVKTKKGIGYMVE 223


>gi|238909978|ref|ZP_04653815.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 219

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLVEDDTLIGDGIKTGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R      Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+    KLG + + +   +GY++
Sbjct: 181 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 216


>gi|228910661|ref|ZP_04074472.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228848929|gb|EEM93772.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    K S  
Sbjct: 66  RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125

Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 PLENEDDMLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +G ++ A ++  V SHI  LR KL  K  +
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|209809498|ref|YP_002265036.1| transcriptional regulator, response regulator [Aliivibrio
           salmonicida LFI1238]
 gi|208011060|emb|CAQ81477.1| transcriptional regulator, response regulator [Aliivibrio
           salmonicida LFI1238]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 7/165 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++   IRA  +  P++ +S   S+   ++   +G DD + KP    E+LAR+  I RR 
Sbjct: 60  LKILSAIRATGNNTPVLILSALDSVDQRVEGLIAGSDDYLTKPFALAELLARINIILRRN 119

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++  +N  +   + +    +   +      L  +E  +L YL  +  + V++ ++F A
Sbjct: 120 RPIESFSNEIKINNLLINLRSQKVTINNNAISLQNKEFILLRYLAEHVNEVVSRMRLFEA 179

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   FD   + NV++ HI+KLRKKL      + +++ R  GY I
Sbjct: 180 AWDYHFDP--KTNVIDVHIAKLRKKLEQGGAINLIETVRGAGYVI 222


>gi|160894215|ref|ZP_02074993.1| hypothetical protein CLOL250_01769 [Clostridium sp. L2-50]
 gi|156864248|gb|EDO57679.1| hypothetical protein CLOL250_01769 [Clostridium sp. L2-50]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 5/166 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R +R +    +I ++        +  +++G DD + KP     +L ++ A +RR  
Sbjct: 61  LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +  +G I   +      ++     L + E ++L + + N  K ++KTQI   ++
Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKNREISLTKTELKMLTFFLQNPKKILSKTQILENVF 180

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            L  + V+EN +  +I +LR+K+  N      + + R LGY   WN
Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPAASVYIKNIRGLGYI--WN 224


>gi|74317305|ref|YP_315045.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056800|gb|AAZ97240.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 232

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 7/205 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D      G++G+      +S+  + WL SS R D+  ++  L   GE  
Sbjct: 6   ILVVDDDQELLDMVCRYLGENGLDAHAAADSVHMDAWLASS-RPDLIVLDVML--PGEDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + +++   VP++ +S   S    +   + G DD + KP H RE+LAR+ A  RR  
Sbjct: 63  LSVVKRLKSRLDVPVLMLSARSSDVDRILGLEMGADDYLTKPFHPRELLARIHARLRRSP 122

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E G  R+    RD    G+   L   +  +L  LM +  + + +TQ+   + 
Sbjct: 123 APRQEDALEAGSFRLDFVRRDAYKHGQPLALSTADFSLLSLLMRHSHRVLDRTQLVD-LA 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
              +       ++  +++LR+K+ +
Sbjct: 182 SAMERMPFNRSIDVRVARLRRKIED 206


>gi|16125553|ref|NP_420117.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|13422643|gb|AAK23285.1| DNA-binding response regulator [Caulobacter crescentus CB15]
          Length = 221

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 8/147 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P++ +S        ++  ++G DD + KP    E+LAR   + RR          G  R+
Sbjct: 74  PVLILSARGDWTEKVEGIEAGADDYLAKPFEMGELLARARGLVRR-AAGRTSPVIGAGRL 132

Query: 134 FSDGR--DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
             D R     + G    L   E R+L+ L  N G+ V+  ++   +YG+ D A + N +E
Sbjct: 133 ALDTRRMSATLDGAPIRLSPLEFRLLDCLAHNPGRAVSAGELAEQLYGVADTA-DTNAIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + +++LR+    K+G D ++++R  GY
Sbjct: 192 ALVARLRR----KIGADVIETRRGFGY 214


>gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 235

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 11/147 (7%)

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +RA     P + +S   S++  ++    G DD V KP    E++AR+A + RR   
Sbjct: 69  LLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRRSGF 128

Query: 122 SNNRAETGPIR-VFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                E  P R VFSD   D E       GE+  L   E  +L Y M N G  ++K +I 
Sbjct: 129 GVGDEE--PTRIVFSDLELDDETHEVFKNGELVSLSPTEFTLLRYFMVNAGTVLSKPRIL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++  +D   + NVVES++S LR+K+
Sbjct: 187 DHVWS-YDFGGDVNVVESYVSYLRRKV 212


>gi|319744078|gb|EFV96455.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 223

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 104/210 (49%), Gaps = 13/210 (6%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L ++GY  +   +G   E  N L+ EE      +  ++ I   ++   + + EL     A
Sbjct: 21  LTQEGYQFITASNGQ--EALNCLDTEE-----VQLIITDIMMPMMDGYQLIQELRS---A 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128
              VP+I ++    ++     F  G DD + KP+  +E+  R+ A+ RR   V+ ++   
Sbjct: 71  AYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLRRANIVAQHQLII 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G   +  D    E   +    P++E R+L +L++   +   + ++  +I+G+ D  ++E 
Sbjct: 131 GNTCLNEDELSLEYFEQEIIFPQKEFRVLFHLLSYPNRIFTRLELLDSIWGM-DTDLDER 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VV++ I+K+R+K+ +   F  +++ R +GY
Sbjct: 190 VVDACINKIRRKVEHLPDF-KIETVRGVGY 218


>gi|313679064|ref|YP_004056803.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313151779|gb|ADR35630.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 8/126 (6%)

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG 144
            T +   + G DD + KP    E  ARV A+ RR    + R   GP+ + S+G    ++G
Sbjct: 84  HTKVYCLEIGADDYMTKPFSVLEFTARVQALLRR-SYGSPRIRVGPLELDSEGYRATLEG 142

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRN 203
               L + E  +L  L +  G+  +++++  A++GL FD    + VV+ +I+ LRK    
Sbjct: 143 RELKLSKTEFALLRTLASAPGRVWSRSELLEAVWGLTFDGT--DRVVDVYINMLRK---- 196

Query: 204 KLGFDP 209
           KLG DP
Sbjct: 197 KLGDDP 202


>gi|293603146|ref|ZP_06685580.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818540|gb|EFF77587.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 232

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           VP+I ++   S Q  +D  ++G DD + KP   +E++AR+ A+ RR   +++++  + G 
Sbjct: 77  VPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRAPQLTDDVIDVGG 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENV 189
           +++           +   +   E R+L + M +  +  +++Q+   ++G  D   VEE  
Sbjct: 137 LKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVWG--DHVFVEERT 194

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+ HI +LRK L        V++ R  GY
Sbjct: 195 VDVHIRRLRKALEPSGHDAHVETVRGSGY 223


>gi|228941999|ref|ZP_04104542.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974930|ref|ZP_04135491.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981523|ref|ZP_04141820.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228778202|gb|EEM26472.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228784783|gb|EEM32801.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817668|gb|EEM63750.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942601|gb|AEA18497.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G +D V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGANDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL Y M N+G  + + Q+ S
Sbjct: 124 KQLLENEDDTLSIHDIHVHFPSRTVTVNRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|229134079|ref|ZP_04262899.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228649414|gb|EEL05429.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ N   
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLNADI 128

Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            T     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|221234299|ref|YP_002516735.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|220963471|gb|ACL94827.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 222

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 8/147 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P++ +S        ++  ++G DD + KP    E+LAR   + RR          G  R+
Sbjct: 75  PVLILSARGDWTEKVEGIEAGADDYLAKPFEMGELLARARGLVRR-AAGRTSPVIGAGRL 133

Query: 134 FSDGR--DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
             D R     + G    L   E R+L+ L  N G+ V+  ++   +YG+ D A + N +E
Sbjct: 134 ALDTRRMSATLDGAPIRLSPLEFRLLDCLAHNPGRAVSAGELAEQLYGVADTA-DTNAIE 192

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + +++LR+    K+G D ++++R  GY
Sbjct: 193 ALVARLRR----KIGADVIETRRGFGY 215


>gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
 gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
          Length = 230

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 25/203 (12%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEKVLELPR 65
           R+L  +GY     +DG            E L+  A  R D++ ++  +       L++ R
Sbjct: 18  RSLTFNGYTVELAEDGA-----------EALEKIAKDRPDLAILDVMM--PKLDGLDVCR 64

Query: 66  IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
            +R+    +P++ ++   S+   +   D+G DD + KP    E+LARV ++ RR  +   
Sbjct: 65  RLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLRRSALEVP 124

Query: 125 RAETGPIRVFSD-GRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E      F D   DPE + EVF       L R E  +LE LM+N  + +++T I   +
Sbjct: 125 AMEDAATLQFEDLSLDPETR-EVFRGERRISLTRTEFALLELLMSNPRRVLSRTAILEDV 183

Query: 178 YGLFDEAVEENVVESHISKLRKK 200
           +G +D     N +E +I  LR+K
Sbjct: 184 WG-YDFPTSGNALEVYIGYLRRK 205


>gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 233

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRA 126
           +S+VP+I ++        +     G DD V KP   RE++ARV A+ RR    K  +   
Sbjct: 75  NSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQDFKDKDKIL 134

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           E G + V +      V+     LP +E  +L  L+ N  +   + +I   I+G F  A  
Sbjct: 135 EKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKIWG-FSFAGG 193

Query: 187 ENVVESHISKLRKKLRNKLGFD 208
              V+ H+ ++RKKL  + GFD
Sbjct: 194 TRTVDEHVKRIRKKLEPESGFD 215


>gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++   + + EE L+ +       I   ++  G    E
Sbjct: 5   LVVDDEKLIVKGIKFSLEQDEMQVDC--AYDGEEALEKAKENQYDIILLDVMLPGLTGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQAIREFSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAILRRSAHH 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + S    E   +++  + R   + G+   L  +E  +LE L+ +  K  ++  + +
Sbjct: 123 DVKEEESAKVVECRGLKIDCESRRVHIHGKEVNLTAKEFDLLELLVFHPNKVYSREDLLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            ++G +D   +   V+ HI +LR+K+    G  D V +K  +GY
Sbjct: 183 TVWG-YDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGY 225


>gi|167561188|ref|ZP_02354104.1| Response regulator [Burkholderia oklahomensis EO147]
          Length = 240

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 10/170 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L R +R HS   +I ++        +   ++  DD + KPI  RE+LARV A+ RR +
Sbjct: 65  ISLARELREHSTAGIIFVTQRDGDLDRVLGLETAGDDYITKPIRLRELLARVRALLRRQR 124

Query: 121 VSNNRAETGPIRVFS----DGRDPEVQ---GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    A    +  F     D R  E+    G V PL  RE  +L  L+  RG  + +  +
Sbjct: 125 LYREIAPVDTVLTFDRWLIDLRRRELALSGGAVLPLTPREFDLLAALVMVRGTTLTREYL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221
              +    + A +   V++ I++LR+K+ +  G    P+ +   +GY +D
Sbjct: 185 LEVVSK-RERATDSRTVDTLIARLRRKMSDDAGGMRCPIGTVAGIGYRLD 233


>gi|297582974|ref|YP_003698754.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141431|gb|ADH98188.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 228

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 7/166 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +R   + VP++ ++        +   D+G DD + KP   +E+LARV ++ RR 
Sbjct: 60  LDICRDVRQDDRLVPILILTGKGETDDIVRGLDAGADDYLVKPFEPKELLARVKSLLRRS 119

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S      G   +  +  +  + GE+     RE R+L  L+  +G+ +++ QI   
Sbjct: 120 FPYAGSTTFFTAGNTSLSPEQHEWRINGELIAAAPREIRVLSLLVHCKGQTLSREQILDP 179

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  FD   +   V+ H+ ++R+KLR       + + R +GY I+
Sbjct: 180 VWGKDFDG--DPRTVDVHMKRIREKLRTFESDWSLVTVRGVGYRIE 223


>gi|163816389|ref|ZP_02207755.1| hypothetical protein COPEUT_02578 [Coprococcus eutactus ATCC 27759]
 gi|158448386|gb|EDP25381.1| hypothetical protein COPEUT_02578 [Coprococcus eutactus ATCC 27759]
          Length = 239

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 12/170 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE VLE    IR    +P+I ++   SL   +    SG DD + KP   RE+LAR+    
Sbjct: 74  GEAVLEE---IRKKGNLPVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQL 130

Query: 117 RRLKVSNNRAETGPIRVFSDGRDP---EVQGEVFP-LPRRERRILEYLMANRGKRVAKTQ 172
           R  +    +      R     +      + G++ P + R+E  ILE L+ N  +  +K  
Sbjct: 131 RHTEEKEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKED 190

Query: 173 IFSAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           IF   +   DE    E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 191 IFEYAW---DEPYMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 237


>gi|160894855|ref|ZP_02075629.1| hypothetical protein CLOL250_02405 [Clostridium sp. L2-50]
 gi|156863286|gb|EDO56717.1| hypothetical protein CLOL250_02405 [Clostridium sp. L2-50]
          Length = 239

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 12/170 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE VLE    IR    +P+I ++   SL   +    SG DD + KP   RE+LAR+    
Sbjct: 74  GEAVLEE---IRKKGNLPVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQL 130

Query: 117 RRLKVSNNRAETGPIRVFSDGRDP---EVQGEVFP-LPRRERRILEYLMANRGKRVAKTQ 172
           R  +    +      R     +      + G++ P + R+E  ILE L+ N  +  +K  
Sbjct: 131 RHTEEKEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKED 190

Query: 173 IFSAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           IF   +   DE    E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 191 IFEYAW---DEPYMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 237


>gi|329925047|ref|ZP_08279991.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|328940166|gb|EGG36498.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 15/214 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L  +GY  L   DG           EE     A E V      ++   +   +L   IR 
Sbjct: 21  LQTEGYTVLTASDG-----------EEASVLLAEEQVHLAVVDVMMPNKDGYQLCEEIRR 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128
           +  VP+I ++    L      F  G DD + KP   RE+L R+ A+ RR + VS ++   
Sbjct: 70  YYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQMVSADKIRL 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187
               +     + +  G+V  LP +E  +L  L +   +  ++ ++   I+G  FD   ++
Sbjct: 130 NETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWGTDFDG--DD 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V+ HI +LR++  ++ G   + + R +GY ++
Sbjct: 188 RTVDVHIKRLRERFADRRGDFRIRTIRGVGYKLE 221


>gi|324112281|gb|EGC06259.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
          Length = 223

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQFLESGHYSLVVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLARIRQKKHTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N + E+    G +++    R   +  E   L  +E  +L  LM   G  V +  +++ I
Sbjct: 119 HNTQGESELNIGNLKLIMGRRQVWMGNEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  +D     N +E HI      LR+K+G + + + R  GY +
Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKIGKERIRTVRGFGYML 216


>gi|322373251|ref|ZP_08047787.1| DNA-binding response regulator YycF [Streptococcus sp. C150]
 gi|321278293|gb|EFX55362.1| DNA-binding response regulator YycF [Streptococcus sp. C150]
          Length = 228

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 14/204 (6%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++    LF  +   ++ ++  E E   QS    D+  ++  L GKG +  E+ 
Sbjct: 7   IEDNEDIQNILFNLFSGEHDIIQAYSGTEGELLFQSQEI-DLVLLDIMLPGKGGE--EVL 63

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           + IR  S VP+I ++          +   G +D + KP    E+ ARV+   R     + 
Sbjct: 64  KFIRQRSSVPVIMLTALGDKHLISQYLLDGANDYIVKPFDLEEVYARVSVQLREHSKGSG 123

Query: 125 RA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           R     +   I +  D  +   QG+V  L ++E +I   L+ N  K   K  ++  ++  
Sbjct: 124 RPDNIYQVKNITINPDSFEVSCQGKVIRLGKKEFQIFHTLLQNPKKIFTKEDLYETVW-- 181

Query: 181 FDEA---VEENVVESHISKLRKKL 201
             EA     +N + + +S LRKKL
Sbjct: 182 --EAPYLSGDNTLNAQLSNLRKKL 203


>gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ +++R  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR  
Sbjct: 61  IEVCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSN 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +N  E   ++V  D R   V G+   L  +E  +LE LMA+  K  ++ ++ 
Sbjct: 121 RKQAPAKPSNVMEINGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218
           + I+G      +   V+ H+ +LR+K+    G +PV   +K  +GY
Sbjct: 181 NTIWG-DSYPGDARTVDVHVRRLREKIEANPG-EPVYIHTKWGVGY 224


>gi|268319166|ref|YP_003292822.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|262397541|emb|CAX66555.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 221

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            DSG DD + KP   +E+LAR+ +  RR  + + N  E G +   +      V      L
Sbjct: 91  LDSGADDYLTKPFSLKELLARLRSKERRDDQYTPNEVEVGDL-ALNVAEQELVSHNSIRL 149

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +E ++L YLM N GK  + + + + ++   DEA  E+VV  +IS LR+KL++
Sbjct: 150 GSKETQLLNYLMLNEGKEFSTSDLLAHVWKDDDEA-SEDVVWIYISYLRQKLQS 202


>gi|302873161|ref|YP_003841794.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688674|ref|ZP_07631120.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576018|gb|ADL50030.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 230

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 5/145 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+   IR  S  P+I I+        +   +SG DD + KP    E++AR+ A+ RR+ 
Sbjct: 62  IEVCNRIREKSNTPIIMITAKSEDADKILGLNSGADDYIIKPFSPGEVVARIKAVLRRIT 121

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              N      +  P+ +  +    ++ GE   L ++E  +L  L ++  K + +  +   
Sbjct: 122 PVENSTLSVVKYPPMEIDINNYSVKIHGENINLTKKEIEVLWMLTSSPNKVIKRDDLLDN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           I+G+ D   +   V++HI ++R KL
Sbjct: 182 IWGI-DYFGDPRTVDTHIKRIRAKL 205


>gi|268591078|ref|ZP_06125299.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
 gi|291313885|gb|EFE54338.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
          Length = 223

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 82/160 (51%), Gaps = 1/160 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R    +P+I ++   ++   +   + G +D + KP    E+LARV    +  + 
Sbjct: 61  EILKILRTAKNIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKINQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++       +++     D E  G+   L R+E  +L + + +  + + +T I S ++G+ 
Sbjct: 121 ASTTITIADLKIDLTRHDVERAGKKITLTRQEFSLLLFFVLHCDEILPRTLIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + N+++  I +LRKK+ ++     +++ R +GY ++
Sbjct: 180 DFESDTNIIDVAIRRLRKKIDDEFDVKLIETIRGMGYRLN 219


>gi|187777705|ref|ZP_02994178.1| hypothetical protein CLOSPO_01297 [Clostridium sporogenes ATCC
           15579]
 gi|187774633|gb|EDU38435.1| hypothetical protein CLOSPO_01297 [Clostridium sporogenes ATCC
           15579]
          Length = 227

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E   EL R I     +P+I ++    +   +   + G DD + KP + +E+L RV    R
Sbjct: 59  ENGFELCRYINNKYCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIR 118

Query: 118 RLKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R+     ++E         ++V  +GR      E   L  +E  +LE+ + NR    ++ 
Sbjct: 119 RVNKYKEKSEEEFIYINKFVKVNLEGRIVFKDDEEVKLKPQEYELLEFFIKNRNIVFSRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            I + ++G FD   E   V+ H+ +LR KL  +     +D+   +GY
Sbjct: 179 IILNKVWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTVFGIGY 224


>gi|206969897|ref|ZP_03230851.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228955094|ref|ZP_04117109.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229048515|ref|ZP_04194077.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229072320|ref|ZP_04205524.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229082069|ref|ZP_04214555.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229112277|ref|ZP_04241816.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229181134|ref|ZP_04308466.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|206735585|gb|EDZ52753.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228602325|gb|EEK59814.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228671117|gb|EEL26422.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228701238|gb|EEL53738.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228710745|gb|EEL62716.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228722831|gb|EEL74214.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228804604|gb|EEM51208.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    K S  
Sbjct: 66  RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125

Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +G ++ A ++  V SHI  LR KL  K  +
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|328955674|ref|YP_004373007.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328455998|gb|AEB07192.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 241

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 9/158 (5%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           I R    +P+I ++       T+     G DD + KP   RE++AR+A   RR + +  +
Sbjct: 83  IKREQPDLPVIFLTASDDEFNTVTGLTMGADDYIAKPFRPRELIARIATAIRRAQPNARK 142

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              GP+ + ++    E  G    L   E R+L     N G+ V +  I  A++      +
Sbjct: 143 VFFGPLAIDTERAHVERDGCELILSALEYRLLLLFATNPGRLVTREMIREALWDDAGAYI 202

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGY 218
           EEN +  +I    K+LR+++  DP   K     R +GY
Sbjct: 203 EENTLSVYI----KRLRDRIEDDPAHPKMITTVRGMGY 236


>gi|312144339|ref|YP_003995785.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904990|gb|ADQ15431.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 235

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 12/151 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +RA  ++  I I    +    L+     + G DD + KP   RE++AR+ AI+R
Sbjct: 60  MEVCRRLRADEKLKKIAIIMLTAKGEELERILGLEMGADDYMTKPFSPRELIARIKAIFR 119

Query: 118 RLK--------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           R++        + +     G  ++     + + + E   L  +E  +L YL+ N+G+ ++
Sbjct: 120 RMEELKLDKDTIKDEIIIAGDFKIDISRHEVKFKDENISLTLKEFELLRYLILNQGRVLS 179

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           +  +   I+G ++ A +   V+ HI +LRKK
Sbjct: 180 RNLLLEKIWG-YEYAGDTRTVDVHIRRLRKK 209


>gi|312867237|ref|ZP_07727447.1| response regulator protein GraR [Streptococcus parasanguinis F0405]
 gi|311097366|gb|EFQ55600.1| response regulator protein GraR [Streptococcus parasanguinis F0405]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP     +LA+V  + RR        
Sbjct: 67  IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKVQGLLRRSYEFGTDQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E     +     D   +GEV  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 NLLEHRGAILNLKSTDLVYEGEVIKLTKNEFQILRVLFEHAGSIVARDDMMKELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      + +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEAGLSNFIETKKGIGYGL 222


>gi|256545415|ref|ZP_05472777.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
 gi|256398811|gb|EEU12426.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
          Length = 237

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 13/151 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S VP+I ++   S +  ++    G DD V KP   +E++ R+  + RR++ 
Sbjct: 64  DLIKEIRNKSNVPVIMVTAKVSEENIINGLKLGADDYVTKPFSPKELMQRIKTVLRRIEK 123

Query: 122 SN-NRAETGPIRVFSDGR---DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N  RA+   I   +DGR   D E       GE   L + E +I++ L +N  K   + +
Sbjct: 124 YNIPRAD---IIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREE 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           I    +G FD    +  +++HI  +R+K+ +
Sbjct: 181 IIEITFG-FDYDAYDRAIDTHIKNIRQKIED 210


>gi|229147384|ref|ZP_04275733.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296505274|ref|YP_003666974.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228636066|gb|EEK92547.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296326326|gb|ADH09254.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    K S  
Sbjct: 66  RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125

Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +G ++ A ++  V SHI  LR KL  K  +
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|269797462|ref|YP_003311362.1| transcriptional regulator [Veillonella parvula DSM 2008]
 gi|282849136|ref|ZP_06258521.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
 gi|313893989|ref|ZP_07827555.1| sensory transduction protein RegX3 [Veillonella sp. oral taxon 158
           str. F0412]
 gi|269094091|gb|ACZ24082.1| two component transcriptional regulator, winged helix family
           [Veillonella parvula DSM 2008]
 gi|282580840|gb|EFB86238.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
 gi|313441553|gb|EFR59979.1| sensory transduction protein RegX3 [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 12/162 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRR 118
           E+ R IR   +VP++ ++        +     G DD + KP     ++A++ A+   Y+R
Sbjct: 63  EVCRQIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYKR 122

Query: 119 LK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           L     +  N  ++G IR+        V  +   L ++E ++LE+LM NR    +K +++
Sbjct: 123 LTERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           S ++GL D   +   V  HI++LR+++ +    +P DSK  +
Sbjct: 183 SRVWGL-DSYGDYATVAVHINRLREEIED----NPSDSKHII 219


>gi|156740441|ref|YP_001430570.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231769|gb|ABU56552.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 245

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 6/143 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           IR  S VP+I ++        +  F+ G DD + KP    E++ARV AI RR++   +R 
Sbjct: 84  IRERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEGYKHRV 143

Query: 126 ----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G I +        V+G+   L   E  +L +L AN G    +  +F  ++G +
Sbjct: 144 APPIVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFREVWG-Y 202

Query: 182 DEAVEENVVESHISKLRKKLRNK 204
           D   E N+V+  + +LR+K+ ++
Sbjct: 203 DYVGETNLVDVCVRRLREKVESE 225


>gi|219850126|ref|YP_002464559.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219544385|gb|ACL26123.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 245

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 4/140 (2%)

Query: 65  RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA S+ +P+I ++    +Q  +     G DD + KP    E+LARV AI+RR  +S 
Sbjct: 80  RRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGISR 139

Query: 124 --NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   + +  + R+  + G    L   E  +LE  M +  +   +  + S ++G F
Sbjct: 140 PVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG-F 198

Query: 182 DEAVEENVVESHISKLRKKL 201
               + N+VE HIS LR+K+
Sbjct: 199 TYVGDSNIVEVHISNLREKI 218


>gi|27382389|ref|NP_773918.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355560|dbj|BAC52543.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 230

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 76/150 (50%), Gaps = 5/150 (3%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGPI 131
           P + IS    +   +    +G DD + KP    E+LAR+ A+ RR +          G +
Sbjct: 79  PFLIISALGEVDDRVRGLRAGGDDYLVKPFSFVELLARLEALGRRSETIAKETLLRVGDL 138

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190
            +    R+   +G   PL  RE ++LEYL+ N G+ V++  +   ++ L FD +   N++
Sbjct: 139 AIDLIARNASRRGRKIPLLPREFQLLEYLVRNEGRVVSRAMLLQHVWDLHFDPST--NII 196

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++ ++R+K+ +   +  + + R +GY +
Sbjct: 197 DVYVGRVRRKVDDAQAYPLIHTIRGIGYCL 226


>gi|94984238|ref|YP_603602.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554519|gb|ABF44433.1| two component transcriptional regulator PhoB [Deinococcus
           geothermalis DSM 11300]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 20/193 (10%)

Query: 38  LQSSAREDVSAIEAFLIGK----------GEKVLELPRIIRAHSQV---PLIGISDYPSL 84
           L+ SA E V   +  L G           GE  L   R +R   ++   P++ ++   + 
Sbjct: 26  LRVSALESVQGAQETLRGADALVLDWMLPGESGLAYLRRLRGDPELRRLPVLMLTARAAE 85

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQ 143
              ++  +SG DD + KP    E++ARV A+ RR +  +  +   GP+ +     +  + 
Sbjct: 86  AERVEGLESGADDYLTKPFSAAELVARVRALLRRAQPDTPQQLSHGPLSMDLGAAEARLA 145

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           G    L RRE  +L +L  N G+   +T++   ++G  D    E  V+ H+++LR     
Sbjct: 146 GIRLHLTRREFDLLAFLTQNAGRVYTRTELLDRVWG-ADFLGGERTVDQHVTQLRA---- 200

Query: 204 KLGFDPVDSKRFL 216
            LG DP    RFL
Sbjct: 201 HLGDDPA-RPRFL 212


>gi|319793165|ref|YP_004154805.1| two component transcriptional regulator phob, winged helix family
           [Variovorax paradoxus EPS]
 gi|315595628|gb|ADU36694.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus EPS]
          Length = 230

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 7/133 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
            D+G DD + KP   +E+LAR+ A+ RR   +V   R E G + + +       QG    
Sbjct: 96  LDAGADDYITKPFSTQEMLARIRAVLRRRAPEVVTERVEIGELALDTSTHRVTWQGGALK 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGF 207
           +   E ++L YLM +  +  ++ Q+   ++G  D   +EE  V+ H+ +LR+ L      
Sbjct: 156 VGPTEFKLLAYLMQHAERVHSRAQLLDKVWG--DHVYIEERTVDVHVKRLRESLGAAAPM 213

Query: 208 DPVDSKRFLGYSI 220
             V++ R  GY +
Sbjct: 214 --VETVRGAGYRL 224


>gi|313200852|ref|YP_004039510.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|312440168|gb|ADQ84274.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 233

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 12/162 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R IR+ S VP+I +S        +   D+G DD + KP    E+LAR+ A  RR  
Sbjct: 64  IDVIRQIRSWSNVPMIVLSARTQEAQKVSALDAGADDYLTKPFGTAELLARIRAQLRRHS 123

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + N A+      G IRV    R     G +  L   E R+L  L+   G+ V + Q+  
Sbjct: 124 QAGNAAQESVFTMGDIRVDLVNRQVHRGGALVSLTPIEFRLLATLIRYAGRVVTQRQLLK 183

Query: 176 AIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
            ++G        ++   H  ++    LR+KL  DP   +  L
Sbjct: 184 EVWG------PSHIESGHYVRIYMGHLRHKLEADPAQPRYLL 219


>gi|296315110|ref|ZP_06865051.1| DNA-binding response regulator [Neisseria polysaccharea ATCC 43768]
 gi|296838023|gb|EFH21961.1| DNA-binding response regulator [Neisseria polysaccharea ATCC 43768]
          Length = 224

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 105/226 (46%), Gaps = 23/226 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A++ +   A   D G +++   +        ++   D+  ++  L G+ + +  
Sbjct: 4   LLVEDDAMIAEAVSANLKDGGYAVDWVKNGAQVAAAAAAQPYDLMLLDLGLPGR-DGLDV 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L  I  A   VP++ ++    L + L+  D G DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LSEIRAAGCTVPVLIVTARDDLYSRLNGLDGGADDYIVKPFDMAELKARMRAVLRRGGGQ 122

Query: 119 --LKVSNNRAETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             + +SN      P      + ++GR          L  +E  +L+ L+A  G  ++++ 
Sbjct: 123 GQVCLSNGVISLNPATYQAEIIAEGRQ-------VALSNKEFAVLQALLARPGVILSRSD 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   +YG + E VE N V+  I  LRK    KLG + + + R +G+
Sbjct: 176 LEDKVYG-WGEEVESNAVDFLIHALRK----KLGKESIQNVRGVGW 216


>gi|290958605|ref|YP_003489787.1| two component system reponse regulator [Streptomyces scabiei 87.22]
 gi|260648131|emb|CBG71239.1| putative two component system reponse regulator [Streptomyces
           scabiei 87.22]
          Length = 242

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 11/158 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +R  SQVP+I IS        +   + G DD V+KP   RE++AR+ A+ RR++
Sbjct: 58  LDVCKALRDRSQVPIIVISARSDETDRVVGLELGADDYVSKPFGVREVIARIRAVMRRVQ 117

Query: 121 VSNNRAETGP----IRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A  GP     R+  D +   V   G    L  +E  +L +L    G  +++ QI 
Sbjct: 118 PRAADAPAGPDRYGPRLTVDRKAARVHLDGTEVGLAPKEYDLLAFLTEEPGALMSREQIM 177

Query: 175 SAIY--GLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
            A++    F        ++ H++ LR+KL   +  + V
Sbjct: 178 EAVWDANWFGPT---KTLDVHVAALRRKLAGAITIEAV 212


>gi|229187481|ref|ZP_04314623.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228596002|gb|EEK53680.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 202

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 39  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 98

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 99  KAEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 158

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 159 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 201


>gi|254511016|ref|ZP_05123083.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
 gi|221534727|gb|EEE37715.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
          Length = 221

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 16/172 (9%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G   LE  R     S+ P+I ++    +   +   D G DD + KPI   E+ AR  A
Sbjct: 57  GDGRTFLERRR--NQDSRTPVIVLTARSEVADRVGILDLGADDYMVKPIDFSELEARCRA 114

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRV 168
           + RR        E   + +  D     + G      ++  L  RE R+ E L    GK  
Sbjct: 115 VLRR-----RGGEARNLLILGDMSFDSLSGTLKTGEDIIQLRARELRLFETLANAPGKVF 169

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +K  + + +   +DE V EN +E +I +LRK L+N      + + R LGY +
Sbjct: 170 SKASLVNQLVS-YDEDVSENAIEVYIGRLRKHLQNS--SVTITTIRGLGYKL 218


>gi|190575618|ref|YP_001973463.1| putative two-component system response regulator transcriptional
           regulator [Stenotrophomonas maltophilia K279a]
 gi|194366953|ref|YP_002029563.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|254521817|ref|ZP_05133872.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|144897135|emb|CAM73999.1| two-component system regulatory protein [Magnetospirillum
           gryphiswaldense MSR-1]
 gi|190013540|emb|CAQ47175.1| putative two-component system response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194349757|gb|ACF52880.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
 gi|219719408|gb|EED37933.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 61  LELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +E+ R +R  A  Q P++ ++   SL   L  FDSG DD + KP   +E+  R+ A+ RR
Sbjct: 60  IEVCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRR 119

Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            K    R  ETG +    D  +   QG++  L     +IL+ LM      V + ++ + +
Sbjct: 120 GKGVQTRVLETGDLEYNLDTLEVRRQGKLLQLNPTALKILQALMEAAPAVVTRQELETRV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +E  + + +  HI  LR  +        + ++  +GY I
Sbjct: 180 WG--EELPDSDSLRVHIHGLRAVVDKPFEVPLIQTRHGIGYRI 220


>gi|152989694|ref|YP_001350106.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150964852|gb|ABR86877.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 223

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 80/160 (50%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+      +P++ ++    ++  +   + G DD + KP    E+ ARV A+ RR  + 
Sbjct: 63  LARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSMLG 122

Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             + +      +  G R   +  +   L  RE+ +LE ++A  G+ ++K Q+ + ++GL 
Sbjct: 123 GEQVQRCGALAYDLGTRRFSLDEQPLILTSREQAVLEAMIARPGRVMSKEQLAAQVFGL- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE    + +E ++ +LRKKL    G   + + R LGY ++
Sbjct: 182 DEEASADAIEIYVHRLRKKLEG--GAVRIVTFRGLGYLLE 219


>gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G D+ + KP    E+LAR+ A +RR  +
Sbjct: 63  EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATFRRQDI 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +        + D +  +VQ        EV PL +RE  +L  L++N  + + + ++ 
Sbjct: 123 EATKKAPAKASTYRDLK-LDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 182 LQVWK-YDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|299537808|ref|ZP_07051097.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298726787|gb|EFI67373.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 3/144 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S V +I ++    ++  L+ F+ G DD + KP   +E+LAR+ A  +R   
Sbjct: 64  ELAKSIRDVSDVIIIFVTVNHLIEQKLEGFEVGADDYMTKPFIPKELLARIQAHLKRRNP 123

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S  +N      + +  D ++    G++  L  +E+ +L +L+ +  + ++  Q+   ++G
Sbjct: 124 SKKSNIVHIDNLSIHLDEKNVYKDGQLLNLFTKEKLLLFFLIEHANQVISVDQLIDHVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
            +D   +   V  HIS LR+K+ +
Sbjct: 184 -YDGVPDLKTVSVHISTLRRKIED 206


>gi|294508522|ref|YP_003572581.1| response regulator DrrA [Salinibacter ruber M8]
 gi|294344851|emb|CBH25629.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 246

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 8/151 (5%)

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPI 131
           L G+ D+   +  +  F  G DD + KP    E++AR+  + RR   + +   T   G +
Sbjct: 87  LTGLGDH---EHKMRGFQVGADDYLTKPFETEELVARIDVLLRREAEATDETGTFRVGGL 143

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           RV  +  D    GE   L   E ++L YL+  RG+   + QI   ++ L  E VE   ++
Sbjct: 144 RVDLEEDDVSRDGEPVDLTDLEYKLLAYLLRRRGRTATREQILRDVWDLPTE-VETRTID 202

Query: 192 SHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            H++ LR  +  +   + P+ S   +GY ++
Sbjct: 203 RHVNALRDVMDGEAEDEWPIQSVYGIGYKLE 233


>gi|289704826|ref|ZP_06501244.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558442|gb|EFD51715.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 276

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +RA S+  ++ ++        L+    G DD + KP   RE++ARV A+ RR +
Sbjct: 112 IEVCRRVRAFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPR 171

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + +  E  P RV  D        +  V G+V  L R E  +L  L     +  ++ Q+ 
Sbjct: 172 TTVSAPE--PERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLI 229

Query: 175 SAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDP---VDSKRFLGYSI 220
             ++   D A   +E +V+ HI    K LR KL  DP   +D+ R +GY +
Sbjct: 230 DIVW---DPAWVGDERLVDVHI----KNLRRKLDADPARYIDTVRGVGYRM 273


>gi|238020067|ref|ZP_04600493.1| hypothetical protein VEIDISOL_01947 [Veillonella dispar ATCC 17748]
 gi|237863591|gb|EEP64881.1| hypothetical protein VEIDISOL_01947 [Veillonella dispar ATCC 17748]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 12/162 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRR 118
           E+ R IR   +VP++ ++        +     G DD + KP     ++A++ A+   Y+R
Sbjct: 63  EVCRQIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYKR 122

Query: 119 LK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           L     +  N  ++G IR+        V  +   L ++E ++LE+LM NR    +K +++
Sbjct: 123 LTERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           S ++GL D   +   V  HI++LR+++ +    +P DSK  +
Sbjct: 183 SRVWGL-DSYGDYATVAVHINRLREEIED----NPSDSKHII 219


>gi|228923193|ref|ZP_04086483.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836399|gb|EEM81750.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 248

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 78  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 137

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N+      + +F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 138 SAAENDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 195

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 196 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 238


>gi|218551391|ref|YP_002385183.1| DNA-binding transcriptional regulator BasR [Escherichia fergusonii
           ATCC 35469]
 gi|218358933|emb|CAQ91593.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia fergusonii ATCC 35469]
 gi|325499660|gb|EGC97519.1| DNA-binding transcriptional regulator BasR [Escherichia fergusonii
           ECD227]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 9   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQFLESGHYSLVVLDLGLPDE-DGLH 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 68  FLARIRQKKHTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 124

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N + E+    G +++    R   +  E   L  +E  +L  LM   G  V +  +++ I
Sbjct: 125 HNTQGESELNIGNLKLIMGRRQVWMGNEELILTPKEYALLSRLMLKAGSPVHREILYNDI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  +D     N +E HI      LR+K+G + + + R  GY +
Sbjct: 185 YN-WDNEPSTNTLEVHI----HNLRDKIGKERIRTVRGFGYML 222


>gi|15804969|ref|NP_291011.1| DNA-binding response regulator CreB [Escherichia coli O157:H7
           EDL933]
 gi|15834610|ref|NP_313383.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
           Sakai]
 gi|168750963|ref|ZP_02775985.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4113]
 gi|168756818|ref|ZP_02781825.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4401]
 gi|168762752|ref|ZP_02787759.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4501]
 gi|168766682|ref|ZP_02791689.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4486]
 gi|168776622|ref|ZP_02801629.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4196]
 gi|168781690|ref|ZP_02806697.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4076]
 gi|168785043|ref|ZP_02810050.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC869]
 gi|168797973|ref|ZP_02822980.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC508]
 gi|195937669|ref|ZP_03083051.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809655|ref|ZP_03251992.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4206]
 gi|208812237|ref|ZP_03253566.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4045]
 gi|208820456|ref|ZP_03260776.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4042]
 gi|209399995|ref|YP_002273919.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4115]
 gi|217325103|ref|ZP_03441187.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. TW14588]
 gi|254796394|ref|YP_003081231.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226756|ref|ZP_05941037.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255160|ref|ZP_05947693.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli O157:H7 str. FRIK966]
 gi|12519430|gb|AAG59578.1|AE005671_2 catabolic regulation response regulator [Escherichia coli O157:H7
           str. EDL933]
 gi|13364834|dbj|BAB38779.1| catabolic regulation response regulator [Escherichia coli O157:H7
           str. Sakai]
 gi|187768032|gb|EDU31876.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4196]
 gi|188014947|gb|EDU53069.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4113]
 gi|189000768|gb|EDU69754.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4076]
 gi|189356081|gb|EDU74500.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4401]
 gi|189364332|gb|EDU82751.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4486]
 gi|189366953|gb|EDU85369.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4501]
 gi|189374813|gb|EDU93229.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC869]
 gi|189379581|gb|EDU97997.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC508]
 gi|208729456|gb|EDZ79057.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4206]
 gi|208733514|gb|EDZ82201.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4045]
 gi|208740579|gb|EDZ88261.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4042]
 gi|209161395|gb|ACI38828.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4115]
 gi|209748778|gb|ACI72696.1| catabolic regulation response regulator [Escherichia coli]
 gi|209748780|gb|ACI72697.1| catabolic regulation response regulator [Escherichia coli]
 gi|209748782|gb|ACI72698.1| catabolic regulation response regulator [Escherichia coli]
 gi|209748786|gb|ACI72700.1| catabolic regulation response regulator [Escherichia coli]
 gi|217321324|gb|EEC29748.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. TW14588]
 gi|254595794|gb|ACT75155.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli O157:H7 str. TW14359]
 gi|320190484|gb|EFW65134.1| Two-component response regulator CreB [Escherichia coli O157:H7
           str. EC1212]
 gi|320643909|gb|EFX13029.1| DNA-binding response regulator CreB [Escherichia coli O157:H- str.
           493-89]
 gi|320649067|gb|EFX17649.1| DNA-binding response regulator CreB [Escherichia coli O157:H- str.
           H 2687]
 gi|320654584|gb|EFX22596.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320665393|gb|EFX32477.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326345287|gb|EGD69030.1| Two-component response regulator CreB [Escherichia coli O157:H7
           str. 1125]
 gi|326346859|gb|EGD70593.1| Two-component response regulator CreB [Escherichia coli O157:H7
           str. 1044]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+   +
Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDIV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|329113654|ref|ZP_08242430.1| Transcriptional regulatory protein QseB [Acetobacter pomorum DM001]
 gi|326697014|gb|EGE48679.1| Transcriptional regulatory protein QseB [Acetobacter pomorum DM001]
          Length = 223

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 7/129 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPR 151
           G DD + KP    E++AR+AA+ RR      +A  + G I +  + R          L  
Sbjct: 94  GADDYIVKPYDLNELVARIAAVARRYVTPRRQACYQIGEIVIDRENRSVMRNEMELELTA 153

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           RE  I+E L    G+  ++ QI +A+Y L D+ V  N VE  IS+LRKK+ N +    + 
Sbjct: 154 REWAIMELLSRRPGRIYSRHQIDTALYAL-DQDVGSNTVEVFISRLRKKVGNTV----IK 208

Query: 212 SKRFLGYSI 220
           + R  GY +
Sbjct: 209 TVRGRGYCL 217


>gi|322389056|ref|ZP_08062622.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321144234|gb|EFX39646.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP     +LA+V  + RR        
Sbjct: 67  IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKVQGLLRRSYEFGTDQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E     +     D   +GEV  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 NLLEHRGAILNLKSTDLVYEGEVIKLTKNEFQILRVLFEHAGSIVARDDMMKELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      + +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEAGLSNFIETKKGIGYGL 222


>gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
 gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
          Length = 235

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 11/120 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV------SNNRAET----GPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LARV A+ RR K       S+N A+     G ++V+ +  +    
Sbjct: 96  GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  L  +E  +L YLM +    + + ++   I+G +D   E  +V+ HI KLR+K+ +
Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214


>gi|319762980|ref|YP_004126917.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330825060|ref|YP_004388363.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317117541|gb|ADV00030.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329310432|gb|AEB84847.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 226

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 65  RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA  + +P++ ++   +L   +   + G DD + KP    E+ AR+ A+ RR + S 
Sbjct: 64  RRLRARDERIPVLVLTARDTLGERVRSLNEGADDFLAKPFELAELEARLTALVRRARGSE 123

Query: 124 N-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           + R   GP++  +  R   +  E   L  RE  +L+ L+   G+ + + Q    ++G  D
Sbjct: 124 HPRLACGPLQFDTVTRQFTLSAEPLQLSPREHALLKALVQRSGEPLTRQQAMDRVFG-DD 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           E V+ +V++  + +LRK+L    G   + + R LGY ++ +
Sbjct: 183 EDVQPSVIDVLLHRLRKRLEGS-GVR-IHTYRGLGYVLELD 221


>gi|283771249|ref|ZP_06344138.1| two-component system OmpR family KDP operon response regulator KdpE
           [Staphylococcus aureus subsp. aureus H19]
 gi|283459454|gb|EFC06547.1| two-component system OmpR family KDP operon response regulator KdpE
           [Staphylococcus aureus subsp. aureus H19]
          Length = 231

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 17/192 (8%)

Query: 21  DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRAHSQVPLIG 77
           D  ++L+ +N    E   Q+  +  +   +  L+  G   +  L L   IR H+ +P+I 
Sbjct: 19  DVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIV 78

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG 137
           IS     QT +   D+G +D + KP +  E+ AR+  I R   ++ +  ET    VF++G
Sbjct: 79  ISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER---IAKSHQETNI--VFTNG 133

Query: 138 --------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
                   +   +  +   L   E  +LE L  ++GK +    I   IYG  ++  E   
Sbjct: 134 LLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGYVNKT-EMPS 192

Query: 190 VESHISKLRKKL 201
           +  H++ LR+KL
Sbjct: 193 LRVHMTSLRQKL 204


>gi|239627112|ref|ZP_04670143.1| DNA-binding response regulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239517258|gb|EEQ57124.1| DNA-binding response regulator [Clostridiales bacterium 1_7_47FAA]
          Length = 230

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + +L DD +L+ +G    F   G   +   +L+  E + S  + D+  ++  L  G G  
Sbjct: 6   ILLLEDDLSLI-NGLAFAFRKQGFETDIARTLDEAEKIWSDGKYDLLILDVSLPDGSG-- 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             +  +++R  S+VP+I ++        +   D G DD + KP     +++R+ A+ RR+
Sbjct: 63  -FDFCKMVRLVSKVPVIFLTASDEETNIIMGLDMGGDDYITKPFKLGVLVSRINALLRRV 121

Query: 120 K---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           K    +    ++  IRV          G++  L   E ++L   M N    ++K +I   
Sbjct: 122 KDFGTAGTELQSNGIRVLLLQGQVYKNGDLLELTAAEYKLLCLFMQNPNTVLSKEKILDK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
           ++      ++ N +  +I +LR K+ +  G +P  + + R +GY   WN
Sbjct: 182 LWDCEGSYIDNNTLTVYIRRLRMKVEDNPG-EPQMILTVRRMGYK--WN 227


>gi|229062506|ref|ZP_04199819.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716789|gb|EEL68480.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 64/147 (43%), Gaps = 8/147 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    K S  
Sbjct: 66  RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125

Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADISLTHTEFEILVYFMKNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G ++ A ++  V SHI  LR KL  K
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEK 211


>gi|229193098|ref|ZP_04320053.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228590362|gb|EEK48226.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    K S  
Sbjct: 66  RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125

Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +G ++ A ++  V SHI  LR KL  K  +
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|226362561|ref|YP_002780339.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226241046|dbj|BAH51394.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 222

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S +P+I ++     ++ +     G DD + KP    E+ AR+  + RR  
Sbjct: 61  LEVLRQLRQVSDIPVIILTARDDERSVVRGLRGGADDYLVKPARMAELFARIEVVRRRNL 120

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   A     TG +RV  +     V G    L  +E  +LE L+ N G  V++ Q+   
Sbjct: 121 AARGGAPRTVVTGDVRVDLESHTVTVAGTDVDLTSKEFALLEILLENPGAAVSRQQLMDR 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G    AV    ++ HI  LR KL N+ G   V + R  GY
Sbjct: 181 VWGDAFVAVSRT-LDVHIGTLRAKL-NRPGL--VSTIRGFGY 218


>gi|254976600|ref|ZP_05273072.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255093984|ref|ZP_05323462.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255315736|ref|ZP_05357319.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255518397|ref|ZP_05386073.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255651515|ref|ZP_05398417.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|306521334|ref|ZP_07407681.1| two-component system response regulator [Clostridium difficile
           QCD-32g58]
          Length = 224

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S VPLI +S   S    +   ++G DD + KP     ++ ++  I RR+    N +
Sbjct: 67  IRAISNVPLIFLSSRDSDMDLIMGINNGADDYITKPFSIDILVTKINGIIRRVY---NYS 123

Query: 127 ETGPI-----RVFSDGR---DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  I      +F  G+     + + +   L + E +IL  L+ N+ + V++  +   ++
Sbjct: 124 DSNSILYCEDLMFDVGKGIIKHKYKDKSIELTKNEIKILTLLLKNKNRVVSRESLMMTLW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              DE V +N +  ++++LR K++ +LGFD  + +K+ +GY I
Sbjct: 184 D-NDEFVTDNALTVNMNRLRSKVK-ELGFDDFIKTKKGIGYII 224


>gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes]
 gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes]
 gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes]
 gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes]
 gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes]
 gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139
           G DD + KP   RE++AR+ AI RR   +  +AE               G +++  D  +
Sbjct: 92  GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEAAILIGDLKILPDSYE 148

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             +Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR 
Sbjct: 149 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 207

Query: 200 KL 201
           K+
Sbjct: 208 KI 209


>gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S]
          Length = 237

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 16/189 (8%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
            + +G  +LE  E +Q     D+  ++  L G+    +E+ R +R    +P+I ++   S
Sbjct: 32  CAYDGDEALELVEEVQP----DLILLDIMLPGRDG--IEVCREVRKKYDMPIIMVTAKDS 85

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET--------GPIRVF 134
               +   + G DD V KP  +RE++ARV A  RR  +VS++ AE         G + + 
Sbjct: 86  EIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQVSSSTAEEEENSELEIGSLIIH 145

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D      +GE   L  RE  +L YL  + G+ + +  +   ++G +D   +   V+  +
Sbjct: 146 PDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREHLLQTVWG-YDYFGDVRTVDVTV 204

Query: 195 SKLRKKLRN 203
            +LR+K+ +
Sbjct: 205 RRLREKIED 213


>gi|154688064|ref|YP_001423225.1| MrsR2 [Bacillus amyloliquefaciens FZB42]
 gi|154353915|gb|ABS75994.1| MrsR2 [Bacillus amyloliquefaciens FZB42]
          Length = 240

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 14/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR+H+ VP++ ++   +    L  F  G DD + KP +  EI+ARV A  +R+      +
Sbjct: 72  IRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRM---TQLS 128

Query: 127 ETGPIRVFSDGR----DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + P++   D      DP      V G     P +E ++L Y   +  + ++K QI+  +
Sbjct: 129 SSYPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIYKDV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G F     ++ V  H+ +LR+KL
Sbjct: 189 WGEFYGG--DSTVMVHVRRLREKL 210


>gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
 gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
          Length = 233

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 11/156 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR +V
Sbjct: 64  QVCREIRTRSNTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAVLRRYQV 123

Query: 122 SNN----RAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +     +A+ G       I +        V G    +P +E  +L +L ++  +   + 
Sbjct: 124 GSKPETPQADKGKCVEYPGIEINLTNYSVIVDGHTVEMPPKELELLYFLASSPNQVFTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           Q+   I+G ++   +   V+ HI +LR+K+++  G+
Sbjct: 184 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHNGW 218


>gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 232

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 81/157 (51%), Gaps = 6/157 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAET 128
           S +P+I I+        +   + G DD + KP   RE++ARV A+ RR KV   +   + 
Sbjct: 76  SNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRRTKVDYIDKTFKF 135

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G I++     +   +GE   L  +E  +L+ L+ N+G+ + +  +   I+G ++   E  
Sbjct: 136 GNIQIDFQRHNVTKEGEKVELTLKEFELLQVLIKNKGRVMTRDFLLDKIWG-YEYIGETR 194

Query: 189 VVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
            V+ H+  LR+K+ +    +P  +++ R +GY  +++
Sbjct: 195 TVDVHVRHLRQKIEDD-DKNPKYIETIRGIGYRFNYS 230


>gi|329115001|ref|ZP_08243756.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
 gi|326695444|gb|EGE47130.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +R     + +P++ +S       T+   D+G DD + KP     + ARV A+ R
Sbjct: 63  LEVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLR 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           RL  ++       + +       E  G +  L   E R+LE+ M N GK  ++ ++    
Sbjct: 123 RLPPADKTLRFDTLVMDRVSHKVERGGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHA 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +      VE   V+ HI +LR+ L      D + + R  GY++D
Sbjct: 183 WE-RSSFVELRTVDVHIRRLRQTLNEGDEQDIIRTVRARGYALD 225


>gi|314939668|ref|ZP_07846893.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943966|ref|ZP_07850667.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314953851|ref|ZP_07856714.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314993556|ref|ZP_07858912.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314997069|ref|ZP_07862059.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313588840|gb|EFR67685.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313591993|gb|EFR70838.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594186|gb|EFR73031.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597390|gb|EFR76235.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313641077|gb|EFS05657.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
          Length = 239

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A   +P++ I+     +     F  G DD + KPI   E++ RV A+ RR K++ +   T
Sbjct: 87  ARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKINYSSILT 146

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G  ++  D          F LP++E  +L  L++   K   + Q+   I+GL D   EE
Sbjct: 147 IGQTKLELDTYTVVQNQHSFILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL-DTNTEE 205

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++ HI +LR +      F  + + R LGY
Sbjct: 206 RTIDVHIKRLRTRFEKTEDFQII-TVRGLGY 235


>gi|332652632|ref|ZP_08418377.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332517778|gb|EGJ47381.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 222

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 87/162 (53%), Gaps = 7/162 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S +P++ ++   S    L   + G DD + KP +   + AR++AI RR + +
Sbjct: 63  ICRELRKKSDIPILVVTSRNSEVDELMSMNLGADDFIAKPYNLHILEARISAILRRSQNA 122

Query: 123 NNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             R   E   + +         QGE   L + E ++L +L+ ++G  V++  +   ++  
Sbjct: 123 QTRDVIEYKGLSLDLLSGTVSYQGENVLLTKNELKMLAFLIQHQGNIVSRDDLMEYMWS- 181

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             EA +++N +  ++++LRKKL  +LGF + ++++R LGY +
Sbjct: 182 -SEAFIDDNNLSVNMTRLRKKLE-QLGFPETIETRRGLGYQL 221


>gi|326790239|ref|YP_004308060.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541003|gb|ADZ82862.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 236

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 66  IIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           I R H Q   VP++ +S        +   + G DD + KP   RE++ARV AI RR    
Sbjct: 68  IFRNHEQLGCVPVLLVSAKAEEIDKILGLELGADDYITKPFSVRELVARVKAILRRADRN 127

Query: 120 KVSNNRAETGPIRVFSDGR-DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +V   + E     V  D + D E      + E   L  +E  IL+ LM+N+GK + +  I
Sbjct: 128 EVPTKKTEEDHFLVHQDLKLDIESHLLTFKDEPIELTYKEFEILKLLMSNKGKVLTREVI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              ++G +D   E   V+ HI  LR K       + +++ R +GY
Sbjct: 188 LDKVWG-YDYYGETRTVDVHIRYLRAKFEAYGIGEYIETVRGVGY 231


>gi|291535233|emb|CBL08345.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 228

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124
           R    +P++ I+   +L   ++  D G DD + KP H +E+LARV A+ RR   +++S +
Sbjct: 70  RKGISIPILIITAMSTLDNRVEGLDGGADDYLVKPFHIKELLARVRALTRRPANIQLS-S 128

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           + + G +    D R          L  +E  +    M N     ++ Q+   I+G   E 
Sbjct: 129 KLQYGDLTFDKDSRTLSTPVNSILLTSKETELTFVFMQNPETLFSREQLILKIWGSSSE- 187

Query: 185 VEENVVESHISKLRKKLR 202
           VE   V+S+IS LRK+L+
Sbjct: 188 VETGNVDSYISFLRKRLK 205


>gi|268608227|ref|ZP_06141954.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 262

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IR  S +P+I I+     +  +  +D G DD + KP     +  +  A+ +R  K+
Sbjct: 104 ICRSIRKRSDIPVIFITARGREEDMIFGYDLGCDDYIVKPFLLSVLYMKCEAMMKRADKL 163

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S     E G IR+ +      +  +   LP +E  IL YLM ++   + +  I + ++G 
Sbjct: 164 SGQTVLECGAIRLDTRMLCCFINEKEIELPPKEFAILRYLMEHQDWTIDRDTILNRVWG- 222

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +D    + VV+SHI KLRK L
Sbjct: 223 YDYFGSDRVVDSHIKKLRKAL 243


>gi|255657222|ref|ZP_05402631.1| two-component response regulator [Clostridium difficile QCD-23m63]
          Length = 203

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)

Query: 15  YIALFGDDGVSLEGFNSLEFEE-----WLQSSAREDVSAIEAFLIGKGEKVLELPRI--- 66
           Y  L  DD V +   N + F       +   +A++ +  +E+ ++      + LP I   
Sbjct: 2   YNLLVVDDDVDILNINQIYFSNIGFNVYTSETAKDAMDIVESIVLDCIILDISLPDIDGY 61

Query: 67  -----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                I+    +P+I +S+Y   +  +  F +G DD + KP   +E+  R   IY R++ 
Sbjct: 62  KMCNDIKEKVNIPIIFLSNYEHEEEKVRGFLAGGDDYITKPYSLKELELR---IYARMRQ 118

Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N      +  FS      + R     GE   L   E  IL +L  N+ +  +K +I++
Sbjct: 119 YKNITSVPNVLKFSALVINVNSRKVTFDGESIDLTTMEFEILLFLAENKEQVFSKIEIYN 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKK 200
            ++ + D   +++ V+ HI++++KK
Sbjct: 179 QVWKMPDIG-DQHTVQVHIAQMKKK 202


>gi|189463287|ref|ZP_03012072.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136]
 gi|189430017|gb|EDU99001.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136]
          Length = 246

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 80/149 (53%), Gaps = 12/149 (8%)

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R+++A+   +++P+I I+   +   T+  F+ G DD ++KP   RE++ RV A+ RR
Sbjct: 81  KMARMLKANKDTAEIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 140

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +K        G + +    +   + GE   L ++E  IL  L+ N+G+  ++  I
Sbjct: 141 TAGVQIKEEEQLQYKGLV-INIPQKKVTIDGEETSLTKKEFEILLLLLQNQGRVFSREDI 199

Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKL 201
            + ++   DE  V +  ++ +I++LRKK+
Sbjct: 200 LAKVWN--DEVYVLDRTIDVNITRLRKKI 226


>gi|241206329|ref|YP_002977425.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860219|gb|ACS57886.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +RA  +Q  ++ ++   + +  +   D G DD + KP    E  ARV  + RR 
Sbjct: 60  LDVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRRQ 119

Query: 119 LKVSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             + +     G I      R FS G  P        +P RE  +LE L    GK VAK  
Sbjct: 120 AGLRSATVSFGGISFDLNSRTFSAGATP------LDIPARELGLLEILFMRAGKVVAKEA 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I  ++   FD+ +  N +E ++S+LRK+L +  G   V + R +GY +D
Sbjct: 174 IIQSLTA-FDDDISANAIEQYVSRLRKRL-SPHGL-TVKTARGIGYYLD 219


>gi|161614708|ref|YP_001588673.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552644|ref|ZP_02346396.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168233471|ref|ZP_02658529.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237152|ref|ZP_02662210.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168467538|ref|ZP_02701375.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821792|ref|ZP_02833792.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194469497|ref|ZP_03075481.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734514|ref|YP_002114094.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250090|ref|YP_002145965.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|200390714|ref|ZP_03217325.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|238911082|ref|ZP_04654919.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|161364072|gb|ABX67840.1| hypothetical protein SPAB_02459 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194455861|gb|EDX44700.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710016|gb|ACF89237.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630054|gb|EDX48706.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213793|gb|ACH51190.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197289769|gb|EDY29130.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199603159|gb|EDZ01705.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205322771|gb|EDZ10610.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205332481|gb|EDZ19245.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341764|gb|EDZ28528.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 226

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 18  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 67  RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + R +GY +
Sbjct: 185 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|153814418|ref|ZP_01967086.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756]
 gi|317500137|ref|ZP_07958370.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087636|ref|ZP_08336564.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848814|gb|EDK25732.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756]
 gi|316898426|gb|EFV20464.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330399815|gb|EGG79475.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 235

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           S VP+I +S   +L   +     G DD + KP    E++AR+ A  RR   S  +     
Sbjct: 74  SDVPVIILSAKIALADKVSLLKMGADDYITKPFEPEEVIARIQAALRRTATS-KKLSCLN 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY--GLFDEAVEEN 188
           + ++ D R   V G    L   E  +L   + N  K  ++  ++  ++  G +    E N
Sbjct: 133 LELYPDSRKVTVHGIELSLTAHEYDLLYLFIKNPEKVYSREMLYDLVWHGGYYG---ENN 189

Query: 189 VVESHISKLRKKLR 202
            V  H+S LRKK++
Sbjct: 190 TVNVHVSNLRKKIK 203


>gi|74231708|gb|ABA00873.1| NsuR [Streptococcus uberis]
          Length = 232

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 11/170 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR     P+I +S   S    +   + G DD + KP    +++A+VAA  +R +
Sbjct: 61  LQICKQIRESVSSPIIFVSAKDSEDDIVSGLNLGGDDYITKPFSVNQLVAKVAAHLKREE 120

Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              N         E  PI  +   +   + GEV  L  RE  IL+ L + + K   + +I
Sbjct: 121 RHRNSKSNENVVRELLPITFYLQEKIVCINGEVISLTCREYDILDLLASKKNKVYTREEI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  +Y    +A+  ++ E ++ ++R K  +  G +P+ + R +GY   WN
Sbjct: 181 YKRVYDEESDALFRSISE-YVYQIRVKF-SPYGINPIKTIRGIGYK--WN 226


>gi|50119831|ref|YP_048998.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610357|emb|CAG73801.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 226

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 11/204 (5%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF++   L  +E +  +   D +A+   ++      +++ R IR   Q+P+I ++    
Sbjct: 23  EGFSTSRVLTGKEGVNGAISGDYTAMILDVMLPDMSGIDVLRQIRKTQQLPIIMLTARGD 82

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDG 137
               +   + G DD + KP + RE++AR+ A+ RR       K   + A +G + +    
Sbjct: 83  NIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYDDQPSTKRDESVAASGDLVLNPAT 142

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R  E +G+ F L   E  +LE L+ +  + V+K ++     G   EA + + V+ HIS +
Sbjct: 143 RISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELSEKCLGRRREAYDRS-VDVHISNI 201

Query: 198 RKKLRNKLG-FDPVDSKRFLGYSI 220
           R+KL    G    +++ R +GY I
Sbjct: 202 RQKLGALAGNMMTIETVRSVGYRI 225


>gi|326390090|ref|ZP_08211652.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993955|gb|EGD52385.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 12/150 (8%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL + IRA     P+I ++        +   + G DD + KP + RE++ARV A+ RR+
Sbjct: 60  FELLKKIRAMKVNTPVIILTAKSQDVDKILGLELGADDYITKPFNPRELVARVRAVIRRV 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQ 172
              N  +++  +  + + +   +Q        EVF  P RE +IL+ LM NR K V + +
Sbjct: 120 YEFNASSKSINLLEYDEIKLDLIQNKAFVRGKEVFLTP-REFQILKMLMTNRKKVVKREE 178

Query: 173 IFSAIYGLFDEAVEEN-VVESHISKLRKKL 201
           + ++I+G  D  +E+   ++ HI +LR+K+
Sbjct: 179 LIASIWG--DSFIEDTKTLDVHIRRLREKI 206


>gi|323171415|gb|EFZ57062.1| transcriptional regulatory protein creB [Escherichia coli LT-68]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGVPVLDKARQLVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|239929738|ref|ZP_04686691.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438063|ref|ZP_06577453.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340958|gb|EFE67914.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 232

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 30/225 (13%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL +DG+      DG+S LE F S           R D++ ++  +   G   + L R I
Sbjct: 23  ALERDGFAVTAMPDGLSGLEAFRS----------DRPDIALLDVMV--PGLDGVSLCRRI 70

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRA 126
           R  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +N  R 
Sbjct: 71  RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGRANGGRD 130

Query: 127 ET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           E+           G + + + G +    GE   L   E R+L    +  G  +++ ++  
Sbjct: 131 ESAAAAGAGVLAFGELEIDTGGMEVRRAGEPVALTPTEMRLLLEFSSAPGTVLSRDKLLE 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +    +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 191 RVWE-YGWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 230


>gi|225027068|ref|ZP_03716260.1| hypothetical protein EUBHAL_01324 [Eubacterium hallii DSM 3353]
 gi|224955532|gb|EEG36741.1| hypothetical protein EUBHAL_01324 [Eubacterium hallii DSM 3353]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R +R +    +I ++        +  +++G DD + KP     +L ++ A +RR  
Sbjct: 61  LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++
Sbjct: 121 EKTEAGKMISGDIIFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            L  + V+EN +  +I +LR+K+ +     PV  K   G    WN
Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224


>gi|254438411|ref|ZP_05051905.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
 gi|198253857|gb|EDY78171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
          Length = 227

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 14/169 (8%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +++ S    +P+I +S        +   ++G DD V KP    E++ARV    R
Sbjct: 63  IEVCRQLKSRSNTRAIPIIMLSARSEELDKVRGLETGADDYVVKPYAVAELMARVRTQLR 122

Query: 118 RLKVSNNRAETGPIRVFSD-GRDPEVQ----GEV-FPLPRRERRILEYLMANRGKRVAKT 171
           R++ S    + G +  F D   D +      G+V   L   E R+L   M   G+ +++ 
Sbjct: 123 RVRPS----KVGQVLTFDDIALDADTHRVTRGDVELKLGPTEFRLLATFMEKAGRVLSRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+   ++G  D  V+   V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 179 QLLDQVWG-RDVYVDTRTVDVHVGRLRKVLTQHGGDDPVRTVRGAGYAL 226


>gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 235

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 11/120 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV------SNNRAET----GPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LARV A+ RR K       S+N A+     G ++V+ +  +    
Sbjct: 96  GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  L  +E  +L YLM +    + + ++   I+G +D   E  +V+ HI KLR+K+ +
Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214


>gi|116491734|ref|YP_811278.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|116092459|gb|ABJ57613.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
          Length = 224

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E  + +R  +  +P++ ++    ++T    F  G+DD + KPI   E+  R++A+ RR 
Sbjct: 61  VEFAKTVRQLNENIPILFVTARDDIKTKKAGFRVGIDDYLVKPIDLDELKLRISAVLRRA 120

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +S N + E G + + S+     + G   PL  RE  IL  +++  G+  ++ ++    +
Sbjct: 121 NISQNQKIEIGNLLLKSEEISASINGVPIPLTVREFNILFKMLSFAGRAFSRAELLDDFW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                A     V+ +I+KLR+K ++   F+ + +   LGY
Sbjct: 181 DTESNA-SLRAVDVYITKLREKFKSTNAFE-IKTIHGLGY 218


>gi|163942188|ref|YP_001647072.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229013655|ref|ZP_04170784.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229135265|ref|ZP_04264061.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|163864385|gb|ABY45444.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228648190|gb|EEL04229.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228747577|gb|EEL97451.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 235

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++      + +F      E +G+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 LAAESDCLGVNGLLLFPSQHTVEWKGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|307243929|ref|ZP_07526054.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492751|gb|EFM64779.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 227

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 94/203 (46%), Gaps = 18/203 (8%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISD 80
           L+ + +L  +A   V  I+ F   K + ++   ++P        ++IR  S +P+I ++ 
Sbjct: 23  LQAKNYLVDTATNGVECIKKFKESKYDMIILDIKMPNLDGHTTCKMIRNTSNIPIIFLTA 82

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--PIRVFSDGR 138
                  +  F+ G DD + KP     +L R+ A+ RR    N         I +  +  
Sbjct: 83  LSDESDQIKGFELGCDDYITKPFSFNLLLKRLEAVLRRSHNENKNTSLNFEDISLDLNTY 142

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
             +V+  V  L  +E  IL+ L+    + + +  +  +I+G +D   +  +V++HI  +R
Sbjct: 143 TLKVKDAVVELTLKEFNILKELIEKYPQVITRETLLDSIWG-YDYYGDSRIVDAHIKNIR 201

Query: 199 KKLRNKLGFDPVDSKRFLGYSID 221
           K    K+G   + + + +GY+++
Sbjct: 202 K----KIGLPYIKTVKGIGYTLE 220


>gi|237728197|ref|ZP_04558678.1| two-component system response regulator [Citrobacter sp. 30_2]
 gi|226910208|gb|EEH96126.1| two-component system response regulator [Citrobacter sp. 30_2]
          Length = 222

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    +    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLETGHYSLVVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L RI +    +P++ ++   +L+  +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRIRQKKYSLPVLILTARDTLKDRVSGLDVGADDYLVKPFALEELHARIRALLRRHNN 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L VSN     G  +V+ DG+      EV   P +E  +L  LM   G  V +  +
Sbjct: 122 QGESELIVSNLTLNIGRRQVWMDGQ------EVILTP-KEYALLSRLMLKAGSPVHREIL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ IY  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 175 YNDIYS-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 223

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222


>gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6]
 gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae
           TIGR4]
 gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39]
 gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54]
 gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397]
 gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457]
 gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458]
 gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae]
 gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39]
 gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54]
 gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV104]
 gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV200]
 gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458]
 gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457]
 gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397]
 gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 235

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 11/120 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV------SNNRAET----GPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LARV A+ RR K       S+N A+     G ++V+ +  +    
Sbjct: 96  GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  L  +E  +L YLM +    + + ++   I+G +D   E  +V+ HI KLR+K+ +
Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214


>gi|320449570|ref|YP_004201666.1| two-component response regulator [Thermus scotoductus SA-01]
 gi|320149739|gb|ADW21117.1| two-component response regulator [Thermus scotoductus SA-01]
          Length = 227

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 2/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P++ ++   +++  +     G DD + KP H  E+LAR+  +  R K 
Sbjct: 62  EVARRIRATDDTPILVLTAQDAVERKVGLLSDGADDYLVKPFHPAELLARI-QVQLRHKE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + ++   R          L  +E  +L  LM+  G+   + +I   I+G  
Sbjct: 121 GSEVLSVGKLELYPKRRQVFFGETEVRLSPKEFDLLHLLMSRPGRVFPREEIEEKIWG-K 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               + NV++ H++ LR KLR    +  + + R LGY++
Sbjct: 180 PLGRDSNVLDVHVANLRAKLREAGAYGYLRTVRGLGYAV 218


>gi|318042450|ref|ZP_07974406.1| OmpR subfamily protein [Synechococcus sp. CB0101]
          Length = 240

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGE 58
            +L++D   + +  +AL    G  ++  +      W   S   AR D++ ++  L     
Sbjct: 5   ILLVEDEPDLAEALVALLEQQGHVVDHCSD-GLSAWTLLSGDLARYDLALVDWML--PQL 61

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             +EL R +RA    VP++ ++        ++  D+G DD ++KP    E+LARV A+ R
Sbjct: 62  SGVELCRRLRAAGFTVPVLLLTARDGTADRVEGLDAGADDYLSKPFAMEELLARVRALQR 121

Query: 118 RLK-VSNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQ 172
           R       + + G  R+     +  VQ        PL  +E ++L Y M + G  ++ ++
Sbjct: 122 RHPGYREPQLQVGSYRLDPSRSELTVQAATGAVRVPLSAKELQLLTYFMEHSGDILSGSR 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + ++ L  + V  NVV + +  LR+KL +     P+ +    GY  D
Sbjct: 182 LRNQLWDLHQDPV-SNVVAAQVRLLRRKLADHGLPSPITTVPSRGYRFD 229


>gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
 gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
          Length = 236

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139
           G DD + KP   RE++AR+ AI RR   +  +AE               G +++  D  +
Sbjct: 95  GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEATILIGDLKILPDSYE 151

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             +Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR 
Sbjct: 152 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 210

Query: 200 KL 201
           K+
Sbjct: 211 KI 212


>gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 17/203 (8%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYP 82
           V+  G + L    W+    R D   ++  + G  G  V E  R+  A    P++ ++   
Sbjct: 29  VAANGVDGL----WMAQEHRYDAIVLDIMMPGMNGYTVCE--RLRAAEDWTPILMLTAKD 82

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRD 139
                ++  D+G DD ++KP  +  ++AR+ ++ RR   S  R    E G +++    R 
Sbjct: 83  GEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRR--GSRERPVVLEAGDLQLDPAARR 140

Query: 140 PEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAVEENVVESHISKL 197
              +G+V   L  RE  +LE+L+ N G  V+K Q+   ++ G F+   + N+VE ++  L
Sbjct: 141 VR-RGDVEIELTSREFAVLEFLIRNAGDVVSKRQVLDNVWDGDFEG--DPNIVEVYVRHL 197

Query: 198 RKKLRNKLGFDPVDSKRFLGYSI 220
           R K+    G   +++ R  GY +
Sbjct: 198 RNKVDRPFGRASIETLRGAGYRL 220


>gi|238762840|ref|ZP_04623808.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           kristensenii ATCC 33638]
 gi|238698851|gb|EEP91600.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           kristensenii ATCC 33638]
          Length = 173

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 20/159 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I +S   S +  +   D+G DD ++KP    E+LARV    RR    +  +
Sbjct: 15  LRQWSAIPIIVLSARSSEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGGS 71

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  P+  FSD       R     G    L   E R+L  L+AN GK + + Q+ + ++G 
Sbjct: 72  QESPLVNFSDISVDLINRQVTRAGIDLHLTPIEFRLLSALLANTGKVITQRQLLNQVWG- 130

Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216
                  N VE H   LR     LR KL  DP   K  L
Sbjct: 131 ------PNYVE-HSHYLRIYMGHLRQKLETDPTRPKHLL 162


>gi|229826987|ref|ZP_04453056.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC
           49176]
 gi|229788605|gb|EEP24719.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC
           49176]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 6/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKV 121
           L  + +     P++ ++   S++  +   DSG +D + KP    E+LAR+  + R +  +
Sbjct: 63  LKELRKLKKNTPVLFLTARDSIEDRVKGLDSGANDYLVKPFSFEELLARIRVMTREKHNL 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S N      + +          G+   L  +E ++LEYLM N+ K +++ +I + I+  +
Sbjct: 123 SENILTIADLCLNLSSHTVTRDGKEISLTSKEYQLLEYLMYNKEKVLSREKIENHIWN-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           D     NV++ +I  LRKK+ +  GFD   + + R  GY I
Sbjct: 182 DYEGGTNVIDVYIRYLRKKIDD--GFDTKLIHTVRGAGYVI 220


>gi|237737806|ref|ZP_04568287.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
 gi|229419686|gb|EEO34733.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
          Length = 234

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ +IIR  S++P+I ++        ++  D G DD + KP    E+ AR+    R  K 
Sbjct: 65  EVCKIIRKTSEIPIIILTAKDQTLNKIELLDMGADDYITKPFEIEELFARMRVALRNKKE 124

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N      +++  D +      E   L ++E  I+   + N+   +++ +I   I+G
Sbjct: 125 FKTHNTITYENLKLEIDSKILFKGEEKIFLTKKEYNIMYLFLLNKEIVISREKIIEEIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
            +D   ++ +V+ +I+ LRKK+ NK
Sbjct: 185 -YDFEGKDKIVDVYINLLRKKIENK 208


>gi|188996277|ref|YP_001930528.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931344|gb|ACD65974.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 231

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 79/150 (52%), Gaps = 9/150 (6%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE  +++R+  +   +PLI ++   +    +   + G DD V KP   RE+LARV A+ R
Sbjct: 61  LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120

Query: 118 RLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R K      +    + G +++  +  +  ++G+   L   + ++L  L+ ++GK +++  
Sbjct: 121 RSKSLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDY 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           I   ++  +D+ V +  ++ HI KLR+ L+
Sbjct: 181 IIEHVWA-WDKDVYDRTIDVHIKKLRELLK 209


>gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
          Length = 235

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK----------VSNNRAETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LARV A+ RR K          ++++    G ++V+ +  +    
Sbjct: 96  GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  L  +E  +L YLM +    + + ++   I+G +D   E  +V+ HI KLR+K+ +
Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214


>gi|74314598|ref|YP_313017.1| DNA-binding transcriptional regulator BasR [Shigella sonnei Ss046]
 gi|73858075|gb|AAZ90782.1| transcriptional regulatory protein [Shigella sonnei Ss046]
 gi|323164603|gb|EFZ50403.1| transcriptional regulatory protein basR/pmrA [Shigella sonnei 53G]
          Length = 222

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E  QS      S +   L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYTCDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ 
Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IY  +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219


>gi|121605861|ref|YP_983190.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594830|gb|ABM38269.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 230

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 9/168 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R IRA SQ+P+I ++        +   + G DD V KP    E++AR+ AI RR++
Sbjct: 61  MEALRRIRAGSQIPVIMLTARGDNIDRIVGLEMGADDYVPKPCTPGELVARLRAIMRRVR 120

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + N  + G + ++   R     G    L   E  +LE L+   G+ V+K  +
Sbjct: 121 PFVDDSQPAANHLKAGGLELWPGRRQAAWHGAPLELTGTEFSLLEVLVRQAGRLVSKQDL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              ++G    A  E  ++ HIS +R+KL  +    P +   R +GY +
Sbjct: 181 SKHVFG-RPLAPFERRIDVHISSIRQKLGQRPDGQPWILGVRGMGYQL 227


>gi|332976206|gb|EGK13070.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 227

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 5/158 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  +++P+I +S     +  +   + G DD + KP    E++ARV ++ RR         
Sbjct: 69  REQNRIPVILLSARADTRDRVAGLEGGADDYITKPFEPAELVARVKSLLRRAGSGPGMGG 128

Query: 128 TGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             P   IR+   GR      +   L R E  +L  L  + G+  ++ ++   I+G +D  
Sbjct: 129 AEPMPGIRIDHTGRTAFAGEKELRLTRTEFDLLATLAGSPGRAWSREELVERIWG-WDFP 187

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            E   V++H+  LR+KL+   G  P       GY   W
Sbjct: 188 GEVRTVDTHVKNLREKLKQA-GASPDLIDTVWGYGYKW 224


>gi|329938744|ref|ZP_08288140.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302235|gb|EGG46127.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 249

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 20/207 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78
           +L +E W   SA +   A+ A             ++   + +  L R+ R    VP++ +
Sbjct: 41  ALRYEGWRIRSAGDGQGAVRAAREFRPDAVVLDLMLPDMDGLSALGRLRRELPDVPVLFL 100

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134
           +   + +  +    +G DD V KP    +++AR+  + RR   ++ R++     G + + 
Sbjct: 101 TAKDAAEDRIAGLTAGGDDYVTKPFGVEDVVARLRGLIRRSGAADRRSDAVLVVGDLILD 160

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +    G    L   E  +L +LM N  + ++K QI   ++  +D   + NVVE +I
Sbjct: 161 EDSHEVSRGGTDIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 219

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           S LR+K+    G +P + ++R  GY I
Sbjct: 220 SYLRRKI--DAGREPMIHTRRGAGYLI 244


>gi|313885741|ref|ZP_07819490.1| response regulator receiver domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619106|gb|EFR30546.1| response regulator receiver domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 224

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 16/165 (9%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D+  ++  L GK G +VL     IR  S +P+I ++     +T   +  +G DD ++KP 
Sbjct: 46  DLVLLDIMLPGKDGGQVLAE---IRQSSNIPVIMLTAISDKKTVTQYLLNGADDYISKPF 102

Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE------VQGEVFPLPRRERRIL 157
              E+LAR+    R     N +A       F D    E        G+   L  +E  IL
Sbjct: 103 DEAEVLARIQVCLR-----NRQAPVQSQLSFCDLELDEETYQLLCCGQAVQLRLKEYDIL 157

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           + L  +  +   K Q++++I+G  D    +N + +H+S +RKK++
Sbjct: 158 KLLFNHPQQVFTKEQLYASIWGQ-DYLPGDNTLNTHLSNIRKKIK 201


>gi|319764135|ref|YP_004128072.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330823590|ref|YP_004386893.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317118696|gb|ADV01185.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329308962|gb|AEB83377.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 221

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 2/148 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIR 132
           P++ +S    L   +   D+G DD + KP    E+LAR+ A+ RR    +      G + 
Sbjct: 74  PVLVLSAREQLDDRVRALDAGADDYLTKPFELAELLARLRALVRRPAQRDTPVLRHGELA 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V    R    +G+   L  +E   LE L+  +G  +++TQIF  +Y    +A  + VVE 
Sbjct: 134 VDPRSRTARWRGDDLKLTPKEYGCLELLLRRQGAVLSRTQIFEHLYDSSSDA-SDKVVEV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +S LR KL      + + ++R  GY +
Sbjct: 193 IVSTLRTKLAQCGLGELIVTRRGFGYVL 220


>gi|260221284|emb|CBA29695.1| Transcriptional regulatory protein tctD [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 226

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 90/168 (53%), Gaps = 7/168 (4%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+   ++ R IR+  +++P++ ++   SL   ++  + G DD + KP    E+ AR+ A+
Sbjct: 56  GKSGTDILRSIRSRDNRLPVLVLTARDSLTERVNTLNQGADDFLPKPFALAELEARLTAL 115

Query: 116 YRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR + S + R   GP+   +  R   + G +  L  RE  +L+ L+   G+ +++ Q+ 
Sbjct: 116 VRRARGSEHPRFAAGPLNFDTVTRQFTLHGAMLALSPREHALLKALIMRSGEPLSRQQVM 175

Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I+   DE+ V+ + ++  + +LRK+L +  G   + + R LGY ++
Sbjct: 176 DRIFS--DESDVQPSAIDMLLHRLRKRLEHS-GVH-IHTYRGLGYVLE 219


>gi|255017072|ref|ZP_05289198.1| hypothetical protein LmonF_03388 [Listeria monocytogenes FSL
           F2-515]
          Length = 220

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 16/189 (8%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
            + +G  +LE  E +Q     D+  ++  L G+    +E+ R +R    +P+I ++   S
Sbjct: 32  CAYDGDEALELVEEVQP----DLILLDIMLPGRDG--IEVCREVRKKYDMPIIMVTAKDS 85

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET--------GPIRVF 134
               +   + G DD V KP  +RE++ARV A  RR  +VS++ AE         G + + 
Sbjct: 86  EIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQVSSSTAEEEENSELEIGSLIIH 145

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D      +GE   L  RE  +L YL  + G+ + +  +   ++G +D   +   V+  +
Sbjct: 146 PDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREHLLQTVWG-YDYFGDVRTVDVTV 204

Query: 195 SKLRKKLRN 203
            +LR+K+ +
Sbjct: 205 RRLREKIED 213


>gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes
           10403S]
 gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL J2-003]
 gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
 gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
          Length = 236

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139
           G DD + KP   RE++AR+ AI RR   +  +AE               G +++  D  +
Sbjct: 95  GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEAAILIGDLKILPDSYE 151

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             +Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR 
Sbjct: 152 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 210

Query: 200 KL 201
           K+
Sbjct: 211 KI 212


>gi|255656976|ref|ZP_05402385.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
          Length = 226

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S VPLI +S   S    +   ++G DD + KP     ++ ++  I RR+    N +
Sbjct: 67  IRAISNVPLIFLSSRDSDMDLIMGINNGADDYITKPFSIDILVTKINGIIRRVY---NYS 123

Query: 127 ETGPI-----RVFSDGR---DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  I      +F  G+     + + +   L + E +IL  L+ N+ + V++  +   ++
Sbjct: 124 DSNSILYCEDLMFDVGKGIIKHKYKDKSIELTKNEIKILTLLLKNKNRVVSRESLMMTLW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              DE V +N +  ++++LR K++ +LGFD  + +K+ +GY I
Sbjct: 184 D-NDEFVTDNALTVNMNRLRSKVK-ELGFDDFIKTKKGIGYII 224


>gi|224026196|ref|ZP_03644562.1| hypothetical protein BACCOPRO_02952 [Bacteroides coprophilus DSM
           18228]
 gi|224019432|gb|EEF77430.1| hypothetical protein BACCOPRO_02952 [Bacteroides coprophilus DSM
           18228]
          Length = 228

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 7/152 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  + +  +  + +P+I I+   +   T+  F+ G DD ++KP   RE++ RV A+ 
Sbjct: 61  GFKMASMMKKNKDTAGIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVL 120

Query: 117 RRLKVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR      R +       + +    +   + GE   L ++E  IL  L+ N+G+  ++  
Sbjct: 121 RRTANVQTREQEQLQYRDLVIDIPKKKVTISGEEISLTKKEFEILLLLLQNQGRVFSRED 180

Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKLRN 203
           I + ++   DE  V +  ++ +I++LRKK+ N
Sbjct: 181 ILAKVW--HDEVYVLDRTIDVNITRLRKKIGN 210


>gi|158336368|ref|YP_001517542.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306609|gb|ABW28226.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 237

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 80/163 (49%), Gaps = 9/163 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           +R  S VP+I ++    +   +   + G DD + KP   +E+ +R+  I RR+  S++  
Sbjct: 71  LRQESDVPIIMLTALSDVADRITGLEMGADDYMVKPFSPKELESRIRCILRRITKSHSSH 130

Query: 126 ------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + + ++ R      E   L   E  +LE L++  G+ +++ +    ++G
Sbjct: 131 HKSAGVIQVGHLEIDTNKRQVYKDKERIQLTHLEFNLLELLVSRPGEPISRVEFLQKVWG 190

Query: 180 LF-DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              D  ++  VV+ H+S+LR KL+      D + S R +GY+I
Sbjct: 191 YSPDGKIDTRVVDVHMSRLRNKLKEDTEEPDLILSVRGVGYAI 233


>gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
 gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL R2-561]
 gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes
           J0161]
 gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
          Length = 236

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139
           G DD + KP   RE++AR+ AI RR   +  +AE               G +++  D  +
Sbjct: 95  GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEATILIGDLKILPDSYE 151

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             +Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR 
Sbjct: 152 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 210

Query: 200 KL 201
           K+
Sbjct: 211 KI 212


>gi|21283366|ref|NP_646454.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486519|ref|YP_043740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297207594|ref|ZP_06924029.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911675|ref|ZP_07129119.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204806|dbj|BAB95502.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49244962|emb|CAG43423.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296887611|gb|EFH26509.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300887096|gb|EFK82297.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
          Length = 234

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRVFSDGRDPEVQGEVF 147
           G DD + KP   RE++ARV AI RR +      E       G IR+  D  +     E+ 
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRSQFVKEVEEVDDDITIGSIRIRPDYFEVYKHNELL 155

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLG 206
            L  +E  +L YL+  +G+ + +  + + ++  ++ A +  +V+ HIS LR KL  N   
Sbjct: 156 ELTPKEFELLLYLIERQGRVITREHMLNTVWN-YEFAGDSRIVDVHISHLRDKLEDNPKK 214

Query: 207 FDPVDSKRFLGYSID 221
              + + R LGY ++
Sbjct: 215 PQLIKTVRGLGYKLE 229


>gi|311104981|ref|YP_003977834.1| transcriptional regulator QseB 1 [Achromobacter xylosoxidans A8]
 gi|310759670|gb|ADP15119.1| transcriptional regulatory protein QseB 1 [Achromobacter
           xylosoxidans A8]
          Length = 219

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R +RA   + P++  +   ++   +   D+G DD V KP    E+LAR+ A+ RR 
Sbjct: 60  LSLLRDLRARKDRTPVLIATARDAVSDRIAGLDAGADDYVVKPYDVDELLARMRALIRR- 118

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S  RAE       I +        V G    L  RE  +LE L+A  G   ++ Q+  
Sbjct: 119 --SAGRAEPVFEHEGITIDPQSHAAMVDGTPVTLTAREWAVLEPLIARPGMIFSRAQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  + E++  N VE +I  LRK    KLG + + + R +GY I
Sbjct: 177 KLYS-WKESISSNAVEVYIHGLRK----KLGPNLIQNVRGVGYVI 216


>gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 227

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 14/194 (7%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           EE L++    D   +   ++  G   +E+ R +R  S++P+I ++        +   D G
Sbjct: 37  EEGLEAIIEGDFDLVLLDIMLPGLSGMEICRRVRKESEIPIIMLTAKDDTTDKVMGLDLG 96

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF--------SDGRDPEVQGEV 146
             D + KP    E+LAR+  + RR     N+ + G   +          + R+  V  EV
Sbjct: 97  AHDYITKPFAIEELLARMRGVLRR-----NKRDAGMDSILRVKNLVLNQETREVRVNDEV 151

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L ++E  +L YL+ N+G  +++ QI   ++G +D   + N+V+ +I  LR K+ ++  
Sbjct: 152 VELTKKEYNLLLYLLKNKGIVLSREQIIEDVWG-YDYPGDTNIVDVYIRYLRSKIDDECK 210

Query: 207 FDPVDSKRFLGYSI 220
              +++ R +GY I
Sbjct: 211 ETYIETVRGVGYVI 224


>gi|288956869|ref|YP_003447210.1| two-component response regulator [Azospirillum sp. B510]
 gi|288909177|dbj|BAI70666.1| two-component response regulator [Azospirillum sp. B510]
          Length = 248

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 20/173 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +R +++   +P+I ++        +   +SG DD + KP    E++AR+ A+ R
Sbjct: 80  LEVCRQLRRNAKTRDIPIIMLTARGEEGDRVRGLNSGADDYITKPFSPTELVARMRAVLR 139

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         L  ++   +    RV  + RD  +    F       R+L + M + G+  
Sbjct: 140 RASPGMTDEVLTFADVTMDLAAHRVRRNSRDVHLGPTEF-------RLLRHFMQHPGRVF 192

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++G  D  VE   V+ HI +LRK +  +   D + + R  GY++D
Sbjct: 193 SREQLLDLVWG-HDVYVEPRTVDVHIRRLRKAMNEEDELDLIRTVRSAGYALD 244


>gi|238917445|ref|YP_002930962.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872805|gb|ACR72515.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 3/165 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R +R +    +I ++        +  +++G DD + KP     +L ++ A +RR  
Sbjct: 61  LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +  +G I   ++     ++     L + E ++L + + N  + +++TQI   ++
Sbjct: 121 EKTEAGKMISGDIVFIAEEMKVLIKSREISLTKTELKMLTFFLQNPKQILSRTQILENVF 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            L  + V+EN +  +I +LR+K+ +     PV  K   G    WN
Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224


>gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222


>gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 290

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 22/173 (12%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   + 
Sbjct: 89  RRLRAESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGPGSA 148

Query: 125 RAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            AE             G + V ++ R     GE   L   E  +LE L    G+ V + +
Sbjct: 149 TAEIRDLPVGQGVMRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVPRAE 208

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219
           I   ++G     A +  VV+ ++++LR KL      DP     + + R +GYS
Sbjct: 209 ILEQLWGYPPRRAADLRVVDVYVARLRGKLEP----DPRNPELILTVRGIGYS 257


>gi|83814493|ref|YP_446590.1| PhoP3 response regulator [Salinibacter ruber DSM 13855]
 gi|83755887|gb|ABC44000.1| PhoP3 response regulator [Salinibacter ruber DSM 13855]
          Length = 246

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 8/151 (5%)

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPI 131
           L G+ D+   +  +  F  G DD + KP    E++AR+  + RR   + +   T   G +
Sbjct: 87  LTGLGDH---EHKMRGFQVGADDYLTKPFETEELVARIDVLLRREAEATDETGTFRVGGL 143

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           RV  +  D    GE   L   E ++L YL+  RG+   + QI   ++ L  E VE   ++
Sbjct: 144 RVDLEEDDVSRDGEPVDLTDLEYKLLAYLLRRRGRTATREQILRDVWDLPTE-VETRTID 202

Query: 192 SHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            H++ LR  +  +   + P+ S   +GY ++
Sbjct: 203 RHVNALRDVMDGEAEDEWPIQSVYGIGYKLE 233


>gi|332980781|ref|YP_004462222.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698459|gb|AEE95400.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP+I IS        +   + G DD + KP     + A+V A+ RR   L+   
Sbjct: 69  IRKVSKVPIIFISSADDNMNIIMAMNMGGDDFIAKPFDLNVLTAKVGALIRRAYSLQGQV 128

Query: 124 NRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N  E  G +    D       G    L + + RIL+ LM N G+ +++ +I   ++   D
Sbjct: 129 NVIEHNGAVLNLGDAT-LVYHGNKIELTKNDYRILQLLMENAGRVISREEIMQRLWE-SD 186

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +++N +  ++++LRKKL        + +K+ LGY ++
Sbjct: 187 DFIDDNTLTVNMARLRKKLAEAGLEGFIKTKKGLGYMVE 225


>gi|271966272|ref|YP_003340468.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509447|gb|ACZ87725.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 233

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 11/208 (5%)

Query: 22  DGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLI-G 77
           + + L GF    + +  + L++ ARE    I   ++        + R +R     PL+  
Sbjct: 24  EALELNGFAVRTAADGRQALEAVARERPDIIVLDVMMPAPDGFTVARKLREAGDSPLLLF 83

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG 137
           ++   ++   +    +G DD V KP    E++ R+ AI RR++ +  + + G +R     
Sbjct: 84  LTAKDAVSDRIAGLTAGGDDYVTKPFSLEEVVLRLRAIMRRMRPAQEQVDDGVLRYADLE 143

Query: 138 RDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
            D +       G    L   E  +L YLM N  + V+K QI   ++  +D   E  +VES
Sbjct: 144 LDEQAHTVRRAGRAIHLSPTEFSLLRYLMINAERVVSKAQILDRVWD-YDFEGESRIVES 202

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +IS LR+K+ +  G   + + R +GY +
Sbjct: 203 YISYLRRKI-DAEGPPLIHTLRGVGYRL 229


>gi|229094365|ref|ZP_04225439.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228689043|gb|EEL42868.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 202

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 39  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 98

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 99  KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 158

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 159 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 201


>gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KAEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222


>gi|261856400|ref|YP_003263683.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261836869|gb|ACX96636.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 236

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 23/218 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF---LIGKGE 58
            +++DD A ++    A   D     +G++ +E  E  +   R + S ++     L+  GE
Sbjct: 4   ILVVDDDADLRSLLRAYLTD-----QGYHVIEAAEGSELWTRLENSTVDLIILDLMLPGE 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             L L R IRA    P++ ++        +   + G DD + KP H RE+LAR+ +I+RR
Sbjct: 59  DGLALCRTIRARQTTPILMLTARGDEMDRIIGLEMGADDYMPKPFHPRELLARIRSIFRR 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAK 170
            +   N+A+  P  +   G   ++           V PL   E R+L+ L  +    +++
Sbjct: 119 SE-QQNQAQP-PRHLHFSGWTLDLAARHLMSADQVVIPLSTGEFRLLKTLAEHPNTVLSR 176

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
            Q+  A+ G      E + ++  I  +  +LR +LG D
Sbjct: 177 DQLMDALAG-----READPLDRTIDVMMSRLRRRLGDD 209


>gi|110566635|emb|CAL23368.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus amyloliquefaciens]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 14/140 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAE-------TGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+ ARV AI RR  +S+    R E        G +++  +  +   +
Sbjct: 86  GADDYMTKPFSPREVTARVKAILRRADISSLSQGREEEKDGQILIGELKILPEHYEAYFK 145

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            E   L  +E  +L YL  ++G+ + +  + SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 146 SEQLELTPKEFELLLYLGKHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIES 204

Query: 204 KLGFDPVDSK--RFLGYSID 221
                P+  K  R LGY ++
Sbjct: 205 NTK-KPIYIKTIRGLGYKLE 223


>gi|148257911|ref|YP_001242496.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410084|gb|ABQ38590.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 221

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 4/150 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ ++   ++   +   D G DD + KP  +RE+ AR  A+ RR    S+N    GP
Sbjct: 72  RTPVLVLTARSAVDDRIGALDLGADDYLIKPFDYRELEARARALLRRAAGQSDNLLTLGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +   GR   V G+   L RRE  +LE L A  G+ VAK ++   ++  FD+    N V
Sbjct: 132 LVIDRAGRTASVAGQPLDLTRRELTVLEILAARPGRYVAKEELVEQLFS-FDQDPSPNAV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E  I++LR+KL        + ++R LGY +
Sbjct: 191 EQFIARLRRKLAATTV--EIKTERGLGYQL 218


>gi|157163846|ref|YP_001461164.1| DNA-binding response regulator CreB [Escherichia coli HS]
 gi|191167432|ref|ZP_03029247.1| transcriptional regulatory protein CreB [Escherichia coli B7A]
 gi|193070613|ref|ZP_03051551.1| transcriptional regulatory protein CreB [Escherichia coli E110019]
 gi|194439266|ref|ZP_03071345.1| transcriptional regulatory protein CreB [Escherichia coli 101-1]
 gi|209921865|ref|YP_002295949.1| DNA-binding response regulator CreB [Escherichia coli SE11]
 gi|218698234|ref|YP_002405901.1| DNA-binding response regulator CreB [Escherichia coli 55989]
 gi|260871120|ref|YP_003237522.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O111:H- str. 11128]
 gi|293476662|ref|ZP_06665070.1| transcriptional regulatory protein creB [Escherichia coli B088]
 gi|300824440|ref|ZP_07104553.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|301024658|ref|ZP_07188307.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|307313667|ref|ZP_07593286.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309795675|ref|ZP_07690091.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331650886|ref|ZP_08351914.1| transcriptional regulatory protein CreB [Escherichia coli M718]
 gi|331666227|ref|ZP_08367108.1| transcriptional regulatory protein CreB [Escherichia coli TA271]
 gi|331680565|ref|ZP_08381224.1| transcriptional regulatory protein CreB [Escherichia coli H591]
 gi|157069526|gb|ABV08781.1| transcriptional regulatory protein CreB [Escherichia coli HS]
 gi|190902572|gb|EDV62306.1| transcriptional regulatory protein CreB [Escherichia coli B7A]
 gi|192956096|gb|EDV86561.1| transcriptional regulatory protein CreB [Escherichia coli E110019]
 gi|194421748|gb|EDX37756.1| transcriptional regulatory protein CreB [Escherichia coli 101-1]
 gi|209915124|dbj|BAG80198.1| two-component regulator protein [Escherichia coli SE11]
 gi|218354966|emb|CAV02211.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli 55989]
 gi|257767476|dbj|BAI38971.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O111:H- str. 11128]
 gi|291321115|gb|EFE60557.1| transcriptional regulatory protein creB [Escherichia coli B088]
 gi|299880329|gb|EFI88540.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300523082|gb|EFK44151.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|306906490|gb|EFN37003.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|308120799|gb|EFO58061.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|315063700|gb|ADT78027.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli W]
 gi|323176305|gb|EFZ61897.1| transcriptional regulatory protein creB [Escherichia coli 1180]
 gi|323380218|gb|ADX52486.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323945811|gb|EGB41857.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323970848|gb|EGB66100.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|324118351|gb|EGC12245.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|331051340|gb|EGI23389.1| transcriptional regulatory protein CreB [Escherichia coli M718]
 gi|331066438|gb|EGI38315.1| transcriptional regulatory protein CreB [Escherichia coli TA271]
 gi|331072028|gb|EGI43364.1| transcriptional regulatory protein CreB [Escherichia coli H591]
          Length = 229

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQLVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e]
 gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland
           1988]
 gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL
           R2-561]
 gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161]
 gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL
           J2-003]
 gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28]
 gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e]
 gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 237

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 16/189 (8%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
            + +G  +LE  E +Q     D+  ++  L G+    +E+ R +R    +P+I ++   S
Sbjct: 32  CAYDGDEALELVEEVQP----DLILLDIMLPGRDG--IEVCREVRKKYDMPIIMVTAKDS 85

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET--------GPIRVF 134
               +   + G DD V KP  +RE++ARV A  RR  +VS++ AE         G + + 
Sbjct: 86  EIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQVSSSTAEEEENSELEIGSLIIH 145

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D      +GE   L  RE  +L YL  + G+ + +  +   ++G +D   +   V+  +
Sbjct: 146 PDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREHLLQTVWG-YDYFGDVRTVDVTV 204

Query: 195 SKLRKKLRN 203
            +LR+K+ +
Sbjct: 205 RRLREKIED 213


>gi|317501115|ref|ZP_07959321.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090143|ref|ZP_08339031.1| hypothetical protein HMPREF1025_02614 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897502|gb|EFV19567.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330402089|gb|EGG81661.1| hypothetical protein HMPREF1025_02614 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 221

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 12/187 (6%)

Query: 38  LQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           L S  + D+  ++  L G  GE+VL  P I      +P+I +S    +   +     G  
Sbjct: 40  LLSQVKPDLVLLDLMLPGLSGEEVL--PHI----KGIPVIIMSAKVDVDNKVALLLGGAV 93

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRE 153
           D + KP + RE+LAR+ A++ R   S  ++E      I++  D    +++     L R E
Sbjct: 94  DYMTKPFYTRELLARI-AVHLRTFDSFAKSEILTFEEIKLNIDTHIAQIKDVEIKLTRTE 152

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             IL+ LM N+ + V+K+ +   I     +  E + +++HIS LRKKLR   G + +++ 
Sbjct: 153 YAILKLLMQNQTQVVSKSHLLDHISEDTPDCTESS-LKTHISNLRKKLRAVNGKEYIEAV 211

Query: 214 RFLGYSI 220
             +G+ +
Sbjct: 212 WGIGFKM 218


>gi|315644524|ref|ZP_07897656.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280031|gb|EFU43328.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 226

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 84/161 (52%), Gaps = 2/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR ++ +P++ ++     +  +  F+ G DD + KP    E++ RV A+ +R +V
Sbjct: 63  ELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQV 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++    G +++     + +   ++F LP +E  +L  L +  G  + + ++   I+G 
Sbjct: 123 AASQTVNVGKLQMNRRTYEVKTADDIFALPLKEFELLFKLGSYPGSTLTRDRLIEDIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D    E  ++ H+++LR++   +     + + R LGY ++
Sbjct: 182 YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLE 222


>gi|313900334|ref|ZP_07833828.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2]
 gi|312954883|gb|EFR36557.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 17/144 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAIYRRL 119
           +R H  VP++ +S        L+ ++ G DD + KP+         R +L R + ++R+ 
Sbjct: 67  VREHKAVPILIMSARKDRNDQLNGYELGADDYIEKPVDPQILAAKIRAVLQRTSDLHRKE 126

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +S      E    R F DG   E+  + F L       L  L++N GK + K  IF++I
Sbjct: 127 TISCCGVVIERAQHRAFVDGNLMELNAKEFEL-------LTLLVSNAGKTLRKEYIFASI 179

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G+ D   E+  +  HI  LR K+
Sbjct: 180 WGM-DSFSEQQTLTVHIKMLRDKI 202


>gi|312871971|ref|ZP_07732053.1| putative response regulator protein GraR [Lactobacillus iners LEAF
           2062A-h1]
 gi|312873854|ref|ZP_07733897.1| putative response regulator protein GraR [Lactobacillus iners LEAF
           2052A-d]
 gi|311090636|gb|EFQ49037.1| putative response regulator protein GraR [Lactobacillus iners LEAF
           2052A-d]
 gi|311092548|gb|EFQ50910.1| putative response regulator protein GraR [Lactobacillus iners LEAF
           2062A-h1]
          Length = 222

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 6/156 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I I+ +      +     G D+ + KPI     +A++ A+ RR    KV +
Sbjct: 66  IRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYDYKVGS 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G +++       E +  V  L R E  ILE L   + K   +  I +  +   D 
Sbjct: 126 DSIMYGDLKLNLSVAHLEGKNFVLELTRTELLILEILFNFKNKIAKREDIINYCWQ-GDA 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            +++N +  +I++LRKKL+  +G+D  + +K+ +GY
Sbjct: 185 FIDDNTLAVNIARLRKKLKT-VGYDELIQTKKGIGY 219


>gi|283835613|ref|ZP_06355354.1| DNA-binding response regulator TctD [Citrobacter youngae ATCC
           29220]
 gi|291068825|gb|EFE06934.1| DNA-binding response regulator TctD [Citrobacter youngae ATCC
           29220]
          Length = 224

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 19/218 (8%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65
           ++ALV++G    F  D V    F+ L  +  L S    +  A+    I   G   LE+ +
Sbjct: 17  EKALVQNG----FAVDCV----FDGLAADHLLHS----ETYALAVLDINMPGLDGLEVVQ 64

Query: 66  IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
            +R   Q +P++ ++   ++   +   + G DD + KP    E+ AR+ A+ RR      
Sbjct: 65  RLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLAKPFEIEELDARLRALLRRSAGQVQ 124

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             +      F D     +QG+   L  RE+ +L  LM  R + V++ Q+F  ++ L DE 
Sbjct: 125 GIQQLGELAFHDEGYFLLQGQPLALTPREQALLTVLMYRRLRPVSRQQLFEQVFSLSDEV 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             E+ +E +I +LRKKL+   G D  + + R LGY ++
Sbjct: 185 SPES-IELYIHRLRKKLQ---GSDVRIATLRGLGYVLE 218


>gi|228923822|ref|ZP_04087100.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835951|gb|EEM81314.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKTTPIIIVTDNVSSKDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSD- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  GE   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQKEINFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223


>gi|206978377|ref|ZP_03239249.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206743411|gb|EDZ54846.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|324324690|gb|ADY19950.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 8/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTVDLVRGLKIGADDYVTKPFHEEELFARIEAVLRRTNE 121

Query: 122 SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  G I  + + +    V  E   L   E  +L   + +    +++ Q+   I+GL
Sbjct: 122 HKQIQYHGII--WDEAKHSVSVHNEELFLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
            +   E+  V+SHI  LR KLR K+ F P+D+  K   G    W
Sbjct: 180 -NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220


>gi|154687043|ref|YP_001422204.1| PhoP [Bacillus amyloliquefaciens FZB42]
 gi|154352894|gb|ABS74973.1| PhoP [Bacillus amyloliquefaciens FZB42]
          Length = 239

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 14/140 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAE-------TGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+ ARV AI RR  +S+    R E        G +++  +  +   +
Sbjct: 96  GADDYMTKPFSPREVTARVKAILRRADISSLSQGREEEKDGQILIGELKILPEHYEAYFK 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            E   L  +E  +L YL  ++G+ + +  + SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 156 SEQLELTPKEFELLLYLGKHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIES 214

Query: 204 KLGFDPVDSK--RFLGYSID 221
                P+  K  R LGY ++
Sbjct: 215 NTK-KPIYIKTIRGLGYKLE 233


>gi|311103716|ref|YP_003976569.1| phosphate regulon transcriptional regulatory protein PhoB
           [Achromobacter xylosoxidans A8]
 gi|310758405|gb|ADP13854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Achromobacter xylosoxidans A8]
          Length = 232

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           VP+I ++   S Q  +D  ++G DD + KP   +E++AR+ A+ RR   +++++  + G 
Sbjct: 77  VPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRAPQLTDDVIDVGG 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENV 189
           +++           +   +   E R+L + M +  +  +++Q+   ++G  D   VEE  
Sbjct: 137 LKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVWG--DHVFVEERT 194

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+ HI +LRK L        V++ R  GY
Sbjct: 195 VDVHIRRLRKALEPSGHDAHVETVRGSGY 223


>gi|255526832|ref|ZP_05393730.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187597|ref|ZP_06855991.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509453|gb|EET85795.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047554|gb|EFG86994.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 223

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 8/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R  S +P+I ++   S    L   + G DD + KP +   +LAR+  + +R    
Sbjct: 63  ICRELRKTSDIPIIIVTSRDSEVDELMSMNLGADDFITKPYNTDILLARITNLLKRTYGN 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           LK +NN        +         + +   L + E +IL YL+ N+G  V +  +   ++
Sbjct: 123 LK-NNNVLSYKDFNLNLSNAAVNYKDKSLELTKNEVKILSYLINNKGNIVKRDSLMEYLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
              D  V+++ +  +I++LRKKL  ++G  +P++++R LGY
Sbjct: 182 KA-DYFVDDSTLTVNINRLRKKLE-EIGIENPIETRRGLGY 220


>gi|238855833|ref|ZP_04646122.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus jensenii 269-3]
 gi|282933323|ref|ZP_06338706.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|313472807|ref|ZP_07813295.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
 gi|238831496|gb|EEQ23844.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus jensenii 269-3]
 gi|281302508|gb|EFA94727.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|313448883|gb|EFR61222.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
          Length = 237

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R    +P+I ++   +    +   + G DD V KP  +RE+LARV A  RR  
Sbjct: 62  LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELLARVKANLRRRD 121

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +   +A+           G + +  D    E  G+   L  RE  +L YL ++ G+ + +
Sbjct: 122 IVQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +    +G +D   +   V+  + +LR+K+  N +    + ++R +GY +
Sbjct: 182 EHLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYV 231


>gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
 gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
          Length = 237

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCRKLRDKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN   +      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           +F  ++   D  +E +N V  HI KLRKK+
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKI 210


>gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
 gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
          Length = 253

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L  + R D+  ++  L G   +  ++ R+IR  S  P++ ++   S    +  F  G DD
Sbjct: 57  LARTIRPDLIILDLMLPGIDGR--DVCRLIRKWSSAPILVLTARDSEDDIVALFQEGADD 114

Query: 98  VVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
            V KP   RE+ AR+ A+ RR     + N    G + +F D      +G    L  RE  
Sbjct: 115 YVVKPFRTRELFARIDALLRRSAETTAGNVLTAGTLVIFRDEHRVVYRGREVHLAPREFA 174

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +L  L+   G+   + ++   ++G   + V+   V+ HI ++R+ L
Sbjct: 175 LLTALVERAGRVCTRQELLDLVWG--QDVVDLRNVDVHIHRIREAL 218


>gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
 gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
          Length = 239

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE+V    R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++
Sbjct: 64  GERVC---RAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALF 120

Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR  +++       + G + +   G    V+G+   L   E ++L  L  + G+   + +
Sbjct: 121 RRTHLADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRME 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +   + G +D    E  ++SH+    K LR KLG DP   K
Sbjct: 181 LVEKVLG-YDFEGYERTIDSHV----KNLRAKLGDDPKKPK 216


>gi|90413072|ref|ZP_01221069.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum 3TCK]
 gi|90325915|gb|EAS42361.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum 3TCK]
          Length = 224

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 3/148 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           ++P++ ++   + Q  +   ++G DD + KP    E++AR++A+ RR           G 
Sbjct: 72  RLPVLILTARANWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSAGFVKPEMSAGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           IRV    +   V   +  L   E  +LEYLM +  + V+K ++   +Y   D+  + N +
Sbjct: 132 IRVDLLAKQVFVGEALLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE--DQEGDPNTI 189

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E  IS+LRKK       +P+ + R  GY
Sbjct: 190 EVMISRLRKKFITTGQDNPITTIRGQGY 217


>gi|56540563|gb|AAV92735.1| PmrA [Escherichia coli]
          Length = 222

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E  QS      S +   L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ 
Sbjct: 119 -HNNQGESELILGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IY  +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219


>gi|49484821|ref|YP_042045.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|82752206|ref|YP_417947.1| two-component sensor response regulator [Staphylococcus aureus
           RF122]
 gi|253733930|ref|ZP_04868095.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257424102|ref|ZP_05600531.1| two-component sensor response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257426782|ref|ZP_05603184.1| two-component sensor response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429417|ref|ZP_05605804.1| two-component sensor response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257435025|ref|ZP_05611076.1| two-component sensor response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|282906957|ref|ZP_06314805.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282909932|ref|ZP_06317741.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282912181|ref|ZP_06319977.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282912813|ref|ZP_06320605.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M899]
 gi|282922445|ref|ZP_06330135.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus C101]
 gi|283959394|ref|ZP_06376835.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497875|ref|ZP_06665729.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511459|ref|ZP_06670153.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus M809]
 gi|293550064|ref|ZP_06672736.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295429203|ref|ZP_06821825.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297589296|ref|ZP_06947937.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|49242950|emb|CAG41680.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|82657737|emb|CAI82188.1| probable two-component sensor response regulator [Staphylococcus
           aureus RF122]
 gi|253728044|gb|EES96773.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257273120|gb|EEV05222.1| two-component sensor response regulator [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257276413|gb|EEV07864.1| two-component sensor response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279898|gb|EEV10485.1| two-component sensor response regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257285621|gb|EEV15737.1| two-component sensor response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|282314666|gb|EFB45052.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus C101]
 gi|282322913|gb|EFB53232.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M899]
 gi|282323877|gb|EFB54193.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326506|gb|EFB56810.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329856|gb|EFB59377.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|283788986|gb|EFC27813.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919111|gb|EFD96187.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096806|gb|EFE27064.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465417|gb|EFF07949.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus M809]
 gi|295126962|gb|EFG56606.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577807|gb|EFH96520.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|312436955|gb|ADQ76026.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195128|gb|EFU25516.1| probable two-component sensor response regulator [Staphylococcus
           aureus subsp. aureus CGS00]
          Length = 221

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I IS        +     G DD + KP +    +A++ A+ RR   L V+N
Sbjct: 66  IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +        +  D      Q +   L   E +IL+ L  N  K V++T +    +   + 
Sbjct: 126 DSLTVKGCTLILDEAKVVYQEQSIQLSLTELQILKLLFQNEDKYVSRTALIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +++N +  ++++LRKKL N +G  D + +K+ +GY +
Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221


>gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 230

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R      P++ ++    +   +   D+G DD + KP    E+LARV ++ RR 
Sbjct: 60  LEVCRTLRGSGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRA 119

Query: 120 KV----SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 S ++ E     +R+  D RD    G    L R E  +L+ LMAN  + +++  I
Sbjct: 120 AAESVGSGSQGELSFEDLRLNPDTRDVTRGGRPISLTRTEFALLQLLMANSRRVLSRASI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              ++G +D     N +E +I  LR+K  ++     + + R +GY
Sbjct: 180 LEEVWG-YDFPTSGNALEVYIGYLRRKTESEGEPRLIHTVRGVGY 223


>gi|15925069|ref|NP_372603.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927654|ref|NP_375187.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus subsp. aureus N315]
 gi|21283732|ref|NP_646820.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49486873|ref|YP_044094.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650753|ref|YP_186887.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160950|ref|YP_494682.1| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195981|ref|YP_500794.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148268531|ref|YP_001247474.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394595|ref|YP_001317270.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151222196|ref|YP_001333018.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980395|ref|YP_001442654.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|161510292|ref|YP_001575951.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141601|ref|ZP_03566094.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315709|ref|ZP_04838922.1| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731083|ref|ZP_04865248.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253733086|ref|ZP_04867251.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|255006868|ref|ZP_05145469.2| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794530|ref|ZP_05643509.1| response regulator KdpE [Staphylococcus aureus A9781]
 gi|258411240|ref|ZP_05681518.1| two-component system response regulator KdpE [Staphylococcus aureus
           A9763]
 gi|258419757|ref|ZP_05682723.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|258438064|ref|ZP_05689443.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|258441312|ref|ZP_05690797.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus A8115]
 gi|258446995|ref|ZP_05695147.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|258449772|ref|ZP_05697872.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus A6224]
 gi|258453209|ref|ZP_05701200.1| response regulator protein [Staphylococcus aureus A5948]
 gi|258453490|ref|ZP_05701469.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus A5937]
 gi|262049249|ref|ZP_06022124.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus D30]
 gi|262052474|ref|ZP_06024672.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus 930918-3]
 gi|269203716|ref|YP_003282985.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895229|ref|ZP_06303445.1| kdpE protein [Staphylococcus aureus A8117]
 gi|282923069|ref|ZP_06330754.1| kdpE protein [Staphylococcus aureus A9765]
 gi|282929309|ref|ZP_06336880.1| kdpE protein [Staphylococcus aureus A10102]
 gi|284025115|ref|ZP_06379513.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus 132]
 gi|294850565|ref|ZP_06791292.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus A9754]
 gi|295407627|ref|ZP_06817418.1| two component transcriptional regulator [Staphylococcus aureus
           A8819]
 gi|296275710|ref|ZP_06858217.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297210101|ref|ZP_06926494.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297246624|ref|ZP_06930455.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus A8796]
 gi|300910463|ref|ZP_07127915.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304379261|ref|ZP_07362000.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|13701874|dbj|BAB43166.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247852|dbj|BAB58241.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|21205174|dbj|BAB95868.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49245316|emb|CAG43791.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284939|gb|AAW37033.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126924|gb|ABD21438.1| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203539|gb|ABD31349.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741600|gb|ABQ49898.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947047|gb|ABR52983.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374996|dbj|BAF68256.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722530|dbj|BAF78947.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|160369101|gb|ABX30072.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253725210|gb|EES93939.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253728994|gb|EES97723.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|257788502|gb|EEV26842.1| response regulator KdpE [Staphylococcus aureus A9781]
 gi|257839995|gb|EEV64461.1| two-component system response regulator KdpE [Staphylococcus aureus
           A9763]
 gi|257844239|gb|EEV68622.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|257848481|gb|EEV72471.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|257852356|gb|EEV76281.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus A8115]
 gi|257854228|gb|EEV77179.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|257856946|gb|EEV79847.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus A6224]
 gi|257859155|gb|EEV82012.1| response regulator protein [Staphylococcus aureus A5948]
 gi|257864362|gb|EEV87111.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus A5937]
 gi|259159595|gb|EEW44641.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus 930918-3]
 gi|259162614|gb|EEW47181.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus D30]
 gi|262076006|gb|ACY11979.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941680|emb|CBI50087.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282589119|gb|EFB94218.1| kdpE protein [Staphylococcus aureus A10102]
 gi|282593260|gb|EFB98257.1| kdpE protein [Staphylococcus aureus A9765]
 gi|282762419|gb|EFC02563.1| kdpE protein [Staphylococcus aureus A8117]
 gi|285817744|gb|ADC38231.1| DNA-binding response regulator KdpE [Staphylococcus aureus
           04-02981]
 gi|294822585|gb|EFG39027.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus A9754]
 gi|294967525|gb|EFG43563.1| two component transcriptional regulator [Staphylococcus aureus
           A8819]
 gi|296885301|gb|EFH24241.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297176524|gb|EFH35790.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus A8796]
 gi|300888305|gb|EFK83496.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302751961|gb|ADL66138.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342120|gb|EFM08020.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312830431|emb|CBX35273.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128420|gb|EFT84429.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315196988|gb|EFU27330.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140749|gb|EFW32601.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143724|gb|EFW35501.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314765|gb|AEB89178.1| Two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329724028|gb|EGG60552.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727776|gb|EGG64228.1| putative KDP operon transcriptional regulatory protein KdpE
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729288|gb|EGG65696.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 231

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 17/200 (8%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRA 69
           D  I    D  ++L+ +N    +   Q+  +  +   +  L+  G   +  L L   IR 
Sbjct: 11  DHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
           H+ +P+I IS     QT +   D+G +D + KP +  E+ AR+  I R   ++ +  ET 
Sbjct: 71  HTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER---IAKSHQETN 127

Query: 130 PIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              VF++G        +   +  +   L   E  +LE L  ++GK +    I   IYG  
Sbjct: 128 I--VFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGYV 185

Query: 182 DEAVEENVVESHISKLRKKL 201
           ++  E   +  H++ LR+KL
Sbjct: 186 NKT-EMPSLRVHMTSLRQKL 204


>gi|325847791|ref|ZP_08170013.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480809|gb|EGC83862.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 237

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 13/186 (6%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86
           E F + + +E L+    ED+  +   L+       +L + IR  S VP+I ++   S   
Sbjct: 29  EVFQAFDGKEGLEIFESEDIDLVLLDLMIPKISGEDLIKEIRNKSNVPVIMVTAKVSEDD 88

Query: 87  TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDGR---DPEV 142
            ++    G DD V KP   +E++ R+  + RR++  N  RA+   I   +DGR   D E 
Sbjct: 89  IVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIEKYNIPRAD---IIKTTDGRLEMDLEY 145

Query: 143 Q-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
                 GE   L + E +I++ L +N  K   + +I    +G FD    +  +++HI  +
Sbjct: 146 NRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEIIEITFG-FDYDAYDRAIDTHIKNI 204

Query: 198 RKKLRN 203
           R+K+ +
Sbjct: 205 RQKIED 210


>gi|317404463|gb|EFV84875.1| response regulator [Achromobacter xylosoxidans C54]
          Length = 232

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           VP+I ++   S Q  +D  ++G DD + KP   +E++AR+ A+ RR   +++++  + G 
Sbjct: 77  VPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRAPQLTDDVIDVGG 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENV 189
           +++           +   +   E R+L + M +  +  +++Q+   ++G  D   VEE  
Sbjct: 137 LKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVWG--DHVFVEERT 194

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+ HI +LRK L        V++ R  GY
Sbjct: 195 VDVHIRRLRKALEPSGHDAHVETVRGSGY 223


>gi|317472399|ref|ZP_07931724.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900119|gb|EFV22108.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 223

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 84/159 (52%), Gaps = 5/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           + R +R  S VP+I ++   S    L   + G DD ++KP + + ++AR++++ +R K V
Sbjct: 65  ICRAVREKSDVPIIVVTSRDSEMDELMSMNLGADDFISKPYNTQILVARISSLLKRTKHV 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   T    + +        G E   L + E +IL  L+ ++ K V++  +   ++  
Sbjct: 125 KEDWQMTHKGLLINLSNSTACHGKEQIELSKNEVKILSVLVKHKEKIVSRDNLMEELWQ- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            +E V++N +  +I++LRKKL + +G  D + +KR  GY
Sbjct: 184 SNEFVDDNTLTVNINRLRKKL-DSIGLADYIVTKRGQGY 221


>gi|291522704|emb|CBK80997.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 230

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  S+VP+I IS        +   + G DD + KP     ++A++ A+ RR     K+ 
Sbjct: 67  IRKVSRVPVIFISSASDNMNIVMAMNMGGDDFIAKPFDQTVLIAKMQAMLRRTYDFAKIE 126

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +     + V  D      +GE   L R E  IL+ LM N GK V++ ++   ++   
Sbjct: 127 HVLQCREAVLNV--DDHSLTYRGEQIALSRNEYGILKILMENAGKIVSRERLMERLWET- 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  +++N +  ++++LRKKL      D + +K  +GY I
Sbjct: 184 DSFIDDNTLTVNVNRLRKKLEGAGLKDFITTKFGVGYVI 222


>gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 237

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 13/150 (8%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R   ++ P++ ++   +    +     G DD V KP    E+ AR+ A+ RR  
Sbjct: 72  EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTA 131

Query: 121 VSNNRAETGPIRV-FSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 E  P R+ F+D   D E       G+   L   E ++L YLM N  + ++K QI
Sbjct: 132 T----GEQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              ++  +D   ++N+VES+IS LR+K+ N
Sbjct: 188 LDHVWN-YDFRGDDNIVESYISYLRRKVDN 216


>gi|238917433|ref|YP_002930950.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
 gi|238872793|gb|ACR72503.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
          Length = 217

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P++ ++ +   +  +D F +  D  + KP     + AR+ ++ ++  
Sbjct: 59  LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLADGYIEKPFSLPVLKARIDSLIKKNY 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++  
Sbjct: 119 GHLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKD 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 179 SEETPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215


>gi|162295949|gb|ABX83921.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR + +N   
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137

Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   I + +D     +  E    +  L   E +I+ +++    K   + ++ +   
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMNQCM 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 198 N--DSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 241

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 78  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 137

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 138 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 197

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 198 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 240


>gi|89902579|ref|YP_525050.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347316|gb|ABD71519.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 221

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 17/225 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L++D  ++ +  + L   +G +++     E  +    S   D+  ++  L  + G  V
Sbjct: 3   LLLVEDDLMIGESVLDLLRAEGYAVDWVKDGEMADTALDSQTYDLVLLDLGLPRRDGLAV 62

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +RA   + P++  +   ++   ++  D G DD + KP    E+LAR+ A+ RR 
Sbjct: 63  L---RRLRARKDRTPVLVATARDAIAQRVEGLDMGADDYIVKPYELDELLARIRALIRR- 118

Query: 120 KVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +  RAE       + +    R+  + G+   L  RE  ILE L+A  G  +++ Q+  
Sbjct: 119 --AAGRAEPVYEHLGVSINPVTREVLLDGQAVVLSAREWSILELLLARPGMVLSRRQLEE 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y   D+ +  N VE +I  LRKKL  ++    + + R +GY I
Sbjct: 177 KLYSWKDD-LSSNAVEVYIHGLRKKLGPRI----IQNVRGVGYMI 216


>gi|57651500|ref|YP_185598.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           COL]
 gi|57285686|gb|AAW37780.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           COL]
          Length = 227

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 7/159 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+     
Sbjct: 67  RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  T    V    +D   +G +   L + E  ILE L+  + + V++  I +A++  
Sbjct: 127 EEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 185

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DEA V +N +  ++++LRKKL        +++K   GY
Sbjct: 186 -DEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGY 223


>gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 234

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 11/164 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-N 123
           R IR  S VP++ ++        +   + G DD V KP   RE++ARV AI RR +V+ +
Sbjct: 66  REIRRFSTVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAILRRTRVAES 125

Query: 124 NRAETGPIRVFSDG------RDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +R+ T    +  +G         EV+   ++  L  RE  +L +LMA+ G+  ++  +  
Sbjct: 126 SRSRTAADEILREGDITINLTSYEVRKGDKLLELTPREFELLRFLMAHAGQVFSREALLE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
            ++G +D   +   V+  + +LR+KL  N    + + ++R +GY
Sbjct: 186 EVWG-YDYYGDVRTVDVTVRRLREKLEENSARPEYIKTRRGVGY 228


>gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 5/178 (2%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGISDYPSLQTT 87
           +L+ +E L+         I   L+  G   L++ + IR +S    VP+I ++      T 
Sbjct: 30  TLDGKEALEKIKTNSYDLIILDLMLPGASGLDICKEIRENSINKDVPVIVLTALSDEDTK 89

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEV 146
           +  F  G DD V KP   +E+LAR+ A+ RR   V     E   I      +   V G  
Sbjct: 90  VKGFSIGADDYVTKPFSMKELLARIEAVLRRAGYVRKAILEFDGIVYDKRSKSVTVDGNS 149

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
             L + E ++LE+ + +  +  ++ ++   I+G  D       V+ +IS+LRKKL +K
Sbjct: 150 IYLTKTEFQLLEFFLEHPEQLFSREELLEKIWG-HDHNETTRTVDVYISRLRKKLGDK 206


>gi|319942120|ref|ZP_08016438.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804330|gb|EFW01214.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis
           3_1_45B]
          Length = 218

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 12/153 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ET 128
            P++  +   ++   +   DSG DD + KP    E+ AR+ A+ RR   S  RA    E 
Sbjct: 73  TPVLVTTARDTVDDRIKGLDSGADDYLIKPYDLDELSARIRALLRR---SAGRADPVIER 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G +++    R+   +GE   L  +E  +L  L   +G   ++ Q+   +Y  +D  V  N
Sbjct: 130 GELKISPATREVTYKGEPVILSSKEYALLAALAERKGVVWSRAQLEEKLYN-WDNTVGSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E HI  LRKKL +      + + R +GY ++
Sbjct: 189 AIEVHIHHLRKKLADS----AIKTVRGVGYMLE 217


>gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 240

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 5/130 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD V KP    E++AR+ A+ RR   + + + T     + +  D  +    G V  L 
Sbjct: 104 GGDDYVTKPFSLEEVVARIRAVLRRTGSTVDESATLRFHDLELNEDSHEVRRAGRVVELS 163

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
             E ++L YL+ N  + V+K QI   ++  +D   E  +VES+IS LR+K+ +  G   +
Sbjct: 164 PTEFKLLRYLLLNPNRVVSKLQILDHVWD-YDFRGESGIVESYISYLRRKI-DADGPPLI 221

Query: 211 DSKRFLGYSI 220
            +KR +GY +
Sbjct: 222 HTKRGVGYVL 231


>gi|294146553|ref|YP_003559219.1| two-component system response regulator [Sphingobium japonicum
           UT26S]
 gi|292676970|dbj|BAI98487.1| two-component system response regulator [Sphingobium japonicum
           UT26S]
          Length = 236

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 7/166 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RAH  VP+  +S        +   + G DD V KP   RE++AR  AI RR  
Sbjct: 62  LEVCRRLRAHDDVPIFFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVVARSMAILRRAS 121

Query: 121 VSNNRAET-GPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 E  G IR      D E       G    L   E  IL  L+A   +  ++ QI 
Sbjct: 122 ARPPAVEAIGAIRHGRLSLDTESWSAHWGGAEVSLTVTEFTILRTLLAMPSRIFSRDQII 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               G    A+ +  V+SHI  LR+K  +  GFD ++++  +GY +
Sbjct: 182 DRFRGP-GFALTDRTVDSHIRNLRRKFADVGGFDIIETRPGIGYRL 226


>gi|239909225|ref|YP_002955967.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239799092|dbj|BAH78081.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 223

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 13/217 (5%)

Query: 13  DGYIALFGDDGVSLEGF---NSLEFEEWLQSSARED--VSAIEAFLIG-KGEKVLELPRI 66
           D  IA F   G+   GF   ++    + L  +A E   V+ I+  L G  G +V+E  R 
Sbjct: 9   DEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGLQVIEELR- 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--N 124
            R     P+I +S   S++  +   ++G DD ++KP    E+LARV A+ RR   ++   
Sbjct: 68  -RRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRSTSASEPT 126

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183
           R   G + +    R+         L  RE  +LEY M N GK ++KT I   ++   FD 
Sbjct: 127 RLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVWDYHFDP 186

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + N+V+  + +LR K+        + + R +GY +
Sbjct: 187 --QTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVL 221


>gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 233

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 13/150 (8%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R   ++ P++ ++   +    +     G DD V KP    E+ AR+ A+ RR  
Sbjct: 68  EVIRMMREGGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR-- 125

Query: 121 VSNNRAETGPIRV-FSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +   E  P R+ F+D        +    G+   L   E ++L YLM N  + ++K QI
Sbjct: 126 --SASGEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              ++  +D   ++N+VES+IS LR+K+ N
Sbjct: 184 LDHVWN-YDFRGDDNIVESYISYLRRKVDN 212


>gi|150017826|ref|YP_001310080.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904291|gb|ABR35124.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 227

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 6/144 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R  S V +  ++   +L   ++  + G D+ + KP+  RE+ ARV A++RR+  
Sbjct: 62  EVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGC 121

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +  D R  ++ GE   L   E  IL  L +N+GK   +  I    +
Sbjct: 122 KKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIERAF 181

Query: 179 GL-FDEAVEENVVESHISKLRKKL 201
           G+ FD +  +  ++ HI  LRKK+
Sbjct: 182 GMEFDGS--DRSIDVHIKNLRKKI 203


>gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 226

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 18  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 67  RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + R +GY +
Sbjct: 185 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|315293305|gb|EFU52657.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
          Length = 229

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 16/226 (7%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGE-KV 60
           L++D   + D  + +        EGF+   FE  L     AR+ V  +    +G  +   
Sbjct: 8   LVEDEQGIADTLVYMLQQ-----EGFDVEVFERGLPVLDKARQQVPDVMILDVGLPDISG 62

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+
Sbjct: 63  FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFS 175
           K  +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  
Sbjct: 123 KKFSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +++    +  +   V+ HI  LR KLR       P+++ R +GYS+
Sbjct: 182 SVWEDAQDTYDRT-VDPHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|325104913|ref|YP_004274567.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
 gi|324973761|gb|ADY52745.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
          Length = 224

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D   I   L+  G   LE+  I++ H +   +I IS   SL   +     G DD ++KP 
Sbjct: 44  DYDCILLDLMLPGGNGLEVLNILKKHKKNAGVIIISAKDSLDDKIKGLQIGADDYLSKPF 103

Query: 104 HHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
              E+ AR+ ++ RR    N+   T   + V    +  +V     PL R+E  +L +LM 
Sbjct: 104 FLPELAARIHSVIRRRNFENSNIITYEELEVDVISKTVKVNHIPVPLTRKEFDLLLFLMG 163

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEE-NVVESHISKLRKKL 201
           N+ K V KT I   + G   E ++  + + +HI  L++KL
Sbjct: 164 NKNKVVTKTAIAEHLSGDLAEMLDNYDFIYAHIKNLKRKL 203


>gi|255018420|ref|ZP_05290546.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL F2-515]
          Length = 159

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139
           G DD + KP   RE++AR+ AI RR   +  +AE               G +++  D  +
Sbjct: 18  GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEAAILIGDLKILPDSYE 74

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             +Q ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR 
Sbjct: 75  VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 133

Query: 200 KL 201
           K+
Sbjct: 134 KI 135


>gi|256824367|ref|YP_003148327.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687760|gb|ACV05562.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 222

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +RA S+  ++ ++     +  L+    G DD + KP   RE++ARV A+ RR +
Sbjct: 58  IEVCRRVRAFSECYVLMLTARGDERHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPR 117

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + +  E  P RV  D           V G+V  L R E  +L  L     +  ++ Q+ 
Sbjct: 118 TTVSAPE--PERVCGDLVIDLAAHGARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLI 175

Query: 175 SAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDP---VDSKRFLGYSI 220
             ++   D A   +E +V+ HI    K LR KL  DP   +D+ R +GY +
Sbjct: 176 DIVW---DPAWVGDERLVDVHI----KNLRRKLDADPARYIDTVRGVGYRM 219


>gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
          Length = 238

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++AR
Sbjct: 54  LMLPGVDGLEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIAR 113

Query: 112 VAAIYRR-------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           V A++RR       L +   R     + +    R+ +++GEV  L  RE  +L Y   + 
Sbjct: 114 VKALFRRQEAMGQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHP 173

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           G+  ++  +   ++G   E   E+ V +HI++LR K+
Sbjct: 174 GEVFSRLALLEQVWGYQHEGY-EHTVNTHINRLRSKI 209


>gi|145635435|ref|ZP_01791136.1| transcriptional regulatory protein [Haemophilus influenzae PittAA]
 gi|260582810|ref|ZP_05850596.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|145267309|gb|EDK07312.1| transcriptional regulatory protein [Haemophilus influenzae PittAA]
 gi|260094136|gb|EEW78038.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|301170463|emb|CBW30070.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Haemophilus influenzae 10810]
          Length = 221

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L    G +V
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R    H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A I RR 
Sbjct: 63  LQQWR--SNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E   +++  + R   +  +   L  RE ++LE  M N+ + ++++ I   +  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +DE +    ++ HI  LR+KL
Sbjct: 181 -WDEEISSGALDVHIYNLRQKL 201


>gi|150014934|ref|YP_001307188.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901399|gb|ABR32232.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 227

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 5/162 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           L  I +      +I ++    L   L  F+ G +D + KP    E+ AR+ +I + + KV
Sbjct: 63  LSHISKNCLNTGVIILTAKEELGDKLKAFNLGANDYLTKPFFMEELKARINSILKSMGKV 122

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  E   +++    +   +      L  +  ++LEY++ N+G  + K QIF  + G 
Sbjct: 123 KRANLLEFKDMKIDMKVKKVYIGTNELELNEKLYKLLEYMVINKGVLLFKEQIFDNVCGY 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             +A  E ++E +IS+LRK+L    G+   + +KR +GY +D
Sbjct: 183 NSDAATE-IIEVYISRLRKQL-GTFGYGKYLITKRGMGYLLD 222


>gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 239

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NNR 125
           S +P+I ++   S Q  L  F  GVDD + KP    E+ AR+ AI  R + S      N+
Sbjct: 72  SDIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIRAILARAQRSLPAQRKNQ 131

Query: 126 AETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
              G   +  D R+    + ++ PL   E R+LEYL  N+G+ V++ ++   ++G++  +
Sbjct: 132 ITFGEFIMDLDKRELWRGREQMIPLTPTEFRLLEYLARNKGRAVSEQELSEQVWGVYLSS 191

Query: 185 VEENVVESHISKLRKKLRN 203
            + + V  +I  LR+K+ +
Sbjct: 192 -DRSAVRRYIWLLRQKIES 209


>gi|319787643|ref|YP_004147118.1| PhoB family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466155|gb|ADV27887.1| two component transcriptional regulator PhoB, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 229

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 20/174 (11%)

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   LEL R  R  +   +VP+I ++        +   ++GVDD V KP   RE+LAR+ 
Sbjct: 58  GTSGLELARRWRREALTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSSRELLARIR 117

Query: 114 AIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           A+ RR         +   N R +    RVF+ G  P   G        E R+L + M + 
Sbjct: 118 AVMRRSREDDEDGSVAAGNLRIDGAAHRVFA-GDAPVAIGPT------EYRLLHFFMTHP 170

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +  ++ Q+   ++G     VEE  ++ HI +LR+ L        V + R  GY
Sbjct: 171 DRVYSRAQLLDHVWG-GSVYVEERTIDVHIRRLRRTLEPFGADGMVQTVRGAGY 223


>gi|228923572|ref|ZP_04086852.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836041|gb|EEM81402.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 229

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 76/179 (42%), Gaps = 22/179 (12%)

Query: 50  EAFLIGKGEKV------LELP--------RIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           EA +I + EKV      + LP        R IR  S+VP+I ++       TL  F+ G 
Sbjct: 37  EALVIFEQEKVDLVILDIMLPELDGWSVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGA 96

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAET-------GPIRVFSDGRDPEVQGEVFP 148
           DD V KP     +LAR   +    K S    E          I V    R   V      
Sbjct: 97  DDYVTKPYSPPILLARAKRLLESRKASKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVS 156

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           L   E  IL Y M N+G  + + Q+ S I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 157 LTHTEFEILVYFMKNQGIVLTREQLISRIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|183599542|ref|ZP_02961035.1| hypothetical protein PROSTU_03022 [Providencia stuartii ATCC 25827]
 gi|188021789|gb|EDU59829.1| hypothetical protein PROSTU_03022 [Providencia stuartii ATCC 25827]
          Length = 238

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 22/207 (10%)

Query: 23  GVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQ 72
           G+ L GFN L    W  L S A++ +++    L+        G G +  EL    R+   
Sbjct: 32  GLELAGFNPL----WVRLLSDAKQQLNSRNFDLMLLDLGLPDGDGNE--ELIAWRRSGQS 85

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P+I ++    +   +   DSG DD + KP    E+++RV A+ RR+   S+   +   +
Sbjct: 86  IPIIILTARNQMDNLVTSLDSGADDFLTKPFAMPELISRVKAVSRRMAGFSSEIWQLDNL 145

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           ++        +  ++  L  +E ++L  L+ N    V K  +   ++G FD+ +E N +E
Sbjct: 146 QLNPINHQVLLNDQLLLLSGKEYQLLYELVKNADNVVRKADLEQRLFG-FDDKIESNSLE 204

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            HI  LR+    K+G D + + R +GY
Sbjct: 205 VHIHNLRR----KIGKDRIITIRGIGY 227


>gi|182685018|ref|YP_001836765.1| response regulator [Streptococcus pneumoniae CGSP14]
 gi|182630352|gb|ACB91300.1| response regulator [Streptococcus pneumoniae CGSP14]
          Length = 236

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 11/120 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV------SNNRAET----GPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LARV A+ RR K       S+N A+     G ++V+ +  +    
Sbjct: 96  GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  L  +E  +L YLM +    + + ++   I+G +D   E  +V+ HI KLR+K+ +
Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214


>gi|162149190|ref|YP_001603651.1| two component transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545067|ref|YP_002277296.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787767|emb|CAP57363.1| Two component Transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532744|gb|ACI52681.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 258

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 8/152 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
            P++ +S   ++   +    +G DD + KP    E+ AR+ A+ RR    NN  ET    
Sbjct: 107 TPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRR---PNNTRETMLHV 163

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           GP+ +    R     GE   L  RE R+LEYLM    + + +T +   ++  +    + N
Sbjct: 164 GPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWN-YRFIPQTN 222

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +V+ HI KLR+K+ +      + S R  G+ +
Sbjct: 223 LVDVHIGKLRRKIDDPGAQPLIQSIRGTGFML 254


>gi|160879175|ref|YP_001558143.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427841|gb|ABX41404.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 224

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S +P+  IS   S    L   + G DD + KP     +LA+V  + +RL+ +
Sbjct: 64  LCKEIREFSDIPIFFISARQSDDDILMALNIGGDDYIKKPYALSVLLAKVKVVLKRLEDT 123

Query: 123 NNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             R   ++G IRV    R   V+     L  +E ++  YL  +    + K ++F+ ++G 
Sbjct: 124 KERLPMQSGRIRVDVKARKVYVEDMEIELKNKEFKLFLYLFQHPNIVITKDELFANVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D    +  +  HI KLR+K+
Sbjct: 183 -DAFFSDGTLNVHIRKLREKI 202


>gi|315616229|gb|EFU96848.1| transcriptional regulatory protein creB [Escherichia coli 3431]
          Length = 229

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQLVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTAPSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|310827285|ref|YP_003959642.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739019|gb|ADO36679.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 222

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   ++   +   D G DD + KP   +E+ AR+ A+ RR     +    G I 
Sbjct: 73  TPVLMLTAKGTVDDKVKGLDLGADDYLIKPFSAKELFARIRALSRR----PDHEIKGEII 128

Query: 133 VFSD---------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            F D          + PE +   + L  +E +ILE L+    +   + QI   ++G FD+
Sbjct: 129 SFEDVSFNTKKNMMQTPENE---YKLSVKEAKILEMLLKRPNQVFTREQILDRVWG-FDK 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V EN +E ++  LRKKL N      +D+ R +GY++
Sbjct: 185 EVNENNIEIYVHNLRKKLANTNV--KIDTIRGVGYTL 219


>gi|293376811|ref|ZP_06623031.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292644563|gb|EFF62653.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 230

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 6/118 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG--PIRVFSDGRDPEVQGE 145
            D G DD + KP   RE+++++ AI RR   L    N+   G   I++ +   +  V G+
Sbjct: 93  LDFGADDYMTKPFSSREVVSKIKAIIRRKEVLSSEKNKNYLGYRSIKLDNSRFEVLVNGQ 152

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           V     +E  +LE+L+ ++G+ +++  +   ++G F+   +  +V+ HI K+R+KL++
Sbjct: 153 VIDFTLKEYELLEFLIQHKGQAMSRDVLLDRLWG-FEYDGDTRIVDVHIFKIREKLKD 209


>gi|228993178|ref|ZP_04153099.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|229006775|ref|ZP_04164408.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228754397|gb|EEM03809.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228766504|gb|EEM15146.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 235

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 11/164 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKV 121
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYIAKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+  ++   +R   +F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SSAESDCFGVRGLLLFPSQHTVEWQGKQIELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL      + + +KR  GY++
Sbjct: 183 -LWDELAFVDDNTLTVNVKRVRKKLEELGIVNAIVTKRGYGYAL 225


>gi|227823552|ref|YP_002827525.1| two component transcriptional regulator [Sinorhizobium fredii
           NGR234]
 gi|227342554|gb|ACP26772.1| two component transcriptional regulator [Sinorhizobium fredii
           NGR234]
          Length = 232

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IRA S VP++ ++        +   + G DD + KP + RE+LAR+ AI RR   
Sbjct: 63  ETCRRIRAVSDVPILMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRRRNG 122

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S   + T   G + +    R   + G V  L   +  +L  L  N G+ +++ Q+  A+ 
Sbjct: 123 SATVSRTFRFGRLEIDPGSRSVRIDGRVCALTSYQFDLLVALAENAGRTLSREQLMDAVK 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           G   EA + + ++ H+S++R  + +    DP   +R +
Sbjct: 183 GEELEAFDRS-IDVHVSRIRAAIES----DPRHPRRII 215


>gi|77463153|ref|YP_352657.1| phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126462025|ref|YP_001043139.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221639010|ref|YP_002525272.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|332558027|ref|ZP_08412349.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
 gi|77387571|gb|ABA78756.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126103689|gb|ABN76367.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|221159791|gb|ACM00771.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
 gi|332275739|gb|EGJ21054.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
          Length = 230

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 11/154 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP+I +S        +   ++G DD V KP    E++ARV +  RR + S+     G   
Sbjct: 81  VPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRARPSS----VGLTL 136

Query: 133 VFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            F D R DPE        ++  L   E R+L   M   G+  ++ Q+   ++G  D  V+
Sbjct: 137 EFEDIRLDPETHKVHRGAQLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG-RDIYVD 195

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 196 SRTVDVHVGRLRKALCLHGGEDPVRTVRGAGYAL 229


>gi|332520078|ref|ZP_08396542.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
 gi|332044637|gb|EGI80831.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
          Length = 227

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVF 147
           FD+G DD + KPI  + +L++V A+ RRLK     A   + G + +  +     + G+  
Sbjct: 98  FDAGADDYITKPIKPKLLLSKVKALLRRLKAEEGNATIVKVGNLTINKEEYKIILDGKEI 157

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            LP++E  +L  L +  GK   +  I   I+G  +  V    ++ HI    +K+R+K+G 
Sbjct: 158 LLPKKEFELLSLLASKPGKVFKRENILERIWG-NEVVVGGRTIDVHI----RKIRDKIGD 212

Query: 208 DPVDSKRFLGYS 219
             + + + +GY 
Sbjct: 213 KSIKTIKGVGYK 224


>gi|327482088|gb|AEA85398.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 22/175 (12%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VLEL   IR   Q  +I ++    L+  +   +SG DD + KP    E+LAR+  + 
Sbjct: 59  GWEVLEL---IRRRKQTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLL 115

Query: 117 RR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR         L+V++   + G  R +  G+  ++  + F L       L  LM   G+ 
Sbjct: 116 RRGEAVALPSNLRVADLELDPGRHRAYRSGQRIDLTSKEFAL-------LHLLMRRTGEV 168

Query: 168 VAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +T+I + ++ + FD   + NVV+  I +LR K+    G   + + R +GY ++
Sbjct: 169 LTRTEITALVWDINFD--CDTNVVDVAIRRLRMKVDEPFGDRLIHTIRGVGYVLE 221


>gi|319744691|gb|EFV97036.1| nisin biosynthesis regulatory protein NisR [Streptococcus
           agalactiae ATCC 13813]
 gi|319757769|gb|ADV69711.1| NsuR [Streptococcus suis JS14]
          Length = 232

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 11/170 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR     P+I +S   S    +   + G DD + KP    +++A+VAA  +R +
Sbjct: 61  LQICKQIRKSVSSPIIFVSAKDSEDDIVSGLNLGGDDYITKPFSVNQLVAKVAAHLKREE 120

Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              N         E  P+  +   +   V GE   L +RE  ILE L +   K   + +I
Sbjct: 121 RYRNAESNESVIRELFPLTFYLQEKLVCVNGEAISLTKREYDILELLSSKTNKVYTREEI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  +Y    +A+  ++ E +I ++R K     G +P+ + R +GY   WN
Sbjct: 181 YECVYDDEADALFRSISE-YIYQIRVKF-GPYGINPIKTIRGMGYK--WN 226


>gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073377|gb|ADJ62776.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFP 148
            D+G DD + KP   RE+ AR+ A+ RR    + +     GPI +        + G    
Sbjct: 114 LDNGADDYITKPFSPRELTARIKALLRRKSPEHAQEVMSAGPITLDPASCSVSLSGARID 173

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKLRNKLGF 207
           +   E ++L++ +A+  +  +++Q+   ++G  D  V EE  V+ H+ +LRK LR+    
Sbjct: 174 IGHAEYKLLKFFLAHPDRVFSRSQLLDRVWG--DHVVIEERTVDVHVLRLRKALRDAEYL 231

Query: 208 DPVDSKRFLGYSI 220
             + + R +GY +
Sbjct: 232 --IKTVRSVGYML 242


>gi|297563709|ref|YP_003682683.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848157|gb|ADH70177.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 219

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+      +P++ ++    ++ T+   + G DD V KP    E+LARV     RL++ 
Sbjct: 64  LRRVRSLGVDIPVVILTARDGVRDTVTGLEIGADDYVTKPFRFEELLARV-----RLRMR 118

Query: 123 NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N R         G + +    R   V+G    L  RE  +LE LM + G+ + + Q+ S 
Sbjct: 119 NERPTELTVLRAGGLALDLRTRRVAVEGTSVDLTAREFSLLELLMRHPGQVLTRQQMLSH 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     NVV+  +    + LR K+G + + + R +GY +
Sbjct: 179 VWG-YDYDPGSNVVDVFV----RALRRKVGAERIVTVRGMGYRL 217


>gi|170702575|ref|ZP_02893449.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170132509|gb|EDT00963.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 232

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 7/154 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   +    +G DD + KP    E+  R+ A+ RR + +  + E    
Sbjct: 80  RTPVLMLSALSDVDERIRGLRAGGDDYLIKPFDLEEMALRLEALMRRNRAAPAQPEAKLS 139

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            GP+ +    R     G    L   E R+LE++M + G+ + +T +F A++G  FD    
Sbjct: 140 VGPLSLDLITRKVHRDGTEIALLPTEFRVLEFMMRHAGQTITRTMLFEAVWGYHFDPGT- 198

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N+++ H+ +LRKKL        + + R  GY +
Sbjct: 199 -NLIDVHMGRLRKKLDPPGETPMIQTIRGTGYML 231


>gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae OXC141]
          Length = 235

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 11/120 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV------SNNRAET----GPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LARV A+ RR K       S+N A+     G ++V+ +  +    
Sbjct: 96  GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  L  +E  +L YLM +    + + ++   I+G +D   E  +V+ HI KLR+K+ +
Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214


>gi|50122111|ref|YP_051278.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612637|emb|CAG76087.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 242

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 11/178 (6%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89
           N  +  EW++  +    S I   L+  G   L L R IR  S VP+I ++        L 
Sbjct: 42  NGNDVVEWVRQHSP---SLILLDLMLPGCDGLTLCRTIRQFSNVPIIMVTARIEEIDRLL 98

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN------RAETGPIRVFSDGRDPEVQ 143
             + G DD + KP   RE++ RV  + RR    N+      ++ET  + +   G      
Sbjct: 99  GLEIGADDYICKPFSPREVVVRVRTLLRRCGWQNDGVKAAEKSETA-LLIDKSGFQASYL 157

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           G+   L   E R+L+ L    GK  ++  +   +Y  +   V +  ++SHI  LR+KL
Sbjct: 158 GQNLDLTPAEFRLLKTLSTEPGKVFSREALLDKLYDDY-RVVTDRTIDSHIKNLRRKL 214


>gi|34556509|ref|NP_906324.1| putative two-component regulator [Wolinella succinogenes DSM 1740]
 gi|34482223|emb|CAE09224.1| PUTATIVE TWO-COMPONENT REGULATOR [Wolinella succinogenes]
          Length = 219

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 13/144 (9%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L  I R   + P I IS    + T L  F+ G +D + KP   RE+LAR+A+  +     
Sbjct: 62  LEEIRRIDRKTPAIIISSENDIDTVLKSFERGCNDFLRKPFDPRELLARIASHTQNRPSC 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L     R + G   +F        + ++ PL ++E R+LE L  + G+  +  +I + +
Sbjct: 122 FLIDKRYRFDLGAKLLFC-------EEDIVPLTKKELRLLEILALHEGRVASLEEITNHV 174

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G + E V+   +   +S+LRKKL
Sbjct: 175 WGYYQE-VDGTSLRGLVSRLRKKL 197


>gi|22298132|ref|NP_681379.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294310|dbj|BAC08141.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 256

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 13/203 (6%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVLELPRII 67
           AL ++GY  L   DG   E  N +      ++S  + +V  I   ++  G   L+L R+I
Sbjct: 40  ALQEEGYHTLVASDGY--EALNLIHTYLLRETSPEQGEVCLIILDVMLPGINGLDLCRLI 97

Query: 68  RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R     VP++ IS   S    +   + G DD + KP   RE+LAR  A+ RR ++   +A
Sbjct: 98  RRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARCRALLRRTRI--QQA 155

Query: 127 ETGPIRVFSD-GRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              P+  F D    P+     ++GE   L  +E ++LE  M +  +   + Q+   ++G 
Sbjct: 156 TLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVWPREQLLDQVWG- 214

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
            D   +   V+ HI  LR+K+  
Sbjct: 215 PDFVGDSKTVDVHIRWLREKIET 237


>gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 229

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 5/140 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I ++        +   + G DD + KP   RE++AR+ A+ RR    + + 
Sbjct: 69  IRRVSKVPIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRRAGTESKKE 128

Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           E       +R+    R+ +V+ +   L  +E  +L  L    G+  ++ Q+   ++G FD
Sbjct: 129 EHILKFPGMRIDLISREIQVKEKPVTLTPKEFELLALLAKTAGRSYSREQLLEEVWG-FD 187

Query: 183 EAVEENVVESHISKLRKKLR 202
              +   V++H+++LR KLR
Sbjct: 188 YYGDVRTVDTHVNRLRDKLR 207


>gi|312959878|ref|ZP_07774393.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311285825|gb|EFQ64391.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 254

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 21/182 (11%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD ++KP   RE++AR+
Sbjct: 76  LMLPGEDGLSLCRWLRSESDIPILMLTARCEPTDRIIGLELGADDYMSKPFEPRELVARI 135

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V ++R E      F + R   V        G V PL   E R+L ++   R 
Sbjct: 136 QTILRR--VRDDRTEQRANIRFDNWRLNSVLRQLVADNGLVVPLSNAEFRLL-WVFIERP 192

Query: 166 KRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219
           +RV ++ Q+  A  G   EA + +     I  L  +LR KLG DP     + + R  GY 
Sbjct: 193 RRVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDPKAPQLIKTVRGEGYL 247

Query: 220 ID 221
            D
Sbjct: 248 FD 249


>gi|299534474|ref|ZP_07047807.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
           ZC1]
 gi|298730102|gb|EFI70644.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
           ZC1]
          Length = 233

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 3/145 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    VP+I ++        +   + G DD + KP    E+LAR+ A+ RR        
Sbjct: 66  IRKFWDVPIIMLTAKGEHADIVKGLNLGADDYILKPFDEEELLARIHAVLRRTISEEKVI 125

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               + +  +  +   Q +  PL  +E  +L   +  + +  ++  +  A++G +D  +E
Sbjct: 126 NFEGLCLDRESFEVYFQHKAIPLTPKEFAMLALFLDYQNRAFSREHLIHAVWG-YDVTIE 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVD 211
           +  ++SH+  LR+KLR K GF P D
Sbjct: 185 DRTIDSHVRNLREKLR-KSGF-PAD 207


>gi|295107369|emb|CBL04912.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 234

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 9/147 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IRA S VP+I +S        ++    G DD + KP    E LARV+   R    
Sbjct: 71  ELVREIRARSDVPVIVVSARADTGDKVELLKLGADDYLAKPFDLDEPLARVSVQLRHASR 130

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              R+ +G +R     + ++ R     G+   L R E  I+E L+    K   K ++F A
Sbjct: 131 GAGRS-SGTLRFKDWVLDAEARTLTAAGDPVRLTRLEFGIVEALVRRPKKVFTKRELFQA 189

Query: 177 IYGLFDEA-VEENVVESHISKLRKKLR 202
            +   +EA VEE  V  H+S +R KL+
Sbjct: 190 AWN--EEAFVEEKAVNVHVSNIRGKLK 214


>gi|291528837|emb|CBK94423.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 231

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R +R    VP++ +S        L+  + G DD + KP  + E++++V A+ RR +
Sbjct: 60  IETCRRMRERHSVPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALIRRYR 119

Query: 121 V----SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V    S NR       ET  +++F++    E       L  +E  IL+ LM N  +    
Sbjct: 120 VYDSGSANRTNKDESIETDGLKLFTNRNKVEFNDNEIKLTGKEYEILKLLMKNPDRIYTI 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I+  ++        +N V  HI  LR KL    G   + ++   GY
Sbjct: 180 EMIYEMVWDEVFTYNAKNTVMVHIKNLRNKLIKACGDACIHTEWGRGY 227


>gi|229159731|ref|ZP_04287740.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623756|gb|EEK80573.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 225

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD + KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N  A+     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNQHAQIQYHGILWDEAKHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220


>gi|297192015|ref|ZP_06909413.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719538|gb|EDY63446.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
          Length = 223

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 15/206 (7%)

Query: 23  GVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLI 76
           G++ EG+      + L+   R      D+  ++  L G  G +V    R   A   VP++
Sbjct: 19  GLTAEGYAVDVVHDGLEGLHRATEGVHDLVVLDIMLPGMNGYRVCAALRA--AGHDVPVL 76

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVF 134
            ++         +  D+G DD + KP  +  ++ARV A+ RR   +        G +RV 
Sbjct: 77  MLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRGRAGGSPVLTAGDLRVD 136

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
           +  R     GE   L  +E  +LE+L     + V K +I   ++    E  + N+VE +I
Sbjct: 137 TATRRVHAGGEEVALTAKEFAVLEHLATRTDEVVGKPEILEHVWDFAYEG-DPNIVEVYI 195

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S LR+    KLG D + + R  GY +
Sbjct: 196 SALRR----KLGADRILTVRGAGYRL 217


>gi|254413738|ref|ZP_05027507.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179335|gb|EDX74330.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 227

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 8/147 (5%)

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL + +R+  +  P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR 
Sbjct: 60  LELCQQLRSQGKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELLARVRALLRRS 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +   A    +RV S   D E Q     G +  L  +E ++L+Y M + G+ +   +I+
Sbjct: 120 AATETNAPV-RLRVASLELDVENQLAYRNGRLIELSEKETQLLDYFMRHSGQLLTHGEIY 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++   +E    NV+ + +  LR+K+
Sbjct: 179 QQLWQ-DEEQPSSNVLAALVRLLRRKI 204


>gi|154684707|ref|YP_001419868.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154350558|gb|ABS72637.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 227

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 5/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122
           IR  S  P+I  S   S    +   ++G DD + KP     ++A++ AI RR    +   
Sbjct: 70  IREVSSAPIIFCSSRNSNMDIVMAINNGGDDYIQKPFDSHVLVAKLQAIIRRTYEYITAE 129

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++  E+  + +  +      Q +   L + E +IL+ LM N+GK V++  +   ++   D
Sbjct: 130 SHLIESNNVILNLNDAKIYFQDQSLELTKNEFKILKTLMENKGKVVSRDNLMRQLWN-DD 188

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V EN +  +I++LR +L      D + +K+ +GY I
Sbjct: 189 IYVNENTLTVNINRLRNRLEGINVDDFILTKKGMGYII 226


>gi|94991797|ref|YP_599896.1| response regulator CsrR [Streptococcus pyogenes MGAS2096]
 gi|94545305|gb|ABF35352.1| Response regulator CsrR [Streptococcus pyogenes MGAS2096]
          Length = 228

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE +VV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETHVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|33595087|ref|NP_882730.1| transcriptional regulatory protein [Bordetella parapertussis 12822]
 gi|33565164|emb|CAE35960.1| transcriptional regulatory protein [Bordetella parapertussis]
          Length = 237

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 28/222 (12%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L + G++     DG S  G  +   ++W       D+  ++  L    + +  L  +  
Sbjct: 20  GLTELGHMVTVSGDGAS--GLENAMKDQW-------DIIILDRMLPNNVDGLSILSTLRA 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------L 119
              + P++ +S   ++   +D   +G DD + KP    E++AR+ A+ RR         L
Sbjct: 71  LGKKTPVLVLSALSAVDDRVDGLRAGGDDYLVKPFSFSELVARLDALVRRTRPDPDVKEL 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++++        +V   GR   +Q + F       R+L YLM +  + V +T +   I+G
Sbjct: 131 RIADLSVNVATQKVQRAGRPISLQPQEF-------RLLVYLMLHAHRIVTRTMLLETIWG 183

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD   + NV++  +S+LR+K+        + + R  GY++
Sbjct: 184 YSFDP--QSNVIDVQVSRLRRKIDASCATPLIHTIRGAGYTL 223


>gi|148547951|ref|YP_001268053.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148512009|gb|ABQ78869.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 219

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 11/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D   + +       DDG +++    L+       S   D+  ++  L  G+G   L
Sbjct: 4   LLVEDAPGLGEAVREQIADDGHAVDWVQRLDHARNSVRSTPYDLILLDLMLPDGRG---L 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R  RA   V P+I ++    +   +   ++G DD + KP    E+ ARVAA+ RR  
Sbjct: 61  DFLRQQRAAGDVTPVIILTAQDQISDRIAGLNAGADDYLVKPFDLFELSARVAAVGRRYS 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N +   G ++V    R  +       L  RE  + E  +      ++K+Q+   +Y 
Sbjct: 121 GNPNPQIRLGDLQVDMSARTVQRGSATVDLTAREWALFEAFVQRPSALLSKSQLEERLYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F   +E N +E +IS+LRKKL  +L    +++ R +GY +
Sbjct: 181 -FGAEIESNTIEVYISRLRKKLGREL----IETVRGMGYRL 216


>gi|333030607|ref|ZP_08458668.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332741204|gb|EGJ71686.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 225

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 10/206 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI---GKGE 58
            ++I+D   + D  +     +    E   +  +EE L+  +    S I   L    G G 
Sbjct: 3   ILIIEDEKTLSDNMMRYLTANNYRCE--QAFTYEEGLEKISLYSYSCILLDLNLPDGDGM 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +LE  R  +  S V  I IS   +L   +    +G DD + KP    E+  R+ A+ RR
Sbjct: 61  HLLEEIRNNKIDSGV--IIISARGALDDKIRGLMTGADDYLAKPFSLPELSVRIYALLRR 118

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S N  E+  I +   G+  +V GE   L + E  +L +L+AN+ + ++K  I   
Sbjct: 119 RLGTTSTNTLESNGIVIDLLGKTAKVNGESLNLTKTEYNLLLFLIANKNRVISKNAIAEH 178

Query: 177 IYG-LFDEAVEENVVESHISKLRKKL 201
           + G + D     N + +HI  L+ KL
Sbjct: 179 LSGDMADMFNSHNFIYTHIKNLKAKL 204


>gi|309783437|ref|ZP_07678143.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
 gi|308917836|gb|EFP63527.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
          Length = 206

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 5/156 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126
           A   VP++ ++   S+   +   + G DD + KP    E+LARV  + RR    VS++R 
Sbjct: 47  AEQAVPVLFLTARDSVADRVKGLEMGADDYLVKPFAFAELLARVRTLLRRGTGAVSSDRI 106

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           +   + +    R     G+  PL  +E  +LE L+  RG+ + ++ I S ++ + FD   
Sbjct: 107 QVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVWDMNFDS-- 164

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 165 DTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLE 200


>gi|293607374|ref|ZP_06689713.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814218|gb|EFF73360.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC
           43553]
          Length = 222

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 37/235 (15%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE----AFLIGKG 57
            +L++D  ++ D   A   +DG ++          W+++ +   ++ ++    A L+  G
Sbjct: 3   ILLVEDDPMLGDALRAGLSNDGATVH---------WVRALSDAQLALVDHGFHAVLLDLG 53

Query: 58  ---EKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L L + +R      P++ I+    L   +   D+G DD + KP    E+LAR+ 
Sbjct: 54  LPEGSGLTLLKALRGRFDTTPVLIITARDRLSERIQGLDAGADDYLVKPFQLDELLARLR 113

Query: 114 AIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           A+ RR        L+  +   E     V  DGR+         L   E   L  LM   G
Sbjct: 114 AVLRRSSNSVVSALRCRDVVLEPASRLVRQDGRE-------VSLSAHEYHTLLALMQRMG 166

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V++ Q+  A+YG     +E N V  +I +LR+KL + L    ++++  LGY I
Sbjct: 167 HTVSRDQLEVAVYG-SSGTIESNTVAVYIHQLRRKLGDGL----IETQHGLGYRI 216


>gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 241

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 24/215 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L  +GY      DG +  G   LE   W          A+   L+  G   LE+ R  RA
Sbjct: 24  LQDEGYAVQHAADGNA--GLRELERGSW---------DALVLDLMLPGVDGLEICRRARA 72

Query: 70  HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------AIYRRLKV 121
            ++  P+I  S   S    +   + G DD + KP    E++ARV        A+ R  ++
Sbjct: 73  MTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRRTDALARNARM 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   E G +RV    R+ +V+G+   L  RE  +L +   + GK  ++  + + ++G +
Sbjct: 133 ESGLLELGNLRVDPVAREVQVEGKSVELTPREFDLLYFFARHPGKVFSRLNLLNQVWG-Y 191

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
                E+ V +HI++LR K+      DP + +R L
Sbjct: 192 QHDGYEHTVNTHINRLRMKVEA----DPTEPRRIL 222


>gi|29346400|ref|NP_809903.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568200|ref|ZP_04845611.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|29338296|gb|AAO76097.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842273|gb|EES70353.1| two-component system response regulator [Bacteroides sp. 1_1_6]
          Length = 228

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 18/168 (10%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR ++ ++P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELTKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR-- 119

Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           VS N  E     V++D R      D E       L  +E  +L Y++ N  + +++ +I 
Sbjct: 120 VSGNVPELPQELVYADLRIDLQRKDVERNNVSIKLSPKEYNLLLYMVENAERVLSRVEIA 179

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKL-RNKLGFDP--VDSKRFLGY 218
             ++   FD     N ++ +I+ LRKK+ RN   F+P  + +K  +G+
Sbjct: 180 EKVWNTHFDTGT--NFIDVYINYLRKKIDRN---FEPKLIHTKAGMGF 222


>gi|323484284|ref|ZP_08089652.1| hypothetical protein HMPREF9474_01403 [Clostridium symbiosum
           WAL-14163]
 gi|323402436|gb|EGA94766.1| hypothetical protein HMPREF9474_01403 [Clostridium symbiosum
           WAL-14163]
          Length = 209

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R IR+ S+ P+I +S        +D  D+G DD + KP    E+LAR+   +RRL 
Sbjct: 82  IDIIRKIRSWSKTPIIVLSARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTFRRLN 141

Query: 121 VSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + + A   P  VF++G            + G+   L   E ++L  L  N GK +  T 
Sbjct: 142 DAGDSA-AAPASVFTNGEMRLDYAAGTVTMSGQELHLTPIEYKLLCLLAKNVGKVLTHTY 200

Query: 173 IFSAIYG 179
           I   I+G
Sbjct: 201 ITKKIWG 207


>gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 240

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++ARV A++RR 
Sbjct: 64  LEICRRIRQMARYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALFRRQ 123

Query: 120 KV--SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    N R E G I       DP      ++GE+  L  RE  +L +   + G+  ++  
Sbjct: 124 EAMGQNIRLEGGMISCHGLAIDPLAREVRLRGELVDLTPREFDLLYWFARHPGEVFSRLS 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   ++G   E   E+ V +HI++LR K+
Sbjct: 184 LLDNVWGYQHEGY-EHTVNTHINRLRTKI 211


>gi|308180328|ref|YP_003924456.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308045819|gb|ADN98362.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 175

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 4/163 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR H  +P+I ++    +   +   D G DD + KP    E+LARV  I R   
Sbjct: 8   LEVLRRIRKHDTIPVIMMTARDYVSDKVAGLDGGADDYITKPFDTEELLARVRVILRHAD 67

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N         + + +  R  +    +  L +RE  +L  LM N      + ++   +
Sbjct: 68  QQQNLQAVYKFADLELNTKSRQVKRNHHLVQLTQREYELLLTLMKNAPITFTRDELLDQV 127

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G+  E  + N+V+ +I  LR K+        + + R +GY +
Sbjct: 128 WGVDFEG-QPNIVDVYIRYLRHKIDTDTQRKLIHTVRGVGYCL 169


>gi|308175669|ref|YP_003922374.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens
           DSM 7]
 gi|307608533|emb|CBI44904.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens
           DSM 7]
 gi|328555650|gb|AEB26142.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens
           TA208]
          Length = 229

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 19/200 (9%)

Query: 39  QSSAREDVSAI-EAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISDYPSLQT 86
           Q+ A  D +A+ + FL  K + VL    LP        R IR HS  P+I IS       
Sbjct: 27  QTVAAADFTAVLDVFLQEKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISARSGEMD 86

Query: 87  TLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDGRDP 140
            +   ++G DD + KP  +  +LA++ +  RR       K      E   +++F +  + 
Sbjct: 87  QVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVLEYAGVQLFVERFEL 146

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
             Q E   L ++E ++LE L+    K   + ++    +   D  V++N +  +I++LRKK
Sbjct: 147 RFQDEKSELSKKESKLLEVLLERGEKVTGRDRLMEKTWDT-DIFVDDNTLNVYITRLRKK 205

Query: 201 LRNKLGFDPVDSKRFLGYSI 220
           LR       ++S R  GY +
Sbjct: 206 LRELNAPVSIESVRGEGYQL 225


>gi|264676967|ref|YP_003276873.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299531538|ref|ZP_07044944.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262207479|gb|ACY31577.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298720501|gb|EFI61452.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 236

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 4/149 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129
           +VP+I ++        ++   SG DD + KPI   E+ AR+AA+ RR     + +  + G
Sbjct: 73  EVPVIFVTHRSEEADIVEGLASGADDFMIKPIRAGELRARIAALLRRAYPLTAQSVLDFG 132

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P R  +     E+ G+   +  RE  +   L  N+G+ +++  +   ++G  +  V+   
Sbjct: 133 PYRFLTTTNGIEMDGQPVEVTHREYTLALTLFQNQGRLLSRDHLREVVWG-HNAEVQSRS 191

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +++H+S+LR  L  + G  P       GY
Sbjct: 192 LDTHVSRLRNLLNLRAG-QPYAISAVYGY 219


>gi|326203835|ref|ZP_08193697.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985933|gb|EGD46767.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 224

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 9/158 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I +S   +    +   ++G DD + KP   + ++A++ AI RR       A
Sbjct: 67  IREISKVPVIFLSSRDTNMDIIMAVNTGADDYIAKPFSMQILIAKIQAILRR-TYDYTTA 125

Query: 127 ETGPIR----VFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +   I     + + G    + G     L + E +IL  LM N+G+ V++  I   ++   
Sbjct: 126 DHDYIEHRALILNMGESSVIYGNSKSELTKNEMKILRLLMTNKGRIVSRESIMKLLWD-D 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           D+ V +N +  +I++LR +L + LG  D +++K+  GY
Sbjct: 185 DQYVNDNTLTVNINRLRSRLSD-LGLEDYIETKKGQGY 221


>gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 7/164 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +A + VP+I ++   ++   +  F+ G +D + KP    E+LARV  I R  +  
Sbjct: 65  LRRLRQAGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNILRIFQQY 124

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +E       G + +    R    +  V  L  RE  +L YL+ N+ +  ++  I S 
Sbjct: 125 PKESEGSDLIKVGDLTIELRTRKVYRKEIVIELTPREFELLVYLVENKNEEKSREDILSE 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D   E N+V+ +I  LR+KL        + + R +GY I
Sbjct: 185 VWG-YDFIGETNLVDVYIRYLRQKLDKGYRHKLIHTVRGVGYMI 227


>gi|166713358|ref|ZP_02244565.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 233

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR +  ++   + G  
Sbjct: 73  TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGKASEVVQIGGF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              +      + G    LP RE R+ E L+   G+ V K +I + ++G FD+    N +E
Sbjct: 133 VFDNAAHTLTLDGVPIELPNREYRLFEILIGRLGRVVGKDEIGNGLFG-FDDDAGPNAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LR+KL
Sbjct: 192 LYVGRLRRKL 201


>gi|159900549|ref|YP_001546796.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893588|gb|ABX06668.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 248

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 10/155 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S VP+I I+        +  F+ G DD + KP    E+ ARV AI RR++   +R 
Sbjct: 84  IRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVEGYQHRK 143

Query: 127 ETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +  +R+     D       + GE   L   E  +L +L AN G+   +  +F  ++G +
Sbjct: 144 ASPIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDREVLFREVWG-Y 202

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +   + N+V+  + +LR+K+  +    P   +R L
Sbjct: 203 EYVGQTNLVDVCVRRLREKIEEQ----PSKPRRIL 233


>gi|15804705|ref|NP_290746.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 EDL933]
 gi|15834349|ref|NP_313122.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. Sakai]
 gi|110644471|ref|YP_672201.1| DNA-binding transcriptional regulator BasR [Escherichia coli 536]
 gi|157158920|ref|YP_001465612.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           E24377A]
 gi|157163578|ref|YP_001460896.1| DNA-binding transcriptional regulator BasR [Escherichia coli HS]
 gi|168748031|ref|ZP_02773053.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755294|ref|ZP_02780301.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760973|ref|ZP_02785980.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766383|ref|ZP_02791390.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774482|ref|ZP_02799489.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780536|ref|ZP_02805543.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4076]
 gi|168784741|ref|ZP_02809748.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC869]
 gi|168798215|ref|ZP_02823222.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC508]
 gi|170021889|ref|YP_001726843.1| DNA-binding transcriptional regulator BasR [Escherichia coli ATCC
           8739]
 gi|170679832|ref|YP_001746506.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           SMS-3-5]
 gi|188494489|ref|ZP_03001759.1| DNA-binding response regulator BasR [Escherichia coli 53638]
 gi|191165619|ref|ZP_03027459.1| DNA-binding response regulator BasR [Escherichia coli B7A]
 gi|191173347|ref|ZP_03034876.1| DNA-binding response regulator BasR [Escherichia coli F11]
 gi|193063133|ref|ZP_03044225.1| DNA-binding response regulator BasR [Escherichia coli E22]
 gi|193067895|ref|ZP_03048861.1| DNA-binding response regulator BasR [Escherichia coli E110019]
 gi|194426834|ref|ZP_03059387.1| DNA-binding response regulator BasR [Escherichia coli B171]
 gi|194437292|ref|ZP_03069390.1| DNA-binding response regulator BasR [Escherichia coli 101-1]
 gi|195935902|ref|ZP_03081284.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808477|ref|ZP_03250814.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813842|ref|ZP_03255171.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820064|ref|ZP_03260384.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397598|ref|YP_002273657.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325375|ref|ZP_03441459.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218556665|ref|YP_002389579.1| DNA-binding transcriptional regulator BasR [Escherichia coli IAI1]
 gi|218697815|ref|YP_002405482.1| DNA-binding transcriptional regulator BasR [Escherichia coli 55989]
 gi|218707728|ref|YP_002415247.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           UMN026]
 gi|253775258|ref|YP_003038089.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037123|ref|ZP_04871200.1| two component transcriptional regulator [Escherichia sp. 1_1_43]
 gi|254796135|ref|YP_003080972.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. TW14359]
 gi|256024989|ref|ZP_05438854.1| DNA-binding transcriptional regulator BasR [Escherichia sp.
           4_1_40B]
 gi|260846908|ref|YP_003224686.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O103:H2 str. 12009]
 gi|260858217|ref|YP_003232108.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O26:H11 str. 11368]
 gi|260870866|ref|YP_003237268.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O111:H- str. 11128]
 gi|261225234|ref|ZP_05939515.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255514|ref|ZP_05948047.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O157:H7 str. FRIK966]
 gi|291285529|ref|YP_003502347.1| DNA-binding response regulator BasR [Escherichia coli O55:H7 str.
           CB9615]
 gi|293402745|ref|ZP_06646842.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           FVEC1412]
 gi|293407838|ref|ZP_06651678.1| DNA-binding transcriptional regulator BasR [Escherichia coli B354]
 gi|293417619|ref|ZP_06660241.1| two-component system [Escherichia coli B185]
 gi|293476410|ref|ZP_06664818.1| two-component system [Escherichia coli B088]
 gi|298378274|ref|ZP_06988158.1| two-component system [Escherichia coli FVEC1302]
 gi|300818032|ref|ZP_07098245.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821199|ref|ZP_07101347.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300897526|ref|ZP_07115941.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300906439|ref|ZP_07124136.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300924382|ref|ZP_07140357.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300930477|ref|ZP_07145878.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300947736|ref|ZP_07161900.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300954156|ref|ZP_07166622.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300994998|ref|ZP_07181022.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301017387|ref|ZP_07182140.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301021686|ref|ZP_07185674.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301302808|ref|ZP_07208937.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301330508|ref|ZP_07223121.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301644716|ref|ZP_07244694.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307140806|ref|ZP_07500162.1| DNA-binding transcriptional regulator BasR [Escherichia coli H736]
 gi|307312050|ref|ZP_07591687.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309796881|ref|ZP_07691283.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|312974084|ref|ZP_07788255.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1827-70]
 gi|331644860|ref|ZP_08345977.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H736]
 gi|331655943|ref|ZP_08356931.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M718]
 gi|331665779|ref|ZP_08366673.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA143]
 gi|331670976|ref|ZP_08371810.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA271]
 gi|331680240|ref|ZP_08380899.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H591]
 gi|331681048|ref|ZP_08381685.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H299]
 gi|12519083|gb|AAG59312.1|AE005644_6 transcriptional regulatory protein 2-component regulatory system
           member [Escherichia coli O157:H7 str. EDL933]
 gi|13364572|dbj|BAB38518.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli O157:H7 str. Sakai]
 gi|56540527|gb|AAV92717.1| PmrA [Escherichia coli]
 gi|56540529|gb|AAV92718.1| PmrA [Escherichia coli]
 gi|56540531|gb|AAV92719.1| PmrA [Escherichia coli]
 gi|56540533|gb|AAV92720.1| PmrA [Escherichia coli]
 gi|56540535|gb|AAV92721.1| PmrA [Escherichia coli]
 gi|56540537|gb|AAV92722.1| PmrA [Escherichia coli]
 gi|56540539|gb|AAV92723.1| PmrA [Escherichia coli]
 gi|56540541|gb|AAV92724.1| PmrA [Escherichia coli]
 gi|56540543|gb|AAV92725.1| PmrA [Escherichia coli]
 gi|56540545|gb|AAV92726.1| PmrA [Escherichia coli]
 gi|56540547|gb|AAV92727.1| PmrA [Escherichia coli]
 gi|56540549|gb|AAV92728.1| PmrA [Escherichia coli]
 gi|56540551|gb|AAV92729.1| PmrA [Escherichia coli]
 gi|56540553|gb|AAV92730.1| PmrA [Escherichia coli]
 gi|56540555|gb|AAV92731.1| PmrA [Escherichia coli]
 gi|56540557|gb|AAV92732.1| PmrA [Escherichia coli]
 gi|56540559|gb|AAV92733.1| PmrA [Escherichia coli]
 gi|56540561|gb|AAV92734.1| PmrA [Escherichia coli]
 gi|56540565|gb|AAV92736.1| PmrA [Escherichia coli]
 gi|56540567|gb|AAV92737.1| PmrA [Escherichia coli]
 gi|56540569|gb|AAV92738.1| PmrA [Escherichia coli]
 gi|56540571|gb|AAV92739.1| PmrA [Escherichia coli]
 gi|56540573|gb|AAV92740.1| PmrA [Escherichia coli]
 gi|56540575|gb|AAV92741.1| PmrA [Escherichia coli]
 gi|56540579|gb|AAV92743.1| PmrA [Escherichia coli]
 gi|56540581|gb|AAV92744.1| PmrA [Escherichia coli]
 gi|56540583|gb|AAV92745.1| PmrA [Escherichia coli]
 gi|56540589|gb|AAV92748.1| PmrA [Escherichia coli]
 gi|56540597|gb|AAV92752.1| PmrA [Escherichia coli]
 gi|56540599|gb|AAV92753.1| PmrA [Escherichia coli]
 gi|56540603|gb|AAV92755.1| PmrA [Escherichia coli]
 gi|56540605|gb|AAV92756.1| PmrA [Escherichia coli]
 gi|56540607|gb|AAV92757.1| PmrA [Escherichia coli]
 gi|56540643|gb|AAV92775.1| PmrA [Escherichia coli]
 gi|56540645|gb|AAV92776.1| PmrA [Escherichia coli]
 gi|56540647|gb|AAV92777.1| PmrA [Escherichia coli]
 gi|56540649|gb|AAV92778.1| PmrA [Escherichia coli]
 gi|56540651|gb|AAV92779.1| PmrA [Escherichia coli]
 gi|110346063|gb|ABG72300.1| transcriptional regulatory protein BasR/PmrA [Escherichia coli 536]
 gi|157069258|gb|ABV08513.1| DNA-binding response regulator BasR [Escherichia coli HS]
 gi|157080950|gb|ABV20658.1| DNA-binding response regulator BasR [Escherichia coli E24377A]
 gi|169756817|gb|ACA79516.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|170517550|gb|ACB15728.1| DNA-binding response regulator BasR [Escherichia coli SMS-3-5]
 gi|187769816|gb|EDU33660.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017496|gb|EDU55618.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489688|gb|EDU64791.1| DNA-binding response regulator BasR [Escherichia coli 53638]
 gi|189001669|gb|EDU70655.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357501|gb|EDU75920.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364240|gb|EDU82659.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368662|gb|EDU87078.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374840|gb|EDU93256.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC869]
 gi|189379213|gb|EDU97629.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC508]
 gi|190904314|gb|EDV64023.1| DNA-binding response regulator BasR [Escherichia coli B7A]
 gi|190906323|gb|EDV65933.1| DNA-binding response regulator BasR [Escherichia coli F11]
 gi|192931392|gb|EDV83994.1| DNA-binding response regulator BasR [Escherichia coli E22]
 gi|192958870|gb|EDV89307.1| DNA-binding response regulator BasR [Escherichia coli E110019]
 gi|194415170|gb|EDX31439.1| DNA-binding response regulator BasR [Escherichia coli B171]
 gi|194423848|gb|EDX39837.1| DNA-binding response regulator BasR [Escherichia coli 101-1]
 gi|208728278|gb|EDZ77879.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735119|gb|EDZ83806.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740187|gb|EDZ87869.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158998|gb|ACI36431.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4115]
 gi|209750778|gb|ACI73696.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750780|gb|ACI73697.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750782|gb|ACI73698.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750784|gb|ACI73699.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750786|gb|ACI73700.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|217321596|gb|EEC30020.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218354547|emb|CAV01439.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli 55989]
 gi|218363434|emb|CAR01088.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli IAI1]
 gi|218434825|emb|CAR15760.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli UMN026]
 gi|226840229|gb|EEH72231.1| two component transcriptional regulator [Escherichia sp. 1_1_43]
 gi|242379640|emb|CAQ34462.1| BasR transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253326302|gb|ACT30904.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253980104|gb|ACT45774.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli BL21(DE3)]
 gi|254595535|gb|ACT74896.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli O157:H7 str. TW14359]
 gi|257756866|dbj|BAI28368.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O26:H11 str. 11368]
 gi|257762055|dbj|BAI33552.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O103:H2 str. 12009]
 gi|257767222|dbj|BAI38717.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O111:H- str. 11128]
 gi|290765402|gb|ADD59363.1| DNA-binding response regulator BasR [Escherichia coli O55:H7 str.
           CB9615]
 gi|291320863|gb|EFE60305.1| two-component system [Escherichia coli B088]
 gi|291429660|gb|EFF02674.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           FVEC1412]
 gi|291430337|gb|EFF03335.1| two-component system [Escherichia coli B185]
 gi|291472089|gb|EFF14571.1| DNA-binding transcriptional regulator BasR [Escherichia coli B354]
 gi|298280608|gb|EFI22109.1| two-component system [Escherichia coli FVEC1302]
 gi|299882731|gb|EFI90942.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300304895|gb|EFJ59415.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300318845|gb|EFJ68629.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300358747|gb|EFJ74617.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300397919|gb|EFJ81457.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300401775|gb|EFJ85313.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300419416|gb|EFK02727.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300452682|gb|EFK16302.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300461640|gb|EFK25133.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300526088|gb|EFK47157.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300529442|gb|EFK50504.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300842028|gb|EFK69788.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300843533|gb|EFK71293.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301076970|gb|EFK91776.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|306907857|gb|EFN38358.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|308119522|gb|EFO56784.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|309704580|emb|CBJ03930.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310331618|gb|EFP98874.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1827-70]
 gi|315063430|gb|ADT77757.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli W]
 gi|315253794|gb|EFU33762.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|315617492|gb|EFU98098.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           3431]
 gi|320175437|gb|EFW50537.1| Transcriptional regulatory protein basR/pmrA [Shigella dysenteriae
           CDC 74-1112]
 gi|320190755|gb|EFW65405.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           O157:H7 str. EC1212]
 gi|320200754|gb|EFW75340.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           EC4100B]
 gi|320638872|gb|EFX08518.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. G5101]
 gi|320644241|gb|EFX13306.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H- str. 493-89]
 gi|320649559|gb|EFX18083.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H- str. H 2687]
 gi|320654955|gb|EFX22916.1| DNA-binding transcriptional regulator BasR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660462|gb|EFX27923.1| DNA-binding transcriptional regulator BasR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320665732|gb|EFX32769.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155841|gb|EFZ42009.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           EPECa14]
 gi|323162098|gb|EFZ47967.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           E128010]
 gi|323171538|gb|EFZ57184.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           LT-68]
 gi|323176002|gb|EFZ61594.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1180]
 gi|323182218|gb|EFZ67628.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1357]
 gi|323935427|gb|EGB31765.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323940032|gb|EGB36226.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323946107|gb|EGB42142.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323960387|gb|EGB56024.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323969906|gb|EGB65184.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|324015821|gb|EGB85040.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|324118681|gb|EGC12573.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|326346590|gb|EGD70324.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           O157:H7 str. 1044]
 gi|331035835|gb|EGI08073.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H736]
 gi|331046297|gb|EGI18387.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M718]
 gi|331056830|gb|EGI28824.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA143]
 gi|331061890|gb|EGI33815.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA271]
 gi|331071703|gb|EGI43039.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H591]
 gi|331081269|gb|EGI52430.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H299]
 gi|332083467|gb|EGI88691.1| transcriptional regulatory protein basR/pmrA [Shigella boydii
           5216-82]
 gi|332346120|gb|AEE59454.1| transcriptional regulatory protein BasR [Escherichia coli UMNK88]
          Length = 222

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E  QS      S +   L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ 
Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IY  +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219


>gi|260438704|ref|ZP_05792520.1| DNA-binding response regulator VncR [Butyrivibrio crossotus DSM
           2876]
 gi|292808906|gb|EFF68111.1| DNA-binding response regulator VncR [Butyrivibrio crossotus DSM
           2876]
          Length = 217

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P++ ++ +   +  +D F + VD  + KP     + AR+ ++ ++  
Sbjct: 59  LEVLKEIRKKSFLPILILTAFSDEEYKIDAFTNLVDGYMEKPFSLPVLKARIDSLIKKNY 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++  
Sbjct: 119 GHLEMFEYKNLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKD 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +EA  + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 179 SEEAPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215


>gi|251788826|ref|YP_003003547.1| DNA-binding transcriptional regulator BaeR [Dickeya zeae Ech1591]
 gi|247537447|gb|ACT06068.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 243

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 7/172 (4%)

Query: 33  EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92
           E E W++         I   L+  G   L L R IR  S VP+I ++        L   +
Sbjct: 48  EVEPWVREHP---CQLILLDLMLPGRDGLTLCRAIRGFSNVPIIMVTARSDEIDRLLGLE 104

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGR-DPEVQGEVFPL 149
            G DD + KP   RE++ARV  + RR +  +     +  P  +    R      G    L
Sbjct: 105 IGADDYICKPYSPREVVARVKTLLRRCRWQHEPLPNDALPALLIDQNRYQASYLGRHLEL 164

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              E R+L+ L A  G+  ++ Q+   +Y  +   V +  ++SHI  LR+KL
Sbjct: 165 TPAEFRLLKTLSAEPGRVFSREQLLDHLYDDY-RVVTDRTIDSHIKNLRRKL 215


>gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 231

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N    + E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGIIRIRSVEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETVMNGEKLIHTVWGVGYKIE 230


>gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 248

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 7/134 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++    +   +     G DD V KP    E++AR+ AI RR   + +  + G +R
Sbjct: 86  TPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRRTHATQDEND-GIVR 144

Query: 133 VFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           V       D  +    G    L   E ++L YLM N G+ V+K QI   ++  +D   + 
Sbjct: 145 VADLVLDEDAHEVHRAGVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHVWE-YDWNGDA 203

Query: 188 NVVESHISKLRKKL 201
            +VES+IS LR+K+
Sbjct: 204 AIVESYISYLRRKI 217


>gi|213618641|ref|ZP_03372467.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 194

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K
Sbjct: 24  LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 83

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +    AE+ P+ +          G+   L   E R+L+ L    GK  ++ Q+ + 
Sbjct: 84  PQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNH 142

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           +Y  +   V +  ++SHI  LR+KL +
Sbjct: 143 LYDDY-RVVTDRTIDSHIKNLRRKLES 168


>gi|182412432|ref|YP_001817498.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839646|gb|ACB73898.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 269

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 34/240 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDG--VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L+ DRA   +    L  ++G  V      +  F   L       VS I A   G+   
Sbjct: 30  ILLVSDRAPRPESLAGLLVENGYLVFHLPLAADPFHPVLGVRPSLIVSEIPATFRGRDSW 89

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +L    R   + P++ +S   S    +     G DD + +P H  E+LARV A+ RR 
Sbjct: 90  LGQL---RRCGIRTPILLVSPTHSTADRIQGLQHGADDCLGQPFHPAELLARVQALLRR- 145

Query: 120 KVSNNRAETGPIRVFSDGR--------------DPEVQGEVFPLPRRERRILEYLMANRG 165
                   TGP+ + +  R              DP  Q     L R E   L+ L+  RG
Sbjct: 146 -------STGPLPLTAWVRFGPVVVDLRRMTTIDPRGQSR---LSRIECAFLDLLVHARG 195

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
           + V++ ++  AI+G  +     + V++H+ +LR+K+ +  G +P  + S   +GY +++ 
Sbjct: 196 RAVSRERLLRAIWGNVNPPASRS-VDTHVWRLRRKIGDT-GHEPHWIKSVPGVGYQLEYT 253


>gi|330977884|gb|EGH77787.1| two component transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 220

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 24/219 (10%)

Query: 8   RALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           +AL ++GY   +  DG S L    S  F+  +       +S  E            L R+
Sbjct: 18  QALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGFEV-----------LRRL 66

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
             + S +P++ ++   + +  +   DSG DD + KP    E+ AR+ A+ RR   S  RA
Sbjct: 67  RHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRR---SAGRA 123

Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E   IR+    +          L  +E ++L  L++  G+ + + ++   +YG ++
Sbjct: 124 KVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG-WN 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  E N +E HI  LRKK  + L    + + R +GY ++
Sbjct: 183 EEAESNTLEVHIHHLRKKFSSTL----IRTIRGVGYLVE 217


>gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus
           pseudintermedius ED99]
          Length = 233

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 10/171 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+  +E+ R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  
Sbjct: 58  GQDGMEVCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 117 RRL--------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           RR          +  N      I ++ D    + +GE   L  RE  +  YL  + G+ +
Sbjct: 118 RRHYTQPSQENHMQTNEITIKDIVIYPDAYSIKKRGEDIDLTHREFELFHYLSKHMGQVM 177

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            +  +   ++G +D   +   V+  I +LR+K+ +     D + ++R +GY
Sbjct: 178 TREHLLQTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPDYIVTRRGVGY 227


>gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 252

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 78  LEVAKSIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 137

Query: 121 -VSNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            VS +  E+          G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 138 LVSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 197

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 198 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 230


>gi|299536972|ref|ZP_07050277.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727552|gb|EFI68122.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 230

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 11/143 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I +S        +     G DD V KP H  E+LARV +  RR       +
Sbjct: 69  IREERNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQLGTYS 128

Query: 127 ETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E G  +V  DG       ++  ++GE   L   E +I E LM N G+  +  +I+  ++ 
Sbjct: 129 E-GATKVEIDGLVLDEEAKEVVLEGEPVRLTPIEYKITELLMKNAGRVFSIREIYERVWN 187

Query: 180 LFDEAVE-ENVVESHISKLRKKL 201
             +EA   EN+V  HI K+R+K+
Sbjct: 188 --EEAYNAENIVAVHIRKIREKI 208


>gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 222

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 20/218 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + L  +GY      DGV  EG +         S    D+  ++  L G  G +V    R 
Sbjct: 18  KGLTAEGYAVDVVHDGV--EGLHR-------ASEGAYDLVILDIMLPGMNGYRVCAALRA 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
             A   VP++ ++         +  D+G DD + KP  +  ++ARV A+ RR   S   +
Sbjct: 69  --AGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRHASGGAS 126

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E G +R+ +  R   +  +   L  +E  +LE L+   G+ V+K +I   ++  F  
Sbjct: 127 PVHEVGELRLDTAARRVFLTEDEISLTTKEFSVLEQLVLRAGEVVSKAEILEHVWD-FAY 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + N+VE +IS LR+KL   L    + + R  GY ++
Sbjct: 186 DGDPNIVEVYISTLRRKLGPTL----IKTVRGAGYRLE 219


>gi|227533256|ref|ZP_03963305.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189106|gb|EEI69173.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 232

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 4/155 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA + VP+I ++   + +  +    +G DD V KP    E+ AR+ A +RR      RA
Sbjct: 75  IRAITSVPIIFLTARVTDEDKVRGLGAGGDDYVTKPFSLAELGARIKAHFRRESQPQKRA 134

Query: 127 ETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                 ++  D R  +V    +V  L +++ +++E L  N G+  ++ Q++  I+G +D 
Sbjct: 135 RMAIFDQILIDYRAKQVSIGDQVLSLEKKQYQLVELLSLNPGQVFSREQLYEKIWG-YDA 193

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++ V+  HI ++R          P+++   +GY
Sbjct: 194 LGDDRVITEHIRRIRLLFDRYQVTSPIETVWGVGY 228


>gi|213021449|ref|ZP_03335896.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 228

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 4/178 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 7   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 64

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 65  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y
Sbjct: 125 LASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 182


>gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
 gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
          Length = 238

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++AR
Sbjct: 54  LMLPGVDGLEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIAR 113

Query: 112 VAAIYRR-------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           V A++RR       L +   R     + +    R+ +++GEV  L  RE  +L Y   + 
Sbjct: 114 VKALFRRQEAMGQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHP 173

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           G+  ++  +   ++G   E   E+ V +HI++LR K+
Sbjct: 174 GEVFSRLALLEQVWGYQHEGY-EHTVNTHINRLRSKI 209


>gi|271501522|ref|YP_003334548.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270345077|gb|ACZ77842.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 243

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 7/172 (4%)

Query: 33  EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92
           E E W++         I   L+  G   L L R IR  S VP+I ++        L   +
Sbjct: 48  EVEPWVREHP---CQLILLDLMLPGRDGLTLCRAIRGFSNVPIIMVTARTEEIDRLLGLE 104

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGR-DPEVQGEVFPL 149
            G DD + KP   RE++ARV  + RR +  +     +  P  +    R      G    L
Sbjct: 105 IGADDYICKPYSPREVVARVKTLLRRCRWQHEPLPNDVLPALLIDQNRYQASYLGRHLEL 164

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              E R+L+ L A  G+  ++ Q+   +Y  +   V +  ++SHI  LR+KL
Sbjct: 165 TPAEFRLLKTLSAEPGRVFSREQLLDHLYDDY-RVVTDRTIDSHIKNLRRKL 215


>gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens
           LL3]
          Length = 236

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 21/220 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY     D   + +G  ++E  E LQ     D+  ++  L  K    +E+ R +R 
Sbjct: 23  LRKEGY-----DVHCAYDGNEAVEMVEELQP----DLILLDIMLPNKDG--VEVCREVRK 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV------- 121
              +P+I ++   S    +   + G DD V KP   RE+LARV A  RR L V       
Sbjct: 72  KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLTVAPAEEES 131

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++N    G + +F D      + E   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 132 ASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-Y 190

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           D   +   V+  + +LR+K+  N    + + ++R +GY +
Sbjct: 191 DYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|189438905|ref|YP_001953986.1| response regulator [Bifidobacterium longum DJO10A]
 gi|296454575|ref|YP_003661718.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|32700051|gb|AAP86676.1| response regulator [Bifidobacterium longum subsp. infantis]
 gi|189427340|gb|ACD97488.1| Response regulator [Bifidobacterium longum DJO10A]
 gi|296184006|gb|ADH00888.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 240

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 36/218 (16%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGISD 80
           LE E +   +  + + A+E F I K + +L           E+ R IRA S VP+I ++ 
Sbjct: 21  LENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTEVARRIRATSNVPIIMLTA 80

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---------------VSNNR 125
                  +   ++G DD V KP    E+LAR+ A +R  K                + N 
Sbjct: 81  KSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKPAAEDGATGGASGGNANVNH 140

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E GPI +          G+   L   E  +L  L A  G+ ++++ +   ++G ++ + 
Sbjct: 141 LERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEAISRSSLLKNVWG-YENSG 199

Query: 186 EENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +  +V  H+ +LR K+ +    DP     V + R +GY
Sbjct: 200 DTRLVNVHVQRLRAKVED----DPENPQIVQTVRGIGY 233


>gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes]
          Length = 237

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 16/189 (8%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
            + +G  +LE  E +Q     D+  ++  L G+    +E+ R +R    +P+I ++   S
Sbjct: 32  CAYDGDEALELVEEVQP----DLILLDIMLPGRDG--IEVCREVRKKYDMPIIMVTAKDS 85

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET--------GPIRVF 134
               +   + G DD V KP  +RE++ARV A  RR  +VS++ AE         G + + 
Sbjct: 86  EIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQVSSSTAEEEENSELEIGSLIIH 145

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D      +GE   L  RE  +L YL  + G+ + +  +   ++G +D   +   V+  +
Sbjct: 146 PDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREHLLQTVWG-YDYFGDVRTVDVTV 204

Query: 195 SKLRKKLRN 203
            +LR+K+ +
Sbjct: 205 RRLREKIED 213


>gi|320638620|gb|EFX08325.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
           G5101]
          Length = 229

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLLYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+   +
Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDIV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|307294693|ref|ZP_07574535.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879167|gb|EFN10385.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 235

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 22/174 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R +R  S +P+I ++              G DD ++KP   R ++AR+ AI RR +
Sbjct: 62  LELLRRLREKSHMPVIFLTSKADELDEALGLAMGADDYISKPFSQRLLIARIRAILRRAE 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER---------------RILEYLMANRG 165
           VS  +A+  P    +   +P V+G +   P R R                ILE L A  G
Sbjct: 122 VS--KADASPDEPVA---EPIVRGRLEMDPARHRVKWMGRDVTLTVTEFLILETLAARPG 176

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
               + Q+  A Y   D  V++  ++SHI +LR+K R     F+ +D+    GY
Sbjct: 177 VVKNRNQLMDAAYQ-DDVYVDDRTIDSHIKRLRRKFRETDPEFNAIDTLYGAGY 229


>gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 233

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 4/116 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           G DD V KP +  E+ AR+ A+ RR++   + + +  +GP  +   G     +GE   L 
Sbjct: 100 GADDYVVKPFNPLELTARIRAVLRRIRKAGLEDEKISSGPFMLDLKGHRVLKKGEELDLT 159

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            RE  ++   M N GK  ++ +I +A++G  D   +   V+ HI +LR+K+ +  G
Sbjct: 160 PREFDLMALFMKNPGKAFSRDEILNAVWGA-DYVGDPKTVDVHIRRLREKVEDDPG 214


>gi|312197790|ref|YP_004017851.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229126|gb|ADP81981.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 229

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 17/171 (9%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA  +  P++ +S    +   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVCRRLRAAERWAPVLMLSARGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRR-- 118

Query: 121 VSNNRAETGPIRVFSDG--RDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                A+  P+ +  DG   DP V+     G    L  +E  +LEYLM + G+ +++T I
Sbjct: 119 ----GAQERPVVLDIDGLRLDPTVRAASRDGVELDLSPKEFALLEYLMRHPGQVLSRTTI 174

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              ++ L +D     NVV+ +++ LR+K+    G   +++ R  GY +  N
Sbjct: 175 LDHVWDLAYDR--NSNVVDQYVAYLRRKIDKPFGVAQLETVRGAGYRLRVN 223


>gi|262173228|ref|ZP_06040905.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|261890586|gb|EEY36573.1| DNA-binding response regulator [Vibrio mimicus MB-451]
          Length = 218

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    +   +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 63  LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 119

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 120 SGSAEELISVGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE   +N +E HI  LRKKL + L    + + R +GY I+
Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKKLPDNL----IKNVRGVGYMIE 217


>gi|253687171|ref|YP_003016361.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753749|gb|ACT11825.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 226

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 11/204 (5%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF++   L  +E +  +   D +A+   ++      +++ R IR   Q+P+I ++    
Sbjct: 23  EGFSTSRVLTGKEGVDGAMSGDYTAMILDVMLPDMSGIDVLRQIRKTQQLPVIMLTARGD 82

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDG 137
               +   + G DD + KP + RE++AR+ A+ RR       K   + A +G + +    
Sbjct: 83  NIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYDDQPSTKRDESVAASGDLVLNPAT 142

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R  E +G+ F L   E  +LE L+ +  + V+K ++     G   EA + + V+ HIS +
Sbjct: 143 RISEWRGQPFDLTASEFNLLELLLRSPERVVSKDELSEKCLGRRREAYDRS-VDVHISNI 201

Query: 198 RKKLRNKLGFD-PVDSKRFLGYSI 220
           R+KL    G    +++ R +GY I
Sbjct: 202 RQKLSALPGSTMTIETVRSVGYRI 225


>gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271]
 gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271]
          Length = 231

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQMISTYEVDLMVLDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N   ++ E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSSKNEDGIIRIRSAEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|257126201|ref|YP_003164315.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050140|gb|ACV39324.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 215

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 13/159 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S+VP+I +S   +++  +D   SG  D V KP    E+ AR+    R+ K+
Sbjct: 64  EVCKNVRKISKVPIIVVSAKNNVEEKVDLLKSGASDYVTKPFDFLELEARININIRKEKI 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S    +T  + +    ++  +  E  P  L + E  +++ L+ N+ + V + +I   I+G
Sbjct: 124 SQITYKTLTLNL----QNYSLYLENVPILLTKTEFELVKLLIENKEEIVLRDKIIEKIWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                  +N+++S I    KK+R KLG + + + R +GY
Sbjct: 180 W---EASDNLLDSTI----KKIRQKLGKEKIKTVRGIGY 211


>gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto
           BEST195]
 gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 236

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 21/220 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY      DG       ++E  E LQ     D+  ++  L  K    +E+ R +R 
Sbjct: 23  LRKEGYEVHCAHDG-----NEAVEMVEELQP----DLILLDIMLPNKDG--VEVCREVRK 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--------KV 121
              +P+I ++   S    +   + G DD V KP   RE+LARV A  RR         + 
Sbjct: 72  KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLTTAPAEEEP 131

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+N    G + +F D      + E   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 132 SSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-Y 190

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           D   +   V+  + +LR+K+  N    + + ++R +GY +
Sbjct: 191 DYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|194446630|ref|YP_002041403.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194405293|gb|ACF65515.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 240

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K    +    AE+ P+ +          G+   L   E R+L+ L    GK  
Sbjct: 122 KNILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|159904286|ref|YP_001551630.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159889462|gb|ABX09676.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 269

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 23/174 (13%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S VP+I +S   ++   +   D G DD ++KP   +E+ AR+A I RR+     
Sbjct: 88  RRIRGESIVPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPGAS 147

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    V     + G + V ++ R     GE   L   E  +LE L  + GK V + 
Sbjct: 148 SVAEPREIPVGQGVMKLGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFRDPGKVVPRA 207

Query: 172 QIFSAIYGLFD-EAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219
           +I   ++G     A +  VV+ ++++LR KL      DP     + + R +GYS
Sbjct: 208 EILEQLWGYPPRRAADLRVVDVYVARLRGKLEP----DPRNPELILTVRGIGYS 257


>gi|61968688|gb|AAX57187.1| Aur1P [Streptomyces aureofaciens]
          Length = 256

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 10/160 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA  ++P+I ++   S    +    +G DD + KP   RE++AR+ A+ RR + 
Sbjct: 99  EVCRGIRAAHEIPVIAVTARGSELDRVLGLQAGADDYLAKPYGFRELMARMEAVMRRARP 158

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +     T   GP+ + S  R+  + G      R+E  +L  L ++    + +  +   ++
Sbjct: 159 TRPAFATITCGPLSIDSGTREVTLDGVPVETTRKEFDMLYLLASHPDTVIPRKMLMQQVW 218

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G   ++     V++H+S     LRNK+G   + + R +G+
Sbjct: 219 G---DSWSRRTVDTHVS----TLRNKIGAGWIITIRGVGF 251


>gi|218702777|ref|YP_002410406.1| DNA-binding transcriptional regulator BasR [Escherichia coli IAI39]
 gi|300940585|ref|ZP_07155153.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|331650141|ref|ZP_08351214.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M605]
 gi|56540585|gb|AAV92746.1| PmrA [Escherichia coli]
 gi|56540587|gb|AAV92747.1| PmrA [Escherichia coli]
 gi|56540591|gb|AAV92749.1| PmrA [Escherichia coli]
 gi|56540593|gb|AAV92750.1| PmrA [Escherichia coli]
 gi|56540595|gb|AAV92751.1| PmrA [Escherichia coli]
 gi|56540639|gb|AAV92773.1| PmrA [Escherichia coli]
 gi|56540641|gb|AAV92774.1| PmrA [Escherichia coli]
 gi|218372763|emb|CAR20641.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli IAI39]
 gi|281181203|dbj|BAI57533.1| two-component response regulator [Escherichia coli SE15]
 gi|300454642|gb|EFK18135.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|330908446|gb|EGH36965.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           AA86]
 gi|331041086|gb|EGI13243.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M605]
          Length = 222

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E  QS      S +   L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ 
Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IY  +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219


>gi|75675389|ref|YP_317810.1| two-component transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74420259|gb|ABA04458.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 238

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----- 127
            P++ +S    +   +    +G DD + KP    E+LARV  + RR      RAE     
Sbjct: 87  TPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRR---HGGRAEETLYR 143

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            G + +    R     GE   L  RE R+LEYLM + G+ V +T +   ++   FD   +
Sbjct: 144 VGDLELDRLSRRVARGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFDP--Q 201

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            NV++ HIS+LR K+        + + R  GY +
Sbjct: 202 TNVIDVHISRLRSKIDKGFEQPLLHTIRGAGYMV 235


>gi|65317712|ref|ZP_00390671.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 209

 Score = 55.5 bits (132), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 35  IEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 94

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN   +      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 95  VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 154

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 155 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 190


>gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 306

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 7/145 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-N 123
           R+  A   VP + ++   + Q  +     G DD V KP    E++ARV AI RR      
Sbjct: 143 RLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGSPVT 202

Query: 124 NRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 P+R      DP  +     G +  L   E R+L++L+AN    + + Q+   ++
Sbjct: 203 GDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLDHVW 262

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
           G  D + E  V+E++IS LR+K+ N
Sbjct: 263 G-HDFSGEGGVLETYISYLRRKVDN 286


>gi|161502712|ref|YP_001569824.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864059|gb|ABX20682.1| hypothetical protein SARI_00761 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 240

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 4/154 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             I RR K      +     P+ +          G+   L   E R+L+ L    GK  +
Sbjct: 122 KTILRRCKPQRELQQLDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 182 REQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|92118478|ref|YP_578207.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801372|gb|ABE63747.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 230

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 24/178 (13%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-A 113
           G G+ VL   R +R  S VP+I +S        +D  D G DD VNKP +  E++AR+  
Sbjct: 62  GDGKDVL---RRVREWSDVPVIVLSARDREAEKIDSLDLGADDYVNKPFNVGELMARMRT 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANR 164
           A+  RL+     AET  +R      D EV          G    L  +E  +L +L  N 
Sbjct: 119 ALRHRLQ---RNAETPSLR----AGDLEVDVVRHRAMRAGVELKLTPKEFELLSFLAKNA 171

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           G+ +   QI +A++G+   A +   +  +I +LR+K+ +K   DP  + ++  +GY I
Sbjct: 172 GRVLTHRQILAAVWGVAHTA-DTQYLRVYIGQLRQKIEDK-ADDPRIILTEPGIGYRI 227


>gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
          Length = 234

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 20/202 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LVK+GY           E F + + EE L+     +   I   L+      LE+ R +R 
Sbjct: 21  LVKEGY-----------EVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLEVAREVRK 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128
              +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +   AE  
Sbjct: 70  THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATNAKEAEVT 129

Query: 129 -------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  D      +GE   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 130 TQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHLLQTVWG-Y 188

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D   +   V+  + +LR+K+ +
Sbjct: 189 DYFGDVRTVDVTVRRLREKIED 210


>gi|307264989|ref|ZP_07546550.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919974|gb|EFN50187.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 229

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 11/116 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG-------EV 146
           G DD + KP + RE++ARV A+ RR+   N  +++  +  + + +   +Q        EV
Sbjct: 94  GADDYITKPFNPRELVARVRAVIRRVYEFNASSKSINLLEYDEIKLDLIQNKAFVRGKEV 153

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN-VVESHISKLRKKL 201
           F  P RE +IL+ LM NR K V + ++ ++I+G  D  +E+   ++ HI +LR+K+
Sbjct: 154 FLTP-REFQILKMLMTNRKKVVKREELIASIWG--DSFIEDTKTLDVHIRRLREKI 206


>gi|291486019|dbj|BAI87094.1| hypothetical protein BSNT_05286 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 237

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR  S  P+I IS        +   ++G DD + KP H   ++A++ ++ RR      
Sbjct: 65  RQIRTISNAPIIFISARIDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYS 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L   +   E G + ++ D  + E         ++E ++L   +    K V++ ++  A
Sbjct: 125 PSLPQESRIVELGGLTIYPDQNEAEWNSSRILFSQKEFQLLSIFVREHKKIVSRDELLEA 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   D  V++N +  ++++LR+KL N    D + + R  GY    N
Sbjct: 185 LWDDVD-FVDDNTLTVNVNRLRRKLENAGLKDCISTIRGQGYQFQVN 230


>gi|271966751|ref|YP_003340947.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509926|gb|ACZ88204.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 228

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 8/146 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R++RA S VP+I  +        +   D+G DD V KP     + AR+ A+ RR +
Sbjct: 61  CEVLRMLRAVSAVPVIVATARDDEPEIVRALDAGADDYVVKPFSAAHLDARIRAVLRRGR 120

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++    T P+RV        GR+  + G    L  +E  +L YL A  G+ V+K ++ +
Sbjct: 121 DADE--GTAPVRVGGLLIEQAGREAFLDGVRLDLTPKEFDLLHYLAARPGQVVSKRELLT 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++ +     ++  V+ H+S LR+KL
Sbjct: 179 EVWRMAYGGADKT-VDVHLSWLRRKL 203


>gi|258423936|ref|ZP_05686820.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|282902536|ref|ZP_06310429.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           C160]
 gi|282917981|ref|ZP_06325731.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus D139]
 gi|282921200|ref|ZP_06328918.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus C427]
 gi|283767707|ref|ZP_06340622.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|257845843|gb|EEV69873.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|282315615|gb|EFB45999.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus C427]
 gi|282318266|gb|EFB48626.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus subsp. aureus D139]
 gi|282596995|gb|EFC01954.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           C160]
 gi|283461586|gb|EFC08670.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus H19]
          Length = 221

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I IS        +     G DD + KP +    +A++ A+ RR   L V+N
Sbjct: 66  IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +        +  D      Q +   L   E +IL+ L  N  K V++T +    +   + 
Sbjct: 126 DSMTVKGCTLILDEAKVVYQEQNIQLSLTELQILKLLFQNEDKYVSRTALIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +++N +  ++++LRKKL N +G  D + +K+ +GY +
Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221


>gi|269957767|ref|YP_003327556.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269306448|gb|ACZ31998.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 231

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 5/177 (2%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           D++ ++  L   G   +EL R IR+   VP++ ++     +  +   ++G DD V KP  
Sbjct: 50  DLAVLDVML--PGASGIELCRRIRSRLDVPVLLLTARGETEDRIAGLEAGADDYVPKPFS 107

Query: 105 HREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
            RE+  R  A+ RR    +   +    GP+RV    R     GEV  L   E R+L  L 
Sbjct: 108 PREVALRAQALVRRTGARHEPRDVVVNGPVRVDVLRRTLTSGGEVVHLSELETRLLATLA 167

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              G+ V    + + ++     A    +V++ + ++R++L  + G   V + R  GY
Sbjct: 168 ERAGEVVTWRDLLNDVWSTASVAGGREMVKTAVYRVRQRLPERAGEPLVVTVRGRGY 224


>gi|210631702|ref|ZP_03296969.1| hypothetical protein COLSTE_00854 [Collinsella stercoris DSM 13279]
 gi|210159961|gb|EEA90932.1| hypothetical protein COLSTE_00854 [Collinsella stercoris DSM 13279]
          Length = 174

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 66/152 (43%), Gaps = 17/152 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I IS        +   D+G DD + KP    E+LARV A  RR  ++   A
Sbjct: 12  VRGWSAVPIIVISARTEDSDKIGALDAGADDYLTKPFSVEELLARVRASLRRSGMAGAGA 71

Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GP+ +        + GE   L   E ++L  L  N GK +  T I   I+G 
Sbjct: 72  AESSTFDNGPLHIDFAAGCATLAGEELQLTPTEYKLLALLAKNVGKVLTHTFITHEIWG- 130

Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDP 209
                     +S I+ LR   + LR K+  DP
Sbjct: 131 -------TSWDSDIASLRVFMRTLRKKIEADP 155


>gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1]
 gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1]
 gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 234

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 22/201 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L  +GY  L  +DG           EE L+   + +V  I   ++      + +   +R 
Sbjct: 23  LKNEGYRVLQAEDG-----------EEGLELLKKNEVHLIVLDIMMPKIDGIHMCMKVRE 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVS 122
            +++P+I +S        +    +G DD V KP +  E++AR+ +  RR       + V 
Sbjct: 72  IAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKMNGGISVQ 131

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           N N  E G +++        +  +V  L  RE  ILE L  N+G  ++  QI+  ++   
Sbjct: 132 NENEVEIGDMKINVTTHKVTIADQVVKLTPREFAILELLARNQGMVMSAEQIYERVWK-- 189

Query: 182 DEAVE-ENVVESHISKLRKKL 201
           +EA + +N V  HI K+R+K+
Sbjct: 190 EEAFQSDNTVMVHIRKIREKI 210


>gi|16223977|gb|AAL15573.1|AF233755_11 putative response regulator [Bacillus subtilis]
          Length = 220

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           L + IR     P++ ++     +  ++   +G DD + KP    E+ ARV A  RR    
Sbjct: 62  LCKQIRPLVDCPILFLTAKTEEEAIVNGLITGGDDYITKPFGIMELSARVNAHLRREHRE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  + R  +G +  F D ++  +      L + E +I E+L  N+G+  ++ QI+  IYG
Sbjct: 122 KHQSKRVISGFLFHF-DSKEVFINNHKLNLTKNEYKICEFLAQNKGRIFSREQIYEEIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   A+   + E  I  +RKK +     DP+ +   +GY
Sbjct: 181 IEGNALYSTITE-FIRTIRKKCKEH-NADPIKTIWGVGY 217


>gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF
 gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis]
 gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis]
 gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 235

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 21/220 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY      DG       ++E  E LQ     D+  ++  L  K    +E+ R +R 
Sbjct: 22  LRKEGYEVHCAHDG-----NEAVEMVEELQP----DLILLDIMLPNKDG--VEVCREVRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--------KV 121
              +P+I ++   S    +   + G DD V KP   RE+LARV A  RR         + 
Sbjct: 71  KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLTTAPAEEEP 130

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+N    G + +F D      + E   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 131 SSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-Y 189

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           D   +   V+  + +LR+K+  N    + + ++R +GY +
Sbjct: 190 DYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 229


>gi|323485055|ref|ZP_08090408.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323693570|ref|ZP_08107773.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
 gi|323401611|gb|EGA93956.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323502378|gb|EGB18237.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
          Length = 230

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 27/201 (13%)

Query: 40  SSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTL 88
           + AR+ +  I AF   + + +L    LP+I        IR  S +P+I I+   S +  +
Sbjct: 29  AVARDGLEGITAFQKDRYDLILLDIMLPKIDGFAVCELIRKESNIPVIMITALSSEEEQV 88

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP--------IRVFSDGRDP 140
              D   DD + KP     ++ ++AA+ RR   S   A+ G         + +  D    
Sbjct: 89  RGLDLLADDYITKPFSMPVLIRKIAAVLRR---SGRGAKAGENQKLIYRDLCLDLDNYQT 145

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
            V GE   L +RE  IL  L+ ++GK + +  +   ++  ++    + VV++HI  LR+K
Sbjct: 146 FVDGEPVALTKREFEILRELLNHQGKVMTREILLEKLWK-YEFYGNDRVVDNHIKNLRRK 204

Query: 201 LRNKLGFDPVDSKRFLGYSID 221
           L      D +++ + +GY ID
Sbjct: 205 LER----DYIETVKGIGYRID 221


>gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 219

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           ++P+I ++   + +  +    +G DD + KP    E+LARV  + RR + + +R + G +
Sbjct: 71  EIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRRCQKTESRLKEGDL 130

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    R  + QG+   L  +E  +L  L+ N+   + +  I+  I+G      +   V+
Sbjct: 131 EIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKIWG-SGYMGDSRTVD 189

Query: 192 SHISKLRKKL 201
            H+ +LRKK+
Sbjct: 190 LHVQRLRKKI 199


>gi|307825786|ref|ZP_07656002.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307733094|gb|EFO03955.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 228

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 17/155 (10%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           KG +VL     IR  S++P++  +        +   +SG DD V KP   RE+ AR+ AI
Sbjct: 59  KGTEVLMR---IRMESRIPVLMFTARGDDVDRIIGLESGADDYVPKPCTPRELAARIRAI 115

Query: 116 YRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            RR +     V N     GP++++S+ R      +   L   E  +LE L  N G+ V K
Sbjct: 116 LRRTQSVSDAVGNGPIVAGPLKIWSEKRKASWFDQDMDLTSTEFNLLETLAMNVGRIVTK 175

Query: 171 TQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
            ++     G     FD +     ++ H+S +R+KL
Sbjct: 176 NELSEKALGRPLARFDRS-----IDVHMSSIRQKL 205


>gi|296273568|ref|YP_003656199.1| winged helix family two component transcriptional regulator
           [Arcobacter nitrofigilis DSM 7299]
 gi|296097742|gb|ADG93692.1| two component transcriptional regulator, winged helix family
           [Arcobacter nitrofigilis DSM 7299]
          Length = 229

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 3/151 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIR 132
           P++ I+    ++     F  G DD + KPI  +E++ RV A+ RR K++N N+   G   
Sbjct: 75  PILMITAKNQMEDIEKGFRLGTDDYMIKPIQLKEMVLRVNALLRRAKIANENKLVIGKSF 134

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +        +  + + LP +E  +L  L++   K   + +I + I+GL  EA +E  V+S
Sbjct: 135 LDYKALKINIDSKEYDLPPKEFYLLFLLLSYPDKIFTRYEIMNEIWGLESEA-DERTVDS 193

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           HI KLR++      F+ V + R LGY   ++
Sbjct: 194 HIKKLRRRFEACQDFEIV-TIRGLGYKAKYH 223


>gi|282878424|ref|ZP_06287210.1| response regulator receiver domain protein [Prevotella buccalis
           ATCC 35310]
 gi|281299410|gb|EFA91793.1| response regulator receiver domain protein [Prevotella buccalis
           ATCC 35310]
          Length = 231

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 69/136 (50%), Gaps = 6/136 (4%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           + +P+I ++   +   T+  F+ G DD ++KP   RE+L R+ A+ RR   +++  E   
Sbjct: 77  ASIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRIRAVIRRTNETDDHTEPKT 136

Query: 131 IRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           ++        D +   + GE  P  + E  +L   ++ +G   ++ ++   I+   D  V
Sbjct: 137 LKYQGLEMDLDKKTVTIDGENVPFTKTEFELLHLFLSEKGHVFSRQELIDRIWPK-DVLV 195

Query: 186 EENVVESHISKLRKKL 201
            +  V+ +I++LRKK+
Sbjct: 196 LDRTVDVNITRLRKKI 211


>gi|262041138|ref|ZP_06014355.1| two component response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041512|gb|EEW42566.1| two component response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 223

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D AL+  G I     +G   +G ++    E   S A    S I   L    E  L
Sbjct: 3   ILVIEDDALLLQGLILAMQSEGYVCDGVST--AHEAALSLASNHYSLIVLDLGLPDEDRL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L R+ R     P++ ++   +L+  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLSRMRREKMTQPVLILTTRDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N    G +R+    R   +      L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR+    K+G   + + R  GY +  N
Sbjct: 181 -WDNEPATNTLEVHIHNLRE----KIGKSRIRTVRGFGYMLANN 219


>gi|225569825|ref|ZP_03778850.1| hypothetical protein CLOHYLEM_05919 [Clostridium hylemonae DSM
           15053]
 gi|225161295|gb|EEG73914.1| hypothetical protein CLOHYLEM_05919 [Clostridium hylemonae DSM
           15053]
          Length = 246

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 21/169 (12%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I ++   S    L   + G DD + KP +   +LA +  +  R+K  
Sbjct: 88  ICREIRRQSDIPVIVVTSSDSDMDELMSLNVGADDFITKPYNIHILLAHIGTVLHRVK-- 145

Query: 123 NNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 GP R F            G     +G+   L + E  IL+YLM + G  V++ +
Sbjct: 146 ------GPGRSFVITHKGLSLDVLGSSASHRGKKADLTKNELGILKYLMEHAGAVVSRNE 199

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +   ++ + +E +E++ +  ++++LR+KL + +G D  + +KR  GY +
Sbjct: 200 LICHMWEM-EEFIEDSTLTVNVNRLRRKLSD-IGLDDYLLTKRGQGYMV 246


>gi|254425350|ref|ZP_05039068.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192839|gb|EDX87803.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 243

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 11/153 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +RA S VP+I  +   S    +   + G +D + KP   +E++AR+ +I RR        
Sbjct: 75  LRATSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSILRRAARRQEHV 134

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V  +  E G   + S  R   ++G    L   E R++E L +  G   ++  I  A+
Sbjct: 135 SGVVHRSAIEIGQFVIDSSTRRAYIEGHNLRLTEIEFRLIELLASRPGHIFSRGDILEAL 194

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +G   + A +   V+ HIS+LR KL N+   +P
Sbjct: 195 WGYDANSAADTKTVDVHISRLRIKL-NETTHNP 226


>gi|187777151|ref|ZP_02993624.1| hypothetical protein CLOSPO_00696 [Clostridium sporogenes ATCC
           15579]
 gi|187774079|gb|EDU37881.1| hypothetical protein CLOSPO_00696 [Clostridium sporogenes ATCC
           15579]
          Length = 227

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 21/208 (10%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP--------RIIRAHSQVPLIG 77
            N  EFE    +  ++    IE FL  K + VL    LP        + IR  S+ P+I 
Sbjct: 24  LNKWEFE---VNVCKDFEKIIECFLKYKPDVVLMDINLPVCDGFYWCKKIRQISKTPIIF 80

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRV 133
           +S   S    +   ++G DD + KP +   ++A++ AI RR     N      +   + +
Sbjct: 81  VSSRDSNMEIVMAINNGGDDFIQKPFNSEVLIAKLQAIIRRTYEYKNEEAKVLKCDDLLL 140

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D        +   L + E  +L+ LM N+GK V+++++   ++   D  V EN +  +
Sbjct: 141 NLDNATLLYNEKSLELTKNEMLLLKTLMENKGKGVSRSKLMKKLWD-DDIYVNENTLTVN 199

Query: 194 ISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           I++LR +L  K G  D + +++ +GY I
Sbjct: 200 INRLRNRLE-KFGIKDLIVTQKGIGYII 226


>gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 237

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN   +      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIET----DPSNPK 218


>gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 244

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ S    
Sbjct: 71  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKSGANG 130

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   IR+ ++ R      E   L   E  +LE L++  G+  ++ +I   ++G
Sbjct: 131 IPSSGVIQINSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRNKLG 206
              E  V+  VV+ HIS+LR KL +  G
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLEDDPG 218


>gi|23097812|ref|NP_691278.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776036|dbj|BAC12313.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 256

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL  +++  + +P+I ++        +   D G DD + KP   RE+++R+  + RR + 
Sbjct: 82  ELCEMVKRKADIPVIFLTVVDDEVNVVMGLDMGADDYITKPFRIRELISRIKTVLRRYEK 141

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIF 174
           S  N+ +   +          ++G+V+       L   E R+L   + +RG+ +++ Q+ 
Sbjct: 142 SKPNKEQLSSVISIGSINIHTLEGKVYKETEEILLTALEYRLLMIFVNHRGQVLSRKQLL 201

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
             I+ +  + V +N +  +I +LRKK+        V ++ R +GY
Sbjct: 202 QLIWDIAGDFVNDNTLTVYIKRLRKKIEEDAQHPTVIETVRGMGY 246


>gi|153947537|ref|YP_001400292.1| CpxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|152959032|gb|ABS46493.1| transcriptional regulatory protein CpxR [Yersinia
           pseudotuberculosis IP 31758]
          Length = 227

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 15/167 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR +   N
Sbjct: 64  RQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFEEQPN 123

Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + T       G + +    R  E QG+ F L   E  +LE L+ +  + V K ++    
Sbjct: 124 LSATESSIITQGGLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDELSDKG 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR----NKLGFDPVDSKRFLGYSI 220
            G   EA + + V+ HIS +R+KL     N L  + V   R +GY I
Sbjct: 184 LGRPREAYDRS-VDVHISNIRQKLAALPGNHLNIETV---RSIGYRI 226


>gi|326795781|ref|YP_004313601.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546545|gb|ADZ91765.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 232

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 15/162 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S VP+I ++        +   + G DD ++KP + RE+LAR+ AI RR     +  
Sbjct: 67  IRAKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRATQEKDDD 126

Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-- 179
               I +         R   V GE+  L   E  +LE L+   G+ + K ++     G  
Sbjct: 127 PMTDIDMSGVLLRRKDRTVHVTGELVELTTSEYTLLECLLMVPGQVLTKQELSEKALGRK 186

Query: 180 --LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
             ++D +     ++ HIS LRKK+ N    +P + + R +GY
Sbjct: 187 LTMYDRS-----LDMHISNLRKKIGNLESGEPRIKTVRGVGY 223


>gi|294341687|emb|CAZ90106.1| Putative two-component regulatory response regulator receiver
           precursor, CHEY-like [Thiomonas sp. 3As]
          Length = 249

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 4/161 (2%)

Query: 45  DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D   ++  L G  G  VL   R+    +  P+I ++   +    +   +SG DD + KP+
Sbjct: 52  DACLLDWMLPGLSGPDVLCRLRLQLGANVPPVIFLTGRNAETDVVQALESGADDYLVKPL 111

Query: 104 HHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
               +LAR+ A+ RR    +   R   G I      R   VQGE   L  RE  +  + +
Sbjct: 112 SRPVLLARLQAVLRRSGSTLPAARLRLGEIEADCSRRQIFVQGERVELTDRETDLALHFL 171

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            N  + + +  +   I+GL  E VE   V+ H+S LR+KLR
Sbjct: 172 QNVNRLLTRDFLIQTIWGLRPE-VETRTVDVHVSALRRKLR 211


>gi|269960945|ref|ZP_06175315.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834385|gb|EEZ88474.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 229

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 20/221 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + LV+ GY+  +  DGV  +G      E +       D+  ++  L    G +VL   R 
Sbjct: 18  KGLVESGYVVDWVRDGV--DGLYHATSEPY-------DLILLDIMLPKLDGWQVLNTLRS 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-----RLKV 121
              H+  P+I ++    ++  +  F+ G +D V KP    E+LAR+  ++R     R++ 
Sbjct: 69  SDIHT--PVIMLTAKEQIEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHTSSRVQT 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           S+   +   + +    R     G+   L  +E  +LE LM   G+ +++T I S ++ + 
Sbjct: 127 SSQTLQIADLELDMMKRVATRGGQSITLTAKEYALLELLMRKEGQVLSRTTIASLVWDMN 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + NV++  I +LR K+        + + R +GY ++
Sbjct: 187 FDS--DTNVIDVAIKRLRNKVDKPFETPLIHTIRGMGYKLE 225


>gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041]
 gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041]
          Length = 229

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 78/148 (52%), Gaps = 9/148 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S +P++ +S   +    +    SG DD V KP +  E++ARV ++ RR +
Sbjct: 61  MEVIKQIRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTQ 120

Query: 121 --VSNNRAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
             V+N++ +    GP+ +  D  + + ++G+V  L   E  IL YL+A+   RV +   I
Sbjct: 121 GEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGIL-YLLASHPNRVFSADDI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
           F  ++   +  V    V  H+S LR K+
Sbjct: 180 FERVWQQ-ESVVSAKTVMVHVSHLRDKI 206


>gi|217970326|ref|YP_002355560.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507653|gb|ACK54664.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 221

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 21/213 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIR 68
           LV +GY      DG+  +G +       L ++   D   ++  L GK G  VL   R   
Sbjct: 20  LVAEGYAVDLARDGI--DGAH-------LGATEPYDAVILDLGLPGKPGLTVLREWRA-- 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127
           A ++VP++ ++        ++   +G DD + KP H  E+LAR+ A+ RR   V +    
Sbjct: 69  AANRVPVLILTARDGWAERVEGLQAGADDYLGKPFHVEELLARIQALLRRAAPVPDTELR 128

Query: 128 TGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            G  R   + R   V   G    L   E R+L Y M +  + ++KT++   +Y  +D   
Sbjct: 129 AGDWR-LDEARQCLVDRAGNEQALTATEFRLLRYFMRHPDEVLSKTRLSEHVYD-YDAER 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + NV+E ++    ++LR  LG + ++++R  GY
Sbjct: 187 DSNVIEVYV----RRLRGLLGNERIETRRGQGY 215


>gi|118477989|ref|YP_895140.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196032258|ref|ZP_03099672.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196043485|ref|ZP_03110723.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903730|ref|YP_002451564.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225864581|ref|YP_002749959.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228927655|ref|ZP_04090706.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229091597|ref|ZP_04222802.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|229122134|ref|ZP_04251349.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|229184827|ref|ZP_04312019.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|301054140|ref|YP_003792351.1| response regulator [Bacillus anthracis CI]
 gi|118417214|gb|ABK85633.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|195995009|gb|EDX58963.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025794|gb|EDX64463.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218535758|gb|ACK88156.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225790696|gb|ACO30913.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228598632|gb|EEK56260.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228661260|gb|EEL16885.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228691746|gb|EEL45496.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228831999|gb|EEM77585.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|300376309|gb|ADK05213.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 235

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 65  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV +   E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 125 PKVEDRMVEQQGLCLYPERLVLKLRNQEIDITRNEAILLEMLMKNYPRVVSREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     D +++ R +GY   I W+
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIEDAIETIRSVGYRLHITWD 230


>gi|82779650|ref|YP_405999.1| DNA-binding response regulator CreB [Shigella dysenteriae Sd197]
 gi|170021642|ref|YP_001726596.1| DNA-binding response regulator CreB [Escherichia coli ATCC 8739]
 gi|253774972|ref|YP_003037803.1| DNA-binding response regulator CreB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164324|ref|YP_003047434.1| DNA-binding response regulator CreB [Escherichia coli B str.
           REL606]
 gi|293417871|ref|ZP_06660493.1| two-component system [Escherichia coli B185]
 gi|297517068|ref|ZP_06935454.1| DNA-binding response regulator CreB [Escherichia coli OP50]
 gi|300918114|ref|ZP_07134726.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300930636|ref|ZP_07146025.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300947478|ref|ZP_07161662.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300955637|ref|ZP_07167992.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|309787378|ref|ZP_07681990.1| transcriptional regulatory protein creB [Shigella dysenteriae 1617]
 gi|81243798|gb|ABB64508.1| catabolic regulation response regulator [Shigella dysenteriae
           Sd197]
 gi|169756570|gb|ACA79269.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|242379919|emb|CAQ34756.1| CreB transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253326016|gb|ACT30618.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976227|gb|ACT41898.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli B str. REL606]
 gi|253980384|gb|ACT46054.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli BL21(DE3)]
 gi|291430589|gb|EFF03587.1| two-component system [Escherichia coli B185]
 gi|300317474|gb|EFJ67258.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300414698|gb|EFJ98008.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300452912|gb|EFK16532.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300461487|gb|EFK24980.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|308924956|gb|EFP70451.1| transcriptional regulatory protein creB [Shigella dysenteriae 1617]
 gi|323939784|gb|EGB35986.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
          Length = 229

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+    +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQAPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|326804087|ref|YP_004321905.1| response regulator receiver domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651342|gb|AEA01525.1| response regulator receiver domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 230

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 79/154 (51%), Gaps = 15/154 (9%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           KG++VL+    IR  SQ+P+I ++         D+   G +D + KP +++E+LAR+   
Sbjct: 58  KGDEVLDY---IRQSSQIPVIMLTALGDKDLVSDYLLKGANDYITKPFNNKEVLARITV- 113

Query: 116 YRRLKVSNNRAETGPIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKR 167
             +L+ S+ +A+    +V +      DP+        E   L + E +I   L+++  + 
Sbjct: 114 --QLRQSHQQAKDQSDQVINFQAIHFDPKQFLIYTDQEAIRLTKIEAKIFHKLLSHPKQI 171

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             K +++ +I+       E+N + +H+S LRKKL
Sbjct: 172 FTKERLYESIWQA-QYIAEDNTLNTHLSNLRKKL 204


>gi|222110191|ref|YP_002552455.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221729635|gb|ACM32455.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 242

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 9/193 (4%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           + L +    D++ ++  L   G   LE+ R  R H+  P++ I+        L   + G 
Sbjct: 42  QALTAPQPPDLTLLDVML--PGIDGLEVLRQARRHTDNPIVVITARVEEVDRLIGLELGA 99

Query: 96  DDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           DD + KP   RE++ARV A+ RR        +      G + +        + G +  L 
Sbjct: 100 DDYICKPFSPREVVARVKAVLRRRAPLAQAAAQAELAYGALVLDEAQLQATLHGTLVALT 159

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFD 208
            RE  +L  L+A+    +++ Q+    Y    +   E  V+SHI  LR+KLR  +  G D
Sbjct: 160 PREWHLLRTLLAHPRSVLSRAQLLQHAYPDSPQEPNERAVDSHIKNLRRKLRSADPAGHD 219

Query: 209 PVDSKRFLGYSID 221
            + S   +G++ D
Sbjct: 220 WIRSVYGVGFAFD 232


>gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
 gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
          Length = 219

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           ++P+I ++   + +  +    +G DD + KP    E+LARV  + RR + + +R + G +
Sbjct: 71  EIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRRCQKTESRLKEGDL 130

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    R  + QG+   L  +E  +L  L+ N+   + +  I+  I+G      +   V+
Sbjct: 131 EIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKIWG-SGYMGDSRTVD 189

Query: 192 SHISKLRKKL 201
            H+ +LRKK+
Sbjct: 190 LHVQRLRKKI 199


>gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 224

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 21/172 (12%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L + R +RA   + P++ ++   ++   +D  D+G DD + KP    E+LARV A+ RR 
Sbjct: 60  LTMCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRRS 119

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+ ++   +TG  RV    R  E       L R E  +LE L+ N G+ + + 
Sbjct: 120 YPGDDTVLRCADLAVDTGAHRVRRGHRTVE-------LSRTEYALLEVLLRNAGQAMPRG 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
            +   ++G  D     N +E ++  LR+KL  + G +P  V + R +GY +D
Sbjct: 173 LLVERVWG-QDFGPSSNSLEVYVRYLRRKL--EAGGEPRLVHTVRGVGYRLD 221


>gi|49479205|ref|YP_036704.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49330761|gb|AAT61407.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 235

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 65  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPCHYEVVMAKIRSHLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV +   E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 125 PKVEDRMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     D +++ R +GY   I W+
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLHIEDAIETIRSVGYRLHITWD 230


>gi|17158742|ref|NP_478253.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134691|dbj|BAB77249.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 245

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 16/160 (10%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   +EL + +R   + +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+
Sbjct: 58  GMSGIELCKRLRNRGNALPVLMLTAKDSMADKVAGLDAGADDYLIKPFGMAELLARLRAL 117

Query: 116 YRR--LKVSNNRAETGPIRVFSDG------------RDPEVQGEVFPLPRRERRILEYLM 161
            RR  L  ++  ++  P+++   G            + P  + +V  L ++E ++LEYLM
Sbjct: 118 QRRSALGGASLTSQFQPLQLQVGGLILDCGNCTISRQYPNGENKVIYLTKKEFQLLEYLM 177

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
                 + + QI + +Y    E V  NVV + I  LR+KL
Sbjct: 178 KRPNTVITRDQILNHLYAFSAERV-SNVVAAQIRLLRRKL 216


>gi|116669221|ref|YP_830154.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609330|gb|ABK02054.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 246

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 7/163 (4%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           R DV  ++  L   G   +EL   IRA + +VP + ++   ++Q  +    +G DD V K
Sbjct: 65  RPDVLVLDVML--PGFDGVELLTRIRAFAPEVPALFLTAKDAVQDRILGLAAGGDDYVTK 122

Query: 102 PIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           P    E+L R+  + +R  V+  + AE   G + +  D R+    GE   L   +  +L 
Sbjct: 123 PFSMEEVLLRLHRLVQRSGVAAMDTAELVVGDLVLNIDTREVTRAGEELQLTATQFELLR 182

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           YLM N  + V+K QI   ++  +D   + N+VE +IS LRKK+
Sbjct: 183 YLMENPRRVVSKAQILDRVWD-YDFGGQANIVELYISYLRKKV 224


>gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 241

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 21/160 (13%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVA 113
           GE+VL+  R+ R  + V L+   D     T  D     + G DD + KP   RE++AR+ 
Sbjct: 60  GEQVLKQLRMDRNDTPVILLTAKD-----TEFDKVFGLEMGADDYIPKPFSPREVIARIN 114

Query: 114 AIYRR------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
           A+ RR             K + N   TGP  +           +   L  +E  ++EYL+
Sbjct: 115 AVLRRYEKSAAASETPATKSAENVETTGPFTIDHKKYRVSADSKNLKLTPKEFELMEYLV 174

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++  + +++ Q+   ++G FD + +  +V+  I+ LR+K+
Sbjct: 175 SHENQVLSRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKI 213


>gi|310639384|ref|YP_003944143.1| two component transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
 gi|308752960|gb|ADO44104.1| two component transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
          Length = 220

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           +P++ ++   + Q  ++  D+G DD + KP    E+++R  A+ RR    +  R   G +
Sbjct: 73  MPVLILTARGTWQERVEGIDAGADDYLPKPFQMAELVSRARALVRRAGGQAAPRIAAGAL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V +   +  + G    +   E RIL  L  N+ + V   ++   +YG  D+  E N +E
Sbjct: 133 EVDTTRMEVRLNGAQVFVTALEYRILSLLALNQSRAVPAVELLEHLYG-DDDTKEVNALE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + I++LR+    KLG   ++++R  GY +
Sbjct: 192 AAIARLRR----KLGPGILNTRRGFGYYL 216


>gi|220908317|ref|YP_002483628.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219864928|gb|ACL45267.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 224

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRA 126
            P++ ++   +L   +   D+G DD + KP    E+LARV A+ RR      L +S  R 
Sbjct: 73  TPVLMLTARDTLADKVTGLDAGADDYMVKPFELPELLARVRAMLRRSGASVALNLSWGRL 132

Query: 127 ETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
              P    V  D R          L  +E  +LE L++N  + +++T I   I+ L D  
Sbjct: 133 HLNPSTYEVTFDNRP-------LSLTPKEYALLELLVSNGRRVLSRTGIIERIWSLEDPP 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            EE  V+SHI  LR KLR     D  +++   LGY +
Sbjct: 186 SEET-VKSHIKGLRAKLREAGAPDNFIETVHGLGYRL 221


>gi|220908331|ref|YP_002483642.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
 gi|219864942|gb|ACL45281.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 652

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 11/167 (6%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L R +RA  SQVP++ I+   +    +   D+G DD + KP+   E+ ARV A+ RR 
Sbjct: 60  ITLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIF 174
               +  +T  ++V +   DP      +      L  +E  +LE  + + G+  ++ Q+ 
Sbjct: 119 ---GSETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLV 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++   D  +EE+ V++H+  LR+KL+     D +++   +GY ++
Sbjct: 176 EHLWTFDDPPLEES-VKAHVKGLRQKLKAAGAVDWIENIYGIGYRLN 221



 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 7/133 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD  +  +  + L    G+ L G N+   E W +  S R D+  ++  +       +
Sbjct: 383 LLVDDDPIFLEQIVLLLQPWGIHLTGINN-PLELWSVLPSTRPDLLILDVEM--PQTSGI 439

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL + +R+  +   +P+I ++ +   +T    F  G DD V KP+   E+L R+     R
Sbjct: 440 ELCQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINRLER 499

Query: 119 LKVSNNRAETGPI 131
            ++  + A   P+
Sbjct: 500 TRLIQSLASKDPL 512


>gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis]
          Length = 283

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 20/202 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LVK+GY           E F + + EE L+     +   I   L+      LE+ R +R 
Sbjct: 70  LVKEGY-----------EVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLEVAREVRK 118

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128
              +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +   AE  
Sbjct: 119 THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATNAKEAEVT 178

Query: 129 -------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  D      +GE   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 179 TQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHLLQTVWG-Y 237

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D   +   V+  + +LR+K+ +
Sbjct: 238 DYFGDVRTVDVTVRRLREKIED 259


>gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8]
 gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8]
 gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62]
 gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 234

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 20/202 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LVK+GY           E F + + EE L+     +   I   L+      LE+ R +R 
Sbjct: 21  LVKEGY-----------EVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLEVAREVRK 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128
              +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +   AE  
Sbjct: 70  THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATNAKEAEVT 129

Query: 129 -------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  D      +GE   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 130 TQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHLLQTVWG-Y 188

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D   +   V+  + +LR+K+ +
Sbjct: 189 DYFGDVRTVDVTVRRLREKIED 210


>gi|283471296|emb|CAQ50507.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 231

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 17/200 (8%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRA 69
           D  I    D  ++L+ +N    +   Q+  +  +   +  L+  G   +  L L   IR 
Sbjct: 11  DHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
           H+ +P+I IS     QT +   D+G +D + KP +  E+ AR+  I R   ++ +  ET 
Sbjct: 71  HTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER---IAKSHQETN 127

Query: 130 PIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              VF++G        +   +  +   L   E  +LE L  ++GK +    I   IYG  
Sbjct: 128 --FVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGYV 185

Query: 182 DEAVEENVVESHISKLRKKL 201
           ++  E   +  H++ LR+KL
Sbjct: 186 NKT-EMPSLRVHMTSLRQKL 204


>gi|190574616|ref|YP_001972461.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190012538|emb|CAQ46166.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 232

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 23/221 (10%)

Query: 8   RALVKDGYI---ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLEL 63
           + L++ GY+   A  G DG+ L G            S    +  ++  L G  G  VL  
Sbjct: 18  QGLIEAGYVVDLACNGVDGLHLAG------------SGEYQLVILDVMLPGLDGWNVLS- 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121
            R+  A  QVP++ ++   S+   +   + G DD + KP    E+LARV  + RR +   
Sbjct: 65  -RLREAGWQVPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQAQP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
              R     + V +  R  E  G+   L ++E  +LE L   RG+ + ++ I S ++ + 
Sbjct: 124 QAERIVIADLVVDTLRRRVERGGQRITLSQKEYTLLELLARRRGEVLPRSLIASQVWDMN 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 184 FDS--DTNVIDVAIRRLRAKIDDDFDAKLIVTVRGMGYVLE 222


>gi|187777750|ref|ZP_02994223.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC
           15579]
 gi|187774678|gb|EDU38480.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC
           15579]
          Length = 217

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 73/149 (48%), Gaps = 4/149 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I ++    +   +     G DD + KP    E+LAR+ A+ RR        +   + 
Sbjct: 72  IPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLRRCGKIEEVIKLKHLD 131

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +F + R  + +GE+  +  +E  +L   + N+   +++ QI   ++G +D   E   V+ 
Sbjct: 132 IFPEQRLIKSKGEIIDITLKEYELLMLFIKNKNIALSREQILERVWG-YDYFGETRTVDI 190

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           H+ ++R+KL  K   D + +   +GY ++
Sbjct: 191 HVLRIREKLNLK---DCIKTVYKVGYRLE 216


>gi|116494021|ref|YP_805755.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116104171|gb|ABJ69313.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 232

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 4/155 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA + VP+I ++   + +  +    +G DD V KP    E+ AR+ A +RR      RA
Sbjct: 75  IRAITSVPIIFLTARVTDEDKVRGLGAGGDDYVTKPFSLAELGARIKAHFRRESQPQKRA 134

Query: 127 ETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                 ++  D R  +V    +V  L +++ +++E L  N G+  ++ Q++  I+G +D 
Sbjct: 135 RMAIFDQILIDYRAKQVSIGDQVLSLEKKQYQLVELLSLNPGQVFSREQLYEKIWG-YDA 193

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++ V+  HI ++R          P+++   +GY
Sbjct: 194 LGDDRVITEHIRRIRLLFDRYQVTSPIETVWGVGY 228


>gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           TA208]
          Length = 235

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 21/220 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY     D   + +G  ++E  E LQ     D+  ++  L  K    +E+ R +R 
Sbjct: 22  LRKEGY-----DVHCAYDGNEAVEMVEELQP----DLILLDIMLPNKDG--VEVCREVRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV------- 121
              +P+I ++   S    +   + G DD V KP   RE+LARV A  RR L V       
Sbjct: 71  KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLTVAPAEEES 130

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++N    G + +F D      + E   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 131 ASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-Y 189

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           D   +   V+  + +LR+K+  N    + + ++R +GY +
Sbjct: 190 DYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 229


>gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
 gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
          Length = 234

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 11/153 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSH 120

Query: 119 -LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            + V    A++ P       + +  +    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 121 PIPVDEQEADSKPQPIQIGDLEIVPEAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 212


>gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 228

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 7/117 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQG 144
            + G DD ++KP   RE+LAR+ A+ RRL+     A        GP+RV    R  E+  
Sbjct: 92  LELGADDFMSKPFDLRELLARIKALVRRLEREGAPAPEGTEVVLGPLRVRPSSRTAELGA 151

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
               L  +E  +L  L+++ G+   + ++   ++  FD       V+ HI +LRKKL
Sbjct: 152 IALDLTPKEFDVLALLVSHAGRVYTRDELLEQVWS-FDYVGGTRTVDIHIQRLRKKL 207


>gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
 gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
          Length = 239

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 16/223 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIG-KGEKV 60
           ++++D A + D      GD+G  +    S +     L+     D   ++  L G  G +V
Sbjct: 7   LIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDGLQV 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R +  +  VP+I IS   S    +   + G DD + KP    E++ARV A+ RR +
Sbjct: 67  CQRARAMARY--VPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                A       E G +++    R   V+G    L  RE  +L +   +  +  A+ ++
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVEGTALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            + ++G +     E+ V +HI++LR K+      DP + +R L
Sbjct: 185 LNQVWG-YQHDGYEHTVNTHINRLRSKIET----DPANPRRLL 222


>gi|209573944|gb|ACI62910.1| two component response regulator CusR2 [Acidithiobacillus
           thiooxidans]
          Length = 227

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+    S +P+I IS   +L   ++  D G DD + KP    E+LAR+ AI RR    
Sbjct: 70  LQRVRAMGSDLPIIIISARDALSDRIEGLDLGADDYLVKPFAMDELLARLRAIIRRQGGQ 129

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +    +G +++       ++      L RRE  +L+ L+   G  +++ Q+   +YG +
Sbjct: 130 RSPVLSSGSLQLDLSTHIAQLGEASVLLSRREFALLQALLLRPGAILSRAQLEERLYG-W 188

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E +E N ++  I  LRK    KLG + + + R  G+ +
Sbjct: 189 GEEIESNSIDFLIHALRK----KLGAEVIKNVRGAGWMV 223


>gi|254380355|ref|ZP_04995721.1| two component transcriptional regulator [Streptomyces sp. Mg1]
 gi|194339266|gb|EDX20232.1| two component transcriptional regulator [Streptomyces sp. Mg1]
          Length = 236

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 12/167 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +RA   VP+I ++   S    +    SG DD V KP    E+LAR+ A+ RR  
Sbjct: 57  IEVCRELRARGGVPVIAVTARGSEPDRVRGLRSGADDYVVKPFGTAELLARIEAVLRR-- 114

Query: 121 VSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N++    P+     G       R   + G+  PL R+E  IL  L+   G  V++ +I
Sbjct: 115 SMNHQPHPEPLLTLDGGLAIDLAQRTVTLDGQPVPLTRKEYDILAVLVRADGAAVSRDRI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++    + +    ++ H++ LR KL        V + R  GY +
Sbjct: 175 LVEVWQTAYDGMSRT-LDVHVATLRGKLGRTGSL--VQTVRGFGYRL 218


>gi|196040764|ref|ZP_03108063.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196028554|gb|EDX67162.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 223

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+  ++   S    L   + G DD + KP +   +LARV  I RR   +
Sbjct: 63  ICREIRKTSDIPIFMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +   I ++ D            Q +   L + E +IL  L+ NRG  V +  +   
Sbjct: 120 SGDFKMNHILIYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++   D  V+++ +  +I++LRKKL      +P+ ++R LGY
Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLEEIGIENPIATRRSLGY 220


>gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222


>gi|323495121|ref|ZP_08100207.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
 gi|323310622|gb|EGA63800.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
          Length = 231

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 18/138 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--------ETGPIRVFSDGRDPEVQGE 145
           G DD + KP   RE+LAR+ AI RR + S N          E   I+++   ++   QGE
Sbjct: 93  GADDYLPKPFSDRELLARIRAILRRTQSSANGKQGKNSDCIEYQDIQIYPGKQEAYCQGE 152

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
           +  L   E  +L + + N G+ + K  +   + G     FD A     ++ H+S LRKKL
Sbjct: 153 LMVLTTTEFALLSHFVQNPGQTLTKEALSLDVLGKRLAAFDRA-----IDMHVSNLRKKL 207

Query: 202 -RNKLGFDPVDSKRFLGY 218
              K G   + + R  GY
Sbjct: 208 PERKDGKSRIKTLRGRGY 225


>gi|312863892|ref|ZP_07724130.1| response regulator protein GraR [Streptococcus vestibularis F0396]
 gi|311101428|gb|EFQ59633.1| response regulator protein GraR [Streptococcus vestibularis F0396]
          Length = 226

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP     +LA++  + RR        
Sbjct: 67  IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + +     D   QGEV  L + E +IL+ L    G  V++  +   ++   D 
Sbjct: 127 SLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERSGNIVSREDLMKELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      D +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGL 222


>gi|295109503|emb|CBL23456.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 228

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 1/143 (0%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S VP+I +S    +   ++ F+ G DD + KP     +   + A+ +R     N
Sbjct: 69  REIRKISDVPVIILSARSEVTDQMNGFEKGADDYITKPFSLGLVKLHIEAVLKRAGKMKN 128

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E G I++    +    + E+  + RRE  +L Y + ++   +++  I +A++  +D A
Sbjct: 129 ILECGKIKIEKGRQLVYREDEMLEMTRREYELLLYFIEHKETVLSRETILNAVWD-YDYA 187

Query: 185 VEENVVESHISKLRKKLRNKLGF 207
            +   V++ + ++RKKL +   +
Sbjct: 188 GDVRTVDTLVKQIRKKLGDDCNY 210


>gi|289662555|ref|ZP_06484136.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289667795|ref|ZP_06488870.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 233

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR     NR +   + 
Sbjct: 73  TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRR-----NRGQASEVV 127

Query: 133 -----VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
                VF +      + G    LP RE R+ E L+   G+ V K +I + ++G FD+   
Sbjct: 128 QIGGFVFDNAAHTLTLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAG 186

Query: 187 ENVVESHISKLRKKL 201
            N +E ++ +LR+KL
Sbjct: 187 PNAIELYVGRLRRKL 201


>gi|268607933|ref|ZP_06141664.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 228

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E  +++R  +Q P+I ++      + +  F SG DD + KP     + AR+ A  RR  
Sbjct: 61  MEFCKLLRTKTQAPVIFLTARDENDSVIMGFRSGGDDYITKPYDLNVLKARIEAQLRRNT 120

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V + + E   + V        + G    LP+RE +IL  L ++ G R++   I+  I
Sbjct: 121 NQQVQHPKIELPYLTVDLFSGTVTLDGNECSLPQRELQILYLLASHIGSRISYHDIYKNI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           YG  D    +N +  +IS+L+K L
Sbjct: 181 YGC-DVEDSKNTIRVNISRLKKHL 203


>gi|228993566|ref|ZP_04153474.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228766157|gb|EEM14803.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 229

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 10/166 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----RLK 120
           R IR  SQVP+I ++       TL  F+ G DD V KP     +LAR   +        K
Sbjct: 66  RRIRKTSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRILTSK 125

Query: 121 VSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +N  +T  I    V    R   ++G    L   E  IL Y M N+   + + Q+ S I
Sbjct: 126 SPSNEDDTLSIHGICVHFPSRIVTIEGVDINLTHTEFEILTYFMQNQWIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G ++ A ++  V SHI  LR KL +K  +  + +   +GY  + N
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGDKAKY--ITTVVRMGYKFEGN 228


>gi|260588299|ref|ZP_05854212.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|260541350|gb|EEX21919.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
          Length = 230

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 17/146 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR    N +A
Sbjct: 67  IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 126

Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             G I+  +        + R    +   F LP +E  +L Y   ++GK + K QI+  ++
Sbjct: 127 --GAIQKLNFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 184

Query: 179 G---LFDEAVEENVVESHISKLRKKL 201
           G    +D++   N++ + IS+LRKKL
Sbjct: 185 GEEYFYDDS---NIM-AIISRLRKKL 206


>gi|239815299|ref|YP_002944209.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus S110]
 gi|239801876|gb|ACS18943.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus S110]
          Length = 230

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
            D+G DD + KP   +E+LAR+ A+ RR   +V   R E G + + +       QG    
Sbjct: 96  LDAGADDYITKPFSTQEMLARIRAVLRRRAPEVVTERVEIGELALDTATHRVTWQGNALK 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           +   E ++L YLM +  +  ++ Q+   ++G  D   +EE  V+ H+ +LR+ L
Sbjct: 156 VGPTEFKLLAYLMQHAERVHSRAQLLDKVWG--DHVYIEERTVDVHVKRLRESL 207


>gi|254386084|ref|ZP_05001398.1| two-component system regulator [Streptomyces sp. Mg1]
 gi|194344943|gb|EDX25909.1| two-component system regulator [Streptomyces sp. Mg1]
          Length = 240

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 23/205 (11%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91
           EE LQ+    D       L+  G   +   E+   IR  +  P+I ++    +++ +   
Sbjct: 34  EEALQALLPADAPPFGVVLLDLGLPDQDGYEVCGKIRKRTSTPVIMVTARADVRSRIHGL 93

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----------------GPIRVFS 135
           + G DD V KP    E+LAR+ A+ RR   S N A                  GP+ +  
Sbjct: 94  NMGADDYVVKPYDTGELLARIHAVARRTGGSENTATATPGPAGTGGEPGVVRLGPVSIEL 153

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
             R   V G   PL R+E  +L  L    G    + QI S ++    E      +E H++
Sbjct: 154 PTRRVSVDGADVPLTRKEFDLLALLAQRPGVVFRREQIISEVWRTSWEGTGRT-LEVHVA 212

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220
            LR KLR     + V   R +GY +
Sbjct: 213 SLRSKLRMPALIETV---RGVGYRL 234


>gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
 gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
          Length = 242

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----------------GPIRVFSDG 137
           G DD + KP   RE+LAR+ AI RR+   +N  E                 G IR+    
Sbjct: 95  GADDYMTKPFSPREVLARMKAIMRRMSSKSNAEEALKTKDTIKEEAELVQVGDIRIDPSQ 154

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
            +  V+ E   +  +E  +L Y++    + +++ Q+  AI+  FD A E  +V+ HIS L
Sbjct: 155 YEVIVRDEKVDVTPKEFELLMYMIKRINRILSREQLLDAIWN-FDYAGETRIVDVHISHL 213

Query: 198 RKKL 201
           R+K+
Sbjct: 214 REKI 217


>gi|120555441|ref|YP_959792.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325290|gb|ABM19605.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 242

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 13/148 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           VP + ++   S    +   D+G DD + KP    E++AR+ A+ RR   SN   E     
Sbjct: 74  VPAVFLTQRDSETDIVRALDAGADDYIAKPARAAELVARINALARR---SNPEIEKEVLV 130

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GP  + ++ R   + GE   L  ++  +  +L  N+G+ + +  +   ++GL  + +  
Sbjct: 131 YGPFEINTNQRIILLHGEPLTLTDKDFDLTLFLFQNQGRLLTREMLLERVWGLTRD-INT 189

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRF 215
             V++H+S+LR+    +LG +P +  R 
Sbjct: 190 RTVDTHMSRLRR----RLGLNPENGFRI 213


>gi|189346808|ref|YP_001943337.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
 gi|189340955|gb|ACD90358.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
          Length = 222

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 4/162 (2%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +R A S VP++ ++   +L+  +   D+G +D + KP    E+LAR+    RR 
Sbjct: 60  IEVCRQVRKAGSSVPILFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRN 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++    G + V         +     L  +E  +LE+L  N+ K   +++I   ++ 
Sbjct: 120 NPESDTITAGCVTVNPVTHQVFCRNTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVWD 179

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + FD   + +V++ +I+ LRKKL      + + + R +GY I
Sbjct: 180 MHFDS--DTSVIDVYINFLRKKLDIVGCGNIIQTIRGVGYII 219


>gi|320324367|gb|EFW80446.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328510|gb|EFW84512.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 227

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ R +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI 
Sbjct: 63  GRDGMDICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   S +      ++V          G    L   E R+L     + G+  ++  +   
Sbjct: 123 RRTS-STDPHTPKVLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SHI  LR+KL     G DP+ S   +GY ++ 
Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227


>gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 240

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 15/141 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----------GPIRVFSDGRDPEV 142
           G DD + KP   RE+ ARV AI RR +++   +E            G +++  D  +   
Sbjct: 96  GADDYMTKPFSPREVNARVKAILRRSEIAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYF 155

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +     L  +E  +L YL  ++G+ + +  + SA++  +D A +  +V+ HIS LR K+ 
Sbjct: 156 KESQLELTPKEFELLLYLGRHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIE 214

Query: 203 NKLGFDPVDSK--RFLGYSID 221
           N     PV  K  R LGY ++
Sbjct: 215 NNTK-KPVYIKTIRGLGYKLE 234


>gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 228

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 19/207 (9%)

Query: 27  EGFN-SLEFE--EWLQSSAREDVSAIEAFLIGKGEKVLE-LPRIIRAHSQVPLIGISDYP 82
           EG+N ++++   E L ++A    S +   ++  G   LE L R+ +   Q P+I ++   
Sbjct: 26  EGYNVTIKYNGTEGLNAAAEGRYSLVLLDVMLPGLSGLEVLRRLRKTDQQTPVILLTARD 85

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF---SDGRD 139
           S+   +   D G +D V KP    E+LAR+     R+ +  N  +T  I  F    D R 
Sbjct: 86  SIPDKVTGLDIGANDYVTKPFEIEELLARI-----RVALRQNGTKTEDIDTFLTYDDLRV 140

Query: 140 PEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
            E   EV        L  RE  +L Y++ +  + + + QI ++++G FD   + NVV+ +
Sbjct: 141 NEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILNSVWG-FDYIGDTNVVDVY 199

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  +RKKL        + + R +GY+I
Sbjct: 200 IRYIRKKLDYPYEKQLIHTVRGVGYAI 226


>gi|229017295|ref|ZP_04174199.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229023471|ref|ZP_04179968.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228737824|gb|EEL88323.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228743996|gb|EEL94094.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 225

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 97/199 (48%), Gaps = 5/199 (2%)

Query: 27  EGFNSLEFEEWLQSSAR-EDVSAIEAFL--IGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF + E  + L +  R E+V    A L  +       +L   +R +  +P++ ++    
Sbjct: 25  EGFQTYEAVDGLDALRRIEEVKVDMAILDIMMPNMDGFDLCYELRKYYDMPILMLTAKGE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEV 142
               +  F  G DD + KP    E++ RV A+ +R +++ +++ + G + +  +  +   
Sbjct: 85  TSQKIKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQITVSQSIQVGNVLLNRNTFEVNA 144

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             +   LP +E  +L  L +  G+  ++ Q+   ++G +D    E  ++ HI++LR+K +
Sbjct: 145 GEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEGNERTLDVHINRLREKFQ 203

Query: 203 NKLGFDPVDSKRFLGYSID 221
            +L    + + R LGY ++
Sbjct: 204 EELSKFSIRTIRGLGYRLE 222


>gi|194291911|ref|YP_002007818.1| response regulator [Cupriavidus taiwanensis LMG 19424]
 gi|193225815|emb|CAQ71761.1| putative response regulator [Cupriavidus taiwanensis LMG 19424]
          Length = 245

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR----AET 128
           VP+I ++        +D  D+G DD V +P++ R ++AR+AA+ RR+     R     + 
Sbjct: 68  VPIILLAADNCEDKLVDALDAGADDYVCRPLNARVLMARIAALRRRVTGERVRQGLVVQA 127

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           GP ++ S GR   + GE   +  +E  +   L +N G+ +A  +I  AI+   +      
Sbjct: 128 GPYQLNSTGRFATLHGERIAMTPKEFDLAMMLFSNVGRVLASERIQQAIW-RHELPPLSR 186

Query: 189 VVESHISKLRKKLR 202
            +   IS+LRK LR
Sbjct: 187 ALAGLISRLRKTLR 200


>gi|104781058|ref|YP_607556.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95110045|emb|CAK14750.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 222

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 7/152 (4%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--RA 126
           A+   P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR K   N  R 
Sbjct: 69  ANLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRAKGLANQPRL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           E   + +    +    +G    L   E R+L Y M + G+ ++K+ +   +Y    E  +
Sbjct: 129 EAAGLHLDESRQCVSREGVDIQLTAAEFRLLRYFMLHPGQVLSKSHLAEHLYDGETER-D 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            NV+E H++ LR+    KLG   ++++R  GY
Sbjct: 188 SNVLEVHVNHLRR----KLGRSVIETRRGQGY 215


>gi|49483935|ref|YP_041159.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425808|ref|ZP_05602232.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428474|ref|ZP_05604872.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431108|ref|ZP_05607485.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433791|ref|ZP_05610149.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257436707|ref|ZP_05612751.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904264|ref|ZP_06312152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|282906089|ref|ZP_06313944.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909004|ref|ZP_06316822.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911320|ref|ZP_06319122.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914489|ref|ZP_06322275.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282919458|ref|ZP_06327193.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282924835|ref|ZP_06332501.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958444|ref|ZP_06375895.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503567|ref|ZP_06667414.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510582|ref|ZP_06669287.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|293537124|ref|ZP_06671804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|295428264|ref|ZP_06820893.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590773|ref|ZP_06949411.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|49242064|emb|CAG40763.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271502|gb|EEV03648.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275315|gb|EEV06802.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278056|gb|EEV08704.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281884|gb|EEV12021.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284058|gb|EEV14181.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313201|gb|EFB43597.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317268|gb|EFB47642.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282321670|gb|EFB51995.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282325015|gb|EFB55325.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327268|gb|EFB57563.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331381|gb|EFB60895.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595882|gb|EFC00846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|283470960|emb|CAQ50171.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283790593|gb|EFC29410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919969|gb|EFD97037.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|291095233|gb|EFE25498.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466473|gb|EFF08994.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|295127664|gb|EFG57301.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575659|gb|EFH94375.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|312437849|gb|ADQ76920.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195597|gb|EFU25984.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 233

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQGEVF 147
           G DD + KP   RE++ARV AI RR +      E       G IR+  D  +     E+ 
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRSQFVKEVEEIDDDITIGSIRIRPDYFEVYKHNELL 155

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLG 206
            L  +E  +L YL+  +G+ + +  + + ++  ++ A +  +V+ HIS LR KL  N   
Sbjct: 156 ELTPKEFELLLYLIERQGRVITREHMLNTVWN-YEFAGDSRIVDVHISHLRDKLEDNPKK 214

Query: 207 FDPVDSKRFLGYSID 221
              + + R LGY ++
Sbjct: 215 PQLIKTVRGLGYKLE 229


>gi|157155282|ref|YP_001463431.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           E24377A]
 gi|187730866|ref|YP_001879801.1| DNA-binding transcriptional regulator BaeR [Shigella boydii CDC
           3083-94]
 gi|193069293|ref|ZP_03050249.1| DNA-binding response regulator BaeR [Escherichia coli E110019]
 gi|194431476|ref|ZP_03063768.1| DNA-binding response regulator BaeR [Shigella dysenteriae 1012]
 gi|209919543|ref|YP_002293627.1| DNA-binding transcriptional regulator BaeR [Escherichia coli SE11]
 gi|218554646|ref|YP_002387559.1| DNA-binding transcriptional regulator BaeR [Escherichia coli IAI1]
 gi|218695701|ref|YP_002403368.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 55989]
 gi|260856059|ref|YP_003229950.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O26:H11 str. 11368]
 gi|260868788|ref|YP_003235190.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O111:H- str. 11128]
 gi|300818923|ref|ZP_07099128.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821816|ref|ZP_07101961.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300902275|ref|ZP_07120272.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|301304482|ref|ZP_07210593.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301643523|ref|ZP_07243567.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|309792958|ref|ZP_07687386.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331653508|ref|ZP_08354509.1| transcriptional regulatory protein BaeR [Escherichia coli M718]
 gi|331668775|ref|ZP_08369623.1| transcriptional regulatory protein BaeR [Escherichia coli TA271]
 gi|331677990|ref|ZP_08378665.1| transcriptional regulatory protein BaeR [Escherichia coli H591]
 gi|331683763|ref|ZP_08384359.1| transcriptional regulatory protein BaeR [Escherichia coli H299]
 gi|157077312|gb|ABV17020.1| DNA-binding response regulator BaeR [Escherichia coli E24377A]
 gi|187427858|gb|ACD07132.1| DNA-binding response regulator BaeR [Shigella boydii CDC 3083-94]
 gi|192957426|gb|EDV87873.1| DNA-binding response regulator BaeR [Escherichia coli E110019]
 gi|194420301|gb|EDX36378.1| DNA-binding response regulator BaeR [Shigella dysenteriae 1012]
 gi|209912802|dbj|BAG77876.1| two-component response regulator [Escherichia coli SE11]
 gi|218352433|emb|CAU98207.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli 55989]
 gi|218361414|emb|CAQ99001.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli IAI1]
 gi|257754708|dbj|BAI26210.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O26:H11 str. 11368]
 gi|257765144|dbj|BAI36639.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O111:H- str. 11128]
 gi|300405637|gb|EFJ89175.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300525658|gb|EFK46727.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300528542|gb|EFK49604.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300840208|gb|EFK67968.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301078096|gb|EFK92902.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|308123244|gb|EFO60506.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|315255409|gb|EFU35377.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|320179499|gb|EFW54454.1| Response regulator BaeR [Shigella boydii ATCC 9905]
 gi|323152300|gb|EFZ38589.1| transcriptional regulatory protein baeR [Escherichia coli EPECa14]
 gi|323172671|gb|EFZ58305.1| transcriptional regulatory protein baeR [Escherichia coli LT-68]
 gi|323177024|gb|EFZ62614.1| transcriptional regulatory protein baeR [Escherichia coli 1180]
 gi|324019615|gb|EGB88834.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324119108|gb|EGC12997.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|331048357|gb|EGI20433.1| transcriptional regulatory protein BaeR [Escherichia coli M718]
 gi|331063969|gb|EGI35880.1| transcriptional regulatory protein BaeR [Escherichia coli TA271]
 gi|331074450|gb|EGI45770.1| transcriptional regulatory protein BaeR [Escherichia coli H591]
 gi|331078715|gb|EGI49917.1| transcriptional regulatory protein BaeR [Escherichia coli H299]
 gi|332092359|gb|EGI97433.1| transcriptional regulatory protein baeR [Shigella dysenteriae
           155-74]
          Length = 240

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  + + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|290352153|dbj|BAI78787.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+R   +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRSQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|290352123|dbj|BAI78772.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+ R  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFSRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|227872060|ref|ZP_03990437.1| response regulator [Oribacterium sinus F0268]
 gi|227842091|gb|EEJ52344.1| response regulator [Oribacterium sinus F0268]
          Length = 233

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 95/224 (42%), Gaps = 26/224 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LV DGY           + F +   EE LQ  ++E++  +   ++  G   LE+ R IR 
Sbjct: 23  LVSDGY-----------KVFKAYNAEEGLQILSQEEIHLVLLDVMMPGMNGLEMCRKIRE 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---------K 120
            S +P+I +S        +     G DD V KP +  E+ ARV +  RR           
Sbjct: 72  SSNIPVIMLSAKSEDLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYTQLNPNAGPN 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             NN      + +  D     +  E   L   E  IL  L ++ GK  +  +IF  ++  
Sbjct: 132 YVNNEIHIRNMLINKDNHKVLIDDEDIKLTPIEFDILFLLASHPGKVFSTDEIFEKVW-- 189

Query: 181 FDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
            +E V E  N V  HI +LR K++     D + +  + +GY I+
Sbjct: 190 -NEKVYEANNTVMVHIRRLRGKMKEDQREDKIITTVWGVGYKIE 232


>gi|218671174|ref|ZP_03520845.1| two-component response regulator protein [Rhizobium etli GR56]
          Length = 169

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 21/171 (12%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA  +Q  ++ ++   + +  +   D G DD + KP    E  ARV  + RR 
Sbjct: 4   LDVLRAMRARQNQAAVLILTARGAPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRR- 62

Query: 120 KVSNNRAET---GPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +  R+ T   G I      R FS G  P        +P RE  +LE L    GK VAK
Sbjct: 63  -QAGLRSATVGFGGISFDLNSRTFSAGSTP------LDIPARELGLLEILFMRAGKVVAK 115

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I  ++   FD+ +  N +E ++S+LRK+L +  G   V + R +GY +D
Sbjct: 116 EAIIQSLTA-FDDDISANAIEQYVSRLRKRL-SPHGL-TVKTARGIGYYLD 163


>gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 231

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 6/116 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGE 145
            ++G DD + KP   RE++ARV A+ RR + +     +  I       DP      + G+
Sbjct: 93  LETGADDYLTKPFAPRELVARVRALLRRPRHTEVSMPSSLIHYGGLVIDPVAHTVALDGQ 152

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  L   E  +L  + A  G+  ++TQ+   I+G  D   +E+VVE HI+ LRKKL
Sbjct: 153 LLTLTPIEYALLSVMAAAPGRVFSRTQLLDRIWG-HDYFGDEHVVEVHITNLRKKL 207


>gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 237

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN   +      F       +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218


>gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
 gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 239

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 14/140 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAE-------TGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+ ARV AI RR  +S+    R E        G +++  +  +   +
Sbjct: 96  GADDYMTKPFSPREVTARVKAILRRADISSLSQGREEEKDGKILIGELKILPEHYEAYFK 155

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            E   L  +E  +L YL  ++G+ + +  + SA++  +D A +  +V+ HIS LR K+ +
Sbjct: 156 SEQLELTPKEFELLLYLGKHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIES 214

Query: 204 KLGFDPVDSK--RFLGYSID 221
                P+  K  R LGY ++
Sbjct: 215 NTK-KPIYIKTIRGLGYKLE 233


>gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
 gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 8/134 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPIR----VFSDGRDPEVQGE-VF 147
           G DD + KP   RE++AR+ A+ RR +V ++ +E T  I+    V  D +    + + + 
Sbjct: 95  GADDYITKPFSPREVIARLKAVLRRSQVDHHESERTDAIKIQNLVIDDNKKVVTKNDKIL 154

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLG 206
            L  RE  +L Y     G+ + +  I +A++G ++   E  +V+ HIS LR+K+  N   
Sbjct: 155 TLTPREYELLLYFSQRVGRVIDRETILTAVWG-YEFVGESRMVDMHISNLREKIETNPKS 213

Query: 207 FDPVDSKRFLGYSI 220
            + + + R  GY++
Sbjct: 214 PEVLKTVRGFGYTM 227


>gi|291556132|emb|CBL33249.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 235

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 34/242 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            +++DD   + D       +DG ++  F N ++  + ++S    D++ ++  L    G +
Sbjct: 5   ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGMDALKCIESQNL-DLAILDVMLPDIDGFR 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +    IR     P+I ++        +     G DD + KP +  E++ARV    RR 
Sbjct: 64  ICQK---IREQYYYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRY 120

Query: 120 KVSNNRAET----GPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
              NN A T     PI         +  +     + G+   L   E  IL YL  NRGK 
Sbjct: 121 VRYNNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKV 180

Query: 168 VAKTQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYS 219
           ++  ++F  I+G    D     N V +HI +LR+KL      +P    +F+      GY+
Sbjct: 181 ISSEELFENIWGEKFLD---NNNTVMAHIGRLREKLN-----EPAKKPKFIKTVWGVGYT 232

Query: 220 ID 221
           I+
Sbjct: 233 IE 234


>gi|269961390|ref|ZP_06175755.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833941|gb|EEZ88035.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 221

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 9/161 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R I      P++ ++      + LD + +G D  + KP +  E+L R+ AI RR+ 
Sbjct: 61  MQVARRICQRFATPILMLTALNDENSMLDGYQAGADQYIGKPFNVSELLMRIKAILRRVG 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   R A    ++  SD  D        PL   E  +L YL+ N+G  ++K ++ + +  
Sbjct: 121 LERQRQAMCSTVQSISDQLDS------LPLTGTEAELLSYLVKNQGVVISKAELQTKVLK 174

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
                 + N ++ HIS +R+KL    L    + + R  GYS
Sbjct: 175 KELSPFDRN-LDMHISNIRRKLVEAGLSKQHIKTFRGKGYS 214


>gi|269139949|ref|YP_003296650.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|267985610|gb|ACY85439.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|304559784|gb|ADM42448.1| DNA-binding response regulator KdpE [Edwardsiella tarda FL6-60]
          Length = 229

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 18/164 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R +R  S +P+I +S        ++  D+G +D ++KP    E+LARV    RR  
Sbjct: 65  VEFIRDLRRWSAIPVIVLSARCDEADKVEALDAGAEDFLSKPFGVAELLARVRVALRR-- 122

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               + +  P+  F+D       R    +GE   L   E R+L  L+AN GK + + Q+ 
Sbjct: 123 -HTRQQQESPLVCFADVQVDLLARSVTRRGERLHLTPIEFRLLAELIANSGKVLTQRQLL 181

Query: 175 SAIYGLFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216
           S+++G        N VE SH  ++    LR KL  +P   +  L
Sbjct: 182 SSVWG-------PNYVEHSHYLRIYMGHLRQKLEAEPARPRHLL 218


>gi|253689341|ref|YP_003018531.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755919|gb|ACT13995.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 242

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 8/155 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP+I ++        L   + G DD + KP   RE++ RV
Sbjct: 62  LMLPGCDGLTLCRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRV 121

Query: 113 AAIYRRLKVSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
             + RR    N+      + ET  + +   G      G+   L   E R+L+ L    GK
Sbjct: 122 RTLLRRCGWQNDGVKAIEKTETALV-IDKGGFQASYLGQNLDLTPAEFRLLKTLSTEPGK 180

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             ++  +   +Y  +   V +  ++SHI  LR+KL
Sbjct: 181 VFSREALLDKLYDDY-RVVTDRTIDSHIKNLRRKL 214


>gi|284005671|ref|YP_003391491.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
 gi|283820855|gb|ADB42692.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 226

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 2/152 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127
           AHS   +I +S   SL   L   + G DD + KP H  E+ AR+ ++ RR +     +  
Sbjct: 69  AHSSAGIIIVSAKNSLDDKLSGLELGADDYLTKPFHLPELNARIRSLMRRRQHAGETQLT 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE- 186
            G I +    +   V  +   +  +E  +L ++  N+ + ++K  I   ++G + + ++ 
Sbjct: 129 CGAITIVPHRKQVLVANQPMDVTGKEYELLLFMATNKNRLLSKAIIVEHVWGDYMDGIDS 188

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + + +H+  LR+KL +    D + ++   GY
Sbjct: 189 HDFLYTHVRNLRRKLLDAGSPDYITTRYGAGY 220


>gi|199599197|ref|ZP_03212599.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258507151|ref|YP_003169902.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258538344|ref|YP_003172843.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199589878|gb|EDY97982.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257147078|emb|CAR86051.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150020|emb|CAR88992.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259648521|dbj|BAI40683.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 224

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 3/152 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRA 126
           R    +P++ I+    + +    F+SG+DD + KPI+  E+L R+ A+ RR K++ +N  
Sbjct: 69  RTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRAKITADNLL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + + ++    +V  +   +  RE +IL  L++      ++ ++ +  + L  +   
Sbjct: 129 IVGNLTLNNEAITAQVNHQTVDVTVREFQILYKLLSYPDHAFSRAELINEFWDLASDT-S 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              V+ +I+KLR+K +   GF  + +   LGY
Sbjct: 188 MRAVDVYITKLREKFKAADGF-TIKTIHGLGY 218


>gi|168334754|ref|ZP_02692882.1| hypothetical protein Epulo_07020 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 222

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 1/159 (0%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I  A   VP+I +S    ++  +   D G +D + KP    E+LAR+ A+ R+   +
Sbjct: 63  LKKIRTAGMSVPVIILSAKSQIEDKIVGLDCGANDYLAKPFDAGELLARIRAMTRKATQN 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     G   +     +  V      LP +E +ILE LM+ +   V+  ++   I+G ++
Sbjct: 123 NIFLMMGNATLNVANFELVVADGKIKLPNKEFQILEMLMSRKDAVVSVDKLAERIWG-YE 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V+   +  +IS LRKKL        +   R +GY ++
Sbjct: 182 NEVDITTIWVYISNLRKKLVALSATVQIKVVRGVGYRME 220


>gi|152983575|ref|YP_001347907.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150958733|gb|ABR80758.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 223

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++            +S   D+  ++  L G+    L
Sbjct: 3   LLLVEDHVPLADELLASLGRQGYAVDWLADGRDAALQGASEPYDLIILDLGLPGR--PGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  R      P++ ++   S    +D   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EILREWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N++  E   + +    +   + G    L   E R+L Y M + G+ ++K  +   +Y
Sbjct: 121 GLANQSQLEAAGLSLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               E  + NV+E H++ LR+    KLG + ++++R  GY
Sbjct: 181 DGETER-DSNVIEVHVNHLRR----KLGREVIETRRGQGY 215


>gi|58580831|ref|YP_199847.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425425|gb|AAW74462.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 246

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G   +E+ R +R  A  Q P++ ++   SL   L  FDSG DD + KP   +E+  R+ A
Sbjct: 77  GMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNA 136

Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR K  + R  ETG +    D  +   +G++  L     +IL+ LM      V + ++
Sbjct: 137 LSRRGKGVHTRVLETGDLEYNLDTLEVRRRGKLLQLNPTALKILQALMEASPAVVTRQEL 196

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G  +E  + + +  HI  LR  +        + ++  +GY I
Sbjct: 197 ETRVWG--EELPDSDSLRVHIHGLRAVVDKPFDVAMIQTRHGIGYRI 241


>gi|87160864|ref|YP_493348.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194430|ref|YP_499224.1| hypothetical protein SAOUHSC_00665 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151220840|ref|YP_001331662.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508922|ref|YP_001574581.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140875|ref|ZP_03565368.1| response regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253731280|ref|ZP_04865445.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|262048402|ref|ZP_06021287.1| hypothetical protein SAD30_2129 [Staphylococcus aureus D30]
 gi|262051738|ref|ZP_06023956.1| hypothetical protein SA930_1821 [Staphylococcus aureus 930918-3]
 gi|282921949|ref|ZP_06329647.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A9765]
 gi|284023681|ref|ZP_06378079.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|294849329|ref|ZP_06790072.1| two-component system [Staphylococcus aureus A9754]
 gi|304381730|ref|ZP_07364378.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|122540052|sp|Q2G0E0|GRAR_STAA8 RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|123486900|sp|Q2FIY0|GRAR_STAA3 RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|205780168|sp|A6QEW8|GRAR_STAAE RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|205780252|sp|A8Z181|GRAR_STAAT RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|205784951|sp|Q5HI09|GRAR_STAAC RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|87126838|gb|ABD21352.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201988|gb|ABD29798.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150373640|dbj|BAF66900.1| two-component DNA-binding response regulator [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160367731|gb|ABX28702.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725021|gb|EES93750.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|259160349|gb|EEW45375.1| hypothetical protein SA930_1821 [Staphylococcus aureus 930918-3]
 gi|259163490|gb|EEW48047.1| hypothetical protein SAD30_2129 [Staphylococcus aureus D30]
 gi|269940236|emb|CBI48613.1| response regulator protein GraR [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282593802|gb|EFB98793.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A9765]
 gi|294823861|gb|EFG40287.1| two-component system [Staphylococcus aureus A9754]
 gi|300078700|gb|ADJ67248.1| GraR [Staphylococcus aureus]
 gi|300078703|gb|ADJ67250.1| GraR [Staphylococcus aureus]
 gi|300078706|gb|ADJ67252.1| GraR [Staphylococcus aureus]
 gi|302750557|gb|ADL64734.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304339681|gb|EFM05627.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|320140009|gb|EFW31870.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320141900|gb|EFW33728.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313381|gb|AEB87794.1| Response regulator protein graR [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329729913|gb|EGG66305.1| response regulator protein GraR [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 224

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 7/159 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+     
Sbjct: 64  RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  T    V    +D   +G +   L + E  ILE L+  + + V++  I +A++  
Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DEA V +N +  ++++LRKKL        +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGY 220


>gi|15601853|ref|NP_233484.1| DNA-binding response regulator [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121728501|ref|ZP_01681525.1| DNA-binding response regulator [Vibrio cholerae V52]
 gi|147672339|ref|YP_001214980.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|153816730|ref|ZP_01969397.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457]
 gi|153821227|ref|ZP_01973894.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|153827796|ref|ZP_01980463.1| DNA-binding response regulator [Vibrio cholerae 623-39]
 gi|227812668|ref|YP_002812678.1| DNA-binding response regulator [Vibrio cholerae M66-2]
 gi|254284724|ref|ZP_04959691.1| DNA-binding response regulator [Vibrio cholerae AM-19226]
 gi|254850261|ref|ZP_05239611.1| DNA-binding response regulator [Vibrio cholerae MO10]
 gi|262158660|ref|ZP_06029774.1| two-component system response regulator QseB [Vibrio cholerae INDRE
           91/1]
 gi|298499864|ref|ZP_07009670.1| DNA-binding response regulator [Vibrio cholerae MAK 757]
 gi|9658551|gb|AAF96996.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121629219|gb|EAX61657.1| DNA-binding response regulator [Vibrio cholerae V52]
 gi|126512749|gb|EAZ75343.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457]
 gi|126521286|gb|EAZ78509.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|146314722|gb|ABQ19262.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|148876641|gb|EDL74776.1| DNA-binding response regulator [Vibrio cholerae 623-39]
 gi|150425509|gb|EDN17285.1| DNA-binding response regulator [Vibrio cholerae AM-19226]
 gi|227011810|gb|ACP08021.1| DNA-binding response regulator [Vibrio cholerae M66-2]
 gi|227015746|gb|ACP11955.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|254845966|gb|EET24380.1| DNA-binding response regulator [Vibrio cholerae MO10]
 gi|262029540|gb|EEY48190.1| two-component system response regulator QseB [Vibrio cholerae INDRE
           91/1]
 gi|297541845|gb|EFH77896.1| DNA-binding response regulator [Vibrio cholerae MAK 757]
          Length = 218

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    +   +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 63  LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 119

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 120 SGSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE   +N +E HI  LRKKL + L    V + R +GY I+
Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 217


>gi|326804184|ref|YP_004322002.1| putative response regulator protein GraR [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651323|gb|AEA01506.1| putative response regulator protein GraR [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 245

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           ++IR  S VP++ +S   +    +     G DD V KP+    +LA++ A+ RR    ++
Sbjct: 81  QMIRKDSDVPILFLSARDTSMDQVMAMQVGGDDYVTKPVDLPLLLAKIQALLRRAYRYSS 140

Query: 125 RAETGPIRVFSDGR-DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +ET    +F+  + DP       QG+   L   E  IL+ L   +G  V++  +    +
Sbjct: 141 ASETF---IFAGVQLDPTKARLIYQGQASDLTATELLILKQLFQAQGDYVSRESLMEECW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
            L +  +++N +  +IS+LRKKL  KLG  D + +K+ +GY+++
Sbjct: 198 -LGENYIDDNTLAVNISRLRKKL-AKLGLEDFIKTKKRVGYALN 239


>gi|313829791|gb|EFS67505.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|315109590|gb|EFT81566.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
          Length = 243

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
             +G DD V KP    E++AR+ A+ RR   +  + ++    G + +  D R+    GE 
Sbjct: 108 LTAGGDDYVTKPFSLEEVIARLRALLRRSGATEPKPDSMLTVGDLTLDEDSREVRRAGEE 167

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L   E  +L Y M N  + ++K QI   ++  +D   + NVVE +IS LRKK+    G
Sbjct: 168 IHLTTTEFELLRYFMRNPKRVLSKAQILDRVWN-YDFRGQANVVELYISYLRKKIDR--G 224

Query: 207 FDP-VDSKRFLGY 218
             P + + R  GY
Sbjct: 225 HKPMIHTMRGAGY 237


>gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 239

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 19/179 (10%)

Query: 58  EKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E  +++ R +RA  +Q+P+I ++        +   + G DD V KP   RE++ARV A+ 
Sbjct: 58  ESGVDVTRELRAEKNQIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVL 117

Query: 117 RRL--KVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR   K    + ++       G + +  D    +  GE+  L  +E  +L Y+    G+ 
Sbjct: 118 RRFSQKTQTEKEQSVKHSQSYGRLTIDFDKMVVQFDGEIVKLTPKEYELLAYMAEREGRV 177

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
           +++  I   ++G      +  +V+ H+S     LR+K+  DP     + + R  GY  D
Sbjct: 178 LSRETILDGVWGYEFSGPDTRMVDMHLS----HLRDKIELDPKHPVYLKTVRGFGYRFD 232


>gi|300773343|ref|ZP_07083212.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300759514|gb|EFK56341.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 224

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 4/151 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  VL+  +      Q  +I IS   +L   +     G DD + KP H  E++AR+ A
Sbjct: 57  GNGMHVLQTLK--EQEKQDGVIIISAKDALDDKIKGLQIGADDYLTKPFHLSELVARIYA 114

Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR +  N N      +++    +   V     P  ++E  +L Y + N+ K ++K+ +
Sbjct: 115 VIRRKQFQNSNIIVQNELQIDLLAKTVSVGDHAVPFTKKELDLLLYFIGNKNKVISKSTL 174

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
              + G + D     + + +HI  L+KKL++
Sbjct: 175 AEHLSGDVADMLDNHDFIYAHIKNLKKKLQD 205


>gi|229830121|ref|ZP_04456190.1| hypothetical protein GCWU000342_02228 [Shuttleworthia satelles DSM
           14600]
 gi|229791419|gb|EEP27533.1| hypothetical protein GCWU000342_02228 [Shuttleworthia satelles DSM
           14600]
          Length = 223

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 4/148 (2%)

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E  R IRA   + P++ ++    ++  +D  D+G DD + KP    E+LAR+ ++ RR 
Sbjct: 60  VEALRQIRAGGDMTPILLLTAKAEVEDRIDGLDAGADDYLTKPFALGELLARIRSLTRRN 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  S        + +  + ++   Q  +   P +E ++LEYL+ N GK V+  QIF  I+
Sbjct: 120 EDFSPKNLTIADVTLDVEQQEIRAQNAIRLAP-KEAKLLEYLLQNVGKDVSTEQIFERIW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206
              D+  +  +V  +IS LR+K     G
Sbjct: 179 K-DDQEADIGLVWVYISYLRQKFNAITG 205


>gi|229093633|ref|ZP_04224733.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-42]
 gi|228689720|gb|EEL43527.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-42]
          Length = 230

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 18/203 (8%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           ++ LVK+G+      DG   EG N+     +L+ S   D+  ++  ++ K +  LE+ RI
Sbjct: 19  EKYLVKEGFQVTIASDGE--EGVNT-----YLKGSF--DLIILD-IMMPKLDG-LEVVRI 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNR 125
           IR  S VP++ +S   +          G DD + KP    E+ ARV A I R  K S   
Sbjct: 68  IREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKYSATE 127

Query: 126 AETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                I++     DP     E +G+   L  +E  IL+  + N+ +   K QI++ I+  
Sbjct: 128 TTEKTIQIGDLTIDPINFTVEKKGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTLIWN- 186

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
            +   ++NV+  H+ +LR+K+ +
Sbjct: 187 EEYYGDDNVINVHMRRLREKIES 209


>gi|197106157|ref|YP_002131534.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196479577|gb|ACG79105.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 230

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 10/166 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAI 115
           G  VLE  R  R +   P++ ++   +    +  FD+G DD + KP H  E +    A +
Sbjct: 59  GVSVLE--RWRRENMATPVLILTARGAWSEKVAGFDAGADDYLTKPFHTEELLARLRALL 116

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R    +      G +R+        V GE   L   E R+L YLM ++G+ +++T++  
Sbjct: 117 RRSAGHATPNLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQGRVISRTELVE 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y   FD   + N +E  I ++RK    K+G D +++ R LGY +
Sbjct: 177 HLYDQDFDR--DSNTIEVFIGRVRK----KIGADRIETVRGLGYRL 216


>gi|197118229|ref|YP_002138656.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197087589|gb|ACH38860.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 226

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVF 147
           F+ G DD V KP   RE+  RV A+ RR     VS+   E GPI + +D     V GE  
Sbjct: 94  FEVGADDYVVKPFSSRELNLRVKAVLRRSNTETVSSTMIELGPITIDTDRHQVMVNGEEI 153

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
                E ++L  L    G+  ++  +   ++G ++   +   V++HI++LR K+      
Sbjct: 154 FFTSTEFKLLHVLAQRLGRVQSRDVLLRDVWG-YNFVDDSRTVDTHITRLRTKM--GAAG 210

Query: 208 DPVDSKRFLGYSID 221
           D + + R  GY ++
Sbjct: 211 DLIKTVRGFGYKLE 224


>gi|148658695|ref|YP_001278900.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570805|gb|ABQ92950.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 245

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++        +  F+ G DD + KP    E++ARV AI RR++   +R 
Sbjct: 84  IRERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEGYKHRV 143

Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               +RV     D       V+G+   L   E  +L +L AN G    +  +F  ++G +
Sbjct: 144 APPVVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFREVWG-Y 202

Query: 182 DEAVEENVVESHISKLRKKL 201
           D   E N+V+  + +LR+K+
Sbjct: 203 DYVGETNLVDVCVRRLREKV 222


>gi|28798044|emb|CAD69002.1| beta-lactamase response regulator [Aeromonas hydrophila]
          Length = 224

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 11/222 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D A + D  I     DG  +E F+  +         R D   ++  L        EL
Sbjct: 8   LVEDEASIADTLIYALQTDGFEVEWFSLGQPLLARLEQTRPDFLILDVGLPDISG--FEL 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            + +RA    PL+ ++        L   + G DD V KP   RE+ ARV  I RR + + 
Sbjct: 66  CKQVRALCDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVRARVRVILRRSQPTT 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
               +  + +  +       G+   L R E  +L+ LM   G+  ++ Q+   ++    E
Sbjct: 126 P-PPSQLLALDEERARISFHGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWSAAGE 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +++   V++HI  +R KLR +   DP    + + R  GYS++
Sbjct: 185 SLDRT-VDTHIKTIRAKLRER---DPHANLILTHRGFGYSLE 222


>gi|49078508|gb|AAT49792.1| PA2657 [synthetic construct]
          Length = 224

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 7/148 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130
            P++ ++   S    +D   +G DD + KP H  E+   + A+ RR     N++  E   
Sbjct: 73  TPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALHIQALLRRAHGLANQSQLEAAG 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +R+    +   + G    L   E R+L Y M + G+ ++K  +   +Y    E  + NV+
Sbjct: 133 LRLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLYDGETER-DSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E H++ LR+    KLG + ++++R  GY
Sbjct: 192 EVHVNHLRR----KLGREVIETRRGQGY 215


>gi|82751281|ref|YP_417022.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|258424109|ref|ZP_05686991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282916953|ref|ZP_06324711.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770757|ref|ZP_06343649.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|82656812|emb|CAI81241.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|257845730|gb|EEV69762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282319440|gb|EFB49792.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460904|gb|EFC07994.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|298694963|gb|ADI98185.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302333358|gb|ADL23551.1| response regulator OmpR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|323440763|gb|EGA98472.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O11]
 gi|323442918|gb|EGB00541.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O46]
          Length = 234

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQGEVF 147
           G DD + KP   RE++ARV AI RR +      E       G IR+  D  +     E+ 
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRSQFVKEVEEIDDDITIGSIRIRPDYFEVYKHNELL 155

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLG 206
            L  +E  +L YL+  +G+ + +  + + ++  ++ A +  +V+ HIS LR KL  N   
Sbjct: 156 ELTPKEFELLLYLIERQGRVITREHMLNTVWN-YEFAGDSRIVDVHISHLRDKLEDNPKK 214

Query: 207 FDPVDSKRFLGYSID 221
              + + R LGY ++
Sbjct: 215 PQLIKTVRGLGYKLE 229


>gi|238788573|ref|ZP_04632366.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia frederiksenii ATCC 33641]
 gi|238723486|gb|EEQ15133.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia frederiksenii ATCC 33641]
          Length = 235

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 14/163 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +RA  Q P++ +S   ++   +    SG DD + KP    E++AR+ A++RR+   NN  
Sbjct: 66  LRAEKQTPVLMLSARSTVDERVRGLRSGADDYLPKPFSLIELVARIQALHRRMSKDNN-- 123

Query: 127 ETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              P  +  D        R     G    L  +E  +L  L  ++GK ++K  I   ++ 
Sbjct: 124 --DPTHILIDDLQLDLIARKVSRGGIRIDLTAKEFSLLSLLARHQGKILSKMMIADEVWD 181

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + FD   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 182 MNFDS--DANVVEVAIKRLRNKIDTPYAVKLLYTVRGMGYVLE 222


>gi|116628066|ref|YP_820685.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116101343|gb|ABJ66489.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
 gi|312278662|gb|ADQ63319.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus thermophilus ND03]
          Length = 226

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP     +LA++  + RR        
Sbjct: 67  IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + +     D   QGEV  L + E +IL+ L    G  V++  +   ++   D 
Sbjct: 127 SLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERSGNIVSREDLMKELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      D +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGL 222


>gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
 gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
          Length = 233

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 21/223 (9%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           D  L K+GY  +  +DG           E+ ++ +  ED   I   L+   +  +E+ R 
Sbjct: 20  DFNLRKEGYDVIVANDG-----------EKAVKLAFSEDPDLILLDLMLPEKDGMEVCRE 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +RA   +P+I ++   S    +   + G DD V KP   RE++ARV    RR+       
Sbjct: 69  VRAQKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVAKQTEVV 128

Query: 127 E--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           E           I ++ +    +  GE   L RRE  +  YL  +RG+ + +  +   ++
Sbjct: 129 EEKNTSEVVIKDIVIYPEAYIIKKNGEEVDLTRREFDLFYYLAQHRGQVLTRENLLQTVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           G +D   +   V+  + +LR+K+       + + ++R +GY I
Sbjct: 189 G-YDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGYFI 230


>gi|325529261|gb|EGD06214.1| DNA-binding response regulator CreB [Burkholderia sp. TJI49]
          Length = 235

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 17/173 (9%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +   + G DD V KP   RE+ ARV  I RRL  
Sbjct: 64  EVCRRLRTFSDVPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRLNR 123

Query: 122 SNN-----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           S N            A      + ++G      G    L R E  +L  L+ + G+  ++
Sbjct: 124 SPNAGQAGAPAAAAAAVAPGFELDAEGARLSWLGHALDLTRYEFGLLALLVRHPGRIYSR 183

Query: 171 TQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            Q+   ++    EA+E  +  V++H+  LR KLR    G DP+ + R +GYS+
Sbjct: 184 EQLMDLVW---HEALESADRTVDTHVKTLRAKLRAIDPGRDPIRTHRGMGYSL 233


>gi|315618142|gb|EFU98733.1| transcriptional regulatory protein baeR [Escherichia coli 3431]
          Length = 240

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  + + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|307325774|ref|ZP_07604974.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306888562|gb|EFN19548.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 4/134 (2%)

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVF 147
           D  D G DD + KP  +  + AR+ A+ RR  +        G + +   GR     G   
Sbjct: 89  DGLDIGADDYLTKPFSYVVLTARLHALIRRGHIPRPPVLSVGDLLLDPGGRTCVRAGTPI 148

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLG 206
            L  RE  +LEYL+ + G+ V+K +I + ++   FD  ++ NVVE +I  LR+K+     
Sbjct: 149 ELTTREFSLLEYLVRHEGQVVSKQEILTHVWAEHFD--LDPNVVEVYIGYLRRKIDTPFR 206

Query: 207 FDPVDSKRFLGYSI 220
              +++ R  GY +
Sbjct: 207 VRSIETVRGAGYRL 220


>gi|300917087|ref|ZP_07133778.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300415654|gb|EFJ98964.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
          Length = 240

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  + + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|289425716|ref|ZP_06427471.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289153822|gb|EFD02528.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
          Length = 243

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
             +G DD V KP    E++AR+ A+ RR   +  + ++    G + +  D R+    GE 
Sbjct: 108 LTAGGDDYVTKPFSLEEVIARLRALLRRSGATEPKPDSMLTVGDLTLDEDSREVRRAGEE 167

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L   E  +L Y M N  + ++K QI   ++  +D   + NVVE +IS LRKK+    G
Sbjct: 168 IHLTTTEFELLRYFMRNPKRVLSKAQILDRVWN-YDFRGQANVVELYISYLRKKIDR--G 224

Query: 207 FDP-VDSKRFLGY 218
             P + + R  GY
Sbjct: 225 HKPMIHTMRGAGY 237


>gi|225375516|ref|ZP_03752737.1| hypothetical protein ROSEINA2194_01141 [Roseburia inulinivorans DSM
           16841]
 gi|225212651|gb|EEG95005.1| hypothetical protein ROSEINA2194_01141 [Roseburia inulinivorans DSM
           16841]
          Length = 220

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-------NRAETGPIRVFSDG 137
            T +  FD G +D + KP   RE+LARV    RR+  +N       N    G   + +D 
Sbjct: 84  NTIVRAFDEGAEDYIVKPFRIRELLARV----RRILSANIKNGEKDNIIYMGHAAIHTDE 139

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
               V  ++  L   E R+L    +N+G  + + QI   I+      VE+N +  ++ +L
Sbjct: 140 AKVYVNDKIIELTALEYRLLLIFASNKGILLTRQQILDKIWDADGNFVEDNTLTVYVKRL 199

Query: 198 RKKLRNKLGFDPVDSKRFLGYSID 221
           R+KL   +  + V   R +GY +D
Sbjct: 200 REKLGEAIHIETV---RGMGYRVD 220


>gi|239629508|ref|ZP_04672539.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239528194|gb|EEQ67195.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 232

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 4/155 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA + VP+I ++   + +  +    +G DD V KP    E+ AR+ A +RR      RA
Sbjct: 75  IRAITSVPIIFLTARVTDEDKVRGLGAGGDDYVTKPFSLAELGARIKAHFRRESQPQKRA 134

Query: 127 ETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                 ++  D R  +V    +V  L +++ +++E L  N G+  ++ Q++  I+G +D 
Sbjct: 135 RMAIFDQILIDYRAKQVSIGDQVLSLEKKQYQLVELLSLNPGQVFSREQLYEKIWG-YDA 193

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++ V+  HI ++R          P+++   +GY
Sbjct: 194 LGDDRVITEHIRRIRLLFDRYQVTSPIETVWGVGY 228


>gi|212637427|ref|YP_002313952.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212558911|gb|ACJ31365.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 245

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVF 147
            +SG DD + KP    E+ ARV A+ RR   +   +   E   I +  + R+     E  
Sbjct: 104 LESGADDYLVKPFSVLELRARVKALLRRGTQIAHQDESLEFNGISINCNTREVIAFNETL 163

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLG 206
            L  RE  +L YL  +  +  ++ Q+  A++G +  +  E+ V SHI++LR KL RN   
Sbjct: 164 ELTAREFDLLLYLAQHPKQVFSRMQLLEAVWG-YSYSGYEHTVNSHINRLRNKLARNACT 222

Query: 207 FDPVDSKRFLGY 218
            D V +   +GY
Sbjct: 223 TDLVKTVWGVGY 234


>gi|220909111|ref|YP_002484422.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865722|gb|ACL46061.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 263

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           S +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR       A+   
Sbjct: 75  SAIPILMLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRRTDRIPQAAKHSE 134

Query: 129 ----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               GP+ +  +  +     +V  L R E  +L  L+   G+ VA ++I   ++G +D  
Sbjct: 135 ILSYGPLTLIPERFEVVWLDKVIKLTRLEFELLHCLLQRHGQTVAPSEILKEVWG-YDPD 193

Query: 185 VEENVVESHISKLRKKL 201
            +   +  H+  LR KL
Sbjct: 194 DDIETIRVHVRHLRTKL 210


>gi|149002911|ref|ZP_01827822.1| response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147758914|gb|EDK65909.1| response regulator [Streptococcus pneumoniae SP14-BS69]
          Length = 158

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK----------VSNNRAETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LARV A+ RR K          ++++    G ++V+ +  +    
Sbjct: 19  GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 78

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  L  +E  +L YLM +    + + ++   I+G +D   E  +V+ HI KLR+K+ +
Sbjct: 79  NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 137


>gi|86751280|ref|YP_487776.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86574308|gb|ABD08865.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 241

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   +L R IR  S VP++ ++     +  ++    G DD V KP   RE+L R+  I 
Sbjct: 74  GETGFDLARFIRTESDVPIVMLTARHEAEARIEGLQLGADDYVAKPFEPRELLLRICNIL 133

Query: 117 RRLK-VSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171
           +R      ++AET   GP  VF   R    QG E   L  RER +L  L A  G+ V + 
Sbjct: 134 KRTSPAPASKAETIAFGPY-VFHIDRGELRQGDETIHLTDRERDMLRVLAAAPGETVPRG 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++             E  V+  I++LR+K+
Sbjct: 193 ELTGG-----GGNANERAVDVQINRLRRKI 217


>gi|15924683|ref|NP_372217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927271|ref|NP_374804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|57650564|ref|YP_186577.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus COL]
 gi|87162022|ref|YP_494334.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195500|ref|YP_500304.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148268173|ref|YP_001247116.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394240|ref|YP_001316915.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221798|ref|YP_001332620.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156980010|ref|YP_001442269.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509907|ref|YP_001575566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221142557|ref|ZP_03567050.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253317163|ref|ZP_04840376.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253732344|ref|ZP_04866509.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734523|ref|ZP_04868688.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006477|ref|ZP_05145078.2| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794078|ref|ZP_05643057.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|258415782|ref|ZP_05682053.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|258421981|ref|ZP_05684901.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|258438261|ref|ZP_05689545.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|258443719|ref|ZP_05692058.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|258445930|ref|ZP_05694106.1| response regulator [Staphylococcus aureus A6300]
 gi|258448389|ref|ZP_05696506.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|258451793|ref|ZP_05699815.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|258454130|ref|ZP_05702101.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|262048663|ref|ZP_06021546.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262052264|ref|ZP_06024469.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|269203311|ref|YP_003282580.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282893188|ref|ZP_06301422.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|282920233|ref|ZP_06327958.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282927823|ref|ZP_06335434.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|284024741|ref|ZP_06379139.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848714|ref|ZP_06789460.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|295406003|ref|ZP_06815811.1| two-component system [Staphylococcus aureus A8819]
 gi|296274880|ref|ZP_06857387.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245071|ref|ZP_06928948.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|304380716|ref|ZP_07363385.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13701489|dbj|BAB42783.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247465|dbj|BAB57855.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|57284750|gb|AAW36844.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus COL]
 gi|87127996|gb|ABD22510.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203058|gb|ABD30868.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741242|gb|ABQ49540.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946692|gb|ABR52628.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374598|dbj|BAF67858.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156722145|dbj|BAF78562.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368716|gb|ABX29687.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723866|gb|EES92595.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727464|gb|EES96193.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257788050|gb|EEV26390.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|257839375|gb|EEV63848.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|257842025|gb|EEV66454.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|257848305|gb|EEV72296.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|257851125|gb|EEV75068.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|257855172|gb|EEV78111.1| response regulator [Staphylococcus aureus A6300]
 gi|257858357|gb|EEV81242.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|257860505|gb|EEV83331.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|257863582|gb|EEV86339.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|259159865|gb|EEW44904.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|259163310|gb|EEW47869.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262075601|gb|ACY11574.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269941173|emb|CBI49560.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus TW20]
 gi|282590333|gb|EFB95412.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|282594581|gb|EFB99566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282764506|gb|EFC04632.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|285817376|gb|ADC37863.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 04-02981]
 gi|294824740|gb|EFG41163.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|294969000|gb|EFG45021.1| two-component system [Staphylococcus aureus A8819]
 gi|297178151|gb|EFH37399.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|302751519|gb|ADL65696.1| response regulator OmpR [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340715|gb|EFM06646.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312830071|emb|CBX34913.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130673|gb|EFT86659.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315198610|gb|EFU28938.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140428|gb|EFW32282.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143967|gb|EFW35736.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314365|gb|AEB88778.1| Two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329727125|gb|EGG63581.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21172]
 gi|329728426|gb|EGG64863.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21189]
 gi|329733213|gb|EGG69550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21193]
          Length = 234

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQGEVF 147
           G DD + KP   RE++ARV AI RR +      E       G IR+  D  +     E+ 
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRSQFVKEVEEIDDDITIGSIRIRPDYFEVYKHNELL 155

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLG 206
            L  +E  +L YL+  +G+ + +  + + ++  ++ A +  +V+ HIS LR KL  N   
Sbjct: 156 ELTPKEFELLLYLIERQGRVITREHMLNTVWN-YEFAGDSRIVDVHISHLRDKLEDNPKK 214

Query: 207 FDPVDSKRFLGYSID 221
              + + R LGY ++
Sbjct: 215 PQLIKTVRGLGYKLE 229


>gi|331005376|ref|ZP_08328760.1| putative two-component response regulator transcription regulator
           protein [gamma proteobacterium IMCC1989]
 gi|330420830|gb|EGG95112.1| putative two-component response regulator transcription regulator
           protein [gamma proteobacterium IMCC1989]
          Length = 236

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 106/227 (46%), Gaps = 24/227 (10%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L  +GY     +DG +  G  + E  +  + +A + +  ++  +       LE+ + +
Sbjct: 18  RGLKAEGYQTELAEDGATGLGL-ARELHKAFRDNAEKSLVILDIMM--PEMNGLEVCQQL 74

Query: 68  RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           RA    +P++ ++        +    +G DD + KP    E+LAR+  + RR        
Sbjct: 75  RAEGFPLPILMLTALNDTDDRVTGLRTGADDYLGKPFDFEELLARIEGLARRGLVAPDKQ 134

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L V++   +   +RVF    D E+      L  +E  +LE +M + G+  ++ +I 
Sbjct: 135 RAKQLSVADLHLDLDSMRVFRG--DEEIS-----LTAKELALLELMMRSVGRLFSRERIL 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++GL ++ +  N+V+ +I +LR K+        + ++R LGY ++
Sbjct: 188 SNVWGLNEDPL-TNIVDVYIRRLRNKIDTDNKPQLIHTQRGLGYRLE 233


>gi|295107250|emb|CBL04793.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 230

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 5/162 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R +R H   P++ ++        L+ F  G DD V KP     + ARV A   R +
Sbjct: 66  FEVCRRLREHLTCPILFLTARVEDVDALEGFACGADDYVLKPFSLAVLGARVDAHLARDQ 125

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               RAE    G + V    R   V G    L RRE  I+ +L  + G+   + +I   +
Sbjct: 126 CQQVRAEVRFDGDLAVDYRTRTVTVAGAPVELTRREFDIVAFLSKHPGQVFDRDRIHERV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218
            G  +E+ +  VV  HI ++RKKL       DPV++   +GY
Sbjct: 186 GGWENES-DSQVVTEHIRRIRKKLAAAGTEHDPVETVWGMGY 226


>gi|257868543|ref|ZP_05648196.1| response regulator [Enterococcus gallinarum EG2]
 gi|257802707|gb|EEV31529.1| response regulator [Enterococcus gallinarum EG2]
          Length = 231

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL +IIR    VPLI IS   +    +   D G DD V KP    E+LAR+   +R   
Sbjct: 65  MELLKIIRKRMAVPLIVISARSNESEKVKALDLGADDYVTKPFGMNELLARIRTAFR--- 121

Query: 121 VSNNRAETGPIRVFSDGR---DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             + + E  P+ V  +G    D E Q     G    L + E RIL  L  + GK V    
Sbjct: 122 --HRKQEPMPL-VIKNGELTLDTERQLLTKAGTEIHLTKNEYRILTVLFQHLGKVVTYQT 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + + ++G +    +  V+  ++S +RKK+  N +  + + ++  LGY +
Sbjct: 179 LATEVWGPY--GTDPQVLRVNMSNIRKKIETNTISPEYLITEIGLGYRL 225


>gi|261820614|ref|YP_003258720.1| BaeR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604627|gb|ACX87113.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 242

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 11/172 (6%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           EW++  +    S I   L+  G   L + R IR  S VP+I ++        L   + G 
Sbjct: 48  EWVRQHSP---SLILLDLMLPGCDGLTICRTIRQFSNVPIIMVTARSEEIDRLLGLEIGA 104

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNN------RAETGPIRVFSDGRDPEVQGEVFPL 149
           DD + KP   RE++ RV  + RR    N+      ++ET  + +   G      G+   L
Sbjct: 105 DDYICKPFSPREVVVRVRTLLRRCGWQNDGMKAAEKSETA-LLIDKSGFQASYLGQNLDL 163

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              E R+L+ L    GK  ++  +   +Y  +   V +  ++SHI  LR+KL
Sbjct: 164 TPAEFRLLKTLSTEPGKVFSREALLDKLYDDY-RVVTDRTIDSHIKNLRRKL 214


>gi|212691246|ref|ZP_03299374.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855]
 gi|237712324|ref|ZP_04542805.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|237726460|ref|ZP_04556941.1| two-component system response regulator [Bacteroides sp. D4]
 gi|265752033|ref|ZP_06087826.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
 gi|212666478|gb|EEB27050.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855]
 gi|229434986|gb|EEO45063.1| two-component system response regulator [Bacteroides dorei
           5_1_36/D4]
 gi|229453645|gb|EEO59366.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|263236825|gb|EEZ22295.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
          Length = 229

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 78/151 (51%), Gaps = 8/151 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  + +  +A + +P+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ 
Sbjct: 61  GFKMANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120

Query: 117 RRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR      K    + +   + V    +   + G    L ++E  IL  L+ N+G+  ++ 
Sbjct: 121 RRTSPTQGKEVQEQLQYKGLLVDITKKKVSIDGIEISLTKKEFEILLLLLQNKGRVFSRE 180

Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
            I + ++   +E  V +  ++ +I++LRKK+
Sbjct: 181 DILAKVWQ--EEVYVLDRTIDVNITRLRKKI 209


>gi|146338490|ref|YP_001203538.1| OmpR family two component response transcriptional regulator
           [Bradyrhizobium sp. ORS278]
 gi|146191296|emb|CAL75301.1| putative two-component response regulator (OmpR family)
           [Bradyrhizobium sp. ORS278]
          Length = 221

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 4/150 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ ++   ++   +   D G DD + KP  +RE+ AR  A+ RR    S+N    GP
Sbjct: 72  RTPVLVLTARSAVDDRIGALDLGADDYLIKPFDYRELEARARALLRRAAGQSDNLLTLGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +   GR   V G+   L RRE  +LE L A  G+ VAK ++   ++  FD+    N V
Sbjct: 132 LVIDRAGRTASVAGQPLDLTRRELTVLEILAARPGRYVAKEELVEQLFS-FDQDPSPNAV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E  I++LR+KL        + ++R LGY +
Sbjct: 191 EQFIARLRRKLAAT--SVEIKTERGLGYQL 218


>gi|146300629|ref|YP_001195220.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146155047|gb|ABQ05901.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 220

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L + IR    + P+I ++   ++Q T++   +G +D + KP    E++ RV  I+ R 
Sbjct: 60  LDLCKAIRIKDKKTPIIFLTAKDTVQETIEGLRAGANDYIKKPFSFEELVERV-KIHFRN 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K ++     G I V           E   L +RE  +L YL+  +GK   + +I   ++ 
Sbjct: 119 KATDEILTLGNITVDLSKHIVLKNDEEINLTQREFELLTYLIRKKGKVCTRNEILKDVWD 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  E  +  V++  ++ +RKKL  K+  D + + R +GY
Sbjct: 179 INFEY-DTGVIDVFMNAIRKKLNLKIEEDYIKTIRGIGY 216


>gi|15893941|ref|NP_347290.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023528|gb|AAK78630.1|AE007581_1 Response regulator (CheY-like receiver domain and HTH DNA binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325508068|gb|ADZ19704.1| Response regulator (CheY-like receiver domain and HTH DNA binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 221

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 2/131 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            DSG DD + KP   +E+ AR+ A+ RR     +N  +   + + +  +  +V  ++  L
Sbjct: 91  LDSGADDYLGKPFEFKELRARLHALIRRNYNKPSNEIKIKDLNIDTKAKSVKVGEKLITL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             RE  ILE L  N    V+  +I   ++G  D     NV+  HI+ LR+K++   G   
Sbjct: 151 TAREYDILELLCYNYPNIVSAEEIIEHVWGDNDNQF-SNVIRVHIANLRRKIKCSGGETL 209

Query: 210 VDSKRFLGYSI 220
           +++ +  GY +
Sbjct: 210 IETLKGKGYRL 220


>gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 255

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S VP+I +S    +   +   D G DD + KP   +E+ AR+A I RRL  S N
Sbjct: 77  RELRKLSDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRRLDDSPN 136

Query: 125 --RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              A + P       + + ++ R    +GE  PL   E  +LE L    G+ V + +I  
Sbjct: 137 ALSAPSSPGVLRISDVEIDTNRRQVFQRGERVPLTYTEFSLLELLFRQPGRVVPRAEILE 196

Query: 176 AIYGLFD-EAVEENVVESHISKLRKKL 201
            ++G       +  VV+ ++++LR KL
Sbjct: 197 ELWGYPPRRNADLRVVDVYVARLRSKL 223


>gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis AF2122/97]
 gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T92]
 gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T17]
 gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           T46]
 gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG]
 gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis
           AF2122/97]
 gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
          Length = 230

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 10/147 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173
           K   + AE+  +R FSD     V  EV        L R E  +LE L+AN  + + +++I
Sbjct: 122 K-PEDAAESMAMR-FSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200
              ++G FD     N +E ++  LR+K
Sbjct: 180 LEEVWG-FDFPTSGNALEVYVGYLRRK 205


>gi|17545262|ref|NP_518664.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17427553|emb|CAD14071.1| probable response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 246

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 15/171 (8%)

Query: 61  LELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++L  ++R+  Q  +P++ ++     +  +     G DD + KP H  E+ ARV A+ RR
Sbjct: 60  IDLLSVVRSRHQEVLPILFVTAEARERGLVRALGQGADDYITKPFHIPELRARVEALLRR 119

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +  +      GP       R   + G    L   E ++   L AN G+ +++  IF 
Sbjct: 120 AHPVPYAGMPFAVGPYYFHPQRRLVTLHGAPLALTGIEFQLAMLLFANAGRTLSRDHIFG 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL-----GYSID 221
            ++G  + A     ++SH+S++R KLR     +PV+  R +     GY +D
Sbjct: 180 QVWGR-NSAEYTRTIDSHVSRIRLKLR----LEPVNEVRLVAVYKHGYRLD 225


>gi|119714578|ref|YP_921543.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119535239|gb|ABL79856.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 233

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 15/187 (8%)

Query: 27  EGFNSLEFEEWLQSSARE-----DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           +GF      + L++ AR      DV  ++  L   G   +E+ R +R  S   ++ ++  
Sbjct: 26  DGFAVTIVHDGLEAVARSREVDPDVVVLDLGL--PGLDGVEVCRRLRTFSDGYVVMLTAR 83

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSD---- 136
                TL     G DD + KP   RE++ARV A+ RR + + +  A+ G    F D    
Sbjct: 84  SDEVDTLIGLSVGADDYLTKPFSPRELVARVQAMLRRPRPLGHMDADAGEALSFGDLTIE 143

Query: 137 --GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
             GRD  ++    PL R E  +L  L    G   ++ Q+  A++G      +E++V+ H+
Sbjct: 144 LAGRDVWLEDRAVPLTRTEFDLLATLAQRPGMAFSRRQLIDAVWGPA-WVGDEHLVDVHV 202

Query: 195 SKLRKKL 201
             LR KL
Sbjct: 203 GHLRHKL 209


>gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 225

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 10/210 (4%)

Query: 16  IALFGDDGVSLEGFN-SLEFEEW----LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           IA F   G+SLEG+   + F+      L S+   D+  ++  L   G   LE+ R +RA 
Sbjct: 13  IASFLRRGLSLEGYQVDVAFDGTRGLELASTGTYDLIVLDLML--PGIDGLEVARRLRAD 70

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAET 128
           S VP+I ++   +++  +   ++G DD + KP    E+LAR+ A  RR +   + +    
Sbjct: 71  SNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRRQSGQAQDVLRF 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             + + +  R+  V      L  +E  +LE  M +  + + +  I+  ++  +D   E N
Sbjct: 131 ANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDIIYDRVWN-YDFGGESN 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++E ++  LR+KL        + + R +GY
Sbjct: 190 ILEVYVRYLRQKLEANGEPRLIHTVRSVGY 219


>gi|330685760|gb|EGG97395.1| response regulator protein GraR [Staphylococcus epidermidis VCU121]
          Length = 198

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 9/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ A+YRR+    V
Sbjct: 38  RKMRQVSNVPILFLSSRDNPMDQVMSMELGADDYIQKPFYTNVLIAKLQAVYRRVYEFGV 97

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R       V    +D   +G +   L + E  ILE L+  R + V++  + +A++  
Sbjct: 98  EEKRTLNWQDAVVDLSKDSIQKGDQAIFLSKTEMIILEMLVNKRNQIVSRDTLITALWD- 156

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
            DEA V +N +  ++++LRKKL +++G D  +++K   GY
Sbjct: 157 -DEAFVSDNTLTVNVNRLRKKL-SEIGMDSAIETKVGKGY 194


>gi|325914197|ref|ZP_08176549.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325539581|gb|EGD11225.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 238

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 31/195 (15%)

Query: 51  AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           A L G+G +++            E+ R IR  S VP+I ++        +   D+G +D 
Sbjct: 48  ALLAGQGAELVVLDIGLPDRDGHEVLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDY 107

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150
           V KP   +E++AR+ A+ R+    +   E+    VF DG        R+  + GE  PL 
Sbjct: 108 VTKPFGVQELMARIRALLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLDGEAIPLS 163

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG---- 206
           R+E  +L  L+ + G+ V + Q+   ++G   E  + + +   + KLR+KL +       
Sbjct: 164 RKEYALLALLLKHAGRVVTQPQLLREVWGPTHEE-DTHYLRILVGKLRQKLHDDAAAPHY 222

Query: 207 --FDPVDSKRFLGYS 219
              +P    RF+G +
Sbjct: 223 IVTEPGVGLRFIGVT 237


>gi|325273594|ref|ZP_08139816.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324101272|gb|EGB98896.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 19/165 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           IR  S+V +I ++    L   L   D G DD + KP    E+LAR+ ++ RR        
Sbjct: 66  IRKTSRVRIIMLTGRGRLHDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGDKVVDHP 125

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+V++   + G  R F      E+  + F L       L  LM++ G+ + ++QI S +
Sbjct: 126 TLRVADLELDPGRHRAFRGDLRVELTTKEFAL-------LRLLMSHPGEALTRSQIISLV 178

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + FD   + NV++  I +LR K+ +      + + R +GY I+
Sbjct: 179 WDMNFD--CDTNVIDVAIRRLRAKIDDPFENKLIHTLRGVGYVIE 221


>gi|320012489|gb|ADW07339.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 275

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 20/202 (9%)

Query: 9   ALVKDGYIALFGDD-GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           A V  GY+   G D G + +G  +LE      ++ R D+  ++  L G G    E+ R I
Sbjct: 55  AEVAAGYLGRAGYDVGRADDGPAALES----VAALRPDLVVLDLMLPG-GMDGFEVCRRI 109

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           RA   VP+I ++        +   ++G DD V KP   RE++ RV A+ RR +    R E
Sbjct: 110 RARGPVPVIMLTARGDEDDRILGLETGADDYVTKPFSPRELVLRVEAVLRRWR----RTE 165

Query: 128 TGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            GP        I +    R     GE   L  RE  +L + + N G+   + ++   ++G
Sbjct: 166 PGPSAGIGGAGIVLEPLARRATRGGEDLCLTLREFDLLAFFLRNPGRAYTREELMREVWG 225

Query: 180 LFDEAVEENVVESHISKLRKKL 201
              +  + + V  H+ +LR K+
Sbjct: 226 W--DFGDLSTVTVHVRRLRGKV 245


>gi|314937032|ref|ZP_07844379.1| DNA-binding response regulator [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655651|gb|EFS19396.1| DNA-binding response regulator [Staphylococcus hominis subsp.
           hominis C80]
          Length = 224

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 9/160 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121
           R IR  S VP++ +S   +    +   + G DD + KP H   ++A++ AIYRR+    V
Sbjct: 64  RQIRQVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFHTNVLIAKLQAIYRRVYQFGV 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R       +    +D   +G+ +  L + E  ILE L+  + + V +  + +A++  
Sbjct: 124 EERRTLNWQDALVDLSKDSIQKGDKIIYLSKTEMIILEMLIQKQNQIVTRDTLITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            DEA V +N +  ++++LRKKL +++G +  +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKL-SEIGMETEIETKVGKGY 220


>gi|313110946|ref|ZP_07796786.1| hypothetical protein PA39016_002870021 [Pseudomonas aeruginosa
           39016]
 gi|310883288|gb|EFQ41882.1| hypothetical protein PA39016_002870021 [Pseudomonas aeruginosa
           39016]
 gi|327482584|gb|AEA85894.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri DSM 4166]
          Length = 219

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 19/165 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           IR  S+V +I ++    L   L   D G DD + KP    E+LAR+ ++ RR        
Sbjct: 61  IRKTSRVRIIMLTGRGRLHDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGDKVVDHP 120

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+V++   + G  R F      E+  + F L       L  LM++ G+ + ++QI S +
Sbjct: 121 TLRVADLELDPGRHRAFRGDLRVELTTKEFAL-------LRLLMSHPGEALTRSQIISLV 173

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + FD   + NV++  I +LR K+ +      + + R +GY I+
Sbjct: 174 WDMNFD--CDTNVIDVAIRRLRAKIDDPFENKLIHTLRGVGYVIE 216


>gi|301065608|ref|YP_003787631.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|300438015|gb|ADK17781.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 232

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 4/155 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA + VP+I ++   + +  +    +G DD V KP    E+ AR+ A +RR      RA
Sbjct: 75  IRAITSVPIIFLTARVTDEDKVRGLGAGGDDYVTKPFSLAELGARIKAHFRRESQPQKRA 134

Query: 127 ETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                 ++  D R  +V    +V  L +++ +++E L  N G+  ++ Q++  I+G +D 
Sbjct: 135 RMAIFDQILIDYRAKQVSIDDQVLSLEKKQYQLVELLSLNPGQVFSREQLYEKIWG-YDA 193

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++ V+  HI ++R          P+++   +GY
Sbjct: 194 LGDDRVITEHIRRIRLLFDRYQVTSPIETVWGVGY 228


>gi|300788203|ref|YP_003768494.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|261597219|gb|ACX85477.1| AmrE [Amycolatopsis mediterranei U32]
 gi|299797717|gb|ADJ48092.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 228

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 7/131 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP   RE+ ARV  + RR       AET   G  RV    R          L 
Sbjct: 100 GADDYLTKPFSPRELAARVRTVLRRAAGVAPAAETFAVGGARVDVLSRRAWAGDAEIVLT 159

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
             E  +L +L+ + G+ +++ Q+ SA++G +  A     V+ H+++LR KL       P+
Sbjct: 160 STEFDLLTHLLRHPGQVLSRDQLLSAVWG-YAAAAGTRTVDVHVAQLRAKLGAS---SPI 215

Query: 211 DSKRFLGYSID 221
            + R +GY+ D
Sbjct: 216 RTVRGIGYAAD 226


>gi|262193593|ref|YP_003264802.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262076940|gb|ACY12909.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 227

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R +R    VP+I +S        +   + G DD V KP   RE+  RV A+ RR+ 
Sbjct: 63  LNLCRKLRERGDVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRRVA 122

Query: 121 VSNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +  P  V+     DP      V  +   L   E R+L  ++   G+ + ++Q+ 
Sbjct: 123 ARRGADDAPPALVYERLTLDPAAHELRVDDDKIALTVTEFRVLHAILERPGRVLTRSQLI 182

Query: 175 SAIY--GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              Y  GL    V E  +++HI ++R KLR   G + +++   LGY
Sbjct: 183 DRAYEDGLH---VSERTIDTHIRRIRAKLR-PYGIEAIETVHGLGY 224


>gi|254429139|ref|ZP_05042846.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195308|gb|EDX90267.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 225

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 20/166 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------- 119
           +R HS++P++ ++        +   + G DD V KP   RE++AR+ AI +RL       
Sbjct: 67  LRQHSELPVLFLTARQDEVDRILGLELGGDDYVTKPFSPREVVARIRAILKRLGPKSDAD 126

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K +  + +   +RVF   R  E+      L R E RIL  ++   G+  ++ Q+  
Sbjct: 127 IDTNKTTLWQVDDSGLRVFF--RHTELS-----LTRSEYRILTTMVQRPGQVFSRAQLLD 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                 DE   E  V++HI  LR KLR   G   + ++R +GY +D
Sbjct: 180 ICDS--DEDSFERSVDTHIKTLRAKLRPLNGDHLIVTRRGIGYLLD 223


>gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41]
 gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 8/142 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR     + +
Sbjct: 68  IREEKSMPIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRSSKYNVNM 127

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            NN+   E G + + +D R   VQ +   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 128 KNNKKIIEIGNLVINTDTRQVIVQEKEIRLTPKEFDILELLAYNKGIVLSIQKIYEAVWK 187

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             D    +N V  HI+ +R+K+
Sbjct: 188 -EDYFKSDNTVMVHITNIREKI 208


>gi|167628753|ref|YP_001679252.1| transcriptional regulator [Heliobacterium modesticaldum Ice1]
 gi|167591493|gb|ABZ83241.1| transcriptional regulator [Heliobacterium modesticaldum Ice1]
          Length = 232

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 13/164 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+   +R  + VP+I I+   +          G DD V KP +  E++ARV A  RR +
Sbjct: 63  IEICHELRKKTDVPIIFITSRDAPHEVALGLGIGGDDYVKKPFNPVEVVARVRAQLRRFR 122

Query: 121 VSNNRAETGP-IRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 E  P +  F D       R  E++GE   L  +E  +L +L  N  +  +  Q+
Sbjct: 123 KQCALQEDEPAVLAFGDLRINLFDRTVEMKGERVELTVKEYDLLLFLAQNPNRYFSSDQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
             A++     ++ +  + +HIS LR+    KLG DP DS R++ 
Sbjct: 183 IEAVWN-HPRSISQKALMTHISNLRR----KLGEDP-DSPRYIA 220


>gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638]
 gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 238

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR  ++ +P+I IS   S    +   ++G DD + KP   +E++AR+ A++RR 
Sbjct: 64  LEICRRIRQLTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 123

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        G I       DP     ++ G+   L  RE  +L +   + G+  ++  + 
Sbjct: 124 QAMGLAQTNGQIYAHGLALDPLLRSVQLNGKEVVLTPREFELLYFFARHPGEVFSRLALL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G   E   E+ V +HI++LR K+
Sbjct: 184 EQVWGYQHEGY-EHTVNTHINRLRIKI 209


>gi|28869098|ref|NP_791717.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28852338|gb|AAO55412.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 220

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 24/218 (11%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL  +GY   + +DG+S    ++L  E +        +  ++ F         +L R +R
Sbjct: 19  ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           A    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR   S  RA 
Sbjct: 68  AEELALPVLILTARDGTANRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   I +    +    QG    +   E ++L  LM   GK V + ++ + +YG + +
Sbjct: 125 PLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE N +E  I  LRKKL  +L    + + R +GY ++
Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217


>gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 231

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N   ++ E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSSKNEDGMIRIRSAEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|88703476|ref|ZP_01101192.1| Phosphate regulon transcriptional regulatory protein phoB
           [Congregibacter litoralis KT71]
 gi|88702190|gb|EAQ99293.1| Phosphate regulon transcriptional regulatory protein phoB
           [Congregibacter litoralis KT71]
          Length = 236

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 6/164 (3%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           R D+  ++  L G G  +  L R+ R     ++P+I ++   +    +   + G DD + 
Sbjct: 47  RPDIVLLDWMLPG-GSGIELLRRLKRDDTTQEIPVIMLTAKTAEDNVIQGLEVGADDYIT 105

Query: 101 KPIHHREILARVAAIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           KP   RE++AR+ A+ RR  V  S +R +   + +    R   +  E   +   E  +L+
Sbjct: 106 KPFAPRELIARIKALLRRSGVGESADRMQVSELVLDGKSRRVYLADEPLDMGPTEFNLLQ 165

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           + M++  +  ++ Q+   ++G  +  VEE  V+ HI +LRK L+
Sbjct: 166 FFMSHPERAYSRNQMLDQVWGA-NVYVEERTVDVHIRRLRKALQ 208


>gi|126176488|ref|YP_001052637.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|125999693|gb|ABN63768.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
          Length = 229

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 82/162 (50%), Gaps = 14/162 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123
           +R H +VP++ ++     +  +   ++G +D ++KP   RE++AR+  + R L      +
Sbjct: 68  LRQHDKVPVLILTARDQEEEKIRLLEAGANDYLSKPFGIRELIARIKVLVRDLVDEPALS 127

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  + G +++        +  +   L ++E  ++E LM++ G+ V +T++   I+G    
Sbjct: 128 DVLQFGALKLQKSTHQLWLDQQEIALTKKEFALMETLMSHPGQLVKQTELLRDIWG---- 183

Query: 184 AVEENVVESH-----ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E +  +SH     +S+LRKKL +      + ++  LGY +
Sbjct: 184 --ETHTDDSHYLRILVSQLRKKLNDSTEQQLIKTEAGLGYRL 223


>gi|332286633|ref|YP_004418544.1| phosphate regulon two-component response regulator [Pusillimonas
           sp. T7-7]
 gi|330430586|gb|AEC21920.1| phosphate regulon two-component response regulator [Pusillimonas
           sp. T7-7]
          Length = 233

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 8/168 (4%)

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   + L R +R+      VP+I ++   +    ++  ++G DD + KP   +E++AR+ 
Sbjct: 58  GASGITLARTLRSDERTRHVPVIMLTAKGAEHDKVEGLEAGADDYITKPFSPKELIARIK 117

Query: 114 AIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR   +++++  + G +++          G+   +   E R+L + M +  +  ++ 
Sbjct: 118 AVLRRRAPQLTDDIIQIGGLKLDPATHRVTGGGQTLTVGPTEFRLLHFFMTHTERVFSRA 177

Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           Q+   ++G  D   VEE  V+ HI +LRK L      + +++ R  GY
Sbjct: 178 QLLDQVWG--DHVFVEERTVDVHIRRLRKALEPGKLENHIETVRGAGY 223


>gi|290770180|gb|ADD61939.1| putative protein [uncultured organism]
          Length = 230

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 17/146 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR    N +A
Sbjct: 67  IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMEELIARIASLIRRYTRFNQQA 126

Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             G I+  +        + R        F LP +E  +L Y   ++GK + K QI+  ++
Sbjct: 127 --GAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 184

Query: 179 G---LFDEAVEENVVESHISKLRKKL 201
           G    +D++   N++ + IS+LRKKL
Sbjct: 185 GEEYFYDDS---NIM-AIISRLRKKL 206


>gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 241

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR  ++ +P+I IS   S    +   ++G DD + KP   +E++AR+ A++RR 
Sbjct: 67  LEICRRIRQMTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 126

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        G I+      DP      + G+   L  RE  +L +   + G+  ++  + 
Sbjct: 127 QAMGQAQTDGIIQAHGLTIDPLARTVRLNGQHVDLTPREFELLYFFARHPGEVFSRLALL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G   E   E+ V +HI++LR K+
Sbjct: 187 EQVWGYQHEGY-EHTVNTHINRLRIKI 212


>gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601]
 gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601]
          Length = 237

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 100/213 (46%), Gaps = 16/213 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEK 59
            +++DD   + D  I  F  +    + + + + +E LQ     + D+  ++  L G+   
Sbjct: 6   ILVVDDEKPIAD--IVKFNLNKEGFDVYCAYDGDEALQLVEEVQPDLILLDIMLPGRDG- 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR 
Sbjct: 63  -VEVCREVRKKYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRH 121

Query: 120 -KVS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +VS        N+  E G + +  D      +G+   L  RE  +L YL  + G+ + +
Sbjct: 122 SQVSSQAAEDQENSELEVGSLTIHPDAYVVSKRGDTIELTHREFELLHYLAKHIGQVMTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 182 EHLLQTVWG-YDYFGDVRTVDVTVRRLREKIED 213


>gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 238

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFF 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN   +      F       +        E   L  +E  +L++ ++N G+   KTQ
Sbjct: 123 VLGSNISVQEQTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFISNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218


>gi|254427219|ref|ZP_05040926.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196193388|gb|EDX88347.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 229

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
              G DD + KP    E+LAR++A+ RR  VS    ET    GP  V    R   +  + 
Sbjct: 91  LSQGADDYMVKPTKQAELLARISALGRRAGVSEMDEETALSVGPWTVDRSRRQILLDEDA 150

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L  ++  +  YL  N GK +++  +   ++G+    +E   V+ HIS++R+ L
Sbjct: 151 IKLTDKDYELACYLFQNVGKLMSRAHLLEKVWGIM-TPIESRTVDVHISRIRRSL 204


>gi|167035228|ref|YP_001670459.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861716|gb|ABZ00124.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 232

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 84/164 (51%), Gaps = 8/164 (4%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L + R +R+    P++ ++        +   D G DD V KP+  R +LAR+
Sbjct: 57  LMLPGEDGLSICRRVRSQYLGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARI 116

Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            A+ RR +  +++ +    G + + +  R+  +  ++  L   E  +L  L +N G+ + 
Sbjct: 117 QALLRRSETVDSKRQDLAFGALHIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLT 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           + QIF+A+ G+  +  ++  ++  ISK+R     K+G DP+  +
Sbjct: 177 REQIFTALRGVGYDG-QDRSIDIRISKIRP----KIGDDPLQPR 215


>gi|138893961|ref|YP_001124414.1| transcriptional regulatory protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265474|gb|ABO65669.1| Transcriptional regulatory protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 220

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 9/142 (6%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV 142
           ++Q  +   ++G DD + KP    E++AR+ A+ RR  V   + ET     F+  R    
Sbjct: 84  AVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRTFVP-LQEETVTFHGFTLNRTSHT 142

Query: 143 ---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
                E   L  RE ++L+ L+ N+G+ V +  I   ++G +D  V    +++ I  LRK
Sbjct: 143 LHRNNEEISLTPREFQLLDLLVQNQGQVVPRETILDRVWG-WDADVSMKTIDATIKLLRK 201

Query: 200 KLRNKLGFDPVDSKRFLGYSID 221
           KL++    D + + R +GY ID
Sbjct: 202 KLKD----DVIQTVRGVGYKID 219


>gi|57652364|ref|YP_187434.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           COL]
 gi|87160753|ref|YP_495193.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88196579|ref|YP_501407.1| nisin susceptibility-associated DNA-binding response regulator
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151222736|ref|YP_001333558.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510830|ref|YP_001576489.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|258451567|ref|ZP_05699595.1| DNA-binding response regulator [Staphylococcus aureus A5948]
 gi|262049219|ref|ZP_06022095.1| hypothetical protein SAD30_0866 [Staphylococcus aureus D30]
 gi|262051500|ref|ZP_06023722.1| hypothetical protein SA930_0430 [Staphylococcus aureus 930918-3]
 gi|282923007|ref|ZP_06330694.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A9765]
 gi|284025643|ref|ZP_06380041.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|294849735|ref|ZP_06790476.1| two-component system [Staphylococcus aureus A9754]
 gi|57286550|gb|AAW38644.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           COL]
 gi|87126727|gb|ABD21241.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87204137|gb|ABD31947.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150375536|dbj|BAF68796.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160369639|gb|ABX30610.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257860861|gb|EEV83681.1| DNA-binding response regulator [Staphylococcus aureus A5948]
 gi|259160670|gb|EEW45692.1| hypothetical protein SA930_0430 [Staphylococcus aureus 930918-3]
 gi|259162733|gb|EEW47299.1| hypothetical protein SAD30_0866 [Staphylococcus aureus D30]
 gi|282593388|gb|EFB98384.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A9765]
 gi|294823538|gb|EFG39966.1| two-component system [Staphylococcus aureus A9754]
 gi|315197087|gb|EFU27428.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139032|gb|EFW30918.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144434|gb|EFW36198.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329729201|gb|EGG65611.1| putative response regulator protein GraR [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329730115|gb|EGG66505.1| putative response regulator protein GraR [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 221

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I IS        +     G DD + KP +    +A++ A+ RR   L V+N
Sbjct: 66  IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +        +  D      Q +   L   E +IL+ L  N  K V++T +    +   + 
Sbjct: 126 DSLTVKGCTLILDEAKVVYQEQNIQLSLTELQILKLLFQNEDKYVSRTALIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +++N +  ++++LRKKL N +G  D + +K+ +GY +
Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221


>gi|163943423|ref|YP_001642653.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865620|gb|ABY46678.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 235

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 82/168 (48%), Gaps = 13/168 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R++    ++P + ++        +   D G +D + KP     +LAR+  + RR  
Sbjct: 70  LEVARLVNQKKKIPYLLLTSRSEPLDIMQGLDMGAEDYITKPYDLTVLLARIRTVLRR-S 128

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            SN+ +       G I +        V+G+   L ++   +L Y + ++G+ ++K +++ 
Sbjct: 129 CSNDISNGGITRCGNIEINLLTHKVIVEGKHVHLTKQLFELLHYFIIHKGQIISKEELYK 188

Query: 176 AIYGLFD--EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G +D  E  E N +E +I    ++LRN L  D + + R  GY ++
Sbjct: 189 NIWG-YDPSELQETNTLEVNI----RRLRNSLDVDIIKTVRGKGYVLE 231


>gi|295394967|ref|ZP_06805180.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972300|gb|EFG48162.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 243

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D   ++  + G  G +VL   R  R  + VP++ ++            + G DD +NKP 
Sbjct: 53  DACVLDVLMPGADGREVLRTLR--REENWVPVVLLTQVGEAVERAMALEEGADDYINKPF 110

Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI------- 156
              E++ARV A+ RR +       T  I   + G   +  G    L  RE  I       
Sbjct: 111 DPHELVARVRAVLRRTRAGEPPLATASILTSTFGLKIDRVGRRAWLRDRELVITPKGFTL 170

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           LEYLM ++ + + ++++   ++G FD+AV    V+S +++LR+ L
Sbjct: 171 LEYLMVHKDELIERSRLLEVLWG-FDDAVGTRAVDSRVAELRRVL 214


>gi|260598567|ref|YP_003211138.1| DNA-binding transcriptional regulator BaeR [Cronobacter turicensis
           z3032]
 gi|260217744|emb|CBA32154.1| Transcriptional regulatory protein baeR [Cronobacter turicensis
           z3032]
          Length = 240

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 6/153 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSEVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARV 121

Query: 113 AAIYRRLKVSNNRAE---TGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K   +        P+ V  +GR     + +   L   E R+L+ L +  GK  
Sbjct: 122 KTILRRCKPQRDLQTLDAQSPL-VIDEGRFQASWRQKPLDLTPAEFRLLKTLSSEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|260597499|ref|YP_003210070.1| DNA-binding transcriptional regulator PhoP [Cronobacter turicensis
           z3032]
 gi|260216676|emb|CBA30024.1| Virulence transcriptional regulatory protein phoP [Cronobacter
           turicensis z3032]
          Length = 223

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++  +    DV+ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLSELGHQVDAAEDAKEADYYLNEHLPDVAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  RA    +P++ ++     Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRASEITLPILVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVVARMQALLRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P  V    R+  +   +  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISMPPFVVDLSRREVTIHDNLIRLTAFEYTIMETLIRNAGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAEYPGEAITTVRGQGYRFD 221


>gi|258452867|ref|ZP_05700861.1| response regulator protein graR [Staphylococcus aureus A5948]
 gi|257859378|gb|EEV82232.1| response regulator protein graR [Staphylococcus aureus A5948]
          Length = 224

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 7/159 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+     
Sbjct: 64  RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  T    V    +D   +G +   L + E  ILE L+  + + V++  I +A++  
Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DEA V +N +  ++++LRKKL        +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGY 220


>gi|332088374|gb|EGI93492.1| transcriptional regulatory protein baeR [Shigella boydii 5216-82]
          Length = 240

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  + + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|322411718|gb|EFY02626.1| response regulator protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 230

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 103/213 (48%), Gaps = 17/213 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIR 68
           L ++GY      +G   E  N LE       +   D+  ++  + +  G  +++L R   
Sbjct: 21  LSQEGYHVHVASNGQ--EALNYLE-------NTHIDLMVVDIMMPVMDGYSLVKLLR--E 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
           +  Q+P++ ++     ++  + F  GVDD + KPI   E++ R+ A+ RR+K+ + +   
Sbjct: 70  SGQQLPILMMTAKSQFESLEEAFQLGVDDYLVKPIILSELVLRIKALLRRVKLEHEQELQ 129

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                ++  S        G +  LP +E  +L  L++   K   +  +   I+G+ +E  
Sbjct: 130 LANCKLQYQSLTLTDLKTGRIEQLPPKEFYVLYKLLSTPQKIFTRLDLLDDIWGM-EEDY 188

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +E VV++ I ++R+K ++   FD + + R LGY
Sbjct: 189 DERVVDACIKRIRQKCKDYQDFDII-TIRGLGY 220


>gi|307298631|ref|ZP_07578434.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915796|gb|EFN46180.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 215

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           + +P+I ++    ++  +    SG DD + KP    E+LAR+ A+ RR K    R     
Sbjct: 69  TDLPVIMLTAKGEVKDRIRGLKSGADDYLPKPFVIEELLARIEAVLRR-KGKVERISYFE 127

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +    R+  + GE   L + E  +L  L++N G  ++K ++   ++G  D     NVV
Sbjct: 128 ITLDMQSREAFLNGEPLQLSKTEFDLLAVLLSNAGIVMSKERLLEKVWGSEDWG-NPNVV 186

Query: 191 ESHISKLRKKL 201
           E +I+ LRKKL
Sbjct: 187 EVYINYLRKKL 197


>gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 230

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 14/170 (8%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R A    P++ ++    +   +   D+G DD + KP    E+LARV ++ RR 
Sbjct: 60  LEVCRTLRSAGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRA 119

Query: 120 KVSNNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                 A  GP         +++  D RD    G    L R E  +L+ LMAN  + +++
Sbjct: 120 AAD---AVGGPSQGELTFDDLKLNPDTRDVTRGGRHISLTRTEFALLQLLMANARRVLSR 176

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + I   ++G +D     N +E +I  LR+K  ++     + + R +GY +
Sbjct: 177 STILEEVWG-YDFPTSGNALEVYIGYLRRKTESEGEPRLIHTVRGVGYVL 225


>gi|291566616|dbj|BAI88888.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 774

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 16/169 (9%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L R +R+H+ Q+P++ ++   S +  +   D+G DD + KPI   E++AR+ A+ RR 
Sbjct: 60  IALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA 119

Query: 120 KVSNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +S       P+  + D   +P       Q  V PL  +E  ++E  + +  +  +   I
Sbjct: 120 TIS-----LPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
              ++ + +E   +N V +HI  LR KL++  G DP  +++   +GY I
Sbjct: 175 IEHLWSI-EEPAADNTVRAHIKSLRNKLKDA-GGDPKLIENVYGIGYRI 221



 Score = 34.7 bits (78), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           ++L ++IR   +   +P++ ++++   +T  + F +G DD ++KP+   E++AR+ +   
Sbjct: 545 IDLCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLH 604

Query: 118 RLKVSNNRAE 127
           R ++  N AE
Sbjct: 605 RSRLWRNIAE 614


>gi|290352143|dbj|BAI78782.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+L R+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLDRIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|297563468|ref|YP_003682442.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847916|gb|ADH69936.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 221

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 26/219 (11%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           R L   GY  L   DG+  +G         +  S+  D+  ++  L G  GE+VL   R 
Sbjct: 18  RGLETAGYQVLTAADGI--DGLT-------MALSSDVDLVVLDLGLPGIPGEEVL---RR 65

Query: 67  IRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +RA    VP+I ++   ++   +   D+G DD + KP    E+LARV A  R       R
Sbjct: 66  LRARRPSVPVIVLTAKDAVSDRVANLDAGADDYMVKPFSVSELLARVRARLR--GGGQER 123

Query: 126 AE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
            +    G + +    R   V+G    L  RE  +LE L+ +  +  ++ Q+   ++G  F
Sbjct: 124 GDVLAAGGVVLDLGARTASVEGRTVNLSAREFALLEVLIRHPTQVFSRPQLLDRVWGYDF 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D A   NVVE ++S+LR+    KLG + + + R  GY +
Sbjct: 184 DGA--SNVVEVYVSQLRR----KLGSERIQTVRGAGYRL 216


>gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 232

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|294501737|ref|YP_003565437.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|295707087|ref|YP_003600162.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294351674|gb|ADE72003.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294804746|gb|ADF41812.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 241

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 16/170 (9%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVAAI--YR 117
           L R+ +A    P+I ++   +  TTLD     D G +D V KP    E+LARV +   YR
Sbjct: 65  LRRLRKAEVFTPVILLT---ARNTTLDKVMGLDQGANDYVTKPFEIEELLARVRSCIRYR 121

Query: 118 RL-KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            L + S  +     +   SD       R+     E   L  +E  ++ YL+ N+ K V +
Sbjct: 122 SLVEASGTKEAEAELLTISDLTINLETREVLRNNESITLTPKEYDLVVYLLTNKNKIVTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I + ++G ++   E NV++ +I  LRKK+        + + R +GY +
Sbjct: 182 EGILTNVWG-YEYEGETNVIDVYIRHLRKKVDEGFSTSLIHTVRGVGYMM 230


>gi|228917869|ref|ZP_04081406.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841805|gb|EEM86915.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 202

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 39  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 98

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 99  KTEVTVSHEVIEAGEITICPKERKVHVSGKEIQLTYREFNLCQLFVSNPQRVFMRDELLE 158

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 159 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 201


>gi|289428055|ref|ZP_06429759.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295131570|ref|YP_003582233.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|289158938|gb|EFD07138.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291377382|gb|ADE01237.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313763694|gb|EFS35058.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771712|gb|EFS37678.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793758|gb|EFS41789.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803070|gb|EFS44278.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808476|gb|EFS46943.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810535|gb|EFS48249.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313813831|gb|EFS51545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313816988|gb|EFS54702.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818098|gb|EFS55812.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313820957|gb|EFS58671.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823972|gb|EFS61686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827091|gb|EFS64805.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313831577|gb|EFS69291.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313839302|gb|EFS77016.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916553|gb|EFS80384.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918787|gb|EFS82618.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314920994|gb|EFS84825.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926984|gb|EFS90815.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932398|gb|EFS96229.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956707|gb|EFT00959.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959618|gb|EFT03720.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961803|gb|EFT05904.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964787|gb|EFT08887.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968705|gb|EFT12803.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974927|gb|EFT19022.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977978|gb|EFT22072.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314979631|gb|EFT23725.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314984610|gb|EFT28702.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988269|gb|EFT32360.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990356|gb|EFT34447.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079245|gb|EFT51248.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082292|gb|EFT54268.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083737|gb|EFT55713.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087378|gb|EFT59354.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089795|gb|EFT61771.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095569|gb|EFT67545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315100169|gb|EFT72145.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102492|gb|EFT74468.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|327326542|gb|EGE68330.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL096PA3]
 gi|327332809|gb|EGE74541.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL096PA2]
 gi|327447632|gb|EGE94286.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448505|gb|EGE95159.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449638|gb|EGE96292.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455816|gb|EGF02471.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456090|gb|EGF02745.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327457963|gb|EGF04618.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757131|gb|EGF70747.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757326|gb|EGF70942.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757510|gb|EGF71126.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328762085|gb|EGF75590.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL099PA1]
 gi|332676438|gb|AEE73254.1| putative two-component system response regulator [Propionibacterium
           acnes 266]
          Length = 243

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
             +G DD V KP    E++AR+ A+ RR   +  + ++    G + +  D R+    GE 
Sbjct: 108 LTAGGDDYVTKPFSLEEVIARLRALLRRSGATEPKPDSMLTVGDLTLDEDSREVRRAGEE 167

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L   E  +L Y M N  + ++K QI   ++  +D   + NVVE +IS LRKK+    G
Sbjct: 168 IHLTTTEFELLRYFMRNPKRVLSKAQILDRVWN-YDFRGQANVVELYISYLRKKIDR--G 224

Query: 207 FDP-VDSKRFLGY 218
             P + + R  GY
Sbjct: 225 HKPMIHTMRGAGY 237


>gi|206974598|ref|ZP_03235514.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206747241|gb|EDZ58632.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 225

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADM 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|167588550|ref|ZP_02380938.1| DNA-binding response regulator CreB [Burkholderia ubonensis Bu]
          Length = 233

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 27/236 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   + D  +   G DG+       G  +LE        AR D+  ++  L    
Sbjct: 6   ILVVEDELAIADTIVYALGTDGMQTVHCTLGHAALER----LREARFDLVVLDVGL--PD 59

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+ R +R  + VP+I ++        +   + G DD V KP   RE+ ARV  I R
Sbjct: 60  INGFEVCRTLRTFTDVPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILR 119

Query: 118 RLK--VSNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RL    +  RA+ GP          + +DG      G+   L R E  +L  L+ + G+ 
Sbjct: 120 RLNRPAAQPRAQ-GPGTPDVAQGFELDADGARLAWLGQTLNLTRYEFGLLALLVRHPGRI 178

Query: 168 VAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++ Q+   ++    +A++  +  V++HI  LR KLR      DP+ + R +GYS+
Sbjct: 179 YSRDQLMDLVW---RDAIDTTDRTVDTHIKTLRAKLRAIDPARDPIRTHRGMGYSL 231


>gi|27366756|ref|NP_762283.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|320158641|ref|YP_004191019.1| copper-sensing two-component system response regulator CusR [Vibrio
           vulnificus MO6-24/O]
 gi|27358323|gb|AAO07273.1| Transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|319933953|gb|ADV88816.1| copper-sensing two-component system response regulator CusR [Vibrio
           vulnificus MO6-24/O]
          Length = 220

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 86/168 (51%), Gaps = 10/168 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  LP   +  + VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  
Sbjct: 57  GDSISHLPGWKKTKN-VPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQL 115

Query: 117 RRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R  +     S+++ ET  + +    R+   +GE   L R E  +L +L +N G+   + +
Sbjct: 116 RSPESSEQGSSDKVETENLVIDKSTREVFFKGEQITLTRTEFDLLLFLASNLGRVFTRDE 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 176 LLDHVWG-YNHFPTTRTVDTHVLQLRQKLA---GLE-IETLRGVGYKM 218


>gi|24115626|ref|NP_710136.1| DNA-binding response regulator CreB [Shigella flexneri 2a str. 301]
 gi|30065634|ref|NP_839805.1| DNA-binding response regulator CreB [Shigella flexneri 2a str.
           2457T]
 gi|110808186|ref|YP_691706.1| DNA-binding response regulator CreB [Shigella flexneri 5 str. 8401]
 gi|24054966|gb|AAN45843.1| catabolic regulation response regulator [Shigella flexneri 2a str.
           301]
 gi|30043898|gb|AAP19617.1| catabolic regulation response regulator [Shigella flexneri 2a str.
           2457T]
 gi|110617734|gb|ABF06401.1| catabolic regulation response regulator [Shigella flexneri 5 str.
           8401]
 gi|313646243|gb|EFS10705.1| transcriptional regulatory protein creB [Shigella flexneri 2a str.
           2457T]
 gi|332748911|gb|EGJ79335.1| transcriptional regulatory protein creB [Shigella flexneri 4343-70]
 gi|332749686|gb|EGJ80102.1| transcriptional regulatory protein creB [Shigella flexneri 2747-71]
 gi|332768786|gb|EGJ98965.1| response regulator [Shigella flexneri 2930-71]
 gi|333009377|gb|EGK28833.1| transcriptional regulatory protein creB [Shigella flexneri K-218]
          Length = 229

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V+ HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDIHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|294634503|ref|ZP_06713038.1| QseB [Edwardsiella tarda ATCC 23685]
 gi|291092017|gb|EFE24578.1| QseB [Edwardsiella tarda ATCC 23685]
          Length = 220

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 6/132 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP    E+LAR  A+ RR++ + +N  +   IR+           +   +
Sbjct: 91  LDAGADDYLVKPFALAELLARTRALIRRMQGLCDNILQVDNIRLDLSNHQVSCNNQALEV 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  IL  LM   G+ +++  +   +Y   DE +  N +E HI  LR+    KLG + 
Sbjct: 151 TPKEFTILARLMTRAGQTISREVLQQDLYSWQDE-LSSNSLEVHIHNLRR----KLGRER 205

Query: 210 VDSKRFLGYSID 221
           + + R +GY ++
Sbjct: 206 IKTLRGVGYRLE 217


>gi|302537327|ref|ZP_07289669.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302446222|gb|EFL18038.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 234

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 16/165 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR   ++  A
Sbjct: 69  IRKRTSTPVIMVTARGDVRSRIHGLNMGADDYVVKPYDTGELLARIHAVARRTGATDEGA 128

Query: 127 ET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            T          GP+ V    R   V G   PL R+E  +L  L    G    + QI S 
Sbjct: 129 ATPETAPGTVRLGPVAVELPTRRVTVNGTDVPLTRKEFDLLALLAQRPGVVFRREQIISE 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           ++    E      +E H++     LR+KLG    +++ R +GY +
Sbjct: 189 VWRTSWEGTGRT-LEVHVA----SLRSKLGMPALIETVRGVGYRL 228


>gi|229124769|ref|ZP_04253949.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228658746|gb|EEL14406.1| DNA-binding response regulator [Bacillus cereus 95/8201]
          Length = 206

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 43  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 102

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 103 KTEVTVSHEVIEAGEITICPKERKVHVSGKEIQLTYREFNLCQLFVSNPQRVFMRDELLE 162

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 163 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 205


>gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 226

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 7/165 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S+VP+I ++   ++   +   D+G DD + KP    E+LAR+    ++ +
Sbjct: 61  LEVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK-R 119

Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V   + +   IR         R   + G+    L  RE  +L+ LM N+   + +  +  
Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + G ++   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 180 KVCG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223


>gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 226

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 18  QGLTEAGYMVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 67  RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + R +GY +
Sbjct: 185 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|150389691|ref|YP_001319740.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949553|gb|ABR48081.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 3/149 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
             P++ I+    ++     F  G DD + KP   +E+L R+ A+ RR ++ N    T   
Sbjct: 73  NTPILMITAQQEIKDKHRGFLVGTDDYMTKPFDEQEMLFRIKALLRRAQIVNEHKLTIGD 132

Query: 132 RVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
                       GE    LP++E  +L  LM+   K   + Q+   I+G  D   + + +
Sbjct: 133 TTLDYNTLTVTHGEDTITLPQKEFYVLFKLMSYPDKIFTRMQLMDEIWGP-DTETDGHTL 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             H+ +LR+KL+N   F+ V + R LGY 
Sbjct: 192 NVHMGRLREKLKNNPDFEIV-TVRGLGYK 219


>gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 7/116 (6%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI-----RVFSDGRDPEVQGE-VF 147
           G DD + KP   RE++AR+ A+ RR +V +  +E   I      V  D +    + + + 
Sbjct: 95  GADDYITKPFSPREVIARLKAVLRRSQVDHQVSEEADIIKIQDLVIDDNKKVVTKADKIL 154

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            L  RE  +L Y     G+ + +  I +A++G ++   E  +V+ HIS LR+K+  
Sbjct: 155 TLTPREYELLLYFAQRIGRVIDRETILTAVWG-YEYTGESRMVDMHISNLREKIET 209


>gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 239

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 24/222 (10%)

Query: 18  LFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAF-----------LIGKGEKVLELP 64
           L  DD  SL       LE E +  +   +   A++ F           L+  G   +E+ 
Sbjct: 19  LVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDTFHEVNPDLVLLDLMLPGLDGVEIC 78

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SN 123
           R+IR+ S VP+I ++     Q  +   ++G DD V KP   +E+LARV+   RR    + 
Sbjct: 79  RLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNPGAA 138

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G + +   G   +    +  L   E  +L  L  +  K   + ++ S ++G +  
Sbjct: 139 EHVRAGDLDIDVAGHQVKRGESIISLTPLEFELLVTLARSPWKVFTREELLSQVWG-YQH 197

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
             +  +V  H+ +LR K+      DP     V + R +GY +
Sbjct: 198 PADTRLVNVHVQRLRAKIEK----DPERPSIVVTVRGVGYRV 235


>gi|312829152|emb|CBX33994.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
          Length = 224

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 7/159 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+     
Sbjct: 64  RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  T    V    +D   +G +   L + E  ILE L+  + + V++  I +A++  
Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGDDTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DEA V +N +  ++++LRKKL        +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGY 220


>gi|282880384|ref|ZP_06289095.1| response regulator receiver domain protein [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305740|gb|EFA97789.1| response regulator receiver domain protein [Prevotella timonensis
           CRIS 5C-B1]
          Length = 231

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 71/138 (51%), Gaps = 6/138 (4%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A + +P+I ++   +   T+  F+ G DD ++KP   RE+L R+ A+ RR   + N  + 
Sbjct: 75  ATAHIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRIRAVIRRTAETENHEQP 134

Query: 129 GPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             ++     +  D +   V G+  P  + E  +L  L++ +G   ++ ++   I+   D 
Sbjct: 135 KVLKYQGLEMNLDRKTVTVDGKDVPFTKTEFELLHLLLSEKGHVFSRQELIDRIWPK-DV 193

Query: 184 AVEENVVESHISKLRKKL 201
            V +  V+ +I++LRKK+
Sbjct: 194 LVLDRTVDVNITRLRKKI 211


>gi|302558338|ref|ZP_07310680.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus
           Tu4000]
 gi|302475956|gb|EFL39049.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 16/159 (10%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A   VP++ ++         +  D+G DD + KP  +  ++AR+ A+ RR       A  
Sbjct: 69  AGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRR-----RPAGA 123

Query: 129 GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            P+ V  D +       VF       L  +E  +LE+L+   G+ V+K  I   ++    
Sbjct: 124 SPVHVHGDLKVDTAARRVFLGEDEVALTAKEFSVLEHLVLRAGEVVSKADILEHVWDFAY 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  + N+VE +IS LR+KLR +L    + + R  GY ++
Sbjct: 184 EG-DPNIVEVYISALRRKLRARL----IRTVRGAGYRLE 217


>gi|251790511|ref|YP_003005232.1| DNA-binding transcriptional activator KdpE [Dickeya zeae Ech1591]
 gi|247539132|gb|ACT07753.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 229

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 18/160 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I +S     Q  +D  D+G +D + KP    E+LAR     RR  VS +
Sbjct: 69  RDLRQWSTIPVIVLSARTDEQDKIDALDAGAEDYLTKPFGIGELLARSRVALRR--VSAS 126

Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + ET P+  FS+       R      +   L   E R+L  L+AN GK + + Q+ + ++
Sbjct: 127 QQET-PLITFSNVTVDLINRQVLRNQQELHLTPIEFRLLSTLLANPGKVLTQRQLLNQVW 185

Query: 179 GLFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216
           G        N VE SH  ++    LR KL  DP   + FL
Sbjct: 186 G-------PNAVEHSHYLRIYMGHLRQKLEGDPARPRHFL 218


>gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 226

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE+LARV A+ RR   
Sbjct: 62  EVCRQLRTRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVLRRGAE 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +     E G +R+  D     V+GE  PLP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEDLVQTTVEAGGVRMDVDRHVVTVRGERVPLPLKEFELLELLLRNAGRVLTRVQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
           +G  D   +   ++ H+    K+LR K+  DP + +     R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHV----KRLRAKIEPDPANPRHLVTVRGLGYKFE 225


>gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 225

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + I      P+I +S   S++  ++    G DD + KP    E++ARV A+ RR  
Sbjct: 62  IEVLKTIGNDRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALLRRNN 121

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             SNN  + G +    D R     G V  L  +E  +L   M   GK   K +I+  ++ 
Sbjct: 122 HRSNNIIKVGNLSWDKDKRLIYKNGNVLNLRSKEYELLTMFMTTPGKVFTKQEIYENLWQ 181

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +    ++N +  HIS LR+K+  N      + + R LGY +
Sbjct: 182 SY-YFEDDNTIMVHISNLREKIEDNPRSPTKIITIRGLGYML 222


>gi|315650118|ref|ZP_07903194.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eubacterium saburreum DSM 3986]
 gi|315487610|gb|EFU77917.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eubacterium saburreum DSM 3986]
          Length = 230

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 13/149 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR  S +P++  +      + +    +G DD + KP    E+LAR+ ++ RR  + N   
Sbjct: 67  IRKESCIPVLMFTAKNDSFSKVRGLRNGADDYMTKPFVMEELLARIISLIRRYTMFNRNG 126

Query: 124 NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
           N A+T     + +  D R    +   F LP +E  +L +   N+G+ + K QI+  ++G 
Sbjct: 127 NEAKTLNYDGLIIDLDTRSFTTEKGTFELPPKEFDLLLFCAKNQGRIMTKQQIYEKVWGE 186

Query: 180 --LFDEAVEENVVESHISKLRKKLRNKLG 206
             ++D++   N++ S IS+LRKKL    G
Sbjct: 187 PYVYDDS---NIM-SVISRLRKKLETDPG 211


>gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8]
 gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans
           A8]
          Length = 242

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 24/215 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L  +GY      DG   EG   LE   W          A+   L+  G   LE+ +  RA
Sbjct: 24  LRDEGYAVEHAADGN--EGMRRLEEGSW---------DALVLDLMLPGIDGLEICKRARA 72

Query: 70  HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126
            ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR      N R 
Sbjct: 73  MARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSDALERNARI 132

Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + G + +     DP     EV G    L  RE  +L +   +  K  ++  + + ++G  
Sbjct: 133 DAGSLALHGVSLDPVARTAEVDGRRLDLTPREFDLLHFFARHPDKVYSRMDLLNQVWGYQ 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            E   E+ V +HI++LR K+      DP D +R L
Sbjct: 193 HEGY-EHTVNTHINRLRTKIEA----DPSDPQRIL 222


>gi|290352199|dbj|BAI78810.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D   DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRSADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|228961087|ref|ZP_04122714.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798632|gb|EEM45618.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 229

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV+
Sbjct: 64  VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               E          I V    R   V      L   E  IL Y + N+G  + + Q+ S
Sbjct: 124 KQLLENEDDILSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFIKNQGIVLTREQLIS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            I+G ++ A ++  V SHI  LR KL  K  +
Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|172036610|ref|YP_001803111.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171698064|gb|ACB51045.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 231

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 15/217 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           RAL++  YI  +  DG   E  N L     ++         I  +L+ K   +  + +I 
Sbjct: 18  RALIQHNYIVDWAQDG---EEANDL-----IEIGLNLYTIGIFDWLLPKISGIDLIKKIR 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           + +S +P++ ++     +  +   D+G DD + KP    E+LAR+ A+ RR    N +  
Sbjct: 70  QQNSFLPILMLTAKDREEDKVIGLDAGADDYLVKPFGMAELLARLRALQRRFPTINPQKL 129

Query: 128 T-GPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           T G I +         Q E        L  +E ++LEY M +  + + + QI S ++   
Sbjct: 130 TVGKITLDYSNYTIYFQEETGDNKPLSLTNKEFQLLEYFMKHPNQIITRDQILSQLWEWG 189

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +E +  NVV + I  LR+KL      + +++   LGY
Sbjct: 190 NEPM-SNVVAAQIRLLRRKLEPSGMENCIETVYGLGY 225


>gi|196037899|ref|ZP_03105209.1| regulatory protein VanRB [Bacillus cereus NVH0597-99]
 gi|196031169|gb|EDX69766.1| regulatory protein VanRB [Bacillus cereus NVH0597-99]
          Length = 220

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +  +     E   L  +E  IL  L+ N G+ ++   I S ++G +
Sbjct: 123 VAKELHYGKLTILPEDFNVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL + +    + + R +GY ++
Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPDNI----IKTVRGVGYRLE 217


>gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
 gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7]
 gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
 gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7]
          Length = 223

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   ++    VP+I ++     +  L  F  G DD V KP    E++ARV A+ +R  
Sbjct: 62  FELVENLKEFKDVPVIMLTAKGESKDKLRGFSVGADDYVVKPFDPTELMARVRAVLKRYS 121

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V ++N  +   +    D  +   Q E+  LP ++  ++  L  +  +  ++ Q+   I+G
Sbjct: 122 VNTSNIIKLNEVEFDGDKYEIRYQSEIIHLPLKQFELVFELAKHPDQIFSREQLIEKIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D    +  V+ HI ++R+ L +  GF  V + R LGY ++
Sbjct: 182 M-DYDGFDRTVDVHIKRIRENLGHLPGFKVV-TVRGLGYKVE 221


>gi|146283738|ref|YP_001173891.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501]
 gi|145571943|gb|ABP81049.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501]
          Length = 243

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 32/225 (14%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRI 66
           + L++ GY      DG  L+GF+       L      D+  ++  L    G +VLEL   
Sbjct: 37  QGLIECGYTVDCVSDG--LDGFH-------LALQNDYDIVLLDVNLPTMDGWEVLEL--- 84

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           IR   Q  +I ++    L+  +   +SG DD + KP    E+LAR+  + RR        
Sbjct: 85  IRRRKQTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLLRRGEAVALPS 144

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+V++   + G  R +  G+  ++  + F L       L  LM   G+ + +T+I + +
Sbjct: 145 NLRVADLELDPGRHRAYRSGQRIDLTSKEFAL-------LHLLMRRTGEVLTRTEITALV 197

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + FD   + NVV+  I +LR K+    G   + + R +GY ++
Sbjct: 198 WDINFD--CDTNVVDVAIRRLRMKVDEPFGDRLIHTIRGVGYVLE 240


>gi|24115318|ref|NP_709828.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 2a
           str. 301]
 gi|30064682|ref|NP_838853.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 2a
           str. 2457T]
 gi|110807888|ref|YP_691408.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 5
           str. 8401]
 gi|300920895|ref|ZP_07137289.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|24054618|gb|AAN45535.1| transcriptional regulatory protein [Shigella flexneri 2a str. 301]
 gi|30042941|gb|AAP18664.1| transcriptional regulatory protein [Shigella flexneri 2a str.
           2457T]
 gi|110617436|gb|ABF06103.1| Transcriptional Regulatory protein basR/pmrA [Shigella flexneri 5
           str. 8401]
 gi|281603423|gb|ADA76407.1| Transcriptional regulatory protein [Shigella flexneri 2002017]
 gi|300412123|gb|EFJ95433.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|313648696|gb|EFS13136.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri 2a
           str. 2457T]
 gi|332752050|gb|EGJ82443.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           4343-70]
 gi|332752221|gb|EGJ82613.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-671]
 gi|332753248|gb|EGJ83629.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           2747-71]
 gi|332764810|gb|EGJ95039.1| transcriptional regulatory protein BasR [Shigella flexneri 2930-71]
 gi|332999212|gb|EGK18799.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-218]
 gi|333010364|gb|EGK29797.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           VA-6]
 gi|333011063|gb|EGK30477.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-272]
 gi|333012744|gb|EGK32124.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-227]
 gi|333014176|gb|EGK33532.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-304]
          Length = 222

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E  QS      S +   L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEDGHYSLVVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ 
Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IY  +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219


>gi|46190306|ref|ZP_00206421.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
          Length = 248

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 36/218 (16%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGISD 80
           LE E +   +  + + A+E F I K + +L           E+ R IRA S VP+I ++ 
Sbjct: 29  LENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTEVARRIRATSNVPIIMLTA 88

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---------------VSNNR 125
                  +   ++G DD V KP    E+LAR+ A +R  K                + N 
Sbjct: 89  KSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKPAAEDGATGGASGGNANVNH 148

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E GPI +          G+   L   E  +L  L A  G+ ++++ +   ++G ++ + 
Sbjct: 149 LERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEAISRSSLLKNVWG-YENSG 207

Query: 186 EENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +  +V  H+ +LR K+ +    DP     V + R +GY
Sbjct: 208 DTRLVNVHVQRLRAKVED----DPENPQIVQTVRGIGY 241


>gi|329941810|ref|ZP_08291075.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299527|gb|EGG43427.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 217

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 23  GVSLEGFNSLEFEE------WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPL 75
           G++ EG+ S++         W+  +    +  ++  L G  G KV    R  R  +  P+
Sbjct: 10  GLTAEGY-SVDLAHDGRQGLWMARTGEYALVVLDLMLPGLNGYKVCAQLR--REGNATPI 66

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVF 134
           + ++         +  D+G DD + KP  +  ++AR+ A+ RR   V+      G + + 
Sbjct: 67  LVLTAKDGEWDQAEALDTGADDYLAKPFSYLVLVARLRALVRRAATVAPPVLAVGDLSLD 126

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
             GR     G    L  RE  +LE L    G+ V+K  +    +   DEAV+ N+VE+ +
Sbjct: 127 VAGRVCRRAGTRVDLTPREFAVLELLARRAGQAVSKGDLL--YHAWPDEAVDPNLVEARV 184

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S LRKK+        + + R  GY +
Sbjct: 185 SSLRKKVDTAFRRQSLQTVRGTGYRL 210


>gi|313114393|ref|ZP_07799922.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623287|gb|EFQ06713.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 226

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           +F+L DD +L+  G    F   G +L+   +L   E L S  + D+  ++  L  G G  
Sbjct: 4   LFLLEDDLSLIS-GLTFAFKKQGFALDTARTLAEAEVLWSDRKYDLLVLDVSLPDGSG-- 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             +  + +R  S VP++ ++        +   + G DD + KP     +L+RV A+ RR 
Sbjct: 61  -FDFCQKVRRTSNVPILFLTASDEEMNIIMGLELGGDDYLTKPFKLGVLLSRVNALLRRA 119

Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             S+      E+G I V          G +  L   E ++L + M +    ++K QI  A
Sbjct: 120 NASSAGEPVLESGSITVRLLQGQAYKNGILLELTGAEYKLLCFFMQHPNAVLSKEQILDA 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL---GYSIDWN 223
           ++    + ++ + +  +I +LR K+ +    DP   +  L   G    WN
Sbjct: 180 LWDCDGDYIDSSALTVYIRRLRMKIED----DPGKPQMLLTVRGMGYKWN 225


>gi|310830243|ref|YP_003965343.1| two component transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
 gi|308753149|gb|ADO44292.1| two component transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
          Length = 223

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 8/162 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L RI  A + +P+I ++    L   ++    G DD + KP    E+ AR++A+ RR +  
Sbjct: 63  LRRIRAAGASLPVIILTARDDLSERVNLLHIGADDFMMKPFAVAELEARLSALLRR-RAG 121

Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +     G +     G+  E+ G    L  RE  +L  L+   G  ++K QI + + G 
Sbjct: 122 HAQGIFRCGSLTYHQHGQRFELGGAPLHLSPREHALLRLLIQRAGDPLSKAQILARLVG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            D+ +    VE  + +LR+KL    G D  + + R LGY +D
Sbjct: 181 DDKDLNPEAVEGMVYRLRRKLE---GSDTAIQTIRGLGYMLD 219


>gi|295705449|ref|YP_003598524.1| two-component response regulator BceR [Bacillus megaterium DSM 319]
 gi|294803108|gb|ADF40174.1| two-component response regulator BceR [Bacillus megaterium DSM 319]
          Length = 230

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 77/146 (52%), Gaps = 15/146 (10%)

Query: 65  RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           R+IR+HS++P+I +S  D+PS +  ++ F   G DD V KP H   ++A++ A+ RR  V
Sbjct: 65  RMIRSHSKIPIIFLSSRDHPSDMVMSMQF---GADDFVQKPFHFDVLVAKIQALLRR--V 119

Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N   E   +  +       +      +     L + E  IL+YL+  +   V++ ++ +
Sbjct: 120 YNYSVEQVNLLSWQGATIDYEKNKISTESTAIDLTKNEIFILKYLIQKKNTIVSRDELIN 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
           +++      + +N +  ++++LRKKL
Sbjct: 180 SLWE-DKRFISDNTLTVNVNRLRKKL 204


>gi|257866993|ref|ZP_05646646.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC30]
 gi|257873327|ref|ZP_05652980.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC10]
 gi|257801049|gb|EEV29979.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC30]
 gi|257807491|gb|EEV36313.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC10]
          Length = 228

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 3/152 (1%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            ++ K + +  L  + + + + P+I ++    +   +   D+G DD + KP   +E+LAR
Sbjct: 52  IMLPKIDGITLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLAR 111

Query: 112 VAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           + ++ RR  L    ++   G + +  +            L  +E +++E  ++     ++
Sbjct: 112 IRSLSRRKDLDYQEDQLAFGNVVLARNELQLATTTNQVVLSPKEMKLMELFLSRPKVILS 171

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           K  I + I+G FD  VEEN VE ++S LRKKL
Sbjct: 172 KETIINKIWG-FDPDVEENRVEIYVSLLRKKL 202


>gi|218282490|ref|ZP_03488749.1| hypothetical protein EUBIFOR_01331 [Eubacterium biforme DSM 3989]
 gi|218216586|gb|EEC90124.1| hypothetical protein EUBIFOR_01331 [Eubacterium biforme DSM 3989]
          Length = 214

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 82/161 (50%), Gaps = 8/161 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR  S +P++ ++ + + +  +D + +  D  + KP     + AR+ A+ ++  
Sbjct: 60  LDVLKEIRKESDLPVLILTAFSNEEFKIDAYTNLADGYIEKPFSLPVLKARIDALLQKQD 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +   +      + ++     ++ G+   +  +E  IL+YL+ N G  + + QI   ++  
Sbjct: 120 IFAYKNVCVNFKSYT----AKIDGKTIDINAKELEILKYLLDNAGIALTRAQILDHVWKD 175

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + V++ +I +LRK    KLG D + + R +GY ++
Sbjct: 176 SEEVPYDRVIDVYIKELRK----KLGLDCITTIRNVGYKLE 212


>gi|167750198|ref|ZP_02422325.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
 gi|167656760|gb|EDS00890.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
          Length = 235

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 34/242 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            +++DD   + D       +DG ++  F N ++  + ++S    D++ ++  L    G +
Sbjct: 5   ILIVDDEKEIADLIEVYLENDGYTVHKFYNGMDALKCIESQNL-DLAILDVMLPDIDGFR 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +    IR     P+I ++        +     G DD + KP +  E++ARV    RR 
Sbjct: 64  ICQK---IREQYYYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRY 120

Query: 120 KVSNNRAET----GPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
              NN A T     PI         +  +     + G+   L   E  IL YL  NRGK 
Sbjct: 121 VRYNNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKV 180

Query: 168 VAKTQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYS 219
           ++  ++F  I+G    D     N V +HI +LR+KL      +P    +F+      GY+
Sbjct: 181 ISSEELFENIWGEKFLD---NNNTVMAHIGRLREKLN-----EPAKKPKFIKTVWGVGYT 232

Query: 220 ID 221
           I+
Sbjct: 233 IE 234


>gi|149198529|ref|ZP_01875573.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155]
 gi|149138244|gb|EDM26653.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155]
          Length = 226

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 13/207 (6%)

Query: 1   MFVLI-DDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFL--IGK 56
           M VLI +D  L+++G + +F D+G  + E  N  E  + L  + + D   ++  +  I  
Sbjct: 1   MKVLIAEDDILIREGLVDIFEDEGYQIAEAANGREALD-LYHNEKPDFICLDIMMPEING 59

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            +   E+ ++    S +P+I +S     +  L  F+ G DD + KP   +E++ARV A+ 
Sbjct: 60  YDVCREIRKV---DSDIPVIFLSAKSQEEDKLQGFELGADDYITKPFGIKEVIARVRAVT 116

Query: 117 RR-LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR LK ++    T     + +   G     +  V  L  R+ +ILE+L  +  + V++ Q
Sbjct: 117 RRCLKSTSTTQRTFSMADLTINPKGLSCTREEHVIELGLRDIKILEHLYKHANEAVSRQQ 176

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRK 199
           +F + + + +       ++  IS+LRK
Sbjct: 177 LFQSCWEM-EFTGNTRSIDQKISQLRK 202


>gi|110798695|ref|YP_695502.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168211129|ref|ZP_02636754.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|110673342|gb|ABG82329.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170710848|gb|EDT23030.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 226

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 7/165 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S+VP+I ++   ++   +   D+G DD + KP    E+LAR+    ++ +
Sbjct: 61  LEVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK-R 119

Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V   + +   IR         R   + G+    L  RE  +L+ LM N+   + +  +  
Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + G ++   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 180 KVCG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223


>gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 239

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 13/192 (6%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVD 96
           L  +AR D+  ++  L        E+ R +RA    VP++ +S   + +  +     G D
Sbjct: 43  LAVAARPDLMILDVML--PDIDGFEICRRLRADGHPVPVVYLSARNAHRDKIAGLTYGGD 100

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV--FSDGR-DPEVQ-----GEVFP 148
           D V KP    E+LARV A+ RR           P     F+D   DP+       GE   
Sbjct: 101 DYVTKPFAVDELLARVRAVLRRTSPPPAEPAPAPPSPLRFADVELDPDAHLVRRAGEPID 160

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L   E  +L Y + N  + +++TQI  A++  +D   E  +V+ ++S LR+KL  + G  
Sbjct: 161 LSPTEFSLLRYFLTNPNRVLSRTQILDAVWS-YDYGGESTIVDQYVSYLRRKL-GRHGPS 218

Query: 209 PVDSKRFLGYSI 220
            + ++R  GY +
Sbjct: 219 LIHTQRGFGYVL 230


>gi|51874343|gb|AAU12846.1| putative response regulator [Clostridium cellulovorans]
          Length = 223

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 3/116 (2%)

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSN-NRAETGPIRVFSDGRDPEVQGE 145
           L  F+ G +D + KP    E+ AR+ AI + + K+   N  E   I++    +   +  E
Sbjct: 98  LKAFNLGANDYLTKPFFLEELKARIIAILKSMGKIKKENLIEFMDIQIDIKTKTAYIGDE 157

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              +  +  ++LEYL+ N+G  + K QIF  + G   +A  E ++E +IS+LRK+L
Sbjct: 158 KLDINEKSYKLLEYLVINKGVLLFKEQIFDNVCGYGSDASTE-IIEVYISRLRKQL 212


>gi|328463725|gb|EGF35301.1| two-component response regulator [Lactobacillus rhamnosus MTCC
           5462]
          Length = 224

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 3/152 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRA 126
           R    +P++ I+    + +    F+SG+DD + KPI+  E+L R+ A+ RR K++ +N  
Sbjct: 69  RTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRAKITADNLL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + + ++    +V  +   +  RE +IL  L++      ++ ++ +  + L  +   
Sbjct: 129 IVGNLTLNNEAITAQVNHQTVDVTVREFQILYKLLSYPDHAFSRAELINEFWDLASDT-S 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              V+ +I+KLR+K +   GF  + +   LGY
Sbjct: 188 MRAVDVYITKLREKFKAADGF-TIKTIHGLGY 218


>gi|290769859|gb|ADD61631.1| putative protein [uncultured organism]
          Length = 230

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 13/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR    N++A
Sbjct: 67  IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNHQA 126

Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
                 +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+  ++G 
Sbjct: 127 GAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 186

Query: 180 --LFDEAVEENVVESHISKLRKKL 201
              +D++   N++ + IS+LRKKL
Sbjct: 187 EYFYDDS---NIM-AIISRLRKKL 206


>gi|291086647|ref|ZP_06356333.2| QseB [Citrobacter youngae ATCC 29220]
 gi|291067320|gb|EFE05429.1| QseB [Citrobacter youngae ATCC 29220]
          Length = 234

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 15  ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLESGHYSLVVLDLGLPDE-DGLH 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L RI +    VP++ ++   +++  +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 74  FLNRIRQKKYTVPVLILTARDTVKDRVSGLDVGADDYLVKPFALEELHARIRALLRRHNN 133

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L VSN     G  +V+ DG+      E+   P +E  +L  LM   G  V +  +
Sbjct: 134 QGESELIVSNLTLNIGRRQVWMDGQ------EIILTP-KEYALLSRLMLKAGSPVHREIL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ IY  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 187 YNDIYS-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 228


>gi|262164591|ref|ZP_06032329.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|262026971|gb|EEY45638.1| DNA-binding response regulator [Vibrio mimicus VM223]
          Length = 236

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    +   +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 81  LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 137

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 138 SGSAEELISVGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE   +N +E HI  LRKKL + L    + + R +GY I+
Sbjct: 198 G-WDEGSSDNAIEVHIHNLRKKLPDNL----IKNVRGVGYMIE 235


>gi|213582579|ref|ZP_03364405.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 239

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 61  LMLPGIDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 120

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K    +    AE+ P+ +          G+   L   E R+L+ L    GK  
Sbjct: 121 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 179

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 213


>gi|206977756|ref|ZP_03238647.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962018|ref|YP_002340588.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141265|ref|ZP_04269803.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST26]
 gi|206744057|gb|EDZ55473.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065662|gb|ACJ79912.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228642046|gb|EEK98339.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST26]
          Length = 230

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 18/202 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L+K+G+      DG   EG N+     +LQ S   D+  ++  +       LE+ RII
Sbjct: 20  KYLIKEGFQVTIASDGE--EGVNT-----YLQGSF--DLIILDIMM--PKLDGLEVVRII 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRA 126
           R  S VP++ +S   +          G DD + KP    E+ ARV A I R  K S    
Sbjct: 69  REKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKYSATET 128

Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               I++     DP     E  G+   L  +E  IL+  + N+ +   K QI++ I+   
Sbjct: 129 TEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTLIWN-E 187

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           +   ++NV+  H+ +LR+K+ +
Sbjct: 188 EYYGDDNVINVHMRRLREKIES 209


>gi|126658660|ref|ZP_01729806.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
 gi|126620097|gb|EAZ90820.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
          Length = 233

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 16/222 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + LV + YI  +  DGV  E +  L+  EW   S      AI  +L+ K    LEL + +
Sbjct: 18  QVLVSEKYIVDWVVDGV--EAWRYLD-NEWTDYSV-----AIIDWLLPKLSG-LELCQRL 68

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R++   +P++ ++     +  +   D+G DD + KP    E+LAR+ A+ RR      + 
Sbjct: 69  RSYQNPLPVLMLTALGQPENRIAGLDAGADDYLVKPFIMEELLARLRALQRRSPQFQPQT 128

Query: 127 ETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            T       D  +          ++ PL  +E +I  YLM +  + ++ +++ + ++ L 
Sbjct: 129 LTIGKFTLDDANNALCVNITEPSQIIPLTVKEFQIFAYLMKHPDRIISGSKMRNQLWDLD 188

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            E +  NVV + +  +R+KL +     P+++ R  GY  + N
Sbjct: 189 AEPM-SNVVAAQMRLIRRKLASYNCICPIETIRGQGYRFNSN 229


>gi|121585926|ref|ZP_01675719.1| DNA-binding response regulator [Vibrio cholerae 2740-80]
 gi|153215679|ref|ZP_01950075.1| DNA-binding response regulator [Vibrio cholerae 1587]
 gi|153801271|ref|ZP_01955857.1| DNA-binding response regulator [Vibrio cholerae MZO-3]
 gi|121549862|gb|EAX59882.1| DNA-binding response regulator [Vibrio cholerae 2740-80]
 gi|124114662|gb|EAY33482.1| DNA-binding response regulator [Vibrio cholerae 1587]
 gi|124123186|gb|EAY41929.1| DNA-binding response regulator [Vibrio cholerae MZO-3]
 gi|327486060|gb|AEA80466.1| DNA-binding response regulator [Vibrio cholerae LMA3894-4]
          Length = 218

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    +   +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 63  LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 119

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 120 SGSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE   +N +E HI  LRKKL + L    V + R +GY I+
Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 217


>gi|114769046|ref|ZP_01446672.1| DNA-binding response regulator [alpha proteobacterium HTCC2255]
 gi|114549963|gb|EAU52844.1| DNA-binding response regulator [alpha proteobacterium HTCC2255]
          Length = 217

 Score = 55.1 bits (131), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 17/207 (8%)

Query: 22  DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIGISD 80
           DG  ++  + LE       +   D+  ++  L  G G   L+  R ++     P+I ++ 
Sbjct: 19  DGHVIDHTDKLEDAIAFSDTGEYDLILLDIMLPDGDGRSFLKHHRDLK--KDTPIIVLTA 76

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD---- 136
              +   +   D G DD V KP  H E+ AR  A+ RR         T PI  F D    
Sbjct: 77  RSQVSDRISILDLGADDYVTKPFDHAELDARCRAVLRR-----KSGATQPIIKFGDVTFS 131

Query: 137 --GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
                  + G++  L  RE R+ E L+  RG+  +K ++   ++  FDE V +N +E ++
Sbjct: 132 PLAGQLSINGKIVNLRNRELRLFELLLNARGQIFSKQKLVDRLFA-FDEDVSDNAIEVYV 190

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +LRK L +      + + R LGY +D
Sbjct: 191 GRLRKHLESTSL--KISTHRGLGYRLD 215


>gi|317491162|ref|ZP_07949598.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920709|gb|EFV42032.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 229

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 18/164 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R +R  S +P+I +S        +   D+G DD ++KP    E+LARV    RR  
Sbjct: 65  LDFIRDLRQWSSIPVIVLSARAEESDKVLALDAGADDYLSKPFGVAELLARVRVSLRRHA 124

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N  +   P+  FSD       R     GE   L   E R+L  L+AN GK + + Q+ 
Sbjct: 125 QQNQES---PLIQFSDIEVDLINRRVTRAGEDLHLTPIEFRLLTELIANAGKVLTQRQLL 181

Query: 175 SAIYGLFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216
           S+++G        N VE SH  ++    LR KL  +P   K  L
Sbjct: 182 SSVWG-------PNYVEHSHYLRIYMGHLRQKLEAEPARPKHLL 218


>gi|291521248|emb|CBK79541.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 227

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 3/147 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL   R +    ++P+I ++   S    +   D G DD + KP    E+++RV A+ 
Sbjct: 60  GLDVLRKLRSMPETKKLPIILVTAKTSEIDKVKGLDVGADDYITKPFGIMELISRVKALL 119

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR      +       VF D       V  +V  L  +E  +L+ LM+N G   A+  I 
Sbjct: 120 RRSAYVEEKKFLTLGNVFMDDEKHAVYVSDQVCELTYKEYELLKLLMSNAGIVTARDTIM 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             I+G+ D   E   ++ HI  LRKKL
Sbjct: 180 ERIWGI-DFEGESRTLDMHIKTLRKKL 205


>gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 251

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 22/198 (11%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQ 85
           EG   LE   W          A+   L+  G   LE+ R  RA ++  P+I  S   S  
Sbjct: 47  EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMARYTPIIITSARSSEV 97

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIR---VFSD--GR 138
             +   + G DD + KP    E++ARV A+ RR      + R E G +    +F D   R
Sbjct: 98  HRILGLELGADDYLAKPFSVLELVARVKALLRRADAMAKDARMEAGSLNLAGLFIDPLTR 157

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
           +  V G+   L  RE  +L +  +  GK  ++  + +A++G   E   E+ V +HI++LR
Sbjct: 158 EASVNGKRIELTPREFDLLYFFASRPGKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLR 216

Query: 199 KKLRNKLGFDPVDSKRFL 216
            K+ +    DP    R L
Sbjct: 217 AKIED----DPAQPARIL 230


>gi|56540667|gb|AAV92787.1| PmrA [Salmonella enterica]
 gi|56540669|gb|AAV92788.1| PmrA [Salmonella enterica]
          Length = 222

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRR--- 118

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            NN+ E+    G + +        ++G+   L  +E  +L  LM   G  V +  +++ I
Sbjct: 119 HNNQGESELAVGNLTLNMGRHQAWIEGQELTLTPKEYALLSRLMLKAGSPVHREILYNDI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|16761060|ref|NP_456677.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29141243|ref|NP_804585.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213160755|ref|ZP_03346465.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213416998|ref|ZP_03350142.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213648513|ref|ZP_03378566.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289805497|ref|ZP_06536126.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|25300978|pir||AH0771 probable two-component system response regulator STY2344 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503358|emb|CAD02494.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136869|gb|AAO68434.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 240

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGIDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K    +    AE+ P+ +          G+   L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|15926336|ref|NP_373869.1| hypothetical protein SA0614 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282350|ref|NP_645438.1| hypothetical protein MW0621 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485531|ref|YP_042752.1| putative response regulator protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|148267118|ref|YP_001246061.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393166|ref|YP_001315841.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156978987|ref|YP_001441246.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253315301|ref|ZP_04838514.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732900|ref|ZP_04867065.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005451|ref|ZP_05144052.2| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795078|ref|ZP_05644057.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9781]
 gi|258418337|ref|ZP_05682602.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9763]
 gi|258419953|ref|ZP_05682911.1| two-component response regulator [Staphylococcus aureus A9719]
 gi|258430827|ref|ZP_05688539.1| two-component system response regulator [Staphylococcus aureus
           A9299]
 gi|258441680|ref|ZP_05690952.1| two component transcriptional regulator [Staphylococcus aureus
           A8115]
 gi|258445884|ref|ZP_05694061.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|258449689|ref|ZP_05697791.1| two component transcriptional regulator [Staphylococcus aureus
           A6224]
 gi|258454090|ref|ZP_05702062.1| two-component response regulator [Staphylococcus aureus A5937]
 gi|269202279|ref|YP_003281548.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894423|ref|ZP_06302652.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A8117]
 gi|282926521|ref|ZP_06334151.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A10102]
 gi|295407439|ref|ZP_06817235.1| two-component system [Staphylococcus aureus A8819]
 gi|296274723|ref|ZP_06857230.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297208617|ref|ZP_06925046.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297246561|ref|ZP_06930397.1| two-component system [Staphylococcus aureus A8796]
 gi|300912709|ref|ZP_07130152.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|81696362|sp|Q6GBH1|GRAR_STAAS RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|81704638|sp|Q7A1L2|GRAR_STAAW RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|81855981|sp|Q99VW2|GRAR_STAAN RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|205780064|sp|A6TZD6|GRAR_STAA2 RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|205780136|sp|A5IQL2|GRAR_STAA9 RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|205782398|sp|A7WZC3|GRAR_STAA1 RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|13700550|dbj|BAB41847.1| SA0614 [Staphylococcus aureus subsp. aureus N315]
 gi|21203787|dbj|BAB94486.1| MW0621 [Staphylococcus aureus subsp. aureus MW2]
 gi|49243974|emb|CAG42400.1| putative response regulator protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|78771603|dbj|BAE47968.1| Two-component response regulator [Staphylococcus aureus]
 gi|147740187|gb|ABQ48485.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945618|gb|ABR51554.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156721122|dbj|BAF77539.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253729080|gb|EES97809.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789050|gb|EEV27390.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9781]
 gi|257839130|gb|EEV63609.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9763]
 gi|257844036|gb|EEV68427.1| two-component response regulator [Staphylococcus aureus A9719]
 gi|257849499|gb|EEV73469.1| two-component system response regulator [Staphylococcus aureus
           A9299]
 gi|257852149|gb|EEV76076.1| two component transcriptional regulator [Staphylococcus aureus
           A8115]
 gi|257855460|gb|EEV78398.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|257857197|gb|EEV80096.1| two component transcriptional regulator [Staphylococcus aureus
           A6224]
 gi|257863955|gb|EEV86711.1| two-component response regulator [Staphylococcus aureus A5937]
 gi|262074569|gb|ACY10542.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282591414|gb|EFB96486.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A10102]
 gi|282763136|gb|EFC03267.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A8117]
 gi|285816359|gb|ADC36846.1| Two-component response regulator BceR [Staphylococcus aureus
           04-02981]
 gi|294967720|gb|EFG43753.1| two-component system [Staphylococcus aureus A8819]
 gi|296886872|gb|EFH25776.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297176592|gb|EFH35856.1| two-component system [Staphylococcus aureus A8796]
 gi|300886955|gb|EFK82157.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|315128462|gb|EFT84469.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329724984|gb|EGG61482.1| response regulator protein GraR [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329729752|gb|EGG66153.1| response regulator protein GraR [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 224

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 7/159 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+     
Sbjct: 64  RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  T    V    +D   +G +   L + E  ILE L+  + + V++  I +A++  
Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGDDTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DEA V +N +  ++++LRKKL        +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGY 220


>gi|330958232|gb|EGH58492.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 227

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129
            P++ IS    +   +    +G DD + KP    E+ ARV  + RR   +  +    +  
Sbjct: 74  TPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAAKTVLQVA 133

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +    R+    GE   L   E ++LE+LM N G+ + +  IF  ++G  FD     N
Sbjct: 134 DLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHFDPGT--N 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ HI +LRKK+        + + R  GY I
Sbjct: 192 LIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|297163405|gb|ADI13117.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 13/206 (6%)

Query: 23  GVSLEGFNSLEFEE------WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPL 75
           G++ EG+ S++         W+  +    +  ++  L G  G KV    R  R ++  P+
Sbjct: 19  GLTAEGY-SVDLAHDGRQGLWMARTGEYVLIVLDLMLPGLNGYKVCSQLR--RENNATPI 75

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVF 134
           + ++         +  D+G DD + KP  +  ++AR+ A+ RR   V+      G + + 
Sbjct: 76  LVLTAKDGEWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAATVAPPVLAVGDLSLD 135

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
             GR     G    L  RE  +LE L    G+ V+KT +    +   DEA + N+VE+ +
Sbjct: 136 VAGRVCRRAGTRVELTPREFAVLELLARRAGQAVSKTDLL--YHAWPDEAWDPNLVEARV 193

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S LRKK+        + + R  GY +
Sbjct: 194 SALRKKVDAAFHRQSLQTVRGTGYRL 219


>gi|291522104|emb|CBK80397.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 237

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 9/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRRLKVSN 123
           IR  + +P+I +S        +     G DD ++KP + +E++ARV A    Y RL   N
Sbjct: 69  IRETNNIPIIILSAKTEETDKVLGLSMGADDYISKPFNTQEMIARVKAQLRRYMRLGAMN 128

Query: 124 NRAETGPIRV---FSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + +    IR+   + D   ++  V GE   L   E +I+E LM+N G+     +I+  ++
Sbjct: 129 SESMQDSIRIGDLYLDKHAKELNVNGESVHLTATEYKIMELLMSNPGRVFPAEEIYERVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
                +V EN V  HI ++R+K+
Sbjct: 189 QEPAYSV-ENTVMVHIRRIREKI 210


>gi|187478540|ref|YP_786564.1| heavy metal sensing two-component sytem response regulator
           [Bordetella avium 197N]
 gi|115423126|emb|CAJ49657.1| heavy metal sensing two-component sytem,response regulator
           [Bordetella avium 197N]
          Length = 223

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 15/214 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRII 67
            L + GY      DG S +      FE     SA  D+  ++  L G  G +VL   R+I
Sbjct: 19  GLAESGYAVTVARDGRSAQHC----FE-----SALFDLVLLDVMLPGMDGWEVL---RVI 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           R  +  P++ +S   S+Q  +   + G DD + KP  + E+LARV ++ RR  V   +  
Sbjct: 67  RRRASTPVLFLSARDSVQDRVKGLELGGDDYLIKPFSYAELLARVRSLLRRGPVQCQDVL 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +     +    G +  L  +E  +L  L+  +G+ + +T I S ++ L +   +
Sbjct: 127 RLGDLEMVVGRFEVRRAGRLIRLTAKEFVLLRLLLERQGEVLTRTMIASHVW-LMNFDCD 185

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            NVV+  I +LR K+        + + R +GY +
Sbjct: 186 TNVVDVAIRRLRMKIDEPYPDRLIHTVRGMGYRL 219


>gi|115377140|ref|ZP_01464354.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822862|ref|YP_003955220.1| phosphate regulon transcriptional regulatory protein phob
           [Stigmatella aurantiaca DW4/3-1]
 gi|115365849|gb|EAU64870.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395934|gb|ADO73393.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVF 147
           F+ G DD V KP   RE++ R+ AI RR   +   A     GP+ +        V+G+  
Sbjct: 94  FEVGADDYVTKPFSVRELVLRIKAILRRGTPAKEGAAPLTLGPLTLDVATHRFYVEGKEV 153

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E R+LE++M   G+   + Q+   ++GL    +E   +++H+ +LR KL      
Sbjct: 154 LLTALEFRLLEHMMTRLGRVQTREQLLEEVWGL-SSNLETRTIDTHVMRLRDKLGPARAH 212

Query: 208 DPVDSKRFLGYSI 220
             +++ R +GY I
Sbjct: 213 --LETVRGVGYRI 223


>gi|56418841|ref|YP_146159.1| lantibiotic biosynthesis response regulator [Geobacillus
           kaustophilus HTA426]
 gi|56378683|dbj|BAD74591.1| lantibiotic biosynthesis protein (response regulator) [Geobacillus
           kaustophilus HTA426]
          Length = 232

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL  IIR     P++ +S     +  +     G DD + KP   +E+ AR+ +  RR +
Sbjct: 62  MELCTIIRDRVDYPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLRREE 121

Query: 121 V--SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              SN R       +  D    EV  +G+  PL ++E  I++ LM N+    +K +IF  
Sbjct: 122 RIRSNERYLLSSKNITIDLLANEVFCKGKKLPLTKKEYEIVKLLMLNKKVVFSKERIFER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDWN 223
           ++G+  ++  + V ES I  +RKK+++    DP  S  +   G    W+
Sbjct: 182 VWGIDSDSQLDTVTES-IKNIRKKIKD---VDPETSYIQTLYGLGYKWD 226


>gi|119716097|ref|YP_923062.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536758|gb|ABL81375.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 224

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 11/141 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  + VP++ +S        +D  D+G DD V KP    E++AR+ A+ RR    N   
Sbjct: 67  LRGWTAVPILVLSGRSDSTDKVDALDAGADDYVTKPFGMDELMARLRAMLRR----NQAV 122

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  P   F D           V+G+   L   E  +LE L+ + GK +++ Q+   ++G 
Sbjct: 123 DPTPAVAFGDVVVDLTATRVTVRGQEIRLTPTEWHLLEVLVRHPGKLISQRQLLLDVWGP 182

Query: 181 FDEAVEENVVESHISKLRKKL 201
             E  + N +  ++++LR+KL
Sbjct: 183 GYETAQGN-LRLYVAQLRRKL 202


>gi|15925615|ref|NP_373149.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15928211|ref|NP_375744.1| hypothetical protein SA2418 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21284274|ref|NP_647362.1| hypothetical protein MW2545 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487403|ref|YP_044624.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|148269057|ref|YP_001248000.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150395138|ref|YP_001317813.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156980940|ref|YP_001443199.1| hypothetical protein SAHV_2609 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253317223|ref|ZP_04840436.1| hypothetical protein SauraC_14059 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255007396|ref|ZP_05145997.2| hypothetical protein SauraM_13025 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794406|ref|ZP_05643385.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9781]
 gi|258407244|ref|ZP_05680388.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9763]
 gi|258420070|ref|ZP_05683027.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|258428023|ref|ZP_05688082.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|258443097|ref|ZP_05691585.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|258445401|ref|ZP_05693590.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|258448960|ref|ZP_05697068.1| response regulator protein [Staphylococcus aureus A6224]
 gi|258453615|ref|ZP_05701592.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|269204260|ref|YP_003283529.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894881|ref|ZP_06303106.1| response regulator protein [Staphylococcus aureus A8117]
 gi|282927125|ref|ZP_06334750.1| response regulator protein [Staphylococcus aureus A10102]
 gi|295405325|ref|ZP_06815138.1| two-component system [Staphylococcus aureus A8819]
 gi|296275726|ref|ZP_06858233.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297209543|ref|ZP_06925940.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297244383|ref|ZP_06928273.1| two-component system [Staphylococcus aureus A8796]
 gi|300910556|ref|ZP_07128007.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|13702583|dbj|BAB43723.1| SA2418 [Staphylococcus aureus subsp. aureus N315]
 gi|14248400|dbj|BAB58787.1| similar to two-component response regulator [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21205718|dbj|BAB96410.1| MW2545 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245846|emb|CAG44327.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|147742126|gb|ABQ50424.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947590|gb|ABR53526.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156723075|dbj|BAF79492.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788378|gb|EEV26718.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9781]
 gi|257841030|gb|EEV65480.1| two-component system transcriptional regulator [Staphylococcus
           aureus A9763]
 gi|257844029|gb|EEV68421.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|257849853|gb|EEV73815.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|257851703|gb|EEV75638.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|257855661|gb|EEV78587.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|257857647|gb|EEV80540.1| response regulator protein [Staphylococcus aureus A6224]
 gi|257864091|gb|EEV86842.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|262076550|gb|ACY12523.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282591172|gb|EFB96246.1| response regulator protein [Staphylococcus aureus A10102]
 gi|282762818|gb|EFC02953.1| response regulator protein [Staphylococcus aureus A8117]
 gi|285818288|gb|ADC38775.1| Two-component response regulator YvcP [Staphylococcus aureus
           04-02981]
 gi|294970270|gb|EFG46288.1| two-component system [Staphylococcus aureus A8819]
 gi|296885682|gb|EFH24618.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297179161|gb|EFH38406.1| two-component system [Staphylococcus aureus A8796]
 gi|298695890|gb|ADI99112.1| probable two-component sensor response regulator [Staphylococcus
           aureus subsp. aureus ED133]
 gi|300888079|gb|EFK83273.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|312830966|emb|CBX35808.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130713|gb|EFT86698.1| hypothetical protein CGSSa03_11410 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|323440486|gb|EGA98197.1| two-component sensor response regulator [Staphylococcus aureus O11]
 gi|323443574|gb|EGB01189.1| two-component sensor response regulator [Staphylococcus aureus O46]
 gi|329723595|gb|EGG60124.1| putative response regulator protein GraR [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 221

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I IS        +     G DD + KP +    +A++ A+ RR   L V+N
Sbjct: 66  IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +        +  D      Q +   L   E +IL+ L  N  K V++T +    +   + 
Sbjct: 126 DSLTVKGCTLILDEAKVVYQEQNIQLSLTELQILKLLFQNEDKYVSRTALIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +++N +  ++++LRKKL N +G  D + +K+ +GY +
Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221


>gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 228

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 7/117 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQG 144
            + G DD ++KP   RE+LAR+ A+ RRL+     A        GP+RV    R  E+  
Sbjct: 92  LELGADDFMSKPFDLRELLARIKALVRRLEREGAPAPEGTEVILGPLRVRPSSRTAELGV 151

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   L  +E  +L  L+++ G+   +  +   ++G+ D       V+ HI +LRKKL
Sbjct: 152 KALDLTPKEFDVLALLVSHTGRVYTRDDLLEQVWGI-DYVGGTRTVDIHIQRLRKKL 207


>gi|298385740|ref|ZP_06995298.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|298261881|gb|EFI04747.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 228

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 18/168 (10%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR ++ ++P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELTKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR-- 119

Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           VS N  E     V++D R      D E       L  +E  +L Y++ N  + +++ +I 
Sbjct: 120 VSGNVPELPQELVYADLRIDLQRKDVERNNVPIKLSPKEYNLLLYMVENAERVLSRVEIA 179

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKL-RNKLGFDP--VDSKRFLGY 218
             ++   FD     N ++ +I+ LRKK+ RN   F+P  + +K  +G+
Sbjct: 180 EKVWNTHFDTGT--NFIDVYINYLRKKIDRN---FEPKLIHTKAGMGF 222


>gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 231

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 8/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S+VP+I ++        +   + G DD + KP   RE++ARV AI RR   
Sbjct: 64  DVCREVRKFSEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRR-AT 122

Query: 122 SNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + +T  +  F         R+  V      L  +E  +L +L  + GK   + Q+ +
Sbjct: 123 PEEQTDTEDVLTFPGLAINHSSREVHVDDREVTLTPKEFDLLWFLATHPGKVFTREQLLT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++G +D   +   V++HI +LR+K+        V +   +GY  +
Sbjct: 183 AVWG-YDYYGDLRTVDTHIKRLREKVERDGNTPHVKTIWGVGYKFE 227


>gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++      
Sbjct: 75  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGAPG 134

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 135 IPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 194

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 195 YTPERHVDTRVVDVHISRLRAKLED 219


>gi|221066120|ref|ZP_03542225.1| two component transcriptional regulator PhoB, winged helix family
           [Comamonas testosteroni KF-1]
 gi|264679333|ref|YP_003279240.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299532292|ref|ZP_07045685.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|220711143|gb|EED66511.1| two component transcriptional regulator PhoB, winged helix family
           [Comamonas testosteroni KF-1]
 gi|262209846|gb|ACY33944.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298719700|gb|EFI60664.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 231

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 21/199 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L  +G+  ++ +DGVS +     E +  L      DV  ++  L   G   L L R  RA
Sbjct: 24  LRHNGFQPVWAEDGVSAQR----ELDAVL-----PDVILLDWML--PGASGLSLARKWRA 72

Query: 70  HSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NN 124
            S+   VP++ ++        +   D+G DD + KP   +E+LAR+ A+ RR       +
Sbjct: 73  DSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRRAPEQVQD 132

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFD 182
           +   G + + +       QG++  +   E ++L YLM +  +  ++ Q+   ++G  +F 
Sbjct: 133 KVSIGELVLDAAAHRVSWQGDLLKIGPTEFKLLNYLMKHPERVHSRAQLLDKVWGDHVF- 191

Query: 183 EAVEENVVESHISKLRKKL 201
             +EE  V+ H+ +LR+ L
Sbjct: 192 --IEERTVDVHVKRLRESL 208


>gi|37519591|ref|NP_922968.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210582|dbj|BAC87963.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 222

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 98/216 (45%), Gaps = 19/216 (8%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSARE-----DVSAIEAFLIGKGEKVLELPRIIRAH 70
           IA F + G+   G+ ++     ++++        D+  ++  L GK   V+ L  +    
Sbjct: 13  IAAFLEKGLRANGYTTIVVRNGVEAAQMASCDDFDLMILDLGLPGKAGLVV-LEEMRGRG 71

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--- 127
            ++P+I ++    +   +   +SG DD V KP    E+LARV A  R     N R +   
Sbjct: 72  ERLPVIILTARDDIADKVAGLESGADDYVTKPFRFEELLARVRARLR--DTGNGRTQEQL 129

Query: 128 ---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
              +G I +    R     G    L  RE  + E  M + G+ +++  + S ++G +D  
Sbjct: 130 VLRSGEISLDLRTRKVSAGGRTVELSAREFTLAETFMRHPGQVMSREHLLSRVWG-YDYD 188

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              N+V+ ++  LR+KL      D +++ R +GY +
Sbjct: 189 PGSNIVDVYVGYLRRKLNT----DRIETVRGMGYRL 220


>gi|157158943|ref|YP_001465919.1| DNA-binding response regulator CreB [Escherichia coli E24377A]
 gi|157080973|gb|ABV20681.1| transcriptional regulatory protein CreB [Escherichia coli E24377A]
          Length = 229

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQLVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRVKLRAINPDLSPINTHRGMGYSL 226


>gi|325849613|ref|ZP_08170851.1| response regulator receiver domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480094|gb|EGC83171.1| response regulator receiver domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 218

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 7/165 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G KVLE    IR  S++P++ ++ +   +  +  F +  D  + KP     +  RV ++ 
Sbjct: 59  GLKVLEE---IRKTSRIPVLILTAFNDEEYKISAFTNLCDGYMEKPFSLSLLKLRVESLL 115

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +R        E    ++          GE   +  +E  IL++L+ N G  +++ QI   
Sbjct: 116 KRYYGDREIFEYKDAKINFSSYKATYGGENIDMNAKELEILKFLLENEGLALSRMQIIEN 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   DE   + V++ +I +LRK    KLG D + + R +GY ++
Sbjct: 176 VWKESDEIPYDRVIDVYIKQLRK----KLGLDCIKTIRNVGYKLE 216


>gi|308067235|ref|YP_003868840.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305856514|gb|ADM68302.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 224

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 21/163 (12%)

Query: 46  VSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105
           +  ++ F +GK        R+ + + ++P++ +S   S+   L   D   DD V KP H 
Sbjct: 54  LPGLDGFTMGK--------RLKKEYPELPILMLSARTSIDDKLQGLDFA-DDYVTKPFHP 104

Query: 106 REILARVAAIYRRL-KVSNNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEY 159
            E++AR+  + RR   V     + G + VFS       RD    GE   L  ++  I  Y
Sbjct: 105 DELIARIEILLRRSGTVPEESLQLGHLSVFSPDNRIVNRD---TGEEITLTGKQYHIFAY 161

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           L+ + G+ + K Q++ A++G  D  ++ +  +  HI  LR+KL
Sbjct: 162 LLRHLGQIMTKEQMYEAVWG--DPYIDGDKTLMVHIRHLREKL 202


>gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 223

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222


>gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 242

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  +    
Sbjct: 71  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGTTG 130

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G I++ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 226

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 19/162 (11%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A  + P++ ++   ++   +    +G DD + KP   +E+ AR+ A+ RR + S    ET
Sbjct: 71  AGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQESE---ET 127

Query: 129 GPIRVFSDGRDPEV---------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     RD E+          G    L  RE +ILE+ +  + + V++T +   ++ 
Sbjct: 128 PTLKC----RDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVWD 183

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD     NVV+ HISKLRK+L    G   +++ R  GY +
Sbjct: 184 YHFDPNT--NVVDVHISKLRKQLDEAGGPPLIETVRGAGYMV 223


>gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
 gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
          Length = 228

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR  S +P+I ++        ++  D G DD + KP    E+ AR+     R+ +
Sbjct: 62  EVCKIIRKTSNIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARI-----RVAL 116

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQIF 174
            N    T    +  D    +++            L + E  +  YL+ N+   V++ +I 
Sbjct: 117 RNKSNFTNTDYIHYDILKLDLKTNSLYKNEKEISLTKTEYNLFHYLLLNKELVVSREKIL 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
           + ++G +D   EE +V+ +I+ LRKK+
Sbjct: 177 NEVWG-YDYMGEEKIVDVYINALRKKI 202


>gi|157736636|ref|YP_001489319.1| two-component response regulator [Arcobacter butzleri RM4018]
 gi|315635800|ref|ZP_07891062.1| DNA-binding response regulator [Arcobacter butzleri JV22]
 gi|157698490|gb|ABV66650.1| two-component response regulator [Arcobacter butzleri RM4018]
 gi|315479779|gb|EFU70450.1| DNA-binding response regulator [Arcobacter butzleri JV22]
          Length = 226

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 6/160 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL +I++  S +  ++ IS     ++ ++   SG DD + KP     +LAR+ A   RL
Sbjct: 60  IELCKIVKNRSSRTAVVIISARDDKESEIEALKSGADDFIKKPFDFDILLARIEA---RL 116

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    N  E   + +  D    E  GE   L  +   +L +L  +R + V+K Q+  AI+
Sbjct: 117 RFGGTNVIEIDDLVINPDEEKIEYAGEEIELKGKPFEVLTHLARHRDQIVSKEQLLDAIW 176

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               E V  NV+E  I+++R+K+   L    +++ R  GY
Sbjct: 177 E-EPELVTPNVIEVAINQIRQKMDKPLNISTIETIRRRGY 215


>gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 231

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 9/147 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173
              +   E+  +  FSD     V  EV        L R E  +LE L+AN  + + +++I
Sbjct: 122 TPDDGAGESAAM-TFSDLSLDPVTREVTRGDRPISLTRTEFSLLEMLIANPRRVLTRSRI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200
              ++G FD     N +E ++  LR+K
Sbjct: 181 LEEVWG-FDFPTSGNALEVYVGYLRRK 206


>gi|163940332|ref|YP_001645216.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229011818|ref|ZP_04168999.1| Sensor histidine kinase [Bacillus mycoides DSM 2048]
 gi|229170277|ref|ZP_04297956.1| Sensor histidine kinase [Bacillus cereus AH621]
 gi|163862529|gb|ABY43588.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228613200|gb|EEK70346.1| Sensor histidine kinase [Bacillus cereus AH621]
 gi|228749449|gb|EEL99293.1| Sensor histidine kinase [Bacillus mycoides DSM 2048]
          Length = 231

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ     +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQMICTYEVDLMLLDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N    + E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGIIRIRSVEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETVMNGEKLIHTVWGVGYKIE 230


>gi|328958564|ref|YP_004375950.1| KDP operon transcriptional regulatory protein [Carnobacterium sp.
           17-4]
 gi|328674888|gb|AEB30934.1| KDP operon transcriptional regulatory protein [Carnobacterium sp.
           17-4]
          Length = 228

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 12/167 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L +I+R    +P+I +S   +    +   D G DD V KP    E+LAR+    R   
Sbjct: 62  IDLLKIVRKRMTIPIIILSARTNELEKVKALDHGADDYVTKPFGTHELLARIRTSLRH-- 119

Query: 121 VSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            S N+    P     D + D E Q     G+   L + E RIL+ L  N GK V    + 
Sbjct: 120 -STNQVIESPTIKNKDLKIDFEKQLLYKLGKEVHLTKNEYRILKVLFENLGKVVTYNTLM 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +A++G +  A +  ++  ++S +RKK+  N L  + + ++  +GY +
Sbjct: 179 TAVWGPY--AGDSQILRVNMSNIRKKMEYNTLEPEYLTTEIGVGYRM 223


>gi|310827026|ref|YP_003959383.1| hypothetical protein ELI_1434 [Eubacterium limosum KIST612]
 gi|308738760|gb|ADO36420.1| hypothetical protein ELI_1434 [Eubacterium limosum KIST612]
          Length = 229

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 19/164 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  +Q P++ +S     +  ++    G DD + KP    E+LAR+  + RR +     A
Sbjct: 73  LRQSTQAPVLLLSSRRDYEDIVNGLTGGADDYMTKPYRIEELLARIVGLLRRREAMCPPA 132

Query: 127 ET--GPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           E   GP+       R F   RD  +Q        RE  IL +L+ N G+ ++  Q++ A+
Sbjct: 133 EVARGPLVMDTVAQRGFLFDRDMLLQP-------REYAILLFLIQNEGRGISAEQLYEAV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + L   A     V + +S+LR+KL    G+  + S R  GY  +
Sbjct: 186 WKL-PAAGNAGAVRTAVSRLRRKLAGS-GYT-ITSGRGSGYCFE 226


>gi|300816027|ref|ZP_07096250.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300531234|gb|EFK52296.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
          Length = 229

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQLVPDVIILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 249

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 14/149 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R IR  +  P++ +S        +     G DD V+KP    E++ARV A  RR  
Sbjct: 85  LETLRHIRERTDAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAHLRR-- 142

Query: 121 VSNNRAETGPIRVFSDGR-DP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N   ++ P+      + DP     EV G+   L  +E +IL YL+ N G+ V++ QI+
Sbjct: 143 -ENKHRQSAPVTGIGALKLDPSSWTVEVDGKPVELSGKEFQILSYLLINAGQTVSREQIY 201

Query: 175 SAIYGLFDEAV--EENVVESHISKLRKKL 201
           +A++    +A   + + V  HI  LR KL
Sbjct: 202 AAVW---KDAFGGDLSTVTVHIKNLRDKL 227


>gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
 gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
          Length = 233

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 13/121 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------TGPIRVFSDGRDPEVQGE 145
           G DD V KP    E++ARV ++YRR+ ++  R E        +G   +    R  + +G 
Sbjct: 97  GADDYVTKPFSPSELVARVDSLYRRVAIAEMREENNFQEELVSGDFVLNLRNRALKKKGR 156

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV--EENVVESHISKLRKKLRN 203
           +  L + E +I+EY  +N G  + +T I + ++G   EA   EE +V+ +I +LR K+ +
Sbjct: 157 MIELTQVEFQIMEYFFSNPGVALDRTNILTHVWG---EAYYGEEKIVDVNIRRLRMKIED 213

Query: 204 K 204
           +
Sbjct: 214 E 214


>gi|126700939|ref|YP_001089836.1| two-component response regulator [Clostridium difficile 630]
 gi|254976918|ref|ZP_05273390.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094303|ref|ZP_05323781.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102486|ref|ZP_05331463.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308391|ref|ZP_05352562.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255316058|ref|ZP_05357641.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518715|ref|ZP_05386391.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651836|ref|ZP_05398738.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684864|ref|YP_003216149.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688522|ref|YP_003219656.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521624|ref|ZP_07407971.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115252376|emb|CAJ70217.1| Two-component response regulator [Clostridium difficile]
 gi|260211027|emb|CBA66352.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214539|emb|CBE07065.1| two-component response regulator [Clostridium difficile R20291]
          Length = 219

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 2/143 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            E+ + IR     P++ ++        +     G DD + KP    E+ AR+ A  RR  
Sbjct: 60  FEVCKTIRNKVDCPILFLTAKNMESDIMYGLGIGADDYITKPFGVGELRARITAHLRRES 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N      ++    G++  + G+     + E  I E+L  N+G+  +K +I+ ++YG
Sbjct: 120 REKKNLLTISNVQFNFLGKEVSIDGKKINFTKSEYLICEFLAKNKGQVFSKERIYESVYG 179

Query: 180 LFDEAVEENVVESHISKLRKKLR 202
            FD   + + +  HI  +R KL+
Sbjct: 180 -FDGESDISTITEHIKNIRSKLK 201


>gi|320546932|ref|ZP_08041234.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320448450|gb|EFW89191.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 226

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 73/144 (50%), Gaps = 5/144 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +  I ++ +Q  +I ++    +   +   D+G DD + KP   +E+LAR+ ++ RR+   
Sbjct: 63  VQEISQSGNQAHIIMLTAMSEIDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRRVDTA 122

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  + G     + G           L  +E ++LE+ M N GK+++  QIF+ ++  
Sbjct: 123 FTSNILKLGS-ATLNVGEQELASQNTIQLAGKEAKMLEFFMLNPGKKLSTDQIFNHVWAT 181

Query: 181 --FDEAVEENVVESHISKLRKKLR 202
              D  ++   V  ++S LR+KL+
Sbjct: 182 DKDDPDIDNGYVFIYVSYLRQKLQ 205


>gi|319786103|ref|YP_004145578.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464615|gb|ADV26347.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 227

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 16/210 (7%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR--AHS 71
           G+   F  DGV+            L  +   D  AI   L   G   +E+ R +R  A  
Sbjct: 24  GHTVDFAADGVT-----------GLHLAVVHDFDAIVLDLNLPGMDGIEVCRKLRNEARK 72

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
           Q P++ ++   SL+  L  FDSG DD + KP   +E+  R+ A+ RR K    R   TG 
Sbjct: 73  QTPVLMLTARDSLENKLAGFDSGADDYLIKPFALQEVEVRLNALARRGKGVQTRVLNTGD 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +    D  +   +G +  L     +IL+ LM      V + ++ + ++G  +E  + + +
Sbjct: 133 LEYNLDTLEVRREGRLLQLNPTALKILQALMEASPAVVTRQELETRVWG--EELPDSDSL 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             HI  LR  +        + ++  +GY I
Sbjct: 191 RVHIHGLRAVVDKPFATPYIQTRHGIGYRI 220


>gi|317495907|ref|ZP_07954270.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914084|gb|EFV35567.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 223

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 3/159 (1%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL + +R   +  P+I ++   SL   +   DSG DD + KP    E+LAR+  + RR  
Sbjct: 61  ELIKQLRVKGNSTPVIMLTAKDSLDDKILGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  +   + +    +      E   L  +E  +LEYL  N+   +++ QI + ++ 
Sbjct: 121 GFATNIIQVDDVVLDISKKQVTRSSESIVLTGKEYEVLEYLFKNKTGIISREQILNHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              E V  N+++  +  +RKKL        + +KR LGY
Sbjct: 181 YDYEGV-SNIIDVIVKNIRKKLDVGSKKPIIHTKRGLGY 218


>gi|303250662|ref|ZP_07336859.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307246173|ref|ZP_07528255.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307252889|ref|ZP_07534778.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307255154|ref|ZP_07536972.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257309|ref|ZP_07539079.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|307259591|ref|ZP_07541316.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|302650650|gb|EFL80809.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306853108|gb|EFM85331.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306859678|gb|EFM91702.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306862027|gb|EFM94003.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306864159|gb|EFM96072.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306866527|gb|EFM98390.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 213

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +Q+P++ ++   S    +   ++G DD V KP   + ++AR+ ++ RR   +N+      
Sbjct: 58  AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDD 117

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +  + +    Q +   L   E ++L + M +  K  ++ Q+   ++G  D  VE+  V
Sbjct: 118 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 176

Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +S+I +LRK L    GF+  V + R  GY
Sbjct: 177 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 204


>gi|229105451|ref|ZP_04236094.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228678007|gb|EEL32241.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 229

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    K S  
Sbjct: 66  RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125

Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEVDVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +G ++ A ++  V SHI  LR KL  K  +
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus ATCC 19977]
 gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus]
          Length = 247

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 11/173 (6%)

Query: 38  LQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGV 95
           L  + R D   ++  + G  G  VL   R +RA     P + ++    LQ  +     G 
Sbjct: 59  LARTVRPDAVILDVMMPGMDGFGVL---RRLRADGIDAPTLFLTARDGLQDKIAGLTLGA 115

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSN-----NRAETGPIRVFSDGRDPEVQGEVFPLP 150
           DD V KP    E++AR+  I RR  + +     +R     I +  D  +    GE   L 
Sbjct: 116 DDYVTKPFSLEEVVARLRVILRRSGMGSEPARKSRLSFADIELDEDTHEVWKAGEPVALS 175

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             E  +L Y M N G  ++K +I   ++  +D   + NVVES++S LR+K+ N
Sbjct: 176 PTEFTLLRYFMINAGTVLSKPKILDHVW-RYDFGGDVNVVESYVSYLRRKIDN 227


>gi|161503820|ref|YP_001570932.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865167|gb|ABX21790.1| hypothetical protein SARI_01907 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 226

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + RE  S I   ++  G    ++ R +
Sbjct: 18  QGLTEAGYVVDYACDG-----------RDGLHLALREHYSLIILDIMLPGLDGWQVLRAL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 67  RTAHQTPVIYLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVSVFTRLS 126

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +      +   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 127 INGLDMDATRQSVSRNKKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + R +GY +
Sbjct: 185 TNTVDVAIRRLRAKVDDPFEKKLITTVRGMGYRL 218


>gi|114567685|ref|YP_754839.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338620|gb|ABI69468.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 223

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 4/164 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R +    P++ ++    L+  +   DSG DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LEILRQLRLNGISSPVMLLTAKGELEDKVSGLDSGADDYLVKPFAAEELLARIRALSRRK 119

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + ++  +     +     + E +     L R+E  I+ Y +    + ++K ++   +
Sbjct: 120 GEMIVDDTLDIADFTLNLSTYELEGKNSSVRLTRKEFDIMRYFVYRPNRVLSKDELIEKV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G FD   + N +E +IS LRKKL +      + + R +GY ++
Sbjct: 180 WG-FDSEADYNNIEVYISFLRKKLAHIGSQAAISTLRGIGYKLE 222


>gi|42519461|ref|NP_965391.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|41583749|gb|AAS09357.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|329667017|gb|AEB92965.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 221

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            DSG DD + KP   +E+LAR+ +  RR  + + N  E G +   +      V      L
Sbjct: 91  LDSGADDYLTKPFSLKELLARLRSKERRDDQYTPNEVEVGDL-ALNVAEQELVSHNSIRL 149

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +E ++L YLM N GK  + + + + ++   DE   E+VV  +IS LR+KL++
Sbjct: 150 GSKETQLLNYLMLNEGKEFSTSDLLAHVWK-DDEEASEDVVWIYISYLRQKLQS 202


>gi|150391654|ref|YP_001321703.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149951516|gb|ABR50044.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 227

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 21/221 (9%)

Query: 16  IALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAI-EAFLIGKGEKVL---ELP------ 64
           I +  DD + LE        +W  + S   D S I EAF+      V+   +LP      
Sbjct: 5   IFIIEDDSLLLEALKE-GLSQWSYEVSNPSDFSHIMEAFVEHHPHLVIIDIQLPKFDGFH 63

Query: 65  --RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
             R IRA S+VP+I +S        +   + G DD V KP +   +LA+V AI RR    
Sbjct: 64  WCRAIRAVSKVPIIFLSSRDHPMDMVMAMNLGADDYVQKPFNMDVLLAKVQAILRRTYTY 123

Query: 120 -KVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +VS++  E     +    GR  +  G+   L + E  IL  L+ +  K +++ ++   +
Sbjct: 124 EEVSSDVIEWNQALIDLKSGRIYK-DGKTIDLTKNEFFILSVLVKSNNKIISRHELMKML 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   D+ + +N + ++I++LR++L +    + + +K+ LGY
Sbjct: 183 WD-DDQYINDNTLTANITRLRQQLSSLNLAEGIVTKKGLGY 222


>gi|332358234|gb|EGJ36062.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 234

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N  + G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E R++E+LM N  K ++  +IF  ++    DE ++E  V  +IS LR+KL+
Sbjct: 151 AGKESRMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204


>gi|329924862|ref|ZP_08279811.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp.
           HGF5]
 gi|328940359|gb|EGG36686.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp.
           HGF5]
          Length = 224

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E  LE+   IR     P++ ++        +  F +G DD + KP   RE+ ARV A  R
Sbjct: 57  ENGLEICERIRGFVSCPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHLR 116

Query: 118 RLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R +    +A       + +    R+   Q    PL ++E  I+E L  N G    K +++
Sbjct: 117 REQRILTKASVRFNHDLVINYTARELYFQDIRIPLAKKEFDIIELLSMNPGMVFEKERMY 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I+GL DE  + +V+  HI ++R K +     D +++   +GY
Sbjct: 177 EKIWGL-DEEGDSSVIAEHIRRIRNKFKEYGSTDRIETVWGVGY 219


>gi|213024545|ref|ZP_03338992.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 210

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K
Sbjct: 40  LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 99

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +    AE+ P+ +          G+   L   E R+L+ L    GK  ++ Q+ + 
Sbjct: 100 PQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNH 158

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           +Y  +   V +  ++SHI  LR+KL +
Sbjct: 159 LYDDY-RVVTDRTIDSHIKNLRRKLES 184


>gi|163790188|ref|ZP_02184621.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159874463|gb|EDP68534.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 230

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 16/161 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R IR  S VP+I ++   S+   +   D G DD + KP    E+LAR+ A++RR++
Sbjct: 63  IDVCRRIRQVSNVPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALFRRIE 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG---------EVFPLPRRERRILEYLMANRGKRVAKT 171
           + + +  T    V    RD  V+          EV  L +RE  +L  LM N    +A+ 
Sbjct: 123 IESEQNITKQTTVTY--RDLTVEKENRVVRRGEEVIELTKREYELLLELMENVNVVLARD 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
            + + ++G ++  VE NVV+ +I    + LRNK+    VDS
Sbjct: 181 VLLNKVWG-YETEVETNVVDVYI----RYLRNKIDVPNVDS 216


>gi|153812114|ref|ZP_01964782.1| hypothetical protein RUMOBE_02510 [Ruminococcus obeum ATCC 29174]
 gi|149831769|gb|EDM86855.1| hypothetical protein RUMOBE_02510 [Ruminococcus obeum ATCC 29174]
          Length = 219

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD + KP    E+ ARV A  RR +   + A T   I++    ++  V      L + 
Sbjct: 93  GADDYLTKPFRIAELRARVNAHLRRERRERHTALTFDRIKIDLSEKELRVDNTPVALTKS 152

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  I EYL  N+G+  +K QI+ A++ L  ++ + + + +HI  +R KL NKL   P+ +
Sbjct: 153 EYLICEYLARNKGQVFSKEQIYEAVFSLEGDS-DNSTISTHIKNIRSKL-NKLDIQPIAT 210

Query: 213 KRFLGY 218
              +GY
Sbjct: 211 VWGIGY 216


>gi|153956233|ref|YP_001396998.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856556|ref|YP_002473678.1| hypothetical protein CKR_3213 [Clostridium kluyveri NBRC 12016]
 gi|146349091|gb|EDK35627.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219570280|dbj|BAH08264.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 230

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ ++IR  S  P+I I+        +   +SG DD + KP    E++AR+ A++RR+ 
Sbjct: 62  MEVCKLIRLKSNTPIIMITARSEDSDKIWGLNSGADDYIVKPFSPGEVVARIKAVFRRIT 121

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              N   +      + +  D    ++ G    L ++E  +L  L     K V++  +   
Sbjct: 122 AHKNNEPSIIKYQHLELDIDNYSVKLDGVSVNLTKKEIEVLWVLSTYPNKIVSRDTLLDE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202
           I+G+ D   +   V++HI ++R KL+
Sbjct: 182 IWGI-DYFGDPRTVDTHIKRIRAKLQ 206


>gi|126665087|ref|ZP_01736070.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
 gi|126630457|gb|EBA01072.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
          Length = 243

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 18/176 (10%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L + R +R     P++ ++        +   + G DD + KP+  R +LAR+
Sbjct: 59  LMLPGEDGLSICRRVRPRYSGPILMLTARTDDMDQILGLEMGADDYIGKPVQPRVLLARI 118

Query: 113 AAIYRRLK------VSNNRAETGPIRV-FSD------GRDPEVQGEVFPLPRRERRILEY 159
            A+ RR+       V ++    GP+RV F++       R+  + G    L   E  +L  
Sbjct: 119 RALMRRVAEKNQPLVGSDPVSEGPVRVKFNELVIDRSMREAWLSGVTVDLTSAEFDLLWL 178

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           L +N G+ +++ +IF+A+ G+  +  ++  ++  +S++R     K+G DP+  +R 
Sbjct: 179 LASNAGRVLSREEIFTALRGIEYDG-QDRSIDVRVSRIRP----KIGDDPIHPRRI 229


>gi|73543119|ref|YP_297639.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120532|gb|AAZ62795.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 225

 Score = 55.1 bits (131), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 16/197 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           RAL + G++     DG+  E    L  EE+       DV  ++  L GK G  VL   + 
Sbjct: 18  RALEQGGFVIEHVGDGLQAEA--RLVAEEY-------DVVVLDLRLPGKDGLAVL---KA 65

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNN 124
           +RA   + P++ ++   +L   +   + G DD + KP    E+ AR+ A+ RR +  ++ 
Sbjct: 66  MRARDDRTPVLILTAQDTLDERVRGLNLGADDYLPKPFAIAELEARILALIRRSRGRAHP 125

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           R + G +    + R   + G+   L  RE  +L  L+A  G+ + K Q+   ++ L D  
Sbjct: 126 RLQCGTLVFDGESRGFTLDGQPLALTPRESTLLGALLARSGQPLTKAQLLDKVFSL-DAD 184

Query: 185 VEENVVESHISKLRKKL 201
           V  + +E  + +LRKKL
Sbjct: 185 VSPDAIEVLVYRLRKKL 201


>gi|332532103|ref|ZP_08407986.1| transcriptional regulatory protein in two-component regulatory
           system with BaeS [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038444|gb|EGI74888.1| transcriptional regulatory protein in two-component regulatory
           system with BaeS [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 226

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 4/146 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+  +EL + IR  S VP+I +S        L   + G DD + KP  + E++ARV AI 
Sbjct: 60  GQSGIELCKAIRRFSNVPIIMVSAKVEEIDRLLGLELGADDYICKPFSYAELVARVKAIL 119

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RRL  +++  E+  +++       + +     L   E ++ + L  N  +  ++  +   
Sbjct: 120 RRLNNASDVTEST-MKLDESSYSVKYKSNSIELTNFEFQLFKPLFNNPNRIYSRDSLMDT 178

Query: 177 IYGLFDE-AVEENVVESHISKLRKKL 201
           +Y   D+  V    ++SHI KLRKKL
Sbjct: 179 MYA--DQRIVSHRTIDSHIKKLRKKL 202


>gi|303252114|ref|ZP_07338283.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248279|ref|ZP_07530305.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302649096|gb|EFL79283.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306855213|gb|EFM87390.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 213

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +Q+P++ ++   S    +   ++G DD V KP   + ++AR+ ++ RR   +N+      
Sbjct: 58  AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDD 117

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +  + +    Q +   L   E ++L + M +  K  ++ Q+   ++G  D  VE+  V
Sbjct: 118 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 176

Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +S+I +LRK L    GF+  V + R  GY
Sbjct: 177 DSYIRRLRKSLE-PCGFERYVQTVRGSGY 204


>gi|295106296|emb|CBL03839.1| two component transcriptional regulator, winged helix family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 230

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 14/154 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNR 125
           ++P++ +S    +      F +G DD V KP    E+L R+ A  RR K       + NR
Sbjct: 69  RIPIVFLSAKGDIVDKSIGFKAGGDDYVVKPFSPDELLLRIEAHLRRHKDDLAFAKAVNR 128

Query: 126 ---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              + TG + VF +  +  + G    L  +E  IL  L AN G+   + QIF+ I+G   
Sbjct: 129 EGSSTTGDLEVFFNQYEARLHGRKVDLTAKEFEILALLAANPGQVFTRQQIFAHIWG--- 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
              +  V ES I+   +K+R K+  +P   K  L
Sbjct: 186 --EDSEVDESSITVFMRKIREKIEENPSQPKYLL 217


>gi|258622113|ref|ZP_05717139.1| DNA-binding response regulator [Vibrio mimicus VM573]
 gi|258624051|ref|ZP_05719003.1| DNA-binding response regulator [Vibrio mimicus VM603]
 gi|258583661|gb|EEW08458.1| DNA-binding response regulator [Vibrio mimicus VM603]
 gi|258585437|gb|EEW10160.1| DNA-binding response regulator [Vibrio mimicus VM573]
          Length = 236

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    +   +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 81  LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 137

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 138 SGSAEELISVGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE   +N +E HI  LRKKL + L    + + R +GY I+
Sbjct: 198 G-WDEGSSDNAIEVHIHNLRKKLPDNL----IKNVRGVGYMIE 235


>gi|237798943|ref|ZP_04587404.1| DNA-binding response regulator [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021797|gb|EGI01854.1| DNA-binding response regulator [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 151

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 11/128 (8%)

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGE 145
           D+G DD V KP+H R +LAR+ A+ RR +          R   GP+ V +  R+  ++ +
Sbjct: 2   DTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQ 61

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L   E  +L  L+AN G+ +++ +IF+A+ G+  +  ++  ++  IS++R     K+
Sbjct: 62  SIELTGAEFDLLWLLVANAGRTLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KI 116

Query: 206 GFDPVDSK 213
           G DP+  +
Sbjct: 117 GDDPIHPR 124


>gi|228963749|ref|ZP_04124890.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795894|gb|EEM43361.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 242

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 8/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNE 138

Query: 122 SNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  G   V+ + +    V  E   L   E  +L   + +    +++ Q+   I+GL
Sbjct: 139 HKQIQYHGI--VWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL 196

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
            +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 197 -NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 237


>gi|254387470|ref|ZP_05002709.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294815144|ref|ZP_06773787.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443505|ref|ZP_08218239.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701196|gb|EDY47008.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294327743|gb|EFG09386.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 221

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 27/220 (12%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           R L  +GY      DG  LEG +       + S    D+  ++  L G  G +V    R 
Sbjct: 18  RGLTAEGYAVDVVHDG--LEGLH-------MASEGVHDLVILDIMLPGMNGYRVCAALRA 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
             A   +P++ ++         +  D+G DD + KP  +  ++ARV A+ RR      RA
Sbjct: 69  --AGHDMPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR----RGRA 122

Query: 127 ETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              P+    D R       VF       L  +E  +LE L    G  V+K QI   ++  
Sbjct: 123 GGSPVLAVGDLRVDTAARRVFVGETETTLTAKEFAVLEQLAVRAGDVVSKAQILEHVWD- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F    + N++E +IS LR+    KLG   + + R  GY +
Sbjct: 182 FAYDGDPNIIEVYISSLRR----KLGAPRIQTVRGAGYRL 217


>gi|307326237|ref|ZP_07605434.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306888180|gb|EFN19169.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 226

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 13/206 (6%)

Query: 23  GVSLEGFNSLEFEE------WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPL 75
           G++ EG+ S++         W+  +    +  ++  L G  G KV    R  R  +  P+
Sbjct: 19  GLTAEGY-SVDLAHDGRHGLWMARTGEYALVVLDLMLPGLNGYKVCAQLR--REGNATPI 75

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVF 134
           + ++         +  D+G DD + KP  +  ++AR+ A+ RR   V+      G + + 
Sbjct: 76  LVLTAKDGDWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAATVAPPVLAVGDLSLD 135

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
             GR     G    L  RE  +LE L    G+ V+KT +    +   DEA + N+VE+ +
Sbjct: 136 VAGRVCRRAGARVELTPREFAVLELLARRAGQAVSKTDLL--YHAWPDEAQDPNLVEARV 193

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S LRKK+        + + R  GY +
Sbjct: 194 SALRKKVDTAFHRQSLQTVRGTGYRL 219


>gi|260431422|ref|ZP_05785393.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415250|gb|EEX08509.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 225

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++ +  ++ P+I  +   +L   L   +SG DD V KP    E+LAR+ A+ RR   +
Sbjct: 63  LHQLKQIRNETPIIICTARDALDERLRGLNSGSDDYVVKPFAFAELLARIRAVLRRPGNA 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 +G +R  +  R   + G       RE  +LE  +   G+  +K  I +A+YG F
Sbjct: 123 LGMVLGSGNVRFDTVDRSVTIGGRPARFSARELALLELFLTRAGRVQSKAAIENALYG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D     N +E    +LRKKL        + + R +GY ++
Sbjct: 182 DAPPTPNAIEVLTHRLRKKLTEYEADVTIHNLRGVGYLLE 221


>gi|196250488|ref|ZP_03149179.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|196209978|gb|EDY04746.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 220

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 9/142 (6%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV 142
           ++Q  +   ++G DD + KP    E++AR+ A+ RR  V   + ET     F+  R    
Sbjct: 84  AVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRTFVP-LQEETVTFHGFTLNRTSHT 142

Query: 143 ---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
                E   L  RE ++L+ L+ N+G+ V +  I   ++G +D  V    +++ I  LRK
Sbjct: 143 LHRNNEEISLTPREFQLLDLLVQNQGQVVPRETILDRVWG-WDADVSMKTIDATIKLLRK 201

Query: 200 KLRNKLGFDPVDSKRFLGYSID 221
           KL++    D + + R +GY ID
Sbjct: 202 KLKD----DVIQTVRGVGYKID 219


>gi|188588892|ref|YP_001920540.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|251779766|ref|ZP_04822686.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|188499173|gb|ACD52309.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|243084081|gb|EES49971.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 234

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           G DD + KP   RE+LARV A+ RR    + +  N  E+  +++  D  +  +  +   L
Sbjct: 99  GADDYITKPFSVRELLARVKAVLRRTYPGVDIEENSYESQGLKIDFDRHEVFINNQKIEL 158

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             +E  +L+ L+ N+GK + +  +   I+G ++   E   V+ HI  LRKK+
Sbjct: 159 TLKEFDLLKILIKNKGKILQRETLLDKIWG-YEYIGETRTVDVHIRYLRKKI 209


>gi|167769639|ref|ZP_02441692.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
 gi|167668000|gb|EDS12130.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 13/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR    N++A
Sbjct: 67  IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNHQA 126

Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
                 +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+  ++G 
Sbjct: 127 GAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 186

Query: 180 --LFDEAVEENVVESHISKLRKKL 201
              +D++   N++ + IS+LRKKL
Sbjct: 187 EYFYDDS---NIM-AIISRLRKKL 206


>gi|149918888|ref|ZP_01907374.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
 gi|149820262|gb|EDM79679.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
          Length = 239

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 14/153 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R +R  S+VP+I +S        +   + G DD + KP   RE+LAR+ A+ RR  
Sbjct: 63  LELCRKLRQRSKVPVIILSARGDEVDRIVGLEVGADDYMPKPFSPRELLARIRAVLRRHS 122

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFS 175
            +    E    TGP+ +    R   + G    L   +  +L +L+A + +RV ++ Q+ +
Sbjct: 123 AAQGDDEDSVTTGPLEIDRARRTATIAGASCELTAYQFDLL-WLLATQAERVLSRNQLHA 181

Query: 176 AIYGL-------FDEAVEENVVESHISKLRKKL 201
            +  L       FD  V+ + ++ H+SK+R+ L
Sbjct: 182 QVRALRGEPAMDFDPTVDRS-IDVHLSKIRQAL 213


>gi|221065616|ref|ZP_03541721.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220710639|gb|EED66007.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 231

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 3/161 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R     P+I ++    LQ  +   D+G DD + KP    E+ AR+ A+ RR   S
Sbjct: 63  LRRLRRQGVAAPVIILTARYDLQDRISGLDAGGDDYLPKPFALGELEARIRALLRRGSSS 122

Query: 123 NNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 G   +  D   R   V      L  RE  +LE L+  +G+ ++K QI  ++Y  
Sbjct: 123 GASLTLGFGDLMLDPAARIATVHDHELMLTAREMAVLELLLRRQGRIISKQQIIESLY-T 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +  + +E  +S+LR+KL +      +   R LGY ++
Sbjct: 182 WASDINPSSIEVFVSRLRRKLEDAGAGVGIRMLRGLGYRLE 222


>gi|328956993|ref|YP_004374379.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673317|gb|AEB29363.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 230

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 16/161 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R IR  S VP+I ++   S+   +   D G DD + KP    E+LAR+ A++RR++
Sbjct: 63  IDVCRRIRQVSNVPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALFRRIE 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQG---------EVFPLPRRERRILEYLMANRGKRVAKT 171
           + + +  T    V    RD  V+          EV  L +RE  +L  LM N    +A+ 
Sbjct: 123 IESEQNITKQTTVTY--RDLTVEKENRVVRRGDEVIELTKREYELLLELMENVNVVLARD 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
            + + ++G ++  VE NVV+ +I    + LRNK+    VDS
Sbjct: 181 VLLNKVWG-YETEVETNVVDVYI----RYLRNKIDVPNVDS 216


>gi|323141127|ref|ZP_08076030.1| putative transcriptional regulatory protein QseB
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414393|gb|EFY05209.1| putative transcriptional regulatory protein QseB
           [Phascolarctobacterium sp. YIT 12067]
          Length = 237

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 3/163 (1%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L + +R    Q  ++ ++   +L   +   +SG DD + KP    E++AR+ A+ RR 
Sbjct: 76  LDLCKRLREEDYQGKILLLTAKDTLADKVQGLNSGADDYLVKPFELEELVARLNALCRRQ 135

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S  +   G   + S             L  RE ++LE L+ NRG+ + +  +   I+
Sbjct: 136 GQYSAEKLRYGAYTLESSTYCLAYGERRVELRPREFKLLELLLRNRGQVMPRAVLQDRIW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G+ D  V EN ++ HI  LRKK+    G + + + R +GY ++
Sbjct: 196 GI-DSDVTENNLDVHIRLLRKKIMELNGEELIKTMRGVGYYVE 237


>gi|302553204|ref|ZP_07305546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470822|gb|EFL33915.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 233

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 31/226 (13%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL +DG++     DG+S LE F +           R D++ ++  +   G   + L R I
Sbjct: 23  ALERDGFVVTAMPDGLSGLEAFRA----------DRPDIALLDVMV--PGLDGVSLCRRI 70

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           R  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR       RA
Sbjct: 71  RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHAGGGRA 130

Query: 127 ET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           E             G + V ++G +    G    L   E R+L    +  G  +++ ++ 
Sbjct: 131 EEPASPADGGVLTFGDLEVDTEGMEVRRAGRPVALTPTEMRLLLEFSSAPGTVLSRDKLL 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +    +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 191 ERVWD-YGWGGDTRVVDVHV----QRLRQKIGQDRIETVRGFGYKL 231


>gi|209546451|ref|YP_002278369.1| two component winged helix family transcriptional regulator
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537695|gb|ACI57629.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 228

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 15/170 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  SQVP++ ++        +   + G DD V KP    E+ AR+ AI RR  
Sbjct: 61  IEVLQRIRKLSQVPVLMLTARGDDVDRISGLNLGADDYVPKPCSPGELAARLRAILRRAG 120

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS +    G + + S  R  E +GE   L   E  +LE L  + G+ V+K  I  
Sbjct: 121 QPAAGVSTDTIRAGQLVIHSGSRSAEWRGETLELTGTEFSLLEVLARSAGQLVSKQDISK 180

Query: 176 AIYGL----FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +G     FD       ++ HIS +R+KL   + G   + S R  GY +
Sbjct: 181 RAFGKPLTPFDRR-----IDVHISSVRQKLGLREDGQSWIQSVRGQGYQL 225


>gi|169828325|ref|YP_001698483.1| regulatory protein [Lysinibacillus sphaericus C3-41]
 gi|168992813|gb|ACA40353.1| Regulatory protein [Lysinibacillus sphaericus C3-41]
          Length = 218

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           K  K  E+ ++ R+   +P+I ++        +  FD G++D + KP     ++ RV A+
Sbjct: 55  KMPKRYEVVKMFRSQFNIPIIFLTALEEELGKIKGFDPGINDYITKPFPFHVLIRRVQAV 114

Query: 116 YRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR   +N  N      ++V        V  E   L  +E +IL+ L+ N  K + +  I
Sbjct: 115 LRRSNNTNLENYLYFNQLQVDCKRIKVYVNKEEIQLTTKEFKILQLLLRNEKKVLTRNTI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++  ++ + E   +++HI  +RK    KL    + + R +GY ID
Sbjct: 175 IQKVWD-YEYSGETRKIDAHIKNIRK----KLNIPYIKTVRGIGYKID 217


>gi|218895705|ref|YP_002444116.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228899336|ref|ZP_04063599.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|218542826|gb|ACK95220.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228860367|gb|EEN04764.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 225

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 8/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNE 121

Query: 122 SNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  G   V+ + +    V  E   L   E  +L   + +    +++ Q+   I+GL
Sbjct: 122 HKQIQYHGI--VWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
            +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 180 -NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220


>gi|17158720|ref|NP_478231.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134669|dbj|BAB77227.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 231

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 12/170 (7%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LEL + +R   S +P++ ++    ++  +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LELCKRLRYRQSPLPVLMLTAKDRMEDKVTGLDAGADDYLVKPFGMAELLARLRALQRRS 121

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L V N   + G   V S     + Q     L  +E ++LEY M +  + V   
Sbjct: 122 PQFQPQELTVGNLTLDYGNNMVVSQNNTGKKQE--ISLTNKEFQLLEYFMKHPNQIVTTE 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           QI + ++ +  E +  NVV + +  LR+KL N    + +++    GY ++
Sbjct: 180 QIRNQLWEVSAEPI-SNVVAAQMRLLRRKLTNSGCGNMIETLHGTGYRLN 228


>gi|15597719|ref|NP_251213.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107101969|ref|ZP_01365887.1| hypothetical protein PaerPA_01003016 [Pseudomonas aeruginosa PACS2]
 gi|116050466|ref|YP_790715.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152984654|ref|YP_001348074.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218891499|ref|YP_002440366.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254235520|ref|ZP_04928843.1| hypothetical protein PACG_01439 [Pseudomonas aeruginosa C3719]
 gi|254240954|ref|ZP_04934276.1| hypothetical protein PA2G_01634 [Pseudomonas aeruginosa 2192]
 gi|296389055|ref|ZP_06878530.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313107420|ref|ZP_07793610.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9948578|gb|AAG05911.1|AE004679_5 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|5921515|emb|CAB56468.1| czrR protein [Pseudomonas aeruginosa]
 gi|115585687|gb|ABJ11702.1| putative DNA-binding heavy metal response regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126167451|gb|EAZ52962.1| hypothetical protein PACG_01439 [Pseudomonas aeruginosa C3719]
 gi|126194332|gb|EAZ58395.1| hypothetical protein PA2G_01634 [Pseudomonas aeruginosa 2192]
 gi|150959812|gb|ABR81837.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218771725|emb|CAW27499.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|261411913|gb|ACX81358.1| CzcR [Pseudomonas aeruginosa]
 gi|310880112|gb|EFQ38706.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 224

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 21/171 (12%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L R +R  S   ++ ++ +  L   +   D G DD + KP    E+LARV ++ RR   
Sbjct: 61  DLLRRLRERSSARVMMLTGHGRLTDKVRGLDLGADDFMVKPFQFPELLARVRSLLRRHDQ 120

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKT 171
                 L+V++   +    R F        +G V   L  +E  +L  LM   G  + +T
Sbjct: 121 APMQDVLRVADLELDASRHRAF--------RGRVRINLTTKEFALLHLLMRRNGDVITRT 172

Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           QI S I+ + FD   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 173 QIISLIWDMNFDN--DSNVVEVAICRLRAKIDDGFDLKLIHTIRGVGYVLE 221


>gi|296448436|ref|ZP_06890320.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296254060|gb|EFH01203.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 230

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 6/153 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET 128
           + P + +S    +   +    +G DD V KP    E+LARV A+ RR    K        
Sbjct: 75  ETPALILSALGQVDDRVKGLRAGGDDYVAKPYAFSELLARVEALARRRGGAKQEETVYRV 134

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187
           G + +          G+   L  RE R+LEYLM + G+ V +T +   ++   FD   + 
Sbjct: 135 GDLELDRLAHKVTSAGQEIVLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFDP--QT 192

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           NV++ HIS+LR K+        + + R  GY I
Sbjct: 193 NVIDVHISRLRAKIDKSRETPLLHTIRGAGYMI 225


>gi|291514345|emb|CBK63555.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Alistipes shahii WAL
           8301]
          Length = 226

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 17/150 (11%)

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + ++++A S+   VP+I  +   S   T+   + G DD + KP   RE+LARV ++ RR 
Sbjct: 64  MAQLLKADSETARVPMIFCTAKDSEDDTVAGLNIGADDYITKPFSVREVLARVRSVLRR- 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             S  RAE+  I    +G + +++       G+   L ++E  IL  L++NRG   ++ +
Sbjct: 123 -TSAARAESESIHF--EGLEIDLRRKVCTLDGKELQLTKKEFEILALLLSNRGVIFSREE 179

Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           I   I+   DE  V +  V+ +I++LR+K+
Sbjct: 180 ILRRIWS--DEVIVLDRTVDVNITRLRRKV 207


>gi|229012628|ref|ZP_04169801.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228748651|gb|EEL98503.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 7/157 (4%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K+ S  + 
Sbjct: 78  RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQKI 137

Query: 127 ETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             G   V  D +  +V    E   LP +E  +L  L    G+   + Q+   I+G+ D A
Sbjct: 138 HFG--NVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGI-DYA 194

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  V+ HI +LR++      F  +++ R LGY ++
Sbjct: 195 GDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLE 230


>gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQHVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|226228192|ref|YP_002762298.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091383|dbj|BAH39828.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 238

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 18/178 (10%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           +E L  ++R+ + AI   L       L L + +RA +QVP++ +S      + +   ++G
Sbjct: 39  QEGLTIASRQTLDAIILDLGLPDSTGLALCQSLRAFTQVPILVLSAMHDENSKVALLNAG 98

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-------GEVF 147
            DD V KP    E++AR+ A  RR  VS+ R    P+ +     + ++Q       G+  
Sbjct: 99  ADDYVTKPFSSAELVARIHAHVRR--VSDRRDGISPVLLRLGDVELDLQQRVATRAGQPL 156

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAI----YGLFDEAVEENVVESHISKLRKKL 201
            L   E  +L  L+A RG+ +   Q+F A+    YG  D ++   V   H++ LR+K+
Sbjct: 157 RLTPTEWTLLRVLVAQRGRTMTHRQLFLAVWNREYG--DASLHLRV---HLTHLRRKI 209


>gi|167760380|ref|ZP_02432507.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704]
 gi|167662053|gb|EDS06183.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704]
          Length = 231

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  S VP++ +S   SL       + G DD + KP    E+LAR+ A  RR  
Sbjct: 60  MDVMKTIREKSVVPILIVSAKDSLLDKSLGLELGADDYITKPFVMAEVLARIKANLRRTN 119

Query: 121 V----SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                S+ + E       G I++         +G+   L  +E  IL  LM N  K   K
Sbjct: 120 QYAAGSSRKQEEPATLSCGDIQLNPADFTVRKRGKKIDLTAKEFEILRLLMQNPKKVYTK 179

Query: 171 TQIFSAIYGLFDEAV--EENVVESHISKLRKKLRN 203
            QI+S ++   ++A   +EN V  HIS+LR K+ +
Sbjct: 180 EQIYSLVW---EDAYLGDENAVNVHISRLRNKIED 211


>gi|160939367|ref|ZP_02086717.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437577|gb|EDP15339.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|291540515|emb|CBL13626.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 13/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR    N++A
Sbjct: 67  IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNHQA 126

Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
                 +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+  ++G 
Sbjct: 127 GAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 186

Query: 180 --LFDEAVEENVVESHISKLRKKL 201
              +D++   N++ + IS+LRKKL
Sbjct: 187 EYFYDDS---NIM-AIISRLRKKL 206


>gi|154505490|ref|ZP_02042228.1| hypothetical protein RUMGNA_03027 [Ruminococcus gnavus ATCC 29149]
 gi|153794148|gb|EDN76568.1| hypothetical protein RUMGNA_03027 [Ruminococcus gnavus ATCC 29149]
          Length = 223

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 5/158 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR    +P++ ++    +Q  L   + G D+ + KP H   +LAR   + +R  + 
Sbjct: 63  LCKEIRKKGSLPILVLTSRDKMQDELKALELGADEYLTKPCHKDRLLARTENLLKR-AMG 121

Query: 123 NNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           N     G   +F        QG +   +P  + +IL+ L+   G  V K  I   ++G  
Sbjct: 122 NAHLLDGDDFLFDTRTYTVCQGKDACHIPENQGKILKILLEYAGTEVKKECISKVLWGT- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            E ++EN ++ ++++L+K L+  LG +  +++ R  GY
Sbjct: 181 TEYIDENALQVNVTRLKKTLK-ALGLENRIETIRGRGY 217


>gi|163849781|ref|YP_001637824.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|163661386|gb|ABY28753.1| response regulator receiver [Methylobacterium extorquens PA1]
          Length = 232

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R +R  +   P++ +S    +   +    +G DD + KP    E+LAR   + RR 
Sbjct: 60  LSLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRR 119

Query: 120 KVSNNRAETGPIRVFS---DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +  ++E    RV     D     V   G    L  RE R+LEYLM + G+ V +T + 
Sbjct: 120 TAATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLL 179

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++   FD   + NV++ H+S+LR K+        + + R  GY I
Sbjct: 180 EHVWDYHFDP--QTNVIDVHVSRLRAKIDRGFEHPMIHTVRGAGYVI 224


>gi|152969364|ref|YP_001334473.1| DNA-binding transcriptional regulator BasR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238893828|ref|YP_002918562.1| DNA-binding transcriptional regulator BasR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330014488|ref|ZP_08307928.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
 gi|150954213|gb|ABR76243.1| response regulator in two-component regulatory system with BasS
           (OmpR family) [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238546144|dbj|BAH62495.1| OmpR family response regulator in two-component regulatory system
           with BasS [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328533015|gb|EGF59789.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
          Length = 223

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D AL+  G I     +G   +G ++    E   S A    S I   L    E  L
Sbjct: 3   ILVIEDDALLLQGLILAMQSEGYVCDGVST--AHEAALSLASNHYSLIVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L R+ R     P++ ++   +L+  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N    G +R+    R   +      L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR+    K+G   + + R  GY +  N
Sbjct: 181 -WDNEPATNTLEVHIHNLRE----KIGKSRIRTVRGFGYMLANN 219


>gi|21232537|ref|NP_638454.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21243976|ref|NP_643558.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|66767377|ref|YP_242139.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78048921|ref|YP_365096.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|166713155|ref|ZP_02244362.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188990477|ref|YP_001902487.1| two-component system response regulator receiver / transcriptional
           regulator [Xanthomonas campestris pv. campestris str.
           B100]
 gi|289661862|ref|ZP_06483443.1| two-component system response regulator receiver / transcriptional
           regulator [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289666946|ref|ZP_06488021.1| two-component system response regulator receiver / transcriptional
           regulator [Xanthomonas campestris pv. musacearum
           NCPPB4381]
 gi|294624278|ref|ZP_06702985.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665372|ref|ZP_06730662.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325916232|ref|ZP_08178513.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|21109590|gb|AAM38094.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21114330|gb|AAM42378.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572709|gb|AAY48119.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78037351|emb|CAJ25096.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|167732237|emb|CAP50429.1| two-component system response regulator receiver / transcriptional
           regulator [Xanthomonas campestris pv. campestris]
 gi|292601421|gb|EFF45451.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604875|gb|EFF48236.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325537526|gb|EGD09241.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 225

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 16/210 (7%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR--AHS 71
           G+   F  DGV+            L  +   +  AI   L   G   +E+ R +R  A  
Sbjct: 24  GHTVDFAADGVT-----------GLHLAVVHEFDAIVLDLNLPGMDGIEVCRKLRNEARK 72

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
           Q P++ ++   SL   L  FDSG DD + KP   +E+  R+ A+ RR K  + R  ETG 
Sbjct: 73  QTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRRGKGVHTRVLETGD 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +    D  +   +G++  L     +IL+ LM      V + ++ + ++G  +E  + + +
Sbjct: 133 LEYNLDTLEVRRRGKLLQLNPTALKILQALMEASPAVVTRQELETRVWG--EELPDSDSL 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             HI  LR  +        + ++  +GY I
Sbjct: 191 RVHIHGLRAVVDKPFDVPMIQTRHGIGYRI 220


>gi|150391007|ref|YP_001321056.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950869|gb|ABR49397.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + IR  SQVP++ ++        +   D G DD + KP   +E++ARV AI RR   
Sbjct: 66  EICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             LK        G ++V  D RD E   + E+  L   E ++L   + N GK  ++ ++ 
Sbjct: 126 EGLKAHLIELNGGDLKV--DLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELV 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             + G +D    +  ++ HI  LR K+
Sbjct: 184 VKVLG-YDYVGYDRTIDVHIKNLRHKI 209


>gi|332703144|ref|ZP_08423232.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553293|gb|EGJ50337.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 231

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 9/186 (4%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           S   D   ++  L G G   +E+ R +R  S++P+I ++        +   + G DD V 
Sbjct: 46  SGAYDAVILDVMLPGLGG--VEVLRRVRQASRIPIIMLTAKGDHVDRIVGLEMGADDYVP 103

Query: 101 KPIHHREILARVAAIYRRLKVSNNR--AET---GPIRVFSDGRDPEVQGEVFPLPRRERR 155
           KP + RE++AR+ A+ RR+  +  R   ET   G +++    R     G+   L   E  
Sbjct: 104 KPCYPRELVARLRAVLRRMADAGERPPGETLVQGKLKLLPPQRKVSWDGKPLDLTVSEFN 163

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKR 214
           +LE L+    + V+K ++     G   E  + + V+ H+S LR+KL    G +  +++ R
Sbjct: 164 LLEILLHEGDRVVSKDELSERALGRPREPYDRS-VDVHVSNLRQKLHAAAGDEICIETVR 222

Query: 215 FLGYSI 220
            +GY +
Sbjct: 223 GIGYRV 228


>gi|325266657|ref|ZP_08133334.1| DNA-binding response regulator [Kingella denitrificans ATCC 33394]
 gi|324982100|gb|EGC17735.1| DNA-binding response regulator [Kingella denitrificans ATCC 33394]
          Length = 232

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 22/170 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +RA S++P+I ++        +   + G DD V KP   RE+LAR+ AI RR +
Sbjct: 68  LDVLKTVRAQSKIPVIMLTAKGDDIDRIIGLEMGADDYVPKPCQPRELLARINAILRRAQ 127

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +       N      I +F   R   +      L   E  +LE LM + G+ V+K    
Sbjct: 128 QTTENPSVVNSISASGITLFPAKRQAMIGDAALELTSTEFNLLEVLMRHAGQVVSKEN-- 185

Query: 175 SAIYGLFDEAVEENV------VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                L  EA++  +      ++ HIS +R KL +      + + R LGY
Sbjct: 186 -----LSQEALDRKLAKFDRSIDVHISSIRHKLGDA---SLIQTVRGLGY 227


>gi|319950313|ref|ZP_08024232.1| putative OmpR family two-component response regulator [Dietzia
           cinnamea P4]
 gi|319436005|gb|EFV91206.1| putative OmpR family two-component response regulator [Dietzia
           cinnamea P4]
          Length = 235

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 6/135 (4%)

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVF 147
           D FD G DD + KP     + AR+ A+ RR         E G + V    R+        
Sbjct: 89  DAFDLGADDYLVKPFSFVVLEARLRALVRRGAPERPATFEAGDLVVDPAAREVRRGDTRI 148

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV--EENVVESHISKLRKKLRNKL 205
            +  RE  +LEYL+ NR + V+K QI  A++   D A   ++N+VE ++  LR+K+    
Sbjct: 149 SVTAREYAVLEYLIRNRNQVVSKAQIMRAVW---DSAYDGDDNIVEVYVGYLRRKIDAPF 205

Query: 206 GFDPVDSKRFLGYSI 220
           G   +++ R  GY +
Sbjct: 206 GAHAIETVRGQGYRL 220


>gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 233

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R IR  S VP+I ++        +   + G DD V KP   RE+LARV A+ RR  
Sbjct: 62  FEALREIRKTSDVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVLRRFD 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKT 171
             + + ++  ++V     D E+           EV  L  RE  +L++L +  G+  ++ 
Sbjct: 122 SPDKKDDSSILKVM----DLEIDLNKYQVLRGDEVIELTLREFELLKFLASYPGRVFSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           ++   ++  ++   +   V+  + +LR+K+ + K GF  + +KR +GY
Sbjct: 178 ELLEEVWE-YEYYGDIRTVDVTVRRLREKIEDEKKGFKYIKTKRGVGY 224


>gi|331673604|ref|ZP_08374367.1| transcriptional regulatory protein BaeR [Escherichia coli TA280]
 gi|331068877|gb|EGI40269.1| transcriptional regulatory protein BaeR [Escherichia coli TA280]
          Length = 240

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     + ++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRSKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|307250506|ref|ZP_07532451.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857448|gb|EFM89559.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 201

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +Q+P++ ++   S    +   ++G DD V KP   + ++AR+ ++ RR   +N+      
Sbjct: 46  AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDD 105

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +  + +    Q +   L   E ++L + M +  K  ++ Q+   ++G  D  VE+  V
Sbjct: 106 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 164

Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +S+I +LRK L    GF+  V + R  GY
Sbjct: 165 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 192


>gi|288555603|ref|YP_003427538.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
 gi|288546763|gb|ADC50646.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
          Length = 226

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 27/207 (13%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK--GEKVLELP 64
           D  L K+GY  +   DG + +       E++L+ S       I   ++ K  GE+V +  
Sbjct: 19  DIYLKKEGYDVILAADGETAK-------EQFLKYSP---CLVILDLMLPKISGEEVCQWI 68

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----L 119
           R  +  ++V +I ++   S    +     G DD V KP    E++AR+ A+ RR      
Sbjct: 69  RA-QERNEVSIIMVTAKTSSDHKISGLKMGADDYVTKPFSPNELMARIEAVLRRGGQFCQ 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           K+S+      P       R  EV   GE+ PL + E  +L Y M N    +++ Q+   I
Sbjct: 128 KISHEGLVIKP-------RKGEVLLNGELVPLTKYEFNLLYYFMENPNIVLSREQLIKQI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +   +  + +  +++HI KLR+K+  +
Sbjct: 181 HPDDEADILDRTIDAHIKKLREKIETE 207


>gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 232

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAGNKSALEVGGVIIDPEQRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|261408624|ref|YP_003244865.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329927373|ref|ZP_08281632.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|261285087|gb|ACX67058.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328938512|gb|EGG34897.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 224

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R ++ S    
Sbjct: 69  RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIGSTQTI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + G + +           E   LP +E  +L  L    G+   + Q+   I+G+ D A +
Sbjct: 129 QFGNVILDRQTYKVSSGPETLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWGI-DYAGD 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  V+ HI +LR++      F  +++ R LGY ++
Sbjct: 188 DRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLE 221


>gi|297585569|ref|YP_003701349.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297144026|gb|ADI00784.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 236

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 8/150 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR +
Sbjct: 63  MEVCREVRKEHDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQ 122

Query: 121 VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            S   +ETG        + +  D      +GE   L  RE  ++ YL  + G+ + +  +
Sbjct: 123 RSAEDSETGTKNIDVGVLSIQPDAYLVTKRGEAIELTHREFELIHYLARHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             A++G +D   +   V+  + +LR+K+ +
Sbjct: 183 LQAVWG-YDYFGDVRTVDVTVRRLREKVED 211


>gi|148378772|ref|YP_001253313.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931201|ref|YP_001383160.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936292|ref|YP_001386708.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288256|emb|CAL82330.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927245|gb|ABS32745.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932206|gb|ABS37705.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 230

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 9/167 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            SN    N  +   I +  D R+  +  +   L  RE  IL+ LM    K   K  +F +
Sbjct: 125 FSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKANLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           ++   +   ++N +  HIS LR KL +K G D   + +   +GY +D
Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKL-SKAGTDNEYIQTIWGIGYKLD 229


>gi|138893945|ref|YP_001124398.1| subtilin biosynthesis regulatory protein SpaR [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250503|ref|ZP_03149194.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265458|gb|ABO65653.1| Subtilin biosynthesis regulatory protein SpaR [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209993|gb|EDY04761.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 232

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL  IIR     P++ +S     +  +     G DD + KP   +E+ AR+ +  RR +
Sbjct: 62  MELCTIIRDRVDYPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLRREE 121

Query: 121 V--SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              SN R       +  D    EV  +G+  PL ++E  I++ LM N+    +K +IF  
Sbjct: 122 RIRSNERYLLSSKNITIDLLANEVFCKGKKLPLTKKEYEIVKLLMLNKKVVFSKERIFER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDWN 223
           ++G+  ++  + V ES I  +RKK++     DP  S  +   G    W+
Sbjct: 182 VWGIDSDSQLDTVTES-IKNIRKKIK---AVDPETSYIQTLYGLGYKWD 226


>gi|332300440|ref|YP_004442361.1| two component transcriptional regulator, winged helix family
           [Porphyromonas asaccharolytica DSM 20707]
 gi|332177503|gb|AEE13193.1| two component transcriptional regulator, winged helix family
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 233

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 10/166 (6%)

Query: 62  ELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +L  +IR   ++  P+I ++   +    L  F+ G DD + KP   +E+ AR+ AI  R 
Sbjct: 65  KLAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQAILMRS 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L    ++ E G + +  D +   + GE   L ++E  IL  L  +  K  ++ +I 
Sbjct: 125 LQGGLDFEESQIEIGTLLIDLDAKQVFINGEPIDLTKKELEILILLARDPSKVFSREEIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I+   D  V E  ++ HI+++RKKLR   G   ++   F GY +
Sbjct: 185 DRIWR-EDVFVMERTIDVHITRIRKKLRGS-GIKIINRSGF-GYCL 227


>gi|255746171|ref|ZP_05420118.1| DNA-binding response regulator [Vibrio cholera CIRS 101]
 gi|262168929|ref|ZP_06036623.1| DNA-binding response regulator [Vibrio cholerae RC27]
 gi|255735925|gb|EET91323.1| DNA-binding response regulator [Vibrio cholera CIRS 101]
 gi|262022628|gb|EEY41335.1| DNA-binding response regulator [Vibrio cholerae RC27]
          Length = 203

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    +   +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 48  LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 104

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 105 SGSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 164

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE   +N +E HI  LRKKL + L    V + R +GY I+
Sbjct: 165 G-WDEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 202


>gi|229018483|ref|ZP_04175345.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229024739|ref|ZP_04181178.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228736582|gb|EEL87138.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228742835|gb|EEL92973.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 225

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            +     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 IKLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|239820125|ref|YP_002947310.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239804978|gb|ACS22044.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 229

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 22/222 (9%)

Query: 13  DGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           D  +A F   G+  EGF   ++    + L+ + R D++ +   L+  G   LEL +  RA
Sbjct: 11  DPRVADFLVRGLKAEGFAVTHARTGPQGLELARRGDLALLILDLMLPGINGLELCQTFRA 70

Query: 70  HS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA----------IYRR 118
              Q P++ ++   + +  ++    G DD + KP    E+LAR+ A              
Sbjct: 71  EGGQTPVLMLTAMSTTEDKVNGLRLGADDYLTKPFDFEELLARIEALLRRGRDLRLRVTT 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+V+N   +   +RV       E  G+   L  +E   LE LM+  G+  ++ +I + ++
Sbjct: 131 LRVANLVLDRERMRV-------ERAGQPITLTAKELAFLELLMSAPGRVYSRERILATVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  ++ +  N+V+ ++ +LR K+        + + R LGY I
Sbjct: 184 GTHEDPL-TNIVDVYVRRLRMKIDGDHAVQLLQTVRGLGYRI 224


>gi|158423564|ref|YP_001524856.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158330453|dbj|BAF87938.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 222

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 12/151 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----T 128
           VP+I ++   SL   +   D G DD + KP    E+ AR+    RR   S  RA+     
Sbjct: 73  VPVIILTANASLDGRVAGLDEGADDYLAKPFDMAELEARIRVQLRR---SARRADPIITC 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G +   +  R   +      L  RE  +LE L+   G+ V+K Q+   I+GL D+  + +
Sbjct: 130 GGLAFDTKTRQFRLGEAPLSLTPREHAVLEALLVKTGQTVSKAQLSQTIFGL-DDLADPS 188

Query: 189 VVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
            +E ++ +LR+KL    G D  + + R LGY
Sbjct: 189 AIEIYVHRLRRKLE---GSDVSIVTLRGLGY 216


>gi|156935705|ref|YP_001439621.1| DNA-binding transcriptional regulator BasR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533959|gb|ABU78785.1| hypothetical protein ESA_03574 [Cronobacter sakazakii ATCC BAA-894]
          Length = 220

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D  L+++G     G++G +L+   N+ E +  LQS     +          G  +
Sbjct: 3   LLIVEDDLLLQEGLALALGNEGYALDCAANAAEGDALLQSGEYSLIILDLGLPDKDGATL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R  R+    P++ ++   +L+  +   D+G DD + KP    E+ AR  A+ RR +
Sbjct: 63  LSQWR--RSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  +   I +    +   +QG    +  +E  +L  LM   G+ V +  +   IY 
Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGMPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+    N +E HI  LR+    KLG   + + R +GY ++
Sbjct: 181 WQDDP-SSNTLEVHIHNLRR----KLGKTRIRTIRGVGYRLE 217


>gi|78188418|ref|YP_378756.1| two component transcriptional regulator [Chlorobium chlorochromatii
           CaD3]
 gi|78170617|gb|ABB27713.1| two component transcriptional regulator, winged helix family
           [Chlorobium chlorochromatii CaD3]
          Length = 225

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 2/161 (1%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +R A   VP+I ++   +L+  L   ++G +D + KP    E+LAR+    R  
Sbjct: 60  IEVCRQVRKAGCLVPIIFLTARDTLEDVLFGLEAGANDYIKKPFAFEELLARIRVQLRSR 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +          G    L  +E  +LEYL+ N+ +   +++I   ++ 
Sbjct: 120 TQGEESLSAGGVTLNPATHQVTYNGSELILTPKEFALLEYLLRNKDRVCTRSRIIEHVWD 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +A + +V++ +I+ LR+KL      + + + R +GY I
Sbjct: 180 IHFDA-DTSVIDVYITFLRRKLEAVGCNNFIQTIRGIGYII 219


>gi|54307452|ref|YP_128472.1| transcriptional regulator CpxR [Photobacterium profundum SS9]
 gi|46911872|emb|CAG18670.1| hypothetical transcriptional regulator CpxR [Photobacterium
           profundum SS9]
          Length = 162

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 18/141 (12%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP-------IRVFSDGRDPEV 142
            + G DD + KP   RE+LAR+ AI RR +++ NN+    P       I ++   ++   
Sbjct: 21  LELGADDYLPKPFSDRELLARIRAILRRTQLTENNQRANEPECISYQDINIYPGRQEVFC 80

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLR 198
            GE   +   E  +L YL+ + GK +AK ++   + G     FD A     ++ H+S LR
Sbjct: 81  LGESIEMTGTELALLSYLIQHPGKIIAKNELSMEVLGKRLAQFDRA-----IDMHVSNLR 135

Query: 199 KKLRNKLGFDP-VDSKRFLGY 218
           KKL  +    P + + R  GY
Sbjct: 136 KKLPERADGKPRIKTLRGKGY 156


>gi|109897312|ref|YP_660567.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109699593|gb|ABG39513.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 235

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 10/134 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL---------KVSNNRAETGPIRVFSDGRDPEVQG 144
           G DD + KP +HRE+ ARV AI RR+         K   N  E G + +    +      
Sbjct: 97  GADDYLAKPFNHRELSARVKAIVRRVDIQAGLQSDKQKQNTIEIGDVELNIAAQTVACNA 156

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +   L   E  +L+ LM+     V K  I   + G    A + + ++ H+S LRKKL + 
Sbjct: 157 QQVELTGTEFAVLKLLMSCSPDLVPKQAISEQVLGRKLAAFDRS-IDMHVSNLRKKLSHF 215

Query: 205 LGFDPVDSKRFLGY 218
              D + + R +GY
Sbjct: 216 SDHDKIKTHRGVGY 229


>gi|325841247|ref|ZP_08167348.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325489928|gb|EGC92275.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 230

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ ++ Y         F +G DD + KP  + ++L RV A+ RR    ++  
Sbjct: 67  IRQKSFVPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALLRRAYQYHSTT 126

Query: 127 ET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G + V  +     ++G+   L   E +IL  L+ +R K  +  QI+ +I+
Sbjct: 127 QVKVEPTITIGDLVVDLNSTRVILEGKEVSLTTTEYKILRLLITHRKKIFSMEQIYQSIW 186

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
               + + +N V  H+  LRKK+
Sbjct: 187 NDSGQVIGDNAVMVHVRNLRKKI 209


>gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
 gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
          Length = 223

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 20/187 (10%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---HSQVPLIGISDYPSLQT 86
           + LE  E L+S  + D+  ++  L   G   L+L R +R    +   P+I ++      T
Sbjct: 33  DGLEARELLKSR-KYDIIVLDLML--PGVNGLDLCREVRLRGINKDTPIIVLTAIGDEDT 89

Query: 87  TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--G 144
            +   ++G DD V KP   +E+LAR+ A+ RR   S      G   +  D R   V   G
Sbjct: 90  KVHGLEAGADDYVTKPFSIKELLARIEAVLRRAGYSEVLEFEG---IVEDKRSKSVTVDG 146

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN----VVESHISKLRKK 200
           +   L + E ++LE+ + +  +  ++ ++   I+G     VE N     V+ +IS+LRKK
Sbjct: 147 KPIHLTKTELQLLEFFLEHPEQLFSREELLEKIWG-----VEHNETTRTVDVYISRLRKK 201

Query: 201 LRNKLGF 207
           L +K  F
Sbjct: 202 LGDKGKF 208


>gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 224

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 25/173 (14%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL R +R  S +P++ +S        +   + G DD + KP +  EI+ARV A  RR   
Sbjct: 63  ELTRALRKFSDIPILILSAKSQDNDKILGLNLGADDYITKPFNPVEIVARVKAQLRRASR 122

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L V     +T   ++  +G+    Q  + P+   E +IL  LM + G+   K Q+
Sbjct: 123 SGSDILTVRELTLDTTTFQLTKNGK----QILLTPM---EYKILALLMRSPGRIYTKIQL 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
           +    G + E  ++N +  HISKLR K+ +    DP     + + R LGY ++
Sbjct: 176 YEGAIGNYFEG-DDNTMMVHISKLRDKIED----DPKSPRYIITVRGLGYKLE 223


>gi|206562479|ref|YP_002233242.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038519|emb|CAR54477.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 221

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 20/215 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L + G+      DG +  G   +E         R D+  ++A L G  G  VL   R +R
Sbjct: 20  LARLGHAVDLETDGATANGLLRVE---------RFDLVVLDANLPGMDGFTVL---RNLR 67

Query: 69  AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           A  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR     N   
Sbjct: 68  ASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHANDVL 127

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAV 185
           T G + +    R  E+ G+   L R+E  +LE ++A+R +R+ +K ++ + ++   +E  
Sbjct: 128 TLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKEELLNQLFSFGNEPT 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             N VE +++++R+KL+       + + R +GY I
Sbjct: 187 -ANAVEQYVTRVRRKLQGS--SVEIRTARGMGYQI 218


>gi|152984558|ref|YP_001346459.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7]
 gi|150959716|gb|ABR81741.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7]
          Length = 238

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 11/149 (7%)

Query: 61  LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           L+L R  R H  +  P I ++   + Q  +   +SG DD V+KP    E+ ARVAA+ RR
Sbjct: 66  LQLLRWSREHLDAPPPAIMLTSRDAEQDIVQALNSGADDYVSKPFRPNELKARVAAVLRR 125

Query: 119 LKVSNNRAETGPIRVFSDGR--DPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              +  R     ++ F+D    D E+     G    L  RE R+   L AN G+ +++  
Sbjct: 126 HAAT--RPAQHEMQTFNDLSFDDAELTVTRAGAPISLTEREYRLARCLFANLGRPLSREY 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++   +   +E +    +++HI +LR KL
Sbjct: 184 LYERFWP-HEEVLSSRPLDTHIYRLRNKL 211


>gi|51209875|ref|YP_063539.1| Ycf27 [Gracilaria tenuistipitata var. liui]
 gi|50657629|gb|AAT79614.1| ompR transcriptional regulator [Gracilaria tenuistipitata var.
           liui]
          Length = 241

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 9/146 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           IR  S VP+I ++    +   +   + G DD V KP   +E+ AR+  + RR+ K++ N 
Sbjct: 71  IRKESDVPIIMLTALGDVSDRITGLELGADDYVIKPFSPKELEARIRCVLRRVYKININS 130

Query: 126 A-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G +++ ++ R    + E   L   E  +LE L++  G+  +++ I   ++
Sbjct: 131 SIPSSGILNMGFLKIDTNKRQVYKKNERVRLTGMEFSLLELLVSKAGEAFSRSSILQEVW 190

Query: 179 GLFDE-AVEENVVESHISKLRKKLRN 203
           G   E  V+  VV+ HIS+LR KL +
Sbjct: 191 GYKPERHVDTRVVDVHISRLRAKLED 216


>gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
 gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
          Length = 239

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 13/128 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK--------VSNNRAETGPIRVFSDGRDPEVQGE 145
           G DD + KP   RE++ARV AI RR +        +S+ +     +RVF D  +     +
Sbjct: 96  GADDYLTKPFSPRELIARVKAILRRTEKDQTDDNDLSDEQWVVNGLRVFPDRHEVYKDND 155

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           +  L  +E  +L YL+ +    + + ++   I+G +D   E  +V+ HI KLR+K+ +  
Sbjct: 156 MLNLTPKEYELLLYLIKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKVED-- 212

Query: 206 GFDPVDSK 213
             DP + K
Sbjct: 213 --DPKNPK 218


>gi|325919042|ref|ZP_08181103.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325550478|gb|EGD21271.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 225

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 16/210 (7%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR--AHS 71
           G+   F  DGV+            L  +   +  AI   L   G   +E+ R +R  A  
Sbjct: 24  GHTVDFAADGVT-----------GLHLAVVHEFDAIVLDLNLPGMDGIEVCRKLRNEARK 72

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
           Q P++ ++   SL   L  FDSG DD + KP   +E+  R+ A+ RR K  + R  ETG 
Sbjct: 73  QTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRRGKGVHTRVLETGD 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +    D  +   +G++  L     +IL+ LM      V + ++ + ++G  +E  + + +
Sbjct: 133 LEYNLDTLEVRRRGKLLQLNPTALKILQSLMEASPAVVTRQELETRVWG--EELPDSDSL 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             HI  LR  +        + ++  +GY I
Sbjct: 191 RVHIHGLRAVVDKPFDVPMIQTRHGIGYRI 220


>gi|251782338|ref|YP_002996640.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390967|dbj|BAH81426.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 217

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P+I ++      T L  F+  + D V KP     ++ R+  +  R+ 
Sbjct: 61  LEVLKTIRKTSDIPIIMLTALDDEYTQLVSFNHLISDYVTKPFSPLILIKRIENVL-RVS 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + + + G + V         QG +  L ++E  I++YL     K V + Q+   I+G 
Sbjct: 120 TPDEKHQIGDLLVDEIEHSVYWQGTLVKLTKKEYDIIDYLAKRHQKVVTRDQLMDDIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKL 201
               ++  V+++HI  LRKK+
Sbjct: 180 --SELDTRVLDNHIKNLRKKM 198


>gi|271962011|ref|YP_003336207.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505186|gb|ACZ83464.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 7/138 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  + +P++ +S        +D  D+G DD V KP +  E+LAR+ A+ RR  + +  +
Sbjct: 67  LRGWTSIPIVVLSGRAGGADKVDALDAGADDYVTKPFNIDELLARIRAVTRRTALHD--S 124

Query: 127 ETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           E   IR+     D     V G V   P  E  +LE L+ N GK +++ ++ + ++G    
Sbjct: 125 ELARIRIGDHVVDLVGKTVSGGVRLTP-TEWHLLEILLRNPGKLISQRRLLTEVWG-AKY 182

Query: 184 AVEENVVESHISKLRKKL 201
             E + +  +++++RKKL
Sbjct: 183 LKETHYLRQYMTQMRKKL 200


>gi|171778282|ref|ZP_02919488.1| hypothetical protein STRINF_00330 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282982|gb|EDT48406.1| hypothetical protein STRINF_00330 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 226

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +  I +  +Q  +I ++    +   +   D+G DD + KP   +E+LAR+ ++ RR+   
Sbjct: 63  VQEIRQTGNQSHIIMLTAMAEIDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRRVDTN 122

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  + G +   + G           L  +E ++LE+ M N GK+++  Q+F+ ++  
Sbjct: 123 FTSNILKLGSV-TLNVGEQELASQNTIRLAGKEAKMLEFFMLNPGKKLSTEQLFNHVWAS 181

Query: 181 --FDEAVEENVVESHISKLRKKLRN 203
              D  ++E  V  ++S LR+KL++
Sbjct: 182 DKDDPEIDEGYVFIYVSYLRQKLQS 206


>gi|220911674|ref|YP_002486983.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858552|gb|ACL38894.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 236

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 13/135 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           G DD V KP    E++AR+ A+ RR   L   +     G + +  D  +    G V  L 
Sbjct: 101 GGDDYVTKPFSLDEVVARIRAVLRRTQPLLDDDAVIRVGDLELDDDAHEVRRGGTVIELS 160

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP- 209
             E ++L YLM N  + ++K+QI   ++  +D   + ++VES+IS LR+    K+  DP 
Sbjct: 161 PTEFKLLRYLMLNPNRVLSKSQILDHVWE-YDFNGDASIVESYISYLRR----KVDIDPD 215

Query: 210 ----VDSKRFLGYSI 220
               + +KR +GY +
Sbjct: 216 APALIQTKRGVGYVL 230


>gi|87118795|ref|ZP_01074694.1| two-component system, regulatory protein [Marinomonas sp. MED121]
 gi|86166429|gb|EAQ67695.1| two-component system, regulatory protein [Marinomonas sp. MED121]
          Length = 223

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            GE+VL   R+    +  P++ ++    ++  +   D G DD + KP    E  AR  A+
Sbjct: 58  NGEQVLNKLRV--RQTNTPVLILTARNQVEDRIQLLDLGADDYLTKPFDFGEFDARCRAL 115

Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR +  + N    G + +        V   +  L +RE R+LE  + + G  ++K  + 
Sbjct: 116 LRRHQGQAQNVISYGNLSLDRKACCVYVDQVLVDLKQREFRLLEIFITHTGWVLSKDDLI 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +Y  FDE    N +E ++++LRKKL+       + + R LGY ++
Sbjct: 176 DHLYN-FDEPPSPNAIELYVARLRKKLQTSAV--EIRTLRGLGYILE 219


>gi|188494474|ref|ZP_03001744.1| DNA-binding response regulator CreB [Escherichia coli 53638]
 gi|254037410|ref|ZP_04871487.1| DNA-binding response regulator CreB [Escherichia sp. 1_1_43]
 gi|260858572|ref|YP_003232463.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O26:H11 str. 11368]
 gi|188489673|gb|EDU64776.1| DNA-binding response regulator CreB [Escherichia coli 53638]
 gi|226840516|gb|EEH72518.1| DNA-binding response regulator CreB [Escherichia sp. 1_1_43]
 gi|257757221|dbj|BAI28723.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O26:H11 str. 11368]
 gi|284924577|emb|CBG37716.1| two-component response regulator [Escherichia coli 042]
 gi|309704906|emb|CBJ04259.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|323157712|gb|EFZ43817.1| transcriptional regulatory protein creB [Escherichia coli EPECa14]
 gi|323935191|gb|EGB31554.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323960113|gb|EGB55758.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|332346446|gb|AEE59780.1| transcriptional regulatory protein CreB [Escherichia coli UMNK88]
          Length = 229

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+    +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQAPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   +++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-IDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|15599227|ref|NP_252721.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107103546|ref|ZP_01367464.1| hypothetical protein PaerPA_01004616 [Pseudomonas aeruginosa PACS2]
 gi|116052069|ref|YP_789087.1| two-component regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889687|ref|YP_002438551.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254236921|ref|ZP_04930244.1| hypothetical protein PACG_02944 [Pseudomonas aeruginosa C3719]
 gi|254242715|ref|ZP_04936037.1| hypothetical protein PA2G_03479 [Pseudomonas aeruginosa 2192]
 gi|296387414|ref|ZP_06876913.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313109475|ref|ZP_07795431.1| putative two-component regulator [Pseudomonas aeruginosa 39016]
 gi|9950227|gb|AAG07419.1|AE004820_4 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115587290|gb|ABJ13305.1| probable two-component regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168852|gb|EAZ54363.1| hypothetical protein PACG_02944 [Pseudomonas aeruginosa C3719]
 gi|126196093|gb|EAZ60156.1| hypothetical protein PA2G_03479 [Pseudomonas aeruginosa 2192]
 gi|218769910|emb|CAW25671.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310881933|gb|EFQ40527.1| putative two-component regulator [Pseudomonas aeruginosa 39016]
          Length = 238

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 11/149 (7%)

Query: 61  LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           L+L R  R H  +  P I ++   + Q  +   +SG DD V+KP    E+ ARVAA+ RR
Sbjct: 66  LQLLRWSREHLDAPPPAIMLTSRDAEQDIVQALNSGADDYVSKPFRPNELKARVAAVLRR 125

Query: 119 LKVSNNRAETGPIRVFSDGR--DPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 R     ++ F+D    D E+     G    L  RE R+   L AN G+ +++  
Sbjct: 126 --HGGTRPAQHEVQTFNDLSFDDAELTVTRAGAPISLTEREYRLARCLFANLGRPLSREY 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++   +   +E +    +++HI +LR KL
Sbjct: 184 LYERFWP-HEEVLSSRPLDTHIYRLRNKL 211


>gi|328954866|ref|YP_004372199.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328455190|gb|AEB06384.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 247

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 12/172 (6%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           GE+++EL   IRA  +  P+I IS   +    +D    G DD + KP    E+LARV   
Sbjct: 77  GEQLVEL---IRARDASAPIIVISARAAPSDKIDLLKLGADDYLAKPFDLDELLARVEVQ 133

Query: 116 YRRLKVSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            R  +  +  A             + ++ R     GE   L R E  I+E LM +  +  
Sbjct: 134 LRHRRAPSGTAPGAHGALGFRSWELDTEARTLTAHGEPVALTRIEFNIVEILMRHPRRVF 193

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            K ++F   +G    A ++N +  H+S +R KLR     D + +   +G+ +
Sbjct: 194 TKQELFEGAWG-EPYAADDNTINVHVSNIRTKLRASGTADYIRTVWGMGFKL 244


>gi|300853845|ref|YP_003778829.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433960|gb|ADK13727.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 229

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 11/159 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR +S VP+I +S        +     G DD + KP   RE+ ARV A  RR  
Sbjct: 62  IEVLRKIRENSTVPVIILSAKNEETDRVIGLSMGADDYMIKPFSTRELAARVKAQLRRYI 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIF 174
             NN  +  P   +   +      + F       L  +E  +L++ + N  +   K QIF
Sbjct: 122 YYNNVHDKNPTLTYKSLKLDTSNHKFFKEDKELNLTPKEFELLKFFLKNPDRVFTKAQIF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           + ++   D   ++N V  HI    K+LRNK+  +P + K
Sbjct: 182 NGVWE-NDYLHDDNTVMVHI----KRLRNKIEDNPNNPK 215


>gi|254292563|ref|YP_003058586.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254041094|gb|ACT57889.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 230

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 17/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60
             L+DD   + +   A F  +G ++  ++  + E  LQ  A        A L  K  K+ 
Sbjct: 4   IALVDDDENIVESLKAFFEAEGYTVRAYH--DGEAALQGLAEHPPEL--AILDVKMPKMD 59

Query: 61  -LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +EL R +R  S +P I ++        +  F+ G DD + KP   R +  RV A+ RR 
Sbjct: 60  GMELLRRLRQTSNLPAIFLTSKDDEIDEVVGFNIGADDFIRKPCSMRLLSERVKAVLRRS 119

Query: 120 KVS--NNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + +  +   +  PI   S   DP       +GEV  L   E  IL+ L    G   ++ Q
Sbjct: 120 RGAGVSEEGDKKPIVRGSLTLDPNRHACTWKGEVVRLTVTEFLILQALSTRPGYVKSRDQ 179

Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           +  A Y   D+  V++  ++SHI +LRKK R++   FD +++   +GY
Sbjct: 180 LMDAAYD--DQVYVDDRTIDSHIKRLRKKFRDQDDEFDSIETLYGVGY 225


>gi|229099289|ref|ZP_04230220.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229118303|ref|ZP_04247659.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228665133|gb|EEL20619.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228684107|gb|EEL38054.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 229

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    K S  
Sbjct: 66  RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125

Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEVDVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +G ++ A ++  V SHI  LR KL  K  +
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
 gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
          Length = 231

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N    + E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGIIRIRSVEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETVMNGEKFIHTVWGVGYKIE 230


>gi|198242939|ref|YP_002215027.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937455|gb|ACH74788.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326622781|gb|EGE29126.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 226

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 18  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 67  RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+        + + R +GY +
Sbjct: 185 TNTVDVAIRRLRAKVDEPFEKKLIMTVRGMGYRL 218


>gi|49481182|ref|YP_036122.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332738|gb|AAT63384.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 254

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R + ++P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 97  LRKYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 156

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 157 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 215

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 216 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 251


>gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 248

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 40  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 88

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 89  RTAHQSPAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 148

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 149 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 206

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + R +GY +
Sbjct: 207 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 273

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 20/205 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRAH-SQVPLIGI 78
           +L +E W   +A   + A+ A    + + V           LE+ R +RA  + VP++ +
Sbjct: 59  TLRYEGWEVQTAGNGLDAVRAARSFRPDAVILDIMLPDIDGLEVLRRLRADATDVPVLFL 118

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVF 134
           +   +++  +    +G DD V KP    E++AR+ ++ RR  +   + E     G + + 
Sbjct: 119 TAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRRSGLVAAKQEPVLAVGDLVLD 178

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D  +    G+   L   E  +L YLM N  + ++K QI   ++  +D   + N+VE ++
Sbjct: 179 EDSHEVTRAGQEIRLTATEFELLRYLMRNPRRVLSKAQILDRVWN-YDFGGQANIVELYV 237

Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGY 218
           S LR+K+    G +P + + R  GY
Sbjct: 238 SYLRRKI--DAGRNPMIHTVRGAGY 260


>gi|325568329|ref|ZP_08144696.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325158098|gb|EGC70251.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 228

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 3/152 (1%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            ++ K + +  L  + + + + P+I ++    +   +   D+G DD + KP   +E+LAR
Sbjct: 52  IMLPKIDGITLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLAR 111

Query: 112 VAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           + ++ RR  L    ++   G + +  +            L  +E +++E  +A     ++
Sbjct: 112 IRSLGRRKDLDYQEDQLAFGNVGLDRNELQLATPSNQVVLSPKEMKLMELFLARPKVILS 171

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           K  I + I+G FD  VEEN VE ++S LRKKL
Sbjct: 172 KETIINKIWG-FDPDVEENRVEIYVSLLRKKL 202


>gi|323351005|ref|ZP_08086662.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|322122729|gb|EFX94438.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
          Length = 234

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N  + G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E R++E+LM N  K ++  +IF  ++    DE ++E  V  +IS LR+KL+
Sbjct: 151 AGKESRMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204


>gi|308187698|ref|YP_003931829.1| transcriptional regulator [Pantoea vagans C9-1]
 gi|308058208|gb|ADO10380.1| Probable transcriptional regulator [Pantoea vagans C9-1]
          Length = 226

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 24/216 (11%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D  + L G  G+  +G  S EF   +      D+S I+              R +R +S+
Sbjct: 26  DAQLVLTGSAGI--QGALSGEFTAMILDIMLPDMSGIDVL------------RQVRQNSR 71

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           +P+I ++        +   + G DD + KP + RE++AR+ A+ RR +    + +     
Sbjct: 72  IPVIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFEEQVPQPDAKEPL 131

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +    R  E QG+ F L   E  +L+ L+    + V+K ++     G   EA +
Sbjct: 132 RWGDLTLNPATRMSEWQGKTFDLTASEFNLLDLLLRAPDRVVSKDELSEKGLGRPREAYD 191

Query: 187 ENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220
            + V+ HIS +R+KL + L  D ++  + R +GY I
Sbjct: 192 RS-VDVHISNIRQKL-SALTADSINIETVRSIGYRI 225


>gi|270263749|ref|ZP_06192018.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042633|gb|EFA15728.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 229

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 73/161 (45%), Gaps = 20/161 (12%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I +S   + +  +   D+G DD ++KP    E+LARV    RR   S  
Sbjct: 69  RDLRQWSAIPVIVLSARNAEEDKIAALDAGADDYLSKPFGIGELLARVRVALRRHSGSQQ 128

Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   P+  FS+       R     GE   L   E R+L  L+AN GK + + Q+ S ++
Sbjct: 129 ES---PLVSFSEITVDLINRRVLRNGEDLHLTPIEFRLLAELLANSGKVITQRQLLSHVW 185

Query: 179 GLFDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216
           G        N VE H   LR     LR KL  DP   K  L
Sbjct: 186 G-------PNYVE-HSHYLRIYMGHLRQKLEADPARPKHLL 218


>gi|257877070|ref|ZP_05656723.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC20]
 gi|257811236|gb|EEV40056.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC20]
          Length = 228

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 3/152 (1%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            ++ K + +  L  + + + + P+I ++    +   +   D+G DD + KP   +E+LAR
Sbjct: 52  IMLPKIDGITLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLAR 111

Query: 112 VAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           + ++ RR  L    ++   G + +  +            L  +E +++E  ++     ++
Sbjct: 112 IRSLSRRKDLDYQEDQLAFGNVVLARNELQLATTTNQVVLSPKEMKLMELFLSRPKVILS 171

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           K  I + I+G FD  VEEN VE ++S LRKKL
Sbjct: 172 KETIINKIWG-FDPDVEENRVEIYVSLLRKKL 202


>gi|291294437|ref|YP_003505835.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469396|gb|ADD26815.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 220

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIR 132
           P++ ++   +L   +   D G DD V KP    E+LARV A+ RR+ +V  +R + GP+ 
Sbjct: 76  PILFMTARDALADRVMGLDEGGDDYVVKPFDLPELLARVRALLRRMSEVKQSRVQLGPLE 135

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    R    +G +  L  RE  +LE L    G+  +  ++   I+G  +EA +  VV+ 
Sbjct: 136 LDLADRSVRWEGRLVELSGREYALLERLALFPGRVYSPEELLDLIWG--EEASDTGVVKV 193

Query: 193 HISKLRKKLRNKL 205
            +  LR KL +++
Sbjct: 194 CVHHLRNKLDSRV 206


>gi|225027357|ref|ZP_03716549.1| hypothetical protein EUBHAL_01613 [Eubacterium hallii DSM 3353]
 gi|224955359|gb|EEG36568.1| hypothetical protein EUBHAL_01613 [Eubacterium hallii DSM 3353]
          Length = 250

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD + KP    E+ ARV A  RR +   + A T   I++    ++  V      L + 
Sbjct: 124 GADDYLTKPFRIAELRARVNAHLRRERRERHTALTFDRIKIDLSEKELRVDNTPVALTKS 183

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  I EYL  N+G+  +K QI+ A++ L  ++ + + + +HI  +R KL NKL   P+ +
Sbjct: 184 EYLICEYLARNKGQVFSKEQIYEAVFSLEGDS-DNSTISTHIKNIRSKL-NKLDIQPIAT 241

Query: 213 KRFLGY 218
              +GY
Sbjct: 242 VWGIGY 247


>gi|145301037|ref|YP_001143878.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853809|gb|ABO92130.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|148292091|emb|CAN84664.1| transcriptional regulatory protein CpxR [Aeromonas salmonicida
           subsp. salmonicida]
          Length = 231

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NR 125
           +R     P++ ++     Q  ++  ++G DD + KP   RE+LAR+ AI RR + +   R
Sbjct: 67  LRETHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARIRAILRRTQSAQPQR 126

Query: 126 AETG-PIR----VFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             T   IR    V   G      GE +  L   E  +LE L+ N G+ V+K+Q+   + G
Sbjct: 127 GGTSEEIRFMDLVLQPGLQQASSGEQLLELTATEFGLLECLLRNPGQIVSKSQLSELVLG 186

Query: 180 L----FDEAVEENVVESHISKLRKKLRNKLGFDP 209
                FD A     ++ H+S LRKKL  +    P
Sbjct: 187 KKLEPFDRA-----IDMHLSNLRKKLPERTDGQP 215


>gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 231

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N    + E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGMIRIRSAEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|300863556|ref|ZP_07108502.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300338423|emb|CBN53644.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 232

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 21/203 (10%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L ++ YI  +  +G         E  E+L+S   +   AI  +L+  G   LEL + +
Sbjct: 18  RTLNQEKYIVDWAQNGN--------EAWEYLESQWTQYTLAIFDWLL-PGLSGLELCQRL 68

Query: 68  RA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           RA ++ +P++ ++    ++  +   D+G DD + KP    E+LAR+ A+ RR        
Sbjct: 69  RAKNNHLPVLMLTARDRMEDKVAGLDAGADDYLVKPFGMAELLARLRALQRRSPQLQPEQ 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L V N   + G   V+      E Q  +  L  +E ++LEYLM +  + V   +I + I+
Sbjct: 129 LTVVNLTLDYGTRTVYHFNLKGEKQ--IISLTNKEFQLLEYLMRHPNQIVTSDRIRNQIW 186

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
              D     NVV + +  LR+KL
Sbjct: 187 E-ADADAFSNVVAAQMRLLRRKL 208


>gi|229514510|ref|ZP_04403971.1| DNA-binding response regulator [Vibrio cholerae TMA 21]
 gi|229348490|gb|EEO13448.1| DNA-binding response regulator [Vibrio cholerae TMA 21]
          Length = 192

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    +   +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 37  LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 93

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 94  SGSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 153

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE   +N +E HI  LRKKL + L    V + R +GY I+
Sbjct: 154 G-WDEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 191


>gi|223985835|ref|ZP_03635876.1| hypothetical protein HOLDEFILI_03182 [Holdemania filiformis DSM
           12042]
 gi|223962225|gb|EEF66696.1| hypothetical protein HOLDEFILI_03182 [Holdemania filiformis DSM
           12042]
          Length = 223

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVF 147
           F+ GVDD V KP   +E++ARV  I  R K  +    R E   I +  +GR   V GE  
Sbjct: 94  FELGVDDYVVKPFSPKELMARVKVILERFKTKDTEVLRFEGLQINI--EGRSVTVDGEKA 151

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L  +E  +L Y++ N+   +++ ++   ++  +D   ++  V++HI  LR  L++   F
Sbjct: 152 NLTPKEIDLLLYMVKNKNIALSRMKLLEEVWD-YDYFGDDRTVDTHIKMLRHNLKDYRKF 210

Query: 208 DPVDSKRFLGYSID 221
             + + R +GY  +
Sbjct: 211 --IVTVRGMGYKFE 222


>gi|256005030|ref|ZP_05430001.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418071|ref|ZP_06249091.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255990998|gb|EEU01109.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409473|gb|EFB39731.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939889|gb|ADU73923.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 239

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           G DD ++KP   RE +ARV   +RR     + S  R   G I +  + R+     ++  +
Sbjct: 102 GADDYISKPFSVREFVARVKVAFRRQADSFENSPKRVNVGRITIDFERREVYKDNQIIEM 161

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +E  +L+ L+ NRGK +++  +   I+G FD   E   V+ HI  LR+K+ +
Sbjct: 162 TFKEFELLKLLIMNRGKVLSRDMLLQKIWG-FDFFGETRTVDVHIRYLRQKIED 214


>gi|187479560|ref|YP_787585.1| phosphate regulon two-component response regulator [Bordetella
           avium 197N]
 gi|115424147|emb|CAJ50700.1| phosphate regulon two-component response regulator [Bordetella
           avium 197N]
          Length = 232

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           VP+I ++   + Q  +D  ++G DD + KP   +E++AR+ A+ RR   +++++  + G 
Sbjct: 77  VPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRAPQLTDDIIDVGG 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENV 189
           +++           +   +   E R+L + M +  +  +++Q+   ++G  D   VEE  
Sbjct: 137 LKLDPVTHRLSGDSQALQIGPTEFRLLHFFMTHPERVFSRSQLLDQVWG--DHVFVEERT 194

Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           V+ HI +LRK L    G D  V++ R  GY
Sbjct: 195 VDVHIRRLRKAL-EPTGHDAHVETVRGSGY 223


>gi|94971486|ref|YP_593534.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553536|gb|ABF43460.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 12/174 (6%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           E+ LQ +   + S +   ++  G   L++ R +R  S++P++ ++        +   + G
Sbjct: 35  EQGLQKALSGNYSIVVLDIMLPGISGLDVLRRLRPQSRIPVLLLTARGEDVDRIVGLELG 94

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPR 151
            DD V KP + RE+LAR+ AI RR++           G + +    R  +  G+      
Sbjct: 95  ADDYVPKPFNTRELLARIQAILRRVQGGQTPGAIVNVGDVTLDPGARTVQRGGQKLDFTS 154

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGL----FDEAVEENVVESHISKLRKKL 201
            E  +L YL+ N G  V + ++   + G     FD +     ++ HISK+R+KL
Sbjct: 155 VEFDLLRYLLENAGNVVPREELAERVLGRRFSPFDRS-----IDMHISKIRRKL 203


>gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 242

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+       
Sbjct: 71  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTGASG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|28896527|ref|NP_802877.1| two-component response regulator (CsrR/CovR) [Streptococcus
           pyogenes SSI-1]
 gi|28811781|dbj|BAC64710.1| putative two-component response regulator (CsrR/CovR)
           [Streptococcus pyogenes SSI-1]
          Length = 228

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+ R  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFCRQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|154247331|ref|YP_001418289.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161416|gb|ABS68632.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 236

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 16/173 (9%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L+L R IR  S VP+I ++   S    +   + G DD ++KP + RE+LAR+ A+ 
Sbjct: 60  GASGLDLCRDIRRTSSVPIIMLTARGSDVDRIVGLELGADDYLSKPFNPRELLARIHAVL 119

Query: 117 RRLKVSNNRAETGPIRVFS----DGRDPEVQGE---VFPLPRRERRILEYLMANRGKRVA 169
           RR++ S   A  G +  F+    D R  E+      V  L   E  +L   + +  + + 
Sbjct: 120 RRMRPSGGAATGGSLLNFAGWTLDTRRRELTNPAAVVVDLSTGEYDLLLTFLEHPQRVLT 179

Query: 170 KTQIFSAIYGL----FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + Q+  A        FD A++  V     S+LRKKL +  G + V + R  GY
Sbjct: 180 RDQLMDAAKNRTATGFDRAIDIQV-----SRLRKKLESHGGPEMVKTVRGAGY 227


>gi|90423338|ref|YP_531708.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105352|gb|ABD87389.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 229

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAI 115
           G  VLE  R  R H  +P++ ++        +  FD+G DD V KP H  E+     A +
Sbjct: 59  GISVLEAWR--RNHRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARLRALL 116

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R    + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++  
Sbjct: 117 RRSAGHAQSELTCGPVVLDTRTGRVSVNGNPVKMTSHEYRLLAYLMHHSGRVVSRTELVE 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   FD   + N +E  + ++RK    KL  D + + R LGY
Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRK----KLDVDIIQTVRGLGY 214


>gi|75762099|ref|ZP_00742004.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490417|gb|EAO53728.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 275

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 8/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 112 ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNE 171

Query: 122 SNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  G   V+ + +    V  E   L   E  +L   + +    +++ Q+   I+GL
Sbjct: 172 HKQIQYHGI--VWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL 229

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
            +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 230 -NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 270


>gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 241

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 15/149 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R    +P++ ++   S +  +    +G DD + KP    E +ARV ++ RR  V N   
Sbjct: 74  LRKTKSIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLIRRFTVLNRE- 132

Query: 127 ETGPIR----VFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              P +    +F  G       R   VQ +   L  +E  +L +L  N G+   K Q+++
Sbjct: 133 --NPCKEKSLIFKGGLLINPVERSVSVQEKEIELTNKEFDLLYFLAKNPGQVFTKKQLYT 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204
            I+   D A ++  + ++ISKLR+K+  K
Sbjct: 191 QIWQ-EDYAFDDGNMMAYISKLRRKIEKK 218


>gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 248

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 22/242 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDD-------GVSL--EGFN---SLEFEEWLQSSAREDVSA 48
           M ++  +R    +  I +  DD        V L  EG+N   + + +E LQ  +  +V  
Sbjct: 7   MLMICKERNYTMNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDL 66

Query: 49  IEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
           +   ++      LE+ + +R ++ VP++ +S        +    +G DD + KP +  E+
Sbjct: 67  MILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLEL 126

Query: 109 LARVAAIYRRLKVSN---NRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYL 160
           +ARV A+ RR    N    + E G IR+ S          +V GE   L   E  IL  L
Sbjct: 127 VARVKALLRRSSFQNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLL 186

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            +N G+  +  +IF  ++   D       V  HIS LR KL   + G   + +   +GY 
Sbjct: 187 ASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYK 245

Query: 220 ID 221
           I+
Sbjct: 246 IE 247


>gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 225

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LK 120
           R IR  S +P+I ++        +   + G DD + KP + RE++AR+ A+ RR      
Sbjct: 65  REIRTFSNIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRATNPYT 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  + G + +    R    +G+   L  +E  IL  L +N GK   K ++   ++G 
Sbjct: 125 KKKDEIKRGELYISIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
           FD   + N V  H+ KLR+K+ +
Sbjct: 184 FDFYGDTNTVTVHVRKLREKIED 206


>gi|228930116|ref|ZP_04093126.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228936367|ref|ZP_04099165.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823199|gb|EEM69033.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829615|gb|EEM75242.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 222

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 59  EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 117

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 118 CNQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 178 VWG-HNVVVNPNVVDLYIGYIRKKLKCEKKNRYIQTIHGRGYSM 220


>gi|218710599|ref|YP_002418220.1| putative response regulator [Vibrio splendidus LGP32]
 gi|218323618|emb|CAV19887.1| putative response regulator [Vibrio splendidus LGP32]
          Length = 244

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 10/154 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+  L L + +R  SQVP+I ++        +   + G DD + K  + RE+LAR+ A+ 
Sbjct: 67  GDDGLTLCQKLRLQSQVPIIMLTAVTDDADRIAGLEIGADDYITKSFNPRELLARIKALL 126

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVA 169
           RR   S+++ E      F D     ++       GEV  L   +  +L  ++ +  + ++
Sbjct: 127 RRSTFSHSQGERTL--KFMDWTFDTLKRQLKHEDGEVVSLSSADYNLLTLMLDSPNQLLS 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  I  A++G   E +E   ++  IS+LRK+LR+
Sbjct: 185 RNDIAQALWGRDAEPLERG-IDVQISRLRKQLRD 217


>gi|24215807|ref|NP_713288.1| response regulator containing a signal receiver domain and a
           DNA/RNA polymerase-binding domain [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45656882|ref|YP_000968.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24196997|gb|AAN50306.1| response regulator containing a signal receiver domain and a
           DNA/RNA polymerase-binding domain [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45600118|gb|AAS69605.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 227

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 13/144 (9%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR+ S+ P+I +S   S    +   D G DD + KP    E+LAR+     R+ + N 
Sbjct: 66  REIRSWSETPVIVLSVLASDPEKISLLDGGADDYITKPFSMGELLARI-----RVALRNK 120

Query: 125 RAETG-PIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + G PI +  +       R+ +V G    L   E   L +L+ + GK + + QI   +
Sbjct: 121 TQDPGSPIFISGNLYVDLSNRNVKVSGITVHLTPTEYIFLTFLIQHAGKVLTQEQIIRHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G F +  E   +  H++ LRKK+
Sbjct: 181 WGPFAKN-ESGSLRVHVASLRKKI 203


>gi|15614371|ref|NP_242674.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174426|dbj|BAB05527.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 231

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 72/152 (47%), Gaps = 14/152 (9%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR K 
Sbjct: 64  EVARQIREQHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFAPIELVARVNAQLRRFKK 123

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ-I 173
            N          E G + +  + R   + GE   L  +E  IL YL+A+  K+V   + I
Sbjct: 124 LNQPKPDRITTLEFGGLVIAPEQRKVTLYGETIELTPKEFEIL-YLLASHPKKVYSVENI 182

Query: 174 FSAIYGLFDEAVEE--NVVESHISKLRKKLRN 203
           F  ++G   EA  E  N V  H+  LRKKL++
Sbjct: 183 FHQVWG---EAYFEGGNTVMVHVRTLRKKLKD 211


>gi|308084098|gb|ADO13165.1| QseB [Edwardsiella tarda ATCC 15947]
          Length = 219

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 23/210 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEK 59
           +LI+D  L+ DG  A     G+S  GF    F +  Q  A  D +  +A ++     G  
Sbjct: 4   LLIEDDRLIGDGIKA-----GLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLPGID 58

Query: 60  VLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            LE+ R  R   H++ P++ ++   +L+  +     G DD + KP    E+ AR+ A+ R
Sbjct: 59  GLEILRRWREAGHAE-PVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIR 117

Query: 118 R------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R       ++S+      P+ + +      + G    L  +E  +LE L+ N G+ + ++
Sbjct: 118 RNHGQTQTQLSHGAVTLDPLSLTA-----TLDGAPLLLKPKEFALLELLLRNAGRVLPRS 172

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            I   +Y  ++  V  N VE HI  LR+KL
Sbjct: 173 LIEEKLYN-WEGDVSSNAVEVHIHHLRRKL 201


>gi|297154563|gb|ADI04275.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 13/206 (6%)

Query: 23  GVSLEGFNSLEFEE------WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPL 75
           G++ EG+ S++         W+  +    +  ++  L G  G KV    R  R ++  P+
Sbjct: 19  GLTAEGY-SVDLAHDGRQGLWMARTGEYVLIVLDLMLPGLNGYKVCAQLR--RENNATPI 75

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVF 134
           + ++         +  D+G DD + KP  +  ++AR+ A+ RR   V+      G + + 
Sbjct: 76  LVLTAKDGEWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAATVAPPVLAVGDLSLD 135

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
             GR     G    L  RE  +LE L    G+ V+KT +    +   DEA + N+VE+ +
Sbjct: 136 VAGRVCRRAGARVELTPREFAVLELLARRAGQAVSKTDLL--YHAWPDEAWDPNLVEARV 193

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S LRKK+        + + R  GY +
Sbjct: 194 SALRKKVDAAFHRQSLQTVRGTGYRL 219


>gi|293399743|ref|ZP_06643889.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306143|gb|EFE47386.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 224

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +RA+  QVP++ ++   S+Q  +   D+G DD + KP    E+LAR+  + R  
Sbjct: 60  LEVLQTLRANGKQVPVLMLTAKDSIQDRVKGLDAGADDYLVKPFAFDELLARIRVLLR-- 117

Query: 120 KVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           K SN      +   + ++ +        +   L  +E  +L Y+M N G  +++ ++   
Sbjct: 118 KPSNRHTGFYQVDDLVLYPNTHKVLRADKEIHLSAKEFSLLRYMMQNTGIVLSREKLEQH 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+  +D + E NV++ +I  LRKK+        + + R +GY +
Sbjct: 178 IWN-YDYSGESNVIDVYIRYLRKKIDEGHSHKLLHTIRGVGYVL 220


>gi|262403145|ref|ZP_06079705.1| DNA-binding response regulator [Vibrio sp. RC586]
 gi|262350644|gb|EEY99777.1| DNA-binding response regulator [Vibrio sp. RC586]
          Length = 218

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    +   +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 63  LRQIRRAGYSLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 119

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 120 TGSAEALISAGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE   +N +E HI  LRKKL + L    + + R +GY I+
Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKKLPDNL----IRNVRGVGYMIE 217


>gi|229030407|ref|ZP_04186448.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
 gi|228730932|gb|EEL81871.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
          Length = 143

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 7/133 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
           FD G+DD + KP     ++ RV A+ RR   K  NN      +R+  D     V      
Sbjct: 15  FDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNVNNHLVFKEVRIDVDAYRIYVNDVEIL 74

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L  +E  IL+ L  N  K + +  I   ++G +D   E  ++++HI  LRK    KL   
Sbjct: 75  LTTKEFEILQLLFQNERKVLTRENIVEKVWG-YDYFGETRIIDTHIKNLRK----KLAIP 129

Query: 209 PVDSKRFLGYSID 221
            + + + +GY +D
Sbjct: 130 YIKTIKGIGYKVD 142


>gi|170721590|ref|YP_001749278.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169759593|gb|ACA72909.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 226

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGP 130
            P++ IS    +   +    +G DD + KP    E+ ARV  + RR  + ++  R +   
Sbjct: 74  TPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPMTQTRLQVAD 133

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
           +++     +     +   L   E ++LEYLM + G+ + +  IF  ++G  FD     N+
Sbjct: 134 LQLDLISHEARRGDQTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWGYHFDPGT--NL 191

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ HI +LRKK+ +      + + R  GY+I
Sbjct: 192 IDVHIGRLRKKIDSPGQSPLIRTVRGSGYAI 222


>gi|82750361|ref|YP_416102.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|123547752|sp|Q2YSS2|GRAR_STAAB RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|82655892|emb|CAI80296.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|298693989|gb|ADI97211.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302332368|gb|ADL22561.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|323439125|gb|EGA96854.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323441886|gb|EGA99525.1| two-component response regulator [Staphylococcus aureus O46]
          Length = 224

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 7/159 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+     
Sbjct: 64  RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  T    +    +D   +G +   L + E  ILE L+  + + V++  I +A++  
Sbjct: 124 EEKRTLTWQDAIIDLSKDSIQKGDDTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DEA V +N +  ++++LRKKL        +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGY 220


>gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional
           regulatory protein phoP
 gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis]
 gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 240

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 15/141 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----------GPIRVFSDGRDPEV 142
           G DD + KP   RE+ ARV AI RR +++   +E            G +++  D  +   
Sbjct: 96  GADDYMTKPFSPREVNARVKAILRRSEIAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYF 155

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +     L  +E  +L YL  ++G+ + +  + SA++  +D A +  +V+ HIS LR K+ 
Sbjct: 156 KESQLELTPKEFELLLYLGRHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIE 214

Query: 203 NKLGFDPVDSK--RFLGYSID 221
           N     P+  K  R LGY ++
Sbjct: 215 NNTK-KPIYIKTIRGLGYKLE 234


>gi|311106506|ref|YP_003979359.1| response regulator 10 [Achromobacter xylosoxidans A8]
 gi|310761195|gb|ADP16644.1| response regulator 10 [Achromobacter xylosoxidans A8]
          Length = 233

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 19/182 (10%)

Query: 48  AIEAF-----------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           A+EAF           L+  G   L++ R +RA S  P++ ++        +   +SG D
Sbjct: 37  AVEAFRRHDPAITILDLMLPGRDGLQVCRDLRAFSSAPILMLTAREDDLDQILGLESGAD 96

Query: 97  DVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           D V KP+  R +LAR+ A+ RR   L     R E GP+ +    R     G    L   E
Sbjct: 97  DYVIKPVEPRVLLARIRALLRRHSQLDEPPERLEFGPLVIDRRTRAVVHAGSEVDLTTME 156

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             +L  L +  G+ + +  + +A+ G     +E N ++  +     KLR KL  DP D  
Sbjct: 157 FEMLWALASQAGQVLTRDDLLNAVRG-----IEFNGLDRSVDVCVSKLRRKLDDDPRDPA 211

Query: 214 RF 215
           R 
Sbjct: 212 RI 213


>gi|309777246|ref|ZP_07672209.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915116|gb|EFP60893.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 226

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 3/131 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           ++P+I I+   S+Q  +     G DD + KP    E+LARV  + RR   S        +
Sbjct: 75  EIPVIFITAKGSVQERVKGLRMGADDYLVKPFAIDELLARVDNVLRRYHKSMQEIHVLDV 134

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN-VV 190
            + +  R  + +G V PL ++E  +L YL+ N+   + +  ++  ++   +E  E+   +
Sbjct: 135 TIHTATRVVKKKGTVIPLTKKEFDLLLYLVQNKNIALYRDTMYEKLWR--EEDYEQTRTL 192

Query: 191 ESHISKLRKKL 201
           + HI +LRKKL
Sbjct: 193 DLHIQRLRKKL 203


>gi|302380400|ref|ZP_07268869.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311804|gb|EFK93816.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 218

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/228 (19%), Positives = 100/228 (43%), Gaps = 22/228 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      + G          ++ +     ++ +S  E   I      +
Sbjct: 3   LLVVEDDQMIREGICEFLSEFG----------YKNYQAEDGKQAISIFENNEINLAILDI 52

Query: 62  ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           +LP I        IR  S +P I ++ +   +  ++ F S  D  + KP     +  RV 
Sbjct: 53  QLPYINGLDVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVLKVRVE 112

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++ ++   +N         V       ++ G+   +  +E  IL+Y++ N G+ + + QI
Sbjct: 113 SLIKKHYGNNETFNYKNTEVNFTSYTAKLNGKKVDVNAKELEILKYMIENEGQALTRMQI 172

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +++   DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 173 IDSVWKETDEIPFDRVIDVYIKELRKKLE----LDCIVTIRNVGYKLE 216


>gi|255523524|ref|ZP_05390492.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512781|gb|EET89053.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 232

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 13/207 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + D   +    DG   E F + E +  L++  R +   I   L+       E
Sbjct: 8   LVIDDENKIVDVIRSYLERDGA--EVFEAFEGKNALETFERVNPDLIILDLMLPDMTGEE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S+VP+I ++     ++ +     G DD V KP   RE++AR+ A+ RR  VS
Sbjct: 66  ICKAIRKKSRVPIIMLTAKIDEKSVISGLHIGADDYVTKPFSPRELMARIFALLRR--VS 123

Query: 123 NNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   I   ++G        R+   +GE   L   E ++L  L+    K   + ++ 
Sbjct: 124 EEAVPLSDIVSLNNGDLVVDVLKREVRKKGENINLTITEYKVLMALLKYPQKTFTREELI 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
           +A+ G  D    + V+++H+  LR+KL
Sbjct: 184 NAVLG-EDYDGYDRVIDTHVKNLRQKL 209


>gi|193213480|ref|YP_001999433.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193086957|gb|ACF12233.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 220

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 15/171 (8%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   LEL   +R   S +P+I I+    L   +   DSG DD + KP    E+LAR+ A+
Sbjct: 56  GRGGLELLAGLRQQGSSIPVIIITARDGLSERIAGLDSGADDYLVKPFDLDELLARLRAV 115

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAK 170
            RR         +G I       DP             L  RE  +L  L+   G+ +++
Sbjct: 116 IRR----QGGQASGLIGNGQITLDPATHTAFCGESREVLSSREFAVLHALLLQPGRILSR 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   +YG +DE VE N ++  I +LRK    KLG   + + R  G+ ++
Sbjct: 172 SALEERVYG-WDEEVESNAIDYLIHQLRK----KLGAASIKNIRGAGWMVE 217


>gi|6689352|emb|CAB65451.1| VicR protein [Streptococcus pyogenes]
          Length = 239

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 64  LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 123

Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                V+   A +G        +++  D    +  G+   L  RE  +L +L  + G+ +
Sbjct: 124 TIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVM 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 184 TREHLLEIVWG-YDYFGDVRTVDVTVRRLREKIED 217


>gi|15673729|ref|NP_267903.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724767|gb|AAK05845.1|AE006404_12 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407232|gb|ADZ64303.1| two-component system response regulator [Lactococcus lactis subsp.
           lactis CV56]
          Length = 223

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 17/164 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  SQ+P+I IS        +   + G DD V KP     + A++ A+ RR        
Sbjct: 66  LRKLSQIPIIFISSASDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIE 125

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+ +        +    +G   E++     L   E +IL  L    G+ V K +I   +
Sbjct: 126 KLEFAGYVLSENTLISTQEGEREEIE-----LTSSENKILTLLFRGNGEVVTKEKILQEL 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +   DE ++ N +   +++LRKKL  ++GFD  + +KR  GY++
Sbjct: 181 WQT-DEFIDANTLNVKMTRLRKKL-GEIGFDKHIMTKRGSGYAL 222


>gi|148548249|ref|YP_001268351.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148512307|gb|ABQ79167.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 220

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 15/167 (8%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL R +RA    +P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  IELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             S  RA+   I       DP  Q     G    L  +E  +L  L+A+ GK   + ++ 
Sbjct: 119 --SVGRAKV-LIEHAGVSLDPTTQQVHYNGVDVVLTPKEYVLLHELLAHPGKVFTRERLT 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +YG +DE  E N +E +I  LRKKL N L    + + R +GY ++
Sbjct: 176 QLLYG-WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217


>gi|116629368|ref|YP_814540.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|282850958|ref|ZP_06260332.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311110978|ref|ZP_07712375.1| DNA-binding response regulator DltR [Lactobacillus gasseri MV-22]
 gi|116094950|gb|ABJ60102.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|282557910|gb|EFB63498.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311066132|gb|EFQ46472.1| DNA-binding response regulator DltR [Lactobacillus gasseri MV-22]
          Length = 221

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            DSG DD + KP   +E+LAR+ +  RR  + + N  E G +   +      V      L
Sbjct: 91  LDSGADDYLTKPFSLKELLARLRSKERRDDQYTPNEVEVGDL-ALNVSEQELVSHNSIRL 149

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +E ++L YLM N GK  + + + + ++   D+A EE VV  +IS LR+KL++
Sbjct: 150 GSKETQLLNYLMLNEGKEFSTSDLLAHVWKDEDDANEE-VVWIYISYLRQKLQS 202


>gi|314934896|ref|ZP_07842255.1| DNA-binding response regulator KdpE [Staphylococcus caprae C87]
 gi|313652826|gb|EFS16589.1| DNA-binding response regulator KdpE [Staphylococcus caprae C87]
          Length = 233

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYR 117
           L L + +R     P+I IS     +T +   D G +D + KP +  E+ AR+     + +
Sbjct: 62  LSLIKRLRECVDTPIIVISARTEEETIVKALDYGANDYMTKPFNIDELQARIRVALRVSK 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R     N  E GP+ +   G    + G+   L   E ++LE L  + GK +    +  A+
Sbjct: 122 RPDTMQNNFENGPLIIDFSGNSVYMMGQAIHLTPYEFQLLEILSQHVGKVLTYQVLLKAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN 203
           +G  ++  + + +  H++ LRKKL N
Sbjct: 182 FGYVNKC-DMSSLRVHMASLRKKLNN 206


>gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
 gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
          Length = 228

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 10/147 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R     +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173
           K   + AE+  +R FSD     V  EV        L R E  +LE L+AN  + + +++I
Sbjct: 120 K-PEDAAESMAMR-FSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200
              ++G FD     N +E ++  LR+K
Sbjct: 178 LEEVWG-FDFPTSGNALEVYVGYLRRK 203


>gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 242

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++      
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGAPG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 242

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  +    
Sbjct: 71  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGTTG 130

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G I++ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|260596190|ref|YP_003208761.1| DNA-binding transcriptional regulator BasR [Cronobacter turicensis
           z3032]
 gi|260215367|emb|CBA27379.1| Transcriptional regulatory protein pmrA [Cronobacter turicensis
           z3032]
          Length = 220

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D  L+++G     G++G +L+   N+ E +  LQS     +          G  +
Sbjct: 3   LLIVEDDLLLQEGLALALGNEGYALDCAANATEGDALLQSGEYSLIILDLGLPDKDGATL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R  R+    P++ ++   +L+  +   D+G DD + KP    E+ AR  A+ RR +
Sbjct: 63  LSQWR--RSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  +   I +    +   +QG    +  +E  +L  LM   G+ V +  +   IY 
Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGLPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+    N +E HI  LR+    KLG   + + R +GY ++
Sbjct: 181 WQDDP-SSNTLEVHIHNLRR----KLGKTRIRTIRGVGYRLE 217


>gi|255321627|ref|ZP_05362784.1| transcriptional activator protein CopR [Campylobacter showae
           RM3277]
 gi|255301275|gb|EET80535.1| transcriptional activator protein CopR [Campylobacter showae
           RM3277]
          Length = 220

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 9/219 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++ +   A     G    G  S +    L   +  D+   +  +IG G     
Sbjct: 5   LIVEDENMLLEMMCAYLRAQGYETAGAKSYDDALNLAYESNFDLWIFDVKIIG-GSGFAL 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +  A    P I  +   +L      F SG DD + KP   +E+  RV  + +R  V 
Sbjct: 64  LGELRNAGKNTPCIFTTSLNTLDDVQTSFTSGCDDYIKKPFELKELHLRVQNLLKRTFVH 123

Query: 123 NNRA--ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           N       G    F   +      G+   +P+++ R+L  L+ N+ K +++ +I+S I+ 
Sbjct: 124 NKNELINLGENLGFDMNQGLLFCGGKAVSMPKKQSRLLALLLKNQDKFLSREEIYSQIWD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +DE+  E  +  +I++LRK     LG + + S   LGY
Sbjct: 184 -YDESPSELSLRVYIAELRK----ILGKERIVSASKLGY 217


>gi|212637675|ref|YP_002314200.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212559159|gb|ACJ31613.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 225

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R 
Sbjct: 60  LKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRG 119

Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +      +   GP+ +    R   + G+   L  +E ++L+YLM +  + +++T +F A+
Sbjct: 120 ESQPMVTDLSVGPLSIELLTRKVTLDGQEILLQPKEFQLLKYLMEHENQVISRTLLFEAV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   FD     NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 180 WDYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 246

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++      
Sbjct: 75  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGVPG 134

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 135 IPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 194

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 195 YTPERHVDTRVVDVHISRLRAKLED 219


>gi|84622759|ref|YP_450131.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578201|ref|YP_001915130.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|84366699|dbj|BAE67857.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522653|gb|ACD60598.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 225

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G   +E+ R +R  A  Q P++ ++   SL   L  FDSG DD + KP   +E+  R+ A
Sbjct: 56  GMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNA 115

Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR K  + R  ETG +    D  +   +G++  L     +IL+ LM      V + ++
Sbjct: 116 LSRRGKGVHTRVLETGDLEYNLDTLEVRRRGKLLQLNPTALKILQALMEASPAVVTRQEL 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G  +E  + + +  HI  LR  +        + ++  +GY I
Sbjct: 176 ETRVWG--EELPDSDSLRVHIHGLRAVVDKPFDVAMIQTRHGIGYRI 220


>gi|315453463|ref|YP_004073733.1| two-component regulator [Helicobacter felis ATCC 49179]
 gi|315132515|emb|CBY83143.1| two-component regulator [Helicobacter felis ATCC 49179]
          Length = 226

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 14/205 (6%)

Query: 19  FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78
            G+ G  ++   +LE  E+  S    D+  +    +  G  +  +P     H  +  I +
Sbjct: 20  LGEKGFQVDTAENLEDGEYYISIRNYDLILV-GLELSDGSGLNLIPYAKSKHPTIVSIML 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI-----RV 133
           ++  S +  +  F  GVDD + KP     + AR+ A  R    S    E   I     ++
Sbjct: 79  TNKASSEQEIKAFKEGVDDFIVKPFDFGVLAARIEARLRFWGSSIIEIEDLVINPDEEKI 138

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
              G++ EV+G+ F        +L +L  +R + V+K Q+  AI+    E V  NV+E  
Sbjct: 139 IYKGKEIEVKGKPF-------EVLTHLARHRDQIVSKEQLLDAIWEE-PELVTPNVIEVA 190

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGY 218
           I+++R+K+   LG   V++ R  GY
Sbjct: 191 INQIRQKMDKPLGISTVETVRRRGY 215


>gi|239815964|ref|YP_002944874.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239802541|gb|ACS19608.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 242

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 24/215 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L  +GY      DG +  G   LE   W          A+   L+  G   LE+ R  RA
Sbjct: 24  LRDEGYAIEHAADGHT--GLRELERGHW---------DALVLDLMLPGVDGLEICRRARA 72

Query: 70  HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126
            ++  P+I IS   S    +   + G DD + KP    E++ARV A+ RR      N R 
Sbjct: 73  MARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRTDALARNARL 132

Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           E+G + + +   DP      V   +  L  RE  +L +   + GK  ++  + + ++G +
Sbjct: 133 ESGSLTLGNLDIDPVAREVRVDARLIELTPREFDLLYFFARHPGKVFSRLDLLNQVWG-Y 191

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
                E+ V +HI++LR K+      DP + +R L
Sbjct: 192 QHDGYEHTVNTHINRLRTKVEA----DPAEPRRIL 222


>gi|187929100|ref|YP_001899587.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241663308|ref|YP_002981668.1| two component transcriptional regulator PhoB [Ralstonia pickettii
           12D]
 gi|309782477|ref|ZP_07677201.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ralstonia sp. 5_7_47FAA]
 gi|187725990|gb|ACD27155.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240865335|gb|ACS62996.1| two component transcriptional regulator PhoB, winged helix family
           [Ralstonia pickettii 12D]
 gi|308918814|gb|EFP64487.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ralstonia sp. 5_7_47FAA]
          Length = 237

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 11/161 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-------VSNN 124
           Q+P+I ++     Q  +   DSG DD V KP   +E+LAR+ A+ RR         V+ N
Sbjct: 76  QIPIIMLTARSEEQDKIMGLDSGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135

Query: 125 RAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             +  P        + E +  +   L   E R+L +LM +  +  +++Q+   ++G  D 
Sbjct: 136 GLKLDPATHRVTATNVEAENPIKLDLGPTEFRLLHFLMTHPERVHSRSQLLDQVWG--DH 193

Query: 184 A-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             VEE  V+ HI +LR  L      + +++ R  GY +  N
Sbjct: 194 VFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234


>gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Rv]
 gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Ra]
 gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis F11]
 gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis H37Ra]
 gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis GM 1503]
 gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210]
 gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207]
 gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506]
 gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475]
 gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium
           tuberculosis H37Ra]
 gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis F11]
 gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis W-148]
 gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 230

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 10/147 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R     +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173
           K   + AE+  +R FSD     V  EV        L R E  +LE L+AN  + + +++I
Sbjct: 122 K-PEDAAESMAMR-FSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200
              ++G FD     N +E ++  LR+K
Sbjct: 180 LEEVWG-FDFPTSGNALEVYVGYLRRK 205


>gi|310643634|ref|YP_003948392.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309248584|gb|ADO58151.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa SC2]
          Length = 231

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 11/162 (6%)

Query: 49  IEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
           I   L+  G+   EL   IR  + VP++ IS+   L T +   D G DD + KP   RE+
Sbjct: 50  IVTALMFSGKVECELISHIRQFTTVPVLVISNNTLLNTRIKALDDGADDFLCKPFSLREL 109

Query: 109 LARVAAIYRRLKVSNNRAETGPI-------RVF-SDGRDP-EVQGEVFPLPRRERRILEY 159
            AR+ A+ RR   SN   ET  I       RV+ +D R    V  +   +   E  I++ 
Sbjct: 110 NARIKALLRR-SGSNMLTETPTITQKLKKVRVWVNDYRHSLLVDDQEIEVTHIEFSIIKE 168

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  N GK   ++++   + G  D A  +  ++ HIS LRKK+
Sbjct: 169 MSCNPGKVFTRSELMDRVKG-GDGAYLDRTIDVHISSLRKKI 209


>gi|156933326|ref|YP_001437242.1| DNA-binding transcriptional regulator BaeR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156531580|gb|ABU76406.1| hypothetical protein ESA_01139 [Cronobacter sakazakii ATCC BAA-894]
          Length = 240

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 6/153 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSEVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARV 121

Query: 113 AAIYRRLKVSNN---RAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K   +   +    P+ +  +GR     + +   L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRDLQAQDAQSPL-IIDEGRFQASWRQKPLDLTPAEFRLLKTLSGEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator
           [Janthinobacterium sp. Marseille]
 gi|151280237|gb|ABR88647.1| phosphate regulon two-component response regulator
           [Janthinobacterium sp. Marseille]
          Length = 229

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 7/167 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++L   R  R  +++P+I ++     +  +   D+G DD V KP   RE+ AR+ A+ 
Sbjct: 64  GLRLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALL 123

Query: 117 RRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR    +++     G I +        +  E   +   E ++L++ +A+  +  +++Q+ 
Sbjct: 124 RRKTPEHSQTLMTAGNISLDPVSCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLL 183

Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G  D  V EE  V+ H+ +LRK L++      + + R +GY +
Sbjct: 184 DKVWG--DHVVIEERTVDVHVLRLRKALKDAEHL--IKTVRSVGYML 226


>gi|126740090|ref|ZP_01755780.1| probable two-component response regulator [Roseobacter sp.
           SK209-2-6]
 gi|126718909|gb|EBA15621.1| probable two-component response regulator [Roseobacter sp.
           SK209-2-6]
          Length = 242

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 23/238 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KG 57
           +  ++DD   V+D   AL  D      GF ++   +     A  D   +   LI    +G
Sbjct: 9   LIAIVDDDENVRDTLSALVRD-----SGFGAVCCPDIASFMALGDPPQVNLALIDLRLRG 63

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E  L L   IR   ++P++ ++        +   ++G DD + KP + RE++AR+ A+ R
Sbjct: 64  ESGLTLAIHIRERYEIPIVMLTGVGDEIDKIIGLETGADDYLIKPFNPRELVARIRAVLR 123

Query: 118 RLKVSNNRA--ETGPIRVFSDGRDPEVQ--------GEVFPLPRRERRILEYLMANRGKR 167
           R    + +    +GP   F D R  +VQ        GE  PL   E R+LEY + N  + 
Sbjct: 124 RYGHGSAKPGIASGPGISFRDMR-VDVQSRRLLDADGEEVPLTNAEYRLLEYFVRNPNRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSIDWN 223
           + + ++ + +    +  V+   ++  I +LR+K+   +   PV   ++R  GY  D  
Sbjct: 183 IPRPELLTELGSDMERYVDRT-IDVLILRLRRKI-ELVPSKPVHLLTRRTQGYIFDLG 238


>gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 242

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+       
Sbjct: 71  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTGASG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 242

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+       
Sbjct: 71  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTGASG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 245

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR        
Sbjct: 75  LRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRADRDTASG 134

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G +++ ++ R    +GE   L   E  +LE +++  G+  ++++I   ++G
Sbjct: 135 IPSSGVIHVGDLKIDTNKRQVYKRGERIRLTGMEFSLLELVVSRSGEPFSRSEILQEVWG 194

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 195 YTPERHVDTRVVDVHISRLRSKLED 219


>gi|23098286|ref|NP_691752.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776511|dbj|BAC12787.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 227

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 10/144 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR+HS VP+I +S        +     G DD V KP H   +LA++ AI RR     +
Sbjct: 65  RTIRSHSDVPIIFLSSRDHPMDMVMAMQLGADDYVQKPFHFEVLLAKIQAILRR-TYRYS 123

Query: 125 RAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +     I++++         D + +G    L + E  IL  L+  + + V++ ++  A++
Sbjct: 124 QTTNVDIKIWNQATINFSKCDIQYKGGSVELSKNESSILRILVDQKNQIVSRDELIRALW 183

Query: 179 GLFDEA-VEENVVESHISKLRKKL 201
              DE  + +N +  ++++LRK L
Sbjct: 184 D--DERFISDNTLTVNVNRLRKSL 205


>gi|548535|sp|P36556|BASR_SALTY RecName: Full=Transcriptional regulatory protein BasR
 gi|295211|gb|AAA72365.1| PmrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 222

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L RI +    +P++ ++ + +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRIRQKKYTLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHNN 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L V N     G  + + DG++         L  +E  +L  LM   G  V +  +
Sbjct: 122 QGESELTVGNLTLNIGRHQAWRDGQE-------LTLTPKEYALLSRLMLKAGSPVHREIL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ IY  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 175 YNDIYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|322373203|ref|ZP_08047739.1| DNA-binding response regulator [Streptococcus sp. C150]
 gi|321278245|gb|EFX55314.1| DNA-binding response regulator [Streptococcus sp. C150]
          Length = 226

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP     +LA++  + RR        
Sbjct: 67  IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + +     D   QGEV  L + E +IL+ L    G  V++  +   ++   D 
Sbjct: 127 SLLEYRGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERAGNIVSREDLMKELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      D +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGL 222


>gi|313898659|ref|ZP_07832194.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956543|gb|EFR38176.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 236

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 25/174 (14%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R     P+I +S        +   + G DD + KP    E+LARV +  RR +      
Sbjct: 68  VRKDYDFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRRYEQILMLK 127

Query: 121 ----VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                S NR E     G + + S  ++  V  ++  L  +E  ILE LM + G+  +  Q
Sbjct: 128 EHAVSSVNREEEIYSIGALELNSTTKEVRVDNQIVKLRPKEFMILELLMKHAGRVFSAQQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
           I+ A++   +EA+    V  HI    +KLR K+  DP   +       +GY I+
Sbjct: 188 IYEAVWN--EEAINTETVMVHI----RKLREKIELDPKHPRYLKVVWGIGYKIE 235


>gi|307068695|ref|YP_003877661.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|306410232|gb|ADM85659.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
          Length = 143

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK----------VSNNRAETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LARV A+ RR K          ++++    G ++V+ +  +    
Sbjct: 4   GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 63

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  L  +E  +L YLM +    + + ++   I+G +D   E  +V+ HI KLR+K+ +
Sbjct: 64  NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 122


>gi|299537386|ref|ZP_07050684.1| YxdJ [Lysinibacillus fusiformis ZC1]
 gi|298727178|gb|EFI67755.1| YxdJ [Lysinibacillus fusiformis ZC1]
          Length = 234

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 9/161 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R +R H+  P+I IS        +   ++G DD + KP ++  +LA++ +  RR      
Sbjct: 67  RQLRQHTTCPIIFISARSGEMDQIFALENGGDDFITKPFNYEIVLAKIRSHLRRTYGEYA 126

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      + G + +  +  +        PL ++E  ILE LM N  K V++ Q+   ++
Sbjct: 127 ARQEERTIKQGQLVLHLERMELHKNDLEIPLQKKECIILELLMGNAPKVVSREQLLEELW 186

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D+A V+EN +  +++++RKKL +      +++ R  GY
Sbjct: 187 D--DQAFVDENTLNVNMTRVRKKLADYHISSTIETVRGAGY 225


>gi|257439473|ref|ZP_05615228.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198132|gb|EEU96416.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 241

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 13/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR    N++A
Sbjct: 78  IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNHQA 137

Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
                 +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+  ++G 
Sbjct: 138 GAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 197

Query: 180 --LFDEAVEENVVESHISKLRKKL 201
              +D++   N++ + IS+LRKKL
Sbjct: 198 EYFYDDS---NIM-AIISRLRKKL 217


>gi|261415718|ref|YP_003249401.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372174|gb|ACX74919.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326913|gb|ADL26114.1| DNA-binding response regulator [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 242

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122
           +I      +P+I +S   S    ++    G DD + KP     +LAR+ A+ RR + +  
Sbjct: 72  KIREKDKSLPIIILSAKNSDDDIINGLKFGADDYIPKPFSVPMLLARIEAVLRRSRQTME 131

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +   G +RV           E     R+E  ILEYL  NR   + ++++   ++G  
Sbjct: 132 NEGKLVAGNLRVNFREYTGVRGTEELAFTRKEIEILEYLWNNRDHAIPRSELLRKVWGYE 191

Query: 182 D-EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + E+V+   V+ HI+KLRKK+ +    DP   K  + +
Sbjct: 192 NAESVDTRTVDIHITKLRKKIED----DPAHPKLLVTF 225


>gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
 gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
          Length = 237

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 9/151 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ R IR  S VP+I ++   S    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 64  LEVCREIRKQSAVPVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRNL 123

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +V+ N    G + +  D       GE   L  RE  +L YL  + G+ + +  
Sbjct: 124 VKEPEPQEVNKNEIVVGDLVIHQDAYIISKHGEEIELTHREFELLHYLARHIGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++  +D   +   V+  I +LR+K+ +
Sbjct: 184 LLETVWD-YDYFGDVRTVDVTIRRLREKIED 213


>gi|213968576|ref|ZP_03396718.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301385563|ref|ZP_07233981.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060389|ref|ZP_07251930.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302132437|ref|ZP_07258427.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926509|gb|EEB60062.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|331017510|gb|EGH97566.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 220

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 24/218 (11%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL  +GY   + +DG+S    ++L  E +        +  ++ F         +L R +R
Sbjct: 19  ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           A    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR   S  RA 
Sbjct: 68  AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   I +    +    QG    +   E ++L  LM   GK V + ++ + +YG + +
Sbjct: 125 PLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE N +E  I  LRKKL  +L    + + R +GY ++
Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217


>gi|188583782|ref|YP_001927227.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179347280|gb|ACB82692.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 224

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A   +P++ ++     +  ++  D+G DD + KP    E++AR+ AI RR    
Sbjct: 63  LRRLRGADVALPVLILTARDGWRERVEGIDAGADDYLVKPFRMEELVARLRAILRRTAGH 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + + +  R   V G    L   E R+L +L+  +G+ VA  ++   ++G  
Sbjct: 123 ASPVLRAGAVELDTRTRAVSVAGRETDLTALEYRLLAFLLHRQGQVVAAGELLDHLHG-S 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E N +E+ +++LR+    KLG   ++++R  GY +
Sbjct: 182 DSDREANALEALLTRLRR----KLGPGIIETRRGHGYLV 216


>gi|167033602|ref|YP_001668833.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860090|gb|ABY98497.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 221

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 19/160 (11%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A + VPL+ I+    L   +   D G DD + KP    E+LAR+ A+ RR K      E 
Sbjct: 69  ADNPVPLLIITARAELDDRVRGLDGGADDFLQKPFEMAELLARMRAVMRR-KGGRATPEL 127

Query: 129 GPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           G   V  D           P VQ     L  RE  +L+ L+   G  +++ ++   +YG 
Sbjct: 128 GNGTVSLDLVSKCARVMAQPPVQ-----LSNREFALLQALLIRPGAILSRAELEDRLYGW 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E VE N VE  I  LR+    KLG D + + R LG+ +
Sbjct: 183 GNE-VESNAVEFLIHALRR----KLGKDVIRNIRGLGWMV 217


>gi|330983218|gb|EGH81321.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 148

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 12/135 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146
            D+G DD + KP    E+ ARV A+ RR   S  RA    E   I +    +    +G  
Sbjct: 19  LDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQPLLEHAGISLDPASQQVSFKGSE 75

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            P+   E ++L  LM   GK V + ++ + +YG + + VE N +E  I  LRKKL  +L 
Sbjct: 76  VPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQDKVESNTLEVLIHNLRKKLSTEL- 133

Query: 207 FDPVDSKRFLGYSID 221
              + + R +GY ++
Sbjct: 134 ---IRTVRGVGYLLE 145


>gi|325922833|ref|ZP_08184560.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325546690|gb|EGD17817.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 238

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 19/172 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        +   D+G +D V KP   +E++AR+ A+ R+   
Sbjct: 71  EVLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 130

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   E+    VF DG        R+  + GE  PL R+E  +L  L+ + G+ V + Q+
Sbjct: 131 GSTVEES----VFDDGRLHIHLGLREVTLAGEAVPLSRKEYALLALLLKHAGRVVTQPQL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYS 219
              ++G   E  + + +   + KLR+KL +          +P    RF+G +
Sbjct: 187 LREVWGPTHEE-DTHYLRILVGKLRQKLHDDAADPQYIVTEPGVGLRFIGVT 237


>gi|300697799|ref|YP_003748460.1| transcriptional regulator [Ralstonia solanacearum CFBP2957]
 gi|299074523|emb|CBJ54074.1| Transcriptional regulatory protein, probable baeR protein, response
           regulator for mdtABCD and acrD [Ralstonia solanacearum
           CFBP2957]
          Length = 222

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 3/170 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G+  LE+ R +RA S +P++ ++        L   + G DD + KP   RE++AR+
Sbjct: 54  LMLPGKDGLEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARI 113

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I RR++    + E+  +++ +      ++G+   L   E R+L  L    G+ +++  
Sbjct: 114 KTILRRVQRGGAQPES-LLQIDNAAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRAN 172

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   IY      V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 173 LLEQIYD-DHRIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 221


>gi|294500029|ref|YP_003563729.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349966|gb|ADE70295.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 224

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 97/203 (47%), Gaps = 8/203 (3%)

Query: 24  VSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80
           + LEG+   E E+  ++S   A++ +      ++   +   E+   IR++   P+I ++ 
Sbjct: 21  LQLEGYVVHEAEDGEEASGLLAKQHIHLAVVDIMMPHKDGYEVCEEIRSYYDFPIILLTA 80

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140
              L+     F +G DD V KP   +E++ R+ A+ RR +V N +        F D +  
Sbjct: 81  KDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLRRYEVVNEKMIVLN-NTFIDRKSY 139

Query: 141 EVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
           EV   G +  LP +E  +L  L +  G+   + ++   I+G  D   +   ++ H+ +LR
Sbjct: 140 EVHCSGRLLILPMKEFELLAQLASYPGRIFTREELIHLIWGA-DFNGDNRTIDVHVKRLR 198

Query: 199 KKLRNKLGFDPVDSKRFLGYSID 221
           ++  +   F  + + R +GY ++
Sbjct: 199 ERFEHTDDF-VITTVRGVGYKLE 220


>gi|290352215|dbj|BAI78818.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+R   +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRLQDI 122

Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     G  R   +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 247

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++      
Sbjct: 75  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGAPG 134

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 135 IPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 194

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 195 YTPERHVDTRVVDVHISRLRAKLED 219


>gi|156934385|ref|YP_001438301.1| DNA-binding transcriptional regulator PhoP [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156532639|gb|ABU77465.1| hypothetical protein ESA_02216 [Cronobacter sakazakii ATCC BAA-894]
          Length = 223

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++  +    DV+ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLSELGHQVDAAEDAKEADYYLNEHLPDVAIVDLGL--PDEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R  RA    +P++ ++     Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRASEISLPVLVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVVARMQALLRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P  V    R+  +   +  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISMPPFVVDLSRREVTINDNLIRLTAFEYTIMETLIRNAGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAEYPGEAITTVRGQGYRFD 221


>gi|331698992|ref|YP_004335231.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953681|gb|AEA27378.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 218

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 11/130 (8%)

Query: 80  DYPSLQTT-----LDF---FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           D P L  T     +DF    D+G DD V KP    E+LARV A+ RRL  +    E G +
Sbjct: 73  DLPVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELLARVRALLRRL--TPEMVEVGGV 130

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           R+   GR   V G    L  +E  +L  LM   G+ V + +I   ++   D    +  ++
Sbjct: 131 RMELSGRRVLVDGVEVGLANKEFELLRVLMLRAGQVVTREEILREVWNDPDLKTSKT-LD 189

Query: 192 SHISKLRKKL 201
            H+S LR+K+
Sbjct: 190 MHMSWLRRKI 199


>gi|323126805|gb|ADX24102.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 236

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                V+   A +G        +++  D    +  G+   L  RE  +L +L  + G+ +
Sbjct: 121 TIETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214


>gi|296128518|ref|YP_003635768.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020333|gb|ADG73569.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 235

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D    +D      G +G  +    +    E L+  A      +   L+  G    
Sbjct: 4   ILLVEDEESYRDPLSYQLGREGYDV--VTAATGPEALERFAEHGADLVLLDLMLPGLPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCRRLRLDSDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRRDT 121

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S   A         E G +R+  D     V GE+ P P +E  +LE L+ N  + + + Q
Sbjct: 122 SARPADDPEDDGVLEVGAVRMDVDRHTVHVHGELVPFPLKEFELLELLLRNPDRVLTRGQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   ++G  D   +   ++ H+ ++R K+ R+      + + R LGY +
Sbjct: 182 LIDRVWG-SDYVGDTKTLDVHVKRIRAKIERDPSAPTLLTTVRGLGYKL 229


>gi|254442742|ref|ZP_05056218.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198257050|gb|EDY81358.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 224

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 22/214 (10%)

Query: 1   MFVLIDDRALVK--------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           + ++ DD AL +        +GY   +  DG           E  L   A  D+  ++  
Sbjct: 4   ILIVEDDEALARGLRDNFACEGYEVAYAADG-------DTGLELLLDGGA--DIVLLDVM 54

Query: 53  LIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L G  G  + E  R  R    +P++ ++     +  +   + G DD V KP   RE++AR
Sbjct: 55  LPGLDGYSICEAAR--REGCSMPILMLTAKGQERDIVRGLELGADDYVVKPFSVRELIAR 112

Query: 112 VAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V A  RR +  + R  + G   +  D      +G+   L R+E ++LEYL+ + GK + +
Sbjct: 113 VRAFLRRHRSEDERCFSFGDFHLDRDSVRLTREGKEVKLTRKEYQLLEYLLIHSGKALTR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
             I ++++G     V +  V+  ++ LR K+  +
Sbjct: 173 QGIMASVWG-SSVMVTQRSVDRCVTTLRGKIEKE 205


>gi|217971271|ref|YP_002356022.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|217496406|gb|ACK44599.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
          Length = 229

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 82/162 (50%), Gaps = 14/162 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123
           +R H +VP++ ++     +  +   ++G +D ++KP   RE++AR+  + R L      +
Sbjct: 68  LRQHDKVPVLILTARDQEEEKIRLLEAGANDYLSKPFGIRELIARIKVLVRDLVDEPALS 127

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  + G +++        +  +   L ++E  ++E LM++ G+ V +T++   I+G    
Sbjct: 128 DVLQFGALKLQKSTHQLWLDQQEIALTKKEFALIETLMSHPGQLVKQTELLRDIWG---- 183

Query: 184 AVEENVVESH-----ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E +  +SH     +S+LRKKL +      + ++  LGY +
Sbjct: 184 --ETHTDDSHYLRILVSQLRKKLNDSTEQQLIKTEAGLGYRL 223


>gi|68250311|ref|YP_249423.1| transcriptional regulatory protein [Haemophilus influenzae
           86-028NP]
 gi|68058510|gb|AAX88763.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           86-028NP]
          Length = 221

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L    G  V
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSASYDAVVLDLTLPKLDGLDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           L+  R    H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A I RR 
Sbjct: 63  LQQWR--SNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E   +++  + R   +  +   L  RE ++LE  M N+   ++++ I   +  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDCVLSRSSIEEKLSS 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +DE +    ++ HI  LR+KL
Sbjct: 181 -WDEEISSGALDVHIYNLRQKL 201


>gi|78222245|ref|YP_383992.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193500|gb|ABB31267.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 224

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           S+VP++ I+    +++ +   + G DD + KP    E+LAR+ ++ RR     ++    P
Sbjct: 71  SEVPVLLITARGEIESRIKGLNFGADDYIVKPFDFHELLARLKSVIRR-----SKGRPSP 125

Query: 131 IRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183
           +    D       R     G    L   E  +LEYL  N G+ +++T++   IY   FD 
Sbjct: 126 LVAIDDLSLDTNSRSVCRGGREIRLSATEYNLLEYLALNSGRVISRTELTEHIYDTDFDR 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + NV++ +++ LR KL        + + R  GY
Sbjct: 186 --DSNVIDVYVNHLRNKLDKGFDRQLIHTVRGAGY 218


>gi|30250065|ref|NP_842135.1| response regulator PhoB [Nitrosomonas europaea ATCC 19718]
 gi|30139172|emb|CAD86042.1| possible phoB; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding [Nitrosomonas
           europaea ATCC 19718]
          Length = 240

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 109/231 (47%), Gaps = 21/231 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + +++       + G +    NS E    + +    D+  ++  L GK    +E
Sbjct: 6   LVVEDESAIQELIAYNLRNAGYTAVCTNSAEQAAAMVNEVLPDLVLLDWMLPGKSG--IE 63

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R +R   +   +P+I ++     +  +   ++G DD V KP   RE++AR+ A+ RR 
Sbjct: 64  LARSLRRDPRTKPIPVIMLTARVDERDKVIGLETGADDYVTKPFSPRELIARIKAVLRRS 123

Query: 120 --KVSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             + S+   + G +++         +D  D   + E+   P  E R+L +LMA+  +   
Sbjct: 124 LPEASDEILDIGGVQINPMTHRVTVTDLNDGTHEKELLLSP-TEYRLLYFLMAHAERVHT 182

Query: 170 KTQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + Q+   ++G  +F   VE+  V+ HI +LRK L      D V + R  GY
Sbjct: 183 RAQLLDRVWGDHVF---VEDRTVDVHIRRLRKALDVAGKADLVQTVRGAGY 230


>gi|330879178|gb|EGH13327.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 220

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 24/218 (11%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL  +GY   + +DG+S    ++L  E +        +  ++ F         +L R +R
Sbjct: 19  ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           A    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR   S  RA 
Sbjct: 68  AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   I +    +    QG    +   E ++L  LM   GK V + ++ + +YG + +
Sbjct: 125 PLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE N +E  I  LRKKL  +L    + + R +GY ++
Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217


>gi|323127230|gb|ADX24527.1| Two-component system response regulator [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 217

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P+I ++      T L  F+  + D V KP     ++ R+  +  R+ 
Sbjct: 61  LEVLKTIRKTSDIPIIMLTALDDEYTQLVSFNHLISDYVTKPFSPLILIKRIENVL-RVS 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + + + G + V         QG +  L ++E  I++YL     K V + Q+   I+G 
Sbjct: 120 TPDEKHQIGDLLVDEIEHSVYWQGTLVKLTKKEYDIIDYLAKRHQKIVTRDQLMDDIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKL 201
               ++  V+++HI  LRKK+
Sbjct: 180 --SELDTRVLDNHIKNLRKKM 198


>gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 229

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 9/148 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S +P++ +S   +    +    SG DD V KP +  E++ARV ++ RR +
Sbjct: 61  MEVIKQVRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTQ 120

Query: 121 --VSNNRAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
             V+N++ +    GP+ +  D  + + ++G+V  L   E  IL YL+A+   RV +   I
Sbjct: 121 GEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGIL-YLLASHPNRVFSADDI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
           F  ++   +  V    V  H+S LR K+
Sbjct: 180 FERVWQQ-ESVVSAKTVMVHVSHLRDKI 206


>gi|300214110|gb|ADJ78526.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 229

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 8/168 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  SQ+P++ +S        +     G DD V KP +  E++ARV ++ RR +
Sbjct: 61  MEVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAE 120

Query: 121 --VSNN---RAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             V NN   + E GP+ +  D  +   ++G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 HNVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHSNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
             ++   +  V    V  H+S LR K+ +    + V    + +GY I+
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227


>gi|295697098|ref|YP_003590336.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412700|gb|ADG07192.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 243

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ +I+R     +P+I ++        +   + G DD + KP   RE+ AR+ A+ RR 
Sbjct: 62  LDICKILRQEGITIPIIFLTALDDEVERVLCLEMGADDYITKPFRPRELAARIRAVLRRY 121

Query: 120 KVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++S N  +        GP+ +        V G+   L  +E ++L +L  +  K V +  
Sbjct: 122 QLSGNGEQRTADVLHAGPVIIDLAKHTVTVFGQDVSLTLKEFQLLHHLAEHADKVVTRDT 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   I+G F    +  VV+ HIS LR K+  N      + + R +GY +
Sbjct: 182 LLDHIWG-FKYTGDTRVVDVHISHLRNKIEPNPASPQLIKTVRGVGYKL 229


>gi|229014970|ref|ZP_04172051.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228746320|gb|EEL96242.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 207

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 8/142 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR    N   
Sbjct: 47  IREERTIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRYTKYNTET 106

Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N  E G + + +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 107 NKNKNIIEIGNLTLNTDARQVWVRGKETRLTPKEFDILELLARNKGMVLSIEKIYEAVWK 166

Query: 180 LFDEAVEENVVESHISKLRKKL 201
                 + NV+  HI+++R K+
Sbjct: 167 ENFYKSDNNVM-VHITRIRDKI 187


>gi|297560783|ref|YP_003679757.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845231|gb|ADH67251.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 241

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 19/158 (12%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--P 130
           +P++ ++   ++Q  +    +G DD V KP    E++ R+ AI RR   S  R   G  P
Sbjct: 85  LPVLFLTARDTVQDRVAGLRAGADDYVTKPFSLEEVVLRLNAILRR---SGRRGSEGAEP 141

Query: 131 IR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           +R     +  +G      G    L   E  +L YL+ N GK V+K QI   ++G   E+ 
Sbjct: 142 LRYADLELDEEGHQVRRAGAPVRLSPTEFALLRYLLLNAGKVVSKAQILDRVWG--GESD 199

Query: 186 EENVVESHISKLRKKL---RNKLGFDPVDSKRFLGYSI 220
           +  VVE+++S LR+K+   R  L    + + R +GYS+
Sbjct: 200 DIRVVETYVSYLRRKVDAGRPAL----IHTVRGVGYSL 233


>gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 234

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
           Q P++ ++   ++Q  +   ++G DD + KP    E+LAR+ A+ RR  + ++ A   G 
Sbjct: 72  QTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRRPPLQSDVALRVGD 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + +  R  +       L  RE  +LEYLM +  + +++TQI   ++  FD   +  V+
Sbjct: 132 LELDAAQRLVKRGERPIELSPREFSLLEYLMRHPNQVLSRTQIAQHVWS-FDFYGDYKVI 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +I  LR+K+        + + R +GYS+
Sbjct: 191 DVYIGYLRRKIDRHGASSMIHTVRGVGYSM 220


>gi|220928581|ref|YP_002505490.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998909|gb|ACL75510.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 224

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 67  IRAHSQVPLI---GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--- 120
           +R  S VP+I    + D P++   LD    G DD ++KP+   E+++R+ AI RR K   
Sbjct: 65  VRQTSTVPIIFMTALDDEPNVVFGLDI---GGDDYISKPVRTSELISRINAIMRRQKQTD 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   R  +G + V        V  +   L   E ++L  L+ N+GK +++  I   ++ 
Sbjct: 122 GLDTGRITSGSVVVEPLKCKVCVNSQEVFLTAVEYKLLLVLLENKGKVMSRNTIIEKLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +    V+ N +  ++ +LR+K+        +++ R LGY
Sbjct: 182 IDSNFVDYNTLNVYMKRLREKIETG-DEKHIETVRGLGY 219


>gi|71736484|ref|YP_275217.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557037|gb|AAZ36248.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323718|gb|EFW79802.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320328357|gb|EFW84361.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882464|gb|EGH16613.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889733|gb|EGH22394.1| DNA-binding response regulator [Pseudomonas syringae pv. mori str.
           301020]
 gi|330987871|gb|EGH85974.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010798|gb|EGH90854.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 227

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 7/159 (4%)

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVS 122
           +RA     P++ IS    +   +    +G DD + KP    E+ ARV  + RR   +   
Sbjct: 67  LRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAG 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
               +   + +    R+    GE   L   E ++LE+LM N G+ + +  IF  ++G  F
Sbjct: 127 KTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHF 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     N+++ HI +LRKK+        + + R  GY I
Sbjct: 187 DPGT--NLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|70729143|ref|YP_258879.1| OmpR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343442|gb|AAY91048.1| DNA-binding response regulator, OmpR family [Pseudomonas
           fluorescens Pf-5]
          Length = 254

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 16/165 (9%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R  S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 76  LMLPGEDGLSLCRWLRTESDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 135

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V ++R+E      F + R   V        G V PL   E R+L ++   R 
Sbjct: 136 QTILRR--VRDDRSEQRANIRFDNWRLNSVLRQLISADGLVVPLSNAEFRLL-WVFIERP 192

Query: 166 KRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +RV ++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 193 RRVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 232


>gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 231

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N    + E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGIIRIRSVEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETVINGEKFIHTVWGVGYKIE 230


>gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
 gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
          Length = 232

 Score = 54.7 bits (130), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL-----RNKL 205
           IF  ++   D+  E  N V  HI  LRKKL     +NKL
Sbjct: 183 IFQQVWA--DDYFEGGNTVMVHIRTLRKKLGEDKRKNKL 219


>gi|323692686|ref|ZP_08106915.1| two-component system response regulator [Clostridium symbiosum
           WAL-14673]
 gi|323503240|gb|EGB19073.1| two-component system response regulator [Clostridium symbiosum
           WAL-14673]
          Length = 236

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 91/213 (42%), Gaps = 24/213 (11%)

Query: 27  EGFNSLEF----EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           EGF  +E     E   +S    D+  ++  + GK   +  L   IR    VP++ ++   
Sbjct: 30  EGFEVIEASNGKEAVEKSGGSVDLIILDVMMPGKSGILACLE--IRKKLTVPILFLTART 87

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRV----- 133
                   F +G DD + KP  + E++ARV A+ RR  V     N + +   I++     
Sbjct: 88  QDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYYVYQGGGNRKEDDAQIQIRDLLL 147

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D R+  ++G    L   E RIL  L  NRGK      I+ +++      +  N V  H
Sbjct: 148 NKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQNIYESVWEEPYYYISNNTVMVH 207

Query: 194 ISKLRKKLRNKLGFDPVDSKRFL-----GYSID 221
           I  LRKKL      DP + K  +     GY I+
Sbjct: 208 IRNLRKKLEK----DPKNPKYIVNVWGKGYRIE 236


>gi|281492338|ref|YP_003354318.1| two-component system response regulator [Lactococcus lactis subsp.
           lactis KF147]
 gi|281376002|gb|ADA65493.1| Two-component system, response regulator [Lactococcus lactis subsp.
           lactis KF147]
          Length = 223

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 17/164 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  SQ+P+I IS        +   + G DD V KP     + A++ A+ RR        
Sbjct: 66  LRKLSQIPIIFISSASDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIE 125

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+ +        +    +G   E++     L   E +IL  L    G+ V K +I   +
Sbjct: 126 KLEFAGYVLSENTLISTQEGEREEIE-----LTSSENKILTLLFRGNGEVVTKEKILQEL 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +   DE ++ N +   +++LRKKL  ++GFD  + +KR  GY++
Sbjct: 181 WQT-DEFIDANTLNVKMTRLRKKL-GEIGFDKHIMTKRGSGYAL 222


>gi|268609712|ref|ZP_06143439.1| hypothetical protein RflaF_09472 [Ruminococcus flavefaciens FD-1]
          Length = 219

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 28/229 (12%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + D       ++G ++    S      L S  R D+  ++  L G  GE++
Sbjct: 4   IMIVDDDISISDMLTEALTNEGYTVRKAYSGTEALMLLSQNRPDLILLDLMLPGLTGEQL 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L  P I      +P+I +S    +   +     G  D V KP + +E+LARVA   R  K
Sbjct: 64  L--PEI----KDIPVIVVSAKADISDKVGLLLGGAADYVTKPFNIQELLARVAVQLR--K 115

Query: 121 VSNNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +N  A           +T    V +DG +         L R E  IL+ L+ N  + VA
Sbjct: 116 NANTSADNIMSYRELTLDTASHIVSADGVE-------IRLTRTEYAILKLLICNPEQVVA 168

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           K  I   I     +  E++ ++ HI  LR+KLR+  G D + +   +G+
Sbjct: 169 KLTILERIAADTPDCTEDS-LKIHIHNLRRKLRSVTGQDYISAVWGIGF 216


>gi|253580205|ref|ZP_04857472.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848724|gb|EES76687.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 229

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R +R +    +I ++        +  +++G DD + KP     +L ++ A +RR  
Sbjct: 61  LEFVRWMRCNYNTYIICLTALDQEIDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +  +G I   +      ++     L + E ++L + + N  + ++KTQI   ++
Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            L  + V+EN +  +I +LR+K+ +     PV  K   G    WN
Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224


>gi|229090970|ref|ZP_04222194.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228692371|gb|EEL46106.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 234

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E+L RV A+ +R +++ +++
Sbjct: 77  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELLVRVKALLKRYQITVSQS 136

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 137 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 195

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 196 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 231


>gi|257125818|ref|YP_003163932.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257049757|gb|ACV38941.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 226

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 10/165 (6%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ + IR +  + P++ ++    ++  +   D G DD + KP    E++AR+  + RR 
Sbjct: 60  FEILKKIRENGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRRN 119

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             SN+ A    +   + V  +  D         L  RE  ILEY++ N+ + +++ QI  
Sbjct: 120 PTSNSNASNVFKIANLTVNCNSHDVFRDETFIKLSTREFTILEYMIRNKERVLSREQIEQ 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
            I+  +D     NV++ +I  LR+K+    GF+P  + + R +GY
Sbjct: 180 HIWN-YDYEGGTNVIDVYIRYLRRKIDK--GFEPKLIHTIRGIGY 221


>gi|222080821|ref|YP_002540860.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium radiobacter K84]
 gi|221725500|gb|ACM28589.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium radiobacter K84]
          Length = 226

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 3/152 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           + +P+I ++   +    L     G DD + KP    EI+ RV  + RR+K++ ++     
Sbjct: 75  AAIPVIMLATDATENDKLLALSLGADDYLVKPFSMLEIVLRVRNLLRRMKINESQLVLKV 134

Query: 131 IRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             +  D     V    +   L   E +ILE+LM N G    +T + + ++G     V+  
Sbjct: 135 SDIVLDRNSYTVLRSNKEIKLGPTEYKILEFLMRNPGTVHTRTDVLTNVWGPH-ATVDPR 193

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           VV+ HI +LRK + N    D + + R  GY++
Sbjct: 194 VVDVHIGRLRKCISNSENDDIIRTIRGAGYAL 225


>gi|254417772|ref|ZP_05031496.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196183949|gb|EDX78925.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 223

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 9/155 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETG 129
           Q P++ +S    ++  +    +G DD + KP    E++ARV A+ RR +    +   + G
Sbjct: 72  QTPVLFLSALGEVEDRVTGLKAGADDYLVKPYAFAELIARVEALSRRRETGGVQTVLKVG 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +    R          L  RE ++LE+LM + G+ V +T +   ++   FD   + N
Sbjct: 132 DLEMNLIARTVHRGATEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVWEYHFDP--QTN 189

Query: 189 VVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
           V++ HIS+LR K+    GFD   + + R  GY ++
Sbjct: 190 VIDVHISRLRSKIDK--GFDRAMLQTVRGAGYRLE 222


>gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 225

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 12/189 (6%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L ++ + D+  ++  +   G    E+ R +RA S +P++ ++    +   +   D G DD
Sbjct: 41  LAAAWKPDLVVLDVLM--PGTDGWEVCRRLRAGSSLPILMLTAKDEVADRVKGLDLGADD 98

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPR 151
            + KP    E+LAR+ A+ RR + ++      P+ V++D       R+    G    L  
Sbjct: 99  YLVKPFALEELLARIRALLRRSRQADTAMR--PL-VYADLTLDHATREVRRGGRPIQLTA 155

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           RE  +L   M +  + + + QI   ++G+ D   E NV+E ++  LR+KL        + 
Sbjct: 156 REFELLALFMEHPRQVLTRDQIMDRVWGI-DYGGESNVLEVYVGMLRQKLEEGGEKRIIH 214

Query: 212 SKRFLGYSI 220
           + R +GY +
Sbjct: 215 TVRGVGYVL 223


>gi|83814805|ref|YP_446586.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294508518|ref|YP_003572577.1| response regulator DrrA [Salinibacter ruber M8]
 gi|83756199|gb|ABC44312.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294344847|emb|CBH25625.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 245

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 13/128 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAETGPIRVFSDGRDPE-----VQGE 145
           G DD + KP   RE+LARV A++RR++V   +  +A+  PI +     +PE     V+GE
Sbjct: 100 GADDYITKPFSIREVLARVKALFRRVEVDQETQGQADDTPIELGKVVVEPEKRKVTVEGE 159

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L  +E  +L     + G+  ++ ++   ++G +  +   + V +HI+    +LRNK+
Sbjct: 160 AVDLTSKEFELLLLFARHPGRAFSRDELLDEVWG-YQYSGYSHTVNTHIN----RLRNKI 214

Query: 206 GFDPVDSK 213
             DP + +
Sbjct: 215 EPDPSEPR 222


>gi|18311346|ref|NP_563280.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|110799262|ref|YP_697054.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168205193|ref|ZP_02631198.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168210332|ref|ZP_02635957.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213275|ref|ZP_02638900.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168216671|ref|ZP_02642296.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169347122|ref|ZP_02866064.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182625790|ref|ZP_02953557.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|18146030|dbj|BAB82070.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110673909|gb|ABG82896.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169296805|gb|EDS78934.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170663236|gb|EDT15919.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170711566|gb|EDT23748.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170715215|gb|EDT27397.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177908946|gb|EDT71433.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182381197|gb|EDT78676.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 232

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 22/232 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           +++DD   ++D        +G+++    +GF +LE  +      +ED+  +   ++    
Sbjct: 9   LVVDDEKEIRDAIDIYLRGEGINVIKAGDGFEALEILD------KEDIHLVVLDIMMPKL 62

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +     IR    +P+I +S        +   + G DD V KP +H E++ARV +  RR
Sbjct: 63  DGMRTCLKIRESRNIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRR 122

Query: 119 LKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                NR  T  + V  D       +   ++GE   L   E +IL  L ++ G+  +  +
Sbjct: 123 YDYPLNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKE 182

Query: 173 IFSAIYGLFDEAV--EENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   +E     EN V  HI ++R+K+  N    + +     LGY ID
Sbjct: 183 IYERVW---EEPFYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGYKID 231


>gi|332526604|ref|ZP_08402711.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332110867|gb|EGJ11044.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 224

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 12/132 (9%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
            D+G DD + KP    E+ AR+ A+ RR      RA      G + +    R     G+ 
Sbjct: 99  LDAGADDYLVKPFEFDELTARIRAVTRR---HGGRAAPLLTHGGVTLDPATRQVTKDGQP 155

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  RE  +LE LM   G  +++ Q+   +YG + +AVE N V  ++ +LR+    KLG
Sbjct: 156 VLLSSREFAVLEALMQRPGAVLSRAQLEDRLYG-WGDAVESNAVSVYVHQLRR----KLG 210

Query: 207 FDPVDSKRFLGY 218
            D + + R +GY
Sbjct: 211 ADFIRNMRGVGY 222


>gi|306821334|ref|ZP_07454943.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550621|gb|EFM38603.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 227

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 13/181 (7%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D+  ++  L GK GE ++   R IR  S VP+I ++      T +D  + G DD ++KP 
Sbjct: 48  DLILLDLMLPGKSGEDII---REIRQVSAVPIIVLTAKGDTNTLVDILEMGADDYISKPF 104

Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRIL 157
             RE+ AR  +  R+ K+ N+  +   ++ F D       R   V      L ++E  +L
Sbjct: 105 DVREVKARAKSHLRK-KMDNHTFQEEVLK-FEDLTLNISSRTASVGENPITLTQKEFDML 162

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
              +    +   K  +++ ++G      ++N + +HIS+LR K++  +  D +D+   +G
Sbjct: 163 SLFLHEPKRVFTKEILYTKVWGDMYYG-DDNTINAHISRLRSKIKEYMQKDIIDTVWGVG 221

Query: 218 Y 218
           +
Sbjct: 222 F 222


>gi|290770175|gb|ADD61934.1| putative protein [uncultured organism]
          Length = 220

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 5/162 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLK 120
           ++ R IR  S +P+I ++   S    L   + G DD ++KP + + +LAR+  +  R  +
Sbjct: 61  QVCREIRQKSNLPIIVLTSRNSDFDELMSLNIGADDYISKPYNAQVLLARIQKLLARTYE 120

Query: 121 VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +N   T      +  + +   QG+   L + E  IL  LM N+G  + +  I   ++ 
Sbjct: 121 IQDNVVLTHKGLTLNLLKAEISYQGQRKSLTKNEMGILRLLMVNKGNIIPRDAIIDELWQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             ++ ++EN +  +I +LRK L  ++G  D +++KR LGY +
Sbjct: 181 -SEQFIDENTLNVNIVRLRKTLA-EIGLPDYLETKRGLGYCV 220


>gi|251781983|ref|YP_002996285.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390612|dbj|BAH81071.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 236

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                V+   A +G        +++  D    +  G+   L  RE  +L +L  + G+ +
Sbjct: 121 TIETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214


>gi|240136993|ref|YP_002961462.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens AM1]
 gi|254558845|ref|YP_003065940.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens DM4]
 gi|240006959|gb|ACS38185.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens AM1]
 gi|254266123|emb|CAX21875.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens DM4]
          Length = 232

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R +R  +   P++ +S    +   +    +G DD + KP    E+LAR   + RR 
Sbjct: 60  LSLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRR 119

Query: 120 KVSNNRAETGPIRVFS---DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +  ++E    RV     D     V   G    L  RE R+LEYLM + G+ V +T + 
Sbjct: 120 TAATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLL 179

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++   FD   + NV++ H+S+LR K+        + + R  GY I
Sbjct: 180 EHVWDYHFDP--QTNVIDVHVSRLRAKIDRGFEHPMIHTVRGAGYVI 224


>gi|206560046|ref|YP_002230810.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198036087|emb|CAR51982.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 221

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 2/137 (1%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAET 128
           +   P++ ++    L   +   D+G DD + KP    E+ AR+ A+ RR +   + R   
Sbjct: 70  YDATPVLIVTARDQLSDRIRGLDAGADDYLVKPFQLDELYARLRALTRRSQGRVSERLVC 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             + V    R+    GE   L   E R L  LM  +G+ V + Q+   +YG  D A+E N
Sbjct: 130 RDVHVDPARREVTRAGEPVALSIHEYRTLLALMERQGRVVTRAQLEERVYG-NDGAIESN 188

Query: 189 VVESHISKLRKKLRNKL 205
            +  +I +LR+KL ++L
Sbjct: 189 TIAVYIHQLRRKLGDEL 205


>gi|330863190|emb|CBX73317.1| signal transduction histidine-protein kinase baeS [Yersinia
           enterocolitica W22703]
          Length = 670

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 11/170 (6%)

Query: 36  EWLQSSAREDVSAIEAF--------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87
           +WL + A E V+A+           L+  G   + + R IR  S VP++ ++        
Sbjct: 500 QWLTNGA-EVVAAVRQSPPAIILLDLMLPGSDGISICREIRRFSDVPIMMVTAKTEEIDR 558

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEV 146
           L   + G DD + KP   RE++ARV  I RR +    + +E+ P+ +         QG +
Sbjct: 559 LLGLEIGADDYICKPYSPREVVARVKTILRRCQQQREQPSESAPLIIDESRFQASYQGHL 618

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
             L   E R+L+ L    G   ++ Q+ + +Y  +   V +  ++SHI K
Sbjct: 619 LELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKK 667


>gi|322411348|gb|EFY02256.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 236

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                V+   A +G        +++  D    +  G+   L  RE  +L +L  + G+ +
Sbjct: 121 TIETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214


>gi|302342499|ref|YP_003807028.1| two component transcriptional regulator, winged helix family
           [Desulfarculus baarsii DSM 2075]
 gi|301639112|gb|ADK84434.1| two component transcriptional regulator, winged helix family
           [Desulfarculus baarsii DSM 2075]
          Length = 227

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 79/152 (51%), Gaps = 10/152 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           ++P++ ++   S    +  F+ G DD + KP   RE++ RV AI RR   +    ++ P+
Sbjct: 77  RIPVLMLTALASETDRIVGFELGADDYLAKPFSPRELVLRVRAILRR--QTGPEEQSAPL 134

Query: 132 R-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           R     +  D  +  +  E+  L   E ++L +L+AN G+   + Q+   ++G ++    
Sbjct: 135 RKDALVIHPDRFEVRIDDEMVALTATEFKLLHHLVANAGRVQTRQQLLEHVWG-YEYDGY 193

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              V++H+ +LRKK+   L  D +++ R +GY
Sbjct: 194 ARTVDTHVRRLRKKI-GPLS-DDIETIRGIGY 223


>gi|295090391|emb|CBK76498.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 237

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 8/142 (5%)

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE-- 141
           LQ  +     G DD + KP +   +LAR+ ++ RR      + +   ++      DP   
Sbjct: 93  LQDEIHALGLGADDYLTKPCNMERLLARIKSLLRR--TEQQQIQHDLLKGNGFLLDPHTF 150

Query: 142 ---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              +    + LP  E +IL  L+ N  + V+K ++F A++G  D+ ++EN ++ + ++LR
Sbjct: 151 TIYLGKTSYVLPPNEGKILLTLLMNYPRTVSKEELFHALWGT-DKFIDENALQVNFTRLR 209

Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220
           K +RN    D +++ R  GY +
Sbjct: 210 KTMRNYGLDDRIETVRGEGYRL 231


>gi|256423864|ref|YP_003124517.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256038772|gb|ACU62316.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 224

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G K+LE   I   + Q  +I IS   SL   +     G DD + KP H  E+ AR+ +
Sbjct: 57  GDGLKILE--EIKEQNKQDGVIIISAKNSLDDKIKGLQIGADDYLTKPFHLPELAARIYS 114

Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR +  N N  E   +++    +   V      L ++E  +L Y ++N+ K ++K+ +
Sbjct: 115 VIRRKQFGNVNIIELNELKINLLAKTVSVNDNNVVLTKKEFDLLLYFISNKNKVISKSAL 174

Query: 174 FSAIYG----LFDEAVEENVVESHISKLRKKL 201
              + G    +FD     + +  HI  L+KKL
Sbjct: 175 AEHLSGDVADMFDNY---DFIYVHIKNLKKKL 203


>gi|229061003|ref|ZP_04198357.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228718372|gb|EEL70006.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 236

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 7/157 (4%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K+ S  + 
Sbjct: 81  RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQKI 140

Query: 127 ETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             G   V  D +  +V    E   LP +E  +L  L    G+   + Q+   I+G+ D A
Sbjct: 141 HFG--NVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGI-DYA 197

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  V+ HI +LR++      F  +++ R LGY ++
Sbjct: 198 GDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLE 233


>gi|187777886|ref|ZP_02994359.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC
           15579]
 gi|187774814|gb|EDU38616.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 6/145 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +N A     E   I +  D R+  V  +   L  RE  IL+ LM    K   K  +F +
Sbjct: 125 FSNIAPQNLLEYKEISLNKDTREVFVYDKQIMLTSREFDILQLLMGYPKKVFTKANLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++   +   ++N +  HIS LR KL
Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKL 208


>gi|196034428|ref|ZP_03101837.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196042110|ref|ZP_03109394.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218905762|ref|YP_002453596.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228917175|ref|ZP_04080732.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|301056045|ref|YP_003794256.1| response regulator [Bacillus anthracis CI]
 gi|195992970|gb|EDX56929.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196027046|gb|EDX65669.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218539918|gb|ACK92316.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228842376|gb|EEM87467.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|300378214|gb|ADK07118.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 230

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 18/203 (8%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           ++ LVK+G+      DG   EG N+     +L+ S   D+  ++  ++ K +  LE+ RI
Sbjct: 19  EKYLVKEGFQVTIASDGE--EGVNT-----YLKGSF--DLIILD-IMMPKLDG-LEVVRI 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNR 125
           IR  S VP++ +S   +          G DD + KP    E+ ARV A I R  K S   
Sbjct: 68  IREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKYSATE 127

Query: 126 AETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                I++     DP     E  G+   L  +E  IL+  + N+ +   K QI++ I+  
Sbjct: 128 TTEKTIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTLIWN- 186

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
            +   ++NV+  H+ +LR+K+ +
Sbjct: 187 EEYYGDDNVINVHMRRLREKIES 209


>gi|110801717|ref|YP_699624.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682218|gb|ABG85588.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 232

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 22/232 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           +++DD   ++D        +G+++    +GF +LE  +      +ED+  +   ++    
Sbjct: 9   LVVDDEKEIRDAIDIYLRGEGINVIKSGDGFEALEILD------KEDIHLVVLDIMMPKL 62

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +     IR    +P+I +S        +   + G DD V KP +H E++ARV +  RR
Sbjct: 63  DGMRTCLKIRESRNIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRR 122

Query: 119 LKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                NR  T  + V  D       +   ++GE   L   E +IL  L ++ G+  +  +
Sbjct: 123 YDYPLNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKE 182

Query: 173 IFSAIYGLFDEAV--EENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   +E     EN V  HI ++R+K+  N    + +     LGY ID
Sbjct: 183 IYERVW---EEPFYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGYKID 231


>gi|330995652|ref|ZP_08319550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paraprevotella xylaniphila YIT 11841]
 gi|329574711|gb|EGG56272.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paraprevotella xylaniphila YIT 11841]
          Length = 232

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 5/149 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+ ++ + +R    +P+I ++   +    +  F  G DD ++KP   RE+  R+ A+ 
Sbjct: 62  GFKMAKMLKQVRETRDIPIIFLTARDTENDAVTGFTLGADDYISKPFSLREVQMRIKAVL 121

Query: 117 RRLKVSNN--RAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR         A  G   +++  + ++  + GE   L + E  IL  L+ N G+  ++ +
Sbjct: 122 RRTAPQQAVPAAYIGFKELKLDLNKKEAVLCGEALQLTKTEFEILRLLLENEGRVFSRAE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I   I+   D  V +  V+ +I++LRKKL
Sbjct: 182 ILRRIWN-NDAEVLDRTVDVNITRLRKKL 209


>gi|294013097|ref|YP_003546557.1| CheY-like response regulator [Sphingobium japonicum UT26S]
 gi|292676427|dbj|BAI97945.1| CheY-like response regulator [Sphingobium japonicum UT26S]
          Length = 239

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 38/222 (17%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58
            +L+DD   +++      G +G     F     E   ++  R + +AI+  ++     GE
Sbjct: 7   LLLVDDERSIREPLAQYLGRNG-----FRVTAVENAAEARVRLNANAIDLVILDIMMPGE 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             L L R IR  S++P+I ++        +   + G DD V KP   RE++AR+  I+RR
Sbjct: 62  DGLSLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRR 121

Query: 119 LKVSNNRAETGPI---------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
           +     R  T P                R   DG     +G   PL   E  ++      
Sbjct: 122 VATGGQRV-TAPDGATYAFAGWLLKTQERTLVDG-----EGVALPLSTAEYNLMLAFATR 175

Query: 164 RGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
             + +++ Q+     G     FD A     +++ IS+LRKK+
Sbjct: 176 PNQVLSRDQLLDITQGREANAFDRA-----IDNQISRLRKKI 212


>gi|284051075|ref|ZP_06381285.1| multi-component transcriptional regulator [Arthrospira platensis
           str. Paraca]
          Length = 587

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 16/169 (9%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L R +R+H+ Q+P++ ++   S +  +   D+G DD + KPI   E++AR+ A+ RR 
Sbjct: 60  IALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA 119

Query: 120 KVSNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +S       P+  + D   +P       Q  V PL  +E  ++E  + +  +  +   I
Sbjct: 120 TIS-----LPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
              ++ + +E   +N V +HI  LR KL++  G DP  +++   +GY I
Sbjct: 175 IEHLWSI-EEPAADNTVRAHIKSLRNKLKDA-GGDPKLIENVYGIGYRI 221


>gi|253690600|ref|YP_003019790.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251757178|gb|ACT15254.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 220

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G++  GFN   F E    +A    +  +A ++      +
Sbjct: 3   ILLIEDDRLIGDGLKA-----GLNKLGFNIDWFTEGKAGAAALKAAPYDAVVLDLSLPGM 57

Query: 62  ELPRIIRAHSQV----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +   I+R   Q     P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ R
Sbjct: 58  DGMDILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIR 117

Query: 118 RLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R       A T G + +    R   +  E   L  RE  +LE  + N  + + + Q+   
Sbjct: 118 RRHGQLQPALTHGAVSLEPGSRSVTLNNEPLILKSRELALLELFLLNPNRVLTRAQLEEK 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           +YG +D+ V  N VE HI  LRKKL
Sbjct: 178 LYG-WDDDVSSNAVEVHIHHLRKKL 201


>gi|158423577|ref|YP_001524869.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158330466|dbj|BAF87951.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 220

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 8/152 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130
           + P++ ++   ++   +   D G DD + KP  +RE+ AR  A+ RR    S+N    GP
Sbjct: 72  RTPVLVLTARSAVDDRISALDLGADDYLIKPFDYRELEARARALLRRAAGQSDNLLRLGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +   GR   V+G+   L RRE  +LE L +  G+ V K ++   ++  FD+    N V
Sbjct: 132 LTIDRAGRTASVEGKALDLTRRELTVLEILASRPGRFVPKEELVEQLFS-FDQDPSPNAV 190

Query: 191 ESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220
           E  +++LR+    KL   PV+  ++R LGY +
Sbjct: 191 EQFVARLRR----KLAATPVEIRTERGLGYQL 218


>gi|57234870|ref|YP_181048.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57225318|gb|AAW40375.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 225

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 3/137 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           IRA S +P++ ++   + Q     F+ G DD + KP    E++ARV ++ +RL K S + 
Sbjct: 68  IRAFSSLPILILTARNNEQEIFTAFELGADDYITKPFQPLELIARVKSLLKRLNKTSQDL 127

Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + G  R  +  ++   +     L   E ++L  L++  G  V+   I  +I+G  +E 
Sbjct: 128 GIKYGHWRFGNSLKEISYKNNRVNLTVTEGQLLHILLSKTGSTVSYADISKSIWGR-NEY 186

Query: 185 VEENVVESHISKLRKKL 201
             +  +++HI ++R+KL
Sbjct: 187 YAKETIKTHIMRIRQKL 203


>gi|37676469|ref|NP_936865.1| response regulator [Vibrio vulnificus YJ016]
 gi|37201011|dbj|BAC96835.1| response regulator [Vibrio vulnificus YJ016]
          Length = 232

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ +  LP   +  + VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  
Sbjct: 69  GDSISHLPGWKKTKN-VPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQL 127

Query: 117 RRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R  +     S+++ ET  + +    R+   +GE   L R E  +L +L +N G+   + +
Sbjct: 128 RSPESSEQGSSDKVETENLVIDKSTREVFFKGEQITLTRTEFDLLLFLASNLGRVFTRDE 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G ++       V +H+ +LR+KL    G + +++ R +GY +
Sbjct: 188 LLDHVWG-YNHFPTTRTVNTHVLQLRQKLA---GLE-IETLRGVGYKM 230


>gi|319944908|ref|ZP_08019170.1| two component response regulator [Lautropia mirabilis ATCC 51599]
 gi|319741478|gb|EFV93903.1| two component response regulator [Lautropia mirabilis ATCC 51599]
          Length = 221

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 8/167 (4%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   LE+ R IR+  + +P++ ++   +L   +   D+G DD + KP    E+LAR+ A+
Sbjct: 56  GRDGLEVLRSIRSQPTTLPVLIVTARDALDDRIAGLDAGADDYILKPFEISELLARMRAV 115

Query: 116 YRRLKVSNNRAETGPIRVFSDG-RDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR     N   +  +        +   QG+    L  RE  +L  LM   G  +++  +
Sbjct: 116 LRRQGGQANPILSSALLTLDPATHEASRQGQPTVRLSNREFALLHALMQRPGAILSRADL 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              IYG + + VE N +E  I  LRK    KLG + + + R  G+ +
Sbjct: 176 EDRIYG-WGQEVESNAIEYLIHSLRK----KLGSEAIRNIRGAGWMV 217


>gi|309776750|ref|ZP_07671724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915498|gb|EFP61264.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 217

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 9/148 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKV 121
           R IR    VP++ +S        L+ ++ G DD + KP+  + +  ++ A+ +R   L+ 
Sbjct: 65  RRIREQQAVPILIMSARKDRSDQLNGYELGADDYIEKPVDPQILAVKIRAVLQRTNDLQA 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             + + +G I +  D     + G    L  +E  +L  L++N GK + K  IF+ I+G+ 
Sbjct: 125 KKSCSCSG-ILIERDKHRASLNGNELELTGKEFELLSLLVSNAGKTLRKEYIFARIWGM- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP 209
           D   E+  +  HI    K LR+K+  DP
Sbjct: 183 DSFSEQQTLTVHI----KMLRDKIEKDP 206


>gi|260881100|ref|ZP_05403616.2| transcriptional activator protein Irlr [Mitsuokella multacida DSM
           20544]
 gi|260849516|gb|EEX69523.1| transcriptional activator protein Irlr [Mitsuokella multacida DSM
           20544]
          Length = 226

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDP 140
           S++  +   D+G DD + KP    E++AR+ A+ RR   K+  +  E G   +    +  
Sbjct: 84  SVEDRVTGLDAGADDYLVKPFEFAELMARLRALGRRSTQKIQQDVVEVGEFTLNRTAKVL 143

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           + + +V  L  RE +I + L  N G  V +  I   I+GL +  V  N ++S++  LRKK
Sbjct: 144 KKKDKVIQLSPREFQIFDLLAQNIGIVVPRDIILDRIWGL-ESDVSSNNIDSYMKILRKK 202

Query: 201 LRNKLGFDPVDSKRFLGYSID 221
           L    G   + + R +GY ++
Sbjct: 203 LDLGDGGTVIKTVRGVGYKLE 223


>gi|206580423|ref|YP_002239584.1| transcriptional regulatory protein BasR [Klebsiella pneumoniae 342]
 gi|288936427|ref|YP_003440486.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290510517|ref|ZP_06549887.1| transcriptional regulatory protein basR/pmrA [Klebsiella sp.
           1_1_55]
 gi|206569481|gb|ACI11257.1| transcriptional regulatory protein BasR [Klebsiella pneumoniae 342]
 gi|288891136|gb|ADC59454.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289777233|gb|EFD85231.1| transcriptional regulatory protein basR/pmrA [Klebsiella sp.
           1_1_55]
          Length = 223

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D AL+  G I     +G   +G ++    E   S A    S I   L    E  L
Sbjct: 3   ILVIEDDALLLQGLILAMQSEGYVCDGVST--AHEAALSLASNHYSLIVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L R+ R     P++ ++   +L+  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N    G +R+    R   +      L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGDNEISVGDLRLNVTRRLVWLGETALELTPKEYALLSRLMMKAGSPVHREILYNDIYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR+    K+G   + + R  GY +
Sbjct: 181 -WDNEPATNTLEVHIHNLRE----KIGKSRIRTVRGFGYML 216


>gi|148545276|ref|YP_001265378.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031040|ref|YP_001666271.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719204|ref|YP_001746892.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|148509334|gb|ABQ76194.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
 gi|166857528|gb|ABY95935.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757207|gb|ACA70523.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 225

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 10/166 (6%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++RA   +VP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EVLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S+  A+T      + V    R     G+   L  +E  +LE LM  RG+ + K+ I S 
Sbjct: 119 GSSGYAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQ 178

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + FD   + NV+E  + +LR K+ +      + + R +GY +D
Sbjct: 179 VWDMNFDS--DTNVIEVAVRRLRAKIDDDFAPKLIHTVRGMGYLMD 222


>gi|223932940|ref|ZP_03624935.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|253752347|ref|YP_003025488.1| response regulator protein [Streptococcus suis SC84]
 gi|253754173|ref|YP_003027314.1| response regulator protein [Streptococcus suis P1/7]
 gi|253756107|ref|YP_003029247.1| response regulator protein [Streptococcus suis BM407]
 gi|302024297|ref|ZP_07249508.1| response regulator protein [Streptococcus suis 05HAS68]
 gi|330833284|ref|YP_004402109.1| winged helix family two component transcriptional regulator
           [Streptococcus suis ST3]
 gi|56684580|gb|AAW21991.1| two-component regulator [Streptococcus suis]
 gi|223898386|gb|EEF64752.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|251816636|emb|CAZ52276.1| response regulator protein [Streptococcus suis SC84]
 gi|251818571|emb|CAZ56404.1| response regulator protein [Streptococcus suis BM407]
 gi|251820419|emb|CAR47066.1| response regulator protein [Streptococcus suis P1/7]
 gi|292558947|gb|ADE31948.1| two-component regulator [Streptococcus suis GZ1]
 gi|319758749|gb|ADV70691.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis JS14]
 gi|329307507|gb|AEB81923.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis ST3]
          Length = 216

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  SQ+P++ ++      T L  F+  + D V KP     ++ R+  I R  K
Sbjct: 61  LEVLKEIRKTSQIPILMLTAMGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRG-K 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  E G I +        ++ E   L ++E  +L YL   RGK V++  +   I+G 
Sbjct: 120 GETDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLAKRRGKIVSRDNLMMGIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKL 201
            +  ++  V+++HI  +RKKL
Sbjct: 180 TE--LDSRVLDNHIKNIRKKL 198


>gi|295694966|ref|YP_003588204.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295410568|gb|ADG05060.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 234

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 8/146 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRAH+ VP++ ++        +     G DD V KP   RE++AR+ AI RR+  
Sbjct: 66  ELCKKIRAHTSVPILMLTAKAGETDRIRGLSLGADDYVTKPFSPRELVARIQAILRRVSP 125

Query: 122 SNNRAETGPIR----VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               A+T   R    V   GR  EV  +G + PL   E R+L  L  +  + + +  +  
Sbjct: 126 EELLADTVTFRNGELVIDAGRQ-EVYRKGVLVPLTPFEYRLLLTLARHPDRPLTREDLIL 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            + G FD   +   ++ HI  LR+K+
Sbjct: 185 KLGG-FDYEGDVRTIDQHIKNLRQKI 209


>gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
 gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
          Length = 243

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           L R +RA     P++ ++   SL   +     G DD V KP    E++ R+  I RR   
Sbjct: 77  LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGR 136

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + R +   I +  D R+   +GE+  L   E  +L Y M N G  ++K +I   
Sbjct: 137 GVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILDH 196

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           ++  +D   E  VVES++S LR+K+    G  P + + R +GY
Sbjct: 197 VWN-YDFGGEVGVVESYVSYLRRKVDT--GETPLIHTLRGVGY 236


>gi|222151944|ref|YP_002561104.1| hypothetical protein MCCL_1701 [Macrococcus caseolyticus JCSC5402]
 gi|222121073|dbj|BAH18408.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 219

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I+ H+   +I I+    L+  ++    G DD + KP +  E+LARV    R ++  ++  
Sbjct: 66  IKHHTNTKVIIITAKHELEHKVNLLTLGADDYITKPFYQEEVLARVMVQLRNIEKGSSLI 125

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               +++ ++ R+  +  +   L   E  IL  LM +    ++K +IF+A+ G      +
Sbjct: 126 THRALKLDTEKREVTLNDKGIQLTNSEFDILTILMKHPEVPLSKQKIFNAL-GNGTYVGD 184

Query: 187 ENVVESHISKLRKK 200
           +N V  H+S +RKK
Sbjct: 185 DNTVSVHVSNIRKK 198


>gi|212703723|ref|ZP_03311851.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098]
 gi|212672875|gb|EEB33358.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098]
          Length = 254

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 12/193 (6%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           E+L+   R   S I   ++  G   LEL R +RA S VP+I ++    +   +   + G 
Sbjct: 39  EFLEIQRRVPCSLIVMDIMLPGMNGLELFRNLRAESTVPVIFLTALGDITDRIVGLELGA 98

Query: 96  DDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQ------GEVF 147
           DD ++KP   RE+LAR+  + RR +     ++ ET P++      D   +      G V 
Sbjct: 99  DDYLSKPFEPRELLARIRTVLRRTEGGARRDQPETTPLQFAGWLLDRSARHLVAPDGVVV 158

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E R+LE  + N  + +++ ++     G  +    +  ++  IS+LR +LR+  G 
Sbjct: 159 SLSGTEYRLLEIFLQNPQRVLSRDELLERTQG-RNAVPYDRSIDVQISRLRTRLRDN-GR 216

Query: 208 DP--VDSKRFLGY 218
           +P  + + R  GY
Sbjct: 217 EPQLIKTVRGDGY 229


>gi|167836227|ref|ZP_02463110.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis MSMB43]
          Length = 233

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 76  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R +    RV + G   E++ ++ P    E R+L + M +  +  ++TQ+   ++G  D
Sbjct: 136 GLRLDPATHRVAAQGDGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 190

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 191 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|71906343|ref|YP_283930.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71845964|gb|AAZ45460.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 226

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ R IRA S VP++ ++        +   + G DD V KP   RE+ AR+ AI RR  
Sbjct: 61  IEVLRRIRAVSNVPVLMLTAKGDDMDRIVGLELGADDYVPKPCQPRELAARLRAILRRTT 120

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ ++     GP+ V+ + R  E  G    +   E  ++E L  N G+ V+K  +    
Sbjct: 121 LVEAASGPIVAGPLTVYPEQRRVEWGGAPVDMTSTEFNLVEVLARNAGRPVSKGLLCEQA 180

Query: 178 YG----LFDEAVEENVVESHISKLRKKLRN 203
            G     FD +     ++ H+S +R KL N
Sbjct: 181 LGRPLARFDRS-----IDVHLSSIRHKLGN 205


>gi|66046356|ref|YP_236197.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|302184957|ref|ZP_07261630.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|63257063|gb|AAY38159.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330954638|gb|EGH54898.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
 gi|330972829|gb|EGH72895.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 227

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129
            P++ IS    +   +    +G DD + KP    E+ ARV  + RR   +  +    +  
Sbjct: 74  TPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAAKTVLQVA 133

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +    R+    GE   L   E ++LE+LM N G+ + +  IF  ++G  FD     N
Sbjct: 134 DLELNLITREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHFDPGT--N 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ HI +LRKK+        + + R  GY I
Sbjct: 192 LIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 226

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 23/172 (13%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA  S VP+I ++    +   +   D+G DD V KP    E+LAR+ A  RR 
Sbjct: 62  LEICRRLRATGSTVPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRT 121

Query: 120 K-----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +           +S NR       VF + R  E+  + F L       LEYL+++  +  
Sbjct: 122 QETAEDLLQFEDLSLNRRTR---EVFREKRSIELTAKEFDL-------LEYLLSHPRQVF 171

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + QI   ++G +D   + N++E +I  LR KL        + + R +GY++
Sbjct: 172 TRDQILEKVWG-YDFMGDSNIIEVYIRYLRLKLEENNEKRLIHTVRGVGYAL 222


>gi|329849000|ref|ZP_08264028.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328844063|gb|EGF93632.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 234

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+  A  + P++ +S     +   +  + G DD + KP    E+ AR+ A+ RR   S
Sbjct: 66  ITRLRSAGVETPILMLSALSRSENRSEGLEGGADDYLGKPFEDHELTARIRALLRR---S 122

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N+  +     G I +    R    QG    L  +E  IL+ LM + G  V +  +   +
Sbjct: 123 RNQVHSAVMLYGDIELHVKSRTAHRQGVHLALSPKEFEILKLLMEHAGDIVTRDMLLKEV 182

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + L FD   + NV++ ++S+LR +L +      +++ R  G+ +
Sbjct: 183 WHLNFDP--QTNVIDVNMSRLRHRLEDDFATPCLETVRGAGFRL 224


>gi|326571623|gb|EGE21638.1| two-component system response regulator [Moraxella catarrhalis BC7]
          Length = 237

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L + R +RAH Q P++ ++        +   + G DD V KP+  R +LAR+ A+ 
Sbjct: 64  GSDGLAVCREVRAHYQQPILMLTARTDDMDQVLGLEMGADDYVAKPVQPRVLLARIRALL 123

Query: 117 RR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR        S  R E G + + + GR   +  E+      E  +L  L +N G+ +++ 
Sbjct: 124 RRSDTVPSDTSPQRLEFGDLVIDNGGRSVTLNDELVDFTSAEYDLLWLLASNAGRILSRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
            IF  + G+  +  ++  ++  IS++R     K+G D  + KR 
Sbjct: 184 DIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDSENPKRI 222


>gi|328542823|ref|YP_004302932.1| transcription regulator protein [polymorphum gilvum SL003B-26A1]
 gi|326412569|gb|ADZ69632.1| Putative transcription regulator protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 233

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 18/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD + ++D    +  D G  +    +        +    D+  ++  +   GE  L
Sbjct: 14  LLLVDDDSRIRDLLSRVLRDSGYRVTSAANAAEARRCMAGLEFDLLILDVMM--PGETGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  + VP++ ++        +   + G DD + KP   RE++ R+AAI RR   
Sbjct: 72  DLARTIRRENTVPILMLTARSDAADRIAGLEVGADDYLAKPFEPRELMLRIAAILRR--G 129

Query: 122 SNNRAETGP-IR----VFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFS 175
              R E  P IR    VF   R    +GE    L  RE++IL       G  V + +I  
Sbjct: 130 GQRRTERTPEIRFGPFVFIAERGELRRGEASIRLTDREKQILSIFAEQPGATVPRHKIVG 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSIDWN 223
                 D  + E  V+  I++LR+K+      +PV   + R +GY +  +
Sbjct: 190 D-----DSGLGERTVDVQINRLRRKIETDPS-NPVFLQTVRGIGYRLACD 233


>gi|289625552|ref|ZP_06458506.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289650888|ref|ZP_06482231.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487477|ref|ZP_07005521.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157992|gb|EFH99068.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866911|gb|EGH01620.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 227

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 6/152 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129
            P++ IS    +   +    +G DD + KP    E+ ARV  + RR   +       +  
Sbjct: 74  TPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAGKTVLQVA 133

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +    R+    GE   L   E ++LE+LM N G+ + +  IF  ++G  FD     N
Sbjct: 134 DLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHFDPGT--N 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ HI +LRKK+        + + R  GY I
Sbjct: 192 LIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|291285833|ref|YP_003502651.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str.
           CB9615]
 gi|209748784|gb|ACI72699.1| catabolic regulation response regulator [Escherichia coli]
 gi|290765706|gb|ADD59667.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str.
           CB9615]
 gi|320660297|gb|EFX27801.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 229

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+   +
Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDIV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +  V  +HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRTVY-THIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|212697066|ref|ZP_03305194.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675841|gb|EEB35448.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 240

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 13/184 (7%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88
           F + + +E L+    ED+  +   L+       +L + IR  S VP+I ++   S    +
Sbjct: 34  FQAFDGKEGLEIFESEDIDLVLLDLMIPKISGEDLIKEIRNKSNVPVIMVTAKVSEDDIV 93

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDGR---DPEVQ- 143
           +    G DD V KP   +E++ R+  + RR++  N  RA+   I   +DGR   D E   
Sbjct: 94  NGLKLGADDYVTKPFSPKELMQRIKTVLRRIEKYNIPRAD---IIKTTDGRLEMDLEYNR 150

Query: 144 ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
               GE   L + E +I++ L +N  K   + +I    +G FD    +  +++HI  +R+
Sbjct: 151 FFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEIIEITFG-FDYDAYDRAIDTHIKNIRQ 209

Query: 200 KLRN 203
           K+ +
Sbjct: 210 KIED 213


>gi|254421333|ref|ZP_05035051.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188822|gb|EDX83786.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 257

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 21/223 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDG----VSLEGFNSLEF-EEWLQSSARE-------DVSAIE 50
           +L++D  L+++       D+G    V+  G  +LE     ++ S  E       D+S I 
Sbjct: 21  LLVEDEELIRETVALSLADEGFEVCVADNGQRALEMILGGIERSGAEKPQPVAPDISLII 80

Query: 51  AFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
             L+  G   L+L R++R     +P++ +S   +    +   + G DD + KP   RE++
Sbjct: 81  LDLMLPGMNGLDLCRLVRHQGIDIPILILSAKGTETDRVLGLEVGADDYLTKPFGIRELI 140

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMAN 163
           AR  A+ RR +  +   E   +R F+D      +  VF       L  +E +ILE L++ 
Sbjct: 141 ARCRALLRRCQSQDKPNEKSILR-FADIALHTDECRVFLGSTEVSLSPKEFKILELLLSQ 199

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             +  ++ QI   ++G +D   +   V+ HI  LR+KL    G
Sbjct: 200 PKRVWSRNQIIDQVWG-YDFMGDNKTVDVHIRWLREKLEENPG 241


>gi|162139597|ref|YP_216033.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322714084|gb|EFZ05655.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 226

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 18  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 67  RTAHQSPAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + R +GY +
Sbjct: 185 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 225

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 14/212 (6%)

Query: 16  IALFGDDGVSLEG------FNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIR 68
           IA +   G+SLEG      F+ L+  E + S+   D+  ++  L +  G    E+ R IR
Sbjct: 13  IASYLRRGLSLEGYHVDVAFDGLQGLE-MASTGNYDLVVLDLMLPVIDG---FEVARRIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A S VP+I ++   +++  +   ++G DD + KP    E+LAR+ A  RR +   ++   
Sbjct: 69  AASNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRQQTYQHQEVL 128

Query: 129 GPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               +  D R  E  V      L  +E  +LE  M +  + + +  I+  ++  +D   E
Sbjct: 129 RFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDVIYDRVWN-YDFGGE 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            N++E ++  LR+KL        + + R +GY
Sbjct: 188 SNIIEVYVRYLRQKLEANGEPRLIHTVRSVGY 219


>gi|332876711|ref|ZP_08444469.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685270|gb|EGJ58109.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 232

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 5/149 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+ ++ + +R    +P+I ++   +    +  F  G DD ++KP   RE+  R+ A+ 
Sbjct: 62  GFKMAKMLKQVRETRDIPIIFLTARDTENDAVTGFTLGADDYISKPFSLREVQMRIKAVL 121

Query: 117 RRLKVSNN--RAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR         A  G   +++  + ++  + GE   L + E  IL  L+ N G+  ++ +
Sbjct: 122 RRTAPQQAVPAAYIGFKELKLDLNKKEAVLCGEALQLTKTEFEILRLLLENEGRVFSRAE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I   I+   D  V +  V+ +I++LRKKL
Sbjct: 182 ILRRIWN-NDAEVLDRTVDVNITRLRKKL 209


>gi|325924405|ref|ZP_08185939.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325545115|gb|EGD16435.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 233

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR     NR +   + 
Sbjct: 73  TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRR-----NRGQASEVV 127

Query: 133 -----VFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
                VF +     +  G    LP RE R+ E L+   G+ V K +I + ++G FD+   
Sbjct: 128 QIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAG 186

Query: 187 ENVVESHISKLRKKL 201
            N +E ++ +LR+KL
Sbjct: 187 PNAIELYVGRLRRKL 201


>gi|251779734|ref|ZP_04822654.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084049|gb|EES49939.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 224

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I  S        +   + G DD + KP     I+A+V A+ RR       +
Sbjct: 67  IRKISKVPIIFASSASDNMNLIMAINMGADDFIAKPFDLNVIVAKVQALIRR-----TYS 121

Query: 127 ETGPIRVF-SDGR-----DPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             G I +  S+G      D  +    +   L + E +IL+ L+ N+ K V++  I + ++
Sbjct: 122 FQGQINILESNGAVLNLGDTTIAYNNKKLELSKNEFKILQILLENKNKAVSRDDIMTHLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LR+KL +    D + +K+ +GY
Sbjct: 182 N-SDSFIDDNTLTVNVTRLRRKLEDINLKDFIKTKKGMGY 220


>gi|229845243|ref|ZP_04465376.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1]
 gi|229847329|ref|ZP_04467431.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1]
 gi|229809754|gb|EEP45478.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1]
 gi|229811838|gb|EEP47534.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1]
          Length = 221

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAET 128
           H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A I RR    ++  E 
Sbjct: 70  HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGHHHSVIEQ 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             +++  + R   +  +   L  RE ++LE  M N+ + +++T I   +   +DE +   
Sbjct: 130 SGVKLDQNQRFVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKLSS-WDEEISSG 188

Query: 189 VVESHISKLRKKL 201
            ++ HI  LR+KL
Sbjct: 189 ALDVHIYNLRQKL 201


>gi|256420270|ref|YP_003120923.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035178|gb|ACU58722.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 227

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 74/136 (54%), Gaps = 6/136 (4%)

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQ 143
           ++ +D  + G DD + KPI  + +++R+ A++RRL K  + + + G + +  +      +
Sbjct: 94  KSEIDGLNMGADDYIAKPIKPKLLVSRINALFRRLHKPEDTQVQLGDLIIDREKFTVTYK 153

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           G+   L ++E  +L+ L +  G+   + +I + ++G  +  V +  ++ HI    +K+R 
Sbjct: 154 GQEIILAKKEFELLQLLASKPGRVFLRNEILNQVWGT-EVIVGDRTIDVHI----RKIRQ 208

Query: 204 KLGFDPVDSKRFLGYS 219
           K+G D + + + +GY 
Sbjct: 209 KIGIDLITTVKGVGYK 224


>gi|225569206|ref|ZP_03778231.1| hypothetical protein CLOHYLEM_05288 [Clostridium hylemonae DSM
           15053]
 gi|225162005|gb|EEG74624.1| hypothetical protein CLOHYLEM_05288 [Clostridium hylemonae DSM
           15053]
          Length = 220

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR+ +  P++ ++              G DD + KP    E+ ARV A  RR        
Sbjct: 67  IRSGTDCPILFLTAKTGEGDITKGLGLGADDYITKPFGIGELRARVQAHLRRESRKRRHL 126

Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            T G ++     +     G+  P  + E  I EYL  ++G+  +K +I+  I+G +++  
Sbjct: 127 MTVGDMQFLPGEKKALCGGQEIPFTKSEYAICEYLALHQGQVFSKERIYEHIFG-YEKES 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   +  HI  +R K +   G  P+++   +GY
Sbjct: 186 DSTAITEHIKNIRAKCQPA-GISPIETVWGIGY 217


>gi|191637344|ref|YP_001986510.1| Putative lantibiotic resistance two-component response regulator
           [Lactobacillus casei BL23]
 gi|190711646|emb|CAQ65652.1| Putative lantibiotic resistance two-component response regulator
           [Lactobacillus casei BL23]
 gi|327381384|gb|AEA52860.1| Putative antibiotic transporter response regulator [Lactobacillus
           casei LC2W]
 gi|327384548|gb|AEA56022.1| Putative antibiotic transporter response regulator [Lactobacillus
           casei BD-II]
          Length = 232

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 4/155 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA + VP+I ++   + +  +    +G DD V KP    E+ AR+ A +RR      RA
Sbjct: 75  IRAITLVPIIFLTARVTDEDKVRGLGAGGDDYVTKPFSLAELGARIKAHFRRESQPQKRA 134

Query: 127 ETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                 ++  D R  +V    +V  L +++ +++E L  N G+  ++ Q++  I+G +D 
Sbjct: 135 RMAIFDQILIDYRAKQVSIGDQVLSLEKKQYQLVELLSLNPGQVFSREQLYEKIWG-YDA 193

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++ V+  HI ++R          P+++   +GY
Sbjct: 194 LGDDRVITEHIRRIRLLFDRYQVTSPIETVWGVGY 228


>gi|120401218|ref|YP_951047.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954036|gb|ABM11041.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 244

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 4/153 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           + +P+  +S   ++   +   ++G DD + KP    E++AR+ A+ RR   S+  ++T  
Sbjct: 89  NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHSDPTSDTMT 148

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++G +D  V+ 
Sbjct: 149 VGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVWG-YDFDVDT 207

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           NV +  +S LR+KL  +     + + R +GY +
Sbjct: 208 NVADVFVSYLRRKLEREGLPRVIHTVRGIGYVL 240


>gi|322390235|ref|ZP_08063766.1| transcriptional regulatory protein CpxR [Streptococcus
           parasanguinis ATCC 903]
 gi|321143097|gb|EFX38544.1| transcriptional regulatory protein CpxR [Streptococcus
           parasanguinis ATCC 903]
          Length = 232

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 18/210 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D   +++   +L  +D   L+ F+  E     Q  A  D+  ++  L GK G++V
Sbjct: 7   ILLIEDNNDIQEILYSLLSEDHEVLQAFSGTEGLRLFQQEAV-DLVLLDIMLPGKNGDQV 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE    IR  SQ P+I ++          +  +G +D + KP +  E+ ARV    R   
Sbjct: 66  LE---EIRLQSQTPVIMMTALGDKHLISQYLLAGANDYIVKPFNLDEVAARVTVQLRNQP 122

Query: 121 VSNNRAETGPIRVFSD-GRDPEV----QGE-VFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A++     F +   +PE      GE    L ++E +I E L+A+  K   K +++
Sbjct: 123 TVAKEAQSSQKLSFKNLVLNPETFELESGEQTLRLGKKEFQIFETLLAHPKKIFTKEELY 182

Query: 175 SAIYGLFDEAVE---ENVVESHISKLRKKL 201
            A++    E V    +N + + +S LRKK+
Sbjct: 183 EAVW----EEVYLPGDNTLNAQLSNLRKKI 208


>gi|302340283|ref|YP_003805489.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637468|gb|ADK82895.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 227

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 9/184 (4%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF++L+F   EE L    + +V  I   +   G          R  + VP++ I+   S
Sbjct: 20  EGFHTLDFGTAEEGLDYLKKNNVDIILVDINLPGMDGFMFISHARKLTSVPILIITARRS 79

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRD 139
               +     G DD + KP     ++AR+ A  RR +   N  E     GP   F D   
Sbjct: 80  DTDAVAGLGFGADDFITKPFSSEVLVARIRAFLRRAEGLENNNEKIITFGPFEFFPDDFV 139

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
            +  G+  PL   E R+L YL+   GK      I   ++   +E  +  VV  +I +LR+
Sbjct: 140 LKKDGDPIPLSNLECRLLAYLINRAGKYAKPEVIHKDVWK--NEFGDLTVVAVYIQRLRR 197

Query: 200 KLRN 203
           K+ +
Sbjct: 198 KIED 201


>gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076465|gb|ADJ65864.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 218

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 22/198 (11%)

Query: 36  EWLQSSAREDVS------AIEAFLIGKGEK-VLELPRIIRAH-SQVPLIGISDYPSLQTT 87
           +W+Q     DV+      A+    +G  +K  L + R +R   + +P++  +   ++   
Sbjct: 28  DWVQDGKSADVALRTEDYAMLLLDLGLPQKDGLAVLRTLRERGNAIPVLITTARDAVADR 87

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP-----EV 142
           +   D+G DD + KP    E+ AR+ A+ RR      RAE+  ++V     +P      V
Sbjct: 88  VAGLDAGADDYLIKPFDLEELSARMRALSRR---QAGRAES-LVQVREVILNPATHEVTV 143

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            G+   L  RE  +L+  M   G  +++ Q+   +YG +D+++E N VE HI  LRK   
Sbjct: 144 SGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG-WDDSIESNAVEVHIHALRK--- 199

Query: 203 NKLGFDPVDSKRFLGYSI 220
            K+G D + + R +GY +
Sbjct: 200 -KVGSDFIKNVRGVGYLV 216


>gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium intracellulare ATCC 13950]
          Length = 228

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 21/200 (10%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R+L  +GY      DGV      +LE    L +S R D   ++  +       LE+ R +
Sbjct: 18  RSLSFNGYSVELAHDGV-----EALE----LIASDRPDALVLDVMM--PRLDGLEVCRQL 66

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K   + A
Sbjct: 67  RSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK-PEDEA 125

Query: 127 ETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E+  ++ FSD     V  EV        L R E  +LE L+AN  + + +++I   ++G 
Sbjct: 126 ESVAMK-FSDLTLDPVTREVTRGERRISLTRTEFALLEMLIANPRRVLTRSRILEEVWG- 183

Query: 181 FDEAVEENVVESHISKLRKK 200
           FD     N +E ++  LR+K
Sbjct: 184 FDFPTSGNALEVYVGYLRRK 203


>gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 235

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 20/160 (12%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ + IR  +Q VP++ ++   + +  +   +SG DD + KP    E++ARV ++ RR 
Sbjct: 61  LDVCKEIRKTNQSVPILFLTALGTSENIVLGLESGGDDYLVKPFKFIELVARVKSLLRR- 119

Query: 120 KVSNNR-----AETGP----IRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANR 164
             SNN      AE  P    +  FSD       +     GE   L   E ++L Y + N 
Sbjct: 120 --SNNNGPQEIAEPEPDNEHVFQFSDLIVNDYTKKVTRGGEEISLTSTEYKLLLYFLNNP 177

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
            K +++ +I  A++G+  E +  NVV+ +++ LRKKL N+
Sbjct: 178 EKVISRAEILDAVWGVNYE-LGTNVVDVYVNYLRKKLDNQ 216


>gi|225387649|ref|ZP_03757413.1| hypothetical protein CLOSTASPAR_01419 [Clostridium asparagiforme
           DSM 15981]
 gi|225046265|gb|EEG56511.1| hypothetical protein CLOSTASPAR_01419 [Clostridium asparagiforme
           DSM 15981]
          Length = 117

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 3/113 (2%)

Query: 107 EILARVAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           E++ R+ A+ RR ++ N +R   GP+ +  D       GEV  LPR+E  +L  L++  G
Sbjct: 1   EMILRIKALLRRAQIVNEHRITLGPVVLDYDALTVSRGGEVQTLPRKEFYLLYKLLSYPG 60

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           K   + Q+   I+G+  E+ ++N +  H+++LR++      F  +++ R LGY
Sbjct: 61  KIFTRVQLMDEIWGMESES-DDNTINVHVNRLRRRFEGYPEFS-IETIRGLGY 111


>gi|126698221|ref|YP_001087118.1| two-component response regulator [Clostridium difficile 630]
 gi|255099750|ref|ZP_05328727.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|115249658|emb|CAJ67475.1| Two-component response regulator [Clostridium difficile]
          Length = 229

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 18/153 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR+ S VP+I  +   S    +   + G DD + KP    E+LAR+ A  RR  
Sbjct: 60  FEVLKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119

Query: 121 V-SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           V S++R     +  + D             G    L   E  I++ L  N+G+  +K Q+
Sbjct: 120 VYSSSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQL 179

Query: 174 FSAI-----YGLFDEAVEENVVESHISKLRKKL 201
           ++AI     YG       ENV+ +HI++LR KL
Sbjct: 180 YNAIWKEPYYG------NENVLNTHINRLRNKL 206


>gi|77745283|gb|ABB02542.1| response regulator [Lactobacillus reuteri]
          Length = 229

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 9/142 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           +R  S +P++ +S  P+    +    +G DD V KP +  E++ARV ++ RR +  V+N+
Sbjct: 67  VRKDSDIPILVLSAKPADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQGEVTND 126

Query: 125 RAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179
           +      GP+ +  D  + + ++G+V  L   E  IL YL+A+   RV +   IF  ++ 
Sbjct: 127 QPHILNVGPLLINKDSHEVKTIKGDVIQLTALEFGIL-YLLASHPNRVFSADDIFERVWQ 185

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             +  V    V  H+S LR K+
Sbjct: 186 Q-ESVVSAKTVMVHVSHLRDKI 206


>gi|34496017|ref|NP_900232.1| phosphate regulon transcriptional regulatory protein phoB
           [Chromobacterium violaceum ATCC 12472]
 gi|34101870|gb|AAQ58238.1| phosphate regulon transcriptional regulatory protein phoB
           [Chromobacterium violaceum ATCC 12472]
          Length = 229

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETG 129
            +P+I ++     Q  +   ++G DD + KP   RE+LAR+ A+ RR   +++++  +  
Sbjct: 76  HIPIIMLTARSDEQDKVAGLETGADDYITKPFSPRELLARIKAVLRRRAPQMTDDAVDVQ 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEEN 188
            +R+          G V  L   E R+L + M +  +  ++ Q+   ++G  D   VEE 
Sbjct: 136 GLRLDPVTHRVTGNGSVIELGPTEFRLLHFFMTHPERVHSRAQLLDQVWG--DHVFVEER 193

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            V+ HI +LR  L        + + R  GY
Sbjct: 194 TVDVHIRRLRSALEGTQHDGLIQTVRGTGY 223


>gi|117928813|ref|YP_873364.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649276|gb|ABK53378.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 230

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 11/145 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +++RA S+VP+I  +     +  +   D+G DD V KP     + AR+ A+ RR    
Sbjct: 65  LIQMVRAVSKVPIIVATARDDEREMVRILDAGADDYVVKPFASDHLEARIRAVLRRTAAD 124

Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI--- 177
                   G +R+    R+  + G    L R+E  +L YL  + G+ V K  I + +   
Sbjct: 125 GAMPPLVVGGLRIDRRSREATLDGRPLDLTRKEFDLLAYLAEHAGEVVTKRAILAEVWQQ 184

Query: 178 -YGLFDEAVEENVVESHISKLRKKL 201
            YG  D+      V+ H+S LR+KL
Sbjct: 185 AYGGADK-----TVDVHLSWLRRKL 204


>gi|168205030|ref|ZP_02631035.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168212345|ref|ZP_02637970.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170663408|gb|EDT16091.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170716198|gb|EDT28380.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 226

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 7/165 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S+VP+I ++   ++   +   D+G DD + KP    E+LAR+    ++ +
Sbjct: 61  LEVLRRIRRVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK-R 119

Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V   + +   IR         R   + G+    L  RE  +L+ LM N+   + +  +  
Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + G ++   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 180 KVCG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223


>gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR
 gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR
 gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis]
 gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909]
 gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU144]
 gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU028]
          Length = 233

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 32/219 (14%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D Y A  G+D V L       +EE        D+  ++  L G+    +E+ R +R   +
Sbjct: 28  DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKYE 73

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124
           +P+I ++   S    +   + G DD V KP   RE++ARV A  RR        +  + N
Sbjct: 74  MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQEVSGATN 133

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 I ++ D    + +GE   L  RE  +  YL  + G+ + +  +   ++G +D  
Sbjct: 134 EITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDYF 192

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 193 GDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227


>gi|147668757|ref|YP_001213575.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146269705|gb|ABQ16697.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 227

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)

Query: 67  IRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           IRA  S+VP++ ++        +   +SG D+ + KP H  E+L+RV  + RR  + +  
Sbjct: 68  IRAFSSEVPVLILTVTNDEHCIVRALESGADEYIIKPFHQLELLSRVKVLLRRRLMDSEE 127

Query: 126 A--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                GP R+        V      L   E+ I+ +L++N G  V  T +  AI+G  + 
Sbjct: 128 VAINVGPFRLSKYSNTLMVDNRRLILTNTEKIIMSHLLSNAGNLVPATLLAEAIWG-HNY 186

Query: 184 AVEENVVESHISKLRKKL 201
              ++ V  HI +LR+K+
Sbjct: 187 TNAKDAVRVHIWRLRRKV 204


>gi|330836364|ref|YP_004411005.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
 gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
          Length = 224

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 13/213 (6%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+      DG  LE  + LE       +++ D++ I+  L+       EL + +RA
Sbjct: 21  LQKEGFAVYEAADG--LEALSKLE-------TSKADLAIID--LMMPNMDGFELCQELRA 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128
              +P++ ++        +  F +G DD + KP    E++ARV A+ +R + +++   + 
Sbjct: 70  SYDIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALLKRYQIIASQNVQI 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +     +       F LP +E  +L  L    G+  ++  +   I+G   E   E 
Sbjct: 130 GKLMMNRKNYEVIAGNMKFTLPLKEFELLFKLAGYPGRTFSRDTLIEDIWGYGFEG-NER 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ HI++LR++   +     + + R LGY ++
Sbjct: 189 TLDVHINRLRQRFPEEKTDFRITTIRGLGYRLE 221


>gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S +P+I ++        +   + G DD + KP + RE++AR+ A+ RR      
Sbjct: 65  REIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATNPYT 124

Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +     G + +    R    +G+   L  +E  IL  L +N GK   K ++   I+G 
Sbjct: 125 KRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLIWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
           FD   + N V  H+ KLR+K+ +
Sbjct: 184 FDFYGDTNTVTVHVRKLREKIED 206


>gi|253581956|ref|ZP_04859180.1| transcription regulator [Fusobacterium varium ATCC 27725]
 gi|251836305|gb|EES64842.1| transcription regulator [Fusobacterium varium ATCC 27725]
          Length = 239

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 15/140 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK------VSNNRAETGPIRV-FSDGRDPEVQGEV 146
           G DD + KP   REI+AR+ A  RR++      ++N+  E     + + D +   ++  V
Sbjct: 98  GADDYITKPFSLREIIARINAFSRRIESEISIDLNNHSLENNENYIYYKDLKIDLIKNIV 157

Query: 147 FP------LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           +       L  RE ++L +L+ N+GK +++ +IF +++  ++   +   ++ HI KLR+K
Sbjct: 158 YKNNNPLELTIRELKLLIFLLTNKGKVISREKIFESVWN-YENNNQTRSLDVHIRKLRQK 216

Query: 201 LRNKLGFDPVDSKRFLGYSI 220
           L +K     +++ R  GY I
Sbjct: 217 LGDK-NNSYIETIRGTGYKI 235


>gi|239816306|ref|YP_002945216.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239802883|gb|ACS19950.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 221

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 4/160 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R+     ++P + ++   SL   +   ++G DD + KP    E+ AR+ A+ RR + V
Sbjct: 63  LQRLRERDQRLPALILTARDSLNERVASLNAGADDFLAKPFALAELEARLHALVRRARGV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + R   GP+      R   + GE   L  RE+ +L  L+   G+ ++K QI   ++   
Sbjct: 123 EHPRLACGPLAYDGARRQFVLGGEALALSPREQAVLRALVQRSGEPLSKQQILDRVFSDD 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE V    VE  + +LRK+L    G   V + R LGY ++
Sbjct: 183 DE-VHLEAVEVLVYRLRKRLDGS-GVRIV-TLRGLGYVLE 219


>gi|220907440|ref|YP_002482751.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219864051|gb|ACL44390.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 240

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +R+  Q  P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR 
Sbjct: 73  LEICQWVRSQRQATPILMLTAKDTLDERVQGLDAGADDYLVKPFELRELLARVRALLRRT 132

Query: 120 KVSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +   E+  +    D   D + Q     G    L  +E ++LEYLM    + ++  +I
Sbjct: 133 AAIDEPTESHKMLKVDDLELDSQNQLAYRRGRAINLSEKESQLLEYLMTRSQQLLSHEEI 192

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  ++   D+    NV+ + +  LR+K+
Sbjct: 193 YQHLWPGEDKP-SSNVLAAQVRLLRRKI 219


>gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
 gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
          Length = 228

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K  N   
Sbjct: 68  IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTPI 127

Query: 124 --NRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N++  E G + V +D     V+G+   L  +E  ILE L  N+G  ++  +I+  ++ 
Sbjct: 128 EYNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGSVLSVAKIYETVWK 187

Query: 180 -LFDEAVEENVVESHISKLRKKL 201
            +F ++  +N V  HI+K+R K+
Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208


>gi|152994709|ref|YP_001339544.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835633|gb|ABR69609.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 245

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 12/128 (9%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-----------LKVSNNRAETGPIRVFSDGRD 139
            + G DD VNKPIH R +LARV A+ RR             ++N++     +++    R 
Sbjct: 96  LEMGADDFVNKPIHPRVLLARVRALLRRDEKRANPLSPASTINNDQLIFDSLKINIGRRQ 155

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
            E+ GE+  L   E  +L  L +N  K V++ +I  ++ G+  + ++ + +++ I  LRK
Sbjct: 156 VELAGELIKLTETEFELLWLLASNPEKTVSRDEISQSLRGIEYDGLDRS-IDNKIVSLRK 214

Query: 200 KLRNKLGF 207
           KL +  G 
Sbjct: 215 KLGDSNGL 222


>gi|254975553|ref|ZP_05272025.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092941|ref|ZP_05322419.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314682|ref|ZP_05356265.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517356|ref|ZP_05385032.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650463|ref|ZP_05397365.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683573|ref|YP_003214858.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687233|ref|YP_003218367.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520433|ref|ZP_07406780.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260209736|emb|CBA63511.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213250|emb|CBE04771.1| two-component response regulator [Clostridium difficile R20291]
          Length = 223

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 34/237 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLI-GKGE 58
            ++I+D   + +G    F +DG ++  F +   +E L   +S   D   ++  L  G G 
Sbjct: 3   LLIIEDDINLNEGLFYAFENDGFNV--FKAYTKQEGLNIFNSKNIDFIILDCNLPDGDG- 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              ++ +IIR  S +P+I ++   S    +   + G+DD + KP     + ARV    R 
Sbjct: 60  --FDVCQIIREKSDIPIIMLTARDSEIDEVKGLEIGLDDYITKPFSLSVLKARVKVAIR- 116

Query: 119 LKVSNNRAETGPIRVFSDG--RDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKT 171
            K SNN+       ++S+G   D ++           L   E ++L YL+ N+G+ + K 
Sbjct: 117 -KKSNNKV------IYSNGIKLDQKLLKVYKNKACLELSSVEYKLLSYLIENKGQILLKE 169

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223
           QI   I+   +  V++N+V  +I +LR K+ +    DP + K       +GY   WN
Sbjct: 170 QILHHIWDSEENYVDDNIVSVNIRRLRVKVED----DPSNPKYIKTAYGMGYL--WN 220


>gi|116494703|ref|YP_806437.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116104853|gb|ABJ69995.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 225

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 12/159 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE VL     IR  S VP++ ++     Q T+     G +D + KP    E+LARV    
Sbjct: 59  GESVLT---TIRKTSSVPVLVLTAIQDKQKTVALLQQGANDYLTKPFDIDELLARVQVQL 115

Query: 117 RRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R++       + ++ + G I +        V      LP++E  +L  +M +  +   K 
Sbjct: 116 RQMLPAPSAKAQDQLQVGEITLNLKRHAVTVNNRPLTLPKKEYAMLALMMRDPHQVFDKQ 175

Query: 172 QIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           Q++  ++G  F  A  +N +  HIS LR K+ N L  DP
Sbjct: 176 QLYEHVWGEPFMNA--DNTLNVHISNLRTKI-NDLAKDP 211


>gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 225

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 11/219 (5%)

Query: 10  LVKD-GYIALFGDDGVSLEGFNSLEFEEWLQ--SSARE---DVSAIEAFLIG-KGEKVLE 62
           LV+D   +A F +  +  EG+N     + L   S+ARE   D+  ++  L G  G  + +
Sbjct: 8   LVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNARESDPDLILLDWMLPGMSGVDICK 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R+ +  + VP+I ++    +   +   D+G DD + KP +  E+LARV A  RR +  
Sbjct: 68  --RLRQTGNNVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNQQD 125

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  E   + + S+ R       +  L  +E  +LEYLM++  + + + QI   ++G +
Sbjct: 126 DPDLLEFLDLTLNSNTRQVFRGDRLIELTAKEFDLLEYLMSHPKQVLTRDQILERVWG-Y 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   + N++E ++  LR KL  +     + + R +GY +
Sbjct: 185 DFMGDSNIIEVYVRYLRLKLEAEKEKRIIQTVRGVGYVL 223


>gi|330982818|gb|EGH80921.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 137

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 12/135 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146
            D+G DD + KP    E+ ARV A+ RR   S  RA    E   I +    +    +G  
Sbjct: 8   LDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQPLLEHAGISLDPASQQVSFKGSE 64

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            P+   E ++L  LM   GK V + ++ + +YG  D+ VE N +E  I  LRKKL  +L 
Sbjct: 65  VPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYGWQDK-VESNTLEVLIHNLRKKLSTEL- 122

Query: 207 FDPVDSKRFLGYSID 221
              + + R +GY ++
Sbjct: 123 ---IRTVRGVGYLLE 134


>gi|271501164|ref|YP_003334189.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270344719|gb|ACZ77484.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 25/222 (11%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAI--EAFLIGK-GEKVLELP 64
           RAL + GY+     DG+           E L  + + D  AI  +  L GK G  VLE  
Sbjct: 18  RALSELGYMVDIAADGI-----------EGLHLAVQYDYDAIILDVMLPGKDGYSVLE-- 64

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
             +R H Q P++ +S   S+   +     G DD ++KP    E++AR+ A+ RR +VS+ 
Sbjct: 65  -GLRLHKQTPVLMLSARGSVDERVKGLRHGADDYLSKPFSLIELVARIQALLRR-RVSDG 122

Query: 124 ---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     + +    R     G+   L  +E  +L  L  ++G+ ++K  I   ++ +
Sbjct: 123 ADVTQLHIDDMHLDLLARRVTRAGQRLELTAKEFALLSLLARHQGEILSKMMIAEQVWDM 182

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   + NVVE  + +LR K+        + + R +GY ++
Sbjct: 183 NFDS--DANVVEVAVKRLRAKVDTPYTVKLLHTVRGMGYVLE 222


>gi|296137393|ref|YP_003644635.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295797515|gb|ADG32305.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 256

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 4/161 (2%)

Query: 45  DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D   ++  L G  G  VL   R+    +  P+I ++   +    +   +SG DD + KP+
Sbjct: 59  DACLLDWMLPGLSGPDVLCRLRLQLGANVPPVIFLTGRNAETDVVQALESGADDYLVKPL 118

Query: 104 HHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
               +LAR+ A+ RR    +   R   G I   S  R   V+GE   L  RE  +  + +
Sbjct: 119 SRPVLLARLQAVLRRSGSTLPAARLRLGEIEADSSRRQIFVRGERVELTDRETDLALHFL 178

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            N  + + +  +   I+GL  E VE   V+ H+S LR+KLR
Sbjct: 179 QNVNRLLTRDFLIQTIWGLRPE-VETRTVDVHVSALRRKLR 218


>gi|254563439|ref|YP_003070534.1| phoP: DNA-binding response regulator in two-component regulatory
           system with PhoQ [Methylobacterium extorquens DM4]
 gi|254270717|emb|CAX26722.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           DM4]
          Length = 221

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A   +P++ ++     +  ++  D+G DD + KP    E++AR+ AI RR    
Sbjct: 63  LRRLRGADVALPVLILTARDGWRERVEGIDAGADDYLVKPFRMEELVARLRAILRRTAGH 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + + +  R   V G    L   E R+L +L+  +G+ VA  ++   ++G  
Sbjct: 123 ASPVLRAGAVELDTRTRAVSVAGRETDLTALEYRLLAFLLHRQGQVVAAGELLDHLHG-S 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E N +E+ +++LR+    KLG   ++++R  GY +
Sbjct: 182 DSDREANALEALLTRLRR----KLGPGIIETRRGHGYLV 216


>gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 10/152 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSDVPIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLRRFQP 124

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   A         E   + V          G+   +P +E  +L +L ++  +   + Q
Sbjct: 125 AKPEAYASVDIKCVEYPGLIVNLSNYSVTYDGQQIDMPPKELELLYFLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +   I+G ++   +   V+ H+ +LR+K+++K
Sbjct: 185 LLDNIWG-YEYVGDTRTVDVHVKRLREKIKDK 215


>gi|254283288|ref|ZP_04958256.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR51-B]
 gi|219679491|gb|EED35840.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR51-B]
          Length = 236

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 3/151 (1%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++L   +   A   +P+I ++   +    +   + G DD + KP   RE++AR+ A
Sbjct: 60  GSGIELLRRLKRSEATRAIPVIMLTAKSAEDNVIQGLEVGADDYLTKPFAPRELVARIKA 119

Query: 115 IYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + RR +    N R     + + +DGR   +  +   +   E  +L + M +  +  +++Q
Sbjct: 120 LLRRSQGMEDNQRLAFEELLLDADGRRVYLADKPISMGPTEYNLLYFFMTHPERAYSRSQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G  +  VEE  V+ HI +LRK L++
Sbjct: 180 LLDHVWGA-NVYVEERTVDVHIRRLRKALQS 209


>gi|212635395|ref|YP_002311920.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212556879|gb|ACJ29333.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 234

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 15/158 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----E 127
           + P+I IS   + Q  ++ F+ G DD ++KP   RE+L R+ AI RR+ +  N +    E
Sbjct: 78  KTPVIVISSLDTEQDRVNVFELGADDFLSKPFSQRELLVRINAIKRRIALVRNESHLTDE 137

Query: 128 TGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ----IFSAIYGLFD 182
                +F D      +  +     + E ++ +YL   +G  VAK +    +     G FD
Sbjct: 138 LAMDVLFDDSSYSVSISAKEVSFTQTEFKLFKYLFERKGNVVAKDELQLRVLQKELGQFD 197

Query: 183 EAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
                  ++ HIS  R+KL   +L    +++ R  GYS
Sbjct: 198 RN-----LDMHISNTRRKLAATQLPKSLINTVRGKGYS 230


>gi|163853512|ref|YP_001641555.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218532370|ref|YP_002423186.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240140930|ref|YP_002965410.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
 gi|163665117|gb|ABY32484.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218524673|gb|ACK85258.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240010907|gb|ACS42133.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
          Length = 221

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A   +P++ ++     +  ++  D+G DD + KP    E++AR+ AI RR    
Sbjct: 63  LRRLRGADVALPVLILTARDGWRERVEGIDAGADDYLVKPFRMEELVARLRAILRRTAGH 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + + +  R   V G    L   E R+L +L+  +G+ VA  ++   ++G  
Sbjct: 123 ASPVLRAGAVELDTRTRAVSVAGRETDLTALEYRLLAFLLHRQGQVVAAGELLDHLHG-S 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E N +E+ +++LR+    KLG   ++++R  GY +
Sbjct: 182 DSDREANALEALLTRLRR----KLGPGIIETRRGHGYLV 216


>gi|315644732|ref|ZP_07897862.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315279882|gb|EFU43182.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 214

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 25/169 (14%)

Query: 61  LELPRIIR--AHSQVPLI---GISD--YPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           +E+ R I+   H++V L+   G +D  + +LQ       SG DD V KP   R +L R  
Sbjct: 60  IEVCRTIKQLGHTKVLLLTAKGEADDEFAALQ-------SGADDYVRKPFDPRILLLRA- 111

Query: 114 AIYRRLKVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              ++L   N +   G + V   + R    + +V     +E  +++Y +AN+G+ +++  
Sbjct: 112 ---KKLLHLNAKVVIGNVTVDLEEQRIYRGEQDVMA-THKEFELMKYFLANKGRILSRKM 167

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++G FD   +E  V++HI    ++LR K+G   + + R +GYS+D
Sbjct: 168 LLDHVWG-FDYFGDERTVDTHI----RRLREKIGESCIQTHRGMGYSLD 211


>gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  E G + V  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALEIGGVIVDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|255283760|ref|ZP_05348315.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
 gi|255265643|gb|EET58848.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 15/150 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA + +P++  +      + +    +G DD + KP    E++AR+ ++ RR    N   
Sbjct: 67  IRAENSLPILMFTSKNDSASKVRGLRAGADDYLTKPFDMDELIARIVSLIRRYTRFNQPG 126

Query: 127 ETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            T P ++  DG       R        F LP +E  IL +   N+GK + K +I+  ++G
Sbjct: 127 GT-PHQLHFDGLEIDLESRSVTTMNGTFELPPKEFDILLFCAKNQGKILTKQRIYEEVWG 185

Query: 180 ---LFDEAVEENVVESHISKLRKKLRNKLG 206
               +D++   N++ + IS+LRKK+    G
Sbjct: 186 GEYFYDDS---NIM-AIISRLRKKIEENPG 211


>gi|195978501|ref|YP_002123745.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225870885|ref|YP_002746832.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975206|gb|ACG62732.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700289|emb|CAW94550.1| response regulator protein [Streptococcus equi subsp. equi 4047]
          Length = 236

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                V+   A +G        +++  D    +  G+   L  RE  +L +L  + G+ +
Sbjct: 121 TIETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 214


>gi|182435528|ref|YP_001823247.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776165|ref|ZP_08235430.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464044|dbj|BAG18564.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656498|gb|EGE41344.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR     + A
Sbjct: 69  IRKRTATPVIMVTARADVRSRIHGLNLGADDYVTKPYDTGELLARIHAVARRTTSGEDTA 128

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            T       GP+ +    R   V G    L R+E  +L  L    G    + QI S ++ 
Sbjct: 129 PTPVAALRLGPVAIELPTRRVSVDGAEVQLTRKEFDLLALLAQRPGVVFRREQIISEVWR 188

Query: 180 LFDEAVEENVVESHISKLRKKLR 202
              E      +E H++ LR KLR
Sbjct: 189 TSWEGTGRT-LEVHVASLRSKLR 210


>gi|16331577|ref|NP_442305.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001644|dbj|BAA10375.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 57  GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   LEL R +R   S++P+I I+    ++  +   D+G DD + KP +  E  AR+   
Sbjct: 58  GMSGLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQ 117

Query: 116 YRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR   +++   +   +R     R+ +    +  L  +E  +L+YL+++  + + + QI 
Sbjct: 118 LRRTHTTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQIL 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   + N++E +I  LR KL        + + R +GY +
Sbjct: 178 ERVWG-YDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGYVL 222


>gi|89096518|ref|ZP_01169410.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088533|gb|EAR67642.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 17/164 (10%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R+IR+ S VP+I +S  D+P+    +     G DD V KP H   ++A++ AI RR+   
Sbjct: 67  RMIRSGSNVPIIFLSSRDHPT--DMVMSMQLGADDFVQKPFHFEVLIAKIQAILRRVYSY 124

Query: 123 NN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +      +   G    F  G      G V  L + E  IL+ L+  + K V + Q+ S+ 
Sbjct: 125 STDEVKLKTWCGAAIDFERGIVENETGRV-ELTKNEMFILKQLVEQKNKIVTRDQLISS- 182

Query: 178 YGLFDEA--VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
             L+D+   + +N +  +I++LRK+L +++G    +++K  +GY
Sbjct: 183 --LWDDKRFISDNTLTVNINRLRKRL-DEIGLGSFIETKVGMGY 223


>gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 238

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 32/219 (14%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D Y A  G+D V L       +EE        D+  ++  L G+    +E+ R +R   +
Sbjct: 33  DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKFE 78

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124
           +P+I ++   S    +   + G DD V KP   RE++ARV A  RR        +  ++N
Sbjct: 79  MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQEVNNASN 138

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 I ++ D    + +GE   L  RE  +  YL  + G+ + +  +   ++G +D  
Sbjct: 139 EITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDYF 197

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 198 GDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 232


>gi|297623124|ref|YP_003704558.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297164304|gb|ADI14015.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 101/218 (46%), Gaps = 7/218 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  +V++         G ++E   +LE E W   +  + V        G G + L 
Sbjct: 6   LVVEDEFVVRELIAFHLTQAGFTVEEVGTLE-EAWRSLTGVDAVVLDWMLPDGSGVEWLR 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R      ++P++ ++   S +  +   D+G DD + KP    E+ AR+ A+ RR +  
Sbjct: 65  RLRATVRGERLPVLMLTARASERDKVFGLDAGADDYLAKPFSSAELTARLRALLRRTE-P 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + GP+ +        + G    L RRE  +L +L A+ G+  ++T++   ++G  D
Sbjct: 124 QRVHKVGPLELDERLGVVTLNGRELSLTRREFELLAFLCASPGRVFSRTELLDRVWG-ED 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               E  V+ HI++LR      +G + +++ R  GY +
Sbjct: 183 FLGTERTVDQHIAQLRA----LVGAELIETVRGRGYRL 216


>gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
 gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
          Length = 243

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR  S  +P+I IS   S    +   + G DD + KP    E++ARV A++RR 
Sbjct: 67  LEICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQ 126

Query: 120 KV--SNNRAETGPIRVFSDGRDP---EV--QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    N R E G + V     DP   EV   G+   L  RE  +L +   + G+  ++  
Sbjct: 127 EAMSQNLRMEAGIVSVHGVEIDPLAREVRQHGKSIDLTPREFDLLYFFARHPGEVFSRQA 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   ++G   E   E+ V SHI++LR K+
Sbjct: 187 LLDQVWGYQHEGY-EHTVNSHINRLRTKI 214


>gi|262377412|ref|ZP_06070635.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262307642|gb|EEY88782.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 237

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 14/145 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I +S   + +  +   D+G +D V KP   +E++AR+  + R+     ++ 
Sbjct: 77  LRTWSHVPVIVLSVRANEEEKVKLLDAGANDYVTKPFSVQELMARIRVLLRQ-----HQH 131

Query: 127 ETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            T    +F DG        R   +  ++  L R+E ++L  L  N+G+ + + QI   ++
Sbjct: 132 STVDTAIFDDGVLKIDFSKRQVFLNQQLLSLTRKEYQLLNLLAKNKGQLITQPQILKELW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
           G   +  + + +   ++KLR KL +
Sbjct: 192 GPTHQE-DTHYLRILVAKLRVKLND 215


>gi|238020531|ref|ZP_04600957.1| hypothetical protein GCWU000324_00417 [Kingella oralis ATCC 51147]
 gi|237867511|gb|EEP68517.1| hypothetical protein GCWU000324_00417 [Kingella oralis ATCC 51147]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 24/171 (14%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +RA S++P+I ++        +   + G DD V KP   RE+LAR+ AI RR +
Sbjct: 63  LDVLKTVRAQSKIPVIMLTAKGDDIDRIIGLEMGADDYVPKPCQPRELLARINAILRRSQ 122

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  VS +   +G + +F   R   V   +  L   E  +LE LM + G+ V+K   
Sbjct: 123 QNPDANAVSASIVASG-VTLFPSKRQAMVGDSMLELTSTEFNLLEVLMRHAGQVVSKEN- 180

Query: 174 FSAIYGLFDEAVEENV------VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                 L  EA++  +      ++ HIS +R KL +      + + R LGY
Sbjct: 181 ------LSQEALDRKLAKFDRSIDVHISSIRHKLGDA---SLIQTVRGLGY 222


>gi|229506825|ref|ZP_04396334.1| DNA-binding response regulator [Vibrio cholerae BX 330286]
 gi|229510381|ref|ZP_04399861.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|229517488|ref|ZP_04406933.1| DNA-binding response regulator [Vibrio cholerae RC9]
 gi|229605298|ref|YP_002876002.1| DNA-binding response regulator [Vibrio cholerae MJ-1236]
 gi|229345524|gb|EEO10497.1| DNA-binding response regulator [Vibrio cholerae RC9]
 gi|229352826|gb|EEO17766.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|229357176|gb|EEO22094.1| DNA-binding response regulator [Vibrio cholerae BX 330286]
 gi|229371784|gb|ACQ62206.1| DNA-binding response regulator [Vibrio cholerae MJ-1236]
          Length = 247

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    +   +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 92  LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 148

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 149 SGSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 208

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE   +N +E HI  LRKKL + L    V + R +GY I+
Sbjct: 209 G-WDEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 246


>gi|255655908|ref|ZP_05401317.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296450670|ref|ZP_06892423.1| response regulator [Clostridium difficile NAP08]
 gi|296879213|ref|ZP_06903208.1| response regulator [Clostridium difficile NAP07]
 gi|296260514|gb|EFH07356.1| response regulator [Clostridium difficile NAP08]
 gi|296429756|gb|EFH15608.1| response regulator [Clostridium difficile NAP07]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 34/237 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLI-GKGE 58
            ++I+D   + +G    F +DG ++  F +   +E L   +S   D   ++  L  G G 
Sbjct: 3   LLIIEDDINLNEGLFYAFENDGFNV--FKAYTKQEGLNIFNSKNIDFIILDCNLPDGDGF 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            V +L   IR  S +P+I ++   S    +   + G+DD + KP     + ARV    R 
Sbjct: 61  DVCQL---IREKSDIPIIMLTARDSEIDEVKGLEIGLDDYITKPFSLSVLKARVKVAIR- 116

Query: 119 LKVSNNRAETGPIRVFSDG--RDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKT 171
            K SNN+       ++S+G   D ++           L   E ++L YL+ N+G+ + K 
Sbjct: 117 -KKSNNKV------IYSNGIKLDQKLLKVYKNKVCLELSSVEYKLLSYLIENKGQILLKE 169

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223
           QI   I+   +  V+EN+V  +I +LR K+ +    DP + K       +GY   WN
Sbjct: 170 QILHHIWDSEENYVDENIVSVNIRRLRVKVED----DPSNPKYIKTAYGMGYL--WN 220


>gi|197303231|ref|ZP_03168272.1| hypothetical protein RUMLAC_01954 [Ruminococcus lactaris ATCC
           29176]
 gi|197297657|gb|EDY32216.1| hypothetical protein RUMLAC_01954 [Ruminococcus lactaris ATCC
           29176]
          Length = 241

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 112/240 (46%), Gaps = 28/240 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            V+I+D  ++++    L  D G   E  +            R D+  ++  L G  G+ +
Sbjct: 4   IVIIEDDKILREELEILLNDSGYQAEILSDFTDAAAQVRQIRPDLVLLDIILPGANGQYI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R IR  S VP+I ++        +    SG DD V KP +   +L R+  I RR +
Sbjct: 64  L---RQIREKSDVPVIMLTSKDGEVEEIMSRSSGADDYVTKPYNPTILLLRIETILRRTE 120

Query: 121 VSNNRAE--TGPIR--------VFSDGRDPEVQ-----------GEVFPLPRRERRILEY 159
            +  ++E     +R        V  + +D E++           G+   L + E  IL  
Sbjct: 121 QTGRQSEQRASSVRGEKAEGEAVQEELQDEELRLNLLKSTVSYHGDEVVLSKNELAILHC 180

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           LM+ +G+ V++ ++   ++ +  E V++N +  +I++LRK+L  ++G  + ++++R  GY
Sbjct: 181 LMSRKGQIVSRDELMDHLWDM-SEFVDDNTLTVNINRLRKRL-AQIGLENKIETRRGQGY 238


>gi|170738271|ref|YP_001779531.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820459|gb|ACA95041.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 249

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 100/207 (48%), Gaps = 8/207 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            +L++D  + +   ++    +G  +E F N +E    L S    D+  ++  + G  G+K
Sbjct: 7   IMLLEDDRIQQTMLVSWLKAEGYQVEAFDNGIEARNHL-SDHWADLMILDWDVPGLSGDK 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   R  R+ S VP+I  + +   +  +   D+G DD + KP+     LAR+ A+ RR 
Sbjct: 66  LLSWVRG-RSRSTVPVIFQTVHSDEEEIVRILDTGADDFLIKPVDRIVFLARIRALLRRF 124

Query: 120 KVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + + +   R   G   +     +         +  +E  +L +L ++RG  V +  ++S 
Sbjct: 125 QTAGSERRRMNVGDYILDRANLNISRGATSHSIGAKEFDLLWHLASHRGIVVQRQDLYSV 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           ++G +D   +   V+ ++S+LR +L+N
Sbjct: 185 VWG-WDGGSQSRSVDMYVSRLRTRLKN 210


>gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
 gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP   RE++ARV A+ RR    N  +++   G I V  +       GE   L 
Sbjct: 99  GADDYITKPFSVREMIARVKAVLRRRTTINIESKSYILGNIVVDFEKHSLTKAGEKIELT 158

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +E  +LE L+ N+GK + +  +   I+G ++   E   V+ HI  LRKK+ +
Sbjct: 159 LKEFELLEVLIKNKGKVMTRDFLLDRIWG-YEYIGETRTVDVHIRHLRKKIED 210


>gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 237

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 11/170 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR  
Sbjct: 62  MEVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHA 121

Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +  + E          GP+ +  D    + +GE   L  RE  +L YL  + G+ + + 
Sbjct: 122 QTATQEEEESETNEIVVGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 HLLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 230


>gi|15674628|ref|NP_268802.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19745650|ref|NP_606786.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21909908|ref|NP_664176.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28896393|ref|NP_802743.1| two-component response regulator [Streptococcus pyogenes SSI-1]
 gi|50913815|ref|YP_059787.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|56808928|ref|ZP_00366636.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71903089|ref|YP_279892.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910248|ref|YP_281798.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94988065|ref|YP_596166.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94989945|ref|YP_598045.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94991951|ref|YP_600050.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94993851|ref|YP_601949.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|139474240|ref|YP_001128956.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209558999|ref|YP_002285471.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|306827822|ref|ZP_07461092.1| response regulator [Streptococcus pyogenes ATCC 10782]
 gi|13621741|gb|AAK33523.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19747781|gb|AAL97285.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21904096|gb|AAM78979.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28811644|dbj|BAC64576.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 gi|50902889|gb|AAT86604.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|71802184|gb|AAX71537.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71853030|gb|AAZ51053.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94541573|gb|ABF31622.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94543453|gb|ABF33501.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94545459|gb|ABF35506.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94547359|gb|ABF37405.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|134272487|emb|CAM30750.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209540200|gb|ACI60776.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|304429992|gb|EFM33031.1| response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 236

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                V+   A +G        +++  D    +  G+   L  RE  +L +L  + G+ +
Sbjct: 121 TIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 181 TREHLLEIVWG-YDYFGDVRTVDVTVRRLREKIED 214


>gi|325267975|ref|ZP_08134623.1| two component response regulator [Kingella denitrificans ATCC
           33394]
 gi|324980578|gb|EGC16242.1| two component response regulator [Kingella denitrificans ATCC
           33394]
          Length = 237

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 23/171 (13%)

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + R IR +  + P++ ++    L + L   D G DD V KP    E+LAR+ A+ RR 
Sbjct: 72  LSMLRHIRQNRNLTPVLIVTAQDDLDSRLSGLDGGADDYVVKPFDMAELLARIRAVLRR- 130

Query: 120 KVSNNRAETGPIRVFSDG---RDPEV-------QGEVFPLPRRERRILEYLMANRGKRVA 169
               +  +  P+   S+G    +P         Q E   L  +E  IL+ L++  G   +
Sbjct: 131 ----HHGQAAPL--ISNGVITLNPATYQVQLAGQEENISLSNKEFAILQALVSRAGTIHS 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +   IYG  DE VE N ++  I  LRK    K+G D + + R +G+ +
Sbjct: 185 RADLEDKIYGWGDE-VESNAIDFLIHSLRK----KIGKDLIKNIRGVGWLV 230


>gi|315652558|ref|ZP_07905539.1| response regulator [Eubacterium saburreum DSM 3986]
 gi|315485187|gb|EFU75588.1| response regulator [Eubacterium saburreum DSM 3986]
          Length = 250

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 19/212 (8%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DDR +V    I L G+     E   + + EE ++  A+  V   +  +I     V
Sbjct: 24  ILVCDDDREIVDAIKIYLSGE---GFEVIAAYDGEEAIKLMAKHKV---DLLIIDIMMPV 77

Query: 61  LELPRI---IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L+  R    IR +S +P+I +S        +   + G DD + KP +  E++ARV +  R
Sbjct: 78  LDGIRATMQIRENSTIPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLR 137

Query: 118 RLKVSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R K   N +   P RV         + ++  V GE+  L   E  IL  L  N GK  + 
Sbjct: 138 RYKKLGNMSMPEPQRVVVGDLEIDDETKEVVVAGELIKLTPIEYNILLLLAKNAGKVYSI 197

Query: 171 TQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201
            +I+  I+   +EA+  +N V  HI  +R+K+
Sbjct: 198 DEIYEQIWN--EEAIGADNTVAVHIRHIREKI 227


>gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 234

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 7/141 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           R+    SQ P++ ++   + +  +     G DD V KP    E++AR+ A+ RR      
Sbjct: 72  RLRGCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRRTAGDPY 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V   R     I +  +  +    GE   L   E ++L +LM N G+ ++K QI   ++  
Sbjct: 132 VPPPRLTFADIELDEESHEVWRGGEPIMLSPTEFKLLRFLMLNAGRVLSKGQILDHVW-- 189

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D    E +VES++S LR+K+
Sbjct: 190 -DHVRGEGIVESYVSALRRKI 209


>gi|294624402|ref|ZP_06703094.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601300|gb|EFF45345.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR +  ++   + G  
Sbjct: 73  TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQIGGF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              +      + G    LP RE R+ E L+   G+ V K +I + ++G FD+    N +E
Sbjct: 133 VFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LR+KL
Sbjct: 192 LYVGRLRRKL 201


>gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
 gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           L R +RA     P++ ++   SL   +     G DD V KP    E++ R+  I RR   
Sbjct: 69  LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGR 128

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + R +   I +  D R+   +GE+  L   E  +L Y M N G  ++K +I   
Sbjct: 129 GVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILDH 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           ++  +D   E  VVES++S LR+K+    G  P + + R +GY
Sbjct: 189 VWN-YDFGGEVGVVESYVSYLRRKVDT--GETPLIHTLRGVGY 228


>gi|256829868|ref|YP_003158596.1| winged helix family two component transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579044|gb|ACU90180.1| two component transcriptional regulator, winged helix family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 229

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 13/184 (7%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGIS 79
           +LE + ++  SA +  S + A      + VL           ++ + +R  S+VP+I +S
Sbjct: 22  NLELDGFMVLSATDGASGLAAVQANAPDLVLLDLGLPDIDGIKVCQTLRRDSEVPVIMLS 81

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD 139
              ++   L   + G DD + KP +  E+ AR+  + RR++ S          +  D R 
Sbjct: 82  ARDTVADKLLGLECGADDYLVKPFNALELSARIRTVLRRIRRSETATAQRNGNIILDYRS 141

Query: 140 PE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
            E  +QG    L R E  +LE  +A+ G+ + +  I S  +G          V+ H+ +L
Sbjct: 142 HEATIQGRQVRLTRTEFSLLELFVAHPGETLTRDFIQSQNWGDSKLYSHSRAVDVHVQRL 201

Query: 198 RKKL 201
           RKK+
Sbjct: 202 RKKI 205


>gi|217968684|ref|YP_002353918.1| two component transcriptional regulator PhoB, winged helix family
           [Thauera sp. MZ1T]
 gi|217506011|gb|ACK53022.1| two component transcriptional regulator PhoB, winged helix family
           [Thauera sp. MZ1T]
          Length = 236

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++   A     G  +   N  E  + +   A  D+  ++  L   G   +
Sbjct: 5   ILLVEDEPAIQELIAANLARAGHHVVRANDAESAQRIVREALPDLVLLDWML--PGASGV 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R +RA  +   +P+I ++     Q  +   + G DD V KP   RE++AR+ A+ RR
Sbjct: 63  EFARRLRADERTRDIPIIMLTARGEEQDKVTALEVGADDYVTKPFSPRELVARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + + +  E G +R+               L   E R+L +LM +  +  ++ Q+   
Sbjct: 123 RAPQTTEDVVELGGLRLDPATHRVSAGETALALGPTEFRLLHFLMTHPERVHSRAQLLDQ 182

Query: 177 IYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G  +F   VEE  V+ HI +LR  L        + + R  GY
Sbjct: 183 VWGDHVF---VEERTVDVHIRRLRCALEPSAHDALIQTVRGSGY 223


>gi|223935938|ref|ZP_03627853.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895539|gb|EEF61985.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 13/199 (6%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYP 82
           VS +G  +L     L S+   D   ++  L G+ G  VL   R  +  +Q P++ +S   
Sbjct: 29  VSHDGTEAL----LLASNTPFDAIVLDIMLPGRDGLSVLRQLR--QQKNQTPVLLLSARG 82

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSDGRDPE 141
            +   ++  ++G DD + KP    E++ARV +I RR     +   +   + + +  R  +
Sbjct: 83  EVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSNEPKSVLLQVADLTLDTITRQAQ 142

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             G  F L  RE R+LE+LM   G+   +  I   ++  +D     N+V+ +I +LR+K+
Sbjct: 143 RGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD-YDFDPGTNLVDVYIKRLREKV 201

Query: 202 RNKLGFDP--VDSKRFLGY 218
               GF+P  + + R +GY
Sbjct: 202 DE--GFEPKLLHTVRNVGY 218


>gi|167761180|ref|ZP_02433307.1| hypothetical protein CLOSCI_03585 [Clostridium scindens ATCC 35704]
 gi|167660846|gb|EDS04976.1| hypothetical protein CLOSCI_03585 [Clostridium scindens ATCC 35704]
          Length = 239

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 1/143 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R ++  +  P+I ++    +       D G DD + KP H   + +R+AA+ RRL  
Sbjct: 82  DFCRWVKEQADTPIIFLTVRDGVTDITRGLDMGADDYIIKPFHIAVLESRIAAVLRRLPE 141

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G I +  D     + GE   L   E R+L  L+ N+G+ + +  I   ++  
Sbjct: 142 DKQPVLVCGDISLNKDKMQGYLNGEPVTLTALEYRLLHILLENKGRTLPRNLILERLWDA 201

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
               V +N +   + +LRKKL +
Sbjct: 202 DGNFVNDNTLTVTMRRLRKKLND 224


>gi|220918235|ref|YP_002493539.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956089|gb|ACL66473.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 238

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 19/158 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA   VP+I ++        +   ++G DD + KP   RE+LAR+ A+ RR  
Sbjct: 68  LEVCRELRARLPVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRR-- 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKT 171
               R   GP R      D E+          G    L   E  +L  L    G+ + + 
Sbjct: 126 ---GRGSLGPPREVIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           Q+     G  DEA + + +++HIS    +LR+KLG DP
Sbjct: 183 QLLDLTKGSADEAFDRS-IDAHIS----RLRHKLGDDP 215


>gi|92118761|ref|YP_578490.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801655|gb|ABE64030.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 16/154 (10%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124
           +P++ ++    ++  ++   SG DD + KP    E++AR+ A+ RR        L++SN 
Sbjct: 73  IPILVLTARGGVEDRVNGLRSGADDYLVKPFAFDELVARLEALLRRPGQLLGSSLRLSNV 132

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             +T   +VF D + P+       L  RE  +LE LM  +G  V+K  +   I+GL  + 
Sbjct: 133 TFDTEGRQVFVDMK-PQ------NLSAREIAVLELLMRRKGSVVSKKLLEDQIFGLTGD- 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V  N VE ++ +LRK+L +      + + R +GY
Sbjct: 185 VASNAVEVYVHRLRKQLLDIGAKVRITTIRGVGY 218


>gi|325925213|ref|ZP_08186624.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325544380|gb|EGD15752.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 238

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 25/173 (14%)

Query: 51  AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           A L G+G +++            E+ R IR  S VP+I ++        +   D+G +D 
Sbjct: 48  ALLAGQGAELVVLDIGLPDRDGHEVLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDY 107

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150
           V KP   +E++AR+ ++ R+    +   E+    VF DG        R+  + GE  PL 
Sbjct: 108 VTKPFGVQELMARIRSLLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLHGEAVPLS 163

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           R+E  +L  L+ + G+ V + Q+   ++G   E  + + +   + KLR+KL++
Sbjct: 164 RKEYALLALLLKHAGRVVTQPQLLREVWGPTHEE-DTHYLRILVGKLRQKLQD 215


>gi|312871584|ref|ZP_07731676.1| putative response regulator protein GraR [Lactobacillus iners LEAF
           3008A-a]
 gi|311092809|gb|EFQ51161.1| putative response regulator protein GraR [Lactobacillus iners LEAF
           3008A-a]
          Length = 222

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 6/156 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  SQVP+I I+ +      +     G D+ + KPI     +A++ A+ RR    KV +
Sbjct: 66  IRQISQVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYDYKVGS 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +      +++       E +  V  L R E  ILE L   + K   +  I +  +   D 
Sbjct: 126 DSIMYDDLKLNLSVAHLEGKNFVLELTRTELLILEILFNFKNKIAKREDIINYCWQ-GDA 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            +++N +  +I++LRKKL+  +G+D  + +K+ +GY
Sbjct: 185 FIDDNTLAVNIARLRKKLKT-VGYDELIQTKKGIGY 219


>gi|218232892|ref|YP_002368310.1| transcriptional activator protein CopR [Bacillus cereus B4264]
 gi|218160849|gb|ACK60841.1| transcriptional activator protein CopR [Bacillus cereus B4264]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 82/168 (48%), Gaps = 13/168 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R++    ++P + ++        +   D G +D + KP     +LAR+  + RR  
Sbjct: 70  LEVARLVNQKKKIPYLLLTSRSEPLDIMQGLDMGAEDYITKPYDLTVLLARIRTVLRR-S 128

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            SN+ +       G I +        V+G+   L ++   +L Y + ++G+ ++K +++ 
Sbjct: 129 YSNDISNGGITRCGNIEINLLTHKVIVEGKHVHLTKQLFELLHYFIIHKGQIISKEELYK 188

Query: 176 AIYGLFD--EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G +D  E  E N +E +I    ++LRN L  D + + R  GY ++
Sbjct: 189 NIWG-YDPSELQETNTLEVNI----RRLRNSLDIDIIKTVRGKGYVLE 231


>gi|21244208|ref|NP_643790.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109847|gb|AAM38326.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR +  ++   + G  
Sbjct: 73  TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQIGGF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              +      + G    LP RE R+ E L+   G+ V K +I + ++G FD+    N +E
Sbjct: 133 VFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LR+KL
Sbjct: 192 LYVGRLRRKL 201


>gi|257485787|ref|ZP_05639828.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|302130309|ref|ZP_07256299.1| heavy metal response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|6045171|dbj|BAA85309.1| ORFR [Pseudomonas syringae]
 gi|331012883|gb|EGH92939.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122
           R+  A   VP++ ++    +   +   + G DD + KP    E+LARV  + RR   S  
Sbjct: 65  RLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGSSSLP 124

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
                + G ++V    R     G+   L  +E  +LE LM  +G+ ++K+ I S ++ + 
Sbjct: 125 VQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIASQVWDMN 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + NV+E  I +LR K+ +      + + R +GY +D
Sbjct: 185 FDS--DTNVIEVAIRRLRAKIDDDFEAKLLHTCRGMGYMLD 223


>gi|332828645|gb|EGK01341.1| hypothetical protein HMPREF9455_02369 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +++ ++   +I IS   SL   L   D G DD + KP H  E+ AR+ +I RR 
Sbjct: 60  LDIIRKLKSKNKDAGVIIISAKNSLDDKLTGLDIGADDYLTKPFHLSELNARIKSIIRRR 119

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K SN + +   + V  D R   V  +   L R+E  +L Y + N  K ++K  I   +
Sbjct: 120 GFKGSNEK-KFNELTVQFDNRRLFVNEKEVVLTRKEYDLLLYFIMNEDKVLSKEDIAEHL 178

Query: 178 YG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G  +   A   + + +HI  LRKKL +    D + +   +GY
Sbjct: 179 WGDDMSLTADSFDFIYNHIKNLRKKLIDNGCKDYIKTVYGIGY 221


>gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N   ++ E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSSKNEDGIIRIRSAEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKLGFDP-VDSKRFLGYSID 221
            LR KL   +  +  + +   +GY I+
Sbjct: 204 NLRDKLETGMNEEKFIHTVWGVGYKIE 230


>gi|296112612|ref|YP_003626550.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295920306|gb|ADG60657.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326560872|gb|EGE11237.1| two-component system response regulator [Moraxella catarrhalis
           7169]
 gi|326563890|gb|EGE14141.1| two-component system response regulator [Moraxella catarrhalis
           46P47B1]
 gi|326566562|gb|EGE16708.1| two-component system response regulator [Moraxella catarrhalis
           12P80B1]
 gi|326566899|gb|EGE17038.1| two-component system response regulator [Moraxella catarrhalis
           103P14B1]
 gi|326569771|gb|EGE19821.1| two-component system response regulator [Moraxella catarrhalis BC8]
 gi|326570802|gb|EGE20827.1| two-component system response regulator [Moraxella catarrhalis BC1]
 gi|326575098|gb|EGE25026.1| two-component system response regulator [Moraxella catarrhalis
           CO72]
 gi|326576816|gb|EGE26723.1| two-component system response regulator [Moraxella catarrhalis
           101P30B1]
 gi|326577731|gb|EGE27607.1| two-component system response regulator [Moraxella catarrhalis
           O35E]
          Length = 237

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L + R +RAH Q P++ ++        +   + G DD V KP+  R +LAR+ A+ 
Sbjct: 64  GSDGLAVCREVRAHYQQPILMLTARTDDMDQVLGLEMGADDYVAKPVQPRVLLARIRALL 123

Query: 117 RR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR        S  R E G + + + GR   +  E+      E  +L  L +N G+ +++ 
Sbjct: 124 RRSDTVPSDTSPQRLEFGDLVIDNGGRSVTLNDELVDFTSAEYDLLWLLASNAGRILSRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
            IF  + G+  +  ++  ++  IS++R     K+G D  + KR 
Sbjct: 184 DIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDSENPKRI 222


>gi|294085650|ref|YP_003552410.1| DNA-binding response regulator [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665225|gb|ADE40326.1| DNA-binding response regulator [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 221

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 26/213 (12%)

Query: 22  DGVSLEGFN-----SLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHS-QVP 74
           D  +L+G N     +++  E L+S    D+  ++  L  G G   L   R +R+    +P
Sbjct: 18  DHFTLQGHNADIAETVKLAEELRSLTHYDIMLLDIMLPDGDGRTFL---RSLRSQKISLP 74

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134
           +I ++    +   +D  D G DD + KP    E+ AR  A+ RR     +   T    VF
Sbjct: 75  IIVMTARSEVSDKVDLLDIGADDYIIKPFDFAELEARCRAVLRR-----HTGTTQTQLVF 129

Query: 135 SD-GRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
            D   +P       P     L  RE R+LE  M        K Q+   I+ +  E + EN
Sbjct: 130 GDIALNPLTAELQTPETSHMLRNRELRLLEIFMNAPDILFTKEQLTDRIFNI-SETISEN 188

Query: 189 VVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +E +I+++RKKL   +G +  + + R +GY +
Sbjct: 189 AIEVYIARVRKKL---VGCNVYIQTMRGIGYKL 218


>gi|255020668|ref|ZP_05292730.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969904|gb|EET27404.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus caldus ATCC 51756]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 18/170 (10%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R +R   S +P+I +S   +L+T ++  DSG DD + KP    E+LAR+  + RR 
Sbjct: 60  LDLLRELRERGSSLPVIILSARDALETRIEGLDSGADDYLVKPFASSELLARLRVLQRRQ 119

Query: 120 K------VSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  +SN +    P     + +G++ + Q     L +RE  +L  L++  G   ++ 
Sbjct: 120 GGSGQAILSNGKIHMDPASFEAWREGQEEQRQ----RLGQREFALLSTLLSRPGVIFSRQ 175

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +Y  + E VE N ++  I  LR+    KLG D + + R  G+ ++
Sbjct: 176 ELETRLYP-WGEEVESNSIDFLIHSLRR----KLGSDAIQNIRGAGWLVE 220


>gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K  N   
Sbjct: 68  IREEQTIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRHKKYNTDT 127

Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N  E   + + SD R   V+ +   L  +E  ILE L  N+G  ++  +I+ A++ 
Sbjct: 128 NKNKNTIEMVGLTINSDTRQVWVKNQEVRLTPKEFDILELLARNKGMVLSVEKIYEAVWK 187

Query: 180 LFDEAVEENVVESHISKLRKKL 201
                   NV+  HI+K+R K+
Sbjct: 188 EQFYKSNNNVM-VHITKIRDKI 208


>gi|78049167|ref|YP_365342.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037597|emb|CAJ25342.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR +  ++   + G  
Sbjct: 73  TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQIGGF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              +      + G    LP RE R+ E L+   G+ V K +I + ++G FD+    N +E
Sbjct: 133 VFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LR+KL
Sbjct: 192 LYVGRLRRKL 201


>gi|86147196|ref|ZP_01065512.1| transcriptional regulator [Vibrio sp. MED222]
 gi|218708119|ref|YP_002415740.1| DNA-binding response regulator PhoP [Vibrio splendidus LGP32]
 gi|85835080|gb|EAQ53222.1| transcriptional regulator [Vibrio sp. MED222]
 gi|218321138|emb|CAV17088.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ, PhoP [Vibrio splendidus LGP32]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 2/157 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           + +I R    VP++ ++   + Q  ++  +SG DD + KP    E+ AR+ A+ RR +  
Sbjct: 64  IKQIRRKEIAVPILILTARGNWQDKVEGLNSGADDYLTKPFQFEELHARLEALVRRNQGF 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S ++ +   + + +  +       +  L   E +I EYL+ +  + V+K QI  ++Y   
Sbjct: 124 SASQIKAQSLTLDTQAKRISYDDALIELTALEFQIFEYLIRHCLQIVSKQQIADSLYAQ- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            E V+ N +E  +S+LRKKL        + + R  GY
Sbjct: 183 GENVQLNNIEVIVSRLRKKLTQYTQAKLISTIRGQGY 219


>gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 239

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 22/198 (11%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQ 85
           EG   LE   W          A+   L+  G   LE+ R  RA ++  P+I  S   S  
Sbjct: 39  EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMTRYTPIIITSARSSEV 89

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDP--- 140
             +   + G DD + KP    E++ARV A+ RR+     ++R + G + V     DP   
Sbjct: 90  HRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRIDAGTLDVAGLAIDPIAR 149

Query: 141 --EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G    L  RE  +L +   + GK  ++  + +A++G   E   E+ V +HI++LR
Sbjct: 150 EASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLR 208

Query: 199 KKLRNKLGFDPVDSKRFL 216
            K+      DP +  R L
Sbjct: 209 AKIEA----DPAEPVRIL 222


>gi|304397248|ref|ZP_07379127.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308186446|ref|YP_003930577.1| Response regulator [Pantoea vagans C9-1]
 gi|304355397|gb|EFM19765.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308056956|gb|ADO09128.1| Response regulator [Pantoea vagans C9-1]
          Length = 222

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 2/149 (1%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIR 132
           P++ ++     Q  ++  ++G DD V KP H  E+ AR+ A+ RR     ++  +  P +
Sbjct: 74  PILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMRRNSGHASQIIDMAPFQ 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V    R+  V  E   L   E  I+E L+ N GK V+K  +   +Y    E  E + ++ 
Sbjct: 134 VDLSRRELTVNEEPVKLTAFEYTIVETLIRNAGKVVSKDSLMLQLYP-DAELRESHTIDV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +LRKK+      D + + R  GY  D
Sbjct: 193 LMGRLRKKILALHPTDVIATVRGQGYRFD 221


>gi|269103945|ref|ZP_06156642.1| transcriptional regulatory protein CpxR [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163843|gb|EEZ42339.1| transcriptional regulatory protein CpxR [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 229

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG------PIRVFSDGRDPEVQGEVF 147
           G DD + KP   RE+LAR+ AI RR +  +NR   G       I ++   ++   Q    
Sbjct: 93  GADDYLPKPFSDRELLARMRAILRRTQALDNRVTHGDTIDYQDITIYPGRQEAFCQNRAL 152

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKLRN 203
            +   E  +L Y + + GK ++K ++   + G     FD A     ++ H+S LRKKL  
Sbjct: 153 DVTGTELALLSYFIQHPGKIISKEELSLEVLGKRLAQFDRA-----IDMHVSNLRKKLPE 207

Query: 204 KLGFDP-VDSKRFLGY 218
           +L   P + + R  GY
Sbjct: 208 RLDDKPRIKTLRGKGY 223


>gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 241

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 7/145 (4%)

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +RA   + P + +S   S++  ++    G DD V KP    E++AR+  + RR   
Sbjct: 75  LLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRRSGF 134

Query: 122 SNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +   I       D E       G +  L   E  +L Y M N G  ++K +I   
Sbjct: 135 DATEKQASRITFADIELDDETHEVFKAGNLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++  +D   E NVVES++S LR+KL
Sbjct: 195 VWN-YDFGGEVNVVESYVSYLRRKL 218


>gi|253579017|ref|ZP_04856288.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849960|gb|EES77919.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 15/169 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S +P+I IS        ++  D+G DD + KP    E+LAR+    RRL 
Sbjct: 63  VEVIKKIRTWSNMPIIVISARSEDTDKIEALDAGADDYITKPFSVEELLARIRVTQRRLA 122

Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           V  +         E G +++        ++GE   L   E ++L  L  N GK +  T I
Sbjct: 123 VMQSGEQLESSVFENGGLKIDYTAGCTYLKGEELHLTPIEYKLLCLLSRNVGKVLTHTYI 182

Query: 174 FSAIYGLFDEAVEENVVES---HISKLRKKLR-NKLGFDPVDSKRFLGY 218
              I+G       +N V S    ++ LRKKL   K G   + +   +GY
Sbjct: 183 TQQIWG----RCSDNDVASLRVFMATLRKKLEPEKNGVQYIQTHIGIGY 227


>gi|268680710|ref|YP_003305141.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
 gi|268618741|gb|ACZ13106.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR+ S +P+I  S    L+  +   + G DD + KP   +E+ AR+ ++ RR K
Sbjct: 62  LEICKEIRSKSDIPIIISSARSDLEDKIVGLELGADDYLPKPYEPKELYARIMSVLRRYK 121

Query: 121 VSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            SNN  E  P  +++  +      QG    L   E  +L +L+      V++ ++  +  
Sbjct: 122 KSNNPHEETPMALQLKEESHTIFFQGTPLTLTPAEFDVLAHLIKKNNCVVSRAELLGSAL 181

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
            L +E  E   ++  IS++R KL
Sbjct: 182 SL-NEENESRSLDVLISRIRTKL 203


>gi|239631692|ref|ZP_04674723.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066264|ref|YP_003788287.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|239526157|gb|EEQ65158.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438671|gb|ADK18437.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE VL     IR  S VP++ ++     Q T+     G +D + KP    E+LARV    
Sbjct: 59  GESVLT---TIRKTSSVPVLVLTAIQDKQKTVALLQQGANDYLTKPFDIDELLARVQVQL 115

Query: 117 RR-LKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R+ L   + +A    + G I +        V  +   LP++E  +L  +M +  +   K 
Sbjct: 116 RQTLPAPSAKAQDHLQVGEITLNLKRHAVTVNNQPLTLPKKEYAMLALMMRDPHQVFDKQ 175

Query: 172 QIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           Q++  ++G  F  A  +N +  HIS LR K+ N L  DP
Sbjct: 176 QLYEQVWGEPFMNA--DNTLNVHISNLRTKI-NDLAKDP 211


>gi|218528425|ref|YP_002419241.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|218520728|gb|ACK81313.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R +R  +   P++ +S    +   +    +G DD + KP    E+LAR   + RR 
Sbjct: 60  LSLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRR 119

Query: 120 KVSNNRAETGPIRVFS---DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +  ++E    RV     D     V   G    L  RE R+LEYLM + G+ V +T + 
Sbjct: 120 TAATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLL 179

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++   FD   + NV++ H+S+LR K+        + + R  GY I
Sbjct: 180 EHVWDYHFDP--QTNVIDVHVSRLRAKIDRGFEHPMIHTVRGAGYVI 224


>gi|153954968|ref|YP_001395733.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855413|ref|YP_002472535.1| hypothetical protein CKR_2070 [Clostridium kluyveri NBRC 12016]
 gi|146347826|gb|EDK34362.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569137|dbj|BAH07121.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 9/145 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++     +  L  F  G D  V KP+  + ++A++ A+ RR    
Sbjct: 64  VCRELRKISNVPIIMLTARGEDEDQLLGFQLGTDSYVTKPVSPKILVAKIKALLRRTYYD 123

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +V +N  +   + +  +G + ++ GE   L  +E   L YL+ N+   +++ +I  A
Sbjct: 124 EINQVKDNTYD--GLFINEEGHEVKIDGENIYLSPKEFEFLCYLIKNKDIVLSREKILDA 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           I+G+ D   +   V++H+ +LR+KL
Sbjct: 182 IWGI-DYYGDLRTVDTHVKRLREKL 205


>gi|322383169|ref|ZP_08056991.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152712|gb|EFX45343.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 19/196 (9%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           DG+      DG+  EG N         S+ + D+  ++  L   G    E+ R IR  ++
Sbjct: 20  DGFETTIATDGI--EGLNQ-------ASTEKFDLILLDLML--PGIDGYEICRKIRGKTE 68

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRLK----VSNNR 125
           VP++ ++        +     G DD ++KP    E++ARV    A Y RL     V +  
Sbjct: 69  VPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYERLTTGSVVRSEE 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + GP+R+        +         +E  +L +L++N     +K Q++  I+G+ D   
Sbjct: 129 VQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLYERIWGM-DAIG 187

Query: 186 EENVVESHISKLRKKL 201
           +   V  HI++LR+K+
Sbjct: 188 DLKTVAVHINRLREKI 203


>gi|315657068|ref|ZP_07909953.1| phosphate regulon response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492460|gb|EFU82066.1| phosphate regulon response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 108/230 (46%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G +  GF   +++E+ ++        I   ++  G   
Sbjct: 1   MIYFVEDDLNIRDLVVYTLGSTGFTARGFA--DYQEFREAMMELLPEMILLDIMLPGVDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R IRA+ +   +P+I ++   +    +   D G DD + KP    E+++R+ A+ R
Sbjct: 59  IQILRRIRANPETKAIPVIMVTAKGAEFDKVKSLDLGADDYITKPFGMMELVSRIRAVLR 118

Query: 118 RL-KVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R+ ++++  AE       G I +        V+G    L  +E ++LE LM+  G   ++
Sbjct: 119 RVPRLTDPTAEDEEILTIGTIDLNLPRHTVAVEGREVKLTLKEYQLLEELMSQPGILFSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +I+G +        V+ HI  LRKKL        +++ R +GY I
Sbjct: 179 DKLLDSIWG-YSFHGGTRTVDVHIRTLRKKLGP--AAKHIETVRGVGYKI 225


>gi|257062967|ref|YP_003142639.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790620|gb|ACV21290.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 9/164 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R +R  +  P++ +S   S    +   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 66  ELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQM 125

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++      G I +       E       L  RE  +L  LM   GK  ++  +   
Sbjct: 126 DAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLRE 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
            +G ++   E   V++HI +LR KL    GFDP  +++ R  GY
Sbjct: 186 AWG-WEYITETKTVDTHIKRLRDKL-AAAGFDPGIIETVRGYGY 227


>gi|229158143|ref|ZP_04286211.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 4342]
 gi|228625305|gb|EEK82064.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 4342]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 121 VSNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +   E G +    D   DP     E  G+   L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATEEIGKVIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + I+   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLIWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|227535312|ref|ZP_03965361.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187046|gb|EEI67113.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 12/159 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE VL     IR  S VP++ ++     Q T+     G +D + KP    E+LARV    
Sbjct: 59  GESVLT---TIRKTSSVPVLVLTAIQDKQKTVALLQQGANDYLTKPFDIDELLARVQVQL 115

Query: 117 RRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R+        + +  + G I +        V  +   LP++E  +L  +M +  +   K 
Sbjct: 116 RQTLPAPSAKTQDHLQVGEITLNLKRHAVTVNNQPLTLPKKEYAMLALMMRDPHQVFDKQ 175

Query: 172 QIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           Q++  ++G  F  A  +N +  HIS LR K+ N L  DP
Sbjct: 176 QLYEQVWGEPFMNA--DNTLNVHISNLRTKI-NDLAKDP 211


>gi|225575180|ref|ZP_03783790.1| hypothetical protein RUMHYD_03269 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037588|gb|EEG47834.1| hypothetical protein RUMHYD_03269 [Blautia hydrogenotrophica DSM
           10507]
          Length = 238

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 7/178 (3%)

Query: 25  SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           +++ F S E  EW Q  A  D+  ++  L       L LP  ++   QVP+I ++   SL
Sbjct: 47  AIQAFTSKEALEWNQR-AELDLVLLDIMLPELDGYEL-LPYFMK--KQVPVIYLTAKDSL 102

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-FSDGRDPEVQ 143
              +     G DD V KP    E+LARV  + RR          G + V F+  +    Q
Sbjct: 103 MDKVKGLKLGADDYVTKPFESIELLARVETVLRRCGRQEKEFCLGEVTVNFAQRKVFRGQ 162

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             V  L  +E  +LE L+ N    +++ Q+    +G   E  E   V+ HI +LRKKL
Sbjct: 163 NPV-ELTAQEFALLEVLIRNCNLALSREQLLEQAWGYVYEG-ETRTVDIHIQRLRKKL 218


>gi|188994617|ref|YP_001928869.1| probable two component system response regulator [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594297|dbj|BAG33272.1| probable two component system response regulator [Porphyromonas
           gingivalis ATCC 33277]
          Length = 245

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 4/149 (2%)

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIR 132
           LI IS   +++  +   + G DD + KP H  E+ AR+  + RR K ++   E   G + 
Sbjct: 75  LIIISAKDAIEDKVQGIELGADDYLTKPFHLLELNARIKGLIRR-KTAHGAMEIKLGNVS 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF-DEAVEENVVE 191
           +  D  +  V+G    L R+E  IL +LM    + V K  +  A++G + D+A   + V 
Sbjct: 134 LVPDRFEVAVKGHPLELKRKEYDILYHLMTRPNRLVDKAALAEAVWGDYIDQADNYDFVY 193

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + I  LRK++ +      + S    GY +
Sbjct: 194 AQIKNLRKQMNDAGATIEIKSVYGFGYKL 222


>gi|160945120|ref|ZP_02092346.1| hypothetical protein FAEPRAM212_02639 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442851|gb|EDP19856.1| hypothetical protein FAEPRAM212_02639 [Faecalibacterium prausnitzii
           M21/2]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
           M  +++D A +++        +G  ++GF S E       +A  ++  ++  L G+ G  
Sbjct: 1   MIYIVEDDASIRELEQYALQSNGYEVQGFESAEPFWQAMRTAEPELVILDVMLPGEDGFS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  R   +  ++P+I ++   S   T+   D G DD + KP    E L+RV    RR 
Sbjct: 61  ILKKLRNTPSLRRLPIIMVTAKSSELDTVRGLDCGADDYIAKPFGIMEFLSRVRVALRRS 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V  +      I++ +      V      L  +E  +L  L+ N    V +  I   +
Sbjct: 121 APEVRPDVLAFHEIQLDNARHSVTVNSTPVELTYKEYCLLRLLLENTSLVVTRETILQVV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D +VE   V+ HI  LRKKL +   +  + + R +GY +
Sbjct: 181 WGT-DISVESRTVDMHIRTLRKKLGDAGRY--ICTVRKVGYKL 220


>gi|150007699|ref|YP_001302442.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256839960|ref|ZP_05545469.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|149936123|gb|ABR42820.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256738890|gb|EEU52215.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 9/135 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
             P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR   S N +    +
Sbjct: 74  HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRR---SGNESVHMAL 130

Query: 132 RVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           R      DP        G+V  L  +E R+LEY + N+G  +++  +   ++   D    
Sbjct: 131 RCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVWDK-DFDTN 189

Query: 187 ENVVESHISKLRKKL 201
            NVV+ +++ LR K+
Sbjct: 190 TNVVDVYVNYLRTKI 204


>gi|149371968|ref|ZP_01891287.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149355108|gb|EDM43669.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 239

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 10/134 (7%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
           FD+G DD + KPI  + +L++V A+ RR K S ++ +T    G I +  +     V    
Sbjct: 110 FDAGADDYITKPIKPKILLSKVKALLRRFK-SPSKVDTVVKIGNIIINREEYQVTVGKTE 168

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             LPR+E  +L  L +  GK   + +I   ++G  +  V    ++ HI    +KLR K+G
Sbjct: 169 LVLPRKEFELLSLLASKPGKVFKREEILDTVWG-NEVVVGGRTIDVHI----RKLREKIG 223

Query: 207 FDPVDSKRFLGYSI 220
            D   + + +GY I
Sbjct: 224 DDRFKTVKGVGYKI 237


>gi|145294404|ref|YP_001137225.1| hypothetical protein cgR_0359 [Corynebacterium glutamicum R]
 gi|140844324|dbj|BAF53323.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 222

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 30/225 (13%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRI 66
           D  IA F   G+  EGF     E   ++ AR      +  ++        G  +LE  R 
Sbjct: 10  DAGIADFIVRGLIREGFECEITESGAEAFARAHSGDFDLMVLDLGLPHMDGTDILEQLRN 69

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           ++    +P+I ++   +++  L   + G DD + KP    E+LAR+     +L+++ + A
Sbjct: 70  LQV--TLPIIVLTARTNIEDRLRTLEGGADDYMPKPFQFAELLARI-----KLRLAKHTA 122

Query: 127 ETGPI--RVFSDGRDPE---------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  P   RV  +G D E         + G    L RRE  +LE LM + G+ +++ Q+  
Sbjct: 123 QESPTDARVLRNG-DVELDLRTQRVLIDGSWHDLSRREVDLLETLMRHPGQILSRAQLLR 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ + D     NVV+ ++  LRK    K+G   +++ R  GY +
Sbjct: 182 LVWDM-DWDPGSNVVDVYVRALRK----KIGAHRIETVRGSGYRL 221


>gi|285017456|ref|YP_003375167.1| two-component system regulatory protein [Xanthomonas albilineans
           GPE PC73]
 gi|283472674|emb|CBA15179.1| probable two-component system regulatory protein [Xanthomonas
           albilineans]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 16/210 (7%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR--AHS 71
           G+   F  DGV+            L  +   +  AI   L   G   +E+ R +R  A  
Sbjct: 26  GHTVDFAADGVT-----------GLHLAVVHEFDAIVLDLNLPGMDGIEVCRKLRNEARK 74

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
           Q P++ ++   SL   L  FDSG DD + KP   +E+  R+ A+ RR K  + R   TG 
Sbjct: 75  QTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRRGKGVHTRVLVTGD 134

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +    D  +   Q ++  L     +IL+ LM      V + ++ + ++G  +E  + + +
Sbjct: 135 LEYNLDTLEVRRQSKLLQLNPTALKILQALMEASPAVVTRQELETRVWG--EELPDSDSL 192

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             HI  LR  +    G   + ++  +GY I
Sbjct: 193 RVHIHGLRAVVDKPFGVPMIQTRHGIGYRI 222


>gi|283787078|ref|YP_003366943.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282950532|emb|CBG90197.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLESGHYSLVVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLARIRQKKYTLPVLILTARDTLTDKISGLDVGADDYLVKPFALEELHARIRALLRR--- 118

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N+ E+    G + +    R     GE   L  +E  +L  LM   G  V +  +++ I
Sbjct: 119 HHNQGESELTVGDLTLNMGRRQVWKAGEELVLTPKEYALLSRLMLKAGSPVHREILYNDI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|253687608|ref|YP_003016798.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754186|gb|ACT12262.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 16/159 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I +S     Q  +D  D+G DD + KP    E+LAR+    RR   S+ 
Sbjct: 66  RDLRQWSSLPVIVLSARTDEQDKIDALDAGADDYLTKPFGIGELLARLRVALRR--HSHT 123

Query: 125 RAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ET     G I V    R     G+   L   E R+L  L+A+ GK + + Q+ + ++G
Sbjct: 124 QQETPLVSFGTITVDLLNRQVNRDGQELHLTPIEFRLLATLLASPGKVLTQRQLLTQVWG 183

Query: 180 LFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216
                   N VE SH  ++    LR KL  DP   +  L
Sbjct: 184 -------PNAVEHSHYLRIYMGHLRQKLESDPARPRHLL 215


>gi|196041892|ref|ZP_03109180.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027264|gb|EDX65883.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R + ++P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 68  LRKYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 128 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 187 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 222


>gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
          Length = 237

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 13/133 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           G DD V KP    E++AR+ A+ RR   L+  ++R +   + +  D  +    G    L 
Sbjct: 101 GGDDYVTKPFSLDEVVARIRAVLRRTQPLEEEDSRLKVDGLVLDDDAHEVFRGGREIDLS 160

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP- 209
             E ++L YLM N  + ++K QI   ++  +D   + ++VES+IS LR+K+ N    DP 
Sbjct: 161 PTEFKLLRYLMLNPNRVLSKAQILDHVWE-YDFNGDASIVESYISYLRRKIDN----DPE 215

Query: 210 ----VDSKRFLGY 218
               + +KR +GY
Sbjct: 216 QPSLIHTKRGVGY 228


>gi|167463992|ref|ZP_02329081.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 19/196 (9%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           DG+      DG+  EG N         S+ + D+  ++  L   G    E+ R IR  ++
Sbjct: 25  DGFETTIATDGI--EGLNQ-------ASTEKFDLILLDLML--PGIDGYEICRKIRGKTE 73

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRLK----VSNNR 125
           VP++ ++        +     G DD ++KP    E++ARV    A Y RL     V +  
Sbjct: 74  VPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYERLTTGSVVRSEE 133

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + GP+R+        +         +E  +L +L++N     +K Q++  I+G+ D   
Sbjct: 134 VQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLYERIWGM-DAIG 192

Query: 186 EENVVESHISKLRKKL 201
           +   V  HI++LR+K+
Sbjct: 193 DLKTVAVHINRLREKI 208


>gi|110833486|ref|YP_692345.1| two-component response regulatory protein [Alcanivorax borkumensis
           SK2]
 gi|110646597|emb|CAL16073.1| Probable two-component response regulatory protein [Alcanivorax
           borkumensis SK2]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR HS VP+I ++        L   + G DD + KP   RE++ARV A+ RR  
Sbjct: 61  MEVCKTIRQHSNVPIIMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLRRAN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRVAKT 171
             +      P +  S   D E    +   P+ ++RI         L  L    G+  ++ 
Sbjct: 121 PES------PEQEHSLQLDEERYEAILKQPQGQQRIGLTAIEFALLSTLSRQPGRIWSRD 174

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
           Q+   IY      V +  ++SHI KLR+KL   ++   D + S   +GY ++
Sbjct: 175 QLMDEIYNDH-RVVSDRTIDSHIRKLRRKLSDGDEQSHDWIGSVYGVGYRLE 225


>gi|2961074|gb|AAC05918.1| TctD [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 5/132 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            + G DD + KP    E+ AR+ A+ RR     +  +     +F D     +QG+   L 
Sbjct: 90  LNVGADDYLPKPFELEELDARLRALLRRSAGLVHEVQQLGELIFHDEGYFLLQGQPLALT 149

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP- 209
            RE+ +L  LM  R + V++ Q+F  ++ L DE   E+ +E +I +LRKKL+   G D  
Sbjct: 150 PREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEVSPES-IELYIHRLRKKLQ---GSDVR 205

Query: 210 VDSKRFLGYSID 221
           +   R LGY ++
Sbjct: 206 ITVLRGLGYVLE 217


>gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N    + E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNASSPKNEDGMIRIRSAEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|16126998|ref|NP_421562.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221235790|ref|YP_002518227.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13424362|gb|AAK24730.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220964963|gb|ACL96319.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  R +   P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ 
Sbjct: 59  GVSVLE--RWRRGNVTTPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRAL- 115

Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             L+ S   A      G +R+        V GE   L   E R+L Y++ ++G+ + +T+
Sbjct: 116 --LRRSAGHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMIMHQGRVIGRTE 173

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +Y   FD   + N +E  I +LRK    KLG D +++ R LGY +
Sbjct: 174 LVEHLYDQDFDR--DSNTIEVFIGRLRK----KLGADRIETVRGLGYRL 216


>gi|304321183|ref|YP_003854826.1| two component response regulatorT [Parvularcula bermudensis
           HTCC2503]
 gi|303300085|gb|ADM09684.1| two component response regulatorT [Parvularcula bermudensis
           HTCC2503]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 8/187 (4%)

Query: 38  LQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           +  S   D   I+  L G  G  +LE+ R   A  Q P + +S    +   +    +G D
Sbjct: 39  MAESGGYDAYVIDRMLPGIDGLTMLEMRR--SAGDQTPALFLSALGEVDDRVAGLKAGGD 96

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRER 154
           D + KP    E++ARV A+ RR   +N +     G + +    R     G+   L  RE 
Sbjct: 97  DYLVKPYAFSELIARVEALGRRRGPTNIQTTFTVGDLEMDVLTRTVRRAGKKVDLQPREF 156

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           R+LEYL+ +  + V +T +   ++   FD   + NV++ HIS+LR K+        + + 
Sbjct: 157 RLLEYLIRHSDQVVTRTMLLENVWEYHFDP--QTNVIDVHISRLRSKIDRDFDKPLLKTV 214

Query: 214 RFLGYSI 220
           R  GY++
Sbjct: 215 RGAGYTL 221


>gi|330447113|ref|ZP_08310763.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491304|dbj|GAA05260.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 26/232 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD     D  +     D + LEGF+ +E     Q   + D S+I+  L+     V+
Sbjct: 4   ILLVDD-----DVELTALLKDILELEGFDVVEANNGQQGLEKVD-SSIDLILLDVMMPVM 57

Query: 62  ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R +R     P++ ++        +   + G DD + KP   RE+LAR+ A+ RR
Sbjct: 58  NGTEMLRRLRESHTTPVMMLTAKGDEIDRILGLELGADDYLPKPFSDRELLARMRAVLRR 117

Query: 119 LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            + +N++A           I ++   ++     +   +   E  +L Y + + G+ VAK 
Sbjct: 118 TQGNNDKAANKADKLTYQDIVIYPGRQEVFCHDQAIEMTGTELALLSYFVQHPGQIVAKE 177

Query: 172 QIFSAIYG----LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            +   + G     FD A     ++ H+S +RKKL  +L   P + + R  GY
Sbjct: 178 TLSLEVLGKRLAQFDRA-----IDMHVSNIRKKLPERLDGKPRIKTLRGKGY 224


>gi|295092131|emb|CBK78238.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 13/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P++ ++      + +    +G DD + KP    E +ARV ++ RR    +   
Sbjct: 67  IREKSNIPILMLTAKSDSLSKVRGLRAGADDYLTKPFDVDEFVARVISLIRRSTQFSVID 126

Query: 127 ETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
           +T    V+       D      +   F LP +E  +L YL  N+GK + K QI+ A++  
Sbjct: 127 DTFGQLVYKGLEINLDEHSVTTEKGTFELPHKEFELLLYLARNQGKILTKKQIYEAVWNE 186

Query: 180 --LFDEAVEENVVESHISKLRKKL 201
              FD+A   N++   ISKLRKK+
Sbjct: 187 EYCFDDA---NIM-VMISKLRKKI 206


>gi|255013596|ref|ZP_05285722.1| two-component system response regulator [Bacteroides sp. 2_1_7]
 gi|262381792|ref|ZP_06074930.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298375645|ref|ZP_06985602.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
 gi|262296969|gb|EEY84899.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298268145|gb|EFI09801.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 9/135 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
             P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR   S N +    +
Sbjct: 74  HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRR---SGNESVHMAL 130

Query: 132 RVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           R      DP        G+V  L  +E R+LEY + N+G  +++  +   ++   D    
Sbjct: 131 RCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVWDK-DFDTN 189

Query: 187 ENVVESHISKLRKKL 201
            NVV+ +++ LR K+
Sbjct: 190 TNVVDVYVNYLRTKI 204


>gi|253579795|ref|ZP_04857063.1| two-component system response regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848794|gb|EES76756.1| two-component system response regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 17/146 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR    N +A
Sbjct: 67  IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 126

Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             G I+  +        + R        F LP +E  +L Y   ++GK + K QI+  ++
Sbjct: 127 --GAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 184

Query: 179 G---LFDEAVEENVVESHISKLRKKL 201
           G    +D++   N++ + IS+LRKKL
Sbjct: 185 GEEYFYDDS---NIM-AIISRLRKKL 206


>gi|228906400|ref|ZP_04070283.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228853216|gb|EEM97990.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 8/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNE 121

Query: 122 SNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  G   V+ + +    V  E   L   E  +L   + +    +++ Q+   I+GL
Sbjct: 122 HKQIQYHGI--VWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
            +   E+  ++SHI  LR KLR K  F P+D   K   G    W
Sbjct: 180 -NTNTEDRTIDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220


>gi|168704604|ref|ZP_02736881.1| phosphate regulon response regulator PhoB [Gemmata obscuriglobus
           UQM 2246]
          Length = 236

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 33/236 (13%)

Query: 1   MFVLIDDRALV--------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           + ++ D+R L         K+GY      DG  LEG    +       +A  DV  ++  
Sbjct: 6   ILIIEDERGLTQTLTWYFNKEGYEVTVSGDG--LEGLRKAQ-------TALPDVVLLDLN 56

Query: 53  LIGKGEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
           L   G   L++ R +RA  +   +P+I I+        +  +  G DD V KP +++ +L
Sbjct: 57  L--PGMNGLDVCRELRAGERTRDIPIIMITAKTDETDQVVGYSLGADDYVGKPFNNKILL 114

Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV------QGEVFPLPRRERRILEYLMAN 163
            +V A+ RR   +  ++E G +  +S  +   V      + E   L   E R+LE L+  
Sbjct: 115 HKVKALLRR---AQGQSEPGDVTDYSGVKIDRVRHRVTFEEEALDLTPTEFRLLECLVRQ 171

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            G+  ++ Q+  A  G  +  V E  ++ HI  LR+KL    G  D +++ R +GY
Sbjct: 172 PGRAFSRKQLMEAAIG-DNSIVLERTIDVHIKTLRQKLTKAGGSADLIETVRSIGY 226


>gi|167745950|ref|ZP_02418077.1| hypothetical protein ANACAC_00645 [Anaerostipes caccae DSM 14662]
 gi|167654465|gb|EDR98594.1| hypothetical protein ANACAC_00645 [Anaerostipes caccae DSM 14662]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IRA+  +P+I +++    +  ++ FD G DD + KP   +E+  R+ A  R  + +
Sbjct: 69  LCRTIRANYSIPVIFLTNLTDEEIMIESFDCGGDDYITKPYLLKELEMRIRARIRNSRCT 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                T  + V ++ +   +      L   E  IL +LM ++G    + +I+ A++G  +
Sbjct: 129 VPSCRTPGLSVDNNEKQAYIGNLPLNLTVNEFEILSFLMDHKGIPYRQEEIYRAVWG--E 186

Query: 183 EAVEENVVESHISKLRKKLR 202
                + ++  I ++RKK++
Sbjct: 187 SCYNTHSIQILIMRIRKKIQ 206


>gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++  
Sbjct: 61  LEVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V+  + E     G + +               L  RE  +L+ LM N+   + ++ +   
Sbjct: 121 VTVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 181 VCG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|34496048|ref|NP_900263.1| two-component system response regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34101902|gb|AAQ58269.1| probable two-component system response regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 218

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 7/160 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LEL R  RA    VP+I I+    L   L   D G DD + KP    E+++RV A+ RR 
Sbjct: 60  LELLRAWRARQITVPVIMITASADLSDKLAGLDDGADDYLCKPFAVSEMVSRVRAVCRRS 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     G + +        + G    L  RE R+L  L  +  + V+KT +   + 
Sbjct: 120 ARQASEIWSLGALSLKPSAHLAWLDGSALDLSPREFRLLVELARDPSRIVSKTLLGQRLE 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            L D  V+   +E H+S LR+    K+G + + + R +GY
Sbjct: 180 PLGD-VVDGATIEVHLSNLRR----KIGAERIRTVRGVGY 214


>gi|78046368|ref|YP_362543.1| two-component system response regulator KdpE [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78034798|emb|CAJ22443.1| two-component system response regulator KdpE [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 238

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 25/173 (14%)

Query: 51  AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           A L G+G +++            E+ R IR  S VP+I ++        +   D+G +D 
Sbjct: 48  ALLAGQGAELVVLDIGLPDRDGHEVLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDY 107

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150
           V KP   +E++AR+ ++ R+    +   E+    VF DG        R+  + GE  PL 
Sbjct: 108 VTKPFGVQELMARIRSLLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLHGEAVPLS 163

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           R+E  +L  L+ + G+ V + Q+   ++G   E  + + +   + KLR+KL++
Sbjct: 164 RKEYALLALLLKHAGRVVTQPQLLREVWGPTHEE-DTHYLRILVGKLRQKLQD 215


>gi|332975278|gb|EGK12178.1| DNA-binding response regulator [Kingella kingae ATCC 23330]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 36/197 (18%)

Query: 47  SAIEAFLIGKGEKV------------LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           S ++  L G+G  V            L++ + +RA S++P+I ++        +   + G
Sbjct: 36  SGVQEILNGQGYDVVVLDSMMPKMNGLDVLKTVRAQSKIPVIMLTAKGDDIDRIIGLEMG 95

Query: 95  VDDVVNKPIHHREILARVAAIYRRLK-------VSNNRAETGPIRVFSDGRDPEVQGEVF 147
            DD V KP   RE+LAR+ AI RR +        SN+   +G + ++   R   +     
Sbjct: 96  ADDYVPKPCQPRELLARINAILRRSQQNTEASSTSNSIVASG-VTLYPSKRQATIGDTAL 154

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV------VESHISKLRKKL 201
            L   E  +LE LM + G+ V+K         L  EA++  +      ++ HIS +R KL
Sbjct: 155 ELTSTEFNLLEVLMRHAGQVVSKD-------ALSQEALDRKLAKFDRSIDVHISSIRHKL 207

Query: 202 RNKLGFDPVDSKRFLGY 218
            +      + + R LGY
Sbjct: 208 GDA---SLIQTVRGLGY 221


>gi|302671203|ref|YP_003831163.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395676|gb|ADL34581.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNN 124
           +R ++ +P+I IS   +    +   D G DD + KP +  E +ARV +  RR      + 
Sbjct: 68  MRKNNNIPVIIISARDTDPDKILGLDLGADDYMIKPFNPLEAVARVRSNLRRFHALKGDL 127

Query: 125 RAETGPIRVFSDGR-DPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + +TG I    D + D E      QGE   L   E +++E  M N GK   K +I+  ++
Sbjct: 128 QPQTGKIIELLDLKLDTEACILYRQGEKIELTSNELKMMELFMENPGKVFTKEKIYEYVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP---VDSKRFLGYSID 221
           G  D  V   V +++I     KLR+KL  DP   + + R LGY ++
Sbjct: 188 G--DTYV---VADNNIMVAISKLRSKLCDDPSAYIRTVRGLGYRME 228


>gi|289579246|ref|YP_003477873.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289528959|gb|ADD03311.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRR--- 119

Query: 122 SNNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +N+      +  F++            + +G V  L   E +IL++L+ N  +   + ++
Sbjct: 120 TNDDVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREEL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              + G FD    +  +++HI  LR+K+ +
Sbjct: 180 IEKVMG-FDYEGYDRTIDAHIKNLRQKIED 208


>gi|295689826|ref|YP_003593519.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295431729|gb|ADG10901.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 106/216 (49%), Gaps = 21/216 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAFLIGK--GEKVLEL 63
           R+LVK G+         +++ F++LE  +  W   S   DV  ++  ++G+  G  +L  
Sbjct: 18  RSLVKAGF---------TVDLFDTLEDGWHAW--RSVTYDVVILD-IMLGRENGLDLLAQ 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R     +QV ++  +   S+   +   + G DD + KP    E++AR+ A+ RR  ++ 
Sbjct: 66  ARAAGLRTQVLML--TALGSVDQRVQGLERGADDYLVKPFAIEELVARLRALGRRPDLTA 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G I      R+  V     PL R E  +LE  + +  + V K Q+  +++ L D+
Sbjct: 124 DVLRYGDIEYDQGAREICVGEARLPLSRGESIVLERFLRHPDRVVTKAQLGDSLHSL-DQ 182

Query: 184 AVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
              +N ++ H+ ++R+K+  +LG D  + + R LGY
Sbjct: 183 DYTDNSIQVHVHRVRRKM-AELGADVTIRALRGLGY 217


>gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 9/205 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++   + + EE L  +       I   ++       E
Sbjct: 6   LVVDDEKLIVKGIRFSLLQDGMEVDC--AYDGEEALNMAKANSYDMILLDVMLPKMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQAIREFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSPE 123

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +V ++  E G I++  D R   +      L  RE  +LE L+ N  K  ++  +   
Sbjct: 124 RAPQVQSSVIEKGDIKLDCDSRRLFINDNEINLTAREFELLEILIKNENKVYSRESLLKI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G  D   +   V+ H+ +LR+K+
Sbjct: 184 VWG-EDYPGDVRTVDVHVRRLREKI 207


>gi|228934444|ref|ZP_04097279.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825081|gb|EEM70878.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 245

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 88  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 147

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+ N G+ ++   I S ++G +
Sbjct: 148 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 206

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL + +    + + R +GY ++
Sbjct: 207 DFDGDGSTVHTHIKNLRAKLPDNI----IKTVRGVGYRLE 242


>gi|114797709|ref|YP_760024.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114737883|gb|ABI76008.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKP-IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD+G DD + KP I    +    A + R    S    E G + V +      V GE   L
Sbjct: 91  FDAGADDYLTKPFITEELLARLRALLRRAAGHSAATIECGKLMVDTRAARATVNGEPIKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L YLM ++G+ V +T++   IY   FD   + N +E  I +LR+    K+G D
Sbjct: 151 TAHEYRVLSYLMHHQGRVVPRTELVEHIYDQDFDR--DSNTIEVFIGRLRR----KIGQD 204

Query: 209 PVDSKRFLGYSI 220
            + ++R LGY +
Sbjct: 205 RIQTERGLGYRL 216


>gi|114799615|ref|YP_761818.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114739789|gb|ABI77914.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 15/210 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLI---GKG 57
            VLIDD  +V +     + D     + F S E  + +L S+  + VS +   L      G
Sbjct: 3   IVLIDDDRMVLETITLGWPDPADKFDTFESFEALKPFLYSADFQSVSCVILDLQLPDASG 62

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            +VL     IR  S VP+I +S +       D  + G+DD V KP   +E+ AR + + R
Sbjct: 63  SQVLAE---IRRLSDVPIIMLSGWGDADFRADIINRGIDDYVLKPASSKELHARASRLTR 119

Query: 118 RLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               G +    + R     G+V  L   E  +L+ L    GK V++  
Sbjct: 120 KASAQPLADLPAILTIGNVEYLQEDRALRRAGQVIELTHAEASLLDALAVAGGKPVSRND 179

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKL 201
           ++   +G  + +   E V+E++IS+LR KL
Sbjct: 180 LYFQSFGRPYKDG--EKVLETYISRLRHKL 207


>gi|325928496|ref|ZP_08189687.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325541213|gb|EGD12764.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 185

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 5/163 (3%)

Query: 61  LELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +E+ R +R  A  Q P++ ++   SL   L  FDSG DD + KP   +E+  R+ A+ RR
Sbjct: 20  IEVCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRR 79

Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            K  + R  ETG +    D  +   +G++  L     +IL+ LM      V + ++ + +
Sbjct: 80  GKGVHTRVLETGDLEYNLDTLEVRRRGKLLQLNPTALKILQALMEASPAVVTRQELETRV 139

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +E  + + +  HI  LR  +        + ++  +GY I
Sbjct: 140 WG--EELPDSDSLRVHIHGLRAVVDKPFDVPMIQTRHGIGYRI 180


>gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 245

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 6/140 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S VP++ ++     +  +  F+ G DD + KP    E++ARV +I RR++  + R 
Sbjct: 84  IRAQSDVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILRRVEGYSARR 143

Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               +RV     D       V+G    L   E  +L +L AN G+   +  +F  ++G +
Sbjct: 144 APPVVRVGELEIDEPRHRVSVRGSDVNLTPMEFELLYFLAANAGQVFDRETLFREVWG-Y 202

Query: 182 DEAVEENVVESHISKLRKKL 201
           +   E N+V+  + +LR+K+
Sbjct: 203 EYVGETNLVDVCVRRLREKV 222


>gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 252

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 17/172 (9%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+ +A   +P++ ++        +     G DD V KP    E++AR+ A+ RR    + 
Sbjct: 76  RLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHALDE 135

Query: 125 RAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +  D  +    G    L   E ++L YLM N  + ++K+QI   ++  
Sbjct: 136 EDDAVLNAGDLELDDDTHEVRRAGIYIDLSPTEFKLLRYLMLNANRVLSKSQILDHVWE- 194

Query: 181 FDEAVEENVVESHISKLRKKL----RNKLGFDPVD--------SKRFLGYSI 220
           +D   +  +VES+IS LR+K+          +P+D        +KR +GY +
Sbjct: 195 YDFGGDTGIVESYISYLRRKIDVAPETDEAGNPIDMEWTPMIQTKRGVGYML 246


>gi|291295420|ref|YP_003506818.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470379|gb|ADD27798.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 219

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 6/126 (4%)

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRER 154
           DD + KP    E++AR+ A+ RR ++     +  P + +  + R    QGE+  L  +E 
Sbjct: 97  DDYLPKPFALAELVARLKALGRRGEIKPQVLQISPQVELALEHRQVRRQGELVRLTAKEY 156

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
            +LE L  N+G+   + +I   I+G   EA + N+++ ++    K LR +LG D +++ R
Sbjct: 157 LVLELLALNKGRVFTREEILERIWGPGFEA-DSNLIDVYV----KNLRKRLGEDVIETVR 211

Query: 215 FLGYSI 220
            +GY +
Sbjct: 212 GVGYRL 217


>gi|251797128|ref|YP_003011859.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544754|gb|ACT01773.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + + A   +P++ ++    +   +   + G DD + KP   RE++ R+  I RRL 
Sbjct: 63  LDICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRLA 122

Query: 121 VSNNRA-ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +     E  P       I V    R    +GE   L  +E  +L  L+  RG+   + +
Sbjct: 123 QAQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRAE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  +++G +D   +   V++HI +LRKKL
Sbjct: 183 LLESVWG-YDFPGDMRTVDTHIQRLRKKL 210


>gi|182417343|ref|ZP_02948678.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237668463|ref|ZP_04528447.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378773|gb|EDT76295.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237656811|gb|EEP54367.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 23/207 (11%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R LVK        + G  +E FN+ E    L+    +    +   ++  G    E+ + I
Sbjct: 15  RYLVK----TFLENTGYEVEDFNNGEL--LLEKFQIKPCDMVILDVMMPGSDGFEICKKI 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDS---GVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R  S VP+I ++   +  T +D+      G DD   KP     ++ RV AI+RR++  +N
Sbjct: 69  REESIVPIIMLT---ARDTDIDYITGITLGSDDYFTKPFSPMSLVMRVKAIFRRIEFEHN 125

Query: 125 ----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       + G I +    +    + E   L   E  +L+YL  N  + V++ ++ 
Sbjct: 126 INIEKNIPISELKFGNITINLHNKIVTFKDENLDLTPNEYNLLKYLFENCERAVSREELL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             I+G +D  VE    +  + +LRKK+
Sbjct: 186 DKIWG-YDSEVETRAADDTVKRLRKKI 211


>gi|37523780|ref|NP_927157.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214785|dbj|BAC92152.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 611

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
           ++P++ ++   +    +   D+G DD V KP    E+ AR+ A+ RR   +     E GP
Sbjct: 72  RMPVLLLTGLDASTDKVAGLDAGADDYVVKPCDLSELAARIRALLRRGGAALPPVLEWGP 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +R+  +  +   QG+   L  +E  +LE  +   G+RV   +        F+E  EE+ V
Sbjct: 132 LRLDPNTCEVSYQGQPLHLTPKEYNLLELFLRG-GRRVYSRRAIVDHLWPFEEPPEEDTV 190

Query: 191 ESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++H+  LR KLR      D +++   LGY +
Sbjct: 191 KAHVKGLRHKLRAVGAPADLIETVYGLGYRL 221


>gi|47566630|ref|ZP_00237452.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47556660|gb|EAL14992.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR+ S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRSVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIQNAIVTKRGYGYAL 225


>gi|325478239|gb|EGC81358.1| putative cell cycle response regulator CtrA [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 222

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           + IR   + P+I ++   + +  +  F  G DD + KP     +LAR+ A   RL   N 
Sbjct: 69  KTIRDDIKTPIIILTAKNTKEDIMRGFGLGADDYITKPFDMDILLARIKARIGRL---NQ 125

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                  +   D      + E   +   E RIL++L  N+G  + K +I   I+   D +
Sbjct: 126 EIYYKKTKFDFDRFLITKECENVQMTSTEARILKFLYDNKGIFLTKEKILFNIFSSLDTS 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             E VV SHI  +R+KL      DP+++K  +GY
Sbjct: 186 --ERVVVSHIYNIRQKLLEINADDPIENKWKVGY 217


>gi|323485294|ref|ZP_08090643.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323694050|ref|ZP_08108232.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323401330|gb|EGA93679.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323501906|gb|EGB17786.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S+VP+I IS        +   + G DD + KP     + A+V A+ RR      ++
Sbjct: 67  IRAVSRVPVIFISSASDNLNIVMAMNMGGDDFIAKPFDLTVLTAKVQALLRRTYDFAGQS 126

Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G +    DG       E   L + E RIL  L+ ++GK V++  + + ++   D
Sbjct: 127 RLIEHRGAVFNCDDGT-LTFGSEKIELTKNEHRILMVLLESKGKIVSRDVLMTRLWE-SD 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V++N +  +I++LRKKL      D + +K+  GY I
Sbjct: 185 SYVDDNTLTVNITRLRKKLEQAGLSDFITTKKGSGYLI 222


>gi|319955614|ref|YP_004166881.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
 gi|319424274|gb|ADV51383.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 11/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR+    P+I ++        +   + G DD + KP   RE+LARV A+ RR  
Sbjct: 61  IEICKKIRSQKNTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVLRRTD 120

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +        S+  AE   I +  D R   +  +   L  +E  +L  + +N G+   +T 
Sbjct: 121 IKPIPQKDTSSILAEGLSIDI--DKRKVILNDKKIELSPKEFELLVLMASNPGRNYTRTD 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           + + I+G   E   E+ V SHI++LR K+ + + 
Sbjct: 179 LLNMIWGYNFEGY-EHTVNSHINRLRAKIESDMA 211


>gi|313144025|ref|ZP_07806218.1| two-component regulator [Helicobacter cinaedi CCUG 18818]
 gi|313129056|gb|EFR46673.1| two-component regulator [Helicobacter cinaedi CCUG 18818]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 13/152 (8%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ +S   S++  L  F  G DD V+KP +   +L R+ A  R    S    E   I
Sbjct: 69  RTPVVIMSSKSSVENELHAFKEGADDFVSKPFNAEVLLVRIQARLRFWGSSVIEIEDLVI 128

Query: 132 -----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
                ++   G++ EV+G+ F        +L +L  +R + V+K Q+  AI+    E V 
Sbjct: 129 NPDEEKITYKGQEIEVKGKPF-------EVLTHLARHRDQIVSKEQLLDAIWE-EPELVT 180

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            NV+E  I+++R+K+   L    +++ R  GY
Sbjct: 181 PNVIEVAINQIRQKMDKPLNIGTIETVRRRGY 212


>gi|311898734|dbj|BAJ31142.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 263

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 13/163 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----RLKVS 122
           IRA S VP+I ++    +++ +   + G DD V KP    E+LAR+ A+ R    R    
Sbjct: 69  IRAGSGVPVIMVTARADIRSRIHGLNLGADDYVVKPYDMGELLARIHAVARRGAPRAGED 128

Query: 123 NNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    TGP     + +  + R   V+G   PL R+E  +L  L  + G    + QIFS +
Sbjct: 129 SGPEPTGPLASRGVEIDRERRRVSVEGRDVPLTRKEFDLLALLAQSPGVVYRREQIFSEV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    E      +E H+  LR KL    G   V++ R +GY I
Sbjct: 189 WRSGWEG-NGRTLEVHVGSLRTKL-GLPGL--VEAVRGVGYRI 227


>gi|301310264|ref|ZP_07216203.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
 gi|300831838|gb|EFK62469.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 9/135 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
             P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR   S N +    +
Sbjct: 74  HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRR---SGNESVHMAL 130

Query: 132 RVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           R      DP        G+V  L  +E R+LEY + N+G  +++  +   ++   D    
Sbjct: 131 RCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVWDK-DFDTN 189

Query: 187 ENVVESHISKLRKKL 201
            NVV+ +++ LR K+
Sbjct: 190 TNVVDVYVNYLRTKI 204


>gi|300690245|ref|YP_003751240.1| response regulator, cheY family [Ralstonia solanacearum PSI07]
 gi|299077305|emb|CBJ49931.1| putative response regulator, CheY family [Ralstonia solanacearum
           PSI07]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 28/222 (12%)

Query: 8   RALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSS--AREDVSAIEAFLIGKGEKVLELP 64
           RAL + G++     DG++ E F  S EF+  +      R+D  A+ A +  + ++     
Sbjct: 18  RALAQSGFVVERAADGLAAEAFLASGEFDAVVLDLRLPRKDGFAVLADMRARDDRT---- 73

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
                    P++ ++   +L   +   ++G DD + KP    E+ AR+ A+ RR   S  
Sbjct: 74  ---------PVLILTAQGALDERVRGLNAGADDFLTKPFALSELEARLMALIRR---SRG 121

Query: 125 RA----ETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           RA      GP+  F  GR    + GE   L  RE   L  L+   G+ ++K  +F  ++ 
Sbjct: 122 RAFPRLRCGPLE-FDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDKVFN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L D     + VE  + +LRKKL    G   V + R LGY ++
Sbjct: 181 L-DSDSSPDAVEVVVHRLRKKLAGS-GVQIV-TVRGLGYLLE 219


>gi|293611083|ref|ZP_06693382.1| predicted protein [Acinetobacter sp. SH024]
 gi|292826735|gb|EFF85101.1| predicted protein [Acinetobacter sp. SH024]
 gi|325123407|gb|ADY82930.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter calcoaceticus PHEA-2]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+
Sbjct: 61  LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179
                 +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I   
Sbjct: 121 RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            FD  V + V++SHI  LR+K+
Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200


>gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 243

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 22/150 (14%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++      
Sbjct: 71  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKTSTSG 130

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   VSN R +T   +V+       + G  F L       LE L++  G+  ++++
Sbjct: 131 IPSSGVIAVSNLRIDTNKRQVYKGDERIRLTGMEFSL-------LELLVSRSGEAFSRSE 183

Query: 173 IFSAIYGLFDE-AVEENVVESHISKLRKKL 201
           I   ++G   E  V+  VV+ HIS+LR KL
Sbjct: 184 ILQEVWGYTPERHVDTRVVDVHISRLRAKL 213


>gi|306520551|ref|ZP_07406898.1| two-component system response regulator [Clostridium difficile
           QCD-32g58]
          Length = 210

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 11/146 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + ++IR  S VP+I ++        L  FD   DD + KP     ++ RV AI RR    
Sbjct: 64  VCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRR---- 119

Query: 123 NNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +N+       VF       +    E+ GE   L  +E  IL+ L+    + + +  +  +
Sbjct: 120 SNKTINDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDS 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202
           I+G +D   +  +V++HI  +RKK R
Sbjct: 180 IWG-YDYYGDTRIVDAHIKNIRKKYR 204


>gi|153956141|ref|YP_001396906.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856471|ref|YP_002473593.1| hypothetical protein CKR_3128 [Clostridium kluyveri NBRC 12016]
 gi|146348999|gb|EDK35535.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219570195|dbj|BAH08179.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           ++IR    +P+I IS        +   ++G DD + KP     +LA++ A+ RR  +   
Sbjct: 65  KLIRKQYSIPVIIISARSEDSDQIRGIENGADDYITKPFSIGVLLAKINAMLRRKAEYQK 124

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G + +  D      +     L + E R+L  LM N G+ V++ Q+      L+D+
Sbjct: 125 GGVSIGTLCLNEDTMRISYKEVGTELSKNEYRVLRLLMKNAGQIVSREQLLEE---LWDD 181

Query: 184 A--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
              V++N +  +I++++KKL  +LG  + + +KR +GY  D
Sbjct: 182 VSFVDDNTLTVNITRVKKKLM-ELGLQNCISTKRGVGYVFD 221


>gi|114797742|ref|YP_761056.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114737916|gb|ABI76041.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 220

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 7/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+ D   A   D G  ++     E + W +       + I    + + + +  
Sbjct: 4   LLVEDEVLIADDISAALKDSGFMVDLARDGE-DAWFKGDTEPYDAIILDLGLPRMDGLSV 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L R   A    P++ +S   S    +D  ++G DD + KP    E++ R+ A+ RR   +
Sbjct: 63  LKRWRAAGMITPILILSARGSWMERVDGIEAGADDYLPKPFEMAELIVRLRALIRRAAGM 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    + G + V +        G+   +   E R+++YL+ N  + V+  ++   ++G+ 
Sbjct: 123 AQPVLQAGDLMVDTRRMTIAYAGQPVRVTPLEFRLVDYLVHNMNRTVSAGELSEHLHGVE 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + N +E+ +S+LR+    KLG   + ++R  GY I+
Sbjct: 183 DTG-DTNAIEAIVSRLRR----KLGPGVISTRRGFGYVIE 217


>gi|127511031|ref|YP_001092228.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126636326|gb|ABO21969.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 108/224 (48%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A   +  +  F + G ++E  +       L +S + D+  ++  L    G K+
Sbjct: 3   ILLVEDDATTTEYVVKGFAEQGHNIETASDGHQGLLLATSMQYDLVILDRMLPQLDGLKL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R     +Q P++ +S    +   +    +G DD + KP    E+L R   + +R  
Sbjct: 63  LAALRA--TGNQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGN 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  + E   G + +    R   + G    L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SAPAQTELKVGELVMELLTRKVTLAGSEILLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              FD     NV++ HI+KLR+K   +LGF + +++ R  GY +
Sbjct: 181 DYHFDP--RTNVIDVHIAKLRRKF-EELGFGELIETVRGAGYRL 221


>gi|47564389|ref|ZP_00235434.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558541|gb|EAL16864.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|330949891|gb|EGH50151.1| response regulator protein [Pseudomonas syringae Cit 7]
          Length = 220

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 20/203 (9%)

Query: 8   RALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           +AL ++GY   +  DG S L    S  F+  +       +S  E            L R+
Sbjct: 18  QALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGFEV-----------LRRL 66

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
             + S +P++ ++   + +  +   DSG DD + KP    E+ AR+ A+ RR   S  RA
Sbjct: 67  RHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRR---SAGRA 123

Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E   IR+    +          L  +E ++L  L++  G+ + + ++   +YG ++
Sbjct: 124 KVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG-WN 182

Query: 183 EAVEENVVESHISKLRKKLRNKL 205
           E  E N +E HI  LRKK  + L
Sbjct: 183 EEAESNTLEVHIHHLRKKFSSTL 205


>gi|331085187|ref|ZP_08334273.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407970|gb|EGG87460.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS-LQTTLDFFDSGVDDVVNK 101
           R D S I   L+      +++ + IR HS VPLI IS   S +  TL     G DD + K
Sbjct: 45  RTDFSMILLDLMIPKINGMDVMQHIREHSVVPLIIISAKDSEIDKTLGL-SLGADDYITK 103

Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRE 153
           P    E+LAR+ A  RR    +  +E  P R+         SD    +  G    L  +E
Sbjct: 104 PFSVVEVLARIKANIRRRNQYDQGSEDVPKRLTAGELVMNLSDYTLTK-SGRRVELTAKE 162

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201
             IL+ LM +  K   K QI++ ++   D  + +EN V  HIS+LR K+
Sbjct: 163 YEILKLLMQHPKKVYTKEQIYALVWK--DAYLGDENAVNVHISRLRNKI 209


>gi|296170765|ref|ZP_06852337.1| two component response regulator IrlR [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894580|gb|EFG74317.1| two component response regulator IrlR [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 222

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G    E+ R +RA +   P++ ++         D FD G DD + KP   R ++AR+ A+
Sbjct: 56  GHSGYEVLRRMRARNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRAL 115

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQI 173
            RR  V    A      +  D     VQ    P  L  RE  +LE+LM N+   V K  I
Sbjct: 116 VRR-GVPQRPAVLTAGSLLLDPARHSVQRGANPITLTPREFGVLEFLMRNKDMVVTKADI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++        +NVVE ++  LR+K+    G + +++ R +GY +
Sbjct: 175 LRNVWDAHYHG-PDNVVEVYVGYLRRKIDIPFGTNTIETIRGVGYRL 220


>gi|294083655|ref|YP_003550412.1| winged helix family two component transcriptional regulator
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663227|gb|ADE38328.1| two component transcriptional regulator, winged helix family
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 234

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R+IR H   +P++ +S    +   +    +G D  + KP    E++A + AI RR   
Sbjct: 62  LARLIRKHHLPMPILVVSGNSGIDDKIAALGAGADGYLTKPFDRYELMANLDAIIRRTNG 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++   T G + V       ++  +   L  +E RI+E+L   +G  ++K    + +YG 
Sbjct: 122 HSSAVVTAGNLTVDLSRNYAKIGDKQLNLTGKEFRIVEFLALRKGSVLSKDAFLNHLYGG 181

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
            DE  E  +++  + KLR+KL N
Sbjct: 182 IDEP-EPKIIDVFMCKLRRKLDN 203


>gi|262281095|ref|ZP_06058877.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|299768811|ref|YP_003730837.1| response regulator [Acinetobacter sp. DR1]
 gi|262257326|gb|EEY76062.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|298698899|gb|ADI89464.1| response regulator [Acinetobacter sp. DR1]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+
Sbjct: 61  LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179
                 +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I   
Sbjct: 121 RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            FD  V + V++SHI  LR+K+
Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200


>gi|261879166|ref|ZP_06005593.1| response regulator PhoB [Prevotella bergensis DSM 17361]
 gi|270334265|gb|EFA45051.1| response regulator PhoB [Prevotella bergensis DSM 17361]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 11/140 (7%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A + +P+I ++   +   T+  F+ G DD ++KP   RE+L RV A+ RR   +++R   
Sbjct: 77  ATANIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRVRAVIRR---TDDRDHE 133

Query: 129 GP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            P       + +  D +   V GE     + E  +L +L+  +G+  ++ ++   I+   
Sbjct: 134 QPTVLRYQGLEMNLDKKTVTVDGEPVAFTKTEFELLRFLLDEKGRVFSRQELIDRIWPK- 192

Query: 182 DEAVEENVVESHISKLRKKL 201
           D  V +  V+ +I++LRKK+
Sbjct: 193 DVLVLDRTVDVNITRLRKKI 212


>gi|302554583|ref|ZP_07306925.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472201|gb|EFL35294.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 10/160 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR    +  +
Sbjct: 68  IRKRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRTSHEDTSS 127

Query: 127 --ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ET    GP+ +    R   V G V  L R+E  +L  L    G    + QI S ++  
Sbjct: 128 GIETELRLGPVHIELPTRRVSVDGAVIQLTRKEFDLLALLAQRPGVVFRREQIISEVWRT 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E      +E H++ LR KLR     + V   R +GY +
Sbjct: 188 SWEGTGRT-LEVHVASLRAKLRMPALIETV---RGVGYRL 223


>gi|240948578|ref|ZP_04752951.1| transcriptional regulatory protein [Actinobacillus minor NM305]
 gi|240297086|gb|EER47657.1| transcriptional regulatory protein [Actinobacillus minor NM305]
          Length = 221

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 8/138 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           + +   P++ ++   +L   +  F++G DD + KP    E++ R+ A+ RR   S+ +  
Sbjct: 68  KENQHTPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRR---SHQQVS 124

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G + + S  R   + GE   L  +E R+LE    ++ + + +T I   +Y  +D 
Sbjct: 125 SEIVIGDLVIDSHTRSVSLDGEDIALTAKEFRLLELFAHHKDRVLPRTLIEEKLYS-WDN 183

Query: 184 AVEENVVESHISKLRKKL 201
            V  N +E +I  LRKKL
Sbjct: 184 EVSSNALEVYIHNLRKKL 201


>gi|228908986|ref|ZP_04072816.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228850708|gb|EEM95532.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 67  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 127 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 186 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|229032183|ref|ZP_04188158.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1271]
 gi|228729140|gb|EEL80141.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1271]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G+   L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           S ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 SLVWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|229060825|ref|ZP_04198180.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228718472|gb|EEL70104.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|219855228|ref|YP_002472350.1| hypothetical protein CKR_1885 [Clostridium kluyveri NBRC 12016]
 gi|219568952|dbj|BAH06936.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 5/166 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ R +R  S++P+I ++    +   +   D G +D + KP    E+LAR+  +++   
Sbjct: 66  MEVLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKS 125

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 NN    G +++         +     L ++E  +L+YLM N+   +++  I   
Sbjct: 126 NNNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEK 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G +D   + N+V+ +I  LR K+ +K     + + R LGY   +
Sbjct: 186 VWG-YDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQFRY 230


>gi|165868373|ref|ZP_02213033.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|164715099|gb|EDR20616.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 67  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 127 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 186 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|221065234|ref|ZP_03541339.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220710257|gb|EED65625.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 219

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 43/238 (18%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS----AIEAFLIGKG 57
            +L++D  ++     AL   +G  ++         W+Q  AR D +      +  L+  G
Sbjct: 3   LLLVEDDTMIGQAVQALLRGEGYVVD---------WVQDGARADTALRGHQYDLVLLDLG 53

Query: 58  ---EKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL---- 109
                 L++ R +RA     P++  +    ++  +   D+G DD V KP    E+L    
Sbjct: 54  LPEMDGLQVLRQLRARKDATPVLVATARDGVRDRIAGLDAGADDYVIKPYDMDELLARIR 113

Query: 110 -------ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
                    + A+Y          E G I +  + R+  V G+   L  RE  +L+ L+A
Sbjct: 114 ALARRAAGHLEAVY----------EHGGIMLNPNTREASVNGQPVTLSGREWAVLQALLA 163

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             G  +++ Q+   +YG  DE V  N VE +I  LRK    KLG   V + R LGY +
Sbjct: 164 RPGATLSRQQLEDKLYGWGDE-VSSNAVEVYIHGLRK----KLGAAAVLNVRGLGYMV 216


>gi|107022380|ref|YP_620707.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|115351235|ref|YP_773074.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|116689327|ref|YP_834950.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|134295368|ref|YP_001119103.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|170697960|ref|ZP_02889043.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170732626|ref|YP_001764573.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|171318223|ref|ZP_02907386.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172060249|ref|YP_001807901.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|206559652|ref|YP_002230413.1| phosphate regulon two-component regulatory system response
           regulator protein [Burkholderia cenocepacia J2315]
 gi|105892569|gb|ABF75734.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|115281223|gb|ABI86740.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|116647416|gb|ABK08057.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|134138525|gb|ABO54268.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
 gi|169815868|gb|ACA90451.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
 gi|170137126|gb|EDT05371.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171096567|gb|EDT41461.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171992766|gb|ACB63685.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
 gi|198035690|emb|CAR51577.1| phosphate regulon two-component regulatory system, response
           regulator protein [Burkholderia cenocepacia J2315]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 76  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R +    RV + G   E++ ++ P    E R+L + M +  +  ++TQ+   ++G  D
Sbjct: 136 GLRLDPATHRVAAHGDGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 190

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 191 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|328955049|ref|YP_004372382.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328455373|gb|AEB06567.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 234

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 25/178 (14%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L +  RA SQVP+I IS        +   D+G D  + KP    E+ A + A+ RR   
Sbjct: 63  DLIKAARAESQVPIIIISARAEAADKIIGLDAGADGYITKPFDPLEVTAYIRAVLRRGGS 122

Query: 122 SNNRAETGPIRVFSDGR--------DPE-----VQGEVFPLPRRERRILEYLMANRGKRV 168
             +  ++   R   DGR        D E       GE   L   E RI+  LM+  G+  
Sbjct: 123 HGHATQSLSGR--GDGRIQVGDLEFDTERLCLAKGGEPIALTAAELRIVAALMSRPGRIF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
            K Q+++ + G   ++   N V  HIS +R KL +    DP+  +     R LGY ++
Sbjct: 181 TKAQLYACVNGRPCDS-GANSVMVHISNIRAKLED----DPLSPRFIKTVRGLGYRLE 233


>gi|325262900|ref|ZP_08129636.1| DNA-binding response regulator RegX3 [Clostridium sp. D5]
 gi|324031994|gb|EGB93273.1| DNA-binding response regulator RegX3 [Clostridium sp. D5]
          Length = 221

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 4/163 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R ++  +  P+I ++    ++      D G DD + KP H   + +R+AA+ RR   
Sbjct: 61  DFCRWVKERADTPVIFLTVRDDVRDITRGLDMGADDYITKPFHVAVLESRIAAVLRRTPA 120

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N    G IR+  +     +  +       E R+LE LM N+G+ + +  I   ++  
Sbjct: 121 EGGNVLICGNIRLNKEKIQVMLDDKPVDTTALEYRLLEVLMENKGRTLPRNLILDKLWDA 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
               V +N +   + +LRKKL +    + + + R +GY ++ N
Sbjct: 181 EGNFVNDNTLTVTVKRLRKKLMDT---EYIVTIRGIGYRMEEN 220


>gi|319796195|ref|YP_004157835.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315598658|gb|ADU39724.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 257

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 15/169 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           L R IR  S +P++ ++    +   +   + G DD V KP   RE++ARV  I RR +  
Sbjct: 85  LCREIRKESDIPIVMLTARGEVTDRVVGLELGADDYVPKPFEPRELVARVQTILRRQRST 144

Query: 121 --VSNNRAETGP-IRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             V+N     G  +RVF       D R    QGE   L   E  +L  L A  GK  ++ 
Sbjct: 145 PAVANGHGNNGTQLRVFDGLSIDLDRRQVLRQGERVELTGTEFELLALLAAEPGKVFSRD 204

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I + + G  +  +    V+  +S+LRKKL      D + + R  GY++
Sbjct: 205 DILNRLRG-HEAELYTRAVDIVVSRLRKKLEP---LDCIKTLRNAGYAL 249


>gi|291459772|ref|ZP_06599162.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417562|gb|EFE91281.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 25/204 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LV DGY           + F +   +E L    +E++  +   ++  G   LEL R IR 
Sbjct: 23  LVSDGY-----------KVFKAYNADEALLIMKQEEIHLVLLDVMMPGMNGLELCRKIRE 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
            S +P+I +S   +    +     G DD V KP +  E+ ARV +  RR    N  +   
Sbjct: 72  SSNIPIIMLSAKSADLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYTQLNPNSTNE 131

Query: 130 ------PIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  IR  +  RD     ++GE   L   E  IL  L ++ GK  +  +IF  ++  
Sbjct: 132 FAGSEINIRNMTINRDNHKVVIEGEDVRLTPIEFEILYLLASHPGKVFSTDEIFEKVW-- 189

Query: 181 FDEAVEE--NVVESHISKLRKKLR 202
            +E V E  N V  HI +LR K++
Sbjct: 190 -NEKVYEANNTVMVHIRRLRGKMK 212


>gi|259415203|ref|ZP_05739125.1| two component transcriptional regulator, winged helix family
           [Silicibacter sp. TrichCH4B]
 gi|259349113|gb|EEW60867.1| two component transcriptional regulator, winged helix family
           [Silicibacter sp. TrichCH4B]
          Length = 240

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 15/229 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD   +++   AL  D G +      +     L      D++ I+  L  +GE  
Sbjct: 9   LIAIVDDDPNMRETLSALMRDSGFAPICCADIAGFHALGDPPPVDLALIDLRL--RGESG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L   IR   ++P++ ++        +   ++G DD + KP + RE++AR+ A+ RR  
Sbjct: 67  LTLAIHIRERYEIPIVMLTGVGDEIDKIIGLETGADDYLIKPFNPRELVARIRAVLRRYG 126

Query: 121 VSNNRAETGPIRVFSDG---------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
               R    P +  + G         R  + +GE  PL   E R+LEY   N  + + + 
Sbjct: 127 HGTARPSVSPGQDIAFGTLRIDVQSRRLLDAEGEEIPLTNAEYRLLEYFAKNPDRVIPRP 186

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218
           ++   +       V+   ++  I +LR+K+  K+   PV   ++R  GY
Sbjct: 187 ELLEELGSDMQRYVDRT-IDVLILRLRRKI-EKVPSKPVHLQTRRAQGY 233


>gi|229122769|ref|ZP_04251978.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228660633|gb|EEL16264.1| DNA-binding response regulator [Bacillus cereus 95/8201]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3]
 gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQIISTYEVDLMVLDIMMPKRNGLEVCQEMRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N   ++ E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSSKNEDGIIRIRSAEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|229173900|ref|ZP_04301438.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228609538|gb|EEK66822.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|187778876|ref|ZP_02995349.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
 gi|187772501|gb|EDU36303.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 4/113 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP   RE++ARV A+ RR    N  +++   G I +  +      +G+   L 
Sbjct: 99  GADDYITKPFSVREMVARVKAVLRRRTTINIESKSYVLGNIVIDFEKHSLTKEGKKIELT 158

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +E  +LE L+ N+GK + +  +   I+G ++   E   V+ HI  LRKK+ +
Sbjct: 159 LKEFELLEVLIKNKGKVMTRDFLLDTIWG-YEYIGETRTVDVHIRHLRKKIED 210


>gi|184159450|ref|YP_001847789.1| response regulator [Acinetobacter baumannii ACICU]
 gi|239501705|ref|ZP_04661015.1| response regulator [Acinetobacter baumannii AB900]
 gi|260557142|ref|ZP_05829358.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|332876292|ref|ZP_08444067.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183211044|gb|ACC58442.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078315|gb|ABO13289.2| transcriptional regulator protein (OmpR family) [Acinetobacter
           baumannii ATCC 17978]
 gi|260409248|gb|EEX02550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|322509364|gb|ADX04818.1| baeR [Acinetobacter baumannii 1656-2]
 gi|323519388|gb|ADX93769.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735564|gb|EGJ66616.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+
Sbjct: 61  LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179
                 +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I   
Sbjct: 121 RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            FD  V + V++SHI  LR+K+
Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200


>gi|169632456|ref|YP_001706192.1| OmpR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169151248|emb|CAO99934.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter baumannii]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+
Sbjct: 61  LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179
                 +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I   
Sbjct: 121 RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            FD  V + V++SHI  LR+K+
Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200


>gi|153801779|ref|ZP_01956365.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|124122679|gb|EAY41422.1| transcriptional regulator [Vibrio cholerae MZO-3]
          Length = 168

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L L + IRA  +QV ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR 
Sbjct: 4   LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 63

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   L+ ++       +RV+   +  E       L  +E  ILE  +   G   ++
Sbjct: 64  IQTHTSNKLRFADLELCLSTMRVYRAEQPIE-------LTAKEISILELFLRKPGHIFSR 116

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +I + ++G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 117 ERILANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 165


>gi|49478095|ref|YP_037336.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196037738|ref|ZP_03105048.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|229092209|ref|ZP_04223390.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|49329651|gb|AAT60297.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196031008|gb|EDX69605.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|228691200|gb|EEL44964.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 238

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 7/185 (3%)

Query: 23  GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGI 78
           G++ EG     + E    LQ S  ++V  +   L+      + + R +RA S  +P+I +
Sbjct: 28  GLTYEGMRVTVTTEGRSGLQVSEEQEVDLVILDLMLPDIDGMVVCRRLRARSSTLPIIML 87

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSD 136
           +    +Q  +     G DD + KP    E+LARV A+ RR  VS  +       + + ++
Sbjct: 88  TARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRRAGVSRPSTVLRIAGLTLDTE 147

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R+  + G    L   E  +LE  M +  +   +  + S ++G F    + N+VE H+S 
Sbjct: 148 TREVTLNGRQLELTPTEFALLELFMRHPRRVFTRETLLSRVWG-FTYVGDSNIVEVHMSN 206

Query: 197 LRKKL 201
           LR+K+
Sbjct: 207 LREKI 211


>gi|327441682|dbj|BAK18047.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 222

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 16/214 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+G+ ALF  DG  +E  N L+ E         D++ ++  ++ K + V     ++  
Sbjct: 20  LKKEGFEALFASDG--MEALNLLQQEPV-------DLAIVDV-MMPKMDGVTLTKNLVEI 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
              VP++ ++   +L      F +G DD + KP   +E+L RV AI RR +    R++  
Sbjct: 70  G--VPVLMLTAKTTLDDKEKGFLAGADDYMVKPFEPKELLFRVRAILRRFQ-KTERSQIK 126

Query: 130 PIRVFSDGRDPEVQ-GE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              +  D +  EV+ GE V  LP +E  +L  L +       + Q+   ++G +D   ++
Sbjct: 127 IANMLIDRQTYEVKVGEQVSLLPLKEFELLSILCSRPEVVFTRDQLMEQVWG-YDYDGDD 185

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + +HI +LR +L        + + R +GY I+
Sbjct: 186 FTLTTHIKRLRSRLEEVNAQVKIQTVRGIGYKIE 219


>gi|325661085|ref|ZP_08149712.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472592|gb|EGC75803.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS-LQTTLDFFDSGVDDVVNK 101
           R D S I   L+      +++ + IR HS VPLI IS   S +  TL     G DD + K
Sbjct: 45  RTDFSMILLDLMIPKISGMDVMQHIREHSVVPLIIISAKDSEIDKTLGL-SLGADDYITK 103

Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRE 153
           P    E+LAR+ A  RR    +  +E  P R+         SD    +  G    L  +E
Sbjct: 104 PFSVVEVLARIKANIRRRNQYDQGSEDIPKRLTAGELVMNLSDYTLTK-SGRRVELTAKE 162

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201
             IL+ LM +  K   K QI++ ++   D  + +EN V  HIS+LR K+
Sbjct: 163 YEILKLLMQHPKKVYTKEQIYALVWK--DTYLGDENAVNVHISRLRNKI 209


>gi|324327183|gb|ADY22443.1| two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 67  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 127 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 186 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|260768252|ref|ZP_05877186.1| two-component system response regulator QseB [Vibrio furnissii CIP
           102972]
 gi|260616282|gb|EEX41467.1| two-component system response regulator QseB [Vibrio furnissii CIP
           102972]
          Length = 214

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 22/216 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           +L + G++     DG+  +       EEW       DV  ++  L  K + +  L  I  
Sbjct: 14  SLEQTGWVPELSQDGI--DALYRATSEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 63

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +  
Sbjct: 64  ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 121

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             I   S D R  +V  +G+   L   E +++ Y M N  K +++T++   IY   FD  
Sbjct: 122 MQIGDLSLDTRSSKVMWRGQAINLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR- 180

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + N +E  I ++RKK+   +    + + R LGY +
Sbjct: 181 -DSNTIEVFIGRIRKKIAPNI----IKTVRGLGYQL 211


>gi|237746571|ref|ZP_04577051.1| response regulator [Oxalobacter formigenes HOxBLS]
 gi|229377922|gb|EEO28013.1| response regulator [Oxalobacter formigenes HOxBLS]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 15/171 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++L   R  R    +P+I ++     +  +   D G DD + KP   +E++AR+ A+ 
Sbjct: 64  GMRLLSRIREHREMKTLPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALL 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEV------QGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR   +  RA++  +R  +   DPE        GE+  +   E R+L++LMAN  +  ++
Sbjct: 124 RR--KAPERAKS-LLRAGAVTLDPESCQVKIGNGEI-EMGHSEFRLLKFLMANPDRVFSR 179

Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   ++    D  +EE  V+ HI +LRK L+ +     + + R +GY +
Sbjct: 180 GQLLDKVWSNQLD--IEERTVDVHILRLRKALKGQENL--IRTVRGMGYML 226


>gi|229110657|ref|ZP_04240221.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228672725|gb|EEL28005.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|229012458|ref|ZP_04169633.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229167897|ref|ZP_04295628.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228615537|gb|EEK72631.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228748817|gb|EEL98667.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ +   
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 127 ET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            T  G I +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D  
Sbjct: 129 ITLHGTI-IDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFE 186

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 187 GDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|256821572|ref|YP_003145535.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256795111|gb|ACV25767.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 9/162 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           + +R  SQVP++ ++        +   + G DD + KP + RE+ AR+  I RR +    
Sbjct: 65  KTVRKESQVPILMLTARGDEIDRIVGLELGADDYIAKPCNPRELTARIRTILRRTENVYS 124

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + ++   G + +    R+  +  EV  L   E  IL  LM+N G  V++  +    
Sbjct: 125 TKHKKLQSVHLGDVYINPASREVLLNNEVVKLTATEFDILYLLMSNAGTLVSRDDLSEGC 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            G   EA + + ++ HIS LR+KL  +  G + + + R +GY
Sbjct: 185 LGRTLEAYDRS-IDMHISNLRRKLGPDTKGDERIKTVRGVGY 225


>gi|261342454|ref|ZP_05970312.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315092|gb|EFC54030.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
          Length = 219

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG        G S++ F   +  +    SA  D   ++  L       L
Sbjct: 3   ILLVEDDKLIGDGIKTGLSKLGFSVDWFTDGKTGQAALYSAPYDAVVLDLTL--PEIDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  R   +  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EMLRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRR-S 119

Query: 121 VSNNRAETGPIRVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               R+E    +V  D       + G+   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 120 HGQTRSELRHGKVMLDPVSLVATLDGDTLVLKPKEFALLELLMRNAGRVLPRKHIEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D+ V  N VE H+  LR+    KLG + + +   +GY++
Sbjct: 180 N-WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 216


>gi|228928237|ref|ZP_04091278.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228946799|ref|ZP_04109104.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229122717|ref|ZP_04251927.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201]
 gi|228660768|gb|EEL16398.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201]
 gi|228812923|gb|EEM59239.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228831284|gb|EEM76880.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 245

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 88  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 147

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+ N G+ ++   I S ++G +
Sbjct: 148 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 206

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL + +    + + R +GY ++
Sbjct: 207 DFDGDGSTVHTHIKNLRAKLPDNI----IKTVRGVGYRLE 242


>gi|171320020|ref|ZP_02909092.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171094747|gb|EDT39789.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 221

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 7/159 (4%)

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR     
Sbjct: 64  RNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNSGHA 123

Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLF 181
           N   T G + +    R  E+ G+   L R+E  +LE ++A+R +R+ +K ++ + ++   
Sbjct: 124 NDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKDELLNQLFSFG 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E    N VE +++++R+KL+       + + R +GY I
Sbjct: 183 NEP-SANAVEQYVTRVRRKLQGS--SVEIRTARGMGYQI 218


>gi|171056968|ref|YP_001789317.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774413|gb|ACB32552.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 20/138 (14%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD---GRDPEVQ---- 143
            D+G DD + KP    E+ AR+ A+ RR    + RA++    V S      DP  +    
Sbjct: 102 LDAGADDYLVKPFELDELAARIRAVMRR---HSGRAQS----VLSHRGVTLDPATRQVTR 154

Query: 144 -GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            G+   L  RE  +LE LM   G  + + Q+   +YG + E +E N V  +I +LR+KL 
Sbjct: 155 DGQPVLLSAREIAVLEALMTRPGAMLTRAQLEDRLYG-WGEEIESNAVSVYIYQLRRKLG 213

Query: 203 NKLGFDPVDSKRFLGYSI 220
              GF  + + R LGYS+
Sbjct: 214 P--GF--IRTMRGLGYSL 227


>gi|190566948|ref|ZP_03019864.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|190561939|gb|EDV15908.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|312879868|ref|ZP_07739668.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
 gi|310783159|gb|EFQ23557.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR---AETG 129
            P+I ++   ++   ++  + G DD + KP   +E+LARV A+ RR   S  R    + G
Sbjct: 73  TPVIMLTAKDAVDDRVEGLNRGADDYLIKPFDFKELLARVNALIRRH--SEQRRPLLKCG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
           P+ +    R+  V     PL RRE  ILE LM    +   + +I S ++    +    NV
Sbjct: 131 PLTLDPVARECCVGETKVPLRRREFDILELLMRYENQVFTRDKIISHVWQKEYDGT-SNV 189

Query: 190 VESHISKLRKKLR 202
           V+ H+  LR KLR
Sbjct: 190 VDVHVKYLRDKLR 202


>gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 6/151 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L++ +++R  S +P+I ++        +   + G DD V KP +  E+ AR+ AI RR  
Sbjct: 62  LQVCQLVREFSNIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAILRRSQ 121

Query: 120 ---KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              KV N +  E G +R+  + R   ++ +   L  +E  +LE    + GK  ++ Q+  
Sbjct: 122 HAEKVPNKKTIEVGELRLEVNSRRVFIKNQEMNLTAKEFDMLELFATHPGKVYSRDQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            I+G  +   +   V+ H+ +LR+K+    G
Sbjct: 182 TIWGR-EYPGDVRTVDVHVRRLREKIEPNPG 211


>gi|269977562|ref|ZP_06184529.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|307701335|ref|ZP_07638356.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
 gi|269934165|gb|EEZ90732.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|307613496|gb|EFN92744.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 24/167 (14%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R IRA    +P++ ++        +   DSG DD V KP    E+LARV A+ RR 
Sbjct: 59  LDVARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRA 118

Query: 119 ---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                    ++  + R E    R F   R+ ++  + F L       L  L+ + G  V+
Sbjct: 119 GGEVTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDL-------LRVLIRDAGSVVS 171

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           + Q+   ++G  D +     ++ H+S LR+KL      D  +S R++
Sbjct: 172 REQVMREVWG-SDPSGSTKTLDMHVSWLRRKL-----GDDANSPRYI 212


>gi|229163396|ref|ZP_04291347.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228619965|gb|EEK76840.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 240

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR+ S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 70  RQIRSVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 129

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 130 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 187

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 188 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIQNAIVTKRGYGYAL 230


>gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
 gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           L ++   +   P++ ++   S++  +   D+G +D + KP    E+LARV  + R+   V
Sbjct: 63  LRKMRNKNENTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVRKTAAV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E G + V  D       G+   L  +E  +L Y++ N G  +++ ++   ++  +
Sbjct: 123 QKTCYEVGGLEVHVDTHQVLRNGKEIALSSKEFALLRYMVQNEGIVLSREKLEQHLWN-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
           D     NVV+ +I  LRKK+    GF+P  + + R  GY +  N
Sbjct: 182 DYMGSSNVVDVYIRYLRKKIDE--GFEPKLIHTVRGAGYVLRVN 223


>gi|153954764|ref|YP_001395529.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347622|gb|EDK34158.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 5/166 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ R +R  S++P+I ++    +   +   D G +D + KP    E+LAR+  +++   
Sbjct: 63  MEVLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKS 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 NN    G +++         +     L ++E  +L+YLM N+   +++  I   
Sbjct: 123 NNNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G +D   + N+V+ +I  LR K+ +K     + + R LGY   +
Sbjct: 183 VWG-YDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQFRY 227


>gi|159185227|ref|NP_355418.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159140490|gb|AAK88203.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D G DD + KP    E  ARV  + RR   + ++    G +      R     G    +
Sbjct: 91  LDLGADDYMIKPFDITEFEARVRVLLRRNAGLRSSALSFGKVLFDLTSRTFSADGRPLDI 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P RE  +LE L    GK VAK  I  ++ G FD+ +  N +E ++S+LRK+L    G   
Sbjct: 151 PAREVALLEVLFMRAGKVVAKEAIVQSLTG-FDDDISANAIEQYVSRLRKRLAPH-GL-T 207

Query: 210 VDSKRFLGYSID 221
           V + R +GY ++
Sbjct: 208 VKTARGIGYYLE 219


>gi|29653715|ref|NP_819407.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 493]
 gi|153207221|ref|ZP_01945985.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154705969|ref|YP_001425049.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii Dugway 5J108-111]
 gi|161830581|ref|YP_001596307.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 331]
 gi|165918696|ref|ZP_02218782.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 334]
 gi|212213134|ref|YP_002304070.1| PhoB [Coxiella burnetii CbuG_Q212]
 gi|212218191|ref|YP_002304978.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii CbuK_Q154]
 gi|29540978|gb|AAO89921.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii RSA 493]
 gi|120576709|gb|EAX33333.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154355255|gb|ABS76717.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii Dugway 5J108-111]
 gi|161762448|gb|ABX78090.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 331]
 gi|165917631|gb|EDR36235.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 334]
 gi|212011544|gb|ACJ18925.1| PhoB [Coxiella burnetii CbuG_Q212]
 gi|212012453|gb|ACJ19833.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii CbuK_Q154]
          Length = 248

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 4/179 (2%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D+  ++  L GK G + +E  +       +P++ ++     +  +    SG DD + KP 
Sbjct: 63  DLILLDWMLPGKSGIEFIEWIKQKEIWQDIPIVLLTAKAEEENKVRGLMSGADDYITKPF 122

Query: 104 HHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
              E++AR+ AI RR  L  SN   + G I++ +      V+ E   L   E ++L + M
Sbjct: 123 SPDELIARIRAILRRGPLISSNQEIKIGDIKINTAKHLVTVKDEHIALSPTEYKMLHFFM 182

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  K  ++ Q+ + I+G  +  +++  V+  + +LR KL+       + + R  GY +
Sbjct: 183 KHPNKTYSRDQLITYIWG-GNIYIDDRTVDVQVRRLRDKLKKYDHHHLIKTIRGAGYQL 240


>gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 19/229 (8%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DDRA V+DG        G  +    + E       S R D   ++  L   G   
Sbjct: 4   VLIIEDDRA-VRDGVRLALRRQGHEVAAAATGEDGLEQLRSFRPDAVVLDLML--PGMSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IRAH QVP+I  +        +   ++G DD V KP+  R + AR+ A+ RR+ 
Sbjct: 61  LEVCRRIRAHDQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVLRRVG 120

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + +   T      G + +   G     QG    L   E R+L  L A+ G+  ++ Q+ 
Sbjct: 121 GTADDQGTPRTEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            A++   +   +  +V++ +    K+LR+K+G  P     V + R  GY
Sbjct: 181 EAVW-EHNYHGDARLVDACV----KRLRSKIGESPGSPRYVHTVRGFGY 224


>gi|30264508|ref|NP_846885.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47529970|ref|YP_021319.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187332|ref|YP_030584.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481533|ref|YP_038490.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65321809|ref|ZP_00394768.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118479595|ref|YP_896746.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871961|ref|ZP_02216602.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167640712|ref|ZP_02398972.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688676|ref|ZP_02879881.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709121|ref|ZP_02899548.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653965|ref|ZP_02936006.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|196034304|ref|ZP_03101713.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196039317|ref|ZP_03106623.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044880|ref|ZP_03112114.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218905634|ref|YP_002453468.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225866421|ref|YP_002751799.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227817220|ref|YP_002817229.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917078|ref|ZP_04080636.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929485|ref|ZP_04092505.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935759|ref|ZP_04098571.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948154|ref|ZP_04110438.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229093513|ref|ZP_04224615.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229123980|ref|ZP_04253172.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229186681|ref|ZP_04313840.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229604230|ref|YP_002868724.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684197|ref|ZP_05148057.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724632|ref|ZP_05186415.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736544|ref|ZP_05194250.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254751319|ref|ZP_05203356.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757651|ref|ZP_05209678.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301055947|ref|YP_003794158.1| two-component response regulator [Bacillus anthracis CI]
 gi|30259166|gb|AAP28371.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505118|gb|AAT33794.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181259|gb|AAT56635.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49333089|gb|AAT63735.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|118418820|gb|ABK87239.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164712251|gb|EDR17787.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511284|gb|EDR86670.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170125973|gb|EDS94873.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667362|gb|EDT18120.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081020|gb|EDT66098.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|195992846|gb|EDX56805.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196024368|gb|EDX63041.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029944|gb|EDX68545.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538158|gb|ACK90556.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225786077|gb|ACO26294.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227003846|gb|ACP13589.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228596784|gb|EEK54445.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228659282|gb|EEL14930.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228689843|gb|EEL43648.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228811512|gb|EEM57849.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823816|gb|EEM69636.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830165|gb|EEM75782.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842496|gb|EEM87586.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268638|gb|ACQ50275.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300378116|gb|ADK07020.1| two-component response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|325926597|ref|ZP_08187911.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325542949|gb|EGD14398.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR +  ++   + G  
Sbjct: 73  TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQIGGF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              +      + G    LP RE R+ E L+   G+ V K +I + ++G FD+    N +E
Sbjct: 133 VFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LR+KL
Sbjct: 192 LYVGRLRRKL 201


>gi|310644747|ref|YP_003949506.1| sensory transduction protein bcer [Paenibacillus polymyxa SC2]
 gi|309249698|gb|ADO59265.1| Sensory transduction protein BceR [Paenibacillus polymyxa SC2]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 23/162 (14%)

Query: 65  RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           R+IR+HS VP+I +S  D+P+ +  ++     G DD + KP H   ++A++ A  RR  V
Sbjct: 65  RMIRSHSNVPIIFLSSRDHPTDMVMSMQL---GADDFIQKPFHFDVLIAKIQATLRR--V 119

Query: 122 SNNRAETGPIRVFS----DGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N   E   ++ +     D     V  E     L + E  IL+ L+  + K VA+ ++  
Sbjct: 120 YNYNTEPVSLKTWRGATVDYEKNVVANEAGSIELTKNEIFILKLLIEQKNKIVAREELIK 179

Query: 176 AIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +++   DE  V +N +  ++++LRKKL      D +D  RF+
Sbjct: 180 SLWD--DERFVSDNTLTVNLNRLRKKL------DELDLGRFI 213


>gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
 gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 32/219 (14%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D Y A  G+D V L       +EE        D+  ++  L G+    +E+ R +R   +
Sbjct: 28  DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKFE 73

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124
           +P+I ++   S    +   + G DD V KP   RE++ARV A  RR        +  ++N
Sbjct: 74  MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQEVNNASN 133

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 I ++ D    + +GE   L  RE  +  YL  + G+ + +  +   ++G +D  
Sbjct: 134 EITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDYF 192

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 193 GDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227


>gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family
           [Bacillus pseudofirmus OF4]
          Length = 229

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 19/198 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY+    D+ ++  G  +LE  E+ L S    DV   E           E+ R IR
Sbjct: 23  LRKEGYVV---DEAIT--GIEALEKVEKTLYSVVLLDVMMPEM-------DGFEVCREIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRA 126
             SQVP+I ++        +     G DD + KP    E+LARV A+ RR  VS   +R 
Sbjct: 71  KVSQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAVLRRYGVSEPESRG 130

Query: 127 ETGPIRVFSDGRDP---EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            T   +     R+        E   L  +E  ILE  + N+ +  ++  I   ++G +D 
Sbjct: 131 NTLFFKGLVMKRNAYQVYYNEEELSLTPKEFAILELFLLNKNRVFSRDDILELVWG-YDF 189

Query: 184 AVEENVVESHISKLRKKL 201
             +   V++H+  LR KL
Sbjct: 190 IGDYRGVDTHVKHLRDKL 207


>gi|258621919|ref|ZP_05716949.1| DNA-binding response regulator [Vibrio mimicus VM573]
 gi|262171352|ref|ZP_06039030.1| two-component system response regulator QseB [Vibrio mimicus
           MB-451]
 gi|258585857|gb|EEW10576.1| DNA-binding response regulator [Vibrio mimicus VM573]
 gi|261892428|gb|EEY38414.1| two-component system response regulator QseB [Vibrio mimicus
           MB-451]
          Length = 219

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 22/216 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL + G++     DG+  +       EEW       DV  ++  L  K + +  L  I  
Sbjct: 19  ALDQTGWVPELSQDGI--DALYRATAEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +  
Sbjct: 69  ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             +   S D R  +V  +G+   L   E +++ Y + N  K +++T++   IY   FD  
Sbjct: 127 MQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFVHNPEKVISRTELVEHIYKQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + N +E  I ++RK    K+  D + + R LGY +
Sbjct: 186 -DSNTIEVFIGRIRK----KIAPDVIKTVRGLGYQL 216


>gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA    VPL+ ++       T+   D+G DD V KP    E+LARV A+ RR 
Sbjct: 61  LEVARRLRAEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRG 120

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V   +A  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++
Sbjct: 121 AVEPQQAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
                +     ++ HIS LRKKL
Sbjct: 181 DTTWWS-STKTLDMHISWLRKKL 202


>gi|229828736|ref|ZP_04454805.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM
           14600]
 gi|229793330|gb|EEP29444.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM
           14600]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 9/147 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P++ +S   +    +     G DD ++KP   RE+LAR+ A  RR + 
Sbjct: 61  EVCRAIRDQILCPILFLSAKQAESDKIHALTLGGDDFISKPFGLRELLARIEANLRREQR 120

Query: 122 SN-NRAETGPIRV-FSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173
           S  N  +    R+ F+D     ++  V       PL RRE  I+E L    G+  ++  I
Sbjct: 121 SQENHHQKKRTRLYFADLSLDLLEHRVRIGDTEIPLSRREYEIVELLALRAGQVFSREHI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200
           +  ++G   E     VVE HI K+RKK
Sbjct: 181 YERVWGCDAEGDAYTVVE-HIRKIRKK 206


>gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 242

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 10/170 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR  
Sbjct: 73  LEVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSS 132

Query: 121 VSN---NRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N    + E G IR+ S          +V GE   L   E  IL  L +N G+  +  +
Sbjct: 133 FQNATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEE 192

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           IF  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 193 IFERVWN-EDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIE 241


>gi|223983041|ref|ZP_03633245.1| hypothetical protein HOLDEFILI_00525 [Holdemania filiformis DSM
           12042]
 gi|223964991|gb|EEF69299.1| hypothetical protein HOLDEFILI_00525 [Holdemania filiformis DSM
           12042]
          Length = 222

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 20/169 (11%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R  S +P++ ++   S    L     G DD + KP + + +LA + A+ +R    
Sbjct: 63  ICRSLRQQSSIPILMVTSRSSDLDELMSMSLGADDFITKPYNVQILLAHIQAVLKRAYPQ 122

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L+V+    +     V  + +  E       L + E RIL  LM  +G  V++ +I
Sbjct: 123 DQGRLLEVNGVTLDLSKGCVMHENQSVE-------LTKNEIRILWLLMRKQGTIVSRDEI 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            + ++   +E V++N +  +I++LR+KL + +G  P  + +KR LGY I
Sbjct: 176 MTDLWQ-SEEFVDDNTLTVNINRLRRKLES-IGVSPDYLSTKRGLGYRI 222


>gi|42782326|ref|NP_979573.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|217960663|ref|YP_002339227.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222096718|ref|YP_002530775.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228986323|ref|ZP_04146460.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229139866|ref|ZP_04268431.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|229197364|ref|ZP_04324091.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|42738251|gb|AAS42181.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|217065124|gb|ACJ79374.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221240776|gb|ACM13486.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228585988|gb|EEK44079.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228643531|gb|EEK99797.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|228773350|gb|EEM21779.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|163940906|ref|YP_001645790.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863103|gb|ABY44162.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ +   
Sbjct: 67  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 126

Query: 127 ET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            T  G I +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D  
Sbjct: 127 ITLHGTI-IDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFE 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 185 GDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262]
 gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL
           J2-064]
 gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL
           J1-208]
 gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262]
 gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816]
 gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220]
 gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes
           str. Scott A]
          Length = 237

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 16/189 (8%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
            + +G  +LE  E +Q     D+  ++  L G+    +E+ R +R    +P+I ++   S
Sbjct: 32  CAYDGDEALELVEEVQP----DLILLDIMLPGRDG--IEVCREVRKKYDMPIIMVTAKDS 85

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVSNNRAETGPIRVF 134
               +   + G DD V KP  +RE++ARV A  RR          +  N+  E G + + 
Sbjct: 86  EIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQVSSNAAEEEENSELEIGSLIIH 145

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D      +GE   L  RE  +L YL  + G+ + +  +   ++G +D   +   V+  +
Sbjct: 146 PDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREHLLQTVWG-YDYFGDVRTVDVTV 204

Query: 195 SKLRKKLRN 203
            +LR+K+ +
Sbjct: 205 RRLREKIED 213


>gi|331003431|ref|ZP_08326930.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412477|gb|EGG91866.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 19/212 (8%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DDR +V    I L G+     E   + + EE ++  A+   + ++  +I     V
Sbjct: 4   ILVCDDDREIVDAIKIYLSGE---GFEVLTAYDGEEAIKLMAK---NRVDLLIIDIMMPV 57

Query: 61  LELPRI---IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L+  R    IR +S VP+I +S        +   + G DD + KP +  E++ARV +  R
Sbjct: 58  LDGIRATMKIRENSTVPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLR 117

Query: 118 RLKVSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R K   N       +   G + +  + ++  + GE+  L   E  IL  L  N GK  + 
Sbjct: 118 RYKKLGNISIPESQKVVVGDLEIDDETKEVTIAGEMIKLTPIEYNILLLLAKNAGKVFSI 177

Query: 171 TQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201
            +I+  I+   +EA+  +N V  HI  +R+K+
Sbjct: 178 DEIYEQIWN--EEAIGADNTVAVHIRHIREKI 207


>gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 10/151 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 SNNR---AETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  AE G       I +          G+V  +P +E  +L +L ++  +   + Q
Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   I+G ++   +   V+ HI +LR+K+++
Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREKIKD 214


>gi|325848909|ref|ZP_08170419.1| putative response regulator protein GraR [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480553|gb|EGC83615.1| putative response regulator protein GraR [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 222

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S +P+I ++        ++  + G DD ++KP   + +  ++ A+ RR       N
Sbjct: 66  IREISNLPIIFLTSAADDINLINAINYGADDFISKPFSMQVLNMKIKALLRRSYDFSGKN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  I +  D    +V  +   L + E  ILE LM N  K V++  I   ++   D 
Sbjct: 126 FDLSYENISLIKDKMILKVDDKEINLSKNEFLILEILMENPQKIVSREAIMDKLWAT-DS 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +++N +  +I++LRKKL++  G D  + +K+ +GY I
Sbjct: 185 FIDDNTLTVNINRLRKKLKD-FGLDDFIQTKKGVGYFI 221


>gi|307293762|ref|ZP_07573606.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879913|gb|EFN11130.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 239

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 26/216 (12%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58
            +L+DD   +++      G +G     F     E   ++  R + +AI+  ++     GE
Sbjct: 7   LLLVDDERSIREPLAQYLGRNG-----FRVTAVENAAEARMRLNANAIDLVILDIMMPGE 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             L L R IR  S++P+I ++        +   + G DD V KP   RE++AR+  I+RR
Sbjct: 62  DGLSLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRR 121

Query: 119 LKVSNNR--AETGPIRVFSDG--RDPE-----VQGEVFPLPRRERRILEYLMANRGKRVA 169
           +     R  A  G    F++   +  E      +G   PL   E  ++        + ++
Sbjct: 122 VATGGQRVTAPDGATYAFANWLLKTQERTLVDSEGVALPLSTAEYNLMLAFATRPNQVLS 181

Query: 170 KTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
           + Q+     G     FD A     +++ IS+LRKK+
Sbjct: 182 RDQLLDITQGREANAFDRA-----IDNQISRLRKKI 212


>gi|224038940|gb|ACN38369.1| putative two-component system response regulator [Micromonospora
           inyonensis]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R++RA S VP+I  +        +   D+G DD V KP    ++ ARV A+ RR   
Sbjct: 62  ELLRMLRAVSPVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARVRAVLRRGGS 121

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK----TQI 173
           +    +     G +RV    R   + GE   L  RE  +L +L A  G+ V K    T++
Sbjct: 122 AAGADDPALVVGGLRVDPRARQVTLDGEPVELTPREFDLLHHLAARPGEVVTKRELMTEV 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   YG  D+      V+ H+S LR+KL
Sbjct: 182 WQIPYGGADK-----TVDVHLSWLRRKL 204


>gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 251

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 9/165 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +R     VP++ ++    +   +   D G DD V KP   +E+ ARV A+ RR  
Sbjct: 87  EVCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSG 146

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   NR   G I++ +D            L   E  +L YLM N G+ +++ QI  
Sbjct: 147 GGRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQE 206

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   DE     VV+++I  LR+KL  + G   + + R +GY +
Sbjct: 207 RVWNHRDEG--SGVVDTYIYYLRRKL-GEPGQSLIRTVRGVGYQL 248


>gi|224437571|ref|ZP_03658529.1| hypothetical protein HcinC1_06380 [Helicobacter cinaedi CCUG 18818]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 13/152 (8%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ +S   S++  L  F  G DD V+KP +   +L R+ A  R    S    E   I
Sbjct: 72  RTPVVIMSSKSSVENELHAFKEGADDFVSKPFNAEVLLVRIQARLRFWGSSVIEIEDLVI 131

Query: 132 -----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
                ++   G++ EV+G+ F        +L +L  +R + V+K Q+  AI+    E V 
Sbjct: 132 NPDEEKITYKGQEIEVKGKPF-------EVLTHLARHRDQIVSKEQLLDAIWE-EPELVT 183

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            NV+E  I+++R+K+   L    +++ R  GY
Sbjct: 184 PNVIEVAINQIRQKMDKPLNIGTIETVRRRGY 215


>gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++  
Sbjct: 61  LEVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V+  + E     G + +               L  RE  +L+ LM N+   + ++ +   
Sbjct: 121 VTVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 181 VCG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|169794777|ref|YP_001712570.1| OmpR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157895|ref|YP_002320693.1| two component signal transduction system response regulator
           [Acinetobacter baumannii AB0057]
 gi|215482321|ref|YP_002324503.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB307-0294]
 gi|301345681|ref|ZP_07226422.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB056]
 gi|301511858|ref|ZP_07237095.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB058]
 gi|301594996|ref|ZP_07240004.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB059]
 gi|332852228|ref|ZP_08434033.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332870450|ref|ZP_08439214.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|169147704|emb|CAM85567.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter baumannii AYE]
 gi|213057055|gb|ACJ41957.1| two component signal transduction system response regulator
           [Acinetobacter baumannii AB0057]
 gi|213985926|gb|ACJ56225.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB307-0294]
 gi|332729358|gb|EGJ60698.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332732187|gb|EGJ63455.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+
Sbjct: 61  LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179
                 +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I   
Sbjct: 121 RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            FD  V + V++SHI  LR+K+
Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200


>gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++  
Sbjct: 61  LEVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V+  + E     G + +               L  RE  +L+ LM N+   + ++ +   
Sbjct: 121 VTVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 181 VCG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|170724335|ref|YP_001752023.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169762338|gb|ACA75654.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IRA  + VP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EVLRKIRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   + V    R     G+   L  +E  +LE LM  RG+ + K+ I S ++
Sbjct: 121 GGSAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFALLELLMRRRGEVLPKSLIASQVW 180

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + FD   + NV+E  I +LR K+ +      + + R +GY +D
Sbjct: 181 DMNFDS--DTNVIEVAIRRLRAKIDDDFAPKLIHTARGMGYMMD 222


>gi|24376110|ref|NP_720153.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24351142|gb|AAN57597.1|AE015895_6 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 222

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 11/136 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
              P++ ++   SLQ  +D F SG DD +NKP    E+  R+ +++ R      R + G 
Sbjct: 72  CNTPILFLTARDSLQDKIDSFTSGGDDFLNKPFAMEELCLRLRSLHNR----GPRLDVGI 127

Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           +R      +   Q     G+   L + +R IL  L+ +    V+K Q+  A++G  D+A 
Sbjct: 128 LRFGEISLNVATQQACRAGKEIKLSKIQRTILTLLLKHAPAIVSKEQVIDAVWG--DDAP 185

Query: 186 EENVVESHISKLRKKL 201
             + + SHI  LR  L
Sbjct: 186 CSDALRSHIYGLRSAL 201


>gi|73748029|ref|YP_307268.1| DNA-binding response regulato [Dehalococcoides sp. CBDB1]
 gi|73659745|emb|CAI82352.1| DNA-binding response regulato [Dehalococcoides sp. CBDB1]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)

Query: 67  IRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           IRA  S+VP++ ++        +   +SG D+ + KP H  E+L+RV  + RR  + +  
Sbjct: 68  IRAFSSEVPVLILTVTNDEHCIVRALESGADEYIIKPFHQLELLSRVKVLLRRRLMDSEE 127

Query: 126 A--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                GP R+        V      L   E+ I+ +L++N G  V  T +  AI+G  + 
Sbjct: 128 VAINVGPFRLSKYSNTLMVDNRRLILTNTEKIIMSHLLSNAGNLVPATLLAEAIWG-HNY 186

Query: 184 AVEENVVESHISKLRKKL 201
              ++ V  HI +LR+K+
Sbjct: 187 TNAKDAVRVHIWRLRRKV 204


>gi|87301814|ref|ZP_01084648.1| two-component response regulator [Synechococcus sp. WH 5701]
 gi|87283382|gb|EAQ75337.1| two-component response regulator [Synechococcus sp. WH 5701]
          Length = 248

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 23/195 (11%)

Query: 41  SAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLD 89
           +A + V A+EAF     + V+    +P++        +R  S VP++ ++    +   + 
Sbjct: 37  TASDGVEALEAFRQSSPDLVVLDVMMPKLDGYGVCQELRKESDVPIVMLTALGDVADRIT 96

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNRA-ETGPIRVFSDGRDPEV 142
             + G DD V KP   +E+ AR+  + RR++      + N+   + G +R+ ++ R    
Sbjct: 97  GLELGADDYVVKPFSPKELEARIRCVLRRVEKDPVVGIPNSGVIQVGELRIDTNKRQVYR 156

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE-AVEENVVESHISKLRKKL 201
             E   L   E  +LE L++  G+  ++ +I   ++G   E  V+  VV+ HIS+LR KL
Sbjct: 157 GEERIRLTGMEFSLLELLVSRSGEPFSRGEILKEVWGYTPERHVDTRVVDVHISRLRSKL 216

Query: 202 RNKLGFDPVDSKRFL 216
            +    DP + +  L
Sbjct: 217 ED----DPANPELIL 227


>gi|323343098|ref|ZP_08083329.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463162|gb|EFY08357.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 16/156 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+   IR H  VP++ +S   + Q     F  G DD ++KP    E+  RV ++ RR  
Sbjct: 60  FEVSEAIRKHYNVPILFVSAKATEQDKFVGFSVGGDDYLSKPFSFSELSLRVKSLLRRYI 119

Query: 120 ---KVSNNRAETGPIRVF-SDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAK 170
              + + N  E   +    S   D E       G    L  RE RIL+ L  NRGK  + 
Sbjct: 120 QYDRATENALEQNKVNTIDSITIDLEKGITLKDGLPLDLTEREFRILKLLATNRGKIFSI 179

Query: 171 TQIFSAIYG---LFDEAVEENVVESHISKLRKKLRN 203
             I+  ++    L+  A   N V  HI  LRKK+ N
Sbjct: 180 QSIYENVWQDEYLYSSA---NTVMVHIRNLRKKIEN 212


>gi|255767758|ref|NP_391202.2| two-component response regulator YvrH involved in cell wall
           processes YvrG [Bacillus subtilis subsp. subtilis str.
           168]
 gi|321312870|ref|YP_004205157.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis BSn5]
 gi|251757511|sp|P94504|YVRH_BACSU RecName: Full=Transcriptional regulatory protein yvrH
 gi|225185386|emb|CAB15312.2| two-component response regulator YvrH involved in cell wall
           processes [YvrG] [Bacillus subtilis subsp. subtilis str.
           168]
 gi|320019144|gb|ADV94130.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis BSn5]
          Length = 237

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-- 114
           G    E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  
Sbjct: 60  GMSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHL 119

Query: 115 --IYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              Y+  + S+N+  T     FS    +  V GE      +  ++L+Y   +    ++K 
Sbjct: 120 KRTYQSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKD 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           QI+  ++G +    + N V  HI KLR+K+ R+    + + + R LGY
Sbjct: 180 QIYEKVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGY 226


>gi|126652337|ref|ZP_01724513.1| two-component response regulator [Bacillus sp. B14905]
 gi|126590912|gb|EAZ85025.1| two-component response regulator [Bacillus sp. B14905]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           RA++++PL+ ++        +  F+ G DD + KP    E+  RV A+ +R ++  ++  
Sbjct: 69  RANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIGYSQTI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + G I +           +   LP +E  +L  L    G+   + Q+   I+G+ D A +
Sbjct: 129 KLGAITLDRQTYKIMTGTDTITLPLKEFELLYKLAETPGQVYTREQLIDQIWGI-DYAGD 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++ HI +LR++      F  +++ R LGY ++
Sbjct: 188 NRTIDVHIKRLRERFAMIADFH-IETIRGLGYRLE 221


>gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 22/208 (10%)

Query: 23  GVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGIS- 79
            V+ +G  +L       ++ARE D+  +    +  G   LE+ R +R+   QVP+I ++ 
Sbjct: 29  SVAYDGLTAL-------TAARELDIDLVILDWMLPGLSGLEICRRLRSTGDQVPVILLTA 81

Query: 80  -DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138
            D  S    +   D+G DD V KP    E+LARV A  RR    N  A+ G I  F D  
Sbjct: 82  KDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAHLRR----NQDADAGDILQFEDLS 137

Query: 139 DPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
                 EVF       L  +E  +LEYL+ +  + + + +I   ++  +D   + N++E 
Sbjct: 138 LNRRTREVFRGQRLIDLTAKEFDLLEYLLTHPRQVITRDRILEQVWD-YDFIGDSNIIEV 196

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +I  LR KL        + + R +GY +
Sbjct: 197 YIRYLRLKLETNNEKRLIQTVRGVGYVL 224


>gi|157963921|ref|YP_001503955.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848921|gb|ABV89420.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L+L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R 
Sbjct: 60  LKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRG 119

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +      GP+ +    R   + G+   L  +E ++L+YLM +  + +++T +F A+
Sbjct: 120 ESQPAVTDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLLFEAV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   FD     NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 180 WDYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|75759276|ref|ZP_00739375.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903343|ref|ZP_04067474.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228910680|ref|ZP_04074491.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|74493225|gb|EAO56342.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228848948|gb|EEM93791.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228856304|gb|EEN00833.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 242

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 13/186 (6%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+  L+    EE L+   + DV  I   ++      + +   +R  +++P+I +S    
Sbjct: 35  EGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHMCMKVREIAEMPIIMLSAKTQ 94

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN------NRAETGPIRVFSD 136
               +    +G DD V KP +  E++AR+ +  RR +K+S       N  E G ++V   
Sbjct: 95  DMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKMSGTSVQDENEIEIGDMKVNIV 154

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHIS 195
            R   +  E   L  RE  +LE L+ N+G  +   QI+  ++   ++A + +N V  HI 
Sbjct: 155 TRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIYERVWK--EQAFQSDNTVMVHIR 212

Query: 196 KLRKKL 201
           K+R+K+
Sbjct: 213 KIREKI 218


>gi|30263183|ref|NP_845560.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47528548|ref|YP_019897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186033|ref|YP_029285.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65320511|ref|ZP_00393470.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167632499|ref|ZP_02390826.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637046|ref|ZP_02395326.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170684879|ref|ZP_02876104.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705287|ref|ZP_02895752.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650137|ref|ZP_02933138.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564781|ref|ZP_03017702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196032201|ref|ZP_03099615.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218904374|ref|YP_002452208.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225865180|ref|YP_002750558.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227813952|ref|YP_002813961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228915829|ref|ZP_04079405.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928291|ref|ZP_04091332.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228934497|ref|ZP_04097332.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229046908|ref|ZP_04192540.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229602195|ref|YP_002867447.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254685790|ref|ZP_05149649.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254723197|ref|ZP_05184985.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738260|ref|ZP_05195963.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742572|ref|ZP_05200257.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254752575|ref|ZP_05204611.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761091|ref|ZP_05213115.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118413|ref|ZP_07056159.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|30257817|gb|AAP27046.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47503696|gb|AAT32372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179960|gb|AAT55336.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167514553|gb|EDR89919.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532797|gb|EDR95433.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170130142|gb|EDS99004.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170671139|gb|EDT21877.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172084089|gb|EDT69148.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564098|gb|EDV18062.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994952|gb|EDX58906.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218537351|gb|ACK89749.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225786724|gb|ACO26941.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227006224|gb|ACP15967.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228724453|gb|EEL75778.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228825134|gb|EEM70931.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228831338|gb|EEM76934.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843810|gb|EEM88883.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229266603|gb|ACQ48240.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724198|gb|EFI64894.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|186682188|ref|YP_001865384.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464640|gb|ACC80441.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 244

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 98/201 (48%), Gaps = 17/201 (8%)

Query: 36  EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSG 94
           ++L++   E   AI  +++  G   +EL + +R+ H  +P++ ++    ++  +   DSG
Sbjct: 38  QYLETGWTEYTLAIFDWML-PGVSGVELCKWLRSRHLTLPVLMLTAKDRMEEKIIGLDSG 96

Query: 95  VDDVVNKPIHHREILARVAAIYRRL---------KVSNNRAETGPIRVFSDGRDPEVQ-- 143
            DD + KP    E+LAR+ A+ RR          +V   R + G + +     +   Q  
Sbjct: 97  ADDYLIKPFGMAELLARLRALQRRASYVGATLTPQVQPRRLQVGCLILNYSTHELTRQYS 156

Query: 144 ---GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
                VF L  +E ++LEY M +    +++ QI + ++ +  E V  NVV + I  LR+K
Sbjct: 157 HREKRVFSLTVKEFQLLEYFMRHPNHIISRDQIINQLWEIGAEPV-SNVVAAQIRLLRRK 215

Query: 201 LRNKLGFDPVDSKRFLGYSID 221
           L  +     +++   +GY ++
Sbjct: 216 LGEEDSESLIETIYGVGYRLN 236


>gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
 gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
          Length = 240

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 22/223 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LEL 63
           R L     I +  D+ V ++G   +L+ E +   +  +   A+E    GK + +   L +
Sbjct: 3   RELYHMAKILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELAREGKFDLIILDLMM 62

Query: 64  PRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           P+I        IR  S VP+I ++        +  F+ G DD + KP +  E+ ARV A+
Sbjct: 63  PKIDGLQACMRIREFSNVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRAL 122

Query: 116 YRRLKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            RR        +  +   G IR+  + R     G    L  +E  ++E LM N G+  ++
Sbjct: 123 LRRSGAAVQHQAAGQLTVGHIRLDPNERSAWKDGVSVDLTAKEFDLMELLMRNPGRVYSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             + + ++G ++   +   V+ H+    ++LR KL  DP + +
Sbjct: 183 ENLLNVVWG-YEYIGDYRTVDVHV----RRLREKLELDPANPQ 220


>gi|296536395|ref|ZP_06898497.1| response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296263277|gb|EFH09800.1| response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 19/160 (11%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---------RLKV 121
           +  P++ +S    +   +    +G DD + KP    E+LARV A+ R         RLKV
Sbjct: 72  NHTPVLFLSALGGVDERVKGLKAGGDDYLVKPFAFAELLARVEALGRRPAVDAPATRLKV 131

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           ++   +     V   GR  ++Q        RE R+LE+LM + G+ V +T +   ++   
Sbjct: 132 ADLELDLLSRTVTRAGRKIDIQ-------PREFRLLEHLMRHAGQVVTRTMLLEKVWDYH 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + NV++ H+S+LR+KL        + + R  GY I
Sbjct: 185 FDP--QTNVIDVHVSRLRQKLDKGQDKPLIHTVRNAGYMI 222


>gi|228946856|ref|ZP_04109158.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812843|gb|EEM59162.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|228915183|ref|ZP_04078778.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229159088|ref|ZP_04287139.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228624355|gb|EEK81131.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228844414|gb|EEM89470.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|324326567|gb|ADY21827.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 65  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     D +++ R +GY   I W+
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLHIEDAIETIRSVGYRLHITWD 230


>gi|227328253|ref|ZP_03832277.1| two-component system response regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 19/208 (9%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF++   L  +E +  +   D +A+   ++      +++ R IR   Q+P+I ++    
Sbjct: 23  EGFSTSRVLTGKEGVDGATSGDYTAMILDVMLPDMSGIDVLRQIRKTQQLPVIMLTARGD 82

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDG 137
               +   + G DD + KP + RE++AR+ A+ RR       K   + A +G + +    
Sbjct: 83  NIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYDDQPSTKRDESLAASGDLVLNPAT 142

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R  E +G+ F L   E  +LE L+ +  + V+K ++     G   EA + + V+ HIS +
Sbjct: 143 RISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELSEKCLGRRREAYDRS-VDVHISNI 201

Query: 198 RKKLRNKLGFDP-----VDSKRFLGYSI 220
           R+    KLG  P     +++ R +GY I
Sbjct: 202 RQ----KLGVLPGNTMTIETVRSVGYRI 225


>gi|206973923|ref|ZP_03234841.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206748079|gb|EDZ59468.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 65  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     D +++ R +GY   I W+
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIEDAIETIRSVGYRLHITWD 230


>gi|126698058|ref|YP_001086955.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile 630]
 gi|254974096|ref|ZP_05270568.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-66c26]
 gi|255091495|ref|ZP_05320973.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile CIP 107932]
 gi|255099603|ref|ZP_05328580.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-63q42]
 gi|255313223|ref|ZP_05354806.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-76w55]
 gi|255515913|ref|ZP_05383589.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-97b34]
 gi|255649007|ref|ZP_05395909.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-37x79]
 gi|306519126|ref|ZP_07405473.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-32g58]
 gi|115249495|emb|CAJ67310.1| Two-component response regulator [Clostridium difficile]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR     P+I +S   S    +     G DD V KP   RE++AR+ A  RR K
Sbjct: 60  FEVCQAIRDDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREK 119

Query: 121 VSN-----NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            S      N+  T   G + ++   R  ++ G+   L + E  I+E L  + G+  ++ Q
Sbjct: 120 RSQYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I+  ++G   E     VVE  + K+R K 
Sbjct: 180 IYEKVWGCDSEGDSSTVVE-RVKKIRAKF 207


>gi|116696030|ref|YP_841606.1| response regulator [Ralstonia eutropha H16]
 gi|113530529|emb|CAJ96876.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 240

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 10/149 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L R+ RA SQ P+I  + +      +   + G DD ++KP   RE+ AR+ A+ RR  
Sbjct: 69  LDLLRLHRARSQRPVIMFTAHGDEADRVLGLELGADDYLSKPFSPRELKARMHAVLRRFH 128

Query: 121 VSNNRA-------ETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +   A       E G +R+  + G       E  PL   E+R+LE LM   G+ VA+ +
Sbjct: 129 RAAPAAPAQAPWLEAGALRLNLASGLAIHGNAEA-PLTGAEQRVLEILMRAPGRVVARAE 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I     G   E  + + +++HIS LR+KL
Sbjct: 188 IGRFALGRAPERYDRS-LDTHISALRRKL 215


>gi|325663027|ref|ZP_08151477.1| hypothetical protein HMPREF0490_02217 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470481|gb|EGC73711.1| hypothetical protein HMPREF0490_02217 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 1/153 (0%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I ++        +  F  G DD + KP     + ARV  +  R+       
Sbjct: 79  IRRESEVPVIMLTANDLEIDQVTGFSLGADDYITKPFSLMILRARVERMLARMAQDKGLT 138

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E    R   +     V+G+   L + E+++L  L+ ++G+ + + Q+   I+    + V
Sbjct: 139 YEKDGYRFVFEQMYFTVEGKEVTLSKTEQKLLRILIEHQGQTLTREQLVDRIWSDGAQYV 198

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           EEN +   + +LRKKL      +P+ +   LGY
Sbjct: 199 EENALSVTVGRLRKKLEQTGKKNPIQTVYGLGY 231


>gi|319442462|ref|ZP_07991618.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 244

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 17/189 (8%)

Query: 32  LEFEEWLQSSAREDVSAIE--------AFLIGKGEKVLE----LPRIIRAHSQVPLIGIS 79
           LEF+++   +A +  SA+E        A+++      ++    L ++  A  + P++ ++
Sbjct: 37  LEFQDFDVRTANDGASALEIAKDFQPDAYILDVMMPGMDGFTVLNKLREAGDEAPVLFLT 96

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFS 135
              ++   +     G DD V KP    E++ R+  I RR++      E+      + +  
Sbjct: 97  AKDAVDDRIHGLTLGADDYVTKPFALEEVITRLRVILRRVQPEEKEDESLITYADLTLSD 156

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
           D  +    G+V  L   E ++L YL+ N    V+K +I  A++  +D   + NVVES++S
Sbjct: 157 DMHEVTKGGQVVDLSPTEFKLLRYLLINAEVVVSKAKILDAVWE-YDFGGDGNVVESYVS 215

Query: 196 KLRKKLRNK 204
            LR+K+  +
Sbjct: 216 YLRRKIDTQ 224


>gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R  ++ +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+     G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KAEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY ID
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKID 222


>gi|222096133|ref|YP_002530190.1| response regulator [Bacillus cereus Q1]
 gi|221240191|gb|ACM12901.1| response regulator [Bacillus cereus Q1]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 65  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     D +++ R +GY   I W+
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIEDAIETIRSVGYRLHITWD 230


>gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 234

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 102/205 (49%), Gaps = 18/205 (8%)

Query: 28  GFNSLEFEEWLQS--SAREDVSAIEAF-LIGKGEKVLELPRIIR---AHSQVPLIGISDY 81
           G+N L+ E+ L +   AR+   A+    L+      LE+ ++++   A +++P+I ++  
Sbjct: 31  GYNVLKAEDGLSALEQARQTSPALIVLDLMLPEMSGLEVCKVLKRETATNRIPVIMLTAK 90

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRVFS 135
                 +   + G DD + KP   RE++ RV ++ RR   ++N AE       G I++  
Sbjct: 91  AEEVDRIVGLELGADDYMTKPFSPRELVLRVKSVLRR---ASNGAEVSDRLVLGDIQIDR 147

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
              +  + G+V      E ++L  L+  RG+   +  + + ++G ++  ++   V++HI 
Sbjct: 148 TRHEVTIGGKVVDFTATEFKLLALLIERRGRVQDRETLLNDVWG-YETVIDTRTVDTHIR 206

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220
           +LR+KL     +  +++ R  GY +
Sbjct: 207 RLREKLGKSGSY--IETIRGFGYRV 229


>gi|170756446|ref|YP_001780968.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169121658|gb|ACA45494.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+   +R+ S + P+I ++    ++      D+G DD + KP    E+ AR+ AI RR 
Sbjct: 60  IEILNYLRSESIETPVIIVTARDEVEQLAFGLDNGADDYITKPFKLLELRARIHAIIRRF 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +N     G +++    R  E++ +   L  +E  ILEY+       V+  +I   IY
Sbjct: 120 HGRTNPIINIGKLQLNPITRTVEIENKPVALASKEFDILEYICYRHPAVVSSEEIAEHIY 179

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              DE  +   +V+  HI++L+KKL N  G + + + R  GY
Sbjct: 180 ---DENFDPFSSVLRVHIARLKKKLSNASGKEILINIRGKGY 218


>gi|158521332|ref|YP_001529202.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158510158|gb|ABW67125.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 234

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA SQVP+I ++        +   + G DD ++KP + RE+LAR+ A+ RR   S   A
Sbjct: 69  IRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRATASAEAA 128

Query: 127 ET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +   GR     G    +   E  IL  L++++G  + + ++   
Sbjct: 129 PVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPLTRDRLLDL 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
             G   E  + + ++ HIS++RKKL +
Sbjct: 189 ASGRDFETFDRS-IDVHISRIRKKLED 214


>gi|187928863|ref|YP_001899350.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725753|gb|ACD26918.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 6/159 (3%)

Query: 67  IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSN 123
           +RA  Q VP++ ++   S+   +   + G DD + KP    E+LARV  + RR    V+ 
Sbjct: 66  LRASEQAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGNSAVTA 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           +R +   + +    R     G+  PL  +E  +LE L+  RG+ + ++ I S ++ + FD
Sbjct: 126 DRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVWDMNFD 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 186 S--DTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLE 222


>gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435]
 gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR
 gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 32/219 (14%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D Y A  G+D V L       +EE        D+  ++  L G+    +E+ R +R   +
Sbjct: 28  DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKFE 73

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124
           +P+I ++   S    +   + G DD V KP   RE++ARV A  RR        +  + N
Sbjct: 74  MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQEVSGTTN 133

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 I ++ D    + +GE   L  RE  +  YL  + G+ + +  +   ++G +D  
Sbjct: 134 EITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDYF 192

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 193 GDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227


>gi|320450181|ref|YP_004202277.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01]
 gi|320150350|gb|ADW21728.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01]
          Length = 220

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 58  EKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E    L R +R A    P++ ++   +L   L   + G +D + KP    E++AR+ A+ 
Sbjct: 61  EAGFHLARTLREAGFTQPILFLTAKDALDDRLHGLELG-EDYLTKPFALSELVARIRALL 119

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR +V   R E G + +  + R          L  +E ++LE L+ NRG+  +K +I   
Sbjct: 120 RRGEVRPRRVEVGEVVLEVEARRVLKGSLPIGLTAKEYQVLELLVLNRGRVFSKDEILER 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G   E  E N+VE ++    K LR KLG + +++ R LGY +
Sbjct: 180 IWGPGYEG-ESNLVEVYV----KNLRKKLGEEVIETIRGLGYRV 218


>gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG-----E 145
            D+G DD + KP    E+ AR+ A++RR K    +A+   + +     DP  +      +
Sbjct: 91  LDAGADDYLTKPFSFDELTARIRALFRRGK----KADATLLTIGDLSLDPATKTVKRGEQ 146

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              L  RE  +LEY + N    + KTQI   ++    E +  N+VE+++  LRKK++ 
Sbjct: 147 SIVLTTREYALLEYFLRNPNILLTKTQILEHVWDYNFEGL-SNIVETYVKYLRKKIKT 203


>gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQT-TLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R IR  S VP++ ++   SL+T  ++   +G DD + KP  + E++AR+ A+ RR 
Sbjct: 60  IDVCRKIREKSYVPILFLT-AKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRC 118

Query: 120 KVSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +V +N            E   + + +   +    G    L  +E +IL  L+++  K  +
Sbjct: 119 RVYDNADASDTTASSTIERCGLTLDTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFS 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
              IF +++         N +  HI  LR KL    G
Sbjct: 179 TQNIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCG 215


>gi|294634562|ref|ZP_06713097.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685]
 gi|291092076|gb|EFE24637.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685]
          Length = 285

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 23/210 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEK 59
           +LI+D  L+ DG  A     G+S  GF    F +  Q  A  D +  +A ++     G  
Sbjct: 70  LLIEDDRLIGDGIKA-----GLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLPGID 124

Query: 60  VLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            LE+ R  R   H++ P++ ++   +L+  +     G DD + KP    E+ AR+ A+ R
Sbjct: 125 GLEILRRWREAGHAE-PVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIR 183

Query: 118 R------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R       ++S+      P+ + +      + G    L  +E  +LE L+ N G+ + ++
Sbjct: 184 RNHGQTQTQLSHGAVTLDPLSLTA-----TLDGAPLLLKPKEFALLELLLRNAGRVLPRS 238

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            I   +Y  ++  V  N VE HI  LR+KL
Sbjct: 239 LIEEKLYN-WEGDVSSNAVEVHIHHLRRKL 267


>gi|239927334|ref|ZP_04684287.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 6/186 (3%)

Query: 37  WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95
           W+  +    +  ++  L G  G KV    R  R  + VP++ ++         +  D+G 
Sbjct: 38  WMARTGEYALVVLDLMLPGLNGYKVCAQLR--REGNAVPILVLTAKDGEWDQAEALDTGA 95

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRER 154
           DD + KP  +  ++AR+ A+ RR   +       G + +   GR     G    L  RE 
Sbjct: 96  DDYLAKPFSYLVLVARLRALVRRAATAAPPVLAVGDLSLDVAGRVCRRAGVRVELTPREF 155

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
            +LE L    G+ V+KT +    +   DEA + N+VE+ +S LRKK+        + + R
Sbjct: 156 AVLELLARRAGQAVSKTDLL--YHAWPDEAQDPNLVEARVSALRKKVDAAFHRKSLQTVR 213

Query: 215 FLGYSI 220
             GY +
Sbjct: 214 GTGYRL 219


>gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112]
 gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112]
 gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 241

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 9/151 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + +RA   +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 68  LEVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQA 127

Query: 119 -LKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            LK      +N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 128 TLKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREH 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 188 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 217


>gi|218898303|ref|YP_002446714.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228901739|ref|ZP_04065911.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228966150|ref|ZP_04127212.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218542653|gb|ACK95047.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228793519|gb|EEM41060.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228857871|gb|EEN02359.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|111022019|ref|YP_704991.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821549|gb|ABG96833.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 105/238 (44%), Gaps = 36/238 (15%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58
            +++DD A +++   A         EGF+ +   +   + A  + S+ +  ++     G 
Sbjct: 6   VLVVDDEATIREAVAARL-----RAEGFDVVTASDGPSAVAECEASSPDVLVLDVMLPGY 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             LE+ R ++A   VP++ ++        L     G DD ++KP   R ++ARV A+ RR
Sbjct: 61  DGLEVCRRVQASRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRR 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQG--EVFPLPRRERR-------------ILEYLMAN 163
              ++   ET P       RD    G  EV  + RR RR             +L Y  + 
Sbjct: 121 ---ADRAQETVPAE-----RDGLSVGDIEVDLVERRVRRGVDEIHLTRTEFDLLAYFASR 172

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
               +A+  + + ++G  D A     V+SH+    K LR KLG D + +   +GY++D
Sbjct: 173 PRAAIARESLLAEVWGWGDGA-GSRTVDSHV----KALRRKLGGDLIRTVHGVGYALD 225


>gi|28870461|ref|NP_793080.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|302132949|ref|ZP_07258939.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28853708|gb|AAO56775.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|330875864|gb|EGH10013.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
 gi|330966287|gb|EGH66547.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331017200|gb|EGH97256.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129
            P++ IS    +   +    +G DD + KP    E+ ARV  + RR   +  +    +  
Sbjct: 74  TPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAAKTVLQVA 133

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +    R+    GE   L   E ++LE+LM N G+ + +  IF  ++G  FD     N
Sbjct: 134 DLELNLISREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHFDPGT--N 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ HI +LRKK+        + + R  GY I
Sbjct: 192 LIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|163941059|ref|YP_001645943.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863256|gb|ABY44315.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K+ S    
Sbjct: 69  RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQTI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +           E   LP +E  +L  L    G+   + Q+   I+G+ D A +
Sbjct: 129 HLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGI-DYAGD 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  V+ HI +LR++      F  +++ R LGY ++
Sbjct: 188 DRTVDVHIKRLRERFATTHDFR-IETVRGLGYRLE 221


>gi|330991619|ref|ZP_08315570.1| Phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter sp. SXCC-1]
 gi|329761638|gb|EGG78131.1| Phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter sp. SXCC-1]
          Length = 244

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 21/207 (10%)

Query: 28  GFNSL-EFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           G ++L E  EW     + D+  ++  + G  G  +    R+  A   +P+I ++     +
Sbjct: 41  GLDALREVTEW-----KPDLVLLDWMMPGLSGVDLCRRLRMATATRYLPVIMLTARGEER 95

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---------GPIRVFSD 136
            ++   D+G DD + KP     + ARV A+ RR       A             I V   
Sbjct: 96  DSIHALDTGADDYLVKPCGMDVLHARVRAVMRRCAGRGATAAAEQNDDVLGFADITVDHG 155

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE--AVEENVVESHI 194
           GR     G    L   E RIL +L+ N  +  ++ +I +A +   D+   VEE  V+ HI
Sbjct: 156 GRRVTRGGSAIALGPTEYRILLHLLRNPRRVFSRAEILAAAW---DDRIHVEERTVDVHI 212

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +LR  L    G D + + R  GY +D
Sbjct: 213 RRLRLALNAGGGVDLIRTVRSSGYMLD 239


>gi|294628412|ref|ZP_06706972.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
 gi|292831745|gb|EFF90094.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
          Length = 249

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 21/209 (10%)

Query: 30  NSLEFEEWLQSSAREDVSAI-EAFLIGKGEKVLE--LP---------RIIRAHSQVPLIG 77
            +L ++ W   +A +  SA+ EA  +     VL+  LP         R+      V ++ 
Sbjct: 39  GALRYQGWEVRTAEDGASAVAEARALRPDAVVLDVMLPDTDGLTVLRRLHEVRPDVCVLL 98

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-----TGPIR 132
           ++   +++  +    +G DD V KP    E++AR+  + RR  ++   A+      G + 
Sbjct: 99  LTARDAVEDRIAGITAGGDDYVTKPFSLEEVIARLRGLLRRAGMARQPADGPRLTVGDLV 158

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  D R+    GE+  L   E  +L +LM N  + ++KTQI   ++  +D     +VVE 
Sbjct: 159 MDEDAREVTRAGELIELSPTEYELLRFLMRNPRRVLSKTQILDRVWS-YDFGGRAHVVEL 217

Query: 193 HISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +IS LRKK+    G +P + + R  GY +
Sbjct: 218 YISYLRKKV--DAGREPMIHTVRGAGYVL 244


>gi|294670535|ref|ZP_06735415.1| hypothetical protein NEIELOOT_02257 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307814|gb|EFE49057.1| hypothetical protein NEIELOOT_02257 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 39/220 (17%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA-----FLIGK 56
            +L++D A++ +       D G +++         W+++  +  VSA++A      L+  
Sbjct: 3   VLLVEDDAMIAEAAACGLKDSGYAVD---------WIKNGGQV-VSAVQAQPYDLILLDL 52

Query: 57  G----EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           G    + +  L  +  A   VP++ ++    L + L   D G DD + KP    E+ AR+
Sbjct: 53  GLPGCDGLQILAELRAAGCSVPILIVTARDDLHSRLGGLDGGADDYIVKPFDMAELQARM 112

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDG---RDPEV--------QGEVFPLPRRERRILEYLM 161
            A+ RR    N +++  P    S+G    DP          +G++  L  +E  +L+ L+
Sbjct: 113 RAVLRR---HNGQSQALP----SNGLLTLDPATRRVRVAGQEGDIM-LSNKEFAVLQALL 164

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              G  +++T +   IYG + E VE N V+  I  LRKKL
Sbjct: 165 MRPGMILSRTDLEDKIYG-WGEEVESNAVDFLIHALRKKL 203


>gi|229821566|ref|YP_002883092.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229567479|gb|ACQ81330.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ R +RA    P+I ++   +    +   + G DD V KP   RE++ R+ ++ RR  
Sbjct: 68  LEVTRRVRAICDAPIIMLTALGTGDDRIAGLEVGADDYVTKPFSPRELVLRIQSVLRRAL 127

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L   ++ A  GP+ +    R     G+V PL  RE  +L +LM +  +  ++ ++   
Sbjct: 128 GPLSAPSD-ATAGPLDLDGARRRVTRDGDVVPLTTREFDLLAFLMRHPDRAFSREELLEH 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           ++G      + + V  H+ +LR K+ +
Sbjct: 187 VWGW--TFGDLSTVTVHVRRLRAKIED 211


>gi|229522675|ref|ZP_04412091.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80]
 gi|229528012|ref|ZP_04417403.1| DNA-binding response regulator [Vibrio cholerae 12129(1)]
 gi|229334374|gb|EEN99859.1| DNA-binding response regulator [Vibrio cholerae 12129(1)]
 gi|229340660|gb|EEO05666.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80]
          Length = 247

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    +   +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 92  LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 148

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 149 SGSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 208

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE   +N +E HI  LRKKL + L    V + R +GY I+
Sbjct: 209 G-WDEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 246


>gi|258516208|ref|YP_003192430.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779913|gb|ACV63807.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 101/219 (46%), Gaps = 17/219 (7%)

Query: 18  LFGDDGVSLEGFNSLEFEE--WLQSSAREDVSAIEAFLIGKGEKV-----------LELP 64
           L  +D V +  F  LE E   ++    ++  + +E  L G  + +           +E+ 
Sbjct: 7   LIIEDEVKISRFIQLELEHEGYIVEKEKDGRAGLEKALHGNHDLIILDVMLPSLNGMEIL 66

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S++P+I ++    +   +   D G DD + KP    E+LAR+   ++  +V + 
Sbjct: 67  RRLRQVSEIPVIMLTAKDDVMDKVMGLDFGADDYLTKPFAIEELLARIRVAFKHKRVQHE 126

Query: 125 RA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++   + G +++           E   L ++E  +L+ LM N    + +  I   ++G +
Sbjct: 127 KSDVIQIGNLKLDLYKYTVSFNNEPIDLTKKEFDLLKLLMVNNEIVLTRDTILEKVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + A + N+V+ ++  LR K+ ++     + + R +GY +
Sbjct: 186 NYAGDTNIVDVYVRYLRIKIDDRYHQKFIHTVRGVGYQL 224


>gi|229161494|ref|ZP_04289475.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228622031|gb|EEK78876.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 65  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDITRNEAILLETLMKNYPRVVSREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     D +++ R +GY   I W+
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLHIEDAIETIRSVGYRLHITWD 230


>gi|257785147|ref|YP_003180364.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473654|gb|ACV51773.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 237

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE+V    R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++
Sbjct: 64  GERVC---RAIRDTSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALF 120

Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR     + A    + G + +   G    +  E   L   E ++L  L    G+   + +
Sbjct: 121 RRTYSEPDTAVDVLDYGTLTIDISGHKILINNEEVDLTASEFKLLTTLARYPGRVYTRME 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +   + G +D    E  ++SH+    K LR KLG DP
Sbjct: 181 LVEKVLG-YDFEGYERTIDSHV----KNLRAKLGDDP 212


>gi|169335528|ref|ZP_02862721.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258266|gb|EDS72232.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM
           17244]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 24/194 (12%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGIS 79
           +LE +E+   +A+    A++  +  K + +L           ++ + IR  S +P+I +S
Sbjct: 21  TLESKEYKFHTAKNGKQALDEAISRKPDVILLDLGLPDMDGVDIIKKIRGWSNMPIIVVS 80

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR- 138
                +  +D  D+G DD + KP    E+LAR+   +RRL   N+        +F +G  
Sbjct: 81  ARSEDKDKIDALDAGADDYLTKPFSVDELLARLRVAFRRLDYQNSNYNKNESPIFINGGL 140

Query: 139 --DPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
             D E  G VF       L   E +++  L  N GK +    I + I+G  FD  V    
Sbjct: 141 KIDYE-SGCVFVDDKEVHLTPNEYKLICLLSKNVGKVLTHKYILNEIWGTAFDSDVAS-- 197

Query: 190 VESHISKLRKKLRN 203
           +  +++ LRKK+ N
Sbjct: 198 LRVYMATLRKKIEN 211


>gi|182416794|ref|ZP_02948188.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237667398|ref|ZP_04527382.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379374|gb|EDT76871.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237655746|gb|EEP53302.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 72/140 (51%), Gaps = 3/140 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           +R  S VP+I ++        L  +D G DD + KP   + ++A+V A+ +R +  + ++
Sbjct: 68  LREVSTVPVILLTAKSEEDDKLQGYDYGADDYITKPFSPKVLIAKVKALLKRSREDIDSS 127

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E   + +     +  V G+   L  +E  +L YL+ N G  +++  I   ++GL D  
Sbjct: 128 SQEFNGLTINKLSHEVRVNGKEITLSPKEYELLIYLVTNEGIALSRDNILDNVWGL-DYY 186

Query: 185 VEENVVESHISKLRKKLRNK 204
            +   V++++ +LR+KL ++
Sbjct: 187 GDIRTVDTNVKRLREKLLDR 206


>gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
 gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 6/142 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           IR   + P+I ++     +  +   + G DD + KP   +E+LAR+ A+ RR        
Sbjct: 68  IRESDKTPVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVLRRFGAEEEGS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +  D  +  V G+    P +E  +L +L A+  +   + Q+   ++G F
Sbjct: 128 GEKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLAASPNRVFTRNQLLDEVWG-F 186

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D   +   V+ HI +LR+KL  
Sbjct: 187 DYFGDSRTVDVHIKRLREKLEG 208


>gi|254245751|ref|ZP_04939072.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124870527|gb|EAY62243.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 78  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 137

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R +    RV + G   E++ ++ P    E R+L + M +  +  ++TQ+   ++G  D
Sbjct: 138 GLRLDPATHRVAAHGDGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 192

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 193 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|194367537|ref|YP_002030147.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194350341|gb|ACF53464.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 219

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 74/148 (50%), Gaps = 6/148 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132
           P++ ++        L  FD+G DD + KP    E++ R+ A+ RR    ++ R   GP++
Sbjct: 74  PVLVLTARGRWHDKLAGFDAGADDYLTKPFQADELVLRLRALIRRSHGHASPRLRCGPLQ 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  +    E+ G+  PL  +E R+L Y + + G+ + + ++   +   FD   + +   +
Sbjct: 134 LDVNAGRFELDGQALPLSPQEFRLLSYFIHHSGQVIGRDRLGEQV---FDGGHDPD--SN 188

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  L  ++R KLG D + + R  G+ +
Sbjct: 189 ALDVLLGRVRRKLGIDLIQTVRGQGWRL 216


>gi|170703189|ref|ZP_02893997.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|172062527|ref|YP_001810178.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|170131903|gb|EDT00423.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171995044|gb|ACB65962.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 221

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 7/159 (4%)

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR     
Sbjct: 64  RNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNSGHA 123

Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLF 181
           N   T G + +    R  E+ G+   L R+E  +LE ++A+R +R+ +K ++ + ++   
Sbjct: 124 NDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKDELLNQLFSFG 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E    N VE +++++R+KL+       + + R +GY I
Sbjct: 183 NEP-SANAVEQYVTRVRRKLQGS--SVEIRTARGMGYQI 218


>gi|315221901|ref|ZP_07863812.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315188867|gb|EFU22571.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP  +  +LA+V  + RR        
Sbjct: 71  IRKISKVPIMFLSSRYQAMDIVMAINMGGDDFVTKPFDNNVLLAKVQGLLRRSYEFGTDQ 130

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + +     D   +GEV  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 131 SLLEYHGVILNLKSMDMVYEGEVITLTKNEFQILRVLFEHSGSIVARDDLMKELWN-SDF 189

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      + +++K+ +GY +
Sbjct: 190 FIDDNTLSVNVARLRKKLEEVGLKNFIETKKGIGYRL 226


>gi|315037328|ref|YP_004030896.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325955796|ref|YP_004286406.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|312275461|gb|ADQ58101.1| putative response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325332361|gb|ADZ06269.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|327182633|gb|AEA31080.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 24/217 (11%)

Query: 23  GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79
            ++ EGF+   + + EE +Q     D   +   L+   +  LE+ R +R    +P+I ++
Sbjct: 21  NLTKEGFDVDTAYDGEEAVQKVDEYDPDLMILDLMLPKKDGLEVAREVRQTHDMPIIMVT 80

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-----SNNRAE------T 128
              +    +   + G DD V KP  +RE++ARV A  RR  +     + N+ E       
Sbjct: 81  AKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDIVKKAEAANQEEPDKNIKI 140

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +  D    E  G+   L  RE  +L YL  + G+ + +  +   ++G +D   +  
Sbjct: 141 GNLLIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTREHLLQTVWG-YDYFGDVR 199

Query: 189 VVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSI 220
            V+  + +LR+K+ N    +P+      ++R +GY +
Sbjct: 200 TVDVTVHRLREKIEN----NPIQPQVLVTRRGVGYYV 232


>gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 26/211 (12%)

Query: 23  GVSLEGFN---------SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV 73
           G+ LEGF           LEF       A  D+  ++  L   G   +E+ R +RA S V
Sbjct: 21  GLILEGFQVSVAHDGPQGLEFAR----EAAHDLVVLDLML--PGIDGIEVARRLRAASDV 74

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P+I ++   S+   +   ++G DD + KP    E+LAR+    RR       A+   I  
Sbjct: 75  PIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQLRR----RQSAQQSDILR 130

Query: 134 FSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           F++       R+  +      L  +E  +L+  M +  + + +  I+  ++G +D   E 
Sbjct: 131 FANLTLDTAARELRIGDRRIDLTAKEYDLLDLFMRHPNQVLTREVIYDRVWG-YDFGGES 189

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           N++E ++  LR+KL    G   + + R  GY
Sbjct: 190 NIIEVYVRYLRQKLEAGGGSRVIQTVRGAGY 220


>gi|303241736|ref|ZP_07328233.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590737|gb|EFL60488.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 15/173 (8%)

Query: 46  VSAIEAF-----------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           + AIEAF           ++  G    ++ R IR  S +P+I +S        +   + G
Sbjct: 38  IKAIEAFKTFAPNIVVLDIMLPGADGWQVCREIRQVSNIPIIMLSAKGETFDKVLGLELG 97

Query: 95  VDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPR 151
            DD + KP   +E++ARV A+ RR   K  + +    P  V +      +V G    +P 
Sbjct: 98  ADDYIVKPFESKELVARVKAVLRRYEHKEIDVKEVVYPNLVINKSNYTLKVNGTDMEVPP 157

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +E  +L +L +N  K   + Q+   ++G FD   +   V+ HI +LR+K+ ++
Sbjct: 158 KELELLYFLASNPNKVFTRDQLLEQVWG-FDFYGDSRTVDVHIKRLREKIESE 209


>gi|266625779|ref|ZP_06118714.1| DNA-binding response regulator VicR [Clostridium hathewayi DSM
           13479]
 gi|288862317|gb|EFC94615.1| DNA-binding response regulator VicR [Clostridium hathewayi DSM
           13479]
          Length = 183

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 22/154 (14%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S   ++ +S        +    SG DD + KP   RE+  RV A  RR +
Sbjct: 38  LEVCRRIREFSYCSILFLSSRNDDIDKILGLSSGGDDYITKPFSPREVAFRVKAQLRRQR 97

Query: 121 VSNNRA-------ETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
             N  +         GP+       RV+ +GR+  + G       RE  +L YLM N  K
Sbjct: 98  YQNAPSPAVSSVLTAGPLSLDQESGRVWKNGREISLTG-------REFLLLSYLMENTDK 150

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
            ++K +++  ++G     + +N +  HI  LR+K
Sbjct: 151 IISKERLYEQVWGE-SSCICDNTIMVHIRHLREK 183


>gi|238922778|ref|YP_002936291.1| hypothetical protein EUBREC_0366 [Eubacterium rectale ATCC 33656]
 gi|238874450|gb|ACR74157.1| hypothetical protein EUBREC_0366 [Eubacterium rectale ATCC 33656]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 16/171 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R +R    VP++ +S        L+  + G DD + KP  + E++++V A+ RR  
Sbjct: 60  IETCRRMRERHSVPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALIRRYL 119

Query: 121 V----SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V    S NR       ET  +++F++    E       L  +E  IL+ LM N  +    
Sbjct: 120 VYDSGSANRTNKDETIETDGLKLFTNRNKVEFNDNEIKLTGKEYEILKLLMKNPDRIYTI 179

Query: 171 TQIFSAIYGLFDEAVE---ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             I+  ++   DEA     +N V  HI  LR KL    G   + ++   GY
Sbjct: 180 EMIYEMVW---DEAFTYNAKNTVMVHIKNLRNKLIKACGDACIHTEWGRGY 227


>gi|228940323|ref|ZP_04102894.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973239|ref|ZP_04133828.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786435|gb|EEM34425.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819449|gb|EEM65503.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326940961|gb|AEA16857.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|254383670|ref|ZP_04999019.1| LndI [Streptomyces sp. Mg1]
 gi|194342564|gb|EDX23530.1| LndI [Streptomyces sp. Mg1]
          Length = 263

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    PLI ++   S    +    +G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 103 EVCRAIRAVGDTPLIAVTARGSELDRVLGLQAGADDYLVKPYGFRELLARMEAVMRRARP 162

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     GP+R+ +  R+  + G    L R+E  +L  L +     +++ Q+ + ++
Sbjct: 163 RPQASRVITHGPLRIDAGTREVLLAGRPVELTRKEFDLLHLLASQPEAVISRRQLMTQVW 222

Query: 179 GLFDEAVEE--NVVESHISKLRKKL 201
              D+        +++H+S LR KL
Sbjct: 223 ---DDTWSHRGRTIDTHVSSLRGKL 244


>gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. 230613]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP   RE++ARV A+ RR    N  +++   G I V  +       GE   L 
Sbjct: 99  GADDYITKPFSVREMVARVKAVLRRRTTINIESKSYILGNIVVDFEKHSLTKAGEKIELT 158

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +E  +LE L+ N+GK + +  +   I+G ++   E   V+ HI  LRKK+ +
Sbjct: 159 LKEFELLEVLIKNKGKVMTRDFLLDRIWG-YEYIGETRTVDVHIRHLRKKIED 210


>gi|114566483|ref|YP_753637.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337418|gb|ABI68266.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 239

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R ++ HS+   +P+I ++       T+   + G DD + KP   RE++ARV A  R
Sbjct: 63  LEVCRTLKQHSEYKTIPIIMLTAKGEEIDTILGLEMGADDYIKKPFSPREMVARVKARLR 122

Query: 118 RLKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            L++       G        + V  +  +  +  E   L  +E  +L  + +N+GK   +
Sbjct: 123 ALRILKAEKAMGQKAYVFKELTVVPEKYEAFIGEEKLELTPKEFELLRLMASNQGKVFTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
             +   ++G ++ + +   V+ HI  LR+KL +   + D +++ R +GY
Sbjct: 183 EVLLEKVWG-YEFSGDTRTVDVHIRHLRQKLGDDSTYPDYIETVRGVGY 230


>gi|46200280|ref|YP_005947.1| two-component response regulator [Thermus thermophilus HB27]
 gi|46197908|gb|AAS82320.1| two-component response regulator [Thermus thermophilus HB27]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
            G DD + KP   RE+LAR+ A+ RR      R   GP+ V  +GR   ++GE   L   
Sbjct: 94  EGADDYLGKPFSLRELLARIKALLRRAG-KEGRRRFGPLEVDLEGRRAYLEGEPLRLSPT 152

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  +L       G+   + ++   ++G   E   E VV++++  LRKKLR+    DP ++
Sbjct: 153 EMNLLLVFAQAPGRVFTRGELLERVWGPEFEG-SERVVDAYVRLLRKKLRD----DP-EA 206

Query: 213 KRFL 216
            RF+
Sbjct: 207 PRFI 210


>gi|30021338|ref|NP_832969.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|118478527|ref|YP_895678.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196042921|ref|ZP_03110160.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206968886|ref|ZP_03229841.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218233754|ref|YP_002367955.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228921982|ref|ZP_04085293.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228953540|ref|ZP_04115583.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229070715|ref|ZP_04203945.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229080448|ref|ZP_04212969.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229097707|ref|ZP_04228662.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|229103767|ref|ZP_04234447.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|229116716|ref|ZP_04246100.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|229128513|ref|ZP_04257491.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|229145816|ref|ZP_04274196.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229151413|ref|ZP_04279616.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|229179503|ref|ZP_04306856.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229185458|ref|ZP_04312640.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|296503743|ref|YP_003665443.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29896892|gb|AAP10170.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|118417752|gb|ABK86171.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196026405|gb|EDX65073.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206735927|gb|EDZ53085.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218161711|gb|ACK61703.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228598046|gb|EEK55684.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228604004|gb|EEK61472.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228631956|gb|EEK88582.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228637647|gb|EEK94097.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228654706|gb|EEL10566.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228666548|gb|EEL22006.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228679643|gb|EEL33840.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228685652|gb|EEL39575.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228702750|gb|EEL55215.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228712385|gb|EEL64330.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228806124|gb|EEM52700.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228837590|gb|EEM82920.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296324795|gb|ADH07723.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|326389116|ref|ZP_08210696.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206347|gb|EGD57184.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 229

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 8/152 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P++ +S   S++  ++  D G DD + KP    E++ARV AI RR          G + V
Sbjct: 75  PVLMLSALGSVKDRIEGLDGGADDYLTKPFDMDELVARVHAIARRAPARAAEEAQG-MNV 133

Query: 134 FSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
                DP      F      + R+   +L +LM +  + V +  +   ++G +  +   N
Sbjct: 134 GRLWLDPRRHAACFGEASVQVNRKLYSLLAHLMLHADRLVTRDMLLEQVWG-YTFSPGTN 192

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +VES++S+LR +L+ ++G DP++++R  GY +
Sbjct: 193 IVESNMSRLRTRLQ-EIGIDPIETQRGAGYVL 223


>gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396]
 gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396]
          Length = 229

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 9/137 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG------ 144
            D G DD + KP    E+LAR+ A +RR  +   +        + D +  +VQ       
Sbjct: 92  LDRGADDYIVKPFAIEELLARIRATFRRQDIEATKNAPSKASTYRDLK-LDVQNRAVVRG 150

Query: 145 -EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            E  PL +RE  +L  L++N  + + + ++   ++  +D+ +E NVV+ +I  LR K+  
Sbjct: 151 DEAIPLTKREFDLLNTLLSNMNQVMTREELLLQVWK-YDDVIETNVVDVYIRYLRGKIDI 209

Query: 204 KLGFDPVDSKRFLGYSI 220
                 + + R +GY I
Sbjct: 210 PGKESYIQTVRGMGYVI 226


>gi|299137820|ref|ZP_07031001.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600461|gb|EFI56618.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A    P++ ++   +    +   DSGVDD + KP    E+ AR+ A+ RR L  ++   +
Sbjct: 69  AKVSTPILMLTARDATSDVVRGLDSGVDDYLTKPFAFAELFARLRALGRRTLATASLSYQ 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              + +          G    L R E  +LE++M N    + +  I +A++G ++  VE 
Sbjct: 129 LEDLCLDPHTHIASRSGRAIMLTRTEFLLLEFMMRNPHTVLRREAIINAVWG-YEHTVEN 187

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N +++ + +LR K+    G   + + R  GY +
Sbjct: 188 NTLDAFMKQLRSKVDEGHGNKLIHTVRGFGYKL 220


>gi|291545612|emb|CBL18720.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 13/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR    N++A
Sbjct: 67  IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNHQA 126

Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
                 +   +++  + R        F LP +E  +L Y   ++GK + K QI+  ++G 
Sbjct: 127 GAVQKLDFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 186

Query: 180 --LFDEAVEENVVESHISKLRKKL 201
              +D++   N++ + IS+LRKKL
Sbjct: 187 EYFYDDS---NIM-AIISRLRKKL 206


>gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|228948817|ref|ZP_04111093.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810874|gb|EEM57219.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 222

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 59  EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 117

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 118 CNQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIRNKNTILSREMLLNQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 178 VWG-HNVVVNPNVVDLYIGYIRKKLKCEKKNRYIQTIHGRGYSM 220


>gi|223983562|ref|ZP_03633745.1| hypothetical protein HOLDEFILI_01026 [Holdemania filiformis DSM
           12042]
 gi|223964490|gb|EEF68819.1| hypothetical protein HOLDEFILI_01026 [Holdemania filiformis DSM
           12042]
          Length = 219

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 13/193 (6%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL   GY AL   DG +L           +++  +  +  I   ++  GE    L   IR
Sbjct: 20  ALTTAGYAALEMSDGRTL-----------IETLEQGGIDLILLDVMLPGEDGFTLLDKIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            + QVP+I +S    L   +    +G DD + KP    E+LARV ++ RR    N+  + 
Sbjct: 69  RY-QVPVIFVSARSQLADKVQALQAGADDYITKPFEMMELLARVESVLRRTGRKNSVLKF 127

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             + +  D R       V  L  +E  +  +L+ NR   + + +I   ++   D      
Sbjct: 128 QNLTIDEDQRQVYGPAGVIELTPKEFDLFVFLIRNRNIALYREEILEKVWH-DDYEGTTR 186

Query: 189 VVESHISKLRKKL 201
            V+ HI+ LRKKL
Sbjct: 187 TVDMHIASLRKKL 199


>gi|191638201|ref|YP_001987367.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Lactobacillus casei BL23]
 gi|190712503|emb|CAQ66509.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Lactobacillus casei BL23]
 gi|327382233|gb|AEA53709.1| hypothetical protein LC2W_1375 [Lactobacillus casei LC2W]
 gi|327385430|gb|AEA56904.1| hypothetical protein LCBD_1407 [Lactobacillus casei BD-II]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE VL     IR  S VP++ ++     Q T+     G +D + KP    E+LARV    
Sbjct: 59  GESVLT---TIRKTSSVPVLILTAIQDKQKTVALLQQGANDYLTKPFDIDELLARVQVQL 115

Query: 117 RR-LKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R+ L   + +A    + G I +        V  +   LP++E  +L  +M +  +   K 
Sbjct: 116 RQTLPAPSAKAQDHLQVGEITLNLKRHAVTVNNQPLTLPKKEYAMLALMMRDPHQVFDKQ 175

Query: 172 QIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           Q++  ++G  F  A  +N +  HIS LR K+ N L  DP
Sbjct: 176 QLYEQVWGEPFMNA--DNTLNVHISNLRTKI-NDLAKDP 211


>gi|170748302|ref|YP_001754562.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654824|gb|ACB23879.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 222

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 10/161 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+  A   +P++ ++     +  ++  D+G DD + KP    E++AR+ AI RR   +
Sbjct: 63  LRRLRAAEVALPVLILTARDGWRERVEGIDAGADDYLAKPFRMEELVARLRAILRR--TA 120

Query: 123 NNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + A     G + + +  R   V G    L   E R+L +L+   G+ V   ++   ++G
Sbjct: 121 GHAAPVLRAGAVELDTRTRAVSVDGRPAELTALEYRLLAFLLHRPGQVVPAGELLDHLHG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  E  E N +E+ +++LR+    KLG   ++++R  GY I
Sbjct: 181 VGTER-EANALEALLTRLRR----KLGPGVIETRRGQGYLI 216


>gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|86605140|ref|YP_473903.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86553682|gb|ABC98640.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 246

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETG 129
            P++ ++   +L   ++  D+G DD + KP   RE+LARV A+ RR         R + G
Sbjct: 77  TPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRAAGPGEGIPRLQIG 136

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +  + +    QG +  L ++E R+LEY MA+ G+ +   QI+  ++   ++    NV
Sbjct: 137 DLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYERVWA-GEDPPSSNV 195

Query: 190 VESHI 194
           + + +
Sbjct: 196 LAAQV 200


>gi|89893944|ref|YP_517431.1| hypothetical protein DSY1198 [Desulfitobacterium hafniense Y51]
 gi|219668318|ref|YP_002458753.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333392|dbj|BAE82987.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538578|gb|ACL20317.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR  S VP+I I+        +   D G DD + KP    E++AR+ AI RR  
Sbjct: 61  FEVCREIRKTSNVPIIMITARGEDFERIMGLDIGADDYIVKPFSPGEVMARIRAILRR-- 118

Query: 121 VSNNRAETGPIRVFSDGR----DPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIF 174
           +S N  E   I  +++      D  V  +  P  L ++E  IL  L  N  +  ++  + 
Sbjct: 119 ISQNDEEKKQILSYANLMINLDDYLVTIDQCPVSLTKKEIEILWTLATNHNRVFSRDNLL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
           ++++G +D   +   V+SHI +LR KL
Sbjct: 179 NSVWG-YDYFGDIRTVDSHIKRLRSKL 204


>gi|84494860|ref|ZP_00993979.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384353|gb|EAQ00233.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 12/168 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R I+A   VP++ ++        L     G DD V KP   RE++AR  A+ RR++
Sbjct: 61  LEVCRRIQAIRPVPVLMLTARDEETDILVGLGVGADDYVTKPFRMREVVARTHALLRRVE 120

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   A T       G I +    R   V G+   L   E  +L  L +  G   ++ Q+
Sbjct: 121 RAAELASTPAPTTHVGAIEIDGPARRVTVDGQDVHLTPLEFDLLAALASTPGAVRSREQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G  D A     ++SH+    K LR K+G   V +   +GY+++
Sbjct: 181 MGEVWGWAD-ASGTRTLDSHV----KSLRAKIGAARVRTVHGVGYALE 223


>gi|331268490|ref|YP_004394982.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
 gi|329125040|gb|AEB74985.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 5/142 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I I+        +   + G DD + KPI  +E+LAR+ A+ RR   +N   
Sbjct: 62  IRRKSDIPIIFITACDEEANIVLGLEIGGDDYITKPIRIKEMLARINAVLRRKSTANKEQ 121

Query: 127 ETGPI---RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            T  I    +  D    +V    E   L   E ++L   M N+   V +  +   I+ + 
Sbjct: 122 STKTIVSGDIVVDILKIKVYKNNEEIILTPAEYKLLVIFMKNKNNVVTRGTLLEKIWDVD 181

Query: 182 DEAVEENVVESHISKLRKKLRN 203
            E V+ N V  ++ +LR+K+ +
Sbjct: 182 GEFVDSNTVNVYVKRLREKIED 203


>gi|322378815|ref|ZP_08053241.1| putative transcriptional regulator [Helicobacter suis HS1]
 gi|322380144|ref|ZP_08054392.1| transcriptional regulator [Helicobacter suis HS5]
 gi|321147449|gb|EFX42101.1| transcriptional regulator [Helicobacter suis HS5]
 gi|321148739|gb|EFX43213.1| putative transcriptional regulator [Helicobacter suis HS1]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 14/222 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+++ A +     A   +    ++   +LE  E+  S    D+  I +  +  G  + 
Sbjct: 3   ILLVENNADLSKEISAYLSEKSFQVDVAENLEDGEYYISIRNYDLVLI-SLELSDGNGLS 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +P     H+ +  I +++  S +  +  F  GVDD + KP     ++AR+ A  R    
Sbjct: 62  LVPYAKAKHASIVSIMLANNASSEQEIKAFKEGVDDFIAKPFDLGVLVARIEARLRFWGS 121

Query: 122 SNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S    E   I     ++   G++ EV+G+ F        +L +L  +R + V+K Q+  A
Sbjct: 122 SIIEIEDLVINPDEEKIVYKGKEIEVKGKPF-------EVLTHLARHRDQIVSKEQLLDA 174

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I+    E V  NV+E  I+++R+K+   LG   V++ R  GY
Sbjct: 175 IWE-EPELVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 215


>gi|315655078|ref|ZP_07907980.1| phosphate regulon response regulator [Mobiluncus curtisii ATCC
           51333]
 gi|315490559|gb|EFU80182.1| phosphate regulon response regulator [Mobiluncus curtisii ATCC
           51333]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 108/230 (46%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G +  GF   +++E+ ++        I   ++  G   
Sbjct: 1   MIYFVEDDLNIRDLVVYTLGSTGFTARGFA--DYQEFREAMMELLPEMILLDIMLPGVDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R IRA+ +   +P+I ++   +    +   D G DD + KP    E+++R+ A+ R
Sbjct: 59  IQILRRIRANPETEGIPVIMVTAKGAEFDKVKSLDLGADDYITKPFGMMELVSRIRAVLR 118

Query: 118 RL-KVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R+ ++++  AE       G I +        V+G    L  +E ++LE LM+  G   ++
Sbjct: 119 RVARLTDPTAEDEEILTIGTIDLNLPRHTVAVEGREVKLTLKEYQLLEELMSQPGILFSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +I+G +        V+ HI  LRKKL        +++ R +GY I
Sbjct: 179 DKLLDSIWG-YSFHGGTRTVDVHIRTLRKKLGP--AAKHIETVRGVGYKI 225


>gi|301056578|ref|YP_003794789.1| putative two-component response regulator [Bacillus anthracis CI]
 gi|300378747|gb|ADK07651.1| putative two-component response regulator [Bacillus cereus biovar
           anthracis str. CI]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I +S   +    +   + G DD V KP +   ++A++ A+ RR   S  
Sbjct: 64  RKIREVSKVPIIFLSSRDNPMDMVMAMNMGGDDFVQKPFYTDVLVAKIQALMRR-TYSYT 122

Query: 125 RAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ET  +    V  + +  EV    ++  L + E +IL+ LM N G  V++  I   ++ 
Sbjct: 123 QTETNVVEYEGVVLNLQSGEVTYHNQILELTKNEFKILQILMQNIGSIVSRDNIMRKLWE 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  V++N +  +++++RKKL      + + +K+  GY I
Sbjct: 183 -NESFVDDNTLTVNVARVRKKLAELGKEEFIHTKKGQGYII 222


>gi|299145538|ref|ZP_07038606.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|298516029|gb|EFI39910.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 11/160 (6%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           I R +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  V+ N 
Sbjct: 67  IRRTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR--VAGNA 124

Query: 126 AETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            E     V++D R      D E       L  +E  +L Y++ N  + +++ +I   ++ 
Sbjct: 125 QELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVWN 184

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             FD     N ++ +I+ LRKK+        + +K  +G+
Sbjct: 185 THFDTGT--NFIDVYINYLRKKIDRDFEPKLIHTKAGMGF 222


>gi|289626740|ref|ZP_06459694.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289648659|ref|ZP_06480002.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487563|ref|ZP_07005605.1| Two-component system response regulator QseB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298157947|gb|EFH99025.1| Two-component system response regulator QseB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|330870522|gb|EGH05231.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 222

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 24/227 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++     +  + +   A E    I   L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLA--DGRDAVYQGATEPYDLIVLDLGLPGMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ +  R      P++ ++   S    ++   SG DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWSERIEGLKSGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+ +    + G   V  DG D ++    F       R+L Y M + G+ ++K+
Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEF-------RLLRYFMLHPGQILSKS 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   +Y   +E  + NV+E H++ LR+    KLG   V+++R  GY
Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215


>gi|326316348|ref|YP_004234020.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373184|gb|ADX45453.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   LE+ R  R  +  P+I ++        L   + G DD + KP   RE++ARV  + 
Sbjct: 62  GMDGLEVLRQARRRTDRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVL 121

Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR     +  A+  P+ +        ++G    L  RE R+L+ L ++ G+  ++ Q+  
Sbjct: 122 RRSTARPSPAAQDAPLVLDEAFWQVHLRGTPVSLTPREFRLLQALASHSGRIFSRAQLLD 181

Query: 176 AIYGLFDEA--VEENVVESHISKLRKKLRNKLGFD 208
             Y   D+   V E  ++SHI  LR+KLR   G D
Sbjct: 182 MAY---DDTLDVNERAIDSHIKNLRRKLRAADGSD 213


>gi|260664969|ref|ZP_05865819.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561023|gb|EEX26997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
          Length = 237

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +   +A+           G + +  D    E  G+   L  RE  +L YL ++ G+ + +
Sbjct: 122 IVQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +    +G +D   +   V+  + +LR+K+  N +    + ++R +GY +
Sbjct: 182 EHLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYV 231


>gi|260548814|ref|ZP_05823036.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407982|gb|EEX01453.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+
Sbjct: 61  LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179
                 +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I   
Sbjct: 121 RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            FD  V + V++SHI  LR+K+
Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200


>gi|229075211|ref|ZP_04208205.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|228707988|gb|EEL60167.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|225575437|ref|ZP_03784047.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037382|gb|EEG47628.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 18/166 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L +I +  +  P++ ++   S++  +   D G DD + KP    E+LAR+  + R+    
Sbjct: 63  LQKIRKEGTSTPVLLLTAKDSIEDRVTGLDLGADDYLVKPFAFEELLARIRVMLRKSAAV 122

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 +K++N   +    RVF D  + E       L  +E  IL Y+  N+G  +++ +
Sbjct: 123 ETNTNVVKIANLTVDLNTHRVFRDETEIE-------LSNKEFSILRYMCMNKGVVLSRDK 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I   I+  +D A   NVV+ +I  LR+K+ +      + + R  GY
Sbjct: 176 IEEHIWN-YDYAGASNVVDVYIRYLRRKIDDSYEPKLIHTIRGAGY 220


>gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060175|ref|YP_003138063.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 243

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++      
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGVPG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVLQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
 gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 96/203 (47%), Gaps = 16/203 (7%)

Query: 27  EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF+++   +  + + ++   D   I   ++  G   +++ R +R  S VP++ ++    
Sbjct: 25  EGFDTVVVGDGNDAVTAAQEHDPDLILLDVMLPGMSGIDVCRTVREFSTVPIVMLTARTD 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDP 140
               +   +SG DD + KP   +E++ARV A  RR     + + T   G + + + G + 
Sbjct: 85  TVDVVLGLESGADDYITKPFKPKELIARVRARLRRSPEEADESTTIRVGEVEIDTAGHEV 144

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
              GEV  L   E  +L  L +  G+  ++ ++   ++G + ++ +  +V  H+ +LR K
Sbjct: 145 TRGGEVINLTPIEFDLLTTLASRPGQVFSREELLEKVWG-YRKSGDTRLVNVHVQRLRSK 203

Query: 201 LRNKLGFDPVDSK-----RFLGY 218
           +      DP D +     R +GY
Sbjct: 204 VER----DPDDPQVVLTVRGIGY 222


>gi|126649404|ref|ZP_01721645.1| YxdJ [Bacillus sp. B14905]
 gi|126593729|gb|EAZ87652.1| YxdJ [Bacillus sp. B14905]
          Length = 234

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 9/161 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R +R H+  P+I IS        +   ++G DD + KP ++  +LA++ +  RR      
Sbjct: 67  RQLRQHTTCPIIFISARSGEMDQIFALENGGDDFITKPFNYEIVLAKIRSHLRRTYGEYA 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      + G + +  +  +        PL ++E  ILE LM N  K V + Q+   ++
Sbjct: 127 TRQEERTIKQGQLILHLERMELHKNELEIPLQKKECIILELLMGNAPKVVTREQLLEELW 186

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D+A V+EN +  +++++RKKL +      +++ R  GY
Sbjct: 187 D--DQAFVDENTLNVNMTRVRKKLADYQIASTIETVRGAGY 225


>gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8]
 gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 11/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S VP++ ++    ++  +   D+G DD + KP    E+LARV A  RR+ 
Sbjct: 66  IEVAKRIRKTSNVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRRV- 124

Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                A TG IRV       +GR+         L  +E  +LE L  N GK  ++ +I  
Sbjct: 125 ---TPAITGEIRVADLIINLEGREVFRGNRRIELSNKEFELLELLAKNPGKVFSRYEIEE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NVV+ +I  LRKKL        + + R +GY +
Sbjct: 182 KVWPGYQGG--SNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 224


>gi|47568723|ref|ZP_00239419.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47554617|gb|EAL12972.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 65  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     D +++ R +GY   I W+
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLHIEDAIETIRSVGYRLHITWD 230


>gi|331086634|ref|ZP_08335711.1| hypothetical protein HMPREF0987_02014 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409800|gb|EGG89235.1| hypothetical protein HMPREF0987_02014 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 1/153 (0%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I ++        +  F  G DD + KP     + ARV  +  R+       
Sbjct: 69  IRRESEVPVIMLTANDLEIDQVTGFSLGADDYITKPFSLMILRARVERMLARMAQDKGLT 128

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E    R   +     V+G+   L + E+++L  L+ ++G+ + + Q+   I+    + V
Sbjct: 129 YEKDGYRFVFEQMYFTVEGKEVTLSKTEQKLLRILIEHQGQTLTREQLVDRIWSDGAQYV 188

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           EEN +   + +LRKKL      +P+ +   LGY
Sbjct: 189 EENALSVTVGRLRKKLEQTGKKNPIQTVYGLGY 221


>gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 241

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 23/218 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAFLIG-KGE 58
            +L++D   ++D   A    +G  + G    +   EE+ + S   D+  ++  L    GE
Sbjct: 8   ILLVEDEKAIRDAVAAYLEREGYVVRGVGDGQSALEEFEKHSF--DLIVLDLMLPKLSGE 65

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +V    R +R  S VP+I ++    ++  +   + G DD V KP   RE++ARV A+ RR
Sbjct: 66  RVC---RAVRETSSVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRR 122

Query: 119 LKVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              ++  AE        G + +   G    V+G    L   E ++L  L    G+   + 
Sbjct: 123 ---AHAEAEPQLEVLDFGDLVIDISGHKVMVEGSEVDLTASEFKLLTTLARYPGRVYTRM 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           ++   + G +D    E  ++SH+    K LR KLG DP
Sbjct: 180 ELVEKVLG-YDFEGYERTIDSHV----KNLRAKLGDDP 212


>gi|260682198|ref|YP_003213483.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile CD196]
 gi|260685797|ref|YP_003216930.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile R20291]
 gi|260208361|emb|CBA60855.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile CD196]
 gi|260211813|emb|CBE02200.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile R20291]
          Length = 220

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR     P+I +S   S    +     G DD V KP   RE++AR+ A  RR K
Sbjct: 50  FEVCQAIRDDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREK 109

Query: 121 VSN-----NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            S      N+  T   G + ++   R  ++ G+   L + E  I+E L  + G+  ++ Q
Sbjct: 110 RSQYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQ 169

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I+  ++G   E     VVE  + K+R K 
Sbjct: 170 IYEKVWGCDSEGDSSTVVE-RVKKIRAKF 197


>gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
 gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
          Length = 299

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 65  RIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---- 119
           R +RA H   P+I ++        L   + G DD V KP   RE++ARV A+  R     
Sbjct: 136 REMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMPRS 195

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S+     G + + +      V GE   L  +E  +L +L +N+G  +++ +I   ++ 
Sbjct: 196 EASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKVWN 255

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E+  V++H+  LR  L    G+  + +   +GY  D
Sbjct: 256 -YDYFGEDRTVDTHVKMLRGHLGKCRGY--IATVWGIGYKFD 294


>gi|242372891|ref|ZP_04818465.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349375|gb|EES40976.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 7/159 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+    V
Sbjct: 64  RKMRQESNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFGV 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R       V    +D   +G+    L + E  ILE L+  + + V +  + +A++  
Sbjct: 124 EEKRTLNWQDTVVDLSKDSIQKGDKTIFLSKTEMIILEMLINKQNQIVTRDTLITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DEA V +N +  ++++LRKKL +    + +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLADINMDEAIETKVGKGY 220


>gi|229167840|ref|ZP_04295572.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228615656|gb|EEK72749.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 228

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 7/148 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +      S
Sbjct: 64  VCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYTS 123

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +   +  I V    R   +  +   L   E  IL Y M N+G  +++ Q+ + 
Sbjct: 124 TVNVSIEDTLTSSGIHVHFPSRTVNIDEKEINLTHTEFEILTYFMQNQGIVISREQLINK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           I+G ++ A ++  V SHI  LR KL  K
Sbjct: 184 IWG-YEFAGDDRTVNSHIRNLRHKLGQK 210


>gi|284028904|ref|YP_003378835.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283808197|gb|ADB30036.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 221

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 8/163 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           + + R IR  S VP+I ++        +    SG DD V KP    E+LAR+ A+ RR  
Sbjct: 61  INVCRQIRTVSDVPVIAVTARGEAADRVRGLRSGADDYVVKPFAISELLARIDAVLRRTG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L     R   G + V  + R  +V  +   L R+E  +L  L A+ G+ V + Q+    +
Sbjct: 121 LLQPRPRVTVGDLTVDIEARTVQVADKPISLTRKEFDVLAVLAAHHGRVVPREQVALYAW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
               EA     ++ H++ LR KL R +L    V + R +GY +
Sbjct: 181 QSVFEA-SSRTMDVHVASLRAKLGRPEL----VQTIRGVGYRL 218


>gi|196032134|ref|ZP_03099548.1| transcriptional regulatory protein VanRB [Bacillus cereus W]
 gi|218904325|ref|YP_002452159.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus cereus AH820]
 gi|195994885|gb|EDX58839.1| transcriptional regulatory protein VanRB [Bacillus cereus W]
 gi|218538575|gb|ACK90973.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus cereus AH820]
          Length = 220

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+ N G+ ++   I S ++G +
Sbjct: 123 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL + +    + + R +GY ++
Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPDNI----IKTVRGVGYRLE 217


>gi|219849054|ref|YP_002463487.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543313|gb|ACL25051.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 247

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 6/140 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S VP++ I+        +  F  G D+ + KP    E +ARV AI RR+ +   R 
Sbjct: 86  IRAKSDVPIVIITARDGTDDIVQGFRRGADEYITKPFRVAEFVARVEAILRRVDMQKART 145

Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + + +      V+G    L   E  +L +L AN G+   +  +F  ++G +
Sbjct: 146 APPLVHVGDLVIDATAHKVSVRGAEVKLTPMEFELLYFLAANAGQVFTREVLFREVWG-Y 204

Query: 182 DEAVEENVVESHISKLRKKL 201
           +   E N+V+  + +LR+K+
Sbjct: 205 EYIGETNLVDVCVRRLREKV 224


>gi|89897137|ref|YP_520624.1| hypothetical protein DSY4391 [Desulfitobacterium hafniense Y51]
 gi|89336585|dbj|BAE86180.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 237

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 8/182 (4%)

Query: 27  EGFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF  +  ++    L +  RE+   +   ++  G+  L L R +RA   +P+I ++    
Sbjct: 27  EGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLSLCRRLRAVRMIPIIMLTAKGE 86

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRAETGPIRVFSDGRD 139
               +   + G DD V KP   RE++AR+ A+ RR +     +N + +   + + +D R 
Sbjct: 87  EADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAADPATNWQLKYPGLEIRADIRK 146

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             V      +  RE  +L +L  N  +   + ++  A++G +D   ++  V+ HI +LR 
Sbjct: 147 VLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVWG-YDYFGDQRTVDVHIRRLRT 205

Query: 200 KL 201
           KL
Sbjct: 206 KL 207


>gi|115360068|ref|YP_777206.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115285356|gb|ABI90872.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 221

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 95/182 (52%), Gaps = 11/182 (6%)

Query: 43  REDVSAIEAFLIG-KGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           R D+  ++A L G  G  VL   R +RA  S  P++ ++   ++   +     G DD + 
Sbjct: 44  RFDLVVLDANLPGLDGFTVL---RNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLV 100

Query: 101 KPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
           KP  +RE+ ARV A+ RR     N   T G + +    R  E+ G+   L R+E  +LE 
Sbjct: 101 KPFDYRELEARVQALLRRNSGHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLE- 159

Query: 160 LMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++A+R +R+ +K ++ + ++   +E    N VE +++++R+KL+       + + R +GY
Sbjct: 160 ILASRPQRIFSKDELLNQLFSFGNEP-SANAVEQYVTRVRRKLQGS--SVEIRTARGMGY 216

Query: 219 SI 220
            I
Sbjct: 217 QI 218


>gi|219667004|ref|YP_002457439.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537264|gb|ACL19003.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 237

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 8/182 (4%)

Query: 27  EGFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF  +  ++    L +  RE+   +   ++  G+  L L R +RA   +P+I ++    
Sbjct: 27  EGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLSLCRRLRAVRMIPIIMLTAKGE 86

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRAETGPIRVFSDGRD 139
               +   + G DD V KP   RE++AR+ A+ RR +     +N + +   + + +D R 
Sbjct: 87  EADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAADPATNWQLKYPGLEIRADIRK 146

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             V      +  RE  +L +L  N  +   + ++  A++G +D   ++  V+ HI +LR 
Sbjct: 147 VLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVWG-YDYFGDQRTVDVHIRRLRT 205

Query: 200 KL 201
           KL
Sbjct: 206 KL 207


>gi|94312862|ref|YP_586071.1| DNA-binding response regulator [Cupriavidus metallidurans CH34]
 gi|93356714|gb|ABF10802.1| DNA-binding response regulator in two-component regulatory system
           [Cupriavidus metallidurans CH34]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 4/202 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    I   GD G  ++     E    + ++A  D+  ++  L GK +  L
Sbjct: 3   LLLVEDHPDLAALVIKSLGDSGFVIDHAVDGEAALLMIATASYDLILLDLSL-GKVDG-L 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR      P++ ++    +   +   D G DD + KP    E+ AR+ A  RR +
Sbjct: 61  DVLRSIRTQGVTTPVLILTARSEIADRILGLDLGADDYIAKPFDLGELEARIKAQLRRRQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G +   S  R    +G    L RRE  +LE L    G+   +  +F  ++ +
Sbjct: 121 GGQPVTTYGGLSFDSVERSFYCEGTALTLSRRELAVLEALFLRAGRVATRDVLFQCVFSI 180

Query: 181 FDEAVEENVVESHISKLRKKLR 202
            DE V    +E ++S++RKKL+
Sbjct: 181 DDE-VNPETIELYVSRVRKKLK 201


>gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
 gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
          Length = 243

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 26/225 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  +   DG++            +  + ++    I   L+  G   +++ R +R 
Sbjct: 22  LEKEGYQVICAFDGIT-----------AVDIAVKQQPDLILLDLMLPGMDGMDVCREVRG 70

Query: 70  HS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSN 123
           H  Q P+I ++        +   + G DD V KP   RE+LARV A  RR +      S 
Sbjct: 71  HQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQRGGASASE 130

Query: 124 NRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +R +        G +   +D       G    L  RE  +L Y+  N GK + +  +  A
Sbjct: 131 SRPQEDKQGLRVGDLFFDTDMYTAYKNGTPLDLTHREYELLHYMAKNAGKVMTREHLLQA 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++G F+   +   V+  I +LR+K+  N    + + ++R LGY +
Sbjct: 191 VWG-FEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGYIV 234


>gi|289424081|ref|ZP_06425867.1| transcriptional regulatory protein ResD [Peptostreptococcus
           anaerobius 653-L]
 gi|289155506|gb|EFD04185.1| transcriptional regulatory protein ResD [Peptostreptococcus
           anaerobius 653-L]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 15/146 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           ++IR  S+VP+I +S   +    L  ++ G DD + KP     ++ +V A+ +R      
Sbjct: 68  KMIRNTSKVPIIFMSALNAENDQLKGYELGCDDYITKPFSFNLLVKKVEAVLKR------ 121

Query: 125 RAETGPIR--VFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +ET P    VF       D     + G    L  +E  IL+ L+    + + +  +   
Sbjct: 122 TSETSPTNSIVFDKMHLDLDTYSISIDGNTVELTLKEFNILKTLIEKYPQIITRESLLDQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202
           I+G +D   +  +V++HI  +RKKL+
Sbjct: 182 IWG-YDYYGDTRIVDAHIKNIRKKLK 206


>gi|282883260|ref|ZP_06291858.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus lacrimalis 315-B]
 gi|300814336|ref|ZP_07094608.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|281296890|gb|EFA89388.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus lacrimalis 315-B]
 gi|300511603|gb|EFK38831.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR---AETGPIRVFSDGRDPEVQGEVF 147
            D G DD + KP    E+L+RV AI RR   +N+     +   I + +  R   +  +V 
Sbjct: 93  LDLGADDYIKKPFSVMELLSRVGAIERRANTTNSNEKFIKFNGIVIDNLKRLVTIDEKVV 152

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
               +E  +L+YL+ N+   +++ ++ + I+G +D   E   V+ HI  LR KL +K  +
Sbjct: 153 NFTFKEYELLKYLILNKDIVISREKLLTYIWG-YDYEGETRTVDMHIKLLRDKLGDKRKY 211

Query: 208 DPVDSKRFLGYSI 220
             + + R +GY +
Sbjct: 212 --IKTIRGVGYML 222


>gi|229522924|ref|ZP_04412338.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229340141|gb|EEO05149.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L L + IRA  +QV ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR 
Sbjct: 60  LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   L+ ++       +RV+   +  E       L  +E  ILE  +   G   ++
Sbjct: 120 IQTHTSNKLRFADLELCLSTMRVYRADQPIE-------LTAKEISILELFLRKPGHIFSR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +I + ++G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 173 ERILANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|218134085|ref|ZP_03462889.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991460|gb|EEC57466.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
           43243]
          Length = 240

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 18/177 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++  
Sbjct: 62  LEVLRRLRRTSNLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRRALKKSS 121

Query: 121 VSNNRAETG---------PIRVFSDGRDP--------EVQGEVFPLPRRERRILEYLMAN 163
           +++     G          +    DGR           V      L +RE  +L+ L+ N
Sbjct: 122 MADGAGTDGRSADDVKEAAVLANGDGRVKLDKKQHIVTVDCNNVELTQREFAMLQTLLEN 181

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               +++  +   + G +D   E N+V+ ++  LR K+ +  G   + + R +GY I
Sbjct: 182 MDIVLSRETLLDKVCG-YDYVGETNIVDVYVRYLRSKIDDAFGIKLIQTVRGVGYVI 237


>gi|149377595|ref|ZP_01895334.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
 gi|149358137|gb|EDM46620.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
          Length = 233

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VLI+D   +++ Y   F   G  +  +        +  +A  D++ I+  L  + E   
Sbjct: 5   IVLIEDEPAIRENYRDAFERRGYRVSAYGDRTSAFQVLRTALPDLAIIDVGLGDEPEGGF 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + +R+ S+ +P+I ++   S   ++     G DD V K +    +LARV A+ RR  
Sbjct: 65  TLCQDLRSLSKTLPIIFLTARDSDIDSVHGLRLGADDYVTKDMSMDHLLARVTALLRRAD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                LK  +     G + +  D    E  G+   L   E  +L  L+ + G   ++ Q+
Sbjct: 125 AWAEALKQPDEVVHRGRLALNVDRMTAEWNGQPIDLTVTEFWMLHSLVQHPGHVRSRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
             A   + D    +N V SHI ++R+K L+    FD + +   +GY   WN
Sbjct: 185 MEAASTVLD----DNTVTSHIKRIRRKFLQIDDAFDGIHTAYGMGYR--WN 229


>gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 239

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 25/223 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR- 68
           L ++GY  L      +L+G   LE    L  + R D+  ++  L   G   LE+ R +  
Sbjct: 21  LEREGYQVL-----TALDGPQGLE----LARAERPDLIVLDVML--PGMNGLEVCREMHR 69

Query: 69  --AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
             A   +P+I +S        +   + G DD + KP   RE++AR+ A  RR++      
Sbjct: 70  DAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARLRRIQKEEGRE 129

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V   R + G + +  +     V G    L  +E  +L +L    G+  ++ Q+   +
Sbjct: 130 REAVPGGRLDFGRLVIDEEKFAVYVDGVKVDLTPKEFELLRFLARQPGRVFSREQLLEQV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
           +G +D A +   V+ HI  +R+KL R      P+++ R +GY 
Sbjct: 190 WG-YDYAGDSRTVDVHIRHIRQKLGRLSESDQPIETVRGVGYC 231


>gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|157158031|ref|YP_001464487.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           E24377A]
 gi|157080061|gb|ABV19769.1| transcriptional regulatory protein QseB [Escherichia coli E24377A]
          Length = 215

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 15/222 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R  R   Q  P++ ++   +L+  ++    G DD + KP      L  + A+ RR 
Sbjct: 63  L---REWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPF----ALIGLEALMRRT 115

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y
Sbjct: 116 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 175

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE V  N VE H+  LR+    KLG D + +   +GY++
Sbjct: 176 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 212


>gi|330966499|gb|EGH66759.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 220

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 24/218 (11%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL  +GY   + +DG+S    ++L  E +        +  ++ F         +L R +R
Sbjct: 19  ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67

Query: 69  AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           A    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR   S  RA 
Sbjct: 68  AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SRGRAQ 124

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   I +    +    QG    +   E ++L  LM   GK V + ++ + +YG + +
Sbjct: 125 PLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            VE N +E  I  LRKKL  +L    + + R +GY ++
Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217


>gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I + +  VP++ ++   S++  +   D+G +D + KP    E+LAR+  + RR + S
Sbjct: 63  LREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPEKS 122

Query: 123 NNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +               +VF DG++ ++ G+ F L R       Y++ N+G  +++ ++ 
Sbjct: 123 EDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLR-------YMIQNKGIVLSREKLE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +D A   NV++ +I  LRKK+        + + R  GY +
Sbjct: 176 QHLWN-YDYAGGSNVIDVYIRYLRKKIDESFKEKLIHTVRGAGYVL 220


>gi|329941681|ref|ZP_08290946.1| putative two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299398|gb|EGG43298.1| putative two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ ++   ++   +D  D+G DD + KP    E+ AR+ A+ RR   + +    G  
Sbjct: 78  RTPVLMLTGMGAVNDRIDGLDAGADDYLVKPFDLDELSARLRALCRRAHDTADVLSIGSG 137

Query: 132 RVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           R+F   R+ E+  GE  PL  RE  +L  L ++    +++ Q+   +   F EA   ++V
Sbjct: 138 RLFVGRREVELADGEQVPLAAREFALLWVLASHPDAVLSRAQLRRLV---FQEAPASSIV 194

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++++  LR+KL  K+    V + R  GY +
Sbjct: 195 DTYVYYLRRKLGRKV----VRTVRGAGYRL 220


>gi|317490055|ref|ZP_07948545.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|316910846|gb|EFV32465.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 243

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 32/243 (13%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            V+I+D A + +        +G +  + F+  E    L  S   D+   +  L G  GE 
Sbjct: 7   IVIIEDDADINEVVAVHLRRNGFACTQAFSGSEGRLLLSGSEPFDLVITDLMLPGMAGED 66

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           V+   R++RA   +P+I +S   +    +     G DD + KP    E+LARV    R  
Sbjct: 67  VV---RLVRARGDMPVIVMSARTTAADKVALLKLGADDYLTKPFDLDELLARVQVQLRHA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPE----------------------VQGEVFPLPRRERRIL 157
            V    A   P    SD R PE                      V+ E   L R E  IL
Sbjct: 124 DVRRASASGAP----SDERLPEPAAATAMRYKDWTLDVDARTLSVREEPVRLTRLEFNIL 179

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           E L+    K   K ++F   +   + AVEE  +  H+S +R KLR       +++   +G
Sbjct: 180 EALVRRPRKVFTKRELFEIAWN-EESAVEEKAINVHVSNIRSKLRAAHSAGEIETVWGIG 238

Query: 218 YSI 220
           + +
Sbjct: 239 FKL 241


>gi|289705357|ref|ZP_06501753.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557872|gb|EFD51167.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 254

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 20/228 (8%)

Query: 3   VLIDDRALVKD----GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-G 57
           +++DD  ++ D    G+     +  V+ +G  ++E    L ++ R D++ ++  L    G
Sbjct: 34  LVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVE----LGAAGRPDLAILDVMLPDMDG 89

Query: 58  EKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
             VLE    +RAH S++P + ++   + +  +    +G DD V KP    E+L R   + 
Sbjct: 90  LDVLER---LRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLV 146

Query: 117 RRLKVSNNRAETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +R  V +  +E   +  +  + R  EV   G+   L   +  +L++LMAN    ++K +I
Sbjct: 147 QRSGVVSGGSEVLVVGDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERI 206

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              ++G +D     N+VE +IS LRKK+      DP + + R  GY I
Sbjct: 207 LQDVWG-YDFGGRANIVELYISYLRKKIDAD--RDPMIHTVRGAGYVI 251


>gi|295688435|ref|YP_003592128.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295430338|gb|ADG09510.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  R +   P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ 
Sbjct: 59  GVSVLE--RWRRGNIATPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALL 116

Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              + S   A      G +R+        V GE   L   E R+L Y+M ++G+ + +T+
Sbjct: 117 ---RRSAGHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTE 173

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +Y   FD   + N +E  I +LRK    KLG + +++ R LGY +
Sbjct: 174 LVEHLYDQDFDR--DSNTIEVFIGRLRK----KLGAERIETVRGLGYRL 216


>gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
 gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
          Length = 232

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP   RE++ARV A+ RR    N  +++   G I V  +       GE   L 
Sbjct: 99  GADDYITKPFSVREMVARVKAVLRRRTTINIESKSYILGNIVVDFEKHSLTKAGEKIELT 158

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +E  +LE L+ N+GK + +  +   I+G ++   E   V+ HI  LRKK+ +
Sbjct: 159 LKEFELLEVLIKNKGKVMTRDFLLDRIWG-YEYIGETRTVDVHIRHLRKKIED 210


>gi|167839646|ref|ZP_02466330.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           MSMB43]
          Length = 229

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 17/217 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           + L + G++A + +DGV+  G +  E EE+       D+  ++  L G  G  VLE    
Sbjct: 18  KGLTEAGFVADWVEDGVT--GLHQAETEEY-------DLIILDVMLPGHDGWTVLER--- 65

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R     P++ ++    +   +   + G DD V KP    E++ARV +I RR +   +  
Sbjct: 66  LRRERSTPVLFLTASDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQARESTV 125

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
                + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ + F+  
Sbjct: 126 LRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDMNFNS- 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + NVV++ I +LR K+ +      + + R +GY ++
Sbjct: 185 -DTNVVDAAIRRLRAKIDDAYEPKLIHTVRGMGYVLE 220


>gi|254284870|ref|ZP_04959836.1| transcriptional regulator [Vibrio cholerae AM-19226]
 gi|150424873|gb|EDN16650.1| transcriptional regulator [Vibrio cholerae AM-19226]
          Length = 224

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L L + IRA  +QV ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR 
Sbjct: 60  LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   L+ ++       +RV+   +  E       L  +E  ILE  +   G   ++
Sbjct: 120 IQTHTCNKLRFADLELCLSTMRVYRADQPIE-------LTAKEISILELFLRKPGHIFSR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +I + ++G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 173 ERILANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|83749289|ref|ZP_00946288.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|207725205|ref|YP_002255601.1| two-component system response regulator protein [Ralstonia
           solanacearum MolK2]
 gi|207743580|ref|YP_002259972.1| two-component system response regulator protein [Ralstonia
           solanacearum IPO1609]
 gi|83724070|gb|EAP71249.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|206590439|emb|CAQ37401.1| two-component system response regulator protein [Ralstonia
           solanacearum MolK2]
 gi|206594979|emb|CAQ61906.1| two-component system response regulator protein [Ralstonia
           solanacearum IPO1609]
          Length = 237

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFP 148
           +G DD V KP+   E++ARV A+ RR+      S  R   GP  V   GR   + G    
Sbjct: 96  AGADDYVVKPVRRAELVARVGALLRRVAPRTGESLERMRVGPYGVDPLGRVLTLHGSQVE 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L  RE  +  YL  N GK V +  I  A++G      +   + +HISKLR KL
Sbjct: 156 LSPREFDLALYLFRNVGKLVPRELIEQAVWG-RSIGPDSRTLATHISKLRLKL 207


>gi|46143552|ref|ZP_00204506.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208535|ref|YP_001053760.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae L20]
 gi|190150390|ref|YP_001968915.1| QseB family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250189|ref|ZP_07336391.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253361|ref|ZP_07339510.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|126097327|gb|ABN74155.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915521|gb|ACE61773.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648043|gb|EFL78250.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302651252|gb|EFL81406.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 221

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 6/149 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAETGPI 131
           +P++ ++   +L   +  F+SG DD + KP    E++ R+ A I RR K S+     G +
Sbjct: 73  IPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRLQALIRRRYKQSSTEITLGDL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            + S      +  +   L  +E ++L    +N+ + + ++ I   +Y  +D  V  N +E
Sbjct: 133 TIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRSAIEEKLYS-WDNDVSSNAME 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +I  LRK    KLG + + +   +GY I
Sbjct: 192 VYIHNLRK----KLGKEWIKTVHGIGYKI 216


>gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 5/143 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           R IR  S +P+I ++        +   + G DD + KP + RE++AR+ A+ RR      
Sbjct: 65  REIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATNPYI 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G + +    R    +G+   L  +E  IL  L +N GK   K ++   I+G 
Sbjct: 125 KRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLIWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
           FD   + N V  H+ KLR+K+ +
Sbjct: 184 FDFYGDTNTVTVHVRKLREKIED 206


>gi|325963065|ref|YP_004240971.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469152|gb|ADX72837.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 246

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 7/163 (4%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           R DV  ++  L   G   +EL   IRA + +VP + ++   ++Q  +    +G DD V K
Sbjct: 65  RPDVLVLDVML--PGFDGVELLGRIRAFAPEVPALFLTAKDAIQDRIVGLAAGGDDYVTK 122

Query: 102 PIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           P    E+L R+  + +R  V+  + AE   G + +  D R+    G+   L   +  +L 
Sbjct: 123 PFSMEEVLLRLHRLVQRSGVAAMDTAELVVGDLVLNVDTREVTRAGQDVQLTATQFELLR 182

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           YLM N  + ++K QI   ++  +D   + N+VE +IS LRKK+
Sbjct: 183 YLMENPKRVISKAQILDRVWN-YDFGGQANIVELYISYLRKKI 224


>gi|310826825|ref|YP_003959182.1| DNA-binding response regulator [Eubacterium limosum KIST612]
 gi|308738559|gb|ADO36219.1| DNA-binding response regulator [Eubacterium limosum KIST612]
          Length = 231

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           ++ R +R HS+VP+I ++        +   D G DD + KP +  E+++R+ A+ RR  K
Sbjct: 64  DICRSVRRHSEVPIIFLTASDEEVNVVMGLDIGGDDYITKPFNLGELVSRIKALLRRARK 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   E+  I V          G+   L   E+R+L   + N G  +++  I   ++  
Sbjct: 124 LRSPILESHGIAVDLMKGSATKNGQSLELTAAEQRLLIMFLQNPGMILSRNSILERLWDS 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL---GYSIDW 222
             + V++N +  +I +LR K+ +    DP    R L   G    W
Sbjct: 184 PSDFVDDNTLSVYIRRLRSKIED----DPNHPARLLTVRGMGYKW 224


>gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 247

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 12/147 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR  V  N A
Sbjct: 75  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR--VDKNGA 132

Query: 127 ETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              P         IR+ ++ R      E   L   E  +LE L++  G+  ++++I   +
Sbjct: 133 SGIPSSGVIHVTNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEV 192

Query: 178 YGLFDE-AVEENVVESHISKLRKKLRN 203
           +G   E  V+  VV+ HIS+LR KL +
Sbjct: 193 WGYTPERHVDTRVVDVHISRLRAKLED 219


>gi|260777352|ref|ZP_05886246.1| two-component response regulator CreB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607018|gb|EEX33292.1| two-component response regulator CreB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 229

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           V+I+D   + D  I +   DG     F++  E   +++ S    +        G G    
Sbjct: 8   VIIEDEPAIADNLIHVLEMDGYQPAWFSTAGEGLTFMKQSEPALLVLDVGLPDGNG---F 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP+I ++        +   + G DD V KP   RE+LAR+    +    
Sbjct: 65  ELCKTIREFSDVPIIFLTARNDEIDRVVGLEIGADDYVTKPFSPREMLARIKLRIKSRPT 124

Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   A    I   + +D  D  V G+   L   E +IL  L+A     +++ Q+  A   
Sbjct: 125 TIQSANEQAIEDDLKADNFDYSVDGQPLGLTAVEFKILNRLIAVSSSVLSREQLMLAA-D 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   A  E  ++SHI  +R KL+     D + +KR  GY  D
Sbjct: 184 MTPHASYERNIDSHIKAIRNKLKPFSMADRICTKRGFGYYFD 225


>gi|239918315|ref|YP_002957873.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415488|ref|ZP_06247230.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839522|gb|ACS31319.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 239

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +RA S+  ++ ++        L+    G DD + KP   RE++ARV A+ RR +
Sbjct: 75  IEVCRRVRAFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPR 134

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + +  E  P RV  D        +  V G+V  L R E  +L  L     +  ++ Q+ 
Sbjct: 135 TTVSAPE--PERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLI 192

Query: 175 SAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDP---VDSKRFLGYSI 220
             ++   D A   +E +V+ HI    K LR KL  +P   +D+ R +GY +
Sbjct: 193 DIVW---DPAWVGDERLVDVHI----KNLRRKLDANPARYIDTVRGVGYRM 236


>gi|256397300|ref|YP_003118864.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256363526|gb|ACU77023.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 249

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 18/167 (10%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           DV  +E  ++ +  +VL   R +R   Q P+I ++    +   L   D+G+DD V +P  
Sbjct: 44  DVVLLECGIVDR--EVLAFCRRLRTELQAPIIAVTHRVDMGAWLRGHDNGIDDYVVQPFG 101

Query: 105 HREILARVAAIYRRLKVSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRER 154
            +E+ AR+     RL V+  R             GP+ V  D R   V G+   L  +E 
Sbjct: 102 LQELAARL-----RLAVAPPRPPLTPGPPRRIVAGPLVVAEDSRTVTVHGQRVALRPKEY 156

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++L  L    G  +A+ Q+ S ++    +  E + +E HI+ LR KL
Sbjct: 157 QLLVVLARQAGTVLARDQLISRLWPAGWDGAERS-LEVHIASLRSKL 202


>gi|261342626|ref|ZP_05970484.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315274|gb|EFC54212.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
          Length = 220

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      ++G +L+   +    + L  S    +  ++  L  K    L
Sbjct: 3   LLIVEDDLLLQEGLALALANEGYALDCAATAAEADALIQSGEYSLVILDLGLPDKDGATL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R   + P++ ++   +++  ++  DSG DD + KP    E+ ARV A+ RR + 
Sbjct: 63  -LSQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N    G I +    +    Q +   +  +E  +L  L+   G+ V +  +   IY  
Sbjct: 122 HSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYSW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+    KLG D + + R +GY ++
Sbjct: 182 QDDP-GSNTLEVHIHNLRR----KLGKDRIKTVRGVGYRLE 217


>gi|196228091|ref|ZP_03126958.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227494|gb|EDY21997.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 226

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 7/159 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+  A +QVP++ +S        +     G DD + KP    E+LAR+ A  RR+   +N
Sbjct: 65  RVRAADAQVPVLFLSAKSEEIDVVVGLQLGADDFIRKPFGKHELLARIRAALRRVHARSN 124

Query: 125 RAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +  +    V+      E  G    L  RE  ILE L    G+ V +  + +  +G+ 
Sbjct: 125 GVRSFAMHDLVVYPRELRAERAGATIDLSPREAGILELLHEKTGQVVDRDTLLNRCWGM- 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
           D   E   ++ HI+KLRK++    G +P  +++ R +GY
Sbjct: 184 DYFPESRTLDQHIAKLRKRIEPDPG-NPTIIETVRGVGY 221


>gi|239918670|ref|YP_002958228.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415113|ref|ZP_06246855.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839877|gb|ACS31674.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 254

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 17/208 (8%)

Query: 3   VLIDDRALVKD----GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-G 57
           +++DD  ++ D    G+     +  V+ +G  ++E    L ++ R D++ ++  L    G
Sbjct: 34  LVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVE----LGTAGRPDLAILDVMLPDMDG 89

Query: 58  EKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
             VLE    +RAH S++P + ++   + +  +    +G DD V KP    E+L R   + 
Sbjct: 90  LDVLER---LRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLV 146

Query: 117 RRLKVSNNRAETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +R  V +  +E   +  +  + R  EV   G+   L   +  +L++LMAN    ++K +I
Sbjct: 147 QRSGVVSGGSEVLVVGDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERI 206

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G +D     N+VE +IS LRKK+
Sbjct: 207 LQDVWG-YDFGGRANIVELYISYLRKKI 233


>gi|168179997|ref|ZP_02614661.1| cell cycle transcriptional regulator CtrA [Clostridium botulinum
           NCTC 2916]
 gi|182668954|gb|EDT80930.1| cell cycle transcriptional regulator CtrA [Clostridium botulinum
           NCTC 2916]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+   +R+ S + P+I I+    ++      D+G DD + KP    E+ AR+ AI RR 
Sbjct: 60  IEILNYLRSESIETPVIIITARDEVEQLAFGLDNGADDYITKPFKLLELRARIHAIIRRF 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +N     G +++    R  E++ +   L  +E  ILEY+       V+  +I   IY
Sbjct: 120 HGRTNPIINIGKLQLNPITRTVEIENKPVALVSKEFDILEYICYRHPAVVSSEEIAEHIY 179

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              DE  +   +V+  HI++L+KKL N  G + + + R  GY
Sbjct: 180 ---DENFDPFSSVLRVHIARLKKKLSNASGKEILINIRGKGY 218


>gi|157736695|ref|YP_001489378.1| two-component response regulator [Arcobacter butzleri RM4018]
 gi|157698549|gb|ABV66709.1| two-component response regulator [Arcobacter butzleri RM4018]
          Length = 225

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 99/217 (45%), Gaps = 19/217 (8%)

Query: 8   RALVKDGYIALF---GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           + L ++ YI  F   GD+G+ L   N+             D+  ++  L  K    +E+ 
Sbjct: 21  KGLEEECYIVDFSTNGDEGLYLASINTY------------DLILLDIMLPVKNG--IEVC 66

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           + +R+ + Q P+I ++   S++  +   D G +D + KP    E+LAR+    R    + 
Sbjct: 67  KSLRSSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQLRITTTTQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            +     + +    +      +   L  +E  +LEYL+ N+ + +++T I  A+   F++
Sbjct: 127 TKLSIADLELDLLNKTASRSNQNIVLTAKEFSLLEYLIKNKNRVLSETTINEALSS-FED 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   N+V  +I +LR K+        + + R +G+ I
Sbjct: 186 SNISNIVNVYIYRLRNKIDKNFENKLIKTVRGIGFKI 222


>gi|154499723|ref|ZP_02037761.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
           29799]
 gi|150271321|gb|EDM98578.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
           29799]
          Length = 227

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R+ S +P+I ++      + +   D G DD + KP    E+L+R+ A+ RR  +  ++A
Sbjct: 67  VRSSSTIPIIFLTASDQEISIVKGLDMGGDDYITKPFKLNELLSRIKALLRR-SLQFSKA 125

Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ET      IRV ++ R     GE   LP  E ++L   M N    + +  I   ++    
Sbjct: 126 ETILEANGIRVDTNERLVWKNGEPVDLPLVEYKLLCLFMKNPNHLMPREMILDRMWDGNG 185

Query: 183 EAVEENVVESHISKLRKKLRN 203
             V++N +  +I +LR K+ +
Sbjct: 186 NFVDDNTLSVYIRRLRNKIED 206


>gi|187476532|ref|YP_784556.1| two-component response regulator [Bordetella avium 197N]
 gi|115421118|emb|CAJ47602.1| probable two-component response regulator [Bordetella avium 197N]
          Length = 239

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAET 128
           +P+I ++     +  ++  ++G DD + KP+   E+LARVAA+ RR + +    N   + 
Sbjct: 78  LPIIFLTSRNQEEDLVEGLNAGADDYIVKPLRAAELLARVAALLRRTQATASLENPAFDL 137

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           GP  V    R  E+ GE  PL  +E  +    + N G+ +++  +  +++   +      
Sbjct: 138 GPYHVDPARRVIELHGEAIPLAPKEYELALLFLRNIGRLLSRDLLAESVWN-REIPPTSR 196

Query: 189 VVESHISKLRKK--LRNKLGFDPVDSKRFLGYSID 221
            +++H+S +R+K  LR + G   + S   LGY ++
Sbjct: 197 TLDTHLSNIRQKLQLRPENGLR-LTSSYALGYRLE 230


>gi|87310230|ref|ZP_01092361.1| DNA-binding response regulator [Blastopirellula marina DSM 3645]
 gi|87286979|gb|EAQ78882.1| DNA-binding response regulator [Blastopirellula marina DSM 3645]
          Length = 234

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 7/190 (3%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDS 93
           E+ L+ +  +   AI   L+  G   LE+ R +R      PL+ ++   S+   +   D 
Sbjct: 45  EKGLEYARTQQFDAILLDLMLPGIGGLEVVRTLRDEGIGTPLLILTALGSVDDRVQGLDH 104

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD + KP    E+LAR+ A++RR         E GP+ +    R      +   L   
Sbjct: 105 GADDYMVKPFAFPELLARLNAMWRRASPRPALNYEAGPLALDLGSRKVTRSSKEIDLSPS 164

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--V 210
           E  ILE LM + G+ V++  +   ++G  D     NV++ HI+ LR+K+    GFD   +
Sbjct: 165 EFSILELLMRHAGQIVSRKMLNEHLWGQ-DWNGMTNVIDVHINHLRQKVDR--GFDEPLI 221

Query: 211 DSKRFLGYSI 220
            + R  GY +
Sbjct: 222 HTVRGRGYVL 231


>gi|134292766|ref|YP_001116502.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135923|gb|ABO57037.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 221

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 6/154 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR     N   T
Sbjct: 69  AGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHANDVLT 128

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAVE 186
            G + +    R  E+ G+   L R+E  +LE ++A+R +R+ +K ++ + ++   +E   
Sbjct: 129 LGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKDELLNQLFSFGNEP-S 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N VE +++++R+KL        + + R +GY I
Sbjct: 187 ANAVEQYVTRVRRKLHGS--SVEIRTARGMGYQI 218


>gi|30264605|ref|NP_846982.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530074|ref|YP_021423.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187428|ref|YP_030680.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65321903|ref|ZP_00394862.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165871505|ref|ZP_02216152.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635564|ref|ZP_02393876.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641577|ref|ZP_02399824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688250|ref|ZP_02879460.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708682|ref|ZP_02899120.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653111|ref|ZP_02935398.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566979|ref|ZP_03019895.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227817319|ref|YP_002817328.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229602420|ref|YP_002868816.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686972|ref|ZP_05150830.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724536|ref|ZP_05186319.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736642|ref|ZP_05194348.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741680|ref|ZP_05199367.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754723|ref|ZP_05206758.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757555|ref|ZP_05209582.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259263|gb|AAP28468.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505222|gb|AAT33898.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181355|gb|AAT56731.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712802|gb|EDR18332.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510462|gb|EDR85861.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528984|gb|EDR91739.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126362|gb|EDS95251.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667756|gb|EDT18509.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081635|gb|EDT66706.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561970|gb|EDV15939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227007249|gb|ACP16992.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229266828|gb|ACQ48465.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 230

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G+   L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + I+   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLIWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|25010196|ref|NP_734591.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76786780|ref|YP_328847.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77409199|ref|ZP_00785910.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77414552|ref|ZP_00790696.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|23094547|emb|CAD45766.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561837|gb|ABA44421.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77159393|gb|EAO70560.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77172207|gb|EAO75365.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 223

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 104/210 (49%), Gaps = 13/210 (6%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L ++GY  +   +G   E  N L+ EE      +  ++ I   ++   + + EL     A
Sbjct: 21  LTQEGYQFITASNGQ--EALNCLDTEE-----VQLIITDIMMPMMDGYQLIQELRS---A 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128
              VP+I ++    ++     F  G DD + KP+  +E+  R+ A+ RR   V+ ++   
Sbjct: 71  AYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLRRANIVAQHQLII 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G   +  D    +   +    P++E R+L +L++   +   + ++  +I+G+ D  ++E 
Sbjct: 131 GNTCLNEDELSLKYFEQEIVFPQKEFRVLFHLLSYPNRIFTRLELLDSIWGM-DTDLDER 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VV++ I+K+R+K+ +   F  +++ R +GY
Sbjct: 190 VVDACINKIRRKVEHLPDF-KIETVRGVGY 218


>gi|331000912|ref|ZP_08324549.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Parasutterella excrementihominis YIT
           11859]
 gi|329569871|gb|EGG51628.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Parasutterella excrementihominis YIT
           11859]
          Length = 235

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 11/150 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           +R  S VP+I +S      T ++ F  G DD V+KP +  E++ R+ A+ RR K      
Sbjct: 71  LRKSSDVPVIILSAKDERPTVIEGFREGADDFVSKPFYIEELMERIRAVLRRGKTRSLVH 130

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G +R+    R   V+  +  L  RE R+L  L+ + G+ +   ++  A++G
Sbjct: 131 APQSQELICGALRLLPGPRQCYVKDALVKLTDREFRLLLELVKHPGEVMTHERLLRAVWG 190

Query: 180 LFDEAVEE-NVVESHISKLRKKLRNKLGFD 208
             DE++ E   +    +++R+KL  + G D
Sbjct: 191 --DESIGEVQYLRVTFARIRRKL-EQCGLD 217


>gi|313889348|ref|ZP_07822996.1| putative response regulator protein GraR [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122180|gb|EFR45271.1| putative response regulator protein GraR [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 221

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           IR H   P+I IS        +   + G DD + KP     + A++ A  RR  + +N+ 
Sbjct: 69  IRKHVTTPIIFISSSNDEMDAVMALNMGGDDYITKPFSLTILDAKITAFLRRANQFANDS 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +  DG   +   ++F  P  E +IL  L+ N+   V+K ++   ++   D+ +
Sbjct: 129 LSYKGYHLHFDGSLTKEDQKIFLSP-TEHKILSLLLTNQESVVSKEKLLRTLWE-SDQFI 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++N +  ++++LRKKL + + F+ + + R +GY
Sbjct: 187 DQNTLNVNMTRLRKKLSD-INFNYIHTVRGVGY 218


>gi|289663657|ref|ZP_06485238.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 238

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 31/195 (15%)

Query: 51  AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           A L G+G +++            E+ R IR  S VP+I ++        +   D+G +D 
Sbjct: 48  ALLAGQGAELVVLDIGLPDRDGHEVLREIRQWSSVPVIMLTVRAGETEKVAALDAGANDY 107

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150
           V KP   +E++AR+ ++ R+    +   E+    VF DG        R+  + GE  PL 
Sbjct: 108 VTKPFGVQELMARIRSLLRQAGAGSTVEES----VFDDGCLHIHLGLREVTLNGEAVPLS 163

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG---- 206
           R+E  +L  L+ + G+ V + Q+   ++G   E  + + +   + KLR+KL++       
Sbjct: 164 RKEYALLALLLKHAGRVVTQPQLLREVWGPTHED-DTHYLRILVGKLRQKLQDDAAAPHY 222

Query: 207 --FDPVDSKRFLGYS 219
              +P    RF+G +
Sbjct: 223 IVTEPGVGLRFIGVT 237


>gi|84625277|ref|YP_452649.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84369217|dbj|BAE70375.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 238

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 31/195 (15%)

Query: 51  AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           A L G+G +++            E+ R IR  S VP+I ++        +   D+G +D 
Sbjct: 48  ALLAGQGAELVVLDIGLPDRDGHEMLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDY 107

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150
           V KP   +E++AR+  + R+    +   E+    VF DG        R+  + GE  PL 
Sbjct: 108 VTKPFGVQELMARIRVLLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLNGEAVPLS 163

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG---- 206
           R+E  +L  L+ + G+ V + Q+   ++G   E  + + +   + KLR+KL++       
Sbjct: 164 RKEYALLALLLKHAGRVVTQPQLLRELWGPTHEE-DTHYLRILVGKLRQKLQDDAAAPHY 222

Query: 207 --FDPVDSKRFLGYS 219
              +P    RF+G +
Sbjct: 223 IVTEPGVGLRFIGVT 237


>gi|300697453|ref|YP_003748114.1| OmpR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074177|emb|CBJ53722.1| Transcriptional regulator of hrp gene cluster, OmpR family
           [Ralstonia solanacearum CFBP2957]
          Length = 245

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146
           F++GVDD++       E+ ARV  + RR +     A      GP R+    R   V    
Sbjct: 92  FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNDTP 151

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L  RE      L ++ G  +++ QI SA++G  D ++ E  +E HI KLRKKL
Sbjct: 152 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 205


>gi|237749392|ref|ZP_04579872.1| two component transcriptional regulator [Oxalobacter formigenes
           OXCC13]
 gi|229380754|gb|EEO30845.1| two component transcriptional regulator [Oxalobacter formigenes
           OXCC13]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 11/141 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I +S   S    +   D+G DD + KP    E+LARV A  RR + S N  
Sbjct: 70  LRNWSDIPVIVLSARNSEHDKISALDAGADDYLEKPFGAGELLARVRAQLRRQQRSGN-- 127

Query: 127 ETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              P   F+D   DP     E  GE   L   E RIL +L +   + V   Q+  A++G 
Sbjct: 128 --DPTIRFADVCIDPVRRLVEKNGEPVHLTPIEYRILTFLASQPDRVVTHQQLLKAVWGP 185

Query: 181 FDEAVEENVVESHISKLRKKL 201
                + + +  H++ LRKK+
Sbjct: 186 -GHTEDMHYIRVHMANLRKKV 205


>gi|229081791|ref|ZP_04214283.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock4-2]
 gi|228701379|gb|EEL53873.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock4-2]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G++  L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATETIEKMIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|222098001|ref|YP_002532058.1| response regulator [Bacillus cereus Q1]
 gi|228960804|ref|ZP_04122441.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229147097|ref|ZP_04275456.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST24]
 gi|229186790|ref|ZP_04313946.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BGSC 6E1]
 gi|229198686|ref|ZP_04325386.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1293]
 gi|221242059|gb|ACM14769.1| response regulator [Bacillus cereus Q1]
 gi|228584795|gb|EEK42913.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1293]
 gi|228596683|gb|EEK54347.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BGSC 6E1]
 gi|228636346|gb|EEK92817.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST24]
 gi|228798889|gb|EEM45866.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G+   L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + I+   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLIWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|270308699|ref|YP_003330757.1| DNA-binding response regulator [Dehalococcoides sp. VS]
 gi|270154591|gb|ACZ62429.1| DNA-binding response regulator [Dehalococcoides sp. VS]
          Length = 209

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+   IR  S VP+I ++     Q  +   ++G +D + KP    E+LARV A  R   
Sbjct: 45  LEVLEGIRLFSDVPVIILTVRSDEQDIVCSLETGANDYITKPFKQMELLARVKACLRGNT 104

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
            + N  + GP  +    R     G+   L   E  +L+ L+ + GK V+ +++  AI+  
Sbjct: 105 SNRNIFKQGPFELNIIMRKVFYNGKWIALTPSETIVLQCLLRSIGKTVSYSELSHAIWKD 164

Query: 180 LFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
            +D A  ++ ++ +I  +R+KL   NK   + + +   +GY+++
Sbjct: 165 EYDGA--KSTIKVYIKHIREKLEVCNKNTEELISAVVGVGYTLN 206


>gi|113868143|ref|YP_726632.1| response regulator [Ralstonia eutropha H16]
 gi|113526919|emb|CAJ93264.1| response regulator involved in heavy metal response, OmpR-family
           [Ralstonia eutropha H16]
          Length = 227

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 15/196 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L ++GY+     +GV           + L  +  E   AI   ++      + + + +
Sbjct: 18  RGLSENGYVVDTAHNGV-----------DGLHLACTEPYDAIVLDVMLPALDGVSVLKSL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRA 126
           R   Q P++ ++    L   L+ FD+G DD ++KP    E+LAR+  + RR + +  ++ 
Sbjct: 67  RREQQTPVLMLTARDDLDDRLNAFDAGADDYLSKPFSFLELLARLNVLTRRGRQTEPSQL 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             G +R+    R          L  RE  +L  L   + + V+KT I   ++ + FD   
Sbjct: 127 TVGDLRIDLLSRRATRGTRRLELSAREFTLLSVLARRQAQIVSKTAITELVWDISFD--C 184

Query: 186 EENVVESHISKLRKKL 201
             NVVE  + +LR KL
Sbjct: 185 NTNVVEVAVKRLRAKL 200


>gi|49481473|ref|YP_038587.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228929584|ref|ZP_04092602.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228935846|ref|ZP_04098658.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228948260|ref|ZP_04110543.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124101|ref|ZP_04253293.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           95/8201]
 gi|49333029|gb|AAT63675.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228659403|gb|EEL15051.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           95/8201]
 gi|228811247|gb|EEM57585.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823903|gb|EEM69723.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829971|gb|EEM75590.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 18/203 (8%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           ++ LVK+G+      DG   EG N+     +L+ S   D+  ++  +       LE+ RI
Sbjct: 19  EKYLVKEGFQVTIASDGE--EGVNT-----YLKGSF--DLIILDIMM--PKLDGLEVVRI 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNR 125
           IR  S VP++ +S   +          G DD + KP    E+ ARV A I R  K S   
Sbjct: 68  IREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKYSATE 127

Query: 126 AETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                I++     DP     E  G+   L  +E  IL+  + N+ +   K QI++ I+  
Sbjct: 128 TTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTLIWN- 186

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
            +   ++NV+  H+ +LR+K+ +
Sbjct: 187 EEYYGDDNVINVHMRRLREKIES 209


>gi|330944587|gb|EGH46541.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330954542|gb|EGH54802.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 222

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 24/227 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++     +  + +   A E    I   L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLA--DGRDAVHQGASEPYDLIVLDLGLPGMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ +  R+     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+ +    + G   V  DG D ++    F       R+L Y M + G+ ++K+
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEF-------RLLRYFMLHPGQILSKS 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   +Y   +E  + NV+E H++ LR+    KLG   V+++R  GY
Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215


>gi|315646972|ref|ZP_07900086.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277624|gb|EFU40949.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 224

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K+ S    
Sbjct: 69  RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQTV 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G I +           E   LP +E  +L  L    G+   + Q+   I+G+ D A +
Sbjct: 129 HFGNIILDRQTYKVTRGTESLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWGI-DYAGD 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  V+ HI +LR++      F  +++ R LGY ++
Sbjct: 188 DRTVDVHIKRLRERFAETPDFR-IETVRGLGYRLE 221


>gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 8/174 (4%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           E  L+ + +ED + I   ++   E   ++ R +RA   VP+I +S        +     G
Sbjct: 35  ESGLKRALQEDFALILLDVMLPKEDGFQVCRNLRASKNVPIILVSAKREDMDKIRGLGLG 94

Query: 95  VDDVVNKPIHHREILARVA---AIYRRL----KVSNNRAETGPIRVFSDGRDPEVQGEVF 147
            +D + KP +  E++ARV    A Y RL    +   N  +   + +  +  +  + GE  
Sbjct: 95  ANDYIVKPFNPSELIARVKSQIANYERLTQGAQKKENLLQIENLMIDLNSHEVFLDGESL 154

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            LP +E  +L +L  N     +K Q+F  I+GL D   E + V  HI+++R+K+
Sbjct: 155 VLPNKEFELLVFLAKNPNIVFSKDQLFEKIWGL-DAIGEISTVTVHINRIREKI 207


>gi|296157300|ref|ZP_06840136.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892636|gb|EFG72418.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 260

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSNMPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR   V  +V  L  RE  +LE L+   G+ V+K Q
Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+    G   + + R LGY ++
Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 219


>gi|289679223|ref|ZP_06500113.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 222

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 24/227 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++     +  + +   A E    I   L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLA--DGRDAVHQGASEPYDLIVLDLGLPGMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ +  R+     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQHWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+ +    + G   V  DG D ++    F       R+L Y M + G+ ++K+
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEF-------RLLRYFMLHPGQILSKS 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   +Y   +E  + NV+E H++ LR+    KLG   V+++R  GY
Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215


>gi|284051845|ref|ZP_06382055.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291567764|dbj|BAI90036.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 253

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I ++    +   +   + G DD + KP   +E+ AR+ AI RR K + +  
Sbjct: 79  IREISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRRFKDNASSH 138

Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  P       +R+ +  R      ++ PL   E  +LE L    G+ V++++I   ++G
Sbjct: 139 DLSPEVIQVDTLRIDTIKRRVYKGDKLLPLTYIEFNLLELLFKRSGEAVSRSEILQQLWG 198

Query: 180 LFDEAVEE-NVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
                + +  VV+ H+++LR K+  ++   + + + R +GYS
Sbjct: 199 YTPRRIADMRVVDVHVARLRAKIETDQRNPEYILTVRGIGYS 240


>gi|229192651|ref|ZP_04319610.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228590741|gb|EEK48601.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 235

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V++ ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVSREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|226311053|ref|YP_002770947.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094001|dbj|BAH42443.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 240

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 24/157 (15%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S+VP + +S        +     G DD V KP +  E+++RV A++RR+ V
Sbjct: 72  ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDV 131

Query: 122 -SNNRAETGPI-------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            S    +   I             +++ +G+  EV    F       +IL  LM + G+ 
Sbjct: 132 FSKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEF-------KILSLLMKHAGRV 184

Query: 168 VAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKLRN 203
             K  I+  ++G   E + +EN++  +ISKLR+K+ +
Sbjct: 185 FTKASIYEHVWG--QEYIGDENLIMVYISKLREKIED 219


>gi|154509392|ref|ZP_02045034.1| hypothetical protein ACTODO_01923 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799026|gb|EDN81446.1| hypothetical protein ACTODO_01923 [Actinomyces odontolyticus ATCC
           17982]
          Length = 219

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 94/189 (49%), Gaps = 23/189 (12%)

Query: 48  AIEAFLIGKGEKVL---ELPRI--------IRAHS-QVPLIGISDYPSLQTTLDFFDSGV 95
           A+EA L G+G  +L    LP I        IR     +P+I ++   S+   +   + G 
Sbjct: 37  AVEAALQGRGALMLLDVGLPDIDGFEVLEQIRGQGVGMPVIMLTARSSVADRVAGLEGGA 96

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRR 152
           DD V KP    E+LARV    R  + S + A T   G + +    R   V  E   L  R
Sbjct: 97  DDYVPKPFSFEELLARVRLRLRE-ETSTSSAMTLTRGSLVLDLKTRRARVGAEWVDLSAR 155

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           E  +LE  M N G+ +++ Q+ SA++G+ FD A   NVV+ ++S LR+    K+G D  +
Sbjct: 156 EFTLLETFMRNPGQVLSREQLLSAVWGIDFDGA--SNVVDVYLSYLRQ----KIGKDYFE 209

Query: 212 SKRFLGYSI 220
           + R +GY +
Sbjct: 210 TVRGMGYRL 218


>gi|154495976|ref|ZP_02034672.1| hypothetical protein BACCAP_00259 [Bacteroides capillosus ATCC
           29799]
 gi|150274859|gb|EDN01915.1| hypothetical protein BACCAP_00259 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 7/151 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGP 130
           VP+I ++   +    ++  ++G DD V KP    E+ ARV A+ RR +    N     G 
Sbjct: 78  VPVILLTARTAEMDRVNGLEAGADDYVVKPFGIMELQARVKAVLRRTRREEDNRLIRCGD 137

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    R     GE   L  +E  +L  L  +RG  + + +I  +++  +D   E   V
Sbjct: 138 LEIDPAARVVRRGGEQVDLTFKEFELLRLLATHRGVALTRDEILQSVWD-YDYTGETRTV 196

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + H+    K LR KLG + + + R +GY ++
Sbjct: 197 DMHV----KTLRQKLGEEYITTVRGVGYKMN 223


>gi|30022615|ref|NP_834246.1| two-component response regulator ycbL [Bacillus cereus ATCC 14579]
 gi|229112000|ref|ZP_04241543.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-15]
 gi|229129822|ref|ZP_04258788.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-Cer4]
 gi|296505012|ref|YP_003666712.1| two-component response regulator ycbL [Bacillus thuringiensis
           BMB171]
 gi|29898173|gb|AAP11447.1| Two-component response regulator ycbL [Bacillus cereus ATCC 14579]
 gi|228653513|gb|EEL09385.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-Cer4]
 gi|228671323|gb|EEL26624.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-15]
 gi|296326064|gb|ADH08992.1| two-component response regulator ycbL [Bacillus thuringiensis
           BMB171]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G+   L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATETTEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|330981352|gb|EGH79455.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 222

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 24/227 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++     +  + +   A E    I   L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLA--DGRDAVHQGATEPYDLIVLDLGLPGMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ +  R+     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+ +    + G   V  DG D ++    F       R+L Y M + G+ ++K+
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEF-------RLLRYFMLHPGQILSKS 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   +Y   +E  + NV+E H++ LR+    KLG   V+++R  GY
Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215


>gi|324328343|gb|ADY23603.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 235

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|299132540|ref|ZP_07025735.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298592677|gb|EFI52877.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 218

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 8/167 (4%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           KG +VL   R  + ++Q+P+I ++    +   +   D G  D +  P   RE+LAR+ AI
Sbjct: 57  KGTEVLREFR--KLNAQLPVIVVTTRDGVDDRIHALDLGAADCLVMPFDIRELLARMRAI 114

Query: 116 YRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            R     N    T G I +     +    G    L  RE  +L+ LM   G  +++T + 
Sbjct: 115 LRHKGNGNPLILTNGLISLNPATHEVVHNGARVYLTARESALLQALMLRPGAILSRTDLE 174

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             IYG ++E +  N VE  I  +R+    KLG   + + R LG+ +D
Sbjct: 175 RHIYG-WNERIASNAVEFLIHAIRR----KLGTSSIRNVRGLGWMVD 216


>gi|283833495|ref|ZP_06353236.1| DNA-binding response regulator PhoP [Citrobacter youngae ATCC
           29220]
 gi|291071158|gb|EFE09267.1| DNA-binding response regulator PhoP [Citrobacter youngae ATCC
           29220]
          Length = 206

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
           +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ RR   +++      P 
Sbjct: 73  LPILVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALMRRNSGLASQIISLPPF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y    E  E + ++
Sbjct: 133 QVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191

Query: 192 SHISKLRKK 200
             + +LRKK
Sbjct: 192 VLMGRLRKK 200


>gi|322419045|ref|YP_004198268.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125432|gb|ADW12992.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 227

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRII 67
           L ++GY  +   DG   LE  N L+           D+  ++  L G  G  V +  R  
Sbjct: 21  LQQEGYKTVISHDGAEGLEAANRLQ----------PDLILLDLMLPGMLGTDVCKSIRKS 70

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
              S +P++ ++        +  F+ G DD V KP   RE++ R+ AI RR   +N+ AE
Sbjct: 71  EKTSHIPVMMLTARGEEIDKVVGFEVGADDYVVKPFSTRELMLRIKAILRRNANANSPAE 130

Query: 128 TGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +  I V     D E     V G+       E ++L  L+   G+  ++  +   ++G ++
Sbjct: 131 SAIINVGCISIDTERHLVTVDGKEVSFTTTEFKLLYTLVMRFGRVQSRDVLLRDVWG-YN 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +   V++H+++LR K+      D + + R  GY ++
Sbjct: 190 FVEDTRTVDTHVTRLRTKMGE--AGDMIKTVRGFGYKLE 226


>gi|242242016|ref|ZP_04796461.1| response regulator [Staphylococcus epidermidis W23144]
 gi|242234525|gb|EES36837.1| response regulator [Staphylococcus epidermidis W23144]
 gi|319401273|gb|EFV89485.1| response regulator [Staphylococcus epidermidis FRI909]
          Length = 224

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 21/204 (10%)

Query: 16  IALFGDDGVSLEGFNSLEFEEW-LQSSAREDVS-AIEAFLIGKGEKVL---ELP------ 64
           I L  DD    +     E E+W    +  ED S  +E F     E V+   +LP      
Sbjct: 3   ILLVEDDNTLFQELKK-ELEQWDFNVAGVEDFSHVMETFETFNPEIVILDVQLPKYDGFY 61

Query: 65  --RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
             R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+   
Sbjct: 62  WCRKMRQQSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEF 121

Query: 121 -VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V   R  +         +D  +   +   L + E  ILE L+  R + V +  + +A++
Sbjct: 122 GVEEKRTLSWQDATVDLSKDSIQKDDKTIFLSKTEMIILEMLINKRNQIVTRDTLITALW 181

Query: 179 GLFDEA-VEENVVESHISKLRKKL 201
              DEA V +N +  ++++LRKKL
Sbjct: 182 D--DEAFVSDNTLTVNVNRLRKKL 203


>gi|229173256|ref|ZP_04300803.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228610226|gb|EEK67501.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 243

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 73  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 132

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   + ++ +    +++ +   + R E  +LE LM N  + V +  + + ++
Sbjct: 133 PKVEERMVEQQGLCLYPERLILKLRNQEIDITRNEAILLEMLMKNYPRVVGREVLLNKLW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     D +++ R +GY   I W+
Sbjct: 193 D-SESYVDDNTLSVNTTRVRKKLKTLQIEDAIETIRSVGYRLHITWD 238


>gi|257066704|ref|YP_003152960.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798584|gb|ACV29239.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 237

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 22/202 (10%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRII 67
           L+KDGY      DGV +LE FN    EE +      D+  ++  L +  GE+VL   + I
Sbjct: 23  LIKDGYHVFQAFDGVKALEIFN----EEQI------DLVILDLMLPMLSGEEVL---KDI 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRA 126
           R  SQVP+I  S        +     G DD V KP  ++E++ RV A+ RR++  N  RA
Sbjct: 70  RNKSQVPVIITSAKVEEFDRIQGLRLGADDYVTKPFSNKELVERVKAVLRRIEKYNIPRA 129

Query: 127 E---TGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +   T   R+  D +       G    L + E  I++ L ++  K   + +I    +GL 
Sbjct: 130 DIIKTNDGRLLMDLKYNRFLKDGREISLTKNEFSIVKTLFSSPNKIFTRDEIIELTFGL- 188

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D    +  +++HI  +R+K+ +
Sbjct: 189 DYDAYDRAIDTHIKNIRQKIED 210


>gi|254422271|ref|ZP_05035989.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189760|gb|EDX84724.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 12/209 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D    L    G S++  +  E    +  S + D+  ++  L       L
Sbjct: 3   ILLVDDEVELTDPLSHLLRRQGYSVDVASDGETGAQMAISGQYDLLILDRML--SKMSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+ +   P++ ++   +L   +D  D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  EICQKVRSQALSTPVLFLTAKDTLDDRVDGLDAGADDYLVKPFELRELLARVRALLRR-- 118

Query: 121 VSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +    +  I  F D +   E Q     G+   L  +E ++L YLM +  + +   QI+
Sbjct: 119 PGSPSVASPSILQFEDLKLQVENQLVSRNGKSIELSDKEVQLLAYLMRSPHQLLTHAQIY 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
            A++G    A   N + + +  LRKK+  
Sbjct: 179 DAVWG-EGSAPSSNTLAAQMRLLRKKIEQ 206


>gi|90961187|ref|YP_535103.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820381|gb|ABD99020.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 229

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 8/168 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  SQ+P++ +S        +     G DD V KP +  E++ARV ++ RR +
Sbjct: 61  MEVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAE 120

Query: 121 --VSNN---RAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             V NN   + E GP+ +  D  +   ++G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 HNVKNNELDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+ +   G   + +   +GY I+
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227


>gi|52141066|ref|YP_085763.1| response regulator [Bacillus cereus E33L]
 gi|51974535|gb|AAU16085.1| response regulator [Bacillus cereus E33L]
          Length = 235

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|21673488|ref|NP_661553.1| DNA-binding response regulator [Chlorobium tepidum TLS]
 gi|21646594|gb|AAM71895.1| DNA-binding response regulator [Chlorobium tepidum TLS]
          Length = 236

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 95/196 (48%), Gaps = 10/196 (5%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFF 91
           EE L    R  V+ +   ++  G    E+ R IR + Q   +P++ ++        +  F
Sbjct: 37  EEALDELQRHAVNLVLLDIMLPGIDGFEVCRRIRQNVQWSDLPIVMLTAKGEEIDKVFGF 96

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVF 147
           + G+DD V KP   RE+  R+ AI +R + + +  +    +G I +     +  + G   
Sbjct: 97  ELGIDDYVVKPFSPRELNLRIRAILKRDRRNRSNVQEVLRSGGIELDIGRHEATLDGRPL 156

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E ++L  LM  +G+   +  + S ++ + D+++    +++H+++LR+KL +   F
Sbjct: 157 VLTLMEFKLLALLMKRKGQAQTREVLLSDVWDV-DKSINTRTIDTHVTRLREKLGDAGRF 215

Query: 208 DPVDSKRFLGYSIDWN 223
             + + R LGY  D N
Sbjct: 216 --IRTVRGLGYKFDEN 229


>gi|331003642|ref|ZP_08327137.1| hypothetical protein HMPREF0491_01999 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412269|gb|EGG91662.1| hypothetical protein HMPREF0491_01999 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 225

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R     +P++ ++    +   ++  DSG D  + KP   RE+LA V A+ RR  
Sbjct: 61  QVARTLRKEKNGLPILMLTAKSDILDRVEGLDSGADYYLTKPFDRRELLACVNALLRRQG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N+   G   +  D  +  + GE    L  +E +++  L+      ++K      I+G
Sbjct: 121 KEVNQISYGNTTLDIDSGEL-ISGENSIRLSSKEFQMMRLLLKEGKNNISKNLFLEKIWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D    EN VE +I  LRKKL+       + + R LGY ++
Sbjct: 180 -YDSDATENNVEVYIGFLRKKLKTLSSDISIIASRGLGYHLE 220


>gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1]
          Length = 232

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 21/199 (10%)

Query: 28  GFNSLEFEE-----WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDY 81
           G+  LE  +     W       D   ++  L   G   L++ R +RA   Q+P++ ++  
Sbjct: 28  GYGVLEVADGRAGLWWAVEHAPDAVVLDLML--PGMDGLQVCRELRARRPQLPIVVLTAL 85

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI-----RVFSD 136
              +  +     G DD V KP   RE++ R+ ++ RR   +   A  GP+      V   
Sbjct: 86  GEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRR--SAPEAATVGPVVDGGLVVDRS 143

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
           G+   + G    L  RE  +L +L+A+ G+   +T++ + ++G   E  +++ V  H+  
Sbjct: 144 GQRAHLDGVPLALTGREFDLLAFLVAHPGRAFTRTELLAEVWGW--EYGDQSTVTVHV-- 199

Query: 197 LRKKLRNKLGFDPVDSKRF 215
             ++LR KL  DP   +R 
Sbjct: 200 --RRLREKLEIDPNRPRRI 216


>gi|307946640|ref|ZP_07661975.1| transcriptional activator protein Irlr [Roseibium sp. TrichSKD4]
 gi|307770304|gb|EFO29530.1| transcriptional activator protein Irlr [Roseibium sp. TrichSKD4]
          Length = 226

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 16/163 (9%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A    P++ ++    +   ++  ++G DD + KP    E+ ARV A+ RR   ++ + ET
Sbjct: 69  AKVATPVLFLTAMGDVDDRVEGLEAGGDDYLAKPFAFSELKARVGALGRRSSFASEQTET 128

Query: 129 GPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + V    +D E+          G+   L  +E  +LE L+ + G+   +  +   ++ 
Sbjct: 129 TKLNV----KDIELDLLRRKCTRAGQDVDLNGKEFALLEALIRSNGRIQTRNMLLEKVWN 184

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + FD     +VVE+HIS+LR K+    G   + + R  GY I+
Sbjct: 185 MNFDPTT--SVVETHISRLRGKIEKPFGDTVIRTVRGAGYVIE 225


>gi|304398321|ref|ZP_07380195.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304354187|gb|EFM18560.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 226

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 24/216 (11%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D  + L G  G+  +G  S EF   +      D+S I+              R +R +S+
Sbjct: 26  DAQLVLTGSAGI--QGALSGEFTAMILDIMLPDMSGIDVL------------RQVRQNSR 71

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           +P+I ++        +   + G DD + KP + RE++AR+ A+ RR +    + +     
Sbjct: 72  IPVIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFEEQVPQPDAREPL 131

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +    R  E QG  F L   E  +L+ L+    + V+K ++     G   EA +
Sbjct: 132 RWGELTLNPATRMSEWQGRAFDLTASEFNLLDLLLRAPDRVVSKDELSEKGLGRPREAYD 191

Query: 187 ENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220
            + V+ HIS +R+KL + L  D ++  + R +GY I
Sbjct: 192 RS-VDVHISNIRQKL-SALTADSINIETVRSIGYRI 225


>gi|296875808|ref|ZP_06899870.1| transcriptional regulatory protein CpxR [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433179|gb|EFH18964.1| transcriptional regulatory protein CpxR [Streptococcus
           parasanguinis ATCC 15912]
          Length = 229

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 18/210 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D   +++   +L  +D   L+ F+  E     Q  A  D+  ++  L GK G++V
Sbjct: 4   ILLIEDNNDIQEILYSLLSEDHEVLQAFSGTEGLRLFQQEAI-DLVLLDIMLPGKNGDQV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE    IR  SQVP+I ++          +  +G +D + KP +  E+ ARV    R   
Sbjct: 63  LE---EIRMQSQVPVIMMTALGDKHLISQYLLAGANDYIVKPFNLDEVAARVTVQLRNQP 119

Query: 121 VSNNRAETGPIRVFSD-GRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+      F +   +PE      + +   L ++E +I E L+ +  K   K +++
Sbjct: 120 TVVQEAQASQKLSFKNLVLNPETFELESEEQTLRLGKKEFQIFETLLVHPKKIFTKEELY 179

Query: 175 SAIYGLFDEAVE---ENVVESHISKLRKKL 201
            A++    E V    +N + + +S LRKK+
Sbjct: 180 EAVW----EEVYLPGDNTLNAQLSNLRKKI 205


>gi|229550945|ref|ZP_04439670.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315770|gb|EEN81743.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 258

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 3/152 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRA 126
           R    +P++ I+    + +    F+SG+DD + KPI+  E+L R+ A+ RR K++ +N  
Sbjct: 103 RTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRAKITADNLL 162

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + + ++    +V  +   +  RE +IL  L++      ++ ++ +  + L  +   
Sbjct: 163 IVGNLTLNNEAITAQVNHQTVDVTVREFQILYKLLSYPDHAFSRAELINEFWDLASDT-S 221

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              V+ +I+KLR+K +   GF  + +   LGY
Sbjct: 222 MRAVDVYITKLREKFKAADGF-TIKTIHGLGY 252


>gi|255280864|ref|ZP_05345419.1| subtilin biosynthesis regulatory protein SpaR [Bryantella
           formatexigens DSM 14469]
 gi|255268801|gb|EET62006.1| subtilin biosynthesis regulatory protein SpaR [Bryantella
           formatexigens DSM 14469]
          Length = 240

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR     P++ ++        +  F +G DD + KP    E+ ARVAA  RR  
Sbjct: 77  MEVCRRIRDFVPCPILFLTARIEESDRVQGFAAGGDDYILKPFSLAELEARVAAHLRRET 136

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N A       + +    R   V  E    P++E  I+E L AN G+   K +I+  +
Sbjct: 137 RRINGASVRFDKELSIDYSQRKVFVNKETLAFPKKEFAIIELLSANAGQVFDKERIYEKV 196

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G +D   + +VV  HI ++R +L
Sbjct: 197 WG-YDGEGDSSVVAEHIRRIRARL 219


>gi|161506258|ref|YP_001573369.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867605|gb|ABX24228.1| hypothetical protein SARI_04453 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 270

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +LI+D  L+ DG  A     G S++ F      +    SA  D   ++  L G  G  +
Sbjct: 54  ILLIEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 113

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R      Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 114 LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        +      L  +E  +LE LM N+G+ + +  I   +Y 
Sbjct: 172 GQASSELRHGQVTLNPGNLVATLADAPLALKPKEFALLELLMRNKGRVLPRKLIEEKLYN 231

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+    KLG + + +   +GY++
Sbjct: 232 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 267


>gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 252

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 18/188 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP---------RIIRAHSQVPLIGI 78
           +L +E W   +A   ++A+ A    + + V+    LP         R+      VP++ +
Sbjct: 44  ALRYEGWQVRTAGNGMAALSAARQFQPDAVVLDVMLPDLDGFAVLRRLREVAPTVPVLFL 103

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAET----GPIRV 133
           +   +++  +     G DD V KP    E++AR+ A+ RR   +   R E     G + +
Sbjct: 104 TARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGFAVTARQEAVLTVGDLSL 163

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D  +    G++  L   E  +L YLM N  + ++K QI   ++  +D   + NVVE +
Sbjct: 164 DEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQILDRVWN-YDFGGQANVVELY 222

Query: 194 ISKLRKKL 201
           IS LRKK+
Sbjct: 223 ISYLRKKI 230


>gi|315179960|gb|ADT86874.1| DNA-binding response regulator [Vibrio furnissii NCTC 11218]
          Length = 219

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 22/216 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           +L + G++     DG+  +       EEW       DV  ++  L  K + +  L  I  
Sbjct: 19  SLEQTGWVPELSQDGI--DALYRATSEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
            +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +  
Sbjct: 69  ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126

Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
             I   S D R  +V  +G+   L   E +++ Y M N  K +++T++   IY   FD  
Sbjct: 127 MQIGDLSLDTRSSKVMWRGQAINLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR- 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + N +E  I ++RKK+   +    + + R LGY +
Sbjct: 186 -DSNTIEVFIGRIRKKIAPNI----IKTVRGLGYQL 216


>gi|311696838|gb|ADP99711.1| two-component response regulator [marine bacterium HP15]
          Length = 233

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 29/178 (16%)

Query: 53  LIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   L + R IRA    VP++ ++   +    +   + G DD + KP    E+ AR
Sbjct: 54  LMLPGLDGLAVCREIRACPGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELAAR 113

Query: 112 VAAIYRRLKVSNNRAETG--------------PI--RVFSDGRDPEVQGEVFPLPRRERR 155
           + A++RR+   +  A  G              P+  RVF D R+ +       L  RE  
Sbjct: 114 IKALFRRVDALSQAAPAGDQADEIEVDGLRIDPVRRRVFVDDREVD-------LTAREFD 166

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +L +  ++RG+  ++ Q+  +++G   E   E+ V +HI+    +LRNK+  DP D +
Sbjct: 167 LLWHFASHRGRVFSRAQLLDSVWGYNHEGY-EHTVNTHIN----RLRNKIEADPADPR 219


>gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 233

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 100/210 (47%), Gaps = 15/210 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++   + + EE +  + +++   +   ++       E
Sbjct: 5   LVVDDEKLIVKGMRFSLEQDGMEVDC--AYDGEEAINLAKQKEYDVVLLDVMLPKYDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S++P+I ++   +    +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQAIREFSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNSKK 122

Query: 123 NNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           N R           G +++  D R   +  +   L  +E  +LE L  N GK  ++ Q+ 
Sbjct: 123 NKRDSQDDSQVVIAGDLKLDRDSRRVFIAEKEINLTAKEFDLLELLTCNPGKVYSREQLL 182

Query: 175 SAIYGLFDEAVEEN---VVESHISKLRKKL 201
           + ++G  ++A++      V+ H+ +LR+K+
Sbjct: 183 TYVWG--NKAMDTGDVRTVDVHVRRLREKI 210


>gi|295133762|ref|YP_003584438.1| two component transcriptional regulator winged helix family protein
           [Zunongwangia profunda SM-A87]
 gi|294981777|gb|ADF52242.1| two component transcriptional regulator, winged helix family
           protein [Zunongwangia profunda SM-A87]
          Length = 222

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 15/215 (6%)

Query: 18  LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGK-----------GEKVLELP 64
           L  +D   + GF    LE E +    A      +E  L GK           G   +E+ 
Sbjct: 4   LIVEDETGISGFLKQGLEEESFAVDIADNGKKGLELALTGKYDLLLLDWMLPGLSGIEIC 63

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R  R    + P++ ++   ++  T+    SG +D + KP H  E+L R+    R     +
Sbjct: 64  RQFRKEDKETPVLFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIKVQLRPKSGEH 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                GPI + +        G+   L  +E  +LEYL+ N+ +   +T+I   ++ + + 
Sbjct: 124 AIFSLGPIELNTGTHQAFKNGKEVNLTLKEFALLEYLIRNKERVCTRTKIIEKVWDI-NF 182

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +    V++ +I+ LR+KL      + + + R +GY
Sbjct: 183 SYNTGVIDVYINALRRKLDLDQDENYIQTVRGVGY 217


>gi|228910361|ref|ZP_04074177.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 200]
 gi|228849313|gb|EEM94151.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 200]
          Length = 241

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E++ARV A I R  
Sbjct: 73  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELVARVKAGIRRST 132

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G    L  +E  IL+  + N+ +   K QI+
Sbjct: 133 KYSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIY 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 193 TLVWNE-EYYGDDNVINVHMRRLREKIES 220


>gi|226305622|ref|YP_002765582.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229489559|ref|ZP_04383422.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226184739|dbj|BAH32843.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229323656|gb|EEN89414.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 226

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 7/145 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R IRAH     + +    +    +DF    D+G DD V+KP    E++ARV A+ R
Sbjct: 61  LEVCRQIRAHRTS--LAVLMLTARTDEVDFVVGLDAGADDYVSKPFRLAELMARVRALLR 118

Query: 118 RLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R     +   E G IR+    R   V G    L  +E  +L  L+ + G+ V++  I   
Sbjct: 119 RHGGREDTIVEVGGIRLEPAARRVLVNGSEIALANKEYELLRVLLEHAGEVVSRDTILRE 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G   E      ++ H+S LR+K+
Sbjct: 179 VWGDV-ELRGSKTLDMHMSWLRRKI 202


>gi|188578300|ref|YP_001915229.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188522752|gb|ACD60697.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR +  ++   + G  
Sbjct: 70  TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGKASEVVQIGGF 129

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              +      + G    LP RE R+ + L+   G+ V K +I + ++G FD+    N +E
Sbjct: 130 VFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG-FDDDAGPNAIE 188

Query: 192 SHISKLRKKL 201
            ++ +LR+KL
Sbjct: 189 LYVGRLRRKL 198


>gi|204930785|ref|ZP_03221658.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320244|gb|EDZ05448.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 226

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 18  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 67  RTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 127 INGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + R +GY +
Sbjct: 185 TNTVDVAIRRLRAKVDDPFENKLIMTVRGMGYRL 218


>gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
 gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
          Length = 232

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP   RE++ARV A+ RR    N  +++   G I V  +       GE   L 
Sbjct: 99  GADDYITKPFSVREMVARVKAVLRRRTTINIESKSYILGNIVVDFEKHSLTKAGEKIELT 158

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +E  +LE L+ N+GK + +  +   I+G ++   E   V+ HI  LRKK+ +
Sbjct: 159 LKEFELLEVLIKNKGKVMTRDFLLDRIWG-YEYIGETRTVDVHIRHLRKKIED 210


>gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 3502]
 gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Clostridium botulinum H04402 065]
          Length = 232

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP   RE++ARV A+ RR    N  +++   G I V  +       GE   L 
Sbjct: 99  GADDYITKPFSVREMVARVKAVLRRRTTINIESKSYILGNIVVDFEKHSLTKAGEKIELT 158

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +E  +LE L+ N+GK + +  +   I+G ++   E   V+ HI  LRKK+ +
Sbjct: 159 LKEFELLEVLIKNKGKVMTRDFLLDRIWG-YEYIGETRTVDVHIRHLRKKIED 210


>gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905]
 gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 17/188 (9%)

Query: 48  AIEAFLIGKGEKV---LELPRI--------IRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95
           A+E F I + + +   L LP++        IR  S+ V ++ +S   ++   +   D G 
Sbjct: 36  ALELFEINEYDLIILDLNLPKMDGIEVLEQIRVQSEDVKILILSARSAIHDKIAGLDRGA 95

Query: 96  DDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
           +D + KP   +E+ AR+  + RR     +       I + S  +   V GE+ P+ ++E 
Sbjct: 96  NDYLIKPFDFQELDARIRNLLRRTFSQKSTIMSLEKITLDSSRKIVLVNGEIIPVTKKEY 155

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLG-FDPVDS 212
            ILEYLM  + K V+  ++   ++    EA +  N ++ HI  LRKK+ + LG  + + +
Sbjct: 156 AILEYLMLQQNKVVSSEELIEHVWD--SEADLFSNSLKFHIHSLRKKIADVLGEKEVIQT 213

Query: 213 KRFLGYSI 220
            R  GY I
Sbjct: 214 VRGQGYMI 221


>gi|126642907|ref|YP_001085891.1| OmpR family transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 199

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+
Sbjct: 32  LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 91

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179
                 +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I   
Sbjct: 92  RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 151

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            FD  V + V++SHI  LR+K+
Sbjct: 152 SFD--VADRVIDSHIKNLRRKI 171


>gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 222

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 17/157 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           +VP+I ++    ++  +   + G DD V KP    E+LARV A  R   +S  + E    
Sbjct: 73  KVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLRHQTLSPVKEE---- 128

Query: 132 RVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           RV + G        R  +V      L  +E ++LE LM +  + +++ Q+   ++G +D 
Sbjct: 129 RVLTAGDILLDLYTRQAQVADCPIKLSAKEFQLLETLMRHPEQVMSREQLLDRVWG-YDY 187

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               N+V+ ++  LRK    KLG + +++ R +GY +
Sbjct: 188 DPGSNIVDVYVGYLRK----KLGGNRIETVRGMGYRL 220


>gi|84622660|ref|YP_450032.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84366600|dbj|BAE67758.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 233

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR     NR +   + 
Sbjct: 73  TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRR-----NRGQASEVV 127

Query: 133 -----VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
                VF +      + G    LP RE R+ + L+   G+ V K +I + ++G FD+   
Sbjct: 128 QIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG-FDDDAG 186

Query: 187 ENVVESHISKLRKKL 201
            N +E ++ +LR+KL
Sbjct: 187 PNAIELYVGRLRRKL 201


>gi|308174713|ref|YP_003921418.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307607577|emb|CBI43948.1| two-component response regulator controlling resistance to
           antibiotics affecting the envelope [YtsB] [Bacillus
           amyloliquefaciens DSM 7]
 gi|328554642|gb|AEB25134.1| two-component response regulator controlling resistance to
           antibiotics affecting the envelope (YtsB) [Bacillus
           amyloliquefaciens TA208]
 gi|328913051|gb|AEB64647.1| two-component response regulator controlling resistance to
           antibiotics affecting the envelope [Bacillus
           amyloliquefaciens LL3]
          Length = 231

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 17/164 (10%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R+IR+ S VP++ +S  D+P+    +     G DD + KP H   ++A++ A++RR+   
Sbjct: 65  RMIRSQSNVPILFLSSRDHPA--DMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVYQY 122

Query: 123 NNRAETGPIRVFS----DGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N  AE   I+ +S    D     V  E     L + E  IL+ L   + K V++ ++  +
Sbjct: 123 N--AEPALIKRWSGAAIDAETNMVSHENGSVELTKNEMLILKLLAEQKNKIVSREELIRS 180

Query: 177 IYGLFDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           ++   DE  V +N +  ++++LRKKL ++LG    +++K   GY
Sbjct: 181 LWN--DERFVSDNTLTVNVNRLRKKL-DQLGIGKMIETKVGQGY 221


>gi|304436456|ref|ZP_07396430.1| two component response regulator IrlR [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370502|gb|EFM24153.1| two component response regulator IrlR [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 225

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDP 140
           S++  +   D+G DD + KP    E+LAR+ A+ RR   ++ +   E G  ++       
Sbjct: 83  SVEDRVKGLDAGADDYLVKPFEFSELLARLRALGRRSTQRIQHEVDEIGGFKLNRTANIL 142

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           E  G++  L  RE ++ + L  N G  V +  I   I+GL +  V  N ++S++  LRKK
Sbjct: 143 EKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRIWGL-EADVSSNNIDSYMKMLRKK 201

Query: 201 LRNKLGFDPVDSKRFLGYSID 221
           L        + + R +GY ++
Sbjct: 202 LDAAGEGASIKTIRGVGYKLE 222


>gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 231

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 4/161 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKV 121
           L RI    SQ P+I ++    ++  +   D G +D V KP    E+LAR+  A++   KV
Sbjct: 65  LKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALWFSQKV 124

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S  +     G + +    R+     +   L  RE  +L YL+ +  + + + QI  A++G
Sbjct: 125 SPKQVALSFGHLSINEQTREVVYFDKEIQLTPREYDLLFYLLKHPKQVLTREQILEAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + NVV+ +I  +R+KL        + + R +GY +
Sbjct: 185 -YDYYGDTNVVDVYIRYVRQKLEAANPTPLIQTIRGVGYVL 224


>gi|295091538|emb|CBK77645.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 232

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  V E  R  + ++Q+P+I ++        +   D G DD V KP    E+ +R+ A
Sbjct: 59  GTGFDVCEKVR--KQNTQIPIIFLTASDEEVNVIRGLDCGGDDYVTKPFKLGELCSRIRA 116

Query: 115 IYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + RR  VS+    N  + G I +        + G +  L   E R+L  L+ N  + V++
Sbjct: 117 LLRRAGVSSQDKTNILKCGDISIDLLASRVLLNGRILELTNAEYRLLCLLVRNANRVVSR 176

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             I + ++      V++N +  +I +LR+K+
Sbjct: 177 DIILNDLWDGTGNFVDDNTLSVYIRRLREKV 207


>gi|253996710|ref|YP_003048774.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983389|gb|ACT48247.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 228

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 4/139 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSN 123
           +RA    P+I  +     Q  +   ++G DD V KP     ++AR+ A+ RR     V  
Sbjct: 68  LRAKKLPPIIFFTGRSEEQDIVRVIEAGADDYVVKPASRPLLMARIHALLRRTSNQLVDK 127

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   +R  +  R   + GE   L  +E  +  Y + N G  +++  + + ++G   E
Sbjct: 128 TNYEFYALRFDTKLRVATLAGEAVRLTDKEFDLALYFLKNEGVLLSRVHLMNVVWGATSE 187

Query: 184 AVEENVVESHISKLRKKLR 202
            VE   V+ HIS LR KL+
Sbjct: 188 -VETRKVDVHISHLRTKLK 205


>gi|229152733|ref|ZP_04280917.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1550]
 gi|228630711|gb|EEK87356.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1550]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G+   L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + I+   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLIWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|218778176|ref|YP_002429494.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759560|gb|ACL02026.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 235

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGR-DPEVQGEVF 147
           F +G DD V+KP   +E++ RV A+ RR    +   +   G I +F + +       +  
Sbjct: 96  FSAGADDYVSKPFSLKELMVRVEAVLRRSGKNLGTAKVSIGGI-IFDEAQLKASYDDKTE 154

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L RRE  I+ YL    G+ V K ++   ++   D  VE   V+ H+ KLRKK+    G 
Sbjct: 155 ELTRREMDIVLYLHRQEGRIVPKRELLLEVWHYNDPDVETRTVDIHVLKLRKKITELAGE 214

Query: 208 D 208
           D
Sbjct: 215 D 215


>gi|118480165|ref|YP_897316.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118419390|gb|ABK87809.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 225

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQNETTFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-HNVVVNPNVVDLYIGYVRKKLKCEKKNRYIQTIHGRGYSM 223


>gi|28211540|ref|NP_782484.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203981|gb|AAO36421.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 235

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 19/213 (8%)

Query: 12  KDGYIALFGDDGVSLEGFNSL----EFEEWLQSSAREDVSAIEAF-------LIGKGEKV 60
           K+  I +  DD    E  N L     F  W  S+A   ++ +E         ++  G   
Sbjct: 6   KNAIILIVDDDEEIREIINILLSREGFVVWEASNANTAMAMLEKPVDLIILDIMMPGRNG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR  + VP++ +S         + F  G DD + KP    E+L R+ A+ RR  
Sbjct: 66  FELCTEIRKITTVPILFLSAKTQDIDKEEGFCCGGDDYLIKPFSQSELLLRIKALLRRFF 125

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V        ++N  + G + V  +     + G+   L   E +IL +L+ NR K ++  +
Sbjct: 126 VYQGVNNVSTDNTIKLGDLNVDFETGKVCINGDKVSLTGIEYQILSFLLHNRKKVLSARE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           I+  ++      +  N +  HI  LR+KL   L
Sbjct: 186 IYEHVWQEPFLPLSNNTIMVHIKNLRRKLEKDL 218


>gi|283835062|ref|ZP_06354803.1| DNA-binding response regulator CreB [Citrobacter youngae ATCC
           29220]
 gi|291069354|gb|EFE07463.1| DNA-binding response regulator CreB [Citrobacter youngae ATCC
           29220]
          Length = 229

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 16/226 (7%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE- 62
           L++D   + D  + +   +G S+E F     E  L    +      +A ++  G   +  
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFSVEAF-----ERGLPVLEKARQRCPDAIILDVGLPDISG 62

Query: 63  ---LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
                R++  H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+
Sbjct: 63  FELCRRLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFS 175
           +   + A T     F +  +   Q   F +P    R E  +L+ L+ + G+  ++ Q+  
Sbjct: 123 QKFASPASTTRCGDF-ELNELAAQITWFGIPLTLTRYEFLLLKTLLMSPGRIYSRQQLMD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 182 LVWADAQDTFDRT-VDTHIKTLRAKLRAINPEISPINTHRGMGYSL 226


>gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 232

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 234

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV------FSDGRDPEVQGE-V 146
           G DD + KP   RE++AR+ A+ RR +VS +  +T  + +       +D +   ++   V
Sbjct: 99  GADDYITKPFSPREVVARLKAVLRRSQVSTDTYKTDEMVISIQDLLINDSKKTVMKENIV 158

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKL 205
             L  RE  +L Y     G+ + +  I +A++G ++   E  +V+ HIS LR K+  N  
Sbjct: 159 LSLTPREYDLLLYFAQRLGRVIDRETILTAVWG-YEYTGESRMVDMHISNLRDKIESNPK 217

Query: 206 GFDPVDSKRFLGYSI 220
               + + R  GY++
Sbjct: 218 APKILKTVRGFGYTM 232


>gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 225

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R++ A ++   +P++ ++        +     G DD V KP   RE++ R+ A+ RR
Sbjct: 63  EICRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVLRR 122

Query: 119 LKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S      E   IR+  D    E  GE   L   E R+LE L+ + G    + Q+ + 
Sbjct: 123 GTRSGESPVLERHGIRLRPDAHTAEAHGEELQLTATEFRLLEDLLRHAGSVRTREQLLNK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G   E      V++H+ +LR KL +      +++ R +GY I
Sbjct: 183 VWGYSFEGY-ARTVDTHVRRLRAKLGHAASM--LETVRGVGYRI 223


>gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium abscessus ATCC 19977]
 gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response
           transcriptional regulatory protein) [Mycobacterium
           abscessus]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 10/167 (5%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LEVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173
            +  + A+   +       DP V  EV        L R E  +LE LMAN  + + +++I
Sbjct: 122 TIDES-ADAATLSFGDLTLDP-VTREVHRGTRSISLTRTEFALLEMLMANPRRVLTRSRI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G FD     N +E ++  LR+K   +     + + R +GY +
Sbjct: 180 LEEVWG-FDFPTSGNALEVYVGYLRRKTEAEGELRLIHTVRGVGYVL 225


>gi|156742742|ref|YP_001432871.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156234070|gb|ABU58853.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 231

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 15/135 (11%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNR-----AETGPIRVFSDGRDPEVQGEVFP 148
           G DD + KP   RE++ARV A++RR + +++       ++GP+ +     +  + GE   
Sbjct: 96  GADDYLTKPFSPRELVARVRAMFRRPRHADDEPAPLLVQSGPLTIDVARHEALLAGEPLK 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L   E  +L  L +  G+   + Q+   ++G  D   +++V++ HI+ LRK    KLG D
Sbjct: 156 LTNLEYALLSVLASAPGRVFTRAQLIERVWG-NDYFGDDHVIDVHIANLRK----KLGDD 210

Query: 209 P-----VDSKRFLGY 218
           P     + + R +GY
Sbjct: 211 PTRPTFIMTVRGIGY 225


>gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV------FSDGRDPEVQGE-V 146
           G DD + KP   RE++AR+ A+ RR +VS +  +T  + +       +D +   ++   V
Sbjct: 95  GADDYITKPFSPREVVARLKAVLRRSQVSTDTNKTDEMVISIQDLLINDSKKTVMKENIV 154

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKL 205
             L  RE  +L Y     G+ + +  I +A++G ++   E  +V+ HIS LR K+  N  
Sbjct: 155 LSLTPREYDLLLYFAQRLGRVIDRETILTAVWG-YEYTGESRMVDMHISNLRDKIESNPK 213

Query: 206 GFDPVDSKRFLGYSI 220
               + + R  GY++
Sbjct: 214 APKILKTVRGFGYTM 228


>gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2]
          Length = 251

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           G DD V KP    E++AR+ A+ RR +      N     G + +  D  +    G +  L
Sbjct: 104 GGDDYVTKPFSLEEVVARIRAVLRRTRSLEDEENAVIMAGDLELDDDTHEVRRSGILIDL 163

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              E ++L YLM N  + ++K+QI   ++  +D   +  +VES+IS LR+K+
Sbjct: 164 SPTEFKLLRYLMLNTNRVLSKSQILDHVWE-YDFGGDTGIVESYISYLRRKI 214


>gi|322833865|ref|YP_004213892.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321169066|gb|ADW74765.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 229

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 20/161 (12%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I +S     +  +   D+G DD + KP    E+LARV    RR      
Sbjct: 69  RDLRHWSAIPIIVLSARTREEDKIAALDAGADDFLTKPFGVGELLARVRVALRR---HTG 125

Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            A+  P+  FSD       R  +  G+   L   E R+L  L+AN GK + + Q+ S ++
Sbjct: 126 SAQESPLVTFSDVTVDLINRRVQRNGDDCHLTPIEFRLLAELLANSGKVITQRQLLSHVW 185

Query: 179 GLFDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216
           G        N VE H   LR     LR KL  D    +  L
Sbjct: 186 G-------PNYVE-HSHYLRIYMGHLRQKLEADATRPRHLL 218


>gi|299139099|ref|ZP_07032275.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598779|gb|EFI54941.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 238

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 20/167 (11%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           ++L R +R H   S VP+I ++   S    +   + G DD + KP   RE++ARV A+ R
Sbjct: 62  MDLCRRLRQHPTLSGVPVIFLTARASENDRVHGLELGADDYITKPFGTRELVARVRAVLR 121

Query: 118 RLKVSNNRAETGPIRVFS------DGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVA 169
           R + S      GP+ +        DG   +  V+GE+ P    E R+L+YL  +  +  +
Sbjct: 122 RFEPSEA---PGPLSIVKIEEIEIDGSAMQLRVKGELVPTTATEFRLLDYLARHPARVFS 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           + Q+  A++G         V    +    +++R K+  DP ++ R+L
Sbjct: 179 RDQLLDAVWG-----DARFVTPRSVDVYVRRIREKVEADP-ETPRYL 219


>gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
 gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
          Length = 235

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 20/202 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY      DGV      +LE  E +Q     ++  ++  L  K    +E+ R +R 
Sbjct: 22  LQKEGYEVFCAYDGV-----EALEKVEEVQP----EMILLDIMLPQKDG--MEVCREVRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRA 126
              +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   + V    +
Sbjct: 71  KYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQVAVPTEES 130

Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ET     G + +  D      +GE   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 131 ETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-Y 189

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D   +   V+  + +LR+K+ +
Sbjct: 190 DYFGDVRTVDVTVRRLREKIED 211


>gi|294665023|ref|ZP_06730331.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605214|gb|EFF48557.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 233

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR +  ++   + G  
Sbjct: 73  TPVLVLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQIGGF 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              +      + G    LP RE R+ E L+   G+ V K +I + ++G FD+    N +E
Sbjct: 133 VFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 191

Query: 192 SHISKLRKKL 201
            ++ +LR+KL
Sbjct: 192 LYVGRLRRKL 201


>gi|239928546|ref|ZP_04685499.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291436871|ref|ZP_06576261.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291339766|gb|EFE66722.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 228

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 10/160 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
           IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR   + +  
Sbjct: 68  IRKRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRTVHEETTG 127

Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            AE     GP+R+    R   V   V  L R+E  +L  L    G    + QI S ++  
Sbjct: 128 AAEAELRLGPVRIELPTRQVSVNDSVVQLTRKEFDLLALLAQRPGVVFRREQIISEVWRT 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E      +E H++ LR KLR     + V   R +GY +
Sbjct: 188 SWEGTGRT-LEVHVASLRAKLRMPALIETV---RGVGYRL 223


>gi|258515258|ref|YP_003191480.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778963|gb|ACV62857.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 227

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+  L +   IR  S  P+I I+   +++  L  F  G DD + KP    E++ARV A+ 
Sbjct: 57  GQDGLSVLEKIRKTSTCPVIVITARGAVKDRLQGFHLGADDYIAKPFDPDEVVARVKAVL 116

Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR    V  +  + G + V     +  ++G    L RR+  +L +L+ +  +  ++TQ+ 
Sbjct: 117 RRPARIVEADLVQFGHLTVDFTSCNAVLKGRNISLARRDWDLLSFLVRHPNQVFSRTQLL 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
             ++G+ D    +  V+  + +LR+ L++
Sbjct: 177 DYVWGI-DYDGGDRAVDVAVKRLRQALKD 204


>gi|229169817|ref|ZP_04297514.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613667|gb|EEK70795.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 223

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I +S   +    +   + G DD V KP +   ++A++ A+ RR   S  
Sbjct: 64  RKIREVSKVPIIFLSSRDNPMDMVMAMNMGGDDFVQKPFYTDVLVAKIQALMRR-TYSYT 122

Query: 125 RAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ET  +    V  + +  EV    ++  L + E +IL+ LM N G  V++  I   ++ 
Sbjct: 123 QTETNVVEHEGVVLNLQTGEVTYHNQILELTKNEFKILQMLMQNIGAIVSRDNIMRKLWE 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  V++N +  +++++RKKL      + + +K+  GY I
Sbjct: 183 -NESFVDDNTLTVNVARVRKKLAELGKEEFIHTKKGQGYII 222


>gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 267

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 24/167 (14%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R IRA    +P++ ++        +   DSG DD V KP    E+LARV A+ RR 
Sbjct: 101 LDVARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRA 160

Query: 119 ---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                    ++  + R E    R F   R+ ++  + F L       L  L+ + G  V+
Sbjct: 161 GGEVTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDL-------LRVLIRDAGSVVS 213

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           + Q+   ++G  D +     ++ H+S LR+KL      D  +S R++
Sbjct: 214 REQVMREVWG-SDPSGSTKTLDMHVSWLRRKL-----GDDANSPRYI 254


>gi|225028064|ref|ZP_03717256.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353]
 gi|224954612|gb|EEG35821.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353]
          Length = 236

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 27/207 (13%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKVLELPRIIR 68
           LV DGY  L   DG           E+ LQ+     +V  +   ++  G   LE+ R IR
Sbjct: 24  LVNDGYQVLKASDG-----------EQCLQTLKEHPEVRMLILDIMMPGIDGLEVCREIR 72

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV------- 121
             S +P++ +S        +  F +G DD + KP H  E+LARV +  +R          
Sbjct: 73  KTSNIPILILSAKAEDMDKIVGFGTGADDYLTKPFHPLELLARVKSQMKRYTTIQLGEEQ 132

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S +  E   + +       +  G+   L   E  IL  L +NR +  +  +IF  ++
Sbjct: 133 QPASKDEIEIQDLTINKAAHVVKKNGKEVALTPIEFDILYLLASNRDRVFSTDEIFEKVW 192

Query: 179 GLFDEAVEE--NVVESHISKLRKKLRN 203
              +E V E  N V  HI +LR+K+ +
Sbjct: 193 ---NEKVYEVNNTVMVHIRRLREKIED 216


>gi|188590529|ref|YP_001922225.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188500810|gb|ACD53946.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 224

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I  S        +   + G DD + KP     I+A+V A+ RR       +
Sbjct: 67  IRKISKVPIIFASSASDNMNLIMAINMGADDFIAKPFDLNVIVAKVQALIRR-----TYS 121

Query: 127 ETGPIRVF-SDGR-----DPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             G I +  S+G      D  +    +   L + E +IL+ L+ N+ K V++  I + ++
Sbjct: 122 FQGQINILESNGAVLNLGDTTITYNDKKLELSKNEFKILQILLENKNKAVSRDDIMTHLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D  +++N +  ++++LR+KL +    D + +K+ +GY
Sbjct: 182 N-SDSFIDDNTLTVNVTRLRRKLEDINLKDFIKTKKGMGY 220


>gi|168185636|ref|ZP_02620271.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
 gi|169296321|gb|EDS78454.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
          Length = 227

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSN-- 123
           +S++P++ +S    +   L     G DD + KP   RE++ R+ AI RR+     +SN  
Sbjct: 70  NSEIPIVVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRINKAKLLSNKK 129

Query: 124 --NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  E G I++  D R   +  +       E  IL  ++ N  K   + ++   I+G +
Sbjct: 130 QVNIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEILVLMVKNSYKVFTREELLDTIWG-Y 188

Query: 182 DEAVEENVVESHISKLRKKL 201
           D +     V+ HI ++RKKL
Sbjct: 189 DFSGNTRAVDIHIKRIRKKL 208


>gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
 gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
          Length = 237

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 25/223 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+ +GY  +   DG           +E L     EDV  +   ++      +E+ + +R 
Sbjct: 28  LLNEGYKVVKAKDG-----------QEALDIIENEDVDLLVLDIMMPKVNGIEVCKKVRQ 76

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRA 126
           +  +P++ +S        +    +G DD + KP +  E   RV A+ RR   L  +N+  
Sbjct: 77  NKNMPILMLSAKSEDMDKIQGLMTGADDYMTKPFNPLEFTVRVKALLRRSYYLNNNNSSE 136

Query: 127 ETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY--G 179
           E+  I V S   D         GE   L  RE  IL  + +N+G+  +  +IF  ++   
Sbjct: 137 ESDLINVGSLTIDKTRHRVVADGEEISLTAREFDILYLMASNKGRVFSSEEIFEKVWKEK 196

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            F      N V  HIS+LR KL   L G   + +   +GY I+
Sbjct: 197 YFQ---SNNTVMVHISRLRDKLDKHLNGEKIIHTVWGVGYKIE 236


>gi|153940472|ref|YP_001390134.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936368|gb|ABS41866.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318224|gb|ADF98601.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 6/145 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N  +   I +  D R+  +  +   L  RE  IL+ LM    K   K+ +F +
Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++   +   ++N +  HIS LR KL
Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKL 208


>gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 239

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 22/198 (11%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQ 85
           EG   LE   W          A+   L+  G   LE+ R  RA ++  P+I  S   S  
Sbjct: 39  EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMTRYTPIIITSARSSEV 89

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDP--- 140
             +   + G DD + KP    E++ARV A+ RR+     ++R + G + V     DP   
Sbjct: 90  HRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRLDAGTLDVAGLSIDPIAR 149

Query: 141 --EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G    L  RE  +L +   + GK  ++  + +A++G   E   E+ V +HI++LR
Sbjct: 150 EASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYRHEGY-EHTVNTHINRLR 208

Query: 199 KKLRNKLGFDPVDSKRFL 216
            K+      DP +  R L
Sbjct: 209 AKIEA----DPAEPVRIL 222


>gi|126737842|ref|ZP_01753572.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
 gi|126721235|gb|EBA17939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
          Length = 229

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +++ ++   +P+I +S        +   ++G DD V KP    E++ARV    R
Sbjct: 65  IEVCRRLKSRTETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELVARVRTQLR 124

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R + S    R E G I + ++        ++  L   E R+L   M   G+  ++ Q+  
Sbjct: 125 RSRPSAVGLRLEYGDIVLDAETHRVSRSDQMLKLGPTEFRLLSTFMEKPGRVWSREQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 185 RVWG-RDIYVDTRTVDVHIGRLRKALTQFGGDDPVRTVRGAGYAL 228


>gi|158319899|ref|YP_001512406.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140098|gb|ABW18410.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 231

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  S+VP++ +S     +  +   D+G DD + KP H  E+LAR+  + R+LK
Sbjct: 64  IDIIKSIRMISEVPILIVSARGEEKEKISALDAGADDYITKPFHMGELLARIRVVERKLK 123

Query: 121 --VSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             V  + AE   +   +   + R   V  +   L   E ++L  L+ N+GK +    I  
Sbjct: 124 KAVQGDNAEIFQLDYLTIDYERRMVLVDHKEIHLTPIEYKLLLLLVENKGKVLTHNYILK 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            I+G + E  +   +   ++ LR+K+
Sbjct: 184 KIWG-YGETGDSKSIRVFMANLRRKI 208


>gi|42523251|ref|NP_968631.1| two-component response regulator KdpE [Bdellovibrio bacteriovorus
           HD100]
 gi|39575456|emb|CAE79624.1| two-component response regulator KdpE [Bdellovibrio bacteriovorus
           HD100]
          Length = 230

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 10/142 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R+ S+VP+I ++   S    +   D G DD + KP    E+L R+    R      N A
Sbjct: 71  LRSWSKVPVIVLTVQDSDNDKIAALDGGADDYITKPFSVPELLVRMRVALRH--SPQNAA 128

Query: 127 E-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           E     +GP++V   G    V+GE+  L   E  IL+ L+ N+ K V    + + ++G  
Sbjct: 129 EKTEMVSGPLKVDVPGHTVTVEGELVKLTATEFNILKVLIKNKDKVVTHRMLLNEVWG-- 186

Query: 182 DEAVEE-NVVESHISKLRKKLR 202
             +VE  + +  ++  LRKKL 
Sbjct: 187 PNSVEHTHYLRVYVGGLRKKLH 208


>gi|325473570|gb|EGC76762.1| response regulator [Treponema denticola F0402]
          Length = 232

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  SQVP+I +S        +     G DD + KP      +A++ A+ RR      S 
Sbjct: 70  IRNKSQVPIIFLSSRNDKMDIVMAMQMGGDDYIEKPFDMDVTIAKIQAVIRRTYQFTASM 129

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N        +           +   L   E +IL+ L   +G+ V++ +I   ++   ++
Sbjct: 130 NEVGFAGTVLNLSTLTLVYNNKTTLLTANEIKILKCLYLAQGEFVSREKIMDVLWQ-NNQ 188

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            V++N +  +I++LRKKL N   F+ +++K+ LGY ++
Sbjct: 189 FVDDNTLSVNITRLRKKLENAGLFNFIENKKGLGYKLN 226


>gi|300921717|ref|ZP_07137883.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|301329917|ref|ZP_07222638.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|300421855|gb|EFK05166.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300844016|gb|EFK71776.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
          Length = 240

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGIDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  + + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|291615861|ref|YP_003518603.1| QseB [Pantoea ananatis LMG 20103]
 gi|291150891|gb|ADD75475.1| QseB [Pantoea ananatis LMG 20103]
          Length = 228

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 18/204 (8%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPR------IIRAHSQ---VPLIG 77
            +LE   W     R+ V A  A+  G    VL    LPR      + RA  +    P++ 
Sbjct: 27  QALEAAGWSVDWVRDGVYAQNAWSEGGYSCVLLDLGLPRDDGLQVLRRARGRGDATPVLI 86

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSD 136
           ++   ++   +   D G DD + KP   +E++AR+ AI RR   S +    +G +++   
Sbjct: 87  LTARDTVAQRVQGLDYGADDYLLKPFDLQEVMARMRAITRRHHGSADSVLGSGDVQLDML 146

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R+   +G+   L  RE  +L  L+   G  +++ Q+ + IYG + E V  N V+  I  
Sbjct: 147 TREVLYKGQREQLTAREYALLYALLERPGAILSREQLENRIYG-WGEEVSSNAVDVLIHG 205

Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220
           +R+KL N    D + + R LG+ +
Sbjct: 206 MRRKLDN----DVIRNVRGLGWRV 225


>gi|229098913|ref|ZP_04229848.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229105077|ref|ZP_04235728.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228678258|gb|EEL32484.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228684411|gb|EEL38354.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 235

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 15/170 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI--DWN 223
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++  +W+
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYALLTEWS 230


>gi|255102528|ref|ZP_05331505.1| two-component system, response regulator [Clostridium difficile
           QCD-63q42]
          Length = 217

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P++ ++ +   +  +D F + VD  V KP     +  R+ ++ ++  
Sbjct: 59  LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKVRIDSLIKKNY 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   + V  +    ++ GE   +  +E  +L+ L+ N G+ + + QI   ++  
Sbjct: 119 GHLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELDVLKCLLDNDGQVLTRMQIIDYVWKD 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + V++ +I +LRKKL+     D + + R +GY ++
Sbjct: 179 SEEIPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215


>gi|297582600|ref|YP_003698380.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141057|gb|ADH97814.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 240

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
           IR  S  P++ ++    L   L  FD G DD + KP H  E++AR+AA+ +R   +   +
Sbjct: 81  IRERSDCPVVMLTALDELDDRLKGFDGGADDYIAKPFHGEEVVARIAAVLKRQPSEEKTD 140

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E G + +    R   + G+   L  ++  +L +L  +  +  ++ ++   ++G +D  
Sbjct: 141 AMEFGDLEIRDGERRVYLSGKQVELTPKDTALLIHLAKHPNRVWSRDELIEHVWG-WDYT 199

Query: 185 VEENVVESHISKLRKKLRN 203
             +  V+  + ++R+ LR 
Sbjct: 200 GSDRAVDLAVKRIRQALRK 218


>gi|42783577|ref|NP_980824.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739506|gb|AAS43432.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 235

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|83745654|ref|ZP_00942712.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551]
 gi|83727731|gb|EAP74851.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551]
          Length = 245

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 3/170 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G+  LE+ R +RA S +P++ ++        L   + G DD + KP   RE++AR+
Sbjct: 77  LMLPGKDGLEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARI 136

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I RR++    + E+  + + +      ++G+   L   E R+L  L    G+ +++  
Sbjct: 137 KTILRRVQRGGAQPES-LLLIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRAN 195

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   IY      V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 196 LLEQIYD-DHRIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 244


>gi|148547536|ref|YP_001267638.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148511594|gb|ABQ78454.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 233

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R++R  SQ +P++ ++        +   + G DD V KP   R +LARV  + RR 
Sbjct: 61  LQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS 120

Query: 120 KVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            V+  R E      G +R+    R    +GE   L   E  +L  L  N G+ + + +I 
Sbjct: 121 SVNEPRLENDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
             + G+     + + V+  ISKLR+K  +  G       V  K +L   ++W
Sbjct: 181 QQLRGIEFNGTDRS-VDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEW 231


>gi|332306728|ref|YP_004434579.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174057|gb|AEE23311.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 224

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 2/148 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   +L   L+ F++G DD + KP   +E++AR+  + RR      R   G + 
Sbjct: 74  TPVLMLTARDTLDNKLEGFNAGSDDYLVKPFAMQELIARIQVLGRRRSGETKRLMVGGLT 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    R   +  +   L      ILE LM    + V +  I   ++G  D+  + N ++ 
Sbjct: 134 LDLTQRIATLNQQPLKLSPTALAILEVLMRASPQTVTRQHIIQTVWG--DDQPDSNSLKV 191

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           HI  LRK+L        +D+   +G++I
Sbjct: 192 HIYHLRKQLERYESSISLDTIASVGFAI 219


>gi|326692618|ref|ZP_08229623.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 210

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 16/205 (7%)

Query: 18  LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP-------- 64
           L  +D +SL+ +  N L FE +    A +    +       G+ VL    LP        
Sbjct: 5   LIIEDEMSLQFYLKNELTFEGYTVLQAFDGQQGLALLASETGDAVLLDWMLPKKSGMAVL 64

Query: 65  RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS 122
           R +R  +Q +P+I ++    L   +   D+G DD + KP    E+LAR+  + RR +   
Sbjct: 65  RHVRQTNQTLPVILMTAKSELDDKVMGLDNGADDYLTKPFETEELLARLRVVLRRQVAPV 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E   + + +     +   ++  L +RE  +L +LM + G+ V++  I   ++G+ D
Sbjct: 125 QTTFEVADLTLNTTTHRVQRGDQLIALTQREFDLLAFLMQHEGQVVSRDAILDHVWGI-D 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGF 207
            A + N V+ +I  LR+K+   L  
Sbjct: 184 FAGQYNTVDVNIHHLRQKIELALAL 208


>gi|229134252|ref|ZP_04263067.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228649182|gb|EEL05202.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 233

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K+ S    
Sbjct: 78  RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQTI 137

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +           E   LP +E  +L  L    G+   + Q+   I+G+ D A +
Sbjct: 138 HLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGI-DYAGD 196

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  V+ HI +LR++      F  +++ R LGY ++
Sbjct: 197 DRTVDVHIKRLRERFATTHDFR-IETVRGLGYRLE 230


>gi|227114540|ref|ZP_03828196.1| two-component system response regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 226

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 11/204 (5%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF++   L  +E +  +   D +A+   ++      +++ R IR   Q+P+I ++    
Sbjct: 23  EGFSTSRVLTGKEGVDGAISGDYTAMILDVMLPDMSGIDVLRQIRKTQQLPVIMLTARGD 82

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDG 137
               +   + G DD + KP + RE++AR+ A+ RR       K   + A +G + +    
Sbjct: 83  NIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYDDQPSTKRDESLAASGDLVLNPAT 142

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R  E +G+ F L   E  +LE L+ +  + V+K ++     G   EA + + V+ HIS +
Sbjct: 143 RISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELSEKCLGRRREAYDRS-VDVHISNI 201

Query: 198 RKKLRNKLGFD-PVDSKRFLGYSI 220
           R+KL    G    +++ R +GY I
Sbjct: 202 RQKLGALPGNTMTIETVRSVGYRI 225


>gi|207724835|ref|YP_002255232.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207739498|ref|YP_002257891.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|206590060|emb|CAQ37021.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206592877|emb|CAQ59783.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 222

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 3/170 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G+  LE+ R +RA S +P++ ++        L   + G DD + KP   RE++AR+
Sbjct: 54  LMLPGKDGLEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARI 113

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I RR++    + E+  + + +      ++G+   L   E R+L  L    G+ +++  
Sbjct: 114 KTILRRVQRGGAQPES-LLLIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRAN 172

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   IY      V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 173 LLEQIYD-DHRIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 221


>gi|71280052|ref|YP_267764.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71145792|gb|AAZ26265.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 256

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +RA     L+ +S   S +  ++ F  GVDD + KPI  R ++ R+ A++RR +
Sbjct: 87  LLIIRDLRALFDGLLVIVSSKNSEKEQVEAFKLGVDDYLLKPIDSRILMMRIEALFRRQR 146

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              N+ E   + +      P+ Q     GEV  L   E  +L+ L+ ++GK +++ Q++S
Sbjct: 147 HKINQVELASLTMGDVCLQPKSQKCFINGEVVKLTTFEFNLLKSLVEHQGKILSRDQLYS 206

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            +       VE   ++  +S+LR+KL
Sbjct: 207 TLLRRVYNGVER-TLDVRMSQLREKL 231


>gi|13473757|ref|NP_105325.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14024508|dbj|BAB51111.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 227

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 5/155 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
           A  + P I ++    +   ++  ++G DD + KP    E+LAR+ A+ RR      +   
Sbjct: 69  AGVRTPAIFLTSIGGIDDRVEGLEAGGDDYLVKPFAFSELLARINALGRRPAAQEQKTVL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
               + +    R    QG+   L  RE  +LE LM   G+ + +T +   ++   FD   
Sbjct: 129 RVADLEMDLIMRRVTRQGQPIDLQPREFSLLEVLMRGEGRVITRTMLLERVWDFHFDP-- 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +VVE+HIS+LR K+        + + R  GYS+
Sbjct: 187 KTSVVETHISRLRAKVDKPFEAQLIHTIRNTGYSL 221


>gi|329296063|ref|ZP_08253399.1| winged helix family two component transcriptional regulator
           [Plautia stali symbiont]
          Length = 224

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 19/160 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I +S     Q  ++  D+G DD + KP    E+LARV    RR    + 
Sbjct: 65  REVRQWSSMPVIVLSARSDEQDKIEALDAGADDYLTKPFGIGELLARVRVALRR----HQ 120

Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           R++  P+  F +       R     GE   L   E R+L  L+ N GK + + Q+ + ++
Sbjct: 121 RSQPEPLVQFGEVSVDLAARHVLRSGEEVHLTPTEFRLLSLLLNNAGKMLTQRQLLNQVW 180

Query: 179 GLFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216
           G        N VE SH  ++    LR KL  +P      L
Sbjct: 181 G-------PNAVEHSHYLRIYMGHLRQKLEANPTQPTHLL 213


>gi|327405853|ref|YP_004346691.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327321361|gb|AEA45853.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 227

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  SQVP++ ++   + +      DSG DD + KP    E+ ARV ++ RR  + N   
Sbjct: 67  IRETSQVPILMLTALGTPENVALGLDSGADDYLPKPFKFIELNARVRSLLRR--IENQVT 124

Query: 127 ETGPIRVFS-----DGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +  FS     D R   ++ G +  L   E R+L   M +  K  ++  I   ++G+
Sbjct: 125 ASSTLFSFSDLVIDDDRKTVIRNGHLITLTSTEYRLLLLFMMSPKKVFSRIDILEEVWGI 184

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D     NVV+ +++ LRKKL
Sbjct: 185 -DFESGTNVVDVYVNYLRKKL 204


>gi|307312356|ref|ZP_07591990.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|306907527|gb|EFN38030.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|315061354|gb|ADT75681.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli W]
 gi|320198770|gb|EFW73370.1| Response regulator BaeR [Escherichia coli EC4100B]
 gi|323183860|gb|EFZ69251.1| transcriptional regulatory protein baeR [Escherichia coli 1357]
 gi|323378066|gb|ADX50334.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
          Length = 240

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGIDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  + + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 231

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N    + E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNASSPKNEDGMIRIRSAEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETVMNGEKFIHTVWGVGYKIE 230


>gi|292486824|ref|YP_003529694.1| putative transcriptional regulator Ycf27 [Erwinia amylovora
           CFBP1430]
 gi|291552241|emb|CBA19278.1| probable transcriptional regulator ycf27 [Erwinia amylovora
           CFBP1430]
 gi|312170892|emb|CBX79151.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 251

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D  L++ G  +AL G+        N+ +   +LQS     V          G  +
Sbjct: 35  ILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGADL 94

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R  +    +P++ +S   +L   +D  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 95  LRQWR--KEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 152

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  + G I +    +   V  +   +  +E  +L  L+   G+ V +  +   +Y 
Sbjct: 153 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 212

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+    N +E H+  LR+    KLG D + + R +GY ++
Sbjct: 213 WQDD-TSSNTLEVHMHNLRR----KLGKDRIKTVRGVGYRLE 249


>gi|262371688|ref|ZP_06064967.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311713|gb|EEY92798.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 227

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S +P+I ++        +   + G DD + KP   +E++ARV A+ RRL+
Sbjct: 61  LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179
                 +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I   
Sbjct: 121 RKAEPEQNDLFRIDKAQQRIWYQQKALTLTPTEFRLLELFLEHLGQVYSRAQLLDHINPD 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            FD  V + V++SHI  LR+K+
Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200


>gi|260687106|ref|YP_003218240.1| two-component response regulator [Clostridium difficile R20291]
 gi|260213123|emb|CBE04540.1| two-component response regulator [Clostridium difficile R20291]
          Length = 247

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 17/146 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P++  +      + +    +G DD + KP    E++AR+A++ RR    N +A
Sbjct: 84  IRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 143

Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             G I+  +        + R        F LP +E  +L Y   ++GK + K QI+  ++
Sbjct: 144 --GAIQKLNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 201

Query: 179 G---LFDEAVEENVVESHISKLRKKL 201
           G    +D++   N++ + IS+LRKKL
Sbjct: 202 GEEYFYDDS---NIM-AIISRLRKKL 223


>gi|254694764|ref|ZP_05156592.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 3 str. Tulya]
 gi|261215091|ref|ZP_05929372.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260916698|gb|EEX83559.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 228

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +     G DD V KP    E+LARV A+ R
Sbjct: 64  IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         LKV +   +    RV+   ++ EV      L   E R+LEY M + G+  
Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++Q+   ++G  D  V++  V+ H+ +LRK +      D + + R  GYS
Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYS 226


>gi|228959449|ref|ZP_04121138.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800225|gb|EEM47153.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 225

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHRTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|228988342|ref|ZP_04148435.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771407|gb|EEM19880.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 223

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I +S   +    +   + G DD V KP +   ++A++ A+ RR   S  
Sbjct: 64  RKIREVSKVPIIFLSSRDNPMDMVMAMNMGGDDFVQKPFYTDVLVAKIQALMRR-TYSYT 122

Query: 125 RAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ET  +    V  + +  EV    ++  L + E +IL+ LM N G  V++  I   ++ 
Sbjct: 123 QTETNVVEYEGVVLNLQSGEVTYHNQILELTKNEFKILQVLMQNVGSIVSRDNIMRKLWE 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  V++N +  +++++RKKL      + + +K+  GY I
Sbjct: 183 -NESFVDDNTLTVNVARVRKKLAELGKEEFIHTKKGQGYII 222


>gi|227890323|ref|ZP_04008128.1| two component response regulator [Lactobacillus johnsonii ATCC
           33200]
 gi|227849137|gb|EEJ59223.1| two component response regulator [Lactobacillus johnsonii ATCC
           33200]
          Length = 221

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            DSG DD + KP   +E+LAR+ +  RR  + + N  E G +   +      V      L
Sbjct: 91  LDSGADDYLTKPFSLKELLARLRSKERRDDQYTPNEVEVGDL-ALNVAEQELVSHNSIRL 149

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +E ++L YLM N GK  + + + + ++   DE   E+VV  +IS LR+KL++
Sbjct: 150 GSKETQLLNYLMLNEGKEFSTSDLLAHVWKDDDET-SEDVVWIYISYLRQKLQS 202


>gi|226364525|ref|YP_002782307.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243014|dbj|BAH53362.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 228

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 22/231 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++   A    +G  +   +       + +++  DV  ++  L   G   L
Sbjct: 6   VLVVDDEATIREAVAARLRAEGFDVVTASDGPAAVTVCAASSPDVLVLDVML--PGFDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++A   VP++ ++        L     G DD ++KP   R ++ARV A+ RR   
Sbjct: 64  EVCRRVQASRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRRADR 123

Query: 122 SNNR--AETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAK 170
           ++    AE G + V     D EV           +   L R E  +L Y  +     +A+
Sbjct: 124 AHEAVPAERGGLAVG----DLEVDLVERRVRRGADEIHLTRTEFDLLAYFASRPRAAIAR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + + ++G  D A     V+SH+    K LR KLG D + +   +GY++D
Sbjct: 180 ESLLAEVWGWGDGA-GSRTVDSHV----KALRRKLGGDLIRTVHGVGYALD 225


>gi|170758492|ref|YP_001786348.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
 gi|169405481|gb|ACA53892.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
          Length = 228

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 16/165 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---- 122
           +R  SQVP+I I+        +  F  G DD + KP    E+  R+ AI RR  V+    
Sbjct: 67  LREISQVPVIMITAKGQQSDKVLGFIKGCDDYLVKPFDLTELSFRIRAILRRTNVTHKKD 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N++     + +  D       G+   L ++E  IL  L +N+GK  + + I+  ++   D
Sbjct: 127 NDKIYINDLEIIVDEFTVLKNGQRLKLTKKEFEILVLLASNKGKVFSPSVIYETLWN--D 184

Query: 183 EAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
             +E +N V +HI    + LR K+G    +SK       +GYSI+
Sbjct: 185 SYIENDNSVLTHI----RNLREKIGDRAKNSKYIKTIWGVGYSIE 225


>gi|24379907|ref|NP_721862.1| putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|290580113|ref|YP_003484505.1| putative response regulator [Streptococcus mutans NN2025]
 gi|14600271|gb|AAK71319.1|AF393849_1 responder protein CovR [Streptococcus mutans]
 gi|24377886|gb|AAN59168.1|AE014984_3 putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|254997012|dbj|BAH87613.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 235

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R +S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEVRKNSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 -VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            + +  AE           G +++  D    + +G    L  RE  +L +L  + G+ + 
Sbjct: 121 NIESAVAEENASGIPEIIIGDLQILPDAFVAKKRGTEVELTHREFELLHHLATHTGQVMT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 213


>gi|94313647|ref|YP_586856.1| putative two component transcriptional regulator, winged helix
           family [Cupriavidus metallidurans CH34]
 gi|93357499|gb|ABF11587.1| Putative two component transcriptional regulator, winged helix
           family [Cupriavidus metallidurans CH34]
          Length = 261

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 15/180 (8%)

Query: 26  LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           ++G     +E  L      D+SAI+         V+   R +R +  VP++  +   +  
Sbjct: 41  IQGLGHDTYEMLLIDRELADISAID---------VIRTVRAVR-NRDVPIVIFASENNDD 90

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPE 141
             ++  D+G DD V +P+  R +LAR+AA+ RR+  +  R       GP  + + GR   
Sbjct: 91  DLVEALDAGADDYVLRPLAARVLLARIAALRRRMSGTRLRGAMPLRAGPYELSNPGRYAT 150

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + G   P+  +E  +   + AN G+ +A  +I   I+G  D       +   +S++R+ L
Sbjct: 151 LNGGRIPMTPKEFDLAMLMFANAGRILASRRIEHTIWG-HDLPPYSRALAGLVSRMRRTL 209


>gi|326387405|ref|ZP_08209014.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208061|gb|EGD58869.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 263

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 35/230 (15%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKVLE 62
           L+  RAL   GY     D G +  G      E W+   S   D+  ++  L   G+  +E
Sbjct: 45  LLTARALRAHGY-----DVGTASTGA-----EMWVALESGAVDLIVLDIML--PGQTGIE 92

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S VP+I IS   S    +   + G DD + KP   RE++AR+ A+ RR +  
Sbjct: 93  LFRRLRRDSDVPVIFISARGSEDDRVLGLELGADDYLPKPFGTRELIARIGAVLRRGQAE 152

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA--------------NRGKRV 168
           + R    P R    GRD E  G    L R E R  +  +               N+ +RV
Sbjct: 153 DER----PAR----GRDLEFDGWRLSLGRHELRSPQGALVDLTGAEFDLLATFLNQPQRV 204

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              Q    +         +  ++  +S+LR+KL    G  P+ + R +GY
Sbjct: 205 IGRQRLIELSRTRQSDSSDRSIDVLVSRLRRKLTGPSGNAPIVTVRGVGY 254


>gi|309799600|ref|ZP_07693826.1| response regulator [Streptococcus infantis SK1302]
 gi|308116788|gb|EFO54238.1| response regulator [Streptococcus infantis SK1302]
          Length = 219

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR     P++ ++        +    +G DD + KP    E++ARV A  RR     + +
Sbjct: 66  IRDRVDCPILFLTAKSLESDIVSGLSTGADDYILKPFGVNELIARVDAHLRRENRERHLS 125

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G IR         V  +  P  + E RI E L   RG+  ++ QI+  I+G +D   
Sbjct: 126 LNLGEIRFDLSANMIYVNDKKIPFTKSEYRICELLARRRGQVFSREQIYEMIFG-YDGIG 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + +  HI  +R KL+ K G  PV +   +GY
Sbjct: 185 NSSAISEHIKNIRAKLQ-KEGVSPVVTVWGIGY 216


>gi|302339190|ref|YP_003804396.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636375|gb|ADK81802.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 233

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S VPL+ ++   S    +  F+ G DD V KP   +E++ RV A+ +R   S
Sbjct: 63  LAKTIREFSNVPLMFLTAKDSESDRILGFEMGADDYVTKPFSTKELVLRVQALLKRYTYS 122

Query: 123 NNRAETGPIRVFSDGRDPE---------VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   TG    + +    E         + G    L   E +IL YL       V++ +I
Sbjct: 123 RSEL-TGKNSWYCEEHKLEIDQKTHHLLIDGNEAYLTGAEWKILLYLAKQESIVVSRERI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            +     F E   E  V++HI+ LR KL
Sbjct: 182 LAECLNYFFEG-SERTVDTHIANLRSKL 208


>gi|229168168|ref|ZP_04295895.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228615263|gb|EEK72361.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 233

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K+ S    
Sbjct: 78  RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQTI 137

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +           E   LP +E  +L  L    G+   + Q+   I+G+ D A +
Sbjct: 138 HLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGI-DYAGD 196

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  V+ HI +LR++      F  +++ R LGY ++
Sbjct: 197 DRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLE 230


>gi|194290021|ref|YP_002005928.1| chemotaxis protein CheY [Cupriavidus taiwanensis LMG 19424]
 gi|193223856|emb|CAQ69865.1| Putative response regulator, CheY family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 224

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ +  + +P++ ++ + S++  +   D G DD + KP    E+ AR  A+ RR    
Sbjct: 63  LRRLRQRRNPLPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSELEARARALIRRAHGH 122

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++ +   GP+   S  R   + G++ PL  RER +LE L+   G+ V K  +   I+G+ 
Sbjct: 123 DSTQIAFGPLHYDSVSRAFLLHGQLLPLTGRERAVLEVLLLRDGRAVNKGALSEKIFGI- 181

Query: 182 DEAVEENVVESHISKLRKKL 201
           DE+V  + +E ++ +LRKKL
Sbjct: 182 DESVNPDAIEIYVHRLRKKL 201


>gi|187779752|ref|ZP_02996225.1| hypothetical protein CLOSPO_03348 [Clostridium sporogenes ATCC
           15579]
 gi|187773377|gb|EDU37179.1| hypothetical protein CLOSPO_03348 [Clostridium sporogenes ATCC
           15579]
          Length = 219

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 77  GISDYPSLQTTLDFFDS--------GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           G+ D P L  T    +S        G DD + KP    E+ ARV A  RR          
Sbjct: 68  GMVDCPILFLTAKTMESDIMFGLGIGGDDYITKPFGVGELKARVNAHLRREHREKRHIFV 127

Query: 129 GPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
               +F+        G+V  P  + E  I EYL  N G+  +K QI+ A+YG +D   + 
Sbjct: 128 ASDIIFNLSSKEIKIGDVKVPFTKGEYAICEYLARNSGQVFSKEQIYEAVYG-YDGESDS 186

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + +  HI  +R KL+      P+++   +GY
Sbjct: 187 SAITEHIKNIRAKLK-VFDMSPIETVWGIGY 216


>gi|89072466|ref|ZP_01159045.1| DNA-binding response regulator [Photobacterium sp. SKA34]
 gi|89051998|gb|EAR57450.1| DNA-binding response regulator [Photobacterium sp. SKA34]
          Length = 235

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 7/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  + +R  ++ P+I IS        +   D+G +D + KP    E+LAR+  +  RL 
Sbjct: 64  LEFTKELRTWTETPIIVISARDKEADKVQALDAGANDYLTKPFGSEELLARI-RVALRLH 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N   E    R      D  +Q     GE   L  +E +IL  L  N GK +   QI  
Sbjct: 123 SHNTATEVSQYRFGDVLLDMAMQTVMYNGESIKLTPKEYKILTLLAKNMGKVLTHKQILK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G  +     + V  HI++LR K+
Sbjct: 183 EVWG-GNYTEHAHYVRIHIAQLRHKI 207


>gi|114565051|ref|YP_752565.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114336344|gb|ABI73726.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 225

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 16/170 (9%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ + IRA H  + +I ++   SL+  +   D G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LQVMQYIRAQHPALAVIILTARDSLEDRVKGLDLGADDYLVKPFDITELLARIRAVTRRN 119

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +++NN     P    +      +  +   L  RE  +L+ L+   G   +K+ +
Sbjct: 120 ANQHTSELTNNIVWLNP----ATHEAKTLTQDNILLSNREFALLQTLLIRPGSIHSKSDL 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              IYG + E VE N VE  I  LRK    KLG + + + R +G+ +  N
Sbjct: 176 EERIYG-WGEEVESNAVEFLIHCLRK----KLGTETIKNVRGVGWMVSKN 220


>gi|22536308|ref|NP_687159.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|77412156|ref|ZP_00788478.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|22533130|gb|AAM99031.1|AE014196_27 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|77161774|gb|EAO72763.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
          Length = 223

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 104/210 (49%), Gaps = 13/210 (6%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L ++GY  +   +G   E  N L+ EE      +  ++ I   ++   + + EL     A
Sbjct: 21  LTQEGYQFITASNGQ--EALNCLDTEE-----VQLIITDIMMPMMDGYQLIQELRS---A 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128
              VP+I ++    ++     F  G DD + KP+  +E+  R+ A+ RR   V+ ++   
Sbjct: 71  AYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLRRANIVAQHQLII 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G   +  D    +   +    P++E R+L +L++   +   + ++  +I+G+ D  ++E 
Sbjct: 131 GNTCLNEDELSLKYFEQEIIFPQKEFRVLFHLLSYPNRIFTRLELLDSIWGM-DTDLDER 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VV++ I+K+R+K+ +   F  +++ R +GY
Sbjct: 190 VVDACINKIRRKVEHLPDF-KIETVRGVGY 218


>gi|325829921|ref|ZP_08163379.1| putative DNA-binding response regulator MtrA [Eggerthella sp. HGA1]
 gi|325488088|gb|EGC90525.1| putative DNA-binding response regulator MtrA [Eggerthella sp. HGA1]
          Length = 263

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 32/243 (13%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            V+I+D A + +        +G +  + F+  E    L  S   D+   +  L G  GE 
Sbjct: 27  IVIIEDDADINEVVAVHLRRNGFACTQAFSGSEGRLLLSGSEPFDLVITDLMLPGMAGED 86

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           V+   R++RA   +P+I +S   +    +     G DD + KP    E+LARV    R  
Sbjct: 87  VV---RLVRARGDMPVIVMSARTTAADKVALLKLGADDYLTKPFDLDELLARVQVQLRHA 143

Query: 120 KVSNNRAETGPIRVFSDGRDPE----------------------VQGEVFPLPRRERRIL 157
            V    A   P    SD R PE                      V+ E   L R E  IL
Sbjct: 144 DVRRASASGAP----SDERLPEPAAATAMRYKDWTLDVDARTLSVREEPVRLTRLEFNIL 199

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           E L+    K   K ++F   +   + AVEE  +  H+S +R KLR       +++   +G
Sbjct: 200 EALVRRPRKVFTKRELFEIAWN-EESAVEEKAINVHVSNIRSKLRAAHSAGEIETVWGIG 258

Query: 218 YSI 220
           + +
Sbjct: 259 FKL 261


>gi|325831421|ref|ZP_08164675.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|325486675|gb|EGC89123.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 71/145 (48%), Gaps = 9/145 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S VP+I ++        +  F+ G DD V KP   RE++ARV A  RR  +SN+
Sbjct: 68  RELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRR-AISND 126

Query: 125 RA-ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            A E GP       I +        + GE   L  +E  IL  LM ++G+ VA   +F +
Sbjct: 127 VAREDGPGMLECCGIALDESAYTATLHGEALSLTPKEFAILACLMRDQGRPVASRDLFES 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G    A   N V  HI  LRKKL
Sbjct: 187 VWGEIANAQSNNTVMVHIRHLRKKL 211


>gi|319793018|ref|YP_004154658.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595481|gb|ADU36547.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 20/178 (11%)

Query: 54  IGKGEKVLELPRIIRAHSQVPL-IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +G G+ +  LP++ RA  + P+ I ++    +   +   D+G DD + KP    E+LAR+
Sbjct: 54  LGDGDGLSLLPQV-RALREPPIVIVLTARDQVTDRIRGLDAGADDYLIKPYDPAELLARL 112

Query: 113 AAIYRRLKVSNNRAETGPIRVFS----DGRDPEVQGEVFP--LPRRERRILEYLMANRGK 166
            A+ RR       A T P+  F     D     V+ +  P  L ++E  +L  +MA R +
Sbjct: 113 RAVERR-----RSANTSPVLHFGTLEIDLAHDRVRKDGTPVVLTQKEWALLR-VMATRPE 166

Query: 167 RV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           R+  +  +  A+YG  DEA + N +E  IS+LR+    KLG   + + R LGY + ++
Sbjct: 167 RIHTRENLADALYGFGDEA-DSNTLEVFISRLRR----KLGKSHIQTLRGLGYRLSFS 219


>gi|300693798|ref|YP_003749771.1| transcriptional regulator of hrp gene cluster, ompr family
           [Ralstonia solanacearum PSI07]
 gi|299075835|emb|CBJ35144.1| Transcriptional regulator of hrp gene cluster, OmpR family
           [Ralstonia solanacearum PSI07]
          Length = 246

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146
           F++GVDD++       E+ ARV  + RR +     A      GP R+    R   V    
Sbjct: 92  FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNEAP 151

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L  RE      L ++ G  +++ QI SA++G  D ++ E  +E HI KLRKKL
Sbjct: 152 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 205


>gi|292670812|ref|ZP_06604238.1| two component response regulator [Selenomonas noxia ATCC 43541]
 gi|292647433|gb|EFF65405.1| two component response regulator [Selenomonas noxia ATCC 43541]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 3/133 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
            D+G DD + KP    E+LAR+ A+ RR   ++ +   E G  ++       E  G++  
Sbjct: 91  LDAGADDYLVKPFEFSELLARLRALGRRTTQRIQHEVDEIGGFKLNRTANILEKNGKMIQ 150

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L  RE ++ + L  N G  V +  I   I+GL +  V  N ++S++  LRKKL       
Sbjct: 151 LSPREFQLFDLLAQNIGIVVPRDIILDRIWGL-ESDVSSNNIDSYMKMLRKKLDAAGEGS 209

Query: 209 PVDSKRFLGYSID 221
            + + R +GY ++
Sbjct: 210 VIKTIRGVGYKLE 222


>gi|229105162|ref|ZP_04235813.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-28]
 gi|228678343|gb|EEL32569.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-28]
          Length = 230

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A+I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G    L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|255280853|ref|ZP_05345408.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
 gi|255268790|gb|EET61995.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL R++R     QVP++ ++        +  F++G DD V KP     + +R+ A+ RR 
Sbjct: 62  ELCRLVRRLWGGQVPVLYLTVRGGTADIVGGFENGADDYVVKPFALEVLYSRILALLRRS 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V       G + +  + +    + E   L   E +IL  LM N+GK V + Q+   ++
Sbjct: 122 SRVEEMHLSCGCLSLDRERQAVFCRQEEIRLSSLEYQILLLLMENKGKTVTRKQLLEQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                 V +N +   + +LR+KL N      +   R  GY ++
Sbjct: 182 DSGGNFVNDNTLTVAMKRLREKLHNPSCLKTI---RSFGYRME 221


>gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|170729101|ref|YP_001763127.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169814448|gb|ACA89032.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 24/231 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A   +  +  F + G ++E  +       L +S + D+  ++  L    G K+
Sbjct: 3   ILLVEDDATTIEYVVKGFTEQGHNIETASDGHQGLLLATSMKYDLILLDRMLPQLDGLKL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L   R     SQ P++ +S    +   +    +G DD + KP    E+L R   + +R  
Sbjct: 63  LAALRA--TGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGL 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L V N   E    +V  DG +  +Q + F       ++L+YLM +  + +++T
Sbjct: 121 SQPAETGLTVGNLVMELLTRKVTLDGNELMLQPKEF-------QLLKYLMEHPNQVISRT 173

Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +F A++   FD     NV++ HI+KLR+K   +LGF + +++ R  GY +
Sbjct: 174 LLFEAVWDYHFDP--RTNVIDVHIAKLRRKF-EELGFGELIETVRGAGYRL 221


>gi|39934999|ref|NP_947275.1| two-component transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|192290532|ref|YP_001991137.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39648850|emb|CAE27371.1| two-component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192284281|gb|ACF00662.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 241

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 11/156 (7%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           ++ P++ +S    +   +    +G DD + KP    E+LARV  + RR       AE   
Sbjct: 86  NRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRR---HGGPAEETS 142

Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
            RV     D         GE   L  RE R+LEYLM + G+ V +T +   ++   FD  
Sbjct: 143 YRVADLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFDP- 201

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + NV++ HIS+LR K+        + + R  GY I
Sbjct: 202 -QTNVIDVHISRLRSKIDKGFDHPLLHTIRGAGYMI 236


>gi|325263303|ref|ZP_08130038.1| DNA-binding response regulator RegX3 [Clostridium sp. D5]
 gi|324031696|gb|EGB92976.1| DNA-binding response regulator RegX3 [Clostridium sp. D5]
          Length = 243

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 13/147 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            E  R IRA S VP++ ++   +    +   + GVDD + KP     + ARV  +  R  
Sbjct: 81  FEFCREIRAGSDVPILMLTARDTELDEVKALELGVDDFMTKPFSVAVLKARVKRLVLRRN 140

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               ++ +  R +    RVF        +GE   L + E ++L + + NR + ++K QI 
Sbjct: 141 GGTVIQSNGIRVDVKECRVFR-------EGEEVVLSKVEYKLLLFFLENRNQVLSKEQIL 193

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++      V+EN V  +I +LR K+
Sbjct: 194 ENVWDSAGRFVDENTVSVNIRRLRAKV 220


>gi|297154252|gb|ADI03964.1| two component system transcriptional regulator PhoP [Streptomyces
           bingchenggensis BCW-1]
          Length = 249

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 20/173 (11%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +RA   + P++ ++    +   +    +G DD V KP    E+L R+ AI RR  
Sbjct: 71  EVTRSLRAVGVRTPVLFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRTG 130

Query: 120 -----KVSNNRAETGPIRVFS---DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVA 169
                ++  + AE   +R      D R  EV   G+  PL   E ++L +LM N  + ++
Sbjct: 131 HDVPYEMGEDEAEV--LRYADLELDERAHEVHRAGQYIPLSPTEFKLLAFLMENPNRVLS 188

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           K+QI   ++G +D + +  +VE+++  LR+K+ +    DP  + ++R +GY +
Sbjct: 189 KSQILDRVWG-YDFSGDGRIVETYVRYLRRKIDH---LDPPLIHTQRGVGYCL 237


>gi|229838247|ref|ZP_04458406.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229694613|gb|EEO84660.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 209

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 18/158 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I +    + +  +   D+G DD ++KP    E+LARV    RR    +  +
Sbjct: 51  LRQWSAIPIIVLFARNNEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGAS 107

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  P+  F+D       R     GE   L   E R+L  L+AN GK + + Q+ + ++G 
Sbjct: 108 QESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLTALLANAGKVITQRQLLNQVWG- 166

Query: 181 FDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216
                  N VE SH  ++    LR KL  DP   K  L
Sbjct: 167 ------PNYVEHSHYLRIYMGHLRQKLEADPTRPKHLL 198


>gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 223

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+     G I++    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIGAGEIKICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222


>gi|227891876|ref|ZP_04009681.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299823|ref|ZP_07206059.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|227866339|gb|EEJ73760.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300852576|gb|EFK80224.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 229

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  SQ+P++ +S        +     G DD V KP +  E++ARV ++ RR +
Sbjct: 61  MEVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAE 120

Query: 121 --VSNN---RAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             V NN   + E GP+ +  D  + + ++G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 HNVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+ +   G   + +   +GY I+
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227


>gi|217968993|ref|YP_002354227.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217506320|gb|ACK53331.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R IR   Q +P+I I+   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELVRRIRKRGQRMPVIVITARDALDDRIYGLDLGADDYLVKPFELAELSARMRAVQRRGG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  R   G + +  DGR  E+ G    L  RE  +LE L+   G+ V +  +     G 
Sbjct: 121 GAGARLAFGALALDLDGRLAELDGAPMTLSGREWEVLEALVRADGRTVTRENLQGDGSG- 179

Query: 181 FDEAVEENVVESHISKLRKKL 201
                  N +E  IS+LR ++
Sbjct: 180 -------NALEVCISRLRPRV 193


>gi|167622073|ref|YP_001672367.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352095|gb|ABZ74708.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R 
Sbjct: 60  LKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRG 119

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +      GP+ +    R   + G+   L  +E ++L+YLM +  + +++T +F A+
Sbjct: 120 ESLPTITDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLLFEAV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   FD     NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 180 WDYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|165976486|ref|YP_001652079.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|307245974|ref|ZP_07528056.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307249167|ref|ZP_07531172.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250316|ref|ZP_07532266.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252700|ref|ZP_07534591.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254952|ref|ZP_07536771.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257108|ref|ZP_07538881.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259390|ref|ZP_07541115.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261545|ref|ZP_07543213.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263734|ref|ZP_07545340.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|165876587|gb|ABY69635.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|306852909|gb|EFM85132.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306854337|gb|EFM86535.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857643|gb|EFM89749.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859732|gb|EFM91754.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862070|gb|EFM94045.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864379|gb|EFM96289.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866326|gb|EFM98189.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868668|gb|EFN00477.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870855|gb|EFN02593.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 238

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 27/229 (11%)

Query: 3   VLIDDRALVKDGY----------IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           +LI+D  L+ DG           +  F D  +  E   S E++           + +   
Sbjct: 21  LLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFEALFSTEYD-----------AVVLDL 69

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
            + K + +  L    + +  +P++ ++   +L   +  F+SG DD + KP    E++ R+
Sbjct: 70  TLPKMDGLAILKNWRKENLDIPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRL 129

Query: 113 AA-IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A I RR K S+     G + + S      +  +   L  +E ++L    +N+ + + ++
Sbjct: 130 QALIRRRYKQSSTEITLGDLTIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRS 189

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I   +Y  +D  V  N +E +I  LRK    KLG + + +   +GY I
Sbjct: 190 AIEEKLYS-WDNDVSSNAMEVYIHNLRK----KLGKEWIKTVHGIGYKI 233


>gi|159035749|ref|YP_001535002.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914584|gb|ABV96011.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 20/184 (10%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDY 81
           G +L+G   L       +S + DV  ++  L    G  VL L   IRA S VP++  +  
Sbjct: 29  GTALDGLREL-------ASRQSDVVILDLHLPDLDGATVLSL---IRADSAVPVVVATAC 78

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDG 137
            +    +    +G DD V KP    ++ AR+AA+ RR      +A T    G + + ++ 
Sbjct: 79  DTESEIIRLLRAGADDYVVKPYSVEQLEARIAAVLRR---GAGQAATVLTIGGLHLDAEA 135

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R   + G    L R E  +L YL    GK V + Q+   ++    E      V+ H++ L
Sbjct: 136 RIASLDGVRLQLSRLEFDLLTYLAQRAGKVVTRRQLLDHVW--RSEGRSLETVDVHVTWL 193

Query: 198 RKKL 201
           R+KL
Sbjct: 194 RRKL 197


>gi|94499218|ref|ZP_01305756.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Oceanobacter sp. RED65]
 gi|94428850|gb|EAT13822.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Oceanobacter sp. RED65]
          Length = 243

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 18/176 (10%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L + R++R   + P++ ++        +   + G DD + KP+  R +LAR+
Sbjct: 59  LMLPGEDGLSVCRLVRPSYKGPILMLTARDDDLDQVLGLEMGADDYLTKPVRPRVLLARI 118

Query: 113 AAIYRRLK-------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
            A+ RRLK              S  R     + V +  R+  +  +   L   E  +L  
Sbjct: 119 RALLRRLKDNPSVAGQNVDGEESQTRVTFANLVVDNSMREAWLNDDPIELTSAEFDLLWL 178

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           L +N G+ +++ +IF+A+ G+  +  ++  ++  +S++R     K+G DPV+ KR 
Sbjct: 179 LSSNAGRVLSREEIFTALRGIEYDG-QDRSIDVRVSRIRP----KIGDDPVNPKRI 229


>gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 235

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 9/151 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + +RA   +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQA 121

Query: 119 -LKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            LK      +N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 TLKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 211


>gi|89889297|ref|ZP_01200808.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
 gi|89517570|gb|EAS20226.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
          Length = 238

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 77/154 (50%), Gaps = 9/154 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R     P+I ++        +   + G DD + KP   RE+ AR  A+ RR  
Sbjct: 67  VEVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSD 126

Query: 121 VSN---NRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +N   N ++T     G ++V  + R   ++G+   L  +E  +L  L    G+  ++++
Sbjct: 127 AANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSE 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +   I+G ++ +  E+ V SHI++LR K+   +G
Sbjct: 187 LLDVIWG-YNFSGYEHTVNSHINRLRAKIEPDMG 219


>gi|296534444|ref|ZP_06896881.1| transcriptional activator protein CzcR [Roseomonas cervicalis ATCC
           49957]
 gi|296265229|gb|EFH11417.1| transcriptional activator protein CzcR [Roseomonas cervicalis ATCC
           49957]
          Length = 258

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           ++P++ I++  S++      + G DDV+ +P+    ++AR+ AI RR L  ++++   G 
Sbjct: 72  RMPVVIITNPISVEDEQTALNIGADDVLLRPVRAPVLIARMQAILRRGLGHTSSQLTCGN 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    R   V G    +  RE  +LE LM  RG  + K Q  S  YG+ D   ++ ++
Sbjct: 132 VVLDQARRTVSVDGRHVRITCREFDVLEMLMLRRGVLLTKEQFMSRAYGVED-GPDQRIL 190

Query: 191 ESHISKLRKKL 201
           +  + KLR+KL
Sbjct: 191 DVFVCKLRRKL 201


>gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 243

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+       
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDKNGASG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|256017749|ref|ZP_05431614.1| DNA-binding transcriptional regulator BaeR [Shigella sp. D9]
 gi|332278767|ref|ZP_08391180.1| DNA-binding response regulator in two-component system response
           regulatory system with BaeS [Shigella sp. D9]
 gi|332101119|gb|EGJ04465.1| DNA-binding response regulator in two-component system response
           regulatory system with BaeS [Shigella sp. D9]
          Length = 240

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGIDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I RR K    +    AE+ P+ +  +GR     +G++  L   E R+L+ L    GK 
Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  + + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|284033660|ref|YP_003383591.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283812953|gb|ADB34792.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 228

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 14/186 (7%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIG 77
             +L    +  SSA E +S +     G  + VL           EL R++R  SQVP+I 
Sbjct: 18  LRALTERGYATSSAGEGLSGLSELTHGSPDLVLLDLGLPDIEGGELLRMLRVVSQVPVIV 77

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFS 135
           ++     Q  +D  D G DD + KP    ++ AR+ A+ RR  V +       G + +  
Sbjct: 78  VTARDDEQQMVDMLDGGADDYLVKPFGPGQLDARIRAVLRRSGVDHRPGVLTVGALMIDP 137

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
             R   + G+   L  RE  +L YL    G+ V + Q+   ++ L     E+  V+ H+S
Sbjct: 138 AARSARLDGDELELAPREFELLRYLAERAGEVVTRRQLLVEVWQLAYGGAEKT-VDVHLS 196

Query: 196 KLRKKL 201
            LR+KL
Sbjct: 197 WLRRKL 202


>gi|222081273|ref|YP_002540636.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725952|gb|ACM29041.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 241

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 24/232 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEA-FLIGKGEKV 60
           +++DD   ++      F D+G ++    N LE    LQ   +E+  AI   +++  G+  
Sbjct: 12  LVVDDDPRIRQMLTRYFEDEGYAVSTASNGLEMRACLQ---QENFDAILLDWVLPGGKDG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L R IRA S VP+I ++    +   +   + G DD + KP H RE+ AR+ +I RR +
Sbjct: 69  LDLAREIRAQSDVPIIMLTGRDDVVDRIVGIEVGADDYIAKPFHLREVHARLKSILRRRQ 128

Query: 121 VSNNRAETGPIRV-------FSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +    +  P  V          G+      +G    L   E  IL     + G+ +++ 
Sbjct: 129 PAIRSPDKNPDDVIRFEGWQLDTGKRQLLAAEGHEIELTTGEFDILVVFARHAGRVLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            +     G   EA +   +++ I++LRKK+      DP     + S R +GY
Sbjct: 189 LLMDLTRGRNLEAFDRT-IDAQIARLRKKIET----DPARPQLIKSIRGVGY 235


>gi|187925269|ref|YP_001896911.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716463|gb|ACD17687.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 260

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSTLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR   V  +V  L  RE  +LE L+   G+ V+K Q
Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+    G   + + R LGY ++
Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 219


>gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  + G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSVLQVGGVTIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|167760992|ref|ZP_02433119.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704]
 gi|167661371|gb|EDS05501.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704]
          Length = 235

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 12/153 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR    +P++ ++        L  F +G DD ++KP    E++ARV A  R+ + 
Sbjct: 64  EICKEIRDKLDIPILMVTARTESVDKLRGFGAGADDYISKPFDPAELVARVNANLRQYER 123

Query: 122 SN----NRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           S      ++E  P       +R+ ++G       +    P RE  +L++L  N     +K
Sbjct: 124 SRFGAAKKSEKNPDEIVIGDLRILTEGWKVYKGEKEIRFPNREFELLQFLAMNPNIVFSK 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            Q+F  I+G +D   +   V  HI+++R+K+ +
Sbjct: 184 EQLFEKIWG-YDYVGDSATVMVHINRIREKIED 215


>gi|167748073|ref|ZP_02420200.1| hypothetical protein ANACAC_02817 [Anaerostipes caccae DSM 14662]
 gi|167652065|gb|EDR96194.1| hypothetical protein ANACAC_02817 [Anaerostipes caccae DSM 14662]
          Length = 223

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 5/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           + R +R  S VP+I ++   S    L   + G DD ++KP + + ++AR++++ +R K V
Sbjct: 65  ICRAVREKSDVPIIVVTSRDSEMDELMSMNLGADDFISKPYNTQILVARISSLLKRTKHV 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   T    + +        G E   L + E +IL  L+ ++ + V++  +   ++  
Sbjct: 125 KEDWQMTHKGLLINLSNSTACHGEEQIELSKNEVKILSVLVKHKEEIVSRDNLMEELWQ- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            +E V++N +  +I++LRKKL + +G  D + +KR  GY
Sbjct: 184 SNEFVDDNTLTVNINRLRKKL-DSIGLADYIVTKRGQGY 221


>gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  + G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|163801134|ref|ZP_02195034.1| DNA-binding response regulator [Vibrio sp. AND4]
 gi|159175483|gb|EDP60280.1| DNA-binding response regulator [Vibrio sp. AND4]
          Length = 219

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 30/221 (13%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L  +G++     DG+  +       EEW            +A ++  G   L+   ++R
Sbjct: 19  TLENNGWVPELSQDGI--DALYRATSEEW------------DAIVLDLGLPKLDGLTVLR 64

Query: 69  A----HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
                +   P++ +S   +L   ++  ++G DD + KP    E+ AR+ A  RR   S N
Sbjct: 65  GIRDENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLRR--ASGN 122

Query: 125 RAETGPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
            +    I   S D R  +V  QG+   L   E +++ Y + N  K +++T++   +Y   
Sbjct: 123 PSPVMQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFVHNPEKVISRTELVEHVYKQD 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + N +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 183 FDR--DSNTIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis]
          Length = 239

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 15/141 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----------GPIRVFSDGRDPEV 142
           G DD + KP   RE+ ARV AI RR +++   +E            G +++  D  +   
Sbjct: 95  GADDYMTKPFSPREVNARVKAILRRSEMAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYF 154

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +     L  +E  +L YL  ++G+ + +  + SA++  +D A +  +V+ HIS LR K+ 
Sbjct: 155 KESQLELTPKEFELLLYLGRHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIE 213

Query: 203 NKLGFDPVDSK--RFLGYSID 221
           N     P+  K  R LGY ++
Sbjct: 214 NNTK-KPIYIKTIRGLGYKLE 233


>gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 248

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 22/242 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDD-------GVSL--EGFN---SLEFEEWLQSSAREDVSA 48
           M ++  +R  + +  I +  DD        V L  EG+N   + + ++ LQ  +  +V  
Sbjct: 7   MLMICKERNYIMNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDDALQMISTYEVDL 66

Query: 49  IEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
           +   ++      LE+ + +R ++ VP++ +S        +    +G DD + KP +  E+
Sbjct: 67  MILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLEL 126

Query: 109 LARVAAIYRRLKVSNN---RAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYL 160
           +ARV A+ RR    N    + E G IR+ S          +V GE   L   E  IL  L
Sbjct: 127 VARVKALLRRSSFQNASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLL 186

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            +N G+  +  +IF  ++   D       V  HIS LR KL   + G   + +   +GY 
Sbjct: 187 ASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYK 245

Query: 220 ID 221
           I+
Sbjct: 246 IE 247


>gi|186473343|ref|YP_001860685.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195675|gb|ACC73639.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 226

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 7/141 (4%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           ++VP++ +S    +   +    +G DD V KP    E++AR+ A+ RR + +N       
Sbjct: 72  NKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRSQDNNFETTLKV 131

Query: 131 IRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187
             +  D   R     G+   L  RE ++LEYLM +  + V +T +   I+   FD   + 
Sbjct: 132 ADLCIDLLSRKVMRAGKAIVLKPREFKLLEYLMRHAEQVVTRTMLLENIWEYNFDP--QT 189

Query: 188 NVVESHISKLRKKLRNKLGFD 208
           NV++ H+SKLR+K+   +GF+
Sbjct: 190 NVIDVHVSKLRQKI--DIGFE 208


>gi|320528752|ref|ZP_08029904.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320130962|gb|EFW23540.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 221

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           + R IR  S VP+I ++        +   + G DD + KP +   ++A +A + +R K +
Sbjct: 63  ICREIRKQSSVPIIILTSRSGEMDEIMGLEIGADDFIAKPFNPGVLIAHIAVVLKRSKGM 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   T         +     GE    L R ER+IL  LM N  K V++ ++   ++  
Sbjct: 123 TEDDLITCRGLKLDIAKSFVSYGERSVELTRNERQILMLLMRNSEKIVSREKLMDTLWQ- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DE V +N +  +I++LRKKL      + V +KR +GY
Sbjct: 182 SDEFVSDNTLTMNINRLRKKLDEIGAKEFVQTKRGMGY 219


>gi|306832962|ref|ZP_07466094.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304424861|gb|EFM27995.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NR 125
           IR  S +P++ ++        +     G DD + KP   +E++ARV ++ RR    N   
Sbjct: 69  IRETSNIPVLMLTAKSGEDDKVFGLRLGADDYLTKPFSIKELMARVNSLIRRYTTLNPTF 128

Query: 126 AETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           AE   I     ++    R   V      L  +E  +L +L +N+G+   K QI++ ++  
Sbjct: 129 AEEDCITLKGMKIDKVNRTVLVNNISVELTSKEFDLLTFLASNKGRIFTKKQIYTQVWK- 187

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D A ++N + S ISKLRKK+
Sbjct: 188 DDYAFDDNNIMSFISKLRKKI 208


>gi|303235216|ref|ZP_07321835.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302493703|gb|EFL53490.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 218

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 78/161 (48%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR  S +P I ++ +   +  ++ F S  D  + KP     +  R+ ++ ++  
Sbjct: 60  LDVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVLKVRIESLIKKHY 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N         V       ++ G+   +  +E  IL+Y++ N G+ + + QI  +++  
Sbjct: 120 GNNETFNYKNTEVNFASYTAKLNGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKE 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 180 TDEIPFDRVIDVYIKELRKKLE----LDCIVTIRNVGYKLE 216


>gi|295697225|ref|YP_003590463.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412827|gb|ADG07319.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 231

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPI 131
           P++ ++   SL   L  FD G DD + KP    E++AR+ A+ +R    +   R   G  
Sbjct: 75  PVLFLTARDSLADKLTGFDRGGDDYLVKPFAFAELVARIRALLKRANRPLQPERLTVGEW 134

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +        + G+   L  +E ++LE LM      ++K QI   ++G   +AV  NVVE
Sbjct: 135 ELDPKTHTFSIAGQEVELTSKEFQLLELLMQYPRYTLSKIQILEQVWGFAPDAV-TNVVE 193

Query: 192 SHISKLRKKL 201
             I +LR+K+
Sbjct: 194 VTIGRLRQKI 203


>gi|226954429|ref|ZP_03824893.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|294651444|ref|ZP_06728758.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226834778|gb|EEH67161.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|292822690|gb|EFF81579.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 230

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S +P+I ++        +   + G DD + KP   +E++ARV A+ RRL+
Sbjct: 64  LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLE 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179
                 +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I   
Sbjct: 124 RKAEPEQNDLFRIDKAQQRIWYQQKALTLTPTEFRLLELFLEHLGQVYSRAQLLDHINPD 183

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            FD  V + V++SHI  LR+K+
Sbjct: 184 SFD--VADRVIDSHIKNLRRKI 203


>gi|145297137|ref|YP_001139978.1| two-component system potassium response regulator KdpE [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142849909|gb|ABO88230.1| two-component system potassium response regulator KdpE [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 227

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++L+    IR H Q P++ +S   S Q  +   D+  +D ++KP    E++AR+  
Sbjct: 58  GDGIQILQ---AIREHHQNPVLVLSARDSEQEKVRLLDASANDYMSKPFGIGEMMARIRV 114

Query: 115 IYR-RLKVSNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + R R  VS+      P   + + +      +  E  PL R+E  +L+ L+ + GK V +
Sbjct: 115 LLRQRAGVSSGERRHFPQCGLTLDASSHKVSLHDEEIPLSRKEFALLQALVCHPGKLVMQ 174

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           TQ+ + I+G   +  + + +   I+ LRKKL
Sbjct: 175 TQLLNDIWGPSHKE-DTHYLRIVIASLRKKL 204


>gi|113868407|ref|YP_726896.1| response regulator [Ralstonia eutropha H16]
 gi|113527183|emb|CAJ93528.1| response regulator, phosphate regulon transcriptional regulator
           PhoB, OmpR-family [Ralstonia eutropha H16]
          Length = 235

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
           Q+P+I ++     Q  +   ++G DD V KP   +E+LAR+ A+ RR         + ++
Sbjct: 76  QIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--L 180
             R +    RV        ++ E+ P    E R+L +LM +  +  +++Q+   ++G  +
Sbjct: 136 GLRLDPATHRVTGQDDSGAIKLELGPT---EFRLLHFLMTHPERVHSRSQLLDQVWGDHV 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F   VEE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 193 F---VEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229


>gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 236

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 11/170 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R   ++P+I ++   S    +   + G DD V KP  +RE++ARV A  RR +
Sbjct: 62  MEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHQ 121

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       N    G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 122 QIAAKAGEEEETNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 HLLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 230


>gi|134291089|ref|YP_001114858.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134278|gb|ABO58603.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 226

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 7/143 (4%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRA 126
           A S+VP++ +S    +   +    +G DD V KP    E++AR+ A+ RR + +  +   
Sbjct: 70  AGSKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRSQDNGFDTAL 129

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           +   + +    R     G+   L  RE ++LEYLM +  + V +T +   I+   FD   
Sbjct: 130 KLADLSIDLLSRKVTRAGKPIVLKPREFKLLEYLMRHAEQVVTRTMLLENIWEYHFDP-- 187

Query: 186 EENVVESHISKLRKKLRNKLGFD 208
           + NV++ H+SKLR+K+    GFD
Sbjct: 188 QTNVIDVHVSKLRQKIDT--GFD 208


>gi|125974602|ref|YP_001038512.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256004035|ref|ZP_05429020.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281419128|ref|ZP_06250145.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714827|gb|ABN53319.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255991958|gb|EEU02055.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407277|gb|EFB37538.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941721|gb|ADU75755.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 233

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 1/159 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R I+  S +P++ ++    ++  L     G D+ + KP     +LARVA + +R + 
Sbjct: 62  QICREIKQKSAIPVLVLTSRDQMKDELHALKLGADEYLTKPCRKERLLARVANVLKRYEG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  E     +        +  +   LP+ + ++LE  +      V K  +  AI+G  
Sbjct: 122 RANLLEGADFLLDRQTYTLYIHNQSVVLPKNQGKLLEVFLMRGDDIVTKDDLCLAIWG-T 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E ++EN ++ ++++L+K + +      + S R +GY +
Sbjct: 181 TEFIDENALQVNLTRLKKTMTSLKMRQKIVSVRGVGYKL 219


>gi|289671038|ref|ZP_06492113.1| two-component system response regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 264

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 31/195 (15%)

Query: 51  AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           A L G+G +++            E+ R IR  S VP+I ++        +   D+G +D 
Sbjct: 74  ALLAGQGAELVVLDIGLPDRDGHEVLREIRQWSSVPVIMLTVRAGETEKVAALDAGANDY 133

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150
           V KP   +E++AR+ ++ R+    +   E+    VF DG        R+  + GE  PL 
Sbjct: 134 VTKPFGVQELMARIRSLLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLNGEAVPLS 189

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG---- 206
           R+E  +L  L+ + G+ V + Q+   ++G   E  + + +   + KLR+KL++       
Sbjct: 190 RKEYALLALLLKHAGRVVTQPQLLREVWGPTHED-DTHYLRILVGKLRQKLQDAAAAPHY 248

Query: 207 --FDPVDSKRFLGYS 219
              +P    RF+G +
Sbjct: 249 IVTEPGVGLRFIGVT 263


>gi|229527792|ref|ZP_04417183.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229334154|gb|EEN99639.1| transcriptional regulator [Vibrio cholerae 12129(1)]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L L + IRA  +QV ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR 
Sbjct: 60  LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   L+ ++       +RV+   +  E       L  +E  ILE  +   G   ++
Sbjct: 120 IQTHTSNKLRFADLELCLSTMRVYRAEQPIE-------LTAKEISILELFLRKPGHIFSR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +I + ++G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 173 ERILANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|254520662|ref|ZP_05132718.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226914411|gb|EEH99612.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 222

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 10/160 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           IR+ S+VP+I I+   +    L     G DD + KP + + +LAR+ A+ +R   +++  
Sbjct: 67  IRSFSKVPIIFITSRNTNIDELMAITLGGDDYITKPYNTQILLARINALIKRAYPNDSNL 126

Query: 126 --AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY--GLF 181
              E   +++       E +G    L + E +IL YL+ N+ K V++ +I   ++   +F
Sbjct: 127 DIIEYNGLKLNILSSTIEYKGNSKELTKNEMKILYYLLINKEKIVSRVEIMEYLWDSSMF 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              V +N +  +I+++R K+  ++G  D + +KR  GY I
Sbjct: 187 ---VNDNTLTVNITRIRNKIE-EIGLKDFIKTKRGQGYII 222


>gi|254304225|ref|ZP_04971583.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324417|gb|EDK89667.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA+ ++  ++ ++    +   +   D G DD + KP   RE++AR+ A+ RR K
Sbjct: 61  EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRR-K 119

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N  N  +   + V    +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++
Sbjct: 120 YGNISNELQIDDLIVDISKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               E  E N+++  I  +RKK+        + +KR LGY
Sbjct: 180 DYAYEG-ESNIIDVLIKNIRKKIDIGDSKPIIHTKRGLGY 218


>gi|111025331|ref|YP_707751.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110824310|gb|ABG99593.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 230

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 6/203 (2%)

Query: 23  GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGI 78
           G+ LEGF    +   E+ L  +  +    I   ++  G    E+ R +RA     P++ +
Sbjct: 19  GLELEGFVVVTAATGEDGLWRATEDTFDVIVLDIMLPGMNGYEIVRALRAKQIWTPILML 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138
           +         D FD G DD + KP     ++AR+ A+ RR   +     T         R
Sbjct: 79  TAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRGAPARPVLLTAGDLSLDPAR 138

Query: 139 DPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
              ++G E   L  RE  +LE+L+ +    + K  I   ++    +  +EN+VE +I  L
Sbjct: 139 RRVMRGNEELALTPREFGVLEFLLRHPDTALTKGVILRNVWDAHYDG-DENIVEVYIGYL 197

Query: 198 RKKLRNKLGFDPVDSKRFLGYSI 220
           R+K+    G   +D+ R +GY +
Sbjct: 198 RRKIDAPFGAHTIDTVRGVGYRL 220


>gi|56540577|gb|AAV92742.1| PmrA [Escherichia coli]
          Length = 222

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 11/205 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E  QS      S +   L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ 
Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           IY  +D     N +E HI  LR K+
Sbjct: 178 IYN-WDNEPSTNTLEVHIHNLRDKV 201


>gi|49474784|ref|YP_032826.1| two-component response regulator [Bartonella quintana str.
           Toulouse]
 gi|49240288|emb|CAF26763.1| Two-component response regulator [Bartonella quintana str.
           Toulouse]
          Length = 227

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 3/130 (2%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P+I I++Y +   T+   + G +D V KP     +LAR+ A  R+ + + +        +
Sbjct: 78  PIIMITNYDTDCDTILDLEEGANDYVTKPFRFAVLLARIRAQLRQYEQNEDAVFCIGPYI 137

Query: 134 FSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           F  G+   +  Q     L  +E  IL+YL  N  K V +  +   I+G ++E +  + +E
Sbjct: 138 FKPGQKLLIDQQDNKIRLTEKEAAILKYLSCNNDKIVNRETLLEQIWG-YNENIVTHTLE 196

Query: 192 SHISKLRKKL 201
           +HI +LR+K+
Sbjct: 197 THIYRLRQKI 206


>gi|15612851|ref|NP_241154.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10172901|dbj|BAB04007.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 78/159 (49%), Gaps = 1/159 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +++    P++ ++    LQ  L     G DD + KP +   +LAR+  + RR K 
Sbjct: 62  DICKTLKSKGIGPILILTSRDKLQDELHGLHLGADDYLIKPCNRDRLLARIQNLLRRFKG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  + G   +  +        E   L   E ++L  L+ N+   V+K+ +   ++G  
Sbjct: 122 QPDLIDGGKFSLDPNTFTLYKGSESLRLSENEGKLLLALVENKPGIVSKSTLSERLWG-T 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           DE ++EN ++ ++++LRK LR     D +++ R  GY +
Sbjct: 181 DEYIDENALQVNLTRLRKTLRPLNLEDEIETIRGQGYRL 219


>gi|148244000|ref|YP_001220238.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146400563|gb|ABQ29096.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
          Length = 231

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 6/156 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VS 122
           +R  S VP+I +S        +  FD+G +D V KP    E+LAR+   +R +     V 
Sbjct: 75  LREFSDVPVIVLSARDQEAQKIAAFDAGANDYVEKPFGLGELLARIRNAFRLIATGQGVP 134

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E   +R+    R   + G      + E RIL  L  +RGK V    I  A +G   
Sbjct: 135 TEAIEIDGLRIDEAARSVSLDGAEIHFTKTEFRILAALARHRGKLVTHDDILQAGWGDLQ 194

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E  +   V  +I  +R+KL  K   + + +K  LGY
Sbjct: 195 E-YDRAYVRIYIRSIRQKL-GKFADNHLKTKSGLGY 228


>gi|119715849|ref|YP_922814.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536510|gb|ABL81127.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 2/154 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           +A   VP++ ++         D  D G DD + KP     ++AR+ A+ RR         
Sbjct: 68  KAGVWVPILMLTAKDGEYDEADALDLGADDYLTKPFSFVVLVARLRALVRRGAPKRPSVL 127

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           T G + +    R     G    L  RE  +L +LM + G+ ++KT I  +++ L  +  +
Sbjct: 128 TVGDLTLDPATRMVGRGGTEIALTPREFALLHFLMRHPGEVLSKTAIVQSVWDLNYDG-D 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ENVVE ++  LR+K+    G   + + R  GY +
Sbjct: 187 ENVVEVYVGYLRRKIDQPFGTTTIQTMRGAGYRL 220


>gi|332307159|ref|YP_004435010.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174488|gb|AEE23742.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 231

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 19/194 (9%)

Query: 22  DGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLI 76
           D +SLEGF +    +  ++ A       D   ++  L GK    L + + +R  S VP+I
Sbjct: 22  DFLSLEGFLTHVVHDGDEAEAAIKQVNPDCVILDLMLPGKDG--LSICKDVRKFSHVPII 79

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP------ 130
            ++        L     G DD V KP   RE++ARV A+ RR  +     +T P      
Sbjct: 80  MLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQALLRRAALGAPAEKTAPNILTFK 139

Query: 131 -IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA--VEE 187
            IR+ ++  +  + G +  L   E R+L+ L+   G   ++  +    Y   ++A  V  
Sbjct: 140 HIRIDTERFECTINGSIIELTPVEFRLLKTLLGKPGTVFSREILMQRCY---EDARIVSN 196

Query: 188 NVVESHISKLRKKL 201
             ++SH+  LR K+
Sbjct: 197 RTIDSHMKNLRNKI 210


>gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942]
 gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942]
          Length = 236

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR  
Sbjct: 63  VEVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQL 122

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + S+N    G + +F D      + E   L  RE  +L YL  + G+ + +  
Sbjct: 123 TTAPAEEESSSNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+  N    + + ++R +GY +
Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|312198357|ref|YP_004018418.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229693|gb|ADP82548.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 235

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 13/148 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R++R  + VP++  +      T +   +SG DD + KP   + + ARVAA+ RR +   +
Sbjct: 65  RMLRGVTDVPVVVATARDDDATIVRLLNSGADDYLVKPFTPQHLNARVAAVLRRARPGQH 124

Query: 125 RAETG------PIRVFSDG-----RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             + G      P+RV         R   + G    L RRE  +L YL A  G  V + ++
Sbjct: 125 AGDLGEAAVSPPLRVGELAVDIPRRAATLAGARLDLTRREFDLLAYLAARPGLVVGRGEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            +A++        +  ++ H+S LR+KL
Sbjct: 185 LTAVW--HQAYGGDQTIDVHLSWLRRKL 210


>gi|255526947|ref|ZP_05393841.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185076|ref|ZP_06853486.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509347|gb|EET85693.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049910|gb|EFG89334.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E   EL + I A+ ++P+I ++    +   +   + G DD + KP H +E+L RV    R
Sbjct: 59  ESGFELCKFINANYKIPIIMLTARNDITDKVLGLELGADDYITKPFHIKEVLVRVKIALR 118

Query: 118 RLKVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R+    N             I++  + R     G+   L  +E  +L + + N+ +   +
Sbjct: 119 RVDKYRNLDNYNDFINLNDSIKIKLENRMVIKDGKEIKLKPKEYDLLVFFIKNKNRVFTR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +I   ++G+ D   E   V+ H+ +LR KL    G   +++   +GY
Sbjct: 179 EEILDKVWGI-DYCGEIRTVDIHVRRLRAKLNLDSGQSFIETVFGVGY 225


>gi|237718181|ref|ZP_04548662.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|260174609|ref|ZP_05761021.1| two-component system response regulator [Bacteroides sp. D2]
 gi|293371072|ref|ZP_06617612.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|315922873|ref|ZP_07919113.1| two-component system response regulator [Bacteroides sp. D2]
 gi|229452602|gb|EEO58393.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|292633841|gb|EFF52390.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|313696748|gb|EFS33583.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 8/166 (4%)

Query: 61  LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           LEL R+ R     Q+P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR
Sbjct: 61  LELCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 120

Query: 119 LK-VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K V +N      + +  + R  + +G++   L  +E R+LEY M ++G  +++  +   
Sbjct: 121 NKEVPSNLLTCDNLVLDCNTRKAK-RGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKD 179

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   FD     N+V+ +++ LR K+        + +   LGY ++
Sbjct: 180 VWDKNFD--TNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 223


>gi|229099550|ref|ZP_04230478.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|229118615|ref|ZP_04247967.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228664807|gb|EEL20297.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228683846|gb|EEL37796.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
          Length = 220

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 57  EICRQIRLVKTTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDY 116

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  N       + +F D     V+  GE   L +RE  +L +L+ N+   +++  + + +
Sbjct: 117 IQQNEMNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 176

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G ++  V  NVV+ +I  +RKKL+
Sbjct: 177 WG-YNVVVNPNVVDLYIGYVRKKLK 200


>gi|251794486|ref|YP_003009217.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542112|gb|ACS99130.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 240

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 12/148 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           IR  S VP++ +S    +   +    +G DD + KP    E+ ARV A+ RR +      
Sbjct: 67  IRERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQFSATEA 126

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     A+  PI++ S+ R   V+G++      E  +++  +++ GK  ++ ++ +
Sbjct: 127 EAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFSREELIN 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            I G FD  V +  ++ HI  LRKK+  
Sbjct: 187 TIRG-FDSFVTDRAIDVHIVNLRKKIEQ 213


>gi|218899996|ref|YP_002448407.1| regulatory protein VanR [Bacillus cereus G9842]
 gi|218544954|gb|ACK97348.1| regulatory protein VanR [Bacillus cereus G9842]
          Length = 233

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 13/186 (6%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+  L+    EE L+   + DV  I   ++      + +   +R  +++P+I +S    
Sbjct: 26  EGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHMCMKVREIAEMPIIMLSAKTQ 85

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS------NNRAETGPIRVFSD 136
               +    +G DD V KP +  E++AR+ +  RR +K+S       N  E G ++V   
Sbjct: 86  DMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKMSGTSVQDENEIEIGDMKVNIV 145

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHIS 195
            R   +  E   L  RE  +LE L+ N+G  +   QI+  ++   ++A + +N V  HI 
Sbjct: 146 TRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIYERVWK--EQAFQSDNTVMVHIR 203

Query: 196 KLRKKL 201
           K+R+K+
Sbjct: 204 KIREKI 209


>gi|146312332|ref|YP_001177406.1| DNA-binding transcriptional regulator BaeR [Enterobacter sp. 638]
 gi|145319208|gb|ABP61355.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 240

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 6/153 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K         AE+ P+ V         + ++  L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQVLDAES-PLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 181 SREQLLNQLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|91214972|ref|ZP_01251944.1| response regulator DrrA [Psychroflexus torquis ATCC 700755]
 gi|91186577|gb|EAS72948.1| response regulator DrrA [Psychroflexus torquis ATCC 700755]
          Length = 228

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 8/131 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNRAETGPIRVFSDGRDPEVQGEVF 147
           FD+G DD + KP+  + ++++V A+ RR K +    N  + G I +  D       G   
Sbjct: 98  FDAGADDYITKPVKPKVLMSKVKALLRRFKSNASEKNIYKIGGIVINRDEYKISSDGIEM 157

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            LPR+E  +L  L +   K   +  I + ++G  +  V    ++ HI    +KLR KLG 
Sbjct: 158 TLPRKEFELLSLLTSEPNKVFKRDDILNTVWG-NEVVVGGRTIDVHI----RKLREKLGD 212

Query: 208 DPVDSKRFLGY 218
           D   + + +GY
Sbjct: 213 DKFKTVKGVGY 223


>gi|66046441|ref|YP_236282.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257148|gb|AAY38244.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330972923|gb|EGH72989.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 222

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 24/227 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   + D  +A  G  G +++         +  +S   D+  ++  L G  G +V
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L+  R        P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 63  LQQWR--SKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+ +    + G   V  DG D ++    F       R+L Y M + G+ ++K+
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEF-------RLLRYFMLHPGQILSKS 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   +Y   +E  + NV+E H++ LR+    KLG   V+++R  GY
Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215


>gi|15601007|ref|NP_232637.1| transcriptional regulator [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121587109|ref|ZP_01676885.1| transcriptional regulator [Vibrio cholerae 2740-80]
 gi|121729896|ref|ZP_01682322.1| transcriptional regulator [Vibrio cholerae V52]
 gi|147672355|ref|YP_001215826.1| transcriptional regulator [Vibrio cholerae O395]
 gi|153215292|ref|ZP_01949936.1| transcriptional regulator [Vibrio cholerae 1587]
 gi|153802077|ref|ZP_01956663.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|153802458|ref|ZP_01957044.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|153820149|ref|ZP_01972816.1| transcriptional regulator [Vibrio cholerae NCTC 8457]
 gi|153822561|ref|ZP_01975228.1| transcriptional regulator [Vibrio cholerae B33]
 gi|153826711|ref|ZP_01979378.1| transcriptional regulator [Vibrio cholerae MZO-2]
 gi|227811861|ref|YP_002811871.1| transcriptional regulator [Vibrio cholerae M66-2]
 gi|229506603|ref|ZP_04396112.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229510601|ref|ZP_04400081.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229517268|ref|ZP_04406713.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229526139|ref|ZP_04415543.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229605078|ref|YP_002875782.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254225977|ref|ZP_04919578.1| transcriptional regulator [Vibrio cholerae V51]
 gi|254850562|ref|ZP_05239912.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255745957|ref|ZP_05419904.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262168256|ref|ZP_06035954.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|298500087|ref|ZP_07009893.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9657634|gb|AAF96150.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548645|gb|EAX58695.1| transcriptional regulator [Vibrio cholerae 2740-80]
 gi|121628363|gb|EAX60865.1| transcriptional regulator [Vibrio cholerae V52]
 gi|124114831|gb|EAY33651.1| transcriptional regulator [Vibrio cholerae 1587]
 gi|124122026|gb|EAY40769.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|124122376|gb|EAY41119.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|125621511|gb|EAZ49844.1| transcriptional regulator [Vibrio cholerae V51]
 gi|126509301|gb|EAZ71895.1| transcriptional regulator [Vibrio cholerae NCTC 8457]
 gi|126519921|gb|EAZ77144.1| transcriptional regulator [Vibrio cholerae B33]
 gi|146314738|gb|ABQ19278.1| transcriptional regulator [Vibrio cholerae O395]
 gi|149739498|gb|EDM53732.1| transcriptional regulator [Vibrio cholerae MZO-2]
 gi|227011003|gb|ACP07214.1| transcriptional regulator [Vibrio cholerae M66-2]
 gi|227014908|gb|ACP11117.1| transcriptional regulator [Vibrio cholerae O395]
 gi|229336297|gb|EEO01315.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229345304|gb|EEO10277.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229353046|gb|EEO17986.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229356954|gb|EEO21872.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229371564|gb|ACQ61986.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254846267|gb|EET24681.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255735711|gb|EET91109.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262023499|gb|EEY42202.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|297542068|gb|EFH78119.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|327485449|gb|AEA79855.1| transcriptional regulator [Vibrio cholerae LMA3894-4]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L L + IRA  +QV ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR 
Sbjct: 60  LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   L+ ++       +RV+   +  E       L  +E  ILE  +   G   ++
Sbjct: 120 IQTHTSNKLRFADLELCLSTMRVYRAEQPIE-------LTAKEISILELFLRKPGHIFSR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +I + ++G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 173 ERILANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|315635865|ref|ZP_07891127.1| two component response regulator [Arcobacter butzleri JV22]
 gi|315479844|gb|EFU70515.1| two component response regulator [Arcobacter butzleri JV22]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 98/217 (45%), Gaps = 19/217 (8%)

Query: 8   RALVKDGYIALF---GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLEL 63
           + L ++ YI  F   GD+G+ L   N+             D+  ++  L I  G +V + 
Sbjct: 21  KGLEEECYIVDFSTNGDEGLYLASINTY------------DLILLDIMLPIKDGIEVCKS 68

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R   ++ Q P+I ++   S++  +   D G +D + KP    E+LAR+    R    + 
Sbjct: 69  LR--SSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQLRITTTTQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            +     + +    +      +   L  +E  +LEYL+ N+ + +++T I  A+   F++
Sbjct: 127 TKLSIADLELDLLNKTASRANQNIVLTAKEFALLEYLIKNKNRVLSETTINEALSS-FED 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   N+V  +I +LR K+        + + R +G+ I
Sbjct: 186 SNISNIVNVYIYRLRNKIDKNFENKLIKTVRGIGFKI 222


>gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 240

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 15/141 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----------GPIRVFSDGRDPEV 142
           G DD + KP   RE+ ARV AI RR +++   +E            G +++  D  +   
Sbjct: 96  GADDYMTKPFSPREVNARVKAILRRSEMAAPSSEMKNDEIEGQIVIGDLKILPDHYEAYF 155

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +     L  +E  +L YL  ++G+ + +  + SA++  +D A +  +V+ HIS LR K+ 
Sbjct: 156 KENQLELTPKEFELLLYLGRHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIE 214

Query: 203 NKLGFDPVDSK--RFLGYSID 221
           N     P+  K  R LGY ++
Sbjct: 215 NNTK-KPIYIKTIRGLGYKLE 234


>gi|237801204|ref|ZP_04589665.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331024061|gb|EGI04118.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 227

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 7/159 (4%)

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVS 122
           +RA     P++ IS    +   +    +G DD + KP    E+ ARV  + RR   +  +
Sbjct: 67  LRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAA 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
               +   + +    R+    GE   L   E ++LE+LM N G+ + +  IF  ++G  F
Sbjct: 127 KTVLQVADLELNLITREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHF 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     N+++ HI +LRKK+        + + R  GY I
Sbjct: 187 DPGT--NLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|225414512|ref|ZP_03761701.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme
           DSM 15981]
 gi|225041976|gb|EEG52222.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme
           DSM 15981]
          Length = 243

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 7/144 (4%)

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121
           R +RA  + +P++ +S       TL   D G DD + KP +   + A++ A+ RR K   
Sbjct: 78  RSLRATGNDIPIVILSGRTEDFDTLYGLDIGADDYITKPFNPVVLGAKIKALIRRNKKAA 137

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    GP R  +   +     ++ PL  +E  +++  ++N G+   K Q++  ++G
Sbjct: 138 YNAHNFITAGPFRYSNMTLEFFKNEQLIPLSSKENVMMKLFISNVGRVFTKEQLYELVWG 197

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
             +  V+EN +  +IS LR K+ +
Sbjct: 198 --NSIVDENAIMVYISHLRNKIED 219


>gi|188533449|ref|YP_001907246.1| DNA-binding transcriptional regulator BaeR [Erwinia tasmaniensis
           Et1/99]
 gi|188028491|emb|CAO96353.1| Two-component system response regulator [Erwinia tasmaniensis
           Et1/99]
          Length = 235

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 2/150 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L + R +R+ S++P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 59  LMLPGMDGLSVCRELRSFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARV 118

Query: 113 AAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            AI +R +  + +     P++V           +   L   E R+L+ L    GK  ++ 
Sbjct: 119 KAILKRCQRGSQKTLPVSPLQVDEQRFQASWDDKPLDLTPAEFRLLKTLSQQPGKVFSRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 179 QLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 207


>gi|118477412|ref|YP_894563.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225863917|ref|YP_002749295.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|300117557|ref|ZP_07055344.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|118416637|gb|ABK85056.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225786611|gb|ACO26828.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|298725092|gb|EFI65747.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 254

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 97  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 156

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 157 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 215

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 216 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 251


>gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri]
 gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
          Length = 235

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 9/151 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + +RA   +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQA 121

Query: 119 -LKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            LK      +N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 TLKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 211


>gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  + G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|330957643|gb|EGH57903.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 229

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +  ++   NS E  E    S R D+  ++  +       +
Sbjct: 4   VLLVDDDRELTDMLSQYLTRERFNVTCTNSAEEGEVEALSGRHDIVVLDIMM--PRISGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IRA SQVP+I ++        +   + G DD V KP    E++AR+ AI RR++ 
Sbjct: 62  EVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRS 121

Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V  N A       G + ++   R+    G++  L   E  +LE L  + G+ V+K  +  
Sbjct: 122 VPLNEAVRDVIHAGELMLWPGKREARWHGQLLELTGNEFCLLEELARHAGQLVSKQNLSM 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
              G    A  +  ++ HIS +R KL  RN      + S R LGY +
Sbjct: 182 NALG-RPLARYDRSIDVHISSIRHKLGPRND-DRSWIQSVRNLGYML 226


>gi|330830132|ref|YP_004393084.1| Tricarboxylic transport regulatory protein [Aeromonas veronii B565]
 gi|328805268|gb|AEB50467.1| Tricarboxylic transport regulatory protein [Aeromonas veronii B565]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 11/150 (7%)

Query: 61  LELPRI--------IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           +E+P++        +R+  Q VP++ ++   +++  +   ++G DD + KP    E+ AR
Sbjct: 52  IEMPKLDGLAVLGRLRSRGQGVPVLLLTARGAVEERICGLNAGADDYLAKPFDLGELDAR 111

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + A+ RR +        G + +  DG        +   P RE  +L  LM   G+ VAK 
Sbjct: 112 LRALLRRSESGGAELRLGRLTLHPDGYFLLADARLALTP-RELALLTALMYRHGRPVAKG 170

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q+F  ++ L DE V  + ++ +I +LRKKL
Sbjct: 171 QLFEQVFNLDDE-VGLDSIDLYIHRLRKKL 199


>gi|299537509|ref|ZP_07050803.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
 gi|298727070|gb|EFI67651.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           + ++ +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R ++ +++  
Sbjct: 69  KMNTDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIGHSQTI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + G + +           +V  LP +E  +L  L    G+   + Q+   I+G+ D A +
Sbjct: 129 QLGQVTLDRQTYKVMRGKDVISLPLKEFELLYKLAETPGQVYTREQLIDQIWGI-DYAGD 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++ HI +LR++      F  +D+ R LGY ++
Sbjct: 188 NRTIDVHIKRLRERFNTITDFH-IDTIRGLGYRLE 221


>gi|319763169|ref|YP_004127106.1| phosphate regulon transcriptional regulatory protein phob
           [Alicycliphilus denitrificans BC]
 gi|330825232|ref|YP_004388535.1| two component transcriptional regulator PhoB [Alicycliphilus
           denitrificans K601]
 gi|317117730|gb|ADV00219.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alicycliphilus denitrificans BC]
 gi|329310604|gb|AEB85019.1| two component transcriptional regulator PhoB, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 233

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 12/171 (7%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L+L R  R+ ++   VP++ ++        +   D+G DD + KP   +E+LAR+ 
Sbjct: 60  GMSGLQLARKWRSAARTKGVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 114 AIYRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           A+ RR    +V+++ A  G + + +       QG+   L   E ++L YLM +  +  ++
Sbjct: 120 AVLRRRAPEQVADSVA-IGALSLDAATHRASFQGQPLKLGPTEFKLLHYLMKHAERVHSR 178

Query: 171 TQIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   I+G  D   +EE  V+ H+ +LR+ L        +++ R  GY +
Sbjct: 179 AQLLDKIWG--DHVYIEERTVDVHVKRLREALGEASAM--LETVRGAGYRL 225


>gi|291458269|ref|ZP_06597659.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418802|gb|EFE92521.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 240

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 21/214 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DD+ +V+   I L G      EGF  L+  +   +    D   ++  +I      
Sbjct: 4   ILVCDDDKQIVEAISIYLAG------EGFRLLKAYDGYDALKIMDQEKVDLLIIDVMMPG 57

Query: 61  LELPRI---IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L+  R    IR  S +P+I +S        +   + G DD + KP +  E++ARV +  R
Sbjct: 58  LDGIRTTLKIREKSSIPIIILSAKGEDNDKILGLNIGADDYITKPFNPLEMVARVKSQLR 117

Query: 118 RLKVSNNRAETGPI-RVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R     N  E G +  ++S G        ++  V+GE   L   E  IL  L+ N GK  
Sbjct: 118 RYTQLGNIGEAGNLDSIYSSGGLVINDDTKEVTVEGEPVKLTPIEYNILLLLVKNAGKVF 177

Query: 169 AKTQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201
           +  +I+++I+   ++A+  +N V  HI  +R+K+
Sbjct: 178 SIDEIYTSIWN--EQAIGADNTVAVHIRHIREKI 209


>gi|271498801|ref|YP_003331826.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342356|gb|ACZ75121.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 223

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 23/217 (10%)

Query: 8   RALVKDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLEL 63
           + L + GY   +A  G DG+    FN+LE           D   ++  L G  G +++E+
Sbjct: 18  KGLTEAGYAVDLARNGTDGL----FNALEHSY--------DAIILDVMLPGLNGWQIIEM 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
              +R  S VP++ ++    L   +   + G DD + KP    E++ R+  + RR  V  
Sbjct: 66  ---LRKKSDVPVLFLTARDQLHDRIHGLELGADDYLIKPFSFTELVLRIRTLLRRGVVRE 122

Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
            +      +R+    R    Q  V PL  +E  +L  L+   G+ +++T I S ++ + F
Sbjct: 123 ADHYAVADLRLDVLRRKATRQEVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWDMNF 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D   + NVV+  + +LR K+        + + R +GY
Sbjct: 183 DS--DTNVVDVAVKRLRAKIDKPFDIKLIHTVRGIGY 217


>gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
 gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
          Length = 231

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  ++  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQMISTYEIDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N    + E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSPKNEDGMIRIRSAEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|23502991|ref|NP_699118.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           suis 1330]
 gi|62290982|ref|YP_222775.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700892|ref|YP_415466.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|161620053|ref|YP_001593940.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           canis ATCC 23365]
 gi|163844158|ref|YP_001628563.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           suis ATCC 23445]
 gi|189025195|ref|YP_001935963.1| transcriptional regulator [Brucella abortus S19]
 gi|254690277|ref|ZP_05153531.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 6 str. 870]
 gi|254696392|ref|ZP_05158220.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254700774|ref|ZP_05162602.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           suis bv. 5 str. 513]
 gi|254705144|ref|ZP_05166972.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           suis bv. 3 str. 686]
 gi|254707339|ref|ZP_05169167.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis M163/99/10]
 gi|254709119|ref|ZP_05170930.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis B2/94]
 gi|254713455|ref|ZP_05175266.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           ceti M644/93/1]
 gi|254716189|ref|ZP_05178000.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           ceti M13/05/1]
 gi|254731306|ref|ZP_05189884.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 4 str. 292]
 gi|256030645|ref|ZP_05444259.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis M292/94/1]
 gi|256045749|ref|ZP_05448627.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256060106|ref|ZP_05450288.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           neotomae 5K33]
 gi|256112468|ref|ZP_05453389.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 3 str. Ether]
 gi|256258530|ref|ZP_05464066.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 9 str. C68]
 gi|260546246|ref|ZP_05821986.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260563045|ref|ZP_05833531.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260567387|ref|ZP_05837857.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260755816|ref|ZP_05868164.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759039|ref|ZP_05871387.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260760764|ref|ZP_05873107.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884841|ref|ZP_05896455.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261217962|ref|ZP_05932243.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261314822|ref|ZP_05954019.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261316619|ref|ZP_05955816.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261321188|ref|ZP_05960385.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324082|ref|ZP_05963279.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751283|ref|ZP_05994992.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261755848|ref|ZP_05999557.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|265987691|ref|ZP_06100248.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265992165|ref|ZP_06104722.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993903|ref|ZP_06106460.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|294851371|ref|ZP_06792044.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NVSL 07-0026]
 gi|297247369|ref|ZP_06931087.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus bv. 5 str. B3196]
 gi|23349030|gb|AAN31033.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           suis 1330]
 gi|62197114|gb|AAX75414.1| PhoB, phosphate regulon transcriptional regulatory protein Phob
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616993|emb|CAJ12102.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|161336864|gb|ABX63169.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           canis ATCC 23365]
 gi|163674881|gb|ABY38992.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           suis ATCC 23445]
 gi|189020767|gb|ACD73489.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|260096353|gb|EEW80229.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260153061|gb|EEW88153.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260156905|gb|EEW91985.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669357|gb|EEX56297.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671196|gb|EEX58017.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675924|gb|EEX62745.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260874369|gb|EEX81438.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260923051|gb|EEX89619.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293878|gb|EEX97374.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261295842|gb|EEX99338.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300062|gb|EEY03559.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261303848|gb|EEY07345.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261741036|gb|EEY28962.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261745601|gb|EEY33527.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262764884|gb|EEZ10805.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263003231|gb|EEZ15524.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|264659888|gb|EEZ30149.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294819960|gb|EFG36959.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NVSL 07-0026]
 gi|297174538|gb|EFH33885.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus bv. 5 str. B3196]
          Length = 228

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +     G DD V KP    E+LARV A+ R
Sbjct: 64  IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         LKV +   +    RV+   ++ EV      L   E R+LEY M + G+  
Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++Q+   ++G  D  V++  V+ H+ +LRK +      D + + R  GYS
Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYS 226


>gi|325687129|gb|EGD29152.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
          Length = 234

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N  + G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E +++E+LM N  K ++  +IF  ++    DE ++E  V  +IS LR+KL+
Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204


>gi|313904678|ref|ZP_07838052.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470471|gb|EFR65799.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 220

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 14/141 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120
           IR +S   ++ +S   + +  L   + G DD + KP     +LA++  I++R      L+
Sbjct: 67  IRENSNAHILIVSARDTKEDKLKGLNIGADDFIEKPYDIDILLAKIDGIFKRKYGVDELR 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N     G  ++  DG + EV  + F L R        LM N+G  + K  +F++I+G 
Sbjct: 127 DANIVLNIGKQKLAVDGTEVEVTAKEFELLR-------LLMENKGVNLKKEFLFNSIWG- 178

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +D   E+  +  HI  LR+K+
Sbjct: 179 YDSDSEQQTLTVHIKHLREKI 199


>gi|313890279|ref|ZP_07823913.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121384|gb|EFR44489.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
          Length = 236

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 24/179 (13%)

Query: 48  AIEAFLIGKGEKV-----------LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           AI AF  GK + V           LE+ + IR  S +P+I +S   S    +   + G D
Sbjct: 37  AIAAFEEGKPDLVILDLMLPEMDGLEVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGAD 96

Query: 97  DVVNKPIHHREILARVAAIYRRLKV------------SNNRAETGPIRVFSDGRDPEVQG 144
           D V KP  +RE+LARV A  RR +              N     G +++  D    +  G
Sbjct: 97  DYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGNQELTIGNLQILPDAFLAKKYG 156

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   L  RE  +L +L  + G+ + +  +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 157 KEVELTHREFELLHHLANHIGQVMTREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214


>gi|310640161|ref|YP_003944919.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309245111|gb|ADO54678.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 219

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 7/145 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R+ S VP+I ++        +  F+ G DD V KP   + ++AR  A+ +R++ 
Sbjct: 56  EVCRQVRSRSGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVE- 114

Query: 122 SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + + E+  +R  S   +      EV      L  +E  +L  L+ N+G  V++  I + 
Sbjct: 115 GHVQPESHILRFGSAMLNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVVSRDAILNR 174

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G+  E  +  VV++HI KLR KL
Sbjct: 175 VWGINFEG-DTRVVDTHIKKLRSKL 198


>gi|304405338|ref|ZP_07386997.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345377|gb|EFM11212.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 234

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 21/191 (10%)

Query: 49  IEAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           +E FL  K + VL    LP        R IRA S  P+I IS   S    +   ++G DD
Sbjct: 38  LECFLAVKPDLVLLDVNLPKFDGFYWCRQIRAQSTCPIIFISARDSQMDQVMALENGADD 97

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--RDPE-----VQGEVFPLP 150
            + KP     ++A++ +  RR   +    +     V S G    PE      QG    L 
Sbjct: 98  YITKPFDIEIVIAKIRSQLRRAYGAYAAGQEQERTVTSAGIVLYPERFVVSCQGNSIELT 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDP 209
           ++E  +LE LM   G+ V++ ++   ++   D+  +++N +  +I+++R+KL++    D 
Sbjct: 158 QKEAALLEVLMLKEGRVVSRERLLDLMWE--DQHFIDDNTLNVYITRVRRKLKDIGIGDR 215

Query: 210 VDSKRFLGYSI 220
           +++ R  GY +
Sbjct: 216 IETVRGAGYRL 226


>gi|292900777|ref|YP_003540146.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291200625|emb|CBJ47757.1| two-component response regulator [Erwinia amylovora ATCC 49946]
          Length = 219

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D  L++ G  +AL G+        N+ +   +LQS     V          G  +
Sbjct: 3   ILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGADL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R  +    +P++ +S   +L   +D  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 63  LRQWR--KEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  + G I +    +   V  +   +  +E  +L  L+   G+ V +  +   +Y 
Sbjct: 121 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+    N +E H+  LR+    KLG D + + R +GY ++
Sbjct: 181 WQDD-TSSNTLEVHMHNLRR----KLGKDRIKTVRGVGYRLE 217


>gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 243

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+       
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDKNGASG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|197336075|ref|YP_002155282.1| transcriptional regulatory protein PhoP [Vibrio fischeri MJ11]
 gi|197317565|gb|ACH67012.1| transcriptional regulatory protein PhoP [Vibrio fischeri MJ11]
          Length = 226

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 2/157 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           + +I R     P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR    
Sbjct: 64  IKQIRRKEINSPILILTARGNWQDKVEGLEAGADDYLVKPFQSEELIARLYALARRAAGF 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + ++     I +    +   V G+   L   E  I  YL+ N  K ++K Q   A+Y   
Sbjct: 124 TQSKVTAENIELDIKAKTIHVDGQFLQLTSFEYDIAAYLIKNSLKIISKQQFVDALYQE- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D  V+ N +E  IS+LRKK       + + + R  GY
Sbjct: 183 DSEVQLNNIEVIISRLRKKFAAVGHSELITTVRGQGY 219


>gi|154500201|ref|ZP_02038239.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC
           29799]
 gi|150270933|gb|EDM98207.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC
           29799]
          Length = 233

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 7/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R    +P+I +S    L++ ++    G DD + KP  + E+LARV A  RR +  ++ A
Sbjct: 69  LRKSRTMPIIVLSAKAGLESRVNVLKLGADDFIPKPFDNAEVLARVEAQLRRYRQFSSPA 128

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  + D             G+   +  RE  IL  LM+   K   + Q++  ++G 
Sbjct: 129 GEKHVLTWGDLILDKESVSVTAAGKDVTVTAREFEILALLMSYPKKVFTREQLYEQVWG- 187

Query: 181 FDEAVEENVVESHISKLRKKL 201
            +   ++N V  HIS LR KL
Sbjct: 188 GEYFGDDNTVNVHISNLRSKL 208


>gi|145589778|ref|YP_001156375.1| two component transcriptional regulator [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048184|gb|ABP34811.1| two component transcriptional regulator, winged helix family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 237

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 20/136 (14%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE--------- 141
            DSG DD V KP   +E++ARV A+ RR        +TGP+ V     DP          
Sbjct: 95  LDSGADDYVTKPFSPKELVARVRAMLRR---QMPIEDTGPLTVGPLKLDPSSHRVLATWP 151

Query: 142 -VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
             + +   L   E R+L++ MAN  +  ++  +   ++G  +  +EE  V+ HI +LR  
Sbjct: 152 NAESKAIALGPTEFRLLQFFMANPERVHSRASLLDKVWG-SEVYIEERTVDVHIKRLRAA 210

Query: 201 LRNKLGFDPVDSKRFL 216
           L       P D  R++
Sbjct: 211 LV------PFDCDRYI 220


>gi|52143461|ref|YP_083367.1| response regulator [Bacillus cereus E33L]
 gi|51976930|gb|AAU18480.1| response regulator [Bacillus cereus E33L]
          Length = 254

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 97  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 156

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 157 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 215

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 216 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 251


>gi|42780293|ref|NP_977540.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42736212|gb|AAS40148.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 234

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 19/229 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 7   LLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNDYDLIILDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR   
Sbjct: 65  DICPIIRQKTDCPIFFLTAKASDLDKISGFAHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 119 -LKVSNNRAETGPIRVFSDGRDP---EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +     +A +     F+  RD     V G V     +  ++L +   N     +K +I+
Sbjct: 125 QVMTHEQKAHSSSFGRFAIDRDSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
             ++G      ++N V  HI KLR+K+      DP     + + R LGY
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQ----DPSKPEYIKTVRGLGY 229


>gi|315643933|ref|ZP_07897103.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280308|gb|EFU43597.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  R IR  S +P++ +S        +    +G DD + KP +  E+  RV  + RR  
Sbjct: 63  IDTCRRIRETSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRRST 122

Query: 121 VSNNRAETGPI-RVFSDGRD-------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N   + G   R+  DG D           G    L  RE  IL  L    G+  +   
Sbjct: 123 QYNTELQQGHTDRIQIDGLDINRTTHEVTANGRSVSLTAREFEILYLLARQPGRIFSAED 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           IF  ++      V  N V  HIS LR KL  +LG+  + +   +GY I
Sbjct: 183 IFQQVWK-EKYYVSNNTVMVHISNLRDKLEKELGYKLIQTVWGVGYKI 229


>gi|311070610|ref|YP_003975533.1| YvrH protein [Bacillus atrophaeus 1942]
 gi|310871127|gb|ADP34602.1| YvrH [Bacillus atrophaeus 1942]
          Length = 236

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 7/144 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           IR  S VP+I +S        +     G DD + KP   +E+  RV A  RR        
Sbjct: 72  IRELSNVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRANYSQSKG 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++N  + GP ++     +    GE   L  +E ++++Y + N    ++K  +++A++G 
Sbjct: 132 IADNIIKVGPFQLSERKAELTKNGEPVELKPKELKLMKYFLQNPNMVISKETLYNAVWGE 191

Query: 181 FDEAVEENVVESHISKLRKKLRNK 204
            D    +N +  HI +LR+K+  K
Sbjct: 192 -DSFGFDNTIMVHIRRLREKIETK 214


>gi|300691962|ref|YP_003752957.1| two-component system response, response regulator receiver,
           transcriptional regulatory protein [Ralstonia
           solanacearum PSI07]
 gi|299079022|emb|CBJ51684.1| putative two-component system response, response regulator
           receiver, transcriptional regulatory protein [Ralstonia
           solanacearum PSI07]
          Length = 237

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFP 148
           +G DD V KP+   E++ARV A+ RR       S  R   GP  V   GR   + G    
Sbjct: 96  AGADDYVVKPVRRAELVARVGALLRRAAPRTGESLERMRVGPYAVDPLGRVLTLHGSQVE 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L  RE  +  YL  N GK V +  I  A++G      +   + +HISKLR KL
Sbjct: 156 LSPREFDLALYLFRNVGKLVPRELIEQAVWG-RSIGPDSRTLATHISKLRLKL 207


>gi|299146067|ref|ZP_07039135.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|298516558|gb|EFI40439.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 8/166 (4%)

Query: 61  LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           LEL R+ R     Q+P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR
Sbjct: 61  LELCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 120

Query: 119 LK-VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K V +N      + +  + R  + +G++   L  +E R+LEY M ++G  +++  +   
Sbjct: 121 NKEVPSNLLTCDNLVLDCNTRKAK-RGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKD 179

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   FD     N+V+ +++ LR K+        + +   LGY ++
Sbjct: 180 VWDKNFD--TNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 223


>gi|298247032|ref|ZP_06970837.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549691|gb|EFH83557.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 29/139 (20%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---------------------- 128
            + G DD ++KP   RE++ARV AI RR+ +    A+T                      
Sbjct: 91  LEVGADDYISKPFSMRELMARVRAILRRVDLDQRLAQTLQQARTEPPVAQISPTITPTPV 150

Query: 129 ------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 GP+ +  + R  ++ GE   L  RE  +L  L ++ G+  ++  +   ++G +D
Sbjct: 151 QPPIIRGPLEIDPNARIAKLHGESILLTPREYELLILLASHPGRAFSREFLLQQLWG-YD 209

Query: 183 EAVEENVVESHISKLRKKL 201
               +  V++H+++LRKKL
Sbjct: 210 YDGFDRTVDTHVTRLRKKL 228


>gi|295105634|emb|CBL03178.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 228

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 16/228 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
           M  +++D A +++        +G  ++GF S E       +A  ++  ++  L G+ G  
Sbjct: 1   MIYIVEDDASIRELEQYALQSNGYEVQGFESAEPFWQAMRAAEPELVILDVMLPGEDGFS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  R   +  ++P+I ++   S   T+   D G DD + KP    E L+RV    RR 
Sbjct: 61  ILKKLRNTPSLRKLPIIMVTAKSSELDTVRGLDCGADDYIAKPFGIMEFLSRVRVALRR- 119

Query: 120 KVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +  E  P       I++ +      V      L  +E  +L  L+ N    V +  
Sbjct: 120 ----SAPEVRPDVLVFHEIQLDNARHSVTVNSTPVELTYKEYCLLRLLLENTSLVVTRET 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G  D +VE   V+ HI  LRKKL +   +  + + R +GY +
Sbjct: 176 ILQVVWGT-DISVESRTVDMHIRTLRKKLGDAGRY--ICTVRKVGYKL 220


>gi|260891424|ref|ZP_05902687.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
 gi|260858807|gb|EEX73307.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
          Length = 200

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAET 128
           H+ V ++   D  S    +   D G DD + KP    E+LAR+ A+ RR    S+N+   
Sbjct: 72  HTSVLMLTARD--SADDKVKGLDLGADDYIVKPFDFNELLARIRAVVRRKYGNSSNKLVI 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + + +  +     G+   L  +E  +LEYLM ++ + +++ QI   ++  FD   + N
Sbjct: 130 GDLILDTSEKSVTRAGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD-FDYEGDSN 188

Query: 189 VVESHISKLRKK 200
           +++  I  +RKK
Sbjct: 189 IIDVLIKNIRKK 200


>gi|259503210|ref|ZP_05746112.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
           antri DSM 16041]
 gi|259168802|gb|EEW53297.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
           antri DSM 16041]
          Length = 226

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 16/153 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R IR  S VP+I I+            D G+DD + KP    E+LAR+  I RR+ 
Sbjct: 63  LTVLRRIRQTSDVPVIMITARSQTADIRLALDQGLDDYITKPFEIEELLARIRVILRRI- 121

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              NR +T       GP  +        V G    L  +E  ++  LM + G   ++  +
Sbjct: 122 ---NREQTLPGGYAFGPFNLDLLRHRFSVAGREIHLTPKEFALMAALMKDPGIVKSRDDL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            + I+G +D A + N V+ +I    + LRNKLG
Sbjct: 179 LNQIWG-YDFAGQTNTVDVYI----RALRNKLG 206


>gi|257875264|ref|ZP_05654917.1| response regulator [Enterococcus casseliflavus EC20]
 gi|257809430|gb|EEV38250.1| response regulator [Enterococcus casseliflavus EC20]
          Length = 233

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 12/148 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL +IIR     P+I IS     Q  +   D G DD V KP    E+ AR+    R  +
Sbjct: 62  MELLKIIRKRMNTPIIVISARKDEQDKVQALDLGADDYVTKPFSTNELFARIRTALRHKE 121

Query: 121 VSNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            ++    + PI V       F      + Q E+  L + E RI+  +  N GK V    +
Sbjct: 122 TTS--FSSSPILVNKELTIDFEKKILYKNQNEIH-LTKNEYRIMAVMFKNLGKVVTYDTL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            S ++G F  A +   +  +IS +RKK+
Sbjct: 179 TSEVWGPF--AADAQTLRVNISNIRKKI 204


>gi|229917890|ref|YP_002886536.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469319|gb|ACQ71091.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 13/137 (9%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPL 149
           F +G DD V KPI   E+  R+ A+ RR ++ + ++ +     +       E   E   L
Sbjct: 92  FHAGADDYVVKPIDLEELELRIEALLRRARIHHSHQIQLNDCVLDETTMTLETTSETIEL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           PR+E  +L +L  +  +   + Q+   I+G ++   E   V+ HI++LR +L+      P
Sbjct: 152 PRKEFELLYFLATHLNQVFTRQQLLDRIWG-YETESETRTVDVHINRLRARLK------P 204

Query: 210 VDSKRF-----LGYSID 221
           +D+ +      LGY ++
Sbjct: 205 IDAFQISTVWGLGYRLE 221


>gi|169826021|ref|YP_001696179.1| YxdJ [Lysinibacillus sphaericus C3-41]
 gi|168990509|gb|ACA38049.1| YxdJ [Lysinibacillus sphaericus C3-41]
          Length = 234

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 9/161 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R +R H+  P+I IS        +   ++G DD + KP ++  +LA++ +  RR      
Sbjct: 67  RQLRQHTTCPIIFISARSGEMDQIFALENGGDDFITKPFNYEIVLAKIRSHLRRTYGEYA 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      + G + +  +  +        PL ++E  ILE LM N  K V + Q+   ++
Sbjct: 127 TRQEERTIKQGQLILHLERMELHKNELEIPLQKKECIILELLMGNAPKVVTREQLLEELW 186

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D+A V+EN +  +++++RKKL +      +++ R  GY
Sbjct: 187 D--DQAFVDENTLNVNMTRVRKKLADYHISSTIETVRGAGY 225


>gi|152983903|ref|YP_001348990.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7]
 gi|150959061|gb|ABR81086.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7]
          Length = 230

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 25/225 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSA--REDVSAIEAFLIGK 56
            +LIDD   ++      F    ++ +G+  LE    EE L  +A  R D+  ++  L  +
Sbjct: 8   ILLIDDEPQIRK-----FLRISLTAQGYRVLEAGNGEEGLAQAALNRPDLVVLDLGLPDR 62

Query: 57  -GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G+ +L   R +R  S VP++ +S   S    +   D G +D V KP   +E LARV  +
Sbjct: 63  DGQDIL---RDLREWSAVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVL 119

Query: 116 YRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            R+     +       GP++V    R   + G    L R+E  +L  L  + G+ V + Q
Sbjct: 120 LRQAAQGESPEAAVTVGPLQVDLAYRRVSLAGAEVALTRKEYAVLAALARHLGRVVTQQQ 179

Query: 173 IFSAIYGLFDEAVEENVVESH-ISKLRKKLRNKLGFDPVDSKRFL 216
           +   I+G        +V ++H +  +   LR KLG DP  S RFL
Sbjct: 180 LLRDIWG------PTHVEDTHYLRVVVGHLRQKLGDDPA-SPRFL 217


>gi|83717734|ref|YP_439572.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|167577990|ref|ZP_02370864.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           TXDOH]
 gi|167616115|ref|ZP_02384750.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           Bt4]
 gi|257142704|ref|ZP_05590966.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|83651559|gb|ABC35623.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
          Length = 229

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 23/220 (10%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           + L + G+IA + +DGV+  G +  E EE+       D+  ++  L G  G  VLE    
Sbjct: 18  KGLTEAGFIADWVEDGVT--GLHQAETEEY-------DLIILDVMLPGHDGWTVLER--- 65

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R     P++ ++    +   +   + G DD V KP    E++ARV +I RR      R 
Sbjct: 66  LRRERSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR---GQGRE 122

Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
            T      + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ + F
Sbjct: 123 STILKIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDMNF 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVV++ I +LR K+ +      + + R +GY ++
Sbjct: 183 NS--DTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|17549073|ref|NP_522413.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17431324|emb|CAD18003.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
          Length = 246

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146
           F++GVDD++       E+ ARV  + RR +     A      GP R+    R   V    
Sbjct: 92  FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNEAP 151

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L  RE      L ++ G  +++ QI SA++G  D ++ E  +E HI KLRKKL
Sbjct: 152 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 205


>gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 226

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 12/181 (6%)

Query: 48  AIEAFLIGKGEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           AI   L+  G   LE+ R++R     S +P++ ++        +   + G DD + KP  
Sbjct: 47  AIILDLMLPGMSGLEVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFS 106

Query: 105 HREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEY 159
            R +LAR+ A+ +R +    R++  PI V     DP      V+G    L   E  IL +
Sbjct: 107 PRILLARLKAVLKRTRPPEGRSDE-PIVVGELVIDPHRYSVRVRGREIILSATEFAILSF 165

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L  N G   ++ QI  A+ G  D  V E  V+  I  +RKKL +    D + + R +GY 
Sbjct: 166 LARNPGWVFSRQQIIDAVKG-EDYPVTERAVDVQILSIRKKLGD--ARDYIQTVRGVGYR 222

Query: 220 I 220
           +
Sbjct: 223 L 223


>gi|271969946|ref|YP_003344142.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513121|gb|ACZ91399.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 229

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R+IRA S VP++ ++   +    L   D G DD V KP   RE++ARV  + RR++
Sbjct: 62  LDVCRVIRAESDVPVLMLTARATEDDLLVGLDLGADDYVTKPYSPRELMARVRTLLRRVR 121

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S +  ET   G + V S      V G        E RILE L A   +   + Q+   +
Sbjct: 122 RSRDPEETLKVGDLLVDSARHRVSVAGSPVDCTPAEFRILETLAAQPERVFTRKQLLEEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G FD  +    V+ H+  LRKK+
Sbjct: 182 HG-FDRFITRRTVDVHMLNLRKKI 204


>gi|302877112|ref|YP_003845745.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|302579969|gb|ADL53981.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 222

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR+ S VP+I I+   +    L     G DD + KP + + +LAR+ ++ +R   + N  
Sbjct: 67  IRSFSTVPIIFITSRDTNVDELMSITLGGDDFITKPYNAQILLARINSLLKRSYPNENAG 126

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   I++       E + +   L + E +IL YL+ N+G+ V +  I      L+D 
Sbjct: 127 EFIEYNGIKLNILSSKVEYEDKEIELTKNELKILHYLLINKGRIVTRVDIMEY---LWDS 183

Query: 184 A--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A  V +N +  +I++LR K  +    + + +KR  GY +
Sbjct: 184 ALFVNDNTLTVNITRLRNKFEDIGVKEFIKTKRGQGYIV 222


>gi|291298248|ref|YP_003509526.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567468|gb|ADD40433.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 233

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 27/217 (12%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L ++GY      DG+S  G            S R D+  ++  L       +E+ R +
Sbjct: 23  RYLEREGYRVTLAADGLS--GLAEYR-------SGRPDLVVLDLML--PKLPGIEVCRAL 71

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S+VP+I ++        +     G DD ++KP   RE++ RVAA+ RR  V    AE
Sbjct: 72  RIESEVPVIMLTALGDESDRIAGLSVGADDYLSKPFSPRELVLRVAAVLRR-AVRTEAAE 130

Query: 128 TGPIRVFSDGR---DP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             P    +DG    DP      ++G    L  RE  +LE+L+ + G+  ++ ++   ++ 
Sbjct: 131 R-PGEQLTDGELILDPGSRVATLRGTKLNLTVREFDLLEFLLRHPGQVFSRAELLERVWD 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
                 +++ V  H+ +LR+K+ +     P   KR +
Sbjct: 190 W--TFGDQSTVTVHVRRLREKIEDA----PAQPKRLV 220


>gi|227889097|ref|ZP_04006902.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|268318621|ref|YP_003292277.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|227850326|gb|EEJ60412.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|262396996|emb|CAX66010.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 235

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 9/151 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121

Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++    E         G + +  +    E  GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 LTQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 211


>gi|225868178|ref|YP_002744126.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701454|emb|CAW98586.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 236

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                V+   A +G        +++  D    +  G+   L  RE  +L +L  + G+ +
Sbjct: 121 TIETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214


>gi|188579674|ref|YP_001923119.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179343172|gb|ACB78584.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 9/167 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R +R      P++ +S    +   +    +G DD + KP    E+LAR   + RR 
Sbjct: 60  LSLVRSLREQEIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRR 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +  ++E    RV     D         G    L  RE R+LEYLM + G+ V +T + 
Sbjct: 120 AAATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLL 179

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++   FD   + NV++ H+S+LR K+        + + R  GY I
Sbjct: 180 EHVWDYHFDP--QTNVIDVHVSRLRSKIDRGFEHPMIHTVRGAGYVI 224


>gi|154499759|ref|ZP_02037797.1| hypothetical protein BACCAP_03416 [Bacteroides capillosus ATCC
           29799]
 gi|150271357|gb|EDM98614.1| hypothetical protein BACCAP_03416 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 14/172 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G    ++   IRA S +P+I ++   +    L+    G D  + KP +   +LA++A++ 
Sbjct: 58  GSNGFDICSQIRAFSDLPIIFVTSSNTDMDELNSIMLGGDAFITKPYNTAILLAKIASLL 117

Query: 117 RRLKVSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R+   +   A+T  I V++           E  G+   L + E +IL YL  N GK  ++
Sbjct: 118 RKRTAA---AQTSEILVWNSATLHLESGTIEYGGQKLELTKNESKILYYLFKNAGKICSR 174

Query: 171 TQIFSAIYGLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I      L+D    V++N +  +I+++R+KL      D + +K   GY I
Sbjct: 175 NDIVDF---LWDNQLYVDDNALSVNITRIREKLAGIGLTDFIKTKHRQGYMI 223


>gi|153829425|ref|ZP_01982092.1| transcriptional regulator [Vibrio cholerae 623-39]
 gi|148875079|gb|EDL73214.1| transcriptional regulator [Vibrio cholerae 623-39]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L L + IRA  +QV ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR 
Sbjct: 60  LALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   L+ ++       +RV+   +  E       L  +E  ILE  +   G   ++
Sbjct: 120 IQTHTCNKLRFADLELCLSTMRVYRAEQPIE-------LTAKEISILELFLRKPGHIFSR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +I + ++G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 173 ERILANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|160900345|ref|YP_001565927.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365929|gb|ABX37542.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 231

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 10/152 (6%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L L R  RA S+   VP++ ++        +   D+G DD + KP   +E+LAR+ 
Sbjct: 60  GASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 114 AIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR       ++   G + + +       QG++  +   E ++L YLM +  +  ++ 
Sbjct: 120 AVLRRRAPEQIQDKVNIGELVLDAAAHRVSWQGDMIKVGPTEFKLLHYLMKHPERVHSRA 179

Query: 172 QIFSAIYG--LFDEAVEENVVESHISKLRKKL 201
           Q+   ++G  +F   +EE  V+ H+ +LR+ L
Sbjct: 180 QLLDKVWGDHVF---IEERTVDVHVKRLREAL 208


>gi|17988267|ref|NP_540901.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 1 str. 16M]
 gi|237816486|ref|ZP_04595479.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus str. 2308 A]
 gi|17984036|gb|AAL53165.1| phosphate regulon transcriptional regulatory protein phob [Brucella
           melitensis bv. 1 str. 16M]
 gi|237788553|gb|EEP62768.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus str. 2308 A]
          Length = 255

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +     G DD V KP    E+LARV A+ R
Sbjct: 91  IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 150

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         LKV +   +    RV+   ++ EV      L   E R+LEY M + G+  
Sbjct: 151 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 203

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++Q+   ++G  D  V++  V+ H+ +LRK +      D + + R  GYS
Sbjct: 204 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYS 253


>gi|73662382|ref|YP_301163.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72494897|dbj|BAE18218.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 236

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 11/141 (7%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---------GPIRVFSDGRDPE 141
            + G DD + KP   RE++ARV AI RR  + N              G IR+  +  +  
Sbjct: 93  LELGADDYMTKPFSPREVVARVKAILRRSAIVNEAVPVENDEDDILIGSIRIRPEYFEVY 152

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + E+  L  +E  +L YL+  +G+ + +  + ++++  ++ A +  +V+ HIS LR KL
Sbjct: 153 REDELLELTPKEFELLLYLIERQGRVITREHMLNSVWN-YEFAGDSRIVDVHISHLRDKL 211

Query: 202 -RNKLGFDPVDSKRFLGYSID 221
             N      + + R LGY ++
Sbjct: 212 EENPKQPKLIKTVRGLGYKLE 232


>gi|332359136|gb|EGJ36957.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
          Length = 234

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N  + G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E +++E+LM N  K ++  +IF  ++    DE ++E  V  +IS LR+KL+
Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204


>gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 247

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 18/188 (9%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAH-SQVPLIGI 78
           +L +E W   +A + + AI A    + + V+           E+ R +R   + VP++ +
Sbjct: 39  ALRYEGWQVRTAGDGMGAIRAARQFQPDAVVLDVMLPDLDGFEVLRKLREDDATVPVLFL 98

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-----TGPIRV 133
           +   +++  +     G DD V KP    E++AR+ A+ RR   +    +      G + +
Sbjct: 99  TARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGFAVTARQDAVLTVGDLTL 158

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             +  +    G++  L   E  +L YLM N  + ++K QI   ++  +D   + NVVE +
Sbjct: 159 NEESHEVRRSGQLITLTATEFELLRYLMRNPRRVLSKAQILDRVWN-YDFGGQANVVELY 217

Query: 194 ISKLRKKL 201
           IS LRKK+
Sbjct: 218 ISYLRKKI 225


>gi|324991294|gb|EGC23227.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
          Length = 234

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N  + G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E +++E+LM N  K ++  +IF  ++    DE ++E  V  +IS LR+KL+
Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204


>gi|317404897|gb|EFV85265.1| two-component system [Achromobacter xylosoxidans C54]
          Length = 233

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 19/182 (10%)

Query: 48  AIEAF-----------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           A+EAF           L+  G   L++ R +RA S  P++ ++        +   +SG D
Sbjct: 37  AVEAFRRHDPAITILDLMLPGRDGLQVCRDLRAFSSAPILMLTAREDDLDQILGLESGAD 96

Query: 97  DVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           D V KP+  R +LAR+ A+ RR   L+    R E GP+ +    R     G    L   E
Sbjct: 97  DYVIKPVEPRVLLARIRALLRRHSQLEEPPERLEFGPLVIDRRTRAVVHGGVEVDLTTME 156

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             +L  L +  G+ + +  + +A+ G     +E N ++  +     KLR KL  DP D  
Sbjct: 157 FEMLWALASQAGQVLTRDDLLNAVRG-----IEFNGLDRSVDVCVSKLRRKLDDDPRDPA 211

Query: 214 RF 215
           R 
Sbjct: 212 RI 213


>gi|312134119|ref|YP_004001457.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311774170|gb|ADQ03657.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 230

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 85/163 (52%), Gaps = 8/163 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           +R  S VP+I I+        +   + G DD + KP   RE++ARV A  RR  +S+ + 
Sbjct: 69  VREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARVRANLRRTALSSVQD 128

Query: 126 ---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + G + +  +  + +  G+V  L  RE  +L++LM+ +G+  ++ ++   ++G ++
Sbjct: 129 GKVLKAGALTLNPETFEVKKNGKVVELTVREYELLKFLMSQKGQVFSREELLEKVWG-YE 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
              +   V+  + +LR+K+ +    +P  + +KR +GY  + N
Sbjct: 188 YYGDVRTVDVTVRRLREKIEDNPS-EPTFILTKRGIGYYFNPN 229


>gi|294011066|ref|YP_003544526.1| two-component system response regulator CreB [Sphingobium japonicum
           UT26S]
 gi|292674396|dbj|BAI95914.1| two-component system response regulator CreB [Sphingobium japonicum
           UT26S]
          Length = 235

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 22/174 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R +R  S +P+I ++              G DD ++KP   R ++AR+ AI RR +
Sbjct: 62  LELLRRLREKSHMPVIFLTSKADELDEALGLAMGADDYISKPFSQRLLIARIRAILRRAE 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER---------------RILEYLMANRG 165
           VS  +A+  P    +   +P V+G +   P R R                ILE L    G
Sbjct: 122 VS--KADAAPDEPVA---EPIVRGRLEMDPARHRVKWMGLDVTLTVTEFLILETLATRPG 176

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
               + Q+  A Y   D  V++  ++SHI +LR+K R     F+ +D+    GY
Sbjct: 177 VVKNRNQLMDAAYQ-DDVYVDDRTIDSHIKRLRRKFREVDPEFNAIDTLYGAGY 229


>gi|228943430|ref|ZP_04105874.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228976315|ref|ZP_04136786.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783419|gb|EEM31527.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816210|gb|EEM62391.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 233

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           RA+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K+ S    
Sbjct: 78  RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQTI 137

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +           E   LP +E  +L  L    G+   + Q+   I+G+ D A +
Sbjct: 138 HLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGI-DYAGD 196

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  V+ HI +LR++      F  +++ R LGY ++
Sbjct: 197 DRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLE 230


>gi|229029684|ref|ZP_04185759.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228731626|gb|EEL82533.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 218

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 61  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 120

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  V  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 121 IQVGDVLLNRKTFEVSVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 179

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 180 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 215


>gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676]
 gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676]
          Length = 231

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKLNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N    + E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGIIRIRSVEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETVINGEKFIHTVWGVGYKIE 230


>gi|229062134|ref|ZP_04199458.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228717117|gb|EEL68793.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 235

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L   ++      + +F      E +G+   L + E  +LE LM    +   + ++  A  
Sbjct: 125 LAAESDCLGVNGLLLFPSQHTVEWKGQQTELTKNEFYLLECLMKQANQYATREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 234

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 9/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP--- 130
           P++ ++   S+   +     G DD V KP    E++ R+  I RR    +++  +     
Sbjct: 80  PVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNAVDDQDGSATMTY 139

Query: 131 --IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             + +  D  +    GE+  L   E  +L YLM NR   ++K++I   ++  +D   + N
Sbjct: 140 ADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMQNREVVLSKSKILDNVWH-YDFGGDGN 198

Query: 189 VVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VVES+IS LR+K+    G  P + + R +GY
Sbjct: 199 VVESYISYLRRKIDT--GDTPLIHTVRGVGY 227


>gi|226310528|ref|YP_002770422.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093476|dbj|BAH41918.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 238

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 17/172 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            EL   +R  ++ P+  ++   +    L  F  G DD + KP H  E++AR+ A  RR  
Sbjct: 65  FELCGAVRQRTKAPIFFLTAKGTDFDKLSGFAYGADDYITKPFHPLEVVARMKAHLRRTL 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                     R + G  +V  +  +  V GE    P +   +L +      +   K QI+
Sbjct: 125 GGSAPSQEEKRYDFGRFQVNVEAAELFVNGERVDCPAQVFSLLVFFCQYPNRVFTKEQIY 184

Query: 175 SAI----YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
             +    YG+FD    EN V  HI KLR+++    G  P  + + R LGY +
Sbjct: 185 DHVWKDEYGMFD----ENTVMVHIHKLRQRIEENPG-QPKLLVTVRGLGYKL 231


>gi|169829969|ref|YP_001700127.1| response regulator [Lysinibacillus sphaericus C3-41]
 gi|168994457|gb|ACA41997.1| Response regulator [Lysinibacillus sphaericus C3-41]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            DSG DD + KP    E+LAR+ A+ RR  KV     +   +++  D R          L
Sbjct: 91  LDSGADDYLVKPFKMEELLARIRAVLRRKEKVIEQVIQVENLQLNIDSRVFLRDNTEIEL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            + E  +LE+L  N+G  + + QI   I+G +D  V  N +++ +  +RKK+        
Sbjct: 151 TKNEFALLEFLFINKGHVLTREQICIYIWG-YDFDVSNNSLDALVKLVRKKIDTSHEKSH 209

Query: 210 VDSKRFLGYSI 220
           + + R +GY +
Sbjct: 210 IQNVRGIGYKL 220


>gi|92113188|ref|YP_573116.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91796278|gb|ABE58417.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 230

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGPIRVFSDGRDPEVQGEV 146
            ++G DD ++KP+   E+ AR+ A+ RRL    K      E G +++        + GE 
Sbjct: 92  LEAGADDFLHKPLRVTELRARIEALGRRLGYVDKDGTTLLECGLLQLDLAAGYIRLNGET 151

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             L  RE R+    + N G+   ++ +   I+G+   A+    V++HIS LR+KL+
Sbjct: 152 VELTDREYRLAALFLQNPGQLFTRSYLLERIWGV-SGALNTRTVDTHISGLRRKLK 206


>gi|59712003|ref|YP_204779.1| DNA-binding response regulator [Vibrio fischeri ES114]
 gi|59480104|gb|AAW85891.1| DNA-binding response regulator [Vibrio fischeri ES114]
          Length = 218

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 24/207 (11%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRI--------IRAHS-QVPLIGI 78
           +LE  +W+   +++ V A+      + + +   L LP++        IR  +   P+I +
Sbjct: 19  TLESADWVPELSQDGVDALYRATTEEWDAIVLDLGLPKLNGLTVLKSIRDENINTPVIIL 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS-DG 137
           S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +    I   S D 
Sbjct: 79  SARDTLSQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPILKIGDLSLDT 136

Query: 138 RDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHI 194
           R  +V  Q +   L   E +++ Y M N  K +++T +   IY   FD   + N VE  I
Sbjct: 137 RSSKVLWQDQAVSLTALEYKVVAYFMHNPDKVISRTTLVEHIYKQDFDR--DSNTVEVFI 194

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++RKK+   +    + + R LGY ++
Sbjct: 195 GRIRKKIAPNI----IKTVRGLGYQLN 217


>gi|22536790|ref|NP_687641.1| DNA-binding response regulator VncR [Streptococcus agalactiae
           2603V/R]
 gi|25010662|ref|NP_735057.1| hypothetical protein gbs0597 [Streptococcus agalactiae NEM316]
 gi|76788680|ref|YP_329329.1| DNA-binding response regulator VncR [Streptococcus agalactiae A909]
 gi|76799863|ref|ZP_00781893.1| response regulator [Streptococcus agalactiae 18RS21]
 gi|77406749|ref|ZP_00783785.1| DNA-binding response regulator VncR [Streptococcus agalactiae H36B]
 gi|77408530|ref|ZP_00785267.1| DNA-binding response regulator VncR [Streptococcus agalactiae COH1]
 gi|77411096|ref|ZP_00787449.1| DNA-binding response regulator VncR [Streptococcus agalactiae
           CJB111]
 gi|77414291|ref|ZP_00790450.1| DNA-binding response regulator VncR [Streptococcus agalactiae 515]
 gi|22533635|gb|AAM99513.1|AE014219_5 DNA-binding response regulator VncR [Streptococcus agalactiae
           2603V/R]
 gi|23095016|emb|CAD46241.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563737|gb|ABA46321.1| DNA-binding response regulator VncR [Streptococcus agalactiae A909]
 gi|76584783|gb|EAO61511.1| response regulator [Streptococcus agalactiae 18RS21]
 gi|77159670|gb|EAO70822.1| DNA-binding response regulator VncR [Streptococcus agalactiae 515]
 gi|77162819|gb|EAO73777.1| DNA-binding response regulator VncR [Streptococcus agalactiae
           CJB111]
 gi|77172887|gb|EAO76019.1| DNA-binding response regulator VncR [Streptococcus agalactiae COH1]
 gi|77174626|gb|EAO77459.1| DNA-binding response regulator VncR [Streptococcus agalactiae H36B]
          Length = 217

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ ++ ++  
Sbjct: 59  LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNF 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   + V  +    ++  E   +  +E  IL+ L+ N G+ + + QI   ++  
Sbjct: 119 GHLEKFEYKNLSVNFNSYTAKINDEKIDVNAKELEILKCLLDNDGQVLTRMQIIDYVWKD 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + VV+ +I +LRKKL+     D + + R +GY ++
Sbjct: 179 SEEIPYDRVVDVYIKELRKKLQ----LDCITTIRNVGYKLE 215


>gi|330940225|gb|EGH43362.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 227

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129
            P++ IS    +   +    +G DD + KP    E+ ARV  + RR   +  +    +  
Sbjct: 74  TPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAAKTVLQVA 133

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +    R+    GE   L   E ++LE+LM N G+ + +  IF  ++G  FD     N
Sbjct: 134 DLELNLITREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHFDPGT--N 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ HI +LRKK+        + + R  GY I
Sbjct: 192 LIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|307947387|ref|ZP_07662721.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4]
 gi|307769529|gb|EFO28756.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4]
          Length = 242

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 101/212 (47%), Gaps = 20/212 (9%)

Query: 4   LIDDRALVKDGYIALFGD---DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           ++DD   ++D   AL  +   D V +E  +       ++ S + D+  I+  L  + E  
Sbjct: 8   IVDDEIGMRDALSALLTENEFDPVPMECISDFNV---VRKSVKLDLVIIDLQL--RNESG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL + IR    +P++ ++        +   ++G DD + KP + RE++AR+ A+ RR +
Sbjct: 63  LELAKAIRKTEDLPIVMLTGQGDETDQIVGLETGADDYLLKPFNPRELVARIKAVLRRYQ 122

Query: 121 VSNNRA-----ETGPI---RVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVA 169
            + + A       G I   R+  D +D  +    GE   L   E R+LEY +A   K ++
Sbjct: 123 PNQHNAVSADDTAGRISFGRMMVDQQDRALYGPDGEEIVLTNAEFRLLEYFLARPNKVIS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  + + +     + V+   V+  I +LR+K+
Sbjct: 183 RLDLLTELGSDLTKYVDRT-VDVLILRLRRKI 213


>gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family
           [Leptospirillum ferrodiazotrophum]
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 12/204 (5%)

Query: 24  VSLEGFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIR---AHSQVPLIG 77
           + +EGF      +    L  + R    AI   L+  G   L + R+I+   A S  P++ 
Sbjct: 22  LKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGLTVNRLIKQDPAISATPVVI 81

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNRAETGPIRVF 134
           ++        +   + G DD + KP H +E++ARV A+ RR +       R   GP+ + 
Sbjct: 82  VTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRRRETQQRLTERMSIGPVTID 141

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
               +   +G   PL  +E  +L  LM   G+ + +  + + ++G  D    +  V+ HI
Sbjct: 142 IGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLLNTVWG-DDYEGTDRTVDVHI 200

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGY 218
            +LRKK+     +  V++ + +GY
Sbjct: 201 RRLRKKMGESAAW--VETVKQIGY 222


>gi|229019664|ref|ZP_04176472.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229025901|ref|ZP_04182296.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228735404|gb|EEL86004.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228741627|gb|EEL91819.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 237

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR+ S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 67  RQIRSVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 126

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 127 SVAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 184

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 185 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 227


>gi|210622831|ref|ZP_03293375.1| hypothetical protein CLOHIR_01323 [Clostridium hiranonis DSM 13275]
 gi|210154048|gb|EEA85054.1| hypothetical protein CLOHIR_01323 [Clostridium hiranonis DSM 13275]
          Length = 228

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 19/232 (8%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           +F + DD +L+     AL    G  ++   +++  E L  + + D++ ++  L  G G +
Sbjct: 4   IFFVEDDLSLISGLSFAL-KKQGYEVDNARTIDEAEKLWQNNKYDLAILDISLPDGSGYQ 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           + E    IR +S++P+I ++        +   D G DD + KP      L++V AI RR 
Sbjct: 63  LCEK---IRLNSKIPIIFLTAADEETDIIMGLDMGADDYITKPFKLAVFLSKVNAILRRS 119

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N    +  I V     D    GE   L   E ++L   M N    +++ QI   
Sbjct: 120 NDFNQKNTVLNSNGISVNLLNGDVTKNGETLNLTSGEYKLLCLFMENPNIILSQEQILGK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSIDWN 223
           ++   ++ ++ + +  +I +LRKK+ +    DP +     + R +GY   WN
Sbjct: 180 LWDSNNDFIDNSTLTVYIRRLRKKVED----DPSNPTNIVTVRRMGYK--WN 225


>gi|207724572|ref|YP_002254969.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206589794|emb|CAQ36755.1| response regulator protein [Ralstonia solanacearum MolK2]
          Length = 245

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146
           F++GVDD++       E+ ARV  + RR +     A      GP R+    R   V    
Sbjct: 92  FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNETP 151

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L  RE      L ++ G  +++ QI SA++G  D ++ E  +E HI KLRKKL
Sbjct: 152 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 205


>gi|167751102|ref|ZP_02423229.1| hypothetical protein EUBSIR_02087 [Eubacterium siraeum DSM 15702]
 gi|167656020|gb|EDS00150.1| hypothetical protein EUBSIR_02087 [Eubacterium siraeum DSM 15702]
          Length = 223

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  S+VP+I +S        +   + G DD + KP     + A++ A+ RR    S N 
Sbjct: 67  IRKLSKVPVIFLSSASDNMNVVMAMNMGGDDFIAKPFDLSVLTAKINAVLRRAYSFSGNS 126

Query: 126 AETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  V  D     V    +   L + E RIL  LM N G+ +++  +   ++   D 
Sbjct: 127 DLISHGSVILDISSAVVTNGDKKIELTKNELRILRTLMENAGRIISRDTLMQRLWET-DC 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V+EN +  ++S+LRKKL N    + + +K  +GY I
Sbjct: 186 FVDENTLTVNVSRLRKKLENIGLENYITTKVGMGYMI 222


>gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
 gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
          Length = 240

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 10/145 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SN 123
           +R  S++P+I +S        +     G DD + KP +  E++ARV A  RR +      
Sbjct: 69  LREKSRIPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRRYRAWSGGE 128

Query: 124 NRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  P ++ + G       R   V+GE   L   E +ILE LMA+ G+     QI+  
Sbjct: 129 TEKKKDPDQIVNGGLVLDKKQRVIFVEGEEVHLTATEYKILELLMAHPGQVFPAEQIYEN 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++    +   EN V  HI  +R+K+
Sbjct: 189 VWQETADYTVENTVMVHIRHIREKV 213


>gi|120556501|ref|YP_960852.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120326350|gb|ABM20665.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 230

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 14/157 (8%)

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++   A + +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGVELARRLKKEEATADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP------EVQGEVFPLPRRERRILEYLMANRGKR 167
           A+ RR   +       PI V     DP       V G +   P  E R+L++ M ++ + 
Sbjct: 119 AVLRR---ATPPGVDSPIEVDGLTLDPIGHRVTTVDGAINMGP-TEYRLLQFFMTHQERV 174

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
             ++Q+   ++G  +  VEE  V+ HI +LRK L ++
Sbjct: 175 YTRSQLLDQVWG-GNVYVEERTVDVHIRRLRKALGDR 210


>gi|150389766|ref|YP_001319815.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949628|gb|ABR48156.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 3/133 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFP 148
            DSG DD + KP    E+LAR+ AI RR    + +   + G +++         + +   
Sbjct: 91  LDSGADDYLAKPFATEELLARIRAISRRKGEVILDGTLKYGDVQLNPSTLKLSKESKEVK 150

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L  +E  +L +L+       +K  I   I+G FD  VE N VE +IS LRKKL       
Sbjct: 151 LTLKESDLLAFLILRNNLASSKELIIEKIWG-FDSDVEHNHVEVYISFLRKKLLFLTSKV 209

Query: 209 PVDSKRFLGYSID 221
            +++ R +GY ++
Sbjct: 210 VINTLRGVGYILE 222


>gi|77406220|ref|ZP_00783289.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77175170|gb|EAO77970.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
          Length = 223

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 104/210 (49%), Gaps = 13/210 (6%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L ++GY  +   +G   E  N L+ EE      +  ++ I   ++   + + EL     A
Sbjct: 21  LTQEGYQFITASNGQ--EALNCLDTEE-----VQLIITDIMMPMMDGYQLIQELRS---A 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128
              VP+I ++    ++     F  G DD + KP+  +E+  R+ A+ RR   V+ ++   
Sbjct: 71  AYNVPIIVMTAKSQMEDMTKGFGLGXDDYMVKPVQLQELALRIKALLRRANIVAQHQLII 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G   +  D    +   +    P++E R+L +L++   +   + ++  +I+G+ D  ++E 
Sbjct: 131 GNTCLNEDELSLKYFEQEIVFPQKEFRVLFHLLSYPNRIFTRLELLDSIWGM-DTDLDER 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           VV++ I+K+R+K+ +   F  +++ R +GY
Sbjct: 190 VVDACINKIRRKVEHLPDF-KIETVRGVGY 218


>gi|319406352|emb|CBI79991.1| two-component response regulator [Bartonella sp. AR 15-3]
          Length = 227

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 9/145 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
           + P+I I++  +   T+  F  GV+D V KP     +LAR+ A  R+ K + N     GP
Sbjct: 76  RAPIIMITNCDTDCDTILGFKIGVNDYVIKPFRFLVLLARIRAQLRQYKYNENAIFYIGP 135

Query: 131 IRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             +F       +  Q +   L  +E  IL+YL  NR K V +  +   I+G ++  +  +
Sbjct: 136 Y-IFKPREKFLIDKQNDKIYLTEKETAILQYLYDNRNKIVNRETLLEHIWG-YNTGIITH 193

Query: 189 VVESHISKLRKKLRNKLGFDPVDSK 213
            +E+HI +LRKK+      DP  +K
Sbjct: 194 TLETHIYRLRKKIEK----DPSKAK 214


>gi|304394459|ref|ZP_07376380.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
           sp. R2A130]
 gi|303293369|gb|EFL87748.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
           sp. R2A130]
          Length = 233

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           Q+P+I ++        +   D+G DD + KP    E+LARV A  RR     N AE G +
Sbjct: 80  QIPIIMLTARGEEGDKVRALDTGADDYIVKPYSVAELLARVRAHIRR----ANPAEVGEM 135

Query: 132 RVFSDGR-DP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
               D + DP     E  G    L   E R+L   ++  G+   +  +   ++   D  +
Sbjct: 136 LEHGDIKLDPSRMKVERSGTGIKLGPTEFRLLTVFLSRPGRVWTRESLLERVWE-HDLDI 194

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++  V+ H+ +LR+ L+     DP+ + R  GYS+D+
Sbjct: 195 DQRTVDVHVGRLRRALKVNGLADPIRTIRSAGYSLDF 231


>gi|228985707|ref|ZP_04145860.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774102|gb|EEM22515.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 231

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 61  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K+     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 121 PKIEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     D +++ R +GY   I W+
Sbjct: 181 D-SESYVDDNTLSVNTTRVRKKLKTLHIEDAIETIRSVGYRLHITWD 226


>gi|239629145|ref|ZP_04672176.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519291|gb|EEQ59157.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 229

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           LE+ + +RA+S VP+I IS     ++ +   D G DD + KP    E+LAR+    R   
Sbjct: 64  LEIIQEVRAYSSVPIIVISARTMERSKVAALDMGADDYLTKPFGTAELLARIRTALRHSQ 123

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R    N++ + G + +  + R  +V  +   L + E +++  L  N G+ +    I S I
Sbjct: 124 RNVSENSKYDVGGLLIDFERRLVKVNDQEVHLTQIEYKLVSLLAQNAGRVLTYETIISKI 183

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G F ++ +  ++  +++ +R+KL
Sbjct: 184 WGPFADS-DNQILRVNMAHIRRKL 206


>gi|213970103|ref|ZP_03398235.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301381459|ref|ZP_07229877.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061114|ref|ZP_07252655.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato K40]
 gi|213925207|gb|EEB58770.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 227

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 7/159 (4%)

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVS 122
           +RA     P++ IS    +   +     G DD + KP    E+ ARV  + RR   +  +
Sbjct: 67  LRAQGISTPILMISALSDVDERVRGLRGGGDDYLPKPFASDEMAARVEVLLRRSNPVSAA 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
               +   + +    R+    GE   L   E ++LE+LM N G+ + +  IF  ++G  F
Sbjct: 127 KTVLQVADLELNLISREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHF 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     N+++ HI +LRKK+        + + R  GY I
Sbjct: 187 DPGT--NLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|172035886|ref|YP_001802387.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
 gi|171697340|gb|ACB50321.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 5/159 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI ++   +P++ ++   + +  +   D G DD V KP    E+LAR+ A+ RR  V+ N
Sbjct: 66  RIRQSGYTIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDVPELLARIRALLRRGNVAPN 125

Query: 125 R-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   +R+     +     ++  L  +E  +LE  + N    ++++ I   ++  F++
Sbjct: 126 PILEWQQLRLDPSNYEVTYSDKLLHLTPKEYGLLELFLRNENIVLSRSAILDNLWS-FED 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
              E  V+ HI  LRKKLR K+G  P  +++   +GY +
Sbjct: 185 PPSEEAVKVHIKDLRKKLR-KVGAPPDFIETVYGVGYRL 222


>gi|169824609|ref|YP_001692220.1| two-component DNA-binding response regulator [Finegoldia magna ATCC
           29328]
 gi|167831414|dbj|BAG08330.1| two-component DNA-binding response regulator [Finegoldia magna ATCC
           29328]
          Length = 218

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 78/161 (48%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR  S +P I ++ +   +  ++ F S  D  + KP     +  R+ ++ ++  
Sbjct: 60  LDVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVLKVRIESLIKKHY 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N         V       ++ G+   +  +E  IL+Y++ N G+ + + QI  +++  
Sbjct: 120 GNNETFNYKNTEVNFASYTAKLNGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKE 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 180 TDEIPFDRVIDVYIKELRKKLE----LDCIVTIRNVGYKLE 216


>gi|59711133|ref|YP_203909.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Vibrio fischeri ES114]
 gi|59479234|gb|AAW85021.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Vibrio fischeri ES114]
          Length = 226

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           + +I R     P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR    
Sbjct: 64  IKQIRRKEIHSPILILTARGNWQDKVEGLEAGADDYLVKPFQSEELIARLYALARRAAGF 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + ++     I +    +   V G+   L   E  I  YL+ N  K ++K Q   A+Y   
Sbjct: 124 TQSKVTAENIELDIKAKTIHVDGQFLQLTSFEYDIAAYLIKNSLKIISKQQFVDALYQE- 182

Query: 182 DEAVEENVVESHISKLRKKL 201
           D  V+ N +E  IS+LRKK 
Sbjct: 183 DSEVQLNNIEVIISRLRKKF 202


>gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 5/156 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRA 126
           A +  P++ ++   S+   +   +SG DD + KP    E+LARV  I RR  + +S N+ 
Sbjct: 69  AGNATPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRRGLVPLSGNQL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             G + +    R     G    L  +E  +LE  +  +G+ + ++ I S ++ + FD   
Sbjct: 129 SVGDLTLDISRRSARRGGSEIQLTTKEFTLLELFVRRQGEVLPRSLIASQVWDMNFDS-- 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + NV++  + +LR K+ +      + + R +GY +D
Sbjct: 187 DTNVIDVAVRRLRMKVDDGHDIKLIQTVRGMGYRLD 222


>gi|325264508|ref|ZP_08131238.1| transcriptional regulatory protein [Clostridium sp. D5]
 gi|324030170|gb|EGB91455.1| transcriptional regulatory protein [Clostridium sp. D5]
          Length = 223

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 19/202 (9%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-------------GEKVLELP 64
           LF DD + +   N   F E   ++ +   +     L+GK             G+   EL 
Sbjct: 5   LFVDDDIDILNLNHAYFTEHGFAADKASSAKDALLLLGKNAYDCVILDIRMDGQDGFELC 64

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSN 123
           R +R  S +P+I ++      +    F SG DD + KP H +E+  R+ A I+ RL  S 
Sbjct: 65  RTLRDISNIPIIFLTVLTDEASLEQGFLSGGDDYIVKPYHMKELELRIRARIHPRLHHSR 124

Query: 124 NRAETGPIRVF--SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                G  R++   D +   +      L   E +IL++L  ++G    + +I+ A++G  
Sbjct: 125 QGDLQGSSRLYICPDEKQAYIGSSSLDLTISEFQILQFLSNHKGIPYRQEEIYEALWG-- 182

Query: 182 DEAVEENVVESHISKLRKKLRN 203
            E    + ++  I ++R+K++ 
Sbjct: 183 -ERYNTHSIQVLIMRIRRKIKT 203


>gi|319404867|emb|CBI78468.1| two-component response regulator [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 226

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P+I ++   +   T+  F  GV+D V KP     +LAR+ A  R+ + + +  + GP 
Sbjct: 76  RAPIIMMTHCDTDCDTILGFKMGVNDYVTKPFRFSVLLARIRAQLRQYEHNEDSFDLGPY 135

Query: 132 RVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +F        + Q  +  L  +E  IL+YL   R K V++  +   ++G ++  +  + 
Sbjct: 136 -IFKPREKFLIDQQNNIINLTEKETAILKYLYETRDKIVSRETLLEHVWG-YNANIITHT 193

Query: 190 VESHISKLRKKLRNKLGFDPVDSK 213
           +E+HI +LRKK+      DP  +K
Sbjct: 194 LETHIYRLRKKIEK----DPSKAK 213


>gi|300717533|ref|YP_003742336.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299063369|emb|CAX60489.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 235

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L + R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 59  LMLPGMDGLTVCREIRRFSDLPIMMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARV 118

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAK 170
             I +R K +   A+   + V  + R      QG +   P  E R+L+ L    GK  ++
Sbjct: 119 KTILKRCKRTPEEAQKASLLVIDENRFQASWDQGPLDLTP-AEFRLLKTLAQEPGKVFSR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             + + +Y  +   V +  ++SHI  LR+KL
Sbjct: 178 EMLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 207


>gi|317047742|ref|YP_004115390.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316949359|gb|ADU68834.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 222

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ ++  L   GE  + 
Sbjct: 4   LVVEDNALLRHHLAVQLREMGHQVDAAEDAKEADYFLQEHVPDIALVDLGL--PGEDGMS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R  R  + + P++ ++     Q  ++  ++G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  LIRRWRGDAIRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMRRNSG 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++     P +V    R+  +  E   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 HASQIISMSPFQVDLSRRELTINEEQVKLTAFEYTIVETLIRNAGKVVSKDSLMLQLYP- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK+      + +++ R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKILALYPTEVINTVRGQGYRFD 221


>gi|197106109|ref|YP_002131486.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196479529|gb|ACG79057.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 237

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSN 123
           IR  S+ P++ +S        +   D+G DD VNKP+   E+LAR+ A  R   R   S 
Sbjct: 69  IREWSEAPILVLSARDLESEKIAALDAGADDFVNKPVGVGELLARLRASLRGRERRFASQ 128

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
               +G + +    R   VQGE   L  RE  +L  L  + G+ V   Q+ +A++G   +
Sbjct: 129 AMFRSGDLAIDFARRRVTVQGEEVRLTPREYDLLRILARHAGRPVTHRQVIAAVWGAGAQ 188

Query: 184 AVEENVVESHISKLRKKL 201
            V+   V   +++LR+KL
Sbjct: 189 -VDAQFVRVLVAQLRQKL 205


>gi|192362017|ref|YP_001981895.1| DNA-binding response regulator CreB [Cellvibrio japonicus Ueda107]
 gi|190688182|gb|ACE85860.1| two-component response regulator CreB [Cellvibrio japonicus
           Ueda107]
          Length = 240

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + +R  S+VP+I ++   S    +   + G DD V KP   RE+ ARV AI +R + 
Sbjct: 68  EACKQLRRFSEVPVIFLTARGSELDRVVGLEIGADDYVVKPFSPRELAARVKAILKRTRQ 127

Query: 121 ----VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +++  A+      F   ++ +      ++  L R E  +L+ ++   G+  ++ Q+
Sbjct: 128 VGATLASAAADVQDASEFVIDTERKTIHYHQQLLGLTRLEFSLLQAMVMQPGRVFSREQL 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             A+ G+  +A  +  ++ HI  LR KLR  K G +P+ + R  GY+
Sbjct: 188 LDAL-GISTDAGYDRSIDGHIKTLRAKLRALKPGAEPIKTLRGFGYA 233


>gi|161502167|ref|YP_001569279.1| hypothetical protein SARI_00190 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863514|gb|ABX20137.1| hypothetical protein SARI_00190 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P++ ++   ++   +   + G DD + KP    E+ AR+ A+ RR     +  +     
Sbjct: 73  LPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGQVHEVQRLGEL 132

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +F D     +Q +   L  RE+ +L  LM  R + V++ Q+F  ++ L DE   E+ +E 
Sbjct: 133 IFHDEGYFLLQEQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEVSPES-IEL 191

Query: 193 HISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +I +LRKKL+   G D  + + R LGY ++
Sbjct: 192 YIHRLRKKLQ---GSDVRITTLRGLGYVLE 218


>gi|157377522|ref|YP_001476122.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319896|gb|ABV38994.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 108/223 (48%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D A   +  +  F + G ++E  +       L +S + D+  ++  L    G K+L
Sbjct: 4   LLVEDDATTIEYVVKGFMEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQLDGLKLL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
              R     SQ P++ +S    +   +    +G DD + KP    E+L R   + +R   
Sbjct: 64  AALRA--TGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGFS 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++     G + +    R   + G    L  +E ++L+YLM +  + +++T +F A++ 
Sbjct: 122 QPADTELSVGNLVMELLTRKVTLDGTELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVWD 181

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             FD     NV++ HI+KLR+K   +LGF + +++ R  GY +
Sbjct: 182 YHFDP--RTNVIDVHIAKLRRKF-EELGFGELIETVRGAGYRL 221


>gi|167033875|ref|YP_001669106.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860363|gb|ABY98770.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 226

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGP 130
            P++ IS    +   +    +G DD + KP    E+ ARV  + RR  + ++  R +   
Sbjct: 74  TPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPMTQTRLQVAD 133

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
           +++     +         L   E ++LEYLM + G+ + +  IF  ++G  FD     N+
Sbjct: 134 LQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWGYHFDPGT--NL 191

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ HI +LRKK+ +      + + R  GY+I
Sbjct: 192 IDVHIGRLRKKIDSPGQSPLIRTVRGSGYAI 222


>gi|146300797|ref|YP_001195388.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146155215|gb|ABQ06069.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 224

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 11/198 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EK 59
           ++I+D   +     + F D+GV  E  ++     ++Q+  + D    +  L+  G     
Sbjct: 4   LIIEDEQDIAQSIQSYFKDNGVKCETAHN-----YVQAIHKIDNYDYDCILLDLGLPDGD 58

Query: 60  VLELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             ++ R +R+  +   +I IS   +L+T L+ F  G DD + KP H  E+L R+ A+ RR
Sbjct: 59  GFDILRELRSKDKTDGVIIISAKETLETRLESFSLGADDYLTKPFHLAELLVRMQALVRR 118

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +N      IR+    +   V G+   L R+E  +L +L+ N  K ++K  I   +
Sbjct: 119 RNFKGSNSVVFQEIRIEVFTKTVLVNGQKLELTRKELNLLLFLIGNNDKVLSKAAIAEHL 178

Query: 178 YG-LFDEAVEENVVESHI 194
            G + D     + + +HI
Sbjct: 179 SGDMADMLDSHDFIYAHI 196


>gi|92118604|ref|YP_578333.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801498|gb|ABE63873.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 242

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   +L R IRA S VP+I ++     ++ ++    G DD V KP   RE++ R+  I 
Sbjct: 76  GETGFDLARFIRASSSVPIIMLTARHEAESRIEGLQIGADDYVAKPFEPRELVLRIGNIL 135

Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171
           +R      V       GP  V+   R    QG +V  L  RER +L  L A  G+ V + 
Sbjct: 136 KRTMPLPAVRTGSIAFGPY-VYHLERGELRQGDDVVHLTDREREMLRVLAATPGETVRRG 194

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++           V E  V+  I++LR+K+
Sbjct: 195 ELNGG------GTVNERAVDVQINRLRRKI 218


>gi|87119431|ref|ZP_01075328.1| Two component Transcriptional regulator, Winged helix family
           protein [Marinomonas sp. MED121]
 gi|86164907|gb|EAQ66175.1| Two component Transcriptional regulator, Winged helix family
           protein [Marinomonas sp. MED121]
          Length = 239

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 15/161 (9%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R +R   + P++ ++        +   + G DD V+KP+  R +LARV ++ RR      
Sbjct: 70  RSVREGYKAPILMLTARSDDVDQILGLEIGADDYVSKPVKPRVLLARVQSLLRRSIMDVG 129

Query: 120 -KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +   N+ E     GP+ + +  R+  V GE   L   E  +L  L +N G+ +++ +IF
Sbjct: 130 KQTGGNQGEQNLTFGPLVIDNTRREAWVHGEEIELTSAEFDLLWLLASNAGRILSREEIF 189

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
             + G+  +  ++  V+  IS    ++R+K+G DPV  +R 
Sbjct: 190 GELRGIEYDG-QDRSVDVRIS----RIRSKIGDDPVHPRRI 225


>gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 9/205 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++   + + EE L+ +  ++   I   ++       E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDC--AYDGEEALEKAKAQEYDLILLDIMLPKYTGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + ++IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR   S
Sbjct: 64  VCQMIREFSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGKS 123

Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               E   I + +D       R   V G+   L  +E  +LE L  N  K  ++ ++ + 
Sbjct: 124 VKEKEDKNIILKNDMKIDRQSRRVYVDGKEINLTAKEFDLLELLATNPDKVYSREELLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G ++   +   V+ H+ +LR+K+
Sbjct: 184 VWG-YEYPGDARTVDVHVRRLREKV 207


>gi|332654980|ref|ZP_08420722.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516323|gb|EGJ45931.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 230

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 13/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR    N++A
Sbjct: 67  IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNHQA 126

Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
                 +   +++  + R        F LP +E  +L Y   ++GK + K QI+  ++G 
Sbjct: 127 GAMQKLDFDGLQIDLENRSVTTANGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 186

Query: 180 --LFDEAVEENVVESHISKLRKKL 201
              +D++   N++ + IS+LRKKL
Sbjct: 187 EYFYDDS---NIM-AIISRLRKKL 206


>gi|297571688|ref|YP_003697462.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932035|gb|ADH92843.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 227

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 103/242 (42%), Gaps = 45/242 (18%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF------------LIG 55
           RALV D    +     VS+  F +LE +++   SA    SA E              L+ 
Sbjct: 4   RALVVDDEAQM-----VSIVTF-ALETQDFTCESATTPASAWELLQRNHYDLVVLDVLMP 57

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           +G  +    R+  A    P+I ++        +   ++G DD V KP   RE+  R  AI
Sbjct: 58  RGSGIDITRRMRAAGIATPVILLTALGQESDRIAGLEAGADDYVTKPFSPRELALRAQAI 117

Query: 116 YRRLKVSNNRAE-----TGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMA 162
            RR   +  +AE      GP+RV        ++D    E Q EV         IL  L+ 
Sbjct: 118 VRR---ATPQAEVTDITVGPVRVDLHAGRAWYNDALITESQAEVA--------ILGVLVR 166

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           N    VA   + +A +G    +    +V++ + +LRK L    G DP  V S R LGYS+
Sbjct: 167 NPDAVVATRDLVAAAWGKNVHSGGREMVKTTVYRLRKHL-EAAGIDPGIVRSHRGLGYSL 225

Query: 221 DW 222
           D+
Sbjct: 226 DF 227


>gi|255527025|ref|ZP_05393916.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186975|ref|ZP_06855375.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509281|gb|EET85630.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048413|gb|EFG87847.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 11/144 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR H  +P+I +S        +    +G DD + KP +  E+LARV +  RR    NN  
Sbjct: 69  IREHKNMPIIMLSAKGEDMDKIMGLTTGADDYITKPFNPLELLARVKSQLRRYTKLNNAM 128

Query: 127 --------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +     + +V  ++  L RRE  ILE L  NRG   +  +I+  ++
Sbjct: 129 QNINSDIIEIDDLTINVSTHEVKVGEKLINLTRREFDILELLAKNRGIVFSTEKIYERVW 188

Query: 179 GLFDEAVE-ENVVESHISKLRKKL 201
              +E  + +N V  HI K+R+K+
Sbjct: 189 N--EEFYQSDNTVMVHIRKIREKI 210


>gi|229062220|ref|ZP_04199542.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH603]
 gi|228717048|gb|EEL68727.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH603]
          Length = 239

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 21/221 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEK 59
           MFV   DR +    +I L  DD    E   +   +E  Q + A +    + AFL G  + 
Sbjct: 1   MFVKKGDRNM--SHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDL 58

Query: 60  V-----------LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
           +           LE+ RIIR  S VP++ +S   +          G DD + KP    E+
Sbjct: 59  IILDIMMPKLDGLEVVRIIREKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIEL 118

Query: 109 LARV-AAIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMA 162
            ARV A I R  K S   ++   I++     DP     E +G    L  +E  IL+  + 
Sbjct: 119 AARVKAGIRRSTKYSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVK 178

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           N+ +   K QI++ ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 179 NQNRVFTKAQIYTLVWN-EEYYGDDNVINVHMRRLREKIES 218


>gi|42518151|ref|NP_964081.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|41582435|gb|AAS08047.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|329666463|gb|AEB92411.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 235

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121

Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++    E         G + +  +    E  GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 LTQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +      +  ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYV 229


>gi|330900238|gb|EGH31657.1| heavy metal response regulator [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 228

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LK 120
           R+  A   VP++ ++    +   +   + G DD + KP    E+LARV  + RR    L+
Sbjct: 65  RLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGSSSLQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V  +  + G ++V    R     G+   L  +E  +LE LM  +G+ ++K+ I S ++ +
Sbjct: 125 VQTS-LQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQVWDM 183

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 184 NFDS--DTNVIEVAIRRLRAKIDDDFEVKLLHTCRGMGYMLE 223


>gi|324329030|gb|ADY24290.1| two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-HNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223


>gi|315640403|ref|ZP_07895515.1| response regulator [Enterococcus italicus DSM 15952]
 gi|315483841|gb|EFU74325.1| response regulator [Enterococcus italicus DSM 15952]
          Length = 229

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +++ +I+R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 61  MQVVKILRKESQLPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRST 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPE----VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
           ++V+ ++ +   +      RD      + G+   L   E  IL YL+A+   RV +  +I
Sbjct: 121 MQVTADQPDVLEVSSLIINRDSHEVKTLDGKDIQLTALEFGIL-YLLASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
           F  ++   +  V    V  H+S LR K+    G + +    + +GY ID
Sbjct: 180 FERVWKQ-ESVVSAKTVMVHVSHLRDKIEEATGGEKIIQTVWGVGYKID 227


>gi|304313008|ref|YP_003812606.1| Two-component response regulator receiver [gamma proteobacterium
           HdN1]
 gi|301798741|emb|CBL46974.1| Two-component response regulator receiver [gamma proteobacterium
           HdN1]
          Length = 220

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGP 130
           +P++ ++   +    +D   +G DD + KP H+ E+LAR+ AI RR   K  N+    G 
Sbjct: 73  MPVLILTARDAWHERVDGLKAGADDYLGKPFHNAELLARLEAIARRGAGKADNSLHWNGV 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
                     +       L   E R+L YLM N     +KT++   +Y   D+  + NV+
Sbjct: 133 TLDIDQQCAQQAPHSPIQLTAIEFRLLRYLMLNPLHFHSKTRLSEHVYE-EDQIKDSNVI 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E +I++LR+      G D ++++R  GY +
Sbjct: 192 EVYINRLRQ----YFGKDFIETRRGQGYRL 217


>gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 228

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYR----RLKVSNNRAETGPIRVFSDGRDPEVQGEV 146
            + G DD V KP   RE++ARV A+      R + S++    G + + +     +V GE 
Sbjct: 92  LEGGADDYVVKPFSPRELVARVKAVLNRTMPRTEASDSTMTFGELSIDTASHTVKVSGEE 151

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  +E  +L +L +N+G  +++ +I   ++  +D   E+  V++H+  LR  L    G
Sbjct: 152 VSLTPKEFDLLVFLASNKGIALSREKILQKVWN-YDYFGEDRTVDTHVKMLRGHLGKCRG 210

Query: 207 FDPVDSKRFLGYSID 221
           +  + +   +GY  D
Sbjct: 211 Y--IATVWGIGYKFD 223


>gi|295132377|ref|YP_003583053.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980392|gb|ADF50857.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 227

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVF 147
           FD+G DD + KPI  + ++++V A+ RR +     +N  + G I +  D        E  
Sbjct: 98  FDAGADDYITKPIKPKVLVSKVKALLRRFRDEETGSNIVKVGEIVINRDEYKVVKNKEEM 157

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            LPR+E  +L  L +  GK   +  I   ++G  +  V    ++ HI    +KLR K+G 
Sbjct: 158 ILPRKEFELLSLLASKPGKVFKREDILDKVWG-NEVVVGGRTIDVHI----RKLREKIGD 212

Query: 208 DPVDSKRFLGYS 219
           D   + + +GY 
Sbjct: 213 DSFKTVKGVGYK 224


>gi|225567922|ref|ZP_03776947.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM
           15053]
 gi|225163210|gb|EEG75829.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM
           15053]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 15/158 (9%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR    VP++ +S     Q  L  ++ G DD + KP+    + A+V A+ +R    + 
Sbjct: 65  RQIRKSQNVPVLIMSAKSGKQNKLTGYELGADDYMEKPVDPEILSAKVNALLKR----SG 120

Query: 125 RAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           RA+      +G I +    R   ++G+   L  +E  +L   + N GK + K  IF  ++
Sbjct: 121 RAQEEMLLVSGEITLNRKARTVNLRGKPLELNVKEYELLLLFVRNPGKTLRKEYIFGNVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           G  D   E   +  HI  LR K+      +P + KR L
Sbjct: 181 GT-DSFSESQTLTVHIKMLRAKIEE----NPREPKRIL 213


>gi|221311269|ref|ZP_03593116.1| hypothetical protein Bsubs1_18031 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485812|dbj|BAI86887.1| hypothetical protein BSNT_04948 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 248

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-- 114
           G    E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  
Sbjct: 71  GMSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHL 130

Query: 115 --IYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              Y+  + S+N+  T     FS    +  V GE      +  ++L+Y   +    ++K 
Sbjct: 131 KRTYQSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKD 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           QI+  ++G +    + N V  HI KLR+K+ R+    + + + R LGY
Sbjct: 191 QIYEKVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGY 237


>gi|219566942|dbj|BAH04973.1| response regulator transcription regulator [Ralstonia solanacearum]
          Length = 246

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146
           F++GVDD++       E+ ARV  + RR +     A      GP R+    R   V    
Sbjct: 92  FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNEAP 151

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L  RE      L ++ G  +++ QI SA++G  D ++ E  +E HI KLRKKL
Sbjct: 152 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 205


>gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 256

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 9/117 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD-GRDPEVQ-----GEVF 147
           G DD V KP    E++ R+  I RR  V+ + +E   +  + D   D ++      GEV 
Sbjct: 123 GADDYVTKPFSLEEVITRLRVILRR--VAKDDSEESSLITYEDITLDDDMHEVTKAGEVV 180

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
            L   E ++L YLM N    ++K++I   ++  +D   + NVVES++S LR+K+  K
Sbjct: 181 DLSPTEFQLLRYLMVNAEVVLSKSKILDHVWN-YDFGGDGNVVESYVSYLRRKIDTK 236


>gi|154483356|ref|ZP_02025804.1| hypothetical protein EUBVEN_01059 [Eubacterium ventriosum ATCC
           27560]
 gi|149735866|gb|EDM51752.1| hypothetical protein EUBVEN_01059 [Eubacterium ventriosum ATCC
           27560]
          Length = 220

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 3/153 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++   S    +     G DD + KP     +L R+  I++R++  ++R 
Sbjct: 67  IRKVSDVPIIMVTSRTSEVDEVLTMSYGADDFITKPYSPTVLLLRIQNIFKRMEPKSDRI 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               + +           +   L + E  I  YL+ NR K V + ++ + ++   +E + 
Sbjct: 127 RYKDLEINIGKGSISNGSKEINLTKNEMIIFSYLLNNREKIVTRDELMTDLWN-NEEYIN 185

Query: 187 ENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
           +N +  +IS+LR KL +++G+D  +++++  GY
Sbjct: 186 DNALTVNISRLRNKL-SEVGYDKAIETRKGQGY 217


>gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
 gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
          Length = 282

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 24/210 (11%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-V 73
           Y  +   DG   EG   LE   W          A+   L+  G   LE+ R  RA ++  
Sbjct: 72  YEVVHSADGA--EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMTRYT 120

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPI 131
           P+I  S   S    +   + G DD + KP    E++ARV A+ RR+     ++R + G +
Sbjct: 121 PIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRIDAGTL 180

Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            V     DP      V G    L  RE  +L +   + GK  ++  + +A++G   E   
Sbjct: 181 DVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGY- 239

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           E+ V +HI++LR K+      DP +  R L
Sbjct: 240 EHTVNTHINRLRAKIEA----DPAEPVRIL 265


>gi|123443580|ref|YP_001007553.1| DNA-binding response regulator CreB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090541|emb|CAL13410.1| putative response regulator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 12/138 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVF 147
           G DD + KP   RE+ ARV  + RRL+ S + A +  +  F +      G       +V 
Sbjct: 96  GADDYIAKPFSPREVSARVRTVLRRLQKSQSLATSATLHQFGNFTLDEAGARVTYHQQVL 155

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L R E  +L+ L+    +  ++ Q+   ++   +E+ ++  V++HI  LR KLR  + +
Sbjct: 156 WLTRYEYLLLKTLLLAPDRVFSRQQLMDIVWAQAEES-QDRTVDTHIKTLRSKLR--MTY 212

Query: 208 D---PVDSKRFLGYSIDW 222
           D   P+ + R LGYS+ +
Sbjct: 213 DEESPIRTHRGLGYSLTY 230


>gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 243

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+       
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDKNGASG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVIQVATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKL 201
              E  V+  VV+ HIS+LR KL
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKL 213


>gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA
           [Mycobacterium avium 104]
 gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104]
          Length = 228

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 10/147 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173
           K  ++ AE+  +  FSD     V  EV        L R E  +LE L+AN  + + +++I
Sbjct: 120 KPEDD-AESVAM-TFSDLTLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200
              ++G FD     N +E ++  LR+K
Sbjct: 178 LEEVWG-FDFPTSGNALEVYVGYLRRK 203


>gi|129157|sp|P28257|YCF27_GALSU RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|73047|pir||RGKKOR regulatory protein ompR - red alga (Cyanidium caldarium)
           chloroplast
 gi|11279|emb|CAA44458.1| regulatory protein [Cyanidium caldarium]
 gi|254505|gb|AAA10400.1| OmpR-like protein [Cyanidium caldarium]
          Length = 255

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 9/146 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSN 123
           IR  S +P+I ++    +   +   + G DD V KP   +E+ AR+  + RR+     SN
Sbjct: 73  IRKESDIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRRVDKFYFSN 132

Query: 124 NRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +G I     ++  + +      E   L   E  +LE L++N G+ +++T I   ++
Sbjct: 133 TFTNSGIINIGFLKIDINRKQVYKNEERIRLTGMEFNLLELLISNSGEPLSRTTILEEVW 192

Query: 179 GLFDE-AVEENVVESHISKLRKKLRN 203
           G   E  ++  VV+ HIS+LR KL +
Sbjct: 193 GYTPERHLDTRVVDVHISRLRAKLED 218


>gi|319744631|gb|EFV96979.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 221

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P++ ++ +   +  +D F + VD  V KP     + AR+ ++ ++  
Sbjct: 63  LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNF 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   + V  +    ++  E   +  +E  IL+ L+ N G+ + + QI   ++  
Sbjct: 123 GHLEKFEYKNLSVNFNSYTAKINDEKIDVNAKELEILKCLLDNDGQVLTRMQIIDYVWKD 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +E   + VV+ +I +LRKKL+     D + + R +GY ++
Sbjct: 183 SEEIPYDRVVDVYIKELRKKLQ----LDCITTIRNVGYKLE 219


>gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 227

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA  +  P++ +S   ++   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVCRRLRAAGRWSPVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRR-- 118

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ R    E   +R+   GR     G    L  +E  +LEYLM + G+ + +T I   +
Sbjct: 119 GAHERPVVLEVDGLRLDPAGRTVSRDGVPLDLSPKEFALLEYLMRHPGEALRRTAILEHV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    +    NVV+ +++ LR+K+    G   +++ R  GY +
Sbjct: 179 WDFAYDGT-SNVVDQYVAYLRRKIDKPFGTSQLETVRGAGYRL 220


>gi|257465004|ref|ZP_05629375.1| transcriptional regulatory protein [Actinobacillus minor 202]
 gi|257450664|gb|EEV24707.1| transcriptional regulatory protein [Actinobacillus minor 202]
          Length = 221

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA 126
           + ++ +P++ ++   +L   +  F++G DD + KP    E++ R+ A+ RR  +  ++  
Sbjct: 68  KENNHIPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRRSHQQVSSEI 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + + S  R   + GE   L  +E R+LE    ++ + + ++ I   +Y  +D  V 
Sbjct: 128 VIGDLVIDSHTRRVTLNGEDISLTAKEFRLLELFAHHKDRVLPRSLIEEKLYS-WDNEVS 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N +E +I  LRK    KLG   V +   +GY +
Sbjct: 187 SNALEVYIHNLRK----KLGKSWVKTVHGVGYKL 216


>gi|296135753|ref|YP_003642995.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295795875|gb|ADG30665.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 242

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 17/217 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           R L ++G+IA      V+++G + L     L  +   D+  ++A L G+ G  VL     
Sbjct: 35  RGLGENGFIA-----DVAVDGTDGLH----LALTQPYDLIVLDAMLPGRDGWSVLS---E 82

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           +RA    P++ ++    +   +   + G DD + KP    E+LARV ++ RR +    + 
Sbjct: 83  LRARQTTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGVTRMPDV 142

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
            E   +RV    +  E  G+   L  +E  +L  L    G+ +++T I   ++ + FD  
Sbjct: 143 MEVADLRVDMHRQRAERSGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWDMNFDS- 201

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + NVV+ HI +LR KL        + + R +GY ++
Sbjct: 202 -DTNVVDVHIRRLRSKLDEPFPAPLLHTVRGVGYVLE 237


>gi|238926849|ref|ZP_04658609.1| two component response regulator [Selenomonas flueggei ATCC 43531]
 gi|238885381|gb|EEQ49019.1| two component response regulator [Selenomonas flueggei ATCC 43531]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDP 140
           S++  +   D+G DD + KP    E+LAR+ A+ RR   ++ +   E G  ++       
Sbjct: 83  SVEDRVKGLDAGADDYLVKPFEFSELLARLRALGRRSTQRIQHEVDEIGGFKLNRTANIL 142

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           E  G++  L  RE ++ + L  N G  V +  I   I+GL +  V  N ++S++  LRKK
Sbjct: 143 EKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRIWGL-EADVSSNNIDSYMKMLRKK 201

Query: 201 LRNKLGFDPVDSKRFLGYSID 221
           L        + + R +GY ++
Sbjct: 202 LDAAGEEASIKTIRGVGYKLE 222


>gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 233

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 13/150 (8%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R   ++ P++ ++   +    +     G DD V KP    E+ AR+ A+ RR  
Sbjct: 68  EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR-- 125

Query: 121 VSNNRAETGPIRV-FSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  P R+ F+D   D E       G+   L   E ++L YLM N  + ++K QI
Sbjct: 126 --TANGDQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              ++  +D   ++N+VES+IS LR+K+ N
Sbjct: 184 LDHVWN-YDFRGDDNIVESYISYLRRKVDN 212


>gi|229824857|ref|ZP_04450926.1| hypothetical protein GCWU000182_00206 [Abiotrophia defectiva ATCC
           49176]
 gi|229790860|gb|EEP26974.1| hypothetical protein GCWU000182_00206 [Abiotrophia defectiva ATCC
           49176]
          Length = 226

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VPL+ IS        +     G DD + KPI+ + + A++ A+ RR   S + A
Sbjct: 66  IREISKVPLMFISSKSEDIDIVQAMQFGGDDYIVKPINIQIVRAKIVALLRR---SYDFA 122

Query: 127 ET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E       G I++       E  G+   L R E  ILE L  ++G    + +I    +  
Sbjct: 123 EETDYLAFGNIKLLLSAAKLEFMGKAAELTRTELMILETLFKDKGAVSKRDKIMDKCWQE 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            +  +++N +  ++++LRKKL  ++G D  + +K+ +GY ++
Sbjct: 183 -ENFIDDNTLAVNMTRLRKKLA-EIGLDGFIQTKKGIGYFLN 222


>gi|227549025|ref|ZP_03979074.1| possible response regulator [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078879|gb|EEI16842.1| possible response regulator [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 27/178 (15%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R +R    +P+I ++   +++  +   + G DD + KP    E+LARV    
Sbjct: 60  GADVLEQLRALR--ETLPIIVLTARTNIEDRIRSLEGGADDYMPKPFQFAELLARV---- 113

Query: 117 RRLKVSNNRAET------GPIRVFS-----DGRDPEVQ-GEVFP-LPRRERRILEYLMAN 163
            RL++++  A +      G  R+       D R   V+ G  +  L RRE  +LE LM +
Sbjct: 114 -RLRLADRAASSEDSPTDGGFRLSRGDLTLDLRTQRVKVGSTWKDLSRREVGLLETLMRH 172

Query: 164 RGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G+ +++ Q+ S ++G+ FD     NVV+  +  LRK    K+G + V++ R  GY +
Sbjct: 173 PGQILSRAQLLSMVWGMDFDPG--SNVVDVFVRALRK----KIGAEKVETIRGSGYRL 224


>gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKL 204


>gi|41407093|ref|NP_959929.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118466690|ref|YP_880417.1| KDP operon transcriptional regulator KdpE [Mycobacterium avium 104]
 gi|254774017|ref|ZP_05215533.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|41395444|gb|AAS03312.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167977|gb|ABK68874.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           avium 104]
          Length = 226

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           +R     P+I +S        ++  D+G DD V KP    E LAR+ A  RR   ++   
Sbjct: 67  LRGWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTAASEME 126

Query: 126 ---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               ET    V    +     G    L   E  +LE L+ NRGK V + ++   ++G   
Sbjct: 127 QPVVETESFTVDLAAKKVTKNGSEVHLTPTEWGMLEVLVRNRGKLVGREELLKEVWGPA- 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            A E + +  ++++LR+KL N    DP   K  L  S
Sbjct: 186 YATETHYLRVYLAQLRRKLEN----DPSHPKHLLTES 218


>gi|83747868|ref|ZP_00944901.1| HrpG [Ralstonia solanacearum UW551]
 gi|207739208|ref|YP_002257601.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|83725515|gb|EAP72660.1| HrpG [Ralstonia solanacearum UW551]
 gi|206592581|emb|CAQ59487.1| response regulator protein [Ralstonia solanacearum IPO1609]
          Length = 245

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146
           F++GVDD++       E+ ARV  + RR +     A      GP R+    R   V    
Sbjct: 92  FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNETP 151

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L  RE      L ++ G  +++ QI SA++G  D ++ E  +E HI KLRKKL
Sbjct: 152 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 205


>gi|332523446|ref|ZP_08399698.1| transcriptional regulatory protein WalR [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314710|gb|EGJ27695.1| transcriptional regulatory protein WalR [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 236

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 13/155 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 V------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                         N     G +++  D    +  G+   L  RE  +L +L  + G+ +
Sbjct: 121 TIETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214


>gi|325696360|gb|EGD38251.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
          Length = 234

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N  + G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E +++E+LM N  K ++  +IF  ++    DE ++E  V  +IS LR+KL+
Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWANDEDEDLDEGFVWIYISYLRQKLK 204


>gi|310779946|ref|YP_003968278.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749269|gb|ADO83930.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 222

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 3/160 (1%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ RI+R       +I +S    +Q  ++  D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LEVCRILRREKNPAYIILLSAKDQVQDKVEGLDAGADDYLTKPFVFAELLARIRAVLRRN 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   N  E   + V    R+ +  G+   L  +E  +LEY + N+   + +T I   ++
Sbjct: 120 SEDKENIIEAKGLTVNLLNREVKRGGKDIELTLKEFSLLEYFIRNKNLVLTRTMIAEKVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + D   + NVV+ +I+ LRKK+        + + R +GY
Sbjct: 180 NI-DFLTDTNVVDVYINHLRKKIDKDFDDKLIYTVRGVGY 218


>gi|307687807|ref|ZP_07630253.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
          Length = 218

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR+ S VP+I I+   +    L     G DD + KP + + +LAR+ ++ +R   + N  
Sbjct: 63  IRSFSTVPIIFITSRDTNVDELMSITLGGDDFITKPYNAQILLARINSLLKRSYPNENAG 122

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   I++       E + +   L + E +IL YL+ N+G+ V +  I      L+D 
Sbjct: 123 EFIEYNGIKLNILSSKVEYEDKEIELTKNELKILHYLLINKGRIVTRVDIMEY---LWDS 179

Query: 184 A--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A  V +N +  +I++LR K  +    + + +KR  GY +
Sbjct: 180 ALFVNDNTLTVNITRLRNKFEDIGVKEFIKTKRGQGYIV 218


>gi|293374354|ref|ZP_06620681.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292647017|gb|EFF65000.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 230

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ ++ Y         F +G DD + KP  + ++L RV A+ RR    ++  
Sbjct: 67  IRQKSFVPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALLRRAYQYHSTT 126

Query: 127 ET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G + V  +     ++G+   L   E  IL  L+ +R K  +  QI+ +I+
Sbjct: 127 QVKVEPTITIGDLVVDLNSTRVILEGKEVSLTTTEYEILRLLITHRKKIFSMEQIYQSIW 186

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
               + + +N V  H+  LRKK+
Sbjct: 187 NDSGQVIGDNAVMVHVRNLRKKI 209


>gi|266621124|ref|ZP_06114059.1| DNA-binding response regulator RegX3 [Clostridium hathewayi DSM
           13479]
 gi|288867229|gb|EFC99527.1| DNA-binding response regulator RegX3 [Clostridium hathewayi DSM
           13479]
          Length = 229

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 10/150 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G     L + +R  + +P++ IS   S    L   + G DD + KP     +LA+V A+ 
Sbjct: 58  GRSGFSLCKKLREQTDIPILFISARTSDDDILTALNIGGDDYITKPYTLSVLLAKVKAVL 117

Query: 117 RRLKVSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +R   S    E  P+R+             V G+   L   E R+L YL  N G+ V K 
Sbjct: 118 KRCARS---GEAVPLRIADVEIDLSAHKVTVGGKPVKLKEMEFRLLTYLAQNLGRVVTKE 174

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++   ++   D  V E  +  HI  LR+K+
Sbjct: 175 ELLENVWP--DPYVGEGTLSVHIRHLREKI 202


>gi|228951142|ref|ZP_04113258.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808552|gb|EEM55055.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N   +     +  D       V  E   L   E  +L   + +    +++ Q+   I+G
Sbjct: 119 TNEHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220


>gi|229180716|ref|ZP_04308054.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228602694|gb|EEK60177.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 248

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 78  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 137

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 138 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 195

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 196 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 238


>gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
 gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
          Length = 250

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 12/161 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE+V    R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++
Sbjct: 75  GERVC---RAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALF 131

Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR   ++       + G + +   G    V+G+   L   E ++L  L  + G+   + +
Sbjct: 132 RRAHQADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRME 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +   + G +D    E  ++SH+    K LR KLG DP   K
Sbjct: 192 LVEKVLG-YDFEGYERTIDSHV----KNLRAKLGDDPKKPK 227


>gi|169349770|ref|ZP_02866708.1| hypothetical protein CLOSPI_00508 [Clostridium spiroforme DSM 1552]
 gi|169293845|gb|EDS75978.1| hypothetical protein CLOSPI_00508 [Clostridium spiroforme DSM 1552]
          Length = 227

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 10/163 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R  R  +  P+I ++   S    L   + G DD V KP +   +LAR+ A+ +R    
Sbjct: 69  LCREYRKIANKPIIIVTSRNSELDELMCINYGADDFVTKPYNPLILLARIEAVLKR---- 124

Query: 123 NNRAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N  E   I    +  D     +    +V  L + E +I  YL+++RG  +++ ++ S +
Sbjct: 125 TNPKEELTINYQDICLDVSKSSIIKNNQVVDLSKNELKIFYYLLSHRGMIISREKLMSYL 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   D  V++N +  +I++LRKKL +    D + +KR  GY I
Sbjct: 185 WD-SDMFVDDNTLTVNINRLRKKLEDVGLKDVILTKRKQGYII 226


>gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 223

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKL 204


>gi|313898763|ref|ZP_07832297.1| putative transcriptional regulatory protein CusR [Clostridium sp.
           HGF2]
 gi|312956345|gb|EFR37979.1| putative transcriptional regulatory protein CusR [Clostridium sp.
           HGF2]
          Length = 222

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 3/134 (2%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A  Q+P+I I+   S+Q  +     G DD + KP    E+ ARV ++ RR   S      
Sbjct: 67  AQLQIPVIFITAKGSVQDRVKGLHMGADDYLVKPFAVDELTARVESVLRRYHKSMQDIHV 126

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             + + +  R  E +     L ++E  +L YL+ N+   + +  ++  ++   +E  E+ 
Sbjct: 127 LDVTIHTATRLVEKENRTIALTKKEYELLLYLVQNKNIALYRDTMYEKVW--HEEEFEQT 184

Query: 189 -VVESHISKLRKKL 201
             ++ HI +LRKKL
Sbjct: 185 RTLDLHIQRLRKKL 198


>gi|300722371|ref|YP_003711657.1| response regulator in two-component regulatory system with KdpD
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628874|emb|CBJ89457.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 231

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 16/163 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L R +R  S +P+I +S   + Q  +   D+G DD ++KP    E+LARV    RRL 
Sbjct: 66  IDLIREVRQWSNIPIIVLSARDNEQDKVAALDAGADDYLSKPFGINELLARVRVALRRLS 125

Query: 121 VSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +   ++  P+  FSD        R  + Q E+   P  E R+L  L+ N GK + +  +
Sbjct: 126 KA---SQFNPVIYFSDIQVDLVNRRVLKGQNELHLTP-IEYRLLTELITNSGKVLTQRYL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            + ++G     VE N    ++      LR KL  DP   K  L
Sbjct: 182 LNHVWG--PNYVEHN---HYLRIYMGHLRQKLEADPARPKYLL 219


>gi|262274265|ref|ZP_06052076.1| DNA-binding response regulator KdpE [Grimontia hollisae CIP 101886]
 gi|262220828|gb|EEY72142.1| DNA-binding response regulator KdpE [Grimontia hollisae CIP 101886]
          Length = 225

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +RA S+ P++ ++        +   ++G +D ++KP   RE++AR+  + R L  ++  +
Sbjct: 68  VRASSKTPILILTARDQEDEKIRLLEAGANDYLSKPFGVRELIARIKVLVRDLVNTDTLS 127

Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E   +++        + GE   L ++E   +E LMA  G+ V ++++ + I+G   E
Sbjct: 128 DILEYNRLKINKSTHQAWIDGEEVSLTKKEFAFIEKLMAPPGRLVKQSELLTTIWGQSHE 187

Query: 184 AVEENVVESHISKLRKKLRN 203
             + + +   +S+LRKKL +
Sbjct: 188 N-DTHYLRILVSQLRKKLHD 206


>gi|261251207|ref|ZP_05943781.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260938080|gb|EEX94068.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 219

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 107/222 (48%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E F+S    +  Q   + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECFHSETIADVAQYWDKADLVILDRQL-PDGDSVT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            LP   +   +VP+I ++   +++  +   D+G +D + KP    E+ AR+ A  R  + 
Sbjct: 62  HLPEW-KNIKEVPVILLTALVTVKDKVMGLDAGANDYLTKPFAEAELFARIRAQLRAPEG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + +++  T  + +    R+ + + E   L R E  +L +L +N G+   + ++   ++
Sbjct: 121 DAIDDSKVTTEHLIIDKATREVQYKDEAITLTRTEFDLLLFLASNLGRVFTRDELLDHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 G-YNHFPTTRTVDTHVLQLRQKLP---GLE-IETLRGVGYKM 217


>gi|256424555|ref|YP_003125208.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256039463|gb|ACU63007.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 231

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 10/171 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+LE   I +   Q  +I IS   S +  +    +G DD + KP +  E+ AR+ ++ 
Sbjct: 59  GSKLLE--EIKKRDKQEGVIIISARQSYEDKIHALQNGADDYITKPFYLPELGARIFSVI 116

Query: 117 RRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT---- 171
           RR K +N N    G + V    +   +      L R+E  +L Y + N+ K ++K     
Sbjct: 117 RRRKYNNSNIIRQGALTVDLLAKTVYINELPVLLTRKEFDLLIYFIGNKNKVLSKQELAE 176

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I GL D   + NV+ +HI  L+KKL+     + + +    GY  D+
Sbjct: 177 QLSGDIAGLRD---DHNVIYAHIKNLKKKLQEGGAGNYLKTIYATGYKWDF 224


>gi|229098996|ref|ZP_04229931.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-29]
 gi|228684494|gb|EEL38437.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-29]
          Length = 230

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G    L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRA 126
           A S +P+I I+        +   + G DD + KP   RE++ARV A+ RR  LK  +   
Sbjct: 74  AISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVLRRTALKPVDKCY 133

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +  D  +    GE   L  +E  +L+ L+ NRG+ + +  +   I+G ++   E
Sbjct: 134 VFGQVSIDFDKHEVIKNGEKVELTLKEFELLKMLIKNRGRVMTRDFLLDKIWG-YEYVGE 192

Query: 187 ENVVESHISKLRKKLRNKLGFDP----VDSKRFLGY 218
              V+ HI  LR+K+ +   FD     +++ R +GY
Sbjct: 193 TRTVDVHIRHLRQKIED---FDKKPKYIETIRGIGY 225


>gi|300705095|ref|YP_003746698.1| response regulator transcriptional regulator protein [Ralstonia
           solanacearum CFBP2957]
 gi|299072759|emb|CBJ44112.1| putative response regulator transcription regulator protein
           [Ralstonia solanacearum CFBP2957]
          Length = 246

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP H  E+ ARV A+ RR   +  +      GP       R   + GE   L 
Sbjct: 95  GADDYIAKPFHIPELRARVEALLRRAYPVPYAGTPFAVGPYHFNPQRRQVTLHGEHLALT 154

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
             E ++   L AN G+ +++  IF  ++G  + A     ++SH+S++R KL      +PV
Sbjct: 155 GIEFQLAMLLFANVGRTLSRDHIFGQVWGR-NSAEYTRTIDSHVSRIRLKLH----VEPV 209

Query: 211 DSKRFL-----GYSID 221
           +  R       GY +D
Sbjct: 210 NEVRLAAVYKHGYRLD 225


>gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 15/157 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+   IR H   P+I ++        +  F++G DD + KP   RE++ RV A+ RR  
Sbjct: 64  IEVCEEIRKHKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSS 123

Query: 119 -LKVSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             K       T  + VF      +D       G+   L  +E  +L YL  +  K  A+ 
Sbjct: 124 STKFLQTETTTKDVLVFPHLTIDNDAHRITADGKHINLTPKEYELLHYLAQSPDKVFARE 183

Query: 172 QIFSAI--YGLFDEAVEENVVESHISKLRKKLRNKLG 206
           Q+   +  Y  F +      V++HI +LR+KL NK+ 
Sbjct: 184 QLLKDVWNYEFFGDL---RTVDTHIKRLREKL-NKVS 216


>gi|225850705|ref|YP_002730939.1| two component transcriptional regulator, winged helix family
           [Persephonella marina EX-H1]
 gi|225645599|gb|ACO03785.1| two component transcriptional regulator, winged helix family
           [Persephonella marina EX-H1]
          Length = 214

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 7/147 (4%)

Query: 56  KGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           KGE++L   R IR     VP++ ++    ++     F+ G DD + KP   +E+L R+ A
Sbjct: 58  KGEEIL---RDIRNRGVDVPVLILTAKSDIRDKEVCFNLGADDYLTKPFDPKELLLRLKA 114

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + +R K      + G I +  D +    +GE   L R    +L  L+ NRG  V   +I 
Sbjct: 115 LSKR-KHREYCVKIGDITIDIDNQMVYKKGEEVKLSRTAWELLYLLVKNRGSIVPTERIL 173

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
           + ++G  D+ V + +V ++I +LRK L
Sbjct: 174 AYVWG--DKPVGDEIVRTYIKELRKIL 198


>gi|254445907|ref|ZP_05059383.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198260215|gb|EDY84523.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 223

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 3/132 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
            ++G DD + KP   +E+LARV A+ RR+   V +N  E G + +    R     G+   
Sbjct: 91  LNAGADDYLTKPFDMKELLARVEALGRRVLPGVDDNILEAGDVVLDVIHRVATRNGDRIE 150

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L  RE  +L+ L+   G+  ++ ++F  I+G  ++  E   VE  + +LRKKL       
Sbjct: 151 LSPREFSLLQVLIREPGRTFSRGELFERIWG-REQTYEAKTVEIFVMRLRKKLDVPGKPS 209

Query: 209 PVDSKRFLGYSI 220
            +++ R +GY +
Sbjct: 210 AIETVRGIGYKL 221


>gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 225

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 85/163 (52%), Gaps = 4/163 (2%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L R +R+   Q P++ ++   ++   +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 60  ISLCRRLRSQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRRG 119

Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             S     T G + +  +  +   Q +   L  +E ++LE+ + +  +   +TQI   ++
Sbjct: 120 DSSLPPVLTWGNLSLNPNTCEVFYQEQPLSLSPKEYKLLEFFLRHPHRVFNRTQILDHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L ++  EE  V++HIS LR+K++   G  D +++   LGY +
Sbjct: 180 PL-EQLPEEATVKAHISSLRQKIKAVGGVPDLIETVYGLGYRL 221


>gi|196036865|ref|ZP_03104252.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195990518|gb|EDX54499.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 254

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 97  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 156

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 157 IQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 215

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 216 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 251


>gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
 gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 16/170 (9%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           DV+ ++  +   G    E+ R IR  +S + +I ++        ++    G DD V KP 
Sbjct: 49  DVAVLDVMM--PGMDGFEVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPF 106

Query: 104 HHREILARVAAIYRRLKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERR 155
              E++ARV A++RR+ V+  +A+        +GP  +    R     G V  L + E +
Sbjct: 107 SPSELVARVDALHRRVTVAAEKAQAPAPSELKSGPFVLNMKSRTVSKNGRVLELTQVEYQ 166

Query: 156 ILEYLMANRGKRVAKTQIFSAIY--GLFDEAVEENVVESHISKLRKKLRN 203
           ILEY   N    + +  I + ++  G F +     +V+ +I +LR KL +
Sbjct: 167 ILEYFFNNPNTALGRQDILNKVWGEGYFGDI---KIVDVNIRRLRMKLED 213


>gi|85716031|ref|ZP_01047008.1| Two-component transcriptional regulator, winged helix family
           protein [Nitrobacter sp. Nb-311A]
 gi|85697229|gb|EAQ35110.1| Two-component transcriptional regulator, winged helix family
           protein [Nitrobacter sp. Nb-311A]
          Length = 242

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 12/150 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   +L R IRA S VP+I ++     +  ++    G DD + KP   RE++ R+  I 
Sbjct: 76  GETGFDLARSIRASSPVPIIMLTALHEAENRIEGLQIGADDYLAKPFEPRELVLRIGNIL 135

Query: 117 RR-LKVSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171
           +R + +   R+E+   GP  V+   R    QG +V  L  RER +L  L A  G+ V + 
Sbjct: 136 KRTIPLPAMRSESIAFGPY-VYHLERGELRQGDDVIHLTDREREMLRMLAATPGETVRRG 194

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ +         V E  V+  I++LR+K+
Sbjct: 195 ELNAG------GTVNERAVDVQINRLRRKI 218


>gi|327396126|dbj|BAK13548.1| transcriptional regulatory protein QseB [Pantoea ananatis AJ13355]
          Length = 219

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 18/204 (8%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPR------IIRAHSQ---VPLIG 77
            +LE   W     R+ V A  A+  G    VL    LPR      + RA  +    P++ 
Sbjct: 18  QALEAAGWSVDWVRDGVYAQNAWSEGGYSCVLLDLGLPRDDGLQVLRRARGRGDATPVLI 77

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSD 136
           ++   ++   +   D G DD + KP   +E++AR+ AI RR   S +    +G +++   
Sbjct: 78  LTARDTVAQRVQGLDYGADDYLLKPFDLQEVMARMRAITRRHHGSADSVLGSGDVQLDML 137

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
            R+   +G+   L  RE  +L  L+   G  +++ Q+ + IYG + E V  N V+  I  
Sbjct: 138 TREVLYKGQREQLTAREYALLYALLERPGAILSREQLENRIYG-WGEEVSSNAVDVLIHG 196

Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220
           +R+KL N    D + + R LG+ +
Sbjct: 197 MRRKLDN----DVIRNVRGLGWRV 216


>gi|291279262|ref|YP_003496097.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
 gi|290753964|dbj|BAI80341.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
          Length = 215

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 9/151 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGP 130
             P+I I+    L      F  G DD + KP   +E+L R+ A+ +R   + N+   +  
Sbjct: 71  NTPVIIITAKFDLSDKETCFLLGADDYITKPFEPKELLLRINAVTKRYFDNQNKISISDE 130

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +    +   +  E+ PL ++E  +L  L  NRGK V+   I + ++       +EN V
Sbjct: 131 IVIDITQQSLFINNELIPLTKKEWELLYVLAKNRGKVVSNECILNYVW-------QENPV 183

Query: 191 ESH-ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  I    KKLR  LG D +++ +  GY +
Sbjct: 184 GTESIRTYIKKLREILGKDLIETHKGRGYRL 214


>gi|269119755|ref|YP_003307932.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268613633|gb|ACZ08001.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 217

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 27/215 (12%)

Query: 10  LVKDGYI---ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           LVK+GYI   A  G++G+ L       F EW       D+  ++  +  K     E+ R 
Sbjct: 20  LVKNGYIVREAADGEEGLDL-------FYEW-----NPDLVLLDVMMPKKDG--YEVCRA 65

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I++    P++ ++     +  +   + G DD + KP   + +  R+  +     + +   
Sbjct: 66  IKSEKTTPVLMLTAKTQEEDEIRGLEIGADDYIRKPFSLKILELRLKNL-----LGDEIY 120

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G  R   + ++  +  ++  LP +E  +L YL  N  K  ++ QI + ++ L  E+ +
Sbjct: 121 TIGNFRFLKNEKNVYLNEKIVDLPPKEYDLLFYLAKNHSKIFSREQILNNVWDLLCES-D 179

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              V++HI  LRK    K+G + + + +  GY  +
Sbjct: 180 PRTVDTHIKNLRK----KIGHEYITTVKGFGYKFE 210


>gi|229198569|ref|ZP_04325271.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228584851|gb|EEK42967.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 STAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQADQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|255305488|ref|ZP_05349660.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile ATCC 43255]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR     P+I +S   S    +     G DD V KP   RE++AR+ A  RR K
Sbjct: 60  FEVCQAIRDDVLCPVIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREK 119

Query: 121 VSN-----NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            S      N+  T   G + ++   R  ++ G+   L + E  I+E L  + G+  ++ Q
Sbjct: 120 RSQYINEENKRSTLYFGKLWLYMKERAIKIDGKDIDLTKIEYGIVELLALHAGQVFSREQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I+  ++G   E     VVE  + K+R K 
Sbjct: 180 IYEKVWGCDSEGDSSTVVE-RVKKIRAKF 207


>gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
 gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 14/219 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V+ D++ +VK    +L  DD   +E   + + EE L+   R++   I   ++      
Sbjct: 5   VLVVDDEKLIVKGLRFSLEQDD---MEVDCAYDGEEALEMVKRKEYDMILLDVMLPKYDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR+ 
Sbjct: 62  FEVCRQIRDFSDVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIMRRVA 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIF 174
             +  + +G + V  D +       VF       L  +E  +LE L  N  K  ++  + 
Sbjct: 122 KKDGMSASGKVVVKGDLKIDCESRRVFSGDRELNLTAKEFDLLELLAMNPNKVYSRESLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           + ++G ++   +   V+ HI    ++LR K+  +P D K
Sbjct: 182 NIVWG-YEYPGDARTVDVHI----RRLREKIEVNPSDPK 215


>gi|197336013|ref|YP_002156198.1| FeuP [Vibrio fischeri MJ11]
 gi|197317503|gb|ACH66950.1| FeuP [Vibrio fischeri MJ11]
          Length = 218

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 24/207 (11%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRI--------IRAHS-QVPLIGI 78
           +LE  +W+   +++ V A+      + + +   L LP++        IR  +   P+I +
Sbjct: 19  TLESADWVPELSQDGVDALYRATTEEWDAIVLDLGLPKLNGLTVLKSIRDENINTPVIIL 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS-DG 137
           S   +L   ++  ++G DD + KP    E++AR+ A  RR   S N +    I   S D 
Sbjct: 79  SARDTLSQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPILKIGDLSLDT 136

Query: 138 RDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHI 194
           R  +V  Q +   L   E +++ Y M N  K +++T +   IY   FD   + N VE  I
Sbjct: 137 RSSKVLWQDQAVSLTALEYKVVAYFMHNPDKVISRTTLVEHIYKQDFDR--DSNTVEVFI 194

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++RKK+   +    + + R LGY ++
Sbjct: 195 GRIRKKIAPNI----IKTVRGLGYQLN 217


>gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 231

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  ++  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQMISTYEIELMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N    + E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSPKNEDGMIRIRSAEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|118443810|ref|YP_877372.1| DNA-binding response regulator [Clostridium novyi NT]
 gi|118134266|gb|ABK61310.1| DNA-binding response regulator [Clostridium novyi NT]
          Length = 227

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 21/191 (10%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELP-----RIIRA----HSQVPLIGI 78
           +L FE +   +A    +AIE F     + V   L LP     ++I A    +++VP+I +
Sbjct: 19  NLMFENYEVITAECGKTAIELFQTQSPDLVVLDLMLPDIDGFQVIHAIQEINNEVPIIVL 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRA----ETGP 130
           S    +   L     G DD + KP   RE++ R+ AI RR+     +SN +     E G 
Sbjct: 79  SAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRINKAKLLSNKKQSSIIEKGF 138

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I++  D R   +  +       E  +L  ++ N  K   + ++   I+G +D +     V
Sbjct: 139 IKIMKDERRVFIDSKEVIFTHIEFEMLVLMVKNSYKVFTREELLDKIWG-YDFSGNTRAV 197

Query: 191 ESHISKLRKKL 201
           + HI ++RKKL
Sbjct: 198 DIHIKRIRKKL 208


>gi|94971080|ref|YP_593128.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553130|gb|ABF43054.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 226

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 9/163 (5%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+   ++ R IR  S  VP++ +S    +   +   + G DD V KP   RE+LARV   
Sbjct: 57  GKSGQDICREIRGFSPNVPILVLSAASDVVDKVLLLELGADDYVTKPFSPRELLARVRTA 116

Query: 116 YRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            RRL  S ++ E      I+V     +    G+   L  +E ++L + + N+ + V++ +
Sbjct: 117 LRRLIPSIDKQEVYNFDEIQVDFGKMELLRSGQPVALTPQEFKMLRFFLNNKDRVVSRNE 176

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           + + ++G +        V++HI +LR+KL      DP D   F
Sbjct: 177 LLNEVWG-YHSYPTTRTVDTHILRLRQKLER----DPADPIHF 214


>gi|3688536|emb|CAA07190.1| HrpG [Ralstonia solanacearum]
          Length = 255

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146
           F++GVDD++       E+ ARV  + RR +     A      GP R+    R   V    
Sbjct: 101 FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNEAP 160

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L  RE      L ++ G  +++ QI SA++G  D ++ E  +E HI KLRKKL
Sbjct: 161 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 214


>gi|50118973|ref|YP_048140.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609499|emb|CAG72932.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 220

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 11/204 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G++  GFN   F E    +     +  +A ++      ++
Sbjct: 4   LLIEDDRLIGDGLKA-----GLNKLGFNIDWFTEGKAGATALKAAPYDAVVLDLSLPGMD 58

Query: 63  LPRIIRAHSQV----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              I+R   Q     P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR
Sbjct: 59  GMDILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRR 118

Query: 119 LKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    T G + +    R   +  E   L  RE  +LE  + N  + + + Q+   +
Sbjct: 119 RHGQLQPVLTHGAVSLEPSSRSVTLNSEPLILKSRELALLELFLLNPNRVLTRAQLEEKL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           YG +D+ V  N VE HI  LRKKL
Sbjct: 179 YG-WDDDVSSNAVEVHIHHLRKKL 201


>gi|85715372|ref|ZP_01046354.1| Two-component transcriptional regulator, winged helix family
           protein [Nitrobacter sp. Nb-311A]
 gi|85697793|gb|EAQ35668.1| Two-component transcriptional regulator, winged helix family
           protein [Nitrobacter sp. Nb-311A]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 11/155 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           Q P++ +S    +   +    +G DD + KP    E+LARV  + RR      RAE    
Sbjct: 72  QTPVLILSALGQVDDRVKGLRAGGDDYLPKPYSFAELLARVEVLSRR---HVGRAEETVY 128

Query: 132 RVFSDGRD----PEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           RV     D      V+G E   L  RE R+LEYLM + G+ V +T +   ++   FD   
Sbjct: 129 RVGDLELDRLSHRVVRGVEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFDP-- 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + NV++ HIS+LR K+        + + R  GY I
Sbjct: 187 QTNVIDVHISRLRSKIDKGFEQPLLHTIRGAGYMI 221


>gi|301054747|ref|YP_003792958.1| putative response regulator [Bacillus anthracis CI]
 gi|300376916|gb|ADK05820.1| predicted response regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 223

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 67  IRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 127 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 186 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|296116750|ref|ZP_06835357.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295976672|gb|EFG83443.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 233

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 8/153 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S   ++   +    +G DD + KP    E+ AR+ A+ RR    NN  ET   
Sbjct: 81  RAPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARLEALLRR---PNNSRETMLH 137

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GP+ +    R     GE+  L  RE R+LEYLM    + + +  +   ++  +    + 
Sbjct: 138 AGPLAMDLIERTVTRNGELIELLPREFRLLEYLMRRPDQVLTRNMLLEDVWN-YRFIPQT 196

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N+V+ HI KLR+K+        + S R  G+ +
Sbjct: 197 NLVDVHIGKLRRKVDEPGAPSLIQSIRGAGFML 229


>gi|269966641|ref|ZP_06180721.1| putative transcriptional regulator CpxR [Vibrio alginolyticus 40B]
 gi|269828763|gb|EEZ83017.1| putative transcriptional regulator CpxR [Vibrio alginolyticus 40B]
          Length = 221

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R I      P++ ++      + LD + +G D  + KP +  E+L R+ AI RR+ 
Sbjct: 61  MQVARRICQRFATPILMLTALNDENSMLDGYQAGADQYIGKPFNVAELLMRIKAILRRVG 120

Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   R      ++  SD      Q    PL   E  +L YL+ N+G  ++K ++ + +  
Sbjct: 121 LERQRQTMCSTVQTISD------QLNSLPLTSTEAELLSYLVKNQGVVISKAELQTEVLK 174

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
                 + N ++ HIS +R+KL    L    + + R  GYS
Sbjct: 175 KELSPFDRN-LDMHISNIRRKLVEAGLSKQHIKTFRGKGYS 214


>gi|268610730|ref|ZP_06144457.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I     +P+I +S        L  F+ GVDD V KP   +E++ARV  + +R     + A
Sbjct: 67  IHKSKNIPVIMLSARGEEYDKLFGFEIGVDDYVVKPFSPKELMARVKVVLKRSARQESDA 126

Query: 127 ETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +        + V   GR+  V GE   +  +E  +L YL+ N+   + + ++   ++G +
Sbjct: 127 QLDKYVFEGLEVDISGREVYVNGEKASMTPKEYDLLFYLVKNKNIALTRDKLLEEVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206
           D   ++  V++HI    K LRN LG
Sbjct: 186 DFFGDDRTVDTHI----KMLRNSLG 206


>gi|302878154|ref|YP_003846718.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302580943|gb|ADL54954.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 220

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 20/167 (11%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+    + +P+I I+    ++  +   D G DD + KP    E+LAR+ A+ RR    
Sbjct: 63  LRRLRLGGNTMPVIIITARDGVEDRIKGLDFGADDYLVKPFDVNELLARLRAVIRR---- 118

Query: 123 NNRAETGPIRVFSDGR---DP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +  P+   S+GR   DP     +    +  L  RE  +L  L+   G  + + ++ 
Sbjct: 119 -QGGQAAPL--LSNGRVTLDPASHQAQCDDTLVTLSAREFALLHALLLRPGAILTRAELE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             IYG ++E VE N V+  I  +RK    KLG D + + R  G+ ++
Sbjct: 176 ERIYG-WNEEVESNAVDFLIHGIRK----KLGADAIKNVRGAGWMVE 217


>gi|237756293|ref|ZP_04584848.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691541|gb|EEP60594.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 220

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 12/187 (6%)

Query: 23  GVSLEGF------NSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPL 75
           G+  EGF      N    EE+L +   E V  ++  L GK G  +LE  R        P+
Sbjct: 19  GLEEEGFLVDLVSNGATAEEYLNTENYE-VIVLDLMLPGKDGLSILESLR--NRGICTPV 75

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVF 134
           + ++   S++  +   ++G DD + KP   +E++AR+ A+ RR   VS      G + V 
Sbjct: 76  LILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYHNVSKGIVSFGDVEVD 135

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
              ++ +V+G+   L   E ++L  L     + ++KT I  ++YG ++ + + NV+E  I
Sbjct: 136 LVNQNVKVKGKDVELTAMELKLLMMLALKSNRILSKTYIEQSLYG-WEGSPDSNVIEVLI 194

Query: 195 SKLRKKL 201
           S+LRKKL
Sbjct: 195 SRLRKKL 201


>gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 11/144 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR    N   
Sbjct: 69  VREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKMNGRI 128

Query: 124 -----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N  E G +++        V  E   L  RE  ILE L  N+G  ++  QI+  ++
Sbjct: 129 SAQNENEVEIGDMKINVTTHKVTVADEEVKLTPREFAILELLARNKGMVMSAEQIYERVW 188

Query: 179 GLFDEAVE-ENVVESHISKLRKKL 201
              +EA + +N V  HI K+R+K+
Sbjct: 189 K--EEAFQSDNTVMVHIRKIREKI 210


>gi|229013739|ref|ZP_04170867.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides DSM 2048]
 gi|229135371|ref|ZP_04264160.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST196]
 gi|228648067|gb|EEL04113.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST196]
 gi|228747408|gb|EEL97283.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides DSM 2048]
          Length = 239

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 31/226 (13%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEK 59
           MFV   DR +    +I L  DD    E   +   +E  Q + A +    + AFL G  + 
Sbjct: 1   MFVKKGDRNM--SHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDL 58

Query: 60  V-----------LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
           +           LE+ RIIR  S VP++ +S   +          G DD + KP    E+
Sbjct: 59  IILDIMMPKLDGLEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIEL 118

Query: 109 LARV-AAIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMA 162
            ARV A I R  K S   ++   I++     DP     E +G    L  +E  IL+  + 
Sbjct: 119 AARVKAGIRRSTKYSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVK 178

Query: 163 NRGKRVAKTQIFSAI-----YGLFDEAVEENVVESHISKLRKKLRN 203
           N+ +   K QI++ +     YG      ++NV+  H+ +LR+K+ +
Sbjct: 179 NQNRVFTKAQIYTLVWNEEYYG------DDNVINVHMRRLREKIES 218


>gi|254482005|ref|ZP_05095247.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037695|gb|EEB78360.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 231

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R IR  +  P++ ++        +   + G DD + KP + RE+ AR+ AI RR +
Sbjct: 62  LDVLRKIRDFTDTPVLMLTARGEDTDRIVGLEMGADDYLPKPCNPRELAARLRAILRRSQ 121

Query: 121 VSN-NRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +++ N ++T    G   + S  R    +G    L   E  +L  L+   GK V K  +  
Sbjct: 122 LTDTNESQTEVSVGSTTLNSANRTAIHRGVSLNLTSAEFNLLMILLKRAGKIVDKDTLSQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              G    A + + V+ H+SK+R+KL N  G + + S R LGY
Sbjct: 182 EGLGRPLSAYDRS-VDVHVSKIRRKLANAGGKELIVSVRGLGY 223


>gi|149179235|ref|ZP_01857800.1| two-component response regulator [Planctomyces maris DSM 8797]
 gi|148841914|gb|EDL56312.1| two-component response regulator [Planctomyces maris DSM 8797]
          Length = 244

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 24/218 (11%)

Query: 1   MFVLIDDRALVK--------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           + V+ D++AL +        +GY  L  +DG +   +    F+E  +S  +E V  +   
Sbjct: 3   LLVVEDEKALAQGLKFNFEQEGYTVLTAEDGPTALNY----FQECYESD-KESVDLVVLD 57

Query: 53  LIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G    E+ + IR   +V P++ +S     +     FD G D  + KP    E+L+R
Sbjct: 58  LMLPGMSGYEIAKEIRRIDEVVPILVLSARELSEDKAYAFDCGTDQYMTKPFALPELLSR 117

Query: 112 VAAIYRRLKV-----SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
           V  + +R  +     S +R      E G + V  +  + EV GE   L   E R+L+Y +
Sbjct: 118 VKNLLKRKSLVKPALSQSRKLPALYEFGNVIVDFESFEIEVDGERKSLTNLELRLLKYFI 177

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
            + G  + ++QI   ++G     V    +++ + +LRK
Sbjct: 178 EHEGMVLTRSQILEDVWGEQSAFVTTRTIDNFVLRLRK 215


>gi|83942173|ref|ZP_00954635.1| two component transcriptional regulator, winged helix family
           protein [Sulfitobacter sp. EE-36]
 gi|83847993|gb|EAP85868.1| two component transcriptional regulator, winged helix family
           protein [Sulfitobacter sp. EE-36]
          Length = 218

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 10/152 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ ++    +   ++  + G DD V KP    E+ AR+  + RR   +N  A+   +
Sbjct: 72  RTPILILTARDKVSDRIEGLNRGADDYVIKPFDLDEVKARIHTVCRR--SANQFAQMVQL 129

Query: 132 R-VFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             V  +  D  V     P  L  +E  + E L+  + + V K  + +AIY  + E VE N
Sbjct: 130 HDVVVNLSDHTVMRAEQPVRLTAKEWGVFETLLRRKPQIVPKESLEAAIYD-YGEEVESN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E HIS    +LR KLG D + + R LGY++
Sbjct: 189 AIEVHIS----RLRTKLGKDLIATHRGLGYAL 216


>gi|324993651|gb|EGC25570.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324995037|gb|EGC26950.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|327462920|gb|EGF09241.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327474524|gb|EGF19929.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N  + G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E +++E+LM N  K ++  +IF  ++    DE ++E  V  +IS LR+KL+
Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204


>gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 238

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 16/155 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R     P++ ++        +   + G DD + KP   RE+LARV A+ RR+++
Sbjct: 63  ELCRRLRQEMNTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAMLRRVRM 122

Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                          S  R  +G + +    R+  + G V  +  +E  +L +LM +RG+
Sbjct: 123 IREEMQKSEESTQKESEKRLLSGNLELNLARREVRLNGVVVAVKPKEFELLHFLMKHRGQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +++  +   ++G +D   +   V+ HI  LR+K+
Sbjct: 183 VLSRDYLLKELWG-WDYFGDSRTVDVHIRWLREKI 216


>gi|257791686|ref|YP_003182292.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317487847|ref|ZP_07946440.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|257475583|gb|ACV55903.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316913122|gb|EFV34638.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 248

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 7/160 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R + AH+  P + ++        +     G DD + KP   +E++ R+AA+ RR   + N
Sbjct: 88  RQLPAHTSTPALFLTAKDEPFDRVSGLTLGADDYIAKPFLPQELVLRIAAVLRRCYAAEN 147

Query: 125 R-AETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              E    RV F+        G+  PL  +E  IL  L  N G+ V    +  A +G   
Sbjct: 148 PLLELAASRVNFATAEVERADGQTVPLTAKEHEILSVLARNAGRIVTIDSLCEACWG--T 205

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220
               EN + +HI +LR+K+       PV   + R LGY +
Sbjct: 206 SFGYENSLMAHIRRLREKIEADPS-APVSLVTARGLGYKL 244


>gi|188011573|gb|ACD45086.1| NisR [Lactococcus lactis]
          Length = 173

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 9/148 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR     P+I +S   + +  ++    G DD + KP   ++++A+V A  +R + 
Sbjct: 24  EICKRIRREISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 83

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S  R + GPI  + + R   V G+  PL  RE  ILE L     K   K  I
Sbjct: 84  NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTKEDI 143

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  +Y  +  A+  ++ E +I ++R K 
Sbjct: 144 YDDVYDEYSNALFRSISE-YIYQIRSKF 170


>gi|160884401|ref|ZP_02065404.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
 gi|156110140|gb|EDO11885.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 8/166 (4%)

Query: 61  LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           LEL R+ R     Q+P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR
Sbjct: 61  LELCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 120

Query: 119 LK-VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K V +N      + +  + R  + +G++   L  +E R+LEY M ++G  +++  +   
Sbjct: 121 NKEVPSNLLTCDNLILDCNTRKAK-RGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKD 179

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   FD     N+V+ +++ LR K+        + +   LGY ++
Sbjct: 180 VWDKNFD--TNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 223


>gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
 gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
          Length = 231

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 106/224 (47%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            ++++D A + D  +    ++G  +E          L +S   D+  ++ +L +  G ++
Sbjct: 5   ILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L   R  + +   P++ ++   ++   +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 65  LR--RFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPG 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S    E   IR   + +     G    L  +E  +L + + N GK +++T+I+  ++ 
Sbjct: 123 QASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVW- 181

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D++ +   N +E H+ +LR KL    G   + + R  GY ++
Sbjct: 182 --DDSYDGLSNTLEVHVKELRHKL-EACGPRVIQTLRGRGYVLE 222


>gi|91785110|ref|YP_560316.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689064|gb|ABE32264.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 266

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 66  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 124

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR   V  +V  L  RE  +LE L+   G+ V+K Q
Sbjct: 125 -----GAGGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+    G   + + R LGY ++
Sbjct: 180 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 225


>gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 989

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L R IR+++ Q+P++ ++   S        D+G DD + KP    E++AR+ A+ RR 
Sbjct: 60  ISLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRP 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V++    E+G +R+     +      + PL  +E  +LE  + N  +  +   I   ++
Sbjct: 120 AVTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR 202
             +++  +E  V +HI  LR+KL+
Sbjct: 180 S-YEDTPQEEAVRTHIKGLRQKLK 202


>gi|125974039|ref|YP_001037949.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|281418193|ref|ZP_06249213.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714264|gb|ABN52756.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|281409595|gb|EFB39853.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  S VP+I +S   S    +   + G DD V KP     +LA++ A+ RR     +  
Sbjct: 67  IRDISNVPVIFLSSRDSNMDIVMAVNMGGDDYVTKPFSMDVLLAKMQALIRRAYSYGQFD 126

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               E  G I   +DG      G+   L + E +IL+ LM N+GK V++ +I   ++   
Sbjct: 127 GQIIECNGAILNTNDGT-LTYNGKNIELTKNEFKILQLLMRNKGKIVSRDKIMRVLWE-S 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  + EN +  ++++LR KL +    D + +K+  GY I
Sbjct: 185 EYFISENTLTVNVNRLRSKLEDIGLKDLIVTKKSQGYMI 223


>gi|332298252|ref|YP_004440174.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332181355|gb|AEE17043.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 244

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 27/177 (15%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------- 118
           A + VP++ ++    +   +   D G DD + KP    E+LAR+ A+ RR          
Sbjct: 69  AKNNVPVLLLTAKDEIADKVSGLDHGADDYMTKPFSTDELLARIRALTRRRGEVITGCLE 128

Query: 119 ------------LKVSNNRAETGPIRVFSDGRDPEVQ---GEVFPLPRRERRILEYLMAN 163
                       L     R+     R   D RD + Q   G    L  +E RI+E L+ N
Sbjct: 129 YGDLALDPKTCELCTDARRSGIDARRSGIDARD-DCQIPSGGKIKLSLKEYRIMEMLVQN 187

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + + K +I   ++G  D   E N +E  IS LRKK+R       + + R +GYS+
Sbjct: 188 PNQILTKERILEKVWG-GDSDAEYNNLEVFISFLRKKMRFIGSKAEIKTSRGIGYSL 243


>gi|253989244|ref|YP_003040600.1| DNA-binding transcriptional regulator BaeR [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780694|emb|CAQ83856.1| transcriptional regulatory protein baer [Photorhabdus asymbiotica]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L + R IR  S +P+I ++        L   + G DD + KP   REI+ARV
Sbjct: 59  LMLPGCDGLSVCREIRCFSDIPIIMVTAKTEEIDRLLGLEIGADDYICKPYSPREIVARV 118

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I RR     +  +   +++         + ++  L   E R+L+ +    G+ +++ Q
Sbjct: 119 KTILRRCYRPQDIVKQSDLQIDEACFQARYRDKILDLTPVEFRLLKTMAIRPGRVLSRDQ 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + + +Y      V +  ++SHI  LR+KL
Sbjct: 179 LLNNLYD-DHRIVTDRTIDSHIKNLRRKL 206


>gi|228919505|ref|ZP_04082869.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840148|gb|EEM85425.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 225

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N   +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 119 TNEHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K+ F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220


>gi|229156833|ref|ZP_04284920.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228626753|gb|EEK83493.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 225

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|229160173|ref|ZP_04288173.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623307|gb|EEK80133.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 21/230 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 7   LLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTGQHNYDLILLDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  +
Sbjct: 65  DICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARIKAQLRR-HM 123

Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +    +   S GR        +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQTVSHESNVHSISFGRFEINQHSAELTVDGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +  ++G      ++N V  HI KLR+K+      DP     + + R LGY
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQ----DPSKPEYIKTVRGLGY 229


>gi|289208144|ref|YP_003460210.1| PhoB family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288943775|gb|ADC71474.1| two component transcriptional regulator PhoB, winged helix family
           [Thioalkalivibrio sp. K90mix]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 3/131 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130
           +P+I ++     +  +   D G DD V KP   RE++AR+ A+ RR     S    E   
Sbjct: 77  IPIIMLTARGEEEDRVRGLDVGTDDYVTKPFSPRELVARIKAVLRRTAPITSEEPVEVEG 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +R+          GE   +   E  +L + M ++ +   + Q+   ++G  +  VEE  V
Sbjct: 137 LRLDPVSHRVSGHGEALSMGPTEYNLLHFFMTHQDRVFTRGQLLDQVWGT-NVYVEERTV 195

Query: 191 ESHISKLRKKL 201
           + HI +LRK L
Sbjct: 196 DVHIRRLRKAL 206


>gi|169828806|ref|YP_001698964.1| sensory transduction protein [Lysinibacillus sphaericus C3-41]
 gi|168993294|gb|ACA40834.1| Sensory transduction protein [Lysinibacillus sphaericus C3-41]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 3/155 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           RA++++PL+ ++        +  F+ G DD + KP    E+  RV A+ +R ++  ++  
Sbjct: 69  RANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIGYSQTI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + G I +           +   LP +E  +L  L    G+   + Q+   I+G+ D A +
Sbjct: 129 QLGAITLDRQTFKIMTGTDAITLPLKEFELLYKLAETPGQVYTREQLIDQIWGI-DYAGD 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++ HI +LR++      F  +++ R LGY ++
Sbjct: 188 NRTIDVHIKRLRERFALIADFH-IETIRGLGYRLE 221


>gi|154250109|ref|YP_001410934.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154045|gb|ABS61277.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 18/157 (11%)

Query: 70  HSQVPLIGISDYPSLQTTLDFF---DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
            ++ P IGI    +  T +D     + G DD V KP + RE++ARV A  RR K      
Sbjct: 67  KNEFPDIGIIVISAKSTDIDKILGIELGADDYVGKPFNPREVVARVKAYLRRTKGIKEVI 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAI----YGLF 181
             G + ++         G+   L  +E  IL+ L+A R  RV ++ +I   I    Y +F
Sbjct: 127 RYGKLEIYPSDYVVLYDGQKIDLTAKEFEILK-LLAQRPDRVYSREEILETIWTDEYDVF 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D      VV+ HI+ LRK    KLG D + + R +GY
Sbjct: 186 D-----RVVDVHINSLRK----KLGKDWIITVRGVGY 213


>gi|52142292|ref|YP_084536.1| response regulator [Bacillus cereus E33L]
 gi|51975761|gb|AAU17311.1| response regulator [Bacillus cereus E33L]
          Length = 225

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 69  IRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|114320264|ref|YP_741947.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226658|gb|ABI56457.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VPLI ++     +  +   + G DD V KP   RE++AR+ A+ RR   +   A   P+ 
Sbjct: 77  VPLIMLTARGEEEDKVRGLEVGADDYVTKPFSPRELIARIRAVLRR---TTPDAGDQPVE 133

Query: 133 VFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
           V     DP        G    +   E R+L + M ++ +   + Q+   ++G  +  VEE
Sbjct: 134 VEGLTLDPVSHRVSGNGRTLDMGPTEFRLLHFFMTHQERVYTRGQLLDNVWGT-NVYVEE 192

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             V+ HI +LRK L        V + R  GY
Sbjct: 193 RTVDVHIRRLRKVLAESGHDHLVQTVRGTGY 223


>gi|260170315|ref|ZP_05756727.1| two-component system response regulator [Bacteroides sp. D2]
 gi|298481287|ref|ZP_06999480.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|315918677|ref|ZP_07914917.1| two-component system response regulator [Bacteroides sp. D2]
 gi|298272491|gb|EFI14059.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|313692552|gb|EFS29387.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR  +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR-- 119

Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V+ N  E     V++D R      D E       L  +E  +L Y++ N  + +++ +I 
Sbjct: 120 VAGNAQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIA 179

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++   FD     N ++ +I+ LRKK+        + +K  +G+
Sbjct: 180 EKVWNTHFDTGT--NFIDVYINYLRKKIDRDFEPKLIHTKAGMGF 222


>gi|228961124|ref|ZP_04122750.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228798567|gb|EEM45554.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 232

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +RA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQVRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|228954723|ref|ZP_04116745.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229071949|ref|ZP_04205159.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229081705|ref|ZP_04214198.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228701550|gb|EEL54043.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228711108|gb|EEL63073.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228804921|gb|EEM51518.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 248

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 78  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 137

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 138 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 195

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 196 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 238


>gi|229169264|ref|ZP_04296976.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH621]
 gi|228614205|gb|EEK71318.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH621]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G+   L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATETTEKRIQIGDLTIDPINFTVEKNGKHLKLTLKEFEILKLFLKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|221315596|ref|ZP_03597401.1| hypothetical protein BsubsN3_17947 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320512|ref|ZP_03601806.1| hypothetical protein BsubsJ_17915 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324796|ref|ZP_03606090.1| hypothetical protein BsubsS_18066 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 293

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-- 114
           G    E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  
Sbjct: 116 GMSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHL 175

Query: 115 --IYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              Y+  + S+N+  T     FS    +  V GE      +  ++L+Y   +    ++K 
Sbjct: 176 KRTYQSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKD 235

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           QI+  ++G +    + N V  HI KLR+K+ R+    + + + R LGY
Sbjct: 236 QIYEKVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGY 282


>gi|221632648|ref|YP_002521869.1| KDP operon transcriptional regulatory protein kdpE [Thermomicrobium
           roseum DSM 5159]
 gi|221156381|gb|ACM05508.1| KDP operon transcriptional regulatory protein kdpE [Thermomicrobium
           roseum DSM 5159]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 20/153 (13%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP+I +S   +    +  F+ G DD V KP +  E++AR+ A+ RR   
Sbjct: 64  ELLQDIRLRSAVPVIIVSARAAPDDRIRGFELGADDFVAKPFYLDELVARIEAVLRRTSP 123

Query: 122 SNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + +R+          +    RVF DG+  EV+     L R E  +LE L    G+ V  +
Sbjct: 124 TVDRSPLLQYDRVTIDLANRRVFVDGQ--EVR-----LSRTEWSLLEQLARQPGRVVRHS 176

Query: 172 QIFSAIYGLFDEAVEEN-VVESHISKLRKKLRN 203
           ++ S ++G   E + E   + + +S+LR KLR+
Sbjct: 177 ELLSHVWG--PEFIRETYYLRTWVSRLRAKLRD 207


>gi|199597921|ref|ZP_03211346.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258507247|ref|YP_003169998.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258538434|ref|YP_003172933.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591178|gb|EDY99259.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257147174|emb|CAR86147.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150110|emb|CAR89082.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259648613|dbj|BAI40775.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR +  V+N+
Sbjct: 67  VRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQNEVTNS 126

Query: 125 RA---ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179
                E GP+ +  D  +   + G+   L   E  IL YL+A+   RV +  +IF  ++ 
Sbjct: 127 EPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 186 Q-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|157164687|ref|YP_001466781.1| extracellular solute-binding protein [Campylobacter concisus 13826]
 gi|112800153|gb|EAT97497.1| DNA-binding response regulator [Campylobacter concisus 13826]
          Length = 220

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 17/145 (11%)

Query: 83  SLQTTLDF---FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD--- 136
           SL T  D    + SG DD + KP   +E+L R+ A+ +R   S+   E   I++  D   
Sbjct: 81  SLNTIDDLEKGYKSGCDDYLKKPFELKELLIRMQALIKR-NFSHQNGE--DIKILDDLCF 137

Query: 137 ---GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
               +     GE   +  +E  +L   + N+GK + K +IF+ I+  FDE   E  +  +
Sbjct: 138 HPQSKTLSKNGENVNISSKESDLLALFLQNKGKILTKDEIFNKIWK-FDEEPSELSLRVY 196

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGY 218
           I    K LR  LG D + +KR  GY
Sbjct: 197 I----KNLRQILGKDAILNKRGDGY 217


>gi|126700252|ref|YP_001089149.1| two-component response regulator [Clostridium difficile 630]
 gi|254976231|ref|ZP_05272703.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093618|ref|ZP_05323096.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255101806|ref|ZP_05330783.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307673|ref|ZP_05351844.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255315366|ref|ZP_05356949.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518031|ref|ZP_05385707.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651147|ref|ZP_05398049.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|255656615|ref|ZP_05402024.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|260684213|ref|YP_003215498.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687872|ref|YP_003219006.1| two-component response regulator [Clostridium difficile R20291]
 gi|296449929|ref|ZP_06891693.1| response regulator [Clostridium difficile NAP08]
 gi|296878311|ref|ZP_06902319.1| response regulator [Clostridium difficile NAP07]
 gi|306520997|ref|ZP_07407344.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115251689|emb|CAJ69524.1| Two-component response regulator [Clostridium difficile]
 gi|260210376|emb|CBA64753.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213889|emb|CBE05918.1| two-component response regulator [Clostridium difficile R20291]
 gi|296261199|gb|EFH08030.1| response regulator [Clostridium difficile NAP08]
 gi|296430609|gb|EFH16448.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 88/170 (51%), Gaps = 10/170 (5%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R IR+      +P+I ++        ++  + G DD + KP   +E+LAR++++ R
Sbjct: 62  IEVLRKIRSDKDLKNIPVIMLTAKNMENDKVEGLEIGADDYITKPFSIKELLARISSVLR 121

Query: 118 RLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R  ++     NN   TG +++     +     E   L  +E  +L+ L+ N+GK +++  
Sbjct: 122 RYNLTSLGEENNILTTGNLKLDLSKHEVTKGSEKIELTLKEFELLKLLIQNKGKVLSRNY 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +   I+G ++   E   V+ HI  LRKK+ ++   +  +++ R +GY ID
Sbjct: 182 LLDKIWG-YEYYGETRTVDVHIRYLRKKIEDEDKSEKYIETIRGVGYKID 230


>gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus]
          Length = 239

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 34/220 (15%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D Y A  G+D V L       +EE        D+  ++  L G+    +E+ R +R   +
Sbjct: 34  DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKYE 79

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--- 129
           +P+I ++   S    +   + G DD V KP   RE++ARV A  RR   S    +TG   
Sbjct: 80  MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR-HYSQPAQDTGNVT 138

Query: 130 ------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  I ++ D    + +GE   L  RE  +  YL  + G+ + +  +   ++G +D 
Sbjct: 139 NEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDY 197

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
             +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 198 FGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 233


>gi|330875757|gb|EGH09906.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965575|gb|EGH65835.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 222

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 24/227 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++         +  +S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGL--PGMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ +  R +    P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRGNGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+ +    + G   V  DG D ++    F       R+L Y M + G+ ++K+
Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGADIQLTSAEF-------RLLRYFMLHPGQILSKS 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   +Y   +E  + NV+E H++ LR+    KLG   ++++R  GY
Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVIETRRGQGY 215


>gi|325068515|ref|ZP_08127188.1| winged helix family two component transcriptional regulator
           [Actinomyces oris K20]
          Length = 219

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 9/150 (6%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P+I ++   S+   +   + G DD + KP    E+LAR+    R    + ++       +
Sbjct: 75  PVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDATAPDQMRLTHRDM 134

Query: 134 FSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190
             D   R   ++G    L  RE  + E  M + G+ +++ Q+ S+++GL FD     NVV
Sbjct: 135 VLDLRARTLMLEGRTVELSAREFALAETFMRHPGQVLSREQLLSSVWGLDFDPG--SNVV 192

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E ++S     LRNKLG   V++ R +GY +
Sbjct: 193 EVYVS----YLRNKLGRQRVETVRGMGYRL 218


>gi|313683188|ref|YP_004060926.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156048|gb|ADR34726.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
          Length = 220

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPI 131
            P++  S    ++  ++  D G DD + KP  + E+LAR+ A+ RR         + G +
Sbjct: 73  TPVLLFSSKKEIEDKVEALDGGADDYLEKPFSNIELLARIRALLRRESTQKQTHLKLGKL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V    R  ++      L  +E  +LE+L+ N    + + QI   +   FD+    N+V+
Sbjct: 133 SVDFSSRSVQIDNTPVKLSAKEFELLEFLLLNANTVLTRYQISEHLSRDFDQIATSNIVD 192

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +HI  LRKKL      D + + R +GY I
Sbjct: 193 AHIKNLRKKLD---ADDLIQTVRGVGYMI 218


>gi|300694173|ref|YP_003750146.1| transcriptional regulatory protein, probable baer protein, response
           regulator for mdtABCd and acrd [Ralstonia solanacearum
           PSI07]
 gi|299076210|emb|CBJ35523.1| Transcriptional regulatory protein, probable baeR protein, response
           regulator for mdtABCD and acrD [Ralstonia solanacearum
           PSI07]
          Length = 222

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 3/170 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G+  LE+ R +RA S +P++ ++        L   + G DD + KP   RE++AR+
Sbjct: 54  LMLPGKDGLEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARI 113

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             I RR++    + ++  +++ +      ++G+   L   E R+L  L    G+ +++  
Sbjct: 114 KTILRRVQRGGAQPDS-LLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRAN 172

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   IY      V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 173 LLEQIYD-DHRIVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 221


>gi|290955975|ref|YP_003487157.1| two component system transcriptional regulator PhoP [Streptomyces
           scabiei 87.22]
 gi|260645501|emb|CBG68589.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL
           POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22]
          Length = 247

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 12/164 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+  A  + P++ ++        +     G DD V+KP    E+L R+ AI RR    + 
Sbjct: 76  RLRAAGDECPILFLTARTGTDDRIQGLSVGGDDYVSKPFSIEEVLLRIEAILRRTAPVDA 135

Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +  ++D        +    G+   L   E ++L YL++N G+ V+K QI   ++
Sbjct: 136 ALPPPSVLRYADLELDEGAHEVHRAGQYIALSPTEFKLLAYLLSNAGQVVSKVQILDHVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
             +D A +  ++E+++  LR+K+     F+P  + + R +GY +
Sbjct: 196 S-YDFAGDARIIETYVRYLRRKIDC---FEPPLIQTVRGVGYCL 235


>gi|229514729|ref|ZP_04404190.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229348709|gb|EEO13667.1| transcriptional regulator [Vibrio cholerae TMA 21]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L L + IRA  +QV ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR 
Sbjct: 60  LALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   L+ ++       +RV+   +  E       L  +E  ILE  +   G   ++
Sbjct: 120 IQTHTCNKLRFADLELCLSTMRVYRADQPIE-------LTAKEISILELFLRKPGHIFSR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +I + ++G+  + +  N+V+ ++ +LRKK+        + +KR +GY +
Sbjct: 173 ERILANVWGIHQDPL-TNIVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|228910275|ref|ZP_04074092.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228849335|gb|EEM94172.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 252

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 82  RQIRTISNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 141

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 142 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 199

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 200 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 242


>gi|167565733|ref|ZP_02358649.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis
           EO147]
 gi|167572829|ref|ZP_02365703.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis
           C6786]
          Length = 227

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 25/221 (11%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           + L + G+IA + +DGV+  G +  E E++       D+  ++  L G  G  VLE    
Sbjct: 18  KGLTEAGFIADWVEDGVT--GLHQAETEDY-------DLIILDVMLPGHDGWTVLER--- 65

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R     P++ ++    +   +   + G DD V KP    E++ARV +I RR        
Sbjct: 66  LRRERSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR----GQAR 121

Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           E+  +RV         R    QG+V  L  +E  +L  LM   G+ + +  I S ++ + 
Sbjct: 122 ESSILRVADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDMN 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           F+   + NVV++ I +LR K+ +      + + R +GY ++
Sbjct: 182 FNS--DTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|115360988|ref|YP_778125.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115286316|gb|ABI91791.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 13/139 (9%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGE 145
            ++G DD ++KP    E+ ARV A+ RR  V+ N     PIR      DP     +++G 
Sbjct: 92  LEAGADDYLSKPFRAEELAARVNALLRR--VARNVKRDEPIRAGEYLLDPVHRAVKLRGN 149

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L  +E +++  L  N GK +++ Q+ +  +G  +   E   +++HI ++R+KL  KL
Sbjct: 150 TIELTTKEFQLVACLFNNIGKIMSREQLATTAWG-RELGTESRSLDTHIYRIRQKL--KL 206

Query: 206 GFDP---VDSKRFLGYSID 221
           G +    + +   LGY +D
Sbjct: 207 GIENGLRLSAIYTLGYRLD 225


>gi|229118027|ref|ZP_04247387.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-3]
 gi|228665476|gb|EEL20958.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-3]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G    L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|160880125|ref|YP_001559093.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428791|gb|ABX42354.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 240

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 11/166 (6%)

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E+  E+ + IR  S VP++ IS        +  F  G DD + KP   +E+  R+ AI R
Sbjct: 65  EEGYEVCKKIRKSSNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRIKAILR 124

Query: 118 RLKVSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R    +           GP ++  +  +    GE+  L  +E ++  YL  +  + ++K 
Sbjct: 125 RSSYHDEEENKSTILNLGPFQIDEEKIEVRKNGELIELKPKEYKMFLYLAKHPNQIMSKE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           ++ S ++G  D    +N +  HI KLR+K+      DP + K  L 
Sbjct: 185 KLCSEVWGE-DYIGFDNTIMVHIRKLREKIEK----DPSNPKHILN 225


>gi|225155322|ref|ZP_03723815.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224803929|gb|EEG22159.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 242

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 20/173 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  S VP++ ++   +    +   + G DD V KP   RE+ ARV AI RR   V+N  
Sbjct: 68  IRRCSSVPILFLTARNNEIDRVVGLEMGGDDYVAKPFSPREVAARVRAILRRGPAVTNAN 127

Query: 126 AETGPIRVFSDGRDPEVQGEVFP----------------LPRRERRILEYLMANRGKRVA 169
           A+ G     +    P   G+ F                 L R E R+ + L++  G+  +
Sbjct: 128 ADAGVTVNTNASAKPHDNGQRFTVDDTRFQIRFLDTPLDLTRIEFRLFKVLLSQPGRVFS 187

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDP-VDSKRFLGYSI 220
           + Q+ +A +    EA  +  V++H+  +R KLR      DP + + R LGYS+
Sbjct: 188 REQLLTAAWDE-PEASLDRTVDAHVKTIRAKLRAVTNEADPIIQTHRGLGYSL 239


>gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 713

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           +E L+ +   D   I   ++  G    E+ + IRA + +P++ +S        +     G
Sbjct: 520 DEGLKQALHGDYDLIILDIMLPGMNGFEICKQIRAVNNIPILFVSAKKEDIDKIRGLGLG 579

Query: 95  VDDVVNKPIHHREILARVAAI---YRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
            DD + KP    E++ARV A    Y RL   K +NN      I + +  R   V GE   
Sbjct: 580 ADDYITKPFSPSELVARVKAHLSRYERLASNKPTNNMLSIHGITIDTSARKVFVNGEEVA 639

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
              +E  +L + + +  + ++K Q++   +G ++ A + + V  HI KLR+K+      D
Sbjct: 640 FTTKEFDLLVFFVKHPNQVLSKEQLYERNWG-YESAADVSTVTVHIRKLREKIER----D 694

Query: 209 PVDSK 213
           P   K
Sbjct: 695 PAQPK 699


>gi|114706873|ref|ZP_01439773.1| two-component transcriptional regulator, winged helix family
           protein [Fulvimarina pelagi HTCC2506]
 gi|114537821|gb|EAU40945.1| two-component transcriptional regulator, winged helix family
           protein [Fulvimarina pelagi HTCC2506]
          Length = 225

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 15/214 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           +AL + G++A    DG +  G N  E  ++       D+  ++  L  K + +  +  + 
Sbjct: 18  KALKEAGHVADHAGDGET--GLNMAEGRDY-------DLLIVDRML-PKRDGLSVIADLR 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NR 125
           ++ +  P + +S    +   ++   +G DD + KP    E+LAR   + RR         
Sbjct: 68  KSGTHTPALILSALGQVDDRVEGLKAGGDDYLTKPYAMSELLARAEVLGRRRATGEVETS 127

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
            + G + +     +    G+   L  RE R+LEYLM + G+ V +T +   ++   FD  
Sbjct: 128 YQVGDLELDRLSHEVRRAGKPIILQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFDP- 186

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + NV++ HIS+LR K+  +     + + R  GY
Sbjct: 187 -QTNVIDVHISRLRSKIEREFDGPLLHTVRGSGY 219


>gi|148652012|ref|YP_001279105.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571096|gb|ABQ93155.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 238

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L + R +R H   P++ ++        +   + G DD V KP   R +LAR+ A+ 
Sbjct: 65  GSDGLTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALL 124

Query: 117 RRLKVSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR + + +     R E G + + + GR   + GE+      E  +L  L +N G+ +++ 
Sbjct: 125 RRSENAPSEEIPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
            IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 185 DIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 223


>gi|254227862|ref|ZP_04921292.1| transcriptional regulatory protein CpxR [Vibrio sp. Ex25]
 gi|262396149|ref|YP_003288002.1| probable transcriptional regulator SyrB [Vibrio sp. Ex25]
 gi|151939358|gb|EDN58186.1| transcriptional regulatory protein CpxR [Vibrio sp. Ex25]
 gi|262339743|gb|ACY53537.1| probable transcriptional regulator SyrB [Vibrio sp. Ex25]
          Length = 221

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R I      P++ ++      + LD + +G D  + KP +  E+L R+ AI RR+ 
Sbjct: 61  MQVARRICQRFATPILMLTALNDENSMLDGYQAGADQYIGKPFNVAELLMRIKAILRRVG 120

Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   R      ++  SD      Q    PL   E  +L YL+ N+G  ++K ++ + +  
Sbjct: 121 LERQRQTMCSTVQTISD------QLNSLPLTSTEAELLSYLVKNQGVVISKAELQTEVLK 174

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
                 + N ++ HIS +R+KL    L    + + R  GYS
Sbjct: 175 KELSPFDRN-LDMHISNIRRKLVEAGLSKQHIKTFRGKGYS 214


>gi|77458928|ref|YP_348434.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382931|gb|ABA74444.1| putative two-component response regulator Winged helix family
           [Pseudomonas fluorescens Pf0-1]
          Length = 241

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 16/173 (9%)

Query: 40  SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           + AR D   ++  L G+G   L L + +RA   +P+I ++    L   +   + G DD +
Sbjct: 47  AQARPDTIILDLMLPGEGG--LSLCQKVRAQMGIPIIMLTAMAELSDRIVGLELGADDYL 104

Query: 100 NKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFS---------DGRDPEVQGEVFP 148
            KP   +E+LARV A+ RR+     +    + P+  F+         + R PE  G + P
Sbjct: 105 TKPFAPQELLARVRALQRRVGENAPSGAEPSRPVMAFAGWHLDITCRELRSPE--GVMIP 162

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   E  +L  L+ +  + + + Q+    +G   +A + + ++  IS+LR+K+
Sbjct: 163 MSAGEFDLLLVLLEHPQRILTREQLIDLTHGQGHDAYDRS-IDVQISRLRRKI 214


>gi|300689749|ref|YP_003750744.1| transcriptional regulatory protein [Ralstonia solanacearum PSI07]
 gi|299076809|emb|CBJ49419.1| Transcriptional regulatory protein [Ralstonia solanacearum PSI07]
          Length = 221

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 87/187 (46%), Gaps = 26/187 (13%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           DV  ++  L G+ G  VL   R +RA    VP++ ++   ++   +   D G DD V KP
Sbjct: 46  DVLLLDLGLPGQDGHAVL---RTLRARGNPVPVLILTARDAVGERVRGLDGGADDYVLKP 102

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG---RDPEVQ------GEVFPLPRRE 153
               E+LAR+ A+ RR           P  V S+G    DP         GE   L  RE
Sbjct: 103 FEMVELLARMRAVLRR-----RGGAASP--VLSNGVLSLDPATHEVRAGDGEPVRLSGRE 155

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             +L+ LM   G  ++++++   IYG   E V  N VE  I  LRK    KLG D + + 
Sbjct: 156 FALLQALMLRPGAILSRSELEERIYGWGHE-VASNAVEFLIHALRK----KLGADSIKNV 210

Query: 214 RFLGYSI 220
           R +G+ +
Sbjct: 211 RGVGWMV 217


>gi|302381496|ref|YP_003817319.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192124|gb|ADK99695.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R++R      P+I ++   S   T+   DSG +D V KP     +LAR+ A  R  +
Sbjct: 66  EACRLLRKDGVSTPVIMLTAQDSDADTVLGLDSGANDYVTKPFRFAVLLARIRAHLRSHE 125

Query: 121 VSNNRA-ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S +   + GP      G+   + +G+   L  +E  IL+YL  +  K V++ ++ + ++
Sbjct: 126 QSEDAVFQIGPYEFRPAGKVLLDAKGKKVRLTEKETNILKYLYRSGTKAVSREELLTEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206
           G ++  V  + +E+HI +LR+K+  + G
Sbjct: 186 G-YNAGVTTHTLETHIYRLRQKIEPEPG 212


>gi|229158472|ref|ZP_04286533.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228624991|gb|EEK81757.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
          Length = 232

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV +N++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVVDNKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|167746479|ref|ZP_02418606.1| hypothetical protein ANACAC_01189 [Anaerostipes caccae DSM 14662]
 gi|167653439|gb|EDR97568.1| hypothetical protein ANACAC_01189 [Anaerostipes caccae DSM 14662]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 70/141 (49%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R IR  S V  + ++        +  +++G DD V KP     +++++ A++ R+ 
Sbjct: 63  LDFCREIRRISNVRFMFLTAMDQEIDIVMGYEAGADDYVVKPFSLAVLISKIHAVFARMD 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V   + E+G + V        V GE   L + E ++L   +++  +  +K Q+   ++ +
Sbjct: 123 VKEEKIESGKVCVHKTEMKVMVSGEERSLTKNEWKLLLLFISHPRQVFSKGQLLEQMFDM 182

Query: 181 FDEAVEENVVESHISKLRKKL 201
             E  +EN V  +I +LR+K+
Sbjct: 183 DGEFADENTVAVNIRRLREKI 203


>gi|148555862|ref|YP_001263444.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501052|gb|ABQ69306.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 226

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L RI +    +P+I +S        ++  D+G DD V KP+   E+ AR+ AI R  +  
Sbjct: 65  LQRIRQDGMGLPVIILSALGRPVEKVEGLDAGADDYVVKPVTAAELNARLNAILRGRRQP 124

Query: 123 NNRAET---GPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +T   G I V    F   RD    G+   L + E  +L  L+ N    V +  +  
Sbjct: 125 AQDGDTLRAGDIVVSPARFRAWRD----GKAVDLSKIEFNLLLELVRNVDSIVTRAMLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++G +D     N+V+ HI +LR KL    G DP+ + R +GY
Sbjct: 181 KVWG-YDFEPATNLVDVHIRRLRAKLTANGGGDPISTVRGVGY 222


>gi|118443383|ref|YP_877594.1| two-component response regulator [Clostridium novyi NT]
 gi|118133839|gb|ABK60883.1| two-component response regulator [Clostridium novyi NT]
          Length = 222

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SN 123
           IR +S+VP+I ++     +  L  ++ G DD V KP   + ++A+V A+ +R  +     
Sbjct: 66  IRQNSKVPIIMLTAKSEEEDKLLGYELGCDDYVTKPFSPKVLVAKVKALLKRSGIEEKET 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N      + +     + ++ GE+  L  +E  +L + + N    +++  I   ++G FD 
Sbjct: 126 NIKNYNGLYINKLSNEVKIHGEIVNLSPKEYDLLIFFVNNIDIVLSRDTILDKVWG-FDY 184

Query: 184 AVEENVVESHISKLRKKLRNKLGF 207
                 V++H+ +LR+KL+ K  +
Sbjct: 185 DGGLRTVDTHVKRLREKLKEKSNY 208


>gi|53803482|ref|YP_114746.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757243|gb|AAU91534.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 16/157 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ ++   +L   +   D+G DD + KP    E+LARV A+ RR      +A    +
Sbjct: 72  RTPVLMLTARDALTDRVRGLDTGADDYLTKPFAFEELLARVRALLRR----AEQARPAML 127

Query: 132 RVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY--GLFDEA 184
            V     DP  +     G    L  +E  ILE L+   G+ V++TQ+   I+  GL    
Sbjct: 128 SVADLVLDPRSRRVTRSGRPLSLTPKEYAILELLLRRAGEVVSRTQLAEEIWRTGLI--- 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +N+++ HIS LR+K+ +  G  P + + R  G+S+
Sbjct: 185 ALDNLIDVHISNLRRKV-DPPGVPPLIRTVRGCGFSL 220


>gi|89893318|ref|YP_516805.1| hypothetical protein DSY0572 [Desulfitobacterium hafniense Y51]
 gi|89332766|dbj|BAE82361.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 148

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 12/138 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFSDGRDPEVQ 143
            + G DD + KP     + A++ AI RR       +K+  +R   G +   +D      Q
Sbjct: 16  MNMGGDDFIAKPFDLNVLTAKIQAILRRTYHFAGQVKILEHR---GALLNTADA-SLTYQ 71

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           G+   L + + RIL+ LM N+G+ V++  +   ++   D  V+EN +  ++++LRKKL  
Sbjct: 72  GQHIELTKNDYRILQALMENKGRVVSRDTLMQRLWET-DSFVDENTLTVNMTRLRKKLEA 130

Query: 204 KLGFDPVDSKRFLGYSID 221
               D + +K+ LGY I+
Sbjct: 131 AGLKDFIITKKGLGYLIE 148


>gi|332976862|gb|EGK13686.1| DNA-binding response regulator [Psychrobacter sp. 1501(2011)]
          Length = 238

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L + R +R H   P++ ++        +   + G DD V KP   R +LAR+ A+ 
Sbjct: 65  GSDGLTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALL 124

Query: 117 RRLKVSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR + + +     R E G + + + GR   + GE+      E  +L  L +N G+ +++ 
Sbjct: 125 RRSENAPSEEVPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
            IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 185 DIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 223


>gi|325695127|gb|EGD37029.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N  + G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E +++E+LM N  K ++  +IF  ++    DE ++E  V  +IS LR+KL+
Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWANDEDEDLDEGFVWIYISYLRQKLK 204


>gi|320333505|ref|YP_004170216.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754794|gb|ADV66551.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 226

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 8/184 (4%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           +AR D+  ++  L G+    L++ R +RA  +  +I ++        +   + G DD V 
Sbjct: 44  AARPDLILLDLMLPGRSG--LDVLRSVRAEGRTGVILVTARAEETDQVVGLELGADDYVV 101

Query: 101 KPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
           KP   RE++ARV A+ RR    L+  +     G + V +      V G    L   E R+
Sbjct: 102 KPFRPREVMARVRAVLRRTQEALEPLSAPTRVGALEVDTRAVSVRVHGAPLSLTPAEFRL 161

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           L +L +  G+   + ++      L D    E VV++H++ +R+KL        + + R +
Sbjct: 162 LAHLASAPGRAFTREELLEG--ALPDSDAMERVVDAHLTSVRRKLEANGAPGLLHTVRGV 219

Query: 217 GYSI 220
           GY +
Sbjct: 220 GYRL 223


>gi|299541871|ref|ZP_07052194.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
 gi|298725609|gb|EFI66250.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 11/161 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S  P+I ++    +   L+ FD G DD + KP    E++ARV A+ RR   S + A
Sbjct: 67  IRERSTCPVIMLTALGEVNYRLEGFDHGADDYIGKPFIADEVVARVRAVLRRAVGSPDSA 126

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            +   G + +        + GE   L  R+  +L +L  +  +   + Q+   ++G   E
Sbjct: 127 TSKQYGSLVIDCKAHKVLLHGEEIVLTPRDLSVLMFLADHPNQTFTRDQLIDQVWGWEYE 186

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSK----RFLGYSI 220
              +  V+  I +LRK L+    +D  + +    R LGY +
Sbjct: 187 G-SDRAVDLAIKRLRKALKE---WDEAEGEIKTLRGLGYQL 223


>gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 244

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 88/169 (52%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + IR  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 76  MEVIKRIRKDSSIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRSE 135

Query: 120 -KVSNNRAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
            +++N++ +    GP+++  D  + + + G++  L   E  IL YL+A+   RV +   I
Sbjct: 136 GQMTNDQPDILNVGPLQINKDSHEVKTINGDLIQLTALEFGIL-YLLASHPNRVFSADDI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K+    G + V ++   +GY ++
Sbjct: 195 FERVWQQ-ESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 242


>gi|237807645|ref|YP_002892085.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237499906|gb|ACQ92499.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R HS +P++ ++        +   + G DD V+KP   RE++ARV AI RR     +
Sbjct: 65  RRLRNHSNIPVLMLTAKGDDIDRIIGLELGADDYVSKPCTPRELVARVRAILRR--ADPD 122

Query: 125 RAETG---PIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + E G   P+RV      +  R+   + E+  L   E  +LE L    G+ ++K  +   
Sbjct: 123 KQEPGQLQPLRVGALTISAASRNATWRDELLDLTSTEFNLLEILCRRAGRIISKEDLSLH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             G    A  +  ++ H+S LR+KL   K G  P+ + R +GY +
Sbjct: 183 TLG-RPLARYDRSIDVHVSNLRQKLGVLKDGRSPIQTVRGIGYQL 226


>gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 239

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 16/223 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIG-KGEKV 60
           ++++D A + D      GD+G  +    S +     L+     D   ++  L G  G +V
Sbjct: 7   LIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDGLQV 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R +  +  VP+I IS   S    +   + G DD + KP    E++ARV A+ RR +
Sbjct: 67  CQRARAMARY--VPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                A       E G +++    R   V G    L  RE  +L +   +  +  A+ ++
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            + ++G +     E+ V +HI++LR K+      DP + +R L
Sbjct: 185 LNQVWG-YQHDGYEHTVNTHINRLRSKIEP----DPANPRRLL 222


>gi|153853359|ref|ZP_01994768.1| hypothetical protein DORLON_00757 [Dorea longicatena DSM 13814]
 gi|149754145|gb|EDM64076.1| hypothetical protein DORLON_00757 [Dorea longicatena DSM 13814]
          Length = 194

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I +S        +   + G D+ + KP     + A+V A+ RR       A
Sbjct: 37  IRKISKVPIIFLSSANDNMNIVMAMNMGGDEFIEKPFDLNVVTAKVQAVLRRTYEFRGTA 96

Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +     G I   +D      Q +   L + E +IL+ L+ N GK V++  I + ++   +
Sbjct: 97  DVMEWNGAILNLADAT-VLYQDQKLELSKNEFKILQILLENTGKIVSRESIMTRLWD-SN 154

Query: 183 EAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           E +++N +  ++++LRKK+  ++G    + +K+ +GY ++
Sbjct: 155 EFIDDNTLTVNVARLRKKME-QIGLGGKIITKKGIGYMVE 193


>gi|125718593|ref|YP_001035726.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|125498510|gb|ABN45176.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N  + G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E +++E+LM N  K ++  +IF  ++    DE ++E  V  +IS LR+KL+
Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204


>gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719]
 gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115]
 gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300]
 gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224]
 gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948]
 gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937]
 gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30]
 gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3]
 gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796]
 gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719]
 gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115]
 gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300]
 gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224]
 gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948]
 gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937]
 gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3]
 gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30]
 gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981]
 gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796]
 gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 34/220 (15%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D Y A  G+D V L       +EE        D+  ++  L G+    +E+ R +R   +
Sbjct: 30  DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKYE 75

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--- 129
           +P+I ++   S    +   + G DD V KP   RE++ARV A  RR   S    +TG   
Sbjct: 76  MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR-HYSQPAQDTGNVT 134

Query: 130 ------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  I ++ D    + +GE   L  RE  +  YL  + G+ + +  +   ++G +D 
Sbjct: 135 NEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDY 193

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
             +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 194 FGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 229


>gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 8/152 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L L + IR  S +P+I ++        +   + G DD + KP   RE++AR+ AI 
Sbjct: 57  GPDGLSLCKEIRKISNIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAIL 116

Query: 117 RRLK----VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR+     +  +R        + +  D R  EV+G    L  +E  +L ++    G+  +
Sbjct: 117 RRVAAQPIIQEDRTAILSFSELTINPDNRTVEVRGSEIALTPKEFDLLYFMAKTPGRAFS 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  +   ++G +D   +   V++HI++LR KL
Sbjct: 177 RENLLENVWG-YDFYGDLRTVDTHINRLRDKL 207


>gi|332991876|gb|AEF01931.1| Response regulator consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Alteromonas sp. SN2]
          Length = 227

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 80/161 (49%), Gaps = 5/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ + +   P++ +S    ++  +    SG +D + KP    E+LARV  +  R + S
Sbjct: 63  LERLRKDNVLTPVLLLSAKSQVEDKVRGLRSGANDYLTKPFAFEELLARVEGLAGRERES 122

Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++   + G + +    R  +       L  +E ++LE L+ ++GK V ++ +   ++  
Sbjct: 123 GDKTLIKVGDLTLDLVNRKVQRGDTEIDLQSKEFQLLECLLRHQGKVVTRSMLLEQVWNY 182

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   + NV++ HIS+LR+K+        +++ R  GY I
Sbjct: 183 HFDP--QTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRI 221


>gi|329927440|ref|ZP_08281684.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
 gi|328938453|gb|EGG34839.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 24/184 (13%)

Query: 46  VSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105
           +  ++ F +G+        R+ +A+  +P++ +S   S+   L   +   DD + KP H 
Sbjct: 54  LPGLDGFTVGQ--------RLKKAYPGLPILMLSARTSIDDKLQGLEFA-DDYLTKPFHP 104

Query: 106 REILARVAAIYRRLKVSNNRAETGPIRV--FSDGRDP-----EVQGEVFPLPRRERRILE 158
            E+ AR+  + RR  V +      PIRV   S   D      E  GE   L  ++ +I  
Sbjct: 105 DELAARLEVLLRRSVVKSAE----PIRVKHLSVYEDENRIVNEDTGEETLLTGKQHQIFM 160

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHISKLRKKL-RNKLGFDPVDSKRFL 216
           YL+ ++G+ + K QI+ +++G  +  +E +  +  HI  LR+KL R+    + +++ R L
Sbjct: 161 YLLQHQGRVMTKEQIYESVWG--ESYIEGDKTLMVHIRYLREKLERDPANPEIIETVRGL 218

Query: 217 GYSI 220
           GY +
Sbjct: 219 GYRV 222


>gi|307725647|ref|YP_003908860.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307586172|gb|ADN59569.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 347

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--- 121
           R   A  + PLI I      +     FD+G DDVV  P+  RE++ RV     R ++   
Sbjct: 66  RACYADRRAPLIVIGAGHDREAIGRLFDAGADDVVLSPVDAREVMLRVHLALLRAQLQSA 125

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++  E G  R+        V      L  RE  I   L + RG+ V++ QI  A++  
Sbjct: 126 DSSDMLECGVYRLDRRTCTVHVDSHAVRLTPREFAIAWLLFSRRGEYVSRRQIAGAVWSR 185

Query: 181 FDEAVEENVVESHISKLRKKL 201
            ++ +    +E HI KLRKKL
Sbjct: 186 SEDIIGRT-LEQHIYKLRKKL 205


>gi|317049050|ref|YP_004116698.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316950667|gb|ADU70142.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 226

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 24/216 (11%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D  + L G  GV  EG  S  +   +      D+S I+              R +R +S+
Sbjct: 26  DAQLVLTGSAGV--EGALSGNYTAMILDIMLPDMSGIDVL------------RQVRQNSR 71

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAET- 128
           +P+I ++        +   + G DD V KP + RE++AR+ A+ RR +      ++ E  
Sbjct: 72  LPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRFEDQAPLPDKKEVL 131

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +    R  E QG+ F L   E  +L+ LM    + V+K ++     G   EA +
Sbjct: 132 RWGDLSLNPATRITEWQGKAFDLTASEFNLLDLLMRAPDRVVSKDELSEKGLGRPREAYD 191

Query: 187 ENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220
            + V+ HIS +R+KL   L  D V+  + R +GY I
Sbjct: 192 RS-VDVHISNIRQKL-AALTADSVNIETVRSIGYRI 225


>gi|242309430|ref|ZP_04808585.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489]
 gi|239524001|gb|EEQ63867.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489]
          Length = 222

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 2/141 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL + +R  S +P+I  S    + + +  F+ G DD + K     E++AR+ A+ +R  
Sbjct: 62  LELCKKMREISDLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALLKRYS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N     G + V S+ R   + G    L   E  IL  L++N+GK  ++  +  AI  +
Sbjct: 122 -ANQVLRCGELEVDSNKRKVTLDGYSIDLTPAEFEILNLLISNKGKPYSRESLSQAISSI 180

Query: 181 FDEAVEENVVESHISKLRKKL 201
             ++   + +++HI  LR KL
Sbjct: 181 APDSSLRS-IDTHIRNLRAKL 200


>gi|191637032|ref|YP_001986198.1| Response regulator [Lactobacillus casei BL23]
 gi|301065366|ref|YP_003787389.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|190711334|emb|CAQ65340.1| Response regulator [Lactobacillus casei BL23]
 gi|300437773|gb|ADK17539.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381059|gb|AEA52535.1| Two-component response regulator [Lactobacillus casei LC2W]
 gi|327384234|gb|AEA55708.1| Two-component response regulator [Lactobacillus casei BD-II]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR +  V+N 
Sbjct: 67  VRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQNEVTNT 126

Query: 125 RA---ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179
                E GP+ +  D  +   + G+   L   E  IL YL+A+   RV +  +IF  ++ 
Sbjct: 127 EPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 186 Q-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC
           19977]
 gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus]
          Length = 249

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  S   ++ ++   +   T+     G DD V KP   RE++ARV A+ RR +
Sbjct: 75  IEVCRQLRVFSDAYVVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRRPR 134

Query: 121 VSNN-----RAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +         E  P RVF       DGR+  V      L R E  +L  L +  G  ++
Sbjct: 135 RAPESPAAVTPELSPPRVFGALRINVDGREVHVGERPVTLTRTEFDVLAALSSRPGIVLS 194

Query: 170 KTQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201
           + Q+   ++G  D  V  +N+V+ H+  LR+KL
Sbjct: 195 RKQLLDTVWG--DTWVGNDNIVDVHVGHLRQKL 225


>gi|160882234|ref|ZP_02063237.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483]
 gi|156112386|gb|EDO14131.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR  +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELAKEIRKTNPHIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR-- 119

Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V+ N  E     V++D R      D E       L  +E  +L Y++ N  + +++ +I 
Sbjct: 120 VAGNAQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIA 179

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++   FD     N ++ +I+ LRKK+        + +K  +G+
Sbjct: 180 EKVWNTHFDTGT--NFIDVYINYLRKKIDRDFEPKLIHTKAGMGF 222


>gi|145221065|ref|YP_001131743.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315441964|ref|YP_004074843.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145213551|gb|ABP42955.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315260267|gb|ADT97008.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 248

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           + +P+  +S   ++   +   ++G DD + KP    E++AR+ A+ RR   S+  ++T  
Sbjct: 93  NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHSDPTSDTMT 152

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++G +D  V+ 
Sbjct: 153 VGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVWG-YDFDVDT 211

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           NV +  +S LR+KL        + + R +GY +
Sbjct: 212 NVADVFVSYLRRKLERDGLPRVIHTVRGIGYVL 244


>gi|330720729|gb|EGG98956.1| Functional role page for TorCAD operon transcriptional regulatory
           protein TorR [gamma proteobacterium IMCC2047]
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 21/216 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58
            +++DD  + ++ ++  F        GF   + E+    S     + I+  L+     GE
Sbjct: 8   LLVVDDEPVTRNNFVDYF-----EAAGFFVTDLEDGKSVSETLAGNEIDLVLLDINLPGE 62

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             L + R +R  S + +I ++        +   + G DD V KP++ RE+LARV +   R
Sbjct: 63  DGLSIARELRRTSDIGIILVTGRTEDIDRVVGLEIGADDYVTKPVNPRELLARVKSTLWR 122

Query: 119 L------KVSNNRAETGPIRVFSDGR-DPEVQ------GEVFPLPRRERRILEYLMANRG 165
           +       ++ + +  G I+VFS    D E Q      G    L   E +IL Y  +N G
Sbjct: 123 IDKEDHANLNASPSSKGKIKVFSKWHLDLEKQQLRNKEGRPTSLTDAEFKILSYFTSNPG 182

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             + + ++ + I    DE      V+  + +LRKKL
Sbjct: 183 TVLNRDKLINQINNAKDENFSSRTVDVLVGRLRKKL 218


>gi|323483719|ref|ZP_08089099.1| regulatory protein VanR [Clostridium symbiosum WAL-14163]
 gi|323402910|gb|EGA95228.1| regulatory protein VanR [Clostridium symbiosum WAL-14163]
          Length = 236

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 24/213 (11%)

Query: 27  EGFNSLEF----EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           EGF  +E     E   +S    D+  ++  + GK   +  L   IR    VP++ ++   
Sbjct: 30  EGFEVIEASNGKEAVEKSGGSVDLIILDVMMPGKSGILACLE--IRKKLTVPILFLTART 87

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAETG------PIRV 133
                   F +G DD + KP  + E++ARV A+ RR  V     NR E         + +
Sbjct: 88  QDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYYVYQGGGNRKEDDVQIQIRDLLL 147

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D R+  ++G    L   E RIL  L  NRGK      I+ +++      +  N V  H
Sbjct: 148 NKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQNIYESVWEEPYYYISNNTVMVH 207

Query: 194 ISKLRKKLRNKLGFDPVDSKRFL-----GYSID 221
           I  LRKKL      DP + K  +     GY I+
Sbjct: 208 IRNLRKKLEK----DPKNPKYIVNVWGKGYRIE 236


>gi|319654049|ref|ZP_08008141.1| hypothetical protein HMPREF1013_04760 [Bacillus sp. 2_A_57_CT2]
 gi|317394242|gb|EFV74988.1| hypothetical protein HMPREF1013_04760 [Bacillus sp. 2_A_57_CT2]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNN 124
           IR  S VP+I +S+    +  +D F  G DD + KP +  E+L R+ A+ RR  L +S++
Sbjct: 66  IRRVSNVPIIILSNKSEKEDIVDGFKQGADDYLIKPFNKNELLVRIEALLRRSSLVISDS 125

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               G I       +    G+   +  +E  ++ +L++N     ++  +   I+   +  
Sbjct: 126 LFFQGLIWD-ETSFNLSFNGKSISMTPKEFALVGHLLSNINNVFSREALLQTIWSQ-EWK 183

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
            E   ++SHI  +R+KLR   GF PVD   K   G    W
Sbjct: 184 TESRTIDSHIRNIREKLRQS-GF-PVDRHLKTIWGVGYKW 221


>gi|311694076|gb|ADP96949.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 244

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 13/142 (9%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           +P++ ++   S    +   D+G DD + KP    E+ AR+ A+ RR   SN  +E     
Sbjct: 74  IPVVFLTQRDSEADIVRALDAGADDYLAKPARAAELGARINALARR---SNPDSEKEVLR 130

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GP  + +  R   + GE   L  ++  +  +L  N+G+ + +  +   ++GL  + +  
Sbjct: 131 YGPFEINTQQRVIALHGEELTLTDKDFDLTLFLFQNQGRLLTREMLLERVWGLARD-INT 189

Query: 188 NVVESHISKLRKKLRNKLGFDP 209
             V++H+S+LR+    +LG +P
Sbjct: 190 RTVDTHMSRLRR----RLGLNP 207


>gi|304408471|ref|ZP_07390115.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342556|gb|EFM08406.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 77/153 (50%), Gaps = 2/153 (1%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAET 128
           ++ +PL+ ++        +  FD G DD V KP    E++ARV A+ +R +++ ++  + 
Sbjct: 71  YADMPLLMLTAKGETSQKIKGFDLGTDDYVVKPFIPEELVARVKALLKRYRIAVSSSVQI 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +     +  +      LP +E  +L  L +  G+ + + Q+  AI+G+ D    E 
Sbjct: 131 GAVTLNRRTFETLMGDASLSLPPKEFELLFKLASYPGQTLLREQLIEAIWGI-DFEGNER 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ HI++LR++         + + R LGY ++
Sbjct: 190 TLDVHINRLRERFPEAEAGFRIATVRGLGYRME 222


>gi|295106136|emb|CBL03679.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 238

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 17/158 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L R +R  S  P+I +S        +   D+G DD + KP    E+LAR+    RRL 
Sbjct: 70  IDLIRQVRTWSHTPIIVVSARTEDADKVAALDAGADDYLIKPFSVEELLARLRVATRRLA 129

Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +     GP+      R+    R   + GE   L   E ++L  L  N GK +    I 
Sbjct: 130 ADSGTDRDGPVYENGDLRIDYAARTVTLAGEEVHLTPIEYKLLALLARNTGKVLTHNAIL 189

Query: 175 SAIYGLFDEAVEENVVESHISKLR---KKLRNKLGFDP 209
             ++G        N + S +  LR     LR K+  DP
Sbjct: 190 KEVWG--------NALASDLPSLRVFMATLRKKIERDP 219


>gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
 gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
          Length = 233

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 7/162 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKV 121
           L RI +  +  P+I ++   ++   +   D G +D V KP    E+LAR+ A  R +L  
Sbjct: 66  LRRIRKEGNTTPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLRTQLST 125

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ-GE-VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S    + G +    ++ + R  E++ GE    L  RE  +L YL+ +  + + + QI   
Sbjct: 126 SGTHLDEGELTLADLYVNERTREIKRGETTIELTPREFDLLVYLLRHPEQVMTREQILEH 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G FD   + NVV+ +I  +R+KL        + + R +GY
Sbjct: 186 VWG-FDYFGDTNVVDVYIRYMRQKLDKPFDAPLIHTVRGVGY 226


>gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 39/233 (16%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           +RAL  +GY      DGV           E L +  RE    I   ++  G   +++ R+
Sbjct: 19  ERALTLEGYRVTSVSDGV-----------EALAAIHREHPDVIVLDVMMPGVDGIQVCRV 67

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------- 118
           +RA   + P++ ++        ++  D+G DD V KP    E+ AR+ A+ RR       
Sbjct: 68  LRAEGDRTPILMLTARVETADRIEGLDAGADDYVAKPFDVEEVFARLRALLRRVAPVPEP 127

Query: 119 ----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                     L V++ R +    RV+  G + E       L R E  +LE L  N G  +
Sbjct: 128 TTEGTVFDATLAVADLRLDPSARRVWRGGTELE-------LTRTEFDLLELLARNAGIVL 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               I+S I+G +D       +  +I  LR+K+ ++ G  P + + R +GY++
Sbjct: 181 DHGTIYSRIWG-YDFGPGSKNLAVYIGYLRRKV-DQTGLTPLIHTVRGVGYTL 231


>gi|209518321|ref|ZP_03267146.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501240|gb|EEA01271.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 257

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR   V  +V  L  RE  +LE L+   G+ V+K Q
Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+    G   + + R LGY ++
Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 219


>gi|163749892|ref|ZP_02157137.1| DNA-binding response regulator [Shewanella benthica KT99]
 gi|161330406|gb|EDQ01385.1| DNA-binding response regulator [Shewanella benthica KT99]
          Length = 225

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 22/172 (12%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L+L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R 
Sbjct: 60  LKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRG 119

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   L V N   E    +V  DG +  +Q + F       ++L+YLM +  + V++
Sbjct: 120 LSQPAETELSVGNLVMELLTRKVTLDGSELMLQPKEF-------QLLKYLMEHPNQVVSR 172

Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           T +F A++   FD     NV++ HI+KLR+K   +LGF + +++ R  GY +
Sbjct: 173 TLLFEAVWDYHFDP--RTNVIDVHIAKLRRKF-EELGFGELIETVRGAGYRL 221


>gi|17546253|ref|NP_519655.1| phosphate regulon two-component response regulator transcription
           regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428550|emb|CAD15236.1| probable phosphate regulon two-component response regulator
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 237

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 17/164 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
           Q+P+I ++     Q  +   D+G DD V KP   +E+LAR+ A+ RR         + ++
Sbjct: 76  QIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135

Query: 123 NNRAETGPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             R +    RV +   + E  ++ ++ P    E R+L +LM +  +  +++Q+   ++G 
Sbjct: 136 GLRLDPATHRVTAVNSESENPIKLDLGP---TEFRLLHFLMTHPERVHSRSQLLDQVWG- 191

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D   VEE  V+ HI +LR  L        +++ R  GY +  N
Sbjct: 192 -DHVFVEERTVDVHIKRLRAALAPGGYSSMIETVRGSGYRLARN 234


>gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132]
 gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819]
 gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1]
 gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR
 gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR
 gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR
 gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR
 gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR
 gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR
 gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR
 gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR
 gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR
 gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR
 gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR
 gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR
 gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR
 gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR
 gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR
 gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus]
 gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819]
 gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00]
 gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 233

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 34/220 (15%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D Y A  G+D V L       +EE        D+  ++  L G+    +E+ R +R   +
Sbjct: 28  DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKYE 73

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--- 129
           +P+I ++   S    +   + G DD V KP   RE++ARV A  RR   S    +TG   
Sbjct: 74  MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR-HYSQPAQDTGNVT 132

Query: 130 ------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  I ++ D    + +GE   L  RE  +  YL  + G+ + +  +   ++G +D 
Sbjct: 133 NEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDY 191

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
             +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 192 FGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227


>gi|332655319|ref|ZP_08421059.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332515824|gb|EGJ45434.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 18/167 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           +R  S VP+I ++        +   + G DD + KP +  E++ARV +  RR        
Sbjct: 81  LREGSNVPIILLTAKSEDNDKILGLNIGADDYITKPFNPLEVIARVKSQLRRYTALGGAE 140

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      GPI +    +   V GE   L   E  IL+ LM + G+  +  QI+  ++  
Sbjct: 141 KAPGLLSVGPISMDDGAKLVTVDGEPVSLTPIEYNILKLLMTHPGQVFSSAQIYEQVWN- 199

Query: 181 FDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
            D A   EN V  HI  LR+K+      +P + +       LGY +D
Sbjct: 200 -DPAYGSENTVAVHIRHLREKIE----INPAEPRYLKVVWGLGYKMD 241


>gi|328480232|gb|EGF49152.1| two-component response regulator [Lactobacillus rhamnosus MTCC
           5462]
          Length = 188

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR +  V+N+
Sbjct: 27  VRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQNEVTNS 86

Query: 125 RA---ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179
                E GP+ +  D  +   + G+   L   E  IL YL+A+   RV +  +IF  ++ 
Sbjct: 87  EPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 145

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 146 Q-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 187


>gi|327490080|gb|EGF21868.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|332367393|gb|EGJ45126.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N  + G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E +++E+LM N  K ++  +IF  ++    DE ++E  V  +IS LR+KL+
Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWANDEDEDLDEGFVWIYISYLRQKLK 204


>gi|325690941|gb|EGD32941.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N  + G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E +++E+LM N  K ++  +IF  ++    DE ++E  V  +IS LR+KL+
Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWANDEDEDLDEGFVWIYISYLRQKLK 204


>gi|313681654|ref|YP_004059392.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154514|gb|ADR33192.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 16/156 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P I I+   ++    + +D+G DD + KP   +E+  R+ A+ +R   S+   E  PI
Sbjct: 81  KAPAIFITSLNTIDDLSNAYDAGCDDYLKKPFELKELELRIRALIKR---SSILGEDTPI 137

Query: 132 RVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            +          GR    + E+  LPR+E +IL+ L+ + G  V+   +  + +  FDE 
Sbjct: 138 AISETIVFDPKLGRLTNDEDEI-TLPRKEAKILKILLCHPGSIVSSKVLIESAWD-FDED 195

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E  + +HI    K LR  LG + + + R  GY I
Sbjct: 196 GSEESLRTHI----KNLRKHLGKERIINIRGQGYQI 227


>gi|302185041|ref|ZP_07261714.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 222

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++     +  + +   A E    I   L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLA--DGRDAVHQGASEPYDLIVLDLGLPGMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R+     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPTLESAGLNLDESRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+    KLG   V+++R  GY
Sbjct: 181 DGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215


>gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074627|gb|ADJ64026.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 239

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 5/154 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           R H   P++ ++    ++  +   D G DD + KP   RE+ AR+  + RR    S N  
Sbjct: 68  RGH-HTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSGGESTNLL 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               + +    R   + G+   L RRE  +LE + A  G+   K ++   ++ + D+   
Sbjct: 127 HCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFTV-DDNPS 185

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N VE ++++LRKKL     F+ + + R LGY +
Sbjct: 186 ANSVEQYVARLRKKL-AAAAFE-IRTLRGLGYQL 217


>gi|300693555|ref|YP_003749528.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum PSI07]
 gi|299075592|emb|CBJ34885.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum PSI07]
          Length = 231

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 14/167 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IRA S+VP++ ++        +   + G DD V KP    E++AR+ AI RR+     
Sbjct: 65  RRIRAASRVPVLMLTARGDDIDRISGLNLGADDYVPKPCTPGELVARLRAILRRVPAAGT 124

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V+N     GP+ ++   R    Q     L   E  ++E L  + G+ V+K  I   
Sbjct: 125 GDASVANGPIHAGPLALWPSSRRATWQDAPLDLTGTEFSLIEILARHAGRLVSKEDISQQ 184

Query: 177 IYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               FD  +   +  ++ HIS +R+KL  +    P + S R +GY +
Sbjct: 185 A---FDRPLARFDRRIDVHISSIRQKLGQRPDGQPWIISVRGMGYQL 228


>gi|218903108|ref|YP_002450942.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539130|gb|ACK91528.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 254

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 97  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 156

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 157 IQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 215

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 216 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 251


>gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 232

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ +++  E G + +  + R  +V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL-----RNKL 205
           IF  ++   D+  E  N V  HI  LRKKL     +NKL
Sbjct: 183 IFQQVWA--DDYFEGGNTVMVHIRTLRKKLGEDKRKNKL 219


>gi|30022514|ref|NP_834145.1| two-component response regulator yvcP [Bacillus cereus ATCC 14579]
 gi|229048152|ref|ZP_04193721.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229111911|ref|ZP_04241455.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229129718|ref|ZP_04258686.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229147010|ref|ZP_04275370.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296504931|ref|YP_003666631.1| two-component response regulator yvcP [Bacillus thuringiensis
           BMB171]
 gi|29898072|gb|AAP11346.1| Two-component response regulator yvcP [Bacillus cereus ATCC 14579]
 gi|228636398|gb|EEK92868.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228653835|gb|EEL09705.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228671475|gb|EEL26775.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228723139|gb|EEL74515.1| Two-component response regulator [Bacillus cereus AH676]
 gi|296325983|gb|ADH08911.1| two-component response regulator yvcP [Bacillus thuringiensis
           BMB171]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|86140162|ref|ZP_01058724.1| DNA-binding response regulator [Roseobacter sp. MED193]
 gi|85823099|gb|EAQ43312.1| DNA-binding response regulator [Roseobacter sp. MED193]
          Length = 221

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 23/232 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
           F+LI+D   +     +    DG  ++    L+       +   D+  ++  L  G G   
Sbjct: 3   FLLIEDNFDLAQAICSRMKQDGHVVDHAARLQDAFAYSETGEYDLILLDIMLPDGDGRSF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R        P+I ++    +   +   D G DD V KP  H E+ AR  A+ RR  
Sbjct: 63  LKRHRA--GKKDTPVIVLTARSQVSDRISMLDLGADDYVTKPFDHEELQARCRAVLRR-- 118

Query: 121 VSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +  A+T  +R+ +   DP      V G    L  RE R+LE L+ + G+   K ++F 
Sbjct: 119 -KSGTAQT-TVRLGNIAFDPVAGSLIVDGVAITLRNRELRLLELLINSPGQVFPKHKLFD 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSIDWN 223
            ++  +DE V EN +E +I +LRK L      DP    + + R LGY +D++
Sbjct: 177 RLFS-YDEDVSENAIEVYIGRLRKHL------DPSSLRITTLRGLGYRLDYD 221


>gi|146295477|ref|YP_001179248.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409053|gb|ABP66057.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 221

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 9/136 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           +P I ++        L  F+ G +D + KP    E++ARV  + RR   S N  E+    
Sbjct: 70  IPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRR---SKNFEESIKLL 126

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +F       V GE   L  +E  +L +L  N+    ++ +I   ++G FD   E 
Sbjct: 127 DGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG-FDFIGET 185

Query: 188 NVVESHISKLRKKLRN 203
             V+ HI +LR+KL++
Sbjct: 186 RTVDVHIKQLREKLKD 201


>gi|300691227|ref|YP_003752222.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum PSI07]
 gi|299078287|emb|CBJ50935.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum PSI07]
          Length = 237

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 17/164 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
           Q+P+I ++     Q  +   D+G DD V KP   +E+LAR+ A+ RR         + ++
Sbjct: 76  QIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135

Query: 123 NNRAETGPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             R +    RV +   + E  ++ ++ P    E R+L +LM +  +  +++Q+   ++G 
Sbjct: 136 GLRLDPATHRVTAMNGESENPIKLDLGP---TEFRLLHFLMTHPERVHSRSQLLDQVWG- 191

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D   VEE  V+ HI +LR  L      + +++ R  GY +  N
Sbjct: 192 -DHVFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234


>gi|258517267|ref|YP_003193489.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780972|gb|ACV64866.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 226

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----S 122
           IR  S +P+I ++        L  F+ GVDD + KP   +E++AR+ A+ +R  +     
Sbjct: 69  IRERSNIPIIILTARDEEYAKLLGFELGVDDYITKPFSPKEVVARIKAVLKRANIIPLSE 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  +T  IR+    R+  +  +   L  +E  +L + +  + +   + ++ + ++G +D
Sbjct: 129 ESFLKTDKIRINPSTREVYLDDKELKLTPKEYTLLYHFVKYKDQVFTREELLTEVWG-YD 187

Query: 183 EAVEENVVESHISKLRKKL 201
              +   V++HI ++R+KL
Sbjct: 188 FYGDLRTVDTHIKQIREKL 206


>gi|228987786|ref|ZP_04147896.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771944|gb|EEM20400.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G+   L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATETTEKMIQIGDLMIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + I+   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLIWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|218234534|ref|YP_002369247.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218162491|gb|ACK62483.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|167461939|ref|ZP_02327028.1| hypothetical protein Plarl_05185 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 205

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ + +  VP+I ++   ++   +   D G +D V KP    E+LAR+  + R  +  
Sbjct: 36  LRRLRQNNPTVPVILLTARDAVPDRVSGLDQGANDYVTKPFAIEELLARIRNLLRITEQQ 95

Query: 123 NNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           N       + V         R+    G+   L  +E  +L+YLM ++G+   +  I S +
Sbjct: 96  NQPENEQTLHVDDLDMNLKSREVRRNGQWVELTPKEFDLLQYLMEHKGEVRTREDIISDV 155

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G +D   + N+V+ +I  LR+K+        + + R +GY
Sbjct: 156 WG-YDFVGDTNIVDVYIRYLRQKIEKGFKGKLIHTIRGIGY 195


>gi|170723552|ref|YP_001751240.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169761555|gb|ACA74871.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR      
Sbjct: 64  RALRARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSGSHEP 123

Query: 125 -RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
            + + G + +    R     G+   L  +E  +L  L   +G+ ++KT I   ++ + FD
Sbjct: 124 LQVQVGDLWIDLMARKASRGGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWDINFD 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + NVVE  I +LR KL        + + R +GY ++
Sbjct: 184 S--DANVVEVAIKRLRAKLDGPFDNKLLHTIRGMGYVLE 220


>gi|75763158|ref|ZP_00742928.1| Two-component response regulator yvcP [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899608|ref|YP_002448019.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228902969|ref|ZP_04067109.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228967519|ref|ZP_04128546.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229152642|ref|ZP_04280830.1| Two-component response regulator [Bacillus cereus m1550]
 gi|74489353|gb|EAO52799.1| Two-component response regulator yvcP [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218543835|gb|ACK96229.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228630788|gb|EEK87429.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228792174|gb|EEM39749.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228856645|gb|EEN01165.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 252

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 82  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 141

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 142 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 199

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 200 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 242


>gi|323527265|ref|YP_004229418.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384267|gb|ADX56358.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 267

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR   +  +V  L  RE  +LE L+   G+ V+K Q
Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+    G   + + R LGY ++
Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 219


>gi|262040109|ref|ZP_06013362.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042462|gb|EEW43480.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 240

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 6/153 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K   +        P+ +  +GR     + ++  L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRDLQAMDAQSPL-IVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|238763220|ref|ZP_04624185.1| Transcriptional regulatory protein creB [Yersinia kristensenii ATCC
           33638]
 gi|238698493|gb|EEP91245.1| Transcriptional regulatory protein creB [Yersinia kristensenii ATCC
           33638]
          Length = 232

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 8/134 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA------ETGPIRVFSDGRDPEVQGEVF 147
           G DD + KP   RE+ ARV  + RRL+ S  RA      + GP  +   G       +V 
Sbjct: 96  GADDYIAKPFSPREVSARVRTVLRRLQKSQTRAVSATLHQFGPFTLDEAGARVTYHQQVL 155

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLG 206
            L R E  +L+ L+    +  ++ Q+   ++   +E+ ++  V++HI  LR KLR  +  
Sbjct: 156 WLTRYEYLLLKTLLLAPERVFSRQQLMDIVWAQAEES-QDRTVDTHIKTLRSKLRMIRDE 214

Query: 207 FDPVDSKRFLGYSI 220
             P+ + R LGYS+
Sbjct: 215 ESPIRTHRGLGYSL 228


>gi|228960716|ref|ZP_04122355.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798932|gb|EEM45907.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|229101412|ref|ZP_04232155.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681988|gb|EEL36122.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 10/160 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   +N   
Sbjct: 67  IRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR---TNEHK 123

Query: 127 ETGPIRVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           +     +  D       V  E   L   E  +L   + +    +++ Q+   I+GL +  
Sbjct: 124 QIQYHGILWDEAKHFASVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL-NTN 182

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
            E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 183 TEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220


>gi|222152394|ref|YP_002561569.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113205|emb|CAR40676.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 227

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 80/150 (53%), Gaps = 5/150 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GP 130
           + P++ I+    L++    F  GVDD + KPI   E+  RV A+ RR ++ ++R  +   
Sbjct: 73  KTPVLMITAKSQLESLETAFKLGVDDYLVKPIRLPELSLRVQALLRRSQLESDRQLSFKG 132

Query: 131 IRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
            R+  D +        E   LP++E  +L  LM++  K   +  +   I+G+ +E  +E 
Sbjct: 133 SRLEFDAQTLTYLDSNERLQLPQKEFLLLYKLMSHPEKIFTRLDLLDDIWGM-EEDRDER 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +V++ + +LR+K++N   FD + + R LGY
Sbjct: 192 LVDACVKRLRQKIQNNPDFD-ILTVRGLGY 220


>gi|196042971|ref|ZP_03110210.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|229185367|ref|ZP_04312550.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|196026455|gb|EDX65123.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|228598100|gb|EEK55737.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 9/142 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR   Q+P+I +S        +    SG +D + KP +  E++AR+ +  RR +V     
Sbjct: 70  IREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRVYQTEE 129

Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179
                 E G ++V  + R   ++ E   L  +E  IL  L+ N+GK  +  +I+  ++  
Sbjct: 130 VKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYEMVWED 189

Query: 180 LFDEAVEENVVESHISKLRKKL 201
           LF ++  +N V  HI+K+R+K+
Sbjct: 190 LFYKS--DNTVMVHITKIREKI 209


>gi|94312408|ref|YP_585618.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356260|gb|ABF10349.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Cupriavidus metallidurans CH34]
          Length = 261

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 35/230 (15%)

Query: 2   FVLIDD----RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD    RA++ + Y+A FG +    EG  ++       + ++++   +   L   G
Sbjct: 29  LLIVDDDPQIRAMLAE-YLATFGMEAEGAEGGTAMR-----AAMSKQEYDLVILDLSLPG 82

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E  L L R IR  S +P+I ++    L   +   + G DD V KP   RE++AR+  + R
Sbjct: 83  ENGLTLCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLR 142

Query: 118 RLKVSNNR-AETGP--------------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
           R +    R A   P              +R   D  D      V PL   E R+L   + 
Sbjct: 143 RSRADVRRPAPAAPGHEVRFAAWRLNTTLRQLVDAED-----TVVPLSNAEFRLLLTFIE 197

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           +  + + +  + +   G  D  V +  ++  +S+LR+KLR+    DP DS
Sbjct: 198 HPNRVLDREMLINTARG-RDLDVFDRSIDLLVSRLRQKLRD----DPRDS 242


>gi|120556590|ref|YP_960941.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120326439|gb|ABM20754.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 233

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VLI+D A ++D Y A F   G  +  +        +   +  D++ I+  L  + E   
Sbjct: 5   IVLIEDEAGIRDNYRAAFERRGYRVSTYGDRPAAWQVLRQSLPDLAIIDVGLGEEAEGGF 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + +R+ S  +P+I ++   S   ++     G DD V K +    +LAR+ A+ RR  
Sbjct: 65  TLCQDLRSLSATLPIIFLTARDSDIDSVHGLRLGADDYVTKDMSLEHLLARITALLRRAE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L+  ++    G + +  D      QG+   L   E  +L  L+ + G   ++ Q+
Sbjct: 125 AWAEALQKPDDILTRGKLTLNVDRMTVAWQGQPVDLTVTEFWMLHALVQHPGHVRSREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             A   + D    +N V SHI ++R+K       FD + +   +GY   WN
Sbjct: 185 MEAASTVLD----DNTVTSHIKRIRRKFSQLDDQFDGIQTAYGMGYR--WN 229


>gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+   ++ R IR  S +P+I ++        +   + G DD V KP   +E++ARV A+ 
Sbjct: 60  GKDGWDICREIRRMSDIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVL 119

Query: 117 RRLKVSN--NRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR    N  N     P  V   +    + Q +   LP +E  +L +L ++  K   + Q+
Sbjct: 120 RRYNQDNDANNVIVYPNLVIDKNTMLVKYQKKELELPPKEFELLYFLASHPNKVYTREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G FD   +   V+ H+++LR+K+
Sbjct: 180 LEQVWG-FDYYGDSRTVDVHVNRLREKI 206


>gi|329847401|ref|ZP_08262429.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328842464|gb|EGF92033.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 22/173 (12%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  RI+R      P+I ++   S   T+   D+G +D V KP     +LAR+ A  R  +
Sbjct: 66  EACRILRKGGLTTPVIMLTGQTSDSDTILGLDAGANDYVTKPFRFAVLLARIRAQVRSHE 125

Query: 121 VSNNRA-ETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            S +     GP      ++V  D    + +     L  +E  IL+YL    GK +++ ++
Sbjct: 126 TSEDATFRIGPYEFKPALKVLVDQTQKKTR-----LTEKETNILKYLYRAGGKPISREEL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL----GYSIDW 222
            + ++G ++  V  + +E+H+ +LR+K+      DP +++  +    GY + +
Sbjct: 181 LTEVWG-YNAGVTTHTLETHVYRLRQKIEP----DPANARLLMTDAGGYRLQF 228


>gi|323488492|ref|ZP_08093736.1| OmpR family DNA-binding response regulator [Planococcus donghaensis
           MPA1U2]
 gi|323397709|gb|EGA90511.1| OmpR family DNA-binding response regulator [Planococcus donghaensis
           MPA1U2]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVF 147
            D+G DD + KP    E+ AR+ A+ RR + +  R ET   G + +         Q E  
Sbjct: 92  LDAGADDYIVKPFEIEELWARLNALTRRTR-TPIREETVMIGELLLNRTSHTLYYQEEEI 150

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L  RE ++ E L+ NRG+ + +  I   I+GL D  V    +++ +  LRKK+      
Sbjct: 151 LLTPREFQLFELLVVNRGQVLTRELILDRIWGL-DAEVSLKTIDATVKLLRKKISRTSKE 209

Query: 208 DPVDSKRFLGYSID 221
           + + + R +GY I+
Sbjct: 210 EFIKAVRGVGYKIE 223


>gi|226310855|ref|YP_002770749.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093803|dbj|BAH42245.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 19/201 (9%)

Query: 34  FEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGISDYP 82
           +E W   SA + + A+E F   K + VL           E+ + IR  S  P+I ++   
Sbjct: 26  YEVW---SANDGLEAMELFDEKKPDLVLLDVMLPERNGWEILQYIREKSSCPVIIMTALG 82

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRD 139
                L   + G DD + KP    E++ARV A+ RR  +     ET   G +++      
Sbjct: 83  QTDQKLKGLNQGADDYITKPFVADEVVARVNAVLRRSVILVKDQETRLFGSLKINFQSHH 142

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             + G       R+  +L +L  N  +   + Q+   ++G+ D    +  V+  I ++RK
Sbjct: 143 VTLHGLELTFHPRDLSLLLFLAQNPNQTFTREQLIEQVWGM-DYGGSDRAVDLAIKRVRK 201

Query: 200 KLRN-KLGFDPVDSKRFLGYS 219
            L N  +    + ++R +GY 
Sbjct: 202 TLENWPVQEGEIKTQRGVGYQ 222


>gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 14/201 (6%)

Query: 13  DGYIALFGDDGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           D YIA    D  +L G+ +    + ++ L+ +   D   I   +   G    E+ + IR 
Sbjct: 10  DPYIAELQKDYFALHGYEAEICHDGQDGLKQALSGDYDLIILDIQLPGMSGFEICKTIRE 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRRLKVSNNRA 126
              VP++ +S        +  F  G DD V KP    E++AR  A    Y R K     +
Sbjct: 70  RLDVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHLARYERFKSGQKIS 129

Query: 127 ETGPIRVFSDGRDPEV------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +R+     +P        + EVF L  +E  +L ++  N  +  +K Q+F  I+GL
Sbjct: 130 PDDSLRIRELTINPSSHRVFVHEQEVF-LTAKEFEVLVFMATNPNRVFSKDQLFEKIWGL 188

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D   +   V  HIS++R+KL
Sbjct: 189 -DSNGDIATVTVHISRIREKL 208


>gi|167551081|ref|ZP_02344836.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205324105|gb|EDZ11944.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 240

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 6/155 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S +P++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K    +    AE+ P+ +          G+   L   E R+L+ L     K  
Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPSKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL +
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214


>gi|241518236|ref|YP_002978864.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240862649|gb|ACS60313.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 219

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 14/159 (8%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           + E  L L R IRA S +P+I +         L  F+SG DD ++ P   RE++AR+ ++
Sbjct: 40  RAEDALRLCRQIRAVSTIPIIAVVAQGREDIILAAFESGADDCISSPFGTREMIARIRSV 99

Query: 116 YRRLKVSNNR---AETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRG 165
            RR   S +R   + + P R F+  R    Q       G V  +   E  +L     N G
Sbjct: 100 LRR--ASRDRVIHSLSKPFR-FNGWRLDSWQRALRRPDGTVVDVTAAEFDLLVVFCQNPG 156

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           + +++ ++ ++ +      +E + ++ HIS+LR K+ + 
Sbjct: 157 RILSREELLASTHAGLAGPIERS-IDVHISRLRHKIEDN 194


>gi|160944474|ref|ZP_02091702.1| hypothetical protein FAEPRAM212_01984 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444256|gb|EDP21260.1| hypothetical protein FAEPRAM212_01984 [Faecalibacterium prausnitzii
           M21/2]
          Length = 223

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 13/171 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS---GVDDVVNKPIHHREILARVA 113
           GE    L   IR  S+VP+I ++   S  T +D  +S   G D  + KP +   +LA++A
Sbjct: 59  GENGFALCSKIRTFSEVPIIFVT---SCNTDMDELNSIMLGGDAFITKPYNTAILLAKIA 115

Query: 114 AIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++ ++   +  R +   G   +  +    +  G    L + E +IL YL  N GK  ++ 
Sbjct: 116 SLLKKTYPAQQREKIVYGDAVLHLESSSLDYNGRSVELTKNELKILYYLFKNGGKICSRG 175

Query: 172 QIFSAIYGLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I   I  L+D    V++N +  +I+++R+KL      D + +K   GY+I
Sbjct: 176 DI---IEYLWDNQLYVDDNALSVNINRIREKLAGIGLTDFIKTKHRQGYTI 223


>gi|21241531|ref|NP_641113.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106880|gb|AAM35649.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 238

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 25/173 (14%)

Query: 51  AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           A L G+G +++            E+ R IR  S VP+I ++        +   D+G +D 
Sbjct: 48  ALLAGQGAELVVLDIGLPDRDGHEVLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDY 107

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150
           V KP   +E++AR+ ++ R+    +   E+    VF DG        R+  + GE  PL 
Sbjct: 108 VTKPFGVQELMARIRSLLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLDGEAVPLS 163

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           R+E  +L  L+ + G+ V + Q+   ++G   E  + + +   + KLR+KL +
Sbjct: 164 RKEYALLALLLKHAGRVVTQPQLLREVWGPTHEE-DTHYLRILVGKLRQKLHD 215


>gi|83747530|ref|ZP_00944568.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|207721816|ref|YP_002252254.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|207744492|ref|YP_002260884.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|83725844|gb|EAP72984.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|206586982|emb|CAQ17566.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206595898|emb|CAQ62825.1| response regulator protein [Ralstonia solanacearum IPO1609]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 28/222 (12%)

Query: 8   RALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSS--AREDVSAIEAFLIGKGEKVLELP 64
           RAL +  ++     DG++ E F  S EF+  +      R+D  A+ A +  + ++     
Sbjct: 18  RALAQSSFVVERAADGLAAEAFLASGEFDAVVLDLRLPRKDGFAVLADMRARDDRT---- 73

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
                    P++ ++   +L   +   ++G DD + KP    E+ AR+ A+ RR   S  
Sbjct: 74  ---------PVLILTAQGALDERVRGLNAGADDFLTKPFAMSELEARLMALIRR---SRG 121

Query: 125 RA----ETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           RA      GP+  F  GR    + GE   L  RE   L  L+   G+ ++K  +F  ++ 
Sbjct: 122 RAFPRLRCGPLE-FDTGRKAFLLAGEALSLTPREHAALSALLHKTGQPISKVHLFDKVFN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L D     + VE  + +LRKKL    G   V + R LGY ++
Sbjct: 181 L-DSDSSPDAVEVVVHRLRKKLAGS-GVQIV-TVRGLGYLLE 219


>gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
 gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 19/201 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LVK+GY           E + + + EE L+     +   +   L+      LE+ R IR 
Sbjct: 17  LVKEGY-----------EVYTAFDGEEALEKVTEVEPDLVLLDLMLPKMDGLEVAREIRK 65

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NN 124
              +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   S      N
Sbjct: 66  TYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRREASSVKEEAGN 125

Query: 125 RAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ++E   G + +  D       GE   L  RE  +L YL  + G+ + +  +   ++G +D
Sbjct: 126 QSELTIGDLTIHPDAYMVSKAGENIELTHREFELLYYLARHLGQVMTREHLLQTVWG-YD 184

Query: 183 EAVEENVVESHISKLRKKLRN 203
              +   V+  + +LR+K+ +
Sbjct: 185 YFGDVRTVDVTVRRLREKIED 205


>gi|294630664|ref|ZP_06709224.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833997|gb|EFF92346.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 233

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 31/226 (13%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL +DG+      DG+S LE F +           R D++ ++  +   G   + L R I
Sbjct: 23  ALERDGFAVTAMPDGLSGLEAFRA----------DRPDIALLDVMV--PGLDGVSLCRRI 70

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------- 119
           R  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR         
Sbjct: 71  RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHAGGARA 130

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +V       G + V +DG +    G    L   E R+L    +  G  +++ ++ 
Sbjct: 131 AADSGEVDGGVLTFGDLEVDTDGMEVRRAGRPVALTPTEMRLLLEFSSAPGTVLSRDKLL 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +    +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 191 ERVWD-YGWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 231


>gi|293604231|ref|ZP_06686639.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817456|gb|EFF76529.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 219

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 12/134 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
            D+G DD + KP    E+LAR+ A+ RR   S  RAE       I +        V G  
Sbjct: 91  LDAGADDYIVKPYDVDELLARMRALIRR---SAGRAEPVFEHEGITIDPQAHAAMVDGTP 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  RE  +LE L+A  G   ++ Q+   +Y  + ++V  N VE +I  LRK    KLG
Sbjct: 148 VALTAREWAVLEPLIARPGMIFSRAQLEEKLYS-WKDSVSSNAVEVYIHGLRK----KLG 202

Query: 207 FDPVDSKRFLGYSI 220
            + + + R +GY I
Sbjct: 203 PNLIQNVRGVGYVI 216


>gi|238059052|ref|ZP_04603761.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237880863|gb|EEP69691.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 231

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 5/144 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R++RA S VP+I  +        +   D+G DD V KP    ++ AR+ A+ RR   
Sbjct: 62  ELLRMLRAVSAVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARIRAVLRRGAA 121

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G +RV    R   + G    L  RE  +L +L A  G+ V K ++ + +
Sbjct: 122 GAGAGDPALVVGGLRVDPRARQVTLDGVAVELTPREFDLLHHLAARPGEVVTKRELLTEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           + +     ++  V+ H+S LR+KL
Sbjct: 182 WQIPYGGADKT-VDVHLSWLRRKL 204


>gi|229161461|ref|ZP_04289442.1| Sensor histidine kinase [Bacillus cereus R309803]
 gi|228621998|gb|EEK78843.1| Sensor histidine kinase [Bacillus cereus R309803]
          Length = 231

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ     +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQMLCTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIR-----VFS 135
               +    +G DD + KP +  E++ARV A+ RR    NN   + E G IR     +  
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNNATQKKEDGIIRIRAAEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V  E   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTLKVNNEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETVMNGEKFIHTVWGVGYKIE 230


>gi|149377685|ref|ZP_01895421.1| Phosphate regulon transcriptional regulatory protein phoB
           [Marinobacter algicola DG893]
 gi|149358038|gb|EDM46524.1| Phosphate regulon transcriptional regulatory protein phoB
           [Marinobacter algicola DG893]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 12/156 (7%)

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++   A +++P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGVELARRLKKEEATAEIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   +    ET PI V     DP       +     +   E R+L++ M ++ +  
Sbjct: 119 AVLRR--TTPPGVET-PIEVDGLTLDPVGHRVTTETGALNIGPTEYRLLQFFMTHQERVY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
            ++Q+   ++G  +  VEE  V+ HI +LRK L ++
Sbjct: 176 TRSQLLDQVWG-GNVYVEERTVDVHIRRLRKALGDQ 210


>gi|33355848|gb|AAQ16268.1| response regulator [Enterococcus faecalis]
 gi|77380195|gb|ABA71727.1| VanRG [Enterococcus faecalis]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 28/148 (18%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD------------PE 141
           G DD + KP +  E+ ARV    RR    NN A+     V     D              
Sbjct: 95  GADDYITKPFNPLEVAARVKTQLRRYVCYNNAADIEKENVLVTEYDINGLVINKNTHKCT 154

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEENVVESHISKLRK 199
           + G+   L   E  +L YL  NRGK ++  ++F  ++G    D     N V +HI +LR+
Sbjct: 155 LYGKAVTLTPIEFSVLWYLCENRGKVISSEELFENVWGEKFLD---NNNTVMAHIGRLRE 211

Query: 200 KLRNKLGFDPVDSKRFL------GYSID 221
           KL+     +P  + +F+      GY+I+
Sbjct: 212 KLK-----EPARNPKFIKTVWGVGYTIE 234


>gi|58580728|ref|YP_199744.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425322|gb|AAW74359.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 297

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++    ++  +   D G DD + KP   RE  AR   + RR     NR +   + 
Sbjct: 137 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRR-----NRGQASEVV 191

Query: 133 -----VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
                VF +      + G    LP RE R+ + L+   G+ V K +I + ++G FD+   
Sbjct: 192 QIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG-FDDDAG 250

Query: 187 ENVVESHISKLRKKL 201
            N +E ++ +LR+KL
Sbjct: 251 PNAIELYVGRLRRKL 265


>gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 9/142 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I ++        +   + G DD + KP   RE++AR+ A+ RR  V     
Sbjct: 69  IRKVSKVPIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAVLRR--VGTEEK 126

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + G +  F         R+  V+ +   L  +E  +L  L  + G+  ++ Q+   ++G 
Sbjct: 127 KEGHLLKFPGMCMDLISREVLVKDKPITLTPKEFELLALLAKSTGRSYSREQLLEEVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLR 202
           FD   +   V++H+++LR KLR
Sbjct: 186 FDYYGDVRTVDTHVNRLRDKLR 207


>gi|163846512|ref|YP_001634556.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524297|ref|YP_002568768.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163667801|gb|ABY34167.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448176|gb|ACM52442.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 227

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  + +P++ ++     +  +   + G DD V KP ++ E+LAR+ A+ RR+  +N   
Sbjct: 70  VREFASLPILMLTARTMPEDIITGLNQGADDYVIKPFNYDELLARIRALLRRVPATNRPL 129

Query: 127 ETGPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             G   +  D R  E  V+GE+  L   E ++L  L  + G+ V   Q+  A++G   E 
Sbjct: 130 TVGNNLISIDQRKREVRVRGELVDLTPTEYQLLLVLAEHAGEVVTHEQLLRAVWG--SEP 187

Query: 185 VEEN-VVESHISKLRKKL 201
           + +N  ++ +I  LR+K+
Sbjct: 188 MRDNDYLKVYIWHLRRKI 205


>gi|320527693|ref|ZP_08028865.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320131936|gb|EFW24494.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 222

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 13/206 (6%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE---LPRIIRAHSQVPLIGISD 80
             + GF + E E  L +  +   +  +  ++     VL+     + I++  QVP+I +S 
Sbjct: 21  CEINGFETEEAENGLVAIEKVKNTHFDCVILDVMMPVLDGFSTCKQIKSIDQVPVIMLSA 80

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDG 137
                  L  F+ GVDD V KP   +E++AR+  +  R K +   ++      +++   G
Sbjct: 81  RQEEYDKLFGFELGVDDYVTKPFSPKELIARIKVVLERGKKTQANSDVMIFKGLQIDVLG 140

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R   V GE  PL  +E  +L YL  +    +++  +   ++  +D   ++  V++HI   
Sbjct: 141 RVVTVDGEKAPLTPKEIDLLLYLATHPNVALSRETLLVEVWN-YDYFGDDRTVDTHI--- 196

Query: 198 RKKLRNKLG--FDPVDSKRFLGYSID 221
            K LR+ LG   D + + R +GY  +
Sbjct: 197 -KMLRHNLGPYRDFITTVRGMGYKFE 221


>gi|305675621|ref|YP_003867293.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|305413865|gb|ADM38984.1| two-component response regulator controlling resistance to
           antibiotics affecting the envelope (YtsB) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 231

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 15/146 (10%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R+IR+ S VP++ +S  D+P+    +     G DD + KP H   ++A++ AI+RR  V 
Sbjct: 65  RLIRSRSNVPILFLSSRDHPA--DMVMSMQLGADDFIQKPFHFDVLIAKIQAIFRR--VH 120

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   E   I+ +        Q  V        L + E  IL+ L+  + K V++ ++  +
Sbjct: 121 HYNTEPSTIKTWCGAAIDAEQNLVSNDEGSVELTKNEMFILKQLIEQKNKIVSREELIRS 180

Query: 177 IYGLFDEA-VEENVVESHISKLRKKL 201
           ++   DE  V +N +  ++++LRKKL
Sbjct: 181 LWN--DERFVSDNTLTVNVNRLRKKL 204


>gi|295426129|ref|ZP_06818796.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064165|gb|EFG55106.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + +R  S +P+I +S   S    +    +G DD V+KP +  E++ARV ++ RR  
Sbjct: 61  IEVIKEVRKDSDIPIIVVSAKTSDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 120

Query: 120 -KVSNNRA---ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
            +V + +    E GP+ +  D  + + + G+   L   E  IL YL+A+   RV +  +I
Sbjct: 121 KQVKDEKPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGIL-YLLASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K++   G  D + +   +GY ++
Sbjct: 180 FERVWQQ-ESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|294497050|ref|YP_003560750.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294346987|gb|ADE67316.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 225

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++ +      +I ++   S++  +   D G DD + KP    E+ AR+  + R L+  
Sbjct: 63  LKKLRKQKVLTKVIFLTAKDSVEDRVKGLDYGADDYLVKPFAMAELFARLRVMLRDLQAE 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 GPI +     +  + G    L  +E ++LEY + N+ + + + QIF+ ++G F 
Sbjct: 123 EGMISYGPISIREANHEVMINGSALTLTIKEFQLLEYFIRNKEQILIRDQIFNRVWG-FT 181

Query: 183 EAVEENVVESHISKLRKKLR 202
             V   VV+ ++  LRKKL+
Sbjct: 182 SDVGVGVVDVYVHHLRKKLQ 201


>gi|293603732|ref|ZP_06686151.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817906|gb|EFF76968.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 5/150 (3%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
             G  VL+  R   A + +P++ ++     ++ +   ++G DD + KP+  RE+LAR++A
Sbjct: 57  ASGLAVLKWARCNLA-ATLPILMLTQRDDEESIVQALNTGADDYLQKPVRERELLARMSA 115

Query: 115 IYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             R+ +   V+  + + G      D +   V G    LP RE  +   L  + G+ + K 
Sbjct: 116 QLRKSQRGDVNPGQFQVGHFAFNLDAKTLTVDGRPVSLPTREFDVATMLFRSPGRIITKD 175

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +   I+G  D   + ++  +++S LR  L
Sbjct: 176 ALCQHIWGTVDRKYDASLA-TYVSNLRSSL 204


>gi|257092042|ref|YP_003165683.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257044566|gb|ACV33754.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 226

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 4/162 (2%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA +S  P++ ++        +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LDVLRRLRARNSSTPILILTALDGTDDRVKGLDLGADDYMAKPFELAELEARVRALSRRS 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G +      R   V GE+  L  RE  +LE L+    + V+K Q+   + G
Sbjct: 120 SGTSRMIQCGSLTFDQTDRCALVNGEMLDLSARELGLLEILLLRAKRLVSKDQLVDHLCG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKKL    G + + + R LGY ++
Sbjct: 180 -WGEEVSHNAIEVYVHRLRKKL-EATGVNII-TVRGLGYYLE 218


>gi|261404482|ref|YP_003240723.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261280945|gb|ACX62916.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 24/184 (13%)

Query: 46  VSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105
           +  ++ F +G+        R+ +A+  +P++ +S   S+   L   +   DD + KP H 
Sbjct: 54  LPGLDGFTVGQ--------RLKKAYPGLPILMLSARTSIDDKLQGLEFA-DDYLTKPFHP 104

Query: 106 REILARVAAIYRRLKVSNNRAETGPIRV--FSDGRDP-----EVQGEVFPLPRRERRILE 158
            E+ AR+  + RR  V +      PIRV   S   D      E  GE   L  ++ +I  
Sbjct: 105 DELAARLEVLLRRSVVKSAE----PIRVKHLSVYEDENRIVNEDTGEETLLTGKQHQIFM 160

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHISKLRKKL-RNKLGFDPVDSKRFL 216
           YL+ ++G+ + K QI+ +++G  +  +E +  +  HI  LR+KL R+    + +++ R L
Sbjct: 161 YLLQHQGRVMTKEQIYESVWG--ESYIEGDKTLMVHIRYLREKLERDPANPEIIETVRGL 218

Query: 217 GYSI 220
           GY +
Sbjct: 219 GYRV 222


>gi|206969522|ref|ZP_03230476.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206735210|gb|EDZ52378.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
 gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 225

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 5/143 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S +P+I ++        +   + G DD + KP + RE+ AR+ A+ RR      
Sbjct: 65  REIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALLRRATNPYT 124

Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +     G + +    R    +G+   L  +E  IL  L +N GK   K ++   I+G 
Sbjct: 125 KRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLIWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
           FD   + N V  H+ KLR+K+ +
Sbjct: 184 FDFYGDTNTVTVHVRKLREKIED 206


>gi|302530063|ref|ZP_07282405.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438958|gb|EFL10774.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 45  DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           DV  ++  L G  G +VLE  R     + V L+   D    Q   D  D G D  + KP 
Sbjct: 51  DVVLLDIMLPGLSGYRVLERLRAENVTTPVLLVSAKDGEIDQA--DGLDLGADGYLVKPF 108

Query: 104 HHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
               ++A+V A+ RR     +R   + G + V    R     G+  PL  RE  +LE L+
Sbjct: 109 SFVVLVAQVRAVLRRAGPDASRGALKLGALEVDRALRQVRWDGQEVPLSPREFGLLEVLV 168

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              G  V K ++  A++G  ++AV  N+VE ++  +R+KL
Sbjct: 169 GRAGTVVTKDELLRAVWG-EEQAVTRNLVEVYVGYVRRKL 207


>gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 239

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFSDGRDPEVQGEVFP 148
           G DD V KP    E++ R+  I RR  V+        IR     +  D  +    GE+  
Sbjct: 103 GADDYVTKPFSLEEVITRLRVILRRGNVTETETGDSTIRYADLTLNDDTHEVTKAGEIVE 162

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L   E  +L YLM N    ++K +I   ++  +D   + NVVES+IS LR+K+
Sbjct: 163 LSPTEFNLLRYLMLNAEVVLSKAKILDNVWH-YDFGGDGNVVESYISYLRRKV 214


>gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 239

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 22/198 (11%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQ 85
           EG   LE   W          A+   L+  G   LE+ R  RA ++  P+I  S   S  
Sbjct: 39  EGLRLLEQGGW---------DALILDLMLPGVDGLEICRRARAMTRYTPIIITSARSSEV 89

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDP--- 140
             +   + G DD + KP    E++ARV A+ RR+     ++R + G + V     DP   
Sbjct: 90  HRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRLDAGTLDVAGLAIDPIAR 149

Query: 141 --EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G    L  RE  +L +   + GK  ++  + +A++G   E   E+ V +HI++LR
Sbjct: 150 EASVDGARIDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLR 208

Query: 199 KKLRNKLGFDPVDSKRFL 216
            K+      DP +  R L
Sbjct: 209 AKIEA----DPAEPVRIL 222


>gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20]
 gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIR----VFSDGRDPEVQ-GEVF 147
           G DD + KP   RE++ARV A+ RR +V +   AE+  I+    V  D +    +  ++ 
Sbjct: 95  GADDYITKPFSPREVVARVKAVLRRSQVDHQVVAESDVIKVQNVVIDDNKKVVTRDNQIL 154

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLG 206
            L  RE  +L Y     G+ + +  I +A++G ++   E  +V+ HIS LR+K+  N   
Sbjct: 155 TLTPREYELLLYFAHRIGRVIDRETILTAVWG-YEFTGESRMVDMHISNLREKIETNPKS 213

Query: 207 FDPVDSKRFLGYSI 220
              + + R  GY++
Sbjct: 214 PQLLKTVRGFGYTL 227


>gi|29831247|ref|NP_825881.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|81838270|sp|Q82EB1|CSEB_STRAW RecName: Full=Transcriptional regulatory protein CseB
 gi|29608362|dbj|BAC72416.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 33/228 (14%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL +DG+      DG+S LE F +           R D++ ++  +   G   + L R I
Sbjct: 23  ALERDGFAVTAMPDGLSGLEAFRA----------NRPDIALLDVMV--PGLDGVSLCRRI 70

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------- 119
           R  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR         
Sbjct: 71  RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHASGPNS 130

Query: 120 -KVSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               ++ A  G +  F      ++G +    G+   L   E R+L    +  G  +++ +
Sbjct: 131 RPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFSSAPGTVLSRDK 190

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++  +    +  VV+ H+    ++LR K+G D +D+ R  GY +
Sbjct: 191 LLERVWD-YGWGGDTRVVDVHV----QRLRTKIGQDRIDTVRGFGYKL 233


>gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis]
          Length = 240

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 15/141 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----------GPIRVFSDGRDPEV 142
           G DD + KP   RE+ ARV AI RR ++    +E            G +++  D  +   
Sbjct: 96  GADDYMTKPFSPREVNARVKAILRRSEIRAPSSEMKNDEMEGQIVIGDLKILPDHYEAYF 155

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +     L  +E  +L YL  ++G+ + +  + SA++  +D A +  +V+ HIS LR K+ 
Sbjct: 156 KESQLELTPKEFELLLYLGRHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIE 214

Query: 203 NKLGFDPVDSK--RFLGYSID 221
           N     P+  K  R LGY ++
Sbjct: 215 NNTK-KPIYIKTIRGLGYKLE 234


>gi|310642107|ref|YP_003946865.1| response regulator (chey-like receiver domain and hth-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
 gi|309247057|gb|ADO56624.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 20/213 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKG 57
           + V+ DD+ +VK           +S EGF ++     +E L +     +  I   ++  G
Sbjct: 5   ILVVDDDKDIVK------LITKSLSYEGFETIPAYSGKEALCALKENHIDFIILDIMMPG 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              L++ R IR     P++ +S        +   + G DD + KP   +E+ +R+ A +R
Sbjct: 59  MNGLDVCRSIRNSYNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFR 118

Query: 118 RL--------KVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           ++        ++S NR  T    + +D   +  +      L  +E +IL  LM N    +
Sbjct: 119 KVDRLLKEWNELSPNRERTDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLMHNPNNVL 178

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + +I+  ++G  DE  E N V  HI  +RKKL
Sbjct: 179 TRERIYEYVWG--DEYGELNTVTVHIKNIRKKL 209


>gi|302670905|ref|YP_003830865.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395378|gb|ADL34283.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 232

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 15/172 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           + L + +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 61  IRLVKEVRRFSTIPVIFLSAKSEDADKILGLNIGADDYITKPFNPLELIARVKSNLRRYT 120

Query: 120 ----KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +V+N+   T G + +  + ++  V GE   L   E  IL +L+ N+GK  +  QI+
Sbjct: 121 TLGSEVTNDNVYTVGGLVIDDNSKECFVFGENIKLTPVEYNILCFLVKNKGKVYSIEQIY 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
             I+        +N +  HI  +R+K+      +P D K       +GY I+
Sbjct: 181 EHIWNESVGGRSDNTIAVHIRHIREKIE----INPKDPKFLKVVWGVGYKIE 228


>gi|229147642|ref|ZP_04275986.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228635851|gb|EEK92337.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
          Length = 223

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I +S   +    +   + G DD + KP +   ++A++ A+ RR   S  
Sbjct: 64  RKIREVSKVPIIFLSSRDNPMDMVMAMNMGGDDFMQKPFYTDVLVAKIQALMRR-TYSYT 122

Query: 125 RAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ET  +    V  + +  EV    ++  L + E +IL+ LM N G  V++  I   ++ 
Sbjct: 123 QTETNVVEYEGVLLNLQSGEVTYHNQILELTKNEFKILQILMQNIGSIVSRDNIMRKLWE 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  V++N +  +++++RKKL      + + +K+  GY I
Sbjct: 183 -NESFVDDNTLTVNVARVRKKLAELGKEEFIHTKKGQGYII 222


>gi|229163529|ref|ZP_04291479.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           R309803]
 gi|228619911|gb|EEK76787.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           R309803]
 gi|324328428|gb|ADY23688.1| two-component response regulator ycbL [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G+   L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|209517424|ref|ZP_03266266.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209502191|gb|EEA02205.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 6/151 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129
           S+VP++ ++    L   +   D G DD V KP H  E+LAR+ A+ RR    +++R    
Sbjct: 71  SKVPILILTARDDLDARVQGLDFGADDYVLKPFHLPELLARIRAVLRRKAGFASSRLGND 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +  D R     G    L  RE  ++   +   G  +++ Q+   +YG + + VE N 
Sbjct: 131 TLNLDLDKRTLCCNGVSSVLSAREFALMFAFLERPGTILSRDQLEGKLYG-WGKEVESNA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V+  I  +RK    K G   + + R LG+++
Sbjct: 190 VDVLIHGVRK----KFGQSVIRNVRGLGWTV 216


>gi|206975972|ref|ZP_03236882.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217961929|ref|YP_002340499.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|206745724|gb|EDZ57121.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217066754|gb|ACJ81004.1| DNA-binding response regulator [Bacillus cereus AH187]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQADQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans]
 gi|133738246|emb|CAL61291.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Herminiimonas arsenicoxydans]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 7/167 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++L   R  R  +++P+I ++     +  +   D+G DD V KP   RE+ AR+ A+ 
Sbjct: 64  GLRLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALL 123

Query: 117 RRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR    + +     G I +        +  E   +   E ++L++ +A+  +  +++Q+ 
Sbjct: 124 RRKTPEHAQTLMTAGSISLDPISCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLL 183

Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G  D  V EE  V+ H+ +LRK L+       + + R +GY +
Sbjct: 184 DKVWG--DHVVIEERTVDVHVLRLRKALKEAEHL--IKTVRSVGYML 226


>gi|159038626|ref|YP_001537879.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157917461|gb|ABV98888.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 7/167 (4%)

Query: 41  SAREDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           +ARED   +    L+  G   +E+ R +R  S   +I ++        L     G DD +
Sbjct: 41  AAREDEPDVVVLDLMLPGLDGVEVCRRLRTFSDCYVIMLTARTEEADKLTGLGVGADDYL 100

Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRER 154
            KP   RE++ARVAA+ RR +    R E      GP+ V    R+  + G   PL R E 
Sbjct: 101 TKPFSPRELVARVAAMQRRPRQPRGRPEPAPRRFGPLEVDVPAREARLDGAPVPLTRTEF 160

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +L  L A     +++ ++ +A++G      +E++V+ HI  LR+KL
Sbjct: 161 DLLAVLSARPNVVLSRAELITAVWG-EGWVGDEHLVDVHIGHLRRKL 206


>gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
 gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
          Length = 240

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 13/140 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAETGP------IRVFSDGRDPEV 142
           G DD + KP   RE+ ARV AI RR++     V+ N    G       + ++    +  V
Sbjct: 96  GADDYMTKPFSPREVTARVRAILRRIEQTGGAVAKNEQGKGKSIQIADLTIYPQNYEVYV 155

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           + E+  L  +E  +L YL  ++G+ + + Q+ +A++  ++   +  +V+ HIS LR K+ 
Sbjct: 156 KKELLTLTPKEFELLVYLADHKGRVLTRDQLLNAVWN-YEFVGDTRIVDVHISHLRDKIE 214

Query: 203 -NKLGFDPVDSKRFLGYSID 221
            N      + + R LGY ++
Sbjct: 215 PNSKKPVYIKTIRGLGYKLE 234


>gi|331017288|gb|EGH97344.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 222

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 24/227 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   + D  +A  G  G +++         +  +S   D+  ++  L G  G +V
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L+  R        P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 63  LQ--RWRGKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+ +    + G   V  DG D ++    F       R+L Y M + G+ ++K+
Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGTDIQLTSAEF-------RLLRYFMLHPGQILSKS 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   +Y   +E  + NV+E H++ LR+    KLG   ++++R  GY
Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVIETRRGQGY 215


>gi|260902480|ref|ZP_05910875.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ4037]
 gi|308109776|gb|EFO47316.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ4037]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 20/221 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + L++ GY+     DGV  +G      EE+       D+  ++  L    G +VL   R 
Sbjct: 18  KGLIESGYVVDLVHDGV--DGLYHATSEEY-------DLILLDIMLPKLDGWQVLNTLRS 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
              H+  P+I ++    ++  +  F+ G +D V KP    E+LARV  ++R    +   A
Sbjct: 69  SGIHT--PVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHIAAQVVA 126

Query: 127 ETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
               +RV     D         G+   L  +E  +LE LM   G+ +++T I S ++ + 
Sbjct: 127 SPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIASLVWDMN 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + NV++  + +LR K+        + + R +GY ++
Sbjct: 187 FDS--DTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLE 225


>gi|256851719|ref|ZP_05557107.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661563|ref|ZP_05862475.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282933547|ref|ZP_06338917.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|297205337|ref|ZP_06922733.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615677|gb|EEU20866.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547620|gb|EEX23598.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281302290|gb|EFA94522.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|297149915|gb|EFH30212.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 237

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 12/171 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121

Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +           N     G + +  D    E  G+   L  RE  +L YL ++ G+ + +
Sbjct: 122 IVQKQVDENENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +    +G +D   +   V+  + +LR+K+  N +    + ++R +GY +
Sbjct: 182 EHLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYV 231


>gi|77464845|ref|YP_354349.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77389263|gb|ABA80448.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 7/155 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  SQVP+I +S        +   D+G  D V KP    E LAR+ A+ R   
Sbjct: 64  IEVLRTVRGWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRS 123

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +      + +    R   V G    L RRE  +L  L +  G+ V +  I   I+
Sbjct: 124 GPAAPSVISVAELEIDLAARRVSVSGTEVKLTRREFDLLRLLASQAGRLVTQAMILRTIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           G    A EE+    ++    ++LR KLG D  D +
Sbjct: 184 G---PAHEED--SQYLRVYIRQLRAKLGDDAADPR 213


>gi|28897135|ref|NP_796740.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361433|ref|ZP_05774492.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           K5030]
 gi|260878046|ref|ZP_05890401.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AN-5034]
 gi|260896941|ref|ZP_05905437.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           Peru-466]
 gi|28805344|dbj|BAC58624.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088763|gb|EFO38458.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           Peru-466]
 gi|308089716|gb|EFO39411.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AN-5034]
 gi|308111004|gb|EFO48544.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           K5030]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 20/221 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + L++ GY+     DGV  +G      EE+       D+  ++  L    G +VL   R 
Sbjct: 18  KGLIESGYVVDLVHDGV--DGLYHATSEEY-------DLILLDIMLPKLDGWQVLNTLRS 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
              H+  P+I ++    ++  +  F+ G +D V KP    E+LARV  ++R    +   A
Sbjct: 69  SGIHT--PVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHIAAQVVA 126

Query: 127 ETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
               +RV     D         G+   L  +E  +LE LM   G+ +++T I S ++ + 
Sbjct: 127 SPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIASLVWDMN 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + NV++  + +LR K+        + + R +GY ++
Sbjct: 187 FDS--DTNVIDVAVKRLRSKVDKPFDRPLIHTVRGMGYKLE 225


>gi|26989626|ref|NP_745051.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|148547998|ref|YP_001268100.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|24984509|gb|AAN68515.1|AE016483_6 DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|148512056|gb|ABQ78916.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|313499075|gb|ADR60441.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 226

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 5/151 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGP 130
            P++ IS    +   +    +G DD + KP    E+ ARV  + RR  V  +  R +   
Sbjct: 74  TPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPTTQTRLQVAD 133

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189
           +++     +         L   E ++LEYLM + G+ + +  IF  ++G  FD     N+
Sbjct: 134 LQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWGYHFDPGT--NL 191

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ HI +LRKK+ +      + + R  GY+I
Sbjct: 192 IDVHIGRLRKKIDSPGQSPLIRTVRGSGYAI 222


>gi|325168770|ref|YP_004280560.1| transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325064493|gb|ADY68182.1| two component transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 18/166 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
           IR  S  P+I ++        L     G DD V KP +  E++AR  A+ RR+  +  ++
Sbjct: 69  IRRVSDTPVIMVTALADDLDKLQALRIGADDYVVKPFNPLEVVARAKAVLRRVAGRSPDH 128

Query: 125 RAETGPIRVFSDGRDPEVQGEV---------FPLPRRERRILEYLMANRGKRVAKTQIFS 175
               GP+RV     DP+    V           L R E RIL ++ A+  +   ++++  
Sbjct: 129 VMRVGPLRV-----DPQAHRAVVETGSDHVTLDLTRTEFRILAHMAASPNRVFERSELVD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A   L +    +  V+SH+S LR+KL        +   R +GY ID
Sbjct: 184 AC--LPEGEALDRTVDSHVSNLRRKLTAAGAGGVLTGVRGVGYRID 227


>gi|311696245|gb|ADP99118.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++   + + +P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGVELARRLKKEESTADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   +       PI V     DP       Q     +   E R+L++ M ++ +  
Sbjct: 119 AVLRR---ATPPGVDSPIEVEGLTLDPVGHRVTTQDGALTMGPTEYRLLQFFMTHQERVY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
            ++Q+   ++G  +  VEE  V+ HI +LRK L ++
Sbjct: 176 TRSQLLDQVWG-GNVYVEERTVDVHIRRLRKALGDQ 210


>gi|312140719|ref|YP_004008055.1| two component system response regulator [Rhodococcus equi 103S]
 gi|325675642|ref|ZP_08155326.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|311890058|emb|CBH49376.1| putative two component system response regulator [Rhodococcus equi
           103S]
 gi|325553613|gb|EGD23291.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 226

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 19/172 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTT-----LDF---FDSGVDDVVNKPIHHREILARV 112
           LE+ R +RAHS        D   L  T     +DF    D+G DD V KP    E++ARV
Sbjct: 61  LEVCRQLRAHSL-------DLAVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELMARV 113

Query: 113 AAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A+ RR     +   E   IR+    R   V G    L  +E  +L  L+ + G+ V++ 
Sbjct: 114 RALLRRSGGGEDVVVEVAGIRLEPAARRVLVNGSEIALANKEYELLRVLLEHAGQVVSRD 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFD-PVDSKRFLGYSID 221
            I   ++G   E      ++ H+S LR+K+ ++  G D  + + R +G+ I+
Sbjct: 174 TILREVWGDV-ELRGSKTLDMHMSWLRRKIGDEGAGADRKIATVRGVGFRIN 224


>gi|293371962|ref|ZP_06618363.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CMC 3f]
 gi|292633080|gb|EFF51660.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CMC 3f]
          Length = 248

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 12/166 (7%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL + IR  +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R 
Sbjct: 81  FELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR- 139

Query: 120 KVSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            V+ N  E     V++D R      D E       L  +E  +L Y++ N  + +++ +I
Sbjct: 140 -VAGNAQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEI 198

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              ++   FD     N ++ +I+ LRKK+        + +K  +G+
Sbjct: 199 AEKVWNTHFDTGT--NFIDVYINYLRKKIDRDFEPKLIHTKAGMGF 242


>gi|302549204|ref|ZP_07301546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302466822|gb|EFL29915.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 247

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 9/136 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           QV ++ ++   +++  +    +G DD V KP    E+LAR+  + RR  +S  R    P 
Sbjct: 92  QVCVLFLTARDAVEDRIAGITAGGDDYVTKPFALEEVLARLRGLVRRAGMS--READAPR 149

Query: 132 RVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            V +D       R+    G +  L R E  +L +LM N  + ++K QI   ++  +D   
Sbjct: 150 LVVADLVMDEEAREVTRSGRIVELSRTEFELLRFLMRNPRRVLSKEQILDRVWS-YDFGG 208

Query: 186 EENVVESHISKLRKKL 201
             +VVE +IS LRKK+
Sbjct: 209 RAHVVELYISYLRKKI 224


>gi|255024215|ref|ZP_05296201.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           J1-208]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR  
Sbjct: 60  MTICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQI 173
            ++N        ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+
Sbjct: 120 STSNAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G +    +E  V+ HI +LR+K+
Sbjct: 180 LEQVWG-YQFYGDERTVDVHIKRLRQKI 206


>gi|237803521|ref|ZP_04591106.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025503|gb|EGI05559.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 282

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 19/195 (9%)

Query: 39  QSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           Q+ + E    +   L+  GE  L L R +R+ S +P++ ++        +   + G DD 
Sbjct: 90  QALSNETFDVVVLDLMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDY 149

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPR 151
           + KP   RE++AR+  I RR  V + R++      F   R   V        G V PL  
Sbjct: 150 MAKPFEPRELVARIQTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSN 207

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-- 209
            E R+L   +    + +++ Q+  A  G   EA + +     I  L  +LR KLG DP  
Sbjct: 208 AEFRLLRVFLERPHRVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDPKN 262

Query: 210 ---VDSKRFLGYSID 221
              + + R  GY  D
Sbjct: 263 PQLIKTVRGEGYLFD 277


>gi|229823027|ref|ZP_04449096.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271]
 gi|229787466|gb|EEP23580.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 84/160 (52%), Gaps = 3/160 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           L RI    + VP++ ++   ++   +   D G DD + KP    E+LAR+  + RR    
Sbjct: 69  LERIRLQENPVPVLLLTARDAVTDKIRGLDLGADDYMVKPFEFEELLARLRVLLRRPLRH 128

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +++ E GPIR+    +     G+   L  +E  +LEYL+ N+ + +++ QI   ++  
Sbjct: 129 ILSDQVEIGPIRLILSQKRVLKDGQAVNLTAKEYEVLEYLVRNQNQVLSREQIRHHVWD- 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++  E N ++  I  +R+KL ++     + +KR LGY +
Sbjct: 188 YEQEAESNTIDVLIKNIRRKLDSEGQPSLIQTKRGLGYVV 227


>gi|229032091|ref|ZP_04188072.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228729231|gb|EEL80227.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SVAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIQNAIVTKRGYGYAL 225


>gi|229184192|ref|ZP_04311401.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228599307|gb|EEK56918.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 71  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 131 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 190 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 225


>gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
 gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
          Length = 244

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 4/162 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+   IR  S VP+I ++   +    L+ F  G D+ ++KP   + ++ RV +I +R  
Sbjct: 83  LEVCAEIRKLSDVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSILKRAG 142

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + ++    G +++        V  +   L  RE  +L YL+AN+   + + QI  A++G
Sbjct: 143 LLQDSEFNMGNLKISYREHSVYVDDQRISLTPREYDLLCYLVANKNIVLNREQILQAVWG 202

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D   +   V++HI  LR K+     +  + + R +GY  +
Sbjct: 203 M-DYEGDIRTVDTHIKCLRIKIPGAQEY--IKTIRKIGYKFE 241


>gi|158338366|ref|YP_001519543.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308607|gb|ABW30224.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 10/199 (5%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL  +GY  +   DG +      L F+   Q ++  D+  ++  L   G   ++L R IR
Sbjct: 20  ALQSEGYRVITAADGQTALDVIQL-FKSRSQQASTLDLIILDIML--PGINGIDLCRFIR 76

Query: 69  AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
              S VP++ +S   +    +   + G DD + KP   RE++AR  A+ RR +++N   +
Sbjct: 77  REGSTVPVLMLSAKDTEADRVVGLEVGADDYLTKPFGMRELIARCRALLRRQRLNNTDPQ 136

Query: 128 TGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              +        P+     V+ E   L  +E RILE  M+   +   + QI   I+G  D
Sbjct: 137 GTLLTCREISLHPDECRVMVRDEEVNLSPKEFRILELFMSYPRRVWPREQILEKIWGP-D 195

Query: 183 EAVEENVVESHISKLRKKL 201
              +   V+ HI  LR+K+
Sbjct: 196 YIGDSKTVDVHIRWLREKI 214


>gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 269

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 13/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   + 
Sbjct: 87  RRLRAESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRGSA 146

Query: 125 RAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            AE             G + V ++ R     GE   L   E  +LE L    G+ V + +
Sbjct: 147 AAEPREATPGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVPRAE 206

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201
           I   ++G     A +  VV+ ++++LR KL
Sbjct: 207 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 236


>gi|295091969|emb|CBK78076.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRAET 128
           ++P++ ++   S    +   D G DD + KP    E  AR+  + +R    K        
Sbjct: 79  KIPVMMLTAKDSELDVVAGLDGGADDYMTKPFGILEFSARIRNLLKRFSDDKQEGKNLSV 138

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G I +  + R+  ++G+   L  +E  +L YLM N  + V + ++   I+G +D   E  
Sbjct: 139 GDISIDLEKREVRMRGQEVELTLKEYELLCYLMENTSRVVTREELLDRIWG-YDYDGETR 197

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ HI  LR+KL        + + R +GY I
Sbjct: 198 TLDMHIKTLRQKLGE--AGHSIKTVRGVGYRI 227


>gi|241764238|ref|ZP_04762270.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241366407|gb|EER60924.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 233

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 4/134 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           +Q+P++ ++     +  ++   SG DD + KP+   E+ ARVAA+ RR   ++   E   
Sbjct: 72  AQLPILFVTHRQEERDIIEGLGSGADDFMVKPVRIGELSARVAALLRRAYPASAGGEIVE 131

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G  R  S+ R  E+ G    L  RE  +  +L  N G+ +++  +   I G   + +  
Sbjct: 132 FGRYRFLSETRSIEIDGVPVELKNREYDLALFLFQNMGRLLSRDHLKEIILGQVADVMSR 191

Query: 188 NVVESHISKLRKKL 201
           + +++HIS+LR  L
Sbjct: 192 S-LDTHISRLRTLL 204


>gi|228941607|ref|ZP_04104154.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974536|ref|ZP_04135102.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981131|ref|ZP_04141431.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228778331|gb|EEM26598.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228784939|gb|EEM32952.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817819|gb|EEM63897.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942219|gb|AEA18115.1| two-component response regulator yvcP [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 252

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 82  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 141

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 142 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 199

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 200 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 242


>gi|229048244|ref|ZP_04193812.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH676]
 gi|228722969|gb|EEL74346.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH676]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G+   L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|229175113|ref|ZP_04302629.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228608249|gb|EEK65555.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SVAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIQNAIVTKRGYGYAL 225


>gi|222875029|gb|EEF12160.1| predicted protein [Populus trichocarpa]
          Length = 175

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 83/171 (48%), Gaps = 12/171 (7%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L L R  RA S+   VP++ ++        +   D+G DD + KP   +E+LAR+ 
Sbjct: 4   GASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 63

Query: 114 AIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR       ++   G + + +       QG++  +   E ++L YLM +  +  ++ 
Sbjct: 64  AVLRRRAPEQIQDKVNIGELVLDAAAHRVSWQGDMIKVGPTEFKLLHYLMKHPERVHSRA 123

Query: 172 QIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+   ++G  +F   +EE  V+ H+ +LR+ L   +    +++ R  GY +
Sbjct: 124 QLLDKVWGDHVF---IEERTVDVHVKRLREAL--GMAGALIETVRGAGYRL 169


>gi|124009093|ref|ZP_01693776.1| response regulator DrrA [Microscilla marina ATCC 23134]
 gi|123985307|gb|EAY25227.1| response regulator DrrA [Microscilla marina ATCC 23134]
          Length = 232

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 11/139 (7%)

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-PIRVFSDGRDPE---VQ 143
           L  FD G DD + KPI  R +L+R+AA++RR +  + + E    I+V +   D E   V 
Sbjct: 96  LAAFDVGADDYITKPIRPRALLSRIAALFRREQKKHQKNEKKDKIQVGNLTIDRESYIVY 155

Query: 144 GEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +  P  LP++E  +L +L  N  K  ++ ++   I+G  D  V    V+ HI    +K+
Sbjct: 156 NDKTPITLPKKEFEMLFFLAQNPNKVFSRDELLQNIWGT-DVYVLARTVDVHI----RKV 210

Query: 202 RNKLGFDPVDSKRFLGYSI 220
           R K+G   + + + +GY +
Sbjct: 211 REKIGGGYIKTVKGVGYKL 229


>gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 233

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 10/151 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLRRYQP 124

Query: 122 SNNR---AETGPIRVFS----DGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQ 172
           +      A+ G   V+     +  +  V  +  P  +P +E  +L +L A+  +   + Q
Sbjct: 125 AKQEIPVADKGKCVVYPGIEINLTNYSVTVDDLPVEMPPKELELLYFLAASPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   I+G +D   +   V+ HI +LR K+++
Sbjct: 185 LLDQIWG-YDYMGDTRTVDVHIKRLRAKIKD 214


>gi|323690863|ref|ZP_08105157.1| hypothetical protein HMPREF9475_00018 [Clostridium symbiosum
           WAL-14673]
 gi|323505082|gb|EGB20850.1| hypothetical protein HMPREF9475_00018 [Clostridium symbiosum
           WAL-14673]
          Length = 214

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 8/142 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           IR  + VP++ ++           F +G DD ++KP  + E L RV A+ RR     +R 
Sbjct: 72  IRKKTMVPILFLTARTQESDKAMGFSAGGDDYLSKPFSNAEFLMRVKALIRRYSQYGSRL 131

Query: 126 -AETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++GPI   S      D +   V G    L   E  ILE L  NR K  +   I+++I+
Sbjct: 132 SQKSGPILYVSNMVINTDEKSVSVDGVHIYLTSTEYDILELLARNRKKVFSMENIYNSIW 191

Query: 179 GLFDEAVEENVVESHISKLRKK 200
                   +N +  HI K  KK
Sbjct: 192 KDSYLGTSDNAIMVHIKKFEKK 213


>gi|325962147|ref|YP_004240053.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468234|gb|ADX71919.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 246

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 7/163 (4%)

Query: 43  REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           R DV  ++  + G  G +VL   RI     + P + ++   ++Q  +    +G DD V K
Sbjct: 65  RPDVLVLDVMIPGFDGVEVLG--RIRAFAPEFPALFLTAKDAVQDRIVGLAAGGDDYVTK 122

Query: 102 PIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           P    E+L R+  + +R  V+  + AE   G + +  D R+    GE   L   +  +L 
Sbjct: 123 PFSMEEVLLRLHRLVQRSGVAAMDTAELVVGDLVLNLDTREVARAGEALQLTATQFELLR 182

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           YLM N  + ++K QI   ++  +D   + N+VE +IS LRKK+
Sbjct: 183 YLMENPKRVISKAQILDRVWN-YDFGGQANIVELYISYLRKKV 224


>gi|294508521|ref|YP_003572580.1| response regulator DrrA [Salinibacter ruber M8]
 gi|294344850|emb|CBH25628.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 236

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 14/157 (8%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETG 129
           P++ I+     ++ L  F  G DD + KP +  E+ ARV AI +R     +   +  E G
Sbjct: 83  PVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQRTMPPAEAPMDVYEIG 142

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + V     +    G+       E  IL YL+ ++G+ V + Q+   ++G+ DE +    
Sbjct: 143 DVEVNFSTHEAYRNGDELNFTALEFDILRYLIQHKGRTVTRKQLLRDVWGI-DENIITRT 201

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
           ++ H++ +RKK+      DP D         +GY  D
Sbjct: 202 IDRHMASVRKKIEP----DPSDPTYIETVYGIGYRFD 234


>gi|260550399|ref|ZP_05824610.1| two-component system response regulator [Acinetobacter sp. RUH2624]
 gi|260406505|gb|EEW99986.1| two-component system response regulator [Acinetobacter sp. RUH2624]
          Length = 247

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR + +N  +
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAS 137

Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKIYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +       + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGILQMFINVRGVGYRLD 238


>gi|284037825|ref|YP_003387755.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817118|gb|ADB38956.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 223

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 82/152 (53%), Gaps = 7/152 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +L R IR+ ++ VP++ ++   S+    D F++G DD + KP   +E+L R+ A+ RR+
Sbjct: 60  FDLCRHIRSENEAVPVLMLTALDSMADKSDGFNAGADDYLAKPFEFQELLLRLRALTRRI 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  +   + +  D +     G+   L  RE  ++EY+M N+GK +++  I   ++
Sbjct: 120 GSRPKQVLQLADLELNLDSKTVTRAGKRIDLTTREYALVEYMMLNKGKVISRVDISERVW 179

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209
            L FD     NV++ ++S LRKK+    GF P
Sbjct: 180 SLNFDN--NSNVIDVYVSYLRKKIDK--GFSP 207


>gi|194364697|ref|YP_002027307.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347501|gb|ACF50624.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 227

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 6/153 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNRAETG 129
            P++ IS    +   +    +G DD + KP    E+ ARV  + RR   +   +N    G
Sbjct: 74  TPVLMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLIRRQGPTGAIDNVLRAG 133

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +    R     G+   L   E ++LE+L+ N G+ V ++ +F  ++G  FD     N
Sbjct: 134 DLELDLMTRSARRGGDEIALLPTEFKLLEFLVRNAGQVVTRSMLFQEVWGYHFDPGT--N 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +++ HI ++RK++       P+ + R  GY  D
Sbjct: 192 LIDVHIGRVRKRIEQPGRPQPIMTVRGTGYVFD 224


>gi|126651878|ref|ZP_01724079.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591346|gb|EAZ85454.1| two-component response regulator [Bacillus sp. B14905]
          Length = 256

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 32/239 (13%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLE----FEEWLQSSAREDVSAIEAFLIGKGE 58
           +L+DD + + D    +     ++ EGF  ++     +E L +  ++    I   ++    
Sbjct: 22  LLVDDESAILDMLQMV-----LTKEGFRQIDRASTAQEALNACNKKPYDMILLDVMLPDR 76

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              ++   IR  ++ P++ I+   S    L  F  G DD + KP +  EI+AR+ A  RR
Sbjct: 77  SGFDICPFIRETTEAPILFITAKNSDLEKLTGFAMGGDDYITKPFNPLEIVARMKAQLRR 136

Query: 119 LK---------VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           +K         +S+N    + G  +V     +  V G+V   P +  ++L +   +  + 
Sbjct: 137 VKLYEEERPLHLSSNMFIYDFGRFQVNERAGELMVDGQVISCPAQVYQLLLFFCKHPNQI 196

Query: 168 VAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSI 220
             K+Q++ A++G  D +  ++N V  HI ++R+++      DP D +     R LGY +
Sbjct: 197 FTKSQLYEAVWG--DHSFGDDNTVTVHIGRIRERIEK----DPKDPELLLTIRGLGYKL 249


>gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 226

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 12/155 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           Q P+I ++    +   +   +SG DD V KP    E+LARV A  RR+    N  E   +
Sbjct: 74  QTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQLRRV----NPEEPDRL 129

Query: 132 RVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           + F+D     +  EV+       L  +E  +LE+L+ +  + V + QI   ++G +D   
Sbjct: 130 Q-FADVSLHRLTHEVYRGSQRLELTAKEFDLLEFLLRHARQVVTRDQILEQVWG-YDFMG 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E N++E +I  LR KL        + + R +GY I
Sbjct: 188 ESNIIEVYIRALRLKLEASNPQRILQTVRGVGYVI 222


>gi|330821252|ref|YP_004350114.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
 gi|327373247|gb|AEA64602.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
          Length = 266

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%)

Query: 49  IEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
           ++  L G+G   L++ R +R  S +P+I ++        L   + G DD V KP   RE+
Sbjct: 57  LDLMLPGRGG--LDICRELRGFSTIPVIILTARVDEIDRLLGLELGADDYVCKPFSPREV 114

Query: 109 LARVAAIYRRLKVS--NNRAETGPIRVFSDGR------DPE-----VQGEVFPLPRRERR 155
           +ARV AI RR++ +    + E G     +DG       DPE     + G    L   E R
Sbjct: 115 VARVKAILRRIEQAERKGKGEAGHEANAADGGAAPFEIDPEHHVARLDGRNLHLTPVELR 174

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +L  L+AN G+  ++  +   +Y      V +  V+SH+  LR+KL+
Sbjct: 175 LLALLVANPGRIYSRDFLLRRLYDDH-RVVTDRTVDSHVKNLRRKLQ 220


>gi|303240383|ref|ZP_07326901.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592110|gb|EFL61840.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 239

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 72/145 (49%), Gaps = 5/145 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S VP+I ++        +   D G DD + KP    E++AR+ A+ RR+ 
Sbjct: 57  FEVCQEIRKTSNVPIIMVTAKGEDADRIMGLDIGADDYIVKPFSPGEVMARIRAVLRRID 116

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +S    +       + +     + ++ G+   L ++E  I   L +N GK  ++  + ++
Sbjct: 117 ISEEDKKDIIRFPGLEINISDYEVKINGQEVNLTKKEIEIFWLLASNPGKVFSRDNLLNS 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G ++   +   V++HI +LR K+
Sbjct: 177 VWG-YEYFGDARTVDTHIKRLRAKV 200


>gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 227

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
           +R  S +P+I ++        +  F+ G DD V KP   RE++ARV A+ RRL  K    
Sbjct: 69  VRKKSDIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLRRLGPKGPEQ 128

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E   + +  + R     G+   L  +E  +L +L  N+ K   + ++   ++G +D  
Sbjct: 129 TLEFPGLVIEPESRTVRADGKEVALTPKEFDLLYFLAKNKEKVFTREKLLEEVWG-YDFF 187

Query: 185 VEENVVESHISKLRKKL 201
                V++HI +LR+KL
Sbjct: 188 GSLRTVDTHIKQLREKL 204


>gi|295425531|ref|ZP_06818222.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064784|gb|EFG55701.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 265

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 98/213 (46%), Gaps = 16/213 (7%)

Query: 23  GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79
            ++ EGF+   + + EE +Q     D   +   L+   +  LE+ R +R    +P+I ++
Sbjct: 48  NLTKEGFDVDTAYDGEEAVQKVEEYDPDLMILDLMLPKKDGLEVAREVRQTHDMPIIMVT 107

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-----------SNNRAET 128
              +    +   + G DD V KP  +RE++ARV A  RR  +           ++   + 
Sbjct: 108 AKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDIVKKAEAATQEEADKNIKI 167

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +  D    E  G+   L  RE  +L YL  + G+ + +  +   ++G +D   +  
Sbjct: 168 GNLVIMPDAYIVENNGKKIELTHREFELLYYLAQHMGQVMTREHLLQTVWG-YDYFGDVR 226

Query: 189 VVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            V+  + +LR+K+  N +    + ++R +GY +
Sbjct: 227 TVDVTVHRLREKIEDNPIQPQILITRRGVGYYV 259


>gi|289549074|ref|YP_003474062.1| transcriptional regulator [Thermocrinis albus DSM 14484]
 gi|289182691|gb|ADC89935.1| two component transcriptional regulator, winged helix family
           [Thermocrinis albus DSM 14484]
          Length = 223

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 9/157 (5%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNR 125
           A   VP++ I+        L  F+ G DD + KP   RE+LAR+ A+ RR   LK S   
Sbjct: 73  ATKSVPIVFITVKGMEDDRLKGFELGADDYITKPFSLRELLARIRAVLRRSGHLK-SEGI 131

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G +++ +   +     E   L   E +ILE L+ N G+ V++  +  A+     + V
Sbjct: 132 YQLGELQIDTQKMEVRRGKEKIYLTPTEFKILECLLENYGRPVSREYLIEAV---LKKDV 188

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +  ++ H+  LR+KL  K G   + + R +GY I+ 
Sbjct: 189 YDRTIDVHVKNLREKL-GKEG-QAIRTVRGIGYKIEL 223


>gi|238895651|ref|YP_002920386.1| DNA-binding transcriptional regulator BaeR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330010883|ref|ZP_08306922.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
 gi|238547968|dbj|BAH64319.1| two-compoent regulatory system response regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328534358|gb|EGF60966.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
          Length = 240

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 6/153 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLKVSNNRA---ETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K   +        P+ +  +GR     + ++  L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRDLQALDAQSPL-IVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|229829750|ref|ZP_04455819.1| hypothetical protein GCWU000342_01847 [Shuttleworthia satelles DSM
           14600]
 gi|229791739|gb|EEP27853.1| hypothetical protein GCWU000342_01847 [Shuttleworthia satelles DSM
           14600]
          Length = 218

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 82/162 (50%), Gaps = 6/162 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           L++ + IR  S++P++ ++ +   +  ++ F S  D  + KP     + AR+ + I R  
Sbjct: 60  LDVLKEIRRKSRLPVLILTAFSDEEYKIEAFTSLADGYIEKPFSLPVLKARIDSLIERHF 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++  A  G    FS      V GE   +  +E  IL++L+ + G  + + QI   ++ 
Sbjct: 120 GLTDRFAYKGTEVNFS-SYSARVDGEKVDVNAKEVEILKFLLEHEGCALTRAQILDGVWK 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +E   + V++ +I    K+LR KLG D + + R +GY ++
Sbjct: 179 ETEEIPFDRVIDVYI----KELRKKLGLDCIITVRNVGYKLE 216


>gi|222097886|ref|YP_002531943.1| response regulator [Bacillus cereus Q1]
 gi|228987692|ref|ZP_04147803.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229158056|ref|ZP_04286126.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|221241944|gb|ACM14654.1| response regulator [Bacillus cereus Q1]
 gi|228625375|gb|EEK82132.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228771966|gb|EEM20421.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRNVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225


>gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
 gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
          Length = 233

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 76/152 (50%), Gaps = 3/152 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAET 128
           +++P++ ++        ++ FD G DD + KP   +E++AR+ AI RR K      + + 
Sbjct: 76  NEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAILRRKKPDFFPKQIKH 135

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G ++V  D  +   Q +   L   E ++L  L  N+ + +++  I   I+    E ++  
Sbjct: 136 GNLQVHPDSHEVFHQSKFIKLGPTEFKLLYLLCMNKNRVLSREIIVDKIWNNESE-IDAR 194

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ H+ +LR  L++    + +++ R  GY +
Sbjct: 195 TIDVHVKRLRSTLKSHGIENSIETIRGAGYKL 226


>gi|206578805|ref|YP_002237485.1| transcriptional regulatory protein BaeR [Klebsiella pneumoniae 342]
 gi|288934410|ref|YP_003438469.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290508614|ref|ZP_06547985.1| two-component system, OmpR family, response regulator BaeR
           [Klebsiella sp. 1_1_55]
 gi|206567863|gb|ACI09639.1| transcriptional regulatory protein BaeR [Klebsiella pneumoniae 342]
 gi|288889139|gb|ADC57457.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289778008|gb|EFD86005.1| two-component system, OmpR family, response regulator BaeR
           [Klebsiella sp. 1_1_55]
          Length = 240

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 6/153 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLKVSNNRA---ETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K   +        P+ +  +GR     + ++  L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRDLQALDAQSPL-IVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|170768541|ref|ZP_02902994.1| transcriptional regulatory protein CreB [Escherichia albertii
           TW07627]
 gi|170122645|gb|EDS91576.1| transcriptional regulatory protein CreB [Escherichia albertii
           TW07627]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G S++ F   E    +   AR+    +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFSVDVF---ERGLPVLDKARQQAPDVIILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLAIHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +       I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+   +
Sbjct: 125 FSTPPPVLRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDCV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPELSPINTHRGMGYSL 226


>gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 226

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++  
Sbjct: 61  LEVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V+  + E     G + +               L  RE  +L+ LM N+   + ++ +   
Sbjct: 121 VTVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 181 VCG-YDYLGETNVIDVYIRFLRTKIDDAFKAKIITTVRGVGYVI 223


>gi|83816384|ref|YP_446589.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|83757778|gb|ABC45891.1| response regulator DrrA [Salinibacter ruber DSM 13855]
          Length = 226

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 14/157 (8%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETG 129
           P++ I+     ++ L  F  G DD + KP +  E+ ARV AI +R     +   +  E G
Sbjct: 73  PVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQRTMPPAEAPMDVYEIG 132

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + V     +    G+       E  IL YL+ ++G+ V + Q+   ++G+ DE +    
Sbjct: 133 DVEVNFSTHEAYRNGDELNFTALEFDILRYLIQHKGRTVTRKQLLRDVWGI-DENIITRT 191

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
           ++ H++ +RKK+      DP D         +GY  D
Sbjct: 192 IDRHMASVRKKIEP----DPSDPTYIETVYGIGYRFD 224


>gi|78065828|ref|YP_368597.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77966573|gb|ABB07953.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 252

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IRA S++PLI ++    +   +   + G DD + KP   RE++AR+  I RR++
Sbjct: 80  LNLCREIRATSEIPLIILTARGEMTDRIVGLELGADDYIVKPFEPRELVARIQTILRRVR 139

Query: 121 VSN---NRAET----GPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  RA+        R+   GR        V PL   E R+L   +A  G+ +++  
Sbjct: 140 AQTQGRTRAQEESRFAGWRLHQIGRHLIAADNTVIPLSNAEFRLLNAFLAAPGRVLSREY 199

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           +     G   +  + + ++  IS+LR+KLR  +  +P  + + R  GY +D
Sbjct: 200 LMDTARGKSIDTFDRS-IDVQISRLRQKLREDIK-EPRLIRTIRGEGYMLD 248


>gi|27382730|ref|NP_774259.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355902|dbj|BAC52884.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 66/148 (44%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R IR  S VP++ +S        +   + G DD V KP   RE++ARV  I RRL 
Sbjct: 62  LDVCREIRKGSDVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILRRLS 121

Query: 121 VSNNRAETGPIRVFSDGR--DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N  A+ GP  +   G   DPE       G    L   E  IL   +        + Q+
Sbjct: 122 PRNGEAKAGPSALAQGGLLIDPEQHVASFAGTPLKLTAIEFGILRAFLTRPTSVFNREQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
             A Y L +  V +  ++SHI  +R KL
Sbjct: 182 MRAAYQL-NIQVSDRTIDSHIRNIRAKL 208


>gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 243

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 24/215 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L  +GY   +  DG   EG   LE   W          A+   L+  G   LE+ +  RA
Sbjct: 24  LRDEGYAVEYAADGN--EGMRRLEEGGW---------DALVLDLMLPGIDGLEICKRARA 72

Query: 70  HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126
            ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR +    N R 
Sbjct: 73  MTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRTEALERNARI 132

Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + G +R      DP      V      L  RE  +L +   N  K  ++  + + ++G  
Sbjct: 133 DAGSLRQHGVAIDPIARTASVDERRLELTPREFDLLHFFARNPDKVFSRLDLLNQVWGYQ 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            E   E+ V +HI++LR K+      DP + +R L
Sbjct: 193 HEGY-EHTVNTHINRLRTKIEA----DPSNPQRIL 222


>gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F       E F + + EE L+     +   I   L+      L
Sbjct: 4   ILVVDDEKPISD--IVKFNLSKEGYEVFTAYDGEEALEKVREVEPDLILLDLMLPKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKTFDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSS 121

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   AE         G + +  D        E   L  RE  +L YL  + G+ + +  +
Sbjct: 122 AAKEAEEQTNSELSIGDLTIHPDAYMVTKHNEAIELTHREFELLHYLAKHIGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+  N    + + ++R +GY +
Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLATRRGVGYYL 228


>gi|310640765|ref|YP_003945523.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309245715|gb|ADO55282.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 90/233 (38%), Gaps = 38/233 (16%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           +AL K+GY      DG   EG N+ E         R     +   L+      +E+ R I
Sbjct: 20  KALTKEGYNLTTASDGE--EGLNAFE---------RHTYDLVLVDLMMPKVDGMEVIRQI 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------- 118
           R  S VP++ +S   S          G DD V KP    E+ AR+ +  RR         
Sbjct: 69  RTRSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTTYARLQQ 128

Query: 119 ---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                    L   N R +     V  DG   E+Q     L  +E  IL+   +N  +   
Sbjct: 129 QEEQPQAQVLTYGNLRIDFDHFTVIRDGN--EIQ-----LTAKESDILKLFASNPNRVFT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           K Q++  I+   D   +ENV+  HI +LR+K+       PV  K   G    W
Sbjct: 182 KAQLYGFIWK-DDYMGDENVINVHIRRLREKIEEDPSH-PVHIKTLWGIGYKW 232


>gi|149927072|ref|ZP_01915330.1| phosphate regulon transcriptional regulatory protein [Limnobacter
           sp. MED105]
 gi|149824293|gb|EDM83513.1| phosphate regulon transcriptional regulatory protein [Limnobacter
           sp. MED105]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+  ++    +R H     VP+I ++     Q  +D  ++G DD + KP   +E+LAR+ 
Sbjct: 58  GKTGIQFAHELRGHERTRHVPVIMLTARTEEQDKVDGLEAGADDYITKPFSPKELLARIK 117

Query: 114 AIYRRL--KVSNNRAETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR   +++++  E   +++  D     + G  ++  +   E R+L + M +  +  +
Sbjct: 118 AVLRRRAPQLTDDIVEVHGLKL--DPVTHRIMGHDKIIDMGPTEFRLLHFFMTHPERVHS 175

Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           +TQ+   ++G  D   VEE  V+ HI +LR+ L
Sbjct: 176 RTQLLDQVWG--DHVFVEERTVDVHIRRLRQAL 206


>gi|58583465|ref|YP_202481.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428059|gb|AAW77096.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 260

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 31/195 (15%)

Query: 51  AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           A L G+G +++            E+ R IR  S VP+I ++        +   D+G +D 
Sbjct: 70  ALLAGQGAELVVLDIGLPDRDGHEMLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDY 129

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150
           V KP   +E++AR+  + R+    +   E+    VF DG        R+  + GE  PL 
Sbjct: 130 VTKPFGVQELMARIRVLLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLNGEAVPLS 185

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG---- 206
           R+E  +L  L+ + G+ V + Q+   ++G   E  + + +   + KLR+KL++       
Sbjct: 186 RKEYALLALLLKHAGRVVTQPQLLRELWGPTHEE-DTHYLRILVGKLRQKLQDDAAAPHY 244

Query: 207 --FDPVDSKRFLGYS 219
              +P    RF+G +
Sbjct: 245 IVTEPGVGLRFIGVT 259


>gi|84393037|ref|ZP_00991803.1| transcriptional regulator CpxR [Vibrio splendidus 12B01]
 gi|84376289|gb|EAP93171.1| transcriptional regulator CpxR [Vibrio splendidus 12B01]
          Length = 214

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 15/118 (12%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL------KVSNNRAETGPIRVFSDGRDPEVQGEVF 147
           G DD + KP   RE+LAR+ AI RR       K +++  +   I VF   ++    G++ 
Sbjct: 78  GADDYLPKPFSDRELLARIRAILRRTQTNTAPKSASDTIQYQDIEVFPGKQEAYCNGQII 137

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
            L   E  +L +L+ N G+ + K  +   + G     FD A     ++ HIS LRKK+
Sbjct: 138 DLTTTEFALLSHLIQNPGQVITKEALSLDVLGKRLAAFDRA-----IDMHISNLRKKI 190


>gi|297579645|ref|ZP_06941572.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535291|gb|EFH74125.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 12/167 (7%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + IRA  +QV ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR 
Sbjct: 60  LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQI 173
              N +  T     F+D         V+       L  +E  ILE  +   G   ++ +I
Sbjct: 119 ---NIQTHTSNKLRFADLELCLSTMRVYRAEQPIGLTAKEISILELFLRKPGHIFSRERI 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 176 LANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|303240453|ref|ZP_07326970.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592018|gb|EFL61749.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 20/168 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR  +    A
Sbjct: 69  IREELNIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELMARVKSQMRRYTLLGGAA 128

Query: 127 E------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
           E       G + + ++ ++  + GE+  L   E  I+ +LM N G+  +  QI+  ++  
Sbjct: 129 EKSGVIKNGGLELDTEAKEVRLDGELVKLTATEYGIVLFLMNNIGRVFSIEQIYENVWNE 188

Query: 180 -LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
            L+     E+ V  HI ++R+K+      +P D K       +GY I+
Sbjct: 189 PLYS---SESTVAVHIRRIREKME----INPKDPKYLKVVWGIGYKIE 229


>gi|300704596|ref|YP_003746199.1| two-component system response, response regulator receiver,
           transcriptional regulatory protein [Ralstonia
           solanacearum CFBP2957]
 gi|299072260|emb|CBJ43593.1| putative two-component system response, response regulator
           receiver, transcriptional regulatory protein [Ralstonia
           solanacearum CFBP2957]
          Length = 237

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFP 148
           +G DD V KP+   E++ARV A+ RR       S  R   GP  V   GR   + G    
Sbjct: 96  AGADDYVVKPVRRAELVARVGALLRRAAPRTGESLERMRVGPYGVDPLGRVLTLHGSQVE 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L  RE  +  YL  N GK V +  I  A++G      +   + +HISKLR KL
Sbjct: 156 LSPREFDLALYLFRNVGKLVPRELIEQAVWG-RSIGPDSRTLATHISKLRLKL 207


>gi|283471843|emb|CAQ51054.1| response regulator protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 221

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I IS        +     G DD + KP +    +A++ A+ RR   L V+N
Sbjct: 66  IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +        +  D      Q +   L   E +IL+ L  N  K V++T      +   + 
Sbjct: 126 DSMTVKGCTLILDEAKVVYQEQNIQLSLTELQILKLLFQNEDKYVSRTASIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +++N +  ++++LRKKL N +G  D + +K+ +GY +
Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221


>gi|262369887|ref|ZP_06063214.1| response regulator [Acinetobacter johnsonii SH046]
 gi|262374252|ref|ZP_06067528.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262310810|gb|EEY91898.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262314926|gb|EEY95966.1| response regulator [Acinetobacter johnsonii SH046]
          Length = 237

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 14/145 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I +S   + +  +   D+G +D V KP   +E++AR+  + R+     ++ 
Sbjct: 77  LRTWSHVPVIVLSVRANEEEKVKLLDAGANDYVTKPFSVQELVARIRVLLRQ-----HQH 131

Query: 127 ETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            T    +F DG        R   +  ++  L R+E ++L  L  N+G+ + + QI   ++
Sbjct: 132 STVDTVIFDDGVLKIDFSKRQVFLNQQLLSLTRKEYQLLNLLAKNKGQLITQPQILKELW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
           G   +  + + +   ++KLR KL +
Sbjct: 192 GPTHQE-DTHYLRILVAKLRVKLND 215


>gi|225375459|ref|ZP_03752680.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
 gi|225212656|gb|EEG95010.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 17/146 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P++  +      + +    +G DD + KP    E++AR+A++ RR    N +A
Sbjct: 67  IRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 126

Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             G I+  +        + R        F LP +E  +L Y   ++GK + K QI+  ++
Sbjct: 127 --GAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 184

Query: 179 G---LFDEAVEENVVESHISKLRKKL 201
           G    +D++   N++ + IS+LRKKL
Sbjct: 185 GEEYFYDDS---NIM-AIISRLRKKL 206


>gi|254507033|ref|ZP_05119171.1| DNA-binding response regulator [Vibrio parahaemolyticus 16]
 gi|219550028|gb|EED27015.1| DNA-binding response regulator [Vibrio parahaemolyticus 16]
          Length = 219

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 28/220 (12%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRII 67
           AL ++G+      DG+           + L  +  ED  AI   L + K + +  L  I 
Sbjct: 19  ALEQNGWTPELSTDGI-----------DALYRATSEDWEAIVLDLGLPKLDGLTVLKSIR 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
             +   P+I +S   +L   ++  ++G DD   KP    E++AR+ A  RR   S N + 
Sbjct: 68  DENINTPIIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRR--ASGNASP 125

Query: 127 --ETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
             + G + +  D R  +V  QG+   L   E +++ Y M +  K +++T++   IY   F
Sbjct: 126 VIQNGNLSL--DTRTSKVMWQGQAISLTALEFKVVAYFMHHPEKVISRTELVEHIYKQDF 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + N +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 184 DR--DSNTIEVFIGRIRKKIAPKV----IKTVRGLGYQLN 217


>gi|219848756|ref|YP_002463189.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543015|gb|ACL24753.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 227

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 9/153 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  +  P++ ++   + +  +   D G DD + KP ++ E+LAR+  + RR+  S NR 
Sbjct: 70  VREFASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRRVP-SVNRP 128

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            T   G I +    R+  V+G +  L   E ++L  L    G  V   Q+  A++G    
Sbjct: 129 LTVGNGLITINPRQREVRVRGTIIDLTPTEYQLLMVLAEQAGAVVTHEQLLRAVWG---- 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
             E N    ++      LR K+ FDP   +  L
Sbjct: 185 -NEPNRDNDYLKVYIWHLRRKIEFDPRQPQLLL 216


>gi|332652719|ref|ZP_08418464.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
 gi|332517865|gb|EGJ47468.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
          Length = 236

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 10/185 (5%)

Query: 19  FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIG 77
           F  DGVS  G ++LE+ +    +   D   ++  + G  G +VL+  R  R   + P + 
Sbjct: 37  FSVDGVS-NGEDALEYGQ----TGEYDGLILDIMMPGLDGLQVLQTLR--RNGIKTPALF 89

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSD 136
           ++    +   ++  D+G DD + KP    E+LAR+ A+ RR      +    G + +   
Sbjct: 90  LTARTEISQRVEGLDAGADDYLPKPFSTAELLARIRAMLRRKDTYLPDLLAIGSVILNRS 149

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
                 Q ++  L  +E +ILE +M   G  +   +  + ++G +D  V+ +VV  HIS 
Sbjct: 150 TYQLVFQEKIQTLSGKEFQILEMMMQAPGTIIPTDRFITHLWG-WDTNVDTSVVWVHISN 208

Query: 197 LRKKL 201
           LRKK+
Sbjct: 209 LRKKI 213


>gi|330889421|gb|EGH22082.1| DNA-binding response regulator RstA [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 95/196 (48%), Gaps = 15/196 (7%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           VS+EG  +L     +  + + D+  ++  L   GE    + R +R     P++ ++    
Sbjct: 32  VSIEGNGALAAARII--AEQPDLVILDLML--PGEDGFSICRSVRDRYDGPILMLTARTD 87

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRVFSDG 137
               +   D+G DD V KP+H R +LAR+ A+ RR +     A        GP+   +  
Sbjct: 88  DTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRGLVFGPLVGDNAL 147

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R+  ++ +   L   E  +L   +AN G+ +++ +IF+A+ G+  +  ++  ++  IS++
Sbjct: 148 REAWLREQSIELTGAEFDLLWLRVANAGRTLSREEIFTALRGVGYDG-QDRSIDVRISRI 206

Query: 198 RKKLRNKLGFDPVDSK 213
           R     K+G DP+  +
Sbjct: 207 RP----KIGDDPIHPR 218


>gi|319940840|ref|ZP_08015179.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
 gi|319805722|gb|EFW02503.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
          Length = 233

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 16/210 (7%)

Query: 22  DGVSLEGFNSLEFE---EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78
           D  +LEGF+++      E L   ARE    +   ++  G   +E+ + +R  S +P++ +
Sbjct: 23  DYFTLEGFDTVPAHNGPEGLAHLAREPFDLVVLDVMMPGMSGVEVLKKMREKSHIPVLML 82

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIRVFS 135
           +        +   + G DD V KP   RE++AR+ AI RR   +   A     GP+ +  
Sbjct: 83  TARGDPVDRIVGLELGADDYVQKPCPPRELVARINAILRRSATAWAAAAPVIVGPVTIDP 142

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI----YGLFDEAVEENVVE 191
             R          L   E  + E L  + G  V K +I+  +     G +D A     ++
Sbjct: 143 AQRSVNSAAGPIALTGTEFSLFELLARHAGTPVPKEEIYPKVLGRPMGPYDRA-----ID 197

Query: 192 SHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            H+S +R K+   +G    ++S R +GY +
Sbjct: 198 VHVSAIRHKVSAVIGKKIAIESIRGVGYQL 227


>gi|291562260|emb|CBL41076.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 20/203 (9%)

Query: 10  LVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY +  FGD    L+ F         Q  A  D+  ++  + G     L +   IR
Sbjct: 22  LEKEGYEVECFGDGESLLDAF---------QKKA-PDLCILDIMMPGMDG--LTVCTQIR 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV------- 121
             S VP+I +S   S    +     G DD + KP    E++ RV A++RR+         
Sbjct: 70  KTSHVPIIIVSAKDSPLDRITGITLGSDDYMVKPFLPLELVTRVKALFRRVDTFSGQEEE 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  E G I+++   R  +++ E F L   E   L +++  +    ++  +  +++ + 
Sbjct: 130 AKDSYEIGDIKLYPKRRAAKLKDEDFALTPLEFDFLCHMLERQEHAASRDDLLKSLWKVD 189

Query: 182 DEAVEENVVESHISKLRKKLRNK 204
              V+   V+  + +LRKKL+++
Sbjct: 190 SREVDTRAVDDMVKRLRKKLKDQ 212


>gi|256544758|ref|ZP_05472130.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
 gi|256399647|gb|EEU13252.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
 gi|325478285|gb|EGC81401.1| response regulator receiver domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 232

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 17/155 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VLE+   IR    +P++ ++      + +     G DD + KP +  E+ ARV A+ 
Sbjct: 61  GFQVLEM---IREECTIPVLMLTAKSDDDSKIYGLKQGADDYLTKPFNINELKARVEAMV 117

Query: 117 RRLKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR    N ++           +++  + R  ++      L  +E  +L +L +N+G+   
Sbjct: 118 RRYIDFNQKSTDQSDILTIDGMQIDKENRIVKISDNNIELTNKEFDLLYFLASNKGRIFT 177

Query: 170 KTQIFSAIYG---LFDEAVEENVVESHISKLRKKL 201
           K QI++ ++    LFD++   N++ S ISKLRKK+
Sbjct: 178 KKQIYTNVWEEDYLFDDS---NIM-SFISKLRKKI 208


>gi|271964907|ref|YP_003339103.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508082|gb|ACZ86360.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 11/153 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP++ +S         D  D G DD + KP  +  ++AR+ A+ RR   +N R     +R
Sbjct: 73  VPILMLSAKDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRR--GANRRPSV--LR 128

Query: 133 VFSDGRDPE----VQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
                 DP      +GE    L  RE  +LEYLM    + V+KT+I   ++  FD   + 
Sbjct: 129 AGDLSLDPARRRVSRGETPVELTPREFALLEYLMRRHDEVVSKTEILEHVWDTFD--TDP 186

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           NVVE ++  LR+K+        + + R  GY +
Sbjct: 187 NVVEVYVGYLRRKIDVPFSRTALQTVRGAGYRL 219


>gi|196047031|ref|ZP_03114250.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022135|gb|EDX60823.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 225

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 68  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 128 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 187 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 222


>gi|332307902|ref|YP_004435753.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175231|gb|AEE24485.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 232

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 9/167 (5%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           + DV  ++  L   GE    L + IR H Q PL+ ++   +    +   + G DD + KP
Sbjct: 45  KPDVLVLDVML--PGENGFTLCKKIRPHYQGPLLFMTAKDNDFDHVLGLEIGADDYIVKP 102

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRI 156
           +  R +LAR+ A+ RR  +  +++E      F         R   + G+  PL   E  +
Sbjct: 103 VEPRVLLARIQALLRRSALPQSQSEQAKQLCFGQLQLDYLARKVVLHGQDVPLTSHEFDM 162

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           L  L +N  + V +  ++  + G   + ++ +  +  IS+LRKKL++
Sbjct: 163 LWKLASNASQLVDRNTLYRELIGREYDGLDRS-ADVRISRLRKKLKD 208


>gi|325288450|ref|YP_004264631.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324963851|gb|ADY54630.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 223

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 28/162 (17%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129
           + +I ++   S+Q  +   DSG DD + KP    E+LAR+ A+ RR   + + N +   G
Sbjct: 73  IAIILLTAKDSVQDRVIGLDSGADDYLVKPFASEELLARIRALSRRKSNVLLPNEKLSLG 132

Query: 130 PIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            I VF    DP +QGE+        L  +E  +L+ L+ + G+ + K QI   ++GL D 
Sbjct: 133 DI-VF----DP-LQGEIICGEEKIKLTLKESLLLDLLLRHAGQVLTKEQILDRVWGL-DS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSI 220
            VE   VE +I  LR+K+       P DS R      +GYS+
Sbjct: 186 EVETGTVELYIHYLRRKI-------PSDSIRIETIRGIGYSL 220


>gi|319654386|ref|ZP_08008473.1| hypothetical protein HMPREF1013_05093 [Bacillus sp. 2_A_57_CT2]
 gi|317393885|gb|EFV74636.1| hypothetical protein HMPREF1013_05093 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 6/162 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P++ +S     +  L+ F  G DD + KP +  E+LARV A+ RR      
Sbjct: 65  RELRNTSNIPILILSSKKERKDILNGFKHGADDYITKPFNDGELLARVEALLRRTSAHKQ 124

Query: 125 RAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              +    ++ + G D     +  PL  +E  +L  L+ N     ++  +   I+   + 
Sbjct: 125 IGLSIQGLIWDERGFDLTYNEKSIPLTPKEFALLGTLIKNPNHVFSREVLLKIIWE-NNG 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSIDWN 223
             E   ++SHI  +R+KLR   G+ PVD       G    WN
Sbjct: 184 QTENRTIDSHIRNIREKLRQS-GY-PVDLYLNTVWGTGYQWN 223


>gi|319794193|ref|YP_004155833.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315596656|gb|ADU37722.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 14/199 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           RAL + G++A    D  + E F          +    D   ++  L  K G  VL   R 
Sbjct: 18  RALTQSGFVADHAPDARTAEAF---------MAGTEYDAIVLDLRLPDKHGLSVLADMR- 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-R 125
             A  + P++ ++   +LQ  +   + G DD + KP    E+ AR+AA+ RR +   + R
Sbjct: 68  -DADDRTPVLILTAQGALQDRVRGLNLGADDFLTKPFELVELEARLAALVRRSRGKQHPR 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            +   +   S+     ++G +  L  RE+  L  L+   G  V K+Q+F+ ++   D   
Sbjct: 127 LQCASLSYDSESHAFTLRGTLLSLTPREQAALTALLMRSGAPVGKSQLFAKVF-TNDSTA 185

Query: 186 EENVVESHISKLRKKLRNK 204
             + +E  + +LR+KL + 
Sbjct: 186 GPDAIEVVLHRLRRKLADS 204


>gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 223

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + R +R+  + VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LTVLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR- 118

Query: 120 KVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             S+N+ +T  +   +     R     G    L  RE  +LE L+ ++G  +++TQ+ + 
Sbjct: 119 -NSDNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++    E    N+V+ +I  LRKK+ +      + + R  GY++
Sbjct: 178 VWDFGFEG-GSNIVDVYIRYLRKKIDDPFEKKLIHTVRGAGYTL 220


>gi|262163484|ref|ZP_06031230.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262028051|gb|EEY46710.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L L + IRA  +QV ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR 
Sbjct: 60  LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   L+ ++       +RV+   +  E       L  +E  ILE  +   G   ++
Sbjct: 120 IQTHTSNKLRFADLELCLSTMRVYRAEQPIE-------LTAKEISILELFLRKPGHIFSR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ + ++G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 173 ERVLANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|256371502|ref|YP_003109326.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008086|gb|ACU53653.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 236

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 12/137 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD-GRDPE----VQGE 145
            D+G DDV+ KP     ++AR+ A+ RR     N     PI    D   DP      +G 
Sbjct: 91  LDTGADDVLKKPFSFTVLVARIRALLRR-----NVESHPPILQAGDLTLDPASHRVTRGN 145

Query: 146 V-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           V   L  RE   LE L+ N+G  + K  I + ++  +D   + N+VE +I  LRKK+   
Sbjct: 146 VTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD-YDFEGDSNIVEVYIGYLRKKIDVP 204

Query: 205 LGFDPVDSKRFLGYSID 221
            G   + + R +GY ++
Sbjct: 205 FGTKAITTIRGVGYRLE 221


>gi|229141178|ref|ZP_04269717.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228642219|gb|EEK98511.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 237

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 67  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 126

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E QG+   L + E  +LE LM    + V + ++  A  
Sbjct: 127 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQADQYVTREELLEA-- 184

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++
Sbjct: 185 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 227


>gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
 gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
          Length = 237

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN   +      F     D +   V   G+   L  +E  +L++  +N  +   KTQ
Sbjct: 123 VLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D  +E +N V  HI KLRKK+
Sbjct: 183 IFRNVWD--DNYIEDDNTVMVHIRKLRKKI 210


>gi|254518244|ref|ZP_05130300.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911993|gb|EEH97194.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 32/226 (14%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+ +GY  +   DG+           E L+   +E +  I   ++      +     IR 
Sbjct: 27  LINEGYNIVLASDGI-----------EALEKLKKEKIDLIILDIMMPKLDGIRTCIKIRE 75

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
             ++P+I +S        +   + G DD + KP +  E++ARV +  RR+   +   E  
Sbjct: 76  DKKMPIIMLSAKSEDSDKILGLNIGADDYIIKPFNPLELVARVKSQLRRVTSFSEAKEIN 135

Query: 130 PIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--L 180
              ++ DG       R+  V+     L  RE  ILE L  NRG+ ++  QI+  ++    
Sbjct: 136 DEEIYIDGLRINKANREVLVEDRNIKLTPREFDILEVLAINRGRVLSTEQIYEKVWNEPF 195

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
           ++    EN V  HI    + +R K+  +P D K       +GY I+
Sbjct: 196 YN---SENTVAVHI----RNIREKIEINPKDPKYIKLVWGVGYKIE 234


>gi|255656273|ref|ZP_05401682.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|296450286|ref|ZP_06892046.1| response regulator [Clostridium difficile NAP08]
 gi|296878699|ref|ZP_06902703.1| response regulator [Clostridium difficile NAP07]
 gi|296260847|gb|EFH07682.1| response regulator [Clostridium difficile NAP08]
 gi|296430273|gb|EFH16116.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I IS        +   + G DD + KP +  E++ARV +  RR     N  
Sbjct: 67  IREERNIPIILISAKSEDTDKIMGLNIGADDYITKPFNLLELIARVKSNLRRYVTLGNYE 126

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +T       G + + +  ++ ++ GE   +   E +I+E L+ N+G+  +  +I+  ++ 
Sbjct: 127 DTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIYEKVWN 186

Query: 180 LFDEAVE-ENVVESHISKLRKKL 201
             +E+   EN V  HI ++R+K+
Sbjct: 187 --EESFNSENTVAVHIRRIREKI 207


>gi|225848484|ref|YP_002728647.1| transcriptional activator protein CopR [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643352|gb|ACN98402.1| transcriptional activator protein CopR [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ +S    ++  +     G DD + KP    E++AR+ A+ RR K     ++    
Sbjct: 72  KTPILVLSAKGEIEDKVKGLQLGADDYLTKPFSFPELIARINALIRRTKTIEEISKLKYA 131

Query: 132 RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +  D    EV   G+   L  +E  +L+YL+ N  + + +  I   ++ + D  ++ NV
Sbjct: 132 DLTIDLLKKEVYRNGKKINLTAKEFELLKYLVENSERIITRNMILENVFDI-DFDIDSNV 190

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+ HI +LR+K+  +     + + R  GY
Sbjct: 191 VDVHIHRLREKIDKRFEKKLIHTVRGFGY 219


>gi|254386477|ref|ZP_05001780.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345325|gb|EDX26291.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 235

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 34/229 (14%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL +DG++     DG+S LE F +           R D++ ++  +   G   + L R I
Sbjct: 22  ALERDGFVVTAMPDGLSGLESFRA----------DRPDIALLDVMV--PGMDGVSLCRRI 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +     
Sbjct: 70  RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRRFGHAGGPNG 129

Query: 128 T----------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + V ++G +    G    L   E R+L    +  G  +++ 
Sbjct: 130 GGGADDDADGERGVLTFGELEVDTEGMEVRKAGAPVALTPTEMRLLLEFSSAPGTVLSRD 189

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   ++  +D   +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 190 RLLERVWD-YDWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 233


>gi|148284743|ref|YP_001248833.1| CzcR-like response regulator [Orientia tsutsugamushi str. Boryong]
 gi|146740182|emb|CAM80430.1| CzcR-like response regulator [Orientia tsutsugamushi str. Boryong]
          Length = 245

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 24/203 (11%)

Query: 9   ALVKDGYIA---LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +L  +G IA     G DG+ +      ++   +      D+S  E  L  + +K+     
Sbjct: 19  SLANEGIIADKAHLGKDGIEISKL--YDYSLIILDLMLPDISGYEVLLSLRSQKI----- 71

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNN 124
                 Q P++ +S   ++   +     G DD + KP    E+ ARV AI RR K  S  
Sbjct: 72  ------QTPVLILSGLSTIDNKIKGLSFGADDYITKPFDSDELSARVKAIIRRSKGHSEA 125

Query: 125 RAETGPIRVFSDGR-----DPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               G + +  D R     + + Q  +   L  +E +ILE L   +G  + K    S +Y
Sbjct: 126 VIRVGHLSINLDTRSVSMYNKDKQKNIPIHLTNKEYKILELLAIKKGTVLTKEMFLSHLY 185

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
              DE  E  +++  I KLR+KL
Sbjct: 186 SGIDEP-EIKIIDVFICKLRRKL 207


>gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2]
 gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2]
 gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7]
          Length = 236

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + +P++ ++        +     G DD + KP    E++ARV ++ RR  
Sbjct: 63  IEVCRRLRNKTNIPILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRRFL 122

Query: 121 VSNNRAET---GPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +  +  E+     I+      D +     + GE  PL  +E  +L++L A+  +   KTQ
Sbjct: 123 ILGSDGESLEKTSIKYKDLTIDLKKYIIVIGGEEVPLTAKEFELLKFLAAHNEQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +F  ++   D   ++N V  HI KLRKK+
Sbjct: 183 LFRNVWE-SDYIEDDNTVMVHIRKLRKKI 210


>gi|28211098|ref|NP_782042.1| transcriptional regulatory component of sensory transduction system
           [Clostridium tetani E88]
 gi|28203538|gb|AAO35979.1| transcriptional regulatory component of sensory transduction system
           [Clostridium tetani E88]
          Length = 230

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 8/162 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I ++        +   D G DD + KP   +E+++R+ AI RR K  +   
Sbjct: 67  IRKASEVPVIFLTACDEEANVVIGLDIGADDYITKPFRIKELISRIRAILRRSKTFSKDL 126

Query: 127 E---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +   +G I+V +     E   +   L   E R+L   + +  + +++  I   ++    E
Sbjct: 127 DLLISGDIKVQTLQGKIEKNDKEIILTALEYRLLLIFINHPKQILSRNIILEELWDAEGE 186

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
            V++N +  +I +LR+K+ +  G +P  + + R LGY   WN
Sbjct: 187 FVDDNTLSVYIRRLREKIEDNAG-EPKYITTHRGLGYR--WN 225


>gi|93007040|ref|YP_581477.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394718|gb|ABE75993.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 74/153 (48%), Gaps = 9/153 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +++P+I ++      + +   D+G DD + KP   RE+++R+ A+ RR   SN  +   P
Sbjct: 77  AEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLRR---SNALSGDKP 133

Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           I +     D + Q      ++  +   E R+L + M++  +   + Q+   ++G  +  +
Sbjct: 134 INIGRLTLDAKSQRFMVGDDIIDMGPTEYRLLAFFMSHPERAYTRAQLLDQVWG-GNVYI 192

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E+  ++ H+ +LR  LR       + + R  GY
Sbjct: 193 EDRTIDVHVKRLRTLLRPHDCDTLIQTVRGTGY 225


>gi|330959033|gb|EGH59293.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 267

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 89  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 148

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 149 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 206

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+ +A  G   EA + +     I  L  +LR KLG DP
Sbjct: 207 RVLSREQLLNAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 245


>gi|322804927|emb|CBZ02486.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 227

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E   EL R I     +P+I ++    +   +   + G DD + KP + +E+L RV    R
Sbjct: 59  ESGFELCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIR 118

Query: 118 RLKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R+     +++         ++V  +GR      E   L  +E  +LE+ + NR    ++ 
Sbjct: 119 RVNKYKEKSDEEFIYINKFVKVNLEGRIVFKDDEEVKLKPQEYELLEFFVKNRNIVFSRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + + ++G FD   E   V+ H+ +LR KL  +     +D+   +GY
Sbjct: 179 ILLNKVWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTAFGIGY 224


>gi|296331985|ref|ZP_06874449.1| two-component response regulator controlling resistance to
           antibiotics affecting the envelope (YtsB) [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|296150756|gb|EFG91641.1| two-component response regulator controlling resistance to
           antibiotics affecting the envelope (YtsB) [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
          Length = 242

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 15/146 (10%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R+IR+ S VP++ +S  D+P+    +     G DD + KP H   ++A++ AI+RR  V 
Sbjct: 76  RLIRSRSNVPILFLSSRDHPA--DMVMSMQLGADDFIQKPFHFDVLIAKIQAIFRR--VH 131

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   E   I+ +        Q  V        L + E  IL+ L+  + K V++ ++  +
Sbjct: 132 HYNTEPSTIKTWCGAAIDAEQNLVSNDEGSVELTKNEMFILKQLIEQKNKIVSREELIRS 191

Query: 177 IYGLFDEA-VEENVVESHISKLRKKL 201
           ++   DE  V +N +  ++++LRKKL
Sbjct: 192 LWN--DERFVSDNTLTVNVNRLRKKL 215


>gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 236

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 33/227 (14%)

Query: 2   FVLIDDRALVKDG----------YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA 51
            +L++D   ++D           ++   GD   +LE F+   F          D+  ++ 
Sbjct: 8   ILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHF----------DLVILDL 57

Query: 52  FLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
            L    GE+V    R IR +S VP+I ++    ++  +   + G DD + KP   RE++A
Sbjct: 58  MLPRVPGERVC---RAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVA 114

Query: 111 RVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           R  A+ RR+   +       E G + +   G    V GE   L   E ++L  L    G+
Sbjct: 115 RARALLRRVHADSEPQREVLEFGELTIDVSGHKVLVNGEEIDLTASEFKLLTTLSRYPGR 174

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             ++ ++   + G +D    E  ++SH+    K LR K+G +P   K
Sbjct: 175 VYSRMELVEKVLG-YDFEGYERTIDSHV----KNLRAKIGDNPRSPK 216


>gi|229550855|ref|ZP_04439580.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315805|gb|EEN81778.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 269

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 102 MDVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 161

Query: 121 --VSNNRA---ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
             V+N+     E GP+ +  D  +   + G+   L   E  IL YL+A+   RV +  +I
Sbjct: 162 NEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGIL-YLLASHPNRVFSADEI 220

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 221 FERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 268


>gi|238855538|ref|ZP_04645841.1| transcriptional activator protein CopR [Lactobacillus jensenii
           269-3]
 gi|282932316|ref|ZP_06337751.1| transcriptional regulatory protein DltR [Lactobacillus jensenii
           208-1]
 gi|238831822|gb|EEQ24156.1| transcriptional activator protein CopR [Lactobacillus jensenii
           269-3]
 gi|281303537|gb|EFA95704.1| transcriptional regulatory protein DltR [Lactobacillus jensenii
           208-1]
          Length = 223

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG-EVFPL 149
            D G DD + KP   +E+LAR+ +  RR + + N  +     +F D  + E+       L
Sbjct: 91  LDDGADDYLTKPFSLKELLARLRSKERR-EDNYNTKKMQLANLFLDVENQEISSRNSVRL 149

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             +E  +L+YL+ N+ K ++   IFS ++   D    EN+V  ++S LR+KL+
Sbjct: 150 STKETELLQYLLLNKDKFLSTQTIFSHVWK--DSEENENIVWIYVSYLREKLK 200


>gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 239

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 22/226 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIG-KG 57
           ++++D A + D      GD+G  +     G   L     L+     D   ++  L G  G
Sbjct: 7   LIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRL---LEQDGPWDALVLDVMLPGVDG 63

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            +V +  R +  +  VP+I IS   S    +   + G DD + KP    E++ARV A+ R
Sbjct: 64  LQVCQRARAMARY--VPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLR 121

Query: 118 RLKVSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R +     A       E G +++    R   V G    L  RE  +L +   +  +  A+
Sbjct: 122 RAEAMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFAR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            ++ + ++G +     E+ V +HI++LR K+      DP + +R L
Sbjct: 182 MELLNQVWG-YQHDGYEHTVNTHINRLRSKIEP----DPANPRRLL 222


>gi|170782838|ref|YP_001711172.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157408|emb|CAQ02597.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 252

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 8/147 (5%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R IRAH   S VP++ ++     +  ++  D+G DD + KP   RE++ RV A+ R
Sbjct: 56  LEVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLR 115

Query: 118 RL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R     V       GP  +    R+    G +  L  RE  +L +L+ N  +   +  + 
Sbjct: 116 RTVPEAVPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLL 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
            +++G   E  + + V  H+ +LR+K+
Sbjct: 176 RSVWGW--EIGDLSTVTVHVRRLREKI 200


>gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
 gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
          Length = 234

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 97/221 (43%), Gaps = 38/221 (17%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYP 82
           EG+ +LE    +  LQ +  +D   +   L+       ++ R IRA  +  P+I ++   
Sbjct: 25  EGYETLEAYDGQSGLQLALEQDPDLVLLDLMLPKMNGFDVCRSIRAEGKNTPVIMLTARE 84

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---------VSNNRAETGPIRV 133
                +   + G DD + KP   RE+LARV A  RR +         V +NR E G I V
Sbjct: 85  EENDKVMGLELGADDYITKPFSMRELLARVKANIRRREMAGNAPAAPVGSNRLEAGRISV 144

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV--VE 191
             D       G+   L +RE  +L +L A  GK      +FS       EA+ ENV   E
Sbjct: 145 DQDLMVAYKDGKALDLTQREYELLRFLAARPGK------VFSR------EALMENVWNYE 192

Query: 192 SHISKLR------KKLRNKLGFDPVD-----SKRFLGYSID 221
            ++  +R      ++LR K+  DP       ++R  GY ++
Sbjct: 193 GYVGDVRAVDVAVRRLREKVEDDPAQPQIIVTRRGQGYLLN 233


>gi|332286933|ref|YP_004418844.1| two component response regulator [Pusillimonas sp. T7-7]
 gi|330430886|gb|AEC22220.1| two component response regulator [Pusillimonas sp. T7-7]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 6/151 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPI 131
            P++ ++   +LQ  +   + G DD + KP    E+ AR+AA+ RR +     R + G +
Sbjct: 73  TPVLILTAQGALQDRVRGLNLGADDFLTKPFALEELEARLAALVRRSRGRQAPRMQCGSL 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              S+ R   ++G +  L  RE+  L  L+   G  V K+Q+F+ ++   D     + +E
Sbjct: 133 IYDSESRAFGLEGAILHLTPREQAALAVLITRSGMPVEKSQLFNRVFE-HDSEAGLDAIE 191

Query: 192 SHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
             + +LRKKL    G D  + + R LGY ++
Sbjct: 192 VVLHRLRKKL---AGSDVHIVTVRGLGYMLE 219


>gi|329929102|ref|ZP_08282895.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328936885|gb|EGG33317.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 12/203 (5%)

Query: 13  DGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           D  I    +  +++EGF  +   + EE L+  A  D   +   ++      ++  + IR 
Sbjct: 11  DSSIGEMVESYLTMEGFQVVLAKDGEEALERFAERDYDLVLLDMMLPKISGMDFLKKIRE 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRA 126
            S VP++ +S              G DD + KP    E+ ARV A  RR+    ++    
Sbjct: 71  KSHVPVLIVSAKDGEVDKALGLGFGADDYITKPFSMVELTARVKAAIRRVTAYVIAPPTE 130

Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +   IRV       D       G+   L  +E +IL+  M N  K   K  IF++++   
Sbjct: 131 QNKIIRVHELEMDLDHLTVTKNGQEIKLTAKELQILKLFMTNPKKVFTKQHIFTSVWN-D 189

Query: 182 DEAVEENVVESHISKLRKKLRNK 204
           D   +ENV+  H+S+LR K+ ++
Sbjct: 190 DYFGDENVINVHMSRLRDKIEDQ 212


>gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 14/150 (9%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR +K
Sbjct: 64  EVTRRIREQHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLRRFMK 123

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ-I 173
           ++  +A      E G + +  D R   + G+   L  +E  IL YL+A+  K+V   + I
Sbjct: 124 LNQPKADIKTSLEYGGLVITPDQRTVTLYGKTIDLTPKEFDIL-YLLASHPKKVFNVENI 182

Query: 174 FSAIYGLFDEAVEE--NVVESHISKLRKKL 201
           F  ++G   EA  E  N V  HI  LRKKL
Sbjct: 183 FQQVWG---EAYFEGGNTVMVHIRTLRKKL 209


>gi|295837253|ref|ZP_06824186.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826427|gb|EFG64844.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 237

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 16/171 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR  
Sbjct: 70  VSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFG 129

Query: 121 VSNNRAET------GPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +    E       GP+R     V ++G +   +G+   L   E R+L    A  G  ++
Sbjct: 130 HAGGGGEPVETGADGPLRFGDLEVDTEGMEVRREGKRIALTPTEMRLLLEFSAAPGTVLS 189

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+   ++  +    +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 190 RDQLLERVWD-YGWGGDTRVVDVHV----QRLRAKIGQDRIETVRGFGYKL 235


>gi|262202521|ref|YP_003273729.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262204066|ref|YP_003275274.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085868|gb|ACY21836.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087413|gb|ACY23381.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 244

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  +   ++ ++       T+     G DD + KP   RE++AR+ A+ RR +
Sbjct: 69  VEVCRQLRTFTNAYIVMVTARADEVDTVVGLSVGADDYLTKPFRPRELMARIDAMLRRPR 128

Query: 121 VSNNRAETGPIRVFSDGRDP---EVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFS 175
            +    E+ P  +     DP   EVQ E  P  L R E  +LE L    G   ++ Q+ +
Sbjct: 129 PTPT-GESHPRTIGELTLDPQGREVQVESTPVELTRTEFDVLEALTRRPGVVFSREQLLT 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            I+G  D   + +VVE H++ LR+KL
Sbjct: 188 EIWGP-DWVGDAHVVEVHVASLRRKL 212


>gi|283797816|ref|ZP_06346969.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1]
 gi|291074501|gb|EFE11865.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1]
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRAET 128
           ++P++ ++   S    +   D G DD + KP    E  AR+  + +R    K        
Sbjct: 79  KIPVMMLTAKDSELDVVAGLDGGADDYMTKPFGILEFSARIRNLLKRFSDDKQEEKNLSV 138

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G I +  + R+  ++G+   L  +E  +L YLM N  + V + ++   I+G +D   E  
Sbjct: 139 GDISIDLEKREVRMRGQEVELTLKEYELLCYLMENTSRVVTREELLDRIWG-YDYDGETR 197

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ HI  LR+KL        + + R +GY I
Sbjct: 198 TLDMHIKTLRQKLGE--AGHSIKTVRGVGYRI 227


>gi|260589217|ref|ZP_05855130.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|260540298|gb|EEX20867.1| regulatory protein VanR [Blautia hansenii DSM 20583]
          Length = 220

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 106/217 (48%), Gaps = 19/217 (8%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65
           ++ L+++GY+       VS   ++  E   ++Q++   D+  ++  L G  GE+VL  P+
Sbjct: 18  EKVLIQEGYM-------VS-HAYSGTEALLFMQNNT-PDLILLDLMLPGLSGEEVL--PK 66

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           I    S +P+I +S    ++  +    +G  D + KP    E+LAR+    R+L  + + 
Sbjct: 67  I----SDIPVIVMSAKVDVKDKVALLLNGAVDYITKPFDIDELLARIIVQLRKLDKATHS 122

Query: 126 AETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            +     +F D    EV+   +   L + E  IL+ LM N  + + KT +   I     +
Sbjct: 123 EKLVFDEIFLDITTHEVRVCDQEVKLTKTEFAILKLLMENPKQIITKTILLDRISEDTPD 182

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E ++   HIS LRKKLR   G D +++   +G+ +
Sbjct: 183 CMESSL-RVHISNLRKKLREASGKDYIEAVWGIGFKM 218


>gi|212711730|ref|ZP_03319858.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM
           30120]
 gi|212685832|gb|EEB45360.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM
           30120]
          Length = 223

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R    +P+I ++   ++   +   + G +D + KP    E+LARV     +LKV
Sbjct: 61  EILKILRTAKNIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVK---NQLKV 117

Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   + T  I   ++     + E  G+   L R+E  +L + + +  + + +T I S ++
Sbjct: 118 NQPVSTTMTIADLKIDLTRHEVERGGQKIILTRQEFSLLLFFVLHCDEILPRTLIASEVW 177

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G+ FD   + N+++  I +LRKK+ ++     +++ R +GY ++
Sbjct: 178 GIDFDS--DTNIIDVAIRRLRKKIDDEFEIKLIETIRGMGYRLN 219


>gi|171319254|ref|ZP_02908370.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171095556|gb|EDT40520.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 239

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 24/210 (11%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-V 73
           Y  +   DG   EG   LE   W          A+   L+  G   LE+ R  RA ++  
Sbjct: 29  YEVVHSADGT--EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMARYT 77

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPI 131
           P+I  S   S    +   + G DD + KP    E++ARV A+ RR+     ++R + G +
Sbjct: 78  PIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRIDAGTL 137

Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            V     DP      V G    L  RE  +L +   + GK  ++  + +A++G   E   
Sbjct: 138 DVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYRHEGY- 196

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           E+ V +HI++LR K+      DP +  R L
Sbjct: 197 EHTVNTHINRLRAKVEA----DPAEPVRIL 222


>gi|157148189|ref|YP_001455508.1| hypothetical protein CKO_04000 [Citrobacter koseri ATCC BAA-895]
 gi|157085394|gb|ABV15072.1| hypothetical protein CKO_04000 [Citrobacter koseri ATCC BAA-895]
          Length = 224

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +R   Q +P++ ++   ++   +   + G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  LEVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFEIEELDARLRALLRRS 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +      F D     +Q +   L  RE+ +L  LM  R + V++ Q+F  ++ 
Sbjct: 120 AGQVQELQQLGDLAFHDEGYFLLQAQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           L DE   E+ +E +I +LRKKL+       + + R LGY ++  
Sbjct: 180 LSDEVSPES-IELYIHRLRKKLQGS--NVRITTLRGLGYVLECG 220


>gi|149191185|ref|ZP_01869443.1| DNA-binding response regulator GltR [Vibrio shilonii AK1]
 gi|148835023|gb|EDL52002.1| DNA-binding response regulator GltR [Vibrio shilonii AK1]
          Length = 242

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 10/134 (7%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L+ D  L K G+     +DGV +E F        +++    D+  ++  L   G+    L
Sbjct: 18  LLLDEYLTKSGFQVSTAEDGVEMELF--------IKAKGYPDLILLDVML--PGDDGFTL 67

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            + +R  SQVP+I ++        +   + G DD + KP   R+++AR+ A+ RR  ++ 
Sbjct: 68  CQRVRRDSQVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRRTHLNG 127

Query: 124 NRAETGPIRVFSDG 137
           ++AE  P R    G
Sbjct: 128 DKAEETPPRTIDFG 141


>gi|55979989|ref|YP_143286.1| response regulator [Thermus thermophilus HB8]
 gi|55771402|dbj|BAD69843.1| response regulator [Thermus thermophilus HB8]
          Length = 223

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
            G DD + KP   RE+LAR+ A+ RR      R   GP+ V   GR   ++GE   L   
Sbjct: 94  EGADDYLGKPFSLRELLARIKALLRRAG-KEGRRRFGPLEVDLGGRRAYLEGEPLRLSPT 152

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  +L       G+   + ++   ++G   E   E VV++++  LRKKLR+    DP ++
Sbjct: 153 EMNLLLVFAQAPGRVFTRGELLERVWGPEFEG-SERVVDAYVRLLRKKLRD----DP-EA 206

Query: 213 KRFL 216
            RF+
Sbjct: 207 PRFI 210


>gi|19551523|ref|NP_599525.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62389170|ref|YP_224572.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21323036|dbj|BAB97665.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324503|emb|CAF18843.1| PUTATIVE TWO COMPONENT RESPONSE REGULATOR [Corynebacterium
           glutamicum ATCC 13032]
          Length = 222

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 30/225 (13%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRI 66
           D  IA F   G+  EGF     E   ++ AR      +  ++        G  VLE  R 
Sbjct: 10  DAGIADFIVRGLIREGFECEVTESGAEAFARAHSGDFDLMVLDLGLPHMDGTDVLEQLRN 69

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           ++    +P+I ++   +++  L   + G DD + KP    E+LAR+     +L+++ +  
Sbjct: 70  LQV--TLPIIVLTARTNIEDRLRTLEGGADDYMPKPFQFAELLARI-----KLRLAKHTP 122

Query: 127 ETGPI--RVFSDGRDPE---------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  P   RV  +G D E         + G    L RRE  +LE LM + G+ +++ Q+  
Sbjct: 123 QETPTDARVLRNG-DLELDLRTQRVLIDGSWHDLSRREVDLLETLMRHPGQILSRVQLLR 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ + D     NVV+ +I  LRK    K+G   V++ R  GY +
Sbjct: 182 LVWDM-DWDPGSNVVDVYIRALRK----KIGAHRVETIRGSGYRL 221


>gi|113474756|ref|YP_720817.1| two component transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110165804|gb|ABG50344.1| two component transcriptional regulator, winged helix family
           [Trichodesmium erythraeum IMS101]
          Length = 243

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+       
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGGNG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVIQVSTIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKL 201
              E  V+  VV+ HIS+LR KL
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKL 213


>gi|330466864|ref|YP_004404607.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328809835|gb|AEB44007.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 213

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R++R  + VP+I  +     Q+ +    +G DD + KP     + AR+ ++ RR+    +
Sbjct: 49  RMLRGITDVPIIIATARDDEQSVVKLLRAGADDYMVKPFTGAHLDARITSVLRRVG-RAS 107

Query: 125 RAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           RAE       G +RV    R  ++ GE   L R+E  +L YL A  G+ V++ ++   ++
Sbjct: 108 RAEQPVVLSVGGLRVDLGERSAQLDGESLALTRKEFDLLAYLAARPGRVVSRRELLEEVW 167

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
                  E+  ++ H+  LR+K+
Sbjct: 168 -RQPSVGEDQTIDVHLYWLRRKM 189


>gi|313683111|ref|YP_004060849.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155971|gb|ADR34649.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
          Length = 220

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +R  S +P+I  S    L   +   + G DD + KP   RE++AR+ ++ RR+ 
Sbjct: 61  LDVCKALRERSDIPIIISSARSDLGDKVIALELGADDYLPKPYEPRELVARIQSLLRRIN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +A +   RV   G   E  GE+ PL R E  +L  L+ +R + +++  I + +   
Sbjct: 121 GKTIQASSEMFRVDETGIYKE--GELLPLTRAEFELLALLIKHRRQIISRDFIANNV--- 175

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
             E+++    E  I  L  ++R K+  +P     + S R +GY
Sbjct: 176 --ESIQWESSERSIDVLISRIRQKIEANPKHPTLIRSIRGMGY 216


>gi|301163703|emb|CBW23257.1| putative two component system response regulator [Bacteroides
           fragilis 638R]
          Length = 225

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 18/175 (10%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  + +R    V +I   D  SL   +   + G DD + KP H  E+ AR+ +
Sbjct: 57  GNGLNLLEQLKKMRKRENVIIISAKD--SLDDKVQGLELGADDYLPKPFHLAELNARIKS 114

Query: 115 IYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           + RR        ++++N R      +VF D ++ E       L R+E  IL Y     G+
Sbjct: 115 VIRRQRRDGEMDIRLANIRIVPDTFQVFVDDKEIE-------LNRKEYDILLYFANRPGR 167

Query: 167 RVAKTQIFSAIYGLFDEAVEE-NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V K  +  +++G   + V+  + + + I  LRKKL++      + +    GY +
Sbjct: 168 LVNKNTLAESVWGDHIDQVDNFDFIYAQIKNLRKKLKDAGALAELKAVYGFGYKM 222


>gi|294631812|ref|ZP_06710372.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292835145|gb|EFF93494.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 229

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 11/161 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + +P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR    +   
Sbjct: 68  IRKRTAIPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRTVHEDTTG 127

Query: 127 E-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        G +R+    R   V G V  L R+E  +L  L    G    + QI S ++ 
Sbjct: 128 DDGDGALSLGSVRIELPTRQVSVAGAVVQLTRKEFDLLALLAQRPGVVFRREQIISEVWR 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E      +E H++ LR KLR     + V   R +GY +
Sbjct: 188 TSWEGTGRT-LEVHVASLRAKLRMPALIETV---RGVGYRL 224


>gi|239993573|ref|ZP_04714097.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii ATCC
           27126]
          Length = 237

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 15/140 (10%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI---RVFSDG-------RDP 140
            + G DD + KP +HRE++AR+ AI RR    +N + TG      +F +G       +  
Sbjct: 98  LEMGADDYLPKPFNHRELVARIKAIVRR----HNLSSTGGAVEQDLFVNGIFLSPSSQLA 153

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           +V      L   E  IL  LM N  +RV K +I   I G   +A + + ++ H+S LRKK
Sbjct: 154 KVDDVELTLTTTEFLILRLLMLNAAQRVTKEEISLKILGKPLQAFDRS-IDMHVSNLRKK 212

Query: 201 LRNKLGFDPVDSKRFLGYSI 220
           +      + + + R +GY +
Sbjct: 213 ISAVAVDEKIKTIRGVGYML 232


>gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 241

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 9/151 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +RA    P+I ++   S    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 68  LEVAKRVRAKHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQA 127

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    +N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 128 AVKAPAEEDNNTDIQVGDLVIHPEAYTVSKRGENINLTHREFELLHYLAEHIGQVINREH 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 188 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 217


>gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 236

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 22/221 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY      DG       +LE  E +Q     D+  ++  L  +    +E+ R +R 
Sbjct: 22  LTKEGYTVYCAYDG-----EEALEKVEEVQP----DLIVLDIMLPKRDG--MEVCREVRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS------- 122
              +P+I ++   S    +   + G DD V KP   RE++ARV A  RR + +       
Sbjct: 71  KYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQTPAAPGEE 130

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N    G + +  D      +GE   L  RE  +L YL  + G+ + +  +   ++G 
Sbjct: 131 EESNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREHLLETVWG- 189

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +D   +   V+  + +LR+K+  N    + + ++R +GY +
Sbjct: 190 YDYYGDVRTVDVTVRRLREKVEDNPSHPEWIVTRRGVGYYL 230


>gi|322831204|ref|YP_004211231.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321166405|gb|ADW72104.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 220

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 6/155 (3%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R    +P++ ++   +L+  +D  D+G DD + KP    E+ ARV A+ RR +  S+N+ 
Sbjct: 68  RQSISLPVLILTARDALEDRVDGLDAGADDYLIKPFALVELQARVRALIRRYQGQSDNQI 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G +++    +   +      +  +E  IL  LM   G+ V +  +   +Y   D+ + 
Sbjct: 128 SVGNLKINLSSQQAYLNDAPVEVTPKEFAILSRLMMRAGQTVNRELLQQDLYTWQDD-LG 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            N +E H+  LR+    KLG + + + R +GY ++
Sbjct: 187 SNTLEVHVHNLRR----KLGKEVIRTVRGIGYRLE 217


>gi|302558018|ref|ZP_07310360.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302475636|gb|EFL38729.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 229

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 10/160 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
           IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR   + +  
Sbjct: 69  IRKRTGTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRSVPEEATG 128

Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ET    GP+R+    R   V G    L R+E  +L  L    G    + QI S ++  
Sbjct: 129 STETELRLGPVRIELPTRQVTVNGAPVQLTRKEFDLLALLAQRPGVVFRREQIISEVWRT 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E      +E H++ LR KLR     + V   R +GY +
Sbjct: 189 SWEGTGRT-LEVHVASLRAKLRMPALIETV---RGVGYRL 224


>gi|291520925|emb|CBK79218.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 209

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDP 140
            T +  FD G  D + KP   RE+LARV  I   + + N   +     G   + +D    
Sbjct: 73  NTIVRAFDEGAQDYIVKPFRIRELLARVRRILS-VNIKNGEKDNIIYMGHAAIHTDEAKV 131

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
            V  ++  L   E R+L    +N+G  + + QI   I+      VE+N +  ++ +LR+K
Sbjct: 132 YVNDKIIELTALEYRLLLIFASNKGILLTRQQILDKIWDADGNFVEDNTLTVYVKRLREK 191

Query: 201 LRNKLGFDPVDSKRFLGYSID 221
           L   +  + V   R +GY +D
Sbjct: 192 LGEAIHIETV---RGMGYRVD 209


>gi|302535152|ref|ZP_07287494.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444047|gb|EFL15863.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 237

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 36/231 (15%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL +DG++     DG+S LE F +           R D++ ++  +   G   + L R I
Sbjct: 22  ALERDGFVVTAMPDGLSGLESFRA----------NRPDIALLDVMV--PGMDGVSLCRRI 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------K 120
           R  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR         
Sbjct: 70  RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRRFGHAGGPQN 129

Query: 121 VSNNRAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +N  A             G + V ++G +    G    L   E R+L    +  G  ++
Sbjct: 130 GANGSAGADGSDERGVLSFGDLEVDTEGMEVRRAGAPVALTPTEMRLLLEFSSAPGTVLS 189

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++   ++  +D   +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 190 RDRLLERVWD-YDWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 235


>gi|315498979|ref|YP_004087783.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315416991|gb|ADU13632.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 224

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 17/202 (8%)

Query: 17  ALFGDDGVSLEGFNSL---EFEEWLQSSARE---DVSAIEAFLIG-KGEKVLELPRIIRA 69
           AL    G+S +GF S+   + E  L++  RE   DV  ++  + G  G  +LE+ R    
Sbjct: 14  ALTMQKGLSEQGFESVVTHDGEAGLKA-LREGEFDVVVLDRMMPGLDGVSMLEIAR--SE 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAE 127
              VP++ +S    L+  +    +G DD + KP    E++AR+ A+ RR           
Sbjct: 71  GMDVPVLFLSALGELEDRVYGLKAGADDYLVKPYALVELVARLEALLRRKDTGAVETTLR 130

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            G + +    R  +       L  RE ++LE+LM + G+ V +T +   ++   FD   +
Sbjct: 131 VGDLEMNLISRVVKRGNSEIDLQPREFQLLEFLMRHVGQSVTRTMLLEKVWAYHFDP--Q 188

Query: 187 ENVVESHISKLRKKLRNKLGFD 208
            NV++ HIS+LR KL    GFD
Sbjct: 189 TNVIDVHISRLRAKLDK--GFD 208


>gi|229017879|ref|ZP_04174762.1| Sensor histidine kinase [Bacillus cereus AH1273]
 gi|229024084|ref|ZP_04180555.1| Sensor histidine kinase [Bacillus cereus AH1272]
 gi|228737180|gb|EEL87704.1| Sensor histidine kinase [Bacillus cereus AH1272]
 gi|228743470|gb|EEL93587.1| Sensor histidine kinase [Bacillus cereus AH1273]
          Length = 232

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ  +  +V  +   ++      LE+ + +R ++ VP++ +S    
Sbjct: 26  EGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 85

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIR-----VFS 135
               +    +G DD + KP +  E++ARV A+ RR    N    + E G IR     +  
Sbjct: 86  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNAATPKNEDGIIRIRTVEIHK 145

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 146 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 204

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 205 NLRDKLETVMNGEKLIHTVWGVGYKIE 231


>gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
 gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
          Length = 231

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR  
Sbjct: 62  LEVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSS 121

Query: 121 VSN---NRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N    + E G IR+ S          +V GE   L   E  IL  L +N G+  +  +
Sbjct: 122 FQNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           IF  ++   D       V  HIS LR KL
Sbjct: 182 IFERVWN-EDGYGSNKTVMVHISNLRDKL 209


>gi|226948065|ref|YP_002803156.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842279|gb|ACO84945.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 6/145 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N  +   I +  D R+  +  +   L  RE  IL+ LM    K   K+ +F +
Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIYNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++   +   ++N +  HIS LR KL
Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKL 208


>gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 232

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 79/176 (44%), Gaps = 22/176 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR  
Sbjct: 63  IELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYT 122

Query: 121 VSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT- 171
             N  A            + +    R   + GE   L + E  IL YLMA    RV  T 
Sbjct: 123 YFNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEIL-YLMAAAKNRVFTTE 181

Query: 172 QIFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
           +I+ +++   + A E  N V  HI+    +LRNK+  DP + K       +GY I+
Sbjct: 182 EIYESVWK--ERAYESNNTVMVHIA----RLRNKIEEDPKEPKFIQNVWGVGYKIE 231


>gi|157363824|ref|YP_001470591.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157314428|gb|ABV33527.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 228

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 70/138 (50%), Gaps = 3/138 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
            VP++ ++   ++   +     G DD + KP   RE+LAR+ ++ RR  ++         
Sbjct: 77  NVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRSNITKGEEINFKG 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +++ S  R   V+  V  + +RE  +LE  + N G   ++ +I   ++   ++ ++ NV+
Sbjct: 137 LKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKVWE-NEKIIKSNVI 195

Query: 191 ESHISKLRKKLRNKLGFD 208
           + +I  LR KL+   G+D
Sbjct: 196 DVYILYLRNKLK-PYGYD 212


>gi|300721189|ref|YP_003710457.1| response regulator in two-component regulatory system with CpxA
           regulates genes involved in folding/degrading
           periplasmic proteins OmpR family protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|139522417|gb|ABO77646.1| CpxR [Xenorhabdus nematophila]
 gi|297627674|emb|CBJ88197.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 230

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 20/195 (10%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISD 80
           + +EGFN +   +  Q+    D S+I+  L+      +  +E  + +R + Q P+I ++ 
Sbjct: 21  LEMEGFNVVIAHDGEQALQYID-SSIDLLLLDIMMPRKNGIETLKELRQYHQTPVIMLTA 79

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-PI-----RVF 134
             S    +   + G DD + KP + RE++AR+ AI RR   S  +A+ G PI        
Sbjct: 80  RGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNWSEQQADIGTPILEIDKLQL 139

Query: 135 SDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL----FDEAVEENV 189
           S GR +    G +  L   E  +L  L  + G+ V++  +   + G     FD A     
Sbjct: 140 SPGRQEASFDGTILDLTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRA----- 194

Query: 190 VESHISKLRKKLRNK 204
           ++ HIS LR+KL N+
Sbjct: 195 IDMHISNLRRKLPNR 209


>gi|110834226|ref|YP_693085.1| DNA-binding heavy metal response regulator [Alcanivorax borkumensis
           SK2]
 gi|254429959|ref|ZP_05043666.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|110647337|emb|CAL16813.1| DNA-binding heavy metal response regulator, putative [Alcanivorax
           borkumensis SK2]
 gi|196196128|gb|EDX91087.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 222

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59
            +L++D  L+ +G  A     G S++   +      L  Q S R  +  +     G G  
Sbjct: 3   LLLVEDDYLLTNGLSAQLEKAGFSVDTARTAREARHLGQQESYRAGILDL-GLPDGNGLD 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           VL+  R  +     P++ ++     Q  ++   +G DD + KP    E++AR+ AI RR 
Sbjct: 62  VLKQWRTHKV--SFPVLILTARGDWQDKVNGLKAGADDYLAKPFQTEELIARLHAIVRRS 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +       T       + R     G+     L   E R+L  LM+  G+  +K Q+   +
Sbjct: 120 EGRIMDTLTAGRFELDENRQTLRAGDETEHSLTGTEFRLLRCLMSRPGQVFSKEQLLDQL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           Y + D+   ENV+E+++ +LRK     +G D + ++R  GY  D
Sbjct: 180 YSI-DDIPSENVIEAYVRRLRK----LVGPDTIKTRRGQGYLFD 218


>gi|119386803|ref|YP_917858.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377398|gb|ABL72162.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 184

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R IR +    P++ ++     ++ L  F  G DD + KP +  E++AR+ AI RR 
Sbjct: 60  MEVLRQIRMSRIDTPILILTGSDDTESKLRGFGFGADDYMTKPFNRDELVARIQAIIRRS 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K  S +   TG + V  D R  EV G    L  +E +ILE L   +G  + K    +  Y
Sbjct: 120 KGHSQSVIRTGEMVVNLDARSVEVGGRAVNLTGKEYQILELLSLRKGTTLTKEMFLNHFY 179


>gi|116691688|ref|YP_837221.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116649688|gb|ABK10328.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
          Length = 221

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 20/215 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L + G+      DG +  G   +E         R D+  ++A L G  G  VL   R +R
Sbjct: 20  LARLGHAVDLETDGATANGLLRVE---------RFDLVVLDANLPGMDGFTVL---RHLR 67

Query: 69  AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           A  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR     N   
Sbjct: 68  ASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHANDVL 127

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAV 185
           T G + +    R  E+  +   L R+E  +LE ++A+R +R+ +K ++ + ++   +E  
Sbjct: 128 TLGGLVIDRSSRLAELDSQPLSLSRQEFALLE-ILASRPQRIFSKEELLNQLFSFGNEPT 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             N VE +++++RKKL+       + + R +GY I
Sbjct: 187 -ANAVEQYVTRVRKKLQGS--SVEIRTARGMGYQI 218


>gi|295680605|ref|YP_003609179.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295440500|gb|ADG19668.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 224

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 6/151 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLKVSNNRAETG 129
           S+VP++ ++    L   +   D G DD V KP H  E+LAR+ A+  RR   +++R    
Sbjct: 71  SKVPILILTARDDLDARVQGLDFGADDYVLKPFHLPELLARIRAVLRRRAGFASSRLGND 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +  D R     G    L  RE  ++   +   G  +++ Q+   +YG + + VE N 
Sbjct: 131 TLNLDLDKRTLCCNGVSSVLSAREFALMFAFLERPGTILSRDQLEGKLYG-WGKEVESNA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V+  I  +RK    K G   + + R LG+++
Sbjct: 190 VDVLIHGVRK----KFGQSVIRNVRGLGWTV 216


>gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 232

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 15/164 (9%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI+R     P++ ++        +   + G DD V KP   RE++ARV A  RR  ++N 
Sbjct: 66  RILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGINNG 125

Query: 125 RAETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +  I V +   D      E  G    L  RE  +L++L+ANRG   ++  +   ++G
Sbjct: 126 EGMSNVIIVNNLSIDLSKYKVEKNGRPIELTSREFDLLKFLVANRGLIFSREMLLEKVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            ++   +   V+  I +LR+K+ +    DP     + +KR +GY
Sbjct: 186 -YEYFGDVRTVDVTIRRLREKIED----DPANPRYIHTKRGVGY 224


>gi|228933286|ref|ZP_04096142.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826447|gb|EEM72224.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 234

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 77  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 136

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 137 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 195

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 196 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 231


>gi|227534581|ref|ZP_03964630.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631045|ref|ZP_04674076.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|227187830|gb|EEI67897.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239527328|gb|EEQ66329.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 246

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR +  V+N 
Sbjct: 85  VRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQNEVTNT 144

Query: 125 RA---ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179
                E GP+ +  D  +   + G+   L   E  IL YL+A+   RV +  +IF  ++ 
Sbjct: 145 EPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 203

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 204 Q-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 245


>gi|163842887|ref|YP_001627291.1| transcriptional activator protein copR [Brucella suis ATCC 23445]
 gi|163673610|gb|ABY37721.1| Transcriptional activator protein copR [Brucella suis ATCC 23445]
          Length = 235

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 13/156 (8%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   +    +G DD + KP    E+LARV  + RR   S   A+T   
Sbjct: 72  ETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRR--SSPREADTIYR 129

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            G + +         Q     L  RE R+LEYLM + G+ V +T +   ++   FD   +
Sbjct: 130 VGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVWNYHFDP--Q 187

Query: 187 ENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            NV++ HIS+LR K+    GFD   + + R  GY +
Sbjct: 188 TNVIDVHISRLRSKIEK--GFDEPLLHTVRGAGYML 221


>gi|159043004|ref|YP_001531798.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
 gi|157910764|gb|ABV92197.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
           12]
          Length = 227

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 15/178 (8%)

Query: 48  AIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106
           AI   ++G    V EL R  RAH + +P++ +S    ++       +G DD V KP H  
Sbjct: 50  AIVDVMLGSDSGV-ELVRTARAHGATLPILMLSALSGVEDRATGLAAGADDYVVKPFHFD 108

Query: 107 EILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
           E++A       RL+V  +RA      P R+    R  E+  +   L  RE  +L  L+ +
Sbjct: 109 ELVA-------RLRVQEHRALAQRVSPARLIRTSRRLEMGPDSVTLTEREFDLLALLIRS 161

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
                 ++Q+ + ++   + A  ENVV+ ++  LR+KL     GF+ + + R  G+ I
Sbjct: 162 GEDPQPRSQLHATLWA-AEGASTENVVDVYVGYLRRKLETADFGFE-IKTVRNRGFCI 217


>gi|104781224|ref|YP_607722.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95110211|emb|CAK14918.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 226

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 11/154 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGP 130
            P++ IS    +   +    +G DD + KP    E+ ARV  + RR    ++  R +   
Sbjct: 74  TPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSTPMTQTRLQVAD 133

Query: 131 IR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
           +    +  + R  E    + P    E ++LEYLM + G+ + +  IF  ++G  FD    
Sbjct: 134 LELDLISHEARRGEQSLNLLP---TEYKLLEYLMRHSGQVITRMMIFEEVWGYHFDPGT- 189

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N+++ HI +LRKK+ +      + + R  GY+I
Sbjct: 190 -NLIDVHIGRLRKKIDSPGQTPLIRTVRGSGYAI 222


>gi|78221908|ref|YP_383655.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193163|gb|ABB30930.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 220

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 6/134 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGE-VFPL 149
            D G DD + KP    E+LAR+ A+ RR   S     T  +          V GE    L
Sbjct: 91  LDLGADDYLVKPFAVGELLARIRAVSRRQTGSAAPLLTNGVVTLDPVSKEAVCGERRCRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             RE  +L+ L+   G  +++ ++ + IYG ++E VE N VE  I  +RK    KLG + 
Sbjct: 151 TAREFSLLQALLVRPGAILSRDELETRIYG-WNEEVESNAVEFLIHSVRK----KLGSES 205

Query: 210 VDSKRFLGYSIDWN 223
           + + R +G+ +D N
Sbjct: 206 IRNVRGMGWMVDRN 219


>gi|729183|sp|Q02540|COPR_PSESM RecName: Full=Transcriptional activator protein CopR
 gi|151181|gb|AAA25803.1| transcriptional activator [Pseudomonas syringae]
          Length = 227

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R +R   Q VP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EVIRRLRTAGQPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRRGS 120

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+V  +  + G ++V    R     G+   L  +E  +LE LM  +G+ ++K+ I S +
Sbjct: 121 SLQVQTS-LQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + FD   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 180 WDMNFDS--DTNVIEVAIRRLRAKIDDDFEVKLLHTCRGMGYMLE 222


>gi|16081017|ref|NP_391845.1| two-component response regulator YxdK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311939|ref|ZP_03593786.1| hypothetical protein Bsubs1_21391 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316263|ref|ZP_03598068.1| hypothetical protein BsubsN3_21302 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321175|ref|ZP_03602469.1| hypothetical protein BsubsJ_21250 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325459|ref|ZP_03606753.1| hypothetical protein BsubsS_21401 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321313531|ref|YP_004205818.1| two-component response regulator YxdK [Bacillus subtilis BSn5]
 gi|1176993|sp|P42421|YXDJ_BACSU RecName: Full=Transcriptional regulatory protein yxdJ
 gi|709991|dbj|BAA03300.1| hypothetical protein [Bacillus subtilis]
 gi|2636512|emb|CAB16002.1| two-component response regulator [YxdK] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291486589|dbj|BAI87664.1| hypothetical protein BSNT_06087 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320019805|gb|ADV94791.1| two-component response regulator (YxdK) [Bacillus subtilis BSn5]
          Length = 229

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 7/162 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR HS  P+I IS        +   ++G DD + KP  +  +LA++ +  RR      
Sbjct: 65  RQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K      E   +++F +  +   Q E   L ++E ++LE L+    K  ++ ++    +
Sbjct: 125 AKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKESKLLEVLLERGEKVTSRDRLMEKTW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D  +++N +  +I++LRKKLR       +++ R  GY +
Sbjct: 185 DT-DIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQL 225


>gi|327473497|gb|EGF18917.1| nisin biosynthesis regulatory protein NisR [Streptococcus sanguinis
           SK408]
          Length = 253

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E  + IR     P+I +S   + +  +   + G DD + KP   ++ +A+V +  +R  
Sbjct: 86  IEFCQQIRKEINSPIIFVSALDTDEGIIQALNIGGDDFIVKPFSLQQFIAKVNSHLKREE 145

Query: 119 ---LKV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              LKV   +  R    PI ++ + R   V+ +   L  RE  ILE L  N  K  +K +
Sbjct: 146 RAKLKVEKEARKRRSIPPIEIYLEERMLYVENKPLSLTYREYNILELLSRNPYKVFSKEE 205

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           I+  +Y     A+  ++ E +I ++R K  +  G +P+ + R  GY   WN
Sbjct: 206 IYEQVYDEESSALFRSISE-YIYQIRVKF-SSFGINPIKTIRGTGYK--WN 252


>gi|325523766|gb|EGD02019.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 221

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 83/159 (52%), Gaps = 7/159 (4%)

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR     
Sbjct: 64  RNLRASGSTTPVLLLTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHA 123

Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLF 181
           N   T G + +    R  E+ G+   L R+E  +LE ++A+R +R+ +K ++ + ++   
Sbjct: 124 NDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKEELLNQLFSFG 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E    N VE +++++R+KL        + + R +GY I
Sbjct: 183 NEPT-ANAVEQYVTRVRRKLSGS--SVEIRTARGMGYQI 218


>gi|295677593|ref|YP_003606117.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437436|gb|ADG16606.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 265

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR   V  +V  L  RE  +LE L+   G+ V+K Q
Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+    G   + + R LGY ++
Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 219


>gi|255319403|ref|ZP_05360619.1| transcriptional regulator protein [Acinetobacter radioresistens
           SK82]
 gi|262380867|ref|ZP_06074018.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255303539|gb|EET82740.1| transcriptional regulator protein [Acinetobacter radioresistens
           SK82]
 gi|262297502|gb|EEY85420.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 228

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S +P+I ++        +   + G DD + KP   +E++ARV A+ RRL 
Sbjct: 61  LTICRKVREQSDIPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLD 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179
                 +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I   
Sbjct: 121 RKAEPEQNSLFRIDKAQQRIWYQQKSLNLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
            FD  V + V++SHI  LR+K+ +
Sbjct: 181 SFD--VADRVIDSHIKNLRRKITD 202


>gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 32/223 (14%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE---DVSAIEAFLIG-KGEKVLELP 64
            L  +GY     +DG +  GF          S AR+   DV  ++  L G  G +V    
Sbjct: 19  GLTAEGYGVDVANDGTT--GF----------SMARQNPYDVIILDIMLPGMNGYQVCR-- 64

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           ++  A  + P++ ++         D  D G DD + KP     + AR+ A+ RR +  + 
Sbjct: 65  KLREAEVRTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRRSVSTAP 124

Query: 124 NRAETGPIRVFSDGRDPEVQ----GEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              E G + +     DP  +    GE    L  +E  +LEYL +  G+ V+KT++   ++
Sbjct: 125 TVWEFGDLVI-----DPAAKTVRRGEADISLTAKEFAVLEYLASRAGEVVSKTEVLEHVW 179

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +D  V  N+VE +IS LR+KL    G   + + R  GY +
Sbjct: 180 DFAYDGDV--NIVEVYISYLRRKLDAPFGRQAITTLRGAGYRL 220


>gi|228927049|ref|ZP_04090115.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229121535|ref|ZP_04250762.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228661999|gb|EEL17612.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228832784|gb|EEM78355.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 228

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 71  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 131 IQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 190 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 225


>gi|255305139|ref|ZP_05349311.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 231

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 14/142 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S++P++ ++     +     F++G DD + KP   +E+L RV AI +R+     R 
Sbjct: 70  LRKTSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILKRVYPEKER- 128

Query: 127 ETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +VF D    +++       GE   L  +E ++ E L  N+G+ V    +  AI G
Sbjct: 129 -----KVFFDAATVDLEKAIVQRSGENISLTAKEFQLFEKLYENQGRIVTTGALCQAICG 183

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            F +   E+ + +HI  LR+K+
Sbjct: 184 DFWQGY-ESTLATHIRHLREKI 204


>gi|183599417|ref|ZP_02960910.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827]
 gi|188021661|gb|EDU59701.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827]
          Length = 231

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 2/150 (1%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L + R +R   ++P+I ++        L   + G DD + KP   RE++ARV
Sbjct: 60  LMLPGMDGLTICRELRKFCEIPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARV 119

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKT 171
             I RR + + +  ++ P  +  +       GE +  L   E R+L+++  N G   ++ 
Sbjct: 120 KTILRRCQRAASPDKSRPQLIIDENAFQVRYGEQLLELTPAEFRLLKFMSDNAGTVFSRD 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q+   +Y      V +  ++SH+  LR+KL
Sbjct: 180 QLLDILYD-DHRIVTDRTIDSHVKNLRRKL 208


>gi|170759641|ref|YP_001785959.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406630|gb|ACA55041.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 16/208 (7%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N  +    EE L+   RE+V+ +   ++      LE+ +  R    +P++ +S    
Sbjct: 25  EGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEVCKRARQKYSIPILMLSAKVE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFSD 136
               ++   +G DD V KP +H E+  R+ A+ RR       +++S+N      + +   
Sbjct: 85  DMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFLNTKMQISDNIIRIESMVIDKK 144

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEENVVESHI 194
                +      L  RE  IL  L  NRG   +  +IF  ++    F      N V  H+
Sbjct: 145 QHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFEKVWKERYFQ---SNNTVMVHM 201

Query: 195 SKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           S+LR K+   + G   + +   +GY I+
Sbjct: 202 SRLRDKIEQHMEGSKVIHTVWGVGYKIE 229


>gi|251795759|ref|YP_003010490.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543385|gb|ACT00404.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 225

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 15/207 (7%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRIIRAHSQVPLIGISD 80
           ++ EG+  LE +  L++ A  +   ++  ++     +   L L    R +  +P+I ++ 
Sbjct: 21  LTREGYRVLEAQNGLEAIAVLEKQPVDLAILDVMLPIVDGLTLCEFTRKNYDIPIILLTA 80

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR---VFSDG 137
              L      + SG DD V KP    EIL RV A++RR  +    A +  IR   +  D 
Sbjct: 81  RDQLSDKEQGYLSGTDDYVTKPFELPEILYRVKALFRRYSL----ASSDKIRLNQLIIDR 136

Query: 138 RDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
           ++ E+    EV  LP +E  +L  L    G+  ++ ++   I+G  D   +E  ++ HI 
Sbjct: 137 KNYEIVDGEEVQMLPLKEFELLAQLAEYPGRVFSRDELIRIIWGT-DYNGDERTIDVHIK 195

Query: 196 KLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +LRK+    + GF  + + R +GY ++
Sbjct: 196 RLRKRFPETERGF-VIHTIRGIGYKLE 221


>gi|163856324|ref|YP_001630622.1| transcriptional regulatory protein [Bordetella petrii DSM 12804]
 gi|163260052|emb|CAP42353.1| Transcriptional regulatory protein [Bordetella petrii]
          Length = 225

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 11/155 (7%)

Query: 57  GEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           GE  L + R +RA +   P++ ++    L   +   D+G DD + KP    E+LAR+ A+
Sbjct: 57  GESGLSVLRALRARYDATPVLLVTARDQLSERIGGLDAGADDYIVKPFQLDELLARLRAV 116

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAK 170
            RR   S NR  T  +       DP  +     G    L + E   L  LM   G+ + +
Sbjct: 117 LRR---SRNRV-TPLLACAGVTLDPATRQVRRDGVEVTLSQHEYLTLLALMERPGRSLTR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
            Q+  A+YG     +E N +  ++ +LR+KL + +
Sbjct: 173 EQLEDAVYG-GHGTIESNTIAVYVHQLRRKLGDHI 206


>gi|49184828|ref|YP_028080.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165870203|ref|ZP_02214859.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167638281|ref|ZP_02396558.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705986|ref|ZP_02896448.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650778|ref|ZP_02933675.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566316|ref|ZP_03019234.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229604715|ref|YP_002866357.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684552|ref|ZP_05148412.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721309|ref|ZP_05183099.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734855|ref|ZP_05192567.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741256|ref|ZP_05198944.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755510|ref|ZP_05207544.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760046|ref|ZP_05212070.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|49178755|gb|AAT54131.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714091|gb|EDR19612.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513582|gb|EDR88951.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170128988|gb|EDS97853.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172083239|gb|EDT68300.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562451|gb|EDV16418.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229269123|gb|ACQ50760.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 254

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 97  LRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 156

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 157 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 215

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 216 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 251


>gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 239

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 24/210 (11%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-V 73
           Y  +   DG   EG   LE   W          A+   L+  G   LE+ R  RA ++  
Sbjct: 29  YEVVHSADGT--EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMARYT 77

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPI 131
           P+I  S   S    +   + G DD + KP    E++ARV A+ RR+     ++R + G +
Sbjct: 78  PIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRIDAGTL 137

Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            V     DP      V G    L  RE  +L +   + GK  ++  + +A++G   E   
Sbjct: 138 DVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGY- 196

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           E+ V +HI++LR K+      DP +  R L
Sbjct: 197 EHTVNTHINRLRAKVEA----DPAEPVRIL 222


>gi|219667787|ref|YP_002458222.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538047|gb|ACL19786.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 225

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 106/223 (47%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   +++    L  +DG  + E  +  E  E + S A   ++ I+  L+       
Sbjct: 5   MIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKI-SEANPSLAVID--LMMPNMDGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R  +  +P++ ++        +  F++G DD + KP    E+L RV A+ RR +
Sbjct: 62  ELCRQLRQGYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALMRRYR 121

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  ++  + G + +  +     + G    +P +E  +L  L    G+   + Q+   ++G
Sbjct: 122 IEASQTIQIGYVTLDKNSYSVILNGVGEDIPMKEFELLFKLGGFPGRTFTRDQLLEGVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            +D    E  ++ HI +LR++    K GF  + + R LGY ++
Sbjct: 182 -YDFDGNERTLDVHIGRLRERFPAEKSGF-KITTVRGLGYRLE 222


>gi|317056902|ref|YP_004105369.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449171|gb|ADU22735.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 220

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 15/132 (11%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF------ 147
           G DD V KP +   +L R++A+ +R     NR  T  +++F D     V+G +       
Sbjct: 94  GADDYVTKPYNPTILLLRISAVLKRF----NR--TSTLQMFHDAEVSTVKGSISRNGREQ 147

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L + E  I + L   +G+ V +  + +A++   DE V +N +  +IS+LR KL + LGF
Sbjct: 148 VLTKNEMIIFQLLFDRQGEIVTRDDLMTALWD-NDEFVNDNALSVNISRLRGKLAD-LGF 205

Query: 208 -DPVDSKRFLGY 218
            D +++++  GY
Sbjct: 206 EDAIETRKKQGY 217


>gi|229124627|ref|ZP_04253812.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228658967|gb|EEL14622.1| DNA-binding response regulator [Bacillus cereus 95/8201]
          Length = 222

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 59  EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 117

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + +T   +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 118 CNQQHDTTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 178 VWG-HNVVVNPNVVDLYIGYIRKKLKCEKKNRYIQTIHGRGYSM 220


>gi|226324237|ref|ZP_03799755.1| hypothetical protein COPCOM_02016 [Coprococcus comes ATCC 27758]
 gi|225206685|gb|EEG89039.1| hypothetical protein COPCOM_02016 [Coprococcus comes ATCC 27758]
          Length = 233

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S++P+I +S     +  +   D G DD V KP +  E+LAR+    R+  
Sbjct: 64  IEIIKNVREISKIPIIVVSARQEEEEKIQALDLGADDYVTKPFYMGELLARIRVALRK-- 121

Query: 121 VSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            SN   E    ++F         +     + G+   L   E +IL+ L+ NRGK +    
Sbjct: 122 -SNQIPEEKKEKIFQCDYLKVDWEKHQVSIDGKEVHLTPMEYKILKLLIDNRGKVLTHNY 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           I   I+G   + VE   +   ++ LR+K+    G
Sbjct: 181 ILGQIWG-SAQGVEAANLRVFMAALRRKIEKDPG 213


>gi|254427529|ref|ZP_05041236.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196193698|gb|EDX88657.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 240

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L + R +R+  + P++ ++        +   + G DD V KP+  R +LAR+
Sbjct: 60  LMLPGADGLTVCREVRSAYKNPILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARI 119

Query: 113 AAIYRRLKV------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR++       S  R E G + + +  R+  + GE   L   E  +L  L +N G 
Sbjct: 120 RALLRRVETDSERDNSPARLEFGALVIDNSAREVTLAGESVDLTSAEYDLLWLLASNAGT 179

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
            +++  IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 180 VLSRETIFEKLRGIQYDG-QDRSIDVRISRIRP----KVGDDPENPKRI 223


>gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 224

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 98/208 (47%), Gaps = 6/208 (2%)

Query: 16  IALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           IA +   G++ EG+N   + +  + L+ +       +   L+  G   LE+ R +RA S 
Sbjct: 13  IAGYLRRGLTFEGYNVEIAADGRQALEIARERPPDLVVLDLMLPGIDGLEVARRLRAASD 72

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130
           VP+I ++   ++   +   ++G DD + KP    E+LAR+    RR +  +       GP
Sbjct: 73  VPIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQREDTATVLRYGP 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +     +  +      L  +E  +LE  M +  + + +  I+  ++G ++   E N++
Sbjct: 133 LTMDLTAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVMTRDVIYDRVWG-YNFGGESNII 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E ++  LR+KL  +     + + R +GY
Sbjct: 192 EVYVRYLRQKLEARGEPRLIHTVRGVGY 219


>gi|77414843|ref|ZP_00790958.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77159106|gb|EAO70302.1| DNA-binding response regulator [Streptococcus agalactiae 515]
          Length = 217

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 6/116 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGE-VFP 148
            D+G DD + KP   +E+LAR+ ++ RRL+  + N    G  RV     + E+Q E    
Sbjct: 91  LDAGADDYLTKPFSLKELLARLRSMSRRLEDFTPNVLSLG--RVTLSVGEQELQCENTIR 148

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL--FDEAVEENVVESHISKLRKKLR 202
           L  +E ++L + M N  K ++  Q+F  ++G     E V+E  V  ++S LR+KL+
Sbjct: 149 LAGKEAKMLAFFMXNHDKELSTQQLFEHVWGADKDQEDVDEGYVFIYVSYLRQKLQ 204


>gi|163845708|ref|YP_001633752.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222523414|ref|YP_002567884.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163666997|gb|ABY33363.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447293|gb|ACM51559.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 228

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++   A     G  +    +    E LQ +  E    I   L+  G   +
Sbjct: 5   ILVVDDEASIRNVAKAYLEHAGYRV--LCATTGPEGLQMALEEQPDLIVLDLMLPGMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S V ++ ++        +     G DD + KP   RE++ARV AI RR + 
Sbjct: 63  EITARLRERSDVYILMLTARSDEMDRVAGLRVGADDYLTKPFSPRELVARVEAILRRQR- 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N  A++  +R      DPE +     G++  L   E  +L  L  N  + +++  +   
Sbjct: 122 -NKTAKSSLMRFTHVEIDPEAREARANGQLLELTPTEFDLLLALARNHNRVLSREDLIEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G  D    + VV+ ++S+LR+K+    G + + + R +GY
Sbjct: 181 VWG-ADFFGTDRVVDVYVSQLRRKIEAITGENVIRTARGVGY 221


>gi|229827614|ref|ZP_04453683.1| hypothetical protein GCWU000182_03003 [Abiotrophia defectiva ATCC
           49176]
 gi|229788252|gb|EEP24366.1| hypothetical protein GCWU000182_03003 [Abiotrophia defectiva ATCC
           49176]
          Length = 224

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 75/150 (50%), Gaps = 2/150 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKVSNNRAETGPI 131
           +P++ ++    +   ++  D G +D + KP   +E+LAR+ A+ R ++   ++  E G +
Sbjct: 73  IPVLLLTAKSEVDDKVEGLDLGANDYLTKPFEPKELLARIRAMTRSKMAEGDSVLEYGNV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +         +   F L  +E +++E LM+     ++  +    I+G FD   + +VV 
Sbjct: 133 SLNRASFVLSTKTGEFKLSNKEFQMMELLMSYPKNLISAEKFMEKIWG-FDTEADISVVW 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +IS LRKKL +      +   R LGYS++
Sbjct: 192 VYISYLRKKLASLKADIEIKVTRNLGYSLN 221


>gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
          Length = 248

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 80  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 139

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ +++  E G + +  + R  +V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 140 LNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 198

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL-----RNKL 205
           IF  ++   D+  E  N V  HI  LRKKL     +NKL
Sbjct: 199 IFQQVWA--DDYFEGGNTVMVHIRTLRKKLGEDKRKNKL 235


>gi|226356970|ref|YP_002786710.1| response regulator OmpR [Deinococcus deserti VCD115]
 gi|226318960|gb|ACO46956.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 228

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 5/155 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +S VP+I ++   ++   +     G DD + KP H  E+LARV    R+ +++ + +
Sbjct: 76  LRKNSAVPIIVLTARDTVDEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ-RITESLS 134

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAV 185
             G + +    R    + E   L  +E  IL  L+   G+  ++ +I   I+ G   E  
Sbjct: 135 -MGDLTLDPQKRLVTYKAEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEG- 192

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             NVV+ H++ LR KLR+  G+  + + R +GY++
Sbjct: 193 -SNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYAL 226


>gi|166368005|ref|YP_001660278.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166090378|dbj|BAG05086.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 250

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 16/201 (7%)

Query: 9   ALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL ++GY AL   DG V+LE   S   +E     +R D+  ++  L       L++ R++
Sbjct: 37  ALEEEGYEALGVSDGRVALELLQS---QESNHGESRFDLVVLDLML--PQINGLDICRLL 91

Query: 68  RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           R H  + P++ +S   S    +   + G DD + KP   RE++AR  A+ RR   ++  A
Sbjct: 92  RYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRALIRRQGFTSLAA 151

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              P+R F D           V+ E   L  +E R+L+  M+   +  ++ Q+   I+G 
Sbjct: 152 --APVRKFRDVLLYPQECRVTVRDEEINLSPKEFRLLDLFMSYPRRVWSREQLIEQIWGP 209

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D   +   V+ HI  LR+KL
Sbjct: 210 -DFLGDTKTVDVHIRWLREKL 229


>gi|126172546|ref|YP_001048695.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|152998839|ref|YP_001364520.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|217971506|ref|YP_002356257.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304411761|ref|ZP_07393373.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307306187|ref|ZP_07585932.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125995751|gb|ABN59826.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151363457|gb|ABS06457.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|217496641|gb|ACK44834.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349949|gb|EFM14355.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911060|gb|EFN41487.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
          Length = 225

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 108/224 (48%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A   D  +  F + G ++E  +       L +S++ D+  ++  L    G K+
Sbjct: 3   ILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQLDGLKL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L   R     +Q P++ +S    +   +    +G DD + KP    E+L R   +  R  
Sbjct: 63  LAALRA--TGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQ 120

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + V+ +    G +++    R+  + G+   L  +E ++L+YLM +  + +++T +F A+
Sbjct: 121 SVPVTTDLV-VGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   FD     NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 180 WDYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|113869661|ref|YP_728150.1| response regulator [Ralstonia eutropha H16]
 gi|113528437|emb|CAJ94782.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 224

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 6/179 (3%)

Query: 28  GFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHS-QVPLIGISDYPS 83
           GF      + LQ+ AR      +A L+     G+  L + + +RA   + P++ ++   +
Sbjct: 24  GFVIEHVADGLQAEARLQAEEYDAVLLDLRLPGKDGLAVLKSMRARDDRTPVLILTAQDT 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEV 142
           L   +   + G DD + KP    E+ AR+ A+ RR +  ++ R + G +    + R   +
Sbjct: 84  LDERVRGLNLGADDYLPKPFAIAELEARLLALIRRSRGRAHPRLQCGTLVFDGETRSFTL 143

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            G    L  RE  +L  L+A  G+ + K Q+   ++ L D  V  + +E  + +LRKKL
Sbjct: 144 DGAPLALTPRESTLLGALLARSGQPLTKAQLLDKVFSL-DADVSPDAIEVLVYRLRKKL 201


>gi|30020095|ref|NP_831726.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218235313|ref|YP_002366679.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|29895645|gb|AAP08927.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218163270|gb|ACK63262.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 225

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 68  LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +     +   LP +E  +L  L A  G+  ++ Q+   I+G +D   
Sbjct: 128 IQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWG-YDFEG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 187 NERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLE 222


>gi|332702286|ref|ZP_08422374.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552435|gb|EGJ49479.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 225

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 22/195 (11%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95
           ++ ++   D   ++  L   G   L + + +R+     P++ +S    +   +    +G 
Sbjct: 38  YMAAAGSYDAMVVDRML--PGVDGLTIVKTLRSTGNATPVLFLSAMGEVDDRVRGLKAGG 95

Query: 96  DDVVNKPIHHREILARVAAIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEV 146
           DD + KP    E+LAR+ A+ RR         LKV++   +     V   GR  E+Q + 
Sbjct: 96  DDYLTKPYAFAELLARLEALDRRAGAVTGGTMLKVADLEMDLVGRSVRRAGRSIELQPKE 155

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKL 205
           F L       LEYLM + G+ V +T +   ++   FD   + NV++ HIS+LR+K+    
Sbjct: 156 FAL-------LEYLMRHAGQVVTRTMLLENVWDYSFDP--QTNVIDVHISRLRQKIDKDF 206

Query: 206 GFDPVDSKRFLGYSI 220
               + + R  GYS+
Sbjct: 207 DRPLLHTVRGSGYSL 221


>gi|295837871|ref|ZP_06824804.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74]
 gi|295826712|gb|EFG64995.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74]
          Length = 274

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 9/168 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL+L R  RA    P++ +++  +    +    +G D+ V+KP    E++AR+  + 
Sbjct: 96  GLSVLQLMR--RAQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLI 153

Query: 117 RRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR    + S +    G + +  D  +    G    L   E  +L YLM N  + ++K QI
Sbjct: 154 RRAGAGRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQI 213

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              ++  +D   + NVVE +IS LR+K+    G +P + ++R  GY I
Sbjct: 214 LDRVWS-YDFGGQANVVELYISYLRRKIDR--GREPMIHTRRGAGYLI 258


>gi|228961335|ref|ZP_04122951.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798343|gb|EEM45340.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 223

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I +S   +    +   + G DD + KP +   ++A++ A+ RR   S  
Sbjct: 64  RKIREVSKVPIIFLSSRDNPMDMVMAMNMGGDDFMQKPFYTDVLVAKIQALMRR-TYSYT 122

Query: 125 RAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ET  +    V  + +  EV    ++  L + E +IL+ LM N G  V++  I   ++ 
Sbjct: 123 QTETNVVEYEGVVLNLQSGEVTYHNQILELTKNEFKILQILMQNIGSIVSRDNIMRKLWE 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  V++N +  +++++RKKL      + + +K+  GY I
Sbjct: 183 -NESFVDDNTLTVNVARVRKKLAELGKEEFIHTKKGQGYII 222


>gi|161521632|ref|YP_001585059.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352202|ref|YP_001947829.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221210801|ref|ZP_03583781.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|160345682|gb|ABX18767.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189336224|dbj|BAG45293.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221169757|gb|EEE02224.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
          Length = 221

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 81/154 (52%), Gaps = 6/154 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR     +   T
Sbjct: 69  AGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHASDVLT 128

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAVE 186
            G + +    R  E+ G+   L R+E  +LE ++A+R +R+ +K ++ + ++   +E   
Sbjct: 129 LGGLVIDRSSRLAELDGKPLSLSRQEFALLE-ILASRPQRIFSKDELLNQLFSFGNEP-S 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N VE +++++RKKL+       + + R +GY I
Sbjct: 187 ANAVEQYVTRVRKKLQGS--SVEIRTARGMGYQI 218


>gi|110597758|ref|ZP_01386042.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340665|gb|EAT59145.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 222

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 88/168 (52%), Gaps = 16/168 (9%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +R   S VP++ ++   +L+  +   D+G +D + KP    E+LAR+    R  
Sbjct: 60  IEVCRQVRKGGSTVPILFLTAKDTLEDVVFGLDAGANDYIKKPFEFEELLARIRVQLR-- 117

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQI 173
             + NR E   + V S   +P V  +VF       L  +E  +LEYL+ N+ +   +++I
Sbjct: 118 --TTNRVEES-LSVGSLSINP-VTHQVFSGSTELTLTPKEFALLEYLIRNKDRVCTRSRI 173

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++ + FD   + +V++ +I+ LR+KL +    + + + R +GY +
Sbjct: 174 IEHVWDIHFDS--DTSVIDVYITFLRRKLESAGCGNIIQTIRGVGYIV 219


>gi|56540675|gb|AAV92791.1| PmrA [Salmonella bongori]
 gi|56540677|gb|AAV92792.1| PmrA [Salmonella bongori]
          Length = 222

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLARVRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRR--- 118

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            NN+ E+    G + +        + G+   L  +E  +L  LM   G  V +  +++ I
Sbjct: 119 HNNQGESELTVGKLTLNMGRHQVWMDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYML 216


>gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. CB0205]
          Length = 253

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 21/169 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S+VP+I ++    +   +     G DD + KP   +E+ AR+  + RR+       
Sbjct: 75  IRAQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRVSSVQANG 134

Query: 127 ETGPIRVFS-----------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             GP R              + R      E   L   E  +LE L++  G+ +++  +  
Sbjct: 135 VAGPGRTSHVVVVGDLSIDFNKRQAHRGDERIRLTGMEFNLLELLLSRSGEPISRLDMLE 194

Query: 176 AIYGLFDE-AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            ++G   E + +  VV+ HIS+LR KL +    DP     + + R LGY
Sbjct: 195 KVWGYKPERSSDSRVVDVHISRLRAKLED----DPENPELILTARGLGY 239


>gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 232

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 14/205 (6%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDY 81
           GV+ +G   LE    +  S   D+  ++  L G  G +VL   R+ +  + VP+I ++  
Sbjct: 30  GVAEDGRKGLE----MAQSGEWDLVLLDVMLPGLNGIEVLR--RLRQGGNTVPVILLTAR 83

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141
            ++   +  F+ G  D V KP    E+LARV  I R         E   +    D     
Sbjct: 84  DTVPDKVSGFEHGASDYVTKPFAMEELLARVRNILRIFAQHTKEVEGADLIKVGDLTVEL 143

Query: 142 VQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
              +VF       L  RE  +L YL  ++ +  ++  I S ++G +D   E N+V+ +I 
Sbjct: 144 RTRKVFRKELAVDLTPREFELLVYLAEHKNEEKSREDILSEVWG-YDFIGETNLVDVYIR 202

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220
            LR+KL     +  + + R +GY +
Sbjct: 203 YLRQKLDKGFRYKLIHTVRGVGYML 227


>gi|319764024|ref|YP_004127961.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317118585|gb|ADV01074.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 243

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 6/140 (4%)

Query: 67  IRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +R H  S++P++ +++    +  +     G DD + KP+   E++AR+ A+ RR   S+ 
Sbjct: 66  VRRHLGSELPILFVTNRQEERDIVQGLACGADDFMVKPVRVGELMARIQALLRRAYPSST 125

Query: 125 RA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           R    E G  R     R  E+ G    L  RE  +  +L  N G+ +++  +   I+G  
Sbjct: 126 REGVLEFGRYRFLPATRSLEMDGVPVELKAREYELALFLFQNIGRLLSRDHLREIIWGHS 185

Query: 182 DEAVEENVVESHISKLRKKL 201
            E +  + +++HIS+LR  L
Sbjct: 186 AEVISRS-LDTHISRLRSLL 204


>gi|268611080|ref|ZP_06144807.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 224

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 8/157 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I+    +P+I +S   +    L  F+ GVDD V KP    E++AR+  I    + +  ++
Sbjct: 67  IKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPMELMARIKVILSHSRNAEQKS 126

Query: 127 ETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++G      I + + G    V GE   L  +E  +L  L+ N+G  +++ +I + ++G +
Sbjct: 127 DSGKLTVSGIEIDTLGLTVTVNGEKADLTAKEYALLLLLVKNKGIVLSRDRILNEVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D    +  V+  I  LR KL +    D + + R +GY
Sbjct: 186 DSFGVDRTVDWQIKLLRSKLGDYR--DSIKTVRGVGY 220


>gi|260169549|ref|ZP_05756360.1| Transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261759076|ref|ZP_06002785.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261739060|gb|EEY27056.1| transcriptional regulatory protein [Brucella sp. F5/99]
          Length = 228

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +     G DD V KP    E+LARV A+ R
Sbjct: 64  IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         LKV +   +    RV+   ++ EV      L   E R+LEY M + G+  
Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++Q+   ++G  D  V++  V+ H+ +LRK +      D + + R  GYS
Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYS 226


>gi|238922143|ref|YP_002935657.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Eubacterium eligens
           ATCC 27750]
 gi|238873815|gb|ACR73523.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Eubacterium eligens
           ATCC 27750]
          Length = 223

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 11/169 (6%)

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +  L  + +  S +P++ ++    +   ++  D+G +D + KP   RE+LAR+  + R  
Sbjct: 60  ITALKNLRKCGSNIPVLMLTAKTEIDDKVEGLDNGANDYLTKPFDTRELLARIRVLTRSE 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA--- 176
           K  +N    G I + +   +       F L  +E +++   M N      KTQ+ SA   
Sbjct: 120 KQQDNVITLGNISLNTTTCELSSPSGSFLLTNKEYQMMLMFMNN------KTQVISAEHF 173

Query: 177 IYGLFDEAVEENV--VESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  ++D   + ++  V ++IS LR+KL        + ++R +GY +  N
Sbjct: 174 MEKIWDSESDSDISTVWTYISYLRRKLEALKSDYSIATRRNMGYYLKNN 222


>gi|228945599|ref|ZP_04107949.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228814117|gb|EEM60388.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 234

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 77  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 136

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 137 IQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 195

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 196 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 231


>gi|229095303|ref|ZP_04226295.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228688162|gb|EEL42048.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 242

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVAVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 135

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N   +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 136 TNEHKQIQYHGIVWDETKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 237


>gi|229014012|ref|ZP_04171136.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229135662|ref|ZP_04264439.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228647760|gb|EEL03818.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228747268|gb|EEL97147.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 229

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 64/150 (42%), Gaps = 8/150 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +    + S  
Sbjct: 66  RRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQASKK 125

Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +G ++ A ++  V SHI  LR KL  K  +
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214


>gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4]
 gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4]
          Length = 240

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 9/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVS----NNRAET 128
           P++ ++   +++  +     G DD V KP    E++ R+  I RR  KVS    + R + 
Sbjct: 86  PVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGKVSVEEQSARIKF 145

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             I +  D R+    G++  L   E  +L Y M N G  ++K +I   ++  +D   E  
Sbjct: 146 ADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDHVWN-YDFGGEVG 204

Query: 189 VVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VVES++S LR+K+    G  P + + R +GY
Sbjct: 205 VVESYVSYLRRKVDT--GETPLIHTLRGVGY 233


>gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
 gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
          Length = 237

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 74/179 (41%), Gaps = 23/179 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR     P+I ++   S    ++    G DD + KP    E++AR  A  RR  
Sbjct: 63  FELLRTIRTERTYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRRYT 122

Query: 121 VSNNRAET------GPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
               R ++      GPI  F+      D R   V  +       E  IL YL  +RG  V
Sbjct: 123 SYGTREQSVAAEDAGPIIAFNGLSINKDARTVTVDEKPVRCTPLEYSILLYLAEHRGCVV 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221
              ++F A++     A   N V  HI  LR+KL      D   + RF+      GY+I+
Sbjct: 183 PVEELFRAVWDEEFMAGSNNTVMVHIRHLREKLG-----DDAQNPRFIKNIWGVGYTIE 236


>gi|189183277|ref|YP_001937062.1| transcriptional activator protein CzcR [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180048|dbj|BAG39828.1| transcriptional activator protein CzcR [Orientia tsutsugamushi str.
           Ikeda]
          Length = 245

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 24/203 (11%)

Query: 9   ALVKDGYIA---LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +L  +G IA     G DG+ +      ++   +      D+S  E  L  + +K+     
Sbjct: 19  SLANEGIIADKAHLGKDGIEISKL--YDYSLIILDLMLPDISGYEVLLSLRSQKI----- 71

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNN 124
                 Q P++ +S   ++   +     G DD + KP    E+ ARV AI RR K  S  
Sbjct: 72  ------QTPVLILSGLSTIDNKIKGLSFGADDYITKPFDSDELSARVKAIIRRSKGHSEA 125

Query: 125 RAETGPIRVFSDGRDPEV----QGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               G + +  D R   +    + +  P  L  +E +ILE L   +G  + K    S +Y
Sbjct: 126 VIRVGHLSINLDTRSVSMYNKDKQKNMPIHLTNKEYKILELLAIKKGTVLTKEMFLSHLY 185

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
              DE  E  +++  I KLR+KL
Sbjct: 186 SGIDEP-EIKIIDVFICKLRRKL 207


>gi|167737322|ref|ZP_02410096.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei 14]
          Length = 239

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q
Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 219


>gi|163838816|ref|YP_001623221.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952292|gb|ABY21807.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 247

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 7/163 (4%)

Query: 43  REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           R DV  ++  L G  G ++L   R+   +  +P + ++   ++Q  +    +G DD V K
Sbjct: 65  RPDVLVLDIMLPGFDGVELLGKIRLFAPN--IPALFLTAKDAVQDRVAGLTAGGDDYVTK 122

Query: 102 PIHHREILARVAAIYRRLKV-SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           P    E+L R+  I +R  V + + AE   G + +  D R      +   L   E  +L 
Sbjct: 123 PFSMEEVLLRLHRIVQRAGVIAEDSAEVRVGDLVLNHDTRQVTRGADDVTLTATEFELLR 182

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           YLM N  + ++KTQI   ++  +D   + N+VE +IS LRKK+
Sbjct: 183 YLMENPKRVISKTQILDRVWN-YDFGGQVNIVELYISYLRKKI 224


>gi|119896456|ref|YP_931669.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
           BH72]
 gi|119668869|emb|CAL92782.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
           BH72]
          Length = 236

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 7/151 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETG 129
           ++P+I ++     Q  +   ++G DD + KP   RE++AR+ A+ RR   + + +  E G
Sbjct: 76  EIPIIMLTARGEEQDKVAGLETGADDYITKPFSPRELVARIKAVLRRRAPQATEDAVELG 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEE 187
            +R+               L   E R+L +LM +  +  ++ Q+   ++G  +F   VEE
Sbjct: 136 GLRLDPATHRVTAGERALSLGPTEFRLLHFLMTHAERVHSRAQLLDQVWGDHVF---VEE 192

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             V+ HI +LR  L        + + R  GY
Sbjct: 193 RTVDVHIRRLRCALEPSAHDALIQTVRGSGY 223


>gi|73541850|ref|YP_296370.1| phosphate regulon transcriptional regulatory protein phoB
           [Ralstonia eutropha JMP134]
 gi|72119263|gb|AAZ61526.1| Phosphate regulon transcriptional regulatory protein phoB
           [Ralstonia eutropha JMP134]
          Length = 235

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 17/160 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
           Q+P+I ++     Q  +   ++G DD V KP   +E+LAR+ A+ RR         + ++
Sbjct: 76  QIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--L 180
             R +    RV  +     ++ ++ P    E R+L +LM +  +  +++Q+   ++G  +
Sbjct: 136 GLRLDPATHRVTGEDNAGPIKLDLGP---TEFRLLHFLMTHPERVHSRSQLLDQVWGDHV 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F   VEE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 193 F---VEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229


>gi|119357020|ref|YP_911664.1| two component transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354369|gb|ABL65240.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 222

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 4/162 (2%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +R A S VP+I ++   +L+  +   D+G +D + KP    E+LAR+    RR 
Sbjct: 60  IEVCRQVRKAGSSVPIIFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRN 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++    G + V         +     L  +E  +LE+L  N+ K   +++I   +  
Sbjct: 120 NPESDAITAGFVTVNPVTHQVFCRDTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVRD 179

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + FD   + ++++ +I+ LRKKL      + + + R +GY I
Sbjct: 180 MHFDS--DTSIIDVYINFLRKKLDCSGCGNIIQTIRGVGYII 219


>gi|332994543|gb|AEF04598.1| two component transcriptional regulator [Alteromonas sp. SN2]
          Length = 226

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 2/146 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I ++    L+  L  F  G DD + KP    E++ARV A+  R     N+   G + 
Sbjct: 74  IPVIMLTARDQLEDKLTGFQKGADDYLIKPFAMAELVARVTALSGRRSAQVNQLVMGNVT 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  +G++ +       L      +L+ LM  +G  V++ ++  A +   D   E NV++ 
Sbjct: 134 LKINGQEAQAGSNNIKLSPITYALLKKLMQAKGDVVSRERLIEAAWK--DSVPESNVLKV 191

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218
           H+  LRK L        V SK   G+
Sbjct: 192 HMHHLRKGLEQAKASISVLSKPNSGF 217


>gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 220

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 19/161 (11%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A  +VP++ ++         +  D+G DD + KP  +  ++ARV A+ RR      RA  
Sbjct: 69  AGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR------RARP 122

Query: 129 GPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           GP  V   G        R    +G    L  +E  +LE+L+   G+ VAK +I   ++  
Sbjct: 123 GPSPVHVHGGLTVDTAARRVLREGVEVALTAKEFAVLEHLVLRPGEVVAKAEILDHVWD- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           F    + N+VE +IS LR+    KLG + + + R  GY ++
Sbjct: 182 FAYDGDPNIVEVYISALRR----KLGAERIRTVRGAGYRLE 218


>gi|301028803|ref|ZP_07191985.1| transcriptional regulatory protein [Escherichia coli MS 196-1]
 gi|299878209|gb|EFI86420.1| transcriptional regulatory protein [Escherichia coli MS 196-1]
          Length = 145

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 8/119 (6%)

Query: 92  DSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGPIRVFSDGRDP-----EVQG 144
           + G DD + KP   +E++ARV A++RR +    N R E G IR      DP      + G
Sbjct: 1   EMGADDYLPKPFSVQELIARVKALFRRQEAMGQNIRLEGGLIRCHGLHIDPLAREVRLCG 60

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           E+  L  RE  +L +   + G+  ++  +   ++G   E   E+ V +HI++LR K+ +
Sbjct: 61  ELIDLTPREFDLLYWFARHPGEVFSRLSLLDNVWGYQHEGY-EHTVNTHINRLRTKIEH 118


>gi|257439442|ref|ZP_05615197.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198101|gb|EEU96385.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 247

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 17/146 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P++  +      + +    +G DD + KP    E++AR+A++ RR    N +A
Sbjct: 84  IRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 143

Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             G I+  +        + R        F LP +E  +L Y   ++GK + K QI+  ++
Sbjct: 144 --GAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 201

Query: 179 G---LFDEAVEENVVESHISKLRKKL 201
           G    +D++   N++ + IS+LRKKL
Sbjct: 202 GEEYFYDDS---NIM-AIISRLRKKL 223


>gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676]
          Length = 224

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KTEAAVSHEVIEAGEIVICPKKRKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKL 205


>gi|225374967|ref|ZP_03752188.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
 gi|225213219|gb|EEG95573.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 17/146 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P++  +      + +    +G DD + KP    E++AR+A++ RR    N +A
Sbjct: 67  IRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 126

Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             G I+  +        + R        F LP +E  +L Y   ++GK + K QI+  ++
Sbjct: 127 --GAIQKLNFNGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 184

Query: 179 G---LFDEAVEENVVESHISKLRKKL 201
           G    +D++   N++ + IS+LRKKL
Sbjct: 185 GEEYFYDDS---NIM-AIISRLRKKL 206


>gi|212635951|ref|YP_002312476.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212557435|gb|ACJ29889.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 227

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 77/140 (55%), Gaps = 11/140 (7%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A  Q P++ +S   S+   +     G DD + KP    E+L R+  + +R K SN+  +T
Sbjct: 69  AGKQTPVLILSALDSVSERVKGLREGSDDYLIKPFALSELLVRIEILIQR-KGSNSDKQT 127

Query: 129 GPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
             ++V +D +   +  +VF       L  +E ++L YLM + G+ V+++ +F A++   F
Sbjct: 128 NVLQV-ADLKMELLSRKVFRGKNEVILQPKEFKLLRYLMEHSGQVVSRSLLFEAVWDYQF 186

Query: 182 DEAVEENVVESHISKLRKKL 201
           D   + NV++ H+++LRKK+
Sbjct: 187 DP--QTNVIDVHMARLRKKV 204


>gi|169334592|ref|ZP_02861785.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259309|gb|EDS73275.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
          Length = 236

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 20/192 (10%)

Query: 27  EGFNSLEFE---EWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           +G+N  E E   E L+   RED+  AI   ++   + +    R+ R    +P+I +S   
Sbjct: 25  QGYNVFEAENGKEGLEVLNREDIHLAIVDIMMPVMDGITMTMRL-RETYDIPVIFLSAKS 83

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVS-------NNRAETG 129
                +   + G DD V KP    E++ARV +  RR      LK S       +NR   G
Sbjct: 84  EDIDKITGLNIGADDYVTKPFASMELIARVNSQIRRYDQILNLKHSSIKEEENSNRYVVG 143

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +  D ++  V G    L  +E +IL  L+   G+  +  QI+  ++   ++A+    
Sbjct: 144 GLELDDDTKEVTVDGNKVKLTAKEYQILRLLIKTPGRVYSSEQIYEQVWN--EKAINTET 201

Query: 190 VESHISKLRKKL 201
           +  HI KLR+K+
Sbjct: 202 IMVHIRKLREKI 213


>gi|170755180|ref|YP_001780249.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120392|gb|ACA44228.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 16/208 (7%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N  +    EE L+   RE+V+ +   ++      LE+ +  R    +P++ +S    
Sbjct: 25  EGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEVCKRAREKYSIPILMLSAKVE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFSD 136
               ++   +G DD V KP +H E+  R+ A+ RR       +++S+N      + +   
Sbjct: 85  DMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFLNTKMQISDNIIRIESMVIDKK 144

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEENVVESHI 194
                +      L  RE  IL  L  NRG   +  +IF  ++    F      N V  H+
Sbjct: 145 QHKVAINDNEIDLTAREFEILYLLANNRGMVFSAEEIFEKVWKERYFQ---SNNTVMVHM 201

Query: 195 SKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           S+LR K+   + G   + +   +GY I+
Sbjct: 202 SRLRDKIEQHMEGSKVIHTVWGVGYKIE 229


>gi|167842128|ref|ZP_02468812.1| Response regulator [Burkholderia thailandensis MSMB43]
          Length = 240

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 10/170 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L R +R HS   +I ++        +   ++  DD + KP   RE+LARV A+ RR +
Sbjct: 65  ISLARELREHSTAGIIFVTQRDGDLDRVLGLETAGDDYITKPFRLRELLARVRALLRRQR 124

Query: 121 VSNNRAETGPIRVFS----DGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + +  A    +  F     D R  E   V G V PL  RE  +L  L+  RG  + +  +
Sbjct: 125 LYHEVAPVDTVLTFDRWLIDLRRRELALVGGAVLPLTPREFDLLAALVMVRGTTLTREYL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221
              +    + A +   V++ I++LR+K+    G    P+ +   +GY +D
Sbjct: 185 LEVVSK-RERAADARTVDTLIARLRRKMSGDAGGLRCPIGTVVGVGYRLD 233


>gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
          Length = 236

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCRELRASSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 SNNRAETGPIRVFSDGRDPEV-----------QGEVFPLPRRERRILEYLMANRGKRVAK 170
           +   A +   +       P++            G    +P +E  +L +L A+  +   +
Sbjct: 125 APAPAPSSTEQQGEYVEYPDLIVNLTNYSVIYMGHSVEMPPKELELLYFLAASPNQVFTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            Q+   I+G ++   +   V+ HI +LR+K+++
Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKD 216


>gi|126642329|ref|YP_001085313.1| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
          Length = 146

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 6/145 (4%)

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRV 133
           +I I+   S+   ++  D G +D + KP    E+ AR+ A  R+  +S     T G +++
Sbjct: 1   MIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQTLSQQSILTWGDLQL 60

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
            +  +     G+   L  +E +IL  LM +    + + Q+  A+Y  + E +E N +E  
Sbjct: 61  DTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA-WGEEIESNAIEVF 119

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGY 218
           I +LRK    K+G   + + R LGY
Sbjct: 120 IYQLRK----KIGSSSIKTIRGLGY 140


>gi|28870545|ref|NP_793164.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213970019|ref|ZP_03398151.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301381374|ref|ZP_07229792.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062145|ref|ZP_07253686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302130455|ref|ZP_07256445.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28853793|gb|AAO56859.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925123|gb|EEB58686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
          Length = 222

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 24/227 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   + D  +A  G  G +++         +  +S   D+  ++  L G  G +V
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L+  R        P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 63  LQQWR--GKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+ +    + G   V  DG D ++    F       R+L Y M + G+ ++K+
Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGTDIQLTSAEF-------RLLRYFMLHPGQILSKS 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   +Y   +E  + NV+E H++ LR+    KLG   ++++R  GY
Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVIETRRGQGY 215


>gi|216538|dbj|BAA03143.1| BasR [Escherichia coli]
          Length = 222

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR---H 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY
Sbjct: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 180 N-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219


>gi|296330430|ref|ZP_06872910.1| hypothetical protein BSU6633_04979 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675976|ref|YP_003867648.1| Subtilin biosynthesis regulatory protein spaR [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|417799|sp|P33112|SPAR_BACSU RecName: Full=Transcriptional regulatory protein spaR; AltName:
           Full=Subtilin biosynthesis regulatory protein spaR
 gi|143570|gb|AAA22780.1| spaR [Bacillus subtilis]
 gi|595323|gb|AAB91594.1| SpaR [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|296152433|gb|EFG93302.1| hypothetical protein BSU6633_04979 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414220|gb|ADM39339.1| Subtilin biosynthesis regulatory protein spaR [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 220

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 6/162 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            EL + IR     P++ ++     +  +    +G DD + KP   RE+ ARV A  RR  
Sbjct: 60  FELCKQIRPLVDCPILFLTAKTEEEAIVKGLITGGDDYITKPFGVRELSARVNAHLRRER 119

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K  + R  +G +  F D ++  +      L + E +I E+L  ++G+  ++ QI+  I
Sbjct: 120 RDKHQSKRVISGFLFHF-DSKEVFINNNKLNLTKNEYKICEFLAQHKGRTFSREQIYEEI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           YGL   A+   + E  I  +RKK +     DP+ +   +GY 
Sbjct: 179 YGLEGNALYSTITE-FIRTIRKKCKEH-NADPIKTVWGVGYK 218


>gi|81427892|ref|YP_394891.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104605|gb|AAD10265.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609533|emb|CAI54579.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 228

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ + +R  SQVP++ +S   +    +    +G DD V+KP +  E++ARV ++ RR  
Sbjct: 61  IEVIKAVRKDSQVPILVVSAKTTDMDKIQGLITGADDYVSKPFNPLEVMARVKSLLRRSQ 120

Query: 119 LKVSN---NRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
            +V+N   +  E GP+ +  D  +   + G+   L   E  IL YL+A+   RV +   I
Sbjct: 121 QQVTNEVPDILEVGPLVIKRDSHEVTTIAGKQIQLTALEFGIL-YLLASHPNRVFSADDI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 180 FERVWKQ-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|94986248|ref|YP_605612.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94556529|gb|ABF46443.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 221

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 5/155 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +S VP+I ++   ++   +     G DD + KP H  E++ARV    R+ +VS + +
Sbjct: 69  LRKNSAVPIIVLTARDTVDEKVRLLGLGADDYLIKPFHPDELIARVKVQLRQ-RVSESLS 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAV 185
             G + +    R    + E   L  +E  IL  L+   G+  ++ +I   I+ G   E  
Sbjct: 128 -MGDLTLDPQKRLVTYKNEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEG- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             NVV+ H++ LR KLR+  G+  + + R +GY++
Sbjct: 186 -SNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYAL 219


>gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 242

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 12/147 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR  V  N A
Sbjct: 71  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR--VDKNGA 128

Query: 127 ETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              P         I++ ++ R      E   L   E  +LE L++  G+  ++++I   +
Sbjct: 129 SGIPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEV 188

Query: 178 YGLFDE-AVEENVVESHISKLRKKLRN 203
           +G   E  V+  VV+ HIS+LR KL +
Sbjct: 189 WGYTPERHVDTRVVDVHISRLRAKLED 215


>gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 233

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 8/174 (4%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           E  L+ + +ED + I   ++   E   ++ R +RA   VP+I +S        +     G
Sbjct: 35  ESGLKRALQEDFALILLDVMLPKEDGFQVCRNLRAVKNVPIILVSAKREDMDKIRGLGLG 94

Query: 95  VDDVVNKPIHHREILARVA---AIYRRLKVSNNRAETG----PIRVFSDGRDPEVQGEVF 147
            +D + KP +  E++ARV    A Y RL     R E       + +  +  +  + G   
Sbjct: 95  ANDYIVKPFNPSELIARVKSQIANYERLTQGTQRKENQLQIENLTIDLNSHEVFLDGNSL 154

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            LP +E  +L +L  N     +K Q+F  I+GL D   E + V  HI+++R+K+
Sbjct: 155 VLPNKEFELLVFLAKNPNIVFSKDQLFEKIWGL-DAIGEISTVTVHINRIREKI 207


>gi|302669419|ref|YP_003829379.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302393892|gb|ADL32797.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 227

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQG-EVFP 148
            D G DD + KP    E+LARV A+ RR    S      G + +   G +    G +   
Sbjct: 95  LDLGADDYLPKPFDMGELLARVRAMLRRKADFSQPNLTCGNLTLDRAGYELSTPGHDKIR 154

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L  RE +++E LM + G+ ++       I+   D   + NVV  ++S LRKKL +     
Sbjct: 155 LSGREFQMMELLMTSPGRIISVDNFMDRIWA--DGEADVNVVWVYVSNLRKKLASLDATC 212

Query: 209 PVDSKRFLGYSI 220
            + + R LGYSI
Sbjct: 213 EIKASRGLGYSI 224


>gi|256842825|ref|ZP_05548313.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256848811|ref|ZP_05554245.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|312977655|ref|ZP_07789402.1| DNA-binding response regulator ResD [Lactobacillus crispatus
           CTV-05]
 gi|256614245|gb|EEU19446.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256714350|gb|EEU29337.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|310895394|gb|EFQ44461.1| DNA-binding response regulator ResD [Lactobacillus crispatus
           CTV-05]
          Length = 240

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 25/179 (13%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR+
Sbjct: 64  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI----------------LEYLMAN 163
            +     E  P     D +D E+  +   + +  R +                L Y MA 
Sbjct: 124 MM-----EEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQ 178

Query: 164 RGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + K+V ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 179 KPKQVFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKL-EKVGAKVIQTVWGVGYKFD 235


>gi|148560182|ref|YP_001259941.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ovis ATCC 25840]
 gi|148371439|gb|ABQ61418.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ovis ATCC 25840]
          Length = 228

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +     G DD V KP    E+LARV A+ R
Sbjct: 64  IELCRRLRQRPETGRLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         LKV +   +    RV+   ++ EV      L   E R+LEY M + G+  
Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++Q+   ++G  D  V++  V+ H+ +LRK +      D + + R  GYS
Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAADLIRTVRGAGYS 226


>gi|126699731|ref|YP_001088628.1| two-component system response regulator [Clostridium difficile 630]
 gi|254975704|ref|ZP_05272176.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255093090|ref|ZP_05322568.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255101245|ref|ZP_05330222.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
 gi|255307120|ref|ZP_05351291.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
 gi|255314833|ref|ZP_05356416.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255517507|ref|ZP_05385183.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255650618|ref|ZP_05397520.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|255656088|ref|ZP_05401497.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|260683714|ref|YP_003214999.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260687374|ref|YP_003218508.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|296450481|ref|ZP_06892237.1| response regulator [Clostridium difficile NAP08]
 gi|296879395|ref|ZP_06903389.1| response regulator [Clostridium difficile NAP07]
 gi|115251168|emb|CAJ68999.1| Two-component response regulator [Clostridium difficile]
 gi|260209877|emb|CBA63796.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260213391|emb|CBE05019.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|296260742|gb|EFH07581.1| response regulator [Clostridium difficile NAP08]
 gi|296429541|gb|EFH15394.1| response regulator [Clostridium difficile NAP07]
          Length = 222

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 11/145 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + ++IR  S VP+I ++        L  FD   DD + KP     ++ RV AI RR    
Sbjct: 64  VCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRR---- 119

Query: 123 NNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +N+       VF       +    E+ GE   L  +E  IL+ L+    + + +  +  +
Sbjct: 120 SNKTINDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDS 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           I+G +D   +  +V++HI  +RKK+
Sbjct: 180 IWG-YDYYGDTRIVDAHIKNIRKKI 203


>gi|50843487|ref|YP_056714.1| putative two-component system response regulator [Propionibacterium
           acnes KPA171202]
 gi|50841089|gb|AAT83756.1| putative two-component system response regulator [Propionibacterium
           acnes KPA171202]
 gi|315107835|gb|EFT79811.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 243

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 8/133 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
             +G DD V KP    E++AR+ A+ RR   +  + ++    G + +  + R+    GE 
Sbjct: 108 LTAGGDDYVTKPFSLEEVIARLRALLRRSGATEPKPDSMLTVGDLTLDENSREVRRAGEE 167

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L   E  +L Y M N  + ++K QI   ++  +D   + NVVE +IS LRKK+    G
Sbjct: 168 IHLTTTEFELLRYFMRNPKRVLSKAQILDRVWN-YDFRGQANVVELYISYLRKKIDR--G 224

Query: 207 FDP-VDSKRFLGY 218
             P + + R  GY
Sbjct: 225 HKPMIHTMRGAGY 237


>gi|66767745|ref|YP_242507.1| DNA-binding response regulator CreB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66573077|gb|AAY48487.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 231

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 7/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R+ S+VP+I ++        +   + G DD + KP   RE++ARV A  RR  V
Sbjct: 66  EVCRTLRSFSEVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRSV 125

Query: 122 SNNRAETG--PIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +AE G  P   F+   DG        + PL R E  +L  L+   G  +++TQ+   
Sbjct: 126 AVAQAEPGWQPHGAFAIDRDGSRIRYGETLLPLTRYEYALLAALLQRPGAILSRTQLMDR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            +    ++ +   V++HI  LR KLR   +  DP+ + R LGY+++
Sbjct: 186 GWDASADSADRT-VDTHIKTLRAKLRQAGVPADPIRTHRGLGYALE 230


>gi|2832806|emb|CAA11730.1| putative DNA binding response regulator, YvrH [Bacillus subtilis]
          Length = 369

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 7/168 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-- 114
           G    E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  
Sbjct: 192 GMSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHL 251

Query: 115 --IYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              Y+  + S+N+  T     FS    +  V GE      +  ++L+Y   +    ++K 
Sbjct: 252 KRTYQSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKD 311

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           QI+  ++G +    + N V  HI KLR+K  R+    + + + R LGY
Sbjct: 312 QIYEKVWG-YPSYGDNNTVMVHIRKLREKTERDPSNPEYIVTVRGLGY 358


>gi|83746149|ref|ZP_00943203.1| Hypothetical Protein RRSL_04185 [Ralstonia solanacearum UW551]
 gi|207722048|ref|YP_002252486.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|207741838|ref|YP_002258230.1| response regulator transcription regulator protein [Ralstonia
           solanacearum IPO1609]
 gi|300702429|ref|YP_003744029.1| transcriptional regulatory protein [Ralstonia solanacearum
           CFBP2957]
 gi|83727115|gb|EAP74239.1| Hypothetical Protein RRSL_04185 [Ralstonia solanacearum UW551]
 gi|206587222|emb|CAQ17806.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206593222|emb|CAQ60149.1| response regulator transcription regulator protein [Ralstonia
           solanacearum IPO1609]
 gi|299070090|emb|CBJ41377.1| Transcriptional regulatory protein [Ralstonia solanacearum
           CFBP2957]
          Length = 221

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 87/187 (46%), Gaps = 26/187 (13%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           DV  ++  L G+ G  VL   R +RA    VP++ ++   ++   +   D G DD V KP
Sbjct: 46  DVLLLDLGLPGQDGHAVL---RTLRARDNPVPVLILTARDAVDERVRGLDGGADDYVLKP 102

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---DPEVQ------GEVFPLPRRE 153
               E+LAR+ A+ RR           P  V S+G    DP         GE   L  RE
Sbjct: 103 FEMVELLARMRAVLRR-----RGGAASP--VLSNGMLSLDPATHEVRVGDGEAVRLSGRE 155

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             +L+ LM   G  ++++++   IYG   E V  N VE  I  LRK    KLG + + + 
Sbjct: 156 FALLQTLMLRPGAILSRSELEERIYGWGHE-VASNAVEFLIHALRK----KLGAESIKNV 210

Query: 214 RFLGYSI 220
           R +G+ +
Sbjct: 211 RGVGWMV 217


>gi|330967384|gb|EGH67644.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 229

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +  ++   NS E  E    S R D+  ++  +       +
Sbjct: 4   VLLVDDDRELTDMLSQYLTRERFTVTCTNSAEEGEVEALSGRHDIVVLDIMM--PRMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IRA SQVP++ ++        +   + G DD V KP    E++AR+ AI RR++ 
Sbjct: 62  EVLRRIRAQSQVPVVLLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRS 121

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +    G + ++   R+   QG    L   E  +LE L  + G+ V+K  +  
Sbjct: 122 VPPTDAVRDVLHAGELALWPGKREARWQGRALELTGNEFCLLEELARHAGQLVSKQNLSM 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
              G    A  +  ++ HIS +R KL  RN      + S R LGY +
Sbjct: 182 NALG-RPLARYDRSIDVHISSIRHKLGPRND-NQSWIQSVRNLGYML 226


>gi|320107368|ref|YP_004182958.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319925889|gb|ADV82964.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 249

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 16/174 (9%)

Query: 44  EDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           E + A+   ++  G    E+ R +R A + VP++ ++     +  L+ F +G DD +NKP
Sbjct: 49  EKIGAVLLDVMLPGLDGFEIVRALRDAQNYVPVLMLTARSRPEDVLEGFSAGADDYLNKP 108

Query: 103 IHHREILARVAAIYRRLK----VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPL 149
                ++AR+  + RR++    V+N   E         TG +  F D  + EV G+V  L
Sbjct: 109 FQLAILMARLTGLLRRMRWQQAVTNAPDEEIQDIYTFGTGKVIRF-DALELEVNGKVTRL 167

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              E  ++ YL+   GK V++ +I   ++ +  E  +   +++ I +LR+ L +
Sbjct: 168 TLMEAELMRYLVEREGKIVSRKEILEEVWRV-REDTDTRAIDNFIVRLRRYLED 220


>gi|289424048|ref|ZP_06425834.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
 gi|289155473|gb|EFD04152.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
          Length = 231

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 16/131 (12%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAETGPIRVFSDGR---DPEV 142
           F SG DD + KP   +E+L RV A+ RR+K       NN   T P  +  + R     EV
Sbjct: 93  FQSGADDYIVKPFSIKELLMRVQALIRRVKKDSDSKKNNMINTPPFLLDPNKRKLYKNEV 152

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           + ++ P    E  I++YLM N  + +++ QI   ++G  D   +  +V+ +I    +++R
Sbjct: 153 EVDLTPT---EFSIVKYLMTNDSQSLSRDQILEEVWGSAD-LYDYKIVDVNI----RRIR 204

Query: 203 NKLGFDPVDSK 213
           NK+  DP   K
Sbjct: 205 NKIEDDPSKPK 215


>gi|225568375|ref|ZP_03777400.1| hypothetical protein CLOHYLEM_04452 [Clostridium hylemonae DSM
           15053]
 gi|225162823|gb|EEG75442.1| hypothetical protein CLOHYLEM_04452 [Clostridium hylemonae DSM
           15053]
          Length = 232

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 14/170 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +IIR  S+VP+I ++        +   D G DD + KP     +L+R+ A+ RR   
Sbjct: 62  ELCKIIRRTSKVPIIFLTAADEETDIIMGLDIGGDDYITKPFKLAILLSRINALLRR--- 118

Query: 122 SNNRAETGPIRVFSDG-RDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIF 174
           S+N  ET    + S+G +   ++GEV+       L   E ++L   M N    ++  QI 
Sbjct: 119 SDNFNET-TTELNSNGIKVKLLKGEVYKNESQLDLTASEYKLLCLFMENPDIVLSPEQIL 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
           S ++   ++ ++ + +  +I +LR K+ +  G    + + R +GY   WN
Sbjct: 178 SKLWDCDEKYIDSSTLTVYIRRLRTKIEDTPGQPQKILTVRGMGYK--WN 225


>gi|148378611|ref|YP_001253152.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931129|ref|YP_001382998.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935657|ref|YP_001386545.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153941463|ref|YP_001389974.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|148288095|emb|CAL82163.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927173|gb|ABS32673.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931571|gb|ABS37070.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152937359|gb|ABS42857.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318058|gb|ADF98435.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
 gi|322804930|emb|CBZ02489.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 16/208 (7%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N  +    EE L+   RE+V+ +   ++      LE+ +  R    +P++ +S    
Sbjct: 25  EGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEVCKRAREKYSIPILMLSAKVE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFSD 136
               ++   +G DD V KP +H E+  R+ A+ RR       +++S+N      + +   
Sbjct: 85  DMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFLNTKMQISDNIIRIESMVIDKK 144

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEENVVESHI 194
                +      L  RE  IL  L  NRG   +  +IF  ++    F      N V  H+
Sbjct: 145 QHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFEKVWKERYFQ---SNNTVMVHM 201

Query: 195 SKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           S+LR K+   + G   + +   +GY I+
Sbjct: 202 SRLRDKIEQHMEGSKVIHTVWGVGYKIE 229


>gi|16131939|ref|NP_418537.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. MG1655]
 gi|89110834|ref|AP_004614.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. W3110]
 gi|170083565|ref|YP_001732885.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. DH10B]
 gi|238903221|ref|YP_002929017.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli BW2952]
 gi|34395951|sp|P30843|BASR_ECOLI RecName: Full=Transcriptional regulatory protein BasR
 gi|536957|gb|AAA97012.1| basR [Escherichia coli str. K-12 substr. MG1655]
 gi|1790552|gb|AAC77074.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. MG1655]
 gi|85676865|dbj|BAE78115.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K12 substr. W3110]
 gi|169891400|gb|ACB05107.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. DH10B]
 gi|238860857|gb|ACR62855.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli BW2952]
 gi|260451058|gb|ACX41480.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|315138669|dbj|BAJ45828.1| DNA-binding transcriptional regulator BasR [Escherichia coli DH1]
 gi|323380500|gb|ADX52768.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
          Length = 222

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR---H 119

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY
Sbjct: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 180 N-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219


>gi|332669311|ref|YP_004452319.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338349|gb|AEE44932.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 7/117 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNRAETGPIRVFSDGRDPEVQG 144
            + G DD +NKP   +E+LARV A+ RR         +++   +G +RV    R   + G
Sbjct: 95  LEEGADDYLNKPFDPQELLARVRAVLRRAVPGQPSLTASDVLVSGGLRVDRAARRATLDG 154

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
               L  +   +L+YLM + G+ + + ++ +A++G F+  V    V+  ++++R+ L
Sbjct: 155 RPVALTPKASLLLDYLMTHPGELLTRERLLAALWG-FESMVTTRAVDHRVAEIRRVL 210


>gi|313832563|gb|EFS70277.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
          Length = 243

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 8/133 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146
             +G DD V KP    E++AR+ A  RR   +  + ++    G + +  D R+    GE 
Sbjct: 108 LTAGGDDYVTKPFSLEEVIARLRAPLRRSGATEPKPDSMLTVGDLTLDEDSREVRRAGEE 167

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L   E  +L Y M N  + ++K QI   ++  +D   + NVVE +IS LRKK+    G
Sbjct: 168 IHLTTTEFELLRYFMRNPKRVLSKAQILDRVWN-YDFRGQANVVELYISYLRKKIDR--G 224

Query: 207 FDP-VDSKRFLGY 218
             P + + R  GY
Sbjct: 225 HKPMIHTMRGAGY 237


>gi|316935886|ref|YP_004110868.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603600|gb|ADU46135.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 12/150 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   +L R IR  S VP++ ++     ++ ++    G DD V KP   RE+L R+  I 
Sbjct: 74  GETGFDLARSIRETSDVPIVMLTARHEAESRIEGLQIGADDYVAKPFEPRELLLRIGNIL 133

Query: 117 RRLK-VSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171
           +R       +AET   GP  VF   R    QG E+  L  RER +L  L A  G+ V + 
Sbjct: 134 KRTAPAPAAKAETVAFGPY-VFHIERGELRQGDEIVHLTDRERDMLRMLAAAPGETVPRG 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +  A          E  V+  I++LR+K+
Sbjct: 193 DLSGA------GNANERAVDVQINRLRRKI 216


>gi|227820289|ref|YP_002824260.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227339288|gb|ACP23507.1| probable two-component response regulator protein [Sinorhizobium
           fredii NGR234]
          Length = 225

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +RA  ++  ++ ++   S +  +   D G DD + KP    E  ARV  + RR 
Sbjct: 60  LDVLRAMRARQNRAAVLILTARGSPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQ 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + ++    G + +    R     G    +P RE  +LE L    GK VAK  I  ++ 
Sbjct: 120 AGLRSSIVSYGNVSLDLTARSFSAGGVPIEIPARELGLLELLFMRAGKVVAKDAIVQSLT 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL D+ +  N +E ++S+LRK+L    G   V + R +GY +D
Sbjct: 180 GL-DDDLSPNAIEQYVSRLRKRL-APYGL-TVRTARGIGYYLD 219


>gi|225626512|ref|ZP_03784551.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ceti str. Cudo]
 gi|225618169|gb|EEH15212.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ceti str. Cudo]
          Length = 255

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +     G DD V KP    E+LARV A+ R
Sbjct: 91  IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 150

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         LKV +   +    RV+   ++ EV      L   E R+LEY M + G+  
Sbjct: 151 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 203

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++Q+   ++G  D  V++  V+ H+ +LRK +      D + + R  GYS
Sbjct: 204 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYS 253


>gi|218551702|ref|YP_002385494.1| DNA-binding response regulator CreB [Escherichia fergusonii ATCC
           35469]
 gi|218359244|emb|CAQ91910.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia fergusonii ATCC 35469]
 gi|324112609|gb|EGC06586.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325495931|gb|EGC93790.1| DNA-binding response regulator CreB [Escherichia fergusonii ECD227]
          Length = 229

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 46/209 (22%)

Query: 50  EAFLIGKGEKVLELPRIIRAHSQVPLIGISD------------------YPSLQTT---- 87
           E FL+   E+   LP + +AH QVP + I D                  +P+L       
Sbjct: 26  EGFLVEAFER--GLPALEKAHFQVPDVAILDVGLPDISGFELCRQLLERHPALPILFLTA 83

Query: 88  -------LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-- 138
                  L   + G DD V KP   RE+ ARV  + RR+K       + P  V   G+  
Sbjct: 84  RSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK-----KFSAPSPVIRCGQFE 138

Query: 139 --DPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
             +P  Q         L R E  +L+ L+ + G+  ++ Q+   ++    +  +   V++
Sbjct: 139 LNEPAAQISWCDTPLQLTRYEFLLLKTLIMSPGRVWSRQQLMDKVWADAQDTFDRT-VDT 197

Query: 193 HISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           HI  LR KLR       P+++ R +GYS+
Sbjct: 198 HIKTLRAKLRAINPALSPINTHRGMGYSL 226


>gi|161506705|ref|YP_001576655.1| putative response regulator [Lactobacillus helveticus DPC 4571]
 gi|160347694|gb|ABX26368.1| putative response regulator [Lactobacillus helveticus DPC 4571]
          Length = 238

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121

Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +           ++   + G + +  D    E  G+   L  RE  +L YL  + G+ + 
Sbjct: 122 IVKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGQKIELTHREFELLYYLAQHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+  N +    + ++R +GY +
Sbjct: 182 REHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYV 232


>gi|197117560|ref|YP_002137987.1| winged-helix transcriptional response regulator KdpE [Geobacter
           bemidjiensis Bem]
 gi|197086920|gb|ACH38191.1| winged-helix transcriptional response regulator KdpE [Geobacter
           bemidjiensis Bem]
          Length = 235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ R IR  SQVP+I +S        +   D+G DD + KP    E+LAR+ A  RR  
Sbjct: 69  IEVIRRIREWSQVPIIVLSVREREDDKVAALDAGADDYLTKPFGVGELLARMRASLRRSA 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++S     +G + V  + R   V+G    L   E  +L  L+ +  K +  +QI   I+
Sbjct: 129 VQLSEPVFSSGDLTVDLNLRRVTVEGAEVQLTPTEYDLLRLLITHADKVITHSQILKQIW 188

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G+  +  +  V+   IS LRKK+
Sbjct: 189 GVAYQD-QPQVLRVTISNLRKKV 210


>gi|56540661|gb|AAV92784.1| PmrA [Salmonella enterica]
 gi|56540663|gb|AAV92785.1| PmrA [Salmonella enterica]
          Length = 222

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRR--- 118

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            NN+ E+    G + +          G+   L  +E  +L  LM   G  V +  +++ I
Sbjct: 119 HNNQGESELTVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|88857640|ref|ZP_01132283.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
 gi|88820837|gb|EAR30649.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
          Length = 246

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 11/144 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RA 126
           RA  Q P++ ++        +   + G DD V KP+  R +L+R+ A+ RR    N   A
Sbjct: 78  RAFYQGPILMMTARDDEMDEILGLELGADDYVTKPVKPRVLLSRIKALLRRSNTPNQPNA 137

Query: 127 ET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ET         G + + +  R  ++ G+   +   E  +L YL  + G+ V++T++F+ +
Sbjct: 138 ETNLNEGLIELGSLYIDAPSRAVKLHGQTIAISSNEFDLLWYLAQSAGQVVSRTELFNQL 197

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
            G   +  + + ++  IS+LRKKL
Sbjct: 198 RGSEYDGFDRS-IDIFISRLRKKL 220


>gi|119716281|ref|YP_923246.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536942|gb|ABL81559.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 250

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 14/124 (11%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-------------GPIRVFSDG 137
            ++G DD + KP   RE+ ARV A++RR +                     GP+RV  +G
Sbjct: 103 LETGADDFIAKPFSARELKARVNAMFRRPRTGGGAQRPDAPAEDPHELLVHGPLRVDVEG 162

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R     G+   L R E  +L  LM    +  ++  +  +++G  D A + ++VE H+  L
Sbjct: 163 RRAFRDGQELVLTRTEFDLLTELMRAPSRVWSREALLRSVWGT-DWASDTHLVEVHVGNL 221

Query: 198 RKKL 201
           R+KL
Sbjct: 222 RRKL 225


>gi|319938205|ref|ZP_08012603.1| winged helix family Two component transcriptional regulator
           [Coprobacillus sp. 29_1]
 gi|319806726|gb|EFW03375.1| winged helix family Two component transcriptional regulator
           [Coprobacillus sp. 29_1]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 30/208 (14%)

Query: 15  YIALFGDDGVSL-----EGFNSLEFEEWLQSSAREDV-----SAIEAFL--IGKGEKV-L 61
           Y  L  DD V L     E FN  + +     +AR+ +     + ++  L  I  GE    
Sbjct: 3   YDCLIVDDEVPLAQSTTEYFNLFDVKTVAVFNARDCIEFLKNNTVDLILLDINLGETSGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +R  +Q+P++ IS   S    L     G DD + KP     +LA+V       KV
Sbjct: 63  DLCQALRKTTQIPILFISARQSDDDILLALHIGGDDYIRKPYSLHILLAKV-------KV 115

Query: 122 SNNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + NR  T    ++ +         +   + G+   L   E R+L YL+ NR K + K +I
Sbjct: 116 TLNRYGTKTSHIYENRHLYIDFSAQKVSIHGQPIKLKTLEYRLLCYLIENRNKVLTKEEI 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
           F+ ++   D    +  +  HI  LR+K+
Sbjct: 176 FNNVWR--DHFTSDGTLNVHIRHLREKI 201


>gi|229823947|ref|ZP_04450016.1| hypothetical protein GCWU000282_01251 [Catonella morbi ATCC 51271]
 gi|229786301|gb|EEP22415.1| hypothetical protein GCWU000282_01251 [Catonella morbi ATCC 51271]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP++ +S +      +   + G DD + KP     ++A++  + RR   L    
Sbjct: 67  IRKVSNVPILFLSSHDQATEIVMSINMGADDYITKPFDSMVLVAKIQGLMRRAYELTAET 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             +E     +         QG +  L + E +IL  L A+ G  V++ Q+   ++   + 
Sbjct: 127 EFSEYHGAMLNLKTTQLHYQGNLVDLTKNEFQILRVLFASAGHYVSRDQLMQELWS-SEV 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      D + +K+ +GY +
Sbjct: 186 FIDDNTLSVNMARLRKKLEGVGLEDFIHTKKGIGYGL 222


>gi|284037811|ref|YP_003387741.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817104|gb|ADB38942.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 74/140 (52%), Gaps = 6/140 (4%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VS 122
           I +  ++ P++ ++   S+   L  F++G DD + KP   RE++AR+ A+ +R     + 
Sbjct: 71  IRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSSDAGMQ 130

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
            N  +   + +  + +      +   L  +E  +L+YLM NRG+ V++  I   ++ + F
Sbjct: 131 TNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKVWDIHF 190

Query: 182 DEAVEENVVESHISKLRKKL 201
           D     NV++ +++ LRKK+
Sbjct: 191 DTGT--NVIDVYVNFLRKKI 208


>gi|229175929|ref|ZP_04303426.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228607523|gb|EEK64848.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 202

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R  ++ +P++ ++    +   L     G DD V KP ++ E++ R+  + RR+K
Sbjct: 39  ELLRLFREKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMTRRVK 98

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+     G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 99  KAEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 158

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 159 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 201


>gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 22/163 (13%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVA 113
           GE+VL+  R+ R  + V ++   D     T  D     + G DD V KP   RE++AR+ 
Sbjct: 60  GEEVLKRIRMDRNDTPVIVLTAKD-----TEFDKVFGLEMGADDYVPKPFSPREVIARIN 114

Query: 114 AIYRRLKVSNNRAE-------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
           A+ RR + S   ++             TGP  +        V  +   L  +E  +++YL
Sbjct: 115 AVLRRYEKSEPSSQQNAAPVKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYL 174

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + +  + +++ Q+   ++G FD + +  +V+  I+ LR+K+ +
Sbjct: 175 VGHENQVLSRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIES 216


>gi|223042853|ref|ZP_03612901.1| two-component response regulator [Staphylococcus capitis SK14]
 gi|222443707|gb|EEE49804.1| two-component response regulator [Staphylococcus capitis SK14]
          Length = 224

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+    V
Sbjct: 64  RKMRQESNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFGV 123

Query: 122 SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R       V    +D  +   +   L + E  ILE L+  + + V +  + +A++  
Sbjct: 124 EEKRTLNWQDTVVDLSKDSIQKADKTIFLSKTEMIILEMLINKKNQIVTRDTLITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DEA V +N +  ++++LRKKL      D +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLAEIGMDDAIETKVGKGY 220


>gi|153811679|ref|ZP_01964347.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174]
 gi|149832420|gb|EDM87505.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174]
          Length = 233

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 69/151 (45%), Gaps = 22/151 (14%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I IS        ++  D+G DD + KP    E+LAR+    RRL V     
Sbjct: 69  IRTWSNMPIIVISARSEDSDKIEALDAGADDYITKPFSVEELLARIRVTQRRLAV----I 124

Query: 127 ETGPIR---VFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +TG I+   VF +G            ++GE   L   E ++L  L  N GK +  T I  
Sbjct: 125 QTGEIQKTAVFINGELKIDYTAGCTYMRGEELHLTPIEYKLLCLLYCNVGKVLTHTYITQ 184

Query: 176 AIYGLFDEAVEENVVES---HISKLRKKLRN 203
            I+G       EN V S    ++ LRKKL +
Sbjct: 185 QIWG----RSSENDVASLRVFMATLRKKLES 211


>gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 9/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVS----NNRAET 128
           P++ ++   +++  +     G DD V KP    E++ R+  I RR  KVS    + R + 
Sbjct: 81  PVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGKVSVEEQSARIKF 140

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             I +  D R+    G++  L   E  +L Y M N G  ++K +I   ++  +D   E  
Sbjct: 141 ADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDHVWN-YDFGGEVG 199

Query: 189 VVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           VVES++S LR+K+    G  P + + R +GY
Sbjct: 200 VVESYVSYLRRKVDT--GETPLIHTLRGVGY 228


>gi|148657917|ref|YP_001278122.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570027|gb|ABQ92172.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVS 122
           RI+R  S+VP++ ++        +   + G DD V KP    E+LARV AI RR   ++S
Sbjct: 67  RILRQESEVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRSDRRIS 126

Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             R   + G IR+ +  R          L ++E  +L  LM NRG  +++  +   ++G 
Sbjct: 127 ALREVLDAGAIRLDTGSRRAWRDDVELNLSQKEFDLLACLMRNRGIALSRDVLLERVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +D   +   V+ HI  LR+K+    G    + + R +GY
Sbjct: 186 YDFLGDSRTVDVHIRWLREKVEPDPGKPTYIQTVRGIGY 224


>gi|24371659|ref|NP_715701.1| transcriptional regulatory protein KdpE [Shewanella oneidensis
           MR-1]
 gi|24345425|gb|AAN53146.1|AE015457_8 transcriptional regulatory protein KdpE [Shewanella oneidensis
           MR-1]
          Length = 229

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +EL  ++R   + P++ ++     +  +   ++G +D ++KP   RE++ R+  + R L 
Sbjct: 62  IELLHMLRQQDKTPVLVLTARDQEEEKIRLLEAGANDYLSKPFGIRELIVRIKVLMRDLV 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              ++ +  + GP+++        +  +   L ++E  +L +LM++ G+ V ++++   I
Sbjct: 122 DTSIAADVLQFGPLKLQKSSHQCWLNQQEIALTKKEFALLAHLMSHPGQLVKQSELLRRI 181

Query: 178 YGLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G   E  +E  + +   +S+LRKKL +      + ++  LGY +
Sbjct: 182 WG---ETHQEDGHYLRILVSQLRKKLNDSDEQQLIKTEPGLGYRL 223


>gi|55981331|ref|YP_144628.1| response regulator [Thermus thermophilus HB8]
 gi|55772744|dbj|BAD71185.1| response regulator [Thermus thermophilus HB8]
          Length = 227

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 2/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P++ ++   ++   +     G DD + KP H  E+LAR+    R  + 
Sbjct: 62  EVARRIRATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAELLARIQVQLRHKEG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S   A  G + ++   R    +     L  +E  +L  LM+  G+   + +I   ++G  
Sbjct: 122 SEVLA-VGQLELYPGKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWG-R 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               + NV++ H++ LR KLR    +  + + R +GY++
Sbjct: 180 PLGKDSNVLDVHMANLRAKLREAGAYGYLRTVRGVGYAV 218


>gi|88800114|ref|ZP_01115683.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
 gi|88777095|gb|EAR08301.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
          Length = 229

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR + +    
Sbjct: 68  VRQFSNVPIIMVTAKVDEIDRLLGLEQGADDYICKPFSAREVVARVRAVLRRQEPTYYER 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               ++   D            L   E  +L+ L+++ GK  +++++ + IY      V 
Sbjct: 128 AQSALQFNEDTLSVSTASTQIELTVVEFELLKALVSHPGKIFSRSRLAAIIYSDH-RIVS 186

Query: 187 ENVVESHISKLRKKL 201
           E  ++SHI K+RKKL
Sbjct: 187 ERTIDSHIKKIRKKL 201


>gi|103487528|ref|YP_617089.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98977605|gb|ABF53756.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 236

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 17/172 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R +R  SQ+P+I ++              G DD + KP   R ++AR+ AI RR++
Sbjct: 62  LELLRRLREKSQLPVIFLTSKDDEIDEALGLAMGADDYIAKPFSQRLVIARIRAILRRVE 121

Query: 121 VSNNRAETG--------PIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKR 167
           +  NRA           PI       DP        G+   L   E  ILE L +  G  
Sbjct: 122 L--NRAPPSEDDEPVAEPITRGRLTMDPARHKVSWDGKEVTLTVTEFLILETLASRPGIV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
            ++ Q+  A Y   D  +++  ++SHI +LR+K R    GFD + +    GY
Sbjct: 180 RSRNQLMDAAYQ-DDVYIDDRTIDSHIKRLRRKFREVDPGFDAIATLYGAGY 230


>gi|306826127|ref|ZP_07459462.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431603|gb|EFM34584.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 217

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 16/224 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGK 56
            +++DD  ++++G  A   ++G    ++ +G  +LE F E+        +  +   L+  
Sbjct: 3   ILVVDDEDMIREGVAAFLREEGYHVILAKDGQEALEKFHEF-------PIHLMVLDLMLP 55

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                E+ + I  +  +P+I +S     +T +  FD   DD V KP     ++ R+ A+ 
Sbjct: 56  KRSGFEVLKEINGNHDIPVIVLSALGDEETQMQVFDLYADDHVTKPFSLVLLVKRIQALL 115

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR  V  +      + V        V+ E   +  +E  +L+ L+ ++ + +++ QI  +
Sbjct: 116 RRYYVVEDIWHYQDVTVDFTSYQARVKNEEVAIKPKELLVLKCLIQHKNQVLSREQILES 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   F +   + VV+ +I  LRK    KL  D + + +  GY I
Sbjct: 176 ISNDFADLPLDRVVDVYIRNLRK----KLDLDCIVTVKNAGYKI 215


>gi|289628311|ref|ZP_06461265.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647904|ref|ZP_06479247.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488175|ref|ZP_07006212.1| Copper-sensing two-component system response regulator CpxR
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157454|gb|EFH98537.1| Copper-sensing two-component system response regulator CpxR
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330869383|gb|EGH04092.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 229

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 100/225 (44%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +  ++   NS E  E    S R D+  ++  +       +
Sbjct: 4   VLLVDDDRELTEMLSQYLTRESFTVTCTNSAEEGEIEALSGRHDIVVLDIMM--PRMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IRA SQVP+I ++        +   + G DD V KP    E++AR+ AI RR++ 
Sbjct: 62  EVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRA 121

Query: 121 ---VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              V   R   + G + ++   R+   QG    L   E  +LE L  + G+ V+K  +  
Sbjct: 122 VPVVETVREVIQAGDLTLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSM 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGY 218
              G    A  +  ++ HIS +R KL  RN      + S R LGY
Sbjct: 182 NALG-RPLARYDRSIDVHISSIRHKLGPRND-NQSWIQSVRNLGY 224


>gi|284066971|gb|ADB77766.1| AdeR [Acinetobacter genomosp. 13]
          Length = 247

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR + +N   
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137

Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKIYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +       + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGILQMFINVRGVGYRLD 238


>gi|260102098|ref|ZP_05752335.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|260084098|gb|EEW68218.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
          Length = 238

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 13/172 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121

Query: 121 V-----SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +     ++N+ +T      G + +  D    E  G    L  RE  +L YL  + G+ + 
Sbjct: 122 IVKKAEADNQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+  N +    + ++R +GY +
Sbjct: 182 REHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYV 232


>gi|256158647|ref|ZP_05456530.1| Transcriptional regulatory protein [Brucella ceti M490/95/1]
 gi|256254051|ref|ZP_05459587.1| Transcriptional regulatory protein [Brucella ceti B1/94]
 gi|261221191|ref|ZP_05935472.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|265997152|ref|ZP_06109709.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|260919775|gb|EEX86428.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|262551620|gb|EEZ07610.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R   +   +P+I ++        +     G DD V KP    E+LARV A+ R
Sbjct: 64  IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123

Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R         LKV +   +    RV+   ++ EV      L   E R+LEY M + G+  
Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++Q+   ++G  D  V++  V+ H+ +LRK +      D + + R  GYS
Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYS 226


>gi|229127391|ref|ZP_04256386.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|229144600|ref|ZP_04273002.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229150217|ref|ZP_04278439.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|296502577|ref|YP_003664277.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228633336|gb|EEK89943.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228638840|gb|EEK95268.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228656073|gb|EEL11916.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|296323629|gb|ADH06557.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 71  LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +     +   LP +E  +L  L A  G+  ++ Q+   I+G +D   
Sbjct: 131 IQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWG-YDFEG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 190 NERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLE 225


>gi|261366508|ref|ZP_05979391.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282571780|gb|EFB77315.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 233

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 14/142 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  + VP+I ++        L     G DD ++KP   +E+L RV A+ RR        
Sbjct: 75  LRTFTDVPVIFLTAKDEAADKLAGLGLGADDYISKPFMPQELLLRVYAVLRR-----TYK 129

Query: 127 ETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E  P+ V      D    EV   G++ PL  +E  +LE L  N GK V    +  A++G 
Sbjct: 130 EDSPLVVLDGCTIDFSRAEVNKGGKIIPLTAKEHTLLETLARNEGKIVTVDALCEALWG- 188

Query: 181 FDEAVE-ENVVESHISKLRKKL 201
            D     EN + +H+ ++R+K+
Sbjct: 189 -DNPFGYENSLNAHVRRVREKI 209


>gi|171058342|ref|YP_001790691.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775787|gb|ACB33926.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 245

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 10/171 (5%)

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           GE  + L R  RA +   ++ +I ++   S Q  +   D+G DD ++KP    E+LAR+ 
Sbjct: 57  GESGVSLARRWRADARTRELSIIMLTARSSEQDMVQGLDAGADDYLSKPFSTAELLARIR 116

Query: 114 AIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR   +      E GP+R+         Q +   L   E R+L +LM    +  ++ 
Sbjct: 117 AVLRRKLPEALEAAVEVGPLRLDPAAHRVFHQHDEVTLGPTEFRLLRFLMTYPERVHSRG 176

Query: 172 QIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+   ++G  +F   +EE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 177 QLLDRVWGDHVF---IEERTVDVHIKRLRGVLAPYGCAELIETVRGAGYRL 224


>gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 239

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 24/210 (11%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-V 73
           Y  +   DG   EG   LE   W          A+   L+  G   LE+ R  RA ++  
Sbjct: 29  YEVVHSADGT--EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMARYT 77

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPI 131
           P+I  S   S    +   + G DD + KP    E++ARV A+ RR+     ++R + G +
Sbjct: 78  PIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRIDAGTL 137

Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            V     DP      V G    L  RE  +L +   + GK  ++  + +A++G   E   
Sbjct: 138 DVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGY- 196

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           E+ V +HI++LR K+      DP +  R L
Sbjct: 197 EHTVNTHINRLRAKVEA----DPAEPVRIL 222


>gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 9/205 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++   + + EE L  + +++   I   ++       E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDC--AYDGEEALVFAKQKEYDVILLDVMLPRMNGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIREFSNMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTRK 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + AE     VF D +       VF       L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 ASEAEASKTIVFGDLKIDSESRRVFISEKEINLTAKEFDVLELLVLNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G +D   +   V+ HI +LR+K+
Sbjct: 184 VWG-YDYPGDVRTVDVHIRRLREKI 207


>gi|270208660|ref|YP_003329431.1| putative response regulator protein [Sinorhizobium meliloti]
 gi|76880934|gb|ABA56104.1| putative response regulator protein [Sinorhizobium meliloti]
          Length = 246

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 6/119 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDG--VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +++DD + ++      F ++G  VSL G +  E  E L    ++ V  I   L+  GE 
Sbjct: 11  ILVVDDDSRIRQMLSRYFEEEGYRVSLAG-DGQEMRECLD---KQPVDVILLDLMLPGED 66

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L L R IRA S VP+I ++    +   +   + G DD + KP H RE+LARV  + RR
Sbjct: 67  GLTLARDIRARSDVPIIMLTGRSDVVDRVVGLEVGADDYIAKPFHLREVLARVRGVLRR 125


>gi|21673035|ref|NP_661100.1| DNA-binding response regulator [Chlorobium tepidum TLS]
 gi|21646102|gb|AAM71442.1| DNA-binding response regulator [Chlorobium tepidum TLS]
          Length = 220

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 14/156 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           S +P+I I+    L   +   DSG DD + KP    E+LAR+ A+ RR         +G 
Sbjct: 71  SSIPVIIITARDGLGERIAGLDSGADDYLVKPFDLDELLARLRAVIRR----QGGQASGL 126

Query: 131 IRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           I       DP         E   L  RE  +L  L+   G+ ++++ +   +YG +DE V
Sbjct: 127 IGNGQITLDPATHTAFCGEERAVLSSREFAVLHALLLQPGRILSRSALEERVYG-WDEEV 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E N ++  I +LR+    KLG   + + R  G+ ++
Sbjct: 186 ESNAIDYLIHQLRR----KLGATSIKNIRGAGWMVE 217


>gi|297579859|ref|ZP_06941786.1| DNA-binding response regulator [Vibrio cholerae RC385]
 gi|297535505|gb|EFH74339.1| DNA-binding response regulator [Vibrio cholerae RC385]
          Length = 218

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    +   +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 63  LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 119

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 120 SGSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++E   +N +E HI  LRKKL + L    V + R +GY I+
Sbjct: 180 G-WEEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 217


>gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 224

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I + +  VP++ ++   S++  +   D+G +D + KP    E+LAR+  + RR + S
Sbjct: 63  LREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPEKS 122

Query: 123 NNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +               +VF DG++ ++ G+ F L       L Y++ N+G  +++ ++ 
Sbjct: 123 EDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFAL-------LRYMIQNKGIVLSREKLE 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +D A   NV++ +I  LRKK+        + + R  GY +
Sbjct: 176 QHLWN-YDYAGGSNVIDVYIRYLRKKIDEPFEEKLIHTVRGAGYVL 220


>gi|296447620|ref|ZP_06889540.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296254885|gb|EFH01992.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 221

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  + R    +P++ ++   ++   +   +SG DD + KP    E++AR+ A+ RR    
Sbjct: 65  LAELRRQGDAIPVLILTARDAVADRVKGLNSGADDYLVKPFDLEELIARIHALARRGAGR 124

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              A E GPIR+     +  + GE   L  RE  +L+ L+   G  ++++++   +YG +
Sbjct: 125 AAAAIEYGPIRLDPVTHEAWLHGESLELSPREFALLQALLEPPGAVLSRSRLEERLYG-W 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  V  N V+ H+  LRK    KLG + + + R +G+ +
Sbjct: 184 DREVASNAVDVHLHNLRK----KLGGETIVNVRGVGFRV 218


>gi|293381660|ref|ZP_06627641.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|290921707|gb|EFD98728.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
          Length = 242

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 25/179 (13%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR+
Sbjct: 66  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI----------------LEYLMAN 163
            +     E  P     D +D E+  +   + +  R +                L Y MA 
Sbjct: 126 MM-----EEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQ 180

Query: 164 RGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + K+V ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 181 KPKQVFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKL-EKVGAKVIQTVWGVGYKFD 237


>gi|271970052|ref|YP_003344248.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513227|gb|ACZ91505.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 234

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 96  DDVVNKPIHHREILARVAAIYRRLKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           DD V KP    E+LAR+ A+ RR +       R + G + +  +       G    L   
Sbjct: 103 DDYVTKPFSLEEVLARIRAVLRRTRGDLDLPTRLQVGDLELDEEAHQVWRSGTPVRLSPT 162

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           E ++L Y M N G+ ++K QI   ++  +D   +  VVES++S LR+K+
Sbjct: 163 EFKLLHYFMVNTGRVLSKAQILDHVWN-YDFGGDAGVVESYVSYLRRKV 210


>gi|227877262|ref|ZP_03995335.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|227863118|gb|EEJ70564.1| response regulator [Lactobacillus crispatus JV-V01]
          Length = 234

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 25/179 (13%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR+
Sbjct: 58  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 117

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI----------------LEYLMAN 163
            +     E  P     D +D E+  +   + +  R +                L Y MA 
Sbjct: 118 MM-----EEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQ 172

Query: 164 RGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + K+V ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 173 KPKQVFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKL-EKVGAKVIQTVWGVGYKFD 229


>gi|226325933|ref|ZP_03801451.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758]
 gi|225205475|gb|EEG87829.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758]
          Length = 232

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 11/144 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           IR +  +P+I +S        +   + G DD + KP +  E++ARV +  RR        
Sbjct: 67  IRENMSLPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLRRYTQLGSTA 126

Query: 122 -SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S+N++E  TG + +  D ++  V GE   L   E  IL  L+ N+GK  +  QI+  I+
Sbjct: 127 RSDNQSEFRTGGLVIRDDLKEVTVDGEKVKLTPIEYNILLLLVKNQGKVFSINQIYENIW 186

Query: 179 GLFDEAV-EENVVESHISKLRKKL 201
              +EA+  +N V  HI  +R+K+
Sbjct: 187 N--EEAIGADNTVAVHIRHIREKI 208


>gi|167822911|ref|ZP_02454382.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei 9]
          Length = 241

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 63  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 121

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q
Sbjct: 122 -----GAGGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQ 176

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 177 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 222


>gi|161505227|ref|YP_001572339.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866574|gb|ABX23197.1| hypothetical protein SARI_03365 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 222

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRR--- 118

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            NN+ E+    G + +        + G+   L  +E  +L  LM   G  V +  +++ I
Sbjct: 119 HNNQGESELAVGNLTLNMGRHQAWMDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|153938117|ref|YP_001390694.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934013|gb|ABS39511.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318768|gb|ADF99145.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 223

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+   +R+ S + P+I ++    ++      D+G DD + KP    E+ AR+ AI RR 
Sbjct: 60  IEILNYLRSESIETPVIIVTARDEVEQLAFGLDNGADDYITKPFKLLELRARIHAIIRRF 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +N     G  ++    R  E++ +   L  +E  ILEY+       V+  +I   IY
Sbjct: 120 HGRTNPIINIGNFQLNPITRTVEIENKPVALASKEFDILEYICYRHPAVVSSEEIAEHIY 179

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              DE  +   +V+  HI++L+KKL N  G + + + R  GY
Sbjct: 180 ---DENFDPFSSVLRVHIARLKKKLSNASGKEILINIRGKGY 218


>gi|124022336|ref|YP_001016643.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123962622|gb|ABM77378.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 10/163 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--- 121
           RI  +  + P++ ++ +  +   +   D+GVDD + KP    E++AR+ A+ RR +    
Sbjct: 74  RIRSSGIKTPILMLTGHDDVTDRVKALDAGVDDYLTKPFSIEELMARLRAMQRRAEQFSG 133

Query: 122 -SNNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S N  +   I+V      +  RD         L  +E  +L +LM   GK   +  I  
Sbjct: 134 DSGNEHQPETIQVADLKMNTSTRDVTRDNRTIQLSVKEYELLHFLMVGAGKVHERDAIMK 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           A++G  D   ++N+++ +I  LR+K+  K     + + R +G+
Sbjct: 194 AVWG-EDFFGDDNLLDVYIRYLRQKIEQKGAATMIHTVRGVGF 235


>gi|71734983|ref|YP_275297.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485460|ref|ZP_05639501.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|71555536|gb|AAZ34747.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323806|gb|EFW79890.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327945|gb|EFW83950.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881161|gb|EGH15310.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889640|gb|EGH22301.1| DNA-binding response regulator [Pseudomonas syringae pv. mori str.
           301020]
 gi|330989766|gb|EGH87869.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010708|gb|EGH90764.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 222

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 24/227 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++     +  + +   A E    I   L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLA--DGRDAVYQGATEPYDLIVLDLGLPGMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ +  R      P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+ +    + G   V  DG D ++    F       R+L Y M + G+ ++K+
Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEF-------RLLRYFMLHPGQILSKS 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   +Y   +E  + NV+E H++ LR+    KLG   V+++R  GY
Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215


>gi|71906718|ref|YP_284305.1| two component transcriptional regulator [Dechloromonas aromatica
           RCB]
 gi|71846339|gb|AAZ45835.1| two component transcriptional regulator, winged helix family
           [Dechloromonas aromatica RCB]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 9/163 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L R +R  S +P+I +S   +    +   D+G DD + KP    E+LARV A  RR  
Sbjct: 65  IDLIRDVRTWSDIPIIVLSARTAEGDKVAALDAGADDYLIKPFGAAELLARVRAHLRRRF 124

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +     T    G +RV    R  E  G+   L   E R+L YL+AN    +   Q+  A
Sbjct: 125 RAGTTGMTVFEFGNVRVDLGKRIVEKDGQQIHLTPIEFRLLAYLIANPDSVLTHRQLLKA 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G      + + V  ++  +RKK+ +    DP   K  L  S
Sbjct: 185 VWGP-SHIEDSHYVRVYMGHVRKKIED----DPTRPKFILTES 222


>gi|39937428|ref|NP_949704.1| two-component transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39651287|emb|CAE29809.1| two-component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris CGA009]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 12/150 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   +L R IR  S VP++ ++     ++ ++    G DD V KP   RE+L R+  I 
Sbjct: 74  GETGFDLARSIRETSDVPIVMLTARHEAESRIEGLQIGADDYVAKPFEPRELLLRIGNIL 133

Query: 117 RRLK-VSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171
           +R       +AET   GP  VF   R    QG E+  L  RER +L  L A  G+ V + 
Sbjct: 134 KRTAPAPAAKAETVAFGPY-VFHIERGELRQGDEIVHLTDRERDMLRMLAAAPGETVPRG 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +  A          E  V+  I++LR+K+
Sbjct: 193 DLSGA------GNANERAVDVQINRLRRKI 216


>gi|22299966|ref|NP_683213.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296151|dbj|BAC09975.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 242

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 7/135 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAET- 128
           +P++ ++        ++ F++G DD + KP    E+LARV A+ R   R+  +    E  
Sbjct: 77  IPILMLTALSQTHNKVEGFNAGADDYLTKPFELEEMLARVRALLRRADRIPATAGHREIL 136

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             GP+ +  +  +    G++  L R E  +L  L+   G+ V+ ++I   ++G +D   +
Sbjct: 137 SYGPLTLVPERFEVSWFGKIIKLTRLEFELLHCLLQRHGQTVSPSEILKEVWG-YDPDDD 195

Query: 187 ENVVESHISKLRKKL 201
              +  H+  LR KL
Sbjct: 196 IETIRVHVRHLRTKL 210


>gi|150018389|ref|YP_001310643.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904854|gb|ABR35687.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 5/164 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    +R  
Sbjct: 61  LEVLRRIRKTSDLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKRRT 120

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V   R       G + +           +   L  RE  +L+ L+ N+   + +  +   
Sbjct: 121 VIEKRDTDIISCGLLSLDKMRHKVTYDNKEIELTNREFTLLKILLENKNIVLTRDILMEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 181 VCG-YDYIGETNVIDVYIRFLRTKIDDAFKTKIITTVRGVGYVI 223


>gi|71275170|ref|ZP_00651457.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71899807|ref|ZP_00681957.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71163979|gb|EAO13694.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71730398|gb|EAO32479.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 281

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G   +E+ R +R  A  Q P++ ++   SL   L  FDSG DD + KP   +E+  R+ A
Sbjct: 112 GMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNA 171

Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR K    R  ETG +    D  +   +G++  L     +IL+ LM      V +  +
Sbjct: 172 LSRRGKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 231

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G  +E  + + +  HI  LR  +        + ++  +GY I
Sbjct: 232 ETRVWG--EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 276


>gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR  
Sbjct: 62  FEVCQQIREFSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAS 121

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + +  +    G +++  + R   V  +   +  RE  +LE L +N GK  ++ ++ + I
Sbjct: 122 KNADSKDVISYGDLKLNEEYRRVFVGSKEINVTSREYELLELLASNPGKVYSREELLTTI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN 203
           +G  +   +   V+ HI +LR+KL +
Sbjct: 182 WGT-EYPGDVRTVDVHIRRLREKLES 206


>gi|302388461|ref|YP_003824283.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302199089|gb|ADL06660.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 231

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 11/144 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR     N  
Sbjct: 67  VRETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQLGNMN 126

Query: 127 E--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G + +  D ++  V+GE+  L   E  IL  L+ N GK  +  +I+  I+
Sbjct: 127 QQPAGQVYKCGGLAINDDNKEVTVEGELIKLTPIEYNILLLLVRNAGKVFSIDEIYEQIW 186

Query: 179 GLFDEAV-EENVVESHISKLRKKL 201
              +EA+  +N V  HI  +R+K+
Sbjct: 187 N--EEAIGADNTVAVHIRHIREKI 208


>gi|294143010|ref|YP_003558988.1| DNA-binding response regulator [Shewanella violacea DSS12]
 gi|293329479|dbj|BAJ04210.1| DNA-binding response regulator [Shewanella violacea DSS12]
          Length = 225

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 8/165 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L+L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   +  R 
Sbjct: 60  LKLLAALRATGSQTPVLILSALGHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMLRG 119

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K +      G + +    R   + G    L  +E ++L+YLM +  + +++T +F A+
Sbjct: 120 LAKPTETELSVGNLLMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFEAV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +   FD     NV++ HI+KLR+K   +LGF + +++ R  GY +
Sbjct: 180 WDYHFDP--RTNVIDVHIAKLRRKF-EELGFGELIETVRGAGYRL 221


>gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R+ R+ ++   +P+I +S            D+G DD + KP   RE+++RV A+ R
Sbjct: 63  IEVCRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGADDYITKPFSPRELVSRVKALLR 122

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  ++++  E   +++F    +    G+  PL  +E ++L  L    G+  ++  +  
Sbjct: 123 RARPALASDMMEFEDLQIFPSRMEVRRAGKTVPLGPKEYQLLLTLFERPGQVFSRPLLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G     VEE  V+ H S+LRK +
Sbjct: 183 RVWG-HGVFVEERTVDVHFSRLRKAI 207


>gi|291558106|emb|CBL35223.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 227

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 87/168 (51%), Gaps = 15/168 (8%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +R+  +  P++ ++    ++  +   D G DD + KP    E+L+RV A+ RR 
Sbjct: 60  LEVLKTLRSEGNTTPILLLTAKAEVEDRIAGLDMGADDYLPKPFVMGELLSRVRAMLRR- 118

Query: 120 KVSNNRAETGPIRVFSDG----RDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +R  T  I  F +        E++G  +   LP+ E +++E LM N+G  ++   I
Sbjct: 119 ---KDRF-TPDIMTFGNVSLNLSSCELKGPLQSIVLPKIEYKLMELLMLNKGIYLSTDDI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++G ++   E   V  +IS +RK+L   +G D  + +KR +GY++
Sbjct: 175 LVKVWG-YESDAESGAVWVYISYVRKRLAT-IGADIEIRAKRSVGYTL 220


>gi|254490292|ref|ZP_05103481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxidans DMS010]
 gi|224464425|gb|EEF80685.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxydans DMS010]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 10/166 (6%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E  R +RA+   + +P+I ++     +  +     G DD VNKP    E++AR+ A+ R
Sbjct: 62  IEFIRRLRANEFLANIPVIMLTAKGESEDMVKGLAVGADDYVNKPFSPPELMARIRAVLR 121

Query: 118 RLKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +  ++    + ++G + + +      V      L   E R+L + M N  +   ++Q+
Sbjct: 122 RCQPDSSDEGQQLQSGNLVLDTKSHRVTVDDTRIELGPTEFRLLHFFMKNPERAYNRSQL 181

Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              ++G  D   +EE  V+ HI +LRK L +      + + R +GY
Sbjct: 182 LDYVWG--DTVYIEERTVDVHIRRLRKALESSGHDHLIQTVRGVGY 225


>gi|197285448|ref|YP_002151320.1| DNA-binding transcriptional regulator BaeR [Proteus mirabilis
           HI4320]
 gi|227355932|ref|ZP_03840324.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194682935|emb|CAR43323.1| two-component system response regulator [Proteus mirabilis HI4320]
 gi|227163920|gb|EEI48822.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 4/151 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G+  + L + +R  S +P+I ++        L   + G DD + KP   RE++ARV
Sbjct: 59  LMLPGKDGITLCKELRQFSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARV 118

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAK 170
             + RR     +  +   + V  D +  ++Q   ++  L   E R+++ L    GK +++
Sbjct: 119 KTLLRRYYRPQDIVQNSAL-VIIDEQAYQIQYHNKILDLTTAEFRLIKALATQPGKVLSR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            Q+   +Y  +   V +  ++SHI  LR+KL
Sbjct: 178 DQLMDHLYDDY-RIVTDRTIDSHIKNLRRKL 207


>gi|124516766|gb|EAY58274.1| putative two component transcriptional regulator, winged helix
           family [Leptospirillum rubarum]
          Length = 259

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R IR+     +VP++ +S        +   + G DD + KP   RE++ARV A+ R
Sbjct: 71  VEVVRFIRSQKNIGKVPILALSAVSDADWKIRTIEEGADDFLAKPFSSRELVARVHALAR 130

Query: 118 RLK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R++       +   R + G + V +   +  + G    L   E RIL YL+++    + +
Sbjct: 131 RVEKERDSGPMPKARYDLGDLVVDTYRYETRIDGREIRLTPIEFRILVYLVSHEDVVIRR 190

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            ++   ++G   E V+E+ +  HI  LR+KL  K      DS RF+
Sbjct: 191 EELMKVLWGESWE-VDEHNLNVHIWALRRKLGEK-----SDSPRFI 230


>gi|126699904|ref|YP_001088801.1| two-component system response regulator [Clostridium difficile 630]
 gi|254975883|ref|ZP_05272355.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255093270|ref|ZP_05322748.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255101433|ref|ZP_05330410.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
 gi|255307306|ref|ZP_05351477.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
 gi|255315012|ref|ZP_05356595.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255517687|ref|ZP_05385363.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255650797|ref|ZP_05397699.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|260683880|ref|YP_003215165.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260687540|ref|YP_003218674.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|306520698|ref|ZP_07407045.1| two-component system response regulator [Clostridium difficile
           QCD-32g58]
 gi|115251341|emb|CAJ69173.1| Two-component response regulator [Clostridium difficile]
 gi|260210043|emb|CBA64112.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260213557|emb|CBE05314.1| two-component system response regulator [Clostridium difficile
           R20291]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I IS        +   + G DD + KP +  E++ARV +  RR     N  
Sbjct: 67  IREERNIPIILISAKSEDTDKIIGLNIGADDYITKPFNLLELIARVKSNLRRYVTLGNYE 126

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +T       G + + +  ++ ++ GE   +   E +I+E L+ N+G+  +  +I+  ++ 
Sbjct: 127 DTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIYEKVWN 186

Query: 180 LFDEAVE-ENVVESHISKLRKKL 201
             +E+   EN V  HI ++R+K+
Sbjct: 187 --EESFNSENTVAVHIRRIREKI 207


>gi|90023478|ref|YP_529305.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89953078|gb|ABD83093.1| Phosphate regulon transcriptional regulatory protein phoB
           [Saccharophagus degradans 2-40]
          Length = 234

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++     S++P+I ++        +   + G DD + KP   RE++AR+ 
Sbjct: 59  GTSGIELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLK 118

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR   +++   + PI+V     DP      +      +   E R+LE+ + ++ +  
Sbjct: 119 AVLRR---TDSMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVY 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 176 TRNQLLDHVWG-GNVYVEERTVDVHIRRLRKAL 207


>gi|52081822|ref|YP_080613.1| two-component response regulator YvrH [Bacillus licheniformis ATCC
           14580]
 gi|52787209|ref|YP_093038.1| YvrH [Bacillus licheniformis ATCC 14580]
 gi|319647739|ref|ZP_08001957.1| YvrH protein [Bacillus sp. BT1B_CT2]
 gi|52005033|gb|AAU24975.1| two-component response regulator YvrH [Bacillus licheniformis ATCC
           14580]
 gi|52349711|gb|AAU42345.1| YvrH [Bacillus licheniformis ATCC 14580]
 gi|317390080|gb|EFV70889.1| YvrH protein [Bacillus sp. BT1B_CT2]
          Length = 242

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 14/205 (6%)

Query: 27  EGFNSL----EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           EGF+ +      EE L    ++ V  I   ++  G+   ++   IR H+  P+  ++   
Sbjct: 26  EGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQTGFDVSPEIRRHTNAPIFFLTAKT 85

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---D 139
           S    L  F  G DD + KP +  E++AR+ A  +R  +    A       +   R    
Sbjct: 86  SDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKRTYIHKEVAAASVSSAYEYERFIFH 145

Query: 140 PE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
           P+     V GE      +  ++L+Y   +  + ++K QI+  ++G+     + N V  HI
Sbjct: 146 PDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLSKDQIYEKVWGVPSYG-DSNTVMVHI 204

Query: 195 SKLRKKL-RNKLGFDPVDSKRFLGY 218
            KLR+K+ ++    + + + R LGY
Sbjct: 205 RKLREKIEKDPSSPEYIVTIRGLGY 229


>gi|88856021|ref|ZP_01130683.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814888|gb|EAR24748.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 250

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 8/183 (4%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           R DV  ++  + G  + +  L R+     Q P++ ++   S+   +     G DD V KP
Sbjct: 67  RPDVVVLDIMMPGL-DGLAVLTRLRADGIQTPILFLTAKDSVDDRIAGLTVGGDDYVTKP 125

Query: 103 IHHREILARVAAIYRRLKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157
               E++AR+ A+ RR  +     SN   E G + +     +    G    L   E  +L
Sbjct: 126 FSLEELVARLRALLRRSSITIAGDSNPVIEVGDLTLDESTYEVARGGTRVELTATEFELL 185

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
            YLM N  + +++ QI   ++  +D     +VVE +IS LRKK+ + LG   + + R +G
Sbjct: 186 RYLMRNPRRVLSRAQILDRVWS-YDFGGRASVVEIYISYLRKKI-DVLGPPMIHTVRGVG 243

Query: 218 YSI 220
           Y +
Sbjct: 244 YML 246


>gi|75762301|ref|ZP_00742183.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228905558|ref|ZP_04069507.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|74490204|gb|EAO53538.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228854094|gb|EEM98803.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 214

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 12/167 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR   Q P++ +S        +     G DD + KP    EI+ARV A  RR   
Sbjct: 39  QLIKKIRETLQFPILILSAKSQEVDKIIGLGIGADDFITKPFSALEIIARVQAHLRRSYE 98

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N++A  G  +    G               E   L   E +IL   M + G+   K QI
Sbjct: 99  FNDKAVEGKEKQIHMGDLVLDHHSCTLYKSSETITLSATEYKILTLFMGDPGRIFTKKQI 158

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK--RFLGY 218
           F +++  +    ++N +  HIS+LR+KL +    +PV  K  R LGY
Sbjct: 159 FESVWSDY-YCADDNTIMVHISRLREKLEDSPK-NPVYIKTIRGLGY 203


>gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 241

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 9/146 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
           +R  S VP+I ++   ++   +   + G DD + KP   +E+ AR+A I RR   K S N
Sbjct: 71  LRKESDVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRRCFHKTSVN 130

Query: 125 RA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +++ ++ R      +   L   E  +LE L+ N GK  ++ ++   ++
Sbjct: 131 TTPNSTIIRVGNLKIDTNKRQVYKNEQRIRLTGVEFSLLELLVNNSGKVFSRLEMLQLLW 190

Query: 179 GLFDEA-VEENVVESHISKLRKKLRN 203
           G      ++  VV+ HIS+LR K+ +
Sbjct: 191 GCVPGLHLDTRVVDVHISRLRTKVED 216


>gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 234

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + IR H++ VP++ ++   +++  +   D G +D + KP    E+LAR+    R  
Sbjct: 61  LEVLKRIRKHNETVPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALRFS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173
             S     +  +  F D    E   EV        L  RE  +L + M +     ++ Q+
Sbjct: 121 HKSAPEPTSSSVHTFQDLSLNEQTREVTRNALQIDLTPREFDLLLHFMKHAKLVQSREQL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +A++G +D   + NVV+ ++  LR+KL   L   P + + R +GY +
Sbjct: 181 LNAVWG-YDYYGDTNVVDVYVRYLRQKLEVNLNLPPLLHTVRGVGYVL 227


>gi|255523659|ref|ZP_05390626.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512714|gb|EET88987.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           DV  ++  L GK     E+ + IR   ++P+I +S        +     G DD + KP  
Sbjct: 47  DVVVVDLMLPGKDG--YEIVKAIRDKFEIPIIIVSAKNEDIDKIRGLGFGADDYLTKPFS 104

Query: 105 HREILARVAAI---YRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
             E++AR+ +    Y RL   KV+        + + +D     V G+   L  +E  +L 
Sbjct: 105 PAELVARIRSHIMRYERLSGKKVTLEIISHKAMEIQTDSHKVFVNGKEIFLTTKEYELLV 164

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           +L +N      K QIFS+I+G  D   +   V  HI KLRKK+    G
Sbjct: 165 FLASNPNIVFTKDQIFSSIWGE-DYCGDTATVAVHIQKLRKKIEKDSG 211


>gi|238922448|ref|YP_002935961.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|238874120|gb|ACR73827.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|291526222|emb|CBK91809.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291526732|emb|CBK92318.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNN 124
           IR  S+VP+I +S        +   + G DD V KP +  E++ARV +  RR     SN+
Sbjct: 66  IRKESRVPIIILSAKTEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTTLSSND 125

Query: 125 RA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            A     E G + V  D +   V GE   L   E  IL  L+ N+GK  +  +I+ +I+ 
Sbjct: 126 AAGDKVYEAGGLLVNDDLKKVTVDGEEVKLTPIEYNILLLLLKNKGKVYSINEIYESIWN 185

Query: 180 LFDEAV-EENVVESHISKLRKKL 201
             +EA+  +N V  HI  +R+K+
Sbjct: 186 --EEAIGADNTVAVHIRHIREKI 206


>gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 223

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKL 204


>gi|209809430|ref|YP_002264968.1| transcriptional regulator, response regulator [Aliivibrio
           salmonicida LFI1238]
 gi|208010992|emb|CAQ81404.1| transcriptional regulator, response regulator [Aliivibrio
           salmonicida LFI1238]
          Length = 201

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 103/215 (47%), Gaps = 21/215 (9%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           +L + GY  +  D+   +  F       W    A  D+  ++  L  +G+ +  LP   +
Sbjct: 3   SLEEAGYNCIHSDNATDVSSF-------W----AEADIVILDRQL-PEGDSLTWLPEW-K 49

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAE 127
               +P+I ++   S++  +   DSG +D + KP    E+LAR+ A  R  +  + N+ +
Sbjct: 50  QIKDIPVILLTALVSIRDKVTGLDSGANDYLTKPFAEAELLARLRAHLRSPESEAENKTQ 109

Query: 128 --TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G + + +  RD     +   L R E  +L +L +N GK   + ++   ++G ++   
Sbjct: 110 LVVGVLSIDTSTRDVINGSDAVTLTRTEFDLLLFLASNLGKVFTRDELLDQVWG-YNHFP 168

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               V++HI +LR+K+   +G + +++ R +GY +
Sbjct: 169 TTRTVDTHILQLRQKI---VGIE-IETLRGVGYKM 199


>gi|23464658|ref|NP_695261.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23325218|gb|AAN23897.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 36/218 (16%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISD 80
           LE E +   +  + + A+E F I K + +L    LP        R IRA S VP+I ++ 
Sbjct: 21  LENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTGVARRIRATSNVPIIMLTA 80

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---------------VSNNR 125
                  +   ++G DD V KP    E+LAR+ A +R  K                + N 
Sbjct: 81  KSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKPAAEDGATGGASGGNANVNH 140

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E GPI +          G+   L   E  +L  L A  G+ ++++ +   ++G ++ + 
Sbjct: 141 LERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEAISRSSLLKNVWG-YENSG 199

Query: 186 EENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +  +V  H+ +LR K+ +    DP     V + R +GY
Sbjct: 200 DTRLVNVHVQRLRAKVED----DPENPQIVQTVRGIGY 233


>gi|332711870|ref|ZP_08431800.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332349198|gb|EGJ28808.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 13/145 (8%)

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA   Q+P++ ++   +    +   D+G DD + KP+   E+ AR+ A+ RR     
Sbjct: 64  RKLRAQGYQMPILMLTGRDTTNDKVKGLDAGADDYLVKPVDLPELFARIRALLRR----- 118

Query: 124 NRAETGPIRVFSDGR-DP---EVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++   P+  + D R DP   EV     P+   R+E  +LE+L+ N  + + ++ I   +
Sbjct: 119 GQSIAPPVLKWGDLRLDPSTYEVSYAHQPIHFTRKEYSLLEFLLRNGRRVLTRSVIIEHV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +  F+   EE  V ++I  LR+KLR
Sbjct: 179 WS-FENPPEEETVNAYIKSLRRKLR 202


>gi|330899210|gb|EGH30629.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 249

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 71  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 130

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 131 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 188

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 189 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 227


>gi|312130452|ref|YP_003997792.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311906998|gb|ADQ17439.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 222

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 16/207 (7%)

Query: 13  DGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---------- 61
           +G I +  DD   LE    +LE E++   SA   + AIE     + + +L          
Sbjct: 2   NGKILVVDDDEDILELLIYNLEKEQYQVRSAENGLKAIEVAKEFQPDIILMDIMMPLLDG 61

Query: 62  -ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E  +II+    Q  LI ++      + +  F+ G DD + KPI  R +L+R+ A +R+ 
Sbjct: 62  IEAGKIIKTEQPQTHLIYLTARAEEYSEVAAFEVGADDYITKPIKPRALLSRIQAYFRKE 121

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           K    N  E   + +         + G V  LP++E  IL +L ++  K  ++  +   I
Sbjct: 122 KSQEKNVLEISGLVINKQNYSVTTEDGSVKVLPKKEFEILYFLASHPNKVQSRDSLLQKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G  D  V E  ++ HI K+R+K+ +K
Sbjct: 182 WGT-DIYVVERTIDVHIRKVREKIGDK 207


>gi|312868310|ref|ZP_07728510.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
 gi|311096055|gb|EFQ54299.1| response regulator receiver domain protein [Streptococcus
           parasanguinis F0405]
          Length = 241

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 24/212 (11%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61
           +LI+D   +++   +L G++   L+ F+  E     Q  A  D+  ++  L GK G++VL
Sbjct: 17  LLIEDNNDIQEILYSLLGEEHEVLQAFSGTEGLRVFQQEAI-DLVLLDIMLPGKNGDQVL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR   QVP+I ++          +  +G +D + KP +  E+ ARV     +L+ 
Sbjct: 76  EE---IRLQGQVPVIMMTALGDKHLISQYLLAGANDYIVKPFNLDEVAARVTV---QLRN 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP---------RRERRILEYLMANRGKRVAKTQ 172
           +N  A+  P       ++  +  E F L          ++E +I E L+A+  K   K +
Sbjct: 130 NNTPAQEPPSSKKLTFKNLVLNPETFELESGEQTLRLGKKEFQIFETLLAHPKKIFTKEE 189

Query: 173 IFSAIYGLFDEAVE---ENVVESHISKLRKKL 201
           ++ A++    E V    +N + + +S LRKK+
Sbjct: 190 LYEAVW----EEVYLPGDNTLNAQLSNLRKKI 217


>gi|228997776|ref|ZP_04157380.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
 gi|229005316|ref|ZP_04163031.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228755955|gb|EEM05285.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228761908|gb|EEM10850.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
          Length = 215

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 79/158 (50%), Gaps = 15/158 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           I+ +S V ++ ++     +  L    SG D+ V KP H   +L R   +  +   ++V N
Sbjct: 66  IKKNSSVKVLMLTAKSENEDELAALQSGADEYVKKPFHPGILLTRAKKLLNQDEVIQVQN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            + +    +V+   ++ E+        + E  +++  + ++G  + + ++   ++G FD 
Sbjct: 126 LKIDLIKNKVYKSDKELEI-------TKTELELIKCFLNHKGTILTREKLLDIVWG-FDY 177

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +E  V++H+ +LRKK+    G D + + R LGYS++
Sbjct: 178 FGDERTVDTHVRRLRKKI----GEDIIKTHRGLGYSLE 211


>gi|229162132|ref|ZP_04290103.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228621339|gb|EEK78194.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 223

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           IR +  +P+I ++    L      F +G DD + KP    E++ R+ A+ RR ++ S + 
Sbjct: 67  IRKYHDIPVILLTAKDQLVDKEKGFIAGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                  +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+ D   
Sbjct: 127 ITLHGTTIDRKGIEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 186 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|192293211|ref|YP_001993816.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|192286960|gb|ACF03341.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 12/150 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   +L R IR  S VP++ ++     ++ ++    G DD V KP   RE+L R+  I 
Sbjct: 74  GETGFDLARSIRETSDVPIVMLTARHEAESRIEGLQIGADDYVAKPFEPRELLLRIGNIL 133

Query: 117 RRLK-VSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171
           +R       +AET   GP  VF   R    QG E+  L  RER +L  L A  G+ V + 
Sbjct: 134 KRTAPAPAAKAETVAFGPY-VFHIERGELRQGDEIVHLTDRERDMLRMLAAAPGETVPRG 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +  A          E  V+  I++LR+K+
Sbjct: 193 DLSGA------GNANERAVDVQINRLRRKI 216


>gi|21224124|ref|NP_629903.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|256784797|ref|ZP_05523228.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289768685|ref|ZP_06528063.1| two-component system regulator [Streptomyces lividans TK24]
 gi|2687343|emb|CAA15884.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|289698884|gb|EFD66313.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 10/160 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR    +   
Sbjct: 68  IRKRTSTPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRTAHEDATG 127

Query: 127 ET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            T      G +R+    R   V G V  L R+E  +L  L    G    + QI S ++  
Sbjct: 128 STETVVRLGAVRIELPTRQVSVDGSVVQLTRKEFDLLALLAQRPGVVFRREQIISEVWRT 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E      +E H++ LR KL      + V   R +GY +
Sbjct: 188 SWEGTGRT-LEVHVASLRSKLHMPALIETV---RGVGYRL 223


>gi|261252656|ref|ZP_05945229.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260936047|gb|EEX92036.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 216

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 19/206 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------G 55
            +LI+D  L+  G ++ F  +G     +  L    W Q S+  +   + A L+       
Sbjct: 4   LLLIEDDPLLGQGLVSFFESNG-----YQCL----WAQDSSNANKLWLRADLVVLDRQLE 54

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G+ +  LP  +   + +P+I ++    +Q  ++   +G  D V KP  + E+LARV   
Sbjct: 55  DGDSLQHLPNWLLLKA-LPVIVLTAKVEVQQRVEGLMAGAKDYVTKPFSNEELLARVITQ 113

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            R L VS+       I++    R   ++     L  +E ++L   + N+G+   + ++ +
Sbjct: 114 LRPLGVSH--LNYANIQINLSERIAYLEESPIALKPKEFQLLVLFIQNQGRVFHRDELLN 171

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            I+G +        V++HI +LR+KL
Sbjct: 172 KIWG-YQAFPSTRTVDNHILRLRQKL 196


>gi|227113940|ref|ZP_03827596.1| two-component system response regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 220

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 11/204 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G+   GFN   F E    +A    +  +A ++      ++
Sbjct: 4   LLIEDDRLIGDGLKA-----GLIKLGFNIDWFTEGKAGAAALKAAPYDAVVLDLSLPGMD 58

Query: 63  LPRIIRAHSQV----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              I+R   Q     P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR
Sbjct: 59  GMDILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRR 118

Query: 119 LKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  A T G + +    R   +  E   L  RE  +LE  + N  + + + Q+   +
Sbjct: 119 RHGQLQPALTHGAVSLEPGSRSVTLNSEPLILKSRELALLELFLLNPSRVLTRAQLEEKL 178

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           YG +D+ V  N VE HI  LRKKL
Sbjct: 179 YG-WDDDVSSNAVEVHIHHLRKKL 201


>gi|227547950|ref|ZP_03977999.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079961|gb|EEI17924.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 6/113 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFSDGRDPEVQGEVFP 148
           G DD V KP    E++ R+  I RR  V+ +      +R     +  D  +    GE+  
Sbjct: 101 GADDYVTKPFSLEEVITRLRVILRRGNVTADADSDSTLRYADLTLNDDTHEVTKSGEIID 160

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L   E  +L YLM N    ++K +I   ++  +D   + NVVES+IS LR+K+
Sbjct: 161 LSPTEFNLLRYLMLNAEVVLSKAKILDNVWH-YDFGGDGNVVESYISYLRRKV 212


>gi|168178171|ref|ZP_02612835.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182671139|gb|EDT83113.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 6/145 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N  +   I +  D R+  +  +   L  RE  IL+ LM    K   K+ +F +
Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++       ++N +  HIS LR KL
Sbjct: 185 VWS-SKYLCDDNTINVHISNLRNKL 208


>gi|75760587|ref|ZP_00740619.1| Two-component response regulator ycbL [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228903054|ref|ZP_04067192.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 4222]
 gi|228967633|ref|ZP_04128655.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|74491922|gb|EAO55106.1| Two-component response regulator ycbL [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228792069|gb|EEM39649.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228856589|gb|EEN01111.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 4222]
          Length = 241

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 73  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 132

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G    L  +E  IL+  + N+ +   K QI+
Sbjct: 133 KYSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIY 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 193 TLVWNE-EYYGDDNVINVHMRRLREKIES 220


>gi|320457990|dbj|BAJ68611.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 245

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD + KP    E+ ARV A  RR +   + + T   I++    ++  V     PL + 
Sbjct: 117 GADDYLTKPFRIAELRARVHAHLRREQRERHVSLTFDRIKIDLSAKELLVDNIPVPLTKS 176

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  I EYL  NRG+  +K QI+ A++  +    + + + +HI  +R K   + G  P+ +
Sbjct: 177 EYLICEYLAGNRGQVFSKKQIYEAVFPFYGYG-DGSTISTHIKNIRSKF-EEAGVQPIVT 234

Query: 213 KRFLGY 218
              +GY
Sbjct: 235 VWGIGY 240


>gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 236

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 22/162 (13%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREMRSASQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQT 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQ----------------GEVFPLPRRERRILEYLMANRG 165
           S       P  + +D +   V+                G    +P +E  +L +L ++  
Sbjct: 125 S-----PVPAALHTDHQGEYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPN 179

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           +   + Q+   I+G ++   +   V+ HI +LR+K+++  G+
Sbjct: 180 QVFTREQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHAGW 220


>gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
          Length = 236

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 11/118 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LAR+ AI+RRLK +                G IRV     +  V+
Sbjct: 95  GADDYLTKPFSPREVLARMKAIFRRLKPTTTETLQEDTPKAPLVIGEIRVDEQNYEVFVR 154

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +   L  +E  +L Y M  + + + +  +   I+  +D A +  +V+ HIS LR K+
Sbjct: 155 NQPIELTPKEFELLVYFMKRKDRVINRENLLERIWQ-YDFAGQSRIVDVHISHLRDKI 211


>gi|326202141|ref|ZP_08192011.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987936|gb|EGD48762.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 233

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 11/150 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR +S VP+I ++   S    +   D G DD V KP   R++LARVAA+ RR+ V
Sbjct: 66  EICKRIRKNSSVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPRQLLARVAAVLRRV-V 124

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               A+TG I +F +G         +    G    +   E RIL  +     K   + ++
Sbjct: 125 KEPVADTGKI-IFDNGDLVIDTFVHEIRKAGNTINVTPNEYRILVTMAGFPKKTFTRDEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   G   E  +   V++HI  LR+K+ +
Sbjct: 184 INMALGDDFEGFDRT-VDTHIKNLRQKIED 212


>gi|255263392|ref|ZP_05342734.1| transcriptional regulatory protein TctD [Thalassiobium sp. R2A62]
 gi|255105727|gb|EET48401.1| transcriptional regulatory protein TctD [Thalassiobium sp. R2A62]
          Length = 221

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
           F+LI+D   +    +     DG  ++    LE       +   D+  ++  L  G G   
Sbjct: 3   FLLIEDNEALAGAVVDRLALDGHVVDHAGDLETASDFTHTTDYDLILLDIMLPDGDGRSF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L   R   A S+ P+I ++    +   +   D G DD + KPI   E+ AR  A+ RR  
Sbjct: 63  LAQQR--EAKSRTPIIVLTARSEVSDRVGMLDLGADDYMVKPIDFSELEARCRAVLRRQG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N    G +   S     ++ G+   L  RE R+ E  +    +  +K ++   ++ 
Sbjct: 121 GAARNIISFGELEFDSLAGTLKIGGDETKLRTRELRLFEIFVNAPNQVFSKPKLVDRLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            +DE   EN +E ++ +LR+ L      D  + + R LGY ++ 
Sbjct: 181 -YDEEASENAIEVYVGRLRRHLDTS---DVSITTVRGLGYKLEL 220


>gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 233

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 40  SSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           +S R D+  ++  L G  G +V    R IR  S VP+I +S        +   + G DD 
Sbjct: 45  ASFRPDLIILDLMLPGIDGYQVC---REIRHTSDVPIIMLSAKGETFDKVLGLELGADDY 101

Query: 99  VNKPIHHREILARVAAIYRRLKV------SNNRAETGP-IRVFSDGRDPEVQGEVFPLPR 151
           + KP   +E++ARV A+ RR +V      S+ +  T P + V          G    +P 
Sbjct: 102 MIKPFDSKELVARVRAVLRRFQVKQPSPSSSEKCVTYPDLTVNLTNYAVTYMGRQVDMPP 161

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +E  +L +L A+  +   + Q+   I+G ++   +   V+ HI +LR+K+++
Sbjct: 162 KELELLYFLAASPNQVFTREQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKD 212


>gi|225573201|ref|ZP_03781956.1| hypothetical protein RUMHYD_01392 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039466|gb|EEG49712.1| hypothetical protein RUMHYD_01392 [Blautia hydrogenotrophica DSM
           10507]
          Length = 223

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 20/168 (11%)

Query: 58  EKVLELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           E+V++LP II   R  SQ  + G             F SG DD V KP     + +R+ A
Sbjct: 69  ERVVDLPIIILTVRGDSQDVVAG-------------FQSGADDYVVKPFELTVLYSRMLA 115

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR++ +          V    R    +G+    L + E  +L  LM N+GK + +TQ+
Sbjct: 116 LLRRVQKAEETKLFCDDLVLDKERLTVSRGQKEIVLSQSEYHLLLLLMENKGKTITRTQL 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              I+      V  N +   + +LR+KL N      V   R  GY ++
Sbjct: 176 LEQIWDNHGHFVNNNTLTVTVKRLREKLCNPTCLKTV---RSFGYRME 220


>gi|261418666|ref|YP_003252348.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319765481|ref|YP_004130982.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261375123|gb|ACX77866.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317110347|gb|ADU92839.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 223

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +R +     ++ ++   ++Q  +   ++G DD + KP    E++AR+ A+ RR 
Sbjct: 61  LDICRRLRQNGYTGAILMLTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            V   + E      F+  R          E+F  P RE ++L+ L+ N+G+ V +  I  
Sbjct: 121 FVP-LQEEKVAFHGFTLNRTSHTLHRGDEEIFLTP-REFQLLDLLVQNQGQVVPRETILD 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G +D  V    +++ I  LRKKL++    D + + R +GY ID
Sbjct: 179 RVWG-WDADVSMKTIDATIKLLRKKLKD----DVIQTVRGVGYKID 219


>gi|254514188|ref|ZP_05126249.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR5-3]
 gi|219676431|gb|EED32796.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR5-3]
          Length = 236

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           R D+  ++  L G G  +  L R+ R  +  ++P+I ++   +    +   + G DD + 
Sbjct: 47  RPDIVLLDWMLPG-GSGIELLRRLKRDETTREIPVIMLTAKTAEDNVIQGLEVGADDYMT 105

Query: 101 KPIHHREILARVAAIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           KP   RE++AR+ A+ RR  V  S +R +   + +    R   +  +   +   E  +L+
Sbjct: 106 KPFAPRELIARIKALLRRSGVGESTDRMQVSELVLDGKSRRVFLAEQPLDMGPTEFNLLQ 165

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           + M++  +  ++ Q+   ++G  +  VEE  V+ HI +LRK L+
Sbjct: 166 FFMSHPERAYSRNQMLDQVWGA-NVYVEERTVDVHIRRLRKALQ 208


>gi|206977475|ref|ZP_03238370.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959463|ref|YP_002338015.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229138688|ref|ZP_04267270.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|206744325|gb|EDZ55737.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217066890|gb|ACJ81140.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228644807|gb|EEL01057.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 225

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 68  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 128 IQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWG-YDFEG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 187 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 222


>gi|220931316|ref|YP_002508224.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219992626|gb|ACL69229.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 237

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 21/157 (13%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  + +P+I ++   S    +     G DD + KP    E++ARV A  RR  
Sbjct: 64  VEVCRTIREITNIPIIMLTARDSEVDKVLGLRIGADDYITKPFLPGELIARVKAQLRRFF 123

Query: 121 V--------SNNRAETGPIRVFSDG-----RDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           V        S    + G +++  DG     R+ EVQ     L   E +IL  L    GK 
Sbjct: 124 VLGSEGDARSRKMVKFGDLKIDFDGYRVYKRNKEVQ-----LTSTEFKILLLLAREPGKV 178

Query: 168 VAKTQIFSAIYGLFDEAVE-ENVVESHISKLRKKLRN 203
             K QIF+ ++G  D+ +E +N V  HI +LR K+ +
Sbjct: 179 FTKKQIFNKVWG--DDYLEADNNVMVHIRRLRTKIED 213


>gi|332530299|ref|ZP_08406245.1| two component transcriptional regulator, winged helix family
           protein [Hylemonella gracilis ATCC 19624]
 gi|332040285|gb|EGI76665.1| two component transcriptional regulator, winged helix family
           protein [Hylemonella gracilis ATCC 19624]
          Length = 239

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 8/152 (5%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           VP++ ++   S+   +   + G DD + KP    E+ AR+ A+ RR  ++ + R   GP+
Sbjct: 79  VPVMILTARASVPDRVLGLNLGADDYLPKPFDLSELEARLQALLRRPGRMKSLRLRLGPL 138

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +  +     +  +V  L  RE   L  L+ + G+ V K  +  A++   DEA E   VE
Sbjct: 139 EMDRESGQVTLNQQVLALTPRETAALRVLLEHPGRAVGKEALHRAVFS--DEAAELEAVE 196

Query: 192 SHISKLRKKLRNKL-----GFDPVDSKRFLGY 218
             I +LRKKL             V + R LGY
Sbjct: 197 VLIHRLRKKLDTACRPPEPAAPTVSTIRGLGY 228


>gi|330965404|gb|EGH65664.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 11/153 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S VP++ +S   S    +   D+G +D V KP   +E LARV A+ R++  S+    
Sbjct: 71  REWSAVPVLVLSVRASEVQKVQALDAGANDYVTKPFGIQEFLARVRALLRQVSGSDKPES 130

Query: 128 T---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               GP+ V    R   + G+   L R+E  +L  L  + G+ + + Q+   I+G     
Sbjct: 131 ALRFGPLTVDLAYRRVLLDGQEVALTRKEYSVLAQLARHPGRVITQQQLLKDIWG----- 185

Query: 185 VEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
              +  +SH  ++    LR KLG DP  + RF+
Sbjct: 186 -PTHTEDSHYLRIVVGHLRQKLGDDPT-APRFI 216


>gi|325679755|ref|ZP_08159329.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
 gi|324108570|gb|EGC02812.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
          Length = 224

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I+   ++P+I +S        L  F+ G+DD + KP   +E++AR+ A+  R K S    
Sbjct: 67  IQKIKKIPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARIRAVLNRAKASQKTE 126

Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +      + +    R+ ++ GE   +  +E  +L YL+ N    +++ ++   ++G FD 
Sbjct: 127 DIIRYQGLEINFTAREVKIDGEKVSMTPKEYDLLFYLVRNMNIALSREKLLEEVWG-FDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLG 206
             ++  +++HI    K LRN LG
Sbjct: 186 YGDDRTIDTHI----KMLRNSLG 204


>gi|260549439|ref|ZP_05823658.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260407548|gb|EEX01022.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
          Length = 231

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           +P++ ++   +L   L  F +G DD + KP    E++ R+ A+ +R   +V+N++ +   
Sbjct: 77  MPILMLTARDTLDDKLKGFTAGTDDYLVKPFDFNELVMRIRALIKRAAGEVANHKIQIHD 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + S  +     G    LP  + ++L+ LM    K V K ++   ++G  DE  E + +
Sbjct: 137 LILDSATQTVIRAGNNIELPPIQFKLLKILMRQSPKVVTKQELMMELWG--DEEPESDAL 194

Query: 191 ESHISKLRKKLRNKLGFDP 209
            SHI  LRK +     FDP
Sbjct: 195 RSHIYNLRKMIDKP--FDP 211


>gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 238

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY      DG           EE L+     D   I   L+      LE+ R +R 
Sbjct: 22  LTKEGYEVFVAYDG-----------EEALKQVNEVDPDLIILDLMLPKIDGLEVAREVRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS------- 122
               P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   S       
Sbjct: 71  TKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGTSSGNSSEG 130

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  +   ++G 
Sbjct: 131 DENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREHLLQTVWG- 189

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
           +D   +   V+  + +LR+K+ +
Sbjct: 190 YDYFGDVRTVDVTVRRLREKVED 212


>gi|225851211|ref|YP_002731445.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Persephonella marina EX-H1]
 gi|225646536|gb|ACO04722.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Persephonella marina EX-H1]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 11/149 (7%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE  +++++     ++P+I ++   +    +   + G DD V KP   RE++AR+ A+ +
Sbjct: 61  LEFCKLLKSDKDTEEIPIIMLTAKSTEIDKIVGLELGADDYVTKPFSIRELIARIKAVLK 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R K S  + +   IR+     DP      + G+   L  +E ++L  L+   GK + + Q
Sbjct: 121 RSKRSFKKDKI--IRIKDLEIDPLKIEVRIDGKNIDLTAKEFKLLLLLINAEGKVLTRDQ 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I S+++   D  V +  ++ HI KLR KL
Sbjct: 179 ILSSVWE-NDLDVFDRTIDVHIKKLRDKL 206


>gi|222095607|ref|YP_002529664.1| response regulator [Bacillus cereus Q1]
 gi|221239665|gb|ACM12375.1| response regulator [Bacillus cereus Q1]
          Length = 234

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 77  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 136

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 137 IQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWG-YDFEG 195

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 196 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 231


>gi|182418119|ref|ZP_02949419.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237666207|ref|ZP_04526194.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377937|gb|EDT75477.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237658297|gb|EEP55850.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 6/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S+ P+I +S        +   DSG DD V KP H  E+LAR+  + R++ 
Sbjct: 63  IEIIKSIREISECPIIVVSARGQEIDKISALDSGADDYVTKPFHMGELLARIRVVERKMN 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V +   +   + +  + R   V      L   E ++L  ++AN+GK +    I  
Sbjct: 123 RDKVPVKDELFKCDYLTIDYEKRKVLVDDNEIHLTPIEYKLLTLMVANKGKVLTHNYILK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G + E  +   +   ++ LR+K+
Sbjct: 183 EVWG-YGENGDSKSIRVFMASLRRKI 207


>gi|153954268|ref|YP_001395033.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347149|gb|EDK33685.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 231

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQVP+I ++        +   D G DD + KP   +E ++R+ AI RR + 
Sbjct: 62  DVCKYVRKKSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFVSRIKAILRRTES 121

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +N + +      I + ++  +   +G    L  +E ++L   M N  + +++ +I   + 
Sbjct: 122 NNYKPKIFRCKDIVLNAETLEAYKKGHDLALSMQEYKLLLLFMNNAQRVMSREEILDNLT 181

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
               E  + N +  +I ++R+K+ ++    + + +KR  GY  D
Sbjct: 182 DGSGEYFDTNTLSVYIKRIREKIEQDSSNPEYIKTKRGFGYQWD 225


>gi|115377125|ref|ZP_01464339.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1]
 gi|310822859|ref|YP_003955217.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365834|gb|EAU64855.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1]
 gi|309395931|gb|ADO73390.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 6/151 (3%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNRAETGP 130
           P++ +S        +   + G DD V KP   RE++ RV A+ RR       + +   G 
Sbjct: 77  PVVIVSAKGQEADRIQGLEMGADDYVVKPFSVRELMLRVKAVLRRADADEGPSTQLTAGE 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I++ +      V+GE   L   E R+L  L+   G+   +  + S ++G+  E +    V
Sbjct: 137 IQLDTSRHQVRVKGEEVVLTALEFRLLHTLLERGGRVQTREVLLSDVWGIQAE-IHTRTV 195

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++HI +LR+KL      D +++ R +GY ++
Sbjct: 196 DTHIKRLREKLGP--AGDIIETVRGVGYKLN 224


>gi|113867441|ref|YP_725930.1| response regulator [Ralstonia eutropha H16]
 gi|113526217|emb|CAJ92562.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 223

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 6/151 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETG 129
           S++P+I ++   ++ + +   D+G DD + KPI   E+ AR+ A+ RR   +S+   + G
Sbjct: 71  SRIPVIVLTARDAIDSRIGGLDAGADDYLVKPIALDELAARLRAVTRRAAGLSSPVWKHG 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +      R    QG+   L  RE  +LE L+A+  + + +  +   +Y  +   VE N 
Sbjct: 131 ALEFHPAARQAYWQGKPLELTSREAMLLELLLAHPNRLLTRDFLRDKLYD-WQGGVESNA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E HI  LR+K+  K+    V + R  GY++
Sbjct: 190 LEVHIHHLRRKIHPKI----VRTFRGAGYTL 216


>gi|1653495|dbj|BAA18408.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 234

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+       
Sbjct: 62  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMPG 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 122 IPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 181

Query: 180 LFDE-AVEENVVESHISKLRKKL 201
              E  V+  VV+ HIS+LR KL
Sbjct: 182 YTPERHVDTRVVDVHISRLRAKL 204


>gi|88807098|ref|ZP_01122610.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788312|gb|EAR19467.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 248

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 14/159 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++  N   
Sbjct: 74  LRKESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEKENAAG 133

Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRER------RILEYLMANRGKRVAKTQIFSAIY 178
              +G I+V SD +    + +VF    R R       +LE L++  G+  ++ +I   ++
Sbjct: 134 IPNSGMIKV-SDLKIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFSRGEILKEVW 192

Query: 179 GLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           G   E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 193 GYTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 227


>gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL S4-171]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAET------GPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR +     +  N  E       G +++  +  +  +
Sbjct: 99  GADDYMTKPFSPREVVARIKAILRRTEGKAEVIEENTEEVEATILIGDLKILPESYEVYL 158

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 159 HDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 216


>gi|298291963|ref|YP_003693902.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296928474|gb|ADH89283.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 239

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 18/160 (11%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE  L L R +R  S VP+I ++        +   + G DD + KP + RE+LAR+ A+ 
Sbjct: 60  GEDGLSLCRYLRESSTVPVIMLTAMTEETDRIVGLELGADDYLAKPFNPRELLARIKAVL 119

Query: 117 RR----------LKVSNNRAETGPIRVFSDGRDPEVQGE---VFPLPRRERRILEYLMAN 163
           RR          LK    R E   + V   GR  E+ GE     PL   E R+L   + +
Sbjct: 120 RRVQSLPPQRGQLKAKEVRFERWSLNV---GRR-ELTGEDGMAVPLSTAEFRLLSVFLDH 175

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            G  +++ Q+     G   E   +  +++ +S+LRKK+ +
Sbjct: 176 AGLVLSRDQLLDLTVGRSAEPF-DRAIDNQVSRLRKKIES 214


>gi|295699991|ref|YP_003607884.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439204|gb|ADG18373.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 12/163 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +L   R++ A   VP++ +S+  S ++ +     G D+ +  P+   E  ARVAA+ 
Sbjct: 59  GADLLRSVRLV-AGEHVPIMFVSNDRSEESMVRALAGGADEYLALPLRDAEFRARVAALL 117

Query: 117 RR---LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR   ++ S     E GP R  +  R   ++GE  PL   + RI   L +N  + +++  
Sbjct: 118 RRAYPVRFSAATCFEIGPYRFDTVRRAVTLRGEPVPLSPTQYRIAVLLFSNIDRVMSRDH 177

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL----RNKLGFDPV 210
           IF+ ++G   E  E    ++SH+S+LR  L    RN     PV
Sbjct: 178 IFATVWG--REMREYTRTIDSHVSRLRLLLAIEPRNGFRLQPV 218


>gi|268611433|ref|ZP_06145160.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 243

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 24/218 (11%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV-L 61
           ++IDD A + +     F    +S     S E  E      +  +  ++   I  G++   
Sbjct: 6   LMIDDDATIAETTAEYFNMFDISTASVGSYEEAEAFLEKHQVSLLLLD---INLGDRSGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL + IR    +P++ IS   S    L   + G DD + KP     +LA+V A+  R   
Sbjct: 63  ELCKQIRRKYDMPILFISARTSDDDILTALNIGGDDYIKKPYTMSILLAKVKAVLTRYEK 122

Query: 120 ----------KVSNNRAETGPIRV-----FSDGRDPEV-QGEVFPLPRRERRILEYLMAN 163
                     KV +++  TG I+V      + G    + + E  PL   E ++L YL+ N
Sbjct: 123 AAEAAKTASAKVVSDQPMTGQIKVSEGILLNTGTHLLIRENETIPLKAMEYKMLLYLLEN 182

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           RG+ V K +  S ++   D  + E  +  HI  +R+K+
Sbjct: 183 RGRVVTKEEFLSNVWE--DSFIGEGTLPVHIRHIREKI 218


>gi|225387739|ref|ZP_03757503.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme
           DSM 15981]
 gi|225046157|gb|EEG56403.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme
           DSM 15981]
          Length = 231

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 21/204 (10%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIG-KGEKVLEL 63
           D  L K GY   F  DG            E + ++ RE  D   ++  L    G +V  L
Sbjct: 18  DMNLRKKGYATAFAYDGT-----------EAVLTARRERPDCILLDVMLPKISGIEVCHL 66

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
            +  +A   +P+I ++        +  FD+G DD + KP   RE+ AR+    RR + S 
Sbjct: 67  LKADQATGHIPVIMLTAKGEEDDKVTGFDAGADDYITKPFGWRELFARIEVALRRSQPSA 126

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +N      + ++ D    E  G    L   E  IL  L  +RG  V + ++  A+
Sbjct: 127 PQSQEDNALRVKDLAIYPDKYVVEQDGRRVDLTPTEFGILRVLAEHRGNIVTRNELNEAL 186

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
            G+ +   E   ++ H+  LRKKL
Sbjct: 187 -GITNNGGEIRSLDVHMRNLRKKL 209


>gi|168216104|ref|ZP_02641729.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182381612|gb|EDT79091.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 19/171 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRR- 118
           LE+ R IR  S+VP+I ++   ++   +   D+G DD + KP    E+LAR+  A+ +R 
Sbjct: 61  LEVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRV 120

Query: 119 --LKVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             +K   +    G +       +V  D  D E++     L  RE  +L+ LM N+   + 
Sbjct: 121 FTVKKDEDVIRCGLLTLDKMRHKVMYD--DTEIE-----LTNREFTLLQILMENKNIVLT 173

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +   + G ++   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 174 RDVLIEKVCG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223


>gi|91228118|ref|ZP_01262160.1| putative transcriptional regulator CpxR [Vibrio alginolyticus
           12G01]
 gi|91188236|gb|EAS74536.1| putative transcriptional regulator CpxR [Vibrio alginolyticus
           12G01]
          Length = 221

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +      P++ ++      + LD + +G D  + KP +  E+L R+ AI RR+ 
Sbjct: 61  MQVARRVCQRFATPILMLTALNDENSMLDGYQAGADQYIGKPFNVAELLMRIKAILRRVG 120

Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   R      ++  SD      Q    PL   E  +L YL+ N+G  ++K ++ + +  
Sbjct: 121 LERQRQTMCSTVQTISD------QLNSLPLTSTEAELLSYLVKNQGVVISKAELQTEVLK 174

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
                 + N ++ HIS +R+KL    L    + + R  GYS
Sbjct: 175 KELSPFDRN-LDMHISNIRRKLVEAGLSKQHIKTFRGKGYS 214


>gi|42781676|ref|NP_978923.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737599|gb|AAS41531.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 105/228 (46%), Gaps = 36/228 (15%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP------- 64
           Y+A +G +G+ +  F+++                +  FL  + E VL    LP       
Sbjct: 20  YVAKYGYEGIIVSDFHNV----------------LNIFLEEQPELVLLDINLPSFDGYYW 63

Query: 65  -RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---- 119
            R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR     
Sbjct: 64  CRQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDY 123

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             KV     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + +
Sbjct: 124 APKVEERMVEQQGLCLYPERLVLKLKNQEIDITRNEAILLEMLMKNYPRVVSREVLLNKL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
           +   +  V++N +  + +++RKKL+     + +++ R +GY   I W+
Sbjct: 184 WD-SESYVDDNTLSVNTTRVRKKLKTLHIENAIETIRSVGYRLHITWD 230


>gi|60679763|ref|YP_209907.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis NCTC 9343]
 gi|60491197|emb|CAH05945.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis NCTC 9343]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL + IRA +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELCKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRKL 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             V++   E     +  +  D  V+  G    L  +E  +L Y++ N  K V++  I   
Sbjct: 122 AVVTDVEEELNYADLSVNLLDKSVKRAGRDIKLSPKEYNLLVYMIENAEKVVSRMDIADK 181

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++   FD     N ++ +I+ LRKK+        + +K  +G+
Sbjct: 182 VWNTHFDTGT--NFIDVYINYLRKKIDRDFDTKLIHTKTGMGF 222


>gi|53724716|ref|YP_102097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121599835|ref|YP_993967.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|126449442|ref|YP_001079600.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|254203780|ref|ZP_04910140.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|52428139|gb|AAU48732.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121228645|gb|ABM51163.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|126242312|gb|ABO05405.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147745292|gb|EDK52372.1| DNA-binding response regulator [Burkholderia mallei FMH]
          Length = 247

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q
Sbjct: 119 -----GAGGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 219


>gi|332669831|ref|YP_004452839.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338869|gb|AEE45452.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 213

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 11/203 (5%)

Query: 23  GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGI 78
           G+S EGF    + + E  LQ +   D  AI   ++       ++   +RA   + P++ +
Sbjct: 15  GLSAEGFAVDVAHDGEAGLQLALEHDYDAIVLDIMLPRRNGYDVVTALRAQDVRTPVLLL 74

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDG 137
           S         D  D G DD + KP     ++AR+ A+ RR  +V       G + +    
Sbjct: 75  SAKDGEYDVADGLDVGADDYLTKPFAFVVLVARLRALLRRPPQVRPAVLAVGDLVLDPAA 134

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R     GE   L  RE  +LEYLM +  + V K ++   ++    E V  NVVE ++  L
Sbjct: 135 RTVTRAGEPVVLTVRELALLEYLMRHADRVVGKVELRDHVWEGTGEDV--NVVEVYVGYL 192

Query: 198 RKKLRNKLGFDPVDSKRFLGYSI 220
           R+    KLG D V + R  GY +
Sbjct: 193 RR----KLGRDAVATVRGAGYRV 211


>gi|319938297|ref|ZP_08012694.1| two-component system response regulator [Coprobacillus sp. 29_1]
 gi|319806590|gb|EFW03248.1| two-component system response regulator [Coprobacillus sp. 29_1]
          Length = 224

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 3/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           ++    +P+I ++        L  F  G+DD V KP    E+LARV  I +R  + S N 
Sbjct: 68  MKEFKDIPVIMLTAKSQSADKLRGFSLGIDDYVTKPFDPDELLARVKTILKRYSINSQNI 127

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            +   +    D  +     E   LP ++  +   L  N  +   + Q+   I+G+ D   
Sbjct: 128 VQIQDVIFDGDKYEIRYHDETLHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM-DYDG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  V+ HI ++R+ L +  GF  V + R LGY I+
Sbjct: 187 FDRTVDVHIKRIRENLGHLPGFKVV-TVRGLGYKIE 221


>gi|319948078|ref|ZP_08022248.1| response regulator receiver [Dietzia cinnamea P4]
 gi|319438251|gb|EFV93201.1| response regulator receiver [Dietzia cinnamea P4]
          Length = 192

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 13/153 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  S   ++ ++       TL     G DD + KP   RE++AR+  + RR +
Sbjct: 17  VEVCRQLRTFSDAYVVMLTARTEEVDTLIGLSVGADDYMTKPFSPRELMARIQVMLRRPR 76

Query: 121 VSNN-RAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            S   R+ +           G + +  +GR+  V      L R E  +L  L  + G  +
Sbjct: 77  SSTALRSPSAASEHRELRRIGALAIDVEGREVTVDTTPVQLTRTEFDLLAALTRDPGLVL 136

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++TQ+ SAI+G  D   + ++V+ HI+ LR+KL
Sbjct: 137 SRTQLISAIWG-PDWVGDTHLVDVHIAHLRRKL 168


>gi|312132711|ref|YP_004000050.1| protein [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773672|gb|ADQ03160.1| Hypothetical protein BBMN68_440 [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 234

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 28/172 (16%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------- 119
           +R  +  P++ +S     +  +   D+G DD V KP+   E+LAR+ A+ RR+       
Sbjct: 66  VRGWTDAPILVVSGRTDAREKVAVLDAGADDYVTKPVSIDELLARIRALARRIPQKTETP 125

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V+ + +     RV+  GR   V+     L   E ++LE L+ N G+ V +  + 
Sbjct: 126 MVSFGNVTVDLSAHAVFRVYH-GRKVRVR-----LTPTEWKVLEILVRNAGRLVTRKDLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
           + I+G  +   +   +  ++S+LRKK+ +    DP     + +++ +GY +D
Sbjct: 180 AGIWG-AEHVNDSGYLRLYVSQLRKKIED----DPSRPKYLKTEQGMGYRLD 226


>gi|307308836|ref|ZP_07588524.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|306900641|gb|EFN31253.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 225

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D G DD + KP    E  ARV  + RR   +  +    G + +    R     G    +
Sbjct: 91  LDLGADDYLIKPFDIGEFEARVRVLLRRQAGLRASVVSYGNVSLDLTSRSFSSAGMPIEI 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P RE  +LE L    GK VAK  I  ++ GL D+ +  N +E ++S+LRK+L    G   
Sbjct: 151 PARELGLLELLFMRAGKVVAKDAIVQSLTGL-DDDLSPNAIEQYVSRLRKRL-APFGL-T 207

Query: 210 VDSKRFLGYSID 221
           V + R +GY +D
Sbjct: 208 VRTARGIGYYLD 219


>gi|295704021|ref|YP_003597096.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801680|gb|ADF38746.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 90/191 (47%), Gaps = 13/191 (6%)

Query: 28  GFNSLEFEE------WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           GF  ++FE       +L    + D+  ++  +    E   E+ + +R  S +P+I ++  
Sbjct: 25  GFTCIKFERGTEALRYLYEGNKADLMLLDIMM--PSEDGWEICQKVRKMSDLPVIMLTAR 82

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140
                 +   + G DD + KP    E++AR++A+ RR LK  N     G +    D    
Sbjct: 83  SQTLDVVKGLNMGADDYITKPFSEEELVARISAVLRRSLKEKNEITYKGLVWSKED-HVL 141

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           + + +   +  +E  ++  L+ +  +  ++  +   ++G ++  + +  ++SH+  +R K
Sbjct: 142 QYKNQYIQVTPKEFELVGLLLQHLNRVFSRDDLLVLVWG-YEAEIGDRTIDSHVRNVRDK 200

Query: 201 LRNKLGFDPVD 211
           LR K GF PVD
Sbjct: 201 LR-KAGF-PVD 209


>gi|315506484|ref|YP_004085371.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315413103|gb|ADU11220.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 238

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 8/119 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFSDGRDPEVQGE 145
            + G DD V KP   RE++ R+ ++ RR     +R  TG +R       +D R  E  G+
Sbjct: 99  LEVGADDYVTKPFSPRELVLRIRSVLRR-AAPQDRGPTGVLRDGDLTADTDRRVAERGGQ 157

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
              L  RE  +L +L+AN G+  ++ ++   ++G      +++ V  H+ +LR+K+ ++
Sbjct: 158 PLSLTVREFDLLAFLLANPGRAWSRAELLDRVWGW--RFGDQSTVTVHVRRLREKIEDR 214


>gi|260665127|ref|ZP_05865977.1| DNA-binding response regulator [Lactobacillus jensenii SJ-7A-US]
 gi|260561181|gb|EEX27155.1| DNA-binding response regulator [Lactobacillus jensenii SJ-7A-US]
          Length = 223

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG-EVFPL 149
            D G DD + KP   +E+LAR+ +  RR + + N  +     +F D  + E+       L
Sbjct: 91  LDDGADDYLTKPFSLKELLARLRSKERR-EDNYNTKKMQLANLFLDVENQEISSRNSVRL 149

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             +E  +L+YL+ N+ K ++   IFS ++   D    EN+V  ++S LR+KL+
Sbjct: 150 STKETELLQYLLLNKDKFLSTQTIFSHVWK--DSEENENIVWIYVSYLREKLK 200


>gi|167566789|ref|ZP_02359705.1| DNA-binding heavy metal response regulator [Burkholderia
           oklahomensis EO147]
 gi|167573865|ref|ZP_02366739.1| DNA-binding heavy metal response regulator [Burkholderia
           oklahomensis C6786]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 27/222 (12%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           R L + G++  +  DG+S  G + L+ E +       D++ ++  L G  G  V+   R 
Sbjct: 18  RGLTEAGFVCDWTQDGIS--GLHQLQTENY-------DLAILDVMLPGCDGWTVV---RE 65

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R   + P++ ++    +   +   + G DD + KP    E+LARV ++ RR      +A
Sbjct: 66  LRRTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR-----GQA 120

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              P+   ++       R    QG    L  +E  +L  LM  +G+ + ++ I S I+ +
Sbjct: 121 TDAPVLRVANLELDLIQRKARRQGNTILLTAKEFLLLWLLMRRQGEILPRSLIASQIWDI 180

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   + NVV++ I ++R K+        + + R +GY ++
Sbjct: 181 NFDS--DSNVVDAAIKRVRAKVDQDYEPKLIHTVRGMGYVLE 220


>gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis]
 gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus
           faecalis 62]
          Length = 236

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 11/118 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LAR+ AI+RRLK +                G IRV     +  V+
Sbjct: 95  GADDYLTKPFSPREVLARMKAIFRRLKPTTTETLQEDTPKAPLVIGEIRVDEQNYEVFVR 154

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +   L  +E  +L Y M  + + + +  +   I+  +D A +  +V+ HIS LR K+
Sbjct: 155 NQPIELTPKEFELLVYFMKRKDRVINRETLLERIWQ-YDFAGQSRIVDVHISHLRDKI 211


>gi|85814041|emb|CAF31457.2| putative two-component system response regulator [Micromonospora
           echinospora]
          Length = 231

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R++RA S VP+I  +        +   D+G DD V KP    ++ ARV A+ RR   
Sbjct: 62  ELLRMLRAVSPVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARVRAVLRRAAS 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++    G +RV    R   + G    L  RE  +L +L A  G+ V K ++ + +
Sbjct: 122 VAGADDSALVVGGLRVDPRSRQVTLDGAPVELTPREFDLLHHLAARPGEVVTKRELLTDV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           + +     ++  V+ H+S LR+KL
Sbjct: 182 WQIPYGGADKT-VDVHLSWLRRKL 204


>gi|332522465|ref|ZP_08398717.1| putative response regulator protein GraR [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332313729|gb|EGJ26714.1| putative response regulator protein GraR [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 221

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           IR +   P+I IS        +   + G DD + KP     + A++ A  RR+ + + + 
Sbjct: 69  IRKYLTTPIIFISSSNDEMDAVMALNMGGDDYITKPFSLTILDAKITAFLRRVNQFATDS 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                 ++  DG   +   ++F  P  E +IL  L+ N+   V+K +I  A++   D+ +
Sbjct: 129 LSYKGYQLHFDGSLTKNDWKIFLSP-TEHKILSLLLTNQETIVSKEKILKALWE-SDQFI 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++N +  ++++LRKKL + + F+ + + R +GY
Sbjct: 187 DQNTLNVNMTRLRKKLTD-IDFNYIHTVRGVGY 218


>gi|330875656|gb|EGH09805.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 249

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 71  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 130

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 131 QTILRR--VRDERSDQRSTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 188

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 189 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 227


>gi|328471931|gb|EGF42808.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus 10329]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 20/221 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + L++ GY+     DG+  +G      EE+       D+  ++  L    G +VL   R 
Sbjct: 18  KGLIESGYVVDLVHDGI--DGLYHATSEEY-------DLILLDIMLPKLDGWQVLNTLRS 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
              H+  P+I ++    ++  +  F+ G +D V KP    E+LARV  ++R    +   A
Sbjct: 69  SGIHT--PVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHIAAQVVA 126

Query: 127 ETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
               +RV     D         G+   L  +E  +LE LM   G+ +++T I S ++ + 
Sbjct: 127 SPQTLRVADLELDMIKRVASRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIASLVWDMN 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + NV++  + +LR K+        + + R +GY ++
Sbjct: 187 FDS--DTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLE 225


>gi|239942982|ref|ZP_04694919.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239989442|ref|ZP_04710106.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 236

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 12/179 (6%)

Query: 34  FEEWLQSSAREDVSAIEAF---------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           FE  +  +    V+ +E F         ++  G  +    R+  +    P++ ++   + 
Sbjct: 26  FETAVAGTGGAAVAQVETFRPHLIVMDVMLPDGSGIDATRRLRGSGCLAPVVFLTARDAT 85

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPEV 142
           +  +     G DD V KP    E++AR+ A+ RR      RA+     + +  D  +   
Sbjct: 86  EDKIAGLTVGGDDYVTKPFSLEELIARIRAVLRRTAHPAERAKVTFADLEIDDDAHEVRR 145

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            G    L   E ++L YL+A+ G+ ++K QI   ++  +D    + VV+++IS LR+K+
Sbjct: 146 HGVPVDLTPTEFKLLRYLVAHAGRVLSKRQILDHVWE-YDFGGSDAVVQTYISYLRRKI 203


>gi|229014033|ref|ZP_04171157.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228747289|gb|EEL97168.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 242

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 97/208 (46%), Gaps = 12/208 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G   E   +++ EE L+   + DV  I   ++      +
Sbjct: 15  ILIVDDEKEIRKLIAIYLKNEG--YEVLQAVDGEEGLEIVKKRDVHLIVLDIMMPKIDGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR +K
Sbjct: 73  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +S          E G I++    R   +  E   L  RE  +LE L  N+G  +   QI+
Sbjct: 133 MSGTSVKDESVFEVGDIKINIVTRQVIIANEEVKLTPREFEVLELLARNQGMVLNAAQIY 192

Query: 175 SAIYGLFDEAVE-ENVVESHISKLRKKL 201
             ++   ++A + +N V  HI K+R+K+
Sbjct: 193 ERVWK--EQAFQSDNTVMVHIRKIREKI 218


>gi|213691891|ref|YP_002322477.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523352|gb|ACJ52099.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 221

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 3/126 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD + KP    E+ ARV A  RR +   + + T   I++    ++  V     PL + 
Sbjct: 93  GADDYLTKPFRIAELRARVHAHLRREQRERHVSLTFDRIKIDLSAKELLVDNIPVPLTKS 152

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  I EYL  NRG+  +K QI+ A++  +    + + + +HI  +R K     G  P+ +
Sbjct: 153 EYLICEYLAGNRGQVFSKKQIYEAVFPFYGYG-DGSTISTHIKNIRSKFEEA-GVQPIVT 210

Query: 213 KRFLGY 218
              +GY
Sbjct: 211 VWGIGY 216


>gi|160873420|ref|YP_001552736.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|160858942|gb|ABX47476.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315265649|gb|ADT92502.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 225

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 108/224 (48%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D A   D  +  F + G ++E  +       L +S++ D+  ++  L    G K+
Sbjct: 3   ILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQLDGLKL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L   R     +Q P++ +S    +   +    +G DD + KP    E+L R   +  R  
Sbjct: 63  LAALRA--TGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQ 120

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + V+ +    G +++    R+  + G+   L  +E ++L+YLM +  + +++T +F A+
Sbjct: 121 SVPVTTDLV-VGGLKMELLTRNVTLDGQELLLQPKEFQLLKYLMEHANQVISRTLLFEAV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   FD     NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 180 WDYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|27467345|ref|NP_763982.1| two-component response regulator [Staphylococcus epidermidis ATCC
           12228]
 gi|57866221|ref|YP_187908.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A]
 gi|251810084|ref|ZP_04824557.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874885|ref|ZP_06283760.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293368109|ref|ZP_06614741.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81675285|sp|Q5HR81|GRAR_STAEQ RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|81843063|sp|Q8CQ37|GRAR_STAES RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|27314888|gb|AAO04024.1|AE016745_123 two-component response regulator [Staphylococcus epidermidis ATCC
           12228]
 gi|57636879|gb|AAW53667.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A]
 gi|251806428|gb|EES59085.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296213|gb|EFA88732.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291317799|gb|EFE58213.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725250|gb|EGG61738.1| response regulator protein GraR [Staphylococcus epidermidis VCU144]
 gi|329733351|gb|EGG69686.1| response regulator protein GraR [Staphylococcus epidermidis VCU045]
 gi|329734040|gb|EGG70359.1| response regulator protein GraR [Staphylococcus epidermidis VCU028]
          Length = 224

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 21/204 (10%)

Query: 16  IALFGDDGVSLEGFNSLEFEEW-LQSSAREDVS-AIEAFLIGKGEKVL---ELP------ 64
           I L  DD    +     E E+W       ED S  +E F     E V+   +LP      
Sbjct: 3   ILLVEDDNTLFQELKK-ELEQWDFNVVGVEDFSHVMETFETFNPEIVILDVQLPKYDGFY 61

Query: 65  --RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
             R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+   
Sbjct: 62  WCRKMRQQSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEF 121

Query: 121 -VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V   R  +         +D  +   +   L + E  ILE L+  R + V +  + +A++
Sbjct: 122 GVEEKRTLSWQDATVDLSKDSIQKDDKTIFLSKTEMIILEMLINKRNQIVTRDTLITALW 181

Query: 179 GLFDEA-VEENVVESHISKLRKKL 201
              DEA V +N +  ++++LRKKL
Sbjct: 182 D--DEAFVSDNTLTVNVNRLRKKL 203


>gi|325293818|ref|YP_004279682.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325061671|gb|ADY65362.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 232

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D G DD + KP    E  ARV  + RR   + ++    G +      R     G    +
Sbjct: 97  LDLGADDYMIKPFDITEFEARVRVLLRRNAGLRSSTLSFGKVLFDLTSRTFSADGRPLDI 156

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P RE  +LE L    GK VAK  I  ++ G FD+ +  N +E ++S+LR++L    G   
Sbjct: 157 PAREVALLEVLFMRAGKVVAKEAIVQSLTG-FDDEISGNAIEQYVSRLRRRLAPH-GL-T 213

Query: 210 VDSKRFLGYSID 221
           V + R +GY ++
Sbjct: 214 VKTARGIGYYLE 225


>gi|224543110|ref|ZP_03683649.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523897|gb|EEF93002.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM
           15897]
          Length = 234

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S  P++ +S        +     G DD V KP   +EI  RV A  RR + 
Sbjct: 65  EVCKKIREISHCPILFLSSKNDELDKILGLAVGGDDYVTKPFSPKEIAYRVKAQLRRAEY 124

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             N  +      G + + +DG       +   L  RE  IL+YL  N G+ +++ +++  
Sbjct: 125 KYNPKQDFSVRIGELMIDADGCRVMKNNKEIELTAREFEILQYLAQNVGRVISRERLYET 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G  D    +N +  HI  LR+KL  N      + + + LGY +
Sbjct: 185 VWG-EDSFGCDNTIMVHIRHLREKLEDNPTAPQYIITMKGLGYKL 228


>gi|134093754|ref|YP_001098829.1| two-component regulatory system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133737657|emb|CAL60702.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Herminiimonas arsenicoxydans]
          Length = 229

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 7/167 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++L   R  R    +P+I ++     +  +   ++G DD V KP   RE++ARV  + 
Sbjct: 64  GLQLLSRVRESRQFRGLPIIMLTAKSMEEDKVTGLENGADDYVTKPFSPRELIARVTVLL 123

Query: 117 RRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  KV  +  ET   GPIR+    R   V  +   +   E ++L+YL+A+     ++ Q+
Sbjct: 124 KH-KVPEHAQETMKAGPIRLDPASRMVSVGTKNITIGHAEFKLLKYLLAHPNHVYSRDQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G    A++E  V+ ++ +LRK L    G   + + R +GY +
Sbjct: 183 IDRVWGRHI-AIDERTVDVNVLRLRKVLGE--GRYLIKTVRGVGYML 226


>gi|159044087|ref|YP_001532881.1| phosphate regulon transcriptional regulatory protein
           [Dinoroseobacter shibae DFL 12]
 gi|157911847|gb|ABV93280.1| phosphate regulon transcriptional regulatory protein
           [Dinoroseobacter shibae DFL 12]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 3/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I +S        +   ++G DD V KP    E++ARV A  RR++ +    +     
Sbjct: 79  IPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRVRPATVGQQLRYDD 138

Query: 133 VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +  D     V    +   L   E R+L   M   G+  ++ Q+   ++G  D  V+   V
Sbjct: 139 ILLDAESHRVFRDDQALKLGPTEFRLLATFMEKPGRVWSREQLLDRVWG-RDIYVDTRTV 197

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + HI +LRK L    G DPV + R  GY++
Sbjct: 198 DVHIGRLRKALCQHGGTDPVRTVRGAGYAL 227


>gi|150017893|ref|YP_001310147.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904358|gb|ABR35191.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 238

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 17/151 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+  I+R  S+VP+I ++     ++ +     G DD + KP   RE++AR+ AI+RRL  
Sbjct: 65  EICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRLN- 123

Query: 122 SNNRAETGPIR---VFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E  P+     F+D         ++    GE   L  R+ +IL  L+    K   +
Sbjct: 124 ----EEVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++ S   G   +  + N V++H+  +R+K+
Sbjct: 180 EELISTALGDDYDGYDRN-VDTHVKNIRQKI 209


>gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
 gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
          Length = 233

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 18/175 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +E+ R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  
Sbjct: 58  GNDGMEVCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 117 RR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           RR        +  + N      I ++ D    + +GE   L  RE  +  YL  + G+ +
Sbjct: 118 RRHYSQPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVM 177

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            +  +   ++G +D   +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 178 TREHLLQTVWG-YDYFGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227


>gi|300853321|ref|YP_003778305.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300433436|gb|ADK13203.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 67/117 (57%), Gaps = 6/117 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVFS--DGRDPEVQGEV 146
            D G DD + KP     +++++ A+ RR    N   +  +G I VFS  D +  + + E+
Sbjct: 91  LDMGADDYIAKPFSLMVLMSKINALLRRNSNKNQSKKIVSGDI-VFSITDMKVLKNEEEL 149

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           F L + E ++L+YLM N G+ + K Q+ + ++ + +  V++N +  +I +LR+K+ +
Sbjct: 150 F-LSKTEIKLLKYLMDNAGQIITKDQLLNKLWDIDNTFVDDNTIAVNIRRLREKIED 205


>gi|300702865|ref|YP_003744466.1| response regulator, chey family [Ralstonia solanacearum CFBP2957]
 gi|299070527|emb|CBJ41822.1| putative response regulator, CheY family [Ralstonia solanacearum
           CFBP2957]
          Length = 235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 28/222 (12%)

Query: 8   RALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSS--AREDVSAIEAFLIGKGEKVLELP 64
           RAL +  ++     DG++ E F  S EF+  +      R+D  A+ A +  + ++     
Sbjct: 18  RALAQSSFVVERAADGLAAEAFLASGEFDAVVLDLRLPRKDGFAVLADMRARDDRT---- 73

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
                    P++ ++   +L   +   ++G DD + KP    E+ AR+ A+ RR   S  
Sbjct: 74  ---------PVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIRR---SRG 121

Query: 125 RA----ETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           RA      GP+  F  GR    + GE   L  RE   L  L+   G+ ++K  +F  ++ 
Sbjct: 122 RAFPRLRCGPLE-FDTGRKAFLLAGEALSLTPREHAALSALLHKTGQPISKVHLFDKVFN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L D     + VE  + +LRKKL    G   V + R LGY ++
Sbjct: 181 L-DSDSSPDAVEVVVHRLRKKLAGS-GVQIV-TVRGLGYLLE 219


>gi|292488960|ref|YP_003531847.1| sensory transduction protein regX3 [Erwinia amylovora CFBP1430]
 gi|292900097|ref|YP_003539466.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291199945|emb|CBJ47069.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291554394|emb|CBA21833.1| Sensory transduction protein regX3 [Erwinia amylovora CFBP1430]
 gi|312173122|emb|CBX81377.1| Sensory transduction protein regX3 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 27/222 (12%)

Query: 10  LVKDGYIA---LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           L+ +G+ A   L G  GV  +G  S ++   +      D+S I+              R 
Sbjct: 20  LIAEGFAASLVLTGKAGV--DGALSGDYHAMILDIMLPDMSGIDVL------------RQ 65

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSN 123
           +R H ++P+I ++        +   + G DD + KP + RE++AR+ A+ RR++   V+ 
Sbjct: 66  VRQHGRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRVEEQPVAK 125

Query: 124 NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              E    G +R+    R  E Q + F L   E  +L+ L+ +  + V+K ++     G 
Sbjct: 126 KNKEVIVWGELRLNPATRISEWQNKPFDLTASEFNLLDLLLRSAERVVSKDELSEKGLGR 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSI 220
             EA + + V+ HIS +R+KL   L  D   +++ R +GY I
Sbjct: 186 PREAYDRS-VDVHISNIRQKLAG-LTNDTIAIETVRSIGYRI 225


>gi|288961886|ref|YP_003452196.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288914166|dbj|BAI75652.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 103/238 (43%), Gaps = 34/238 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   ++D  I  F    +  EGF  +E  + +Q  A     + +  L+  G   +
Sbjct: 4   ILLIDDDPHIRD--IVRFA---LKREGFAVVEAGDGVQGLALAQADSPDLILLDIGMPEI 58

Query: 62  ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R +R  S+VP+I +S        +   + G DD V KP   RE+ ARV A+ RR
Sbjct: 59  DGTEVCRRLRRESRVPIIFLSSRDDEIDRILGLELGGDDYVTKPFSPRELTARVKAVLRR 118

Query: 119 ---------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
                          L+ +  R +   +R F D  +  +    F L R         +A+
Sbjct: 119 VVPPEPPVPEGPAPVLRNNRLRLDLDGVRAFWDEMEVVLTATEFCLLR--------TLAD 170

Query: 164 R-GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           R GK  ++  +    Y   +  V +  V+SHI ++R K    +G  PV++   LGY +
Sbjct: 171 RPGKVFSRDALMDGTYAT-ERYVADRTVDSHIRRVRAKF-QAVGGAPVETVHGLGYKL 226


>gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator
           [cyanobacterium UCYN-A]
 gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family
           [cyanobacterium UCYN-A]
          Length = 243

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++  +N  
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKGSNPG 130

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      +++ ++ R      E   L   E  +LE L+   G+  ++++I   ++G
Sbjct: 131 IPNSGVISIASVKIDTNKRQVYKGDERIRLTGMEFSLLELLVGCSGEPFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|254495848|ref|ZP_05108760.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
 gi|254355005|gb|EET13628.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
          Length = 247

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 102/212 (48%), Gaps = 15/212 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD+ +V+     L  +D  +    N L  ++ L+ +   D+  ++  L   G   
Sbjct: 13  ILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDN-NFDLIILDIML--PGIDG 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L ++IR    +P+I +S   S+   +   + G DD ++KP   RE+LARV A  RR +
Sbjct: 70  LDLCQMIRQTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRTQ 129

Query: 121 --VSNNRAETGPIR-----VFSDGRDP----EVQGEVFPLPRRERRILEYLMANRGKRVA 169
             +S  R +  P++     ++   R+     +      PL +RE  +L   + + G+ + 
Sbjct: 130 GDLSKERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLLIFLEHPGRILN 189

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + Q+   +Y   D   ++  ++  I +LRKK+
Sbjct: 190 RDQLMDLLYD-KDCDSQDRTIDVLIGRLRKKI 220


>gi|239624688|ref|ZP_04667719.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521074|gb|EEQ60940.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 234

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 17/213 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +  F +      L+  A+ED+  +   ++  G   L
Sbjct: 6   ILVVDDEKEIADLIEIYLVSDGYKV--FKAENAARGLEILAKEDIHLVLLDIMMPGMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR ++ +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCKKIRENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSHLRRYTQ 123

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     +NN      + +  D     V  E   L   E  IL  L +N GK  +  
Sbjct: 124 LNPNSASQDKANNEITIKGMIINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGKVFSTD 183

Query: 172 QIFSAIYGLFDEAVEE--NVVESHISKLRKKLR 202
           +IF  ++   +E V E  N V  HI +LR K++
Sbjct: 184 EIFERVW---NEKVYEANNTVMVHIRRLRGKMK 213


>gi|167552258|ref|ZP_02346011.1| DNA-binding response regulator [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205323070|gb|EDZ10909.1| DNA-binding response regulator [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 222

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILTAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHNN 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L V N     G  + + DG++         L  +E  +L  LM   G  V +  +
Sbjct: 122 QGESELTVGNLTLNIGRHQAWRDGQE-------LTLTPKEYALLSRLMLKAGSPVHREIL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ IY  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 175 YNDIYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|150015325|ref|YP_001307579.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901790|gb|ABR32623.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 231

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 18/166 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           +RA S +P+I I+   +    +     G DD + KPI   E+ ARVA+  RR  K + ++
Sbjct: 66  VRAISTIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCYKYAEHK 125

Query: 126 ---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                TG +++F++  +         L  +E +IL+ L++N GK   K QI+  ++   +
Sbjct: 126 DIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQIYEEVW---E 182

Query: 183 EAV--EENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
           EA   + N +  H+S +R+K+ +    DP     + + R +GY I+
Sbjct: 183 EAYFGDSNNIMVHLSHIREKIED----DPKNPIYIKTIRGIGYKIE 224


>gi|126651967|ref|ZP_01724159.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591236|gb|EAZ85345.1| two-component response regulator [Bacillus sp. B14905]
          Length = 237

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 23/222 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+K+GY  +   DG   E    +E E+        D+  ++  L  +    +E+ R IR 
Sbjct: 22  LIKEGYKVICAYDGD--EALKKVEEEQ-------PDLMLLDIMLPKRDG--MEVCREIRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-------- 121
               P+I ++   S    +   + G DD V KP   RE++ARV A  RRL+V        
Sbjct: 71  KYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQVAAPAAEEA 130

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N    G + +  D      + E   L  RE  +L YL  + G+ + +  +   ++G
Sbjct: 131 EEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTREHLLQTVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +D   +   V+  I +LR+K+ +       + ++R +GY +
Sbjct: 191 -YDYFGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYL 231


>gi|16118480|gb|AAL14442.1|AF370885_4 AdeR response regulator [Acinetobacter baumannii]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR     KV+
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKVT 137

Query: 123 NNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N       I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLR 202
            + D    E  V+SH+SKLRKKL+
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLK 219


>gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 242

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV---- 121
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR  KV    
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRFDKVGAAG 130

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G I++ ++ R      E   L   E  +LE L+   G+  ++++I   ++G
Sbjct: 131 IPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVRRSGEPFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|325845482|ref|ZP_08168773.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Turicibacter sp. HGF1]
 gi|325488501|gb|EGC90919.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Turicibacter sp. HGF1]
          Length = 233

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 18/153 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R +R   + P+I +S       TL   + G DD + KP    E++ARV A  RR K
Sbjct: 62  LELCRRVRDQLKAPIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRREK 121

Query: 121 VSNNRAETGPIRVFSD-----------GRDPEVQGEV-FPLPRRERRILEYLMANRGKRV 168
               R +   I    D            R    + EV   L  RE ++ +Y + N G+ +
Sbjct: 122 ----RHQMNAIESLQDVLPFDRFKLYLNRYEVFKDEVNIDLSPREFQLFQYFVENSGRVL 177

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ QIF AI+G  +   +   V  +I  LR+KL
Sbjct: 178 SREQIFDAIWG--ENYGDIGTVAVNIKNLRQKL 208


>gi|310829043|ref|YP_003961400.1| hypothetical protein ELI_3478 [Eubacterium limosum KIST612]
 gi|308740777|gb|ADO38437.1| hypothetical protein ELI_3478 [Eubacterium limosum KIST612]
          Length = 220

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 85/161 (52%), Gaps = 5/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++   S    L   + G DD + KP + + +LAR+A++ +R   S
Sbjct: 62  ICREIRKQSDVPIIIVTSRDSEFDELMSMNLGADDYITKPYNTQILLARIASVLKRANPS 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +         +  D     +Q  +    L + E  IL  L++++ + V++  I +A++  
Sbjct: 122 SGSTTMSHNGLTLDLSRSVIQSAIGETELTKNEVGILRLLLSHKNEIVSREAIMNALWQ- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            D  V++N +  +I++LR+K+ +++G  D + +KR  GY +
Sbjct: 181 SDAFVDDNTLTVNINRLRRKI-SEIGLKDYLVTKRGQGYMV 220


>gi|289628083|ref|ZP_06461037.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646706|ref|ZP_06478049.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867466|gb|EGH02175.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 267

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 14/178 (7%)

Query: 39  QSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98
           Q+   E    +   L+  GE  L L R +R+ S +P++ ++        +   + G DD 
Sbjct: 75  QALTEETFDVVVLDLMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDY 134

Query: 99  VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPR 151
           + KP   RE++AR+  I RR  V + R++      F   R   V        G V PL  
Sbjct: 135 MAKPFEPRELVARIQTILRR--VRDERSDQRTTVRFDAWRLNSVLRQLTAADGLVVPLSN 192

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            E R+L   +    + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 193 AEFRLLRVFLERPHRVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 245


>gi|282882390|ref|ZP_06291018.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
 gi|281297811|gb|EFA90279.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
          Length = 227

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 10/144 (6%)

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +RA +  +P+I I+     +T    FD G DD + KP    ++L RV A  RR +  N+ 
Sbjct: 66  MRAKNFNMPVIIITAKIDEKTKFYTFDIGADDFITKPFEKADLLNRVKANIRRYRHLNSN 125

Query: 126 AETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                I      +++ D     ++GE   +   E  IL+ L+ N  K  +K  ++ +++ 
Sbjct: 126 MSKNSILEFKNLKLYEDENRILIKGEELKVTPIEFEILKILLKNPNKIFSKENLYRSVWN 185

Query: 180 LFDEA-VEENVVESHISKLRKKLR 202
             DE   E++ +  HIS LR K++
Sbjct: 186 --DEYFFEDDTINVHISNLRSKIK 207


>gi|213968160|ref|ZP_03396305.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|302058487|ref|ZP_07250028.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato K40]
 gi|213927140|gb|EEB60690.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
          Length = 249

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 71  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 130

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 131 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 188

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 189 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 227


>gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
 gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
          Length = 253

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 12/158 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++      
Sbjct: 79  LRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKEQVAG 138

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + N+   T G +R+ ++ R      E   L   E  +LE L++  G+  ++ +I   ++G
Sbjct: 139 IPNSGVITVGDLRIDTNKRQVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILKEVWG 198

Query: 180 LFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
              E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 199 YTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 232


>gi|206969728|ref|ZP_03230682.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206735416|gb|EDZ52584.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G+   L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATETIEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|152971070|ref|YP_001336179.1| DNA-binding transcriptional regulator BaeR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150955919|gb|ABR77949.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 4/152 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             I RR K   +        P+ V         + ++  L   E R+L+ L    GK  +
Sbjct: 122 KTILRRCKPQRDLQALDARSPLIVDESRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 182 REQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|15839123|ref|NP_299811.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|28199786|ref|NP_780100.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|182682538|ref|YP_001830698.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|9107741|gb|AAF85331.1|AE004060_6 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|28057907|gb|AAO29749.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|182632648|gb|ACB93424.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307578816|gb|ADN62785.1| two component transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 225

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G   +E+ R +R  A  Q P++ ++   SL   L  FDSG DD + KP   +E+  R+ A
Sbjct: 56  GMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNA 115

Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR K    R  ETG +    D  +   +G++  L     +IL+ LM      V +  +
Sbjct: 116 LSRRGKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 175

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G  +E  + + +  HI  LR  +        + ++  +GY I
Sbjct: 176 ETRVWG--EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220


>gi|15896754|ref|NP_350103.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026610|gb|AAK81443.1|AE007848_7 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510923|gb|ADZ22559.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 20/213 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSAREDVSAIEAFLIGKG 57
           + V+ DDR +VK           +S EGF  +     +E L +     +  I   ++  G
Sbjct: 5   ILVVDDDRDIVK------LITKSLSYEGFEMISAYSGKEALCALKENHIDFIILDIMMPG 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              L++ R IR    VP++ +S        +   + G DD + KP   +E+ +R+ A +R
Sbjct: 59  MDGLDVCRSIRKSYNVPILFLSARDKDIDKIVGLEIGADDYMAKPFSIQELTSRIRANFR 118

Query: 118 RL--------KVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           ++        ++S NR       + +D   +  +      L  +E +IL  L+ N    +
Sbjct: 119 KIDRLFKEWNELSPNRERNDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLVHNPNNVL 178

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            + QI+  ++G  DE  E N V  HI  +RKKL
Sbjct: 179 TREQIYEHVWG--DEYGELNTVTVHIKNIRKKL 209


>gi|38505865|ref|NP_942483.1| two-component response regulator [Synechocystis sp. PCC 6803]
 gi|38423889|dbj|BAD02097.1| two-component response regulator [Synechocystis sp. PCC 6803]
          Length = 232

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 16/167 (9%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LEL + +R   S +P++ ++    +   ++  D+G DD + KP    E+LAR+ ++ RR 
Sbjct: 62  LELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRRS 121

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+V + R + G   V +    P+ Q     L  +E ++LEY M +  + ++  
Sbjct: 122 PELQPQQLQVGDWRLDYGTFVVVT----PDKQQ--ISLTAKEFQLLEYFMKHPQQILSSE 175

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           QI + ++ L  E+   NVV + +  LR+KL      + +++   LGY
Sbjct: 176 QIKNQLWALSAEST-SNVVAAQVRLLRRKLGEYSHGNLIETVYGLGY 221


>gi|330965379|gb|EGH65639.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 249

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 71  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 130

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 131 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 188

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 189 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 227


>gi|329927392|ref|ZP_08281651.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328938531|gb|EGG34916.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 235

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  +  P++ +S   S    +     G DD + KP    E++ARV A  RR+ 
Sbjct: 64  IEVCRELRTLTSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMA 123

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +A T      G + +    R          L  +E  +L +L +N  +   KTQ+ 
Sbjct: 124 DPKLQAATQQLLRFGTLSIDKSARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G +   VE+N +  +I +LR+KL
Sbjct: 184 DQVWG-YSAYVEDNTITVYIRRLREKL 209


>gi|323483016|ref|ZP_08088410.1| hypothetical protein HMPREF9474_00159 [Clostridium symbiosum
           WAL-14163]
 gi|323691539|ref|ZP_08105808.1| hypothetical protein HMPREF9475_00670 [Clostridium symbiosum
           WAL-14673]
 gi|323403645|gb|EGA95949.1| hypothetical protein HMPREF9474_00159 [Clostridium symbiosum
           WAL-14163]
 gi|323504433|gb|EGB20226.1| hypothetical protein HMPREF9475_00670 [Clostridium symbiosum
           WAL-14673]
          Length = 242

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 14/171 (8%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AA 114
           +G   +E+ R IR    VP+I +S   +    ++   +G DD + KP    E+LARV A 
Sbjct: 71  QGMDGVEVCRRIRKQGNVPIIMLSANAASFDKVEALGAGADDYIVKPFDPVELLARVRAH 130

Query: 115 IYRRLKVSNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           I R  +   +R    PI     +++          E   L   E R+L YL+ +    V+
Sbjct: 131 IGRTERFKASRTMETPIEFDGYKIYRSAYRVTKDDEEIRLSNTEFRLLLYLVDHAFNAVS 190

Query: 170 KTQIFSAIY--GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + QI   ++   L+D    EN+V ++I +LR KL    G+  + S R +GY
Sbjct: 191 RKQILVDVWESDLYD----ENIVNTYIKRLRLKLGVGEGY--IKSIRSVGY 235


>gi|304569547|ref|NP_441728.2| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 243

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+       
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMPG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKL 201
              E  V+  VV+ HIS+LR KL
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKL 213


>gi|291522756|emb|CBK81049.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 9/205 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ +    + + +E  + + + D   I   ++       E
Sbjct: 6   LVVDDEKLIVKGIKFSLEQDGMEVTA--AYDGKEAYELAMQNDYDIILLDVMLPELNGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + ++IR  S VP+I ++        +   + G DD V KP +  EI AR+ AI RR K  
Sbjct: 64  VCQMIREKSDVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEIKARIKAIIRRTKGR 123

Query: 123 NNR--AE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                AE    +G +R+  D R   +      L  +E  +LE L+ N  K   +  + + 
Sbjct: 124 KQEQPAERTIVSGEMRIDLDSRRVFIGDREVNLTAKEFDLLELLITNPNKVFNRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G +D   +   V+ H+ +LR+K+
Sbjct: 184 VWG-YDYPGDVRTVDVHVRRLREKI 207


>gi|261346104|ref|ZP_05973748.1| QseB protein [Providencia rustigianii DSM 4541]
 gi|282565757|gb|EFB71292.1| QseB protein [Providencia rustigianii DSM 4541]
          Length = 203

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 3/135 (2%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           +A   +P+I ++    +   +   DSG DD + KP    E+++RV AI RR+   S+   
Sbjct: 68  QAGESIPIIILTARNKMDNLVASLDSGADDFLTKPFEMPELISRVKAISRRMAGFSSEIW 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +   +++        +  ++  L  +E  +L  L+ N    V K  +   ++GL D  VE
Sbjct: 128 QLDNLQLNPLNHQVTLNDQLLLLSGKEYLLLFELIKNSDNVVRKADLEQRLFGLDD--VE 185

Query: 187 ENVVESHISKLRKKL 201
            N +E HI  LR+K+
Sbjct: 186 SNSLEVHIHNLRRKI 200


>gi|223043432|ref|ZP_03613478.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|222443221|gb|EEE49320.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
          Length = 233

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 18/175 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +E+ R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  
Sbjct: 58  GRDGMEVCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 117 RR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           RR        +  + N      I ++ D    + +GE   L  RE  +  YL  + G+ +
Sbjct: 118 RRHYSQPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVM 177

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            +  +   ++G +D   +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 178 TREHLLQTVWG-YDYFGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227


>gi|160901173|ref|YP_001566755.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366757|gb|ABX38370.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 342

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNR----AETGPIRVFSDGRDPEVQ----GE 145
           G DD V KP +  E++ARV A+ RR      R     + GP RV  D R+  VQ      
Sbjct: 206 GADDYVGKPFNAAEVVARVQAVLRRCGQGRLRDTKLLQAGPFRVDLDSREVSVQVQGATH 265

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
           V  L   E  +L  L+ +  +  ++ ++   +  L +    E  V+SHISKLRKKL   L
Sbjct: 266 VPELTVTEFNLLASLVRSPRRVFSRAELL--LSCLPEGHTLERTVDSHISKLRKKLEG-L 322

Query: 206 GFDPV-DSKRFLGYSI 220
           G   + DS R +GY +
Sbjct: 323 GLQGMPDSVRSVGYRL 338


>gi|111224393|ref|YP_715187.1| two-component system response regulator [Frankia alni ACN14a]
 gi|111151925|emb|CAJ63647.1| two-component system response regulator [Frankia alni ACN14a]
          Length = 278

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  + +P+I ++        ++  D G DD + KP    E+LAR+ A+ RR        
Sbjct: 63  IRERTDIPVIVVTARGDEADRVEALDLGSDDYLVKPFGFAELLARMRAVRRRTAGRTGGG 122

Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +      GP+ +    R   V G    +  RE  +L +L A+ G+   + +IF+ ++G  
Sbjct: 123 DADLLRHGPLTLDRRSRRITVDGRPVAVTAREYDLLAFLAADPGRVRTRQEIFTGVWG-- 180

Query: 182 DEAVEENVVESHISKLRKKL 201
           D      V++ HI  +R+KL
Sbjct: 181 DWFGSPKVLDVHIGAIRRKL 200


>gi|56418866|ref|YP_146184.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|56378708|dbj|BAD74616.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
          Length = 223

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           +++  G+ V    R+ +      ++ ++   ++Q  +   ++G DD + KP    E++AR
Sbjct: 53  WMLPNGDGVNICSRLRQNGYTGAILMLTAKDAVQDRVTGLEAGADDYLVKPFEIDELVAR 112

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKR 167
           + A+ RR  V   + E      F+  R          E+F  P RE ++L+ L+ N+G+ 
Sbjct: 113 LKALARRTFVP-LQEEKVTFHGFTLNRTSHTLHRGDEEIFLTP-REFQLLDLLVQNQGQV 170

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           V +  I   ++G +D  V    +++ I  LRKKL++    D + + R +GY ID
Sbjct: 171 VPRETILDRVWG-WDADVSMKTIDATIKLLRKKLKD----DVIQTVRGVGYKID 219


>gi|332139945|ref|YP_004425683.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549967|gb|AEA96685.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 247

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 7/136 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQG 144
            + G DD + KP +HRE++AR+ AI RR  +S++            I +    +  +V  
Sbjct: 108 LEMGADDYLPKPFNHRELVARIKAIVRRHNLSSSGGAVEQDLFVNGILLSPSSQLAKVDD 167

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
               L   E  IL  LM N  +RV K +I   I G   +A + + ++ H+S LRKK+   
Sbjct: 168 VELTLTTTEFLILRLLMLNAAQRVTKEEISLKILGKPLQAFDRS-IDMHVSNLRKKIGAV 226

Query: 205 LGFDPVDSKRFLGYSI 220
              + + + R +GY +
Sbjct: 227 AVDEKIKTIRGVGYML 242


>gi|330973443|gb|EGH73509.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 267

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 89  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPNDRIIGLELGADDYMAKPFEPRELVARI 148

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 149 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 206

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 207 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 245


>gi|322516504|ref|ZP_08069422.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322124973|gb|EFX96387.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S+VP++ +S        +   + G DD V KP     +LA++  + RR        
Sbjct: 67  IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + +     D   QGEV  L + E +IL+ L    G  V++  +   ++   D 
Sbjct: 127 SLLEYRGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERSGNIVSREDLMKELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      + +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEAVGLKEFIETKKGVGYGL 222


>gi|293395031|ref|ZP_06639318.1| response regulator protein OmpR [Serratia odorifera DSM 4582]
 gi|291422438|gb|EFE95680.1| response regulator protein OmpR [Serratia odorifera DSM 4582]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 22/215 (10%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +  + L G  GV  EG  S E+   +      D+S I+              R +R  S+
Sbjct: 26  NASLVLTGKAGV--EGALSGEYTAMILDIMLPDMSGIDVL------------RDVRKKSR 71

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----- 127
           +P+I ++        +   + G DD V KP + RE++AR+ A+ RR +      +     
Sbjct: 72  LPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRFEEQPAAVDDDAPL 131

Query: 128 -TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +    R  E +G+ F L   E  +LE L+    + V+K ++     G   EA +
Sbjct: 132 VLGELALNPSTRSSEWRGQGFDLTASEFNLLELLLRAPERVVSKDELSEKGLGRPREAYD 191

Query: 187 ENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            + V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 192 RS-VDVHISNIRQKLAALTGNTLSIETVRSIGYRI 225


>gi|289679985|ref|ZP_06500875.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 249

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 71  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 130

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 131 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 188

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 189 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 227


>gi|317152831|ref|YP_004120879.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316943082|gb|ADU62133.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 239

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 13/183 (7%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           +++  R+  S +   ++  G   L++ R IRA S+VP+I ++        +   + G DD
Sbjct: 41  VEAVGRDTPSLVILDVMMPGRNGLDVLRDIRAGSKVPVIMLTAKGEDTDRIVGLELGADD 100

Query: 98  VVNKPIHHREILARVAAIYRRLKVSNN-----RAETGPIRVFSDGRDPEVQGEV------ 146
            + KP + RE+LAR+ A+ RR +          A    + V + G    V   V      
Sbjct: 101 YMPKPFNPRELLARIKAVLRRAETVGTSGGAPSAAQRAVLVEAGGLALNVSRHVLLVDED 160

Query: 147 -FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L   E R+L  LM N    + + ++ S  +G  D +  +  ++ H+SKLR  LR   
Sbjct: 161 ELELSATEFRLLRALMENPDTALTRDELMSLAWG-RDFSAYDRSIDVHVSKLRSLLRPYA 219

Query: 206 GFD 208
           G D
Sbjct: 220 GHD 222


>gi|269926131|ref|YP_003322754.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789791|gb|ACZ41932.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 243

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 15/159 (9%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  I + + ++P+I ++    +Q  L   +SG DD V KP    E++ARV ++ RR   +
Sbjct: 68  LKHIKKQYPEMPVIMLTARAEMQDKLTGLESGADDYVVKPFEPAELVARVKSVLRR--AN 125

Query: 123 NNRAETGPIRVFSDGRD---PEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T  + +  +G +   P++      GE   L   E RIL+ LM++  + V++  + 
Sbjct: 126 RQLAATMDMLIVENGIELNIPDLTAKLPSGEKVTLTPMEMRILQRLMSSPNRVVSRDDLA 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
               G   +    N ++ +I ++RK    KLG DP D K
Sbjct: 186 MYAAGYVAD-TSSNQIDVYIGRIRK----KLGDDPNDPK 219


>gi|225016919|ref|ZP_03706111.1| hypothetical protein CLOSTMETH_00832 [Clostridium methylpentosum
           DSM 5476]
 gi|224950313|gb|EEG31522.1| hypothetical protein CLOSTMETH_00832 [Clostridium methylpentosum
           DSM 5476]
          Length = 258

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 67/141 (47%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L   +R    +P+I ++   + +  +  F++G DD + KP     +  RV A+ RR  
Sbjct: 94  LDLCTQLRRERSLPVIFLTANDTEREIVAGFETGCDDYIAKPFSVPVLKQRVRAVLRRAD 153

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  +G +RV          G+   L   E  +LE L  N+G+ + +  +   ++  
Sbjct: 154 RQETVFSSGALRVDYQRYSVHKDGKPVKLTATEYALLELLTKNKGRVLTRQTLIERLWDC 213

Query: 181 FDEAVEENVVESHISKLRKKL 201
            +  V+EN +  +I++LR+K+
Sbjct: 214 NENFVDENALSVNIARLRRKI 234


>gi|168185485|ref|ZP_02620120.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169296406|gb|EDS78539.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 229

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSN--NRAETGPIRVFSDGR 138
           +  L  F  G DD + KP    E+ AR+ A  RR     ++SN  N      I +  D +
Sbjct: 87  EVKLKLFSLGADDYITKPFDIEELSARIDANIRRYIDFNEISNIENNLVHKDIILNKDTK 146

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EENVVESHISKL 197
           +  V G    L  RE  ILE L+ +  K  +K  +F +++   +E + ++N V  HIS L
Sbjct: 147 EVNVSGNELSLTAREFSILELLLTHPKKVFSKANLFESVWE--NEYLGDDNTVNVHISNL 204

Query: 198 RKKLR 202
           R KL 
Sbjct: 205 RNKLN 209


>gi|218899692|ref|YP_002448103.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218541203|gb|ACK93597.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G    L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLVWNE-EYYGDDNVINVHMRRLREKIES 209


>gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
 gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
          Length = 239

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 13/164 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKV 121
           R+  A    P++ ++     +  +     G DD V KP    E++AR+ A+ RR   L+ 
Sbjct: 75  RLRAAGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQPLED 134

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       + +  D  +    G V  L   E ++L YLM N  + ++K QI   ++  +
Sbjct: 135 DDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE-Y 193

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
           D   + ++VES+IS LR+    K+  DP     + +KR +GY +
Sbjct: 194 DFNGDASIVESYISYLRR----KVDIDPDAAALIQTKRGVGYVL 233


>gi|186472759|ref|YP_001860101.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195091|gb|ACC73055.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 247

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 15/212 (7%)

Query: 22  DGVSLEGFNSLEFEEWLQ--SSAREDVSAI---EAFLIGKGEKVLELPRIIRAHSQVPLI 76
           D +  E FN+   E+  +  +S R +  ++   +  L G+G   LE+ R +R  S VP+I
Sbjct: 28  DYLRAENFNTQVIEDGRKVIASVRANPPSLILLDLMLPGRGG--LEICRELRTFSDVPVI 85

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS- 135
            ++        L   + G DD V KP   RE++ARV AI RR+ +    A  G   V S 
Sbjct: 86  ILTARVDEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRVDLLPGAARAGVEPVASR 145

Query: 136 -----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
                +     + G+   L   E R+L  L +  G+  ++  +   +Y      V +  V
Sbjct: 146 LAIDVERHVASLDGKDLNLTPIETRLLALLNSTPGRIYSRDHLLRQLYD-DHRVVADRTV 204

Query: 191 ESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +SH+  LR+KL+  +   D + S   +GY ++
Sbjct: 205 DSHVKNLRRKLQTVRPDHDMIRSIYGVGYRLE 236


>gi|19553859|ref|NP_601861.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391500|ref|YP_226902.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|145296659|ref|YP_001139480.1| hypothetical protein cgR_2566 [Corynebacterium glutamicum R]
 gi|21325434|dbj|BAC00056.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326842|emb|CAF20686.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846579|dbj|BAF55578.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 241

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 8/167 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IRA +   ++ ++   S +  +   + G DD + KP + RE++ R+ ++ RR +
Sbjct: 73  LEVCKRIRAFTDCYILMLTARGSERDRITGLEIGADDYITKPFNIRELVIRIQSVMRRPR 132

Query: 121 -----VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + N    T G I + +   +  V+G    L R E  +L+ LM   G+ V++  + 
Sbjct: 133 KIDETIQNGLTLTYGHIELDTLAHEVTVKGVGVTLTRTEFELLQALMHKPGEAVSRRDLV 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           S ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 193 SQVWDT-TWVGDERIVDVHIGNLRRKLEAPAPGSHFIDTIRGVGYRM 238


>gi|16265177|ref|NP_437969.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|307320334|ref|ZP_07599752.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15141317|emb|CAC49829.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|306894056|gb|EFN24824.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
          Length = 225

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 4/132 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D G DD + KP    E  ARV  + RR   +  +    G + +    R     G    +
Sbjct: 91  LDLGADDYLIKPFDIGEFEARVRVLLRRQAGLRASVVSYGNVSLDLTSRSFSSAGMPIEI 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P RE  +LE L    GK VAK  I  ++ GL D+ +  N +E ++S+LRK+L    G   
Sbjct: 151 PARELGLLELLFMRAGKVVAKDAIVQSLTGL-DDDLSPNAIEQYVSRLRKRL-APFGL-T 207

Query: 210 VDSKRFLGYSID 221
           V + R +GY +D
Sbjct: 208 VRTARGIGYYLD 219


>gi|89094628|ref|ZP_01167565.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89081098|gb|EAR60333.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 23/211 (10%)

Query: 23  GVSLEGFNSLEF---EEWLQS--SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
            + L+GF S  F   +E L +  ++R D++ I+  L        EL + IR  S +P+I 
Sbjct: 24  ALQLDGFTSEHFILAQEGLNALQNSRFDLAIIDVGL--PDFNGFELCKRIREFSNIPIIF 81

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFS 135
           ++        +   + G DD V KP   RE+  RV AI RR+    S  R++T    +  
Sbjct: 82  LTARSDEIDRILGLELGADDYVTKPFSPRELSTRVKAILRRVAPSASTERSDT----LIL 137

Query: 136 DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
           D +   +  + +  PL R E  +L  ++ N  +  ++ Q+  A +   + +++   V++H
Sbjct: 138 DQKRACIFYREQKLPLTRIEYLLLSKMLNNPEQVFSREQLMQAAWDHPEHSLDR-AVDTH 196

Query: 194 ISKLRKKLRNKLGFDP----VDSKRFLGYSI 220
           I  +R KL     F+P    + + R LGYS+
Sbjct: 197 IKTIRAKLNE---FNPDQQLIKTHRGLGYSL 224


>gi|88858358|ref|ZP_01133000.1| hypothetical protein PTD2_13249 [Pseudoalteromonas tunicata D2]
 gi|88819975|gb|EAR29788.1| hypothetical protein PTD2_13249 [Pseudoalteromonas tunicata D2]
          Length = 229

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/230 (20%), Positives = 105/230 (45%), Gaps = 22/230 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60
             +++D   +++ Y  +    G  ++G+   +  E        D++ ++   IG G+++ 
Sbjct: 4   IAIVEDETAIRENYTEMLTKQGYQVQGYADRQSAELAFKQQLPDLAIVD---IGLGDEID 60

Query: 61  --LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               L + +R+ S+ +P+I ++   S   T+     G DD + K I    + AR+AA++R
Sbjct: 61  GGFTLCQTLRSLSKTLPIIFLTARDSEIDTVCGLRMGADDYLTKDISLPHLAARIAALFR 120

Query: 118 RLK------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R+       V+ N    GP+++ ++            L   E  ++  L    G   ++ 
Sbjct: 121 RMAALEVPVVAQNILTRGPLKIDTNRMQVSWHDHAIDLTITEFWMVHALAQRPGHVKSRN 180

Query: 172 QIFS--AIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGY 218
            + +   IY      V+++ + SH+ ++RKK ++    F+ VD+   +GY
Sbjct: 181 DLMTDAKIY------VDDSTITSHVKRIRKKFIKVDADFNCVDTVYGMGY 224


>gi|121604441|ref|YP_981770.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593410|gb|ABM36849.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 222

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L  + R+  + P++ ++   ++   +   D+G DD V KP+   E+ AR+ A+ RR    
Sbjct: 63  LAAVRRSGVKTPVLVLTARDAVPERIRGLDAGADDYVVKPVDLHELAARLRALVRRAHGQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + +    R     GE   L  RE  +L+  M +  + +++ Q+   +Y  +
Sbjct: 123 PQERLSAQDVELDPASRTVRKAGEPVTLSTREFDLLQAFMLSADRVLSREQLEQQLYS-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + VE N +E HI  LR+KL   L    + + R +GY +
Sbjct: 182 GQEVESNAIEVHIHNLRRKLGPAL----IHTVRGVGYML 216


>gi|295098193|emb|CBK87283.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 4/152 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             I RR K            P+ V         + ++  L   E R+L+ L    GK  +
Sbjct: 122 KTILRRCKPQRELQVLDAQSPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 182 REQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|311744313|ref|ZP_07718117.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312486|gb|EFQ82399.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 334

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 6/129 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPR 151
           G DD V KP   RE++ARVAA+ RR       A    G +RV    R   V+     L  
Sbjct: 203 GADDYVTKPFSPRELVARVAAVLRRSTGVTGGAVLVVGAVRVDPGSRQVWVEEREVVLTA 262

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
            E  +L  LM   G+ + + Q+ + ++G  D +     V+ H++++R KL +     P+ 
Sbjct: 263 TEFDLLLALMRRPGQVLRREQLLADVWGEADYS-GSRTVDVHVAQVRAKLGDA---SPIR 318

Query: 212 SKRFLGYSI 220
           + R +GYS+
Sbjct: 319 THRGVGYSV 327


>gi|261367174|ref|ZP_05980057.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
 gi|282570768|gb|EFB76303.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
          Length = 222

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 1/129 (0%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P+I ++   SL+  +     G DD + KP    E++ARV ++ RR   +N       + 
Sbjct: 72  TPVIFVTAKTSLKDRVRGLHEGADDYLTKPFEPLELVARVESVLRRTSRANVILHAFGVD 131

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +   GR     G    L  RE  +LE LM NRG  + +  ++  ++G  D+  +   ++ 
Sbjct: 132 LDPAGRTVLQNGRPVHLSPREFELLELLMRNRGMTLYREVLYERLWG-DDDTFDTRPLDL 190

Query: 193 HISKLRKKL 201
            I++LRKKL
Sbjct: 191 CITRLRKKL 199


>gi|163856778|ref|YP_001631076.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163260506|emb|CAP42808.1| two-component response regulator [Bordetella petrii]
          Length = 238

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 24/215 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L  +GY      +G +  G   LE   W          A+   L+  G   LE+ +  RA
Sbjct: 22  LRDEGYEVTHAAEGET--GLRQLEAGRW---------DALVLDLMLPGIDGLEICKRARA 70

Query: 70  HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KV 121
            ++  P+I  S   S    +   + G DD + KP    E++AR+ A+ RR        ++
Sbjct: 71  MARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARIKALLRRTDALERNARL 130

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R E   + +    RD  V G+   L  RE  +L +   + GK  ++  + + ++G  
Sbjct: 131 DAGRLEVSGLSIDPVTRDATVDGQPLDLTPREFDLLYFFARHPGKVFSRMDLLNQVWGYQ 190

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            E   E+ V +HI++LR K+      DP +  R L
Sbjct: 191 HEGY-EHTVNTHINRLRTKIEA----DPSEPSRIL 220


>gi|221134917|ref|ZP_03561220.1| putative DNA-binding response regulator PhoB [Glaciecola sp.
           HTCC2999]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 83/171 (48%), Gaps = 14/171 (8%)

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++L R  + H    ++P+I ++        +   D+G DD + KP   +E++AR+ 
Sbjct: 58  GGSGVQLARKFKEHEFTREIPVILLTARGEEDDKIRGLDAGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR+  +   A+  PI       DP        G    +   E ++L + M++  +  
Sbjct: 118 AVMRRVTPT---AKEEPIHFSGLVLDPISHRVTANGVSIEMGPTEFKLLHFFMSHAERVY 174

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           ++ Q+   ++G  +  VE+  V+ HI +LRK L ++ G+D  + + R  GY
Sbjct: 175 SREQLLDNVWGT-NVYVEDRTVDVHIRRLRKALESQ-GYDAMIQTVRGAGY 223


>gi|53718414|ref|YP_107400.1| response regulator transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|126452265|ref|YP_001065094.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|254261284|ref|ZP_04952338.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|52208828|emb|CAH34767.1| response regulator transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|126225907|gb|ABN89447.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|254219973|gb|EET09357.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 247

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q
Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 219


>gi|329927719|ref|ZP_08281831.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328938297|gb|EGG34690.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 231

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 17/154 (11%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE++L   R +    ++P+I IS     Q+ +     G DD + KP    E+ AR+    
Sbjct: 64  GEEIL---RKLGPDRRLPVIIISAKNEQQSKVAVLRMGADDYITKPFDVEEVAARLDIHL 120

Query: 117 RRLKVSNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           RR + +   AE   IR          SD +   V G    L  RE  +LE LM+   K  
Sbjct: 121 RRYRRA---AEPDLIRQLTYKDIHLDSDTKAVTVNGSGVVLTAREFTVLELLMSYPKKVF 177

Query: 169 AKTQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201
            K  +F A++G  D  + ++N +  H+S LRKKL
Sbjct: 178 TKQNLFEAVWG--DAYLGDDNTITVHMSNLRKKL 209


>gi|288870466|ref|ZP_06114194.2| DNA-binding response regulator [Clostridium hathewayi DSM 13479]
 gi|288867102|gb|EFC99400.1| DNA-binding response regulator [Clostridium hathewayi DSM 13479]
          Length = 243

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 13/155 (8%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           +  ++LE+ + +R    VP++  S   S+       D G D  +  P    E L+   A+
Sbjct: 66  RNNRLLEMLKYLREVKSVPILVYSLINSITNKTICLDLGADAWIAAPFRLEECLSVANAL 125

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRV 168
            RR    N   +   + +F +G   +++       G    L  +E ++L YL +N+G+ +
Sbjct: 126 IRRYTELNIGGQNHHV-IFRNGLTMDLEKMAVWKNGRSIQLTVKEFQLLYYLASNQGQVI 184

Query: 169 AKTQIFSAIYGLFDE--AVEENVVESHISKLRKKL 201
            K QI+   Y L+ E   V  N VE+ I +LRKKL
Sbjct: 185 NKEQIY---YHLWKEDIGVGSNSVETLIMRLRKKL 216


>gi|239628175|ref|ZP_04671206.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518321|gb|EEQ58187.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  S+VP+I IS        +   + G DD + KP     + A++ A+ RR       S
Sbjct: 73  IRQVSRVPVIFISSAADNLNIVMAMNMGGDDFIAKPFDLDVLTAKIQAMLRRTYDFAGQS 132

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G +    DG     +  +  L R E RIL+ L+ N+G+ V++  +   ++   D
Sbjct: 133 RLLEHRGAVLNLDDGTLNAGKSRI-DLTRNEHRILQVLLENKGRIVSRDTLMLRLWE-SD 190

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V++N +  ++++LRKKL      D + +K+  GY I
Sbjct: 191 SYVDDNTLTVNVTRLRKKLEENGLPDFITTKKGSGYLI 228


>gi|224539062|ref|ZP_03679601.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519307|gb|EEF88412.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 243

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 20/170 (11%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL + IR  +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R 
Sbjct: 76  FELCKEIRKTNPGIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKR- 134

Query: 120 KVSNNRAETGP----IRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
              NN A T P    IR +SD      G++    G    L  +E  +L Y+  N  + ++
Sbjct: 135 ---NNEA-TAPQPREIR-YSDLYIDLQGKNVTRNGTPIKLSPKEYNLLLYMTENAERVLS 189

Query: 170 KTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + +I   ++   FD     N ++ +I+ LRKK+        + +K  +G+
Sbjct: 190 RIEIAEKVWNTHFDTGT--NFIDVYINYLRKKIDKDFDTKLIHTKAGMGF 237


>gi|219854871|ref|YP_002471993.1| hypothetical protein CKR_1528 [Clostridium kluyveri NBRC 12016]
 gi|219568595|dbj|BAH06579.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 236

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQVP+I ++        +   D G DD + KP   +E ++R+ AI RR + 
Sbjct: 67  DVCKYVRKKSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFVSRIKAILRRTES 126

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +N + +      I + ++  +   +G    L  +E ++L   M N  + +++ +I   + 
Sbjct: 127 NNYKPKIFRCKDIVLNAETLEAYKKGHDLALSMQEYKLLLLFMNNAQRVMSREEILDNLT 186

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
               E  + N +  +I ++R+K+ ++    + + +KR  GY  D
Sbjct: 187 DGSGEYFDTNTLSVYIKRIREKIEQDSSNPEYIKTKRGFGYQWD 230


>gi|186475207|ref|YP_001856677.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191666|gb|ACC69631.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 253

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRG 119

Query: 120 KVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G +     GR      +V  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 120 AGGGPTVVKHGSLSFDQVGRIAYANDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E ++ +LRKK+    G   + + R LGY ++
Sbjct: 180 E-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 219


>gi|194476778|ref|YP_002048957.1| two-component response regulator [Paulinella chromatophora]
 gi|171191785|gb|ACB42747.1| two-component response regulator [Paulinella chromatophora]
          Length = 248

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 23/195 (11%)

Query: 41  SAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLD 89
           +A +   A+EAF   + + V+    +PR+        +R  S VP++ ++    +   + 
Sbjct: 37  TASDGAEALEAFHRCEPDLVVLDVMMPRLDGYGVCQELRKESDVPIVMLTALGDVADRIT 96

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-------ETGPIRVFSDGRDPEV 142
             + G DD + KP   +E+ AR+  + RR++             + G +R+ ++ R    
Sbjct: 97  GLELGADDYLIKPFSPKELEARIRCVLRRVEKDQTAGIPNSGVIQVGDLRIDTNKRQVFR 156

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE-AVEENVVESHISKLRKKL 201
             E   L   E  +LE L++  G+  ++ +I   ++G   E  V+  VV+ HIS+LR KL
Sbjct: 157 NDERIRLTGMEFSLLELLVSRSGEPFSRGEILKEVWGYTPERHVDTRVVDVHISRLRSKL 216

Query: 202 RNKLGFDPVDSKRFL 216
            +    DP + +  L
Sbjct: 217 ED----DPANPELIL 227


>gi|171317083|ref|ZP_02906287.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171097784|gb|EDT42608.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 225

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 9/155 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   +    +G DD + KP    E+ ARV  + RR + ++ +  T   
Sbjct: 73  RTPVLMVSALSDVDNRVGGLRAGGDDYLTKPFDPEELTARVEVLLRRRQPASVQVATTLQ 132

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            GP+ +    R     G    L   E R+LE++M +  + + ++ +F A++G  FD    
Sbjct: 133 VGPLELDLITRCVRRDGREIGLLPTECRVLEFMMRHAHQTITRSMMFEAVWGYRFDPGT- 191

Query: 187 ENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            NV++ H+ +LR K+ +  G  P + + R  GY +
Sbjct: 192 -NVIDVHMRRLRAKI-DPTGVTPMIQTVRGSGYRL 224


>gi|157363865|ref|YP_001470632.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157314469|gb|ABV33568.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 204

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 19/167 (11%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I    ++V ++ ++    ++  +     G DD + KP H  E+LARV A+ RR++  
Sbjct: 48  LEKIRSTDAEVGIVILTARGEVENKIRGLKKGADDYLPKPFHLDELLARVEAVARRVR-K 106

Query: 123 NNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  + GP        I  F DGR+         L  RE  +L +L  N  K V++ ++ 
Sbjct: 107 TDLLKIGPLTFDMKSKILSFPDGRET-------ILSDRESALLYHLYVNMRKVVSRDELL 159

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G  +  +  N+V+ +I  LR K      F  + + R  GY +D
Sbjct: 160 KEVWG-NNSYISRNIVDVYIKYLRDKFGEYADF--IKTVRGTGYVLD 203


>gi|53723015|ref|YP_112000.1| metal-related two-component system, response regulator
           [Burkholderia pseudomallei K96243]
 gi|76819077|ref|YP_336261.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|126444564|ref|YP_001063861.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126458151|ref|YP_001076746.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134278523|ref|ZP_01765237.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 305]
 gi|167724960|ref|ZP_02408196.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei DM98]
 gi|167743904|ref|ZP_02416678.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 14]
 gi|167821087|ref|ZP_02452767.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 91]
 gi|167829447|ref|ZP_02460918.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 9]
 gi|167850926|ref|ZP_02476434.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei B7210]
 gi|167899528|ref|ZP_02486929.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 7894]
 gi|167907844|ref|ZP_02495049.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei NCTC 13177]
 gi|167916204|ref|ZP_02503295.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 112]
 gi|167924039|ref|ZP_02511130.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei BCC215]
 gi|217422676|ref|ZP_03454179.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 576]
 gi|226197040|ref|ZP_03792618.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|237510348|ref|ZP_04523063.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|242313953|ref|ZP_04812970.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106b]
 gi|254184632|ref|ZP_04891221.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1655]
 gi|254185852|ref|ZP_04892370.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254193683|ref|ZP_04900115.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei S13]
 gi|254265562|ref|ZP_04956427.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1710a]
 gi|254300907|ref|ZP_04968351.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 406e]
 gi|52213429|emb|CAH39472.1| metal-related two-component system, response regulator
           [Burkholderia pseudomallei K96243]
 gi|76583550|gb|ABA53024.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|126224055|gb|ABN87560.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126231919|gb|ABN95332.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134250307|gb|EBA50387.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 305]
 gi|157811175|gb|EDO88345.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 406e]
 gi|157933538|gb|EDO89208.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169650434|gb|EDS83127.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei S13]
 gi|184215224|gb|EDU12205.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1655]
 gi|217394907|gb|EEC34926.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 576]
 gi|225931023|gb|EEH27032.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|235002553|gb|EEP51977.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|242137192|gb|EES23595.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106b]
 gi|254216564|gb|EET05949.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1710a]
          Length = 230

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 27/222 (12%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           R L + G++  +  DG+S  G + L+ E +       D++ ++  L G  G  V+   R 
Sbjct: 18  RGLTEAGFVCDWTQDGIS--GLHQLQTENY-------DLAILDVMLPGCDGWTVV---RE 65

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R   + P++ ++    +   +   + G DD + KP    E+LARV ++ RR      +A
Sbjct: 66  LRRTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR-----GQA 120

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              P+   ++       R    QG    L  +E  +L  LM  +G+ + ++ I S I+ +
Sbjct: 121 TDAPVLRVANLELDLIQRKARRQGNTILLTAKEFLLLWLLMRRQGEILPRSLIASQIWDI 180

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   + NVV++ I ++R K+        + + R +GY ++
Sbjct: 181 NFDS--DSNVVDAAIKRVRAKVDQDYEPKLIHTVRGMGYVLE 220


>gi|330987464|gb|EGH85567.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010636|gb|EGH90692.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 249

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 71  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 130

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 131 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 188

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 189 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 227


>gi|300813490|ref|ZP_07093834.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512439|gb|EFK39595.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 227

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 10/144 (6%)

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +RA +  +P+I I+     +T    FD G DD + KP    ++L RV A  RR +  N+ 
Sbjct: 66  MRAKNFNMPVIIITAKIDEKTKFYTFDIGADDFITKPFEKADLLNRVKANIRRYRHLNSN 125

Query: 126 AETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                I      +++ D     ++GE   +   E  IL+ L+ N  K  +K  ++ +++ 
Sbjct: 126 MSKNSILEFKNLKLYEDENRILIKGEELKVTPIEFEILKTLLKNPNKIFSKENLYRSVWN 185

Query: 180 LFDEA-VEENVVESHISKLRKKLR 202
             DE   E++ +  HIS LR K++
Sbjct: 186 --DEYFFEDDTINVHISNLRSKIK 207


>gi|300855686|ref|YP_003780670.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435801|gb|ADK15568.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           +R  S VP+I ++     +  L  F  G D  V KP+  + ++A++ A+ +R     +  
Sbjct: 68  LRKISNVPIIMLTARAEDEEQLLGFQLGTDSYVTKPVSPKVLVAKIKALLKRTYSEEENQ 127

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N +     + +  +G + +V  E   L  +E  +L YL+ N+   +++ +I  AI+G+ D
Sbjct: 128 NKQNSYDGLYINREGHEVKVDDENVYLSPKEFELLCYLIKNKDIVLSREKILDAIWGI-D 186

Query: 183 EAVEENVVESHISKLRKKL 201
              +   V++H+ +LR+KL
Sbjct: 187 YYGDLRTVDTHVKRLREKL 205


>gi|291446455|ref|ZP_06585845.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349402|gb|EFE76306.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 240

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 12/179 (6%)

Query: 34  FEEWLQSSAREDVSAIEAF---------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           FE  +  +    V+ +E F         ++  G  +    R+  +    P++ ++   + 
Sbjct: 30  FETAVAGTGGAAVAQVETFRPHLIVMDVMLPDGSGIDATRRLRGSGCLAPVVFLTARDAT 89

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPEV 142
           +  +     G DD V KP    E++AR+ A+ RR      RA+     + +  D  +   
Sbjct: 90  EDKIAGLTVGGDDYVTKPFSLEELIARIRAVLRRTAHPAERAKVTFADLEIDDDAHEVRR 149

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            G    L   E ++L YL+A+ G+ ++K QI   ++  +D    + VV+++IS LR+K+
Sbjct: 150 HGVPVDLTPTEFKLLRYLVAHAGRVLSKRQILDHVWE-YDFGGSDAVVQTYISYLRRKI 207


>gi|283788536|ref|YP_003368401.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282951990|emb|CBG91717.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 226

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 104/221 (47%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            +LI+D    +D     +   G+S  G+    + + +E L+ + +E  + I   ++  G 
Sbjct: 3   ILLIEDNQKTRD-----WVSQGLSEAGYVVDQASDGKEGLRFALQESYALIILDIMLPGL 57

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              ++ + +R  +Q P+I ++   +++  +   +S  +D + KP    E+LARV A  R 
Sbjct: 58  DGWQVLKALRTANQTPVICLTARDAVEDRVKGLESSANDYLVKPFSFAELLARVRAQLRN 117

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   +   + + S  +     G+   L R+E  +L  L +  G+ + +T I S ++
Sbjct: 118 HSPHHTYLKISGLEMDSVRQSVSRDGKAIVLTRKEFLLLWLLASRAGEIIPRTVIASEVW 177

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G+ FD   E N V+  I +LR K+ +      + + R +GY
Sbjct: 178 GINFDS--ETNTVDVAIRRLRSKVDDPFDVKLIGTVRGMGY 216


>gi|326315247|ref|YP_004232919.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372083|gb|ADX44352.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 236

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 17/167 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R +R  S VP+I +S        +   D+G DD + KP    E+LARV A  RR +
Sbjct: 65  LTLLRDVRNWSAVPIIVLSARTDESDKIAALDAGADDYLTKPFGTGELLARVRANLRRPR 124

Query: 121 VSNN---RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +     +AE        G I V    R     G V  L   E R+L  L+AN G+ + +
Sbjct: 125 PATGQGLQAEAAEPVFRFGDIEVDRGARLVRRAGTVVHLTPTEYRMLTVLVANAGRVITQ 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
            Q+   ++G           +SH  ++    LR KL  DP   +  L
Sbjct: 185 RQLLREVWG------PARSDQSHYLRIYMGHLRQKLEADPAQPRHLL 225


>gi|262166699|ref|ZP_06034436.1| transcriptional regulator CpxR [Vibrio mimicus VM223]
 gi|262170378|ref|ZP_06038056.1| transcriptional regulator CpxR [Vibrio mimicus MB-451]
 gi|261891454|gb|EEY37440.1| transcriptional regulator CpxR [Vibrio mimicus MB-451]
 gi|262026415|gb|EEY45083.1| transcriptional regulator CpxR [Vibrio mimicus VM223]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NNRAETGPIRVFSDGRDPEVQGE 145
            + G DD + KP   RE+LAR+ AI RR + +      +  E   I+V+   ++   QG+
Sbjct: 90  LELGADDYLPKPFSDRELLARIRAILRRTQNALAPKHTDVIECQDIQVYPGKQEAYCQGQ 149

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
           +  L   E  +L + + + G+ + K  +   + G     FD A     ++ H+S LRKKL
Sbjct: 150 LLDLTTTEFALLTHFVQSPGETLTKEMLSIEVLGKRLAAFDRA-----IDMHVSNLRKKL 204

Query: 202 RNKL-GFDPVDSKRFLGY 218
             +L G   + + R  GY
Sbjct: 205 PERLDGKARIKTLRGRGY 222


>gi|258625652|ref|ZP_05720531.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM603]
 gi|258581890|gb|EEW06760.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM603]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NNRAETGPIRVFSDGRDPEVQGE 145
            + G DD + KP   RE+LAR+ AI RR + +      +  E   I+V+   ++   QG+
Sbjct: 90  LELGADDYLPKPFSDRELLARIRAILRRTQNALSPKHTDVIECQDIQVYPGKQEAYCQGQ 149

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
           +  L   E  +L + + + G+ + K  +   + G     FD A     ++ H+S LRKKL
Sbjct: 150 LLDLTTTEFALLTHFVQSPGETLTKEMLSIEVLGKRLAAFDRA-----IDMHVSNLRKKL 204

Query: 202 RNKL-GFDPVDSKRFLGY 218
             +L G   + + R  GY
Sbjct: 205 PERLDGKARIKTLRGRGY 222


>gi|153855253|ref|ZP_01996419.1| hypothetical protein DORLON_02433 [Dorea longicatena DSM 13814]
 gi|149752252|gb|EDM62183.1| hypothetical protein DORLON_02433 [Dorea longicatena DSM 13814]
          Length = 228

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 13/174 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   ++   ++ HS +P+I ++        L     G DD + KP +   +LAR+  + 
Sbjct: 58  GESGFDICTKLKEHSDIPIIFLTSRTDSMDELTGILKGADDYITKPFNPPILLARIGVVL 117

Query: 117 RRLKVSNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +R    N     G         + + + G   E +G+   L + E +IL  L   +G+ V
Sbjct: 118 KRTTNKNAEKSRGNALNMEYKGVILNAVGGCIEHEGKKTDLTKNELKILHLLYQKKGEIV 177

Query: 169 AKTQIFSAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      I  L+D  V  ++N +  ++++LR KL +    D +++KR +GY I
Sbjct: 178 PR---LDMIEYLWDNEVFIDDNTLSVNVTRLRGKLADIGVTDFIETKRGMGYRI 228


>gi|119492095|ref|ZP_01623548.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119453305|gb|EAW34470.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 222

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 21/219 (9%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65
           D+ L  +G+I    +DG   E  N +  E++       ++  ++  L G +G +VLE  R
Sbjct: 18  DKKLRDNGFITTIAEDGY--EALNQVRHEQY-------NLLILDLGLPGIEGTEVLEELR 68

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
                 ++P+I ++    +   +   + G +D V KP    E+LAR+    R+      +
Sbjct: 69  --GQGEEIPIIILTARDEVGDKVSGLEGGANDYVTKPFSFEELLARIRLQLRQPSTPEPK 126

Query: 126 AE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           AE     G I +    R   V      L   E  +L+ LM +  + +++ QI + ++G +
Sbjct: 127 AERFLKVGNITLDIRSRTVMVGDRRVELSNYEFILLDTLMRHPDQVLSRDQILNYVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     N+V+ +I  LRKKL   L    +++ R +GY +
Sbjct: 186 DYDSSSNIVDVYIGYLRKKLNRNL----IETVRSVGYRL 220


>gi|76799414|ref|ZP_00781565.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21]
 gi|76585237|gb|EAO61844.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21]
          Length = 179

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 7/123 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R+IR  SQ+P+I ++   +    +   + G DD + KP +  E+LAR+ +  RR   
Sbjct: 56  ELTRLIRQDSQIPIIMLAAKTTDMDRILGLNIGADDFITKPFNSLEVLARINSQLRRYYE 115

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K  N   + G + +  +  +    G+   L   E +IL  LM++ G+   KTQ++
Sbjct: 116 FNSLAKPKNQFIKIGELELDEEHVELTKNGKHIKLTATEFKILHILMSSPGRIYTKTQLY 175

Query: 175 SAI 177
             I
Sbjct: 176 EKI 178


>gi|331268468|ref|YP_004394960.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
 gi|329125018|gb|AEB74963.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
          Length = 247

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 98/214 (45%), Gaps = 17/214 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++D       ++G S++  ++   EE ++     ++  I   L+  G    
Sbjct: 17  ILIIEDEENIRDILNYSLNNEGYSIKEAST--GEEGIKIIENSNIDLIILDLMLPGISGY 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R I  + ++P+I ++    +   +   + G DD + KP   RE++AR+    RR+K 
Sbjct: 75  DVCREINPNYKIPIIMLTAKNDIVDKVIGLELGADDYITKPFDIREVIARIKVCLRRIKE 134

Query: 121 -----VSNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                  +   E           I++F D R+     E+  L  +E  +L +L  N+   
Sbjct: 135 LDKQYYEDKNGEDSQNIMKIDENIKIFIDSREIFKDEEIINLKPKEYDLLYFLARNKNIV 194

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++ Q+   I+G +D   +   V+ H+ ++RKKL
Sbjct: 195 FSREQLLDDIWG-YDFLGDSRTVDVHVQRIRKKL 227


>gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 232

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNN----RAETGPIRVFSDGRDPEVQGEVFPL 149
           G DD V KP    E++ R+  I RR   S++    R     + +  D R+    GE   L
Sbjct: 100 GADDYVTKPFSLEEVVTRLRVILRRAGHSDDKQSARVTFADLELDDDTREVWKAGEPVSL 159

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              E  +L Y M N G  ++K +I + ++  +D   E  VVES++S LR+K+
Sbjct: 160 SPTEFTLLRYFMVNAGTVLSKPRILAHVWN-YDFGGEVGVVESYVSYLRRKI 210


>gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTDAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKL 204


>gi|296128430|ref|YP_003635680.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020245|gb|ADG73481.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 248

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 17  ALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE----------LP 64
           AL  DD  +L      +L +E W    A   + A+E   +   + VL           LP
Sbjct: 28  ALVVDDEQALAELLCTALRYEGWRAELAPSALDAVERAAVFDPDVVLADAALAEHTDLLP 87

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           R+ RA   V ++ ++  D P  Q      D   DD V KP    E++AR+  + RR    
Sbjct: 88  RLRRARPAVSVLLLAGRDAPDAQAASLTAD---DDYVTKPFGVEEVVARLRGLLRRAGAV 144

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S++    G +R+  D  +     +   L   E  +L Y M N  + ++K QI   ++
Sbjct: 145 TQTSDSTLVVGDLRLDEDSHEVWRGDDAIRLTATEFELLRYFMRNPRRALSKAQILDRVW 204

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
             +D   + N+VE ++S LR+K+
Sbjct: 205 Q-YDFGGQANIVELYVSYLRRKI 226


>gi|251790803|ref|YP_003005524.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247539424|gb|ACT08045.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 231

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 21/196 (10%)

Query: 42  AREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGISDYPSLQTTLDF 90
           AR+ VS +E  L  K   +L           E+   +R  S VP+I ++        +  
Sbjct: 33  ARDGVSGLEMALRAKPALILLDVMLPGMNGTEVLAALRRKSDVPVIMVTAMGDDTDKIGA 92

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAET-GPIRVFSDGRDPEV---QG 144
              G DD V KP H  E++ARV A+ RR    ++  R  + GP+ V  D     V   QG
Sbjct: 93  LRYGADDYVTKPYHPGEVVARVQAVLRRTCGAMTPGRPLSFGPLVVDQDAMLAAVTDAQG 152

Query: 145 EVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +  P  L   E  +L  ++  + +  ++ ++  A   L D    E VV++HI  LRKKL 
Sbjct: 153 DSRPLDLTPTEFSLLTTMLRAQTRAFSRQELLEAC--LPDSDALERVVDTHIYNLRKKLE 210

Query: 203 NKLGFDPVDSKRFLGY 218
                D + + R +GY
Sbjct: 211 AVGIGDVLLTVRAVGY 226


>gi|241895845|ref|ZP_04783141.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870888|gb|EER74639.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 234

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 105/220 (47%), Gaps = 24/220 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L K+GY     D  V+++G  +L+  E    S   D+  ++  L   +G +VL   R IR
Sbjct: 21  LTKEGY-----DVAVAMDGREALDLFE----SEEPDLVLLDQMLPEVEGTEVL---RQIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             SQ P+I ++   S    +   + G DD V KP  +RE+LAR+ A  RR    + ++  
Sbjct: 69  TKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQSPVSGQSGQ 128

Query: 127 --ETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++G I++ +    P+       G+   L  RE  +L +L  + G+ + +  +   ++G
Sbjct: 129 VDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLSKHIGQVMTRDDLLQTVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
            +D   +   V+  + ++R+K+        +  ++R +GY
Sbjct: 189 -YDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGY 227


>gi|228961520|ref|ZP_04123130.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798138|gb|EEM45141.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 224

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKL 205


>gi|260589980|ref|ZP_05855893.1| phosphate regulon transcriptional regulator PhoB [Blautia hansenii
           DSM 20583]
 gi|260539787|gb|EEX20356.1| phosphate regulon transcriptional regulator PhoB [Blautia hansenii
           DSM 20583]
          Length = 233

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 1/141 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S VP++ ++   S    +  F  G DD V KP   +E+L R+ AI RR  +
Sbjct: 63  DLCKKIREFSDVPILFLTGCSSELELIRGFQVGGDDYVTKPFRMQELLVRIQAILRRSSL 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           ++      ++G E  PL   E +I   L+ +    + +  +   ++  
Sbjct: 123 NKGEYYQSGELYYNHFTHQMIKGKEALPLTSVELKIAVLLLKSWPNTITRKDLLYHVWDN 182

Query: 181 FDEAVEENVVESHISKLRKKL 201
             + VEEN +  ++S+LR KL
Sbjct: 183 DFQFVEENTLNVNVSRLRDKL 203


>gi|170693423|ref|ZP_02884582.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170141578|gb|EDT09747.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 290

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 83  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 141

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR   +  +V  L  RE  +LE L+   G+ V+K Q
Sbjct: 142 -----GAGGGPTIVRHGSLGFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQ 196

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+    G   + + R LGY ++
Sbjct: 197 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 242


>gi|150388841|ref|YP_001318890.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948703|gb|ABR47231.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 231

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 10/169 (5%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDD 97
           S  +D+ AI   L       LEL + +R+HS    +P++ ++        +   + G DD
Sbjct: 44  SNHKDIDAIILDLFLPDCNGLELLKTVRSHSIHSDIPVVILTSNDDKLDLVIALEMGADD 103

Query: 98  VVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
            + KP H RE++AR+    RR    ++  N       I +    R+ +    +  L   E
Sbjct: 104 YITKPFHKRELIARINVCLRRAQNTIRSHNTSRSISGITLDITTREVKKDDGLISLTFAE 163

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN-VVESHISKLRKKL 201
             +L   + + GK  ++  + + ++G  +  V E  V++ HIS LRKKL
Sbjct: 164 FELLLLFVTHPGKVFSRDDLLTKLWG--ESFVSETRVIDMHISSLRKKL 210


>gi|332289161|ref|YP_004420013.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
 gi|330432057|gb|AEC17116.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
          Length = 229

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 75/149 (50%), Gaps = 2/149 (1%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129
           +++P+I ++   + +  +   ++G DD + KP   + +LAR+ A++RR     +      
Sbjct: 74  AKIPIIMLTARSAEEDCITCLNAGADDYITKPFSPKILLARIEALWRRSYDPPSQIVSFE 133

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +++    +   V+ +   L   E ++L +LM +  K  ++ Q+ + I+G  D  VE+  
Sbjct: 134 NLQIDQQAQRVSVENQFVELSATEYKLLLFLMTHPEKVYSREQLLNHIWG-DDIYVEDRT 192

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+S+I +LR+ L        V + R  GY
Sbjct: 193 VDSYIRRLRRSLEPFQADRYVQTVRGFGY 221


>gi|326799051|ref|YP_004316870.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326549815|gb|ADZ78200.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 24/160 (15%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSN--- 123
           PLI +S   + +  +    +G DD + KP H  E+LAR+ A  RR       L V     
Sbjct: 75  PLIILSALDNPEEKVKGLQAGADDYLGKPFHFEELLARINAQLRRKSFEKGILDVQKYAD 134

Query: 124 ---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N AE G  R           G+   L  RE ++L +L+ NR + V++TQI  A++ +
Sbjct: 135 LEVNIAEQGAKRA----------GKNILLSPREYKLLLFLLNNRERVVSRTQIAEAVWDI 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  NVV+ +I+ LR K+        + + +  GY +
Sbjct: 185 HFNT-HTNVVDVYINYLRNKIDKGFAAPLIHTVKGRGYML 223


>gi|319946321|ref|ZP_08020559.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319747474|gb|EFV99729.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 241

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 18/209 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61
           +LI+D   +++   +L  +D   L+ F+  E     Q  +  D+  ++  L GK G++VL
Sbjct: 17  LLIEDNNDIQEILYSLLSEDHEVLQAFSGTEGLRLFQQESI-DLVLLDIMLPGKNGDQVL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  SQVP+I ++          +  +G +D + KP +  E+ ARV    R    
Sbjct: 76  E---EIRLQSQVPVIMMTALGDKHLISQYLLAGANDYIVKPFNLDEVAARVTVQLRNHVS 132

Query: 122 SNNRAETGPIRVFSD-GRDPEV----QGE-VFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               A+      F +   +PE      GE    L ++E +I E L+A+  K   K +++ 
Sbjct: 133 PAQEAQASQKLSFKNLVLNPETFELESGEQTLRLGKKEFQIFETLLAHPKKIFTKEELYE 192

Query: 176 AIYGLFDEAVE---ENVVESHISKLRKKL 201
           A++    E V    +N + + +S LRKK+
Sbjct: 193 AVW----EEVYLPGDNTLNAQLSNLRKKI 217


>gi|309784349|ref|ZP_07678988.1| transcriptional regulatory protein basR/pmrA [Shigella dysenteriae
           1617]
 gi|308927856|gb|EFP73324.1| transcriptional regulatory protein basR/pmrA [Shigella dysenteriae
           1617]
          Length = 188

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR    
Sbjct: 29  LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR---H 85

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY
Sbjct: 86  NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 145

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 146 N-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 185


>gi|295838770|ref|ZP_06825703.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
 gi|295827181|gb|EFG65293.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
          Length = 345

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   LE+ R +R  + VP++ ++     +  +   + G DD V KP   RE++ RV
Sbjct: 65  LMLPGMDGLEVCRRLRERAAVPVVMLTARGDEEDRVLGLEQGADDYVTKPFSPRELVLRV 124

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKR 167
           A++ RR   +   A + P+R+     DP  +     GE   L  RE  +L + + + G+ 
Sbjct: 125 ASVLRR---TGPDAVSAPVRLGRLAVDPAARLATRDGEALSLTLREFDLLAFFLRHPGRA 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             + ++   ++G   E  + + V  HI +LR K+ +
Sbjct: 182 FGREELMREVWGW--EFGDLSTVTVHIRRLRGKIED 215


>gi|258620439|ref|ZP_05715477.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM573]
 gi|258587318|gb|EEW12029.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM573]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 15/138 (10%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NNRAETGPIRVFSDGRDPEVQGE 145
            + G DD + KP   RE+LAR+ AI RR + +      +  E   I+V+   ++   QG+
Sbjct: 90  LELGADDYLPKPFSDRELLARIRAILRRTQNALAPKHTDVIECQDIQVYPGKQEAYCQGQ 149

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
           +  L   E  +L + + + G+ + K  +   + G     FD A     ++ H+S LRKKL
Sbjct: 150 LLDLTTTEFALLTHFVQSPGETLTKEMLSIEVLGKRLAAFDRA-----IDMHVSNLRKKL 204

Query: 202 RNKL-GFDPVDSKRFLGY 218
             +L G   + + R  GY
Sbjct: 205 PERLDGKARIKTLRGRGY 222


>gi|237797233|ref|ZP_04585694.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020083|gb|EGI00140.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 222

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 24/227 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   + D  +A  G  G +++         +  +S   D+  ++  L G  G +V
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMSGLEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L+  R        P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 63  LQQWR--GKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+ +    + G   V  DG D ++    F       R+L Y M + G+ ++K+
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEF-------RLLRYFMLHPGQILSKS 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   +Y   +E  + NV+E H++ LR+    KLG   ++++R  GY
Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVIETRRGQGY 215


>gi|228968381|ref|ZP_04129376.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791347|gb|EEM38954.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 226

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 63  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 123 KTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 183 KVWG-FEYIGNTRAVDIMVQRLRKKL 207


>gi|226199479|ref|ZP_03795037.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|225928555|gb|EEH24584.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
          Length = 218

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 31  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 89

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q
Sbjct: 90  -----GAGGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQ 144

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 145 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 190


>gi|255281522|ref|ZP_05346077.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
 gi|255268010|gb|EET61215.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 4/150 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I++   +P+I ++      + +   D G DD ++KP   RE+++R+  + RR   S    
Sbjct: 69  IKSRGDIPVIFLTALGDEFSVVTGLDMGADDYISKPFRPRELVSRMRTVLRRSGRSQRVM 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + G + V       E +G    L   E R+L   + +RG  + ++ +   I+    E V 
Sbjct: 129 KIGNLSVDMVKGTVEKEGREIYLSAMEYRLLLIFLNHRGMVLTRSVLLEEIWDAAGEFVN 188

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +N +  +I +LR+K+ +    DP + +  L
Sbjct: 189 DNTLTVYIKRLREKIED----DPANPQILL 214


>gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 226

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 15/158 (9%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
            Q P++ I+   +++  +   D G DD + KP   +E+ ARV A+ RR       +   P
Sbjct: 71  CQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALLRR-----GTSSLPP 125

Query: 131 IRVFSD-GRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           +  + D   DP       Q ++ PL  +E  +LE+ + +  +   + Q+   ++  F+  
Sbjct: 126 VLKWGDLCLDPSSCKVYYQEQLIPLSPKEYTLLEFFLRHEHRVFNRAQLLEHLWP-FERL 184

Query: 185 VEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
            EE  V++HI  LR+KL + +G   D +++   LGY +
Sbjct: 185 PEEATVKAHIRSLRQKL-DAVGAPSDVIETVYGLGYRL 221


>gi|168183441|ref|ZP_02618105.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182673489|gb|EDT85450.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 230

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 6/140 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K      
Sbjct: 70  IRKSKPMPVIIISAKEEKDIKIEALRMGADDYITKPFDIDEVSARIDSHLRRYKEFSNIT 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  +   I +  D R+  +  +   L  RE  IL+ LM    K   K+ +F +++   
Sbjct: 130 PQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFESVWS-S 188

Query: 182 DEAVEENVVESHISKLRKKL 201
           +   ++N +  HIS LR KL
Sbjct: 189 EYLCDDNTINVHISNLRNKL 208


>gi|166030488|ref|ZP_02233317.1| hypothetical protein DORFOR_00149 [Dorea formicigenerans ATCC
           27755]
 gi|166029740|gb|EDR48497.1| hypothetical protein DORFOR_00149 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 3/165 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R +R +    +I ++        +  +++G DD + KP     +L ++ A +RR  
Sbjct: 61  LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K    +  +G I   +      ++     L + E ++L + + N  + ++K QI   ++
Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKRQILENVF 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            L  + V+EN +  +I +LR+K+ +     PV  K   G    WN
Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224


>gi|160915463|ref|ZP_02077674.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
 gi|158432583|gb|EDP10872.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
          Length = 235

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 14/147 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122
           +R +  +P+I +S        +   + G DD V KP    E++ARV +  RR    L++ 
Sbjct: 68  LRENYDIPVIFLSAKSEDIDKITGLNVGADDYVTKPFEPMELIARVNSNLRRYQQILRLK 127

Query: 123 NNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + E         G + +  + ++  ++ +   L  +E +ILE LM   G+  +  QI+
Sbjct: 128 QGKKEEEQGVLLQVGDLMLNQETKEVSIRKKSVHLTSKEFKILELLMGQPGRIFSAEQIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++   +EAV  + +  HI KLRKK+
Sbjct: 188 ENVWE--EEAVNTDTIMVHIRKLRKKI 212


>gi|157147945|ref|YP_001455264.1| DNA-binding transcriptional regulator BasR [Citrobacter koseri ATCC
           BAA-895]
 gi|157085150|gb|ABV14828.1| hypothetical protein CKO_03752 [Citrobacter koseri ATCC BAA-895]
          Length = 222

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    +    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHCLETGHYSLVVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRR--- 118

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N+ E+    G + +    R   + G+   L  +E  +L  LM   G  V +  +++ I
Sbjct: 119 HHNQGESELTVGNLMLNLGRRQVWLAGQELILTPKEYALLSRLMLKAGSPVHREILYNDI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|160899237|ref|YP_001564819.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364821|gb|ABX36434.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 227

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+ VLE    +RA  Q +P + ++   S+   +   ++G DD + KP    E+ AR+ A+
Sbjct: 59  GDVVLER---LRARDQRLPALILTARDSVDERVRALNAGADDFLAKPFALAELEARLHAL 115

Query: 116 YRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR + S++ R   GP+ +    +   + G   PL +RE  +L  L+   G+   K QI 
Sbjct: 116 VRRARGSDHPRLACGPLVLDGVTKQFMLHGAPVPLSKREYSVLRVLIQRSGEPFTKKQII 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++   +  V     E  I +LRKKL    G   V + R LGY+++
Sbjct: 176 ERVFP-EESDVHLEAAEVFIHRLRKKLEGS-GVSVV-TLRGLGYALE 219


>gi|114328319|ref|YP_745476.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316493|gb|ABI62553.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 2/157 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R+   + Q P + +S   ++   ++   +G DD + KP    E++AR+ A+ RR +  ++
Sbjct: 70  RLREQNIQTPALVLSALGAVDDRIEGLRAGGDDYLVKPFSLEELVARIEALVRRPVSQAS 129

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            +   GP+R+    R    + +   L   E ++LEY+M    + V +  +   I+  +  
Sbjct: 130 LQLRAGPLRLDLLNRTLSCEDKTVDLLAMELKLLEYMMRRPDQVVTRAMLLEDIWR-YRF 188

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E N+V+ H+ KLR+KL    G   + + R  G+ +
Sbjct: 189 LPETNLVDVHMGKLRRKLAEAGGDGLIHTVRGAGFML 225


>gi|56416091|ref|YP_153166.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197365017|ref|YP_002144654.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|204926850|ref|ZP_03218052.1| DNA-binding response regulator BasR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|56130348|gb|AAV79854.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096494|emb|CAR62101.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|204323515|gb|EDZ08710.1| DNA-binding response regulator BasR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322615448|gb|EFY12368.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618508|gb|EFY15397.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622079|gb|EFY18929.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627151|gb|EFY23943.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631110|gb|EFY27874.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637671|gb|EFY34372.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642482|gb|EFY39083.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643642|gb|EFY40196.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648285|gb|EFY44745.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653516|gb|EFY49846.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659657|gb|EFY55900.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662133|gb|EFY58349.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666120|gb|EFY62298.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672540|gb|EFY68651.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675969|gb|EFY72040.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680454|gb|EFY76492.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684651|gb|EFY80655.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194670|gb|EFZ79861.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197156|gb|EFZ82296.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201727|gb|EFZ86791.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206241|gb|EFZ91203.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213252|gb|EFZ98054.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215623|gb|EGA00367.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222045|gb|EGA06431.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227912|gb|EGA12066.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229081|gb|EGA13210.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236308|gb|EGA20384.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237572|gb|EGA21633.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241762|gb|EGA25791.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248090|gb|EGA32027.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254579|gb|EGA38390.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258361|gb|EGA42038.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323259640|gb|EGA43274.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265913|gb|EGA49409.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270355|gb|EGA53803.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 222

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRIRQKKYTLPVLILTARDTLNDRISGLDVGADDYLVKPFALEELHARIRALLRRHNN 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L V N     G  + + DG++         L  +E  +L  LM   G  V +  +
Sbjct: 122 QGESELTVGNLTLNIGRHQAWRDGQE-------LTLTPKEYALLSRLMLKAGSPVHREIL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ IY  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 175 YNDIYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|22127156|ref|NP_670579.1| DNA-binding response regulator CreB [Yersinia pestis KIM 10]
 gi|45443327|ref|NP_994866.1| DNA-binding response regulator CreB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|150260093|ref|ZP_01916821.1| putative response regulator [Yersinia pestis CA88-4125]
 gi|218928069|ref|YP_002345944.1| DNA-binding response regulator CreB [Yersinia pestis CO92]
 gi|21960218|gb|AAM86830.1|AE013929_3 catabolic regulation response regulator [Yersinia pestis KIM 10]
 gi|45438196|gb|AAS63743.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|115346680|emb|CAL19563.1| putative response regulator [Yersinia pestis CO92]
 gi|149289501|gb|EDM39578.1| putative response regulator [Yersinia pestis CA88-4125]
          Length = 233

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 11/231 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +  L++D   + D  I     +G +L  F+  E      SS    ++ ++  L    G  
Sbjct: 5   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPALAIVDVGLPDINGFD 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +    R++ A   +P+I ++        +   + G DD + KP   RE+ ARV  I RRL
Sbjct: 65  LCR--RMLAAAPDLPVIFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTILRRL 122

Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + S+  A T     F        G       ++  L R E  +L+ L+    +  ++ Q+
Sbjct: 123 QKSHLLAVTSTSYQFGHFSLDEAGARVTYHQQILGLTRYEYLLLKTLLLAPERIFSRQQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
              ++   +E+ ++  V++HI  LR KLR     D P+ + R LGYS+ + 
Sbjct: 183 MDIVWAQAEES-QDRTVDTHIKTLRSKLRTVYAEDSPIRTHRGLGYSLGYQ 232


>gi|148264601|ref|YP_001231307.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146398101|gb|ABQ26734.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 97/215 (45%), Gaps = 14/215 (6%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  L   DG+S  G       E ++S+  + +          G ++ +L +    
Sbjct: 21  LEKEGYRPLIALDGIS--GL------EAVRSNPPDLILLDLMLPGLLGTEICKLLKKNEK 72

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRA 126
            + +P+I ++        +  F+ G DD + KP   RE+L RV A+ RR    K +  R 
Sbjct: 73  TAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVLRRTMPEKTAEKRI 132

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + + ++     V GE   L   E ++L  L    G+  ++  +   ++G ++   +
Sbjct: 133 TIGLVTIDTERHLVNVAGEEIILTTTEFKLLLNLAERLGRVQSRDILLQNVWG-YNYVGD 191

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              V++H+++LR KL      + + + R  GY ++
Sbjct: 192 SRTVDTHVTRLRTKLGE--AGEMIKTVRGFGYKME 224


>gi|331003807|ref|ZP_08327299.1| hypothetical protein HMPREF0491_02161 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411999|gb|EGG91396.1| hypothetical protein HMPREF0491_02161 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 223

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 16/163 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR +S VP+I IS + +    +     G DD + KPI       ++ AI RR        
Sbjct: 66  IRQNSNVPIIFISSHNNQVDMVSAMQFGADDYITKPIDINLTRVKIQAILRR-----TYE 120

Query: 127 ETGPIR--VFS----DGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            T P+   VF     D    ++ GE F   L + E  ILEYL   RG+   +  I +  +
Sbjct: 121 YTMPVDKPVFEGISLDISKAKLLGEGFCIDLTKTELLILEYLFNMRGRIAKREDIMNHCW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              D+ +++N +  +I++LRKKL + +G+   + +K+ +GY +
Sbjct: 181 Q-GDDFIDDNTLAVNITRLRKKL-SVVGYKEFIQTKKGMGYYL 221


>gi|331700970|ref|YP_004397929.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128313|gb|AEB72866.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 229

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 10/173 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +E+ + +R  SQ+P+I +S        +    SG DD V KP +  E++ARV ++ 
Sbjct: 57  GMNGIEVVKEVRKDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLL 116

Query: 117 RRLK--VSNNRAET---GPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-A 169
           RR +  V+N+  +    GP+ +  D  +   + G    L   E  IL YL+A+   RV +
Sbjct: 117 RRTEEHVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGIL-YLLASHPNRVFS 175

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
             +IF  ++   +  V    V  H+S LR K+      + V    + +GY I+
Sbjct: 176 ADEIFERVWRQ-ESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227


>gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08]
          Length = 227

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++    +L    G  +E   +  E  EW+ +++ + + A     +  G   
Sbjct: 7   VLVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAATSPDLLVADVVMPVMDG--- 63

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R++RA  + VP++ ++    +   +   D+G DD ++KP    E+LAR+ A+ RR 
Sbjct: 64  LGLCRMLRAAGNAVPILLLTARSDVADCVAGLDAGADDYLSKPFEPDELLARLRAMARRT 123

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  + A    + +  +       G    L   E  IL  L  N  + +++ QI  A++
Sbjct: 124 THLPASPAGYDDLELVPEAHAVRQNGRWIDLSSTEYAILCVLAENPEQALSRGQISDAVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +      N +E +IS LR+KL  +     + + R +GY +
Sbjct: 184 G-YAMTPASNSLEVYISYLRRKLEAEGEPRIIQTVRGVGYRL 224


>gi|319652280|ref|ZP_08006398.1| response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317396103|gb|EFV76823.1| response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 223

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 2/161 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           EL R++     +P+I ++    L      F SG +D + KP   RE+L RVA + RR  +
Sbjct: 61  ELTRLLTNDFGIPVILLTAKGQLGDKEQGFLSGSEDYIVKPFEVRELLFRVAVVLRRAER 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + G + +     + E+  E    P +E  +L  L A + K   +  +    +G 
Sbjct: 121 AMETVIKAGNLLMDRKSFEVEINQETILFPLKEFELLSLLSARKSKITQRAALIEQAWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D    E  + +HI+++R +L+       + + R +GY ++
Sbjct: 180 SDYEGSEQTLNTHINRIRDRLKKYGATVEIQTVRGIGYKLE 220


>gi|302187397|ref|ZP_07264070.1| DNA-binding response regulator [Pseudomonas syringae pv. syringae
           642]
          Length = 249

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 71  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 130

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 131 QTILRR--VRDERSDQRSTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 188

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 189 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 227


>gi|293397258|ref|ZP_06641530.1| KDP operon response regulator KdpE [Serratia odorifera DSM 4582]
 gi|291420176|gb|EFE93433.1| KDP operon response regulator KdpE [Serratia odorifera DSM 4582]
          Length = 229

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 20/161 (12%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S +P+I +S   + +  +   D+G DD ++KP    E+LARV    RR   S  
Sbjct: 69  RDLRQWSAIPVIVLSARNAEEDKVSALDAGADDYLSKPFGIGELLARVRVALRRHASSQ- 127

Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  P+  FS+       R     GE   L   E R+L  L+AN GK + + Q+ + ++
Sbjct: 128 --QENPLVTFSEITVDLINRRVLRSGEELHLTPIEFRLLTELLANAGKVLTQRQLLNHVW 185

Query: 179 GLFDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216
           G        N VE H   LR     LR KL  DP   +  L
Sbjct: 186 G-------PNYVE-HSHYLRIYMGHLRQKLESDPARPRHLL 218


>gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 236

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAET------GPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR +     +  N  E       G +++  +  +  +
Sbjct: 95  GADDYMTKPFSPREVVARIKAILRRTEGKAEVIEENTEEVEATILIGDLKILPESYEVYL 154

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 155 HDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 212


>gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 1329

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 3/144 (2%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L + IR+  + VP++ ++   S        D+G DD V KP    E++ARV A+ RR 
Sbjct: 60  ISLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRG 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V++    E G +R+     +   Q +   L  +E  +LE LM N  +  +   I   ++
Sbjct: 120 GVTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR 202
             +++   E+ V +HI  LR KL+
Sbjct: 180 S-YEDTPGEDAVRTHIKGLRMKLK 202



 Score = 35.8 bits (81), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL ++IR+H Q   VP++ ++ + + +     F  G DD V+KPI   E++ R+ 
Sbjct: 437 GMSGIELCKMIRSHDQGREVPILFLTVHSNAEIVNQVFSVGADDFVSKPIIISELVNRIL 496

Query: 114 AIYRRLKV 121
               R+++
Sbjct: 497 NRLERVRL 504


>gi|229545685|ref|ZP_04434410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256619196|ref|ZP_05476042.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256853258|ref|ZP_05558628.1| response regulator [Enterococcus faecalis T8]
 gi|257422480|ref|ZP_05599470.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300861021|ref|ZP_07107108.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307275837|ref|ZP_07556976.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307291860|ref|ZP_07571731.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|229309135|gb|EEN75122.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256598723|gb|EEU17899.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256711717|gb|EEU26755.1| response regulator [Enterococcus faecalis T8]
 gi|257164304|gb|EEU94264.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300850060|gb|EFK77810.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497126|gb|EFM66672.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306507529|gb|EFM76660.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|315029565|gb|EFT41497.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315032037|gb|EFT43969.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315156147|gb|EFU00164.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
          Length = 236

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 11/118 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LAR+ AI+RRLK +                G IRV     +  V+
Sbjct: 95  GADDYLTKPFSPREVLARMKAIFRRLKPTTTETLQEDTPKAPLVIGEIRVDEQNYEVFVR 154

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +   L  +E  +L Y M  + + + +  +   I+  +D A +  +V+ HIS LR K+
Sbjct: 155 NQPIELTPKEFELLVYFMKRKDRVINRETLLERIWQ-YDFAGQSRIVDVHISHLRDKI 211


>gi|229126083|ref|ZP_04255105.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229143378|ref|ZP_04271809.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228640185|gb|EEK96584.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228657405|gb|EEL13221.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 242

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 135

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N   +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 136 TNEHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 237


>gi|182419360|ref|ZP_02950612.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237666528|ref|ZP_04526513.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376691|gb|EDT74263.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237657727|gb|EEP55282.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 226

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 20/190 (10%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP-----RIIRAH----SQVPLIGI 78
           +LE E +    +   + AIE F   + E V+    LP      +IR      S++P+I +
Sbjct: 19  NLELEGYQVVISMNGIDAIEKFETERPELVILDIMLPDISGHEVIRKFQKIDSEIPVIML 78

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVSNNRAETGPI 131
           +    +   L     G DD + KP +  E++ R+ AI +R+       K +NN  +   I
Sbjct: 79  TANSQINDKLLGLQLGADDYITKPFNSIELMLRIKAITKRINKKYNGKKENNNEFKIKGI 138

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           RV  D R   + GE      +E   L  +M N  K   + ++   ++G ++       V+
Sbjct: 139 RVLKDERKVFIDGEEIIATYKEFDTLVLMMENCNKVFTREKLLKRVWG-YEFEGNTRAVD 197

Query: 192 SHISKLRKKL 201
             I +LRKKL
Sbjct: 198 ILIQRLRKKL 207


>gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 223

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ R+  + RR+K
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I V    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKL 204


>gi|76787576|ref|YP_328862.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|47087863|gb|AAT10379.1| DNA binding response regulator [Streptococcus agalactiae]
 gi|76562633|gb|ABA45217.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|229893727|gb|ACQ90232.1| DNA-binding protein [Streptococcus agalactiae]
          Length = 217

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 16/224 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGK 56
            +++DD  ++++G  A   ++G    ++ +G  +LE F E+        +  +   L+  
Sbjct: 3   ILVVDDEDMIREGVAAFLREEGYHVILAKDGQEALEKFHEF-------PIHLMVLDLMLP 55

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                E+ + I  +  +P+I +S     +T +  FD   DD V KP     ++ R+ A+ 
Sbjct: 56  KRSGFEVLKEINGNHDIPVIVLSALGDEETQMQVFDLYADDHVTKPFSLVLLVKRIQALL 115

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR  V  +      + V        V+ E   +  +E  +L+ L+ ++ + +++ QI  +
Sbjct: 116 RRYYVVEDIWHYQDVAVDFTSYQARVKNEEVAIKPKELLVLKCLIQHKNQVLSREQILES 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   F +   + VV+ +I  LRK    KL  D + + +  GY I
Sbjct: 176 ISNDFADLPLDRVVDVYIRNLRK----KLDLDCIVTVKNAGYKI 215


>gi|16800610|ref|NP_470878.1| hypothetical protein lin1542 [Listeria innocua Clip11262]
 gi|16414015|emb|CAC96773.1| lin1542 [Listeria innocua Clip11262]
 gi|313618831|gb|EFR90714.1| transcriptional regulatory protein SrrA [Listeria innocua FSL
           S4-378]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 27/177 (15%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR  
Sbjct: 60  MTICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRR-- 117

Query: 121 VSNNRA---------ETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAK 170
             NN           ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++
Sbjct: 118 -KNNHTTTENDEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSR 176

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221
            Q+   ++G +    +E  V+ HI +LR+K+         D+K FL      GY  D
Sbjct: 177 EQLLEQVWG-YQFYGDERTVDVHIKRLRQKI-------ATDTKPFLHTVWGVGYKFD 225


>gi|116493790|ref|YP_805524.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116103940|gb|ABJ69082.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR +  V+N 
Sbjct: 67  VRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQNEVTNT 126

Query: 125 RA---ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179
                E GP+ +  D  +   + G+   L   E  IL YL+A+   RV +  +IF  ++ 
Sbjct: 127 EPDVLEGGPLTIKKDSHEVTTLTGKQIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 186 Q-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|124267828|ref|YP_001021832.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124260603|gb|ABM95597.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 236

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 11/162 (6%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L+L R +RA  +   +PL+ ++        +   + G DD + KP   RE+LARV A+ R
Sbjct: 62  LDLCRELRAAPRTRALPLLMLTARGEPMDRIVGLELGADDYLPKPFEPRELLARVKALLR 121

Query: 118 RLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R   S    +    G + V + GR   + G+   L   +  +L+ L    G+ +++ QI 
Sbjct: 122 RAAPSGGDGDVLRFGRLEVDAGGRQARLDGKPCDLTSYQFDLLQVLANAPGRVLSRDQIM 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            A+ G   EA + + ++ HIS++R  + +    DP   +R L
Sbjct: 182 DALKGHALEAFDRS-IDVHISRIRAAIED----DPKTPRRIL 218


>gi|332655316|ref|ZP_08421056.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332515821|gb|EGJ45431.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 229

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 8/168 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ R IRA  +++ +I ++        +    +G DD V KP    E+ ARV A++RR 
Sbjct: 62  FEVCRRIRAMDNKIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARVDALFRRT 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + S +     P  + +  R  E  G+   L + E  I++  M N GK +++ +I 
Sbjct: 122 GGEEEETSPDEISQPPFLLNTRNRTLEKNGQRVKLTQVEYGIVKLFMENPGKALSREEIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            A++G  D   E  +V+ +I +LR K+ +     P       GY   W
Sbjct: 182 DAVWGK-DYFGELKIVDVNIRRLRIKIEDN-PTKPTYVNTVWGYGYKW 227


>gi|332526126|ref|ZP_08402264.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332109969|gb|EGJ10597.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 20/178 (11%)

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+  L+L R  RA +   ++P+I ++        +   D+G DD + KP   +E+LAR+ 
Sbjct: 57  GQSGLQLARRWRAETRTREIPIIMLTARNEEADKIAGLDAGADDYLTKPFSPKELLARMR 116

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-------EVQGEV--FPLPRRERRILEYLMANR 164
           A+ RR       A   P+ V     DP        V GE+    +   E R+L +LM + 
Sbjct: 117 AVLRR---KAPEALDSPVEVAGLRLDPATRRVTRRVDGELREVKMGPTEFRLLHFLMTHP 173

Query: 165 GKRVAKTQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  ++ Q+   ++G  +F   +EE  V+ H+ +LR+ L        +++ R  GY +
Sbjct: 174 ERVHSRAQLLDRVWGDHVF---IEERTVDVHVKRLREALAPAQCSALIETVRGAGYRM 228


>gi|330991343|ref|ZP_08315294.1| Transcriptional regulatory protein ChvI [Gluconacetobacter sp.
           SXCC-1]
 gi|329761362|gb|EGG77855.1| Transcriptional regulatory protein ChvI [Gluconacetobacter sp.
           SXCC-1]
          Length = 236

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 25/175 (14%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + +RA SQ+P+I +S        L     G DD + KP   R +L R+ A+ RR +
Sbjct: 65  MELLQRLRARSQLPVIFLSSKDEEVDQLMGLRLGADDYITKPFSQRLLLERIRALLRRNE 124

Query: 121 VSNNRAE----TGPI------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           VS + A     TG +            +    GRD ++    F L       ++ L A  
Sbjct: 125 VSRSEAAGISPTGTMVRGALSLDETRHQCLWHGRDIQLTVTEFLL-------VKALAARP 177

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           G   ++ Q+  A YG  +  V++  ++SHI ++RKK R     F+ +++   +GY
Sbjct: 178 GLVKSRDQLIDAAYG-ENIYVDDRTIDSHIKRVRKKFRQVDDAFNQIETLYGIGY 231


>gi|326943053|gb|AEA18949.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTENAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKL 204


>gi|255281369|ref|ZP_05345924.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255268326|gb|EET61531.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 238

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 91/193 (47%), Gaps = 16/193 (8%)

Query: 40  SSAREDVSAIEAFLIGKGEKV-----LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           ++ARE +     F++   + V     ++L R +R     P++ +S     +  +   ++G
Sbjct: 39  TAARELIIQPVDFIVLDKDTVPRIDYVDLLRELRPKGCTPVLILSGSRDAEEKICALNAG 98

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP-------IRVFSDGRDPEVQGE 145
            DD + KP   RE++AR+ AI+RR       A  +T P       + +          GE
Sbjct: 99  ADDFLEKPPDTRELIARILAIWRRTMTPPPSAARQTPPKCVEYPQLSISLSNYTVTCDGE 158

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              +P +E  +L +L ++  +   + Q+   I+G +D   +   ++ HI ++R+K+++  
Sbjct: 159 AVDMPPKELELLYFLASSPNQVFTREQLLDHIWG-YDYIGDARTIDVHIKRIREKIKDHE 217

Query: 206 GFDPVDSKRFLGY 218
            +  +D+   +GY
Sbjct: 218 TWS-LDTVWGVGY 229


>gi|167751398|ref|ZP_02423525.1| hypothetical protein EUBSIR_02389 [Eubacterium siraeum DSM 15702]
 gi|167655644|gb|EDR99773.1| hypothetical protein EUBSIR_02389 [Eubacterium siraeum DSM 15702]
          Length = 227

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 85/163 (52%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +R+  +  P++ ++    ++  +   D G DD + KP    E+L+RV A+ RR 
Sbjct: 60  LEVLKTLRSEGNTTPILLLTAKAEVEDRIAGLDMGADDYLPKPFVMGELLSRVRAMLRRK 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + + +    G + +     + +   +   LP+ E +++E LM N+G  ++   I   ++
Sbjct: 120 DRFTPDIMTFGNVSLNPSSCELKGPLQSIVLPKIEYKLMELLMLNKGIYLSTEDILVKVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           G ++   E   V  +IS +RK+L   +G D  + +KR +GY++
Sbjct: 180 G-YESDAESGAVWVYISYVRKRL-AAIGADIEIRAKRSVGYTL 220


>gi|104780165|ref|YP_606663.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
 gi|95109152|emb|CAK13849.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
          Length = 223

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR  +   
Sbjct: 64  RALRARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSAIHEP 123

Query: 125 -RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
            + +   + +    R     G+   L  +E  +L  L   +G+ ++KT I   ++ + FD
Sbjct: 124 LQIQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWDINFD 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + NVVE  I +LR KL        + + R +GY ++
Sbjct: 184 S--DANVVEVAIKRLRAKLDGPFDNKLLHTIRGMGYVLE 220


>gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 230

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 10/147 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR- 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173
             S +     P   F D     V  EV        L R E  +LE L+AN  + + +++I
Sbjct: 121 -TSPDEGPDSPALTFLDLTLDPVTREVTRGSRQISLTRTEFALLEMLIANPRRVLTRSRI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200
              ++G FD     N +E +I  LR+K
Sbjct: 180 LEEVWG-FDFPTSGNALEVYIGYLRRK 205


>gi|3511129|gb|AAC33719.1| regulatory protein CopR [Salmonella enterica subsp. enterica
           serovar Dublin]
          Length = 248

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 40  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 88

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P I ++   S++  +   ++G +D + KP    E+L RV A  R+      R  
Sbjct: 89  RTAHQSPFICLTARDSVEDRVKGLEAGANDYLVKPFSFGELLGRVRAQLRQHVPVFTRLT 148

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 149 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 206

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+        + + R +GY +
Sbjct: 207 TNTVDVAIRRLRAKVDEPFEKKLIMTVRGMGYRL 240


>gi|71736657|ref|YP_274226.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557210|gb|AAZ36421.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320329284|gb|EFW85281.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882682|gb|EGH16831.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 249

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 71  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 130

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 131 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 188

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 189 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 227


>gi|53711500|ref|YP_097492.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|253564441|ref|ZP_04841898.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|52214365|dbj|BAD46958.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|251948217|gb|EES88499.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|301161228|emb|CBW20766.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis 638R]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL + IRA +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELCKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRKL 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             V++   E     +  +  D  V+  G    L  +E  +L Y++ N  K V++  I   
Sbjct: 122 AVVTDVEEELNYADLSVNLLDKSVKRAGRDIKLSPKEYNLLVYMIENAEKVVSRMDIADK 181

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++   FD     N ++ +I+ LRKK+        + +K  +G+
Sbjct: 182 VWNTHFDTGT--NFIDVYINYLRKKIDRDFDTKLIHTKTGMGF 222


>gi|310768277|gb|ADP13227.1| DNA-binding transcriptional regulator CpxR [Erwinia sp. Ejp617]
          Length = 226

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 22/215 (10%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D  +AL G  GV  +G  S ++   +      D+S I+              R +R H +
Sbjct: 26  DASLALTGKAGV--DGALSGDYNAMILDIMLPDMSGIDVL------------RQVRQHGR 71

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAE 127
           +P+I ++        +   + G DD + KP + RE++AR+ A+ RR++       NN   
Sbjct: 72  LPVIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRVEEPPAATKNNEMI 131

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + +    R  E Q + F L   E  +LE L+ +  + V+K ++     G   EA +
Sbjct: 132 VWGELTLNPATRISEWQDKPFDLTASEFNLLELLLRSAERVVSKDELSEKGLGRPREAYD 191

Query: 187 ENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            + V+ HIS +R+KL         +++ R +GY I
Sbjct: 192 RS-VDVHISNIRQKLAGLTNHAINIETVRSIGYRI 225


>gi|300868611|ref|ZP_07113225.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300333370|emb|CBN58417.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 245

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAE 127
           + +P++ ++     Q  ++ F+SG DD + KP    E+LARV A+ R   R+  +   AE
Sbjct: 75  ADIPVLMLTALGQTQDKVEGFNSGADDYLTKPFELEEMLARVRALLRRTDRIPQAAKHAE 134

Query: 128 T---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               GP+ +  +  +     ++  L   E  +L  L+   G+ V+ ++I   ++G +D  
Sbjct: 135 ILSYGPLTLVPERFEAIWYAQIVKLTHLEFELLHCLLQRHGQTVSPSEILKEVWG-YDPD 193

Query: 185 VEENVVESHISKLRKKL 201
            +   +  HI  LR K+
Sbjct: 194 DDIETIRVHIRHLRTKM 210


>gi|229062765|ref|ZP_04200070.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228716525|gb|EEL68228.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  N       + +F D     V+  G+   L +RE  +L +L+ N+   +++  + + +
Sbjct: 122 IQQNETNFFQFKDLFVDASSHIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 182 WG-YNVVVNPNVVDLYIGYVRKKLKCEKKERYIQTIHGRGYSM 223


>gi|229181521|ref|ZP_04308848.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228601954|gb|EEK59448.1| DNA-binding response regulator [Bacillus cereus 172560W]
          Length = 206

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 43  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 102

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 103 KTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 162

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 163 KVWG-FEYIGNTRAVDIMVQRLRKKL 187


>gi|253701719|ref|YP_003022908.1| transcriptional regulator [Geobacter sp. M21]
 gi|251776569|gb|ACT19150.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 235

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ R IR  SQVP+I +S        +   D+G DD + KP    E+LAR+ A  RR  
Sbjct: 69  IEVIRRIREWSQVPIIVLSVREREDDKVAALDAGADDYLTKPFGVGELLARMRASLRRSA 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++S     +G + V  + R   V+G    L   E  +L  L+ +  K +  +QI   I+
Sbjct: 129 VQLSEPVFSSGDLTVDLNLRRVTVEGGEVQLTPTEYDLLRLLITHADKVITHSQILKQIW 188

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G+  +  +  V+   IS LRKK+
Sbjct: 189 GVAYQE-QPQVLRVTISNLRKKI 210


>gi|153835164|ref|ZP_01987831.1| response regulator receiver domain protein [Vibrio harveyi HY01]
 gi|148868358|gb|EDL67480.1| response regulator receiver domain protein [Vibrio harveyi HY01]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE  R++R   + VP+I ++    L+  L  F+SG DD + KP    E+L RV  + RR 
Sbjct: 66  LEFSRVLREQGNDVPIIMLTAKDKLEDKLVGFESGADDYMTKPFAFEELLMRVKVLSRRR 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  + G + V    +      +V  +      ILE L+ +  K V++  I   ++G
Sbjct: 126 SGEVSIFKLGELTVNLTEKTVCRNDDVIKVSPTGFSILEVLLRSSPKPVSREYIIQTVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   E N ++ H+ KLR  L        + + + +G+S++
Sbjct: 186 --DAQPETNSLKVHMFKLRSALDGNYEKKLIHTIKGVGFSLN 225


>gi|194365569|ref|YP_002028179.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194348373|gb|ACF51496.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 249

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 49/247 (19%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK 56
           + ++++D A + D   A    +G+    + +G ++L+    L  SAR D+  ++      
Sbjct: 21  LVLIVEDEAEIADILTAYLEREGLRTLRAADGHSALD----LHRSARPDLVLLD------ 70

Query: 57  GEKVLELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
               ++LPR+        +R   + P+I ++        L     G DD V KP +  E+
Sbjct: 71  ----VQLPRLDGWSVLTQLRQRGETPVIMLTALDQDLDKLTALRMGADDYVVKPFNPAEV 126

Query: 109 LARVAAIYRR-LKVSNNRAET----GPIRVFSDGRDPEVQGEVFP----LPRRERRILEY 159
            ARV A+ RR L+ S   A T    GP+ + S      V+GE +     L   E ++L +
Sbjct: 127 AARVRAVLRRTLRTSRVDAPTALRVGPLLIDSATHAVHVEGEGYSHEVLLTLTEFKLL-H 185

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEEN-----VVESHISKLRKKLRNKLGFDPVD-SK 213
            MA     +A T+IFS    L  E + E+      V+SH+SKLR+KL +++G   V  S 
Sbjct: 186 CMA-----LAPTRIFSR-SELMHECLPESEALERTVDSHVSKLRRKL-DEVGMVNVPASV 238

Query: 214 RFLGYSI 220
           R +GY +
Sbjct: 239 RGVGYRL 245


>gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 240

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 8/141 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ET 128
           + P++ ++   ++   +   D+G DD + KP    E+LARV A+ RR   S+N++   + 
Sbjct: 86  ETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRR--ESDNKSTVLQV 143

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + + +  R          L  +E  +LEYLM N  + + +TQI   ++  +D +   N
Sbjct: 144 GDLVMDTVSRQVRRGDREINLTNKEYALLEYLMRNPNRVLTRTQIAEHVWD-YDFSGMSN 202

Query: 189 VVESHISKLRKKLRNKLGFDP 209
           +V+ +I  LR+K+ +   F+P
Sbjct: 203 IVDVYIRYLRRKIDDN--FEP 221


>gi|78063277|ref|YP_373185.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. 383]
 gi|77971162|gb|ABB12541.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. 383]
          Length = 227

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 103/218 (47%), Gaps = 19/218 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  + +DG++  G +  E EE+       D+  ++  L   G+    L + +
Sbjct: 18  KGLTEAGYVVDWVEDGIT--GQHQAETEEY-------DLLVLDVML--PGQDGWTLLQNL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           R     P++ ++    +   +   + G DD + KP    E+ AR+ +I RR +   +N  
Sbjct: 67  RRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQPRDSNTL 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
               + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ + F+   
Sbjct: 127 RVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDMNFNS-- 184

Query: 186 EENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           + NVV+S I +LR K+ +   +DP  + + R +GY ++
Sbjct: 185 DTNVVDSAIRRLRSKIDD--AYDPKLIHTVRGMGYVLE 220


>gi|94314717|ref|YP_587926.1| winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93358569|gb|ABF12657.1| two component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 242

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 13/165 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ + +RA + + P++ ++   ++   +   ++G DD + KP   +E+ AR+ A+ RR 
Sbjct: 67  LDVLKTLRARNVRTPVLILTARDAVADRVAGLNAGADDYLIKPFDLQELAARMHALVRR- 125

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +  RAE     G I +    R+    G    L  RE  +L  LMA  GK  +  Q+  
Sbjct: 126 --AEGRAEPVLRYGDIMLNPATREATQAGASVRLSAREFALLSALMARPGKVWSVPQLQE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG +D+ V  N VE +I  LR+K    L    + + R +GY I
Sbjct: 184 RLYG-WDDEVGSNTVEVYIHALRRKFGAAL----IRNIRGVGYVI 223


>gi|294501968|ref|YP_003565668.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
 gi|294351905|gb|ADE72234.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
          Length = 235

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 20/202 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY      DGV      +LE  E +Q     ++  ++  L  K    +E+ R +R 
Sbjct: 22  LQKEGYEVFCAYDGV-----EALEKVEEVQP----EMILLDIMLPQKDG--MEVCREVRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--------V 121
              +P+I ++   S    +   + G DD V KP   RE+LARV A  RR +         
Sbjct: 71  KYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQVAAPTEES 130

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N    G + +  D      +GE   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 131 ETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-Y 189

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D   +   V+  + +LR+K+ +
Sbjct: 190 DYFGDVRTVDVTVRRLREKIED 211


>gi|293376525|ref|ZP_06622753.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325845461|ref|ZP_08168752.1| response regulator ArlR [Turicibacter sp. HGF1]
 gi|292644751|gb|EFF62833.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325488480|gb|EGC90898.1| response regulator ArlR [Turicibacter sp. HGF1]
          Length = 226

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 18/142 (12%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            D G DD + KP    E+LAR+  + RR         T  +R      D E+    + L 
Sbjct: 91  LDLGADDYLTKPFATEELLARIRVLLRR----QGEITTDTLRF----HDAELNLSTYELS 142

Query: 151 R---------RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
                     +E  IL YL +N  + V K  +   ++G FD  VE N VE +IS LRKKL
Sbjct: 143 CGVKSVKLGLKEFNILNYLFSNGNQIVTKELLIEKVWG-FDADVEYNNVEVYISFLRKKL 201

Query: 202 RNKLGFDPVDSKRFLGYSIDWN 223
                   + + R +GY +  N
Sbjct: 202 SFIKSNVIIRTVRGVGYCLGVN 223


>gi|260772017|ref|ZP_05880934.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
 gi|260612884|gb|EEX38086.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 15/135 (11%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFP 148
           G DD + KP   RE+LAR+ AI RR +       ++  E   I+V+   ++   QG++  
Sbjct: 93  GADDYLPKPFSDRELLARIRAILRRTQHQSVHKPSDVIECQDIQVYPGKQEAYCQGQLLD 152

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKLRNK 204
           L   E  +L +   N G+ + K  +   + G     FD A     ++ H+S LRKKL  +
Sbjct: 153 LTTTEFALLGHFAQNPGETLTKEMLSLDVLGKRLAAFDRA-----IDMHVSNLRKKLPER 207

Query: 205 LGFDP-VDSKRFLGY 218
           +   P + + R  GY
Sbjct: 208 VDGKPRIKTLRGRGY 222


>gi|256855119|ref|ZP_05560480.1| two-component system response regulator [Enterococcus faecalis T8]
 gi|300862210|ref|ZP_07108290.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|256709632|gb|EEU24679.1| two-component system response regulator [Enterococcus faecalis T8]
 gi|300848735|gb|EFK76492.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
          Length = 231

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 17/148 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +++P++ ++      + +    SG DD + KP    E +ARV ++ RR    N+  
Sbjct: 68  IRETNRLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTNFNSLH 127

Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           E  PI   +        + R    +     LP +E  IL Y   N+GK + K QIF  ++
Sbjct: 128 E--PIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFEKVW 185

Query: 179 G---LFDEAVEENVVESHISKLRKKLRN 203
               ++D    +N + + ISKLRKK+ +
Sbjct: 186 QEPYVYD----DNNIMAIISKLRKKIED 209


>gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
          Length = 224

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ R+  + RR+K
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 120

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I V    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKL 205


>gi|194290067|ref|YP_002005974.1| DNA-binding response regulator in two-component regulatory system
           with phor [Cupriavidus taiwanensis LMG 19424]
 gi|193223902|emb|CAQ69911.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Cupriavidus taiwanensis LMG 19424]
          Length = 235

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
           Q+P+I ++     Q  +   ++G DD V KP   +E+LAR+ A+ RR         + ++
Sbjct: 76  QIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--L 180
             R +    RV        ++ ++ P    E R+L +LM +  +  +++Q+   ++G  +
Sbjct: 136 GLRLDPATHRVTGQDESGPIKLDLGPT---EFRLLHFLMTHPERVHSRSQLLDQVWGDHV 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F   VEE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 193 F---VEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229


>gi|15896015|ref|NP_349364.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025797|gb|AAK80704.1|AE007774_1 Response regulator (CheY receiver domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325510169|gb|ADZ21805.1| Response regulator (CheY receiver domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 3/160 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E+  +I+  S +P+I ++    +   +   + G DD + KP   +E+LAR+ A  R    
Sbjct: 69  EVCSLIKKASNIPIIMLTAKDEIDDKVLGLNLGADDYMIKPFSFKELLARINARLRNSFS 128

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N+   GP  +     +   + ++  L   E  +L+YL+ N G  ++K QI   ++G 
Sbjct: 129 ETLNKVVIGPFLIKDSAHEIIYKDDILSLSPTEYNLLKYLLLNNGIALSKDQILEKVWG- 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E+N+VE +I  LR K+ +K     + + R +GY +
Sbjct: 188 YDFTGEKNIVEVYIRYLRDKISDK-NHTIIRTVRGVGYKV 226


>gi|33599368|ref|NP_886928.1| transcriptional regulatory protein [Bordetella bronchiseptica RB50]
 gi|33566964|emb|CAE30877.1| transcriptional regulatory protein [Bordetella bronchiseptica RB50]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 5/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P++ +S   ++   +D   +G DD + KP    E++AR+ A+ RR +   +  E    
Sbjct: 74  KTPVLVLSALSAVDDRVDGLRAGGDDYLVKPFSFSELVARLDALVRRTRPDPDVKELRIA 133

Query: 132 RVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            +  +    +VQ    P  L  +E R+L YLM +  + V +T +   I+G  FD   + N
Sbjct: 134 DLSVNVATQKVQRAGVPISLQPQEFRLLVYLMLHAHRIVTRTMLLETIWGYSFDP--QSN 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V++  +S+LR+K+        + + R  GY++
Sbjct: 192 VIDVQVSRLRRKIDTASATPLIHTVRGAGYTL 223


>gi|331700440|ref|YP_004397399.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329127783|gb|AEB72336.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 238

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 21/203 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY      DG           EE LQ     D   I   L+      LE+ R +R 
Sbjct: 22  LTKEGYEVSVAYDG-----------EEALQQVKDVDPDLIILDLMLPKVDGLEVAREVRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRA 126
               P+I ++   S    +   + G DD V KP  +RE++ARV A  RR      SNN  
Sbjct: 71  TKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGTNSSSNNEE 130

Query: 127 E------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +       G + +  +      +GE   L  RE  +L YL  + G+ + +  +   ++G 
Sbjct: 131 DENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREHLLQTVWG- 189

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
           +D   +   V+  + +LR+K+ +
Sbjct: 190 YDYFGDVRTVDVTVRRLREKVED 212


>gi|319949366|ref|ZP_08023436.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Dietzia
           cinnamea P4]
 gi|319436970|gb|EFV92020.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Dietzia
           cinnamea P4]
          Length = 220

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 81/151 (53%), Gaps = 9/151 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPI 131
           P+I ++   S+  T++  +SG +D + KP    E+LAR+    R  + + +    E   +
Sbjct: 76  PVIILTARDSVANTVEGLESGANDYMVKPFRVPELLARIRLRLREHEATEDPGILEHAGM 135

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190
           R+    R  EV G +  L  RE  +LE L+ N+G+ +++ Q+  +++G+ FD     N+V
Sbjct: 136 RLDIRTRRVEVDGRIQELTNREYSLLEMLLRNKGETISREQLLESVWGMDFDPG--SNIV 193

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +I    + LR K+G + V + R +GY ++
Sbjct: 194 NVYI----RSLRRKIGENKVQTVRGVGYRVE 220


>gi|332652639|ref|ZP_08418384.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332517785|gb|EGJ47388.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 64/141 (45%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L    R     P+I ++   + +  +  F  G DD V KP     +  RV A+ RR  
Sbjct: 61  LDLCAGFRQARDTPVIFLTANDADEDVVRGFQMGGDDYVTKPFAPEVLRQRVLAVLRRTG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +  + +    QGE   L   E ++LE L  +RG+ + +T +   I+ +
Sbjct: 121 SGAQIIRYQELEIDLERQTVRRQGETIHLTATEWKLLERLARSRGRVLTRTMLLEQIWDV 180

Query: 181 FDEAVEENVVESHISKLRKKL 201
               ++EN +  HI +LR+KL
Sbjct: 181 EGSFIDENTLSVHIRRLRQKL 201


>gi|297528744|ref|YP_003670019.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297251996|gb|ADI25442.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 223

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 11/143 (7%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV 142
           ++Q  +   ++G DD + KP    E++AR+ A+ RR  V   + E      F+  R    
Sbjct: 84  AVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRTFVP-LQEEKVAFHGFTLNRTSHT 142

Query: 143 ----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
                 E+F  P RE ++L+ L+ N+G+ V +  I   ++G +D  V    +++ I  LR
Sbjct: 143 LHRGDEEIFLTP-REFQLLDLLVQNQGQVVPRETILDRVWG-WDADVSMKTIDATIKLLR 200

Query: 199 KKLRNKLGFDPVDSKRFLGYSID 221
           KKL++    D + + R +GY ID
Sbjct: 201 KKLKD----DVIQTVRGVGYKID 219


>gi|262373013|ref|ZP_06066292.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262313038|gb|EEY94123.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 223

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 81/159 (50%), Gaps = 6/159 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +I+R  S+VP+I ++    +   +   + G DD + KP  + E+LARV ++ RR +  N 
Sbjct: 64  KILRQFSKVPVIFLTAKDQILDRVKGLELGADDYLAKPFSYIELLARVKSLLRR-QQYNQ 122

Query: 125 RAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
             E     +  D    +V  E  +  L ++E  +L +++ ++ + + + QI S ++ + F
Sbjct: 123 ENEFSIASLKMDLTQHKVWREDTLIDLSKKEFNLLRFMLLHQNEIITRRQIASEVWNINF 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   + N ++  + +LR K+ +      + + R LGY +
Sbjct: 183 D--TDTNFIDVAVRRLRSKIDDGHDLKLIHTIRGLGYKL 219


>gi|257865655|ref|ZP_05645308.1| response regulator [Enterococcus casseliflavus EC30]
 gi|257871990|ref|ZP_05651643.1| response regulator [Enterococcus casseliflavus EC10]
 gi|257799589|gb|EEV28641.1| response regulator [Enterococcus casseliflavus EC30]
 gi|257806154|gb|EEV34976.1| response regulator [Enterococcus casseliflavus EC10]
          Length = 233

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 12/148 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL +IIR     P+I IS     Q  +   D G DD V KP    E+ AR+    R  +
Sbjct: 62  MELLKIIRKRMNTPIIVISARKDEQDKVQALDLGADDYVTKPFSTNELFARIRTALRHKE 121

Query: 121 VSNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +     + PI V       F      + Q E+  L + E RI+  +  N GK V    +
Sbjct: 122 TA--AFSSSPILVNKELTIDFEKKILYKNQNEIH-LTKNEYRIMAVMFKNLGKVVTYDTL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            S ++G F  A +   +  +IS +RKK+
Sbjct: 179 TSEVWGPF--AADAQTLRVNISNIRKKI 204


>gi|238026792|ref|YP_002911023.1| response regulator [Burkholderia glumae BGR1]
 gi|237875986|gb|ACR28319.1| Response regulator [Burkholderia glumae BGR1]
          Length = 235

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 78  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 137

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R +    RV +     E++ ++ P    E R+L + M +  +  ++TQ+   ++G  D
Sbjct: 138 GLRLDPATHRVAASAEGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 192

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 193 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|271961705|ref|YP_003335901.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504880|gb|ACZ83158.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 11/190 (5%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           W+ S    DV  ++  L  +        R+  A +  P++ ++    +    +  D+G D
Sbjct: 38  WMASENVYDVIVLDVML-PRMNGYTVCARLRDAENWTPILMLTAKDGVHDEAEALDTGAD 96

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV----QGEV-FPLPR 151
           D ++KP  +  +LAR+ A+ RR      RA    I V     DP      +GEV   L  
Sbjct: 97  DFLSKPFSYVVLLARLRALIRR----GGRARPVSITVGDLTVDPAGLRCRRGEVEIALTP 152

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           +E  +L  L    G+ V+K+++ +  +  F    + N+VE +IS LR+K+ +  G   + 
Sbjct: 153 KEFAVLHGLARRPGEVVSKSELLAQAWD-FSYDGDPNIVEVYISALRRKIDSPFGRSSLV 211

Query: 212 SKRFLGYSID 221
           + R  GY ++
Sbjct: 212 TVRGAGYRLE 221


>gi|229056843|ref|ZP_04196242.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228720493|gb|EEL72062.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 96/230 (41%), Gaps = 22/230 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +LIDD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 7   LLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR   
Sbjct: 65  DICPIIRQKTDCPIFFLTAKTSDVDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N + +   I  FS GR        +  V G V     +  ++L +   N     +K ++
Sbjct: 125 QNIQEQR--IYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +  ++G      ++N V  HI KLR+K+      DP     + + R LGY
Sbjct: 183 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQ----DPSKPEYIKTVRGLGY 228


>gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 224

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ R+  + RR+K
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 120

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I V    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KTEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKL 205


>gi|229148989|ref|ZP_04277234.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634529|gb|EEK91113.1| Two-component response regulator [Bacillus cereus m1550]
          Length = 242

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 135

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N   +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 136 TNEHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 237


>gi|189348733|ref|YP_001941929.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221215703|ref|ZP_03588664.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD1]
 gi|189338871|dbj|BAG47939.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221164405|gb|EED96890.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD1]
          Length = 239

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R  RA ++  P+I  S   S    +   + G DD + KP    E++AR
Sbjct: 56  LMLPGVDGLEICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVAR 115

Query: 112 VAAIYRRLK--VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164
           V A+ RR+     ++R + G + V     DP      V G    L  RE  +L +   + 
Sbjct: 116 VKALLRRVDALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHP 175

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           GK  ++  + +A++G   E   E+ V +HI++LR K+      DP +  R L
Sbjct: 176 GKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAEPVRIL 222


>gi|187776729|ref|ZP_02993202.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
 gi|187775388|gb|EDU39190.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 40/229 (17%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+K+GY   F  +G           EE L     E    I   ++       E  ++IR 
Sbjct: 22  LIKEGYEVKFSYNG-----------EEALNKIKNEKFDLILMDIMMPKIDGFEAIKVIRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
            +  P+I ++   + Q  +  F SG DD + KP    E+  R++AI RR  V     +  
Sbjct: 71  FTNTPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLIELSLRMSAILRRSNVREFEDDKY 130

Query: 130 PIRVFSDGRDPEV----------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            I++    +D E+          +GE+   P +E  IL  L  N+G+    ++++  ++G
Sbjct: 131 IIKI----KDLELNLKEHTLYKGEGEITLTP-KEFDILCLLARNKGRVFPSSELYERVWG 185

Query: 180 LFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221
              E +E +N + +HI  LR+KL      D V + +++      GY I+
Sbjct: 186 --QEFLENDNSLLTHIRNLREKLN-----DTVKNSKYIKTVWGVGYKIE 227


>gi|183598162|ref|ZP_02959655.1| hypothetical protein PROSTU_01539 [Providencia stuartii ATCC 25827]
 gi|188020327|gb|EDU58367.1| hypothetical protein PROSTU_01539 [Providencia stuartii ATCC 25827]
          Length = 227

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L+L R +R  S +P+I +S        +   D+G DD + KP    E+LARV    RR  
Sbjct: 63  LDLIRDLRQWSSIPIIVLSAREEESQKVAALDAGADDYLTKPFGVSELLARVRVALRRFG 122

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           KV+   A  + G + +    R    Q E   L   E R+L  L+AN GK + +  +   +
Sbjct: 123 KVTQENAIFQFGDVTIDFINRLVTKQNEELHLTPIEFRLLSELVANSGKVLTQRHLLLQV 182

Query: 178 YGLFDEAVEEN-VVESHISKLRKKLRN 203
           +G     VE N  +  ++  LR+KL N
Sbjct: 183 WG--PNYVEHNHYLRIYMGHLRQKLEN 207


>gi|121281851|gb|ABM53484.1| putative two component transcriptional regulator winged helix
           family [uncultured bacterium CBNPD1 BAC clone 67]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL R +RA    VP++ ++    +   +   ++G DD + KP    E++ARV A+ RR 
Sbjct: 60  LELVRELRAAGNAVPVLVLTARDGVPDRVAGLENGADDYLVKPFAIEELIARVRAVLRRP 119

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G I   +  R   +      LPR E   LE LM   G+ V +  +  A+Y
Sbjct: 120 GGALGQELRAGDIIYDAIERVVIIGARNLVLPRHELATLECLMRRLGRVVTREILIDALY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D     N V  HI  LR+KL+       + + R LGY +
Sbjct: 180 G-RDGEPASNAVPVHIHNLRRKLQEAGAQARIITFRGLGYML 220


>gi|86739691|ref|YP_480091.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566553|gb|ABD10362.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 321

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 17/210 (8%)

Query: 3   VLIDDRALVK---DGYIALFG-DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           +++DD ALV    D Y+   G D   + +G  +L   E    +   D+  ++  L   G 
Sbjct: 59  LVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAE----TTPPDLVVLDLML--PGL 112

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +E+ R +RAH  VP+I ++        +   + G DD V KP   RE+  RV ++ RR
Sbjct: 113 DGIEVFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRR 172

Query: 119 LKVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +   AE G +R     V +  R     G    L  RE  +L +L+   G+   + ++
Sbjct: 173 ANETVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGEL 232

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              ++G      + + V  HI +LR+K+ +
Sbjct: 233 LEHVWGW--SYGDPSTVTVHIRRLREKIED 260


>gi|71279117|ref|YP_269981.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H]
 gi|71144857|gb|AAZ25330.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H]
          Length = 232

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 10/158 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G+  L + R I+  S + +I ++        L   + G DD + KP   RE++ARV
Sbjct: 53  LMLPGKDGLTICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARV 112

Query: 113 AAIYRRLK------VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
             I RR+       ++ N   +++T  + + +D     +      L   E  +L  L + 
Sbjct: 113 KTILRRINPPLTTGINTNIAKQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASA 172

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            G+  +++Q+   +Y   +  V E  ++SHI KLRKKL
Sbjct: 173 PGRIYSRSQLIDRVYQ-DNRVVSERTIDSHIKKLRKKL 209


>gi|30261986|ref|NP_844363.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47777985|ref|YP_018600.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|30256612|gb|AAP25849.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47551690|gb|AAT31075.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 71  LRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 131 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 190 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 225


>gi|30023294|ref|NP_834925.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228955506|ref|ZP_04117511.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229147792|ref|ZP_04276135.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229193510|ref|ZP_04320457.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|29898855|gb|AAP12126.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228590042|gb|EEK47914.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228635805|gb|EEK92292.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228804298|gb|EEM50912.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 224

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKL 205


>gi|66045272|ref|YP_235113.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63255979|gb|AAY37075.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 259

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 81  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 140

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 141 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 198

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 199 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 237


>gi|16762974|ref|NP_458591.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29144461|ref|NP_807803.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213420191|ref|ZP_03353257.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213427225|ref|ZP_03359975.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581684|ref|ZP_03363510.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609432|ref|ZP_03369258.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213650815|ref|ZP_03380868.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213854794|ref|ZP_03383034.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828852|ref|ZP_06546595.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25300973|pir||AD1022 two-component response regulator pmrA [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505281|emb|CAD09277.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140099|gb|AAO71663.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56540681|gb|AAV92794.1| PmrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 222

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRIRQKKYTLPVLILTARDTLNDRISGLDVGADDYLVKPFALEELHARIRALLRRHNN 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L V N     G  + + DG++         L  +E  +L  LM   G  V +  +
Sbjct: 122 QGESELTVGNLTLNIGRHQAWRDGQE-------LTLTPKEYALLSRLMLKAGSPVHREIL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ IY  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 175 YNDIYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRRFGYML 216


>gi|330940340|gb|EGH43447.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 255

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 77  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 136

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 137 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 194

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 195 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 233


>gi|330720947|gb|EGG99119.1| hypothetical protein imdm_1487 [gamma proteobacterium IMCC2047]
          Length = 221

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + IRA  +  P++ ++   +L   ++ F +G DD + KP    E+L R+ A+  R 
Sbjct: 61  LTLCQKIRARGNDTPVLMLTARNTLTNKVEGFSAGADDYLLKPFEVEELLLRLYALSGRR 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  +TG + +  + R   +  E   L     ++LE L+      V+++++   I+G
Sbjct: 121 SGQASLLKTGNLSLNLNNRTGTINDEPIKLTPTTFKLLETLLRASPNPVSQSELVQRIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
             D+  + N +  HI KLR  LR K
Sbjct: 181 --DDIPDSNKLRVHIHKLRNALREK 203


>gi|325510882|gb|ADZ22518.1| DNA-binding response regulator [Clostridium acetobutylicum EA 2018]
          Length = 138

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 67/127 (52%), Gaps = 3/127 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPR 151
           G DD + KP + + ++AR+A++ RR   SN+        +++          G    L +
Sbjct: 10  GADDFITKPYNTQILVARIASVLRRAHGSNSLDTIFYNDLKLNLSNGSITYHGNTTELTK 69

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
            E +IL  L+ N+GK V++  + + ++   D  V++N +  +++ LRKKL      + ++
Sbjct: 70  NELKILSCLIKNKGKIVSRDDLMNFMWN-SDIFVDDNNLSVNVTILRKKLEEVGMKENIE 128

Query: 212 SKRFLGY 218
           ++R LGY
Sbjct: 129 TRRGLGY 135


>gi|299770126|ref|YP_003732152.1| AdeR [Acinetobacter sp. DR1]
 gi|298700214|gb|ADI90779.1| AdeR [Acinetobacter sp. DR1]
          Length = 247

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR +++N   
Sbjct: 78  IRQKAQTPVIMLTALDQDIDKVMALRVGADDFVVKPFNPNEVIARVQAVLRRTQLTNKPF 137

Query: 124 NRAET-GPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N+ +    I + +D     +  +    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 138 NKNKVYKDIEIDTDTHSVYLHAQNKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D    E  V+SH+SKLRKKL  +     + + R +GY +D
Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGILQMLINVRGVGYRLD 238


>gi|262280150|ref|ZP_06057935.1| transcriptional regulatory protein rstA [Acinetobacter
           calcoaceticus RUH2202]
 gi|299771423|ref|YP_003733449.1| Transcriptional regulatory protein rstA [Acinetobacter sp. DR1]
 gi|262260501|gb|EEY79234.1| transcriptional regulatory protein rstA [Acinetobacter
           calcoaceticus RUH2202]
 gi|298701511|gb|ADI92076.1| Transcriptional regulatory protein rstA [Acinetobacter sp. DR1]
          Length = 238

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 12/180 (6%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           S + D+  ++  L   G   L + R +R H   P++ ++        +   + G DD V 
Sbjct: 49  SEQPDLVVLDVML--PGADGLTVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVA 106

Query: 101 KPIHHREILARVAAIYRRLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           KP+  R +LAR+ A+ RR   +       R E   + + + GR   + GE+      E  
Sbjct: 107 KPVQPRVLLARIRALLRRTDKTVEDEVAQRIEFDDLVIDNGGRSVTLHGELVDFTSAEYD 166

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +L  L +N G+ +++  IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 167 LLWLLASNAGRILSREDIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 221


>gi|257464655|ref|ZP_05629026.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Actinobacillus minor 202]
 gi|257450315|gb|EEV24358.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Actinobacillus minor 202]
          Length = 232

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 12/172 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VL++ R  +A  + P++ ++    ++  +  F+ G DD + KP    E+LARV  + 
Sbjct: 59  GWQVLQMLR--QAEKKFPILLLTAKDQVEDKVKGFELGADDYLVKPFAFAELLARVRTLL 116

Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR+     + +T  +++ +D       R     G    L  +E  +LE L+  +G+ + +
Sbjct: 117 RRIPNEEKKIQTTSLKI-ADLELDLLKRKVSRAGHRIDLTSKEFALLELLIQRQGEVLPR 175

Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I S ++ + FD   + NV++  I +LR K+ +      + + R +GY +D
Sbjct: 176 MLIASHVWDMNFDS--DTNVIDVAIRRLRNKIDDSYTPKLIHTVRGVGYVLD 225


>gi|228957071|ref|ZP_04118843.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802604|gb|EEM49449.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N   +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 119 TNEHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYPW 220


>gi|229153423|ref|ZP_04281601.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228630027|gb|EEK86678.1| DNA-binding response regulator [Bacillus cereus m1550]
          Length = 224

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KTEVAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKL 205


>gi|167624453|ref|YP_001674747.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354475|gb|ABZ77088.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 224

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130
           + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR          +G 
Sbjct: 72  KAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPLISSGA 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    +   +      +   E  ILEYLM +  + VAK ++   IYG  D+  + N +
Sbjct: 132 LELDLAAKQVTLNELPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDPNTI 189

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 190 EVMVSRLRKKLTKGGIENPIITIRGQGYKFN 220


>gi|23501499|ref|NP_697626.1| DNA-binding response regulator [Brucella suis 1330]
 gi|62289574|ref|YP_221367.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|148560055|ref|YP_001258605.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|161618587|ref|YP_001592474.1| transcriptional activator protein copR [Brucella canis ATCC 23365]
 gi|225627119|ref|ZP_03785157.1| Transcriptional activator protein copR [Brucella ceti str. Cudo]
 gi|254688895|ref|ZP_05152149.1| transcriptional activator protein copR [Brucella abortus bv. 6 str.
           870]
 gi|254693376|ref|ZP_05155204.1| transcriptional activator protein copR [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697027|ref|ZP_05158855.1| transcriptional activator protein copR [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701406|ref|ZP_05163234.1| transcriptional activator protein copR [Brucella suis bv. 5 str.
           513]
 gi|254703951|ref|ZP_05165779.1| transcriptional activator protein copR [Brucella suis bv. 3 str.
           686]
 gi|254707671|ref|ZP_05169499.1| transcriptional activator protein copR [Brucella pinnipedialis
           M163/99/10]
 gi|254709746|ref|ZP_05171557.1| transcriptional activator protein copR [Brucella pinnipedialis
           B2/94]
 gi|254713749|ref|ZP_05175560.1| transcriptional activator protein copR [Brucella ceti M644/93/1]
 gi|254717193|ref|ZP_05179004.1| transcriptional activator protein copR [Brucella ceti M13/05/1]
 gi|254718761|ref|ZP_05180572.1| transcriptional activator protein copR [Brucella sp. 83/13]
 gi|254729926|ref|ZP_05188504.1| transcriptional activator protein copR [Brucella abortus bv. 4 str.
           292]
 gi|256031236|ref|ZP_05444850.1| transcriptional activator protein copR [Brucella pinnipedialis
           M292/94/1]
 gi|256060744|ref|ZP_05450908.1| transcriptional activator protein copR [Brucella neotomae 5K33]
 gi|256159339|ref|ZP_05457129.1| transcriptional activator protein copR [Brucella ceti M490/95/1]
 gi|256254644|ref|ZP_05460180.1| transcriptional activator protein copR [Brucella ceti B1/94]
 gi|256257143|ref|ZP_05462679.1| transcriptional activator protein copR [Brucella abortus bv. 9 str.
           C68]
 gi|256369051|ref|YP_003106559.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260168372|ref|ZP_05755183.1| DNA-binding response regulator [Brucella sp. F5/99]
 gi|260566800|ref|ZP_05837270.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260754380|ref|ZP_05866728.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260757599|ref|ZP_05869947.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761425|ref|ZP_05873768.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883405|ref|ZP_05895019.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261213626|ref|ZP_05927907.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|261219009|ref|ZP_05933290.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261221819|ref|ZP_05936100.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261315167|ref|ZP_05954364.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261317277|ref|ZP_05956474.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261321491|ref|ZP_05960688.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324734|ref|ZP_05963931.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751945|ref|ZP_05995654.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261754603|ref|ZP_05998312.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261757832|ref|ZP_06001541.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265983739|ref|ZP_06096474.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|265988315|ref|ZP_06100872.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265997783|ref|ZP_06110340.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|294851980|ref|ZP_06792653.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297247989|ref|ZP_06931707.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306838737|ref|ZP_07471572.1| DNA-binding response regulator [Brucella sp. NF 2653]
 gi|306842118|ref|ZP_07474787.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|306845218|ref|ZP_07477794.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|23347405|gb|AAN29541.1| DNA-binding response regulator [Brucella suis 1330]
 gi|62195706|gb|AAX74006.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|148371312|gb|ABQ61291.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|161335398|gb|ABX61703.1| Transcriptional activator protein copR [Brucella canis ATCC 23365]
 gi|225617954|gb|EEH14998.1| Transcriptional activator protein copR [Brucella ceti str. Cudo]
 gi|255999211|gb|ACU47610.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260156318|gb|EEW91398.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260667917|gb|EEX54857.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671857|gb|EEX58678.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674488|gb|EEX61309.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872933|gb|EEX80002.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260915233|gb|EEX82094.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260920403|gb|EEX87056.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|260924098|gb|EEX90666.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261294181|gb|EEX97677.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296500|gb|EEX99996.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300714|gb|EEY04211.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261304193|gb|EEY07690.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261737816|gb|EEY25812.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261741698|gb|EEY29624.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261744356|gb|EEY32282.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262552251|gb|EEZ08241.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|264660512|gb|EEZ30773.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|264662331|gb|EEZ32592.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|294820569|gb|EFG37568.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297175158|gb|EFH34505.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306274377|gb|EFM56184.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|306287705|gb|EFM59136.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|306406224|gb|EFM62468.1| DNA-binding response regulator [Brucella sp. NF 2653]
          Length = 235

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 13/156 (8%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   +    +G DD + KP    E+LARV  + RR   S   A+T   
Sbjct: 72  ETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRR--SSPREADTIYR 129

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            G + +         Q     L  RE R+LEYLM + G+ V +T +   ++   FD   +
Sbjct: 130 VGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP--Q 187

Query: 187 ENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            NV++ HIS+LR K+    GFD   + + R  GY +
Sbjct: 188 TNVIDVHISRLRSKIEK--GFDEPLLHTVRGAGYML 221


>gi|27468287|ref|NP_764924.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867182|ref|YP_188829.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis RP62A]
 gi|242242958|ref|ZP_04797403.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811087|ref|ZP_04825560.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875886|ref|ZP_06284753.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366360|ref|ZP_06613039.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315833|gb|AAO04968.1|AE016748_202 alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637840|gb|AAW54628.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis RP62A]
 gi|242233559|gb|EES35871.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805384|gb|EES58041.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294911|gb|EFA87438.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319485|gb|EFE59852.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis M23864:W2(grey)]
 gi|319401007|gb|EFV89226.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus epidermidis FRI909]
 gi|329724661|gb|EGG61167.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU144]
 gi|329733744|gb|EGG70070.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU045]
 gi|329737321|gb|EGG73575.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU028]
          Length = 236

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 11/138 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---------TGPIRVFSDGRDPEVQG 144
           G DD + KP   RE++ARV AI RR +  N   +          G IR+  +  +   + 
Sbjct: 96  GADDYMTKPFSPREVVARVKAILRRSQFVNEIEKEDVDDEDIIIGSIRIRPEFFEVYKED 155

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RN 203
           E+  L  +E  +L YL+  +G+ + +  + ++++  ++ A +  +V+ HIS LR KL  N
Sbjct: 156 ELLELTPKEFELLLYLIERQGRVITREHMLNSVWN-YEFAGDSRIVDVHISHLRDKLEEN 214

Query: 204 KLGFDPVDSKRFLGYSID 221
                 + + R LGY ++
Sbjct: 215 PKQPKLIKTVRGLGYKLE 232


>gi|88802016|ref|ZP_01117544.1| response regulator DrrA [Polaribacter irgensii 23-P]
 gi|88782674|gb|EAR13851.1| response regulator DrrA [Polaribacter irgensii 23-P]
          Length = 232

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 8/131 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV---QGEVF 147
           F++G DD + KPI  + ++++V ++ RRLK      ET  I      R+  V    G+  
Sbjct: 98  FEAGADDYITKPIKPKVLVSKVKSLLRRLKSEKQNEETVTIGDIVIDREEYVVFKAGKRI 157

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            LPR+E  +   L +  GK   +  I   ++G  +  V    ++ HI    +KLR K+G 
Sbjct: 158 SLPRKEFELFSLLTSKPGKVFKREVILDTVWG-NEVVVGGRTIDVHI----RKLREKIGD 212

Query: 208 DPVDSKRFLGY 218
           D   + + +GY
Sbjct: 213 DHFKTVKGVGY 223


>gi|15672379|ref|NP_266553.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116511254|ref|YP_808470.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|125623281|ref|YP_001031764.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281490939|ref|YP_003352919.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|12483717|gb|AAG53732.1|AF178425_2 RrC [Lactococcus lactis subsp. cremoris MG1363]
 gi|12723270|gb|AAK04495.1|AE006276_10 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116106908|gb|ABJ72048.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
 gi|124492089|emb|CAL97018.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281374697|gb|ADA64217.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|300070032|gb|ADJ59432.1| Two-component response regulator [Lactococcus lactis subsp.
           cremoris NZ9000]
 gi|326405973|gb|ADZ63044.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 233

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  I  F       E F + + EE L++        I   L+      L
Sbjct: 4   ILVVDDEKPISD--IVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR+ V
Sbjct: 62  DVAREIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121

Query: 122 S------NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +      N + E   G +R+           +   L  RE  +L YL  + G+ + +  +
Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNDKQLDLTHREFELLYYLAQHLGEVITRENL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
              ++G +D   +   V+  + +LR+K+ +       V ++R +GY
Sbjct: 182 LETVWG-YDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGY 226


>gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCRRLRNKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRRFL 122

Query: 121 V--SNNRAETGPIRVFS----DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  S+  +    +  F     D +   V   GE   L  +E ++L++   + G+   KTQ
Sbjct: 123 VLGSDRSSHENKLIKFKGISIDLKKCTVITAGEEVSLTAKEFQLLKFFATHPGQVFTKTQ 182

Query: 173 IFSAIY-GLFDEAVEENVVESHISKLRKKL 201
           +F  ++ G + E  ++N V  HI KLRKK+
Sbjct: 183 LFRNVWDGNYPE--DDNTVMVHIRKLRKKI 210


>gi|330898754|gb|EGH30173.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 132

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFP 148
           G DD + KP   RE++AR+ A+ RR   ++  A   PI V     DP      + G+   
Sbjct: 2   GADDYITKPFSPRELVARLKAVLRRAGPTDGEA---PIEVGGLLLDPISHRVTIDGKPAE 58

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   E R+L++ M ++ +   + Q+   ++G  +  VEE  V+ HI +LRK L
Sbjct: 59  MGPTEYRLLQFFMTHQERAYTRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 110


>gi|326803749|ref|YP_004321567.1| response regulator ArlR [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650418|gb|AEA00601.1| response regulator ArlR [Aerococcus urinae ACS-120-V-Col10a]
          Length = 235

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 12/166 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    VP++ ++   S+   +   D G D  + KP+     LA + +I RR+ +
Sbjct: 65  EVMRRLRQEMTVPILVMTQRSSVIDQVSALDQGADGYLIKPLPIEVFLAHIRSILRRMTI 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQG---------EVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N       R+    RD  V+          EV  L +RE  +L   M N  K +++ +
Sbjct: 125 EANENHIRQTRLVF--RDLLVEKENHLAYRGEEVLDLTKREYDLLVIFMENINKVLSREK 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   ++G F   VE NVV+ +I  LR K+        + + R  GY
Sbjct: 183 LLKDVWG-FQSVVETNVVDVYIRYLRNKIDPNRNQKYIQTIRGAGY 227


>gi|299134256|ref|ZP_07027449.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591003|gb|EFI51205.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 241

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 13/205 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D      G++G  +    S        +    D+  ++  +   GE   
Sbjct: 21  LLLVDDDRRIRDLLSRFLGNEGYRVTTAKSAAAARAKLTGLHFDLLILDVMM--PGETGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  R +R  SQVP+I ++     ++ ++    G DD V KP   RE+L R+A I +R+  
Sbjct: 79  EFARSLRETSQVPIIMLTARHEAESRIEGLQIGADDYVAKPFEPRELLLRIANILKRVAP 138

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V+    E+   GP  V+   R     G EV  L  RER +L  L A+ G  V +     A
Sbjct: 139 VAVETVESVAFGPY-VYHLERGELRNGEEVVHLTDREREMLRILAASPGDTVPR----GA 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           + G       E  V+  I++LR+K+
Sbjct: 194 LTGNGANG-NERAVDVQINRLRRKI 217


>gi|227506355|ref|ZP_03936404.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197006|gb|EEI77054.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 234

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET-- 128
           P++ ++   S+   +     G DD V KP    E++ R+  I RR   +   NN A    
Sbjct: 80  PVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGANVDDVNNDATISY 139

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             + +  D  +    GE+  L   E  +L YLM N+   ++K++I   ++  +D   + N
Sbjct: 140 ADLTLNDDTHEVTKGGEIVELSPTEFNLLRYLMQNKEVVLSKSKILDNVWH-YDFGGDGN 198

Query: 189 VVESHISKLRKKL 201
           VVES+IS LR+K+
Sbjct: 199 VVESYISYLRRKI 211


>gi|283798623|ref|ZP_06347776.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|291073609|gb|EFE10973.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|295090650|emb|CBK76757.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 13/154 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCRELRSSSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 SNNRAE-TGPIRVFSDGRDPEV-----------QGEVFPLPRRERRILEYLMANRGKRVA 169
           +    E  GP +       P++            G    +P +E  +L +L ++  +   
Sbjct: 125 APQPQEPAGPDQKGQYVEFPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + Q+   I+G ++   +   V+ HI +LR+K+++
Sbjct: 185 REQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKD 217


>gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
 gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
          Length = 232

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ +++  E G + +  + R  +V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQHVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|160935974|ref|ZP_02083348.1| hypothetical protein CLOBOL_00871 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441216|gb|EDP18933.1| hypothetical protein CLOBOL_00871 [Clostridium bolteae ATCC
           BAA-613]
          Length = 230

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL + +R+ S +P+I IS     ++ +   D G DD + KP    E+LAR+    R  +
Sbjct: 64  LELIQEVRSTSALPIIVISARTLERSKVAALDLGADDYLTKPFGTAELLARIRTALRHSQ 123

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + + E G + +  + R  +V+G+   L + E +++  L  N GK +    I S 
Sbjct: 124 RAAGTQSLKYEVGDLLIDFERRLVKVKGQDVHLTQIEYKLVSLLAQNAGKVMTYESIISK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           I+G F ++ +  ++  +++ +R+KL
Sbjct: 184 IWGPFADS-DNQILRVNMAHIRRKL 207


>gi|160936855|ref|ZP_02084220.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440236|gb|EDP17982.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
           BAA-613]
          Length = 234

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 17/213 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +  F +    + L+  ++E+V  +   ++  G   L
Sbjct: 6   ILVVDDEKEIADLIEIYLVSDGYKV--FKAENAAKGLEIISKEEVHLVLLDIMMPGMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR ++ +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCKKIRENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   + +NN      + +  D     V  E   L   E  IL  L +N GK  +  
Sbjct: 124 LNPNSASKEKANNEITIKGMTINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGKVFSTD 183

Query: 172 QIFSAIYGLFDEAVEE--NVVESHISKLRKKLR 202
           +IF  ++   +E V E  N V  HI +LR K++
Sbjct: 184 EIFEKVW---NEKVYEANNTVMVHIRRLRGKMK 213


>gi|145594325|ref|YP_001158622.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303662|gb|ABP54244.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 226

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 6/142 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R++R  + +P+I  +     Q+ +    +G DD + KP     + AR+  + RR+  ++ 
Sbjct: 62  RMLRGITDIPIIIATARDDEQSVVRLLRAGADDYMVKPFTGAHLDARITTVLRRVGRASR 121

Query: 125 RA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E G +R+    R  E+ GE   L R+E  +L YL A  G+ V++ ++   ++ 
Sbjct: 122 TVQPAVHEVGGLRIDVGERSAELDGEPLALTRKEFDLLAYLAARPGRVVSRRELLEEVW- 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
                 E+  ++ H+  LR+K+
Sbjct: 181 RQPSVGEDQTIDVHLYWLRRKM 202


>gi|126665480|ref|ZP_01736462.1| response regulator DrrA [Marinobacter sp. ELB17]
 gi|126630108|gb|EBA00724.1| response regulator DrrA [Marinobacter sp. ELB17]
          Length = 233

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 15/171 (8%)

Query: 53  LIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   L + R IR A   VP++ ++   +    +   + G DD + KP    E+ AR
Sbjct: 54  LMLPGLDGLAVCREIRTAPDYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELGAR 113

Query: 112 VAAIYRRLKVSNNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
           + A++RR+   + RA   P         +R+    R   V      L  RE  +L +  +
Sbjct: 114 IKALFRRVDALSARATDAPENREIAVDGLRIDPLRRRVFVNNAEVELTAREFDLLWHFAS 173

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +RG+  ++ Q+  A++G ++    E+ V +HI+    +LRNK+  DP + +
Sbjct: 174 HRGRVFSRAQLLDAVWG-YNHQGYEHTVNTHIN----RLRNKIETDPAEPR 219


>gi|124384287|ref|YP_001028366.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|124292307|gb|ABN01576.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
          Length = 250

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 63  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 121

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q
Sbjct: 122 -----GAGGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQ 176

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 177 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 222


>gi|332662422|ref|YP_004445210.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331236|gb|AEE48337.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 229

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 8/148 (5%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + IR  + Q P++ ++   + +      D G DD + KP    E+ AR+ A+ RR 
Sbjct: 61  LEVCKEIRFGNIQTPILFLTALGASENVALGLDMGADDYLVKPFKFIELNARIKALIRRG 120

Query: 120 KVSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           K +++  +   I      +V  D +  E       L   E R+L  L+ N+G+ +++  +
Sbjct: 121 KSNDSHQQPHTIYTIADLKVDDDAKTVERNASFISLTATEYRLLLVLIKNKGRVLSRVDL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
             + + + +  +E NVV+ +I+ LRKK+
Sbjct: 181 LESAWDI-NFNMETNVVDVYINYLRKKM 207


>gi|329768144|ref|ZP_08259649.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
 gi|328838055|gb|EGF87674.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
          Length = 234

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 22/224 (9%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           D  L K+GY  +  +DG           E+ ++ +  E+   I   L+   +  +E+ R 
Sbjct: 20  DFNLKKEGYDVIVANDG-----------EKAVELAFSENPDLILLDLMLPKKDGMEVCRE 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +RA   +P+I ++   S    +   + G DD V KP   RE++ARV    RR+       
Sbjct: 69  VRAKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTKQQEEV 128

Query: 127 ---ETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              ++G       I ++ +    +  GE   L RRE  +  YL  +RG+ + +  +   +
Sbjct: 129 VEEKSGSDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTRENLLQTV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +G +D   +   V+  + +LR+K+ +     + + ++R +GY I
Sbjct: 189 WG-YDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGYFI 231


>gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 331

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 6/142 (4%)

Query: 65  RIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---- 119
           R +RA H   P+I ++        L   +SG DD V KP   RE++ARV A+  R     
Sbjct: 168 REMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLNRTMPKP 227

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + + +      V GE   L  +E  +L +L +N+G  +++ +I   ++ 
Sbjct: 228 AAASDTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQKVWN 287

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +D   E+  V++H+  LR  L
Sbjct: 288 -YDYFGEDRTVDTHVKMLRGHL 308


>gi|301383835|ref|ZP_07232253.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato Max13]
 gi|302133400|ref|ZP_07259390.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|331016289|gb|EGH96345.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 267

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 89  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 148

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 149 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 206

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 207 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 245


>gi|297538855|ref|YP_003674624.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297258202|gb|ADI30047.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 14/150 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  + IR HS VP+I ++        +   + G DD V KP   RE++AR+ AI RR++
Sbjct: 61  IETLKAIRQHSNVPVIMLTAKGDNTDRIVGLELGADDYVPKPSSPRELVARIRAILRRVQ 120

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +N +   G + ++   R  E   +   L   E  +LE L  N G+ V+K  +  
Sbjct: 121 PLETINANTQITVGALCIWPAQRLVEWDSQPVILTSTEYSLLEILAKNAGQIVSKQDLSQ 180

Query: 176 AIYG----LFDEAVEENVVESHISKLRKKL 201
              G     FD +     ++ H+S +R KL
Sbjct: 181 QALGRPLARFDRS-----IDVHLSSIRHKL 205


>gi|282862289|ref|ZP_06271351.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282562628|gb|EFB68168.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 230

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR     +  
Sbjct: 69  IRKRSAIPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVARRGTTGEDTG 128

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    GP+R+    R   V+ +   L R+E  +L  L    G    + QI S ++ 
Sbjct: 129 ANPAAALLLGPVRIELPTRRVSVEDQEVQLTRKEFDLLALLAQRPGVVFRREQIISEVWR 188

Query: 180 LFDEAVEENVVESHISKLRKKLR 202
              E      +E H++ LR KLR
Sbjct: 189 TSWEGTGRT-LEVHVASLRSKLR 210


>gi|227486683|ref|ZP_03916999.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235395|gb|EEI85410.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
           51172]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 38/210 (18%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGK--GEKVLELPRI 66
           LVK+GY           E + + + EE L+    ED+   I   ++ K  GE V+   + 
Sbjct: 23  LVKEGY-----------EVYQAFDGEEGLRKFLAEDIDLVILDLMLPKMLGEDVM---KE 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NR 125
           IR  S+VP+I +S        +     G DD + KP   RE++ R+ A+ RR++  N  R
Sbjct: 69  IRNRSEVPVIMLSAKVEENDKVTGLRLGADDYITKPFSARELIERIKAVLRRIEKYNIPR 128

Query: 126 AETGPI------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           A+                R F DG       E++ L + E  IL+ L +N  K   + +I
Sbjct: 129 ADIIKTLDGRLEMDLEYNRFFKDGV------EIY-LTKNEFSILKTLFSNPNKIYTRDEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
               +G +D    +  +++HI  +R+K+ +
Sbjct: 182 IEITFG-YDYDAYDRAIDTHIKNIRQKIED 210


>gi|227509078|ref|ZP_03939127.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511985|ref|ZP_03942034.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524971|ref|ZP_03955020.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227084793|gb|EEI20105.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227087883|gb|EEI23195.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227191465|gb|EEI71532.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 229

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 10/173 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +E+ + +R  SQ+P+I +S        +    SG DD V KP +  E++ARV ++ 
Sbjct: 57  GMNGIEVIKEVRKDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLL 116

Query: 117 RRLK--VSNNRAET---GPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-A 169
           RR +  V+N+  +    GP+ +  D  +   + G    L   E  IL YL+A+   RV +
Sbjct: 117 RRTEEHVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGIL-YLLASHPNRVFS 175

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
             +IF  ++   +  V    V  H+S LR K+      + V    + +GY I+
Sbjct: 176 ADEIFERVWRQ-ESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227


>gi|225619869|ref|YP_002721126.1| OmpR [Brachyspira hyodysenteriae WA1]
 gi|225214688|gb|ACN83422.1| OmpR [Brachyspira hyodysenteriae WA1]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 5/167 (2%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           +G ++L++ R   AH  + +I ++   S    +   + G DD + KP    E+LAR+ A 
Sbjct: 61  EGTEILKIIRTDYAHLPIKVIMLTAKTSEINIVTGLNLGADDYMPKPFSVLELLARIKAN 120

Query: 116 YRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            R+  V  +  E   G I++    R+  V      L ++E  +L+ LM N    V +  +
Sbjct: 121 LRKKDVRLDAEELTFGDIKLVVKKRNVFVGERQVILTQKEFDLLKLLMENANNVVDRETM 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G+ D  +E   ++ HI  +R+KL   L  + + + R +GY +
Sbjct: 181 LEEVWGV-DHTMETRTIDMHIKSIRQKL--DLTKENIITVRGMGYKL 224


>gi|163854786|ref|YP_001629084.1| response regulator [Bordetella petrii DSM 12804]
 gi|163258514|emb|CAP40813.1| response regulator [Bordetella petrii]
          Length = 232

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           VP+I ++   + Q  ++  ++G DD + KP   +E++AR+ A+ RR   +++++  + G 
Sbjct: 77  VPVIMLTAKGAEQDKVEGLEAGADDYITKPFSPKELMARIKAVLRRRAPQLTDDIIDVGG 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENV 189
           +++           +   +   E R+L + M +  +  +++Q+   ++G  D   VEE  
Sbjct: 137 LKLDPVTHRLSGHEQALSIGPTEFRLLHFFMTHPERVFSRSQLLDQVWG--DHVFVEERT 194

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V+ HI +LRK L        V++ R  GY
Sbjct: 195 VDVHIRRLRKALEPSGHDAHVETVRGSGY 223


>gi|91778359|ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gi|296159926|ref|ZP_06842747.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
 gi|91691019|gb|ABE34217.1| Hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gi|295889909|gb|EFG69706.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
          Length = 223

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E+ R +RA   +P+I ++    +   +   + G DD + KP    E++ R+  + RR + 
Sbjct: 61  EIMRALRARRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGVT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++  E   +++    R    +G   PL  +E  +L  L+  +G+ +++TQI S ++ +
Sbjct: 121 RESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWDM 180

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            FD   + NVV+  I +LR K+ +      + + R +GY+
Sbjct: 181 NFDS--DTNVVDVAIKRLRAKVDHPFEKKLIHTVRSIGYT 218


>gi|163943307|ref|YP_001642537.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865504|gb|ABY46562.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 20/204 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VLI +RA    G+ AL  D G           E  L+   + +V  I   ++  G    
Sbjct: 17  IVLIMNRA----GFNALAADTG-----------ETALELLGKHNVDIILIDVMLPGIDGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR +++ + +I +S     +  +     G DD + KP    E+ ARV A+ RR+K
Sbjct: 62  QVCKSIRENNKNIGIIMLSARVQDRDKVQGLTIGADDYIEKPFSSIELTARVQALLRRVK 121

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +    E   + P R+         +G V  L   E  IL  LM N+GK +++ ++ + I
Sbjct: 122 GNKENMESIHSEPFRLNLQQERLYKEGVVIDLTPTEYIILRCLMENQGKPISRDELLNEI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G+ +  V+  V+  +I +LR+K+
Sbjct: 182 WGV-NYVVKTKVIGVNIRRLRQKI 204


>gi|332142499|ref|YP_004428237.1| Response regulator consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552521|gb|AEA99239.1| Response regulator consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 226

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 15/215 (6%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            L+ +G+  +   DG S  GFN        ++S+ E  + I   ++ + +    L ++  
Sbjct: 19  GLLGEGHECITVGDGAS--GFN--------EASSNELDAVILDVMLPELDGFSVLEKLRE 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
             +  P++ +S    ++  +    +G +D + KP    E+LARV  +  R K   ++   
Sbjct: 69  EGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNKDGEDKTLI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           + G + +    R      +   L  +E ++LE L+ ++GK V ++ +   ++   FD   
Sbjct: 129 KVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVWNYHFDP-- 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + NV++ HIS+LR+K+        +++ R  GY I
Sbjct: 187 QTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRI 221


>gi|65319271|ref|ZP_00392230.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 234

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 77  LRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 136

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 137 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 195

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 196 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 231


>gi|318040600|ref|ZP_07972556.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 253

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 12/158 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++      
Sbjct: 79  LRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKDSVAG 138

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + N+   + G +R+ ++ R      E   L   E  +LE L+   G+  ++ +I   ++G
Sbjct: 139 IPNSGVIQVGDLRIDTNKRQVYRGEERIRLTGMEFSLLELLVGRSGEPFSRGEILKEVWG 198

Query: 180 LFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
              E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 199 YTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 232


>gi|297180419|gb|ADI16635.1| response regulators consisting of a chey-like receiver domain and a
           winged-helix DNA-binding domain-protein [uncultured
           delta proteobacterium HF0010_01J10]
          Length = 253

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P+I ++   S    L  FD G DD V KP   +E+ ARV A+ RR          G + V
Sbjct: 102 PVIFVTARASEADKLAGFDLGADDYVTKPFSIKELEARVTAVLRRTGGGRAIYRFGDVEV 161

Query: 134 FSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
             D    R P+ +     L  RE+ +L YL+ + G  + + ++ +AI+  +   V    V
Sbjct: 162 DLDNYVIRHPDREER---LSNREQELLRYLVEHGGTVLPRGELLTAIW-RYSPNVTTRTV 217

Query: 191 ESHISKLRKKL 201
           ++HI  +RKKL
Sbjct: 218 DTHILNVRKKL 228


>gi|229055112|ref|ZP_04195541.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
 gi|228721234|gb|EEL72761.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN   +      F     D +   V   G+   L  +E  +L++  +N  +   KTQ
Sbjct: 123 VLGSNTNVQEKTTLTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           +F  ++   D  +E +N V  HI KLRKK+
Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKI 210


>gi|229199235|ref|ZP_04325913.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228584252|gb|EEK42392.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 223

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I +S   +    +   + G DD + KP +   ++A++ A+ RR   S  
Sbjct: 64  RKIREVSKVPIIFLSSRDNPMDMVMAMNMGGDDFMQKPFYTDVLVAKIQALMRR-TYSYT 122

Query: 125 RAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ET  +    V  + +  EV    ++  L + E +IL+ LM N G  V++  I   ++ 
Sbjct: 123 QTETNVVEYEGVVLNLQSGEVTYHNQILELTKNEFKILQILMQNIGSIVSRDNIMRKLWE 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  V++N +  +++++RKKL      + + +K+  GY I
Sbjct: 183 -NESFVDDNTLTVNVARVRKKLAELGKEEFIHTKKGQGYII 222


>gi|225570581|ref|ZP_03779606.1| hypothetical protein CLOHYLEM_06683 [Clostridium hylemonae DSM
           15053]
 gi|225160594|gb|EEG73213.1| hypothetical protein CLOHYLEM_06683 [Clostridium hylemonae DSM
           15053]
          Length = 226

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 19/220 (8%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65
           D  L ++GY       G +  G  +L     L S  + D+  ++  L G  GE++L  P 
Sbjct: 23  DELLTREGYFT-----GRAYSGTEAL----LLLSREKPDLILLDLMLPGLSGEEIL--PE 71

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +      +P+I +S   S+   +     G  D + KP   +E+LAR+A   R   V++  
Sbjct: 72  L----EGIPVIIMSAKTSVDDKVTLLLGGAADYITKPFDTKELLARIAVQLRSTAVTSAA 127

Query: 126 AET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  I V +      V G    + R E  IL+ LM N  +   K+ I   I     +
Sbjct: 128 HSLVFDDITVDTASHTVHVHGLPVRMTRTEYAILKLLMQNPSQVCTKSVILEHISEDTPD 187

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E + ++ H+S +RKKL++    D ++S   +G+ +  N
Sbjct: 188 CTESS-LKVHVSNMRKKLQDAGRKDYIESVWGIGFKMKEN 226


>gi|166030475|ref|ZP_02233304.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
 gi|166029727|gb|EDR48484.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
          Length = 234

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R IRA +  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRARANTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQA 124

Query: 121 --------VSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   V   +    P I +        V G+   +P +E  +L +L ++  +   + 
Sbjct: 125 VPKPEVPAVDKGKCVEYPGIEINLTNYSVLVDGQNVEMPPKELELLYFLASSPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           Q+   I+G ++   +   V+ HI +LR+K+++  G+
Sbjct: 185 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHNGW 219


>gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 248

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 6/144 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+      VP++ ++   +++  +     G DD V KP    E++AR+ A+ RR   +
Sbjct: 84  LRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGFA 143

Query: 123 -NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              R E     G + +  D  +    G++  L   E  +L YLM N  + ++K QI   +
Sbjct: 144 IAARHEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQILDRV 203

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +  +D   + NVVE +IS LRKK+
Sbjct: 204 WN-YDFGGQANVVELYISYLRKKI 226


>gi|154496215|ref|ZP_02034911.1| hypothetical protein BACCAP_00500 [Bacteroides capillosus ATCC
           29799]
 gi|150274298|gb|EDN01375.1| hypothetical protein BACCAP_00500 [Bacteroides capillosus ATCC
           29799]
          Length = 233

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 102/234 (43%), Gaps = 22/234 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +  DD+ +V    I L  +   + + ++ LE    L+   ++D+  +   ++  G   
Sbjct: 7   ILICDDDKDIVSALDIYLTSEGYKTFKAYDGLEA---LKVVDQQDIQLVLLDVMMPGLDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +     +R    +P+I ++        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 64  IRTTAKLRESKNIPIILLTAKSEDSDKILGLNIGADDYITKPFNPIEVIARVKSQLRRYT 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  +N    G I +    +   V GE   L   E  IL+ L+ + G+  + +QI
Sbjct: 124 TLGGREKTEDNVIRNGGIAMDDGAKSVTVDGESVSLTPIEYNILKLLLKSPGRVYSTSQI 183

Query: 174 FSAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
           +  ++   D ++  EN V  HI  LR+K+      DP + +       LGY ++
Sbjct: 184 YEQVWN--DPSLGSENTVAVHIRHLREKIE----IDPANPRYIKVVWGLGYKME 231


>gi|20806986|ref|NP_622157.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20515468|gb|AAM23761.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 20/190 (10%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGIS 79
           SLE E +   +A +    +E   IG  + V+    LP++        IR  S +P+I ++
Sbjct: 20  SLEEEGFEVDAAYDGEEGLEKVRIGNYDLVILDIMLPKMDGFSVCREIRTFSNIPIIMLT 79

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRV 133
                   +   + G DD + KP + RE++AR+ A+ RR   SN   +       G + +
Sbjct: 80  ARGDDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRR--ASNPYVKKKEEIRRGDLYI 137

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
               R    +G+   L  +E  IL  L +N GK   K ++   I+G+ D   + N V  H
Sbjct: 138 NIPERAVYKRGKKIELTNKEFEILVLLASNPGKVYTKDKLLDLIWGV-DFYGDANTVTVH 196

Query: 194 ISKLRKKLRN 203
           + KLR+KL +
Sbjct: 197 VRKLREKLED 206


>gi|163942544|ref|YP_001647428.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864741|gb|ABY45800.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 229

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 63/147 (42%), Gaps = 8/147 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +    + S  
Sbjct: 66  RRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQASKK 125

Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G ++ A ++  V SHI  LR KL  K
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEK 211


>gi|330721354|gb|EGG99427.1| Two component Transcriptional regulator2C Winged helix family
           [gamma proteobacterium IMCC2047]
          Length = 233

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 106/232 (45%), Gaps = 26/232 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++DD  ++++   A F   G+  +   + E      S+ + D+  ++  +   GE  +
Sbjct: 6   YLIVDDDEVIRESLAAYFEKYGIECDLAANAEEARHFLSNGQYDLLTVDVVM--PGESGI 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + I+A  + +P+I ++       T+   + G DD V+KP   R +LAR  A+ RR +
Sbjct: 64  ELTKWIKAEFAHMPVILLTALDDAIDTVAGLEVGADDYVSKPFDFRVLLARAKAVLRRYE 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI-------LEYLMANRGKRVAKTQI 173
                  +    VF      +V+G +  +   E R+       ++ L+A  G+ V++  +
Sbjct: 124 AEVPTGTSSVKGVF------DVKGRLLVIGEIEHRLNASEFAFVQALVAANGEPVSREVL 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
           FS I+       E N  +  I  +  +LR+K+   P     V + R  GY I
Sbjct: 178 FSQIF-----EREWNPGDRAIDNMVARLRHKIEPTPETPRYVVTVRHKGYMI 224


>gi|317489022|ref|ZP_07947549.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|316911889|gb|EFV33471.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 243

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R H   P++ ++ +      L+ F++G DD V KP     + ARV A   R    + 
Sbjct: 83  RRLREHLTCPILFLTAHVEDVDALEGFEAGADDYVLKPFSLAVLGARVKAHLARDNRQHV 142

Query: 125 RAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           RAE    G I +    R     G    L RRE  I+ +L  + G+   + +I   + G  
Sbjct: 143 RAEVRFDGDIAIDYRSRTVTAAGRPVELTRREFDIVAFLSKHPGQVFDRDRIHERVGGWE 202

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           +E+ +  VV  HI ++RKKL       DPV++   +GY
Sbjct: 203 NES-DSQVVTEHIRRIRKKLAAAGAEPDPVETVWGMGY 239


>gi|317123920|ref|YP_004098032.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588008|gb|ADU47305.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 249

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 22/177 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S   ++ ++        +     G DD + KP   RE++ARV A+ RR +
Sbjct: 72  VEVCRQIRTFSDCYVLMLTARGDEMDRIIGLSVGADDYITKPFSARELVARVQAVLRRPR 131

Query: 121 ---VSNNRAETG---PIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                ++R +     P R+F D      GR   V G    L R E  IL+ L A      
Sbjct: 132 QRGAGSSRDQAHREEPARLFGDLTIDPAGRSVSVAGSAVLLTRTEFDILDVLSARPKYAF 191

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
           ++ Q+   ++ +     +E++V+ H+  +R+    KLG DP     +D+ R +GY +
Sbjct: 192 SRRQLIDEVWDIA-WVGDEHIVDVHVGHIRR----KLGDDPTTPRYIDTVRGVGYRM 243


>gi|229169815|ref|ZP_04297512.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613665|gb|EEK70793.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  N       + +F D     V+  G+   L +RE  +L +L+ N+   +++  + + +
Sbjct: 122 IQQNETNFFQFKDLFVDASSHVVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 182 WG-YNVVVNPNVVDLYIGYVRKKLKCEKKGRYIQTIHGRGYSM 223


>gi|226312596|ref|YP_002772490.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095544|dbj|BAH43986.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDP 140
           +L+  ++  D+G DD + KP    E+LAR+ A+ RR    +  +  E   IR+    +  
Sbjct: 84  TLEERIEGLDAGADDYLVKPFESDELLARLRALSRRNFAPIQEDIIEVNGIRMNRSKQSI 143

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
              GE   L  +E  +L+ L+ N+G  + +  I   I+G  +  V  N V+ +I+ LRKK
Sbjct: 144 TRDGEEIQLTGKEFALLDLLVRNQGTVLTRDLILDRIWG-GEMEVASNSVDVYITLLRKK 202

Query: 201 LRNKLGFDPVDSKRFLGYSID 221
           +        + S R +GY I+
Sbjct: 203 IDAPSQKPLIRSIRGVGYVIE 223


>gi|212709975|ref|ZP_03318103.1| hypothetical protein PROVALCAL_01026 [Providencia alcalifaciens DSM
           30120]
 gi|212687384|gb|EEB46912.1| hypothetical protein PROVALCAL_01026 [Providencia alcalifaciens DSM
           30120]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 12/137 (8%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR        +  P  V
Sbjct: 79  PVLILTARDALEQRVNGLQQGADDYLCKPFALAEVAARLQALIRR-----RSGQLSPTLV 133

Query: 134 FSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
             D   DP       QG+   L  +E  +L   + N  K ++++ I   +Y  +DE V  
Sbjct: 134 HGDVEMDPLAMTVTYQGKPVQLKGKELALLSLFLHNPKKVLSRSAIEEKLYN-WDEEVSS 192

Query: 188 NVVESHISKLRKKLRNK 204
           N VE HI  LR+KL +K
Sbjct: 193 NSVEVHIHHLRRKLGSK 209


>gi|169628810|ref|YP_001702459.1| putative two-component system response regulator [Mycobacterium
           abscessus ATCC 19977]
 gi|169240777|emb|CAM61805.1| Putative two-component system response regulator [Mycobacterium
           abscessus]
          Length = 227

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 24/173 (13%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ R ++AH+ +P++ ++   +    L     G DD + KP   R ++ARVAA+ RR  
Sbjct: 64  LEVCRQVQAHAPIPVLMLTARGTETDMLVGLGVGADDYLPKPFSMRVLVARVAALLRRTH 123

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   +++   R +    RV+   RD EV      L R E  +L YL  N    +++
Sbjct: 124 RIAPPSTDVRIGQVRIDVSERRVYH--RDDEVH-----LTRTEFDLLAYLADNPRVAISR 176

Query: 171 TQIFSAIYGLFDEAVEEN--VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   ++G +   +      V+SHI    K LR KLG + + +   +GY+++
Sbjct: 177 DRLLDQVWG-WSAGLPSGRRTVDSHI----KALRRKLGQELIRTVHGIGYALE 224


>gi|218900386|ref|YP_002448797.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218542036|gb|ACK94430.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKL 204


>gi|297583440|ref|YP_003699220.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141897|gb|ADH98654.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN- 124
           I+R  S +P++ ++        +D   +G DD + KP    E+LAR+ AI RR     N 
Sbjct: 70  ILRKQSGLPVLMLTAKSEESDKVDGLRAGADDYLTKPFGRNELLARMEAILRRSDAYPNI 129

Query: 125 -RAETGP----------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +A+T            I + +  +   V      L ++E  +LE  + +  +  ++ Q+
Sbjct: 130 GQAQTSSSDDGQYSFDIITLNTRSKKVTVNKNPVSLTKKEFEMLELFIRHPEQVFSREQL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             AI+G+   +     V++H+  LR KLR+
Sbjct: 190 LEAIWGMDYLSASSRTVDTHVKTLRLKLRD 219


>gi|220928012|ref|YP_002504921.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998340|gb|ACL74941.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL   IR  S VP+I I+   + Q  ++ F +G DD + KP     +  R+ A+ RR  
Sbjct: 61  LELCNEIRKKSDVPIIFITANDTEQDIVNGFVNGCDDYIAKPFSLEVMNRRIQAVLRRTG 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +     +G I +  +            L   E ++L  L  N G+ + +  I   ++G
Sbjct: 121 TEDKSIFRSGEISINYEKMVVSKGKISLKLTATEYKLLTLLTQNSGQVLTRDIILQRLWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             +  V+EN V  ++ +LR+K+ +    DP + K
Sbjct: 181 TDEAFVDENAVSVNMRRLRQKIED----DPKNPK 210


>gi|118475242|ref|YP_891651.1| response regulator ompr [Campylobacter fetus subsp. fetus 82-40]
 gi|28974234|gb|AAO64235.1| putative two-component regulator Cf0034 [Campylobacter fetus]
 gi|118414468|gb|ABK82888.1| response regulator ompr [Campylobacter fetus subsp. fetus 82-40]
          Length = 222

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 73/143 (51%), Gaps = 7/143 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IR  S + +I  S   +L   +  F+ G DD + KP   +E++ R+ A+ RR+  
Sbjct: 62  EVCKMIRVFSTIAIIISSARGNLGDKVLAFEYGADDYLAKPYEPKELIIRINAVLRRIVK 121

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S   A+    G   +  +  + ++   +  L + E  IL  ++ ++GK V++ +I + I 
Sbjct: 122 SEEDAKKRFIGEFCIDEEKLEIQIDNHILELTKIEYEILLLMLNSKGKVVSRGEIAAHIK 181

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
                 +++  ++ HIS LR K+
Sbjct: 182 A----DLKDRSIDMHISNLRNKI 200


>gi|51597482|ref|YP_071673.1| DNA-binding response regulator CreB [Yersinia pseudotuberculosis IP
           32953]
 gi|108806370|ref|YP_650286.1| DNA-binding response regulator CreB [Yersinia pestis Antiqua]
 gi|108813255|ref|YP_649022.1| DNA-binding response regulator CreB [Yersinia pestis Nepal516]
 gi|145597926|ref|YP_001162002.1| DNA-binding response regulator CreB [Yersinia pestis Pestoides F]
 gi|165924975|ref|ZP_02220807.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937334|ref|ZP_02225898.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010264|ref|ZP_02231162.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212654|ref|ZP_02238689.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399825|ref|ZP_02305343.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419175|ref|ZP_02310928.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425262|ref|ZP_02317015.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467689|ref|ZP_02332393.1| DNA-binding response regulator CreB [Yersinia pestis FV-1]
 gi|170023127|ref|YP_001719632.1| DNA-binding response regulator CreB [Yersinia pseudotuberculosis
           YPIII]
 gi|186896602|ref|YP_001873714.1| DNA-binding response regulator CreB [Yersinia pseudotuberculosis
           PB1/+]
 gi|229837582|ref|ZP_04457744.1| putative response regulator [Yersinia pestis Pestoides A]
 gi|229840805|ref|ZP_04460964.1| putative response regulator [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842636|ref|ZP_04462791.1| putative response regulator [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229903711|ref|ZP_04518824.1| putative response regulator [Yersinia pestis Nepal516]
 gi|270487490|ref|ZP_06204564.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294502937|ref|YP_003566999.1| response regulator [Yersinia pestis Z176003]
 gi|51590764|emb|CAH22409.1| Putative response regulator CreB family [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776903|gb|ABG19422.1| response regulator [Yersinia pestis Nepal516]
 gi|108778283|gb|ABG12341.1| putative response regulator [Yersinia pestis Antiqua]
 gi|145209622|gb|ABP39029.1| response regulator [Yersinia pestis Pestoides F]
 gi|165914808|gb|EDR33421.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923175|gb|EDR40326.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990750|gb|EDR43051.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205946|gb|EDR50426.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963169|gb|EDR59190.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050533|gb|EDR61941.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055662|gb|EDR65446.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749661|gb|ACA67179.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186699628|gb|ACC90257.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229679481|gb|EEO75584.1| putative response regulator [Yersinia pestis Nepal516]
 gi|229690946|gb|EEO83000.1| putative response regulator [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229697171|gb|EEO87218.1| putative response regulator [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229704270|gb|EEO91281.1| putative response regulator [Yersinia pestis Pestoides A]
 gi|262360972|gb|ACY57693.1| response regulator [Yersinia pestis D106004]
 gi|262364912|gb|ACY61469.1| response regulator [Yersinia pestis D182038]
 gi|270335994|gb|EFA46771.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294353396|gb|ADE63737.1| response regulator [Yersinia pestis Z176003]
 gi|320014028|gb|ADV97599.1| putative response regulator [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 232

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 11/231 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +  L++D   + D  I     +G +L  F+  E      SS    ++ ++  L    G  
Sbjct: 4   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPALAIVDVGLPDINGFD 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +    R++ A   +P+I ++        +   + G DD + KP   RE+ ARV  I RRL
Sbjct: 64  LCR--RMLAAAPDLPVIFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTILRRL 121

Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + S+  A T     F        G       ++  L R E  +L+ L+    +  ++ Q+
Sbjct: 122 QKSHLLAVTSTSYQFGHFSLDEAGARVTYHQQILGLTRYEYLLLKTLLLAPERIFSRQQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
              ++   +E+ ++  V++HI  LR KLR     D P+ + R LGYS+ + 
Sbjct: 182 MDIVWAQAEES-QDRTVDTHIKTLRSKLRTVYAEDSPIRTHRGLGYSLGYQ 231


>gi|330980754|gb|EGH78857.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 258

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 80  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 139

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 140 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 197

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 198 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 236


>gi|330888178|gb|EGH20839.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 267

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 89  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 148

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 149 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 206

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 207 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 245


>gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 232

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ +++  E G + +  + R  +V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQHVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|225571268|ref|ZP_03780264.1| hypothetical protein CLOHYLEM_07365 [Clostridium hylemonae DSM
           15053]
 gi|225159744|gb|EEG72363.1| hypothetical protein CLOHYLEM_07365 [Clostridium hylemonae DSM
           15053]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 2/161 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I +   +  ++ +S   SL+  +D  DSG +D + KP   +E+ AR+ ++ RR   +
Sbjct: 63  LRQIRKEDEEFRVLILSARNSLEDKVDGLDSGSNDYLTKPFEFKELEARIRSLLRRNFTT 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            NR    G +++ +  +      +   L R+E  +LEYL  +  + +   ++    +   
Sbjct: 123 RNRVLSCGCLKLDTAAKRVYCGEKQVELTRKEYALLEYLFHHNDRMIRAEELIEHAWD-S 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +  +  N    HI  LRKKL        + S+R LGY + +
Sbjct: 182 ETDLFSNSFRFHIHSLRKKLDAAGAEGYIVSQRGLGYRLTY 222


>gi|218231365|ref|YP_002370039.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228903747|ref|ZP_04067865.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|218159322|gb|ACK59314.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228855893|gb|EEN00435.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 223

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKL 204


>gi|94970872|ref|YP_592920.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552922|gb|ABF42846.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 229

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 4/155 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--N 124
           IR  S++P+I ++     +  +   + G DD V KP   RE++AR+ AI RR+      +
Sbjct: 71  IREKSKIPVIMLTARGEERYRIKGLEVGADDYVAKPFSPRELIARIRAILRRVPDQGVPD 130

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               G + +  + R    +G    L   E  +L  L+   GK V++ ++     G  + A
Sbjct: 131 VFRVGDLHIDHNKRVVMQEGNPIELTSAEYEVLLVLVRAAGKTVSRDELAEKALG-REVA 189

Query: 185 VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
             +  ++ HIS LRKKL  K G  + + S R  GY
Sbjct: 190 FLDRSIDMHISNLRKKLGAKYGLAERIKSVRGAGY 224


>gi|86360102|ref|YP_471991.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86284204|gb|ABC93264.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 15/170 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  SQVP++ ++        +   + G DD V KP    E+ AR+ AI RR  
Sbjct: 61  IEVLQRIRKLSQVPVLMLTARGDDVDRISGLNLGADDYVPKPCSPGELAARLRAILRRAG 120

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S +    G + + S  R  E +GE   L   E  +LE L  + G+ V+K  I  
Sbjct: 121 QPAAGASTDTITAGQLVIHSGSRSAEWRGEALELTGTEFGLLEVLARSAGQLVSKQDISK 180

Query: 176 AIYGL----FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +G     FD       ++ HIS +R+KL   + G   + S R  GY +
Sbjct: 181 RAFGKPLTPFDRR-----IDVHISSVRQKLGLREDGQSWIQSVRGQGYQL 225


>gi|89073750|ref|ZP_01160264.1| putative transcriptional regulator [Photobacterium sp. SKA34]
 gi|90577762|ref|ZP_01233573.1| putative transcriptional regulator [Vibrio angustum S14]
 gi|89050525|gb|EAR56017.1| putative transcriptional regulator [Photobacterium sp. SKA34]
 gi|90440848|gb|EAS66028.1| putative transcriptional regulator [Vibrio angustum S14]
          Length = 219

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 8/152 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAET 128
            VP+I ++   S+   +   DSG  D + KP    E+LARV    R       + N  + 
Sbjct: 71  HVPVILLTAMVSINDKVVGLDSGAKDYLTKPFAEEELLARVRVHLRGDDEDTAAANIIKV 130

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G I +  + R+     E   L R E  +L +L  N G+   + ++   ++G ++      
Sbjct: 131 GDIIINQESREVIFDNENITLTRTEFELLVFLSKNAGRVFTRDELLDQVWG-YNHYPTTR 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V++HI +LR+KL    G D +++ R +GY +
Sbjct: 190 TVDTHILQLRQKLP---GID-IETLRGVGYRM 217


>gi|87121077|ref|ZP_01076968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Marinomonas sp. MED121]
 gi|86163569|gb|EAQ64843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Marinomonas sp. MED121]
          Length = 214

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 70/136 (51%), Gaps = 9/136 (6%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +++P+I ++        +   ++G DD + KP   RE++AR+ A+ RR   ++ +    P
Sbjct: 59  AEIPVIMLTAKSEEDNKIQGLEAGADDYITKPFSPRELVARLKAVLRR---AHPQGVDEP 115

Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           I V     DP  Q      +   +   E R+L++L+ ++ +  ++ Q+   ++G  +  V
Sbjct: 116 IEVDGLKLDPLSQRVSIGSKPLEMGPTEYRLLKFLITHQERAYSRAQLLDQVWG-GNVYV 174

Query: 186 EENVVESHISKLRKKL 201
           EE  V+ HI +LRK +
Sbjct: 175 EERTVDVHIRRLRKAI 190


>gi|87119340|ref|ZP_01075238.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Marinomonas sp. MED121]
 gi|86165731|gb|EAQ66998.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Marinomonas sp. MED121]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S +P+I ++        L   + G DD V KP   RE++ARV A  RR  
Sbjct: 61  MEICKQVRLFSNIPIIMLTAKAEEIDRLLGLEMGADDYVCKPYSPREVVARVKANLRR-- 118

Query: 121 VSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           VS ++ E      F    D      +GE+  L   E ++L+ L++  G+   +  I   I
Sbjct: 119 VSFDQVEEPKTEGFELDVDRLRVTYKGELIDLTTVEFQLLQLLISEPGRVFGREIIMKRI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           Y      V +  ++SHI KLRK++
Sbjct: 179 YT-DSRVVSDRTIDSHIKKLRKRI 201


>gi|91978347|ref|YP_571006.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91684803|gb|ABE41105.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 241

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 13/205 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D        +G  +    S+       +    D+  ++  +   GE   
Sbjct: 21  LLLVDDDRRIRDLLSRFLASEGYRVTTAQSVRDARAKLAGLNFDLLILDVMM--PGETGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L R IR  S VP++ ++     +  ++    G DD V KP   RE+L R+  I +R   
Sbjct: 79  DLARSIRVDSDVPIVMLTARHEAEARIEGLQLGADDYVAKPFEPRELLLRICNILKRTSP 138

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +AET   GP  +F   R    QG E+  L  RER +L  L A  G+ V + ++   
Sbjct: 139 APATKAETIAFGPY-LFHIERGELRQGEEIVHLTDRERDMLRVLAAAPGETVPRGELTGG 197

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
                     E  V+  I++LR+K+
Sbjct: 198 -----GGNANERAVDVQINRLRRKI 217


>gi|323132633|gb|ADX20063.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 9   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 68  FLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHNN 127

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L V N     G  + + DG++         L  +E  +L  LM   G  V +  +
Sbjct: 128 QGESELTVGNLTLNIGRHQAWRDGQE-------LTLTPKEYALLSRLMLKAGSPVHREIL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ IY  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 181 YNDIYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 222


>gi|322411732|gb|EFY02640.1| response regulator protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 221

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  S VP+I IS       T+     G DD ++KP     + A++AA  RR  + +++ 
Sbjct: 69  IRKQSMVPIIFISSSNDETDTIMALHMGGDDFISKPFSLTILDAKIAAFLRRSQQFTSDE 128

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
                 ++  DG     +  V  L   E +IL  L+    + V K +I   ++   D  +
Sbjct: 129 ISFAQFKLHFDGTLSNGKDSV-TLSPTEHKILTILITKNHEIVTKEEILERLWE-NDNFI 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + N +  ++++LRKK+   +GFD + + R +GY
Sbjct: 187 DHNTLNVNMTRLRKKIAT-IGFDHIHTIRGVGY 218


>gi|319745280|gb|EFV97598.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 16/121 (13%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR------DPEVQG 144
            D+G DD + KP   +E+LAR+ ++ RRL       E     V S GR      + E+Q 
Sbjct: 98  LDAGADDYLTKPFSLKELLARLRSMSRRL-------ENFTPNVLSLGRVTLSVGEQELQC 150

Query: 145 E-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL--FDEAVEENVVESHISKLRKKL 201
           E    L  +E ++L + M N  K ++  Q+F  ++G     E V+E  V  ++S LR+KL
Sbjct: 151 ENTIRLAGKEAKMLAFFMLNHDKELSTQQLFEHVWGADKDQEDVDEGYVFIYVSYLRQKL 210

Query: 202 R 202
           +
Sbjct: 211 Q 211


>gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL N1-067]
          Length = 236

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAET------GPIRVFSDGRDPEV 142
           G DD + KP   RE++AR+ AI RR +     +  N  E       G +++  +  +  +
Sbjct: 95  GADDYMTKPFSPREVVARIKAILRRTEGKAEVIEENTDEVEATILIGDLKILPESYEVYL 154

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             ++  L  +E  +L +L  +RGK  ++ Q+   ++  +D   E  +V+ H+S LR K+
Sbjct: 155 HDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 212


>gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 13/195 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           RAL ++GY  L  +DG +  G           +   EDV  I   L       LE+ R +
Sbjct: 19  RALRREGYEVLVREDGPAALG-----------AGLSEDVDLIVLDLGLPEMDGLEVCRRL 67

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           RA  +  P++ ++       T+   D+G DD V KP    E+LARV A+ RR  V     
Sbjct: 68  RADGKSFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGNVDQLTT 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               +++  +     +  E   L  +E  +L  L+ + G+ V + +I   ++        
Sbjct: 128 GAHGVKIDIESHRAWLGEEELTLSAKEFELLRVLVRDAGRVVTREEIMRQVWD-TTWWTS 186

Query: 187 ENVVESHISKLRKKL 201
              ++ HIS LRKKL
Sbjct: 187 TKTLDMHISWLRKKL 201


>gi|291540888|emb|CBL13999.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 101/230 (43%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + +L DD +L+ +G    F   G  L    +L+  E L +  + D+  ++  L  G G  
Sbjct: 4   ILLLEDDLSLI-NGLSFAFKKQGFELNIARTLKEAEKLWTDGKYDLLVLDVSLPDGSG-- 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
             E  + +R  S+VP+I ++      + +   D G DD + KP     +++R+ A+ RR 
Sbjct: 61  -FEFCKRVRLTSKVPIIFLTASDEETSIIMGLDIGGDDYITKPFKLGVLVSRINALLRRA 119

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++   ++  I+V          GE+  L   E ++L   M N    + K QI   
Sbjct: 120 NSFQAADTELQSNGIKVLLLQGQVFKNGELLDLTAAEYKLLCLFMRNPSMVLTKGQILDK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL---GYSIDWN 223
           ++      ++ + +  ++ +LR K+ +    +P + +  L   G    WN
Sbjct: 180 LWDCDGNYIDSSTLTVYMRRLRMKIED----NPSEPQMLLTVRGMGYKWN 225


>gi|291529349|emb|CBK94935.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 220

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 1/140 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R     P+I IS    +   +     G DD + KP    E+LARV  + RR + 
Sbjct: 62  ELLDYVRRIGDTPVIIISAMGQVDERIRGLRMGADDYICKPFQIGELLARVETVLRRTQR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R E   + +    R     GE   L  +E  +L  LM N+   +++ +++  ++   
Sbjct: 122 MAERLEIEDVAIDPKSRTVTKAGEQVELTVKEFDLLYELMKNKNVALSRRRLYELVWQ-E 180

Query: 182 DEAVEENVVESHISKLRKKL 201
           +   E   ++SH+ +LRKKL
Sbjct: 181 EYTGETRTLDSHVQRLRKKL 200


>gi|307730902|ref|YP_003908126.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585437|gb|ADN58835.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 280

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR   +  +V  L  RE  +LE L+   G+ V+K Q
Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+    G   + + R LGY ++
Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 219


>gi|229068774|ref|ZP_04202071.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229177635|ref|ZP_04305012.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228605825|gb|EEK63269.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228714391|gb|EEL66269.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 236

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 21/230 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 9   LLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVML--PGQSGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR   
Sbjct: 67  DICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 126

Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                E  P  + S GR        +  V G +     +  ++L +   N     +K +I
Sbjct: 127 QTVPHEQKPHSI-SFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +  ++G      ++N V  HI KLR+K+ +    DP     + + R LGY
Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEH----DPSKPEYIKTVRGLGY 231


>gi|168334022|ref|ZP_02692241.1| two component transcriptional regulator, winged helix family
           protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 227

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 16/186 (8%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRAHSQVPLIGIS 79
           SL  E W   SA +   AI A      + V           LE+ +I+R  S VP+I ++
Sbjct: 21  SLSQEGWDVDSAYDGAEAINAIKSENYDVVILDVMLPEYTGLEVCQIVREFSNVPIIMLT 80

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFS 135
                   +   + G DD + KP +  E+ AR+ A+ RR     +      E G +R+  
Sbjct: 81  AKGDDMDKIMGLEYGADDYITKPFNVLELKARIKAVLRRSIQEKETEKKTLEIGDLRLEC 140

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
           + +   +      L  +E  +LE    +RGK   + Q+  +I+G      +   V+ H+ 
Sbjct: 141 NSKRVFLNNNEINLTSKEFDMLELFATHRGKVYNREQLLDSIWGKGYPG-DVRTVDVHVR 199

Query: 196 KLRKKL 201
           +LR+K+
Sbjct: 200 RLREKV 205


>gi|206968610|ref|ZP_03229566.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206737530|gb|EDZ54677.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 234

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 21/230 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 7   LLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR   
Sbjct: 65  DICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                E  P  + S GR        +  V G +     +  ++L +   N     +K +I
Sbjct: 125 QTVPHEQKPHSI-SFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +  ++G      ++N V  HI KLR+K+ +    DP     + + R LGY
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEH----DPSKPEYIKTVRGLGY 229


>gi|241662615|ref|YP_002980975.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309781198|ref|ZP_07675935.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|240864642|gb|ACS62303.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308920019|gb|EFP65679.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFP 148
           +G DD V KP+   E++ARV A+ RR       S  R   GP  V   GR   + G    
Sbjct: 96  AGADDYVVKPVRRAELVARVGALLRRAAPRTGESLERIRVGPYAVDPVGRVLTLNGSQVE 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L  RE  +  YL  N GK V +  I  A++G      +   + +HISKLR KL
Sbjct: 156 LSPREFDLGLYLFRNVGKLVPRELIEQAVWG-RSIGPDSRTLATHISKLRLKL 207


>gi|77459576|ref|YP_349083.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383579|gb|ABA75092.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
          Length = 220

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 37/236 (15%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60
            +LI+D   + +G     G +G +++         WL+  +    SA+ A L    +   
Sbjct: 3   LLLIEDDVALGEGIHQALGREGYTVD---------WLKDGS----SALHALLSENFDLAV 49

Query: 61  --LELPR-----IIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
             L LPR     ++R    + S +P++ ++   + +  +   D+G DD + KP    E+ 
Sbjct: 50  LDLGLPRMDGLEVLRRLRGSGSNLPVLILTARDATEDRIAGLDAGADDYLIKPFDLAELK 109

Query: 110 ARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           AR+ A+ RR   S  RA    E   I +    +     G+   L  +E ++L  L++  G
Sbjct: 110 ARLRALLRR---SAGRAQMLIEHAGISLNPGTQQVSYLGQPVVLTPKEYQLLHELLSPPG 166

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + +  +   +YG ++E  E N +E HI  LRKK       D + + R +GY ++
Sbjct: 167 RVMTRDHLTQLLYG-WNEEAESNTLEVHIHHLRKKFST----DLIRTIRGVGYLVE 217


>gi|126463687|ref|YP_001044801.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105351|gb|ABN78029.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 7/155 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  SQVP+I +S        +   D+G  D V KP    E LAR+ A+ R   
Sbjct: 64  IEVLRTVRGWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRS 123

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +      + +    R   V G    L RRE  +L  L +  G+ V +  I   I+
Sbjct: 124 GPAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           G    A EE+    ++    ++LR KLG D  D +
Sbjct: 184 G---PAHEED--SQYLRVYIRQLRAKLGDDAADPR 213


>gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeovibrioides DSM 265]
          Length = 236

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 105/236 (44%), Gaps = 29/236 (12%)

Query: 1   MFVLIDDRALVK--------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           + V+ DDR L K         GY  LF ++G   + F+ L    +       D+  ++  
Sbjct: 6   LLVVEDDRNLAKLVGYNLEKAGYKCLFSENGE--DAFDQLSRRSF-------DLVLLDVM 56

Query: 53  LIGKGEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
           L   G    E+ R IR H     +P+I ++        +  F+ G+DD V KP   RE+ 
Sbjct: 57  L--PGIDGFEVCRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELT 114

Query: 110 ARVAAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
            R+ A+ +R +    V     + G + V        + G+   L   E ++L  L+  +G
Sbjct: 115 LRIRAVLKRDRRQGGVFREALKAGGLEVDIARHSVTLDGQELVLTLMEFKLLVALLKRKG 174

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++  + S ++ + D ++    +++HI++LR+KL        + + R LGY  D
Sbjct: 175 QAQSREMLLSDVWDV-DRSINTRTIDTHITRLREKLGE--SGRQIKTVRGLGYKFD 227


>gi|326802679|ref|YP_004320497.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650499|gb|AEA00682.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 10/188 (5%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           S   D++ I   ++  G+  L + + +R+    VP++ +S   +    +    +G DD V
Sbjct: 41  SENPDIALIILDIMMPGKDGLTVVKELRSREVDVPILLLSAKSADMDKISGLTTGADDYV 100

Query: 100 NKPIHHREILARVAAIYRRLKVSN----NRAETGPIRVFSDGRD-PEVQGEVFPLPRRER 154
            KP +  E++ARV ++ RR   S+    +  E GP+ +  +  +   + GE   L   E 
Sbjct: 101 TKPFNPLEVMARVKSLLRRSGASDQGSGDTIEIGPLIIHKNSHEVKTIDGEDIQLTALEF 160

Query: 155 RILEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            IL YL+A+    V +  +IF  ++   +  V    V  H+S LR K+    G D V S 
Sbjct: 161 GIL-YLLASHPNEVFSADEIFERVWQQ-ESVVSAKTVMVHVSHLRDKIETATGGDKVIST 218

Query: 214 RF-LGYSI 220
            + +GY I
Sbjct: 219 VWGVGYKI 226


>gi|315446747|ref|YP_004079626.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
 gi|315265050|gb|ADU01792.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
          Length = 250

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 14/153 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S   ++ ++   +   T+     G DD + KP   RE++AR+ A+ RR +
Sbjct: 76  LEVCRQLRTFSDAYIVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPR 135

Query: 121 VSNNRAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           V  +   T           GP+ +    R+  + GE   L R E  ILE L    G  ++
Sbjct: 136 VLQSATATAEIALAPPRRFGPLSINVAAREVSIDGEQILLTRTEFDILEALSGRPGNVLS 195

Query: 170 KTQIFSAIY-GLFDEAVEENVVESHISKLRKKL 201
           + Q+   +  G +     E++V+ HI  LR+KL
Sbjct: 196 RRQLLEIVRDGPW--VGNEHLVDVHIGHLRRKL 226


>gi|315028795|gb|EFT40727.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
          Length = 258

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 17/148 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  +++P++ ++      + +    SG DD + KP    E +ARV ++ RR    N+  
Sbjct: 95  IRETNRLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTNFNSLH 154

Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           E  PI   +        + R    +     LP +E  IL Y   N+GK + K QIF  ++
Sbjct: 155 E--PIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFEKVW 212

Query: 179 G---LFDEAVEENVVESHISKLRKKLRN 203
               ++D    +N + + ISKLRKK+ +
Sbjct: 213 QEPYVYD----DNNIMAIISKLRKKIED 236


>gi|257486804|ref|ZP_05640845.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330988679|gb|EGH86782.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010275|gb|EGH90331.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 229

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 100/225 (44%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +  ++   NS E  E    S R D+  ++  +       +
Sbjct: 4   VLLVDDDRELTEMLSQYLTRESFTVTCTNSAEEGENEALSGRHDIVVLDIMM--PRMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IRA SQVP+I ++        +   + G DD V KP    E++AR+ AI RR++ 
Sbjct: 62  EVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRA 121

Query: 121 ---VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              V   R   + G + ++   R+   QG    L   E  +LE L  + G+ V+K  +  
Sbjct: 122 VPVVETVREVIQAGDLTLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSM 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGY 218
              G    A  +  ++ HIS +R KL  RN      + S R LGY
Sbjct: 182 NALG-RPLARYDRSIDVHISSIRHKLGPRND-NQSWIQSVRNLGY 224


>gi|257440578|ref|ZP_05616333.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Faecalibacterium prausnitzii A2-165]
 gi|257196901|gb|EEU95185.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Faecalibacterium prausnitzii A2-165]
          Length = 224

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 3/129 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F  G DD + KP    E+L R+ A+ RR + V  ++   G + V  D R      EV  L
Sbjct: 92  FLVGTDDYMTKPPDKTELLLRIKALLRRARIVDEHKITVGDVVVDMDSRTVRRGMEVQTL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P +E  +L  L+A   +   + ++   I+G+ D   ++  V  HI++LR +  +   F+ 
Sbjct: 152 PPKEFELLYKLLAYPERTFTRMELLDEIWGI-DSESDDKTVNVHINRLRNRFYDWPEFE- 209

Query: 210 VDSKRFLGY 218
           + + R LGY
Sbjct: 210 IQTVRGLGY 218


>gi|228942401|ref|ZP_04104939.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975334|ref|ZP_04135890.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981970|ref|ZP_04142264.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228777731|gb|EEM26004.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228784316|gb|EEM32339.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817242|gb|EEM63329.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 219

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 56  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 115

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 116 KTENAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 175

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 176 KVWG-FEYIGNTRAVDIMVQRLRKKL 200


>gi|167632875|ref|ZP_02391201.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170686480|ref|ZP_02877701.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|227815224|ref|YP_002815233.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|167531687|gb|EDR94352.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170669556|gb|EDT20298.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|227004679|gb|ACP14422.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 68  LRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 128 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 187 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 222


>gi|254255648|ref|ZP_04948964.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901385|gb|EAY72135.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 286

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R  RA ++  P+I  S   S    +   + G DD + KP    E++AR
Sbjct: 103 LMLPGVDGLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVAR 162

Query: 112 VAAIYRRLK--VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164
           V A+ RR+     ++R + G + V     DP      V G    L  RE  +L +   + 
Sbjct: 163 VKALLRRVDALARDSRIDAGTLDVAGLSIDPIAREASVDGMRIDLTPREFDLLYFFARHP 222

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           GK  ++  + +A++G   E   E+ V +HI++LR K+      DP +  R L
Sbjct: 223 GKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLRAKIET----DPAEPARIL 269


>gi|187928034|ref|YP_001898521.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|187724924|gb|ACD26089.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYR----RLKVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
           +G DD V KP+   E++ARV A+ R    R   S  R   GP  V   GR   + G    
Sbjct: 96  AGADDYVVKPVRRAELVARVGALLRRAAPRTSESLERIRVGPYAVDPVGRVLTLNGSQVE 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L  RE  +  YL  N GK V +  I  A++G      +   + +HISKLR KL
Sbjct: 156 LSPREFDLGLYLFRNVGKLVPRELIEQAVWG-RSIGPDSRTLATHISKLRLKL 207


>gi|126437133|ref|YP_001072824.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126236933|gb|ABO00334.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 248

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S   ++ ++   +   T+     G DD + KP   RE++AR+ A+ RR +
Sbjct: 74  LEVCRQLRTFSDAYVVMLTARDTELDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPR 133

Query: 121 VSNNRA-----ETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +    A     ET P R F         R+  +  E+  L R E  ILE L A  G  ++
Sbjct: 134 ILQTAAAPAERETAPPRRFGALSIDVAAREVHIDDELILLTRTEFDILEALSARPGIVLS 193

Query: 170 KTQIFSAIYGLFDE--AVEENVVESHISKLRKKL 201
           + Q+   I    DE     E++V+ HI  LR+KL
Sbjct: 194 RRQLLEIIR---DEPWVGNEHLVDVHIGHLRRKL 224


>gi|28210332|ref|NP_781276.1| two-component response regulator [Clostridium tetani E88]
 gi|28202769|gb|AAO35213.1| two-component response regulator [Clostridium tetani E88]
          Length = 234

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 21/202 (10%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           K GY  L+   G   EG+   +         RE+ S +   ++      L L + IR  S
Sbjct: 24  KTGYEVLWASTGK--EGYEEFK---------RENFSLLMIDIMMPEMDGLTLCKNIRLTS 72

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNN--- 124
            VP++ IS        +   + G DD + KP    E+ AR+ +  RR +    + NN   
Sbjct: 73  DVPILIISAKNEDGYKVKGLNIGADDYITKPFSLVELQARLESHLRRYRRYNGIENNEHI 132

Query: 125 -RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            + + G I ++ +G+  EV G    L  +E  +L  +  N  K   K++++  ++G  D 
Sbjct: 133 LKFKRGLI-IYQEGKYVEVDGRNIHLTSKEFELLMLMAENPKKTFTKSELYEILWGEKD- 190

Query: 184 AVEENVVESHISKLRKKLRNKL 205
               N V  HI +LR+KL+  +
Sbjct: 191 VHGNNTVTVHIKELREKLKENI 212


>gi|87123720|ref|ZP_01079570.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86168289|gb|EAQ69546.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 242

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 9/148 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           RI  +    P++ ++ +  +   +   D+GVDD + KP    E++AR+ A+ RR +  + 
Sbjct: 74  RIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLTKPFSIEELMARLRAMQRRAEFFSK 133

Query: 125 RA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E G +R+ +  RD         L  +E  +L +LM  RG+ + + +I   
Sbjct: 134 EGRSGQPLLLEVGDLRLHTGTRDVRRGDREIQLSVKEYDLLHFLMRGRGRVLERAEIMRG 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           ++G  +   ++N+++ +I  LR+K+  +
Sbjct: 194 VWG-ENFYGDDNLLDVYIRYLRQKIETE 220


>gi|150018666|ref|YP_001310920.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905131|gb|ABR35964.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 223

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 22/168 (13%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S+VP+I ++   S    L   + G DD + KP +   +LAR+    +R    
Sbjct: 63  ICREIRKTSEVPIIIVTSRDSEVDELMSMNLGADDFITKPYNTEILLARITNSLKRTYGN 122

Query: 119 LKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +K SN       N   +    ++ D            L + E +IL +L+ N+G  V + 
Sbjct: 123 IKNSNILSYRDFNLNLSNATIIYKDNS--------LELTKNEVKILSFLINNKGNIVKRD 174

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            +   ++   D  V+++ +  +I++LRKKL  ++G  +P++++R +GY
Sbjct: 175 SLMEYLWKA-DFFVDDSTLNVNINRLRKKLE-EIGIENPIETRRGMGY 220


>gi|116625339|ref|YP_827495.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228501|gb|ABJ87210.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 10/156 (6%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           + +P+I ++   S    +   + G +D V KP   RE++AR+   +R         E G 
Sbjct: 79  AAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFRNQATPARLLEAGG 138

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +        + G    L   E R+LE+LM   G   ++ Q+ +A++G  D A+ +  V
Sbjct: 139 VELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLLNAVWGQ-DRAITDRAV 197

Query: 191 ESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221
           + ++ +LR+K+      DP     + S R  GY+ +
Sbjct: 198 DVYVLRLRQKVEK----DPASPILIHSVRGFGYTFE 229


>gi|328466857|gb|EGF37967.1| putative response regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 98/213 (46%), Gaps = 16/213 (7%)

Query: 23  GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79
            ++ EGF+   + + EE ++   + D   +   L+   +  LE+ R +R    +P+I ++
Sbjct: 21  NLTKEGFDVDTAYDGEEAVKKVDKYDPDLMILDLMLPKKDGLEVAREVRQTHDMPIIMVT 80

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-----------SNNRAET 128
              +    +   + G DD V KP  +RE++ARV A  RR  +           ++   + 
Sbjct: 81  AKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDIVKKAEAANQDDTDKNIKI 140

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +  D    E  G    L  RE  +L YL  + G+ + +  +   ++G +D   +  
Sbjct: 141 GNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTREHLLQTVWG-YDYFGDVR 199

Query: 189 VVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            V+  + +LR+K+  N +    + ++R +GY +
Sbjct: 200 TVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYV 232


>gi|308067409|ref|YP_003869014.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305856688|gb|ADM68476.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 226

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 7/145 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R+ S VP+I ++        +  F+ G DD V KP   + ++AR  A+ +R++ 
Sbjct: 63  EVCRQVRSRSGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVE- 121

Query: 122 SNNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + + E+  +R  S          EV      L  +E  +L  L+ N+G  +++  I + 
Sbjct: 122 GHVQPESHILRFGSAILNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVISRDTILNR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G+  E  +  VV++HI KLR KL
Sbjct: 182 VWGIDFEG-DTRVVDTHIKKLRSKL 205


>gi|299069218|emb|CBJ40478.1| Transcriptional regulator of hrp gene cluster, OmpR family
           [Ralstonia solanacearum CMR15]
          Length = 247

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146
           F++GVDD++       E+ ARV  + RR +     A      GP R+    R   V    
Sbjct: 92  FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNAGMHVVVGPYRLCRLTRTATVNEAP 151

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             L  RE      L ++ G  +++ QI SA++G  D ++ E  +E HI KLRKKL
Sbjct: 152 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 205


>gi|298249642|ref|ZP_06973446.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547646|gb|EFH81513.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 238

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ + +R  S VP+I ++   S +  +   D G DD + KP    E+LARV A  RR  
Sbjct: 65  LEVCQRVRQSSTVPIIILTALDSERDKVATLDLGADDYLTKPFGVEELLARVRAALRRTN 124

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 L   +N    G + V   G    ++GE   L   E  +L+ L+ N GK +    
Sbjct: 125 WEETGSLPAVSNAKHFGELEVDLAGHVVRLRGEEIRLSPTEFALLKQLVTNAGKVLTHRM 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  +I+G  +   E   +  +I++LR KL
Sbjct: 185 LLQSIWG-PEYGDEAEYLRVYINRLRHKL 212


>gi|229115474|ref|ZP_04244880.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228667887|gb|EEL23323.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 71  LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   I+G +D   
Sbjct: 131 IQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEEIWG-YDFEG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 190 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 225


>gi|229189308|ref|ZP_04316329.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594208|gb|EEK52006.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 234

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 21/230 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 7   LLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNHYDLIILDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR   
Sbjct: 65  DICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                E  P  + S GR        +  V G +     +  ++L +   N     +K +I
Sbjct: 125 QTVPHEQKPHSI-SFGRFEINQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +  ++G      ++N V  HI KLR+K+ +    DP     + + R LGY
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEH----DPSKPEYIKTVRGLGY 229


>gi|297198420|ref|ZP_06915817.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147085|gb|EDY60144.2| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 246

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 94/209 (44%), Gaps = 21/209 (10%)

Query: 30  NSLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIG 77
            +L +E W   +A +  SA+ A             ++   +    L  +    + V ++ 
Sbjct: 36  GALRYEGWQIRTAGDGASAVAAARELLPDAVVLDVMLPDTDGFAVLRALHSVKADVCVLF 95

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-----RAETGPIR 132
           ++   +++  +    +G DD V KP    E++AR+  + RR  ++       R   G + 
Sbjct: 96  LTARDTVEDRIKGITAGGDDYVTKPFSLEEVVARLRGLLRRAGLARQLDEGPRLTVGDLV 155

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  D R+    GE+  L   E  +L +LM N  + ++K QI   ++  +D     +VVE 
Sbjct: 156 MDEDAREVTRGGELIELSPTEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGRAHVVEL 214

Query: 193 HISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +IS LRKK+    G +P + + R  GY I
Sbjct: 215 YISYLRKKV--DAGREPLIHTVRGAGYVI 241


>gi|255657277|ref|ZP_05402686.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296451868|ref|ZP_06893586.1| response regulator [Clostridium difficile NAP08]
 gi|296879736|ref|ZP_06903711.1| response regulator [Clostridium difficile NAP07]
 gi|296259285|gb|EFH06162.1| response regulator [Clostridium difficile NAP08]
 gi|296429325|gb|EFH15197.1| response regulator [Clostridium difficile NAP07]
          Length = 219

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            E+ + IR     P++ ++        +     G DD + KP    E+ AR+ A  RR  
Sbjct: 60  FEVCKAIRNKVDCPILFLTAKNMESDIMYGLGIGADDYITKPFGVGELRARITAHLRRES 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N      ++    G++  + G+     + E  I E+L  N+G+  +K +I+ ++YG
Sbjct: 120 REKKNLLTISNVQFNFLGKEVLIDGKKINFTKSEYLICEFLAKNKGQVFSKERIYESVYG 179

Query: 180 LFDEAVEENVVESHISKLRKKLR 202
            FD   + + +  H+  +R KL+
Sbjct: 180 -FDGESDISTITEHVKNIRSKLK 201


>gi|225548096|ref|ZP_03769381.1| hypothetical protein RUMHYD_00075 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040772|gb|EEG51018.1| hypothetical protein RUMHYD_00075 [Blautia hydrogenotrophica DSM
           10507]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 3/151 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGP 130
            P+I ++   SLQ  +   D G DD + KP    E++AR+  + RR +    ++    G 
Sbjct: 73  TPVIFLTALSSLQDKITGLDCGADDYMVKPFAFEELMARIRCLSRRPQKWEGSSVISLGD 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I    D +      +   L ++E  ++E  + N G+ + +  + S ++G  D  VE+  +
Sbjct: 133 ISFDPDQKKLFCHTKECSLSKKEGALMEIFLRNPGQILPRQTLLSRVWGP-DSEVEDGNL 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +++I  LR++LR+      + + R +GY ++
Sbjct: 192 DNYIYFLRRRLRSVDSRLELKAVRGVGYQLE 222


>gi|225027575|ref|ZP_03716767.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
 gi|224955091|gb|EEG36300.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
          Length = 229

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 16/215 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V+ D+R +VK    +L  DD   +E   + + EE L+ + + +   +   ++      
Sbjct: 5   VLVVDDERLIVKGIKFSLVQDD---MEVDCAYDGEEALEMAKKTEYDIVLLDVMLPKMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S +P+I ++        +   + G DD + KP +  E+ AR+ AI RR  
Sbjct: 62  FEVCQRIREFSNMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR-- 119

Query: 121 VSNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            S+ RA         E   +++  D R   V+ +   L  +E  +LE L  +  K  ++ 
Sbjct: 120 -SSKRATEDEKKKIFEKNGLKIDCDSRRVFVEDKEVKLTAKEYDLLELLSFHPNKVYSRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            + + ++G +D   +   V+ HI +LR+K+    G
Sbjct: 179 NLLNIVWG-YDYPGDVRTVDVHIRRLREKIEKNPG 212


>gi|222082916|ref|YP_002542281.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727595|gb|ACM30684.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 240

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 11/171 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE    + R +R+   +P++ ++        +   + G DD V KP + RE++AR+ +I 
Sbjct: 62  GEDGFSICRRLRSSRSIPILMLTALREDVDRILGLELGADDYVTKPFNSRELMARIKSIL 121

Query: 117 RRLKVSNNRAETGPIRVFSDGR-DP------EVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR   S    E      F+  R DP      + +G    +   E  +L    +N  K + 
Sbjct: 122 RRASFSQQPEEDVAPMTFAGWRIDPKSRQLFDAEGAEVSMTTAEFDLLWAFCSNPNKVLT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
           + Q+ S  +      VE + +++HIS++R+K+   L  DP  + + R  GY
Sbjct: 182 REQLLSMTHAGSAGPVERS-IDAHISRVRQKIEPNLK-DPTFIKTVRLGGY 230


>gi|160939834|ref|ZP_02087181.1| hypothetical protein CLOBOL_04725 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437268|gb|EDP15033.1| hypothetical protein CLOBOL_04725 [Clostridium bolteae ATCC
           BAA-613]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           ++++ DD  ++    IAL G  G + EGF + E         + D+   +  L G  G +
Sbjct: 4   IYIIEDDENIMNLLKIALEGF-GYAAEGFETAEEGLARMREEKPDLVIFDWMLPGMDGTE 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            ++  R       VP++ ++        +   D G DD + KP    E+ AR+ ++ RR 
Sbjct: 63  AIKEVRNTEQLKYVPIMLLTAKEKELDKVVGLDCGADDYMVKPFGVLELSARIRSLLRRT 122

Query: 120 KVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           K   +R       I+V    R+    G +  L  +E  +L YL+ N+ + V + ++ + I
Sbjct: 123 KREEDRDVLFYQDIQVNRKTREVSSGGRLVELTLKEFELLVYLLENQSRVVTRDELLNRI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++   E   ++ HI  LR+KL  + G   + + R +GY +
Sbjct: 183 WG-YEYDGETRTLDMHIRTLRQKLGEE-GGACIKTVRGVGYRM 223


>gi|22537475|ref|NP_688326.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|22534353|gb|AAN00199.1|AE014252_22 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 6/116 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGE-VFP 148
            D+G DD + KP   +E+LAR+ ++ RRL+  + N    G  RV     + E+Q E    
Sbjct: 91  LDAGADDYLTKPFSLKELLARLRSMSRRLEDFTPNVLSLG--RVTLSVGEQELQCENTIR 148

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL--FDEAVEENVVESHISKLRKKLR 202
           L  +E ++L + M N  K ++  Q+F  ++G     E V+E  V  ++S LR+KL+
Sbjct: 149 LAGKEAKMLAFFMLNHDKELSTQQLFEHVWGADKDQEDVDEGYVFIYVSYLRQKLQ 204


>gi|16767542|ref|NP_463157.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|161617435|ref|YP_001591400.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167991502|ref|ZP_02572601.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231307|ref|ZP_02656365.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237001|ref|ZP_02662059.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168243710|ref|ZP_02668642.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168263368|ref|ZP_02685341.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466994|ref|ZP_02700842.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168821248|ref|ZP_02833248.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194446648|ref|YP_002043542.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451690|ref|YP_002048283.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194469502|ref|ZP_03075486.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734993|ref|YP_002117227.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250754|ref|YP_002149207.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262661|ref|ZP_03162735.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|198245395|ref|YP_002218184.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387181|ref|ZP_03213793.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205355063|ref|YP_002228864.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859446|ref|YP_002246097.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224586057|ref|YP_002639856.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238912749|ref|ZP_04656586.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16422853|gb|AAL23116.1| response regulator in two-component regulatory system with BasS
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56540683|gb|AAV92795.1| PmrA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|161366799|gb|ABX70567.1| hypothetical protein SPAB_05292 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405311|gb|ACF65533.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194409994|gb|ACF70213.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194455866|gb|EDX44705.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710495|gb|ACF89716.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195630642|gb|EDX49254.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197214457|gb|ACH51854.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197240916|gb|EDY23536.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290033|gb|EDY29392.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197939911|gb|ACH77244.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199604279|gb|EDZ02824.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205274844|emb|CAR39904.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205330124|gb|EDZ16888.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334263|gb|EDZ21027.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205337324|gb|EDZ24088.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205342091|gb|EDZ28855.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205347889|gb|EDZ34520.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711249|emb|CAR35625.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470585|gb|ACN48415.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261249390|emb|CBG27254.1| Two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996618|gb|ACY91503.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160784|emb|CBW20315.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915397|dbj|BAJ39371.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088702|emb|CBY98460.1| Phosphate regulon transcriptional regulatory protein phoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223164|gb|EFX48234.1| Transcriptional regulatory protein basR/pmrA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|326625984|gb|EGE32329.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326630216|gb|EGE36559.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332991107|gb|AEF10090.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 222

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L RI +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHNN 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L V N     G  + + DG++         L  +E  +L  LM   G  V +  +
Sbjct: 122 QGESELTVGNLTLNIGRHQAWRDGQE-------LTLTPKEYALLSRLMLKAGSPVHREIL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ IY  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 175 YNDIYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|15613716|ref|NP_242019.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173769|dbj|BAB04872.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 232

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 17/230 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++G      ++G+++  F + +  E L+    ED+  +   ++      ++
Sbjct: 8   LVVDDDKEIREGITIYLKNEGMNV--FQAKDGIEALERLNEEDIHLMLLDVMMPRLDGIQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR    +P+I +S        +     G DD V KP +  E++ARV +  RR    
Sbjct: 66  TTLKIREARNIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRRYVNL 125

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +          I +  D ++ +  GE   L   E RI+E LM N G+  +  +I+  
Sbjct: 126 GTYEQKKQLINLNGITLDLDAKEVKAYGEPVKLTPIEYRIIELLMTNAGRVFSIAEIYER 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
           ++        EN V  HI K+R+K+      DP + +       +GY ++
Sbjct: 186 VWNEPSFQSSENTVAVHIRKIREKIE----IDPSNPRHLKVVWGIGYKME 231


>gi|330836318|ref|YP_004410959.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
 gi|329748221|gb|AEC01577.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
          Length = 242

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 12/148 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S  P+I ++   +    +  F+ G DD + KP   +E++ R+ A++RR+  +++
Sbjct: 65  RDIRMSSDCPVIFMTARITESDRIFGFELGADDYITKPFSPKEMVLRIEAVFRRVDAASS 124

Query: 125 RAET----------GPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +          G +   +D      + G +  L   E ++L YL  N G  V++  I
Sbjct: 125 PVVSSVDVSVWMLDGSVMKMNDTAHQLLIDGSIISLTVAEWKVLGYLARNAGSVVSRDMI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
               +G   ++    VV++H+  LR KL
Sbjct: 185 IQKCFGYSTDSY-RRVVDTHVKNLRTKL 211


>gi|312886562|ref|ZP_07746170.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300965|gb|EFQ78026.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 77/150 (51%), Gaps = 7/150 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           ++L + IR   + +P++ ++   S +  +   +SG DD + KP    E+  R+  + RR 
Sbjct: 60  IQLCKHIRERDENIPILMLTALDSTENIVTGLNSGADDYMVKPFKMIELATRLKTLLRRA 119

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               ++   N      + + +D +   V+     L   E R+LE+ + N+ K +++ Q+ 
Sbjct: 120 GGNSIQQPKNIYRIADLELDADAKIASVKQVPLNLTATEYRLLEHFIKNQRKVLSRIQLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204
            +++ + D  +  NVV+ +I+ LRKKL +K
Sbjct: 180 ESVWDI-DFNLGTNVVDVYINYLRKKLDSK 208


>gi|298243644|ref|ZP_06967451.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556698|gb|EFH90562.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 232

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFP 148
           G DD + KP   R++LAR+ A+ RR          +    GPI + +   +    G    
Sbjct: 93  GADDYLRKPFSPRQLLARIKAVMRRAGNVRGVAGTSTVTVGPITLDAMRHEVTRDGVKVR 152

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L   E R+L  L+ N G+ +    I   ++G +DE  +  +V++HI  LR+K+
Sbjct: 153 LTPTESRLLHLLITNTGQVLTTDMIIERVWG-YDETGDSGLVKTHIRHLRQKV 204


>gi|257866229|ref|ZP_05645882.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873257|ref|ZP_05652910.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257875864|ref|ZP_05655517.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325567671|ref|ZP_08144338.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|257800187|gb|EEV29215.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257807421|gb|EEV36243.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257810030|gb|EEV38850.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325159104|gb|EGC71250.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 241

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR K
Sbjct: 73  MQVVKELRKESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 132

Query: 121 V--SNNRAETGPIRVFSDGRDPE----VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
           +  ++N+ E   +      RD      V G    L   E  IL YL+A+   RV +  +I
Sbjct: 133 MQAASNQPEILEVSSLIINRDSHEVKTVDGNEIQLTALEFGIL-YLLASHPNRVFSADEI 191

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 192 FERVWKQ-ESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKID 239


>gi|326204574|ref|ZP_08194431.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985367|gb|EGD46206.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 9/214 (4%)

Query: 2   FVLIDDRALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D  L+ DG  IAL     + L GF+   + E L          I   +       
Sbjct: 4   ILIVEDDKLINDGISIALKKGGHMVLSGFS---YNEALCLFLNNSFELILLDINLPDRSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL   IR  S +P+I I+   + Q  ++ F  G DD + KP     +  R+ A+ RR  
Sbjct: 61  LELCNEIRKKSDIPIIFITANDTEQDIVNGFVIGCDDYIAKPFSLEVMNRRIHAVLRRTT 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N   +G I +  D      +  +  L   E ++L  L  N G+ + +  I   ++ 
Sbjct: 121 PEDKNTFRSGEISINYDKMVVSKREVLIKLTATEYKLLALLTQNSGQVLTRDIILQRLWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             +  V+EN V  ++ +LR+K+ +    DP + K
Sbjct: 181 TDEAFVDENAVSVNMRRLRQKIED----DPKNPK 210


>gi|242372585|ref|ZP_04818159.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349802|gb|EES41403.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 280

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 18/175 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +E+ R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  
Sbjct: 105 GRDGMEVCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 164

Query: 117 RR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           RR        +  + N      I ++ D    + +GE   L  RE  +  YL  + G+ +
Sbjct: 165 RRHYSQPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVM 224

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            +  +   ++G +D   +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 225 TREHLLQTVWG-YDYFGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 274


>gi|229030286|ref|ZP_04186340.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228731039|gb|EEL81967.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 235

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 80/167 (47%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD + KP H+  ++A++ +  RR      
Sbjct: 65  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFIPKPFHYEVVMAKIRSHLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   + ++ +     ++ +   + R E  +LE LM N  + V +  + + ++
Sbjct: 125 PKVEERMVEQQGLCLYPERLVLRLKNQEIDITRNEAILLEMLMKNYPRVVGREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     D +++ R +GY   I W+
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIEDAIETIRSVGYRLHITWD 230


>gi|229077964|ref|ZP_04210573.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228705302|gb|EEL57679.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 225

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNE 121

Query: 122 SNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  G   V+ + +    V  E   L   E  +L   + +    + + Q+   I+GL
Sbjct: 122 HKQIQYHGI--VWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
            +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 180 -NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220


>gi|255658861|ref|ZP_05404270.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
 gi|260849265|gb|EEX69272.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
          Length = 230

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 31/175 (17%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-------- 114
           + R +R    +P+I +S   +    +  F  G DD + KP    E++ARV A        
Sbjct: 63  VCRRLREELDIPVIIVSARQTDIDKIRGFGLGADDYMTKPFSPSELVARVKAHIARYEQL 122

Query: 115 ------IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                    RL       E    RVF DG       E   L  RE  +L +LM NRG   
Sbjct: 123 TRKEQQCVARLSCGKLALEAKSHRVFKDG-------EEIHLTNREFELLRFLMENRGLVF 175

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           ++  +F  I+GL D   +   V  HI+++R+K+      DP     +++ R  GY
Sbjct: 176 SRETLFERIWGL-DAMGDNATVAVHINRIREKIET----DPAHPAYIETVRGAGY 225


>gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 233

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 14/203 (6%)

Query: 27  EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGISD 80
           EG+++L     EE L  + RE    +   L+  G    E+ R IR ++   ++P++ ++ 
Sbjct: 26  EGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDGFEVTRRIRGNAVTVEIPIVMLTA 85

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAETGPIRVFS 135
                  +   + G +D ++KP   RE++AR+  I RR        +      GP+ +  
Sbjct: 86  KGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRRRTRVEKPATQATVIAGPLSMDV 145

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                 V      L   E ++L +L+  +G    + QI  A++G  + AV E  V+  I+
Sbjct: 146 GRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTRGQIVDAVHG-ENYAVTERSVDVTIA 204

Query: 196 KLRKKLRNKLGFDPVDSKRFLGY 218
            LRKKL     F  +++ R +GY
Sbjct: 205 GLRKKLGPCADF--IETVRGVGY 225


>gi|261409756|ref|YP_003245997.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286219|gb|ACX68190.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  R IR +S +P++ +S        +    +G DD + KP +  E+  RV  + RR  
Sbjct: 63  IDTCRRIRENSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRRST 122

Query: 121 VSN---NRAETGPIRVFSDGRD-------PEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             N   ++ ++  IR+  DG D           G    L  RE  IL  L    G+  + 
Sbjct: 123 QYNVDLHQGDSDRIRI--DGLDINRTTHEVTANGHAISLTAREFEILYLLARQPGRIFSA 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             IF  ++      V  N V  HIS LR KL  +LG+  + +   +GY I
Sbjct: 181 EDIFQQVWK-EKYYVSNNTVMVHISNLRDKLEKELGYKLIQTVWGVGYKI 229


>gi|332559743|ref|ZP_08414065.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332277455|gb|EGJ22770.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 7/155 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  SQVP+I +S        +   D+G  D V KP    E LAR+ A+ R   
Sbjct: 64  IEVLRTVRGWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRS 123

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +      + +    R   V G    L RRE  +L  L +  G+ V +  I   I+
Sbjct: 124 GPAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           G    A EE+    ++    ++LR KLG D  D +
Sbjct: 184 G---PAHEED--SQYLRVYIRQLRAKLGDDAADPR 213


>gi|331268264|ref|YP_004394756.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329124814|gb|AEB74759.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 216

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I ++   S+   +     G DD + KP  + E+LAR+  + RR    +   +   I 
Sbjct: 71  IPVIFLTAKNSVIDKVKGLRLGADDYIVKPFENIELLARIEVVERRYNKDDKIIKFKNIE 130

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V  + R  ++ G+   L  +E ++L   + N+   +++ QI + ++G +D   E   V+ 
Sbjct: 131 VDINKRIVKLNGDYVELTLKEFQLLLLFIKNKNIALSREQILNKVWG-YDYVGETRTVDI 189

Query: 193 HISKLRKKL 201
           H+++LR+KL
Sbjct: 190 HVNRLREKL 198


>gi|296104894|ref|YP_003615040.1| DNA-binding transcriptional regulator BasR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059353|gb|ADF64091.1| DNA-binding transcriptional regulator BasR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 220

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      ++G +L+   +    + L  S    +  ++  L  K    L
Sbjct: 3   LLIVEDDLLLQEGLALALSNEGYALDCAATAAEADALIQSGEYSLVILDLGLPDKDGATL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R     P++ ++   +++  ++  DSG DD + KP    E+ ARV A+ RR + 
Sbjct: 63  -LSQWRRRGVDNPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N    G I +    +    Q     +  +E  +L  L+   G+ V +  +   IY  
Sbjct: 122 HSDNLLTDGDITLNLQTQQVLCQSLPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYSW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+    KLG D + + R +GY ++
Sbjct: 182 QDDP-GSNTLEVHIHNLRR----KLGKDRIKTVRGVGYRLE 217


>gi|229096500|ref|ZP_04227471.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228686706|gb|EEL40613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 71  LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   I+G +D   
Sbjct: 131 IQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEEIWG-YDFEG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 190 NERTLDVHINRLREKFQEEKSKLSIKTIRGLGYRLE 225


>gi|229130510|ref|ZP_04259466.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228652849|gb|EEL08731.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
          Length = 219

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 56  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 115

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 116 KTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 175

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 176 KVWG-FEYIGNTRAVDIMVQRLRKKL 200


>gi|300362057|ref|ZP_07058234.1| DNA-binding response regulator [Lactobacillus gasseri JV-V03]
 gi|300354676|gb|EFJ70547.1| DNA-binding response regulator [Lactobacillus gasseri JV-V03]
          Length = 221

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            DSG DD + KP   +E+LAR+ +  RR  + + N  E G +   +      V      L
Sbjct: 91  LDSGADDYLTKPFSLKELLARLRSKERRDDQYTPNEVEVGDL-ALNVSEQELVSHNSIRL 149

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +E ++L YLM N GK  + + + + ++   ++A EE VV  +IS LR+KL++
Sbjct: 150 GSKETQLLNYLMLNEGKEFSTSDLLAHVWKDENDANEE-VVWIYISYLRQKLQS 202


>gi|226953556|ref|ZP_03824020.1| two-component regulatory system response regulator [Acinetobacter
           sp. ATCC 27244]
 gi|226835693|gb|EEH68076.1| two-component regulatory system response regulator [Acinetobacter
           sp. ATCC 27244]
          Length = 238

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 12/180 (6%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           S + D+  ++  L   G   L + R +R H   P++ ++        +   + G DD V 
Sbjct: 49  SEQPDLVVLDVML--PGADGLTVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVA 106

Query: 101 KPIHHREILARVAAIYRRLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           KP+  R +LAR+ A+ RR   +       R E   + + + GR   + GE+      E  
Sbjct: 107 KPVQPRVLLARIRALLRRTDKTVEDEVAQRIEFDDLVIDNGGRSVTLHGELVDFTSAEYD 166

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +L  L +N G+ +++  IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 167 LLWLLASNAGRILSREDIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 221


>gi|221141766|ref|ZP_03566259.1| two-component sensor response regulator [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|304379852|ref|ZP_07362582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|269942212|emb|CBI50626.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|302752502|gb|ADL66679.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304341655|gb|EFM07564.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|329315345|gb|AEB89758.1| Two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus T0131]
          Length = 221

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I IS        +     G DD + KP +    +A++ A+ RR   L V+N
Sbjct: 66  IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +        +  D      Q +   L   E +IL+ L  N  K V++T +    +   + 
Sbjct: 126 DSLTVKGCTLILDEAKVVYQEQSIQLSLTELQILKLLFQNEDKYVSRTALIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +++N +  ++++L KKL N +G  D + +K+ +GY +
Sbjct: 185 FIDDNTLAVNMTRLCKKL-NTIGVNDFIITKKNVGYKV 221


>gi|28869425|ref|NP_792044.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28852666|gb|AAO55739.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 230

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 52  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 111

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 112 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 169

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 170 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 208


>gi|17545792|ref|NP_519194.1| two-component system response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
 gi|17428086|emb|CAD14775.1| probable two-component system response regulator transcription
           regulator protein [Ralstonia solanacearum GMI1000]
 gi|299067041|emb|CBJ38236.1| putative two-component system response, response regulator
           receiver, transcriptional regulatory protein [Ralstonia
           solanacearum CMR15]
          Length = 237

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFP 148
           +G DD V KP+   E++ARV A+ RR       S  R   GP  V   GR   + G    
Sbjct: 96  AGADDYVVKPVRRAELVARVGALLRRAAPRTGESLERMRVGPYAVDPLGRVLTLHGLQVE 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L  RE  +  YL  N GK V +  I  A++G      +   + +HISKLR KL
Sbjct: 156 LSPREFDLALYLFRNVGKLVPRELIEQAVWG-RSIGPDSRTLATHISKLRLKL 207


>gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 223

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+     G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222


>gi|71898251|ref|ZP_00680425.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71731990|gb|EAO34047.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 394

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 5/167 (2%)

Query: 57  GEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G   +E+ R +R  A  Q P++ ++   SL   L  FDSG DD + KP   +E+  R+ A
Sbjct: 225 GMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNA 284

Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR K    R  ETG +    D  +   +G++  L     +IL+ LM      V +  +
Sbjct: 285 LSRRGKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 344

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G  +E  + + +  HI  LR  +        + ++  +GY I
Sbjct: 345 ETRVWG--EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 389


>gi|228911099|ref|ZP_04074906.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228923993|ref|ZP_04087270.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835792|gb|EEM81156.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228848603|gb|EEM93450.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 219

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 56  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 115

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 116 KTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 175

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 176 KVWG-FEYIGNTRAVDIMVQRLRKKL 200


>gi|227894305|ref|ZP_04012110.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227863882|gb|EEJ71303.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 238

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121

Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +           ++   + G + +  D    E  G+   L  RE  +L YL  + G+ + 
Sbjct: 122 IVKKAEAATQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+  N +    + ++R +GY +
Sbjct: 182 REHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYV 232


>gi|218438132|ref|YP_002376461.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218170860|gb|ACK69593.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 227

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 108/219 (49%), Gaps = 13/219 (5%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           +AL +  YI  +  DG   E +N L+  +W +     +++ I+  L G     +EL + +
Sbjct: 18  KALNQKKYIVDWVQDGT--EAWNCLD-SQWTEY----NLAIIDWLLPGMSG--IELIKRL 68

Query: 68  RA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           RA  + +P++ ++    ++  +   D+G DD + KP    E+LAR+ A+ RR  ++   +
Sbjct: 69  RARQNSLPVLMLTAKDQMEDKVIGLDAGADDYLVKPFGMAELLARLRALGRRSPQLVPQQ 128

Query: 126 AETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            + G + +    R    QG +   L  +E  +LEY   +  + +   QI + ++ + +E 
Sbjct: 129 LQRGDLILDYGTRTVFYQGNQTLSLTTKEFLLLEYFFNHPNQILTSEQIRNQLWEMGEEP 188

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  NVV + +  LR+KL      + +++   +GY  + N
Sbjct: 189 M-SNVVAAQVRLLRRKLETVDCKNVIETVHGVGYRFNLN 226


>gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 235

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR  
Sbjct: 62  VEVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQI 121

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +        +N  E G + ++ D      + E   L  RE  +L YL  + G+ + +  
Sbjct: 122 ATPQTEEESESNDIEIGSLVIYPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 229


>gi|146283707|ref|YP_001173860.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
 gi|145571912|gb|ABP81018.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
          Length = 244

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R A  ++P++ ++    ++  +   + G DD + KP    E+LARV  + R   
Sbjct: 80  EVLRMVRSAGHEIPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLR--- 136

Query: 121 VSNNRAETGPIRVFSDGRDPEV---------QGEVFPLPRRERRILEYLMANRGKRVAKT 171
               R    P +      D EV          G+   L  +E  +LE LM  RG+ + K+
Sbjct: 137 ----RGSGSPTQTTVKISDLEVDLLKRRAVRAGKRIDLTAKEFSLLELLMRRRGEVLPKS 192

Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I S ++ + FD   + NV+E  + +LR K+ +      + + R +GY +D
Sbjct: 193 LIASQVWDMNFDS--DTNVIEVAVRRLRAKVDDDFEHKLIHTVRGMGYMMD 241


>gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 238

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAREIRKKHDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQN 121

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +         N   E G + +  +      +G    L  RE  +L YL  + G+ + + 
Sbjct: 122 TAAHAQPEEPENQDIEIGDLTIHPEAYSVSKRGANIELTHREFELLHYLAQHIGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 182 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIED 212


>gi|66044744|ref|YP_234585.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255451|gb|AAY36547.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   Q VP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EVIRRLRTVGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRR-G 119

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            SN   +T    G ++V    R     G+   L  +E  +LE LM  +G+ ++K+ I S 
Sbjct: 120 SSNLPVQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIASQ 179

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + FD   + NV+E  I +LR K+ +      + + R +GY +D
Sbjct: 180 VWDMNFDS--DTNVIEVAIRRLRAKIDDDFEAKLLHTCRGMGYMLD 223


>gi|317500101|ref|ZP_07958336.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087672|ref|ZP_08336599.1| hypothetical protein HMPREF1025_00182 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898586|gb|EFV20622.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330410364|gb|EGG89797.1| hypothetical protein HMPREF1025_00182 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 230

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 22/220 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67
           AL K+GYI          + F+  E    LQ   R  V  ++  L G  GE+VL   R I
Sbjct: 23  ALEKEGYICT--------QAFSGTEARMILQGE-RYSVILLDLMLPGIPGEEVL---RDI 70

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R     P+I ++   ++   ++F   G DD V KP   +E+ ARV    RR + +  + E
Sbjct: 71  RKKGNTPVIILTAKDTIDDKVEFLRGGADDYVTKPFDIKEVTARVEVQIRRAETTGRKEE 130

Query: 128 T-----GPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                   + +       +V     P + ++E  ILE L+ +  K  +K ++F   Y   
Sbjct: 131 EHRFTYQELELNKGDFTVKVGNTELPHITKQEFSILELLLKHPKKVFSKEEMFE--YAWE 188

Query: 182 DEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ + E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 189 EQYMGETKTLDVHISNIRKKIKAVTDKEYIETVWGIGYRL 228


>gi|313889289|ref|ZP_07822940.1| response regulator receiver domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122337|gb|EFR45425.1| response regulator receiver domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 232

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 17/155 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VLE+   IR    +P++ ++      + +     G DD + KP +  E+ ARV A+ 
Sbjct: 61  GFQVLEM---IREECTIPVLMLTAKSDDDSKIYGLKRGADDYLTKPFNINELKARVEAMV 117

Query: 117 RRLKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR    N ++           +++  + R  ++      L  +E  +L +L +N+G+   
Sbjct: 118 RRYIDFNQKSTDQSDILTIDGMQIDKENRIVKISDNNIELTNKEFDLLYFLASNKGRIFT 177

Query: 170 KTQIFSAIYG---LFDEAVEENVVESHISKLRKKL 201
           K QI++ ++    LFD++   N++ S ISKLRKK+
Sbjct: 178 KKQIYTNVWEEDYLFDDS---NIM-SFISKLRKKI 208


>gi|317132097|ref|YP_004091411.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470076|gb|ADU26680.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 7/155 (4%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G+   ++ R +R+  +VP+I +S        +   D G DD + KP    E++ARV
Sbjct: 53  LMLPGKNGFDIIRDVRSTQEVPIIVVSAKAEDIDKIRGLDVGADDYLTKPFSPAELIARV 112

Query: 113 AAI---YRRLKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            +    Y RLK +  + E    R   +    R   V G    L  +E  +L +L +N   
Sbjct: 113 QSHIRRYERLKGNKTQEEILSFRGLEIHHAARRVTVSGREVQLTAKEYDLLYFLASNPNI 172

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              K  +F  I+G+ D+  +   V  HI ++RKK+
Sbjct: 173 VFTKEHLFDTIWGV-DDYGDLATVPVHIQRIRKKI 206


>gi|253681323|ref|ZP_04862121.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562561|gb|EES92012.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 73/150 (48%), Gaps = 14/150 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  S++P+I ++        +   + G DD + KP   +E++AR+ A+ RR  
Sbjct: 65  IDVLKWIRRDSEIPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYN 124

Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +   +    +  +          +D E++     +P +E  +L YL +N  K   + Q
Sbjct: 125 TESVDRDILKFKGLTIDINSYIVIYKDKEIK-----MPPKEFELLYYLASNTNKVFTREQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +   ++G +D   +   V+ HI +LR+KL+
Sbjct: 180 LLCEVWG-YDYPGDSRTVDVHIKRLREKLQ 208


>gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 223

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+     G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222


>gi|167036701|ref|YP_001664279.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115125|ref|YP_004185284.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855535|gb|ABY93943.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928216|gb|ADV78901.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 231

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRR--- 119

Query: 122 SNNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +++      +  F++            + +G V  L   E +IL++L+ N  +   + ++
Sbjct: 120 TSDDVPLAEVMSFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREEL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              + G FD    +  +++HI  LR+K+ +
Sbjct: 180 IEKVMG-FDYEGYDRTIDAHIKNLRQKIED 208


>gi|76799676|ref|ZP_00781781.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21]
 gi|76584971|gb|EAO61624.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 6/116 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGE-VFP 148
            D+G DD + KP   +E+LAR+ ++ RRL+  + N    G  RV     + E+Q E    
Sbjct: 91  LDAGADDYLTKPFSLKELLARLRSMSRRLEDFTPNVLSLG--RVTLSVGEQELQCENTIR 148

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL--FDEAVEENVVESHISKLRKKLR 202
           L  +E ++L + M N  K ++  Q+F  ++G     E V+E  V  ++S LR+KL+
Sbjct: 149 LAGKEAKMLAFFMLNHDKELSTQQLFEHVWGADKDQEDVDEGYVFIYVSYLRQKLQ 204


>gi|239831456|ref|ZP_04679785.1| Transcriptional activator protein copR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823723|gb|EEQ95291.1| Transcriptional activator protein copR [Ochrobactrum intermedium
           LMG 3301]
          Length = 235

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 9/154 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   +    +G DD + KP    E+LARV  + RR   S   A+T   
Sbjct: 72  ETPVLVLSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRR--SSPREADTIYR 129

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            G + +         Q     L  RE R+LEYLM + G+ V +T +   ++   FD   +
Sbjct: 130 VGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP--Q 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            NV++ HIS+LR K+        + + R  GY +
Sbjct: 188 TNVIDVHISRLRSKIEKGFDVPLLHTVRGAGYML 221


>gi|229169551|ref|ZP_04297255.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613941|gb|EEK71062.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 229

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 63/147 (42%), Gaps = 8/147 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +    + S  
Sbjct: 66  RRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQASKK 125

Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E          I V    R   V      L   E  IL Y M N+G  + + Q+ S I
Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLISRI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204
           +G ++ A ++  V SHI  LR KL  K
Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEK 211


>gi|296127491|ref|YP_003634743.1| two component transcriptional regulator, winged helix family
           [Brachyspira murdochii DSM 12563]
 gi|296019307|gb|ADG72544.1| two component transcriptional regulator, winged helix family
           [Brachyspira murdochii DSM 12563]
          Length = 227

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 5/167 (2%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           +G ++L++ R   AH  + +I ++   S    +   + G DD + KP    E+LAR+ A 
Sbjct: 61  EGTEILKIIRTDYAHLPIKVIMLTAKASEINIVTGLNLGADDYMPKPFSVLELLARIKAN 120

Query: 116 YRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            R+  V  +  E   G I++    R   V      L ++E  +L+ LM N    V +  +
Sbjct: 121 LRKKDVRLDAEELTFGEIKLVVKKRSVFVGERQVVLTQKEFDLLKLLMENANNVVDRETM 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G+ D ++E   ++ HI  +R+KL   L  + + + R +GY +
Sbjct: 181 LEEVWGV-DHSMETRTIDMHIKSIRQKL--DLTKENIITVRGMGYKL 224


>gi|221197319|ref|ZP_03570366.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221203992|ref|ZP_03577010.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221176158|gb|EEE08587.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221183873|gb|EEE16273.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 221

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 6/154 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR     +   T
Sbjct: 69  AGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHASDVLT 128

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAVE 186
            G + +    R  E+ G+   L R+E  +LE ++A+R +R+ +K ++ + ++   +E   
Sbjct: 129 LGGLVIDRSSRLAELDGKPLSLSRQEFALLE-ILASRPQRIFSKDELLNQLFSFGNEP-S 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N VE +++++RKKL        + + R +GY I
Sbjct: 187 ANAVEQYVTRVRKKLHGS--SVEIRTARGMGYQI 218


>gi|218132898|ref|ZP_03461702.1| hypothetical protein BACPEC_00759 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991771|gb|EEC57775.1| hypothetical protein BACPEC_00759 [Bacteroides pectinophilus ATCC
           43243]
          Length = 237

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ET 128
             +P+I ++   S    +   D G DD + KP    E+++RV AI RR + +++    + 
Sbjct: 86  CNIPVIMVTAKSSEIDKVKGLDQGADDYMTKPFGVMELISRVKAILRRSRNTSDEKIFKA 145

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G I +  +     V  E   L  +E  +L+ L++N G  +++  I   I+G   E  E  
Sbjct: 146 GDIIINEERHAVYVNDEPVELTFKEYNLLKLLISNYGIVMSREVIMDRIWGTSFEG-ESR 204

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ HI  LRKKL        + + R +GY+I
Sbjct: 205 TLDMHIKTLRKKLGESGSM--IKTVRNVGYAI 234


>gi|254465850|ref|ZP_05079261.1| two component transcriptional regulator, winged helix family
           [Rhodobacterales bacterium Y4I]
 gi|206686758|gb|EDZ47240.1| two component transcriptional regulator, winged helix family
           [Rhodobacterales bacterium Y4I]
          Length = 240

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 12/210 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD   V++   AL  + G        +     L      D++ I+  L  +GE  
Sbjct: 9   LIAIVDDDPNVRETLSALMQESGFDAVCCAGIAAFHALGDPPPVDLALIDLRL--RGESG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L   IR   Q+P++ ++        +   ++G DD + KP + RE++AR+ A+ RR  
Sbjct: 67  LTLAIHIRERYQLPIVMLTGIGDEIDKIIGLETGADDYMIKPFNPRELVARIRAVLRRYG 126

Query: 121 VSNNRAETGPIRVFSDG---------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
               R    P +    G         R  +  GE  PL   E R+LEY   N  + + + 
Sbjct: 127 HGTTRPSAAPGQEIGFGDLRLDVQYRRLLDKDGEEIPLTNAEYRLLEYFARNPNRVIPRP 186

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++   +       V+   ++  I +LR+K+
Sbjct: 187 ELLEELGSDMQRYVDRT-IDVLILRLRRKI 215


>gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 235

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 3/175 (1%)

Query: 48  AIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106
           AI   L+  G    E+ R +RA  +  P++ ++    +   +   D+G DD + KP    
Sbjct: 47  AIVLDLMLPGLDGFEVCRRLRAARRWSPILMLTARGDVDDRIHGLDAGADDYLAKPFSFG 106

Query: 107 EILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           E+ AR+ A+ RR  V        G I +    R  +  GE   L  +E  +LE LM   G
Sbjct: 107 ELTARLRALIRRGAVERPATLRVGDIHLDPAARSVQRAGEPVDLSAKEFSLLELLMRRPG 166

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + ++ I   ++ L  +    NVV+ ++  LR+K+    G   +++ R  GY +
Sbjct: 167 EVLTRSYILDHMWDLGYDGT-SNVVDQYVRYLRRKIDPADGLSRIETVRGAGYRL 220


>gi|148241349|ref|YP_001226506.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849659|emb|CAK27153.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 252

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 13/159 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++  +   
Sbjct: 77  LRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKEHGGG 136

Query: 127 --------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   +++ ++ R     GE   L   E  +LE L++  G+  ++ +I   ++
Sbjct: 137 SIPNSGVIQVSDLKIDTNKRQVYRAGERIRLTGMEFSLLELLVSRSGEPFSRGEILKDVW 196

Query: 179 GLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           G   E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 197 GYTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 231


>gi|144900225|emb|CAM77089.1| phosphate regulon transcriptional regulatory protein phoB
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 233

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126
           A  ++P+I ++        +   ++G DD + KP    E++AR+ A+ RR++    +   
Sbjct: 75  ATRELPIIMLTARGEEGDKIRGLNTGADDYMTKPFSLPELMARIRAMLRRVQPVPQKGML 134

Query: 127 ETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E G I +       + G  P   G        E R+L++ M + G   ++ ++ +A++G 
Sbjct: 135 EYGDIAMDLAAHRVTRGDRPVHLGPT------EFRLLQFFMQHPGNVFSREELLNAVWG- 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D  VE   V+ HI +LRK L      D + + R  GY++D
Sbjct: 188 PDIYVEPRTVDVHIRRLRKALNGDNDADIIRTVRAAGYALD 228


>gi|46199299|ref|YP_004966.1| two-component response regulator [Thermus thermophilus HB27]
 gi|46196924|gb|AAS81339.1| two-component response regulator [Thermus thermophilus HB27]
          Length = 227

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 2/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P++ ++   ++   +     G DD + KP H  E+LAR+    R  + 
Sbjct: 62  EVARRIRATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAELLARIQVQLRHKEG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S   A  G + ++   R    +     L  +E  +L  LM+  G+   + +I   ++G  
Sbjct: 122 SEVLA-VGQLELYPRKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWG-R 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               + NV++ H++ LR KLR    +  + + R +GY++
Sbjct: 180 PLGKDSNVLDVHMANLRAKLREAGAYGYLRTVRGVGYAV 218


>gi|42526170|ref|NP_971268.1| response regulator [Treponema denticola ATCC 35405]
 gi|41816282|gb|AAS11149.1| response regulator [Treponema denticola ATCC 35405]
          Length = 232

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  SQVP+I +S        +     G DD + KP      +A++ A+ RR      S 
Sbjct: 70  IRNKSQVPIIFLSSRNDKMDIVMAMQMGGDDYIEKPFDMDITIAKIQAVIRRTYQFTASM 129

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N        +           +   L   E +IL+ L   +G+ V++ +I   ++   ++
Sbjct: 130 NEIGFAGTVLNLSTLTLVYNNKTTLLTANEIKILKCLYLAQGEFVSREKIMDVLWQ-NNQ 188

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            V++N +  +I++LRKK+ N   F+ +++K+ LGY ++
Sbjct: 189 FVDDNTLSVNITRLRKKMENAELFNFIENKKGLGYKLN 226


>gi|33866407|ref|NP_897966.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33633185|emb|CAE08390.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 208

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 78/155 (50%), Gaps = 10/155 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-- 130
            P++ ++ +  +   +   D+GVDD + KP    E++AR+ A+ RR +  + R E G   
Sbjct: 48  TPILMLTGHEEVSDRVTALDAGVDDYLIKPFSIDELMARLRAMQRRAEAFSGRNEPGQEA 107

Query: 131 -------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  + + +  RD +  G    L  +E  +L  LM   G+ + + +I  A++G  + 
Sbjct: 108 VQLRVADLSMDTRTRDVKRTGRSIQLSVKEYDLLNCLMRGSGRVLERQEIMRAVWG-ENF 166

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++N+++ +I  LRKK+ +K     + + R +G+
Sbjct: 167 YGDDNLLDVYIRYLRKKVESKDAPTLIHTVRGVGF 201


>gi|25011440|ref|NP_735835.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76787910|ref|YP_329969.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77411169|ref|ZP_00787521.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|24412978|emb|CAD47057.1| unknown [Streptococcus agalactiae NEM316]
 gi|76562967|gb|ABA45551.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77162787|gb|EAO73746.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 6/116 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGE-VFP 148
            D+G DD + KP   +E+LAR+ ++ RRL+  + N    G  RV     + E+Q E    
Sbjct: 91  LDAGADDYLTKPFSLKELLARLRSMSRRLEDFTPNVLSLG--RVTLSVGEQELQCENTIR 148

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL--FDEAVEENVVESHISKLRKKLR 202
           L  +E ++L + M N  K ++  Q+F  ++G     E V+E  V  ++S LR+KL+
Sbjct: 149 LAGKEAKMLAFFMLNHDKELSTQQLFEHVWGADKDQEDVDEGYVFIYVSYLRQKLQ 204


>gi|330823712|ref|YP_004387015.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|329309084|gb|AEB83499.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 243

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 6/140 (4%)

Query: 67  IRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +R H  +++P++ +++    +  +     G DD + KP+   E++AR+ A+ RR   S+ 
Sbjct: 66  VRQHLGAELPILFVTNRQEERDIVQGLACGADDFMVKPVRVGELMARIQALLRRAYPSST 125

Query: 125 RA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           R    E G  R     R  E+ G    L  RE  +  +L  N G+ +++  +   I+G  
Sbjct: 126 REGVLEFGRYRFLPATRSLEMDGVPVELKAREYELALFLFQNIGRLLSRDHLREIIWGHS 185

Query: 182 DEAVEENVVESHISKLRKKL 201
            E +  + +++HIS+LR  L
Sbjct: 186 AEVISRS-LDTHISRLRSLL 204


>gi|323706070|ref|ZP_08117639.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534514|gb|EGB24296.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 2/157 (1%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
           R +R  S  P+I +S    ++  +   D G DD + KP    E++AR+  + R+   SN 
Sbjct: 66  RELRKKSSTPVIILSAKDEVKDKVFGLDIGADDYLTKPFSIEELMARIRNVLRKNAKSNA 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N+     I +     + +  G    L ++E  +L+YL+ N    + +  I   ++G ++ 
Sbjct: 126 NKLVYDGITMDLSTYEVKRDGIKIELTKKEFELLKYLIINSEIVLTRENILENVWG-YNY 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E N+V+ +I  LR K+        + + R +GYS+
Sbjct: 185 IGETNIVDVYIRYLRSKIDEPFDNKLIQTIRGVGYSL 221


>gi|229823749|ref|ZP_04449818.1| hypothetical protein GCWU000282_01051 [Catonella morbi ATCC 51271]
 gi|229786788|gb|EEP22902.1| hypothetical protein GCWU000282_01051 [Catonella morbi ATCC 51271]
          Length = 218

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 4/155 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ ++     +  +  FD  VD  + KP     +  R+ A+ +R     +  
Sbjct: 66  IRKTSTVPVLMLTAVADEEAQIKTFDLLVDGYIQKPFSLALLAKRIEALLKRHYGEFDIW 125

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           E    +V     +   +GEV     +E  +L+ L+ ++G+ +++ QI   ++   D+   
Sbjct: 126 EYKDSKVNFSSYEATYKGEVADTKPKELAVLKLLLDHQGQVLSRAQILDHVWANQDDPPF 185

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + VV+ +I    K+LR  LG D + + + +GY ++
Sbjct: 186 DRVVDVYI----KQLRKNLGLDCIVTVKNVGYKLE 216


>gi|229133604|ref|ZP_04262431.1| Sensor histidine kinase [Bacillus cereus BDRD-ST196]
 gi|228650004|gb|EEL06012.1| Sensor histidine kinase [Bacillus cereus BDRD-ST196]
          Length = 231

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 13/207 (6%)

Query: 27  EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N   + + +E LQ     +V  +   ++      L + + +R ++ VP++ +S    
Sbjct: 25  EGYNIYKAYDGDEALQMICTYEVDLMLLDIMMPKRNGLAVCQEVRENNTVPILMLSAKAE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135
               +    +G DD + KP +  E++ARV A+ RR    N    + E G IR+ S     
Sbjct: 85  DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGIIRIRSVEIHK 144

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                +V GE   L   E  IL  L +N G+  +  +IF  ++   D       V  HIS
Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
            LR KL   + G   + +   +GY I+
Sbjct: 204 NLRDKLETVMNGEKLIHTVWGVGYKIE 230


>gi|254477021|ref|ZP_05090407.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           sp. R11]
 gi|214031264|gb|EEB72099.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           sp. R11]
          Length = 229

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +++ ++   +P+I +S        +   ++G DD V KP    E++ARV    R
Sbjct: 65  IEVCRRLKSRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLR 124

Query: 118 RLKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++ S    R E   I + ++            L   E R+L   M   G+  ++ Q+  
Sbjct: 125 RVRPSTVGVRLEFDDIVLDAETHKVSRADTQLKLGPTEFRLLSTFMEKPGRVWSREQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 185 RVWG-RDIYVDTRTVDVHIGRLRKALTQHGGSDPVRTVRGAGYAL 228


>gi|163796479|ref|ZP_02190439.1| DNA-binding response regulator, putative [alpha proteobacterium
           BAL199]
 gi|159178329|gb|EDP62873.1| DNA-binding response regulator, putative [alpha proteobacterium
           BAL199]
          Length = 229

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 13/148 (8%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R++R H  + P+I ++   S   T+   D+G +D + KP     +LAR+ A  R+ +
Sbjct: 66  ELCRLMRKHGVKAPVIMLTAQDSDADTILGLDAGANDYITKPFKVAILLARIRAQLRQHE 125

Query: 121 VSNNRAET-GP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            S++   T GP       ++  D    EV+ +   L  +E  IL+YL     + V +  +
Sbjct: 126 QSDDAVFTIGPYSFKPAAKILLD----EVRNKKVRLTEKETAILKYLYRAGDRMVKRDTL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            + ++G ++  V  + +E+H+ +LR+K+
Sbjct: 182 LNEVWG-YNAGVTTHTLETHVYRLRQKI 208


>gi|157273493|gb|ABV27392.1| transcriptional regulatory protein [Candidatus Chloracidobacterium
           thermophilum]
          Length = 242

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 16/141 (11%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A + VP+I ++        +     G DD + KP   RE++AR+ A+ R       R E 
Sbjct: 74  ATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAVLR-------RTEG 126

Query: 129 GPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            P  V+ DG             QG+   L R+E  +L+ L  ++G+ + +  +   ++G+
Sbjct: 127 TPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLLDRVWGI 186

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D   E   ++ HI ++R+KL
Sbjct: 187 -DYDGETRTLDVHIRRVRQKL 206


>gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
 gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
          Length = 236

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 11/170 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR +
Sbjct: 62  MEVCREIRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQ 121

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     + N    G + +  D      +G+   L  RE  +L YL  + G+ + + 
Sbjct: 122 HGAAQQAAEGAKNEIAVGSLVIHPDAYIVSKRGDTIELTHREFELLHYLAKHIGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+  N    + + ++R +GY +
Sbjct: 182 HLLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|118443624|ref|YP_877546.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134080|gb|ABK61124.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 232

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 11/143 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR +K +N +
Sbjct: 69  IREKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVKFNNYK 128

Query: 126 AET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +     G I +  + +   V GE   L   E +ILE+LM + G+  +  QI+  ++  
Sbjct: 129 SNSQELKVGGIILNKNTKSVSVDGEEVRLTPIEYKILEFLMESTGQVFSIEQIYENVW-- 186

Query: 181 FDEAV--EENVVESHISKLRKKL 201
            +E     EN V  HI ++R+K+
Sbjct: 187 -NEPCYNAENTVPVHIRRIREKI 208


>gi|159898827|ref|YP_001545074.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891866|gb|ABX04946.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 74/141 (52%), Gaps = 3/141 (2%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VS 122
           + IR  S  P+I ++   S +  +   + G DD V KP + RE++ARV A+ RR +   +
Sbjct: 66  KTIRQTSNTPIIMVTARSSDEERIHGLELGADDYVGKPFNARELVARVRAVLRRSQPIQA 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +   + GPI +  +     V  +   L + +  +L   M +  + +++ Q+  A++   D
Sbjct: 126 SQMLKRGPIELDLEQHSCTVNQQPVELSKIQLALLATFMRHPNQILSREQLLEAVFA-GD 184

Query: 183 EAVEENVVESHISKLRKKLRN 203
            A  +  +++HI++LR+++ +
Sbjct: 185 YAGFDRSLDAHIARLRQRIEH 205


>gi|254254972|ref|ZP_04948289.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124899617|gb|EAY71460.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 221

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 20/215 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L + G+      DG +  G   +E         R D+  ++A L G  G  VL   R +R
Sbjct: 20  LARLGHAVDLEADGATAHGLLRVE---------RFDLVVLDANLPGMDGFTVL---RNLR 67

Query: 69  AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           A  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR     N   
Sbjct: 68  ASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHANDVL 127

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAV 185
           T G + +    R  E+ G+   L R+E  +LE ++A+R +R+ +K ++ + ++   +E  
Sbjct: 128 TLGGLAIDRSSRLAELDGKPLSLSRQEFALLE-ILASRPQRIFSKEELLNQLFSFGNEPT 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             N VE +++++R+KL        + + R +GY I
Sbjct: 187 -ANAVEQYVTRVRRKLAGS--SVEIRTVRGMGYQI 218


>gi|320324918|gb|EFW80990.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. glycinea str. B076]
          Length = 267

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+
Sbjct: 89  LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 148

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165
             I RR  V + R++      F   R   V        G V PL   E R+L   +    
Sbjct: 149 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 206

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           + +++ Q+  A  G   EA + +     I  L  +LR KLG DP
Sbjct: 207 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 245


>gi|302188629|ref|ZP_07265302.1| two component transcriptional regulator [Pseudomonas syringae pv.
           syringae 642]
          Length = 220

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 24/219 (10%)

Query: 8   RALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           +AL ++GY   +  DG S L    S  F+  +       +S  E            L R+
Sbjct: 18  QALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGFEV-----------LRRL 66

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
             + S +P++ ++   + +  +   D G DD + KP    E+ AR+ A+ RR   S  RA
Sbjct: 67  RHSGSTLPVMILTARDATEDRIIGLDIGADDYLVKPFDVSELKARLRALLRR---SAGRA 123

Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E   IR+    +          L  +E ++L  L++  G+ + + ++   +YG ++
Sbjct: 124 KVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG-WN 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           E  E N +E HI  LRKK  + L    + + R +GY ++
Sbjct: 183 EEAESNTLEVHIHHLRKKFSSTL----IRTIRGVGYLVE 217


>gi|229028377|ref|ZP_04184501.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732925|gb|EEL83783.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 223

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 12/150 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VS 122
           IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K    VS
Sbjct: 67  IRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKKDGFVS 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N  E    +         V  E  PL   E  +L   + N  +  ++  +   I+G ++
Sbjct: 127 FNGIEWDKTK-----HTVTVYDEKIPLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-YE 180

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDS 212
             +E   ++SHI  +R KLR K GF PV++
Sbjct: 181 TDIEYRTIDSHIRNIRDKLRKK-GF-PVEN 208


>gi|255281904|ref|ZP_05346459.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
 gi|255267577|gb|EET60782.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
          Length = 224

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  + IR  +  +P++ ++           F  G DD + KPI   ++L R+ A+ RR +
Sbjct: 62  EFTKTIRETNDALPILMVTAKQDAADEKQGFLVGTDDYITKPIDEEKMLLRIKALLRRAQ 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            VS  +   G + +  +      +GE   LP++E  +L  L++  G+   + Q+   I+G
Sbjct: 122 IVSERKIVIGDVTLDYNSFTVSRKGETQVLPQKEFLLLYKLLSYPGQIFTRIQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              E   E V   H+ +LR++      F+ + S R LGY
Sbjct: 182 SDSETGWETVT-VHVGRLRRRFEGWEEFE-IKSVRGLGY 218


>gi|225571197|ref|ZP_03780195.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
           15053]
 gi|225160028|gb|EEG72647.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
           15053]
          Length = 233

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 28/217 (12%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V  DDR +V+   I L  +    L+ ++  E  + LQS  + D+  I+  +       
Sbjct: 6   ILVCDDDREIVEAIDIYLTQEGYEVLKAYDGEEALKVLQSE-KVDLLIIDVMM------- 57

Query: 61  LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
              PR+        IR  + +P+I +S        +   + G DD V KP +  E++ARV
Sbjct: 58  ---PRLDGIRATLKIREQNNMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARV 114

Query: 113 AAIYRRLK-----VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
            +  RR       VS +     E G + +  D ++  V GE+  L   E  IL  L+ N+
Sbjct: 115 KSQLRRYTQLGSTVSGDSQAVYEVGGLSINDDLKEVTVDGELVKLTPIEYNILLLLVKNQ 174

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           GK  +  QI+  I+   D    +N V  HI  +R+K+
Sbjct: 175 GKVFSIDQIYENIWN-EDAIGVDNTVAVHIRHIREKI 210


>gi|218534663|ref|YP_002424425.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis]
 gi|218473132|emb|CAQ76560.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis]
          Length = 226

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 35/228 (15%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELP 64
           +RAL + G+      DG   EG + +LEF+         D   ++  L G  G +VLE  
Sbjct: 17  NRALSESGFTVDVSADGA--EGLHYALEFDY--------DAIILDVMLPGMDGYRVLE-- 64

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
             +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR      
Sbjct: 65  -GVRAAKQTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRATDGA 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L++ +   +    RVF  G   E+  + F L       L  L  ++G+ ++K  I 
Sbjct: 124 DITQLQIHDLHLDLLARRVFRAGTRLELTAKEFSL-------LSLLARHQGEILSKMMIA 176

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I+ + FD   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 177 EQIWDMNFDS--DANVVEVAIKRLRAKVDAPFDIKLLHTVRGMGYVLE 222


>gi|198277154|ref|ZP_03209685.1| hypothetical protein BACPLE_03362 [Bacteroides plebeius DSM 17135]
 gi|198269652|gb|EDY93922.1| hypothetical protein BACPLE_03362 [Bacteroides plebeius DSM 17135]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 13/153 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G K+  + +  +    +P+I I+   +   TL  F+ G DD ++KP   RE++ RV A+ 
Sbjct: 61  GFKMASMMKKNKDTQNIPIIFITAKDTENDTLTGFNLGADDYISKPFSLREVIMRVKAVL 120

Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR      +    P ++   G       +   +  E   L ++E  IL  L+ N+G+  +
Sbjct: 121 RRTAGVQTQV---PEQLIYKGLSVNIPKKKVTINNEEISLTKKEFEILLLLLQNQGRVFS 177

Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           +  I + ++   DE  V +  ++ +I++LRKK+
Sbjct: 178 REDILAKVW--HDEVYVLDRTIDVNITRLRKKI 208


>gi|197302877|ref|ZP_03167929.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
 gi|197298114|gb|EDY32662.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
          Length = 233

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 24/158 (15%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR +V
Sbjct: 65  QVCREIRAKSVTPIIMLSAKSEVFDKVLGLELGADDYIMKPFDAKEMVARVRAVLRRYQV 124

Query: 122 SNN----RAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                  R +T  +             V  DG++ E       +P +E  +L  L A+  
Sbjct: 125 GRQAEPAREKTKCVEYEGLTINLTNYSVLCDGKNVE-------MPPKELELLYCLAASPN 177

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   + Q+   I+G ++   +   V+ HI +LR+K+++
Sbjct: 178 QVFTREQLLDRIWG-YEYIGDTRTVDVHIKRLREKIKD 214


>gi|108801478|ref|YP_641675.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870631|ref|YP_940583.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437463|ref|YP_001073154.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771897|gb|ABG10619.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696720|gb|ABL93793.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237263|gb|ABO00664.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 247

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 84/191 (43%), Gaps = 11/191 (5%)

Query: 22  DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI---IRAHSQVPLIGI 78
           DG +  G  +   ++ +++     V+  +  ++    + ++  RI   +R+   +P++ I
Sbjct: 43  DGAAAVGIETTWCDDGVEALLAIGVNPPDVLVLAARTRTVDAARITAAVRSRWDLPIL-I 101

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138
               +   T     SG   ++ +P     I     +   R + +  R   GPI V  DG 
Sbjct: 102 GSTTADDGTRQALTSGASALIVRPYDVAAIAPFARSAAHRPEPTGARYAAGPIEVNRDGY 161

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
           +  V+G    L +RE  +L YL+   G+  +  +I  A++G      + N V  H+    
Sbjct: 162 ETRVRGRDVQLTQRELELLVYLIERHGRVASSDEISRAVWG---HPADTNTVAVHV---- 214

Query: 199 KKLRNKLGFDP 209
           ++LR KLG DP
Sbjct: 215 RRLREKLGHDP 225


>gi|34540512|ref|NP_904991.1| DNA-binding response regulator [Porphyromonas gingivalis W83]
 gi|34396825|gb|AAQ65890.1| DNA-binding response regulator [Porphyromonas gingivalis W83]
          Length = 229

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 4/149 (2%)

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIR 132
           LI IS   +++  +   + G DD + KP H  E+  R+  + RR K ++   E   G + 
Sbjct: 75  LIIISAKDAIEDKVQGIELGADDYLTKPFHLLELNVRIKGLIRR-KTAHGAMEIKLGNVS 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF-DEAVEENVVE 191
           +  D  +  V+G    L R+E  IL +LM    + V K  +  A++G + D+A   + V 
Sbjct: 134 LVPDRFEVAVKGHPLELKRKEYDILYHLMTRPNRLVDKAALAEAVWGDYIDQADNYDFVY 193

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + I  LRK++ +      + S    GY +
Sbjct: 194 AQIKNLRKQMNDAGATIEIKSVYGFGYKL 222


>gi|312869863|ref|ZP_07730003.1| putative response regulator MprA [Lactobacillus oris PB013-T2-3]
 gi|311094603|gb|EFQ52907.1| putative response regulator MprA [Lactobacillus oris PB013-T2-3]
          Length = 221

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            D+G DD + KP   +E+LAR+ ++ RR+K  +++         + G           L 
Sbjct: 91  LDAGADDYLTKPFSLKELLARLRSLERRVKSYDDQDLAFADLHLNSGEQVLESHNSISLS 150

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           R E R+L+YL+ N GK +    I   ++    +A EE+V   +IS LR KL++
Sbjct: 151 REETRMLQYLIHNAGKELPAADILQRVWDGDQDADEEDVW-INISYLRHKLQS 202


>gi|311103968|ref|YP_003976821.1| transcriptional regulator TctD 1 [Achromobacter xylosoxidans A8]
 gi|310758657|gb|ADP14106.1| transcriptional regulatory protein TctD 1 [Achromobacter
           xylosoxidans A8]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 6/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGP 130
           + P++ ++   +LQ  +   + G DD + KP    E+ AR+ A+ RR +   + R + G 
Sbjct: 72  RTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVRRSRGRQHPRLQCGS 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +   S+ R   + G +  L  RE   L  L+   G  V K+Q+F  ++   D     + +
Sbjct: 132 LSYDSESRAFTLDGSLLFLTPREHAALAALLTRSGYPVDKSQLFGKVFT-HDSEANPDAI 190

Query: 191 ESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           E  + +LRKKL    G D  + + R LGY ++
Sbjct: 191 EVVLHRLRKKL---TGSDVRIVTVRGLGYMLE 219


>gi|300854603|ref|YP_003779587.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434718|gb|ADK14485.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 223

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S+VP+I IS        +   + G DD + KP     ++A+V A+ RR      + 
Sbjct: 67  IRRISRVPIIFISSMSDNMNIIMAVNMGGDDFIPKPFDLNILVAKVQALLRRTYSFGGKM 126

Query: 127 E----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +     G +   S     E + +   L + E +IL+ L+ N  K V +  I + ++   D
Sbjct: 127 DIIEHNGVVLNLSSAA-IEYENKKIELTKNEFKILQILLENVEKVVPRDVIMTRLWE-SD 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +++N +  +I++LRKKL +    D + +K+ +GY ++
Sbjct: 185 SYIDDNTLTVNITRLRKKLSDAGICDFIKTKKGIGYMVE 223


>gi|300310163|ref|YP_003774255.1| response regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300072948|gb|ADJ62347.1| response regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           +R+   +P + +S            D+G DD + +P    E++AR+ A+ RR    NNR 
Sbjct: 67  LRSGDPIPTLILSSASGGDVVARVLDNGADDFLQRPFDAVELVARINAVMRRCAPKNNRR 126

Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E    ++  D      QG    L  RE  +     ++ G  +++  + S I+   D  
Sbjct: 127 VIEYAGFQLQRDTAKFSYQGMGISLTPREFSMAWLFFSSPGVYISRETLGSVIWST-DSE 185

Query: 185 VEENVVESHISKLRKKLR 202
           +    +E H+ KLRKKL+
Sbjct: 186 IAGRTIEQHVYKLRKKLQ 203


>gi|296103743|ref|YP_003613889.1| DNA-binding transcriptional regulator BaeR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295058202|gb|ADF62940.1| DNA-binding transcriptional regulator BaeR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 240

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 6/153 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR K         AE+ P+ V         + ++  L   E R+L+ L    GK  
Sbjct: 122 KTILRRCKPQRELQVLDAES-PLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|291526990|emb|CBK92576.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 209

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 14/144 (9%)

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-------NRAETGPIRVFSDG 137
            T +  FD G  D + KP   RE+LARV    RR+  +N       N    G   + +D 
Sbjct: 73  NTIVRAFDEGAQDYIVKPFRIRELLARV----RRILSANIKNGEKDNIIYMGQAAIHTDE 128

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
               V  +   L   E R+L    +N+G  + + QI   I+      VE+N +  ++ +L
Sbjct: 129 AKVYVNDKSIELTALEYRLLLIFASNKGILLTRQQILDKIWDADGNFVEDNTLTVYVKRL 188

Query: 198 RKKLRNKLGFDPVDSKRFLGYSID 221
           R+KL   +  + V   R +GY +D
Sbjct: 189 REKLGEAIHIETV---RGMGYRVD 209


>gi|326316790|ref|YP_004234462.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373626|gb|ADX45895.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 230

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 7/168 (4%)

Query: 54  IGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +G G   L   R  RA   + P++ +S   S +  +   D+G DD + KP   +E+ AR+
Sbjct: 64  LGNGLTAL---RSARARGDRTPVLVLSARDSTEERIAGLDAGADDYLGKPYELKEVEARL 120

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A+ RR   S +    G +++    R   V G+   LP RE  +L  LM   G+ ++K+ 
Sbjct: 121 RALARRATGSGDLVTVGRLQLDRQARRCSVDGQALELPAREFELLWELMTPPGRVLSKSD 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +     EA+ +N +E+ +S+LR+KL        + + R LGY++
Sbjct: 181 LSQRLSD-AGEALGDNALEAFVSRLRRKLAGS--GAAIRTLRGLGYTL 225


>gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 242

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 7/113 (6%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFSDGRDPEVQGEVFP 148
           G DD V KP    E++AR+ AI RR    +  A++  +R     +  D  +    G    
Sbjct: 103 GGDDYVTKPFSLEEVVARIRAILRR-TAPDEGADSSVLRYADLELDDDTHEVRRAGHPVE 161

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L   E ++L YLM N  + ++K+QI   ++  +D   + N+VES+IS LR+K+
Sbjct: 162 LSPTEFKLLRYLMLNPQRVLSKSQILDHVWQ-YDWGGDANIVESYISYLRRKI 213


>gi|228914576|ref|ZP_04078185.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844895|gb|EEM89937.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 71  LRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 131 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 190 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 225


>gi|229014283|ref|ZP_04171402.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228746883|gb|EEL96767.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKTTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  N       + +F D     V+  G+   L +RE  +L +L+ N+   +++  + + +
Sbjct: 122 IQQNETNFFQFKDLFVDASSNIVKKGGKNLTLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G ++  V  NVV+ +I  +RKKL+
Sbjct: 182 WG-YNVVVNPNVVDLYIGYVRKKLK 205


>gi|229169569|ref|ZP_04297273.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613959|gb|EEK71080.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 242

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 13/186 (6%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+  L+    EE L+   + DV  I   ++      + +   +R  +++P+I +S    
Sbjct: 35  EGYEVLQAGDGEEGLEIVRKRDVHLIVLDIMMPKIDGIHMCMKVREIAEMPIIMLSAKTQ 94

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN------NRAETGPIRVFSD 136
               +    +G DD V KP +  E++AR+ +  RR +K+S       N  E G I++   
Sbjct: 95  DMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKMSGASVKDENVFEVGDIKINIA 154

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHIS 195
            R   +  E   L  RE  +LE L  N+G  +   QI+  ++   ++A + +N V  HI 
Sbjct: 155 TRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIYERVWK--EQAFQSDNTVMVHIR 212

Query: 196 KLRKKL 201
           K+R+K+
Sbjct: 213 KIREKI 218


>gi|167562371|ref|ZP_02355287.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis EO147]
 gi|167574332|ref|ZP_02367206.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis C6786]
          Length = 233

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 76  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R +    RV +     E++ ++ P    E R+L + M +  +  ++TQ+   ++G  D
Sbjct: 136 GLRLDPATHRVAAHAEGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 190

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 191 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|218906288|ref|YP_002454122.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228948819|ref|ZP_04111095.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|218539282|gb|ACK91680.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228810876|gb|EEM57221.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 223

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I +S   +    +   + G DD + KP +   ++A++ A+ RR   S  
Sbjct: 64  RKIREVSKVPIIFLSSRDNPMDMVMAMNMGGDDFMQKPFYTDVLVAKIQALMRR-TYSYT 122

Query: 125 RAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ET  +    V  + +  EV    ++  L + E +IL+ LM N G  V++  I   ++ 
Sbjct: 123 QTETNVVEYEGVVLNLQSGEVTYHNQILELTKNEFKILQILMQNIGSIVSRDNIMRKLWE 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  V++N +  +++++RKKL      + + +K+  GY I
Sbjct: 183 -NESFVDDNTLTVNVARVRKKLAELGKEEFIHTKKGQGYII 222


>gi|121608267|ref|YP_996074.1| two component transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121552907|gb|ABM57056.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 238

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 8/151 (5%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+  L L R  RA S+   +P++ ++        +   D+G DD + KP   +E+LAR+ 
Sbjct: 67  GQSGLSLARKWRADSRTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 126

Query: 114 AIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR      ++    G +R+ +       QG+   +   E ++L +LM +  +  +++
Sbjct: 127 AVLRRRAPEQLSDSVHIGELRLDAATYRVTFQGQPLKVGPTEFKLLHFLMRHTERVHSRS 186

Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKL 201
           Q+   ++G  D   +EE  V+ H+ +LR+ L
Sbjct: 187 QLLDKVWG--DHVYIEERTVDVHVKRLREAL 215


>gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi]
          Length = 242

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN----RAETG 129
           P++ ++   +++  +     G DD V KP    E++ R+  I RR   S++    R    
Sbjct: 90  PVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGHSDDKQSARVTFA 149

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +  D R+    GE   L   E  +L Y M N G  ++K +I   ++  +D   E  V
Sbjct: 150 DLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHVWN-YDFGGEVGV 208

Query: 190 VESHISKLRKKL 201
           VES++S LR+K+
Sbjct: 209 VESYVSYLRRKI 220


>gi|24379577|ref|NP_721532.1| putative response regulator; homolog of RumR and ScnR
           [Streptococcus mutans UA159]
 gi|24377523|gb|AAN58838.1|AE014951_9 putative response regulator [Streptococcus mutans UA159]
          Length = 229

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 12/188 (6%)

Query: 22  DGVSLEGFNSL----EFEEWLQSSARE--DVSAIEAFLI-GKGEKVLELPRIIRAHSQVP 74
           + +++ GFN+L      +E L+   +   D++ ++  L  G G +VL   R IR  S +P
Sbjct: 23  ESLNIAGFNNLTGVQSKKEALEQLGKRSFDLAILDIMLPDGSGFEVL---REIRKTSTIP 79

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134
           ++ +S    ++     F+ G DD + KP   +E+  R+ +I +R     +     P    
Sbjct: 80  VLFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQV 139

Query: 135 SDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
           +  +    +GE+   L  +E  IL+ L  N+ + V   Q+   ++GL  +   EN + +H
Sbjct: 140 NFSQALITKGELEIQLTAKEYSILKVLYNNQNRIVTFDQLLEKVWGLQYQGY-ENTMMAH 198

Query: 194 ISKLRKKL 201
           I K+R+K+
Sbjct: 199 IRKIRQKI 206


>gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 231

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 9/147 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173
              +   E+  +  FSD     V  EV        L R E  +LE L+ N  + + +++I
Sbjct: 122 SPVDGDGESAAM-TFSDLTLDPVTREVTRGNRSISLTRTEFSLLEMLITNPRRVLTRSRI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200
              ++G FD     N +E ++  LR+K
Sbjct: 181 LEEVWG-FDFPTSGNALEVYVGYLRRK 206


>gi|291618320|ref|YP_003521062.1| CpxR [Pantoea ananatis LMG 20103]
 gi|291153350|gb|ADD77934.1| CpxR [Pantoea ananatis LMG 20103]
 gi|327394710|dbj|BAK12132.1| transcriptional regulatory protein CpxR [Pantoea ananatis AJ13355]
          Length = 226

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 22/215 (10%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           D  + L G  GV  +G  S EF   +      D+S  +              R +R  S+
Sbjct: 26  DAQLVLTGSAGV--QGALSGEFSAMILDIMLPDMSGTDVL------------RQVRQQSR 71

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET- 128
           +P+I ++        +   + G DD + KP + RE++AR+ A+ RR   L    ++ E  
Sbjct: 72  LPVIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRVEELAPQQDKKEIL 131

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
             G + + S  R  E +G+ F L   E  +L+ L+ +  + V K ++     G   EA +
Sbjct: 132 QWGELTLNSARRITEWKGKTFDLTASEFNLLDLLLRSPDRVVTKDELSEKGLGRPREAYD 191

Query: 187 ENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            + V+ HIS +R+KL         +++ R +GY I
Sbjct: 192 RS-VDVHISNIRQKLSALTAESITIETVRSIGYRI 225


>gi|256004617|ref|ZP_05429594.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|255991352|gb|EEU01457.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|316941289|gb|ADU75323.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 224

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  S VP+I +S   S    +   + G DD V KP     +LA++ A+ R+     +  
Sbjct: 67  IRDISNVPVIFLSSRDSNMDIVMAVNMGGDDYVTKPFSMDVLLAKMQALIRKAYSYGQFD 126

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               E  G I   +DG      G+   L + E +IL+ LM N+GK V++ +I   ++   
Sbjct: 127 GQIIECNGAILNTNDGT-LTYNGKNIELTKNEFKILQLLMRNKGKIVSRDKIMRVLWE-S 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  + EN +  ++++LR KL +    D + +K+  GY I
Sbjct: 185 EYFISENTLTVNVNRLRSKLEDIGLKDLIVTKKSQGYMI 223


>gi|255975713|ref|ZP_05426299.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256762632|ref|ZP_05503212.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256959112|ref|ZP_05563283.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256964992|ref|ZP_05569163.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257079144|ref|ZP_05573505.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082420|ref|ZP_05576781.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|257085052|ref|ZP_05579413.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257090017|ref|ZP_05584378.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257416223|ref|ZP_05593217.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|294781585|ref|ZP_06746921.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|307269514|ref|ZP_07550853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273088|ref|ZP_07554334.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307277931|ref|ZP_07559015.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307289241|ref|ZP_07569197.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|312901893|ref|ZP_07761158.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903451|ref|ZP_07762631.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|255968585|gb|EET99207.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256683883|gb|EEU23578.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256949608|gb|EEU66240.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256955488|gb|EEU72120.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256987174|gb|EEU74476.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990450|gb|EEU77752.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|256993082|gb|EEU80384.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256998829|gb|EEU85349.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257158051|gb|EEU88011.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|294451281|gb|EFG19747.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|306499950|gb|EFM69311.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306505328|gb|EFM74514.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306510073|gb|EFM79097.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306514134|gb|EFM82710.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310633327|gb|EFQ16610.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311291086|gb|EFQ69642.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315037115|gb|EFT49047.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315150777|gb|EFT94793.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315163855|gb|EFU07872.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315169594|gb|EFU13611.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172458|gb|EFU16475.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315577853|gb|EFU90044.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|327535267|gb|AEA94101.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 236

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 11/118 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LAR+ AI+RRLK +                G IRV     +  V+
Sbjct: 95  GADDYLTKPFSPREVLARMKAIFRRLKPTTTEPLQEDTPKAPLVIGEIRVDEQNYEVFVR 154

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +   L  +E  +L Y M  + + + +  +   I+  +D A +  +V+ HIS LR K+
Sbjct: 155 NQPIELTPKEFELLVYFMKRKDRVINRETLLERIWQ-YDFAGQSRIVDVHISHLRDKI 211


>gi|237714601|ref|ZP_04545082.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262406466|ref|ZP_06083015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294647765|ref|ZP_06725320.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294808589|ref|ZP_06767331.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445370|gb|EEO51161.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262355169|gb|EEZ04260.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292636902|gb|EFF55365.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294444213|gb|EFG12938.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295083997|emb|CBK65520.1| two component transcriptional regulator, winged helix family
           [Bacteroides xylanisolvens XB1A]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           LEL R+ R     Q P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR
Sbjct: 62  LELCRLYRQTFGYQSPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 121

Query: 119 LK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            K V++N      + +  + R  +       L  +E R+LEY M ++G  +++  +   +
Sbjct: 122 NKEVTSNLLTCDNLILDCNTRRAKRGNIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDV 181

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   FD     N+V+ +++ LR K+        + +   LGY ++
Sbjct: 182 WDKNFD--TNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 224


>gi|229135927|ref|ZP_04264689.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228647540|gb|EEL03613.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKTTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  N       + +F D     V+  G+   L +RE  +L +L+ N+   +++  + + +
Sbjct: 122 IQQNETNFFQFKDLFVDASSNIVKKGGKNLTLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G ++  V  NVV+ +I  +RKKL+
Sbjct: 182 WG-YNVVVNPNVVDLYIGYVRKKLK 205


>gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
 gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
          Length = 271

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
             P+I ++        L   + G DD V KP   RE++ARV A+  R       +++   
Sbjct: 117 MTPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLARTMPRTEDSQSSYV 176

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + + +     +V G+  PL  +E  +L +L++N+G  +++ +I   ++  +D   E+
Sbjct: 177 FGDLSIDTASHTVKVAGQEAPLTPKEFDLLVFLVSNKGIALSREKILQKVWN-YDYYGED 235

Query: 188 NVVESHISKLRKKL 201
             V++HI  LR  L
Sbjct: 236 RTVDTHIKMLRGHL 249


>gi|226323795|ref|ZP_03799313.1| hypothetical protein COPCOM_01570 [Coprococcus comes ATCC 27758]
 gi|225207979|gb|EEG90333.1| hypothetical protein COPCOM_01570 [Coprococcus comes ATCC 27758]
          Length = 231

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/228 (19%), Positives = 98/228 (42%), Gaps = 19/228 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++    +   DG   E    LE    L ++ R D+  ++          L
Sbjct: 10  IAVVEDEVYMREELCNMLQKDGYLAEAITELEDAVRLLAALRPDLVILD----------L 59

Query: 62  ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
            LP I        ++  + +P++ ++    ++  L  F  G D+ + KP     +LARV+
Sbjct: 60  NLPEISGFQICQELKNKTAIPVLVLTSRDQVKDELQAFHLGADEYLTKPCRKDRLLARVS 119

Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            I +R +   N  E     +        +      LP+ + ++L  L++     V   Q+
Sbjct: 120 NILKRYEGRTNLIEGPDFLLDQQTYTLYIHNTSVVLPKNQGKLLVALLSGGDALVTTEQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             A++G   E ++EN ++ ++++L+K +        + + R +GY ++
Sbjct: 180 CIALWG-TTEYIDENALQVNLTRLKKTMSGLEMKQRIVAVRGMGYRLE 226


>gi|218508571|ref|ZP_03506449.1| probable two-component response regulator protein [Rhizobium etli
           Brasil 5]
          Length = 216

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 19/151 (12%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA  +Q  ++ ++   + +  +   D G DD + KP    E  ARV  + RR 
Sbjct: 60  LDVLRAMRARQNQAAVLILTARGAPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRR- 118

Query: 120 KVSNNRAET---GPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +  R+ T   G I      R FS G  P        +P RE  +LE L    GK VAK
Sbjct: 119 -QAGLRSATVGFGGISFDLNSRTFSAGSTP------LDIPARELGLLEILFMRAGKVVAK 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             I  ++   FD+ +  N +E ++S+LRK+L
Sbjct: 172 EAIIQSLTA-FDDDISANAIEQYVSRLRKRL 201


>gi|254458509|ref|ZP_05071934.1| two component transcriptional regulator, winged helix family
           [Campylobacterales bacterium GD 1]
 gi|207084817|gb|EDZ62104.1| two component transcriptional regulator, winged helix family
           [Campylobacterales bacterium GD 1]
          Length = 223

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 13/165 (7%)

Query: 61  LELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE  R+I   +  VP I IS Y  +Q   D +D+G +D + KP + +E+  RV  +  + 
Sbjct: 60  LECLRVISEKYPTVPKIIISAYNDMQHISDAYDNGCNDYLKKPFNLKELQIRVEYLAHKN 119

Query: 120 KVSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + S    E   + +      D EV      G +  L +RE  ++   ++N G+ +    I
Sbjct: 120 ENSIIEVEASLLHLSQHYVFDKEVNVLYYDGIIQALTKREHALVLLFISNLGQIMTDESI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            S I+    E VE + + S +++LR KL+ +L    + S R  GY
Sbjct: 180 QSCIWD--GEYVEPSTIRSLVNRLRAKLKEEL----IQSIRGFGY 218


>gi|126640806|ref|YP_001083790.1| NarL family two-component response regulator [Acinetobacter
           baumannii ATCC 17978]
          Length = 179

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L + R +R H   P++ ++        +   + G DD V KP+  R +LAR+ A+ 
Sbjct: 4   GADGLTVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALL 63

Query: 117 RRLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR   +       R E   + + + GR   + GE+      E  +L  L +N G+ +++ 
Sbjct: 64  RRTDKTVEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSRE 123

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
            IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 124 DIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 162


>gi|326794087|ref|YP_004311907.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326544851|gb|ADZ90071.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 227

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 10/149 (6%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +RA  ++VP+I ++        L+  + G DD V KP    E++ARV AI RR+K
Sbjct: 62  EICHQLRAMDNEVPIIMLTARVDESDRLEGLNIGADDYVCKPFLPNEVVARVNAILRRIK 121

Query: 121 VSNNRAETGPIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            S   A   P  + S      D E     V G    L   E ++L  +M  R KR+   +
Sbjct: 122 KSQASASNEPTTLISYRNITIDIEKYLCFVSGVEIELTSVELKLLHTMMT-RPKRIFSRE 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   +    D  V +  ++SH+  LRKKL
Sbjct: 181 VLMDMCYDDDRVVNDRTIDSHMRNLRKKL 209


>gi|291523001|emb|CBK81294.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 233

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 30/213 (14%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGI 78
            +L+  E+   SA+   SA+   L    + VL           E+ R IR+ S +P+I I
Sbjct: 21  TTLKTHEYRYLSAQNGASAVLEALSHNPDIVLLDLGLPDMDGVEIIRKIRSWSNMPIIVI 80

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDG 137
           S        +   D+G DD + KP    E+LAR+    RRL +   + A+  PI  F++G
Sbjct: 81  SARTEDSDKIGALDAGADDYLTKPFSVDELLARLRVTQRRLALMKADTAQETPI--FTNG 138

Query: 138 R--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
                       + G    L   E ++L  L  N GK +  T I   I+G    +  EN 
Sbjct: 139 ALKIDYAAGCAYIDGAELHLTPIEYKLLCLLSKNVGKVLTHTYITQQIWG----SSWEND 194

Query: 190 VES---HISKLRKKLRN-KLGFDPVDSKRFLGY 218
           + S    ++ LRKKL N K G   + +   +GY
Sbjct: 195 IASLRVFMATLRKKLENGKDGQQYIQTHIGIGY 227


>gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 234

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 11/171 (6%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R IR    Q P++ ++   +    +   + G DD V KP   REI+AR+ AI RR 
Sbjct: 61  LDVTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRS 120

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L  + N+   G I +  +       G    L  +E  +L Y     GK +++ 
Sbjct: 121 QSQPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRD 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
            + + ++G FD   E  +V+  +S LR K+       D + + R  GY ++
Sbjct: 181 ALLNGVWG-FDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQME 230


>gi|229108261|ref|ZP_04237882.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228675174|gb|EEL30397.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N   +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 119 TNEHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220


>gi|262201296|ref|YP_003272504.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084643|gb|ACY20611.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 223

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 18/217 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           RALV DG+      DGV  +G        W  +    DV  ++  L G    V+   R +
Sbjct: 18  RALVSDGWAVTVAHDGV--DGL-------WKATEGSHDVIVLDIMLPGHNGYVV--VREL 66

Query: 68  RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           RA     P++ ++         +  D+G DD + KP     + A + A+ RR ++    R
Sbjct: 67  RARGIWTPVVMLTAKDGEYDQAEALDAGADDYLVKPFSVVVLKAHLRALLRRGVRERPAR 126

Query: 126 AETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183
              G + V         +G+    L  RE  +LEYL+ N    V+K +I  +++   FD 
Sbjct: 127 LVAGDL-VVDPAEHTVTRGQTPITLTPREFAVLEYLIRNADTVVSKCEIVRSVWDENFDG 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + N+VE ++  LRK++    G   +++ R  GY +
Sbjct: 186 --DANIVEVYVGYLRKRIDTPFGKRSIETVRGAGYRL 220


>gi|167844478|ref|ZP_02469986.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei B7210]
          Length = 240

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 63  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 121

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q
Sbjct: 122 -----GAGGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQ 176

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 177 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 222


>gi|167033487|ref|YP_001668718.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859975|gb|ABY98382.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 233

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R++R  SQ +P++ ++        +   + G DD V KP   R +LARV  + RR 
Sbjct: 61  LQLCRLLRQESQSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS 120

Query: 120 KVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            V+  R +      G +R+    R    +GE   L   E  +L  L  N G+ + + +I 
Sbjct: 121 SVNEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
             + G+     + + V+  ISKLR+K  +  G       V  K +L   ++W
Sbjct: 181 QQLRGIEFNGTDRS-VDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEW 231


>gi|126656902|ref|ZP_01728080.1| two-component system response regulator [Cyanothece sp. CCY0110]
 gi|126621740|gb|EAZ92449.1| two-component system response regulator [Cyanothece sp. CCY0110]
          Length = 223

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 102/208 (49%), Gaps = 14/208 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L+DD A + +    +   +G  ++  ++ +  +E  LQ++   D+  ++  L GK   
Sbjct: 3   ILLVDDEAELTEPLYHVLSHEGYDVDVADNGQKGYELALQNNY--DLLILDWMLPGK--P 58

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + + +R+  Q  P++ ++   +L   +   D+G DD + KP   RE++ARV A+ RR
Sbjct: 59  GLSICQELRSQGQNTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRR 118

Query: 119 LKVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              S     TG +++     DPE      QG +  L  +E ++L Y M +  + +   QI
Sbjct: 119 FP-SLEGTGTGRLKIGDLELDPENQVAYRQGRMVSLSDKEVKLLTYFMQHPHQLLTHKQI 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  ++    E    NV+ + I  LR+K+
Sbjct: 178 YQFLWE-EPEKPNSNVLAALIRLLRRKI 204


>gi|158319282|ref|YP_001511789.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139481|gb|ABW17793.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I +S        +    +G DD V KP +  E++ARV +  RR    NN A
Sbjct: 69  IREEKNMPIIMLSAKAEDMDKIFGLTTGADDYVTKPFNPLELIARVKSQIRRYTKLNNNA 128

Query: 127 --------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +       ++ GE   L  RE  ILE L  NRG   +  +I+  ++
Sbjct: 129 AAATGEEIEIDDLVINVSTHQVKINGEEIKLTPREFDILELLARNRGMVFSMERIYQKVW 188

Query: 179 G--LFDEAVEENVVESHISKLRKKL 201
               FD     N V  H+ K+R+K+
Sbjct: 189 KEDFFDSP---NTVMVHVRKIREKI 210


>gi|89899315|ref|YP_521786.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344052|gb|ABD68255.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 227

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D G DD V KP+   E+ AR+ ++ RR      +    G + +    R   +  E   L
Sbjct: 91  LDLGADDYVVKPVDLHELGARLRSLVRRAHGQMQDVLRCGAVLLEPSARRVSLNDEPVAL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             RE  +L  LM N  + +++ Q+   +Y    E VE N +E HI  LR+KL+  L    
Sbjct: 151 STREFDLLHVLMLNADRVLSREQLEQQLYSWGYE-VESNAIEVHIHHLRRKLQPDL---- 205

Query: 210 VDSKRFLGYSI 220
           + + R +GY++
Sbjct: 206 IQTVRGIGYTV 216


>gi|30018835|ref|NP_830466.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296501409|ref|YP_003663109.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29894377|gb|AAP07667.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296322461|gb|ADH05389.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N   +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 119 TNEHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220


>gi|50083946|ref|YP_045456.1| two-component regulatory system response regulator [Acinetobacter
           sp. ADP1]
 gi|169634184|ref|YP_001707920.1| OmpR family response regulator [Acinetobacter baumannii SDF]
 gi|169797062|ref|YP_001714855.1| OmpR family response regulator [Acinetobacter baumannii AYE]
 gi|184157025|ref|YP_001845364.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213156532|ref|YP_002318193.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215484523|ref|YP_002326758.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB307-0294]
 gi|239501298|ref|ZP_04660608.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB900]
 gi|260551037|ref|ZP_05825242.1| two-component system response regulatory system response regulator
           [Acinetobacter sp. RUH2624]
 gi|260555646|ref|ZP_05827866.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|293609143|ref|ZP_06691446.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|301345629|ref|ZP_07226370.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB056]
 gi|301512784|ref|ZP_07238021.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB058]
 gi|301596295|ref|ZP_07241303.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB059]
 gi|332852151|ref|ZP_08433978.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6013150]
 gi|332867550|ref|ZP_08437703.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6013113]
 gi|332872600|ref|ZP_08440568.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6014059]
 gi|49529922|emb|CAG67634.1| putative response regulator (activator) in two-component regulatory
           system (OmpR family) [Acinetobacter sp. ADP1]
 gi|61224854|gb|AAX40744.1| BfmR [Acinetobacter baumannii]
 gi|169149989|emb|CAM87883.1| putative response regulator (activator) in two-component regulatory
           system (OmpR family) [Acinetobacter baumannii AYE]
 gi|169152976|emb|CAP02024.1| putative response regulator (activator) in two-component regulatory
           system (OmpR family) [Acinetobacter baumannii]
 gi|183208619|gb|ACC56017.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193076532|gb|ABO11188.2| two-component regulatory activator (OmpR family) [Acinetobacter
           baumannii ATCC 17978]
 gi|213055692|gb|ACJ40594.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213988835|gb|ACJ59134.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB307-0294]
 gi|260405985|gb|EEW99472.1| two-component system response regulatory system response regulator
           [Acinetobacter sp. RUH2624]
 gi|260410557|gb|EEX03855.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|292829716|gb|EFF88078.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|322506924|gb|ADX02378.1| putative response regulator (activator) in two-component regulatory
           system (OmpR family) [Acinetobacter baumannii 1656-2]
 gi|323516791|gb|ADX91172.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|325121077|gb|ADY80600.1| response regulator in two-component regulatory system with RstB
           [Acinetobacter calcoaceticus PHEA-2]
 gi|332729523|gb|EGJ60862.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6013150]
 gi|332733967|gb|EGJ65112.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6013113]
 gi|332739129|gb|EGJ69988.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6014059]
          Length = 238

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 12/180 (6%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           S + D+  ++  L   G   L + R +R H   P++ ++        +   + G DD V 
Sbjct: 49  SEQPDLVVLDVML--PGADGLTVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVA 106

Query: 101 KPIHHREILARVAAIYRRLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           KP+  R +LAR+ A+ RR   +       R E   + + + GR   + GE+      E  
Sbjct: 107 KPVQPRVLLARIRALLRRTDKTVEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYD 166

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +L  L +N G+ +++  IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 167 LLWLLASNAGRILSREDIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 221


>gi|120555233|ref|YP_959584.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325082|gb|ABM19397.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 244

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 86/174 (49%), Gaps = 16/174 (9%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L + R +R     P+I ++        +   + G DD + KP+  R +LAR+
Sbjct: 62  LMLPGEDGLSICRRVRPFFNGPIIMLTARTDDLDQVLGLEMGADDYIGKPVQPRVLLARI 121

Query: 113 AAIYRRLKVS--NNRAETG--PIRV-FSD------GRDPEVQGEVFPLPRRERRILEYLM 161
            A+ RR++ S  + +  +G  P+R+ F+D       R+  +  E   L   E  +L  L 
Sbjct: 122 RAMLRRVETSPVSGQETSGEEPVRLQFNDLVVDRSMREAWLSDESIDLTSAEFDLLWLLA 181

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +N G+ +++ +IF+A+ G     +E +  +  I     ++R K+G DP+  +R 
Sbjct: 182 SNAGRVLSREEIFTALRG-----IEYDGQDRSIDVRVSRIRPKIGDDPIHPRRI 230


>gi|297183269|gb|ADI19407.1| response regulators consisting of a chey-like receiver domain and a
           winged-helix DNA-binding domain-protein [uncultured
           Pseudomonadales bacterium HF0500_12O04]
          Length = 222

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 21/155 (13%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVSN 123
            P++ ++   S    ++   +G DD + KP H  E+L RV A+ RR         LK + 
Sbjct: 73  TPVLILTARSSWSERIEGLKAGADDYLTKPFHPEELLLRVQALLRRSHGQANQPLLKCAG 132

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              +     V +DG   ++    F       R+L Y M +  + ++K+ +   +Y    E
Sbjct: 133 LHLDEARQCVINDGAQVQLTAAEF-------RLLRYFMLHPQQILSKSHLAEHLYDGETE 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + NV+E H++ LR+    KLG   ++++R  GY
Sbjct: 186 R-DSNVLEVHVNHLRR----KLGRSVIETRRGQGY 215


>gi|291531321|emb|CBK96906.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           70/3]
          Length = 227

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 87/168 (51%), Gaps = 15/168 (8%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +R+  +  P++ ++    ++  +   D G DD + KP    E+L+RV A+ RR 
Sbjct: 60  LEVLKTLRSEGNTTPILLLTAKAEVEDRIAGLDMGADDYLPKPFVMGELLSRVRAMLRR- 118

Query: 120 KVSNNRAETGPIRVFSDG----RDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +R  T  I  F +        E++G  +   LP+ E +++E LM N+G  ++   I
Sbjct: 119 ---KDRF-TPDIMTFGNVSLNLSSCELKGPLQSIVLPKIEYKLMELLMLNKGIYLSTDDI 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++G ++   E   V  +IS +RK+L   +G D  + +KR +GY++
Sbjct: 175 LVKVWG-YESDAESGAVWVYISYVRKRL-AAIGADIEIRAKRSVGYTL 220


>gi|268609739|ref|ZP_06143466.1| DNA-binding response regulator [Ruminococcus flavefaciens FD-1]
          Length = 223

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 6/160 (3%)

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E    +R  +  +P++ ++    +++    +  G+DD + KP++  E+L ++ AI RR  
Sbjct: 62  EFAETVRGLNKDIPILFMTAKDDMRSMQRGYKLGIDDYLVKPVNLEELLLKIGAILRRAN 121

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S N+  T G + +  D +     GE   L  RE  +L  L++N  K   ++Q+ +  + 
Sbjct: 122 ISANKLLTIGRLTMNEDEQSCIYDGEEITLTVREFNLLFKLLSNPKKTFTRSQLMNEFWD 181

Query: 180 LFDEAVEE-NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  EA      V+ ++ KLR+K  N   F+ V +   LGY
Sbjct: 182 I--EATSGLRSVDVYMRKLREKFENCDEFEIV-TVHGLGY 218


>gi|262373379|ref|ZP_06066658.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262313404|gb|EEY94489.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 238

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 12/180 (6%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           S + D+  ++  L   G   L + R +R H   P++ ++        +   + G DD V 
Sbjct: 49  SEQPDLVVLDVML--PGADGLTVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVA 106

Query: 101 KPIHHREILARVAAIYRRLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           KP+  R +LAR+ A+ RR   +       R E   + + + GR   + GE+      E  
Sbjct: 107 KPVQPRVLLARIRALLRRTDKTVEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYD 166

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +L  L +N G+ +++  IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 167 LLWLLASNAGRILSREDIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 221


>gi|259502057|ref|ZP_05744959.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|259169970|gb|EEW54465.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
          Length = 221

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR    +++      +R+ S  +  E    +  L
Sbjct: 91  LDAGADDYLTKPFSLKELLARLRSLERRTTSYDDQELAFADLRLDSGEQVLESHNSI-SL 149

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            R E R+L+YL+ N GK +A   +   ++    +A EE+V   +IS LR KL++
Sbjct: 150 SREETRMLQYLIHNAGKELAAADLLQRVWAGDQDADEEDVW-INISYLRHKLQS 202


>gi|269836941|ref|YP_003319169.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786204|gb|ACZ38347.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 240

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 10/150 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R     P++ ++   +    +   + G DD + KP   RE+ ARV+AI RR++
Sbjct: 64  LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123

Query: 121 VSN--NRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +    +R E G  R+           R+   +G+   L  +E  +L  L AN G+  ++ 
Sbjct: 124 MMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +   ++G  D    +  V++HI +LRKKL
Sbjct: 184 YLLHRVWG-EDYVGVDRTVDTHILRLRKKL 212


>gi|228990093|ref|ZP_04150065.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228769621|gb|EEM18212.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 232

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 16/158 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAQYHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLRRFLM 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               K  +N++  E G + ++ + R   V  E   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKAEDNKSVLEIGGVVIYPEQRTVSVYEEQIELTPKEFDIL-YLLASHPKKVYSVEN 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-----RNKL 205
           IF  ++   D     N V  HI  LRKKL     +NKL
Sbjct: 183 IFQQVWA-EDYYEGRNTVMVHIRTLRKKLGEDKRKNKL 219


>gi|229019758|ref|ZP_04176562.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1273]
 gi|229025985|ref|ZP_04182372.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1272]
 gi|228735316|gb|EEL85924.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1272]
 gi|228741540|gb|EEL91736.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1273]
          Length = 241

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 73  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 132

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S   ++   I++     DP     E +G    L  +E  IL+  + N+ +   K QI+
Sbjct: 133 KYSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIY 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 193 TLVWN-EEYYGDDNVINVHMRRLREKIES 220


>gi|158339459|ref|YP_001520636.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309700|gb|ABW31317.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 222

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 15/214 (7%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQ 72
           IA F + G+   G+ +   E   ++ +       E  ++     G   LE+   +R    
Sbjct: 13  IASFIEKGLKSHGYATTTVENAHEALSFALSDGFELLILDLGLPGRDGLEVLADLRGQGS 72

Query: 73  V-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           V P+I ++    +Q  +   + G DD + KP    E+LARV    R + +     ET  +
Sbjct: 73  VLPVIILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRLRTVSIGTP-PETMTM 131

Query: 132 RVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
              +       R  +V  +   LP RE  + E    + G+ +++ Q+   ++G +D    
Sbjct: 132 TAHNVVLDLRTRKAKVDDQWIELPAREFILAETFFRHPGQVLSRQQLLDRVWG-YDYDPG 190

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N+V+ ++  LRKKL N L    +++ R +GY +
Sbjct: 191 SNIVDVYVGYLRKKLGNSL----IETVRGVGYRL 220


>gi|34557806|ref|NP_907621.1| putative two-component regulator [Wolinella succinogenes DSM 1740]
 gi|34483524|emb|CAE10521.1| PUTATIVE TWO-COMPONENT REGULATOR [Wolinella succinogenes]
          Length = 216

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL + +R    + P I I+   S +     F++G  D + KP    E+ AR+  +    
Sbjct: 60  LELLKNLRTLGFKTPAIFITSQNSSKDLKAGFEAGAHDYIRKPFDLDELDARIQNLSNLF 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +     E  P   F   R+  + QG+ F L ++E  I    + NRGK +   +I + I+
Sbjct: 120 GLGEEE-EVAPGITFLANRNLLILQGKSFSLRKKEAEIFSLFLQNRGKTLTPAEIIANIW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++E    + + SHI  LRK L ++L    + + R LGY
Sbjct: 179 R-YEETPTPSTLRSHIKSLRKLLGDEL----IQNIRGLGY 213


>gi|325663166|ref|ZP_08151616.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470620|gb|EGC73850.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 241

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 13/168 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 SNNR---AETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  AE G       I +          G+V  +P +E  +L +L ++  +   + Q
Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   I+G ++   +   V+ HI +LR+K     G   ++S+  +GY +
Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREK---NQGPSDMESRHRVGYRV 228


>gi|319442731|ref|ZP_07991887.1| two-component system response regulator TcsR5 [Corynebacterium
           variabile DSM 44702]
          Length = 231

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 11/172 (6%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R   S+V ++ +S    +   +   D+G DD + KP    E+LARV ++YRR 
Sbjct: 60  LEILRSLRGSGSEVLVLMLSQKSDVADRVAGLDAGADDYLTKPFALEELLARVRSLYRRS 119

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKT 171
           +   +    ++ P+       +PE + EV        L R E  +LE L+ N  K +++ 
Sbjct: 120 RRTAAAVAKDSKPLSFLDLTLNPETR-EVTRDERRISLTRTEFALLELLLRNARKVLSRN 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            I   ++G +D     N +E +I  LR+K   +     + + R +GY +  N
Sbjct: 179 TILEEVWG-YDFPTSGNALEVYIGYLRRKTEAEGEDRLIHTVRGVGYVLREN 229


>gi|303238185|ref|ZP_07324721.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302594231|gb|EFL63943.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 21/158 (13%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRR 118
           E+ + +R   ++P+I +S        +   D G DD + KP    E+ ARV +    Y R
Sbjct: 62  EIIKAVRNRFEIPIIVVSAKSEDIDKIRGLDYGADDYLTKPFSPAELAARVKSHINRYER 121

Query: 119 LKVSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           LK  N  +E           G  +VF +GR  E+Q     L  +E  +L +L +N     
Sbjct: 122 LKGKNTCSEVINHKGLEINAGSHKVFVNGR--EIQ-----LTTKEYELLFFLASNPNIVF 174

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
            K  IF+ I+G  D   +   V  HI K+RKK+    G
Sbjct: 175 TKEHIFNTIWG-DDYYGDTATVPVHIQKIRKKIEKDAG 211


>gi|293376504|ref|ZP_06622732.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292644730|gb|EFF62812.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 233

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 18/153 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R +R   + P+I +S       TL   + G DD + KP    E++ARV A  RR K
Sbjct: 62  LELCRRVRDQLKAPIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRREK 121

Query: 121 VSNNRAETGPIRVFSD-----------GRDPEVQGEV-FPLPRRERRILEYLMANRGKRV 168
               R +   I    D            R    + EV   L  RE ++ +Y + N G+ +
Sbjct: 122 ----RHQMNAIESLQDVLPFDHFKLYPNRYEVFKDEVNIDLSPREFQLFQYFVENSGRVL 177

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ QIF AI+G  +   +   V  +I  LR+KL
Sbjct: 178 SREQIFDAIWG--ENYGDIGTVAVNIKNLRQKL 208


>gi|229114252|ref|ZP_04243673.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669272|gb|EEL24693.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N   +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 119 TNEHKQIQYHGIVWDETKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220


>gi|227879006|ref|ZP_03996902.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256844225|ref|ZP_05549711.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849375|ref|ZP_05554808.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|262047880|ref|ZP_06020828.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380062|ref|ZP_06626158.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295691935|ref|YP_003600545.1| response regulator [Lactobacillus crispatus ST1]
 gi|312977021|ref|ZP_07788770.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
 gi|227861395|gb|EEJ69018.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256613303|gb|EEU18506.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256714151|gb|EEU29139.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|260571824|gb|EEX28397.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290923376|gb|EFE00283.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295030041|emb|CBL49520.1| Response regulator [Lactobacillus crispatus ST1]
 gi|310896349|gb|EFQ45414.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
          Length = 238

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121

Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +           ++   + G + +  D    E  G+   L  RE  +L YL  + G+ + 
Sbjct: 122 IVKKAEAASQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+  N +    + ++R +GY +
Sbjct: 182 REHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYV 232


>gi|225388517|ref|ZP_03758241.1| hypothetical protein CLOSTASPAR_02253 [Clostridium asparagiforme
           DSM 15981]
 gi|225045448|gb|EEG55694.1| hypothetical protein CLOSTASPAR_02253 [Clostridium asparagiforme
           DSM 15981]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 9/164 (5%)

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +L R +R    ++P+I ++        +  F++G DD ++KP     + AR+ A+ +R  
Sbjct: 63  QLCRWVRGRWKELPVIFLTVRGESGDIVRGFENGADDYISKPFDLAVLHARIRALLKRAG 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR--ERRILEYLMANRGKRVAKTQIFSAI 177
           K    R   GP+ +  D    +V  E  PLP    E R+LE L+ N+ + V +  +  +I
Sbjct: 123 KGETARLSCGPLSL--DTGTVKVYWEDQPLPVSPVEYRLLEILIQNQNRTVTRQSLLESI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +      V +N +   + +LR+KL      D + + R  GY ++
Sbjct: 181 WDSSGNYVNDNTLTVAMKRLREKLPQP---DCIRTVRSFGYCME 221


>gi|225022854|ref|ZP_03712046.1| hypothetical protein CORMATOL_02900 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682198|ref|ZP_07405002.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|224944378|gb|EEG25587.1| hypothetical protein CORMATOL_02900 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658671|gb|EFM48174.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 222

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 32/179 (17%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  +LE  R +   + +P+I ++   +L+  L   + G +D + KP    E+LARV    
Sbjct: 60  GTDILEQLRSL--GTTLPIIVLTARTALEDRLRTLEGGANDYMPKPFQFAELLARV---- 113

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVF--------------PLPRRERRILEYLMA 162
            RL++    AE+ P    ++       G V                L RRE  +LE LM 
Sbjct: 114 -RLRL----AESNPDMNGANSTQIHHNGMVLDLRAHRVLIDDKWRDLSRRELGLLETLMR 168

Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  + ++++Q+ S ++G+ FD     NVV+ +I  LRK    K+G D V++ R  GY +
Sbjct: 169 HPRQILSRSQLLSQVWGMDFDPG--SNVVDVYIRSLRK----KIGADKVETVRGSGYRL 221


>gi|209965075|ref|YP_002297990.1| TorCAD operon transcriptional regulatory protein TorR
           [Rhodospirillum centenum SW]
 gi|209958541|gb|ACI99177.1| TorCAD operon transcriptional regulatory protein TorR
           [Rhodospirillum centenum SW]
          Length = 241

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 28/234 (11%)

Query: 11  VKDGYIALFGDDGVSLEGFNSLEFEE--WLQSSAREDVSAIEAFLIGKGEKVL---ELP- 64
           + D  + L  +D  +     +  F E  +L + A       EA L    + VL   ELP 
Sbjct: 4   IADAPLVLIVEDEPATRALLAAYFHEAGFLIAEAENGRQTREALLRQPPDLVLLDIELPD 63

Query: 65  -------RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
                  R IR  S V +I +++  +    +   ++G DD V KP + RE+LAR   + R
Sbjct: 64  EDGFSIARSIREISNVGIIIVTNRANEDDRVFGLETGGDDYVTKPPNPRELLARARNLLR 123

Query: 118 RLKVSNNRAETGPIRVFSDGR---------DPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R   S  R   G +R F             DPE  G+   + R E  +L  L+ + G+ V
Sbjct: 124 RTHPSKMRRAEGTVRRFGGWTMDLARRRLIDPE--GQEIRVTRGEFELLALLVRSGGRVV 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            + Q+  A+ G  D    +  ++  +S+LR+K+ +  G  P  + +++ LGY +
Sbjct: 182 TRDQLIDAVSG-TDRNPNDRTIDVLVSRLRRKMCDT-GVSPRLILTEKGLGYRL 233


>gi|196233947|ref|ZP_03132784.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196221996|gb|EDY16529.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 223

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 96/223 (43%), Gaps = 18/223 (8%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGKGEKVLELPRII 67
           D +I L   D +  EG+   +  +  Q+       R D+  ++  L GK     +L R +
Sbjct: 4   DAHIRLGLCDALRGEGYEVSDCRDGAQALPIIRQRRPDLVVLDIMLPGKSG--FDLCREL 61

Query: 68  RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           RA     P++ +S        +   + G DD V KP   RE+LARV A+ RR       A
Sbjct: 62  RAEKNCTPILMLSAKGQEVDKVVGLELGADDYVTKPFSLRELLARVQALLRRATPGAVAA 121

Query: 127 ET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +       G + V           E F L  RE ++L  L   RG  V++  I + ++G+
Sbjct: 122 DVPEEISFGKVHVDCRALRGTRGKEAFELTPRELKVLAVLHRERGNAVSRETILTEVWGI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
            D       ++  + KLR+K+    G +P  + +   LGY +D
Sbjct: 182 -DYYGTTRTLDQLVVKLRQKIEATPG-EPQHLLTVHGLGYRLD 222


>gi|126662999|ref|ZP_01733997.1| two-component response regulator [Flavobacteria bacterium BAL38]
 gi|126624657|gb|EAZ95347.1| two-component response regulator [Flavobacteria bacterium BAL38]
          Length = 229

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 31/187 (16%)

Query: 62  ELPRIIRAHSQVPLIG-------ISDYPSLQTTL---------DF-----FDSGVDDVVN 100
           ELP++I     +P +        I   P LQ T+         D+     FD+G DD + 
Sbjct: 48  ELPQLIIMDVMMPEMDGMEACEIIRKTPELQDTVITFLTARSEDYSQVAGFDAGADDYIA 107

Query: 101 KPIHHREILARVAAIYRRLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERR 155
           KPI  + ++++V A+ RR K S   + +     G I +  +      +G    LPR+E  
Sbjct: 108 KPIKPKVLVSKVQALLRRFKDSEGSSSSTTLNVGNIEINREEYKIVKEGVEIILPRKEFE 167

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +   L    GK   + +I   ++G  +  V    ++ HI    +KLR K+G D   + + 
Sbjct: 168 LFYLLATKPGKVFTREEILDKVWG-NEVVVGGRTIDVHI----RKLREKIGDDFFKTIKG 222

Query: 216 LGYSIDW 222
           +GY I++
Sbjct: 223 VGYKIEF 229


>gi|187930690|ref|YP_001901177.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|309780316|ref|ZP_07675067.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA]
 gi|187727580|gb|ACD28745.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|308921019|gb|EFP66665.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA]
          Length = 221

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 7/150 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP++ ++   ++   +   D G DD + KP    E+LAR+ A+ RR   + +   T  + 
Sbjct: 73  VPVLILTARDAVDERVRGLDGGADDYILKPFEMVELLARMRAVLRRKGGAASPVLTNGVL 132

Query: 133 VFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
                      G+  P  L  RE  +L+ LM   G  +++T++   IYG   E V  N V
Sbjct: 133 TLDPAAHEARMGDAEPVRLSAREFALLQALMLRPGAILSRTELEERIYGWGHE-VASNAV 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E  I  LRK    KLG   + + R +G+ +
Sbjct: 192 EFLIHALRK----KLGAQAIKNVRGVGWMV 217


>gi|160879819|ref|YP_001558787.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428485|gb|ABX42048.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 219

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 3/130 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P+I I+    +   +     G DD ++KP    E+LARV A+ RR   S  + E   + 
Sbjct: 72  TPVIFITAKSDINDRIRGLRLGADDYISKPFQVGELLARVEAVIRRFGKSERKIELYGVT 131

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAVEENVVE 191
           +  + R+    G++  L  +E  +L  L+ N+   + ++ ++  ++ G F    E   ++
Sbjct: 132 IDLNSREVRKDGQLIELTVKEFELLIQLIQNKNVALRRSWLYERVWEGEF--TGETRTLD 189

Query: 192 SHISKLRKKL 201
           +HI +LRKKL
Sbjct: 190 THIQRLRKKL 199


>gi|296271597|ref|YP_003654228.1| winged helix family two component transcriptional regulator
           [Arcobacter nitrofigilis DSM 7299]
 gi|296095772|gb|ADG91722.1| two component transcriptional regulator, winged helix family
           [Arcobacter nitrofigilis DSM 7299]
          Length = 229

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L + IR  S+VP++ ++     +  +   D G DD + KP    E+LAR+ A  RR   
Sbjct: 63  DLIKQIREISKVPILVLTARHDEKEIVAALDVGADDYITKPFSVNELLARIRANLRRNIA 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++ NN      + +    R  + + EV  L   E  +L+Y M N  K +   QI + +
Sbjct: 123 KEEIDNNFI-CNDLELDISSRTIKFKKEVLKLTPIEYELLKYFMINANKTLTHKQILNEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G+     E   + ++++ LRKK+
Sbjct: 182 WGV-GYQTEMQYLRTYVNTLRKKI 204


>gi|261368149|ref|ZP_05981032.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282569913|gb|EFB75448.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 92/197 (46%), Gaps = 19/197 (9%)

Query: 10  LVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRII 67
           LVK+GY + +  D   +L  F+ L            D+  ++  + +  G    E+ R I
Sbjct: 23  LVKEGYNVTMVHDGNAALTEFDKL----------HPDLVLLDVMMPVMDG---WEVCRKI 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA 126
           RA    P+I ++        +   + G DD + KP   +E+ AR+ A+ RR  K  +N+ 
Sbjct: 70  RAKDNTPIIMLTAKGETYDKVLGLELGADDYIVKPFDAKEVTARIKAVLRRSTKEEDNKG 129

Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             +   + +  +  + +V+G+V   P +E  +L  L  +  +   + Q+   ++G F+  
Sbjct: 130 VYDFDNLHLDMNRYELKVKGKVVEAPPKELELLACLAGHPNRVYTRDQLLDEVWG-FEYY 188

Query: 185 VEENVVESHISKLRKKL 201
            +   ++ H+ +LR+KL
Sbjct: 189 GDSRTIDVHVKRLREKL 205


>gi|120402833|ref|YP_952662.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955651|gb|ABM12656.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 251

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 95/215 (44%), Gaps = 31/215 (14%)

Query: 14  GYIALFGDDGVSL----------EGFNSLEFEEWLQ--SSARE---DVSAIEAFLIGKGE 58
           GY AL  DD V L          E F ++     L   S ARE   DV  ++  L   G 
Sbjct: 14  GYRALVVDDEVPLAEVIAGYLEREQFETIVAANGLDAISVARELDPDVVILDLGL--PGI 71

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             LE+ R IR  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR
Sbjct: 72  DGLEVCRQIRTFSDAYVVMLTARDTEIDTVLGLTVGADDYVTKPFSPRELVARIRAMLRR 131

Query: 119 LKVSNNRAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            +V +                GP+ +    R+  + GE   L R E  ILE L  + G  
Sbjct: 132 PRVLHTAGAAAERNVTPPRQFGPLSIDVAAREVRIDGEPILLTRTEFDILEALSGHPGIV 191

Query: 168 VAKTQIFSAIY-GLFDEAVEENVVESHISKLRKKL 201
           +++ Q+   +  G +     E++V+ HI  LR+KL
Sbjct: 192 LSRRQLIEIVRDGPW--VGNEHLVDVHIGHLRRKL 224


>gi|33591409|ref|NP_879053.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis Tohama I]
 gi|33603443|ref|NP_891003.1| phosphate regulon transcriptional regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|33571051|emb|CAE40539.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis Tohama I]
 gi|33577567|emb|CAE34832.1| phosphate regulon transcriptional regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|332380810|gb|AEE65657.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis CS]
          Length = 232

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L L R +R   +   VP+I ++   + Q  +D  ++G DD + KP   +E++AR+ 
Sbjct: 58  GASGLSLARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIK 117

Query: 114 AIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR   +++++  +   +++           +   +   E R+L + M +  +  +++
Sbjct: 118 AVLRRRAPQLTDDIIDVAGLKLDPVTHRLSGHSQSLSIGPTEFRLLHFFMTHPERVFSRS 177

Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           Q+   ++G  D   VEE  V+ HI +LRK L        V++ R  GY
Sbjct: 178 QLLDQVWG--DHVFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGY 223


>gi|154247327|ref|YP_001418285.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161412|gb|ABS68628.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 223

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 8/167 (4%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G+G   L+  R+  A    P+I ++    +   +   D+G DD + KP    E+ AR+ A
Sbjct: 57  GRGLDFLKRLRV--AGDVTPVIVLTARDQISDRIAALDAGADDYLVKPFDLFELSARIRA 114

Query: 115 IYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR   + N   + G I V    R     G    L  RE  + E  +    + ++K Q+
Sbjct: 115 VGRRYAGNPNPLVSFGDIEVDLAARSVWRAGRPVVLTGREWSLFEAFVQRPHQLMSKPQL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +Y  FD  VE N +E ++ +LRK    KLG   +++ R +GY +
Sbjct: 175 EERLYS-FDAEVESNTIEVYVGRLRK----KLGAQVIETVRGMGYRL 216


>gi|302521900|ref|ZP_07274242.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302430795|gb|EFL02611.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 267

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 13/169 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R ++AH  VP++ ++        L     G DD + KP   RE+ ARV  + RR++
Sbjct: 100 LEVCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVE 159

Query: 121 VSNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +   A T        G + V    R   V+GE   L   E  +L  L       +++ Q
Sbjct: 160 RAALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQ 219

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + ++   D A     V+SHI    K LR K+G + + +   +GY+++
Sbjct: 220 LLAEVWDWAD-ASGTRTVDSHI----KALRRKIGAERIRTVHGVGYALE 263


>gi|302390749|ref|YP_003826570.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201377|gb|ADL08947.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 104/228 (45%), Gaps = 34/228 (14%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  +   DG           EE ++ +  ++ + I   ++   +   ++ + +R 
Sbjct: 22  LAKEGYEVIAAYDG-----------EEAIEVAFSQNPNLILLDVMLPKQDGFQVCKKLRE 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
               P+I ++        +   + G DD V KP   RE++AR+ A  RRL +SN   E  
Sbjct: 71  KLACPIIMLTAKGEEVDKVLGLELGADDYVTKPFGMRELMARIKANLRRLTLSNPVEEQK 130

Query: 130 PIRVFSDGRDPEV---------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++V    +D E+         +G    L  RE  +L++L A  G+  ++ ++   ++G 
Sbjct: 131 LLKV----KDLEIDLASFQVRKKGNTLELTFREFELLKFLAAQPGQVFSREKLLEEVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDWN 223
           ++   +   V+  I +LR+K+ +    DP     + +KR +GY  + N
Sbjct: 186 YEYYGDIRTVDVTIRRLREKIED----DPSNPSYIKTKRGVGYYFNRN 229


>gi|291529995|emb|CBK95580.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           70/3]
          Length = 223

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  S+VP+I +S        +   + G DD + KP     + A++ A+ RR    S N 
Sbjct: 67  IRKLSKVPVIFLSSASDNMNVVMAMNMGGDDFIAKPFDLSVLTAKINAVLRRAYSFSGNS 126

Query: 126 AETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  V  D     V    +   L + E RIL  LM N G+ +++  +   ++   D 
Sbjct: 127 DLISHGSVILDISSAVVTNGDKKAELTKNELRILRTLMENAGRIISRDTLMQRLWET-DC 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V+EN +  ++S+LRKKL N    + + +K  +GY I
Sbjct: 186 FVDENTLTVNVSRLRKKLENIGLENYIATKVGMGYMI 222


>gi|326317379|ref|YP_004235051.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374215|gb|ADX46484.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 235

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 86/178 (48%), Gaps = 26/178 (14%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+  L+L R  RA ++   +P++ ++        +   D+G DD + KP   +E+LAR+ 
Sbjct: 60  GQSGLQLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 114 AIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           A+ RR         + +S+   + G  RV         QG+   +   E ++L YLM + 
Sbjct: 120 AVLRRRAPEQATDTVAISDLILDAGTYRV-------TYQGQQLKIGPTEFKLLHYLMKHP 172

Query: 165 GKRVAKTQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  ++ Q+   ++G  +F   +EE  V+ H+ +LR+ L   +    V++ R  GY +
Sbjct: 173 ERVHSRAQLLDKVWGDHVF---IEERTVDVHVKRLREAL--GVAGAMVETVRGAGYRL 225


>gi|291612802|ref|YP_003522959.1| PhoB family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291582914|gb|ADE10572.1| two component transcriptional regulator PhoB, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 230

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 10/169 (5%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R +RA ++   +P+I ++     +  +   +SG DD + KP   RE++AR+ 
Sbjct: 59  GTSGVELARRLRADARTRDIPIIMLTARIDERDKILGLESGADDYITKPFSPRELMARIR 118

Query: 114 AIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR   ++S+       + +          G+   L   E R+L + M +  +  ++ 
Sbjct: 119 AVLRRRAPQMSDETVRVEGVELSPTTHRVSANGQNVDLGPTEFRLLHFFMTHVERVYSRA 178

Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           Q+   ++G  D   VEE  V+ HI +LR+ L    G D  V + R  GY
Sbjct: 179 QLLDQVWG--DHVFVEERTVDVHIRRLRQALEPS-GLDGLVQTVRGSGY 224


>gi|253579802|ref|ZP_04857070.1| DNA-binding response regulator [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848801|gb|EES76763.1| DNA-binding response regulator [Ruminococcus sp. 5_1_39BFAA]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 101/230 (43%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + +L DD +L+ +G    F   G  L    +L+  E L +  + D+  ++  L  G G  
Sbjct: 4   ILLLEDDLSLI-NGLSFAFKKQGFELNIARTLKEAEELWTDGKYDLLVLDVSLPDGSG-- 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
             E  + +R  S+VP+I ++      + +   D G DD + KP     +++R+ A+ RR 
Sbjct: 61  -FEFCKRVRLTSKVPIIFLTASDEETSIIMGLDIGGDDYITKPFKLGVLVSRINALLRRA 119

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++   ++  I+V          GE+  L   E ++L   M N    + K QI   
Sbjct: 120 NSFQAADTELQSNGIKVLLLQGQVFKNGELLDLTAAEYKLLCLFMRNPSMVLTKGQILDK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL---GYSIDWN 223
           ++      ++ + +  ++ +LR K+ +    +P + +  L   G    WN
Sbjct: 180 LWDCDGNYIDSSTLTVYMRRLRMKIED----NPSEPQMLLTVRGMGYKWN 225


>gi|238028549|ref|YP_002912780.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
 gi|237877743|gb|ACR30076.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 5/201 (2%)

Query: 22  DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           DG  L+   + E  E    ++  DV  ++  L G   K + L R+       P++ ++  
Sbjct: 23  DGFMLDRVGAGEAAEDALRASTYDVVLLDLNLPGVSGKTV-LRRMRERGDATPVLILTAT 81

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDP 140
            ++   +    +G DD + KP   RE++AR+  + RR   S +NR   G +    D    
Sbjct: 82  GAVDEKVVCLGAGADDYIVKPFDARELVARIKVLARRQAPSRSNRVRCGNLVYDMDRLQF 141

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
            +      L  RE  +LE LM    K V+K  +  ++    D    E+ +E ++S+LR+K
Sbjct: 142 AIDDAPLVLTPREHAVLEALMLRARKTVSKATLAESVSA-ADAPTSEDAIEIYVSRLRRK 200

Query: 201 LRNKLGFDPVDSKRFLGYSID 221
           L        + + R LGY ++
Sbjct: 201 LEASSA--TIITLRGLGYLLE 219


>gi|229068336|ref|ZP_04201639.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229177176|ref|ZP_04304565.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228606357|gb|EEK63789.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228714797|gb|EEL66669.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N   +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 119 TNEHKQIQYHGIVWDETKHFVSVHSEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220


>gi|149181603|ref|ZP_01860097.1| YclJ [Bacillus sp. SG-1]
 gi|148850717|gb|EDL64873.1| YclJ [Bacillus sp. SG-1]
          Length = 243

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 22/204 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
            +K+G    F  DG   EG+   +  EW       D+  ++  L G  + V    +I   
Sbjct: 29  FIKEGIQGEFVHDGA--EGYQRYKEGEW-------DLVILDWMLPGM-DGVTICRKIREE 78

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128
            +Q+P+I ++   S    +   + G DD V KP     ++AR+ A+ RR +   NN AE+
Sbjct: 79  RTQIPIIMLTAKDSESDQVLGLELGADDYVTKPFSPLALMARIRAVTRRYQGEKNNTAES 138

Query: 129 GPI-----RVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             I     ++  + R+  ++G  +  L  +E  +L YL  +  +  ++ Q+   ++G +D
Sbjct: 139 TDISTTDFQISKETREVLLKGVPLTNLTPKEFDLLYYLSQHPRQVFSREQLLERVWG-YD 197

Query: 183 EAVEENVVESHISKLRKKLRNKLG 206
              +E  V+ HI    K+LRNK+G
Sbjct: 198 FYGDERTVDVHI----KRLRNKIG 217


>gi|319428492|gb|ADV56566.1| two component response regulator for KtrAB potassium uptake, KtrE
           [Shewanella putrefaciens 200]
          Length = 229

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 85/168 (50%), Gaps = 14/168 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + +R + ++P++ ++     +  +   D+G +D ++KP   RE++AR+  + R L 
Sbjct: 62  IELLQTLRRNDKIPVLVLTARDQEEEKIRLLDAGANDYLSKPFGIRELIARIKVLVRDLV 121

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++ ++      +++        +  +   L ++E  ++E LM++ G+ V +T +   I
Sbjct: 122 DESSLSDVLHFATLKLQKSTHQLWINKQEIALTKKEFALMETLMSHPGQLVKQTVLLRKI 181

Query: 178 YGLFDEAVEENVVESH-----ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G      E +  +SH     +S+LRKKL +      + ++  LGY +
Sbjct: 182 WG------ETHQEDSHYLRILVSQLRKKLNDNNEQQLIKTEAGLGYRL 223


>gi|116073933|ref|ZP_01471195.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069238|gb|EAU74990.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 248

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 26/165 (15%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR        
Sbjct: 74  LRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVDKEQVAG 133

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++VS+ R +T   +VF       + G  F L       LE L++  G+  ++ +
Sbjct: 134 IPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSL-------LELLVSRSGEPFSRGE 186

Query: 173 IFSAIYGLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           I   ++G   E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 187 ILKEVWGYTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 227


>gi|114762736|ref|ZP_01442170.1| DNA-binding response regulator [Pelagibaca bermudensis HTCC2601]
 gi|114544646|gb|EAU47652.1| DNA-binding response regulator [Roseovarius sp. HTCC2601]
          Length = 222

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
           F+L++D   + +        DG +++   SL   E   ++   D+  ++  L  G G   
Sbjct: 3   FLLVEDNGELAEAVSNRLALDGHAVDHAGSLAEAEHCLAATSYDLILLDVMLPDGDGRDF 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R   AH + P+I ++    +   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 63  LARSR---AHLETPVIVLTARARVTDRVGALDQGADDYITKPFDFSELEARVRAVLRRRG 119

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  N    G              GE   L  RE R+LE    + G+  +K Q+   ++ 
Sbjct: 120 GSARNEIPLGEALFDPMSGTLRAGGESVTLRNRETRLLEVFARHPGQTFSKGQLLDRLFS 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD  V EN +E ++ +LR+++   LG   +++ R LGY ++
Sbjct: 180 -FDAEVTENAIEVYVGRLRRRI-GPLGLR-IETVRGLGYRLE 218


>gi|300870079|ref|YP_003784950.1| transcriptional regulatory protein [Brachyspira pilosicoli 95/1000]
 gi|300687778|gb|ADK30449.1| transcriptional regulatory protein [Brachyspira pilosicoli 95/1000]
          Length = 227

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 5/167 (2%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           +G  +L++ R   AH  + +I ++   S    +   + G DD + KP    E++AR+ A 
Sbjct: 61  EGTDILKIIRTDYAHLPIKVIMLTAKSSEINIVTGLNLGADDYIPKPFSVLELIARIKAN 120

Query: 116 YRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            R+  ++V       G I++    R   V      L ++E  +L+ LM N    V +  +
Sbjct: 121 LRKKDVRVDTEELTFGEIKLIVKKRVVYVNDRQVSLTQKEFDLLKLLMENANNVVDREMM 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G+ + ++E   ++ HI  +R+KL   L  + + + R +GY +
Sbjct: 181 LEEVWGV-EHSMETRTIDMHIKSIRQKL--DLKKENIITIRGMGYKL 224


>gi|317129718|ref|YP_004096000.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474666|gb|ADU31269.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 251

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 12/119 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVS-----------NNRAETGPIRVFSDGRDPEV 142
           G DD V KP+ ++E+ ARV +I RR               NN+   G + + ++      
Sbjct: 96  GADDYVFKPLRYKELHARVKSILRRGSYCCDYKNSQNNGDNNKFINGNLMLDANHFMVYN 155

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +GE   L R+E  +L YL  N+GK + + ++   + G  DE ++E +++  IS++R K+
Sbjct: 156 KGEPVDLTRKEYELLYYLFLNKGKVLTRMELMKELSGESDE-LDERIIDVFISRIRTKI 213


>gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 240

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 33/227 (14%)

Query: 2   FVLIDDRALVKDG----------YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA 51
            +L++D   ++D           ++   GD   +LE F+   F          D+  ++ 
Sbjct: 11  ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHF----------DLVILDL 60

Query: 52  FLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
            L    GE+V    R IR +S VP+I ++    ++  +   + G DD + KP   RE++A
Sbjct: 61  MLPRVPGERVC---RAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVA 117

Query: 111 RVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           RV A+ RR+   +       E G + +   G    V G+   L   E ++L  L    G+
Sbjct: 118 RVRALLRRVHADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGR 177

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             ++ ++   + G +D    E  ++SH+    K LR K+G +P + K
Sbjct: 178 VYSRMELVEKVLG-YDFEGYERTIDSHV----KNLRAKIGDNPRNPK 219


>gi|212638130|ref|YP_002314650.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559610|gb|ACJ32665.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 226

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 6/169 (3%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  + +  R    H  + ++   D  ++Q  ++  ++G DD + KP    E++AR+ A
Sbjct: 61  GDGVSICQRLRKRGYHGAILMLTAKD--AVQDRVEGLEAGADDYLVKPFEIDELMARLKA 118

Query: 115 IYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + RR    +       G   V          GE   L  RE ++L+ L+ NRG+ + +  
Sbjct: 119 LSRRTFAPIQEEIVRWGAFEVNRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDI 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I   I+G +D  V    +++ +  LRKK+ ++     + + R +GY+I+
Sbjct: 179 ILDRIWG-YDADVSMKTIDATVKLLRKKIGDEQQ-QLIKTVRGVGYTIE 225


>gi|208434119|ref|YP_002265785.1| response regulator [Helicobacter pylori G27]
 gi|208432048|gb|ACI26919.1| response regulator [Helicobacter pylori G27]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R I     +P+I  S    ++  +   D G DD + KP   +E+LAR+ ++ RR  
Sbjct: 61  LEVCRRISKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSH 120

Query: 121 VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +E G   +F    D R+  +  +   L R E  IL  L++ +G   ++  I    
Sbjct: 121 KKEEVSEPGDTNIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI---- 176

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDW 222
             +  E++        I  +  +LR+K+  +P     + S R +GY +++
Sbjct: 177 -AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKLEY 225


>gi|254466921|ref|ZP_05080332.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium Y4I]
 gi|206687829|gb|EDZ48311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium Y4I]
          Length = 229

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R ++  S+   +P+I +S        +   ++G DD V KP    E++ARV    R
Sbjct: 65  IEVCRRLKTRSETRNIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLR 124

Query: 118 RLKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++ S    R E   I + ++            L   E R+L   M   G+  ++ Q+  
Sbjct: 125 RVRPSTVGVRLEFDDIVLDAETHKVSRADNPLKLGPTEFRLLSTFMEKPGRVWSREQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 185 RVWG-RDIYVDTRTVDVHIGRLRKALTQHGGSDPVRTVRGAGYAL 228


>gi|182435453|ref|YP_001823172.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776090|ref|ZP_08235355.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178463969|dbj|BAG18489.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656423|gb|EGE41269.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 231

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 13/164 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  ++VP++ +S   +    ++  D+G DD V KP    E+LAR+ A  RR +
Sbjct: 61  VEVIRGLRGWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRASVRRAE 120

Query: 121 VSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         ET    V    +     G    L   E  +LE L+ N G+ V++ Q
Sbjct: 121 PVGQEGGAEDIALVETAGFTVDLAAKKVHRAGRDVRLTPTEWHLLEVLVRNGGRLVSQKQ 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +   ++G      E N +  ++++LR+KL      DP   + F+
Sbjct: 181 LLQEVWG-PSYGTETNYLRVYMAQLRRKLEA----DPSHPRHFV 219


>gi|206968529|ref|ZP_03229485.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206737449|gb|EDZ54596.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNE 121

Query: 122 SNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  G   V+ + +    V  E   L   E  +L   + +    + + Q+   I+GL
Sbjct: 122 HKQIQYHGI--VWDETKHFVSVHSEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
            +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 180 -NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220


>gi|153814388|ref|ZP_01967056.1| hypothetical protein RUMTOR_00598 [Ruminococcus torques ATCC 27756]
 gi|145848784|gb|EDK25702.1| hypothetical protein RUMTOR_00598 [Ruminococcus torques ATCC 27756]
          Length = 234

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 22/220 (10%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67
           AL K+GYI          + F+  E    LQ   R  V  ++  L G  GE+VL   R I
Sbjct: 27  ALEKEGYICT--------QAFSGTEARMILQGE-RYSVILLDLMLPGIPGEEVL---RDI 74

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R     P+I ++   ++   ++F   G DD V KP   +E+ ARV    RR + +  + E
Sbjct: 75  RKKGNTPVIILTAKDTIDDKVEFLRGGADDYVTKPFDIKEVTARVEVQIRRAETTGRKEE 134

Query: 128 T-----GPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                   + +       +V     P + ++E  ILE L+ +  K  +K ++F   Y   
Sbjct: 135 EHRFTYQELELNKGDFTVKVGNTELPHITKQEFSILELLLKHPKKVFSKEEMFE--YAWE 192

Query: 182 DEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ + E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 193 EQYMGETKTLDVHISNIRKKIKAVTDKEYIETVWGIGYRL 232


>gi|70729941|ref|YP_259680.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68344240|gb|AAY91846.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 227

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 8/154 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET 128
             P++ IS    +   +    +G DD + KP    E+ ARV  + RR   +K  +     
Sbjct: 73  STPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRKNTVKDFDTSLRV 132

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187
             + +    R+     ++  L   E ++LE+LM N G+ +++  IF  ++G  FD     
Sbjct: 133 ADLELNLISREATRADQLLSLLPTEYKLLEFLMRNTGQILSRMMIFEEVWGYHFDPGT-- 190

Query: 188 NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           N+++ HI +LRKK+ +  G  P + + R  GY I
Sbjct: 191 NLIDVHIGRLRKKI-DPPGMTPLIRTVRGSGYVI 223


>gi|56552060|ref|YP_162899.1| two component transcriptional regulator PhoB [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|4768853|gb|AAD29647.1|AF124757_7 phosphate regulatory protein PhoB [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543634|gb|AAV89788.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 231

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 8/172 (4%)

Query: 56  KGEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +G   +E+ R +R +   + +P+I ++        +   ++G DD V KP   RE++ARV
Sbjct: 58  EGTSGIEVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARV 117

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAK 170
            A+ RR++ + ++ +     +  D     V+  G    +   E R+L +LM    +  ++
Sbjct: 118 LAVLRRIRPALSKEQLNYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
            ++   I+G  D  +E   V+ HI +LRK L N+ G  D + + R  GY++D
Sbjct: 178 EKLLDYIWGQ-DSDIELRTVDVHIRRLRKAL-NRDGLPDLIRTVRSAGYALD 227


>gi|15616473|ref|NP_244779.1| two-component response regulator [Bacillus halodurans C-125]
 gi|41688518|sp|Q9K621|BCER_BACHD RecName: Full=Sensory transduction protein BceR
 gi|10176536|dbj|BAB07630.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 231

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 19/165 (11%)

Query: 65  RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           R+IR HS VP+I +S  D+P+ +  ++     G DD + KP H   ++A++ AI RR  V
Sbjct: 65  RMIRQHSNVPIIFLSSRDHPTDMVMSMQL---GADDFIQKPFHFDVLVAKIQAILRR--V 119

Query: 122 SNNRAETGPIRVFS----DGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N  +E   ++ +     D     V   V    L + E  IL+ L+  + K V +  +  
Sbjct: 120 HNYTSEQTQLKTWCGATIDYESNTVSNHVGSIELSKNEFFILKRLIERKNKIVTRDDLIR 179

Query: 176 AIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +++   DE  + +N +  ++++LRK+L ++LG    +++K   GY
Sbjct: 180 SLWE--DERFISDNTLTVNVNRLRKRL-DELGLGAYIETKVGQGY 221


>gi|17227568|ref|NP_484116.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17135050|dbj|BAB77596.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 224

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 28/221 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L + GYI    +DG         E  EWL S    D+  ++  L       L L R  R 
Sbjct: 20  LSEAGYIVDTAEDG---------EIAEWLISQKDYDLLILDWMLPTISG--LSLCRQYRC 68

Query: 70  HSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LK 120
             +  P++ ++   +    +   D+G DD + KP    E+LARV A+ RR        L+
Sbjct: 69  SGKTAPILMLTARDTTPDKVMGLDAGADDYLVKPADLVELLARVRALARRVPNWQGDSLR 128

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++ +     + V  +    +++ E+ P   RE R+LEYLM +  + + ++QI  A++  
Sbjct: 129 VADLQLHLAYLTVERE----QIKVELSP---REARLLEYLMRHPNQVLTRSQIEEALWEW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E N +   + KLR +L+     + + +   +GY ++
Sbjct: 182 GMEP-ESNALTVLVRKLRHRLQQVDAAEWIRTVYGMGYRLN 221


>gi|332992917|gb|AEF02972.1| putative two component response regulator transcription regulator
           protein [Alteromonas sp. SN2]
          Length = 227

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 86/166 (51%), Gaps = 6/166 (3%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++LE  R  ++ +Q P++ ++   S+   +   + G DD + KP    E+LARV  ++
Sbjct: 59  GWRILESLR--QSGNQTPVLFLTARDSVNDRVKGLELGADDYLVKPFAFAELLARVRTLF 116

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR   V+ N  +   +++    R  +  G+   L  +E  +LE ++  +G+ + ++ I S
Sbjct: 117 RRGNTVAANLLQVADLQMDIPSRVVKRAGQSINLTTKEFSLLELMVRRQGEVLPRSLIAS 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ + FD   + NV++  I +LR K+ +      + + R +GY +
Sbjct: 177 QVWDINFDS--DTNVIDVAIRRLRAKIDDAFSPKLIQTVRGMGYKL 220


>gi|319408250|emb|CBI81903.1| two-component response regulator [Bartonella schoenbuchensis R1]
          Length = 228

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 25/222 (11%)

Query: 7   DRALVKDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++A ++ GY   IA  GD G SL    + +     +     D  +I + L  KG      
Sbjct: 17  EKAFLEVGYTADIACDGDTGYSLAETGNYDVMVVDRMLPHRDGLSIVSELRAKG------ 70

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
                  ++ P++ +S    +   +    +G DD + KP    E+LAR+  + RR   S 
Sbjct: 71  -------NETPVLILSALGQVDDRVTGLRAGGDDYLTKPYAFLELLARIEVLQRR--KSP 121

Query: 124 NRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             AET    G + +       +  G    L  RE R+LEYLM   G+ V +T +   ++ 
Sbjct: 122 KEAETVYCVGNLELDRLAHTVKRGGINIILQPREFRLLEYLMRYAGQVVTRTMLLENVWD 181

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD   + NV++ HIS+LR K+        + + R  GY +
Sbjct: 182 YHFDP--QTNVIDVHISRLRAKIEKDFDIPLLHTVRGAGYML 221


>gi|319407828|emb|CBI81481.1| two-component response regulator [Bartonella sp. 1-1C]
          Length = 226

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P+I I+   +   T+  F  GV+D V KP     +LAR+ A  R+ + + +  + GP 
Sbjct: 76  RAPIIMITYCDTDCDTILDFKMGVNDYVTKPFRFSVLLARIRAQLRQYEHNEDSFDLGPY 135

Query: 132 RVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +F        + Q  +  L  +E  IL+YL   R K V +  +   ++G ++  +  + 
Sbjct: 136 -IFKPREKFLIDQQNNIINLTEKETAILKYLYETRDKIVNREALLEHVWG-YNANIITHT 193

Query: 190 VESHISKLRKKL 201
           +E+HI +LRKK+
Sbjct: 194 LETHIYRLRKKI 205


>gi|300703822|ref|YP_003745424.1| DNA-binding response regulator in two-component regulatory system
           with phor [Ralstonia solanacearum CFBP2957]
 gi|299071485|emb|CBJ42807.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum CFBP2957]
          Length = 237

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 17/164 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
           Q+P+I ++     Q  +   D G DD V KP   +E+LAR+ A+ RR         + ++
Sbjct: 76  QIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135

Query: 123 NNRAETGPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             R +    RV +   + E  ++ ++ P    E R+L +LM +  +  +++Q+   ++G 
Sbjct: 136 GLRLDPATHRVTALNSESENPIKLDLGP---TEFRLLHFLMTHPERVHSRSQLLDQVWG- 191

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D   VEE  V+ HI +LR  L      + +++ R  GY +  N
Sbjct: 192 -DHVFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234


>gi|260219945|emb|CBA26990.1| Transcriptional regulatory protein qseB [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 229

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 10/207 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +V  G      D G +++   S E    +  +   DV+ ++  L       L
Sbjct: 4   LLLVEDDVMVASGIKLGLTDAGYAVDWVGSAERALEVTQTESFDVAVVDIGL--PHMDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R + Q +P++ ++   +LQ  +   D G DD + KP    E+LAR+ A+ RR +
Sbjct: 62  ALTRSLRKNGQTMPVLILTARDALQDRVQGLDMGADDYMVKPFELPELLARLRALLRRSQ 121

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGE-----VFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + +   + GP+ + +  R   ++GE        L  RE  ++EYL+    K   K ++ 
Sbjct: 122 AATSSILSFGPLELDTAQRVACIRGEGQIATPLELGPREWTVMEYLLLQAPKPANKDKLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
            A+ G +D+ +  N VE +IS+LR KL
Sbjct: 182 QALTG-WDKEITPNAVEVYISRLRGKL 207


>gi|221310979|ref|ZP_03592826.1| hypothetical protein Bsubs1_16551 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315306|ref|ZP_03597111.1| hypothetical protein BsubsN3_16457 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320223|ref|ZP_03601517.1| hypothetical protein BsubsJ_16378 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324505|ref|ZP_03605799.1| hypothetical protein BsubsS_16527 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 249

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 17/147 (11%)

Query: 65  RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           R+IR+ S VP++ +S  D+P+ +  ++     G DD + KP H   ++A++ A++RR  V
Sbjct: 83  RLIRSRSNVPILFLSSRDHPADMVMSMQL---GADDFIQKPFHFDVLIAKIQAMFRR--V 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +   E   I+ +        Q  V        L + E  IL+ L+  + K V++ ++  
Sbjct: 138 HHYNTEPSTIKTWCGAAVDAEQNLVSNDKGSVELTKNEMFILKQLIEQKNKIVSREELIR 197

Query: 176 AIYGLFDEA-VEENVVESHISKLRKKL 201
           +++   DE  V +N +  ++++LRKKL
Sbjct: 198 SLWN--DERFVSDNTLTVNVNRLRKKL 222


>gi|229816442|ref|ZP_04446743.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
 gi|229807984|gb|EEP43785.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
          Length = 278

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 74/179 (41%), Gaps = 23/179 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR     P+I ++   S    ++    G DD + KP    E++AR  A  RR  
Sbjct: 104 FELLRTIRTERTYPVIMLTARDSQSDKIEGLTLGADDYMVKPFRPLELVARCKAQLRRYT 163

Query: 121 VSNNRAE------TGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
              +R +       GPI  F+      D R   V  +       E  IL YL  +RG  V
Sbjct: 164 RYGSREQAAPVEDAGPIISFNGLEINRDARTVTVDEKSVRCTPLEYSILLYLAEHRGHVV 223

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221
              ++F A++     A   N V  HI  LR+KL      D   + RF+      GY+I+
Sbjct: 224 PVEELFRAVWDEEFMAGSNNTVMVHIRHLREKLG-----DDAQNPRFIKNIWGVGYTIE 277


>gi|168185446|ref|ZP_02620081.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169296251|gb|EDS78384.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 232

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 11/143 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120
           IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR       K
Sbjct: 69  IREKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVRFASYK 128

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    + G I +  + +   V GE   L   E +ILE LM N+G+  +  QI+  ++  
Sbjct: 129 RNTEELQVGGIILNKNTKLVSVDGEEVRLTPIEYKILELLMENKGQVFSIEQIYENVW-- 186

Query: 181 FDEAV--EENVVESHISKLRKKL 201
            +E     EN V  HI ++R+K+
Sbjct: 187 -NEPCYNAENTVPVHIRRIREKI 208


>gi|56540655|gb|AAV92781.1| PmrA [Salmonella enterica]
 gi|56540657|gb|AAV92782.1| PmrA [Salmonella enterica]
          Length = 222

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRVRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRR--- 118

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            NN+ E+    G + +          G+   L  +E  +L  LM   G  V +  +++ I
Sbjct: 119 HNNQGESELTVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|83643824|ref|YP_432259.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631867|gb|ABC27834.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 244

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 109/223 (48%), Gaps = 16/223 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--AREDVSAIEAFLIGK-GE 58
            ++++D   ++ G + +F   G  ++   +++ ++ L  S     D+  ++  L GK G 
Sbjct: 17  ILIVEDETAIRTGLVDVFVYHGYDVD--FAVDGDDGLNKSLNGAYDLILLDVMLPGKNGY 74

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ E  R+ +   Q P+I ++   S +  +     G DD V KP    +++ RV A+ RR
Sbjct: 75  EICEAVRL-KDRDQ-PIIMLTAKSSDEDVIHGLSLGADDYVAKPFSVAQLVLRVQAVLRR 132

Query: 119 LKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + ++    +    G + + +     + +GE     RRE  +L+YL  +  + V++ ++ 
Sbjct: 133 SRSASLDDAHICLLGGLEIDTLNLSCQHKGEDVAFTRREMDVLQYLHEHSERPVSREELL 192

Query: 175 SAIYGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           + ++G   D  +E   V+ HI+KLR+K+      DP   +R +
Sbjct: 193 NKVWGYARDLDIETRTVDIHIAKLRRKIEA----DPKQPQRLV 231


>gi|319653246|ref|ZP_08007348.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317395167|gb|EFV75903.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 213

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I+ +  +P+I ++        +   + G DD + KP    E+ AR+ A+ RR K      
Sbjct: 55  IKKYWDIPIIMLTAKSEKPDIVKGLNIGADDYILKPFDEEELSARIEAVLRRSKKDGKTK 114

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               + +  D  +   + +   L  +E  +L   ++N  +  ++  +  +++G +  ++E
Sbjct: 115 TFKGLDLKEDSFELCYKNKEILLTPKEFSMLSLFLSNLNRVFSREHLIGSVWG-YGVSIE 173

Query: 187 ENVVESHISKLRKKLRNKLGFDPVD 211
           +  ++SH+  LR+KLR K GF P D
Sbjct: 174 DRTIDSHVRNLREKLR-KAGF-PAD 196


>gi|310826637|ref|YP_003958994.1| two-component response regulator [Eubacterium limosum KIST612]
 gi|308738371|gb|ADO36031.1| two-component response regulator [Eubacterium limosum KIST612]
          Length = 231

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 4/146 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   ++  + VP+I +S+Y      ++ F SG DD V KP   RE+  R+ A  R+ +
Sbjct: 61  FEVCEEVKKKTNVPIIFVSNYAEEDKRINGFVSGGDDYVIKPFSLRELELRICARIRQQE 120

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +ET   G + +    R    + ++  L   E  IL +L  +  +  ++  IF  +
Sbjct: 121 GKTKCSETLDFGKLSINKAARSVAYKEDMISLTAAEFDILFFLANHENQVFSQKDIFERV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN 203
           + L D     + V+ H++++R+KL +
Sbjct: 181 WKLPDLG-NAHTVQVHVAQIRRKLNS 205


>gi|307154731|ref|YP_003890115.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984959|gb|ADN16840.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 225

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 78/156 (50%), Gaps = 3/156 (1%)

Query: 67  IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NN 124
           IRA    VP++ ++   S++  +   + G DD + KP    E+LAR+ A+ RR  +  N 
Sbjct: 66  IRAKKVSVPILLLTARDSVEDRVKGLNQGADDYMVKPFAFSELLARIRALQRRPPLQFNT 125

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               G + +    R+ +   ++  L   E ++LEYL+ N  + + +TQI   ++ L D  
Sbjct: 126 VLALGDLTMDLVTREVKRGDKLIDLSPLEFKLLEYLLRNCNQVLTRTQIGEQVWNL-DFY 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              NVV+ ++  LR+K+        + + R +GY +
Sbjct: 185 SNSNVVDVYVGYLRRKIDRGFQRPLLHTVRGVGYCM 220


>gi|11465824|ref|NP_053968.1| Ycf27 [Porphyra purpurea]
 gi|1723330|sp|P51358|YCF27_PORPU RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|1276824|gb|AAC08244.1| hypothetical chloroplast ORF 27 [Porphyra purpurea]
          Length = 243

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 9/146 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR  K++ N 
Sbjct: 71  LRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKITTNL 130

Query: 126 A-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +++ ++ R      E   L   E  +LE L++  G+  ++  I   ++
Sbjct: 131 GVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASILQEVW 190

Query: 179 GLFDE-AVEENVVESHISKLRKKLRN 203
           G   E  V+  VV+ HIS+LR KL +
Sbjct: 191 GYTPERHVDTRVVDVHISRLRAKLED 216


>gi|153950414|ref|YP_001399859.1| DNA-binding response regulator CreB [Yersinia pseudotuberculosis IP
           31758]
 gi|152961909|gb|ABS49370.1| transcriptional regulatory protein CreB [Yersinia
           pseudotuberculosis IP 31758]
          Length = 232

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 11/231 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +  L++D   + D  I     +G +L  F+  E      SS    ++ ++  L    G  
Sbjct: 4   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPALAIVDVGLPDINGFD 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +    R++ A   +P+I ++        +   + G DD + KP   RE+ ARV  I RRL
Sbjct: 64  LCR--RMLAAAPDLPVIFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTILRRL 121

Query: 120 K------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +      V++   + G   +   G       ++  L R E  +L+ L+    +  ++ Q+
Sbjct: 122 QKSHLLAVASTSHQFGHFSLDEAGARVTYHQQILGLTRYEYLLLKTLLLAPERIFSRQQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
              ++   +E+ ++  V++HI  LR KLR     D P+ + R LGYS+ + 
Sbjct: 182 MDIVWAQAEES-QDRTVDTHIKTLRSKLRTVYAEDSPIRTHRGLGYSLGYQ 231


>gi|77406903|ref|ZP_00783927.1| response regulator [Streptococcus agalactiae H36B]
 gi|77174489|gb|EAO77334.1| response regulator [Streptococcus agalactiae H36B]
          Length = 217

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 16/224 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGK 56
            +++DD  ++++G  A   ++G    ++ +G  +LE F E+        +  +   L+  
Sbjct: 3   ILVVDDEDMIREGVAAFLREEGYHVILAKDGQEALEKFHEF-------PIHLMVLDLMLP 55

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                E+ + I  +  +P+I +S     +T +  FD   DD V KP     ++ R+ A+ 
Sbjct: 56  KRSGFEVLKEINGNHDIPVIVLSALGDEETQIQVFDLYADDHVTKPFSLVLLVKRIQALL 115

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR  V  +      + V        V+ E   +  +E  +L+ L+ ++ + +++ QI  +
Sbjct: 116 RRYYVVEDIWHYQDVAVDFTSYQARVKNEEVAIKPKELLVLKCLIQHKNQVLSREQILES 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   F +   + VV+ +I  LRK    KL  D + + +  GY I
Sbjct: 176 ISNDFADLPLDRVVDVYIRNLRK----KLDLDCIVTVKNAGYKI 215


>gi|330958140|gb|EGH58400.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 222

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++     +  + +   A E    I   L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLA--DGRDAVHQGASEPYDLIVLDLGLPGMSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+    R+     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLEQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GMANQPTLESAGLNLDESRQCVSRDGVDVQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+    KLG   ++++R  GY
Sbjct: 181 DGENER-DSNVIEVHVNHLRR----KLGRTVLETRRGQGY 215


>gi|326391416|ref|ZP_08212953.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992551|gb|EGD51006.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 231

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRR--- 119

Query: 122 SNNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +++      +  F++            + +G V  L   E +IL++L+ N  +   + ++
Sbjct: 120 TSDDVPLAEVMSFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREEL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              + G FD    +  +++HI  LR+K+ +
Sbjct: 180 IEKVMG-FDYEGYDRTIDAHIKNLRQKIED 208


>gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 224

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 1/159 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R  R  + +P++ +S    +++ +   + G DD + KP    E+LARV A+ RR   
Sbjct: 63  EICRRFRRENFIPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALLRRKTN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    +   +++    R+    G +  L  +E  +L+  + +  + + K  I   I+G+ 
Sbjct: 123 SAKVIQFADLKMDLSTREVHRAGVLLSLTSKEFDLLQLFLQHPNQVLTKDTIIDHIWGI- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     NV+E +++ LR+KL        + + R +GY +
Sbjct: 182 DYTGGSNVLEVYVNMLRQKLEEGNRSRLIHTVRGVGYVL 220


>gi|309389284|gb|ADO77164.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 225

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 13/149 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + IR  S +P+I ++   S +  +  F+ G DD + KP   RE+L RV A+ RR   
Sbjct: 61  EVCQNIRQISDIPIIMLTAKSSEEHKIAGFNYGADDYLTKPFSPRELLVRVKALLRRSQN 120

Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +K +N  A   G  ++F +            L   E +IL  L+ N  + +++ Q+   +
Sbjct: 121 VKKANVIALNKGEYKIFPEKMIVTKDDLDCELTTTEFKILMALINNANQVLSREQLADIV 180

Query: 178 YGL----FDEAVEENVVESHISKLRKKLR 202
            GL    FD       +++HI  +RKK++
Sbjct: 181 MGLEFSGFDRT-----IDAHIKNIRKKMK 204


>gi|302557885|ref|ZP_07310227.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302475503|gb|EFL38596.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 253

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 17/199 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R LV DGY      DG +         +E ++     D+  ++  L   G   LE+ R I
Sbjct: 40  RYLVHDGYAVTVVHDGPT-------ALDETVKRPP--DLLVLDWML--PGLDGLEICRRI 88

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           RA   +P++ ++   +    L   D G DD + KP   RE++ARV  + RR +    R E
Sbjct: 89  RATGDMPILMLTARSTEDDLLLGLDIGADDYMTKPFRPRELVARVRTLLRRTRQQQERTE 148

Query: 128 -----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 GP+ V  D  +  V G        E R+L  L+A   +   + Q+   I     
Sbjct: 149 EVLLTAGPLTVAPDRHEVSVNGRPVNCTPSEFRLLSTLVAAPERVFTRAQLLHCITD-HG 207

Query: 183 EAVEENVVESHISKLRKKL 201
            AV E  V+ H+  LRKK+
Sbjct: 208 RAVTERTVDMHMVNLRKKI 226


>gi|298249466|ref|ZP_06973270.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547470|gb|EFH81337.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 233

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 12/155 (7%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P++ ++   S++  +   + G DD + KP    E+LARV A+ RR     +R      ++
Sbjct: 74  PVLMLTARGSVEDRVAGLNVGADDYLPKPFAMEELLARVNALLRR----RDRTFEVATQL 129

Query: 134 FSDG------RDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            +D       R    +GE V  L  +E  +LEYLM + G+ + +TQI  A++  +D    
Sbjct: 130 RADDLILDLVRHEARRGERVIELTAKEFALLEYLMRHPGQALTRTQITDAVWR-YDLEAL 188

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            NVV+ +I  LR K+        + + R +GY ++
Sbjct: 189 SNVVDIYIHYLRDKIDQGFTRPLIKTVRGIGYKLE 223


>gi|316934891|ref|YP_004109873.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602605|gb|ADU45140.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 241

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 23/162 (14%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           ++ P++ +S    +   +    +G DD + KP    E+LARV  + RR       AE   
Sbjct: 86  NRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRR---HGGPAEETS 142

Query: 131 IRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
            RV     D E+          GE   L  RE R+LEYLM + G+ V +T +   ++   
Sbjct: 143 YRVG----DLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYH 198

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           FD   + NV++ HIS+LR K+    GFD   + + R  GY I
Sbjct: 199 FDP--QTNVIDVHISRLRGKIDK--GFDRPLLHTIRGAGYMI 236


>gi|281603735|gb|ADA76719.1| Catabolic regulation response regulator [Shigella flexneri 2002017]
 gi|332749163|gb|EGJ79586.1| transcriptional regulatory protein creB [Shigella flexneri K-671]
 gi|333022265|gb|EGK41503.1| transcriptional regulatory protein creB [Shigella flexneri K-304]
          Length = 229

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 12/224 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62
           L++D   + D  + +   +G ++E F   E    +   AR+ V  +    +G  +    E
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R + A +  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K 
Sbjct: 65  LCRQLLALYPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177
            +  +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  ++
Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    +  +   V+ HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WEDAQDTYDRT-VDIHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|302865105|ref|YP_003833742.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302567964|gb|ADL44166.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 226

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 17/149 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R +R  + VP+I +S     +  +   D+G DD V KP    E+LAR+ A+ RR      
Sbjct: 65  RGLRGWTAVPIIVLSGRAGSEDKVAALDAGADDYVTKPFGVDELLARIRAVTRRLAPATP 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L++ +N  +     V    RD  V+ ++ P    +  +LE L+ N GK V++ Q+ 
Sbjct: 125 AVPALRIGHNTVDLADRTVT---RDDGVEVKLTPT---QWAMLEKLLRNPGKLVSQRQLL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
             ++G  +   E N +  ++++LR+KL +
Sbjct: 179 HDVWG-PEYHHETNYLRQYMAQLRRKLED 206


>gi|167566282|ref|ZP_02359198.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167573386|ref|ZP_02366260.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 256

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 18/211 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            V+++D  + +   +A    +G  +E F + LE   +L  S  + +          GE++
Sbjct: 23  IVVVEDDPVQRTLLVAWLKAEGYRVEAFGDGLEARRFLGDSWADLLLLDWDLPGMTGERL 82

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L   R  RA S VP+I  + +   +  +   D+G DD + KP+  + +LARV A+ RR  
Sbjct: 83  LAWVRG-RARSIVPVIFQTVHSDEEDIVKILDAGADDFLIKPLEKQTLLARVRALLRRFA 141

Query: 119 -LKVSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            L V + R + G           SDG          P   +E  IL +L  + G  V + 
Sbjct: 142 ALSVDSGRMQLGRYVLSRATLTVSDGSASH------PFSAKEFDILWHLAEHPGTVVQRQ 195

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            +   ++G  + + +   V+ ++S+LR +L+
Sbjct: 196 DLLRLVWG-SEASAQTRSVDMYVSRLRGRLK 225


>gi|159037022|ref|YP_001536275.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915857|gb|ABV97284.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 252

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRAETGPIRVFSDGRD 139
           SL+  L   + G DD + KP    E++ARV A+ RRL     +++R     + +  D   
Sbjct: 108 SLEDRLTGLNLGGDDYITKPFSVAEVVARVNAVLRRLGGRPDASHRLTLADLVLDEDAHT 167

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
               G    L   E R+L +L+ N G+ ++K QI + ++  +D   +  VVE  +S+LR+
Sbjct: 168 VTRAGVAVELSPTEFRLLRHLLENAGRVLSKQQILAQVWQ-YDFPGDPGVVEKFVSQLRR 226

Query: 200 KLRNKLGFDPVDSKRFLGYSI 220
           K+ +  G   + + R  GY +
Sbjct: 227 KI-DASGPPLLHTVRGFGYVL 246


>gi|57167627|ref|ZP_00366767.1| response regulator (ompR) [Campylobacter coli RM2228]
 gi|305433132|ref|ZP_07402288.1| DNA-binding response regulator [Campylobacter coli JV20]
 gi|57020749|gb|EAL57413.1| response regulator (ompR) [Campylobacter coli RM2228]
 gi|304443833|gb|EFM36490.1| DNA-binding response regulator [Campylobacter coli JV20]
          Length = 223

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 5/146 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR    +P+I  S    L   +     G DD + KP   +E+ AR+ ++ RR K
Sbjct: 60  LEVCREIRQKYNIPIIISSARGDLSDKVVGLQIGADDYLPKPYDPKEMHARIMSLIRRTK 119

Query: 121 VSNNRAETGPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + N         F  D R  E+  Q +V  L   E  ILEYL+   G  V++ Q+ S  
Sbjct: 120 RAENTNNENINSAFKIDERKHEITYQNKVLTLTPAEYEILEYLIQQHGYSVSREQLVSRC 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN 203
             L D+  +   ++  I +LR K+ +
Sbjct: 180 KNLKDK--DSKSLDVIIGRLRTKIND 203


>gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi
           103S]
 gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi
           103S]
          Length = 224

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 5/112 (4%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNN----RAETGPIRVFSDGRDPEVQGEVFPL 149
           G DD V KP    E++ R+  I RR   S++    R     + +  D R+    GE   L
Sbjct: 92  GADDYVTKPFSLEEVVTRLRVILRRAGHSDDKQSARVTFADLELDDDTREVWKAGEPVSL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              E  +L Y M N G  ++K +I   ++  +D   E  VVES++S LR+K+
Sbjct: 152 SPTEFTLLRYFMVNAGTVLSKPRILDHVWN-YDFGGEVGVVESYVSYLRRKI 202


>gi|255009234|ref|ZP_05281360.1| putative two component system response regulator [Bacteroides
           fragilis 3_1_12]
 gi|313146983|ref|ZP_07809176.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
 gi|313135750|gb|EFR53110.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
          Length = 224

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 6/153 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
           +I  G   LEL R+ R      VP+I ++   + +  +   D+G DD + KP   +E+ A
Sbjct: 53  IIMPGMNGLELCRLYRRQYGYLVPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEA 112

Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVA 169
           R+ AI RR +  + R       V +       +GE    L  +E R+LEY M ++G  ++
Sbjct: 113 RIKAILRRGREDSARQLVCDDLVLNCNSRRARRGEAEIDLTVKEYRLLEYFMTHQGLVLS 172

Query: 170 KTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201
           +  +   ++   FD     NVV+ +++ LR K+
Sbjct: 173 RLTLLRDVWDKNFD--TNTNVVDVYVNYLRGKI 203


>gi|227510111|ref|ZP_03940160.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190490|gb|EEI70557.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 245

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 107/228 (46%), Gaps = 30/228 (13%)

Query: 12  KDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           K+G+   F  DG+ +++ FN  + E W       D+  ++  L  K    +E+ + IRA 
Sbjct: 22  KEGWDVSFAYDGIEAVDMFNE-DPESW-------DMITLDLNLPKKD--GMEVAKEIRAK 71

Query: 71  SQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127
           S+ VP+I ++   S    +  F+ G DD V KP     ++AR+ A+ RR        E  
Sbjct: 72  SKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRRAHTEAQAEEPE 131

Query: 128 -------------TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQI 173
                        T   ++ ++ R+  + G++ P L  +E  +L  L     +  ++ Q+
Sbjct: 132 HSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQKPRQVFSREQL 191

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G ++   +E  V++HI KLR+K+  ++G   + +   +GY  D
Sbjct: 192 LELVWG-YEYYGDERTVDAHIKKLRQKI-ERVGPQVIQTVWGVGYKFD 237


>gi|295836531|ref|ZP_06823464.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74]
 gi|197699650|gb|EDY46583.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74]
          Length = 245

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 13/169 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R ++AH  VP++ ++        L     G DD + KP   RE+ ARV  + RR++
Sbjct: 78  LEVCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVE 137

Query: 121 VSNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +   A T        G + V    R   V+GE   L   E  +L  L       +++ Q
Sbjct: 138 RAALAAATPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQ 197

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + ++   D A     V+SHI    K LR K+G + + +   +GY+++
Sbjct: 198 LLAEVWDWAD-ASGTRTVDSHI----KALRRKIGAERIRTVHGVGYALE 241


>gi|167579535|ref|ZP_02372409.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia thailandensis TXDOH]
          Length = 232

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 9/144 (6%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   ++   +G DD + KP    E+ AR+ A+ RR +  + +A+    
Sbjct: 81  ETPVLVMSALSDVDHRVEGLRAGGDDYLAKPFSLVELSARIDALMRR-RPRHAKAQAVLR 139

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            GP+ +    R    +     L   E R+LE++M + G+ + +T IF A++G  FD    
Sbjct: 140 AGPLELDLIRRKVRHRAHELDLLPTEFRVLEFMMRHAGRVLTRTMIFEAVWGCRFDPGT- 198

Query: 187 ENVVESHISKLRKKLRNKLGFDPV 210
            N+++ H+ +LRKK+ N  G  P+
Sbjct: 199 -NLIDVHVGRLRKKV-NVPGEQPM 220


>gi|148283363|gb|ABQ57263.1| AdeR [Acinetobacter baumannii]
          Length = 226

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR     KV+
Sbjct: 77  IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKVT 136

Query: 123 NNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N       I + +D     +  E    +  L   E +I+ +++    K   + ++ +  +
Sbjct: 137 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 194

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
            + D    E  V+SH+SKLRKKL  +  F  V
Sbjct: 195 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMV 226


>gi|84625748|ref|YP_453120.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84369688|dbj|BAE70846.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 235

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 3/161 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S VP+I ++        L   + G DD + KP   RE+ ARV A+  R +
Sbjct: 67  LEICRDLRKESAVPVIMVTARVEEIDRLRGVEIGADDYICKPFSPREVAARVQAVLPRHR 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                A    + +  D     V G    L +   R+L  L A  G+  ++      +   
Sbjct: 127 HDPYGAPAPGLHIDEDACRASVDGRALDLTQVAFRLLRTLAAAPGRVCSREHRMGRLSAD 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +V +  V+SH+  LR+KL +  G D V S    GY ++
Sbjct: 187 H-RSVTDRTVDSHVKNLRRKLAD--GEDWVRSVSGAGYRVE 224


>gi|30248676|ref|NP_840746.1| response regulator [Nitrosomonas europaea ATCC 19718]
 gi|30180271|emb|CAD84578.1| possible Response regulators consisting of a CheY-like receiver
           domain and a HTH DNA-binding domain [Nitrosomonas
           europaea ATCC 19718]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 29/223 (13%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L + G+I    D+G            E L  +  E   AI    +  G   L + +++
Sbjct: 22  RGLTQAGHIVSTVDNG-----------REALFRATEESYDAIVLDRMLPGLDGLSILKML 70

Query: 68  RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           RA   + P++ ++    +   ++  ++G DD + KP    E+ AR+  I RR        
Sbjct: 71  RAGGIRTPVLLLTAMTRIADRVEGLENGADDYLVKPFAFSELHARLNVIIRRPAVLEPET 130

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+V +   + G       GR  ++Q        RE  +LE L+ N  + + KT +   +
Sbjct: 131 SLRVLDIELDLGKRIARRGGRRIDLQP-------RELLMLEVLLRNPHRVMTKTMLLERV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  FD   + N+VE+HIS+LR KL      D + + R  GY I
Sbjct: 184 WD-FDFDPQTNIVETHISRLRAKLNADFDQDAIITVRGAGYMI 225


>gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 222

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 8/165 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               VS+     G + +    R   V+G+   L  RE  + +  ++N  +   + ++   
Sbjct: 120 KEVAVSHEVIRAGELVICPKERKVHVEGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 180 VWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 221


>gi|254421179|ref|ZP_05034897.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188668|gb|EDX83632.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 242

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++      
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKTGASG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+       IR+ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVITINNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|163753369|ref|ZP_02160493.1| two-component response regulator [Kordia algicida OT-1]
 gi|161327101|gb|EDP98426.1| two-component response regulator [Kordia algicida OT-1]
          Length = 227

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 8/131 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIRVFSDGRDPEVQGEVF 147
           FD+G DD + KPI  + ++++V A+ RRLK  +  A+    G I +  +    E +G   
Sbjct: 98  FDAGADDYITKPIKPKVLVSKVKALLRRLKSEDENAQILTVGNIVINREEYKIEKEGVEI 157

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            LPR+E  +L  L +   K   + +I   ++G  +  V    ++ HI    +KLR K+G 
Sbjct: 158 ILPRKEFELLSLLASRPEKVFKREEILDKVWG-NEVIVGGRTIDVHI----RKLREKIGE 212

Query: 208 DPVDSKRFLGY 218
           +   + + +GY
Sbjct: 213 NHFKTVKGVGY 223


>gi|58583964|ref|YP_202980.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|188574706|ref|YP_001911635.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58428558|gb|AAW77595.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|188519158|gb|ACD57103.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 247

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 3/161 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S VP+I ++        L   + G DD + KP   RE+ ARV A+  R +
Sbjct: 79  LEICRDLRKESAVPVIMVTARVEEIDRLRGVEIGADDYICKPFSPREVAARVQAVLPRHR 138

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                A    + +  D     V G    L +   R+L  L A  G+  ++      +   
Sbjct: 139 HDPYGAPAPGLHIDEDACRASVDGRALDLTQVAFRLLRTLAAAPGRVCSREHRMGRLSAD 198

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +V +  V+SH+  LR+KL +  G D V S    GY ++
Sbjct: 199 H-RSVTDRTVDSHVKNLRRKLAD--GEDWVRSVSGAGYRVE 236


>gi|325523281|gb|EGD01637.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 240

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 22/198 (11%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQ 85
           EG   LE   W          A+   L+  G   LE+ R  RA ++  P+I  S   S  
Sbjct: 39  EGLRLLEQGGW---------DALILDLMLPGVDGLEICRRARAMTRYTPIIITSARSSEV 89

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDP--- 140
             +   + G DD + KP    E++ARV A+ RR+     ++R + G + +     DP   
Sbjct: 90  HRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRIDAGTLDIAGLSIDPIAR 149

Query: 141 --EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G    L  RE  +L +   + GK  ++  + +A++G   E   E+ V +HI++LR
Sbjct: 150 EASVDGARIDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYRHEGY-EHTVNTHINRLR 208

Query: 199 KKLRNKLGFDPVDSKRFL 216
            K+      DP +  R L
Sbjct: 209 AKIEA----DPAEPVRIL 222


>gi|300705578|ref|YP_003747181.1| DNA-binding response regulator in two-component regulatory system
           with phor [Ralstonia solanacearum CFBP2957]
 gi|299073242|emb|CBJ44601.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Ralstonia solanacearum CFBP2957]
          Length = 275

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 24/169 (14%)

Query: 67  IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------- 118
           + AH++ +P+I +S +   +T +   D+G DD V KP    E+ AR+ A+ RR       
Sbjct: 70  VSAHTRGLPVIVLSRHGDARTKIAALDAGADDYVVKPCDAGELHARIRAVLRRRAPQQGD 129

Query: 119 --LKVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             L+++  R +   + V +   +G  P       PL   E R+L +L+A+  +  ++TQ+
Sbjct: 130 EILQINGLRLDPLTLGVTAQTDEGVRP------IPLSPLEFRLLHFLVAHPQRVHSRTQL 183

Query: 174 FSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G  +F   V E  V+ H+ KLR  L   L    +++ R  GY +
Sbjct: 184 LDRVWGNHVF---VGERTVDVHVRKLRVALEGTLCDGLIETVRGGGYRL 229


>gi|298256331|gb|ADI71440.1| putative transcriptional regulator [Amycolatopsis orientalis subsp.
           vinearia]
          Length = 225

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 16/153 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR     P+I  ++  +    +    +G DD ++KP    E++AR+ A+ RR++
Sbjct: 58  FEVCRRIRNARDAPIIAFTERGTEADRVLGLRAGADDCLDKPCGFWELMARIEAVTRRVR 117

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               RA +       GP+R+ +  R   + G    + R+E  +L  L +  G   ++ ++
Sbjct: 118 ---GRAGSDGSLVVRGPLRIDATTRRVRLGGASIEMTRKEFDLLYRLASEPGVVFSRRRL 174

Query: 174 FSAIYG-----LFDEAVEENVVESHISKLRKKL 201
            + I+G       D  V    +++H+S LR+KL
Sbjct: 175 MAEIWGDPMTHTADTKVSRT-IDTHVSVLRRKL 206


>gi|293603411|ref|ZP_06685838.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818184|gb|EFF77238.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGP 130
           + P++ ++   +LQ  +   + G DD + KP    E+ AR+ A+ RR +   + R + G 
Sbjct: 72  RTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVRRSRGRQHPRLQCGS 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +   S+ R   + G +  L  RE   L  L+   G  V K+Q+F  ++   D     + +
Sbjct: 132 LSYDSESRAFTLDGSLLFLTPREHAALAALLTRSGYPVDKSQLFGKVFT-HDSEANPDAI 190

Query: 191 ESHISKLRKKL 201
           E  + +LRKKL
Sbjct: 191 EVVLHRLRKKL 201


>gi|291556880|emb|CBL33997.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 223

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  S+VP+I +S        +   + G DD + KP     + A++ A+ RR    S N 
Sbjct: 67  IRKLSKVPVIFLSSASDNMNVVMAMNMGGDDFIAKPFDLSVLTAKINAVLRRAYSFSGNS 126

Query: 126 AETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  V  D     V    +   L + E RIL  LM N G+ +++  +   ++   D 
Sbjct: 127 DLISHGSVILDISSAVVTNGDKKAELTKNELRILRTLMENAGRIISRDTLMQRLWET-DC 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++EN +  ++S+LRKKL N    + + +K  +GY I
Sbjct: 186 FIDENTLTVNVSRLRKKLENIGLENYITTKVGMGYMI 222


>gi|259418415|ref|ZP_05742333.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
 gi|259345810|gb|EEW57654.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
          Length = 230

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 18/198 (9%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLELPRII 67
           A+ K G+  LF  DG++            + +  +ED   I    IG  E   LE+ R I
Sbjct: 21  AVEKAGFETLFASDGLA-----------AINAQQQEDPDLI-VLDIGLPEMDGLEVCREI 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSN 123
           R  S+VP++ ++        +   + G DD + KP   RE++AR+ AI +R     K S+
Sbjct: 69  RKISEVPILFLTARDEEIDRILGLELGADDYLTKPFSPRELVARIKAILKRSVSAPKPSD 128

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G + + ++            L   E R+L  LM      + + Q+  A+YG ++ 
Sbjct: 129 AAVIHGALHLDAERHQCTFNDTSVSLTGSEFRLLATLMIRPDHVLTRAQLVDALYG-YNI 187

Query: 184 AVEENVVESHISKLRKKL 201
            V +  ++SHI  +R KL
Sbjct: 188 HVSDRTIDSHIRNIRAKL 205


>gi|229073271|ref|ZP_04206423.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228709846|gb|EEL61868.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 238

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 12/167 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR   Q+P++ +S        +     G DD + KP    EI+ARV A  RR   
Sbjct: 63  QLIKKIRETLQLPILILSAKSQEVDKIIGLGIGADDFITKPFSALEIIARVQAHLRRSYE 122

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N++A          G + +  +        E   L   E +IL   M   G+   K QI
Sbjct: 123 FNDKAVEGKEKQIHMGDLVLDHNSCTLYKSSESISLSATEYKILTLFMEEPGRIFTKKQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK--RFLGY 218
           F +++  +    ++N +  HIS+LR+KL +    +PV  K  R LGY
Sbjct: 183 FESVWSDY-YCADDNTIMVHISRLREKLEDSPK-NPVYIKTIRGLGY 227


>gi|226309596|ref|YP_002769490.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092544|dbj|BAH40986.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 10/220 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   ++    A    +G       S E    L+     D+  ++  L G      E 
Sbjct: 8   IVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGMNG--YEF 65

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R IRA S+ P+I +S        +   + G DD + KP   RE++ARV    +R K   
Sbjct: 66  CRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWKQMK 125

Query: 124 NRAETGPIRVFSDGRDPEVQ---GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + AE   I      ++  +    GE   +  +E ++L  L  +  +  ++ ++ S I+G 
Sbjct: 126 SHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELLSLIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD    + VV+  I ++RKKL +K+   P+++    GY +
Sbjct: 185 FDYFGSDRVVDDLIRRIRKKL-DKI---PLETVWGFGYRL 220


>gi|206970362|ref|ZP_03231315.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734939|gb|EDZ52108.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 220

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I +++  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 57  EICRQIRLVKTTPIIIVTNNISSEDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDY 116

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 117 -NQQNETNFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 176 VWG-YDVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 218


>gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 245

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV---- 121
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+ KV    
Sbjct: 74  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKVGASG 133

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+       I++ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 134 IPSSGVIHVASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 193

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 194 YTPERHVDTRVVDVHISRLRAKLED 218


>gi|56540659|gb|AAV92783.1| PmrA [Salmonella enterica]
          Length = 222

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRR--- 118

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            NN+ E+    G + +        + G+   L  +E  +L  LM   G  V +  +++ I
Sbjct: 119 HNNQGESELAVGNLTLNMGRHQAWMDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYML 216


>gi|70731371|ref|YP_261112.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68345670|gb|AAY93276.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 222

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R  RA     P++ ++   S    ++   +G DD ++KP H  E+  RV A+ RR 
Sbjct: 60  LEVLRKWRADGLATPVLVLTARGSWAERIEGLKAGADDYLSKPFHPEELHLRVQALLRRS 119

Query: 120 KVSNNRAETGPIRVFSD-GRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               N+       +  D GR   V+ G+   L   E R+L Y M +  + ++K+ +   +
Sbjct: 120 HGQANQQTLQAAGLHLDEGRQCVVRDGQDVLLTAAEFRLLRYFMLHPQQILSKSHLAEHL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           Y    E  + NV+E H++ LR+    KLG   ++++R  GY
Sbjct: 180 YDGETER-DSNVLEVHVNHLRR----KLGRSVIETRRGQGY 215


>gi|86132460|ref|ZP_01051054.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
 gi|85817021|gb|EAQ38205.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
          Length = 227

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 8/131 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVF 147
           FD+G DD + KPI  + +L++V A+ RR K     +   + G + +  +        E  
Sbjct: 98  FDAGADDYITKPIKPKVLLSKVKALLRRFKNEEAPSQITKVGKLIINREEYKVFKGKEEL 157

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            LPR+E  +L  L +  GK   +  I   ++GL +  V    ++ HI    +KLR K+G 
Sbjct: 158 SLPRKEFELLSLLTSKPGKVFTREDILDKVWGL-EVVVGGRTIDVHI----RKLREKIGD 212

Query: 208 DPVDSKRFLGY 218
           +   + + +GY
Sbjct: 213 ESFKTVKGVGY 223


>gi|110639416|ref|YP_679625.1| two-component response regulator [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282097|gb|ABG60283.1| two-component response regulator [Cytophaga hutchinsonii ATCC
           33406]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 107/214 (50%), Gaps = 20/214 (9%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY     ++G+ ++E     E +++L      D+   +   +    K+ E+P++  
Sbjct: 24  LTKEGYDVRTANNGLKAIE-----EAKDFLPQLILMDIMMPKMDGVESCRKIREIPKLKE 78

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           ++    +I ++      + +  F++G DD + KPI  R +++RV+A +RR   + N  E+
Sbjct: 79  SY----IIFLTARSEEFSEIAAFEAGADDFITKPIKPRALISRVSAFFRRGTKNTNEKES 134

Query: 129 GPIR--VFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEA 184
             I+  V        ++G +   LP++E  +L Y +ANR   V  + ++   I+G  D  
Sbjct: 135 VVIKDLVIDRSSYTVMKGPDKIILPKKEFELL-YFLANRPNTVFNRDELLKNIWGT-DVY 192

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           V    V+ HI    +K+R K+G D + + + +GY
Sbjct: 193 VVPRTVDVHI----RKVREKIGEDYITTIKGIGY 222


>gi|324997388|ref|ZP_08118500.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 227

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 10/150 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R IRA S+VP++ ++    +   +    +G DD + KP    E++ARV A+ RR K
Sbjct: 58  LDVCREIRAVSEVPVLMVTARGEVTDRIAGLHTGADDYLVKPYDIGELVARVHAVQRRRK 117

Query: 121 VSNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V ++             G +R+  +     V GE   L R+E ++L  L    G    + 
Sbjct: 118 VRDDGTAAPAGAAPVAVGDVRIDPERHAVTVAGEEVVLTRKEFQVLALLARADGAVCTRA 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           QI + ++G    A     ++ H++ LR KL
Sbjct: 178 QIVAEVWG-RGWAGANRTLDVHVATLRTKL 206


>gi|315651506|ref|ZP_07904527.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315486241|gb|EFU76602.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 232

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 22/156 (14%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ + IR  S++P+I ++   +    +   + G DD + KP +  E+ AR+ AI RR  
Sbjct: 62  MEVCQAIREFSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNS 121

Query: 119 ------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                       +++S+ + +    RVF   +D E+      L  +E  ILE L  N  K
Sbjct: 122 KKSKSVDKNERIIEISDLKLDLDSRRVFE--KDKEIN-----LTAKEFDILELLTQNPDK 174

Query: 167 RVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKL 201
             ++ Q+ S ++G    EA +   V+ H+ +LR+K+
Sbjct: 175 VYSREQLLSIVWGNKLHEAGDVRTVDVHVRRLREKI 210


>gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13]
          Length = 233

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 19/218 (8%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY      DG   E  N +E         R D+  ++  L  +    +E+ R +R 
Sbjct: 22  LQKEGYEVYCAYDGE--EAVNKVE-------EVRPDLILLDIMLPQRDG--MEVCREVRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127
             ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR +      E  
Sbjct: 71  KYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQKAADTEEP 130

Query: 128 ----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G + +  D      +G++  L  RE  +L YL  + G+ + +  +   ++G +D 
Sbjct: 131 SEIAIGSLVIHPDAYMVTKRGDMIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-YDY 189

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 190 YGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 227


>gi|309812926|ref|ZP_07706654.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
 gi|308432998|gb|EFP56902.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
          Length = 225

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61
           +L++D   + D   +  G +G  ++        +WL +    DV  ++  L G+ G  VL
Sbjct: 4   LLVEDEKHLADAVASGLGREGFVVDVAGDGITGQWLGAQNPYDVIVLDIMLPGRNGYDVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R  R     P++ ++        +D FD G DD + KP     ++AR+ A+ RR   
Sbjct: 64  AGLR--RDGVWAPVLMLTAKDGDLDQVDAFDLGADDYLTKPFSFPVLVARLRALARRGAP 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                           R   ++G+V   L  +E  +L YL    G+  +K +I   ++G 
Sbjct: 122 ERPTVLDVGGLTIDPARHVVMRGDVEISLTAKEFALLLYLARRGGEPASKPEILDNVWGA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E   +NVVE ++  LR+K+    G   +++ R  GY +
Sbjct: 182 DFEG-NDNVVEVYVGYLRRKIDAPFGTASLETVRGHGYRL 220


>gi|309789803|ref|ZP_07684382.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308228107|gb|EFO81756.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 232

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   +    +G +++          L  + R D+  ++  L   G   +
Sbjct: 6   ILVVDDEQPIVDLVASYLAAEGFAVQRAYDGPSALTLARACRPDLVILDVML--PGLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +   + V ++ ++        L     G DD + KP   RE++ARV AI RR + 
Sbjct: 64  EVCRRLHQETAVYVLMLTARTDEVDKLIGLSVGADDYLTKPFSPRELVARVKAILRRTRA 123

Query: 122 SNNRAETGPIRVF-SDGRDPE----VQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +    P  +F S   DPE     +GE+   L  RE  +L  L +  G+   + ++  
Sbjct: 124 PAGKTNERPSLIFDSLSIDPERREVKRGELQIELTPREFDLLYALASYPGRVFTREELLQ 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++G  D A  + VV+ H+  LR+KL +      V + R +GY
Sbjct: 184 RVWGA-DFAGIDRVVDVHVGTLRRKLEDDGDASYVQTVRGVGY 225


>gi|295693701|ref|YP_003602311.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031807|emb|CBL51286.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
           +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR   +V N 
Sbjct: 67  VRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQKQVKNE 126

Query: 125 RA---ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179
           +    E GP+ +  D  + + + G+   L   E  IL YL+A+   RV +  +IF  ++ 
Sbjct: 127 KPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 186 Q-ESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227


>gi|259046372|ref|ZP_05736773.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259037009|gb|EEW38264.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 220

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G      + G ++  F + +  E L+   RE V  I   ++   +   
Sbjct: 5   LLIVEDEEAIREGVREFLSEQGFTV--FEACDGVEALEVFNRESVDLILLDIMMPRKNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S VP++ ++     +T +  F+  VD  + KP     +  R+ A+ +R   
Sbjct: 63  EVLEEVRQKSNVPILMLTALQDEETQVKSFELLVDGYIQKPFSLMVLYKRIEALLKRHYG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      V     +  V  ++  +  +E  IL+ L+ + G+ ++++QI   ++   
Sbjct: 123 EVETWSYQDTSVNFTRFEAYVNNQLVEVTAKELSILKLLVKHEGQALSRSQILDHVWSNH 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   + VV+ +I +LRKKL+     D + + + +GY ++
Sbjct: 183 EDPPFDRVVDVYIKQLRKKLK----LDCIVTIKNVGYKLE 218


>gi|254293636|ref|YP_003059659.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254042167|gb|ACT58962.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 223

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 8/132 (6%)

Query: 91  FDSGVDDVVNKP-IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           FD+G DD + KP I    +    A + R    +++  E G +RV +      V G+   L
Sbjct: 91  FDAGADDYLTKPFITEELLARLRALLRRSAGHASSALELGDLRVDTSSARATVGGQPIKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
              E R+L Y+M  +G+ V +T++   IY   FD   + N +E  + +LRK    K+G D
Sbjct: 151 TAHEYRVLSYMMHYQGRVVPRTELVEHIYDQDFDR--DSNTIEVFVGRLRK----KIGSD 204

Query: 209 PVDSKRFLGYSI 220
            + ++R LGY +
Sbjct: 205 RILTERGLGYRL 216


>gi|253682442|ref|ZP_04863239.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562154|gb|EES91606.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 10/143 (6%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRA 126
           +S++P+I +S    +   L     G DD + KP   RE++ R+ AI RR+   K++ N  
Sbjct: 70  NSEIPIIVLSAKNQINDKLLGLQLGADDYITKPFDSRELILRIRAISRRINKVKLTTNNK 129

Query: 127 ET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ET      G I++    R   +  +       E  IL  ++ N  K   + ++   I+G 
Sbjct: 130 ETKKIIEKGFIKIMLLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTREELLDKIWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
           +D +     V+ HI ++RKKL N
Sbjct: 189 YDFSGNTRAVDIHIKRIRKKLLN 211


>gi|242237847|ref|YP_002986028.1| DNA-binding transcriptional regulator BasR [Dickeya dadantii
           Ech703]
 gi|242129904|gb|ACS84206.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 222

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 105/219 (47%), Gaps = 9/219 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D AL+++G +    ++G + +   + +  + L +SA   +  ++  L  G G  +
Sbjct: 3   LLIVEDDALLQEGLLQAMRNEGYTCDCATTAKEADALINSAHYSLIVLDLGLPDGDGLTL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R    HSQ P++ ++   ++   +   + G DD + KP    E+LAR+ A+ RR +
Sbjct: 63  LTRWRN-NQHSQ-PVLILTARDTVDERVTGLNIGADDYMIKPFALSELLARIRALIRRHQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S N  +   I +  + +   +  +   L  +E  IL  L+   G +V +  +   IY 
Sbjct: 121 GSSENLIQVDNITLDLNSQQVMLDSKPVILTPKEFAILSRLILKAGSQVHREVLHQDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +D+    N +E HI  LR+    K+G + + + R  GY
Sbjct: 181 -WDDDPSSNSLEVHIHNLRQ----KIGKNRIKTLRGFGY 214


>gi|229029708|ref|ZP_04185781.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228731596|gb|EEL82505.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 232

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP    E+ AR+ ++ RR++V + +A T   GP  +          G++  L 
Sbjct: 98  GADDYIAKPFSPVELTARIQSLLRRIEVHDEKANTIISGPFSLNVIEERLYKSGQLVDLT 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E  IL+YLM    K V++ +I + I+G  +   E  VV+ ++ +LR+K+
Sbjct: 158 PTEYMILQYLMNQASKPVSRDEILNMIWGT-NYVGETKVVDVNMRRLRQKI 207


>gi|163736445|ref|ZP_02143864.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
 gi|163743309|ref|ZP_02150690.1| phosphate regulon transcriptional regulatory protein PhoB
           [Phaeobacter gallaeciensis 2.10]
 gi|161383497|gb|EDQ07885.1| phosphate regulon transcriptional regulatory protein PhoB
           [Phaeobacter gallaeciensis 2.10]
 gi|161390315|gb|EDQ14665.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
          Length = 229

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R ++  ++   +P+I +S        +   ++G DD V KP    E++ARV    R
Sbjct: 65  IEVCRRLKTRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLR 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFS 175
           R++ S          +  D    +V     PL     E R+L   M   G+  ++ Q+  
Sbjct: 125 RVRPSTVGVRLEFDDIILDAETHKVSRAEAPLKLGPTEFRLLSTFMEKPGRVWSREQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 185 RVWG-RDIYVDTRTVDVHIGRLRKALTQHGGSDPVRTVRGAGYAL 228


>gi|83716332|ref|YP_438576.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|167576884|ref|ZP_02369758.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           TXDOH]
 gi|167615059|ref|ZP_02383694.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           Bt4]
 gi|257141635|ref|ZP_05589897.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|83650157|gb|ABC34221.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
          Length = 230

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 105/222 (47%), Gaps = 27/222 (12%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           R L + G++  +  DG+S  G + L+ E +       D++ ++  L G  G  V+   R 
Sbjct: 18  RGLTEAGFVCDWTQDGIS--GLHQLQTENY-------DLAILDVMLPGCDGWTVV---RE 65

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R   + P++ ++    +   +   + G DD + KP    E+LARV ++ RR + S+   
Sbjct: 66  LRRTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRRGQSSD--- 122

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              P+   ++       R    QG    L  +E  +L  LM  +G+ + ++ I S I+ +
Sbjct: 123 --APVLRVANLELDLVQRKARRQGSTILLTSKEFLLLWLLMRRQGEILPRSLIASQIWDI 180

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   + NVV++ I ++R K+        + + R +GY ++
Sbjct: 181 NFDS--DSNVVDAAIKRVRAKVDQDYEPKLIHTVRGMGYVLE 220


>gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR  S +P+I +S        +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRKISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYEH 124

Query: 120 KVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K S+ +    P  + +      +V G+    P +E  +L +L +N  K   + Q+   ++
Sbjct: 125 KDSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D   +   V+ HI +LR+KL
Sbjct: 185 G-YDFYGDSRTVDVHIKRLREKL 206


>gi|322386034|ref|ZP_08059674.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321270017|gb|EFX52937.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP++ +S        +   + G DD V KP  +   LA+V  + RR        
Sbjct: 67  IRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYEFGTDQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + +     D   +GE+  L + E +IL  L  + G  VA+  +   ++   D 
Sbjct: 127 SLLEYQGVILNLKSMDLVYEGELVTLTKNEFQILRVLFEHSGSIVARDDLMKELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL        +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEEHGLKHFIETKKGIGYGL 222


>gi|228951584|ref|ZP_04113689.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229149424|ref|ZP_04277660.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634066|gb|EEK90659.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228808149|gb|EEM54663.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 234

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 21/230 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 7   LLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNNYDLIILDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR   
Sbjct: 65  DICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                E  P  + S GR        +  V G +     +  ++L +   N     +K +I
Sbjct: 125 QTVPHEQKPHSI-SFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +  ++G      ++N V  HI KLR+K+ +    DP     + + R LGY
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEH----DPSKPEYIKTVRGLGY 229


>gi|225388663|ref|ZP_03758387.1| hypothetical protein CLOSTASPAR_02399 [Clostridium asparagiforme
           DSM 15981]
 gi|225045261|gb|EEG55507.1| hypothetical protein CLOSTASPAR_02399 [Clostridium asparagiforme
           DSM 15981]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 19/169 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + +R    +P++ +S   +L   L+ F  G DD + KP    E LARV A+ RR  
Sbjct: 63  MELLKTLRDLKPMPILILSTSSALADKLEAFKVGADDYLTKPFETEECLARVYALLRRF- 121

Query: 121 VSNNRAETGPIRVFS-----------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
              N  +T   RV+S             R   + G    L  RE  +L   M++  +   
Sbjct: 122 CDLNHLKT---RVYSIVAHDDLIIKRHTRQALISGRPLELTYREYELLNLFMSHPERVYT 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             Q++  ++        +N V   + +LRKKL +    DP+++ R +GY
Sbjct: 179 FEQLYEQVWT-EPYMGNKNSVVCEMKRLRKKLGDT---DPIEAVREVGY 223


>gi|163804112|ref|ZP_02197895.1| transcriptional regulator [Vibrio sp. AND4]
 gi|159172074|gb|EDP57030.1| transcriptional regulator [Vibrio sp. AND4]
          Length = 220

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ V  LP   +    VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  
Sbjct: 57  GDSVQSLPEW-KKIKDVPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQL 115

Query: 117 RRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R    ++    ++ +T  + +    R+ + + E+  L R E  +L +L +N G+   + +
Sbjct: 116 RAPDSADQDNSDKVKTADLEINRATREVKFKEEMITLTRTEFDLLLFLASNLGRVFTRDE 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 176 LLDHVWG-YNHFPTTRTVDTHVLQLRQKLP---GLE-IETLRGVGYKM 218


>gi|149926517|ref|ZP_01914778.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Limnobacter sp. MED105]
 gi|149824880|gb|EDM84094.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Limnobacter sp. MED105]
          Length = 221

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 22/170 (12%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + IRA ++ +P + +S    L   +   D G DD + KP    E+ AR+ A+ R  
Sbjct: 60  MDVLKAIRASNNPIPALIVSARDQLSDRIQGLDHGADDYLLKPFEMAELFARIRAVVR-- 117

Query: 120 KVSNNRAETGPIRVFSDG---RDPE------VQGEVFPLPRRERRILEYLMANRGKRVAK 170
                R   G   V  +G    DP       V  E   L  RE  +L  L+   G  +++
Sbjct: 118 -----RKSGGAAPVLGNGILNLDPSTRQAWRVDLEPVQLSNREYALLHALLIRPGAILSR 172

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   +YG + E VE N +E  I  LRK    KLG D + + R +G+ +
Sbjct: 173 ADLEDRVYG-WGEEVESNAIEFLIHALRK----KLGADSIKNVRGVGWMV 217


>gi|153832803|ref|ZP_01985470.1| transcriptional regulator [Vibrio harveyi HY01]
 gi|148870937|gb|EDL69827.1| transcriptional regulator [Vibrio harveyi HY01]
          Length = 220

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ V  LP   +    VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  
Sbjct: 57  GDSVQSLPEW-KKIKDVPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQL 115

Query: 117 RRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R    +     ++  T  + +    R+   +GE+  L R E  +L +L +N G+   + +
Sbjct: 116 RAPDAAEQGNADKVMTKDLEIDRATREVVFKGEMITLTRTEFDLLLFLASNLGRVFTRDE 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 176 LLDHVWG-YNHFPTTRTVDTHVLQLRQKLP---GLE-IETLRGVGYKM 218


>gi|159037318|ref|YP_001536571.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157916153|gb|ABV97580.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 229

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 12/158 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---N 124
           R  SQ+ +I ++     +  +    +G DD V KP    E+ AR+ A+ RR   +    N
Sbjct: 76  RRSSQLGIIAVTARGEERDRVLGLRAGADDYVVKPFSMVELQARIEAVLRRAAQAAPEPN 135

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E GP+ +    R   V G    L R+E  +L  L    G  VA+ +I    +G     
Sbjct: 136 LIEVGPVHIDVSARTVRVHGREVALTRKEFDVLLSLARQPGAAVARDRILLDAWG--TTF 193

Query: 185 VEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            + + VE H+  LR KL      DP  V++ R +GY +
Sbjct: 194 ADRHTVEVHVGSLRGKL-----GDPRLVETIRGVGYRL 226


>gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 7/116 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP---EVQG--E 145
            + G DD + KP + RE++ARV AI RR +      +   IR+ +   DP   EV+    
Sbjct: 94  LELGADDYMTKPFNPRELVARVKAILRRTR-HQTHEDQNVIRIGNIVVDPARYEVRNGDY 152

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + PL  +E  +L  L  N G+ +++ Q+    +G FD   +   V+ HI++LR+KL
Sbjct: 153 LIPLRAQEFEVLCVLARNAGRVLSREQLLEKAWG-FDFYGQTRTVDVHIAQLRRKL 207


>gi|300172950|ref|YP_003772116.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Leuconostoc gasicomitatum LMG 18811]
 gi|299887329|emb|CBL91297.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Leuconostoc gasicomitatum LMG 18811]
          Length = 229

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 7/116 (6%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA------ETGPIRVFSDGRDPEVQGEVF 147
           G DD + KP   RE+LAR+ A+ RR +   + +      E   I +  + +     G+  
Sbjct: 95  GADDYITKPFSLREVLARLKAVLRRSQTERSTSDKPDVIEIQDIVIDDNKKVVTKSGKNL 154

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            L  RE  +L Y     G+ + +  I +A++G ++   E  +V+ HIS LR+K+ N
Sbjct: 155 TLTPREYELLLYFSQRVGRVIDRETILTAVWG-YEFVGESRMVDMHISNLREKVEN 209


>gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 223

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 14/155 (9%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR        + G   
Sbjct: 73  TPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRR-----GAKDRGAEI 127

Query: 133 VFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAV 185
            F+D R   V  +V+       L  +E  +LEY M N  + + +T I   ++   FD   
Sbjct: 128 YFADLRLDPVTHKVWRADKEIDLTAKEYGLLEYFMRNPNQVLTRTMIAEHVWDYTFDSFT 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             N+++ +++ LRKK+        + + R +GY +
Sbjct: 188 --NIIDVYVNYLRKKIDKDYSKKLIHTIRGVGYVL 220


>gi|78183890|ref|YP_376324.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|116071497|ref|ZP_01468765.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|78168184|gb|ABB25281.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
 gi|116065120|gb|EAU70878.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 248

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 26/165 (15%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR        
Sbjct: 74  LRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKEAIAG 133

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++VS+ R +T   +VF +     + G  F L       LE L++  G+   + +
Sbjct: 134 IPNSGVIQVSDLRIDTNKRQVFRNDERIRLTGMEFSL-------LELLVSRSGEPFNRGE 186

Query: 173 IFSAIYGLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           I   ++G   E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 187 ILKEVWGYTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 227


>gi|78065919|ref|YP_368688.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77966664|gb|ABB08044.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 233

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 17/160 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 76  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVAIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--L 180
             R +    RV +     E++ ++ P    E R+L + M +  +  ++TQ+   ++G  +
Sbjct: 136 GLRLDPATHRVAAHAEGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWGDHV 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F   VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 193 F---VEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|46198951|ref|YP_004618.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55980971|ref|YP_144268.1| response regulator [Thermus thermophilus HB8]
 gi|46196575|gb|AAS80991.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55772384|dbj|BAD70825.1| response regulator [Thermus thermophilus HB8]
          Length = 240

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 4/129 (3%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIR 132
           P++ ++   +L+  +   D G DD + KP H  E+LARV A+ RR  +V  +R   GP+ 
Sbjct: 97  PILFLTARDALEDRVQGLDLGGDDYLVKPFHLEELLARVRALLRRASEVKASRVRLGPLE 156

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   + G    L  +E  +LE L+ + G+  A  ++   ++G   +  +   V+ 
Sbjct: 157 VDLAGRGVYLAGRRVDLSLKEFALLETLLLHPGRVFAPEELAERVFG---DPEKVGAVKV 213

Query: 193 HISKLRKKL 201
           ++  LR+KL
Sbjct: 214 YVHYLRQKL 222


>gi|163942811|ref|YP_001647695.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865008|gb|ABY46067.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKTTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  N       + +F D     V+  G+   L +RE  +L +L+ N+   +++  + + +
Sbjct: 122 IQQNETNFFQFKDLFVDASSHIVKKGGKNLTLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G ++  V  NVV+ +I  +RKKL+
Sbjct: 182 WG-YNVVVNPNVVDLYIGYVRKKLK 205


>gi|114561499|ref|YP_749012.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332792|gb|ABI70174.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 24/231 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            +LIDD   + D    L     + LEGF    + + E+ L  + ++D   I   ++    
Sbjct: 4   ILLIDDDIGLSDLLSQL-----LELEGFVLTQAYDGEQGLMMAQQQDFDLILLDVMLPKL 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R +R   Q P++ ++        +   + G DD + KP + RE++AR+ AI RR
Sbjct: 59  NGFEVLRALRQRKQTPILMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAILRR 118

Query: 119 LKVSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + +   ++   +  F D R DP  Q      ++  L   E  +L +L+   G+ V K  
Sbjct: 119 AQTTQQDSQANEMMQFGDLRLDPTRQETYCNEQLIILTGTEFSLLFHLIEKSGELVTKES 178

Query: 173 IFSAIYGL----FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           +   + G     FD +     ++ H+S LRKKL  +    P V + R  GY
Sbjct: 179 LSENVLGKKLMPFDRS-----LDMHLSNLRKKLPERQDGRPRVKTLRGKGY 224


>gi|330820188|ref|YP_004349050.1| two component transcriptional regulator, winged helix family
           [Burkholderia gladioli BSR3]
 gi|327372183|gb|AEA63538.1| two component transcriptional regulator, winged helix family
           [Burkholderia gladioli BSR3]
          Length = 227

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 6/150 (4%)

Query: 57  GEKVLELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G+  +E+ R +R    +Q+P++ ++ +      +   D+G DD + KP+  RE++ARV A
Sbjct: 56  GKSGIEVMRWVREQFGAQLPIVMMTQHDGEDDIVHGLDNGADDYLVKPLRERELVARVNA 115

Query: 115 IYRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             R+         R E G   + +      + G    L +RE  +   L  N G+ V+K 
Sbjct: 116 QMRKYYPQAGQGRRIEIGRFVIDAAEHVARIDGRAVELSQREFELALMLFENVGRIVSKD 175

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +   I+G  D   +  +  +++SKLR  L
Sbjct: 176 ALIKRIWGGVDRRYDATLA-TYVSKLRSGL 204


>gi|300855751|ref|YP_003780735.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435866|gb|ADK15633.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 229

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 85/166 (51%), Gaps = 9/166 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S VP+I +S   S    +   ++G DD + KP  +  ++A++  + RR+  S +
Sbjct: 65  RDIRTISNVPIIFLSARNSDMDQVMAIENGGDDYITKPFSYDVLIAKIKGVIRRVYGSYS 124

Query: 125 RA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      E+  + ++ +    E + +   L ++E ++L  L+ N  K V++  +   ++
Sbjct: 125 ESSLSEIFESNGLFLYLNQNVVEYKSKKVELSKKEFQLLYSLLKNENKIVSRESLLEVLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DW 222
              D  V++N +  +++++RK+L      + +++KR  GY I  +W
Sbjct: 185 NDVD-FVDDNTLSVNMTRVRKRLEEIGITNVIETKRGQGYKIVPNW 229


>gi|289578186|ref|YP_003476813.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527899|gb|ADD02251.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 16/152 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAETGPIRVFSDGRDPEV----------QGEVFPLPRRERRILEYLMANRGKRVAKT 171
               AE     V S   D  V          +G V  L   E +IL++L+ N  +   + 
Sbjct: 123 DVPLAE-----VISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIHNPNRVFTRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++   + G FD    +  +++HI  LR+K+ +
Sbjct: 178 ELIEKVMG-FDYEGYDRTIDAHIKNLRQKIED 208


>gi|302540139|ref|ZP_07292481.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302457757|gb|EFL20850.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 223

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 10/165 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE  R +R  S VP+I ++   + +  L     G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LEALRRLRRASAVPVIVVTARAAERDVLRSLRGGADDYLVKPFRTAELIARMEAVVRRGT 117

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L  +      G +R+    R  EV G    L RRE  +L  L    G   ++ +I  A
Sbjct: 118 RPLTAAGPVVAVGGVRIDLATRQLEVDGHPVALTRREFDVLALLAREPGVVRSREEILDA 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           I+G    +   + ++ HI+ +R K  R +L    V++ R  GY +
Sbjct: 178 IWGDLLLSASRS-LDVHIAGIRSKTGRPEL----VETLRGTGYRL 217


>gi|253998767|ref|YP_003050830.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|253985446|gb|ACT50303.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
          Length = 233

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 12/162 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R IR+ S VP+I +S        +   D+G DD + KP    E+LAR+ A  RR  
Sbjct: 64  IDVIRQIRSWSNVPMIVLSARTQEAQKVSALDAGADDYLTKPFGTAELLARIRAQLRRHS 123

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + N A+      G IRV    R       +  L   E R+L  L+   G+ V + Q+  
Sbjct: 124 QAGNAAQESVFTMGDIRVDLVNRQVHRGDALVSLTPIEFRLLATLIRYAGRVVTQRQLLK 183

Query: 176 AIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
            ++G        ++   H  ++    LR+KL  DP   +  L
Sbjct: 184 EVWG------PSHIESGHYVRIYMGHLRHKLEADPAQPRYLL 219


>gi|228991673|ref|ZP_04151613.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228767996|gb|EEM16619.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 215

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 79/158 (50%), Gaps = 15/158 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           I+ +S V ++ ++     +  L    SG D+ V KP H   +L R   +  +   ++V N
Sbjct: 66  IKKNSSVKVLMLTAKSENEDELVALQSGADEYVKKPFHPGILLTRAKKLLNQDEVIQVQN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            + +    +V+   ++ E+        + E  +++  + ++G  + + ++   ++G FD 
Sbjct: 126 LKIDLIKNKVYKSDKELEI-------TKTELELIKCFLNHKGTILTREKLLDIVWG-FDY 177

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +E  V++H+ +LRKK+    G D + + R LGYS++
Sbjct: 178 FGDERTVDTHVRRLRKKI----GEDIIKTHRGLGYSLE 211


>gi|229172695|ref|ZP_04300252.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228610735|gb|EEK68000.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 232

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP    E+ AR+ ++ RR++V + +A T   GP  +          G++  L 
Sbjct: 98  GADDYIAKPFSPVELTARIQSLLRRIEVHDEKANTIISGPFSLNVIEERLYKSGQLVDLT 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E  IL+YLM    K V++ +I + I+G  +   E  VV+ ++ +LR+K+
Sbjct: 158 PTEYMILQYLMNQASKPVSRDEILNMIWGT-NYVGETKVVDVNMRRLRQKI 207


>gi|225572220|ref|ZP_03781084.1| hypothetical protein RUMHYD_00514 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040282|gb|EEG50528.1| hypothetical protein RUMHYD_00514 [Blautia hydrogenotrophica DSM
           10507]
          Length = 224

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 71/141 (50%), Gaps = 1/141 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + +R+ ++VP++ ++   S +  L+ FD+G DD + KP     +  ++  + + +  
Sbjct: 61  EFLKRLRSANKVPVVFLTARDSEKDMLEGFDAGCDDYITKPFPISVLSRKIGLLLKGVAY 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  +    G        ++  +Q     L   E R+LEY + NRG+ + + QI   ++  
Sbjct: 121 LDKSLYYQGDFVYDYAKKELTIQNVPVKLTATELRLLEYFLKNRGQVLTREQILENVWDS 180

Query: 181 FDEAVEENVVESHISKLRKKL 201
           ++  V+E  +  ++ +LR+K+
Sbjct: 181 YENFVDERTLNVNVRRLREKI 201


>gi|222148026|ref|YP_002548983.1| two component response regulator [Agrobacterium vitis S4]
 gi|221735014|gb|ACM35977.1| two component response regulator [Agrobacterium vitis S4]
          Length = 252

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 5/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETG 129
             P++ +S    +   +    +G DD + KP    E+LARV  + RR            G
Sbjct: 99  NTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDMIYRVG 158

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +     +    G+   L  RE R+LEYLM N G+ V +T +   ++   FD   + N
Sbjct: 159 DLELDRLSHEVRRAGKEILLQPREFRLLEYLMKNAGQVVTRTMLLEHVWDYHFDP--QTN 216

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V++ H+S+LR K+        + + R  GY I
Sbjct: 217 VIDVHVSRLRSKIEKDFDRPLLKTVRGAGYMI 248


>gi|217034214|ref|ZP_03439633.1| hypothetical protein HP9810_886g51 [Helicobacter pylori 98-10]
 gi|216943382|gb|EEC22841.1| hypothetical protein HP9810_886g51 [Helicobacter pylori 98-10]
          Length = 225

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R I     +P+I  S    ++  +   D G DD + KP   +E+LAR+ ++ RR  
Sbjct: 61  LEVCRRISKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSH 120

Query: 121 VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +E G   +F    D R+  +  +   L R E  IL  L++ +G   ++  I    
Sbjct: 121 KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI---- 176

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDW 222
             +  E++        I  +  +LR+K+  +P     + S R +GY +++
Sbjct: 177 -AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKLEY 225


>gi|218441192|ref|YP_002379521.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173920|gb|ACK72653.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 227

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 3/156 (1%)

Query: 67  IRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NN 124
           IRA   V P++ ++   S++  +   + G DD + KP    E+LAR+ A+ RR  +  + 
Sbjct: 66  IRAKKNVTPVLLLTAKDSIEDRVKGLNGGADDYLVKPFAFSELLARIRALQRRPPLQFST 125

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             +   +++    R+ +   ++  L   E ++LEYL+ N  + + +TQI   ++ L D  
Sbjct: 126 ILQLEDLKMNLVTREVKRGDKIIDLSPLEFKLLEYLLRNANQVLTRTQIGEQVWDL-DFY 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              NVV+ +I  LR+K+        + + R +GY +
Sbjct: 185 TNSNVVDVYIGYLRRKIDRGFDNQLLHTIRGVGYCL 220


>gi|182414366|ref|YP_001819432.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177841580|gb|ACB75832.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ +I+R   A + +P++ ++   +    +   + G DD V KP   RE++ R+  +  
Sbjct: 62  LEVCKILRRDPATAAIPILMLTAKAAEMDRVLGLELGADDYVTKPYSPRELVLRIKKLLT 121

Query: 118 RLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R K S++   +   G + +        V G    L   E ++LE L   RG+   + ++ 
Sbjct: 122 RTKASDDPLAQLRIGGLEIDVPRHQVTVDGAPVTLTATEFKLLEILARRRGRVQTRDRLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++G +D  ++   V++H+ +LR+KL        +++ R +GY
Sbjct: 182 QDVWG-YDNPIDSRTVDTHMRRLREKLGETASL--LETIRGVGY 222


>gi|167462051|ref|ZP_02327140.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322381463|ref|ZP_08055454.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154570|gb|EFX46853.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 225

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 6/199 (3%)

Query: 27  EGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF  LE ++  ++SA   +E V      ++   +   EL R IR +  +P+I ++    
Sbjct: 23  EGFKVLEAKDGEEASALLEQETVDLAIVDVMMPNKDGYELCREIRRYYDIPVIMLTAKGE 82

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEV 142
           +      + +G DD + KP   +E++ R+ A+ RR   VS++  +     +     +   
Sbjct: 83  IPDKEKGYQAGTDDYLVKPFEPKELVFRIKALLRRFGLVSSDTIQLNNTVIDRKSYEIRC 142

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           + +   LP +E  +L  L +   +   + Q+ S ++G  D   +   V+ HI +LR++  
Sbjct: 143 KDKTLILPLKEFELLSQLASCPDRIFTREQLISLVWGQ-DFTGDARTVDVHIKRLRERFS 201

Query: 203 NKLGFDPVDSKRFLGYSID 221
               F  + + R LGY ++
Sbjct: 202 QTDDF-IITTVRGLGYKLE 219


>gi|160902340|ref|YP_001567921.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359984|gb|ABX31598.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 242

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 15/163 (9%)

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            +L RI+++   +   P++ +S        +   + G DD V KP + RE++AR+ +I+R
Sbjct: 64  FDLIRILKSSEDYRNTPVLILSAKDDAADKVAGLELGSDDYVTKPFNVRELIARIKSIFR 123

Query: 118 RLKVSNNRAETGPIRVFSDGR--DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R   S    E GP ++ +     D E     V G    L   E  +L +L  N GK  ++
Sbjct: 124 RQAASAQMKEEGPKKITAKDLIIDTERLEVWVGGNPVSLTPLEFDLLVFLAKNEGKVFSR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             +   ++G +D   +   V+ HI +LR K+      DP + K
Sbjct: 184 DVLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEE----DPSNPK 221


>gi|126348166|emb|CAJ89887.1| putative two-component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 229

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 11/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DDRA V++G        G  +    + E    L  S R D   ++  L   G   
Sbjct: 4   VLIIEDDRA-VREGVRLALRRQGHEVAAAATGEDGLELLRSFRPDAVILDLML--PGMPG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IRAH QVP+I  +        +   ++G DD V KP+  R + AR+ A+ RR+ 
Sbjct: 61  LEVCRRIRAHHQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARVLDARIRAVLRRVG 120

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + +   T      G + +   G     QG    L   E R+L  L A+ G+  ++ Q+ 
Sbjct: 121 GAPDDHGTTRPEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            A++   +   +  +V++ + +LR K+    G    V + R  GY
Sbjct: 181 EAVWE-HNYHGDARLVDACVKRLRSKIGEPAGRPRYVHTVRGFGY 224


>gi|219847341|ref|YP_002461774.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541600|gb|ACL23338.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 227

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 3/129 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151
           G DD + KP + RE++ARV A+ RR+      NR E G + +  DG    + G    L  
Sbjct: 97  GADDYIVKPFNPREVVARVKAVLRRVSGGTVRNRLEQGSLVLDLDGHQAWLGGNELELTP 156

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
            E  +L   M   G    + ++     G     +E   ++SHI  LRKKL        ++
Sbjct: 157 TEFALLSLFMRYPGHAFTRAELLEQGLGYAATGLERT-IDSHIKNLRKKLEYDPAAPVIE 215

Query: 212 SKRFLGYSI 220
           +   +GY +
Sbjct: 216 TVYGIGYRL 224


>gi|56540665|gb|AAV92786.1| PmrA [Salmonella enterica]
          Length = 222

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHNN 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L V N     G  + + DG++         L  +E  +L  LM   G  V +  +
Sbjct: 122 QGESELTVGNLTLNMGRHQTWKDGQE-------LTLTPKEYALLSRLMLKAGSPVHREIL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ IY  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 175 YNDIYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|77454717|ref|YP_345585.1| putative response regulator [Rhodococcus erythropolis PR4]
 gi|77019717|dbj|BAE46093.1| putative response regulator [Rhodococcus erythropolis PR4]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 67  IRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           IR+ S VP L+G +     +   +   +G   VV +P +    +A  A I       ++ 
Sbjct: 71  IRSRSDVPILVGAAKSGDERIVREVLAAGASAVVARP-YDITTIAPFAGITALSLAEDSV 129

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              GPIRV   G +  V      L +RE  +L YL+  RG   ++++I  A++G    + 
Sbjct: 130 VTAGPIRVNPSGYETRVGNREVQLTQREFELLVYLIKRRGHVASQSEISLAVWG---HSA 186

Query: 186 EENVVESHISKLRKKLRNKLGFD 208
           E N V  H+    K+LR KLG D
Sbjct: 187 ETNTVAVHV----KRLREKLGSD 205


>gi|51894424|ref|YP_077115.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
 gi|51858113|dbj|BAD42271.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
          Length = 232

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 4/144 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSN 123
           IR  S VP+I ++    +   +     G DD + KP   RE+ ARV A+ RR      +N
Sbjct: 71  IREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQVEAN 130

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                G + +    R     G   PL  +E  +L  L A+ G+  ++ ++   I+G  D 
Sbjct: 131 VPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWG-PDF 189

Query: 184 AVEENVVESHISKLRKKLRNKLGF 207
             +   V++HI  LR KL    G 
Sbjct: 190 QGDARTVDAHIKNLRDKLGEGAGL 213


>gi|300857008|ref|YP_003781992.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300437123|gb|ADK16890.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 232

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +L +  R  S++P+I IS   S +  +   + G DD + KP +   +LA++ A  RR+ 
Sbjct: 61  FQLCKTFRRVSKIPVIIISSRSSDEEQIRGIELGADDYIVKPFNFDFLLAKIQAGIRRVY 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 SN     G I++  D            L + E ++L  L+ N  K V++ ++  
Sbjct: 121 GEYANESNILESDGGIKLNKDTFKIFYNQIELELSKNEFKLLNMLIKNENKIVSREELLE 180

Query: 176 AIYGLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
               L+D++  V++N +  +I+++R KL+ KLG  + + +KR +GY
Sbjct: 181 E---LWDDSFFVDDNTLTVNITRIRNKLK-KLGVSEAISTKRGVGY 222


>gi|291542174|emb|CBL15284.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 235

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 20/142 (14%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------TGPIRVFSDGRDPEVQGE 145
           G DD V KP    E+LARV ++YRR+ ++ + +E        +G   +    R     G+
Sbjct: 97  GADDYVTKPFSPSELLARVDSLYRRVALAQSHSENNFKEELKSGEFTLNLRNRALMKSGK 156

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKLRNK 204
           +  L + E +I+EY  +N G  + +  I + ++G  D  V E+ +V+ +I +LR K+ + 
Sbjct: 157 MIELTQVEFQIMEYFFSNPGVALDRIDILNHVWG--DAYVGEDKIVDVNIRRLRMKVED- 213

Query: 205 LGFDPVDSKRF-----LGYSID 221
              +P + K       LGY  D
Sbjct: 214 ---EPSNPKHIITVWGLGYKWD 232


>gi|260770826|ref|ZP_05879755.1| response regulator [Vibrio furnissii CIP 102972]
 gi|260614063|gb|EEX39253.1| response regulator [Vibrio furnissii CIP 102972]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 21/138 (15%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP--------IRVFSDGRDPEVQGE 145
           G DD + KP   RE+LAR+ AI RR   + N  ++ P        ++++   ++   QG+
Sbjct: 93  GADDYLPKPFSDRELLARIRAILRR---TGNHTQSKPTDMIECQDLQLYPGKQEAYCQGQ 149

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
           +  L   E  +L + + N G+ + K  +   + G     FD A     ++ H+S LRKKL
Sbjct: 150 LLDLTTTEFALLTHFVQNPGETLTKEMLSLDVLGKRLAAFDRA-----IDMHVSNLRKKL 204

Query: 202 RNKLGFDP-VDSKRFLGY 218
             +    P + + R  GY
Sbjct: 205 PERSDGKPRIKTLRGRGY 222


>gi|226364471|ref|YP_002782253.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226242960|dbj|BAH53308.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 238

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 11/144 (7%)

Query: 67  IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-- 123
           +RA S  +P+  +S   ++   +   +SG DD + KP    E++AR+ A+ RR   +   
Sbjct: 72  LRAMSNDIPICVLSARDTVDDRISGLESGADDYLVKPFVLAELIARIRAMLRRHGTTTAA 131

Query: 124 --NRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +   T PIRV      +  R   + GE   L +RE  +LE L  N G  +++ ++   
Sbjct: 132 PADSQATPPIRVGALEIRTSARRVFMAGEEVTLTKREFELLEVLARNVGIVLSRERLLEL 191

Query: 177 IYGLFDEAVEENVVESHISKLRKK 200
           ++G +D   + NVV+  +  LR+K
Sbjct: 192 VWG-YDFVADTNVVDVFVGYLRRK 214


>gi|218289584|ref|ZP_03493804.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240234|gb|EED07417.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 233

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR HS VP++ ++        +  F+ G DD V KP   RE++ RV A+ +R   ++ + 
Sbjct: 69  IRQHSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGEMEYAR 128

Query: 124 NRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI--Y 178
           N  +T     + +  D R  EV G+   L  +E  +L Y+     K  ++ ++   +  Y
Sbjct: 129 NAIQTLTFPGLEIQIDARRVEVNGQEVSLTPKEFDLLVYMAQRPDKVFSREELLRDVWNY 188

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
             F    ++  V++HI +LR+KL
Sbjct: 189 QFFG---DQRTVDTHIKRLREKL 208


>gi|152979029|ref|YP_001344658.1| two component transcriptional regulator [Actinobacillus
           succinogenes 130Z]
 gi|150840752|gb|ABR74723.1| two component transcriptional regulator, winged helix family
           [Actinobacillus succinogenes 130Z]
          Length = 226

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 2/130 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAETGPI 131
           VP++ ++   +L   ++    G DD + KP    E++AR+ A I RR   +N   E   +
Sbjct: 73  VPVLILTARDTLDERVNGLQMGADDYLCKPFALAEVVARLQALIRRRYGQANPIIEHSLV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           +   +     ++ +   L  RE ++LE  M N+ + + +  I   +Y  +DE +  N +E
Sbjct: 133 KFDPNNHRVTLRDKEVALTTREYKLLELFMLNKERVLTRAFIEEKLYN-WDEDISSNALE 191

Query: 192 SHISKLRKKL 201
            H+  LRKKL
Sbjct: 192 VHMYNLRKKL 201


>gi|16080092|ref|NP_390918.1| two-component response regulator controlling resistance to
           antibiotics affecting the envelope YtsB [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|41688440|sp|O34951|BCER_BACSU RecName: Full=Sensory transduction protein BceR
 gi|2293175|gb|AAC00253.1| signal transduction regulator [Bacillus subtilis]
 gi|2635524|emb|CAB15018.1| two-component response regulator controlling resistance to
           antibiotics affecting the envelope [YtsB] [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 231

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 17/147 (11%)

Query: 65  RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           R+IR+ S VP++ +S  D+P+ +  ++     G DD + KP H   ++A++ A++RR  V
Sbjct: 65  RLIRSRSNVPILFLSSRDHPADMVMSMQL---GADDFIQKPFHFDVLIAKIQAMFRR--V 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +   E   I+ +        Q  V        L + E  IL+ L+  + K V++ ++  
Sbjct: 120 HHYNTEPSTIKTWCGAAVDAEQNLVSNDKGSVELTKNEMFILKQLIEQKNKIVSREELIR 179

Query: 176 AIYGLFDEA-VEENVVESHISKLRKKL 201
           +++   DE  V +N +  ++++LRKKL
Sbjct: 180 SLWN--DERFVSDNTLTVNVNRLRKKL 204


>gi|93007149|ref|YP_581586.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394827|gb|ABE76102.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 238

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 12/180 (6%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           S + D+  ++  L   G   L + R +R H Q P++ ++        +   + G DD V 
Sbjct: 51  SEQPDLVVLDVML--PGSDGLTVCREVRPHYQNPILMLTARTEDMDQVLGLEMGADDYVA 108

Query: 101 KPIHHREILARVAAIYRRLKVSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           KP   R +LAR+ A+ RR + + +     R E G + + + GR   +  E+      E  
Sbjct: 109 KPAQPRVLLARIRALLRRSENAPSEDVPQRLEFGELVIDNGGRSVNLGDELVDFTSAEYD 168

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +L  L +N G+ +++  IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 169 LLWLLASNAGRILSREDIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 223


>gi|317402481|gb|EFV83049.1| two component response regulator [Achromobacter xylosoxidans C54]
          Length = 243

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGP 130
           + P++ ++   +LQ  +   + G DD + KP    E+ AR+ A+ RR +   + R + G 
Sbjct: 87  RTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVRRSRGRQHPRLQCGS 146

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +   S+ R   + G +  L  RE   L  L+   G  V K+Q+F  ++   D     + +
Sbjct: 147 LSYDSESRAFTLDGSLLFLTPREHAALAALLTRSGYPVDKSQLFGKVF-THDSEANPDAI 205

Query: 191 ESHISKLRKKL 201
           E  + +LRKKL
Sbjct: 206 EVVLHRLRKKL 216


>gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation
           [Bacillus pseudofirmus OF4]
          Length = 241

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 14/141 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRA-----ETGPIRVFSDGRDPE 141
           G DD + KP   RE++ARV AI RR        + +NN       + G + +F +  +  
Sbjct: 96  GADDYMTKPFSPREVVARVRAILRRSAQLSETSEAANNEENGRVIKIGDVEIFPENYEVL 155

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           V  +   L  +E  +  YL  ++G+ + + Q+ +A++  ++   +  +V+ HIS LR+K+
Sbjct: 156 VHKKALELTPKEFELFLYLANHKGRVLTRDQLLNAVWN-YEFVGDTRIVDVHISHLREKI 214

Query: 202 R-NKLGFDPVDSKRFLGYSID 221
             N      + + R LGY ++
Sbjct: 215 EPNTKKPVYIKTVRGLGYKLE 235


>gi|227327873|ref|ZP_03831897.1| two-component system response regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 217

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 11/204 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G++  GFN   F E    +A    +  +A ++      ++
Sbjct: 1   MLIEDDRLIGDGLKA-----GLNKLGFNIDWFMEGKAGAAALKAAPYDAVVLDLSLPGMD 55

Query: 63  LPRIIRAHSQV----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              I+R   Q     P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR
Sbjct: 56  GMDILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRR 115

Query: 119 LKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    T G + +    R   +  E   L  RE  +LE  + N  + + + Q+   +
Sbjct: 116 RHGQLQPTLTHGAVSLEPGSRSVTLNNEPLILKSRELALLELFLLNPSRVLTRAQLEEKL 175

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           YG +D+ V  N VE HI  LRKKL
Sbjct: 176 YG-WDDDVSSNAVEVHIHHLRKKL 198


>gi|167755723|ref|ZP_02427850.1| hypothetical protein CLORAM_01238 [Clostridium ramosum DSM 1402]
 gi|237734689|ref|ZP_04565170.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167704662|gb|EDS19241.1| hypothetical protein CLORAM_01238 [Clostridium ramosum DSM 1402]
 gi|229382017|gb|EEO32108.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 232

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 17/162 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  + +P+I IS     +  ++  D+G DD + KP    E+LAR+  I RRL 
Sbjct: 63  VEIIKKVRTWTNMPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVILRRLN 122

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + ++         G +++   G    +  +   L   E ++L  L  N GK +  T I 
Sbjct: 123 YNQSQNIESSDFVNGDLKIDYAGGCAYLDQQELHLTPIEYKLLCLLSRNVGKVLTHTYIT 182

Query: 175 SAIYGLFDEAVEENVVESHISKLR---KKLRNKLGFDPVDSK 213
             I+G        + +ES ++ LR     LR K+  DP   K
Sbjct: 183 KEIWG--------STLESDVASLRVFMATLRKKIELDPTHPK 216


>gi|75676702|ref|YP_319123.1| two-component transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74421572|gb|ABA05771.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 246

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 12/150 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   +L R +RA S VP+I ++     +  ++    G DD + KP   RE++ R+  I 
Sbjct: 80  GETGFDLARSVRASSPVPIIMLTALHEAENRIEGLQIGADDYLAKPFEPRELVLRIGNIL 139

Query: 117 RR-LKVSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171
           +R + +  +++E+   GP  V+   R    QG +V  L  RER +L  L A  G+ V + 
Sbjct: 140 KRTMPMPTSQSESIAFGPY-VYHLERGELRQGDDVIHLTDREREMLRVLAATPGETVRRG 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +           V E  V+  I++LR+K+
Sbjct: 199 DLNGG------GTVNERAVDVQINRLRRKI 222


>gi|87123222|ref|ZP_01079073.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86168942|gb|EAQ70198.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 256

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 13/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A+I RR+   + 
Sbjct: 75  RRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRIGRGSA 134

Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            AE             G + V ++ R      E   L   E  +LE L    G+ V + +
Sbjct: 135 TAEPREVPVGQGVLRLGDLMVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVPRAE 194

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201
           I   ++G     A +  VV+ ++++LR KL
Sbjct: 195 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 224


>gi|119775831|ref|YP_928571.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768331|gb|ABM00902.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 233

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G    E+ + +R     P I ++    ++  L  F+ G DD + KP+    ++AR+ A  
Sbjct: 60  GTNGFEIAKSLRQSFNGPFIFMTALSDVEDQLQGFNLGADDYICKPVPPPLLVARIKANL 119

Query: 117 RRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +R K    +  +   G + +    R   V G + PL R E  +L  L+ +R ++V++  +
Sbjct: 120 QRHKPQVKTTEKIHYGNLEIDKQRRTVLVGGGLLPLSRYEFDLLWILLEHREEQVSREYL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
           F+   G     ++   V+  IS+LRKKL
Sbjct: 180 FTKTVGREYNGIDR-TVDGRISRLRKKL 206


>gi|325962049|ref|YP_004239955.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468136|gb|ADX71821.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 222

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 8/165 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  + VP++ ++     ++ +    SG DD + KP+   E+LAR+ A+ RR  
Sbjct: 58  LEVLRKLRQVTDVPILILTARDDERSVVLGLRSGADDYLVKPVKLVELLARIEAVTRRAG 117

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   A+     G + V  + R   +   V PL   E  +L  L ++ G  V + QI  A
Sbjct: 118 RAPGNAQRRIVLGELEVDLERRLAVLGAHVLPLTATEFDLLALLASHAGSVVTREQILDA 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G    A   + ++ H++ LR KL+   GF  + + R +GY ++
Sbjct: 178 LWGDAFLASSRS-LDVHLTGLRSKLQLP-GF--IINVRGVGYRVE 218


>gi|228970770|ref|ZP_04131410.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228788895|gb|EEM36834.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 242

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 135

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N   +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 136 TNEHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KAHF-PIDHHLKTVYGVGYRW 237


>gi|228955353|ref|ZP_04117360.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229072574|ref|ZP_04205776.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229082333|ref|ZP_04214796.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229181381|ref|ZP_04308710.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228602117|gb|EEK59609.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228700765|gb|EEL53288.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228710550|gb|EEL62523.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228804329|gb|EEM50941.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 220

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I +++  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 57  EICRQIRLVKTTPIIIVTNNISSEDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDY 116

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 117 -NQQNETNFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 175

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 176 VWG-YDVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 218


>gi|226948916|ref|YP_002804007.1| putative lantibiotic biosynthesis regulatory protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843904|gb|ACO86570.1| putative lantibiotic biosynthesis regulatory protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 219

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRR 152
           G DD + KP    E+ ARV A  RR              +F+        G+V  P  + 
Sbjct: 93  GGDDYITKPFGVGELRARVNAHLRREHREKRHIFVASDIIFNLSSKEIKIGDVKVPFTKG 152

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  I EYL  N G+  +K QI+ A+YG +D   + + +  HI  +R KL+      P+++
Sbjct: 153 EYTICEYLARNSGQVFSKEQIYEAVYG-YDGESDSSAITEHIKNIRAKLK-VFDMSPIET 210

Query: 213 KRFLGY 218
              +GY
Sbjct: 211 VWGIGY 216


>gi|187777708|ref|ZP_02994181.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC
           15579]
 gi|187774636|gb|EDU38438.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 14/207 (6%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N  +    +E L+   RE+V+ +   ++      LE+ +  R    +P++ +S    
Sbjct: 25  EGYNVFKARCGKEALEILEREEVNLMVLDIMMPDMDGLEVCKRAREKYSIPILMLSAKVE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPE 141
               ++   +G DD V KP +H E+  R+ A+ RR    N + +T    IR+ S   D +
Sbjct: 85  DMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFLNTKMQTTDNIIRIESMVIDKK 144

Query: 142 -----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHIS 195
                +      L  RE  IL  L  NRG+  +  +IF  ++   + ++   N V  H+S
Sbjct: 145 QHKVMIDDNEIDLTAREFEILYLLANNRGRVFSAEEIFEKVWKERYYQS--NNTVMVHMS 202

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +LR K+   + G   + +   +GY I+
Sbjct: 203 RLRDKIEKYMEGSKVIHTVWGVGYKIE 229


>gi|153854307|ref|ZP_01995606.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814]
 gi|149753082|gb|EDM63013.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814]
          Length = 242

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 14/218 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           + LVK+ Y      DG  LE  + ++   +       D   ++  L GK G ++L   R 
Sbjct: 36  KRLVKEHYSVDACGDG--LEAMDYIDMTSY-------DGIILDIMLPGKDGYEILRELR- 85

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125
            R     P++ ++   S++  +   D G DD + KP    E+LAR+  + RR  + ++N+
Sbjct: 86  -RREDDTPVLLLTAKDSIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKPQFTSNQ 144

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            +   + +  D R     G    L  +E  +LE LM N+   + + QI    +  FD   
Sbjct: 145 LKIADLILDRDTRKVTRAGNEIDLSAKEFMVLECLMRNKNIVMTRQQIEQNAWD-FDFEG 203

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             NV++ +I  LRKK+  +     + + R +GY +  N
Sbjct: 204 GSNVIDVYIRYLRKKIDAQYEQKLIHTVRGVGYVMREN 241


>gi|118444074|ref|YP_877404.1| two-component response regulator [Clostridium novyi NT]
 gi|118134530|gb|ABK61574.1| two-component response regulator [Clostridium novyi NT]
          Length = 227

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           +P+I +  S +P+I ++    +   +     G DD + KP +  E++ R+    +R+K  
Sbjct: 63  IPKI-KNISDIPIIMLTAKNDINDKILGLQLGADDYITKPFNSTELILRIKIASKRVKKD 121

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + N + E   G +R+    R   +      L  +E  +L YL  N+ K  ++ ++ S ++
Sbjct: 122 IVNEKNEIILGSLRILKKERKLIINSTEVTLTYKEFEVLSYLCENKEKVFSREELLSKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D       V+  I +LRKKL
Sbjct: 182 G-YDFEGTTRAVDILIQRLRKKL 203


>gi|89054505|ref|YP_509956.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864054|gb|ABD54931.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 239

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 11/219 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   +  G +G  +   ++ E    LQ   R+   A+   L   G   L
Sbjct: 5   ILLVEDDTRLAEMVASYLGGNGFDVSRVDTGEKALGLQ--GRQSFEAMILDLNLPGIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++A S +P+I ++        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 63  EVCRHVKAQSALPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAVMRRGQT 122

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S +   T    G +++        V G    L   + +IL  L    G+ +++  +  A+
Sbjct: 123 SPHAGSTPLQFGRLQIDPGAMVARVDGRPCDLTTHQFQILLVLARAAGRVLSRDALMDAL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            G   EA + + ++ H+S++R ++ +    DP   +R +
Sbjct: 183 RGEALEAFDRS-IDVHVSRIRAEIED----DPKHPRRII 216


>gi|15602079|ref|NP_245151.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720438|gb|AAK02298.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 223

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 3/201 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D AL+ +G        G  ++ F   +       SA  D   ++   + K + + 
Sbjct: 3   ILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLD-LTLPKMDGLD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
            L R  +    VP++ ++   +L   +     G DD + KP    E++AR+ A I RR  
Sbjct: 62  ILQRWRKEKYDVPVLILTARDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRYG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++   E   +    + R   ++ E   L  RE ++LE  M N+ + +++  I   +Y  
Sbjct: 122 QASPVIEHSLVCFDPNQRKVFLRQEEVALTTREYKLLELFMLNKDRVLSRRMIEEKLYN- 180

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +D+ V  N +E HI  LR+KL
Sbjct: 181 WDDEVSSNALEVHIYNLRQKL 201


>gi|87119833|ref|ZP_01075730.1| DNA-binding response regulator [Marinomonas sp. MED121]
 gi|86165309|gb|EAQ66577.1| DNA-binding response regulator [Marinomonas sp. MED121]
          Length = 220

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 16/212 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           ++L ++GY   +  DG   +G  +L  E++       ++  +    I        L  I 
Sbjct: 18  KSLTREGYQVDWLMDGK--QGLAALNTEQFDLLLLDLNLPGMGGLDI--------LSAIR 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           +     P++ ++   SL   +   D G DD + KP    E+ AR+ A+ RR    S    
Sbjct: 68  KQQLNTPVLILTANDSLDDKIQGLDLGADDYLPKPFEIAELKARMRALSRRHHGHSEPTI 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + G + +        + G+   L RRE  +L   + + G+ +++ ++   +YG +D  VE
Sbjct: 128 QFGRLHINPASMQVTLDGKDLTLGRREFTLLMEFVNHPGQILSRAKLEDVVYG-WDGDVE 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            N +E HI  LRKK+  +     + + R +GY
Sbjct: 187 SNSIEVHIHHLRKKVYPEF----IKTVRGMGY 214


>gi|114563656|ref|YP_751169.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114334949|gb|ABI72331.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 224

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L +++R A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ AI RR 
Sbjct: 60  ISLIKMLRNADVKAPILILTARLTWQDKVEGLNAGADDYLVKPFQKEELIARLDAIVRRS 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                    +G +++    +   +      +   E  ILEYLM +  + VAK ++   +Y
Sbjct: 120 SGFVRPTITSGALQIDVAAKQVTLNQTPLEITAFEYLILEYLMRHCHEVVAKQRLLDVVY 179

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
              D+  + N +E  +S+LRKKL
Sbjct: 180 A--DKEGDPNTIEVMVSRLRKKL 200


>gi|69244455|ref|ZP_00602871.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257879039|ref|ZP_05658692.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257881663|ref|ZP_05661316.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257890891|ref|ZP_05670544.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|258615327|ref|ZP_05713097.1| two component transcriptional regulator [Enterococcus faecium DO]
 gi|260558562|ref|ZP_05830758.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|293562842|ref|ZP_06677314.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293568418|ref|ZP_06679738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294623349|ref|ZP_06702209.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|68196396|gb|EAN10824.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257813267|gb|EEV42025.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257817321|gb|EEV44649.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257827251|gb|EEV53877.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|260075736|gb|EEW64042.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|291588754|gb|EFF20582.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291597243|gb|EFF28434.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291605166|gb|EFF34628.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
          Length = 222

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPIRVFSDGRDPEVQGEVFPL 149
           F  G DD + KPI   E++ RV A+ RR K++ + +   G  ++  D            L
Sbjct: 92  FKLGADDYMTKPIDVNEMILRVEALLRRSKINYSSSLIIGQTKLELDAYTVLQDQHSLIL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P++E  +L  L++   K   + Q+   I+GL D   EE  ++ HI +LR +      F  
Sbjct: 152 PQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL-DTNTEERTIDVHIKRLRTRFEKTEDFQI 210

Query: 210 VDSKRFLGY 218
           + + R LGY
Sbjct: 211 I-TVRGLGY 218


>gi|298385690|ref|ZP_06995248.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|298261831|gb|EFI04697.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 202

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  R+   H +  +I IS   SL+  +   + G DD + KP H  E+ AR+ +
Sbjct: 34  GSGLDLLE--RLKALHKRENVIIISAKDSLEDKVLGLELGADDYLPKPFHLAELNARIKS 91

Query: 115 IYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           + RR        ++  N R E    RVF + ++ E       L R+E  IL Y +   G+
Sbjct: 92  VIRRNQHDGEIYIRQGNVRIEPDKYRVFVNEQELE-------LNRKEYDILLYFINRPGR 144

Query: 167 RVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
            V K  +  +++G   D+    + + + I  LRKKL++
Sbjct: 145 LVNKNTLAESVWGDHIDQVDNFDFIYAQIKNLRKKLKD 182


>gi|265764893|ref|ZP_06093168.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|263254277|gb|EEZ25711.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL + IRA +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELCKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRILLKRKL 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             V++   E     +  +  D  V+  G    L  +E  +L Y++ N  K V++  I   
Sbjct: 122 AVVTDVEEELNYADLSVNLLDKSVKRAGRDIKLSPKEYNLLVYMIENAEKVVSRMDIADK 181

Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++   FD     N ++ +I+ LRKK+        + +K  +G+
Sbjct: 182 VWNTHFDTGT--NFIDVYINYLRKKIDRDFDTKLIHTKTGMGF 222


>gi|261213126|ref|ZP_05927410.1| DNA-binding response regulator [Vibrio sp. RC341]
 gi|260838191|gb|EEX64868.1| DNA-binding response regulator [Vibrio sp. RC341]
          Length = 218

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    +   +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 63  LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 119

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 120 SGSAEELISVGDLDLSLSKQEIYYAQQPLKLTRNEYKILASLMTQAGRVMSKELLQQALH 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +DE   +N +E HI  LRKKL + L    + + R +GY I+
Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKKLPDNL----IRNVRGVGYMIE 217


>gi|254293644|ref|YP_003059667.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254042175|gb|ACT58970.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 223

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 11/155 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
             P + ++    ++  ++   +G DD + KP    E++ARV A+ RR   +++ A T  +
Sbjct: 72  NTPALFLTALGDVENRVEGLKAGGDDYLCKPFAPSELIARVEALGRR---ASSEAPTTKL 128

Query: 132 RVFSDGRD----PEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           +V     D       +GEV   L  RE R+LE+LM N  + V +T +   ++   FD   
Sbjct: 129 QVGDLVMDLLARTVFRGEVKIDLQPREFRLLEFLMRNADQVVTRTMLLEKVWDYHFDP-- 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + NV++ HIS+LR K+        + + R  GY +
Sbjct: 187 QTNVIDVHISRLRSKIDKDFEVALLHTVRGAGYRL 221


>gi|228917720|ref|ZP_04081261.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841957|gb|EEM87063.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 222

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 59  EICRQIRLVKMTPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSN- 117

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 118 CNQQNEIAFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 178 VWG-HNVVVNPNVVDLYIGYVRKKLKCEKKNRYIQTIHGRGYSM 220


>gi|229020326|ref|ZP_04177092.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|228740962|gb|EEL91194.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 222

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR + 
Sbjct: 59  EICRQIRLVKTTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSEY 118

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  N       + +F D     V+  GE   L +RE  +L +L+ N+   +++  + + +
Sbjct: 119 IQQNETNFFQFKDLFVDASSNIVKKSGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 178

Query: 178 YG 179
           +G
Sbjct: 179 WG 180


>gi|307151759|ref|YP_003887143.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306981987|gb|ADN13868.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 226

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 6/134 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAE 127
            P++ ++   +L   +   D G DD + KP   +E+LARV A+ RR     L V+  R +
Sbjct: 73  TPVLFLTAKDTLDDRVMGLDVGADDYLVKPFQLKELLARVRALLRRSPSFDLTVTQTRFK 132

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              + + SD +    QG    L  +E  +L Y M +  + +   QI+  ++    E    
Sbjct: 133 VADLELDSDNQVAYRQGRAISLSEKEVMLLSYFMLHPSQVLTHEQIYQHLWT-EKEQPNS 191

Query: 188 NVVESHISKLRKKL 201
           NV+ + +  LR+K+
Sbjct: 192 NVLAALVRLLRRKI 205


>gi|169350204|ref|ZP_02867142.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
 gi|169292987|gb|EDS75120.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
          Length = 223

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   ++    +P+I ++     +  L  F  GVDD V KP    E++ARV A+ +R  
Sbjct: 62  FELVENLKEFKDIPVIMLTAKGESKDKLRGFSVGVDDYVVKPFDPTELMARVKAVLKRYS 121

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V ++N  +   +    +  +     E+  LP ++  ++  L  +  +  ++ Q+   I+G
Sbjct: 122 VNTSNIIKLNDVEFDGEKYEIRYHDEIIHLPLKQFELVFELAKHPDQIFSREQLIEKIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D    +  V+ HI ++R+ L +  GF  V + R LGY ++
Sbjct: 182 M-DYDGFDRTVDVHIKRIRENLGHLPGFKVV-TVRGLGYKVE 221


>gi|149190173|ref|ZP_01868448.1| transcriptional regulator [Vibrio shilonii AK1]
 gi|148835920|gb|EDL52882.1| transcriptional regulator [Vibrio shilonii AK1]
          Length = 219

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 103/224 (45%), Gaps = 16/224 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL--EFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L++D   + DG +       + L G+N L  EF   ++    E    I    +  G+ 
Sbjct: 5   LLLVEDDKNLADGLLV-----SLELAGYNCLHAEFISQVEQHWEEADLVILDRQLPDGDS 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           V  L    +    VP+I ++   +++  +   D+G +D + KP    E+ AR+ A  R  
Sbjct: 60  VEHLAGWKKI-KDVPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRAP 118

Query: 120 KVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     A    T  + +    R+   +GE+  L R E  +L +L +N G+   + ++   
Sbjct: 119 EADTEDATKVVTESLVIDKATREVNYKGELITLTRTEFDLLLFLASNLGRVFTRDELLDH 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 179 VWG-YNHFPTTRTVDTHVLQLRQKLP---GLE-IETLRGVGYKM 217


>gi|17227625|ref|NP_484173.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75907720|ref|YP_322016.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|17135107|dbj|BAB77653.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75701445|gb|ABA21121.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 247

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR       A+   
Sbjct: 74  AEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTDRIPQAAKHSE 133

Query: 129 ----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               GP+ +  +  +    G+   L   E  +L  L+   G+ V+ ++I   ++G +D  
Sbjct: 134 ILNYGPLTLVPERFEAIWFGQTVKLTHLEFELLHCLLQRHGQTVSPSEILREVWG-YDPD 192

Query: 185 VEENVVESHISKLRKKL 201
            +   +  HI  LR KL
Sbjct: 193 DDIETIRVHIRHLRTKL 209


>gi|83945607|ref|ZP_00957953.1| two-component transcriptional regulator, winged helix family
           protein [Oceanicaulis alexandrii HTCC2633]
 gi|83850973|gb|EAP88832.1| two-component transcriptional regulator, winged helix family
           protein [Oceanicaulis alexandrii HTCC2633]
          Length = 223

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 5/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETG 129
           + P + +S    +   +    +G DD + KP    E+ ARV A+ RR   +    R + G
Sbjct: 72  KTPALVLSALGEVDDRVAGLTAGGDDYLVKPYAPSELKARVDALARRRDPEALKTRLQVG 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +    R  +   E   L  RE R+LE+LM + G+ V +T +   ++   FD   + N
Sbjct: 132 DLEMDLLARTVKRGEEAIQLQPREFRLLEFLMRHAGQVVTRTMLLEKVWDYHFDP--QTN 189

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V++ HIS+LR K+        + + R  GY +
Sbjct: 190 VIDVHISRLRSKIDKPFDTSMLHTVRGAGYRL 221


>gi|327462011|gb|EGF08340.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|332362240|gb|EGJ40040.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
          Length = 234

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N    G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLRIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E +++E+LM N  K ++  +IF  ++    DE ++E  V  +IS LR+KL+
Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204


>gi|315644229|ref|ZP_07897399.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280604|gb|EFU43893.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 225

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   IR +   P+I ++    L      F  G DD + KP   +E+L R+ A+ RR ++
Sbjct: 62  QLCEEIRRYYDFPVILLTAKDQLVDKEKGFAVGTDDYLTKPFEPKELLFRIKALLRRYQM 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N ++       +  D +  EVQ  G++  LP +E  +L  L +   +  ++ ++   I+
Sbjct: 122 VNADKIHLNETTI--DRKSYEVQGHGKMLMLPMKEFELLSQLASYPDRTFSREELIQLIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D   ++  V+ HI +LR++  ++ G   + + R +GY ++
Sbjct: 180 GT-DFEGDDRTVDVHIKRLRERFADRSGDFQIRTIRGVGYKLE 221


>gi|301632442|ref|XP_002945294.1| PREDICTED: phosphate regulon transcriptional regulatory protein
           phoB-like [Xenopus (Silurana) tropicalis]
          Length = 178

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 14/172 (8%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+  L+L R  RA ++   VP++ ++        +   D+G DD + KP   +E+LAR+ 
Sbjct: 4   GQSGLQLARKWRADARTKPVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIR 63

Query: 114 AIYRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           A+ RR    +VS++ A  G + + +       QG+   +   E ++L Y M +  +  ++
Sbjct: 64  AVLRRRAPEQVSDSVA-IGELLLDAATYRVSWQGQQLKVGPTEFKLLHYFMKHAERVHSR 122

Query: 171 TQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +Q+   ++G  +F   +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 123 SQLLDKVWGDHVF---IEERTVDVHVKRLREALGAASAM--VETVRGAGYRL 169


>gi|282882917|ref|ZP_06291522.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
           315-B]
 gi|300813311|ref|ZP_07093666.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297328|gb|EFA89819.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
           315-B]
 gi|300512582|gb|EFK39727.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 223

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 13/161 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I+    +P++ +S        L  F+ G+DD V KP   +E++AR+  I  R    NN+ 
Sbjct: 67  IKKIKDIPVLMLSARGEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNR----NNKT 122

Query: 127 ETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +F        GR   V GE   L  +E  +L +L+ N    +++  + + ++G 
Sbjct: 123 TNNDNLIFQGLKIDLGGRVVFVDGEKIDLTPKEYDLLVFLVKNENIALSRETLLNKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   ++  V++HI  LR  +++   F  + + R +GY  D
Sbjct: 182 YDFFGDDRTVDTHIKMLRNSIKDYRKF--IVTVRGVGYKFD 220


>gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 230

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR  S +P+I +S        +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 67  QVCREIRKISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYEH 126

Query: 120 KVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K S+ +    P  + +      +V G+    P +E  +L +L +N  K   + Q+   ++
Sbjct: 127 KDSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G +D   +   V+ HI +LR+KL
Sbjct: 187 G-YDFYGDSRTVDVHIKRLREKL 208


>gi|227879192|ref|ZP_03997064.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256844016|ref|ZP_05549503.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849420|ref|ZP_05554852.1| two-component system response regulator [Lactobacillus crispatus
           MV-1A-US]
 gi|262046087|ref|ZP_06019050.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380700|ref|ZP_06626749.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
 gi|312976908|ref|ZP_07788657.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
 gi|227861195|gb|EEJ68842.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256613921|gb|EEU19123.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256713536|gb|EEU28525.1| two-component system response regulator [Lactobacillus crispatus
           MV-1A-US]
 gi|260573417|gb|EEX29974.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290922740|gb|EFD99693.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
 gi|310896236|gb|EFQ45301.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
           +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR   +V N 
Sbjct: 67  VRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQKQVKNE 126

Query: 125 RA---ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179
           +    E GP+ +  D  + + + G+   L   E  IL YL+A+   RV +  +IF  ++ 
Sbjct: 127 KPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 186 Q-ESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227


>gi|222147169|ref|YP_002548126.1| two component response regulator [Agrobacterium vitis S4]
 gi|221734159|gb|ACM35122.1| two component response regulator [Agrobacterium vitis S4]
          Length = 222

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 6/150 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130
           Q P++ ++   S    +D FD+G DD + KP    E+LAR+ A+ RR  K S+     G 
Sbjct: 72  QTPVLVLTARGSWMERVDGFDAGADDYLPKPFRTEELLARLRALLRRAGKTSHTLFSAGR 131

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
            +V   GR     G +  +   E R+++ L+ N+G+  +  +I + I G  D+A  +N V
Sbjct: 132 FQVDEAGRTVTFNGALLEVSPLEFRLIQILVQNKGRVFSAYEIATQIQGRDDDA-SKNAV 190

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E+ ++++RKK         ++++R  GY +
Sbjct: 191 EAMVARIRKKTDAS----AIETRRGFGYVV 216


>gi|160881458|ref|YP_001560426.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430124|gb|ABX43687.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 223

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----S 122
           IR  S+VP++ +S        +   + G DD + KP+    + A+V AI RR        
Sbjct: 67  IRRVSKVPVVFLSSAADNMNIVMAMNMGGDDFIAKPVDLNVLTAKVQAILRRTYSFQGQL 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     G I   SD        E   L + E RI++ LM N G+ + +  I   ++   D
Sbjct: 127 NAIEHNGAILNLSD-MSMICGHEKVELTKNEFRIMQILMENIGRAITREAIMERLWE-ND 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V++N +  ++++LRKKL +    + + +K+ +GY +
Sbjct: 185 SFVDDNTLTVNVNRLRKKLDDAGLENYITTKKGVGYMV 222


>gi|83952004|ref|ZP_00960736.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius nubinhibens ISM]
 gi|83837010|gb|EAP76307.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius nubinhibens ISM]
          Length = 221

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +++ S    VP+I +S        +   ++G DD V KP    E++ARV A  R
Sbjct: 57  IEVCRQLKSRSDTRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVAELMARVRAQLR 116

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R + +    R E   I + ++        +   L   E R+L   M   G+  ++ Q+  
Sbjct: 117 RTRPAAMGARLEFDDIVLDAETHRVTRADQSLKLGPTEFRLLSTFMEKPGRVWSREQLLD 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 177 RVWG-RDIYVDTRTVDVHIGRLRKALCQYGGDDPLRTVRGAGYAL 220


>gi|118581362|ref|YP_902612.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504072|gb|ABL00555.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 223

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 24/218 (11%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L +D Y      DG   EG          Q+ + E   AI   ++ K + +  +  + 
Sbjct: 18  RGLEEDDYSVTIVHDGA--EGLK--------QAQSGEYSLAILDVMVPKKDGLTVIRELR 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
              SQ+P++ ++   +    +   ++G DD + KP    E+LARV A+ RR     +  +
Sbjct: 68  EGGSQMPVLMLTARGTTDDIVSGLEAGADDYLTKPFAFAELLARVRALLRR-----SEHD 122

Query: 128 TGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
            G    F+D R DP        G    L  +E  +LEYL+ N  K +++  I   ++   
Sbjct: 123 RGAEIFFADLRLDPVSHKVWRSGNEIDLTAKEYGLLEYLVRNPNKVLSRAMIAEHVWDYA 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           FD     N+++ +++ LRKK+  +     + + R  GY
Sbjct: 183 FDSFT--NIIDVYVNYLRKKVDKEYSTKLIHTVRGQGY 218


>gi|325262963|ref|ZP_08129699.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032057|gb|EGB93336.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 215

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 5/138 (3%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +++   Q+P+I ++    +   +   + G DD + KP    E++AR+ A  RR       
Sbjct: 63  LLKQWKQIPVICVTARGEIGDRVRGLNGGADDYIVKPFAVEELVARIQAAMRRQNKEQTL 122

Query: 126 AETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            + G + V  D     V+ E  P  L  RE  +L+ L+ N+   +++ ++    +G+ D 
Sbjct: 123 YQLGSVEV--DTSQAVVRKEGIPVELTTREYELLKVLLENKNIALSRDRLLDLAWGM-DY 179

Query: 184 AVEENVVESHISKLRKKL 201
             ++  V+ HI +LR+KL
Sbjct: 180 CGDDRTVDVHIRRLRQKL 197


>gi|319648430|ref|ZP_08002646.1| YxdJ protein [Bacillus sp. BT1B_CT2]
 gi|317389509|gb|EFV70320.1| YxdJ protein [Bacillus sp. BT1B_CT2]
          Length = 235

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR  S  P++ IS        +   ++G DD + KP H   ++A++ +  RR      
Sbjct: 65  RQIRQESICPVLFISARTGEMDQVMALENGGDDFITKPFHAEIVMAKIRSQLRRAYGEYA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K      E   +R++ +  +    G+   L ++E  I+E LM    +   +  + + ++
Sbjct: 125 AKAEERLLEKEGLRLYPERLELTFAGQTAALTKKEADIIESLMERHPRISGREDLLAKLW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
              D+A V+EN +  +I+++RKK + +LG  D V++ R  GY ++
Sbjct: 185 D--DQAYVDENTLNVNITRVRKKFQ-ELGIEDAVETVRGAGYRLN 226


>gi|315181978|gb|ADT88891.1| hypothetical transcriptional regulator [Vibrio furnissii NCTC
           11218]
          Length = 224

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 103/230 (44%), Gaps = 21/230 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD AL +     + G + V  E    +      Q+ A  D   +    I K    
Sbjct: 7   ILIINDDEALTEA---IVMGLEMVGCECLTHVNCRP--QTDAWVDADLV----IWKMNST 57

Query: 61  LELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +LP I R  A  ++PL+ +    S    +   D+G  D V+ P    E+LAR+ A  R+
Sbjct: 58  KDLPLIARMMACKRLPLVVLGINFSTGEKVRTLDAGAIDFVDIPCSGLELLARIRAHIRK 117

Query: 119 L-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K++       PI +     +    G+ + L  +E  +L +L+ N G+  +K +I
Sbjct: 118 FYPLKSKMTTLICPGIPITLNRVSWETIYHGKEYRLSTKEFDLLYFLLENSGRVCSKDEI 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              ++G + E+++   +++HI +LR++  +      + + R +GY +  N
Sbjct: 178 LRNVWG-YSESMKTRTLDTHIFRLRERFPDV----SIKTVRGIGYCLKAN 222


>gi|304385704|ref|ZP_07368048.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328208|gb|EFL95430.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 229

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +R  S++P++ +S        +    +G DD V KP +  EI+ARV ++ RR +
Sbjct: 61  MQVVREVRKDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRSE 120

Query: 121 --VSNNRAE---TGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
             V+++  E    GP+ + SD  +   + G+   L   E  IL YL+A+   RV +  +I
Sbjct: 121 KDVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGIL-YLLASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           F  ++   +  +    V  H+S LR K+    G + V ++   +GY +
Sbjct: 180 FERVWQQ-ESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYKV 226


>gi|300856126|ref|YP_003781110.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300436241|gb|ADK16008.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 230

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 9/148 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+   IR  S  P+I I+        +   +SG DD + KP    E++AR+ A+ RR+ 
Sbjct: 62  IEVCNKIREKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAVLRRIT 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K+S  + E+  + +  D    +++G+   L ++E  +L  L ++  K V++  + 
Sbjct: 122 FPESNKMSLIKYESLELDI--DNYSVKLKGKNINLTKKEIEVLWMLSSSPNKIVSRDDLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR 202
             I+G+ D   +   V++HI ++R KL 
Sbjct: 180 DNIWGV-DYFGDPRTVDTHIKRIRSKLH 206


>gi|318078413|ref|ZP_07985745.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 245

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 13/169 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R ++AH  VP++ ++        L     G DD + KP   RE+ ARV  + RR++
Sbjct: 78  LEVCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVE 137

Query: 121 VSNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +   A T        G + V    R   V+GE   L   E  +L  L       +++ Q
Sbjct: 138 RAALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQ 197

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + ++   D A     V+SHI    K LR K+G + + +   +GY+++
Sbjct: 198 LLAEVWDWAD-ASGTRTVDSHI----KALRRKIGAERIRTVHGVGYALE 241


>gi|284048184|ref|YP_003398523.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283952405|gb|ADB47208.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 232

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 20/153 (13%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R  S +P+I ++   S    +   + G DD ++KP + RE++ARV A+ RR  
Sbjct: 64  LEVCKQVRKISDIPIIMLTAKDSDDDRILGLEIGADDYISKPFNTREVVARVKAVLRRTN 123

Query: 121 VS------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            S            N        RV + GR+            +E  +L  L +N G   
Sbjct: 124 ASMSSQNKQVLEYPNLMINLSEYRVVAFGRE-------ITFTAKEMELLWCLASNPGIVF 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ Q+   I+G +    +   V++HI ++R KL
Sbjct: 177 SRNQLLEKIWG-YTYYGDTRTVDTHIKRVRHKL 208


>gi|260584708|ref|ZP_05852454.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
 gi|260157731|gb|EEW92801.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
          Length = 227

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 15/154 (9%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P++ I+    L++    F  GVDD + KP+   E++ RV A+ RR     ++ E   + 
Sbjct: 74  LPILMITAKSQLESLEAAFKLGVDDYMVKPLRLEELVLRVKALLRR-----SQLEAEKVL 128

Query: 133 VFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
            F+  R             GE   +P +E  +L  L++   K   +  +   I+G+ +E 
Sbjct: 129 TFTHTRLDYNTLTMTELTTGEQVQIPPKEFFLLYKLLSYPEKIFTRLDLLDDIWGM-EED 187

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +E ++++ I +LR+KL+    FD V + R LGY
Sbjct: 188 YDERLIDACIKRLRQKLKGNEDFDIV-TVRGLGY 220


>gi|229009770|ref|ZP_04166991.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
 gi|228751506|gb|EEM01311.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
          Length = 266

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 92  IEVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 151

Query: 121 V--SNNRAETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN   +      F     D +   V   G+   L  +E  +L++  +N  +   KTQ
Sbjct: 152 VLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQ 211

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           +F  ++   D  +E +N V  HI KLRKK+
Sbjct: 212 LFRNVWD--DNYIEDDNTVMVHIRKLRKKI 239


>gi|115523445|ref|YP_780356.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517392|gb|ABJ05376.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 240

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 21/174 (12%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   +L R IR  S VP++ ++     ++ ++    G DD V KP   RE+L R+  I 
Sbjct: 74  GETGFDLARSIRLDSAVPIVMLTARHEPESRIEGLQIGADDYVAKPFEPRELLLRIGNIL 133

Query: 117 RR-LKVSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171
           +R + V+  + E    GP  V+   R    QG E+  L  RER +L  L A  G+ V + 
Sbjct: 134 KRSMPVATPQLEQVSFGPY-VYHLERGELRQGEEIVHLTDRERDMLRILAAAPGETVPR- 191

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSI 220
               A+ G   + V E  V+  I++LR+K+      DP +     + R +GY +
Sbjct: 192 ---GALTG--GDTVNERAVDVQINRLRRKIEQ----DPANPLFLQAVRGIGYRL 236


>gi|323144112|ref|ZP_08078752.1| transcriptional regulatory protein QseB [Succinatimonas hippei YIT
           12066]
 gi|322416127|gb|EFY06821.1| transcriptional regulatory protein QseB [Succinatimonas hippei YIT
           12066]
          Length = 227

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 15/156 (9%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---------VSNN 124
           P+I ++   ++   +   D G DD + KP    E+LAR+ A+ RR           ++N 
Sbjct: 74  PVIVLTARDAIADRVSGLDKGADDYLVKPFDFTELLARIRAVLRRSTGNSEKIDNILTNG 133

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                P+      ++     EV  L  RE  +LE LM   G  +++  +   IY  +DE 
Sbjct: 134 ALTLDPVEHLLTVKEENESREV-SLTSREFSLLEALMQRPGAVLSREALEQRIYS-YDEE 191

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           VE N VE  I  LRK    K+G   + + R +G+ +
Sbjct: 192 VESNAVEFIIHSLRK----KIGASHIKNVRGVGWKV 223


>gi|315645110|ref|ZP_07898236.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315279531|gb|EFU42836.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 11/133 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS---DGRDPEV--QGEVFP 148
           G DD + KP    E+LAR+ A  R    +   +  G IR+ S   D R  E+  QGE   
Sbjct: 100 GADDYMVKPFSFEELLARIQARLR----NQFPSLLGEIRLGSFTIDDRKKEIAYQGEALE 155

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L   E ++L+ L+   G  ++K+ I + ++  +D   E+N+VE +I  LR+KL +K    
Sbjct: 156 LSPTEYKLLKLLVTKHGSVLSKSNILNIVWD-YDFGGEDNIVEVYIRSLREKLGDK-EHR 213

Query: 209 PVDSKRFLGYSID 221
            + + R  GY +D
Sbjct: 214 VIRTLRGAGYRVD 226


>gi|332653533|ref|ZP_08419278.1| phosphate regulon response regulator PhoB [Ruminococcaceae
           bacterium D16]
 gi|332518679|gb|EGJ48282.1| phosphate regulon response regulator PhoB [Ruminococcaceae
           bacterium D16]
          Length = 224

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 21/231 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M  +++D A ++   +      G+  +GF+   +F E ++  + E V          G +
Sbjct: 1   MIYILEDDASIRKLVVYTLQSQGMEAQGFDRPSQFWEAMEKGSPELVLLDIMLPEEDGLQ 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           VL+  R + A   +P+I ++   +    +   D G DD V KP    E++ARV    R  
Sbjct: 61  VLKRLRSMPATKTLPVIMLTAKSTEYDKVLGLDEGADDYVAKPFGMMELMARVRTALRHA 120

Query: 120 KVSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +  + +T  +          +  DG D EV      L  +E ++L  L+   G    +
Sbjct: 121 GQNQPKEKTYSLGSLFVDPERHIVRDG-DREVT-----LTLKEFQVLCLLLERAGTVFTR 174

Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+ + I+G  FD A     V+ HI  LR+KL  K G D +++ R +GY I
Sbjct: 175 DQLLNTIWGYEFDGA--SRTVDVHIRTLRQKL-GKSG-DCIETVRGIGYKI 221


>gi|217965616|ref|YP_002351294.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289433637|ref|YP_003463509.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290892561|ref|ZP_06555554.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|315280741|ref|ZP_07869554.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|217334886|gb|ACK40680.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289169881|emb|CBH26421.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290557870|gb|EFD91391.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|307569835|emb|CAR83014.1| DNA-binding response regulator [Listeria monocytogenes L99]
 gi|313611043|gb|EFR85929.1| transcriptional regulatory protein WalR [Listeria monocytogenes FSL
           F2-208]
 gi|313615609|gb|EFR88941.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|313634987|gb|EFS01371.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           N1-067]
 gi|313639665|gb|EFS04456.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           S4-171]
          Length = 237

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 16/189 (8%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
            + +G  +LE  E +Q     D+  ++  L G+    +E+ R +R    +P+I ++   S
Sbjct: 32  CAYDGDEALELVEEVQP----DLILLDIMLPGRDG--IEVCREVRKKYDMPIIMVTAKDS 85

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVSNNRAETGPIRVF 134
               +   + G DD V KP  +RE++ARV A  RR          +  N+  E G + + 
Sbjct: 86  EIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQVSSSAAEEEENSELEIGSLIIH 145

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            D      +GE   L  RE  +L YL  + G+ + +  +   ++G +D   +   V+  +
Sbjct: 146 PDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREHLLQTVWG-YDYFGDVRTVDVTV 204

Query: 195 SKLRKKLRN 203
            +LR+K+ +
Sbjct: 205 RRLREKIED 213


>gi|153814679|ref|ZP_01967347.1| hypothetical protein RUMTOR_00894 [Ruminococcus torques ATCC 27756]
 gi|145848173|gb|EDK25091.1| hypothetical protein RUMTOR_00894 [Ruminococcus torques ATCC 27756]
          Length = 168

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE+VL  P I      +P+I +S    +   +     G  D + KP + RE+LAR+ A++
Sbjct: 7   GEEVL--PHI----KGIPVIIMSAKVDVDNKVALLLGGAVDYMTKPFYTRELLARI-AVH 59

Query: 117 RRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            R   S  ++E      I++  D    +++     L R E  IL+ LM N+ + V+K+ +
Sbjct: 60  LRTFDSFAKSEILTFEEIKLNIDTHIAQIKDVEIKLTRTEYAILKLLMQNQTQVVSKSHL 119

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I     +  E + +++HIS LRKKLR   G + +++   +G+ +
Sbjct: 120 LDHISEDTPDCTESS-LKTHISNLRKKLRAVNGKEYIEAVWGIGFKM 165


>gi|94314250|ref|YP_587459.1| transcriptional regulator two components regulatory system
           [Cupriavidus metallidurans CH34]
 gi|93358102|gb|ABF12190.1| transcriptional regulator two components regulatory system
           [Cupriavidus metallidurans CH34]
          Length = 225

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 15/188 (7%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHS-QVPLIGI 78
           G+  EG++ +E    +  +A  +  A    ++     G+  +E  R +R    + P++ +
Sbjct: 19  GLQEEGYD-VETAHSVDVAAAHNCYAFSLLILDWMLPGKSGVEFCRELREQGVRTPILML 77

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138
           +   ++   +   D+G DD + KP    E+LA V A+ RR+++    A+  PI +     
Sbjct: 78  TARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVEL----AQPAPITLNDLVI 133

Query: 139 DPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
           DP+ +G         L  +E  IL  L+ + G+ V++ Q+   I+   D    +N+++ H
Sbjct: 134 DPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIWH-ADLIAIDNLIDVH 192

Query: 194 ISKLRKKL 201
           +  LR+KL
Sbjct: 193 MKNLRRKL 200


>gi|126437092|ref|YP_001072783.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126236892|gb|ABO00293.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 251

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 23/181 (12%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   LE+ R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ 
Sbjct: 73  GMDGLEVCRRLRTFSDAYVVMLTARDTEMDTIVGLTVGADDYVTKPFSPRELVARIRAML 132

Query: 117 RRLKVSNNRAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           RR + +  R              GP+R+    R+  + GE   L R E  +L  L A  G
Sbjct: 133 RRPRATPERESDGGGDVAAPLSFGPLRIDVAAREVSLDGEPILLTRTEFDLLAALSARPG 192

Query: 166 KRVAKTQIFSAIY-GLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219
             +++ Q+   +  G +     E++V+ HI  +R+    KLG DP     V + R +GY 
Sbjct: 193 VVLSRRQLLETVREGPW--VGNEHLVDVHIGHVRR----KLGDDPAAPRYVITVRGVGYR 246

Query: 220 I 220
           +
Sbjct: 247 M 247


>gi|46907735|ref|YP_014124.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093429|ref|ZP_00231194.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226224108|ref|YP_002758215.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254852131|ref|ZP_05241479.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254931442|ref|ZP_05264801.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300764827|ref|ZP_07074817.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|46881004|gb|AAT04301.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018208|gb|EAL08976.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225876570|emb|CAS05279.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605434|gb|EEW18042.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293582993|gb|EFF95025.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300514503|gb|EFK41560.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|328465545|gb|EGF36774.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328474868|gb|EGF45668.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332311949|gb|EGJ25044.1| Transcriptional regulatory protein yclJ [Listeria monocytogenes
           str. Scott A]
          Length = 228

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           + + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR  
Sbjct: 60  MTICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 119 --LKVSNNR--AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQI 173
                 NN    ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+
Sbjct: 120 SATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G +    +E  V+ HI +LR+K+
Sbjct: 180 LEQVWG-YQFYGDERTVDVHIKRLRQKI 206


>gi|328946836|gb|EGG40973.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
          Length = 234

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N    G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLRIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E +++E+LM N  K ++  +IF  ++    DE ++E  V  +IS LR+KL+
Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204


>gi|324998685|ref|ZP_08119797.1| putative OmpR family two-component response regulator
           [Pseudonocardia sp. P1]
          Length = 226

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 17/188 (9%)

Query: 41  SAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           S R DV  ++  L G  G ++L+  R     + V ++   D    +   D FD G DD +
Sbjct: 42  SGRHDVIVLDIMLPGLSGYRILQHLRDRGVWTPVLMLTAKDGEYDEA--DAFDLGADDYL 99

Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAETGP--IRVFSDGRDPEVQ----GEV-FPLPRR 152
            KP       + V  + R   +     E+ P  +RV     DP       G+V   L  R
Sbjct: 100 TKP------FSFVVLLARLRALLRRAGESAPTVLRVGDLSLDPATHRVHRGDVEISLTPR 153

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  +LE+LMA+ G+ V KT I  +++    +  E NVVE ++  LR+K+    G   +++
Sbjct: 154 EFGVLEHLMAHPGQVVTKTDILRSVWDAHYDG-EVNVVEVYVGYLRRKIDAPFGTHSIET 212

Query: 213 KRFLGYSI 220
            R +GY +
Sbjct: 213 LRGVGYRM 220


>gi|310829315|ref|YP_003961672.1| hypothetical protein ELI_3753 [Eubacterium limosum KIST612]
 gi|308741049|gb|ADO38709.1| hypothetical protein ELI_3753 [Eubacterium limosum KIST612]
          Length = 226

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 88/189 (46%), Gaps = 14/189 (7%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------GKGEKVLELPRIIRAHSQVPLIG 77
           + LEGF +   + + ++  + +  + E  ++      G G     L + IR   + PLI 
Sbjct: 21  LELEGFKTTLVQSFEEAGKKIEEKSWEMVILDVNLPDGDG---FSLAKKIRLKDRTPLIF 77

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIRVF 134
           ++        L  F+ G DD + KP + + ++ R+ A++RR +VS  R E    G + + 
Sbjct: 78  LTACDLDDDILKGFELGADDYITKPFNIKIVIKRINAVFRRTEVS--RKELFICGNLEID 135

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
            + R      +   L   E ++L+    N GK + +  +  +++      V+E+ +  ++
Sbjct: 136 FEKRTATKNEKPLVLTPTEFKLLQLFCKNPGKVLTRKMLLESLWDNEGNFVDEHTLTINV 195

Query: 195 SKLRKKLRN 203
           S+LR K+ +
Sbjct: 196 SRLRSKISD 204


>gi|229161727|ref|ZP_04289706.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
 gi|228621694|gb|EEK78541.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
          Length = 215

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 102/214 (47%), Gaps = 28/214 (13%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAH 70
           K+G+  L   DG           EE LQ    E V  AI  +++ K +  + + + I+ +
Sbjct: 22  KEGFEVLLAKDG-----------EEALQIFYDEKVDLAILDWMMPK-QSGIAVCQEIKKN 69

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127
           S V ++ ++     +  L    SG D+ V KP H   ++ R   + +    ++V + +  
Sbjct: 70  SSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRAKKLVQHDDVIQVQDVKIN 129

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
               +VF +  + E+        + E ++++  + ++G  + + ++   ++G FD   EE
Sbjct: 130 FAKNKVFKNDIELEI-------TKTELQLIKCFLQHKGMILTRKKLLDIVWG-FDYFGEE 181

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V++H+ +LRK    K+G + + + R LGYS++
Sbjct: 182 RTVDTHVRRLRK----KIGENVIKTHRGLGYSLE 211


>gi|257413909|ref|ZP_04744629.2| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257201844|gb|EEV00129.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 234

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR   ++P+I +S        +  F+ G+DD V KP   RE++ RV  +  R   +N 
Sbjct: 75  REIRKFKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISR---NNK 131

Query: 125 RAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   G   +F          GR   V G+   +  +E  +L YL+ NR   + + ++ + 
Sbjct: 132 KDVRGGHEIFQAEGLVVDFTGRTVTVDGKRVEMSPKEYELLFYLVRNRNIALDREKLITE 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G +D   ++  +++HI  LR  L
Sbjct: 192 VWG-YDYYGDDRTLDTHIKLLRSSL 215


>gi|297585393|ref|YP_003701173.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297143850|gb|ADI00608.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 229

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR+   +P+I +S   S    +  F+ G DD + KP    E+ AR+ A   R+ 
Sbjct: 61  LEVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANI-RMY 119

Query: 121 VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N  +E   +R      DP     EV+GE   L  +E ++L +   +  +     Q++ 
Sbjct: 120 AMNPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYD 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            I+ L D       V+ HIS LR+K+
Sbjct: 180 RIWNL-DATGYVETVKVHISHLRRKI 204


>gi|56540679|gb|AAV92793.1| PmrA [Salmonella enterica]
          Length = 222

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHNN 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L V N     G  + + DG++         L  +E  +L  LM   G  V +  +
Sbjct: 122 QGESELTVGNLTLNMGRHQAWKDGQE-------LTLTPKEYALLSRLMLKAGSPVHREIL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ IY  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 175 YNDIYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|6862579|gb|AAD30119.2| DNA binding response regulator RpaB [Tolypothrix sp. PCC 7601]
          Length = 233

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  ++   
Sbjct: 62  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTSASG 121

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      I++ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 122 IPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 181

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 182 YTPERHVDTRVVDVHISRLRAKLED 206


>gi|75906838|ref|YP_321134.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700563|gb|ABA20239.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 228

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 24/218 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L  +GY      DG++  G         L   +  D++ ++  L   G   LE+ R +RA
Sbjct: 22  LSSEGYKVSVAHDGIT--GLT-------LARESTPDLAVLDWML--PGLSGLEICRRLRA 70

Query: 70  H-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             + +P+I ++    +   +   D+G DD V KP    E+LAR+ A  RR + ++     
Sbjct: 71  TGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQETDE---- 126

Query: 129 GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             +  F D        EVF       L  +E  +LEYL+++  +   + QI   ++G +D
Sbjct: 127 -DLLQFEDLSLNRRTREVFRGNRAIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWG-YD 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N++E +I  LR KL        + + R +GY++
Sbjct: 185 FMGDSNIIEVYIRYLRLKLEEHNEKRLIHTVRGVGYAL 222


>gi|52143445|ref|YP_083384.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|51976914|gb|AAU18464.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
          Length = 229

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 12/183 (6%)

Query: 28  GFNSLEF---EEWLQSSARE--DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDY 81
           GF  LE    EE LQ       DV+ ++  L G  G +V +  R  + + ++ +I ++  
Sbjct: 25  GFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQVCKTIR--KENKKIGIIMLTAR 82

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGR 138
              +  +     G DD + KP    E+ AR+ ++ RR++V + +A T   GP  +     
Sbjct: 83  VQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVHDEKANTIISGPFSLNIIEE 142

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
                G++  L   E  IL+YLM    K V++ +I + I+G  +   E  VV+ ++ +LR
Sbjct: 143 RLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWGT-NYVGETKVVDVNMRRLR 201

Query: 199 KKL 201
           +K+
Sbjct: 202 QKI 204


>gi|25300968|pir||AC0630 response regulator copR [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502270|emb|CAD08222.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137883|gb|AAO69444.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 248

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 40  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 88

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 89  RTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 148

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 149 INGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 206

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + + +GY +
Sbjct: 207 TNTVDVAIRRLRAKVDDPFEKKLIMTVQGMGYRL 240


>gi|154246784|ref|YP_001417742.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160869|gb|ABS68085.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 232

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 25/211 (11%)

Query: 16  IALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LEL 63
           IAL  DD   L   + +LE E +   +  +  SA++ F     +             +EL
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYRIDTYTDGASALDGFKTNPPDLAILDIKMPRMDGMEL 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R  + +P+I ++        L     G DD + KP   R ++ RV A+ RR+   +
Sbjct: 64  LRRLRQKTDMPVIFLTSKDEEIDELFGLKMGADDFIKKPFSQRLLVERVKAVLRRVGAKD 123

Query: 124 NRA--ETGPIRVFSDGR---DPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             A  ET   +V   G    DPE      +GE   L   E  IL+ L    G   ++  +
Sbjct: 124 GAAPRETDSAKVLERGNLRMDPERHTCTWKGEPVTLTVTEFLILQALAQRPGVVKSRNAL 183

Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKLRN 203
             A Y   D+  V++  ++SHI +LRKK ++
Sbjct: 184 MDAAYD--DQVYVDDRTIDSHIKRLRKKFKS 212


>gi|94308973|ref|YP_582183.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93352825|gb|ABF06914.1| response regulator, OmpR-family [Cupriavidus metallidurans CH34]
          Length = 268

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)

Query: 57  GEKVLELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G +VL+    +RAH   ++P++ ++   +    +    +G DD + KPI  RE+ AR+AA
Sbjct: 64  GREVLDW---VRAHLDPRIPVMFLTGRDTEADIVATLSAGADDYMVKPIRPRELGARIAA 120

Query: 115 IYRRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           + RR      +  + R   G  R  +  R+    G+   L  +E  +   L  N G+ V 
Sbjct: 121 LLRRAYPDSRQPDDGRLTWGCFRFDAVTREATCHGQEVRLTPKEFEVALLLFRNEGRAVP 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +  + +AI+G     +    +++H+S++R KL
Sbjct: 181 REYMLAAIWGKELPPLSRT-IDTHVSRVRTKL 211


>gi|330831577|ref|YP_004394529.1| transcriptional regulatory protein CpxR [Aeromonas veronii B565]
 gi|328806713|gb|AEB51912.1| Transcriptional regulatory protein CpxR [Aeromonas veronii B565]
          Length = 226

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 21/201 (10%)

Query: 24  VSLEGFN---SLEFEEWLQSSAREDVSAIEA-FLIGKGEKVLELPRIIRAHSQVPLIGIS 79
           ++LEGF    + + EE LQ  A +    +    ++ K      L ++ + H   P++ ++
Sbjct: 16  LTLEGFQVTVAEDGEEGLQRLAEQSFDLVLLDVMMPKLNGFAMLTKLRKTHD-TPVLMLT 74

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NNRAETGPIR-V 133
                Q  ++  ++G DD + KP   RE+LARV AI RR + +     N+  E   +  V
Sbjct: 75  ARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQSAPPQRGNSSDEVHFMDIV 134

Query: 134 FSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL----FDEAVEEN 188
              G      GE +  L   E  +LE L+ N G+ V+K+ +   + G     FD A    
Sbjct: 135 LQPGLQQARCGEQLLELTATEFGLLECLLRNPGQIVSKSHLSEQVLGKKLEPFDRA---- 190

Query: 189 VVESHISKLRKKLRNKLGFDP 209
            ++ H+S LRKKL ++    P
Sbjct: 191 -IDMHLSNLRKKLPDRTDGQP 210


>gi|328949663|ref|YP_004366998.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328449987|gb|AEB10888.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 2/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R  +   ++P+I ++   +++  ++    G DD V KP H  E++AR+  +  R K 
Sbjct: 64  EIARRAKQAGEIPIIVLTAADAVERKVELLSGGADDYVTKPFHPAELIARI-QVQLRHKE 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   + V    R    +     L  +E  +L  L +  GK  ++ +I   ++G  
Sbjct: 123 GGEVRQVDALLVHLGKRQVHFEEREVRLSPKEFDLLALLASRPGKVFSREEIERHLWGKP 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E    NVV+ H++ LR KLR    +  + + R +GY++
Sbjct: 183 LEH-SSNVVDVHVANLRAKLREAGAYGYLRTVRGVGYAL 220


>gi|315178867|gb|ADT85781.1| transcriptional regulator CpxR [Vibrio furnissii NCTC 11218]
          Length = 228

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 21/138 (15%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP--------IRVFSDGRDPEVQGE 145
           G DD + KP   RE+LAR+ AI RR   + N  ++ P        ++++   ++   QG+
Sbjct: 93  GADDYLPKPFSDRELLARIRAILRR---TGNHTQSKPTDMIECQDLQLYPGKQEAYCQGQ 149

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
           +  L   E  +L + + N G+ + K  +   + G     FD A     ++ H+S LRKKL
Sbjct: 150 LLDLTTTEFALLTHFVQNPGETLTKEMLSLDVLGKRLAAFDRA-----IDMHVSNLRKKL 204

Query: 202 RNKLGFDP-VDSKRFLGY 218
             +    P + + R  GY
Sbjct: 205 PERSDGKPRIKTLRGRGY 222


>gi|295319459|gb|ADF99836.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 133

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 8/130 (6%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           G DD + KP +   +LAR+  I +R    LK +NN        +         + +   L
Sbjct: 4   GADDFITKPYNTEILLARITNILKRAYGNLK-TNNTLNYKDFNLNLSNATVIYKDKSLEL 62

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-D 208
            + E +IL YL+ NRG  V +  +   ++   D  V+++ +  +I++LRKKL+ ++G  +
Sbjct: 63  TKNEVKILSYLINNRGNIVKRDSLMEYLWK-SDYFVDDSTLTVNINRLRKKLQ-EIGIEN 120

Query: 209 PVDSKRFLGY 218
           P++++R LGY
Sbjct: 121 PIETRRGLGY 130


>gi|237794074|ref|YP_002861626.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229263707|gb|ACQ54740.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121
           IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K      
Sbjct: 70  IRKSKPMPVIIISAKEEKDIKIEALRMGADDYITKPFDIDEVSARIDSHLRRYKEFSNIT 129

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  +   I +  D R+  +  +   L  RE  IL+ LM    K   K+ +F +++   
Sbjct: 130 PQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFESVWS-S 188

Query: 182 DEAVEENVVESHISKLRKKL 201
           +    +N +  HIS LR KL
Sbjct: 189 EYLCNDNTINVHISNLRNKL 208


>gi|227524819|ref|ZP_03954868.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088034|gb|EEI23346.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 242

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 22/163 (13%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVA 113
           GE+VL+  R+ R  + V ++   D     T  D     + G DD V KP   RE++AR+ 
Sbjct: 60  GEEVLKRIRMDRNDTPVIVLTAKD-----TEFDKVFGLEMGADDYVPKPFSPREVIARIN 114

Query: 114 AIYRRLKVS-----NNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
           A+ RR + S      N A         TGP  +        V  +   L  +E  +++YL
Sbjct: 115 AVLRRYEKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYL 174

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + +  + +++ Q+   ++G FD + +  +V+  I+ LR+K+ +
Sbjct: 175 VGHENQVLSRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIES 216


>gi|254824434|ref|ZP_05229435.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|255520946|ref|ZP_05388183.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
 gi|293593670|gb|EFG01431.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
          Length = 228

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           + + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR  
Sbjct: 60  MTICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 119 --LKVSNNR--AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQI 173
                 NN    ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+
Sbjct: 120 SATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G +    +E  V+ HI +LR+K+
Sbjct: 180 LEQVWG-YQFYGDERTVDVHIKRLRQKI 206


>gi|199597241|ref|ZP_03210672.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199591757|gb|EDY99832.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 234

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 10/137 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGE 145
           G DD V KP   REI+AR+ AI RR        L  + N+   G I +  +       G 
Sbjct: 95  GADDYVTKPFSPREIIARIKAIERRSQSQPQAPLPGNANQITVGQITIDPENYKASKAGH 154

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205
              L  +E  +L Y     GK +++  + + ++G FD   E  +V+  +S LR K+    
Sbjct: 155 RLQLTPKEFELLVYFAQRVGKTLSRDALLNGVWG-FDYPAETRMVDIQVSHLRDKIETDP 213

Query: 206 GF-DPVDSKRFLGYSID 221
              D + + R  GY ++
Sbjct: 214 KHPDYLKTVRGFGYQME 230


>gi|167759062|ref|ZP_02431189.1| hypothetical protein CLOSCI_01409 [Clostridium scindens ATCC 35704]
 gi|167663469|gb|EDS07599.1| hypothetical protein CLOSCI_01409 [Clostridium scindens ATCC 35704]
          Length = 222

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 17/164 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +RA S+VP+I ++        L     G DD + KP     +LAR+AA+ +R   +    
Sbjct: 66  VRAVSEVPIIFLTSRTDSMDELTGMLKGGDDYITKPFQPPILLARIAAVLKR---TRKET 122

Query: 127 ETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           E    R+   G + +V       QG    L + E +IL  L   +G+ V + +I   I  
Sbjct: 123 EGEAARLSHKGVELDVARGYISFQGRQTELSKNELKILHCLFKKKGEIVPRVEI---IEY 179

Query: 180 LFDEAV--EENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           L+D  V  ++N +  +++++R KL  ++G +  ++++R +GY I
Sbjct: 180 LWDNQVFIDDNTLSVNMTRIRSKL-EEIGVEGFIETRRGMGYRI 222


>gi|81300213|ref|YP_400421.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81169094|gb|ABB57434.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 229

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 16/151 (10%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R +R    QVP++ ++   ++   +   D+G DD + KP   +E+LARV A+ RR 
Sbjct: 60  LDLCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRR- 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEV---------QGEVFPLPRRERRILEYLMANRGKRVAK 170
              + R ET      + G D E+         QG    L  +E ++L  LM + G+ V+ 
Sbjct: 119 ---SPRQETSEAPRLAGG-DLELDTPNQLAYRQGRRIELSEKETQLLAVLMQHPGQLVSH 174

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++ + ++G  +     NV+ + I  LR+KL
Sbjct: 175 QELQAQVWGSANPP-SSNVLAAQIRLLRRKL 204


>gi|329571904|gb|EGG53582.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1467]
          Length = 209

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 11/118 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143
           G DD + KP   RE+LAR+ AI+RRLK +                G IRV     +  V+
Sbjct: 68  GADDYLTKPFSPREVLARMKAIFRRLKPTTTEPLQEDTPKAPLVIGEIRVDEQNYEVFVR 127

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +   L  +E  +L Y M  + + + +  +   I+  +D A +  +V+ HIS LR K+
Sbjct: 128 NQPIELTPKEFELLVYFMKRKDRVINRETLLERIWQ-YDFAGQSRIVDVHISHLRDKI 184


>gi|320354633|ref|YP_004195972.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320123135|gb|ADW18681.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 237

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 6/135 (4%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---- 127
           ++P+I +++       +   D G DD + KP   RE+LARV A+ RR K S         
Sbjct: 78  ELPVILLTERNGEDDKVTGLDHGADDYLTKPFSPRELLARVRALLRRSKRSGASGGQHLI 137

Query: 128 TGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            G +R+    R+  +    + PL + E  +L +L +  G  V   ++   + G +D  VE
Sbjct: 138 VGQVRIDPAAREVRLPDASLLPLTKTEFDLLYHLASRPGAVVTHGELLQEVLG-YDPHVE 196

Query: 187 ENVVESHISKLRKKL 201
              +  HI+ +R+K+
Sbjct: 197 TKSLVMHIANIRRKI 211


>gi|315441548|ref|YP_004074425.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
 gi|315265203|gb|ADU01944.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
          Length = 251

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 23/181 (12%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   LE+ R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ 
Sbjct: 73  GMDGLEVCRQLRTFSDAYVVMLTARDTEMDTIVGLTVGADDYVAKPFSPRELVARIRAML 132

Query: 117 RRLKVS----NNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           RR + +    ++R          GP+R+   GR+  + GE   L R E  IL  L A  G
Sbjct: 133 RRPRATPEPESDRGGDLPAPLSFGPLRIDVAGREVSLDGEPILLTRTEFDILAALSARPG 192

Query: 166 KRVAKTQIFSAIY-GLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219
             +++ Q+   +  G +     E++V+ HI  +R+    KLG DP     V + R +GY 
Sbjct: 193 VVLSRRQLLETVREGPW--VGNEHLVDVHIGHVRR----KLGDDPAAPRYVITVRGVGYR 246

Query: 220 I 220
           +
Sbjct: 247 M 247


>gi|297192903|ref|ZP_06910301.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151548|gb|EDY66528.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 234

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 33/228 (14%)

Query: 9   ALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL +DG+      DG+  LE F +           R D++ ++  +   G   + L R I
Sbjct: 22  ALERDGFAVTAVPDGLLGLEAFRA----------DRPDIALLDVMV--PGLDGVSLCRRI 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------- 119
           R  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR         
Sbjct: 70  RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHAGGAAG 129

Query: 120 -KVSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 R E G    F      +DG +    GE   L   E R+L    +  G  +++ +
Sbjct: 130 DGGPAGRQEQGGALTFGDLEVDTDGMEVRRAGEPVSLTPTEMRLLLEFSSAPGTVLSRDK 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++  +    +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 190 LLDRVWD-YGWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 232


>gi|296331198|ref|ZP_06873671.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305675924|ref|YP_003867596.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151649|gb|EFG92525.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414168|gb|ADM39287.1| two-component response regulator involved in cell wall processes
           (paired with YvrG) [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 248

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-- 114
           G    E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  
Sbjct: 71  GMSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHL 130

Query: 115 --IYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              Y+  + ++N+  T     FS    +  V GE      +  ++L+Y   +    ++K 
Sbjct: 131 KRTYQSKETNSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKD 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           QI+  ++G +    + N V  HI KLR+K+ R+    + + + R LGY
Sbjct: 191 QIYEKVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGY 237


>gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255297105|gb|EET76430.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 234

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET--GPIRVFSDGRDPEVQGEVFP 148
           G DD V KP    E++ R+  I RR    + S N A      + +  D  +    GE+  
Sbjct: 100 GADDYVTKPFSLEEVITRLRVIMRRGGAAEESTNDATMSYADLTLNDDTHEVTKAGELIE 159

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L   E  +L YLM N+   ++K++I   ++  +D   + NVVES+IS LR+K+
Sbjct: 160 LSPTEFNLLRYLMQNKEVVLSKSKILDNVWH-YDFGGDGNVVESYISYLRRKI 211


>gi|297544467|ref|YP_003676769.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842242|gb|ADH60758.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 231

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 16/152 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAETGPIRVFSDGRDPEV----------QGEVFPLPRRERRILEYLMANRGKRVAKT 171
               AE     V S   D  V          +G V  L   E +IL++L+ N  +   + 
Sbjct: 123 DVPLAE-----VISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++   + G FD    +  +++HI  LR+K+ +
Sbjct: 178 ELIEKVMG-FDYEGYDRTIDAHIKNLRQKIED 208


>gi|269836402|ref|YP_003318630.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269785665|gb|ACZ37808.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 21/175 (12%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ ++        +   + G DD V KP   RE++ARV A+ RR ++
Sbjct: 62  DVCRHIRRSSSVPILMLTARDDEVDRVVGLEIGADDYVTKPFSMRELMARVKALLRRREL 121

Query: 122 SNNRAETGPI---RVFSDGR---DPEV-----QGEVFPLPRRERRILEYLMANRGKRVAK 170
                 + P     VF  G    DP        G    L  +E  +L YL  +RG     
Sbjct: 122 LEQELASNPDGREEVFEIGTLRIDPAAYRVTRNGREVQLTPKEMDLLVYLARHRGNVCPT 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
            +I  A++G +D   +   V  HI  LR+KL      DP     +++ R +GY +
Sbjct: 182 RRILEAVWG-YDYYGDNRTVAVHIHGLREKLEE----DPRQPRLIETVRGVGYRL 231


>gi|228937889|ref|ZP_04100517.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228977345|ref|ZP_04137740.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782322|gb|EEM30505.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228821795|gb|EEM67795.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938368|gb|AEA14264.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 10/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N   +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 119 TNEHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
           L +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KAHF-PIDHHLKTVYGVGYRW 220


>gi|227431461|ref|ZP_03913510.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352827|gb|EEJ43004.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 235

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 25/221 (11%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K+GY  +   DG  +L+ +N    +  L      +V  IE              R IR
Sbjct: 21  LTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVDGIEVL------------RQIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKVSNNRAE 127
           + S VP+I ++   S    +   + G DD V KP  +RE++ARV A  R R  VS    E
Sbjct: 69  SKSDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKSVSQTSEE 128

Query: 128 T---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           T         G + +          G    L  RE ++L YL  + G+ + +  +   ++
Sbjct: 129 TFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFQLLYYLAQHMGQVMTREHLLQQVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           G +D   +   V+  + +LR+K+ +     + + ++R +GY
Sbjct: 189 G-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGY 228


>gi|156976951|ref|YP_001447857.1| positive response regulator for pho regulon [Vibrio harveyi ATCC
           BAA-1116]
 gi|156528545|gb|ABU73630.1| hypothetical protein VIBHAR_05736 [Vibrio harveyi ATCC BAA-1116]
          Length = 220

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ V  LP   +    VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  
Sbjct: 57  GDSVQSLPEW-KKIKDVPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQL 115

Query: 117 RRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R    +     ++  T  + +    R+   +GE+  L R E  +L +L +N G+   + +
Sbjct: 116 RAPDAAEQGNADKVMTKDLEIDRATREVVFKGEMITLTRTEFDLLLFLASNLGRVFTRDE 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 176 LLDHVWG-YNHFPTTRTVDTHVLQLRQKLP---GLE-IETLRGVGYKM 218


>gi|66047021|ref|YP_236862.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257728|gb|AAY38824.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 229

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +   +   NS E  E    S R D+  ++  +       +
Sbjct: 4   VLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEIEALSGRHDIVVLDIMM--PRISGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA SQVP+I ++        +   + G DD V KP    E++AR+ AI RR++ 
Sbjct: 62  EVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRA 121

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +      +  + G + ++   R+   QG    L   E  +LE L  + G+ V+K  +  
Sbjct: 122 VSVVDAVRDVIQAGELMLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSM 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
              G    A  +  ++ HIS +R KL  RN      + S R LGY +
Sbjct: 182 NALG-RPLARYDRSIDVHISSIRHKLGPRND-NQSWIQSVRNLGYML 226


>gi|15611222|ref|NP_222873.1| putative transcriptional regulator [Helicobacter pylori J99]
 gi|4154653|gb|AAD05721.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R I     +P+I  S    ++  +   D G DD + KP   +E+LAR+ ++ RR  
Sbjct: 61  LEVCRRISKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSH 120

Query: 121 VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +E G   +F    D R+  +  +   L R E  IL  L++ +G   ++  I    
Sbjct: 121 KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI---- 176

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDW 222
             +  E++        I  +  +LR+K+  +P     + S R +GY +++
Sbjct: 177 -AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKLEY 225


>gi|34556531|ref|NP_906346.1| putative two-component regulator [Wolinella succinogenes DSM 1740]
 gi|34482245|emb|CAE09246.1| PUTATIVE TWO-COMPONENT REGULATOR [Wolinella succinogenes]
          Length = 222

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 19/199 (9%)

Query: 33  EFEEWLQSSARE----------DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           EFE  L S+A+E          D+  ++  L G G+    L  +  A    P I  +   
Sbjct: 26  EFEITLASNAKEALDLAYERPFDLWILDVKLPG-GDGFSLLKSLREAGKTTPAIYTTSLH 84

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AETGPIRVFSDGRDP 140
           +LQ     ++SG DD + KP   +E+L R+ A+ +R          E G    F  G   
Sbjct: 85  TLQDLESGYESGCDDYLKKPFELKELLVRIKALLKRRFAHKQEEFEELGGGWRFCLGSKR 144

Query: 141 EVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
             QGE ++ L  +E  +L   + N+ + ++  +IF  ++  + E+  E  + +++    K
Sbjct: 145 LYQGEDLYSLASKEIELLSLFLQNKNRLLSHEEIFDRLWS-YGESPSEMSLRAYV----K 199

Query: 200 KLRNKLGFDPVDSKRFLGY 218
            LR  LG + + ++R  GY
Sbjct: 200 NLRKILGKERILNQRGEGY 218


>gi|295093907|emb|CBK82998.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 236

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 7/149 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S +P++ ++         + +D G DD + KP    E   +V A+ RR KV
Sbjct: 69  EACQQIREFSSIPVLFLTAKTKEPDQNEAYDVGGDDFLAKPFTQSEFNRKVNALIRRYKV 128

Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              ++ET P       I + S  R     GEV  L  +E  +L +L+ +RGK  +   ++
Sbjct: 129 YRGKSETDPKNISVGNINIDSFKRIVIKNGEVIKLTDKEYALLFFLVEHRGKPWSLEALY 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
             I+         N V  HI +LR+K+ +
Sbjct: 189 ENIWQEKYLPSSSNTVMVHILRLRQKIED 217


>gi|269960301|ref|ZP_06174675.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834912|gb|EEZ88997.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 236

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 22/230 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           V+I+D + + +  I +   DG   E F +  E   +LQ ++   +        G G    
Sbjct: 8   VIIEDESAIAENLIHVLEMDGYHAEWFATAGEGLAFLQHNSAALLVLDVGLPDGNG---F 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S +P+I ++        +   + G DD V KP   RE+LAR   I  R+K 
Sbjct: 65  ELCKTIREFSDIPIIFLTARSDEIDRVVGLEIGADDYVTKPFSPREMLAR---IKLRIKA 121

Query: 122 SNNRAETGPIRVFSDGRDPE-------------VQGEVFPLPRRERRILEYLMANRGKRV 168
                E  P   F+    P+             V G++  L   E +IL+ L++     +
Sbjct: 122 KAPMMEHKP-ETFAVPEQPQFNHDLVAQNFDYGVGGQMLGLTAVEFKILDKLISVSSNVL 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++ Q+  A   +  EA  E  +++HI  +R KL+     + + +KR  GY
Sbjct: 181 SREQLMVAA-DMAPEAAYERNIDTHIKAIRHKLKPFGMSERICTKRGFGY 229


>gi|257886294|ref|ZP_05665947.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257822150|gb|EEV49280.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 222

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE- 127
           A   +P++ I+     +     F  G DD + KPI   E++ RV A+ RR K++ + +  
Sbjct: 70  ARFDMPVLMITAKADFENKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKINYSSSLI 129

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G  ++  D            LP++E  +L  L++   K   + Q+   I+GL D   EE
Sbjct: 130 IGQTKLELDTYTVLQDQHSLILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL-DTNTEE 188

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++ HI +LR +      F  + + R LGY
Sbjct: 189 RTIDVHIKRLRTRFEKTEDFQII-TVRGLGY 218


>gi|241889083|ref|ZP_04776387.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
 gi|241864332|gb|EER68710.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
          Length = 234

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 26/223 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  +  +DG           E+ ++ +  ++   I   L+   +  +E+ R +RA
Sbjct: 23  LKKEGYDVIVANDG-----------EKAVELAFNDNPDLILLDLMLPKKDGMEVCREVRA 71

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
              +P+I ++   S    +   + G DD V KP   RE++ARV    RR  V+  + E  
Sbjct: 72  KKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR--VTKQQEEVA 129

Query: 130 P-----------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       I ++ +    +  GE   L RRE  +  YL  +RG+ + +  +   ++
Sbjct: 130 EEKNGGDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTRENLLQTVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           G +D   +   V+  + +LR+K+ +     + + ++R +GY I
Sbjct: 190 G-YDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGYFI 231


>gi|229199233|ref|ZP_04325911.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228584250|gb|EEK42390.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 222

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 59  EICRKIRLVKMTPIIIVTDNISSEDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSN- 117

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 118 CNQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 178 VWG-HNVVVNPNVVDLYIGYVRKKLKCEKKNRYIQTIHGRGYSM 220


>gi|256821305|ref|YP_003145268.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256794844|gb|ACV25500.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 220

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R +R +S +P+I  +        L    SG DD + KP   RE+ ARV A+ RR  
Sbjct: 62  LSLCREVRKNSNLPIIMATARVEEIDRLLGLSSGADDYICKPFSPREVCARVVAVLRR-- 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                A    + +  D       G+V  L   E R++  L+   G+  ++ Q+  AIY  
Sbjct: 120 AEGTPALQDKLEIDEDKYQVRAGGQVLELTALEFRLITTLVKQPGRVFSRDQLMDAIYT- 178

Query: 181 FDEAVEENVVESHI 194
               V E  ++SH+
Sbjct: 179 DQRLVSERTIDSHV 192


>gi|206973121|ref|ZP_03234043.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|229182338|ref|ZP_04309612.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229191798|ref|ZP_04318772.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|206732005|gb|EDZ49205.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|228591672|gb|EEK49517.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228601147|gb|EEK58694.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 238

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 12/167 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR   Q P++ +S        +     G DD + KP    EI+ARV A  RR   
Sbjct: 63  QLIKKIRETLQFPILILSAKSQEVDKIIGLGIGADDFITKPFSALEIIARVQAHLRRSYE 122

Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N++A  G  +    G               E   L   E +IL   M   G+   K QI
Sbjct: 123 FNDKAVKGKEKQIHMGDLVLDHHSCTLYKSSETITLSATEYKILTLFMEEPGRIFTKKQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK--RFLGY 218
           F +++  +    ++N +  HIS+LR+KL +    +PV  K  R LGY
Sbjct: 183 FESVWSDY-YCADDNTIMVHISRLREKLEDSPK-NPVYIKTIRGLGY 227


>gi|119490531|ref|ZP_01622973.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119453859|gb|EAW35015.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 98/208 (47%), Gaps = 19/208 (9%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV-PLIGISDY 81
           G  ++G  + +  +WL      D+   +  L       +EL R  R+  +  P++ ++  
Sbjct: 24  GHIVDGVETGDTAQWLMGETDYDLLIFDWML--PAVSGVELCRTYRSMGKTAPVLLLTAK 81

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRV 133
            +    +   DSG DD + KPI   E+LAR+ A+ RR        LK+ +   E    R+
Sbjct: 82  DTTADKVIGLDSGADDYLVKPIDLLELLARIRALGRRSPHWLGDSLKLGD--LELNLARL 139

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
                + +VQ  V     RE ++LEY + +  + +++ QI  +++  +D   E N V + 
Sbjct: 140 CVQREEKQVQLSV-----RESQLLEYFLRHPNQVLSRDQIEQSLWE-WDNPPESNAVSTL 193

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +LR++L      + +++   LGY I+
Sbjct: 194 VRRLRQRLGQVDAANWIETVYGLGYRIN 221


>gi|57234165|ref|YP_181773.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224613|gb|AAW39670.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 227

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 15/145 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S+VP+I ++    L   L   + G DD + KP   +E++AR     RR   S +
Sbjct: 66  REIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRR---SEH 122

Query: 125 RAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + P+ V       ++ R  ++ GE   L   E  IL  L A+ G+  ++ QI   + 
Sbjct: 123 TPASEPVLVIDRLEIDTERRLVKMDGENIDLTATEFDILANLAASPGRVFSRMQILDKL- 181

Query: 179 GLFDEAVE--ENVVESHISKLRKKL 201
               EA E  E  ++SHI  LRKK+
Sbjct: 182 ---GEAYEGYERTIDSHIKNLRKKI 203


>gi|85715803|ref|ZP_01046782.1| DNA-binding response regulator [Nitrobacter sp. Nb-311A]
 gi|85697456|gb|EAQ35335.1| DNA-binding response regulator [Nitrobacter sp. Nb-311A]
          Length = 221

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 31/232 (13%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-------GFNSLEFEEWLQSSAREDVSAIEAFLI 54
            +LI+D A+     +   G +G++++       G  +L   E   ++A  D+   E    
Sbjct: 3   LLLIEDDAMFGKALVRGLGQNGMTVDWIRDGSDGLAALTRAE--HAAALLDIGLPEM--- 57

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
             G ++L+  R  R    + +I   D+  ++  +   D G DD + KP   R +LAR+ A
Sbjct: 58  -SGFEILKAMRSSRRMPPILIITARDH--VEDIVAGLDLGADDYLIKPFDLRTLLARIRA 114

Query: 115 IYRRLKVSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           + RR     +   T       P    +  RD E       L  RE  +L  LM + G  +
Sbjct: 115 VVRRTNARTSALMTSKDIALNPSTYVATFRDVEAT-----LSAREFSVLYALMEHPGTIL 169

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++QI   IYG + E ++ N V+  I  LRK    K G D + + R  G+ +
Sbjct: 170 SRSQIEMRIYG-WGEEIQSNAVDVVIHGLRK----KFGKDMIHNIRGAGWVV 216


>gi|42519762|ref|NP_965692.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116630289|ref|YP_815511.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|227889299|ref|ZP_04007104.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238853710|ref|ZP_04644077.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|268320126|ref|YP_003293782.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300362908|ref|ZP_07059078.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|41584052|gb|AAS09658.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116095871|gb|ABJ61023.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|227850101|gb|EEJ60187.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238833646|gb|EEQ25916.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|262398501|emb|CAX67515.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300352958|gb|EFJ68836.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|329668013|gb|AEB93961.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 228

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 88/169 (52%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S++P++ +S   S    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  IEVIKEVRKDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQ 120

Query: 121 --VSNNRA---ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
             V +++    E GP+ +  D  + + + G+V  L   E  IL Y++A+   RV +  +I
Sbjct: 121 KEVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGIL-YMLASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 180 FERVWQQ-ESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|313205216|ref|YP_004043873.1| two component transcriptional regulator, winged helix family
           [Paludibacter propionicigenes WB4]
 gi|312444532|gb|ADQ80888.1| two component transcriptional regulator, winged helix family
           [Paludibacter propionicigenes WB4]
          Length = 227

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 13  DGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKG-EKVLELPRIIR 68
           D  +A    DG+  EGF      E E+ LQ+  R     I   +  KG     E    IR
Sbjct: 11  DANLAFMLTDGLEAEGFEVQHVDEGEKVLQTMTRFCPCIILLDVNLKGVMNGFETGAKIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNR 125
             +Q+P+I I+     +     F  G  D + KP   RE++ R+  + +R +   + +  
Sbjct: 71  QTAQLPIIFITSRTQAEDLQTGFQLGNVDYLKKPFGMRELVLRINELLQRNERKTICDEV 130

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           +  G     +  +  +++ E   LP+ E  +L  L  NRG+ ++K +I   ++   D   
Sbjct: 131 SRIGNYLFSASEQSLQLETEKIHLPKNECAVLNMLFKNRGRVLSKKEILETVWNEPDLKS 190

Query: 186 EENVVESHISKLRKKLRN 203
           +E  + + +  LR KL N
Sbjct: 191 KEPSLNNILFSLRSKLSN 208


>gi|301510487|ref|ZP_07235724.1| response regulator [Acinetobacter baumannii AB058]
          Length = 231

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           +P++ ++   SL   L  F +G DD + KP    E++ R+ A+ +R   +V++++ +   
Sbjct: 77  IPVLMLTARDSLDDKLKGFTAGTDDYLVKPFDFNELVMRIRALIKRAAGEVTHHKIQIHD 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + S  +     G    LP  + ++L+ LM    K V K ++   ++G  DE  E + +
Sbjct: 137 LILDSATQTVVRAGNNIELPPIQFKLLKILMRQSPKVVTKQELMMELWG--DEEPESDAL 194

Query: 191 ESHISKLRKKLRNKLGFDP 209
            SHI  LRK +     FDP
Sbjct: 195 RSHIYNLRKMVDKP--FDP 211


>gi|297537805|ref|YP_003673574.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297257152|gb|ADI28997.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 226

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D  ++KDG    F   G +++     E    L +    DV  ++  L    G +V
Sbjct: 3   LLLVEDDLILKDGLERSFVKSGYAVDVICDGEGANKLLTYQEYDVIVLDLGLPKLSGFEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R+    S  P++ ++     Q  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 63  LK--RLRARGSNTPVLILTALEDTQNRVKGLDLGADDYLTKPFELAELEARVRALIRR-G 119

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           VS   A+   G +   +  R          L  RE  +LE LM    K V+KT+I   + 
Sbjct: 120 VSGGSAKISFGGLTFDTSNRQCMAGDIALSLSAREMALLELLMLKAAKVVSKTKIMEHLC 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
             +DE + EN VE  +S+LRKKL     FD  + + R LGY
Sbjct: 180 S-WDEEISENAVEVIVSRLRKKLNV---FDIEIRTIRGLGY 216


>gi|229026557|ref|ZP_04182906.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228734734|gb|EEL85379.1| DNA-binding response regulator [Bacillus cereus AH1272]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR + 
Sbjct: 62  EICRQIRLVKTTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSEY 121

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  N       + +F D     V+  GE   L +RE  +L +L+ N+   +++  + + +
Sbjct: 122 IQQNETNFFQFKDLFVDASSNIVKKSGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 178 YG 179
           +G
Sbjct: 182 WG 183


>gi|50084792|ref|YP_046302.1| putative two-component system sensor protein (ColR-like)
           [Acinetobacter sp. ADP1]
 gi|49530768|emb|CAG68480.1| putative two-component system sensor protein (ColR-like)
           [Acinetobacter sp. ADP1]
          Length = 228

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 69/131 (52%), Gaps = 4/131 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           +P++ ++   ++   L  F +G DD + KP    E++AR+ A+ +R   +VSN + +   
Sbjct: 77  LPVLMLTARDTVGDKLKGFSAGADDYLVKPFDFNELVARIRALIKRASGEVSNTQLKIHD 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + +  +     G+   LP  + ++L+ LM +  K + K ++   ++G  +E  E + +
Sbjct: 137 LVLDTSTQTLTRMGQTIELPPIQFKLLKILMRHSPKVITKQELIMELWG--EEEPESDAL 194

Query: 191 ESHISKLRKKL 201
            SHI  LRK +
Sbjct: 195 RSHIYNLRKMI 205


>gi|94311118|ref|YP_584328.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354970|gb|ABF09059.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Cupriavidus metallidurans CH34]
          Length = 235

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
           Q+P+I ++     Q  +   ++G DD V KP   +E+LAR+ A+ RR         + ++
Sbjct: 76  QIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R +    RV        ++ ++ P    E R+L +LM +  +  +++Q+   ++G  D
Sbjct: 136 GLRLDPATHRVTGQDDGGPIKLDLGPT---EFRLLHFLMTHPERVHSRSQLLDQVWG--D 190

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 191 HVFVEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229


>gi|325261323|ref|ZP_08128061.1| DNA-binding response regulator KdpE [Clostridium sp. D5]
 gi|324032777|gb|EGB94054.1| DNA-binding response regulator KdpE [Clostridium sp. D5]
          Length = 244

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 16/148 (10%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA S  P+I IS   + +  +   D G DD + KP    E+LAR+    R     +N
Sbjct: 68  REVRAWSSTPIIVISARSAEKEKVAALDLGADDYITKPFGTSELLARIRTSLRH----SN 123

Query: 125 RAETGP---IRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R  T     IR +  G        R   + GE   L   E +I+ YL  N GK +    I
Sbjct: 124 RLYTESSLYIRPYQCGSMLLDFSKRILTIDGEEIHLTPIEYKIVAYLAQNSGKVITYAAI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            S ++G + ++ +  ++  +++ +R+KL
Sbjct: 184 LSNVWGPYADS-DNKILRVNMANIRRKL 210


>gi|317493853|ref|ZP_07952270.1| heavy metal response regulator [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918180|gb|EFV39522.1| heavy metal response regulator [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 226

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 35/228 (15%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELP 64
           +RAL + G+      DG   EG + +LEF+         D   ++  L G  G +VLE  
Sbjct: 17  NRALSESGFTVDVSADGA--EGLHYALEFDY--------DAIILDVMLPGMDGYRVLE-- 64

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
             +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR      
Sbjct: 65  -GVRAAKQTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRATDGA 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L++ +   +    RVF  G   E+  + F L       L  L  ++G+ ++K  I 
Sbjct: 124 DITQLQIHDLHLDLLARRVFRAGTRLELTAKEFSL-------LSLLARHQGEILSKMMIA 176

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I+ + FD   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 177 EQIWDMNFDS--DANVVEVAIKRLRAKVDAPFDVKLLHTVRGMGYVLE 222


>gi|309775903|ref|ZP_07670896.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916325|gb|EFP62072.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 231

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 16/165 (9%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R H+  P+I +S+Y  +   +     G DD V KP    E+L R+     +L++
Sbjct: 62  EVLRQMRLHTSTPIIILSNYTEVDRRIQGLRMGADDYVCKPFSFDELLLRI-----QLRI 116

Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++R  T      G + + +  +    QG      R E  IL  L +  G+     QI+ 
Sbjct: 117 QDSRKRTAVVLNYGELIIDTGTQKVTYQGNTIFFNRTEFEILSLLASQPGRIYTYEQIYD 176

Query: 176 AIYGLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           A++    E + E  + +++ ++++R KL    G   + + R  GY
Sbjct: 177 AVW---KEPLNESRHTLQARVAEVRIKLLTLTGLQYIITVRGKGY 218


>gi|315501605|ref|YP_004080492.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315408224|gb|ADU06341.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 226

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 17/149 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R +R  + VP+I +S     +  +   D+G DD V KP    E+LAR+ A+ RR      
Sbjct: 65  RGLRGWTAVPIIVLSGRAGSEDKVAALDAGADDYVTKPFGVDELLARIRAVTRRLAPATP 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L++  N  +     V    RD  V+ ++ P    +  +LE L+ N GK V++ Q+ 
Sbjct: 125 AVPALRIGRNTVDLADRTVT---RDDGVEVKLTPT---QWAMLEKLLRNPGKLVSQRQLL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
             ++G  +   E N +  ++++LR+KL +
Sbjct: 179 HDVWG-PEYHHETNYLRQYMAQLRRKLED 206


>gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 244

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 7/136 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            VP++ ++   +++  +    +G DD V KP    E++ARV A+ RR       A    +
Sbjct: 85  HVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALLRRSGHREQAAAEPAV 144

Query: 132 RVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
             ++D    E   EVF       L   E ++L  L+ N  + ++K Q+ SA++  +D A 
Sbjct: 145 LKYADLELNEDSYEVFKAGQAVQLSLTEFKLLRCLLENAERVMSKGQLLSAVWN-YDFAG 203

Query: 186 EENVVESHISKLRKKL 201
           +  VVES++S LR+K+
Sbjct: 204 DAGVVESYVSYLRRKV 219


>gi|187927399|ref|YP_001897886.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241661925|ref|YP_002980285.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309779901|ref|ZP_07674655.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|187724289|gb|ACD25454.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240863952|gb|ACS61613.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308921260|gb|EFP66903.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 24/215 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L  +GY  +   DG +  G   +E   W          A+   L+  G   LE+ R  R 
Sbjct: 24  LRDEGYAVVHAADGHA--GQREMERGNW---------DALVLDLMLPGIDGLEICRRARV 72

Query: 70  HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126
            ++  P+I IS   +    +   + G DD + KP    E++ARV A+ RR      N R 
Sbjct: 73  QARYTPIIIISARSTEVHRILGLELGADDYLAKPFSVLELVARVKALIRRTDALARNARM 132

Query: 127 ETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           E+G      + +    R+  V G+   L  RE  +L +   + GK  ++  + + ++G +
Sbjct: 133 ESGSLTLGNLEIEPLAREVRVDGKPIELTPREFDLLHFFARHPGKVFSRLDLLNQVWG-Y 191

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
                E+ V +HI++LR K+      DP   +R L
Sbjct: 192 QHDGYEHTVNTHINRLRAKVE----VDPAQPRRIL 222


>gi|52082553|ref|YP_081344.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52787948|ref|YP_093777.1| YxdJ [Bacillus licheniformis ATCC 14580]
 gi|52005764|gb|AAU25706.1| two-component response regulator. potential cognate sensor kinase
           is YxdK [Bacillus licheniformis ATCC 14580]
 gi|52350450|gb|AAU43084.1| YxdJ [Bacillus licheniformis ATCC 14580]
          Length = 235

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR  S  P++ IS        +   ++G DD + KP H   ++A++ +  RR      
Sbjct: 65  RQIRQESICPVLFISARTGEMDQVMALENGGDDFITKPFHAEIVMAKIRSQLRRAYGEYA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K      E   +R++ +  +    G+   L ++E  I+E LM    +   +  + + ++
Sbjct: 125 AKAEERLLEKEGLRLYPERLELTFAGQTAALTKKEADIIESLMERHPRISGREDLLAKLW 184

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
              D+A V+EN +  +I+++RKK + +LG  D V++ R  GY ++
Sbjct: 185 D--DQAYVDENTLNVNITRVRKKFQ-ELGIEDAVETVRGAGYRLN 226


>gi|52144960|ref|YP_081869.1| response regulator [Bacillus cereus E33L]
 gi|51978429|gb|AAU19979.1| response regulator [Bacillus cereus E33L]
          Length = 237

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 121 VSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  + A        +        +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 123 VLGSDANIQEKTTLTFKGLLIDLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   +  +E +N V  HI KLRKK+      DP + K
Sbjct: 183 LFRNVWD--NNYIEDDNTVMVHIRKLRKKIE----VDPSNPK 218


>gi|47569985|ref|ZP_00240648.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47553333|gb|EAL11721.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 254

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 97  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 156

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 157 IQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 215

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ H+++LR+K + +     + + R LGY ++
Sbjct: 216 NERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLE 251


>gi|330971077|gb|EGH71143.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 186

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IRA SQVP+I ++        +   + G DD V KP    E++AR+ AI RR++
Sbjct: 18  IEVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVR 77

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +      +  + G + ++   R+   QG    L   E  +LE L  + G+ V+K  + 
Sbjct: 78  AVSVVDAVRDVIQAGELMLWPGKREARWQGATLELTGNEFCLLEELARHAGQLVSKQNLS 137

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
               G    A  +  ++ HIS +R KL  RN      + S R LGY +
Sbjct: 138 MNALG-RPLARYDRSIDVHISSIRHKLGPRND-NQSWIQSVRNLGYML 183


>gi|319780627|ref|YP_004140103.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166515|gb|ADV10053.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 224

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + + +RA   + P I ++    +   ++  ++G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LSMVKAVRAAGVRTPAIFLTSVGGIDDRVEGLEAGGDDYLVKPFAFSELLARINALGRRP 119

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +    R    +G+   L  RE  +LE LM   G+ + +T +   +
Sbjct: 120 AAQEQKTVLRVADLEMDLIMRRVTRRGQPIDLQPREFSLLEVLMRGEGRVITRTMLLERV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   FD     +VVE+HIS+LR K+        + + R  GYS+
Sbjct: 180 WDFHFDP--RTSVVETHISRLRAKVDKPFETQLIHTVRNTGYSL 221


>gi|320108041|ref|YP_004183631.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319926562|gb|ADV83637.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 224

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 105/220 (47%), Gaps = 23/220 (10%)

Query: 18  LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIE--------AFLIGKGEKVLE----L 63
           L  +D + ++GF   SL    W   +A +  SA+E        A +I  G   L+    +
Sbjct: 4   LLVEDELEIQGFVKQSLIDAGWDVQTADDATSALEEVTKHVFDALIIDLGLPDLDGIDLI 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R+ R+  + P++ +S   S+   +   + G DD + KP    E++AR+  + R   +++
Sbjct: 64  LRLRRSGIKAPVLILSARRSVDERVKGLELGGDDYLTKPFAAAELVARIRNLVR---LAS 120

Query: 124 NRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +     IR+      +  R     G++  L  +E  +LEYL  N G+ V ++ + + ++
Sbjct: 121 QKENISHIRIHDLEIDAVKRRATRNGQLLNLTPQEFLLLEYLCRNAGRVVTRSMLLAEVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G+  +  + N+V+ H+ +LR K+  +     + + R +GY
Sbjct: 181 GMQFQP-DTNMVDVHMYRLRGKIDPEGSESRIKTLRGVGY 219


>gi|255318312|ref|ZP_05359547.1| transcriptional regulatory protein RstA [Acinetobacter
           radioresistens SK82]
 gi|262379056|ref|ZP_06072212.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255304624|gb|EET83806.1| transcriptional regulatory protein RstA [Acinetobacter
           radioresistens SK82]
 gi|262298513|gb|EEY86426.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 238

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 12/180 (6%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           S + D+  ++  L   G   L + R +R H   P++ ++        +   + G DD V 
Sbjct: 49  SEQPDMVVLDVML--PGADGLTVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVP 106

Query: 101 KPIHHREILARVAAIYRRLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155
           KP+  R +LAR+ A+ RR   +       R E   + + + GR   + GE+      E  
Sbjct: 107 KPVQPRVLLARIRALLRRTDKTVEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYD 166

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +L  L +N G+ +++  IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 167 LLWLLASNAGRILSREDIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 221


>gi|160913591|ref|ZP_02076281.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
 gi|158434052|gb|EDP12341.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
          Length = 250

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ ++IR     P+I ++        +     G DD + KP +  E++ARV A  RR  
Sbjct: 83  FEICKMIREKYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYT 142

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N   +   I  F      +D     +  +   L   E  IL YL  NRGK V   ++F
Sbjct: 143 KYNQPNDNVNIIDFKGLIIDNDSHRVSLYDQPLMLTPIEFNILWYLCKNRGKVVTSEELF 202

Query: 175 SAIY--GLFDEAVEENVVESHISKLRKKLR 202
            A++    FD     N V  HI +LR+K+ 
Sbjct: 203 EAVWKEKYFD---SNNTVMVHIRRLREKMH 229


>gi|49481195|ref|YP_036138.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196039763|ref|ZP_03107067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|49332751|gb|AAT63397.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196029466|gb|EDX68069.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 229

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP    E+ AR+ ++ RR++V + +A T   GP  +          G++  L 
Sbjct: 95  GADDYIAKPFSPVELTARIQSLLRRIEVHDEKANTITSGPFSLNIIEERLYKSGQLVELT 154

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E  IL+YLM    K V++ +I + I+G  +   E  VV+ ++ +LR+K+
Sbjct: 155 PTEYMILQYLMNQASKPVSRDEILNMIWGT-NYVGETKVVDVNMRRLRQKI 204


>gi|332673006|gb|AEE69823.1| DNA-binding response regulator [Helicobacter pylori 83]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R I     +P+I  S    ++  +   D G DD + KP   +E+LAR+ ++ RR  
Sbjct: 61  LEVCRRISKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSH 120

Query: 121 VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +E G   +F    D R+  +  +   L R E  IL  L++ +G   ++  I    
Sbjct: 121 KKEEVSEPGDANIFRMDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI---- 176

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDW 222
             +  E++        I  +  +LR+K+  +P     + S R +GY +++
Sbjct: 177 -AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKLEY 225


>gi|315186290|gb|EFU20051.1| two component transcriptional regulator, winged helix family
           [Spirochaeta thermophila DSM 6578]
          Length = 226

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 12/181 (6%)

Query: 48  AIEAFLIGKGEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           AI   L+  G   LE+ R++R     S +P++ ++        +   + G DD + KP  
Sbjct: 47  AIILDLMLPGMSGLEVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFS 106

Query: 105 HREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEY 159
            R +LAR+ A+ +R      R++  PI V     DP      V+G    L   E  IL +
Sbjct: 107 PRILLARLKAVLKRTHPPEGRSDE-PIVVGELVIDPHRYSVRVRGREVILSATEFAILSF 165

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L  N G   ++ QI  A+ G  D  V E  V+  I  +RKKL +    D + + R +GY 
Sbjct: 166 LARNPGWVFSRQQIIDAVKG-EDYPVTERAVDVQILSIRKKLGD--ARDYIQTVRGVGYR 222

Query: 220 I 220
           +
Sbjct: 223 L 223


>gi|295395813|ref|ZP_06806001.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971348|gb|EFG47235.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 11/183 (6%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           S R D+  ++  L GK    LE+ R IR  S VP++ ++        +   +SG DD V 
Sbjct: 44  SVRPDLILLDLMLPGKDG--LEVCREIREESGVPIVMLTAKSDTMDVVKGLESGADDYVP 101

Query: 101 KPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
           KP   +E++ARV A   RL++S   A    + G + +   G   E  G+   L   E  +
Sbjct: 102 KPFKPKELVARVRA---RLRMSEPSAPEILKVGDVSIDVAGHTVEKAGKPVSLTPLEFEL 158

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRF 215
           L  L     +  ++  +   ++G +  A +  +V  H+ +LR K+ ++    D V + R 
Sbjct: 159 LVALARKPWQVFSRETLLEEVWG-YRHAADTRLVNVHVQRLRSKIEKDPEKPDIVVTVRG 217

Query: 216 LGY 218
           +GY
Sbjct: 218 VGY 220


>gi|262392415|ref|YP_003284269.1| putative two component response regulator transcription regulator
           protein [Vibrio sp. Ex25]
 gi|262336009|gb|ACY49804.1| putative two component response regulator transcription regulator
           protein [Vibrio sp. Ex25]
          Length = 230

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 20/221 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + L++ GY+     DGV  +G      EE+       D+  ++  L    G +VL   R 
Sbjct: 18  KGLIESGYVVDLVHDGV--DGLYHATSEEY-------DLILLDIMLPKLDGWQVLNTLRS 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
              H+  P+I ++    ++  +  F+ G +D V KP    E+LAR+  ++R    +   A
Sbjct: 69  SGIHT--PVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHISAQVVA 126

Query: 127 ETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
               +RV     D         G+   L  +E  +LE LM   G+ +++T I S ++ + 
Sbjct: 127 SPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIASLVWDMN 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + NV++  + +LR K+        + + R +GY ++
Sbjct: 187 FDS--DTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLE 225


>gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 224

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++  
Sbjct: 121 KTEAAVSHEVIEAGEIVICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G F+       V+  + +LRKKL
Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKL 205


>gi|229175788|ref|ZP_04303294.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228607739|gb|EEK65055.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 222

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 7/146 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 59  EICRQIRLVKTTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDY 118

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+   +   L +RE  +L +L+ N+   +++  + + 
Sbjct: 119 -NQQNETNFFQFKDLFVDASSNIVKKGSKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202
           ++G ++  V  NVV+ +I  +RKKL+
Sbjct: 178 VWG-YNVVVNPNVVDLYIGYVRKKLK 202


>gi|228477430|ref|ZP_04062066.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
 gi|228250865|gb|EEK10053.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
          Length = 235

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR +
Sbjct: 61  LEVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTE 120

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                AE            G + +  D    + +G    L  RE  +L +L  + G+ + 
Sbjct: 121 TIETAAEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +  +   ++G +D   +   V+  I +LR+K+ +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213


>gi|212712462|ref|ZP_03320590.1| hypothetical protein PROVALCAL_03556 [Providencia alcalifaciens DSM
           30120]
 gi|212684919|gb|EEB44447.1| hypothetical protein PROVALCAL_03556 [Providencia alcalifaciens DSM
           30120]
          Length = 227

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L R +R  S +PLI +S        +   D+G DD + KP    E+LARV    RR  
Sbjct: 63  LDLIRDLRQWSSIPLIVLSAREEESQKVAALDAGADDYLTKPFGISELLARVRVALRRFG 122

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   + T   G + V    R      E   L   E R+L  L+AN GK + +  +   +
Sbjct: 123 KAGQESPTFQFGDVTVDFINRIVTKGSEELHLTPIEFRLLSELVANSGKVLTQRHLLLQV 182

Query: 178 YGLFDEAVEEN-VVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +G     VE N  +  ++  LR+KL N    DP   +  L
Sbjct: 183 WG--PSYVEHNHYLRIYMGHLRQKLEN----DPARPEHLL 216


>gi|149914856|ref|ZP_01903385.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
 gi|149811044|gb|EDM70881.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
          Length = 229

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETG 129
            VP++ +S        +   ++G DD V KP    E++ARV A+ RR + S    R E  
Sbjct: 79  NVPILMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRALLRRSRPSAVGERLEYE 138

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I + ++        +   L   E R+L   M   G+  ++ Q+   ++G  D  V+   
Sbjct: 139 DIVLDAETHRVTRSDKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG-RDIYVDTRT 197

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 198 VDVHIGRLRKALCQHGGGDPLRTVRGAGYAL 228


>gi|319428570|gb|ADV56644.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 241

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 9/142 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---N 123
           IR+    P+I ++        L     G DD V KP +  E++ARV A+ RR + +   N
Sbjct: 79  IRSRGDTPVIMLTALDQDIDKLMGLRLGADDYVVKPFNPAEVVARVQAVLRRARTNTPIN 138

Query: 124 NRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                G  ++  D  +  V    Q +   L   E ++L  LM    +  ++ ++   I  
Sbjct: 139 KMLRVGQFQIDLDSHEASVICNGQQQALDLTLTEFKLLACLMRTPKRAFSREELL--INC 196

Query: 180 LFDEAVEENVVESHISKLRKKL 201
           L +   +E  V+SHISKLRKKL
Sbjct: 197 LPEGDTQERTVDSHISKLRKKL 218


>gi|160896382|ref|YP_001561964.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361966|gb|ABX33579.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 253

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
            P++ ++    ++  +   D G DD + KP    E+ AR+ A+ RR   +  +A      
Sbjct: 105 TPVLILTARDQVRERIAGLDLGADDYLVKPFDIDELEARLRAMLRR---AGGQAAPVIRH 161

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + V    R     G++  +  RE  +L  L+  RG+ +++ QI   +Y  +  AVE N
Sbjct: 162 GELEVDPAARTVRRDGKLVEMSPREFSVLWVLLQARGRVLSRQQIEEHLYS-WGTAVESN 220

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            VE HI  LRKKL N      + + R +GY
Sbjct: 221 AVEVHIHHLRKKLGNA----SIVTMRGVGY 246


>gi|314935217|ref|ZP_07842570.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656552|gb|EFS20291.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
          Length = 233

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 18/175 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +E+ R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  
Sbjct: 58  GRDGMEVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 117 RRLKV--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           RR           + N      I V+ D    + +GE   L  RE  +  YL  + G+ +
Sbjct: 118 RRHYAQPAQESEGTTNEIAIKDIVVYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVM 177

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            +  +   ++G +D   +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 178 TREHLLQTVWG-YDYFGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227


>gi|229493282|ref|ZP_04387073.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
 gi|229319784|gb|EEN85614.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
          Length = 249

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 67  IRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           IR+ S VP L+G +     +   +   +G   VV +P +    +A  A I       ++ 
Sbjct: 92  IRSRSDVPILVGAAKSGDERIVREVLAAGASAVVARP-YDITTIAPFAGITALSLAEDSV 150

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              GPIRV   G +  V      L +RE  +L YL+  RG   ++++I  A++G    + 
Sbjct: 151 VTAGPIRVNPSGYETRVGNREVQLTQREFELLVYLIKRRGHVASQSEISLAVWG---HSA 207

Query: 186 EENVVESHISKLRKKLRNKLGFD 208
           E N V  H+    K+LR KLG D
Sbjct: 208 ETNTVAVHV----KRLREKLGSD 226


>gi|228989788|ref|ZP_04149768.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228769935|gb|EEM18518.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 230

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR+ S VP+I ++        +     G DD + KP H  E+LAR+ A+ RR   SN   
Sbjct: 67  IRSFSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVLRR---SNQHE 123

Query: 127 ETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           +     +  D       V  +   L   E  +L   + +    +++ Q+   I+GL D  
Sbjct: 124 QLRYKGILWDEAKHFISVYEQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL-DTN 182

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
            E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 183 TEDRTVDSHIRNLRDKLR-KNNF-PIDEHLKTVYGVGYRW 220


>gi|229075036|ref|ZP_04208038.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|229097136|ref|ZP_04228101.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|229103204|ref|ZP_04233889.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|229116104|ref|ZP_04245496.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228667334|gb|EEL22784.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228680228|gb|EEL34420.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228686308|gb|EEL40221.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228708093|gb|EEL60264.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 231

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 102/227 (44%), Gaps = 36/227 (15%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP------- 64
           Y+A +G  G+ +  F ++                ++ FL  + E VL    LP       
Sbjct: 16  YVAKYGYQGIVISDFQNV----------------LDIFLEEQPELVLLDINLPSFDGYYW 59

Query: 65  -RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---- 119
            R IR  S  P++ IS        +   ++G DD + KP H+  ++A++ +  RR     
Sbjct: 60  CRQIRGVSTCPILFISAREGTMDQVMALENGGDDFIPKPFHYEVVMAKIRSHLRRAYGDY 119

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K+     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + +
Sbjct: 120 APKLEERMVEQQGLSLYPERLVLKLRNQEIDITRNEAILLEMLMKNYPRVVSREVLLNKL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDW 222
           +   +  V++N +  + +++RKKL+     D +++ R +GY   I W
Sbjct: 180 WD-SESYVDDNTLSVNTTRVRKKLKTLHIEDAIETIRSVGYRLHITW 225


>gi|229117941|ref|ZP_04247302.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228665512|gb|EEL20993.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 235

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 15/170 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
           R IR  S  P+I +S        +   ++G DD + KP H   ++A+V +  RR      
Sbjct: 65  RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124

Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + AE+  + V     F      E +G+   L + E  +LE LM    + V + ++  A  
Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWKGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182

Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI--DWN 223
            L+DE   V++N +  ++ ++RKKL  +LG  + + +KR  GY++  +W+
Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYALLTEWS 230


>gi|237729297|ref|ZP_04559778.1| DNA-binding response regulator CreB [Citrobacter sp. 30_2]
 gi|226909026|gb|EEH94944.1| DNA-binding response regulator CreB [Citrobacter sp. 30_2]
          Length = 229

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 98/226 (43%), Gaps = 16/226 (7%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE- 62
           L++D   + D  I +   +G S+E F     E       +      +A ++  G   +  
Sbjct: 8   LVEDEQGIADTLIYMLQQEGFSVEAF-----ERGFPVLEKSRQQCPDAIILDVGLPDISG 62

Query: 63  ---LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
                R++  H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+
Sbjct: 63  FELCRRLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFS 175
           +  +  +       F +  +   Q   F +P    R E  +L+ L+ + G+  ++ Q+  
Sbjct: 123 QKFSTPSSMTRCGDF-ELNELAAQITWFSIPLNLTRYEFLLLKTLLMSPGRIYSRQQLMD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 182 LVWADAQDTFDRT-VDTHIKTLRAKLRAINPELSPINTHRGMGYSL 226


>gi|260587419|ref|ZP_05853332.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331083699|ref|ZP_08332810.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542286|gb|EEX22855.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330403910|gb|EGG83462.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 234

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 11/160 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G    ++ R IR  S VP+I +S    +   +   + G DD + KP   +E++ARV
Sbjct: 56  LMLPGMDGYQVCREIRQKSNVPIIMLSAKGEIFDKVLGLELGADDYIIKPFDSKELVARV 115

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMAN 163
            A+ RR +  N    T P   + +  D  +          G+   +P +E  +L +L ++
Sbjct: 116 KAVLRRYQ-PNVAPATQPSGKYVEYPDLAINLTNYSVIYYGKQLDMPPKELELLYFLASS 174

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
             +   + Q+   I+G ++   +   V+ HI +LR+K+++
Sbjct: 175 PNQVFTREQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKD 213


>gi|221640766|ref|YP_002527028.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|221161547|gb|ACM02527.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
          Length = 228

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 7/153 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  SQVP+I +S        +   D+G  D V KP    E LAR+ A+ R   
Sbjct: 64  IEVLRTVRGWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRS 123

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +      + +    R   V G    L RRE  +L  L +  G+ V +  I   I+
Sbjct: 124 GPAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           G    A EE+    ++    ++LR KLG D  D
Sbjct: 184 G---PAHEED--SQYLRVYIRQLRAKLGDDAAD 211


>gi|169351650|ref|ZP_02868588.1| hypothetical protein CLOSPI_02431 [Clostridium spiroforme DSM 1552]
 gi|169291872|gb|EDS74005.1| hypothetical protein CLOSPI_02431 [Clostridium spiroforme DSM 1552]
          Length = 144

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 3/126 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD + KP +   +L  + AI++RL K+ NN    G     S     +   E+  L + 
Sbjct: 18  GADDYITKPYNPTILLLHIEAIFKRLNKIDNNLVYHGVNINLSKSILKKDNIELL-LSKN 76

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  I  +L  N+GK V++ +I + ++G  D+ +++N +  ++++L+KKL      + +++
Sbjct: 77  EMSIFYFLFMNQGKIVSRDEIMNYLWGT-DKFIDDNTLTVNMTRLKKKLVQIGLINVIET 135

Query: 213 KRFLGY 218
           +R  GY
Sbjct: 136 RRDQGY 141


>gi|153810970|ref|ZP_01963638.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
 gi|149832858|gb|EDM87941.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
          Length = 233

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 8/149 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I +S        +   + G DD + KP   +E++ARV A+ RR KV
Sbjct: 65  QVCREIRHTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124

Query: 122 ------SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  + P + +          G+   +P +E  +L +L A+  +   + Q+ 
Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGKQIDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
             I+G ++   +   V+ HI +LR+K+++
Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKD 212


>gi|120611299|ref|YP_970977.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120589763|gb|ABM33203.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 235

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 86/178 (48%), Gaps = 26/178 (14%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G+  L+L R  RA ++   +P++ ++        +   D+G DD + KP   +E+LAR+ 
Sbjct: 60  GQSGLQLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 114 AIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           A+ RR         + +S+   + G  RV         QG+   +   E ++L YLM + 
Sbjct: 120 AVLRRRAPEQATDTVAISDLILDAGTYRV-------TYQGQQIKIGPTEFKLLHYLMKHP 172

Query: 165 GKRVAKTQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  ++ Q+   ++G  +F   +EE  V+ H+ +LR+ L   +    V++ R  GY +
Sbjct: 173 ERVHSRAQLLDKVWGDHVF---IEERTVDVHVKRLREAL--GVAGAMVETVRGAGYRL 225


>gi|78188413|ref|YP_378751.1| two component transcriptional regulator [Chlorobium chlorochromatii
           CaD3]
 gi|78170612|gb|ABB27708.1| two component transcriptional regulator, winged helix family
           [Chlorobium chlorochromatii CaD3]
          Length = 253

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 85/167 (50%), Gaps = 10/167 (5%)

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IR    +  +P+I ++        +  F+ G+DD V KP   RE+  R+ AI +R
Sbjct: 81  ELCRHIRNTHLYRDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSFRELNLRIRAILKR 140

Query: 119 LKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  + +A+    TG + V        + G+   L   E ++L  L+  +G+  ++  + 
Sbjct: 141 ERRQSGKAQEVLGTGGLEVDLVRHCVTLDGQELVLTLMEFKLLVALLKRKGEAQSRETLL 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++ + D+++    +++HI+++R+KL N      + + R LGY ++
Sbjct: 201 SDVWDI-DKSISTRTIDTHITRIREKLGNYGAL--IKTVRGLGYRLE 244


>gi|77459846|ref|YP_349353.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77383849|gb|ABA75362.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 224

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 32/180 (17%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VLE  R  R HS   ++ ++    L   +   D G DD + KP    E+LARV  + 
Sbjct: 59  GWSVLEQLR--RTHSTRVMM-LTARGRLADKIRGLDLGADDYLVKPFEFPELLARVRTLM 115

Query: 117 RR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR         LKV++   + G  R F   +  ++  + F L       L  LM   G+ 
Sbjct: 116 RRSENIPVPQVLKVADLELDPGRHRAFRGTQRIDLTTKEFAL-------LHLLMRQSGEV 168

Query: 168 VAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
           + +TQI S ++ + FD   + NVVE  I +LR K+      DP DSK     R +GY ++
Sbjct: 169 LTRTQIISLVWDMNFD--CDTNVVEVSIRRLRAKID-----DPFDSKLIHTLRGVGYVLE 221


>gi|333025275|ref|ZP_08453339.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332745127|gb|EGJ75568.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 265

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 18/173 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR  
Sbjct: 96  VSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFG 155

Query: 120 -------KVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                  +     A +GP+R     V ++G +    GE   L   E R+L    A  G  
Sbjct: 156 HAGGGARQAVEEEAASGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTV 215

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ ++   ++  +    +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 216 LSRDRLLERVWD-YGWGGDTRVVDVHV----QRLRAKIGQDRIETVRGFGYKL 263


>gi|331084296|ref|ZP_08333401.1| hypothetical protein HMPREF0992_02325 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401831|gb|EGG81408.1| hypothetical protein HMPREF0992_02325 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 233

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 1/141 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S VP++ ++   S    +  F  G DD V KP   +E+L R+ AI RR  +
Sbjct: 63  DLCKKIREFSDVPILFLTGCSSELELIRGFQVGGDDYVTKPFRMQELLVRMQAILRRSSL 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +           ++      ++G E  PL   E +I   L+ +    + +  +   ++  
Sbjct: 123 NKGEYYQSGELYYNHFTHQMIKGKEALPLTSVELKIAVLLLKSWPNTITRKDLLYHVWDN 182

Query: 181 FDEAVEENVVESHISKLRKKL 201
             + VEEN +  ++S+LR KL
Sbjct: 183 DFQFVEENTLNVNVSRLRDKL 203


>gi|327403396|ref|YP_004344234.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327318904|gb|AEA43396.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 230

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET-- 128
           +VP++ ++     +  L+ F+SG DD + KP    E+LAR+ AI RR   V N   E   
Sbjct: 76  KVPILFLTAKAMKEDKLEGFESGADDYMTKPFTMEELLARIEAILRRTGPVDNEEGEMQQ 135

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G I+     R   ++ E   L  +E ++L  L  NR + + +     AI+G  D     
Sbjct: 136 IGRIQYEPISRILHLKEENKKLTTKEGQLLHLLCKNRNEVLDRQAALRAIWG-DDNYFNG 194

Query: 188 NVVESHISKLRKKLR 202
             ++ +I+KLRK L+
Sbjct: 195 RSMDVYIAKLRKLLK 209


>gi|311278928|ref|YP_003941159.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308748123|gb|ADO47875.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 240

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 6/153 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR +    +    AE+ P+ V         + ++  L   E R+L+ L    GK  
Sbjct: 122 KTILRRCRPHRELQAMDAES-PLIVDESRFQASWRNKLLDLTPAEFRLLKTLSQEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|210610535|ref|ZP_03288461.1| hypothetical protein CLONEX_00651 [Clostridium nexile DSM 1787]
 gi|210152394|gb|EEA83400.1| hypothetical protein CLONEX_00651 [Clostridium nexile DSM 1787]
          Length = 223

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 13/171 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS---GVDDVVNKPIHHREILARVA 113
           GE    L   IR  S+VP+I ++   S  T +D  +S   G D  + KP +   +LA++A
Sbjct: 59  GENGFALCSKIRTFSEVPIIFVT---SCNTDMDELNSIMLGGDAFITKPYNTAILLAKIA 115

Query: 114 AIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++ ++   +  + +   G   +  +       G+   L + E +IL YL  N GK  ++ 
Sbjct: 116 SLLKKAYPAQQQEQIVYGDAVLHLESSSLGYNGQSIELTKNELKILYYLFKNGGKICSRG 175

Query: 172 QIFSAIYGLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I      L+D    V++N +  +I+++R+KL      D + +K   GY+I
Sbjct: 176 DIIEY---LWDNQLYVDDNALSVNINRIREKLVGIGLTDFIKTKHRQGYTI 223


>gi|152981368|ref|YP_001353509.1| two component system transcriptional regulatory protein for
           high-affinity potassium transport system
           [Janthinobacterium sp. Marseille]
 gi|151281445|gb|ABR89855.1| two component system transcriptional regulatory protein for
           high-affinity potassium transport system
           [Janthinobacterium sp. Marseille]
          Length = 232

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S VP+I +S   S    +   D+G DD + KP    E+LARV +  RR +  +  A
Sbjct: 71  IRAWSPVPIIVLSARVSEGDKIKALDAGADDYLIKPFGVGELLARVRSTIRRHRRVDGDA 130

Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +     G ++V  + R      ++  L   E R+L  L+AN G+ V   Q+   ++G   
Sbjct: 131 QGSFSFGDVKVDLNARLVTKANQMVHLTPTEYRLLSVLVANAGRVVTNPQLLREVWG-PS 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            +   + +  ++  LR+KL +    DP   +  L
Sbjct: 190 HSESGHYLRIYMGHLRQKLED----DPAQPRYLL 219


>gi|149279260|ref|ZP_01885392.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149230022|gb|EDM35409.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 249

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 13/190 (6%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVD 96
           LQ+    D   +   ++  G   +E+ R +R    ++P++ ++   S+   +    SG D
Sbjct: 61  LQTFLDNDFQLLILDVMMPGMSGVEICRSLRQQQREMPILMLTALGSIDDKVTGLSSGAD 120

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPR 151
           D + KP H +E+LAR+ A+ RR K      E   +R   +  D    EV   G+   L  
Sbjct: 121 DYLLKPFHFKELLARIEALLRRHKKEAVVQEDHLLRFDDISLDTYSKEVSRAGQPISLTA 180

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD-- 208
           +E  +LE  + N  + +++  I   ++ + FD     NV++ +++ LR K+    GFD  
Sbjct: 181 KEYLLLELFLRNPNRLLSRQYIAERVWDVNFDTGT--NVIDVYMNFLRNKIEK--GFDRK 236

Query: 209 PVDSKRFLGY 218
            + +K  +GY
Sbjct: 237 LIHTKIGMGY 246


>gi|148240584|ref|YP_001225971.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849123|emb|CAK24674.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 248

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 26/165 (15%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR        
Sbjct: 74  LRKESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEKEHAAG 133

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 +KVS+ + +T   +VF       + G  F L       LE L++  G+  ++ +
Sbjct: 134 IPNTGLIKVSDLKIDTNKRQVFRADERIRLTGMEFSL-------LELLVSRSGEPFSRGE 186

Query: 173 IFSAIYGLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           I   ++G   E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 187 ILKEVWGYTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 227


>gi|108759259|ref|YP_632949.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
 gi|108463139|gb|ABF88324.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
          Length = 229

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVF 147
           F+ G DD V KP   RE++ R+ AI RR   +         GP+R+        V+    
Sbjct: 94  FEVGADDYVVKPFSVRELVLRLKAILRRGAPTAGGTAPLALGPLRLDVASHRFFVEDREV 153

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L   E R+LE+L+A  G+   + Q+   ++GL   ++E   +++H+ +LR KL      
Sbjct: 154 ALTALEFRLLEHLLARLGRVQTREQLLEEVWGL-SSSLETRTIDTHVMRLRDKLGPARAL 212

Query: 208 DPVDSKRFLGYSI 220
             +++ R +GY +
Sbjct: 213 --LETVRGVGYRM 223


>gi|33598499|ref|NP_886142.1| phosphate regulon transcriptional regulatory protein [Bordetella
           parapertussis 12822]
 gi|33574628|emb|CAE39279.1| phosphate regulon transcriptional regulatory protein [Bordetella
           parapertussis]
          Length = 213

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 57  GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L L R +R   +   VP+I ++   + Q  +D  ++G DD + KP   +E++AR+ 
Sbjct: 39  GASGLSLARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIK 98

Query: 114 AIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR   +++++  +   +++           +   +   E R+L + M +  +  +++
Sbjct: 99  AVLRRRAPQLTDDIIDVAGLKLDPVTHRLSGHSQSLSIGPTEFRLLHFFMTHPERVFSRS 158

Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           Q+   ++G  D   VEE  V+ HI +LRK L        V++ R  GY
Sbjct: 159 QLLDQVWG--DHVFVEERTVDVHIRRLRKALEPSGHDAHVETVRGNGY 204


>gi|121602059|ref|YP_988753.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
 gi|120614236|gb|ABM44837.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
          Length = 228

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 19/160 (11%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           ++ P++ +S    +   +    +G DD + KP    E+LARV  + RR   +   AET  
Sbjct: 71  NETPVLILSALGQVDDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRR--KNPKEAET-- 126

Query: 131 IRVFSDGRDPEV--------QGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
             V+  G D E+        +GE+   L  RE R+LEYLM + G+ V +T +   ++   
Sbjct: 127 --VYCVG-DLELDRLSHTVKRGEMNITLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYH 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + NV++ HIS+LR K+        + + R  GY +
Sbjct: 184 FDP--QTNVIDVHISRLRAKIEKDFDIPLLHTVRGAGYML 221


>gi|254229759|ref|ZP_04923167.1| transcriptional activator protein CopR [Vibrio sp. Ex25]
 gi|151937726|gb|EDN56576.1| transcriptional activator protein CopR [Vibrio sp. Ex25]
          Length = 232

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 20/221 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + L++ GY+     DGV  +G      EE+       D+  ++  L    G +VL   R 
Sbjct: 20  KGLIESGYVVDLVHDGV--DGLYHATSEEY-------DLILLDIMLPKLDGWQVLNTLRS 70

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
              H+  P+I ++    ++  +  F+ G +D V KP    E+LAR+  ++R    +   A
Sbjct: 71  SGIHT--PVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHISAQVVA 128

Query: 127 ETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
               +RV     D         G+   L  +E  +LE LM   G+ +++T I S ++ + 
Sbjct: 129 SPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIASLVWDMN 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + NV++  + +LR K+        + + R +GY ++
Sbjct: 189 FDS--DTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLE 227


>gi|297379391|gb|ADI34278.1| response regulator (ompR) [Helicobacter pylori v225d]
          Length = 220

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R I     +P+I  S    ++  +   D G DD + KP   +E+LAR+ ++ RR  
Sbjct: 56  LEVCRRISKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSH 115

Query: 121 VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +E G   +F    D R+  +  +   L R E  IL  L++ +G   ++  I    
Sbjct: 116 KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI---- 171

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDW 222
             +  E++        I  +  +LR+K+  +P     + S R +GY +++
Sbjct: 172 -AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKLEY 220


>gi|326781352|ref|ZP_08240617.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326661685|gb|EGE46531.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 224

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 8/180 (4%)

Query: 28  GFNSLEFEEWLQSSAREDVSAIEAF----LIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           GF      +W ++     +SA +      ++  G+ +  L    RA   VP++ ++   S
Sbjct: 24  GFAVDCASDWPEADVLLHLSAYDCVVLDRMVPSGDTLAPLEGRRRAGWSVPVLCLTALDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ 143
           L   L   +SG DD + KP   RE++ RV  + RR   +   +  G   V  D    EV+
Sbjct: 84  LDERLRGLESGADDYLAKPFSMRELVLRVRGLSRR-AAARLPSFLGCADVVMDVARHEVR 142

Query: 144 --GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             G +  L  +E  +L+ L+ +R   V +T +    +    + V  NVV++ ++ LR+KL
Sbjct: 143 RGGVLLSLSPKEYAVLQQLLVHRDTVVTRTGLLEHCWDEMADPV-SNVVDAVVAGLRRKL 201


>gi|294637461|ref|ZP_06715749.1| KDP operon transcriptional regulatory protein KdpE [Edwardsiella
           tarda ATCC 23685]
 gi|291089356|gb|EFE21917.1| KDP operon transcriptional regulatory protein KdpE [Edwardsiella
           tarda ATCC 23685]
          Length = 229

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 18/164 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R +R  S +PLI +S        +   D+G +D ++KP    E+LARV    RR  
Sbjct: 65  IEFIRDLRRWSAIPLIVLSARSDEADKIAALDAGAEDFLSKPFGIGELLARVRVALRR-- 122

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               + +  P+  F +       R     GE   L   E R+L  L+AN GK + + Q+ 
Sbjct: 123 -HTRQQQESPLVCFGEVQVDLLQRSVTRAGESLHLTPIEFRLLAELIANSGKVLTQRQLL 181

Query: 175 SAIYGLFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216
           ++++G        N VE SH  ++    LR KL  +P   +  L
Sbjct: 182 NSVWG-------PNYVEHSHYLRIYMGHLRQKLELEPARPRHLL 218


>gi|237666049|ref|ZP_04526037.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237658996|gb|EEP56548.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 234

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 19/174 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL + IR  S +P++  S    +   +     G DD + KP    E++AR+ +  RR   
Sbjct: 63  ELTKNIREISNIPILIFSAKYEISDKILALSIGADDYLTKPFEPMEVIARINSNLRRCYE 122

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +  N + + G + +  D    E  G    +   E +IL  LM   G+  +K Q
Sbjct: 123 LDDRFKNQDKNFKLQVGELNLDLDNFTIEKNGLPINVTATEYKILAKLMKYPGRVYSKAQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221
           ++ +I G + ++ +++ +  HIS LR+K+      DP + K     R +GY I+
Sbjct: 183 LYESINGEYCDS-DDSTMMVHISNLREKIEE----DPKNPKYIKTVRGIGYKIE 231


>gi|229042513|ref|ZP_04190258.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228726866|gb|EEL78078.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 242

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD + KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVLRRTNE 138

Query: 122 SNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  G   V+ + +    V  E   L   E  +L   + +    + + Q+   I+GL
Sbjct: 139 HKQIQYHGI--VWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL 196

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
            +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 197 -NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 237


>gi|218236076|ref|YP_002365447.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218164033|gb|ACK64025.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNLPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N   +     +  D       V  E   L   E  +L   + +    + + Q+   I+G
Sbjct: 119 TNEHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L +   E+  V+SHI  LR KLR K  F P+D      Y I
Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGI 216


>gi|161525185|ref|YP_001580197.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350076|ref|YP_001945704.1| OmpR family two-component system phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|160342614|gb|ABX15700.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189334098|dbj|BAG43168.1| OmpR family two-component system phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 233

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 76  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R +    RV +     E++ ++ P    E R+L + M +  +  ++TQ+   ++G  D
Sbjct: 136 GLRLDPATHRVAAQTNGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 190

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 191 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|163791203|ref|ZP_02185620.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873534|gb|EDP67621.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 229

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 8/167 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R   Q+P++ +S   +    +    +G DD V KP +  E++AR+ ++ RR  
Sbjct: 61  IQVVKEVRKELQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRSN 120

Query: 121 VSN-----NRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +      N+ E GP+ +  +  +   + GE   L   E  IL  L +N  +  +  +IF
Sbjct: 121 YATNLQELNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASNPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSI 220
             ++   +  V    V  H+S LR K+    G + V    + +GY I
Sbjct: 181 ERVWQQ-ESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226


>gi|49475898|ref|YP_033939.1| transcriptional regulator ompr [Bartonella henselae str. Houston-1]
 gi|49238706|emb|CAF27958.1| Transcriptional regulator ompr [Bartonella henselae str. Houston-1]
          Length = 234

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE  ++L   +R    VP++ ++    +   ++  ++G DD + KP   RE+L R+ AI 
Sbjct: 68  GENGIDLTHSLRQTKDVPILMLTALSEIDNRINGLEAGADDYLAKPFDPRELLLRIHAIL 127

Query: 117 RR-LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR   ++ ++ E    GP       R+ +  GEV  L  +E++++     N G  + + +
Sbjct: 128 RRGFALNQSKIEQIVFGPYIFSISRRELKKGGEVIKLTDKEQKMMVIFAENPGDIIPRHK 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSI 220
                +   D  + E  ++  I++LR+K+       P+   + R +GY +
Sbjct: 188 -----FATEDSNIGERAIDVQINRLRRKIEKNPSL-PIWLQTVRGIGYKL 231


>gi|302871747|ref|YP_003840383.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574606|gb|ADL42397.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 223

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 76/145 (52%), Gaps = 4/145 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R  S +P+I ++        +   + G DD + KP   +E++AR+ A+ RR + 
Sbjct: 61  EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 121 -VSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V++ +    P + V     + +++ +V  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
           G ++   +   V+ HI ++R+K+ N
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEN 204


>gi|257888948|ref|ZP_05668601.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257893831|ref|ZP_05673484.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|293378616|ref|ZP_06624776.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|257825004|gb|EEV51934.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257830210|gb|EEV56817.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|292642747|gb|EFF60897.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 222

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F  G DD + KPI   E++ RV A+ RR K++ ++    G  ++  D            L
Sbjct: 92  FKLGADDYMTKPIDVNEMILRVEALLRRSKINYSSSLMIGQTKLELDTYTVLQDQHSLIL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P++E  +L  L++   K   + Q+   I+GL D   EE  ++ HI +LR +      F  
Sbjct: 152 PQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL-DTNTEERTIDVHIKRLRTRFEQTEDFQ- 209

Query: 210 VDSKRFLGY 218
           + + R LGY
Sbjct: 210 IMTVRGLGY 218


>gi|326203672|ref|ZP_08193535.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986112|gb|EGD46945.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 258

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 16/170 (9%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IRA S++P+I ++        +   D G DD + KPI  +E+++R+ A+ RR   
Sbjct: 89  EFCKEIRAVSKMPIIFLTSCNDEANVVMGLDLGADDYIPKPIRIKELISRINAVLRR--- 145

Query: 122 SNNRAETGPIRVFSDGRDPEV---QGEVFP------LPRRERRILEYLMANRGKRVAKTQ 172
             N AE     +     D E+   QG+V        L   E ++L  L+ +  + +++  
Sbjct: 146 --NSAEANIASIIK-SNDIEINVMQGKVMKRGQEVMLTAVEYKLLLTLIEHSEQILSRNT 202

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           I   ++ +  E +++N +  +I +LR+K+ +     PV+     G    W
Sbjct: 203 ILEHLWDIDGEFIDDNTLSVYIRRLREKIEDN-ASSPVNILTVRGVGYKW 251


>gi|326201094|ref|ZP_08190966.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988662|gb|EGD49486.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 223

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 67  IRAHSQVPLI---GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--- 120
           IR  S VP+I    + D P++   LD    G DD ++KP+   E+++R+ AI RR K   
Sbjct: 65  IRQTSNVPIIFMTALDDEPNVVFGLDI---GGDDYISKPVRTSELISRINAIMRRQKQIE 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V   +  +G + V        V  +   L   E ++L  L+ N+G  +++  I   ++ 
Sbjct: 122 GVDTGKITSGNVVVEPLKCKVYVNLQEVFLTAVEYKLLLVLLENKGIVISRNTIIEKLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +    V+ N +  ++ +LR+K+  +     +++ R LGY
Sbjct: 182 IDSNFVDYNTLNVYMKRLREKIETE-DEKHIETVRGLGY 219


>gi|229139241|ref|ZP_04267816.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|228644300|gb|EEL00557.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 231

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 61  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 121 PKVEERMVEQQGLCLYPERLVLKLKKQEIDITRNEAILLEMLMKNYPRVVSREVLLNKLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     + +++ R +GY   I W+
Sbjct: 181 D-SESYVDDNTLSVNTTRVRKKLKTLHIENAIETIRSVGYRLHITWD 226


>gi|226309996|ref|YP_002769890.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092944|dbj|BAH41386.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 7/134 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV-----SNNRAETGPIRVFSDGRDPEVQGEVFP 148
           G DD V+KP    E+LARV A++RRL         N     P R+  D R      +   
Sbjct: 95  GADDYVSKPFSPAELLARVKALHRRLTPIPEAEDKNEINIAPFRLLLDERKLIRTEQEID 154

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
           L  +E  I++ L  N  K +++ +I +A++G F    +  +V+ +I ++R+K+ +     
Sbjct: 155 LTPKEFAIIKLLAENANKAISRDEILTAVWGQFFVG-DLKIVDVNIRRIRQKIEDDPAH- 212

Query: 209 PVDSKRFLGYSIDW 222
           P   +   GY   W
Sbjct: 213 PAFLETVWGYGYLW 226


>gi|224823772|ref|ZP_03696881.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224604227|gb|EEG10401.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 228

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 19/170 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R HSQVP++ ++        +   + G DD V KP   R ++AR+ A+ RR  
Sbjct: 61  IEVLRRLRQHSQVPVLMLTARGDDIDCIMGLELGADDYVTKPCAMRTLVARLKALLRR-- 118

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK--- 170
             +  A T       GP+ ++   R  E  G    +   E  +LE L+ + G+ V+K   
Sbjct: 119 APSTAAPTVCGPLAAGPLTLWPTRRHAECDGRALEMTGTEFNLLEVLVRHAGRIVSKHEL 178

Query: 171 -TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             Q        FD +     ++ H+  +R+KL  +      + + R +GY
Sbjct: 179 SQQALRRPLARFDRS-----IDVHVCSIRQKLPPRPDSLSWIQTVRGMGY 223


>gi|206603627|gb|EDZ40107.1| Putative two component transcriptional regulator, winged helix
           family [Leptospirillum sp. Group II '5-way CG']
          Length = 259

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R IR+     +VP++ +S        +   + G DD + KP   RE++ARV A+ R
Sbjct: 71  VEVVRFIRSQKNIGKVPILALSAVSDADWKIRTIEEGADDFLAKPFSTRELVARVHALAR 130

Query: 118 RLK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R++       +   R + G + V +   +  + G    L   E RIL YL+++    + +
Sbjct: 131 RVEKERDSGPMPKARYDLGELVVDTYRYETRIDGREIRLTPIEFRILVYLVSHENVVIRR 190

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            ++   ++G   E V+E+ +  H+  LR+KL  K      DS RF+
Sbjct: 191 EELMKVLWGESWE-VDEHNLNVHMWALRRKLGEK-----SDSPRFI 230


>gi|207727997|ref|YP_002256391.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|207742399|ref|YP_002258791.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|206591241|emb|CAQ56853.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206593789|emb|CAQ60716.1| response regulator protein [Ralstonia solanacearum IPO1609]
          Length = 246

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 13/137 (9%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            G DD + KP H  E+ ARV A+ RR   +  +      GP       R   + GE   L
Sbjct: 94  QGADDYIAKPFHIPELRARVEALLRRAYPVPYAGVPFAVGPYHFNPQRRQVTLHGEHLAL 153

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
              E ++   L AN G+ +++  IF  ++G  + A     ++SH+S++R KL      +P
Sbjct: 154 TDIEFQLAMLLFANVGRTLSRDHIFGQVWGR-NSAEYTRTIDSHVSRIRLKLH----VEP 208

Query: 210 VDSKRFL-----GYSID 221
           V+  R       GY +D
Sbjct: 209 VNEVRLAAVYKHGYRLD 225


>gi|218234694|ref|YP_002369334.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228923280|ref|ZP_04086569.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228954807|ref|ZP_04116827.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229072041|ref|ZP_04205250.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           F65185]
 gi|229180856|ref|ZP_04308192.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           172560W]
 gi|229192737|ref|ZP_04319696.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 10876]
 gi|218162651|gb|ACK62643.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228590827|gb|EEK48687.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 10876]
 gi|228602619|gb|EEK60104.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           172560W]
 gi|228710975|gb|EEL62941.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           F65185]
 gi|228804796|gb|EEM51395.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228836374|gb|EEM81726.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 230

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP     E  G+   L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATETIEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|217960049|ref|YP_002338607.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|217064648|gb|ACJ78898.1| DNA-binding response regulator [Bacillus cereus AH187]
          Length = 235

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IR  S  P++ IS        +   ++G DD ++KP H+  ++A++ +  RR      
Sbjct: 65  RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 125 PKVEERMVEQQGLCLYPERLVLKLKKQEIDITRNEAILLEMLMKNYPRVVSREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
              +  V++N +  + +++RKKL+     + +++ R +GY   I W+
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLHIENAIETIRSVGYRLHITWD 230


>gi|154502895|ref|ZP_02039955.1| hypothetical protein RUMGNA_00715 [Ruminococcus gnavus ATCC 29149]
 gi|153796434|gb|EDN78854.1| hypothetical protein RUMGNA_00715 [Ruminococcus gnavus ATCC 29149]
          Length = 222

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 13/171 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS---GVDDVVNKPIHHREILARVA 113
           G     L   +R  S+VP+I ++   S  T +D  +S   G D  + KP +   +LA++A
Sbjct: 58  GTSGFSLCTEVRTFSEVPIIFVT---SCNTDMDELNSIMLGGDAFITKPYNTAILLAKIA 114

Query: 114 AIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++ ++   +  R +   G   +  +    +  G+   L + E +IL YL  N GK  ++ 
Sbjct: 115 SLLKKAYPAQQREQIVYGDTVLHLESSSLDYHGQSVELTKNELKILYYLFKNGGKICSRG 174

Query: 172 QIFSAIYGLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I      L+D    V++N +  +I+++R+KL +    D + +K   GY+I
Sbjct: 175 DIVEY---LWDNQLYVDDNALSVNINRIREKLASIGLTDFIKTKHRQGYTI 222


>gi|189423131|ref|YP_001950308.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189419390|gb|ACD93788.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 235

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 9/162 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S VP++ ++        +   + G DD + KP + RE++AR+ AI RR   +  
Sbjct: 66  RRIRGESSVPVVMLTARGEEVDRIVGLEMGADDYLPKPFNPRELVARIRAIQRRQSTAQK 125

Query: 125 RAETG-PIRVFSD-----GRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  + V  D     GR   +QGE    L   E  +LE L+A  G+ +++  I S  
Sbjct: 126 DGTAAEAVLVVGDLVLDPGRRTVLQGERSVVLTSIEFSVLELLLAQAGRVISRDDICSQA 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            G    + + + ++ H+S LR+KL     G + + S R +GY
Sbjct: 186 LGRQLNSFDRS-IDVHVSSLRRKLGPAGDGSERIKSVRGIGY 226


>gi|146293077|ref|YP_001183501.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145564767|gb|ABP75702.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 222

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 5/144 (3%)

Query: 61  LELP--RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L LP  + +RA +Q +P++ ++ +  L+T +D  D+G DD V KP   REI AR+  ++R
Sbjct: 58  LALPVIKTLRASNQALPILVLTAWDHLETKIDVLDAGADDYVLKPCDVREIEARLRVVHR 117

Query: 118 RLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R +   ++   +  + +         + +   L  RE  +L+ LM + GK ++K Q    
Sbjct: 118 RHQQRQHDLLISNELTLDIQSHKCCFRNKGVHLTTREFLLLKELMLHPGKILSK-QHLEE 176

Query: 177 IYGLFDEAVEENVVESHISKLRKK 200
           I   ++   E N +E HI  +RKK
Sbjct: 177 INTGWNGDNEGNSLEVHIHNIRKK 200


>gi|77409171|ref|ZP_00785883.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77172217|gb|EAO75374.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 228

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 6/116 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGE-VFP 148
            D+G DD + KP   +E+LAR+ ++ RRL+  + N    G  RV     + E+Q E    
Sbjct: 91  LDAGADDYLTKPFSLKELLARLRSMSRRLEDFTPNVLSLG--RVTLSVGEQELQCENTIR 148

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL--FDEAVEENVVESHISKLRKKLR 202
           L  +E ++L + M N  K ++  Q+F  ++G     E V+E  +  ++S LR+KL+
Sbjct: 149 LAGKEAKMLAFFMLNHDKELSTQQLFEHVWGADKDQEDVDEGYIFIYVSYLRQKLQ 204


>gi|317012011|gb|ADU82619.1| Transcriptional regulator [Helicobacter pylori Lithuania75]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R I     +P+I  S    ++  +   D G DD + KP   +E+LAR+ ++ RR  
Sbjct: 61  LEVCRRISKQKHIPIIISSARSDVEYKIKALDYGADDYLPKPYDPKELLARIQSLLRRSH 120

Query: 121 VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +E G   +F    D R+  +  +   L R E  IL  L++ +G   ++  I    
Sbjct: 121 KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI---- 176

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDW 222
             +  E++        I  +  +LR+K+  +P     + S R +GY +++
Sbjct: 177 -AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKLEY 225


>gi|229032736|ref|ZP_04188696.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228728563|gb|EEL79579.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 5/145 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKTTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRTNY 121

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  N       + +F D     V+   E   L +RE  +L +L+ N+   +++  + + +
Sbjct: 122 IQQNETNFFQFKDLFVDTSSNIVKKGSENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G ++  V  NVV+ +I  +RKKL+
Sbjct: 182 WG-YNVVVNPNVVDLYIGYVRKKLK 205


>gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304749|gb|EFQ80820.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 234

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET--GPIRVFSDGRDPEVQGEVFP 148
           G DD V KP    E++ R+  I RR    + S N A      + +  D  +    GE+  
Sbjct: 100 GADDYVTKPFSLEEVITRLRVIMRRGGAAEESTNDATMSYADLTLNDDTHEVTKAGELIE 159

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L   E  +L YLM N+   ++K++I   ++  +D   + NVVES+IS LR+K+
Sbjct: 160 LSPTEFNLLRYLMQNKEVVLSKSKILDNVWH-YDFGGDGNVVESYISYLRRKI 211


>gi|261368233|ref|ZP_05981116.1| KDP operon transcriptional regulatory protein KdpE [Subdoligranulum
           variabile DSM 15176]
 gi|282569742|gb|EFB75277.1| KDP operon transcriptional regulatory protein KdpE [Subdoligranulum
           variabile DSM 15176]
          Length = 230

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 19/157 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R+ S +P+I IS        ++  DSG DD + KP    E+LAR+    RRL 
Sbjct: 63  VEVIRRVRSWSDMPIIVISARSEDADKIEALDSGADDYLTKPFSVEELLARLRVTQRRLA 122

Query: 121 VSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N     G   VF++G+           + G+   L   E ++L  +  N GK +  T 
Sbjct: 123 AMN----AGGSPVFTNGQLTIDFAAGCAYLAGQELHLTPIEYKLLCLMARNCGKVLTHTY 178

Query: 173 IFSAIYGLFDEAVEENVVES---HISKLRKKLRNKLG 206
           I   ++G       EN V S    ++ LRKKL +  G
Sbjct: 179 ITQKVWG----TSWENDVASLRVFMATLRKKLESAPG 211


>gi|224477938|ref|YP_002635544.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422545|emb|CAL29359.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 233

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 18/175 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-I 115
           G   +E+ R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A +
Sbjct: 58  GRDGMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 116 YRRLKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            RR       A+  P       I ++ D    + +G+   L  RE  +  YL  + G+ +
Sbjct: 118 RRRYTQPAQEADNAPNEITIKDIVIYPDAYSIKKRGKDIELTHREFELFHYLANHMGQVM 177

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            +  +   ++G +D   +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 178 TREHLLQTVWG-YDYFGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227


>gi|220911579|ref|YP_002486888.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858457|gb|ACL38799.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 246

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           R DV  ++  L G  + V  L RI     +VP + ++   ++Q  +    +G DD V KP
Sbjct: 65  RPDVLVLDVMLPGF-DGVELLGRIRAFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKP 123

Query: 103 IHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
               E++ R+  + +R  V+  + AE   G + +  D R+    G+   L   +  +L Y
Sbjct: 124 FSMEEVILRLHRLVQRSGVAAMDTAELVVGDLVLNVDTREVTRAGDDVQLTATQFELLRY 183

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           LM N  + ++K QI   ++  +D   + N+VE +IS LRKK+
Sbjct: 184 LMENPKRVISKAQILDRVWD-YDFGGQANIVELYISYLRKKI 224


>gi|163791579|ref|ZP_02185981.1| hypothetical protein CAT7_04022 [Carnobacterium sp. AT7]
 gi|159873157|gb|EDP67259.1| hypothetical protein CAT7_04022 [Carnobacterium sp. AT7]
          Length = 232

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 20/165 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  SQVP+I IS        +     G DD ++KP      LA++ A+ RR        
Sbjct: 66  LRKISQVPIIFISSQNERMDIVMAIQMGADDFISKPFDLTVALAKIQALLRRTYDFTGND 125

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L   N   +T  +++     D EV+     L + E +ILE L   +G  V++  I   
Sbjct: 126 AYLSYQNVYLKTSELKIHY--LDQEVE-----LTKNEMKILEVLFTQKGAFVSREAIMMK 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           ++   D  +++N +  +I++LRKKL  +LG    + +K+  GY +
Sbjct: 179 LWE-NDSFIDDNTLAVNINRLRKKL-TELGLTSFIVTKKGYGYGL 221


>gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 228

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%)

Query: 65  RIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS 122
           R +RA H   P+I ++        L   +SG DD V KP   RE++ARV A+  R +   
Sbjct: 65  REMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLNRTMPRP 124

Query: 123 NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              A+T   G + + +      V GE   L  +E  +L +L +N+G  +++ +I   ++ 
Sbjct: 125 TEAADTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQKVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +D   E+  V++H+  LR  L
Sbjct: 185 -YDYFGEDRTVDTHVKMLRGHL 205


>gi|77459994|ref|YP_349501.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383997|gb|ABA75510.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 222

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 7/148 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P++ ++   S    ++   +G DD + KP H  E+  R+ ++ RR K   N+       
Sbjct: 73  IPVLILTARDSWAERIEGLKAGADDYLTKPFHPEELYLRIQSLLRRSKGQANQPTLKAAG 132

Query: 133 VFSD-GRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +  D GR   V+ G    L   E R+L Y M +  + ++K+ +   +Y    E  + NV+
Sbjct: 133 LHLDEGRQCVVRDGADIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLYDGETER-DSNVL 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E H++ LR+    KLG   ++++R  GY
Sbjct: 192 EVHVNHLRR----KLGKSVIETRRGQGY 215


>gi|22125379|ref|NP_668802.1| two-component transcriptional regulator [Yersinia pestis KIM 10]
 gi|45442400|ref|NP_993939.1| putative two-component system response regulator [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597038|ref|YP_071229.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808182|ref|YP_652098.1| putative two-component system response regulator [Yersinia pestis
           Antiqua]
 gi|108811547|ref|YP_647314.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|145599382|ref|YP_001163458.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149365137|ref|ZP_01887172.1| putative two-component system response regulator [Yersinia pestis
           CA88-4125]
 gi|162419859|ref|YP_001607146.1| transcriptional regulatory protein CpxR [Yersinia pestis Angola]
 gi|165926850|ref|ZP_02222682.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936048|ref|ZP_02224618.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011209|ref|ZP_02232107.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212464|ref|ZP_02238499.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398895|ref|ZP_02304419.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422720|ref|ZP_02314473.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424434|ref|ZP_02316187.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170023666|ref|YP_001720171.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186896121|ref|YP_001873233.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930047|ref|YP_002347922.1| putative two-component system response regulator [Yersinia pestis
           CO92]
 gi|229838590|ref|ZP_04458749.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895658|ref|ZP_04510829.1| putative two-component system response regulator [Yersinia pestis
           Pestoides A]
 gi|229899156|ref|ZP_04514299.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901816|ref|ZP_04516938.1| putative two-component system response regulator [Yersinia pestis
           Nepal516]
 gi|270490006|ref|ZP_06207080.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504751|ref|YP_003568813.1| putative two-component system response regulator [Yersinia pestis
           Z176003]
 gi|21958263|gb|AAM85053.1|AE013751_5 transcriptional regulator in 2-component system [Yersinia pestis
           KIM 10]
 gi|45437265|gb|AAS62816.1| putative two-component system response regulator [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51590320|emb|CAH21957.1| putative two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775195|gb|ABG17714.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108780095|gb|ABG14153.1| putative two-component system response regulator [Yersinia pestis
           Antiqua]
 gi|115348658|emb|CAL21602.1| putative two-component system response regulator [Yersinia pestis
           CO92]
 gi|145211078|gb|ABP40485.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149291550|gb|EDM41624.1| putative two-component system response regulator [Yersinia pestis
           CA88-4125]
 gi|162352674|gb|ABX86622.1| transcriptional regulatory protein CpxR [Yersinia pestis Angola]
 gi|165916193|gb|EDR34800.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921201|gb|EDR38425.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989887|gb|EDR42188.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206395|gb|EDR50875.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958427|gb|EDR55448.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051399|gb|EDR62807.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056316|gb|EDR66085.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750200|gb|ACA67718.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186699147|gb|ACC89776.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681745|gb|EEO77839.1| putative two-component system response regulator [Yersinia pestis
           Nepal516]
 gi|229687558|gb|EEO79631.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694956|gb|EEO85003.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701464|gb|EEO89492.1| putative two-component system response regulator [Yersinia pestis
           Pestoides A]
 gi|262362813|gb|ACY59534.1| putative two-component system response regulator [Yersinia pestis
           D106004]
 gi|262366737|gb|ACY63294.1| putative two-component system response regulator [Yersinia pestis
           D182038]
 gi|270338510|gb|EFA49287.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355210|gb|ADE65551.1| putative two-component system response regulator [Yersinia pestis
           Z176003]
 gi|320014446|gb|ADV98017.1| putative two-component system response regulator [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 227

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 15/167 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           R +R  S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR +    
Sbjct: 64  RQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFEEQPT 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + +     G + +    R  E QG+ F L   E  +LE L+ +  + V K ++    
Sbjct: 124 LSSIDSGIITQGGLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDELSDKG 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR----NKLGFDPVDSKRFLGYSI 220
            G   EA + + V+ HIS +R+KL     N L  + V   R +GY I
Sbjct: 184 LGRPREAYDRS-VDVHISNIRQKLAALPGNHLNIETV---RSIGYRI 226


>gi|323138724|ref|ZP_08073790.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322396079|gb|EFX98614.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 226

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 13/204 (6%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           G  ++  +S+E  E   S     V+ ++  L   G+ +  +P+I R      ++ ++   
Sbjct: 24  GFIVDRVDSIEKAELALSDYTYSVTLLDRRL-PDGDGLSLVPKIRRRQPDSRVLMLTALD 82

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD--- 139
           ++   ++  D+G DD + KP +  E++AR+ A  RR    +    + P+ + S   D   
Sbjct: 83  AIDQRIEGLDAGADDYLTKPFNLHELMARIRANLRR----HEGDPSPPVEIASLSFDFNT 138

Query: 140 --PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
               V G+   L RRE  +L  LM   G+ V +  + + IY + DE ++ + +   +S+L
Sbjct: 139 HVVTVAGQPVMLHRRELSLLAALMRRAGRVVKRQTLMAEIYSI-DEEIQPHALTILVSRL 197

Query: 198 RKKLRN-KLGFDPVDSKRFLGYSI 220
           R  L   + G D + S R +GY I
Sbjct: 198 RTHLDEVEAGVD-IHSARGVGYVI 220


>gi|315586167|gb|ADU40548.1| DNA-binding response regulator [Helicobacter pylori 35A]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R I     +P+I  S    ++  +   D G DD + KP   +E+LAR+ ++ RR  
Sbjct: 61  LEVCRRISKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSH 120

Query: 121 VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +E G   +F    D R+  +  +   L R E  IL  L++ +G   ++  I    
Sbjct: 121 KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI---- 176

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDW 222
             +  E++        I  +  +LR+K+  +P     + S R +GY +++
Sbjct: 177 -AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKLEY 225


>gi|295115391|emb|CBL36238.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 234

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 26/206 (12%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            LV DGY     ++  + EG + L+         RE++  +   ++  G   LE+ R IR
Sbjct: 22  CLVSDGYRVFKAEN--AKEGLDILD---------RENIHLVLLDIMMPGMDGLEMCRKIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------- 118
             + +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR          
Sbjct: 71  ETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQLNPQSSA 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ + N      + +  D     V  E   L   E  IL  L +N G+  +  +IF  ++
Sbjct: 131 LQSAKNEISIRGLVINKDNHKVTVYDEEIKLTPIEFDILYLLASNPGRVFSTDEIFEKVW 190

Query: 179 GLFDEAVEE--NVVESHISKLRKKLR 202
              +E V E  N V  HI +LR K++
Sbjct: 191 ---NEKVYEANNTVMVHIRRLRGKMK 213


>gi|238917773|ref|YP_002931290.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238873133|gb|ACR72843.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 233

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 82/166 (49%), Gaps = 11/166 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR ++ VP+I +S        +   + G DD + KP   +E++ARV A+ RR  +
Sbjct: 65  QVCREIRKNNNVPIIMLSAKGETFDKVLGLELGADDYIIKPFETKEMVARVKAVLRRYHM 124

Query: 122 --------SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   SN +    P + +  D       G+   +P +E  +L +L +   +   + Q
Sbjct: 125 PQSIGVDSSNAKCVNYPDLSINLDNYSVNYMGKNVEMPPKELELLYFLASAPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   I+G ++   +   V+ HI ++R+K+++ + ++ +++   +GY
Sbjct: 185 LLDNIWG-YEYIGDTRTVDVHIKRIREKIKDHVHWN-IETVWGIGY 228


>gi|182437916|ref|YP_001825635.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778552|ref|ZP_08237817.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178466432|dbj|BAG20952.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658885|gb|EGE43731.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 237

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 25/196 (12%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           R D++ ++  +   G   + L R IR  S VP+I +S        +   ++G DD V KP
Sbjct: 47  RPDIALLDVMV--PGLDGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKP 104

Query: 103 IHHREILARVAAIYRRL-----------KVSNNRAET-------GPIRVFSDGRDPEVQG 144
                ++AR+ A+ RR              +   AET       G + V +DG +    G
Sbjct: 105 FDGAVLVARIRAVLRRFGHAAGPDGLGQGGAEGDAETFGGVLVFGDLEVDTDGMEVRRAG 164

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           E   L   E R+L    +  G  +++ ++   ++  +    +  VV+ H+    ++LR K
Sbjct: 165 EQVALTPTEMRLLLEFSSAPGTVLSRDRLLERVWD-YGWGGDTRVVDVHV----QRLRTK 219

Query: 205 LGFDPVDSKRFLGYSI 220
           +G D +D+ R  GY +
Sbjct: 220 IGQDRIDTVRGFGYKL 235


>gi|189423658|ref|YP_001950835.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189419917|gb|ACD94315.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 226

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 21/219 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGK-GEKVLELPRI 66
           L K+GY AL    GV           E L+++ RE  D+  ++  L G  G +V    R 
Sbjct: 21  LEKEGYQALVTGTGV-----------EGLETARRELPDLILLDLMLPGMMGTEVCSALRH 69

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
                 +P++ ++        +  F+ G DD + KP   RE++ R+ AI RR     +  
Sbjct: 70  SDKTRGIPVLMLTARGDEIDRVVGFEMGADDYIVKPFSMRELMLRIRAILRRSSQEPDTT 129

Query: 127 E----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           E     G I +        V G    L   E ++L YL  + G+ + +  +   ++G ++
Sbjct: 130 ERQITMGTIVIDCASHRVTVAGSEIELTSTEYKLLLYLAEHGGRVMKRELLLQDVWG-YN 188

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +   V++H+++LR KL +    + + + R  GY ++
Sbjct: 189 FVGDTRTVDTHVTRLRNKLGD--AGEMIKTVRGFGYKLE 225


>gi|161525507|ref|YP_001580519.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|189349765|ref|YP_001945393.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|160342936|gb|ABX16022.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
 gi|189333787|dbj|BAG42857.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 227

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 9/158 (5%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRA 126
           A  QVP++ ++    +   +   + G DD + KP    E+LARV  + RR    N  +R 
Sbjct: 69  AGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGSAPNHPDRI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           +   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++ + FD   
Sbjct: 129 QIADLLLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVWDMNFDS-- 186

Query: 186 EENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           + NV++  I +LR K+ +   FDP  + + R +GY++D
Sbjct: 187 DSNVIDVAIRRLRAKIDD--AFDPKLIHTVRGMGYTLD 222


>gi|75910288|ref|YP_324584.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704013|gb|ABA23689.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD V KP   +E+LAR+ A+ RR   + +   E G +R+         + ++  +
Sbjct: 91  LDAGADDYVIKPFDLKELLARIRALLRRGNTTISTFLEWGGLRLDPANCTVTYKEQLLLM 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E ++LE  + N G  +++ QI   ++   D    ++ V+ HI  +R+KL+     D 
Sbjct: 151 TPKEYQLLELFLRNNGYVLSRRQILDHLWSSIDPP-GQDTVKVHIRGIRQKLKAAGAKDD 209

Query: 210 -VDSKRFLGYSIDWN 223
            +++   LGY ++ N
Sbjct: 210 FIETVYGLGYRLNQN 224


>gi|17987612|ref|NP_540246.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|225852137|ref|YP_002732370.1| transcriptional activator protein copR [Brucella melitensis ATCC
           23457]
 gi|256044314|ref|ZP_05447218.1| Transcriptional activator protein copR [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113151|ref|ZP_05454028.1| Transcriptional activator protein copR [Brucella melitensis bv. 3
           str. Ether]
 gi|256264351|ref|ZP_05466883.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260563668|ref|ZP_05834154.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265990726|ref|ZP_06103283.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994564|ref|ZP_06107121.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|17983321|gb|AAL52510.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|225640502|gb|ACO00416.1| Transcriptional activator protein copR [Brucella melitensis ATCC
           23457]
 gi|260153684|gb|EEW88776.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|262765677|gb|EEZ11466.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263001510|gb|EEZ14085.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094644|gb|EEZ18423.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326408637|gb|ADZ65702.1| transcriptional activator protein copR [Brucella melitensis M28]
 gi|326538359|gb|ADZ86574.1| transcriptional activator protein copR [Brucella melitensis M5-90]
          Length = 235

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 13/156 (8%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   +    +G DD + KP    E+LARV  + RR   S   A+T   
Sbjct: 72  ETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRR--SSPREADTIYR 129

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            G + +         Q     L  RE R+LEYLM + G+ V +T +   ++   FD   +
Sbjct: 130 VGDLELDRLTHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP--Q 187

Query: 187 ENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            NV++ HIS+LR K+    GFD   + + R  GY +
Sbjct: 188 TNVIDVHISRLRSKIEK--GFDEPLLHTVRGAGYML 221


>gi|323465648|gb|ADX69335.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus helveticus H10]
          Length = 238

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121

Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +           ++   + G + +  D    E  G    L  RE  +L YL  + G+ + 
Sbjct: 122 IVKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+  N +    + ++R +GY +
Sbjct: 182 REHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYV 232


>gi|318061516|ref|ZP_07980237.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|333024459|ref|ZP_08452523.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332744311|gb|EGJ74752.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 263

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 13/169 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R ++AH  VP++ ++        L     G DD + KP   RE+ ARV  + RR++
Sbjct: 96  LEVCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVE 155

Query: 121 VSNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +   A T        G + V    R   V+GE   L   E  +L  L       +++ Q
Sbjct: 156 RAALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQ 215

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + ++   D A     V+SHI    K LR K+G + + +   +GY+++
Sbjct: 216 LLAEVWDWAD-ASGTRTVDSHI----KALRRKIGAERIRTVHGVGYALE 259


>gi|317493615|ref|ZP_07952036.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918558|gb|EFV39896.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 220

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 104/229 (45%), Gaps = 23/229 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D  L++ G     G++  + +  ++    + LQ   +  +  ++  L    G  +
Sbjct: 3   ILIVEDDELIQQGLAKALGNESYACDCASTAAQAKSLQQVGQYSLIILDLGLPDLDGASL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L   R  R+   VP++ ++   +++  ++  D+G DD + KP    E+ ARV A+ RR  
Sbjct: 63  LRQWR--RSGVDVPVLVLTARDAIEDRVEGLDAGADDYLVKPFALVELQARVRALIRRFQ 120

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 L+V N        +V  DG   E+  + F L  R       LM   G+ V +  
Sbjct: 121 GHSDNLLQVENIILNLSTQQVLFDGSQIELTPKEFALLSR-------LMMRAGQTVNREI 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +Y   D+ +  N +E HI  LR+    KLG + + + R +GY ++
Sbjct: 174 LQQDLYSWQDD-LSSNTLEVHIHNLRR----KLGKERIKTVRSVGYRLE 217


>gi|313901469|ref|ZP_07834924.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468263|gb|EFR63722.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 256

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 6/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           Q P++ ++   S    +   + G DD V KP   RE++AR+ A+ RR      R + GPI
Sbjct: 103 QTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRR--TEGRRQQIGPI 160

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EENVV 190
            +   G +    G+   L   E ++L  L A  G+   + ++   ++G  +EA  +   V
Sbjct: 161 VIDYAGHEVYRDGQRVALTPTEFKLLATLAAEPGRAFTRQELLDRVWG--EEAFGDPRTV 218

Query: 191 ESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + H+  LR+KL RN    + + + R  GY ++
Sbjct: 219 DVHVRHLREKLERNPSQPEWILTVRGHGYKLN 250


>gi|299067895|emb|CBJ39108.1| putative response regulator transcription regulator protein
           [Ralstonia solanacearum CMR15]
          Length = 249

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 15/171 (8%)

Query: 61  LELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++L  ++R+  Q  +P++ ++     +  +     G DD + KP H  E+ ARV A+ RR
Sbjct: 60  IDLLSVVRSRHQEVLPILFVTAEARERGLVRALGQGADDYLTKPFHIPELRARVEALLRR 119

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +  +      GP       R   + G    L   E ++   L AN G+ +++  IF 
Sbjct: 120 AHPVPYAGMPFAVGPYHFNPQRRLVTLHGAPLALTGIEFQLAMLLFANAGRTLSRDHIFG 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL-----GYSID 221
            ++G  + A     ++SH+S++R KL      +PV+  R +     GY +D
Sbjct: 180 QVWGR-NSAEYTRTIDSHVSRIRLKLH----LEPVNEVRLVAVYKHGYRLD 225


>gi|298736891|ref|YP_003729421.1| OmpR family two-component system response regulator [Helicobacter
           pylori B8]
 gi|298356085|emb|CBI66957.1| two-component system, OmpR family, response regulator [Helicobacter
           pylori B8]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R I     +P+I  S    ++  +   D G DD + KP   +E+LAR+ ++ RR  
Sbjct: 61  LEVCRRISKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSH 120

Query: 121 VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +E G   +F    D R+  +  +   L R E  IL  L++ +G   ++  I    
Sbjct: 121 KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI---- 176

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDW 222
             +  E++        I  +  +LR+K+  +P     + S R +GY +++
Sbjct: 177 -AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKLEY 225


>gi|302557641|ref|ZP_07309983.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
           Tu4000]
 gi|302475259|gb|EFL38352.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
           Tu4000]
          Length = 242

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   LE+ R +R    VP+I ++        +   + G DD V KP   RE++ RV
Sbjct: 63  LMLPGMDGLEVCRRMRGRGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRV 122

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKR 167
            ++ RR + +   A +GP+R      DP       +G    L  RE  +L + + + G+ 
Sbjct: 123 ESVLRRSRPAPA-AASGPLRAAGLAVDPAARRATKRGAELALTVREFDLLAFFLRHPGRA 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            A+ ++   ++G   +  + + V  H+ +LR K+ +
Sbjct: 182 FAREELMREVWGW--DFGDLSTVTVHVRRLRGKVED 215


>gi|224543016|ref|ZP_03683555.1| hypothetical protein CATMIT_02210 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524041|gb|EEF93146.1| hypothetical protein CATMIT_02210 [Catenibacterium mitsuokai DSM
           15897]
          Length = 227

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR   + P+I ++        ++    G DD V KP    E++ARV A  RR K  
Sbjct: 62  LCNTIRRKYKFPIIFVTAKVEDIDKINGLSIGADDYVTKPFQPLELVARVKAQLRRYKNY 121

Query: 123 NNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           N + E        IR+ +D R+     +   L + E  IL  L  ++G  V    +F  +
Sbjct: 122 NEKEEKNEIDFRGIRINNDTREFYFNEKKIELTKTEFAILWELCLHKGNVVKSDDLFLKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF--LGYSID 221
           +G      + N +  HI  LR+K+ +  G +P   K+   +GY I+
Sbjct: 182 WGEDYYKRDNNTIMVHIRHLREKMHDG-GRNPKYIKKVYGVGYKIE 226


>gi|297201439|ref|ZP_06918836.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197713846|gb|EDY57880.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 234

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 32/227 (14%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL +DG+      DG+S LE F +           R D++ ++  +   G   + L R I
Sbjct: 23  ALERDGFAVTAMPDGLSGLEAFRA----------DRPDIALLDVMV--PGLDGVSLCRRI 70

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------- 119
           R  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR         
Sbjct: 71  RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHAGGTDR 130

Query: 120 -KVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +VS + A       G + + ++G +    G+   L   E R+L    +  G  +++ ++
Sbjct: 131 GEVSADAAAGGVLTFGELEIDTEGMEVRRAGQPVALTPTEMRLLLEFSSAPGTVLSRDKL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++  +    +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 191 LERVWD-YGWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 232


>gi|124267939|ref|YP_001021943.1| two-component system response regulator [Methylibium petroleiphilum
           PM1]
 gi|124260714|gb|ABM95708.1| two-component system response regulator [Methylibium petroleiphilum
           PM1]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++++D  L+ DG  A     G +++ F      +   S    D   ++  L G+ G   
Sbjct: 3   ILIVEDDRLLGDGLAAGLRSLGFAVDWFTDGAQADAALSHTPYDAIVLDLGLPGRDGLAW 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R        P++ ++    +   +   D+G DD + KPI   E+ AR+ A+ RR  
Sbjct: 63  LARWRGPGPLQSTPVLVLTARDGIDHRIAGLDTGADDYLIKPIETTELAARLRAVLRR-- 120

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S  R +     G +      +    +G+   L  RE  +LE L+AN  + + K+ I   
Sbjct: 121 -SQGRPQPLWQHGALSYQPAAKAVLWRGKPVVLTARECALLELLLANPQRVLPKSLITEK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +Y  F++ +E N +E HI  LR+K+  KL    V + R +GY++
Sbjct: 180 LYS-FEQEIESNALEVHIHHLRRKIDPKL----VRTVRGMGYAL 218


>gi|329940076|ref|ZP_08289358.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329300902|gb|EGG44798.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 238

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 16/200 (8%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R LV DG+      DG +  G          +++ R     I  +++  G   LE+ R I
Sbjct: 14  RYLVHDGHTVTVVHDGPTALG----------EATRRPPDLLILDWML-PGLDGLEICRRI 62

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           RA    P++ ++   +    L   D G DD + KP   RE++ARV  + RR +      E
Sbjct: 63  RATGDTPVLMLTARSTEDELLLGLDVGADDYMTKPFRPRELVARVRTLLRRTRQPRCEEE 122

Query: 128 ----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                GP+ V  D  +  V G        E R+L  L A   +   +TQ+   +      
Sbjct: 123 RLLSAGPLTVAPDRHEATVHGRPVHCTPAEFRLLSTLAAAPERVFTRTQLLHCVTD-HGR 181

Query: 184 AVEENVVESHISKLRKKLRN 203
           AV E  V+ HI+ LRKK+ +
Sbjct: 182 AVTERTVDMHIANLRKKIES 201


>gi|310827284|ref|YP_003959641.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739018|gb|ADO36678.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 224

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 4/162 (2%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  S ++P+I ++        ++  + G DD + KP    E+LAR+ A  R+  
Sbjct: 63  EVLKYIRERSPELPVIFLTAKDDTGDVVNGLNLGADDYITKPFIFDELLARIKANLRKKA 122

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  NR     + +  D       GE   L + E  +L YL+ N G   ++ QI   ++
Sbjct: 123 AVSPRNRVAFEDLSIDLDTFMVSRGGESIELSKTEFDLLHYLVLNHGLVQSREQILDQVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD    +N+V+ +I  LR K+        + + R  GY I
Sbjct: 183 G-FDYFGNDNIVDVYIKYLRDKIDKPFEKKLIQTVRGRGYVI 223


>gi|299541796|ref|ZP_07052119.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
 gi|298725534|gb|EFI66175.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
          Length = 237

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 23/222 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+K+GY  +   DG   E    +E E+        D+  ++  L  +    +E+ R +R 
Sbjct: 22  LIKEGYKVICAYDGD--EALKKVEEEQ-------PDLMLLDIMLPKRDG--MEVCREVRK 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-------- 121
               P+I ++   S    +   + G DD V KP   RE++ARV A  RRL+V        
Sbjct: 71  KYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQVVTPAAEEA 130

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N    G + +  D      + E   L  RE  +L YL  + G+ + +  +   ++G
Sbjct: 131 EEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTREHLLQTVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            +D   +   V+  I +LR+K+ +       + ++R +GY +
Sbjct: 191 -YDYFGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYL 231


>gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 235

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 15/122 (12%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------------GPIRVFSDGRDPE 141
           G DD + KP   RE+LARV AI RR   S  + E             G + V+ D  +  
Sbjct: 96  GADDYLTKPFSPRELLARVKAILRR--TSKEQQEDDTDDFRDDYRVFGALTVYPDRHEVY 153

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
               +  L  +E  +L YLM +    + + ++   I+G +D   E  +V+ HI KLR K+
Sbjct: 154 KADHLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLRDKI 212

Query: 202 RN 203
            +
Sbjct: 213 ED 214


>gi|237716485|ref|ZP_04546966.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262408083|ref|ZP_06084631.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294645077|ref|ZP_06722803.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294809477|ref|ZP_06768180.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444132|gb|EEO49923.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262354891|gb|EEZ03983.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292639583|gb|EFF57875.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294443295|gb|EFG12059.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295084170|emb|CBK65693.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bacteroides
           xylanisolvens XB1A]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  R+   H +  +I IS   SL+  +   + G DD + KP H  E+ AR+ +
Sbjct: 57  GSGLNLLE--RLKALHKRENVIIISAKDSLEDKVLGLELGADDYLPKPFHLVELNARIKS 114

Query: 115 IYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           + RR        ++  N R E    RVF +  D EV+     L R+E  IL Y +   G+
Sbjct: 115 VIRRHQHDGEIDIRQGNVRIEPDKYRVFVN--DQEVE-----LNRKEYDILLYFINRPGR 167

Query: 167 RVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
            + K  +  +++G   D+    + + + I  LRKKL++
Sbjct: 168 LINKNTLAESVWGDHIDQVDNFDFIYAQIKNLRKKLKD 205


>gi|229187336|ref|ZP_04314479.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228596040|gb|EEK53717.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 222

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   + P+I ++   S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 59  EICRQIRLVKKTPIIIVTSNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDY 118

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 119 -NQQNETNFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 178 VWG-YDVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 220


>gi|319787474|ref|YP_004146949.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465986|gb|ADV27718.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 236

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA S+VP+I ++        +   + G DD V+KP   RE++ARV A  RR   
Sbjct: 73  DVCRQVRAFSEVPVIFLTARGEEIDRVLGLELGGDDYVSKPFSPREMVARVRARLRRRAP 132

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++ A   E G   V   G     +G V  L R E  +LE L+   G  +++ Q+    +
Sbjct: 133 ADDGADWQERGDFAVDRAGHRIRYRGRVLDLTRYEYALLEALLQRPGAILSRAQLMDRAW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                A  +  V++HI  LR KLR      DP+ + R LGY+I
Sbjct: 193 D-STAASGDRTVDTHIKTLRAKLRAAGAEPDPIRTHRGLGYAI 234


>gi|307313311|ref|ZP_07592935.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307320756|ref|ZP_07600167.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306893574|gb|EFN24349.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899324|gb|EFN29959.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 232

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IRA S VP++ ++        +   + G DD + KP + RE+LAR+ AI RR   
Sbjct: 63  ETCRRIRAVSDVPVLMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRRRNG 122

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S   A T   G + +    R   + G    L   +  +L  L  N G+ +++ Q+  A+ 
Sbjct: 123 SAAVARTLRFGRLEIDPGSRSVRIDGRECTLTSYQFDVLVALAENPGRTLSREQLMDAVK 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           G   +A + + ++ HIS++R  + +    DP   +R +
Sbjct: 183 GEELDAFDRS-IDVHISRIRAAIES----DPKHPRRII 215


>gi|253751663|ref|YP_003024804.1| response regulator protein [Streptococcus suis SC84]
 gi|253753565|ref|YP_003026706.1| response regulator protein [Streptococcus suis P1/7]
 gi|253755622|ref|YP_003028762.1| response regulator protein [Streptococcus suis BM407]
 gi|251815952|emb|CAZ51568.1| response regulator protein [Streptococcus suis SC84]
 gi|251818086|emb|CAZ55878.1| response regulator protein [Streptococcus suis BM407]
 gi|251819811|emb|CAR45756.1| response regulator protein [Streptococcus suis P1/7]
          Length = 221

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 81/156 (51%), Gaps = 5/156 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I IS        +   + G DD V+KP     + A++ A  RR+   +  +
Sbjct: 68  IRKTMTMPIIFISSSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSS 127

Query: 127 ETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           E      ++  DGR    + E   L   E +IL  L+  +G+ V+K ++   ++   +E 
Sbjct: 128 ELSIDQFQLSLDGRFSN-ESEQVQLSPTETKILSALLERQGQIVSKDELLEKLWE-NEEF 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++N +  ++++LRKK+ +++GF+ + + R +GY I
Sbjct: 186 IDQNTLNVNMTRLRKKV-SEVGFERIHTVRGVGYLI 220


>gi|229062519|ref|ZP_04199832.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716802|gb|EEL68493.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 242

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 13/186 (6%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+  L+    EE L+   + DV  I   ++      + +   +R  +++P+I +S    
Sbjct: 35  EGYEVLQARDGEEGLEIVRKRDVHLIVLDIMMPKIDGIHMCMKVREIAEMPIIMLSAKTQ 94

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN------NRAETGPIRVFSD 136
               +    +G DD V KP +  E++AR+ +  RR +K+S       N  E G I++   
Sbjct: 95  DMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKMSGASVKDENVFEVGDIKINIA 154

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHIS 195
            R   +  E   L  RE  +LE L  N+G  +   QI+  ++   ++A + +N V  HI 
Sbjct: 155 TRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIYERVWK--EKAFQSDNTVMVHIR 212

Query: 196 KLRKKL 201
           K+R+K+
Sbjct: 213 KIREKI 218


>gi|227514219|ref|ZP_03944268.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087415|gb|EEI22727.1| response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 245

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +++ R +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 77  MDVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 136

Query: 120 -KVSNNRAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
            +V+N++ +    GP+ +  D  + + ++G+   L   E  IL YL+A+   RV +   I
Sbjct: 137 NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGIL-YLLASHPNRVFSADDI 195

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K+    G + V ++   +GY ++
Sbjct: 196 FERVWQQ-ESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 243


>gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 223

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V  +   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222


>gi|161486796|ref|NP_805595.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161501946|ref|NP_455593.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|213021734|ref|ZP_03336181.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213162819|ref|ZP_03348529.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428532|ref|ZP_03361282.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213610054|ref|ZP_03369880.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213857941|ref|ZP_03384912.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289811681|ref|ZP_06542310.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
 gi|289824356|ref|ZP_06543949.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 226

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  +  DG            + L  + +E  S I   ++  G    ++ R +
Sbjct: 18  QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+      R  
Sbjct: 67  RTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ FD   E
Sbjct: 127 INGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N V+  I +LR K+ +      + + + +GY +
Sbjct: 185 TNTVDVAIRRLRAKVDDPFEKKLIMTVQGMGYRL 218


>gi|163781991|ref|ZP_02176990.1| transcriptional regulator (PhoB-like) protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882523|gb|EDP76028.1| transcriptional regulator (PhoB-like) protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 223

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 11/135 (8%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI- 131
           VP++ ++   +    L  F  G DD + KP   RE+ ARV A+ RR+K    R   G + 
Sbjct: 75  VPIVFLTARATEVDRLKGFHLGADDYITKPFSIRELTARVRAVLRRVK----RGREGRVF 130

Query: 132 RVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           RV S   D E     + G    L   E  IL  L+ N G+ V +++I   ++G  D    
Sbjct: 131 RVGSLEVDVERVKVSIGGSEVKLTPSEFNILRCLLENYGRPVNRSRIIEEVWG-HDHEAT 189

Query: 187 ENVVESHISKLRKKL 201
           +  V+ HI  LR KL
Sbjct: 190 DRTVDVHIKHLRDKL 204


>gi|154482564|ref|ZP_02025012.1| hypothetical protein EUBVEN_00231 [Eubacterium ventriosum ATCC
           27560]
 gi|149736589|gb|EDM52475.1| hypothetical protein EUBVEN_00231 [Eubacterium ventriosum ATCC
           27560]
          Length = 227

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P I I+   +    +    +G DD + KP    E+LARV ++ RR K +N+      + 
Sbjct: 83  IPSIFITAMGTTDNKVKGLRAGADDYIAKPFEVVEMLARVESVLRRYKKTNDELVEDDVV 142

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +    R     G+   L  +E  +L  L+ N+   + +  I+  ++G  D   +   ++ 
Sbjct: 143 INFQSRSVTKAGKTLDLTHKEFELLVLLIRNKNIALYRDVIYENVWG-NDYVGDSRTIDL 201

Query: 193 HISKLRKKL 201
           HI +LR+KL
Sbjct: 202 HIQRLRRKL 210


>gi|108562587|ref|YP_626903.1| response regulator [Helicobacter pylori HPAG1]
 gi|107836360|gb|ABF84229.1| response regulator [Helicobacter pylori HPAG1]
 gi|261839028|gb|ACX98793.1| putative transcriptional regulator [Helicobacter pylori 52]
          Length = 225

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R I     +P+I  S    ++  +   D G DD + KP   +E+LAR+ ++ RR  
Sbjct: 61  LEVCRRISKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSH 120

Query: 121 VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +E G   +F    D R+  +  +   L R E  IL  L++ +G   ++  I    
Sbjct: 121 KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI---- 176

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDW 222
             +  E++        I  +  +LR+K+  +P     + S R +GY +++
Sbjct: 177 -AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKLEY 225


>gi|89896284|ref|YP_519771.1| hypothetical protein DSY3538 [Desulfitobacterium hafniense Y51]
 gi|89335732|dbj|BAE85327.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 240

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 17/197 (8%)

Query: 17  ALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPL 75
           AL   +G ++L   N  E    L SS    V  I   ++  G+    +   +R  +  P+
Sbjct: 28  ALLQSEGFLTLRACNGQEALSLLNSS----VDLIILDIMMPGDSGFTICEKMRRITTAPI 83

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NNRAETGP 130
           + +S           FDSG DD + KP    E+L RV AI RR +V      +++++   
Sbjct: 84  LYLSAKSLTADKEMAFDSGGDDYLTKPFIPAELLTRVKAILRRYQVYRGKKLSSKSDRDL 143

Query: 131 IRVFSDGRDPEVQGEVF----PLPRR--ERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           IR+ +    P   GEVF    PL  R  E ++L +L+ NRG   +   ++  ++G     
Sbjct: 144 IRINNLVVHP-TSGEVFLNGTPLLLRPKEYQLLAFLVRNRGTVFSVQNLYEQLWGESYLP 202

Query: 185 VEENVVESHISKLRKKL 201
              N V  HI  LR+K+
Sbjct: 203 SANNTVMVHIRNLRQKI 219


>gi|67921096|ref|ZP_00514615.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857213|gb|EAM52453.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 243

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 12/147 (8%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR  V  N A
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR--VEKNGA 128

Query: 127 ETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              P         I++ ++ R      E   L   E  +LE L++  G+  ++++I   +
Sbjct: 129 PGIPSSGVIAIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEV 188

Query: 178 YGLFDE-AVEENVVESHISKLRKKLRN 203
           +G   E  V+  VV+ HIS+LR KL +
Sbjct: 189 WGYTPERHVDTRVVDVHISRLRAKLED 215


>gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 246

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 9/165 (5%)

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA + +VP++ ++   +++  +    +G DD V KP    E++AR+  + RR  
Sbjct: 80  EVLRRVRAGTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRAG 139

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++  +  +    G + +  D  +         L   E  +L YLM N  + ++K QI   
Sbjct: 140 MAAAQRSSELVVGDLVLDEDAHEVRRADRPIELTATEFELLRYLMRNPRRVLSKAQILDR 199

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           ++  +D   + NVVE ++S LRKK+    G+ P + + R  GY +
Sbjct: 200 VWN-YDFGGQSNVVELYVSYLRKKI--DAGYAPMIHTVRGAGYVL 241


>gi|325285800|ref|YP_004261590.1| winged helix family two component transcriptional regulator
           [Cellulophaga lytica DSM 7489]
 gi|324321254|gb|ADY28719.1| two component transcriptional regulator, winged helix family
           [Cellulophaga lytica DSM 7489]
          Length = 229

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 40/169 (23%)

Query: 78  ISDYPSLQTTL---------DF-----FDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           I + P LQ T+         D+     FD+G DD + KPI  + ++++V A+ RRLK  +
Sbjct: 71  IRNTPGLQNTIITFLTARGEDYSQVAGFDAGADDCITKPIKPKVLVSKVKALLRRLK-ED 129

Query: 124 NRAETGPI-------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           N AE   I             +V +DG++         LPR+E  +L  L +   K   +
Sbjct: 130 NAAEQEDIVKVGNIVINREEYKVINDGQE-------IVLPRKEFELLALLTSKPNKVYKR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             I   ++G  +  V    ++ HI    +KLR K+G D   + + +GY 
Sbjct: 183 EVILDKVWG-NEVVVGGRTIDVHI----RKLREKIGDDHFKTVKGVGYK 226


>gi|320355415|ref|YP_004196754.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320123917|gb|ADW19463.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 231

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 24/221 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+K G+     D G           EE LQ  ARE + A+   L+  G+   E+ R +R 
Sbjct: 23  LIKAGFNVTCADSG-----------EEALQLLAREPIDAMVLDLMLPGKDGNEVCRAVRG 71

Query: 70  HSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
              +   P+I ++        +   + G DD V KP   R ++AR+ A  RR    V + 
Sbjct: 72  QEAIKGLPIIMLTAKSEEDDIVSGLECGADDYVTKPFSPRVLIARLEAALRRTPEPVVDA 131

Query: 125 RAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + G I      +     +  V G+   L   E  IL  L    G   ++ QI   + G
Sbjct: 132 DEQAGFISRHGMDIHPGRHEVRVDGQEIHLTASEFTILALLAGRPGWVFSRQQIIDQVRG 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D ++    V+  I  LRKKL +      +++ R +GY I
Sbjct: 192 -YDYSITPRAVDVQIFGLRKKLGS--AGTCIETVRGIGYRI 229


>gi|300933852|ref|ZP_07149108.1| two-component system response regulator KdpE [Corynebacterium
           resistens DSM 45100]
          Length = 230

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 15/163 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R+ S VP++ +S        ++  D G DD V KP    E            +
Sbjct: 63  LDVLRALRSWSDVPVLVVSARHDEAGKINALDEGADDYVTKPFSVGE--LLARLRAALRR 120

Query: 121 VSNNRAETGPIRVFSDGRD----PE----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N  A   P+   SDGR     PE    V G    L  RE  I+E+++ ++G+ V K +
Sbjct: 121 APNEEAPETPVVKTSDGRVQFDLPEKRVTVDGHEVHLTPREWGIVEHMIRHQGRLVTKVE 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
           +  +++G   +  E N +  ++S+LR KL      DP + + F
Sbjct: 181 LLQSVWGASYKK-ETNYLRVYMSQLRSKLEQ----DPANPQYF 218


>gi|299066501|emb|CBJ37691.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum CMR15]
          Length = 230

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 17/164 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
           Q+P+I ++     Q  +   D G DD V KP   +E+LAR+ A+ RR         + ++
Sbjct: 69  QIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 128

Query: 123 NNRAETGPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             R +    RV +   + E  ++ ++ P    E R+L +LM +  +  +++Q+   ++G 
Sbjct: 129 GLRLDPATHRVTAMNSESENPIKLDLGPT---EFRLLHFLMTHPERVHSRSQLLDQVWG- 184

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D   VEE  V+ HI +LR  L        +++ R  GY +  N
Sbjct: 185 -DHVFVEERTVDVHIKRLRAALAPGGYSTMIETVRGSGYRLARN 227


>gi|227513040|ref|ZP_03943089.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083797|gb|EEI19109.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 245

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 107/228 (46%), Gaps = 30/228 (13%)

Query: 12  KDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           K+G+   F  DG+ +++ FN  + E W       D+  ++  L  K    +E+ + IRA 
Sbjct: 22  KEGWDVSFAYDGIEAVDMFNE-DPESW-------DMITLDLNLPKKDG--MEVAKEIRAK 71

Query: 71  SQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127
           S+ VP+I ++   S    +  F+ G DD V KP     ++AR+ A+ RR        E  
Sbjct: 72  SKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRRAHTEAQVEEPE 131

Query: 128 -------------TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQI 173
                        T   ++ ++ R+  + G++ P L  +E  +L  L     +  ++ Q+
Sbjct: 132 HSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQKPRQVFSREQL 191

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G ++   +E  V++HI KLR+K+  ++G   + +   +GY  D
Sbjct: 192 LELVWG-YEYYGDERTVDAHIKKLRQKI-ERVGPQVIQTVWGVGYKFD 237


>gi|253990464|ref|YP_003041820.1| DNA-binding transcriptional activator KdpE [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638969|emb|CAR67584.1| transcriptional regulatory protein kdpe (ec 2.7.3.-) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781914|emb|CAQ85078.1| transcriptional regulatory protein [Photorhabdus asymbiotica]
          Length = 230

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 14/162 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L R +R  S +P+I +S   +    +   D+G DD ++KP    E+LARV    RR  
Sbjct: 66  INLIRDLRQWSSIPVIVLSARDTETVKVAALDAGADDYLSKPFGISELLARVRVALRRFA 125

Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++      PI  FSD       R      +   L   E R+L  L+AN GK + + Q+ 
Sbjct: 126 RTHQEE---PIVHFSDVTVDLINRRITKSDKELHLTPIEFRLLGELLANSGKVLTQRQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           + ++G     VE N    ++      LR KL  DP   K  L
Sbjct: 183 NQVWG--PNYVEHN---HYLRIYMGHLRQKLETDPTRPKHLL 219


>gi|182414670|ref|YP_001819736.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177841884|gb|ACB76136.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 249

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE   +  A   VP+I ++   +  T +   + G DD + KP  + E++AR+ A
Sbjct: 63  GSGFTLLE--ELKGADINVPVIFLTGEGTETTKVRGLEMGGDDYITKPFSYAELVARIRA 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRD-------PEVQGEVFP------LPRRERRILEYLM 161
           + RR +   +   T  +RV  +  D       P+    +FP      L R+E  IL YL 
Sbjct: 121 VLRRAESKTDLNLTKNVRVGDEPFDFCGAKIVPDRLEIIFPDGTVEKLGRKELGILAYLN 180

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           AN+G  + +  +  A++G+  + V    ++ +I K+R+  + + L      +   +GY  
Sbjct: 181 ANQGAVITRKALIHAVWGIHAD-VRSRSLDQYIVKVRELFKEHGLDLSTFRTVHGIGYIF 239

Query: 221 D 221
           D
Sbjct: 240 D 240


>gi|168177980|ref|ZP_02612644.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226947863|ref|YP_002802954.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182671519|gb|EDT83493.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226844534|gb|ACO87200.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 14/207 (6%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EG+N  +    EE L+   RE+V+ +   ++      LE+ +  R    +P++ +S    
Sbjct: 25  EGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEVCKRAREKYSIPILMLSAKVE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFSD 136
               ++   +G DD V KP +H E+  R+ A+ RR       +++S+N      + +   
Sbjct: 85  DMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFLNTKMQISDNIIRIESMVIDKK 144

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHIS 195
                +      L  RE  IL  L  NRG   +  +IF  ++   + ++   N V  H+S
Sbjct: 145 QHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFEKVWKERYYQS--NNTVMVHMS 202

Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +LR K+   + G   + +   +GY I+
Sbjct: 203 RLRDKIEQHMEGSKVIHTVWGVGYKIE 229


>gi|67906524|gb|AAY82630.1| predicted response regulator [uncultured bacterium MedeBAC49C08]
          Length = 229

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 86/165 (52%), Gaps = 10/165 (6%)

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ RI+R+  +    P++ ++        +  F+ G DD + KP   RE + RVAA+ +
Sbjct: 62  LEICRILRSSKKTKNTPIMMVTAKGEEIDRIVGFELGADDYIVKPFSIREFMLRVAAMLK 121

Query: 118 RL--KVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   K++N+  +   G + +       +++ +  PL  +E  +L YL+   G+   +  +
Sbjct: 122 RSGDKINNDEEKIIFGSLEIDIAAHRVKLKDKEVPLTAKEFSLLHYLVERIGRVSTRDAL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              ++G ++  V    V++H+ +LR KL + +G + +++ R +GY
Sbjct: 182 LDDVWG-YNCEVTTRTVDTHVKRLRAKLSD-VG-NNIETVRGVGY 223


>gi|71279016|ref|YP_268481.1| transcriptional regulatory protein CpxR [Colwellia psychrerythraea
           34H]
 gi|71144756|gb|AAZ25229.1| transcriptional regulatory protein CpxR [Colwellia psychrerythraea
           34H]
          Length = 242

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNR---AETGP--------IRVFSDGRDPEV 142
           G DD + KP  HRE+LAR+ AI RR+ +  ++   A   P        ++V    R+   
Sbjct: 101 GADDYLAKPFKHRELLARIKAILRRISIVKSQSTLAVNAPTKQLTINQVKVNQATREITC 160

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +  +  L   E  +L Y++ N  K ++K +I   +      +  +  V+ H+  +R+KL 
Sbjct: 161 RERLLELTGTEYLVLVYMIENHSKIISKAEISEKVLQ-RKLSPYDRTVDVHVGNVRRKL- 218

Query: 203 NKLGFDPVDSKR 214
             L  DP+D  +
Sbjct: 219 --LAIDPIDKMK 228


>gi|53714028|ref|YP_100020.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60682225|ref|YP_212369.1| putative two component system response regulator [Bacteroides
           fragilis NCTC 9343]
 gi|253564671|ref|ZP_04842127.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|265766352|ref|ZP_06094393.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|52216893|dbj|BAD49486.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60493659|emb|CAH08448.1| putative two component system response regulator [Bacteroides
           fragilis NCTC 9343]
 gi|251946136|gb|EES86513.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|263254020|gb|EEZ25485.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
          Length = 225

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 18/175 (10%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  + +R    V +I   D  SL   +   + G DD + KP H  E+ AR+ +
Sbjct: 57  GNGLNLLEQLKKMRKRENVIIISAKD--SLDDKVLGLELGADDYLPKPFHLAELNARIKS 114

Query: 115 IYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           + RR        ++++N R      +VF D ++ E       L R+E  IL Y     G+
Sbjct: 115 VIRRQRRDGEMDIRLANIRIVPDTFQVFVDDKEIE-------LNRKEYDILLYFANRPGR 167

Query: 167 RVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V K  +  +++G   D+    + + + I  LRKKL++      + +    GY +
Sbjct: 168 LVNKNTLAESVWGDHIDQVDNFDFIYAQIKNLRKKLKDAGALAELKAVYGFGYKM 222


>gi|254224639|ref|ZP_04918255.1| DNA-binding response regulator [Vibrio cholerae V51]
 gi|125622702|gb|EAZ51020.1| DNA-binding response regulator [Vibrio cholerae V51]
          Length = 218

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I RA   +P++ ++    ++  +   D G D+ + KP    E+LAR+  I RR   S
Sbjct: 63  LRQIRRAGYTLPVMILTARDDIRDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 119

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  AE     G + +    ++     +   L R E +IL  LM   G+ ++K  +  A++
Sbjct: 120 SGSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++E   +N +E HI  LRKKL + L    + + R +GY I+
Sbjct: 180 G-WEEGSSDNAIEVHIHNLRKKLPDNL----IRNVRGVGYMIE 217


>gi|110633256|ref|YP_673464.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284240|gb|ABG62299.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 224

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 9/133 (6%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLP 150
           +G DD + KP    E+LARV  + RR    +       G + +          G+   L 
Sbjct: 93  AGGDDYLTKPYAFSELLARVEVLKRRAGTRDVETLYRAGDLELDRLSHTVRRGGQEITLQ 152

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209
            RE R+LEYLM + G+ V +T +   ++   FD   + NV++ H+S+LR K+    GFD 
Sbjct: 153 PREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP--QTNVIDVHVSRLRGKIER--GFDK 208

Query: 210 --VDSKRFLGYSI 220
             + + R  GY I
Sbjct: 209 PILHTVRGAGYMI 221


>gi|308068910|ref|YP_003870515.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305858189|gb|ADM69977.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 231

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 13/157 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L++ R IR    VP++ +S        +   + G DD + KP   +E+++R+ A +R+  
Sbjct: 62  LDVCRSIRNSYNVPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELVSRIKAHFRKVD 121

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   L  SN +A+  P+ +     +  +      L  +E +IL  LM +    + +
Sbjct: 122 RLFKEWDELSPSNEKAD-APLILNDKTFEAFLNSRKLDLSTKEFQILSILMRHPNHVLTR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            QI+  ++G  DE  E N V  HI  +RKKL ++  F
Sbjct: 181 EQIYENVWG--DEYGEINTVTVHIKNIRKKLGSEYDF 215


>gi|325678043|ref|ZP_08157680.1| putative transcriptional regulatory protein ResD [Ruminococcus
           albus 8]
 gi|324110260|gb|EGC04439.1| putative transcriptional regulatory protein ResD [Ruminococcus
           albus 8]
          Length = 223

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 81/160 (50%), Gaps = 6/160 (3%)

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E    +R+ + ++P+I ++    + +    +  G+DD + KPI   E++ ++ A+ RR K
Sbjct: 62  EFAETVRSLNKEIPIIFMTAKDDMNSKQRGYRLGIDDYLVKPIDLEELVLKIGAVMRRAK 121

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S ++    G + + +D +   + GE   L  RE  +L  L++N  K   + Q+ +  + 
Sbjct: 122 ISLSKVLNVGSLTMNADEQSCTLNGEEIALTVREFNLLYKLLSNPRKTFTRAQLMNEFWD 181

Query: 180 LFDEAVEE-NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  EA      V+ ++ KLR+K  +   F+ V +   LGY
Sbjct: 182 I--EATSGLRSVDVYMRKLREKFEDCKDFEIV-TVHGLGY 218


>gi|326203080|ref|ZP_08192946.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986726|gb|EGD47556.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 239

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 18/169 (10%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +R       +P+I +++       L   + G DD + KP   RE+ +R+ AI+R
Sbjct: 63  LEVCRKLRQECNTRDIPIIFLTEKKDEFDVLLGLEVGADDYMVKPFSIRELHSRIKAIWR 122

Query: 118 RLKVSNNRA-ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R +   NRA E   I++ +      GR           P++E  +L +++ N+GK + + 
Sbjct: 123 RTRF--NRAKELDNIKLNNLIFDIQGRTVSNGNISIKFPQKEFELLMFMIINKGKVLNRN 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I   I+G  D   +   ++ HI  LRKKL      D +D+K     SI
Sbjct: 181 YIIKQIWG-SDRYNDSRTLDVHIRYLRKKL------DVLDNKHLYIESI 222


>gi|159027076|emb|CAO89261.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 250

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 14/200 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL ++GY AL   DG +      L+ +E     +R D+  ++  L       L++ R++R
Sbjct: 37  ALEEEGYEALGVSDGRA--ALELLQSQESNHGESRFDLVVLDLML--PQISGLDICRLLR 92

Query: 69  AHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
            H  + P++ +S   S    +   + G DD + KP   RE++AR  A+ RR   ++  A 
Sbjct: 93  YHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRALIRRQGFTSLAA- 151

Query: 128 TGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             P+R F D           V+ E   L  +E R+L+  M+   +  ++ Q+   I+G  
Sbjct: 152 -APVRKFRDVLLYTQECRVTVRHEEINLSPKEFRLLDLFMSYPRRVWSREQLIEQIWGP- 209

Query: 182 DEAVEENVVESHISKLRKKL 201
           D   +   V+ HI  LR+KL
Sbjct: 210 DFLGDTKTVDVHIRWLREKL 229


>gi|126658619|ref|ZP_01729765.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620056|gb|EAZ90779.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 243

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++      
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGAPG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+       I++ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVISIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|3401948|dbj|BAA32131.1| Orf3 [Streptomyces griseus]
          Length = 224

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 12/182 (6%)

Query: 28  GFNSLEFEEWLQSSAREDVSAIEAF----LIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           GF      +W ++     +SA +      ++  G+ +  L    RA   VP++ ++   S
Sbjct: 24  GFAWDCASDWPEADVLLHLSAYDCVVLDRMVPSGDTLAPLEGRRRAGWSVPVLCLTALDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPE 141
           L   L   +SG DD + KP   RE++ RV  + RR   ++ R  +  G   V  D    E
Sbjct: 84  LDERLRGLESGADDYLAKPFSMRELVLRVRGLSRR---ASARLPSFLGCADVVMDVARHE 140

Query: 142 VQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
           V+  G +  L  +E  +L+ L+ +R   V +T +    +    + V  NVV++ ++ LR+
Sbjct: 141 VRRGGVLLSLSPKEYAVLQQLLVHRDTVVTRTGLLEHCWDEMADPV-SNVVDAVVAGLRR 199

Query: 200 KL 201
           KL
Sbjct: 200 KL 201


>gi|88857553|ref|ZP_01132196.1| response regulator receiver domain protein (CheY-like)
           [Pseudoalteromonas tunicata D2]
 gi|88820750|gb|EAR30562.1| response regulator receiver domain protein (CheY-like)
           [Pseudoalteromonas tunicata D2]
          Length = 227

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 5/156 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ ++     Q  L     G+DD + KP    E++ R  AI +R   S  + 
Sbjct: 67  IRLFSDVPIVMLTAIVEQQKKLQGLQLGIDDYICKPFDAMEVVLRAKAILKR---SIGQV 123

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           +   + + +D  + +    V  L   E  + E L  N  +  ++ +I    Y    + + 
Sbjct: 124 QYNTLALNADALEIKTPLGVVSLSHSEFSLFELLFINHERIFSRDKIIELAYPELHD-IN 182

Query: 187 ENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +  ++SHI  +RKK +  L    P++S    GY I+
Sbjct: 183 DRTIDSHIKNIRKKFKVTLNAVAPIESVYGAGYRIN 218


>gi|330827712|ref|YP_004390664.1| KDP operon transcriptional regulatory protein KdpE [Aeromonas
           veronii B565]
 gi|328802848|gb|AEB48047.1| KDP operon transcriptional regulatory protein KdpE [Aeromonas
           veronii B565]
          Length = 227

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G +VL+    IR H   P++ +S   S Q  +   D+G +D ++KP    E++AR+  
Sbjct: 58  GDGIQVLQ---AIREHHPNPVLVLSARDSEQEKVRLLDAGANDYMSKPFGIGEMMARIRV 114

Query: 115 IYR-RLKVSNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + R R  VS+      P   + +        ++ E  PL R+E  +L+ L+ + GK V +
Sbjct: 115 LLRQRAGVSSGERRHFPQCGLTLDISSHKVTMKEEEIPLSRKEFALLQALVCHPGKLVMQ 174

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           TQ+ + I+G   +  + + +   I+ LRKKL
Sbjct: 175 TQLLNDIWGPSHKE-DTHYLRIVIASLRKKL 204


>gi|325830597|ref|ZP_08164018.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|325487343|gb|EGC89785.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 313

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 7/160 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R + AH+  P + ++        +     G DD + KP   +E++ R+AA+ RR   + N
Sbjct: 153 RQLPAHTSTPALFLTAKDEPFDRVSGLTLGADDYIAKPFLPQELVLRIAAVLRRCYAAEN 212

Query: 125 R-AETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              E    RV F+        G+  PL  +E  IL  L  N G+ V    +  A +G   
Sbjct: 213 PLLELAASRVNFATAEVERADGQTVPLTAKEHEILSVLARNAGRIVTIDSLCEACWG--T 270

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220
               EN + +HI +LR+K+       PV   + R LGY +
Sbjct: 271 SFGYENSLMAHIRRLREKIEADPS-APVSLVTARGLGYKL 309


>gi|307564544|ref|ZP_07627085.1| response regulator receiver domain protein [Prevotella amnii CRIS
           21A-A]
 gi|307346904|gb|EFN92200.1| response regulator receiver domain protein [Prevotella amnii CRIS
           21A-A]
          Length = 234

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 102/217 (47%), Gaps = 24/217 (11%)

Query: 14  GYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HS 71
           GY  +   DG+  L+ FN  +F+  +       +  ++ F         +L + IR  + 
Sbjct: 26  GYEVMVAYDGMMGLQLFNKYDFKLIISDII---LPKLDGF---------DLCKEIRTKNK 73

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            VP++ ++   +    L+ FD G DD + KP   RE++AR+  + +R       +E   +
Sbjct: 74  HVPILMLTALGTTDDKLEGFDVGADDYMVKPFDLRELVARMKVLLKRNSSQIYESEGNAV 133

Query: 132 R-VFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183
             V++D + +P +      G    L  +E  +L+Y+M +  + + +T+I   ++G  FD 
Sbjct: 134 DIVYADLQINPNLHECKRGGVAIKLTPKEYNLLKYMMLHADRIIPRTEIAEKVWGTHFDT 193

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 194 GT--NFIDVYINYLRKKIDRSFPVKLIHTKPGIGFVL 228


>gi|291536113|emb|CBL09225.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 224

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR   ++P+I +S        +  F+ G+DD V KP   RE++ RV  +  R   +N 
Sbjct: 65  REIRKFKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISR---NNK 121

Query: 125 RAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   G   +F          GR   V G+   +  +E  +L YL+ NR   + + ++ + 
Sbjct: 122 KDVRGGHEIFQAEGLVVDFTGRTVTVDGKRVEMSPKEYELLFYLVRNRNIALDREKLITE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G +D   ++  +++HI  LR  L
Sbjct: 182 VWG-YDYYGDDRTLDTHIKLLRSSL 205


>gi|270290038|ref|ZP_06196264.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Pediococcus acidilactici 7_4]
 gi|270281575|gb|EFA27407.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Pediococcus acidilactici 7_4]
          Length = 229

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +R  S++P++ +S        +    +G DD V KP +  EI+ARV ++ RR +
Sbjct: 61  MQVVREVRKDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRSE 120

Query: 121 --VSNNRAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
             V+++  E    GP+ + SD  + + + G+   L   E  IL YL+A+   RV +  +I
Sbjct: 121 KDVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGIL-YLLASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           F  ++   +  +    V  H+S LR K+    G + V ++   +GY +
Sbjct: 180 FERVWQQ-ESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYKV 226


>gi|229826144|ref|ZP_04452213.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC
           49176]
 gi|229789014|gb|EEP25128.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC
           49176]
          Length = 257

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 24/204 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LV +GY     +D V+  G   L+ EE        D+S     ++  G   L + + IR 
Sbjct: 44  LVSEGYEVRKANDAVT--GLAILKSEE--------DISLAILDIMMPGMDGLSMVKKIRE 93

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126
            S +P+I +S   +    +    +G DD V KP +  E+ ARV A  RR    N+     
Sbjct: 94  TSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRFTEFNSGQKAG 153

Query: 127 --------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E GP+ +    R+     +   L   E  IL  L +N G+  +   IF+ ++
Sbjct: 154 VDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVFSTDDIFTRVW 213

Query: 179 GLFDEAVE-ENVVESHISKLRKKL 201
              ++A E  N V  HI +LR+K+
Sbjct: 214 N--EKAFEGNNTVMVHIRRLREKI 235


>gi|229141822|ref|ZP_04270350.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|228641658|gb|EEK97961.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 222

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 59  EICRKIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSN- 117

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 118 CNQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 178 VWG-HNVVVNPNVVDLYIGYVRKKLKCEKKNRYIQTIHGRGYSM 220


>gi|227499853|ref|ZP_03929946.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227217962|gb|EEI83235.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 237

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 26/204 (12%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L+KD Y+     DG  +LE F+  E +  +       +S         GE+VL   + IR
Sbjct: 23  LIKDNYVVFQAYDGKEALEIFDKEEIDLVILDLMLPKLS---------GEEVL---KNIR 70

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127
             S+VP+I  S        ++    G DD V KP  ++E++ RV A+ RR++  N  RA+
Sbjct: 71  NKSKVPVIITSAKVEEFDRINGLRLGADDYVTKPFSNKELVERVKAVLRRIEKYNIPRAD 130

Query: 128 TGPIRVFSDGR---DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              I   +DGR   D +       GE   L + E  I+  L +N  K   + +I    +G
Sbjct: 131 ---IIKTNDGRLLMDLKYNIFLKDGEEVSLTKNEFSIIRTLFSNPNKIFTRDEIIELTFG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
           L D    +  +++HI  +R+K+ +
Sbjct: 188 L-DYDAYDRAIDTHIKNIRQKIED 210


>gi|254524291|ref|ZP_05136346.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas sp. SKA14]
 gi|219721882|gb|EED40407.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas sp. SKA14]
          Length = 229

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 25/193 (12%)

Query: 42  ARE---DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           ARE   DV  ++  L G  G  VL   R +R   Q P+I ++    +   +     G DD
Sbjct: 40  AREFDYDVIVLDVMLPGMDGFNVL---RELRRSKQTPVIMLTARDRVDDRVHGLGQGADD 96

Query: 98  VVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            + KP    E+LAR+ A+ RR        L+V + +      R + DG   ++ G+ F L
Sbjct: 97  YLVKPFSFIELLARLQALVRRGRQQEPTELQVGDLQVNLLARRAYRDGARLDLTGKEFAL 156

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
                  L  L   RG+ ++KT I + ++ + FD     NVVE  I +LR KL       
Sbjct: 157 -------LALLAQRRGQILSKTVIAAQVWDINFDS--NTNVVEVAIKRLRSKLDGPYPSK 207

Query: 209 PVDSKRFLGYSID 221
            + + R +GY ++
Sbjct: 208 LLHTVRGMGYVLE 220


>gi|182420209|ref|ZP_02951439.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237665789|ref|ZP_04525777.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182375907|gb|EDT73498.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237658736|gb|EEP56288.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 226

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR   ++P+I ++        ++    G DD ++KP    E++ARV A  RR  + N  +
Sbjct: 68  IRKKYKMPVIFLTAKSQEIDMINGLTLGADDYISKPFSSLELIARVKAQLRRYTILNLNS 127

Query: 127 ETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +   IRV      ++  +  V+G    L   E +ILE +  NR K     +++  I+   
Sbjct: 128 DEKIIRVGDLVLNTEMHEVTVKGNEVRLTPTEYKILEVMCKNRNKVFTVEELYEFIWK-E 186

Query: 182 DEAVEENVVESHISKLRKKL 201
             +V +  +  HI+KLR+K+
Sbjct: 187 KYSVSDTSIMVHITKLRRKI 206


>gi|167755548|ref|ZP_02427675.1| hypothetical protein CLORAM_01062 [Clostridium ramosum DSM 1402]
 gi|167704487|gb|EDS19066.1| hypothetical protein CLORAM_01062 [Clostridium ramosum DSM 1402]
          Length = 221

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 79/154 (51%), Gaps = 2/154 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126
           R +S  P+I ++   +    L   + G DD V KP +   +LAR+ A+ +R +  S+   
Sbjct: 68  RKNSSKPIIIVTSRNNEMDELMCINYGADDFVTKPYNPLILLARIEAVLKRTQPTSDVLI 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
               I++         + +V  L + E +I  +L+ +RGK  ++ ++ + ++   D  V+
Sbjct: 128 SYEKIKLDVSKSSIIDKNKVIELSKNELKIFYFLLLHRGKIKSREELMAYLWD-SDMFVD 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +N +  +I++LRKKL +    D + ++R  GY I
Sbjct: 187 DNTLTVNINRLRKKLEDIGLNDVIHTRRGQGYII 220


>gi|167587464|ref|ZP_02379852.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 233

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 76  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R +    RV +     E++ ++ P    E R+L + M +  +  ++TQ+   ++G  D
Sbjct: 136 GLRLDPATHRVAAHADGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 190

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 191 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|163867950|ref|YP_001609154.1| transcriptional regulator OmpR [Bartonella tribocorum CIP 105476]
 gi|161017601|emb|CAK01159.1| transcriptional regulator OmpR [Bartonella tribocorum CIP 105476]
          Length = 234

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +++  +     +G  +    +      L +S   D+  ++  +   GE  +
Sbjct: 15  LLVIDDDTRIRNLLLQFLIKNGFRVSVSANANEARKLLASLDFDLLIVDVMM--PGENGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L   +R    VP++ ++        +   ++G DD + KP   RE+L R+ AI RR   
Sbjct: 73  SLTYSLRQTKDVPILMLTALSETDNRIRGLEAGADDYLAKPFDPRELLLRINAILRRGFP 132

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +S  + E    GP       R+ +  GE+  L  +E++++     N G  + + Q     
Sbjct: 133 LSQPKIEQIVFGPYIFSISRRELKRGGEIIKLTDKEQKMMIIFAENAGNIIPRHQ----- 187

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + + D  + E  ++  I++LR+K+ RN      + + R +GY +
Sbjct: 188 FAMDDNTIGERAIDVQINRLRRKIERNPALPIWLQTVRGIGYKL 231


>gi|146342861|ref|YP_001207909.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146195667|emb|CAL79694.1| putative Two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
          Length = 243

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 22/175 (12%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   +L R IR  S VP++ ++     ++ ++    G DD V KP   RE+  R+  I 
Sbjct: 76  GESGFDLARSIRTQSSVPIVMLTARSEPESRIEGLQLGADDYVAKPFEPRELALRIGNIL 135

Query: 117 RRLKVSN-----NRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAK 170
           +R           +   GP  ++   R    QG E+  L  RER +L  L   RG+ V +
Sbjct: 136 KRAAPPPAEEVVEQISFGPF-IYHLARGELKQGDEIVHLTDREREMLRILANARGETVPR 194

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSI 220
                A+ G  +  V E  V+  I++LR+KL +    DP +     + R +GY +
Sbjct: 195 ----GALTG--NGTVNERAVDVQINRLRRKLES----DPANPLFLQAVRGIGYRL 239


>gi|120609062|ref|YP_968740.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120587526|gb|ABM30966.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 236

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 17/165 (10%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S VP+I +S        +   D+G DD + KP    E+LARV A  RR + +
Sbjct: 67  LIRDVRGWSAVPIIVLSARTDEADKIAALDAGADDYLTKPFGTGELLARVRANLRRPRPA 126

Query: 123 NN---RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                +AE        G I V    R     G V  L   E R+L  L+AN G+ + + Q
Sbjct: 127 TGQGLQAEAAEPVFRFGDIEVDRGARLVRRAGTVVHLTPTEYRMLTVLVANAGRVITQRQ 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
           +   ++G           +SH  ++    LR KL  DP   +  L
Sbjct: 187 LLREVWG------PARSDQSHYLRIYMGHLRQKLEADPAQPRHLL 225


>gi|254976863|ref|ZP_05273335.1| DNA-binding response regulator [Clostridium difficile QCD-66c26]
 gi|255094250|ref|ZP_05323728.1| DNA-binding response regulator [Clostridium difficile CIP 107932]
 gi|255316003|ref|ZP_05357586.1| DNA-binding response regulator [Clostridium difficile QCD-76w55]
 gi|255518660|ref|ZP_05386336.1| DNA-binding response regulator [Clostridium difficile QCD-97b34]
 gi|255651782|ref|ZP_05398684.1| DNA-binding response regulator [Clostridium difficile QCD-37x79]
 gi|260684808|ref|YP_003216093.1| hypothetical protein CD196_3079 [Clostridium difficile CD196]
 gi|260688466|ref|YP_003219600.1| hypothetical protein CDR20291_3125 [Clostridium difficile R20291]
 gi|306521572|ref|ZP_07407919.1| hypothetical protein CdifQ_18911 [Clostridium difficile QCD-32g58]
 gi|260210971|emb|CBA66245.1| putative uncharacterized protein [Clostridium difficile CD196]
 gi|260214483|emb|CBE06963.1| putative uncharacterized protein [Clostridium difficile R20291]
          Length = 232

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 28/203 (13%)

Query: 26  LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           L+  N +   E+       D++ ++  L   G     L + IR     P+I ++      
Sbjct: 36  LDALNCINLNEF-------DLAILDVML--PGVNGFSLCQKIREKYTYPIIMLTAKDEET 86

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP----------IRVFS 135
             +     G DD V KP    E++ARV A  RR K  +   ++G           + + +
Sbjct: 87  DKITGLTLGADDYVTKPFRPLELVARVKAQIRRYKKYSGSLQSGEELSHIFSFLGLELNT 146

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESH 193
              +  + G+   L   E  IL  L+ N+G  V    +F AI+   DE   +  N +  H
Sbjct: 147 QTYECHLNGKALSLTPTEFSILHVLLKNKGSVVNSENLFHAIWK--DEYYNKSNNTITVH 204

Query: 194 ISKLRKKLRNKLGFDPVDSKRFL 216
           I  LR+KL      D VD  +++
Sbjct: 205 IRHLREKLG-----DTVDEAKYI 222


>gi|89054785|ref|YP_510236.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864334|gb|ABD55211.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 228

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETG 129
           ++P+I +S        +   ++G DD + KP    E+LAR+    RR++ S    R E  
Sbjct: 78  KIPVIMLSARSEDTDKVRGLETGADDYITKPYSVAELLARLRTQLRRVRPSTVAERLEYE 137

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +          G+   L   E R+L   M   G+  ++ Q+   ++G  D  V+   
Sbjct: 138 DIAIDLTEHRVYRGGDTLSLGPTEFRLLSAFMERPGRVWSREQLLDRVWG-RDIYVDSRT 196

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V+ H+ +LRK L+     DP+ + R  GY++
Sbjct: 197 VDVHVGRLRKALKVGEAGDPIRTVRGAGYAL 227


>gi|77459741|ref|YP_349248.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383744|gb|ABA75257.1| putative two-component response regulator transcriptional
           regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 227

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ IS    +   +    +G DD + KP    E+ ARV  + RR   +  +  T  + 
Sbjct: 74  TPILMISALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRRQNSNGAQPTTLQVA 133

Query: 133 ------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
                 +  + R  E   +V  L   E ++LE+LM N G+ +++  IF  ++G  FD   
Sbjct: 134 DLQLDLISHEARRAE---QVLTLLPTEYKLLEFLMRNSGQILSRMMIFEEVWGYHFDPGT 190

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             N+++ HI +LRKK+        + + R  GY I
Sbjct: 191 --NLIDVHIGRLRKKIDPPGNVPLIRTVRGSGYVI 223


>gi|15644795|ref|NP_206965.1| response regulator (ompR) [Helicobacter pylori 26695]
 gi|217031926|ref|ZP_03437428.1| hypothetical protein HPB128_3g45 [Helicobacter pylori B128]
 gi|254778880|ref|YP_003056985.1| Transcriptional regulator [Helicobacter pylori B38]
 gi|308182340|ref|YP_003926467.1| Transcriptional regulator [Helicobacter pylori PeCan4]
 gi|308183962|ref|YP_003928095.1| Transcriptional regulator [Helicobacter pylori SJM180]
 gi|2313252|gb|AAD07234.1| response regulator (ompR) [Helicobacter pylori 26695]
 gi|216946395|gb|EEC25000.1| hypothetical protein HPB128_3g45 [Helicobacter pylori B128]
 gi|254000791|emb|CAX28715.1| Transcriptional regulator [Helicobacter pylori B38]
 gi|261837615|gb|ACX97381.1| response regulator [Helicobacter pylori 51]
 gi|307636855|gb|ADN79305.1| response regulator [Helicobacter pylori 908]
 gi|308059882|gb|ADO01778.1| Transcriptional regulator [Helicobacter pylori SJM180]
 gi|308064525|gb|ADO06417.1| Transcriptional regulator [Helicobacter pylori PeCan4]
 gi|317008837|gb|ADU79417.1| Transcriptional regulator [Helicobacter pylori India7]
 gi|317013584|gb|ADU81020.1| Transcriptional regulator [Helicobacter pylori Gambia94/24]
 gi|317176981|dbj|BAJ54770.1| response regulator [Helicobacter pylori F16]
 gi|317179440|dbj|BAJ57228.1| response regulator [Helicobacter pylori F30]
 gi|317179969|dbj|BAJ57755.1| response regulator [Helicobacter pylori F32]
 gi|325995444|gb|ADZ50849.1| response regulator protein [Helicobacter pylori 2018]
 gi|325997042|gb|ADZ49250.1| response regulator [Helicobacter pylori 2017]
          Length = 225

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R I     +P+I  S    ++  +   D G DD + KP   +E+LAR+ ++ RR  
Sbjct: 61  LEVCRRISKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSH 120

Query: 121 VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +E G   +F    D R+  +  +   L R E  IL  L++ +G   ++  I    
Sbjct: 121 KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESI---- 176

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDW 222
             +  E++        I  +  +LR+K+  +P     + S R +GY +++
Sbjct: 177 -AIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYIISVRGIGYKLEY 225


>gi|90422176|ref|YP_530546.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104190|gb|ABD86227.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 242

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 16/217 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           +  ++DD  L++   ++ F + G ++    + +    L +  R D   ++  L  G G  
Sbjct: 13  VIAIVDDEPLIQSTLVSYFQNAGFAVRSAETADQLRRLMARERIDFILLDIRLPDGDG-- 70

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L L R IRA S VP+I I+        +   + G DD V KP   RE+LARV  + RR 
Sbjct: 71  -LTLMRDIRADSDVPVILITSRAEEADRIIGLELGADDYVTKPFSPREVLARVKTVLRRT 129

Query: 120 KVSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   +      +R F+       + R     GE   L   E  +L  L+ + G+ +++  
Sbjct: 130 RAVADPGRGKRLRRFAGWCLDLENHRLTSASGEPMRLTSAEFELLAALVRHPGRIMSRND 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           +   +      + E +  +  +  L  +LR K+  DP
Sbjct: 190 LLDVM-----SSREWDSNDRTVDVLVGRLRRKIEADP 221


>gi|296282536|ref|ZP_06860534.1| transcriptional activator protein copR [Citromicrobium
           bathyomarinum JL354]
          Length = 227

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 8/152 (5%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +R  +   P++ +S         +  ++G DD + KP    E++ARV A++RR 
Sbjct: 60  LDIIRRLRGSAISTPILMLSALGRTSERAEGLEAGADDYLAKPFEAIELVARVRALHRRA 119

Query: 120 KVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + A    G        R         PL  RE  +  Y M N G+ V +  +   +
Sbjct: 120 SGREHSAVILFGAFECHVKARTAFRDNRHIPLSPREFELFRYFMENAGEVVTREMLLRDV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208
           + + FD   + NVV+ +I +LR+KL    GFD
Sbjct: 180 WNMSFDP--QTNVVDVNIGRLRRKLEE--GFD 207


>gi|300021830|ref|YP_003754441.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523651|gb|ADJ22120.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 234

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 10/168 (5%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R +R  ++   +P+I ++        +    +G DD V KP   +E++AR+ A+ R
Sbjct: 62  IELCRRLRNRTETQNLPIILLTARGEEADRVRGLTTGADDYVTKPFSVQELMARIKALLR 121

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R      ++   +G I V   G     +G  EV   P  E R+LE  M +  + +++ Q+
Sbjct: 122 RAAPERMSDILVSGEI-VMDRGAHKVTRGAREVRLGP-TEYRMLEVFMESPRRVLSRNQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G   E V+E  V+ HI +LRK L      DP+ + R  GY  D
Sbjct: 180 LDRVWGQSSE-VDERTVDVHIGRLRKSLIRGNESDPIRTVRGAGYVFD 226


>gi|325982918|ref|YP_004295320.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325532437|gb|ADZ27158.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 240

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 19/156 (12%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           +P+I ++        +   + G DD V KP   RE++AR+ A+ RRL  + S    E   
Sbjct: 77  IPIIMLTARTQEADKVAGLEIGADDYVTKPFSPRELIARINAVLRRLIPEASAQVVEIHG 136

Query: 131 IRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFD 182
           +R+       +DG + E++     L   E R+L ++M++  +  +++Q+   ++G  +F 
Sbjct: 137 LRLDPVNHRVTDG-NKEIE-----LGPTEYRLLHFMMSHTERTYSRSQLLDRVWGDHVF- 189

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             VEE  V+ HI +LRK L+       + + R  GY
Sbjct: 190 --VEERTVDVHIRRLRKALQWSGKDSWIQTVRGAGY 223


>gi|253568240|ref|ZP_04845651.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|251842313|gb|EES70393.1| two-component system response regulator [Bacteroides sp. 1_1_6]
          Length = 225

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  R+   H +  +I IS   SL+  +   + G DD + KP H  E+ AR+ +
Sbjct: 57  GSGLDLLE--RLKALHKRENVIIISAKDSLEDKVLGLELGADDYLPKPFHLAELNARIKS 114

Query: 115 IYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           + RR        ++  N R E    RVF + ++ E       L R+E  IL Y +   G+
Sbjct: 115 VIRRNQHDGEIDIRQGNVRIEPDKYRVFVNEQELE-------LNRKEYDILLYFINRPGR 167

Query: 167 RVAKTQIFSAIYGLFDEAVEE-NVVESHISKLRKKLRN 203
            V K  +  +++G   + V+  + + + I  LRKKL++
Sbjct: 168 LVNKNTLAESVWGDHIDQVDNFDFIYAQIKNLRKKLKD 205


>gi|288939789|ref|YP_003442029.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288895161|gb|ADC60997.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 225

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 16/159 (10%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
           A  ++P++ +S        ++  ++G DD + KP    E+LARV A+ RR        + 
Sbjct: 69  AGQRLPVLILSARGDWTERVEGIEAGADDYLPKPFRFEELLARVRALIRRAA-----GQP 123

Query: 129 GPIRVFS----DGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            P+ V      D R   +  +  P  L  +E R++ YLM   G+ V++ ++   +Y   D
Sbjct: 124 APVLVHGSFRLDTRRQTLSRDGLPIHLSPQEYRLVSYLMQQAGRVVSQQELTEQLYAQ-D 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + N VE  + ++R+    KLG + + ++R  GY I+
Sbjct: 183 FERDSNAVEVLVGRVRR----KLGAELIQTRRGFGYLIE 217


>gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306836868|ref|ZP_07469824.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227077162|gb|EEI15125.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304567240|gb|EFM42849.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 234

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET--GPIRVFSDGRDPEVQGEVFP 148
           G DD V KP    E++ R+  I RR    + S+N A      + +  D  +    GE+  
Sbjct: 100 GADDYVTKPFSLEEVITRLRVIMRRGGAAEESSNDATMSYADLTLNDDTHEVTKGGELIE 159

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L   E  +L YLM N+   ++K++I   ++  +D   + NVVES+IS LR+K+
Sbjct: 160 LSPTEFNLLRYLMQNKEVVLSKSKILDNVWH-YDFGGDGNVVESYISYLRRKI 211


>gi|188588979|ref|YP_001921296.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
 gi|188499260|gb|ACD52396.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
          Length = 233

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 19/188 (10%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRI--------IRAHSQVPLIGISD 80
           L+ +E    SA +   A+E F   K + V   L +P+I        IR  S VP+I ++ 
Sbjct: 24  LKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGTEVCKEIRKISNVPIIMLTA 83

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-----NR--AETGPIRV 133
                  +   + G DD + KP   RE++ R+  I+RR+  +N     NR         +
Sbjct: 84  KGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVGNANIDTNLNRKLVTFNNFNI 143

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             D  +  +  E   +  +E +IL  L  N G+ +++ +I   ++G +D   +  VV++ 
Sbjct: 144 DLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEILDKVWG-YDYFGDTRVVDTQ 202

Query: 194 ISKLRKKL 201
           I ++RKK+
Sbjct: 203 IKRIRKKI 210


>gi|170701392|ref|ZP_02892352.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170133701|gb|EDT02069.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 277

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 24/210 (11%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-V 73
           Y  +   DG   EG   LE   W          A+   L+  G   LE+ R  RA ++  
Sbjct: 67  YEVVHSADGT--EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMARYT 115

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPI 131
           P+I  S   S    +   + G DD + KP    E++ARV A+ RR+     ++R + G +
Sbjct: 116 PIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRIDAGTL 175

Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            V     DP      V G    L  RE  +L +   + GK  ++  + +A++G   E   
Sbjct: 176 DVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGY- 234

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           E+ V +HI++LR K+      DP +  R L
Sbjct: 235 EHTVNTHINRLRAKVEA----DPAEPVRIL 260


>gi|116622737|ref|YP_824893.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225899|gb|ABJ84608.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 250

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S  P+I ++   S    +   +SG DD + KP    E+LAR+ A+ RR   
Sbjct: 85  EVLRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRTGH 144

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       E+  +R+    R     GE   +   E  ILE L+ + G+ V + ++ + +
Sbjct: 145 TDAAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDELTAVL 204

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           Y       E + ++ HIS LRKKL
Sbjct: 205 YQRPATPYERS-LDVHISHLRKKL 227


>gi|331086452|ref|ZP_08335532.1| hypothetical protein HMPREF0987_01835 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406218|gb|EGG85741.1| hypothetical protein HMPREF0987_01835 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 227

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 12/170 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE VLE    IR    + +I ++   SL   +    SG DD + KP   RE+LAR+    
Sbjct: 62  GEAVLEE---IRKKGNLQVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQL 118

Query: 117 RRLKVSNNRAETGPIRVFSDGRDP---EVQGEVFP-LPRRERRILEYLMANRGKRVAKTQ 172
           R  +    +      R     +      + G++ P + R+E  ILE L+ N  +  +K  
Sbjct: 119 RHTEEKEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKED 178

Query: 173 IFSAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           IF   +   DE    E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 179 IFEYAW---DEPYMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 225


>gi|320107596|ref|YP_004183186.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319926117|gb|ADV83192.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 243

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 106/221 (47%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +         + G S+  F++L  EE ++ + +     I   ++  G    
Sbjct: 15  LLLIDDDQSLASLIAEYCAEAGFSI--FSALSGEEGIRVAKQHSFQMIILDVMLPGIDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + +R  S VP++ ++   +    +   D G DD + KP    E++AR+  I RR   
Sbjct: 73  DVLQRLRQFSTVPVLMLTTRGAAMDRVRGLDGGADDYLAKPFQPEELVARIKTILRRSSP 132

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   ++   G + +    R  + +G V  L   E  +L+ L++  G+ + + ++   I+G
Sbjct: 133 KEMCSKYVVGDLEIDEVARSVKRKGIVLELTGAEFHLLKLLLSQPGEPMPREELIPRIFG 192

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
               +++ + +++ ++ LRKKL  +  G + + S R +GYS
Sbjct: 193 REPGSLDRS-IDNLVNNLRKKLGEHAEGKERIKSIRNVGYS 232


>gi|283781006|ref|YP_003371761.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
 gi|283439459|gb|ADB17901.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
          Length = 223

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R IR      P++ ++   S+   +   +SG DD + KP    E+LAR+ AI RR 
Sbjct: 60  MEVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRT 119

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K   +++ + GP+ +    R          L   E  +LE+LM   G+ V +  +   ++
Sbjct: 120 KDRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               E V  NVVE HI++LR K+        + + R  GY +
Sbjct: 180 ESDWEGV-TNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVL 220


>gi|262199890|ref|YP_003271099.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262083237|gb|ACY19206.1| putative two component transcriptional regulator, winged helix
           family [Haliangium ochraceum DSM 14365]
          Length = 242

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 9/159 (5%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           RA  ++ L+G +   S + T D   +G DD V   +  RE+ AR  A++RRL  S  R  
Sbjct: 86  RATPRLGLLGHAPEGSPRDTEDALAAGFDDFVIGEVGARELAARTRAVFRRLHWSRGRRP 145

Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                GP+ +     +  + G    L   E+ +L  LM   G+ +++ ++    +G    
Sbjct: 146 GRLRFGPLVLHPGDHEVFLHGRSVVLTGIEQSVLRALMQAGGRALSRAELLDQAWGEGSL 205

Query: 184 AVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            V E  V++ I +LR+KL   KL    + + R +G+ +D
Sbjct: 206 EVSERAVDNVILRLRRKLGAGKL----IRTIRGVGFRLD 240


>gi|239626813|ref|ZP_04669844.1| two-component response regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239516959|gb|EEQ56825.1| two-component response regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 243

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 13/121 (10%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ------- 143
           F +G DD ++KP  + E+ ARV A+ RR  +   + E G   +    +D  +Q       
Sbjct: 105 FGAGGDDYLSKPFSYAELAARVKAMIRRYHIYKGKEEDGEESIAV--KDLVIQKSFNEVM 162

Query: 144 ---GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
              GE+  L   E RIL  L +NRGK      I+ +++G        N V  HI  LRKK
Sbjct: 163 KNGGEIL-LTDLEYRILLLLASNRGKLFTIENIYESVWGEAYYYSANNTVMVHIRNLRKK 221

Query: 201 L 201
           L
Sbjct: 222 L 222


>gi|229158690|ref|ZP_04286748.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228624674|gb|EEK81443.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 222

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 59  EICRQIRLVKMTPIIIVTDNISSEDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 117

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 118 CNQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 178 VWG-HNVVVNPNVVDLYIGYVRKKLKCEKKNRYIQTIHGRGYSM 220


>gi|227513674|ref|ZP_03943723.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083085|gb|EEI18397.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 242

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 22/161 (13%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVA 113
           GE+VL+  R+ R  + V ++   D     T  D     + G DD V KP   RE++AR+ 
Sbjct: 60  GEEVLKRIRMDRNDTPVIVLTAKD-----TEFDKVFGLEMGADDYVPKPFSPREVIARIN 114

Query: 114 AIYRRLKVS-----NNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
           A+ RR + S      N A         TGP  +        V  +   L  +E  +++YL
Sbjct: 115 AVLRRYEKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYL 174

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + +  + +++ Q+   ++G FD + +  +V+  I+ LR+K+
Sbjct: 175 VGHENQVLSRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKI 214


>gi|223369872|gb|ACM88804.1| two-component system response regulator [Arthrobacter sp. A3]
          Length = 258

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 22/228 (9%)

Query: 1   MFVLIDDRALVK--------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           + V+ DD AL +        DG+  +F  DG          FE  +  + + D+  ++  
Sbjct: 39  ILVVDDDEALAEMIGIVLRNDGFGPVFCGDGAK-------AFE--VSQANKPDLVLLDLM 89

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L   G   +E+ R+IRA S VP++ ++        +   +SG DD V KP    E++ARV
Sbjct: 90  L--PGMDGIEICRLIRAESDVPIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARV 147

Query: 113 AAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A  R   V        G I +   G      GE   L   E  +L  L     +  ++ 
Sbjct: 148 RARLRPGDVKPPETLVIGEITIDVAGHSIRRAGEKISLTPLEFDLLAALARKPWQVFSRE 207

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
            +   ++G +  A +  +V +H+ +LR K+ R+    + V + R +GY
Sbjct: 208 LLLEQVWG-YRHAADTRLVNAHVQRLRSKIERDPEAPEVVLTVRGVGY 254


>gi|153806271|ref|ZP_01958939.1| hypothetical protein BACCAC_00527 [Bacteroides caccae ATCC 43185]
 gi|149130948|gb|EDM22154.1| hypothetical protein BACCAC_00527 [Bacteroides caccae ATCC 43185]
          Length = 229

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  R+   H +  +I IS   SL+  +   + G DD + KP H  E+ AR+ +
Sbjct: 57  GSGLDLLE--RLKALHKRENVIIISAKDSLEDKVLGLELGADDYLPKPFHLAELNARIKS 114

Query: 115 IYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           + RR        ++  N R E    RVF + ++ E       L R+E  IL Y +   G 
Sbjct: 115 VIRRNQHDGEIDIRQGNVRIEPDKYRVFVNNQELE-------LNRKEYDILLYFINRPGH 167

Query: 167 RVAKTQIFSAIYGLFDEAVEE-NVVESHISKLRKKLRN 203
            V K  +  +++G   + V+  + + + I  LRKKL++
Sbjct: 168 LVNKNTLAESVWGDHIDQVDNFDFIYAQIKNLRKKLKD 205


>gi|86606539|ref|YP_475302.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
 gi|86555081|gb|ABD00039.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
          Length = 251

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           S++P++ ++     Q  ++ F++G DD + KP   +E+L RV A+ RR       A+   
Sbjct: 74  SEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRRADRIPQTAKHGE 133

Query: 129 ----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               GP+ +  +  +    G+   L   E  +L  LM   G+ V+ ++I   ++G ++  
Sbjct: 134 ILTYGPLTLVPERFEAVWFGKTIKLTHLEFDLLHCLMQRHGQTVSPSEILQEVWG-YEPD 192

Query: 185 VEENVVESHISKLRKKL 201
            +   +  HI  LR KL
Sbjct: 193 DDIETIRVHIRHLRTKL 209


>gi|28211768|ref|NP_782712.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28204210|gb|AAO36649.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 261

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 25/176 (14%)

Query: 48  AIEAFLIGKGEKV------LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDS 93
            IEA ++ + E+V      + +PR+        IR   ++P+I +S        +   + 
Sbjct: 39  GIEALMVLEEEEVHLIIMDIMMPRMDGIKATFKIRESKKIPIIMLSAKSEDMDKILGLNI 98

Query: 94  GVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRV-----FSDGRDPEVQGEVF 147
           G DD V KP +  E++ARV +  RR ++  N +     I V       D +   V G+  
Sbjct: 99  GADDYVTKPFNPLELIARVKSQLRRYIRFGNYKENKNAIVVRGLTLNKDAKTAMVDGKEV 158

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEENVVESHISKLRKKL 201
            L   E +IL+ LM N+G+  +   I+ +++    ++    EN V  HI ++R+K+
Sbjct: 159 SLTLTEYKILKLLMENKGRVFSIEHIYESVWQEPFYN---GENTVAVHIRRIREKI 211


>gi|120555970|ref|YP_960321.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325819|gb|ABM20134.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 223

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 31/233 (13%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE---------AF 52
            +L++D A +  G      D G+ +E        ++L S+ R D   ++          +
Sbjct: 3   ILLVEDDAALAQGLAGSLRDAGLLVEVAGEGRTADFLVSTERYDAVVLDLGLPDGNGTQW 62

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L G  E+ ++LP +I          ++           F +G DD V KP    EIL R+
Sbjct: 63  LAGWRERGIDLPVLI----------LTARERWSDKAAGFSAGADDYVTKPFETAEILFRL 112

Query: 113 AAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            A+ RR   S+  A      G I + +        G    L  +E R+L +L+    + V
Sbjct: 113 RALVRR---SHGHAHPVITVGDIALDTHAGHVTRSGMPVSLTAQEFRLLSHLIHAAPRIV 169

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++T++   +Y   D+  + NV++  +S+LR+    KLG   +++ R  GY ++
Sbjct: 170 SRTELSEHVYD-GDQEPDSNVIDVQVSRLRR----KLGAQAIETIRGQGYRMN 217


>gi|319653929|ref|ZP_08008023.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394465|gb|EFV75209.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 238

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--- 122
           +IR  +  P+  ++   +    L  F  G DD + KP +  E+ AR+ A  RR K S   
Sbjct: 69  LIRETTDAPIFFLTARSTDLDKLSGFALGADDYITKPFNPLEVAARIKAHLRRHKGSQPV 128

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + G I++ +   +  V G+   LP +  ++L +L  +  +  +K+Q++  ++G 
Sbjct: 129 PVQTIYDFGRIKINTSAGEVTVSGKRIDLPAQVYQLLLFLSKHPNQLFSKSQLYEHVWG- 187

Query: 181 FDEAV-EENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            +E   E+N V  HI KLR+K+  N      + + R LGY
Sbjct: 188 -EEGFGEDNTVMVHIRKLREKIESNPSSPCHIITVRGLGY 226


>gi|290960148|ref|YP_003491330.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260649674|emb|CBG72789.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 229

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 24/159 (15%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTT--------LDFFDSGVDDVVNKPIHHREILARV 112
           L LP +  + +   L GI+D P +  T        +   ++G DD + KP     + AR+
Sbjct: 48  LGLPDLDGSEALKMLRGITDVPVIIATARDDEAEIVRLLNAGADDYLTKPFSVEHLSARM 107

Query: 113 AAIYRRLKVSNNRAETGP-IRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGK 166
           AA+ RR +     A   P IRV     DP     E+ G    L RRE  +L +L    G 
Sbjct: 108 AAVLRRSRAYAGEAPPSPVIRVGGLAIDPLRRRAELDGVPLDLTRREFDLLAFLAGRPGV 167

Query: 167 RVAK----TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            VA+    T+++   YG      ++  ++ H+S LR+KL
Sbjct: 168 VVARRELLTEVWQQSYG------DDQTIDVHLSWLRRKL 200


>gi|296123001|ref|YP_003630779.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296015341|gb|ADG68580.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 225

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 15/191 (7%)

Query: 39  QSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDD 97
           +++      AI   L+  GE   ++ + +RA   Q P+I ++   S+   +     G DD
Sbjct: 38  ETALSRQADAIVLDLLLPGESGWDVLQKLRAAGVQAPIILLTALGSIDDRVKGLKLGADD 97

Query: 98  VVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            + KP    E++AR+ A+ RR        L+ +    +    RV S+  + E+  ++ P+
Sbjct: 98  YLVKPFDFAELMARLEAVQRRTGNKPSMILQAAGLTLDLTTRRVTSNDTEKEI--DLTPI 155

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
              E  +LE LM   G+ V +  +   ++G F+     NV+E H+++LR KL        
Sbjct: 156 ---EFSLLELLMRYAGQVVTRKMLCEHVWG-FNWDGTTNVIEVHVNRLRGKLDKDRDQSI 211

Query: 210 VDSKRFLGYSI 220
           + + R  GY++
Sbjct: 212 IKTVRGRGYAL 222


>gi|229164064|ref|ZP_04292001.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619447|gb|EEK76336.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 225

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKTTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDY 121

Query: 121 VSNNRAETGPIR-VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  N       + +F D     V+  G+   L +RE  +L +L+ N+   +++  + + +
Sbjct: 122 IQQNEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202
           +G ++  V  NVV+ +I  +RKKL+
Sbjct: 182 WG-YNVVVNPNVVDLYIGYVRKKLK 205


>gi|217419703|ref|ZP_03451209.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|237811008|ref|YP_002895459.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242314295|ref|ZP_04813311.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|217397007|gb|EEC37023.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|237506421|gb|ACQ98739.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242137534|gb|EES23936.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
          Length = 273

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 86  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 144

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q
Sbjct: 145 -----GAGGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQ 199

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 200 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 245


>gi|167751410|ref|ZP_02423537.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702]
 gi|167655656|gb|EDR99785.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702]
          Length = 222

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 6/153 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S  P++ +S     +  L+    G DD + KP     +LA++A I++R + +
Sbjct: 63  VCRKIREESDTPILIVSAKVDKEDKLNGLILGADDYIEKPYDIDIMLAKIAGIFKR-RYA 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +    G IRV    R          +  +E  +L  L+ N+G+ + K  +F+ I+G  D
Sbjct: 122 VDELIDGDIRVNKVSRTVCRNDIPIEMTVKEFELLVLLIENKGRILTKEYLFNQIWG-SD 180

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
              E+  +  HI +LR+K+ +    DP + K  
Sbjct: 181 SFSEQQTLTVHIKRLRQKIED----DPKNPKHI 209


>gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV---------SNNRAETGPIRVFSDGRDPEVQG 144
           G DD + KP   RE++ARV AI RR  V           ++   G + ++ +  +  +  
Sbjct: 96  GADDYLTKPFSPREVVARVRAILRRSAVPKQDKKEEPETSKVILGDVHIYPENYEIFLHD 155

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-N 203
           E   L  +E  +L YL  + G+ + + Q+ +A++  ++   +  +V+ HIS LR+K+  N
Sbjct: 156 EPLELTPKEFELLLYLTNHPGRVLTRDQLLNAVWN-YEFVGDTRIVDVHISHLREKIEPN 214

Query: 204 KLGFDPVDSKRFLGYSID 221
                 + + R LGY ++
Sbjct: 215 TKKPVYIKTVRGLGYKLE 232


>gi|148253267|ref|YP_001237852.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405440|gb|ABQ33946.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 243

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 22/175 (12%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE   +L R IR  S VP++ ++      + ++    G DD V KP   RE+  R+  I 
Sbjct: 76  GESGFDLARFIRTQSSVPIVMLTARAEPDSRIEGLQLGADDYVAKPFEPRELALRIGNIL 135

Query: 117 RRLKVSN-----NRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAK 170
           +R           +   GP  V+   R    QG E+  L  RER +L  L   RG+ V +
Sbjct: 136 KRAAPPPAEEVIEQIAFGPF-VYHLARGELKQGEEIVHLTDREREMLRILANARGETVPR 194

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSI 220
                A+ G  +  V E  V+  I++LR+KL      DP +     + R +GY +
Sbjct: 195 ----GALTG--NGTVNERAVDVQINRLRRKLE----IDPANPLFLQAVRGIGYRL 239


>gi|16264749|ref|NP_437541.1| putative two component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|15140887|emb|CAC49401.1| putative two-component response regulator [Sinorhizobium meliloti
           1021]
          Length = 232

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IRA S VP++ ++        +   + G DD + KP + RE+LAR+ AI RR   
Sbjct: 63  ETCRRIRAVSDVPVLMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRRRNG 122

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S   A T   G + +    R   + G    L   +  +L  L  N G+ +++ Q+  A+ 
Sbjct: 123 SAAVARTLRFGRLEIDPGSRSVRIDGRECTLTSYQFDVLVALAENPGRTLSREQLMDAVK 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           G   +A + + ++ HIS++R  + +    DP   +R +
Sbjct: 183 GEELDAFDRS-IDVHISRIRAAIES----DPKHPRRII 215


>gi|186684336|ref|YP_001867532.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466788|gb|ACC82589.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 250

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 10/148 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R++R     VP++ +S   S    +   + G DD + KP   RE++AR  A+ RR 
Sbjct: 85  LDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRALLRRQ 144

Query: 120 KVSNNRAETGPIRVFSD-GRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++SN      P+  F D   +P+     V+G+   L  +E R+LE  M+   +  ++ Q+
Sbjct: 145 RLSN--LPQLPVLKFKDVTLNPQECRVLVRGQEVSLSPKEFRLLELFMSYARRVWSREQL 202

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G  D   +   V+ HI  LR+KL
Sbjct: 203 LDQVWGP-DFVGDSKTVDVHIRWLREKL 229


>gi|330684068|gb|EGG95823.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU121]
          Length = 236

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 27/221 (12%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           GYI     DG           EE LQ   S++ D+  ++  L  K    +E+ + IR+  
Sbjct: 26  GYIVEVAYDG-----------EEALQKVESSQPDLIVLDVMLPKKDG--IEVCKTIRSDK 72

Query: 72  Q-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRA 126
             VP++ ++        +   + G DD + KP   RE++ARV AI RR +    V +N  
Sbjct: 73  NLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQFVNEVEHNET 132

Query: 127 ETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +   I + S    PE        E+  L  +E  +L YL+  +G+ + +  + ++++  +
Sbjct: 133 DDEDIIIDSIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREHMLNSVWN-Y 191

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 192 EFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|323492751|ref|ZP_08097895.1| transcriptional regulatory protein CpxR [Vibrio brasiliensis LMG
           20546]
 gi|323313126|gb|EGA66246.1| transcriptional regulatory protein CpxR [Vibrio brasiliensis LMG
           20546]
          Length = 221

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 14/168 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R I      P++ ++     ++ LD + SG D  + KP    E+L R+ AI+RR+ 
Sbjct: 61  MQVARKICQRFATPILMLTALNDEESILDGYQSGADQYIAKPFKVPELLTRIKAIFRRVG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT----QIFSA 176
           +   R      RV  D  +        PL   E  +L YL+ N G  V+K     Q+   
Sbjct: 121 LEKQR--QANCRVSQD--NNTFDSSHLPLTGTESDLLGYLIKNEGVVVSKAELQIQVLKK 176

Query: 177 IYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
               FD       ++ HIS LR+K +   L    + + R  GYS   N
Sbjct: 177 ELSPFDRN-----LDMHISNLRRKFVEAGLSKQHIKTVRGKGYSFVAN 219


>gi|302381998|ref|YP_003817821.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192626|gb|ADL00198.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 223

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 9/155 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETG 129
           Q P++ +S    ++  +    +G DD + KP    E++ARV A+ RR +    +   + G
Sbjct: 72  QTPVLFLSAMGEVEDRVVGLKAGGDDYLVKPYAFAELIARVEALSRRRETGGVQTVLKVG 131

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +    R          L  RE ++LE+LM + G+ V +T +   ++   FD   + N
Sbjct: 132 DLEMNLIARTVHRGTSEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVWEYHFDP--QTN 189

Query: 189 VVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
           V++ HIS+LR K+    GFD   + + R  GY ++
Sbjct: 190 VIDVHISRLRSKIDK--GFDRAMLQTVRGAGYRLE 222


>gi|257899652|ref|ZP_05679305.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257837564|gb|EEV62638.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 244

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 21/220 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY      DG           EE L+  A  +   I   L+      LE+ R +R 
Sbjct: 31  LAKEGYDVYTAYDG-----------EEALEKVAEVEPDLILLDLMLPKMDGLEVAREVRK 79

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127
              +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +    E  
Sbjct: 80  TYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATATREPEDA 139

Query: 128 ------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +      +GE   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 140 APAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLLQTVWG-Y 198

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           D   +   V+  + +LR+K+  N    + + ++R +GY +
Sbjct: 199 DYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 238


>gi|226314787|ref|YP_002774683.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097737|dbj|BAH46179.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 226

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 5/143 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I I+        L  F+ G D+ V KP   + ++AR  A+ +R + S
Sbjct: 64  VCRKIRQQSDIPIIIITARVDDDDQLMGFELGADEYVTKPFSPKVLVARAKALMKRAEGS 123

Query: 123 NNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             R    A+ G + V        +      L  +E  +L + + + G  +++  I + ++
Sbjct: 124 IGRGDDIAQFGALTVNKRAHTVTIASVPVSLTPKEYELLLFFIKHEGTVLSRDSILNGVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G+ D   +   V++H+ KLR KL
Sbjct: 184 GM-DYFGDHRTVDTHVKKLRAKL 205


>gi|222080841|ref|YP_002540204.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725520|gb|ACM28609.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 224

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 5/163 (3%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +RA  ++  ++ ++   + +  +   D G DD + KP    E  ARV  + RR 
Sbjct: 60  LDVLRAMRARQNKAAVLILTARGTQEEKVRGLDLGADDYMIKPFDISEFEARVRVLLRRQ 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  +    G + +  + R     G    +P RE  +LE L    G+ VAK  I  ++ 
Sbjct: 120 AGLRASLVAYGNVSLDLNSRTFSANGVPIDIPARELGLLETLFMRAGRVVAKEAIIQSLA 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             FD+ +  N +E ++S+LRK+L    G   V + R +GY +D
Sbjct: 180 A-FDDDLSANAIEQYVSRLRKRLAPH-GL-TVRTARGIGYYLD 219


>gi|154498856|ref|ZP_02037234.1| hypothetical protein BACCAP_02848 [Bacteroides capillosus ATCC
           29799]
 gi|150272114|gb|EDM99329.1| hypothetical protein BACCAP_02848 [Bacteroides capillosus ATCC
           29799]
          Length = 208

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR H   P++ ++        +  F  G DD + KP    E+ ARV A  RR  
Sbjct: 45  LEVCQRIRDHISCPILFLTARIEDADKVKGFAVGGDDYIVKPFSLVELEARVRAHLRREA 104

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N  A+    G + +    R     G+   L ++E  I+E L  N G+   K +I+  I
Sbjct: 105 RHNFEAQIKFAGDLTIDYSERCLFFDGKRLGLAKKEFDIVELLSQNPGQVFDKERIYERI 164

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G +D   + +VV  HI ++R KL
Sbjct: 165 WG-YDSEGDSSVVAEHIRRIRSKL 187


>gi|304408338|ref|ZP_07389985.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342627|gb|EFM08474.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R  S  P+I ++    +   L   +SG DD + KP    E++AR+ AI RR   
Sbjct: 62  EVLREVRNRSTCPVIMLTAKGEIGDRLLGLNSGADDYIIKPFEPVEVIARIQAILRRPSH 121

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +++++ + G +R+    R   + GE   L  ++  +L +L  +  +   + Q+   ++
Sbjct: 122 ALITDHQKQYGSLRIDFKSRSVSLNGETLSLTPKDLALLLFLAEHPNQIFHREQLIERVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G+ D    +  V+  I +LR+ L
Sbjct: 182 GI-DYDGSDRAVDHAIKRLRQSL 203


>gi|303257132|ref|ZP_07343146.1| DNA-binding response regulator VicR [Burkholderiales bacterium
           1_1_47]
 gi|302860623|gb|EFL83700.1| DNA-binding response regulator VicR [Burkholderiales bacterium
           1_1_47]
          Length = 235

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 11/150 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           +R  S VP+I +S        ++ F  G DD V+KP +  E++ R+ A+ RR K      
Sbjct: 71  LRKSSDVPVIILSAKDERPMVIEGFREGADDFVSKPFYIEELMERIRAVLRRGKTRSLVH 130

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G +R+    R   V+  +  L  RE R+L  L+ + G+ +   ++  A++G
Sbjct: 131 APQSQELICGALRLLPGPRQCYVKDALVKLTDREFRLLLELVKHPGEVMTHERLLRAVWG 190

Query: 180 LFDEAVEE-NVVESHISKLRKKLRNKLGFD 208
             DE++ E   +    +++R+KL  + G D
Sbjct: 191 --DESIGEVQYLRVTFARIRRKL-EQCGLD 217


>gi|297155486|gb|ADI05198.1| putative OmpR family two-component response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 223

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 5/144 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE  R +R  S VP+I ++     +  L     G DD + KP    E++AR+ A+ RR  
Sbjct: 58  LEALRRLRRASAVPVIVLTARSEERDVLRGLRGGADDYLVKPFRTAELVARMDAVVRRGT 117

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L  S      G +R+    R  EV G    L RRE  +L  L    G   ++ +I  A
Sbjct: 118 RPLAGSGTVVAVGGVRIDLAARQLEVDGRPVALTRREFDVLALLAREPGVVRSREEILDA 177

Query: 177 IYGLFDEAVEENVVESHISKLRKK 200
           ++G    +   + ++ HI+ +R K
Sbjct: 178 VWGDLLLSASRS-LDVHIAGIRSK 200


>gi|294649454|ref|ZP_06726879.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824659|gb|EFF83437.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 238

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L + R +R H   P++ ++        +   + G DD V KP+  R +LAR+ A+ 
Sbjct: 63  GADGLTVCREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALL 122

Query: 117 RRLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR   +       R E   + + + GR   + GE+      E  +L  L +N G+ +++ 
Sbjct: 123 RRTDKTVEDEVAQRIEFDDLVIDNGGRSVTLHGELVDFTSAEYDLLWLLASNAGRILSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
            IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 183 DIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 221


>gi|304317062|ref|YP_003852207.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778564|gb|ADL69123.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 229

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)

Query: 41  SAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           S + D+  ++  L G  GE   E+   IRA S+VP++ ++        +  F  G DD +
Sbjct: 42  SLKPDLVILDLMLPGLSGE---EICSKIRAISKVPILMLTAKVEEDDKVYGFSIGADDYL 98

Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG------RDPEVQ--GEVFPLPR 151
            KP   RE+  RV AI RR K   +      I  F+DG      R  EV+  GE+  L  
Sbjct: 99  TKPFSPRELTMRVKAILRRTK---DDMALNDIFSFNDGDLVIDTRSYEVKKSGEIVNLTP 155

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            E ++L  +  N  +   + ++   + G +D    +  +++HI  LR+K+ +
Sbjct: 156 NEYKLLTVMAQNPNRVFTRGELIEKVMG-YDFEGFDRTIDAHIKNLRQKIED 206


>gi|172038915|ref|YP_001805416.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700369|gb|ACB53350.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 243

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++      
Sbjct: 71  LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGAPG 130

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+       I++ ++ R      E   L   E  +LE L++  G+  ++++I   ++G
Sbjct: 131 IPSSGVISIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203
              E  V+  VV+ HIS+LR KL +
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215


>gi|170760372|ref|YP_001786057.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407361|gb|ACA55772.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 232

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 21/175 (12%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S+VP++ ++        +   D G DD + KP      ++R+ A+ RR   
Sbjct: 62  DLCKKIRKTSKVPIMFLTAADEETDIIMGLDIGGDDYITKPFKLAVFMSRINALLRR--- 118

Query: 122 SN--NRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           SN  N+A+T    + S+G + ++        GE   L   E ++L   M N    ++  Q
Sbjct: 119 SNNFNQADT---ELNSNGINVQLLKGEVYKNGEQLDLTASEYKLLCLFMENPDIVLSPEQ 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY---SIDW 222
           I S ++   +  ++ N +  +I +LR K+ +  G +P  + + R +GY   ++DW
Sbjct: 176 ILSRLWDCNENYIDNNTLTVYIRRLRTKIEDNPG-EPQKIVTVRCMGYKWSTVDW 229


>gi|160934991|ref|ZP_02082377.1| hypothetical protein CLOLEP_03867 [Clostridium leptum DSM 753]
 gi|156866444|gb|EDO59816.1| hypothetical protein CLOLEP_03867 [Clostridium leptum DSM 753]
          Length = 139

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 9/117 (7%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           G DD + KP   +E+ ARV A+ RR +    V +     GPI V +  R     GE   L
Sbjct: 2   GADDYITKPFSVKELCARVRAVIRRKEYLSPVQDEVLTCGPISVNTAARRCLKNGEPVEL 61

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL--FDEAVEENVVESHISKLRKKLRNK 204
             +E  +L  LM N G+ + +  +   ++GL  F +A     V+ HI  LR+K+ ++
Sbjct: 62  TMKEFDLLVMLMRNAGRVLTRDALLDKVWGLEYFGDA---RTVDVHIRYLRQKIEDE 115


>gi|148238512|ref|YP_001223899.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147847051|emb|CAK22602.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 269

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 22/173 (12%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   + 
Sbjct: 87  RRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRGSA 146

Query: 125 RAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            AE             G + V ++ R      E   L   E  +LE L    G+ V + +
Sbjct: 147 NAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVPRAE 206

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYS 219
           I   ++G     A +  VV+ ++++LR KL      DP + +     R +GYS
Sbjct: 207 ILEQLWGYPPRRAADLRVVDVYVARLRGKLEP----DPRNPELILTVRGIGYS 255


>gi|89902408|ref|YP_524879.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347145|gb|ABD71348.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 243

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 10/188 (5%)

Query: 25  SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84
           + E   + +  E  Q+  R  +  +   L+      L L R +RA S +P++ ++     
Sbjct: 28  NFEAVAARDGREMWQALDRHAIDLVVLDLMLPDTDGLSLCRELRAKSNLPVLMLTALGEE 87

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGPIRVFSDGRDPEV 142
              +   + G DD + KP   RE+LAR+ A+ RR +    N R E+     F+       
Sbjct: 88  TDRIVGIEMGADDYLVKPFSPRELLARIKAVLRRTRALPPNMRPESARCLCFAGWCLDTA 147

Query: 143 Q-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
           +       G   PL   E R+L  L+ +  + + + Q+   I+G   EA  +  ++  +S
Sbjct: 148 ERLLTAPDGVATPLSGGEYRLLHILLDHPNRVLNRDQLTEMIHGREAEAY-DRAIDVQVS 206

Query: 196 KLRKKLRN 203
           +LR++LR+
Sbjct: 207 RLRQRLRD 214


>gi|330810544|ref|YP_004355006.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378652|gb|AEA70002.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 14/167 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IRA SQVP++ ++        +   + G DD V KP    E++AR+ AI RR++
Sbjct: 61  IEVLRRIRAVSQVPVVLLTARGDNIDKITGLELGADDYVPKPSSPGELVARLRAIMRRVQ 120

Query: 121 -VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            V  + +E   TGP+ ++   R    QG    +   E  +LE L    G+ V+K  +   
Sbjct: 121 PVDQSTSEVIRTGPLVLWPGKRQALWQGRELGVTSTEFSLLEELARCAGQVVSKQNLSLN 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
             G      +   ++ HIS     +R+KLG  P     + S R LGY
Sbjct: 181 ALGCPLTRYDRR-IDVHIS----SIRHKLGPRPDAKAWIQSVRGLGY 222


>gi|315646887|ref|ZP_07900002.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277817|gb|EFU41141.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 218

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 2/141 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   I+ H ++P+I ++   S+   +     G DD + KP    E+LAR+  + RR   
Sbjct: 63  ELMSKIQRH-RIPVIFLTAKNSVYDKVTGLKLGADDYMVKPFEAIELLARIETVLRRYGK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   ++V  D R+  +  +   L  +E  +L  L+ N+   +++ Q    ++G  
Sbjct: 122 EESMMQFQDVQVNMDKREVTIHSQPVELTPKEYDLLVVLLKNKNIALSREQFLDKVWG-G 180

Query: 182 DEAVEENVVESHISKLRKKLR 202
           D   E   V+ HI  LRKKL 
Sbjct: 181 DYFGETRTVDMHIKSLRKKLH 201


>gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 236

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 33/223 (14%)

Query: 2   FVLIDDRALVKDG----------YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA 51
            +L++D   ++D           ++   GD   +LE F+   F          D+  ++ 
Sbjct: 8   ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHHF----------DLVILDL 57

Query: 52  FLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
            L    GE+V    R IR +S VP+I ++    ++  +   + G DD + KP   RE++A
Sbjct: 58  MLPRVPGERVC---RAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVA 114

Query: 111 RVAAIYRRLK--VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           RV A+ RR+   V   R   E G + +   G    V G+   L   E ++L  L    G+
Sbjct: 115 RVRALLRRVHSDVEPQREVLEFGELTIDVSGHKVLVSGKEVDLTASEFKLLTTLSRYPGR 174

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             ++ ++   + G +D    E  ++SH+    K LR K+G +P
Sbjct: 175 VYSRMELVEKVLG-YDFEGYERTIDSHV----KNLRAKIGDNP 212


>gi|228995978|ref|ZP_04155634.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003595|ref|ZP_04161411.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757637|gb|EEM06866.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763751|gb|EEM12642.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 230

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR+ S VP+I ++        +     G DD + KP H  E+LAR+ A+ RR   SN   
Sbjct: 67  IRSFSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVLRR---SNQHE 123

Query: 127 ETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           +     +  D       V  +   L   E  +L   + +    +++ Q+   I+GL D  
Sbjct: 124 QLRYKGILWDEAKHFITVYEQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL-DTN 182

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
            E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 183 TEDRTVDSHIRNLRDKLR-KNNF-PIDEHLKTVYGVGYRW 220


>gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 239

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 18/159 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 71  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 130

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ +++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 131 LNQPKVAESKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 189

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL-----RNKL 205
           IF  ++   D+  E  N V  HI  LRKKL     +NKL
Sbjct: 190 IFQHVWA--DDYFEGGNTVMVHIRTLRKKLGEDKRKNKL 226


>gi|218896944|ref|YP_002445355.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218544709|gb|ACK97103.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 68  LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G +D   
Sbjct: 128 IQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG-YDFEG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 187 NERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLE 222


>gi|217962570|ref|YP_002341142.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222098539|ref|YP_002532597.1| response regulator [Bacillus cereus Q1]
 gi|217067771|gb|ACJ82021.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221242598|gb|ACM15308.1| response regulator [Bacillus cereus Q1]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRKIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSN- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-HNVVVNPNVVDLYIGYVRKKLKCEKKNRYIQTIHGRGYSM 223


>gi|241664878|ref|YP_002983238.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|240866905|gb|ACS64566.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 221

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 15/154 (9%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP++ ++   ++   +   D G DD + KP    E+LAR+ A+ RR   + +   T  + 
Sbjct: 73  VPVLILTARDAVDERVRGLDGGADDYILKPFEMVELLARMRAVLRRKGGAASPVLTNGVL 132

Query: 133 VFSDGRDPEVQ------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
                 DP         GE   L  RE  +L+ LM   G  +++T++   IYG   E V 
Sbjct: 133 TL----DPAAHEARMGDGEPVRLSAREFALLQALMLRPGAILSRTELEERIYGWGHE-VA 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            N VE  I  LRK    KLG   + + R +G+ +
Sbjct: 188 SNAVEFLIHALRK----KLGAQAIKNVRGVGWMV 217


>gi|119899090|ref|YP_934303.1| two component system transcriptional regulatory protein [Azoarcus
           sp. BH72]
 gi|119671503|emb|CAL95416.1| two component system transcriptional regulatory protein [Azoarcus
           sp. BH72]
          Length = 226

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 8/159 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ R IR  S VP++ +S        +   D G DD + KP    E+LARV A+ RR  
Sbjct: 62  MEVLRGIREWSHVPVLILSARGEEDDKIRALDEGADDYLAKPFGVGELLARVRALVRRHV 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S+ R   G +      R     GE   L + E R+L  L AN GK +    +   +
Sbjct: 122 KHEDSSGRLNFGEVEADFVRRTVVRNGEAVHLTKIEYRLLTVLAANAGKVLTHNHLMREV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +G     V+ N    ++     +LR KL  DP     FL
Sbjct: 182 WG--PAYVDSN---HYLRIYVGRLRQKLEADPAQPLHFL 215


>gi|116624116|ref|YP_826272.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227278|gb|ABJ85987.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 224

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 2/140 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I ++   +    L+    G DD V KP   RE++ARV A+ RR   
Sbjct: 62  EICRRLRAAGNIPIIMLTARTTEADKLEGLRLGADDYVTKPFSPRELVARVHAVLRRAAP 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +           F  G      GE   L   E ++LE L    G+  +++++   I+G +
Sbjct: 122 APAPRFAAIAIDFERG-TLHRHGEPIALTTTEFKLLETLCRAPGRIFSRSELLERIFG-W 179

Query: 182 DEAVEENVVESHISKLRKKL 201
           D    E  V+ HI+ LR+K+
Sbjct: 180 DYEGTERTVDVHIANLRRKI 199


>gi|110833573|ref|YP_692432.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
 gi|110646684|emb|CAL16160.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
          Length = 240

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 11/169 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L + R +R+  + P++ ++        +   + G DD V KP+  R +LAR+
Sbjct: 60  LMLPGADGLTVCREVRSAYKNPILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARI 119

Query: 113 AAIYRRLKV------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR++       S  R E G + + +  R+  + G+   L   E  +L  L +N G 
Sbjct: 120 RALLRRVETDSERDNSPARLEFGALVIDNSAREVTLAGDSVDLTSAEYDLLWLLASNAGT 179

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
            +++  IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 180 VLSRETIFEKLRGIQYDG-QDRSIDVRISRIRP----KVGDDPENPKRI 223


>gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 240

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 15/141 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVS-----------NNRAETGPIRVFSDGRDPEV 142
           G DD + KP   RE+ ARV AI RR +++           + +   G +++  D  +   
Sbjct: 96  GADDYMTKPFSPREVNARVKAILRRSEIASPSFDGQNDVKDGQLIIGDLKILPDHYEAYF 155

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +     L  +E  +L YL  ++G+ + +  + SA++  +D A +  +V+ HIS LR K+ 
Sbjct: 156 KSNQLELTPKEFELLLYLGKHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIE 214

Query: 203 NKLGFDPVDSK--RFLGYSID 221
                 P+  K  R LGY ++
Sbjct: 215 TNTK-KPIYIKTIRGLGYKLE 234


>gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 231

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 5/153 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNRAE 127
           ++VP++ ++   +    +     G DD V KP    E++AR+  I RR  ++   ++R  
Sbjct: 76  ARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRRTGMAEPESSRLV 135

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              + +  D R+    G    L   E R+L YLM N  + + + Q+   ++  +D   + 
Sbjct: 136 FDDLELDEDTREVTRAGAYVELTATEYRLLRYLMLNPRRVLTRAQLLEHVWS-YDFGGDA 194

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V+E+++S +RKKL +  G   + + R +GY++
Sbjct: 195 RVLETYVSYVRKKL-DAHGPPLIQTVRGVGYAL 226


>gi|302867106|ref|YP_003835743.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302569965|gb|ADL46167.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 238

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 8/118 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFSDGRDPEVQGE 145
            + G DD V KP   RE++ R+ ++ RR     +R  TG +R       +D R  E  G+
Sbjct: 99  LEVGADDYVTKPFSPRELVLRIRSVLRR-AAPQDRGPTGVLRDGDLTADTDRRVAERGGQ 157

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              L  RE  +L +L+AN G+  ++ ++   ++G      +++ V  H+ +LR+K+ +
Sbjct: 158 PLSLTVREFDLLAFLLANPGRAWSRAELLDRVWGW--RFGDQSTVTVHVRRLREKIED 213


>gi|257791167|ref|YP_003181773.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317488100|ref|ZP_07946677.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325832952|ref|ZP_08165625.1| putative response regulator protein GraR [Eggerthella sp. HGA1]
 gi|257475064|gb|ACV55384.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316912808|gb|EFV34340.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325485817|gb|EGC88281.1| putative response regulator protein GraR [Eggerthella sp. HGA1]
          Length = 222

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 7/164 (4%)

Query: 41  SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           +A  D   ++  L G G   +   R +R  SQVP+I ++   S    +   + G DD V 
Sbjct: 43  AAAPDCVILDLKLPGTGGHTV--CRDLRRSSQVPVIMLTSSDSEFDEVLSMNLGADDYVT 100

Query: 101 KPIHHREILARVAAIYRRLKVSN--NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRIL 157
           KP +   +LAR+ ++ RR + +    R E  G +   + GR  E  G    L R E +IL
Sbjct: 101 KPYNPAVLLARIQSVLRRTQRTEPPTRIEHRGVVLDVARGR-VEHGGRSVDLTRNELKIL 159

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             LMAN    +++ ++   ++   D  +++N +  +I++LRK L
Sbjct: 160 HMLMANHDTIISRQELMVELWQ-SDAFIDDNTLTVNINRLRKSL 202


>gi|226315244|ref|YP_002775140.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098194|dbj|BAH46636.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 230

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 103/231 (44%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++ +++  F +   +E L    RED+  I   ++      + 
Sbjct: 7   LVVDDEEEIRDAIEIYLKNESMTV--FKASNGQEALDVLEREDIQLILMDIMMPKMDGMT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFQIRQKKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRFTNL 124

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++ +  +   + +    ++  + G    L   E +ILE LM N+G+  +  +I+  
Sbjct: 125 GSAQITEDEIQVRGLTLNKSTKNVAIDGNEVRLTATEYKILELLMENKGRVFSIEEIYER 184

Query: 177 IY-GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
           ++   +  A  EN V  H+    +++R K+  +P + K       +GY I+
Sbjct: 185 VWREPYMNA--ENTVAVHV----RRIREKIEINPKEPKYLKVVWGIGYKIE 229


>gi|188996301|ref|YP_001930552.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931368|gb|ACD65998.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 220

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 23  GVSLEGF------NSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPL 75
           G+  EGF      N    EE+L +   E V  ++  L  K G  +LE  R        P+
Sbjct: 19  GLEEEGFLVDLVSNGATAEEYLNTENYE-VIVLDLMLPEKDGLSILESLR--NRGICTPV 75

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVF 134
           + ++   S++  +   ++G DD + KP   +E++AR+ A+ RR   VS      G + V 
Sbjct: 76  LILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYHNVSKGMVSFGDVEVD 135

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
              ++ +V+G+   L   E ++L  L     + ++KT I  ++YG ++ + + NV+E  I
Sbjct: 136 LVNQNVKVKGKDVELTAMELKLLMMLALKSNRILSKTYIEQSLYG-WEGSPDSNVIEVLI 194

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGY 218
           S+LRKKL  K  +  + + + LGY
Sbjct: 195 SRLRKKLDPKGKY--IKTVKGLGY 216


>gi|220929311|ref|YP_002506220.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999639|gb|ACL76240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 228

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 4/143 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR  S +P+I ++        +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRKVSSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRRYEY 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V         + +        ++G +  LP +E  +L +L +N  K   + Q+   ++
Sbjct: 125 KEVDTQEVAFPNLIINKSNYTIRLKGNLIELPPKELELLFFLASNPNKVFTREQLLERVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G FD   +   V+ H+ ++R+K+
Sbjct: 185 G-FDFYGDSRTVDVHVKRVREKI 206


>gi|170728288|ref|YP_001762314.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813635|gb|ACA88219.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 221

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 5/158 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S+VP++  +        L   + G DD + KP   +E++AR+  I RR+  
Sbjct: 63  ELCKQIREFSEVPVLMATAKVEEIDRLLGLEIGADDYICKPFSPKEVMARIKTILRRVP- 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +A     ++    +  ++Q    PL   E RIL    +       + Q+ + +Y  +
Sbjct: 122 --TKAPDSLFQLDVVSQRAKLQNIELPLTPVEFRILHAFTSKPDNVWNREQLLNKMYDDY 179

Query: 182 DEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGY 218
            E V +  V+SH++ LRKK L ++L  D + S   +GY
Sbjct: 180 RE-VSDRTVDSHVANLRKKLLASQLKHDFIGSVYGVGY 216


>gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 233

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 22/221 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R+L  +GY  +  +DGV           + L+   RE    +   ++      LE+ R +
Sbjct: 18  RSLTFNGYNVVTAEDGV-----------QALEVIEREHPEIVILDVMMPRMDGLEVCRTL 66

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125
           R+      ++ ++   ++   +   D+G DD + KP    E+LARV ++ RR  V SNN 
Sbjct: 67  RSQGDDRSILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLVRRSAVESNNN 126

Query: 126 AET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           A +        G + +  + RD         L R E  +LE LM N  K + +  I   +
Sbjct: 127 AASNRQTELTFGDLTLNPETRDVSRAVRPISLTRTEFALLELLMKNPRKVLPRNTILEEV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G +D     N +E +I  LR+K   +     + + R +GY
Sbjct: 187 WG-YDFPTSGNALEVYIGYLRRKTEQEGESRVIYTVRGVGY 226


>gi|163942589|ref|YP_001647473.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229014060|ref|ZP_04171184.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229169596|ref|ZP_04297299.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|163864786|gb|ABY45845.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228613871|gb|EEK70993.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228747316|gb|EEL97195.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 232

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 15/151 (9%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRGKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++  E G + +  + R   V GE   L  +E  IL Y++A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALEIGGVAIDPERRTVNVYGEPIELTPKEFDIL-YVLASHPKKVYSVEN 182

Query: 173 IFSAIY--GLFDEAVEENVVESHISKLRKKL 201
           IF  ++  G ++     N V  HI  LRKKL
Sbjct: 183 IFQQVWAEGYYESG---NTVMVHIRTLRKKL 210


>gi|329939486|ref|ZP_08288822.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301715|gb|EGG45609.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 233

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 31/226 (13%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL +DG+      DG+S LE F S           R D++ ++  +   G   + L R I
Sbjct: 23  ALERDGFAVTAMPDGLSGLESFRS----------RRPDIALLDVMV--PGLDGVSLCRRI 70

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126
           R  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR       R 
Sbjct: 71  RDESNVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHAGGMRG 130

Query: 127 ET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           E             G + V + G +    G    L   E R+L    A  G  +++ ++ 
Sbjct: 131 EEDDPAAEGGVLTFGELEVDTGGMEVRRSGRPVSLTPTEMRLLLEFSAVPGTVLSRDKLL 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +    +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 191 ERVWD-YGWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 231


>gi|293572888|ref|ZP_06683838.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|291607016|gb|EFF36388.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
          Length = 222

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F  G DD + KPI   E++ RV A+ RR K++ ++    G  ++  D            L
Sbjct: 92  FKLGADDYMTKPIDVNEMILRVEALLRRSKINYSSSLMIGQTKLELDTYTVLQDQHSLIL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P++E  +L  L++   K   + Q+   I+GL D   EE  ++ HI +LR +      F  
Sbjct: 152 PQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL-DTNTEERTIDVHIKRLRTRFEKTEDFQ- 209

Query: 210 VDSKRFLGY 218
           + + R LGY
Sbjct: 210 IMTVRGLGY 218


>gi|290474125|ref|YP_003467002.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289173435|emb|CBJ80212.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 221

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 16/157 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I +S   + Q  +   DSG DD ++KP    E+LARV    RR   +N   
Sbjct: 63  IRQWSSIPIIVLSARNNEQDKVAALDSGADDYLSKPFGINELLARVRVALRRATKAN--- 119

Query: 127 ETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  P+  F+D        R  + Q E+   P  E R+L  L+ N GK + +  + + ++G
Sbjct: 120 QPDPMIHFADISVDLINRRVLKSQKELHLTP-TEYRLLTELLTNSGKVLTQRYLLNHVWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
                +E N    ++      LR KL  DP   K  L
Sbjct: 179 --PHYIEHN---HYLRIYMGHLRQKLEEDPARPKHLL 210


>gi|302879639|ref|YP_003848203.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302582428|gb|ADL56439.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 228

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 16/167 (9%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R    +P++ +S   +    +   D+G DD + KP +  E+LARV A  RR    + 
Sbjct: 67  RDLRTQFSLPVLVLSARSAEGEKIRALDAGADDYLTKPYYTGELLARVRAQLRRAPQESA 126

Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            AET    G I V    R    +G    L   E R+L  ++   GK +    + SA++G 
Sbjct: 127 TAETHVHFGDIEVNLAQRSVTRKGLAVRLTPIEFRLLCAMLVEPGKVLTYRHLLSAVWG- 185

Query: 181 FDEAVEEN-VVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
               VE N  +  ++S LR+KL      DP   + F     +GY +D
Sbjct: 186 -KAFVESNHYLRIYVSHLRQKLEE----DPAQPRFFVTETGVGYRLD 227


>gi|251778440|ref|ZP_04821360.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082755|gb|EES48645.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 223

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 94/200 (47%), Gaps = 14/200 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+KDG+      DG           EE L   ++E +  I   ++      LE+   +R 
Sbjct: 22  LLKDGFNIFEASDG-----------EEGLFQFSKEKIDLIILDIMMPKMNGLEMLEKLRE 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAE 127
            S VP+I ++     +  L+ ++ G DD + KP   + ++A+V A+ +R +  + ++   
Sbjct: 71  VSNVPVIFLTAKGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKRTREDLDSSIQN 130

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              + V     + +V   +  L  +E  +L YL+ N    +++  I   ++G+ D   + 
Sbjct: 131 FNGLSVNQLSHEVKVNDNIILLSPKEYELLIYLINNESIALSRDNILDNVWGI-DYYGDI 189

Query: 188 NVVESHISKLRKKLRNKLGF 207
             V+++I +LR+KL +K  +
Sbjct: 190 RTVDTNIKRLREKLLDKSAY 209


>gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 232

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ N++    G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAENKSALAIGGVVIDPEQRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQHVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|182440678|ref|YP_001828397.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178469194|dbj|BAG23714.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 224

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 12/182 (6%)

Query: 28  GFNSLEFEEWLQSSAREDVSAIEAF----LIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           GF      +W ++     +SA +      ++  G+ +  L    RA   VP++ ++   S
Sbjct: 24  GFAVDCASDWPEADVLLHLSAYDCVVLDRMVPSGDTLAPLEGRRRAGWSVPVLCLTALDS 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPE 141
           L   L   +SG DD + KP   RE++ RV  + RR   ++ R  +  G   V  D    E
Sbjct: 84  LDERLRGLESGADDYLAKPFSMRELVLRVRGLSRR---ASARLPSFLGCADVVMDVARHE 140

Query: 142 VQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
           V+  G +  L  +E  +L+ L+ +R   V +T +    +    + V  NVV++ ++ LR+
Sbjct: 141 VRRGGVLLSLSPKEYAVLQQLLVHRDTVVTRTGLLEHCWDEMADPV-SNVVDAVVAGLRR 199

Query: 200 KL 201
           KL
Sbjct: 200 KL 201


>gi|238563602|ref|ZP_00438600.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|251766703|ref|ZP_02264739.2| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254208757|ref|ZP_04915105.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|147750633|gb|EDK57702.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|238520363|gb|EEP83824.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|243064967|gb|EES47153.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 273

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 86  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 144

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q
Sbjct: 145 -----GAGGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQ 199

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 200 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 245


>gi|78059924|ref|YP_366499.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77964474|gb|ABB05855.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 277

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 22/198 (11%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQ 85
           EG   LE   W          A+   L+  G   LE+ R  RA ++  P+I  S   S  
Sbjct: 77  EGLRLLEQGGW---------DALILDLMLPGVDGLEICRRARAMTRYTPIIITSARSSEV 127

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDP--- 140
             +   + G DD + KP    E++ARV A+ RR+     ++R + G + V     DP   
Sbjct: 128 HRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRIDAGTLDVAGLAIDPIAR 187

Query: 141 --EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
              V G    L  RE  +L +   + GK  ++  + +A++G   E   E+ V +HI++LR
Sbjct: 188 EASVDGARIDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLR 246

Query: 199 KKLRNKLGFDPVDSKRFL 216
            K+      DP +  R L
Sbjct: 247 AKIEA----DPAEPVRIL 260


>gi|30265287|ref|NP_847664.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530822|ref|YP_022171.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188099|ref|YP_031352.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65317232|ref|ZP_00390191.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869866|ref|ZP_02214523.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167641807|ref|ZP_02400048.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170708959|ref|ZP_02899391.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177654055|ref|ZP_02936065.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567646|ref|ZP_03020558.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227818024|ref|YP_002818033.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601800|ref|YP_002869478.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254735190|ref|ZP_05192899.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254755698|ref|ZP_05207731.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759571|ref|ZP_05211596.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259965|gb|AAP29150.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505970|gb|AAT34646.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182026|gb|AAT57402.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714189|gb|EDR19709.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510219|gb|EDR85624.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170126124|gb|EDS95019.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172080938|gb|EDT66017.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561062|gb|EDV15035.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006593|gb|ACP16336.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229266208|gb|ACQ47845.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R+ R   + +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E G I +    R   V  +   L  RE  + +  ++N  +   + ++  
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+       V+  + +LRKKL N   +  + +   +GY +D
Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222


>gi|332529112|ref|ZP_08405076.1| two component response regulator protein [Hylemonella gracilis ATCC
           19624]
 gi|332041335|gb|EGI77697.1| two component response regulator protein [Hylemonella gracilis ATCC
           19624]
          Length = 221

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 10/165 (6%)

Query: 61  LELPRIIRAHS----QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           + L R +RA S     +P++  +   +++  +   ++G DD V KP    E++ARV A+ 
Sbjct: 60  MSLLRNLRARSSELAHLPVLIATARDAVEDRIRGLNAGADDYVLKPFDLDELIARVRALL 119

Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    S    + G + + +  R+ ++ G+   L  RE  +LE LM + G  +++ Q+  
Sbjct: 120 RRRGGGSTPLIQCGQLTLDTVRREVQLDGQDIALSGREYALLEALMQSPGAVLSREQLED 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +IYG +++ +  N VE H+  LR+    KLG D + + R +GY +
Sbjct: 180 SIYG-WNQEIGSNAVEVHLHHLRR----KLGADRIRNVRGVGYKV 219


>gi|325262726|ref|ZP_08129462.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324031820|gb|EGB93099.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 224

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
           IR  S VPL+ +S        +    +G DD V KP     +L ++ A+ RR     ++ 
Sbjct: 69  IRQISNVPLLYLSSRDQNADKVMAMAAGGDDYVEKPFDPELLLLKIRAMLRRAYEYTTSE 128

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           R        + +G+     G    L + E +I+  L+A RG  V++ ++   ++   DE 
Sbjct: 129 RTYLNGGMYYENGQ-FACGGHTVDLTKSESKIMAALLARRGNVVSREKLMQQLWNT-DEF 186

Query: 185 VEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           V +  +   IS+LR KL +   G D + +K+ +GY I+
Sbjct: 187 VTDASLSVLISRLRSKLNDVTGGSDIIVTKKGMGYYIE 224


>gi|294339915|emb|CAZ88278.1| Transcriptional activator protein czcR [Thiomonas sp. 3As]
          Length = 242

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 17/217 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           R L ++G+IA      V+++G + L     L  +   D+  ++A L G+ G  VL     
Sbjct: 35  RGLGENGFIA-----DVAVDGTDGLH----LALTQPYDLIVLDAMLPGRDGWSVLS---E 82

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           +RA    P++ ++    +   +   + G DD + KP    E+LARV ++ RR +      
Sbjct: 83  LRARQTTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGVTRLPEV 142

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
            E   +RV    +  E  G+   L  +E  +L  L    G+ +++T I   ++ + FD  
Sbjct: 143 MEVADLRVDMHRQRAERGGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWDMNFDS- 201

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + NVV+ HI +LR KL        + + R +GY ++
Sbjct: 202 -DTNVVDVHIRRLRSKLDEPFPAPLLHTVRGVGYVLE 237


>gi|262374891|ref|ZP_06068125.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262309904|gb|EEY91033.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 228

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S +P+I ++        +   + G DD + KP   +E++ARV A+ RRL 
Sbjct: 61  LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYLCKPFSPKELVARVQAVLRRLD 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179
             +        R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I   
Sbjct: 121 RKSEPESNDLFRMDKSQQRIWYQQKALNLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
            FD  V + V++SHI  LR+K+ +
Sbjct: 181 SFD--VADRVIDSHIKNLRRKISD 202


>gi|225017640|ref|ZP_03706832.1| hypothetical protein CLOSTMETH_01569 [Clostridium methylpentosum
           DSM 5476]
 gi|224949605|gb|EEG30814.1| hypothetical protein CLOSTMETH_01569 [Clostridium methylpentosum
           DSM 5476]
          Length = 221

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 13/147 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++   S    L   + G DD + KP + + +LAR+ ++  R   
Sbjct: 62  HICRELRKVSDLPIIIVTSRDSDVDELMSMNLGADDFITKPYNTQILLARINSVLNR--A 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP-------LPRRERRILEYLMANRGKRVAKTQIF 174
            NNR+      V  +G   ++   +         L + E RIL  LM N G  +++ ++ 
Sbjct: 120 YNNRSAKV---VSHNGVSLDLATSIVSNRERQAELTKNELRILHLLMTNSGSILSRDELM 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
           + ++   DE V++N +  +I++LRKKL
Sbjct: 177 NDLWQ-SDEFVDDNTLTVNINRLRKKL 202


>gi|254524591|ref|ZP_05136646.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
 gi|219722182|gb|EED40707.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
          Length = 219

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 77/149 (51%), Gaps = 8/149 (5%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132
           P++ ++        L  FD+G DD + KP    E++ R+ A+ RR    ++ R + GP++
Sbjct: 74  PVLVLTARGRWHDKLAGFDAGADDYLTKPFQADELVLRLRALIRRSHGHASPRLQCGPLQ 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAVEENVVE 191
           +  +    E+ G+   L  +E R+L Y + + G  +++ ++   ++ G +D   + N ++
Sbjct: 134 LDVNAGRFELDGQALALSPQEFRVLSYFIHHSGSVISRDRLGEQVFEGGYDP--DSNALD 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + ++R+    KLG D + + R  G+ +
Sbjct: 192 VLLGRVRR----KLGTDLIHTVRGQGWRL 216


>gi|145593184|ref|YP_001157481.1| two component transcriptional regulator [Salinispora tropica
           CNB-440]
 gi|145302521|gb|ABP53103.1| two component transcriptional regulator, winged helix family
           [Salinispora tropica CNB-440]
          Length = 240

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 41  SAREDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           +ARED   +    L+  G   +E+ R +RA S   +I ++        L     G DD +
Sbjct: 51  AAREDEPDVVVLDLMLPGLDGVEVCRRLRAFSDCYVIMLTARTEETDKLTGLGVGADDYL 110

Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRER 154
            KP   RE++ARVAA+ RR +    R E      GP+ V    R+  +     PL R E 
Sbjct: 111 TKPFSPRELVARVAAMRRRPRQPRIRPEPALRRFGPLEVDVPAREARLDEVPVPLTRTEF 170

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201
            +L  L       +++ Q+ +A++G  D  V +E +V+ HI  LR+KL
Sbjct: 171 DLLAVLSGRPNVALSRAQLITAVWG--DGWVGDERLVDVHIGHLRRKL 216


>gi|73661330|ref|YP_300111.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123761572|sp|Q4A160|WALR_STAS1 RecName: Full=Transcriptional regulatory protein walR
 gi|72493845|dbj|BAE17166.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 233

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 82/175 (46%), Gaps = 18/175 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +E+ R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  
Sbjct: 58  GRDGMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 117 RR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           RR        +  ++N      I ++ D    + +G+   L  RE  +  YL  + G+ +
Sbjct: 118 RRHYSQPAQEVNDASNEITIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVM 177

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            +  +   ++G +D   +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 178 TREHLLQTVWG-YDYFGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227


>gi|163942268|ref|YP_001647152.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864465|gb|ABY45524.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 230

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S +P++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAIPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S   ++   I++     DP     E +G    L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + ++   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|330823313|ref|YP_004386616.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|329308685|gb|AEB83100.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 236

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R  RA +  VP+I  S   S    +   + G DD + KP    E++AR
Sbjct: 56  LMLPGVDGLEICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVAR 115

Query: 112 VAAIYRRLK--VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164
           V A+ RR +    N + E G + +     DP      V G+   L  RE  +L +     
Sbjct: 116 VRALLRRSEALARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQP 175

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           GK  ++  + + ++G   +   E+ V +HI++LR K+      +P D KR L
Sbjct: 176 GKVFSRLDLLNQVWGYRHDGY-EHTVNTHINRLRIKIER----NPADPKRIL 222


>gi|329923723|ref|ZP_08279118.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328941089|gb|EGG37391.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 237

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 21/207 (10%)

Query: 25  SLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           +L  F+ L   E L+S  R D++  +  + +  G ++L   R IR   ++P+I +S    
Sbjct: 29  TLAAFDGLAALEHLRSQ-RVDLALFDIMMPVIDGFQLL---RTIRQDYKIPVILVSAKNQ 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DG 137
               +     G DD V+KP    E++AR+ A  RR    N  +E  P+ V        D 
Sbjct: 85  ELDKITGLKLGADDYVSKPFSPMEVMARIQAQLRRSYEFNEPSEPDPVSVTRIGDLVLDH 144

Query: 138 RDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE--AVEENVVESH 193
           R+    ++G+   L   E ++L   M   G+   K Q+F   +   DE    ++N V   
Sbjct: 145 REYMLYIKGKPISLSAIEYKLLNLFMGEPGRVFTKRQMFEHAW---DELYLADDNAVMVQ 201

Query: 194 ISKLRKKLRNKLGFDPVDSK--RFLGY 218
           IS+LR K+ N    +PV  K  R LGY
Sbjct: 202 ISRLRDKIENN-PRNPVYIKTIRGLGY 227


>gi|319764977|ref|YP_004128914.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330827171|ref|YP_004390474.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317119538|gb|ADV02027.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329312543|gb|AEB86958.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 96/188 (51%), Gaps = 10/188 (5%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDS 93
           +Q+    DV + +A ++  G   L+   ++R    A   +P++ ++   S Q  +   D+
Sbjct: 34  VQAHYLGDVESFDAVVLDLGLPQLDGLSVLRRWRAAGRNMPVLILTARGSWQEKVAGMDA 93

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD + KP H  E+LAR+ A+ RR+ + ++ + + GPI + +      V G    L   
Sbjct: 94  GADDYLAKPFHMEELLARLRALLRRVGEHASAQWQCGPIWLDTRQARVLVDGRPLTLTSH 153

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E ++L  LM  +G+ +++T++   IY   D   + N +E  + +LRKKL        +++
Sbjct: 154 EFKLLSLLMQRKGEVLSRTELAEHIYPQ-DSERDSNTIEVFVGRLRKKLPEGC----IET 208

Query: 213 KRFLGYSI 220
            R LGY +
Sbjct: 209 VRGLGYRL 216


>gi|295107994|emb|CBL21947.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 233

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 8/149 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR +S VP+I +S        +   + G DD + KP   +E++ARV A+ RR KV
Sbjct: 65  QVCREIRHNSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124

Query: 122 ------SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  + P + +          G    +P +E  +L +L A+  +   + Q+ 
Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
             I+G ++   +   V+ HI +LR+K+++
Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKD 212


>gi|260752408|ref|YP_003225301.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551771|gb|ACV74717.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 231

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 8/172 (4%)

Query: 56  KGEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +G   +E+ R +R +   + +P+I ++        +   ++G DD V KP   RE++ARV
Sbjct: 58  EGTSGIEVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARV 117

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAK 170
            A+ RR++ + ++ +     +  D     V+  G    +   E R+L +LM    +  ++
Sbjct: 118 LAVLRRIRPALSKEQLTYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSR 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
            ++   I+G  D  +E   V+ HI +LRK L N+ G  D + + R  GY++D
Sbjct: 178 EKLLDYIWGQ-DSDIELRTVDVHIRRLRKAL-NRDGLPDLIRTVRSAGYALD 227


>gi|257900011|ref|ZP_05679664.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257837923|gb|EEV62997.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 222

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F  G DD + KPI   E++ RV A+ RR K++ ++    G  ++  D            L
Sbjct: 92  FKLGADDYMTKPIDVNEMILRVEALLRRSKINYSSSLMIGQTKLELDTYTVLQDQHSLIL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P++E  +L  L++   K   + Q+   I+GL D   EE  ++ HI +LR +      F  
Sbjct: 152 PQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL-DTNTEERTIDVHIKRLRTRFEKTEDFQ- 209

Query: 210 VDSKRFLGY 218
           + + R LGY
Sbjct: 210 IMTVRGLGY 218


>gi|255526457|ref|ZP_05393368.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296184830|ref|ZP_06853241.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509839|gb|EET86168.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050612|gb|EFG90035.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 6/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR   + P+I I+   + Q  +     G DD + KP +  E++ARV A  RR K
Sbjct: 61  LNICKSIRTKYKYPIIMITAKTADQDKIIGLTYGADDYITKPFNPLEVMARVKAQLRRYK 120

Query: 121 -VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               N  E   I      +    R   + G+   L   E  +LE L+ NRG+ ++  ++F
Sbjct: 121 EYGENTKEDSTIYYKGLILDRKSRQANLNGKELKLTPTEFNLLEILLLNRGQVLSGEKLF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             +      +   N V  HI  LR+K+
Sbjct: 181 HLLREDEYYSKSTNTVTVHIRNLREKM 207


>gi|284040223|ref|YP_003390153.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819516|gb|ADB41354.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 236

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 16/148 (10%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129
           H  VP+I ++     + T+  F +G DD + KP    E+L R+ AI RR + S   AE  
Sbjct: 71  HRDVPIIFLTAKSMQEDTIQGFKAGADDYMTKPFSMEELLLRIQAILRRYQRSTESAEPT 130

Query: 130 PIRVFSDGRDPEVQ-------------GEVFP--LPRRERRILEYLMANRGKRVAKTQIF 174
             R+ S   D   Q              E+ P  L  +E  +L+ L  N  + V+++   
Sbjct: 131 TYRIGSFSFDYPHQLLSRTADNASLNDQELAPQKLTSKESELLKLLAQNLNQPVSRSFAL 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR 202
             ++G  D       ++ +++KLRK LR
Sbjct: 191 KMVWG-DDSYFNARSMDVYVTKLRKYLR 217


>gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
 gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
          Length = 223

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 16/207 (7%)

Query: 19  FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQV-PLI 76
           FG DG   +G  +L++ +    S   DV  ++  + G  G  VL   R +R+     P++
Sbjct: 25  FGVDGCR-DGREALDYLD----STDYDVVILDIMMPGIDGLTVL---RTLRSRGNTAPVM 76

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS- 135
            ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   S+N+ +T  +   + 
Sbjct: 77  LLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR--NSDNKTDTASVADLTV 134

Query: 136 --DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
               R     G    L  RE  +LE L+ ++G  +++TQ+ + ++    E    N+V+ +
Sbjct: 135 EFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWDFGFEG-GSNIVDVY 193

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  LRKK+ +      + + R  GY++
Sbjct: 194 IRYLRKKIDDPFEKKLIHTVRGAGYTL 220


>gi|206976678|ref|ZP_03237583.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206745164|gb|EDZ56566.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRKIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSN- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-HNVVVNPNVVDLYIGYVRKKLKCEKKNRYIQTIHGRGYSM 223


>gi|189424148|ref|YP_001951325.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189420407|gb|ACD94805.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 239

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 17/160 (10%)

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           KGE    L R +R  S++P+I ++    L   +   + G DD + KP + RE+LARV A+
Sbjct: 56  KGEDGFSLCRRLRMVSKIPVIILTAMGDLTDRIVGLEIGADDYLTKPFNARELLARVKAV 115

Query: 116 YRRLKVSNNRAETGPIR-----VFSDG--------RDPEVQGEVF-PLPRRERRILEYLM 161
            RR   S  +A   P+      VFS G        R+      VF PL   E  +L   +
Sbjct: 116 LRR--TSEAQASPEPVSTATRPVFSFGAWRLDVAKRELRSDTNVFIPLSGGEFDLLLAFV 173

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +  + +++ Q+     G+  +A + + +++ +S+LR+KL
Sbjct: 174 EHPQRVLSREQLLDWTGGINHDAYDRS-IDTQVSRLRRKL 212


>gi|70732373|ref|YP_262129.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346672|gb|AAY94278.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 17/217 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L + GY      DGV           E L  +   D + I   ++  G     + R +
Sbjct: 18  RGLTEQGYTVDLARDGV-----------EGLHMALEGDYAVIVLDVMLPGLDGFGVLRAL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR    +   +
Sbjct: 67  RARKQTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRR-SGGHEPVQ 125

Query: 128 TGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
                ++ D   R     G    L  +E  +L  L   +G+ ++KT I   ++ + FD  
Sbjct: 126 ISIADLWIDLISRKASRAGSRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDINFDS- 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + NVVE  I +LR KL        + + R +GY ++
Sbjct: 185 -DANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLE 220


>gi|306821438|ref|ZP_07455042.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550513|gb|EFM38500.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 147

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D G DD + KP   +E+LAR+ +I RR  +V  N    G + +  D    +   +   L
Sbjct: 15  LDFGADDYMTKPFETKELLARLRSITRRKGEVVLNELSFGDLSLDLDSNQIKSSTKSIQL 74

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E  I+  LM +      K  I   ++G+  +A + N VE +IS LRKKL+       
Sbjct: 75  GYKEFEIMRMLMTHPQIISTKEDIIVKVWGIDSDAADNN-VEVYISFLRKKLQFLKSKVV 133

Query: 210 VDSKRFLGYSIDW 222
           + + R +GY +D+
Sbjct: 134 IQTIRKVGYKLDF 146


>gi|269104461|ref|ZP_06157157.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161101|gb|EEZ39598.1| transcriptional regulator [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 219

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 18/156 (11%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I ++   S+   +   DSG  D + KP    E+LAR+     R+ + +N A+  P  
Sbjct: 72  LPVIMLTAMVSITDKVVGLDSGASDYLTKPFAVEELLARI-----RVHLRSNGADAEPSN 126

Query: 133 VFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           + +        D R+     E   L R E  +L +L  N G+   + ++   ++G ++  
Sbjct: 127 IITAGQIEINLDSREVRHGDEFITLTRTEFELLVFLAKNAGRVFTRDELLDQVWG-YNHY 185

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                V++HI +LR+KL   +G + +++ R +GY +
Sbjct: 186 PTTRTVDTHILQLRQKL---VGIE-IETLRGVGYRM 217


>gi|258511695|ref|YP_003185129.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478421|gb|ACV58740.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 233

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 11/143 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR HS VP++ ++        +  F+ G DD V KP   RE++ RV A+ +R   ++ + 
Sbjct: 69  IRQHSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGEMEYAR 128

Query: 124 NRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI--Y 178
           N  +T     + +  D R  EV G+   L  +E  +L Y+     K  ++ ++   +  Y
Sbjct: 129 NAIQTLTFPGLEIQIDARRVEVNGQEVNLTPKEFDLLVYMAQRPDKVFSREELLRDVWNY 188

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
             F    ++  V++HI +LR+KL
Sbjct: 189 QFFG---DQRTVDTHIKRLREKL 208


>gi|206970599|ref|ZP_03231551.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228952360|ref|ZP_04114448.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228964973|ref|ZP_04126075.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229043749|ref|ZP_04191451.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229069533|ref|ZP_04202822.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229079163|ref|ZP_04211712.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229109448|ref|ZP_04239042.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229178389|ref|ZP_04305758.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229190087|ref|ZP_04317093.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|206734235|gb|EDZ51405.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228593416|gb|EEK51229.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228605119|gb|EEK62571.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228674015|gb|EEL29265.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228704180|gb|EEL56617.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228713672|gb|EEL65558.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228725602|gb|EEL76857.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228794714|gb|EEM42218.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228807356|gb|EEM53887.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 228

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 71  LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G +D   
Sbjct: 131 IQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG-YDFEG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 190 NERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLE 225


>gi|167031851|ref|YP_001667082.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166858339|gb|ABY96746.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 224

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR   S+ 
Sbjct: 64  RALRARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRR-SSSHE 122

Query: 125 RAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181
             +     ++ D   R     G+   L  +E  +L  L   +G+ ++KT I   ++ + F
Sbjct: 123 PLQVQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWDINF 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 183 DS--DANVVEVAIKRLRAKLDGPFDNKLLHTIRGMGYVLE 220


>gi|58336426|ref|YP_193011.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227902981|ref|ZP_04020786.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58253743|gb|AAV41980.1| putative response regulator [Lactobacillus acidophilus NCFM]
 gi|227869224|gb|EEJ76645.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 238

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 13/172 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121

Query: 121 V-----SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +     + N+ E       G + +  D    E  G+   L  RE  +L YL  + G+ + 
Sbjct: 122 IVKKAEAANQEEPDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+  N +    + ++R +GY +
Sbjct: 182 REHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYV 232


>gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 232

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 6/157 (3%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAET 128
           S  P+I I+        +   + G DD + KP   RE++AR+ A+ RR  LK +    + 
Sbjct: 76  STTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAVLRRTLLKSTEEPFKF 135

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             +++  +  +    GE   L  +E ++LE L+ N+G+ + +  +   I+G ++   E  
Sbjct: 136 EGLKMDFEKHEVMKDGEKVDLTLKEFQLLEILIKNKGRVLTREYLLDKIWG-YEYIGETR 194

Query: 189 VVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
            V+ HI  LR+K+ +    +P  +++ R +GY  + N
Sbjct: 195 TVDVHIRHLRQKVEDD-DKNPKYIETIRGVGYRFNLN 230


>gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1]
          Length = 235

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R +  +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 61  LEVARQVRKNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQG 120

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N+  E G + +  +      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 121 TPSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 181 HLLQTVWG-YDYFGDVRTVDVTVRRLREKVED 211


>gi|162420052|ref|YP_001608150.1| DNA-binding response regulator CreB [Yersinia pestis Angola]
 gi|162352867|gb|ABX86815.1| transcriptional regulatory protein CreB [Yersinia pestis Angola]
          Length = 232

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 11/231 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           +  L++D   + D  I     +G +L  F+  E      SS    ++ ++  L    G  
Sbjct: 4   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPALAIVDVGLPDINGFD 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +    R++ A   +P+I ++        +   + G DD + KP   RE+ ARV  I RRL
Sbjct: 64  LCR--RMLAAAPDLPVIFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTILRRL 121

Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + S+  A T     F        G       ++  L R E  +L+ L+    +  ++ Q+
Sbjct: 122 QKSHLLAVTSTSYQFGHFSLDEAGARVTYHQQILGLIRYEYLLLKTLLLAPERIFSRQQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
              ++   +E+ ++  V++HI  LR KLR     D P+ + R LGYS+ + 
Sbjct: 182 MDIVWAQAEES-QDRTVDTHIKTLRSKLRTVYAEDSPIRTHRGLGYSLGYQ 231


>gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 239

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 13/135 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           G DD V KP    E++AR+ A+ RR +     +       + +  D  +    G V  L 
Sbjct: 104 GGDDYVTKPFSLDEVVARIRAVLRRTQPLIDDDAVIRVDDLELDDDAHEVRRGGTVIELS 163

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP- 209
             E ++L YLM N  + ++K+QI   ++  +D   + ++VES+IS LR+    K+  DP 
Sbjct: 164 PTEFKLLRYLMLNPNRVLSKSQILDHVWE-YDFNGDASIVESYISYLRR----KVDIDPD 218

Query: 210 ----VDSKRFLGYSI 220
               + +KR +GY +
Sbjct: 219 APALIQTKRGVGYVL 233


>gi|330879620|gb|EGH13769.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 229

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +  ++   NS E  E    S R D+  ++  +       +
Sbjct: 4   VLLVDDDRELTDMLSQYLTRERFTVICTNSAEEGEVEALSGRHDIVVLDIMM--PRMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IRA SQVP++ ++        +   + G DD V KP    E++AR+ AI RR++ 
Sbjct: 62  EVLRRIRAQSQVPVVLLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRS 121

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +    G + ++   R+   QG    L   E  +LE L  + G+ V+K  +  
Sbjct: 122 VPPTDAVRDVLHAGELALWPGKREARWQGRALELTGNEFCLLEELARHAGQLVSKQNLSM 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
              G    A  +  ++ HIS +R KL  RN      + S R LGY +
Sbjct: 182 NALG-RPLARYDRSIDVHISSIRHKLGPRND-NQSWIQSVRNLGYML 226


>gi|311069837|ref|YP_003974760.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870354|gb|ADP33829.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 239

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 13/203 (6%)

Query: 27  EGFNSL----EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           EGF ++      EE +    +E +  +   ++  G    E    IR +S  P+  ++   
Sbjct: 26  EGFQNVMTAGSAEEAIPIVKKEKIDLLVLDVMMDGMSGFEACAAIREYSDAPIFFLTAKT 85

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETG----PIRVFSDG 137
           S    L  F SG DD + KP +  E++AR+ A + R  K  + R+ T         +   
Sbjct: 86  SDTDKLSGFASGADDYITKPFNPLELVARIRAHLKRTYKQEDGRSSTPYAYEHFTFYPQF 145

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
            +  V G+V     +  ++L+Y   +    ++K QI+  ++G +    + N V  H+ KL
Sbjct: 146 AELIVGGKVVSCSAQLLQLLQYFCDHPNVVLSKDQIYEKVWG-YPSYGDNNTVMVHVRKL 204

Query: 198 RKKLRNKLGFDP--VDSKRFLGY 218
           R+K+      DP  + + R LGY
Sbjct: 205 REKIERDAS-DPEYIVTVRGLGY 226


>gi|266624372|ref|ZP_06117307.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288863787|gb|EFC96085.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 230

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           IR  +  P++ ++           F +G DD + KP  + E+L+R  ++ RR  V     
Sbjct: 67  IRKKTMAPILFLTARTQDSDKSMGFSAGGDDYLAKPFSYSELLSRCKSLLRRYLVYQGKS 126

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +NR   G + V  D R   V+G    L  RE  IL  L+ NR K  +   I+ +++
Sbjct: 127 FAAPDNRLVLGDLTVDQDTRTVTVEGRDVNLTSREYCILVLLLKNRRKIFSSENIYESVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
                    N V  HI  LR+K+
Sbjct: 187 NEPYFYSANNNVMVHIRNLRRKI 209


>gi|251782376|ref|YP_002996678.1| DNA-binding response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391005|dbj|BAH81464.1| DNA-binding response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 182

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 86/165 (52%), Gaps = 16/165 (9%)

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           L ++ R   Q +P++ ++     ++  + F+ GVDD + KPI   E++ R+ A+ RR   
Sbjct: 15  LVKLFRESGQKLPILMMTAKSQFESLEEAFELGVDDYLVKPIILSELVLRIKALLRRVKL 74

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L+++N + +   +   +D +   ++     LP +E  +L  L++   K   +  +
Sbjct: 75  EHEQELQLANCKLQYQSL-ALTDLKTSRIE----QLPPKEFYVLYKLLSTPQKIFTRLDL 129

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              I+G+ +E  +E VV++ I ++R+K ++   FD + + R LGY
Sbjct: 130 LDDIWGM-EEDYDERVVDACIKRIRQKCKDYQDFDII-TIRGLGY 172


>gi|254424112|ref|ZP_05037830.1| Transcriptional regulatory C terminal domain protein [Synechococcus
           sp. PCC 7335]
 gi|196191601|gb|EDX86565.1| Transcriptional regulatory C terminal domain protein [Synechococcus
           sp. PCC 7335]
          Length = 260

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 10/146 (6%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGP 130
           P+I ++   ++Q  ++ F++G +D ++ P    E +AR+ A     +VSN+ A       
Sbjct: 107 PIILLTSENAVQERIEGFEAGANDCISPPFVKAEFVARINAKLALRQVSNDSAAILRCAD 166

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +  + R+    G    L  +E  +LE+LM +  + + +TQI   ++  +D     N +
Sbjct: 167 IVLNRETREVFRGGVSIQLTAKEFSLLEFLMDHYCQVLTRTQILEDVWD-YDYTGNSNTI 225

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFL 216
           E +I    + LRNKLG    D KR +
Sbjct: 226 EVYI----RYLRNKLG--DTDKKRLI 245


>gi|167917734|ref|ZP_02504825.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
          Length = 239

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       +  L  RE  +LE L+   G+ V+K Q
Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 219


>gi|162448137|ref|YP_001621269.1| OmpR family response regulator [Acholeplasma laidlawii PG-8A]
 gi|161986244|gb|ABX81893.1| two-component system, OmpR family, response regulator [Acholeplasma
           laidlawii PG-8A]
          Length = 216

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 10/161 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++   + ++P+I +S   +    +   D G DD ++KP    E+ AR+ A  R+   S
Sbjct: 63  LAKLREFYKELPVIMLSALDTEMDKVKALDLGADDYMSKPFGILELTARMNAHLRK---S 119

Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             R+    G + +  +     V      L  +E  +L  ++ N GK V K  +F+ I+ +
Sbjct: 120 GARSVITKGNVTIDKEKYKCFVGNNEIALTTKEFDVLYLILKNDGKVVTKETLFNEIWQM 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            D ++E   ++ HI  LR KL+   G D  + + R +GYS+
Sbjct: 180 -DVSIETRTLDMHIKSLRDKLK---GADIEIKTIRGVGYSL 216


>gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 229

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 3/112 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPR 151
           G DD ++KP +  E+LAR+ A+ RR   S  +     G + +           +   L  
Sbjct: 96  GADDYLSKPFNIDELLARIEAVLRRTHQSKPSQHVSVGDLEIDFQRLSVCKNRQKLDLSS 155

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           RE ++LE L  + G+ V + +I+  ++G +D AV    ++ HI++LR KL +
Sbjct: 156 REFQVLECLFRSAGQTVDREKIYQEVWG-YDTAVTNRTIDFHIARLRSKLED 206


>gi|332799517|ref|YP_004461016.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697252|gb|AEE91709.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 230

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI----RVFSDGRDPEVQGEV 146
           F+ G DD V KP   RE+ ARV A+ RR+    +      I     +    R  +V G+ 
Sbjct: 94  FELGADDYVVKPFSPRELTARVKALLRRMASKQDYEAEALIFPELLIDPAARVVKVDGKE 153

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  +E  +L +L  N+GK   + ++   ++G +D       V++HI +LR+KL     
Sbjct: 154 VALTPKEFDLLYFLAKNKGKAFNREKLLKEVWG-YDFYGSLRTVDTHIKQLREKLGRSKA 212

Query: 207 FDPVDSKRFLGYSID 221
              +++   +GY  +
Sbjct: 213 ASYINTVWGIGYKFE 227


>gi|319639234|ref|ZP_07993985.1| two-component system regulator [Neisseria mucosa C102]
 gi|317399418|gb|EFV80088.1| two-component system regulator [Neisseria mucosa C102]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 22/170 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +R  S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR +
Sbjct: 61  LDVLKNVRTQSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQ 120

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            SN      N      + ++   R   ++     L   E  +LE LM + G+ V+K  + 
Sbjct: 121 HSNEQNNAPNSISVSDVVLYPAKRQASIKDTPLELTSTEFNLLEVLMRHAGQVVSKETL- 179

Query: 175 SAIYGL------FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +I  L      FD +     ++ HIS +R KL +      + + R LGY
Sbjct: 180 -SIEALDRKLAKFDRS-----IDVHISSIRHKLGDA---SLIQTVRGLGY 220


>gi|218248106|ref|YP_002373477.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060567|ref|YP_003138455.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218168584|gb|ACK67321.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590733|gb|ACV01620.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + +R+  +  P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR 
Sbjct: 60  IEICQALRSQGNTTPVLFLTAKDTLNDRVLGLDAGADDYLVKPFELRELLARVRALLRRS 119

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  + + +   + +  D +    QG    L  +E ++L Y M N G+ +   QI+ 
Sbjct: 120 PHLDPTPSTKLKIADLELDRDNQVAYRQGRGVNLSDKEVQLLSYFMENPGQLLTHEQIYQ 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++   ++    NVV + I  LR+K+
Sbjct: 180 QLWDQTEQP-NSNVVAALIRLLRRKI 204


>gi|163867922|ref|YP_001609126.1| two-component response regulator [Bartonella tribocorum CIP 105476]
 gi|161017573|emb|CAK01131.1| two-component response regulator [Bartonella tribocorum CIP 105476]
          Length = 228

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 16/191 (8%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVD 96
           L ++   DV  ++  L+ +    L +   +RA  ++ P++ +S    +   +    +G D
Sbjct: 39  LATTENYDVMVVDRMLLHRDG--LSIITELRAKGNETPVLILSALGQVNDRVTGLRAGAD 96

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV------FPLP 150
           D + KP    E+LARV  + RR     N  E   +   S+     +   V        L 
Sbjct: 97  DYLTKPYAFSELLARVEVLQRR----KNPKEAETVYCVSNLELDRLAHTVKRGDRNILLQ 152

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209
            RE R+LEYLM   G+ V +T +   ++   FD   + NV++ HIS+LR K+        
Sbjct: 153 PREFRLLEYLMRYAGQVVTRTMLLENVWDYHFDP--QTNVIDVHISRLRAKIEKDFDVPL 210

Query: 210 VDSKRFLGYSI 220
           + + R  GY +
Sbjct: 211 LHTVRGAGYML 221


>gi|160946585|ref|ZP_02093788.1| hypothetical protein PEPMIC_00543 [Parvimonas micra ATCC 33270]
 gi|158446969|gb|EDP23964.1| hypothetical protein PEPMIC_00543 [Parvimonas micra ATCC 33270]
          Length = 229

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 4/158 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR HS VP+I IS        +     G DD + KPI     LA++ AI RR        
Sbjct: 69  IRKHSNVPIIFISSKSENIDIVMGIQFGADDYITKPIDLNVTLAKIKAILRRSYDFTKDF 128

Query: 127 E---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           E      + ++ D    +   +   L   E  ILE L   +G   ++  I    +   D+
Sbjct: 129 EFLSFANVFLYMDKNKVKYNDDEISLTNTETMILETLFKAKGGVASRESIMEKCWH-GDD 187

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++N +  +I++LRKK  +    D + +K+  GY ++
Sbjct: 188 YIDDNTLAVNITRLRKKFADIKLNDFIQTKKGSGYYLN 225


>gi|221201978|ref|ZP_03575014.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2M]
 gi|221204892|ref|ZP_03577909.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2]
 gi|221213870|ref|ZP_03586843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD1]
 gi|221166047|gb|EED98520.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD1]
 gi|221175749|gb|EEE08179.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2]
 gi|221178061|gb|EEE10472.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2M]
          Length = 235

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 78  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 137

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R +    RV +     E++ ++ P    E R+L + M +  +  ++TQ+   ++G  D
Sbjct: 138 GLRLDPATHRVAAQTNGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 192

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 193 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|146320736|ref|YP_001200447.1| response regulator [Streptococcus suis 98HAH33]
 gi|145691542|gb|ABP92047.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           98HAH33]
 gi|292558309|gb|ADE31310.1| Transcriptional regulatory protein [Streptococcus suis GZ1]
 gi|319758090|gb|ADV70032.1| response regulator [Streptococcus suis JS14]
          Length = 224

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 81/156 (51%), Gaps = 5/156 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR    +P+I IS        +   + G DD V+KP     + A++ A  RR+   +  +
Sbjct: 71  IRKTMTMPIIFISSSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSS 130

Query: 127 ETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
           E      ++  DGR    + E   L   E +IL  L+  +G+ V+K ++   ++   +E 
Sbjct: 131 ELSIDQFQLSLDGRFSN-ESEQVQLSPTETKILSALLERQGQIVSKDELLEKLWE-NEEF 188

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++N +  ++++LRKK+ +++GF+ + + R +GY I
Sbjct: 189 IDQNTLNVNMTRLRKKV-SEVGFERIHTVRGVGYLI 223


>gi|150017260|ref|YP_001309514.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903725|gb|ABR34558.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 223

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 75/143 (52%), Gaps = 3/143 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           +R  S VP++ ++     +  L  +D G DD + KP   + ++A+V A+ +R +  + ++
Sbjct: 68  LREVSTVPVVLLTAKGEEEDKLQGYDYGADDYITKPFSPKVLIAKVKALLKRTREDLDSS 127

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             +   + +     + ++ G+   L  +E  +L YL+ N G  +++  I   ++G+ D  
Sbjct: 128 FQDFNGLTINKLSHEVKIDGKEIILSPKEYELLMYLVTNEGIALSRDNILDNVWGI-DYY 186

Query: 185 VEENVVESHISKLRKKLRNKLGF 207
            +   V++++ +LR+KL +K  +
Sbjct: 187 GDIRTVDTNVKRLREKLLDKSNY 209


>gi|300790732|ref|YP_003771023.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800246|gb|ADJ50621.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 249

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 77/146 (52%), Gaps = 6/146 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +R+ + Q+P++ ++   +++  +    +G DD V KP    E+  R+ A+ RR 
Sbjct: 83  LEVLRRMRSEAPQLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRLRALLRRA 142

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S +    G + +  D R+    G++ PL   E  +L YLM N  + ++K QI  
Sbjct: 143 GGVTGASGSTLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPKRVLSKAQILD 202

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++  +D   + N+VE +IS LRKK+
Sbjct: 203 RVWS-YDFGGQANIVELYISYLRKKI 227


>gi|266620606|ref|ZP_06113541.1| DNA-binding response regulator [Clostridium hathewayi DSM 13479]
 gi|288867784|gb|EFD00083.1| DNA-binding response regulator [Clostridium hathewayi DSM 13479]
          Length = 230

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 3/150 (2%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAET 128
           + ++P++ +S    L      FD G+DD + KP+   E+L RV A+ RR  + ++ R   
Sbjct: 78  NKRIPILFVSARDDLSFKQRGFDLGIDDYMVKPLDLSELLMRVRALLRRANIEASRRLVV 137

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + + +D  +     +  P+  RE  I+  L++      +++Q+    +G+ D      
Sbjct: 138 GSMVLDADAMEITQGEQEIPVTTREFNIMFKLLSYPNHTFSRSQLMDEFWGV-DSDTSLR 196

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            V+ +I+KLR K      F+ + + R LGY
Sbjct: 197 AVDVYITKLRDKFSACSEFE-IRTIRGLGY 225


>gi|317046730|ref|YP_004114378.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316948347|gb|ADU67822.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 220

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++ G        G +++   S      L  S +  +  ++  L  +    L
Sbjct: 3   LLIVEDDALLQSGLAQALSAQGYAVDCAASAAESNALLRSGQYSLIVLDLGLPDRDGATL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R    VP++ ++   +L+  +D  D+G DD + KP    E+ AR  A+ RR + 
Sbjct: 63  -LRQWRRDGINVPVLILTARDALEDRVDGLDAGADDYLVKPFALVELQARARALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  + G + +    +   ++     +  +E  +L  L+   G+ V +  +   +Y  
Sbjct: 122 HSDNLLQQGDLTLNLSSQQVLLENLPLEITPKEFALLTRLLMRVGQNVHRETLQQDLYSW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+    KLG D + + R +GY ++
Sbjct: 182 NDDP-GSNTLEVHIHNLRR----KLGKDRIKTVRGVGYRLE 217


>gi|228958269|ref|ZP_04119997.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801428|gb|EEM48317.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 228

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 71  LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G +D   
Sbjct: 131 IQVGDVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG-YDFEG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 190 NERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLE 225


>gi|229125247|ref|ZP_04254353.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228658207|gb|EEL13941.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 221

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++     Q  +     G DD V KP H  E+LAR+ A+ RR K  +   
Sbjct: 61  IREFSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVLRRTKRHHKIE 120

Query: 127 ETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
             G I  + + R    + G        E  +L   + N      + Q+   I+G   E  
Sbjct: 121 YKGLI--WDEARHTASMNGNELLFTPIEFSLLGLFLNNLNYVFTREQLIERIWGHASE-T 177

Query: 186 EENVVESHISKLRKKLRN 203
           E+  V+SHI  LR+KLR 
Sbjct: 178 EDRTVDSHIRNLREKLRK 195


>gi|225867072|ref|YP_002752450.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225789149|gb|ACO29366.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   + P+I ++   S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKKTPIIIVTSNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDY 121

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + ET   +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 122 -NQQNETNFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-YDVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223


>gi|210615972|ref|ZP_03290872.1| hypothetical protein CLONEX_03091 [Clostridium nexile DSM 1787]
 gi|210149977|gb|EEA80986.1| hypothetical protein CLONEX_03091 [Clostridium nexile DSM 1787]
          Length = 224

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----S 122
           IR  ++ P++ +S        +   + G DD + KP     + A+V A+ RR        
Sbjct: 67  IRKIAKTPIVFLSSASDNMNIVMAMNMGGDDFIEKPFDLNVVTAKVQAMLRRAYSFQGNL 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     G +   +DG     + +   L + E +IL+ LM + GK V + ++ +A++   D
Sbjct: 127 NVLEHQGLLLNLNDGIVSYKEKKT-ELTKNEFKILQVLMEHAGKIVTREELMTALWE-SD 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V++N +  ++++LR+KL      + + +K+ +GY I+
Sbjct: 185 AFVDDNTLTVNVTRLRRKLAELAAVEFIKTKKGIGYIIE 223


>gi|196228340|ref|ZP_03127207.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227743|gb|EDY22246.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 241

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 9/150 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAAIYR 117
           LEL R++R  +    I +      Q+ LD    F+ G DD V KP   RE++ RV A+ R
Sbjct: 79  LELCRVLRGDAATEGIHVIMLTERQSELDRILGFEFGTDDYVAKPFSVRELVLRVKAVQR 138

Query: 118 RLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   S  N  + GPI V        V G    L   E ++L  L         + ++ + 
Sbjct: 139 RAGGSKRNVVKAGPIAVDHSRCCALVNGAAIDLTPTEFKLLATLAERPNVVQTRDKLLTE 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           ++G  + A+E   V++++    ++LRNKLG
Sbjct: 199 VWG-NENAIENRSVDTYL----RRLRNKLG 223


>gi|116326604|ref|YP_796525.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|3687663|gb|AAC62213.1| LcoR [Lactococcus lactis]
 gi|76574958|gb|ABA47427.1| response regulator [Lactococcus lactis]
 gi|116108972|gb|ABJ74094.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 222

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 6/155 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDF-FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           IR  S++P+I ++      T + F   +G DD + KP     +LAR+ AI RR  +S ++
Sbjct: 67  IREFSEIPIIMLTARGQ-NTDVSFGLKNGADDYITKPFDETILLARIEAILRRTSLS-DK 124

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            +   + +  +     +  ++  +   E  +L+  + ++    ++ QI   I+GL  + V
Sbjct: 125 IDFKNLSLDKEKFQIWINQKLLEVTPIEFNLLDMFLTHQNHVFSREQIIEHIWGLTAD-V 183

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   V+SHI  LR+K+R K  FD VDS     Y +
Sbjct: 184 DNRTVDSHIRNLREKMR-KESFD-VDSFLLTVYGV 216


>gi|326800747|ref|YP_004318566.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326551511|gb|ADZ79896.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 226

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 83/164 (50%), Gaps = 8/164 (4%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++L R I+ ++  +P+I ++   +    L+ FD+G DD + KP   RE+ AR+  + +R 
Sbjct: 60  IDLCREIKESYPDLPIIMLTALGTTDDKLEGFDAGADDYLVKPFDFRELEARIRVLLKRG 119

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             SN+ +    + G + +    R  +       L  +E ++LEY++ N+G+ + + +I  
Sbjct: 120 SASNSASTAILKAGELEMNLHTRIVKRGNVEINLTPKEFKLLEYMIRNKGRVLPRVEIAE 179

Query: 176 AIY-GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++   FD     N ++ +I+ LR K+        + +K  +G+
Sbjct: 180 KVWDTTFDTGT--NFIDVYINYLRNKIDKAFEEKYIHTKPGMGF 221


>gi|302387089|ref|YP_003822911.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197717|gb|ADL05288.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 228

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + +L DD +L+ DG   L    G  L+   ++     + + ++ D+  ++  L  G G  
Sbjct: 4   ILLLEDDLSLI-DGLSCLLKRQGFELDIARTVREANTIWTDSKYDLLILDVSLPDGSG-- 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E+ + +R  S+VP+I ++        +   D G DD + KP     +L+R+ A+ RR 
Sbjct: 61  -FEVCQKVRQVSKVPIIFLTASDEELNIVTGLDIGGDDYITKPFKLGVLLSRINALLRRA 119

Query: 120 KV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           K     +    +  I+V          G++  L   E R+L  LM N    ++K +I   
Sbjct: 120 KNFGEHDTEIISNGIKVLLLQGQAYKGGQLLDLTTAEYRLLCLLMQNPNIILSKEKILEK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223
           ++   +  V++N +  +I +LR K+    G +P  + + R +GY   WN
Sbjct: 180 LWDGDESYVDDNTLAVYIRRLRIKIEQNPG-EPQMLLTVRGMGYK--WN 225


>gi|282852927|ref|ZP_06262268.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
 gi|282556035|gb|EFB61656.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
          Length = 228

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 88/169 (52%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S++P++ +S   S    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  IEVIKEVRKDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQ 120

Query: 121 --VSNNRA---ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
             V +++    E GP+ +  D  + + + G+V  L   E  IL Y++A+   RV +  +I
Sbjct: 121 KEVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGIL-YILASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 180 FERVWQQ-ESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|290580423|ref|YP_003484815.1| putative response regulator [Streptococcus mutans NN2025]
 gi|254997322|dbj|BAH87923.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 229

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 12/188 (6%)

Query: 22  DGVSLEGFNSLEF----EEWLQSSARE--DVSAIEAFLI-GKGEKVLELPRIIRAHSQVP 74
           + +++ GFN+L      +E L+   +   D++ ++  L  G G +VL   R IR  S +P
Sbjct: 23  ESLNIAGFNNLTSVQSKKEALEQLGKRSFDLAILDIMLPDGSGFEVL---REIRKTSTMP 79

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134
           ++ +S    ++     F+ G DD + KP   +E+  R+ +I +R     +     P    
Sbjct: 80  VLFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQV 139

Query: 135 SDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
           +  +    +GE+   L  +E  IL+ L  N+ + V   Q+   ++GL  +   EN + +H
Sbjct: 140 NFSQALITKGELEIQLTAKEYSILKVLYNNQNRIVTFDQLLEKVWGLQYQGY-ENTMMAH 198

Query: 194 ISKLRKKL 201
           I K+R+K+
Sbjct: 199 IRKIRQKI 206


>gi|254820274|ref|ZP_05225275.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           intracellulare ATCC 13950]
          Length = 226

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 9/157 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122
           +R     P+I +S        ++  D+G DD V KP    E LAR+ A  RR     +V 
Sbjct: 67  LRGWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTAASEVE 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               ET    V    +     G    L   E  +LE L+ NRGK V + ++   ++G   
Sbjct: 127 QPVIETESFTVDLAAKKVSKNGGEVHLTPTEWGMLEVLVRNRGKLVGREELLKEVWGPA- 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            A E + +  ++++LR+KL +    DP + K  L  S
Sbjct: 186 YATETHYLRVYLAQLRRKLED----DPSNPKHLLTES 218


>gi|229010510|ref|ZP_04167712.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229132011|ref|ZP_04260874.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229166052|ref|ZP_04293816.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617463|gb|EEK74524.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651411|gb|EEL07383.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228750708|gb|EEM00532.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 22/230 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +LIDD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 7   LLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  I+R  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR   
Sbjct: 65  DICPILRQKTDCPIFFLTAKTSDVDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N + +   I  FS GR        +  V G V     +  ++L +   N     +K ++
Sbjct: 125 QNIQEQR--IYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +  ++G      ++N V  HI KLR+K+      DP     + + R LGY
Sbjct: 183 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQ----DPSKPEYIKTVRGLGY 228


>gi|254489142|ref|ZP_05102346.1| two component response regulator [Roseobacter sp. GAI101]
 gi|214042150|gb|EEB82789.1| two component response regulator [Roseobacter sp. GAI101]
          Length = 224

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 4/148 (2%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132
           P+I ++        +   D+G DD + KP    E+ ARV A+ RR  +   +    G + 
Sbjct: 74  PVILLTARADTDDCVAGLDAGADDYLIKPFEMAELEARVRALLRRRAIPQQQLRAVGALH 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
                R    Q     LPRRE  + E L+A  G+ V+K+ +   +YG+  + +EE VVE 
Sbjct: 134 FDPVARQLFDQQTELDLPRREMSVFECLLAADGRLVSKSAVLDHVYGIGAD-IEETVVEV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +IS+LR +L+   G   + ++R LGY +
Sbjct: 193 YISRLRGRLKPH-GI-VIQTRRGLGYQM 218


>gi|167621347|ref|ZP_02389978.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
          Length = 236

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 63  LDVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 121

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q
Sbjct: 122 -----GAGGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQ 176

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 177 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 222


>gi|187735605|ref|YP_001877717.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425657|gb|ACD04936.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 234

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 81/165 (49%), Gaps = 7/165 (4%)

Query: 57  GEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G  VL EL R  R  + +P+I ++     +  +   + G DD V KP   +E++ RVA++
Sbjct: 60  GHGVLRELRRDSRTQN-IPVIFLTAKAQAEDRIQGLELGADDYVTKPFSPKELVLRVASV 118

Query: 116 YRRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +R + +     AE GP     +     +  E   L   E +++ +++   G+ + +  +
Sbjct: 119 LKRCEHTPGSVIAEYGPFTFDKNALKFYIDKEEVDLTATEFKLMIHMVEREGQTLNRNDL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            S ++G +    +   +++H+ +LR+KL      D +++ R +GY
Sbjct: 179 LSCVWG-YSHQAQSRTLDTHMKRLRQKLAPYA--DCIETVRSIGY 220


>gi|153009992|ref|YP_001371207.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561880|gb|ABS15378.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 255

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 11/142 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   +    +G DD + KP    E+LARV  + RR   S   A+T   
Sbjct: 92  ETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRR--SSPREADTIYR 149

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            G + +         Q     L  RE R+LEYLM + G+ V +T +   ++   FD   +
Sbjct: 150 VGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP--Q 207

Query: 187 ENVVESHISKLRKKLRNKLGFD 208
            NV++ HIS+LR K+    GFD
Sbjct: 208 TNVIDVHISRLRSKIEK--GFD 227


>gi|308069300|ref|YP_003870905.1| Two-component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa E681]
 gi|305858579|gb|ADM70367.1| Two-component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa E681]
          Length = 230

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 5/162 (3%)

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L RI++  H  VPL  ++        +  F+ G  DV+  P + R   ARVA + R   +
Sbjct: 63  LIRILQQNHPHVPLFAMTSSDEEDHIVSCFEQGAHDVIVLPFYPRVFQARVANLLRIFGI 122

Query: 122 SNN--RA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  RA E G + + +  R     G+   L  +E  +L +L  +  +  ++ QI   ++
Sbjct: 123 ERDVKRAIEAGDLHIDNASRMVSRGGQKLELTPKEFDLLLHLAIHLNQVCSRQQILKDVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D  V+ NVV+ +I  LR K+     F  + ++R +GYS+
Sbjct: 183 K-HDYIVDTNVVDVYIRHLRVKVDKGYKFKMIRTERGIGYSL 223


>gi|296156999|ref|ZP_06839836.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892885|gb|EFG72666.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 226

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 106/217 (48%), Gaps = 17/217 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           + L + GY+  + +DGV+  G +  E E++       D+  ++  L G+ G  +L+  R 
Sbjct: 18  KGLSEAGYVVDWAEDGVT--GQHQAETEDY-------DLLILDVMLPGQDGWTLLQNLRR 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
            R+    P++ ++    +   +   + G DD + KP    E++ARV +I RR K   + +
Sbjct: 69  TRS---TPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGKPRESMS 125

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
            +   + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ + F+  
Sbjct: 126 LKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWDMNFNS- 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 185 -DTNVVDSAIRRLRSKVDDAYEPKLIHTVRGMGYVLE 220


>gi|295692613|ref|YP_003601223.1| response regulator [Lactobacillus crispatus ST1]
 gi|295030719|emb|CBL50198.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 240

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 25/179 (13%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR+
Sbjct: 64  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI----------------LEYLMAN 163
            +     E  P     D +D E+  +   + +  R +                L Y MA 
Sbjct: 124 MM-----EEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQ 178

Query: 164 RGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++V ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 179 KPRQVFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKL-EKVGAKVIQTVWGVGYKFD 235


>gi|291005149|ref|ZP_06563122.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 13/166 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL R IR  S VP++ +S        +   ++G DD V KP     ++AR+ ++ RRL+
Sbjct: 64  IELCRRIRGCSHVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRRLR 123

Query: 121 VSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A    +R F       D  +    G   PL   E R++    A  G  + ++ + 
Sbjct: 124 --REPAPASAVRTFGDLEVDLDSLEVRRAGRSVPLTPTELRLVLEFAAQPGVVLTRSALL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +    +  VV+ H+    ++LR K+G + V++ R  GY +
Sbjct: 182 ERVWD-YAWGGDTRVVDVHV----QRLRAKIGRERVETVRGFGYKL 222


>gi|262045791|ref|ZP_06018755.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|260573750|gb|EEX30306.1| response regulator [Lactobacillus crispatus MV-3A-US]
          Length = 240

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 24/166 (14%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP+I ++   S    +     G D+ V KP     ++AR+ A++RR+ +    A T    
Sbjct: 77  VPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVMMEEEPAHTQ--- 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRI----------------LEYLMANRGKRV-AKTQIFS 175
              D +D E+  +   + +  R +                L Y MA + K+V ++ Q+  
Sbjct: 134 --EDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQVFSRDQLLE 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 192 LVWG-YEYYGEERTVDAHIKKLRQKL-EKVGAKVIQTVWGVGYKFD 235


>gi|229080381|ref|ZP_04212905.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2]
 gi|228702943|gb|EEL55405.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2]
          Length = 230

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 73  ELLREFRKLNNTPVLMMTALSDDENQIRSFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+   GK ++   I S ++G +
Sbjct: 133 VAKEIHYGKLTLLPEDFKVFYDDEELLLTLKEFEILMLLVQKNGKTLSHEVILSRVWG-Y 191

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL + +    + + R +GY ++
Sbjct: 192 DFDGDGSTVHTHIKNLRAKLPDNI----IKTVRGVGYRLE 227


>gi|225075455|ref|ZP_03718654.1| hypothetical protein NEIFLAOT_00460 [Neisseria flavescens
           NRL30031/H210]
 gi|224953273|gb|EEG34482.1| hypothetical protein NEIFLAOT_00460 [Neisseria flavescens
           NRL30031/H210]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 22/170 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +R  S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR +
Sbjct: 61  LDVLKNVRTQSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQ 120

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            SN      N      + ++   R   ++     L   E  +LE LM + G+ V+K  + 
Sbjct: 121 HSNEQNNAPNNISVSDVVLYPAKRQASIKDTPLELTSTEFNLLEVLMRHAGQVVSKETL- 179

Query: 175 SAIYGL------FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +I  L      FD +     ++ HIS +R KL +      + + R LGY
Sbjct: 180 -SIEALDRKLAKFDRS-----IDVHISSIRHKLGDA---SLIQTVRGLGY 220


>gi|225159323|ref|ZP_03725621.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224802077|gb|EEG20351.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 263

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 4/145 (2%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L R +RA  Q +P++ ++   ++   +   ++G DD + KP    E+LARV A+ RR 
Sbjct: 67  ITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVRALLRRF 126

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +     + +  + R     G    L  RE  +L YL  ++G+ V++ Q+   I
Sbjct: 127 TTPREPWQRSVADLAINLETRLVTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQLAREI 186

Query: 178 YGLFDEAVE-ENVVESHISKLRKKL 201
           +   + A   +NV++ HI++LR+K+
Sbjct: 187 WRENNRATPIDNVIDVHIARLRRKI 211


>gi|94312516|ref|YP_585726.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356368|gb|ABF10457.1| putative two-component response regulator [Cupriavidus
           metallidurans CH34]
          Length = 224

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 14/196 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66
           RAL + G++     DG+  E    L  EE+       D   ++  L GK G  VL+  R 
Sbjct: 18  RALEQGGFVIEHVTDGLKAEA--RLMAEEY-------DAVVLDLRLPGKDGLAVLKAMR- 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125
                + P++ ++   +L   +   + G DD + KP    E+ AR+ A+ RR +  ++ R
Sbjct: 68  -GRDDRTPVLILTAQDTLDERVRGLNLGADDYLPKPFAIAELEARILALIRRSRGRAHPR 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G +    + R   + G    L  RE  +L  L+A  G+ + K Q+   ++ L D  V
Sbjct: 127 LQCGTLVFDGEARSFTLAGAPLSLTPRESTLLGALLARSGQPLTKAQLLDKVFSL-DADV 185

Query: 186 EENVVESHISKLRKKL 201
             + +E  + +LRKKL
Sbjct: 186 SPDAIEVLVYRLRKKL 201


>gi|73539766|ref|YP_294286.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
 gi|72117179|gb|AAZ59442.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
          Length = 235

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 11/148 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           ++P++ +S   +    +    +G DD + KPI   E+ AR+ A+ RR    +N A   P+
Sbjct: 75  RIPVMFLSSRDAEADIVSALVAGADDYMAKPIRAAELSARIGAVLRR-SSPDNVARNAPL 133

Query: 132 R----VF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           R    VF    R     G    L  +E  +   L  N G+ V +  I + ++G     + 
Sbjct: 134 RLAGYVFDCAARQVTCHGHPICLTPKEFDLAVLLFRNEGRIVTRDHIIATVWGREISPLS 193

Query: 187 ENVVESHISKLRKKL----RNKLGFDPV 210
              +++H+S++R KL    RN L   PV
Sbjct: 194 RT-IDTHVSRVRSKLGLHARNGLRLTPV 220


>gi|42781127|ref|NP_978374.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737048|gb|AAS40982.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 229

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP    E+ AR+ ++ RR++V + +A+   +GP  +          G++  L 
Sbjct: 95  GADDYIAKPFSPVELTARIQSLLRRIEVHDEKADMITSGPFSLNVIEERLYKNGQLVDLT 154

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E  IL YLM    K V++ +I + I+G  +   E  VV+ ++ +LR+KL
Sbjct: 155 PTEYMILHYLMNQAAKPVSRDEILNMIWGT-NYVGETKVVDVNMRRLRQKL 204


>gi|219669964|ref|YP_002460399.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540224|gb|ACL21963.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 219

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 18/216 (8%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65
           +  LVK GY       G   E   +L  E       + D+  ++  L G  GE ++  P+
Sbjct: 17  EEVLVKKGYAVARAYSGT--EALLALPVE-------KPDLILLDLMLPGLSGEDIM--PK 65

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           +      +P+I +S    +   +     G  D + KP H +E+LARV    R+    +  
Sbjct: 66  L----KGIPVIVVSAKTDIDDKVGLLLEGAVDYITKPFHMKELLARVVVGLRKGPEPDKS 121

Query: 126 AET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 IR+++      V  +   L R E  IL+ LM N  + + K+ +   I     + 
Sbjct: 122 VLAFADIRLYTALHTVWVAEKEVRLTRTEYAILKLLMQNPAQVITKSLLLDRISEDTPDC 181

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E + ++ HIS LR+KLR   G D +++   +G+ +
Sbjct: 182 TESS-LKMHISHLRRKLREASGQDYIEAVWGIGFKL 216


>gi|332968048|gb|EGK07135.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 240

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L + IR  S+VP++ ++   +    L  F  G DD V KP H  E++AR+ A+ RR +
Sbjct: 64  FDLCQEIRKTSKVPILFLTSRTADMDILVGFGYGGDDYVTKPFHALELVARIKALLRRHR 123

Query: 121 -----VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                ++  + E    G  +V     + +V+G+      RE ++L +   +       ++
Sbjct: 124 YFQEQLAQQQPEVLDYGDFQVIRSAGELQVKGKPVDCSAREFQLLLFFCDHPHHIFNVSE 183

Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKL 201
           ++  ++    EA+ EE  V  HIS+LRKK+
Sbjct: 184 LYEKVWK--QEAIGEEKTVVMHISRLRKKI 211


>gi|317506419|ref|ZP_07964224.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255299|gb|EFV14564.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 226

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  + VP+I +S        +D  D+G DD V KP    E+LAR+ A  RR   +  + 
Sbjct: 67  LRGWTNVPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRR--GARTQG 124

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E  P+ V          +     G    L   E  +LE L+ N+GK V++  + S ++G 
Sbjct: 125 EGEPVVVTDSFAVDLVAKKVTKDGAEVHLTPTEWGMLELLVRNQGKLVSQKDLLSEVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKL 201
                E + +  ++++LR+KL
Sbjct: 184 PSYKTETHYLRVYLAQLRRKL 204


>gi|254422502|ref|ZP_05036220.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189991|gb|EDX84955.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 676

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFP 148
            ++G DD + KP    E+LARV A+ RR K S      E   +R+  + R+   +     
Sbjct: 91  LNAGADDYITKPFELEELLARVRALLRRGKTSVVLTTLEWEGLRLEVNSRELTYRNNKLS 150

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           L  +E  +LE  + N  +  ++  I   ++  + +A  E  V SH+  LR+KLR 
Sbjct: 151 LTPKEHAMLELFLRNPAQAFSREAIIDNLWS-YSDAPGEETVTSHMKGLRRKLRT 204


>gi|187928843|ref|YP_001899330.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725733|gb|ACD26898.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 18/164 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--------R 118
           IR+ S+ P++ ++    +   +  F+ G DD + KP    E+LAR+    R        R
Sbjct: 66  IRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSTSKESER 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L++++   +    RVF      E+  + F +       L  LM  RG+ +++T I S ++
Sbjct: 126 LRIADLDIDVLGRRVFRGTTRIELTNQEFSM-------LHLLMRRRGEVLSRTTIASQVW 178

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + FD   + NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 179 DVNFD--TDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLD 220


>gi|28211462|ref|NP_782406.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203903|gb|AAO36343.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 159

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 6/137 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVF 147
            D G DD + KP   RE+++R+ AI RR K S N     + G + + ++    E +GE  
Sbjct: 19  LDIGADDYITKPFRVRELISRIKAIQRRFKSSENNKNILKCGDLILNTETAKLENKGEDI 78

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLG 206
            L  +E +++   M N  K +++ +I + +        + N +  +I ++R K+  +   
Sbjct: 79  ILSAQEYKLILIFMTNAKKVMSREEILNKLIEGEGSYFDTNTLSVYIKRIRDKIEEDSSN 138

Query: 207 FDPVDSKRFLGYSIDWN 223
            + + +KR +GY  +W+
Sbjct: 139 PEYIKTKRGIGY--EWS 153


>gi|114561672|ref|YP_749185.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332965|gb|ABI70347.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 244

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 4/152 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           ++  G+ ++   ++ +   +VPL+ ++   S    +   ++G DD + KP    E+ ARV
Sbjct: 66  MLPDGDGIMLCEQLRQDGKEVPLMLLTAKDSEADVVLGLEAGADDYLVKPFSVLELRARV 125

Query: 113 AAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            A+ RR K  + +    E   + + S  R+     +   L  RE  +L +L  +  +  +
Sbjct: 126 KALLRRGKTQHEQTQQIEFNSVSINSSTREVTAFNKALTLTAREFDLLLFLAKHPQQVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + Q+  A++G ++    E+ V SHI++LR KL
Sbjct: 186 RMQLLEAVWG-YNYDGYEHTVNSHINRLRNKL 216


>gi|53719003|ref|YP_107989.1| phosphate regulon two-component system response regulator
           [Burkholderia pseudomallei K96243]
 gi|53725530|ref|YP_102547.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
           23344]
 gi|76810912|ref|YP_333028.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710b]
 gi|83719375|ref|YP_443280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|121599078|ref|YP_992631.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei SAVP1]
 gi|124383508|ref|YP_001026567.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10229]
 gi|126438629|ref|YP_001058533.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 668]
 gi|126451028|ref|YP_001080148.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10247]
 gi|126454333|ref|YP_001065793.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106a]
 gi|134282840|ref|ZP_01769543.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 305]
 gi|167002167|ref|ZP_02267957.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei PRL-20]
 gi|167582296|ref|ZP_02375170.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis TXDOH]
 gi|167621266|ref|ZP_02389897.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis Bt4]
 gi|217423497|ref|ZP_03454998.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 576]
 gi|226196210|ref|ZP_03791795.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pakistan 9]
 gi|237811787|ref|YP_002896238.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei MSHR346]
 gi|238562776|ref|ZP_00439864.2| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei GB8 horse 4]
 gi|242315800|ref|ZP_04814816.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106b]
 gi|254177845|ref|ZP_04884500.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei ATCC 10399]
 gi|254180195|ref|ZP_04886794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1655]
 gi|254197520|ref|ZP_04903942.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei S13]
 gi|254199458|ref|ZP_04905824.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei FMH]
 gi|254205772|ref|ZP_04912124.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei JHU]
 gi|254260613|ref|ZP_04951667.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710a]
 gi|254298030|ref|ZP_04965483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 406e]
 gi|254358828|ref|ZP_04975101.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei 2002721280]
 gi|257139516|ref|ZP_05587778.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|52209417|emb|CAH35362.1| phosphate regulon two-component system response regulator
           [Burkholderia pseudomallei K96243]
 gi|52428953|gb|AAU49546.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
           23344]
 gi|76580365|gb|ABA49840.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710b]
 gi|83653200|gb|ABC37263.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|121227888|gb|ABM50406.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei SAVP1]
 gi|124291528|gb|ABN00797.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10229]
 gi|126218122|gb|ABN81628.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 668]
 gi|126227975|gb|ABN91515.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106a]
 gi|126243898|gb|ABO06991.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10247]
 gi|134245926|gb|EBA46017.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 305]
 gi|147749054|gb|EDK56128.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei FMH]
 gi|147753215|gb|EDK60280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei JHU]
 gi|148027955|gb|EDK85976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei 2002721280]
 gi|157807759|gb|EDO84929.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 406e]
 gi|160698884|gb|EDP88854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei ATCC 10399]
 gi|169654261|gb|EDS86954.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei S13]
 gi|184210735|gb|EDU07778.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1655]
 gi|217393355|gb|EEC33376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 576]
 gi|225931796|gb|EEH27798.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pakistan 9]
 gi|237506644|gb|ACQ98962.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei MSHR346]
 gi|238521934|gb|EEP85382.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei GB8 horse 4]
 gi|242139039|gb|EES25441.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106b]
 gi|243062154|gb|EES44340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei PRL-20]
 gi|254219302|gb|EET08686.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710a]
          Length = 233

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 76  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R +    RV +     E++ ++ P    E R+L + M +  +  ++TQ+   ++G  D
Sbjct: 136 GLRLDPATHRVAAQSDGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 190

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 191 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|310644837|ref|YP_003949596.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309249788|gb|ADO59355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa SC2]
          Length = 243

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 26/225 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  +   DG+S            +  + ++    I   L+  G   +++ R +R 
Sbjct: 22  LEKEGYEVICAFDGIS-----------AVDIAVKQQPDLILLDLMLPGMDGMDVCREVRG 70

Query: 70  HS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSN 123
           H  Q P+I ++        +   + G DD V KP   RE+LARV A  RR +        
Sbjct: 71  HQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQRGVAGTPE 130

Query: 124 NRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +R +        G +   +D       G    L  RE  +L Y+  N GK + +  +  A
Sbjct: 131 SRPQEDKQGLRVGDLFFDADMYTAYKNGTPLDLTHREYELLYYMAKNAGKVMTREHLLQA 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++G F+   +   V+  I +LR+K+  N    + + ++R LGY +
Sbjct: 191 VWG-FEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGYIV 234


>gi|229102593|ref|ZP_04233297.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228680820|gb|EEL34993.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 228

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 71  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 131 IQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 190 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 225


>gi|224825947|ref|ZP_03699050.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224601584|gb|EEG07764.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 241

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 98/211 (46%), Gaps = 14/211 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD A ++D  +   G  G +++   ++ E +  L  + R D+  ++  +   GE  
Sbjct: 6   ILVVDDDAKLRDLLVRYLGQQGYTVDTLPDARELQRKLARN-RPDLMVLDVMM--PGEDG 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + R +RA  + VP+I ++        +   + G DD + KP + RE++AR+ ++ RR 
Sbjct: 63  LAVVRRLRAQGEMVPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELVARIQSVLRRH 122

Query: 120 KVSNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +   A         E GP  +    R+   Q +V  L   E  +L  L ++  + + +
Sbjct: 123 NATPALAARHEEGDAIEFGPFTLHLGRRELTHQDKVVTLTSAEYAVLAVLASHPRRPMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            Q+     G  +    +  ++ HIS+LR+ L
Sbjct: 183 EQLMEMALGKGNGESLDRSIDVHISRLRRAL 213


>gi|254523237|ref|ZP_05135292.1| DNA-binding response regulator [Stenotrophomonas sp. SKA14]
 gi|219720828|gb|EED39353.1| DNA-binding response regulator [Stenotrophomonas sp. SKA14]
          Length = 227

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA-ETG 129
            P++ +S    +   +    +G DD + KP    E+ ARV  + RR +   SN      G
Sbjct: 74  TPVLMLSALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRRQQPASNETVLRVG 133

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            +++    R     G    L   E ++LEYLM N G+ + +  +F  ++G  FD     N
Sbjct: 134 DLQLDLLARTAHRGGRSLSLLPTEFKLLEYLMRNAGQVLTRMMLFEEVWGYHFDPGT--N 191

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ HI +LR+KL        + + R  GY +
Sbjct: 192 LIDVHIGRLRRKLDQADAPSLIRTVRGSGYVL 223


>gi|188589302|ref|YP_001921842.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|251780126|ref|ZP_04823046.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188499583|gb|ACD52719.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|243084441|gb|EES50331.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 228

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 94/214 (43%), Gaps = 34/214 (15%)

Query: 14  GYIALFGDDG---------VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           GYI +  DD          +  E F +++ E   ++    D   IE  L+      + +P
Sbjct: 3   GYILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLD-----IMMP 57

Query: 65  RI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           +I        IR    +P+I IS        +    +G DD + KP +  E++ARV +  
Sbjct: 58  QIDGIEACMRIRKDKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQL 117

Query: 117 RRLKV----SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR +     SNN+    E G + + +D R   V  +   L  +E  ILE L  N+G  ++
Sbjct: 118 RRYQKYNTGSNNQKVIIEIGDLTINTDTRQIWVGEKEVRLTPKEFDILELLARNKGIVLS 177

Query: 170 KTQIFSAIYG--LFDEAVEENVVESHISKLRKKL 201
             +I+  ++    F     +N V  HI+ LR+K+
Sbjct: 178 IRKIYEEVWKEEFFK---SDNTVTVHITNLREKI 208


>gi|123443179|ref|YP_001007153.1| two-component regulatory protein response regulator KdpE [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090140|emb|CAL13003.1| two-component regulatory protein response regulator KdpE [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 175

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 20/159 (12%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I +S   S +  +   D+G DD ++KP    E+LARV    RR    +  +
Sbjct: 17  LRQWSAIPIIVLSARSSEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGGS 73

Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  P+  F+D       R     G    L   E R+L  L+AN GK + + Q+ + ++G 
Sbjct: 74  QESPLVNFADISVDLINRQVTRAGIDLHLTPIEFRLLSALLANAGKVITQRQLLNQVWG- 132

Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216
                  N VE H   LR     LR KL  DP   +  +
Sbjct: 133 ------PNYVE-HSHYLRIYMGHLRQKLESDPTRPQHLI 164


>gi|148543356|ref|YP_001270726.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152766|ref|YP_001841107.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|194467516|ref|ZP_03073503.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227364430|ref|ZP_03848520.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325683629|ref|ZP_08163145.1| response regulator [Lactobacillus reuteri MM4-1A]
 gi|148530390|gb|ABQ82389.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224110|dbj|BAG24627.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|194454552|gb|EDX43449.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227070523|gb|EEI08856.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977979|gb|EGC14930.1| response regulator [Lactobacillus reuteri MM4-1A]
          Length = 229

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 9/142 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR +  V+N+
Sbjct: 67  VRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQGEVTND 126

Query: 125 RAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179
           + +    GP+ +  D  + + ++G+V  L   E  IL YL+A+   RV +   IF  ++ 
Sbjct: 127 QPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGIL-YLLASHPNRVFSADDIFERVWQ 185

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             +  V    V  H+S LR K+
Sbjct: 186 Q-ESVVSAKTVMVHVSHLRDKI 206


>gi|134299699|ref|YP_001113195.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134052399|gb|ABO50370.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 234

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 100/219 (45%), Gaps = 29/219 (13%)

Query: 10  LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           L K GY  +   DG+ +LE +   E E+         +  ++ + + +          +R
Sbjct: 22  LSKHGYQVVMAQDGIRALEIY---ELEQPDLILLDILLPGVDGYSVCQE---------LR 69

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------IYRRL--- 119
            +S VP+I IS     +  ++  + G DD + KP     ++ARV A      I+RR+   
Sbjct: 70  KYSNVPIIFISCKKDSKDIIEGLELGADDFITKPFDPDVLMARVQASLRRAPIFRRIASS 129

Query: 120 -KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            K+ N +  + G + +     +  + G +  L  +E ++L +L+ +  +  +  Q++  +
Sbjct: 130 RKIVNRQVIKYGNLEIDMANFEVRLDGNLVTLSAKELQLLIFLVQHPNQIFSTEQLYLKV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           +GL D   +   V  HIS +RKK+ +    +P   +R L
Sbjct: 190 WGL-DSIGDNRTVMVHISNIRKKIES----NPSQPERIL 223


>gi|326381575|ref|ZP_08203269.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199822|gb|EGD57002.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 238

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 11/151 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  S   ++ ++       TL     G DD + KP   RE+ AR+ A  RR +
Sbjct: 65  VEVCRRLRTFSDAYVVMLTARADEVDTLVGLSVGADDYITKPFSPRELSARIQARMRRPR 124

Query: 121 VSNNRAET----GPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                 +T     P RVF D      GR+  V GE   L R E  +L  L +  G   ++
Sbjct: 125 TGFTGEQTPVTRAPDRVFGDLSIDVLGREVWVSGEPVHLTRTEFDLLAALSSAPGTVFSR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            ++   ++G  +   ++++V+ HI  +R+KL
Sbjct: 185 ARLIDTVWGP-EWIGDDHLVDVHIGHVRRKL 214


>gi|254796619|ref|YP_003081455.1| DNA-binding response regulator CtrA [Neorickettsia risticii str.
           Illinois]
 gi|254589857|gb|ACT69219.1| DNA-binding response regulator CtrA [Neorickettsia risticii str.
           Illinois]
          Length = 264

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKP-IHHREILARVAAIYRRLKVSN-NRAETG 129
           + P+I  S   S +  +  FD G DD + K  +H  E LAR+ A+ RR    + ++ + G
Sbjct: 76  KTPVIFFSALSSYENRIKAFDFGADDFIAKSELHKGEFLARIRAVLRRCFSHHFSKFKLG 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYL-MANRGKRVAKTQIFSAIYGLFDEAVEEN 188
            + V    +  +++G+V  L  +E  +LE + +  RG  ++K +  S +Y   +E  E+ 
Sbjct: 136 NMLVDFHMQVCKMRGKVVQLTNKEYSMLELMCLHGRGAIISKDKFISHLYS-NNEPTEQK 194

Query: 189 VVESHISKLRKKL 201
           +++    KLR KL
Sbjct: 195 IIDVFACKLRSKL 207


>gi|227485677|ref|ZP_03915993.1| two component response regulator [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236349|gb|EEI86364.1| two component response regulator [Anaerococcus lactolyticus ATCC
           51172]
          Length = 226

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 3/166 (1%)

Query: 57  GEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+   E+ R IR  + ++ +I ++    ++  +   D G  D + KP   +E+ AR+ + 
Sbjct: 56  GKDGFEVLRSIRQFNKEIAIIMLTARSDIEDRVKGLDLGASDYMVKPFALKELDARMRSH 115

Query: 116 YRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            R  K+  +       +   +  R+    G++ PL  +E  ILEYL  N  + ++  ++ 
Sbjct: 116 LRGKKIHQSTVINMSGLSFDTIKREASYGGKIIPLTVKETGILEYLFLNSERFISAEELI 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++    +    N V  H+S LRKKLR+  G + +++    GY I
Sbjct: 176 EHVWDSNADGFS-NTVRVHMSSLRKKLRSACGKNLIENVIGKGYRI 220


>gi|218460387|ref|ZP_03500478.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli Kim 5]
          Length = 218

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 24/190 (12%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRAHSQVPLIGIS 79
           +LE      ++ R    A+ AF  G  + +           LE+ R IR  S +P++ +S
Sbjct: 21  ALERAGLTSTAVRTGTEAMAAFRRGNIDLIILDIGMPDMDGLEVCRQIRKTSGLPILFLS 80

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---------TGP 130
                   +   + G DD V KP   RE++ARV AI +R   S N A           G 
Sbjct: 81  ARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKR---SGNGAAPDRRHAALVAGE 137

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I +   GR       V  +   E  ILE L++  G   ++ Q+  A YG     V +  +
Sbjct: 138 ISLDRHGRTVMFGDSVLGMTALEFAILEALLSRPGMVFSREQLMEAAYGA-GTYVADRTI 196

Query: 191 ESHISKLRKK 200
           +SHI  +R K
Sbjct: 197 DSHIRNIRAK 206


>gi|171910123|ref|ZP_02925593.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 242

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 14/211 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           +  ++DD   +++  +      G  +    ++ +F + L+   RE    +   ++  GE 
Sbjct: 9   LISVVDDHGEIRELVVRYLSQHGFRVTAAQDATDFRQQLE---REKPDLVVLDIMMPGED 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L L R +RA +Q+P+I ++        +   + G DD + KP + RE+LAR+ A+ RR+
Sbjct: 66  GLALCRHLRAETQIPIIFLTAMAEDADRIVGLELGADDYLVKPFNPRELLARIRAVLRRV 125

Query: 120 -KVSNNRAETGPIRV-FSDG----RDPEVQGE---VFPLPRRERRILEYLMANRGKRVAK 170
             +   R+    ++V F D     R  EV G      PL   E R+L   + + GK + +
Sbjct: 126 GTLPEIRSTHQAVQVKFGDKTLDVRRHEVTGPDGVAIPLSTAEFRLLCVFLDHPGKVLNR 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             +     G  +  V +  +++ +S+LR+K+
Sbjct: 186 DALLDLTSG-READVWDRSIDNQVSRLRRKI 215


>gi|158338752|ref|YP_001519929.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308993|gb|ABW30610.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 243

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 8/143 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  + N  
Sbjct: 71  LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVSKNGNSG 130

Query: 127 --ETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +G I V      ++ R      E   L   E  +LE L++  G+  +++ I   ++G
Sbjct: 131 IPSSGVISVHTLKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSDILQEVWG 190

Query: 180 LFDE-AVEENVVESHISKLRKKL 201
              E  V+  VV+ HIS+LR KL
Sbjct: 191 YTPERHVDTRVVDVHISRLRAKL 213


>gi|329923718|ref|ZP_08279113.1| response regulator protein GraR [Paenibacillus sp. HGF5]
 gi|328941084|gb|EGG37386.1| response regulator protein GraR [Paenibacillus sp. HGF5]
          Length = 223

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 7/159 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  S VP++ +S   S    +   + G DD + KP H   + A+V A+ RR      + 
Sbjct: 66  IREISNVPVLFLSSRDSPMDVVMSVNMGGDDYIQKPFHMDVLTAKVNALLRRTYSYSDMQ 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N  E   +    D      + E   L + E  IL+ LM  +G  V + +I   ++   D
Sbjct: 126 SNVFEHEGVVFLPDKGTITYETEQAELTKTEVSILKILMQQKGTVVDRKKIMRHLWQ--D 183

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E+ V+EN +  +I +LRKKL      + + +K+  GY I
Sbjct: 184 ESFVDENTLTVNIVRLRKKLAGVGKENWIVTKKGQGYMI 222


>gi|289550550|ref|YP_003471454.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus lugdunensis HKU09-01]
 gi|289180082|gb|ADC87327.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus lugdunensis HKU09-01]
          Length = 236

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 23/219 (10%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ- 72
           GYI       V+ +G  +LE  E +Q     D+  ++  L  K    +E+ + IR+    
Sbjct: 26  GYIV-----EVAYDGEEALEKVEKVQP----DLIVLDVMLPKKDG--IEVCKTIRSDKNL 74

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-- 130
           VP++ ++        +   + G DD + KP   RE++ARV AI RR +  N  A      
Sbjct: 75  VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQFVNEAANDAANE 134

Query: 131 -------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  IR+  +  +     E+  L  +E  +L YL+  +G+ + +  + ++++  ++ 
Sbjct: 135 EDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREHMLNSVWN-YEF 193

Query: 184 AVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 194 AGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|238795219|ref|ZP_04638804.1| Transcriptional regulatory protein creB [Yersinia intermedia ATCC
           29909]
 gi|238725439|gb|EEQ17008.1| Transcriptional regulatory protein creB [Yersinia intermedia ATCC
           29909]
          Length = 210

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 12/138 (8%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVF 147
           G DD + KP   RE+ ARV  + RRL+ S+  A +  +  F D      G       +  
Sbjct: 75  GADDYIAKPFSPREVSARVRTVLRRLQKSHILAASAAVHQFGDFTLDEAGARVTYHQQPL 134

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L R E  +L+ L+    +  ++ Q+   ++   +E+ ++  V++HI  LR KLR  + +
Sbjct: 135 WLTRYEYLLLKTLLLAPERIFSRQQLMDIVWAQAEES-QDRTVDTHIKTLRSKLR--MAY 191

Query: 208 D---PVDSKRFLGYSIDW 222
           D   P+ + R LGYS+ +
Sbjct: 192 DEESPIRTHRGLGYSLSY 209


>gi|229088212|ref|ZP_04220152.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
 gi|228695108|gb|EEL48144.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
          Length = 232

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 16/158 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAQYHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLRRFLM 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV +N++    G + ++ + R   V  E   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVEDNKSVLAIGGVVIYPEQRTVSVYEEQIELTPKEFDIL-YLLASHPKKVYSVEN 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-----RNKL 205
           IF  ++   D     N V  HI  LRKKL     +NKL
Sbjct: 183 IFQQVWA-EDYYEGRNTVMVHIRTLRKKLGEDKRKNKL 219


>gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
 gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
          Length = 230

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R+H    P++ ++    +   +   D+G DD + KP    E+LARV ++ RR 
Sbjct: 60  LEVCRHLRSHGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRA 119

Query: 120 KVS----NNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +++AE     +++  D RD         L R E  +L+ LM N  + ++++ I
Sbjct: 120 AAEASGPSSQAEITFEDLKLNPDTRDVVRGNRTISLTRTEFALLQLLMTNPRRVLSRSTI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              ++G +D     N +E +I  LR+K   +     + + R +GY
Sbjct: 180 LEEVWG-YDFPTSGNALEVYIGYLRRKTEQEGEPRLIHTVRGVGY 223


>gi|160896195|ref|YP_001561777.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361779|gb|ABX33392.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 256

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 4/167 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G ++++  R+  A    P + ++   +L   +   ++G DD + KP    E++ARV A
Sbjct: 86  GDGLQLVQ--RLRAAGRSTPCLMLTARDALSDRVGGLEAGADDYLTKPFPMEELIARVRA 143

Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR  +    A + G I +          G    LP  E +I+  L+   G  V ++ +
Sbjct: 144 LLRRPALVQELAPQLGDISISPQQACMHCAGSAIALPPAELQIMLSLVRKAGATVRRSTL 203

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +A +G+    V  N ++  + +LR+KL        + + R  GY++
Sbjct: 204 EAAAWGM-SSVVTPNALDVALHRLRRKLAAAGSCMEIVNIRGQGYAL 249


>gi|88608551|ref|YP_506128.1| DNA-binding response regulator [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600720|gb|ABD46188.1| DNA-binding response regulator [Neorickettsia sennetsu str.
           Miyayama]
          Length = 265

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKP-IHHREILARVAAIYRRLKVSN-NRAETG 129
           + P+I  S   S +  +  FD G DD + K  +H  E LAR+ A+ RR    + ++ + G
Sbjct: 76  KTPVIFFSALSSYENRIKAFDFGADDFIAKSELHKGEFLARIRAVLRRCFSHHFSKFKLG 135

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYL-MANRGKRVAKTQIFSAIYGLFDEAVEEN 188
            + V    +  +++G+V  L  +E  +LE + +  RG  ++K +  S +Y   +E  E+ 
Sbjct: 136 NMLVDFHMQVCKMRGKVVQLTNKEYSMLELMCLHGRGAIISKDKFISHLYS-NNEPTEQK 194

Query: 189 VVESHISKLRKKL 201
           +++    KLR KL
Sbjct: 195 IIDVFACKLRSKL 207


>gi|330977887|gb|EGH77790.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 229

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +   +   NS E  E    S R D+  ++  +       +
Sbjct: 4   VLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEVEALSGRHDIVVLDIMM--PRISGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IRA SQVP+I ++        +   + G DD V KP    E++AR+ AI RR++ 
Sbjct: 62  EVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRA 121

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  + G + ++   R+   QG    L   E  +LE L  + G+ V+K  +  
Sbjct: 122 VPVIETVRDVIQAGELMLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSM 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
              G    A  +  ++ HIS +R KL  RN      + S R LGY +
Sbjct: 182 NALG-RPLARYDRSIDVHISSIRHKLGPRND-NQSWIQSVRNLGYML 226


>gi|327470410|gb|EGF15866.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
          Length = 234

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            D+G DD + KP   +E+LAR+ ++ RR+   + N  + G     + G    +      L
Sbjct: 92  LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202
             +E +++E+LM N  K ++  +IF  ++    D+ ++E  V  +IS LR+KL+
Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWSKEEDKDLDEGFVWIYISYLRQKLK 204


>gi|311070491|ref|YP_003975414.1| two-component response regulator YxdK [Bacillus atrophaeus 1942]
 gi|310871008|gb|ADP34483.1| two-component response regulator (YxdK) [Bacillus atrophaeus 1942]
          Length = 229

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 7/162 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR HS  P+I IS        +   ++G DD + KP  +  +LA++ +  RR      
Sbjct: 65  RQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYA 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K      E   +++F +  +   Q +   L ++E ++LE L+    K   + ++    +
Sbjct: 125 AKQGEKVLEYEGVQLFVERFELRYQDQKCELSKKESKLLEVLLERGEKVTGRDRLMEKTW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D  V++N +  +I++LRKKLR+      ++S R  GY +
Sbjct: 185 DT-DIFVDDNTLNVYITRLRKKLRDLHVPISIESVRGEGYQL 225


>gi|299538494|ref|ZP_07051777.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
 gi|298726081|gb|EFI66673.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 23/172 (13%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR     P+I ++        ++ F  G DD + KP    E++ARV A  RR  + N 
Sbjct: 64  RKIRETLNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQIRRFTLYNL 123

Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++          + +  + R   +      L   E  IL YL ANRG  ++  Q+F  I
Sbjct: 124 SSKQQEDIIDFAGLVINKNTRQVFLNERPISLTPTEFAILWYLCANRGTVISSEQLFQEI 183

Query: 178 YG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221
           +G   F      N V  HI  LR+K++     D  ++ +++      GY+I+
Sbjct: 184 WGEKYFS---SNNTVMVHIRHLREKMK-----DAAENPKYIKTVWGVGYTIE 227


>gi|319761447|ref|YP_004125384.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317116008|gb|ADU98496.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 236

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R  RA +  VP+I  S   S    +   + G DD + KP    E++AR
Sbjct: 56  LMLPGVDGLEICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVAR 115

Query: 112 VAAIYRRLK--VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164
           V A+ RR +    N + E G + +     DP      V G+   L  RE  +L +     
Sbjct: 116 VRALLRRSEALARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQP 175

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           GK  ++  + + ++G   +   E+ V +HI++LR K+      +P D KR L
Sbjct: 176 GKVFSRLDLLNQVWGYRHDGY-EHTVNTHINRLRIKIER----NPADPKRIL 222


>gi|296133628|ref|YP_003640875.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032206|gb|ADG82974.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 236

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 23/221 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY  +   DG           +  L+ + RE    I   ++  G   LE+ R ++ 
Sbjct: 23  LEKEGYTVITAGDG-----------KIALEQTFREKPDLIVLDIMLPGVDGLEVCRTLQR 71

Query: 70  HSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
             +  LI I    +    +D     + G DD + KP   RE++AR+ A  RR    + S+
Sbjct: 72  DKETQLIPIIMLTAKGEEIDKVLGLELGADDYMTKPFSPRELVARIKARLRRNFKAQQSD 131

Query: 124 NRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N+ +      G +++  +     + G+      +E  +L+ L +N GK   +  +   I+
Sbjct: 132 NQEKENILAIGGLKIDIEKFSVYLNGQKVDFTPKEFELLKLLASNPGKVFTREYLLEKIW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D A +   V+ HI  +RKK+  + G   V++ R +GY 
Sbjct: 192 G-YDFAGDTRTVDVHIRHIRKKIEPEQGEKFVETVRGVGYK 231


>gi|239833775|ref|ZP_04682103.1| two component response regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239821838|gb|EEQ93407.1| two component response regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 314

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           EE     +R  V  I   ++  G+  +E+ + IR HS+VP+I ++        +   + G
Sbjct: 114 EEMHDVMSRTAVDLIILDVMLPGKSGIEICQDIRRHSRVPIIMLTAIADAADKILGLEIG 173

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            DD + KP   RE+LAR+ A+ RRL+  NNRA + P+
Sbjct: 174 ADDYLAKPFDPRELLARIRAVLRRLE--NNRAPSRPV 208


>gi|258651433|ref|YP_003200589.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258554658|gb|ACV77600.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 240

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 99/228 (43%), Gaps = 31/228 (13%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L +DG+  L   DG +  G         L  S   D+  ++  L   G   L++ R +
Sbjct: 21  RYLTRDGHDVLEAADGPT--GLR-------LVRSHHPDLIVLDLML--PGMDGLQVCREV 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S VP+I ++        +   + G DD V KP   RE+  RV+ + +R +     A 
Sbjct: 70  RRTSTVPVIMLTALGQESDRVVGLEFGADDYVVKPFSPRELALRVSRVLQRSRGPAAPAA 129

Query: 128 TGPIRVFS-DG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            G   V S DG        R     G+   L  RE  +L +L+A+ G+  ++T++   ++
Sbjct: 130 PGSAEVTSADGELSANALSRTARRGGDELALTSREFDLLHFLLAHPGQVFSRTELMEQVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
           G      +++ V  H+ +LR+K+      DP    R      +GY +D
Sbjct: 190 GW--SFGDQSTVTVHVRRLREKVEP----DPTKPTRIVTVWGVGYRLD 231


>gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 235

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R +  +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 61  LEVARQVRKNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQG 120

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N+  E G + +  +      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 121 APSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 181 HLLQTVWG-YDYFGDVRTVDVTVRRLREKVED 211


>gi|225728859|ref|YP_002735123.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113533|emb|CAR41322.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 236

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 13/155 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                V+   A  G        +++  D    +  G+   L  RE  +L +L  + G+ +
Sbjct: 121 TIESAVAEENASAGSQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214


>gi|194476927|ref|YP_002049106.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
 gi|171191934|gb|ACB42896.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
          Length = 268

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 13/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   + 
Sbjct: 87  RRLRAESCVPIIFLSALDTISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRGSA 146

Query: 125 RAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            AE             G + V ++ R     G    L   E  +LE L    G+ V + +
Sbjct: 147 TAEPCDIPAGQGVLRVGDLVVDTNRRQVTRGGNRIALTYTEFSLLELLFREPGRVVPRAE 206

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201
           I   ++G     A +  VV+ ++++LR KL
Sbjct: 207 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 236


>gi|251794820|ref|YP_003009551.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542446|gb|ACS99464.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 224

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           +R    +PL+ ++        +  F+ G DD V KP    E++ RV A+ +R ++++++ 
Sbjct: 67  LRESFDMPLLMLTAKGETAHKVKGFELGADDYVVKPFDPPELIVRVKALLKRYRIASSQV 126

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E G + +          GE   LP +E  +L  L +  GK   +  +   ++G+  E  
Sbjct: 127 VELGGLSMNRSDFQLVANGEKILLPPKEFELLFKLASYPGKTFTREHLIEQLWGMNYEG- 185

Query: 186 EENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           +E  V+ HI +LR++   +  GF  V + R LGY ++
Sbjct: 186 DERTVDVHIKRLRERFPEEDFGFRIV-TIRGLGYRLE 221


>gi|168704577|ref|ZP_02736854.1| two component transcriptional regulator, winged helix family
           protein [Gemmata obscuriglobus UQM 2246]
          Length = 228

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           GE  L L + +RA  +  P++ ++   ++   +   D+G DD + KP    E+LARV A+
Sbjct: 58  GEDGLSLLKRLRAAGRFTPVLMLTARDAVPDRVAGLDAGADDYLTKPFAFDELLARVRAL 117

Query: 116 YRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR   V+        +RV    +  E  G    L  +E  +L   + + G+ + +T+I+
Sbjct: 118 ARRPAAVTGTTLSHADVRVDLATQRAERAGHKLDLTAKEYALLVLFLRHPGQVLTRTRIY 177

Query: 175 SAIYGLFDEAVE--ENVVESHISKLRKKL 201
             ++   DE  +   N +E H+  LR+KL
Sbjct: 178 EHVW---DERYDGTSNTLEVHVKDLRRKL 203


>gi|218779275|ref|YP_002430593.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760659|gb|ACL03125.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 228

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R++++    S +P+I ++        +   + G DD V KP   R I+ARV A+ R
Sbjct: 63  LEVARVLKSKPNTSTIPIIMLTAKGDESDVVRGLELGADDYVTKPFSPRVIIARVRAVMR 122

Query: 118 RLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R     +      E   I +    R+  V G+   L   E  IL YL    G    ++QI
Sbjct: 123 RNAAEPDDGIQAREVHGIGIHPGRREVAVNGKQIKLTMSEFDILHYLAQRPGWVFTRSQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
            SA+ G    AV +  V+  I  LRKKL
Sbjct: 183 VSAVRG-EGFAVTDRSVDVQIVGLRKKL 209


>gi|158321721|ref|YP_001514228.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141920|gb|ABW20232.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           IR  S VP+I +S        +   + G DD + KP +  E+LARV +  RR        
Sbjct: 67  IRETSSVPIIFLSAKSEDMDKILGLNIGADDYITKPFNPMELLARVNSNLRRYTNYANNN 126

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  N  + G I +  D ++  V G+   +   E RIL  LM+N  +  +  +I+  ++
Sbjct: 127 TPVKENMIKIGGIELKDDSKELIVDGKSIKITPLEYRILYLLMSNPNRVFSIEEIYEKVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
              + A   + V  HI ++R+K+
Sbjct: 187 K--EPAYNPDTVTVHIRRIREKI 207


>gi|146328950|ref|YP_001209795.1| two component phosphate response regulator PhoB [Dichelobacter
           nodosus VCS1703A]
 gi|146232420|gb|ABQ13398.1| two component phosphate response regulator PhoB [Dichelobacter
           nodosus VCS1703A]
          Length = 229

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 4/169 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G K+LE  R I     +P+I ++     +  +   D G DD + KP    E+ +R+ A
Sbjct: 58  GSGIKILEDLRKIETLRYLPVIMLTARADERDIIKGLDYGADDYLTKPFSMAELQSRIKA 117

Query: 115 IYRRLKVSNNRAETGPIR-VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++RR+  S           +  +    EV  Q ++  L RRE ++LE  + +  K +++ 
Sbjct: 118 LFRRMPESEEEQSCLSWEDITMNLLTYEVFFQDKLLKLNRREFQLLECFLRHPNKVLSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+    +   +E + +  V+  I +LRK   N     PV S R +GY +
Sbjct: 178 QLLDFAWQ-GEEDIGDRAVDVAIRRLRKAFENIDEQLPVMSIRGIGYRL 225


>gi|92112763|ref|YP_572691.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91795853|gb|ABE57992.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 223

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 12/134 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146
           F +G DD V KP    E+L R+ A+ RR   S+  A    + G + + +      + G  
Sbjct: 91  FSAGADDYVTKPFETAEVLFRLRALVRR---SHGHAHPILKLGELALDTHTGSVTLAGRP 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  +E R+L YL+    + V +T++   +Y   D   + NV++  IS+LR+KL N+  
Sbjct: 148 ITLTAQESRLLAYLLHAAPRIVTRTELSEHVYD-RDHEPDSNVIDVQISRLRRKLGNQ-- 204

Query: 207 FDPVDSKRFLGYSI 220
              +++ R  GY +
Sbjct: 205 --RIETLRGQGYRL 216


>gi|83747754|ref|ZP_00944788.1| PhoB [Ralstonia solanacearum UW551]
 gi|207724004|ref|YP_002254402.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum MolK2]
 gi|207742914|ref|YP_002259306.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum IPO1609]
 gi|83725526|gb|EAP72670.1| PhoB [Ralstonia solanacearum UW551]
 gi|206589212|emb|CAQ36174.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum MolK2]
 gi|206594309|emb|CAQ61236.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum IPO1609]
          Length = 237

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 17/164 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
           Q+P+I ++     Q  +   D G DD V KP   +E+LAR+ A+ RR         + ++
Sbjct: 76  QIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135

Query: 123 NNRAETGPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             R +    RV +   + E  ++ ++ P    E R+L +LM +  +  +++Q+   ++G 
Sbjct: 136 GLRLDPATHRVTALNSESENPIKLDLGP---TEFRLLHFLMTHPERVHSRSQLLDQVWG- 191

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D   VEE  V+ HI +LR  L        +++ R  GY +  N
Sbjct: 192 -DHVFVEERTVDVHIKRLRAALAPGGYSTMIETVRGSGYRLARN 234


>gi|91976489|ref|YP_569148.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91682945|gb|ABE39247.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 241

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 23/162 (14%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           ++ P + +S    +   +    +G DD + KP    E+LARV  + RR       AE   
Sbjct: 86  NRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRR---HGGPAEETS 142

Query: 131 IRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
            RV     D E+          GE   L  RE R+LEYLM + G+ V +T +   ++   
Sbjct: 143 YRVG----DLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYH 198

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           FD   + NV++ HIS+LR K+    GFD   + + R  GY I
Sbjct: 199 FDP--QTNVIDVHISRLRAKIDK--GFDRPLLHTIRGAGYMI 236


>gi|329736414|gb|EGG72683.1| putative KDP operon transcriptional regulatory protein KdpE
           [Staphylococcus epidermidis VCU045]
          Length = 237

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 4/144 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYR 117
           L+L + IR +   P+I IS     +T +   D G +D + KP +  E+ AR+     + +
Sbjct: 62  LKLIQQIREYVDTPIIVISARTEEETIVKALDYGANDYMTKPFNIDELKARIRVALRVTK 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +L    +  E GP+++  + +   +  +   L   E ++L+ L  + GK +    +  A+
Sbjct: 122 KLDTVQDNFENGPLKIDFNAKMVYINNQSIHLTPYEFQLLDILSQHVGKVLTYQILLKAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G  ++  E   +  H++ LRKKL
Sbjct: 182 FGYVNKC-EMASLRVHMASLRKKL 204


>gi|330816276|ref|YP_004359981.1| Response regulator [Burkholderia gladioli BSR3]
 gi|327368669|gb|AEA60025.1| Response regulator [Burkholderia gladioli BSR3]
          Length = 233

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 17/160 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 76  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--L 180
             R +    RV +     E++ ++ P    E R+L + M +  +  ++TQ+   ++G  +
Sbjct: 136 GLRLDPATHRVAAAAEGNEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWGDHV 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F   VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 193 F---VEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 234

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 13/148 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           +I + + Q+P+I ++   S    +   + G DD + KP   +E+++R+ AI RR      
Sbjct: 67  QIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTNRVVD 126

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             K+      TG   V  D +   VQ  G+   L   E R+L++L  N  + +++ QI  
Sbjct: 127 LKKIVPELPVTG---VTIDFKRLTVQKNGQPVALTPNEFRLLKFLFQNSNQVLSRDQILE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++G ++   +  +V+ HIS LR KL +
Sbjct: 184 QVWG-YEYGGQTRIVDMHISHLRDKLED 210


>gi|257440628|ref|ZP_05616383.1| KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium prausnitzii A2-165]
 gi|257196951|gb|EEU95235.1| KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium prausnitzii A2-165]
          Length = 236

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 15/151 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  S +P+I +S        ++  D+G DD + KP    E+LAR+    RRL 
Sbjct: 63  IEVIRSVRTWSNLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLN 122

Query: 121 ------VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +++     GP+++ FS G     + E+   P  E ++L  L  N GK +  T I
Sbjct: 123 LLASDGINSPVFVNGPLKIDFSAGCVWLSENELHLTP-IEYKLLCVLAHNVGKVLTHTSI 181

Query: 174 FSAIYGLFDEAVEENVVES---HISKLRKKL 201
              ++G    + +EN + S   +++ LRKKL
Sbjct: 182 TQKVWG----STQENDIASLRVYMASLRKKL 208


>gi|187777143|ref|ZP_02993616.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
 gi|187774071|gb|EDU37873.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
          Length = 227

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 7/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120
           IR    +P+I +S        +     G DD ++KP    E+LARV A  RR K      
Sbjct: 68  IREKFTMPIIFLSAKGEELDKIQGLTVGADDYISKPFGSMELLARVKAQLRRYKKFNSIT 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +S N  E   + +  D  +  V+GE   L  +E  ILE L  N+G   +  +++  ++  
Sbjct: 128 ISKNIIEIEDLVINVDTHEVNVRGENIKLTSKEFNILECLARNKGIVFSVEKLYETVWK- 186

Query: 181 FDEAVEENVVESHISKLRKKL 201
               V +  V  HI+ +R+K+
Sbjct: 187 EKFVVSDTSVVVHITNIRQKI 207


>gi|306831853|ref|ZP_07465009.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304426051|gb|EFM29167.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 230

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 92/204 (45%), Gaps = 10/204 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   +++   +   + G+ +E F +   ++ L     E+   +   ++  G   +E+  
Sbjct: 8   DDEKNIRELIASFLREQGLDVEIFET--GDQLLLRFMEEEADVVILDVMMPGTNGVEIAT 65

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
           ++R  S VP+I ++   S    +  F +G DD   KP    ++  RV AI  R   S   
Sbjct: 66  MLRKRSDVPIILLTARDSDADFVKGFSAGADDYFTKPFSPLKLSLRVKAILARQPQSQEV 125

Query: 126 AE-TGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           A+ T  +  +         R      +V  L   E  +L+ LM +  + V++ ++   I+
Sbjct: 126 AKGTSDVVTYEALTLSEKERTVTYDNQVLKLTNTEFELLKMLMNHAEEAVSRDELLHHIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLR 202
           G ++ ++E  V +  I +LRKKLR
Sbjct: 186 G-YESSIETRVTDDTIKRLRKKLR 208


>gi|262369330|ref|ZP_06062658.1| two-component system response regulatory system response regulator
           [Acinetobacter johnsonii SH046]
 gi|262315398|gb|EEY96437.1| two-component system response regulatory system response regulator
           [Acinetobacter johnsonii SH046]
          Length = 238

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L + R +R H   P++ ++        +   + G DD V KP+  R +LAR+ A+ 
Sbjct: 63  GADGLTICREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALL 122

Query: 117 RRLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR   +       R E   + + + GR   + GE+      E  +L  L +N G+ +++ 
Sbjct: 123 RRTDKAPEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
            IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 183 DIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 221


>gi|260886778|ref|ZP_05898041.1| DNA-binding response regulator DltR [Selenomonas sputigena ATCC
           35185]
 gi|330839408|ref|YP_004413988.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260863377|gb|EEX77877.1| DNA-binding response regulator DltR [Selenomonas sputigena ATCC
           35185]
 gi|329747172|gb|AEC00529.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 222

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 4/162 (2%)

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           V  L  +  A    P++ ++    +   ++  D+G DD + KP    E+LAR+ ++ RR 
Sbjct: 60  VTALKELRAAGDTTPVLLLTAKAEVGDRIEGLDAGADDYLPKPFAMGELLARLRSLTRRA 119

Query: 120 KVSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +V    AE     V  D G+          L  +E ++++ LM N GK V  ++I+  ++
Sbjct: 120 EVYAP-AELSLGSVTLDVGKQELAAKSAVRLASKETQLMQLLMMNAGKCVTTSEIYERVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +E    ++V  +IS LR+KL+   G   +  ++   Y+I
Sbjct: 179 QGAEEGA--DIVWVYISYLRQKLKAIHGDVAIRGEQGGSYTI 218


>gi|255010333|ref|ZP_05282459.1| putative two component system response regulator [Bacteroides
           fragilis 3_1_12]
 gi|313148131|ref|ZP_07810324.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
 gi|313136898|gb|EFR54258.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 18/175 (10%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  ++ + H +  +I IS   SL   +   + G DD + KP H  E+ AR+ +
Sbjct: 57  GNGLNLLE--QLKKMHKRENVIIISAKDSLDDKVLGLELGADDYLPKPFHLAELNARIKS 114

Query: 115 IYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           + RR        ++++N R      +VF D ++ E       L R+E  IL Y     G+
Sbjct: 115 VIRRQRRDGEMDIRLANIRIVPDTFQVFVDDKEIE-------LNRKEYDILLYFANRPGR 167

Query: 167 RVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V K  +  +++G   D+    + + + I  LRKKL++      + +    GY +
Sbjct: 168 LVNKNTLAESVWGDHIDQVDNFDFIYAQIKNLRKKLKDAGALAELKAVYGFGYKM 222


>gi|227543824|ref|ZP_03973873.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908892|ref|ZP_07126355.1| response regulator [Lactobacillus reuteri SD2112]
 gi|227186201|gb|EEI66272.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894299|gb|EFK87657.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 237

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 9/142 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR +  V+N+
Sbjct: 75  VRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQGEVTND 134

Query: 125 RAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179
           + +    GP+ +  D  + + ++G+V  L   E  IL YL+A+   RV +   IF  ++ 
Sbjct: 135 QPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGIL-YLLASHPNRVFSADDIFERVWQ 193

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             +  V    V  H+S LR K+
Sbjct: 194 Q-ESVVSAKTVMVHVSHLRDKI 214


>gi|255691704|ref|ZP_05415379.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacteroides finegoldii DSM 17565]
 gi|260622643|gb|EEX45514.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacteroides finegoldii DSM 17565]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 18/158 (11%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  R+   H +  +I IS   SL+  +   + G DD + KP H  E+ AR+ +
Sbjct: 57  GSGLDLLE--RLKALHKRENVIIISAKDSLEDKVLGLELGADDYLPKPFHLVELNARIKS 114

Query: 115 IYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           + RR        ++  N R E    RVF +  D EV+     L R+E  IL Y +   G+
Sbjct: 115 VIRRHQHDGEIDIRQGNVRIEPDKYRVFVN--DQEVE-----LNRKEYDILLYFINRPGR 167

Query: 167 RVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
            + K  +  +++G   D+    + + + I  LRKKL++
Sbjct: 168 LINKNTLAESVWGDHIDQVDNFDFIYAQIKNLRKKLKD 205


>gi|223983749|ref|ZP_03633920.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
 gi|223964295|gb|EEF68636.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
          Length = 230

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S+VP++ I+   + Q  +   D G DD + KP   +E++AR+ A+ RR +
Sbjct: 61  FEVCQCIRKVSRVPILMITAKTADQDRVMGLDIGADDYILKPFSCQEVMARIRAVLRRTE 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +A+   G + +        + G    L ++E  +L  L ++ G+  ++  +   ++
Sbjct: 121 DNPEQADFVYGNLMIQESRNLVSLDGNPINLTKKEMELLVLLASHPGRVYSREILLDLVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G   E+ +   V+S + +LR KL
Sbjct: 181 GYSGESYDR-AVDSCVKRLRAKL 202


>gi|167646385|ref|YP_001684048.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167348815|gb|ABZ71550.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 234

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 4/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI 131
           VP++ ++    L   +   D G DD + KP    E+ AR  A+ RR           G I
Sbjct: 76  VPIMILTARGGLGEKIAGLDVGADDYLVKPFDIAELAARCRALLRRPGACLGVVLSAGNI 135

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            + +  R   V G    +  RE  +LE+L+   G+ V K  +   +Y + D  V  N +E
Sbjct: 136 ALDTAARSLVVAGASVSITPRELALLEHLLRRAGQVVPKASLEDQLYAM-DREVTPNALE 194

Query: 192 SHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             +S+LRK+L    G D V  +   +GY++
Sbjct: 195 VAVSRLRKRLAGA-GADVVLRTAHGVGYAL 223


>gi|90580521|ref|ZP_01236327.1| DNA-binding response regulator [Vibrio angustum S14]
 gi|90438430|gb|EAS63615.1| DNA-binding response regulator [Vibrio angustum S14]
          Length = 235

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 7/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  + +R  ++ P+I IS        +   D+G +D + KP    E+LAR+  +  RL 
Sbjct: 64  LEFTKELRTWTETPIIVISARDKEADKVQALDAGANDYLTKPFGSEELLARI-RVALRLH 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   E    R      D  +Q     GE   L  +E +IL  L  N GK +   QI  
Sbjct: 123 SHSTATEVSQYRFGDVLLDMAMQTVMFNGESIKLTPKEYKILTLLAKNMGKVLTHKQILK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G  +     + V  HI++LR K+
Sbjct: 183 EVWG-GNYTEHAHYVRIHIAQLRHKI 207


>gi|78224573|ref|YP_386320.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78195828|gb|ABB33595.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 224

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +  P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR    + +     
Sbjct: 71  NATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRR----SEQDRGAE 126

Query: 131 IRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDE 183
           IR F+D R   V  +V+       L  +E  +LEY M N  + + +T I   ++   FD 
Sbjct: 127 IR-FADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWDYTFDS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               N+++ +++ LRKK+  +     + + R +GY
Sbjct: 186 FT--NIIDVYVNYLRKKIDREADKKLIHTVRGVGY 218


>gi|330829011|ref|YP_004391963.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328804147|gb|AEB49346.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 242

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 10/145 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VS 122
           IRA    P+I ++        L     G DD V KP +  E++ARV A+ RR +     +
Sbjct: 79  IRARGDTPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRTQAVKPAT 138

Query: 123 NNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N    G  ++  +  +  +    Q +V  L   E ++L  LM    +  ++ ++ +  +
Sbjct: 139 ANVLRVGQFQIDLESHEASIFRDDQQQVLELTLTEFKLLASLMRAPKRVFSRAELLT--H 196

Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203
            L +   +E  V+SHISKLRKKL  
Sbjct: 197 CLPEGDTQERTVDSHISKLRKKLET 221


>gi|324326021|gb|ADY21281.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 68  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 128 IQVGNVLLNRKTFEVTTGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 187 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 222


>gi|304398245|ref|ZP_07380119.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304354111|gb|EFM18484.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 223

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 7/161 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+ R    VP++ ++   +L   +   + G DD + KP    E+ AR+ A+ RR +  
Sbjct: 63  LTRLRRRGQGVPVLLLTARSALDDRVRGLNLGADDYLTKPFELDELEARLRALLRRSQSQ 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + ++++    V  DG    +  E    L  RE  IL  LM   G+ V++  ++   + L 
Sbjct: 123 SAQSQSLGQLVL-DGEGYFLLAEKPLALTPRESSILTTLMQRHGRPVSRQHLYEQTFTLA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           DEA  E+ +E ++ ++RKKL    G D  + + R LGYS++
Sbjct: 182 DEASPES-IELYVHRVRKKLA---GSDVAIVTLRGLGYSLE 218


>gi|293609491|ref|ZP_06691793.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827943|gb|EFF86306.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 231

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           +P++ ++   +L   L  F +G DD + KP    E++ R+ A+ +R   +V++++ +   
Sbjct: 77  IPVLMLTARDTLDDKLKGFTAGTDDYLVKPFDFNELVMRIRALIKRAAGEVTHHKIQIHD 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + S  +     G    LP  + ++L+ LM    K V K ++   ++G  DE  E + +
Sbjct: 137 LILDSSTQTVVRAGNNIELPPIQFKLLKILMRQSPKVVTKQELMMELWG--DEEPESDAL 194

Query: 191 ESHISKLRKKLRNKLGFDP 209
            SHI  LRK +     FDP
Sbjct: 195 RSHIYNLRKMVDKP--FDP 211


>gi|296136175|ref|YP_003643417.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295796297|gb|ADG31087.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 244

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 22/160 (13%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGP 130
           +P+I ++        +   D+G DD + KP   +E+LAR+ A+ RR   +++  + + G 
Sbjct: 79  IPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRRAPQLTAEQVQIGG 138

Query: 131 IRVFSDGRDPEVQGEVFPLPRRER----------RILEYLMANRGKRVAKTQIFSAIYG- 179
           + V     DP  +  +F  P  E           ++L YLMA+  +  ++  +   ++G 
Sbjct: 139 LSV-----DPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRGALLDKVWGD 193

Query: 180 -LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +F   +EE  V+ HI +LR+ L      + V++ R  GY
Sbjct: 194 HVF---IEERTVDVHIKRLREALSPVQCAEMVETVRGAGY 230


>gi|241762014|ref|ZP_04760098.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373480|gb|EER63067.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 196

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 87/172 (50%), Gaps = 8/172 (4%)

Query: 56  KGEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +G   +E+ R +R +   + +P+I ++        +   ++G DD V KP   RE++ARV
Sbjct: 23  EGTSGIEVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARV 82

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAK 170
            A+ RR++ + ++ +     +  D     V+  G    +   E R+L +LM    +  ++
Sbjct: 83  LAVLRRIRPALSKEQLTYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSR 142

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
            ++   I+G  D  +E   V+ HI +LRK L N+ G  D + + R  GY++D
Sbjct: 143 EKLLDYIWGQ-DSDIELRTVDVHIRRLRKAL-NRDGLPDLIRTVRSAGYALD 192


>gi|229196205|ref|ZP_04322954.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228587270|gb|EEK45339.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 68  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 128 IQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ H+++LR+K + +     + + R LGY ++
Sbjct: 187 NERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLE 222


>gi|297560476|ref|YP_003679450.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844924|gb|ADH66944.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 229

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           +R  +  P++ +S        +   D+G DD V KP    E LARV A+ RR    +   
Sbjct: 66  LRGWTSAPILVVSGRTDSVDKVQALDAGADDYVTKPFAIDEFLARVRALTRRGACGDAEP 125

Query: 126 -AETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               G + V    R    +G    E   L   E RILE LM + GK V + ++ + ++G 
Sbjct: 126 LVRLGELTVDLSARTVTREGGSGAEGVRLTPTEWRILEILMRHAGKLVTRQRLLADVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKL 201
            +   +   +  ++S+LRKKL
Sbjct: 185 SEHVTDTGYLRLYVSQLRKKL 205


>gi|228900580|ref|ZP_04064802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228859063|gb|EEN03501.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 77  LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 136

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G +D   
Sbjct: 137 IQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG-YDFEG 195

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 196 NERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLE 231


>gi|167588685|ref|ZP_02381073.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 221

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 7/159 (4%)

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR     
Sbjct: 64  RHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHA 123

Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLF 181
           N   T G + +    R  E+ G    L R+E  +LE ++A+R +R+ +K  + + ++   
Sbjct: 124 NDVLTLGGLTIDRSSRLAELDGRPLSLSRQEFALLE-ILASRPQRIFSKEGLLNQLFSFG 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E    N VE +++++R+KL        + + R +GY I
Sbjct: 183 NEP-SANAVEQYVTRVRRKLHGS--SVEIRTARGMGYQI 218


>gi|161522391|ref|YP_001585320.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221198526|ref|ZP_03571571.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2M]
 gi|221207755|ref|ZP_03580762.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2]
 gi|160345944|gb|ABX19028.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|221172252|gb|EEE04692.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2]
 gi|221180977|gb|EEE13379.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2M]
          Length = 272

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 13/172 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R  RA ++  P+I  S   S    +   + G DD + KP    E++AR
Sbjct: 89  LMLPGVDGLEICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVAR 148

Query: 112 VAAIYRRLK--VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164
           V A+ RR+     ++R + G + V     DP      V G    L  RE  +L +   + 
Sbjct: 149 VKALLRRVDALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHP 208

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           GK  ++  + +A++G   E   E+ V +HI++LR K+      DP +  R L
Sbjct: 209 GKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAEPVRIL 255


>gi|330448271|ref|ZP_08311919.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492462|dbj|GAA06416.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 219

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 106/229 (46%), Gaps = 25/229 (10%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------ 54
           + ++ DDR L  DG +     D ++  G+N L    +   +++ D    EA L+      
Sbjct: 5   LLLVEDDRNLA-DGLL-----DCLTQAGYNCL----YADCASKVDALWKEADLVVLDRQL 54

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
            +G+ +  L   ++    +P+I ++   S+   +   DSG  D + KP    E+LARV  
Sbjct: 55  PEGDSLNYLGAWLK-KKHLPVILLTAMVSINDKVVGLDSGAKDYLTKPFAEEELLARVRV 113

Query: 115 IYR---RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             R       + N  + G I +  + R+  +  E   L R E  +L +L  N G+   + 
Sbjct: 114 HLRGDDDDTAAANIIKVGGIIINQESREVLLGDENITLTRTEFELLVFLSKNAGRVFTRD 173

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   ++G ++       V++HI +LR+KL    G D +++ R +GY +
Sbjct: 174 ELLDQVWG-YNHYPTTRTVDTHILQLRQKLP---GID-IETLRGVGYRM 217


>gi|315924256|ref|ZP_07920480.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622417|gb|EFV02374.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 223

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           L  I +   +VP++ ++   S Q  +   + G DD V KP    E++AR+ A+ RR   +
Sbjct: 63  LKHIRQTGKKVPVLLLTAKDSTQDKVKGLNMGADDYVVKPFETDELIARIRALGRRAGEQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  +   + + +   +  +  +   L  +E ++LE  + N  + +AK  +   I+G 
Sbjct: 123 YADNVIQYADLVLDTTSGELSIGTKKVRLTAKESQMLELFILNPEQTIAKKALLERIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKL 201
            D    EN VE ++  LRKKL
Sbjct: 182 NDGKAAENSVEIYVHYLRKKL 202


>gi|311897138|dbj|BAJ29546.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 12/206 (5%)

Query: 23  GVSLEGFN---SLEFEE--WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLI 76
           G+  EGF    + + EE  WL +    DV  ++  L    G +V    R+  A    P++
Sbjct: 19  GLRAEGFAVDLAHDGEEGLWLATEHDYDVIVLDIMLPRLNGYRVCS--RLRAAGDDTPIL 76

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFS 135
            ++         +  D+G DD ++KP  +  ++AR+ A+ RR  +      E G + +  
Sbjct: 77  MLTAKDGELDEAEALDTGADDFLSKPFSYVVLVARLRALVRRTGRRLPQTLEFGDLAIDP 136

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAVEENVVESHI 194
             R     G    L  RE  +LE L    G  V+K +I  +++   FD   + N+VE HI
Sbjct: 137 ARRTCTRAGVEVRLTTREFAVLECLARAAGGVVSKREILESVWDAAFDG--DPNIVEVHI 194

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S LR+K+        V + R  GY +
Sbjct: 195 SALRRKIDAPFARTSVGTVRGAGYRL 220


>gi|312126506|ref|YP_003991380.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776525|gb|ADQ06011.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 221

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 9/136 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           +P I ++        L  F+ G +D + KP    E++ARV  + RR   + N  E+    
Sbjct: 70  IPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRR---NRNFEESIKLL 126

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +F       V GE   L  +E  +L +L  N+    ++ +I   ++G FD   E 
Sbjct: 127 GGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG-FDFIGET 185

Query: 188 NVVESHISKLRKKLRN 203
             V+ HI +LR+KL++
Sbjct: 186 RTVDVHIKQLREKLKD 201


>gi|294340410|emb|CAZ88791.1| Phosphate regulon transcriptional regulatory protein phoB
           [Thiomonas sp. 3As]
          Length = 244

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 22/160 (13%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGP 130
           +P+I ++        +   D+G DD + KP   +E+LAR+ A+ RR   +++  + + G 
Sbjct: 79  IPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRRAPQLTAEQVQIGG 138

Query: 131 IRVFSDGRDPEVQGEVFPLPRRER----------RILEYLMANRGKRVAKTQIFSAIYG- 179
           + V     DP  +  +F  P  E           ++L YLMA+  +  ++  +   ++G 
Sbjct: 139 LSV-----DPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRGALLDKVWGD 193

Query: 180 -LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +F   +EE  V+ HI +LR+ L      + V++ R  GY
Sbjct: 194 HVF---IEERTVDVHIKRLREALSPVQCAEMVETVRGAGY 230


>gi|228914595|ref|ZP_04078204.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844914|gb|EEM89956.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 232

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP    E+ AR+ ++ RR++V + +A T   GP  +          G++  L 
Sbjct: 98  GADDYIAKPFSPVELTARIQSLLRRIEVHDEKANTITSGPFLLNIIEERLYKSGQLVDLT 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E  IL+YLM    K V++ +I + I+G  +   E  VV+ ++ +LR+K+
Sbjct: 158 PTEYMILQYLMNQASKPVSRDEILNMIWGT-NYVGETKVVDVNMRRLRQKI 207


>gi|210617470|ref|ZP_03291592.1| hypothetical protein CLONEX_03814 [Clostridium nexile DSM 1787]
 gi|210149301|gb|EEA80310.1| hypothetical protein CLONEX_03814 [Clostridium nexile DSM 1787]
          Length = 237

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 73/145 (50%), Gaps = 3/145 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP++ ++     +  ++ F++G DD + KP + + ++ R+ AI RR +  
Sbjct: 72  VSREIRKESKVPIVFLTARDMDEDMIEGFENGADDYITKPFNIKIVIQRIKAILRRCEGD 131

Query: 123 NNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      + G + V  +    +  G++  L   E ++L     N G+ + +  +   ++ 
Sbjct: 132 DTVEKVLQCGNLAVDFESHTVKKHGKLLTLTPTEFKLLHRFCLNPGQVLTRQILLEKLWD 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204
                V+E+ +  +IS+LR K+ ++
Sbjct: 192 QDGNFVDEHTLTINISRLRAKIADE 216


>gi|158425689|ref|YP_001526981.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158332578|dbj|BAF90063.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 233

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 26/227 (11%)

Query: 16  IALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LEL 63
           IAL  DD   L   + +LE E +   +  +  SA++ F     +             +EL
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYRIDTYTDGASALDGFKTNPPDLAILDIKMPRMDGMEL 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R  + +P+I ++        L     G DD + KP   R ++ RV A+ RR+   +
Sbjct: 64  LRRLRQKTDMPVIFLTSKDEEIDELFGLKMGADDFIKKPFSQRLLVERVKAVLRRVGAKD 123

Query: 124 NRA--ETGPIRVFSDG---RDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             A  E    +V   G    DPE      +GE   L   E  IL+ L    G   ++  +
Sbjct: 124 GTAPREVDSAKVLERGLLRMDPERHTCTWKGEPVTLTVTEFLILQALAQRPGVVKSRNAL 183

Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218
             A Y   D+  V++  ++SHI +LRKK ++    FD +++   +GY
Sbjct: 184 MDAAYD--DQVYVDDRTIDSHIKRLRKKFKSADDNFDMIETLYGVGY 228


>gi|160895171|ref|ZP_02075944.1| hypothetical protein CLOL250_02731 [Clostridium sp. L2-50]
 gi|156863205|gb|EDO56636.1| hypothetical protein CLOL250_02731 [Clostridium sp. L2-50]
          Length = 234

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP++ ++   S +  L  +D G DD + KP     + A+  A+ RR K  
Sbjct: 67  ICREMRRTSMVPILFLTARSSERDILLGYDLGCDDYIIKPFSLVTLYAKCKALIRRSKDI 126

Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +   E   G I +        V  +   L  +E  +L  L+ N+ K VA+ ++   ++G 
Sbjct: 127 SRTGELVCGRIHMKPSEYRVLVDSQEIELAPKEFALLRMLLENKNKTVARERLLIGVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +D    +  V++HI K+RK L
Sbjct: 186 YDYDGSDRCVDNHIRKIRKHL 206


>gi|172061615|ref|YP_001809267.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994132|gb|ACB65051.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 242

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 24/170 (14%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+   +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR    
Sbjct: 63  LKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR---- 118

Query: 123 NNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q+  
Sbjct: 119 --GAGGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVD 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
            +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 177 HLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRISTVRGLGYCLE 219


>gi|126439551|ref|YP_001057860.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126219044|gb|ABN82550.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
          Length = 247

 Score = 52.0 bits (123), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       +  L  RE  +LE L+   G+ V+K Q
Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 219


>gi|283788574|ref|YP_003368439.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282952028|emb|CBG91757.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 229

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 14/225 (6%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE- 62
           L++D   + D  I +   +G ++E F     E  L +  R      +  ++  G   +  
Sbjct: 8   LVEDEQGIADTLIYMLQQEGFTVEAF-----ERGLPALERSRHQCPDVAILDVGLPDISG 62

Query: 63  ---LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
                R++  H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+
Sbjct: 63  FELCRRLLERHPSLPVLFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122

Query: 120 K---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           K     +    TG   +     +    G    L R E  +L+ L+ + G+  ++ Q+  +
Sbjct: 123 KKFATPSPVVRTGHFELNELSAEVSWFGTPLSLTRYEFLLLKTLLLSPGRVYSRQQLMES 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 183 VWADAQDTFDRT-VDTHIKTLRAKLRAVNPDLSPINTHRGMGYSL 226


>gi|238854407|ref|ZP_04644749.1| regulatory protein VanR [Lactobacillus jensenii 269-3]
 gi|260665098|ref|ZP_05865948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282931811|ref|ZP_06337296.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|313473003|ref|ZP_07813490.1| DNA-binding response regulator [Lactobacillus jensenii 1153]
 gi|238833029|gb|EEQ25324.1| regulatory protein VanR [Lactobacillus jensenii 269-3]
 gi|239528791|gb|EEQ67792.1| DNA-binding response regulator [Lactobacillus jensenii 1153]
 gi|260561152|gb|EEX27126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281304118|gb|EFA96235.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
          Length = 228

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
           +R  S +P+I +S        +    +G DD V KP +  E++ARV ++ RR   KV+++
Sbjct: 67  LRKDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQKKVTSD 126

Query: 125 RA---ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179
           +    E GP+ +  D  + + + G V  L   E  IL YL+A+   RV +  +IF  ++ 
Sbjct: 127 KPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 186 Q-ESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|254427520|ref|ZP_05041227.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196193689|gb|EDX88648.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 232

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 4/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130
           +P+I ++    L+  L+ FD G DD + KP    E+ ARVAA+ RR +  V+ N  +   
Sbjct: 77  MPVIFMTARDQLEDKLEGFDRGGDDYIVKPFALPELSARVAALVRRQRKEVTANTLQIAD 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    ++    G++  L     RIL  LM    K V++ Q+   ++G  D   + + +
Sbjct: 137 LELDPARQEVRRDGQLLKLSPTAFRILRILMRESPKVVSREQLEHELWG--DLVPDSDAL 194

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            SH+  LRK +        +++   +G+SI
Sbjct: 195 RSHLYNLRKAVDKPFEHALLNTLPGVGFSI 224


>gi|167633009|ref|ZP_02391335.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229601325|ref|YP_002866373.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|167531821|gb|EDR94486.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229265733|gb|ACQ47370.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 230

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP    E+ AR+ ++ RR++V + +A T   GP  +          G++  L 
Sbjct: 96  GADDYIAKPFSPVELTARIQSLLRRIEVHDEKANTITSGPFLLNIIEERLYKSGQLVDLT 155

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E  IL+YLM    K V++ +I + I+G  +   E  VV+ ++ +LR+K+
Sbjct: 156 PTEYMILQYLMNQASKPVSRDEILNMIWGT-NYVGETKVVDVNMRRLRQKI 205


>gi|50086511|ref|YP_048021.1| positive response regulator for the pho regulon,autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
 gi|49532487|emb|CAG70199.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
          Length = 236

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 35/229 (15%)

Query: 11  VKDGYIALFGDD---------GVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGK 56
           +KD YI +  D+          + + GF  L+ E+  Q+       R  +  ++  L G 
Sbjct: 1   MKDDYILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMLPGG 60

Query: 57  GEKVLELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              V    R+ R    S++P+I ++        +   D+G DD + KP   RE+++R+ A
Sbjct: 61  VSGVDLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKA 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDG--RDPEVQ-----GEVFPLPRRERRILEYLMANRGKR 167
           + RR    N     G   + ++G   DP  Q       +  +   E R+L + M +  + 
Sbjct: 121 VLRRANALN-----GDKVIDANGLILDPVSQRVSFGSNILDMGPTEYRLLAFFMTHPERA 175

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
             + Q+   ++G  +  +E+  ++ HI +LRK L      +P  + RF+
Sbjct: 176 YTRAQLLDQVWG-GNVYIEDRTIDVHIRRLRKVL------EPFGADRFV 217


>gi|317502263|ref|ZP_07960436.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089008|ref|ZP_08337915.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896378|gb|EFV18476.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330406460|gb|EGG85973.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 233

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 12/152 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRAKSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKT 171
           +K   ++AE  P  V  +G    +        G    +P +E  +L  L ++  +   + 
Sbjct: 125 IKNEPSQAEK-PKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           Q+   I+G ++   +   V+ HI +LR+KL++
Sbjct: 184 QLLDRIWG-YEYLGDTRTVDVHIKRLREKLKD 214


>gi|311032174|ref|ZP_07710264.1| sensory transduction protein bcer [Bacillus sp. m3-13]
          Length = 231

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 11/144 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R+IR HS+VP+I +S        +     G DD V KP H   ++A++ A  RR+     
Sbjct: 65  RMIRNHSKVPIIFLSSRDHPMDMVMSMQLGADDFVQKPFHFDVLIAKIQATLRRVYQYSA 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  N +A  G    F        +G +  L + E  IL  L+ N+ K V++ ++   I  
Sbjct: 125 EPINLKAWAGATIDFEKNTVSNQKGTI-ELTKNELFILRSLVENKNKIVSRDEL---INR 180

Query: 180 LFDEA--VEENVVESHISKLRKKL 201
           L+D+   V +N +  ++++LRK L
Sbjct: 181 LWDDKRFVSDNTLTVNVNRLRKHL 204


>gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073503|gb|ADJ62902.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 7/153 (4%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAET 128
           + +P+I ++     +  +   + G DD V KP   +E++ARV A+ RR   ++ +   + 
Sbjct: 78  ASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKAPEIGSQALKY 137

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEE 187
             I +  + R   V  +   L + E ++L YL+A+  +  ++ Q+   ++G  D   +EE
Sbjct: 138 RDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVWG--DHTFIEE 195

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V+ HI +LRK L +   +  V + R +GY +
Sbjct: 196 RTVDVHIMRLRKSLGDLAHY--VQTVRGMGYKL 226


>gi|260574724|ref|ZP_05842727.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodobacter sp. SW2]
 gi|259023141|gb|EEW26434.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodobacter sp. SW2]
          Length = 230

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R ++   +   VP++ +S        +   ++G DD V KP    E++ARV A  R
Sbjct: 66  LEVCRRLKTRPETRAVPILMLSARSEEVDRVRGLETGADDYVIKPYSVAELMARVRANLR 125

Query: 118 RLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R + ++     E G IR+  +        +V  L   E R+L   M   G+  ++ Q+  
Sbjct: 126 RARPASVGVVLEHGDIRLDGETHRVYRADKVLKLGPIEFRLLATFMERPGRVFSREQLLD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G  D  VE   V+ H+ +LR+ L    G DP+ + R  GY++
Sbjct: 186 RIWG-RDINVETRTVDVHVGRLRRALCVFGGDDPLRTVRGAGYAL 229


>gi|229099332|ref|ZP_04230263.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229118343|ref|ZP_04247699.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228665173|gb|EEL20659.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228684150|gb|EEL38097.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKYHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ +++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|226194918|ref|ZP_03790509.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|225932723|gb|EEH28719.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
          Length = 231

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 8/150 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IRA S VP++ ++    +   +   ++G DD V KPI  R ++AR  A+ RR++
Sbjct: 58  MEVCRRIRAFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQ 117

Query: 121 ----VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               V    +ET   G + +    R    +GE   L   E  +L  L    G  +++  I
Sbjct: 118 PGASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDI 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              + G+  + ++ + V+S ISKLR++  +
Sbjct: 178 LKQLRGIEFDGIDRS-VDSGISKLRRRFED 206


>gi|184154583|ref|YP_001842923.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|183225927|dbj|BAG26443.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
          Length = 229

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +++ R +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 61  MDVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 120

Query: 120 -KVSNNRAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
            +V+N++ +    GP+ +  D  + + ++G+   L   E  IL YL+A+   RV +   I
Sbjct: 121 NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGIL-YLLASHPNRVFSADDI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K+    G + V ++   +GY ++
Sbjct: 180 FERVWQQ-ESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 227


>gi|197119976|ref|YP_002140403.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197089336|gb|ACH40607.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 224

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-E 127
           A + VP+I +S    +   +   + G DD + KP    E+LAR+  I RR  +  + + +
Sbjct: 69  AGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRYPLQQSESMK 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + +          G    L  +E ++L  ++  RG+ +++T I   I+G+ FD   +
Sbjct: 129 LADLELDLIRHKARRGGRSLDLTVKEFQLLALMLHRRGEVLSRTTISEQIWGINFD--TD 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            NVV+  I +LRKK+ +      + + R +GY +D
Sbjct: 187 TNVVDVAIRRLRKKVDDPFPVKLIQTIRGVGYVLD 221


>gi|254252693|ref|ZP_04946011.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124895302|gb|EAY69182.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 235

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 78  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 137

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R +    RV +     E++ ++ P    E R+L + M +  +  ++TQ+   ++G  D
Sbjct: 138 GLRLDPATHRVAAQSDGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 192

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 193 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|152996350|ref|YP_001341185.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837274|gb|ABR71250.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 227

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 21/174 (12%)

Query: 61  LELPRI--------IRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L LPR+        +RA+ + VP++ ++   +L+  +   D G DD + KP    E+ AR
Sbjct: 58  LGLPRLDGLAVLKQLRANENAVPVLILTARDALEDRVAGLDLGADDYLVKPFDVTELKAR 117

Query: 112 VAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             A+ RR   S  RA        + +F        Q +   L RRE  +L  L++  G  
Sbjct: 118 ARALLRR---SYGRAISEIHYKGLVLFPASHKVTYQDKDVNLTRREYSLLHELVSQPGHV 174

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  +   +YG  D+ VE N +E HI  LRKKL  +L    + + R +GY +D
Sbjct: 175 FTRDVLQQLMYGWGDD-VESNALEVHIHHLRKKLFPEL----IRTIRGIGYVVD 223


>gi|77460466|ref|YP_349973.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384469|gb|ABA75982.1| putative two-component system, response regulator protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 240

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 11/163 (6%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L + R +R     P++ ++        +   D G DD V KP+  R +LAR+
Sbjct: 57  LMLPGEDGLSICRKVRDRYDGPILMLTARTDDADQILGLDLGADDYVCKPVRPRLLLARI 116

Query: 113 AAIYRRLKV------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            A+ RR         +  R + GP+ V +  R+  +      L   E  +L  L++N G+
Sbjct: 117 QALLRRSDTLEAPAGNPRRLQFGPLVVDNALREAWLSDSGIELTSAEFDLLWLLVSNAGR 176

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            +++ +IF+A+ G+  +  ++  ++  IS++R     K+G DP
Sbjct: 177 ILSREEIFTALRGIGYDG-QDRSIDVRISRIRP----KIGDDP 214


>gi|109898568|ref|YP_661823.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109700849|gb|ABG40769.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 240

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 2/148 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   +L   L+ F +G DD + KP   +E++AR+  + RR      R   G + 
Sbjct: 91  TPVLMLTARDTLDNKLEGFQAGSDDYLVKPFAMQELVARIQVLGRRRSGEVKRLSVGDLN 150

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
                R    +     L     +ILE LM    + V + +I  +++G  D+  + N ++ 
Sbjct: 151 FDLTQRIASFKQHPLKLSPTALKILEVLMRASPQTVTRQKIIQSVWG--DDQPDSNSLKV 208

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           HI  LRK+L        +D+   +G++I
Sbjct: 209 HIYHLRKQLDAYEASITLDTVASVGFAI 236


>gi|323357818|ref|YP_004224214.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323274189|dbj|BAJ74334.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 223

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 3/137 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  + VP+I +S        +D  D+G DD V KP    E+LAR+    RR   ++  A
Sbjct: 66  LRGWTSVPIIVVSGRTGSADKVDALDAGADDYVTKPFQIDELLARLRVHARRSAPASGEA 125

Query: 127 ET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               G + V    +     G    L   E R+LE+L  N G  V +  +   I+   ++ 
Sbjct: 126 VVRFGSVEVDLAAKAVLRDGTRVHLTPTEWRMLEFLARNPGSLVTRQTLLKEIWA-SEQV 184

Query: 185 VEENVVESHISKLRKKL 201
            +   +  ++S+LRKKL
Sbjct: 185 ADSGYLRLYMSQLRKKL 201


>gi|319654424|ref|ZP_08008511.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317393923|gb|EFV74674.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 213

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
           G DD + KP    E++AR+ A+ RR    +       + +  D  +   + +   L  +E
Sbjct: 82  GADDYILKPFDEEELVARIEAVLRRTAKEDEFIAFKGLLLKPDSYELYYEDKEVLLTPKE 141

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
             +++ L++NR K  ++  +  +++G F  ++E+  ++SH+  +R+KLR K GF P D
Sbjct: 142 FAMVQLLISNRNKVFSRDHLIESVWG-FGVSIEDRTIDSHVRNIREKLR-KAGF-PAD 196


>gi|301052758|ref|YP_003790969.1| response regulator [Bacillus anthracis CI]
 gi|300374927|gb|ADK03831.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 234

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 19/229 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 7   LLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR   
Sbjct: 65  DICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 119 LKVSN-NRAETGPIRVFSDGR---DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             VSN  +A +     F   R   +  V G V     +  ++L +   N     +K +I+
Sbjct: 125 QAVSNEQKAHSSSFGRFEIDRYSAELTVDGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
             ++G      ++N V  HI KLR+K+      DP     + + R LGY
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQ----DPSKPEYIKTVRGLGY 229


>gi|293606099|ref|ZP_06688464.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292815554|gb|EFF74670.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 237

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 7/166 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L+L +  R  S+ P+I  + +      +   + G DD + KP   RE+ AR+ A+ RR  
Sbjct: 69  LDLLKRYRQRSRRPVIMFTAHGGETDRVLGLEFGADDYLAKPFSPRELKARITAVLRRFE 128

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + S      G + +        +  E   L   E+RILE LM   G+ VA+ QI   
Sbjct: 129 EVPETSRPSLTLGALSLDPASGRACLDAEEVLLTGAEQRILELLMRAPGQVVAREQIGMY 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220
             G   +  + + +++HIS LRKKLR     G   + + R LGY +
Sbjct: 189 ALGRRPDRYDRS-IDTHISTLRKKLRLDQSSGTLSIRNLRGLGYVL 233


>gi|266623444|ref|ZP_06116379.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           hathewayi DSM 13479]
 gi|288864772|gb|EFC97070.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           hathewayi DSM 13479]
          Length = 233

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 14/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S VP+I ++        L     G DD ++KP   +E+L R+ A+ RR        
Sbjct: 75  LRTFSSVPIIFLTAKDEASDKLSGLGLGADDYISKPFMPQELLLRIYAVLRR-----TYK 129

Query: 127 ETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           E  P+ V      D    EV    EV  L  +E  +LE L  N GK V    +  A++G 
Sbjct: 130 EDSPLLVLDGCTIDFSRAEVHKGSEVISLTAKEHTLLETLARNAGKIVTVDTLCEALWG- 188

Query: 181 FDEAV-EENVVESHISKLRKKLRN 203
            D     EN + +H+ ++R+K+  
Sbjct: 189 -DNPFGYENSLNAHVRRVREKIET 211


>gi|257865841|ref|ZP_05645494.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257872176|ref|ZP_05651829.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
 gi|257799775|gb|EEV28827.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257806340|gb|EEV35162.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
          Length = 225

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 4/147 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L +IIR     P+I ++        +     G DD + KP    E++ARV A  RR  
Sbjct: 61  FDLCKIIRKKHHYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRST 120

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             N    N+     + +  + R   +Q E   L   E  IL+ LM  +G+ V+  ++F  
Sbjct: 121 QYNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           ++G        N +  H+  LR+K+ +
Sbjct: 181 VWGEKYYTSSNNTIMVHVRNLREKMHD 207


>gi|302879220|ref|YP_003847784.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302582009|gb|ADL56020.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 234

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 16/166 (9%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
           D++ ++  + GK    +++   IRA   +P++ ++        +   + G DD V KP  
Sbjct: 53  DIAVLDVMMPGKSG--IDVLVQIRAQGAMPVLMLTARGDDADRIIGLELGADDYVPKPCT 110

Query: 105 HREILARVAAIYRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
            RE+ AR+ AI RR       +S++    G + ++ + R  E  G+   L   E  +LE 
Sbjct: 111 PRELTARIRAILRRSSGAESALSSSTVIAGVLSIWPEQRRAEWAGKPLELTSTEFNLLEV 170

Query: 160 LMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
           L  N G+ V+K+++     G     FD +     ++ H+S +R+KL
Sbjct: 171 LARNAGQVVSKSELSEQALGRPLARFDRS-----IDVHLSSIRRKL 211


>gi|239637303|ref|ZP_04678290.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|239597140|gb|EEQ79650.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|330685295|gb|EGG96956.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU121]
          Length = 233

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 18/175 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +E+ R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  
Sbjct: 58  GRDGMEVCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117

Query: 117 RR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           RR        +  + N      I ++ D    + +G+   L  RE  +  YL  + G+ +
Sbjct: 118 RRHYSQPAQEVNDATNEISIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVM 177

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            +  +   ++G +D   +   V+  I +LR+K+ +    DP     + ++R +GY
Sbjct: 178 TREHLLQTVWG-YDYFGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227


>gi|256851884|ref|ZP_05557272.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661855|ref|ZP_05862765.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934455|ref|ZP_06339712.1| transcriptional regulatory protein DltR [Lactobacillus jensenii
           208-1]
 gi|297205509|ref|ZP_06922905.1| DNA-binding response regulator [Lactobacillus jensenii JV-V16]
 gi|256615842|gb|EEU21031.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547324|gb|EEX23304.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301467|gb|EFA93754.1| transcriptional regulatory protein DltR [Lactobacillus jensenii
           208-1]
 gi|297150087|gb|EFH30384.1| DNA-binding response regulator [Lactobacillus jensenii JV-V16]
          Length = 223

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG-EVFPL 149
            D G DD + KP   +E+LAR+ +  RR + S    +     +F D  + E        L
Sbjct: 91  LDDGADDYLTKPFSLKELLARLRSKERR-EDSYTTKKVQLANLFLDVENQEASSRNSVRL 149

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
             +E  +L+YL+ N+ K+++   IF+ ++   DE  +E++V  ++S LR+KL+
Sbjct: 150 SNKETELLQYLLLNKEKKLSTQAIFTHVWKDSDE--DEDIVWIYVSYLREKLK 200


>gi|261340522|ref|ZP_05968380.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC
           35316]
 gi|288317617|gb|EFC56555.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC
           35316]
          Length = 240

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 6/153 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   L L R IR  S VP++ ++        L   + G DD + KP   RE++ARV
Sbjct: 62  LMLPGTDGLTLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121

Query: 113 AAIYRRLKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             I RR +         AE+ P+ V         + ++  L   E R+L+ L    GK  
Sbjct: 122 KTILRRCRPQRELQVLDAES-PLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++ Q+ + +Y  +   V +  ++SHI  LR+KL
Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212


>gi|254511481|ref|ZP_05123548.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium KLH11]
 gi|221535192|gb|EEE38180.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium KLH11]
          Length = 229

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--RAETGP 130
           +P+I +S        +   ++G DD V KP    E++ARV    RR++ +    R E   
Sbjct: 80  IPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRRVRPATVGIRLEFDD 139

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I + S+        +   L   E R+L   M   G+  ++ Q+   ++G  D  V+   V
Sbjct: 140 IILDSETHKVSRDDKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG-RDIYVDTRTV 198

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + HI +LRK L    G DPV + R  GY++
Sbjct: 199 DVHIGRLRKALTQHGGEDPVRTVRGAGYAL 228


>gi|254188385|ref|ZP_04894896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157936064|gb|EDO91734.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 235

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 78  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 137

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R +    RV +     E++ ++ P    E R+L + M +  +  ++TQ+   ++G  D
Sbjct: 138 GLRLDPATHRVAAQSDGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 192

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 193 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|330828446|ref|YP_004391398.1| putative transcriptional regulator [Aeromonas veronii B565]
 gi|328803582|gb|AEB48781.1| Putative transcriptional regulator [Aeromonas veronii B565]
          Length = 215

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 102/217 (47%), Gaps = 26/217 (11%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L ++GY  L+ D   + E       ++WL +    D+  ++  +  +G+ +  LP+ +
Sbjct: 19  RYLTREGYRCLWCDTLTAAE-------QQWLAA----DLVLLDRTM-PEGDALDWLPQWL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
            A   +P+I ++    +   +   D+G  D + KP  H E+LAR+ A  R+L        
Sbjct: 67  -ARKALPVIVLTARVEVSDRVAGLDAGARDYLTKPFSHDELLARIRAQLRQLGDGTQAVG 125

Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             +  P R+ +  +D EV          E  +L  L+   G+ +++ +I + ++G +   
Sbjct: 126 GLQLHPARMQASWQDAEVS-----FTPTEFALLTLLVRMAGRVLSREEILNRVWG-YQAF 179

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                V++HI +LR+KL        +++ R +GY ++
Sbjct: 180 PSTRTVDTHILQLRQKLPGL----AIETVRGIGYRLE 212


>gi|257432065|ref|ZP_05608428.1| two-component sensor response regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257282944|gb|EEV13076.1| two-component sensor response regulator [Staphylococcus aureus
           subsp. aureus E1410]
          Length = 221

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP+I IS        +     G DD + KP +    +A++ A+ RR   L V+N
Sbjct: 66  IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +        +  D      Q +   L   E +IL+ L  N  K V++T +    +   + 
Sbjct: 126 DSLTVKGCTLILDEAKVVYQEQSIQLSLTELQILKLLFQNEDKYVSRTALIEKCWE-SEN 184

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            +++N +  ++++LRKKL N +G  D + +K+ + Y +
Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVRYKV 221


>gi|261823721|ref|YP_003261827.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|261607734|gb|ACX90220.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 220

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 5/202 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +LI+D  L+ DG  A     G +++ F   +       +A  D   ++  L G  G  +
Sbjct: 3   ILLIEDDRLIGDGLKAGLTKLGFTIDWFTEGKAGAAALKAAPYDAVVLDLSLPGMDGMDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R  +A    P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  LRQWR--QAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  T G + +    R   +  E   L  RE  +LE  + N  + + + Q+   +YG
Sbjct: 121 GQLQPELTHGSVSLEPGSRSVTLNCEPLILKSRELALLELFLLNPNRVLTRAQLEEKLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            +D+ V  N VE HI  LRKKL
Sbjct: 181 -WDDDVSSNAVEVHIHHLRKKL 201


>gi|240143855|ref|ZP_04742456.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257204143|gb|EEV02428.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 195

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  EVCREIRETSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRRSGK 124

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +    G I +        V G    L  +E  +L Y M N G  +++ +I + ++
Sbjct: 125 APEEGKLLSIGGIVIDQTAHTVTVDGRQIELSFKEFELLTYFMENEGIALSREKILNHVW 184


>gi|170757250|ref|YP_001780246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122462|gb|ACA46298.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 227

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R I     +P+I ++    +   +   + G DD + KP + +E+L RV    RR+ 
Sbjct: 62  FELCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVN 121

Query: 121 VSNNRAE------TGPIRVFSDGR-----DPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
               +++         ++V  +GR     D EV+     L  +E  +LE+ + NR    +
Sbjct: 122 KYKEKSDEEFIYINKFVKVNLEGRIVFKDDKEVK-----LKPQEYELLEFFVKNRNIVFS 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  + + ++G FD   E   V+ H+ +LR KL  +     +D+   +GY
Sbjct: 177 REILLNKVWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTAFGIGY 224


>gi|196047257|ref|ZP_03114472.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225863933|ref|YP_002749311.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196021882|gb|EDX60574.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225788837|gb|ACO29054.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 229

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP    E+ AR+ ++ RR++V + +A T   GP  +          G++  L 
Sbjct: 95  GADDYIAKPFSPVELTARIQSLLRRIEVHDEKAHTITSGPFLLNIIEERLYKSGQLVDLT 154

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E  IL+YLM    K V++ +I + I+G  +   E  VV+ ++ +LR+K+
Sbjct: 155 PTEYMILQYLMNQASKPVSRDEILNMIWGT-NYVGETKVVDVNMRRLRQKI 204


>gi|134096807|ref|YP_001102468.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909430|emb|CAL99542.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 219

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 13/166 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL R IR  S VP++ +S        +   ++G DD V KP     ++AR+ ++ RRL+
Sbjct: 58  IELCRRIRGCSHVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRRLR 117

Query: 121 VSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A    +R F       D  +    G   PL   E R++    A  G  + ++ + 
Sbjct: 118 --REPAPASAVRTFGDLEVDLDSLEVRRAGRSVPLTPTELRLVLEFAAQPGVVLTRSALL 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +    +  VV+ H+    ++LR K+G + V++ R  GY +
Sbjct: 176 ERVWD-YAWGGDTRVVDVHV----QRLRAKIGRERVETVRGFGYKL 216


>gi|42782234|ref|NP_979481.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987]
 gi|42738159|gb|AAS42089.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987]
          Length = 226

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 17/197 (8%)

Query: 13  DGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           DGY  +  +DG + LE F + + E          VS I   ++        + R IR  S
Sbjct: 24  DGYDVITAEDGQIGLELFAAHDHE----------VSLIILDIMLPVMDGWSICRRIRKSS 73

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----RLKVSNNRAE 127
            VP+I ++       TL  F+ G DD V KP     +LAR   +++     L+  +    
Sbjct: 74  NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPAILLARAKRLFKDTNQNLQFQDCIHL 133

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G IR+    R   + G+       E  IL+ LM ++ + + + Q+ + I+G +D   ++
Sbjct: 134 CG-IRLDKSARSVSIDGQKIDFTHTEYEILQSLMEHKEQVLTREQLITNIWG-YDYDGDD 191

Query: 188 NVVESHISKLRKKLRNK 204
             + +H+  +R KL  K
Sbjct: 192 KTLTAHMRNVRLKLGEK 208


>gi|89069576|ref|ZP_01156920.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola granulosus HTCC2516]
 gi|89044911|gb|EAR51001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola granulosus HTCC2516]
          Length = 230

 Score = 52.0 bits (123), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 11/136 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD-GRDPEVQ-----G 144
            ++G DD V KP    E++ARV    RR++ S      G +  F D   D E        
Sbjct: 99  LETGADDYVVKPYSVSELMARVRTQLRRVRPST----VGQVLTFEDFVLDAETHRVTRAD 154

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           +   L   E R+L   M   G+  ++ Q+   ++G  D  V+   V+ HI +LRK L   
Sbjct: 155 KPLKLGPTEFRLLSTFMEKPGRVWSRDQLLDRVWG-RDIYVDTRTVDVHIGRLRKALTAH 213

Query: 205 LGFDPVDSKRFLGYSI 220
            G DPV + R  GY++
Sbjct: 214 GGSDPVRTVRGAGYAL 229


>gi|317484883|ref|ZP_07943773.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316923865|gb|EFV45061.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 228

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 9/132 (6%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
           F+ G DD V KP + RE+L R+ AI RR  +  SN       + V        V G+   
Sbjct: 98  FELGADDYVVKPFNIRELLLRIRAILRRQVMVESNPVLTRHGVSVDPAAHKVTVLGQDVE 157

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-- 206
           L   E R++E L+ N G+   + ++ +A++G   E      V++HI    ++LRNKLG  
Sbjct: 158 LTATEFRLIEDLLRNAGRVRTREELLAAVWGYQFEGYART-VDTHI----RRLRNKLGDA 212

Query: 207 FDPVDSKRFLGY 218
            + +++ R +GY
Sbjct: 213 AEIIETVRGVGY 224


>gi|308071489|ref|YP_003873094.1| sensory transduction protein bceR [Paenibacillus polymyxa E681]
 gi|305860768|gb|ADM72556.1| Sensory transduction protein bceR [Paenibacillus polymyxa E681]
          Length = 231

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 21/161 (13%)

Query: 65  RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           R+IR+HS VP++ +S  D+P+    +     G DD + KP H   ++A++ A  RR  V 
Sbjct: 65  RMIRSHSNVPILFLSSRDHPT--DMVMSMQLGADDFIQKPFHFDVLIAKLQATLRR--VY 120

Query: 123 NNRAETGPIRVFS----DGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N   E   ++ +     D     V  E     L + E  IL+ L+  + K VA+ ++  +
Sbjct: 121 NYNTEPVFLKTWRGATVDYEKNVVANEAGSIELTKNEIFILKLLIEQKNKIVAREELIKS 180

Query: 177 IYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           ++   DE  V +N +  ++++LRKKL      D +D  RF+
Sbjct: 181 LWD--DERFVSDNTLTVNLNRLRKKL------DELDLGRFI 213


>gi|254459785|ref|ZP_05073201.1| two-component system regulatory protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206676374|gb|EDZ40861.1| two-component system regulatory protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 222

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 4/152 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPI 131
            P+I ++    +   +   D G DD + KP  H E+ AR  A+ RR   S   A+T G +
Sbjct: 73  TPVIVLTARSQVSDRISLLDLGADDYLTKPFDHAELQARCRAVLRRNAGSAQSAQTIGDV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              +      V G    L  RE R+LE L+ ++G+  +K ++   ++  +D+ V EN +E
Sbjct: 133 EFDAVSGLLNVNGNCINLRNRELRLLELLIGSKGQVFSKQKLVDRLFS-YDDDVSENAIE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +I +LRK +        + + R LGY +D++
Sbjct: 192 VYIGRLRKHIEGS--NVQIVTLRGLGYRLDYD 221


>gi|188590060|ref|YP_001921679.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
 gi|188500341|gb|ACD53477.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
          Length = 223

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 94/200 (47%), Gaps = 14/200 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+KDG+      DG           EE L   ++E +  I   ++      LE+   +R 
Sbjct: 22  LLKDGFNIFEASDG-----------EEGLFQFSKEKIDLIILDIMMPKMNGLEMLEKLRE 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAE 127
            S VP+I ++     +  L+ ++ G DD + KP   + ++A+V A+ +R +  + ++   
Sbjct: 71  VSNVPVIFLTARGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKRTREDLDSSIQN 130

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              + V     + +V   +  L  +E  +L YL+ N    +++  I   ++G+ D   + 
Sbjct: 131 FNGLSVNQLSHEVKVNDNIILLSPKEYELLIYLINNESIALSRDNILDNVWGI-DYYGDI 189

Query: 188 NVVESHISKLRKKLRNKLGF 207
             V+++I +LR+KL +K  +
Sbjct: 190 RTVDTNIKRLREKLLDKSSY 209


>gi|158337175|ref|YP_001518350.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158307416|gb|ABW29033.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 253

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAE 127
           + +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ R   R+  +   +E
Sbjct: 75  ADIPILMLTALSQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRTDRIPQAARHSE 134

Query: 128 T---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               GP+ +  +  +     +V  L R E  +L  L+   G+ V+ ++I   ++G +D  
Sbjct: 135 ILSYGPLTLVPERFEVLWVDKVIKLTRLEFELLHCLLQRHGQTVSPSEILQEVWG-YDPN 193

Query: 185 VEENVVESHISKLRKKL 201
            +   +  H+  LR KL
Sbjct: 194 DDIETIRVHVRHLRTKL 210


>gi|152993220|ref|YP_001358941.1| two-component response regulator [Sulfurovum sp. NBC37-1]
 gi|151425081|dbj|BAF72584.1| two-component response regulator [Sulfurovum sp. NBC37-1]
          Length = 230

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA-RVAAIYRRLKVSNNRAETGPIRV 133
           +I   DY   ++   FF  GVDDV+     H +++A RV A  R L       + G + +
Sbjct: 88  MILTDDYRQQES---FFALGVDDVIYNHCEHPDLIAARVLANMRHL--FGTTVDIGKLVI 142

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
               +  E   ++  L  +   IL YL   + +  +K +I +A++    E V +N VE  
Sbjct: 143 DISNKKIEYDEKIVSLNGKTFDILAYLALRKQRVFSKDEIINALWEE-PEYVSDNTVEVA 201

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           I+++RK+L++ LGF  + + R  GY   +
Sbjct: 202 INQIRKRLKSILGFQVIHTVRRRGYKFSY 230


>gi|75907669|ref|YP_321965.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701394|gb|ABA21070.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 224

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 28/221 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L + GYI    +DG         E  EWL S    D+  ++  L       L L R  R 
Sbjct: 20  LSEAGYIVDTAEDG---------EIAEWLISQKDYDLLILDWMLPTISG--LSLCRQYRC 68

Query: 70  HSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LK 120
             +  P++ ++   +    +   D+G DD + KP    E+LARV A+ RR        L+
Sbjct: 69  SGKTAPILMLTARDTTPDKVMGLDAGADDYLVKPADLVELLARVRALARRVPNWQGDSLR 128

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++ +     + V  +    +++ E+ P   RE R+LEYLM +  + + ++QI  A++  
Sbjct: 129 VADLQLHLAYLTVERE----QLKVELSP---REARLLEYLMRHPNQVLTRSQIEEALWEW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E N +   + KLR +L+     + + +   +GY ++
Sbjct: 182 GMEP-ESNALTVLVRKLRHRLQQVDAAEWIRTVYGMGYRLN 221


>gi|44004551|ref|NP_982220.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|190015016|ref|YP_001966750.1| DNA-binding response regulator [Bacillus cereus]
 gi|190015282|ref|YP_001967074.1| DNA-binding response regulator [Bacillus cereus]
 gi|218848201|ref|YP_002455136.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|296506624|ref|YP_003667858.1| DNA-binding response regulator [Bacillus thuringiensis BMB171]
 gi|42741617|gb|AAS45062.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|116584692|gb|ABK00807.1| DNA-binding response regulator [Bacillus cereus]
 gi|116584963|gb|ABK01072.1| DNA-binding response regulator [Bacillus cereus]
 gi|218540252|gb|ACK92648.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|296327211|gb|ADH10138.1| DNA-binding response regulator [Bacillus thuringiensis BMB171]
          Length = 227

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++     Q  +     G DD V KP H  E+LAR+ A+ RR K  +   
Sbjct: 67  IREFSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVLRRTKRHHKIE 126

Query: 127 ETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
             G I  + + R    + G        E  +L   + N      + Q+   I+G   E  
Sbjct: 127 YKGLI--WDEARHTAAMNGNELLFTPIEFSLLGLFLNNLNYVFTREQLIERIWGHASET- 183

Query: 186 EENVVESHISKLRKKLRN 203
           E+  V+SHI  LR+KLR 
Sbjct: 184 EDRTVDSHIRNLREKLRK 201


>gi|333025862|ref|ZP_08453926.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332745714|gb|EGJ76155.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 240

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G  VL L R  R     P++ +++  +    +    +G D+ V+KP    E++AR+  + 
Sbjct: 64  GLSVLHLMR--REQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLI 121

Query: 117 RRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR    + S +    G + +  D  +    G    L   E  +L YLM N  + ++K QI
Sbjct: 122 RRAGAGRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              ++  +D   + NVVE +IS LR+K+    G +P + ++R  GY I
Sbjct: 182 LDRVWS-YDFGGQANVVELYISYLRRKIDR--GREPMIHTRRGAGYLI 226


>gi|257438355|ref|ZP_05614110.1| DNA-binding response regulator [Faecalibacterium prausnitzii
           A2-165]
 gi|257199186|gb|EEU97470.1| DNA-binding response regulator [Faecalibacterium prausnitzii
           A2-165]
          Length = 234

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 13/171 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS---GVDDVVNKPIHHREILARVA 113
           GE    L   IR  S+VP+I ++   S  T +D  +S   G D  + KP +   +LA++A
Sbjct: 70  GENGFALCSKIRTFSEVPIIFVT---SCNTDMDELNSIMLGGDAFITKPYNTAILLAKIA 126

Query: 114 AIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++ ++   +  + +   G   +  +    +  G    L + E +IL YL  N GK  ++ 
Sbjct: 127 SLLKKAYPAQQQEQIVYGDAVLHLESSSLDYNGRSVELTKNELKILYYLFKNGGKICSRG 186

Query: 172 QIFSAIYGLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      L+D    V++N +  +I+++R+KL      D + +K   GY+I
Sbjct: 187 DMIEY---LWDNQLYVDDNTLSVNINRIREKLAGIGLTDFIKTKHRQGYTI 234


>gi|228988340|ref|ZP_04148433.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771405|gb|EEM19878.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 222

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 59  EICRQIRLVKMTPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSN- 117

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 118 CNQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 178 VWG-HNVVVNPNVVDLYIGYVRKKLKCEKKNRYIQTIHGRGYSM 220


>gi|228927067|ref|ZP_04090132.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229121552|ref|ZP_04250779.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228662016|gb|EEL17629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228832574|gb|EEM78146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 232

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP    E+ AR+ ++ RR++V + +A T   GP  +          G++  L 
Sbjct: 98  GADDYIAKPFSPVELTARIQSLLRRIEVHDEKANTITSGPFLLNIIEERLYKSGQLVDLT 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E  IL+YLM    K V++ +I + I+G  +   E  VV+ ++ +LR+K+
Sbjct: 158 PTEYMILQYLMNQASKPVSRDEILNMIWGT-NYVGETKVVDVNMRRLRQKI 207


>gi|256851855|ref|ZP_05557243.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661884|ref|ZP_05862794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282931967|ref|ZP_06337431.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|297205479|ref|ZP_06922875.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615813|gb|EEU21002.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547353|gb|EEX23333.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303909|gb|EFA96047.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|297150057|gb|EFH30354.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 228

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 10/163 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124
           +R  S +P+I +S        +    +G DD V KP +  E++ARV ++ RR   KV+++
Sbjct: 67  LRKDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQKKVTSD 126

Query: 125 RA---ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179
           +    E GP+ +  D  + + + G V  L   E  IL YL+A+   RV +  +IF  ++ 
Sbjct: 127 KPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 186 Q-ESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|209886314|ref|YP_002290171.1| protein PetR [Oligotropha carboxidovorans OM5]
 gi|209874510|gb|ACI94306.1| protein PetR [Oligotropha carboxidovorans OM5]
          Length = 241

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 11/204 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D      G++G  +    S        +    D+  ++  +   GE   
Sbjct: 21  LLLVDDDRRIRDLLSRFLGNEGYRVTTARSAAAARAKLTGLDFDLLILDVMM--PGETGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R +R  SQVP+I ++     ++ ++    G DD V KP   RE+L R+A I +R+  
Sbjct: 79  ELARALRETSQVPIIMLTARHEAESRIEGLQIGADDYVAKPFEPRELLLRIANILKRVAP 138

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +       GP     +  +     EV  L  RER +L  L +  G+ V++  +    
Sbjct: 139 IAVMPVESVAFGPYVYHLERGELRNGDEVIHLTDREREMLRILASAPGETVSRAMLTGN- 197

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
                    E  V+  I++LR+K+
Sbjct: 198 ----GNNGNERAVDVQINRLRRKI 217


>gi|152973508|ref|YP_001338559.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|329999903|ref|ZP_08303567.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
 gi|150958300|gb|ABR80329.1| probable transcriptional regulatory protein(silver resistance)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|328538154|gb|EGF64312.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
          Length = 227

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 104/218 (47%), Gaps = 17/218 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + L + G++    D+G  L G++       L  +A  D+  ++  L    G  ++ + R 
Sbjct: 19  KGLTEAGFVVDHADNG--LTGYH-------LAMTAEYDLVILDIMLPDVNGWDIIRMLR- 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNN 124
             A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR    ++ +
Sbjct: 69  -SAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGNTMITES 127

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183
           + +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++ + FD 
Sbjct: 128 QLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVWDMNFDS 187

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + N ++  + +LR K+ N  G   + + R +GY ++
Sbjct: 188 --DTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLE 223


>gi|147678722|ref|YP_001212937.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274819|dbj|BAF60568.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 240

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 72/172 (41%), Gaps = 19/172 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ R IR+ + VP+I I+              G DD V KP    E++AR  A  RR  
Sbjct: 63  LEICREIRSETDVPIIFITSRDKTMDVAIGLGVGGDDYVKKPFDPLEVVARAKAHLRRHR 122

Query: 119 -LKVSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            L+ +    E   +      ++    R  EV G    L  RE  IL  L  N  +     
Sbjct: 123 QLRAAGGGGEQKEVLDYPGLKIDLTNRTVEVNGLPVTLTAREFDILALLAKNPNRFFGAD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGY 218
           Q+   I+    E+V+   +  HISKLRKK+      DP + K     R  GY
Sbjct: 183 QLMEVIWKT-RESVDHRSLMVHISKLRKKIEE----DPANPKFIISVRGFGY 229


>gi|157371689|ref|YP_001479678.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157323453|gb|ABV42550.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 226

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 17/207 (8%)

Query: 27  EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGFN+   L  +  ++ +   D +A+   ++      +++ R +R  S++P+I ++    
Sbjct: 23  EGFNATLVLTGKAGVEGALSGDYTAMILDIMLPDMSGIDVLRDVRKKSRMPIIMLTAKGD 82

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRVFSDG 137
               +   + G DD + KP + RE++AR+ A+ RR     +  +       G + +    
Sbjct: 83  NIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDERPDEVDDEIAINFGELTLNPST 142

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R  E +G+ F L   E  +LE L+    + V+K ++     G   EA + + V+ HIS +
Sbjct: 143 RSSEWRGKAFDLTASEFNLLELLLRAPERVVSKDELSEKGLGRPREAYDRS-VDVHISNI 201

Query: 198 RKKL----RNKLGFDPVDSKRFLGYSI 220
           R+KL     N L  + V   R +GY I
Sbjct: 202 RQKLGALTDNALSIETV---RSIGYRI 225


>gi|186475652|ref|YP_001857122.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192111|gb|ACC70076.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 233

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 76  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVAIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--L 180
             + +    RV +  +  E++ ++ P    E R+L + M +  +  ++TQ+   ++G  +
Sbjct: 136 GLKLDPATHRVAAHAQGSEIKLDLGP---TEFRLLHFFMTHPERVHSRTQLLDQVWGDHV 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F   VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 193 F---VEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|126698685|ref|YP_001087582.1| two-component response regulator [Clostridium difficile 630]
 gi|115250122|emb|CAJ67943.1| Two-component response regulator, Tn1549-like,CTn4-Orf26
           [Clostridium difficile]
          Length = 230

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 13/144 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR  + +P++  +      + +    +G DD + KP    E++AR+ ++ RR    N   
Sbjct: 67  IRKENSLPILMFTSKNDSASKVRGLRAGADDYLTKPFDMDELIARIISLIRRYTRFNQQD 126

Query: 124 ---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
               + E   +++  + R    +   F LP +E  +L Y   N+GK + K QI+  ++  
Sbjct: 127 GISQQLEFDGLKIDIENRSVTTENGTFELPPKEFDLLLYCAKNQGKILTKQQIYEEVWRE 186

Query: 180 --LFDEAVEENVVESHISKLRKKL 201
              +D++   N++ + IS+LRKKL
Sbjct: 187 EYFYDDS---NIM-AIISRLRKKL 206


>gi|295815579|gb|ADG36299.1| SilR [Morganella sp. RP-42]
          Length = 226

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 104/218 (47%), Gaps = 17/218 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + L + G++    D+G  L G++       L  +A  D+  ++  L    G  ++ + R 
Sbjct: 18  KGLTEAGFVVDHADNG--LTGYH-------LAMTAEYDLVILDIMLPDVNGWDIIRMLR- 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNN 124
             A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR    ++ +
Sbjct: 68  -SAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGNTMITES 126

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183
           + +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++ + FD 
Sbjct: 127 QLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVWDMSFDS 186

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + N ++  + +LR K+ N  G   + + R +GY ++
Sbjct: 187 --DTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLE 222


>gi|257875469|ref|ZP_05655122.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
 gi|257809635|gb|EEV38455.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
          Length = 225

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 4/147 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L +IIR     P+I ++        +     G DD + KP    E++ARV A  RR  
Sbjct: 61  FDLCKIIRKKHHYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRST 120

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             N    N+     + +  + R   +Q E   L   E  IL+ LM  +G+ V+  ++F  
Sbjct: 121 QYNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           ++G        N +  H+  LR+K+ +
Sbjct: 181 VWGEKYYTSSNNTIMVHVRNLREKMHD 207


>gi|228920689|ref|ZP_04084032.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838990|gb|EEM84288.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 234

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 77  LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVMRVKALLKRYQITVSQS 136

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G +D   
Sbjct: 137 IQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG-YDFEG 195

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 196 NERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLE 231


>gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
 gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
          Length = 242

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR  
Sbjct: 73  IELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYT 132

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++V  N+     + +    R   + GE   L + E  IL  + A + +     +
Sbjct: 133 YFNQNAIQVMENKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAAKNRVFTIEE 192

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           I+ +++   + A E  N V  HI++LR K+
Sbjct: 193 IYESVWN--ERAYESNNTVMVHIARLRNKI 220


>gi|124026776|ref|YP_001015891.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123961844|gb|ABM76627.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 246

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 13/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA S VP+I ++   ++   +   D G DD + KP   +E+ AR+A I RR+  +  
Sbjct: 65  RRIRAESCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRVGPAPT 124

Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             E             G + V ++ R     GE   L   E  +LE L  + G+ V + +
Sbjct: 125 IDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVPRAE 184

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201
           I   ++G     A +  VV+ ++++LR KL
Sbjct: 185 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 214


>gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
          Length = 239

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-----KVSNNRAET 128
           P + ++   SLQ  +     G DD V KP    E++AR+  I RR      +  N R   
Sbjct: 86  PALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGRGVEETRNARLTF 145

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             I +  D  +    GE   L   E  +L Y + N G  ++K +I   ++  +D   + N
Sbjct: 146 ADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDHVW-RYDFGGDVN 204

Query: 189 VVESHISKLRKKL 201
           VVES++S LR+K+
Sbjct: 205 VVESYVSYLRRKI 217


>gi|72383034|ref|YP_292389.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72002884|gb|AAZ58686.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 246

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 13/150 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA S VP+I ++   ++   +   D G DD + KP   +E+ AR+A I RR+  +  
Sbjct: 65  RRIRAESCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRVGPAPT 124

Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             E             G + V ++ R     GE   L   E  +LE L  + G+ V + +
Sbjct: 125 IDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVPRAE 184

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201
           I   ++G     A +  VV+ ++++LR KL
Sbjct: 185 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 214


>gi|68535406|ref|YP_250111.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
 gi|68263005|emb|CAI36493.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
          Length = 233

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 92/203 (45%), Gaps = 6/203 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D         G  +E  ++ +    L ++ + D   ++  + G     L 
Sbjct: 10  LVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGFTL- 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++  A    P + ++    ++  +     G DD V KP    E++ R+  I RR+   
Sbjct: 69  LNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSSE 128

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + +  +      I +  D  +    GE+  L   E ++L YL+ N    ++K +I   ++
Sbjct: 129 DEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDHVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
             +D   + NVVES++S LR+K+
Sbjct: 189 N-YDFGGDGNVVESYVSYLRRKI 210


>gi|85713829|ref|ZP_01044819.1| two component transcriptional regulatory protein, winged-helix
           family protein [Nitrobacter sp. Nb-311A]
 gi|85699733|gb|EAQ37600.1| two component transcriptional regulatory protein, winged-helix
           family protein [Nitrobacter sp. Nb-311A]
          Length = 224

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           +P++ ++    ++  +    SG DD + KP    E++AR+ A+ RR  ++  +  +   +
Sbjct: 73  LPVLVLTARGGVEDRVSGLRSGADDYLVKPFSFDELVARLEALLRRPGQLLGSSLKLANV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              S+GR   V  +   L  RE  +LE L+  +G  V+K  +   I+GL  + V  N VE
Sbjct: 133 TFDSEGRQAFVDMKPQNLSAREIAVLELLLRRKGNVVSKKLLEDQIFGLTGD-VASNAVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++ +LRK+L +      + + R +GY
Sbjct: 192 VYVHRLRKQLLDIGAKVKISTIRGVGY 218


>gi|291541902|emb|CBL15012.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 227

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 10/145 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR   + P+I +S        +  F+ G DD V KP   +E++ RV A+ +R + + N
Sbjct: 65  REIRKFKKTPIIMLSARGEEYDKIHGFELGSDDYVVKPFSPKELMMRVNAVIKRSQGAQN 124

Query: 125 RAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             E     VF+          R   + G+   +  +E  +  Y++ N+G  + + ++ S 
Sbjct: 125 E-ENVKKDVFTYEGLSVDFSARIVTIDGKRIEMTPKEYELFFYMVKNKGLALTREKLISE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G +D   +E  +++HI  LRK L
Sbjct: 184 VWG-YDFFGDERTLDTHIKLLRKSL 207


>gi|229589199|ref|YP_002871318.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229361065|emb|CAY47928.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 232

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 13/161 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G++VL   R  R  S VP++ +S   S    ++  DSG +D V KP   +E LARV A+ 
Sbjct: 66  GQQVL---REFREWSTVPVLVLSVRASEGQKVEALDSGANDYVTKPFGIQEFLARVRALL 122

Query: 117 RRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R+      +      GP+ V    R   + G    L R+E  +L  L  + G+ + + Q+
Sbjct: 123 RQAPAGEAQEAALSFGPLTVDLAYRRVLLDGAEVALTRKEYAVLAQLARHPGRVITQQQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSK 213
              I+G        +  +SH  ++    LR KL  DP   +
Sbjct: 183 LKDIWG------PTHTEDSHYLRIVVGHLRQKLADDPTQPR 217


>gi|209517383|ref|ZP_03266225.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209502150|gb|EEA02164.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 243

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   R +RA  Q +P + ++   +L   +D  +SG DD V KP    E++ARV  + RR 
Sbjct: 61  LTFLRGLRAAGQMIPCLMLTARDALHDRVDGLESGADDYVTKPFAMNELVARVRTLMRRP 120

Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V      +   I V    R          L + E +I+  L+   G+ V    +  A +
Sbjct: 121 PVLAELVLSFADITVDPQQRAMHCGAGTVTLAQAELQIMLCLVKAAGRTVRHAALEHAAW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G+  EAV  N +E  + +LRKKL
Sbjct: 181 GV-GEAVTPNALEVTLHRLRKKL 202


>gi|190574623|ref|YP_001972468.1| putative two-component response regulator protein [Stenotrophomonas
           maltophilia K279a]
 gi|190012545|emb|CAQ46173.1| putative two-component response regulator protein [Stenotrophomonas
           maltophilia K279a]
          Length = 224

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 2/220 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A + DG I      G   +  +         +SA  DV  ++  L       L
Sbjct: 3   ILLIEDDAALADGLIRALQGAGHLCDHLSRGLHAPAALASAPYDVMVLDLSLPDVDGLDL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R+    + +P++ ++    ++  +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 63  -LSRLRNDGATLPVLILTARDGVEDRILGLDRGGDDYLAKPFALGELEARLRALSRRRSD 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G +   S   + +V+G+   L  RE  ++E LM + G+ V K ++F A+Y  +
Sbjct: 122 APAQKRLGRLCFDSIRNEVQVEGQRIELTARELSLVEALMQHPGRTVTKQRLFDALYS-W 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D     +V+E H+S+LR+KL        +   R LGY ++
Sbjct: 181 DHEANLSVIEVHVSRLRRKLEQARAGVGIRMLRGLGYRLE 220


>gi|167839158|ref|ZP_02465935.1| response regulator protein [Burkholderia thailandensis MSMB43]
          Length = 240

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 8/150 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP++ ++    +   +   ++G DD V KPI  R ++ARV A+ RR +
Sbjct: 67  MEVCRRIRGFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARVRALLRRAQ 126

Query: 121 ----VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               V +  +ET   G + +    R    +GE   L   E  +L  L  + G  +++  I
Sbjct: 127 PGASVESPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARSAGTVLSRDDI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              + G+  + ++ + V+S ISKLR++  +
Sbjct: 187 LKQLRGIEFDGLDRS-VDSGISKLRRRFED 215


>gi|187927029|ref|YP_001893374.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|187728783|gb|ACD29947.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 244

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           +P++ ++   ++   +   ++G DD + KP   +E+ AR+ A+ RR      RA+     
Sbjct: 83  IPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAARMHALLRR---QGGRADPLLRH 139

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +    R+    G    L  RE  +L  L+A  GK  +  Q+   +YG +DE V  N
Sbjct: 140 GDVVLNPVTREVLRDGVPVKLSGREFAVLHALLARPGKVWSIAQLQDNLYG-WDEEVGSN 198

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            VE +I  LRKKL + L    + + R +GY I
Sbjct: 199 TVEVYIHALRKKLGSHL----IQNIRGVGYVI 226


>gi|220930052|ref|YP_002506961.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220000380|gb|ACL76981.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 234

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 16/214 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V+ DD+ +V+   I L  +    L GFN    +E ++  A++ +  +   ++  GE  
Sbjct: 6   ILVIDDDKEIVELIRIYLQNEGYNVLVGFNG---DEGVEILAKQKIHLLILDIMLPGEDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R IR    +P+I +S        +    +G DD + KP +  E++ARV +  RR  
Sbjct: 63  LQICRKIRESYIIPIIMVSAKSCDMDKIMGLGTGADDYLAKPFNPMELMARVKSQLRRSF 122

Query: 121 VSN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             N          N      + +  +     + G +  L   E  IL  L  + GK  + 
Sbjct: 123 YMNTQVLDKQHDENIINICGLSINKNNHTVSLLGNIVDLTPTEYEILLLLAGSPGKVFSV 182

Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRN 203
            +IF +++   F E+   N V  HI ++R+KL +
Sbjct: 183 EKIFESVWKQKFYES--NNTVMVHIWRMREKLES 214


>gi|49473983|ref|YP_032025.1| transcriptional regulator ompR [Bartonella quintana str. Toulouse]
 gi|49239486|emb|CAF25839.1| Transcriptional regulator ompR [Bartonella quintana str. Toulouse]
          Length = 234

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 9/149 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE  ++L   +R    VP++ ++    + + ++  ++G DD + KP   RE+L R+ AI 
Sbjct: 68  GENGIDLTHSLRQTKDVPILMLTALSEIDSRINGLEAGADDYLAKPFDPRELLLRINAIL 127

Query: 117 RR-LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR   ++  + E    GP       R+ +  GEV  L  +E++++     N G  + + +
Sbjct: 128 RRGFPLNQPKIEQIVFGPYIFSISRRELKKGGEVIKLTDKEQKMMVIFAENTGDIIPRHK 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
                +   D  + E  ++  I++LR+K+
Sbjct: 188 -----FATDDSDIGERAIDVQINRLRRKI 211


>gi|302387499|ref|YP_003823321.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198127|gb|ADL05698.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 230

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 7/148 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL ++IR     P+I ++        +     G DD V KP    E++ARV A  RR++
Sbjct: 62  FELCKLIREKYTYPIIMLTSKTEGIDRVTGLSLGADDYVTKPFLPLELVARVKAQLRRVQ 121

Query: 121 ----VSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 NN +ET  +    +     +  + G+   L   E  IL  L  NRGK  +  ++
Sbjct: 122 HYDGKENNTSETLMVMGLFLNKTSHECNLNGKTIKLTPTEFSILWLLCKNRGKVFSADEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
           F  I+G        N V   I  +R+KL
Sbjct: 182 FQQIWGEKYFKNSRNTVMVQIRHIREKL 209


>gi|296161212|ref|ZP_06844021.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295888553|gb|EFG68362.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 212

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 83/169 (49%), Gaps = 18/169 (10%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +RA    P++ ++   +++  ++  + G DD ++KP  + E LAR+ ++ RR   
Sbjct: 50  EVLRRLRAQKHTPVLLLTARDTVEDKVEGLELGADDYLSKPFAYAEFLARIRSLLRRAPR 109

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L ++N   +    RV   G   ++  + F L       L+ L   +G+ + +T I
Sbjct: 110 GVRDVLVIANLEVDLIRRRVHRGGTRIDLTAQEFAL-------LQLLAERQGEVLTRTFI 162

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S I+ + FD   + NVV+  + ++R K+ N      + + R +GY ++
Sbjct: 163 TSQIWDMNFDS--DTNVVDVAVKRVRAKIDNSFDKKLLHTVRGMGYVLE 209


>gi|229825123|ref|ZP_04451192.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
 gi|229790495|gb|EEP26609.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
          Length = 229

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD  L+  G       DG+ ++  ++  E  E ++S A  D+  ++  L       
Sbjct: 5   ILVVDDEKLIVKGIRFGLEQDGMEVDAAYDGEEALEMVKSCAY-DIILLDLML--PKMNG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            E+ + IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR  
Sbjct: 62  FEVCQQIREFSDVPIIMLTAKGEDIDKIMGLEYGADDYMTKPFNILEVKARIKAILRRNE 121

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +K S  +   G + +  +GR   +      L  +E  +LE L+ +  K  ++ ++ 
Sbjct: 122 KNKVVKESTGKTLYGELGIDFEGRRVYINDNEINLTAKEFDLLELLVKDENKVYSREKLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
             I+G  D   +   V+ HI +LR+K+    G +P  + +K  +GY
Sbjct: 182 DIIWG-SDYPGDVRTVDVHIRRLREKIEETPG-EPRYIHTKWGVGY 225


>gi|228945616|ref|ZP_04107966.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814134|gb|EEM60405.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 232

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP    E+ AR+ ++ RR++V + +A T   GP  +          G++  L 
Sbjct: 98  GADDYIAKPFSPVELTARIQSLLRRIEVHDEKANTITSGPFLLNIVEERLYKSGQLVDLT 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E  IL+YLM    K V++ +I + I+G  +   E  VV+ ++ +LR+K+
Sbjct: 158 PTEYMILQYLMNQASKPVSRDEILNMIWGT-NYVGETKVVDVNMRRLRQKI 207


>gi|229016415|ref|ZP_04173357.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022644|ref|ZP_04179169.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228738653|gb|EEL89124.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744823|gb|EEL94883.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 233

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 18/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 7   LLVDDETAILQLLTTILKKEGFSHITTATSAELALSLTEQNNYDLIILDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR ++
Sbjct: 65  DICPIIRQKTDCPIFFLTAKTSDLDKVSGFSYGADDYITKPFNPLEVVARMKAQLRRHMQ 124

Query: 121 VSNNRAETGPI---RVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S    +T  I   R   D    E  V G V     +  ++L +   N     +K +I+ 
Sbjct: 125 QSVQEQKTHSISFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEEIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
            ++G      ++N V  HI KLR+K+      DP     + + R LGY
Sbjct: 185 KVWGAPAYNGDDNTVMVHIRKLREKIEQ----DPSKPEYIKTVRGLGY 228


>gi|240145644|ref|ZP_04744245.1| KDP operon transcriptional regulatory protein KdpE [Roseburia
           intestinalis L1-82]
 gi|257202265|gb|EEV00550.1| KDP operon transcriptional regulatory protein KdpE [Roseburia
           intestinalis L1-82]
          Length = 267

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           + L +  R  +  P+I +S+  S    ++   +G DD + KP H +E+ AR+ +A+ RR+
Sbjct: 69  ITLIQWFREWTDCPIIILSERSSYLDKVEALYAGADDYMVKPFHEKELAARIFSALRRRI 128

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V ++   E G ++V    R   + G        E RI+E L  N G  V    +   I+
Sbjct: 129 SVGAHTYYEAGNLKVDFTKRQVLLGGTEVHFSPVEYRIIESLALNSGTVVTYQMLLEKIW 188

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G + E     ++  +++ +RKK+
Sbjct: 189 GPYAEQ-NSRILRVNMTNIRKKI 210


>gi|187933165|ref|YP_001886869.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187721318|gb|ACD22539.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 228

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 34/214 (15%)

Query: 14  GYIALFGDDG---------VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           GYI +  DD          +  E F +++ E   ++    D   IE  L+      + +P
Sbjct: 3   GYILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLD-----IMMP 57

Query: 65  RI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           +I        IR    +P+I IS        +    +G DD + KP +  E++ARV +  
Sbjct: 58  QIDGIEACMRIRKDKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQL 117

Query: 117 RRLKV----SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR +     SNN+    E G + + +D R   V      L  +E  ILE L  N+G  ++
Sbjct: 118 RRYQKYNTGSNNQKVIIEIGDLTINTDTRQIWVGENEIRLTPKEFDILELLARNKGIVLS 177

Query: 170 KTQIFSAIYG--LFDEAVEENVVESHISKLRKKL 201
             +I+  ++    F     +N V  HI+ LR+K+
Sbjct: 178 IRKIYEEVWKEEFFK---SDNTVTVHITNLREKI 208


>gi|167746354|ref|ZP_02418481.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
 gi|167654347|gb|EDR98476.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
          Length = 245

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 26/210 (12%)

Query: 28  GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87
            +N LE    L     +D+  +   ++  G   L     IR    +P+I +S        
Sbjct: 43  AYNGLEA---LDVLVEQDIQLLIIDIMMPGMDGLSATMKIRESKNIPIIILSAKTEESDK 99

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS--------NNRAETGPIRVFSDGR 138
           +     G DD V+KP    E++ARV +  RR L++         NNR   G + +  DG+
Sbjct: 100 ILGLSMGADDYVSKPFRPDELIARVKSQLRRYLQLGSKAAGPEDNNRLILGGLTLDLDGK 159

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA--VEENVVESHISK 196
              V GE   +   E +IL  LM + G+  +  +I+  ++   +EA    EN V  HI  
Sbjct: 160 CIYVDGEPVKVTATEFKILNLLMRHPGRVFSAEEIYERVW---EEAAYATENTVMVHI-- 214

Query: 197 LRKKLRNKLGFDPVDSKRF-----LGYSID 221
             +++R K+  DP + K       +GY ++
Sbjct: 215 --RRIREKIEIDPKNPKYLKVVWGIGYKME 242


>gi|49478884|ref|YP_039110.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330440|gb|AAT61086.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 234

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 11/144 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR    N   
Sbjct: 69  VREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKMNGGI 128

Query: 124 -----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N  E G +++        +  +   L  RE  ILE L  N+G  ++  QI+  ++
Sbjct: 129 SAQNENEVEIGDMKINVTTHKVTIADQEVKLTPREFAILELLARNQGMVMSAEQIYERVW 188

Query: 179 GLFDEAVE-ENVVESHISKLRKKL 201
              +EA + +N V  HI K+R+K+
Sbjct: 189 K--EEAFQSDNTVMVHIRKIREKI 210


>gi|56696826|ref|YP_167188.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           pomeroyi DSS-3]
 gi|56678563|gb|AAV95229.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           pomeroyi DSS-3]
          Length = 229

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--RAETGP 130
           +P+I +S        +   ++G DD V KP    E++ARV +  RR++ S    R E   
Sbjct: 80  IPVIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRSQLRRVRPSTVGLRLEYED 139

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I + ++        +   L   E R+L   M   G+  ++ Q+   ++G  D  V+   V
Sbjct: 140 IVLDAETHKVSRSEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG-RDIYVDTRTV 198

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + HI +LRK L    G DPV + R  GY++
Sbjct: 199 DVHIGRLRKALTQHGGDDPVRTVRGAGYAL 228


>gi|332980720|ref|YP_004462161.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698398|gb|AEE95339.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 223

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 4/139 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR     P++ +S        +  F+ GVDD V KP   +E++ RV AI +R + +   +
Sbjct: 67  IRKICDTPVLMLSARGEEYDRIHGFELGVDDYVVKPFSPKELMLRVDAIMKRTRKAETES 126

Query: 127 ETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +       S        E+ G+   L  RE  +L Y++ N+   +++ ++   ++G +D 
Sbjct: 127 DAFIYERLSINFAAHTVEIDGQRIDLSPRESDLLFYMVRNKNIALSRDKLMQEVWG-YDF 185

Query: 184 AVEENVVESHISKLRKKLR 202
             ++  +++H+  LRKKL+
Sbjct: 186 YGDDRTLDTHVKLLRKKLK 204


>gi|329848622|ref|ZP_08263650.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328843685|gb|EGF93254.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 237

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 4/163 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S  P++ ++       T+   ++G DD V KP     +LAR+ A  R+ K 
Sbjct: 65  EVITAVRKFSNTPIVVLTARSDDSETVKALNAGADDYVTKPFRAEILLARIQANLRQGKT 124

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  +  + GP+ +     +  + G +     +E  +LE+ + NRG+ +   QI   ++G
Sbjct: 125 VSEPDAIDNGPVHMDIGRHEVRLNGTLVAFTPKEFALLEFFVRNRGRMLTHKQILKEVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
                 +   +  +I ++R+KL    G    + S+  +GY ++
Sbjct: 185 PA-HTDDTQYLRVYIGQVREKLATVPGLGQSITSESGIGYRME 226


>gi|320451182|ref|YP_004203278.1| two-component response regulator [Thermus scotoductus SA-01]
 gi|320151351|gb|ADW22729.1| two-component response regulator [Thermus scotoductus SA-01]
          Length = 217

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 17/161 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA S+VP++ ++   +++  +     G DD + KP    E+LAR+ A++RR     +R 
Sbjct: 64  IRARSEVPVLMLTALDAVEWRVKGLKEGADDYLVKPYSLSELLARLEALWRR----AHRG 119

Query: 127 ETGP-IRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  P +  + D R    + E F       LP +   +L+  + +  + ++K  +   ++G
Sbjct: 120 KEAPEVLAYKDLRLYPRRMEAFRGERRLSLPPKAFLLLKAFLESPEEVLSKEALMLRVWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E V+   +E H+S LRK L      +P+ + R  GY +
Sbjct: 180 ---EEVDPATLEVHLSLLRKALGEP---NPIQTVRGYGYRL 214


>gi|315638148|ref|ZP_07893330.1| DNA-binding response regulator [Campylobacter upsaliensis JV21]
 gi|315481684|gb|EFU72306.1| DNA-binding response regulator [Campylobacter upsaliensis JV21]
          Length = 223

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 5/144 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IRA S +P+I  S    L   +     G DD + KP   +E+ AR+ ++ RR K
Sbjct: 60  LEVCKEIRAKSHIPIIISSARGDLSDKVMGLQIGADDYLPKPYDPKEMYARIISLVRRSK 119

Query: 121 -VSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  N  E+       D R  E+   G    L   E  ILEYL++  G  +++ Q+ S  
Sbjct: 120 RIEENTKESVNSDFKVDKRRHEISCNGRPLTLTPAEYEILEYLISQHGLSISREQLVSHC 179

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
             L D   +   ++  I +LR K+
Sbjct: 180 KSLRDR--DSKSLDVIIGRLRTKI 201


>gi|312621388|ref|YP_004023001.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201855|gb|ADQ45182.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 221

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 9/136 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           +P I ++        L  F+ G +D + KP    E++ARV  + RR   + N  E+    
Sbjct: 70  IPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRR---NRNFEESIKLL 126

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +F       V GE   L  +E  +L +L  N+    ++ +I   ++G FD   E 
Sbjct: 127 GGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG-FDFIGET 185

Query: 188 NVVESHISKLRKKLRN 203
             V+ HI +LR+KL++
Sbjct: 186 RTVDVHIKQLREKLKD 201


>gi|312888838|ref|ZP_07748401.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311298713|gb|EFQ75819.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 225

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 3/133 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGE-VFP 148
            D G DD + KP    E+ +R+ AI RR   + +     G   +  + R     G  V  
Sbjct: 91  LDLGADDYLPKPFSMLELQSRMQAITRRKFGLKHTTLTLGEFLIDMNDRSISHNGNMVTS 150

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGF 207
           + ++E  ++ YL+ ++ + + + Q+   I+G + ++  + N ++ HI  +RKKL      
Sbjct: 151 ITKKEYDLIAYLILHKNRTLTRPQLSEHIWGSVVNDDYDSNYIDVHIKNIRKKLSAYAQP 210

Query: 208 DPVDSKRFLGYSI 220
           D +++ R LGY I
Sbjct: 211 DWLETVRGLGYKI 223


>gi|253582131|ref|ZP_04859355.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251836480|gb|EES65017.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 220

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 9/162 (5%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK 120
           + R I+ +S VP+I I+   +    +  F+ G DD + KP  ++  LARV  I +     
Sbjct: 63  ICREIKEYSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTILKNKSNI 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             NN  E G +++ +D      +GE    L  +E  IL Y + N+   +++ ++ + I+G
Sbjct: 123 NINNEIEIGNLKI-NDISHSVRKGEGDLDLAPKEYEILMYFIKNKNIALSREKMLTEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D    + +V+ HI  LRK    K+G + + + R +GY  +
Sbjct: 182 -YDYTGNDRIVDVHIKNLRK----KIGDEYIKTIRSVGYKFE 218


>gi|242372109|ref|ZP_04817683.1| possible response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242350221|gb|EES41822.1| possible response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 223

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 62/113 (54%), Gaps = 8/113 (7%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--PIRVFSDGRDPEVQGEVFP 148
           F++G  D + KP    E+  RVA     L ++N++       +++  +  + +V+ +   
Sbjct: 91  FENGAVDYIKKPFDPMELYYRVA-----LHLNNDKTSYCYKNLKIDFNSTEVKVKDKTIN 145

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           L  RE  +L +L+ NR + ++K QI+  ++G F  +V++N +  HI  LRKK+
Sbjct: 146 LTSREYDLLLFLVNNRNQVLSKDQIYEKVWG-FHTSVDDNTLMVHIRTLRKKI 197


>gi|228985086|ref|ZP_04145253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774573|gb|EEM22972.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 225

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 68  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 128 IQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ H+++LR+K + +     + + R LGY ++
Sbjct: 187 NERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLE 222


>gi|239816259|ref|YP_002945169.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239802836|gb|ACS19903.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 224

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 24/177 (13%)

Query: 54  IGKGEKVLELPRIIRAHSQVPL-IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +G G+ +  LP++ RA  + P+ I ++    +   +   D+G DD + KP    E+LAR+
Sbjct: 54  LGDGDGLSLLPQV-RALREPPIVIVLTARDQVTDRIRGLDAGADDYLIKPYDPAELLARL 112

Query: 113 AAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
            A+ RR        L +     +    RV  DG +P V      L ++E  +L  +MA R
Sbjct: 113 RAVERRRSAGSSPVLHLGTLEIDLAHDRVRKDG-NPVV------LTQKEWALLR-VMATR 164

Query: 165 GKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +R+  +  +  A+YG  DEA + N +E  IS+LR+    KLG + + + R LGY +
Sbjct: 165 PERIHTRENLADALYGFGDEA-DSNTLEVFISRLRR----KLGKNHIQTLRGLGYRL 216


>gi|169827847|ref|YP_001698005.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
 gi|168992335|gb|ACA39875.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 11/185 (5%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           +E L+ +   D   I   ++  G    E+ + IRA + +P++ +S        +     G
Sbjct: 35  DEGLKQALHGDYDLIILDIMLPGMNGFEICKQIRAVNNIPILFVSAKKEDIDKIRGLGLG 94

Query: 95  VDDVVNKPIHHREILARVAAI---YRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148
            DD + KP    E++ARV A    Y RL   + +NN      + + +  R   V GE   
Sbjct: 95  ADDYITKPFSPSELVARVKAHISRYERLASNQPTNNMMSIHGLTIDTSARKVFVNGEEVA 154

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208
              +E  +L + + +  + ++K Q++   +G ++ A + + V  HI KLR+K+      D
Sbjct: 155 FTTKEFDLLVFFVKHPNQVLSKEQLYERNWG-YESAADVSTVTVHIRKLREKIER----D 209

Query: 209 PVDSK 213
           P   K
Sbjct: 210 PAQPK 214


>gi|167901468|ref|ZP_02488673.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
          Length = 247

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       +  L  RE  +LE L+   G+ V+K Q
Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 219


>gi|188990862|ref|YP_001902872.1| DNA-binding response regulator CreB [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732622|emb|CAP50816.1| two-component system response regulator [Xanthomonas campestris pv.
           campestris]
          Length = 256

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 7/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S+VP+I ++        +   + G DD + KP   RE++ARV A  RR  V
Sbjct: 91  EVCRTLRGFSEVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRSV 150

Query: 122 SNNRAETG--PIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +AE G  P   F+   DG        + PL R E  +L  L+   G  ++++Q+   
Sbjct: 151 AVAQAEPGWQPHGAFAIDRDGSRIRYGETLLPLTRYEYALLAALLQRPGAILSRSQLMDR 210

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            +    ++ +   V++HI  LR KLR   +  DP+ + R LGY+++
Sbjct: 211 GWDASADSADRT-VDTHIKTLRAKLRQAGVPADPIRTHRGLGYALE 255


>gi|152991168|ref|YP_001356890.1| two-component response regulator [Nitratiruptor sp. SB155-2]
 gi|151423029|dbj|BAF70533.1| two-component response regulator [Nitratiruptor sp. SB155-2]
          Length = 218

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           F  G DD + KPI   E+L R+ AI RR+       +      + +    +   EV  L 
Sbjct: 93  FLLGGDDYLTKPIDLEELLLRIGAILRRIN-GEKVIQIDGYHFYPEQFLLKKGSEVIELK 151

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
           ++E ++L   + NR K V K QIF  ++   +E + E  +  +IS L+K      G D +
Sbjct: 152 QKELQLLHLFVKNRKKVVTKEQIFQTLWS-HEEIISEGSLRVYISTLKK----IFGKDSI 206

Query: 211 DSKRFLGY 218
            + R +GY
Sbjct: 207 QNIRSIGY 214


>gi|281356725|ref|ZP_06243216.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281316852|gb|EFB00875.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 230

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 31/225 (13%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + L + GY  +   DG   +G     F+   +S    D++ ++  L G  G  ++E  ++
Sbjct: 18  KGLQQSGYTTVHAADG--RDGL----FKATTESC---DLAVVDIMLPGLDGFTLIE--KL 66

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
             A  ++P+I +S   S+   +    +G DD + KP    E++AR+ A+ RR        
Sbjct: 67  RAAGIKLPVIVLSARSSVDDKIRALQTGGDDYLVKPFSFSELIARIQALLRRASATAEPS 126

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L V +   +    +V+      ++Q    PL   E  +LEYL  N G+ V+KT I   +
Sbjct: 127 TLTVGDLSIDLLSRKVYRGSTRIDIQ----PL---EFTLLEYLARNAGRVVSKTMIMEHV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   FD   + N+VE+ + +LR+KL        + + R  GY ++
Sbjct: 180 WEYNFDP--QTNIVETRMCRLREKLDKPFKEKLLHTVRGFGYVLE 222


>gi|254251504|ref|ZP_04944822.1| two component transcriptional regulator [Burkholderia dolosa
           AUO158]
 gi|124894113|gb|EAY67993.1| two component transcriptional regulator [Burkholderia dolosa
           AUO158]
          Length = 269

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 16/166 (9%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+   +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR    
Sbjct: 89  LKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR---- 144

Query: 123 NNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q+  
Sbjct: 145 --GAGGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVD 202

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + E V  N +E ++ +LRKK+   +G   + + R LGY ++
Sbjct: 203 HLCE-WGEEVSNNAIEVYVHRLRKKI-EPIGVR-ISTVRGLGYCLE 245


>gi|126699391|ref|YP_001088288.1| two-component response regulator [Clostridium difficile 630]
 gi|115250828|emb|CAJ68652.1| Two-component response regulator [Clostridium difficile]
          Length = 244

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 19/163 (11%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + IR +  QV +I ++        ++ F SG DD + KP   +E+L RV+A+ RR+
Sbjct: 75  IEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRV 134

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V ++   + P  +  D R     G+   L   E  I++YL++N  + +++ QI 
Sbjct: 135 AKDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQIL 194

Query: 175 SAIYG---LFD-EAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             ++G   L+D + V+ N+         +++RNK+  DP   K
Sbjct: 195 DEVWGTNYLYDFKIVDVNI---------RRIRNKIEDDPSKPK 228


>gi|73663371|ref|YP_302152.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123641861|sp|Q49VK3|GRAR_STAS1 RecName: Full=Response regulator protein graR; AltName:
           Full=Glycopeptide resistance-associated protein R
 gi|72495886|dbj|BAE19207.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 224

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 7/159 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121
           R IR  S  P++ +S   +    +   + G DD V KP +   ++A++ AIYRR+    +
Sbjct: 64  RKIREVSNTPILFLSSRDNPMDQVMSMELGADDYVQKPFNTNVLIAKLQAIYRRVYQFSL 123

Query: 122 SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R  +    +    +D    +     L + E  ILE L+  + + V +  + +A++  
Sbjct: 124 DEKRVLSWQDAILDLSKDSINKEDHQIYLSKTEMIILEMLVKKQNQIVTRDTLITALWD- 182

Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DEA V +N +  ++++LRKKL +    D +++K   GY
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLADIDMNDAIETKIGKGY 220


>gi|332142876|ref|YP_004428614.1| two component transcriptional regulator, winged helix family
           protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143079|ref|YP_004428817.1| two component transcriptional regulator, winged helix family
           protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552898|gb|AEA99616.1| two component transcriptional regulator, winged helix family
           protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553101|gb|AEA99819.1| two component transcriptional regulator, winged helix family
           protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 229

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 18/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D A +++ YI      G S+  +          +    D++ I+  L  + E   
Sbjct: 5   IALVEDDAAIRENYIMALKAQGYSVNAYEDRPSAAEAFNHTLPDLAIIDIGLKDEIEGGF 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R  SQ +P+I  +   +   T+     G DD + K I    +LAR+AA++RR  
Sbjct: 65  MLCQQLRGLSQTLPIIFFTARDNDVDTISGLRMGADDYLTKDISMAHLLARIAALFRRTD 124

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        +  + G ++V         Q +   L   E  +L  L+   G   ++ Q  
Sbjct: 125 LLAAPSEQKDELKVGDLKVDVSRMTVSWQNQAVLLTVTEFWMLHALIKRPGHVKSRQQ-- 182

Query: 175 SAIYGLFDEA---VEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGY 218
                L DE+   V++  + SHI ++RKK ++    FD +D+   +GY
Sbjct: 183 -----LMDESRMVVDDTTITSHIKRMRKKFVQLDPNFDHIDTVYGMGY 225


>gi|331001884|ref|ZP_08325405.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412207|gb|EGG91601.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 231

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 22/156 (14%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ + IR  S++P+I ++   +    +   + G DD + KP +  E+ AR+ AI RR  
Sbjct: 61  MEVCQAIREFSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNS 120

Query: 119 ------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                       ++VS+ R +    RVF   +D E+      L  +E  ILE L  N  K
Sbjct: 121 KKAKAVEKNERVIEVSDLRLDLDSRRVFE--KDKELN-----LTAKEFDILELLTQNPDK 173

Query: 167 RVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKL 201
             ++ ++ S ++G    EA +   V+ H+ +LR+K+
Sbjct: 174 VYSREKLLSIVWGNKLHEAGDVRTVDVHVRRLREKI 209


>gi|311067831|ref|YP_003972754.1| two-component response regulator YkoH [Bacillus atrophaeus 1942]
 gi|310868348|gb|ADP31823.1| two-component response regulator (YkoH) [Bacillus atrophaeus 1942]
          Length = 225

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 2/159 (1%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKV 121
           L R+ +     P+I ++   S+   +   D G +D V KP    E+LAR+ AA+ +    
Sbjct: 66  LRRLRKTDMHTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGSD 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G ++V    R+ +   +   L  RE  +L +L+ +  + + + QI ++++G F
Sbjct: 126 PGTFLSLGDLQVNEKTREVKRADQEVELTPREFDLLVFLLKHPQQVLTREQILASVWG-F 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   + NVV+ +I  +RKK+        + + R +GY+I
Sbjct: 185 DYLGDTNVVDVYIRYIRKKMDYPYEKQLIHTVRGVGYAI 223


>gi|256004559|ref|ZP_05429537.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417251|ref|ZP_06248271.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255991431|gb|EEU01535.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281408653|gb|EFB38911.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316940723|gb|ADU74757.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 223

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R ++ +P+I +S        +   + G DD + KP   RE+L+R+    RR   +    E
Sbjct: 68  RENNDIPVIFLSASDDEYNIVTGLEIGADDYIVKPFRPRELLSRIRKALRRNGKAGAVIE 127

Query: 128 TGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
              IRV +  G   +   E+F L   E R+L   + N+G  ++++++   I+ +  E V 
Sbjct: 128 HDNIRVDTVRGIVTKNGSEIF-LSALEYRLLLVFLNNKGAVLSRSRLLEEIWNIAGEYVN 186

Query: 187 ENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
           +N +  +I +LR+K+ +    DP     + + R LGY +
Sbjct: 187 DNTLTVYIKRLREKIED----DPQNPTFIKTVRGLGYKV 221


>gi|255523933|ref|ZP_05390896.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185172|ref|ZP_06853582.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512364|gb|EET88641.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050006|gb|EFG89430.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 233

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 7/116 (6%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI-----RVFSDGRDPEVQGEVF 147
           G DD + KP   RE++AR+ ++ RRL K  +   ++G I      +    R   ++  + 
Sbjct: 94  GADDYMTKPFDIRELIARIKSLIRRLDKTIDEEKDSGVINIGDLNINKKKRTVSIKNSLL 153

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
                E  +L  L++N G   ++ QI + I+ + D A     V++HI ++RKKL N
Sbjct: 154 EFTPMEFDLLYLLLSNSGTVYSREQILNIIWNM-DYAGGTRTVDTHIQRIRKKLGN 208


>gi|229119146|ref|ZP_04248471.1| hypothetical protein bcere0017_53940 [Bacillus cereus Rock1-3]
 gi|228664299|gb|EEL19815.1| hypothetical protein bcere0017_53940 [Bacillus cereus Rock1-3]
          Length = 230

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 5/160 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 73  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+   GK ++   I S ++G +
Sbjct: 133 VAKELHYGKLTLLPEDFKVFYGDEELLLTLKEFEILMLLVQKNGKTLSHEVILSRVWG-Y 191

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL + +    + + R +GY ++
Sbjct: 192 DFDGDGSTVHTHIKNLRAKLPDNI----IKTVRGVGYRLE 227


>gi|150388543|ref|YP_001318592.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948405|gb|ABR46933.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 240

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 107/233 (45%), Gaps = 18/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           ++ I +   VK   + +  D+ + ++G   S E E +  S A +   A+  F  G  + +
Sbjct: 5   YLCIGNLEGVKTMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFI 64

Query: 61  ---LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
              L LP+I        IR  S V +I ++        +   + G DD + KP + RE++
Sbjct: 65  ILDLMLPKIDGITLCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELI 124

Query: 110 ARVAAIYRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           AR+  + RR    +V  +  +   + V    R      EV  L  +E  IL  L+ N+G+
Sbjct: 125 ARMRTLIRRQEKGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGR 184

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
              + +IF  ++G  +   +   ++ H+  LR+KL++     P +++K  +GY
Sbjct: 185 VFGREEIFQLVWG--EPCYDTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGY 235


>gi|126664628|ref|ZP_01735612.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
 gi|126630954|gb|EBA01568.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
          Length = 230

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 75/150 (50%), Gaps = 6/150 (4%)

Query: 57  GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +EL R ++     + +P+I ++        +   +SG DD + KP   RE+LAR+ 
Sbjct: 59  GTSGIELARRLKKDDTTAAIPIIMLTAKVEEDNKILGLESGADDYITKPFSPRELLARLK 118

Query: 114 AIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR   +  ++  E G + +         Q     L   E R+L++ M+++ +  +++
Sbjct: 119 AVLRRSTPAGVDSALEVGGLTLDPLSHRVSSQFGQLELGPTEYRMLQFFMSHQDRVYSRS 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           Q+   ++G  +  ++E  V+ HI +LRK L
Sbjct: 179 QLLDQVWG-ANVYLDERTVDVHIRRLRKAL 207


>gi|118477427|ref|YP_894578.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|229090987|ref|ZP_04222211.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|229184209|ref|ZP_04311418.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|118416652|gb|ABK85071.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|228599324|gb|EEK56935.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228692388|gb|EEL46123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP    E+ AR+ ++ RR++V + +A T   GP  +          G++  L 
Sbjct: 98  GADDYIAKPFSPVELTARIQSLLRRIEVHDEKAHTITSGPFLLNIIEERLYKSGQLVDLT 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E  IL+YLM    K V++ +I + I+G  +   E  VV+ ++ +LR+K+
Sbjct: 158 PTEYMILQYLMNQASKPVSRDEILNMIWGT-NYVGETKVVDVNMRRLRQKI 207


>gi|86605728|ref|YP_474491.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554270|gb|ABC99228.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 249

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R++R   + +P++ ++   S    +   + G DD + KP   RE++AR  ++ RR 
Sbjct: 84  LDLCRLLRREGNTIPILMLTAKSSETDRVVGLELGADDYLTKPFGMRELIARCRSVLRRR 143

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + S+    T    G I +F+      V+G       +E R+LE  M+N  +   + Q+  
Sbjct: 144 QQSHASEATVLRYGDICMFTQECRVLVRGVEVSFSPKEFRLLELFMSNPRRVWTREQLLE 203

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
            I+G  D   +   V+ HI    + LR KL  DP
Sbjct: 204 RIWG-SDFMGDSKTVDVHI----RWLREKLELDP 232


>gi|187731475|ref|YP_001883062.1| DNA-binding response regulator CreB [Shigella boydii CDC 3083-94]
 gi|187428467|gb|ACD07741.1| transcriptional regulatory protein CreB [Shigella boydii CDC
           3083-94]
          Length = 221

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 7/161 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +++  H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  ++
Sbjct: 60  QLLALHPALPVLFLTARSEEVERLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFSS 119

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  +++  
Sbjct: 120 PSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWED 178

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +  +   V++HI  L  KLR       P+++ R +GYS+
Sbjct: 179 AQDTYDRT-VDTHIKTLHAKLRAINPDLSPINTHRGMGYSL 218


>gi|30262004|ref|NP_844381.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527270|ref|YP_018619.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184844|ref|YP_028096.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319288|ref|ZP_00392247.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165870159|ref|ZP_02214815.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167638255|ref|ZP_02396532.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686370|ref|ZP_02877591.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705941|ref|ZP_02896403.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650880|ref|ZP_02933777.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566407|ref|ZP_03019325.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036950|ref|ZP_03104329.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218903126|ref|YP_002450960.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227815205|ref|YP_002815214.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254684569|ref|ZP_05148429.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721327|ref|ZP_05183117.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734873|ref|ZP_05192585.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741273|ref|ZP_05198961.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254750824|ref|ZP_05202863.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760064|ref|ZP_05212088.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256630|gb|AAP25867.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502418|gb|AAT31094.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178771|gb|AAT54147.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714047|gb|EDR19568.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513556|gb|EDR88925.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170128943|gb|EDS97808.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669446|gb|EDT20188.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083341|gb|EDT68402.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562542|gb|EDV16509.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990439|gb|EDX54428.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218537031|gb|ACK89429.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227005965|gb|ACP15708.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 229

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP    E+ AR+ ++ RR++V + +A T   GP  +          G++  L 
Sbjct: 95  GADDYIAKPFSPVELTARIQSLLRRIEVHDEKANTITSGPFLLNIIEERLYKSGQLVDLT 154

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
             E  IL+YLM    K V++ +I + I+G  +   E  VV+ ++ +LR+K+
Sbjct: 155 PTEYMILQYLMNQASKPVSRDEILNMIWGT-NYVGETKVVDVNMRRLRQKI 204


>gi|312868262|ref|ZP_07728462.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
 gi|311096007|gb|EFQ54251.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
          Length = 233

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 11/173 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ R IR  S VP+I +S   +    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSE 120

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   K ++     G + +  D        +   L  RE  +L +L  + G+ + + 
Sbjct: 121 FAADPQFEKDADTEIVIGDLHILPDAFLVRKGNKELDLTHREFELLYHLATHVGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  + +LR+K+ +  G  + + ++R +GY +  N
Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|260683442|ref|YP_003214727.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687038|ref|YP_003218171.1| two-component response regulator [Clostridium difficile R20291]
 gi|260209605|emb|CBA63261.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213054|emb|CBE04415.1| two-component response regulator [Clostridium difficile R20291]
          Length = 244

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 19/163 (11%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + IR +  QV +I ++        ++ F SG DD + KP   +E+L RV+A+ RR+
Sbjct: 75  IEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRV 134

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V ++   + P  +  D R     G+   L   E  I++YL++N  + +++ QI 
Sbjct: 135 AKDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQIL 194

Query: 175 SAIYG---LFD-EAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             ++G   L+D + V+ N+         +++RNK+  DP   K
Sbjct: 195 DEVWGTNYLYDFKIVDVNI---------RRIRNKIEDDPSKPK 228


>gi|260578371|ref|ZP_05846285.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603393|gb|EEW16656.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 235

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 92/203 (45%), Gaps = 6/203 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D         G  +E  ++ +    L ++ + D   ++  + G     L 
Sbjct: 12  LVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGFTL- 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++  A    P + ++    ++  +     G DD V KP    E++ R+  I RR+   
Sbjct: 71  LNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSSE 130

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + +  +      I +  D  +    GE+  L   E ++L YL+ N    ++K +I   ++
Sbjct: 131 DEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDHVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
             +D   + NVVES++S LR+K+
Sbjct: 191 N-YDFGGDGNVVESYVSYLRRKI 212


>gi|229155571|ref|ZP_04283679.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627889|gb|EEK84608.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 225

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 68  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 128 IQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ H+++LR+K + +     + + R LGY ++
Sbjct: 187 NERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLE 222


>gi|210632289|ref|ZP_03297256.1| hypothetical protein COLSTE_01150 [Collinsella stercoris DSM 13279]
 gi|210159605|gb|EEA90576.1| hypothetical protein COLSTE_01150 [Collinsella stercoris DSM 13279]
          Length = 224

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 15/228 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGE 58
           +FV+ DD A +++  I +    G   E    L F+  ++   +AR D+  ++  L G   
Sbjct: 4   IFVVEDD-APIRNEVIEVLERQG--YEASYCLTFDHVVEDILAARPDLVLLDLTLPGTDG 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +++   R +R  S +P+I ++   +    +     G DD V+KP   R ++ARV A+ RR
Sbjct: 61  QLI--CRELRQQSDIPVIVLTSRVTEVDEVMSMTMGADDFVSKPYSARVLVARVQALLRR 118

Query: 119 LKVSNN--RA--ETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + S +  RA    G     S      V+ G    L + E RIL  L+   G  V++  I
Sbjct: 119 TQGSQDAGRALEHNGVALDLSRSTATAVETGRSIELTKNEMRILSLLIGKAGTIVSREAI 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              ++   D  V++N +  +I++LR  L  K+G    + + R  GYS+
Sbjct: 179 MRDLWD-SDAFVDDNTLTVNINRLRATL-EKIGVTGYLTTHRGRGYSV 224


>gi|218441529|ref|YP_002379858.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174257|gb|ACK72990.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 13/163 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+  A    P++ ++   +    +   D+G DD V KP    E+ AR+ A+ RR     N
Sbjct: 65  RLRSAGQMTPVLMLTARDTSSDKVKGLDAGADDYVVKPFDLPELTARIRALLRR----GN 120

Query: 125 RA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            A     E   +R+  + ++    G+   L  +E  +LE  + N    + + QI   ++ 
Sbjct: 121 TALPPVLEWENLRLDPNTKEVTYAGKPLHLTPKEYGLLELFLRNSHMVLNRGQILEHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            F++   E  V+ HI +LRKKLR+ +G  P  +++   LGY +
Sbjct: 181 -FEDPPSEEAVKVHIKELRKKLRS-VGASPDSIETVYGLGYRL 221


>gi|167751876|ref|ZP_02424003.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216]
 gi|167660117|gb|EDS04247.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216]
          Length = 217

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 13/136 (9%)

Query: 85  QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV-- 142
           +  L  F +G DD ++KPI  + +++R+ AI +R+      A   P  +  D     V  
Sbjct: 89  EQQLAGFGAGADDYISKPIKPKLLISRIQAILKRV------AADKPASLVIDRERHLVIR 142

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
            GE   LPR+E  +L  L ++ GK  ++ +I+S I+G     V +  ++ H+    +K+R
Sbjct: 143 NGERIELPRKEFALLALLASSPGKLFSREEIYSRIWG-DSVVVGDRTIDVHV----RKIR 197

Query: 203 NKLGFDPVDSKRFLGY 218
            K+G   + + + +GY
Sbjct: 198 QKIGDGHISTVKGMGY 213


>gi|167579955|ref|ZP_02372829.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 257

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 70  LDVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 128

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q
Sbjct: 129 -----GAGGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 184 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 229


>gi|119486828|ref|ZP_01620803.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119456121|gb|EAW37254.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 824

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 12/144 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
           RI      VP++ ++   S    +   ++G+DD + KP   RE+ AR+ A+ R  + +N 
Sbjct: 65  RIREQGYSVPILLLTVQNSSIDHVACLEAGIDDHLIKPFSPRELFARIRALLRSPRQANA 124

Query: 124 -----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N     PI      R+   Q     L  +E  +LE  + N  + + +T I   ++
Sbjct: 125 PLLKWNSLHLDPI-----SREVTYQQHPLSLSPKEYSLLELFLRNPKRVLTQTAILEHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR 202
             F+    E+ V +HI +LR+KL+
Sbjct: 180 S-FESQPNEHTVRAHIKRLRRKLK 202



 Score = 42.4 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 43/82 (52%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++ +  R  R+ + +P++ +S     QT  D + +G DD ++KP    E++ R+    
Sbjct: 586 GVELCQTVRTDRSWNALPILFLSARKEPQTIQDIYQAGADDYISKPFAEAELITRIFNRL 645

Query: 117 RRLKVSNNRAETGPIRVFSDGR 138
            R+ +  + AET PI   ++ R
Sbjct: 646 DRIHLLRSLAETDPITGLANRR 667


>gi|329927919|ref|ZP_08281947.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
           sp. HGF5]
 gi|328938138|gb|EGG34534.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
           sp. HGF5]
          Length = 228

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 9/182 (4%)

Query: 27  EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
           EGF  L     ++ L+ + RE  + +    +  G+  +E+ + +R  S   +I ++    
Sbjct: 25  EGFRVLAVTNGQDALECARREQPALVVLDWMLPGKSGIEVCKELRQSSACGIIMVTAKSE 84

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDP 140
               +   + G DD + KP   RE+ +R+ ++ RR   ++V     + G + +       
Sbjct: 85  ETDKIIGLELGADDYITKPFSLRELTSRIRSVLRRTAPIQVEAPPLQRGDLLISETQCQV 144

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHISKLRK 199
              GE+ PL   E +IL  L    G   ++ Q+  A   + D+ +  E  ++SH+SKLRK
Sbjct: 145 TRNGELIPLTPTEFKILLTLANRPGVVFSRLQLMKA--AMDDDFMNYERTLDSHVSKLRK 202

Query: 200 KL 201
           KL
Sbjct: 203 KL 204


>gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 36/227 (15%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           R L + GY      +GV  +G + +E E +       D+  ++  L G  G +++++ R 
Sbjct: 18  RGLEESGYRVEVARNGV--DGKHLIEEETF-------DLVILDVMLPGLDGWQLVQVVRQ 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
             AH+  P++ ++   +++  +   + G DD + KP  + E+LARV  + RR        
Sbjct: 69  RSAHT--PVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLLRR-------- 118

Query: 127 ETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             GP R                R    QGE   L  +E  +L  L++ +G+ +++ QI S
Sbjct: 119 --GPPREVEHFHVADLELDLLRRRVTRQGERINLTNKEFALLHLLLSRQGEVLSRAQIAS 176

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + FD   + NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 177 QVWQMNFDS--DTNVVDVAIRRLRAKVDDPYPLKLIHTVRGMGYVLD 221


>gi|312197966|ref|YP_004018027.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229302|gb|ADP82157.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 233

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 13/166 (7%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           R D+  ++  L   G   LE+ R +R    VP++ ++   +    +   + G DD V KP
Sbjct: 45  RPDLVVLDLML--PGLNGLEVCRRLRETGSVPVVMLTALGAEHDRIVGLEHGADDYVTKP 102

Query: 103 IHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGE--VFPLPRRERR 155
              RE+  RV ++ RR        +    + GP  V    R  EV+GE     L  RE  
Sbjct: 103 FSPRELTLRVQSVLRRAAGPPTSTAGGVIDVGPFTVDLPAR--EVRGENGTISLTVREFD 160

Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +L YL+ +  +  ++ ++  A++G      +++ V  HI +LR+KL
Sbjct: 161 LLAYLVRHPRRAFSRPELMEAVWGW--SYGDQSTVTVHIRRLREKL 204


>gi|66731643|gb|AAY52009.1| VanR [Paenibacillus apiarius]
          Length = 231

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 18/178 (10%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L + + IR     P+I ++   +    +     G DD + KP    E++ARV A  
Sbjct: 58  GASGLAICQKIRDKHTYPIITLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 117

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQG-EVF------PLPRRERRILEYLMANRGKRVA 169
           RR K  N   E     +   G    +   E F       L   E  IL  L  N+G  V+
Sbjct: 118 RRYKKYNGVTEQNENVIVHSGLVININTHECFLNEKQLSLTPTEFSILRILCENKGNVVS 177

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221
             Q+F  I+G    +   N +  HI  LR+K+      D +D+ +++      GY I+
Sbjct: 178 SEQLFHEIWGDEYFSKSNNTITVHIRHLREKMN-----DTIDNPKYIKTVWGVGYKIE 230


>gi|85703117|ref|ZP_01034221.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. 217]
 gi|85672045|gb|EAQ26902.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. 217]
          Length = 229

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R ++  S+   +P+I +S        +   ++G DD V KP    E++ARV A  R
Sbjct: 65  IEVCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLR 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFS 175
           R + +        + +  D     V     PL     E R+L   M   G+  ++ Q+  
Sbjct: 125 RTRPATVGERLEYLDIVLDAETHRVTRSEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 185 RVWG-RDIYVDTRTVDVHIGRLRKALCQYGGEDPLRTVRGAGYAL 228


>gi|309778700|ref|ZP_07673474.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA]
 gi|308922550|gb|EFP68173.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA]
          Length = 225

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 14/190 (7%)

Query: 38  LQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
           L S  R D+  ++  L G  G  V+   ++IR  S VP++ ++    +   +  F+ G D
Sbjct: 39  LASEVRYDLILLDVMLPGADGWSVI---KMIRQKSDVPVLFLTARDDVADRVRGFELGAD 95

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRR 152
           D + KP    E+LAR   I R L+ S+ R       G + +   GR     G    L  +
Sbjct: 96  DYLVKPFAFAELLAR---IRRCLRQSSGRESEHLSVGDLDIDVLGRKVVRAGVKVELTSQ 152

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           E  +L  L    G+ +++T I S ++ + FD   + NVV+  I +LR KL        + 
Sbjct: 153 EFVLLHLLARRSGEVLSRTSIASHVWDVNFD--TDTNVVDVAIRRLRAKLDEPFDTKLIH 210

Query: 212 SKRFLGYSID 221
           + R +GY +D
Sbjct: 211 TVRGMGYVLD 220


>gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVF 147
           D  D G DD + KP  +  ++ARV A+ RR  +      E G +R+           E  
Sbjct: 89  DGLDVGADDYLTKPFSYVVLIARVRALVRRGGLDRPEVLELGDLRLEPTALACSRGNEGI 148

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKL 205
            L  +E  +LE L    G+ V+KT+I   ++ ++D A E   N+VE +I  LR+K+    
Sbjct: 149 TLTAKEFAVLECLARRAGQVVSKTEI---VHTVWDTAYEGGANLVEVYIRTLRRKIDVPY 205

Query: 206 GFDPVDSKRFLGY 218
           G   + + R  GY
Sbjct: 206 GRQAIRTIRGAGY 218


>gi|283786785|ref|YP_003366650.1| transcriptional regulator [Citrobacter rodentium ICC168]
 gi|282950239|emb|CBG89875.1| transcriptional regulator [Citrobacter rodentium ICC168]
          Length = 224

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 17/217 (7%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65
           ++ALV++G    F  D V    F+ L  +  L S +     A+    I   G   LE+ +
Sbjct: 17  EKALVQNG----FAVDCV----FDGLAADHLLHSES----YALAVLDINMPGIDGLEVVQ 64

Query: 66  IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
            +R   Q +P++ ++   ++   +   ++G DD + KP    E+ AR+ A+ RR      
Sbjct: 65  RLRKRGQTLPVLLLTARSAVADRVKGLNAGADDYLPKPFELEELDARLRALLRRSAGQVQ 124

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             +      F D     +Q +   L  RE  +L  LM  R + V++ Q+F  ++ L DE 
Sbjct: 125 ELQQLGDLAFHDEGYFLLQQQPLALTPRELALLTVLMYRRTRPVSRQQLFEQVFSLNDEV 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E+ +E +I +LRKKL        + + R LGY ++
Sbjct: 185 SPES-IELYIHRLRKKLHG--SNVRITTLRGLGYLLE 218


>gi|302528403|ref|ZP_07280745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437298|gb|EFL09114.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 226

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 5/161 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IRA  QVP+I ++        +   ++G DD V KPI  R + AR+ A+ RR   
Sbjct: 62  ETCRRIRALGQVPIIMLTARSDDFDVVAGLEAGADDYVVKPIEPRVLDARIRAVLRRTAA 121

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               A   + G + +   G      GE  PL   E ++L  +    G+  +++Q+ ++++
Sbjct: 122 EPGAAGPEQHGDLVIDRAGMLVHKHGEQVPLTPTELKLLLEISRTPGQVHSRSQLLASVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           G  D   +  +V++ + +LR K+ +     D V + R  GY
Sbjct: 182 G-HDYLGDSRLVDACVQRLRAKIEDVPARPDHVQTVRGFGY 221


>gi|229188858|ref|ZP_04315891.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594563|gb|EEK52349.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 225

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVMKPFHEEELFARIEAVLRRTNE 121

Query: 122 SNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  G   V+ + +    V  E   L   E  +L   + +    + + Q+   I+GL
Sbjct: 122 HKQIQYHGI--VWDETKHFVSVHSEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222
            +   E+  V+SHI  LR KLR K  F P+D   K   G    W
Sbjct: 180 -NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220


>gi|218294733|ref|ZP_03495587.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244641|gb|EED11165.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 224

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 2/111 (1%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
            G DD + KP   +E+LAR+ A+ RR      R   GP+ +  + R   ++GE   L   
Sbjct: 95  EGADDYLGKPFSLKELLARIKALLRRAG-KEGRRRFGPLELDLEARQAFLEGEPLKLSPT 153

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           E  +L  L+   G+   + ++   ++G  D    E VV+++I  LRKKL++
Sbjct: 154 EMNLLLTLVQAPGRVYTREELLERVWG-PDFPGSERVVDAYIRLLRKKLKD 203


>gi|187932993|ref|YP_001886720.1| ResD family transcriptional regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721146|gb|ACD22367.1| transcriptional regulatory protein ResD [Clostridium botulinum B
           str. Eklund 17B]
          Length = 223

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 94/200 (47%), Gaps = 14/200 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+KDG+      DG           EE L   ++E +  I   ++      LE+   +R 
Sbjct: 22  LLKDGFNIFEASDG-----------EEGLFQFSKEKIDLIILDIMMPKMNGLEMLEKLRE 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAE 127
            S VP+I ++     +  L+ +  G DD + KP   + ++A+V A+ +R +  + ++   
Sbjct: 71  VSNVPVIFLTAKGEEEDKLEGYQFGADDYMTKPFSPKVLVAKVKALLKRTREDLDSSIQN 130

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              + V     + +V  ++  L  +E  +L YL+ N    +++  I   ++G+ D   + 
Sbjct: 131 FNGLSVNQLSHEVKVNDKIILLSPKEYELLIYLINNESIALSRDNILDNVWGI-DYYGDI 189

Query: 188 NVVESHISKLRKKLRNKLGF 207
             V+++I +LR+KL +K  +
Sbjct: 190 RTVDTNIKRLREKLLDKSSY 209


>gi|153939321|ref|YP_001389971.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935217|gb|ABS40715.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318056|gb|ADF98433.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 227

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 17/169 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R I     +P+I ++    +   +   + G DD + KP + +E+L RV    RR+ 
Sbjct: 62  FELCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVN 121

Query: 121 VSNNRAE------TGPIRVFSDGR-----DPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
               +++         ++V  +GR     D EV+     L  +E  +LE+ + NR    +
Sbjct: 122 KYKEKSDEEFIYINKFVKVNLEGRIVFKDDKEVK-----LKPQEYELLEFFVKNRNIVFS 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  + + ++G FD   E   V+ H+ +LR KL  +     +D+   +GY
Sbjct: 177 REILLNKVWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTAFGIGY 224


>gi|17228689|ref|NP_485237.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130541|dbj|BAB73151.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 228

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 24/218 (11%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L  +GY      DG++  G         L   +  D++ ++  L   G   LE+ R +RA
Sbjct: 22  LSSEGYKVSVAHDGIT--GLT-------LARESTPDLAVLDWML--PGLSGLEICRRLRA 70

Query: 70  H-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128
             + +P+I ++    +   +   D+G DD V KP    E+LAR+ A  RR + ++     
Sbjct: 71  TGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQETDE---- 126

Query: 129 GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             +  F D        EVF       L  +E  +LEYL++   +   + QI   ++G +D
Sbjct: 127 -DLLQFEDLSLNRRTREVFRGNRAVELTAKEFDLLEYLLSYPRQVFTRDQILEKVWG-YD 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N++E +I  LR KL        V + R +GY++
Sbjct: 185 FMGDSNIIEVYIRYLRLKLEENNEKRLVHTVRGVGYAL 222


>gi|86138909|ref|ZP_01057481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. MED193]
 gi|85824556|gb|EAQ44759.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. MED193]
          Length = 229

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 3/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGP 130
           +P+I +S        +   ++G DD V KP    E++ARV    RR++ S    R E   
Sbjct: 80  IPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVRPSTVGMRLEFDD 139

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I + ++            L   E R+L   M   G+  ++ Q+   ++G  D  V+   V
Sbjct: 140 IILDAETHKVSRSDNSLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG-RDIYVDTRTV 198

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + HI +LRK L    G DPV + R  GY++
Sbjct: 199 DVHIGRLRKALTQFGGADPVRTVRGAGYAL 228


>gi|326793685|ref|YP_004311505.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326544449|gb|ADZ89669.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 263

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 7/134 (5%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV------QG 144
            ++G DD + KP    E+LAR+ A+ RR   ++   +     V+ D     +        
Sbjct: 127 LEAGADDYLAKPFAISELLARINALGRRTLSTSMEQQQDTTLVYEDLELDLLALKCHRAD 186

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204
           E   L  +E R+LE LM N+G+ + ++ +   ++ + D   E ++VE+HIS+LR K+   
Sbjct: 187 ENILLNTKEIRLLETLMRNQGRVMTRSMLLERVWNI-DFNPETSIVETHISRLRAKVDKP 245

Query: 205 LGFDPVDSKRFLGY 218
                + + R  GY
Sbjct: 246 FPTSLIRTVRGAGY 259


>gi|323485894|ref|ZP_08091229.1| hypothetical protein HMPREF9474_02980 [Clostridium symbiosum
           WAL-14163]
 gi|323400882|gb|EGA93245.1| hypothetical protein HMPREF9474_02980 [Clostridium symbiosum
           WAL-14163]
          Length = 222

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 13/171 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS---GVDDVVNKPIHHREILARVA 113
           G     L   +R  S++P+I ++   S  T +D  +S   G D  + KP +   +LA++A
Sbjct: 58  GTSGFSLCTEVRTFSELPIIFVT---SCNTDMDELNSIMLGGDAFITKPYNTAILLAKIA 114

Query: 114 AIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++ ++   +  R +   G + +  +    +  G    L + E +IL YL  N GK  ++ 
Sbjct: 115 SLLKKAYPAQQREQIVYGDVVLHLESSSLDYHGHSVELTKNELKILYYLFKNGGKICSRG 174

Query: 172 QIFSAIYGLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I   I  L+D    V++N +  +I+++R+KL      D + +K   GY+I
Sbjct: 175 DI---IEYLWDNQLYVDDNALSVNINRIREKLAGIGLTDFIKTKHRQGYTI 222


>gi|293570841|ref|ZP_06681888.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|291609109|gb|EFF38384.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
          Length = 234

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 21/220 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY      DG           EE L+  A  +   I   L+      LE+ R +R 
Sbjct: 21  LAKEGYDVYTAYDG-----------EEALEKVAEVEPDLILLDLMLPKMDGLEVAREVRK 69

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127
              +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +    E  
Sbjct: 70  TYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATATREPEDA 129

Query: 128 ------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +      +GE   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 130 APAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLLQTVWG-Y 188

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           D   +   V+  + +LR+K+  N    + + ++R +GY +
Sbjct: 189 DYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 228


>gi|266622104|ref|ZP_06115039.1| DNA-binding response regulator PhoB [Clostridium hathewayi DSM
           13479]
 gi|288866189|gb|EFC98487.1| DNA-binding response regulator PhoB [Clostridium hathewayi DSM
           13479]
          Length = 223

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 4/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I ++    ++  +  F  G DD V KP     + +R+ A+ RR    +++  +    
Sbjct: 74  MPIIFLTARGDVKDIVAGFGCGADDYVVKPFELEVLYSRIQALLRRAGTVSDQVLSCDFI 133

Query: 133 VFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
             +  +     G E   L + E ++LE L+ N+G+ +++ QI   ++      V +N + 
Sbjct: 134 SLNHSKKTVFCGDEEITLSQMEYQLLEVLLKNKGQTISREQILHEVWDSNGSYVNDNTLT 193

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + +LR+KL   L    +   R  GY ++
Sbjct: 194 VTMKRLREKLHQPLCIKTI---RSFGYRME 220


>gi|229012119|ref|ZP_04169298.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229167311|ref|ZP_04295049.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228615873|gb|EEK72960.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228749207|gb|EEL99053.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 224

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 103/214 (48%), Gaps = 28/214 (13%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAH 70
           K+G+  L   DG           EE LQ    E +  AI  +++ K   +  + + I+ +
Sbjct: 31  KEGFEVLLAKDG-----------EEALQIFYDEKIDLAILDWMMPKSSGIT-VCQEIKKN 78

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127
           S V ++ ++     +  L    SG D+ V KP H   ++ R   + +    ++V + + +
Sbjct: 79  SSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRAKKLVQHEDVIQVQDLKID 138

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
               +V+ + ++ ++        + E ++++  + ++G  + + ++   ++G FD   EE
Sbjct: 139 FTKNKVYKNEKELDI-------TKTELQLIKCFLNHKGTILTRKKLLDIVWG-FDYFGEE 190

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V++H+ +LRK    K+G + + + R LGYS++
Sbjct: 191 RTVDTHVRRLRK----KIGGNIIKTHRGLGYSLE 220


>gi|153815453|ref|ZP_01968121.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
 gi|145847095|gb|EDK24013.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
          Length = 233

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 10/151 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRAKSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124

Query: 122 SNNRAETG--PIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N       P  V  +G    +        G    +P +E  +L  L ++  +   + Q
Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   I+G ++   +   V+ HI +LR+KL++
Sbjct: 185 LLDRIWG-YEYLGDTRTVDVHIKRLREKLKD 214


>gi|159899580|ref|YP_001545827.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892619|gb|ABX05699.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 227

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 13/145 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA S VP+I ++       +L   + G DD + KP   R+++AR+ A+ RR+   N 
Sbjct: 66  RTLRAESSVPIIMLTARVEEVDSLAGLELGADDYITKPFSPRQVVARIKAVLRRV---NG 122

Query: 125 RAETGPIRVFSDGRDPEV--------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             E  P+ V   G + ++        Q  +  L   E  +L  L+ + G+ + ++Q+  A
Sbjct: 123 ELEP-PMIVRKSGIEIDLQRRTVVIEQNPITSLTPTEFDLLVTLVRSAGRPLTRSQLLDA 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           + G   EA +   V++HI  +R+K+
Sbjct: 182 VQGEEGEAYDRT-VDAHIKNVRRKI 205


>gi|325287848|ref|YP_004263638.1| winged helix family two component transcriptional regulator
           [Cellulophaga lytica DSM 7489]
 gi|324323302|gb|ADY30767.1| two component transcriptional regulator, winged helix family
           [Cellulophaga lytica DSM 7489]
          Length = 230

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 7/152 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + +R     P+I ++        +   + G DD + KP   RE+LAR+ A+ RR  
Sbjct: 61  IEVCKKLRIKKNTPVIMLTAKSEEIDRVLGLEIGADDYLTKPFSIRELLARIKAVLRRSD 120

Query: 120 --KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             KV  N + T     + +  D R      +   L  +E  +L  + +N G+  ++T++ 
Sbjct: 121 APKVEENNSTTLNFEGLFIDIDKRKVLHNKQKIDLSPKEFELLVLMASNPGRNYSRTELL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           + I+G   E   E+ V SHI++LR K+ + + 
Sbjct: 181 NIIWGYNFEGY-EHTVNSHINRLRAKIESNMA 211


>gi|312792374|ref|YP_004025297.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179514|gb|ADQ39684.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 221

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 9/136 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           +P I ++        L  F+ G +D + KP    E++ARV  + RR   + N  E+    
Sbjct: 70  IPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRR---NRNFEESIKLL 126

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +F       V GE   L  +E  +L +L  N+    ++ +I   ++G FD   E 
Sbjct: 127 GGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG-FDFIGET 185

Query: 188 NVVESHISKLRKKLRN 203
             V+ HI +LR+KL++
Sbjct: 186 RTVDVHIKQLREKLKD 201


>gi|300715860|ref|YP_003740663.1| transcriptional regulator [Erwinia billingiae Eb661]
 gi|299061696|emb|CAX58812.1| transcriptional regulator [Erwinia billingiae Eb661]
          Length = 227

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 18/161 (11%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S VP+I +S     Q  +   D+G DD + KP    E+LARV    R    S N
Sbjct: 65  REVRQWSAVPVIVLSARSDEQDKIAALDAGADDFLTKPFGIGELLARVRVALRHRDKSGN 124

Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   I  FSD      GR     G    L   E R+L  L+ + GK + + Q+ + ++
Sbjct: 125 GTQASEI-TFSDVCVDIAGRRVTKGGADLHLTPIEFRLLVSLLNHAGKVMTQRQLLNQVW 183

Query: 179 GLFDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216
           G        N VE H   LR     LR KL  DP   +  +
Sbjct: 184 G-------PNAVE-HSHYLRIYMGHLRQKLESDPAQPRHLI 216


>gi|294500085|ref|YP_003563785.1| two-component response regulator BceR [Bacillus megaterium QM
           B1551]
 gi|294350022|gb|ADE70351.1| two-component response regulator BceR [Bacillus megaterium QM
           B1551]
          Length = 230

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 78/146 (53%), Gaps = 15/146 (10%)

Query: 65  RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           R+IR+HS++P+I +S  D+PS +  ++ F   G DD V KP H   ++A++ A+ RR  V
Sbjct: 65  RMIRSHSKIPIIFLSSRDHPSDMVMSMQF---GADDFVQKPFHFDVLVAKIQALLRR--V 119

Query: 122 SNNRAETGPIRVFS----DGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N   E   +  +     D    +V  E     L + E  IL+ L+  +   V++ ++ +
Sbjct: 120 YNYSVEQVNLLSWQGATIDYEKNKVSTESTAIDLTKNEIFILKCLIHKKNTIVSRDELIN 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
           +++      + +N +  ++++LRKKL
Sbjct: 180 SLWE-DKRFISDNTLTVNVNRLRKKL 204


>gi|260663755|ref|ZP_05864642.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|260551704|gb|EEX24821.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 245

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +++ R +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 77  MDVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 136

Query: 120 -KVSNNRAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
            +V+N++ +    GP+ +  D  + + ++G+   L   E  IL YL+A+   RV +   I
Sbjct: 137 NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGIL-YLLASHPNRVFSADDI 195

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K+    G + V ++   +GY ++
Sbjct: 196 FERVWQQ-ESVVSAKTVMVHVSHLRDKIEVATGGEKVIETVWGVGYKVE 243


>gi|271499217|ref|YP_003332242.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342772|gb|ACZ75537.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 240

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   LE+ R IR  +  +P+I IS   S    +   + G DD + KP    E++AR
Sbjct: 56  LMLPGVDGLEICRRIRQMTHYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELVAR 115

Query: 112 VAAIYRRLKV--SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164
           V A++RR +    N R E G + +     DP      + G+   L  RE  +L +   + 
Sbjct: 116 VKALFRRQEAMGQNIRMEAGSVSLHGLDIDPLAREVSLHGKPIELTPREFDLLYWFARHP 175

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           G+  ++  +   ++G   E   E+ V +HI++LR K+
Sbjct: 176 GEVFSRLTLLDRVWGYQHEGY-EHTVNTHINRLRIKI 211


>gi|229113505|ref|ZP_04242954.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229164674|ref|ZP_04292538.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228618754|gb|EEK75716.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228669923|gb|EEL25317.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 221

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++     Q  +     G DD V KP H  E+LAR+ A+ RR K  +   
Sbjct: 61  IREFSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVLRRTKRHHKIE 120

Query: 127 ETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
             G I  + + R    + G        E  +L   + N      + Q+   I+G   E  
Sbjct: 121 YKGLI--WDEARHTAAMNGNELLFTPIEFSLLGLFLNNLNYVFTREQLIERIWGHASE-T 177

Query: 186 EENVVESHISKLRKKLRN 203
           E+  V+SHI  LR+KLR 
Sbjct: 178 EDRTVDSHIRNLREKLRK 195


>gi|229916895|ref|YP_002885541.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229468324|gb|ACQ70096.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 229

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 9/146 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +RA S +P++ +S        L     G DD + KP   +E+  RV A  RR+ +
Sbjct: 65  QLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRVSM 124

Query: 122 SNNR-AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                AET   GP ++  D  +  V GE   L  +E  +L   + N  + ++K  +F+ +
Sbjct: 125 MEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQV 184

Query: 178 YG--LFDEAVEENVVESHISKLRKKL 201
           +G   F     +N V  HI +LR+K+
Sbjct: 185 WGESFFG---SDNTVMVHIRRLREKV 207


>gi|167841171|ref|ZP_02467855.1| response regulator [Burkholderia thailandensis MSMB43]
          Length = 229

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 20/175 (11%)

Query: 57  GEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G   L L R +R  AH   P++ ++   +L   L  F+ G DD + KP   +E+ AR+ A
Sbjct: 56  GMDGLTLCRKLREEAHRDTPVLMLTARDALDDKLSGFEHGADDYLVKPFSLKEVAARLDA 115

Query: 115 IYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           + +R         L+ ++ R + G + V   GR  ++Q +          +L  LM +  
Sbjct: 116 LIKRYRGRVAVPELRFADVRLDLGTLAVERAGRPIKLQPKCL-------HLLRILMLSPA 168

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + ++ + ++G  DE    + + +HI  LRK L      + +++   LGY +
Sbjct: 169 RVFTRAELETEVWG--DELPGSDTLRAHIYMLRKALTRPGEAELIETVHGLGYRL 221


>gi|160894201|ref|ZP_02074979.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50]
 gi|156864234|gb|EDO57665.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50]
          Length = 253

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 7/144 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ ++         + +D+G DD ++KP    E++ +V A+ RR  +   R 
Sbjct: 91  IREFSSVPVLFLTAKTQEPDKNEAYDTGGDDFLSKPFEQSELVRKVKALIRRYNIYKGRE 150

Query: 127 ET--GPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   G +RV +   DP         EV  L  +E  +L +L+ NRG+     +++  I+ 
Sbjct: 151 DNNDGILRVGAISIDPYKRVVTKDNEVIHLTDKEFALLFFLVKNRGRSWNLDELYENIWQ 210

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
                   N V  H+ +LR+K+ +
Sbjct: 211 EKYLPSSSNTVMVHVLRLRQKIED 234


>gi|148553326|ref|YP_001260908.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148498516|gb|ABQ66770.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 235

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 12/154 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL R +R  S +P I ++              G DD + KP   R ++AR+ AI RR +
Sbjct: 62  MELLRRLREKSSIPTIFLTSKDDELDEALGLAMGADDYITKPFSQRLLIARIRAILRRTE 121

Query: 121 V---SNNRAETGPIRVFSDGR---DP-----EVQGEVFPLPRRERRILEYLMANRGKRVA 169
           V     + A+  P+     GR   DP     +  G+   L   E  ILE L    G   +
Sbjct: 122 VRATPEDEADATPVEKIVRGRLEMDPARHRVQWDGKDVTLTVTEFLILEALAQRPGFVKS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + Q+    Y   D  V++  ++SHI +LR+K R 
Sbjct: 182 RDQLMDTAYQ-DDVYVDDRTIDSHIKRLRRKFRQ 214


>gi|110834552|ref|YP_693411.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
 gi|110647663|emb|CAL17139.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
          Length = 246

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 15/157 (9%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   LEL   +R  S VP+I +S     Q  +    +G DD + KP    E+  RV A+ 
Sbjct: 72  GLNGLELLNALRQQSPVPVIVVSALGDEQARIQGLINGADDYLPKPFSMAELAVRVDAVL 131

Query: 117 RRLKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR+ +   R E       G + +         Q     L   E R+L+ L+ +RG  ++K
Sbjct: 132 RRVALERVRPEEPQWESVGKLVLCDHSMAAFYQETDLGLTNTEFRLLQVLLEHRGAVLSK 191

Query: 171 TQIFSAI----YGLFDEAVEENVVESHISKLRKKLRN 203
             ++ A+     G  D +     ++ HIS +R+KLR+
Sbjct: 192 PFLYQAVLHRGCGRHDRS-----LDLHISHVRRKLRD 223


>gi|56696508|ref|YP_166865.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
 gi|56678245|gb|AAV94911.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
          Length = 226

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 20/171 (11%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + +RA     P+I ++   ++   +    +G DD + KP   +E+LARV A+ RR 
Sbjct: 62  LALIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRRP 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEV---------QGEVFPLPRRERRILEYLMANRGKRVAK 170
           +      +T    V +  RD E+          G    L  RE +ILE+ +  + + + +
Sbjct: 122 Q------DTQEATVLA-CRDLEMDLMRRKVTRAGREITLTPREFQILEFFLRRKNRVITR 174

Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           T +   ++   FD     N+V+ HISKLR+++        + + R  GY I
Sbjct: 175 TMLLEGVWDYHFDP--NTNIVDVHISKLRRQIDEGAEVPLITTVRGAGYMI 223


>gi|315658044|ref|ZP_07910917.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315496934|gb|EFU85256.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 249

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 23/219 (10%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ- 72
           GYI       V+ +G  +LE  E +Q     D+  ++  L  K    +E+ + IR+    
Sbjct: 39  GYIV-----EVAYDGEEALEKVEKVQP----DLIVLDVMLPKKDG--IEVCKTIRSDKNL 87

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-- 130
           VP++ ++        +   + G DD + KP   RE++ARV AI RR +  N  A      
Sbjct: 88  VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQFVNEAANDAANE 147

Query: 131 -------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  IR+  +  +     E+  L  +E  +L YL+  +G+ + +  + ++++  ++ 
Sbjct: 148 EDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREHMLNSVWN-YEF 206

Query: 184 AVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 207 AGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 245


>gi|312960053|ref|ZP_07774566.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311285710|gb|EFQ64278.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 222

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 7/148 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   S    ++   +G DD ++KP H  E+  R+ A+ RR     N+       
Sbjct: 73  TPVLILTARDSWAERIEGLKAGADDYLSKPFHPEELHLRIQALLRRSHGQANQPTLQAAG 132

Query: 133 VFSD-GRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +  D GR   ++ GE   L   E R+L Y M +  + ++K+ +   +Y    E  + NV+
Sbjct: 133 LHLDEGRQCVLRDGEEIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLYDGETER-DSNVL 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E H++ LR+    KLG   ++++R  GY
Sbjct: 192 EVHVNHLRR----KLGRSVIETRRGQGY 215


>gi|311111412|ref|ZP_07712809.1| DNA-binding response regulator VicR [Lactobacillus gasseri MV-22]
 gi|311066566|gb|EFQ46906.1| DNA-binding response regulator VicR [Lactobacillus gasseri MV-22]
          Length = 214

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 41  LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 100

Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++    E           + +  +    E  GE   L  RE  +L YL  + G+ + +  
Sbjct: 101 LTQKATEDDEDKNITISNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREH 160

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +      +  ++R +GY +
Sbjct: 161 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYV 208


>gi|309806296|ref|ZP_07700309.1| putative response regulator protein GraR [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167280|gb|EFO69446.1| putative response regulator protein GraR [Lactobacillus iners
           LactinV 03V1-b]
          Length = 216

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 5/147 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123
           IR  S VP+I I+ +      +     G D+ + KPI     +A++ A+ RR    KV +
Sbjct: 66  IRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYDYKVGS 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +    G +++       E +  V  L R E  ILE L   + K   +  I +  +   D 
Sbjct: 126 DSIMYGDLKLNLSVAHLEGKNFVLELTRTELLILEILFNFKNKIAKREDIINYCWQ-GDA 184

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPV 210
            +++N +  +I++LRKKL+  +G+D +
Sbjct: 185 FIDDNTLAVNIARLRKKLKT-VGYDEL 210


>gi|297159383|gb|ADI09095.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 234

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 33/228 (14%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL +DG++     DG++ LE F +           R D++ ++  +   G   + L R I
Sbjct: 22  ALERDGFVVTAAPDGLTGLERFRA----------DRPDIALLDVMV--PGLDGVSLCRRI 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------- 119
           R  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR         
Sbjct: 70  RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHASGPGR 129

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +   +  E G +R      DPE       G+   L   E R+L    A  G  +++ +
Sbjct: 130 GAEAEPDEPEGGVLRFGDLEVDPEGMEVRRAGQQVALTPTEMRLLLEFSAVPGTVLSRDR 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++  +    +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 190 LLERVWD-YGWGGDTRVVDVHV----QRLRGKIGQDRIETVRGFGYKL 232


>gi|295703773|ref|YP_003596848.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801432|gb|ADF38498.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 239

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 14/168 (8%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L RI + ++ +P+I ++   +  TTLD     D G +D + KP    E+LARV    R  
Sbjct: 65  LRRIRKKNAYLPVILLT---ARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRHG 121

Query: 120 KVSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +     E   +        V  + R+   + +   L  +E  +L YL+ N+   +++  
Sbjct: 122 AIIQEVTEKKDVHLSIEDLSVNLETREVIRKNKTIILTPKEYDLLVYLLKNQNIVLSREN 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G +D   E NVV+ +I  LRKK+  ++    + + R +GY I
Sbjct: 182 ILLTVWG-YDYEGETNVVDVYIGHLRKKIEEEINSPLIRTVRGVGYVI 228


>gi|284038331|ref|YP_003388261.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817624|gb|ADB39462.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 223

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G+   E+ + +RA    VP++ +S     +  +   D G  D + KP    E+LAR+  +
Sbjct: 56  GQTGFEVLQNLRAFGLTVPVMILSALSDPERVVQGLDLGAVDYLRKPFDFNELLARIRVL 115

Query: 116 YRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            RR  + N+   R     +R+ S   +         L  RE  +LE LM   G+ V K +
Sbjct: 116 QRRATMGNDVVLRVADLEMRLVS--HEVHKNNVHLELTNREFALLELLMRRAGQLVTKNE 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I   ++ + D  +  NV+E HI +LRKK+
Sbjct: 174 IAEKVWAM-DFDMGSNVIEVHIYQLRKKI 201


>gi|256826858|ref|YP_003150817.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583001|gb|ACU94135.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 220

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 18/224 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFN------SLEFEEWLQSSAREDVSAIEAFLIG 55
            +++DD + + D    +   DG S++ FN      S +   +        +  I+ F   
Sbjct: 4   LLVVDDESAITDLLQRILVRDGYSVDAFNDPTAVLSCDLSRYDLIICDVMMPEIDGF--- 60

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
                 EL   IR H   P++ ++        +     G DD + KP    E+ A+VAA 
Sbjct: 61  ------ELVERIRDHVDAPILFLTAKVGESDAVQGLAIGADDYIRKPFGTAELRAKVAAH 114

Query: 116 YRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR  +V  +    G +R     R+  V   +  L   E  I EYL  + G+  ++ QI 
Sbjct: 115 LRRENRVYTHAFTLGAVRFDMGARELFVNDALVALTPTEYAICEYLAQHPGQVFSRQQIR 174

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             + G   +A  ++ +  H+S  R KL+ + G   +++    GY
Sbjct: 175 KQVLGWASDA-GDDAISMHVSNARTKLK-RAGATSIETVWGTGY 216


>gi|218671332|ref|ZP_03521002.1| two-component response regulator protein [Rhizobium etli GR56]
          Length = 222

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETG 129
             P++ +S    +   +    +G DD + KP    E+LARV  + RR            G
Sbjct: 95  HTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDVVYRVG 154

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++   FD   + N
Sbjct: 155 DLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP--QTN 212

Query: 189 VVESHISKLR 198
           V++ H+S+LR
Sbjct: 213 VIDVHVSRLR 222


>gi|207725050|ref|YP_002255447.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206590280|emb|CAQ37241.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 228

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 15/166 (9%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           R IRA SQVP++ ++        +   D G DD V KP    E++AR+ AI RR      
Sbjct: 65  RRIRAASQVPVVMLTARGDNIDRISGLDLGADDYVPKPCTPGELVARLRAILRRTSGADA 124

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK----TQIFS 175
             +      GP+ ++   R     G    L   E  +LE L  + G+ V+K     Q F 
Sbjct: 125 GAAAGAIHAGPLALWPTSRRATWLGNALELTGTEFSLLEVLARHAGRLVSKEDISLQAFD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
                FD       ++ HIS +R+KL  +    P + S R +GY +
Sbjct: 185 RPLARFDRR-----IDVHISSIRQKLGQRPDGQPWIVSVRGMGYQL 225


>gi|145589846|ref|YP_001156443.1| two component transcriptional regulator [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048252|gb|ABP34879.1| two component transcriptional regulator, winged helix family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 230

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 9/156 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S VP+I +S        ++  + G DD ++KP    E++ARV A  RR  +++N
Sbjct: 69  RDIRTWSDVPIIVVSARTHEDDKIEALNIGADDYLSKPFSPGELVARVRAQLRRRSMASN 128

Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ET    G I V    R  +   E+  L   E R+L +L+ +    +   Q+   ++G 
Sbjct: 129 KGETVFKFGNINVDLTTRVVKRDDELLHLTPIEYRLLSFLITHPNIVLTHRQLLLGVWGP 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            D     + V  ++  LRKK+ +    DP   K  +
Sbjct: 189 ND-VENHHYVRIYMGTLRKKIED----DPAQPKHVI 219


>gi|222053517|ref|YP_002535879.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221562806|gb|ACM18778.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 224

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 14/174 (8%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           +++ K + +  L  +    +  P++ ++   S++  +   DSG DD + KP    E+LAR
Sbjct: 52  WMLPKMDGLSVLKELKSQKNTTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLAR 111

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRG 165
           V A+ RR    + +     IR FSD R   V  +V+       L  +E  +LEY M N  
Sbjct: 112 VRALLRR----SEQDRGAEIR-FSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPH 166

Query: 166 KRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + + +T I   ++   FD     N+++ +++ LRKK+        + + R +GY
Sbjct: 167 EVLTRTMIAEHVWDYTFDSFT--NIIDVYVNYLRKKIDRDADKKLIHTVRGVGY 218


>gi|56540671|gb|AAV92789.1| PmrA [Salmonella enterica]
          Length = 222

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRR--- 118

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            NN+ E+    G + +          G+   L  +E  +L  LM   G  V +  +++ I
Sbjct: 119 HNNQGESELAVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|32267196|ref|NP_861228.1| hypothetical protein HH1697 [Helicobacter hepaticus ATCC 51449]
 gi|32263249|gb|AAP78294.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 226

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 13/152 (8%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           + P+I IS   S +  +  F  G DD V+KP     +L R+ A  R    S    E   I
Sbjct: 72  RTPVIIISAQTSAENEIRAFKEGADDFVSKPFSLEVLLIRIQARLRFWGSSVIEIEDLVI 131

Query: 132 -----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
                ++   G++ EV+G+ F        +L +L  +R + V+K Q+  AI+    E V 
Sbjct: 132 NPDEEKITYRGQEIEVKGKPF-------EVLTHLARHRDQIVSKEQLLDAIWE-EPELVT 183

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            NV+E  I+++R+K+   L    +++ R  GY
Sbjct: 184 PNVIEVAINQIRQKMDKPLNIGTIETVRRRGY 215


>gi|159902689|ref|YP_001550033.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887865|gb|ABX08079.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 248

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 26/165 (15%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR        
Sbjct: 74  LRKESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRIEKEHIAG 133

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++V++ R +T   +VF       + G  F L       LE L++  G+  ++ +
Sbjct: 134 LPNSGVIQVASFRIDTNKRKVFRGDERIRLTGMEFSL-------LELLVSRSGEPFSRGE 186

Query: 173 IFSAIYGLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           I   ++G   E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 187 ILKEVWGYTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 227


>gi|319939442|ref|ZP_08013802.1| response regulator protein [Streptococcus anginosus 1_2_62CV]
 gi|319811428|gb|EFW07723.1| response regulator protein [Streptococcus anginosus 1_2_62CV]
          Length = 218

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR  SQVP++ ++      T L  F+  + D V KP     ++ R+  I+R   
Sbjct: 61  LDVLKEIRKTSQVPVMMLTALDDEYTQLVSFNHLISDYVTKPFSPLILMKRIENIFRS-T 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+ +    G +RV  D      Q E     ++E  I++ L   +   V + Q+ + I+G 
Sbjct: 120 VTESEIVVGDLRVSIDDCTVYWQEEKMSPTKKEYEIIQALAKRKNHLVTRDQLMNTIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKL 201
            +  ++  V+++H+  +RKK+
Sbjct: 180 SE--LDSRVLDNHVKNIRKKI 198


>gi|315643972|ref|ZP_07897142.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280347|gb|EFU43636.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 238

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 25/186 (13%)

Query: 27  EGFNSLEFEEWLQSSAREDVSAIEA---------FLIGKGEKVLELPRIIRAHSQVPLIG 77
           EGFN +    +  SS +E +S I A          ++  G      P+I R++    ++ 
Sbjct: 25  EGFNRI----YTASSCKEALSEIAAHGADIVLLDVMLPDGTGFDLCPQI-RSYGSPHILF 79

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI--RVFS 135
           ++   S    L  F  G DD V KP +  EI AR+ A  RR       +   P+  R + 
Sbjct: 80  LTAKASDLDVLTGFAMGGDDYVTKPFNPLEIAARIKARLRRGGFGMMPSAEQPVIQRAWD 139

Query: 136 DGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GR        +  V GE  P P +  ++L Y   + G   +K+Q++ A++G+ D   E+
Sbjct: 140 FGRFRVDESAGELTVLGEPVPCPAQVFQLLLYFCKHPGVVFSKSQLYEAVWGI-DGIGED 198

Query: 188 NVVESH 193
           N V  H
Sbjct: 199 NTVMVH 204


>gi|311069529|ref|YP_003974452.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870046|gb|ADP33521.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 231

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 79/147 (53%), Gaps = 17/147 (11%)

Query: 65  RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           R+IR+ S VP++ +S  D+P+ +  ++     G DD + KP H   ++A++ AI+RR  V
Sbjct: 65  RMIRSRSNVPILFLSSRDHPADMVMSMQL---GADDFIQKPFHFDVLIAKIQAIFRR--V 119

Query: 122 SNNRAETGPIRVFS----DGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  +E   ++ +     D     V  E     L + E  IL+ L+  + K V++ ++  
Sbjct: 120 YHYNSEPIVLKTWCGATVDSEQNLVSNETGSIELTKNEMFILKRLIEQKNKIVSREELIR 179

Query: 176 AIYGLFDEA-VEENVVESHISKLRKKL 201
           +++   DE  V +N +  ++++LRKKL
Sbjct: 180 SLWN--DERFVSDNTLTVNLNRLRKKL 204


>gi|308187241|ref|YP_003931372.1| Transcriptional regulatory protein basR/pmrA [Pantoea vagans C9-1]
 gi|308057751|gb|ADO09923.1| Transcriptional regulatory protein basR/pmrA [Pantoea vagans C9-1]
          Length = 226

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+ R     P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR +  
Sbjct: 63  LIRLRRQKKMTPVLILTARDTISERIAGLDAGADDYLIKPFSLDELLARIRALIRRHVNQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++    G + +    R   +   +  L  +E  IL  LM   G  V +  ++  IY  +
Sbjct: 123 GDSHVRVGALALDMTHRQITLSDVLLDLTPKEFAILSRLMLKAGNPVHREILYQDIYN-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     N +E HI      LR+K+G   + + R  GY++
Sbjct: 182 ETEPSTNTLEVHI----HNLRDKIGKSAIRTVRGFGYAL 216


>gi|258543656|ref|YP_003189089.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634734|dbj|BAI00710.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637790|dbj|BAI03759.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640844|dbj|BAI06806.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643899|dbj|BAI09854.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646954|dbj|BAI12902.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650007|dbj|BAI15948.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652997|dbj|BAI18931.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656051|dbj|BAI21978.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-12]
          Length = 261

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 4/147 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++L   R ++  + V +I   + P ++T    F +G DD +  P    E+ AR+ AI 
Sbjct: 59  GYEILSTLRSLKLATPVIVISPVNNPEVKT--KAFAAGADDYILDPFDATELTARIQAIL 116

Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR+   ++  A+ G + V  +     V  +   L  +E  ILE L+  +G    K    +
Sbjct: 117 RRVHGYAHPVAQIGDLTVNFNSHTVTVNNQPVHLTGKEFAILELLVLRKGIAQTKETFLN 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR 202
            +YG  DE  +  +++  I KLRKKL+
Sbjct: 177 HLYGGRDEP-DIKIIDVFICKLRKKLQ 202


>gi|148266303|ref|YP_001233009.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146399803|gb|ABQ28436.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 224

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 14/174 (8%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           +++ K + +  L  +    +  P++ ++   S++  +   DSG DD + KP    E+LAR
Sbjct: 52  WMLPKQDGLSVLKELRNQKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLAR 111

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRG 165
           V A+ RR    + +     IR FSD R   V  +V+       L  +E  +LEY M N  
Sbjct: 112 VRALLRR----SEQDRGAEIR-FSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPH 166

Query: 166 KRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + + +T I   ++   FD     N+++ +++ LRKK+        + + R +GY
Sbjct: 167 EVLTRTMIAEHVWDYTFDSFT--NIIDVYVNYLRKKIDRDADKKLIHTVRGVGY 218


>gi|71066478|ref|YP_265205.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039463|gb|AAZ19771.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 234

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 9/153 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           S++P+I ++      + +   D+G DD + KP   RE+++R+ A+ RR   S+  +   P
Sbjct: 77  SEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLRR---SSALSGDKP 133

Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           I +     D + Q       +  +   E R+L + M++  +   + Q+   ++G  +  +
Sbjct: 134 INIGKLTLDAKSQRFMVGDNIIDMGPTEYRLLAFFMSHPERAYTRAQLLDQVWG-GNVYI 192

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E+  ++ H+ +LR  LR       + + R  GY
Sbjct: 193 EDRTIDVHVKRLRTLLRPYDCDTLIQTVRGTGY 225


>gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 226

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 9/184 (4%)

Query: 24  VSLEGFNSLEFEE---WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80
           +S EGF+++   +    ++++ RE    I   L+  G   +++ R IR  S VP+I ++ 
Sbjct: 22  LSAEGFDTVAVTDGALAVETAEREQPDLILLDLMLPGMNGIDICRAIRQDSAVPIIMLTA 81

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDG 137
                  +   +SG DD VNKP   +E++AR+ A  RR    +  AET   G + +   G
Sbjct: 82  KTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRR--TDDEPAETLEVGDLTIDVPG 139

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
              +   E   L   E  +L  L     +   + ++   ++G +  A +  +V  H+ +L
Sbjct: 140 HTVKRGDEEISLTPLEFDLLLELARKPQQVFTREELLGKVWG-YRHASDTRLVNVHVQRL 198

Query: 198 RKKL 201
           R K+
Sbjct: 199 RAKI 202


>gi|329923464|ref|ZP_08278946.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
 gi|328941356|gb|EGG37650.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
          Length = 231

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 13/170 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  R IR  S +P++ +S        +    +G DD + KP +  E+  RV  + RR  
Sbjct: 63  IDTCRRIRETSAIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRRST 122

Query: 121 VSN---NRAETGPIRVFSDGRD-------PEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             N   ++ ++  IR+  DG D           G    L  RE  IL  L    G+  + 
Sbjct: 123 QYNVDLHQGDSDRIRI--DGLDINRTTHEVTANGHAISLTAREFEILYLLARQPGRIFSA 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             IF  ++      V  N V  HIS LR KL  +LG+  + +   +GY I
Sbjct: 181 EDIFQQVWK-EKYYVSNNTVMVHISNLRDKLEKELGYKLIQTVWGVGYKI 229


>gi|320325389|gb|EFW81454.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 229

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +   +   NS E  E    S R D+  ++  +       +
Sbjct: 4   VLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEVEALSGRHDIVVLDIMM--PRISGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IRA SQVP+I ++        +   + G DD V KP    E++AR+ AI RR++ 
Sbjct: 62  EVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRA 121

Query: 121 ---VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              V   R   + G + ++   R+   QG    L   E  +LE L  + G+ V+K  +  
Sbjct: 122 VPVVETVREVIQAGDLTLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSM 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGY 218
              G    A  +  ++ HIS +R KL  RN      + S R LGY
Sbjct: 182 NAMG-RPLARYDRSIDVHISSIRHKLGPRND-NQSWIQSVRNLGY 224


>gi|315039139|ref|YP_004032707.1| two-component response regulator [Lactobacillus amylovorus GRL
           1112]
 gi|325957610|ref|YP_004293022.1| two-component response regulator [Lactobacillus acidophilus 30SC]
 gi|312277272|gb|ADQ59912.1| two-component response regulator [Lactobacillus amylovorus GRL
           1112]
 gi|325334175|gb|ADZ08083.1| two-component response regulator [Lactobacillus acidophilus 30SC]
 gi|327184255|gb|AEA32702.1| two-component response regulator [Lactobacillus amylovorus GRL
           1118]
          Length = 228

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR  
Sbjct: 61  IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 120

Query: 120 -KVSNNRA---ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
            +V + +    E GP+ +  D  + + + G+   L   E  IL YL+A+   RV +  +I
Sbjct: 121 KQVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGIL-YLLASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K++   G  D + +   +GY ++
Sbjct: 180 FERVWQQ-ESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|309782919|ref|ZP_07677639.1| DNA-binding response regulator TctD [Ralstonia sp. 5_7_47FAA]
 gi|308918343|gb|EFP64020.1| DNA-binding response regulator TctD [Ralstonia sp. 5_7_47FAA]
          Length = 233

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----E 127
           + P++ ++   +L   +   ++G DD + KP    E+ AR+ A+ RR   S  RA     
Sbjct: 72  RTPVLILTAQGALDERVRGLNAGADDFLTKPFALSELEARLMALIRR---SRGRAFPRLR 128

Query: 128 TGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            GP+  F  GR    + GE   L  RE   L  L+   G+ ++K  +F  ++ L D    
Sbjct: 129 CGPLE-FDTGRKAFLLSGEPLALTPREHAALSALLHKTGQPISKVHLFDKVFNL-DSDSS 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + VE  + +LRKKL    G   V + R LGY ++  
Sbjct: 187 PDAVEVVVHRLRKKLAGT-GVQIV-TVRGLGYLLEAG 221


>gi|260892897|ref|YP_003238994.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865038|gb|ACX52144.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 231

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 14/214 (6%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67
            L K+G+  L   DG       +LE    +    R DV  ++  L    G  V EL R  
Sbjct: 20  TLSKEGFQVLVAADGP-----QALE----MARQHRPDVIILDLMLPALDGFTVCELLRRD 70

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
            +  ++P+I +S   + +  +   D G DD V KP   RE+ ARV A  RR +    R +
Sbjct: 71  PSLKEIPVIVLSARGTEEDKVRGLDIGADDYVTKPFSPRELAARVKAQLRRRQSQAEREK 130

Query: 128 T--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              GP+ +  +      +     L  +E  +L +L  + G+  ++ Q+   I+G +D   
Sbjct: 131 LVYGPLVIDRERYAVAWKEHWQYLAPKEFELLYFLATHPGRVFSREQLLDQIWG-YDYLG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
               V+ H+  +R+KL    G    +++ R +GY
Sbjct: 190 GPRTVDVHVRYIRQKLEQMPGAPQLIETVRGVGY 223


>gi|322421546|ref|YP_004200769.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M18]
 gi|320127933|gb|ADW15493.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M18]
          Length = 224

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 4/155 (2%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AE 127
           A + VP+I +S   ++   +   + G DD + KP    E+LAR+  I RR  +  +   +
Sbjct: 69  AGNDVPVIFLSARDAVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRHPLQQSELLK 128

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
              + +          G    L  +E ++L  ++  RG+ + +T I   ++G+ FD   +
Sbjct: 129 MADLELDLIRHKARRGGHSLDLTVKEFQLLALMLRRRGEVLTRTTISEQVWGINFDS--D 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            NVV+  I +LRKK+ +      + + R +GY ID
Sbjct: 187 TNVVDVAIRRLRKKVDDPFPLKLIHTIRGVGYVID 221


>gi|238924396|ref|YP_002937912.1| response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Eubacterium rectale ATCC 33656]
 gi|238876071|gb|ACR75778.1| response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Eubacterium rectale ATCC 33656]
          Length = 220

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 1/140 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R     P+I IS    +   +     G DD + KP    E+LARV  + RR + 
Sbjct: 62  ELLDYVRRIGDTPVIIISAMGQVDERIRGLRMGADDYICKPFQIGELLARVETVLRRTQR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R E   + +    R     GE   L  +E  +L  LM N+   +++ +++  ++   
Sbjct: 122 MAERLEIEDVAIDPKSRTVIKAGEQVELTVKEFDLLYELMKNKNVALSRRRLYELVWQ-E 180

Query: 182 DEAVEENVVESHISKLRKKL 201
           +   E   ++SH+ +LRKKL
Sbjct: 181 EYTGETRTLDSHVQRLRKKL 200


>gi|307151820|ref|YP_003887204.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982048|gb|ADN13929.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 250

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 22/204 (10%)

Query: 9   ALVKDGYIALFGDDGVS----LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           AL ++GY      DG S    L+G +++E E+        D+  ++  L       L++ 
Sbjct: 37  ALEEEGYEVKSASDGRSALELLQGSDAVESEKLF------DLLVLDLML--PSVNGLDIC 88

Query: 65  RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R+IR   + +P++ +S   S    +   + G DD + KP   RE++AR  A+ RR   S 
Sbjct: 89  RLIRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCRALLRRQSFST 148

Query: 124 NRAETGPIRVFSD----GRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             A   P+R F D     ++    V+GE   L  +E R+LE  M+   +  ++ Q+   +
Sbjct: 149 ISA--NPVRKFRDIMLYTQECRVLVRGEEINLSPKEFRLLELFMSYPRRVWSREQLIEQV 206

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G  D   +   V+ HI  LR+KL
Sbjct: 207 WGP-DFLGDTKTVDVHIRWLREKL 229


>gi|172036545|ref|YP_001803046.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171697999|gb|ACB50980.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. ATCC 51142]
          Length = 225

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 6/134 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-----NRAE 127
            P++ ++   +L   +   D+G DD + KP   RE++ARV A+ RR   S      NR +
Sbjct: 73  APVLFLTAKDTLDDRVIGLDAGADDYLVKPFELRELMARVRALLRRSAASVETNGINRLK 132

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              + + SD +    QG +  L  +E ++L Y M +  + +   QI+ +++    E    
Sbjct: 133 VADLELDSDNQVAYRQGRMVNLSDKEVKLLAYFMEHPHQLLTHDQIYQSLWE-EPEKPSS 191

Query: 188 NVVESHISKLRKKL 201
           NV+ + I  LR+K+
Sbjct: 192 NVLAALIRLLRRKI 205


>gi|220927704|ref|YP_002504613.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998032|gb|ACL74633.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 225

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 7/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           I+  S+ P++ +S        +  F+ G+DD V KP   +E++ R+  I +R + +++  
Sbjct: 67  IKKFSKAPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRINVIVKRSRGTSDTE 126

Query: 127 ETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               I  F        GR   +  E   +  +E  +  YL+ NRG  + + ++ + ++G 
Sbjct: 127 NKKEIFTFKGLTVDFTGRLVYIDNEKIDMSPKEYDLFFYLVKNRGIALTRERLITDVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +D   ++  +++HI  LRK L
Sbjct: 186 YDFFGDDRTLDTHIKLLRKSL 206


>gi|39995559|ref|NP_951510.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39982322|gb|AAR33783.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298504564|gb|ADI83287.1| winged-helix transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 224

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +  P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR    + +     
Sbjct: 71  NSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRR----SEQDRGAE 126

Query: 131 IRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDE 183
           IR F+D R   V  +V+       L  +E  +LEY M N  + + +T I   ++   FD 
Sbjct: 127 IR-FADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWDYTFDS 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               N+++ +++ LRKK+  +     + + R +GY
Sbjct: 186 FT--NIIDVYVNYLRKKIDRESDKKLIHTVRGVGY 218


>gi|331083007|ref|ZP_08332126.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330399744|gb|EGG79405.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 235

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           IR  S +P++ ++   + +  +     G DD + KP    E+ ARV ++ RR    N   
Sbjct: 71  IREVSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSLIRRYTTLNPAF 130

Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +E        D       R   V+G +  L  +E  +L +L +N+G+   K QI++ ++ 
Sbjct: 131 SEETDCICLKDMTIDRGNRSVTVRGALVELTGKEFDLLVFLASNKGRIFTKKQIYTQVWE 190

Query: 180 LFDE-AVEENVVESHISKLRKKL 201
             DE A +++ + S ISKLRKK+
Sbjct: 191 --DEYAFDDSNIMSFISKLRKKI 211


>gi|325292356|ref|YP_004278220.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325060209|gb|ADY63900.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 252

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 5/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETG 129
           + P++ +S    +   +    +G DD + KP    E+LAR+  + RR            G
Sbjct: 99  ETPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARIEVLGRRKGKPEQDMVYRVG 158

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +     D    G+   L  RE R+LEYLM N G+ V +T +   ++   FD   + N
Sbjct: 159 DLELDRLSHDVRRGGKEILLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP--QTN 216

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V++ H+S+LR K+        + + R  GY +
Sbjct: 217 VIDVHVSRLRSKIEKDFEKPLLKTIRGAGYMM 248


>gi|291525161|emb|CBK90748.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
          Length = 220

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 1/140 (0%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R     P+I IS    +   +     G DD + KP    E+LARV  + RR + 
Sbjct: 62  ELLDYVRRIGDTPVIIISAMGQVDERIRGLRMGADDYICKPFQIGELLARVETVLRRTQR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R E   + +    R     GE   L  +E  +L  LM N+   +++ +++  ++   
Sbjct: 122 MAERLEIEDVAIDPKSRTVIKAGEQVELTVKEFDLLYELMKNKNVALSRRRLYELVWQ-E 180

Query: 182 DEAVEENVVESHISKLRKKL 201
           +   E   ++SH+ +LRKKL
Sbjct: 181 EYTGETRTLDSHVQRLRKKL 200


>gi|269216464|ref|ZP_06160318.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
 gi|269129993|gb|EEZ61075.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
          Length = 239

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 12/161 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE+V    R+IR +S VP+I ++    ++  +   + G DD + KP   RE++ARV A+ 
Sbjct: 65  GERVC---RVIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALL 121

Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR+   +       E G + +   G    V  +   L   E ++L  L    G+  ++ +
Sbjct: 122 RRVHADSEPQREVLEFGELTIDVSGHKVLVNDKEVDLTASEFKLLTTLSRYPGRVYSRME 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +   + G +D    E  ++SH+    K LR K+G +P + K
Sbjct: 182 LVEKVLG-YDFEGYERTIDSHV----KNLRAKIGDNPRNPK 217


>gi|261406687|ref|YP_003242928.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283150|gb|ACX65121.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 223

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 7/159 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122
           IR  S VP++ +S   S    +   + G DD + KP H   + A+V A+ RR      + 
Sbjct: 66  IREISNVPVLFLSSRDSPMDVVMSVNMGGDDYIQKPFHMDVLTAKVNALLRRTYSYSDMQ 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N  E   +    D      + E   L + E  IL+ LM  +G  V + +I   ++   D
Sbjct: 126 SNVFEHEGVVFLPDKGTLTYETEQAELTKTEVSILKILMQQKGTVVDRKKIMRHLWQ--D 183

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           E+ V+EN +  +I +LRKKL      + + +K+  GY I
Sbjct: 184 ESFVDENTLTVNIVRLRKKLAGIGKENWIVTKKGQGYMI 222


>gi|254785137|ref|YP_003072565.1| regulatory protein BvrR [Teredinibacter turnerae T7901]
 gi|237685602|gb|ACR12866.1| regulatory protein BvrR [Teredinibacter turnerae T7901]
          Length = 232

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 12/182 (6%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103
           D++ I+  L  + E   EL R +R+ +  +P+I ++   S    +     G DD + K I
Sbjct: 48  DLAIIDVGLGDEIEGGFELCRDLRSRAPSLPIIFLTARDSEFDVVSGLRLGADDYLTKDI 107

Query: 104 HHREILARVAAIYRRLK-----VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRIL 157
               +LAR+ A++RR+      +S +R    G + +  D    + QG +  L   E  I+
Sbjct: 108 SQPHMLARITALFRRIDALQQPLSQDREMVRGMLTMNMDRMTAQWQGHLLDLTVTELWIV 167

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFL 216
             L  + G    + Q+  A   + D    +N + SHI ++RKK + +   FD + +   +
Sbjct: 168 HSLAQHPGHVKNRQQLMDAANVVLD----DNTITSHIKRIRKKFKERDATFDCIHTAYGM 223

Query: 217 GY 218
           GY
Sbjct: 224 GY 225


>gi|228938339|ref|ZP_04100951.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228971217|ref|ZP_04131847.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228977826|ref|ZP_04138209.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228781888|gb|EEM30083.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228788496|gb|EEM36445.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228821328|gb|EEM67341.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326938847|gb|AEA14743.1| two-component response regulator yvrH [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 234

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 21/230 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 7   LLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLIKQNNYDLIILDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR   
Sbjct: 65  DICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                E  P  + S GR        +  V G +     +  ++L +   N     +K +I
Sbjct: 125 QTVPHEQKPHSI-SFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +  ++G      ++N V  HI KLR+K+ +    DP     + + R LGY
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEH----DPSKPEYIKTVRGLGY 229


>gi|167893004|ref|ZP_02480406.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
          Length = 237

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       +  L  RE  +LE L+   G+ V+K Q
Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQ 173

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 219


>gi|170720972|ref|YP_001748660.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758975|gb|ACA72291.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 222

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 7/148 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--RAETGP 130
            P++ ++   S    ++   +G DD ++KP H  E+  R+ A+ RR K   N  R E   
Sbjct: 73  TPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAKGLANQPRLEAAG 132

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    +    +G    L   E R+L Y M +  + ++K+ +   +Y    E  + NV+
Sbjct: 133 LHLDESRQCVSREGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLYDGETER-DSNVL 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E H++ LR+    KLG   ++++R  GY
Sbjct: 192 EVHVNHLRR----KLGRSVIETRRGQGY 215


>gi|56540673|gb|AAV92790.1| PmrA [Salmonella enterica]
          Length = 222

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L  + + + 
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPDE-DGLH 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  FLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRR--- 118

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            NN+ E+    G + +          G+   L  +E  +L  LM   G  V +  +++ I
Sbjct: 119 HNNQGESELAVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  +D     N +E HI      LR+K+G   + + R  GY +
Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216


>gi|82546749|ref|YP_410696.1| DNA-binding response regulator CreB [Shigella boydii Sb227]
 gi|81248160|gb|ABB68868.1| catabolic regulation response regulator [Shigella boydii Sb227]
 gi|320176861|gb|EFW51889.1| Two-component response regulator CreB [Shigella dysenteriae CDC
           74-1112]
 gi|320183579|gb|EFW58424.1| Two-component response regulator CreB [Shigella flexneri CDC
           796-83]
 gi|332090397|gb|EGI95495.1| transcriptional regulatory protein creB [Shigella boydii 3594-74]
          Length = 221

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 7/161 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +++  H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  ++
Sbjct: 60  QLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKFSS 119

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    I  F +  +P  Q   F  P    R E  +L+ L+ + G+  ++ Q+  +++  
Sbjct: 120 PSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWED 178

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +  +   V++HI  L  KLR       P+++ R +GYS+
Sbjct: 179 AQDTYDRT-VDTHIKTLHAKLRAINPDLSPINTHRGMGYSL 218


>gi|108763277|ref|YP_632939.1| DNA-binding response regulator PhoP1 [Myxococcus xanthus DK 1622]
 gi|45720780|emb|CAG17624.1| response regulator phoP1 [Myxococcus xanthus]
 gi|108467157|gb|ABF92342.1| DNA-binding response regulator phoP1 [Myxococcus xanthus DK 1622]
          Length = 226

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 16/138 (11%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEV 142
            + G DD V KP   RE+L RV A+ RR       AE GP  V + G            V
Sbjct: 94  LELGADDYVVKPFSVRELLLRVKAVLRRAD-----AEDGPSAVLASGDISLDTTRHQVRV 148

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +GE   L   E R+L  L+    +   +  + S ++G+  E +    V++HI +LR+KL 
Sbjct: 149 KGEEVLLTALEFRLLRTLLERSDRVQTREVLLSDVWGIQAE-IHTRTVDTHIKRLREKLG 207

Query: 203 NKLGFDPVDSKRFLGYSI 220
                D +++ R +GY +
Sbjct: 208 P--AGDIIETVRGVGYKL 223


>gi|24475509|dbj|BAC22721.1| czcR [Wolbachia endosymbiont of Callosobruchus chinensis]
          Length = 183

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 11/173 (6%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEKVLELPRI 66
           AL  DG+   F D   S + +N+      + SS  +  D+  ++  L G  +    L R+
Sbjct: 19  ALTSDGH---FCDVVTSAQDYNN-----NMVSSNEDYYDLVILDIHLPGDIDGYDILLRL 70

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNR 125
             A  +VP++ +S   ++         G DD + KP H  E+LAR  AI RR K    + 
Sbjct: 71  RSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARXKAIVRRTKGHPESV 130

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + G I +  D R  E +G+   L  +E  ++E L   +G  + K    + +Y
Sbjct: 131 IKIGNININFDHRIVEXKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLNHLY 183


>gi|313498604|gb|ADR59970.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 279

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R++R  SQ +P++ ++        +   + G DD V KP   R +LARV  + RR 
Sbjct: 107 LQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS 166

Query: 120 KVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            V+  R +      G +R+    R    +GE   L   E  +L  L  N G+ + + +I 
Sbjct: 167 SVNEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRIL 226

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
             + G+     + + V+  ISKLR+K  +  G       V  K +L   ++W
Sbjct: 227 QQLRGIEFNGTDRS-VDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEW 277


>gi|296450961|ref|ZP_06892708.1| response regulator [Clostridium difficile NAP08]
 gi|296879073|ref|ZP_06903069.1| response regulator [Clostridium difficile NAP07]
 gi|296260179|gb|EFH07027.1| response regulator [Clostridium difficile NAP08]
 gi|296429946|gb|EFH15797.1| response regulator [Clostridium difficile NAP07]
          Length = 244

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 19/163 (11%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + IR +  QV +I ++        ++ F SG DD + KP   +E+L RV+A+ RR+
Sbjct: 75  IEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALIRRV 134

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V ++   + P  +  D R     G+   L   E  I++YL++N  + +++ QI 
Sbjct: 135 AKDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQIL 194

Query: 175 SAIYG---LFD-EAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             ++G   L+D + V+ N+         +++RNK+  DP   K
Sbjct: 195 DEVWGTNYLYDFKIVDVNI---------RRIRNKIEDDPSKPK 228


>gi|229018178|ref|ZP_04175051.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
 gi|228743103|gb|EEL93230.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
          Length = 224

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 103/214 (48%), Gaps = 28/214 (13%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAH 70
           K+G+  L   DG           EE LQ    E +  AI  +++ K   +  + + I+ +
Sbjct: 31  KEGFEVLLAKDG-----------EEALQIFYDEKIDLAILDWMMPKSSGIT-VCQEIKKN 78

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127
           S V ++ ++     +  L    SG D+ V KP H   ++ R   + +    ++V + + +
Sbjct: 79  SSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRAKKLVQHEDVIQVQDLKID 138

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
               +V+ + ++ ++        + E ++++  + ++G  + + ++   ++G FD   EE
Sbjct: 139 FTKNKVYKNEKELDI-------TKTELQLIKCFLNHKGTILTRKKLLDIVWG-FDYFGEE 190

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V++H+ +LRK    K+G + + + R LGYS++
Sbjct: 191 RTVDTHVRRLRK----KIGENIIKTHRGLGYSLE 220


>gi|291326185|ref|ZP_06123519.2| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131]
 gi|291315319|gb|EFE55772.1| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131]
          Length = 237

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 8/156 (5%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   + + R +R  S VP+I ++        L   + G DD + KP   RE++ARV
Sbjct: 60  LMLPGMDGISVCRELRKFSDVPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARV 119

Query: 113 AAIYRR----LKVSNNRAET-GPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRG 165
             I RR    +  SN++  +    ++  D    +V+   ++  L   E R+L+++  N G
Sbjct: 120 KTILRRCQPNMTTSNSQTNSNNQTKLIIDENAFQVRYGSQLLELTPAEFRLLKFMSDNAG 179

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++ Q+   +Y      V +  ++SH+  LR+KL
Sbjct: 180 MVFSRDQLLDILYD-DHRVVTDRTIDSHVKNLRRKL 214


>gi|240146374|ref|ZP_04744975.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|257201483|gb|EEU99767.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|291535777|emb|CBL08889.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 230

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 9/207 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++   + + EE L+ +       +   ++       E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDC--AYDGEEALKMATENAYDMVLLDIMLPKMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   S
Sbjct: 64  VCQHIREFSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAAS 123

Query: 123 NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +       E G +++  + R   + G+   L  +E  +LE L+ N  K   +  + + 
Sbjct: 124 QPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           ++G ++   +   V+ H+ +LR+K+ +
Sbjct: 184 VWG-YEYPGDVRTVDVHVRRLREKIES 209


>gi|206559345|ref|YP_002230106.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198035383|emb|CAR51259.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 242

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 24/170 (14%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+   +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR    
Sbjct: 63  LKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR---- 118

Query: 123 NNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q+  
Sbjct: 119 --GAGGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVD 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
            +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 177 HLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRISTVRGLGYCLE 219


>gi|161507256|ref|YP_001577210.1| response regulator [Lactobacillus helveticus DPC 4571]
 gi|160348245|gb|ABX26919.1| Response regulator [Lactobacillus helveticus DPC 4571]
          Length = 240

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 17/175 (9%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR+
Sbjct: 64  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123

Query: 120 KV-------SNNRAE----TGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKR 167
            +        NN  E    T  +++  D R+     + V  L  +E  +L Y MA + K+
Sbjct: 124 MMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLL-YTMAQKPKQ 182

Query: 168 V-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           V ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 183 VFSRDQLLDLVWG-YEYYGEERTVDAHIKKLRQKL-EKVGAKVIQTVWGVGYKFD 235


>gi|149376013|ref|ZP_01893779.1| DNA-binding response regulator GltR [Marinobacter algicola DG893]
 gi|149359650|gb|EDM48108.1| DNA-binding response regulator GltR [Marinobacter algicola DG893]
          Length = 238

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 15/188 (7%)

Query: 40  SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           S AR D+  ++  L   G+    L R IR HSQVP+I ++        +   + G DD +
Sbjct: 46  SEARVDLIVLDVML--PGDDGFTLCREIREHSQVPIIMLTASSDETDRVVGLEIGADDYL 103

Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS----DGRDPEV---QGEVFPLPRR 152
            KP   RE+ ARV A+ RR     NRA+      F     D +  E+   QGE  PL   
Sbjct: 104 AKPFSARELQARVKALLRRSGF--NRADNPRFVCFDRWRLDTQAHELISDQGETTPLSGA 161

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--V 210
           +  +L+  + +  + + +  I     G  +    + VV+  +S+LR++L ++ G  P  +
Sbjct: 162 DFSLLQLFLTHPNEVLDRDTISGVTRG-RESMPLDRVVDVAVSRLRQRLGDQ-GRSPRLI 219

Query: 211 DSKRFLGY 218
            + R  GY
Sbjct: 220 KTVRGAGY 227


>gi|148273519|ref|YP_001223080.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831449|emb|CAN02409.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 283

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 8/147 (5%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R IRAH   S VP++ ++     +  ++  D+G DD + KP   RE++ RV A+ R
Sbjct: 90  LEVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLR 149

Query: 118 RL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R     V       GP  +    R+    G +  L  RE  +L +L+ N  +   +  + 
Sbjct: 150 RTVPEAVPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLL 209

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G   E  + + V  H+ +LR+K+
Sbjct: 210 RQVWGW--EIGDLSTVTVHVRRLREKI 234


>gi|167647929|ref|YP_001685592.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350359|gb|ABZ73094.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 243

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 14/170 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA   +P++ +S        +   + G DD V KP   RE++ARV AI RR  
Sbjct: 65  LEVCRRLRAQGDLPILFLSSRDDEIDRVLGIELGADDYVVKPFSPREVVARVQAILRR-- 122

Query: 121 VSNNRAETGPI-RVFSDGR---DPE------VQGEVFPLPRRERRILEYLMANRGKRVAK 170
                 E  P   +   GR   DPE       + EV  L   E  IL+ L A   K  ++
Sbjct: 123 TGAKAGEAAPADGLIVRGRLTLDPEAWSARWAEAEV-SLTVTEFTILKTLAATPTKVFSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I   + G    AV +  ++SH+  LR K     G D ++++  +GY +
Sbjct: 182 DAIIDRLRG-PGFAVTDRTIDSHVRNLRAKFAGVGGHDVIETRAGIGYRL 230


>gi|73542175|ref|YP_296695.1| heavy metal response regulator [Ralstonia eutropha JMP134]
 gi|72119588|gb|AAZ61851.1| Heavy metal response regulator [Ralstonia eutropha JMP134]
          Length = 228

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 5/156 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRA 126
           A ++VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  ++ S +R 
Sbjct: 69  AGNRVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGSVQASVDRV 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           + G + +    R     G    L  +E  +LE L+  RG+ + ++ I S ++ + FD   
Sbjct: 129 QVGDLVLDLARRRASRGGRRIVLTSKEFSLLELLVRRRGEVLPRSLIASQVWDMNFDS-- 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 187 DSNVIDVAIRRLRAKIDDDFDTKLIQTVRGMGYVLE 222


>gi|15893854|ref|NP_347203.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023431|gb|AAK78543.1|AE007571_9 Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           ATCC 824]
 gi|325507981|gb|ADZ19617.1| Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           EA 2018]
          Length = 233

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 43/245 (17%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV-- 60
           +++DD   ++D  I ++ ++    EGFN ++ E           + +EA  I K  +V  
Sbjct: 7   LVVDDEKEIRD-LIGIYLNN----EGFNVIKAE-----------NGVEALEILKDTEVQL 50

Query: 61  ----LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108
               + +P++        IR     P+I +S        +    +G DD ++KP +  E+
Sbjct: 51  VLLDIMMPKMDGITTCMKIREDKNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLEL 110

Query: 109 LARVAAIYRRLKVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
           +ARV +  RR    N+  E+       G I + +D  + ++      L +RE  IL  L 
Sbjct: 111 IARVKSQIRRYTKLNSTYESNSANIEVGEITINTDTHEVKIGDRTVSLTKREFDILVLLS 170

Query: 162 ANRGKRVAKTQIFSAIYG--LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
            N+G   +  +I+ +++    +D     N V  HI K+R+K+ +N    + + +   +GY
Sbjct: 171 RNKGVVFSTEKIYESVWHEEFYD---CHNTVMVHIRKIREKIEKNPRKPEYIKTVWGVGY 227

Query: 219 SIDWN 223
            I+ N
Sbjct: 228 KIEKN 232


>gi|117924789|ref|YP_865406.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608545|gb|ABK44000.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 236

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 16/188 (8%)

Query: 27  EGFNS---LEFEEWLQSSARE---DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGIS 79
           EGFN+   L  EE ++ +  E   D+  ++  L G  G +V    R       +P+I ++
Sbjct: 25  EGFNARVALTGEEGMRIATVERWPDLVLLDLMLPGVSGIEVCRRMREEDGTRTMPVIMLT 84

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRV 133
                   +  F++G DD V KP   RE++ R+ AI RR  V   +AE+      G ++V
Sbjct: 85  ARGEEIDKVMGFEAGADDYVVKPFKVRELVLRIRAILRR--VQPEQAESAALVTFGRLKV 142

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
             +G    V GE   L   E ++L   ++ +G+   +  + + ++G+ +  V+   V++H
Sbjct: 143 DLEGHRVWVDGEESSLTAMEFKLLTTFLSRKGRVQNRDTLLNDVWGV-NAFVQTRTVDAH 201

Query: 194 ISKLRKKL 201
           + +LR+KL
Sbjct: 202 VKRLREKL 209


>gi|320327470|gb|EFW83483.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330877267|gb|EGH11416.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 229

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +   +   NS E  E    S R D+  ++  +       +
Sbjct: 4   VLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEVEALSGRHDIVVLDIMM--PRISGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IRA SQVP+I ++        +   + G DD V KP    E++AR+ AI RR++ 
Sbjct: 62  EVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRA 121

Query: 121 ---VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              V   R   + G + ++   R+   QG    L   E  +LE L  + G+ V+K  +  
Sbjct: 122 VPVVETVREVIQAGDLTLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSM 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGY 218
              G    A  +  ++ HIS +R KL  RN      + S R LGY
Sbjct: 182 NALG-RPLARYDRSIDVHISSIRHKLGPRND-NQSWIQSVRNLGY 224


>gi|256376590|ref|YP_003100250.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255920893|gb|ACU36404.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 229

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124
           IR  S VP++ ++ +      +     G DD + KP   +E+LAR+ AI RR +   + +
Sbjct: 67  IRDVSDVPVLLLTAHGMEADKVRGLRGGADDYLTKPFSAKELLARIEAILRRAEGATAAS 126

Query: 125 RAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +AE    G +R+    R   V GE   +   E R+L   + ++G  ++  Q+   ++   
Sbjct: 127 KAEVYDDGLVRMDHRARRVYVNGEEVDVNATEYRLLSVFVQHKGAVLSPGQLLDKVWN-D 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +    V+  + +LR+KL       P+ + R +GY  D
Sbjct: 186 PTGIGAERVKFAVMRLRRKLNWSADESPIRAARGMGYRYD 225


>gi|255305635|ref|ZP_05349807.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 229

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 18/153 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR+ S VP+I  +   S    +   + G DD + KP    E+LAR+ A  RR  
Sbjct: 60  FEVLKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119

Query: 121 V-SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           V S++R     +  + D             G    L   E  I++ L  N+G+  +K Q+
Sbjct: 120 VYSSSRNSQDMVIQYKDLIINISKYVVSKNGIDLNLTHTEFEIVKLLATNQGRAFSKEQL 179

Query: 174 FSAI-----YGLFDEAVEENVVESHISKLRKKL 201
           ++ I     YG       ENV+ +HI++LR KL
Sbjct: 180 YNTIWKEPYYG------NENVLNTHINRLRNKL 206


>gi|170690170|ref|ZP_02881337.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
 gi|170144605|gb|EDT12766.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
          Length = 223

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 20/170 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R   Q P++ ++   ++   ++  + G DD ++KP  + E LAR+ ++ RR   
Sbjct: 61  ELLRRLRKEKQTPVLLLTARDTVADKVEGLELGADDYLSKPFAYAEFLARIRSLLRR--- 117

Query: 122 SNNRAETGPIRVFSDGRDPEV--------QGEV-FPLPRRERRILEYLMANRGKRVAKTQ 172
              RA    +R+     D EV        +G++   L  +E  +L+ L   +G+ + +T 
Sbjct: 118 -APRAVKDVLRI----ADMEVDFIKRRVKRGDLRIDLTAQEFSLLQLLAERQGEVLTRTF 172

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I S I+ + FD   + NVV++ + +LR K+ N      + + R +GY ++
Sbjct: 173 ITSQIWDMNFDS--DTNVVDAAVKRLRAKIDNSFETKLLHTVRGMGYVLE 220


>gi|15888321|ref|NP_354002.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15155989|gb|AAK86787.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 252

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 5/152 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETG 129
           + P++ +S    +   +    +G DD + KP    E+LAR+  + RR            G
Sbjct: 99  ETPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARIEVLGRRKGKPEQDMIYRVG 158

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188
            + +     D    G+   L  RE R+LEYLM N G+ V +T +   ++   FD   + N
Sbjct: 159 DLELDRLSHDVRRGGKEILLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP--QTN 216

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V++ H+S+LR K+        + + R  GY +
Sbjct: 217 VIDVHVSRLRSKIEKDFEKPLLKTIRGAGYMM 248


>gi|146297552|ref|YP_001181323.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411128|gb|ABP68132.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 230

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 83/163 (50%), Gaps = 8/163 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           +R  S+VP+I I+        +   + G DD + KP   RE++AR+ A  RR    +N  
Sbjct: 69  VREFSEVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTSQQSNSD 128

Query: 126 ---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + G + +  +  + +  G+V  L  RE  +L++LM+ +G+  ++ ++   ++  ++
Sbjct: 129 GKVLKAGKLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKVWD-YE 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSIDWN 223
              +   V+  + +LR+K+ +    +PV   +KR +GY  + N
Sbjct: 188 YYGDVRTVDVTVRRLREKIEDNPS-EPVFILTKRGIGYYFNPN 229


>gi|329849746|ref|ZP_08264592.1| transcriptional regulatory protein ompR [Asticcacaulis biprosthecum
           C19]
 gi|328841657|gb|EGF91227.1| transcriptional regulatory protein ompR [Asticcacaulis biprosthecum
           C19]
          Length = 283

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 42  AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
            R D++ +    +  GE  L + + ++     P+I +S        +   + G DD + K
Sbjct: 95  TRGDIALVVLDYMMPGEDGLSICKRLQEQGGPPVIMVSARGEEIDRIVGLELGADDYIAK 154

Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-------GEVFPLPRRER 154
           P H RE+LAR+ A+ RR +      +  P+  F       ++       G    L   E 
Sbjct: 155 PFHPRELLARIRAVLRRREARTGGDKGAPVTTFFGWSLDNIKRTLTRPDGIQVALSNAEF 214

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
            +L   +   G+ +++ QI   ++G   ++ +   ++  IS+LR+KL +    D + + R
Sbjct: 215 ELLRVFLDRPGRALSRDQILDYLHGPNADSFDR-AIDVQISRLRRKLSDDHNEDIIRTIR 273

Query: 215 FLGY 218
            +GY
Sbjct: 274 GIGY 277


>gi|327438778|dbj|BAK15143.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 234

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 9/161 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R +R  ++ P++ IS        +   ++G DD + KP ++  +LA++ +  RR      
Sbjct: 67  RELRQFTKCPILFISARSGEMDQIFALENGGDDFITKPFNYEIVLAKIRSHLRRTYGEYS 126

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +   G + ++ +  + +++  V PL ++E  IL  LM    K V++ Q+   ++
Sbjct: 127 ARQEERKIVQGQLTLYLERMELQLKELVVPLQKKECVILGLLMGQAPKVVSREQLLEELW 186

Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              D+A V+EN +  +++++RKKL +      +++ R  GY
Sbjct: 187 D--DQAFVDENTLNVNMTRVRKKLADYGISSVIETVRGAGY 225


>gi|325272774|ref|ZP_08139118.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324102081|gb|EGB99583.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 232

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 83/164 (50%), Gaps = 8/164 (4%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L + R  R     P++ ++        +   D G DD V KP+  R +LAR+
Sbjct: 57  LMLPGEDGLSICRRARNQYPGPILMLTARSDELDQIHGLDLGADDYVCKPVRPRLLLARI 116

Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            A+ RR +  +++ +    G + + +  R+  +  ++  L   E  +L  L +N G+ ++
Sbjct: 117 QALLRRSEALDSKRQDLAFGALHIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLS 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           + QIF+A+ G+  +  ++  ++  IS++R     K+G DP+  +
Sbjct: 177 REQIFTALRGVGYDG-QDRSIDIRISRIRP----KIGDDPLQPR 215


>gi|241665358|ref|YP_002983717.1| transcriptional regulator [Ralstonia pickettii 12D]
 gi|240867385|gb|ACS65045.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 279

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 12/152 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           +P++ ++   ++   +   ++G DD + KP   +E+ AR+ A+ RR      RA+     
Sbjct: 118 IPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAARMHALLRR---QGGRADPLLRH 174

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +    R+    G    L  RE  +L  L+A  GK  +  Q+   +YG +DE V  N
Sbjct: 175 GDVVLNPVTREVLRDGVPVKLSGREFAVLHALLARPGKVWSIAQLQDNLYG-WDEEVGSN 233

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            VE +I  LRKKL + L    + + R +GY I
Sbjct: 234 TVEVYIHALRKKLGSHL----IQNIRGVGYVI 261


>gi|229131521|ref|ZP_04260411.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228651936|gb|EEL07883.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 223

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VS 122
           IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K    VS
Sbjct: 67  IRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKKDGFVS 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N  E    +         V GE   L   E  +L   + N+ +  ++  +   I+G + 
Sbjct: 127 FNGIEWDKTK-----HTVTVYGERISLTPIEFSLLGLFLQNKNRAYSRDDLIEKIWG-YQ 180

Query: 183 EAVEENVVESHISKLRKKLRNK 204
             +E   ++SHI  +R KLR K
Sbjct: 181 TDIEYRTIDSHIRNIRDKLRKK 202


>gi|269957269|ref|YP_003327058.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305950|gb|ACZ31500.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 39/217 (17%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRAHSQVPLIGISD 80
           L  E W    AR+ +SA++A    + + V           LE+ R I+A    P++ ++ 
Sbjct: 35  LTAEGWRVEVARDGLSAVDAAARLRPDAVVLDVMLPGIDGLEVTRRIQADHPTPILMLTA 94

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140
                  L     G DD + KP   RE++ARV A+ RR++ +     T P         P
Sbjct: 95  RDDETDMLVGLGVGADDYMTKPFSMRELVARVKALLRRVERAQQAVVTSP------ADPP 148

Query: 141 EVQGEVFPLPRRERRI---------------LEYLMANRGKRV-AKTQIFSAIYGLFDEA 184
            V G+V  + R +RR+               L  ++A+  K V  + ++ + ++   D A
Sbjct: 149 LVMGDVT-IDRAQRRVHRAGEEVHLTPTEFELLVMLASSPKTVLTRERLLAEVWDWAD-A 206

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                V+SHI    K LR KLG D + +   +GY+ +
Sbjct: 207 SGTRTVDSHI----KALRRKLGPDLIRTVHGVGYAFE 239


>gi|224419137|ref|ZP_03657143.1| two-component response regulator [Helicobacter canadensis MIT
           98-5491]
 gi|253828072|ref|ZP_04870957.1| response regulator [Helicobacter canadensis MIT 98-5491]
 gi|313142643|ref|ZP_07804836.1| DNA-binding response regulator [Helicobacter canadensis MIT
           98-5491]
 gi|253511478|gb|EES90137.1| response regulator [Helicobacter canadensis MIT 98-5491]
 gi|313131674|gb|EFR49291.1| DNA-binding response regulator [Helicobacter canadensis MIT
           98-5491]
          Length = 222

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 2/141 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL + IR  S +P+I  S    + + +  F+ G DD + K     E++AR+ A+ +R  
Sbjct: 62  LELCKKIRQISDLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALLKRYS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N     G + V ++     ++G    L   E  IL  L++N+GK  ++  +  AI  +
Sbjct: 122 -ANQVIHYGDLEVDNNKHKVTLEGYSIDLTPAEFEILNLLISNKGKPYSRESLSQAISSI 180

Query: 181 FDEAVEENVVESHISKLRKKL 201
             ++   + +++HI  LR KL
Sbjct: 181 APDSSLRS-IDTHIRNLRAKL 200


>gi|241664447|ref|YP_002982807.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|240866474|gb|ACS64135.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 233

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----E 127
           + P++ ++   +L   +   ++G DD + KP    E+ AR+ A+ RR   S  RA     
Sbjct: 72  RTPVLILTAQGALDERVRGLNAGADDFLTKPFALSELEARLMALIRR---SRGRAFPRLR 128

Query: 128 TGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            GP+  F  GR    + GE   L  RE   L  L+   G+ ++K  +F  ++ L D    
Sbjct: 129 CGPLE-FDTGRKAFLLSGEPLALTPREHAALSALLHKTGQPISKVHLFDKVFNL-DSDSS 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + VE  + +LRKKL    G   V + R LGY ++  
Sbjct: 187 PDAVEVVVHRLRKKLAGT-GVQIV-TVRGLGYLLEAG 221


>gi|33864259|ref|NP_895819.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641039|emb|CAE22168.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 248

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 26/165 (15%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR        
Sbjct: 74  LRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKEHVAG 133

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++V+  R +T   +VF       + G  F L       LE L++  G+  ++ +
Sbjct: 134 IPNSGVIQVAELRVDTNKRQVFRGDERIRLTGMEFSL-------LELLVSRSGEPFSRGE 186

Query: 173 IFSAIYGLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           I   ++G   E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 187 ILKEVWGYTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 227


>gi|328958774|ref|YP_004376160.1| regulatory protein VanR [Carnobacterium sp. 17-4]
 gi|328675098|gb|AEB31144.1| regulatory protein VanR [Carnobacterium sp. 17-4]
          Length = 229

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN-- 123
           +R   Q+P++ +S   +    +    +G DD V KP +  E++AR+ ++ RR   ++N  
Sbjct: 67  VRKEMQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRSNYMTNSQ 126

Query: 124 --NRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179
             N+ E GP+ +  +  +   + GE   L   E  IL YL+A+   RV +  +IF  ++ 
Sbjct: 127 EQNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSI 220
             +  V    V  H+S LR K+    G + V    + +GY I
Sbjct: 186 Q-ESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226


>gi|317056279|ref|YP_004104746.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448548|gb|ADU22112.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 236

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 105/244 (43%), Gaps = 37/244 (15%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V+ DDR +V    IA      + LEG+ ++   + +++  +   + I+  LI      
Sbjct: 8   ILVVDDDRDIV--AAIAKL----LELEGYKTVRAYDGIEALEKLSENDIQLILID----- 56

Query: 61  LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           + +PR+        IR    +P+I +S        +     G DD + KP +  E+ ARV
Sbjct: 57  VMMPRLDGLSAIMKIRDKRNIPIIVLSAKSEDTDKILGLSMGADDYITKPYNPMELTARV 116

Query: 113 AAIYRRLKV-----SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
            +  RR        S N+ +    G + +    +   V GE   L   E +ILE LM N 
Sbjct: 117 KSSLRRYMQLGDIGSINKTDVIKIGGLELDKGAKSITVDGEPVKLTATELKILELLMENA 176

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYS 219
           G   +  +I+  ++     AV EN V  HI    + +R K+  DP + +       +GY 
Sbjct: 177 GHVFSAEEIYRRVWNEDAYAV-ENTVMVHI----RHIREKIEIDPKEPRYLKVVWGIGYK 231

Query: 220 IDWN 223
           I+ N
Sbjct: 232 IEKN 235


>gi|301056576|ref|YP_003794787.1| putative DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378745|gb|ADK07649.1| putative DNA-binding response regulator [Bacillus cereus biovar
           anthracis str. CI]
          Length = 225

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKMTPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSN- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-HNVVVNPNVVDLYIGYIRKKLKCEKKDRYIQTIHGRGYSM 223


>gi|294629505|ref|ZP_06708065.1| two-component system response regulator [Streptomyces sp. e14]
 gi|292832838|gb|EFF91187.1| two-component system response regulator [Streptomyces sp. e14]
          Length = 237

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 8/143 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +++R  + VP+I  +        +   ++G DD + KP     + AR+AA+ RR +    
Sbjct: 68  KMLRGITDVPVIVATARDDEAEVVRLLNAGADDYLTKPFSVEHLFARMAAVLRRARSGPA 127

Query: 125 RAETGPI-RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            A   P+ RV     DP     E+ G    L RRE  +L +L    G  VA+ ++ + ++
Sbjct: 128 EAAPSPVLRVGGLTVDPLRRQAELDGVRLDLTRREFDLLAFLAGRPGVVVARRELLAEVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
                  ++  ++ H+S LR+KL
Sbjct: 188 Q--QSYGDDQTIDVHLSWLRRKL 208


>gi|260436657|ref|ZP_05790627.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
 gi|260414531|gb|EEX07827.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
          Length = 272

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 26/165 (15%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR        
Sbjct: 98  LRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKEQVAG 157

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++VS+ R +T   +VF       + G  F L       LE L++  G+   + +
Sbjct: 158 IPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSL-------LELLVSRSGEPFNRGE 210

Query: 173 IFSAIYGLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           I   ++G   E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 211 ILKEVWGYTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 251


>gi|229160972|ref|ZP_04288961.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228622540|gb|EEK79377.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 228

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 71  LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 131 IQVGNVLLNRKTFEVTTGEQAVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 190 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 225


>gi|227486676|ref|ZP_03916992.1| possible response regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227235388|gb|EEI85403.1| possible response regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 228

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 79/159 (49%), Gaps = 3/159 (1%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R ++  S +P++ ++    ++  +   + G D+ + KP+  R ++ R+  +      
Sbjct: 68  DICRSLKEKSNIPILMLTSRIGIEDEIKGLEIGADEYLAKPVDTRRLILRMEKLLNLFDH 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    G +R+         +     LP+ E  I++ LM +  + V K  +  A++   
Sbjct: 128 FQDIISVGELRLELSTCKLSYKDAYLILPQTEADIVKKLMESYPEIVTKDDLLEAVWSTI 187

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++EN+++ +I++LRKKL+N   ++ + +KR  GY +
Sbjct: 188 --YIDENILQVNITRLRKKLKNLSPYN-IYNKRGSGYGL 223


>gi|308233471|ref|ZP_07664208.1| two component transcriptional regulator, winged helix family
           protein [Atopobium vaginae DSM 15829]
 gi|328943477|ref|ZP_08240942.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
 gi|327491446|gb|EGF23220.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
          Length = 241

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 17/215 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDG--VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGE 58
            +L++D   ++D   A    +G  V   G      EE+ + S   D+  ++  L    GE
Sbjct: 8   ILLVEDEKTIRDAVAAYLEREGYFVRSVGDGQSALEEFEKHSF--DLIILDLMLPKLSGE 65

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +V    R +R  S VP+I ++    ++  +   + G DD + KP   RE++ARV A+ RR
Sbjct: 66  RVC---RAVRETSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRR 122

Query: 119 LKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +  A    + G + +   G    V+ +   L   E ++L  L    G+   + ++ 
Sbjct: 123 AHTESEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARFPGRVYTRMELV 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             + G +D    E  ++SH+    K LR KLG DP
Sbjct: 183 EKVLG-YDFEGYERTIDSHV----KNLRAKLGDDP 212


>gi|160873434|ref|YP_001552750.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|160858956|gb|ABX47490.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315265663|gb|ADT92516.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 235

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 14/145 (9%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---------GPIRVFSDGRDPE 141
            + G DD + KP+  R +LA++ A  RR +++ + AE          G + + +  R   
Sbjct: 92  LEIGADDYLLKPVKPRMLLAKIKAFLRRDRLAESIAENQQVSEYISFGQLAINTQKRSVT 151

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +      L   E  +L  L  N G  +++  I   + G + + +E   V++HI +LRKKL
Sbjct: 152 LADVAIKLTDGEYDLLITLAKNAGNILSRNDIVEQVKGYYYDGIERG-VDNHICQLRKKL 210

Query: 202 ----RNKLGFDPVDSKRFLGYSIDW 222
               RN      + SK +L  S  W
Sbjct: 211 GDDARNPFKIKTIRSKGYLFVSSGW 235


>gi|73541975|ref|YP_296495.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
 gi|72119388|gb|AAZ61651.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
          Length = 231

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 97/218 (44%), Gaps = 11/218 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++    A    +G ++   +SL+    +++  R+    I    +  G+ V +
Sbjct: 10  LLVEDEPHIRRFVRAALQAEGCTVREADSLK-RGLIEAGTRQPDLVILDLGLPDGDGV-D 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  ++VP++ +S   + +  +   D+G DD + KP    E++AR+  + RR   S
Sbjct: 68  LIREVRTWTEVPVLVLSARSAEEDKIGALDAGADDYLTKPFGVGELVARLRVLLRRHARS 127

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N         G ++V    R     GE   L   E R+L  L+A+RGK +   ++   ++
Sbjct: 128 NPHGSAQIAFGEVQVDLANRMVTRAGEPVHLTPIEYRLLSVLIAHRGKVMTHRELLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           G        +    ++      LR+KL  DP      L
Sbjct: 188 G-----PSHSESSQYLRVYMGHLRHKLEADPAQPAHLL 220


>gi|53721717|ref|YP_110702.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|126443912|ref|YP_001062018.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126458594|ref|YP_001074970.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134278879|ref|ZP_01765592.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167722901|ref|ZP_02406137.1| response regulator protein [Burkholderia pseudomallei DM98]
 gi|167741882|ref|ZP_02414656.1| response regulator protein [Burkholderia pseudomallei 14]
 gi|167819064|ref|ZP_02450744.1| response regulator protein [Burkholderia pseudomallei 91]
 gi|167848919|ref|ZP_02474427.1| response regulator protein [Burkholderia pseudomallei B7210]
 gi|167897524|ref|ZP_02484926.1| response regulator protein [Burkholderia pseudomallei 7894]
 gi|167905878|ref|ZP_02493083.1| response regulator protein [Burkholderia pseudomallei NCTC 13177]
 gi|167914184|ref|ZP_02501275.1| response regulator protein [Burkholderia pseudomallei 112]
 gi|167922095|ref|ZP_02509186.1| response regulator protein [Burkholderia pseudomallei BCC215]
 gi|217419131|ref|ZP_03450638.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|237507446|ref|ZP_04520161.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242312817|ref|ZP_04811834.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254183056|ref|ZP_04889648.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254189719|ref|ZP_04896228.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193143|ref|ZP_04899578.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254264092|ref|ZP_04954957.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254299993|ref|ZP_04967439.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|52212131|emb|CAH38148.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|126223403|gb|ABN86908.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126232362|gb|ABN95775.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134249298|gb|EBA49379.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|157810175|gb|EDO87345.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157937396|gb|EDO93066.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|169649897|gb|EDS82590.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184213589|gb|EDU10632.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217398435|gb|EEC38450.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|234999651|gb|EEP49075.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242136056|gb|EES22459.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254215094|gb|EET04479.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 240

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 8/150 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IRA S VP++ ++    +   +   ++G DD V KPI  R ++AR  A+ RR++
Sbjct: 67  MEVCRRIRAFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQ 126

Query: 121 ----VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               V    +ET   G + +    R    +GE   L   E  +L  L    G  +++  I
Sbjct: 127 PGASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              + G+  + ++ + V+S ISKLR++  +
Sbjct: 187 LKQLRGIEFDGIDRS-VDSGISKLRRRFED 215


>gi|323484205|ref|ZP_08089574.1| hypothetical protein HMPREF9474_01325 [Clostridium symbiosum
           WAL-14163]
 gi|323692080|ref|ZP_08106327.1| signal transduction regulator [Clostridium symbiosum WAL-14673]
 gi|323402447|gb|EGA94776.1| hypothetical protein HMPREF9474_01325 [Clostridium symbiosum
           WAL-14163]
 gi|323503880|gb|EGB19695.1| signal transduction regulator [Clostridium symbiosum WAL-14673]
          Length = 240

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 6/131 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVF 147
            D+G DD + KP    E+ ARV  + +R   ++  +     G +++  + R+    GE  
Sbjct: 105 LDNGADDYMTKPFGILELSARVRNLLKRSGTVREESTCLAAGDVKIDKETREVVSCGEKV 164

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L  +E  +L YLM +  + V + ++   I+G +D   E   ++ HI  LR+KL++    
Sbjct: 165 ELTLKEFELLSYLMEHMNRVVTRDELLDNIWG-YDYDGETRTLDMHIKTLRQKLKD--AG 221

Query: 208 DPVDSKRFLGY 218
             + + R +GY
Sbjct: 222 QQIKTVRGVGY 232


>gi|294679014|ref|YP_003579629.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacter capsulatus SB 1003]
 gi|294477834|gb|ADE87222.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacter capsulatus SB 1003]
          Length = 230

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 20/172 (11%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----- 112
           +E+ R ++A+ +   +P+I +S        +   ++G DD V KP    E++AR+     
Sbjct: 66  IEICRRVKANPETRSIPIIMLSARSEESDRVRGLETGADDYVVKPYSVVELMARLRTQLR 125

Query: 113 ----AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
               A +  RL   +   +    RVF DG       +   L   E R+L  LM   G+  
Sbjct: 126 RTRPATMGERLVFDDIILDAAEHRVFRDG-------QPLKLGPTEFRLLSTLMEKPGRVW 178

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + Q+   ++G  D  V+   ++ H+ +LRK L    G DPV + R  GYS+
Sbjct: 179 TRDQLLDRVWG-RDIYVDTRTIDVHVGRLRKALMVNGGADPVRTVRGTGYSL 229


>gi|312198972|ref|YP_004019033.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311230308|gb|ADP83163.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 220

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132
           P + +S   S+   +  F +G DD + KP    E+LAR+  + RR  V   R     P+R
Sbjct: 78  PALLLSAKGSVADKVLGFGAGADDYLTKPFAIDELLARLDVLVRRSPVPAARELVLDPVR 137

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
               G    V     PL   E R+L  L++  G+ V +  + S+ +      V EN ++S
Sbjct: 138 HVVAGPHAAV-----PLSPTEYRLLAALVSRPGEVVRRASLISSAWP-PGAVVRENTLDS 191

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++++LR+ LR       + + R +GY +D
Sbjct: 192 YVTRLRRTLRVVGAQASIATARGVGYRLD 220


>gi|262277654|ref|ZP_06055447.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
 gi|262224757|gb|EEY75216.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
          Length = 226

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 15/157 (9%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130
           +P+I ++     +  +   ++G DD + KP  H E++AR+ A+ RR K  V+ ++A    
Sbjct: 77  LPIIMLTAKGQEEDKVAALNAGADDYITKPFGHAELVARINALLRRSKPRVAEDKA---- 132

Query: 131 IRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             V+ D     +Q +VF       L   E R+L++ + N  +  ++ Q+ + I+   +  
Sbjct: 133 --VYEDLVIDRIQRKVFRNETQIDLGPTEYRMLDFFIKNPKRVYSRDQLLTNIWP-DNIN 189

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           VE   V+ HI +LRK +      + + + R  GYS+D
Sbjct: 190 VENRTVDVHIRRLRKAINLDGTKELIRTVRSAGYSLD 226


>gi|251787958|ref|YP_003002679.1| DNA-binding transcriptional regulator BasR [Dickeya zeae Ech1591]
 gi|247536579|gb|ACT05200.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 232

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 15/222 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL+++G +    ++G   +  ++ +  + L +SA   +  ++  L  +    L
Sbjct: 3   LLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPDEDGLTL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R  R H Q P++ ++   ++   +   D G DD + KP    E  ARV A+ RR + 
Sbjct: 63  -LGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQG 121

Query: 122 SNNRAETGPIRVFS---DGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSA 176
           S++      IRV +   D  + +V  +  P  L  +E  IL  L+   G +V +  +   
Sbjct: 122 SSD----SWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQD 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +Y  +D+    N +E HI  LR+    K+G + + + R  GY
Sbjct: 178 LYS-WDDDPSSNSLEVHIHNLRQ----KIGKNRIKTLRGFGY 214


>gi|228997591|ref|ZP_04157203.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|228762143|gb|EEM11077.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
          Length = 231

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 11/167 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IRA S  P++ IS        +   ++G DD + KP H+  ++A++ +  RR      
Sbjct: 61  RQIRAISTCPILFISAREGTMDQVMALENGGDDYIPKPFHYEVVMAKIRSQLRRAYGDYA 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K+     E   + +F +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 121 PKIEERMIEQQGLTLFPERLVLQLRNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY--SIDW 222
              +  V++N +  + +++RKKL+  LG    +++ R +GY   I W
Sbjct: 181 D-SESYVDDNTLSVNTTRVRKKLQ-ALGIQGAIETIRSVGYRLHITW 225


>gi|253698881|ref|YP_003020070.1| transcriptional regulator [Geobacter sp. M21]
 gi|251773731|gb|ACT16312.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 224

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 14/153 (9%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR ++         IR
Sbjct: 73  TPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSELDRG----AEIR 128

Query: 133 VFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAV 185
            F+D R   V  +V+       L  +E  +LEY M N  + + +T I   ++   FD   
Sbjct: 129 -FADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWDYTFDSFT 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             N+++ +++ LRKK+  +     + + R +GY
Sbjct: 188 --NIIDVYVNYLRKKIDREADKKLIHTVRGVGY 218


>gi|218906286|ref|YP_002454120.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218535301|gb|ACK87699.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 225

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKMTPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-HNVVVNPNVVDLYIGYVRKKLKCEKKNRYIQTIHGRGYSM 223


>gi|157429040|gb|ABB99942.2| hypothetical protein pCT0024 [Listeria monocytogenes]
          Length = 226

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L + R IR  S VP+I ++        L     G DD + KP   +E++AR+  + RR  
Sbjct: 60  LTVCRKIREISNVPIIMLTAKSDEDDILTGLKLGADDYMLKPFSPKELVARIQTVLRRTE 119

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K+S+N  E   + V+ D R   +      L   E  IL  LM+   K  +++ +
Sbjct: 120 TLSNPNKLSSNNKE---LIVYPDSRQVYLHQVELNLTTTEFDILHALMSTPNKVFSRSDL 176

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203
              + G+  + ++ + ++SHI  LR K+ N
Sbjct: 177 IEKVKGIEFDGLDRS-IDSHIKNLRHKIEN 205


>gi|187930279|ref|YP_001900766.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|187727169|gb|ACD28334.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 233

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----E 127
           + P++ ++   +L   +   ++G DD + KP    E+ AR+ A+ RR   S  RA     
Sbjct: 72  RTPVLILTAQGALDERVRGLNAGADDFLTKPFALSELEARLMALIRR---SRGRAFPRLR 128

Query: 128 TGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            GP+  F  GR    + GE   L  RE   L  L+   G+ ++K  +F  ++ L D    
Sbjct: 129 CGPLE-FDTGRKAFLLSGEPLSLTPREHAALSALLHKTGQPISKVHLFDKVFNL-DSDSS 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + VE  + +LRKKL    G   V + R LGY ++  
Sbjct: 187 PDAVEVVVHRLRKKLAGT-GVQIV-TVRGLGYLLEAG 221


>gi|30020982|ref|NP_832613.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229128203|ref|ZP_04257184.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|29896535|gb|AAP09814.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228655062|gb|EEL10919.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
          Length = 215

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 100/214 (46%), Gaps = 28/214 (13%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAH 70
           K+G+  L   DG           EE LQ    E +  AI  +++ K   +  + + I+ +
Sbjct: 22  KEGFEVLLAKDG-----------EEALQIFYDEKIDLAILDWMMPKHSGIT-VCQEIKKN 69

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127
           S V ++ ++     +  L    SG D+ V KP H   ++ R   + +    ++V + +  
Sbjct: 70  SSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRAKKLIQHDDIIQVQDVKIN 129

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
               +V+ +  + E+        + E  +++  + ++G  + + ++   ++G FD   EE
Sbjct: 130 FAKNKVYKNDIELEI-------TKTELELIKCFLNHKGTILTRKKLLDIVWG-FDYFGEE 181

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V++H+ +LRK    K+G D + + R LGYS++
Sbjct: 182 RTVDTHVRRLRK----KIGEDIIKTHRGLGYSLE 211


>gi|148261796|ref|YP_001235923.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326405299|ref|YP_004285381.1| response regulator [Acidiphilium multivorum AIU301]
 gi|146403477|gb|ABQ32004.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325052161|dbj|BAJ82499.1| response regulator [Acidiphilium multivorum AIU301]
          Length = 240

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 4/133 (3%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130
           +VP+I ++   + Q  +   DSG +D V KP    E++AR+ A  R  + S +   + GP
Sbjct: 82  KVPIIMLTGSAAEQDVVRGLDSGANDYVAKPFRLAELMARLRAHLRNFESSEDAVLQIGP 141

Query: 131 --IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
              R          Q     L  +E  IL++L    GK V +  + + ++G ++ AV  +
Sbjct: 142 YTFRPAMKLLHEPSQNRRIRLTDKEAAILKFLYRAGGKSVGRQVLLNEVWG-YNAAVTTH 200

Query: 189 VVESHISKLRKKL 201
            +E+H+ +LR+K+
Sbjct: 201 TLETHVYRLRQKI 213


>gi|83746102|ref|ZP_00943157.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|83727285|gb|EAP74408.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
          Length = 332

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP H  E+ ARV A+ RR   +  +      GP       R   + GE   L 
Sbjct: 181 GADDYIAKPFHIPELRARVEALLRRAYPVPYAGVPFAVGPYHFNPQRRQVTLHGEHLALT 240

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
             E ++   L AN G+ +++  IF  ++G  + A     ++SH+S++R KL      +PV
Sbjct: 241 DIEFQLAMLLFANVGRTLSRDHIFGQVWGR-NSAEYTRTIDSHVSRIRLKLH----VEPV 295

Query: 211 DSKRFL-----GYSID 221
           +  R       GY +D
Sbjct: 296 NEVRLAAVYKHGYRLD 311


>gi|331699407|ref|YP_004335646.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954096|gb|AEA27793.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 226

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 11/143 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           R++R  S VP+I  +        +   D+G DD + KP    ++ AR+ A+ RR     +
Sbjct: 65  RMLRGASAVPVIVATARDDEAEIVAVLDAGADDYLVKPFGSAQLDARIRAVLRRTGEPGT 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK----TQIFSAIY 178
           +     G + V    R   + G    L  RE  +L YL A  G+ V K    TQ++   Y
Sbjct: 125 DPTVTVGGLVVDPRSRIARLDGRELELSPREFDLLHYLAARAGEVVGKRELLTQVWQLPY 184

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G  D+      V+ H+S LR+KL
Sbjct: 185 GGADK-----TVDVHLSWLRRKL 202


>gi|300119508|ref|ZP_07057060.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723098|gb|EFI63988.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 233

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR    N  A
Sbjct: 69  VREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKMNGFA 128

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E G +++        V+GE   L  RE  ILE L  N G   +  QI+  ++ 
Sbjct: 129 IQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNSGMVFSAEQIYEKVWN 188

Query: 180 LFDEAVE-ENVVESHISKLRKKL 201
             + + + +N V  HI K+R+K+
Sbjct: 189 --ERSFQSDNTVMVHIRKVREKI 209


>gi|257454340|ref|ZP_05619603.1| transcriptional regulatory protein RstA [Enhydrobacter aerosaccus
           SK60]
 gi|257448243|gb|EEV23223.1| transcriptional regulatory protein RstA [Enhydrobacter aerosaccus
           SK60]
          Length = 235

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L + R +R H   P++ ++        +   + G DD V KP+  R +LAR+ A+ 
Sbjct: 63  GSDGLTVCREVRPHFHNPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALL 122

Query: 117 RRLKVSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR   +       R E G + + + GR   +  E+      E  +L  L +N G+ +++ 
Sbjct: 123 RRSDTAPTDEVPQRLEFGDLVIDNGGRSVTLNDELVDFTSAEYDLLWLLASNAGRILSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
            IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 183 DIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 221


>gi|228989445|ref|ZP_04149432.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
 gi|228770293|gb|EEM18870.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
          Length = 237

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 13/161 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + +P++ ++        +     G DD + KP    E++AR+ A+ RR  
Sbjct: 63  IEVCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN   +   +  F       +     V G+   L  +E  +L++  +N  +   KTQ
Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   +   ++N V  HI KLRKK+      DP + K
Sbjct: 183 LFRNVWD-SNYIEDDNTVMVHIRKLRKKIE----VDPSNPK 218


>gi|242309459|ref|ZP_04808614.1| phosphate regulon transcriptional regulatory protein phoB
           [Helicobacter pullorum MIT 98-5489]
 gi|239524030|gb|EEQ63896.1| phosphate regulon transcriptional regulatory protein phoB
           [Helicobacter pullorum MIT 98-5489]
          Length = 222

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 9/205 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF-LIGKGEK 59
           ++VL DD ++++    AL   + +  +GF+       LQ + +E++  I    ++  G  
Sbjct: 2   IYVLEDDNSILELILYALKSQN-IEAKGFSE---PLALQEAIKEEIPQILILDVMLPGIS 57

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAAIY 116
             E+ R I+   +   I +    +L + LD     D G DD + KP    E LAR+ A+ 
Sbjct: 58  GFEILREIKNSEKTKGIAVLMLSALNSELDKVKGLDCGADDYITKPFGVMEFLARIRALL 117

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR++   +    G +   S      ++G+   L  +E  IL  L+ N  +  ++ +I   
Sbjct: 118 RRVEAKKDEIIFGELEYSSIKHSVTLRGKKVDLTLKEFEILGLLLKNIQRAFSRDEILEI 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++G    A E   V+ HI  LR+KL
Sbjct: 178 LWGDSYNA-ESRRVDIHIKTLRQKL 201


>gi|210631674|ref|ZP_03296965.1| hypothetical protein COLSTE_00850 [Collinsella stercoris DSM 13279]
 gi|210159962|gb|EEA90933.1| hypothetical protein COLSTE_00850 [Collinsella stercoris DSM 13279]
          Length = 191

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR+ S VP+I IS        +   D+G DD + KP    E+LARV A  RR  ++   A
Sbjct: 72  IRSWSAVPIIVISARIEDSDKIGALDAGADDYLTKPFSVEELLARVRASLRRSGMAGTDA 131

Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                 + GP+ +        V G    L   E ++L  L  N GK +  T I   I+G
Sbjct: 132 VEASTFDNGPLHIDFAAGCASVAGRELQLTPTEYKLLALLAKNVGKVLTHTFITHEIWG 190


>gi|170780989|ref|YP_001709321.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155557|emb|CAQ00673.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 269

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 20/203 (9%)

Query: 18  LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRI------ 66
           L  DD  SL      +L +E W   +A     A+ A    K + V   + LP +      
Sbjct: 46  LVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGLQVL 105

Query: 67  --IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKV 121
             +RA ++ +P++ ++   SL   L    +G DD V KP    E++AR+  + RR  L V
Sbjct: 106 SRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSTLVV 165

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+        G + +  D  +    G+   L   E  +L YLM N  + ++K QI   ++
Sbjct: 166 SDTVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILDRVW 225

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
             +D   + +VVE +IS LR+K+
Sbjct: 226 S-YDFGGKSSVVEIYISYLRRKI 247


>gi|182418144|ref|ZP_02949444.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237666136|ref|ZP_04526123.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377962|gb|EDT75502.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237658226|gb|EEP55779.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 226

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I +  S++ ++ +S    ++  +   D G +D + KP    E+ AR+ ++ RR  + 
Sbjct: 63  LKQIRQKDSEIKILILSARTQIEDRVLGLDEGANDYLVKPFDFLELEARIRSLIRRKFIQ 122

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+    G I + +      + G++  + ++E  IL YL+ N+   V+  ++   I+   
Sbjct: 123 ENSMLSCGSIFIDTSKNLVYINGDLLSVTKKEYAILNYLLYNKNTVVSSEKLIEHIW--- 179

Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D  V+   N ++ H+  LRKK+      + + + R  GY ++
Sbjct: 180 DSEVDLFSNTLKYHMHSLRKKIAEYSEKEIIKTVRGCGYIVE 221


>gi|152998857|ref|YP_001364538.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|151363475|gb|ABS06475.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
          Length = 235

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 14/142 (9%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---------GPIRVFSDGRDPEVQG 144
           G DD + KP+  R +LA++ A  RR +++ + AE          G + + +  R   +  
Sbjct: 95  GADDYLLKPVKPRMLLAKIKAFLRRDRLAESIAENQQVSEYISFGQLAINTQKRSVTLAD 154

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL--- 201
               L   E  +L  L  N G  +++  I   + G + + +E   V++HI +LRKKL   
Sbjct: 155 VAIKLTDGEYDLLITLAKNAGNILSRNDIVEQVKGYYYDGIERG-VDNHICQLRKKLGDD 213

Query: 202 -RNKLGFDPVDSKRFLGYSIDW 222
            RN      + SK +L  S  W
Sbjct: 214 ARNPFKIKTIRSKGYLFVSSGW 235


>gi|156740994|ref|YP_001431123.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232322|gb|ABU57105.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 230

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----RRLK 120
           RI+R  S+VP++ ++        +   + G DD V KP    E+LARV AI     RR+ 
Sbjct: 67  RILRQESEVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRSERRIG 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     + G +RV +  R          L ++E  +L  LM NR   +++  +   ++G 
Sbjct: 127 MMREVLDAGSLRVDTGSRRAWRDNVELNLSQKEFDLLVCLMRNRSMALSRDMLLERVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +D   +   V+ HI  LR+K+
Sbjct: 186 YDFLGDSRTVDVHIRWLREKV 206


>gi|75677094|ref|YP_319515.1| two component transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74421964|gb|ABA06163.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 224

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           +P++ ++    ++  +    SG DD + KP    E++AR+ A+ RR  ++  +      +
Sbjct: 73  LPILVLTARGGVEDRVSGLRSGADDYLVKPFSFDELVARLEALLRRPGQLLGSSLRLANV 132

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
              S+GR   V  +   L  RE  +LE L+  +G  V+K  +   I+GL  + V  N VE
Sbjct: 133 TFDSEGRQAFVDMKPQNLTAREIAVLELLLRRKGNVVSKKLLEDQIFGLTGD-VASNAVE 191

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++ +LRK+L +      + + R +GY
Sbjct: 192 VYVHRLRKQLLDIGAKVKISTIRGVGY 218


>gi|70733521|ref|YP_257160.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68347820|gb|AAY95426.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 242

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 11/149 (7%)

Query: 61  LELPRIIRAHSQVP--LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           L L R  R H   P   I ++   +    +   ++G DD ++KP    E+ ARV A+ RR
Sbjct: 66  LSLLRWTREHMDSPPAAIMLTSRDAESDIVQALNTGADDYLSKPFRPNELKARVNAVLRR 125

Query: 119 LKVSNNRAETGPIRVFSDGR--DPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +  N +E   ++ F+D    D E+     G    L  RE R+   L AN G+ +++  
Sbjct: 126 HGLQRNHSEE--VQSFNDLSFDDAELTVTRAGAPISLTEREYRLARCLFANLGRPLSREY 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           ++   +   +E V    +++HI +LR KL
Sbjct: 184 LYERFWT-HEEIVSSRPLDTHIYRLRNKL 211


>gi|313157188|gb|EFR56618.1| response regulator receiver domain protein [Alistipes sp. HGB5]
          Length = 226

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 40/224 (17%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
            LVK+GY           E F +    E L+++A+     I   L+     V++  +  R
Sbjct: 25  TLVKEGY-----------EVFTAQNGAEALKAAAQHRPHLI---LLDMMMPVMDGAQTCR 70

Query: 69  AHSQVP------LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           A  + P      ++ +S     +  L  F  G DD + KPI  + +++RV AI +R+   
Sbjct: 71  AIREDPQLRDTMVVFLSALGEEEQQLAGFGVGADDYLTKPIKMKLLVSRVQAILKRIDAG 130

Query: 123 NNRA--ETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A  E G         V  DGR+         LPR+E  +L+ L ++ GK  ++ +I+
Sbjct: 131 KAPAPAEEGVAMDRERYTVTRDGRE-------ISLPRKEFALLDLLYSSPGKLFSREEIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + I+G  +  V +  ++ HI    +KLR K+G + + + + +GY
Sbjct: 184 ARIWG-SEVVVGDRTIDVHI----RKLRQKIGDEKIVTVKGVGY 222


>gi|291538269|emb|CBL11380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 95/207 (45%), Gaps = 9/207 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++   + + EE L+ +       +   ++       E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDC--AYDGEEALKMATENAYDMVLLDIMLPKMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   S
Sbjct: 64  VCQHIREFSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAAS 123

Query: 123 NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +       E G +++  + R   + G+   L  +E  +LE L+ N  K   +  + + 
Sbjct: 124 QPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           ++G ++   +   V+ H+ +LR+K+ +
Sbjct: 184 VWG-YEYPGDVRTVDVHVRRLREKIES 209


>gi|237740054|ref|ZP_04570535.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294782859|ref|ZP_06748185.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
 gi|229422071|gb|EEO37118.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294481500|gb|EFG29275.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
          Length = 224

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 4/150 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAET 128
           ++  ++ ++   S++  +   D G DD + KP    E+LAR+ A+ RR K  N  N  E 
Sbjct: 71  NETAVLMLTARDSIEDKIKGLDLGADDYLIKPFDFGELLARIRALVRR-KYGNTSNTMEI 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             + +    +     G+   L  +E  +LEYL+ N+G  +++ +I  +++    E  E N
Sbjct: 130 DDLCIDIAKKTVVRGGKNIELTGKEYEVLEYLIQNKGHVLSRDKIRDSVWDYGYEG-ESN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +++  I  +RKK+        + +KR LGY
Sbjct: 189 IIDVLIKNIRKKIDIGNSKPLIHTKRGLGY 218


>gi|229592126|ref|YP_002874245.1| putative two-component system response regulator protein
           [Pseudomonas fluorescens SBW25]
 gi|229363992|emb|CAY51538.1| putative two-component system, response regulator protein
           [Pseudomonas fluorescens SBW25]
          Length = 241

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 12/168 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  GE  L + R +R      ++ ++        +   D G DD V KP+  R +LAR+
Sbjct: 57  LMLPGEDGLSICRTVRERYDGVILMLTARTDDMDQVLGLDMGADDYVCKPVRPRLLLARI 116

Query: 113 AAIYRRLKV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
            A+ RR +        S  R + GP+ V +  R+  +      L   E  +L  L+AN G
Sbjct: 117 QALLRRSEPAEPTAVGSQRRLQFGPLVVDNALREAWLNNAGIELTSAEFDLLWLLVANAG 176

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           + +++ +IF A+ G+  +  ++  ++  IS++R     K+G DP+  +
Sbjct: 177 RILSREEIFIALRGIGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 219


>gi|229196226|ref|ZP_04322974.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228587080|gb|EEK45150.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 226

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 10/148 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR +S VP+I ++       TL  F+ G DD V KP     +LAR     R  K +
Sbjct: 65  VCRRIRKNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAK---RLFKDT 121

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N + +         IR+    R   + G+       E  IL  LM ++ + +++ Q+ + 
Sbjct: 122 NQQVQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLSREQLITN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           I+G +D   ++  + +H+  +R KL  K
Sbjct: 182 IWG-YDYDGDDKTLTAHMRNVRLKLGEK 208


>gi|194291255|ref|YP_002007162.1| response regulator [Cupriavidus taiwanensis LMG 19424]
 gi|193225090|emb|CAQ71101.1| putative response regulator [Cupriavidus taiwanensis LMG 19424]
          Length = 224

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 6/179 (3%)

Query: 28  GFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHS-QVPLIGISDYPS 83
           GF      + LQ+ AR      +A L+     G+  L + + +R    + P++ ++   +
Sbjct: 24  GFVIEHVADGLQAEARLQAEEYDAVLLDLRLPGKDGLAVLKSMRGRDDRTPVLILTAQDT 83

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEV 142
           L   +   + G DD + KP    E+ AR+ A+ RR +  ++ R + G +    + R   +
Sbjct: 84  LDERVRGLNLGADDYLPKPFAIAELEARLLALIRRSRGRAHPRLQCGTLVFDGETRSFTL 143

Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            G    L  RE  +L  L+A  G+ + K Q+   ++ L D  V  + +E  + +LRKKL
Sbjct: 144 GGAPLALTPRESTLLGALLARSGQPLTKAQLLDKVFSL-DADVSPDAIEVLVYRLRKKL 201


>gi|188585611|ref|YP_001917156.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350298|gb|ACB84568.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 246

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 24/183 (13%)

Query: 61  LELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---- 114
           LE+ R IR +S   +P+I ++        +   + G DD V KP   RE+LARV A    
Sbjct: 61  LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120

Query: 115 ----------------IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
                           I+ +   S +  + GP+ +  +     ++ +   L  +E  +L 
Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLG 217
            ++ N G+ + + ++   I+G +D   +   V+ HI  LR+K+    G  D V++ R +G
Sbjct: 181 IMVTNSGQVLTREKLLEKIWG-YDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIG 239

Query: 218 YSI 220
           Y +
Sbjct: 240 YRL 242


>gi|161506505|ref|YP_001573626.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|160346743|gb|ABX19826.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
          Length = 228

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 15/216 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  + +DG++  G +  E EE+       D+  ++  L   G+    L + +
Sbjct: 19  KGLTEAGYVVDWVEDGIT--GQHQAETEEY-------DLLVLDVML--PGQDGWTLLQNL 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           R     P++ ++    +   +   + G DD + KP    E+ AR+ +I RR +   +N  
Sbjct: 68  RRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQPRDSNTL 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
               + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ + F+   
Sbjct: 128 RAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDMNFNS-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 186 DTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 221


>gi|149917429|ref|ZP_01905927.1| DNA-binding response regulator KdpE [Plesiocystis pacifica SIR-1]
 gi|149821766|gb|EDM81162.1| DNA-binding response regulator KdpE [Plesiocystis pacifica SIR-1]
          Length = 235

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 6/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           LEL   +RA + +P+I +S   S    +   D G DD + KP    E+LARV    R   
Sbjct: 66  LELLVELRAWTSMPIIVVSARGSELDKVRALDLGADDYLTKPFGSHELLARVRVALRQAA 125

Query: 118 RLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R+   + +   E G + V    R  E+ G+   L   E ++L  ++A+ GK +   Q+ S
Sbjct: 126 RVGAGSEQPLFEVGELSVDLARRKVELGGQAVRLTPTEYKLLSTMIAHAGKVLTHRQLLS 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
            ++G   +A     +  ++++LR+KL
Sbjct: 186 EVWG-PAQASNTQYLRVYMAQLRRKL 210


>gi|54302379|ref|YP_132372.1| putative transcriptional regulator CpxR [Photobacterium profundum
           SS9]
 gi|46915801|emb|CAG22572.1| putative transcriptional regulator CpxR [Photobacterium profundum
           SS9]
          Length = 222

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 7/160 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R I      P++ ++      + LD   +G D  V KP    E+LAR+ +I RR+ 
Sbjct: 61  LQVARRICQRFATPILMLTALGDEASMLDGLQAGADQYVAKPFRVPELLARITSILRRVG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +   R             D  +Q    PL   E  +LEYL+ + G  V+K ++   +   
Sbjct: 121 LERQRQGLNNCTA-----DLSIQFSRLPLTGTESELLEYLIKHDGIVVSKAELQKEVLK- 174

Query: 181 FDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYS 219
            D    +  ++ HIS +R+K L++ L    + + R  GYS
Sbjct: 175 KDLCPFDRNLDMHISNIRRKMLQSGLSKQHIKTVRGKGYS 214


>gi|120553936|ref|YP_958287.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120323785|gb|ABM18100.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 233

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L+  G   L + R IRA +  VP++ ++   +    +   + G DD + KP    E+ AR
Sbjct: 54  LMLPGLDGLAVCREIRASAGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSAR 113

Query: 112 VAAIYRRLKVSNNR--AETGPIRVFSDG-RDPEVQGEVF------PLPRRERRILEYLMA 162
           + A++RR+   + +  AE     + +DG R   V+  VF       L  RE  +L +  +
Sbjct: 114 IKALFRRVDALSRKSSAEDDVAEIEADGLRIDPVRRRVFLECRELDLTAREFDLLWHFAS 173

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           +RG+  ++ Q+  A++G ++    E+ V +HI+    +LRNK+  DP + +
Sbjct: 174 HRGRVFSRAQLLDAVWG-YNHDGYEHTVNTHIN----RLRNKIEPDPAEPR 219


>gi|46201500|ref|ZP_00208129.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 223

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 6/132 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F++G DD V KP    E++ R+ A+ RR    +      GP+ + + G      G    L
Sbjct: 91  FNAGADDYVTKPFEMEEVVTRIRALIRRAAGHAAPEITCGPLAIDTMGGRVSRAGLPIAL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
             +E RIL YL  ++ + ++++++   +Y   D   + NV++  ++++R+    KLG D 
Sbjct: 151 TAQEFRILSYLAHHQSRVISRSELVEHVYD-RDADPDSNVLDVLVARIRR----KLGVDV 205

Query: 210 VDSKRFLGYSID 221
           + + R  G+ ++
Sbjct: 206 IHTLRGQGWRME 217


>gi|328461774|gb|EGF34010.1| response regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 17/175 (9%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR+
Sbjct: 62  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 121

Query: 120 KV-------SNNRAE----TGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKR 167
            +        NN  E    T  +++  D R+     + V  L  +E  +L Y MA + K+
Sbjct: 122 MMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLL-YTMAQKPKQ 180

Query: 168 V-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           V ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 181 VFSRDQLLDLVWG-YEYYGEERTVDAHIKKLRQKL-EKVGAKVIQTVWGVGYKFD 233


>gi|315638413|ref|ZP_07893591.1| phosphate regulon response regulator [Campylobacter upsaliensis
           JV21]
 gi|315481541|gb|EFU72167.1| phosphate regulon response regulator [Campylobacter upsaliensis
           JV21]
          Length = 229

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 14/167 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + ++A++    I +    +L   +D     D G DD + KP    E +AR+ AI RR
Sbjct: 65  EILKELKANANTKNISVLMLTALNHEIDKVKGLDLGADDYITKPFSVMEFIARIRAILRR 124

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                N AE      + +    R+ +V G V  L  +E  +L +L+ N+ +  ++  +  
Sbjct: 125 TSQEQN-AENIVLDELELSYKTREVKVCGAVIVLTLKEFELLGFLLKNQNRVFSRDDLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            ++G +  + E   ++ HI    K LR KLG     + + R +GY I
Sbjct: 184 ILWG-YSYSGESRTIDIHI----KTLRQKLGIASRFIKTIRGVGYKI 225


>gi|309811868|ref|ZP_07705641.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
 gi|308434157|gb|EFP58016.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
          Length = 237

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 15/174 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +E+ R +R  S   ++ ++        L     G DD + KP   RE++AR+  + 
Sbjct: 65  GMDGVEVCRQLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLL 124

Query: 117 RRLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR +             G + V    R  E+      L R E  +L+ L  + G+ + + 
Sbjct: 125 RRPRAGGAGTTASVLRIGALTVDQSSRRVELDASPVELTRTEFDLLQALAEHPGRVLNRR 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220
           Q+  A++G  D   ++++V+ HI+ LRK    KLG DP     V + R +GY +
Sbjct: 185 QLTDAVWG-EDWVGDDHLVDVHIAHLRK----KLGDDPSQPRFVQTVRGVGYRM 233


>gi|303236668|ref|ZP_07323249.1| putative Response regulator SaeR [Prevotella disiens FB035-09AN]
 gi|302483172|gb|EFL46186.1| putative Response regulator SaeR [Prevotella disiens FB035-09AN]
          Length = 232

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 8/137 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-------VSNN 124
            +P+I ++   +   T+  F+ G DD ++KP   RE++ R+ A+  R K           
Sbjct: 78  HIPIIFLTAKDTENDTITGFNLGADDYISKPFSLREVMLRIRAVLNRTKNVAQPTVTEEE 137

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E   + +  D +   + GE   L + E  +L+ LM ++G+  ++ ++   I+   D  
Sbjct: 138 TLEFEGLEINLDKKIVRIDGEEIGLTKTEFELLQLLMEHKGRVYSRQELLDRIWPK-DVL 196

Query: 185 VEENVVESHISKLRKKL 201
           V    V+ ++++LRKKL
Sbjct: 197 VLNRTVDVYVTRLRKKL 213


>gi|299532922|ref|ZP_07046309.1| two component heavy metal response [Comamonas testosteroni S44]
 gi|298719146|gb|EFI60116.1| two component heavy metal response [Comamonas testosteroni S44]
          Length = 229

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R   Q P++ ++    ++  +    +G DD + KP    E++AR+ A+ RR   +    
Sbjct: 66  LRQSRQTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGLQAQATP 125

Query: 127 ETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           E   +R+     D         G+   L  +E  +L  L+  +G+ +++T++ S ++ + 
Sbjct: 126 EATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQVWDMN 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   E NVVE  + +LR KL        + + R +GY ++
Sbjct: 186 FDS--ETNVVEVAVRRLRLKLDAPFELPLLHTVRGMGYVLE 224


>gi|298244705|ref|ZP_06968511.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297552186|gb|EFH86051.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 235

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 16/171 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           LE+ R IR  S VP+I +S     +  +   D G DD + KP   RE++AR+    R   
Sbjct: 65  LEVCRRIREESNVPIIVLSVKDQERDKVQALDLGADDYIAKPFGMREVIARIQVALRHLA 124

Query: 118 RLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R++V    R E G +RV    R   V      L   E  +L+  + +RGK + +  +   
Sbjct: 125 RIQVGTAPRLEIGLLRVDFAQRRVWVGETEIKLTPTEYDLLKVFLTHRGKLLTRDMLQEQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221
           ++G   +  + + +  H+++LR+K+      DP D  RF+      GY  D
Sbjct: 185 LWGAQSKG-KLHSLHVHVAQLRQKIEP----DP-DHPRFILTTPGVGYRFD 229


>gi|291165916|gb|EFE27963.1| DNA-binding response regulator YycF [Filifactor alocis ATCC 35896]
          Length = 230

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 21/217 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L ++GY  +   DG  L+G+         Q   +E+V  I   ++       ++ R IR 
Sbjct: 22  LKREGYDIITAFDG--LDGY---------QKGIQENVDLILLDIMLPSMNGFDVCRHIRE 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAET 128
            S VP+I ++        +   + G DD + KP   RE++ARV A  RR  + +NN AE+
Sbjct: 71  KSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSLRELIARVKANIRRTSMPNNNSAES 130

Query: 129 GPIR----VFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
             I+    V    +    + + V  L  RE  +L++L     +  ++ Q+   ++G ++ 
Sbjct: 131 DLIQHKNLVIDTSKYSVTKNDTVLELTVREYELLKFLAVQPNQVFSREQLLKQVWG-YEY 189

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
             +   V+  I +LR+KL +    +P  + +KR +GY
Sbjct: 190 YGDIRTVDVTIRRLREKLEDDAS-NPTYILTKRGVGY 225


>gi|229105491|ref|ZP_04236132.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228677916|gb|EEL32152.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 232

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKYHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ +++  E G + +  + R   V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|227498000|ref|ZP_03928176.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226832590|gb|EEH64973.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 227

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 3/143 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R+IRA S VP+I ++     Q  +   ++G DD V KP   +E+LARV    RR  
Sbjct: 62  VEICRLIRAESDVPVIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVRTRLRRGT 121

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +   G      G    L   E  +L  L     K   + ++ + ++
Sbjct: 122 EAGAVEHVRVGDVDIDVLGHRVTRDGAALALTPLEFDLLLTLARTPSKAFTREELLARVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G    A +  +V  H+ +LR K+
Sbjct: 182 G-HQHAADTRLVNVHVQRLRSKV 203


>gi|207741893|ref|YP_002258285.1| transcription regulator protein [Ralstonia solanacearum IPO1609]
 gi|206593279|emb|CAQ60206.1| probable transcription regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 275

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 24/167 (14%)

Query: 69  AHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------- 118
           AH++ +P+I +S +   +T +   D+G DD V KP    E+ AR+ A+ RR         
Sbjct: 72  AHTRGLPVIVLSRHGDARTKIAALDAGADDYVVKPCDAGELHARIRAVLRRRAQQQGDEI 131

Query: 119 LKVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           L+++  R +   + V +   +G  P       PL   E R+L +L+A+  +  ++TQ+  
Sbjct: 132 LQINGLRLDPLTLGVTAQTDEGVRP------IPLSPLEFRLLHFLVAHPQRVHSRTQLLD 185

Query: 176 AIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  +F   V E  V+ H+ KLR  L   L    + + R  GY +
Sbjct: 186 RVWGNHVF---VGERTVDVHVRKLRVALEGTLCDGLIQTVRGGGYRL 229


>gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 222

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 13/214 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L ++GY      DG         E E + + S+ + +  I   ++ K + +     I 
Sbjct: 18  RGLTEEGYCIDVVYDGE--------EAENYAKYSSYDLI--ILDIMLPKKDGITVCQNIR 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           + +   P++ ++   S+   +   DSG DD + KP    E+ ARV ++ RR   + N   
Sbjct: 68  KENINTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRRESFTRNPVL 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + G + + +  R+  +  +   L  +E  ILEY M N    V +T +   ++ +  E   
Sbjct: 128 KVGDLTLNTLTREVWMGEKKLKLTPKEYNILEYFMRNPKIVVTRTILEEKMWDIDFEG-N 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            NV++ +I +LRKK+ +K G   +++ R  GY +
Sbjct: 187 SNVIDVYIRRLRKKIGDKEG-KILETVRGAGYRL 219


>gi|86607748|ref|YP_476510.1| DNA-binding response regulator RpaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556290|gb|ABD01247.1| DNA-binding response regulator RpaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 250

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAE 127
           S++P++ ++     Q  ++ F++G DD + KP   +E+L RV A+ R   R+  +    E
Sbjct: 74  SEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRRSDRIPQAAKHGE 133

Query: 128 T---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               GP+ +  +  +    G+   L   E  +L  LM   G+ V+ ++I   ++G ++  
Sbjct: 134 ILTYGPLTLVPERFEALWFGKTIKLTHLEFDLLHCLMQRHGQTVSPSEILQEVWG-YEPD 192

Query: 185 VEENVVESHISKLRKKL 201
            +   +  HI  LR KL
Sbjct: 193 DDIETIRVHIRHLRTKL 209


>gi|163938276|ref|YP_001643160.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860473|gb|ABY41532.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 237

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  IEVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN   +      F     D +   V   G+   L  +E  +L++  +N  +   KTQ
Sbjct: 123 VLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           +F  ++   D   E +N V  HI KLRKK+
Sbjct: 183 LFRNVWD--DNYTEDDNTVMVHIRKLRKKI 210


>gi|229009025|ref|ZP_04166364.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228752195|gb|EEM01884.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
          Length = 235

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 11/167 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R IRA S  P++ IS        +   ++G DD + KP H+  ++A++ +  RR      
Sbjct: 65  RQIRAISTCPILFISAREGTMDQVMALENGGDDYIPKPFHYEVVMAKIRSQLRRAYGDYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K+     E   + +F +    +++ +   + R E  +LE LM N  + V++  + + ++
Sbjct: 125 PKIEERMIEQQGLTLFPERLVLQLRNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY--SIDW 222
              +  V++N +  + +++RKKL+  LG    +++ R +GY   I W
Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLQ-ALGIQGAIETIRSVGYRLHITW 229


>gi|229060536|ref|ZP_04197897.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228718780|gb|EEL70404.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 224

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 103/214 (48%), Gaps = 28/214 (13%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAH 70
           K+G+  L   DG           EE LQ    E +  AI  +++ K   +  + + I+ +
Sbjct: 31  KEGFEVLLAKDG-----------EEALQIFYDEKIDLAILDWMMPKSSGIT-VCQEIKKN 78

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127
           S V ++ ++     +  L    SG D+ V KP H   ++ R   + +    ++V + + +
Sbjct: 79  SSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRAKKLVQHEDVIQVQDLKID 138

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
               +V+ + ++ ++        + E ++++  + ++G  + + ++   ++G FD   EE
Sbjct: 139 FTKNKVYKNEKELDI-------TKTELQLIKCFLNHKGTILTRKKLLDIVWG-FDYFGEE 190

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V++H+ +LRK    K+G + + + R LGYS++
Sbjct: 191 RTVDTHVRRLRK----KIGENIIKTHRGLGYSLE 220


>gi|227524257|ref|ZP_03954306.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088488|gb|EEI23800.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 245

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 107/228 (46%), Gaps = 30/228 (13%)

Query: 12  KDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           K+G+   F  DG+ +++ FN  + E W       D+  ++  L  K    +E+ + IRA 
Sbjct: 22  KEGWDVSFAYDGIEAVDMFNE-DPESW-------DMITLDLNLPKKDG--MEVAKEIRAK 71

Query: 71  SQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN----- 124
           S+ VP+I ++   S    +  F+ G DD V KP     ++AR+ A+ RR           
Sbjct: 72  SKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRRAHTEAQVEEPE 131

Query: 125 ----------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQI 173
                     +  T   ++ ++ R+  + G++ P L  +E  +L  L     +  ++ Q+
Sbjct: 132 HSEEEQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQKPRQVFSREQL 191

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G ++   +E  V++HI KLR+K+  ++G   + +   +GY  D
Sbjct: 192 LELVWG-YEYYGDERTVDAHIKKLRQKI-ERVGPQVIQTVWGVGYKFD 237


>gi|255100919|ref|ZP_05329896.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306809|ref|ZP_05350980.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 232

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 19/163 (11%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + IR +  QV +I ++        ++ F SG DD + KP   +E+L RV+A+ RR+
Sbjct: 63  IEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRV 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V ++   + P  +  D R     G+   L   E  I++YL++N  + +++ QI 
Sbjct: 123 AKDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQIL 182

Query: 175 SAIYG---LFD-EAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             ++G   L+D + V+ N+         +++RNK+  DP   K
Sbjct: 183 DEVWGTNYLYDFKIVDVNI---------RRIRNKIEDDPSKPK 216


>gi|160945777|ref|ZP_02093003.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443508|gb|EDP20513.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii
           M21/2]
          Length = 231

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 14/142 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S++P++ ++     +     F++G DD + KP   +E+L RV AI +R+     R 
Sbjct: 70  LRKTSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILKRVYPEKER- 128

Query: 127 ETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +VF +    +++       GE   L  +E ++ E L  N+G+ V    +  AI G
Sbjct: 129 -----KVFFEAATVDLEKAIVQRSGENISLTAKEFQLFEKLYENQGRIVTTGALCQAICG 183

Query: 180 LFDEAVEENVVESHISKLRKKL 201
            F +   E+ + +HI  LR+K+
Sbjct: 184 DFWQGY-ESTLATHIRHLREKI 204


>gi|89896867|ref|YP_520354.1| hypothetical protein DSY4121 [Desulfitobacterium hafniense Y51]
 gi|89336315|dbj|BAE85910.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 238

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ + IR + +   +P+I +S    +   +   + G DD V KP   RE+LAR+ A  R
Sbjct: 65  LEVCKKIRGNQETASLPIIMLSARDEVADRVIGLELGADDYVTKPFSPRELLARIKARLR 124

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             K ++    T    G + ++ +     V+GE   L  +E  +L   M    +  ++  +
Sbjct: 125 EEKRNSTPLPTSLTWGDLEIWPESYMVTVKGEYVTLTGKEFDLLHIFMKRPNQVFSREYL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
              ++G +  + +   V+ HIS LR KL++     P ++S R +GY +  N
Sbjct: 185 LQKVWG-YTISGDTRTVDVHISNLRSKLKS---ISPIIESVRGVGYRLAVN 231


>gi|257880368|ref|ZP_05660021.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257882229|ref|ZP_05661882.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257885424|ref|ZP_05665077.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257888221|ref|ZP_05667874.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257891026|ref|ZP_05670679.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894279|ref|ZP_05673932.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257896891|ref|ZP_05676544.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260562331|ref|ZP_05832845.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208378|ref|ZP_05923028.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566829|ref|ZP_06447239.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|314939997|ref|ZP_07847192.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943532|ref|ZP_07850297.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948950|ref|ZP_07852317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314950769|ref|ZP_07853845.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314994105|ref|ZP_07859422.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314998036|ref|ZP_07862928.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|257814596|gb|EEV43354.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257817887|gb|EEV45215.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257821280|gb|EEV48410.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257824275|gb|EEV51207.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257827386|gb|EEV54012.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830658|gb|EEV57265.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257833456|gb|EEV59877.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260073255|gb|EEW61596.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260077439|gb|EEW65158.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161360|gb|EFD09250.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|313587966|gb|EFR66811.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313591472|gb|EFR70317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313597049|gb|EFR75894.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597770|gb|EFR76615.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313640767|gb|EFS05347.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644649|gb|EFS09229.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 244

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 21/220 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L K+GY      DG           EE L+  A  +   I   L+      LE+ R +R 
Sbjct: 31  LAKEGYDVYTAYDG-----------EEALEKVAEVEPDLILLDLMLPKMDGLEVAREVRK 79

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127
              +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +    E  
Sbjct: 80  TYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATAAKEPEEA 139

Query: 128 ------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +      +GE   L  RE  +L YL  + G+ + +  +   ++G +
Sbjct: 140 APAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLLQTVWG-Y 198

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           D   +   V+  + +LR+K+  N    + + ++R +GY +
Sbjct: 199 DYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 238


>gi|261345981|ref|ZP_05973625.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM
           4541]
 gi|282565866|gb|EFB71401.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM
           4541]
          Length = 233

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+  G   + + R +R  S VP+I ++        L   + G DD V KP   RE++ARV
Sbjct: 60  LMLPGMDGISVCRELRKFSDVPVIMVTAKTEEIDRLLGLEIGADDYVCKPFSPREVVARV 119

Query: 113 AAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVA 169
             I RR + ++  + E    ++  D    +V+   ++  L   E R+L++L  N G   +
Sbjct: 120 KTILRRCQNTHTHSLEQQQKQLVIDENAFQVRYGDKLLELTPAEFRLLKFLSDNAGTVFS 179

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + Q+   +Y      V +  ++SH+  LR+KL
Sbjct: 180 RDQLLDILYD-DHRIVTDRTIDSHVKNLRRKL 210


>gi|74316234|ref|YP_313974.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055729|gb|AAZ96169.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 230

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 57  GEKVLELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++L R +R    +  VP+I ++     +  +   D+G DD + KP   RE+++R+ 
Sbjct: 58  GMSGIDLCRRLRGDARYQPVPIIMLTARGEERDKVLGLDTGADDYITKPFSPRELVSRIK 117

Query: 114 AIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR   +++    E   +R+       + +G    L   E R+L + M +  +   + 
Sbjct: 118 AVLRRRAPQMTEEAVEVAGLRLDPVSHRVQGKGIALELGPTEFRLLHFFMTHPERVYTRP 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           Q+   ++G  D  VEE  V+ HI +LR  L        V + R  GY
Sbjct: 178 QLLDQVWG-DDVFVEERTVDVHIRRLRLALEPSGHAALVQTVRGSGY 223


>gi|163939018|ref|YP_001643902.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861215|gb|ABY42274.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 233

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 22/230 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +LIDD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 7   LLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  I+R  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR   
Sbjct: 65  DICPILRQKTDCPIFFLTAKTSDVDKVSGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N + +   I  FS GR        +  V G V     +  ++L +   N     +K ++
Sbjct: 125 QNIQEQR--IYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           +  ++G      ++N V  HI KLR+K+      DP     + + R LGY
Sbjct: 183 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQ----DPSKPEYIKTVRGLGY 228


>gi|67921796|ref|ZP_00515313.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67856388|gb|EAM51630.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 223

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 8/205 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A + +    +   +G +++  +  +    L      D+  ++  L GK    L
Sbjct: 3   ILLVDDEAELTEPLYHVLSHEGYNVDVADDGQKGYQLALQNTYDLLILDWMLPGK--PGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+  +  P++ ++   +L   +   D+G DD + KP   RE++ARV A+ RR  
Sbjct: 61  SICRELRSRGKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRRSP 120

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V+ N  + G + +  D +    Q  +  L  +E ++L Y M +  + +   QI+  
Sbjct: 121 ALENVATNPLKIGDLELEPDNQVAYRQSRIINLSDKEVKLLTYFMEHPQQLLTHEQIYQF 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++    E    NV+ + I  LR+K+
Sbjct: 181 LWE-DSEKPSSNVLAALIRLLRRKI 204


>gi|302337571|ref|YP_003802777.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634756|gb|ADK80183.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 236

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L +++R+   QVP+I +S        L  F+SG DD ++KP   RE+LARV A+ RR 
Sbjct: 64  LTLCKLLRSEGMQVPIIFLSSRDDEIDRLLGFESGGDDYLSKPFSVRELLARVRAVLRRS 123

Query: 120 KVSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +       + G +++              PL   E RIL  L+   G   ++ Q+ 
Sbjct: 124 STVADGELPSTVDVGDLQIDVSSARCFFGDHSVPLTLTELRILLSLLELPGGIKSREQLM 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           +A +   D    E  V+SHI ++RKK+    L +DP+++   +GY
Sbjct: 184 AAAFPE-DLYANERAVDSHIKRIRKKMTALGLPYDPLETVYGMGY 227


>gi|294627710|ref|ZP_06706292.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664634|ref|ZP_06729971.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292598062|gb|EFF42217.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605594|gb|EFF48908.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 238

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 19/167 (11%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I ++        +   D+G +D V KP   +E++AR+ ++ R+    +   
Sbjct: 76  IRQWSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQAGAGSTVE 135

Query: 127 ETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           E+    VF DG        R+  + GE  PL R+E  +L  L+ + G+ V + Q+   ++
Sbjct: 136 ES----VFDDGRLHIHLGLREVTLNGEPVPLSRKEYALLALLLKHAGRVVTQPQLLREVW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYS 219
           G   E  + + +   + KLR+KL +          +P    RF+G +
Sbjct: 192 GPTHEE-DTHYLRILVGKLRQKLHDDAADPHYIVTEPGVGLRFIGVT 237


>gi|269794263|ref|YP_003313718.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096448|gb|ACZ20884.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 223

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 21/212 (9%)

Query: 1   MFVLIDDRALVK--------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           M V+ DD AL +        +G+  +F  DG +  G         +  S   D+  ++  
Sbjct: 1   MLVVDDDTALAEMIGLVLKTEGFDPVFCADGDAAIG---------IFRSTSPDLVLLDVM 51

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L GK     E+ R IRA S VP+I ++        +   +SG DD ++KP   +E++AR+
Sbjct: 52  LPGKDGT--EVCRQIRAESGVPVIMLTAKSDTVDVVQGLESGADDYISKPFKPKELVARI 109

Query: 113 AAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A  RR  + +  R   G + +   G      G    L   E  +L  L     +  ++ 
Sbjct: 110 RARLRRTDEPAPERLSIGDLEIDVTGHRVTRAGAAISLTPLEFDLLVALARKPWQVFSRE 169

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   ++G +  A +  +V  H+ +LR K+ +
Sbjct: 170 VLLEKVWG-YRHAADTRLVNVHVQRLRSKIEH 200


>gi|322417814|ref|YP_004197037.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124201|gb|ADW11761.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 224

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 14/153 (9%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR ++         IR
Sbjct: 73  TPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSELDRG----AEIR 128

Query: 133 VFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAV 185
            F+D R   V  +V+       L  +E  +LEY M N  + + +T I   ++   FD   
Sbjct: 129 -FADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWDYTFDSFT 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             N+++ +++ LRKK+  +     + + R +GY
Sbjct: 188 --NIIDVYVNYLRKKIDREADKKLIHTVRGVGY 218


>gi|239933710|ref|ZP_04690663.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 198

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 13/170 (7%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           R DV  ++  L   G   L++ R IR   QVP+I ++        +   ++G DD V KP
Sbjct: 15  RPDVVVLDLML--PGMSGLDVCRRIRDRDQVPIIMVTARGDDVDVVVGLETGADDYVVKP 72

Query: 103 IHHREILARVAAIYRRLKVS-----NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156
           +  R + AR+ A+ RR   S       RAET G + V   G     +GE   L   E R+
Sbjct: 73  VQARVLDARIRAVLRRQDASLPDGTRPRAETHGELVVDRAGLVVTHRGEPVALAPSELRL 132

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           L  L A+ G+  ++ Q+  A++   + +   ++    +    K+LRNKLG
Sbjct: 133 LLTLSASPGQVFSRQQLLEAVW---EHSYHGDI--RLVDACVKRLRNKLG 177


>gi|227529808|ref|ZP_03959857.1| two component response regulator [Lactobacillus vaginalis ATCC
           49540]
 gi|227350292|gb|EEJ40583.1| two component response regulator [Lactobacillus vaginalis ATCC
           49540]
          Length = 225

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149
            DSG DD + KP   +E+LAR+ ++ RR K   +   E   + + SD +  E    +  L
Sbjct: 95  LDSGADDYLTKPFSLKELLARLRSLERRAKDYGDGDLEFADLHLDSDEQVLESSNSI-SL 153

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            R E ++L Y + N GK++    + + ++   DEA  E+V   +I  LR+K ++
Sbjct: 154 SREETQMLGYFILNAGKKLTADDLLNHVWSADDEADAEDVW-INICYLRQKFQS 206


>gi|256379954|ref|YP_003103614.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924257|gb|ACU39768.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  + VP+I +S        ++  D+G DD V KP    E+LAR+ A  RR     +  
Sbjct: 67  LRGWTTVPIIVLSARADSTDKVEALDAGADDYVTKPFGMDELLARLRAAVRRSAAPADAG 126

Query: 127 E----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           E    TG   V    +    +     L   E  +LE L+ N GK VA+ Q+   ++G   
Sbjct: 127 EAVVRTGAFTVDLVAKKVHREDAEVHLTPTEWGLLEVLVRNPGKLVAQRQLLQEVWGPA- 185

Query: 183 EAVEENVVESHISKLRKKL 201
            A E + +  ++++LR+KL
Sbjct: 186 YAKETHYLRVYLAQLRRKL 204


>gi|154496872|ref|ZP_02035568.1| hypothetical protein BACCAP_01165 [Bacteroides capillosus ATCC
           29799]
 gi|150273830|gb|EDN00943.1| hypothetical protein BACCAP_01165 [Bacteroides capillosus ATCC
           29799]
          Length = 263

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 2/150 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
            P + ++    +   ++  D+G DD ++KP    E+LARV A+ RR      +    G +
Sbjct: 112 TPALFLTAKTEVDQRVEGLDAGADDYLSKPFSTSELLARVRAMLRRKDNYVPDLLRAGEL 171

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +     +    G+   L  RE +I+E L+      +      S ++G +D  V+ +VV 
Sbjct: 172 VLNRSTYELSCNGQTQALSGREFQIMEMLLQRPNFIITTDAFMSHVWG-WDSEVDVSVVW 230

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            HIS LRKKL        +   R  GY+++
Sbjct: 231 VHISNLRKKLAALKAPATIRFVRNAGYTLE 260


>gi|21232126|ref|NP_638043.1| DNA-binding response regulator CreB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21113875|gb|AAM41967.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 231

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 7/166 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S+VP+I ++        +   + G DD + KP   RE++ARV A  RR  V
Sbjct: 66  EVCRTLRGFSEVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRSV 125

Query: 122 SNNRAETG--PIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +AE G  P   F+   DG        + PL R E  +L  L+   G  ++++Q+   
Sbjct: 126 AVAQAEPGWQPHGAFAIDRDGSRIRYGETLLPLTRYEYALLAALLQRPGAILSRSQLMDR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            +    ++ +   V++HI  LR KLR   +  DP+ + R LGY+++
Sbjct: 186 GWDASADSADRT-VDTHIKTLRAKLRQAGVPADPIRTHRGLGYALE 230


>gi|116512236|ref|YP_809452.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|125623899|ref|YP_001032382.1| two-component system regulator llrB [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|12483701|gb|AAG53726.1|AF176556_2 LlrrB [Lactococcus lactis subsp. cremoris MG1363]
 gi|116107890|gb|ABJ73030.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
 gi|124492707|emb|CAL97661.1| two-component system regulator llrB [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070671|gb|ADJ60071.1| two-component system regulator llrB [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 236

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 21/179 (11%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + +R      P++ ++     +  L    +G D+ ++K    +EI+ R   + RR 
Sbjct: 61  IEVTKKLRKEGNFTPILILTARDDDEMKLTGLSAGSDEYLDKTTPMKEIIVRAEGLIRRN 120

Query: 120 KVSNNRA--------ETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANR 164
           ++ N  A        +  P  + +D        ++     +V  L +RE  ILE L   +
Sbjct: 121 QMYNQTASDSVSESLDESPATLVTDRLVIDFTKKEVTFDAKVLDLTKREFEILELLAKRQ 180

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G+ +++ ++    +G+ D A E   ++  ISK+RKKL N      + +KR  GY  + N
Sbjct: 181 GEIISREELLQHFWGISDTA-ETRTIDVLISKIRKKLNNHY----IKTKRGFGYYFEEN 234


>gi|314950224|ref|ZP_07853508.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|313643451|gb|EFS08031.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 239

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPIRVFSDGRDPEVQGEVFPL 149
           F  G DD + KPI   E++ RV A+ RR K++ + +   G  ++  D            L
Sbjct: 109 FKLGADDYMTKPIDVNEMILRVEALLRRSKINYSSSLIIGQTKLELDAYTVLQDQHSLIL 168

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P++E  +L  L++   K   + Q+   I+GL D   EE  ++ HI +LR +      F  
Sbjct: 169 PQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL-DTNTEERTIDVHIKRLRTRFEKTEDFQI 227

Query: 210 VDSKRFLGY 218
           + + R LGY
Sbjct: 228 I-TVRGLGY 235


>gi|310828574|ref|YP_003960931.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740308|gb|ADO37968.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 232

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 32/216 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF--------L 53
            ++IDD     D  +    +  V+ +GF     E    S  RE +  +E          +
Sbjct: 5   IIIIDD-----DPKLCALLEKCVTCDGF-----EAACASDGREGLEKLEEGSPVLVVLDV 54

Query: 54  IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           +  G    E+ R IR  S VP++ ++        +     G DD + KP    E  ARV 
Sbjct: 55  MMPGLDGFEVLRKIRETSAVPVLMLTARDDNIDKVYGLRLGADDYLTKPFDINEFSARVH 114

Query: 114 AIYRRLKVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           ++ RR  + N   E          + +  D R   V G    L  +E  IL YL  N+G+
Sbjct: 115 SLVRRYTILNGSGEEILGRLSFKNLEIDPDRRLVTVCGRGIELQAKEFDILYYLAKNKGR 174

Query: 167 RVAKTQIFSAIYG---LFDEAVEENVVESHISKLRK 199
            + K QI+  ++    L+D++   N++ +HISK+R+
Sbjct: 175 ALTKKQIYEEVWQEEYLYDDS---NIM-AHISKIRR 206


>gi|317127345|ref|YP_004093627.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472293|gb|ADU28896.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 225

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 9/141 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP+I IS   +    +     G DD ++KP     ++A++ A  RR   S +  
Sbjct: 67  IRELSTVPIIFISSRDTDADKIRAISQGGDDYIDKPFSIDLLIAKIQATLRR-TYSYSDQ 125

Query: 127 ETGPIR----VFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +   ++    VF   +     G+    L + E RIL  L+ NRG  V++T++  A++   
Sbjct: 126 QLNVLQYDNLVFHIEKQVVFCGDSEILLTKNESRILAVLIRNRGNVVSRTRLMKALWD-- 183

Query: 182 DEA-VEENVVESHISKLRKKL 201
           DE+ V+EN +  ++++LRKKL
Sbjct: 184 DESFVDENTLTVNVNRLRKKL 204


>gi|285018543|ref|YP_003376254.1| two-component system regulatory protein [Xanthomonas albilineans
           GPE PC73]
 gi|283473761|emb|CBA16264.1| probable two-component system regulatory protein [Xanthomonas
           albilineans]
          Length = 234

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 8/162 (4%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+     ++P++ ++   +++  +   D G DD + KP    E LAR  A+ RR   S
Sbjct: 63  LQRLRERRDEIPVLVVTARDAVEDRIHALDQGADDYLIKPFELSEFLARTRALLRR-SSS 121

Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               E   G +R+   GR   +Q +   L  RE  +LE L+   G+ V++ Q+  A+   
Sbjct: 122 GGVPELVLGQLRINLAGRRVWLQDQPLDLTAREFALLETLLLRSGRVVSRGQLTEALCD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           +   + +N ++  + +LR+KL    +G   +   R LGY ++
Sbjct: 181 WQHEITDNGLDISMHRLRRKLHGTGVGIRTI---RGLGYMLE 219


>gi|239995786|ref|ZP_04716310.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Alteromonas macleodii
           ATCC 27126]
          Length = 226

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 78/161 (48%), Gaps = 5/161 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L ++    +  P++ +S    ++  +    +G +D + KP    E+LARV  +  R K  
Sbjct: 63  LEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNKEG 122

Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++   + G + +    R      +   L  +E ++LE L+ ++GK V ++ +   ++  
Sbjct: 123 EDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVWNY 182

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   + NV++ HIS+LR+K+        +++ R  GY I
Sbjct: 183 HFDP--QTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRI 221


>gi|228995640|ref|ZP_04155304.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
 gi|228764114|gb|EEM12997.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
          Length = 237

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + +P++ ++        +     G DD + KP    E++AR+ A+ RR  
Sbjct: 63  IEVCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN   +   +  F       +     V G+   L  +E  +L++  +N  +   KTQ
Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +F  ++   +   ++N V  HI KLRKK+
Sbjct: 183 LFRNVWD-SNYIEDDNTVMVHIRKLRKKI 210


>gi|260589582|ref|ZP_05855495.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Blautia hansenii DSM 20583]
 gi|260540150|gb|EEX20719.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Blautia hansenii DSM 20583]
          Length = 235

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125
           IR  S +P++ ++   + +  +     G DD + KP    E+ ARV ++ RR    N   
Sbjct: 71  IREVSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSLIRRYTTLNPAF 130

Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +E        D       R   V+G +  L  +E  +L +L +N+G+   K QI++ ++ 
Sbjct: 131 SEETDCICLKDMTIDRGNRSVTVRGALVELTGKEFDLLVFLASNKGRIFTKKQIYTQVWE 190

Query: 180 LFDE-AVEENVVESHISKLRKKL 201
             DE A +++ + S ISKLRKK+
Sbjct: 191 --DEYAFDDSNIMSFISKLRKKI 211


>gi|255281730|ref|ZP_05346285.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
 gi|255267797|gb|EET61002.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
          Length = 234

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 2/143 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L L R I   + VP++ I+        +   +SG DD + KP     + AR+AA+ RR  
Sbjct: 61  LALCREIAGTAGVPVLMITARDMEIDQVMCLESGADDYIAKPFSLAVLKARIAALLRRRG 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S+    +G IR+        ++     L   E ++L+Y + N+ + + K QI + ++
Sbjct: 121 GQDSSGWLISGDIRLQEKEMKAYLKDRELDLSLTEFKLLKYFLENKNQVLLKEQILARVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
                 VEEN +  +I +LR K+
Sbjct: 181 DSGGSFVEENTLMVNIRRLRTKV 203


>gi|226326489|ref|ZP_03802007.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198]
 gi|225205088|gb|EEG87442.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198]
          Length = 235

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R  S +P+I ++        L   + G DD + KP   RE++ARV  + RR     +  
Sbjct: 73  LRQFSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRRFYRPQDIV 132

Query: 127 ETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           +   + V  +     +   ++  L   E R+L+ L    GK + + Q+   +Y  +   V
Sbjct: 133 QNDKLVVIDEQAYQIQYNNKILDLTTAEFRLLKALATQPGKILTRDQLMDHLYDDY-RIV 191

Query: 186 EENVVESHISKLRKKL 201
            +  ++SHI  LR+KL
Sbjct: 192 TDRTIDSHIKNLRRKL 207


>gi|210616118|ref|ZP_03290951.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787]
 gi|210149938|gb|EEA80947.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787]
          Length = 226

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 12/167 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   I+A  ++P+I ++     +  +  F+ G D+ + KP   RE+L+R+  + R   
Sbjct: 61  FELFEEIKARKELPVIFLTALDGEEEIVKGFELGADEYITKPFRPRELLSRIRNVIRHTG 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   NR E     V  +     V    E   L   E +IL     N+G+ + + QI S I
Sbjct: 121 ILEENRQEIQIEHVKMNLEQGAVYKNNERIELTALEYKILALFFENKGRILTRGQILSGI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219
           +      V  N +  +I +LR+K+      DP     + + R +GY 
Sbjct: 181 WDESGNFVNNNTLTVYIKRLREKIEE----DPNAPKIIKTVRGMGYK 223


>gi|254414181|ref|ZP_05027948.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178856|gb|EDX73853.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 227

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 13/167 (7%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R+   +VP+I ++    +   +   D+G DD V KP    E+LARV A  RR 
Sbjct: 62  LEICRRLRSTGDKVPIILLTAKDEVSDRVAGLDAGADDYVVKPFSLEELLARVRAHLRR- 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQI 173
               N+ E      F+D        EV+       L  +E  +L+YL+++  + + + QI
Sbjct: 121 ----NQEEDPDTLQFADLSLNHSTREVYRGDRLIELTAKEFDLLDYLISHPRQVLTRDQI 176

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D   + N++E ++  LR KL        V + R +GY +
Sbjct: 177 LERVWG-YDFMGDSNIIEVYVRYLRLKLEANGEKRLVQTVRGVGYVL 222


>gi|126731218|ref|ZP_01747025.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
 gi|126708129|gb|EBA07188.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
          Length = 229

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R I+   +   VP+I +S        +   ++G DD V KP    E++ARV A  R
Sbjct: 65  IEVCRQIKTKPETRNVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLR 124

Query: 118 RLKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R + S    R E   I + S+       G+   L   E R+L   M   G+  ++ Q+  
Sbjct: 125 RARPSAAGLRLEYEDIVLDSETHRVTRNGKPLKLGPTEFRLLTTFMEKPGRVWSREQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ HI +LRK L    G D + + R  GY++
Sbjct: 185 RVWG-RDIYVDTRTVDVHIGRLRKALSQHGGQDLLRTVRGAGYAL 228


>gi|159898864|ref|YP_001545111.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891903|gb|ABX04983.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 243

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 18/190 (9%)

Query: 41  SAREDV-SAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
             RED+  A+   ++  G    E  R +R  S +P+I ++        +   + G DD +
Sbjct: 49  KVREDMPDAVLLDIMMPGLDGYETLRRLREFSSIPVIFLTAKDEEDDRIRGLELGADDYI 108

Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRER 154
            KP  HRE+++R+ A+ RR  V+  +A +       + V  D R+  V GE   L   E 
Sbjct: 109 GKPFSHRELVSRLRAVLRRHYVTPTQAVSTTKIDDRLTVDFDRREVLVNGERISLRPTEY 168

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR-KKLRNKLGFDPVD-- 211
           R+L +L+ N G  +    + + ++G       E   ESH  +L    LR K+  DP +  
Sbjct: 169 RLLYHLVQNAGFVMPHETLLAKVWG------PEYRDESHYLRLYVTYLRQKIEEDPANPH 222

Query: 212 ---SKRFLGY 218
              ++R +GY
Sbjct: 223 YILTERGVGY 232


>gi|254975419|ref|ZP_05271891.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092806|ref|ZP_05322284.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314548|ref|ZP_05356131.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517223|ref|ZP_05384899.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650329|ref|ZP_05397231.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306520295|ref|ZP_07406642.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 232

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 19/163 (11%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + IR +  QV +I ++        ++ F SG DD + KP   +E+L RV+A+ RR+
Sbjct: 63  IEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRV 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V ++   + P  +  D R     G+   L   E  I++YL++N  + +++ QI 
Sbjct: 123 AKDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQIL 182

Query: 175 SAIYG---LFD-EAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             ++G   L+D + V+ N+         +++RNK+  DP   K
Sbjct: 183 DEVWGTNYLYDFKIVDVNI---------RRIRNKIEDDPSKPK 216


>gi|254974251|ref|ZP_05270723.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091648|ref|ZP_05321126.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313376|ref|ZP_05354959.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255516063|ref|ZP_05383739.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649160|ref|ZP_05396062.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260682337|ref|YP_003213622.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685936|ref|YP_003217069.1| two-component response regulator [Clostridium difficile R20291]
 gi|306519270|ref|ZP_07405617.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260208500|emb|CBA61123.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211952|emb|CBE02450.1| two-component response regulator [Clostridium difficile R20291]
          Length = 229

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 18/153 (11%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR+ S VP+I  +   S    +   + G DD + KP    E+LAR+ A  RR  
Sbjct: 60  FEVLKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119

Query: 121 V-SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           V S++R     +  + D             G    L   E  I++ L  N+G+  +K Q+
Sbjct: 120 VYSSSRNSEDMVIQYKDLIINISKYVVSKNGIDLNLTHTEFEIVKLLATNQGRAFSKEQL 179

Query: 174 FSAI-----YGLFDEAVEENVVESHISKLRKKL 201
           ++ I     YG       ENV+ +HI++LR KL
Sbjct: 180 YNTIWKEPYYG------NENVLNTHINRLRNKL 206


>gi|29829025|ref|NP_823659.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606131|dbj|BAC70194.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 228

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 10/160 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNN 124
           IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR   +    
Sbjct: 68  IRKRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRNAHEEGGA 127

Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            AET    G + +    R   V G V  L R+E  +L  L    G    + QI S ++  
Sbjct: 128 AAETALRLGSVHIELPTRQVSVDGSVVQLTRKEFDLLALLAQRPGVVFRREQIISEVWRT 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E      +E H++ LR KLR     + V   R +GY +
Sbjct: 188 SWEGTGRT-LEVHVASLRSKLRMPALIETV---RGVGYRL 223


>gi|56962941|ref|YP_174668.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909180|dbj|BAD63707.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 231

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 12/150 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           + L + IR HS VP++ +S   S          G DD + KP    E+ ARV A  RR  
Sbjct: 61  MTLLKQIRVHSSVPILILSAKGSDLDKALGLGFGADDYIAKPFSLIELTARVQAAIRRAT 120

Query: 119 -LKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              V+  + E     G IR+  D       G+   L  +E ++L   M N  +   K Q+
Sbjct: 121 DYTVAEAKEERVLQRGGIRLDVDAFMAYKNGQAVKLTAKEFQLLHVFMENPKRVFTKEQL 180

Query: 174 FSAIYGLFDEAV--EENVVESHISKLRKKL 201
           +  I+   +E    EENV+  HI +LR+K+
Sbjct: 181 YQQIW---NEPYLGEENVINVHIRRLREKI 207


>gi|114562749|ref|YP_750262.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114334042|gb|ABI71424.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
          Length = 234

 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 19/199 (9%)

Query: 16  IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP--------RII 67
           IA    D ++LEGFN+L     +Q   R+ +  I+A  I      L LP        R +
Sbjct: 21  IAQILVDFLTLEGFNTL-----VQHDGRDVIETIKAQQIDFMILDLMLPYKDGLTICREL 75

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S +P++ ++        L   D G DD V KP   RE++ARV  I RR++ ++    
Sbjct: 76  RQFSMLPVLMLTARVDEIDRLMGLDIGADDYVCKPFSAREVVARVKTILRRVENTHGSQS 135

Query: 128 TGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              IR     +  +    +V  +   L   E R+L  L+   G   ++  +    Y + D
Sbjct: 136 EQVIRYKHLQINIERFKCQVDQQDVELTPVEFRLLHTLLKRPGVVHSRDSLMQVCY-VDD 194

Query: 183 EAVEENVVESHISKLRKKL 201
             V    ++SH+  LR KL
Sbjct: 195 RIVSSRTIDSHVKNLRHKL 213


>gi|332637971|ref|ZP_08416834.1| response regulator [Weissella cibaria KACC 11862]
          Length = 233

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 97/201 (48%), Gaps = 22/201 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68
           L K+GY     D  V+++G  +L+  E    S   D+  ++  L   +G +VL   R IR
Sbjct: 21  LTKEGY-----DVVVAMDGREALDLFE----SEDPDLVLLDQMLPELEGTEVL---RQIR 68

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNR 125
             SQ P+I ++   S    +   + G DD V KP  +RE+LAR+ A  RR   +   N  
Sbjct: 69  TKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQTPVVGQNVM 128

Query: 126 AETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++G I++ +    P+       G+   L  RE  +L +L  + G+ + +  +   ++G 
Sbjct: 129 DDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLAKHIGQVMTRDDLLQTVWG- 187

Query: 181 FDEAVEENVVESHISKLRKKL 201
           +D   +   V+  + ++R+K+
Sbjct: 188 YDYFGDVRTVDVTVRRIREKI 208


>gi|332162529|ref|YP_004299106.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666759|gb|ADZ43403.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330860750|emb|CBX71041.1| transcriptional regulatory protein cpxR [Yersinia enterocolitica
           W22703]
          Length = 227

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 14/209 (6%)

Query: 24  VSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80
           +S EGF +   L  +E +  +   + +A+   ++      +++ R +R  S++P+I ++ 
Sbjct: 20  LSGEGFTAELVLTGKEGIDGALSGNYTALILDIMLPDMSGIDVLRQVRKKSRLPIIMLTA 79

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--- 137
                  +   + G DD + KP + RE++AR+ A+ RR    +    +G   V + G   
Sbjct: 80  KGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD-EHPDVSSGDDGVITHGDLT 138

Query: 138 -----RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
                R  E QG+ F L   E  +LE L+ +  + V K ++     G   EA + + V+ 
Sbjct: 139 LNPSTRSSEWQGKPFDLTASEFNLLELLLRSPDRVVTKDELSDKGLGRPREAYDRS-VDV 197

Query: 193 HISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           HIS +R+KL    G    +++ R +GY I
Sbjct: 198 HISNIRQKLAALPGSTLNIETVRSIGYRI 226


>gi|315282416|ref|ZP_07870834.1| transcriptional regulatory protein SrrA [Listeria marthii FSL
           S4-120]
 gi|313613939|gb|EFR87665.1| transcriptional regulatory protein SrrA [Listeria marthii FSL
           S4-120]
          Length = 228

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           + + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR  
Sbjct: 60  MTICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 119 --LKVSNNR--AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQI 173
                 NN    ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+
Sbjct: 120 SAAPAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G +    +E  V+ HI +LR+K+
Sbjct: 180 LEQVWG-YQFYGDERTVDVHIKRLRQKI 206


>gi|312864458|ref|ZP_07724689.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus downei
           F0415]
 gi|311099585|gb|EFQ57798.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus downei
           F0415]
          Length = 219

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRR 152
           G DD + KP   +E+LARV A  RR K  ++       +R     +   V   +  + + 
Sbjct: 93  GADDYLVKPFGVQELLARVQAHLRREKREHHATLLLDNVRFDLSSKQIMVGETILDVTKS 152

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E  I ++L  +RG+  +K Q++  +YG F+E      +  HI  +R K R+  G +P+ +
Sbjct: 153 EYEICQHLAKHRGQVFSKEQLYDYLYG-FEERGTPAAIAEHIKNIRAKFRD-YGQEPIKT 210

Query: 213 KRFLGY 218
              +GY
Sbjct: 211 VWGIGY 216


>gi|301053513|ref|YP_003791724.1| multidrug resistance ABC transporter ATP-binding protein/permease
           [Bacillus anthracis CI]
 gi|300375682|gb|ADK04586.1| multidrug resistance ABC transporter, ATP-binding and permease
           protein [Bacillus cereus biovar anthracis str. CI]
          Length = 841

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/156 (20%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV  + +R +++ +++
Sbjct: 684 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKVLLKRYQITVSQS 743

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G +D   
Sbjct: 744 IQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 802

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 803 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 838


>gi|296314968|ref|ZP_06864909.1| transcriptional regulatory protein OmpR [Neisseria polysaccharea
           ATCC 43768]
 gi|296838165|gb|EFH22103.1| transcriptional regulatory protein OmpR [Neisseria polysaccharea
           ATCC 43768]
          Length = 225

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 18/168 (10%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +RA S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR +
Sbjct: 61  LDVLKNVRAQSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQ 120

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK---- 170
            S       N      + ++   R   V+     L   E  +LE LM + G+ V+K    
Sbjct: 121 HSGEQNNAPNSISVSDVVLYPAKRQASVKDTPLELTSTEFNLLEVLMRHAGQVVSKETLS 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +        FD +     ++ HIS +R KL +      + + R LGY
Sbjct: 181 VEALDRKLAKFDRS-----IDVHISSIRHKLGDA---SLIQTVRGLGY 220


>gi|266619369|ref|ZP_06112304.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288869086|gb|EFD01385.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 235

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 26/205 (12%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           LV DGY     ++  +++G + L+         + ++  +   ++  G   +E+ R IR 
Sbjct: 24  LVSDGYKVFKANN--AMDGLDILD---------KNEIHLVLLDIMMPGMDGMEMCRKIRE 72

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN------ 123
            + +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR    N      
Sbjct: 73  TNNIPIIMLSAKSTDLDKIMGLGTGADDYVTKPFNPLELTARVKSQLRRYTQLNPNSAVN 132

Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N      + +  D     V GE   L   E  IL  L +N G+  +  +IF  ++ 
Sbjct: 133 EKAGNEITIRGLIINKDNHKVTVYGEEIKLTPIEFDILYLLASNPGRVFSTDEIFEKVW- 191

Query: 180 LFDEAVEE--NVVESHISKLRKKLR 202
             +E V E  N V  HI +LR K++
Sbjct: 192 --NEKVYEANNTVMVHIRRLRGKMK 214


>gi|264680517|ref|YP_003280427.1| two component heavy metal response [Comamonas testosteroni CNB-2]
 gi|262211033|gb|ACY35131.1| two component heavy metal response [Comamonas testosteroni CNB-2]
          Length = 235

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R   Q P++ ++    ++  +    +G DD + KP    E++AR+ A+ RR   +    
Sbjct: 72  LRQSRQTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGLQAQATP 131

Query: 127 ETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
           E   +R+     D         G+   L  +E  +L  L+  +G+ +++T++ S ++ + 
Sbjct: 132 EATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQVWDMN 191

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   E NVVE  + +LR KL        + + R +GY ++
Sbjct: 192 FDS--ETNVVEVAVRRLRLKLDAPFELPLLHTVRGMGYVLE 230


>gi|238021564|ref|ZP_04601990.1| hypothetical protein GCWU000324_01464 [Kingella oralis ATCC 51147]
 gi|237866178|gb|EEP67220.1| hypothetical protein GCWU000324_01464 [Kingella oralis ATCC 51147]
          Length = 235

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 17/165 (10%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAE 127
           H  +P+I ++        +   + G DD + KP   RE+ AR+ A+ RR   +  N  ++
Sbjct: 71  HPSLPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELNARIKALLRRTQRQPENECSQ 130

Query: 128 TGP-----------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             P            +  +       QG+  PL   E R+L  L+A+  +   + ++ +A
Sbjct: 131 NEPNPNPPQAQWQQWQDDTQAHCIRHQGQALPLTLGEYRLLRTLIAHPQRVYTREELLTA 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYS 219
           ++G  +   + + + +HI  LR+KLRN    DP  + +   +GYS
Sbjct: 191 MFG-SNHPSDPHTINTHIRALRQKLRNA-QIDPACIHTHHGIGYS 233


>gi|229095705|ref|ZP_04226685.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228687738|gb|EEL41636.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 234

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 19/229 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 7   LLVDDETAILQLLTTILEKEGFSHITTATSAELALSLTEQNNYDLIILDVML--PGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR +K
Sbjct: 65  DICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 121 VS---NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +     +A +   G   +     +  V G V     +  ++L +   N     +K +I+
Sbjct: 125 QTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
             ++G      ++N V  HI KLR+K+      DP     + + R LGY
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQ----DPSKPEYIKTVRGLGY 229


>gi|255654120|ref|ZP_05399529.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296449841|ref|ZP_06891608.1| response regulator [Clostridium difficile NAP08]
 gi|296877905|ref|ZP_06901925.1| response regulator [Clostridium difficile NAP07]
 gi|296261328|gb|EFH08156.1| response regulator [Clostridium difficile NAP08]
 gi|296431102|gb|EFH16929.1| response regulator [Clostridium difficile NAP07]
          Length = 244

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 16/171 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L    R  +  P+I ++   S    L     G DD + KP +  E++AR+ AI+RR +
Sbjct: 69  FDLCTNFRKKTIAPIIFLTARASDYDKLSGLAIGGDDYITKPFNTMELVARIKAIFRRQQ 128

Query: 121 ----VSNNRAETGPIRVFSDGRDP--------EVQGEVFPLPRRERRILEYLMANRGKRV 168
               V  N +E   I V++ G            V G+      +E  +LE+   N  +  
Sbjct: 129 LERSVLCNHSEN--ILVYNYGYIVLDMAHALLTVSGKNVECTAKELELLEFFCQNPNRVF 186

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGY 218
             + ++  I+GL     +E  V  HISKLRKK L +   +  + + R +GY
Sbjct: 187 TTSHLYDKIWGLQGYG-DEKTVTIHISKLRKKILDDNKPYKVITNLRGIGY 236


>gi|251798812|ref|YP_003013543.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546438|gb|ACT03457.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 240

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 16/169 (9%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           R IR  S VP++ IS        +   ++G DD ++KPIH   +LA+V    RR      
Sbjct: 65  RQIRTRSNVPILFISAREGEMDQVMAIENGGDDYLSKPIHLDLLLAKVKGALRRAYGEYA 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +++  E   +R+     + E QG    L + ER + E  M    + VA+ Q+
Sbjct: 125 AASAASAAASSELELYGLRLNLSRNELEWQGGRTELTKNERLLAEAFMKKPDEIVAREQL 184

Query: 174 FSAIYGLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             A   L+D+   V++N +  ++++LRKKL        +++ R  GY +
Sbjct: 185 LEA---LWDDVQFVDDNTLTVNVTRLRKKLEEIGIIKAIETVRGQGYRL 230


>gi|167768929|ref|ZP_02440982.1| hypothetical protein ANACOL_00246 [Anaerotruncus colihominis DSM
           17241]
 gi|167668569|gb|EDS12699.1| hypothetical protein ANACOL_00246 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +RA +  VP++ ++    +   +   D G DD + KP    E+LARV A+ RR  
Sbjct: 61  EVVRALRAQNNAVPVLLLTARDEISDKVTGLDCGADDYMTKPFSPEELLARVRALSRRQG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V +       + +    R      +   L  +E  +L  L++N      K ++ + ++G
Sbjct: 121 EVQHEELRYADLCLNLSTRTLSRGEKSVSLGYKEFEVLHILLSNPRAITPKEELITRVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   E+N VE++IS LRKK         + + R +GY ++
Sbjct: 181 A-DSDAEDNNVEAYISFLRKKFFYLGSQTAISAVRKVGYRLE 221


>gi|167590140|ref|ZP_02382528.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia ubonensis Bu]
          Length = 227

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 100/216 (46%), Gaps = 15/216 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  + +DG++  G +  E E++       D+  ++  L   G+    L + +
Sbjct: 18  KGLTEAGYVVDWVEDGIT--GLHQAETEDY-------DLLVLDVML--PGQDGWTLLQNL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           R     P++ ++    +   +   + G DD + KP    E+ AR+ ++ RR +   +N  
Sbjct: 67  RRSKSTPVLFLTAMDDVGDRVKGLELGADDYLAKPFDFVELTARIKSVLRRGQPRESNTL 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
               + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ + F+   
Sbjct: 127 RVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDMNFNS-- 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 185 DTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|160895900|ref|YP_001561482.1| two component heavy metal response transcriptional regulator
           [Delftia acidovorans SPH-1]
 gi|160361484|gb|ABX33097.1| two component heavy metal response transcriptional regulator,
           winged helix family [Delftia acidovorans SPH-1]
          Length = 230

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 65  RIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           RI+R    A  QVP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  +R +   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + FD   + NV++  I +LR K+ +      + + R +GY++D
Sbjct: 181 DMNFDS--DSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGYTLD 222


>gi|116690673|ref|YP_836296.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170734017|ref|YP_001765964.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116648762|gb|ABK09403.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169817259|gb|ACA91842.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 242

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 24/170 (14%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+   +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR    
Sbjct: 63  LKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR---- 118

Query: 123 NNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q+  
Sbjct: 119 --GAGGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVD 176

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
            +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 177 HLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRISTVRGLGYCLE 219


>gi|26990167|ref|NP_745592.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985105|gb|AAN69056.1|AE016538_5 transcriptional regulatory protein RstA, putative [Pseudomonas
           putida KT2440]
          Length = 279

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R++R  SQ +P++ ++        +   + G DD V KP   R +LARV  + RR 
Sbjct: 107 LQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS 166

Query: 120 KVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            V+  R +      G +R+    R    +GE   L   E  +L  L  N G+ + + +I 
Sbjct: 167 SVNEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRIL 226

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
             + G+     + + V+  ISKLR+K  +  G       V  K +L   ++W
Sbjct: 227 QQLRGIEFNGTDRS-VDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEW 277


>gi|194336101|ref|YP_002017895.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308578|gb|ACF43278.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 227

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 80/162 (49%), Gaps = 4/162 (2%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R IR   + VP++ ++   +L+  +   D+G +D + KP    E+LAR+    R  
Sbjct: 60  IEVCRQIRKTGNAVPILFLTAKDTLEDVIFGLDAGANDYIKKPFEFEELLARIRVQLRNK 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +               L  +E  +LEYL+ N+ +   +++I   ++ 
Sbjct: 120 NRNDDSLNAGILNINPVTHQVFCASTEVTLTPKEFALLEYLVRNKDRVCTRSRIIEHVWD 179

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + FD   + +V++ +I+ LR+KL      + + + R +GY +
Sbjct: 180 IHFDS--DTSVIDVYITFLRRKLEAAGCGNIIQTIRGVGYIV 219


>gi|319781901|ref|YP_004141377.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167789|gb|ADV11327.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 239

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE  ++L + +RA   VP++ ++      + +   ++G DD + KP   RE++ R+  I 
Sbjct: 73  GETGVDLTKSLRAEKNVPILMLTALSETDSRISGLEAGADDYLPKPFDPRELILRINNIL 132

Query: 117 RR-LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR    +  + E    GP       R+ +  GE   L  RE+ IL    A  G+ + + +
Sbjct: 133 RRGGPATTPKVEQLVFGPYTFQIARRELKRGGEALKLTDREQEILAIFAARAGETIPRHE 192

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +        D  V E  ++  I++LR+K+
Sbjct: 193 LVGD-----DSEVGERTIDVQINRLRRKI 216


>gi|309790007|ref|ZP_07684582.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227950|gb|EFO81603.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 228

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S VP+I ++       TL   + G DD + KP   RE++AR  AI RR  
Sbjct: 62  LEVCRQLRRESSVPIIMLTARVEETDTLIGLELGADDYIAKPFRAREVVARARAILRRAS 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + +  D    EV G    L   E  +L  LM N G+ +++ Q+  A 
Sbjct: 122 GALAPPSMVRGGGVSLDLDRHTTEVAGHTVELTPTEFALLLALMRNPGRPLSRAQLLDAA 181

Query: 178 YGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            G   +A E  E  +++HI    K LR K+  DP + +R L
Sbjct: 182 QG---DAFEGYERTIDAHI----KNLRRKIEADPANPRRIL 215


>gi|300718589|ref|YP_003743392.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299064425|emb|CAX61545.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 220

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D AL+  G +     +G +++   N  E    LQS     +          G ++
Sbjct: 3   LLVVEDDALLLGGLVQALTTEGYAVDAAKNGAEACALLQSGQYSLIVLDLGLPDRDGRQL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R  +    +P++ ++   +L+  +D  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 63  LRQWR--KETIDLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELKARVRALIRRYQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  + G + +    +   +  +   L  +E  +L  L+    + V +  +   +Y 
Sbjct: 121 GRSDNLLQQGDLSLNLSSQQVYIDNQPVELTPKEFALLTRLLMRISQTVHRETLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+    N +E HI  LR+    KLG D + + R +GY ++
Sbjct: 181 WQDD-TGSNTLEVHIHNLRR----KLGKDRIKTVRGVGYRLE 217


>gi|291444930|ref|ZP_06584320.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291347877|gb|EFE74781.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 243

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 20/149 (13%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +++R+ + VP+I  +        +   + G DD + KP     + AR+AA+ RR + + +
Sbjct: 65  KMLRSITDVPVIIATARDDESEIVRLLNDGADDYLTKPFSVEHLSARMAAVLRRSRAAGS 124

Query: 125 RAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             E  P RV   G        R  E+ G    L RRE  +L +L    G  VA+ ++ + 
Sbjct: 125 --EAPPPRVIRVGGLSIDPLRRSAELDGAELDLARREFDLLTFLAGRPGVVVARKELLAE 182

Query: 177 I----YGLFDEAVEENVVESHISKLRKKL 201
           +    YG      ++  ++ H+S LR+KL
Sbjct: 183 VWQQSYG------DDQTIDVHLSWLRRKL 205


>gi|291037430|ref|ZP_06568394.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter xylinus NBRC 3288]
 gi|330990829|ref|ZP_08314784.1| Transcriptional activator protein CopR [Gluconacetobacter sp.
           SXCC-1]
 gi|329761975|gb|EGG78464.1| Transcriptional activator protein CopR [Gluconacetobacter sp.
           SXCC-1]
          Length = 228

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 17/117 (14%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV---------QG 144
           G DD + KP   RE++ARV  + RR   S++   T  + V     D E+          G
Sbjct: 100 GADDYMIKPFALRELVARVQVLLRR---SSSFQHTTIMNV----ADVELNLLTLAVTRNG 152

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           E   L  +E ++LEY M N G  +++  +   ++ + D  V  N+VE+HI +LR+KL
Sbjct: 153 EKVLLQPQELKLLEYFMRNAGTVLSRQMLLKDVWHM-DFPVRTNIVETHICRLREKL 208


>gi|228971998|ref|ZP_04132616.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978608|ref|ZP_04138981.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228781104|gb|EEM29309.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228787712|gb|EEM35673.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 228

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 71  LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G +D   
Sbjct: 131 IQVGNVLLNRKTFEVTSGEQTVMLPLKEFELLFTLGSKSGRTCSREQLIEEIWG-YDFEG 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 190 NERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLE 225


>gi|229060280|ref|ZP_04197647.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228719007|gb|EEL70623.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 231

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 103/228 (45%), Gaps = 36/228 (15%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP------- 64
           Y+A +G  G+ +  F ++                ++ FL  + E VL    LP       
Sbjct: 16  YVAKYGYQGIVISDFQNV----------------LDIFLEEQPELVLLDINLPSFDGYYW 59

Query: 65  -RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---- 119
            R IRA S  P++ IS        +   ++G DD + KP H+  ++A++ +  RR     
Sbjct: 60  CRQIRAVSTCPILFISAREGTMDQVMALENGGDDFIPKPFHYEVVMAKIRSHLRRAYGDY 119

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K+     E   + ++ +    +++ +   + R E  +LE LM N  + V++  + + +
Sbjct: 120 APKLEERMVEQQGLSLYPERLVLKLRNQEIDITRNEAILLETLMKNYPRVVSREVLLNKL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223
           +   +  V++N +  + +++RKKL+       +++ R +GY   I W+
Sbjct: 180 WD-SESYVDDNTLSVNTTRVRKKLKTLQIEGAIETIRSVGYRLHITWD 226


>gi|255281501|ref|ZP_05346056.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255267989|gb|EET61194.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 229

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           EL + IRA  Q  +P++ +S   SL   +     G DD + KP    E+LAR+ A  RR 
Sbjct: 62  ELLKRIRAEKQPDIPVLVLSAKSSLADKVQLLTGGADDYMTKPFEPEELLARITACLRRA 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K + +      + +    R   V G+   L   E  IL  L     K  ++  +
Sbjct: 122 QRMPAAKPAADDISYKKLCICPAARRATVNGQELVLTPHEYDILLLLARELEKVFSRETL 181

Query: 174 FSAIY--GLFDEAVEENVVESHISKLRKKL 201
           +  ++  G +    E+N V  H+S LRKK+
Sbjct: 182 YERVWQGGYYG---EDNTVNVHVSNLRKKI 208


>gi|206576950|ref|YP_002240552.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
 gi|206566008|gb|ACI07784.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
          Length = 229

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 9/162 (5%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R++  +  +P++ ++        L   + G DD + KP   RE+ ARV  + RRL+    
Sbjct: 68  RLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ--KF 125

Query: 125 RAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            A +  +RV     D +       G+   L R E  +L+ L+   G+  ++ Q+   ++ 
Sbjct: 126 AAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVWS 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              E+++   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAWESLDRT-VDTHIKTLRAKLRAVNPEVTPINTHRGMGYSL 226


>gi|107027025|ref|YP_624536.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116691778|ref|YP_837311.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|105896399|gb|ABF79563.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116649778|gb|ABK10418.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
          Length = 228

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 15/216 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  + +DG++  G +  E EE+       D+  ++  L   G+    L + +
Sbjct: 19  KGLTEAGYVVDWVEDGIT--GQHQAETEEY-------DLLVLDVML--PGQDGWTLLQNL 67

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           R     P++ ++    +   +   + G DD + KP    E+ AR+ +I RR +   +N  
Sbjct: 68  RRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQPRDSNTL 127

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
               + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ + F+   
Sbjct: 128 RVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDMNFNS-- 185

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 186 DTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 221


>gi|90414946|ref|ZP_01222909.1| putative transcriptional regulator CpxR [Photobacterium profundum
           3TCK]
 gi|90323946|gb|EAS40544.1| putative transcriptional regulator CpxR [Photobacterium profundum
           3TCK]
          Length = 222

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 7/160 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R I      P++ ++      + LD   +G D  V KP    E+LAR+ +I RR+ 
Sbjct: 61  LQVARRICQRFATPILMLTALGDEASMLDGLQAGADQYVAKPFRVPELLARITSILRRVG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +   R             D  +Q    PL   E  +LEYL+ + G  V+K ++   +   
Sbjct: 121 LERQRQGLNNCTA-----DLSIQFSRLPLTGTESELLEYLIKHDGIVVSKAELQKEVLK- 174

Query: 181 FDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYS 219
            D    +  ++ HIS +R+K L++ L    + + R  GYS
Sbjct: 175 KDLCPFDRNLDMHISNIRRKMLQSGLSKQHIKTVRGKGYS 214


>gi|78776730|ref|YP_393045.1| two component transcriptional regulator [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497270|gb|ABB43810.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas denitrificans DSM 1251]
          Length = 229

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 5/166 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR  S+V ++ +S     +  +   D+G DD + KP    E+LAR+ A  RR   
Sbjct: 64  EFIREIREISKVTIVVLSARDDEKEIVAALDAGADDYITKPFSVNELLARIRANLRRSIS 123

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N   +     + +    RD   + E   L   E  +L+Y + N  K +   QI   ++
Sbjct: 124 GENISSKITCAELEMDIASRDIFFKNEQLKLTPIEFELLKYFLLNANKTLTHKQILKEVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           G+  ++ E   + ++++ LRKK+ +N      + ++  +GY    N
Sbjct: 184 GVGYQS-EMQYLRTYVNTLRKKIEQNSTRPTYIKTESGIGYRFCCN 228


>gi|58338068|ref|YP_194653.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227902754|ref|ZP_04020559.1| response regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58255385|gb|AAV43622.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227869417|gb|EEJ76838.1| response regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 228

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 85/169 (50%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR  
Sbjct: 61  IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 120

Query: 120 -KVSNNRA---ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
            +V + +    E GP+ +  D  + + + G+   L   E  IL YL+A+   RV +  +I
Sbjct: 121 KQVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGIL-YLLASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 180 FERVWQQ-ESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227


>gi|87125177|ref|ZP_01081023.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
 gi|86166946|gb|EAQ68207.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
          Length = 248

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 45/219 (20%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQ 72
           +S+ G+N +        +A +   A+E F + + + V+    +P++        +R  S 
Sbjct: 28  LSMIGYNVI--------TASDGNEALECFRVNEPDLVVLDVMMPKLDGYGVCQELRKESD 79

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------------- 118
           VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR              
Sbjct: 80  VPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVDKEQVAGIPNSGL 139

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++V++ R +T   +VF       + G  F L       LE L++  G+  ++ +I   ++
Sbjct: 140 IQVADLRIDTNKRQVFRGDERIRLTGMEFSL-------LELLVSRSGEPFSRGEILKDVW 192

Query: 179 GLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           G   E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 193 GYTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 227


>gi|118581556|ref|YP_902806.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504266|gb|ABL00749.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 228

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 16/207 (7%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYP 82
            + +G + LE        ++ D+  ++  L G  G +V +  R     S++P++ ++   
Sbjct: 31  CAFDGISGLEA----ARDSKPDLIVLDLMLPGMLGTEVCKALRKDTTTSRIPVLMVTAKG 86

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD-----G 137
                +  F+ G DD + KP   RE+  R+ AI RR  V        P+    D      
Sbjct: 87  DEIDRVVGFELGADDYIVKPFSMRELCLRIRAILRRCDVEQPTG--SPLLTLGDIVIDRE 144

Query: 138 RDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
           R   V  +    L   E ++L YL+  RG+ +++ Q+   ++   D   +   V++HI++
Sbjct: 145 RHRVVSADAETDLTSTEFKLLLYLVERRGRVISRDQLLQDVWSYHDVG-DTRTVDTHITR 203

Query: 197 LRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           LR KL      + + + R  GY I+ N
Sbjct: 204 LRGKLGAP--GEQIKTVRGFGYKIEEN 228


>gi|69247505|ref|ZP_00604375.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|293379348|ref|ZP_06625492.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
 gi|293557181|ref|ZP_06675732.1| regulatory protein VanR [Enterococcus faecium E1039]
 gi|293563865|ref|ZP_06678296.1| regulatory protein VanR [Enterococcus faecium E1162]
 gi|293569177|ref|ZP_06680483.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|294614522|ref|ZP_06694434.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|294619788|ref|ZP_06699184.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|294623741|ref|ZP_06702569.1| regulatory protein VanR [Enterococcus faecium U0317]
 gi|68194830|gb|EAN09305.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|291588146|gb|EFF19988.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|291592615|gb|EFF24212.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|291593972|gb|EFF25450.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|291596695|gb|EFF27918.1| regulatory protein VanR [Enterococcus faecium U0317]
 gi|291600662|gb|EFF30963.1| regulatory protein VanR [Enterococcus faecium E1039]
 gi|291604176|gb|EFF33679.1| regulatory protein VanR [Enterococcus faecium E1162]
 gi|292641871|gb|EFF60037.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
          Length = 229

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 61  MQVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPE----VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
           ++++ ++ +   +      +D      + G+   L   E  IL YL+A+   RV +  +I
Sbjct: 121 MQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGIL-YLLASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
           F  ++   +  V    V  H+S LR K+    G + V    + +GY ID
Sbjct: 180 FERVWKQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|313115296|ref|ZP_07800772.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622380|gb|EFQ05859.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 231

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 5/158 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125
           IR  S+VP++ ++     +  ++  + G DD + KP   +E+L RV AI  R     N  
Sbjct: 70  IRRTSRVPVLMLTARGEAEDRIEGLEIGADDYLAKPFLPKELLLRVGAILSRAYPRQNEM 129

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            E     V  D  +    GE   L  +E ++ E L  N G+ V    +   I G F +  
Sbjct: 130 VELAGATVDMDNAEVWKNGEKQALTAKEMQLFEKLYQNAGRIVTTGILCETICGEFWQGY 189

Query: 186 EENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
            E+ + +HI  LR+K+       PV   + + LGY ++
Sbjct: 190 -ESTLSTHIRHLREKIEENPS-KPVSLVTAKGLGYRLN 225


>gi|302338212|ref|YP_003803418.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635397|gb|ADK80824.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 232

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 12/167 (7%)

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ + IR+  +V   P+I ++        +   + G DD + KP   + ++AR+ A+ R
Sbjct: 63  VEVCKRIRSREEVKDIPIIMLTAKSEDSDVISGLEVGADDYMTKPFSPKVLVARIRALLR 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKT 171
           R ++        P+    D     ++ EV        L   E  ILE+L  N G   +++
Sbjct: 123 RKQLKEFPPREEPVITIHDIVIDTIRHEVKCSDVSLDLSVTEFSILEFLARNPGWVFSRS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           QI  A+ G  D  V E  V+  I  LRKKL++K   D +++ R +GY
Sbjct: 183 QIIGAVKG-EDYPVTERSVDVQILGLRKKLKDK--GDYIETVRGVGY 226


>gi|259415942|ref|ZP_05739862.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter sp. TrichCH4B]
 gi|259347381|gb|EEW59158.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter sp. TrichCH4B]
          Length = 229

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGP 130
           +P+I +S        +   ++G DD V KP    E++ARV    RR++ +    R E   
Sbjct: 80  IPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVRPATVGMRLEFDD 139

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           I + ++        +   L   E R+L   M   G+  ++ Q+   ++G  D  V+   V
Sbjct: 140 IILDAETHKVSRSEQPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG-RDIYVDTRTV 198

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + HI +LRK L    G DPV + R  GY++
Sbjct: 199 DVHIGRLRKALTQHGGDDPVRTVRGAGYAL 228


>gi|257140136|ref|ZP_05588398.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 257

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 70  LDVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 128

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q
Sbjct: 129 -----GAGGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 184 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 229


>gi|238764767|ref|ZP_04625710.1| Two-component system response regulator [Yersinia kristensenii ATCC
           33638]
 gi|238697058|gb|EEP89832.1| Two-component system response regulator [Yersinia kristensenii ATCC
           33638]
          Length = 239

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 18/211 (8%)

Query: 24  VSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80
           +S EGFN+   L  +E + ++   + +A+   ++      +++ R +R  S++P+I ++ 
Sbjct: 32  LSGEGFNAELVLTGKEGIAAALSGEYTALILDIMLPDMSGIDVLRQVRKKSRLPIIMLTA 91

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVSNNRAETGPIRV 133
                  +   + G DD + KP + RE++AR+ A+ RR           ++      + +
Sbjct: 92  KGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDEHPDAPSADDSVITHSDLTL 151

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
               R  E QG+ F L   E  +LE L+ +  + V K ++     G   EA + + V+ H
Sbjct: 152 NPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDELSDKGLGRPREAYDRS-VDVH 210

Query: 194 ISKLRKKLR----NKLGFDPVDSKRFLGYSI 220
           IS +R+KL     N L  + V   R +GY I
Sbjct: 211 ISNIRQKLAALPGNTLNIETV---RSIGYRI 238


>gi|189348833|ref|YP_001942028.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|189338971|dbj|BAG48038.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 227

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 15/216 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  + +DG++  G +  E EE+       D+  ++  L   G+    L + +
Sbjct: 18  KGLTEAGYVVDWVEDGIT--GQHQAETEEY-------DLLVLDVML--PGQDGWTLLQNL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           R     P++ ++    +   +   + G DD + KP    E+ AR+ +I RR +   +N  
Sbjct: 67  RRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQPRDSNTL 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
               + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ + F+   
Sbjct: 127 RAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDMNFNS-- 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 185 DTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 236

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR  
Sbjct: 63  MEVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRRHT 122

Query: 121 VSNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               + ET        G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 QIVAQEETNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 230


>gi|153939744|ref|YP_001390056.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935640|gb|ABS41138.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318142|gb|ADF98519.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 232

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 21/175 (12%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S+VP++ ++        +   D G DD + KP      ++R+ A+ RR   
Sbjct: 62  DLCKKIRKTSKVPIMFLTAADEETDIIMGLDIGGDDYITKPFKLAVFMSRINALLRR--- 118

Query: 122 SN--NRAETGPIRVFSDGRDPE-VQGEVFP------LPRRERRILEYLMANRGKRVAKTQ 172
           SN  N+A+T    + S+G + + ++GEV+       L   E ++L   M N    ++  Q
Sbjct: 119 SNNFNQADT---ELNSNGMNVQLLKGEVYKNGKQLDLTASEYKLLCMFMENPDIVLSPEQ 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY---SIDW 222
           I S ++   +  ++ N +  +I +LR K+ +  G +P  + + R +GY   ++DW
Sbjct: 176 ILSRLWDCNENYIDNNTLTVYIRRLRTKIEDNPG-EPQKIVTVRRMGYKWSTVDW 229


>gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum
           ATCC 13032]
 gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032]
 gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032]
          Length = 226

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 96/212 (45%), Gaps = 20/212 (9%)

Query: 24  VSLEGFNSLEFEE---WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80
           +S EGF+++   +    +++++RE    I   L+  G   +++ R+IR  S VP+I ++ 
Sbjct: 22  LSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMNGIDICRLIRQESSVPIIMLTA 81

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSD 136
                  +   +SG DD VNKP   +E++AR+ A   RL+ + +      E G + +   
Sbjct: 82  KTDTVDVVLGLESGADDYVNKPFKAKELVARIRA---RLRATVDEPSEIIEVGDLSIDVP 138

Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196
               +  G    L   E  +L  L     +   + ++   ++G +  A +  +V  H+ +
Sbjct: 139 AHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWG-YRHASDTRLVNVHVQR 197

Query: 197 LRKKLRNKLGFDP-----VDSKRFLGYSIDWN 223
           LR K+      DP     V + R +GY    N
Sbjct: 198 LRAKIEK----DPENPQIVLTVRGVGYKTGHN 225


>gi|328948409|ref|YP_004365746.1| transcriptional regulator [Treponema succinifaciens DSM 2489]
 gi|328448733|gb|AEB14449.1| two component transcriptional regulator, winged helix family
           [Treponema succinifaciens DSM 2489]
          Length = 233

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 17/159 (10%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128
            + +P+I +S   + +  ++    G D+ V KP   + ++ARV +   RL  +    E  
Sbjct: 74  KATIPVIIVSARDADEDIIEGLGFGADEFVTKPFSPKVLVARVQSKLARLCATEASVEET 133

Query: 129 ---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
              GP  ++ +    + + E  PL  +E  +LEYL+ N  K     Q+F+A++   F + 
Sbjct: 134 INFGPYTLYCNSCILKKRTEKIPLSTKEYEVLEYLVKNNNKPATPEQVFNAVWKTPFGDM 193

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGY 218
               V   ++ +LR+K+      DP + K       LGY
Sbjct: 194 TAVGV---YVQRLRRKIEE----DPANPKYIKTIFGLGY 225


>gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 247

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 6/148 (4%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ R +RA +  VP++ ++   +++  +    +G DD V KP    E++AR+  + RR 
Sbjct: 79  LEVLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRS 138

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEV-QGEV-FPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  +   +E     +  D    EV +G+V   L   E  +L +LM N  + ++K QI  
Sbjct: 139 GMTAAQQGSELAVGDLTLDEDSHEVRRGDVEVDLTATEFELLRFLMRNPRRVLSKAQILD 198

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203
            ++  +D   + NVVE +IS LRKK+ N
Sbjct: 199 RVWH-YDFGGQSNVVELYISYLRKKIDN 225


>gi|307154447|ref|YP_003889831.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984675|gb|ADN16556.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 11/136 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR----AETGPIRVFSDGRDPEVQGEV 146
            D+G DD V KP    E+ AR+ A+ RR   SN       E   +R+  +  +    G  
Sbjct: 91  LDAGADDYVVKPFDLPELAARIRALLRR---SNTTLPPVLEWENLRLNPNSCEVNYAGHP 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  +E ++LE  + N    ++++QI   ++  F++   E  V+ HI +LRKKL+  +G
Sbjct: 148 LHLTPKEYKLLELFLRNTHLVLSRSQILDHLWS-FEDPPSEEAVKVHIKELRKKLK-AVG 205

Query: 207 FDP--VDSKRFLGYSI 220
             P  +++   LGY +
Sbjct: 206 ASPDLIETVYGLGYRL 221


>gi|304396273|ref|ZP_07378155.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304356642|gb|EFM21007.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 226

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 6/159 (3%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R+ R     P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR +  
Sbjct: 63  LIRLRRQKKMTPVLILTARDTINERIAGLDAGADDYLIKPFSLDELLARIRALIRRHVNQ 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++    G + +    R   +   +  L  +E  IL  LM   G  V +  ++  IY  +
Sbjct: 123 GDSHVRVGALALDMTHRQIMLNDVLLDLTPKEFAILSRLMLKAGNPVHREILYQDIYN-W 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     N +E HI      LR+K+G   + + R  GY++
Sbjct: 182 ETEPSTNTLEVHI----HNLRDKIGKSAIRTVRGFGYAL 216


>gi|299769456|ref|YP_003731482.1| response regulator [Acinetobacter sp. DR1]
 gi|298699544|gb|ADI90109.1| response regulator [Acinetobacter sp. DR1]
          Length = 231

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           +P++ ++   +L   L  F +G DD + KP    E++ R+ A+ +R   +V++++ +   
Sbjct: 77  IPVLMLTARDTLDDKLKGFTAGTDDYLVKPFDFNELVMRIRALIKRAAGEVTHHKIQIHD 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + S  +     G    LP  + ++L+ LM    K V K ++   ++G  DE  E + +
Sbjct: 137 LILDSATQTVVRAGNNIELPPIQFKLLKILMRQSPKVVTKQELMMELWG--DEEPESDAL 194

Query: 191 ESHISKLRKKLRNKLGFDP 209
            SHI  LRK +     FDP
Sbjct: 195 RSHIYNLRKMVDKP--FDP 211


>gi|297625346|ref|YP_003687109.1| Response regulator, two-component system [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921111|emb|CBL55658.1| Response regulator, two-component system [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 239

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S   ++ ++        L     G DD + KP   R ++ARV A+ RR +
Sbjct: 71  VEVARRIRTFSDCYILMLTARADEVDELIGLSVGADDYLTKPFSPRLLIARVQAMQRRPR 130

Query: 121 VSNNRAETGPIRVFSDGRDP---EVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +    +  P+R+     DP   EVQ       L R E  +L +L  N  + +++ ++  
Sbjct: 131 SAITPPDEQPLRIGELTIDPAAREVQLGTREIALTRTEFDLLAHLARNPRRAISRDELIE 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201
           A++G+   + ++ +V++HI  LRKKL
Sbjct: 191 AVWGV-GWSGDDQLVDTHIGHLRKKL 215


>gi|293375525|ref|ZP_06621802.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325840212|ref|ZP_08166979.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
 gi|292645865|gb|EFF63898.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325490360|gb|EGC92685.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
          Length = 222

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 25/201 (12%)

Query: 9   ALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
            L  +GY      DG  +L  F+   ++  L      DVS         GE   E+ + I
Sbjct: 19  CLDNEGYQTEVAHDGKTALSLFHQYTYDLILLDRMLPDVS---------GE---EICKQI 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S +P+I ++     +  ++ F  G DD + KP +  E+L R+ AI +R    +N+  
Sbjct: 67  RQQSDIPIIMLTAKIEDEDRIEGFQLGCDDYICKPFNIMELLLRIKAILKRTIKKDNQ-- 124

Query: 128 TGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS-AIYGL 180
              I+  +D          +V+G+  PL   E +IL  L ++  K   + ++ + A+ G 
Sbjct: 125 -DLIKFGTDFELNTLSHQLKVKGQEVPLTNTEYKILLALSSHPQKVYTREELLAYAVDGY 183

Query: 181 FDEAVEENVVESHISKLRKKL 201
            ++   + V++SHI  LR K+
Sbjct: 184 VEKF--DRVIDSHIKNLRHKI 202


>gi|260462374|ref|ZP_05810582.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031868|gb|EEW33136.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 241

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 13/157 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           +  P++ +S    +   +    +G DD + KP    E+LARV  + RR   S   AET  
Sbjct: 88  NTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRR--ASAKEAETVY 145

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             G + +               L  RE R+LEYLM + G+ V +T +   ++   FD   
Sbjct: 146 RVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP-- 203

Query: 186 EENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           + NV++ H+S+LR K+    GFD   + + R  GY +
Sbjct: 204 QTNVIDVHVSRLRGKIEK--GFDKPILHTVRGAGYML 238


>gi|239941487|ref|ZP_04693424.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987950|ref|ZP_04708614.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 240

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 20/149 (13%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +++R+ + VP+I  +        +   + G DD + KP     + AR+AA+ RR + + +
Sbjct: 62  KMLRSITDVPVIIATARDDESEIVRLLNDGADDYLTKPFSVEHLSARMAAVLRRSRAAGS 121

Query: 125 RAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             E  P RV   G        R  E+ G    L RRE  +L +L    G  VA+ ++ + 
Sbjct: 122 --EAPPPRVIRVGGLSIDPLRRSAELDGAELDLARREFDLLTFLAGRPGVVVARKELLAE 179

Query: 177 I----YGLFDEAVEENVVESHISKLRKKL 201
           +    YG      ++  ++ H+S LR+KL
Sbjct: 180 VWQQSYG------DDQTIDVHLSWLRRKL 202


>gi|237803881|ref|ZP_04591466.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331025861|gb|EGI05917.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 226

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 17/195 (8%)

Query: 36  EWLQSSA---------REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           +W Q  A         R D+  ++  L G  G +++E   ++RA   VP++ ++    LQ
Sbjct: 28  DWTQHGADGLHLALENRYDLIVLDVMLPGIDGWQIIE---VLRARQDVPVLFLTARDQLQ 84

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQG 144
             +   + G DD + KP    E+L R+  I RR  V   +      + +    R    Q 
Sbjct: 85  DRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVVREADHFHLADLELDLLRRRVTRQQ 144

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRN 203
           +V  L  +E  +L  L+   G  +++ QI S ++ + FD   + NVV+  I +LR K+  
Sbjct: 145 QVIVLTNKEFALLHLLLRREGDVMSRAQIASEVWDMNFDS--DTNVVDVAIKRLRSKIDL 202

Query: 204 KLGFDPVDSKRFLGY 218
                 + + R +GY
Sbjct: 203 PYPVKLIHTVRGIGY 217


>gi|229096516|ref|ZP_04227487.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229102609|ref|ZP_04233313.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|229115490|ref|ZP_04244896.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228667903|gb|EEL23339.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228680836|gb|EEL35009.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228686722|gb|EEL40629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 18/118 (15%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPI-------RVFSDGRDPEVQ 143
           G DD + KP    E+ AR+ ++ RR++V   +  T   GP        R++ D       
Sbjct: 98  GADDYITKPFSPVELTARIQSLLRRIEVHKEKTNTITSGPFSLNIIEERLYRD------- 150

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           G++  L   E  IL+YLM    K V++ +I + I+G  +   E  VV+ ++ +LR+K+
Sbjct: 151 GQLVDLTPTEYMILQYLMNQSSKPVSRDEILNMIWGT-NYVGETKVVDVNMRRLRQKI 207


>gi|255655801|ref|ZP_05401210.1| two-component response regulator [Clostridium difficile QCD-23m63]
          Length = 232

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 19/163 (11%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + IR +  QV +I ++        ++ F SG DD + KP   +E+L RV+A+ RR+
Sbjct: 63  IEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALIRRV 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V ++   + P  +  D R     G+   L   E  I++YL++N  + +++ QI 
Sbjct: 123 AKDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQIL 182

Query: 175 SAIYG---LFD-EAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             ++G   L+D + V+ N+         +++RNK+  DP   K
Sbjct: 183 DEVWGTNYLYDFKIVDVNI---------RRIRNKIEDDPSKPK 216


>gi|190576178|ref|YP_001974023.1| putative two-component system response regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014100|emb|CAQ47739.1| putative two-component system response regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 219

 Score = 51.6 bits (122), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 6/148 (4%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132
           P++ ++        L  FD+G DD + KP    E++ R+ A+ RR    ++ R   GP++
Sbjct: 74  PVLVLTARGRWHDKLAGFDAGADDYLTKPFQADELVLRLRALIRRSHGHASPRLHCGPLQ 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  +    E+ G+   L  +E R+L Y + + G+ + + ++   +   FD   + +   +
Sbjct: 134 LDVNAGRFELDGQALSLSPQEFRLLSYFIHHSGQVIGRDRLGEQV---FDGGHDPD--SN 188

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  L  ++R KLG D + + R  G+ +
Sbjct: 189 ALDVLLGRVRRKLGIDLIQTVRGQGWRL 216


>gi|332290136|ref|YP_004420988.1| DNA-binding transcriptional regulator BasR [Gallibacterium anatis
           UMN179]
 gi|330433032|gb|AEC18091.1| DNA-binding transcriptional regulator BasR [Gallibacterium anatis
           UMN179]
          Length = 220

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 10/151 (6%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P+I ++    L + L   D G DD + KP    E+LAR+    R+ +  ++ AE     +
Sbjct: 74  PIIILTARDDLPSRLQGLDGGADDYIIKPFDMAELLARIRVALRK-QSGHHTAEIRYGNL 132

Query: 134 FSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
             + +  +VQ     E   L  +E  IL+ L+ + G   +++ +   IYG + E VE N 
Sbjct: 133 LLNLKTYQVQNLTTQETQQLTNKEFAILQTLLQHPGVIYSRSDLEDKIYG-WGEEVESNA 191

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  I  LRK    KLG + + + R +G++I
Sbjct: 192 IDFLIHALRK----KLGKEAIKNIRGVGWTI 218


>gi|325263328|ref|ZP_08130063.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324031721|gb|EGB93001.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 231

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 74/153 (48%), Gaps = 1/153 (0%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125
           +R  S+VP+I ++        +   + G DD + KP     + ARV  ++ RL+  +   
Sbjct: 73  VRLTSRVPVIMLTANDMEIDEVRGIEMGADDYITKPFSLMVLRARVERLFSRLENETGGS 132

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G      D ++ EV G+   L R E+++L   +++ G+ + +  +   I+    + +
Sbjct: 133 YQKGGYSFVFDRQEFEVLGKQIELSRTEQKLLRMFISHPGQTLTREILNEGIWQEGSDYI 192

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +EN +   + +LRKKL+      P+ +   +GY
Sbjct: 193 DENALSVAVGRLRKKLQLNGKESPIRTVYGIGY 225


>gi|319784552|ref|YP_004144028.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170440|gb|ADV13978.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 241

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 13/157 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           +  P++ +S    +   +    +G DD + KP    E+LARV  + RR   S   AET  
Sbjct: 88  NTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRR--ASAKEAETVY 145

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             G + +               L  RE R+LEYLM + G+ V +T +   ++   FD   
Sbjct: 146 RVGDLELDRLSHSVRRASREITLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP-- 203

Query: 186 EENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           + NV++ H+S+LR K+    GFD   + + R  GY +
Sbjct: 204 QTNVIDVHVSRLRGKIEK--GFDKPILHTVRGAGYML 238


>gi|309812765|ref|ZP_07706504.1| response regulator MprA [Dermacoccus sp. Ellin185]
 gi|308433282|gb|EFP57175.1| response regulator MprA [Dermacoccus sp. Ellin185]
          Length = 209

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 10/154 (6%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           +P++ ++   +++  +    +G DD V KP    E++ARV A+ RR  V     ET    
Sbjct: 56  LPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEEVVARVRALLRR-SVQLAEEETSLLT 114

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +  D  +    G    L   E  +L +LM N  + ++K QI   ++  +D   + 
Sbjct: 115 VGDLTLDEDSHEVMRAGTEINLTATEFELLRFLMRNPKRVLSKAQILDRVWH-YDFGGQA 173

Query: 188 NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           NVVE +IS LRKK+    G +P + + R  GY +
Sbjct: 174 NVVELYISYLRKKI--DAGREPMIHTMRGAGYVL 205


>gi|294499355|ref|YP_003563055.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349292|gb|ADE69621.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 227

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 8/147 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IRA   +P+I +S        +     G DD + KP    E++ARV A   R +
Sbjct: 61  FEVCKQIRAAKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ------GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +++ E   IR+     D   +       EVF    +E  +L++++++  + ++K  +F
Sbjct: 121 RLSDKQEKRMIRIHGLAIDTLARRVFVNDKEVF-FTAKEFDLLKFIVSHPNQVLSKEHLF 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             I+G FD + + + V  HI KLR+KL
Sbjct: 180 EKIWG-FDSSGDISTVTVHIRKLREKL 205


>gi|317130194|ref|YP_004096476.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475142|gb|ADU31745.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 231

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 12/169 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    VP+I I+        +   + G DD V KP   +E+LAR+ A+ RR   
Sbjct: 65  EVCREIRKDRNVPVIMITGKGESYDKIKGLELGADDYVVKPFDPKEVLARMKAVMRRTNP 124

Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                E          IR ++  R+   + E+  LP +E  +L +L++++     + Q+ 
Sbjct: 125 YFGTNEEIALFGLKINIREYTLLRE---EKEIV-LPPKELELLFFLISHKNNVFTRQQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++G +D   +   ++ HI ++R+K+    G   + + R +GY  + N
Sbjct: 181 DEVWG-YDYEGDPRTIDVHIKRIREKIGEGSGEWSLKTIRGVGYKFEVN 228


>gi|260467116|ref|ZP_05813295.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259029128|gb|EEW30425.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 239

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE  ++L + +RA   VP++ ++      + +   ++G DD + KP   RE++ R+  I 
Sbjct: 73  GESGVDLTKSLRAEKNVPILMLTALSETDSRISGLEAGADDYLPKPFDPRELILRINNIL 132

Query: 117 RR-LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR    +  + E    GP       R+ +  GE   L  RE+ IL    A  G+ + + +
Sbjct: 133 RRGGPATTPKVEQLVFGPYTFQIARRELKRGGEALKLTDREQEILAIFAARAGETIPRHE 192

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +        D  V E  ++  I++LR+K+
Sbjct: 193 LVGD-----DSEVGERTIDVQINRLRRKI 216


>gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 4/142 (2%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IRA     P++ ++       T+   D+G DD V KP    E+LARV A+ RR 
Sbjct: 61  LEVARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR- 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S      G +R+ +D R   +  +   L  +E  +L  L+ + GK V + QI   ++ 
Sbjct: 120 GTSETPVVQG-VRIDADSRRAWMGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWD 178

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             +       ++ HIS LR+KL
Sbjct: 179 -TNWWGSTKTLDMHISWLRRKL 199


>gi|229003269|ref|ZP_04161100.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
 gi|228757987|gb|EEM07201.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
          Length = 237

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + +P++ ++        +     G DD + KP    E++AR+ A+ RR  
Sbjct: 63  IEVCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122

Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  SN   +   +  F       +     V G+   L  +E  +L++  +N  +   KTQ
Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +F  ++   +   ++N V  HI KLRKK+
Sbjct: 183 LFRNVWD-SNYIEDDNTVMVHIRKLRKKI 210


>gi|182680347|ref|YP_001834493.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636230|gb|ACB97004.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 277

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130
            P++ +S   S+   +    +G DD + KP    E+ ARV A+ RR       A    G 
Sbjct: 127 TPVLVVSALGSVDEKIRGLKAGGDDYLTKPFAMGELAARVEALLRRPAAEARSAILRVGS 186

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +    R       +  L  RE ++LEYLM   G+ V +  +   ++  ++   + N+V
Sbjct: 187 LEMDLIERTVRRNERLLDLLPREFKLLEYLMRRPGQTVTRAMLLEDVWN-YNFLPQTNLV 245

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + HI KLRKK+        ++S R  G+ ++
Sbjct: 246 DVHIGKLRKKIDQPGEVQMIESVRGAGFRLN 276


>gi|169829942|ref|YP_001700100.1| transcriptional regulatory protein cutR [Lysinibacillus sphaericus
           C3-41]
 gi|168994430|gb|ACA41970.1| Transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Lysinibacillus sphaericus C3-41]
          Length = 230

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 7/170 (4%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G +VLE  R+   +  V ++ +S   ++   +   D G +D + KP   +E+ AR+  + 
Sbjct: 59  GIEVLEQIRV--QNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLL 116

Query: 117 RRLKVSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR   S   A      I + S  +   V GE+  + ++E  ILEYLM ++ K ++  ++ 
Sbjct: 117 RR-SFSQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELI 175

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             ++   +  +  N ++ HI  LRKK+ + LG  + + + R  GY I  N
Sbjct: 176 EHVWD-SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITEN 224


>gi|162450321|ref|YP_001612688.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161160903|emb|CAN92208.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 228

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 12/165 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S +P++ ++        +   + G DD + KP   RE+LAR+ A+ RR  
Sbjct: 62  IEVVRRIRQKSSMPILMLTARGDEADRVVGLEIGADDYIAKPFSPRELLARLRAVLRRAT 121

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  R   G I +   GR   V G+   L   E  IL  L    G+ VA+  +     
Sbjct: 122 PDAAGERIVAGDIAIDVPGRVVTVSGKPTDLTGIEFDILVALARRAGRVVAREALLEE-A 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
           G  D  V    V+ HIS LR+KL +    DP     + + R +GY
Sbjct: 181 GRGDVNVGGRTVDVHISHLRQKLSD----DPRSPRLIKTVRGVGY 221


>gi|187928825|ref|YP_001899312.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725715|gb|ACD26880.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 228

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 5/156 (3%)

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRA 126
           A S VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  +++  +R 
Sbjct: 69  AESAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGTVQMGLDRI 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           + G + +    R     G    L  +E  +LE L   RG+ + ++ I S ++ + FD   
Sbjct: 129 QVGDLVLDLSRRRASRGGRRIALTSKEFALLELLARRRGEVLPRSLIASQVWDMNFDS-- 186

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 187 DSNVIDVAIRRLRAKIDDDFDAKLIQTVRGMGYVLE 222


>gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 406

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 10/165 (6%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA S  VP++ ++   +++  +    +G DD V KP    E++AR+  + RR 
Sbjct: 218 LEVLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRA 277

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +   R   G + +  + R+ +  G+   L   E  +L + M N  + ++K QI 
Sbjct: 278 ARTTEALQGARLVVGDLTMDEESREVQRAGQPVHLTATEFELLRFFMRNPRRVLSKAQIL 337

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
             ++  +D   + NVVE ++S LRKK+    G  P + + R  GY
Sbjct: 338 DRVWN-YDFGGQANVVELYVSYLRKKI--DAGRPPMIHTMRGAGY 379


>gi|75764446|ref|ZP_00743942.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488065|gb|EAO51785.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 229

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 76/153 (49%), Gaps = 2/153 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 77  LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 136

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G +D   
Sbjct: 137 IQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG-YDFEG 195

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            E  ++ HI++LR+K + +     + + R LGY
Sbjct: 196 NERTLDVHINRLREKFQEEQSKFSIKTIRGLGY 228


>gi|330964376|gb|EGH64636.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 229

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 17/195 (8%)

Query: 36  EWLQSSA---------REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           +W Q  A         R D+  ++  L G  G +++E   ++RA   VP++ ++    LQ
Sbjct: 28  DWTQHGADGLHLALENRYDLIVLDVMLPGIDGWQIIE---VLRARQNVPVLFLTARDQLQ 84

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQG 144
             +   + G DD + KP    E+L R+  I RR  V   +      + +    R    Q 
Sbjct: 85  DRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVVREADHFHLADLELDLLRRRVTRQQ 144

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRN 203
           +V  L  +E  +L  L+   G  +++ QI S ++ + FD   + NVV+  I +LR K+  
Sbjct: 145 QVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWDMNFDS--DTNVVDVAIKRLRSKVDL 202

Query: 204 KLGFDPVDSKRFLGY 218
                 + + R +GY
Sbjct: 203 PYPVKLIHTVRGIGY 217


>gi|330940315|gb|EGH43425.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 230

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 11/153 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NN 124
           R  S VP++ +S   S    +   D+G +D V KP   +E LAR+ A+ R+   S   ++
Sbjct: 71  REWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASGSEKPDS 130

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E GP+ V    R   + G+   L R+E  +L  L  + G+ + + Q+   I+G     
Sbjct: 131 ALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG----- 185

Query: 185 VEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
              +  +SH  ++    LR KL  DP  + RF+
Sbjct: 186 -PTHTEDSHYLRIVVGHLRQKLADDPT-APRFI 216


>gi|291062157|gb|ADD73560.1| two-component heavy metal response regulator [Achromobacter sp.
           AO22]
          Length = 230

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 65  RIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           RI+R    A  QVP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  +R +   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + FD   + NV++  I +LR K+ +      + + R +GY++D
Sbjct: 181 DMNFDS--DSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGYTLD 222


>gi|302874727|ref|YP_003843360.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690659|ref|ZP_07633105.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577584|gb|ADL51596.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 234

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 32/203 (15%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV--------------LELPRIIRA 69
           V L  +N LE EE+   +A +    IEA  I K EK               +E+ + IR 
Sbjct: 16  VELIKYN-LEAEEYKVLTAHD---GIEAGKIAKKEKPSLILLDLMLPGISGMEVCKKIRR 71

Query: 70  H---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
               S++P+I ++        +   + G DD + KP   RE+LARV A+ RR   + VS 
Sbjct: 72  DDEISEIPIIMLTAKSDELDKILGLELGADDYITKPFSIRELLARVKAVLRRTNTVAVST 131

Query: 124 NRAETGPIRV-FS--DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           N +  G + + FS  + R  +++     L  +E  +L  L+ NRGK + +  +   I+G 
Sbjct: 132 N-SRFGELTIDFSKYEVRKNDIK---VDLTLKEFELLNILVKNRGKVLTRDVLLDKIWG- 186

Query: 181 FDEAVEENVVESHISKLRKKLRN 203
           ++   E   V+ HI  LRKK+ +
Sbjct: 187 YEYIGETRTVDVHIRHLRKKIED 209


>gi|238790018|ref|ZP_04633796.1| Two-component response regulator [Yersinia frederiksenii ATCC
           33641]
 gi|238721831|gb|EEQ13493.1| Two-component response regulator [Yersinia frederiksenii ATCC
           33641]
          Length = 219

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 12/154 (7%)

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R IR H+ Q+P++ +S        +   + G DD ++KP    E+ AR+  I RR     
Sbjct: 48  REIRKHNWQIPIVFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIARRCLRQA 107

Query: 124 NRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +E       G + V  +        +   L  RE  IL YL  ++ + V +  +F A+
Sbjct: 108 PLSEEDAGFPFGDLTVIPNELCATRGEQRLELSLREVNILRYLYQHKNRVVTRDMLFDAV 167

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           +G +D   +   ++ HISKLRK +      DPV+
Sbjct: 168 WG-YDHLPQSRTLDQHISKLRKTIE----LDPVN 196


>gi|255284211|ref|ZP_05348766.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM
           14469]
 gi|255265236|gb|EET58441.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM
           14469]
          Length = 223

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           R +  +P++ +S    L +    F  G+DD + KP+   E+L RV A+ RR  +   R  
Sbjct: 69  RVNRHIPILFMSAKDDLPSKQKGFQIGIDDYMVKPLELDELLLRVRALLRRANIETRRKL 128

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           E G + +  D       GE  P+  RE  IL  L++   K  ++ Q+    +G+ D    
Sbjct: 129 EVGNLELDGDAMTAAAGGEEIPVTTREFNILYKLLSYPNKTFSRAQLMDEFWGV-DSDTS 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              V+ +I+KLR K     GF+ + + R LGY
Sbjct: 188 LRAVDVYITKLRDKFSGCNGFE-IKTVRGLGY 218


>gi|171915205|ref|ZP_02930675.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Verrucomicrobium spinosum DSM 4136]
          Length = 235

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R  ++ P++ +S        +   ++G DD V KP    E+ AR+ AI RR K
Sbjct: 69  LEVLKRLREWTETPVLVLSVRDQEAIKVAALENGADDYVTKPFSTAELAARLGAIQRRRK 128

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                + E G + +    R+ ++ G    L   E  +L+ L  N G+ + + QI   ++G
Sbjct: 129 TPEEPSLELGKLFLDLAAREVKLAGAELKLTPIEYNLLKLLARNLGRVITQKQILKDVWG 188

Query: 180 LFDEAVEE-NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               A E+   +  +++ LRKKL +  G   + ++  +GY +
Sbjct: 189 --PNATEQAQYLRVYVAHLRKKLGDAAGVQ-IRNEPGIGYRM 227


>gi|73749245|ref|YP_308484.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|73660961|emb|CAI83568.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
          Length = 228

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 10/160 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S+ P+I ++        +     G DD + KP    E+LARV AI RRL+ 
Sbjct: 65  EVLRRIRLFSETPVIVLTVRSDEVDIVKALSLGADDYLVKPFRQMELLARVKAISRRLRP 124

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N   E GP R          + E+  L   E +IL +LM + G+ V+   +   ++G
Sbjct: 125 PEVNLEIECGPFRFGRSITQLYKKEEIIRLTNIEGQILYHLMRSNGRCVSNEILAQKVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              E V E  +  +I  LR+K+ +    DP   K  L  +
Sbjct: 185 ---EKVYER-IRVNIRHLREKIED----DPSHPKYLLNVA 216


>gi|323466878|gb|ADX70565.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus helveticus H10]
          Length = 240

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 17/175 (9%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR+
Sbjct: 64  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123

Query: 120 KV-------SNNRAE----TGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKR 167
            +        NN  E    T  +++  D R+     + V  L  +E  +L Y MA + K+
Sbjct: 124 MMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQPVVDLTPKEFDLL-YTMAQKPKQ 182

Query: 168 V-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           V ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 183 VFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKL-EKVGAKVIQTVWGVGYKFD 235


>gi|228939121|ref|ZP_04101716.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228820544|gb|EEM66574.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939698|gb|AEA15594.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 234

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ +++
Sbjct: 77  LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 136

Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
            + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G +D   
Sbjct: 137 IQVGNVLLNRKTFEVTSGEQTVMLPLKEFELLFTLGSKSGRTCSREQLIEEIWG-YDFEG 195

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E  ++ HI++LR+K + +     + + R LGY ++
Sbjct: 196 NERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLE 231


>gi|229133751|ref|ZP_04262577.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228649786|gb|EEL05795.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 215

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 103/214 (48%), Gaps = 28/214 (13%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAH 70
           K+G+  L   DG           EE LQ    E +  AI  +++ K   +  + + I+ +
Sbjct: 22  KEGFEVLLAKDG-----------EEALQIFYDEKIDLAILDWMMPKSSGIT-VCQEIKKN 69

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127
           S V ++ ++     +  L    SG D+ V KP H   ++ R   + +    ++V + + +
Sbjct: 70  SSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRAKKLVQHEDVIQVQDLKID 129

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
               +V+ + ++ ++        + E ++++  + ++G  + + ++   ++G FD   EE
Sbjct: 130 FTKNKVYKNEKELDI-------TKTELQLIKCFLNHKGTILTRKKLLDIVWG-FDYFGEE 181

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V++H+ +LRK    K+G + + + R LGYS++
Sbjct: 182 RTVDTHVRRLRK----KIGENIIKTHRGLGYSLE 211


>gi|182438523|ref|YP_001826242.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326779170|ref|ZP_08238435.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178467039|dbj|BAG21559.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326659503|gb|EGE44349.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 242

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 12/145 (8%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +++R+ + VP+I  +        +   + G DD + KP     + AR+AA+ RR + +  
Sbjct: 65  KMLRSITDVPVIIATARDDESEIVRLLNDGADDYLTKPFSVEHLSARMAAVLRRSRAAGG 124

Query: 125 RAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             E  P RV   G        R  E+ G    L RRE  +L +L    G  VA+ ++ + 
Sbjct: 125 --EAPPPRVIRVGGLSIDPLRRSAELDGAELDLTRREFDLLTFLAGRPGVVVARKELLAE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201
           ++       ++  ++ H+S LR+KL
Sbjct: 183 VWQ--QSYGDDQTIDVHLSWLRRKL 205


>gi|167561696|ref|ZP_02354612.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis EO147]
 gi|167568932|ref|ZP_02361806.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis C6786]
          Length = 250

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 25/173 (14%)

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +RA +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 63  LDVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 121

Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q
Sbjct: 122 -----GAGGGPTVVRHGSLSFDQVGRIACANDRVLDLSARELGLLEVLLQRIGRLVSKEQ 176

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
           +   +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 177 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 222


>gi|124024341|ref|YP_001018648.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964627|gb|ABM79383.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 248

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 26/165 (15%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR        
Sbjct: 74  LRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKEHVAG 133

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++V+  R +T   +VF       + G  F L       LE L++  G+  ++ +
Sbjct: 134 IPNSGVIQVAELRVDTNKRQVFRGDERIRLTGMEFSL-------LELLVSRSGEPFSRGE 186

Query: 173 IFSAIYGLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           I   ++G   E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 187 ILKEVWGYTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 227


>gi|117618843|ref|YP_855862.1| two-component response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560250|gb|ABK37198.1| two-component response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 242

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IRA   +P+I ++        L     G DD V KP +  E++ARV A+ RR + +    
Sbjct: 79  IRARGDMPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRSQAAKQAT 138

Query: 127 ----ETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 GP ++  +  +  +    + ++  L   E ++L  LM    +  ++ ++ +  +
Sbjct: 139 ARVLRVGPFQIDLESHEASICRDERQQMLDLTLTEFKLLASLMRTPKRVFSRAELLT--H 196

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK 204
            L +   +E  V+SHISKLRKKL  +
Sbjct: 197 CLPEGDTQERTVDSHISKLRKKLEAQ 222


>gi|88799154|ref|ZP_01114734.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
           sp. MED297]
 gi|88778137|gb|EAR09332.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
           sp. MED297]
          Length = 240

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 9/136 (6%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130
           +++P+I ++        +   ++G DD + KP   RE++AR+ A+ RR   S       P
Sbjct: 81  AEIPIIMLTAKGEEDHKITGLEAGADDYITKPFSPRELVARLKAVLRR---STPAGIDEP 137

Query: 131 IRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
           I +     DP        G+   +   E R+L++ M++  +   + Q+   ++G  +  V
Sbjct: 138 IEINGLKLDPNSHRITAHGDELSMGPTEFRLLQFFMSHAERAYTRGQLLDQVWG-GNVYV 196

Query: 186 EENVVESHISKLRKKL 201
           +E  V+ HI +LRK L
Sbjct: 197 DERTVDVHIRRLRKGL 212


>gi|325524664|gb|EGD02663.1| phosphate regulon two-component regulatory system response
           regulator protein [Burkholderia sp. TJI49]
          Length = 233

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 76  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R +    RV +     E++ ++ P    E R+L + M +  +  ++TQ+   ++G  D
Sbjct: 136 GLRLDPATHRVAAHTDGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 190

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 191 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|313620820|gb|EFR92044.1| transcriptional regulatory protein WalR [Listeria innocua FSL
           S4-378]
          Length = 199

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 15/165 (9%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83
            + +G  +LE  E +Q     D+  ++  L G+    +E+ R +R    +P+I ++   S
Sbjct: 32  CAYDGDEALELVEEVQP----DLILLDIMLPGRDG--IEVCREVRKKYDMPIIMVTAKDS 85

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVSNNRAETGPIRVF 134
               +   + G DD V KP  +RE++ARV A  RR          +  N+  E G + + 
Sbjct: 86  EIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQVSSNAAEEEENSELEIGSLIIH 145

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            D      +GE   L  RE  +L YL  + G+ + +  +   ++G
Sbjct: 146 PDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREHLLQTVWG 190


>gi|311696338|gb|ADP99211.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 233

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 19/232 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDG--VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           VLI+D   ++D Y A F   G  VS  G  +  ++   QS    D++ I+  L  + E  
Sbjct: 6   VLIEDEPAIRDNYRAAFERRGYRVSAHGDRASAWQVLRQSLP--DLAIIDVGLGDEPEGG 63

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
             L + +R+ SQ +P+I ++   S   ++     G DD V K +    +LARV A+ RR 
Sbjct: 64  FALCQDLRSLSQTLPIIFLTARDSDIDSVHGLRLGADDYVTKDMSLDHLLARVTALLRRA 123

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 L+  +   E G + +  D            L   E  +L  L+ + G   ++ Q
Sbjct: 124 DAWAEALQKPDEVLERGKLSLNVDRMTVAWDETPIDLTVTEFWMLHSLVQHPGHVRSREQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +  A   + D    +N V SHI ++R+K +     FD + +   +GY   WN
Sbjct: 184 LMEAASTVLD----DNTVTSHIKRIRRKFQQIDATFDGIQTAYGMGYR--WN 229


>gi|308067994|ref|YP_003869599.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305857273|gb|ADM69061.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 235

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 93/231 (40%), Gaps = 34/231 (14%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           +AL K+GY      DG           EE L +  R     +   L+      +E+ R I
Sbjct: 20  KALTKEGYSLTTAYDG-----------EEGLLAFKRHTYDLVLVDLMMPKVDGMEVIRRI 68

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R HS VP++ +S   S          G DD V KP    E+ AR+ +  RR      + +
Sbjct: 69  RTHSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTTYARQQQ 128

Query: 128 T-----------GPIRVFSDG-----RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       G +R+  D       + E+Q     L  +E  IL+  +AN  +   K 
Sbjct: 129 QEEQPQAQILTYGSLRIDFDHFIVIRNENEIQ-----LTAKESDILKLFVANPNRVFTKA 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q++  I+   D   +ENV+  HI +LR+K+  K    PV  K   G    W
Sbjct: 184 QLYGFIWK-DDYMGDENVINVHIRRLREKI-EKDPSHPVHIKTLWGIGYKW 232


>gi|262375479|ref|ZP_06068712.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262309733|gb|EEY90863.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 221

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 7/161 (4%)

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           E+ + +R+  Q  P+I I+   S+   ++  D G +D + KP    E+ ARV A + ++ 
Sbjct: 61  EILKSLRSQQQDTPVIFITAKDSIDDRVEGLDLGANDYLVKPFSLEELSARVRAQLRQKQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  N+      + + +  +    +G+   L  +E +IL  LM      V + Q+  ++Y 
Sbjct: 121 QTPNHILLWQDLSLDTQAKTLTKEGQAVNLTAKEFQILYKLMQQPEHIVTREQLEESLYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE +E N +E  I +LRK    K+G   + + R LGY +
Sbjct: 181 WGDE-IESNAIEVFIYQLRK----KIGSQMIKTIRGLGYRM 216


>gi|261408579|ref|YP_003244820.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285042|gb|ACX67013.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 235

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  +  P++ +S   S    +     G DD + KP    E++ARV A  RR+ 
Sbjct: 64  IEVCRELRTLTSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMV 123

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +A T      G + +    R          L  +E  +L +L +N  +   KTQ+ 
Sbjct: 124 DPKLQATTQLLLRFGTLSIDKGARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201
             ++G +   VE+N +  ++ +LR+KL
Sbjct: 184 DQVWG-YSAYVEDNTITVYVRRLREKL 209


>gi|157150931|ref|YP_001450784.1| response regulator Rr1 [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|262283082|ref|ZP_06060849.1| response regulator Rr1 [Streptococcus sp. 2_1_36FAA]
 gi|157075725|gb|ABV10408.1| response regulator Rr1 [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|262261334|gb|EEY80033.1| response regulator Rr1 [Streptococcus sp. 2_1_36FAA]
          Length = 228

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 4/157 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           IR  S VP++ +S        +   + G DD V KP  +   LA+V  + RR        
Sbjct: 67  IRKISTVPIMFLSSRDQAMDIVMAINMGGDDYVTKPFDNNVFLAKVQGLLRRSYEFGTDQ 126

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N  E   + +     D    G+V  L + E +IL  L    G  V +  +   ++   D 
Sbjct: 127 NLLEHRGVILNLKSMDLMYNGQVITLTKNEFQILRVLFERAGSIVEREDLMKELWN-SDF 185

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++N +  ++++LRKKL      + +++K+ +GY +
Sbjct: 186 FIDDNTLSVNVARLRKKLEETGLKNFIETKKGIGYGL 222


>gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 222

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 4/142 (2%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IRA     P++ ++       T+   D+G DD V KP    E+LARV A+ RR 
Sbjct: 61  LEVARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      +   +R+ +D R   +  +   L  +E  +L  L+ + GK V + QI   ++ 
Sbjct: 121 QSETPVVQG--VRIDADSRRAWLGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWD 178

Query: 180 LFDEAVEENVVESHISKLRKKL 201
             +       ++ HIS LR+KL
Sbjct: 179 -TNWWGSTKTLDMHISWLRRKL 199


>gi|320008161|gb|ADW03011.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 230

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 11/161 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S +P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR     +  
Sbjct: 69  IRKRSAIPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVARRRTAGEDTG 128

Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            T       G + +    R   V G+   L R+E  +L  L    G    + QI S ++ 
Sbjct: 129 PTPLAALRIGQVHIELPTRRVSVDGQEVQLTRKEFDLLALLAQRPGVVFRREQIISEVWR 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E      +E H++ LR KLR       V++ R +GY +
Sbjct: 189 TSWEGTGRT-LEVHVASLRSKLRLPA---LVETVRGVGYRL 225


>gi|257878630|ref|ZP_05658283.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257881295|ref|ZP_05660948.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257885571|ref|ZP_05665224.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257888114|ref|ZP_05667767.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257890512|ref|ZP_05670165.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257893088|ref|ZP_05672741.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257899254|ref|ZP_05678907.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260558210|ref|ZP_05830406.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261206900|ref|ZP_05921589.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289567406|ref|ZP_06447772.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|314940148|ref|ZP_07847328.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04]
 gi|314943020|ref|ZP_07849824.1| putative regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|314948138|ref|ZP_07851534.1| putative regulatory protein VanR [Enterococcus faecium TX0082]
 gi|314953448|ref|ZP_07856366.1| putative regulatory protein VanR [Enterococcus faecium TX0133A]
 gi|314993812|ref|ZP_07859149.1| putative regulatory protein VanR [Enterococcus faecium TX0133B]
 gi|314998162|ref|ZP_07863044.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|257812858|gb|EEV41616.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257816953|gb|EEV44281.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257821427|gb|EEV48557.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257824168|gb|EEV51100.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257826872|gb|EEV53498.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257829467|gb|EEV56074.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257837166|gb|EEV62240.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260075384|gb|EEW63690.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260078528|gb|EEW66230.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289160802|gb|EFD08736.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|313587874|gb|EFR66719.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|313591735|gb|EFR70580.1| putative regulatory protein VanR [Enterococcus faecium TX0133B]
 gi|313594551|gb|EFR73396.1| putative regulatory protein VanR [Enterococcus faecium TX0133A]
 gi|313598220|gb|EFR77065.1| putative regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|313640653|gb|EFS05233.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04]
 gi|313645392|gb|EFS09972.1| putative regulatory protein VanR [Enterococcus faecium TX0082]
          Length = 236

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 68  MQVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPE----VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
           ++++ ++ +   +      +D      + G+   L   E  IL YL+A+   RV +  +I
Sbjct: 128 MQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGIL-YLLASHPNRVFSADEI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
           F  ++   +  V    V  H+S LR K+    G + V    + +GY ID
Sbjct: 187 FERVWKQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 234


>gi|229513612|ref|ZP_04403076.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TMA 21]
 gi|229349489|gb|EEO14445.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TMA 21]
          Length = 228

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 14/120 (11%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-----SNNRAETGPIRVFSDGRDPEVQGE 145
            + G DD + KP   RE+LAR+ AI RR +      +++  E   I+V+   ++   QG+
Sbjct: 90  LELGADDYLPKPFSDRELLARIRAILRRTQSGLTPKNSDVIECQDIQVYPGKQEAYCQGQ 149

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
           +  L   E  +L + + + G  + K  +   + G     FD A     ++ H+S LRKKL
Sbjct: 150 LLELTTTEFALLTHFVQSPGATLTKEMLSIEVLGKHLAAFDRA-----IDMHVSNLRKKL 204


>gi|257791382|ref|YP_003181988.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257475279|gb|ACV55599.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 232

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 66/144 (45%), Gaps = 7/144 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S VP+I ++        +  F+ G DD V KP   RE++ARV A  RR   ++ 
Sbjct: 68  RELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRRATSNDV 127

Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             E GP       I +        + GE   L  +E  IL  LM ++ + VA   +F  +
Sbjct: 128 AREDGPGMLECCGIALDESAYTATLHGEALSLTPKEFAILACLMRDQSRPVASRDLFETV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G    A   N V  HI  LRKKL
Sbjct: 188 WGEIANAQSNNTVMVHIRHLRKKL 211


>gi|261345195|ref|ZP_05972839.1| QseB protein [Providencia rustigianii DSM 4541]
 gi|282566888|gb|EFB72423.1| QseB protein [Providencia rustigianii DSM 4541]
          Length = 219

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 12/137 (8%)

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133
           P++ ++   +L   +     G DD + KP    E+ AR+ A+ RR        +  P  +
Sbjct: 74  PVLILTARDALDQRVQGLQQGADDYLCKPFALMEVAARLQALIRR-----RSGQLSPTLI 128

Query: 134 FSD-GRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
             D   DP+      QG+   L  +E  +L   + N  K ++++ I   +Y  +DE V  
Sbjct: 129 HGDVEMDPQAMTVTCQGKPVQLKGKELALLSLFLHNPKKVLSRSLIEEKLYN-WDEEVSS 187

Query: 188 NVVESHISKLRKKLRNK 204
           N VE HI  LR+KL  K
Sbjct: 188 NSVEVHIHHLRRKLGAK 204


>gi|187933023|ref|YP_001887285.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum B str. Eklund 17B]
 gi|187721176|gb|ACD22397.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum B str. Eklund 17B]
          Length = 224

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 6/156 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----S 122
           IR  S+VP+I  S        +   + G DD + KP     I+A+V A+ RR       +
Sbjct: 67  IRKISKVPIIFASSANDNMNLIMAINMGADDFIAKPFDLNVIVAKVQALIRRTYSFQGQT 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N     G +    D        +   L + E +IL+ L+ N+ K V++  I + ++   D
Sbjct: 127 NILESNGAVLNLGDTT-LIYNNKKLELSKNEFKILQILLDNKNKTVSRDDIMTHLWN-SD 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             +++N +  ++++LR+KL +    + + +K+ +GY
Sbjct: 185 SFIDDNTLTVNVTRLRRKLDDINLKNFIKTKKGIGY 220


>gi|168177977|ref|ZP_02612641.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670984|gb|EDT82958.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 227

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 17/172 (9%)

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E   EL R I     +P+I ++    +   +   + G DD + KP + +E+L RV    R
Sbjct: 59  ESGFELCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIR 118

Query: 118 RLKVSNNRAE------TGPIRVFSDGR-----DPEVQGEVFPLPRRERRILEYLMANRGK 166
           R+     +++         ++V  +GR     D EV+     L  +E  +LE+ + NR  
Sbjct: 119 RVSKYKEKSDEEFIYINKFVKVNLEGRIVFKDDKEVK-----LKPQEYELLEFFVKNRNI 173

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             ++  + + ++G FD   E   V+ H+ +LR KL  +     +D+   +GY
Sbjct: 174 VFSREILLNKVWG-FDYEGEVRTVDVHVRRLRSKLDKENSASIIDTAFGIGY 224


>gi|160882790|ref|ZP_02063793.1| hypothetical protein BACOVA_00751 [Bacteroides ovatus ATCC 8483]
 gi|237720696|ref|ZP_04551177.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|260170259|ref|ZP_05756671.1| two-component system response regulator [Bacteroides sp. D2]
 gi|293373970|ref|ZP_06620311.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|298484159|ref|ZP_07002325.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|299145588|ref|ZP_07038656.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|315918622|ref|ZP_07914862.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156111814|gb|EDO13559.1| hypothetical protein BACOVA_00751 [Bacteroides ovatus ATCC 8483]
 gi|229449531|gb|EEO55322.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|292631046|gb|EFF49683.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|298269663|gb|EFI11258.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|298516079|gb|EFI39960.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|313692497|gb|EFS29332.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 225

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +LE  R+   H +  +I IS   SL+  +   + G DD + KP H  E+ AR+ +
Sbjct: 57  GSGLDLLE--RLKALHKRENVIIISAKDSLEDKVLGLELGADDYLPKPFHLVELNARIKS 114

Query: 115 IYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           + RR        ++  N R E    RVF + ++ E       L R+E  IL Y +   G+
Sbjct: 115 VIRRHQHDGEIDIRQGNVRIEPDKYRVFVNEQEVE-------LNRKEYDILLYFINRPGR 167

Query: 167 RVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203
            + K  +  +++G   D+    + + + I  LRKKL++
Sbjct: 168 LINKNTLAESVWGDHIDQVDNFDFIYAQIKNLRKKLKD 205


>gi|118479688|ref|YP_896839.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044910|ref|ZP_03112144.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866511|ref|YP_002751889.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|118418913|gb|ABK87332.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024398|gb|EDX63071.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225790658|gb|ACO30875.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 230

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119
           LE+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A I R  
Sbjct: 62  LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121

Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K S        I++     DP        G+   L  +E  IL+  + N+ +   K QI+
Sbjct: 122 KYSATETTEKMIQIGDLTIDPINFTVGKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203
           + I+   +   ++NV+  H+ +LR+K+ +
Sbjct: 182 TLIWN-EEYYGDDNVINVHMRRLREKIES 209


>gi|107023589|ref|YP_621916.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|105893778|gb|ABF76943.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
          Length = 282

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 24/170 (14%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+   +S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR    
Sbjct: 103 LKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR---- 158

Query: 123 NNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              A  GP  V          GR       V  L  RE  +LE L+   G+ V+K Q+  
Sbjct: 159 --GAGGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVD 216

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221
            +   + E V  N +E ++ +LRKK+      +P    + + R LGY ++
Sbjct: 217 HLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRISTVRGLGYCLE 259


>gi|83814704|ref|YP_445301.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Salinibacter ruber DSM 13855]
 gi|83756098|gb|ABC44211.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Salinibacter ruber DSM 13855]
          Length = 253

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 17/121 (14%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD----------GRDP 140
           FD G DD V KP   +E+ ARV A+  R +  +   +TG +  F +           RD 
Sbjct: 104 FDLGADDYVTKPFDAKELAARVEAVLSRSQ--SALPDTGDVFAFGNVSVHFPDETVTRDS 161

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           E  G    L   E  IL Y + +RG+ V++ Q+   ++G+  + +    ++ H++ LRKK
Sbjct: 162 EPVG----LTDLEFDILTYFIEHRGRTVSREQLLRDVWGISGD-ITTRTIDRHVASLRKK 216

Query: 201 L 201
           +
Sbjct: 217 I 217


>gi|319406904|emb|CBI80539.1| two-component response regulator [Bartonella sp. 1-1C]
          Length = 228

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   +    +G DD + KP    E+LARV  + RR   +   AET   
Sbjct: 72  KTPVLILSALGQVDDRVTGLRAGGDDYLTKPFAFSELLARVEVLRRR--KNPKEAETVYC 129

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            G + +       +  G+   L  RE R+LEYLM   G+ V +T +   ++   FD   +
Sbjct: 130 VGDLELDRLAHIVKRGGKNIILQPREFRLLEYLMRYSGQVVTRTMLLENVWDYHFDP--Q 187

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            NV++ HIS+LR K+        + + R  GY +
Sbjct: 188 TNVIDVHISRLRAKIEKDFDVPLLHTVRGAGYML 221


>gi|319653594|ref|ZP_08007693.1| winged helix family Two component transcriptional regulator
           [Bacillus sp. 2_A_57_CT2]
 gi|317394793|gb|EFV75532.1| winged helix family Two component transcriptional regulator
           [Bacillus sp. 2_A_57_CT2]
          Length = 224

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----S 122
           IR+ S+VP+I +S        +   + G DD + KP     +LA+++A+ RR        
Sbjct: 67  IRSVSKVPIIFLSSRNQNMDIIMAINMGGDDFIQKPFDLDILLAKISALIRRKYTYQEDE 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N R     +++       E  G+   L R E  +L+ +M N GK V++  +  A++   +
Sbjct: 127 NIRFIHRGLKLNVTNSTIEFNGQSNELSRNEFILLQLMMRNIGKIVSRDDLMQALWNE-E 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + V++N +  +++++R+K+      D + +++ LGY I+
Sbjct: 186 QFVDDNTLTVNVNRMRRKIAAIGLEDFIVTRKGLGYLIE 224


>gi|293376778|ref|ZP_06623000.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292644644|gb|EFF62732.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 224

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 3/130 (2%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149
           F  G DD + KPI   E+L R+ A+ RR ++ N R  T G +R+  D      + E+  L
Sbjct: 92  FIVGTDDYMTKPIDTEEMLLRIRALLRRSQIVNERKLTIGKVRLDYDALTVTRENEIQTL 151

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           P++E  +L  L++  G+   + Q+   I+G+  E   +  V  HI++LR K  N   F+ 
Sbjct: 152 PQKEFYLLYKLLSYPGRIFTRIQLMDEIWGMESETT-DTTVNVHINRLRNKFSNYPEFEL 210

Query: 210 VDSKRFLGYS 219
           +   R LGY 
Sbjct: 211 I-CVRGLGYK 219


>gi|226310130|ref|YP_002770024.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093078|dbj|BAH41520.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 232

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 81/163 (49%), Gaps = 10/163 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119
           R +R  S  P++ IS   S    +   ++G DD + KP  +  +LA++ +  RR      
Sbjct: 65  RQMRQESNCPILFISARESKMDQVMALENGADDYITKPFDYDVVLAKIRSQLRRAYGQYA 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      E   +++F +  +  +      L ++E  +LE LM    + V++ ++   ++
Sbjct: 125 PQEGERTVEVAGLKLFLERMELSMYETKIELSKKEALLLEALMNQHPRVVSRERLLEKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++ V+EN +  +I+++R KL++ LG +  V++ R  GY +
Sbjct: 185 D--EQFVDENTLNVYITRVRSKLKD-LGLEGAVETVRGSGYRL 224


>gi|217964346|ref|YP_002350024.1| ResD family transcriptional regulator [Listeria monocytogenes
           HCC23]
 gi|290893866|ref|ZP_06556844.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|217333616|gb|ACK39410.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           HCC23]
 gi|290556583|gb|EFD90119.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|307571088|emb|CAR84267.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 228

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR  
Sbjct: 60  MTICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 121 ----VSNNR--AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQI 173
                 NN    ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+
Sbjct: 120 SASPAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              ++G +    +E  V+ HI +LR+K+
Sbjct: 180 LEQVWG-YQFYGDERTVDVHIKRLRQKI 206


>gi|116628742|ref|YP_813914.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|238852956|ref|ZP_04643355.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282852390|ref|ZP_06261732.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300362620|ref|ZP_07058796.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|116094324|gb|ABJ59476.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|238834406|gb|EEQ26644.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282556132|gb|EFB61752.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300353611|gb|EFJ69483.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 235

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 9/151 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  
Sbjct: 62  LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121

Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++    E           + +  +    E  GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 LTQKATEDDEDKNITISNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 211


>gi|332188679|ref|ZP_08390394.1| response regulator [Sphingomonas sp. S17]
 gi|332011296|gb|EGI53386.1| response regulator [Sphingomonas sp. S17]
          Length = 222

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149
           F +G DD + KP    E++ R+ A+ RR    +  R   GP+   S     E+ G    L
Sbjct: 91  FKAGADDYLTKPFRVEELVMRLRALVRRAAGHAQPRLTCGPLSFDSQTGQFELDGLPLKL 150

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
              E R+L  LM  +   + + ++   +Y   D  V+ N +E  + +LRK    K+G D 
Sbjct: 151 TAFEWRVLSALMLRKEAVIPRLELLERVYE-GDADVDSNSLEVIVGRLRK----KIGADL 205

Query: 210 VDSKRFLGYSI 220
           +++ R +GY +
Sbjct: 206 IETVRGMGYRL 216


>gi|260102559|ref|ZP_05752796.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|260083634|gb|EEW67754.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
          Length = 234

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 17/175 (9%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR+
Sbjct: 58  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 117

Query: 120 KV-------SNNRAE----TGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKR 167
            +        NN  E    T  +++  D R+     + V  L  +E  +L Y MA + K+
Sbjct: 118 MMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLL-YTMAQKPKQ 176

Query: 168 V-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           V ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 177 VFSRDQLLDLVWG-YEYYGEERTVDAHIKKLRQKL-EKVGAKVIQTVWGVGYKFD 229


>gi|257792735|ref|YP_003183341.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|325831086|ref|ZP_08164410.1| putative transcriptional regulatory protein ResD [Eggerthella sp.
           HGA1]
 gi|257476632|gb|ACV56952.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|325487007|gb|EGC89453.1| putative transcriptional regulatory protein ResD [Eggerthella sp.
           HGA1]
          Length = 236

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 5/158 (3%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R H   P++ ++        L+ F++G DD V KP     + ARV A   R    + 
Sbjct: 76  RRLREHLTCPILFLTARVEDVDALEGFEAGADDYVLKPFSLAVLGARVKAHLARDNRQHV 135

Query: 125 RAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           RAE    G I +    R     G    L RRE  I+ +L  + G+   + +I   + G  
Sbjct: 136 RAEVRFDGDIAIDYRSRTVTAAGRPVELTRREFDIVAFLSKHPGQVFDRDRIHERVGGWE 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           +E+ +  VV  HI ++RKKL       DPV++   +GY
Sbjct: 196 NES-DSQVVTEHIRRIRKKLAAAGAEPDPVETVWGMGY 232


>gi|237799359|ref|ZP_04587820.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237805509|ref|ZP_04592213.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237806273|ref|ZP_04592977.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022215|gb|EGI02272.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331026616|gb|EGI06671.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331027387|gb|EGI07442.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 229

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 17/195 (8%)

Query: 36  EWLQSSA---------REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           +W Q  A         R D+  ++  L G  G +++E   ++RA   VP++ ++    LQ
Sbjct: 28  DWTQHGADGLHLALENRYDLIVLDVMLPGIDGWQIIE---VLRARQDVPVLFLTARDQLQ 84

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQG 144
             +   + G DD + KP    E+L R+  I RR  V   +      + +    R    Q 
Sbjct: 85  DRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVVREADHFHLADLELDLLRRRVTRQQ 144

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRN 203
           +V  L  +E  +L  L+   G  +++ QI S ++ + FD   + NVV+  I +LR K+  
Sbjct: 145 QVIVLTNKEFALLHLLLRREGDVMSRAQIASEVWDMNFDS--DTNVVDVAIKRLRSKIDL 202

Query: 204 KLGFDPVDSKRFLGY 218
                 + + R +GY
Sbjct: 203 PYPVKLIHTVRGIGY 217


>gi|254386964|ref|ZP_05002246.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194345791|gb|EDX26757.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 240

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 19/154 (12%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+IR  S VP++  +        +   ++G DD + KP    +++AR++A+ RR   S+ 
Sbjct: 65  RMIRGLSPVPVVVATARDDEAEIIRLLNAGADDYLVKPFSGGQLVARLSAVLRRTAGSHT 124

Query: 125 -RAETGP--------IRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKR 167
                GP        +R  S GR   DP      ++G      RRE  +L +L  + G+ 
Sbjct: 125 PEPGGGPWSAAPADLMRPVSVGRLTVDPGARTAVLEGRELRFTRREFDLLAFLAHHAGQV 184

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           V+K ++ S ++   +  V++  V+ H+S LR+KL
Sbjct: 185 VSKRRLLSEVW--REPYVDDQTVDVHLSALRRKL 216


>gi|254384692|ref|ZP_05000030.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343575|gb|EDX24541.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 235

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 28/161 (17%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTT--------LDFFDSGVDDVVNKPIHHREILARV 112
           L LP +  + +   L GI+D P +  T        +   + G DD + KP     + AR+
Sbjct: 59  LGLPDLDGSEALKMLRGITDVPVIIATARDDEAEIVRLLNDGADDYLTKPFSVEHLSARM 118

Query: 113 AAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANR 164
           AA+ RR + S   AE  P RV   G        R  E+ G V  L RRE  +L +L    
Sbjct: 119 AAVLRRAR-SAAGAEP-PSRVLRVGGLAIDPLRRQAELDGAVLDLTRREFDLLAFLAGRP 176

Query: 165 GKRVAKTQIFSAI----YGLFDEAVEENVVESHISKLRKKL 201
           G  VA+ ++ + +    YG      ++  ++ H+S LR+KL
Sbjct: 177 GVVVARRELLAEVWQQSYG------DDQTIDVHLSWLRRKL 211


>gi|157737533|ref|YP_001490216.1| two component system transcriptional regulatory protein [Arcobacter
           butzleri RM4018]
 gi|157699387|gb|ABV67547.1| two component system transcriptional regulatory protein [Arcobacter
           butzleri RM4018]
          Length = 228

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 5/144 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L + IR  S+VP+I ++     +  +   D G DD + KP    E+LAR+ A  RR+  
Sbjct: 64  DLIKQIREISKVPIIVLTARHDEKEIIAALDVGADDYITKPFSVNELLARIRANLRRIAN 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S NR     + +    RD  ++ E   L   E  +L+Y M +  K +   QI   +
Sbjct: 124 VEIESANRFICDELELDIVSRDIFLKKEKLKLTPIEYELLKYFMLHANKTLTHKQILQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKL 201
           +G   +  E   + ++++ LRKK+
Sbjct: 184 WGTAYQN-EMPYLRTYVNTLRKKI 206


>gi|126702215|gb|ABO26811.1| CpxR [Tatlockia micdadei]
          Length = 223

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 4/159 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ + IR H + P++ ++        +   + G DD + KP + RE++AR+ AI RR  K
Sbjct: 63  EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +   R       +  D   P   GEV  L   E  ILE L+ + G+  +K ++     G 
Sbjct: 123 IPAQRPIIEHQGILVDESLPN-HGEVLELTNAEFNILEMLIKSPGQAFSKEELTEYALGR 181

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
              A + + ++ HIS LR KL  N+ G   + + R  GY
Sbjct: 182 KYTAYDRS-IDVHISNLRNKLGDNEEGEPIIKTVRGFGY 219


>gi|194366764|ref|YP_002029374.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194349568|gb|ACF52691.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 237

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 6/163 (3%)

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           E+ R +RA   S+VP+I ++    L   +  F +G DD + KP    E+  R+ A+  R 
Sbjct: 61  EVLRRLRAEHASEVPVIMLTARDELPDKIAGFRAGADDYLTKPFALPELEVRLEALLLRA 120

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  N   R + G + +     + + +G+V  L    R++LE LM      V + Q+  A+
Sbjct: 121 QGRNPRKRLQVGDLVLDLATLEAQREGQVLHLYPACRKLLEVLMRASPGAVTRQQLEFAL 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  DE  + +++ SH+ +LR+ +    G   + +   +GY +
Sbjct: 181 WG--DEPPDGDLLRSHVYELRRSVDGPFGEKLIHTLPRVGYRL 221


>gi|57242734|ref|ZP_00370671.1| response regulator, putative [Campylobacter upsaliensis RM3195]
 gi|57016663|gb|EAL53447.1| response regulator, putative [Campylobacter upsaliensis RM3195]
          Length = 236

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 14/156 (8%)

Query: 69  AHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVAAIYRR--LKVSN 123
           A+ Q P I ++   SL TT D    F  G DD + KP    E+  RV A+ +R     + 
Sbjct: 86  ANKQTPCIFMT---SLNTTNDLKQGFSVGCDDYIKKPFELAELSLRVEALLKRSFFHKNE 142

Query: 124 NRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N  + G    FS       + + V  LP +E ++L  L+ N+   ++  +IF  ++  +D
Sbjct: 143 NYEDLGEGLKFSLKNQILYKDDKVLALPSKEIKLLTLLLQNKNNFLSVEEIFDKLWE-YD 201

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           E   E  + +++  LRK     LG D + ++R  GY
Sbjct: 202 EEPSELSLRAYVKNLRK----ILGKDKIINQRGRGY 233


>gi|315221748|ref|ZP_07863662.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315189134|gb|EFU22835.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 218

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + IR  SQVP++ ++      T L  F+  + D V KP     ++ R+  I+R   
Sbjct: 61  LDVLKEIRKTSQVPVMMLTALDDEYTQLVSFNHLISDYVTKPFSPLILMKRIENIFRS-T 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+ +    G +RV  D      Q E     ++E  I++ L   +   V + Q+ + I+G 
Sbjct: 120 VTESEIVIGDLRVSIDDCTVYWQEEKMSPTKKEYEIIQALAKRKNHLVTRDQLMNTIWGY 179

Query: 181 FDEAVEENVVESHISKLRKKL 201
            +  ++  V+++H+  +RKK+
Sbjct: 180 SE--LDSRVLDNHVKNIRKKI 198


>gi|303235017|ref|ZP_07321641.1| putative Response regulator protein GraR [Finegoldia magna
           BVS033A4]
 gi|302493872|gb|EFL53654.1| putative Response regulator protein GraR [Finegoldia magna
           BVS033A4]
          Length = 225

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR  + +P+I IS        +     G DD + KP +   ++ ++ A+ +R   +N   
Sbjct: 65  IRKATDIPIIFISSKSEDLDIIMGMQMGADDYITKPFNFDVLMVKINAVMKRYYGNNIIK 124

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E   + +F +    E       L + E  IL+ L   +G+ V + ++    +   D 
Sbjct: 125 SVLEFNEVMLFVNEFRLEFNDNEINLTKTEMLILKSLFEAKGEIVTREKLMDKCWQ-NDF 183

Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            +++N +  +I+++RKKL NKLG D  + +K++ GY ++
Sbjct: 184 FIDDNTLAVNINRIRKKL-NKLGLDDFLLTKKYSGYYLN 221


>gi|229016961|ref|ZP_04173882.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229027724|ref|ZP_04183908.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|229035338|ref|ZP_04189244.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|229160663|ref|ZP_04288656.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228622798|gb|EEK79631.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228727951|gb|EEL79021.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228733586|gb|EEL84386.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744321|gb|EEL94402.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 230

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 10/148 (6%)

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR +S VP+I ++       TL  F+ G DD V KP     +LAR     R  K +
Sbjct: 69  VCRRIRKNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAK---RLFKDT 125

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N + +         IR+    R   + G+       E  IL  LM ++ + +++ Q+ + 
Sbjct: 126 NQQVQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLSREQLITN 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204
           I+G +D   ++  + +H+  +R KL  K
Sbjct: 186 IWG-YDYDGDDKTLTAHMRNVRLKLGEK 212


>gi|229194660|ref|ZP_04321454.1| hypothetical protein bcere0001_2480 [Bacillus cereus m1293]
 gi|228588818|gb|EEK46842.1| hypothetical protein bcere0001_2480 [Bacillus cereus m1293]
          Length = 209

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 15/162 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  + VP + ++        +     G DD + KP    E++ARV A+ RR  
Sbjct: 35  IEVCRKLRDKTNVPRLMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 94

Query: 121 VSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V  + A        +        +        E   L  +E  +L++  +N G+   KTQ
Sbjct: 95  VLGSDANIQEKTTLTFKGLLIDLNIYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 154

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213
           +F  ++   D  +E +N V  HI KLRKK+      DP + K
Sbjct: 155 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----VDPSNPK 190


>gi|284989870|ref|YP_003408424.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063115|gb|ADB74053.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 232

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S+  ++ ++        L     G D  + KP   RE++ARV A+ RR +V
Sbjct: 64  EVCRQIRAESECYVLMLTARAEEVDLLIGLAVGADGYMAKPFSPRELVARVQALLRRPRV 123

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              R+            + V  D R+  V G V  L R E  +L  L +  G+ + +  +
Sbjct: 124 PAPRSAPVEESVLRLAELEVDEDSREVRVDGAVVDLTRTEFDLLTALASRPGRVLQRETL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
              ++   D      +VE+H+S LR+KL+   L    + + R +GY +
Sbjct: 184 LREVWQ-TDWEGSVRLVEAHMSNLRRKLQAAGLSSPSIRTVRGVGYRL 230


>gi|114705837|ref|ZP_01438740.1| transcriptional regulator [Fulvimarina pelagi HTCC2506]
 gi|114538683|gb|EAU41804.1| transcriptional regulator [Fulvimarina pelagi HTCC2506]
          Length = 238

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 12/171 (7%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE  L+L R +R     P++ ++    + + ++  ++GVDD + KP   RE+L R+  I 
Sbjct: 72  GENGLDLVRSLRQTRDCPILMLTARSEIDSRIEGLEAGVDDYLAKPFDPRELLLRLNNIL 131

Query: 117 RR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +R      V+      GP       R+ +  GE+  L  RE+ I+    A  G+ V +  
Sbjct: 132 KRGAGQTPVTIETVCFGPFAFNLSRRELKRGGEIVRLTDREQDIMAQFAAKPGETVPRLD 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           +        +  + E  ++  I++LR+K+    G +P  + + R +GY ++
Sbjct: 192 LLGE-----ENEIGERTIDVQINRLRRKIEPDPG-NPLWLQTVRGVGYRLN 236


>gi|49481122|ref|YP_039105.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332678|gb|AAT63324.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 225

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKMTPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + N         +F D     V+  G+   L +RE  +L +L+ N+   +++  + + +
Sbjct: 122 NLQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 182 WG-HNVVVNPNVVDLYIGYIRKKLKCEKKNRYIQTIHGRGYSM 223


>gi|261378254|ref|ZP_05982827.1| DNA-binding response regulator [Neisseria cinerea ATCC 14685]
 gi|10880475|gb|AAG24269.1|AF139614_1 BasR [Neisseria cinerea]
 gi|269145335|gb|EEZ71753.1| DNA-binding response regulator [Neisseria cinerea ATCC 14685]
          Length = 222

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 23/228 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A++ +   A   D G +++   +        ++   D+  ++  L G+ + +  
Sbjct: 4   LLVEDDAMIAEAVSANLKDGGYAVDWVKNGAQVAAAAAAQPYDLMLLDLGLPGR-DGLDV 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L  I  A   VP++ ++    L + L+  D G DD + KP    E+ AR+ A+ RR    
Sbjct: 63  LSEIRAAGCTVPVLIVTARDDLYSRLNGLDGGADDYIVKPFDMAELKARMRAVLRRGSGQ 122

Query: 119 --LKVSNNRAETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               +SN      P    + + ++ R          L  +E  +L+ L+A  G  ++++ 
Sbjct: 123 AQACLSNGALSLNPATYQVEIIAERRQ-------VALSNKEFAVLQALLARPGVILSRSD 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   IYG   E VE N V+  I  LRK    KLG + + + R +G+ +
Sbjct: 176 LEDKIYGWGAE-VESNAVDFLIHALRK----KLGKENIQNVRGVGWLV 218


>gi|325264640|ref|ZP_08131370.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030302|gb|EGB91587.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 233

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 10/151 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSSTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 AE     V  DG    +        G    +P +E  +L +L A+  +   + Q
Sbjct: 125 VKPEEPAEDKTKCVEYDGLTINLTNYSVVCDGHPVEMPPKELELLYFLAASPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   I+G ++   +   V+ HI +LR+K+++
Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREKIKD 214


>gi|311696852|gb|ADP99725.1| two-component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 241

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 14/156 (8%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+  L L R +R H+++P+I ++        +   + G DD + KP + RE+LAR+ A+ 
Sbjct: 60  GDDGLTLCRYLREHTELPVILLTAMSEETDRIVGLEMGADDYLTKPFNPRELLARIKAVL 119

Query: 117 RRLK-VSNNRAETGPIRVFSDGR----------DPEVQGEVFPLPRRERRILEYLMANRG 165
           RR   +   R+      +  +G           DPE  G    L   E ++L   + + G
Sbjct: 120 RRTTALPPQRSPMAGQSLTFEGWTLDVDRHQLIDPE--GVEVSLSTAEYKLLLAFLEHAG 177

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           + +++ Q+     G   +A + + +++H+S+LR+K+
Sbjct: 178 RVLSRDQLMDLTLGREADAFDRS-IDNHVSRLRRKI 212


>gi|256376335|ref|YP_003099995.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255920638|gb|ACU36149.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 244

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 4/148 (2%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   LE+ R +R  S   ++ ++        L    +G DD + KP   RE++ARV  + 
Sbjct: 73  GPDGLEVCRRLRQFSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVL 132

Query: 117 RRLKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR ++    ++R   GP+ V  D R  EV G      + E  +L  +  N  +   + Q+
Sbjct: 133 RRPRIPAARDSRRVVGPVEVDLDARSVEVNGNHVATTKIEFELLAAITENTRQVRTRDQL 192

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
               +G  +   +++ V+ H+S LR+KL
Sbjct: 193 RRRAWG-EEWLADDHAVDVHVSNLRRKL 219


>gi|225571365|ref|ZP_03780361.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
 gi|225159841|gb|EEG72460.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
          Length = 234

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 11/152 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          E   I +        V G    +P +E  +L +L ++  +   + 
Sbjct: 125 VPKAEEPAEDKGKCVEYPGIVINLTNYSVVVDGANVDMPPKELELLYFLASSPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           Q+   I+G ++   +   V+ HI +LR+K+++
Sbjct: 185 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKD 215


>gi|187778087|ref|ZP_02994560.1| hypothetical protein CLOSPO_01679 [Clostridium sporogenes ATCC
           15579]
 gi|187775015|gb|EDU38817.1| hypothetical protein CLOSPO_01679 [Clostridium sporogenes ATCC
           15579]
          Length = 240

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 17/188 (9%)

Query: 27  EGFNSLEFEEWLQSSARE------DVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIGIS 79
           EGF ++ +   L+   +E      D+  ++  L  G+G    EL + IRA S+VP++ +S
Sbjct: 31  EGFQNIYYATNLEDGLKEFNKVEPDILILDVMLPDGEG---YELCKTIRAKSKVPILFLS 87

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRV 133
                   +  F  G DD + KP   +E+  RV A  RR      +K   N    GP  +
Sbjct: 88  AKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYSYVDEVKEEKNILSFGPFEL 147

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
                + +  GE+  L  +E  ++ +   +  + ++K +I   ++G  D    +N +  H
Sbjct: 148 NISKAEFKRDGEIIELKPKELALITFFAKHPNQIISKEKICDNVWGE-DYYGFDNTIMVH 206

Query: 194 ISKLRKKL 201
           I +LR+K+
Sbjct: 207 IRRLREKI 214


>gi|169795473|ref|YP_001713266.1| putative two-component system sensor protein (ColR-like)
           [Acinetobacter baumannii AYE]
 gi|213158589|ref|YP_002319886.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215482958|ref|YP_002325163.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|239501406|ref|ZP_04660716.1| response regulator [Acinetobacter baumannii AB900]
 gi|260554534|ref|ZP_05826755.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|301345795|ref|ZP_07226536.1| response regulator [Acinetobacter baumannii AB056]
 gi|301596632|ref|ZP_07241640.1| response regulator [Acinetobacter baumannii AB059]
 gi|332855208|ref|ZP_08435759.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332872013|ref|ZP_08440400.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|169148400|emb|CAM86265.1| putative two-component system sensor protein (ColR-like)
           [Acinetobacter baumannii AYE]
 gi|213057749|gb|ACJ42651.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213986296|gb|ACJ56595.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|260411076|gb|EEX04373.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|332727585|gb|EGJ59007.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332731046|gb|EGJ62349.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 231

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           +P++ ++   +L   L  F +G DD + KP    E++ R+ A+ +R   +V++++ +   
Sbjct: 77  IPVLMLTARDTLDDKLKGFTAGTDDYLVKPFDFNELVMRIRALIKRAAGEVTHHKIQIHD 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + S  +     G    LP  + ++L+ LM    K V K ++   ++G  DE  E + +
Sbjct: 137 LILDSATQTVVRAGNNIELPPIQFKLLKILMRQSPKVVTKQELMMELWG--DEEPESDAL 194

Query: 191 ESHISKLRKKLRNKLGFDP 209
            SHI  LRK +     FDP
Sbjct: 195 RSHIYNLRKMVDKP--FDP 211


>gi|254285882|ref|ZP_04960844.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226]
 gi|150424064|gb|EDN16003.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226]
          Length = 228

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 14/123 (11%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAETGPIRVFSDGRDPEVQGE 145
            + G DD + KP   RE+LAR+ AI RR +      +++  E   I+V+   ++   QG+
Sbjct: 90  LELGADDYLPKPFSDRELLARIRAILRRTQNGLAPKNSDVIECQDIQVYPGKQEAYCQGQ 149

Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201
           +  L   E  +L + + + G  + K  +   + G     FD A     ++ H+S LRKKL
Sbjct: 150 LLELTTTEFALLTHFVQSPGATLTKEMLSIEVLGKHLAAFDRA-----IDMHVSNLRKKL 204

Query: 202 RNK 204
            ++
Sbjct: 205 PDR 207


>gi|149202581|ref|ZP_01879553.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. TM1035]
 gi|149143863|gb|EDM31897.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. TM1035]
          Length = 229

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R ++  S+   +P+I +S        +   ++G DD V KP    E++ARV A  R
Sbjct: 65  IEVCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLR 124

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFS 175
           R + +        + +  D     V     PL     E R+L   M   G+  ++ Q+  
Sbjct: 125 RTRPATVGERLEYLDIVLDAETHRVTRCEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 185 RVWG-RDIYVDTRTVDVHIGRLRKALCQHGGDDPLRTVRGAGYAL 228


>gi|221069624|ref|ZP_03545729.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714647|gb|EED70015.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 249

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 12/169 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+IR  S VP+I ++        L     G DD V KP +  E++ARV A+ RR +    
Sbjct: 83  RMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQAKPA 142

Query: 125 RAET----GPIRVFSDGRDPEV---QGEVFPLP--RRERRILEYLMANRGKRVAKTQIFS 175
                   GPI +  +     V    G+  PL     E R+L  L A   +  ++  +  
Sbjct: 143 PVAAPIRVGPIEIDVEAHSAAVYDDAGQAVPLALTLTEFRLLACLAAQPRRCFSRAYLIE 202

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
               L +    E V++SH+SKLR+KL+       +++ R +GY +  W+
Sbjct: 203 NC--LPESDALERVIDSHLSKLRRKLQLAGQDGLIETVRGIGYRLWPWD 249


>gi|159899244|ref|YP_001545491.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892283|gb|ABX05363.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 226

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 3/144 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR  S VP++ ++     Q  +   DSG DD V KP    ++LARV A+ RR+  
Sbjct: 64  ETCRRIREFSNVPILMLTANIQDQQIVSGLDSGADDYVTKPYSPSQLLARVRALLRRIPP 123

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                 A  G + +    R+ +V+ +V  L   E ++L  L  + G+ V   ++  +I+G
Sbjct: 124 QRPIITAGEGLMVLDRQRRELKVKDKVIDLTPTEYQLLILLADSVGQVVPHEKLLGSIWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRN 203
              E+ + + ++ +I  LR+KL +
Sbjct: 184 SGKES-DHDSLKVYIWHLRRKLED 206


>gi|150378255|ref|YP_001314850.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032802|gb|ABR64917.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 239

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE  L + R +R  +++P+I ++        +   + G DD + KP + RE+LAR+ A+ 
Sbjct: 60  GEDGLTVCRQLRTTTELPVIFLTAMADGTDRIVGLELGADDYITKPFNPRELLARIRAVL 119

Query: 117 RR---LKVSNNRAETGPIRV----FSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKR 167
           RR   L    +R +   IR        GR   V   G   PL   E R+L   + + G  
Sbjct: 120 RRVNSLPPQRSRIKAKTIRFDVWELDTGRRELVGRDGISVPLSTAEFRLLSAFLEHPGLV 179

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +++ Q+     G   E+ + + +++ +S+LRKK+ +
Sbjct: 180 LSRDQLLDLTAGRAAESFDRS-IDNQVSRLRKKIES 214


>gi|90819113|dbj|BAE92482.1| unnamed protein product [Porphyra yezoensis]
          Length = 186

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 9/146 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------L 119
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR       L
Sbjct: 14  LRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKITTSL 73

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V N+     G +++ ++ R      E   L   E  +LE L++  G+  ++  I   ++
Sbjct: 74  GVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASILQEVW 133

Query: 179 GLFDE-AVEENVVESHISKLRKKLRN 203
           G   E  V+  VV+ HIS+LR KL +
Sbjct: 134 GYTPERHVDTRVVDVHISRLRAKLED 159


>gi|15893516|ref|NP_346865.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023057|gb|AAK78205.1|AE007535_7 Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325507634|gb|ADZ19270.1| Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 223

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 25/207 (12%)

Query: 34  FEEW-LQSSAREDVSAI-EAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISD 80
            E+W  ++ A ED + I E F+  K   VL    LP          IR  S+VP+I +S 
Sbjct: 21  LEKWSFEAHAVEDFNDIFEQFVKVKPNLVLMDINLPVCDGFYWCSKIRNISKVPVIFLSS 80

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140
             S    +   + G DD + KP     ++A++ AI RR   S +  E   I  F D    
Sbjct: 81  RSSNMDVVMAVNMGGDDYITKPFSIEILMAKINAILRR-TYSYSETEMDTIE-FKDVIIS 138

Query: 141 EVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESH 193
                V+       L + E +I+  LM N    V++ +I   ++   DE+ +++N +  +
Sbjct: 139 LKNNTVYYNENSIELTKNEFKIIYVLMKNHDSIVSREKIMQELWQ--DESFIDDNTLTVN 196

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I++LRKKL+ ++G D + + +  GY I
Sbjct: 197 INRLRKKLK-EIGVDFIKTIKGQGYVI 222


>gi|56420909|ref|YP_148227.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380751|dbj|BAD76659.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 9/189 (4%)

Query: 23  GVSLE--GFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
           G+ LE  GF  LE    EE L   ++  V A+   ++   +    +   IR  S VP++ 
Sbjct: 20  GMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQDGFAVCARIREQSDVPILF 79

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRAETGPIRVF 134
           ++        +     G DD + KP    E++AR+ A+ RR+   + ++ R + G + + 
Sbjct: 80  LTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRVRENDGRLQFGDLAID 139

Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
             GR   V GE   L  +E  +L +L  +RG+  ++  +   ++G +D       V++H+
Sbjct: 140 EKGRTVTVGGEAVKLTLKEFELLLFLAKHRGQVFSRDDLLVKVWG-YDYTGNARTVDTHV 198

Query: 195 SKLRKKLRN 203
             LR KL++
Sbjct: 199 KTLRMKLKD 207


>gi|332977099|gb|EGK13903.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 227

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ R +R  S++ +I ++        +   + G DD + KP   RE+ AR+ ++ RR  
Sbjct: 62  IEVCRELRKMSRMGIIMVTARTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRRME 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+ +  + + G + +         QG+  PL   E R+L  L A  G   ++ Q+ +A+
Sbjct: 122 GLEFTEQQMQRGELLISESQCRAWKQGKEIPLTPTEFRLLLTLAAKPGIVYSRLQLLAAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                   +E  V++HIS+LRKK+ +    DPV  +   G+
Sbjct: 182 EDELLN--DERTVDAHISRLRKKIEDAPS-DPVYIQTVYGF 219


>gi|300916216|ref|ZP_07132966.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300416452|gb|EFJ99762.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
          Length = 227

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 103/218 (47%), Gaps = 17/218 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + L + G++    D+G  L G++       L  +A  D+  ++  L    G  ++ + R 
Sbjct: 19  KGLTEAGFVVDHADNG--LTGYH-------LAMTAEYDLVILDIMLPDVNGWDIIRMLR- 68

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNN 124
             A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR    ++ +
Sbjct: 69  -SAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGNTMITES 127

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183
           + +   + V    R     G    L  +E  +LE+ + + G+ + ++ I S ++ + FD 
Sbjct: 128 QLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHHGEVLPRSLIASQVWDMNFDS 187

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + N ++  + +LR K+ N  G   + + R +GY ++
Sbjct: 188 --DTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLE 223


>gi|299069837|emb|CBJ41118.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum CMR15]
          Length = 228

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 15/166 (9%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           R IRA SQVP++ ++        +   D G DD V KP    E++AR+ AI RR      
Sbjct: 65  RRIRAASQVPVVMLTARGDNIDRISGLDLGADDYVPKPCTPGELVARLRAILRRTSGADA 124

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK----TQIFS 175
             +      GP+ ++   R     G    L   E  +LE L  + G+ V+K     Q F 
Sbjct: 125 GAAAGAIHAGPLALWPASRRATWLGSALELTGTEFSLLEVLARHAGRLVSKEDISLQAFD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
                FD       ++ HIS +R+KL  +    P + S R +GY +
Sbjct: 185 RPLARFDRR-----IDVHISSIRQKLGQRPDGQPWIVSVRGMGYQL 225


>gi|311743633|ref|ZP_07717439.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312763|gb|EFQ82674.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 221

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 14/199 (7%)

Query: 18  LFGDDGVSLEGFNSLEFE-EWLQS----SAREDVSAIEAF--------LIGKGEKVLELP 64
           L  DD  SL    S+  E E L +    S  + ++A E+F        L+  G   + + 
Sbjct: 2   LVVDDDASLAEMLSIVLEAEGLTAAVCRSGDKVMTAFESFRPDLVLLDLMLPGMDGMSVC 61

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IRA S VP+I ++        +   D+G DD + KP  + E++AR+ A  RR      
Sbjct: 62  RQIRATSSVPIIMLTAKSDTPDVVAGLDAGADDYLTKPFKNVELVARIKARLRRTDQLGE 121

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               G I +   G     +GE   L   E  +L  L+A   +   +  +   ++G +   
Sbjct: 122 PLVFGDIVLDPVGHTVTRKGEPLELTPLEFDLLACLLATPEQVFTREVLLQKVWG-YHHP 180

Query: 185 VEENVVESHISKLRKKLRN 203
            +  +V  H+++LR K+ +
Sbjct: 181 GDTKLVNVHMTRLRSKIED 199


>gi|293605229|ref|ZP_06687616.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292816372|gb|EFF75466.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 252

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 15/222 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D       D+G  +E  ++ +  E ++     D  A+   L+  G   LE
Sbjct: 18  LIVEDDAHIADLLRLHLRDEGYEVE--HAADGNEGMRRLEEGDWDALVLDLMLPGIDGLE 75

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + +  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 76  ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSSA 135

Query: 122 --SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              N R + G + V     DP     +V      L  RE  +L +   +  K  ++  + 
Sbjct: 136 IERNARIDAGSLAVHGVSIDPIARTVDVDDRRLDLTPREFDLLHFFARHPDKVFSRMDLL 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           + ++G   E   E+ V +HI++LR K+      DP D +R L
Sbjct: 196 NHVWGYQHEGY-EHTVNTHINRLRTKIEA----DPSDPQRIL 232


>gi|326201907|ref|ZP_08191777.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987702|gb|EGD48528.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 16/166 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120
           IR    +P++ +S        +   + G DD V KP +  E++ARV ++ RR        
Sbjct: 66  IREKYNIPVLMLSAKSEDTDKIIGLNMGADDYVTKPFNPLELVARVKSLLRRYVSLGSFV 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +TG + +  D ++ ++  +   L   E +IL++L  N GK  +  QI+  ++  
Sbjct: 126 AQSGVFKTGGLIIDDDAKEVKIDDKPVKLTPVEYKILKFLCENAGKVFSIDQIYEQVWNE 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221
              +  EN V  HI ++R+K+      +P D K       +GY I+
Sbjct: 186 PSFS-PENTVAVHIRRIREKIE----INPKDPKYLKVVWGIGYKIE 226


>gi|163814967|ref|ZP_02206354.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
 gi|158449650|gb|EDP26645.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
          Length = 229

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           L+ +  E+ S I   L+       E+ R IR    +P+I ++   +    +     GVDD
Sbjct: 38  LEKALSEEYSLILLDLMLPDMDGFEICRQIREKKDIPIIMVTAKKNDIDKIRGLGLGVDD 97

Query: 98  VVNKPIHHREILARVAAI---YRRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            V KP    E++ARV A    Y RL     + N+  E   +++    R   V  E     
Sbjct: 98  YVTKPFSPSELVARVKAHISRYERLVGSTALKNDVIEIRGLKIDKTDRRVYVDNEEKVFT 157

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
            +E  IL +L +N  K  +K ++FS I+ + D   +   V  HI K+R+K+
Sbjct: 158 NKEFDILCFLASNPNKVFSKDELFSKIWNM-DSIGDIATVTVHIKKIREKI 207


>gi|194364398|ref|YP_002027008.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347202|gb|ACF50325.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 229

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGP 130
            VP++ ++   +L   L  F +G DD + KP    E+LAR  A+ RR +++  +R + GP
Sbjct: 78  HVPVLMLTARDALVDKLQGFAAGADDYLIKPFDDAELLARCLALARRHRLNQPHRLQIGP 137

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +          G    +P+  +RIL  L       V ++++   ++G  DEA   + +
Sbjct: 138 LCIDRRTGQAWRDGVALEMPQLAQRILLELAEAWPCTVTRSELVQRLWG--DEAPPSDPL 195

Query: 191 ESHISKLRKKL 201
            SH+  LR+ L
Sbjct: 196 RSHLYLLRQVL 206


>gi|116071684|ref|ZP_01468952.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|116065307|gb|EAU71065.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 255

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 22/173 (12%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   N 
Sbjct: 76  RRLRAESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRGNA 135

Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             E+            G + V ++ R      E   L   E  +LE L  + G  V + +
Sbjct: 136 VVESRELPTGQGVLCLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPRAE 195

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219
           I   ++G     A +  VV+ ++++LR KL      DP     + + R +GYS
Sbjct: 196 ILEQLWGYPPRRAADLRVVDVYVARLRGKLEP----DPRNPELILTVRGIGYS 244


>gi|23098039|ref|NP_691505.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776264|dbj|BAC12540.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 227

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 11/165 (6%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E  + IR  S VP+I IS        +   + G DD + KP   RE++ARV  +++R   
Sbjct: 63  EFCKKIRNESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRSTS 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               ++  +R +   + V+ + R    +GE F    +E  +L  L  N  +  ++ ++  
Sbjct: 123 HRQDEIEEDRVKVDQLLVYKNERRVFFEGEEFETTTKEYDMLLLLAENPNRAFSREELLM 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G  D    +  V+  I ++RKK+ N     P+++    GY +
Sbjct: 183 KIWG-NDYFGSDRAVDDLIKRIRKKMGNI----PLETVWGFGYRL 222


>gi|113971609|ref|YP_735402.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|113886293|gb|ABI40345.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
          Length = 253

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 6/153 (3%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           ++  G+ +L   ++     Q+P++ ++       T+   +SG DD + KP    E+ AR 
Sbjct: 73  MLPDGDGLLLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRART 132

Query: 113 AAIYRR-LKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            A+ RR L  +  R   E   +R+  D R+        PL  +E  +L +L  +  +  +
Sbjct: 133 KALLRRHLSATPTRQLIEFEGLRIDLDSREVIAFDNPLPLTAKEFDLLTFLARHPQQVFS 192

Query: 170 KTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201
           +TQ+  A++G  FD    E+ V SHI++LR KL
Sbjct: 193 RTQLLDAVWGYRFDGF--EHTVNSHINRLRGKL 223


>gi|120600812|ref|YP_965386.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291159|ref|YP_001181583.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120560905|gb|ABM26832.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145562849|gb|ABP73784.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 229

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 84/168 (50%), Gaps = 14/168 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + +R + ++P++ ++     +  +   D+G +D ++KP   RE++AR+  + R L 
Sbjct: 62  IELLQTLRRNDKIPVLVLTARDQEEEKIRLLDAGANDYLSKPFGIRELIARIKVLVRDLV 121

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++ ++      +++        +  +   L ++E  ++E LM+  G+ V +T +   I
Sbjct: 122 DESSLSDVLHFATLKLQKSTHQLWINKQEIALTKKEFALMETLMSPPGQLVKQTVLLRKI 181

Query: 178 YGLFDEAVEENVVESH-----ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G      E +  +SH     +S+LRKKL +      + ++  LGY +
Sbjct: 182 WG------ETHQEDSHYLRILVSQLRKKLNDNNEQQLIKTEAGLGYRL 223


>gi|291442113|ref|ZP_06581503.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345008|gb|EFE71964.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 228

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 13/170 (7%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           R DV  ++  L   G   L++ R IR   QVP+I ++        +   ++G DD V KP
Sbjct: 45  RPDVVVLDLML--PGMSGLDVCRRIRDRDQVPIIMVTARGDDVDVVVGLETGADDYVVKP 102

Query: 103 IHHREILARVAAIYRRLKVS-----NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156
           +  R + AR+ A+ RR   S       RAET G + V   G     +GE   L   E R+
Sbjct: 103 VQARVLDARIRAVLRRQDASLPDGTRPRAETHGELVVDRAGLVVTHRGEPVALAPSELRL 162

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
           L  L A+ G+  ++ Q+  A++   + +   ++    +    K+LRNKLG
Sbjct: 163 LLTLSASPGQVFSRQQLLEAVW---EHSYHGDI--RLVDACVKRLRNKLG 207


>gi|289680029|ref|ZP_06500919.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
 gi|330980778|gb|EGH78881.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 230

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 11/153 (7%)

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NN 124
           R  S VP++ +S   S    +   D+G +D V KP   +E LAR+ A+ R+   S   ++
Sbjct: 71  REWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASGSEKPDS 130

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             E GP+ V    R   + G+   L R+E  +L  L  + G+ + + Q+   I+G     
Sbjct: 131 ALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG----- 185

Query: 185 VEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216
              +  +SH  ++    LR KL  DP  + RF+
Sbjct: 186 -PTHTEDSHYLRIVVGHLRQKLADDPT-APRFI 216


>gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
          Length = 232

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ +++  E G + +  + R  +V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQHVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|58337060|ref|YP_193645.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|58254377|gb|AAV42614.1| response regulator [Lactobacillus acidophilus NCFM]
          Length = 240

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 25/179 (13%)

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR+
Sbjct: 64  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL----------------EYLMAN 163
            +     E  P     D +D E+  +   + +  R +L                 Y MA 
Sbjct: 124 MM-----EEEPDTAKEDKQDYEITTKHLKISKNRREVLFDKQPVTNLTPKEFDLLYTMAQ 178

Query: 164 RGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + K+V ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 179 KPKQVFSREQLLELVWG-YEYYGEERTVDAHIKKLRQKL-EKVGAKVIQTVWGVGYKFD 235


>gi|24375906|ref|NP_719949.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350882|gb|AAN57393.1|AE015875_9 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 225

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 83/164 (50%), Gaps = 6/164 (3%)

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L   +RA  +Q P++ +S    +   +    +G DD + KP    E+L R   + +R 
Sbjct: 60  LKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRG 119

Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    +   G +++    R+  + G    L  +E ++L+YLM +  + +++T +F A+
Sbjct: 120 QSTPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLKYLMEHANQVISRTLLFEAV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   FD     NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 180 WDYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|13476389|ref|NP_107959.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14027150|dbj|BAB54104.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 239

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 13/157 (8%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
           +  P++ +S    +   +    +G DD + KP    E+LARV  + RR   S   AET  
Sbjct: 86  NTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRR--ASAKEAETVY 143

Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
             G + +               L  RE R+LEYLM + G+ V +T +   ++   FD   
Sbjct: 144 RVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP-- 201

Query: 186 EENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           + NV++ H+S+LR K+    GFD   + + R  GY +
Sbjct: 202 QTNVIDVHVSRLRGKIEK--GFDKPILHTVRGAGYML 236


>gi|330949894|gb|EGH50154.1| DNA-binding response regulator CpxR [Pseudomonas syringae Cit 7]
          Length = 229

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +   +   NS E  E    S R D+  ++  +       +
Sbjct: 4   VLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEVEALSGRHDIVVLDIMM--PRISGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IRA SQVP+I ++        +   + G DD V KP    E++AR+ AI RR++ 
Sbjct: 62  EVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRA 121

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      + G + ++   R+   QG    L   E  +LE L  + G+ V+K  +  
Sbjct: 122 VPVIETVREVIQAGELMLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSM 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
              G    A  +  ++ HIS +R KL  RN      + S R LGY +
Sbjct: 182 NALG-RPLARYDRSIDVHISSIRHKLGPRND-NQSWIQSVRNLGYML 226


>gi|329929475|ref|ZP_08283209.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328936363|gb|EGG32810.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYR-RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151
           +G DD + KP    E+LAR+ A  R +          GP  +    ++    GE   L  
Sbjct: 99  TGADDYMAKPFSFEELLARIQARLRNQFPSLLGEIRLGPFTIDDRKKEISYLGEALELSP 158

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
            E ++L+ L+   G  ++K+ I + ++  +D   E+N+VE +I  LR+KL +K     + 
Sbjct: 159 TEYKLLKLLVTKHGSVLSKSNILNIVWD-YDFGGEDNIVEVYIRSLREKLGDK-EHRVIR 216

Query: 212 SKRFLGYSID 221
           + R  GY +D
Sbjct: 217 TLRGAGYRVD 226


>gi|325521242|gb|EGD00125.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. TJI49]
          Length = 219

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 99/215 (46%), Gaps = 15/215 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  + +DG++  G +  E EE+       D+  ++  L   G+    L + +
Sbjct: 18  KGLTEAGYVVDWVEDGIT--GQHQAETEEY-------DLLVLDVML--PGQDGWTLLQNL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           R     P++ ++    +   +   + G DD + KP    E+ AR+ +I RR +   +N  
Sbjct: 67  RRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQPRDSNTL 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
               + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ + F+   
Sbjct: 127 RAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDMNFNS-- 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + NVV+S I +LR K+ +      + + R +GY +
Sbjct: 185 DTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVL 219


>gi|293572383|ref|ZP_06683365.1| regulatory protein VanR [Enterococcus faecium E980]
 gi|291607543|gb|EFF36883.1| regulatory protein VanR [Enterococcus faecium E980]
          Length = 229

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 61  MQVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPE----VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
           ++++ ++ +   +      +D      + G+   L   E  IL YL+A+   RV +  +I
Sbjct: 121 MQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGIL-YLLASHPNRVFSADEI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
           F  ++   +  V    V  H+S LR K+    G + V    + +GY ID
Sbjct: 180 FERVWKQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|289551477|ref|YP_003472381.1| Two-component response regulator BceR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658987|ref|ZP_07911854.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289181008|gb|ADC88253.1| Two-component response regulator BceR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496111|gb|EFU84439.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 224

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 7/142 (4%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121
           R +R  S VP++ +S   +    +   + G DD + KP +   ++A++ AIYRR+    V
Sbjct: 64  RKMRQVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFGV 123

Query: 122 SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              R       V    +D  +   +V  L + E  ILE L+  + + V +  + +A++  
Sbjct: 124 EEKRILNWQKAVVDLSKDSIQKDDKVIYLSKTEMIILEMLITKQNQIVTRDTLITALWE- 182

Query: 181 FDEA-VEENVVESHISKLRKKL 201
            DEA V +N +  ++++LRKKL
Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKL 203


>gi|288937248|ref|YP_003441307.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290512652|ref|ZP_06552018.1| two-component system, OmpR family, catabolic regulation response
           regulator CreB [Klebsiella sp. 1_1_55]
 gi|288891957|gb|ADC60275.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289774993|gb|EFD82995.1| two-component system, OmpR family, catabolic regulation response
           regulator CreB [Klebsiella sp. 1_1_55]
          Length = 229

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 9/133 (6%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFP 148
           G DD + KP   RE+ ARV  + RRL+     A +  +RV     D +       G+   
Sbjct: 97  GADDYIAKPFSPREVCARVRTVLRRLQ--KFAAPSPVVRVGEFVLDEQAASISWFGQPLN 154

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGF 207
           L R E  +L+ L+   G+  ++ Q+   ++    E+++   V++HI  LR KLR      
Sbjct: 155 LTRYEFLLLKTLLHAPGRVFSRQQLMELVWSDAWESLDRT-VDTHIKTLRAKLRAVNPEV 213

Query: 208 DPVDSKRFLGYSI 220
            P+++ R +GYS+
Sbjct: 214 TPINTHRGMGYSL 226


>gi|266622614|ref|ZP_06115549.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
 gi|288865657|gb|EFC97955.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
          Length = 234

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 13/151 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S++P+I ++   +    +   + G DD + KP +  E+ AR+ AI RR   
Sbjct: 62  EVCQAIREFSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTK 121

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N R          +G +++  D R   +  +   L  +E  +LE L  N  K  ++ Q+
Sbjct: 122 KNRRESRAGSNVVTSGDLKLDRDSRRVFIGEKEINLTAKEFDLLELLACNPNKVYSREQL 181

Query: 174 FSAIYGLFDEAVEEN---VVESHISKLRKKL 201
            + ++G  ++A++      V+ H+ +LR+K+
Sbjct: 182 LTYVWG--NKAMDSGDVRTVDVHVRRLREKI 210


>gi|238757995|ref|ZP_04619176.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           aldovae ATCC 35236]
 gi|238703749|gb|EEP96285.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           aldovae ATCC 35236]
          Length = 229

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 12/155 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123
           +R  S +P+I +S   S +  +   D+G DD ++KP    E+LARV    RR     + +
Sbjct: 71  LRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHSGGSLES 130

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            R +   I V    R          L   E R+L  L+AN GK + + Q+ S ++G    
Sbjct: 131 PRVDFSDISVDLINRQVTRADVDLHLTPIEFRLLSALLANAGKVITQRQLLSQVWG---- 186

Query: 184 AVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216
               N VE SH  ++    LR KL  DP   K  L
Sbjct: 187 ---PNYVEHSHYLRIYMGHLRQKLETDPTRPKHLL 218


>gi|254452863|ref|ZP_05066300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
 gi|198267269|gb|EDY91539.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
          Length = 227

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 17/157 (10%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P+I +S        +   ++G DD V KP    E++ARV    RR++ S    + G + 
Sbjct: 78  IPIIMLSARSEEVDKVRGLETGADDYVVKPYAVAELMARVRTQLRRVRPS----KVGQVL 133

Query: 133 VFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            F D    E+  +   + R          E R+L   M   G+ +++ Q+   ++G  D 
Sbjct: 134 TFGD---IELDADTHRVTRSDVELKLGPTEFRLLATFMEKAGRVLSREQLLDRVWG-RDI 189

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V+   V+ H+ +LRK L    G DP+ + R  GY++
Sbjct: 190 YVDTRTVDVHVGRLRKVLTQNGGDDPLRTVRGAGYAL 226


>gi|154496221|ref|ZP_02034917.1| hypothetical protein BACCAP_00506 [Bacteroides capillosus ATCC
           29799]
 gi|150274304|gb|EDN01381.1| hypothetical protein BACCAP_00506 [Bacteroides capillosus ATCC
           29799]
          Length = 230

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 9/143 (6%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R IR  S VP++ +S +   Q  +  F  GVDD + KP   RE++ RVAAI +R + +  
Sbjct: 66  RAIRTFSDVPVLMLSVHGEEQDKVRGFKLGVDDFMVKPFSPRELMYRVAAILKRRRPAP- 124

Query: 125 RAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            A   PI       V    R   V G    L  +E  +L  L+++ G  + +  +  A++
Sbjct: 125 -APDAPILGIGGLVVDPAARLVSVDGRPVDLSPKEFDLLLQLVSHPGTAMPRQTLLEAVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
           G  D    E  +++HI ++R+ +
Sbjct: 184 GP-DRPKGERTLDTHIKQVRRAI 205


>gi|17547654|ref|NP_521056.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17429958|emb|CAD16642.1| putative response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 235

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----E 127
           + P++ ++   +L   +   ++G DD + KP    E+ AR+ A+ RR   S  RA     
Sbjct: 72  RTPVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIRR---SRGRAFPRLR 128

Query: 128 TGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            GP+  F  GR    + GE   L  RE   L  L+   G+ ++K  +F  ++ L D    
Sbjct: 129 CGPLE-FDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDKVFNL-DSDSS 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + VE  + +LRKKL    G   V + R LGY ++
Sbjct: 187 PDAVEVVVHRLRKKLAGS-GVQIV-TVRGLGYLLE 219


>gi|50084599|ref|YP_046109.1| putative 2-component regulatory protein [Acinetobacter sp. ADP1]
 gi|6127220|gb|AAF04314.1| putative 2-component regulatory protein [Acinetobacter sp. ADP1]
 gi|49530575|emb|CAG68287.1| putative 2-component regulatory protein [Acinetobacter sp. ADP1]
          Length = 226

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 8/131 (6%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
           G DD + KP    E++AR+ ++ RR     ++      G +++F +       G+   L 
Sbjct: 97  GADDYIVKPYDFDELVARIESVLRRGNYASLNELNFNVGQVQLFPNTHRILKDGQPINLS 156

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210
            +E  ILE +M    +  +K  +   +Y   DE +  N +E HI  LR+    KLG D +
Sbjct: 157 TKEWSILEPMMMYPNQIFSKQMLEEKLYDCDDE-INSNTIEVHIHNLRQ----KLGKDFI 211

Query: 211 DSKRFLGYSID 221
            + R LGY ++
Sbjct: 212 RNVRGLGYCVE 222


>gi|170736223|ref|YP_001777483.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|206562574|ref|YP_002233337.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|169818411|gb|ACA92993.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
 gi|198038614|emb|CAR54574.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 227

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 15/216 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  + +DG++  G +  E EE+       D+  ++  L   G+    L + +
Sbjct: 18  KGLTEAGYVVDWVEDGIT--GQHQAETEEY-------DLLVLDVML--PGQDGWTLLQNL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126
           R     P++ ++    +   +   + G DD + KP    E+ AR+ +I RR +   +N  
Sbjct: 67  RRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQPRDSNTL 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
               + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ + F+   
Sbjct: 127 RVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDMNFNS-- 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 185 DTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|318040077|ref|ZP_07972033.1| DNA-binding response regulator [Synechococcus sp. CB0101]
          Length = 265

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 31/185 (16%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            +I  GE  L     +R HS  PLI +     ++  +     G DDVV KP   RE+ AR
Sbjct: 49  LIILDGEMWLYSLMTLRQHSNTPLILLKANDEVRERVTALQLGADDVVVKPFSVRELEAR 108

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP-------------------LPRR 152
           + A+ RR+   N  +E     V     D   QG +                     L   
Sbjct: 109 IRAVLRRI---NRHSEV----VLDQDEDRAPQGLILGDLHLDFQRRQAFRGQQRIRLTDL 161

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVD 211
           E ++LE L+++ G+ + + ++   ++G   E +    +V+S +S+LR KL      DP D
Sbjct: 162 EMKLLEVLISHAGETLTRRELVQTVWGYDSEFISMRRLVDSAVSRLRAKLE----VDPDD 217

Query: 212 SKRFL 216
            +  L
Sbjct: 218 PELIL 222


>gi|288940679|ref|YP_003442919.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288896051|gb|ADC61887.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 244

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123
           IR+ S  P+I ++        L     G DD V KP +  E++ARV A+ RR + S    
Sbjct: 81  IRSRSDTPVIMLTALDQDIDKLMGLRLGADDYVVKPFNPAEVVARVQAVLRRTRPSTPAP 140

Query: 124 -NRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             R   G I++  D  +  +    + +   L   E ++L  LM    +  ++ ++   + 
Sbjct: 141 IQRLRVGAIQIDLDSHEASICRADRPQRLDLTLTEFKLLACLMRAPKRVFSRAELL--VD 198

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGY 218
            L +   +E  V+SHISKLRKKL   LG   V S  + +GY
Sbjct: 199 CLPEGDTQERTVDSHISKLRKKL-EALGIQGVPSSVWGVGY 238


>gi|225872886|ref|YP_002754343.1| KdpE [Acidobacterium capsulatum ATCC 51196]
 gi|225793152|gb|ACO33242.1| KdpE [Acidobacterium capsulatum ATCC 51196]
          Length = 238

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 12/220 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD A ++        + G  + E     E    LQS +  D   ++  + G G  +
Sbjct: 8   ILLVDDEAAIRRALRTSLQELGFETTEASRGEEALHLLQSQSF-DAVLLDLNMPGIG-GM 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R+     ++P++ ++     +  ++  +SG DD V KP   RE +AR+ A  RR K
Sbjct: 66  RTLTRMRTQCPRMPILILTVRDDEEDKIEALESGADDYVTKPFSMRECVARIRAAVRRAK 125

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N   E G IR+  + R     G+   L  +E  IL YLM N G+ V   ++ + 
Sbjct: 126 APDKPGNAPLEVGEIRLLPEQRLVYKGGQPVHLTPKEYEILHYLMTNAGRAVTHGKLLTT 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           ++G  D   E + + + + +LRKK+      DP + K  L
Sbjct: 186 VWG-ADYRQEIDYLRTFVRQLRKKIEE----DPSNPKYLL 220


>gi|148273950|ref|YP_001223511.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831880|emb|CAN02850.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 257

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 20/203 (9%)

Query: 18  LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRI------ 66
           L  DD  SL      +L +E W   +A     A+ A    K + V   + LP +      
Sbjct: 34  LVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGLQVL 93

Query: 67  --IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKV 121
             +RA ++ +P++ ++   SL   L    +G DD V KP    E++AR+  + RR  L V
Sbjct: 94  SRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSTLVV 153

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S++       G + +  D  +    G+   L   E  +L YLM N  + ++K QI   ++
Sbjct: 154 SDSVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILDRVW 213

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
             +D   + +VVE +IS LR+K+
Sbjct: 214 S-YDFGGKSSVVEIYISYLRRKI 235


>gi|197116643|ref|YP_002137070.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197086003|gb|ACH37274.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 224

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 14/153 (9%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
            P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR ++         IR
Sbjct: 73  TPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSELDRG----AEIR 128

Query: 133 VFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAV 185
            F+D R   V  +V+       L  +E  +LEY M N  + + +T I   ++   FD   
Sbjct: 129 -FADLRLDLVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWDYTFDSFT 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             N+++ +++ LRKK+  +     + + R +GY
Sbjct: 188 --NIIDVYVNYLRKKIDREADKKLIHTVRGVGY 218


>gi|91779387|ref|YP_554595.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91692047|gb|ABE35245.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 226

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 101/216 (46%), Gaps = 15/216 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + L + GY+  + +DGV+  G +  E E++       D+  ++  L   G+    L   +
Sbjct: 18  KGLSEAGYVVDWAEDGVT--GQHQAETEDY-------DLLILDVML--PGQDGWTLLHNL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           R     P++ ++    +   +   + G DD + KP    E++ARV +I RR K     + 
Sbjct: 67  RRTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGKPRETMSL 126

Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185
           +   + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ + F+   
Sbjct: 127 KVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWDMNFNS-- 184

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 185 DTNVVDSAIRRLRSKVDDAYEPKLIHTVRGMGYVLE 220


>gi|91784528|ref|YP_559734.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|170695467|ref|ZP_02886612.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187924829|ref|YP_001896471.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|296158187|ref|ZP_06841019.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307730483|ref|YP_003907707.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|323526816|ref|YP_004228969.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1001]
 gi|91688482|gb|ABE31682.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
 gi|170139658|gb|EDT07841.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187716023|gb|ACD17247.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|295891523|gb|EFG71309.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307585018|gb|ADN58416.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
 gi|323383818|gb|ADX55909.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 233

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 17/160 (10%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 76  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVAIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--L 180
             + +    RV +     E++ ++ P    E R+L + M +  +  ++TQ+   ++G  +
Sbjct: 136 GLKLDPATHRVAAHAEGSEIKLDLGP---TEFRLLHFFMTHPERVHSRTQLLDQVWGDHV 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F   VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 193 F---VEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|53804897|ref|YP_113275.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53758658|gb|AAU92949.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 243

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 31/229 (13%)

Query: 2   FVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            +++DD   +++   GY++ FG + V +    +++ +   +SS   D+  ++  L   GE
Sbjct: 8   ILIVDDDVEIRNLLGGYLSRFGMEAVGVHDGAAMK-KALTESSF--DLVVLDLML--PGE 62

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             L L R +R  S +P+I ++        +   + G DD V KP   RE++AR+ +I RR
Sbjct: 63  DGLTLCRSLRGESDIPVIMLTARGDPMDRVVGLELGADDYVAKPFEPRELVARIQSILRR 122

Query: 119 LKVSNNRAETGP--------------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
            +  + R    P               RV      PE  G V PL   E R+L   +   
Sbjct: 123 AR--HEREPESPESSDIAVEFEGWRLHRVLRQLTSPE--GMVVPLSNAEFRLLSVFIERP 178

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
            + + + Q+     G    A+E  V +  I  L  +LR KL  DP + K
Sbjct: 179 NRILTRDQLLDYARG---RAME--VFDRSIDLLVSRLRQKLQDDPKNPK 222


>gi|71908759|ref|YP_286346.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71848380|gb|AAZ47876.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 234

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 12/144 (8%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-------GPIRVFSDGRDPEVQ 143
            + G DD + KP+  R +LAR+ A+ RRL V+             G  ++    R   + 
Sbjct: 92  LEMGADDYIAKPVQPRVLLARIKALLRRLPVAGEGGSGESESMLFGQFKISQATRTAALA 151

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-- 201
           G+   L   E  +L  L ++ G  +++  +   + G+  + ++ + +++ IS+LRKKL  
Sbjct: 152 GQTIDLTTAEFDLLWLLASHAGNVLSRDDLLQELRGIGFDGLDRS-IDARISRLRKKLND 210

Query: 202 --RNKLGFDPVDSKRFLGYSIDWN 223
              N      V  K +L    DWN
Sbjct: 211 DPENPTRIKTVRGKGYLFSKHDWN 234


>gi|302521034|ref|ZP_07273376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429929|gb|EFL01745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 264

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 17/172 (9%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR  
Sbjct: 96  VSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFG 155

Query: 121 VSNNRAE-------TGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            +   A         GP+R     V ++G +    GE   L   E R+L    A  G  +
Sbjct: 156 HAGGGARQAVEEEAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVL 215

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ ++   ++  +    +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 216 SRDRLLERVWD-YGWGGDTRVVDVHV----QRLRAKIGQDRIETVRGFGYKL 262


>gi|298247426|ref|ZP_06971231.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550085|gb|EFH83951.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 239

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 17/160 (10%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-- 124
           IR  S VP+I I+     +  +   D G DD + KP    E+LARV A+ RR + S +  
Sbjct: 71  IREFSMVPIIIITARGQDRDKVKGLDLGADDYLTKPFSIEELLARVRAVLRRSRFSASEP 130

Query: 125 ------RAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +A  G + + +S     +   E+   P  E R+L YL  N G+ V   Q+   +
Sbjct: 131 GQSARMQASIGELTIDYSQHLIIKGTKELSLTP-IEYRLLAYLAQNMGRIVTHDQLLEHV 189

Query: 178 YGLFDEAVEENVVESHISKLR-KKLRNKLGFDPVDSKRFL 216
           +G       E + ESH+ ++   +LR KL  DP   +  L
Sbjct: 190 WG------SEYIGESHMLQVNINRLRRKLEPDPSHPRYLL 223


>gi|290968483|ref|ZP_06560022.1| response regulator receiver domain protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781479|gb|EFD94068.1| response regulator receiver domain protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 226

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L+GK    +EL  I       P+I  +   +    +   D G DD + KP    E+++RV
Sbjct: 61  LLGKMRHSVELENI-------PVIMATARGAEHEKIQALDLGADDYIVKPFGVMELVSRV 113

Query: 113 AAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            A+ RR +        + G + +  D R   ++GE   L  +E  +L   +++ G    +
Sbjct: 114 KAVLRRCRQGRVFELLQVGSLILNLDERTLTIEGERIMLTFKEFELLHLFLSHPGSAFTR 173

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            Q++  ++ + D   +   ++ HI  LR+KL  + G   +++ R +GY
Sbjct: 174 EQLYDLVWNI-DYMGDSRTLDMHIKTLRQKL-GRYG-KCIETVRHIGY 218


>gi|269959749|ref|ZP_06174128.1| transcriptional regulator [Vibrio harveyi 1DA3]
 gi|269835503|gb|EEZ89583.1| transcriptional regulator [Vibrio harveyi 1DA3]
          Length = 220

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 10/168 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ V  LP   +    +P+I ++   +++  +   DSG +D + KP    E+ AR+ A  
Sbjct: 57  GDSVQSLPEW-KKIKDIPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQL 115

Query: 117 RRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R    +     ++  T  + +    R+   +GE+  L R E  +L +L +N G+   + +
Sbjct: 116 RAPDSAEQGNADKVMTKDLEIDRATREVVFKGEMITLTRTEFDLLLFLASNLGRVFTRDE 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 176 LLDHVWG-YNHFPTTRTVDTHVLQLRQKLP---GLE-IETLRGVGYKM 218


>gi|258615288|ref|ZP_05713058.1| DNA-binding response regulator [Enterococcus faecium DO]
          Length = 183

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 15  MQVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 74

Query: 119 LKVSNNRAETGPIRVFSDGRDPE----VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
           ++++ ++ +   +      +D      + G+   L   E  IL YL+A+   RV +  +I
Sbjct: 75  MQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGIL-YLLASHPNRVFSADEI 133

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
           F  ++   +  V    V  H+S LR K+    G + V    + +GY ID
Sbjct: 134 FERVWKQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 181


>gi|227550620|ref|ZP_03980669.1| response regulator [Enterococcus faecium TX1330]
 gi|257896267|ref|ZP_05675920.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|227180244|gb|EEI61216.1| response regulator [Enterococcus faecium TX1330]
 gi|257832832|gb|EEV59253.1| transcriptional regulator [Enterococcus faecium Com12]
          Length = 236

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 68  MQVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPE----VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173
           ++++ ++ +   +      +D      + G+   L   E  IL YL+A+   RV +  +I
Sbjct: 128 MQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGIL-YLLASHPNRVFSADEI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221
           F  ++   +  V    V  H+S LR K+    G + V    + +GY ID
Sbjct: 187 FERVWKQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 234


>gi|261366315|ref|ZP_05979198.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282571914|gb|EFB77449.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 218

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 6/149 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP+I I+   +++  ++    G DD + KP    E+LARV ++ RR    N         
Sbjct: 72  VPVIFITAKGTVKERVEGLRRGADDYIVKPFVVEELLARVESVLRRAGRGNVMQAFDV-- 129

Query: 133 VFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
           V   G     Q G+   L   E ++LE LM NRG  + +  ++  ++G      +   ++
Sbjct: 130 VLDAGEHTVTQNGQPVDLTPNEFQLLEQLMRNRGAALYRDTLYERVWGGDRAETDTRTLD 189

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            HI +LR+KL     +D +++   +GY +
Sbjct: 190 LHIMRLRRKLH---WYDHIETVYRIGYRL 215


>gi|225849099|ref|YP_002729263.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644594|gb|ACN99644.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 228

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 9/149 (6%)

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE  +++R+    S  PLI ++   +    +   + G DD V KP   RE+LARV A+ R
Sbjct: 61  LEFCKLVRSDKEISHTPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKAVIR 120

Query: 118 RLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R K      S  + +   + +  +  +  ++G+   L   + ++L  L+   G+ +++  
Sbjct: 121 RSKSYHFPTSKPKYKFKDLEIIPEKFEVTIKGQHINLTITQFKLLLALVNAEGRVLSRDY 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201
           I   I+  +D+ + +  ++ HI KLR+ L
Sbjct: 181 ILENIWK-WDKDIYDRTIDVHIKKLREVL 208


>gi|129159|sp|P28835|YCF27_PORAE RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|14153|emb|CAA44464.1| regulatory protein [Porphyridium aerugineum]
          Length = 240

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 9/146 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123
           +R  S VP+I ++    +   +   + G DD + KP   +E+ AR+ ++ RR+     +N
Sbjct: 69  LRKESDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRRVDKASSNN 128

Query: 124 NRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N   +G I     ++  +        E   L   E  +LE L++  G+  ++  I   ++
Sbjct: 129 NLPNSGIINIGFLKIDVNKHQVYKNNERVRLTGMEFSLLELLISKAGQPFSRATILQEVW 188

Query: 179 GLFDE-AVEENVVESHISKLRKKLRN 203
           G   E  V+  VV+ HIS+LR KL +
Sbjct: 189 GYTAERQVDTRVVDVHISRLRAKLED 214


>gi|148550486|ref|YP_001270588.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148514544|gb|ABQ81404.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 240

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 24/161 (14%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE  L L R IR+ S  P++ +S        +   + G DD + KP + RE+LARV A+ 
Sbjct: 60  GEDGLSLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALL 119

Query: 117 RRLKVSNNRAET---GPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYL 160
           RR   ++  A +   G IR             + +DG    + G  F       R+L  L
Sbjct: 120 RRATPASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEF-------RLLAAL 172

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           +   G+ V + ++ + + G   E  + + +++ IS+LR+K+
Sbjct: 173 LEKPGEIVTRDELLNKVSGRASEPFDRS-IDNQISRLRRKI 212


>gi|116625337|ref|YP_827493.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228499|gb|ABJ87208.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 230

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 11/161 (6%)

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            EL R IR   A S+ P++ ++        +   + G DD + KP   RE++ARV A  R
Sbjct: 62  FELCRQIRHSSALSRTPVLFLTARSDEVDRVLGLEIGGDDYMTKPFSPRELIARVKAHLR 121

Query: 118 R--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R  +         GP R+    R   + G    L   E  +LEY + + G+  ++ Q+  
Sbjct: 122 REEMDAEPGAVGIGPFRLDRTARRVYLNGREISLTSTEFNLLEYFLTHPGRAYSRDQLLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           A++G     V    V+ H+ +LR+++  +      D+ R+L
Sbjct: 182 AVWG-EQRYVTPRTVDVHVRRLREQIEEQ-----PDAPRYL 216


>gi|229589618|ref|YP_002871737.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361484|emb|CAY48360.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 222

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 7/153 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           +P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR     N+       
Sbjct: 73  IPVLILTARDSWAERIEGLKAGADDYLAKPFHPEELYLRIQALLRRSHGQTNQPTLQAAG 132

Query: 133 VFSD-GRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           +  D GR   ++ G    L   E R+L Y M +  + ++K+ +   +Y    E  + NV+
Sbjct: 133 LHLDEGRQCVLRDGAEIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLYDGETER-DSNVL 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           E H++ LR+    KLG   ++++R  GY    N
Sbjct: 192 EVHVNHLRR----KLGRSVIETRRGQGYRFGAN 220


>gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
          Length = 232

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ +++  E G + +  + R  +V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQHVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|209520876|ref|ZP_03269617.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295677130|ref|YP_003605654.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|209498683|gb|EDZ98797.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295436973|gb|ADG16143.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 233

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122
            +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR         + ++
Sbjct: 76  HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVAIN 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             + +    RV +     E++ ++ P    E R+L + M +  +  ++TQ+   ++G  D
Sbjct: 136 GLKLDPATHRVAAHAEGSEIKLDLGP---TEFRLLHFFMTHPERVHSRTQLLDQVWG--D 190

Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 191 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|153810431|ref|ZP_01963099.1| hypothetical protein RUMOBE_00812 [Ruminococcus obeum ATCC 29174]
 gi|149833610|gb|EDM88691.1| hypothetical protein RUMOBE_00812 [Ruminococcus obeum ATCC 29174]
          Length = 221

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           ++P+I ++   +    +   DSG DD + KP    E+++R+ A  RR +           
Sbjct: 73  KIPVIMLTAKGTEYDVVMGLDSGADDYIPKPFRMMELISRIKARLRRAEDKGAEEYHLEN 132

Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
                GR    V  E   L  +E  +L  L+ N G  +++TQ+ + I+G ++   E   V
Sbjct: 133 LYLCPGRHIVTVDQEPVNLTLKEYEMLVLLLKNSGMVLSRTQLLNQIWG-YEFDGESRTV 191

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + HI  LR+KL +    D +++ R +GY I
Sbjct: 192 DVHIRTLRQKLGS--AGDLIETVRGVGYKI 219


>gi|153839375|ref|ZP_01992042.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ3810]
 gi|149747097|gb|EDM58085.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ3810]
          Length = 230

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 20/221 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66
           + L++ GY+     DGV  +G      EE+       D+  ++  L    G +VL   R 
Sbjct: 18  KGLIESGYVVDLVHDGV--DGLYHATSEEY-------DLILLDIMLPKLDGWQVLNTLR- 67

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
             +    P+I ++    ++  +  F+ G +D V KP    E+LARV  ++R    +   A
Sbjct: 68  -SSGINTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHIAAQVVA 126

Query: 127 ETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180
               +RV     D         G+   L  +E  +LE LM   G+ +++T I S ++ + 
Sbjct: 127 SPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIASLVWDMN 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   + NV++  + +LR K+        + + R +GY ++
Sbjct: 187 FDS--DTNVIDVAVKRLRSKVDKPFDRPLIHTVRGMGYKLE 225


>gi|297202817|ref|ZP_06920214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297148214|gb|EFH28896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 228

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 10/160 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--N 124
           IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR    +   
Sbjct: 68  IRKRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRTAHEDAPG 127

Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +T    G +R+    R   V G V  L R+E  +L  L    G    + QI S ++  
Sbjct: 128 GGDTGLVLGAVRIELPTRQVTVDGTVVQLTRKEFDLLALLAQRPGVVFRREQIISEVWRT 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E      +E H++ LR KLR     + V   R +GY +
Sbjct: 188 SWEGTGRT-LEVHVASLRAKLRMPALIETV---RGVGYRL 223


>gi|257870747|ref|ZP_05650400.1| two component transcriptional regulator [Enterococcus gallinarum
           EG2]
 gi|257804911|gb|EEV33733.1| two component transcriptional regulator [Enterococcus gallinarum
           EG2]
          Length = 232

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 16/162 (9%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYRR 118
           E+ R IR    +P+I ++        L     G DD ++KP    E++ARV A    Y R
Sbjct: 63  EICRNIRDKVDIPIIMVTAKSEELEKLRGLGIGADDYISKPFSPTELVARVKANIAQYNR 122

Query: 119 LK------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +K        ++  E G IR+ S      V G       RE  +L +LM N     +K Q
Sbjct: 123 IKRGQQTETVSSEIELGGIRINSQTHRVYVDGIEVDCKHREYELLLFLMENPEIVFSKEQ 182

Query: 173 IFSAIYGLFDEAVEE-NVVESHISKLRKKLRNKLGFDPVDSK 213
           ++  I+G+  EA+     V  HI++LR+K+      DP + +
Sbjct: 183 LYEKIWGM--EALGNIRTVAVHINRLREKVEE----DPTNPQ 218


>gi|254164047|ref|YP_003047155.1| DNA-binding transcriptional regulator BasR [Escherichia coli B str.
           REL606]
 gi|253975948|gb|ACT41619.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli B str. REL606]
          Length = 222

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E  QS      S +   L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L RI +    +P++ ++   +L   +   D G DD + K     E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKLFALEELHARIRALLRR-- 118

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             NN+ E+    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ 
Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           IY  +D     N +E HI      LR+K+G   + + R  GY +  N
Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219


>gi|228475155|ref|ZP_04059881.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|314936205|ref|ZP_07843552.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus hominis subsp. hominis C80]
 gi|228270766|gb|EEK12168.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|313654824|gb|EFS18569.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus hominis subsp. hominis C80]
          Length = 236

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 11/141 (7%)

Query: 91  FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            + G DD + KP   RE++ARV AI RR +++N   +           +  ++ E F + 
Sbjct: 93  LELGADDYMTKPFSPREVVARVKAILRRSQIANEVVKDDVDDEDIVIDNIRIRPEFFEVY 152

Query: 151 R---------RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
           R         +E  +L YL+  +G+ + +  + ++++  ++ A +  +V+ HIS LR KL
Sbjct: 153 RDDTLLELTPKEFELLLYLIERQGRVITREHMLNSVWN-YEFAGDSRIVDVHISHLRDKL 211

Query: 202 -RNKLGFDPVDSKRFLGYSID 221
             N      + + R LGY ++
Sbjct: 212 EENPKQPKLIKTVRGLGYKLE 232


>gi|283797300|ref|ZP_06346453.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291074970|gb|EFE12334.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|295090459|emb|CBK76566.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 234

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 17/213 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +  F +   +E L    RE++  +   ++  G   L
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGYRV--FKAENAKEGLDILDRENIHLVLLDIMMPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR  + +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCRKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                  L+ + N      + +  D     V  E   L   E  IL  L +N G+  +  
Sbjct: 124 LNPQSSALQGAKNEISIRGLVINKDNHKVTVYDEEIKLTPIEFDILYLLASNPGRVFSTD 183

Query: 172 QIFSAIYGLFDEAVEE--NVVESHISKLRKKLR 202
           +IF  ++   +E V E  N V  HI +LR K++
Sbjct: 184 EIFEKVW---NEKVYEANNTVMVHIRRLRGKMK 213


>gi|168185395|ref|ZP_02620030.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169296276|gb|EDS78409.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 222

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 4/144 (2%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SN 123
           IR +S+VP+I ++     +  L  ++ G DD V KP   + ++A+V A+ +R  V     
Sbjct: 66  IRQNSKVPIIMLTAKGEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRSVVEQKET 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           N      + +     + ++ G++  L  +E  +L +   N    +++  I   ++G FD 
Sbjct: 126 NIKNYNGLEINKLSNEVKIDGDIVNLSPKEYDLLIFFANNIDIVLSRDIILDKVWG-FDY 184

Query: 184 AVEENVVESHISKLRKKLRNKLGF 207
                 V++H+ +LR+KL+ K  F
Sbjct: 185 EGGLRTVDTHVKRLREKLKEKAKF 208


>gi|152992660|ref|YP_001358381.1| two-component response regulator [Sulfurovum sp. NBC37-1]
 gi|151424521|dbj|BAF72024.1| two-component response regulator [Sulfurovum sp. NBC37-1]
          Length = 220

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 3/148 (2%)

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           G G  +L + R        P++ +S    +   +   D+G DD + KP  + E+LAR+ A
Sbjct: 57  GDGLTLLNVLR--EEEDATPVLMLSANSKVDDRVAVLDAGGDDYLCKPYSNIELLARIRA 114

Query: 115 IYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR         ++G + + +  R   V  E   L   E  +LE L+ N+   + + Q+
Sbjct: 115 LLRRESPQKTTLLKSGDLTLDTSSRKVCVNKEPITLSPAEFDLLELLLHNKNIVLTRYQL 174

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201
              +   ++   + N+V+ HI  LRKK+
Sbjct: 175 NDYLCQDYNSLKQSNLVDVHIKNLRKKI 202


>gi|78213892|ref|YP_382671.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198351|gb|ABB36116.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 259

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 26/165 (15%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR        
Sbjct: 85  LRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRRVEKEQVAG 144

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++VS+ R +T   +VF       + G  F L       LE L++  G+   + +
Sbjct: 145 IPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSL-------LELLVSRSGEPFNRGE 197

Query: 173 IFSAIYGLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           I   ++G   E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 198 ILKEVWGYTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 238


>gi|16331854|ref|NP_442582.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1208484|dbj|BAA10652.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 241

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 7/137 (5%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--- 127
           + +P++ ++    +Q  +  FDSG DD + KP    E+LARV A+ RR       A+   
Sbjct: 74  ADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRTDRIPQAAKHSE 133

Query: 128 ---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               GP+ +  +  +    G+   L   E  +L  L+   G+ V+ + I   ++G ++  
Sbjct: 134 ILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDILREVWG-YEPD 192

Query: 185 VEENVVESHISKLRKKL 201
            +   +  HI  LR KL
Sbjct: 193 DDIETIRVHIRHLRTKL 209


>gi|329936872|ref|ZP_08286551.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
 gi|329303797|gb|EGG47681.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
          Length = 236

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 98/185 (52%), Gaps = 15/185 (8%)

Query: 45  DVSAIEAFLIGK-GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           DV  ++  L G  G ++L+L   +RA +  VP++ ++   +++  +     G DD V KP
Sbjct: 52  DVVVLDVMLPGADGFEILQL---LRARAVDVPVLFLTARDAVEDRVRGLRLGGDDYVTKP 108

Query: 103 IHHREILARVAAIYRRLKVSNNRAE--TGPIRVFSDGRDP--EVQ--GEVFPLPRRERRI 156
               E+ AR+ A+ RR +      E  TG      +  DP  EV+  GE   L   E R+
Sbjct: 109 FSVVEVGARLQALLRRARGGAPAPEETTGLRCADLEIDDPRHEVRRAGEPVDLSPTEYRL 168

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRF 215
           L YL++++G+ +++ QI  A++  +D   +  VVE  +S LR+K+    G +P + + R 
Sbjct: 169 LHYLLSHQGQVLSRAQILEAVWQ-YDFGGDTVVVERFVSNLRRKIDQ--GREPLLHTVRG 225

Query: 216 LGYSI 220
           +GY++
Sbjct: 226 VGYTL 230


>gi|326693100|ref|ZP_08230105.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 235

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 12/169 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR+ S++P+I ++   S    +   + G DD V KP  +RE++ARV A  R  K
Sbjct: 61  VEVLRQIRSKSEIPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRK 120

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                     V+    E G + +          G+   L  RE  +L YL  + G+ + +
Sbjct: 121 AVAQHSDDTVVNTEDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             +   ++G +D   +   V+  + +LR+K+  N    + + ++R +GY
Sbjct: 181 EHLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGY 228


>gi|319956246|ref|YP_004167509.1| two component transcriptional regulator, winged helix family
           [Nitratifractor salsuginis DSM 16511]
 gi|319418650|gb|ADV45760.1| two component transcriptional regulator, winged helix family
           [Nitratifractor salsuginis DSM 16511]
          Length = 229

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE  R +R +  + P+I ++      + L+ F  G DD + KP+   E+ ARV A  RR 
Sbjct: 66  LETFRQLRESGDRTPVIFLTSREDKASLLEGFAIGADDYLRKPVDLDELSARVRAALRRK 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N    GP R+ +  RD  + G+   L R+   +LE  +   G+ V +  I   ++ 
Sbjct: 126 NPQRN-IPLGPYRMDTRSRDLFLDGQPMKLGRKLYDLLELFVERSGEVVTQEAIKERLWH 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             DE   E  +  +I++L+     KL  D +++ R +GY  D
Sbjct: 185 -SDEEASEGAIRVYIARLK-----KLFPDAIENIRGVGYRFD 220


>gi|300698003|ref|YP_003748664.1| two-component response regulator transcriptional regulator
           [Ralstonia solanacearum CFBP2957]
 gi|299074727|emb|CBJ54285.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum CFBP2957]
          Length = 228

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 15/166 (9%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           R IRA SQVP++ ++        +   D G DD V KP    E++AR+ AI RR      
Sbjct: 65  RRIRAASQVPVVMLTARGDNIDRISGLDLGADDYVPKPCTPGELVARLRAILRRTSGADA 124

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK----TQIFS 175
             +      GP+ ++   R     G    L   E  +LE L  + G+ V+K     Q F 
Sbjct: 125 AAAAGAIHAGPLALWPASRRATWLGNALELTGTEFSLLEVLARHAGRLVSKEDISLQAFD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
                FD       ++ HIS +R+KL  +    P + S R +GY +
Sbjct: 185 RPLARFDRR-----IDVHISSIRQKLGQRPDGQPWIVSVRGMGYQL 225


>gi|299065501|emb|CBJ36670.1| putative response regulator, CheY family [Ralstonia solanacearum
           CMR15]
          Length = 235

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----E 127
           + P++ ++   +L   +   ++G DD + KP    E+ AR+ A+ RR   S  RA     
Sbjct: 72  RTPVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIRR---SRGRAFPRLR 128

Query: 128 TGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
            GP+  F  GR    + GE   L  RE   L  L+   G+ ++K  +F  ++ L D    
Sbjct: 129 CGPLE-FDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDKVFNL-DSDSS 186

Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + VE  + +LRKKL    G   V + R LGY ++
Sbjct: 187 PDAVEVVVHRLRKKLAGS-GVQIV-TVRGLGYLLE 219


>gi|296448530|ref|ZP_06890407.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296253969|gb|EFH01119.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 220

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 6/168 (3%)

Query: 52  FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            ++  G  +  L  + R    +P++ ++    +   ++  D+G DD + KP    E+ AR
Sbjct: 52  LMLPDGSGIEILAELRRCGDNLPVLLLTALDEVVDRIEGLDAGADDYLGKPFDLDELAAR 111

Query: 112 VAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + AI RR       + T G I +        + G    L RRE  +L  LM    +  +K
Sbjct: 112 IRAIVRRRDGRATPSLTLGGIVLDPADMSLSLDGAPVNLSRREFSVLAMLMEQPARIRSK 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++I   IYG + E VE N VE HI  LR     KLG D +++ R LGY
Sbjct: 172 SEIEDRIYG-WGEEVESNAVEVHIHNLRA----KLGRDAIETIRGLGY 214


>gi|228989718|ref|ZP_04149700.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228995917|ref|ZP_04155575.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003534|ref|ZP_04161352.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757772|gb|EEM06999.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763889|gb|EEM12778.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228770052|gb|EEM18634.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 223

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VS 122
           IR  S VP+I ++        +     G DD + KP   + ++AR+ A+ RR K    +S
Sbjct: 67  IRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLVARIEAVLRRTKKDGFIS 126

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N  E    +         V  E  PL   E  +L   + N  +  ++  +   I+G + 
Sbjct: 127 FNGIEWDKTK-----HTVTVYSEKIPLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-YQ 180

Query: 183 EAVEENVVESHISKLRKKLRNK 204
             +E   V+SHI  +R KLR K
Sbjct: 181 TDIEYRTVDSHIRNIRDKLRKK 202


>gi|281419285|ref|ZP_06250301.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|281407151|gb|EFB37413.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 231

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           IR    +P+I +S        +   + G DD V KP +  E++ARV + +RR        
Sbjct: 69  IREELNIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQFRRYTQLGGAE 128

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   + G + + ++ ++  V GE+  L   E  I+ +LM N GK  +  QI+  ++  
Sbjct: 129 RKSGVLKNGGLELDTEAKELRVDGELVKLTATEYGIVLFLMKNAGKVFSIDQIYENVWK- 187

Query: 181 FDEAVEENVVESHISKLRKKL 201
                 EN V  HI ++R+K+
Sbjct: 188 EPAYSSENTVAVHIRRIREKI 208


>gi|331268624|ref|YP_004395116.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
 gi|329125174|gb|AEB75119.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
          Length = 227

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 9/142 (6%)

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNR- 125
           +S++P+I +S    +   L     G DD + KP   RE++ R+ AI RR+   K++ N+ 
Sbjct: 70  NSEIPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRINKVKLTTNKE 129

Query: 126 ----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E G I++    R   +  +       E  IL  ++ N  K   + ++   I+G +
Sbjct: 130 TKKIIEKGFIKIMVLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTREELLDKIWG-Y 188

Query: 182 DEAVEENVVESHISKLRKKLRN 203
           D +     V+ HI ++RKKL N
Sbjct: 189 DFSGNTRAVDIHIKRIRKKLLN 210


>gi|329115847|ref|ZP_08244564.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
 gi|326906252|gb|EGE53166.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
          Length = 236

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 13/155 (8%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 -----------VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                      +S  +  T G +++  D    +  G    L  RE  +L +L  + G+ +
Sbjct: 121 TIETAVAEENAISGTQELTIGNLQILPDAFVAKKYGNEVELTHREFELLHHLANHIGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +  +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214


>gi|270262958|ref|ZP_06191229.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043642|gb|EFA16735.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 226

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +  + L G  GV  EG  S E+   +      D+S I+              R +R  S+
Sbjct: 26  NATLVLTGKAGV--EGALSGEYTAMILDIMLPDMSGIDVL------------RDVRKKSR 71

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-----KVSNNRAE 127
           +P+I ++        +   + G DD + KP + RE++AR+ A+ RR      +V +  A 
Sbjct: 72  MPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDERPEEVDDEIAI 131

Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           + G + +    R  E +G+ F L   E  +LE L+    + V+K ++     G   EA +
Sbjct: 132 SFGELTLNPSTRSSEWRGKAFDLTASEFNLLELLLRAPERVVSKDELSEKGLGRPREAYD 191

Query: 187 ENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSI 220
            + V+ HIS +R+KL     N L  + V   R +GY I
Sbjct: 192 RS-VDVHISNIRQKLGALTDNMLSIETV---RSIGYRI 225


>gi|302543545|ref|ZP_07295887.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461163|gb|EFL24256.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 236

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 35/230 (15%)

Query: 9   ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           AL +DG++     DG++ LE F +           R D++ ++  +   G   + L R I
Sbjct: 22  ALERDGFLVTAAPDGLTGLERFRA----------DRPDIALLDVMV--PGLDGVSLCRRI 69

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126
           R  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   ++    
Sbjct: 70  RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHASGPGG 129

Query: 127 ----ETGP------------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               + GP            + V  +G +    GE   L   E R+L    A  G  +++
Sbjct: 130 RGGEQPGPEEPEGGVLRFGDLEVDPEGMEVRKGGEQVALTPTEMRLLLEFSAAPGTVLSR 189

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   ++  +    +  VV+ H+    ++LR K+G D +++ R  GY +
Sbjct: 190 DRLLERVW-EYGWGGDTRVVDVHV----QRLRGKIGQDRIETVRGFGYKL 234


>gi|229145440|ref|ZP_04273826.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228638016|gb|EEK94460.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
          Length = 215

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 78/158 (49%), Gaps = 15/158 (9%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123
           I+ +S V ++ ++     +  L    SG D+ V KP H   ++ R   + +    ++V +
Sbjct: 66  IKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRAKKLIQHDDIIQVQD 125

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            +      +V+ +  + E+        + E  +++  + ++G  + + ++   ++G FD 
Sbjct: 126 VKINFAKNKVYKNDIELEI-------TKTELELIKCFLNHKGTILTRKKLLDIVWG-FDY 177

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             EE  V++H+ +LRK    K+G D + + R LGYS++
Sbjct: 178 FGEERTVDTHVRRLRK----KIGEDIIKTHRGLGYSLE 211


>gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 228

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 2/161 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R+   +P++ ++    +   +   ++G DD + KP  H E++ARV A+ RR  
Sbjct: 63  IEVCKRLRSADNIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRRAS 122

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      + V    R+ +    V  L  +E  +L   M +  + + + Q+   ++G
Sbjct: 123 PDSRKVLRFADLSVDLGTREVKRGQRVIDLTAKEFDLLVTFMQHPRQVLTRDQLLQIVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE +VV  ++  LR KL        + + R +GY +
Sbjct: 183 -FDMEVESHVVAVYVGYLRDKLEAGGESRLIHTLRGVGYVL 222


>gi|260587442|ref|ZP_05853355.1| DNA-binding response regulator RegX3 [Blautia hansenii DSM 20583]
 gi|260542309|gb|EEX22878.1| DNA-binding response regulator RegX3 [Blautia hansenii DSM 20583]
          Length = 223

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 19/170 (11%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + ++  +   +I ++    ++  +     G DD + KP H   +LAR+    +R   
Sbjct: 62  EICKQLKEKNLCSVIILTSRIQIEDEIHGLKLGADDFLTKPYHKGRLLARIENTLQRFSG 121

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               LK +    +     +++ G   +V      LP +E +ILE L+ + G+ V+K  +F
Sbjct: 122 FEGILKGNGFYLDKHTYTLYT-GNCSKV------LPEKEGKILEVLLEHSGEIVSKEDLF 174

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
             ++G     V+EN+++ ++++LRK L N LG  + V + R  GY   WN
Sbjct: 175 LMVWGT-QVYVDENILQVNMTRLRKTL-NTLGLKNMVQTVRGRGYL--WN 220


>gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 232

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172
               KV+ +++  E G + +  + R  +V GE   L  +E  IL YL+A+  K+V   + 
Sbjct: 124 LNQPKVAESKSALELGGVVINPERRTVDVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201
           IF  ++   D+  E  N V  HI  LRKKL
Sbjct: 183 IFQHVWA--DDYYEGGNTVMVHIRTLRKKL 210


>gi|16331899|ref|NP_442627.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001817|dbj|BAA10698.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 234

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 20/221 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           + LV + Y+  +  DG         +  ++L++   E   AI  +L+  G   LEL + +
Sbjct: 18  KVLVSEKYVVDWVTDGS--------QAWDYLENQWTEYTLAIVDWLL-PGLSGLELCQKL 68

Query: 68  RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           R   + +P++ ++     +  ++  D+G DD + KP    E+LAR+ A+ RR        
Sbjct: 69  RTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRALQRRSPQFQPQI 128

Query: 119 LKVSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           L + N   +     +     +P  ++ +   L  RE +I +YLM N  + ++ ++I   +
Sbjct: 129 LTLGNFSLDPSNNLLSVTISEPLNLERQEIALTVREFQIFQYLMQNPERIISGSKIRQQL 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + L DE    NVV + +  +R+KL  +    P+ +    GY
Sbjct: 189 WDL-DEEPMSNVVAAQMRLIRRKLAQQNCPCPIKTVPGQGY 228


>gi|89097111|ref|ZP_01170001.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89087934|gb|EAR67045.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 227

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 10/195 (5%)

Query: 16  IALFGDDGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           IA    D + + GF+S      EE L+ +   + S I   L+  G    +L R +R    
Sbjct: 13  IAELERDYLEVSGFDSDIASNGEEGLRLAKTNEYSLILLDLMLPGIDGFQLCREMREFLD 72

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131
           +P++ ++        +  FD G DD + KP +  E++ARV A   R  +V + + E   +
Sbjct: 73  IPILMVTARKEDIDKIRGFDRGADDYIVKPFNPNELVARVKAHTARYDRVISRQPEKREV 132

Query: 132 R-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186
           R     + +D R     GE      +E  +L +L +N  +  +K  +F  I+G +D   +
Sbjct: 133 RKRGLVMDADSRRVYADGEEKVFTAKEFDLLWFLASNPDRVFSKEHLFERIWG-YDSLGD 191

Query: 187 ENVVESHISKLRKKL 201
              V  HI K+R+K+
Sbjct: 192 ITTVTVHIRKIREKI 206


>gi|330811570|ref|YP_004356032.1| two-component response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379678|gb|AEA71028.1| putative two-component response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 17/217 (7%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
           R L + GY      DG+           E L  +   D + I   ++  G     + R +
Sbjct: 18  RGLSEQGYTVDVAPDGI-----------EGLHLALETDYAVIVLDVMLPGLDGFGVLRAL 66

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR    +   +
Sbjct: 67  RARKQTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRR-SGGHEPVQ 125

Query: 128 TGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184
                ++ D   R     G+   L  +E  +L  L   +G+ ++KT I   ++ + FD  
Sbjct: 126 VSIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDINFDS- 184

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + NVVE  I +LR KL        + + R +GY ++
Sbjct: 185 -DANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLE 220


>gi|332160502|ref|YP_004297079.1| DNA-binding response regulator CreB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607030|emb|CBY28528.1| two-component response regulator CreB [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664732|gb|ADZ41376.1| DNA-binding response regulator CreB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863453|emb|CBX73572.1| transcriptional regulatory protein creB [Yersinia enterocolitica
           W22703]
          Length = 232

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 8/136 (5%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DGRDPEVQGEVF 147
           G DD + KP   RE+ ARV  + RRL+ S + A +  +  F        G       +V 
Sbjct: 96  GADDYIAKPFSPREVSARVRTVLRRLQKSQSLATSATLHQFGYFTLDEAGARVTYHQQVL 155

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L R E  +L+ L+    +  ++ Q+   ++   +E+ ++  V++HI  LR KLR     
Sbjct: 156 WLTRYEYLLLKTLLLAPDRVFSRQQLMDIVWAQAEES-QDRTVDTHIKTLRSKLRMTHDE 214

Query: 208 D-PVDSKRFLGYSIDW 222
           + P+ + R LGYS+ +
Sbjct: 215 ESPIRTHRGLGYSLTY 230


>gi|313633173|gb|EFS00056.1| transcriptional regulatory protein SrrA [Listeria seeligeri FSL
           N1-067]
 gi|313637755|gb|EFS03112.1| transcriptional regulatory protein SrrA [Listeria seeligeri FSL
           S4-171]
          Length = 228

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 21/174 (12%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           + + R IR  S +P+I ++   S    +   + G DD V KP     ++AR+ A+ RR  
Sbjct: 60  MTICRKIREVSDMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQI 173
                +   +  ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+
Sbjct: 120 SATPAEADEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221
              ++G +    +E  V+ HI +LR+K+         D+K FL      GY  D
Sbjct: 180 LEQVWG-YQFYGDERTVDVHIKRLRQKI-------ATDTKPFLHTIWGVGYKFD 225


>gi|303234088|ref|ZP_07320736.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302494798|gb|EFL54556.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 231

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 13/166 (7%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S + +I +S    +    + F++  DD + KP    E+L R+ A+ RR K 
Sbjct: 68  DLLKEIRKTSDMAVIILSALDGIDDRKEGFENKADDYLVKPFFPDELLWRIDAVLRRSKN 127

Query: 122 SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N  +    +V  D     +   GE  PL   + +IL YL  N    V+  +I   I+ 
Sbjct: 128 IKNEEKINLGKVIFDKSKGILIKNGEEIPLTATQFKILSYLADNMNMIVSIDRILENIWE 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSI 220
             D    EN + +HI +LR+KL +    +P D K     + LGY +
Sbjct: 188 --DSYGYENTLITHIYRLREKLED----NPRDPKILITIKGLGYKL 227


>gi|300854679|ref|YP_003779663.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434794|gb|ADK14561.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 231

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 21/174 (12%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR   ++P+I +S    +   +   + G DD + KP    E++ARV A  RR   
Sbjct: 62  QLIKKIREKYKIPVIVMSAKSEISDKILGLELGADDYITKPCDPLEVMARVKAQLRRCSE 121

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E        G +++ +         +   +   E ++L  LM N  K   K QIF
Sbjct: 122 FNCNEEKDTETIVVGELKLDTSCCVIYKGDKPISITSTEYKLLLLLMGNPKKVFTKKQIF 181

Query: 175 SAI-----YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK--RFLGYSID 221
            ++     YG      ++N +  HISKLR K+      +PV  K  R LGY  +
Sbjct: 182 ESVWNEPFYG------DDNTIMVHISKLRDKIEED-SKNPVYLKTIRGLGYKFE 228


>gi|297538739|ref|YP_003674508.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297258086|gb|ADI29931.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 235

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           +R++   P+I ++   S    +   +SG DD + KP   + I+ARV A+ RR +    + 
Sbjct: 75  LRSNKLPPIIFLTGRSSEDDIVRVIESGADDYMVKPASRQLIMARVNALLRRTQ-PEYKN 133

Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           ET    G +++ +  R   + GE   L  +E  +  Y + N G  +++  +   ++G   
Sbjct: 134 ETVFDLGGLKIDTKQRLVLLDGEEIKLTDKELDLAWYFLKNVGVLLSRAHLMQVVWG-SS 192

Query: 183 EAVEENVVESHISKLRKKLR 202
             +E   V+ H+S LR KL+
Sbjct: 193 ADIETRKVDVHVSHLRTKLK 212


>gi|288956905|ref|YP_003447246.1| two-component response regulator [Azospirillum sp. B510]
 gi|288909213|dbj|BAI70702.1| two-component response regulator [Azospirillum sp. B510]
          Length = 231

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 9/150 (6%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + +R  SQ+P+I ++        L     G DD + KP   R ++ R+ A+ RR  
Sbjct: 62  MELLQRLRQTSQMPVIFLTSKDDELDELMGLRMGADDYIKKPFSQRLLIERIRALLRREA 121

Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    AE  P ++ + G             +G++  L   E  ++  L    G    + Q
Sbjct: 122 LRGETAEADPGQIITRGPLLLDGARHACNWKGQLIDLTVTEFLLVRALAQRPGHVKNRDQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR 202
           +  A YG     V++  ++SHI +LRKK +
Sbjct: 182 LMDAAYGEH-VYVDDRTIDSHIKRLRKKFK 210


>gi|262376780|ref|ZP_06070008.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308490|gb|EEY89625.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 238

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 10/164 (6%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   L + R +R H   P++ ++        +   + G DD V KP+  R +LAR+ A+ 
Sbjct: 63  GADGLTICREVRPHYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALL 122

Query: 117 RRL-KVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR  KV  +    R E   + + + GR   + G++      E  +L  L +N G+ +++ 
Sbjct: 123 RRTDKVPEDEVAQRIEFDDLVIDNGGRSVTLNGDLVDFTSAEYDLLWLLASNAGRILSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215
            IF  + G+  +  ++  ++  IS++R     K+G DP + KR 
Sbjct: 183 DIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 221


>gi|264676273|ref|YP_003276179.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533391|ref|ZP_07046773.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262206785|gb|ACY30883.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718597|gb|EFI59572.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 249

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 12/169 (7%)

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+IR  S VP+I ++        L     G DD V KP +  E++ARV A+ RR +    
Sbjct: 83  RMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQAKPA 142

Query: 125 RA----ETGPIRVFSDGRDPEV---QGEVFPLP--RRERRILEYLMANRGKRVAKTQIFS 175
                   GPI +  +     V    G+  PL     E R+L  L A   +  ++  +  
Sbjct: 143 PVAAPIRVGPIEIDVEAHSAAVYDDAGQAVPLALTLTEFRLLACLAAQPRRCFSRAYLIE 202

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
               L +    E V++SH+SKLR+KL+       +++ R +GY +  W+
Sbjct: 203 NC--LPESDALERVIDSHLSKLRRKLQLAGQDGLIETVRGIGYRLWPWD 249


>gi|225017545|ref|ZP_03706737.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
 gi|224949695|gb|EEG30904.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
          Length = 231

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 14/139 (10%)

Query: 94  GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQGEVF 147
           G DD V KP    E++ARV AI+RR+ +  N+ +      +GP  +    R     G   
Sbjct: 97  GADDYVAKPFSPSELVARVDAIHRRVNMIANQPQQVKSIVSGPFELNPKSRILTKNGVPV 156

Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
            L + E +I+E  M N+   + +T I + I+G  +   +  +V+ +I +LR K+ +    
Sbjct: 157 DLTQVEYQIMELFMKNQNVALDRTHILNEIWG-DNYYGDVKIVDVNIRRLRMKVED---- 211

Query: 208 DPVDSKRFL---GYSIDWN 223
           +P   K  L   G+   WN
Sbjct: 212 EPSSPKYILTIWGFGYKWN 230


>gi|261404682|ref|YP_003240923.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261281145|gb|ACX63116.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 3/130 (2%)

Query: 93  SGVDDVVNKPIHHREILARVAAIYR-RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151
           +G DD + KP    E+LAR+ A  R +          GP  +    ++    GE   L  
Sbjct: 99  TGADDYMAKPFSFEELLARIQARLRNQFPSLLGEIRLGPFTIDDRKKEISYLGEALELSP 158

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
            E ++L+ L+   G  ++K+ I + ++  +D   E+N+VE +I  LR+KL +K     + 
Sbjct: 159 TEYKLLKLLVTKHGSVLSKSNILNIVWD-YDFGGEDNIVEVYIRSLREKLGDK-EHRVIR 216

Query: 212 SKRFLGYSID 221
           + R  GY +D
Sbjct: 217 TLRGAGYRVD 226


>gi|187919636|ref|YP_001888667.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718074|gb|ACD19297.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 223

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 4/160 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++    +   +   + G DD + KP    E++ R+  + RR  +
Sbjct: 61  EIMRALRTRRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGVI 120

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E   +++    R    +G   PL  +E  +L  L+  +G+ +++TQI S ++ +
Sbjct: 121 RESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWDM 180

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            FD   + NVV+  I +LR K+ +      + + R +GY+
Sbjct: 181 NFDS--DTNVVDVAIKRLRAKVDHPFEKKLIHTVRSIGYT 218


>gi|134276940|ref|YP_537039.2| Ycf27 [Porphyra yezoensis]
 gi|125991250|sp|Q1XDC9|YCF27_PORYE RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
          Length = 243

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 9/146 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------L 119
           +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR       L
Sbjct: 71  LRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKITTSL 130

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V N+     G +++ ++ R      E   L   E  +LE L++  G+  ++  I   ++
Sbjct: 131 GVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASILQEVW 190

Query: 179 GLFDE-AVEENVVESHISKLRKKLRN 203
           G   E  V+  VV+ HIS+LR KL +
Sbjct: 191 GYTPERHVDTRVVDVHISRLRAKLED 216


>gi|123441540|ref|YP_001005526.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088501|emb|CAL11294.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 227

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 14/209 (6%)

Query: 24  VSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80
           +S EGF +   L  +E +  +   + +A+   ++      +++ R +R  S++P+I ++ 
Sbjct: 20  LSGEGFTAELVLTGKEGIDGALSGNYTALILDIMLPDMSGIDVLRQVRKKSRLPIIMLTA 79

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--- 137
                  +   + G DD + KP + RE++AR+ A+ RR    +    +G   V + G   
Sbjct: 80  KGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD-EHPDVPSGDDGVITHGDLT 138

Query: 138 -----RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
                R  E QG+ F L   E  +LE L+ +  + V K ++     G   EA + + V+ 
Sbjct: 139 LNPSTRSSEWQGKPFDLTASEFNLLELLLRSPDRVVTKDELSDKGLGRPREAYDRS-VDV 197

Query: 193 HISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           HIS +R+KL    G    +++ R +GY I
Sbjct: 198 HISNIRQKLAALPGSTLNIETVRSIGYRI 226


>gi|167039421|ref|YP_001662406.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300915404|ref|ZP_07132717.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307725255|ref|YP_003905006.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166853661|gb|ABY92070.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300888464|gb|EFK83613.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307582316|gb|ADN55715.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 231

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRLRQFSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE        +  D R   V  +G V  L   E +IL+ L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203
           + G FD    +  +++HI  LR+K+ +
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIED 208


>gi|33866776|ref|NP_898335.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639377|emb|CAE08761.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 248

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 26/165 (15%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118
           +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR        
Sbjct: 74  LRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKESVAG 133

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++VS+ R +T   +VF       + G  F L       LE L++  G+   + +
Sbjct: 134 IPNSGVIQVSDLRIDTNKRQVFRADERIRLTGMEFSL-------LELLVSRSGEPFNRGE 186

Query: 173 IFSAIYGLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           I   ++G   E  V+  VV+ HIS+LR KL +    DP + +  L
Sbjct: 187 ILKEVWGYTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 227


>gi|28900774|ref|NP_800429.1| transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365679|ref|ZP_05778193.1| transcriptional regulator [Vibrio parahaemolyticus K5030]
 gi|260896089|ref|ZP_05904585.1| transcriptional regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902119|ref|ZP_05910514.1| transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|28809220|dbj|BAC62262.1| transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088153|gb|EFO37848.1| transcriptional regulator [Vibrio parahaemolyticus Peru-466]
 gi|308109947|gb|EFO47487.1| transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|308111791|gb|EFO49331.1| transcriptional regulator [Vibrio parahaemolyticus K5030]
 gi|328470687|gb|EGF41598.1| transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 220

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 84/168 (50%), Gaps = 10/168 (5%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G+ V  LP   +    VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  
Sbjct: 57  GDSVQHLPEW-KKIKDVPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQL 115

Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R      + + ++  T  + +    R+   +G++  L R E  +L +L +N G+   + +
Sbjct: 116 RAPDSADQANADKVMTKDLEIDRATREVIFKGDLITLTRTEFDLLLFLASNLGRVFTRDE 175

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 176 LLDHVWG-YNHFPTTRTVDTHVLQLRQKLP---GLE-IETLRGVGYKM 218


>gi|110639115|ref|YP_679324.1| two component transcriptional regulator [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110281796|gb|ABG59982.1| two component transcriptional regulator, winged helix family
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 225

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPE 141
           +L+  +   D G DD + KP H  E+ AR+ +I RR +   N+      IR+  +  +  
Sbjct: 83  TLEDRIKGLDLGSDDYLTKPFHLSELNARLKSIVRRRQFDGNKDIIFNEIRLIPENHEVF 142

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKK 200
           V      L  +E  +L + ++N+G+ + K  I   I+G   D++   + + +HI  +R+K
Sbjct: 143 VNDTRVTLTGKEFELLLFFISNKGRVLPKDSIAEHIWGDHMDQSNSFDFIYTHIKNMRRK 202

Query: 201 LRNKLGFDPVDSKRFLGY 218
           L +    D + +   +GY
Sbjct: 203 LVDAGCKDYLTTVYGIGY 220


>gi|329114976|ref|ZP_08243731.1| Transcriptional regulatory protein ChvI [Acetobacter pomorum DM001]
 gi|326695419|gb|EGE47105.1| Transcriptional regulatory protein ChvI [Acetobacter pomorum DM001]
          Length = 249

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + +R  S +P+I +S        L     G DD + KP   R +L R+ A+ RR +
Sbjct: 78  MELLQRLRTRSNLPVIFLSSKNEEVDQLMGLRLGADDYITKPFSQRLLLERIRALLRRNE 137

Query: 121 VSNNRAE---TGPIRVFSDGRDPEV------QGEVFPLPRRERRILEYLMANRGKRVAKT 171
           VS   A    TG   V  +    E+      +GE  PL   E  +++ L    G   ++ 
Sbjct: 138 VSRAEANGEPTGGALVRGNLSLDELRHKCTWKGEDVPLTVTEFLLVKTLAQRPGLVKSRD 197

Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           Q+  A YG  D   V++  ++SHI ++RKK R     F+ +++   +GY
Sbjct: 198 QLIDAAYG--DTVYVDDRTIDSHIKRVRKKFRQVDDEFNQIETLYGIGY 244


>gi|325661025|ref|ZP_08149652.1| hypothetical protein HMPREF0490_00384 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472532|gb|EGC75743.1| hypothetical protein HMPREF0490_00384 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 223

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR  S VP++ +S        +     G DD V KP     +  ++ A+ RR       A
Sbjct: 67  IRKTSNVPILFLSSMSDNMNIVMAIQMGGDDFVTKPFDLNVLTVKIQALLRRTYAFQGSA 126

Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G +   SD      Q +   L + + +IL+ LM   G  V + +I   ++   D
Sbjct: 127 SVMEHKGVMLNLSDA-SVTFQSQKIELTKNDYKILQILMERAGTIVKREEIMQRLWE-SD 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           E +++N +  ++++LRKKL  +LG    + +K+ +GY I+
Sbjct: 185 EFIDDNTLTVNMTRLRKKLE-ELGVQEFIKTKKGIGYIIE 223


>gi|313900592|ref|ZP_07834085.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein SphR [Clostridium sp. HGF2]
 gi|312954654|gb|EFR36329.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein SphR [Clostridium sp. HGF2]
          Length = 222

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 8/183 (4%)

Query: 22  DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           D + ++ ++  E    LQ +   +VS +   L+  G    +L R ++   Q+P+I +S  
Sbjct: 26  DYICVDAYSGTEARLILQHT---EVSLVLLDLMLPGVSGEQLLRELK-QKQLPVIVLSAK 81

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPIRVFSDGRDP 140
             +   +   + G DD + KP   +E+ AR+   + +R+    +      + +  D    
Sbjct: 82  DGIDDRVALLNEGADDYLCKPFDLKELKARIQVQLRKRMSKQEHAIAVDGVVLLPDFCHL 141

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EENVVESHISKLRK 199
           E+QG    L R E RILE LM +  +   K +I+   Y   D+ + ++  +  HIS +R 
Sbjct: 142 EIQGMKIRLTRHEYRILELLMRDVKRARTKKEIYE--YAWEDDYLGDDKTINVHISNIRS 199

Query: 200 KLR 202
           KL 
Sbjct: 200 KLH 202


>gi|310780606|ref|YP_003968937.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749929|gb|ADO84589.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 221

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 5/162 (3%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA S +P+I ++   S    +   + G DD + KP   + I  +V  + +  + 
Sbjct: 63  EICKEIRAVSNIPVIMMTARDSELDEIQGLELGADDYITKPFSLKLISVKVKKLLKLERD 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  R +       S      + GE   L RRE   LEY   ++G  +++  + + I+G F
Sbjct: 123 TFFRIKDLTFDFKS--YILTIDGETIDLSRREAHALEYFFKHKGIILSREILLNEIWG-F 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   +E  V++ I +LRKKL      D + S R +GY  + N
Sbjct: 180 DFFGDERAVDTLIKRLRKKLGKY--SDYIKSIRGVGYVFNEN 219


>gi|262376905|ref|ZP_06070132.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308250|gb|EEY89386.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 236

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 105/232 (45%), Gaps = 31/232 (13%)

Query: 11  VKDGYIALFGDD---------GVSLEGFNSLEFEEWLQSSA----REDVSAIEAFLIGKG 57
           +KD YI +  D+          + + GF  L+ E+  Q+      +     +  +++  G
Sbjct: 1   MKDDYILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPGG 60

Query: 58  EKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              ++L R ++   + S++P+I ++        +   D+G DD + KP   RE+++R+ A
Sbjct: 61  VSGVDLCRRLKRDESLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKA 120

Query: 115 IYRRLKVSNNRAETGPIRVFSDG--RDPEVQ-----GEVFPLPRRERRILEYLMANRGKR 167
           + RR       A +G   + ++G   DP  Q       +  +   E R+L + M +  + 
Sbjct: 121 VLRRAN-----ALSGEKTIDANGLILDPVSQRVNFGNNILEMGPTEYRLLAFFMTHPERA 175

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
             + Q+   ++G  +  +E+  ++ HI +LRK L    G D  V + R  GY
Sbjct: 176 YTRAQLLDQVWG-GNVYIEDRTIDVHIRRLRKVL-EPYGVDRFVQTVRGTGY 225


>gi|322419001|ref|YP_004198224.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125388|gb|ADW12948.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ RI++   Q   +P+I ++        +  F+ G DD V KP   RE++ RV A+ RR
Sbjct: 62  EVCRILKGSDQTASIPIIMLTAKGEEIDRVVGFEVGADDYVVKPFSTRELMLRVRAVLRR 121

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +A T   G + + ++     V GE   L   E ++L  L    G+  ++  +  
Sbjct: 122 SSEQTPKAATITIGELVIDTERHLVSVCGEEVLLTSTEYKLLMNLAERTGRVQSRELLLQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G +    +   V++H+++LR KL +    + + + R  GY I+
Sbjct: 182 NVWG-YSYVGDTRTVDTHLTRLRTKLGS--AGELIKTVRGFGYKIE 224


>gi|228964165|ref|ZP_04125288.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795515|gb|EEM42999.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 236

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 19/229 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+   
Sbjct: 9   LLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVML--PGQSGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR   
Sbjct: 67  DICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 126

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +++    G   +     +  V G +     +  ++L +   N     +K +I+
Sbjct: 127 QAVPHEQNSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218
             ++G      ++N V  HI KLR+K+ +    DP     + + R LGY
Sbjct: 187 EKVWGAPAYNGDDNTVMVHIRKLREKIEH----DPSKPEYIKTVRGLGY 231


>gi|225570047|ref|ZP_03779072.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
           15053]
 gi|225161517|gb|EEG74136.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
           15053]
          Length = 240

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121
           IR  + +P+I +S        +     G DD V KP +  E++ARV +  RR        
Sbjct: 75  IREKNNIPVIMLSAKTEESDKVIGLSMGADDYVTKPYNTAELMARVKSQLRRYFALGAAA 134

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              SN    TG + +  + +   V GE   L   E +ILE LM + G      QI+S ++
Sbjct: 135 WADSNAVLRTGGLVLDKNTKQVTVDGEPAQLTATEYKILELLMEHPGYVFPAEQIYSRVW 194

Query: 179 GLFDEAVEENVVESHISKLRKKL 201
              D    E  V  HI ++R+K+
Sbjct: 195 Q-EDVYAGEKTVMVHIRRIREKI 216


>gi|47567331|ref|ZP_00238044.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47555952|gb|EAL14290.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 225

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 7/164 (4%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++D  S +  +    +G DD + KP    E++ARV AI RR   
Sbjct: 62  EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120

Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N + E    +   +F D     V+  G+   L +RE  +L +L+ N+   +++  + + 
Sbjct: 121 CNQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V  NVV+ +I  +RKKL+ +     + +    GYS+
Sbjct: 181 VWG-HNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223


>gi|329901628|ref|ZP_08272867.1| Two-component system response regulator QseB [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549057|gb|EGF33661.1| Two-component system response regulator QseB [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 220

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128
           +P++ ++   ++   +   ++G DD + KP   +E+ ARV A+ RR      RA+     
Sbjct: 73  IPVLILTARDAIADCVRSLNAGADDYLVKPFDLQELAARVQALLRR---RAGRADALVRH 129

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + + +      + G    L  RE  +L+ L+   G  ++  Q+   IYG  DE +  N
Sbjct: 130 GALELNTTTHAVTLGGAGVALSAREFAVLQALLERPGAILSVPQLEEKIYGWGDE-IGSN 188

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            VE +I  LRK    KLG   + + R +GY +
Sbjct: 189 TVEVYIHGLRK----KLGAGLIGNVRGVGYMM 216


>gi|325661912|ref|ZP_08150532.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085778|ref|ZP_08334861.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471764|gb|EGC74982.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406701|gb|EGG86206.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 228

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG+ +      E    L  S   D+  ++  L        
Sbjct: 5   ILVVDDEKLIVKGIRFSLEQDGMEVTAAYDGEEALALAKSGEFDLILLDVML--PKLTGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S VP+I ++        +   + G DD V KP +  E+ AR+ AI RR K 
Sbjct: 63  EVCQQVREFSDVPIIMLTAKGDDIDKIMGLEYGADDYVTKPFNILEVKARIKAIIRRTKK 122

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N    G +++  + R   +      L  +E  +LE L  N+ K  ++ ++ + 
Sbjct: 123 DRPEEQKNLIVKGEMKLDCESRRVFIGEREVNLTAKEFDMLELLALNQNKVYSREKLLNL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
           ++G +D   +   V+ HI +LR+K+ +    DP  V +K  +GY
Sbjct: 183 VWG-YDYPGDARTVDVHIRRLREKIESHPS-DPKYVHTKWGVGY 224


>gi|299137815|ref|ZP_07030996.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600456|gb|EFI56613.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 224

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 5/182 (2%)

Query: 41  SAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99
           SA  DV+ ++  L G  G  VLE  R    +  VP++ ++   ++   +   + G DD +
Sbjct: 42  SAPFDVAVLDVMLPGLDGFSVLEQVRA--GNCTVPVLMLTAKDTMPDIVHGLNLGADDYL 99

Query: 100 NKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
            KP   +  +AR+ A+ RR  V    +  TG + + +  R      +   L ++E  ILE
Sbjct: 100 TKPFQIQVFIARIRALGRRGPVLQTKKLITGDLELDTVNRSARRGSDDITLTKKEYAILE 159

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            LM    + V + Q+    +  +D  V ++ V+ ++  LR K+  K     + + R LGY
Sbjct: 160 LLMRRVNQVVTRNQLREVGWS-YDAEVSDSSVDFYMHSLRSKIDIKGHDSLIRTVRSLGY 218

Query: 219 SI 220
           S+
Sbjct: 219 SM 220


>gi|295689164|ref|YP_003592857.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295431067|gb|ADG10239.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 237

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 7/166 (4%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ R IR  S+VP++ ++        +   D G DD V KP    E++AR+ AI RR+ 
Sbjct: 70  IEVLRRIRRASKVPVLLLTARGDEIDRIAGLDLGADDYVPKPCSPGELVARIRAILRRVL 129

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +N+    G ++++   R  +  G+   L   E  +LE L  + G+ V+K Q+  
Sbjct: 130 TNKDPTANDMISKGRLKLWPASRQAQWDGQPIELTGTEFSLLEELARHAGQLVSKDQLSL 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              G      +   ++ HIS +R+KL   + G   + S R  GY +
Sbjct: 190 NALGRPLTPYDRR-IDVHISSIRQKLGVRRDGSSSILSVRSQGYQL 234


>gi|262279610|ref|ZP_06057395.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259961|gb|EEY78694.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
          Length = 231

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130
           +P++ ++   +L   L  F +G DD + KP    E++ R+ A+ +R   +V++++ +   
Sbjct: 77  IPVLMLTARDTLDDKLKGFTAGTDDYLVKPFDFNELVMRIRALIKRAAGEVTHHKIQIHD 136

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + + S  +     G    LP  + ++L+ LM    K V K ++   ++G  DE  E + +
Sbjct: 137 LILDSATQTVIRAGNNIELPPIQFKLLKILMRQSPKVVTKQELMMELWG--DEEPESDAL 194

Query: 191 ESHISKLRKKLRNKLGFDP 209
            SHI  LRK +     FDP
Sbjct: 195 RSHIYNLRKMVDKP--FDP 211


>gi|242241118|ref|YP_002989299.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dickeya dadantii Ech703]
 gi|242133175|gb|ACS87477.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dickeya dadantii Ech703]
          Length = 223

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L  ++R  S VP++ ++    L   +   + G DD + KP    E++ R+  + RR  V
Sbjct: 61  QLIEMLRKKSDVPVLFLTARDQLHDRIRGLELGADDYLIKPFSFTELVLRIRTLLRRGVV 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      +R+    R    Q  V PL  +E  +L  L+   G+ +++T I S ++ +
Sbjct: 121 READHYAVADLRLDVLRRKATRQEVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWDM 180

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            FD   + NVV+  + +LR K+        + + R +GY
Sbjct: 181 NFDS--DTNVVDVAVKRLRAKIDKPFDIKLIHTVRGIGY 217


>gi|226951189|ref|ZP_03821653.1| heavy metal response regulator [Acinetobacter sp. ATCC 27244]
 gi|226838068|gb|EEH70451.1| heavy metal response regulator [Acinetobacter sp. ATCC 27244]
          Length = 235

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 5/159 (3%)

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSN 123
           I ++   +P++ +S    ++  +   D G DD + KP    E+LAR+ ++ RR   K  +
Sbjct: 74  IRKSGKTMPILFLSARDQIEDRVKGLDLGADDYLVKPFAFAELLARIKSLLRRGQQKEDS 133

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182
           N      + +    R     G+   L  +E  ++E  M  RG+ + +  I S I+ + FD
Sbjct: 134 NLITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIWDMNFD 193

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 194 S--DTNVVEVAIKRLRSKIDSNFSPKLIQNIRGMGYVLE 230


>gi|209517611|ref|ZP_03266449.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501907|gb|EEA01925.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 240

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 3/133 (2%)

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAET 128
           ++ P++ +S   ++   +    +G DD + KP    E+ AR+ A+ RR   S   N    
Sbjct: 85  TETPVLILSALSAVDERVRGLRAGGDDYLTKPFDSLELTARLNALLRRRSSSEQANVLSV 144

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +          GE   L  RE  +L+YLM +  + V +  +F +++  +   V  N
Sbjct: 145 GDLVLDMGTHRVRRAGESIELKPREYELLKYLMLHTEQPVTRAMLFESVWN-YHFNVHTN 203

Query: 189 VVESHISKLRKKL 201
           V++ HI +LR+K+
Sbjct: 204 VIDMHIGQLRRKI 216


>gi|254253751|ref|ZP_04947068.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124898396|gb|EAY70239.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 292

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 74/142 (52%), Gaps = 4/142 (2%)

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RR 118
           +E+ + IR+  + VP++ +++ P+    +   D+G DD ++  +   E+LAR+ A+  RR
Sbjct: 85  IEVLKTIRSRGETVPVMTLAE-PTDDACVRSLDNGADDCLHSALEMVEVLARIRAVLRRR 143

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +R  +  + +  D R     G   PL  RE  ++  L+   G  +++ Q+   +Y
Sbjct: 144 AGHATSRIGSDALSLDLDTRTLCFMGTAAPLSVREFALMHALLERPGLLLSRAQLEDRLY 203

Query: 179 GLFDEAVEENVVESHISKLRKK 200
           G   E VE N ++  I ++RK+
Sbjct: 204 GWGKE-VESNALDVLIHQIRKR 224


>gi|90418271|ref|ZP_01226183.1| response regulator receiver, transcriptional regulatory protein
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337943|gb|EAS51594.1| response regulator receiver, transcriptional regulatory protein
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 246

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 26/180 (14%)

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           GE  +EL R +R + Q P++ ++     +  ++  ++G DD + KP   RE+L RV  I 
Sbjct: 80  GESGIELVRSLRTNRQAPVLMLTARSETEHRIEGLEAGADDYLAKPFDPRELLLRVNNIL 139

Query: 117 RR------LKVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR       K+ + R   GP   FS  R + +  GE+  L  RE+ ++     N G+ + 
Sbjct: 140 RRGSQAPIQKLEHIR--FGPF-TFSLSRCELKRGGEIIRLTDREKAMMSQFAGNPGETIP 196

Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSIDWN 223
           +  +      L DE  V E  V+  I++LR+K+      DP +     + R +GY ++ +
Sbjct: 197 RQDL------LGDETEVGERTVDVQINRLRRKIEG----DPANPLWLQTVRGIGYRLNTD 246


>gi|30260446|ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525530|ref|YP_016879.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183288|ref|YP_026540.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|52144971|ref|YP_081859.1| response regulator [Bacillus cereus E33L]
 gi|118476026|ref|YP_893177.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165873352|ref|ZP_02217952.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634226|ref|ZP_02392548.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640090|ref|ZP_02398357.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170687705|ref|ZP_02878920.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709229|ref|ZP_02899651.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177655756|ref|ZP_02937031.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567377|ref|ZP_03020291.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196041101|ref|ZP_03108397.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046240|ref|ZP_03113467.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|227812937|ref|YP_002812946.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228925516|ref|ZP_04088608.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931762|ref|ZP_04094662.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944068|ref|ZP_04106450.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229119926|ref|ZP_04249183.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229182659|ref|ZP_04309903.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229600613|ref|YP_002864895.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686665|ref|ZP_05150523.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724733|ref|ZP_05186516.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254735437|ref|ZP_05193145.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744181|ref|ZP_05201863.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756033|ref|ZP_05208064.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761683|ref|ZP_05213701.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253767|gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500678|gb|AAT29354.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177215|gb|AAT52591.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|51978440|gb|AAU19990.1| response regulator [Bacillus cereus E33L]
 gi|118415251|gb|ABK83670.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164710909|gb|EDR16486.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511901|gb|EDR87280.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530540|gb|EDR93255.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125862|gb|EDS94767.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170668232|gb|EDT18980.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172079985|gb|EDT65087.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561504|gb|EDV15475.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196022985|gb|EDX61665.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028036|gb|EDX66647.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227003315|gb|ACP13058.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228600828|gb|EEK58404.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228663540|gb|EEL19123.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228815618|gb|EEM61857.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827911|gb|EEM73645.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834154|gb|EEM79699.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229265021|gb|ACQ46658.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 233

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           IR   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR    N  A
Sbjct: 69  IREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKMNGFA 128

Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E G +++        V+GE   L  RE  ILE L  N G   +  QI+  ++ 
Sbjct: 129 IQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYEKVWN 188

Query: 180 LFDEAVE-ENVVESHISKLRKKL 201
             + + + +N V  HI K+R+K+
Sbjct: 189 --ERSFQSDNTVMVHIRKVREKI 209


>gi|66046603|ref|YP_236444.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257310|gb|AAY38406.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|330970771|gb|EGH70837.1| heavy metal response regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 229

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 17/195 (8%)

Query: 36  EWLQSSA---------REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           +W Q  A         R D+  ++  L G  G +++E   ++RA   VP++ ++    LQ
Sbjct: 28  DWTQHGADGLHLALENRYDLIVLDVMLPGIDGWQIIE---VLRARQDVPVLFLTARDQLQ 84

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQG 144
             +   + G DD + KP    E+L R+  I RR  V   +      + +    R    Q 
Sbjct: 85  DRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVVREADHFHLADLELDLLRRRVTRQQ 144

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRN 203
           +V  L  +E  +L  L+   G  +++ QI S ++ + FD   + NVV+  I +LR K+  
Sbjct: 145 QVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWDMNFDS--DTNVVDVAIKRLRSKVDL 202

Query: 204 KLGFDPVDSKRFLGY 218
                 + + R +GY
Sbjct: 203 PYPVKLIHTVRGIGY 217


>gi|28870763|ref|NP_793382.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|71737671|ref|YP_275453.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|213968943|ref|ZP_03397083.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|289625628|ref|ZP_06458582.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646477|ref|ZP_06477820.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298487733|ref|ZP_07005774.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|301382821|ref|ZP_07231239.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302062977|ref|ZP_07254518.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302134596|ref|ZP_07260586.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|302187955|ref|ZP_07264628.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae 642]
 gi|28854011|gb|AAO57077.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|71558224|gb|AAZ37435.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|213926242|gb|EEB59797.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|298157825|gb|EFH98904.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320323963|gb|EFW80047.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320328099|gb|EFW84104.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330869074|gb|EGH03783.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330875974|gb|EGH10123.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330876559|gb|EGH10708.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
 gi|330953840|gb|EGH54100.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           Cit 7]
 gi|330986579|gb|EGH84682.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331015882|gb|EGH95938.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 229

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 17/195 (8%)

Query: 36  EWLQSSA---------REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85
           +W Q  A         R D+  ++  L G  G +++E   ++RA   VP++ ++    LQ
Sbjct: 28  DWTQHGADGLHLALENRYDLIVLDVMLPGIDGWQIIE---VLRARQDVPVLFLTARDQLQ 84

Query: 86  TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQG 144
             +   + G DD + KP    E+L R+  I RR  V   +      + +    R    Q 
Sbjct: 85  DRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVVREADHFHLADLELDLLRRRVTRQQ 144

Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRN 203
           +V  L  +E  +L  L+   G  +++ QI S ++ + FD   + NVV+  I +LR K+  
Sbjct: 145 QVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWDMNFDS--DTNVVDVAIKRLRSKVDL 202

Query: 204 KLGFDPVDSKRFLGY 218
                 + + R +GY
Sbjct: 203 PYPVKLIHTVRGIGY 217


>gi|82699504|ref|YP_414078.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|189023833|ref|YP_001934601.1| transcriptional regulator [Brucella abortus S19]
 gi|237815071|ref|ZP_04594069.1| Transcriptional activator protein copR [Brucella abortus str. 2308
           A]
 gi|260545665|ref|ZP_05821406.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|82615605|emb|CAJ10592.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|189019405|gb|ACD72127.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|237789908|gb|EEP64118.1| Transcriptional activator protein copR [Brucella abortus str. 2308
           A]
 gi|260097072|gb|EEW80947.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
          Length = 235

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 13/156 (8%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128
           + P++ +S    +   +    +G DD + KP    E+LARV  + RR   S    +T   
Sbjct: 72  ETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRR--SSPREVDTIYR 129

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186
            G + +         Q     L  RE R+LEYLM + G+ V +T +   ++   FD   +
Sbjct: 130 VGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP--Q 187

Query: 187 ENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            NV++ HIS+LR K+    GFD   + + R  GY +
Sbjct: 188 TNVIDVHISRLRSKIEK--GFDEPLLHTVRGAGYML 221


>gi|238797820|ref|ZP_04641313.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia mollaretii ATCC 43969]
 gi|238718348|gb|EEQ10171.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia mollaretii ATCC 43969]
          Length = 230

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 25/222 (11%)

Query: 8   RALVKDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLEL 63
           RAL + G+   IA  G DG+ L    +LE++         D   ++  L G  G +VL  
Sbjct: 18  RALTEQGFTVDIAATGTDGLYL----ALEYDY--------DTIVLDVMLPGMDGYRVL-- 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            + +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR     
Sbjct: 64  -KGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELIARIQALLRRRPSDG 122

Query: 124 ---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     + +    R     GE   L  +E  +L  L  ++G+ ++K  I   ++ +
Sbjct: 123 ADVTQLHINDLHLDLLARRVTRGGERLELTAKEFALLSLLARHQGEILSKMMIAEQVWDM 182

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 183 NFDS--DANVVEVAIKRLRAKIDAPYSLKLLHTVRGMGYVLE 222


>gi|317122468|ref|YP_004102471.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592448|gb|ADU51744.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 255

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 4/151 (2%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
           Q P++ ++   S    +   + G DD V KP   RE++AR+ A+ RR      R + GPI
Sbjct: 102 QTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRR--TEGRRQQVGPI 159

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +   G +    G+   L   E ++L  L +  G+  ++ ++   ++G  D   +   V+
Sbjct: 160 VIDYAGHEVYRDGQRVQLTPTEFKLLATLASEPGRAFSRQELLDRVWG-EDAFGDPRTVD 218

Query: 192 SHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            H+  LR+KL RN    + + + R  GY ++
Sbjct: 219 VHVRHLREKLERNPSQPEWILTVRGHGYKLN 249


>gi|300854103|ref|YP_003779087.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434218|gb|ADK13985.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 219

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 3/159 (1%)

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR     P++ ++        +     G DD + KP    E+ ARV A  RR K
Sbjct: 60  FELCEKIRDIVDCPILFLTAKTMENDVMFGLGIGGDDYIKKPFSTGELRARVNAHLRREK 119

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N      ++     ++  ++ +  P+ + E  I E+L+ ++G+   K QI+ A+YG
Sbjct: 120 REKHNMISISGMKFNLASKEIIIEDKKVPMTKSEYAICEFLVRSKGQVFTKEQIYEAVYG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              E+    + E HI  +R KL       P+ +   +GY
Sbjct: 180 YERESDSSGIAE-HIKNIRAKLA-IFDLSPIKTVWGIGY 216


Searching..................................................done


Results from round 2




>gi|254780526|ref|YP_003064939.1| putative transcription regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040203|gb|ACT56999.1| putative transcription regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 223

 Score =  304 bits (779), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV
Sbjct: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK
Sbjct: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL
Sbjct: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN
Sbjct: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223


>gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 228

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 102/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +       F  +G  ++  N+ +      S+   ++  ++  L   G+   
Sbjct: 7   ILIIDDDKNICQLLNLYFTKEGFEVDIANNGKEGMSHFSNNPPNIVILDIMLP--GKDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S +P+I ++        +   + G DD V KP   +E++ARV A+ RR   
Sbjct: 65  DICREIRRMSDIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVLRRYNQ 124

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +NN      + +  +    + Q +   LP +E  +L +L ++  K   + Q+   ++
Sbjct: 125 DNDANNVIVYPNLVIDKNTMLVKYQKKELELPPKEFELLYFLASHPNKVYTREQLLEQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   +   V+ H+++LR+K+ ++     + +   +GY  + 
Sbjct: 185 G-FDYYGDSRTVDVHVNRLREKIGSENDPWKISTVWGVGYKFEV 227


>gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
 gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
          Length = 256

 Score =  269 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 103/227 (45%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G +LE               +  +  ++  L   G    
Sbjct: 32  ILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLP--GIDGF 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R+IR  S VP++ ++   S    ++  ++G DD ++KP   RE+LAR+ A+ RR + 
Sbjct: 90  ELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149

Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N++ ET      G + +F +       G       +E  +  +++ NR +  ++ Q+  
Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G +D       V+ HIS LR+K+  +      + + R  GY  +
Sbjct: 210 KVWG-YDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFE 255


>gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 231

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 8/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +++        +G ++      E       S    +  ++  L       
Sbjct: 5   LILIVDDEEHIRELVRLYLEKEGFTVALAADGEEAVQKAKSTTPQLIILDLMLP--KLDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R +R  S+VP+I ++        +   + G DD + KP   RE++ARV AI RR  
Sbjct: 63  WDVCREVRKFSEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRRAT 122

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +      + +    R+  V      L  +E  +L +L  + GK   + Q+ +
Sbjct: 123 PEEQTDTEDVLTFPGLAINHSSREVHVDDREVTLTPKEFDLLWFLATHPGKVFTREQLLT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           A++G +D   +   V++HI +LR+K+        V +   +GY  + 
Sbjct: 183 AVWG-YDYYGDLRTVDTHIKRLREKVERDGNTPHVKTIWGVGYKFEV 228


>gi|147679020|ref|YP_001213235.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146275117|dbj|BAF60866.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 228

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  LV+D        +G  +E     E        A  D+  ++  L        
Sbjct: 6   ILVVDDEELVQDLIRLYLEKEGFRVEVARDGEEALAKLGFANPDLVILDIMLP--KMDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +   + G DD V KP    E++AR+ A+ RR + 
Sbjct: 64  AVCREIRKTMATPIIMLTAKGEEFDRVLGLELGADDYVCKPFSPIELVARIKAVLRRARG 123

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S        + V   G   EV G    L  +E  +L +L ++ G+  ++ Q+   ++
Sbjct: 124 GRDSPKVLSFPGLVVDYSGHRVEVDGREVALAPKEFELLWFLASHPGQLYSREQLLKNVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +D   +   V++HI +LR+KL        + +    GY  + 
Sbjct: 184 -AYDYLGDTRTVDTHIKRLREKLEAGSEKRYIRTVWGRGYKFEV 226


>gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 228

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  LV++        +G ++E     E       S   D+  ++  L  K     
Sbjct: 5   ILVVEDEELVQELLRLYLEKEGYAVEAAWDGEEALSKFRSNNPDLVILDIMLPKK--DGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S  P+I ++        +   D G DD V KP    E++ARV A+ RR  +
Sbjct: 63  TVCREIRAMSNAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVLRRTSL 122

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +N           + V  D    EV G    L  +E  +L +L ++ GK  ++ Q+ S +
Sbjct: 123 ANQDGNRVLFYPGLTVNYDSHLVEVDGRRVSLTPKEFELLWFLASHPGKVYSREQLLSYV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +  +D   +   V++HI +LR+KL + +    + +    GY  + 
Sbjct: 183 WD-YDYLGDPRTVDTHIKRLREKLESGVKQRYIRTVWGRGYKFEV 226


>gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 228

 Score =  267 bits (683), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G S E     +  +      + D+  ++  L       +
Sbjct: 8   ILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQGAFFEYKPDLVLLDVMLPH--MDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S+ P+I ++        +   + G DD + KP   +E++AR+ A+ RR  V
Sbjct: 66  DVLKWIRKESETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNV 125

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N      +   + +  +      +     +P +E  +L YL +N  K   + Q+   ++
Sbjct: 126 ENEDKDVLKFKSLTIDINSYIVVYKENEIKMPPKEFELLYYLASNCNKVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL+   G +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLQ--GGPNWQIETVWGVGYKFEV 227


>gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 230

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 104/227 (45%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G  LE          +    +  +  ++  L   G    
Sbjct: 6   ILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPSLVILDVMLP--GMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R+IRA S VP++ ++   S    ++  + G DD ++KP   +E+LAR+ A+ RR ++
Sbjct: 64  ELCRLIRAESSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRSQM 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N++ E         + +F +       GE      +E  +L +++ NR +  ++ Q+  
Sbjct: 124 QNSQPEPVSGLKIDNLEIFFERHLVMRDGEALDFSPKEFDLLSFMVQNRCRVFSREQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G +D       V+ HIS LR+K+  +      + + R  GY  +
Sbjct: 184 KVWG-YDYPGGTRTVDVHISWLRQKIETDPSRPRHLITVRGTGYKFE 229


>gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 230

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 100/231 (43%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V +        +G  +    +        +S + D+  ++  +       L
Sbjct: 4   ILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKANSTKPDLIVLDLMMPE--IDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR HS+VP+I ++        +   + G DD + KP + RE++AR+ A+ RR+  
Sbjct: 62  EVCRQIRMHSRVPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVLRRVSD 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      +   + +       ++QG   P   +E  +L  L +N G+   + Q+  
Sbjct: 122 ISTDSGKQQVLKYNGLEINIMDFTVKLQGREIPFTPKELELLWLLASNPGRVYTREQLLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL---RNKLGFDPVDSKRFLGYSIDWN 223
            ++G +D   +   V++HI ++RKK+        FD + +   +GY  + +
Sbjct: 182 KVWG-YDYFGDSRTVDTHIKRIRKKIGSAEESTSFD-IKTVWGVGYKFEVS 230


>gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 237

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +      E       S   D+  ++  L        
Sbjct: 10  ILIVDDEHRIREVLRKYLVAEGFGVGEAADGEAALAEIRSGHWDLVILDIMLP--KIDGW 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++        +   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 68  EVCREIRKISDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRRARK 127

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+    +   G + +  + R   V G+   L  +E  +L  L  + GK   + ++   ++
Sbjct: 128 SSTPGKQIVLGNVVIEPEARTVTVGGKTLALTPKEFDLLLTLARSPGKVFRREELLDLVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V++H+++LR+KL        + +   +GY ++ 
Sbjct: 188 G-YDFYGDSRTVDTHVARLREKLNQAGAPPLIATVWGVGYKLEV 230


>gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 228

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G S E     +  +      + D+  ++  L       +
Sbjct: 8   ILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQTAFYEYKPDLVLLDVMLPH--MDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR   + P+I ++        +   + G DD + KP   +E++AR+ A+ RR  V
Sbjct: 66  DVLKWIRKECETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNV 125

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N      +   + +  +      +     +P +E  +L YL +N  K   + Q+   ++
Sbjct: 126 ENEDKDVLKFKSLTIDINSYIVVYKDNEIKMPPKEFELLYYLASNCNKVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL+   G +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLQ--GGPNWQIETVWGVGYKFEV 227


>gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 225

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G ++ G  + E           D   ++  L   G    
Sbjct: 6   ILVADDEPELIEILTDYLEAEGYAVTGVETGEEAVARVRDGAFDCVVLDVMLP--GMSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IRA S VP++ +S        +     G DD V KP    E++ARV A+ RR + 
Sbjct: 64  EACRAIRAFSDVPILFLSARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRRYRP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S  +   GP+ +   G      G    +  +E  +L +L  + G+  ++ Q++  ++G F
Sbjct: 124 SAEQWRFGPLTIDPKGYRVWRDGREVAMTAKELELLIFLARHPGQVFSREQLYDRVWGDF 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
               +   V  HI+++R+K+         + + R LGY  
Sbjct: 184 ---GDPRTVTVHINRIREKIEADPSRPQFIQTVRGLGYRF 220


>gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++D        +G  ++  +       L  +   D+  ++  L   G   L
Sbjct: 4   ILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHYDLVLLDLMLP--GVDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  SQVP+I ++        +   + G DD + KP   RE++ARV A+ RR+  
Sbjct: 62  TICKEIRKFSQVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVLRRMAP 121

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  + R   V+G+   L  RE  +L +L +  G+  ++ Q+ 
Sbjct: 122 GTVNLPQPERLLTFPDLEINPESRVVVVKGQEISLTPREFDLLLFLASFPGRAFSREQLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + ++G +D   +   V++HI++LR KL       P+ +   +GY  + 
Sbjct: 182 TNVWG-YDYFGDLRTVDTHINRLRDKLSVNGARQPIATVWGVGYKFEV 228


>gi|226939099|ref|YP_002794170.1| PhoB [Laribacter hongkongensis HLHK9]
 gi|226714023|gb|ACO73161.1| PhoB [Laribacter hongkongensis HLHK9]
          Length = 229

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++         G  +    S E  + L  +A  D+  ++  L   G+  +
Sbjct: 5   ILLVEDEPAIQELIAFNLAQSGHQVLRAASAEAAQTLVKNALPDLVLLDWMLP--GQSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R +R+     +VP+I ++     Q  +   ++G DD + KP   RE+ AR+ A+ RR
Sbjct: 63  EFARRLRSDERTREVPIIMLTARSDEQDKIAGLETGADDYITKPFSPRELQARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  E   +R+          G+   L   E R+L + M +  +  +++Q+   
Sbjct: 123 RAPQMTDDAVEVQGLRLDPATHRVAAGGQPLDLGPTEFRLLHFFMTHPERVHSRSQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LR  L        V + R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRSALEPSGHDALVQTVRGTGYRF 225


>gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 246

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G      +  +  + +      D+  ++  L       +
Sbjct: 26  ILIVDDDQNICEVIKMYLESAGFDTRVCHDGKESQSIFIEYNPDLVLLDIMLPS--MDGI 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR   + P+I ++        +   + G DD + KP   +E+LARV A+ RR   
Sbjct: 84  DVLKWIRKEHETPVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRRFNS 143

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             VS    +   + +  D       G+   +P +E  +L YL +N+ +   + Q+   ++
Sbjct: 144 DNVSKEALQFNGLTIDIDSYTVIYNGKEIKMPPKEFELLYYLASNKNRVFTREQLLCEVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL     +  +++   +GY  + 
Sbjct: 204 G-YDYPGDSRTVDVHIKRLREKLEEGSNWQ-IETVWGVGYKFEV 245


>gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 232

 Score =  264 bits (675), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 100/228 (43%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +G  +   N  E      ++ + D+  ++  +       L
Sbjct: 6   ILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPR--MDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P++ ++        +   + G DD + KP   +E++AR+ A+ RR + 
Sbjct: 64  EVCRRIRKAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++         +E   +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+ 
Sbjct: 124 TSAAAESTEGVSEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230


>gi|147676580|ref|YP_001210795.1| hypothetical protein PTH_0245 [Pelotomaculum thermopropionicum SI]
 gi|146272677|dbj|BAF58426.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 357

 Score =  264 bits (675), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 104/231 (45%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++           L +  + D+  ++  +   G    
Sbjct: 129 ILVVDDERKIREVVRMYLENEGFAVGEATDGREALNLLTGGKWDLLILDLMMP--GVDGW 186

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  + +P+I ++   +    +   + G DD V KP   RE++ARV A+ RR ++
Sbjct: 187 SVCREVRKTTALPIIMLTARDAEVDRIVGLELGADDYVVKPFSPRELVARVKAVLRRSQI 246

Query: 122 SNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   A+ G         + +  + R   V  +   L  +E  +L  +  +  +   + ++
Sbjct: 247 APPAAQDGKPVVLNYPGLSINPESRLVLVNEQPVNLTPKEYDMLYLMARSPSRTFTREEL 306

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
             +++G +D   +   V++H+++LR KL+   G+   + +   +GY  + +
Sbjct: 307 IESVWG-YDYFGDTRTVDTHVNRLRDKLQKASGYRSYISTVWGVGYKFEVD 356


>gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
          Length = 232

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 99/228 (43%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +G  +   N  E      ++ + D+  ++  +       L
Sbjct: 6   ILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPR--MDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P++ ++        +   + G DD + KP   +E++AR+ A+ RR + 
Sbjct: 64  EVCRRIRKAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++          E   +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+ 
Sbjct: 124 TSAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230


>gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51]
 gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 104/226 (46%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   +   +         +   D+  ++  +   G    
Sbjct: 3   ILVVDDDERIREIVRLYLEAEGFETDEAENGNIALEKVRNGTFDLIILDLMIP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +++R  +Q+P+I ++        +  FD G DD + KP   RE+ ARV A+ RRL  
Sbjct: 61  TVCKVLRKETQIPIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRRLDG 120

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++          +    R+  V+G+   L  +E  +L  L  N G+   + Q+  +++
Sbjct: 121 ETSKEHLITFTGFTINQITREIMVEGKEVKLTTKEFDLLLVLAKNPGQIFTRDQLLDSVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
             FD   +   V++HI++LR K  +++GF D + + R +GY  ++N
Sbjct: 181 D-FDYCGDSRTVDTHINRLRSKFDSQVGFSDFIQTVRGVGYKFEYN 225


>gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 230

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + +        +G  +    +      +  +   ++  ++  L   G    +
Sbjct: 10  LVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLP--GADGWQ 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I +S        +   + G DD + KP   +E++ARV A+ RR +  
Sbjct: 68  VCREIRKISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYEHK 127

Query: 123 NNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +      + +       +V G+    P +E  +L +L +N  K   + Q+   ++G
Sbjct: 128 DSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V+ HI +LR+KL ++     + +   +GY  + 
Sbjct: 188 -YDFYGDSRTVDVHIKRLREKLDSEGQNWQLKTVWGVGYKFEV 229


>gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + +        +G  +    +      +  +   ++  ++  L   G    +
Sbjct: 8   LVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLP--GADGWQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I +S        +   + G DD + KP   +E++ARV A+ RR +  
Sbjct: 66  VCREIRKISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYEHK 125

Query: 123 NNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +      + +       +V G+    P +E  +L +L +N  K   + Q+   ++G
Sbjct: 126 DSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V+ HI +LR+KL ++     + +   +GY  + 
Sbjct: 186 -YDFYGDSRTVDVHIKRLREKLDSEGQNWQLKTVWGVGYKFEV 227


>gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555]
 gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016]
 gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM
           555]
 gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 228

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  ++  N  +  E      + D+  ++  L       +
Sbjct: 8   ILIVDDDENICEVIKMYVESAGYEVQVANDGKSAETTFLEYKPDLVILDIMLPN--IDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR   + P+I ++        +   + G DD + KP   +E+LAR+ A+ RR  V
Sbjct: 66  DVLKWIRKDYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRRYSV 125

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N   E      + +  +      + E   +P +E  +L YL  N+ +   + Q+   ++
Sbjct: 126 DNENKEVLKFEQLTIDINSYTVTYRNEDIKMPPKEFELLYYLANNKNRVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           G +D   +   V+ H+ +LR+KL+   G +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHVKRLREKLQ--GGPNWQIETVWGVGYKFEV 227


>gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT]
 gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. GT]
          Length = 230

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 104/227 (45%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G  LE          +    +  +  ++  +   G    
Sbjct: 6   ILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIP--GIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R+IRA S VP++ ++   S    ++  ++G DD ++KP   +E+LAR+ A+ RR ++
Sbjct: 64  ELCRLIRAESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRRSQM 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N+ AE       G + +F +       G       +E  +  +L+ NR +  ++ Q+  
Sbjct: 124 QNSPAEPAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G +D       V+ HIS LR+K+  +      + + R  GY  +
Sbjct: 184 KVWG-YDYPGGTRTVDVHISWLRQKIEADPSKPRHLITVRGTGYKFE 229


>gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 228

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++  +  +  +    +   ++  ++  L   G   +
Sbjct: 8   ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLP--GIDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR  S VP+I ++        +   + G DD V KP   +E+LARV A+ RR   
Sbjct: 66  EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N       + + ++       GE    P +E  +L YL +N+ K   + Q+   ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL    G D  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFEV 227


>gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 232

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   N  E      +  + D+  ++  +       L
Sbjct: 6   ILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKFNQVKPDMVLLDVMMP--KMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR     P++ ++        +   + G DD + KP   +E++AR+ A+ RR   
Sbjct: 64  EVCRRIRKAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +    E   +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+ 
Sbjct: 124 TTAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230


>gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 232

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   N  E      +  + D+  ++  +       L
Sbjct: 6   ILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKFNQLKPDMVLLDVMMPR--MDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR     P++ ++        +   + G DD + KP   +E++AR+ A+ RR   
Sbjct: 64  EVCRRIRKLGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCTV 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + S    E   +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+ 
Sbjct: 124 TTSQTESSEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230


>gi|260587419|ref|ZP_05853332.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331083699|ref|ZP_08332810.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542286|gb|EEX22855.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330403910|gb|EGG83462.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 234

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E      SS   ++  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFDTHIVNDGEAALNAFSSFAPNLILLDLMLP--GMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR  S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRQKSNVPIIMLSAKGEIFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRYQP 124

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S    E   + +          G+   +P +E  +L +L ++  +   + Q+
Sbjct: 125 NVAPATQPSGKYVEYPDLAINLTNYSVIYYGKQLDMPPKELELLYFLASSPNQVFTREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 LDHIWG-YEYIGDTRTVDVHIKRLREKIKDHPSWAL-STVWGIGYKFEV 231


>gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 296

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    +   EE L+   +  +  +   L+  G    
Sbjct: 66  ILIVEDEESYREPLVYQLTREGYDVSA--AATGEEGLELFTKGGIDLVLLDLMLPGIDGT 123

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 124 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 183

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 184 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 243

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 244 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 292


>gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 228

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++  +  +  +    +    +  ++  L   G   +
Sbjct: 8   ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPSLVVLDMMLP--GIDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR  S VP+I ++        +   + G DD V KP   +E+LARV A+ RR   
Sbjct: 66  EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N       + + ++       GE    P +E  +L YL +N+ K   + Q+   ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL    G D  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFEV 227


>gi|218134831|ref|ZP_03463635.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990216|gb|EEC56227.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
           43243]
          Length = 231

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E      +  R D+  ++  L   G    
Sbjct: 7   ILIVDDDENIAELIALYLTKECFETMTVHDGEAALAAVTEFRPDLMILDLMLP--GMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R ++ +P+I +S        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREVRRNNNLPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       E   + +          G    +P +E  +L +L ++  +   + Q+ 
Sbjct: 125 PKADTAADAKTVEYPGLSINLANYSVIYDGTPVEMPPKELELLYFLASSPNQVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+G ++   +   V+ HI +LR+K+++      + +   +GY  + 
Sbjct: 185 DHIWG-YEYLGDTRTVDVHIKRLREKIKDH-EQWSIATVWGIGYKFEV 230


>gi|89097745|ref|ZP_01170633.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
 gi|89087604|gb|EAR66717.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
          Length = 233

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 102/236 (43%), Gaps = 25/236 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-------LEGFNSLEFEEWLQSSAREDVSAIEAFLI 54
            ++++D   V       F  +G +        EGF++   E W       D+  ++  L 
Sbjct: 3   ILVVEDNESVCSMLEMFFMKEGYTGRFVHSGQEGFDAFNKESW-------DLVIVDWMLP 55

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                 + L R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A
Sbjct: 56  V--MDGVTLCRKIRELSTVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLALMARIKA 113

Query: 115 IYRRLKVSNNRAE------TGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKR 167
           + RR +  +++ E      +   ++  D R+   +G+    L  +E  +L Y + N  + 
Sbjct: 114 VTRRYQADSSKQEEANYISSQFFKISKDTREVLYKGQPLNNLTPKEFDLLYYFVKNPRQV 173

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++ Q+   ++G +    +E  V+ HI +LRKK+        + +   +GY  D +
Sbjct: 174 FSREQLLDRVWG-YQFYGDERTVDVHIKRLRKKIGT-TSQPFIHTVWGIGYKFDES 227


>gi|224823455|ref|ZP_03696564.1| two component transcriptional regulator PhoB, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224603910|gb|EEG10084.1| two component transcriptional regulator PhoB, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 229

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++         G  +   ++ E    L  +A  D+  ++  L   G   +
Sbjct: 5   ILLVEDEPAIQELIAFNLTQAGHHVLRASTAEAALMLVKNALPDLVLLDWMLP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + +RA     QVP+I ++     Q  +   ++G DD + KP   RE+LAR+ A+ RR
Sbjct: 63  DIAKRLRADERTRQVPIIMLTARSDEQDKIVGLETGADDYITKPFSPRELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  E   +R+          G    L   E R+L + M +  +  ++ Q+   
Sbjct: 123 RAPQMTDDAVEVKGLRLDPATHRVSTDGNPIDLGPTEFRLLHFFMTHPERVHSRAQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LR  L        + + R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRSSLEATGHDGLIQTVRGTGYRF 225


>gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 227

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 95/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++  +  +    + +    ++  ++  L        
Sbjct: 6   ILVVDDEEKIVDLVKLYLEKEGFKVDEAHDGQQALDMIAKGEYNLIILDLMLPV--IDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + + +R  S +P+I ++        +  F+ G DD V KP   RE++ARV A+ RRL  
Sbjct: 64  TVCKEVRKKSDIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLRRLGP 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K      E   + +  + R     G+   L  +E  +L +L  N+ K   + ++   ++G
Sbjct: 124 KGPEQTLEFPGLVIEPESRTVRADGKEVALTPKEFDLLYFLAKNKEKVFTREKLLEEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D       V++HI +LR+KL        + +   +GY  + 
Sbjct: 184 -YDFFGSLRTVDTHIKQLREKLGRSKAASYITTVWGVGYKFEV 225


>gi|295094559|emb|CBK83650.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 244

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 91/241 (37%), Gaps = 24/241 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    E   S      L      D+  ++  L   G    
Sbjct: 6   ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLP--GMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IR  S  P+I +S    +   +     G DD + KP    E++ARV A+ RR  +
Sbjct: 64  QVCTEIRKTSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAM 123

Query: 122 SNNR--------------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
           + +                      E   + V         +G    +P +E  IL +L 
Sbjct: 124 TESAQKQPQSAAYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLA 183

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   + Q+   ++G ++   +   V+ HI +LR+KL N   +  + +   +GY  +
Sbjct: 184 SRPNQVFTREQLLDKLWG-YEYVGDTRTVDVHIKRLREKLNNNHNWS-IATVWGIGYKFE 241

Query: 222 W 222
           W
Sbjct: 242 W 242


>gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 233

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  E      +S R D+  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELIALYLTKECFETKIVNDGEEALREFASFRPDLIILDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I +S        +   + G DD + KP   +E++ARV A+ RR +V
Sbjct: 65  QVCREIRHTSDVPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVRAVLRRFQV 124

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + V          G    +P +E  +L +L A+  +   + Q+ 
Sbjct: 125 KQPSPSSSEKCVTYPDLTVNLTNYAVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+G ++   +   V+ HI +LR+K+++   +  + +   +GY  + 
Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKDNPHWS-IATVWGIGYKFEV 230


>gi|163814591|ref|ZP_02205980.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
 gi|158450226|gb|EDP27221.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
          Length = 245

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 91/241 (37%), Gaps = 24/241 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    E   S      L      D+  ++  L   G    
Sbjct: 6   ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLP--GMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IR  S  P+I +S    +   +     G DD + KP    E++ARV A+ RR  +
Sbjct: 64  QVCTEIRKTSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAM 123

Query: 122 SNNR--------------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
           + +                      E   + V         +G    +P +E  IL +L 
Sbjct: 124 TESTQKQTQNSTYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLS 183

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   + Q+   ++G ++   +   V+ HI +LR+KL N   +  + +   +GY  +
Sbjct: 184 SRPNQVFTREQLLDKLWG-YEYVGDTRTVDVHIKRLREKLNNNHNWS-IATVWGIGYKFE 241

Query: 222 W 222
           W
Sbjct: 242 W 242


>gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51]
 gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score =  261 bits (668), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 104/226 (46%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +E  ++      L+   ++    +   L+  G    
Sbjct: 3   ILVVDDDERIREIVRLYLEAEGYDIEEADN--GNSALEKVRKDSFDLVILDLMMPGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +++R  +++P+I ++        +  FD G DD V KP   RE+ ARV A+ RRL+ 
Sbjct: 61  TVCKVLRKETKIPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVLRRLEG 120

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +          +    R+  V   V  L  +E  +L  L  N  +   + Q+ + ++
Sbjct: 121 EPTKEHLITYPGFTINQITREVVVDETVVKLTAKEFDLLLVLAKNPSRIFTRDQLLNTVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             +D   +   V++HI++LR KL +++G  D + + R +GY  +W+
Sbjct: 181 -EYDYCGDSRTVDTHINRLRSKLESQVGLSDFIQTVRGVGYKFEWS 225


>gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
 gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium botulinum H04402 065]
          Length = 228

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   + +       + G      +N  E +E      + D+  ++  L       +
Sbjct: 9   LVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFL-EYKPDLVLLDIMLPH--IDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P+I ++        +   + G DD + KP   +E+LARV A+ RR  V
Sbjct: 66  DVLKWIRKDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNV 125

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N   E      + +  +      + +   +P +E  +L YL  N+ +   + Q+   ++
Sbjct: 126 DNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL     ++ +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLEGGPNWE-IETVWGVGYKFEV 227


>gi|291548597|emb|CBL24859.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 233

 Score =  260 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     E       S + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTKLVYDGEDALAAFDSYQPNLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR+ +  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR +V
Sbjct: 65  QVCREIRSKAATPIIMLSAKSEVFDKVLGLELGADDYIMKPFDPKEMVARVRAVLRRYQV 124

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                        AE   + +          G    +P +E  +L  L A+  +   + Q
Sbjct: 125 GQQNDTSVEKTKCAEFDGLTINLTNYSVVCDGHPVDMPPKELELLYCLAASPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   I+G ++   +   V+ HI +LR+K+++   ++ + +   +GY  +
Sbjct: 185 LLDRIWG-YEYIGDTRTVDVHIKRLREKIKDHPHWN-ISTVWGIGYKFE 231


>gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 228

 Score =  260 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++  +  +  +    +   ++  ++  L   G   +
Sbjct: 8   ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLP--GIDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR  S VP+I ++        +   + G DD V KP   +E+LARV A+ RR   
Sbjct: 66  EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N       + + ++       GE    P +E  +L YL +N+ K   + Q+   ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           G +D       V+ HI +LR+KL    G D  +++   +GY  + 
Sbjct: 186 G-YDYPGYSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFEV 227


>gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 226

 Score =  260 bits (666), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    +  ++G  +   ++      L+   R     +   L+  G    E
Sbjct: 5   LVVEDEDSISDPLSYMLRNEGFEVAVADTGPA--ALEEFDRHGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   S
Sbjct: 63  VCRQIRAKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRQAAS 122

Query: 123 NNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +       E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 DEPDGGALEAGPVRMDVDRHKVTVDGRPVELPLKEFELLEMLLRNSGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           G  D   +   ++ H+ +LR K+    G  PV   + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGT-PVHLVTVRGLGYKFE 225


>gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 228

 Score =  260 bits (666), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G + +  N  +  + +    + D+  ++  L    E  ++
Sbjct: 9   LIVDDDENICEVIKLYLESSGYATKISNDGKSAQNVFVEYKPDIVLLDIMLPQ--EDGID 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR     P+I ++        +   + G DD + KP   +E++ARV A+ RR    
Sbjct: 67  VLKWIRKADNTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRRANSE 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            VS+       +++           +   +P +E  +L YL  N+ K   + Q+   ++G
Sbjct: 127 NVSSQVLNFNGLKIDMGSYTVIYNEKDIKMPPKEFELLYYLANNKNKVFTREQLLCEVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V+ H+ +LR+KL    G+D + +   +GY  + 
Sbjct: 187 -YDYPGDSRTVDVHVKRLREKLHEGNGWD-IQTVWGVGYKFEV 227


>gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 228

 Score =  260 bits (666), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   + +       + G      +N  E +E      + D+  ++  L       +
Sbjct: 9   LVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFL-EYKPDLVLLDIMLPH--IDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P+I ++        +   + G DD + KP   +E+LARV A+ RR  V
Sbjct: 66  DVLKWIRKDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNV 125

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N   E      + +  +      + +   +P +E  +L YL  N+ +   + Q+   ++
Sbjct: 126 DNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL     ++ +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLEGGSNWE-IETVWGVGYKFEV 227


>gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 228

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++  +  +  +    +   ++  ++  L   G   +
Sbjct: 8   ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMILP--GIDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR  S VP+I ++        +   + G DD V KP   +E+LARV A+ RR   
Sbjct: 66  EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N       + + ++       GE    P +E  +L YL +N+ K   + Q+   ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL    G D  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFEV 227


>gi|225016728|ref|ZP_03705920.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
 gi|224950532|gb|EEG31741.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
          Length = 230

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   +  E      ++ + D   ++  L   G    
Sbjct: 6   ILVVDDDKNICELLRLYLEKEGYGVILSHDGEEALVKFNALKPDFVLLDVMLP--GLDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I ++        +   + G DD V KP   +EI+AR+ AI+RRL  
Sbjct: 64  QVCREIRKKSNVPVIMLTAKGETFDKVLGLELGADDYVVKPFDTKEIIARIKAIHRRLGQ 123

Query: 122 SNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           SN +AE        + V     + +V G+V   P +E  +L +L +   +   + Q+   
Sbjct: 124 SNQQAEVKEVVYDKLVVNMTRYELKVDGKVVDTPPKELELLFHLASTPNRVYTRDQLLDE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G F+   +   ++ H+ +LR+KL        + +   +GY  + N
Sbjct: 184 VWG-FEYYGDSRTIDVHVKRLREKLEGVSDKWALKTVWGVGYKFEVN 229


>gi|313904351|ref|ZP_07837729.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470901|gb|EFR66225.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 236

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E      SS   D+  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFECTIVNDGEEALRAVSSFSPDLILLDLMLP--GMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  EVCREVRHKSNVPIIMLSAKGEVFDKVLGLEMGADDYMIKPFDSKELVARVKAVLRRFQQ 124

Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      S    E   + V         +G    +P +E  +L +L ++  +   +
Sbjct: 125 IPAVVTEPSTPSEKMVEFPDLTVNLTNYSVIYKGNTLEMPPKELELLYFLASSPNQVFTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            Q+   I+G ++   +   V+ HI +LR+K+     +    +   +GY  + 
Sbjct: 185 EQLLDNIWG-YEYVGDTRTVDVHIKRLREKIPGNTHWSL-STVWGIGYKFEV 234


>gi|296133628|ref|YP_003640875.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032206|gb|ADG82974.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 236

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G ++      +         + D+  ++  L   G   L
Sbjct: 6   ILVVDDEQYIVELIRFNLEKEGYTVITAGDGKIALEQTFREKPDLIVLDIMLP--GVDGL 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++   +   +P+I ++        +   + G DD + KP   RE++AR+ A  RR
Sbjct: 64  EVCRTLQRDKETQLIPIIMLTAKGEEIDKVLGLELGADDYMTKPFSPRELVARIKARLRR 123

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +   N    G +++  +     + G+      +E  +L+ L +N GK   +
Sbjct: 124 NFKAQQSDNQEKENILAIGGLKIDIEKFSVYLNGQKVDFTPKEFELLKLLASNPGKVFTR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   I+G +D A +   V+ HI  +RKK+  + G   V++ R +GY  
Sbjct: 184 EYLLEKIWG-YDFAGDTRTVDVHIRHIRKKIEPEQGEKFVETVRGVGYKF 232


>gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 227

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 102/227 (44%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D A V+D        +G  +      E      ++   D+  ++  L  K    
Sbjct: 5   VILMVEDEAAVRDVARLYLEKEGFRVVPALDGEQALEQLTAVNPDLVILDIMLPKK--DG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R IR  + VP+I +S        +   + G DD V KP   RE++ARV A+ RR  
Sbjct: 63  WSVCREIRRQTAVPIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRRSN 122

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +        + + ++ R  EV+G+   L  +E  +L +L +   +  ++ Q+ +
Sbjct: 123 APAGTGAGPALRYPGLTIDTEARRVEVEGQPIALTPKEFELLAFLASRPRRVFSREQLLA 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++  ++   +   V++HI +LR+KLR   G + + +   LGY  + 
Sbjct: 183 GVWD-YEYPGDTRTVDTHIKRLREKLRG-TGRNYLKTVWGLGYKFEV 227


>gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
 gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 96/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       + + ++  ++  L   G    
Sbjct: 6   ILIVDDDENIAELVSLYLTKECFDTMMVHDGERALVAFDTYKPNLILLDLMLP--GIDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR +V
Sbjct: 64  QVCREIRTRSNTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAVLRRYQV 123

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +             E   I +        V G    +P +E  +L +L ++  +   + 
Sbjct: 124 GSKPETPQADKGKCVEYPGIEINLTNYSVIVDGHTVEMPPKELELLYFLASSPNQVFTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+++  G+    +   +GY  + 
Sbjct: 184 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHNGWSL-STVWGIGYKFEV 232


>gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
 gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   + +       + G      ++  E +E      + D+  ++  L       +
Sbjct: 9   LVVDDDENIAEVIKMYLENSGYDTRVCYDGKEAQEGFL-EYKPDLVLLDIMLPH--IDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P+I ++        +   + G DD + KP   +E+LARV A+ RR  V
Sbjct: 66  DVLKWIRKDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNV 125

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N   E      + V  +      + +   +P +E  +L YL  N+ +   + Q+   ++
Sbjct: 126 DNENKEALNFEQLTVDVNSYTVVYKNKEIKMPPKEFELLYYLAKNKNRVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL     ++ +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLEGGPNWE-IETVWGVGYKFEV 227


>gi|239628828|ref|ZP_04671859.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518974|gb|EEQ58840.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 235

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 99/231 (42%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +    E     + EE L+       + +   L+  G    
Sbjct: 7   ILIVDDDANIAELISLYLMKECY--ETMIVGDGEEALRVFPEFKPNLVLLDLMLPGMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCRELRSGSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +              E   + V          G    +P +E  +L +L ++  +   + 
Sbjct: 125 APAPAPSSTQQGEYVEYPDLIVNLTNYSVIYNGHSVEMPPKELELLYFLASSPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+++   +  + +   +GY  + 
Sbjct: 185 QLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHTNW-AITTVWGIGYKFEV 233


>gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 228

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++  +  +  +    +   ++  ++  L   G   +
Sbjct: 8   ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLP--GIDRM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR  S VP+I ++        +   + G DD V KP   +E+LARV A+ RR   
Sbjct: 66  EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N       + + ++       GE    P +E  +L YL +N+ K   + Q+   ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL     +   ++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLNGGEEWQL-ETVWGVGYKFEV 227


>gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 233

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 99/230 (43%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  E         + ++  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECYDTKIVNDGEQALIAFEHYKPNMLLLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSDVPIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLRRFQP 124

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   A         E   + V          G+   +P +E  +L +L ++  +   + Q
Sbjct: 125 AKPEAYASVDIKCVEYPGLIVNLSNYSVTYDGQQIDMPPKELELLYFLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G ++   +   V+ H+ +LR+K+++K  +  + +   +GY  + 
Sbjct: 185 LLDNIWG-YEYVGDTRTVDVHVKRLREKIKDKPTW-RIATVWGIGYKFEV 232


>gi|153810970|ref|ZP_01963638.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
 gi|149832858|gb|EDM87941.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
          Length = 233

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E      +S + D+  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFETRIVNDGEQALKDFASFQPDLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I +S        +   + G DD + KP   +E++ARV A+ RR KV
Sbjct: 65  QVCREIRHTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +          G+   +P +E  +L +L A+  +   + Q+ 
Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGKQIDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKDHPQWSL-STVWGIGYKFEV 230


>gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 228

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 96/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G S E     +  +      + D+  ++  L       +
Sbjct: 8   ILIIDDDENICEIIKMYLESSGYSTEICYDGKSAQSAFFEYKPDLVLLDVMLPH--MDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S+ P+I ++        +   + G DD + KP   +E++AR+ A+ RR   
Sbjct: 66  DVLKWIRKDSETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNA 125

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N   +  +   + +  +      +     +P +E  +L YL +N  K   + Q+   ++
Sbjct: 126 ENVDKDVLKFRGLTIDINSYIVIYKENEIKMPPKEFELLYYLASNTNKVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL+    +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLQGDQNWQ-IETVWGVGYKFEV 227


>gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
 gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
          Length = 228

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G   +  N  +  E +    + D+  ++  L       +
Sbjct: 8   ILIVDDDENICEVIKMYVESAGYETKVVNDGKTAETMFLEYKPDLVLLDIMLPN--IDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR   + P+I ++        +   + G DD + KP   +E+LAR+ A+ RR  V
Sbjct: 66  DVLKWIRKEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRRYSV 125

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N   E      + +  +      + +   +P +E  +L YL +N+ +   + Q+   ++
Sbjct: 126 DNENKEVLKFNQLTIDINSYTVVYKDDEIKMPPKEFELLHYLASNKNRVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           G +D   +   V+ H+ +LR+KL+   G +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHVKRLREKLQ--GGPNWQIETVWGVGYKFEV 227


>gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G ++E  +              D+  ++  L   G    
Sbjct: 10  ILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAARERPADLVILDIMLP--GMDGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA S VP+I ++   ++   +   +SG DD + KP    E+LAR+ A+ RR   
Sbjct: 68  EVCRRLRAGSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRRHVA 127

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + + +  R+  + G    L  +E  +LE  M + G+ + +  I+  ++
Sbjct: 128 RTEGPVVLQVNGLEMNTASREVTIAGRAVQLTAKEYELLELFMRHPGQVLTRDVIYDRVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   E N++E ++  LR+KL        + + R  GY +
Sbjct: 188 G-YDFGGESNIIEVYVRYLRQKLEESGEGRMLHTVRGAGYIL 228


>gi|153813960|ref|ZP_01966628.1| hypothetical protein RUMTOR_00167 [Ruminococcus torques ATCC 27756]
 gi|317501488|ref|ZP_07959686.1| winged helix family Two component transcriptional regulator
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088040|ref|ZP_08336961.1| hypothetical protein HMPREF1025_00544 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848356|gb|EDK25274.1| hypothetical protein RUMTOR_00167 [Ruminococcus torques ATCC 27756]
 gi|316897117|gb|EFV19190.1| winged helix family Two component transcriptional regulator
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408996|gb|EGG88455.1| hypothetical protein HMPREF1025_00544 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 224

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I      G+   GF          +    ++  ++  L   GE  
Sbjct: 1   MIYCVEDDDNIRELVIYTLETTGLKARGFADGSAFTEALAFETPELILLDIMLP--GEDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ + ++       +P+I ++   S    +   DSG DD V KP    E+++R+ A+ R
Sbjct: 59  LEILKKLKCSSKTKSIPVIMVTAKGSEYDKVIGLDSGADDYVTKPFGMMELVSRIKAVLR 118

Query: 118 RLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K S  R   E   + +     +  V G   PL  +E  +LE LM N G  + + Q+ +
Sbjct: 119 RSKGSQERENPEIQGVHIDVKKHEVTVDGRTVPLTLKEFELLEKLMRNEGIVLTRDQLLT 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ HI  LR+KL  K   + + + R +GY I
Sbjct: 179 EIWG-YDFDGETRTVDVHIRTLRQKLGEKG--EIIQTVRGVGYRI 220


>gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
 gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
          Length = 239

 Score =  259 bits (662), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 99/232 (42%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +           L  +   D+  ++  L       L
Sbjct: 5   LLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQTFDLIILDLMLPE--MDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR+ 
Sbjct: 63  DVCKQLRQSKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRVG 122

Query: 121 VSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            + N              G + ++ D  +  ++G+   L  +E  +L YL  ++G+ + +
Sbjct: 123 HAQNNHEDNSRSTSTLSFGNVEIYPDNYEVYLKGQPLELTPKEFELLLYLANHKGRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+ +A++  ++   +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 183 DQLLNAVWN-YEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLE 233


>gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G + +  +     + +    + D+  ++  L       +
Sbjct: 8   ILIVDDDENICEVIKMYVENSGYNTQVCHDGREAQEVFLEYKPDLVLLDIMLPHV--DGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR   + P+I ++        +   + G DD + KP   +E+LARV A+ RR  V
Sbjct: 66  DVLKWIRKEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRRYNV 125

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N   E      + +  +      +G+   +P +E  ++ YL  N+ +   + Q+   ++
Sbjct: 126 DNENKEVLSFEDLAIDINSYTVVYKGQEIKMPPKEFELVYYLANNKNRVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           G +D   +   V+ H+ +LR+KL+   G +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHVKRLREKLQ--GGPNWQIETVWGVGYKFEV 227


>gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 228

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       +G  ++     E       + + DV  ++  L       L
Sbjct: 5   ILVVDDEKLIVKGIKFSLEQEGWEVDAAYDGEEALNYVKNNKYDVMLLDVMLP--KYDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +++R  S +P+I ++        +   + G DD V KP +  E+ AR+ AI RR + 
Sbjct: 63  QVCQLVREFSNIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAILRRSQH 122

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E G +R+  + R   ++ +   L  +E  +LE    + GK  ++ Q+   
Sbjct: 123 AEKVPNKKTIEVGELRLEVNSRRVFIKNQEMNLTAKEFDMLELFATHPGKVYSRDQLLDT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I+G  +   +   V+ H+ +LR+K+    G  + + +K  +GY  
Sbjct: 183 IWGR-EYPGDVRTVDVHVRRLREKIEPNPGQPEYIYTKWGVGYYF 226


>gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 235

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G ++   N  E      ++ R +   ++  L       +E
Sbjct: 6   LVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAERPEFIILDLMLP--KLDGVE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR + 
Sbjct: 64  VCKQLRQQKVMTPILMLTAKDDEFDKILGLELGADDYMTKPFSPREVVARVKAILRRTQF 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           SN   E       G +++F D  +    GE   L  +E  +L YL  ++G+ + + Q+ S
Sbjct: 124 SNGETEAIDKIVIGDLKIFPDQYEAYFGGERLELTPKEFELLLYLAKHKGRVLTRDQLLS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           A++  +D A +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 184 AVWN-YDFAGDTRIVDVHISHLREKIEQDTKKPLYIKTIRGLGYKLE 229


>gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 229

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 101/228 (44%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   + +        +G S+    +G ++++  E      + D+  ++  L   G
Sbjct: 6   ILVVDDDRNINELLRLYLEKEGYSVASTYDGVDAIKKFE----DHKPDLVLLDIMLP--G 59

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               ++ R IR  S+ P+I I+        +   + G DD + KP   +E++AR+ A+ R
Sbjct: 60  MDGWQVCREIRKKSEKPVIMITAKGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLR 119

Query: 118 RLKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R   + N          + V     +  V G++   P +E  +L +L +N  +   + Q+
Sbjct: 120 RYSGAENDTVKEVRYDNLVVNLTNYELRVAGQLVDAPPKELELLYHLASNPNRVYTRDQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G F+   +   V+ HI +LR+KL  K     + +   +GY  +
Sbjct: 180 LDEVWG-FEYYGDSRTVDVHIKRLREKLEGKSDQWSLKTVWGVGYKFE 226


>gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 228

 Score =  258 bits (661), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++     E    L    + D+  ++  L        E
Sbjct: 5   LVVDDEKLIVKGIKFSLEQDEMEVDCAYDGEEALGLAKENQYDIILLDVMLP--KLTGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR  S VP+I ++        +   + G DD V KP +  E+ AR+ AI RR    
Sbjct: 63  VCQAIREFSTVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAILRRSVSH 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +    E+  +++  D R   + G+   L  +E  +LE L+ +  K  ++  + + 
Sbjct: 123 AAPAETPKVIESRGLKIDCDSRRVHINGKEVNLTAKEFDLLELLVFHPNKVYSREDLLNT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G +D   +   V+ HI +LR+K+  N    D V +K  +GY  
Sbjct: 183 VWG-YDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYF 226


>gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 230

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 105/227 (46%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G  LE          +    +  +  ++  +   G    
Sbjct: 6   ILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIP--GIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R+IRA S VP++ ++   S    ++  ++G DD ++KP   +E+LAR+ A+ RR ++
Sbjct: 64  ELCRLIRAESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALLRRSQM 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N++A+       G + +F +       G       +E  +  +L+ NR +  ++ Q+  
Sbjct: 124 LNSQADIAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G +D       V+ HIS LR+K+  +      + + R  GY  +
Sbjct: 184 KVWG-YDYPGGTRTVDVHISWLRQKIEVDPSKPRHLITVRGTGYKFE 229


>gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 236

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +         G  +    +    E L+    E V  +   L+  G    E
Sbjct: 11  LVVEDDRNIAELVSLYLEKHGFKV--LKAASGAEALEILKNETVDLVVLDLMLPGIDGWE 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR++SQ+P+I ++    LQ  L  F+ G DD V KP   +E++ARV A+ RR   +
Sbjct: 69  VCRQIRSNSQLPVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRRAGET 128

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R +   + +  +    EV G    L +RE  +L +L ++ G+   +  +   ++G F
Sbjct: 129 KPRRVDLPDLTIDLESYVVEVAGRKVELTKRETELLYFLASHPGRVFTREFLLQRVWG-F 187

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +       V+ H+++LR+KL        + +   +GY +
Sbjct: 188 EFPGNTRTVDVHVNRLREKLDGLPKSWHIKTVWGVGYKL 226


>gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 226

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L   +G  +    + +  E L    R+    I   L+  G    
Sbjct: 4   ILIVEDEESFSDPLSYLLEKEGFEVTV--AADGNEALSVFERDSADLILLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 62  EVCRQVRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 QEEPMSATISAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGYKFE 225


>gi|295107994|emb|CBL21947.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 233

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  E      ++   D+  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFETKIVNDGEQALKEFNTFHPDLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR +S VP+I +S        +   + G DD + KP   +E++ARV A+ RR KV
Sbjct: 65  QVCREIRHNSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +          G    +P +E  +L +L A+  +   + Q+ 
Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKDHPQWSL-STVWGIGYKFEV 230


>gi|166030475|ref|ZP_02233304.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
 gi|166029727|gb|EDR48484.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
          Length = 234

 Score =  258 bits (660), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 95/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       +   ++  ++  L   G    
Sbjct: 7   ILIVDDDEAIAELVSLYLAKECFDTMMVHDGEKALVAFDTYHPNLVLLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA +  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRARANTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQA 124

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          E   I +        V G+   +P +E  +L +L ++  +   + 
Sbjct: 125 VPKPEVPAVDKGKCVEYPGIEINLTNYSVLVDGQNVEMPPKELELLYFLASSPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+++  G+    +   +GY  + 
Sbjct: 185 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHNGWKLA-TVWGIGYKFEV 233


>gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42]
 gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42]
          Length = 227

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 29/238 (12%)

Query: 2   FVLIDDRALV---------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++I+D   V         K+G+ A F  DG  +EG+     E+W       D+  ++  
Sbjct: 3   ILMIEDNISVCTMTEMFFFKEGFEAEFVHDG--VEGYQRFTEEDW-------DLVILDIM 53

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L       + + R IR  S VP+I ++   +    +  F+ G DD V KP     ++AR+
Sbjct: 54  LPS--MDGVTICRKIRETSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARI 111

Query: 113 AAIYRRLKV------SNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            A+ RR +       S++  ET    +    R+  + G+    L  +E  +L YL  N  
Sbjct: 112 KAVIRRYRATGQAVKSDDLIETACFSINKKTREVFLHGKPVENLTPKEFDLLFYLAQNPR 171

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  ++ Q+   ++G +    +E  V+ HI +LRKKL ++     + +   +GY  D +
Sbjct: 172 QVFSREQLLEQVWG-YQFYGDERTVDVHIKRLRKKLSSE-EKPFLYTVWGVGYKFDED 227


>gi|222529445|ref|YP_002573327.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456292|gb|ACM60554.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 223

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +  +   D+  ++  L  K     
Sbjct: 3   ILIIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKK--DGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S +P+I ++        +   + G DD + KP   +E++AR+ A+ RR + 
Sbjct: 61  EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N         + V     + +++ +V  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+        + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222


>gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 228

 Score =  257 bits (659), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G      ++      +    + D+  ++  L   G   +E
Sbjct: 9   LIVDDDENICEVINMYLISAGYETRRCHNGREACAVFGDFKPDLVLLDIMLP--GVDGIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR  S++P+I ++        +   + G DD + KP   +E+LARV A+ RR    
Sbjct: 67  VLKWIRKSSEIPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVMRRYNYD 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +        + + ++  +   +G    +P +E  +L YL +N+ K   + Q+   ++G
Sbjct: 127 EKNTEIINYSDLVIDANSYNVVYKGVEIKMPPKEFELLHYLASNKNKVFTREQLLCEVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V+ HI +LR+K+ +      +++   +GY  + 
Sbjct: 187 -YDYPGDSRTVDVHIKRLREKI-SGGENWLIETVWGVGYKFEV 227


>gi|295838770|ref|ZP_06825703.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
 gi|295827181|gb|EFG65293.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
          Length = 345

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++             + R D+  ++  L   G   LE
Sbjct: 17  LVVDDDPTVAEVVAGYLDRAGYTVDLAGDGPSALARAHAHRPDLVVLDLMLP--GMDGLE 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  + VP++ ++     +  +   + G DD V KP   RE++ RVA++ RR    
Sbjct: 75  VCRRLRERAAVPVVMLTARGDEEDRVLGLEQGADDYVTKPFSPRELVLRVASVLRRTGPD 134

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + V    R     GE   L  RE  +L + + + G+   + ++   ++G 
Sbjct: 135 AVSAPVRLGRLAVDPAARLATRDGEALSLTLREFDLLAFFLRHPGRAFGREELMREVWGW 194

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             E  + + V  HI +LR K+ +       + +   +GY  +
Sbjct: 195 --EFGDLSTVTVHIRRLRGKIEDDPAAPRAIRTVWGVGYRFE 234


>gi|91774844|ref|YP_544600.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91708831|gb|ABE48759.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 228

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G +     S+E  + L   A  D+  ++  L   G   +
Sbjct: 5   ILVVEDEPAIQELLALNLTQAGHNPVRALSVEQAQMLIREALPDLILLDWMLP--GMSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R +++      +P+I ++        +   + G DD V KP   RE+ AR+ A+ RR
Sbjct: 63  EFARKLKSDELTKAIPIIMLTARGEEADKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  E G +R+          G+   L   E R+L YLM+N  +  ++TQ+   
Sbjct: 123 RAPQMTDDPLEIGGLRLDPMTHRVSGNGKTLELGPTEFRLLHYLMSNPERVHSRTQVLDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VE+  V+ HI +LR+ L      + + + R +GY  
Sbjct: 183 VWGDR-VFVEDRTVDVHIRRLRRALSESGHEEFIQTVRGVGYRF 225


>gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
           Mycobacterium Tuberculosis
          Length = 230

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 8   LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLP--GMSGTD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 66  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++S+   E+GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 186 WGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVHLVTVRGLGYKLE 229


>gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 229

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E       +   D+  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGLRFSLEQDGMEVDCAYDGEEALEKAKAGEYDIILLDLMLP--KMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++        +   + G DD V KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIREFSNVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAIIRRAGSK 123

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++       E G +++  +GR   + G+   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 QDKQEKAKTVEVGELKLDCEGRRVFISGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYF 227


>gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 228

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++     +  +    +   ++  ++  L   G   +
Sbjct: 8   ILIVDDDENICEVIKMYLETTGYNVKVDQDGKAAKEEFVNFSPNLVVLDMILP--GIDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR  S VP+I ++        +   + G DD V KP   +E+LARV A+ RR   
Sbjct: 66  EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N       + + ++       GE    P +E  +L YL +N+ K   + Q+   ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL    G D  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFEV 227


>gi|312127494|ref|YP_003992368.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777513|gb|ADQ06999.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 223

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +  +   D+  ++  L  K     
Sbjct: 3   ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGIDGIAMFKNEMPDLVILDIMLPKK--DGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S +P+I ++        +   + G DD + KP   +E++AR+ A+ RR + 
Sbjct: 61  EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N         + V     + +++ +V  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+        + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222


>gi|257440065|ref|ZP_05615820.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
 gi|257197417|gb|EEU95701.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
          Length = 232

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   N  E      +  + D+  ++  +       L
Sbjct: 6   ILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLDKFNQVKPDMVLLDVMMP--KMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR     P++ ++        +   + G DD + KP   +E++AR+ A+ RR   
Sbjct: 64  EVCRRIRKLGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCTT 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +    E   +R+  +  +  V+G+V   P +E  +L  L ++  +   + Q+ 
Sbjct: 124 TTAQTESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230


>gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 232

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G  +   +  +    L    + D+  ++  L   G   L
Sbjct: 6   ILVVDDEPNIVELVRFNLENSGFKVITASDGQQALDLVQKEQPDLVILDIMLP--GIDGL 63

Query: 62  ELPR---IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R     RA   +P+I ++        +   + G DD + KP   RE++ARV A+ RR
Sbjct: 64  EVCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGADDYITKPFSPRELVARVKAVLRR 123

Query: 119 L---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + S+   + GPI +  +  +  V+GE      +E  +L  L +N GK  ++  +  
Sbjct: 124 ADKVERSDKIIKAGPITIDVERHEVFVEGERKDFTPKEFELLRLLASNPGKVFSREYLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            I+G +D   +   V+ HI  LR+K+         +++ R +GY  +
Sbjct: 184 NIWG-YDYLGDTRTVDVHIRHLRQKIERNSDTPQFIETVRGIGYKFN 229


>gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++     E         + D+  ++  L   G    E
Sbjct: 5   LVVDDEKLIVKGIKFSLEQDEMQVDCAYDGEEALEKAKENQYDIILLDVMLP--GLTGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQAIREFSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAILRRSAHH 122

Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          E   +++  + R   + G+   L  +E  +LE L+ +  K  ++  + +
Sbjct: 123 DVKEEESAKVVECRGLKIDCESRRVHIHGKEVNLTAKEFDLLELLVFHPNKVYSREDLLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G +D   +   V+ HI +LR+K+  N    D V +K  +GY  
Sbjct: 183 TVWG-YDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYF 227


>gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 233

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       S + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTMMVHDGEEALTTFDSYQPNLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLRRYQP 124

Query: 122 SNNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +                 I +        V      +P +E  +L +L A+  +   + Q
Sbjct: 125 AKQEIPVADKGKCVVYPGIEINLTNYSVTVDDLPVEMPPKELELLYFLAASPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G +D   +   V+ HI +LR K+++   +    +   +GY  + 
Sbjct: 185 LLDQIWG-YDYMGDTRTVDVHIKRLRAKIKDHPTWSL-GTVWGIGYKFEV 232


>gi|312793633|ref|YP_004026556.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312875870|ref|ZP_07735860.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797351|gb|EFR13690.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180773|gb|ADQ40943.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 223

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +  +   D+  ++  L  K     
Sbjct: 3   ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKK--DGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S +P+I ++        +   + G DD + KP   +E++AR+ A+ RR + 
Sbjct: 61  EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N         + V     + +++ +V  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVIYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+        + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222


>gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  257 bits (658), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 93/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       +   ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDNYSPNLVLLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             I +          G+V  +P +E  +L +L ++  +   + Q
Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHPTWSL-GTVWGIGYKFEV 232


>gi|167630147|ref|YP_001680646.1| transcriptional regulatory protein [Heliobacterium modesticaldum
           Ice1]
 gi|167592887|gb|ABZ84635.1| transcriptional regulatory protein [Heliobacterium modesticaldum
           Ice1]
          Length = 232

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G +++     E           D+  ++  L       L
Sbjct: 4   ILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAALACLQEELPDLIILDLMLPR--LDGL 61

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R+ +    +P++ ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 62  ELCRRVRSRNHSAHLPILMLTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALLRR 121

Query: 119 LKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              S+ R     + G + + +D  +  V G    +  +E  +L +L ++ GK   +  + 
Sbjct: 122 ATRSDVRLGGPMQVGELTIDADRYEIRVGGVKQDMTPKEFELLRWLASHPGKVFTREFLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I+G +D   +   V+ HI  LR+K+    G    +++ R +GY  
Sbjct: 182 EKIWG-YDFFGDSRTVDVHIRHLRQKVEKDPGNPRYIETVRGVGYKF 227


>gi|34496017|ref|NP_900232.1| phosphate regulon transcriptional regulatory protein phoB
           [Chromobacterium violaceum ATCC 12472]
 gi|34101870|gb|AAQ58238.1| phosphate regulon transcriptional regulatory protein phoB
           [Chromobacterium violaceum ATCC 12472]
          Length = 229

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++         G  +    + E    L  +A  D+  ++  L   G   +
Sbjct: 5   ILLVEDEPAIQELIAFNLAQAGHHVLRAGTAEAALTLVRNALPDLVLLDWMLP--GASGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + +RA      +P+I ++     Q  +   ++G DD + KP   RE+LAR+ A+ RR
Sbjct: 63  DVAKRLRADERTRHIPIIMLTARSDEQDKVAGLETGADDYITKPFSPRELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  +   +R+          G V  L   E R+L + M +  +  ++ Q+   
Sbjct: 123 RAPQMTDDAVDVQGLRLDPVTHRVTGNGSVIELGPTEFRLLHFFMTHPERVHSRAQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LR  L        + + R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRSALEGTQHDGLIQTVRGTGYRF 225


>gi|121636407|ref|YP_976630.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|2190436|emb|CAA73956.1| RegX3 [Mycobacterium bovis BCG]
 gi|121492054|emb|CAL70517.1| Two component sensory transduction protein regX3 (probably
           luxR-family) [Mycobacterium bovis BCG str. Pasteur
           1173P2]
          Length = 227

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++S+   E+GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVHLVTVRGLGYKLE 226


>gi|323490388|ref|ZP_08095603.1| two-component response regulator (YclK) [Planococcus donghaensis
           MPA1U2]
 gi|323396058|gb|EGA88889.1| two-component response regulator (YclK) [Planococcus donghaensis
           MPA1U2]
          Length = 226

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   V       F  +G++ E   + LE  E  +     D+  ++  L   G   
Sbjct: 3   ILVVEDNPSVSSMLELFFSKEGINGEFAADGLEGYEKYKEGG-HDLLILDWMLP--GMDG 59

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L R IR   S VP+I ++   S    +  F+ G DD V KP     ++AR+ A+ RR+
Sbjct: 60  IALCRKIREEGSSVPIIMLTAKDSESDQVIGFEMGADDYVTKPFSPLTLMARIKAVTRRV 119

Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFS 175
           +         +T    V  + RD    G+    L  +E  +L + + +  +  ++ Q+  
Sbjct: 120 QKPEPVSDLIQTIHFTVNKETRDISKDGQAVDSLTPKEFDLLVFFLQHPKQVFSREQLLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++G +    +E  V+ HI +LRKK+    G     +   +GY  + +
Sbjct: 180 QVWG-YQFYGDERTVDVHIKRLRKKID--GGDKLFHTVWGVGYKFEEH 224


>gi|167769138|ref|ZP_02441191.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
           17241]
 gi|167668778|gb|EDS12908.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        DG ++   N  E      ++   D+  ++  +        
Sbjct: 6   ILVCDDDRNICELLRLYLEKDGYTVSIANDGEEALAKFTAEAPDLILLDIMMP--KLDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S  P+I I+        +   + G DD V KP   +EI+ARV AI RR   
Sbjct: 64  QVCREIRKKSDCPIIMITAKGETFDKVLGLELGSDDYVVKPFDPKEIVARVKAIMRRASK 123

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S+            + V     + +V G V   P +E  +L +L +N  +   + Q+   
Sbjct: 124 SSAENDVKEVAYDKLVVNMTKYELKVDGRVVDTPPKELELLYHLASNPNRVYTRDQLLDE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G F+   +   V+ HI +LR+KL        + +   +GY  + 
Sbjct: 184 VWG-FEYYGDSRTVDVHIKRLREKLEGVSDQWTLKTVWGVGYKFEV 228


>gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
 gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
          Length = 229

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    +  +   D+  ++  L       L 
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALQMAKNKEYDMVLLDLMLPKV--DGLS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIREFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIMRRTGKP 123

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +   E G + +  + R   + G+   L  +E  +LE L+ N GK  ++  +   
Sbjct: 124 AAAESRSRVVEAGDLVLDCESRRVTIAGKEINLTAKEFDVLELLVFNPGKVYSRENLLDT 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYF 227


>gi|220929522|ref|YP_002506431.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999850|gb|ACL76451.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 238

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 105/228 (46%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   ++         +G  +  F++ E      S    D+  ++  L   G   
Sbjct: 5   LIFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLEYSSGKVPDLFILDIMLP--GIDG 62

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R ++ ++     P+I ++        +   + G DD + KP   RE++ARV A++R
Sbjct: 63  LEVCRNLKQNNNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELIARVKALFR 122

Query: 118 RLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R+  +N         G I++    R+     ++  +P +E  +L+ L+ N+GK +++  +
Sbjct: 123 RVNTTNEPKIEVLSHGEIKIDCTRREVYKGDKLLEMPLKEFELLKMLVLNKGKVLSREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              I+G FD   E   V+ HI  LR+K+ +       +++ R +GY  
Sbjct: 183 LDKIWG-FDYYGETRTVDVHIRYLRQKIEDNDDNPTYIETVRGIGYRF 229


>gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 103/233 (44%), Gaps = 15/233 (6%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +++DD A +           G  +      +    +  S + D   ++  L     
Sbjct: 1   MIKVLVVDDEASIVKLLQFNLEKSGFQVVTAFDGKQALEVVKSEQPDFIILDLMLP--KM 58

Query: 59  KVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             +++ + +R   +  P++ ++        +   + G DD + KP   RE++ARV AI R
Sbjct: 59  DGMDVCKTLRQERNNTPILMLTAKDDELDKILGLELGADDYLTKPFSPREVIARVKAILR 118

Query: 118 RLKVSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           R + +            + G IR++ +  +   +     L  +E  +L YL +++G+ + 
Sbjct: 119 RFQNTPEATTGHQEVLLQFGDIRIYPEKYEVFCKDVKVELTPKEFELLNYLASHQGRVLT 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           + Q+ +A++  +D   +  +V+ H+S LR+KL +       + + R LGY ++
Sbjct: 179 RDQLLNAVWN-YDFIGDSRIVDVHVSHLREKLEDDTKNPKYIKTVRGLGYKLE 230


>gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX]
 gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX]
          Length = 230

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G  +    +      +      D+  ++  L   G    E
Sbjct: 5   LVVEDEESYSDALSYLLRKEGFEVAVAPTGTSALEIFDRTGADLVLLDLMLP--GLSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRTLRQKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRTAD 122

Query: 123 N----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +  E GP+R+  +     V+GE   LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 DTVLPSVLEAGPVRMDVERHVVTVRGENVQLPLKEFELLEVLLRNAGRVLTRPQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ HI +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIETDPSKPQHIITVRGLGYKFE 225


>gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 234

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 103/226 (45%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G ++   N  E      +  +     ++  L       +E
Sbjct: 6   LVVDDEQSIVTLLTYNLEQAGFTVLTANDGEEAIEKVAFEQPAFIILDLMLP--KLDGVE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR ++
Sbjct: 64  VCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQL 123

Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           SN   ET     G +++  D  +   +GE   L  +E  +L YL  ++G+ + + Q+ S+
Sbjct: 124 SNGEMETKEIVIGDLKILPDSYEAYFRGERLELTPKEFELLVYLAKHKGRVLTRDQLLSS 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++  +D A +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 184 VWN-YDFAGDTRIVDVHISHLREKIEQDTKKPIYIKTIRGLGYKLE 228


>gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
 gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
          Length = 235

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      S  + D+  ++  L   G+  L
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKASEEQPDMVLLDIMLP--GKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|317054847|ref|YP_004103314.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447116|gb|ADU20680.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 234

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 102/226 (45%), Gaps = 8/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        DG  +   +  E      ++ + D+  ++  L   G    +
Sbjct: 7   LVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLP--GIDGWQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I I+        +   + G DD + KP   +E++AR+ A+YRR+  S
Sbjct: 65  VCREIRKKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQS 124

Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +E   ++     V     +  V G+V   P +E  +L +L +N  +   + Q+   +
Sbjct: 125 SAESEIKEVKYDKLSVNMTRYELRVNGQVMDTPPKELELLFHLASNPNRVYTRDQLLDEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G F+   +   ++ H+ +LR+KL        + +   +GY  + +
Sbjct: 185 WG-FEYYGDSRTIDVHVKRLREKLEGVSDKWALKTVWGVGYKFEVS 229


>gi|254821074|ref|ZP_05226075.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC
           13950]
          Length = 227

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGED 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++S+   E+GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVHLVTVRGLGYKLE 226


>gi|146297008|ref|YP_001180779.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410584|gb|ABP67588.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 223

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +      D+  ++  L  K     
Sbjct: 3   ILVIDDDVKICEVIKLYLEKEGFEVIIAHNGSDGITMFKHEMPDLVILDIMLPKK--DGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P+I ++        +   + G DD + KP   +E++AR+ A+ RR + 
Sbjct: 61  EVCREIRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N         + +     + +++ ++  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVVYPNLTINLTTYEVKLEDKIIEMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+        + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWRIKTVWGVGYKFE 222


>gi|323702131|ref|ZP_08113798.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532818|gb|EGB22690.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 231

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +           +  +   D+  ++  L   G   L
Sbjct: 4   ILVVDDEQPIRELVKYNLEREGFEVLLAGDGNTGLDMARTEAPDLIILDIMLP--GMDGL 61

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +        +P+I +S        +   + G DD + KP   RE++ARV A  RR
Sbjct: 62  SVCRTLHQEPATRAIPIIMLSARGEEVDKVLGLELGADDYITKPFSPRELIARVKARLRR 121

Query: 119 LKVSNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               N   ETG I      +  D     V G    L  +E  +L YL  + GK  ++  +
Sbjct: 122 QTTDNATQETGRIAVGKLIIDQDRFVVSVNGVKQDLTPKEFELLRYLARHPGKVFSRDFL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              I+G ++   +   V+ HI  +R+KL    G    +++ R +GY  
Sbjct: 182 LEQIWG-YEYTGDSRTVDVHIRHIRQKLEQIPGAPQFIETVRGVGYRF 228


>gi|326204682|ref|ZP_08194538.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985249|gb|EGD46089.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   ++         +G  +  F++ E      S    D+  ++  L   G   
Sbjct: 5   VIFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLAYSSENIPDLFILDIMLP--GIDG 62

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R ++  +     P+I ++        +   + G DD + KP   RE++ARV A++R
Sbjct: 63  LEVCRNLKQTTNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELVARVKALFR 122

Query: 118 RLKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R+  +          G I +  + R+      +  +P +E  +L+ L+ N+GK +++  +
Sbjct: 123 RVNTATEPKIDVLSHGEITIDCNRREVYKGSRLLEMPLKEFELLKMLVLNKGKVLSREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              I+G FD   E   V+ HI  LR+K+ +       +++ R +GY  
Sbjct: 183 LDKIWG-FDYYGETRTVDVHIRYLRQKIEDNDENPTYIETVRGIGYRF 229


>gi|240173513|ref|ZP_04752171.1| two-component sensory transduction protein RegX3 [Mycobacterium
           kansasii ATCC 12478]
          Length = 227

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  +  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S+   E+GP+R+  +     V GEV  LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DAESSDGILESGPVRMDVERHVVSVNGEVITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVHLVTVRGLGYKLE 226


>gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E           DV  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALVFAKQKEYDVILLDVMLPR--MNGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIREFSNMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTRK 123

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + AE       G +++ S+ R   +  +   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 ASEAEASKTIVFGDLKIDSESRRVFISEKEINLTAKEFDVLELLVLNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++G +D   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YDYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYF 227


>gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241]
 gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L]
 gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1]
 gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055]
 gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Western North America USA6153]
 gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger
           B]
 gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Vollum]
 gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Australia 94]
 gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI]
 gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241]
 gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L]
 gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1]
 gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar
           anthracis str. CI]
 gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 235

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLP--GKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|41410081|ref|NP_962917.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118466224|ref|YP_883789.1| DNA-binding response regulator [Mycobacterium avium 104]
 gi|254777097|ref|ZP_05218613.1| DNA-binding response regulator [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|41398914|gb|AAS06533.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167511|gb|ABK68408.1| DNA-binding response regulator [Mycobacterium avium 104]
          Length = 227

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++S+   E+GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVHLVTVRGLGYKLE 226


>gi|15607632|ref|NP_215005.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Rv]
 gi|31791671|ref|NP_854164.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis AF2122/97]
 gi|148660258|ref|YP_001281781.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148821690|ref|YP_001286444.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|215402254|ref|ZP_03414435.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|215410013|ref|ZP_03418821.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215444596|ref|ZP_03431348.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|218752126|ref|ZP_03530922.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis GM 1503]
 gi|219556316|ref|ZP_03535392.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T17]
 gi|253797420|ref|YP_003030421.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363455|ref|ZP_04979501.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549440|ref|ZP_05139887.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185360|ref|ZP_05762834.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199491|ref|ZP_05766982.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|260203644|ref|ZP_05771135.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289441874|ref|ZP_06431618.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289446035|ref|ZP_06435779.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289552742|ref|ZP_06441952.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289568414|ref|ZP_06448641.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289573078|ref|ZP_06453305.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289744198|ref|ZP_06503576.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289756566|ref|ZP_06515944.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|289760610|ref|ZP_06519988.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|294995998|ref|ZP_06801689.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis 210]
 gi|297632977|ref|ZP_06950757.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
 gi|297729952|ref|ZP_06959070.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN R506]
 gi|298523970|ref|ZP_07011379.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306779340|ref|ZP_07417677.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|306802091|ref|ZP_07438759.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|306806302|ref|ZP_07442970.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|306966500|ref|ZP_07479161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|306970694|ref|ZP_07483355.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|313657281|ref|ZP_07814161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN V2475]
 gi|1731207|sp|Q11156|REGX3_MYCTU RecName: Full=Sensory transduction protein regX3
 gi|38605703|sp|O07130|REGX3_MYCBO RecName: Full=Sensory transduction protein regX3
 gi|1449289|emb|CAB00952.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium tuberculosis H37Rv]
 gi|2190480|emb|CAA73958.1| RegX3 [Mycobacterium tuberculosis]
 gi|31617257|emb|CAD93364.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium bovis AF2122/97]
 gi|134148969|gb|EBA41014.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504410|gb|ABQ72219.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148720217|gb|ABR04842.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|253318923|gb|ACT23526.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414793|gb|EFD12033.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289418993|gb|EFD16194.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437374|gb|EFD19867.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289537509|gb|EFD42087.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289542168|gb|EFD45816.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289684726|gb|EFD52214.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289708116|gb|EFD72132.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|289712130|gb|EFD76142.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|298493764|gb|EFI29058.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308327670|gb|EFP16521.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|308347183|gb|EFP36034.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|308351125|gb|EFP39976.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|308355755|gb|EFP44606.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|308359814|gb|EFP48665.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|326902318|gb|EGE49251.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis W-148]
 gi|328457206|gb|AEB02629.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
          Length = 227

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++S+   E+GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVHLVTVRGLGYKLE 226


>gi|15839882|ref|NP_334919.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308231563|ref|ZP_07412927.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308370423|ref|ZP_07421449.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308371683|ref|ZP_07425819.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308372906|ref|ZP_07430350.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308374017|ref|ZP_07667694.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308379790|ref|ZP_07487588.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308395531|ref|ZP_07669341.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|13880018|gb|AAK44733.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308216807|gb|EFO76206.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308332020|gb|EFP20871.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308335807|gb|EFP24658.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308339412|gb|EFP28263.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308343288|gb|EFP32139.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308363617|gb|EFP52468.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308367307|gb|EFP56158.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|323721166|gb|EGB30228.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CDC1551A]
          Length = 230

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 8   LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLP--GMSGTD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 66  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++S+   E+GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 186 WGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVHLVTVRGLGYKLE 229


>gi|289450472|ref|YP_003474684.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289185019|gb|ADC91444.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 239

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 93/235 (39%), Gaps = 18/235 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +     F  DG  ++  N  E           +V  ++  L   G+   E
Sbjct: 5   LVVDDDRNICELVQLYFEKDGFQVKTVNDGEMALEEIDKYNPNVVILDLMLP--GKDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        +   + G DD ++KP   +E++ R   + RR + +
Sbjct: 63  VCREIRKTSNVPILMLTARGDTLDKIVGLELGADDYISKPFDPKELVVRAKTVLRRTEAA 122

Query: 123 -------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                          +     + +          G    +P +E  +L +L ++  +   
Sbjct: 123 CPEAKAIDNDDHPAEQITHKDLVIDKSSYTVTFHGTRIDMPPKELELLYFLASHPNRVFN 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDW 222
           + Q+   ++G +D   E   V+ HI ++R+K+ +        + +   +GY  + 
Sbjct: 183 REQLLGQVWG-YDFYGESRTVDVHIKRVREKIDDIGEHPSWDIKTVWGVGYKFEV 236


>gi|268609558|ref|ZP_06143285.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 235

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 98/226 (43%), Gaps = 8/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        DG S+   +  +       +   D+  ++  L   G+   +
Sbjct: 10  LIVDDDKNICDLLRLYLEKDGYSVLLCHDGDDAVVKFKALSPDMVLLDIMLP--GKDGWQ 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP+I I+        +   + G DD + KP   +E++AR+ A+ RR    
Sbjct: 68  VCREIRKISNVPIIMITAKGETIDKVIGLELGADDYIVKPFDAKEVIARINAVTRRVGTG 127

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +          + V  D  + +V G++   P +E  +L YL +N  +   + Q+   +
Sbjct: 128 ISEPEQKEVHYDKLSVNMDSYELKVNGKIIDTPPKELELLYYLASNPNRVYTRDQLLDEV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G F+   +   ++ HI +LR+KL        + +   +GY  + +
Sbjct: 188 WG-FEYYGDSRTIDVHIKRLREKLEGISDKWSLKTVWGVGYKFEAD 232


>gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 234

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLP--GKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|255658266|ref|ZP_05403675.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
 gi|260849578|gb|EEX69585.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
          Length = 235

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 101/233 (43%), Gaps = 19/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G  +E   + +    LQ +   D+  ++  L       L
Sbjct: 3   ILVVDDEAPIRELLSFNLKKSGYEVE--MAADGRTALQRAPEADLVLLDIMLPEV--DGL 58

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++A    S +P+I ++        +   + G DD V KP   RE+LARV A+ RR
Sbjct: 59  EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118

Query: 119 L----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                      K        G +R+        +  +   L  +E  +L+ L+ N G+  
Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++ ++   I+G ++   +   V+ HI  LR KL++     D +++ R +GY  
Sbjct: 179 SRDELLERIWG-YEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230


>gi|163751022|ref|ZP_02158253.1| phosphate regulon response regulator PhoB [Shewanella benthica
           KT99]
 gi|161329183|gb|EDQ00182.1| phosphate regulon response regulator PhoB [Shewanella benthica
           KT99]
          Length = 229

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    + S    D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLKFVLEQHGFTTTSAEDFDSALNMISEPYPDLILLDWMFP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + +R      ++P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKRLRQDEFTRRIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++    +   + +        V  +V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SSPTSSEEPIDVQGLMLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEPSEHDHLIQTVRGAGYRF 225


>gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 256

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    +   EE L+   +  +  +   L+  G    
Sbjct: 26  ILIVEDEESYREPLVYQLTREGYDVSA--AATGEEGLELFTKGGIDLVLLDLMLPGIDGT 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 84  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 144 TAQASGTVDDDIPLVCGDIVMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 204 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 252


>gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
 gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
          Length = 230

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +      E           D+  ++  L       +
Sbjct: 6   ILIVEDEDSLATLLQYNLEKEGYEVAAAGDGEEALLQVQERLPDLIVLDWMLPKV--SGI 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R       VP+I ++        +   D+G DD V KP    E+ AR+ A+ RR
Sbjct: 64  EVCRRLRQRPESRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           L+   + +R   G I +       +  G    L   E R+L++ M + G+  ++ Q+  A
Sbjct: 124 LRPGLAEDRVRCGDIIIDRVAHRVKRNGAEVHLGPTEFRLLDHFMQHPGRVFSREQLLDA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G  D  VE   V+ HI +LRK L      DP+ + R  GYS+D +
Sbjct: 184 VWG-SDVYVEARTVDVHIGRLRKALNAADAGDPIRTVRSAGYSLDVD 229


>gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
 gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
          Length = 234

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       +    +  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYHPSLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          E   I +        V GE   +P +E  +L +L A+  +   + 
Sbjct: 125 IPKPEIPGEDKGKCVEYPGITINLTNYSVIVDGETVDMPPKELELLYFLAASPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHSDWSL-STVWGIGYKFEV 233


>gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 235

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLP--GKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|303241736|ref|ZP_07328233.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590737|gb|EFL60488.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   + +        +G  +   +N ++  E  ++ A  ++  ++  L   G    
Sbjct: 8   LVIDDDVNICELIRLYMEKEGFEVLTIYNGIKAIEAFKTFA-PNIVVLDIMLP--GADGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S +P+I +S        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRQVSNIPIIMLSAKGETFDKVLGLELGADDYIVKPFESKELVARVKAVLRRYEH 124

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +       +V G    +P +E  +L +L +N  K   + Q+   ++
Sbjct: 125 KEIDVKEVVYPNLVINKSNYTLKVNGTDMEVPPKELELLYFLASNPNKVFTRDQLLEQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   +   V+ HI +LR+K+ ++     V +   +GY  + 
Sbjct: 185 G-FDFYGDSRTVDVHIKRLREKIESEDQNWQVKTVWGVGYKFEV 227


>gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
 gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
          Length = 235

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLP--GKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 GGSAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLP--GKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGSAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 256

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    +   EE L+   +  +  +   L+  G    
Sbjct: 26  ILIVEDEESYREPLVYQLTREGYDVSA--AATGEEGLELFTKGGIDLVLLDLMLPGIDGT 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 84  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 204 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 252


>gi|88858377|ref|ZP_01133019.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas tunicata D2]
 gi|88819994|gb|EAR29807.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas tunicata D2]
          Length = 229

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 102/229 (44%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +++DD A +++  + +   +G     F ++E E++  + A       D+  ++  L   
Sbjct: 5   ILVVDDEAPIREMLVFVLEQNG-----FQAIEAEDYDSAIASLMEPYPDMILLDWMLP-- 57

Query: 57  GEKVLELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   +++ + I+       +P+I ++     +  +   + G DD V KP   +E++AR+ 
Sbjct: 58  GGSGIQIAKKIKQSEYTRHIPIIMLTARGEEEDKVKGLEVGADDYVTKPFSPKELMARIK 117

Query: 114 AIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+  ++     E   +R+          G    +   E R+L + M +  +  ++ 
Sbjct: 118 AVIRRVSPTSLEEAIEVHGLRLDPISHRVTSAGSELDMGPTEFRLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+   ++G  +  VE+  V+ HI +LRK +        V + R  GY  
Sbjct: 178 QLLDHVWGT-NVYVEDRTVDVHIRRLRKAIAPMGHDKLVQTVRGSGYRF 225


>gi|291482776|dbj|BAI83851.1| hypothetical protein BSNT_00666 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 289

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 29/238 (12%)

Query: 2   FVLIDDRALV---------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++I+D   V         K+G+ A F  DG+  EG+     E W       D+  ++  
Sbjct: 65  ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGL--EGYQRFTEENW-------DLIILDIM 115

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L       + + R IR  S VP+I ++   +    +  F+ G DD V KP     ++AR+
Sbjct: 116 LPS--MDGVTICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARI 173

Query: 113 AAIYRRLKVS------NNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            A+ RR K +       +  ET    +    R+  + GE    L  +E  +L YL+ N  
Sbjct: 174 KAVIRRYKATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPR 233

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  ++ Q+   ++G +    +E  V+ HI +LRKKL ++     + +   +GY  D +
Sbjct: 234 QVFSREQLLEQVWG-YQFYGDERTVDVHIKRLRKKLASE-DKPFLYTVWGVGYKFDED 289


>gi|226323502|ref|ZP_03799020.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
 gi|225208186|gb|EEG90540.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
          Length = 233

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 95/230 (41%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       S + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTMIVHDGEEALTAFESYQPNLMLLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR+    P+I +S    +   +   + G DD V KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRSKHNTPIIMLSAKGEVFDKVLGLELGADDYVLKPFDSKELVARVKAVLRRYQP 124

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +             +   I +        V G+   +P +E  +L +L ++  +   + Q
Sbjct: 125 AKPETPAASRGKVVDYPGIEINLTNYAVTVDGKNVDMPPKELELLYFLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 LLDQIWG-YEYVGDTRTVDVHIKRLREKIKDHPSWGL-STVWGIGYKFEV 232


>gi|296168092|ref|ZP_06850158.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896899|gb|EFG76527.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 227

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 106/226 (46%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G         +           D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVTDGQAALAEFDRGGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++S+   E+GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVHLVTVRGLGYKLE 226


>gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
          Length = 234

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLP--GKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGSAEKDENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 235

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLP--GKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation)
           [Geobacillus kaustophilus HTA426]
 gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 235

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 105/228 (46%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +    + + EE L   A E  + I   L+      +
Sbjct: 5   ILVVDDEQPIVTLLSYNLEKAGFHV--VTAHDGEEALVKVASEQPALIILDLMLPKLDGV 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 63  DVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAILRRTE 122

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +      S+ R   G + +F +  +  + G+   L  +E  +L YL  ++G+ + + Q+ 
Sbjct: 123 IVQPAAESSERLVVGELEIFPERYEATIGGKPLELTPKEFELLLYLARHKGRVLTRDQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           SA++  ++ A +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 183 SAVWN-YEFAGDTRIVDVHISHLREKIETDTKKPMYIKTVRGLGYKLE 229


>gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
          Length = 234

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLP--GKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKNSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGAAEKEENTEMVIGPIIINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 234

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLP--GKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
 gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
          Length = 233

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 100/230 (43%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  ++ E       + + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLMKECFDTKIVSNGEDALSAFETYQPNLVLLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCRELRAKSQVPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               A         E   + +          G+   +P +E  +L +L A+  +   + Q
Sbjct: 125 VKPEAPAAEKVKCVEYDGLTINLTNYSVLCDGQNVDMPPKELELLYFLAASPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G ++   +   V+ HI +LR+K+++  G+    +   +GY  + 
Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHPGWGL-STVWGIGYKFEV 232


>gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
 gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
          Length = 229

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 95/225 (42%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   N  +    L      ++  ++  L        
Sbjct: 6   IMVVDDDKNICELLRLYLEKEGYQVVIANDGKEAVELNEKEDPELILLDIMLPQ--LDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  SQVP+I ++    +   +   + G DD + KP   +E++AR+ A+ RR   
Sbjct: 64  QVCREIRKKSQVPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRRTGQ 123

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   A    +   + +     + +V G     P +E  ++ +L +N  +   + Q+   +
Sbjct: 124 NQGEAVKEVKYDKLSINLTNYELKVNGVQVDTPPKEMELIYHLASNPNRVFTRDQLLDEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G FD   +   V+ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 WG-FDYYGDSRTVDVHVKRLREKLEGVSDKWALKTVWGVGYKFEV 227


>gi|153852896|ref|ZP_01994333.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814]
 gi|149754538|gb|EDM64469.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814]
          Length = 224

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  +      G    GF          +    ++  ++  L   GE  
Sbjct: 1   MIFCVEDDGNIRELVVYTLESTGFQARGFEDGSSFLEALALETPELVLLDIMLP--GEDG 58

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R ++A      +P+I ++   +    +   D+G DD V KP    E+++R+ A+ R
Sbjct: 59  MELLRKLKASKKTKDIPVIMVTAKGAEYDKVKGLDAGADDYVTKPFGMMELISRIKAVLR 118

Query: 118 RLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R       S +  E G IR+     +  V GEV  L  +E  +L+ LM N    + + Q+
Sbjct: 119 RSAKGSVSSEDTFEIGEIRLDPKKHEVTVHGEVVNLTLKEYELLKRLMKNSNIVLTRDQL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +D   E   V+ H+  LR+KL +      +++ R +GY +
Sbjct: 179 LEDIWG-YDFDGETRTVDVHVRTLRQKLGDAGEQ--IETVRGVGYRM 222


>gi|312622321|ref|YP_004023934.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202788|gb|ADQ46115.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 223

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +  +   ++  ++  L  K     
Sbjct: 3   ILVIDDDVKICEVIKLYLEKEGFEVVIAHNGMDGIAMFKNEMPNLVILDIMLPKK--DGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S +P+I ++        +   + G DD + KP   +E++AR+ A+ RR + 
Sbjct: 61  EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N         + V     + +++ +V  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+        + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222


>gi|308050509|ref|YP_003914075.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307632699|gb|ADN77001.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 229

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +++    +    G         +      S    D+  ++  L   G   +
Sbjct: 5   ILIVEDESAIREMLTFVLDQHGFRTTSAADYDQGLNAISEPYPDLVLLDWMLP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + +R      Q+P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKALRQDEHTRQIPIIMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      E   +R+        V+ +   +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SAPTRLEEAVEVQGLRLDPVSHRVTVEEQGLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK ++       + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIQETGHDKLIQTVRGAGYRF 225


>gi|291545359|emb|CBL18467.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 233

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  E           D+  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELVALYLTKECFETKIVNDGEEALKQFHIFHPDLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I +S        +   + G DD + KP   +E++ARV A+ RR  V
Sbjct: 65  QVCREIRHTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVRAVLRRFHV 124

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  A           + +          G    +P +E  +L +L A+  +   + Q+ 
Sbjct: 125 KSPSAAPKEKCVSYPDLVINLTNYSVTYMGHQIDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKDNPNWAL-STVWGIGYKFEV 230


>gi|225574100|ref|ZP_03782711.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038700|gb|EEG48946.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
           10507]
          Length = 242

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E         R D+  ++  L   G    
Sbjct: 17  ILIVDDDNNIAELIALYLTKECYDTCIVNDGEQALREFEHFRPDLILLDLMLP--GMDGY 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I +S        +   + G DD + KP   +E++ARV A+ RR  V
Sbjct: 75  QVCREIRHTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRFHV 134

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               A           + +           E   +P +E  +L +L ++  +   + Q+ 
Sbjct: 135 KQPAAAPDEKCVSYPDLTINLTNYSVIYMNERVDMPPKELELLYFLASSPNQVFTREQLL 194

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             I+G ++   +   V+ HI +LR+K+++   +  + +   +GY  + 
Sbjct: 195 DHIWG-YEYIGDTRTVDVHIKRLREKIKDHDKWS-IATVWGIGYKFEV 240


>gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 235

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLP--GKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI + S+      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229


>gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 256

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    +   EE L+   +  +  +   L+  G    
Sbjct: 26  ILIVEDEESYREPLVYQLTREGYDVSA--AATGEEGLELFTKGGIDLVLLDLMLPGIDGT 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 84  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 204 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 252


>gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 230

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  ++  ++         S+  D+  ++  L   G   L
Sbjct: 4   LLIVDDEEKIRNLIKVYLVKEGFEVDELDNGNRVVDSIKSSHFDMVVLDIMLP--GPDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S +P+I ++        +   + G DD + KP   RE++AR+ AI RR+  
Sbjct: 62  SLCKEIRKISNIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAILRRVAA 121

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  D R  EV+G    L  +E  +L ++    G+  ++  + 
Sbjct: 122 QPIIQEDRTAILSFSELTINPDNRTVEVRGSEIALTPKEFDLLYFMAKTPGRAFSRENLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +D   +   V++HI++LR KL  +     + +   +GY  + 
Sbjct: 182 ENVWG-YDFYGDLRTVDTHINRLRDKLNMEGTKQAITTVWGVGYKFEV 228


>gi|283798623|ref|ZP_06347776.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|291073609|gb|EFE10973.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|295090650|emb|CBK76757.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 237

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 96/233 (41%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     E    +    + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECYETKIVGDGEEALKVFPVFKPNLILLDLMLP--GMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCRELRSSSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 SNNR------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                E   + V          G    +P +E  +L +L ++  +   
Sbjct: 125 APQPQEPAGPDQKGQYVEFPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + Q+   I+G ++   +   V+ HI +LR+K+++      + +   +GY  + 
Sbjct: 185 REQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDH-EKWALTTVWGIGYKFEV 235


>gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 247

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 18  ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLP--GKDGL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 76  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 135

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI +  +      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 136 GGSAEKEENTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 196 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 241


>gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 234

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLP--GKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI + S+      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
          Length = 236

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +    E     + EE L+       + +   L+  G    
Sbjct: 7   ILIVDDDANIAELISLYLMKECY--ETMIVGDGEEALKVFPEFKPNLVLLDLMLPGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCRELRASSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 S-----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +               E   + V          G    +P +E  +L +L A+  +   +
Sbjct: 125 APAPAPSSTEQQGEYVEYPDLIVNLTNYSVIYMGHSVEMPPKELELLYFLAASPNQVFTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            Q+   I+G ++   +   V+ HI +LR+K+++   +  + +   +GY  + 
Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHNSW-AITTVWGIGYKFEV 234


>gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens
           TA208]
 gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 227

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 29/238 (12%)

Query: 2   FVLIDDRALV---------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++I+D   V         K+G+ A F  DG  +EG+     E+W       D+  ++  
Sbjct: 3   ILMIEDNISVCTMTEMFFFKEGFEAEFVHDG--VEGYQRFTEEDW-------DLVILDIM 53

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L       + + R IR  S VP+I ++   +    +  F+ G DD V KP     ++AR+
Sbjct: 54  LPS--MDGVTICRKIRETSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARI 111

Query: 113 AAIYRRLKV------SNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            A+ RR +       S++  ET    +    R+  + G+    L  +E  +L YL+ N  
Sbjct: 112 KAVIRRYRATGQAVKSDDLIETACFSINKKTREVFLHGKSVENLTPKEFDLLFYLVQNPR 171

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  ++ Q+   ++G +    +E  V+ HI +LRKKL +      + +   +GY  D +
Sbjct: 172 QVFSREQLLEQVWG-YQFYGDERTVDVHIKRLRKKLSSD-EKPFLYTVWGVGYKFDED 227


>gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 256

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    +   EE L+   +  +  +   L+  G    
Sbjct: 26  ILIVEDEESYREPLVYQLTREGYDVSA--AATGEEGLELFTKGGIDLVLLDLMLPGIDGT 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 84  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGEAVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 204 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 252


>gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 236

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D     F  +G  +      +    +    R D+  ++  L   G   +
Sbjct: 4   LLVVDDEKPIADILKFTFEKEGYQVVCAYDGDEALVVVKDERPDLILLDVMLP--GRDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R    VP+I ++   S    +   + G DD V KP   RE++ARV A  RR + 
Sbjct: 62  DVCRTVRQTYDVPIIMLTAKDSELDKVLGLELGADDYVTKPFSTRELVARVKAHLRRNRS 121

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S +      + +  +    E  GE   L  RE  +L YL  ++G+ + +  +  
Sbjct: 122 KVEEKDSQHVLRVHELEIDLNSYTVEKVGEALELTHREFELLVYLARHQGQVLTREHLLQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +++G FD   +   V+  I +LR+K+ +       + ++R LGY++
Sbjct: 182 SVWG-FDYFGDVRTVDVTIRRLREKIEDDPSQPKYIITRRGLGYTL 226


>gi|318081143|ref|ZP_07988475.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 327

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++             + R D+  ++  L   G   LE
Sbjct: 20  LVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLP--GMDGLE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R    VP+I ++        +   + G DD V KP   RE++ RV ++ RR +  
Sbjct: 78  VCRRMRERHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRPD 137

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +    G + +    R     G    L  RE  +L + + + G+  ++ ++   ++G 
Sbjct: 138 PAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWGW 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             E  + + V  HI +LR K+ +       + +   +GY  +
Sbjct: 198 --EFGDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE 237


>gi|186684336|ref|YP_001867532.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466788|gb|ACC82589.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 250

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 110/232 (47%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSARE---DVSAIEAFLI 54
            ++++D  L+++       ++G  +    +G +++E+ +  ++++ E   D+  ++  L 
Sbjct: 21  ILVVEDEELIQEMLAVALEEEGYGVITAPDGRSAIEYLKSFETNSGEVPFDLIILDLMLP 80

Query: 55  GKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++R   + VP++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  Q--INGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR ++SN       +   + +        V+G+   L  +E R+LE  M+   +  +
Sbjct: 139 ALLRRQRLSNLPQLPVLKFKDVTLNPQECRVLVRGQEVSLSPKEFRLLELFMSYARRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLLDQVWGP-DFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249


>gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation
           [Bacillus pseudofirmus OF4]
          Length = 241

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 99/234 (42%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E    L      D+  ++  L       L
Sbjct: 5   ILVVDDEESIATLLQFNLEQSGFEVTVASDGEEGLALAKDEPFDLLILDLMLP--KIDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R + +  P++ ++        +   + G DD + KP   RE++ARV AI RR  
Sbjct: 63  DICKQLRQNKKMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRSA 122

Query: 121 VSNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             +  +E             G + +F +  +  V  +   L  +E  +  YL  ++G+ +
Sbjct: 123 QLSETSEAANNEENGRVIKIGDVEIFPENYEVLVHKKALELTPKEFELFLYLANHKGRVL 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            + Q+ +A++  ++   +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 183 TRDQLLNAVWN-YEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKLE 235


>gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 233

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E   + + +  L+ + ++D   I   L+      LE
Sbjct: 6   IVVDDEVSIATLLKFNLEQAGFEVE--TAHDGKTGLELAEKKDAVLIVLDLMLPEMDGLE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR   
Sbjct: 64  VCKRLRQQKVNTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRSAP 123

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V  +  + G +++ +   +   QGE   L  +E  +L YL  N+G+ + + Q+ SA
Sbjct: 124 QESAVEEDIIQIGDVKIVASNYEVFKQGERLELTPKEFELLAYLAKNKGRVLTRDQLLSA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           I+  +D   +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 184 IWN-YDFVGDTRIVDVHISHLREKIEPVTKKPTYIKTIRGLGYKME 228


>gi|157376435|ref|YP_001475035.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318809|gb|ABV37907.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 229

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    + S    D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVLEQHGFTTTAAEDFDSALEMLSEPYPDLILLDWMFP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + +R      Q+P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++     +   + +        V  +V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SSPTSLEEPIDVQGLMLDPTSHRVMVDEQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEPSGHDRLIQTVRGAGYRF 225


>gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 234

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLP--GKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI + S+      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228


>gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 227

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++        ++G  +   ++ + ++ L    +  +  +   ++       
Sbjct: 6   IMVVEDEERMRQLLHLYMQNEGFEV--VDAYDGQQALDLFEKYPMDLVILDVMLPNVDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  SQVP+I ++        L  FD GVDD V KP   +E++ARV A+ +R + 
Sbjct: 64  TVCRQIRQGSQVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKRSRG 123

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + N      +   + +    R   +  E   L  +E  +L +L ++ G+  ++ Q+   +
Sbjct: 124 NANAQDRVIKYESLSIEPLSRRVTINDEDIILTPKEFDLLFFLASHPGQVFSREQLLHHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   +   V++H+  LR KL N      + +   +GY  D
Sbjct: 184 WG-YDFYGDSRTVDAHVKNLRSKLGNYG--RYIVTVWGVGYKFD 224


>gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 249

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A     G  +    + +      ++ R D+  ++  L        
Sbjct: 17  LLVVDDEPNIRELLSASLRFSGFRVASAATGQEALDAVAAERPDLVVLDVMLPD--LDGF 74

Query: 62  ELPRIIRAHSQ-------VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
            + R +R  +Q       VP++ ++        +     G DD V KP    E++AR+ A
Sbjct: 75  TVVRRLRDQTQWPQSPEHVPVLFLTAKDGTGDKVQGLAVGADDYVTKPFSLEELIARIRA 134

Query: 115 IYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           I RR      + R     + +     +    G    L   E ++L YLMAN G+ V+K Q
Sbjct: 135 ILRRAGGPADDGRLVVADLTLDPAAHEVTRGGVPVSLSPTEFKLLHYLMANVGRVVSKAQ 194

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           I   ++  +D   + ++VES+IS LR+KL +  G  P  + + R +GY++
Sbjct: 195 ILDHVW-AYDFGGDLSIVESYISYLRRKLDSGPGHGPKLIHTVRGIGYAL 243


>gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51]
 gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 104/224 (46%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++         +G  ++   +    E L+   ++D + +   L+       
Sbjct: 4   ILVIDDEERIRHLVRMYLEREGYEVD--EAGNGREALEKFQKQDYALLIVDLMMPEIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +R  S +P+I ++        +  F+ G DD + KP   +E++ARV A+ RR + 
Sbjct: 62  KVCRDVRERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRG 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +S++    GP+++  D     +  E  P   RE  +L +L  N  +  ++ Q+   +
Sbjct: 122 NTAISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   +   V++H+ K+R+KL +      + +   +GY  D
Sbjct: 182 WG-YDFYGDARTVDTHVKKIREKLADPKVRSMLATVWGVGYKFD 224


>gi|144900225|emb|CAM77089.1| phosphate regulon transcriptional regulatory protein phoB
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 233

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 8/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D A +          +G  +      E    L S  + D+  ++  L       
Sbjct: 6   LILIVEDEAALATMLRYNLEKEGYRVCEAGDGEEALTLVSERKPDLMVLDWMLPS--LSG 63

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +R        P+I ++        +   ++G DD + KP    E++AR+ A+ R
Sbjct: 64  IEVCRQLRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYMTKPFSLPELMARIRAMLR 123

Query: 118 RLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++    +   E G I +               L   E R+L++ M + G   ++ ++ +
Sbjct: 124 RVQPVPQKGMLEYGDIAMDLAAHRVTRGDRPVHLGPTEFRLLQFFMQHPGNVFSREELLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++G  D  VE   V+ HI +LRK L      D + + R  GY++D
Sbjct: 184 AVWGP-DIYVEPRTVDVHIRRLRKALNGDNDADIIRTVRAAGYALD 228


>gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 229

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 8/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G S+      E           D+  ++  L       +E
Sbjct: 6   LVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKV--SGIE 63

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R     + VP+I ++        +   D+G DD V KP    E+ AR+ A+ RR+
Sbjct: 64  VCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRI 123

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   + +  E G I +       +       L   E R+L+YLM + G+  ++ Q+  A+
Sbjct: 124 RPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G  D  VE   V+ H+ +LRK L NK   DP+ + R  GY+ D N
Sbjct: 184 WG-SDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDVN 228


>gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 273

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G  +E  +  +           D+  ++  L   G   +
Sbjct: 43  ILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEPPDLILLDLMLP--GTDGI 100

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   ++P+I ++   S    +   + G DD V KP  +RE+LAR+ A  RR++ 
Sbjct: 101 EICRKVREKYRMPIIMVTAKDSEVDKVLGLELGADDYVTKPFSNRELLARIKANLRRVRD 160

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                     + + G + +           +   L  RE  +L Y+  +  + + +  + 
Sbjct: 161 HGESSTDPGDQVQVGSLTIDQGSYLVTKHQKTLDLTHREFELLLYMAKHVNQVLTREHLL 220

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +++G +D   +   V+  I +LR+K+  +      + ++R +GY++
Sbjct: 221 QSVWG-YDYFGDVRTVDVTIRRLREKIEQDPSQPQYIITRRGIGYTM 266


>gi|253681323|ref|ZP_04862121.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562561|gb|EES92012.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 228

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G S E     +  +      + D+  ++  L       +
Sbjct: 8   ILIVDDDENICEIIKMYLESSGYSTEIRYDGKSAQSAFFEYKPDLVLLDVMLPH--MDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S++P+I ++        +   + G DD + KP   +E++AR+ A+ RR   
Sbjct: 66  DVLKWIRRDSEIPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNT 125

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   + +  +      + +   +P +E  +L YL +N  K   + Q+   ++
Sbjct: 126 ESVDRDILKFKGLTIDINSYIVIYKDKEIKMPPKEFELLYYLASNTNKVFTREQLLCEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL+    +  +++   +GY  + 
Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLQGDQDWQ-IETVWGVGYKFEV 227


>gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
 gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
          Length = 237

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 101/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G ++E     E    +   ++ D+  ++  L       L
Sbjct: 7   ILVVDDEKPISDIISFNLENEGYAIEKAYDGEQALKVFEKSQPDLVILDLMLP--KMDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR  S VP+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 65  EVCREIRKQSAVPVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRNLV 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V+ N    G + +  D       GE   L  RE  +L YL  + G+ + +  +
Sbjct: 125 KEPEPQEVNKNEIVVGDLVIHQDAYIISKHGEEIELTHREFELLHYLARHIGQVMTREHL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++  +D   +   V+  I +LR+K+ +       + ++R +GY +
Sbjct: 185 LETVWD-YDYFGDVRTVDVTIRRLREKIEDIPSHPTYIVTRRGVGYLL 231


>gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E       + + D+  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKANKYDIILLDLMLP--KMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   D G DD + KP +  E+ AR+ AI RR +  
Sbjct: 64  VCQQIREFSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARSE 123

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E+G +++  + R   + G+   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 HEEKEKAKTIESGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYF 227


>gi|302871747|ref|YP_003840383.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574606|gb|ADL42397.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 223

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +  +   D+  ++  L  K     
Sbjct: 3   ILVIDDDIKICEVIKLYLEKEGFEVVVTHNGMDGISVFKNEMPDLVILDIMLPKK--DGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S +P+I ++        +   + G DD + KP   +E++AR+ A+ RR + 
Sbjct: 61  EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N         + V     + +++ +V  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+ N      + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIENNKYPWKIKTVWGVGYKFE 222


>gi|118619653|ref|YP_907985.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183980840|ref|YP_001849131.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
 gi|118571763|gb|ABL06514.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183174166|gb|ACC39276.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
          Length = 227

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  +  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +VS+   E+GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEVSDGVLESGPVRMDVERHVVSVNGDAITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVHLVTVRGLGYKLE 226


>gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G + +   + +  +        D+  ++  +       ++
Sbjct: 9   LIVDDDENISEVIDMYLKSSGYNTKIALNGKEAQEFYLEYNPDIVLLDVMIPY--IDGID 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR   + P+I I+        +   + G DD + KP   +E+LARV A+ RR    
Sbjct: 67  ILKWIRKQKETPVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLRRYSSE 126

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N   +   + + S         E   +P +E  +L YL  N+ K   + Q+   ++G
Sbjct: 127 NIKNEVIKLSDLSIDSTSYKVIYNEEEIKMPPKEFELLYYLANNKNKVFTREQLLCEVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   V+ HI +LR+KL +      + +   +GY  + N
Sbjct: 187 -YDYPGDSRTVDVHIKRLREKL-SSGEQWEIQTVWGVGYKFEVN 228


>gi|325681015|ref|ZP_08160547.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
 gi|324107244|gb|EGC01528.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
          Length = 233

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 101/225 (44%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        DG  +   +  E      ++ + D+  ++  L   G    +
Sbjct: 7   LVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLP--GIDGWQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I I+        +   + G DD + KP   +E++AR+ A+YRR+  S
Sbjct: 65  VCREIRKKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQS 124

Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +E   ++     V     +  V G+V   P +E  +L +L +N  +   + Q+   +
Sbjct: 125 SAESEIKEVKYDKLSVNMTRYELRVDGKVLDTPPKELELLFHLASNPNRVYTRDQLLDEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 185 WG-FEYYGDSRTIDVHVKRLREKLEGVSDKWALKTVWGVGYKFEV 228


>gi|332286633|ref|YP_004418544.1| phosphate regulon two-component response regulator [Pusillimonas
           sp. T7-7]
 gi|330430586|gb|AEC21920.1| phosphate regulon two-component response regulator [Pusillimonas
           sp. T7-7]
          Length = 233

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      E  + L  +   D+  ++  L   G   +
Sbjct: 5   ILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLP--GASGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +R+      VP+I ++   +    ++  ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  TLARTLRSDERTRHVPVIMLTAKGAEHDKVEGLEAGADDYITKPFSPKELIARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  + G +++          G+   +   E R+L + M +  +  ++ Q+   
Sbjct: 123 RAPQLTDDIIQIGGLKLDPATHRVTGGGQTLTVGPTEFRLLHFFMTHTERVFSRAQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LRK L      + +++ R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPGKLENHIETVRGAGYRF 225


>gi|296332737|ref|ZP_06875197.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673082|ref|YP_003864754.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150017|gb|EFG90906.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411326|gb|ADM36445.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 227

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 106/238 (44%), Gaps = 29/238 (12%)

Query: 2   FVLIDDRALV---------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++I+D   V         K+G+ A F  DG+  EG+     E W       D+  ++  
Sbjct: 3   ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGL--EGYQRFTEENW-------DLIILDIM 53

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L       + + R IR  S VP+I ++   +    +  F+ G DD V KP     ++AR+
Sbjct: 54  LPS--MDGVTICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARI 111

Query: 113 AAIYRRLKVS------NNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            A+ RR + +       +  E+    +    R+  + GE    L  +E  +L YL+ N  
Sbjct: 112 KAVIRRYQATGKAVIDEDMIESECFTINKKTREVFLNGEPVENLTPKEFDLLYYLVQNPR 171

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  ++ Q+   ++G +    +E  V+ HI +LRKKL ++     + +   +GY  D +
Sbjct: 172 QVFSREQLLEQVWG-YQFYGDERTVDVHIKRLRKKLASE-DKPFLYTVWGVGYKFDED 227


>gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
 gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
          Length = 235

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +      D+  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILEFNLKKEGYEVHCAYDGNEALQMVEDLNPDMILLDIMLPNK--DGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQNT 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S+N  + G + +F D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 123 AAPAEEESSSNEIQIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 229


>gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 104/224 (46%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++         +G  ++   +    E L+   ++D + +   L+       
Sbjct: 4   ILVIDDEERIRHLVRMYLEREGYEVD--EAGNGREALEKFQKQDYALLIVDLMMPEIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +R  S +P+I ++        +  F+ G DD + KP   +E++ARV A+ RR + 
Sbjct: 62  KVCRDVRERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRG 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +S++    GP+++  D     +  E  P   RE  +L +L  N  +  ++ Q+   +
Sbjct: 122 NTAISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   +   V++H+ K+R+KL +      + +   +GY  D
Sbjct: 182 WG-YDFYGDARTVDTHVKKIREKLADPKVRSMLATVWGVGYKFD 224


>gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 108/229 (47%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G S+E  +  +      +    D+  ++  L       LE
Sbjct: 7   LVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHPPDLIVLDLMLP--KMDGLE 64

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR  +S +P++ ++        +   + G DD + KP   RE++ARV AI RR++ 
Sbjct: 65  VCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAILRRMEA 124

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             ++           G + + ++G +   +G+   L  +E  +L +L ++RGK +++ Q+
Sbjct: 125 LRDQGIPGDRNCLRVGELEIDTEGYEVRKKGDPVDLTPKEFELLIHLASHRGKVLSRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            +A++  +D   +  +V+ H+S LR+K+         + + R +GY  +
Sbjct: 185 LNAVWD-YDYIGDTRIVDVHVSHLREKVEEDSRNPIYIKTVRGIGYKFE 232


>gi|325262633|ref|ZP_08129370.1| DNA-binding response regulator VicR [Clostridium sp. D5]
 gi|324032465|gb|EGB93743.1| DNA-binding response regulator VicR [Clostridium sp. D5]
          Length = 249

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG+ ++     E       +   D+  ++  L        
Sbjct: 26  ILVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEYARNCEYDLVLLDVMLP--KLDGF 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   
Sbjct: 84  QVCQQIREFSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 143

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +     G +R+  + R   +      L  +E  +LE L  N  K  ++  + + 
Sbjct: 144 REEPAGSTVIVKGAMRIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 203

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G +D   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 204 IWG-YDYPGDARTVDVHIRRLREKIEKNPSEPKYVHTKWGVGYYF 247


>gi|91794040|ref|YP_563691.1| phosphate regulon transcriptional regulatory protein phoB
           [Shewanella denitrificans OS217]
 gi|91716042|gb|ABE55968.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 229

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +++  I +    G +       +    L      D+  ++      G   +
Sbjct: 5   ILIVEDESAIREMLIFVMEQHGFTTVAAEDFDSAIGLLQEPYPDLILLDWMFP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + ++      Q+P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKRLKQDKFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      +   +++        V   V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SAPTRLEETIDVQGLQLDPVSHRVCVGDSVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK + N      + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVENTGHDRLIQTVRGAGYRF 225


>gi|302390749|ref|YP_003826570.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201377|gb|ADL08947.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E    +  S   ++  ++  L  +     
Sbjct: 5   ILVVDDEKPIVDILKYNLAKEGYEVIAAYDGEEAIEVAFSQNPNLILLDVMLPKQ--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R     P+I ++        +   + G DD V KP   RE++AR+ A  RRL +
Sbjct: 63  QVCKKLREKLACPIIMLTAKGEEVDKVLGLELGADDYVTKPFGMRELMARIKANLRRLTL 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           SN   E        + +         +G    L  RE  +L++L A  G+  ++ ++   
Sbjct: 123 SNPVEEQKLLKVKDLEIDLASFQVRKKGNTLELTFREFELLKFLAAQPGQVFSREKLLEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           ++G ++   +   V+  I +LR+K+ +       + +KR +GY  + N
Sbjct: 183 VWG-YEYYGDIRTVDVTIRRLREKIEDDPSNPSYIKTKRGVGYYFNRN 229


>gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 226

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D        +G  +   ++    + L+   R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYNLRKEGFEVAVAST--GPDALEIFDRNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +
Sbjct: 63  VCRELRARSNVPVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVLRRRGDA 122

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEPPPSVLEAGPVRMDVERHVVTVDGEAVQLPLKEFELLEVLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           G  D   +   ++ HI +LR K+         + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEPVPSSPRYIVTVRGLGYKFE 225


>gi|294139921|ref|YP_003555899.1| phosphate regulon response regulator PhoB [Shewanella violacea
           DSS12]
 gi|293326390|dbj|BAJ01121.1| phosphate regulon response regulator PhoB [Shewanella violacea
           DSS12]
          Length = 229

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +++    +    G +       +    + S    D+  ++      G   +
Sbjct: 5   ILIVEDESAIREMLAFVLDQHGFNTTSAEDFDSAINMISEPYPDLILLDWMFP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + +R      Q+P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++     +   + +        V  +V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SSPTSLEEPIDVQGLMLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEPSEHDRLIQTVRGAGYRF 225


>gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 228

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    S   EE L+   +  +  +   L+  G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAAAS--GEEGLELFTKGGIDLVLLDLMLPGIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q+   I+
Sbjct: 122 AVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQLIDRIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 182 G-SDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGYKID 224


>gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 235

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G   +   + + EE L+S A      I   L+   +  L
Sbjct: 4   ILVVDDEKPISDIITFNLQKEGY--DTLAAFDGEEALESFASYQPDLIVLDLMLPKKDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        +   + G DD V KP  +RE+ AR+ A  RR +V
Sbjct: 62  EVCREIRKTSSVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANLRRSQV 121

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         +N    G + +  D       G+   L  RE  +L YL  + G+ + +  
Sbjct: 122 NVEAAEEKEDSNELNVGNLTIHEDAYYVSKNGKEVDLTHREFELLHYLSKHLGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +  N
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDTPSHPKLLMTRRGVGYYLQDN 232


>gi|325264640|ref|ZP_08131370.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030302|gb|EGB91587.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 233

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +   + E       +    +  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLVKECFDTKIVYNGEDALSAYETYHPGLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSSTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E   + +          G    +P +E  +L +L A+  +   + Q
Sbjct: 125 VKPEEPAEDKTKCVEYDGLTINLTNYSVVCDGHPVEMPPKELELLYFLAASPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHPSWGL-STVWGIGYKFEV 232


>gi|170727789|ref|YP_001761815.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813136|gb|ACA87720.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 229

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G         +    L +    D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVLEQHGFVTSAAEDFDSALDLLTEPYPDLVLLDWMFP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + +R      Q+P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKRMRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVIRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++     +   + +        V  +V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SSPTSLEEPIDVQGLMLDPISHRVTVGEQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEPSNHDRLIQTVRGAGYRF 225


>gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 233

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 105/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       ++G  ++  ++ E           D+  ++  L  K    L
Sbjct: 3   ILLVEDEEAITEFVKKGLSEEGYIVDTVDNGEDALNKIFDVDYDLIILDIMLPVK--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +R +    P++ ++   S +  +   ++G DD + KP    E+LAR+ AI RR  
Sbjct: 61  KVCREVRENGISTPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRRPP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N + + G + + +     E  G+   L  RE  +LE+LM +  + +++T+I   ++ 
Sbjct: 121 TILNLKLQVGDLVLDTVTHHVERSGKRIDLTPREYALLEFLMRHPNQVLSRTRIVEHVWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D   E N+V+ +I  LRKK+ N      + +   +GY I
Sbjct: 181 L-DFYTESNIVDVYIRYLRKKIDNGFENKLIHTVHGVGYMI 220


>gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 236

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +                + D+  ++  L  K    +
Sbjct: 7   ILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVEDIQPDLILLDIMLPQK--DGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 65  EVCREIRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 124

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +        + GP+ +  D      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 125 RQEQDVKEMSEIKIGPLTIHPDAYTVSKRGEHIELTHREFELLHYLAKHIGQVMTREHLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 185 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 230


>gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
 gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
          Length = 225

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A   +    +   +G  +      +  + L+   R     +   L+  G    E
Sbjct: 5   LVVEDEASYSEALSYMLRKEGFEVAVAE--DGTDALKEFDRNGADIVLLDLMLPGLSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IRA S VP+I ++        +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQIRATSSVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGTEP 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E GP+R+  +     V G    LP +E  +LE  + N G+ + + Q+   ++G
Sbjct: 123 DAAPATLEAGPVRMDVERHVVTVDGNEQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             D   +   ++ H+ +LR KL  +      + + R LGY +D
Sbjct: 183 -SDYVGDTKTLDVHVKRLRAKLEPDPSEPKFLVTVRGLGYKLD 224


>gi|312135255|ref|YP_004002593.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775306|gb|ADQ04793.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 223

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +   ++      +  +   D+  ++  L  K     
Sbjct: 3   ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGISVFKNEMPDLVILDIMLPKK--DGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S +P+I ++        +   + G DD + KP   +E++AR+ A+ RR + 
Sbjct: 61  DVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N         + V     + +++ +V  +P +E  +L +L ++  K   + Q+   I+
Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++   +   V+ HI ++R+K+        + +   +GY  +
Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222


>gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 232

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G S+   +  E      ++ + D+  ++  L   G    +
Sbjct: 7   LIVDDDKNICDLLRLYLEKEGYSVILSHDGEEAVVKFNALKPDIVLLDVMLP--GLDGWQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P++ I+        +   + G DD + KP   +E++AR+ A+ RR   S
Sbjct: 65  VCREIRKKSNIPILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRRTGQS 124

Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               E   +R     V     + +V G+V   P +E  +L YL +N  +   + Q+   +
Sbjct: 125 PAEMEVREVRYDKLSVNMTRYELKVDGKVVDAPPKELELLFYLASNPNRVYTRDQLLDEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G F+   +   ++ HI +LR+KL        + +   +GY  +
Sbjct: 185 WG-FEYYGDSRTIDVHIKRLREKLEGVSDKWELKTVWGVGYKFE 227


>gi|134298575|ref|YP_001112071.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051275|gb|ABO49246.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 232

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G  +    + +    +  S   D+  ++  L   G+  L
Sbjct: 4   ILVVEDEQPIRELIKYNLEREGFQVIQAANGDIALDMAKSEVPDIILLDIMLP--GQDGL 61

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +    A   +P+I +S        +   + G DD + KP   RE++AR+ A  RR
Sbjct: 62  SVCRYLHQDAATRSIPIIMLSARGEELDKVLGLEMGADDYITKPFSPRELIARIKARLRR 121

Query: 119 LKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             V N   E       G + +  D       G    L  +E  +L YL  N GK   +  
Sbjct: 122 QTVENQVLEDAGRITVGKLVIDQDRFVVSYNGIKQDLTPKEFELLRYLARNPGKVFTRDF 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   I+G +D + +   V+ HI  +R+KL         +++ R +GY  
Sbjct: 182 LLEQIWG-YDFSGDSRTVDVHIRHIRQKLEQLPDAPQFIETVRGVGYRF 229


>gi|320162057|ref|YP_004175282.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995911|dbj|BAJ64682.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 235

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +     A    +G   +          +  S + D+  ++  L   G   +
Sbjct: 14  ILLIDDEISIHTVVTAYLKAEGYEYQSAMDGPSGLAMARSFKPDIIILDVMLP--GMDGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R  S V +I ++        +     G DD + KP   RE++AR+ A  RRL  
Sbjct: 72  ELLAHLRRESNVYVIMLTARSEETDKIVGLSVGADDYLTKPFSPRELMARIKAALRRLNP 131

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          +R+    R   V   +  L   E  +L  L  + G+ +++ Q+  
Sbjct: 132 PPAATSETAMLNFAHVRIDPSARRVWVNNTLIDLTTVEFDLLLTLAQHHGRVLSREQLLE 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++G +D   +  VV+ HI  +R+KL N      +++ R +GY  + N
Sbjct: 192 KVWG-YDYYGDTRVVDVHIGHIRQKLGNNT---WIETVRGVGYRFEDN 235


>gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 225

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G  ++     E    L ++ + D+  ++  +   G    
Sbjct: 5   ILVIDDDRKITAMLRRCLVFEGFEVQTAAGGEEGLRLAAAWKPDLVVLDVLMP--GTDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA S +P++ ++    +   +   D G DD + KP    E+LAR+ A+ RR + 
Sbjct: 63  EVCRRLRAGSSLPILMLTAKDEVADRVKGLDLGADDYLVKPFALEELLARIRALLRRSRQ 122

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++          + +    R+    G    L  RE  +L   M +  + + + QI   ++
Sbjct: 123 ADTAMRPLVYADLTLDHATREVRRGGRPIQLTAREFELLALFMEHPRQVLTRDQIMDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+ D   E NV+E ++  LR+KL        + + R +GY +
Sbjct: 183 GI-DYGGESNVLEVYVGMLRQKLEEGGEKRIIHTVRGVGYVL 223


>gi|108797641|ref|YP_637838.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866728|ref|YP_936680.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433265|ref|YP_001068956.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108768060|gb|ABG06782.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692817|gb|ABL89890.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126233065|gb|ABN96465.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 228

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTVVADGPSALAEFDRAGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGTDV 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V +   E GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   
Sbjct: 123 DDPGVPDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVHLVTVRGLGYKLE 227


>gi|119961724|ref|YP_947342.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119948583|gb|ABM07494.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 274

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 16/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +L++D   + D         G  ++    GF +LE    L +S + D+  ++  L   G
Sbjct: 34  ILLVEDEQTIADVVRDYLLKAGFQVDMAGDGFTALE----LAASRQPDLVILDRMLP--G 87

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +E+ R +R    VP+I ++   +    +   + G DD V KP   RE++ RV ++ R
Sbjct: 88  LDGVEVCRRLRQTMSVPVIMVTALGTEDDRILGLEMGADDYVTKPFSPRELVLRVKSVLR 147

Query: 118 RL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R           E   + +    R     G    L  RE  +L ++M    +  ++ ++ 
Sbjct: 148 RSIKEFAPEPPVEAAGLELDPASRTVTHGGVPLALTVREFDLLAFMMRRPNQVFSREELI 207

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            A++G   +  + + V  H+ +LR+K+  N    + + +   +GY  D
Sbjct: 208 KAVWGW--DFGDLSTVTVHVRRLREKIEANPTKPELLKTVWGVGYRFD 253


>gi|261368149|ref|ZP_05981032.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282569913|gb|EFB75448.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 228

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G ++   +              D+  ++  +        
Sbjct: 6   ILVVDDDKNICELLRLYLVKEGYNVTMVHDGNAALTEFDKLHPDLVLLDVMMPV--MDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P+I ++        +   + G DD + KP   +E+ AR+ A+ RR   
Sbjct: 64  EVCRKIRAKDNTPIIMLTAKGETYDKVLGLELGADDYIVKPFDAKEVTARIKAVLRRSTK 123

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +     +   + +  +  + +V+G+V   P +E  +L  L  +  +   + Q+   ++
Sbjct: 124 EEDNKGVYDFDNLHLDMNRYELKVKGKVVEAPPKELELLACLAGHPNRVYTRDQLLDEVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G F+   +   ++ H+ +LR+KL        + +   +GY  + 
Sbjct: 184 G-FEYYGDSRTIDVHVKRLREKLEGASDKWNLKTVWGVGYKFEV 226


>gi|197301860|ref|ZP_03166929.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
           29176]
 gi|197299090|gb|EDY33621.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
           29176]
          Length = 229

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       +G+ ++     E           D+  ++  L        
Sbjct: 5   ILVVDDEKLIVKGICFSLEQEGMEVDCAYDGEEALEYAKKCEYDLVLLDVMLP--KLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   
Sbjct: 63  QVCQQIREFSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G +++  +GR   +  +   L  +E  +LE L  N  K  ++  + +
Sbjct: 123 RKEEPAQSPMLVKGNMKIDCEGRRVFIGEKEINLTAKEFDVLELLAMNPNKVYSRENLLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G +D   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 183 LIWG-YDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYF 227


>gi|315442360|ref|YP_004075239.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315260663|gb|ADT97404.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 228

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADT 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + V++   E GP+R+  +     V G    LP +E  +LEYLM N G+ + + Q+   
Sbjct: 123 DDVGVADGVLEAGPVRMDVERHVVSVNGSPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+ +    +PV   + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIESDPA-NPVHLVTVRGLGYKLE 227


>gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 234

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 104/228 (45%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +    + + EE L+  A E  + I   L+      +
Sbjct: 5   ILVVDDEQPIVTLLSYNLEKAGFQV--VAAYDGEEALEKVAFEQPALIILDLMLPKLDGV 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR  
Sbjct: 63  EVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTD 122

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++   AE       G + +F +  +  V  +   L  +E  +L +L  ++G+ + + Q+ 
Sbjct: 123 LAQPAAEPSERLVIGDLEIFPERYEAAVGDKPLELTPKEFELLLHLARHKGRVLTRDQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           SA++  +D A +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 183 SAVWN-YDFAGDTRIVDVHISHLREKIEEDTKKPVYIKTVRGLGYKLE 229


>gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
 gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
          Length = 235

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G      N  +    L  S +  +  ++  L       +
Sbjct: 5   ILIIEDEHSIATLLSYNLVQAGFETMIANDGKQGYELALSEKPSLIVLDLMLPS--MDGV 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R      P+I ++        +   + G DD + KP   RE++AR+ A+ RR  
Sbjct: 63  EVCKSLRQQKVNTPIIMLTAKGDEFDKVLGLELGADDYMTKPFSPREVVARIKAVLRRAS 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + ++     G + V+ D  +  +  E      +E  +L YLM N+ + + + Q+
Sbjct: 123 NVPTPQQDASQPISLGKLDVYPDRFEVFLNKEQLEFTPKEFELLVYLMENKNRVLTRDQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            SA++  +D A +  +V+ HIS LR+K+         + + R LGY  +
Sbjct: 183 LSAVW-KYDFAGDTRIVDVHISHLREKIEENSRKPAFIKTIRGLGYKFE 230


>gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC
           19977]
 gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus]
          Length = 228

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G      N           A  D+  ++  L   G    +
Sbjct: 5   LIVEDEDSLADPLAFLLRKEGFEATIVNDGPSALAEFERAGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRAKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDS 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   E GP+R+  D     V GE   LP +E  +LEYL+ N G+ + + Q+   
Sbjct: 123 EETASGDGVLEAGPVRMDVDRHTVSVNGEAITLPLKEFDLLEYLIRNSGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVHLVTVRGLGYKLE 227


>gi|145220688|ref|YP_001131366.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145213174|gb|ABP42578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 228

 Score =  254 bits (650), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADA 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L V++   E GP+R+  +     V G    LP +E  +LEYLM N G+ + + Q+   
Sbjct: 123 DDLGVADGVLEAGPVRMDVERHVVSVNGAPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+ +    +PV   + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIESDPA-NPVHLVTVRGLGYKLE 227


>gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
 gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
          Length = 238

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 101/232 (43%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      +  + L  S + D+  ++  L       +
Sbjct: 5   ILVVDDEQSIVTLLQYNLQQAGYEVITAMDGQEGKDLAISEKPDLIVLDLMLP--KLDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 63  EVCKQLRQQKIATPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQ 122

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                AE           G +++F    +   + E+  L  +E  +L YL  N+ + + +
Sbjct: 123 FVPEAAEEKTEDGDSLRIGGLKIFPQHYEAYFEDELLELTPKEFELLLYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 183 DQLLSAVWN-YDFAGDTRIVDVHISHLREKIETNTKKPVYIKTIRGLGYKLE 233


>gi|120401846|ref|YP_951675.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954664|gb|ABM11669.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 228

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEATVVADGPSALAEFERAGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDA 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               + +   E GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   
Sbjct: 123 DDAGIGDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVHLVTVRGLGYKLE 227


>gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
 gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
          Length = 238

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G ++E     E         + D+  ++  L       +
Sbjct: 5   LLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLP--KMDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 63  EVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQ 122

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +            R   G +++  D  +     E   L  +E  +L YL   +G+ + + 
Sbjct: 123 IIAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           Q+ SA++  +D A +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 183 QLLSAVWN-YDFAGDTRIVDVHISHLREKIEQNTRKPVYIKTIRGLGYKLE 232


>gi|253999965|ref|YP_003052028.1| two component transcriptional regulator PhoB [Methylovorus sp.
           SIP3-4]
 gi|313201938|ref|YP_004040596.1| two component transcriptional regulator PhoB [Methylovorus sp.
           MP688]
 gi|253986644|gb|ACT51501.1| two component transcriptional regulator PhoB, winged helix family
           [Methylovorus sp. SIP3-4]
 gi|312441254|gb|ADQ85360.1| two component transcriptional regulator PhoB, winged helix family
           [Methylovorus sp. MP688]
          Length = 228

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G +     S+E  + L   A  D+  ++  L   G   +
Sbjct: 5   ILIVEDEPAIQELLALNLTQAGHNPIRALSVEQAQMLIREALPDLIILDWMLP--GMSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R +++      +P+I ++        +   + G DD V KP   RE+ AR+ A+ RR
Sbjct: 63  EFARKLKSDEFTKAIPIIMLTARGEEADKVKGLEVGADDYVTKPFSPRELNARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  E G +R+          G    L   E R+L YLM+N  +  +++Q+   
Sbjct: 123 RAPQMTDDPIEVGGLRLDPVTHRVTGNGTTLDLGPTEFRLLHYLMSNPERVHSRSQVLDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VE+  V+ HI +LR  L +    D + + R +GY  
Sbjct: 183 VWGDR-VFVEDRTVDVHIRRLRLALADSGHEDLIQTVRGVGYRF 225


>gi|229195595|ref|ZP_04322361.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228587844|gb|EEK45896.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 218

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   + +       +   D   ++  +       L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWEEAENGKEALKKLETNHYDFVVLDIMMPE--MDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  EV GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|333026940|ref|ZP_08455004.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746792|gb|EGJ77233.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 276

 Score =  254 bits (649), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++             + R D+  ++  L   G   LE
Sbjct: 20  LVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLP--GMDGLE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R    VP+I ++        +   + G DD V KP   RE++ RV ++ RR +  
Sbjct: 78  VCRRMRERHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRPD 137

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +    G + +    R     G    L  RE  +L + + + G+  ++ ++   ++G 
Sbjct: 138 PAPDPVRLGRLALDPTARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWGW 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             E  + + V  HI +LR K+ +       + +   +GY  +
Sbjct: 198 --EFGDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE 237


>gi|16077443|ref|NP_388257.1| two-component response regulator YclK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308189|ref|ZP_03590036.1| hypothetical protein Bsubs1_02118 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312511|ref|ZP_03594316.1| hypothetical protein BsubsN3_02104 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317448|ref|ZP_03598742.1| hypothetical protein BsubsJ_02123 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321710|ref|ZP_03603004.1| hypothetical protein BsubsS_02134 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396952|sp|P94413|YCLJ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yclJ
 gi|1805445|dbj|BAA09007.1| yclJ [Bacillus subtilis]
 gi|2632676|emb|CAB12183.1| two-component response regulator [YclK] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 227

 Score =  254 bits (649), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 29/238 (12%)

Query: 2   FVLIDDRALV---------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++I+D   V         K+G+ A F  DG+  EG+     E W       D+  ++  
Sbjct: 3   ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGL--EGYQRFTEENW-------DLIILDIM 53

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L       + + R IR  S VP+I ++   +    +  F+ G DD V KP     ++AR+
Sbjct: 54  LPS--MDGVTICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARI 111

Query: 113 AAIYRRLKVS------NNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            A+ RR K +       +  ET    +    R+  + GE    L  +E  +L YL+ N  
Sbjct: 112 KAVIRRYKATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPR 171

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  ++ Q+   ++G +    +E  V+ HI +LRKKL ++     + +   +GY  D +
Sbjct: 172 QVFSREQLLEQVWG-YQFYGDERTVDVHIKRLRKKLASE-DKPFLYTVWGVGYKFDED 227


>gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 234

 Score =  254 bits (649), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +  +      +  + D+  ++  L   G+  L
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLP--GKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     GPI + S+      + E   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSHPTLIVTRRGVGYYL 228


>gi|24373128|ref|NP_717171.1| phosphate regulon response regulator PhoB [Shewanella oneidensis
           MR-1]
 gi|24347327|gb|AAN54615.1|AE015602_1 phosphate regulon response regulator PhoB [Shewanella oneidensis
           MR-1]
          Length = 239

 Score =  254 bits (649), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    L      D+  ++      G   +
Sbjct: 15  ILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFP--GGSGI 72

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + ++      Q+P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 73  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 132

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      +   + +        V   V  +   E R+L + M +  +  ++ Q+   
Sbjct: 133 SAPTRLEETIDVQGLLLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKAVEESGHDRLIQTVRGAGYRF 235


>gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 229

 Score =  254 bits (649), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 106/225 (47%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG  +    + + EE L+ +   +   I   L+      L
Sbjct: 5   ILIVDDEPLLVKGLKYSLEQDGYEI--LTAFDGEEALEKAKIANADLILLDLMLPKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR +SQ P+I ++      + +   + G DD + KP +  E+ AR+ A+ RR + 
Sbjct: 63  QVCQQIRLNSQTPIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVLRRYQS 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S+   E         ++ + GR   ++GE   L  +E  +L  L +N GK  ++ ++   
Sbjct: 123 SDKPIEERVIKIDDFKINTLGRKVSLKGEEVNLTAKEFDLLLLLASNPGKIYSREELLEI 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G ++   +   V+ HI +LR+K+  N    + + +K  +GY  
Sbjct: 183 IWG-YEYFGDLRTVDVHIRRLREKIEINSSNPEYILTKWGVGYYF 226


>gi|257453592|ref|ZP_05618882.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enhydrobacter aerosaccus SK60]
 gi|257449050|gb|EEV24003.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enhydrobacter aerosaccus SK60]
          Length = 232

 Score =  254 bits (649), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 97/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  +      G      + +     L    R ++  ++  L   G   +
Sbjct: 6   ILVVEDEPAIREMIVTTLEMAGFDCLQASEVSQAHHLVVDHRPNLILLDWMLP-NGLSGI 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKKDEMLSEIPIIMLTAKGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRR 124

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +     + G + +    +      +   +   E R+L + M++  +   +TQ+   
Sbjct: 125 SSALSGEKPIDVGGLSLDPASQRVSANNKAVDIGPTEYRLLAFFMSHPERAYTRTQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  ++ HI +LRK L      D + + R  GY  
Sbjct: 185 VWGG-NVYVEDRTIDVHIRRLRKVLEPFGFADYIQTVRGTGYRF 227


>gi|56461211|ref|YP_156492.1| positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           loihiensis L2TR]
 gi|56180221|gb|AAV82943.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           loihiensis L2TR]
          Length = 228

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G      N  +      +    D+  ++  L   G   L
Sbjct: 5   ILIVEDEAPIREMLSFVMEQHGYQAVEANDFDAAVDKIAEPYPDMVLLDWMLP--GGSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + I+       +P+I ++     +  +   + G DD + KP   +E++AR+ A++RR
Sbjct: 63  QLAKKIKGDDFTRNIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELMARMRAVFRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  +   E   +++        V  +   +   E ++L + M +  +  ++ Q+   
Sbjct: 123 VAPTVLDEPLEVEGLKLDPVSHRISVDDKGIDMGPTEFKLLHFFMTHPERVYSREQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        + + R +GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALTEHGYDRLIQTVRGVGYRF 225


>gi|319650220|ref|ZP_08004366.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
 gi|317398051|gb|EFV78743.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
          Length = 233

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 104/236 (44%), Gaps = 29/236 (12%)

Query: 2   FVLIDDRALV---------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++++D   V         K+GY  +F  DG   +GF     E W       D+  ++  
Sbjct: 3   ILVVEDNESVCSMLEMFFMKEGYHGVFVHDG--QQGFEHFNKERW-------DLLIVDWM 53

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L       + L R IR  S+VP+I ++   S    +   + G DD V KP     ++AR+
Sbjct: 54  LPI--MDGVTLCRKIRELSKVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLTLMARI 111

Query: 113 AAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            A+ RR +     A+      +   ++  + R+    G++   L  +E  +L YL+ +  
Sbjct: 112 KAVTRRFQAETGSADEPHYVASEYFKISKESREAYYNGQLLKNLTPKEFDLLYYLVKHPK 171

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + Q+  +++G +    +E  V+ HI +LRKK+  +     + +   +GY  D
Sbjct: 172 QVFTREQLLDSVWG-YQFYGDERTVDVHIKRLRKKIGTE-EQPFIHTVWGVGYKFD 225


>gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E         + D+  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVEKAKDKKYDIILLDLMLP--KMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIREFSNVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAGSD 123

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         + G +R+  +GR   + G+   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 HEEKEKAKSIQVGDLRMDCEGRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYF 227


>gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 230

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 8/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +      E    L S    D+  ++  L       +E
Sbjct: 6   LVVEDEDALATLLHYNLDKEGYRVAVAGDGEEALTLASERAPDLVILDWMLPKV--SGIE 63

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R       VP+I ++        +   D+G DD V KP    E+ ARV A+ RR+
Sbjct: 64  VCRRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVMRRI 123

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +++R   G I +       +  G+   L   E R+L+YLM + G+  ++ Q+  A+
Sbjct: 124 RPGLADDRITVGDIVIDRVAHRVKRNGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G  D  VE   V+ HI +LRK L      DP+ + R  GYS+D +
Sbjct: 184 WG-SDVYVEARTVDVHIGRLRKALNGSSDGDPIRTVRSAGYSLDLD 228


>gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 229

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    S    E L+   RE    +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVAAS--GPEALEVFDREGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S+VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRSLRQRSKVPVIMLTAKDSEIDKIVGLELGADDYVTKPFSSRELVARIRAVLRRRGDA 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S++    GP+R+  D     V+GE   LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEPSSSVLAAGPVRMDVDRHVVTVRGEKVQLPLKEFELLEVLLRNAGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ HI +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEPDPSKPRYILTVRGLGYKFE 225


>gi|127513677|ref|YP_001094874.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126638972|gb|ABO24615.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 241

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    + S    D+  ++      G   +
Sbjct: 17  ILIVEDELAIREMLAFVLEQHGFTTTTAEDFDSALDMLSEPYPDLVLLDWMFP--GGSGI 74

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + +R       +P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 75  QLAKKLRQDEFTRHIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVMRR 134

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      +   + +        V  +V  +   E R+L + M +  +  ++ Q+   
Sbjct: 135 AAPTALEEPIDVQGLVLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 195 VWGT-NVYVEDRTVDVHIRRLRKAVEPSNHDRLIQTVRGAGYRF 237


>gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 225

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +E     E    L    R D+  ++  L   G   L
Sbjct: 5   ILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLAREHRPDLIILDWMLP--GMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R     P++ ++   +LQ  +   D+G DD + KP    E+LAR+ A+ RR ++
Sbjct: 63  EVCQRLRTLCNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALLRRTQM 122

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + + +  R         PL  +E  +LE  + +  + + +  IF  ++G 
Sbjct: 123 ERAPVLSFADLTLDTSTRQATRGNRTIPLTAKEYDLLELFLRHPRQVLTREMIFDRVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E NV++ +I  LR+KL +      + + R +GY +
Sbjct: 182 YDFGGESNVLDVYIRYLRQKLESDGEPRLLHTVRGVGYVL 221


>gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 228

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++         +G  ++     E      ++    +  ++  L        
Sbjct: 8   ILLVDDEPSLQKMLTHALEREGFQVQAVGDGEAALEAFNTFEPHLIILDIMLP--KLDGT 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP++ ++        +   + G DD V KP   RE++ARV AI RR +V
Sbjct: 66  EVCRRIRAQSDVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMRRAQV 125

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +      +++    R   V G    L   E  +L  L +N GK  +++ +   +
Sbjct: 126 PAGQRPDELNYDGLKINLPSRRVSVDGREVDLTYTEFELLVTLASNPGKVFSRSALLRRV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +G  DE  +E  V+ HI  LR+K+ R+    + + + R +GY  
Sbjct: 186 WG--DEFRDERTVDVHIRHLREKIERDPRNPEFIHTARGVGYVF 227


>gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4]
          Length = 238

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 102/232 (43%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G ++   N  E    L  S + D   ++  L       +
Sbjct: 5   ILVVDDEQSIVTLLKYNLEQAGYTVLTANDGEEGYELAMSDKPDFIVLDLMLP--KMDGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 63  EVCKNLRQQKMMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARIKAILRRTQ 122

Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                        +  + G ++V+ +  +  +  E+  L  +E  +L YL  N+G+ + +
Sbjct: 123 TLIQSAVEEQDPKDYLKVGELKVYPEHYEAFIGEELLELTPKEFELLLYLTENKGRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 DQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQNTKKPIYIKTIRGLGYKLE 233


>gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 236

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 97/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + +        +    E     E    +    R  +  ++  L   G    
Sbjct: 7   ILIVDDDSNIAELISLYLLKECYETEIVGDGEEALRVFPEFRPHLVLLDLMLP--GMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREMRSASQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQT 124

Query: 122 S-----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           S               E   + V          G    +P +E  +L +L ++  +   +
Sbjct: 125 SPVPAALHTDHQGEYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            Q+   I+G ++   +   V+ HI +LR+K+++  G+    +   +GY  + 
Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHAGWAL-TTVWGIGYKFEV 234


>gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
 gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E         + D+  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKENKYDIILLDLMLP--KMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   D G DD + KP +  E+ AR+ AI RR +  
Sbjct: 64  VCQQIREFSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARSE 123

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E G +++  + R   + G+   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 HEEKEKAKTIEAGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYF 227


>gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
          Length = 234

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 103/233 (44%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG+ ++     E    +  +   D+  ++  L       +
Sbjct: 5   ILVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALEMIKTNTYDMVLLDLMLP--KIDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I ++        +   + G DD + KP +  E+ AR+ AI+RR   
Sbjct: 63  AVCQQVREFSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARMKAIFRRSGG 122

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           S +             +G +++  D R  ++ G    L  +E  ++E L +N GK  ++ 
Sbjct: 123 SESEGRQSEAARKVISSGSLKLDCDARTLQISGREIYLTAKEFDLMELLASNPGKVYSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            + + ++G +D   +   V+ H+ +LR+K+  N      + +K  +GY    N
Sbjct: 183 SLLNTVWG-YDYPGDVRTVDVHVRRLREKVEPNASDPKYIQTKWGVGYYFGQN 234


>gi|119468896|ref|ZP_01611921.1| phosphate regulon transcriptional regulatory protein phoB
           [Alteromonadales bacterium TW-7]
 gi|119447548|gb|EAW28815.1| phosphate regulon transcriptional regulatory protein phoB
           [Alteromonadales bacterium TW-7]
          Length = 229

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++  + +   +G         +           D+  ++  L   G   ++
Sbjct: 6   LVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLP--GGSGIQ 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +  + +    Q+P+I ++     +  +   + G DD V KP   +E++AR+ A+ RR+
Sbjct: 64  IAKKFKQNEHTRQIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++     E   +R+         +G    +   E R+L + M +  +  ++ Q+   +
Sbjct: 124 SPTSLEEAIEVHGLRLDPISHRVTSEGNELDMGPTEFRLLHFFMTHPERVYSREQLLDHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  V+ HI +LRK +        V + R  GY  
Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAIGPLGHDRLVQTVRGAGYRF 225


>gi|302519214|ref|ZP_07271556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302428109|gb|EFK99924.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 290

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++             + R D+  ++  L   G   LE
Sbjct: 20  LVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLP--GMDGLE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +RA   VP+I ++        +   + G DD V KP   RE++ RV ++ RR +  
Sbjct: 78  VCRRMRARHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRPD 137

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +    G + +    R     G    L  RE  +L + + + G+  ++ ++   ++G 
Sbjct: 138 PAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWGW 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             E  + + V  HI +LR K+ +       + +   +GY  
Sbjct: 198 --EFGDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRF 236


>gi|83588943|ref|YP_428952.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83571857|gb|ABC18409.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 229

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +    +          + + D+  ++  L        
Sbjct: 7   ILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEKPDLIILDVMLPKV--DGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +RA   +P++ ++        +   + G DD + KP   RE++ARV AI RR+  
Sbjct: 65  EVCRSLRARGSMPILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRAILRRVAE 124

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + ++     G + +        V+G+   L  +E ++L+ L  NRG+  ++  +   +
Sbjct: 125 KQQQNDGIITVGDLVINPASHLVTVRGKPVDLTLKEYQLLQLLAENRGRVFSREALLERL 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   +   +   ++ HI  LR+K+  N      + + R +GY  
Sbjct: 185 W-EGEYYGDTRTIDVHIRHLREKIEANPSNPRYIITVRGVGYKF 227


>gi|187479560|ref|YP_787585.1| phosphate regulon two-component response regulator [Bordetella
           avium 197N]
 gi|115424147|emb|CAJ50700.1| phosphate regulon two-component response regulator [Bordetella
           avium 197N]
          Length = 232

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      E  + L  +   D+  ++  L   G   L
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLP--GMSGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +R       VP+I ++   + Q  +D  ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  SLARKLRDDERTRNVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  + G +++           +   +   E R+L + M +  +  +++Q+   
Sbjct: 123 RAPQLTDDIIDVGGLKLDPVTHRLSGDSQALQIGPTEFRLLHFFMTHPERVFSRSQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LRK L        V++ R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPTGHDAHVETVRGSGYRF 225


>gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
 gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
          Length = 240

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++  G      ++G  +E     E    L    + D+  ++  +       L
Sbjct: 11  ILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELAREGKFDLIILDLMMP--KIDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +  F+ G DD + KP +  E+ ARV A+ RR   
Sbjct: 69  QACMRIREFSNVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRALLRRSGA 128

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +  +   G IR+  + R     G    L  +E  ++E LM N G+  ++  + + 
Sbjct: 129 AVQHQAAGQLTVGHIRLDPNERSAWKDGVSVDLTAKEFDLMELLMRNPGRVYSRENLLNV 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ H+ +LR+KL  +      + +K  +GY +
Sbjct: 189 VWG-YEYIGDYRTVDVHVRRLREKLELDPANPQYIRTKWGVGYYL 232


>gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto
           BEST195]
 gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 236

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +       +    + D+  ++  L  K    +
Sbjct: 6   ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNK--DGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 64  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S+N    G + +F D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 124 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
 gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
          Length = 240

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 101/233 (43%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +E    L+ +     +   D   I   L+  G   +
Sbjct: 5   ILVVDDEPSISTLLQYNLEQAGFEVE--TKLDGQAGFDRAKEADFDLIILDLMLPGMDGM 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R     VP++ ++        +   + G DD + KP   RE+ ARV AI RR++
Sbjct: 63  DVCRQLRQEQIFVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVRAILRRIE 122

Query: 121 VSNN-----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +               +   + ++    +  V+ E+  L  +E  +L YL  ++G+ + 
Sbjct: 123 QTGGAVAKNEQGKGKSIQIADLTIYPQNYEVYVKKELLTLTPKEFELLVYLADHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+ +A++  ++   +  +V+ HIS LR K+  N      + + R LGY ++
Sbjct: 183 RDQLLNAVWN-YEFVGDTRIVDVHISHLRDKIEPNSKKPVYIKTIRGLGYKLE 234


>gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF
 gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis]
 gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis]
 gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 235

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   +       +    + D+  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNK--DGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S+N    G + +F D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 123 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 229


>gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
 gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
          Length = 233

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    + E    L +    D+  ++  L   G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYEVSAAATGEEGLELFTHGGIDLVLLDLMLP--GIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 62  TLCRRIREQSRVPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQS 121

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  +           G I +        V+GE    P +E  +LEYLM N+G+ + + Q+
Sbjct: 122 AQQQGSADDDVPLTCGDIVMRVGQHQVIVRGESVFFPLKEFELLEYLMQNKGRVLTRHQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
              I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 182 IDRIWGA-DYVGDTKTLDVHVKRVRAKIEEEPSHPKYLSTVRGLGYKID 229


>gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
 gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
          Length = 238

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 99/231 (42%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G ++E     E         + D+  ++  L       +
Sbjct: 5   LLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLP--KMDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 63  EVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQ 122

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +            R   G +++  D  +     E   L  +E  +L YL   +G+ + + 
Sbjct: 123 IIAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           Q+ SA++  +D A +  +V+ HIS LR+K+ +       + + R LGY ++
Sbjct: 183 QLLSAVWN-YDFAGDTRIVDVHISHLREKIEHNTRKPVYIKTIRGLGYKLE 232


>gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
 gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
          Length = 238

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E    + S+   D+  ++  L     + L
Sbjct: 4   ILVVDDEKPISDIVKFSLSKEGFEVVTAFDGEEGLAVFSAENPDLVILDLMLP--KIEGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  S VP+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVCREIRKTSNVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQHI 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + S N    G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 SPTEPDEEKSANEIVLGSLIIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY I
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYI 229


>gi|226329135|ref|ZP_03804653.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198]
 gi|225202321|gb|EEG84675.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198]
          Length = 229

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G         +           D+  ++  +   G   L
Sbjct: 5   ILVVEDETAIREMICFVLEQNGFQPIEAEDYDSALSFLIDPYPDLVLLDWMIP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + ++  S    +P+I ++     +  +   ++G DD V KP   +E++ARV AI RR
Sbjct: 63  QIIKQMKRESNTRDIPIIMLTAKGEEEDKVQGLETGADDYVIKPFSPKELVARVKAILRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           L    + +  E   + +         Q +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 LSPMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEEDGHDRMIQTVRGTGYRF 225


>gi|240146374|ref|ZP_04744975.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|257201483|gb|EEU99767.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|291535777|emb|CBL08889.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 230

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 100/228 (43%), Gaps = 10/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    + +    D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLP--KMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   S
Sbjct: 64  VCQHIREFSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAAS 123

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +       E G +++  + R   + G+   L  +E  +LE L+ N  K   +  + + 
Sbjct: 124 QPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           ++G ++   +   V+ H+ +LR+K+  N      V +K  +GY    N
Sbjct: 184 VWG-YEYPGDVRTVDVHVRRLREKIESNPSEPKYVHTKWGVGYYYSQN 230


>gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 234

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +     F  +G  +E     E       ++  D+  ++  L        
Sbjct: 5   ILVVDDERPIAEILKFSFEREGFEVEMAFDGEEAVAKARASDFDLVILDIMLP--KLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP++ ++        +   + G DD V KP   RE++ARV AI RR +V
Sbjct: 63  TVCREIRRFSTVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAILRRTRV 122

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++     G I +     +     ++  L  RE  +L +LMA+ G+  ++  
Sbjct: 123 AESSRSRTAADEILREGDITINLTSYEVRKGDKLLELTPREFELLRFLMAHAGQVFSREA 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+KL       + + ++R +GY  
Sbjct: 183 LLEEVWG-YDYYGDVRTVDVTVRRLREKLEENSARPEYIKTRRGVGYYF 230


>gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
 gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
          Length = 234

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 104/230 (45%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    S   EE L+   +  +  +   L+  G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAAAS--GEEGLELFTKGGIDLVLLDLMLPGIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 AVEASGAVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGYKID 230


>gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
 gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
          Length = 239

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 110/225 (48%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +     F ++G  +   +  +    L +    D+  ++  +  +G   +
Sbjct: 16  LLLVEDDPALAELLEYRFANEGYDVRVTSDGDEALLLAAEDVPDLVILDWMI--EGTSGI 73

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R   A + VP+I ++   +    +   ++G DD + KP   RE+LARVAA+ RR
Sbjct: 74  EVCRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARVAAVMRR 133

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++   +    E G + +         +G+   L   E R+L++ M + G+  ++ Q+   
Sbjct: 134 IRPVLAGESIEVGDLALDPVAHKVTRRGKTLKLGPTEYRLLKFFMESPGRVFSRNQLLDG 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  +  +E   V+ HI +LRK +  +   DPV + R  GYS++
Sbjct: 194 VWGT-ESDIELRTVDVHIRRLRKAIEIEGAKDPVRTVRSAGYSLE 237


>gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
 gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
          Length = 234

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 8/228 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D A +          +G  +   +  E    L +     +  ++  L       
Sbjct: 8   LILIVEDEADLVTLLKYNLEKEGFRVISASDGEEALLLANEQAPHLVLLDWMLPL--MSG 65

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +R        P+I ++        +   +SG DD + KP    E++AR+ A+ R
Sbjct: 66  LEVCRQLRRNPKTRDTPVIMLTARGEEADKVRGLNSGADDYIAKPFSPTELVARMRAVLR 125

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R    ++        + +          G    L   E R+L + M + G+  ++ Q+  
Sbjct: 126 RAAPGLAEELLRFADVVMDLAAHRVRRNGRDVHLGPTEFRLLRHFMQHPGRVFSREQLLD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++G  D  VE   V+ HI +LRK L      D + + R  GY++D N
Sbjct: 186 VVWG-HDVYVEPRTVDVHIRRLRKALNETDDQDLIRTVRSAGYALDQN 232


>gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 233

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 8/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +      E    L +  + DV  ++  L       +E
Sbjct: 6   LIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLVAEDQPDVVILDWMLPS--LSGIE 63

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R       +P++ ++        +   ++G DD ++KP    E+LARV A+ RR 
Sbjct: 64  VCRQLRRKPRTRDLPILMLTARGEESDRIRGLNTGADDYMSKPFSMPELLARVKALLRRA 123

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + ++         + +          G    L   E R+L++LM N G   ++ ++ +A+
Sbjct: 124 QPTSAKGTLSYSDVVMDLGAHRVTRGGRYIHLGPTEFRLLQFLMQNPGAVFSREELLNAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G  D  VE   V+ HI +LRK L  +   D + + R  GY++D N
Sbjct: 184 WGP-DIYVEPRTVDVHIRRLRKALNGEASTDLIRTVRAAGYALDTN 228


>gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 230

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 105/226 (46%), Gaps = 8/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +      E    + S    D+  ++  L       +E
Sbjct: 6   LVVEDEDALATLLHYNLDKEGYVVGVAGDGEEALTMASERAPDLVILDWMLPKV--SGIE 63

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R  S    VP+I ++        +   D+G DD V KP    E+ ARV A+ RR+
Sbjct: 64  VCRRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVLRRI 123

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +++R   G I +       + QG+   L   E R+L+YLM + G+  ++ Q+  A+
Sbjct: 124 RPGLADDRITVGDIVIDRVAHRVKRQGKEVHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G  D  VE   V+ HI +LRK L   +  DP+ + R  GYS+D +
Sbjct: 184 WG-SDVYVEARTVDVHIGRLRKALNGDVDGDPIRTVRSAGYSLDLD 228


>gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 237

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + N+ E          GP+ +  D    + +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 TANQEEGENETNEIVIGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|167624972|ref|YP_001675266.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354994|gb|ABZ77607.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 229

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    + +    D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVLEQHGFTTAAAEDYDSALAMLTEPYPDLVLLDWMFP--GGNGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + +R       +P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      +   +++        V  +V  +   E R+L + M ++ +  ++ Q+   
Sbjct: 123 SAPTCLEEIIDVQGLQLDPVSHRVTVNDQVLDMGPTEFRLLHFFMTHQERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVTPSGHDRLIQTVRGAGYRF 225


>gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 237

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + N+ E          GP+ +  D    + +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 TANQEEGENETNEIVIGPLVIRPDAYIVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|253995872|ref|YP_003047936.1| two component transcriptional regulator PhoB [Methylotenera mobilis
           JLW8]
 gi|253982551|gb|ACT47409.1| two component transcriptional regulator PhoB, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 235

 Score =  253 bits (647), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++         G +     S E    L      D+  ++  L   G   L
Sbjct: 5   ILVIEDEPAIQELLALNITQAGHNAIRALSGEIALDLMRETVPDLILLDWMLP--GMNGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +++      +P+I ++        +   + G DD V KP   RE+ AR+ A+ RR
Sbjct: 63  ELARKLKSDTYTKNIPIIMLTARGEEYDKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  E   +R+           +   L   E R+L + M N  +   ++Q+   
Sbjct: 123 RAPQMTDDPIELNGLRLDPTTHRVTGNQKTIDLGPTEFRLLHFFMTNSERVHTRSQLLDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VE+  V+ HI +LR  L      D + + R  GY +
Sbjct: 183 VWGDR-VFVEDRTVDVHIRRLRNALSASGHEDLIQTVRGAGYRL 225


>gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484]
 gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family
           [Thermocrinis albus DSM 14484]
          Length = 226

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +     +G ++E                 D+  ++  L       +
Sbjct: 4   ILLVEDDLYLGQMMVEGLRHEGFTVEWVQDGFTALRRVVEENYDLVILDIMLP--KFDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR    +P+I ++    ++  ++   +G DD + KP   +E+ AR+ A+ RR + 
Sbjct: 62  KVCRKIRETKDIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVLRRYRK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G +R+     +   +G+   L RRE  +L+ L  N  + V++ +I++ ++G  
Sbjct: 122 KEGVIMVGDLRIDPSAVEVTYRGQKIHLTRREFELLKLLAENANRVVSREEIYAKVWGYS 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E    N+V+ +I  LR KL +K     + + R  GY +
Sbjct: 182 HEEG-SNIVDVYIKNLRNKLGDKP-PRLIQTVRGYGYIL 218


>gi|197302877|ref|ZP_03167929.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
 gi|197298114|gb|EDY32662.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
          Length = 233

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +   + E       + + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTKMVYNGEDALAAFDTYQPNLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR +V
Sbjct: 65  QVCREIRAKSVTPIIMLSAKSEVFDKVLGLELGADDYIMKPFDAKEMVARVRAVLRRYQV 124

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E   + +          G+   +P +E  +L  L A+  +   + Q
Sbjct: 125 GRQAEPAREKTKCVEYEGLTINLTNYSVLCDGKNVEMPPKELELLYCLAASPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  +
Sbjct: 185 LLDRIWG-YEYIGDTRTVDVHIKRLREKIKDHPHWSL-STVWGIGYKFE 231


>gi|146309422|ref|YP_001189887.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145577623|gb|ABP87155.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 229

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     S +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S++    E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|260437716|ref|ZP_05791532.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292809739|gb|EFF68944.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 235

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E         + D+  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFETLIVNDGENALTAFFRFKPDLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR  +  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRRENNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYTA 124

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   K S    E   + +          G+   +P +E  +L +L  +  +   + 
Sbjct: 125 TQSNDTPEKPSGEYIEYPDLIINLSNYSVIYMGKPVDMPPKELELLYFLATSPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           Q+   I+G ++   +   V+ HI +LR+K+ +      + +   +GY  +
Sbjct: 185 QLLDHIWG-YEYVGDTRTVDVHIKRLREKIHDH-EKWSIGTVWGVGYKFE 232


>gi|126731218|ref|ZP_01747025.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
 gi|126708129|gb|EBA07188.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
          Length = 229

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D    ++        +G  +    + E    + +    D+  ++  L       +E
Sbjct: 9   LLVEDEPAQREVLSYNLEAEGFRVASAGNGEEALLMMAEENPDIVVLDWMLPNV--SGIE 66

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R I+       VP+I +S        +   ++G DD V KP    E++ARV A  RR 
Sbjct: 67  VCRQIKTKPETRNVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRA 126

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S    R E   I + S+       G+   L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPSAAGLRLEYEDIVLDSETHRVTRNGKPLKLGPTEFRLLTTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G D + + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALSQHGGQDLLRTVRGAGYAL 228


>gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A]
          Length = 234

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +   ++   EE L+   +  +  +   L+  G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAAST--GEEGLELFTKGGIDLVLLDLMLPGIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 AAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 232

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 101/228 (44%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    + +    +    +  +  ++  L        
Sbjct: 6   ILIVDDEEHIRELLRYNLEKEGYKIFCAENGKEALEIAKEKKPTLILLDVMLPQ--MDGY 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + IR     S  P+I I+        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  DVCKEIRKDNSISTTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAVLRR 123

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             LK +    +   +++  +  +    GE   L  +E ++LE L+ N+G+ + +  +   
Sbjct: 124 TLLKSTEEPFKFEGLKMDFEKHEVMKDGEKVDLTLKEFQLLEILIKNKGRVLTREYLLDK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           I+G ++   E   V+ HI  LR+K+ +       +++ R +GY  + N
Sbjct: 184 IWG-YEYIGETRTVDVHIRHLRQKVEDDDKNPKYIETIRGVGYRFNLN 230


>gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 239

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +           L  + R D+  ++  L   G   L
Sbjct: 4   ILVVDDEKNILELVRFNLEREGYQVLTALDGPQGLELARAERPDLIVLDVMLP--GMNGL 61

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +    A   +P+I +S        +   + G DD + KP   RE++AR+ A  RR
Sbjct: 62  EVCREMHRDAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARLRR 121

Query: 119 LKVSN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++             R + G + +  +     V G    L  +E  +L +L    G+  +
Sbjct: 122 IQKEEGREREAVPGGRLDFGRLVIDEEKFAVYVDGVKVDLTPKEFELLRFLARQPGRVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + Q+   ++G +D A +   V+ HI  +R+KL      D P+++ R +GY  
Sbjct: 182 REQLLEQVWG-YDYAGDSRTVDVHIRHIRQKLGRLSESDQPIETVRGVGYCF 232


>gi|225378285|ref|ZP_03755506.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
           16841]
 gi|225209852|gb|EEG92206.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    + +    D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENHYDMILLDIMLP--KMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   S
Sbjct: 64  VCQHIREFSDMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAGS 123

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +       E G +R+  + R   +  +   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 QPKKEDSKVIEAGDLRLDCESRRLFILNKEVNLTAKEFDLLELLVNNPNKVYSRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           ++G ++   +   V+ H+ +LR+K+  N      V +K  +GY
Sbjct: 184 VWG-YEYPGDVRTVDVHVRRLREKIEKNPSEPKYVHTKWGVGY 225


>gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 240

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 8/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D A +          +G  +      E    + +  + D+  ++  L       
Sbjct: 13  LVLVVEDEAALATMLRYNLEKEGYRVAEAADGEEALTVLAERKPDLVLLDWMLPS--LSG 70

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R IR        P+I ++        +   ++G DD + KP    E++ARV A+ R
Sbjct: 71  IEICRQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLR 130

Query: 118 RLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  + + +   G + +          G+   L   E R+L++ + + G   ++ ++  
Sbjct: 131 RAQPVSQKGQISWGDVSMDLASHRVVRAGKAIHLGPTEFRLLQFFLQHPGTVFSREELLD 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           A++G  D  VE   V+ HI +LRK L      D + + R  GY++D
Sbjct: 191 AVWGP-DIYVEPRTVDVHIRRLRKALNCDTEADIIRTVRAAGYALD 235


>gi|312794585|ref|YP_004027508.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312877755|ref|ZP_07737707.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795474|gb|EFR11851.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312181725|gb|ADQ41895.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 230

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 101/227 (44%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       S   D+  ++  L        
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLP--KLDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I I+        +   + G DD + KP   RE++AR+ A  RR   
Sbjct: 64  SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S ++     + G + +  +  + +  G+V  L  RE  +L++LM+ +G+  ++ ++   +
Sbjct: 124 SASQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +  ++   +   V+  + +LR+K+ +     + + +KR +GY  + N
Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229


>gi|225571365|ref|ZP_03780361.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
 gi|225159841|gb|EEG72460.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
          Length = 234

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       + + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYQPNLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          E   I +        V G    +P +E  +L +L ++  +   + 
Sbjct: 125 VPKAEEPAEDKGKCVEYPGIVINLTNYSVVVDGANVDMPPKELELLYFLASSPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHSTWGL-STVWGIGYKFEV 233


>gi|224988879|ref|YP_002643566.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|224771992|dbj|BAH24798.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
          Length = 227

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++S+   E+GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+      +PV   +   LGY ++
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVHLVTVCGLGYKLE 226


>gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 250

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 109/232 (46%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSARE---DVSAIEAFLI 54
            ++++D  L+++  +     +G     + +G  ++EF +  +S++ E   D+  ++  L 
Sbjct: 21  ILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDLMLP 80

Query: 55  GKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++R   + VP++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  Q--INGLDICRLLRHQGNAVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR ++SN       +   I +        V+G+   L  +E R+LE  M+   +  +
Sbjct: 139 ALLRRQRLSNLPLIPVLKYKEISLNPQECRVLVRGKEVNLSPKEFRLLELFMSYARRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLLDQVWGP-DFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249


>gi|114563933|ref|YP_751447.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114335226|gb|ABI72608.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 229

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +++    +    G +       +    L      D+  ++      G   +
Sbjct: 5   ILIVEDESAIREMLTFVMDQHGFTTAAAEDFDSAIELLKEPYPDLILLDWMFP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + ++      Q+P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      +   +++        V   V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SAPTRLEETIDVQGLQLDPVSHRVTVGDAVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEEGGHDKLIQTVRGAGYRF 225


>gi|297545525|ref|YP_003677827.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843300|gb|ADH61816.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 227

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 94/225 (41%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G  +E     +       +    +  ++  L   G   +
Sbjct: 7   IYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQTNPPRLVILDIMLP--GIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S+VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRRYEP 124

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++         + V         +G+   L  +E  +L +L  +  +   + Q+   ++
Sbjct: 125 ESDERRAVSYPDLYVSLSEYKVVYKGKNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D   +   V+ HI +LR+K+ + + +    +   +GY  + N
Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKIGDGINWKL-TTVWGVGYKFEVN 227


>gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 235

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    +   EE L+   +  +  +   L+  G    
Sbjct: 5   ILIVEDEESYREPLVYQLTREGYDVSA--AATGEEGLELFTKGGIDLVLLDLMLPGLDGT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD + KP   RE+LAR+ A+ RR ++
Sbjct: 63  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 122

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                E          G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 123 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+    G    + + R LGY ID
Sbjct: 183 LIDRIWG-SDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKID 231


>gi|220929311|ref|YP_002506220.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999639|gb|ACL76240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 228

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   + +        +G  +   +N L   +  +      +  ++  L   G    
Sbjct: 8   LIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQT-PSLVVLDIMLP--GIDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR  S +P+I ++        +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRKVSSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRRYEY 124

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V         + +        ++G +  LP +E  +L +L +N  K   + Q+   ++
Sbjct: 125 KEVDTQEVAFPNLIINKSNYTIRLKGNLIELPPKELELLFFLASNPNKVFTREQLLERVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   +   V+ H+ ++R+K+  +     + +   +GY  + 
Sbjct: 185 G-FDFYGDSRTVDVHVKRVREKIDLEGQPWQLKTVWGVGYKFEV 227


>gi|47231509|gb|AAT12781.1| PhoB [Alcaligenes faecalis]
          Length = 236

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      E  + L  +   D+  ++  L   G   +
Sbjct: 5   ILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQILIRAELPDLILVDWMLP--GSSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +R+      +P+I ++   S Q  +D  ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  NLARKLRSDERTRHIPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELIARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++    G +++         QG    +   E R+L + M +  +   ++Q+   
Sbjct: 123 RAPQLTDDVISIGNLQLDPSTHRLSSQGMALTIGPTEFRLLHFFMTHTERVFTRSQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LRK L        +++ R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPSGHDKHIETIRGSGYRF 225


>gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 234

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    +   EE L+   +  +  +   L+  G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSA--AATGEEGLELFTKGGIDLVLLDLMLPGIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|116073054|ref|ZP_01470316.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9916]
 gi|116068359|gb|EAU74111.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9916]
          Length = 246

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +++        +G S+    N  E    L    +E V  I   L+  G   
Sbjct: 18  LLVVEDDDSIRETVDEALQAEGFSVRSCSNGAEALANLTMGNQEPVDLIVLDLMLPGLGG 77

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +R ++   P++ IS   S    +   + G DD + KP   RE++AR  A+ RR 
Sbjct: 78  LDVCRQLRGNNITTPILVISARDSETDRVLGLEVGADDYLVKPFGMRELVARCRALLRRT 137

Query: 120 K-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         +N      + ++ +       G+   L  +E +ILE  M +  +  ++ Q
Sbjct: 138 QQKPQQDEQRSNVLSHDNLCLYPEECRVTRDGQELTLSPKEYKILELFMQHPKRVWSRDQ 197

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G+ D   +   V+ HI  LR+K+         + + R  GY  
Sbjct: 198 LLEKVWGI-DFVGDTKTVDVHIRWLREKIESEPSSPKHIRTVRGFGYRF 245


>gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
 gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
          Length = 234

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    +   EE L+   +  +  +   L+  G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSA--AATGEEGLELFTKGGIDLVLLDLMLPGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD + KP   RE+LAR+ A+ RR ++
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 121

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                E          G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+    G    + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKID 230


>gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 236

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 104/231 (45%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            +++DD   + D        +G ++  + + + EE L+       D+  ++  L  +   
Sbjct: 5   ILVVDDEKPIADILQFNLTKEGYTV--YCAYDGEEALEKVEEVQPDLIVLDIMLPKR--D 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR 
Sbjct: 61  GMEVCREVRKKYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRH 120

Query: 120 KVS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + +         +N    G + +  D      +GE   L  RE  +L YL  + G+ + +
Sbjct: 121 QQTPAAPGEEEESNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 181 EHLLETVWG-YDYYGDVRTVDVTVRRLREKVEDNPSHPEWIVTRRGVGYYL 230


>gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911]
 gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911]
          Length = 237

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 102/231 (44%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +      E  +      R D+  ++  L       +E
Sbjct: 6   LVVDDEQSIVTLLEYNLKQAGYEVITAMDGESGKDFALQERPDLIVLDLMLP--KLNGIE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR ++
Sbjct: 64  VCKQLRQEKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQL 123

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +  + E           G +++F +  +     E+  L  +E  +L YL  N+G+ + + 
Sbjct: 124 TAGQQEQAEEDSDSIRIGGLKIFPEHYEAFFSEELLELTPKEFELLLYLAQNKGRVLTRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           Q+ SA++  +D A +  +V+ H+S LR+K+         + + R LGY ++
Sbjct: 184 QLLSAVWN-YDFAGDTRIVDVHVSHLREKIEENTKKPAYIKTIRGLGYKLE 233


>gi|307265089|ref|ZP_07546649.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919887|gb|EFN50101.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 227

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G  +E     +            +  ++  L   G   +
Sbjct: 7   IYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIMLP--GIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S+VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++         + V         +G+   L  +E  +L +L  +  +   + Q+   ++
Sbjct: 125 ESDEKQAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D   +   V+ HI +LR+K+ +   +    +   +GY  + N
Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKMGDGPNWKL-TTVWGVGYKFEVN 227


>gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 238

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALHKATTERPDLIILDLMLP--KMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + +         N      +R+  +  +   QGE   L  +E  +L YL  N+G+ + + 
Sbjct: 123 LQDEPVSEVQDENSINIYDLRILPEFYEAYFQGEKLELTPKEFELLVYLARNKGRVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 QLLSAVWN-YDFAGDTRIVDVHISHLRDKIEKNTKKPAYIKTIRGLGYKLE 232


>gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 226

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L G +G  +E  ++    + +    R     +   L   G+   
Sbjct: 4   ILIVEDEESFSDPLSYLLGKEGFEVEVVDN--GLDAITEFDRNGADLVLLDLQLPGQSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   +    +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 62  EVCRQLRQRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N  + GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEELITNTVQAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGYKFE 225


>gi|229016415|ref|ZP_04173357.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022644|ref|ZP_04179169.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228738653|gb|EEL89124.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744823|gb|EEL94883.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 233

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILKKEGFSHITTATSAELALSLTEQNNYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKVSGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +      +    G   +     +  V G V     +  ++L +   N     +K +I+
Sbjct: 124 QQSVQEQKTHSISFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEEIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230


>gi|258512529|ref|YP_003185963.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 239

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 106/231 (45%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +++DD A ++      F   G  +E  +     +E+  Q +++ D+  ++  L   G   
Sbjct: 5   LVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLP--GMDG 62

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R    ++P+I ++        +   + G DD V KP   RE++AR  A+ RR 
Sbjct: 63  LEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRT 122

Query: 120 KVSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +     A+          G I +     +  V+G++     +E  +L+Y M N    +++
Sbjct: 123 ESREEDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q+   ++G +  A +  +V+ H+S LR+K+ +       + + R +GY  
Sbjct: 183 DQLLDRVWG-YSAATDTRIVDVHVSHLREKIEDDSKNPKYIRTVRGIGYKF 232


>gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD + ++        + G   +   + +        A  D   ++  +       + 
Sbjct: 7   LLVDDESDMRQLVGMYLDNFGYEWDEAENGKEALLKLEEAHYDFVILDIMMPE--MDGIA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S +P+I ++        ++   +G DD V KP    E++AR+ A+ RR   +
Sbjct: 65  VCKEIRKTSDIPIIFLTAKGEEWNRVNGLRNGADDYVVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E GPIR+    R  E  G++  L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 GQQEELEFGPIRMNEKSRKAETNGKIISLTVKEFDLLYFLCQHHGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG--NCIQTVWGVGYKFEV 223


>gi|197283966|ref|YP_002149838.1| phosphate regulon transcriptional regulator [Proteus mirabilis
           HI4320]
 gi|194681453|emb|CAR40291.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis HI4320]
          Length = 229

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G         +           D+  ++  +   G   +
Sbjct: 5   ILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + ++  +    +P+I ++     +  +   ++G DD V KP   +E++ARV AI RR
Sbjct: 63  QVIKQMKRENNTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           L    + +  E   + +         Q +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 LSPMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEQDGHDRMIQTVRGTGYRF 225


>gi|317404463|gb|EFV84875.1| response regulator [Achromobacter xylosoxidans C54]
          Length = 232

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      +  + L  +   D+  ++  L   G   L
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +R       VP+I ++   S Q  +D  ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  AMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  + G +++           +   +   E R+L + M +  +  +++Q+   
Sbjct: 123 RAPQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LRK L        V++ R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225


>gi|311103716|ref|YP_003976569.1| phosphate regulon transcriptional regulatory protein PhoB
           [Achromobacter xylosoxidans A8]
 gi|310758405|gb|ADP13854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Achromobacter xylosoxidans A8]
          Length = 232

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      +  + L  +   D+  ++  L   G   L
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +R       VP+I ++   S Q  +D  ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  AMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  + G +++           +   +   E R+L + M +  +  +++Q+   
Sbjct: 123 RAPQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LRK L        V++ R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225


>gi|260427208|ref|ZP_05781187.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
 gi|260421700|gb|EEX14951.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
          Length = 229

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A  ++        +G  +    + E    +      DV  ++  L       +E
Sbjct: 9   LVVEDEAAQREVLRYNLEAEGFRVAAAGNGEEALMMMDEESPDVIVLDWMLPN--LSGIE 66

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R I+   +   VP+I +S        +   ++G DD V KP   RE++ARV A  RR 
Sbjct: 67  VCRQIKTRPETRGVPVIMLSARSEEVDRIRGLETGADDYVVKPYSLRELMARVRAQLRRA 126

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    R E   I + ++       G+   L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPAAAGLRLEYEDIVLDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALGVHGGGDPLRTVRGAGYAL 228


>gi|326390847|ref|ZP_08212399.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993106|gb|EGD51546.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 227

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G  +E     +            +  ++  L   G   +
Sbjct: 7   IYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQSALKKIQEKPPKLVILDIMLP--GIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S+VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++         + V         +G+   L  +E  +L +L  +  +   + Q+   ++
Sbjct: 125 ESDEKQAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D   +   V+ HI +LR+K+ +   +    +   +GY  + N
Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKMGDGPNWKL-TTVWGVGYKFEVN 227


>gi|325661912|ref|ZP_08150532.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085778|ref|ZP_08334861.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471764|gb|EGC74982.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406701|gb|EGG86206.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 228

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG+ +      E    L  S   D+  ++  L        
Sbjct: 5   ILVVDDEKLIVKGIRFSLEQDGMEVTAAYDGEEALALAKSGEFDLILLDVMLP--KLTGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S VP+I ++        +   + G DD V KP +  E+ AR+ AI RR K 
Sbjct: 63  EVCQQVREFSDVPIIMLTAKGDDIDKIMGLEYGADDYVTKPFNILEVKARIKAIIRRTKK 122

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N    G +++  + R   +      L  +E  +LE L  N+ K  ++ ++ + 
Sbjct: 123 DRPEEQKNLIVKGEMKLDCESRRVFIGEREVNLTAKEFDMLELLALNQNKVYSREKLLNL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G +D   +   V+ HI +LR+K+ +       V +K  +GY  
Sbjct: 183 VWG-YDYPGDARTVDVHIRRLREKIESHPSDPKYVHTKWGVGYYF 226


>gi|46810476|gb|AAT01619.1| PhoB [Pseudomonas stutzeri]
          Length = 229

 Score =  252 bits (645), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++  +      G       + +    L    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     +  P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S +  E G + +        + G+   +   E R+L++ M ++ +   ++Q+   
Sbjct: 124 ATPVDSESPIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRSQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 229

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 105/226 (46%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + +  +    +D      F+    E+ + S  R D+  ++  L   G+   
Sbjct: 5   ILVVDDDSNICELLVVYLEEDFQVKTVFDGNNLEQ-VISEYRPDLILLDVMLP--GKNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR   ++P+I +S        +   + G DD + KP   RE++ARV A+ RR++ 
Sbjct: 62  DICREIRDKYEIPIIFLSAKGEEIDKVLGLEFGADDYITKPFSPREMVARVKAVLRRVQN 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +    +      + +  + R  +V      L  +E  IL  +  + GK   + +I + I
Sbjct: 122 RSGKKRDELIFPHLVIDLEARTVQVNNSYVDLTPKEFDILVLMARHNGKVFTREEILNRI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
           +G +D A E   V+SHI ++R+K+    G  + + +   LGY  + 
Sbjct: 182 WG-YDFAGETRAVDSHIKRIRQKIEKIPGAPEYLHTVWGLGYRFEV 226


>gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 104/221 (47%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G ++    + +    +  + + D+  ++  +        
Sbjct: 4   ILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPE--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F+ G DD + KP    E++ARV A+ +R ++
Sbjct: 62  ELCRELRDYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++  + G + +     +  +  +   LP +E  +L  L +  GK   + ++   I+G 
Sbjct: 122 TTSQIVQIGHLSLNRKTYECRLGDQEITLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 181 YDYEGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 221


>gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 239

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 107/231 (46%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +++DD A ++      F   G  +E  +     +E+  Q +++ D+  ++  L   G   
Sbjct: 5   LVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLP--GMDG 62

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R    ++P+I ++        +   + G DD V KP   RE++AR  A+ RR 
Sbjct: 63  LEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRT 122

Query: 120 KVSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +   + A+          G I +     +  V+G++     +E  +L+Y M N    +++
Sbjct: 123 ESREDDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q+   ++G +  A +  +V+ H+S LR+K+ +       + + R +GY  
Sbjct: 183 DQLLDRVWG-YSAATDTRIVDVHVSHLREKIEDDSKNPKYIRTVRGIGYKF 232


>gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
 gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
          Length = 265

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G  ++     +  E   S    D+  ++  L   G   L
Sbjct: 30  ILIVEDEAALSMLLAYNLEAEGFVVDRVERGDEAEIRLSETMPDLVILDWMLP--GVSGL 87

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +RA      +P+I ++        +     G DD V KP    E++ARV ++ RR
Sbjct: 88  EICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVRSLLRR 147

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +          G + +          G    L   E R+LE+LM   G+  ++ Q+  +
Sbjct: 148 ARPDRVAAVLSAGDLELDRQNWRVRRTGRDVHLGPTEFRLLEHLMERPGRVFSRAQLLDS 207

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++GL  E ++E  V+ H+ +LRK L      DP+ + R  GYS D
Sbjct: 208 VWGLSAE-IDERTVDVHVGRLRKALTAPGERDPIRTVRGAGYSFD 251


>gi|321314045|ref|YP_004206332.1| two-component response regulator YclK [Bacillus subtilis BSn5]
 gi|320020319|gb|ADV95305.1| two-component response regulator (YclK) [Bacillus subtilis BSn5]
          Length = 227

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 29/238 (12%)

Query: 2   FVLIDDRALV---------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++I+D   V         K+G+ A F  DG+  EG+     E W       D+  ++  
Sbjct: 3   ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGL--EGYQRFTEENW-------DLIILDIM 53

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L       + + R IR  S VP+I ++   +    +  F+ G DD V KP     ++AR+
Sbjct: 54  LPS--MDGVTICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARI 111

Query: 113 AAIYRRLKVS------NNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            A+ RR K +       +  ET    +    R+  + GE    L  +E  +L YL+ N+ 
Sbjct: 112 KAVIRRYKATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNQR 171

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  ++ Q+   ++G +    +E  V+ HI +LRKKL ++     + +   +GY  D +
Sbjct: 172 QVFSREQLLEQVWG-YQFYGDERTVDVHIKRLRKKLASE-DKPFLYTVWGVGYKFDED 227


>gi|295394466|ref|ZP_06804689.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972645|gb|EFG48497.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D    L G +G  +              S   D+  ++  L   G    
Sbjct: 4   ILLVEDEESISDPLAYLLGKEGYDVTVAADGLQALAEFDSHGADLVLLDLMLP--GASGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA S+VP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCRQLRAKSKVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVMRRNTE 121

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S++      E G +R+  +     V+G    LP +E  +LE L+ N G+ + + Q+   I
Sbjct: 122 SSDIDDGVLEAGGVRIDVERHVASVRGSELALPLKEFELLEMLVRNAGRVMTRGQLIDRI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 WGQ-DYVGDTKTLDVHVKRLRAKIEETPSEPKLLVTVRGLGYKFE 225


>gi|298246255|ref|ZP_06970061.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297553736|gb|EFH87601.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 91/238 (38%), Gaps = 22/238 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +           G ++   N       L +  + D+  ++  L       +
Sbjct: 4   ILVIEDEANIAQLLRLYLEQAGYAVVTANDGIAGIELHAREKPDLVILDLMLPM--LDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  +  P++ ++     +  +   DSG DD + KP   RE+++RV AI RR   
Sbjct: 62  EVCRRIRTWANTPILMLTARQGEEDRIAGLDSGADDYLVKPFSPREVISRVKAILRRAGL 121

Query: 121 -----------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
                             S      GP+ +    R   V  +   L  +E  +L  +   
Sbjct: 122 YSSPGVEGEGHHADEKSASGEELSYGPLLINIPARRVTVGPQALSLTVKEFDLLALMAKA 181

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   +  + + ++G +    +   V+ HI  LRKKL + K     + +   +GY  
Sbjct: 182 PDRVFTRETLLNQVWG-YSYLGDGRTVDVHIGTLRKKLESTKQVQQVIQTVWGVGYKF 238


>gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
 gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
          Length = 234

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    +   EE L+   +  +  +   L+  G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSA--AATGEEGLELFTKGGIDLVLLDLMLPGIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|330505652|ref|YP_004382521.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328919938|gb|AEB60769.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 229

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     S +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S+     E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPSDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|218533059|ref|YP_002423875.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240141569|ref|YP_002966049.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254564081|ref|YP_003071176.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
 gi|218525362|gb|ACK85947.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240011546|gb|ACS42772.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254271359|emb|CAX27372.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
          Length = 234

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++     +  +        D+  ++  +   G   +
Sbjct: 6   ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVP--GLSGI 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IRA  +    P+I ++        +    +G DD V KP    E+LARV A+ RR
Sbjct: 64  ELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRR 123

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K +  ++    G I +         QG    L   E ++LEYLM + G+  ++ Q+   
Sbjct: 124 AKPTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDG 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS D
Sbjct: 184 VWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFD 227


>gi|184201520|ref|YP_001855727.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201]
 gi|183581750|dbj|BAG30221.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201]
          Length = 226

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L G +G  +               A  D+  ++  L   G+   
Sbjct: 4   ILMVEDEESLSDPLAYLLGREGFDVTVVADGIRAVAEFDRAGADLVLLDLMLP--GQSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCKQIRQRSNVPIIMLTAKDAEIDKVLGLELGADDYVTKPYSSRELVARIRAVLRRRAE 121

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    GP+R+  +     V GE   +P +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEELITSTVAAGPVRMDVERHVVHVDGEAVAMPLKEFELLEMLLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKVEPDPSAPQHIVTVRGLGYKFE 225


>gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
 gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 108/227 (47%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +     F ++G  +   +  +    + S    D+  ++  +  +G   +
Sbjct: 6   LLLVEDDPALAELLEYRFTNEGYGVRTTSDGDEALLMASEDVPDLVILDWMI--EGTSGI 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R   +   VP+I ++   +    +   D+G DD + KP   RE+LARVAA+ RR
Sbjct: 64  EVCRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARVAAVMRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++   +    + G I +         +GE   L   E R+L++ M + G+  ++ Q+   
Sbjct: 124 IRPALAGETIQAGDIVLDPVAHKVSRRGETLQLGPTEYRLLKFFMESPGRVFSRGQLLDG 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G     +E   V+ HI +LRK +      DP+ + R  GY+++ N
Sbjct: 184 VWGTG-SDIELRTVDVHIRRLRKAIDVPGADDPIRTVRSAGYALETN 229


>gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 234

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G   +   + + EE L+   +E+   +   L+   +  L
Sbjct: 4   ILVVDDEKPISDIITYTLKNEGY--DIVTAFDGEEALEQFEKENPDLVLLDLMLPKKTGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR  S VP+I ++   S    +   + G DD V KP  +RE+ ARV A  RR   
Sbjct: 62  EVCREIRKDSAVPIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASLRRNAL 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G + V  +      +G+   L  RE  +L YL  + G+ + +  +
Sbjct: 122 VTSDTSETESSDIVIGDLVVHQEAYIASKRGQEIELTHREFELLHYLAKHIGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  I +LR+K+ +       + ++R +GY +
Sbjct: 182 LETVWG-YDYFGDVRTVDVTIRRLREKIEDQPSHPSYIVTRRGVGYFL 228


>gi|326201972|ref|ZP_08191842.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987767|gb|EGD48593.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   + +        +G  +   +N L   +  +      +  ++  L   G    
Sbjct: 8   LIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQT-PSLVVLDIMLP--GIDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S +P+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRKVSSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRRYEH 124

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +        ++G +  LP +E  +L +L +N  K   + Q+   ++
Sbjct: 125 KEVDTLEVAFPNLIINKSNYTIRLKGNLIELPPKELELLFFLASNPNKVFTREQLLEHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   +   V+ H+ ++R+K+        + +   +GY  + 
Sbjct: 185 G-FDFYGDSRTVDVHVKRVREKIDLDGQPWQLKTVWGVGYKFEV 227


>gi|163939206|ref|YP_001644090.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861403|gb|ABY42462.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALRKLETDHYDFVVLDIMMPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE  PL  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 223


>gi|20808919|ref|NP_624090.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517580|gb|AAM25694.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 226

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G  +E     +            +  ++  L   G   +
Sbjct: 7   IYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALRKIQEKPPKLVILDIMLP--GIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R  S+VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  ALCKEVRKFSKVPIIMLTAKGDTLDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEG 124

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + V         +G+   L  +E  +L +L  +  +   + Q+   ++G
Sbjct: 125 ESEDKSVSYPDLYVSLSEYKVIYKGKNIDLTPKELELLYFLCTHPNRVFTRDQLLENVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   V+ HI +LR+K+     +    +   +GY  + N
Sbjct: 185 -YDYMGDSRTVDVHIKRLREKVGEGPNWKL-TTVWGVGYKFEVN 226


>gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
 gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
          Length = 236

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    +    + D+  ++  L  +    +
Sbjct: 5   ILVVDDEKPIADILQFNLKKEGYEVHCAYDGDEAVKMAEEIKPDLVLLDIMLPNR--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR + 
Sbjct: 63  EVCREIRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQH 122

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + N    G + +  D      +G+   L  RE  +L YL  + G+ + +  
Sbjct: 123 GAAQQAAEGAKNEIAVGSLVIHPDAYIVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931]
 gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931]
          Length = 228

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D    L G +G +    ++    + + +  RED   +   ++  G   +
Sbjct: 4   ILLVEDEEALYDPLSFLLGREGFTPVVVDN--GLDAVPAFEREDPDLVLLDVMLPGMSGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IRA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCKKIRASSSVPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVLRRQSP 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +        GP+R+  +     V GE   +P +E  +LE L+ N G+ + + Q+  
Sbjct: 122 DHGDEQDQKALAAGPVRMDVERHVVTVDGEEVSMPLKEFELLEILLRNTGRVMTRAQLIE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++G  D   +   ++ HI +LR K+  K      V + R LGY  +
Sbjct: 182 RVWGA-DYVGDTKTLDVHIKRLRSKIEPKASSPRYVITVRGLGYKFE 227


>gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 233

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + D     F  +G  +E   + +    L      D+  ++  +        
Sbjct: 5   ILVVDDESAISDIIKFNFEKEGYLVETACNGKEAIALAKENNYDLILLDIMMP--KLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E  R IR  S VP+I ++        +   + G DD V KP   RE+LARV A+ RR   
Sbjct: 63  EALREIRKTSDVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVLRRFDS 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K  ++  +   + +  +        EV  L  RE  +L++L +  G+  ++ ++   
Sbjct: 123 PDKKDDSSILKVMDLEIDLNKYQVLRGDEVIELTLREFELLKFLASYPGRVFSREELLEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           ++  ++   +   V+  + +LR+K+ + K GF  + +KR +GY
Sbjct: 183 VW-EYEYYGDIRTVDVTVRRLREKIEDEKKGFKYIKTKRGVGY 224


>gi|221134917|ref|ZP_03561220.1| putative DNA-binding response regulator PhoB [Glaciecola sp.
           HTCC2999]
          Length = 228

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +++    +    G ++      +           D+  ++  L   G   +
Sbjct: 5   ILLVEDEAPIREMIKIILEQAGFTVNEAEDFDIALDKMVEPYPDLVLLDWMLP--GGSGV 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R  + H    ++P+I ++        +   D+G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLARKFKEHEFTREIPVILLTARGEEDDKIRGLDAGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +          + +          G    +   E ++L + M++  +  ++ Q+   
Sbjct: 123 VTPTAKEEPIHFSGLVLDPISHRVTANGVSIEMGPTEFKLLHFFMSHAERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L ++     + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALESQGYDAMIQTVRGAGYRF 225


>gi|293603146|ref|ZP_06685580.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818540|gb|EFF77587.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 232

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      +  + L  +   D+  ++  L   G   L
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +R       VP+I ++   S Q  +D  ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  AMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  + G +++           +   +   E R+L + M +  +  +++Q+   
Sbjct: 123 RAPQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LRK L        V++ R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225


>gi|119896456|ref|YP_931669.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
           BH72]
 gi|119668869|emb|CAL92782.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
           BH72]
          Length = 236

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++   A     G  +      E  + L   A  D+  ++  L   G   +
Sbjct: 5   ILLVEDEPAIQELIAANLSRAGHHVVRAADAEAAQRLVRDALPDLVLLDWMLP--GMSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  R +RA     ++P+I ++     Q  +   ++G DD + KP   RE++AR+ A+ RR
Sbjct: 63  DFARRLRAEERTREIPIIMLTARGEEQDKVAGLETGADDYITKPFSPRELVARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + + +  E G +R+               L   E R+L +LM +  +  ++ Q+   
Sbjct: 123 RAPQATEDAVELGGLRLDPATHRVTAGERALSLGPTEFRLLHFLMTHAERVHSRAQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LR  L        + + R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRCALEPSAHDALIQTVRGSGYRF 225


>gi|75909575|ref|YP_323871.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703300|gb|ABA22976.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 250

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 101/232 (43%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSARE------DVSAIEAFLI 54
            ++++D  L+++       ++G   +   +     E+L+S          D+  ++  L 
Sbjct: 21  ILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFEPNGGDFPFDLVILDLMLP 80

Query: 55  GKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++R   + VP++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  Q--INGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR ++         +   + +        V+G+   L  +E R+LE  M+   +  +
Sbjct: 139 ALLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLLDQVWGP-DFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249


>gi|167036595|ref|YP_001664173.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039247|ref|YP_001662232.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256751653|ref|ZP_05492528.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913887|ref|ZP_07131204.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307725428|ref|YP_003905179.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320115022|ref|YP_004185181.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853487|gb|ABY91896.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|166855429|gb|ABY93837.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749462|gb|EEU62491.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890572|gb|EFK85717.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307582489|gb|ADN55888.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
 gi|319928113|gb|ADV78798.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 227

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G  +E     +            +  ++  L   G   +
Sbjct: 7   IYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIMLP--GIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S+VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + V         +G+   L  +E  +L +L  +  +   + Q+   ++
Sbjct: 125 ESEEKQAVSYPELYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D   +   V+ HI +LR+K+ +   +    +   +GY  + N
Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKMGDGPNWKL-TTVWGVGYKFEVN 227


>gi|312134119|ref|YP_004001457.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311774170|gb|ADQ03657.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 230

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 101/227 (44%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       S   D+  ++  L        
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENYDMVLLDVMLP--KIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I I+        +   + G DD + KP   RE++ARV A  RR  +
Sbjct: 64  SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARVRANLRRTAL 123

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S+       + G + +  +  + +  G+V  L  RE  +L++LM+ +G+  ++ ++   +
Sbjct: 124 SSVQDGKVLKAGALTLNPETFEVKKNGKVVELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +G ++   +   V+  + +LR+K+ +       + +KR +GY  + N
Sbjct: 184 WG-YEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229


>gi|229825123|ref|ZP_04451192.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
 gi|229790495|gb|EEP26609.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
          Length = 229

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG+ ++     E    +  S   D+  ++  L        
Sbjct: 5   ILVVDDEKLIVKGIRFGLEQDGMEVDAAYDGEEALEMVKSCAYDIILLDLMLP--KMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR   
Sbjct: 63  EVCQQIREFSDVPIIMLTAKGEDIDKIMGLEYGADDYMTKPFNILEVKARIKAILRRNEK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +K S  +   G + +  +GR   +      L  +E  +LE L+ +  K  ++ ++  
Sbjct: 123 NKVVKESTGKTLYGELGIDFEGRRVYINDNEINLTAKEFDLLELLVKDENKVYSREKLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            I+G  D   +   V+ HI +LR+K+         + +K  +GY  
Sbjct: 183 IIWG-SDYPGDVRTVDVHIRRLREKIEETPGEPRYIHTKWGVGYYF 227


>gi|291548407|emb|CBL21515.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 246

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  +      G   EGF +    +        ++  ++  L   GE  
Sbjct: 23  MIYCVEDERNIRELLVYTLETTGFEAEGFETGAELDTAMKKNMPELILLDIMLP--GEDG 80

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             + + +++ +    +P+I ++   +    +   + G DD + KP    E +ARV A+ R
Sbjct: 81  YNILKRLKSDTRTRDIPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLR 140

Query: 118 R--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   +          +RV     +   QGEV  L R+E  +LEYLM N+G  +++ QI  
Sbjct: 141 RCARQSEERELHCKGLRVNVSRHEVSYQGEVKELTRKEFELLEYLMENKGLVMSRNQILC 200

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D   E   V+ H+  LR+KL      + +++ R +GY I
Sbjct: 201 HVWG-YDFDGETRTVDVHVRTLRQKLGEAG--NLIETVRGVGYRI 242


>gi|113971044|ref|YP_734837.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114048269|ref|YP_738819.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|117921320|ref|YP_870512.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|120599604|ref|YP_964178.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|113885728|gb|ABI39780.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113889711|gb|ABI43762.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
 gi|117613652|gb|ABK49106.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
 gi|120559697|gb|ABM25624.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|319425699|gb|ADV53773.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 229

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    L      D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + ++      Q+P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      +   + +        V   V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SAPTRLEETIDVQGLLLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEESGHDRLIQTVRGAGYRF 225


>gi|18202894|sp|Q9F868|REGX3_MYCS2 RecName: Full=Sensory transduction protein regX3
 gi|9964001|gb|AAG09797.1|AF258346_2 response regulator RegX3 [Mycobacterium smegmatis str. MC2 155]
          Length = 228

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G   E     +    L    R     +   L+  G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGF--EATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   E GP+R+  +     V GE   LP +E  +LEYLM N G+ + + Q+   
Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEEDPA-NPVHLVTVRGLGYKLE 227


>gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 225

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 99/224 (44%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 5   LVVEDEESYSDALAYMLRKEGYEV--AIAANGNDALTEFDRNGADIVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I +S        +   + G DD V KP   RE++AR+ A+ RR +  
Sbjct: 63  VCRQIRQTSSVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGQEP 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++    E GP+R+  +     V G+   LP +E  +LE  + N G+ + + Q+   ++G
Sbjct: 123 DLAPPTLEAGPVRMDVERHVVTVDGQAQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             D   +   ++ H+ +LR K+  +      + + R LGY  D 
Sbjct: 183 -SDYVGDTKTLDVHVKRLRAKIEPDPGEPRYLVTVRGLGYKFDV 225


>gi|126173616|ref|YP_001049765.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|152999896|ref|YP_001365577.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160874521|ref|YP_001553837.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217974139|ref|YP_002358890.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS223]
 gi|304409488|ref|ZP_07391108.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307303846|ref|ZP_07583599.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125996821|gb|ABN60896.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151364514|gb|ABS07514.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160860043|gb|ABX48577.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217499274|gb|ACK47467.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS223]
 gi|304352006|gb|EFM16404.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306912744|gb|EFN43167.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315266760|gb|ADT93613.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS678]
          Length = 229

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    L      D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + ++      Q+P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      +   + +        V   V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SAPTRLEETIDVQGLMLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEESGHDRLIQTVRGAGYRF 225


>gi|291550513|emb|CBL26775.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 224

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I      G+   GF          +    ++  ++  L   GE  
Sbjct: 1   MIFCVEDDDNIRELVIYTLETTGLEARGFADGTAFMEALAFDTPELVLLDIMLP--GEDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ + ++       +P+I ++   S    +   DSG DD V KP    E+++R+ A+ R
Sbjct: 59  LEILKKLKNSSKTKDIPVIMVTAKGSEYDKVVGLDSGADDYVTKPFGMMELISRIKAVLR 118

Query: 118 RLKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R     +  +   G I + +   + +V GE   L  +E  +LE LM N+G  + + Q+ +
Sbjct: 119 RSGKQQDKTKLSVGGISLDTKKHEVKVDGEQVVLTLKEFELLEKLMRNQGIVLTRDQLLT 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ HI  LR+KL  +     V + R +GY I
Sbjct: 179 EIWG-YDFDGETRTVDVHIRTLRQKLGEQGS--LVKTVRGVGYRI 220


>gi|217968684|ref|YP_002353918.1| two component transcriptional regulator PhoB, winged helix family
           [Thauera sp. MZ1T]
 gi|217506011|gb|ACK53022.1| two component transcriptional regulator PhoB, winged helix family
           [Thauera sp. MZ1T]
          Length = 236

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++   A     G  +   N  E  + +   A  D+  ++  L   G   +
Sbjct: 5   ILLVEDEPAIQELIAANLARAGHHVVRANDAESAQRIVREALPDLVLLDWMLP--GASGV 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R +RA      +P+I ++     Q  +   + G DD V KP   RE++AR+ A+ RR
Sbjct: 63  EFARRLRADERTRDIPIIMLTARGEEQDKVTALEVGADDYVTKPFSPRELVARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + + +  E G +R+               L   E R+L +LM +  +  ++ Q+   
Sbjct: 123 RAPQTTEDVVELGGLRLDPATHRVSAGETALALGPTEFRLLHFLMTHPERVHSRAQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LR  L        + + R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRCALEPSAHDALIQTVRGSGYRF 225


>gi|315127525|ref|YP_004069528.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315016039|gb|ADT69377.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 229

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++  + +   +G         +           D+  ++  L   G   ++
Sbjct: 6   LVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLP--GGSGIQ 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +  + +    Q+P+I ++     +  +   + G DD V KP   +E++AR+ A+ RR+
Sbjct: 64  IAKKFKQNEHTRQIPIIMLTARGEEEDKIRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++     E   +R+          G    +   E R+L + M +  +  ++ Q+   +
Sbjct: 124 APTSLEEAIEVHGLRLDPISHRVTSGGSELDMGPTEFRLLHFFMTHPERVYSREQLLDHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  V+ HI +LRK +        V + R  GY  
Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAIATLGHDRLVQTVRGAGYRF 225


>gi|326791036|ref|YP_004308857.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541800|gb|ADZ83659.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G   +   +      +  S   D+  ++  L        
Sbjct: 4   ILIVDDDTNISELIALYLNKEGYETKEVATGRLALEVFESFYPDLVLLDVMLPE--LDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ + IR   + P+I ++    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 62  DVCKEIRKQHRTPIIMLTAKGEVFDKVLGLELGADDYMVKPFDPKELIARVKAVLRRNTQ 121

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   NR     + +  D      +G +  LP +E  +L +L ++  +   + Q+  
Sbjct: 122 PIEEVAPKNRIVLDNLIIDKDNYSVTYEGALVELPPKELEVLYFLASHPKQVFTREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G +D   +   V+ HI +LR K      +  + +   +GY  +
Sbjct: 182 KIWG-YDFVGDTRTVDVHIKRLRDKFEGDHTWS-IKTVWGVGYKFE 225


>gi|289579384|ref|YP_003478011.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289529097|gb|ADD03449.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 227

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G  +E     +            +  ++  L   G   +
Sbjct: 7   IYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQDNPPRLVILDIMLP--GIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S+VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRRYEP 124

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++         + V         +G+   L  +E  +L +L  +  +   + Q+   ++
Sbjct: 125 ESDERRAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D   +   V+ HI +LR+K+ +   +    +   +GY  + N
Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKIGDGTNWKL-TTVWGVGYKFEVN 227


>gi|154503273|ref|ZP_02040333.1| hypothetical protein RUMGNA_01097 [Ruminococcus gnavus ATCC 29149]
 gi|153796267|gb|EDN78687.1| hypothetical protein RUMGNA_01097 [Ruminococcus gnavus ATCC 29149]
          Length = 226

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I      G+  +GF   E   ++++ A +    I   ++  GE  
Sbjct: 1   MIYCVEDDDNIRELVIYTLETTGLKAKGF--AEGTAFMEALAFDTPELILLDIMLPGEDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LEL + ++       +P+I ++   +    +   DSG DD V KP    E+++R+ A+ R
Sbjct: 59  LELLKKLKNSAKTKDIPVIMVTAKGAEYDKVIGLDSGADDYVTKPFGMMELVSRIKAVLR 118

Query: 118 RLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R      +       + V     + +V GE+  L  +E  +LE LM N+   + + Q+  
Sbjct: 119 RSGRVQEQDMLSVNGVSVDVKKHEVKVAGEIVTLTLKEFELLERLMRNQNIVLTRDQLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ H+  LR+KL  K   D + + R +GY I
Sbjct: 179 DIWG-YDFDGETRTVDVHVRTLRQKLGEKG--DIIKTVRGVGYRI 220


>gi|291522756|emb|CBK81049.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ +      +    L      D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIKFSLEQDGMEVTAAYDGKEAYELAMQNDYDIILLDVMLPE--LNGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + ++IR  S VP+I ++        +   + G DD V KP +  EI AR+ AI RR K  
Sbjct: 64  VCQMIREKSDVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEIKARIKAIIRRTKGR 123

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +     +G +R+  D R   +      L  +E  +LE L+ N  K   +  + + 
Sbjct: 124 KQEQPAERTIVSGEMRIDLDSRRVFIGDREVNLTAKEFDLLELLITNPNKVFNRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           ++G +D   +   V+ H+ +LR+K+  +      + +K  +GY
Sbjct: 184 VWG-YDYPGDVRTVDVHVRRLREKIEASPSEPKYIHTKWGVGY 225


>gi|85711170|ref|ZP_01042230.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           baltica OS145]
 gi|85695083|gb|EAQ33021.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           baltica OS145]
          Length = 228

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G         +      +    D+  ++  L   G   +
Sbjct: 5   ILIVEDEAPIREMLSFVMEQHGYQAVEAKDYDSGLAKIAEPYPDMVLLDWMLP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + I++      +P+I ++     +  +   + G DD + KP   +E++AR+ A++RR
Sbjct: 63  QLAKKIKSDDFTRNIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARMRAVFRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  +   E   +++               +   E ++L + M +  +  ++ Q+   
Sbjct: 123 VAPTVLDEPLEIEGLKLDPVSHRISTHDRSIDMGPTEFKLLHFFMTHPERVYSREQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        + + R +GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALHEHGYDRLIQTVRGVGYRF 225


>gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 238

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    + + EE L +   ++   +   L+      L
Sbjct: 4   ILVVDDEKPISDIVKFSLSKEGFEV--ITAFDGEEGLAAFHEKNPDLVILDLMLPKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++   S    +   + G DD V KP  +RE++ARV A  RR ++
Sbjct: 62  EVCREIRKTSHVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQQL 121

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +          N    G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 APAETEEEKTANEIVLGALTIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY I
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYI 229


>gi|153814218|ref|ZP_01966886.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
 gi|317500010|ref|ZP_07958245.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087760|ref|ZP_08336686.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848614|gb|EDK25532.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
 gi|316898495|gb|EFV20531.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409741|gb|EGG89177.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 228

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       +G+ ++     E       +   D+  ++  L        
Sbjct: 5   ILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYAKACEYDLVLLDVMLP--KLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   
Sbjct: 63  QVCQQIREFSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G +++  + R   +      L  +E  +LE L  N  K  ++  + + 
Sbjct: 123 RKEPAGGPVLIKGSLKIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G +D   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 183 VWG-YDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYF 226


>gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 238

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 100/236 (42%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  ++          L    + ++  ++  L   G    
Sbjct: 5   ILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLAREFQPEIILLDVMLP--GMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R     P++ ++        +   + G DD + KP   RE+LARV A+ RR+++
Sbjct: 63  ELCRRLRQEMNTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAMLRRVRM 122

Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                          S  R  +G + +    R+  + G V  +  +E  +L +LM +RG+
Sbjct: 123 IREEMQKSEESTQKESEKRLLSGNLELNLARREVRLNGVVVAVKPKEFELLHFLMKHRGQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +++  +   ++G +D   +   V+ HI  LR+K+  +      + + R  GY  +
Sbjct: 183 VLSRDYLLKELWG-WDYFGDSRTVDVHIRWLREKIEPDPAHPVRIVTVRGAGYRFE 237


>gi|163854786|ref|YP_001629084.1| response regulator [Bordetella petrii DSM 12804]
 gi|163258514|emb|CAP40813.1| response regulator [Bordetella petrii]
          Length = 232

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      E    L  +   D+  ++  L   G   L
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAHTLIRAELPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +R       VP+I ++   + Q  ++  ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  TLARKLRDDERTRAVPVIMLTAKGAEQDKVEGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  + G +++           +   +   E R+L + M +  +  +++Q+   
Sbjct: 123 RAPQLTDDIIDVGGLKLDPVTHRLSGHEQALSIGPTEFRLLHFFMTHPERVFSRSQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LRK L        V++ R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225


>gi|254471949|ref|ZP_05085350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
 gi|211959151|gb|EEA94350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
          Length = 231

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 106/225 (47%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++     +  E L   ++ D+  ++  L   G   +
Sbjct: 4   ILIVEDEEPLSLLLRYNLEAEGYNVDVCARGDEAELLLQESQPDLLLLDWMLP--GLSGI 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA S+    P+I ++        +    +G DD V KP    E++ARV AI+RR
Sbjct: 62  ELCRRLRARSETERMPIIMLTARGEESERIRGLATGADDYVVKPFSIPELMARVRAIFRR 121

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +V +   ++G I +  +       G    L   E R+LE+LM+  G+  ++ Q+   
Sbjct: 122 ALPEVVSTMLKSGDIELDRETHRVRRTGREIHLGPTEFRLLEFLMSAPGRVYSREQLLDG 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V+E  V+ H+ +LRK +      DP+ + R  GY+ +
Sbjct: 182 VWG-HDVYVDERTVDVHVGRLRKAINKGRMKDPIRTVRGAGYAFN 225


>gi|163854114|ref|YP_001642157.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
 gi|163665719|gb|ABY33086.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
          Length = 239

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++     +  +        D+  ++  +   G   +
Sbjct: 11  ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVP--GLSGI 68

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IRA  +    P+I ++        +    +G DD V KP    E+LARV A+ RR
Sbjct: 69  ELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRR 128

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K +  ++    G I +         QG    L   E ++LEYLM + G+  ++ Q+   
Sbjct: 129 AKPTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDG 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS D
Sbjct: 189 VWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFD 232


>gi|266619520|ref|ZP_06112455.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288868930|gb|EFD01229.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 236

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E    +    + ++  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFETIIVNDGEEALRVFPEFKPNLVLLDLMLP--GMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R +RA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  SVCREMRAQSPVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                        +  E   + V          G    +P +E  +L +L ++  +   +
Sbjct: 125 PAVPAAAQTDQQGDYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            Q+   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHASWAL-TTVWGIGYKFEV 234


>gi|217958697|ref|YP_002337245.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229137906|ref|ZP_04266505.1| Response regulator [Bacillus cereus BDRD-ST26]
 gi|217067863|gb|ACJ82113.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228645563|gb|EEL01796.1| Response regulator [Bacillus cereus BDRD-ST26]
          Length = 234

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRKKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +     +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAQSSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|229095705|ref|ZP_04226685.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228687738|gb|EEL41636.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 234

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLTEQNNYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|146292399|ref|YP_001182823.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145564089|gb|ABP75024.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    L      D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + ++      Q+P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      +   + +        V   V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SAPTRLEETIDVQGLLLDPVSHRVSVGETVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEESGHDRLIQTVRGAGYRF 225


>gi|229171861|ref|ZP_04299431.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228611633|gb|EEK68885.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 234

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L +    D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTAQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQTTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHI 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   N +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQAVPHEQKANFSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|312126307|ref|YP_003991181.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776326|gb|ADQ05812.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 230

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 100/227 (44%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       S   D+  ++  L        
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLP--KIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I I+        +   + G DD + KP   RE++AR+ A  RR   
Sbjct: 64  SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S+ +     + G + +  +  + +  G+V  L  RE  +L++LM+ +G+  ++ ++   +
Sbjct: 124 SSTQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +  ++   +   V+  + +LR+K+ +       + +KR +GY  + N
Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229


>gi|146280822|ref|YP_001170975.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
 gi|145569027|gb|ABP78133.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
 gi|327479090|gb|AEA82400.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri DSM 4166]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++  +      G       + +    L    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     +  P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S    E G + +        + G+   +   E R+L++ M ++ +   ++Q+   
Sbjct: 124 ATPVDSEAPIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRSQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 235

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 102/229 (44%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        D   +    +L+ EE L+ + +E    I   ++      L
Sbjct: 4   ILVVDDETNILELIKYNLEKDNHRV--ITALDGEEGLRLAQQEPPDLIILDVMLPKVDGL 61

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R+H   S++P++ +S        +   + G DD + KP   RE+ ARV A  RR
Sbjct: 62  EVCRCLRSHPSTSRLPILMVSARRETVDHVVGLEMGADDYITKPFSPRELAARVKANLRR 121

Query: 119 LK------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +       + +    G + +  D  +  V+G       +E ++L  LM++ GK   +  
Sbjct: 122 AQYDKLVASNTSLIRVGGLEMNLDKFEVHVEGTPVNFTPKEFKLLHVLMSHPGKVFTREM 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G FD  V+   V+ HI  +R+K+  +      + + R +GY  
Sbjct: 182 LLEQVWG-FDNNVDTRTVDVHIRYVRQKIEVDPGNPKYILTVRGVGYKF 229


>gi|222528131|ref|YP_002572013.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312621184|ref|YP_004022797.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222454978|gb|ACM59240.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312201651|gb|ADQ44978.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 230

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 103/227 (45%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    S + E+ L     E+   +   ++       
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTA--SYDGEDALNRIKNENFDMVLLDVMLPKLDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I I+        +   + G DD + KP   RE++AR+ A  RR   
Sbjct: 64  SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  +     + G + +  +  + +  G+V  L  RE  +L++LM+ +G+  ++ ++   +
Sbjct: 124 SAAQDGKVLKAGNLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +  ++   +   V+  + +LR+K+ +     + + +KR +GY  + N
Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229


>gi|84498453|ref|ZP_00997223.1| response regulator receiver [Janibacter sp. HTCC2649]
 gi|84381196|gb|EAP97080.1| response regulator receiver [Janibacter sp. HTCC2649]
          Length = 226

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L   +G  +    +         S   D+  ++  L   G   +
Sbjct: 4   ILVVEDEVSFSDPLSYLLRKEGYEVSVAENGNDALTEFDSGGADLVLLDLMLP--GLSGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RRL  
Sbjct: 62  DVCRALRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIKAVLRRLSE 121

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEELLPTTLEAGPVRMDVERHVVTVGGAATQLPLKEFELLEMLLRNTGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRAKVEPDPAAPKHIVTVRGLGYKFE 225


>gi|83952004|ref|ZP_00960736.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius nubinhibens ISM]
 gi|83837010|gb|EAP76307.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius nubinhibens ISM]
          Length = 221

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D    +D        DG  +    + E    L      D+  ++  L       +E+
Sbjct: 2   LVEDEPAQRDILTYNLEADGFEVAAAENGEEALLLVDEVSPDIIVLDWMLPNV--SGIEV 59

Query: 64  PRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R +++ S    VP+I +S        +   ++G DD V KP    E++ARV A  RR +
Sbjct: 60  CRQLKSRSDTRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVAELMARVRAQLRRTR 119

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R E   I + ++        +   L   E R+L   M   G+  ++ Q+   ++
Sbjct: 120 PAAMGARLEFDDIVLDAETHRVTRADQSLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 180 GR-DIYVDTRTVDVHIGRLRKALCQYGGDDPLRTVRGAGYAL 220


>gi|228957490|ref|ZP_04119243.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229108678|ref|ZP_04238289.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126530|ref|ZP_04255544.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229143826|ref|ZP_04272245.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228639587|gb|EEK95998.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228656919|gb|EEL12743.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228674819|gb|EEL30052.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228802180|gb|EEM49044.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 236

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLP--GQSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 66  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 126 KQTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233


>gi|229160173|ref|ZP_04288173.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623307|gb|EEK80133.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 234

 Score =  251 bits (642), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTGQHNYDLILLDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARIKAQLRRHM 123

Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +    G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQTVSHESNVHSISFGRFEINQHSAELTVDGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|149914856|ref|ZP_01903385.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
 gi|149811044|gb|EDM70881.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
          Length = 229

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D    ++        DG  +    + E    L   A  D+  ++  L       +E
Sbjct: 9   LLVEDEPAQREVLSYNLEADGFRVTTAENGEEALLLVDEAAPDIIVLDWMLPNV--SGIE 66

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++  +    VP++ +S        +   ++G DD V KP    E++ARV A+ RR 
Sbjct: 67  VCRQLKTRADTRNVPILMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRALLRRS 126

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S    R E   I + ++        +   L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPSAVGERLEYEDIVLDAETHRVTRSDKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALCQHGGGDPLRTVRGAGYAL 228


>gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 228

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L G +G      ++    + L    RE    +   ++  G   +
Sbjct: 5   ILIVEDEEALSDPLAFLLGREGFQTIVVDN--GLDALPVFDREGADLVLLDVMLPGMSGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 63  EVCRKLREVSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + +  + GP+R+  D     V GE   +P +E  +LE L+ N G+ + + Q+   
Sbjct: 123 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ HI +LR K+  +      V + R LGY  +
Sbjct: 183 VWGA-DYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGYKFE 227


>gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 234

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    S   EE L+   +  +  +   L+  G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSAAAS--GEEGLELFTKGGIDLVLLDLMLPGIDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         +     G I +        V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 AVEASGVVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+         + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPRYLTTVRGLGYKID 230


>gi|89896867|ref|YP_520354.1| hypothetical protein DSY4121 [Desulfitobacterium hafniense Y51]
 gi|89336315|dbj|BAE85910.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 238

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++++        +G ++           L    + D+  ++  L       L
Sbjct: 8   ILLVEDDVIIQELVNYNLQREGYTVIIAEEGNSALQLLDKEKPDLVLLDVMLPE--LDGL 65

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR     + +P+I +S    +   +   + G DD V KP   RE+LAR+ A  R 
Sbjct: 66  EVCKKIRGNQETASLPIIMLSARDEVADRVIGLELGADDYVTKPFSPRELLARIKARLRE 125

Query: 119 LKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            K ++    T    G + ++ +     V+GE   L  +E  +L   M    +  ++  + 
Sbjct: 126 EKRNSTPLPTSLTWGDLEIWPESYMVTVKGEYVTLTGKEFDLLHIFMKRPNQVFSREYLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++G +  + +   V+ HIS LR KL++      ++S R +GY +  N
Sbjct: 186 QKVWG-YTISGDTRTVDVHISNLRSKLKSI--SPIIESVRGVGYRLAVN 231


>gi|54027160|ref|YP_121402.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018668|dbj|BAD60038.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 229

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G  +               +  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEVTVVGDGPSALAEFDRSGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRTRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAGD 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   E GP+R+  D     V G+   LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 ELDGNGESGVLEAGPVRMDVDRHTVMVNGKPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +    + + + R LGY ++
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEADPAKPEHLVTVRGLGYKLE 228


>gi|26991996|ref|NP_747421.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24987128|gb|AAN70885.1|AE016732_10 DNA-binding response regulator PhoB [Pseudomonas putida KT2440]
          Length = 242

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 19  ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLP--GTSGI 76

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 77  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 136

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S++    E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 137 TGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 196

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 197 VWGG-NVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 238


>gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 227

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L G +G      ++    + L    RE    +   ++  G   +
Sbjct: 4   ILIVEDEEALSDPLAFLLGREGFQTIVVDN--GLDALPVFDREGADLVLLDVMLPGMSGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRKLREVSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + +  + GP+R+  D     V GE   +P +E  +LE L+ N G+ + + Q+   
Sbjct: 122 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ HI +LR K+  +      V + R LGY  +
Sbjct: 182 VWGA-DYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGYKFE 226


>gi|238917773|ref|YP_002931290.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238873133|gb|ACR72843.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 233

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 97/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     E      S  + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECYETKIVYDGESALSELSVFKPNLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR ++ VP+I +S        +   + G DD + KP   +E++ARV A+ RR  +
Sbjct: 65  QVCREIRKNNNVPIIMLSAKGETFDKVLGLELGADDYIIKPFETKEMVARVKAVLRRYHM 124

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +               + +  D       G+   +P +E  +L +L +   +   + Q
Sbjct: 125 PQSIGVDSSNAKCVNYPDLSINLDNYSVNYMGKNVEMPPKELELLYFLASAPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   I+G ++   +   V+ HI ++R+K+++ + ++ +++   +GY  
Sbjct: 185 LLDNIWG-YEYIGDTRTVDVHIKRIREKIKDHVHWN-IETVWGIGYKF 230


>gi|119774211|ref|YP_926951.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766711|gb|ABL99281.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 229

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +           D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVMEQHGFTTSVAEDFDSALGQLQEPYPDLILLDWMFP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + ++      Q+P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKRLKQDEFTRQIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      +   + +            V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 AAPTRLEETIDVQGLTLDPVSHRVTAGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEPSGHDRLIQTVRGAGYRF 225


>gi|146297552|ref|YP_001181323.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411128|gb|ABP68132.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 230

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 103/227 (45%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    S + E+ L     E+   +   ++       
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKIT--TSYDGEDALNKIKNENFDMVLLDVMLPKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S+VP+I I+        +   + G DD + KP   RE++AR+ A  RR   
Sbjct: 64  TVCKKVREFSEVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTSQ 123

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N      + G + +  +  + +  G+V  L  RE  +L++LM+ +G+  ++ ++   +
Sbjct: 124 QSNSDGKVLKAGKLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +  ++   +   V+  + +LR+K+ +       + +KR +GY  + N
Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPVFILTKRGIGYYFNPN 229


>gi|292492323|ref|YP_003527762.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus halophilus Nc4]
 gi|291580918|gb|ADE15375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus halophilus Nc4]
          Length = 229

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    +   +G + +     E      + +  D+  ++  L   G   +
Sbjct: 5   ILVVDDETAIREMLGFVLTQEGYNYQAAADAEQAWQRLNESHPDLILLDWMLP--GISGV 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++        PLI ++     +  +   + G DD + KP    E++ARV A+ RR
Sbjct: 63  DLARRLKREPNTRSLPLIMLTARDDEEDKVRGLNVGADDYITKPFSPTELIARVKAVLRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S    E   +++        + G    +   E R+L + + +  +  ++ Q+   
Sbjct: 123 SAPLLSREVVEVDGLKLDPSSHRLSIGGLPLEMGPTEFRLLHFFITHPERVYSRGQLIDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L        + + R +GY  
Sbjct: 183 VWG-DNVYVEERTVDVHIRRLRKSLEPSGHDRLIQTVRGVGYRF 225


>gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 231

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +      L++  R     +   L+  G    E
Sbjct: 5   LVVEDEESYSDALSYMLRKEGFEVAVAPTGTVA--LETFDRTGADLVLLDLMLPGLSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRTLRQKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRGED 122

Query: 123 N----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E GP+R+  +     V+G+   LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EVVLPAALEAGPVRMDVERHVVTVRGDNVQLPLKEFELLEVLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+    G    + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEEDPGSPRYIVTVRGLGYKFE 225


>gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation
           [Oceanobacillus iheyensis HTE831]
          Length = 231

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 105/226 (46%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         + G   +   + +       ++  D+  ++  L       +
Sbjct: 5   ILIVDDEKSIVTLLKYNMENSGFETDVAYNGQEAINKAEASMYDLIVLDLMLPEV--DGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      P++ ++        +   + G DD + KP   +E++ARV AI RR +
Sbjct: 63  EVCRTLRMNQVNTPILMLTAKDEEFDKVLGLEMGADDYLTKPFSPKEVIARVKAILRRSQ 122

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +SNN      + G + ++ +  + E+   +    R+E  +L +L  ++GK +++ Q+ S+
Sbjct: 123 LSNNHGFHVLKIGELSIYPERYEAEMSNNIITFTRKEFELLYHLAKHKGKVISRDQLLSS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++  +D   +  +V+ HIS LR K+  N      + + R LGY ++
Sbjct: 183 VWD-YDFIGDTRIVDVHISHLRDKIEPNSKKPVYIKTVRGLGYKME 227


>gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905]
 gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905]
          Length = 238

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G  +E   + + +E L+ +     + I   L+      +
Sbjct: 5   ILVIEDEFSIATLLKYNLEQAGYLVE--TAADGQEGLEKAIEIQPNLILLDLMLPKLDGM 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + IR      P+I ++        +   + G DD + KP   RE+LARV A+ RR  
Sbjct: 63  EVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFT 122

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +      E G +RVF +  +  +Q E      +E  +L YL+ N+ + + +
Sbjct: 123 QNVVSDEKDEPQEKMFEFGQLRVFPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY  +
Sbjct: 183 DQLLSAVW-KYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFE 233


>gi|75674709|ref|YP_317130.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter winogradskyi Nb-255]
 gi|74419579|gb|ABA03778.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 234

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLEAEGYEVETVVRGDEADTRLKERVPDLVVLDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA S     P+I ++        +    +G DD V KP    E+LARV ++ RR
Sbjct: 63  ELCRRLRARSDTRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +    G I +  D       G    L   E R+LE+ + + G+  ++ Q+  +
Sbjct: 123 ASPARLASVLSFGDIELDRDRHRVVRSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DVYIDERTVDVHIGRLRKLLNPDGELDPIRTVRGAGYALD 226


>gi|229138085|ref|ZP_04266683.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228645430|gb|EEL01664.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 218

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++  +       L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPE--MDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  EV GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|42780487|ref|NP_977734.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|206977570|ref|ZP_03238464.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217958874|ref|YP_002337422.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095033|ref|YP_002529093.1| response regulator [Bacillus cereus Q1]
 gi|42736406|gb|AAS40342.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|206744288|gb|EDZ55701.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068126|gb|ACJ82376.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239091|gb|ACM11801.1| response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++  +       L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPE--MDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  EV GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 223


>gi|125974109|ref|YP_001038019.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714334|gb|ABN52826.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 224

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I     +G    GF+  E       +   D+  ++  L   GE  
Sbjct: 1   MIYCVEDDRSIRELIIYALKSNGYEAVGFDKAEPFYKELENKLPDLVLLDIMLP--GEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ + ++A      +P+I ++   +    +   DSG DD + KP    E L+RV A+ R
Sbjct: 59  IEILKKLKASPKLRNIPVIMLTAKSAEYDKVLGLDSGADDYITKPFGIMEFLSRVKAVLR 118

Query: 118 RLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R    +N +E   G + ++ D       G+   L  +E  +L+YLM N G  + + ++  
Sbjct: 119 RSGNVSNSSEISVGQLTMYIDKHVVIADGKEVALTFKEFELLKYLMENAGIVLTRDKLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G ++   E   ++ HI  LR+KL        +++ R +GY I
Sbjct: 179 EVWG-YEYEGETRTLDVHIRTLRQKLGEAGA--IIETVRGVGYKI 220


>gi|227358160|ref|ZP_03842501.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis ATCC 29906]
 gi|227161496|gb|EEI46533.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis ATCC 29906]
          Length = 229

 Score =  250 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G         +           D+  ++  +   G   +
Sbjct: 5   ILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + ++       +P+I ++     +  +   ++G DD V KP   +E++ARV AI RR
Sbjct: 63  QVIKQMKREINTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           L    + +  E   + +         Q +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 LSPMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEQDGHDRMIQTVRGTGYRF 225


>gi|33591409|ref|NP_879053.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis Tohama I]
 gi|33603443|ref|NP_891003.1| phosphate regulon transcriptional regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|33571051|emb|CAE40539.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis Tohama I]
 gi|33577567|emb|CAE34832.1| phosphate regulon transcriptional regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|332380810|gb|AEE65657.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis CS]
          Length = 232

 Score =  250 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      E  + L  +   D+  ++  L   G   L
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLP--GASGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +R       VP+I ++   + Q  +D  ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  SLARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  +   +++           +   +   E R+L + M +  +  +++Q+   
Sbjct: 123 RAPQLTDDIIDVAGLKLDPVTHRLSGHSQSLSIGPTEFRLLHFFMTHPERVFSRSQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LRK L        V++ R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225


>gi|332799517|ref|YP_004461016.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697252|gb|AEE91709.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 230

 Score =  250 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     +    + SS   D+  ++  L        
Sbjct: 7   ILVVDDEKRIVDLVRLYLEREGFIVDEAFEGQQALDMISSVSYDLIILDLMLPV--IDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +  F+ G DD V KP   RE+ ARV A+ RR+  
Sbjct: 65  TVCKKIREKYDTPVIMLTARGEEFDKVLGFELGADDYVVKPFSPRELTARVKALLRRMAS 124

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + +    R  +V G+   L  +E  +L +L  N+GK   + ++   +
Sbjct: 125 KQDYEAEALIFPELLIDPAARVVKVDGKEVALTPKEFDLLYFLAKNKGKAFNREKLLKEV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D       V++HI +LR+KL        +++   +GY  + 
Sbjct: 185 WG-YDFYGSLRTVDTHIKQLREKLGRSKAASYINTVWGIGYKFEV 228


>gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
 gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
          Length = 236

 Score =  250 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +  F + +  E ++   +E+   I   ++   +  +
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGFEV--FCAYDGNEAVEQVKKEEPDLILLDIMLPHKDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR K 
Sbjct: 63  EVCREVRKSYDIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRRKS 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +      G + ++ D    + +GE   L  RE  ++ YL  + G+ + +  +  
Sbjct: 123 GAEEVSTQKELTVGDLTIYPDAYQVKRRGETIELTHREFELIHYLAKHLGQVMTREHLLQ 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           A++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 AVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPNWIITRRGVGYYL 227


>gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 223

 Score =  250 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++  +       L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPE--MDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  EV GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 223


>gi|167767696|ref|ZP_02439749.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1]
 gi|317499122|ref|ZP_07957400.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710713|gb|EDS21292.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1]
 gi|316893591|gb|EFV15795.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 226

 Score =  250 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 106/229 (46%), Gaps = 11/229 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M  +++D   +++         G    GF +  EF + L    + ++  ++  L   GE 
Sbjct: 1   MIFVVEDDPNIRELVTYTLQSTGFDACGFENGSEFLKALSDGEKPELVLLDIMLP--GED 58

Query: 60  VLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            + +   +R  S    +P+I ++   +    +   DSG DD + KP    E+++RV A+ 
Sbjct: 59  GISILGKLRKKSATRDLPIIMMTAKGTEYDKVLGLDSGADDYITKPFGMMELVSRVKAVL 118

Query: 117 RRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR   +  + E   G ++++ +    +  G    L  +E ++L  L+ ++G  + + Q+ 
Sbjct: 119 RRSSRNEKKDEIIVGQLKIYPNKHKVKSCGNEVTLTNKEFKLLCLLVESKGNVLNRDQLL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + I+G +D   E   V+ HI  LR+KL        +++ R +GY I  N
Sbjct: 179 TNIWG-YDFDGETRTVDVHIRSLRQKLGECG--KLIETVRGIGYRIGGN 224


>gi|222094843|ref|YP_002528903.1| response regulator [Bacillus cereus Q1]
 gi|221238901|gb|ACM11611.1| response regulator [Bacillus cereus Q1]
          Length = 234

 Score =  250 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRKKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +     +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAQSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|74316234|ref|YP_313974.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055729|gb|AAZ96169.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 230

 Score =  250 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++         G  +      E       +   DV  ++  L   G   +
Sbjct: 5   ILLVEDEPGIQELLKFNLTQAGHQVTAAGDAEHALKFLKTTLPDVILLDWMLP--GMSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R +R  ++   VP+I ++     +  +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 63  DLCRRLRGDARYQPVPIIMLTARGEERDKVLGLDTGADDYITKPFSPRELVSRIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++    E   +R+       + +G    L   E R+L + M +  +   + Q+   
Sbjct: 123 RAPQMTEEAVEVAGLRLDPVSHRVQGKGIALELGPTEFRLLHFFMTHPERVYTRPQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  VEE  V+ HI +LR  L        V + R  GY  
Sbjct: 183 VWG-DDVFVEERTVDVHIRRLRLALEPSGHAALVQTVRGSGYRF 225


>gi|30019274|ref|NP_830905.1| two-component response regulator yvrH [Bacillus cereus ATCC 14579]
 gi|229078408|ref|ZP_04210970.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|296501821|ref|YP_003663521.1| two-component response regulator yvrH [Bacillus thuringiensis
           BMB171]
 gi|29894817|gb|AAP08106.1| Two-component response regulator yvrH [Bacillus cereus ATCC 14579]
 gi|228704901|gb|EEL57325.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|296322873|gb|ADH05801.1| two-component response regulator yvrH [Bacillus thuringiensis
           BMB171]
          Length = 234

 Score =  250 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|118470709|ref|YP_885340.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171996|gb|ABK72892.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
           MC2 155]
          Length = 225

 Score =  250 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G   E     +    L    R     +   L+  G    +
Sbjct: 2   LIVEDEESLADPLAFLLRKEGF--EATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTD 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 119

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   E GP+R+  +     V GE   LP +E  +LEYLM N G+ + + Q+   
Sbjct: 120 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+      +PV   + R LGY ++
Sbjct: 180 VWGA-DYVGDTKTLDVHVKRLRSKIEEDPA-NPVHLVTVRGLGYKLE 224


>gi|229010688|ref|ZP_04167886.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229057028|ref|ZP_04196422.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229132193|ref|ZP_04261050.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229166232|ref|ZP_04293991.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617177|gb|EEK74243.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651241|gb|EEL07219.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228720305|gb|EEL71881.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228750582|gb|EEM00410.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 218

 Score =  250 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALRKLETDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE  PL  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|87200295|ref|YP_497552.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135976|gb|ABD26718.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 229

 Score =  250 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 103/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +     F  +G  +   +  +    L +    D+  ++  +   G   +
Sbjct: 6   LLLVEDDTALAELVEYRFRGEGYDVRTTDDGDEALLLAAEDTPDLVLLDWMI--GGTSGI 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R + +   VP+I ++        +   + G DD V KP   RE++ARV A+ RR
Sbjct: 64  EVCRRLRRNKETAHVPIIMLTARSDEDDRIRGLEIGADDYVTKPFSPRELIARVGAVLRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++   +      G + +         +G+   +   E R+L++ M + G+  ++ Q+  A
Sbjct: 124 VRPALAGETITVGDLSLDPTAHRVSRRGQPMKVGPTEFRLLKHFMEHPGRVFSRGQLLDA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G     +E   V+ HI +LR+ +      DPV + R  GY+++
Sbjct: 184 VWGSG-SDIELRTVDVHIRRLRQAIAVPGAADPVRTVRSAGYALE 227


>gi|325263675|ref|ZP_08130409.1| phosphate regulon response regulator PhoB [Clostridium sp. D5]
 gi|324031384|gb|EGB92665.1| phosphate regulon response regulator PhoB [Clostridium sp. D5]
          Length = 226

 Score =  250 bits (641), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 107/225 (47%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I      G+  +GF   E   ++++ A +    I   ++  GE  
Sbjct: 1   MIYCVEDDDNIRELVIYTLETTGLKAQGF--AEGGSFMEALAFDTPELILLDIMLPGEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L L   +++ S    +P+I ++   +    +   DSG DD V KP    E+++RV A+ R
Sbjct: 59  LSLLGKLKSSSKTKDIPVIMVTAKGAEYDKVVGLDSGADDYVTKPFGMMELVSRVKAVLR 118

Query: 118 RLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   ++++     G + V     +  V G+   L  +E  +LE LM N+   + + Q+  
Sbjct: 119 RTGRASDKDDMSVGGVCVNVKKHEVTVDGKTVTLTLKEFELLERLMRNQNIVLTRDQLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ H+  LR+KL  K   + +++ R +GY I
Sbjct: 179 DIWG-YDFDGETRTVDVHVRTLRQKLGVKG--EIIETVRGVGYRI 220


>gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 229

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G +     + + ++ L+   R     +   L+  G    +
Sbjct: 5   LIVEDEESFADPLAFLLRKEGFT--AAIATDGQQALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR    
Sbjct: 63  VCRELRQRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGDS 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +        GP+R+  +     V G   PLP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 SGDSQQEQTVLIGGPVRMDVERHVVTVNGTEVPLPLKEFDLLEYLLRNVGRVLTRNQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  + G    + + R LGY  +
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEPEPGSPRYLVTVRGLGYKFE 228


>gi|229068774|ref|ZP_04202071.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229177635|ref|ZP_04305012.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228605825|gb|EEK63269.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228714391|gb|EEL66269.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 236

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLP--GQSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 66  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 126 KQTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233


>gi|154250855|ref|YP_001411679.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154154805|gb|ABS62022.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 272

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G  +      E  + L      D+  ++  L   G   +EL
Sbjct: 48  IVEDEEALLTLLQYNLDKEGYKVITAADGEEADLLIRETTPDLILLDWMLP--GLSGIEL 105

Query: 64  PRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R +R       VP+I I+        +   D G DD V KP    E+LAR+ A+ RR++
Sbjct: 106 CRRLRGRPETRNVPIIMITARGEETDRIRGLDIGADDYVTKPFSMTELLARIRAVMRRIR 165

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +    G I +               L   E R+L++L+ + G+  ++ Q+   ++
Sbjct: 166 PALTEDLVTFGDIVIDRAAHRVRRGDREVHLGPTEYRLLDHLIQHPGRVFSREQLLDTVW 225

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  VE   V+ H+ +LRK L +K   DP+ + R  GYS+D
Sbjct: 226 G-SDVYVEARTVDVHVGRLRKALNDKGEKDPIRTVRSAGYSLD 267


>gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 229

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 104/224 (46%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        ++G  +E   +++ EE L+    E    I   ++      + 
Sbjct: 7   LVVDDEEKIRQVIGIYLTNEGYRVE--EAVDGEEALRKFRAESWDLIILDVMMPKMDGIA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S+VP+I ++        +   + G DD + KP   RE++AR+ A+ RR    
Sbjct: 65  VCQEIRRVSKVPIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRRAGTE 124

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + + E       +R+    R+ +V+ +   L  +E  +L  L    G+  ++ Q+   ++
Sbjct: 125 SKKEEHILKFPGMRIDLISREIQVKEKPVTLTPKEFELLALLAKTAGRSYSREQLLEEVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   +   V++H+++LR KLR     + + +   +GY  + 
Sbjct: 185 G-FDYYGDVRTVDTHVNRLRDKLRAAGAPNFIKTVWGVGYKFEV 227


>gi|17231995|ref|NP_488543.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133639|dbj|BAB76202.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 253

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 101/232 (43%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSARE------DVSAIEAFLI 54
            ++++D  L+++       ++G   +   +     E+L+S          D+  ++  L 
Sbjct: 24  ILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFDPNGGDFPFDLVILDLMLP 83

Query: 55  GKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++R   + VP++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 84  Q--INGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 141

Query: 114 AIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR ++         +   + +        V+G+   L  +E R+LE  M+   +  +
Sbjct: 142 ALLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWS 201

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 202 REQLLDQVWGP-DFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 252


>gi|229195420|ref|ZP_04322188.1| Response regulator [Bacillus cereus m1293]
 gi|228587960|gb|EEK46010.1| Response regulator [Bacillus cereus m1293]
          Length = 234

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +     +  G  ++     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAQSSSFGRFKIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|114765354|ref|ZP_01444471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pelagibaca bermudensis HTCC2601]
 gi|114542334|gb|EAU45363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. HTCC2601]
          Length = 229

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A  ++        +G  +    + E    +      DV  ++  L       +E
Sbjct: 9   LVVEDEASQREVLRYNLEAEGFRVAAAGNGEEALVMLDEEEPDVIVLDWMLPN--LSGIE 66

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R I+   +   VP+I +S        +   ++G DD V KP   RE++ARV A  RR 
Sbjct: 67  VCRQIKTRPETRGVPVIMLSARSEEIDRVRGLETGADDYVVKPYSLRELMARVKAQLRRA 126

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    R E   I + ++       G+   L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPAAAGLRLEYDDIILDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALGIYGGGDPLRTVRGAGYAL 228


>gi|291550846|emb|CBL27108.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       +G+ ++     E           D+  ++  L        
Sbjct: 5   ILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYARRCEYDLVLLDVMLP--KLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   
Sbjct: 63  QVCQQIREFSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G +++  +GR   +      L  +E  +LE L  N  K  ++  + +
Sbjct: 123 RKEEPAGSPVLVKGNMKIDCEGRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G +D   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 183 LIWG-YDYPGDARTVDVHIRRLREKIEQNPSEPKYVHTKWGVGYYF 227


>gi|47567578|ref|ZP_00238289.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47555773|gb|EAL14113.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 234

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHASSFGRFEIDQHSAELTVNGRIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 101/223 (45%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++   + +  E ++     D   +   ++      +E
Sbjct: 5   LVVDDEKLIVKGLKFSLEQDDMEVD--TAYDGGEAIEKIKANDYDIVLLDIMIPVYTGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + +++R  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSNRK 122

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +N  E   ++V  D R   V G+   L  +E  +LE LMA+  K  ++ ++ + 
Sbjct: 123 QAPAKPSNVMEINGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELLNT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           I+G      +   V+ H+ +LR+K+  N      + +K  +GY
Sbjct: 183 IWGDS-YPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGY 224


>gi|52144209|ref|YP_082619.1| response regulator [Bacillus cereus E33L]
 gi|196036495|ref|ZP_03103891.1| DNA-binding response regulator [Bacillus cereus W]
 gi|228944829|ref|ZP_04107192.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|51977678|gb|AAU19228.1| response regulator [Bacillus cereus E33L]
 gi|195990969|gb|EDX54941.1| DNA-binding response regulator [Bacillus cereus W]
 gi|228814857|gb|EEM61115.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 234

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGCVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 229

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 4/224 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   +                 +  S     ++       
Sbjct: 8   ILVADDEPKMRELIALYLKRENFEVTAVEDGMKALAELEEKGDVFSLFMIDVMMPNMDGF 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR+ S  P+I I+        L  F+ G DD + KP   RE+ ARV A+ +R   
Sbjct: 68  ALCREIRSFSDKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVLKRANP 127

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   TG I++  +GR+  V GE   L  +E  +L +L+ N+GK +++  I   ++ 
Sbjct: 128 VQGEELIHTGQIKINVEGREVSVGGEQINLTPKEFDLLVFLINNKGKVLSREHITRKVWD 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   ++  V++HI KLR+KL  K G + + +   +GY  + N
Sbjct: 188 -YDYFGDQRTVDTHIKKLREKLGEKAGNE-IKTIWGVGYKFEVN 229


>gi|300933784|ref|ZP_07149040.1| two-component system response regulator TcsR8 [Corynebacterium
           resistens DSM 45100]
          Length = 230

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +    L   +G  +    + +    L + A +D+  +   L+  G    E
Sbjct: 5   LIVEDEESLAEPLAFLLKKEGFEVH--LAADGPTALDTFAAQDIDIVLLDLMLPGMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +
Sbjct: 63  VCRQLRQTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGET 122

Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  E    ++          +     V GE  P+P +E  +LEYLM N G+ + + Q+ 
Sbjct: 123 EHVEEADEGQILREDRVMMDVERHIVTVDGEPVPMPLKEFDLLEYLMRNSGRVLTRGQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             ++G+ D   +   ++ HI +LR K+         + + R LGY  +
Sbjct: 183 DRVWGV-DYVGDTKTLDVHIKRLRSKIERHPSRPQLLLTVRGLGYKFE 229


>gi|229114656|ref|ZP_04244070.1| Response regulator [Bacillus cereus Rock1-3]
 gi|228668721|gb|EEL24149.1| Response regulator [Bacillus cereus Rock1-3]
          Length = 234

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLIEQNNYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|229154782|ref|ZP_04282897.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228628730|gb|EEK85442.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 234

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHASSFGRFEIDQHSAELTVNGRIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 227

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L   +G  +    +             D+  ++  L   G   +
Sbjct: 4   ILIVEDEVSFSDPLSYLLRKEGYDVAVAETGPDGLAEFDKNGADLVLLDLMLP--GLSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP+I ++   S    +   + G DD V KP   RE+LARV A+ RRL  
Sbjct: 62  DVCRALRQRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVKAVLRRLAE 121

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEDLLPPTIEAGPVRMDVERHTVTVNGAPTSLPLKEFELLEMLLRNSGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRAKVEPDPARPVHIVTVRGLGYKFE 225


>gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 236

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++             +  + D+  ++  L  K    +
Sbjct: 6   ILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQVNQEKPDLILLDIMLPNK--DGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   ++P+I ++   S    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  EVCREVRKQFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQT 123

Query: 122 SNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S +          G + +  +    + +GE   L  RE  ++ YL  + G+ + +  +  
Sbjct: 124 SGDDQLSYKEISVGDLSIHPEAYLVKKRGESIELTHREFELIHYLAKHLGQVMTREHLLQ 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           A++G +D   +   V+  + +LR+K+ +   +   + ++R +GY +
Sbjct: 184 AVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPTWIITRRGVGYYL 228


>gi|331002565|ref|ZP_08326081.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408293|gb|EGG87769.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 93/231 (40%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     E         +  +  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLMKECYETKIVGDGESALADFDEFKPHLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRAKSGTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRYHS 124

Query: 122 SN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           SN             E   + V          G+   +P +E  +L +L ++  +   + 
Sbjct: 125 SNISIPDLHNGGEYVEYPDLVVNITNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+ +   F  + +   +GY  + 
Sbjct: 185 QLLDNIWG-YEYIGDTRTVDVHIKRLREKIHDN-QFWSISTVWGIGYKFEV 233


>gi|288956869|ref|YP_003447210.1| two-component response regulator [Azospirillum sp. B510]
 gi|288909177|dbj|BAI70666.1| two-component response regulator [Azospirillum sp. B510]
          Length = 248

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 92/226 (40%), Gaps = 8/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D A +          +G  +   +  E            +  ++  L       
Sbjct: 22  LVLIVEDEADILTLLKYNLEKEGFRVATASDGEEALLAAGEQTPHIVLLDWMLPL--MSG 79

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +R       +P+I ++        +   +SG DD + KP    E++AR+ A+ R
Sbjct: 80  LEVCRQLRRNAKTRDIPIIMLTARGEEGDRVRGLNSGADDYITKPFSPTELVARMRAVLR 139

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R    +++       + +               L   E R+L + M + G+  ++ Q+  
Sbjct: 140 RASPGMTDEVLTFADVTMDLAAHRVRRNSRDVHLGPTEFRLLRHFMQHPGRVFSREQLLD 199

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  VE   V+ HI +LRK +  +   D + + R  GY++D
Sbjct: 200 LVWG-HDVYVEPRTVDVHIRRLRKAMNEEDELDLIRTVRSAGYALD 244


>gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 231

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L   +G  +E  ++    + +    R     +   L   G+   
Sbjct: 4   ILIVEDEESFSDPLSYLLAKEGFEVEVVDN--GIDAITEFDRVGADLVLLDLQLPGQSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA S  P+I ++   S    +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 62  EVCRQLRARSSAPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEELMTTTVQAGPVRMDIERHVVSVNGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGYKFE 225


>gi|163845708|ref|YP_001633752.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222523414|ref|YP_002567884.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163666997|gb|ABY33363.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447293|gb|ACM51559.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 228

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++   A     G  +    +      +    + D+  ++  L   G   +
Sbjct: 5   ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALEEQPDLIVLDLMLP--GMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   +R  S V ++ ++        +     G DD + KP   RE++ARV AI RR + 
Sbjct: 63  EITARLRERSDVYILMLTARSDEMDRVAGLRVGADDYLTKPFSPRELVARVEAILRRQRN 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++      + +  + R+    G++  L   E  +L  L  N  + +++  +   ++
Sbjct: 123 KTAKSSLMRFTHVEIDPEAREARANGQLLELTPTEFDLLLALARNHNRVLSREDLIEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D    + VV+ ++S+LR+K+    G + + + R +GY  
Sbjct: 183 GA-DFFGTDRVVDVYVSQLRRKIEAITGENVIRTARGVGYRF 223


>gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 226

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVATT--GPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|49477096|ref|YP_035355.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196037687|ref|ZP_03104998.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218902316|ref|YP_002450150.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228926259|ref|ZP_04089333.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120744|ref|ZP_04249987.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|254725504|ref|ZP_05187286.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|49328652|gb|AAT59298.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196031929|gb|EDX70525.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218536850|gb|ACK89248.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228662749|gb|EEL18346.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228833356|gb|EEM78919.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 234

 Score =  250 bits (640), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942]
 gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942]
          Length = 236

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L  K    +
Sbjct: 6   ILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVEEIQPDLILLDIMLPNK--DGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 64  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQLT 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S+N    G + +F D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 124 TAPAEEESSSNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|206968610|ref|ZP_03229566.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206737530|gb|EDZ54677.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 234

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|256823309|ref|YP_003147272.1| two component transcriptional regulator PhoB, winged helix family
           [Kangiella koreensis DSM 16069]
 gi|256796848|gb|ACV27504.1| two component transcriptional regulator PhoB, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKVL 61
           ++++D   +++         G  +E   + E    L       D+  ++  L   G   +
Sbjct: 6   LILEDERDIREMLAFCMQQAGYQVEQAATAERVFGLLKEGFVPDIMLVDWMLP--GASGV 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL + ++    +  VP+I ++        +   ++G DD V KP   RE+LARV A+ RR
Sbjct: 64  ELTKKLKKDQKYQDVPVIMLTARGEEDDRVQGLEAGADDYVVKPFSPRELLARVQAVLRR 123

Query: 119 LKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               NN   +   G I++ + G   ++ GE   L   E +IL + M++  +  ++ Q+  
Sbjct: 124 SGKGNNPSEQISHGDIQLDTAGHRVQINGEEVHLGPTEYKILHFFMSHPERVYSRGQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++G     VEE  V+ HI +LRK L++    + V + R  GY  
Sbjct: 184 SVWGQ-QVVVEERTVDVHIRRLRKALQDYNVENYVQTVRGSGYRF 227


>gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
 gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
          Length = 238

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G  +E   + + +E L+ +     + I   L+      +
Sbjct: 5   ILVIEDEFSIATLLKYNLEQAGYLVE--TAADGQEGLEKAIDIQPNLILLDLMLPKLDGM 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + IR      P+I ++        +   + G DD + KP   RE+LARV A+ RR  
Sbjct: 63  EVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFT 122

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +      E G +RVF +  +  +Q E      +E  +L YL+ N+ + + +
Sbjct: 123 QNVVSDEKDEPQEKMFEFGQLRVFPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY  +
Sbjct: 183 DQLLSAVW-KYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFE 233


>gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
 gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
          Length = 226

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 103/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +    +   +G   E F +    E + +  R     +   ++  G   +
Sbjct: 4   ILIVEDEESYSEPLAYMLKKEGY--EAFVAATGPEGIDTFERGGADLVLLDVMLPGMSGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ S VP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  DVCRELRSRSSVPIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVLRRRGE 121

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    ++    G + +  +     V G+   +P +E  +LE LM N G+ + + Q+   +
Sbjct: 122 AEAGESDELVVGRVAMDVERHVVTVGGKGVAMPLKEFELLEMLMRNEGRVLTRMQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G  D   +   ++ HI +LR K+    G    + + R LGY ++
Sbjct: 182 WG-SDYVGDTKTLDVHIKRLRAKIEPDPGLPQHILTVRGLGYKLE 225


>gi|301052758|ref|YP_003790969.1| response regulator [Bacillus anthracis CI]
 gi|300374927|gb|ADK03831.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 234

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQAVSNEQKAHSSSFGRFEIDRYSAELTVDGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|229090161|ref|ZP_04221411.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693238|gb|EEL46949.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 234

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVIPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEQVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|51893644|ref|YP_076335.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857333|dbj|BAD41491.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 233

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 13/231 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   + D        +G  +   ++    + L+  A ED   +   ++  G   
Sbjct: 5   LILVVDDEQAIADLIEIHLLAEGYRVRKADN--GADALRIVAEEDPDLVVLDIMMPGMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ R IR    VP++ +S        +    +G DD + KP +  E++ARV A  RR  
Sbjct: 63  LEVCRAIRRERNVPILMLSAKSEDVDKILGLKTGADDYLTKPFNPLELVARVKAQLRRYL 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G +R+   GR     G    L   E  IL  L ++ G+  +  
Sbjct: 123 SLNPASAAAREPGVLAVGGLRIDPLGRSVFKDGREIALTPTEFDILLLLASHPGRVFSSE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +IF  ++         N V  HI +LR+K+ +       + +   +GY I+
Sbjct: 183 EIFERVWKEH-YFQSNNTVMVHIRRLREKVEDDPSHPTLIRTVWGVGYKIE 232


>gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
 gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
          Length = 251

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + + EE L+ +  EDV      ++  G    
Sbjct: 18  ILVVDDDPAILELVGYNLAKEGYDV--LKAYDGEEALKLANEEDVDMFIVDIMLPGMDGF 75

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IR    +   P+I +S        +   + G DD + KP   RE+LARV AI+RR
Sbjct: 76  ELVRKIRSMEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 135

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           L  +         +     + +  +  + +V+G+   L   E  +L +L  N GK  ++ 
Sbjct: 136 LSAAVQSKEERPKKITAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 195

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 196 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 244


>gi|313905040|ref|ZP_07838410.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470110|gb|EFR65442.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 229

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG  +      E    +      D+  ++  L       L+
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGYEVSCAYDGEEALNMAKENTYDIILLDLMLP--KMNGLD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR +  
Sbjct: 64  VCQQIREFSSVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRARKP 123

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     + G +++  D R   +      L  +E  +L+ L+ N  K  ++  + + 
Sbjct: 124 EKAEEKTKVVQAGDLKLDCDSRRVFIGDGEVNLTAKEFDVLQLLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+ +       V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEDNPSEPRYVHTKWGVGYYF 227


>gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 227

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +    +   +G  +    + +    L    R     +   ++  G    
Sbjct: 4   LLVVEDEESFSEALSFMLEREGFDVAV--AADGHAALSDFERHGADLVLLDVMLPGLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRALRQKSSVPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRGS 121

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +       E G +R+  +     V G    LP +E  +LE  + N G+ + + Q+   
Sbjct: 122 EPDEAAPVTLEAGGVRMDVERHVVTVHGAAVALPLKEFELLEMFLRNTGRVLTRGQLIDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+ ++ G    + + R LGY  +
Sbjct: 182 VWG-SDYVGDTKTLDVHVKRLRAKIESEPGNPRHLVTVRGLGYKFE 226


>gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
          Length = 234

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 107/231 (46%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    +   EE L+   +  +  +   L+  G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSA--AATGEEGLELFTKGGIDLVLLDLMLPGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD + KP   RE+LARV A+ RR ++
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             + AE          G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 VADAAESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID 
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDV 231


>gi|78484886|ref|YP_390811.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78363172|gb|ABB41137.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++D            +    + E    L    + D   ++  L   G   +
Sbjct: 6   ILVVEDEAAIRDMLSFTLTAANYKVIEAPNAEQGWKLLLEHQPDCVLLDWMLP--GVSGI 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + IR + Q    P+I ++        +  F+SG DD V KP   R ++ARV A+ RR
Sbjct: 64  SLAQRIRQNDQTATTPIIMLTARGEENDQVQGFESGADDYVVKPFSPRALVARVKALLRR 123

Query: 119 LKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +  +    GP+++        V  E   L   E +++++ M +  +   + Q+  
Sbjct: 124 QSPEKSTLDLIKIGPLKLDLSSYRFTVNDEEVKLGPTEFKLMQFFMTHSNRVYTRVQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  +  VEE  V+ HI +LRK L      D + + R  GY  
Sbjct: 184 QVWGE-NVVVEERTVDVHIRRLRKLLDPVGAADYIQTVRGAGYRF 227


>gi|160878314|ref|YP_001557282.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426980|gb|ABX40543.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 238

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 97/233 (41%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +    +     E         + ++  ++  L   G    
Sbjct: 7   ILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S +P+I +S    +   +   + G DD + KP   +E++ARV A+ RR+  
Sbjct: 65  EVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124

Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           S + +E               + +          G+   +P +E  +  +L ++  +   
Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + Q+   I+G ++   +   V+ HI +LR+K+++ + +    +   +GY  + 
Sbjct: 185 REQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHISWRL-STVWGIGYKFEV 235


>gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 99/232 (42%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      +       +   D   ++  L       L
Sbjct: 5   ILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNESFDFIVLDLMLPE--MDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R +    P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKQLRQNKIMTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRTK 122

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +           +   G + ++SD  +  ++G    L  +E  +L YL  ++G+ + + 
Sbjct: 123 AAKRSEKDDNEKEKIVIGDVEIYSDNYEVFLKGNQLELTPKEFELLLYLANHKGRVMTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           Q+ +A++  ++   +  +V+ HIS LR+K+         + + R LGY ++ 
Sbjct: 183 QLLNAVWN-YEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLEV 233


>gi|291562930|emb|CBL41746.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 236

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 95/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     E         + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLMKECYDTKIVGDGESALKEVPVFKPNLILLDLMLP--GMDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRTTSQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 S-----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +               E   + V         +G    +P +E  +L +L ++  +   +
Sbjct: 125 APVSMSAATKQQGEYVEYPNLIVNLTNYSVLYKGHSVDMPPKELELLYFLASSPNQVFTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            Q+   I+G ++   +   V+ HI +LR+K+R+   +    +   +GY  + 
Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIRDDENWAL-STVWGIGYKFEV 234


>gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 237

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +  + + + EE L+  A  D   I   L+      L
Sbjct: 7   ILVVDDEKPISDIVKFNLTKEGYEV--YTAYDGEEALEKVAEVDPDLILLDLMLPKMDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 65  EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 124

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +N+    G + +  D       G    L  RE  ++ YL  + G+ + +  +
Sbjct: 125 AAKEADDNANSELTIGDLTIHPDAYMVTKNGAAIELTHREFELMHYLAKHLGQVMTREHL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 185 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYL 231


>gi|261346399|ref|ZP_05974043.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rustigianii DSM 4541]
 gi|282565717|gb|EFB71252.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rustigianii DSM 4541]
          Length = 229

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +   +G      +  +           D+  ++  + G  G +V
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +   A   VP++ ++     +  +   + G DD + KP   +E++ARV AI RR+ 
Sbjct: 65  IKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRIS 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +  E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMATEDIIEMNGLVLDPTSHRVTSNETPIDMGPTEYKLLHFFMTHPERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L  +     + + R  GY  
Sbjct: 185 GA-NVYVEDRTVDVHIRRLRKALEQEGHDKMIQTVRGTGYRF 225


>gi|294501968|ref|YP_003565668.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
 gi|294351905|gb|ADE72234.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
          Length = 235

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            +++DD   + D        +G  +  F + +  E L+       ++  ++  L  K   
Sbjct: 5   ILVVDDEKPIADILKFNLQKEGYEV--FCAYDGVEALEKVEEVQPEMILLDIMLPQK--D 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR 
Sbjct: 61  GMEVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRH 120

Query: 120 KV--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +           N    G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 121 QQVAAPTEESETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 181 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYL 229


>gi|238919113|ref|YP_002932627.1| phosphate regulon transcriptional regulatory protein PhoB,
           [Edwardsiella ictaluri 93-146]
 gi|238868681|gb|ACR68392.1| phosphate regulon transcriptional regulatory protein PhoB, putative
           [Edwardsiella ictaluri 93-146]
          Length = 229

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D    +   +G       S +           D+  ++  L   G   +
Sbjct: 5   ILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + ++   A   +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLIKQLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             + +        V      +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMALEESISLQGLSLDPISHRVTVHDSAVDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEGSGHDRMVQTVRGTGYRF 225


>gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
 gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 248

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +      E    +    + D+  ++  L       +E
Sbjct: 24  LIVEDEEALVQLLQYNLQSEGYEVGVAMDGEMALLMVEERQPDIVLLDWMLP--KLSGIE 81

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R+      +P+I ++        +   D+G DD + KP    E+ AR+ A+ RR+
Sbjct: 82  VCRRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMRRI 141

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   + ++   G + V          G+   L   E R+L+YL+ + G+  ++ ++  A+
Sbjct: 142 RPGLTEDKVVVGDLEVDRTAHKVARAGQQVHLGPTEFRLLDYLIQHPGRVFSRERLLDAV 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  VE   V+ H+ +LRK L+ +   DP+ + R  GY+++
Sbjct: 202 WG-SDIYVEARTVDVHVGRLRKALKMEGLVDPIRTVRSAGYALN 244


>gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 242

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD     +  +     +G      N  E    L  S   D+  ++  L       L+
Sbjct: 14  LIADDEPSFVEALVLGLTREGFETIVANDGEEALALSRSHHPDLILLDVMLPR--LSGLD 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       T+   + G DD V KP    E++AR+ A  RR K  
Sbjct: 72  VCRTIRQESSVPIIMVTARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRRTKHQ 131

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +    E+  I V+ D    +V+G    LP +E  +L   + N G+ + +  I   
Sbjct: 132 GQAQAAEEILESHGITVYVDRHQVDVRGTEVRLPPKEFDLLLLFLRNPGRVLTRDLILDR 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+  +      + + R +GY ++
Sbjct: 192 VWG-SDYYGDTKTLDVHVKRLRSKIEPDPNNPSIIATVRGVGYRLE 236


>gi|169824288|ref|YP_001691899.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|167831093|dbj|BAG08009.1| two-component response regulator [Finegoldia magna ATCC 29328]
          Length = 238

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 10/224 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I    ++G    GF      +    S+  D+  ++  L   G+  
Sbjct: 17  MICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLP--GKSG 74

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ + IR       +P++ ++   +    +   DSG DD + KP    E+LARV A+ R
Sbjct: 75  LEILKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLR 134

Query: 118 RLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R  +S  +++     I +  D R   V GE   L  +E  +L YL++N GK + +  I +
Sbjct: 135 RSSLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMT 194

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+G FD   E   V+ HI+ LR+KL+N      + + R LGY 
Sbjct: 195 KIWG-FDFEGESRTVDVHIATLRQKLKNA--SSIIKTIRNLGYK 235


>gi|324325234|gb|ADY20494.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 234

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHASSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 223

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    E L    R     +   L+  G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAV--AATGPEGLDEFERNGADLVLLDLMLPGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|228964165|ref|ZP_04125288.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795515|gb|EEM42999.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 236

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVMLP--GQSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 66  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 126 KQAVPHEQNSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233


>gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 239

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 98/232 (42%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLP--KMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +               + G +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVSESPDEESIKIGELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 DQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLE 233


>gi|229029069|ref|ZP_04185168.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732349|gb|EEL83232.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 218

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAGNGKEALKKLETDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|229056843|ref|ZP_04196242.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228720493|gb|EEL72062.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDVDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N + +       G   +     +  V G V     +  ++L +   N     +K +++
Sbjct: 124 KQNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230


>gi|206976559|ref|ZP_03237465.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206745242|gb|EDZ56643.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 234

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRKKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +     +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAQSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|21222625|ref|NP_628404.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|7242751|emb|CAB77324.1| putative response regulator [Streptomyces coelicolor A3(2)]
 gi|298285547|emb|CAD67559.2| regulatory protein [Streptomyces lividans]
          Length = 223

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIATT--GPDGLDEFERNGADLVLLDLMLPGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 100/231 (43%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVAFQKATTERPDLIILDLMLP--KMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +           N      +++  +  +   +GE   L  +E  +L YL  N+G+ + + 
Sbjct: 123 LQEEQIPEVPDENSIMISELKILPEFYEAYFRGEKLELTPKEFELLVYLARNKGRVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           Q+ SA++  +D A +  +V+ HIS LR K+ +       + + R LGY ++
Sbjct: 183 QLLSAVWN-YDFAGDTRIVDVHISHLRDKIEHNTKKPAYIKTIRGLGYKLE 232


>gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 228

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D  ++    +       ++ +    L       +  ++  +       L
Sbjct: 8   ILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPE--MDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S VP+I ++        +     G DD + KP   RE+LAR+ A  RR   
Sbjct: 66  TACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + + ++ R   V G+   L R+E  +L   + N  K  ++ Q+   I
Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D       V++HI  LR KL    G   + +   +GY  +
Sbjct: 186 WGA-DYIGNLRTVDTHIKTLRLKLGEAGGS--IQTVWGIGYKFE 226


>gi|160900345|ref|YP_001565927.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365929|gb|ABX37542.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 231

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   + +        +G            +    +   DV  ++  L   G   
Sbjct: 6   MVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVTAQRELDAVLPDVILLDWMLP--GASG 63

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L L R  RA S+   VP++ ++        +   D+G DD + KP   +E+LAR+ A+ R
Sbjct: 64  LSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLR 123

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R       ++   G + + +       QG++  +   E ++L YLM +  +  ++ Q+  
Sbjct: 124 RRAPEQIQDKVNIGELVLDAAAHRVSWQGDMIKVGPTEFKLLHYLMKHPERVHSRAQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G     +EE  V+ H+ +LR+ L        +++ R  GY +
Sbjct: 184 KVWGDH-VFIEERTVDVHVKRLREALGMAGA--LIETVRGAGYRL 225


>gi|219667295|ref|YP_002457730.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537555|gb|ACL19294.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 234

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 101/229 (44%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A++++        +G ++           L +  + D+  ++  L       L
Sbjct: 4   ILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPE--LDGL 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + IR     + +PLI +S    +   +   + G DD + KP   RE+LAR+ A  R 
Sbjct: 62  DVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLRE 121

Query: 119 LKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + ++         G + ++ +     ++GE   L  +E  +L   M    +  ++  + 
Sbjct: 122 ERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++G +  + +   V+ HIS LR KL++      ++S R +GY +  N
Sbjct: 182 QKVWG-YTVSGDTRTVDVHISNLRSKLKSV--SPIIESVRGVGYRLAVN 227


>gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241]
 gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241]
          Length = 223

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++  +       L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPE--MDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 223


>gi|296138387|ref|YP_003645630.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296026521|gb|ADG77291.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 229

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                 SA  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTVVTDGAEALRHFDSAGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADT 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                + +   E GP+R+  +     V GE   LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 AGGEGLDDGVLEGGPVRMDVERHVVTVAGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEADPANPKHLVTVRGLGYKLE 228


>gi|302870792|ref|YP_003839428.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573651|gb|ADL41442.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 230

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 104/229 (45%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD   + D        +G  +    S + E+ L    S   D+  ++  L      
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVT--TSYDGEDALNRIKSGNFDMVLLDVMLP--KID 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + +R  S VP+I I+        +   + G DD + KP   RE++AR+ A  RR 
Sbjct: 62  GFSVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRT 121

Query: 120 KVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S+ +     + G + +  +  + +  G++  L  RE  +L++LM+ +G+  ++ ++  
Sbjct: 122 AQSSAQDGKVLKAGALTLNPETFEVKKNGKIIELTVREYELLKFLMSQKGQVFSREELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
            ++  ++   +   V+  + +LR+K+ +       + +KR +GY  + N
Sbjct: 182 KVWD-YEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229


>gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    E L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAV--AATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|15640738|ref|NP_230368.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121590901|ref|ZP_01678224.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80]
 gi|121728615|ref|ZP_01681635.1| DNA-binding response regulator PhoB [Vibrio cholerae V52]
 gi|147674650|ref|YP_001216209.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|153216130|ref|ZP_01950285.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587]
 gi|153803530|ref|ZP_01958116.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3]
 gi|153818850|ref|ZP_01971517.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457]
 gi|153823136|ref|ZP_01975803.1| DNA-binding response regulator PhoB [Vibrio cholerae B33]
 gi|153827132|ref|ZP_01979799.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MZO-2]
 gi|153831184|ref|ZP_01983851.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39]
 gi|227080898|ref|YP_002809449.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2]
 gi|229505665|ref|ZP_04395175.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae BX 330286]
 gi|229510663|ref|ZP_04400142.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae B33]
 gi|229513140|ref|ZP_04402606.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TMA 21]
 gi|229517785|ref|ZP_04407229.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC9]
 gi|229523456|ref|ZP_04412863.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TM 11079-80]
 gi|229525367|ref|ZP_04414772.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae bv. albensis VL426]
 gi|229530150|ref|ZP_04419540.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae 12129(1)]
 gi|229608683|ref|YP_002879331.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MJ-1236]
 gi|254224992|ref|ZP_04918606.1| DNA-binding response regulator PhoB [Vibrio cholerae V51]
 gi|254285442|ref|ZP_04960406.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226]
 gi|254847860|ref|ZP_05237210.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10]
 gi|255744531|ref|ZP_05418482.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholera CIRS 101]
 gi|258623634|ref|ZP_05718625.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573]
 gi|258626940|ref|ZP_05721742.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603]
 gi|262161335|ref|ZP_06030446.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae INDRE 91/1]
 gi|262168827|ref|ZP_06036522.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC27]
 gi|262172206|ref|ZP_06039884.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           mimicus MB-451]
 gi|297581122|ref|ZP_06943046.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385]
 gi|298499143|ref|ZP_07008950.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MAK 757]
 gi|9655162|gb|AAF93884.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|99031006|gb|ABF61789.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|121547266|gb|EAX57389.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80]
 gi|121629123|gb|EAX61567.1| DNA-binding response regulator PhoB [Vibrio cholerae V52]
 gi|124114445|gb|EAY33265.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587]
 gi|124120940|gb|EAY39683.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3]
 gi|125622379|gb|EAZ50699.1| DNA-binding response regulator PhoB [Vibrio cholerae V51]
 gi|126510632|gb|EAZ73226.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457]
 gi|126519353|gb|EAZ76576.1| DNA-binding response regulator PhoB [Vibrio cholerae B33]
 gi|146316533|gb|ABQ21072.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|148873340|gb|EDL71475.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39]
 gi|149738998|gb|EDM53310.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MZO-2]
 gi|150424304|gb|EDN16241.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226]
 gi|227008786|gb|ACP04998.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2]
 gi|227012543|gb|ACP08753.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|229333924|gb|EEN99410.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae 12129(1)]
 gi|229338948|gb|EEO03965.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae bv. albensis VL426]
 gi|229339819|gb|EEO04834.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TM 11079-80]
 gi|229344500|gb|EEO09474.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC9]
 gi|229350033|gb|EEO14987.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TMA 21]
 gi|229350628|gb|EEO15569.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae B33]
 gi|229357888|gb|EEO22805.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae BX 330286]
 gi|229371338|gb|ACQ61761.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MJ-1236]
 gi|254843565|gb|EET21979.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10]
 gi|255737562|gb|EET92956.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholera CIRS 101]
 gi|258580764|gb|EEW05711.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603]
 gi|258584085|gb|EEW08843.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573]
 gi|261893282|gb|EEY39268.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           mimicus MB-451]
 gi|262022945|gb|EEY41651.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC27]
 gi|262029085|gb|EEY47738.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae INDRE 91/1]
 gi|297534438|gb|EFH73275.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385]
 gi|297543476|gb|EFH79526.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MAK 757]
 gi|327483513|gb|AEA77920.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio cholerae LMA3894-4]
          Length = 229

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEDAGHDKLIQTVRGAGYRF 225


>gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 233

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 101/223 (45%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +     +G  +    S E         + D+  ++  L   G    
Sbjct: 9   ILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAMEGKPDLVVLDVMLP--GMDGF 66

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R     + +I ++        +   + G DD V KP +  E+ AR+ A+ RR++
Sbjct: 67  EVCRLLREKLPDMAVIMLTARGQDIDKIMGLELGADDYVVKPFNPLELTARIRAVLRRIR 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   + +  +GP  +   G     +GE   L  RE  ++   M N GK  ++ +I +A+
Sbjct: 127 KAGLEDEKISSGPFMLDLKGHRVLKKGEELDLTPREFDLMALFMKNPGKAFSRDEILNAV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G  D   +   V+ HI +LR+K+ +  G  + +++   +GY 
Sbjct: 187 WGA-DYVGDPKTVDVHIRRLREKVEDDPGRPEYIETVWGIGYR 228


>gi|85713650|ref|ZP_01044640.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
 gi|85699554|gb|EAQ37421.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
          Length = 234

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLEAAGYEVETVARGDEADTGLKERIPDLLILDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA  +    P+I ++        +    +G DD V KP    E+LARV ++ RR
Sbjct: 63  ELCRRLRARPETKELPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +    G I +  D       G    L   E R+LE+ + + G+  ++ Q+ ++
Sbjct: 123 ASPARLASILTFGDIELDRDRHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLNS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DVYIDERTVDVHIGRLRKLLNPDGEADPIRTVRGAGYALD 226


>gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 234

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    +   EE L+   +  +  +   L+  G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSA--AATGEEGLELFTKGGIDLVLLDLMLPGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD + KP   RE+LARV A+ RR ++
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +  E          G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 VADATESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID 
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDV 231


>gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 229

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 103/224 (45%), Gaps = 7/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        ++G  +E   +L+ EE L+    E    I   ++      + 
Sbjct: 7   LVVDDEDKIRQVIGIYLTNEGYYVE--EALDGEEALRKFKAESWDLIVLDVMMPKMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S+VP+I ++        +   + G DD + KP   RE++AR+ A+ RR+   
Sbjct: 65  VCQEIRKVSKVPIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAVLRRVGTE 124

Query: 123 NNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +     +   + +    R+  V+ +   L  +E  +L  L  + G+  ++ Q+   ++
Sbjct: 125 EKKEGHLLKFPGMCMDLISREVLVKDKPITLTPKEFELLALLAKSTGRSYSREQLLEEVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   +   V++H+++LR KLR     + + +   +GY  + 
Sbjct: 185 G-FDYYGDVRTVDTHVNRLRDKLRAAGAGNFIKTVWGVGYKFEV 227


>gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL    G + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGE--GGNYIQTVWGVGYKFEV 223


>gi|229160351|ref|ZP_04288349.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623075|gb|EEK79903.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 218

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L     +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALTKLESDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEANGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 228

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 111/226 (49%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++        +G  +    + + +E L+  +   +  I   L+      +
Sbjct: 4   ILLVDDEEKIREVLRLYLEKEGFLV--LEAQDGKEALKRFSEHKIDLIILDLMLPEIDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR  S VP+I ++        +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 62  EIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRSSG 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K +++  + G + +  + R+ +V GE   L   E  +L YL+ NRGK +++ Q+ + 
Sbjct: 122 IPEKEASSVIKQGILEIHPEAREVKVNGEEVVLTPLEFDLLLYLVTNRGKALSREQLLAN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G +D   E   V++H+++LR+KL+       + +   +GY  + 
Sbjct: 182 VWG-YDYFGEARTVDTHVTRLREKLQEA--ASYIKTVWGVGYKFEV 224


>gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 244

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 101/243 (41%), Gaps = 25/243 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A++ +         G  +              S R D+  ++  L   G   L
Sbjct: 5   ILVVDDEAVLAETIAYNLEQAGYHVITAADGNSALDAARSERPDLIVLDIMLP--GMDGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R     +  P++ ++        +   + G DD V KP   RE+LARV A+ RR
Sbjct: 63  EVCRQLRRENKTATTPILMLTARGDEIDKVVGLEVGADDYVTKPFGRRELLARVRALIRR 122

Query: 119 L------------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
                              + +N     GP+R+   GR    +G+   L  ++  +L YL
Sbjct: 123 SDYVPGGEGENGEEPEQERRSANRELVAGPLRIDLAGRRVNCRGQDIELQPKQFELLAYL 182

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
           + NRG  + + Q+   ++G +D   +   V+ H+  LR+KL  +      + + R +GY 
Sbjct: 183 VRNRGTVLTRDQLLHNVWG-YDYVGDTRTVDVHVRWLREKLEEDPANPKLIQTVRGVGYV 241

Query: 220 IDW 222
             W
Sbjct: 242 FRW 244


>gi|165870463|ref|ZP_02215118.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|190568741|ref|ZP_03021645.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|164713958|gb|EDR19480.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|190560157|gb|EDV14138.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
          Length = 218

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL    G + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGE--GGNYIQTVWGVGYKFEV 218


>gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    E L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEV--AIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +VS    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVSPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|225863073|ref|YP_002748451.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225785922|gb|ACO26139.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 234

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEKKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 239

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 101/233 (43%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G S+   +  E    L      D+  ++  L       +
Sbjct: 5   ILVVDDEQSIVTLLKYNLEQAGYSVITAHDGEEGRDLALEEVPDLMILDLMLP--KIDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR     +P++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 63  EVCKQIRQQKVMIPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVMARVKAILRRSQ 122

Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                         +  + G ++VF +  +      +  L  +E  +L YL  NRG+ + 
Sbjct: 123 AVIDVAEHLRSEQKDYLQVGDLKVFPEQYEAYFAENLLELTPKEFELLMYLTENRGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           + Q+ SA++  +D A +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 183 RDQLLSAVWN-YDFAGDTRIVDVHISHLREKIETNTKKPAYIKTIRGLGYKLE 234


>gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 226

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G +     +   +E L+   R     +   L+  G    +
Sbjct: 5   LIVEDEESFADPLAFLLRKEGFTAAVATT--GQEALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR   +
Sbjct: 63  VCKQLRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEA 122

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      E GP+R+  +     V GE   LP +E  +LEYL+ N G+ + + Q+   ++
Sbjct: 123 EDMLPQVLEAGPVRMDVERHVVTVSGEEVSLPLKEFDLLEYLLRNVGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           G  D   +   ++ H+ +LR KL  +      + + R LGY  + 
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRSKLEPDPAEPRYLVTVRGLGYKFEV 226


>gi|225573005|ref|ZP_03781760.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039656|gb|EEG49902.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++     E    L  + + D+  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDDMDVDCAYDGEEALELAKANKYDIILLDLMLP--KMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR  + 
Sbjct: 64  VCQQIREFSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAHLE 123

Query: 123 ------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     + G +++  + R   +  +   L  +E  +LE L+ N  K  ++  + + 
Sbjct: 124 AKTQEKAKTVQVGELKMDCESRRVFIGDKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIESNPSEPKYVHTKWGVGYYF 227


>gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 231

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  ++     +  E L +    D+  ++  L   G   +E
Sbjct: 4   LIVEDEEALTTLLRYNLEAEGFLVDSAARGDDAELLLAERIPDLVLLDWMLP--GLSGIE 61

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R IRA  +    P+I ++        +    +G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LCRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLRRA 121

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           K +  ++R   G + +   G      GE   L   E R+LE+LM   G+  ++ Q+   +
Sbjct: 122 KPAHVSDRLAAGDLELDRTGHRVRRGGEELHLGPTEFRLLEFLMLAPGRVFSREQLLDGV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  ++E  V+ H+ +LRK L      DP+ + R  GY+ D
Sbjct: 182 WG-HDVYIDERTVDVHVGRLRKALNGPRQADPIRTVRGSGYAFD 224


>gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 226

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L G +G  +E  ++    + +    R     +   L   G+   
Sbjct: 4   ILIVEDEESFSDPLSYLLGKEGFEVEVVDN--GLDAITEFDRNGADLVLLDLQLPGQSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 62  EVCRQLRQRSTVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++  + GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEELISSTVQAGPVRMDIERHVVSVDGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRGKIEPDPSAPRFLVTVRGLGYKFE 225


>gi|160893753|ref|ZP_02074537.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
 gi|156864738|gb|EDO58169.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
          Length = 238

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 93/237 (39%), Gaps = 21/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +        +    +   +     E     A  ++  ++  L   G   
Sbjct: 6   ILIVDDDENIAELISLYLNKECYETQIAADGTSALEAFVEFA-PNLILLDVMLP--GMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++   IR  S VP+I +S    +   +     G DD + KP    E++ARV A+ RR  
Sbjct: 63  YQVCTEIRKQSNVPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRCN 122

Query: 121 VSNNR---------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
              +                 E   + V        ++G+   +P +E  +L +L +   
Sbjct: 123 SRTDNSQNYNPTNADHIGTYVEYDNLVVNISNYTVTLEGKNLEMPPKELELLYFLASRPN 182

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   + Q+   ++G ++   +   V+ HI +LR+KL +K  +  + +   +GY  + 
Sbjct: 183 QVFTREQLLDKLWG-YEYVGDTRTVDVHIKRLREKLTDKYNWS-IFTVWGIGYKFEV 237


>gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
 gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
          Length = 235

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++   + +  E ++     D   +   ++      +E
Sbjct: 12  LVVDDEKLIVKGLKFSLEQDDMEVD--TAYDGGEAVEKIKNNDYDIVLLDIMIPVYTGIE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + +++R  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 70  VCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAILRRSGKK 129

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +N  E   ++V  D R   V G+   L  +E  +LE LMA+  K  ++ ++ S 
Sbjct: 130 QAPVKQSNVMEVNGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELLST 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           I+G      +   V+ H+ +LR+K+  N      + +K  +GY
Sbjct: 190 IWGDS-YPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGY 231


>gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       DG  +   ++ + EE L    +     I   L+      L
Sbjct: 5   LLVVDDEPLLVKGLRYSLEQDGYEI--LSASDGEEALDKFNKGSFDLIILDLMLPKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR  SQ P+I ++      T +   + G DD + KP +  E+ AR+ A+ RR + 
Sbjct: 63  EVCQTIRQTSQTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVLRRAQS 122

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V          ++ + GR   + GE   L  +E  +L  L +N GK  ++  +   
Sbjct: 123 KEGNVGERVIHIDDFKINTMGRKVSIHGEEVNLTAKEFDLLLLLASNHGKVYSREALLEI 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G ++   +   V+ H+ +LR+K+  N      + +K  +GY  
Sbjct: 183 IWG-YEYFGDLRTVDVHVRRLREKVESNSSQPKYILTKWGVGYYF 226


>gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
 gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
          Length = 235

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            +++DD   + D        +G  +  F + +  E L+       ++  ++  L  K   
Sbjct: 5   ILVVDDEKPIADILKFNLQKEGYEV--FCAYDGVEALEKVEEVQPEMILLDIMLPQK--D 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR 
Sbjct: 61  GMEVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRH 120

Query: 120 KV--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +           N    G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 121 QQVAVPTEESETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 181 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYL 229


>gi|172059033|ref|YP_001815493.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991554|gb|ACB62476.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 236

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G S+   N              D+  ++  L       +
Sbjct: 6   ILVVDDEQPIADILKFKLEKEGYSVAVANDGVEALEKVEEFNPDLILLDIMLPL--MDGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S+VP+I ++   S   T+   + G +D V KP   RE+LARV A  R    
Sbjct: 64  EVCREVRKTSKVPIIMLTAKDSEIDTVLGLELGANDYVTKPFSSRELLARVKAHLRNVNT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        + G + + ++      Q +   L +RE  +L YL  N G+ + +  +
Sbjct: 124 VEAAPANAGPGPLKVGELYIDTNSHTVTRQDQKIELTQREFELLHYLAKNIGQVMTREHL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSTPIYIMTRRGVGYYL 230


>gi|218234767|ref|YP_002365906.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218162724|gb|ACK62716.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 234

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNNYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQTIPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13]
          Length = 242

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 18/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E         R D+  ++  L  K    +
Sbjct: 5   ILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEERFDMIVLDLMLPKK--DGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R H    P++ ++        +   + G DD + KP   RE++ARV AI RR++
Sbjct: 63  EVCKELRQHKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRMQ 122

Query: 121 V-------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                         ++ +   G +++  +  +   + E   L  +E  +L YL  N+G+ 
Sbjct: 123 QMTGNTEAPKVEEDTSEKIVIGDVKILPEHYEAYFREERLELTPKEFELLVYLSKNKGRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           + + Q+ SA++  +D A +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 183 LTRDQLLSAVWN-YDFAGDTRIVDVHISHLREKIETDTKKPTYIKTIRGLGYKLE 236


>gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G ++               +  D+  ++  L   G   L
Sbjct: 5   ILVVEDEAKLAQFIELELKYEGYTVTVAPDGLAGLTAARESHPDLILLDWMLP--GISGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP+I ++    +   +   D+G DD + KP    E+LARV A  RR +
Sbjct: 63  EICKRLRQTGDKVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANLRRTQ 122

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N        +R+    R+      +  L  +E  +LEYLM++  + + + QI   ++G
Sbjct: 123 EENPEEILFNDLRLNRSTREVYRANRLIELTAKEFELLEYLMSHPRQVLTRDQILERVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL        + + R +GY +
Sbjct: 183 -YDFMGDSNIIEVYVRYLRLKLEENGEKRLIQTIRGVGYVL 222


>gi|182680313|ref|YP_001834459.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636196|gb|ACB96970.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 252

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +          +G  +E     +  E     +  D+  ++  L   G   L
Sbjct: 26  ILLVEDEAALSTLLTYNLEAEGFEVESLECGDEAEARLDESLPDLVLLDWMLP--GVSGL 83

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IRA  +    P+I ++        +    +G DD + KP    E++ARV A+ RR
Sbjct: 84  EICRRIRAREKTRALPIIMLTARGEESEKIRGLATGADDYIVKPFSVPELMARVRALLRR 143

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +          G + +  +            L   E R+L++LM   G+  ++ Q+   
Sbjct: 144 SRPDRITGLLTAGDLSLDRENWRVHRGERHVHLGPTEFRLLDHLMGRPGRVFSRAQLLDG 203

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G   E ++E  V+ H+ +LRK L      DP+ + R  GYS D +
Sbjct: 204 VWGEAAE-IDERTVDVHVGRLRKALSIGEEQDPIRTVRGAGYSFDEH 249


>gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 229

 Score =  249 bits (638), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       +G+ ++     E           D+  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEKAKEKEYDMILLDIMLP--KLTGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR++  
Sbjct: 64  VCQQIREFSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRMRKE 123

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +        +G +++  +GR   + G+   L  +E  +LE L  N  K  ++  + + 
Sbjct: 124 EAKESFGKTLVSGDLKLDCEGRRVFIAGKEINLTAKEFDVLELLAKNPNKVYSRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+         V +K  +GY  
Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEAVPSDPKYVHTKWGIGYYF 227


>gi|319763169|ref|YP_004127106.1| phosphate regulon transcriptional regulatory protein phob
           [Alicycliphilus denitrificans BC]
 gi|330825232|ref|YP_004388535.1| two component transcriptional regulator PhoB [Alicycliphilus
           denitrificans K601]
 gi|317117730|gb|ADV00219.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alicycliphilus denitrificans BC]
 gi|329310604|gb|AEB85019.1| two component transcriptional regulator PhoB, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 233

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +        +G +       E  +    +   DV  ++  L   G   L+
Sbjct: 8   LVVEDEAAIAELIAVNLRHNGFTPIWAEDAEAAQRELDAVLPDVILLDWMLP--GMSGLQ 65

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  R+      VP++ ++        +   D+G DD + KP   +E+LAR+ A+ RR 
Sbjct: 66  LARKWRSAARTKGVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + + +       QG+   L   E ++L YLM +  +  ++ Q+   I
Sbjct: 126 APEQVADSVAIGALSLDAATHRASFQGQPLKLGPTEFKLLHYLMKHAERVHSRAQLLDKI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        +++ R  GY +
Sbjct: 186 WGDH-VYIEERTVDVHVKRLREALGEASA--MLETVRGAGYRL 225


>gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24]
 gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24]
 gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24]
          Length = 226

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAIATT--GPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|229068949|ref|ZP_04202243.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229078583|ref|ZP_04211141.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228704727|gb|EEL57155.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714233|gb|EEL66114.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 218

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++  +       L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPE--MDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032]
 gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032]
          Length = 242

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 103/235 (43%), Gaps = 18/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +    + + EE L+ +A E    I   L+      +
Sbjct: 5   ILVVDDEESIVTLLSYNLERAGYDV--VTARDGEEALEKAASEQPDLIVLDLMLPKMDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQ 122

Query: 121 VSN-------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            S              ++ + G +R+  +  +   Q E   L  +E  +L YL  ++G+ 
Sbjct: 123 QSQPAPTQEEKEEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           + +  + SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 LTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLE 236


>gi|149181603|ref|ZP_01860097.1| YclJ [Bacillus sp. SG-1]
 gi|148850717|gb|EDL64873.1| YclJ [Bacillus sp. SG-1]
          Length = 243

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 102/236 (43%), Gaps = 30/236 (12%)

Query: 3   VLIDDRAL---------VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL 53
           ++++D            +K+G    F  DG   EG+   +  EW       D+  ++  L
Sbjct: 13  LVVEDNESVTSMLEMFFIKEGIQGEFVHDG--AEGYQRYKEGEW-------DLVILDWML 63

Query: 54  IGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
              G   + + R IR   +Q+P+I ++   S    +   + G DD V KP     ++AR+
Sbjct: 64  P--GMDGVTICRKIREERTQIPIIMLTAKDSESDQVLGLELGADDYVTKPFSPLALMARI 121

Query: 113 AAIYRRLKVSNNR------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRG 165
            A+ RR +   N         T   ++  + R+  ++G     L  +E  +L YL  +  
Sbjct: 122 RAVTRRYQGEKNNTAESTDISTTDFQISKETREVLLKGVPLTNLTPKEFDLLYYLSQHPR 181

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++G +D   +E  V+ HI +LR K+ +      + +   +GY  D
Sbjct: 182 QVFSREQLLERVWG-YDFYGDERTVDVHIKRLRNKIGSN-EKPYLHTVWGVGYKFD 235


>gi|228919942|ref|ZP_04083297.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839758|gb|EEM85044.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 236

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVMLP--GQSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 66  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 126 KQTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233


>gi|228913796|ref|ZP_04077421.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228932498|ref|ZP_04095379.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827188|gb|EEM72941.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228845735|gb|EEM90761.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 234

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|229189308|ref|ZP_04316329.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594208|gb|EEK52006.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 234

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNHYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKPHSISFGRFEINQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus
           sphaericus C3-41]
          Length = 229

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G      ++           + D+  ++  L       +
Sbjct: 5   ILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQYREEQWDLILLDIMLPE--MSGI 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IRA  S+ P+I ++    ++  +   D G +D V KP    E+LAR+    R  +
Sbjct: 63  DVLKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQ 122

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++        G + +    R+    G+   L  RE  +L YLM +  + + + QI   +
Sbjct: 123 NASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   + NVV+ +I  +R+KL        + + R +GY +  N
Sbjct: 183 WG-FDYYGDTNVVDVYIRYVRQKLEIANATPIIQTVRGVGYVLKEN 227


>gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 226

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEV--AIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 236

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +                + D+  ++  L  +    +
Sbjct: 5   ILVVDDEKPIADILQFNLKKEGYEVHCAYDGNEALEKVEEVKPDLILLDIMLPQR--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   ++P+I ++   S    +   + G DD V KP  +RE++ARV A  RR + 
Sbjct: 63  EVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHQQ 122

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      N    G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 IAAKAGEEEETNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 230


>gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 94/226 (41%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++     F   G ++                + D+  ++  +        E
Sbjct: 7   LIVDDEKQIREILAIYFTQSGFTVAEAADGAEALIKVEQVKPDIVILDIMMPV--LDGFE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR +S VP+I ++        +   + G DD V KP + +E++ARV AI RR    
Sbjct: 65  VCQQIRKYSPVPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILRRTAAP 124

Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +   +R     +          G+   L  +ER +L  L ++ GK +++ Q+   +
Sbjct: 125 QQYTQADILRFPELEINMAEHTVIAFGKPVALANKEREVLWQLASHAGKVLSREQLLELV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +  +    +   V++H+ +LRKKL         + +   +GY  + 
Sbjct: 185 WD-YSYCGDTRTVDTHVKRLRKKLGVGPHSPWDIKTVWGIGYKFEV 229


>gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 226

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +   +       L   +  D++ ++  L   G   L
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYQVSVAHDGIAGLTLARDSSPDLAILDWMLP--GLTGL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA  S VP+I ++    +   +   D+G DD V KP    E+LAR+ A  RR +
Sbjct: 63  EICRRLRATGSTVPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQ 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  +   + +    R+   +     L  +E  +LEYL+++  +   + QI   ++G
Sbjct: 123 ETAEDLLQFEDLSLNRRTREVFREKRSIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL        + + R +GY++
Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEENNEKRLIHTVRGVGYAL 222


>gi|319779028|ref|YP_004129941.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Taylorella equigenitalis MCE9]
 gi|317109052|gb|ADU91798.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Taylorella equigenitalis MCE9]
          Length = 233

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      +  + L  +   D+  ++  L       L
Sbjct: 5   ILVVEDEPAIQELISVNLTFAGHKVLRALDAQQAKILIDAELPDLILLDWMLPTT--SGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +R+      +P+I ++   S    ++  ++G DD + KP   +E+LAR+ A+ RR
Sbjct: 63  SLARSLRSDERTQDIPIIMLTAKNSEHDKVEGLENGADDYITKPFSPKELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++      + +            +  L   E R+L + M +  +  ++ Q+   
Sbjct: 123 RAPQLTDDEISIAGLHLDPGSHRVTGNNTLLSLGPTEFRMLHFFMTHAERVFSRGQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     +EE  V+ HI +LRK L        +++ R  GY  
Sbjct: 183 VWGDH-VFLEERTVDVHIRRLRKALEPSGHDQLIETVRGSGYRF 225


>gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 223

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G       + +       +   D   ++  +       L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPE--MDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 223


>gi|163939018|ref|YP_001643902.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861215|gb|ABY42274.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 233

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++  I+R  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPILRQKTDCPIFFLTAKTSDVDKVSGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N + +       G   +     +  V G V     +  ++L +   N     +K +++
Sbjct: 124 KQNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230


>gi|256833297|ref|YP_003162024.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686828|gb|ACV09721.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 237

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++        +G  +    +           + D+  ++  L   G    
Sbjct: 4   ILVVEDEESYREPLTYQLTREGYDVVAVATGTEALSAYDDEQPDLVLLDLMLP--GLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R+   VP+I ++        +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCRELRSRGDVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARMRAVLRRHTS 121

Query: 122 SN-------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           ++                  GP+ +  +     V+G+    P +E  +LEYL+ N G+ +
Sbjct: 122 ASASESTDFRDDDDDQVLHAGPVAMDVERHVVTVRGDSVAFPLKEFDLLEYLLRNAGRVL 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            + Q+   ++G  D   +   ++ HI ++R K+    G    + + R LGY  
Sbjct: 182 TRGQLIDRVWG-SDYVGDTKTLDVHIKRIRAKIEEDPGSPQLILTVRGLGYKF 233


>gi|320012489|gb|ADW07339.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 275

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +      G  G  +   +         ++ R D+  ++  L G G    E
Sbjct: 46  LVVDDDPTVAEVAAGYLGRAGYDVGRADDGPAALESVAALRPDLVVLDLMLPG-GMDGFE 104

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA   VP+I ++        +   ++G DD V KP   RE++ RV A+ RR + +
Sbjct: 105 VCRRIRARGPVPVIMLTARGDEDDRILGLETGADDYVTKPFSPRELVLRVEAVLRRWRRT 164

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 G     I +    R     GE   L  RE  +L + + N G+   + ++   ++
Sbjct: 165 EPGPSAGIGGAGIVLEPLARRATRGGEDLCLTLREFDLLAFFLRNPGRAYTREELMREVW 224

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           G   +  + + V  H+ +LR K+         + +   +GY  D
Sbjct: 225 GW--DFGDLSTVTVHVRRLRGKVETDPARPALIQTVWGVGYRFD 266


>gi|228951584|ref|ZP_04113689.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229149424|ref|ZP_04277660.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634066|gb|EEK90659.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228808149|gb|EEM54663.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 234

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNNYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|261212177|ref|ZP_05926463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC341]
 gi|262402893|ref|ZP_06079454.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC586]
 gi|260838785|gb|EEX65436.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC341]
 gi|262351675|gb|EEZ00808.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC586]
          Length = 229

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREEVTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEDAGHDKLIQTVRGAGYRF 225


>gi|196247939|ref|ZP_03146641.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|196212723|gb|EDY07480.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 104/221 (47%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G+++    + +    +  + + D+  ++  +        
Sbjct: 4   ILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPE--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F  G DD + KP    E++ARV A+ +R ++
Sbjct: 62  ELCRELRDYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++  + G + +     +  +     PLP +E  +L  L +  GK   + ++   I+G 
Sbjct: 122 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 181 YDYEGDERTVDVHIKRLRERFAQPNAPFFIRTIRGLGYRLE 221


>gi|170744715|ref|YP_001773370.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198989|gb|ACA20936.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 234

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++     +  +        D+  ++  +   G   +
Sbjct: 5   ILIVEDEEPLTLLLRYNLEAEGFTVDAVARGDEADIRLREQVPDLVLLDWMVP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IRA  +    P+I ++        +    +G DD + KP    E+LARV A+ RR
Sbjct: 63  ELCRRIRARRETERLPVIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K ++  +    G I +         +G    L   E ++LE+LM + G+  ++ Q+   
Sbjct: 123 AKPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK +      DP+ + R  GYS D
Sbjct: 183 VWG-HDVYIDERTVDVHIGRLRKAINRPRRPDPIRTVRGSGYSFD 226


>gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 234

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +  + + + EE L+  A  +   I   L+      L
Sbjct: 4   ILVVDDEKPISDIVKFNLTKEGYEV--YTAYDGEEALEKVAEIEPDLILLDLMLPKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +  +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 121

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S   AE         G + +  D       GE   L  RE  ++ YL  + G+ + +  +
Sbjct: 122 SAKEAEEAPNAELTIGDLTIHPDAYMVTKNGEAIELTHREFELMHYLAKHLGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYL 228


>gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
 gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
          Length = 229

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG  ++     E    L      D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGYDVDCAYDGEEALKLAKENAYDIILLDVMLP--KYDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR +S VP+I ++        +   D G DD + KP +  E+ AR+ AI RR+   
Sbjct: 64  VCQQIREYSDVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRVSKR 123

Query: 123 NNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   E       G +++  + R   +  +   L  +E  +LE L  N GK  ++  + + 
Sbjct: 124 DKNQENEKVIVKGEMKIDCESRRVIIGEKEINLTAKEFDLLELLAMNPGKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYF 227


>gi|91680588|emb|CAJ45044.1| PhoP protein [Streptomyces natalensis]
          Length = 223

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEV--AIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVAPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|75761429|ref|ZP_00741398.1| Two-component response regulator yvrH [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228899799|ref|ZP_04064045.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228906846|ref|ZP_04070715.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|74491087|gb|EAO54334.1| Two-component response regulator yvrH [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228852850|gb|EEM97635.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228859818|gb|EEN04232.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 236

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVMLP--GQSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 66  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 126 KQAVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233


>gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 229

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 103/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +     F  +G  +    + + +E L  +A +    +    +  G   +
Sbjct: 6   LLLVEDDTALAELVEYRFRGEGYDVR--TTADGDEALLLAAEDTPDLVLLDWMIGGTSGI 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R   A + VP+I ++        +   ++G DD V KP   RE++ARV A+ RR
Sbjct: 64  EVCRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPRELIARVGAVLRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++   +      G + +         + +   +   E R+L + M + G+  ++ Q+  A
Sbjct: 124 VRPALAGETITVGDLSLDPTAHRVTRKAQSIKIGPTEFRLLRHFMEHPGRVFSRGQLLDA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G     +E   V+ HI +LR+ +      DPV + R  GY+++
Sbjct: 184 VWGSG-SDIELRTVDVHIRRLRQAIAIPGAPDPVRTVRSAGYALE 227


>gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
 gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
          Length = 229

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G      ++           + D+  ++  L       +
Sbjct: 5   ILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQYREQQWDLILLDIMLPE--MSGI 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IRA  SQ P+I ++    ++  +   D G +D V KP    E+LAR+    R  +
Sbjct: 63  DVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQ 122

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++        G + +    R+    G+   L  RE  +L YLM +  + + + QI   +
Sbjct: 123 KASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   + NVV+ +I  +R+KL        + + R +GY +  N
Sbjct: 183 WG-FDYYGDTNVVDVYIRYVRQKLEIANVTPIIQTVRGVGYVLKEN 227


>gi|291445797|ref|ZP_06585187.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348744|gb|EFE75648.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 223

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 2   LVVEDEEFFSDALSYMLRKEGFEV--AIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|188584441|ref|YP_001927886.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179347939|gb|ACB83351.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 234

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++     E  +        D+  ++  +   G   +
Sbjct: 6   ILIVEDEESLTTLLRYNLEAEGFLVDVAIRGEEADLRLHETTPDLVLLDWMVP--GLSGI 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IRA  +    P+I ++        +    +G DD V KP    E+LARV A+ RR
Sbjct: 64  ELCRRIRARRETERLPVIMLTARGEEADRVRGLSTGADDYVVKPFSVPELLARVRALLRR 123

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K ++  +    G I +         QG    L   E ++LEYLM + G+  ++ Q+   
Sbjct: 124 AKPAHVADLLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDG 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS D
Sbjct: 184 VWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFD 227


>gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 226

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L G +G  +E  ++    + +    R     +   L   G+   
Sbjct: 4   ILIVEDEESFSDPLSYLLGKEGFEVEVVDN--GLDAITEFDRNGADLVLLDLQLPGQSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   +    +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 62  EVCRQLRQRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++  + GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEELISSTVQAGPVRMDIERHVVSVGGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRGKIEPDPSAPRYLVTVRGLGYKFE 225


>gi|29830515|ref|NP_825149.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|290959412|ref|YP_003490594.1| phosphate two component system response regulator [Streptomyces
           scabiei 87.22]
 gi|29607627|dbj|BAC71684.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
 gi|260648938|emb|CBG72052.1| phosphate two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 223

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIATT--GPDGLDEFERNGADLVLLDLMLPGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|82703349|ref|YP_412915.1| two component transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411414|gb|ABB75523.1| two component transcriptional regulator, winged helix family
           [Nitrosospira multiformis ATCC 25196]
          Length = 234

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++    + E    + +    D+  ++  L   G    
Sbjct: 5   ILVVEDEPAIQELISYSLRQAKHTVSSTKNAEEAMKIINHTLPDLVLLDWMLP--GMSGA 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  R++R       +P+I ++        +   +SG DD + KP   RE+LAR+ A+ RR
Sbjct: 63  DFARMLRRAARTKDIPIIMLTARADESDKVTGLESGADDYITKPFSPRELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +++  E G +R+ S             L   E R+L YLM +  +  +++Q+   
Sbjct: 123 RAPEAADDVVEIGGLRLDSATHRVTANEIEVVLGPTEFRLLHYLMTHSERVHSRSQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VE+  V+ HI +LRK L N      V + R  GY +
Sbjct: 183 VWGDH-VFVEDRTVDVHIRRLRKALENVDKDGLVQTVRGSGYRL 225


>gi|317507256|ref|ZP_07965002.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254450|gb|EFV13774.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 228

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G   E   + +    L    R     +   L+  G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGF--ETVIAGDGPTALTEFDRTGADIVLLDLMLPGMGGND 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE+ AR+ A+ RR + +
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQEA 122

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +        E GPI++  D     V G+   LP +E  +LEYLM NRG+ + + Q+   
Sbjct: 123 ESETSLDGALEAGPIKLDVDRHLVSVHGKQVTLPLKEFDLLEYLMRNRGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+ +     + + + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEDDPAKPERLVTVRGLGYKLE 227


>gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 242

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 103/235 (43%), Gaps = 18/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +    + + EE L+ +A E    I   L+      +
Sbjct: 5   ILVVDDEESIVTLLSYNLERAGYDV--VTARDGEEALEKAASEQPDLIVLDLMLPKMDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQ 122

Query: 121 VSN-------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            S              ++ + G +R+  +  +   Q E   L  +E  +L YL  ++G+ 
Sbjct: 123 QSQPTPTQEEKDEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           + +  + SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 LTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLE 236


>gi|117619543|ref|YP_855794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560950|gb|ABK37898.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 229

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G   E   + +F + L          I    +  G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGY--ETVEAEDFADGLAKVREPYPELIVLDWMMPGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++      Q+P++ ++     +  +   ++G DD + KP   +E+ AR+ A+ RR
Sbjct: 63  QFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  +   E   +++         + +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 VSPTSVDEVIEVQGLKLDPVSHRVSAEEKALDMGPTEFKLLHFFMTHPERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEETGHDRLIQTVRGAGYRF 225


>gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus ATCC 14579]
 gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus ATCC 14579]
 gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 239

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLP--KMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +                   +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVAEAPDEDSITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 DQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLE 233


>gi|118476709|ref|YP_893860.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196044305|ref|ZP_03111541.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|229183424|ref|ZP_04310649.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|118415934|gb|ABK84353.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196024944|gb|EDX63615.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|228600008|gb|EEK57603.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 234

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   +    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTADLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|228907029|ref|ZP_04070894.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228852620|gb|EEM97409.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 218

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   + + +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAEDGKEALKKLETDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
          Length = 238

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 98/231 (42%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E       + R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALQKAVTERPDLIILDLMLP--KMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + +         N      +++  +  +   Q E   L  +E  +L YL  N+G+ + + 
Sbjct: 123 LQDEQVPEVQDENSIHIVDLKILPEFYEAYFQEEKLELTPKEFELLVYLARNKGRVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 QLLSAVWN-YDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLE 232


>gi|312795607|ref|YP_004028529.1| phosphate regulon transcriptional regulatory protein phoB
           [Burkholderia rhizoxinica HKI 454]
 gi|312167382|emb|CBW74385.1| Phosphate regulon transcriptional regulatory protein phoB
           [Burkholderia rhizoxinica HKI 454]
          Length = 256

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 28  ILVIEDEPAISELIAVNLQHAGHCPIRAYNAEQAQRLISDVLPDLVLLDWMLP--GKSGV 85

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R++     +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 86  AFARELRSNERTKHIPIIMLTARGEEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 145

Query: 119 L--KVSNNRAETGPIRVFSDGRDP--EVQGE--VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+            GE     L   E R+L + M +  +  ++TQ
Sbjct: 146 RAPQLTEDSVSINGLRLDPATHRVAASRNGEQTQLDLGPTEFRLLHFFMTHPERVHSRTQ 205

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 206 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 252


>gi|253573896|ref|ZP_04851238.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846373|gb|EES74379.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 239

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+ +E  + L  S + D+  ++  L   G+  
Sbjct: 5   ILVVDDEKPIADILKFNLEKEGYEVVLAFDGIEATQ-LAFSEQPDLILLDLMLP--GKDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +RA  + P+I ++        +   + G DD V KP   RE+LARV A  RR +
Sbjct: 62  MDVCREVRAKLETPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQ 121

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      +        + + +D       GE   L  RE  ++ YL+ N GK + +
Sbjct: 122 KAAAAAEGAEETKQGISLFELFIDTDMYTVYKNGEPLDLTHREFELMHYLVKNSGKVMTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +  A++G F+   +   V+  I +LR+K+  +    + + ++R LGY +
Sbjct: 182 EHLLQAVWG-FEYFGDVRTVDVTIRRLREKIEKDPSKPEYILTRRGLGYMM 231


>gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
           ATCC 53653]
          Length = 226

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    E L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEV--AIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|68537004|ref|YP_251709.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|260579348|ref|ZP_05847230.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|68264603|emb|CAI38091.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|258602477|gb|EEW15772.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 230

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +    L   +G  +  F + +    L + A ED+  I   L+  G    E
Sbjct: 5   LIVEDEQSLAEPLAFLLKKEGFEV--FMAPDGPTALDTFAAEDIDIILLDLMLPGMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRQTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYFARELIARIRAVLRRGGEV 122

Query: 123 NNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       +   + +  +     V G+  P+P +E  +LEYLM N G+ + + Q+ 
Sbjct: 123 EVEAPDDDGLVLQEDRVMMDVERHIVTVDGQKVPMPLKEFDLLEYLMRNSGRVLTRGQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
             ++G  D   +   ++ HI +LR K+        +  + R LGY  +
Sbjct: 183 DRVWGA-DYVGDTKTLDVHIKRLRSKIERNPSRPEILVTVRGLGYKFE 229


>gi|303239890|ref|ZP_07326413.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592600|gb|EFL62325.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 236

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 108/228 (47%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       ++G  ++ F+S E       + + D+  ++  L   G   
Sbjct: 5   LIYVVEDEKHIQELIGFNLKENGYDVKCFDSGETMLSECQNMKPDLFLLDIMLP--GIDG 62

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R I+  S   ++P+I ++        +   + G +D + KP   RE++AR+  I+R
Sbjct: 63  LEVCRRIKESSSLKKIPIIMLTAKNDEFDKVLGLELGAEDYITKPFSVRELIARIKVIFR 122

Query: 118 R----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R    ++ +  + + G I +     +   + ++  +  +E  +L+ L+ N+G  +++  +
Sbjct: 123 RQADSVETNPEKIKVGKITIDVARHEVYKEKQLIEMTYKEFELLKLLILNKGIVLSRELL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              I+G FD   E   V+ HI  LR+K+ +       +++ R +GY  
Sbjct: 183 LEKIWG-FDYYGETRTVDVHIRYLRQKIEDDDNSPVYIETVRGVGYRF 229


>gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 237

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +  +            GP+ +  D    + +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 TATQEEEESETNEIVVGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 230


>gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 238

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++  G       D   ++     E       + + D+  ++  L       L 
Sbjct: 15  LVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLP--KLDGLS 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR  S VP+I ++        +   D G DD + KP +  E+ AR+ AI RR    
Sbjct: 73  VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSI 132

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +N  + G +++  D R   +  +   L  +E  +LE L  N GK  ++  +  A
Sbjct: 133 TQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLKA 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           ++G  D   +   V+ H+ +LR+K+  N      V +K  +GY  + 
Sbjct: 193 VWGQ-DYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238


>gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 238

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 96/233 (41%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E     E      SS    +  ++  L   G   +
Sbjct: 8   ILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLP--GMDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R     P++ ++        +  F+ G DD V KP   RE++ RV AI RR   
Sbjct: 66  EVCTRLRQVKSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         +N      + +  D       G    L  +E  +L YL ++  K  ++ +
Sbjct: 126 TAYLSKETNPSNSIVFPHLVIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD---PVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL NK+  D    + +   +GY ++ 
Sbjct: 186 LLKDVWN-YEFFGDLRTVDTHVKRLREKL-NKVSSDSAAMITTVWGVGYKLEV 236


>gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 226

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 5   LVVEDEEFFSDALSYMLRKEGFEV--AIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G S       E    +      D+  ++  L        
Sbjct: 4   ILIVDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKMAQEKNPDLILLDVMLP--KMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + RI+R     P++ ++        +   + G DD V KP   RE++ARV A  RR  +
Sbjct: 62  TVLRILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 121

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           SN     N      + +       E  G+   L  RE  +L++L+ANRG   ++  +   
Sbjct: 122 SNGETMSNVLSVNSLNIDLSKYRVEKNGKPIELTSREFDLLKFLVANRGLIFSREMLLEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 182 VWG-YEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYF 225


>gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 235

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVEEIKPDIILLDIMLPNK--DGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQIA 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  +N  E G + ++ D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 123 TPQTEEESESNDIEIGSLVIYPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 229


>gi|229028889|ref|ZP_04184990.1| Response regulator [Bacillus cereus AH1271]
 gi|228732460|gb|EEL83341.1| Response regulator [Bacillus cereus AH1271]
          Length = 234

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEKNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRKKTDCPIFFLTAKTSDLDKISGFSQGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQAVPNEQKAHSSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|218896157|ref|YP_002444568.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218545429|gb|ACK97823.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 234

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQAVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8]
 gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8]
          Length = 247

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + + EE L+ +  EDV      ++  G    
Sbjct: 14  ILVVDDDPAILELVGYNLSKEGYEV--LKAYDGEEALKIANDEDVDMFIVDIMLPGIDGF 71

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IR    +   P+I +S        +   + G DD + KP   RE+LARV AI+RR
Sbjct: 72  ELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 131

Query: 119 LKVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           L  +    E          + +  +  + +V+G+   L   E  +L +L  N GK  ++ 
Sbjct: 132 LSTATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 191

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 192 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 240


>gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 226

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    E L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAIATT--GPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEITPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|229010510|ref|ZP_04167712.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229132011|ref|ZP_04260874.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229166052|ref|ZP_04293816.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617463|gb|EEK74524.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651411|gb|EEL07383.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228750708|gb|EEM00532.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++  I+R  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPILRQKTDCPIFFLTAKTSDVDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N + +       G   +     +  V G V     +  ++L +   N     +K +++
Sbjct: 124 KQNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230


>gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 230

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    +  +   D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALNMAKANSYDMILLDVMLP--KMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQAIREFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSPE 123

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +V ++  E G I++  D R   +      L  RE  +LE L+ N  K  ++  +   
Sbjct: 124 RAPQVQSSVIEKGDIKLDCDSRRLFINDNEINLTAREFELLEILIKNENKVYSRESLLKI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   V+ H+ +LR+K+  N      V +K  +GY  +
Sbjct: 184 VWGE-DYPGDVRTVDVHVRRLREKIEANPSEPKYVHTKWGVGYYYN 228


>gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI]
 gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 223

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQGEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 223


>gi|323701174|ref|ZP_08112849.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533776|gb|EGB23640.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 101/226 (44%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++         +G ++      +    +  S   D+  ++  +        
Sbjct: 4   ILIADDEERIRQLVRLYLEAEGFTVCEAEDGQQVLDIVKSQPIDLVLLDLMMPV--LDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + +++R   ++P++ ++        +   D G DD + KP   RE++ARV A+ RR   
Sbjct: 62  TVCKMLRRERKIPIVMLTAKGEENDRVLGLDLGADDYIVKPFSTRELVARVKAVLRRAEG 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K +++       ++    R+ E+ GEV  L  +E  +L  L  N G+  ++ Q+   
Sbjct: 122 IGEKHNSHILSYPGFKLNELTRELEMHGEVINLTTKEFELLAMLAKNPGRIFSRDQLLEM 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++G FD   +   V++HI++LR KL  +   D  + + R +GY  +
Sbjct: 182 VWG-FDYCGDSRTVDTHINRLRSKLERQPNQDEYIKTIRGVGYKFE 226


>gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 224

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 96/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G         +  +      + D+  ++  +        
Sbjct: 4   ILIVDDDLNICEVIKMYLENSGYETSLAYCAQEAQDQVKGFKPDLILLDIIMPET--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR   Q P+I ++        +   + G DD + KP   +E++ARV A+ RR  +
Sbjct: 62  EILKWIRREHQTPVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVLRRTII 121

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++   E      + +  D      + E   +P +E  ++ +L +N+ K   + Q+   ++
Sbjct: 122 TDKVKEKIIFQGLVIDMDSYTIYYKDEEMRMPPKEFELIYFLASNKNKVFTREQLLCEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V+ HI +LR+KL++      +++   +GY  + 
Sbjct: 182 G-YDYPGDSRTVDVHIKRLREKLQD-GENWQIETVWGVGYKFEV 223


>gi|297537697|ref|YP_003673466.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297257044|gb|ADI28889.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 230

 Score =  249 bits (636), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G +     S+E  + L      D+  ++  L   G   L
Sbjct: 5   ILVVEDEPAIQELLALNITQAGHNAMRALSVEIAQNLMRETIPDLILLDWMLP--GMNGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R++++      +P+I ++        +   + G DD V KP   RE+ AR+ A+ RR
Sbjct: 63  EFARLLKSDNLTKTIPIIMLTARGDEYDKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  E   +R+           +   L   E R+L + M N  +   ++Q+   
Sbjct: 123 RAPQMTDDPIEMAGLRLDPTTHRVTGNNKTIDLGPTEFRLLHFFMTNAERVHTRSQLLDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
           ++G     VE+  V+ HI +LR  L      D + + R  GY + + N
Sbjct: 183 VWGDR-VFVEDRTVDVHIRRLRNALSLSGHEDLIQTVRGAGYRLSEKN 229


>gi|317502263|ref|ZP_07960436.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089008|ref|ZP_08337915.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896378|gb|EFV18476.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330406460|gb|EGG85973.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 233

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +       E+ L +    + + I   L+  G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECF--DTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRAKSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N           E   + +          G    +P +E  +L  L ++  +   + Q
Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   I+G ++   +   V+ HI +LR+KL++   +    +   +GY  +
Sbjct: 185 LLDRIWG-YEYLGDTRTVDVHIKRLREKLKDHPQWKL-GTVWGIGYKFE 231


>gi|300113425|ref|YP_003760000.1| winged helix family two component transcriptional regulator
           [Nitrosococcus watsonii C-113]
 gi|299539362|gb|ADJ27679.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus watsonii C-113]
          Length = 231

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G   +     E      +  R D+  ++  L   G   +
Sbjct: 7   ILIVDDEAAIREMLGFALTQEGYHYQVAADGEQAWQQINEFRPDLILLDWMLP--GISGV 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++        P+I ++     +  +   + G DD + KP    E++AR+ A+ RR
Sbjct: 65  DLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPMELIARIKAVLRR 124

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S    E   +++  D     V G    +   E R+L + + +  +  ++ Q+   
Sbjct: 125 SAPLLSGEVIEVNGLKLDPDSHRLSVGGAPLEMGPTEFRLLHFFLTHLERVYSRGQLIDY 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L        + + R +GY  
Sbjct: 185 VWGN-NVYVEERTVDVHIRRLRKSLEPSGHDGLIQTVRGVGYRF 227


>gi|254387142|ref|ZP_05002413.1| response regulator [Streptomyces sp. Mg1]
 gi|194345958|gb|EDX26924.1| response regulator [Streptomyces sp. Mg1]
          Length = 223

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEV--AIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 233

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   N  +    L  S + ++  ++  L   G+   
Sbjct: 5   ILVVDDEQPIADILQFNLEKEGYQVVVANDGDTAIELAESEKPNLILLDIMLP--GKDGN 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR +V
Sbjct: 63  EVLREVRKTQNIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANLRREQV 122

Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +   +T      G + V  D      +GE   L  RE  +L YL  + G+ + +  +  
Sbjct: 123 PDETVKTTKDIVIGDLIVHPDAYVVSRKGEEIELTHREFELLHYLARHIGQVMTREHLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            ++G +D   +   V+  + +LR+K+         + ++R +GY +
Sbjct: 183 TVWG-YDYFGDVRTVDVTVRRLREKIEENPSNPLWIVTRRGVGYYL 227


>gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 225

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G ++   N           +  D+  ++  L   G   L
Sbjct: 6   ILVVEDEAKLAQFIELELKYEGYNITVVNDGLSGLTTARESNPDLILLDWMLP--GISGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R   S+VP+I ++    +   +   D+G DD + KP +  E+LARV A  RR K
Sbjct: 64  EICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNK 123

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N +  +   + +  + R+      +  L  +E  +LEYLM++  + +++ QI   ++G
Sbjct: 124 EENPDLLQFLDLSLNRNTREVFRGNRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL  +     + + R +GY +
Sbjct: 184 -YDFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223


>gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEV--AIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|219667712|ref|YP_002458147.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537972|gb|ACL19711.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 232

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  +L  F + +      +  + D++ ++  L        
Sbjct: 5   ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIAKEKLDLAILDVMLPDV--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 63  SICRQIREKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTK 122

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N+              + +  +  +  +  +   L   E  IL  L +NRG+ V+  ++
Sbjct: 123 YNSSEPNQEEHVIAFSGLVLDMNTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           F+ ++G        N V  HI  LR+K+++       + +   +GY I+
Sbjct: 183 FNEVWGDKYFTNSNNTVMVHIRHLREKMQDSTEHPKYIKTVWGVGYKIE 231


>gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1]
 gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1]
 gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 239

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLP--KMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +                   +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVTESSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 DQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLE 233


>gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAV--AATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEAAPVALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 223

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    E L    R     +   L+  G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEV--AIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 104/221 (47%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G ++    + +    +  + + D+  ++  +        
Sbjct: 6   ILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPE--MDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F+ G DD + KP    E++ARV A+ +R ++
Sbjct: 64  ELCRELRDYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 123

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++  + G + +     +  +  +   LP +E  +L  L +  GK   + ++   I+G 
Sbjct: 124 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 183 YDYDGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 223


>gi|153815453|ref|ZP_01968121.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
 gi|145847095|gb|EDK24013.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
          Length = 233

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +       E+ L +    + + I   L+  G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECF--DTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRAKSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N           E   + +          G    +P +E  +L  L ++  +   + Q
Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   I+G ++   +   V+ HI +LR+KL++   +    +   +GY  +
Sbjct: 185 LLDRIWG-YEYLGDTRTVDVHIKRLREKLKDHPHWKL-GTVWGIGYKFE 231


>gi|269138436|ref|YP_003295136.1| phosphate regulon transcriptional regulatory protein [Edwardsiella
           tarda EIB202]
 gi|267984096|gb|ACY83925.1| phosphate regulon transcriptional regulatory protein [Edwardsiella
           tarda EIB202]
 gi|304558462|gb|ADM41126.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda FL6-60]
          Length = 229

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D    +   +G       S +           D+  ++  L   G   +
Sbjct: 5   ILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + ++   A  ++P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             + +         Q +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMALEETINLQGLSLDPVSHRVTAQDDAVEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEGSGHDRMVQTVRGTGYRF 225


>gi|319440749|ref|ZP_07989905.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 240

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 108/234 (46%), Gaps = 20/234 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSARE----DVSAIEAFLI 54
           ++++D   + +    L   +G ++    +G ++L+     +S A      D+  ++  L 
Sbjct: 10  LIVEDEESLSEPLAFLLEREGFTVTTAADGPSALDRFAAAESGASPTGPVDIVLLDLMLP 69

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
             G    E+ R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A
Sbjct: 70  --GMSGTEVCRQLRSTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRA 127

Query: 115 IYRRLKVSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           + RR   + N  +       G + +  +     V GE   LP +E  +LEYL+ N G+ +
Sbjct: 128 VLRRGGEAENAEDATSVISGGRVTMDIERHVVTVAGEEVALPLKEFDLLEYLLRNAGRVL 187

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220
            + Q+   I+G  D   +   ++ H+ +LR K+       PV   + R LGY  
Sbjct: 188 TRAQLIDRIWG-SDYVGDTKTLDVHVKRLRGKIEEDPSS-PVQLLTVRGLGYKF 239


>gi|332140178|ref|YP_004425916.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550200|gb|AEA96918.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 229

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 102/228 (44%), Gaps = 18/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGKG 57
           ++++D A +++    +    G     FN +E E++  +  +      D+  ++  L   G
Sbjct: 6   LVVEDEAPIREMLKFVLEQSG-----FNIIEAEDYDIAQEKICEPYPDLILLDWMLP--G 58

Query: 58  EKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              ++L + ++ H     +P+I ++     +  +   D+G DD V KP   +E++AR+ A
Sbjct: 59  GSGVQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKA 118

Query: 115 IYRRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + RR+  ++N    E   +++           E   +   E ++L + M +  +  ++  
Sbjct: 119 VMRRVTPTSNEEPIEFNGLKLEPVSHRVMANEEPLDMGPTEFKLLHFFMTHPERVYSREL 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 179 LLDNVWGT-NVYVEDRTVDVHIRRLRKAISRHGHDAMIQTVRGAGYRF 225


>gi|85708491|ref|ZP_01039557.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
 gi|85690025|gb|EAQ30028.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
          Length = 229

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 109/225 (48%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +     F ++G ++      +    L S    D+  ++  +  +G   +
Sbjct: 6   LLLVEDDPALSELLEYRFQNEGYNVRCTGDGDEAMVLASEDVPDLIILDWMI--EGTSGI 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R     + VP+I ++   +    +   ++G DD + KP   RE+LARVAA+ RR
Sbjct: 64  EVCRRLRRDKETAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++   +    E G I++       + +G    L   E R+L++ M + G+  ++ Q+   
Sbjct: 124 IRPALAGETIEVGDIKLDPVAHKVQRRGRALQLGPTEYRLLKFFMESPGRVFSRGQLLDG 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G     +E   V+ HI +LRK +  +   DP+ + R  GY+++
Sbjct: 184 VWGTG-SDIELRTVDVHIRRLRKAIGLEGAKDPIRTVRSAGYALE 227


>gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L]
 gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L]
 gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 223


>gi|228913968|ref|ZP_04077592.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926429|ref|ZP_04089501.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932679|ref|ZP_04095553.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944997|ref|ZP_04107358.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229090352|ref|ZP_04221595.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229120938|ref|ZP_04250180.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229172038|ref|ZP_04299603.1| Two-component response regulator [Bacillus cereus MM3]
 gi|229183591|ref|ZP_04310814.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228599834|gb|EEK57431.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228611381|gb|EEK68638.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228662598|gb|EEL18196.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228692935|gb|EEL46653.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228814666|gb|EEM60926.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826997|gb|EEM72757.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833253|gb|EEM78818.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845690|gb|EEM90717.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 218

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|84684965|ref|ZP_01012865.1| Phosphate regulon transcriptional regulator, PhoR [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667300|gb|EAQ13770.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacterales
           bacterium HTCC2654]
          Length = 229

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D    ++        +G  +    + +    L      D+  ++  L   G   
Sbjct: 7   LVLLVEDEPAQREILRYNLASEGYDVSIAENGDDAMVLVEEIGPDLILLDWMLP--GVSG 64

Query: 61  LELPRI---IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R     R  + +P+I +S        +   ++G DD + KP   +E++AR+    R
Sbjct: 65  IEICRRVKSRRETTDIPVIMLSARSDEMDRVRGLETGADDYMVKPFSVQELMARIRTQLR 124

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R + ++   +     I +  +       G+   L   E R+L   M   G+  ++ Q+  
Sbjct: 125 RTRPASVGQQLAYEDIILDGETHRVTRGGDPIKLGPTEFRLLTTFMEKPGRVWSREQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ H+ +LRK L    G DP+ + R  GY++
Sbjct: 185 RVWGR-DVYVDTRTVDVHVGRLRKALCKTGGDDPLRTVRGTGYAL 228


>gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055]
 gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger
           B]
 gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Vollum]
 gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Australia 94]
 gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus
           anthracis CI]
 gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 239

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLP--KMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +                   +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVTETSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 DQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLE 233


>gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    +   +G  +    + +    L    R     +   L+  G    
Sbjct: 4   LLVVEDEESFSDALSFMLEREGFDVAV--AADGLAALTEFERHGADLVLLDLMLPGLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRALRQRSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRGE 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + R     E GP+R+  +     V G   PLP +E  +LE  + N G+ + + Q+   +
Sbjct: 122 IDERVTATLEAGPVRMDVERHVVTVAGASVPLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  + G    + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEGEPGNPRHLVTVRGLGYKFE 225


>gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +          A  D+  ++  L  K     E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVAATGNEALKEYEKAGADIVLLDLMLPEK--SGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD + KP   RE++AR+ A+ RR    
Sbjct: 63  VCRELRTTSNVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVLRRNAEP 122

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      E+GP+R+  D     V G   PLP +E  +LE  + N G+ + + Q+   ++
Sbjct: 123 TDPMVTVLESGPVRMDVDRHVVSVGGAEIPLPLKEFELLEMFLRNSGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  + G    + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRSKIETEPGRPRHLVTVRGLGYKFE 225


>gi|167759417|ref|ZP_02431544.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
 gi|167662974|gb|EDS07104.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L      D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKLAKENAYDMILLDIMLPKH--DGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIREFSDVPIVMLTARGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSKR 123

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++     G +++  + R   +  +   L  +E  +LE L  N  K  ++  + + 
Sbjct: 124 DKAQPNDKIIIKGDMKIDCESRRVFIGEKEINLTAKEFDLLELLAMNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYF 227


>gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 224

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G ++E  +       +      D+  ++  L   G   L
Sbjct: 4   ILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQPPDLVVLDLMLP--GIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA S VP+I ++   ++   +   ++G DD + KP    E+LAR+    RR + 
Sbjct: 62  EVARRLRAASDVPIIMLTARDAIPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQR 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       GP+ +     +  +      L  +E  +LE  M +  + + +  I+  ++G
Sbjct: 122 EDAATVLRYGPLTMDLAAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVLTRDVIYDRVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   E N++E ++  LR+KL        + + R +GY +
Sbjct: 182 -YNFGGESNIIEVYVRYLRQKLEAHGEPRLIHTVRGVGYIL 221


>gi|302380543|ref|ZP_07269008.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233958|ref|ZP_07320607.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302311486|gb|EFK93502.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302494883|gb|EFL54640.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 222

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 10/224 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I    ++G    GF      +    S+  D+  ++  L   G+  
Sbjct: 1   MICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLP--GKSG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ + IR       +P++ ++   +    +   DSG DD + KP    E+LARV A+ R
Sbjct: 59  LEILKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLR 118

Query: 118 RLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R  +S  +++     I +  D R   V GE   L  +E  +L YL++N GK + +  I +
Sbjct: 119 RSSLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMT 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+G FD   E   V+ HI+ LR+KL+N      + + R LGY 
Sbjct: 179 KIWG-FDFEGESRTVDVHIATLRQKLKNA--SSIIKTIRNLGYK 219


>gi|228964356|ref|ZP_04125473.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795340|gb|EEM42830.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 218

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
 gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
          Length = 238

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G  +E   + + +E L+ +     + I   L+      +
Sbjct: 5   ILVIEDEFSIATLLKYNLEQAGYVVE--TAADGQEGLEKAIDLQPNLILLDLMLPKLDGM 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR      P+I ++        +   + G DD + KP   RE+LARV A+ RR  
Sbjct: 63  EVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFT 122

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           E G +RV+ +  +  +Q E      +E  +L YL+ N+ + + +
Sbjct: 123 QNVVADDKDVAQEKMYEFGQLRVYPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY  +
Sbjct: 183 DQLLSAVW-KYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFE 233


>gi|75906838|ref|YP_321134.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700563|gb|ABA20239.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 228

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +   +       L   +  D++ ++  L   G   L
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLP--GLSGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA    +P+I ++    +   +   D+G DD V KP    E+LAR+ A  RR +
Sbjct: 63  EICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQ 122

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++    +   + +    R+         L  +E  +LEYL+++  +   + QI   ++G
Sbjct: 123 ETDEDLLQFEDLSLNRRTREVFRGNRAIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL        + + R +GY++
Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEEHNEKRLIHTVRGVGYAL 222


>gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    E L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEV--AIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|225027575|ref|ZP_03716767.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
 gi|224955091|gb|EEG36300.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
          Length = 229

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++     E    +      D+  ++  L        E
Sbjct: 6   LVVDDERLIVKGIKFSLVQDDMEVDCAYDGEEALEMAKKTEYDIVLLDVMLP--KMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQRIREFSNMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSSKR 123

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E   +++  D R   V+ +   L  +E  +LE L  +  K  ++  + + 
Sbjct: 124 ATEDEKKKIFEKNGLKIDCDSRRVFVEDKEVKLTAKEYDLLELLSFHPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           ++G +D   +   V+ HI +LR+K+    G    + +K  +GY  
Sbjct: 184 VWG-YDYPGDVRTVDVHIRRLREKIEKNPGEPLYIHTKWGVGYYF 227


>gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 223


>gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D    L   +G  +    + +    L    R  +  +   L+  G    
Sbjct: 4   ILLVEDEESLADPLAFLLRKEGFDV--VIAGDGPSALVEFDRNAIDIVLLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  DVCKRLRAVSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGE 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ S+    +G I +  +     V GE   +P +E  +LEYLM N G+ + + Q+   +
Sbjct: 122 TIEESDEILGSGRIHMDVERHTVTVDGEEISMPLKEFDLLEYLMRNSGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +G  D   +   ++ HI +LR K+  +      V + R LGY  +
Sbjct: 182 WGA-DYVGDTKTLDVHIKRLRSKIEPEPSAPCHVITVRGLGYKYE 225


>gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13]
          Length = 233

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E         R D+  ++  L  +    +
Sbjct: 5   ILVVDDEKPIADILKFNLQKEGYEVYCAYDGEEAVNKVEEVRPDLILLDIMLPQR--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR + 
Sbjct: 63  EVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQ 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +    G + +  D      +G++  L  RE  +L YL  + G+ + +  +  
Sbjct: 123 KAADTEEPSEIAIGSLVIHPDAYMVTKRGDMIELTHREFELLHYLAKHIGQVMTREHLLQ 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 TVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 227


>gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAV--AATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRFLVTVRGLGYKFE 225


>gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
 gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
          Length = 230

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +      E    + +    D+  ++  L       +E
Sbjct: 6   LVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERAPDLVILDWMLPKV--SGIE 63

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R       VP+I ++        +   D+G DD V KP    E+ ARV A+ RR+
Sbjct: 64  VCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRI 123

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +++R   G I +       +  G+   L   E R+L+YLM + G+  ++ Q+  A+
Sbjct: 124 RPGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  VE   V+ HI +LRK L      DP+ + R  GYS+D
Sbjct: 184 WG-SDVYVEARTVDVHIGRLRKALNGTTDADPIRTVRSAGYSLD 226


>gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces venezuelae ATCC 10712]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAV--AATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVAGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
 gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
          Length = 238

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E     E      SS    +  ++  L   G   +
Sbjct: 8   ILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLP--GMDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R     P++ ++        +  F+ G DD V KP   RE++ RV AI RR   
Sbjct: 66  EVCTRLRQVKSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         +N      + +  D       G    L  +E  +L YL ++  K  ++ +
Sbjct: 126 TAYLSKEPNPSNSIVFPHLIIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY ++ 
Sbjct: 186 LLKDVWN-YEFFGDLRTVDTHVKRLREKLNKVSAESAAMITTVWGVGYKLEV 236


>gi|148550428|ref|YP_001270530.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|167036353|ref|YP_001671584.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|325275137|ref|ZP_08141111.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|148514486|gb|ABQ81346.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166862841|gb|ABZ01249.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
 gi|313501293|gb|ADR62659.1| PhoB [Pseudomonas putida BIRD-1]
 gi|324099745|gb|EGB97617.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 229

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S++    E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 TGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|220927161|ref|YP_002502463.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
 gi|219951768|gb|ACL62160.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 234

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++     +  +        D+  ++  +   G   +
Sbjct: 5   ILIVEDEEPLTLLLRYNLEAEGFEVDAVARGDEADIRLREQIPDLVLLDWMVP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IRA  +    P+I ++        +    +G DD + KP    E+LARV A+ RR
Sbjct: 63  ELCRRIRARRETERLPIIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K ++  +    G I +         +G    L   E ++LE+LM + G+  ++ Q+   
Sbjct: 123 AKPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK +      DP+ + R  GYS D
Sbjct: 183 VWG-HDVYIDERTVDVHIGRLRKAINRPRRPDPIRTVRGSGYSFD 226


>gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAVATT--GPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVGGTKIDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKVEPDPGAPRYLVTVRGLGYKFE 225


>gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 223

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEVQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 223


>gi|228938339|ref|ZP_04100951.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228971217|ref|ZP_04131847.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228977826|ref|ZP_04138209.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228781888|gb|EEM30083.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228788496|gb|EEM36445.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228821328|gb|EEM67341.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326938847|gb|AEA14743.1| two-component response regulator yvrH [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 234

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLIKQNNYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G +     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231


>gi|254245751|ref|ZP_04939072.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124870527|gb|EAY62243.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 235

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 7   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLP--GKSGI 64

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 65  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+          G+       L   E R+L + M +  +  ++TQ
Sbjct: 125 RAPQLTEDVVSINGLRLDPATHRVAAHGDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|229043138|ref|ZP_04190863.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229144003|ref|ZP_04272419.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228639400|gb|EEK95814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228726197|gb|EEL77429.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 218

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|226946855|ref|YP_002801928.1| phosphate regulon response regulator PhoB [Azotobacter vinelandii
           DJ]
 gi|226721782|gb|ACO80953.1| phosphate regulon response regulator; PhoB [Azotobacter vinelandii
           DJ]
          Length = 229

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    R D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAIIVDRRPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     + +PLI ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTTGIPLIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +N    E G +R+        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 TAPGDNETPIEVGGLRLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 223


>gi|328544892|ref|YP_004305001.1| phosphate regulon transcriptional regulatory protein [polymorphum
           gilvum SL003B-26A1]
 gi|326414634|gb|ADZ71697.1| Phosphate regulon transcriptional regulatory protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 231

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G ++E     +  E     ++ D+  ++  L   G   +E
Sbjct: 5   LIVEDEEPLSLLLRYNLEAEGYAVEACERGDEAEIRLRESQPDLLLLDWMLP--GLSGIE 62

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R +RA ++    P+I ++        +    +G DD V KP    E++ARV AI RR 
Sbjct: 63  LCRRLRARAETERLPVIMLTARGEEAERIRGLATGADDYVVKPFSVPELMARVRAILRRA 122

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +    +G I +  +       G+   L   E R+LE+LM + G+  ++ Q+   +
Sbjct: 123 RPEVVSTMLRSGDIELDRETHRVRRGGKEIHLGPTEFRLLEFLMTSPGRVFSREQLLDGV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  V+E  V+ H+ +LRK +      DP+ + R  GY+ +
Sbjct: 183 WG-HDVYVDERTVDVHVGRLRKAINRGKVKDPIRTVRGAGYAFN 225


>gi|154244160|ref|YP_001415118.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158245|gb|ABS65461.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 233

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  E     +  D+  ++  L   G   +
Sbjct: 5   ILIVEDEEPLTLLLRYNLESEGYGVESVGRGDEAETRLRESVPDLVILDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +    +G DD V KP    E+LARV A+ RR
Sbjct: 63  ELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K  +       G I +  +       G    L   E R+LE+LM + G+  ++ Q+   
Sbjct: 123 AKPEHVATLLRAGDIELDRETHRVHRAGREVHLGPTEFRLLEFLMQSPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS +
Sbjct: 183 VWGQ-DVYIDERTVDVHVGRLRKAINRGRQSDPIRTVRGAGYSFN 226


>gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 228

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    +   +G  +      +    L    R     I   L+  G    
Sbjct: 6   LLVVEDEESFSDALSFMLEREGFEVAV--VGDGPSALAEFDRHGADLILLDLMLPGLSGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 64  EVCRTLRARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 123

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +VS+   E G +R+  +     V G    LP +E  +LE  + N G+ + + Q+   +
Sbjct: 124 TEEVSDATLEVGRVRMDVERHVVTVDGSQVALPLKEFELLEMFLRNAGRVLTRGQLIDRV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  + G    + + R LGY  +
Sbjct: 184 WG-SDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGYKFE 227


>gi|227872060|ref|ZP_03990437.1| response regulator [Oribacterium sinus F0268]
 gi|227842091|gb|EEJ52344.1| response regulator [Oribacterium sinus F0268]
          Length = 233

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG  +  F +   EE LQ  ++E++  +   ++  G   L
Sbjct: 6   ILVVDDEKEIAELVEIYLVSDGYKV--FKAYNAEEGLQILSQEEIHLVLLDVMMPGMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P+I +S        +     G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCRKIRESSNIPVIMLSAKSEDLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYTQ 123

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     NN      + +  D     +  E   L   E  IL  L ++ GK  +  +
Sbjct: 124 LNPNAGPNYVNNEIHIRNMLINKDNHKVLIDDEDIKLTPIEFDILFLLASHPGKVFSTDE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           IF  ++         N V  HI +LR K+  ++     + +   +GY I+
Sbjct: 184 IFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDQREDKIITTVWGVGYKIE 232


>gi|170719341|ref|YP_001747029.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169757344|gb|ACA70660.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 229

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S++    E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 226

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEV--AIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVAGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 239

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLP--KMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +               +   +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVSESPDEESIKIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 DQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLE 233


>gi|84501127|ref|ZP_00999362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola batsensis HTCC2597]
 gi|84391194|gb|EAQ03612.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola batsensis HTCC2597]
          Length = 228

 Score =  248 bits (635), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        +G  +      E    L   A  D+  ++  L       +E
Sbjct: 8   LVVEDEPAQREVLAYNLEAEGFRVNRAADGEEALMLVDEAAPDIIVLDWMLPSV--SGIE 65

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++  ++   VP+I +S        +   ++G DD V KP    E++ARV A  RR 
Sbjct: 66  VCRQLKMRTETRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRAQLRRT 125

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S    R E   I + S+      +G+V  L   E R+L   M   G+  ++ Q+   +
Sbjct: 126 RPSTVGERLEYEGIVLDSETHRVTREGQVLKLGPTEFRLLTTFMEKPGRVWSREQLLDRV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 186 WGR-DIYVDTRTVDVHIGRLRKALCQFGGDDPLRTVRGAGYAL 227


>gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +               +  D+  ++  L   G   L
Sbjct: 5   ILVVEDEGKLAQFIELELKYEGYQVTVAPDGLSGLTTARESNPDLILLDWMLP--GISGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP+I ++    +   +   D+G DD + KP    E+LARV A  RR  
Sbjct: 63  EICKRLRQTGNKVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANLRRTS 122

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N +  +   +R+    R+      +  L  +E  +LEYLM++  + + + QI   ++G
Sbjct: 123 ENNADEVQFMDLRLNRSSREVYRANRLIELTAKEFDLLEYLMSHPRQVLTREQILERVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL N      + + R +GY +
Sbjct: 183 -YDFMGDSNIIEVYVRYLRLKLENNQEKRLIQTVRGIGYVL 222


>gi|254490292|ref|ZP_05103481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxidans DMS010]
 gi|224464425|gb|EEF80685.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxydans DMS010]
          Length = 230

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++D         G   +     E         + D+  ++  L   G   +E
Sbjct: 6   LVVEDDVAIRDMLSFTLKQAGFGCDSVGDGEAGLDFLKKQQPDMILLDWMLP--GIDGIE 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             R +RA+   + +P+I ++     +  +     G DD VNKP    E++AR+ A+ RR 
Sbjct: 64  FIRRLRANEFLANIPVIMLTAKGESEDMVKGLAVGADDYVNKPFSPPELMARIRAVLRRC 123

Query: 120 KVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  ++    + ++G + + +      V      L   E R+L + M N  +   ++Q+  
Sbjct: 124 QPDSSDEGQQLQSGNLVLDTKSHRVTVDDTRIELGPTEFRLLHFFMKNPERAYNRSQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G     +EE  V+ HI +LRK L +      + + R +GY  
Sbjct: 184 YVWGDT-VYIEERTVDVHIRRLRKALESSGHDHLIQTVRGVGYRF 227


>gi|205372167|ref|ZP_03224982.1| two component transcriptional regulator [Bacillus coahuilensis
           m4-4]
          Length = 225

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +G ++   N  E    + S     +  I+  +  K     
Sbjct: 4   ILVADDDQFIRELITLYLKKEGYTVFEANDGEEASSILSQQTIHLCLIDVMMPNK--NGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR    +P++ ++     +  +  F  G DD ++KP    E++ RV A+ RR K+
Sbjct: 62  ELCREIRDLYDLPILMVTAKGESEDKIKGFQQGTDDYISKPFDPHELIMRVKALLRRYKI 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ +     + + +   +  +  E    P +E ++L  L ++ G+  ++ Q+   I+G 
Sbjct: 122 NTHEKVTIANVVIDAKSVEVTIDQEPIAFPLKEFQLLHKLASHPGQVFSREQLIEEIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D    +  V+SHI K+RKKL  +  FD + + R LGY ++ +
Sbjct: 181 SDFDGFDRTVDSHIKKIRKKLSQQTAFD-IVTIRGLGYRLEVS 222


>gi|239624688|ref|ZP_04667719.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521074|gb|EEQ60940.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 234

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +  F +      L+  A+ED+  +   ++  G   L
Sbjct: 6   ILVVDDEKEIADLIEIYLVSDGYKV--FKAENAARGLEILAKEDIHLVLLDIMMPGMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR ++ +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCKKIRENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSHLRRYTQ 123

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     +NN      + +  D     V  E   L   E  IL  L +N GK  +  
Sbjct: 124 LNPNSASQDKANNEITIKGMIINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGKVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +IF  ++         N V  HI +LR K++        + +   +GY I+
Sbjct: 184 EIFERVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIE 233


>gi|315652944|ref|ZP_07905910.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315484802|gb|EFU75218.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 235

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 93/231 (40%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     E         + ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLMKECYETKIVGDGESALNDFDEFKPNLVLLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  QVCREIRAKSGTPVIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRYNS 124

Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           S              E   + V          G+   +P +E  +L +L ++  +   + 
Sbjct: 125 STITVPELHNGGEYVEYPDLVVNMTNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           Q+   I+G ++   +   V+ HI +LR+K+ +   F  + +   +GY  + 
Sbjct: 185 QLLDNIWG-YEYIGDTRTVDVHIKRLREKIHDN-QFWSISTVWGIGYKFEV 233


>gi|21693597|gb|AAM75361.1|AF521648_1 PhoB [Pseudomonas syringae]
          Length = 230

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G      ++ +    +    + D+  ++  L G G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEADNAQDAHAIIVDRKPDLILLDWMLPG-GTSGI 64

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     S +P+I ++        +   + GVDD + KP   RE++AR+ A+ RR
Sbjct: 65  ELARRLKREELTSDIPIIMLTAKGEEDNKIQGLEVGVDDYITKPFSPRELVARLKAVLRR 124

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++    E G + +        + G    +   E R+L++ M ++ +   + Q+   
Sbjct: 125 AGPADSESPIEIGGLLLDPISHRVTIDGTPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 185 VWGG-NVYVEERTVDVHIRRLRKALGEAYE-NMVQTVRGTGYRF 226


>gi|318058513|ref|ZP_07977236.1| two-component system response regulator [Streptomyces sp. SA3_actG]
          Length = 257

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++             + R D+  ++  L   G   LE
Sbjct: 20  LVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLP--GMDGLE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R    VP+I ++        +   + G DD V KP   RE++ RV ++ RR +  
Sbjct: 78  VCRRMRERHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRPD 137

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +    G + +    R     G    L  RE  +L + + + G+  ++ ++   ++G 
Sbjct: 138 PAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWGW 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             E  + + V  HI +LR K+ +       + +   +GY  +
Sbjct: 198 --EFGDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE 237


>gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
          Length = 239

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLP--KMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +                   +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVKDTSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 DQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLE 233


>gi|228951779|ref|ZP_04113878.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229177806|ref|ZP_04305179.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228605597|gb|EEK63045.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228807901|gb|EEM54421.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 218

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 233

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G S++     +           +   ++  L        E
Sbjct: 7   LIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPE--MDGWE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +   IR    +S+VP+I ++        +     G DD V KP   RE++ARV A+ RR 
Sbjct: 65  VCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRD 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K  +   E G + V +      V+     LP +E  +L  L+ N  +   + +I   
Sbjct: 125 QDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           I+G F  A     V+ H+ ++RKKL  + GFD  + +   +GY  + 
Sbjct: 185 IWG-FSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEV 230


>gi|318058490|ref|ZP_07977213.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318075596|ref|ZP_07982928.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|333026125|ref|ZP_08454189.1| putative response regulator [Streptomyces sp. Tu6071]
 gi|332745977|gb|EGJ76418.1| putative response regulator [Streptomyces sp. Tu6071]
          Length = 223

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEV--AIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEVTPTALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPSAPRYLVTVRGLGYKFE 222


>gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 236

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G ++    + +  + L  + R+    +   ++        
Sbjct: 5   LIVEDETTLAETLRYNLEREGYAV--IIAGDGVQGLDRARRDQPDLVVLDIMLPRLDGFS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + RI+R  S VP+I ++        +   + G DD ++KP    E LARV AI RR +  
Sbjct: 63  VCRILRQESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAILRRSERQ 122

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E G IRV +  R     G+   LP++E  +L  LM NRG  + +  +   +
Sbjct: 123 PHSIVREVLEAGSIRVDASSRRAWRDGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   V+ HI  LR+K+  +      + + R +GY  +
Sbjct: 183 WGQ-DFIGDSRTVDVHIRWLREKIEPDPSKPTYIQTVRGVGYRFE 226


>gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 104/221 (47%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G ++    + +    +  + + D+  ++  +        
Sbjct: 4   ILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPE--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F+ G DD + KP    E++ARV A+ +R ++
Sbjct: 62  ELCRELRDYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++  + G + +     +  +  +   LP +E  +L  L +  GK   + ++   I+G 
Sbjct: 122 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 181 YDYDGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 221


>gi|77165864|ref|YP_344389.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrosococcus oceani ATCC 19707]
 gi|254434533|ref|ZP_05048041.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus oceani AFC27]
 gi|76884178|gb|ABA58859.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus oceani ATCC 19707]
 gi|207090866|gb|EDZ68137.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus oceani AFC27]
          Length = 229

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G   +     E      + +  D+  ++  L   G   +
Sbjct: 5   ILVVDDEAAIREMLGFALTQEGYYYQAAADGEQAWQRINESHPDLILLDWMLP--GISGV 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++        P+I ++     +  +   + G DD + KP    E++AR+ A+ RR
Sbjct: 63  DLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPTELIARIKAVLRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S    E   +++        V+G    +   E R+L + + +  +  ++ Q+   
Sbjct: 123 SAPLASGEVIEFDGLKLDPGSHRLSVRGTPLEMGPTEFRLLHFFLTHLERVYSRGQLIDY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L        + + R +GY  
Sbjct: 183 VWG-DNVYVEERTVDVHIRRLRKSLEPSGHDGFIQTVRGVGYRF 225


>gi|212634120|ref|YP_002310645.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212555604|gb|ACJ28058.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 229

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    + +    D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVLEQHGFTTTAAEDYDSALDMLTEPYPDLVLLDWMFP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + +R       +P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFITKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +  +   +++        V  +V  +   E R+L + M +  +  ++ Q+   
Sbjct: 123 AAPTCLEDPIDVQGLQLDPVSHRVTVGEQVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVTLSGHDRLIQTVRGAGYRF 225


>gi|260776661|ref|ZP_05885556.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607884|gb|EEX34149.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 229

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|260430664|ref|ZP_05784636.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418105|gb|EEX11363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 228

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++        +G ++    + +        A  D+  ++  L   G   +
Sbjct: 7   ILVVEDEPSQREIIRYNLEAEGFTVVQAENGDEALLQIKEAPPDLILLDWMLP--GVSGI 64

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++   A   +P+I +S        +   ++G DD V KP    E++ARV + +RR
Sbjct: 65  EICRQLKMTAATRAIPVIMLSARSDEVDKVRGLETGADDYVTKPYSVIELMARVKSQFRR 124

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +    R E   I + ++       G+   L   E R+L   M   G+   + Q+   
Sbjct: 125 TRPAAVGERLEYDDIVLDAETHRVTRAGQDIKLGPTEFRLLSTFMEKPGRVWNREQLLDR 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V+   V+ HI +LRK L  + G DP+ + R  GY++
Sbjct: 185 VWGR-DIYVDTRTVDVHIGRLRKALTVRGGDDPIRTVRGAGYAL 227


>gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 234

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +  F + + EE L+     +   I   L+      L
Sbjct: 4   ILVVDDEKPISDIVKFNLSKEGYEV--FTAYDGEEALEKVREVEPDLILLDLMLPKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKTFDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSS 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +N+    G + +  D        E   L  RE  +L YL  + G+ + +  +
Sbjct: 122 AAKEAEEQTNSELSIGDLTIHPDAYMVTKHNEAIELTHREFELLHYLAKHIGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLATRRGVGYYL 228


>gi|304406985|ref|ZP_07388639.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343972|gb|EFM09812.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 238

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 95/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E     E    + +    D+  ++  L   G   +
Sbjct: 8   ILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRMAAGKDYDLIMLDVMLP--GIDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R     P+I ++        +  F++G DD V KP   RE++ RV AI RR   
Sbjct: 66  EVCSRLRQVKATPVIMLTAKGEEMNRVQGFEAGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S+N      + +  D       G+   L  +E  +L YL  +  K  ++ +
Sbjct: 126 TAFLTKEANSSNNIVLPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY ++ 
Sbjct: 186 LLKDVWN-YEFFGDLRTVDTHVKRLREKLNKVSPEAASMITTVWGVGYKLEV 236


>gi|290474714|ref|YP_003467594.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289174027|emb|CBJ80814.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 229

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G         +   W  S    D+  ++  L   G   +
Sbjct: 5   ILVVEDEVQIREMVCLVLEQNGYQTVEAEDYDVAVWRLSEPYPDLVLLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + ++  S    +P++ ++     +  +   D G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLIKQMKRDSSTRDIPVMMVTARGEEEDRVRGLDVGADDYITKPFSPKELVARIKAVLRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    + +      + + S       QG+   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 VSPMSAEDIINMDGLILDSSSHRVSSQGQNVEMGPTEFKLLHFFMTHPERVYSREQLLNY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEVGGHDRMVQTVRGTGYRF 225


>gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601]
 gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601]
          Length = 237

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALQLVEEVQPDLILLDIMLP--GRDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N+  E G + +  D      +G+   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSQAAEDQENSELEVGSLTIHPDAYVVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231


>gi|167747978|ref|ZP_02420105.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662]
 gi|317472474|ref|ZP_07931796.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167652628|gb|EDR96757.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662]
 gi|316900047|gb|EFV22039.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 225

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 11/229 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M  +++D A +++  I      G    G+ S + F + L +    ++  ++  L   GE 
Sbjct: 1   MIYIVEDDANIRELVIYTLQSTGFDAGGYESGISFFKDLSAGKIPELVLLDIMLP--GED 58

Query: 60  VLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            + + R IR       +P+I ++   +    +   DSG DD + KP    E+++R+ A+ 
Sbjct: 59  GISILRKIRSNPETKHIPVIMMTAKGAEYDKVLGLDSGADDYITKPFGMMELVSRIKAVL 118

Query: 117 RRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR+K          G + +          GE   L  +E R+L  LM ++G  + + Q+ 
Sbjct: 119 RRVKKEEPTEELSAGNLYIHVGKHKVLADGEKVELTYKEFRLLCMLMESKGNVLTRDQLL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + I+G +D   E   V+ HI  LR+KL        +++ R +GY I  N
Sbjct: 179 TNIWG-YDFDGETRTVDVHIRTLRQKLGECGS--MIETVRGIGYRIGGN 224


>gi|109897378|ref|YP_660633.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|332307706|ref|YP_004435557.1| two component transcriptional regulator PhoB, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|109699659|gb|ABG39579.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
 gi|332175035|gb|AEE24289.1| two component transcriptional regulator PhoB, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 229

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A +++    +    G         +           D+  ++  L   G   ++
Sbjct: 6   LLVEDEAPIREMLKFVLEQSGYETIEAEDFDVALEKVVEPYPDLILLDWMLP--GGSGVQ 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + ++ H     +P+I ++     +  +   DSG DD V KP   +E++AR+ A+ RR+
Sbjct: 64  LAKRLKQHEFTRDIPIIMVTARGEEEDKVRGLDSGADDYVTKPFSPKELVARIKAVIRRV 123

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S+   E   +++           E   +   E ++L + M++  +  ++ Q+   +
Sbjct: 124 TPTSSDELIEFNGLKLDPVSHRATANDEPLDMGPTEFKLLHFFMSHSERVYSREQLLDNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAISRFGHDSMIQTVRGSGYRF 225


>gi|92116259|ref|YP_575988.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799153|gb|ABE61528.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 233

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLDAEGYEVETVARGDEADTWLKERTPDLVVLDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA  +    P+I ++        +    +G DD V KP    E+LARV  + RR
Sbjct: 63  ELCRRLRARPETRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKGLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G I +  D       G    L   E R+LE+ + + G+  ++ Q+  +
Sbjct: 123 ASPERLATILSFGDIELDRDKHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK +      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLINPGGEPDPIRTVRGAGYALD 226


>gi|226305111|ref|YP_002765069.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229490687|ref|ZP_04384525.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226184226|dbj|BAH32330.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229322507|gb|EEN88290.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 229

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G      N           +  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTIVNDGPSALAEFDRSGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKALRSRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVEN 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              L   N   E GP+R+  +    +V G    LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 EADLASDNGVLEAGPVRMDVERHVVQVAGNPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +    + + + R LGY ++
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIESDPAKPEHLVTVRGLGYKLE 228


>gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
 gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
          Length = 237

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 104/230 (45%), Gaps = 13/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +    + + EE L     ED   +   L+      +E
Sbjct: 6   LVVDDEQSIVTLLQYNLEQSGFEV--ITAFDGEEGLSKIFSEDPDIVVLDLMLPKMDGVE 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R   +QVP++ ++        +   + G DD + KP   RE+ AR+ AI RR + 
Sbjct: 64  VCKAVRSEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAILRRSQA 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    N     G +++  +  +    GE+  L  +E  +L YL+  +G+ + +  +
Sbjct: 124 LRQHESEKENKEIIIGKLKILPEHFEAYRNGELIDLTPKEFELLIYLIERQGRVITREHM 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
            ++++  ++ A +  +V+ HIS LR+K+  N      + + R LGY +D+
Sbjct: 184 LNSVWN-YEFAGDSRIVDVHISHLREKIEENPKQPQYIKTVRGLGYKLDY 232


>gi|160936855|ref|ZP_02084220.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440236|gb|EDP17982.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
           BAA-613]
          Length = 234

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 97/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +  F +    + L+  ++E+V  +   ++  G   L
Sbjct: 6   ILVVDDEKEIADLIEIYLVSDGYKV--FKAENAAKGLEIISKEEVHLVLLDIMMPGMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR ++ +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCKKIRENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   + +NN      + +  D     V  E   L   E  IL  L +N GK  +  
Sbjct: 124 LNPNSASKEKANNEITIKGMTINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGKVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +IF  ++         N V  HI +LR K++        + +   +GY I+
Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIE 233


>gi|121594708|ref|YP_986604.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120606788|gb|ABM42528.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 235

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G         E  +    +   DV  ++  L   G+  L+
Sbjct: 8   LIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWMLP--GQSGLQ 65

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  RA S   Q+P++ ++        +   D+G DD + KP   +E+LAR+ A+ RR 
Sbjct: 66  LARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + + +       QG+   +   E ++L YLM +  +  ++ Q+   I
Sbjct: 126 APEQVSDSVSIGELVLDAATHRVSYQGQQLKVGPTEFKLLHYLMKHPERVHSRAQLLDKI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L   +G   V++ R  GY +
Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALG--VGGAMVETVRGAGYRL 225


>gi|229101805|ref|ZP_04232520.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681598|gb|EEL35760.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 234

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L  +    
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLTEQNNYDLIILDVMLPEQ--SG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  +S   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|297588265|ref|ZP_06946908.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573638|gb|EFH92359.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 222

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 10/224 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I    ++G    GF      +    S+  D+  ++  L   G+  
Sbjct: 1   MICCVEDDKSIRELIIYALNNEGYEAMGFGDYNEFKSTLYSSSIDLIILDIMLP--GKSG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L++ + IR       +P++ ++   +    +   DSG DD + KP    E+LARV A+ R
Sbjct: 59  LDILKEIRNNEKTKSIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLR 118

Query: 118 RLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R  +S  +++     I +  D R   V GE   L  +E  +L YL++N GK + +  I +
Sbjct: 119 RSSLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMT 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+G FD   E   V+ HI+ LR+KL+N      + + R LGY 
Sbjct: 179 KIWG-FDFEGESRTVDVHIATLRQKLKNA--SSIIKTIRNLGYK 219


>gi|205372741|ref|ZP_03225551.1| hypothetical protein Bcoam_04690 [Bacillus coahuilensis m4-4]
          Length = 234

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR---EDVSAIEAFLIGKGE 58
            ++++D   V       F  +G     F +   E W    +     D   ++  L   G 
Sbjct: 3   ILVVEDNESVCSMIEMFFLKEGWEG-AFATDGKEGWALFESNPTGYDFILLDWMLP--GM 59

Query: 59  KVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             + L R IR     VP+I ++   S    +   + G DD V KP     ++AR+ A+ R
Sbjct: 60  DGITLCRKIRGVTKNVPVIMLTAKDSDSDQVLGLEMGADDYVTKPFSPLTLMARIKAVRR 119

Query: 118 RLKVSNNRA------ETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAK 170
           R +    +       E+   ++  + R+   Q      L  +E  +L Y + +  +   +
Sbjct: 120 RYEEIQPKGASLHYKESTYFKISKETREIFYQDTAIDGLTPKEFDLLYYFIHHPKQVFTR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            Q+   I+G ++   +E  V+ HI +LRKK+R       + +   +GY  D
Sbjct: 180 EQLLDRIWG-YEYYGDERTVDVHIKRLRKKIRTATHP-FIHTVWGVGYKFD 228


>gi|228984288|ref|ZP_04144469.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775405|gb|EEM23790.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 234

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  R+  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRKHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHASSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|138894462|ref|YP_001124915.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265975|gb|ABO66170.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
          Length = 226

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 104/221 (47%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G+++    + +    +  + + D+  ++  +        
Sbjct: 6   ILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPE--MDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R +  VP++ ++     +  +  F  G DD + KP    E++ARV A+ +R ++
Sbjct: 64  ELCRELRDYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 123

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++  + G + +     +  +     PLP +E  +L  L +  GK   + ++   I+G 
Sbjct: 124 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 183 YDYEGDERTVDVHIKRLRERFAQPNVPFFIRTIRGLGYRLE 223


>gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 226

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    +   +G  +                  D+  ++  L   G    
Sbjct: 4   LLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRRGADLILLDLMLP--GLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRTLRARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +VS+   E G +R+  +     V G    LP +E  +LE  + N G+ + + Q+   +
Sbjct: 122 TEEVSDTTLEVGRVRMDVERHVVTVDGNQVSLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  + G    + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGYKFE 225


>gi|317130194|ref|YP_004096476.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475142|gb|ADU31745.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 231

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D        +G ++   +  E         + D   ++  L        E
Sbjct: 8   LVIEDDPNICDLLKLYLEKEGYAVTIAHDGEKGLIDYYDHQPDFIVLDIMLP--KIDGWE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R IR    VP+I I+        +   + G DD V KP   +E+LAR+ A+ RR    
Sbjct: 66  VCREIRKDRNVPVIMITGKGESYDKIKGLELGADDYVVKPFDPKEVLARMKAVMRRTNPY 125

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N       +++         + +   LP +E  +L +L++++     + Q+   ++G
Sbjct: 126 FGTNEEIALFGLKINIREYTLLREEKEIVLPPKELELLFFLISHKNNVFTRQQLLDEVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   ++ HI ++R+K+    G   + + R +GY  + N
Sbjct: 186 -YDYEGDPRTIDVHIKRIREKIGEGSGEWSLKTIRGVGYKFEVN 228


>gi|329937264|ref|ZP_08286863.1| response regulator [Streptomyces griseoaurantiacus M045]
 gi|329303545|gb|EGG47431.1| response regulator [Streptomyces griseoaurantiacus M045]
          Length = 277

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +         G  ++            ++ R D+  ++  L   G   L
Sbjct: 22  ILVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPAALDRAAAHRPDLVVLDLMLP--GMDGL 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +  VP++ ++        +   + G DD V KP   RE++ RV ++ RR + 
Sbjct: 80  EVCRRLRENGPVPVVMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVQSVLRRARP 139

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +    R     G    L  RE  +L +L+A+  K   + ++   ++G
Sbjct: 140 GPGIRPLHAAGLVLDPAARRATKNGAELALTLREFDLLAFLLAHPRKVFGREELMREVWG 199

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
              +  + + V  H+ +LR K+ +       + +   +GY  +
Sbjct: 200 W--DFGDLSTVTVHVRRLRGKVEDDPARPLLIQTVWGVGYRFE 240


>gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
 gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
          Length = 230

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +        +G              L  S   D+  ++  L         
Sbjct: 6   LIVEDEANIAELLHLYLEKEGYETAVAPDGGKGVELFRSFHPDLVLLDIMLPV--MDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR   + P+I ++     +  +   + G DD + KP   +E+LAR+ A+ RR    
Sbjct: 64  VLKKIRESDKTPVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVLRRFGAE 123

Query: 123 NN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  +     + +  D  +  V G+    P +E  +L +L A+  +   + Q+   +
Sbjct: 124 EEGSGEKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLAASPNRVFTRNQLLDEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G FD   +   V+ HI +LR+KL        + +   +GY  + 
Sbjct: 184 WG-FDYFGDSRTVDVHIKRLREKLEGVSEQWSLKTVWGVGYKFEV 227


>gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 228

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  +  D+  ++  L G G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETVIAGDGPAALTEFDRSGADIVLLDLMLPGMGGN--D 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++   S    +   + G DD V KP   RE+ AR+ A+ RR + +
Sbjct: 63  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQEA 122

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++        E GPI++  D     V  +   LP +E  +LEYLM NRG+ + + Q+   
Sbjct: 123 DSETSAEGVLEAGPIKLDVDRHLVSVHSKHVTLPLKEFDLLEYLMRNRGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+ +     D + + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEDDPAKPDRLVTVRGLGYKLE 227


>gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis]
          Length = 283

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +  F + + EE L+     +   I   L+      L
Sbjct: 53  ILVVDDEKPISEIVKYNLVKEGYEV--FTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 110

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 111 EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 170

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + +    G + +  D      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 171 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 230

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 231 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYL 277


>gi|88811179|ref|ZP_01126435.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis
           Nb-231]
 gi|88791718|gb|EAR22829.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis
           Nb-231]
          Length = 228

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++           S+   +S E    L      D+  ++  L   G   +
Sbjct: 4   ILIVEDEAAIREMIAMALIRSDYSVHQADSGEAGLTLLDEIVPDLVLLDWMLP--GMSGI 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  R ++ H     VP+I ++     +  +   + G DD V KP   RE+LAR+ A+ RR
Sbjct: 62  DFARRVKRHPTYRDVPIIMLTARGEEEDKIRGLEVGADDFVTKPFSPRELLARIKAVLRR 121

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + R E   + +        +  +   +   E R+L + M +  +  ++ Q+   
Sbjct: 122 AAPLSGDERIEVKGLTLDPVAHRVWIGEDTLEIGPTEFRLLRFFMTHPERVFSRGQLLDH 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK +  +     + + R  GY  
Sbjct: 182 VWGT-NVYVEERTVDVHIRRLRKTIAGRGHDRLIQTVRGTGYRF 224


>gi|261252149|ref|ZP_05944722.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           orientalis CIP 102891]
 gi|260935540|gb|EEX91529.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           orientalis CIP 102891]
          Length = 229

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 231

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G ++   +              D+  ++  L        
Sbjct: 4   ILIVEDERTLAETLRYNLEREGYTVVVASDGVQGLEQARREPPDLIVLDIMLPR--LDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + RI+R  S VP+I ++        +   + G DD ++KP    E LAR+ AI RR + 
Sbjct: 62  SVCRILRQESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIMRRSER 121

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +E      G +RV +  R      +   LP++E  +L  L+ NRG  +++  +   
Sbjct: 122 QPRTSEREVLNAGALRVDTGSRRAWRDNQELTLPQKEFDLLTCLVRNRGIALSRDLLLER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++G  D   +   V+ HI  LR+K+         + + R +GY  +
Sbjct: 182 VWGP-DFIGDSRTVDVHIRWLREKIEPNPAQPCYIQTVRGVGYRFE 226


>gi|28872582|ref|NP_795201.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968546|ref|ZP_03396689.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato T1]
 gi|301383518|ref|ZP_07231936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato Max13]
 gi|302062568|ref|ZP_07254109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato K40]
 gi|302130235|ref|ZP_07256225.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28855837|gb|AAO58896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926834|gb|EEB60386.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato T1]
 gi|330878107|gb|EGH12256.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330967971|gb|EGH68231.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|331017829|gb|EGH97885.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 229

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++     E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGESPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|145298254|ref|YP_001141095.1| two-component system response regulator PhoB [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142851026|gb|ABO89347.1| two-component system response regulator PhoB [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 229

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G   E   + ++ + L          I    +  G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGY--ETIEAEDYADGLAKVCEPYPELIVLDWMMPGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++      Q+P++ ++     +  +   ++G DD + KP   +E+ AR+ A+ RR
Sbjct: 63  QFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  +   E   +++         +     +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 VSPTSVDEVIEVQGLKLDPVSHRVSAEERALDMGPTEFKLLHFFMTHPERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEETGHDRLIQTVRGAGYRF 225


>gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 232

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G S+                + D+  ++  L         
Sbjct: 5   LIVEDETTLAETLRYNLEREGYSVIVAGDGVQGLDRARRDQPDLVVLDIMLPR--LDGFS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + RI+R  S VP+I ++        +   + G DD + KP    E LARV AI RR +  
Sbjct: 63  VCRILRQESDVPIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAILRRSERQ 122

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E G IRV +  R     G+   LP++E  +L  LM NRG  + +  +   +
Sbjct: 123 PHSIVREVLEAGAIRVDTSSRRAWRNGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +G  D   +   V+ HI  LR+K+    G    + + R +GY  +
Sbjct: 183 WGQ-DFIGDSRTVDVHIRWLREKIEPDPGKPVYIQTVRGVGYRFE 226


>gi|238026792|ref|YP_002911023.1| response regulator [Burkholderia glumae BGR1]
 gi|237875986|gb|ACR28319.1| Response regulator [Burkholderia glumae BGR1]
          Length = 235

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 7   ILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLP--GKSGI 64

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 65  AFARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+           E       L   E R+L + M +  +  ++TQ
Sbjct: 125 RAPQLTEDVVSINGLRLDPATHRVAASAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 235

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 105/234 (44%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G   E   + +    L+  A  D+  +   L+  G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGF--EPIIAHDGPTALEKFAANDIDIVLLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCKQLRTTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHD 121

Query: 119 ----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                      +V+    E G +++  +     V GE   +P +E  +LEYL+ N G+ +
Sbjct: 122 SGAGADTEAEEEVTEQLLEGGRVKMDVERHTVTVAGEPVSMPLKEFDLLEYLLRNAGRVL 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            + Q+   I+G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 TRGQLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEQPSRPKHLVTVRGLGYKFE 234


>gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens
           LL3]
          Length = 236

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L  K    +
Sbjct: 6   ILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNK--DGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 64  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + ++N    G + +F D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 124 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230


>gi|311743633|ref|ZP_07717439.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312763|gb|EFQ82674.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 221

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 4/217 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +    +   +G++     S +       S R D+  ++  L   G   + 
Sbjct: 2   LVVDDDASLAEMLSIVLEAEGLTAAVCRSGDKVMTAFESFRPDLVLLDLMLP--GMDGMS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP+I ++        +   D+G DD + KP  + E++AR+ A  RR    
Sbjct: 60  VCRQIRATSSVPIIMLTAKSDTPDVVAGLDAGADDYLTKPFKNVELVARIKARLRRTDQL 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G I +   G     +GE   L   E  +L  L+A   +   +  +   ++G + 
Sbjct: 120 GEPLVFGDIVLDPVGHTVTRKGEPLELTPLEFDLLACLLATPEQVFTREVLLQKVWG-YH 178

Query: 183 EAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
              +  +V  H+++LR K+ +       + + R +GY
Sbjct: 179 HPGDTKLVNVHMTRLRSKIEDDADNPSVIRTVRGVGY 215


>gi|295402148|ref|ZP_06812107.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312112732|ref|YP_003991048.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975831|gb|EFG51450.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311217833|gb|ADP76437.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 235

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIILTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRRHSQ 122

Query: 122 S--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         N    G + +  D      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 TVAQEGTNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 229


>gi|146338745|ref|YP_001203793.1| two-component regulatory system response regulator [Bradyrhizobium
           sp. ORS278]
 gi|146191551|emb|CAL75556.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Bradyrhizobium sp. ORS278]
          Length = 235

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLEAEGYEVETVARGDEADTRLKERIPDLVVLDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA S+    P+I ++        +    +G DD + KP    E+LARV  + RR
Sbjct: 63  ELCRRLRARSETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G I +  + R     G    L   E R+LE+ + + G+  ++ Q+  +
Sbjct: 123 ASPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|70733391|ref|YP_263166.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens Pf-5]
 gi|330806802|ref|YP_004351264.1| phosphate regulon response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|68347690|gb|AAY95296.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens Pf-5]
 gi|327374910|gb|AEA66260.1| Phosphate regulon response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 229

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCMEAENSQQAHAIIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++     E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
 gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
          Length = 233

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D + + +        +G   +   +  +  E+ +S  +  +  ++  L        
Sbjct: 6   LIVEDDSNIAELLHLYLEKEGFETKVAKDGGKGVEYFRSF-QPALVLLDIMLPV--MDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + + IR  S  P+I ++     +  +   +SG DD + KP   +E+LAR+ A+ RR   
Sbjct: 63  TVLKKIREESATPVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVMRRTGQ 122

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  N +     + +  D  +  V G+    P +E  +L +L +   +   + Q+   +
Sbjct: 123 EEEQENKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLASAPNRVFTRNQLLDEV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G FD   +   V+ HI +LR+KL        + +   +GY  + 
Sbjct: 183 WG-FDYFGDSRTVDVHIKRLREKLEGVSDQWRLKTVWGVGYKFEV 226


>gi|228996291|ref|ZP_04155936.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003958|ref|ZP_04161764.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757327|gb|EEM06566.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763483|gb|EEM12385.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 234

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E         R D+  ++  L   G+   
Sbjct: 7   LLVDDETAILQLLTTILQKEGFSHITTATSAEEALQFVEQNRYDLMILDVMLP--GQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR   
Sbjct: 65  DICPIIRQKTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +          G  +V     + +V G++     +  ++L +   +     +K +I+
Sbjct: 125 QTTQPMKETHFISFGRFQVDKHAAELQVDGKIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPEYIKTVRGLGYKF 231


>gi|119510886|ref|ZP_01630010.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119464495|gb|EAW45408.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 250

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 102/232 (43%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSARE------DVSAIEAFLI 54
            ++++D  L+++       ++G  +    +     E+L+S          D+  ++  L 
Sbjct: 21  ILVVEDEELIQEMLAVALEEEGFGVITAPDGRSAVEYLKSCEPNSGEPPFDLIILDLMLP 80

Query: 55  GKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++R   + VP++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  H--INGLDICRLLRHQGNPVPILILSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR ++S+       +   + +        V+ +   L  +E R+LE  M+   +  +
Sbjct: 139 ALLRRQRLSSLPQLQVLKHKNVTLNPQECRVLVRDQEVSLSPKEFRLLELFMSYARRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  +   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLLDQVWGP-EFVGDSKTVDVHIRWLREKLEEDPSHPEYIVTVRGFGYRF 249


>gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           TA208]
          Length = 235

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L  K    +
Sbjct: 5   ILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNK--DGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + ++N    G + +F D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 123 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 229


>gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 239

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLP--KMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +                   +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVKEASDEESITLAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 DQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLE 233


>gi|167465147|ref|ZP_02330236.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381788|ref|ZP_08055742.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154176|gb|EFX46498.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 237

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E     E    L      D+  ++  L   G    
Sbjct: 7   ILVVDDEERIRRLLRMYLEKEGYDIEESQDGETALKLAMDKDYDLILLDIMLP--GMDGT 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R     P+I ++        +  F+ G DD V KP   RE++ RV AI RR   
Sbjct: 65  EVCARLRQFKTTPVIMLTAKGEETNRVHGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 124

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S+N      + +  D       G+   L  +E  +L YL  +  K  ++ +
Sbjct: 125 TAFLSKDSNSSNNIVFPHLVIEHDAHRVTAGGQEVALTPKEYELLHYLAVSPDKVFSREE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY ++ 
Sbjct: 185 LLKDVWN-YEFFGDLRTVDTHVKRLREKLNKVSPEAAVMITTVWGVGYKLEV 235


>gi|107022380|ref|YP_620707.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|115351235|ref|YP_773074.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|116689327|ref|YP_834950.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|134295368|ref|YP_001119103.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|170697960|ref|ZP_02889043.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170732626|ref|YP_001764573.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|171318223|ref|ZP_02907386.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172060249|ref|YP_001807901.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|206559652|ref|YP_002230413.1| phosphate regulon two-component regulatory system response
           regulator protein [Burkholderia cenocepacia J2315]
 gi|105892569|gb|ABF75734.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|115281223|gb|ABI86740.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|116647416|gb|ABK08057.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|134138525|gb|ABO54268.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
 gi|169815868|gb|ACA90451.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
 gi|170137126|gb|EDT05371.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171096567|gb|EDT41461.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171992766|gb|ACB63685.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
 gi|198035690|emb|CAR51577.1| phosphate regulon two-component regulatory system, response
           regulator protein [Burkholderia cenocepacia J2315]
          Length = 233

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 5   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLP--GKSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+          G+       L   E R+L + M +  +  ++TQ
Sbjct: 123 RAPQLTEDVVSINGLRLDPATHRVAAHGDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|331092423|ref|ZP_08341248.1| hypothetical protein HMPREF9477_01891 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401266|gb|EGG80855.1| hypothetical protein HMPREF9477_01891 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 226

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 102/225 (45%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D + +++  +      G+   GF          +    ++  ++  L   GE  
Sbjct: 1   MIYCVEDDSNIRELVVYTLESTGMKARGFEDGRKFTEALAFETPELVLLDIMLP--GEDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ + +R       +P+I ++   S    +   D+G DD + KP    E+++R+ A+ R
Sbjct: 59  IEILKKLRNNAKTKNIPVIMVTAKGSEYDKVVGLDTGADDYITKPFGMMELVSRIKAVLR 118

Query: 118 RLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R          + G + +  +    +V G+   L  +E  +LE LM NR   + + ++  
Sbjct: 119 RTTREKEETKYQIGNLVIDVEKHKVKVDGKSVTLTLKEFELLEKLMKNRHIVLTRDRLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D + E   V+ H+  LR+KL +    + +++ R +GY I
Sbjct: 179 EIWG-YDFSGETRTVDVHVRTLRQKLGDAG--ELIETVRGVGYRI 220


>gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 233

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +G ++E   + E       +   D+  ++  L   G   L
Sbjct: 5   ILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARPPDLVVLDLMLP--GMDGL 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA H  V ++ ++   S    +   + G DD V KP    E++ARV A  RRL+
Sbjct: 63  EVCRRLRARHPAVYVLMLTARSSELDRVVGLEVGADDYVTKPFSLNELVARVRAGLRRLQ 122

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          E   +R+    R     G+   L  RE  +L +L  +  +   + Q+  
Sbjct: 123 LDRETADEAPLEFDGLRIDPVRRQVWRDGQPVHLTVREFELLLFLARHPDRPFTRLQLLR 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            ++G+ D       V+SHI +LR K+    G    + +   +GY  
Sbjct: 183 EVWGI-DYPGYARTVDSHIQRLRAKIEPTPGAPRYIRTVWGVGYKF 227


>gi|300691227|ref|YP_003752222.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum PSI07]
 gi|299078287|emb|CBJ50935.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum PSI07]
          Length = 237

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E    L S    D+  ++  L   G+  +
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLP--GKSGV 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              + +RA+    Q+P+I ++     Q  +   D+G DD V KP   +E+LAR+ A+ RR
Sbjct: 63  MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEV-QGE-----VFPLPRRERRILEYLMANRGKRVAK 170
              +++++      +R+           GE        L   E R+L +LM +  +  ++
Sbjct: 123 RAPQLTDDVVAINGLRLDPATHRVTAMNGESENPIKLDLGPTEFRLLHFLMTHPERVHSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +Q+   ++G     VEE  V+ HI +LR  L      + +++ R  GY +  N
Sbjct: 183 SQLLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234


>gi|210613371|ref|ZP_03289691.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
 gi|210151213|gb|EEA82221.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
          Length = 233

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       +   ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLTKECFDTMMVHDGEDALSAFDTYAPNLILLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR+ S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCRDIRSRSNTPIIMLSAKGEVFDKVLGLELGADDYIIKPFDAKELIARVKAVLRRYQP 124

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +               I +        V      +P +E  +L +L ++  +   + Q
Sbjct: 125 GKSDSASDDKGKCVSYPGITINLTNYSVVVDNIQVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   I+G ++   +   V+ HI ++R+K++N   +    +   +GY  + 
Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRIREKIKNHDTWGLA-TVWGIGYKFEV 232


>gi|239995182|ref|ZP_04715706.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           ATCC 27126]
          Length = 229

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +++    +    G ++      +  +        D+  ++  L   G   ++
Sbjct: 6   LVVEDEAPIREMLKFVLEQSGFNIIEAEDFDIAQEKICEPYPDLILLDWMLP--GGSGVQ 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + ++ H     +P+I ++     +  +   D+G DD V KP   +E++AR+ A+ RR+
Sbjct: 64  LAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVMRRV 123

Query: 120 KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +++    E   +++           E   +   E ++L + M +  +  ++  +   +
Sbjct: 124 TPTSSEEPIEFNGLKLEPVSHRVMANEEPLDMGPTEFKLLHFFMTHPERVYSRELLLDNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAISRHGHDAMIQTVRGAGYRF 225


>gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
 gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
          Length = 228

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 105/226 (46%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD  L+  G       D + ++  ++  E  E +++++  D+  ++  +       +
Sbjct: 5   LVVDDEKLIVKGLKFSLEQDDMEVDVAYDGGEAFEKIKNNS-YDIVLLDIMIPV--YTGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +++R  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR   
Sbjct: 62  EVCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSGK 121

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N  E   ++V  D R   V G+   L  +E  +LE LMA+  K  ++ ++  
Sbjct: 122 KAEPVKPVNIMEINGMKVELDSRRVFVHGKELNLTAKEFDLLELLMAHPNKVYSRNELLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            I+G      +   V+ H+ +LR+K+ +  G    + +K  +GY  
Sbjct: 182 TIWGST-YPGDARTVDVHVRRLREKIEDNPGEPVYIHTKWGVGYYF 226


>gi|66048256|ref|YP_238097.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|71734112|ref|YP_277191.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257485715|ref|ZP_05639756.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628101|ref|ZP_06461055.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651289|ref|ZP_06482632.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289677407|ref|ZP_06498297.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. syringae FF5]
 gi|298489418|ref|ZP_07007429.1| Phosphate regulon transcriptional regulatory protein phoB
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302187091|ref|ZP_07263764.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. syringae 642]
 gi|63258963|gb|AAY40059.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|71554665|gb|AAZ33876.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298155992|gb|EFH97101.1| Phosphate regulon transcriptional regulatory protein phoB
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|320321732|gb|EFW77830.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331482|gb|EFW87422.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330870966|gb|EGH05675.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330890623|gb|EGH23284.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. mori str. 301020]
 gi|330937451|gb|EGH41417.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330952444|gb|EGH52704.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae Cit 7]
 gi|330970220|gb|EGH70286.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330986909|gb|EGH85012.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011999|gb|EGH92055.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 229

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++     E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098]
          Length = 226

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEV--AIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRHLVTVRGLGYKFE 225


>gi|224476783|ref|YP_002634389.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421390|emb|CAL28204.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 238

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 100/231 (43%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +E     E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKLDAVQPDLVVLDVMLP--KLDGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 63  EVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQ 122

Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +  E          G I++  +  +     E+  L  +E  +L YL+  +G+ + + 
Sbjct: 123 QVQSVKEDENDNEDVIIGSIKIRPEYFEVYKNNELLELTPKEFELLLYLIERQGRVITRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            + ++++  ++   +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 183 HMLNSVWN-YEFTGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|296283968|ref|ZP_06861966.1| phosphate regulon response regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 229

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 109/225 (48%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +     F ++G  +    + + +E L  ++ +    I    + +G   +
Sbjct: 6   LILVEDDPALAELLEFRFANEGYQVRV--TADGDEALLMASEDVPDLIILDWMIEGTSGI 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R       VP+I ++   +    +   ++G DD + KP   RE+LARVAA+ RR
Sbjct: 64  EVCRRLRRDKGTAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++   +    E G IR+       E +G    L   E R+L++ M + G+  ++ Q+   
Sbjct: 124 IRPALAGETIEVGDIRLDPVAHKVERRGRNLQLGPTEYRLLKFFMESPGRVFSRGQLLDG 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G     +E   V+ HI +LRK L  +   DP+ + R  GY+++
Sbjct: 184 VWGTG-SDIELRTVDVHIRRLRKALELEGASDPIRTVRSAGYALE 227


>gi|291458230|ref|ZP_06597620.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418763|gb|EFE92482.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 251

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 95/244 (38%), Gaps = 29/244 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + +        +          E    +    R D+  ++  L   G    
Sbjct: 7   ILIVDDDSSISELISLYLEKECFDTRMVEDGEEALRIVPEYRPDLIILDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R  S VP+I +S        +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  EVCRRLRMRSSVPVIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRCPK 124

Query: 121 ------------------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
                                    S N  E   + +         +G+   +P +E  +
Sbjct: 125 KRGDAALPGESAETVRRAEPEGGLRSGNYIEYPELIINQSNYSVFYRGKPVEMPPKELEL 184

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           L +L ++  +   + Q+   I+G ++ A +   V+ HI +LR+K+     ++ + +   +
Sbjct: 185 LYFLASSPNQVFTREQLLDHIWG-YEFAGDSRTVDVHIKRLREKISGNGAWE-IATVWGI 242

Query: 217 GYSI 220
           GY  
Sbjct: 243 GYKF 246


>gi|229189480|ref|ZP_04316497.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594071|gb|EEK51873.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 218

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE+  L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEANGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|218778734|ref|YP_002430052.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760118|gb|ACL02584.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 229

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +G  A   + G      +  +           D+  ++  L   G+  +
Sbjct: 7   ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLP--GKDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R+ SQ+P+I ++        L   + G DD + KP   RE++ARV A+ RR   
Sbjct: 65  EVCKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNT 124

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R   GPI +  D R+  V G    L   E  IL+ +M+   +  ++ ++     
Sbjct: 125 PQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLAI 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           G       +  ++SHI  LRKK++  L   + + S    GY  +
Sbjct: 185 G-SQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFN 227


>gi|157962787|ref|YP_001502821.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157847787|gb|ABV88286.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 229

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +    G +       +    + +    D+  ++      G   +
Sbjct: 5   ILIVEDELAIREMLTFVLEQHGYTTVAAEDYDSALDMLTEPYPDLVLLDWMFP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + +R       +P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +  +   +++        V  EV  +   E R+L + M ++ +  ++ Q+   
Sbjct: 123 SAPTCLEDPIDVQGLQLDPVSHRVTVGDEVLDMGPTEFRLLHFFMTHQERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK + +      + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVTHSGHDRLIQTVRGAGYRF 225


>gi|74310968|ref|YP_309387.1| transcriptional regulator PhoB [Shigella sonnei Ss046]
 gi|73854445|gb|AAZ87152.1| positive response regulator for pho regulon [Shigella sonnei Ss046]
          Length = 229

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 238

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 94/231 (40%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +E   + E    L      D+  ++  +   G   +
Sbjct: 7   ILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLALEIDYDLILLDIMMP--GMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R     P++ ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCQELRKTKATPVMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSST 124

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D     V G+   L  +E  +L YL  +  K  ++ Q
Sbjct: 125 TKFLQTDTQTKDVLVFPHLTIDNDAHRVSVNGDEISLTPKEYELLHYLAQSPDKVFSREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
           +   ++  +D   +   V++HI +LR+KL   +      + +   +GY  +
Sbjct: 185 LLKDVWN-YDFFGDLRTVDTHIKRLREKLNRISPEAAAMISTVWGVGYKFE 234


>gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 226

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +    L   +G S E   +    + L++  R     +   L+  G    E
Sbjct: 5   LIVEDEESMAEPLAFLLRKEGFSTEIATN--GPDALETFDRVGADIVLLDLMLPGMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + +R    VP+I ++   S    +   + G DD + KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRGRGAVPVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARIRAVLRRGADA 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   + GP+R+  D     V G    LP +E  +LEYL+ N G+ + + Q+   ++
Sbjct: 123 DDAHSPVLQAGPVRMDVDRHVVSVHGVPTSLPLKEFDLLEYLIRNAGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPAEPRYLVTVRGLGYKLE 225


>gi|332968994|gb|EGK08036.1| phosphate regulon transcriptional regulatory protein PhoB
           [Psychrobacter sp. 1501(2011)]
          Length = 232

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 94/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  +      G        +          R  +  ++  L G  +  +
Sbjct: 6   ILVVEDEPAIREMIVTTLEMSGFECLQAEDVNDAHNQVVDHRPAMILLDWMLPGN-QSGI 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKKDEMLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRR 124

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             V +     E   + +    +     G    +   E R+L + M++  +   +TQ+   
Sbjct: 125 SSVLSGEKPIEAEGLSLDPVSQRLSADGTPVEIGPTEYRLLAFFMSHPERAYTRTQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  ++ HI +LRK L        + + R  GY  
Sbjct: 185 VWGG-NVYVEDRTIDVHIRRLRKVLEPYNYAGFIQTVRGTGYRF 227


>gi|291538269|emb|CBL11380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 10/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    + +    D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLP--KMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   S
Sbjct: 64  VCQHIREFSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAAS 123

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +       E G +++  + R   + G+   L  +E  +LE L+ N  K   +  + + 
Sbjct: 124 QPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           ++G ++   +   V+ H+ +LR+K+  N      V  K  +GY    N
Sbjct: 184 VWG-YEYPGDVRTVDVHVRRLREKIESNPSEPKYVHIKWGVGYYYSQN 230


>gi|228990198|ref|ZP_04150168.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228769561|gb|EEM18154.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 234

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L+DD   +      +   +G S +    S E         R D+  ++  L   G+   
Sbjct: 7   LLVDDETAILQLLTTILQKEGFSHITTATSAEEALQFVEQNRYDLMILDVMLP--GQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR   
Sbjct: 65  DICPIIRQKTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +          G  +V     + +V G++     +  ++L +   +     +K +I+
Sbjct: 125 QTTQPMKETHFLSFGRFQVDKHAAELQVDGKIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +      + + R LGY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPQYIKTVRGLGYKF 231


>gi|330830656|ref|YP_004393608.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas veronii B565]
 gi|328805792|gb|AEB50991.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas veronii B565]
          Length = 229

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G   E   + ++ + L          I    +  G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGY--ETIEAEDYADGLAKVREPYPELIVLDWMMPGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++      Q+P++ ++     +  +   ++G DD + KP   +E+ AR+ A+ RR
Sbjct: 63  QFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  +   E   +++         + +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 VSPTSVDEVIEVQGLKLDPVSHRVSAEEKALDMGPTEFKLLHFFMTHPERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEETGHDRLIQTVRGAGYRF 225


>gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 229

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D + +          +G  +  F++      +      D+  ++  L   G   +
Sbjct: 5   ILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINILKEKSFDLLLLDIMLP--GLNGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S +P+I ++    L+  +   D G DD + KP    E+LAR+ A  RR + 
Sbjct: 63  EVCSQIREFSDIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHLRRDEG 122

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N  +T  + V  D    +  GE   L ++E  +L YL+ N G  V++ ++ + ++
Sbjct: 123 NLENENILKTADVEVKLDAHIVKRAGEEIELTKKEYDLLVYLIRNEGIVVSRDKLLNNVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   E N+V+ +I  LR K+ +      + + R +GY +
Sbjct: 183 G-YDYTGETNIVDVYIRYLRSKIDDPFSQKIIHTVRGVGYVL 223


>gi|291563929|emb|CBL42745.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 234

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +  F +   +E L+   +E++  +   ++  G   L
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGYKV--FKANNAKEGLEILDQEEIHLVLLDIMMPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  + +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCRKIRETNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   K + N      + +  D     V GE   L   E  IL  L +N G+  +  
Sbjct: 124 LNPNSSTGKAAKNEISIRGLSINKDNHKVVVYGEEIKLTPIEFDILYLLASNPGRVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +IF  ++         N V  HI +LR K++     D  + +   +GY I+
Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQDKIITTVWGVGYKIE 233


>gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 228

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G + +   + +  + L      D+  ++  +       ++
Sbjct: 9   LIVDDDENICEVIDMYLKSVGFNTKIALNGKEAKMLYMDYNPDLVLLDMMIPQV--DGID 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR   + P+I I+        +   + G DD + KP   +E+LARV A+ RR  V 
Sbjct: 67  VLKWIRKQGERPVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYSVD 126

Query: 123 NNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           N++    +   + + S        G+   +P +E  +L YL +N+ K   + Q+   ++G
Sbjct: 127 NDKNQVIKLSDLVIDSTSYKVIYDGKDIKMPPKEFELLYYLASNKNKVFTREQLLCEVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V+ H+ +LR+KL +      +++   +GY  + 
Sbjct: 187 -YDYPGDSRTVDVHVKRLREKL-SGGEQWQIETVWGVGYKFEV 227


>gi|254414181|ref|ZP_05027948.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178856|gb|EDX73853.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 227

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G  +               ++ D+  ++  L   G   L
Sbjct: 5   ILVVEDEAKLAKFIELELQYEGYQVSVAPDGFAGLATARESQPDLLILDWMLP--GVSGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    VP+I ++    +   +   D+G DD V KP    E+LARV A  RR +
Sbjct: 63  EICRRLRSTGDKVPIILLTAKDEVSDRVAGLDAGADDYVVKPFSLEELLARVRAHLRRNQ 122

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  +   + +    R+      +  L  +E  +L+YL+++  + + + QI   ++G
Sbjct: 123 EEDPDTLQFADLSLNHSTREVYRGDRLIELTAKEFDLLDYLISHPRQVLTRDQILERVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL        V + R +GY +
Sbjct: 183 -YDFMGDSNIIEVYVRYLRLKLEANGEKRLVQTVRGVGYVL 222


>gi|296134173|ref|YP_003641420.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032751|gb|ADG83519.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 228

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +E  N         +  + D+  ++  L       +
Sbjct: 6   ILIIEDEVKIARFLELELKYEGYMVEQENDGRSGLERATGGKFDLIILDVMLPS--LNGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S+ P+I ++    +   +   D G DD + KP    E+LAR+ A+ +R K 
Sbjct: 64  EVLRRLRQVSETPVIMLTAKDEVTDKVMGLDIGADDYMTKPFAIEELLARIRAVLKRRKP 123

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +N++      G +++  +        E   L ++E  +L YL+ N+   + + +I   ++
Sbjct: 124 ANHKRDIITAGDLKINLEQHSVCFNKEPVDLTKKEYDLLCYLVQNKNMVLTRDKILETVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   + NVV+ +I  LR K+ ++     + + R +GY I
Sbjct: 184 G-YDYYGDTNVVDVYIRYLRSKIDDRFNTKLIHTVRGVGYII 224


>gi|194290067|ref|YP_002005974.1| DNA-binding response regulator in two-component regulatory system
           with phor [Cupriavidus taiwanensis LMG 19424]
 gi|193223902|emb|CAQ69911.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Cupriavidus taiwanensis LMG 19424]
          Length = 235

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E    L S    D+  ++  L   G+   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLP--GKSGA 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              + +RA+    Q+P+I ++     Q  +   ++G DD V KP   +E+LAR+ A+ RR
Sbjct: 63  NFAKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++++      +R+         Q E       L   E R+L +LM +  +  +++Q
Sbjct: 123 RAPQLTDDVVAINGLRLDPATHRVTGQDESGPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229


>gi|237707608|ref|ZP_04538089.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA]
 gi|226898818|gb|EEH85077.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA]
 gi|315289887|gb|EFU49277.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 110-3]
 gi|323958591|gb|EGB54294.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H263]
          Length = 229

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDCMVQTVRGTGYRF 225


>gi|149927072|ref|ZP_01915330.1| phosphate regulon transcriptional regulatory protein [Limnobacter
           sp. MED105]
 gi|149824293|gb|EDM83513.1| phosphate regulon transcriptional regulatory protein [Limnobacter
           sp. MED105]
          Length = 235

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +      +  + L ++   D+  ++  L   G+  +
Sbjct: 5   ILVVEDEPAIAELIAVNLSFAGHKVLRAADADQAKTLITAELPDLVLLDWMLP--GKTGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +    +R H     VP+I ++     Q  +D  ++G DD + KP   +E+LAR+ A+ RR
Sbjct: 63  QFAHELRGHERTRHVPVIMLTARTEEQDKVDGLEAGADDYITKPFSPKELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++++  E   +++           ++  +   E R+L + M +  +  ++TQ+   
Sbjct: 123 RAPQLTDDIVEVHGLKLDPVTHRIMGHDKIIDMGPTEFRLLHFFMTHPERVHSRTQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LR+ L        +++ R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRQALTISGHDRLIETVRGAGYRF 225


>gi|89899389|ref|YP_521860.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344126|gb|ABD68329.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 240

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G            +    +   DV  ++  L   GE  L 
Sbjct: 8   LIVEDEPAIAELIAVNLRHNGFRPTWAMDSASAQRELDAVLPDVILLDWMLP--GESGLA 65

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L +  RAH +   +P+I ++        +   D+G DD + KP   +E+LAR+ A+ RR 
Sbjct: 66  LAKRWRAHPRTKAIPIIMLTARGDETDRVAGLDAGADDYIAKPFSTKELLARMRAVLRRR 125

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + + +        G+   L   E ++L+YLM++  +  ++ Q+   +
Sbjct: 126 APEQVGGVVSVGALSLDTATYRVTFAGQPLKLGPTEFKLLQYLMSHAERVHSRGQLLDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L  + G   V++ R  GY +
Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGAQAG-QMVETVRGAGYRL 226


>gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 226

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEV--AIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRVRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225


>gi|229593403|ref|YP_002875522.1| phosphate regulon two-component system response regulator
           [Pseudomonas fluorescens SBW25]
 gi|312963904|ref|ZP_07778375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens WH6]
 gi|229365269|emb|CAY53596.1| phosphate regulon two-component system, response regulator
           [Pseudomonas fluorescens SBW25]
 gi|311281939|gb|EFQ60549.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens WH6]
          Length = 229

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++     E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
 gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
          Length = 232

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G +     +      +    + D+  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLP--GMDGY 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR  +     P+I I+        +   + G DD + KP   RE++ARV A+ RR
Sbjct: 64  EVCKEIRKDNNTATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               N  +++   G I V  +       GE   L  +E  +LE L+ N+GK + +  +  
Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            I+G ++   E   V+ HI  LRKK+ +       +++ R +GY  +
Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229


>gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 331

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G   E            S    D+  ++  +       +
Sbjct: 107 ILIVDDEPRIRELIREHLQYSGYICEEAADGTAALTQLSGGAFDLVILDLMMPF--MDGM 164

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
              R +RA     P+I ++        L   +SG DD V KP   RE++ARV A+  R  
Sbjct: 165 TCLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLNRTM 224

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +++    G + + +      V GE   L  +E  +L +L +N+G  +++ +I   
Sbjct: 225 PKPAAASDTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQK 284

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   E+  V++H+  LR  L        + +   +GY  D
Sbjct: 285 VWN-YDYFGEDRTVDTHVKMLRGHLGK--CRSYIATVWGIGYKFD 326


>gi|291484740|dbj|BAI85815.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 251

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 93/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +  +++   + +        A  D+  ++  +   G   +
Sbjct: 20  ILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMP--GTDGI 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 78  EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 137

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++         N      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 138 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 197

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 198 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 248


>gi|284047511|ref|YP_003397850.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951732|gb|ADB46535.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 225

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +   ++D   +++             E F           + + D+  ++  L   GE  
Sbjct: 3   LIYCVEDDENIRELVRYALCSQKFQAEAFPDGPSFWKALEAKQPDLVLLDIMLP--GESG 60

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L++ + +R   A S +P+I ++   S    +   D+G DD ++KP    E+L+RV A+ R
Sbjct: 61  LDILKKLRDSQATSGLPVIMLTARTSEYDVVTGLDAGADDYISKPFGIMELLSRVKAVLR 120

Query: 118 RLKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R         N    G I +         QG+   L  +E  +L YLMAN G  +++ QI
Sbjct: 121 RGGRQKPQDRNLLVCGDITLDLKKHRVTTQGQPCELTVKEFDLLHYLMANAGIVLSRDQI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             A++  F  A E   ++ HI  LR+KL        + + R +GY I
Sbjct: 181 MEAVW-SFSYAGESRTIDMHIRSLRQKLGEAG--RIIQTVRGVGYRI 224


>gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 236

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L  K    +
Sbjct: 6   ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQK--DGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 64  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRRHTQ 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     N    G + +  D      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 124 IVAQEETNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 230


>gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
 gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
          Length = 238

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 105/231 (45%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A + +       ++G S     +   E+ L+   RE V A+   L+  G   L
Sbjct: 5   ILLVDDEAHILELLKYTMENEGFS--TLQAETGEQALKLLGRERVDAVILDLMLPGIDGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR       +P++ ++        +   + G DD + KP   RE++ARV A+ RR
Sbjct: 63  EVLKNIRVTPGTKNLPVLMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVLRR 122

Query: 119 LKVSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +              + GPI +    R  + +GE+  L  +E  +L     N GK + +
Sbjct: 123 AEAPGEPGAKKDNRFLKIGPIEIDEIKRTVKRRGELLELTLKEFDLLRLFAQNPGKVITR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +I + I+G +D   E   V+ HI +LRKK+  +      + + R +GY +
Sbjct: 183 DEILTKIWG-YDYTGETRTVDVHIRQLRKKIEEDDSNPQYILTVRGVGYKL 232


>gi|158425656|ref|YP_001526948.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
 gi|158332545|dbj|BAF90030.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
          Length = 233

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G +++     +  E     +  D+  ++  L   G   +
Sbjct: 5   ILIIEDEEPLTLLLRYNLESEGYAVDNVGRGDEAETRLRESVPDLVILDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +    +G DD V KP    E+LARV A+ RR
Sbjct: 63  ELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K  +       G I +  +       G    L   E R+LE+LM + G+  ++ Q+   
Sbjct: 123 AKPEHVATLLRAGDIELDRETHRVHRSGREVHLGPTEFRLLEFLMQSPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ H+ +LRK +      DP+ + R  GYS +
Sbjct: 183 VWGQ-DVYIDERTVDVHVGRLRKAINRGRQPDPIRTVRGAGYSFN 226


>gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W]
 gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II]
          Length = 238

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       +   D+  ++  L       L
Sbjct: 6   ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLP--KIDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 123

Query: 122 SNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           SN             E G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 124 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 184 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 232


>gi|111019061|ref|YP_702033.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226361154|ref|YP_002778932.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
 gi|110818591|gb|ABG93875.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226239639|dbj|BAH49987.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
          Length = 229

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 104/227 (45%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTIVGDGPSALAEFDRAGADIVLLDLMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRSRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVDS 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +   +   E GP+R+  +    +V GE   LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 ELDVAQDSAVLEAGPVRMDVERHVVQVNGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +    + + + R LGY ++
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIETDPAKPEHLVTVRGLGYKLE 228


>gi|225420051|ref|ZP_03762354.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme
           DSM 15981]
 gi|225041307|gb|EEG51553.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme
           DSM 15981]
          Length = 234

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +  F +      L+   +E++  +   ++  G   L
Sbjct: 6   ILVVDDEKEIADLIEIYLVSDGYKV--FKAENAARGLEILEKEEIHLVLLDIMMPGMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR ++ +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCKKIRENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   + +NN      + +  D     V  E   L   E  IL  L +N G+  +  
Sbjct: 124 LNPNSGSREQANNEITIKGMVINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGRVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +IF  ++         N V  HI +LR KL+        + +   +GY I+
Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKLKEDTRQSKIITTVWGVGYKIE 233


>gi|295110688|emb|CBL24641.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 222

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  I      G S +G  + +           D+  ++  L G  G  
Sbjct: 1   MIYCVEDEKNIRELLIYTLETTGFSAKGMANAKELRIALKEELPDLILLDIMLPGEDGYS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +LE  ++ R    +P+I ++   +    +   ++G DD + KP    E +ARV A+ RR 
Sbjct: 61  ILESLKLSRDTRGIPVIMVTAKEAEYDKVKGLEAGADDYITKPFGMMEFVARVKAVLRRC 120

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +     TG + +         +     L R+E  +L+YLM N+G  +++ QI   +
Sbjct: 121 SKQEDDKELRTGDLSLSVGRHKVRWKDTSVELTRKEFELLQYLMENKGLVMSRNQILCHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   E   V+ H+  LR+KL      + +++ R +GY I
Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGEAG--NLIETVRGVGYRI 220


>gi|221201978|ref|ZP_03575014.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2M]
 gi|221204892|ref|ZP_03577909.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2]
 gi|221213870|ref|ZP_03586843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD1]
 gi|221166047|gb|EED98520.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD1]
 gi|221175749|gb|EEE08179.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2]
 gi|221178061|gb|EEE10472.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2M]
          Length = 235

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 7   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLP--GKSGI 64

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 65  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124

Query: 119 L--KVSNNRAETGPIRVFSDGRDP--EVQGEVF--PLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+         +  G      L   E R+L + M +  +  ++TQ
Sbjct: 125 RAPQLTEDVVSINGLRLDPATHRVAAQTNGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|73541850|ref|YP_296370.1| phosphate regulon transcriptional regulatory protein phoB
           [Ralstonia eutropha JMP134]
 gi|72119263|gb|AAZ61526.1| Phosphate regulon transcriptional regulatory protein phoB
           [Ralstonia eutropha JMP134]
          Length = 235

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E    L S    D+  ++  L   G+   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLP--GKSGA 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              + +RA+    Q+P+I ++     Q  +   ++G DD V KP   +E+LAR+ A+ RR
Sbjct: 63  TFAKELRANDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++++      +R+         +         L   E R+L +LM +  +  +++Q
Sbjct: 123 RAPQLTDDVVAINGLRLDPATHRVTGEDNAGPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229


>gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 228

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 103/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  N  +    L+ + + D+  +   ++  G   +
Sbjct: 4   ILIVEDEVKIARFVELELKYEGYTVDIAN--DGRSGLEKALKSDIDLVLLDVMLPGLSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQVP+I ++    +   +   D G DD + KP    E+LAR+     R   
Sbjct: 62  EVCRRIRMESQVPIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVALSRHSK 121

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S      +    G +++           E   L ++E  +LEYLM N+   + + Q+ + 
Sbjct: 122 SSAEAKQDVLTHGELKLNLTSHSANYGEEDLTLTKKEYELLEYLMRNKNIALTREQLLNN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  ++   + NVV+ +I  LR+K+ +K G   + + R +GY I
Sbjct: 182 VWD-YEYFGDTNVVDVYIRYLRQKIDDKYGVHLISTVRGVGYII 224


>gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 222

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 95/218 (43%), Gaps = 3/218 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G  +  + + + E  L ++ +     +   +   G   LE
Sbjct: 6   LLVDDDQTILSLLKRGLAYEGFEV--YTAPDGETGLAATKKYQPHLVLLDIAMPGLDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +     + +I ++    +   +     G DD V KP    E++AR+ A+ RR   S
Sbjct: 64  LCRRLHVLGDIAIIMLTARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVLRRHTGS 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                   + +    R+    G++  L  RE  +L  LM +  + + + QI   ++G ++
Sbjct: 124 QEMLSYSDLELNQATREVHRDGQLIELTTREYDLLLLLMRHPRQVLTRDQILEQVWG-YN 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +E NV+E H+  LR+KL    G   + + R +GY +
Sbjct: 183 ADLETNVLEVHMGHLRQKLEASGGSRVIQTIRGVGYVL 220


>gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 237

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       +   D+  ++  L       L
Sbjct: 5   ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLP--KIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 122

Query: 122 SNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           SN             E G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 123 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 231


>gi|289450569|ref|YP_003475161.1| response regulator receiver domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185116|gb|ADC91541.1| response regulator receiver domain protein [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 232

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD  +V +     F ++G      +N  E  E   S    D+  ++  +       
Sbjct: 7   ILICDDDPVVHESLSLYFDNEGFKHSSAYNGSEAIEHFHSD-NPDLIVLDMMMPE--MNG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R IR  S VP+I ++        +   + G DD + KP   RE++AR+ A+ RR+ 
Sbjct: 64  VDVCREIRRMSNVPIIMLTAKSEEIDKVVCLEIGADDYITKPFSVREVVARIKAVLRRIT 123

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S++  +   + +       +V+GEV P   +E  IL  L +N GK +++  I   
Sbjct: 124 ETPVTSSDCLKLPDLELTPFNYQVKVRGEVVPFTPKEFEILYMLASNPGKVISREDIMQK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+G ++   +   +++H+ ++R+K+        + +   LGY  +
Sbjct: 184 IWG-YNYEGDLRTIDTHVKRIRQKINVDNAKWALSTVYGLGYKFE 227


>gi|312115104|ref|YP_004012700.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220233|gb|ADP71601.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 236

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S+      +  E        D+  ++  L   G   +
Sbjct: 5   ILIVEDEEALALLLQYNLEAEGFSVSISQRGDEAEVAIGEEPPDLIILDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA      +P++ ++        +     G DD V KP    E+LARV AI RR
Sbjct: 63  ELCRRLRAGKTARTIPILLLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAILRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   E   I +  +       G    L   E ++LE+LM + G+  ++TQ+   
Sbjct: 123 AAPERISQTLEVEDIELDRETYRVMRSGREVRLGPTEFKLLEFLMESPGRVFSRTQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V+E  V+ HI +LRK +      DP+ + R  GY++
Sbjct: 183 VWGR-DVYVDERTVDVHIGRLRKAINRGKEKDPIRTVRGAGYAL 225


>gi|228957669|ref|ZP_04119416.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229108854|ref|ZP_04238459.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126714|ref|ZP_04255726.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229149599|ref|ZP_04277831.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228633945|gb|EEK90542.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228656654|gb|EEL12480.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228674623|gb|EEL29862.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228802011|gb|EEM48881.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 218

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|209695880|ref|YP_002263810.1| response regulator homolog PhoB (phosphate regulon transcriptional
           regulatory protein) [Aliivibrio salmonicida LFI1238]
 gi|208009833|emb|CAQ80141.1| response regulator homolog PhoB (phosphate regulon transcriptional
           regulatory protein) [Aliivibrio salmonicida LFI1238]
          Length = 230

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 96/222 (43%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +    L      D+  ++  L G  G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDTALALLCEPYPDLILLDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      ++P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRVS 124

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   +++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTSVEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L  +     V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAEGHDRLVQTVRGAGYRF 225


>gi|330961382|gb|EGH61642.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 229

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++     E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E       +   D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEKAKAQEYDLILLDIMLP--KYTGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + ++IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR   S
Sbjct: 64  VCQMIREFSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGKS 123

Query: 123 ------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N      +++    R   V G+   L  +E  +LE L  N  K  ++ ++ + 
Sbjct: 124 VKEKEDKNIILKNDMKIDRQSRRVYVDGKEINLTAKEFDLLELLATNPDKVYSREELLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ H+ +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHVRRLREKVEPNPSEPKYVYTKWGVGYYF 227


>gi|118589317|ref|ZP_01546723.1| phosphate regulon transcriptional regulatory protein [Stappia
           aggregata IAM 12614]
 gi|118438017|gb|EAV44652.1| phosphate regulon transcriptional regulatory protein [Stappia
           aggregata IAM 12614]
          Length = 233

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G S+E     +  E     +  D+  ++  L   G   +E
Sbjct: 5   LIVEDEEPLSLLLRYNLEAEGYSVESCVRGDEAEIRLRESLPDLLLLDWMLP--GLSGIE 62

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R +RA       P+I ++        +    +G DD V KP    E++ARV AI RR 
Sbjct: 63  LCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 122

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +    +G I +  +        +   L   E R+LE+LM + G+  ++ Q+   +
Sbjct: 123 SPEVVSTMLRSGDIELDRETHRVRRNAKEIHLGPTEFRLLEFLMTSPGRVFSREQLLDGV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  V+E  V+ H+ +LRK L      DP+ + R  GY+ +
Sbjct: 183 WG-HDVYVDERTVDVHVGRLRKALNKGKAKDPIRTVRGAGYAFN 225


>gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 7   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 65  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 125 EQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 223


>gi|15600553|ref|NP_254047.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
 gi|116053507|ref|YP_793834.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152987707|ref|YP_001351454.1| two-component response regulator PhoB [Pseudomonas aeruginosa PA7]
 gi|218894463|ref|YP_002443333.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           LESB58]
 gi|254237949|ref|ZP_04931272.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           C3719]
 gi|254243755|ref|ZP_04937077.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
 gi|296392220|ref|ZP_06881695.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAb1]
 gi|313106787|ref|ZP_07793002.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           39016]
 gi|12230950|sp|P23620|PHOB_PSEAE RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|9951681|gb|AAG08745.1|AE004948_1 two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
 gi|115588728|gb|ABJ14743.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169880|gb|EAZ55391.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           C3719]
 gi|126197133|gb|EAZ61196.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
 gi|150962865|gb|ABR84890.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas aeruginosa PA7]
 gi|218774692|emb|CAW30509.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           LESB58]
 gi|310879504|gb|EFQ38098.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           39016]
          Length = 229

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++    E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 TGPGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGEVYE-NLVQTVRGTGYRF 225


>gi|27363935|ref|NP_759463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           vulnificus CMCP6]
 gi|37678907|ref|NP_933516.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016]
 gi|320157317|ref|YP_004189696.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio vulnificus MO6-24/O]
 gi|27360052|gb|AAO08990.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           vulnificus CMCP6]
 gi|37197648|dbj|BAC93487.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016]
 gi|319932629|gb|ADV87493.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio vulnificus MO6-24/O]
          Length = 229

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++               +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDAPVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEDAGHDKLIQTVRGAGYRF 225


>gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 228

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 101/225 (44%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G ++E  +         ++   D+  ++  L       +
Sbjct: 5   ILVIEDEVKIARFLELELTYEGYAVEVAHDGRSGYEKAAAGNVDLIILDLMLPE--LSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S VP+I ++    +   +   DSG DD + K     E+LAR+  I +R   
Sbjct: 63  EVCRRVRKESDVPIIMLTAKDDVSDKVMGLDSGADDYMTKSFAIEELLARIRVILKRKSK 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S+     G + +  D      +G+   L ++E  +L+YLM N+G  +++ +I   ++
Sbjct: 123 KEGSSAVIAAGRLVLLRDEHRVTFEGKEISLSKKEFELLKYLMENKGIVLSREKILDHVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D   + NV + +I  LR K+  K     + + R +GY    +
Sbjct: 183 G-YDYYGDTNVTDVYIKYLRNKIDQKFDVRFIHTVRGVGYIFKQD 226


>gi|104784360|ref|YP_610858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas entomophila L48]
 gi|95113347|emb|CAK18075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas entomophila L48]
          Length = 229

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S++    E G + +        + G    +   E R+L++ M ++ +   + Q+   
Sbjct: 124 TGPSDSEAPIEVGGLLLDPISHRVTIDGRPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225


>gi|82775697|ref|YP_402044.1| transcriptional regulator PhoB [Shigella dysenteriae Sd197]
 gi|309786981|ref|ZP_07681593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1617]
 gi|1172482|sp|P45606|PHOB_SHIDY RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|152773|gb|AAA26535.1| phosphate regulatory protein phoB [Shigella dysenteriae]
 gi|81239845|gb|ABB60555.1| positive response regulator for pho regulon [Shigella dysenteriae
           Sd197]
 gi|308924559|gb|EFP70054.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1617]
          Length = 229

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|237730369|ref|ZP_04560850.1| transcriptional regulator PhoB [Citrobacter sp. 30_2]
 gi|226905908|gb|EEH91826.1| transcriptional regulator PhoB [Citrobacter sp. 30_2]
          Length = 229

 Score =  247 bits (632), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGEEPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|94311118|ref|YP_584328.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354970|gb|ABF09059.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Cupriavidus metallidurans CH34]
          Length = 235

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E    L S    D+  ++  L   G+   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLP--GKSGA 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              + +R      Q+P+I ++     Q  +   ++G DD V KP   +E+LAR+ A+ RR
Sbjct: 63  TFAKELRNNDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++++      +R+         Q +       L   E R+L +LM +  +  +++Q
Sbjct: 123 RAPQLTDDVVAINGLRLDPATHRVTGQDDGGPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229


>gi|266622614|ref|ZP_06115549.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
 gi|288865657|gb|EFC97955.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
          Length = 234

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       D + ++     E    L      DV  ++  L        
Sbjct: 4   ILVVDDEKLIVKGIRFSLEQDNMEVDCAYDGEEAINLAKQKEYDVVLLDVMLP--KFDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + IR  S++P+I ++   +    +   + G DD + KP +  E+ AR+ AI RR   
Sbjct: 62  EVCQAIREFSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTK 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  +N   +G +++  D R   +  +   L  +E  +LE L  N  K  ++ Q+
Sbjct: 122 KNRRESRAGSNVVTSGDLKLDRDSRRVFIGEKEINLTAKEFDLLELLACNPNKVYSREQL 181

Query: 174 FSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G    ++ +   V+ H+ +LR+K+  +      V +K  +GY  
Sbjct: 182 LTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 230


>gi|148653890|ref|YP_001280983.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148572974|gb|ABQ95033.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 233

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  +      G        +          R  +  ++  L G  +  +
Sbjct: 6   ILVVEDEPAIREMIVTTLEMAGFECLQAEDVSEAHSQVVDHRPAMILLDWMLPGN-QSGI 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKKDELLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRR 124

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   E   + +    +     G    +   E R+L + M++  +   +TQ+   
Sbjct: 125 SSALSGDKPIEAEGLSLDPVSQRLSADGTPLEIGPTEYRLLAFFMSHPERAYTRTQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  ++ HI +LRK L      + + + R  GY  
Sbjct: 185 VWGG-NVYVEDRTIDVHIRRLRKVLEPYNYAEFIQTVRGTGYRF 227


>gi|28897343|ref|NP_796948.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838075|ref|ZP_01990742.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ3810]
 gi|260364511|ref|ZP_05777132.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus K5030]
 gi|260876305|ref|ZP_05888660.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AN-5034]
 gi|260898576|ref|ZP_05907072.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus Peru-466]
 gi|260903268|ref|ZP_05911663.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ4037]
 gi|28805552|dbj|BAC58832.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748542|gb|EDM59401.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ3810]
 gi|308086888|gb|EFO36583.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus Peru-466]
 gi|308092989|gb|EFO42684.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AN-5034]
 gi|308107972|gb|EFO45512.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ4037]
 gi|308114699|gb|EFO52239.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus K5030]
 gi|328472632|gb|EGF43495.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus 10329]
          Length = 229

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEAVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|229016644|ref|ZP_04173581.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022859|ref|ZP_04179379.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228738394|gb|EEL88870.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744634|gb|EEL94699.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 218

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALRKLENDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  G+   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIETDGQAVSLTVKEFDLLYFLCQHNGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|269219051|ref|ZP_06162905.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212162|gb|EEZ78502.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 227

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    L   +G  +    +      L  + R D+  ++  L   G   +
Sbjct: 5   ILVVDDDPSIAEMLALLLESEGFEVSVCATGNNALPLFRADRPDLVLLDVMLP--GLDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R+IR  S VP+I +S        +   ++G DD V KP  +  +LARV A  RR + 
Sbjct: 63  SVCRLIREESDVPIIMMSARTDSVDVIAGLEAGADDYVTKPFENSVLLARVKARLRRQEP 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       + +       +  G+V  L   E  +L  L     +  ++ ++   ++G  
Sbjct: 123 EHEVLRVSDLTIDLKAHQVQRAGKVLHLTPLEFELLSVLARKPWQVFSREELLEQVWGYR 182

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             + +  VV  HI +LR K+  +    + V + R +GY 
Sbjct: 183 QSSHDPRVVNVHIQRLRSKVEHDPDHPEVVLTVRGVGYR 221


>gi|167836227|ref|ZP_02463110.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis MSMB43]
          Length = 233

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLP--GKSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+         QG+       L   E R+L + M +  +  ++TQ
Sbjct: 123 RAPQLTEDVVSINGLRLDPATHRVAAQGDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|295400059|ref|ZP_06810039.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110691|ref|YP_003989007.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294977838|gb|EFG53436.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215792|gb|ADP74396.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 225

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 12/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE---WLQSSAREDVSAIEAFLIGKGEK 59
           +++DD   ++           +   GF+ LE E+    L   A   V A+   ++     
Sbjct: 9   LIVDDEEDMR-----FLVKMYLENAGFSCLEAEDGDKALDVLANVKVDAVLIDIMMPKMD 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              L   IR  S VP++ ++        +     G DD + KP    E++AR+ A+ RR 
Sbjct: 64  GFSLCERIRWQSDVPILFLTARGEEWDKVKGLKLGGDDYIVKPFSPGELIARIEAVMRRA 123

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N     GP+ +   GR   V GE   L  +E  +L +L  +RG+  ++ ++ + ++
Sbjct: 124 YHAGNHDLSFGPLTIDERGRKVTVDGEPLILTLKEFDLLLFLAKHRGQVFSREELLAKVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D       V++HI  LR KL+    F  + +   +GY  + +
Sbjct: 184 G-YDYTGNVRTVDTHIKTLRMKLKQASEF--IHTVWGIGYKFEVS 225


>gi|163802439|ref|ZP_02196332.1| recombination associated protein [Vibrio sp. AND4]
 gi|159173740|gb|EDP58555.1| recombination associated protein [Vibrio sp. AND4]
          Length = 229

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEAIDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|15800125|ref|NP_286137.1| transcriptional regulator PhoB [Escherichia coli O157:H7 EDL933]
 gi|15829703|ref|NP_308476.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128384|ref|NP_414933.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|82542888|ref|YP_406835.1| transcriptional regulator PhoB [Shigella boydii Sb227]
 gi|89107269|ref|AP_001049.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           W3110]
 gi|91209466|ref|YP_539452.1| transcriptional regulator PhoB [Escherichia coli UTI89]
 gi|117622660|ref|YP_851573.1| transcriptional regulator PhoB [Escherichia coli APEC O1]
 gi|157154834|ref|YP_001461578.1| transcriptional regulator PhoB [Escherichia coli E24377A]
 gi|157159917|ref|YP_001457235.1| transcriptional regulator PhoB [Escherichia coli HS]
 gi|168749852|ref|ZP_02774874.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4113]
 gi|168756932|ref|ZP_02781939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4401]
 gi|168761596|ref|ZP_02786603.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4501]
 gi|168768341|ref|ZP_02793348.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776304|ref|ZP_02801311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4196]
 gi|168783256|ref|ZP_02808263.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4076]
 gi|168786237|ref|ZP_02811244.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC869]
 gi|168800273|ref|ZP_02825280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC508]
 gi|170021229|ref|YP_001726183.1| transcriptional regulator PhoB [Escherichia coli ATCC 8739]
 gi|170079985|ref|YP_001729305.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170684203|ref|YP_001742532.1| transcriptional regulator PhoB [Escherichia coli SMS-3-5]
 gi|170768000|ref|ZP_02902453.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia albertii TW07627]
 gi|187733926|ref|YP_001879107.1| transcriptional regulator PhoB [Shigella boydii CDC 3083-94]
 gi|188493884|ref|ZP_03001154.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 53638]
 gi|191166743|ref|ZP_03028570.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B7A]
 gi|191173531|ref|ZP_03035058.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli F11]
 gi|193065166|ref|ZP_03046239.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E22]
 gi|193068711|ref|ZP_03049672.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E110019]
 gi|194428827|ref|ZP_03061362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B171]
 gi|194432677|ref|ZP_03064963.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1012]
 gi|194438843|ref|ZP_03070928.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 101-1]
 gi|195938540|ref|ZP_03083922.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807385|ref|ZP_03249722.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4206]
 gi|208815127|ref|ZP_03256306.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4045]
 gi|208823163|ref|ZP_03263481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398675|ref|YP_002269037.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4115]
 gi|209917610|ref|YP_002291694.1| transcriptional regulator PhoB [Escherichia coli SE11]
 gi|215485480|ref|YP_002327911.1| transcriptional regulator PhoB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326124|ref|ZP_03442208.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. TW14588]
 gi|218552961|ref|YP_002385874.1| transcriptional regulator PhoB [Escherichia coli IAI1]
 gi|218557308|ref|YP_002390221.1| transcriptional regulator PhoB [Escherichia coli S88]
 gi|218688261|ref|YP_002396473.1| transcriptional regulator PhoB [Escherichia coli ED1a]
 gi|218693859|ref|YP_002401526.1| transcriptional regulator PhoB [Escherichia coli 55989]
 gi|218698697|ref|YP_002406326.1| transcriptional regulator PhoB [Escherichia coli IAI39]
 gi|218703680|ref|YP_002411199.1| transcriptional regulator PhoB [Escherichia coli UMN026]
 gi|227884595|ref|ZP_04002400.1| transcriptional regulator PhoB [Escherichia coli 83972]
 gi|238899687|ref|YP_002925483.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BW2952]
 gi|253774616|ref|YP_003037447.1| transcriptional regulator PhoB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160466|ref|YP_003043574.1| transcriptional regulator PhoB [Escherichia coli B str. REL606]
 gi|254791577|ref|YP_003076414.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020366|ref|ZP_05434231.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|256023984|ref|ZP_05437849.1| transcriptional regulator PhoB [Escherichia sp. 4_1_40B]
 gi|260842597|ref|YP_003220375.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str.
           12009]
 gi|260853619|ref|YP_003227510.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str.
           11368]
 gi|260866558|ref|YP_003232960.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str.
           11128]
 gi|261223875|ref|ZP_05938156.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256411|ref|ZP_05948944.1| DNA-binding response regulator PhoB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281302|ref|YP_003498120.1| Positive response regulator for pho regulon [Escherichia coli
           O55:H7 str. CB9615]
 gi|293403516|ref|ZP_06647607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli FVEC1412]
 gi|293408543|ref|ZP_06652382.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B354]
 gi|293413651|ref|ZP_06656300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B185]
 gi|293418465|ref|ZP_06660900.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B088]
 gi|298379128|ref|ZP_06989009.1| transcriptional regulator PhoB [Escherichia coli FVEC1302]
 gi|300820364|ref|ZP_07100516.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 119-7]
 gi|300900462|ref|ZP_07118630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 198-1]
 gi|300903338|ref|ZP_07121266.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 84-1]
 gi|300918223|ref|ZP_07134829.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 115-1]
 gi|300924116|ref|ZP_07140109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 182-1]
 gi|300930309|ref|ZP_07145721.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 187-1]
 gi|300936383|ref|ZP_07151311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 21-1]
 gi|300947953|ref|ZP_07162099.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 116-1]
 gi|300957961|ref|ZP_07170127.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 175-1]
 gi|300988101|ref|ZP_07178538.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 45-1]
 gi|300997414|ref|ZP_07181754.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 200-1]
 gi|301025440|ref|ZP_07188990.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 69-1]
 gi|301025776|ref|ZP_07189288.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 196-1]
 gi|301049597|ref|ZP_07196549.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 185-1]
 gi|301301545|ref|ZP_07207680.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 124-1]
 gi|301330743|ref|ZP_07223344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 78-1]
 gi|301647317|ref|ZP_07247131.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 146-1]
 gi|306813135|ref|ZP_07447328.1| transcriptional regulator PhoB [Escherichia coli NC101]
 gi|307137041|ref|ZP_07496397.1| transcriptional regulator PhoB [Escherichia coli H736]
 gi|307312226|ref|ZP_07591862.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309794878|ref|ZP_07689299.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 145-7]
 gi|312964580|ref|ZP_07778836.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 2362-75]
 gi|312970492|ref|ZP_07784673.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1827-70]
 gi|331640913|ref|ZP_08342048.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H736]
 gi|331645570|ref|ZP_08346674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M605]
 gi|331651327|ref|ZP_08352352.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M718]
 gi|331661771|ref|ZP_08362694.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA143]
 gi|331666746|ref|ZP_08367620.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA271]
 gi|331671945|ref|ZP_08372741.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA280]
 gi|331676064|ref|ZP_08376776.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H591]
 gi|331681792|ref|ZP_08382425.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H299]
 gi|332281544|ref|ZP_08393957.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|84029275|sp|P0AFJ6|PHOB_ECO57 RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|84029276|sp|P0AFJ5|PHOB_ECOLI RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|12513245|gb|AAG54745.1|AE005219_1 positive response regulator for pho regulon, sensor is PhoR (or
           CreC) [Escherichia coli O157:H7 str. EDL933]
 gi|42388|emb|CAA27659.1| unnamed protein product [Escherichia coli]
 gi|1657595|gb|AAB18123.1| phosphate regulon transcriptional regulatory protein phoB
           [Escherichia coli str. K-12 substr. MG1655]
 gi|1786599|gb|AAC73502.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13359906|dbj|BAB33872.1| positive response regulator for pho regulon PhoB [Escherichia coli
           O157:H7 str. Sakai]
 gi|16209152|gb|AAL09901.1| PhoB [CRIM plasmid pAH150]
 gi|81244299|gb|ABB65007.1| positive response regulator for pho regulon [Shigella boydii Sb227]
 gi|85674539|dbj|BAE76179.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K12 substr.
           W3110]
 gi|91071040|gb|ABE05921.1| positive response regulator for pho regulon [Escherichia coli
           UTI89]
 gi|115511784|gb|ABI99858.1| positive response regulator for pho regulon [Escherichia coli APEC
           O1]
 gi|157065597|gb|ABV04852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli HS]
 gi|157076864|gb|ABV16572.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E24377A]
 gi|169756157|gb|ACA78856.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169887820|gb|ACB01527.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170123488|gb|EDS92419.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia albertii TW07627]
 gi|170521921|gb|ACB20099.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli SMS-3-5]
 gi|187430918|gb|ACD10192.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii CDC 3083-94]
 gi|187768306|gb|EDU32150.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4196]
 gi|188015917|gb|EDU54039.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4113]
 gi|188489083|gb|EDU64186.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 53638]
 gi|188999370|gb|EDU68356.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4076]
 gi|189356009|gb|EDU74428.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4401]
 gi|189362392|gb|EDU80811.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4486]
 gi|189368045|gb|EDU86461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4501]
 gi|189373726|gb|EDU92142.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC869]
 gi|189377396|gb|EDU95812.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC508]
 gi|190903254|gb|EDV62976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B7A]
 gi|190906240|gb|EDV65852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli F11]
 gi|192927140|gb|EDV81761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E22]
 gi|192958074|gb|EDV88516.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E110019]
 gi|194413130|gb|EDX29417.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B171]
 gi|194419238|gb|EDX35321.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1012]
 gi|194422137|gb|EDX38139.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 101-1]
 gi|208727186|gb|EDZ76787.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4206]
 gi|208731775|gb|EDZ80463.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4045]
 gi|208737356|gb|EDZ85040.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160075|gb|ACI37508.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4115]
 gi|209744234|gb|ACI70424.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744236|gb|ACI70425.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744238|gb|ACI70426.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744240|gb|ACI70427.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744242|gb|ACI70428.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209910869|dbj|BAG75943.1| two-component response regulator [Escherichia coli SE11]
 gi|213521171|gb|ACJ50526.1| PhoB [Escherichia coli]
 gi|215263552|emb|CAS07882.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322345|gb|EEC30769.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. TW14588]
 gi|218350591|emb|CAU96281.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli 55989]
 gi|218359729|emb|CAQ97270.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli IAI1]
 gi|218364077|emb|CAR01742.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli S88]
 gi|218368683|emb|CAR16423.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli IAI39]
 gi|218425825|emb|CAR06631.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli ED1a]
 gi|218430777|emb|CAR11651.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli UMN026]
 gi|222032194|emb|CAP74933.1| Phosphate regulon transcriptional regulatory protein [Escherichia
           coli LF82]
 gi|227838681|gb|EEJ49147.1| transcriptional regulator PhoB [Escherichia coli 83972]
 gi|238860869|gb|ACR62867.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BW2952]
 gi|242376177|emb|CAQ30868.1| PhoB transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253325660|gb|ACT30262.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972367|gb|ACT38038.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli B str. REL606]
 gi|253976576|gb|ACT42246.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BL21(DE3)]
 gi|254590977|gb|ACT70338.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O157:H7 str.
           TW14359]
 gi|257752268|dbj|BAI23770.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str.
           11368]
 gi|257757744|dbj|BAI29241.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str.
           12009]
 gi|257762914|dbj|BAI34409.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str.
           11128]
 gi|260450414|gb|ACX40836.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli DH1]
 gi|281177569|dbj|BAI53899.1| two-component response regulator [Escherichia coli SE15]
 gi|284920205|emb|CBG33264.1| phosphate regulon two-component system, response regulator
           [Escherichia coli 042]
 gi|290761175|gb|ADD55136.1| Positive response regulator for pho regulon [Escherichia coli
           O55:H7 str. CB9615]
 gi|291324993|gb|EFE64408.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B088]
 gi|291429369|gb|EFF02389.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli FVEC1412]
 gi|291433709|gb|EFF06682.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B185]
 gi|291471721|gb|EFF14204.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B354]
 gi|294490411|gb|ADE89167.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli IHE3034]
 gi|298280241|gb|EFI21745.1| transcriptional regulator PhoB [Escherichia coli FVEC1302]
 gi|299879979|gb|EFI88190.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 196-1]
 gi|300298642|gb|EFJ55027.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 185-1]
 gi|300304233|gb|EFJ58753.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 200-1]
 gi|300315335|gb|EFJ65119.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 175-1]
 gi|300356031|gb|EFJ71901.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 198-1]
 gi|300396025|gb|EFJ79563.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 69-1]
 gi|300404633|gb|EFJ88171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 84-1]
 gi|300407515|gb|EFJ91053.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 45-1]
 gi|300414608|gb|EFJ97918.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 115-1]
 gi|300419669|gb|EFK02980.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 182-1]
 gi|300452489|gb|EFK16109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 116-1]
 gi|300458489|gb|EFK21982.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 21-1]
 gi|300461769|gb|EFK25262.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 187-1]
 gi|300527149|gb|EFK48218.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 119-7]
 gi|300843042|gb|EFK70802.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 124-1]
 gi|300843315|gb|EFK71075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 78-1]
 gi|301074542|gb|EFK89348.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 146-1]
 gi|305853898|gb|EFM54337.1| transcriptional regulator PhoB [Escherichia coli NC101]
 gi|306907728|gb|EFN38230.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307552303|gb|ADN45078.1| positive response regulator for pho regulon [Escherichia coli ABU
           83972]
 gi|307628132|gb|ADN72436.1| transcriptional regulator PhoB [Escherichia coli UM146]
 gi|308121531|gb|EFO58793.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 145-7]
 gi|309700660|emb|CBI99956.1| phosphate regulon two-component system, response regulator
           [Escherichia coli ETEC H10407]
 gi|310337141|gb|EFQ02279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1827-70]
 gi|312290814|gb|EFR18691.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 2362-75]
 gi|312944976|gb|ADR25803.1| transcriptional regulator PhoB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315059676|gb|ADT74003.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli W]
 gi|315135081|dbj|BAJ42240.1| positive response regulator for pho regulon [Escherichia coli DH1]
 gi|315256222|gb|EFU36190.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 85-1]
 gi|315294171|gb|EFU53522.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 153-1]
 gi|315616662|gb|EFU97279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 3431]
 gi|320173784|gb|EFW48967.1| transcriptional regulator PhoB [Shigella dysenteriae CDC 74-1112]
 gi|320186028|gb|EFW60773.1| transcriptional regulator PhoB [Shigella flexneri CDC 796-83]
 gi|320192810|gb|EFW67450.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320197165|gb|EFW71782.1| transcriptional regulator PhoB [Escherichia coli WV_060327]
 gi|320201640|gb|EFW76216.1| transcriptional regulator PhoB [Escherichia coli EC4100B]
 gi|320638387|gb|EFX08101.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           G5101]
 gi|320643767|gb|EFX12890.1| transcriptional regulator PhoB [Escherichia coli O157:H- str.
           493-89]
 gi|320649118|gb|EFX17696.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. H
           2687]
 gi|320656011|gb|EFX23927.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662568|gb|EFX29957.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665138|gb|EFX32231.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152134|gb|EFZ38427.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli EPECa14]
 gi|323160495|gb|EFZ46443.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E128010]
 gi|323164189|gb|EFZ49996.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           sonnei 53G]
 gi|323170479|gb|EFZ56129.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli LT-68]
 gi|323178339|gb|EFZ63917.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1180]
 gi|323191316|gb|EFZ76579.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli RN587/1]
 gi|323379758|gb|ADX52026.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli KO11]
 gi|323938583|gb|EGB34832.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E1520]
 gi|323943204|gb|EGB39360.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E482]
 gi|323945298|gb|EGB41354.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H120]
 gi|323952990|gb|EGB48858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H252]
 gi|323963384|gb|EGB58946.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H489]
 gi|323965348|gb|EGB60806.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M863]
 gi|323972248|gb|EGB67458.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA007]
 gi|323976121|gb|EGB71214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TW10509]
 gi|324010107|gb|EGB79326.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 57-2]
 gi|324010710|gb|EGB79929.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 60-1]
 gi|324016661|gb|EGB85880.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 117-3]
 gi|324116882|gb|EGC10795.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E1167]
 gi|326341157|gb|EGD64949.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1044]
 gi|326346067|gb|EGD69806.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1125]
 gi|327254715|gb|EGE66331.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli STEC_7v]
 gi|330910192|gb|EGH38702.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Escherichia coli AA86]
 gi|331037711|gb|EGI09931.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H736]
 gi|331045732|gb|EGI17858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M605]
 gi|331051068|gb|EGI23120.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M718]
 gi|331060193|gb|EGI32157.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA143]
 gi|331065970|gb|EGI37854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA271]
 gi|331070934|gb|EGI42293.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA280]
 gi|331076122|gb|EGI47404.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H591]
 gi|331080994|gb|EGI52159.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H299]
 gi|332085836|gb|EGI91000.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 155-74]
 gi|332094547|gb|EGI99593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii 5216-82]
 gi|332098617|gb|EGJ03583.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii 3594-74]
 gi|332103896|gb|EGJ07242.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|332341761|gb|AEE55095.1| transcriptional regulator protein PhoB [Escherichia coli UMNK88]
          Length = 229

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima]
          Length = 239

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + + EE L+ +  EDV      ++  G    
Sbjct: 6   ILVVDDDPAILELVGYNLSKEGYEV--LKAYDGEEALKIANDEDVDMFIVDIMLPGIDGF 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IR    +   P+I +S        +   + G DD + KP   RE+LARV AI+RR
Sbjct: 64  ELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 123

Query: 119 LKVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           L  +    E          + +  +  + +V+G+   L   E  +L +L  N GK  ++ 
Sbjct: 124 LSTATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 232


>gi|30261228|ref|NP_843605.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47526390|ref|YP_017739.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184060|ref|YP_027312.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65318498|ref|ZP_00391457.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165871824|ref|ZP_02216467.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635393|ref|ZP_02393707.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640233|ref|ZP_02398499.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688103|ref|ZP_02879315.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707629|ref|ZP_02898081.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177654173|ref|ZP_02936146.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566754|ref|ZP_03019671.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227816035|ref|YP_002816044.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229603977|ref|YP_002865651.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254682711|ref|ZP_05146572.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254734129|ref|ZP_05191842.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740227|ref|ZP_05197919.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753567|ref|ZP_05205603.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254758664|ref|ZP_05210691.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254842|gb|AAP25091.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501538|gb|AAT30214.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177987|gb|AAT53363.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712401|gb|EDR17935.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511834|gb|EDR87214.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529221|gb|EDR91974.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127404|gb|EDS96279.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667998|gb|EDT18749.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172080880|gb|EDT65960.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562306|gb|EDV16274.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006114|gb|ACP15857.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229268385|gb|ACQ50022.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 234

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +     +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++       ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWEAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|302384891|ref|YP_003820713.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195519|gb|ADL03090.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 235

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 92/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +  + +   EE L    +  +  +   ++  G   L
Sbjct: 7   ILVVDDEKEIADLVEIYLVSDGYKV--YKANNAEEGLGVLEKNQIHLVLLDIMMPGMDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  + +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 65  QMCKKIRETNNIPIIMLSAKSTDLDKILGLGTGADDYVTKPFNPLELTARVKSQLRRYTQ 124

Query: 122 SN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N          N      + +  D     V GE   L   E  IL  L +N G+  +  
Sbjct: 125 LNPNSAVNEAVKNEIAIRGLTINKDNHKVTVYGEEIKLTPIEFDILYLLASNPGRVFSTD 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +IF  ++         N V  HI +LR K++        + +   +GY I+
Sbjct: 185 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIE 234


>gi|153834652|ref|ZP_01987319.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           harveyi HY01]
 gi|156973339|ref|YP_001444246.1| response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|269962450|ref|ZP_06176800.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3]
 gi|148868964|gb|EDL68018.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           harveyi HY01]
 gi|156524933|gb|ABU70019.1| hypothetical protein VIBHAR_01026 [Vibrio harveyi ATCC BAA-1116]
 gi|269832946|gb|EEZ87055.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3]
          Length = 229

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEAVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|240146929|ref|ZP_04745530.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
 gi|257200912|gb|EEU99196.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
          Length = 234

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 99/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  + EE L++  + + + I   L+  G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFDTKIVN--DGEEALKAFEQYNPNLILLDLMLPGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA + VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREVRAKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        +   + V         +     +P +E  +L +L ++  +   + Q+
Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              I+G ++   +   V+ H+ +LR+K+++   +    +   +GY  + 
Sbjct: 185 LDHIWG-YEYIGDTRTVDVHVKRLREKIKDNDSWSL-STVWGIGYKFEV 231


>gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 96/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G         +    L +    D+  ++  L       L
Sbjct: 5   ILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLAADDSFDLIVLDLMLPE--MDGL 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR  
Sbjct: 63  EVCKSLRQLKVSTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRSA 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +   ++   G + ++ +  +  +  E   L  +E  +L YL  + G+ + + 
Sbjct: 123 VPKQDKKEEPETSKVILGDVHIYPENYEIFLHDEPLELTPKEFELLLYLTNHPGRVLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           Q+ +A++  ++   +  +V+ HIS LR+K+         + + R LGY ++
Sbjct: 183 QLLNAVWN-YEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKLE 232


>gi|310814679|ref|YP_003962643.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ketogulonicigenium vulgare Y25]
 gi|308753414|gb|ADO41343.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ketogulonicigenium vulgare Y25]
          Length = 229

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    ++     F  +G  +    + +      +    D+  ++  L   G   +
Sbjct: 8   ILVIEDEPAQREVLAYNFEAEGYRVSTAPNGDSALLQLAEEPPDLIVLDWMLP--GVSGI 65

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R I+A ++    P+I +S        +   ++G DD V KP    E+LAR  A  RR
Sbjct: 66  EICRQIKARAETRAIPVIMLSARSEEGDKVRGLETGADDYVTKPYSITELLARARAQLRR 125

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          I +  +       G    L   E R+L  LM   G+  ++ Q+   
Sbjct: 126 TRPATIGGVLRFEDITLDGETHRVTRDGNELRLGPTEFRLLTTLMERPGRVWSREQLLDR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V+   V+ H+ +LRK L    G DP+ + R  GY++
Sbjct: 186 VWGR-DIYVDSRTVDVHVGRLRKALMIHGGTDPLRTVRGAGYAL 228


>gi|161504418|ref|YP_001571530.1| transcriptional regulator PhoB [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160865765|gb|ABX22388.1| hypothetical protein SARI_02529 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 229

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 99/229 (43%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G     F  +E E++  +  +      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNG-----FQPVEAEDYDSAVNKLNEPWPDLILLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L+  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ 
Sbjct: 58  GGSGLQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +               +   E ++L + M +  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPGSHRVMTGDNPLDMGPTEFKLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 178 QLLNHVWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|225376457|ref|ZP_03753678.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
           16841]
 gi|225211833|gb|EEG94187.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
           16841]
          Length = 233

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 99/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  + EE L +  + + + I   L+  G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFDTKIVN--DGEEALTAFEQYNPNLILLDLMLPGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA + VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREVRAKANVPIIMLSAKGEIFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQP 124

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        +   + +          G+   +P +E  +L +L ++  +   + Q+
Sbjct: 125 VKTEEVIPDLKCVKYEDLVINLSNYSVIYMGQAVDMPPKELELLYFLASSPNQVFTREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              I+G ++   +   V+ H+ +LR+K+++   +    +   +GY  + 
Sbjct: 185 LDHIWG-YEYIGDTRTVDVHVKRLREKIKDHANWSLA-TVWGIGYKFEV 231


>gi|320181620|gb|EFW56535.1| transcriptional regulator PhoB [Shigella boydii ATCC 9905]
          Length = 229

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISSMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|222110688|ref|YP_002552952.1| winged helix family two component heavy metal response
           transcriptional regulator PhoB [Acidovorax ebreus TPSY]
 gi|221730132|gb|ACM32952.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 235

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G         E  +    +   DV  ++  L   G+  L+
Sbjct: 8   LIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWMLP--GQSGLQ 65

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  RA S   Q+P++ ++        +   D+G DD + KP   +E+LAR+ A+ RR 
Sbjct: 66  LARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + + +       QG+   +   E ++L YLM +  +  ++ Q+   I
Sbjct: 126 APEQVSDSVSIGELVLDAATYRVSYQGQQLKVGPTEFKLLHYLMKHPERVHSRAQLLDKI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L   +G   V++ R  GY +
Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALG--VGGAMVETVRGAGYRL 225


>gi|110679874|ref|YP_682881.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter denitrificans OCh 114]
 gi|109455990|gb|ABG32195.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter denitrificans OCh 114]
          Length = 229

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D    ++        +G ++    + E    L      D+  ++  +       
Sbjct: 7   LVLVVEDEPAQREVLAYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPN--LSG 64

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R ++  S+    P+I +S        +   ++G DD V KP    E++ARV +  R
Sbjct: 65  IEVCRRLKTRSETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSIVELMARVRSQLR 124

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++ +    + E   I + +             L   E R+L   M   G+  ++ Q+  
Sbjct: 125 RVRPAATGGQLEYEDIVLNAASHRVSRGENELKLGPTEFRLLSTFMEKPGRVFSREQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 185 RVWGR-DIYVDTRTVDVHIGRLRKALTQFGGSDPLRTVRGAGYAL 228


>gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 264

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +E   + +  E LQ +A      +   +   G   L
Sbjct: 35  ILVVDDEPAVREALRRSLVFEGYGVEV--AADGHEALQKAAATPPDLVVLDIQMPGMDGL 92

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 93  TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 152

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +              G +R+    R+    G    L R E  +LE  +A+  + + + Q
Sbjct: 153 YAVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQ 212

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 213 ILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 259


>gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 239

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLP--KMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +                   +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVSEAPDEESIIIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 DQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLE 233


>gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 229

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  +  D+  ++  L   G    +
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVMLP--GMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCKQLRAKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V +     GP+R+  +     V G+   LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 EAATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+    G    + + R LGY ++
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRAKIEGDPGKPKHLVTVRGLGYKLE 228


>gi|291537897|emb|CBL11008.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 99/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  + EE L++  + + + I   L+  G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFDTKIVN--DGEEALKAFEQYNPNLILLDLMLPGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA + VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREVRAKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        +   + V         +     +P +E  +L +L ++  +   + Q+
Sbjct: 125 VKIEEPASELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              I+G ++   +   V+ H+ +LR+K+++   +    +   +GY  + 
Sbjct: 185 LDHIWG-YEYIGDTRTVDVHVKRLREKIKDNDSWSL-STVWGIGYKFEV 231


>gi|317130982|ref|YP_004097264.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475930|gb|ADU32533.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 235

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +           + +    D+  ++  L  +    +
Sbjct: 6   ILVVDDEQPIADILKFGLEKDGYEVICAYDGNEAIEMTNKHEPDLILLDIMLPYQ--DGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR + 
Sbjct: 64  EVCREVRKKFDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQK 123

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S          + G + +  D      +GE   L  RE  ++ YL  + G+ + +  +  
Sbjct: 124 SKEPDTEKKNIQIGALLIQPDAYLVSKRGEPIELTHREFELVYYLAKHIGQVMTREHLLQ 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           A++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 AVWG-YDYFGDVRTVDVTVRRLREKVEDDPSNPTWIITRRGVGYYL 228


>gi|307547006|ref|YP_003899485.1| phosphate regulon transcriptional regulator PhoB [Halomonas
           elongata DSM 2581]
 gi|307219030|emb|CBV44300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Halomonas elongata DSM 2581]
          Length = 229

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++            +   ++ +    +    + D+  ++  +   G   +E
Sbjct: 7   LIVDDEAPIREMIAVALEMADYHVLEADNAQAAHAMIVDHQPDLVLLDWMMP--GTSGIE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++     +++P+I ++        +   D+G DD + KP   RE++AR+ A+ RR 
Sbjct: 65  LARRLKREETTAEMPIIMLTAKSEEDNKIQGLDAGADDYITKPFSPRELVARLKAVLRRS 124

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  E   + +        V G    +   E R+L++ M ++ +   + Q+   +
Sbjct: 125 TPHGVEDPVEVDGLLLDPVSHRVSVDGNSLEVGPTEYRLLQFFMTHQERAYTRGQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L +      + + R  GY  
Sbjct: 185 WGG-NVYVEERTVDVHIRRLRKALGDPY-QQLIQTVRGTGYRF 225


>gi|21388712|dbj|BAC00821.1| phosphate regulon transcriptional regulatory protein [Rhodobacter
           sphaeroides f. sp. denitrificans]
          Length = 230

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D    ++        +G  +    + +    L   A  DV  ++  L       
Sbjct: 8   VVLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSV--SG 65

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +++      VP+I +S        +   ++G DD V KP    E++ARV +  R
Sbjct: 66  IEVCRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLR 125

Query: 118 RLKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R + S+     E   IR+  +       G++  L   E R+L   M   G+  ++ Q+  
Sbjct: 126 RARPSSVGLTLEFEDIRLDPETHKVHRGGQLLKLGPTEFRLLSTFMEKPGRVWSREQLLD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 186 RVWGR-DIYVDSRTVDVHVGRLRKALCLHGGEDPVRTVRGAGYAL 229


>gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 238

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       S   D+  ++  L       L
Sbjct: 6   ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLP--KIDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 123

Query: 122 SNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +N             E G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 124 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 184 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 232


>gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G      N              D+  ++  L   G    E
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEASVVNDGAQALSTFDRVSPDIVLLDLMLP--GMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  ICKALRTRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDL 122

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E GP+R+  +     V GE   LP +E  +LEYL+ N G+ + + Q+   
Sbjct: 123 AEEDLDIGILEAGPVRMDVERHIVAVNGEQITLPLKEFDLLEYLLRNAGRVLTRGQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEPDPANPKHLITVRGLGYKLE 227


>gi|187929100|ref|YP_001899587.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241663308|ref|YP_002981668.1| two component transcriptional regulator PhoB [Ralstonia pickettii
           12D]
 gi|309782477|ref|ZP_07677201.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ralstonia sp. 5_7_47FAA]
 gi|187725990|gb|ACD27155.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240865335|gb|ACS62996.1| two component transcriptional regulator PhoB, winged helix family
           [Ralstonia pickettii 12D]
 gi|308918814|gb|EFP64487.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ralstonia sp. 5_7_47FAA]
          Length = 237

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 99/233 (42%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E    L S    D+  ++  L   G+  +
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLP--GKSGV 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              + +RA+    Q+P+I ++     Q  +   DSG DD V KP   +E+LAR+ A+ RR
Sbjct: 63  MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDSGADDYVTKPFSPKELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAK 170
              +++++      +++                     L   E R+L +LM +  +  ++
Sbjct: 123 RAPQLTDDVVAINGLKLDPATHRVTATNVEAENPIKLDLGPTEFRLLHFLMTHPERVHSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +Q+   ++G     VEE  V+ HI +LR  L      + +++ R  GY +  N
Sbjct: 183 SQLLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234


>gi|229095884|ref|ZP_04226862.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229101998|ref|ZP_04232711.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229114837|ref|ZP_04244250.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228668529|gb|EEL23958.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228681385|gb|EEL35549.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228687508|gb|EEL41408.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 218

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLESDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  G+   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGDPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|228920111|ref|ZP_04083460.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839567|gb|EEM84859.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 218

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE+  L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|156740374|ref|YP_001430503.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231702|gb|ABU56485.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 230

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +A    DG ++      E    L  + + D+  ++  L   G   L
Sbjct: 5   ILVVEDEEPILNLVVAYLKADGFAVHTARDGESALMLAQTLQPDLIVLDLLLP--GMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++        +     G DD + KP   RE++ARV AI RR + 
Sbjct: 63  EICRRLQRDGGPYVLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRRH 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       +       +++    R+ + +G    L  RE  +L  L A  G+   + Q+ 
Sbjct: 123 TSVASPAESALLTFRDLQIDVARREVQRRGVPVTLTAREFDLLYTLAAMPGRVFTREQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G  D    + VV+ HIS LR+KL +       + + R +GY  
Sbjct: 183 ERVWG-HDFDGVDRVVDVHISLLRRKLEDDPTEPTLIQTVRGVGYKF 228


>gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 237

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       S   D+  ++  L       L
Sbjct: 5   ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLP--KIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 122

Query: 122 SNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +N             E G + +  D      +GE   L  RE  +L YL  + G+ + + 
Sbjct: 123 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 231


>gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. 230613]
          Length = 232

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G +     +      +    + D+  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLP--GMDGY 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR  + +   P+I I+        +   + G DD + KP   RE++ARV A+ RR
Sbjct: 64  EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               N  +++   G I V  +       GE   L  +E  +LE L+ N+GK + +  +  
Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            I+G ++   E   V+ HI  LRKK+ +       +++ R +GY  +
Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229


>gi|298293994|ref|YP_003695933.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296930505|gb|ADH91314.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++     +  E     +  D+  ++  L   G   +
Sbjct: 5   ILIVEDEEPLTLLLRYNLESEGYAVDSVGRGDEAETRLRESVPDLLILDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA  +    P++ ++        +    +G DD V KP    E++ARV A+ RR
Sbjct: 63  ELCRRLRARPETERMPILMLTARGEETERVRGLATGADDYVVKPFSVPELVARVRALLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K    +     G I +  + +     G    L   E R+LE+LM + G+  ++ Q+   
Sbjct: 123 AKPEHISTLLRAGDIELDRETKRVHRAGRELHLGPTEFRLLEFLMQSPGRVYSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ H+ +LRK L      DP+ + R  GYS +
Sbjct: 183 VWGQ-DVYIDERTVDVHVGRLRKALNRPRQPDPIRTVRGSGYSFN 226


>gi|238765163|ref|ZP_04626095.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           kristensenii ATCC 33638]
 gi|238696597|gb|EEP89382.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           kristensenii ATCC 33638]
          Length = 279

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 55  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLP--GGSGI 112

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 113 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 172

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 173 ISPMAVEEVIEMQGLSLDPSSHRVMSNEQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 232

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 233 VWGT-NVYVEDRTVDVHIRRLRKALETDGHDRMVQTVRGTGYRF 275


>gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 229

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    E L +  R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAV--AATGPEALDTFDRNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRSLRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRQGDV 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++ +     GP+R+  D     V+G+   LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EELESAVLAAGPVRMDVDRHIVAVRGQQVQLPLKEFELLEVLLRNAGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  D
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKVESDPSNPRCILTVRGLGYKFD 225


>gi|71282474|ref|YP_267951.1| phosphate regulon response regulator PhoB [Colwellia
           psychrerythraea 34H]
 gi|71148214|gb|AAZ28687.1| phosphate regulon response regulator PhoB [Colwellia
           psychrerythraea 34H]
          Length = 233

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G +      +E           D+  ++  L   G   +
Sbjct: 5   ILVVEDETPIREMISFVLDQNGFNAIEACDIEQALAKIHEPYPDLILLDWMLP--GGTGV 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + ++ +     +P+I ++        +  F++GVDD V KP   +E++AR+ A+ RR
Sbjct: 63  SLAKKLKQNEYTRNIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKELIARIKAVIRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  ++     +   +++        + G    L   E R+L + M +  +  ++ Q+   
Sbjct: 123 VSPTSLEEEVDFHGLKLDPVAHRVAINGNSLDLGPTEFRLLHFFMTHTERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK +  +   D V + R  GY  
Sbjct: 183 VWGT-NIYVEDRTVDVHIRRLRKAISGEGHEDFVQTVRGAGYRF 225


>gi|161525185|ref|YP_001580197.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350076|ref|YP_001945704.1| OmpR family two-component system phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|160342614|gb|ABX15700.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189334098|dbj|BAG43168.1| OmpR family two-component system phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 233

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 5   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLP--GKSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDP--EVQGEVF--PLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+         +  G      L   E R+L + M +  +  ++TQ
Sbjct: 123 RAPQLTEDVVSINGLRLDPATHRVAAQTNGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|15614143|ref|NP_242446.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174197|dbj|BAB05299.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 238

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +   +E   + + +E L+ +   D   I   L+      +
Sbjct: 7   ILVVDDEDRIRNLLKMYLEREAYDVE--EASDGKEALEKALAFDYDVILLDLMMPEMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCQKLRKQKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSS 124

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D     V  +   L  +E  +L YL  +  K  ++ Q
Sbjct: 125 TKFLQTDTQAKDVLVFPHLSIDNDAHRVTVADQEINLTPKEYELLYYLAQSPDKVFSREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  +D   +   V++HI +LR+KL   +      + +   +GY  + 
Sbjct: 185 LLKDVWN-YDFFGDLRTVDTHIKRLREKLNRVSPQAASMISTVWGVGYKFEV 235


>gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
 gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
          Length = 238

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++  G       +G  +E     + EE ++ +       I   L+      L
Sbjct: 14  ILVVDDEKVLVKGIKFNLESEGYQVE--TGCDGEEAVELARSGGFDLIILDLMMPKIDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +  F+ G DD + KP +  E+ ARV A+ RR  +
Sbjct: 72  QACMRIREFSNVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRRAGM 131

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +       R   G I + +D R          L  +E  ++E LM N G+  ++  + + 
Sbjct: 132 AAQKEKKARLTAGHIVIDADERSAWKGETPVDLTAKEFDLIELLMRNPGRVYSRENLLNV 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++ A +   V+ H+ +LR+KL  +    + + +K  +GY  
Sbjct: 192 VWG-YEYAGDYRTVDVHVRRLREKLELDPARPEYILTKWGVGYYF 235


>gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
 gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
          Length = 232

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G +     +      +    + D+  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLP--GMDGY 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR  + +   P+I I+        +   + G DD + KP   RE++ARV A+ RR
Sbjct: 64  EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               N  +++   G I V  +       GE   L  +E  +LE L+ N+GK + +  +  
Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            I+G ++   E   V+ HI  LRKK+ +       +++ R +GY  +
Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229


>gi|226322434|ref|ZP_03797952.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758]
 gi|225209156|gb|EEG91510.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D A +++  +      G    GF   E   + ++ A E    I   ++  GE  
Sbjct: 1   MIFCVEDEANIRELVVYTLETTGFEARGFE--EGTSFFEALAEELPELILLDIMLPGEDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ + ++       +P+I ++   +    +   D+G DD V KP    E+++R+ A+ R
Sbjct: 59  MEILKKLKTSGRTKDIPVIMVTAKGAEYDKVMGLDAGADDYVTKPFGMMELVSRIRAVLR 118

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   K  ++    G IR+     +  V GE   L  +E  +L  LM N+   + + ++  
Sbjct: 119 RTSKKEEDDTYVLGEIRMDRKKHEVTVAGEPVALTLKEYELLRKLMENQNIVLTRDKLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   V+ H+  LR+KL      + +++ R +GY I
Sbjct: 179 EIWG-YDFDGETRTVDVHVRTLRQKLGQAG--EYIETVRGVGYRI 220


>gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G  +      E    L    + DV  ++  L       +E
Sbjct: 6   LVVEDEDALSELLSYNLKKEGFRVSLAADGEEAMMLVEERQPDVVVLDWMLP--KISGIE 63

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R+  +    P+I ++        +   D+G DD + KP   +E+ ARV A+ RR+
Sbjct: 64  VCRRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVLRRI 123

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   + +    G I +               L   E R+L+YLM + G+  ++ Q+  A+
Sbjct: 124 RPGLAEDSVTVGDITIDRVAHRVVRSDLEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  VE   V+ HI +LRK L      DP+ + R  GY+++
Sbjct: 184 WG-SDVYVEARTVDVHIGRLRKALSAGGEHDPIRTVRSAGYALN 226


>gi|332994441|gb|AEF04496.1| putative DNA-binding response regulator PhoB [Alteromonas sp. SN2]
          Length = 229

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 102/228 (44%), Gaps = 18/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGKG 57
           ++++D A +++    +    G     FN +E E++  +  +      D+  ++  L   G
Sbjct: 6   LVVEDEAPIREMLKFVLEQSG-----FNIIEAEDYDIAQEKICEPYPDLILLDWMLP--G 58

Query: 58  EKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              ++L + ++ H     +P+I ++     +  +   D+G DD V KP   +E++AR+ A
Sbjct: 59  GSGVQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELIARIKA 118

Query: 115 IYRRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + RR+  ++N    E   +++           +   +   E ++L + M +  +  ++  
Sbjct: 119 VMRRVTPTSNEEPIEFNGLKLEPVSHRVMANEDPLDMGPTEFKLLHFFMTHPERVYSREL 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G  +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 179 LLDNVWGT-NVYVEDRTVDVHIRRLRKAISRHGHDAMIQTVRGAGYRF 225


>gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 235

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +    + + EE L+    +    I   L+      LE
Sbjct: 6   LVVDDEKPISDIIKFNLEKEGYEV--VTAFDGEEGLEKVESDQPDLIILDLMLPKIDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA    P+I ++   S    +   + G DD V KP  +RE++ARV A  RR    
Sbjct: 64  VAKRVRAKHNTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDAA 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  NN  + G + +  D      +G+   L  RE  +L YL  + G+ + + Q+ 
Sbjct: 124 NTPNAETENNDIKIGALTIHPDAYTVTKRGDNINLTHREFELLHYLAQHIGQVIKREQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLVTRRGVGYYL 229


>gi|227832117|ref|YP_002833824.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184032|ref|ZP_06043453.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453133|gb|ACP31886.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 232

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 106/231 (45%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G  +    + +    L+  A  +V  +   L+  G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDV--LLAPDGPSALEQFAANNVDIVLLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR + 
Sbjct: 62  DVCKQLRTTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGQD 121

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +++            E G +R+  +     V GE   +P +E  +LEYL+ N G+ + + 
Sbjct: 122 ASSEHAEEEPDEQILEGGRVRMDVERHTVLVAGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEAEPSRPQQLVTVRGLGYKFE 231


>gi|30250065|ref|NP_842135.1| response regulator PhoB [Nitrosomonas europaea ATCC 19718]
 gi|30139172|emb|CAD86042.1| possible phoB; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding [Nitrosomonas
           europaea ATCC 19718]
          Length = 240

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 102/230 (44%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + +++       + G +    NS E    + +    D+  ++  L   G+  +E
Sbjct: 6   LVVEDESAIQELIAYNLRNAGYTAVCTNSAEQAAAMVNEVLPDLVLLDWMLP--GKSGIE 63

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R +R       +P+I ++     +  +   ++G DD V KP   RE++AR+ A+ RR 
Sbjct: 64  LARSLRRDPRTKPIPVIMLTARVDERDKVIGLETGADDYVTKPFSPRELIARIKAVLRRS 123

Query: 120 --KVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAK 170
             + S+   + G +++        V         +   L   E R+L +LMA+  +   +
Sbjct: 124 LPEASDEILDIGGVQINPMTHRVTVTDLNDGTHEKELLLSPTEYRLLYFLMAHAERVHTR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   ++G     VE+  V+ HI +LRK L      D V + R  GY  
Sbjct: 184 AQLLDRVWGDH-VFVEDRTVDVHIRRLRKALDVAGKADLVQTVRGAGYRF 232


>gi|295090183|emb|CBK76290.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 230

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +  F +         +   D++ ++  L        
Sbjct: 5   ILIVDDEQEIADLVSLYLTNEGFQVFKFYNAADAWSCIQTENLDLAILDVMLPD--MNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL + IR   Q P+I ++        +     G DD + KP    E++ARV A  RR K 
Sbjct: 63  ELCQKIREKYQYPVIMLTAKGEGIDKITGLTLGADDYITKPFLPLEMVARVKAQLRRYKH 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +++      + + +   +  + G+   L   E  IL  L   +G+ V+  ++F 
Sbjct: 123 YNSGTQTDDVITYSGLVINTKTHECTLNGKALSLTPTEFSILRILCQKKGEVVSSEELFH 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            I+G    +   N +  HI  LRKK+ +       + +    GY I+
Sbjct: 183 EIWGDEYFSKSNNTITVHIRHLRKKMDDSFENPKYIKTVWGCGYKIE 229


>gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8]
 gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8]
 gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62]
 gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 234

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +  F + + EE L+     +   I   L+      L
Sbjct: 4   ILVVDDEKPISEIVKYNLVKEGYEV--FTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + +    G + +  D      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYL 228


>gi|91225176|ref|ZP_01260398.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01]
 gi|254228694|ref|ZP_04922118.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|262395154|ref|YP_003287008.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|269965135|ref|ZP_06179269.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B]
 gi|91190119|gb|EAS76390.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01]
 gi|151938873|gb|EDN57707.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|262338748|gb|ACY52543.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|269830121|gb|EEZ84348.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B]
          Length = 229

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++               +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDAPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|149202581|ref|ZP_01879553.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. TM1035]
 gi|149143863|gb|EDM31897.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. TM1035]
          Length = 229

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D    ++        DG  +   ++ E    + +    D+  ++  +       +E
Sbjct: 9   LLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVAEMPPDIIVLDWMMPNV--SGIE 66

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++  S+   +P+I +S        +   ++G DD V KP    E++ARV A  RR 
Sbjct: 67  VCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRRT 126

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    R E   I + ++        +   L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPATVGERLEYLDIVLDAETHRVTRCEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALCQHGGDDPLRTVRGAGYAL 228


>gi|85703117|ref|ZP_01034221.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. 217]
 gi|85672045|gb|EAQ26902.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. 217]
          Length = 229

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D    ++        DG  +   ++ E    + S    D+  ++  +       +E
Sbjct: 9   LLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVSEMPPDIIVLDWMMPNV--SGIE 66

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++  S+   +P+I +S        +   ++G DD V KP    E++ARV A  RR 
Sbjct: 67  VCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRRT 126

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    R E   I + ++        +   L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPATVGERLEYLDIVLDAETHRVTRSEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALCQYGGEDPLRTVRGAGYAL 228


>gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G      N+             DV  ++  L   G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFDAVVANNGPEALAEFERGGADVVLLDLMLP--GLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R+ S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRSRSSVPIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVLRRRGDV 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  +  E GP+R+  +     V GE   LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 123 EALVESALEAGPVRMDVERHVVSVDGEPVALPLKEFDLLELLLRNAGRVLTRVQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY ++
Sbjct: 183 G-SDYVGDTKTLDVHVKRLRAKIEPDPANPKYLVTVRGLGYKLE 225


>gi|253576379|ref|ZP_04853709.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844272|gb|EES72290.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 238

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  ++     E    L +S    +  ++  L   G   +
Sbjct: 8   ILVVDDEERIRRLLKMYLEKEGYEIDEAEDGETALKLATSNDYGLILLDVMLP--GIDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R     P++ ++        +  F+ G DD V KP   RE++ RV AI RR   
Sbjct: 66  EVCNRLRQVKATPVLMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIMRRASA 125

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++N      + +  D       G+   L  +E  +L YL  +  K  ++ +
Sbjct: 126 TAYLTKESGTSNNIVFPHLVIEHDAHRVTANGQEVSLTPKEYELLHYLAVSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY ++ 
Sbjct: 186 LLKDVWN-YEFFGDLRTVDTHVKRLREKLNKVSPESAAMITTVWGVGYKLEV 236


>gi|56477139|ref|YP_158728.1| phosphate regulon transcriptional regulatory protein phoB
           [Aromatoleum aromaticum EbN1]
 gi|56313182|emb|CAI07827.1| Phosphate regulon transcriptional regulatory protein phoB
           [Aromatoleum aromaticum EbN1]
          Length = 235

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++   A     G  +   +  E        A  D+  ++  L   G   +
Sbjct: 5   ILLVEDELAIQELIAASLSRAGHRVVRASDAEEAAQRLRDALPDLVLLDWMLP--GMTGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R +R      ++P+I ++     Q  +   +SG DD + KP   RE+ AR+ A+ RR
Sbjct: 63  EFARRLRGDERTREIPIIMLTARGEEQDKVAGLESGADDYITKPFSPRELAARITAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + + +  E G +R+               L   E R+L + M +  +  ++ Q+   
Sbjct: 123 RAPQTTEDAVEAGDLRLDPVTHRVGCGDRPVALGPTEFRLLHFFMTHPERVHSRAQLLDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VE+  V+ H+ +LR  L        + + R  GY  
Sbjct: 183 VWGDH-VFVEDRTVDVHVRRLRAALEPSGHDQLIQTVRGSGYRF 225


>gi|326202143|ref|ZP_08192013.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987938|gb|EGD48764.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  F S           + D++ ++  +        
Sbjct: 5   ILVVDDEKEIADLVELYLRNENYNIYKFYSPIEALKSIDEIKYDLAILDVMMPV--MDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L + IR     P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 63  KLCQKIREKYNFPVIMLTAKVEEMDKITGLTLGADDYITKPFSPLEMVARVKAQLRRFTR 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               ++ SN+  E   + +     +  +  +   L   E  IL  L  NRG+ ++  ++F
Sbjct: 123 YNEGIQQSNDILEVSSLIMNKTTHECSLNEQPLILTPTEFSILWILCENRGQVISSERLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             ++G    +   N V  HI  LR+K++   G    + +   +GY I+
Sbjct: 183 QEVWGEKYFSGSNNTVMVHIRHLREKMKEPEGNPKFIKTVWGVGYKIE 230


>gi|227498372|ref|ZP_03928522.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226903834|gb|EEH89752.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 274

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +++             + F   E    +      D+  ++  L   GE  +
Sbjct: 50  IYCVEDDENIRELVAYALESQQFETQTFADGESFYKVLEKKIPDLVLLDIMLP--GESGI 107

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR     + +P+I ++   S    +     G DD V KP    E+++R+ A+ RR
Sbjct: 108 EILKKIRHKERTADLPVIMLTARTSEYDVVKGLTIGADDYVTKPFGILELISRIRAVLRR 167

Query: 119 LKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +E    GP+ +          GE   L  +E  +L YLM N G  + + QI  
Sbjct: 168 SHRVEKPSEMLVCGPVTLDPLKHAVSAYGEEVMLTAKEFELLHYLMMNVGIVLQREQIME 227

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +++G F  A E   ++ HI  LR+KL    G   + + R +GY +D
Sbjct: 228 SVWG-FTYAGESRTIDMHIKSLRQKLGE--GGQIIKTIRGVGYRLD 270


>gi|256005030|ref|ZP_05430001.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418071|ref|ZP_06249091.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255990998|gb|EEU01109.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409473|gb|EFB39731.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939889|gb|ADU73923.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 239

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 103/228 (45%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       ++G  +E F   E    +    + D+  ++  L   G   
Sbjct: 8   LIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIMLP--GVDG 65

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ + I+ +     +P+I ++        +   + G DD ++KP   RE +ARV   +R
Sbjct: 66  FEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFR 125

Query: 118 R----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R     + S  R   G I +  + R+     ++  +  +E  +L+ L+ NRGK +++  +
Sbjct: 126 RQADSFENSPKRVNVGRITIDFERREVYKDNQIIEMTFKEFELLKLLIMNRGKVLSRDML 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              I+G FD   E   V+ HI  LR+K+ +       +++ R +GY  
Sbjct: 186 LQKIWG-FDFFGETRTVDVHIRYLRQKIEDDDNNPVYIETVRGIGYRF 232


>gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 229

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G      N              D+  ++  L   G    E
Sbjct: 5   LIVEDEESLADPLAFLLRKEGFEASIVNDGSEAVSTFERVNPDIVLLDLMLP--GVSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR  V 
Sbjct: 63  ICKTIRAKSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGVV 122

Query: 123 NN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +         E GP+R+        V G    LP +E  +LEYL+ N G+ + ++Q+  
Sbjct: 123 ADDEDAAIGVVEVGPVRMDVQRHTVTVAGTEVTLPLKEFDLLEYLLRNSGRVLTRSQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKVEPDPSQPRHLITVRGLGYKFE 228


>gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni
           ACN14a]
 gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR,
           regulation of Pi uptake (OmpR family) [Frankia alni
           ACN14a]
          Length = 226

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    +   +G  +                  D+  ++  L   G    
Sbjct: 4   LLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLP--GLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRTLRTRSSVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V+    E GP+R+  +     V G +  LP +E  +LE  + N G+ + + Q+   +
Sbjct: 122 TEEVAEATLEAGPVRMDVERHVVTVDGSMVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  + G    + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEREPGNPRHLVTVRGLGYKFE 225


>gi|291535462|emb|CBL08574.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 234

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +  N  + EE L++  +   + I   L+  G    
Sbjct: 7   ILIVDDDNNIAELISLYLTKECFDTKIVN--DGEEALKAFEQYSPNLILLDLMLPGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA + VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREVRAKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        +   + V         +     +P +E  +L +L ++  +   + Q+
Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              I+G ++   +   V+ H+ +LR+K+++   +    +   +GY  + 
Sbjct: 185 LDHIWG-YEYIGDTRTVDVHVKRLREKIKDNDSWSL-STVWGIGYKFEV 231


>gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
 gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
          Length = 232

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G +     +      +    + D+  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLP--GMDGY 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR  + +   P+I I+        +   + G DD + KP   RE++ARV A+ RR
Sbjct: 64  EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMIARVKAVLRR 123

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               N  +++   G I V  +       GE   L  +E  +LE L+ N+GK + +  +  
Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            I+G ++   E   V+ HI  LRKK+ +       +++ R +GY  +
Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229


>gi|77359551|ref|YP_339126.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874462|emb|CAI85683.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 229

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++  + +   +G         +           D+  ++  L   G   ++
Sbjct: 6   LVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLP--GGSGIQ 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +  + +     +P+I ++     +  +   + G DD V KP   +E++AR+ A+ RR+
Sbjct: 64  IAKKFKQNEYTRAIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++     +   +R+          G    +   E R+L + M +  +  ++ Q+   +
Sbjct: 124 SPTSLEEAIDVHGLRLDPISHRVTSGGSELDMGPTEFRLLHFFMTHTERVYSREQLLDQV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VE+  V+ HI +LRK +        V + R  GY  
Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAISPLGHDRLVQTVRGAGYRF 225


>gi|291522156|emb|CBK80449.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 226

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 114/228 (50%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE----DVSAIEAFLIGKG 57
            +++DD + ++         D ++ +GF  +E  +  ++  +     D++ I   ++   
Sbjct: 6   ILVVDDESRMRK-----LVRDFLTKKGFTVIEAGDGEEAVDKFFEVKDIALIILDVMMPK 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               ++ R IR +S+VP+I ++     +  L  FD GVD+ + KP   + ++ARV AI R
Sbjct: 61  MDGWQVCREIRQYSKVPIIMLTAKSDEKDELQGFDLGVDEYITKPFSPKILVARVEAILR 120

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R  V  +++  E G I +     +  + G+   L  +E  +L Y M+N+G  +++ +I +
Sbjct: 121 RSNVLAADDTMEAGGIELNKAAHEVLIDGKSVELSYKEFELLAYFMSNQGVALSRERILN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++  +D   +   +++H+ KLR KL  K   + + +   +GY  + N
Sbjct: 181 NVWN-YDYFGDARTIDTHVKKLRSKLGAKG--EYIKTIWGMGYKFEVN 225


>gi|254506701|ref|ZP_05118841.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus 16]
 gi|323499854|ref|ZP_08104813.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|219550282|gb|EED27267.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus 16]
 gi|323315095|gb|EGA68147.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 229

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           E   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEALDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225


>gi|254252693|ref|ZP_04946011.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124895302|gb|EAY69182.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 235

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 7   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLP--GKSGI 64

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 65  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124

Query: 119 L--KVSNNRAETGPIRVFSDGRDP--EVQGEVF--PLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+         +  G      L   E R+L + M +  +  ++TQ
Sbjct: 125 RAPQLTEDVVSINGLRLDPATHRVAAQSDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
 gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 239

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + + EE L+ +  EDV      ++  G    
Sbjct: 6   ILVVDDDPAILELVGYNLSKEGYEV--LKAYDGEEALKIANDEDVDMFIVDIMLPGIDGF 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IRA   +   P+I +S        +   + G DD + KP   RE+LARV AI+RR
Sbjct: 64  ELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 123

Query: 119 LKVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           L  +    E          + +  +  + +V+G+   L   E  +L +L  N GK  ++ 
Sbjct: 124 LSTATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 232


>gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 228

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G  ++          L SS   DV  ++  L  K     
Sbjct: 10  ILIVEDEETISAFLQKGLREEGFVVDSAKDGNEAIRLSSSNPYDVIILDVLLPIK--NGF 67

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +RA     P++ ++   S+   +   ++G DD + KP   +E+LARV A+ RR +
Sbjct: 68  EVCSELRASGNHTPVLMLTALDSVDERVKGLNTGADDYLVKPFAFKELLARVNALLRRPR 127

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S +       + + +     +   +   L  +E R+LE+L  N  + +++TQI  +++ 
Sbjct: 128 ESFDRVLRVSDLSIDTVSHTVKRGDKEIELSPKEYRLLEHLARNAHQVLSRTQIAESVWD 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NVV+ +I  LRKK+ +      +++ R  GY +
Sbjct: 188 Q-DFFSDSNVVDVYIRYLRKKIDDPFPTKLINTVRGFGYKL 227


>gi|188026544|ref|ZP_02962517.2| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827]
 gi|188019362|gb|EDU57402.1| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827]
          Length = 260

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G      +  +           D+  ++  +   G   +
Sbjct: 36  ILVVEDEAPIREMVCFVLEQNGFQSIEADDYDSAIAQLVDPLPDLVLLDWMIP--GGSGI 93

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + ++  S    +P++ ++     +  +   + G DD + KP   +E++ARV AI RR
Sbjct: 94  QVIKHMKRDSDTRDIPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELVARVKAILRR 153

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    + +  E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 154 ISPMATEDIIEMNGLTLDPTSHRVSSNDTPIDMGPTEYKLLHFFMTHPERVYSREQLLNY 213

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L  +     V + R  GY  
Sbjct: 214 VWGA-NVYVEDRTVDVHIRRLRKALEAEGHDKMVQTVRGTGYRF 256


>gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
          Length = 230

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +      E    + +    D+  ++  L       +E
Sbjct: 6   LVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERGPDLVILDWMLPKV--SGIE 63

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R       VP+I ++        +   D+G DD V KP    E+ ARV A+ RR+
Sbjct: 64  VCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRI 123

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +++R   G I +       +  G+   L   E R+L+YLM + G+  ++ Q+  A+
Sbjct: 124 RPGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  VE   V+ HI +LRK+L      DP+ + R  GYS+D
Sbjct: 184 WG-SDVYVEARTVDVHIGRLRKELNGTTDADPIRTVRSAGYSLD 226


>gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6]
 gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
          Length = 251

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 104/234 (44%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E  ++  + D+  ++  L       
Sbjct: 21  ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILDLMLPE--IDG 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR +
Sbjct: 78  LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 137

Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 138 PMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITR 197

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +  N
Sbjct: 198 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNN 250


>gi|266619369|ref|ZP_06112304.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288869086|gb|EFD01385.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG  +  F +    + L    + ++  +   ++  G   +
Sbjct: 7   ILVVDDEKEIAELVEIYLVSDGYKV--FKANNAMDGLDILDKNEIHLVLLDIMMPGMDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  + +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 65  EMCRKIRETNNIPIIMLSAKSTDLDKIMGLGTGADDYVTKPFNPLELTARVKSQLRRYTQ 124

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   + + N      + +  D     V GE   L   E  IL  L +N G+  +  
Sbjct: 125 LNPNSAVNEKAGNEITIRGLIINKDNHKVTVYGEEIKLTPIEFDILYLLASNPGRVFSTD 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +IF  ++         N V  HI +LR K++        + +   +GY I+
Sbjct: 185 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIE 234


>gi|325982918|ref|YP_004295320.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325532437|gb|ADZ27158.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 240

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++         G         E    +   A  D+  ++  L       +
Sbjct: 5   ILIVEDEAAIRELIAYNLQQAGYESICAEDAEKAMTIIHDALPDLILLDWMLPN--MTGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  R++R + +   +P+I ++        +   + G DD V KP   RE++AR+ A+ RR
Sbjct: 63  DFARLLRRNERTRIIPIIMLTARTQEADKVAGLEIGADDYVTKPFSPRELIARINAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           L  + S    E   +R+           +   L   E R+L ++M++  +  +++Q+   
Sbjct: 123 LIPEASAQVVEIHGLRLDPVNHRVTDGNKEIELGPTEYRLLHFMMSHTERTYSRSQLLDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LRK L+       + + R  GY  
Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALQWSGKDSWIQTVRGAGYRF 225


>gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
 gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
          Length = 226

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 106/225 (47%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +E   + +  E L+ +       +   ++      +
Sbjct: 4   ILLVEDEEKLARVVELELRYEGYEVE--KAFDGREGLEKALSGGFDLVLLDIMLPSMSGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           E+ R +R  SQVP+I ++   ++   +   DSG DD + KP    E+LAR+ A  R+  +
Sbjct: 62  EVLRRLRRESQVPVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALRKRPV 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +     GP+ +  +  +  V+G    L RRE  +L YL+ N+ K +++  +   ++G
Sbjct: 122 RQESAVLTAGPLTMDPERHEVTVKGTPVELTRREFDLLRYLLENKEKVISRESLLDNVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
            FD   E N V+ +I  LR K+    G   + + R +GY I + N
Sbjct: 182 -FDFVGETNAVDVYIRFLRAKIDEAFGIKLIHTVRGVGYVIREEN 225


>gi|291326910|ref|ZP_06126309.2| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rettgeri DSM 1131]
 gi|291312483|gb|EFE52936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rettgeri DSM 1131]
          Length = 244

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +   +G      +  +           D+  ++  + G  G +V
Sbjct: 20  ILVVEDEAPIREMVCFVLEQNGFQPIEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQV 79

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +   A   VP++ ++     +  +   + G DD + KP   +E++ARV AI RR+ 
Sbjct: 80  IKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRIS 139

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +  E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 140 PMATEDIIEMNGLTLDPTSHRVTSNDIPIDMGPTEYKLLHFFMTHPERVYSREQLLNYVW 199

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L  +     V + R  GY  
Sbjct: 200 GA-NVYVEDRTVDVHIRRLRKALETEGHDKMVQTVRGTGYRF 240


>gi|300854624|ref|YP_003779608.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
 gi|300434739|gb|ADK14506.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
          Length = 232

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G ++  F + +       S + +++ ++  L        
Sbjct: 5   ILVVDDEQSIADLIEVYLKNEGFTIYKFYNGQDALRCVESEQLELAILDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 63  TICQKIREKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 122

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N+              + +  +  +  +  +   L   E  IL  L +NRG+ ++  ++
Sbjct: 123 YNSGEPNQEEQLIAFSGLVLDMNTHECTLNEKKLSLTPTEFSILWVLCSNRGRVISSEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           F  ++G        N V  HI  LR+KL +       + +   +GY I+
Sbjct: 183 FHEVWGDKYFTNSNNTVMVHIRHLREKLHDSAEHPKYIKTVWGIGYKIE 231


>gi|148253503|ref|YP_001238088.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405676|gb|ABQ34182.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 235

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLETEGYEVETVGRGDEADTRLKERVPDLVVLDWMLP--GLSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R      Q+P+I ++        +    +G DD + KP    E+LARV  + RR
Sbjct: 63  ELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G I +  + R     G    L   E R+LE+ + + G+  ++ Q+  +
Sbjct: 123 ASPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 225

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  ++          L S+   D+  ++  L   G   L
Sbjct: 4   ILVIEDETEIASFLRRGLSLEGYQVDVAFDGTRGLELASTGTYDLIVLDLMLP--GIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +RA S VP+I ++   +++  +   ++G DD + KP    E+LAR+ A  RR + 
Sbjct: 62  EVARRLRADSNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRRQS 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      + + +  R+  V      L  +E  +LE  M +  + + +  I+  ++ 
Sbjct: 122 GQAQDVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDIIYDRVWN 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E N++E ++  LR+KL        + + R +GY +
Sbjct: 182 -YDFGGESNILEVYVRYLRQKLEANGEPRLIHTVRSVGYIL 221


>gi|254430407|ref|ZP_05044110.1| two-component response regulator, phosphate [Cyanobium sp. PCC
           7001]
 gi|197624860|gb|EDY37419.1| two-component response regulator, phosphate [Cyanobium sp. PCC
           7001]
          Length = 238

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 100/234 (42%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAR---------EDVSAIEA 51
            ++++D   +++        +G S+    N  +    LQ SAR         E  + +  
Sbjct: 5   LLVVEDDETIRETLQEALELEGFSVTACANGRDALNALQRSARPQPGRDDPGEGFALVVL 64

Query: 52  FLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
            L+  G   L++ R +RA S   P++ +S   S    +   + G DD + KP   RE++A
Sbjct: 65  DLMLPGLGGLDVCRALRAASNFTPILVVSARDSETDRVLGLEVGADDYLVKPFGMRELVA 124

Query: 111 RVAAIYRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           R  A+ RR      +    E   I+++ +       G    L  +E R+LE  M +  + 
Sbjct: 125 RCRALLRRSASQGAAEKVLEHANIKLYQEECRVTRDGLPVNLSPKEYRLLELFMQHPRRV 184

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            ++ ++   ++G+ D   +   V+ HI  LR+K+  +      + + R  GY  
Sbjct: 185 WSRDKLLEHVWGV-DYFGDSKTVDVHIRWLREKIEEEPSAPCHLVTVRGFGYRF 237


>gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 227

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E   + +  E +Q +  E    I   ++      +
Sbjct: 6   ILIVEDEIKIARFLELELTHEGYDVE--QAHDGREGVQKAQNEPFDLIILDIMLPHINGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---RR 118
           E+ R IR  S +P+I ++    +   +   D G +D + KP    E+LAR+ A     R+
Sbjct: 64  EVLRKIRQTSTIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAALKAGRQ 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L    N  + G +++ +D        E+  L ++E  +L Y + N+   + + +I  A++
Sbjct: 124 LVSKENTLQLGNLKLDTDMYKVTYGTEIIELTKKEFDLLHYFLENKNIVLTRDKILQAVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   + N+V+ +I  LR K+ +K     + + R +GY +
Sbjct: 184 G-YDYIGDTNIVDVYIRYLRSKIDDKYNIKLIHTVRGVGYIL 224


>gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 238

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L       L
Sbjct: 5   ILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVEEDVPDLVILDLMLP--KIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREIRKKHDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQNT 122

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +  N   E G + +  +      +G    L  RE  +L YL  + G+ + +  
Sbjct: 123 AAHAQPEEPENQDIEIGDLTIHPEAYSVSKRGANIELTHREFELLHYLAQHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPTWLVTRRGVGYYL 230


>gi|24111777|ref|NP_706287.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 301]
 gi|30061895|ref|NP_836066.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 2457T]
 gi|110804422|ref|YP_687942.1| transcriptional regulator PhoB [Shigella flexneri 5 str. 8401]
 gi|27735236|sp|P45607|PHOB_SHIFL RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|24050564|gb|AAN41994.1| positive response regulator for pho regulon [Shigella flexneri 2a
           str. 301]
 gi|30040139|gb|AAP15872.1| positive response regulator for pho regulon [Shigella flexneri 2a
           str. 2457T]
 gi|110613970|gb|ABF02637.1| positive response regulator for pho regulon [Shigella flexneri 5
           str. 8401]
 gi|281599731|gb|ADA72715.1| Phosphate regulon transcriptional regulatory protein phoB [Shigella
           flexneri 2002017]
 gi|313646986|gb|EFS11443.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2a str. 2457T]
 gi|332761723|gb|EGJ92002.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2747-71]
 gi|332764273|gb|EGJ94509.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-671]
 gi|332768503|gb|EGJ98686.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2930-71]
 gi|333022012|gb|EGK41257.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-304]
          Length = 229

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         +   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIKMQGLSLNPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|260771433|ref|ZP_05880358.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           furnissii CIP 102972]
 gi|260613559|gb|EEX38753.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           furnissii CIP 102972]
          Length = 229

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++               +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDAPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEEAGHDKLIQTVRGAGYRF 225


>gi|227873346|ref|ZP_03991607.1| response regulator [Oribacterium sinus F0268]
 gi|227840824|gb|EEJ51193.1| response regulator [Oribacterium sinus F0268]
          Length = 244

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 99/239 (41%), Gaps = 24/239 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + +        +    +     + EE L+S  +E V+ I   L+  G    
Sbjct: 7   ILIVDDDSSIAELVSLYLEKECY--DTRICEDGEEALKSLEKEPVALIILDLMLPGIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  S VP+I +S        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  EVCRRIRTSSNVPIIMLSAKGETFDKVLGLELGADDYMLKPFDTKELVARVKAVLRRSQH 124

Query: 121 -------------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
                                        + +         +G+   +P +E  +L +L 
Sbjct: 125 VFSPPLEEDKEKEGGEDLLRKGKYIAYEDLVINLSNYAVHYKGKAIDMPPKELELLYFLA 184

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +   + Q+   I+G ++ A +   V+ HI +LR+KL     ++ + +   +GY  
Sbjct: 185 SSPNQVFTREQLLDHIWG-YEFAGDSRTVDVHIKRLREKLPQVEEWE-ISTVWGIGYKF 241


>gi|197250808|ref|YP_002145379.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197214511|gb|ACH51908.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 229

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 100/229 (43%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G     F  +E E++  +  +      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNG-----FQPVEAEDYDSAVNKLNEPWPDLILLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L+  + ++  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ 
Sbjct: 58  GGSGLQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +          G    +   E ++L + M +  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPGSHRVMTGGSPLDMGPTEFKLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 178 QLLNHVWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 231

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +  +   + +E L+         I   ++  G   +
Sbjct: 6   ILIIEDEKQIARFIELELKHEGYDV--YVCYDGKEGLKKVEEIHPDLILLDIMLPGINGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR HS VP+I ++    +   +   DSG DD V KP    E+LAR+ A  R+ K 
Sbjct: 64  EICRKIRQHSNVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N          + + +  R  +   ++  L +RE  +LEYL+ N+G  + + QI   ++
Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +    + NVV+ +I  LR K+ +      + + R +GY  +
Sbjct: 184 G-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCE 225


>gi|333010839|gb|EGK30265.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-272]
 gi|333021338|gb|EGK40591.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-227]
          Length = 229

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 IWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|332760677|gb|EGJ90965.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 4343-70]
          Length = 229

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         +   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIKMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|312141110|ref|YP_004008446.1| two component system response regulator [Rhodococcus equi 103S]
 gi|311890449|emb|CBH49767.1| two component system response regulator [Rhodococcus equi 103S]
          Length = 226

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  +  D+  ++  L   G    +
Sbjct: 2   LIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVMLP--GMSGTD 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCKQLRAKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 119

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V +     GP+R+  +     V G+   LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 120 EAATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+    G    + + R LGY ++
Sbjct: 180 RVWGA-DYVGDTKTLDVHVKRLRAKIEGDPGKPKHLVTVRGLGYKLE 225


>gi|309789803|ref|ZP_07684382.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308228107|gb|EFO81756.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 232

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   +    +G +++          L  + R D+  ++  L   G   +
Sbjct: 6   ILVVDDEQPIVDLVASYLAAEGFAVQRAYDGPSALTLARACRPDLVILDVMLP--GLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +   + V ++ ++        L     G DD + KP   RE++ARV AI RR + 
Sbjct: 64  EVCRRLHQETAVYVLMLTARTDEVDKLIGLSVGADDYLTKPFSPRELVARVKAILRRTRA 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +           + +  + R+ +       L  RE  +L  L +  G+   + ++  
Sbjct: 124 PAGKTNERPSLIFDSLSIDPERREVKRGELQIELTPREFDLLYALASYPGRVFTREELLQ 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D A  + VV+ H+  LR+KL +      V + R +GY  
Sbjct: 184 RVWGA-DFAGIDRVVDVHVGTLRRKLEDDGDASYVQTVRGVGYKF 227


>gi|139438314|ref|ZP_01771867.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC
           25986]
 gi|133776511|gb|EBA40331.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC
           25986]
          Length = 250

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +      G+  EGF+     +   +    D   ++  L       
Sbjct: 9   MIYYVEDDDNIRDLTVYALRKQGIEAEGFSCDGEFKAAVARRVPDAVLLDIMLPDT--DG 66

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L + R +RA    + VP++ ++   +    +   D G DD + KP    E+ +R  A+ R
Sbjct: 67  LAIMRRLRADRLTATVPIMMLTAKDTELDKVMALDGGADDYLTKPFSLMELASRCRALLR 126

Query: 118 R---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R   +K +++    G I +    R+  V GE   L  RE  +LEYLM   G    +  + 
Sbjct: 127 RGGMVKQASDVLSVGDIVLSPSHREVTVAGESLKLTLREFDLLEYLMRKPGVVFTRESLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++G +D       V+ H+  LR+KL        +++ R +GY +
Sbjct: 187 QSVWG-WDFDGGSRTVDVHVQTLRQKLGEHASA--IETVRGVGYRL 229


>gi|49081852|gb|AAT50326.1| PA5360 [synthetic construct]
          Length = 230

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +     G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLGVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++    E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 TGPGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGEVYE-NLVQTVRGTGYRF 225


>gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 230

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 102/227 (44%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +    + +  E   ++ +E +  I   L+  G   ++
Sbjct: 6   LVVDDEPSIVTLLKFNLEQAGFEV--LTASDGNEGYDTARKEKLDVIILDLMLPGMDGMD 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR   
Sbjct: 64  VCKQLRLGKINTPILMLTAKSDELDKILGLELGADDYITKPFSPREVVARVKAILRRAET 123

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +    + G +R+  +  +   + +   L  +E  +L YL  + GK +++ Q+ +A
Sbjct: 124 KTEEETAEAIKVGDLRILPEQFEAYFKEKKLELTPKEFELLLYLANHAGKVLSRDQLLNA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
           ++  FD A +  +V+ HIS LR+K+         + + R  GY ++ 
Sbjct: 184 VWN-FDFAGDTRIVDVHISHLREKMEEDTKQPQYIKTVRGFGYKMEV 229


>gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
 gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
          Length = 223

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G +     + + E  L    R+ +  I   ++       
Sbjct: 4   ILIVDDEKEMRELLRLYLEPEGFTC--IEADDGEAGLAEFGRKQIDLILLDIMMPKLDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R  SQVP+I ++        +     G DD + KP    E++ARV A+ RR K 
Sbjct: 62  RFCMHVRERSQVPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVLRRTKG 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++     E GPI +    R  +V G+   L  +E  +L   + +RG+   + Q+   ++G
Sbjct: 122 TDVTTSYEAGPIVIDEKARKVKVNGKPVVLTLKEFELLTLFVKHRGQVFTREQLLDRVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +         V++HI  LR KL        + +   +GY  D
Sbjct: 182 IH-YVGSTRTVDTHIKTLRIKLGEAG--QYIQTVWGVGYKFD 220


>gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676]
 gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676]
          Length = 231

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  +V  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQKVSTYEVDLMILDIMMPKLNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  ++           + +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIE 230


>gi|91975373|ref|YP_568032.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91681829|gb|ABE38131.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 233

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA S     P+I ++        +    +G DD + KP    E+LARV  + RR
Sbjct: 63  ELCRRLRARSDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +  D R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|153813306|ref|ZP_01965974.1| hypothetical protein RUMOBE_03723 [Ruminococcus obeum ATCC 29174]
 gi|149830596|gb|EDM85687.1| hypothetical protein RUMOBE_03723 [Ruminococcus obeum ATCC 29174]
          Length = 222

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIG-KGE 58
           M   ++D   +++  I      G S  G  NS E ++ L+     D+  ++  L G  G 
Sbjct: 1   MIYCVEDEKNIRELLIYTLETTGFSARGMANSKELKDALK-EELPDLILLDIMLPGEDGY 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +LE  +       +P+I ++   +    +   ++G DD + KP    E +ARV A+ RR
Sbjct: 60  SILERLKASSETQNIPVIMVTAKEAEYDKVRGLEAGADDYITKPFGMMEFVARVKAVLRR 119

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +   +   +R+         + E   L R+E  +L+YLM N+G  + + QI   
Sbjct: 120 CSRQEEDKELKCDDLRLSVGRHKVYWKEEKVELTRKEFELLQYLMENKGLVMTRNQILCH 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D   E   V+ H+  LR+KL      + +++ R +GY I
Sbjct: 180 VWG-YDFDGETRTVDVHVRTLRQKLGEAG--NLIETVRGVGYRI 220


>gi|152974657|ref|YP_001374174.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023409|gb|ABS21179.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 235

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD + +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDESAILQLLTTILQKEGFSHITTATSAEEALLLVEDHSYDLMILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHL 123

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +++    G  +V     + +V G +     +  ++L +   +     +K +I
Sbjct: 124 KYTPKTIQTSDIYSFGRFQVDKHAAELKVDGNIVECSAQLFQLLLFFCEHPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  N      + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEFNPSNPQYIKTVRGLGYKF 231


>gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
 gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
          Length = 239

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLP--KMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +                   +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVAEAPDEDSILIADLKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 DQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLE 233


>gi|255324243|ref|ZP_05365365.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255298759|gb|EET78054.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 235

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G   E   + +    L+  A  D+  +   L+  G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGF--EPIIAHDGPTALEKFAANDIDIVLLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCKQLRTTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHD 121

Query: 119 ----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                      +V+    E G +++  +     V  E   +P +E  +LEYL+ N G+ +
Sbjct: 122 SGAGADTEAEEEVAEQILEGGRVKMDVERHTVTVADEPVSMPLKEFDLLEYLLRNAGRVL 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            + Q+   I+G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 TRGQLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEQPSRPKHLVTVRGLGYKFE 234


>gi|221066120|ref|ZP_03542225.1| two component transcriptional regulator PhoB, winged helix family
           [Comamonas testosteroni KF-1]
 gi|264679333|ref|YP_003279240.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299532292|ref|ZP_07045685.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|220711143|gb|EED66511.1| two component transcriptional regulator PhoB, winged helix family
           [Comamonas testosteroni KF-1]
 gi|262209846|gb|ACY33944.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298719700|gb|EFI60664.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 231

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   + +        +G            +    +   DV  ++  L   G   
Sbjct: 6   MVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVSAQRELDAVLPDVILLDWMLP--GASG 63

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L L R  RA S+   VP++ ++        +   D+G DD + KP   +E+LAR+ A+ R
Sbjct: 64  LSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLR 123

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R       ++   G + + +       QG++  +   E ++L YLM +  +  ++ Q+  
Sbjct: 124 RRAPEQVQDKVSIGELVLDAAAHRVSWQGDLLKIGPTEFKLLNYLMKHPERVHSRAQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G     +EE  V+ H+ +LR+ L   +    +++ R  GY  
Sbjct: 184 KVWGDH-VFIEERTVDVHVKRLRESLG--VAGVLIETVRGAGYRF 225


>gi|146277961|ref|YP_001168120.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556202|gb|ABP70815.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 230

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D    ++        +G  +    + +    L      DV  ++  L       
Sbjct: 8   VVLLVEDEPAQREVLSYNLESEGFRVVQAGTGDEALMLVEETGPDVIVLDWMLPSV--SG 65

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +++      VP+I +S        +   ++G DD V KP    E++ARV +  R
Sbjct: 66  IEVCRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLR 125

Query: 118 RLKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R + S+     E   IR+  +       G++  L   E R+L   M   G+  ++ Q+  
Sbjct: 126 RARPSSVGLTLEFEDIRLDPETHKVHRAGQILKLGPTEFRLLSTFMEKPGRVWSREQLLD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 186 RVWGR-DIYVDSRTVDVHVGRLRKALCVHGGEDPVRTVRGAGYAL 229


>gi|330816276|ref|YP_004359981.1| Response regulator [Burkholderia gladioli BSR3]
 gi|327368669|gb|AEA60025.1| Response regulator [Burkholderia gladioli BSR3]
          Length = 233

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLP--GKSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 63  AFARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDP----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+           E       L   E R+L + M +  +  ++TQ
Sbjct: 123 RAPQLTEDVVSINGLRLDPATHRVAAAAEGNEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|256380732|ref|YP_003104392.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255925035|gb|ACU40546.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G +     +    E L+   R     +   L+  G    +
Sbjct: 5   LIVEDEESFADPLAFLLRKEGFT--AALAATGPEALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   S
Sbjct: 63  VCKQLRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGES 122

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E GP+R+  +     V GE   LP +E  +LEYL+ N G+ + + Q+   ++
Sbjct: 123 EELLPQVLEAGPVRMDVERHVVTVNGEEVALPLKEFDLLEYLLRNVGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRSKVEPDPATPRHLVTVRGLGYKFE 225


>gi|114566483|ref|YP_753637.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337418|gb|ABI68266.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 239

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +      +    +   A  D+  ++  L       L
Sbjct: 6   ILVVDDETHIVELVKFNLEKEGYRVAVAYDGQCALEMVKDAPPDLILLDIMLPQ--MDGL 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++ HS+   +P+I ++       T+   + G DD + KP   RE++ARV A  R 
Sbjct: 64  EVCRTLKQHSEYKTIPIIMLTAKGEEIDTILGLEMGADDYIKKPFSPREMVARVKARLRA 123

Query: 119 LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           L++       G        + V  +  +  +  E   L  +E  +L  + +N+GK   + 
Sbjct: 124 LRILKAEKAMGQKAYVFKELTVVPEKYEAFIGEEKLELTPKEFELLRLMASNQGKVFTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G ++ + +   V+ HI  LR+KL  +    D +++ R +GY  
Sbjct: 184 VLLEKVWG-YEFSGDTRTVDVHIRHLRQKLGDDSTYPDYIETVRGVGYRF 232


>gi|78044728|ref|YP_360866.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996843|gb|ABB15742.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 231

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD A + +        +G  + E ++ +   E +      D+  ++  L   G   
Sbjct: 3   ILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALE-IVKKELPDLVILDIMLP--GMSG 59

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ + IR     +++P+I +S        +   + G DD + KP   RE++ARV A  R
Sbjct: 60  LEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPRELVARVKARLR 119

Query: 118 RLKVSNNRAETGPIRVFSDGRD----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RL+    + E                  V+G+      +E  +L+ L +N GK   +  +
Sbjct: 120 RLEGREGKKEGIIKIKDIVIDQEKFAVYVKGKKMDFTPKEFELLKLLASNPGKVFTREYL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              I+G ++   +   V+ HI  +R+K+ +       +++ R +GY  
Sbjct: 180 LEKIWG-YEFLGDTRTVDVHIRHIRQKIEDNPADPVYIETVRGVGYRF 226


>gi|77461827|ref|YP_351334.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385830|gb|ABA77343.1| phosphate regulon two-component system, response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 229

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++     E G + +        + G    +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGRPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 233

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       N  E       +   ++  ++  L   G    
Sbjct: 7   ILIVDDDNNIAELISLYLIKECFETRICNDGESAINTFDTFEPNLVLLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR K 
Sbjct: 65  QVCREIRTKSQVPIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLRRYKP 124

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +           + +       +  GE   +P +E  +L +L A+      + Q+
Sbjct: 125 QVQEIQESDDKVVRYPDLEINMTNYSVKYMGERVDMPPKELELLYFLAASPNHVFTREQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              I+G ++   +   V+ HI +LR+KL +   +    +   +GY  + 
Sbjct: 185 LDQIWG-YEYIGDTRTVDVHIKRLREKLSDHEKWRLA-TIWGIGYKFEV 231


>gi|166032814|ref|ZP_02235643.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
           27755]
 gi|166027171|gb|EDR45928.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
           27755]
          Length = 235

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 112/228 (49%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD + ++         D +  EG+  LE  + L++     A +D++ I   ++   
Sbjct: 16  ILVVDDESRMRK-----LVKDFLEREGYQVLEAGDGLEAMEAFYAEKDIALIILDVMMPK 70

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               +  R IR  S+VP+I ++     +  L  FD GVD+ ++KP   + ++ARV A+ R
Sbjct: 71  MDGWQTCREIRQSSKVPIIMLTARGDERDELQGFDLGVDEYISKPFSPKILVARVNALLR 130

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R  V  ++   E G I V       +V G+   L  +E  +L Y + N+G  +++ +I +
Sbjct: 131 RSNVLDADEHVEAGGIVVDKAAHQVQVDGKDVELSYKEFELLSYFLENQGIALSREKILN 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++  +D   +   +++H+ KLR KL  K   + + +   +GY  + N
Sbjct: 191 NVWN-YDYFGDARTIDTHVKKLRSKLGEKG--EYIKTIWGMGYKFEVN 235


>gi|114152683|gb|ABI52588.1| two-component response regulator [Bacillus cytotoxicus]
          Length = 235

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD + +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDESAILQLLTTILQKEGFSHITTATSAEEALLLVEDHSYDLMILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKTSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHL 123

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +++    G  ++     + +V G +     +  ++L +   +     +K +I
Sbjct: 124 KYTPKTIQTSDIYSFGRFQIDKHAAELKVDGNIVECSAQLFQLLLFFCEHPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  N      + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEFNPSNPQYIKTVRGLGYKF 231


>gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
 gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
          Length = 229

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D    ++        +G  +    + E    L + A  D+  ++  +       +
Sbjct: 8   ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPL--LSGI 65

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++       +P+I +S       T+   ++G DD V KP   RE++ARV    RR
Sbjct: 66  EVCRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRR 125

Query: 119 LKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++ +++        I + ++            L   E R+L  L+   G+  ++ Q+   
Sbjct: 126 VRPASSGASLSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDH 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V+   V+ HI++LRK L +  G DP+ + R  GY++
Sbjct: 186 VWGR-DIYVDTRTVDVHIARLRKALTSHGGDDPIRTVRGAGYAL 228


>gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 224

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G ++E          +      D+  ++  L   G   L
Sbjct: 4   ILIVEDEAEIAGYLRRGLTFEGYNVEIAADGRQALEIARERPPDLVVLDLMLP--GIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA S VP+I ++   ++   +   ++G DD + KP    E+LAR+    RR + 
Sbjct: 62  EVARRLRAASDVPIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQR 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       GP+ +     +  +      L  +E  +LE  M +  + + +  I+  ++G
Sbjct: 122 EDTATVLRYGPLTMDLTAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVMTRDVIYDRVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   E N++E ++  LR+KL  +     + + R +GY +
Sbjct: 182 -YNFGGESNIIEVYVRYLRQKLEARGEPRLIHTVRGVGYIL 221


>gi|302554749|ref|ZP_07307091.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472367|gb|EFL35460.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 249

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +         G  ++  +         ++   D+  ++  L   G   L
Sbjct: 17  ILVVDDDPTVAEVVAGYLDRAGYLVDRADDGPTALTRAAAHWPDLVVLDLMLP--GMDGL 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R H  VP+I ++        +   + G DD V KP   RE++ RV ++ RR + 
Sbjct: 75  EVCRRMRGHGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRP 134

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +R     + V    R     G    L  RE  +L + + + G+   +  +   ++G
Sbjct: 135 AAPGHRLGAAGLAVDPAARRATKNGSELALTLREFDLLSFFLRHPGRAFGREDLMREVWG 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
              +  + + V  H+ +LR K+ +       + +   +GY  D
Sbjct: 195 W--DFGDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFD 235


>gi|228899978|ref|ZP_04064216.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228859664|gb|EEN04086.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 218

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + ++        + G   E   +   +E L+    +    +   ++      L 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGY--EWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR   +
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAVLRRYTKQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + GPI +    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G 
Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 218


>gi|323485119|ref|ZP_08090471.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
           WAL-14163]
 gi|323694012|ref|ZP_08108196.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323401549|gb|EGA93895.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
           WAL-14163]
 gi|323501948|gb|EGB17826.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 237

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 94/233 (40%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +          E    L      ++  ++  L   G    
Sbjct: 7   ILIVDDDYNIAELISLYLTKECFETRIVGDGEEALKLFPVFEPNLVLLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +RA SQVP+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCRELRASSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                         +  E   + V          G    +P +E  +L +L ++  +   
Sbjct: 125 APPSAAPKPTDQHGDFVEYPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + Q+   I+G ++   +   V+ HI +LR+K+++   +    +   +GY  + 
Sbjct: 185 REQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHDKWAL-TTVWGIGYKFEV 235


>gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 233

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       D+               L    +  +  ++  +   G   +
Sbjct: 6   ILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIMMP--GLDGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP+I +S   +    +     G DD + KP    E++ARV A  RR K+
Sbjct: 64  EVCRRIRAESNVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLRRFKM 123

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S              + +   G +  + G    L  +E  +L +L  +  + + + QIF+
Sbjct: 124 SAVPEPKTRLLSYSGLEIDVQGYEAALAGRPLELTTKEFELLRFLALHPNQVLTREQIFA 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            ++G F+E+ + N V  HI KLR+K+ + L     + +   +GY  
Sbjct: 184 NVWG-FNESGDLNTVTVHIKKLREKIESDLANPTFIKTVWGVGYKF 228


>gi|325524664|gb|EGD02663.1| phosphate regulon two-component regulatory system response
           regulator protein [Burkholderia sp. TJI49]
          Length = 233

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 5   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLP--GKSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDP--EVQGEVF--PLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+            G      L   E R+L + M +  +  ++TQ
Sbjct: 123 RAPQLTEDVVSINGLRLDPATHRVAAHTDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|315122283|ref|YP_004062772.1| putative transcription regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495685|gb|ADR52284.1| putative transcription regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 223

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 198/223 (88%), Positives = 209/223 (93%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M VLIDDRALVK+GYI+LF DDGVSLEGF+SLEFEEW QS A+EDVSAIEAFLIG GEKV
Sbjct: 1   MLVLIDDRALVKNGYISLFSDDGVSLEGFHSLEFEEWFQSLAQEDVSAIEAFLIGTGEKV 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +ELPRIIR+ SQ+PLI ISDY SLQ TLDFFD GVDDVV+KPIHHREILARVAAI+RRLK
Sbjct: 61  MELPRIIRSQSQMPLIAISDYSSLQKTLDFFDVGVDDVVHKPIHHREILARVAAIHRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+N+R E GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL
Sbjct: 121 VANHRVEIGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDE VEENVVESHISKLRKKLR KLGFDPVDSKRFLGYSIDWN
Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGFDPVDSKRFLGYSIDWN 223


>gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 228

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +    +   +G  +    +    E L+   R+    +   L+  G    
Sbjct: 5   LLVIEDEESFSETLAYMLRREGFVVH--TAGSGTEGLELFERQGADLVLLDLMLPGLSGT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 63  DVCRRLRERSNVPIIMLTARDSEVDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRDG 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      E GP+R+  D     V+G    LP RE  +LE L+ + G+ + + Q+   
Sbjct: 123 GGDEQRTTVLEAGPVRIDIDRHVVLVRGAPVHLPLREFELLEMLVRHAGRVLTRQQLIDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           I+G  D   +   ++ H+ +LR ++ +       + + R +GY  +
Sbjct: 183 IWGG-DYVGDTKTLDVHVKRLRSRIEDDPSEPRHLVTVRGVGYKFE 227


>gi|103486311|ref|YP_615872.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976388|gb|ABF52539.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 232

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +  +  F  +G S+      E    L      D+  ++  +  +    +
Sbjct: 6   LLLIEDDEAIAELIVWHFAREGFSVRQTPDGEQALVLVEERVPDIVLLDWMI--ESLPGI 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R +     VP+I ++     +  +   ++G DD V KP   RE++ARV+A+ RR
Sbjct: 64  EVCRRLRRNPKSANVPIIMLTARGEEEDRIRGLETGADDYVTKPFSPRELVARVSAVLRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           L+   +        I + S        G+V  +   E R+L + M + G+  ++ Q+  +
Sbjct: 124 LRPALAGEMLSYADIELDSVAHKVVRGGQVVTMGPTEFRLLRHFMEHPGRVFSRGQLLDS 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  +E   V+ HI +LRK +      D + + R  GY++D
Sbjct: 184 VWGQ-DSDIELRTVDVHIRRLRKAINLPGTSDIIRTVRSAGYALD 227


>gi|254501265|ref|ZP_05113416.1| phosphate regulon transcriptional regulatory protein PhoB
           [Labrenzia alexandrii DFL-11]
 gi|222437336|gb|EEE44015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Labrenzia alexandrii DFL-11]
          Length = 236

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G ++E     +  E      + D+  ++  L   G   +E
Sbjct: 10  LIVEDEEPLSLLLRYNLEAEGYAVETCVRGDEAEIRLRETQPDLLLLDWMLP--GLSGIE 67

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R +RA       P+I ++        +    +G DD V KP    E++ARV AI RR 
Sbjct: 68  LCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 127

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +    +G I +  +        +   L   E R+LE+LM   G+  ++ Q+   +
Sbjct: 128 SPEVVSTMLRSGDIELDRETHRVRRSTKEIHLGPTEFRLLEFLMTAPGRVFSREQLLDGV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  V+E  V+ H+ +LRK L      DP+ + R  GY+ +
Sbjct: 188 WG-HDVYVDERTVDVHVGRLRKALNKGKAKDPIRTVRGAGYAFN 230


>gi|221310230|ref|ZP_03592077.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314553|ref|ZP_03596358.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221319475|ref|ZP_03600769.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323751|ref|ZP_03605045.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767498|ref|NP_390193.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|251757323|sp|P35163|RESD_BACSU RecName: Full=Transcriptional regulatory protein resD
 gi|225185126|emb|CAB14244.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 240

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 93/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +  +++   + +        A  D+  ++  +   G   +
Sbjct: 9   ILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMP--GTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 67  EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++         N      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237


>gi|260892897|ref|YP_003238994.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865038|gb|ACX52144.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 231

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 5/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + +++DD   ++         +G  +           +    R DV  ++  L    G  
Sbjct: 3   LVLVVDDEEHIQKLLHFTLSKEGFQVLVAADGPQALEMARQHRPDVIILDLMLPALDGFT 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           V EL R   +  ++P+I +S   + +  +   D G DD V KP   RE+ ARV A  RR 
Sbjct: 63  VCELLRRDPSLKEIPVIVLSARGTEEDKVRGLDIGADDYVTKPFSPRELAARVKAQLRRR 122

Query: 120 KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    R     GP+ +  +      +     L  +E  +L +L  + G+  ++ Q+   I
Sbjct: 123 QSQAEREKLVYGPLVIDRERYAVAWKEHWQYLAPKEFELLYFLATHPGRVFSREQLLDQI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +G +D       V+ H+  +R+KL         +++ R +GY  
Sbjct: 183 WG-YDYLGGPRTVDVHVRYIRQKLEQMPGAPQLIETVRGVGYRF 225


>gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 232

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G S       E    L      D+  ++  L        
Sbjct: 5   ILIIDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKLAQEKNPDLILLDVMLP--KMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + RI+R     P++ ++        +   + G DD V KP   RE++ARV A  RR  +
Sbjct: 63  TVLRILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 122

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +N     N      + +       E  G    L  RE  +L++L+ANRG   ++  +   
Sbjct: 123 NNGEGMSNVIIVNNLSIDLSKYKVEKNGRPIELTSREFDLLKFLVANRGLIFSREMLLEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 183 VWG-YEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYF 226


>gi|157369284|ref|YP_001477273.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157321048|gb|ABV40145.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 229

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 97/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G        LE E++  +  R      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGY-----QPLEAEDYDSAVTRLSEPFPDLVLLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 58  GGSGIQFIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +           +   +   E ++L + M +  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 178 QLLNHVWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225


>gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 225

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +          +G  ++  F+ L+  E + S+   D+  ++  L       
Sbjct: 4   ILIIEDETEIASYLRRGLSLEGYHVDVAFDGLQGLE-MASTGNYDLVVLDLMLPV--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IRA S VP+I ++   +++  +   ++G DD + KP    E+LAR+ A  RR +
Sbjct: 61  FEVARRIRAASNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRQQ 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + + +  R+  V      L  +E  +LE  M +  + + +  I+  ++
Sbjct: 121 TYQHQEVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDVIYDRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   E N++E ++  LR+KL        + + R +GY +
Sbjct: 181 N-YDFGGESNIIEVYVRYLRQKLEANGEPRLIHTVRSVGYIL 221


>gi|283834288|ref|ZP_06354029.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citrobacter youngae ATCC 29220]
 gi|291069814|gb|EFE07923.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citrobacter youngae ATCC 29220]
          Length = 229

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPIMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGEDPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|42780293|ref|NP_977540.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42736212|gb|AAS40148.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 234

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNDYDLIILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKASDLDKISGFAHGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   + +  G   +  D  +  V G V     +  ++L +   N     +K +I
Sbjct: 124 KQVMTHEQKAHSSSFGRFAIDRDSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G      ++N V  HI KLR+K+  +    + + + R LGY  
Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|330976281|gb|EGH76342.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 229

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G       + +    +    + D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHPIIVDRKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++       +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++     E G + +        + G+   +   E R+L++ M ++ +   + Q+   
Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +    + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225


>gi|113868407|ref|YP_726896.1| response regulator [Ralstonia eutropha H16]
 gi|113527183|emb|CAJ93528.1| response regulator, phosphate regulon transcriptional regulator
           PhoB, OmpR-family [Ralstonia eutropha H16]
          Length = 235

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E    L S    D+  ++  L   G+   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLP--GKSGA 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              + +RA+    Q+P+I ++     Q  +   ++G DD V KP   +E+LAR+ A+ RR
Sbjct: 63  NFAKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++++      +R+         Q +       L   E R+L +LM +  +  +++Q
Sbjct: 123 RAPQLTDDVVAINGLRLDPATHRVTGQDDSGAIKLELGPTEFRLLHFLMTHPERVHSRSQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229


>gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++D       ++G  +    + +      ++  +D+S I   ++        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYEVLVAENGKAGLEYFNNNNKDISIILLDIMLPDISGWS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S+VP++ I+        L  F+ G DD V KP   +E++ARV AI  R   +
Sbjct: 65  LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGA 124

Query: 123 NNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++G
Sbjct: 125 SEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 185 -YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 223


>gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
 gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
          Length = 229

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D    ++        +G  +    + E    L + A  D+  ++  +       +
Sbjct: 8   ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPL--LSGI 65

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++       +P+I +S       T+   ++G DD V KP   RE++ARV    RR
Sbjct: 66  EVCRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRR 125

Query: 119 LKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++ +++        I + ++            L   E R+L  L+   G+  ++ Q+   
Sbjct: 126 VRPASSGAALSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDH 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V+   V+ HI++LRK L +  G DP+ + R  GY++
Sbjct: 186 VWGR-DIYVDTRTVDVHIARLRKALTSHGGDDPIRTVRGAGYAL 228


>gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545]
          Length = 234

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 105/234 (44%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FNS E  E  ++  + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNSREALEQFEA-EQPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR +
Sbjct: 61  LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120

Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 121 PMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|289208144|ref|YP_003460210.1| PhoB family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288943775|gb|ADC71474.1| two component transcriptional regulator PhoB, winged helix family
           [Thioalkalivibrio sp. K90mix]
          Length = 229

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++         G ++     +   + L      D+  ++  L       L
Sbjct: 5   ILLVEDDTAIREMLQLPLHKAGYAVREAGDVRAAKGLLLEDPPDLILLDWMLPDT--SGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  R ++A      +P+I ++     +  +   D G DD V KP   RE++AR+ A+ RR
Sbjct: 63  DWARTLKASPITKDIPIIMLTARGEEEDRVRGLDVGTDDYVTKPFSPRELVARIKAVLRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S    E   +R+          GE   +   E  +L + M ++ +   + Q+   
Sbjct: 123 TAPITSEEPVEVEGLRLDPVSHRVSGHGEALSMGPTEYNLLHFFMTHQDRVFTRGQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEERTVDVHIRRLRKALALTGHDHLVQTVRGSGYRF 225


>gi|225181123|ref|ZP_03734569.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168092|gb|EEG76897.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 229

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 9/211 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +  G       +G  +    + + EE L+    E    I   L+       E
Sbjct: 5   LVVDDEKTIVKGLKFNLEKEGYEV--LVAFDGEEALRVFNEESPDLIVLDLMLPKLDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        +   + G DD V KP + RE+ ARV AI RR + S
Sbjct: 63  VCRNIRKTSDVPIVMLTARGEDIDKILGLELGADDYVTKPFNPRELAARVKAIMRRSQSS 122

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             +++        V+ +   L  +E  +L  + ++ G+  ++ ++   
Sbjct: 123 SGDSGNLQVIRLQDLQIDLFQHKVRVRDKEVDLTSKEFALLSLMASHPGRVFSREKLLEH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF 207
           ++G +D   +   V+ HI  LR+K+    G 
Sbjct: 183 VWG-YDYYGDARTVDVHIRHLREKIEPDPGH 212


>gi|229916170|ref|YP_002884816.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467599|gb|ACQ69371.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 238

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 92/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +E   + E    L      DV  ++  +       +
Sbjct: 7   ILVVDDEERIRRLLKMYLEREQYVIEEAVNGEEALALALENEYDVILLDLMMP--KMDGV 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+   +R     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCTELRKTKATPVIMLTAKGEEIDRVQGFEVGADDYIVKPFSPREVVLRVKALLRRSGS 124

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + S +      + + +D     V GE   L  +E  +L +L     K  ++ Q
Sbjct: 125 TKFMHTSEKSKDLIVFPHLTIDNDAHRVTVDGEEIALTPKEYELLFFLAKQVDKVFSREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  +
Sbjct: 185 LLKEVWN-YEFFGDLRTVDTHVKRLREKLNRVSPDAAHMITTVWGVGYKFE 234


>gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 233

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E         + D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALAQVEEEKPDLILLDLMLP--KIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +RA   +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVARQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   N  + GP+ + SD       G    L  RE  +L YL  + G+ + +  + 
Sbjct: 122 LQQDDETVKNNIKIGPLVINSDSYSVTRDGMQLDLTHREFELLHYLAQHTGQVMTREHLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+    G   +  ++R +GY +
Sbjct: 182 QTVWG-YDYFGDVRTVDVTVRRLREKIEETPGNPQILVTRRGVGYYL 227


>gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016]
 gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 240

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G      +       +    R  +  ++  L   G    
Sbjct: 15  ILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLP--GMDGY 72

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + IR     +  P++ I+        +   + G DD + KP   RE+LARV AI RR
Sbjct: 73  DVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRR 132

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K  +     G I +  D  +    GE   L  +E  +L+ L+ N+G+ + +  +   
Sbjct: 133 TAIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDK 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           I+G ++   E   V+ HI  +R+K+ +       +++ R +GY  +W
Sbjct: 193 IWG-YEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGYRFNW 238


>gi|126664628|ref|ZP_01735612.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
 gi|126630954|gb|EBA01568.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
          Length = 230

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + +         G         +    L    R D+  ++  L   G   +
Sbjct: 6   ILIVDDESAICEMVTVALEMAGYVCLQAADAKAAHTLIVDKRPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     + +P+I ++        +   +SG DD + KP   RE+LAR+ A+ RR
Sbjct: 64  ELARRLKKDDTTAAIPIIMLTAKVEEDNKILGLESGADDYITKPFSPRELLARLKAVLRR 123

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  ++  E G + +         Q     L   E R+L++ M+++ +  +++Q+   
Sbjct: 124 STPAGVDSALEVGGLTLDPLSHRVSSQFGQLELGPTEYRMLQFFMSHQDRVYSRSQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  ++E  V+ HI +LRK L        + + R  GY  
Sbjct: 184 VWGA-NVYLDERTVDVHIRRLRKALGTHHDH-LIQTVRGAGYRF 225


>gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 224

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +               +  D+  ++  L   G    
Sbjct: 5   ILVVEDETKLAQFIELELKYEGYEVSVAYDGLAGLGAARESNPDLVILDWMLP--GISGP 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   +QVP+I ++    +   +   D+G DD V KP    E+LARV A  RR +
Sbjct: 63  EICRRLRTTGNQVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHLRRNQ 122

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  +   + +    R+      +  L  +E  +LEYL+A+  + + + QI   ++G
Sbjct: 123 TEDPNILQFADLSLNHSTREVYRGQRLIELTVKEFDLLEYLLAHPRQVLTREQILERVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL        V + R +GY +
Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEANNESRLVQTVRGVGYVL 222


>gi|307328971|ref|ZP_07608139.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885333|gb|EFN16351.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 274

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +      G  G +++            ++   D+  ++  L   G   LE
Sbjct: 11  LVVDDDPTVAEVVAGYLGRAGFAVDQAADGPGALARAAARWPDLVVLDLMLP--GMDGLE 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R    VP+I ++     +  +   + G DD V KP   RE++ RV ++ RR +  
Sbjct: 69  VCRALRGRGPVPVIMLTARGDEEDRILGLEIGADDYVTKPFSPRELVLRVESVLRRGRTG 128

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                         A    I + +  R     G    L  RE  +L +L+ + G    + 
Sbjct: 129 PQVPGSSAPAPGGVAHRAGITLDALARRATRDGRELALTVREFDLLSFLLRHPGVAFTRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++   ++G   +  + + V  H+ +LR K+ +       + +   +GY  D
Sbjct: 189 ELMREVWGW--DFGDLSTVTVHVRRLRGKVEDDPAAPRLIQTVWGIGYRFD 237


>gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
          Length = 239

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E      ++ R D+  ++  L       +
Sbjct: 5   ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLP--KMDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR K
Sbjct: 63  EVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +                   +++  +  +   QG    L  +E  +L YL  N+ + + +
Sbjct: 123 LQQEEQVAEAPDEDSILIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 DQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLE 233


>gi|17546253|ref|NP_519655.1| phosphate regulon two-component response regulator transcription
           regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428550|emb|CAD15236.1| probable phosphate regulon two-component response regulator
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 237

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E    L S    D+  ++  L   G+  +
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLP--GKSGV 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              + +RA+    Q+P+I ++     Q  +   D+G DD V KP   +E+LAR+ A+ RR
Sbjct: 63  MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPE-VQGE-----VFPLPRRERRILEYLMANRGKRVAK 170
              +++++      +R+         V  E        L   E R+L +LM +  +  ++
Sbjct: 123 RAPQLTDDVVAINGLRLDPATHRVTAVNSESENPIKLDLGPTEFRLLHFLMTHPERVHSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +Q+   ++G     VEE  V+ HI +LR  L        +++ R  GY +  N
Sbjct: 183 SQLLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSSMIETVRGSGYRLARN 234


>gi|254188385|ref|ZP_04894896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157936064|gb|EDO91734.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 235

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 7   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLP--GKSGI 64

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 65  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124

Query: 119 L--KVSNNRAETGPIRVFSDGRDP--EVQGEVF--PLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+         +  G      L   E R+L + M +  +  ++TQ
Sbjct: 125 RAPQLTEDVVSINGLRLDPATHRVAAQSDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231


>gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 261

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 18/232 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--AREDVSAIEAFLIGKGEKV 60
           +++DD   +           G  +    + + EE L  +   R D   ++  L       
Sbjct: 29  LVVDDEQSIVTLLEYNLKQAGFIV--LTAYDGEEGLHKALEERPDFIILDLMLP--KLDG 84

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR 
Sbjct: 85  IEVCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRT 144

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    + S++    G + +F D  +     +   L  +E  +L YL   +G+ + +
Sbjct: 145 VIHGQEEKQEHSDDSLVVGQLEIFPDRYEAYFAQKRLELTPKEFELLAYLAKYKGRVLTR 204

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            Q+ SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 205 DQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQDTRKPVYIKTIRGLGYKLE 255


>gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
 gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
          Length = 224

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +              S + D+  ++  L       +
Sbjct: 5   ILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIMLPQ--LSGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
           E+ R +R  S +P+I ++   S+   +   DSG DD + KP    E+LAR+ A  R R  
Sbjct: 63  EVLRRLRRESDLPVIMLTARDSVIDKVSGLDSGADDYITKPFAIEELLARIRAALRKRAV 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +    G + +  +     V+G+   L ++E  +L  L+ N+G+ + +  +  +++G 
Sbjct: 123 HTGSILTAGELAMDVERHQVSVRGQSVELTKKEFDLLHQLLENKGRVLTREALLDSVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   E N V+ +I  LR K+    G   + + R +GY I
Sbjct: 182 FDFVGETNSVDVYIRFLRSKIDEAFGIKLIHTVRGVGYVI 221


>gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G ++   N           +  D+  ++  L   G   L
Sbjct: 6   ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLP--GISGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R   S+VP+I ++    +   +   D+G DD + KP +  E+LARV A  RR  
Sbjct: 64  DICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNH 123

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  +   + +  + R+      +  L  +E  +LEYLM++  + +++ QI   ++G
Sbjct: 124 EEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL  +     + + R +GY +
Sbjct: 184 -YDFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223


>gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1]
 gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1]
          Length = 226

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       +DG  +  F +             D++ ++  L       LE
Sbjct: 4   LVVDDEKEIADLVELYLKNDGFEVYKFYTGNEALQCVDVQDIDLAILDIMLPD--ISGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + IR +   P+I ++   +    +     G DD V KP    E++ARV A  RR K  
Sbjct: 62  ICQTIRENYNFPIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQLRRYKTM 121

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N    G + +  D     +  +   L   E  IL  L  ++GK V   QIF  +
Sbjct: 122 TPKEEKNMVTIGALTIDQDNHQCILNNQTLSLTPTEFSILWLLCKHKGKVVTVDQIFQEL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G        + +  HI  LR+K+ +       + +   +GY I
Sbjct: 182 WGEKYYTNSSSSIMVHIRHLREKMDDSAENPKYIQTVWGVGYKI 225


>gi|167562371|ref|ZP_02355287.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis EO147]
 gi|167574332|ref|ZP_02367206.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis C6786]
          Length = 233

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLP--GKSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+           E       L   E R+L + M +  +  ++TQ
Sbjct: 123 RAPQLTEDVVSINGLRLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 231

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  +V  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQKVSTYEVDLMILDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  ++           + +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIE 230


>gi|89896435|ref|YP_519922.1| hypothetical protein DSY3689 [Desulfitobacterium hafniense Y51]
 gi|89335883|dbj|BAE85478.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 232

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  +L  F + +         + D++ ++  L        
Sbjct: 5   ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIEKEKLDLAILDVMLPDV--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 63  SICRQIREKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTK 122

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N+              + +  D  +  +  +   L   E  IL  L +NRG+ V+  ++
Sbjct: 123 YNSAEPNQEEHVIAFSGLVLDMDTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           FS ++G        N V  HI  LR+K+++       + +   +GY I+
Sbjct: 183 FSEVWGDKYFTNSNNTVMVHIRHLREKMQDSAEHPKYIKTVWGVGYKIE 231


>gi|15964431|ref|NP_384784.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|15073608|emb|CAC45250.1| Response regulator of exponential growth motility [Sinorhizobium
           meliloti 1021]
          Length = 223

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 155/223 (69%), Positives = 181/223 (81%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDRALVKDGY +LFG +G+   GF+  EF EW+ S+A  D+ A+EAFLIG+GE  
Sbjct: 1   MIVVVDDRALVKDGYASLFGREGIPSTGFDPREFGEWVSSAADSDIDAVEAFLIGQGEST 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LPR IR  S+ P+I +SD PSL+ TL  FD GVDDVV KP+H REILARVAAI RRL 
Sbjct: 61  FTLPRAIRDRSRAPVIAMSDTPSLENTLALFDCGVDDVVRKPVHPREILARVAAIRRRLT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  + GPIRVF+DGRDPE+ GEVF LPRRERRILEYL+ANRG+RV+K+QIF+AIYG+
Sbjct: 121 AIANFTDIGPIRVFADGRDPEINGEVFALPRRERRILEYLVANRGRRVSKSQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDE VEENVVESHISKLRKKLR KLGFDP+DSKRFLGY IDWN
Sbjct: 181 FDEDVEENVVESHISKLRKKLRKKLGFDPIDSKRFLGYCIDWN 223


>gi|284048184|ref|YP_003398523.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283952405|gb|ADB47208.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 232

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +++     F  +G  +              + + D+  ++  +       LE
Sbjct: 8   LIADDEPQIREILSIYFKKEGFKVIEAADGAEALVQVQAGKPDIILLDIMMPV--LDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S +P+I ++   S    +   + G DD ++KP + RE++ARV A+ RR   S
Sbjct: 66  VCKQVRKISDIPIIMLTAKDSDDDRILGLEIGADDYISKPFNTREVVARVKAVLRRTNAS 125

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E   + +          G       +E  +L  L +N G   ++ Q+   I
Sbjct: 126 MSSQNKQVLEYPNLMINLSEYRVVAFGREITFTAKEMELLWCLASNPGIVFSRNQLLEKI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +G +    +   V++HI ++R KL         + +   +GY  + 
Sbjct: 186 WG-YTYYGDTRTVDTHIKRVRHKLDIPPDSTWDIMTVWGVGYKFEV 230


>gi|78065919|ref|YP_368688.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77966664|gb|ABB08044.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 233

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 5   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLP--GKSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+           E       L   E R+L + M +  +  ++TQ
Sbjct: 123 RAPQLTEDVVAINGLRLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 235

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLP--KMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +  +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVARQVRKNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGA 121

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N+  E G + +  +      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYL 229


>gi|307311573|ref|ZP_07591214.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307318928|ref|ZP_07598359.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|12057231|gb|AAG48153.1| transcriptional regulator [Sinorhizobium meliloti]
 gi|306895342|gb|EFN26097.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899590|gb|EFN30219.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 223

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 156/223 (69%), Positives = 182/223 (81%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDRALVKDGY +LFG +G+   GF+  EF EW+ S+A  D+ A+EAFLIG+GE  
Sbjct: 1   MIVVVDDRALVKDGYASLFGREGIPSTGFDPREFGEWVSSAADSDIDAVEAFLIGQGEST 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L LPR IR  S+ P+I +SD PSL+ TL  FD GVDDVV KP+H REILARVAAI RRL 
Sbjct: 61  LTLPRAIRDRSRAPVIAMSDTPSLENTLALFDCGVDDVVRKPVHPREILARVAAIRRRLT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  + GPIRVF+DGRDPE+ GEVF LPRRERRILEYL+ANRG+RV+K+QIF+AIYG+
Sbjct: 121 AIANFTDIGPIRVFADGRDPEINGEVFALPRRERRILEYLVANRGRRVSKSQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDE VEENVVESHISKLRKKLR KLGFDP+DSKRFLGY IDWN
Sbjct: 181 FDEDVEENVVESHISKLRKKLRKKLGFDPIDSKRFLGYCIDWN 223


>gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 239

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + + EE L+ +  EDV      ++  G    
Sbjct: 6   ILVVDDDPAILELVGYNLSKEGYEV--LKAYDGEEALKIANDEDVDMFIVDIMLPGIDGF 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IRA   +   P+I +S        +   + G DD + KP   RE+LARV A++RR
Sbjct: 64  ELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFRR 123

Query: 119 LKVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           L  +    E          + +  +  + +V+G+   L   E  +L +L  N GK  ++ 
Sbjct: 124 LSAATQSKEERPKKIIARDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 232


>gi|300818279|ref|ZP_07098490.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 107-1]
 gi|300529170|gb|EFK50232.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 107-1]
          Length = 229

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGEHDRMVQTVRGTGYRF 225


>gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 238

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G+ +    + E    LQ S  ++V  +   L+      +
Sbjct: 12  ILVIEDEPTIAESLRVGLTYEGMRVTV--TTEGRSGLQVSEEQEVDLVILDLMLPDIDGM 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA S   P+I ++    +Q  +     G DD + KP    E+LARV A+ RR  
Sbjct: 70  VVCRRLRARSSTLPIIMLTARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRRAG 129

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           VS  +       + + ++ R+  + G    L   E  +LE  M +  +   +  + S ++
Sbjct: 130 VSRPSTVLRIAGLTLDTETREVTLNGRQLELTPTEFALLELFMRHPRRVFTRETLLSRVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G F    + N+VE H+S LR+K+ +      + +   +GY +
Sbjct: 190 G-FTYVGDSNIVEVHMSNLREKIGDH-ERKLIRTIYGVGYCL 229


>gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 232

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G ++   +  E    L      D+  ++  L       L
Sbjct: 4   ILVVDDEPNIREVVGLYLRREGHTVLEASDGEAALRLARQQPPDLVVLDLMLPKV--TGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +++  + P+I ++        +     G DD V KP   RE++ARV A+ RR+  
Sbjct: 62  EVCRRLQSDRRTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVLRRVQP 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       E G +RV    RD +V G+   L  RE  +L +L  +R +   + Q+ 
Sbjct: 122 QPDAPPPDERPIELGALRVDPRTRDVQVAGKSISLTAREFDLLYFLARHRERVFTRDQLM 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G +  + + + V  HI +LR+K+ +       + +   +GY +
Sbjct: 182 ELVWG-YTFSADTSTVTVHIRRLREKIEDDPTAPRYLQTVWGVGYKL 227


>gi|296118440|ref|ZP_06837019.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968581|gb|EFG81827.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 230

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G   E   + + +  L    R DV  +   L+  G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGF--EPIVAHDGKTALAEFERHDVDIVLLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  DVCKQLRATSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGE 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  +   E G +R+  +     V GE   +P +E  +LEYL+ N G+ + + Q+
Sbjct: 122 AAEVDEEFEDQILEGGRVRMDVERHTVSVDGEPVSMPLKEFDLLEYLLRNTGRVLTRGQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
              I+G  D   +   ++ H+ +LR K+  +      + + R LGY  + 
Sbjct: 182 IDRIWGA-DYVGDTKTLDVHVKRLRSKIEAEPSRPQHLVTVRGLGYKYEV 230


>gi|283784214|ref|YP_003364079.1| phosphate regulon two-component system, response regulator
           [Citrobacter rodentium ICC168]
 gi|212380327|gb|ACJ24903.1| PhoB [Citrobacter rodentium]
 gi|282947668|emb|CBG87223.1| phosphate regulon two-component system, response regulator
           [Citrobacter rodentium ICC168]
          Length = 229

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAAIREMVCFVLEQNGFQPVEAEDYDTAVNQLNEPWPDLILLDWMLP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGDNPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDRMVQTVRGTGYRF 225


>gi|166031592|ref|ZP_02234421.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
 gi|166028569|gb|EDR47326.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
          Length = 224

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D + +++  I      G    GF   + +E+L++ A E    I   ++  G   
Sbjct: 1   MIFCVEDDSNIRELVIYTLETTGFKARGFE--DGKEFLEALALETPELILLDIMLPGMDG 58

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LEL   ++A   +  +P+I ++   +    +   D+G DD V KP    E+++R+ A+ R
Sbjct: 59  LELLSKLKASPKNRDIPVIMLTAKGAEYDKVKALDAGADDYVTKPFGMMELVSRIKAVLR 118

Query: 118 RLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +       +    G I + +   +    GEV  L  +E  +L+ LM N    + +  +
Sbjct: 119 RTQKDTQDPQDVIVLGDIEMNTKKHEVTADGEVVTLTLKEYELLKRLMKNPNIVMTRDCL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +D   E   V+ H+  LR+KL        +++ R +GY +
Sbjct: 179 LEDIWG-YDFDGETRTVDVHVRTLRQKLGKSGEK--IETVRGVGYRM 222


>gi|163731855|ref|ZP_02139302.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter litoralis Och 149]
 gi|161395309|gb|EDQ19631.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter litoralis Och 149]
          Length = 230

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D +  ++        +G ++    + E    L      D+  ++  +       
Sbjct: 8   LVLVVEDESAQREVLTYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPN--LSG 65

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +++  +    P+I +S        +   ++G DD V KP    E++ARV +  R
Sbjct: 66  IEVCRRLKSKPETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRSQLR 125

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++ +    R E   I + +             L   E R+L   M   G+  ++ Q+  
Sbjct: 126 RVRPAATGERLEFEDIVLDASSHRVSRGKSELKLGPTEFRLLSTFMEKPGRVFSREQLLD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ HI +LRK L    G DP+ + R  GY++
Sbjct: 186 RVWGR-DIYVDTRTVDVHIGRLRKALTQFGGSDPLRTVRGAGYAL 229


>gi|159897333|ref|YP_001543580.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890372|gb|ABX03452.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D AL+ D        +G ++   +       L  + + D+  ++  L        
Sbjct: 4   ILLVEDEALLADTLRYNLEREGYTVLSASDGVTGLDLARAEQPDLLILDVMLP--KLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + RI+R  + +P++ ++        +   + G DD V KP    E+LARV AI RR   
Sbjct: 62  SVCRILRRETNIPIMMLTARQDEVDRIAGLELGADDYVIKPFSLGELLARVRAILRRTDR 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V         ++V +  R          L ++E  +L  LM NRG  +++  +   
Sbjct: 122 QPTGVERELLTAANLKVDTGSRRVFRDNNEITLAQKEFDLLVCLMRNRGMALSRDLLLER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G +D   +   V+ H+  LR+K+  +      + + R +GY  +
Sbjct: 182 VWG-YDFPGDSRTVDVHVRWLREKVEVDPSNPIYIQTVRGIGYRFN 226


>gi|90961025|ref|YP_534941.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|227891713|ref|ZP_04009518.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299933|ref|ZP_07206164.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820219|gb|ABD98858.1| Two-component response regulator [Lactobacillus salivarius UCC118]
 gi|227866516|gb|EEJ73937.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300213968|gb|ADJ78384.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
 gi|300852478|gb|EFK80131.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 236

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +  + + + EE LQ     +   I   L+      L
Sbjct: 4   ILVVDDEKPISDIVKFNLTKEGYDV--YTAYDGEEALQQVKEVEPDLILLDLMLPKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRQSA 121

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N+    G + +  +       G+   L  RE  +L YL  + G+ + + 
Sbjct: 122 VAAKSSAEDDKNSEITVGDLTIHPEAYTVSKNGQRIELTHREFELLHYLAQHLGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYL 230


>gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1]
          Length = 235

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLP--KMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +  +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVARQVRKNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 121

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N+  E G + +  +      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYL 229


>gi|88798651|ref|ZP_01114235.1| Two component Transcriptional regulator, Winged helix family
           protein [Reinekea sp. MED297]
 gi|88778751|gb|EAR09942.1| Two component Transcriptional regulator, Winged helix family
           protein [Reinekea sp. MED297]
          Length = 224

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +    + G   +     +   +  ++   D+  ++  L       +
Sbjct: 3   ILVVEDDRTLADYIVRGLTEAGYRADSCTDGKDALYRAAAEDYDLIILDRMLPSV--DGM 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA ++  P++ +S    +   ++   +G DD + KP    E+LARV  + RR  
Sbjct: 61  TILRTLRASNKTLPVLILSALSDVDQRVEGLSAGADDYLTKPFAFAELLARVQVLLRRPG 120

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +   ETG IR+    +   VQG       RE R+LEYLM + G+ V++T +   +
Sbjct: 121 ADSRQSTVLETGAIRLDLSRQKVWVQGREIAFQPREFRLLEYLMRHAGQVVSRTMLLENV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +    + NVV+ HIS+LR+KL +      + + R  GY  +
Sbjct: 181 WD-YHFDPQTNVVDVHISRLRQKLDHGQETSVIRTVRGAGYVFE 223


>gi|186475652|ref|YP_001857122.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192111|gb|ACC70076.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 233

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLP--GKSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +++           +       L   E R+L + M +  +  ++TQ
Sbjct: 123 RAPQLTEDVVAINGLKLDPATHRVAAHAQGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|300779924|ref|ZP_07089780.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534034|gb|EFK55093.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 233

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 106/231 (45%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G   E   + + +  L      +V  +   L+  G    
Sbjct: 5   ILIVEDEESLADPLAYLLRKEGF--EAVVAPDGQAALTQFEANNVDLVLLDLMLPGMSGT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + +RA S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 63  DVCKKLRATSDVPIIMVTARDTEIDKVVGLELGADDYVTKPYSTRELIARIRAVLRRRSD 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   + S N  E G +R+  +     V  +  P+P +E  +LEYLM N G+ + + 
Sbjct: 123 VADPPGEEESSENILEGGRVRLDVERHTVYVDDQPVPMPLKEFDLLEYLMRNAGRVLTRG 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+  +    + + + R LGY  +
Sbjct: 183 QLIDRIWG-SDYVGDTKTLDVHVKRLRTKIEQEPSRPEQLITVRGLGYKFE 232


>gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G +     + +    L+   R     +   L+  G    +
Sbjct: 5   LIVEDEESFADPLAFLLRKEGFTAAVAGTGQA--ALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR    
Sbjct: 63  VCKQLRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEP 122

Query: 123 NNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  E        GP+R+  +     V G    LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 GSEGELAPLVLSAGPVRMDVERHVVTVDGADVSLPLKEFDLLEYLLRNVGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+    G    + + R LGY  +
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGYKFE 228


>gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 261

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   V++     F    + L           +    + DV  ++  +        E
Sbjct: 36  LVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQ--LDGFE 93

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IR     P+I ++        +   + G DD V KP   REI+AR+ AI RRL+  
Sbjct: 94  ACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQPK 153

Query: 123 NNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +           + +  D R+  V GE      +E  +L  L+ + G   ++ Q+ 
Sbjct: 154 PKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQLL 213

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G FD   +   ++ HI K+R++L +KL +D + +   +GY  
Sbjct: 214 EQVWG-FDYFGDVRTIDVHIKKIRQRL-DKLPYDCIQTVWGIGYKF 257


>gi|26246403|ref|NP_752442.1| transcriptional regulator PhoB [Escherichia coli CFT073]
 gi|26106801|gb|AAN78986.1|AE016756_169 Phosphate regulon transcriptional Regulatory protein phoB
           [Escherichia coli CFT073]
          Length = 229

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEVPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|94499897|ref|ZP_01306433.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
 gi|94428098|gb|EAT13072.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
          Length = 232

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G      ++ +    L      ++  ++  L   G   L
Sbjct: 8   ILIVDDEASIREMIAVALEMAGYECIEASNTQDAYSLIIDEHPEMILLDWMLP--GTSGL 65

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R ++     ++VP+I ++        +   ++G DD + KP   RE++AR+ A+ RR
Sbjct: 66  EFARRLKRDDRTNEVPIIMLTAKGEEDNKVLGLEAGADDYITKPFSPRELVARLKAVLRR 125

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  E   + +           E   +   E R+L++ M ++ +  ++TQ+   
Sbjct: 126 TTPQGIEDPIEVNGLILDPVCHRVSANDEALDIGPTEYRLLQFFMTHQERAYSRTQLLDQ 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L +      + + R  GY  
Sbjct: 186 VWGG-NVYVEERTVDVHIRRLRKALGSNYEH-LIQTVRGTGYRF 227


>gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 224

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++       G+ G +     S      +  +   D+  ++  +   GE   
Sbjct: 4   ILIIDDEADMRHLIEMYLGNSGFTCFSAESGFEAYGILENNVMDLVILDIMMP--GEDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+   IR  S VP+I +S        +     G DD + KP    E++AR+ A+ RR   
Sbjct: 62  EVCSRIRGKSNVPIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVLRRTGG 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           LK   +  + G I +    R   V G    L  +E  +L + + ++ + +++ Q+   I+
Sbjct: 122 LKSDMDSIQIGKITIDKKARKVTVAGIQVTLTLKEYELLLFFIEHKNQALSREQLLEYIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D       V++HI  LR KL      D + +   +GY  + 
Sbjct: 182 GI-DYTGSLRTVDTHIKTLRMKL---GVGDYIQTVWGVGYKFEV 221


>gi|229084208|ref|ZP_04216492.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228699086|gb|EEL51787.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 233

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G S +    S E    L      D+  ++  L   G+  
Sbjct: 6   ILLIDDETAILQLLTTILQKEGFSHITTATSAEKALLLVEQKHFDLMILDVMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++  IIR  +  P+  ++   S    +  F  G DD + KP +  E++AR+ A  RR  
Sbjct: 64  FDICPIIRQKTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHM 123

Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +         G +++     + +V GE+     +  ++L +   +     +K +I+
Sbjct: 124 KQTPQTIKEYTLSFGRVQIDKHAAELQVDGEIVECSAQLFQLLLFFCEHPNYVFSKEEIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G      ++N V  HI KLR+K+  +      + + R LGY  
Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPKYIKTIRGLGYKF 230


>gi|269140696|ref|YP_003297397.1| two-component response regulator [Edwardsiella tarda EIB202]
 gi|267986357|gb|ACY86186.1| two-component response regulator [Edwardsiella tarda EIB202]
 gi|304560480|gb|ADM43144.1| Two-component response regulator [Edwardsiella tarda FL6-60]
          Length = 242

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ +       D+G  +      +    L      D   ++  L   G   L
Sbjct: 11  ILVVEDDTLIAELLTLHLCDEGYQVTHAADGDRGMALVEQGGWDALILDLMLP--GVDGL 68

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA ++  P+I  S   S    +   + G DD + KP    E++ARV A++RR +
Sbjct: 69  DICRRVRAMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQE 128

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R   GP+ +    R   V      L  RE  +L +   + G+  ++ Q+
Sbjct: 129 AMGRNLMLEGGRLSYGPLTIDPMARVVWVGERPIELTPREFDLLYFFARHPGQVFSRLQL 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 189 LDKVWG-YQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGYKF 235


>gi|257880368|ref|ZP_05660021.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257882229|ref|ZP_05661882.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257885424|ref|ZP_05665077.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257888221|ref|ZP_05667874.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257891026|ref|ZP_05670679.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894279|ref|ZP_05673932.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257896891|ref|ZP_05676544.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260562331|ref|ZP_05832845.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208378|ref|ZP_05923028.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566829|ref|ZP_06447239.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|314939997|ref|ZP_07847192.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943532|ref|ZP_07850297.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948950|ref|ZP_07852317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314950769|ref|ZP_07853845.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314994105|ref|ZP_07859422.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314998036|ref|ZP_07862928.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|257814596|gb|EEV43354.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257817887|gb|EEV45215.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257821280|gb|EEV48410.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257824275|gb|EEV51207.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257827386|gb|EEV54012.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830658|gb|EEV57265.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257833456|gb|EEV59877.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260073255|gb|EEW61596.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260077439|gb|EEW65158.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161360|gb|EFD09250.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|313587966|gb|EFR66811.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313591472|gb|EFR70317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313597049|gb|EFR75894.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597770|gb|EFR76615.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313640767|gb|EFS05347.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644649|gb|EFS09229.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 244

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +  + + + EE L+  A  +   I   L+      LE
Sbjct: 15  LVVDDEKPISDIVKFNLAKEGYDV--YTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR    
Sbjct: 73  VAREVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATA 132

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +      G + +  +      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 133 AKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLL 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 193 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 238


>gi|225574599|ref|ZP_03783209.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038213|gb|EEG48459.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM
           10507]
          Length = 225

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 103/228 (45%), Gaps = 10/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       + G  ++GF   +         + D++ ++  L    E  
Sbjct: 3   LIYVVEDDKNIREIESFALKNAGYEIQGFVCAKDFYTAMLRQKPDLALLDVMLPD--EDG 60

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +R+      +P++ ++   +    +   D G DD + KP    E+++RV A+ R
Sbjct: 61  LEIVRKLRSDRMTKHIPILMVTAKTTEIDKVKGLDMGADDYMTKPFGVMELISRVKALLR 120

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R ++       + GP+ +  + R     G+   L  +E  +L  LM N G  +++  I +
Sbjct: 121 RSQIIPEEEVIQVGPVTMDQNKRKVSAYGKACELTYKEYELLHLLMQNAGIVISRDVILN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++G  D   E   ++ HI  LRKKL+       + + R +GY  + N
Sbjct: 181 RVWGT-DYEGESRTIDMHIKTLRKKLKEAGA--MIQTVRNVGYVFNEN 225


>gi|254488622|ref|ZP_05101827.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
 gi|214045491|gb|EEB86129.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
          Length = 229

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D    ++        +G  +    + E    L + A  D+  ++  +       +
Sbjct: 8   ILLVEDEPAQREVLAYNLESEGYDVRRAENGEEAMLLVAEALPDLVILDWMMPL--LSGI 65

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++       +P+I +S        +   ++G DD V KP   RE++ARV    RR
Sbjct: 66  EVCRQLKTREDTRNIPVIMLSARSEEVDAVRGLETGADDYVVKPYSMRELMARVRTQLRR 125

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++ +    +     I +  +        +   L   E R+L  L+   G+  ++ Q+   
Sbjct: 126 IRPAATGGQLCYQDITLDPERHRVNRATQELKLGPTEYRLLVTLLERPGRVFSRDQLLDH 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V+   V+ HI++LRK L    G DP+ + R  GY++
Sbjct: 186 VWGR-DIFVDTRTVDVHIARLRKALTQHGGDDPIRTVRGAGYAL 228


>gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
 gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
          Length = 299

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G   E          L S    D+  ++  +       +
Sbjct: 75  ILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPF--MDGM 132

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
              R +RA     P+I ++        L   + G DD V KP   RE++ARV A+  R  
Sbjct: 133 TCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTM 192

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + S+     G + + +      V GE   L  +E  +L +L +N+G  +++ +I   
Sbjct: 193 PRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQK 252

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   E+  V++H+  LR  L    G   + +   +GY  D
Sbjct: 253 VWN-YDYFGEDRTVDTHVKMLRGHLGKCRG--YIATVWGIGYKFD 294


>gi|269836402|ref|YP_003318630.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269785665|gb|ACZ37808.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++          G  +      E      ++   D+  ++  L        
Sbjct: 4   ILVVEDEASIRTTIAYNLKKAGHDVRTVADGEAAIAQANADPPDLVILDIMLPT--IDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ ++        +   + G DD V KP   RE++ARV A+ RR ++
Sbjct: 62  DVCRHIRRSSSVPILMLTARDDEVDRVVGLEIGADDYVTKPFSMRELMARVKALLRRREL 121

Query: 122 SNNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           E G +R+          G    L  +E  +L YL  +RG     
Sbjct: 122 LEQELASNPDGREEVFEIGTLRIDPAAYRVTRNGREVQLTPKEMDLLVYLARHRGNVCPT 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +I  A++G +D   +   V  HI  LR+KL  +      +++ R +GY +
Sbjct: 182 RRILEAVWG-YDYYGDNRTVAVHIHGLREKLEEDPRQPRLIETVRGVGYRL 231


>gi|69247564|ref|ZP_00604398.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227552548|ref|ZP_03982597.1| VicR family response regulator [Enterococcus faecium TX1330]
 gi|258614681|ref|ZP_05712451.1| DNA-binding response regulator VicR [Enterococcus faecium DO]
 gi|293378479|ref|ZP_06624642.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293553004|ref|ZP_06673649.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|293559841|ref|ZP_06676356.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293567713|ref|ZP_06679056.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294616677|ref|ZP_06696447.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|294619190|ref|ZP_06698676.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium E1679]
 gi|294623110|ref|ZP_06701996.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|68194788|gb|EAN09265.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227178297|gb|EEI59269.1| VicR family response regulator [Enterococcus faecium TX1330]
 gi|291589648|gb|EFF21453.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291590431|gb|EFF22170.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|291594572|gb|EFF25963.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium E1679]
 gi|291597479|gb|EFF28644.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291602810|gb|EFF33017.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291606205|gb|EFF35624.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|292642808|gb|EFF60955.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 234

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +  + + + EE L+  A  +   I   L+      LE
Sbjct: 5   LVVDDEKPISDIVKFNLAKEGYDV--YTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR    
Sbjct: 63  VAREVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATA 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +      G + +  +      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 AKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 228


>gi|89897137|ref|YP_520624.1| hypothetical protein DSY4391 [Desulfitobacterium hafniense Y51]
 gi|89336585|dbj|BAE86180.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 237

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 98/222 (44%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +        +G  +   +  +           DV  ++  L   G+  L 
Sbjct: 8   LVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLP--GQDGLS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +RA   +P+I ++        +   + G DD V KP   RE++AR+ A+ RR + +
Sbjct: 66  LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +     + +   + + +D R   V      +  RE  +L +L  N  +   + ++  A++
Sbjct: 126 DPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   ++  V+ HI +LR KL + L  + + +   +GY  
Sbjct: 186 G-YDYFGDQRTVDVHIRRLRTKLAS-LPHEYLQTVWGVGYKF 225


>gi|152968913|ref|YP_001334022.1| transcriptional regulator PhoB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206576178|ref|YP_002240146.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella pneumoniae 342]
 gi|238893323|ref|YP_002918057.1| transcriptional regulator PhoB [Klebsiella pneumoniae NTUH-K2044]
 gi|262042405|ref|ZP_06015566.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288936893|ref|YP_003440952.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290510051|ref|ZP_06549421.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. 1_1_55]
 gi|330006877|ref|ZP_08305751.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. MS 92-3]
 gi|1172481|sp|P45605|PHOB_KLEPN RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|149295|gb|AAA25122.1| phosphate regulatory protein phoB [Klebsiella pneumoniae]
 gi|150953762|gb|ABR75792.1| positive response regulator for pho regulon, sensor is PhoR (or
           CreC) [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206565236|gb|ACI07012.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella pneumoniae 342]
 gi|238545639|dbj|BAH61990.1| positive response regulator for pho regulon [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259040237|gb|EEW41347.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288891602|gb|ADC59920.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289776767|gb|EFD84765.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. 1_1_55]
 gi|328535683|gb|EGF62130.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. MS 92-3]
          Length = 229

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +   +G         +      +    D+  ++  L G  G + 
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L +       +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|158334650|ref|YP_001515822.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158304891|gb|ABW26508.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 224

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +   N           ++ D+  ++  L   G   +
Sbjct: 5   ILLVEDETKLAQFVEMELTHEGYQVTVANDGIGGLTAARESQPDLILLDWMLP--GFSGV 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA    VP+I ++    +   ++  D+G DD + KP    E+LARV A  RR +
Sbjct: 63  EVCRRLRATGDKVPVILLTAKDEISDRVEGLDAGADDYMVKPFSIEELLARVRAHLRRTQ 122

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  E   + +    R+         L  +E  +L YLM +  + + + +I   ++G
Sbjct: 123 EEDPDVLEFSNLTLNQRTREIFRGERSIELTAKEFDLLVYLMMHPRQVLTRDRILEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL        + + R +GY +
Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEENQEKRLIQTVRGVGYVM 222


>gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 231

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  +V  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQKVSTYEVDLMILDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  ++           + +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVMNGEKLIHTVWGVGYKIE 230


>gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
          Length = 234

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +  F + + EE L+     +   I   L+      L
Sbjct: 4   ILVVDDEKPILEIVKYNLVKEGYEV--FTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + +    G + +  D      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYL 228


>gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
 gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
          Length = 236

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 100/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +      +    L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGKAGYELALSEKPDLIVLDLMLPE--MDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R +   VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQNKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  +  +  +Q E+  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEAVEENSDEMEAMILIGDLKILPESYEVYLQDELLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR KL  +      + + R  GY ++
Sbjct: 182 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKLETDTKQPKYIKTIRGFGYKME 233


>gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 239

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +    +   +G S+              +   D+  ++  L   G+  + 
Sbjct: 17  LVVDDDSALAEMLGIVLTKEGWSVTTCGDGGRALTAFRAVNPDLVLLDVMLP--GKDGMS 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP+I ++        +   ++G DD V KP   +E+LAR  A  RR    
Sbjct: 75  VCREIRAESGVPIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRRYTPP 134

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +   G + +       + QGE+ PL   E  +L  L     + +++  +   ++G +
Sbjct: 135 QQAQLAVGDLTIDVQSHIVQRQGEIIPLTPLEFDLLVALARKPMQVLSRETLLEQVWG-Y 193

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 194 QHAGDTRLVNVHVQRLRAKIESDPENPTIVQTVRGVGYR 232


>gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
 gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
          Length = 231

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  +V  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQKVSTYEVDLMILDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  ++           + +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIE 230


>gi|238760009|ref|ZP_04621161.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           aldovae ATCC 35236]
 gi|238701762|gb|EEP94327.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           aldovae ATCC 35236]
          Length = 260

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 96/229 (41%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G        LE E++  +  R      D+  ++  L   
Sbjct: 36  ILVVEDEAPIREMVCFVLEQNGY-----QPLEAEDYDSAVMRLSEPFPDLVLLDWMLP-- 88

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 89  GGSGIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIK 148

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +               +   E ++L + M +  +  ++ 
Sbjct: 149 AVMRRISPMAVEEVIEMQGLSLDPSSHRVMSNEHALDMGPTEFKLLHFFMTHPERVYSRE 208

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 209 QLLNYVWGT-NVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 256


>gi|148241878|ref|YP_001227035.1| two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. RCC307]
 gi|147850188|emb|CAK27682.1| Two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. RCC307]
          Length = 241

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF----NSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   +++        +G  ++       +LE  +    +   D+  ++  L   G
Sbjct: 14  LLVVEDDDTIRETIAEALSSEGFEVDAVGSGSTALERFKGSPDNPSCDLVLLDLMLP--G 71

Query: 58  EKVLELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L++ R + R     P+I +S   S    +   + G DD + KP   RE++AR  A+ 
Sbjct: 72  VSGLDVCRYMRRRGFSTPIIVVSARDSETDRVVGLEIGADDYLVKPFGMRELVARCRALL 131

Query: 117 RRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR        +        I ++ +       G+   L  +E R+LE  M +  +  ++ 
Sbjct: 132 RRSARNGDSGAKEVLRFDEITLYPEECRVTRGGQEVNLSPKEYRLLEVFMQSPKRVWSRD 191

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++   ++G+ D   +   V+ HI  LR+KL  N      + + R  GY  
Sbjct: 192 KLLERVWGI-DFMGDSKTVDVHIRWLREKLETNPSAPTYILTVRGFGYRF 240


>gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 248

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  +V  +   ++      L
Sbjct: 22  ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQKVSTYEVDLMILDIMMPKRNGL 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 80  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 139

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  ++           + +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 140 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 200 FERVWNE-DGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIE 247


>gi|91784528|ref|YP_559734.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|170695467|ref|ZP_02886612.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187924829|ref|YP_001896471.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|296158187|ref|ZP_06841019.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307730483|ref|YP_003907707.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|323526816|ref|YP_004228969.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1001]
 gi|91688482|gb|ABE31682.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
 gi|170139658|gb|EDT07841.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187716023|gb|ACD17247.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|295891523|gb|EFG71309.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307585018|gb|ADN58416.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
 gi|323383818|gb|ADX55909.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 233

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLP--GKSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +++           E       L   E R+L + M +  +  ++TQ
Sbjct: 123 RAPQLTEDVVAINGLKLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 235

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 99/219 (45%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+D     F  +G  +    +      +    + DV  ++  L   G   LE
Sbjct: 19  LIVDDEPQVRDLLQMGFSYEGFQVFLATNGPDATQVAQEQQPDVVILDLMLP--GYDGLE 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    +P+I ++    +   +   D+G DD + KP   RE++AR  A+ RR   +
Sbjct: 77  VTRRLRRSRDLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRRRGNN 136

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      I +           +      RE  +LE+ + N  + +++  I S ++G +
Sbjct: 137 IADILTFQGITLNRGTHQVTFHDQPIDFTPREFDLLEFFLMNPRQALSRDMIMSRVWG-Y 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   ++N+VE +I  LR+KL +      + + R +GY++
Sbjct: 196 DYMGDDNIVEVYIRHLREKLHDTP-PRLLQTVRGVGYTL 233


>gi|163790938|ref|ZP_02185361.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873780|gb|EDP67861.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 235

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +  F + + EE L+         I   L+   +  L
Sbjct: 4   ILVVDDEKPISDIVKFNLTKEGYEV--FTAYDGEEALEKVEEVLPDLIILDLMLPKKDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R +  +P+I ++   S    +   + G DD V KP  +RE+ ARV A  RR   
Sbjct: 62  EVCREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELAARVKANLRRHDN 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +V  N  E G + V  D      +G    L  RE  +L YL  + G+ + +  
Sbjct: 122 AKTQVVEEVETNDIEVGALTVHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTWLVTRRGVGYYL 229


>gi|219667004|ref|YP_002457439.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537264|gb|ACL19003.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 237

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 98/222 (44%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +        +G  +   +  +           DV  ++  L   G+  L 
Sbjct: 8   LVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLP--GQDGLS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +RA   +P+I ++        +   + G DD V KP   RE++AR+ A+ RR + +
Sbjct: 66  LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +     + +   + + +D R   V      +  RE  +L +L  N  +   + ++  A++
Sbjct: 126 DPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   ++  V+ HI +LR KL + L  + + +   +GY  
Sbjct: 186 G-YDYFGDQRTVDVHIRRLRTKLAS-LPHEYLQTVWGVGYKF 225


>gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +   +      E    +    + D+  ++  L        E
Sbjct: 6   LIVEDDPNLLKTLKYNLNKESYDVVIAADGEQALEVARKEKPDLILLDIMLP--KLSGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + RI+R     P++ ++        +   + G DD V KP   RE++ARV A+ RR ++ 
Sbjct: 64  VCRILRKEMNSPILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAMLRRTQIM 123

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   + G IRV  D     +   +  L  +E  +L +L  N+G   ++ Q+   
Sbjct: 124 ETKPSEDKIIKIGDIRVDIDRHQASLAEVILELKPKEFDLLAFLARNKGLVFSREQLLEK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++G +D A +   V+ HI  LR+K+ N  G    + + R  GY ++
Sbjct: 184 VWG-YDYAGDTRTVDVHIRWLRQKIENDPGNPTYLVTVRGTGYKLE 228


>gi|209520876|ref|ZP_03269617.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295677130|ref|YP_003605654.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|209498683|gb|EDZ98797.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295436973|gb|ADG16143.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 233

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G       + E    L S    D+  ++  L   G+  +
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAHNLISDVLPDLVLLDWMLP--GKSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 63  SFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +++           E       L   E R+L + M +  +  ++TQ
Sbjct: 123 RAPQLTEDVVAINGLKLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|291459772|ref|ZP_06599162.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417562|gb|EFE91281.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 233

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        DG  +  F +   +E L    +E++  +   ++  G   LE
Sbjct: 7   LVVDDEKEIAELVEIYLVSDGYKV--FKAYNADEALLIMKQEEIHLVLLDVMMPGMNGLE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           L R IR  S +P+I +S   +    +     G DD V KP +  E+ ARV +  RR    
Sbjct: 65  LCRKIRESSNIPIIMLSAKSADLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYTQL 124

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + + +      + +  D     ++GE   L   E  IL  L ++ GK  +  +I
Sbjct: 125 NPNSTNEFAGSEINIRNMTINRDNHKVVIEGEDVRLTPIEFEILYLLASHPGKVFSTDEI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI +LR K+  ++     + +   +GY I+
Sbjct: 185 FEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDQRENKIITTVWGVGYKIE 232


>gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 229

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G  +                  D+  ++ +L       L
Sbjct: 6   ILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKESPDLVILDLWLPD--LDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I +S        +  F  G DD V KP    E++ RV A+ RR++ 
Sbjct: 64  EVCRQLRAKYAIPVIIVSARGEEADKIAGFTLGADDYVTKPFSPAELVLRVKAVLRRVQG 123

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S+            + +    R  E+ G    L  RE  +L  L ++  +  ++ Q+ + 
Sbjct: 124 SDSWKGREVIRVRGLVIDRASRTVELNGVPINLTAREFDLLWILASHPNRVFSRDQLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++   +   +   V   I +LR+KL       + + +   +GY  
Sbjct: 184 VW-KNEFGADPATVTVLIRRLRQKLEKDPEKPELIKTVWGVGYKF 227


>gi|138895848|ref|YP_001126301.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248740|ref|ZP_03147440.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267361|gb|ABO67556.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211616|gb|EDY06375.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 241

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 96/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++   + +    L+ +   D   I   L+  G+  +
Sbjct: 10  ILVVDDEERIRRLLKMYLERENYVID--EAGDGNVALEKALANDYDVILLDLMLPGKDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR H   P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 68  EVCKEIREHKTTPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D     V G+   L  +E  +L +L  +  K   + Q
Sbjct: 128 ATYAPVETTTKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++HI +LR+KL   +      + +   +GY  +
Sbjct: 188 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237


>gi|304413082|ref|ZP_07394555.1| Response regulator with a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
 gi|304283925|gb|EFL92318.1| Response regulator with a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
          Length = 229

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    L   +G       +        +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEVAIREMLCLLLQQNGYQPLAAENYGNAVASLTGLLPDLVLLDWMLP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + IR       +P+I ++     +  +   + G DD + KP   +E++ARV A+ RR
Sbjct: 63  QFIQHIRREMLTRSIPVIMLTARGEEEDRVCGLELGADDYITKPFSPKEVVARVRAMIRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +    E   + +           +V  +   E ++L + MA   +   + Q+ + 
Sbjct: 123 IVPTTTKEIIEIQGLILDPSSHRVIANEQVLAMGPTEFKLLHFFMARPERVYNREQLLNY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKVLEKNGHDKMIQTVRGAGYRF 225


>gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 229

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G +     ++  ++ L+   R     +   L+  G    +
Sbjct: 5   LIVEDEESFADPLAFLLRKEGFT--AAVAVTGQQALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR    
Sbjct: 63  VCKQLRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEP 122

Query: 123 NN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +           GP+R+  +     V G    LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 GSDGELAPLVLSAGPVRMDVERHVVTVDGGEVSLPLKEFDLLEYLLRNVGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+    G    + + R LGY  +
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGYKFE 228


>gi|121535090|ref|ZP_01666907.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306340|gb|EAX47265.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 230

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G  +           L    R D+  ++  L   G   L
Sbjct: 5   ILIVEDEANIRELVRFNLAKEGYVVLEAEDGNAALALARRERPDLIVLDLMLP--GMDGL 62

Query: 62  ELPRIIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ RI++  S+     +I ++        +   + G DD + KP   RE+LAR+ A+ RR
Sbjct: 63  DVCRILKGSSETAGMAIIMLTAKAEEVDKIIGLELGADDYMVKPFSPRELLARIKAVLRR 122

Query: 119 LKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            K           G +++     +  +      L  +E  +L+  + + GK   + Q+  
Sbjct: 123 SKRDAPLAGELVVGNLKLNFSRYEAHIGKVKLELTPKEFELLKLFVTDMGKVFTREQLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G ++   +   V+ HI  LR KL  + +  + +++ R +GY  
Sbjct: 183 KVWG-YEYYGDTRTVDVHIRHLRAKLSIDPVLAEAIETVRGVGYRF 227


>gi|53719003|ref|YP_107989.1| phosphate regulon two-component system response regulator
           [Burkholderia pseudomallei K96243]
 gi|53725530|ref|YP_102547.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
           23344]
 gi|76810912|ref|YP_333028.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710b]
 gi|83719375|ref|YP_443280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|121599078|ref|YP_992631.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei SAVP1]
 gi|124383508|ref|YP_001026567.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10229]
 gi|126438629|ref|YP_001058533.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 668]
 gi|126451028|ref|YP_001080148.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10247]
 gi|126454333|ref|YP_001065793.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106a]
 gi|134282840|ref|ZP_01769543.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 305]
 gi|167002167|ref|ZP_02267957.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei PRL-20]
 gi|167582296|ref|ZP_02375170.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis TXDOH]
 gi|167621266|ref|ZP_02389897.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis Bt4]
 gi|217423497|ref|ZP_03454998.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 576]
 gi|226196210|ref|ZP_03791795.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pakistan 9]
 gi|237811787|ref|YP_002896238.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei MSHR346]
 gi|238562776|ref|ZP_00439864.2| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei GB8 horse 4]
 gi|242315800|ref|ZP_04814816.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106b]
 gi|254177845|ref|ZP_04884500.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei ATCC 10399]
 gi|254180195|ref|ZP_04886794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1655]
 gi|254197520|ref|ZP_04903942.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei S13]
 gi|254199458|ref|ZP_04905824.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei FMH]
 gi|254205772|ref|ZP_04912124.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei JHU]
 gi|254260613|ref|ZP_04951667.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710a]
 gi|254298030|ref|ZP_04965483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 406e]
 gi|254358828|ref|ZP_04975101.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei 2002721280]
 gi|257139516|ref|ZP_05587778.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|52209417|emb|CAH35362.1| phosphate regulon two-component system response regulator
           [Burkholderia pseudomallei K96243]
 gi|52428953|gb|AAU49546.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
           23344]
 gi|76580365|gb|ABA49840.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710b]
 gi|83653200|gb|ABC37263.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|121227888|gb|ABM50406.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei SAVP1]
 gi|124291528|gb|ABN00797.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10229]
 gi|126218122|gb|ABN81628.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 668]
 gi|126227975|gb|ABN91515.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106a]
 gi|126243898|gb|ABO06991.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10247]
 gi|134245926|gb|EBA46017.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 305]
 gi|147749054|gb|EDK56128.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei FMH]
 gi|147753215|gb|EDK60280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei JHU]
 gi|148027955|gb|EDK85976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei 2002721280]
 gi|157807759|gb|EDO84929.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 406e]
 gi|160698884|gb|EDP88854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei ATCC 10399]
 gi|169654261|gb|EDS86954.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei S13]
 gi|184210735|gb|EDU07778.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1655]
 gi|217393355|gb|EEC33376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 576]
 gi|225931796|gb|EEH27798.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pakistan 9]
 gi|237506644|gb|ACQ98962.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei MSHR346]
 gi|238521934|gb|EEP85382.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei GB8 horse 4]
 gi|242139039|gb|EES25441.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106b]
 gi|243062154|gb|EES44340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei PRL-20]
 gi|254219302|gb|EET08686.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710a]
          Length = 233

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G       + E  + L S    D+  ++  L   G+  +
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLP--GKSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDP--EVQGEVF--PLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+         +  G      L   E R+L + M +  +  ++TQ
Sbjct: 123 RAPQLTEDVVSINGLRLDPATHRVAAQSDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|270263528|ref|ZP_06191797.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042412|gb|EFA15507.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 229

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 97/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G        LE E++  +  R      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGY-----QPLEAEDYDSAVTRLSEPFPDLVLLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 58  GGSGIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +           +   +   E ++L + M +  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 178 QLLNHVWGT-NVYVEDRTVDVHIRRLRKALETTGHDKMVQTVRGTGYRF 225


>gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 231

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  +V  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQMISTYEVDLMILDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSSKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|89896369|ref|YP_519856.1| hypothetical protein DSY3623 [Desulfitobacterium hafniense Y51]
 gi|219667803|ref|YP_002458238.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335817|dbj|BAE85412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538063|gb|ACL19802.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD+ ++ +   A    +G +    ++ + EE LQ +       I   L+      +
Sbjct: 7   ILICDDQLIIHETIAAYLKAEGFTYG--SAYDGEEALQKAYETAPDLIILDLMMPKLSGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  + VP+I ++        +   + G DD + KP   RE++ARV  + RR   
Sbjct: 65  EVCRTLRKTTDVPIIMLTAKGEEIDKILGLELGADDYIVKPFSPREVVARVKTVLRRKLP 124

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K +    +   + +     +  + G       +E  +L  L A+ G+   + QI   +
Sbjct: 125 QSKDTEPILKYDGLEINISSYELRLNGTPVSCTPKEVEVLYLLAAHPGQVFNREQIIQNV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G  D   +   V++ I ++R+KL  +     + S   +GY  + 
Sbjct: 185 WG-SDYFGDTRSVDTQIKRIRQKLAGEKMKWGIKSIYGVGYKFEV 228


>gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 231

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  +V  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQMISTYEVDLMILDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  ++             +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|229084387|ref|ZP_04216667.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228698927|gb|EEL51632.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 219

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD + ++        + G       + +    +  +   D   ++  +       +E
Sbjct: 2   LLVDDESDMRQLVGMYLDNFGYEWGEAENGKDALHMLQAEHYDFVILDIMMPE--MNGIE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR  S VP+I ++        ++    G DD + KP    E++AR+ A+ RR    
Sbjct: 60  VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G IR+    R  E  GE   L  +E  +L +L  + G+  ++ Q+   ++G
Sbjct: 120 EEQQEELQFGSIRINEKSRKIETNGETISLTVKEFDLLHFLCEHNGQVFSREQLLEKVWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D A     V++H+  +R KL      + + +   +GY  + 
Sbjct: 180 -YDYAGSTRTVDTHVKTMRLKLGESG--NYIQTVWGVGYKFEV 219


>gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 240

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A     G  +           + +S R D+  ++  +   G    
Sbjct: 14  LLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMAASFRPDLLVLDVMMP--GLDGF 71

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   +  P++ ++   + +  +     G DD V KP    E+LAR+ A+ RR  
Sbjct: 72  GVVRRLRESGRHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVLRRST 131

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  + R     I +  +  +    GEV  L   E ++L YLMAN G+ ++K QI  
Sbjct: 132 GPQRPAESPRLSFADIELDEESHEVVKAGEVVSLSPTEFKLLRYLMANAGRVLSKAQILD 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES+IS LR+K+ +      + + R +GY++
Sbjct: 192 HVWN-YDFNGDANVVESYISYLRRKV-DTTEPRLLHTIRGVGYTL 234


>gi|197335063|ref|YP_002156819.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           fischeri MJ11]
 gi|197316553|gb|ACH66000.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           fischeri MJ11]
          Length = 230

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 96/222 (43%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +    L      D+  ++  L G  G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      ++P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRVS 124

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   +++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTSIEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L  +     V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAEGHDRLVQTVRGAGYRF 225


>gi|333008591|gb|EGK28059.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri VA-6]
          Length = 229

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L+  G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLL--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
 gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
          Length = 227

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++G +++     E  E+L      D+  ++  L  K    L
Sbjct: 3   ILVVEDEERVAHFIQKGLKEEGHAVDISYDGEDGEFLAEVNDYDLIILDLMLPKK--NGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA     P++ ++   S++  +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 61  VVCRELRASGVSTPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALLRRKS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   +   + +    R    QG    L  +E  +LEYLM N GK +++T I   ++ 
Sbjct: 121 ESKSPVLKVADLELDPISRRVSRQGSSIRLTTKEYALLEYLMRNPGKVLSRTLIGEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +   E NV++ +IS LR K+        + + R  GY +
Sbjct: 181 M-NFDPESNVIDVYISHLRSKIDKGFDVSLLHTLRGQGYLL 220


>gi|222528319|ref|YP_002572201.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455166|gb|ACM59428.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 225

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D+  + +       + G S++     +       +A  D+  ++  L       +
Sbjct: 3   ILVIEDQKSLANTIARRLQEVGYSVDMALDGQEGLNFIQTASYDLIILDIMLP--KIDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L +++R    Q P++ ++   S++  +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 61  TLLKLVRNKGVQTPVLCLTAKDSIEDRVTGLDAGADDYLVKPFSFDELLARVRALLRRYS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ +   +   + + ++ R     G+V  L  +E  +LEYL  N+G+ + ++QI   ++ 
Sbjct: 121 QIKDPIIQIKDLVIDTNSRKVTRAGKVIDLTSKEYSVLEYLARNKGRVLTRSQIAEHVWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N+V+ +I  LR+K+ +      + + R +GY +
Sbjct: 181 -YDFEGTSNIVDVYIRYLRRKIDDGFPEKLIHTIRGVGYML 220


>gi|157146995|ref|YP_001454314.1| transcriptional regulator PhoB [Citrobacter koseri ATCC BAA-895]
 gi|157084200|gb|ABV13878.1| hypothetical protein CKO_02772 [Citrobacter koseri ATCC BAA-895]
          Length = 229

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   ++G DD V KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYVTKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|300857676|ref|YP_003782659.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685130|gb|ADK28052.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205415|gb|ADL09757.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302329969|gb|ADL20163.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275653|gb|ADO25552.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 231

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 102/230 (44%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D    L   +G  +    + +    L    + D+  +   L+  G    
Sbjct: 4   ILLVEDEESLADPLAFLLRKEGFEV--VVAGDGPTALVEFEKNDIDIVLLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  DVCKRLRKVSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGE 121

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +  ++    G +R+  +     V GE   +P +E  +LEYLM N G+ + + Q
Sbjct: 122 PQVADYEEEGDDILGGGRVRMDVERHTVTVAGENISMPLKEFDLLEYLMRNSGRVLTRGQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 LIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSSPKHLVTVRGLGYKFE 230


>gi|302879699|ref|YP_003848263.1| two component transcriptional regulator PhoB, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302582488|gb|ADL56499.1| two component transcriptional regulator PhoB, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 229

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  +      G      +  E           D+  ++  L       +
Sbjct: 5   ILIVEDEPAIQELLVFNVTQAGFVALRASDAEEAWQQIRDYAPDLILLDWMLPST--SGV 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R+      VP+I ++     +  +   +SG DD + KP   RE++AR+ A+ RR
Sbjct: 63  VLAKQLRSEARTKDVPIIMLTARGDERDKVLGLESGADDYITKPFSPRELMARIRAVMRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +S ++  +G + +         +G    L   E R+L + M +  +  ++TQ+   
Sbjct: 123 HIPTLSEDKVASGGLELSPTSHRVTAKGLTIELGPTEFRLLHFFMTHAERVYSRTQLLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G     VEE  V+ HI +LR  L        + + R  GY    N
Sbjct: 183 VWGT-QVFVEERTVDVHIRRLRASLEASGLDGLIQTVRGSGYRFSTN 228


>gi|194445785|ref|YP_002039637.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194404448|gb|ACF64670.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 229

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 100/229 (43%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G     F  +E E++  +  +      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNG-----FQPVEAEDYDSAVNKLNEPWPDLILLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L+  + ++  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ 
Sbjct: 58  GGSGLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +               +   E ++L + MA+  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMAHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 178 QLLNHVWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|167461324|ref|ZP_02326413.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381342|ref|ZP_08055345.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154918|gb|EFX47189.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 282

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           L  S + D+  ++  L  K    +
Sbjct: 48  ILVVDDEQPIADILKFNLEKEGYEVICAYDGGTAVELAFSEKPDLILLDLMLPVK--DGM 105

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R +R     P+I ++   +    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 106 DVCREVRGKLNTPIIMLTAKDTEIDKVLGLEMGADDYVTKPFGTRELLARVKAHLRRQIK 165

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   K          + + +D       G+   L  RE  ++ YL  +  K + + 
Sbjct: 166 SEAAPEVAKEEPQGIRLDTLFIDTDMYVVYKDGDPLDLTHREFELIYYLAKHPSKVMTRE 225

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  A++G ++   +   V+  I +LR+K+  +    + + ++R LGY +
Sbjct: 226 HLLQAVWG-YEYFGDVRTVDVTIRRLREKIETDPSKPEYIVTRRGLGYMM 274


>gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 231

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G  +              +   DV  ++  L       L
Sbjct: 6   ILIVDDEARLRELVRRYLEQAGFRVVQAADGVTALEQARAWTPDVVILDIMLPV--LDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S   ++ ++        +   ++G DD + KP   RE++ARV A+ RR + 
Sbjct: 64  AVCRRLRTFSDAYILMLTARAEESDRVTGLETGADDYLTKPFAPRELVARVRALLRRPRH 123

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     ++    G + +        + G++  L   E  +L  + A  G+  ++TQ+   
Sbjct: 124 TEVSMPSSLIHYGGLVIDPVAHTVALDGQLLTLTPIEYALLSVMAAAPGRVFSRTQLLDR 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I+G  D   +E+VVE HI+ LRKKL +       + + R +GY  
Sbjct: 184 IWG-HDYFGDEHVVEVHITNLRKKLGDNPNRPQYIFTVRGIGYRF 227


>gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae
           TIGR4]
 gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54]
 gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae]
 gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae]
 gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
 gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54]
 gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141]
 gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368]
 gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 234

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 104/234 (44%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E  ++  + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR +
Sbjct: 61  LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120

Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 121 PMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|172057053|ref|YP_001813513.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989574|gb|ACB60496.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 238

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 94/233 (40%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ E    +      DV  ++  +       +
Sbjct: 7   ILVVDDEERIRRLLKMYLERENFTIEEADNGETALEMALETEYDVILLDLMMP--KLDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R     P++ ++        +  F+ G DD + KP   RE++ RV AI RR   
Sbjct: 65  QVCEELRKTKATPIVMLTAKGEETNRVHGFEMGADDYIVKPFSPREVVLRVKAILRRASA 124

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D     V+ +   L  +E  +L +L     K  ++ Q
Sbjct: 125 TKFLHTDAKTKDVIVFPHLTIDNDAHRVTVESQEVNLTPKEYELLYFLAKQTDKVFSREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDWN 223
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + N
Sbjct: 185 LLKEVWN-YEFFGDLRTVDTHVKRLREKLNRLSPNAAQMITTVWGVGYKFENN 236


>gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 231

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  +V  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQMISTYEVDLMILDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri]
 gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
          Length = 235

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       +   D+  ++  L       L
Sbjct: 5   ILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLP--KIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +RA   +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229


>gi|22124885|ref|NP_668308.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis KIM 10]
 gi|45440577|ref|NP_992116.1| phosphate regulon transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|165926563|ref|ZP_02222395.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|166011007|ref|ZP_02231905.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212953|ref|ZP_02238988.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167399213|ref|ZP_02304737.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421696|ref|ZP_02313449.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423518|ref|ZP_02315271.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|270489463|ref|ZP_06206537.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis KIM D27]
 gi|294504931|ref|YP_003568993.1| positive response regulator for pho regulon [Yersinia pestis
           Z176003]
 gi|21957719|gb|AAM84559.1|AE013701_4 positive response regulator for pho regulon [Yersinia pestis KIM
           10]
 gi|45435434|gb|AAS60993.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|165921491|gb|EDR38688.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990007|gb|EDR42308.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166205740|gb|EDR50220.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960615|gb|EDR56636.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051717|gb|EDR63125.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057688|gb|EDR67434.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|262362995|gb|ACY59716.1| positive response regulator for pho regulon [Yersinia pestis
           D106004]
 gi|262366919|gb|ACY63476.1| positive response regulator for pho regulon [Yersinia pestis
           D182038]
 gi|270337967|gb|EFA48744.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis KIM D27]
 gi|294355390|gb|ADE65731.1| positive response regulator for pho regulon [Yersinia pestis
           Z176003]
          Length = 239

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 98/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G        LE E++  + AR      D+  ++  L   
Sbjct: 15  ILVVEDEAPIREMVCFVLEQNGY-----QPLEAEDYDSAVARLSEPFPDLVLLDWMLP-- 67

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 68  GGSGIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIK 127

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +           +   +   E ++L + M +  +  ++ 
Sbjct: 128 AVMRRISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSRE 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 188 QLLNYVWGT-NVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 235


>gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
 gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
          Length = 231

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ     +V  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQKLYTYEVDLMILDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  ++           + +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIE 230


>gi|218549942|ref|YP_002383733.1| transcriptional regulator PhoB [Escherichia fergusonii ATCC 35469]
 gi|218357483|emb|CAQ90122.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia fergusonii ATCC 35469]
 gi|324114618|gb|EGC08586.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia fergusonii B253]
 gi|325498318|gb|EGC96177.1| transcriptional regulator PhoB [Escherichia fergusonii ECD227]
          Length = 229

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGETPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPSGHDRMVQTVRGTGYRF 225


>gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
 gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
          Length = 231

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  ++  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQMISTYEIDLMILDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|145294521|ref|YP_001137342.1| hypothetical protein cgR_0476 [Corynebacterium glutamicum R]
 gi|140844441|dbj|BAF53440.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 232

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 106/231 (45%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G   +   + +    L   +R ++  +   L+  G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGF--DTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR  V
Sbjct: 62  DVCKELRSVSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGV 121

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +   AE           G +R+  D     V GE   +P +E  +LEYL+ N G+ + + 
Sbjct: 122 TETEAEELPLDDQILEGGRVRMDVDSHTVTVDGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231


>gi|289643472|ref|ZP_06475591.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506724|gb|EFD27704.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 290

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +       + G  ++          +  +   D+  ++  L   G   +E
Sbjct: 56  LVVDDDPTVAEVVDRYLRNAGFDVDRAADGLTALRMAETTVPDLVVLDLMLP--GIDGIE 113

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R    VP+I ++        +   ++G DD V KP   RE+  RV ++ RR    
Sbjct: 114 VCRRLREQRPVPVIMLTARGEEADRVAGLETGADDYVTKPFSPRELTLRVRSVLRRAAEP 173

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G + V +  R     G    L  RE  +L +L+ + G+   ++++   ++G
Sbjct: 174 PRASGALHAGMLVVDAAARTVTRHGVALSLTVREFDLLAFLLRHPGRAFTRSELLEQVWG 233

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
                 + + V  HI +LR+K+ +       + +   +GY  D
Sbjct: 234 W--SYGDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYD 274


>gi|325663166|ref|ZP_08151616.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470620|gb|EGC73850.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 241

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +       +  E       S   ++  ++  L   G    
Sbjct: 7   ILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDSYSPNLVLLDLMLP--GIDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S  P+I +S    +   +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  QVCREIRAKSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             I +          G+V  +P +E  +L +L ++  +   + Q
Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   I+G ++   +   V+ HI +LR+K  N+   D  +S+  +GY +
Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREK--NQGPSDM-ESRHRVGYRV 228


>gi|205375565|ref|ZP_03228353.1| YycF [Bacillus coahuilensis m4-4]
          Length = 236

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++      E    +    + D+  ++  L  +    +
Sbjct: 5   ILVVDDEKPIADILQFNLKKEGYTVYCAYDGEEAIKMAEEVQPDMILLDIMLPKR--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR + 
Sbjct: 63  EVCRELRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRHQN 122

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      N    G + +  D      + E   L  RE  +L YL  + G+ + +  
Sbjct: 123 VQIPLEDDQKGNEIVIGSLVIHPDAYVVSKREETIELTHREFELLHYLGKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYL 230


>gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 231

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +++        +G   + F + + E+ L+    E V  +   ++   E   E
Sbjct: 7   LIIDDDPHIREILDDYLNFEGF--DAFLAEDTEKGLKILQEEKVDILILDIMLPDEDGWE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + IR    +P+I +S        +   + G DD + KP   RE++AR+ A+ RR   +
Sbjct: 65  FCQKIRPEYDLPIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLRRYNKA 124

Query: 123 NN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + +  +      QGE   L  +E  +L +L  N  K   + ++  A++G
Sbjct: 125 AENAKIIKYGELIINREQHLVSFQGEKIELTPKEFSLLWHLAENPKKVFRRERLLKAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI  LRKKL +K   + V++   +GY  D
Sbjct: 185 -YDYYGDVRTVDTHIKSLRKKLGDK-AAEAVETVWGVGYKFD 224


>gi|321311784|ref|YP_004204071.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|320018058|gb|ADV93044.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 240

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +  +++  ++ +        A  D+  ++  +   G   +
Sbjct: 9   ILVVDDEARIRRLLRMYLERENYAIDEADNGDEAITKGLEANYDLILLDLMMP--GTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 67  EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++         N      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237


>gi|258511695|ref|YP_003185129.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478421|gb|ACV58740.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 233

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  ++   + + +E L  +  +  + I   L+  G    
Sbjct: 6   ILVVDDEERIRRLVRMYLERNGFEVD--EAADGKEALHKALNQAYALIILDLMLPGMDGR 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++   IR HS VP++ ++        +  F+ G DD V KP   RE++ RV A+ +R   
Sbjct: 64  DVCAQIRQHSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGE 123

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +        + +  D R  EV G+   L  +E  +L Y+     K  ++ ++  
Sbjct: 124 MEYARNAIQTLTFPGLEIQIDARRVEVNGQEVNLTPKEFDLLVYMAQRPDKVFSREELLR 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSIDW 222
            ++  +    ++  V++HI +LR+KL          + +   +GY  + 
Sbjct: 184 DVWN-YQFFGDQRTVDTHIKRLREKLGQASPEVSRYIVTVWGVGYKFEV 231


>gi|83589678|ref|YP_429687.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83572592|gb|ABC19144.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 256

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD A ++         +G+ +    +    + L+   ++    +   L+        
Sbjct: 36  LVADDEAGLRQLVRLYLEKEGMIVG--EAATGRQTLERLHQDKYDLLILDLMMPDGDGWT 93

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R    +P+I ++        L  F+ G DD V KP   RE++ARV A+ RR    
Sbjct: 94  VCREVRREMDLPIIMLTARGEEMDRLLGFELGADDYVTKPFSPRELVARVKALLRRARNE 153

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    R +   + +    R+ +V G     L  +E  +L +L  + G+ +++ +I   ++
Sbjct: 154 RARGERLQFPGLVIDIPAREVKVDGRTIGNLTPKEFDLLLFLARHPGQVMSREKILEKVW 213

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   +   V++HI  LR+KL  +     + +   +GY  + 
Sbjct: 214 G-YDFYGDLRTVDTHIKNLREKLGREHA--WIATVWGVGYKFEV 254


>gi|332974487|gb|EGK11409.1| response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 19/229 (8%)

Query: 2   FVLIDDRA----LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            + +DD      L+++G+     +    +    + E    +  S   D   ++  L   G
Sbjct: 15  ILAVDDDRDIVHLIREGFRY---ESSFEVIPAYTGEEALKIVDSRSVDFVILDIMLP--G 69

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +E  R IR    VP++ +S        +   + G DD + KP   RE+LARV A +R
Sbjct: 70  LDGMETCRRIRQQHTVPILLLSARDRELDKVIGLEIGADDYLTKPFSPRELLARVKAHFR 129

Query: 118 RLKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R++           +GP+ +     +  + GE   L  +E +IL +L  +  + +++ Q+
Sbjct: 130 RVERMKREMGPYTRSGPLSINEQTYEVFMDGEKVDLSAKEFQILSFLAKHPNQVLSREQL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +  I+G   E  + N V  HI  +RKKL    G D + +   +GY   W
Sbjct: 190 YQKIWGQ--EFGDLNTVTVHIKNIRKKL----GRDCIKTIWGVGYKFAW 232


>gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 223

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D   A+   +G  +E     E    L SS   D+  ++  L   G   L
Sbjct: 3   LLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQSFDLVILDWMLP--GHSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +RA  + VP++ ++   ++ + L  F++G DD + KP   RE+LARV A+ RR  
Sbjct: 61  DLCRRLRAGGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  ++    G + +    +     G    L  +E ++LEY M + G+ +   QI   ++ 
Sbjct: 121 ERQSDELRLGDLVLDVSNKLVRRAGRPIDLSAKEYQLLEYFMRHPGQLLTHEQILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E    NVV + +  LR+K+    G   + +    GY  
Sbjct: 181 SGAE-PNSNVVAAQVKLLRRKIDKDAGTALIHTVYGQGYRF 220


>gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +  +   + +E L+         I   ++  G   +
Sbjct: 6   ILIIEDEKQIARFIELELKHEGYDV--YVCYDGKEGLKKVEEIHPDLILLDIMLPGINGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR HS VPLI ++    +   +   DSG DD V KP    E+LAR+ A  R+ K 
Sbjct: 64  EICRKIRQHSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N          + + +  R  +   ++  L +RE  +LEYL+ N+G  + + QI   ++
Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTREQILENVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +    + NVV+ +I  LR K+ +      + + R +GY  +
Sbjct: 184 G-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCE 225


>gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
 gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
          Length = 228

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D + V +  +     +   +      E    +      D+  ++  L       +E
Sbjct: 6   LVAEDESAVSELLLYNLKREDYDVAIAADGEEALMMIDERIPDLLLLDWMLPKV--SGIE 63

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +RA   +  +P+I ++        +   D+G DD V KP    E++ARV A+ RR+
Sbjct: 64  ICRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVLRRI 123

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     +R   G I +           E   L   E R+L+Y M + G+  ++ Q+   +
Sbjct: 124 RPGLKEDRITVGDIEIDRVAHRVSRNNEDIHLGPTEFRLLDYFMQHPGRVFSREQLLDTV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  VE   V+ H+ +LRK LR   G DP+ + R  GY++
Sbjct: 184 WG-SDVYVEARTVDVHVGRLRKALRQSGGEDPIRTVRSAGYAL 225


>gi|318604580|emb|CBY26078.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 279

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 55  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLP--GGSGI 112

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 113 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 172

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 173 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 232

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 233 VWGT-NVYVEDRTVDVHIRRLRKALEIDGHDRMVQTVRGTGYRF 275


>gi|242372585|ref|ZP_04818159.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349802|gb|EES41403.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 280

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 53  VVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLP--GRDGME 110

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 111 VCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 170

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +  + N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 171 PAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 230

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 231 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 276


>gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 229

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 101/227 (44%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +      E         + D+  ++  L       +
Sbjct: 5   ILVMEDEDALATLLQYNLEKEGYDVVVAADGEEGLVQIDERQPDLVLLDWMLPKV--SGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R       +P+I ++        +   D+G DD + KP    E++AR+ A+ RR
Sbjct: 63  EVCRRLRGRPETRNLPVIMLTARGEESDRVRGLDTGADDYLTKPFSMTELIARIRAVLRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++   +++R   G I +          G+   L   E R+L++ M + G+  ++ Q+  A
Sbjct: 123 IRPGLADDRVGHGDIVIDRVAHRVRRSGKEVHLGPTEFRLLDHFMRHPGRVFSREQLLDA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G  D  VE   V+ H+ +LRK L  +   +P+ + R  GYS+D +
Sbjct: 183 VWG-SDVYVEARTVDVHVGRLRKALNVEESANPIRTVRSAGYSLDLD 228


>gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
           YIT 12067]
          Length = 234

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 93/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++     F  +G  +              S + D+  ++  +       +
Sbjct: 8   ILIADDEAQIREILRIYFEKEGFEVIEAEDGAAAILKVQSEKPDILLLDIMMPV--LDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S +P+I ++        +   + G DD + KP + RE++ARV A+ RR   
Sbjct: 66  EVCKQVRKMSDLPIIMVTAKDDDDDRIAGLEIGADDYITKPFNSREVVARVKAVLRRAGT 125

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +R     + +  D       G       +E  +L  L +N GK  ++ Q+   
Sbjct: 126 QEKKGEVSRITYPGLIIDMDQYQVTAFGNKMTFTTKEMELLWCLASNPGKAFSRNQLLET 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           I+G +    +   V++HI ++R+KL         + +   +GY  +
Sbjct: 186 IWG-YSYYGDTRTVDTHIKRIRQKLNIPPDSKWDITTIWGVGYKFE 230


>gi|225853570|ref|YP_002733803.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis ATCC 23457]
 gi|254718183|ref|ZP_05179994.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. 83/13]
 gi|256262946|ref|ZP_05465478.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|265983140|ref|ZP_06095875.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306837697|ref|ZP_07470566.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NF 2653]
 gi|225641935|gb|ACO01849.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis ATCC 23457]
 gi|263092820|gb|EEZ16995.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661732|gb|EEZ31993.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306407255|gb|EFM63465.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NF 2653]
 gi|326410142|gb|ADZ67207.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis M28]
 gi|326539862|gb|ADZ88077.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis M5-90]
          Length = 228

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLP--GVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +     G DD V KP    E+LARV A+ RR
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S  ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      DP+ + R  GYS 
Sbjct: 185 VWGP-DIYVDDRTVDVHVGRLRKAINVGRAADPIRTVRGAGYSF 227


>gi|84393908|ref|ZP_00992650.1| Response regulator [Vibrio splendidus 12B01]
 gi|86145558|ref|ZP_01063888.1| Response regulator [Vibrio sp. MED222]
 gi|218708602|ref|YP_002416223.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32]
 gi|84375458|gb|EAP92363.1| Response regulator [Vibrio splendidus 12B01]
 gi|85836529|gb|EAQ54655.1| Response regulator [Vibrio sp. MED222]
 gi|218321621|emb|CAV17573.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32]
          Length = 229

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +           D+  ++  L G  G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++               +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTASEGPVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALESAGHDKLIQTVRGAGYRF 225


>gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 95/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++   + E    +      D+  ++  +   G   +
Sbjct: 7   ILVVDDEERIRRLLKMYLEREDYDVDDAENGEKALKMALENEYDLIVLDLMMP--GIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   IR H   P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCEEIRKHKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSS 124

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G+   L  +E  +L YL  +  K  A+ Q
Sbjct: 125 TKFLQTETTTKDVLVFPHLTIDNDAHRITADGKHINLTPKEYELLHYLAQSPDKVFAREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++HI +LR+KL   +    + + +   +GY  +
Sbjct: 185 LLKDVWN-YEFFGDLRTVDTHIKRLREKLNKVSPEAANMISTVWGVGYKFE 234


>gi|228475679|ref|ZP_04060397.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|228270461|gb|EEK11896.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
          Length = 233

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 6   VVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLP--GRDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 64  VCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYAQ 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + + N      I ++ +    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 124 PAQESEGTTNEIAIKDIVIYPEAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229


>gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 229

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 102/226 (45%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   +    +G ++  + +   +E ++   +E +  +   ++       
Sbjct: 7   ILIVDDELDLRELVTSYLRKEGFAV--YTAETGDEAIKRLEQEPMDLVVLDVMMDEMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + IRA SQ+P+I ++        +     G DD + KP   RE++AR+    RR + 
Sbjct: 65  TACKEIRAFSQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVALRRTQG 124

Query: 122 SNNRAETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +TG     +R+   GR   V G+   L ++E  +L +L+ +RG+   +  +   +
Sbjct: 125 IQQVDDTGYRFNELRIQPSGRKVFVNGQEISLTKKEYDLLVFLLEHRGRVFTREHLHDRL 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G+  +      V++HI  LR KL  K     + +   +GY  + +
Sbjct: 185 WGMDTQQGTLRTVDTHIKTLRLKL--KPADRFIKTVWGVGYKFEVD 228


>gi|302386530|ref|YP_003822352.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197158|gb|ADL04729.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 229

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +I+D   ++D         G  +  F   E       S +  ++  +  L   G   
Sbjct: 3   LIYVIEDDDNIRDLIKIALEGFGYEVSAFEMAEDALRHIESDQPALAVFDLMLP--GMDG 60

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L   R IR +     +P++ ++        +   D G DD + KP    E+ AR+ ++ R
Sbjct: 61  LTAIRRIRKNESLKDIPILILTAKDREFDKVAGLDGGADDYMTKPFGVMELAARIRSLLR 120

Query: 118 RL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R    +  +N      + +    R+    G    L  +E  +L+YLM N  K V + ++ 
Sbjct: 121 RSTRDQAESNELNQYCLNLNKKTREVHCDGMKVELTLKEFELLQYLMENHNKVVTRDELL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + I+G +D   E   ++ HI  LR+KL    G   + + R +GY  
Sbjct: 181 NHIWG-YDYDGETRTLDMHIRTLRQKLGENGGS-CIKTVRGVGYRF 224


>gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 231

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  +V  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQMISTYEVDLMILDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIE 230


>gi|328956405|ref|YP_004373791.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328672729|gb|AEB28775.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 235

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +  F + + EE L+         I   L+   +  L
Sbjct: 4   ILVVDDEKPISDIVKFNLTKEGYEV--FTAYDGEEALEKVEEVLPDLIILDLMLPKKDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R +  +P+I ++   S    +   + G DD V KP  +RE+ ARV A  RR   
Sbjct: 62  EVCREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELTARVKANLRRHDN 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  ++  N  E G + +  D      +G    L  RE  +L YL  + G+ + +  
Sbjct: 122 AKTPVVEEIETNDIEVGALTIHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTWLVTRRGVGYYL 229


>gi|153008102|ref|YP_001369317.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|239833192|ref|ZP_04681521.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ochrobactrum intermedium LMG 3301]
 gi|151559990|gb|ABS13488.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
 gi|239825459|gb|EEQ97027.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ochrobactrum intermedium LMG 3301]
          Length = 228

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E        D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRENVPDLLILDWMLP--GVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +     G DD V KP    E+LARV A+ RR
Sbjct: 65  ELCRRLRQWPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S  ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 SNPSILSHVLKVGDLVLDRQQHRVYRKEKEVRLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      DP+ + R  GYS 
Sbjct: 185 VWGP-DIYVDDRTVDVHVGRLRKAINVGRALDPIRTVRGAGYSF 227


>gi|307941515|ref|ZP_07656870.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseibium sp. TrichSKD4]
 gi|307775123|gb|EFO34329.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseibium sp. TrichSKD4]
          Length = 230

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +E     +  +     +  D+  ++  L   G   +E
Sbjct: 5   LIVEDEEPLSLLLKYNLEAEGYQVEVCARGDEADLRLRESLPDLLLLDWMLP--GLSGIE 62

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R IR   +    P+I ++        +    +G DD V KP    E++ARV AI RR 
Sbjct: 63  LCRRIRGREETALLPVIMLTARGEESERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 122

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +N   +G I +  +        +   L   E R+LE+LM + G+  ++ Q+   +
Sbjct: 123 SPEVVSNLLRSGDIELDRETHRVRRSSKEIHLGPTEFRLLEFLMTSPGRVYSREQLLDGV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  V+E  V+ H+ +LRK L      DP+ + R  GY+ +
Sbjct: 183 WG-HDVYVDERTVDVHVGRLRKALNRGKAKDPIRTVRGAGYAFN 225


>gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271]
 gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271]
          Length = 231

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  +V  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQMISTYEVDLMVLDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|150016605|ref|YP_001308859.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903070|gb|ABR33903.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD  L++          G  ++E  +  +      +    D+  ++  L       
Sbjct: 6   ILVVDDEPLIRKLVTDFLKKQGYVTIEADDGKKAMNLFSNEENIDLIILDVMLPE--YDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R IR  S+VP+I ++        +   D G D+ ++KP     ++ARV A+ RR  
Sbjct: 64  FTVCREIRKKSKVPIIMLTARGEEFDEVFGLDIGADEYISKPFSPNILIARVNAVLRRAN 123

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      +   + +        + GEV  L  +E  +L YL  N GK +++ QI   +
Sbjct: 124 SEDKGKELKDFNGLTIDHSAHQVVIDGEVVDLSPKEYELLIYLSENYGKALSREQILDKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   +   V++HI++LR KL  K   D + + R  GY  +
Sbjct: 184 WG-YDYYGDLRTVDTHINRLRIKLDRK--SDYIQTVRGYGYRFE 224


>gi|266623649|ref|ZP_06116584.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288864541|gb|EFC96839.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 233

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 115/227 (50%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD A ++         D +S++GF+ LE     ++      ++D++ I   ++   
Sbjct: 14  ILVVDDEARMRK-----LVKDFLSVKGFSVLEASNGEEAVDLFFEQKDIALIILDVMMPK 68

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E  R IR +SQVP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI R
Sbjct: 69  MDGWETCRTIRKYSQVPIIMLTARSEERDELQGFNLGVDEYISKPFSPKILVARVEAILR 128

Query: 118 RLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   VS++  E G IR+        + G+   L  +E  +L Y + N+G  +++ +I + 
Sbjct: 129 RSNAVSSDLIEIGGIRIDKAAHQVTIDGQNIDLSYKEFELLTYFVENQGIALSREKILNN 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++  +D   +   +++H+ KLR K+  K   D + +   +GY  + +
Sbjct: 189 VWN-YDYFGDARTIDTHVKKLRSKMGEKG--DYIRTIWGMGYKFEVS 232


>gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555]
 gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G      +       +    R  +  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLP--GMDGY 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + IR     +  P++ I+        +   + G DD + KP   RE+LARV AI RR
Sbjct: 64  DVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRR 123

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K  +     G I +  D  +    GE   L  +E  +L+ L+ N+G+ + +  +   
Sbjct: 124 TAIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           I+G ++   E   V+ HI  +R+K+ +       +++ R +GY  +W
Sbjct: 184 IWG-YEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGYRFNW 229


>gi|331656451|ref|ZP_08357413.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA206]
 gi|315299630|gb|EFU58878.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 16-3]
 gi|331054699|gb|EGI26708.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA206]
          Length = 229

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYIIKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           E   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 240

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       ++G + +     E       +   D+  ++  L       +
Sbjct: 17  ILVVEDETTLANTLARCLREEGYATDIAYDGEEGVAFAETVVYDLIILDLMLPR--LDGM 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +R    + P++ ++   ++   +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 75  EVIRRLRNERIETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRRES 134

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   + G + + +  R          L  +E  +LEYLM N  + + +TQI   ++ 
Sbjct: 135 DNKSTVLQVGDLVMDTVSRQVRRGDREINLTNKEYALLEYLMRNPNRVLTRTQIAEHVWD 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D +   N+V+ +I  LR+K+ +      + + R  GY +
Sbjct: 195 -YDFSGMSNIVDVYIRYLRRKIDDNFEPKLLYTIRGSGYCL 234


>gi|311280718|ref|YP_003942949.1| two component transcriptional regulator PhoB, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749913|gb|ADO49665.1| two component transcriptional regulator PhoB, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 229

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVTQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|205351709|ref|YP_002225510.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271490|emb|CAR36308.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326626742|gb|EGE33085.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 229

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 99/229 (43%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G     F  +E E++  +  +      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNG-----FQPVEAEDYDCAVNKLNEPWPDLILLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L+  + ++  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ 
Sbjct: 58  GGSGLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +               +   E ++L + M +  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 178 QLLNHVWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 406

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +           L    R D   ++  L       LE
Sbjct: 162 LVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLARDFRPDAVVLDIMLPD--MDGLE 219

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA S  VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 220 VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAAR 279

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +      G + +  + R+ +  G+   L   E  +L + M N  + ++K QI   
Sbjct: 280 TTEALQGARLVVGDLTMDEESREVQRAGQPVHLTATEFELLRFFMRNPRRVLSKAQILDR 339

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE ++S LRKK+ +      + + R  GY +
Sbjct: 340 VWN-YDFGGQANVVELYVSYLRKKI-DAGRPPMIHTMRGAGYVL 381


>gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 229

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 99/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +  G       +G  +    + +  E L      D   I   L+  G   L
Sbjct: 4   ILVVDDEPGLVKGLRLSLEQEGFQVT--TASDGREALSKFRAGDFDLIVLDLMLPGVDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA    P+I ++        +   + G DD + KP + RE++AR+ A+ RR + 
Sbjct: 62  TICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++      R   G + +    R  EV G    L  RE  +LE L  + G    + ++   
Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++G +D A +E  V+ H+ ++R+KL         + +K  +GY ++
Sbjct: 182 VWG-YDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLE 226


>gi|218289584|ref|ZP_03493804.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240234|gb|EED07417.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 233

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  ++   + + +E L  +  +  + I   L+  G    
Sbjct: 6   ILVVDDEERIRRLVRMYLERNGFEVD--EAADGKEALNKALNQAYALIILDLMLPGMDGR 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++   IR HS VP++ ++        +  F+ G DD V KP   RE++ RV A+ +R   
Sbjct: 64  DVCAQIRQHSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGE 123

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +        + +  D R  EV G+   L  +E  +L Y+     K  ++ ++  
Sbjct: 124 MEYARNAIQTLTFPGLEIQIDARRVEVNGQEVSLTPKEFDLLVYMAQRPDKVFSREELLR 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSIDW 222
            ++  +    ++  V++HI +LR+KL          + +   +GY  + 
Sbjct: 184 DVWN-YQFFGDQRTVDTHIKRLREKLGQASPEVSRYIVTVWGVGYKFEV 231


>gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 230

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A +          +G ++E  +  E    L+ + +  +  +   ++  G    
Sbjct: 3   ILLVDDDAELASLLSEFLRREGFTVEAAH--EGNRGLEKALQPGIDLVVLDVMLPGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R  S+VP++ ++        +   + G DD + KP + RE+ AR+ AI RR + 
Sbjct: 61  EILKRLRQRSKVPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRRYER 120

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + +R ET  I +    R+    G+   L   E  ILE LM + G+ +++  +    
Sbjct: 121 DTPATGHRIETNGIVLDPGTREVTAGGKKIELTTFEFDILEMLMRSAGRVLSRDALMENF 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y       +   ++ HIS LRKKL N  G D + + R +GY  
Sbjct: 181 YNRKATPFD-RSIDMHISHLRKKLEN--GDDLIKTIRGVGYQF 220


>gi|314935217|ref|ZP_07842570.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656552|gb|EFS20291.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
          Length = 233

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 6   VVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLP--GRDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 64  VCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYAQ 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + + N      I V+ D    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 124 PAQESEGTTNEIAIKDIVVYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229


>gi|56963600|ref|YP_175331.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909843|dbj|BAD64370.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 238

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 96/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +E  ++ E    L  +   D+  ++  +   G   +
Sbjct: 7   LLVVDDEERIRRLLRMYLEREEYQIEEASNGEEALELALAKEYDLILLDVMMP--GMDGV 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R     P++ ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EMCQELRKKKATPVMMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKALLRRASA 124

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +    GP+ + +D     V      L  +E  +L YL  +  K  ++ Q
Sbjct: 125 TKFLQTDTQTKDVLVFGPLTIDNDAHRVTVDKTEISLTPKEYELLFYLAQSPDKVFSREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  +
Sbjct: 185 LLKDVWN-YEFFGDLRTVDTHVKRLREKLNRVSPEVAAIISTVWGVGYKFE 234


>gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 246

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +   ++        +    D+  ++  L        E
Sbjct: 9   LVVDDEQNITDLVATALRYEGFQVATAHTGVQALQTAAKTHPDLVILDVMLPD--IDGFE 66

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R + R     P++ ++   + +  +     G DD V KP    E++ARV AI RR + 
Sbjct: 67  VARRLGREGVPTPVLFLTARDATEDKVRGLTVGGDDYVTKPFSLAELVARVHAILRRTRG 126

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N+R     + +  D  +    G +  L   E R+L YL+AN  K + + Q+   ++  
Sbjct: 127 TTNSRLVFADLELDDDTHEVTRGGRLIELTATEYRLLRYLLANARKVLTRAQLLDHVWD- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   +  V+E++IS LRKK+ +  G   + + R +GY++
Sbjct: 186 YDFGGDSGVLETYISYLRKKI-DAEGPPLIHTVRGVGYTL 224


>gi|317492787|ref|ZP_07951211.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918909|gb|EFV40244.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 229

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNSLSEPYPDLVLLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +   ++P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEVQGLSLDPTSHRVMANEAPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALELSGHDKMVQTVRGTGYRF 225


>gi|86747907|ref|YP_484403.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570935|gb|ABD05492.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 233

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA +     P+I ++        +    +G DD + KP    E+LARV  + RR
Sbjct: 63  ELCRRLRARTDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +  D R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|297203135|ref|ZP_06920532.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297148314|gb|EFH28936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 240

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 88/222 (39%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G  ++            ++ R D+  ++  L   G   LE
Sbjct: 14  LVVDDDPTVAEVVSGYLDRAGYLVDRAADGPEALARAAAHRPDLVVLDLMLP--GMDGLE 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    VP+I ++        +   + G DD V KP   RE++ RV ++ RR + +
Sbjct: 72  VCRRMRGRGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRPA 131

Query: 123 NNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +    R     G    L  RE  +L + + + G+   +  +   ++G 
Sbjct: 132 EQSGALRAAGLSLDPQARRAVKNGTELALTIREFDLLAFFLRHPGRVFGREDLMREVWGW 191

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             +  + + V  HI +LR K+ +       + +   +GY  +
Sbjct: 192 --DFGDLSTVTVHIRRLRGKVEDDPARPRLIQTVWGVGYRFE 231


>gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G  +  + + + +E LQ  +  +V  +   ++      L
Sbjct: 16  ILIIDDDKEIVELLAVYLRNEGYKI--YKAYDGDEALQMISTYEVDLMILDIMMPKRNGL 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 74  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 133

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  ++             +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 134 QNATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 194 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIE 241


>gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 225

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +          +G ++   N           +  D+  ++  L   G   +
Sbjct: 6   ILLVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNARESDPDLILLDWMLP--GMSGV 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R   + VP+I ++    +   +   D+G DD + KP +  E+LARV A  RR +
Sbjct: 64  DICKRLRQTGNNVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNQ 123

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  E   + + S+ R       +  L  +E  +LEYLM++  + + + QI   ++G
Sbjct: 124 QDDPDLLEFLDLTLNSNTRQVFRGDRLIELTAKEFDLLEYLMSHPKQVLTRDQILERVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL  +     + + R +GY +
Sbjct: 184 -YDFMGDSNIIEVYVRYLRLKLEAEKEKRIIQTVRGVGYVL 223


>gi|251796377|ref|YP_003011108.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544003|gb|ACT01022.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 93/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  ++     E    L +     +  ++  L   G   +
Sbjct: 8   ILVVDDEERIRRLLKMYLEKEGYLIDEAEDGETALRLATVTDYALILLDVMLP--GIDGV 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R     P+I ++        +  F+ G DD V KP   RE++ RV AI RR   
Sbjct: 66  EVCSRLRQVKATPVIMLTAKGEEMNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S+N      + +  D       G+   L  +E  +L YL  +  K  ++ +
Sbjct: 126 TAFLTKEVNSSNNIVFPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY ++ 
Sbjct: 186 LLKDVWN-YEFFGDLRTVDTHVKRLREKLNKVSPDAASMITTVWGVGYKLEV 236


>gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 231

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  ++  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQMISTYEIELMILDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|148980999|ref|ZP_01816248.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3]
 gi|145961039|gb|EDK26361.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3]
          Length = 229

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +           D+  ++  L G  G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGSGVNF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++               +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTASEGPVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L +      + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALESAGHDKLIQTVRGAGYRF 225


>gi|119963579|ref|YP_946689.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119950438|gb|ABM09349.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 220

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 8/221 (3%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D     D    L G +G  +E  ++    + L    R     +   L   G    E+ R
Sbjct: 2   EDEESFSDPLSYLLGKEGFDVEVVDN--GSDALVEFDRNGADLVLLDLQLPGTPGTEVCR 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN- 124
            +R  S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR       
Sbjct: 60  QLRQRSSVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGEPEEL 119

Query: 125 ---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   ++G  
Sbjct: 120 ITSTVQAGPVRMDIERHVVSVNGVQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRVWG-S 178

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 179 DYVGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGYKFE 219


>gi|162419398|ref|YP_001607632.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Angola]
 gi|162352213|gb|ABX86161.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis Angola]
          Length = 230

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 98/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G        LE E++  + AR      D+  ++  L   
Sbjct: 6   ILVVEDEAPIREMVCFVLEQNGY-----QPLEAEDYDSAVARLSEPFPDLVLLDWMLP-- 58

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 59  GGSGIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIK 118

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +           +   +   E ++L + M +  +  ++ 
Sbjct: 119 AVMRRISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 179 QLLNYVWGT-NVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 226


>gi|271961733|ref|YP_003335929.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504908|gb|ACZ83186.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 231

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +        DG  +E     +  E L+ +  +    +   L+      L
Sbjct: 5   ILVVDDDPTVAEVVARYLERDGHVVEC--VGDGAEALRRALSDPPDLLVLDLMLPKMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R    VP+I ++        +   ++G DD V KP   RE+  RV ++ RR + 
Sbjct: 63  QVCRKLRERWPVPVIMLTALGEEIDRVVGLETGADDYVTKPFSPRELALRVQSVLRRARG 122

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++  A TG +R     V     +  +      L  RE  +L +LM N  +  +++ +   
Sbjct: 123 ASTPAGTGVLRDGTLVVDVGAHEVRLGDGQIMLTAREFDLLAHLMRNPRQAFSRSALLDQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G      + + V  H+ +LR+K+  +      + +   +GY  +
Sbjct: 183 VWGW--SFGDSSTVTVHVRRLREKIEPDPTAPRRIVTVWGVGYRYE 226


>gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 223

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     +    +G  +  F +    E +     E +  +   ++      L
Sbjct: 3   ILVVDDEKDMVGLLNSYLTSNGYYV--FPAGNGREAIDVMKSESIDLVLLDIMMPFMDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP+I ++   +    +     G DD V KP   +E+LAR+ A  RR K 
Sbjct: 61  EAAQEIRTFSDVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRRSKG 120

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 ++       + V   G   +V G    L R+E  +L  LM N+G+  ++ Q+  
Sbjct: 121 YKNGNLTSQMISHEELTVDLKGHMVQVDGITVNLTRKEFLLLALLMQNQGQVFSREQLLD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G F+       V++HI  LR KL+       V +   +GY  +
Sbjct: 181 QIWG-FESEGTARTVDTHIKTLRLKLKAAGS--YVQTVWGVGYKFN 223


>gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 226

 Score =  244 bits (624), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +        G +G ++           L  + R D+  ++  L        
Sbjct: 5   ILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAETGRFDLILLDVMLP--KLNGT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++   S+   +   DSG +D + KP    E+LAR+    R    
Sbjct: 63  EVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAP 122

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S        + + +D R   ++G+   L +RE  +L +L+ N+G  +++  +   ++G
Sbjct: 123 LSSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD A + N V+ +I  LR K+        + + R +GY I
Sbjct: 183 -FDFAGDTNAVDVYIRFLRGKIDEVFNVKFIHTVRGVGYVI 222


>gi|125974818|ref|YP_001038728.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256004925|ref|ZP_05429898.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418728|ref|ZP_06249747.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125715043|gb|ABN53535.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255991105|gb|EEU01214.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407812|gb|EFB38071.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941938|gb|ADU75972.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 232

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G S    N  E    L  S + D+  ++  L        
Sbjct: 5   ILVVDDEKNIVDILKFNLAKEGFSTLEANDGEQAIELALSEKPDLILLDIMLP--KLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + R +R     P+I I+        +   + G DD + KP   RE++ARV A  RR+  
Sbjct: 63  TVCRKLRESISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVAS 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K  +N  + G + +  +  +     EV  L  RE  ++++L    G+  ++  + 
Sbjct: 123 SAETQKKQSNYLKFGDLEIDIEHYEVRRNNEVIELTLREFELVKFLALQPGQIFSRETLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G ++   +   V+  + ++R+K+  +      + +KR +GY  +
Sbjct: 183 EKVWG-YEYYGDVRTVDVTVRRVREKIEKDPSNPCYIMTKRGVGYYFN 229


>gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 236

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +                + D+  ++  L  +    +
Sbjct: 5   ILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVEEIKPDLILLDIMLPQR--DGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR + 
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANMRRHQQ 122

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             ++          E G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 IASKTEEEDESNEIEVGSLIIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 230


>gi|300703822|ref|YP_003745424.1| DNA-binding response regulator in two-component regulatory system
           with phor [Ralstonia solanacearum CFBP2957]
 gi|299071485|emb|CBJ42807.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum CFBP2957]
          Length = 237

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E    L S    D+  ++  L   G+  +
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLP--GKSGV 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              + +RA+    Q+P+I ++     Q  +   D G DD V KP   +E+LAR+ A+ RR
Sbjct: 63  MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAK 170
              +++++      +R+                     L   E R+L +LM +  +  ++
Sbjct: 123 RAPQLTDDVVAINGLRLDPATHRVTALNSESENPIKLDLGPTEFRLLHFLMTHPERVHSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +Q+   ++G     VEE  V+ HI +LR  L      + +++ R  GY +  N
Sbjct: 183 SQLLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234


>gi|210609810|ref|ZP_03288117.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
 gi|210152737|gb|EEA83743.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L  +   D+  ++  L         
Sbjct: 6   LVVDDEKLIVKGIRFSLMQDGMEVDCAYDGEEALELAKNNEYDLLLLDVMLP--KMDGFA 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIRDFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGRK 123

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V +N      +++  + R   +Q     L  +E  +LE L  N  K  ++ ++ + 
Sbjct: 124 EEKTVESNVLVKHDMKIDCESRRVFIQEREINLTAKEFDLLELLAKNPDKVYSREKLLNL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+         V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIEKHPSDPKYVYTKWGVGYYF 227


>gi|209883802|ref|YP_002287659.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
 gi|209871998|gb|ACI91794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
          Length = 234

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALATLLRYNLDAEGYDVETVARGDEADTRLKERVPDLVVLDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA  +    P+I ++        +    +G DD + KP    E+LARV  + RR
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    G I +  + R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 ASPERVASVLIYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGEEQDPIRTVRGAGYALD 226


>gi|219848093|ref|YP_002462526.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542352|gb|ACL24090.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 234

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++   A     G  +    +      +      D+  ++  L   G   +
Sbjct: 5   ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLP--GMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   +R  S V ++ ++        +     G DD + KP   RE++ARV AI RR + 
Sbjct: 63  EITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V ++      + +  D R+    G++  L   E  +L  L  N  + +++  +   ++
Sbjct: 123 KPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D    + VV+ ++S++R+K+    G + + + R +GY  
Sbjct: 183 GA-DFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRF 223


>gi|51595267|ref|YP_069458.1| two-component regulatory system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808689|ref|YP_652605.1| phosphate regulon transcriptional regulator [Yersinia pestis
           Antiqua]
 gi|108811049|ref|YP_646816.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|149364950|ref|ZP_01886985.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|153946834|ref|YP_001402096.1| PhoB family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|165935944|ref|ZP_02224514.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|167468099|ref|ZP_02332803.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis FV-1]
 gi|170025493|ref|YP_001721998.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186894284|ref|YP_001871396.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930234|ref|YP_002348109.1| phosphate regulon transcriptional regulator [Yersinia pestis CO92]
 gi|229838810|ref|ZP_04458969.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896037|ref|ZP_04511207.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Pestoides A]
 gi|229899378|ref|ZP_04514521.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901275|ref|ZP_04516397.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Nepal516]
 gi|51588549|emb|CAH20157.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulates Pi uptake (OmpR family) [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774697|gb|ABG17216.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|108780602|gb|ABG14660.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Antiqua]
 gi|115348845|emb|CAL21800.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CO92]
 gi|149291363|gb|EDM41437.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|152958329|gb|ABS45790.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pseudotuberculosis IP 31758]
 gi|165916089|gb|EDR34696.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|169752027|gb|ACA69545.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186697310|gb|ACC87939.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681204|gb|EEO77298.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Nepal516]
 gi|229687780|gb|EEO79853.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695176|gb|EEO85223.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700960|gb|EEO88989.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Pestoides A]
 gi|320016389|gb|ADV99960.1| osmolarity response regulator [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 229

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 98/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G        LE E++  + AR      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGY-----QPLEAEDYDSAVARLSEPFPDLVLLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 58  GGSGIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +           +   +   E ++L + M +  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 178 QLLNYVWGT-NVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 225


>gi|16759374|ref|NP_454991.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16763777|ref|NP_459392.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142855|ref|NP_806197.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62179008|ref|YP_215425.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161615421|ref|YP_001589386.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167551797|ref|ZP_02345550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167992242|ref|ZP_02573340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168237507|ref|ZP_02662565.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168240215|ref|ZP_02665147.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168261175|ref|ZP_02683148.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168465482|ref|ZP_02699364.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168818997|ref|ZP_02830997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194450960|ref|YP_002044430.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194736716|ref|YP_002113428.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197264166|ref|ZP_03164240.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198244456|ref|YP_002214351.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390991|ref|ZP_03217602.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|207855879|ref|YP_002242530.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213051513|ref|ZP_03344391.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417376|ref|ZP_03350518.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213582091|ref|ZP_03363917.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213620466|ref|ZP_03373292.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647670|ref|ZP_03377723.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213855581|ref|ZP_03383821.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224582234|ref|YP_002636032.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|289828482|ref|ZP_06546340.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25300971|pir||AD0551 phosphate regulon transcription regulatory protein PhoB STY0432
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16418901|gb|AAL19351.1| response regulator in two-component regulatory system with PhoR (or
           CreC) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16501665|emb|CAD08852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138487|gb|AAO70057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|62126641|gb|AAX64344.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulates pho regulon (OmpR family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364785|gb|ABX68553.1| hypothetical protein SPAB_03192 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409264|gb|ACF69483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194712218|gb|ACF91439.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195631850|gb|EDX50370.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197242421|gb|EDY25041.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197289486|gb|EDY28849.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197938972|gb|ACH76305.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603436|gb|EDZ01982.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205323482|gb|EDZ11321.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205329543|gb|EDZ16307.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205340400|gb|EDZ27164.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205344060|gb|EDZ30824.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205349830|gb|EDZ36461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|206707682|emb|CAR31966.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|224466761|gb|ACN44591.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261245680|emb|CBG23476.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267992105|gb|ACY86990.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157009|emb|CBW16492.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312911430|dbj|BAJ35404.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084671|emb|CBY94462.1| Phosphate regulon transcriptional regulatory protein phoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321225121|gb|EFX50182.1| Phosphate regulon transcriptional regulatory protein PhoB SphR
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322614680|gb|EFY11609.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618786|gb|EFY15674.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623493|gb|EFY20332.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629209|gb|EFY25988.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631929|gb|EFY28683.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637333|gb|EFY34035.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642019|gb|EFY38629.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646219|gb|EFY42733.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322652515|gb|EFY48869.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653322|gb|EFY49655.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660529|gb|EFY56765.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664681|gb|EFY60874.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669266|gb|EFY65416.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670812|gb|EFY66945.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678950|gb|EFY75005.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681978|gb|EFY78003.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685193|gb|EFY81190.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322713467|gb|EFZ05038.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323128714|gb|ADX16144.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194459|gb|EFZ79654.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197005|gb|EFZ82147.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203989|gb|EFZ89006.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206925|gb|EFZ91878.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211059|gb|EFZ95915.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214547|gb|EFZ99298.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223104|gb|EGA07447.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227053|gb|EGA11234.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230129|gb|EGA14249.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233867|gb|EGA17956.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238439|gb|EGA22497.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244127|gb|EGA28136.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246287|gb|EGA30270.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251913|gb|EGA35776.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257910|gb|EGA41589.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261077|gb|EGA44669.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264993|gb|EGA48492.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272556|gb|EGA55963.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326622099|gb|EGE28444.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332987345|gb|AEF06328.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 229

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 99/229 (43%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G     F  +E E++  +  +      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNG-----FQPVEAEDYDSAVNKLNEPWPDLILLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L+  + ++  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ 
Sbjct: 58  GGSGLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +               +   E ++L + M +  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 178 QLLNHVWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|121996908|ref|YP_001001695.1| two component transcriptional regulator [Halorhodospira halophila
           SL1]
 gi|121588313|gb|ABM60893.1| two component transcriptional regulator, winged helix family
           [Halorhodospira halophila SL1]
          Length = 229

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   V++  I      G  +    ++++  E L+     D+  ++  L       
Sbjct: 5   ILVVEDDPAVREMLITSLERQGFEVIPAVDAMQGSEQLR-QRPPDLILLDWMLPQV--SG 61

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E  R ++      Q+P+I ++     +  +  FDSGVDD V KP   RE+ ARV A+ R
Sbjct: 62  VEWARELKEDDQTRQIPIILLTARGEEEDKVRGFDSGVDDYVTKPFSPRELAARVKAVLR 121

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   S  +   E   +R+          G+   L   E R+L + MA+  +   +TQ+  
Sbjct: 122 RTAPSTADTPLEAAGLRLDPVSHRVTGHGQSLELGPTEYRLLRFFMAHPDRVFTRTQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  +  VEE  V+ HI +LRK L        V + R  GY  
Sbjct: 182 QVWGT-NVYVEERTVDVHIRRLRKILATTGHDGLVQTVRGAGYRF 225


>gi|256370539|ref|YP_003108050.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           microti CCM 4915]
 gi|256000702|gb|ACU49101.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           microti CCM 4915]
          Length = 228

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEGEGYQVDTMLRGDEAEIALRESVPDLLILDWMLP--GVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +     G DD V KP    E+LARV A+ RR
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S  ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      DP+ + R  GYS 
Sbjct: 185 VWGP-DIYVDDRTVDVHVGRLRKAINVGRAADPIRTVRGAGYSF 227


>gi|260596767|ref|YP_003209338.1| transcriptional regulator PhoB [Cronobacter turicensis z3032]
 gi|260215944|emb|CBA28550.1| Phosphate regulon transcriptional regulatory protein phoB
           [Cronobacter turicensis z3032]
          Length = 229

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + I+  +   ++P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     +   E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVDEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|153952685|ref|YP_001393450.1| VanR [Clostridium kluyveri DSM 555]
 gi|146345566|gb|EDK32102.1| VanR [Clostridium kluyveri DSM 555]
          Length = 232

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G ++  + S   ++  +    E +      ++       
Sbjct: 5   ILVVDDEQPIADLIEVYLKNEGFTI--YKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR +   P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 63  TLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N+              + +  D  +  +  +   L  +E  IL  L +NRG+ V+  ++
Sbjct: 123 YNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++G        N V  HI  LR+K+  +      + +   +GY I+
Sbjct: 183 FHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231


>gi|146310528|ref|YP_001175602.1| transcriptional regulator PhoB [Enterobacter sp. 638]
 gi|145317404|gb|ABP59551.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 229

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 99/229 (43%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G     F  +E E++  +  +      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNG-----FQPIEAEDYDSAVNQLNEPWPDLILLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L+  + I+  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ 
Sbjct: 58  GGSGLQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +               +   E ++L + M +  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 178 QLLNNVWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|29830959|ref|NP_825593.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608073|dbj|BAC72128.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 249

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 88/221 (39%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G  ++            ++   D+  ++  L   G   LE
Sbjct: 24  LVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPTALARAAAHWPDLVVLDLMLP--GMDGLE 81

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R    VP+I ++        +   + G DD V KP   RE++ RV ++ RR +  
Sbjct: 82  VCRRMRGRGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRTRPV 141

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        + +    R     GE   L  RE  +L + + + G+  ++  +   ++G 
Sbjct: 142 TAPRPLHASGLALDPAARRATKDGEELALTIREFDLLAFFLRHPGRAFSREDLMREVWGW 201

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             +  + + V  H+ +LR K+ +       + +   +GY  
Sbjct: 202 --DFGDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRF 240


>gi|332160707|ref|YP_004297284.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664937|gb|ADZ41581.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862470|emb|CBX72627.1| phosphate regulon transcriptional regulatory protein phoB [Yersinia
           enterocolitica W22703]
          Length = 279

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 55  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLP--GGSGI 112

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 113 QFIKHMKREVLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 172

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 173 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 232

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 233 VWGT-NVYVEDRTVDVHIRRLRKALEIDGHDRMVQTVRGTGYRF 275


>gi|301053513|ref|YP_003791724.1| multidrug resistance ABC transporter ATP-binding protein/permease
           [Bacillus anthracis CI]
 gi|300375682|gb|ADK04586.1| multidrug resistance ABC transporter, ATP-binding and permease
           protein [Bacillus cereus biovar anthracis str. CI]
          Length = 841

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 621 ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 678

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV  + +R ++
Sbjct: 679 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKVLLKRYQI 738

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 739 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 797

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 798 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 840


>gi|238755122|ref|ZP_04616469.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           ruckeri ATCC 29473]
 gi|238706682|gb|EEP99052.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           ruckeri ATCC 29473]
          Length = 234

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 100/229 (43%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G        LE E++  + AR      D+  ++  L   
Sbjct: 10  ILVVEDEAPIREMVCFVLEQNGY-----QPLEAEDYDSAVARLSEPFPDLVLLDWMLP-- 62

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 63  GGSGIQFIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIK 122

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +         + +   +   E ++L + M +  +  ++ 
Sbjct: 123 AVMRRISPMAVEEVIEMQGLSLDPSSHRVMAKEKALDMGPTEFKLLHFFMTHPERVYSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L  +     V + R  GY  
Sbjct: 183 QLLNYVWGT-NVYVEDRTVDVHIRRLRKALEPEGHDKMVQTVRGTGYRF 230


>gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 236

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 105/232 (45%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G   E   + +  E ++    E+   I   L+  G   L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGY--ETVTAFDGREAIEKFEEENPDLIILDLMLPGLDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       SN+    G +++  D    + +GE   L  RE  +L +L  + G+ + 
Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|283797300|ref|ZP_06346453.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291074970|gb|EFE12334.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|295090459|emb|CBK76566.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 234

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +  F +   +E L    RE++  +   ++  G   L
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGYRV--FKAENAKEGLDILDRENIHLVLLDIMMPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  + +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCRKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   + + N      + +  D     V  E   L   E  IL  L +N G+  +  
Sbjct: 124 LNPQSSALQGAKNEISIRGLVINKDNHKVTVYDEEIKLTPIEFDILYLLASNPGRVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +IF  ++         N V  HI +LR K++        + +   +GY I+
Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIE 233


>gi|323487712|ref|ZP_08092970.1| response regulator [Planococcus donghaensis MPA1U2]
 gi|323398446|gb|EGA91234.1| response regulator [Planococcus donghaensis MPA1U2]
          Length = 235

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++      +    + S  + D+  ++  L  +    +
Sbjct: 5   ILVVDDEKPIADILQFNLKKEGFNVVCAYDGDEAIKIASEIQPDLMLLDIMLPNR--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR     P+I ++   S    +   + G DD V KP   RE++ARV A  RR   
Sbjct: 63  EVCREIRKKYDFPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRQNI 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +N  + G + +  D      + E   L  RE  +L YL  + G+ + +  +
Sbjct: 123 APAEEEGQHSNDIQVGVLTIQPDAYLVLKREETIELTHREFELLHYLGKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWIVTRRGVGYYL 229


>gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 233

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++    D+  ++  L       
Sbjct: 4   ILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEA-ENPDILILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV AI RR +
Sbjct: 61  LEVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSE 120

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +         +N    G +++  D    +  GE   L  RE  +L +L ++ G+ + + 
Sbjct: 121 FAVDTQESEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232


>gi|163847988|ref|YP_001636032.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525870|ref|YP_002570341.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669277|gb|ABY35643.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449749|gb|ACM54015.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 231

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 9/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +++         G  +              + R D+  ++  L       
Sbjct: 5   LILIVDDENRLRELIQRYLIQAGFRVAHAGDGLSALAQARTLRPDLIILDLMLPA--LDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R +R  S   ++ ++        +   + G DD + KP   RE++ARV A++RR +
Sbjct: 63  FEVCRQLRTFSDAYILMLTAKVEEPDRVKGLEVGADDYLVKPFSPRELVARVRAMFRRPR 122

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S      +    GP+ + S+     + G    L   E R+L  L A  G+  ++ Q+  
Sbjct: 123 QSGYIDEPSTMTVGPLTIDSESHTVRLDGVPINLTPLEYRLLTILAAAPGRVFSRAQLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            ++G  +   +E+V+E HI+ LRKKL +       + + R +GY  
Sbjct: 183 QVWGN-NYFGDEHVLEVHIANLRKKLGDDPARPRFIFTVRSVGYRF 227


>gi|326203105|ref|ZP_08192971.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986751|gb|EGD47581.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 230

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G       + +  E +   ++     +   ++   +   
Sbjct: 5   ILIADDNEGILDILKTYAEKEGFMP--LLAHDGLEAIDIFSKYHPLLLLLDVMMPKKDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I I+        +   D G DD + KP    E++AR+ AI RR+  
Sbjct: 63  EVCREIRQKSNVPIIMITAKGEDSDRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVDN 122

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           SN       +   + +     + +V G    L ++E  IL  L  N GK  ++  +  ++
Sbjct: 123 SNEDNKKVTQHPGLEINIAEYEVKVNGSPVNLTKKEIEILWLLATNPGKVFSRDNLLDSV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +G ++   +   V++HI +LR K+   +K+ +D + +   +GY  + 
Sbjct: 183 WG-YEYFGDARTVDTHIKRLRAKIDISDKISWD-IKTIWGVGYKFEV 227


>gi|50120049|ref|YP_049216.1| phosphate regulon response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|227113361|ref|ZP_03827017.1| phosphate regulon response regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|227327489|ref|ZP_03831513.1| phosphate regulon response regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
 gi|253687403|ref|YP_003016593.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261822544|ref|YP_003260650.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|49610575|emb|CAG74020.1| phosphate regulon response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|251753981|gb|ACT12057.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261606557|gb|ACX89043.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 229

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    ++  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTQLSEPFPELVLLDWMLP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +         +     +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225


>gi|17228689|ref|NP_485237.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130541|dbj|BAB73151.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 228

 Score =  244 bits (624), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +   +       L   +  D++ ++  L   G   L
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLP--GLSGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA    +P+I ++    +   +   D+G DD V KP    E+LAR+ A  RR +
Sbjct: 63  EICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQ 122

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++    +   + +    R+         L  +E  +LEYL++   +   + QI   ++G
Sbjct: 123 ETDEDLLQFEDLSLNRRTREVFRGNRAVELTAKEFDLLEYLLSYPRQVFTRDQILEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL        V + R +GY++
Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEENNEKRLVHTVRGVGYAL 222


>gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator
           [uncultured prokaryote AT5]
          Length = 234

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  + L      D+  ++  L   G   +
Sbjct: 6   ILIVEDEEALVLLLRYNLEAEGYGVETVARGDEADLLLKERSPDLVILDWMLP--GLSGI 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA ++    P+I ++        +    +G DD + KP    E+ ARV A+ RR
Sbjct: 64  ELCRRLRARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRALLRR 123

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +    G + V  + +     G    L   E R+LE+LM   G+  ++ Q+ + 
Sbjct: 124 ALPERLADVLSFGDLEVDREKKRVSRAGRSVDLGPTEYRLLEFLMERPGRVFSREQLLNG 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G     ++E  V+ H+ +LRK L      DP+ + R  GY++D
Sbjct: 184 VWG-SQIYIDERTVDVHVGRLRKALNRGHETDPIRTVRGAGYALD 227


>gi|219853357|ref|YP_002470479.1| hypothetical protein CKR_0014 [Clostridium kluyveri NBRC 12016]
 gi|219567081|dbj|BAH05065.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 242

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G ++  + S   ++  +    E +      ++       
Sbjct: 15  ILVVDDEQPIADLIEVYLKNEGFTI--YKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR +   P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 73  TLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 132

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N+              + +  D  +  +  +   L  +E  IL  L +NRG+ V+  ++
Sbjct: 133 YNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEEL 192

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++G        N V  HI  LR+K+  +      + +   +GY I+
Sbjct: 193 FHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 241


>gi|306843562|ref|ZP_07476163.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO1]
 gi|306276253|gb|EFM57953.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO1]
          Length = 228

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLP--GVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +     G DD V KP    E+LARV A+ RR
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S  ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      DP+ + R  GYS 
Sbjct: 185 VWGP-DIYVDDRTVDVHVGRLRKAINVGRAVDPIRTVRGAGYSF 227


>gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 233

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++    D+  ++  L       
Sbjct: 4   ILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEA-ENPDILILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV AI RR +
Sbjct: 61  LEVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSE 120

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +         +N    G +++  D    +  GE   L  RE  +L +L ++ G+ + + 
Sbjct: 121 FAVDTQENEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232


>gi|295398639|ref|ZP_06808664.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973127|gb|EFG48929.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 238

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 99/230 (43%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  ++     +      +S + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIISFNLKNEGYEIDTAYDGQQALEKFASFQPDLVVLDLMLP--KIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQVP+I ++   S    +   + G DD V KP  +RE++ARV A  RR  V
Sbjct: 62  EVCRQIRKDSQVPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELMARVKANIRRTAV 121

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        +N  E G + +  D       GE   L  RE  +L YL  +  + + 
Sbjct: 122 VAEPVVADEVTEKDNIIEIGDLLIHEDEYIASKNGEDVELTHREFELLHYLSQHINQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
           +  +   ++G +D   +   V+  + +LR+K+        +  ++R +GY
Sbjct: 182 REHLLQTVWG-YDYFGDVRTVDVTVRRLREKIEENPSHPKILITRRGVGY 230


>gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 223

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 105/222 (47%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++I+D   ++D       ++G  +    + +   E+  ++    +  ++  L        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDIGIILLDIMLPD--ISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S+VP++ I+        L  F+ G DD V KP   +E++ARV AI  R   
Sbjct: 63  SLLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTSG 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   + E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++G
Sbjct: 123 ESEVEKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 183 -YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 221


>gi|17988267|ref|NP_540901.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 1 str. 16M]
 gi|237816486|ref|ZP_04595479.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus str. 2308 A]
 gi|17984036|gb|AAL53165.1| phosphate regulon transcriptional regulatory protein phob [Brucella
           melitensis bv. 1 str. 16M]
 gi|237788553|gb|EEP62768.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus str. 2308 A]
          Length = 255

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 34  IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLP--GVSGI 91

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +     G DD V KP    E+LARV A+ RR
Sbjct: 92  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 151

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S  ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 152 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 211

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 212 VWGP-DIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYSF 254


>gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +  +   + +E L+         I   ++  G   +
Sbjct: 6   ILIIEDEKQIARFIELELKHEGYDV--YVCYDGKEGLKKVEEIHPDLILLDIMLPGINGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR HS VPLI ++    +   +   DSG DD V KP    E+LAR+ A  R+ K 
Sbjct: 64  EICRKIRQHSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N          + + +  R  +   ++  L +RE  +LEYL+ N+G  + + QI   ++
Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +    + NVV+ +I  LR K+ +      + + R +GY  +
Sbjct: 184 G-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCE 225


>gi|312884258|ref|ZP_07743967.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368031|gb|EFP95574.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 229

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +R+               +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLRLDPVSHRVTANDTALDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEFAGHDKLIQTVRGAGYRF 225


>gi|310642600|ref|YP_003947358.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309247550|gb|ADO57117.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 238

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E   + + E  LQ +   D S I   ++  G   +
Sbjct: 8   ILIVDDEERIRRLLRMYLEKEGYEIE--EAEDGEIALQKATASDYSIILLDVMLPGMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   +R     P+I ++        +  F+ G DD V KP   RE++ RV AI RR   
Sbjct: 66  EVCTRLRQTKSTPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSE 125

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   V +N      + +  D       G    L  +E  +L YL  +  K  ++ +
Sbjct: 126 TAFLTKEAVPSNSIVFPNLIIEHDAHRVTAGGIEISLTPKEYELLHYLAVSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY ++ 
Sbjct: 186 LLKDVWN-YEFFGDLRTVDTHVKRLREKLNKVSPEAAAMITTVWGVGYKLEV 236


>gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 244

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +E            ++   D+  ++  +   G   L
Sbjct: 15  ILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATPPDLVVLDIQMP--GMDGL 72

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 73  TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +              G +R+    R+    G    L R E  +LE  +A+  + + + Q
Sbjct: 133 YAVAEQAADDEETLSFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQ 192

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 193 ILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239


>gi|299134022|ref|ZP_07027215.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298590769|gb|EFI50971.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 234

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERVPDLVVLDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA  +    P+I ++        +    +G DD + KP    E+LARV  + RR
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N    G I +  + R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 ASPERLANVLVYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGEEQDPIRTVRGAGYALD 226


>gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G S+    S   EE ++     DV  I   L+  G   +
Sbjct: 6   ILVVDDEEHIIELIKFNLEKNGFSV--LTSDNGEESIELVKNNDVDLIVLDLMLPGIDGI 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR        P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  EVCKRIRRMDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAVLRR 123

Query: 119 LKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +        +     + + ++  +  ++ +   L  +E  ++  L  NRGK +++  + 
Sbjct: 124 SEEKQTVRAIKLVVKDLMIDTEKHEVRIKDQPIELTLKEFELVRILAENRGKVLSRNLLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   E   V+ HI  LRKK+ +    + +++ R +GY +
Sbjct: 184 DEVWG-YDYFGETRTVDVHIRHLRKKIGDDQSGEYIETIRGVGYKM 228


>gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 241

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 98/232 (42%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  ++   + + E  L+     D   I   L+  G   +
Sbjct: 10  ILVVDDEDRIRRLLRMYLEREGYLID--EAEDGETALKKGLEIDYDLILLDLMLPGMDGV 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P+I ++        ++ F++G DD V KP   RE++ RV A+ RR   
Sbjct: 68  DVCRELRNKKATPVIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVLRRSSA 127

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++N      + +  D  +    G    L  +E  +L YL ++  K   + +
Sbjct: 128 TAFLSTETETHNVIVFPELTIDHDAHEVRAGGTEVSLTPKEYELLHYLASSPDKVFTREE 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++HI +LR+KL   +      + +   +GY ++ 
Sbjct: 188 LLRDVWN-YEFFGDLRTVDTHIKRLREKLNRASPKAAAMIHTVWGVGYKLEV 238


>gi|332653701|ref|ZP_08419445.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
 gi|332516787|gb|EGJ46392.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
          Length = 237

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 15/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G   +   + +    LQ +  ++   +   L+  G    E
Sbjct: 6   LIVEDEQNIVDILSFNLEREGY--DTLEAYDGNTGLQLALEQNPDLVLLDLMLPGMDGFE 63

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R IR   S VP++ ++        +   + G DD + KP   RE+LARV A  RR   
Sbjct: 64  VCRRIRETGSAVPILMLTAREEEADKVLGLELGADDYITKPFGMRELLARVKANIRRSAM 123

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      S  R E G + V  +       G    L +RE  ++ YL +  GK  ++
Sbjct: 124 APAQGEQAQPASGKRLELGRVVVDQEKATVYKDGNPLELTQREYDLICYLASQPGKVFSR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             +   ++       +   V+  + +LR+K+ +       + +KR +GY
Sbjct: 184 EALMEHVWNYEGYVGDVRAVDVAVRRLREKIEDDPASPKFIVTKRGMGY 232


>gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
 gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
          Length = 235

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    + + EE L+    ED   I   L+      L
Sbjct: 5   ILVVDDEKPISDIIKFNLEKEGYEV--VVAFDGEEALEKVEAEDPDLIILDLMLPKVDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +RA    P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAKRVRAKHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRREAT 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   AE         G I +  +      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 AQAPAEEDKNTDIKVGDITIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSQPQWLITRRGVGYYL 229


>gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 244

 Score =  244 bits (623), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +E   + +  E LQ +A      +   +   G   L
Sbjct: 15  ILVVDDEPAVREALRRSLVFEGYGVEV--AADGHEALQKAAATPPDLVVLDIQMPGMDGL 72

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 73  TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +              G +R+    R+    G    L R E  +LE  +A+  + + + Q
Sbjct: 133 YAVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQ 192

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 193 ILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239


>gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3]
 gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3]
          Length = 231

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  +V  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQIISTYEVDLMVLDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEMRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIE 230


>gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
 gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
          Length = 271

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G + E          + +    D+  ++  +       +
Sbjct: 48  ILVVDDEPRIRDLIREHLQYAGFTCEEAGDGAAALSILTQGGIDLVILDIMMPF--MDGM 105

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
              R +R      P+I ++        L   + G DD V KP   RE++ARV A+     
Sbjct: 106 TCLREMRTRKIMTPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLARTM 165

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R + S +    G + + +     +V G+  PL  +E  +L +L++N+G  +++ +I   
Sbjct: 166 PRTEDSQSSYVFGDLSIDTASHTVKVAGQEAPLTPKEFDLLVFLVSNKGIALSREKILQK 225

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   E+  V++HI  LR  L      + + +   +GY  D
Sbjct: 226 VWN-YDYYGEDRTVDTHIKMLRGHLG--PCRNYIVTVWGIGYKFD 267


>gi|154686557|ref|YP_001421718.1| hypothetical protein RBAM_021260 [Bacillus amyloliquefaciens FZB42]
 gi|308174102|ref|YP_003920807.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|154352408|gb|ABS74487.1| ResD [Bacillus amyloliquefaciens FZB42]
 gi|307606966|emb|CBI43337.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328552769|gb|AEB23261.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
 gi|328912433|gb|AEB64029.1| Transcriptional regulatory protein resD [Bacillus amyloliquefaciens
           LL3]
          Length = 240

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +   +E   + +    +  ++  D+  ++  +   G   +
Sbjct: 9   ILVVDDEARIRRLLRMYLERENYVIEEAENGDEAIKMGLASDYDLVLLDLMMP--GTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 67  EVCRQLREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++         N      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 127 TSYLTANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPGAAKKIVTVWGVGYKFEV 237


>gi|168232366|ref|ZP_02657424.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471011|ref|ZP_03076995.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|204927311|ref|ZP_03218513.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|238911469|ref|ZP_04655306.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|194457375|gb|EDX46214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|204323976|gb|EDZ09171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205333497|gb|EDZ20261.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 229

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 99/229 (43%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G     F  +E E++  +  +      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNG-----FQPVEAEDYDSAVNKLNEPWPDLILLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L+  + ++  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ 
Sbjct: 58  GGSGLQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +               +   E ++L + M +  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 178 QLLNHVWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225


>gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus pseudintermedius ED99]
          Length = 234

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E     E     +   + D+  ++  L  K    +E
Sbjct: 6   LVVDDEQSIVTLLKYNLEQSGYVVEVAQDGEEALQKEKETKPDLIVLDVMLPKK--DGIE 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + + IR+  +QVP++ ++        +   + G DD + KP   RE++ARV AI RR   
Sbjct: 64  VCKTIRSDKNQVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSSL 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  +     G IR+  D  +     E+  L  +E  +L YL+  +G+ + +  +
Sbjct: 124 VDHVRKEEEDEDIVIGSIRIRPDFFEVYRNDELLELTPKEFELLLYLVERQGRVITREHM 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            ++++  ++ A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 184 LNSVWN-YEFAGDSRIVDVHISHLRDKLEENPKQPQFIKTVRGLGYKLE 231


>gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112]
 gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112]
 gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 241

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       +   D+  ++  L       L
Sbjct: 11  ILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLP--KIDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +RA   +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 69  EVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 128

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 129 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 189 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235


>gi|126649989|ref|ZP_01722222.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
 gi|126593161|gb|EAZ87123.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
          Length = 228

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  F     +E L    RE +      ++       
Sbjct: 3   ILVVDDEKEIADLIELYLKNENYNV--FKYYTAQEALACMEREGLDLAILDIMMPHIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + + IR     P+I ++        ++ F  G DD + KP    E++ARV A  RR   
Sbjct: 61  TVLQKIRETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELIARVKAQLRRFTL 120

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K   N  +   + +  + R   +      L   E  IL YL +NRGK ++  ++F
Sbjct: 121 YNQSSKPHENTIDFAGLMMNKNTRQVLLNERQLSLTPTEFSILWYLCSNRGKVISSEELF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+G        N V  HI  LR+K+++ +     + +   +GY+I+
Sbjct: 181 QEIWGEK-YFNSNNTVMVHIRHLREKMKDSVENPKFIKTVWGVGYTIE 227


>gi|77463153|ref|YP_352657.1| phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126462025|ref|YP_001043139.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221639010|ref|YP_002525272.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|332558027|ref|ZP_08412349.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
 gi|77387571|gb|ABA78756.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126103689|gb|ABN76367.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|221159791|gb|ACM00771.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
 gi|332275739|gb|EGJ21054.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
          Length = 230

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D    ++        +G  +    + +    L   A  DV  ++  L       
Sbjct: 8   VVLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSV--SG 65

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +++      VP+I +S        +   ++G DD V KP    E++ARV +  R
Sbjct: 66  IEVCRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLR 125

Query: 118 RLKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R + S+     E   IR+  +        ++  L   E R+L   M   G+  ++ Q+  
Sbjct: 126 RARPSSVGLTLEFEDIRLDPETHKVHRGAQLLKLGPTEFRLLSTFMEKPGRVWSREQLLD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 186 RVWGR-DIYVDSRTVDVHVGRLRKALCLHGGEDPVRTVRGAGYAL 229


>gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 229

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +       F  +G  ++                 D+  ++  L   G    
Sbjct: 5   ILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEALEGDYDLVLLDIMLP--GMDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR +S +P+I ++    ++  +   D G DD V KP    E+ ARV A  R+   
Sbjct: 63  EVLKKIRENSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALRKRNP 122

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S   +  +   I +     +   QG    L ++E  +LE+LM N    +++ +I  +++G
Sbjct: 123 SIKKDVLKFAGIVMDLTTHEVRRQGVKIDLTKKEFDLLEFLMRNANIALSREKILRSVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + NVV+ +I  LR K+ +      + + R +GYS+
Sbjct: 183 -YDYYGDTNVVDVYIRYLRSKIDDPFDRKLIHTIRGVGYSL 222


>gi|37527767|ref|NP_931112.1| phosphate regulon transcriptional regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787203|emb|CAE16283.1| phosphate regulon transcriptional regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 229

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMLP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + ++ ++    +P++ ++     +  +   + G DD + KP   +E++ARV A+ RR
Sbjct: 63  QIIKQMKRNNNIRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARVKAVLRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   V  +  E   + + S       + +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMVMEDIIEMDGLVLDSTSHRVTSRDKALDMGPTEFKLLHFFMTHPERVYSREQLLNY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGA-NVYVEDRTVDVHIRRLRKVLEIGGHDKMVQTVRGTGYRF 225


>gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium
           glutamicum ATCC 13032]
 gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 232

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 106/231 (45%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G   +   + +    L   +R ++  +   L+  G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGF--DTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR  V
Sbjct: 62  DVCKELRSVSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGV 121

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +   AE           G +R+  D     V GE   +P +E  +LEYL+ N G+ + + 
Sbjct: 122 TETEAEELPLDDQILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231


>gi|282896029|ref|ZP_06304060.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199139|gb|EFA74009.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 250

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 105/231 (45%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSARE---DVSAIEAFLIG 55
           ++++D  L+++  +     +G  +    +G  ++E    L++ + E   D+  ++  L  
Sbjct: 22  LIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELMRNLETQSGELSFDLLVLDLMLPQ 81

Query: 56  KGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                L++ R++R   + +P++ +S   S    +   + G DD + KP   RE++AR  A
Sbjct: 82  --INGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 139

Query: 115 IYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + RR + SN       +   I +        V+G    L  +E R+LE  M+   +  ++
Sbjct: 140 LLRRQRFSNLPLIPTLKYKDINLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 199

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 200 EQLLDQVWGP-DFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 249


>gi|229826994|ref|ZP_04453063.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
           49176]
 gi|229788612|gb|EEP24726.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
           49176]
          Length = 245

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 93/238 (39%), Gaps = 22/238 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +    +     +    L    + D+  ++  L   G+   
Sbjct: 7   ILIVDDDEDISELISLYLVKECFDTKRAEDGDVAIRLFQEYQPDLILLDIMLP--GKDGY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S+VP+I +S    +   +   + G DD + KP   +E++ARV A+ RR   
Sbjct: 65  DVCREIRKTSKVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRFSS 124

Query: 122 SN------------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
                               NR     + +           +   +P +E  +  +L ++
Sbjct: 125 DEGVDKSAENTTIVEGTSNINRVIYADLEINLTNYSVTYNNKRVDMPPKELELFYFLASH 184

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +   + Q+   I+G ++   +   V+ H+ +LR+K+ +   +    +   +GY  +
Sbjct: 185 PNQVFTREQLLDRIWG-YEYIGDTRTVDVHVKRLRQKINDHAEWRL-STVWGVGYKFE 240


>gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 230

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D  I      G  +    +             D+  ++  L        
Sbjct: 6   ILVVDDEPNIRDLLITSLRFAGFQVRAVANGAQTISAVLEEEPDLIVLDVMLPD--MNGF 63

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A    P++ ++     +  +   ++G DD V KP    EI+AR+ AI RR  
Sbjct: 64  SVTKRLRGAGYTAPILFLTAKDETEDKIMGLNAGGDDYVTKPFSLDEIVARIQAILRRTM 123

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++      TG + +  D  D  V      L   E ++L YLM N  + ++K QI   ++
Sbjct: 124 QADEESIIRTGELTMDQDTHDVSVGDVSIDLSPTEFKLLRYLMLNPNRVLSKAQILDHVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   +  +VES+IS LR+K+        + +KR  GY +
Sbjct: 184 -EYDFNGDAGIVESYISYLRRKIDPHSSEPLIQTKRGFGYML 224


>gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300076681|gb|ADJ66080.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G S       +       + R D+  ++  L   G    
Sbjct: 18  ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLP--GMDGW 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK-PIHHREILARVAAIYRRLK 120
           E+ R +R  S VP++ ++     +  L   + G DD + K P   REI+ARV ++ RR  
Sbjct: 76  EICRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNA 135

Query: 121 VSNNRAETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   R    P    + +        V+GE   L   E R+L+   +  G+  ++ Q+ + 
Sbjct: 136 LVQQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQLLNH 195

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   D +V +  V++HI  LR+KL     G + + +   +GY  +
Sbjct: 196 LHD-DDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGYCFE 240


>gi|241763956|ref|ZP_04761998.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241366779|gb|EER61220.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 235

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G         E  +    +   DV  ++  L   G+  L 
Sbjct: 8   LIVEDEPAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLP--GQSGLM 65

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  RA      +P++ ++        +   D+G DD + KP   +E+LAR+ A+ RR 
Sbjct: 66  LARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + + +       QG+   +   E ++L + M +  +  +++Q+   +
Sbjct: 126 APEQVSDSVTIGELVLDAATYRVTFQGQPLKVGPTEFKLLHFFMKHSERVHSRSQLLDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGAAGA--MVETVRGAGYRL 225


>gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 232

 Score =  244 bits (623), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 104/228 (45%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G  +    + +  E L+ +  E    +   L+       
Sbjct: 6   ILVVDDEEHIVKLIKFNLENNGYKV--ITAADGGEALEKAKGEVPQLVLLDLMLPVMDGY 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R IR     S +P+I I+        +   + G DD + KP   RE++ARV A+ RR
Sbjct: 64  DVCREIRRDQSISNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRR 123

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            KV   +   + G I++     +   +GE   L  +E  +L+ L+ N+G+ + +  +   
Sbjct: 124 TKVDYIDKTFKFGNIQIDFQRHNVTKEGEKVELTLKEFELLQVLIKNKGRVMTRDFLLDK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           I+G ++   E   V+ H+  LR+K+ +       +++ R +GY  +++
Sbjct: 184 IWG-YEYIGETRTVDVHVRHLRQKIEDDDKNPKYIETIRGIGYRFNYS 230


>gi|257899652|ref|ZP_05679305.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257837564|gb|EEV62638.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 244

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +  + + + EE L+  A  +   I   L+      LE
Sbjct: 15  LVVDDEKPISDIVKFNLAKEGYDV--YTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +
Sbjct: 73  VAREVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATA 132

Query: 123 NNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               E         G + +  +      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 133 TREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLL 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 193 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 238


>gi|167587464|ref|ZP_02379852.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 233

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G       + E    L S    D+  ++  L   G+  +
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAANLISDVLPDLVLLDWMLP--GKSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++     Q  +   + G DD V KP   +E++AR+ A+ RR
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDP--EVQGEVF--PLPRRERRILEYLMANRGKRVAKTQ 172
              +++ +      +R+            G      L   E R+L + M +  +  ++TQ
Sbjct: 123 RAPQLTEDVVSINGLRLDPATHRVAAHADGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++G     VEE  V+ HI +LR  L+       +++ R  GY +
Sbjct: 183 LLDQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229


>gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
 gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
          Length = 229

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G  +    + +    L+S   E    +   L+  G    +
Sbjct: 5   LIVEDEDSLADPLAFLLRKEGFEVGV--AGDGPSALESFESEGADIVLLDLMLPGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   +
Sbjct: 63  VCKRLRMTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAEA 122

Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      E+GP+R+  +     V+G    LP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 EAEPVEEIGVLESGPVRMDIERHTVMVRGAAVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+    G  PV   + R LGY  +
Sbjct: 183 RVWG-SDYVGDTKTLDVHVKRLRSKIETDPGK-PVHLVTVRGLGYKFE 228


>gi|114462377|gb|ABI75119.1| transcriptional regulator OmpR family [Cylindrospermopsis
           raciborskii T3]
          Length = 272

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 104/231 (45%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSARE---DVSAIEAFLIG 55
           ++++D  L+++  +     +G  +    +G  ++E    L++   E   D+  ++  L  
Sbjct: 44  LIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELIRNLETQPGELSFDLLVLDLMLPQ 103

Query: 56  KGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                L++ R++R   + +P++ +S   S    +   + G DD + KP   RE++AR  A
Sbjct: 104 --INGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSVREMVARCRA 161

Query: 115 IYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + RR + SN       +   I +        V+G    L  +E R+LE  M+   +  ++
Sbjct: 162 LLRRQRFSNLPLIPTLKYKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 221

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 222 EQLLDQVWGP-DFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 271


>gi|52078905|ref|YP_077696.1| sensory transduction protein YclJ [Bacillus licheniformis ATCC
           14580]
 gi|52784279|ref|YP_090108.1| YclJ [Bacillus licheniformis ATCC 14580]
 gi|319648791|ref|ZP_08003002.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2]
 gi|52002116|gb|AAU22058.1| hypothetical sensory transduction protein YclJ [Bacillus
           licheniformis ATCC 14580]
 gi|52346781|gb|AAU39415.1| YclJ [Bacillus licheniformis ATCC 14580]
 gi|317389210|gb|EFV70026.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2]
          Length = 228

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 107/239 (44%), Gaps = 30/239 (12%)

Query: 2   FVLIDDRALV---------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++I+D   V         K+G+   F  DG+  EG+N  +  +W       D+  I+  
Sbjct: 3   ILMIEDNLSVCTMTEMFFAKEGFETEFVHDGL--EGYNRFKSGDW-------DLLIIDIM 53

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L       + + + +R  S VP+I ++   +    +  F+ G DD V KP     ++AR+
Sbjct: 54  LPS--MDGVTICKKVREESTVPIIMLTAKDTESDQVLGFELGADDYVTKPFSPLALVARI 111

Query: 113 AAIYRRLKVS-------NNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANR 164
            A+ RR + +       ++  ET   ++    R+  + G     L  +E  +L YL+ + 
Sbjct: 112 KAVSRRYQNAGRQDSADSDTLETEHFKINKKTREVFLDGVQIQNLTPKEFDLLYYLVQSP 171

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +  ++ Q+   ++G +    +E  V+ HI +LRKKL +      + +   +GY  D +
Sbjct: 172 KQVFSREQLLEQVWG-YQFYGDERTVDVHIKRLRKKLGSD-SRPFLYTVWGVGYKFDED 228


>gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 240

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +   +      +      S    D+  ++  L     +  
Sbjct: 11  ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGE-- 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR +S VP+I ++    ++  +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 69  RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E G + +   G    V G+   L   E ++L  L    G+  ++ ++   +
Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR K+ +       + +   +GY  +
Sbjct: 189 LG-YDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 232


>gi|239827301|ref|YP_002949925.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239807594|gb|ACS24659.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 225

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        +   S     + E    +  + + DV  I+  +         
Sbjct: 7   LIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMP--KMDGFT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           L   IR  S VP++ ++        +     G DD + KP    E++AR+ AI RR    
Sbjct: 65  LCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHN 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  N     GP+ +   GR   V G+   L  +E  +L +L  + G+  ++  + + ++G
Sbjct: 125 KQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D       V++HI  LR KL+     D + +   +GY  + +
Sbjct: 185 -YDYTGNARTVDTHIKTLRMKLKQA--SDFIQTVWGIGYKFEVS 225


>gi|293570841|ref|ZP_06681888.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|291609109|gb|EFF38384.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
          Length = 234

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +  + + + EE L+  A  +   I   L+      LE
Sbjct: 5   LVVDDEKPISDIVKFNLAKEGYDV--YTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +
Sbjct: 63  VAREVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATA 122

Query: 123 NNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               E         G + +  +      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 123 TREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 228


>gi|226315382|ref|YP_002775278.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098332|dbj|BAH46774.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 233

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + +        +G         +       +   D++ ++  +   G    
Sbjct: 6   ILIADDEAEIAELVALHVKKEGYHTIIAADGKAALQAVQTHSIDLAILDIMMP--GLDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R+IR    +P+I +S   S    +     G DD + KP +  E++ARV A  RR K 
Sbjct: 64  EVTRLIREQHNMPIIFLSAKTSDLDKISGLVMGADDYMTKPFNPMELVARVNAQLRRFKQ 123

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    SN   E G + ++ + R   + GE   L  +E  IL  L     K  +   
Sbjct: 124 LNQPAVAVASNKVLEAGGLVIYPEERTVSLYGETIELTPKEFDILYLLARYPKKVFSADN 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           IF  ++G        N V  HI  LRKKL   K     + +   +GYS 
Sbjct: 184 IFEMVWGEAYYEG-SNTVMVHIRTLRKKLGEEKTKNKWIKTVWGVGYSF 231


>gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
 gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
          Length = 229

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 15/227 (6%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEKVL 61
           ++DD   + +        +G  +  + + + EE L+  +    D+  ++  L       L
Sbjct: 2   VVDDEKPISEIVKYNLVKEGYEV--YTAFDGEEALEKVTEVEPDLVLLDLMLP--KMDGL 57

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 58  EVAREIRKTYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRREAS 117

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S        +    G + +  D       GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 118 SVKEEAGNQSELTIGDLTIHPDAYMVSKAGENIELTHREFELLYYLARHLGQVMTREHLL 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 178 QTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPGYLVTRRGVGYYL 223


>gi|297572194|ref|YP_003697968.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932541|gb|ADH93349.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 229

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A  +D        DG  +    +    + L    + DV  ++  L        +
Sbjct: 6   LIVDDEATFRDVLRFNLNRDGYDV--LTASNGVQALDVYKKADVILLDLMLPE--MSGED 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR HS VP+I ++   S    +   + G DD V KP  +RE++AR+ AI RR    
Sbjct: 62  VCRKIRQHSSVPIIMVTAKESEIDKVVGLEIGADDYVTKPYSYRELVARIRAILRRTGAE 121

Query: 123 NNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               E      G + +        V  +   +P RE  +LEYLM N G+ V + QI   I
Sbjct: 122 PATEEPQPITIGRVTIDPVAHVVYVDHQPISMPLREYELLEYLMENAGRVVTRGQILDRI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G+     +   ++ H+ ++R K+  + +    + + R +GY I
Sbjct: 182 WGIG-YVGDSKTLDVHVKRIRSKIEKDPVNPSLLVTVRGVGYKI 224


>gi|156935054|ref|YP_001438970.1| transcriptional regulator PhoB [Cronobacter sakazakii ATCC BAA-894]
 gi|156533308|gb|ABU78134.1| hypothetical protein ESA_02905 [Cronobacter sakazakii ATCC BAA-894]
          Length = 229

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + I+  +   ++P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     +   E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVDEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEQSGHDRMVQTVRGTGYRF 225


>gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 240

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 99/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLQYNLERSGYEVVTASDGEEALKQAETEKPDLIVLDLMLP--KLDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122

Query: 121 VS-----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++           + +   G +++  D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 123 IASPSFDGQNDVKDGQLIIGDLKILPDHYEAYFKSNQLELTPKEFELLLYLGKHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +  + SA++  +D A +  +V+ HIS LR K+         + + R LGY ++
Sbjct: 183 RDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIETNTKKPIYIKTIRGLGYKLE 234


>gi|295115391|emb|CBL36238.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 234

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +  F +   +E L    RE++  +   ++  G   L
Sbjct: 6   ILVVDDEKEIADLVEICLVSDGYRV--FKAENAKEGLDILDRENIHLVLLDIMMPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  + +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCRKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   + + N      + +  D     V  E   L   E  IL  L +N G+  +  
Sbjct: 124 LNPQSSALQSAKNEISIRGLVINKDNHKVTVYDEEIKLTPIEFDILYLLASNPGRVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +IF  ++         N V  HI +LR K++        + +   +GY I+
Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIE 233


>gi|291562685|emb|CBL41501.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 232

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG  ++     +           DV  ++  L   G    E
Sbjct: 5   LVVDDEKLIVKGIRFSLEQDGYEVDCAYDGDEAIERAKEREYDVVLLDVMLP--GHDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR  S++P+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQTIREFSEMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNNKK 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  ++    G +++  + R   ++ +   L  +E  +LE L+ N  K  ++  + 
Sbjct: 123 SGAAKRQKSSVVTEGDLKLDRESRRVFIKDKEINLTAKEFDLLELLVTNPNKVYSRESLL 182

Query: 175 SAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             ++G     + +   V+ H+ +LR+K+  +      V +K  +GY
Sbjct: 183 EYVWGNKAMVSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGY 228


>gi|326391416|ref|ZP_08212953.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992551|gb|EGD51006.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 231

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   IFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTLKKEKPDLVILDLMLP--GISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTSD 122

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE        + V       + +G V  L   E +IL++L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 235

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 101/232 (43%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  +    L  + + D+  ++  L   G   +
Sbjct: 4   ILVVDDELSIVTLLQFNIEKAGFEVITASDGQEGYELAIAEKPDLIVLDLMLP--GMDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+    VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRSEKIDVPILMLTAKDEELDKIIGLELGADDYLTKPFSPREVVARIKAIMRRTE 121

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                AE           G + +F +  +     ++  L  +E  +L +L  N+GK  ++
Sbjct: 122 SRKEAAEETESPTAELTIGDLHIFPESYEAYRGDQLLELTPKEFELLLFLATNKGKVFSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            Q+  A++  +D   E  +V+ H+S LR+K+         + + R  GY ++
Sbjct: 182 DQLLDAVWN-YDYIGETRIVDVHVSHLREKVEPDTKRPLYIKTIRGFGYKME 232


>gi|227502538|ref|ZP_03932587.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306835103|ref|ZP_07468144.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227076700|gb|EEI14663.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304569018|gb|EFM44542.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 236

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 18/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G   E   +L+    L+  A  D+  +   L+  G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGF--EPIIALDGPSALEKFADNDIDIVLLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +RA S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  DVCKQLRATSSVPVIMVTARDAEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGND 121

Query: 122 SNN--------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             +                  G +++  +     V GE   +P +E  +LEYL+ N G+ 
Sbjct: 122 QASNADAAEGAEAEDEQILSGGRVKMDVERHIVTVAGEPVAMPLKEFDLLEYLLRNAGRV 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + + Q+   I+G  D   +   ++ HI +LR K+         + + R LGY  +
Sbjct: 182 LTRGQLIDRIWGA-DYVGDTKTLDVHIKRLRTKIEEHPSRPKHLVTVRGLGYKFE 235


>gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51]
 gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +        G +G ++           L  + R D+  ++  L        
Sbjct: 9   ILIIEDEEKIARFVELELGYEGYNVTKAFDGRTGLELAETGRFDLILLDVMLP--KLNGT 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++   S+   +   DSG +D + KP    E+LAR+    R    
Sbjct: 67  EVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAP 126

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S        + + +D R   ++G+   L +RE  +L +L+ N+G  +++  +   ++G
Sbjct: 127 LSSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD A + N V+ +I  LR K+        + + R +GY I
Sbjct: 187 -FDFAGDTNAVDVYIRFLRGKIDEVFNLKFIHTVRGVGYVI 226


>gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 245

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++        DDG  +    S      L  +   DV  ++  L        
Sbjct: 21  ILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPD--IDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  R +R  S VP+I ++        +   ++G DD V KP   +E+ AR+ A+ RR + 
Sbjct: 79  ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + +  D       GE   L R E R+L  L +   +  ++ Q+   +
Sbjct: 139 AGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +G +D   +  +V+ H+ +LR K+        +  + R LGY I
Sbjct: 199 WG-YDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKI 241


>gi|325979111|ref|YP_004288827.1| phosphate regulon response regulator PhoB [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325179039|emb|CBZ49083.1| phosphate regulon response regulator PhoB [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 225

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  +      G   +GF++ E       S + D+  ++  L G  G  
Sbjct: 1   MIYCVEDDDDIRELMLYTLKTTGFVAQGFSNAELFWQAIESQKPDLILLDIMLPGSDGLS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +LE  +   + + +P+I  +   +    +   D G DD + KP    E+++R+ A+ RR 
Sbjct: 61  ILEELKGKMSTADIPVIMATAKGTEFDKVKGLDMGSDDYLVKPFGMMEMISRIKAVLRRS 120

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S      + G + +       +  G+   L  +E  +L  LM    +   + ++ + +
Sbjct: 121 QKSQRKQILQVGNLSLDIQNYTVKKDGKDISLTLKEFELLGLLMKYPNRVFTRQELLNQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +    E   V+ HI  LR KL +      + + R +GY ++
Sbjct: 181 WGEY-FVGETRTVDVHIGTLRTKLGDASH--LIKTIRGVGYRLE 221


>gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 228

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 109/227 (48%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D+  + +    L   +G  +    + +    L+  ++ ++S +   L+  G    E
Sbjct: 5   LIVEDQETLSEPLAFLLRKEGFDV--IIAPDGPTGLREFSQHEISIVLLDLMLPGMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR + +
Sbjct: 63  VCKKLRQSSTVPIIMVTARDTEMDKIVGLELGADDYVTKPYSARELIARIRAVLRRGRGT 122

Query: 123 -------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   E G +R+  +     V G+   +P +E  +LEYLM N G+ + + Q+  
Sbjct: 123 SGPDQFDDEILEVGNVRMDVERHSVWVDGKEISMPLKEFDLLEYLMRNEGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            ++GL D   +   ++ H+ +LR K+ +       + + R LGY  +
Sbjct: 183 RVWGL-DYVGDTKTLDVHVKRLRSKVEDDPSHPHHLITVRGLGYKFE 228


>gi|225181176|ref|ZP_03734622.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168145|gb|EEG76950.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 232

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G ++      E    L  +   D+  ++  L  K     
Sbjct: 6   ILVVDDEKPIAEILRYNLVQEGYAVVVAYDGEEATRLMQTESPDLVLLDIMLPKK--DGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++   +   T+   + G DD V KP   RE+LARV A  RR + 
Sbjct: 64  AVCRDIRRVSNVPIIMLTAKDTELDTVLGLELGADDYVTKPFSAREVLARVKAQLRRTQA 123

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +            ++V +   +    G    L  RE  +L YLM N G  +++ ++ S +
Sbjct: 124 AKGPGGEFLICDDLQVDTGRMEIRKNGVDIDLTYREYLLLVYLMRNAGYVISREKLLSEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +G +D   +E  V+  I +LR+K+  N      + +KR  GY
Sbjct: 184 WG-YDFYGDERTVDVTIRRLREKIEENPSQPRYIRTKRGAGY 224


>gi|3282774|gb|AAC25063.1| response regulator homolog PhoB [Vibrio cholerae]
          Length = 229

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      +    D+  ++  L G  G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI  LR  L +      + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRPLRNALEDAGHDKLIQTVRGAGYRF 225


>gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
 gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
          Length = 234

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 103/234 (44%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E  ++  + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSH 120

Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           + G + +  +    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 121 PIPVDEQEADSKPQPIQIGDLEIVPEAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|316936256|ref|YP_004111238.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603970|gb|ADU46505.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 237

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLESEGYEVEAVARGDDADTRMKERIPDLVVLDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA  +    P+I ++        +    +G DD + KP    E+LARV  + RR
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +  D R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 AAPERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNIGREQDPIRTVRGAGYALD 226


>gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 235

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E       +   D+  ++  L       L
Sbjct: 5   ILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEVALEQVEAENPDLIILDLMLP--KIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +RA   +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229


>gi|81427690|ref|YP_394688.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104602|gb|AAD10263.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609330|emb|CAI54376.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 237

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 101/232 (43%), Gaps = 18/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            +++DD   + D        +G  +  + + + EE LQ       D+  ++  L      
Sbjct: 5   ILVVDDEKPISDIVKFNLTKEGYDV--YTAYDGEEALQQVEEVVPDLILLDLMLPKV--D 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR 
Sbjct: 61  GLEVARQVRKSHDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANLRRQ 120

Query: 120 KVS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             +          N+    G + +  +      +G    L  RE  +L YL  + G+ + 
Sbjct: 121 GSTSQSDKEANEENHEINIGDLTIHPEAYIVSKRGTKIELTHREFELLHYLAKHIGQVMT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 181 REHLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 231


>gi|291165916|gb|EFE27963.1| DNA-binding response regulator YycF [Filifactor alocis ATCC 35896]
          Length = 230

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G   +   + +  +  Q   +E+V  I   ++       
Sbjct: 5   ILIIEDEKPISDIVKFNLKREGY--DIITAFDGLDGYQKGIQENVDLILLDIMLPSMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I ++        +   + G DD + KP   RE++ARV A  RR  +
Sbjct: 63  DVCRHIREKSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSLRELIARVKANIRRTSM 122

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            NN        +   + + +          V  L  RE  +L++L     +  ++ Q+  
Sbjct: 123 PNNNSAESDLIQHKNLVIDTSKYSVTKNDTVLELTVREYELLKFLAVQPNQVFSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
            ++G ++   +   V+  I +LR+KL +       + +KR +GY
Sbjct: 183 QVWG-YEYYGDIRTVDVTIRRLREKLEDDASNPTYILTKRGVGY 225


>gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 3502]
 gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Clostridium botulinum H04402 065]
          Length = 232

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++  +     +      +    + D+  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNSYNCICALNGIEALNIAKEEKPDLILLDLMLP--GMDGY 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR  + +   P+I I+        +   + G DD + KP   RE++ARV A+ RR
Sbjct: 64  EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               N  +++   G I V  +       GE   L  +E  +LE L+ N+GK + +  +  
Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            I+G ++   E   V+ HI  LRKK+ +       +++ R +GY  +
Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229


>gi|210617586|ref|ZP_03291642.1| hypothetical protein CLONEX_03866 [Clostridium nexile DSM 1787]
 gi|210149251|gb|EEA80260.1| hypothetical protein CLONEX_03866 [Clostridium nexile DSM 1787]
          Length = 226

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  +      G+   GF   +      +    ++  ++  L   GE  
Sbjct: 1   MIYCVEDDGNIRELVVYTLNTTGMEARGFEDGKSFMEALAFETPELILLDIMLP--GEDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L L + ++      ++P+I ++   +    +   D G DD V KP    E+++R+ A+ R
Sbjct: 59  LSLLKKLKNSAKTKEIPVIMVTAKGAEYDKVVGLDGGADDYVTKPFGMMELVSRIKAVLR 118

Query: 118 RLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K      +   G + +        V G+   L  +E  +L  L+ N    + + ++  
Sbjct: 119 RTKKEKEEGQYSVGNLSMDLKKHVVFVDGKQVTLTLKEFELLGRLVQNHNIVLTRDRLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D   E   V+ H+  LR+KL +    D + + R +GY +
Sbjct: 179 EVWG-YDFDGETRTVDVHVRTLRQKLGSAG--DMIQTVRGVGYRL 220


>gi|323706233|ref|ZP_08117800.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534397|gb|EGB24181.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 227

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G +    +               +  ++  L   G   +
Sbjct: 7   IYIVDDDRNICEIISLYLEKEGFATVKISDGITALNKIKEELPLLIILDLMLP--GIDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R  + VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  TLCKEVRKFTNVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEH 124

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N         + +       + +GE   L  +E  +  +L  +  K   + Q+   ++
Sbjct: 125 EENDSDSVTYPDLSISLSEYKVKYKGENVDLTPKELELFYFLCTHPNKVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G ++   +   V+ HI +LR+K+ +   +    +   +GY  + 
Sbjct: 185 G-YEYMGDSRTVDVHIKRLREKIGDGPNWKL-TTVWGVGYKFEV 226


>gi|290954998|ref|YP_003486180.1| response regulator [Streptomyces scabiei 87.22]
 gi|260644524|emb|CBG67609.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 239

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++            ++ R D+  ++  L   G   LE
Sbjct: 2   LVVDDDPTVAEVVTGYLDRAGYTVDRAGDGPAALARAAAHRPDLVVLDLMLP--GMDGLE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA   VP+I ++        +   + G DD V KP   RE++ RV ++ RR + +
Sbjct: 60  VCRRLRARGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRARPA 119

Query: 123 NN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++  +     +R+    R     G    L  RE  +L + + N G+  ++  +   ++G 
Sbjct: 120 SDARQLTAAGLRLDPAARHATRDGAELALTLREFDLLAFFLRNPGRAHSREDLMREVWGW 179

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             +  + + V  H+ +LR K+  +      + +   +GY  +
Sbjct: 180 --DFGDLSTVTVHVRRLRGKIEHDPAQPRLIRTVWGVGYRFE 219


>gi|116670002|ref|YP_830935.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116610111|gb|ABK02835.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 247

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  ++          L +    D+  ++  L   G   +
Sbjct: 18  ILLVEDEQTIAGVVRDYLVQAGFQVDLAADGFTALRLAAERHPDLVLLDRMLP--GLDGV 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    VP+I ++   +    +   + G DD + KP   RE++ RV ++ RR   
Sbjct: 76  EVCRRLRQTMSVPVIMLTALGTEDDRILGLEVGADDYITKPFSPRELVLRVRSVLRRSVQ 135

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +     +    R     G    L  RE  +L + +    +  ++ ++  A++
Sbjct: 136 EFSPEPAVQVAGFELNPAARTVTHHGSPLALTIREFDLLAFFLRRPNQVFSREELIRAVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G   +  + + V  H+ +LR+K+  +      + +   +GY +D
Sbjct: 196 GW--DFGDLSTVTVHVRRLREKIEADPTRPALLKTVWGVGYRLD 237


>gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
 gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
          Length = 233

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 6   VVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLP--GNDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 64  VCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +  + N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 124 PAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229


>gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 294

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V          +G +++  +S E    +      D+  ++  +   G   L
Sbjct: 74  ILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQPPDLVILDIMMP--GMDGL 131

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA   ++P++ ++   +    +   ++G DD V KP     ++ARV A+ RR +
Sbjct: 132 EVLQRLRAADPELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALLRRHQ 191

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      + + +             L   E ++L   M +  + + K Q+   ++G
Sbjct: 192 AERPQVLRFADLVLDTGTYTARRGQREIHLTALEFKLLPEFMLHPRQVLNKDQLLERVWG 251

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV+E ++ +LR+KL  +     + + R +GY +
Sbjct: 252 -YDFGGNANVLEVYVKQLRQKLEAEGEPRLIHTVRGVGYVL 291


>gi|225028064|ref|ZP_03717256.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353]
 gi|224954612|gb|EEG35821.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353]
          Length = 236

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   + D       +DG  +    + + E+ LQ+     +V  +   ++  G   
Sbjct: 7   ILVVDDDKEIADLVEIYLVNDGYQV--LKASDGEQCLQTLKEHPEVRMLILDIMMPGIDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S +P++ +S        +  F +G DD + KP H  E+LARV +  +R  
Sbjct: 65  LEVCREIRKTSNIPILILSAKAEDMDKIVGFGTGADDYLTKPFHPLELLARVKSQMKRYT 124

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      S +  E   + +       +  G+   L   E  IL  L +NR +  + 
Sbjct: 125 TIQLGEEQQPASKDEIEIQDLTINKAAHVVKKNGKEVALTPIEFDILYLLASNRDRVFST 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
            +IF  ++      V  N V  HI +LR+K+ +      +  +   +GY I+
Sbjct: 185 DEIFEKVWNEKVYEVN-NTVMVHIRRLREKIEDNSRSPKILKTVWGVGYKIE 235


>gi|90023478|ref|YP_529305.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89953078|gb|ABD83093.1| Phosphate regulon transcriptional regulatory protein phoB
           [Saccharophagus degradans 2-40]
          Length = 234

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D           ++      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     S++P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   +   + +        +      +   E R+LE+ + ++ +   + Q+   
Sbjct: 124 TDSMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L  +     + + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALSLEGHDRFIQTVRGAGYRF 226


>gi|220932997|ref|YP_002509905.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219994307|gb|ACL70910.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 226

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 101/227 (44%), Gaps = 16/227 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +++         G  +E     E E W + +   D+  ++  L       L
Sbjct: 4   ILVIDDEENIRELIKFNLETAGYRVELAADGE-EGWDRLNDSIDLIILDLMLPR--IDGL 60

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R++     +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 61  SFCRQVRSNNRFKDIPIIMLTAKGEEVDKIIGLEMGADDYITKPFSPRELVARIKAVLRR 120

Query: 119 LKVSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++ +  +      +     +     +    GEV  L  +E  +L +L+ N GK + +  +
Sbjct: 121 VQKNEEKSDNELIKKADFELDVSSHEARKGGEVLNLTPKEFDLLRHLLVNSGKVLTRDIL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G ++ A +   V+ HI +LR+K+    G + + + R +GY  
Sbjct: 181 LEKVWG-YEYAGDTRTVDVHIRRLRRKI----GDNYIVTVRGVGYKF 222


>gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e]
 gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland
           1988]
 gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL
           R2-561]
 gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161]
 gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL
           J2-003]
 gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28]
 gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e]
 gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 237

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLP--GRDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++           E G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231


>gi|221315596|ref|ZP_03597401.1| hypothetical protein BsubsN3_17947 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320512|ref|ZP_03601806.1| hypothetical protein BsubsJ_17915 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324796|ref|ZP_03606090.1| hypothetical protein BsubsS_18066 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 293

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 8/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G      ++   EE +       V  I   ++  G    
Sbjct: 62  ILIVDDEKAIVDMIKRVLEKEGYR-NILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGF 120

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R   
Sbjct: 121 EACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 180

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                SN               +  V GE      +  ++L+Y   +    ++K QI+  
Sbjct: 181 SKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 240

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           ++G +    + N V  HI KLR+K+ R+    + + + R LGY    N
Sbjct: 241 VWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 287


>gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 234

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 101/233 (43%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE------EWLQSSAREDVSAIEAFLIG 55
            +++DD   ++       G +G  +                  Q SA  D+  ++  L G
Sbjct: 4   LLIVDDDDGIRTTLEEALGQEGFEVACAADGRQAIQQIDASQRQGSASFDLVLLDLMLPG 63

Query: 56  KGEKVLELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
            G   L++ R + R+    P++ +S   +    +   + G DD + KP   RE++AR  A
Sbjct: 64  VG--GLDVCRHLRRSDPHTPILMVSARDTETDRVLGLELGADDYLVKPFGLRELVARCRA 121

Query: 115 IYRRLKVSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           + RR + +  R         G + ++ D      +GE   L  +E R++E+ M N G+  
Sbjct: 122 LLRRSQQTIERFPVGQIIHHGDLSLYPDEFRVTREGERVNLSPKEYRLVEFFMQNPGRVW 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++ Q+   ++G  D  V+   V+ HI  LR+KL  N    + + + R  GY  
Sbjct: 182 SRNQLIDQVWGT-DYVVDTKTVDVHIRWLREKLEVNPSAPEHILTVRGFGYRF 233


>gi|56750542|ref|YP_171243.1| phosphate sensor two-component response regulator [Synechococcus
           elongatus PCC 6301]
 gi|81299821|ref|YP_400029.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|730805|sp|P39663|SPHR_SYNE7 RecName: Full=Alkaline phosphatase synthesis transcriptional
           regulatory protein sphR
 gi|391921|dbj|BAA02453.1| SphR [Synechococcus elongatus PCC 7942]
 gi|56685501|dbj|BAD78723.1| phosphate sensor two-component response regulator [Synechococcus
           elongatus PCC 6301]
 gi|81168702|gb|ABB57042.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 257

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 97/234 (41%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE---------EWLQSSAREDVSAIEAF 52
            ++++D A+++D    +   +G +++                 E    +   D+  ++  
Sbjct: 26  ILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDLM 85

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L       L+  R++R     VP++ +S   +    +   + G DD + KP   RE++AR
Sbjct: 86  LPAV--NGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVAR 143

Query: 112 VAAIYRRLKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             A+ RR +              +++F +     +      L  +E R+LE  M +  + 
Sbjct: 144 CRALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRV 203

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++ Q+   I+G+ D   +   ++ HI  LR+K+  N      + + R  GY +
Sbjct: 204 WSRDQLLEKIWGI-DFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256


>gi|226312004|ref|YP_002771898.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094952|dbj|BAH43394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 238

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 98/233 (42%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++  ++ E    +   +  D+  ++  L   G   +
Sbjct: 7   ILVVDDEERIRRLLKMYLERENFLIDEADNGEQAVEMAVGSDYDIILLDLMLP--GMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R     P+I ++        +  F++GVDD V KP   RE++ RV AI RR   
Sbjct: 65  EVCQRVREFKATPIIMLTAKGEETNRVHGFEAGVDDYVVKPFSPREVMYRVKAILRRSSA 124

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     S++      + +  D       G+   L  +E  +L YL  +  K   + 
Sbjct: 125 TAYLKTETFNSHSVLVFPELTIDHDAHKVIASGQEVSLTPKEYELLHYLALSPDKVFTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           ++   ++  ++   +   V++HI +LR+KL   +    + + +   +GY ++ 
Sbjct: 185 ELLKDVW-HYEFFGDLRTVDTHIKRLREKLNRVSPQAANMIATVWGVGYKLEV 236


>gi|154503112|ref|ZP_02040172.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
 gi|153796106|gb|EDN78526.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
          Length = 231

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 105/224 (46%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD + ++          G ++ E  + +E  ++        +  ++  +       
Sbjct: 12  ILVVDDESRMRKLVKDFLVRQGYTVLEAADGMEAMDYFYEDKDIALIILDVMMP--KMDG 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R IR HS+VP+I ++     +  L  FD GVD+ ++KP   + ++ARV AI RR +
Sbjct: 70  WQVCREIRMHSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRTQ 129

Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S N  E   G I V          G    L  +E  +L Y + N+G  +++ +I + ++
Sbjct: 130 GSGNTDEISAGGIVVDKAAHTVMSDGSPVDLSFKEFELLTYFIENQGIALSREKILNNVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +D   +   +++H+ KLR KL +K   + + +   +GY  + 
Sbjct: 190 N-YDYFGDARTIDTHVKKLRSKLGDKG--EYIKTIWGMGYKFEV 230


>gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 235

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++              + R D+  ++  L   G    
Sbjct: 3   ILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLP--GIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + RI+R  S VP+I ++    ++  +   ++G DD + KP    E+LAR+ A+ RR   
Sbjct: 61  AVCRILRRESDVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTPK 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +R   GP+ +    R+    G    L  +E  +L  L  + G+ + + +I   +
Sbjct: 121 VEGRPADRVIVGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIERV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +G +D   +   V++H+  LR KL         +++ R +GY ++
Sbjct: 181 WG-WDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLN 224


>gi|213965034|ref|ZP_03393233.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
 gi|213952570|gb|EEB63953.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
          Length = 231

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +    L   +G  +      +      S A  D+  ++  L   G    E
Sbjct: 5   LIVEDETALAEPLAFLLQREGFEVRMAADGQEALAEFSKAEPDIVLLDLMLP--GMSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR +  
Sbjct: 63  VCKNIRLKSSVPVIMVTARDTEIDKVVGLEIGADDYVTKPYSSRELIARIRAVLRRGRHD 122

Query: 123 N---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +              GP+ +  +     V G+   +P +E  +LEYL+ NRG+ + + Q+
Sbjct: 123 DSDDVEDLYEEVLRGGPVVLDVERHVVTVDGDDVAMPLKEFDLLEYLLRNRGRVLTRGQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              ++G  D   +   ++ HI +LR K+ RN    + + + R LGY  +
Sbjct: 183 IDRVWG-SDYVGDTKTLDVHIKRLRSKIERNPSSPEFLVTVRGLGYKFE 230


>gi|157691146|ref|YP_001485608.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157679904|gb|ABV61048.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 227

 Score =  243 bits (622), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 27/237 (11%)

Query: 2   FVLIDDRALV---------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++I+D   V         ++G+ A F  DG   +G N  + E+        D+  ++  
Sbjct: 3   ILMIEDNQSVCTMTEMFFQREGFQAEFVHDG--QDGLNRFKQED------DWDLLILDIM 54

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L       L + + +R  S VP+I ++   +    +  FD G DD V KP     ++AR+
Sbjct: 55  LPS--MDGLTICQKVRQISDVPIIMLTAKETESDQVLGFDLGADDYVTKPFSPLTLMARI 112

Query: 113 AAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGK 166
            A+ RR     ++  + R  T    +    R+  + GE    L  +E  +L + + +  +
Sbjct: 113 KAVKRRFTQTTIQKEDERLATAHFLLDKKTREVFLDGEPIENLTPKEYDLLCFFIQHPRQ 172

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++ Q+   I+G +    +E  V+ HI +LR+K+ +      + +   +GY  D +
Sbjct: 173 VFSREQLLEQIWG-YQFYGDERTVDVHIKRLRQKIGD-GPKPFLYTVWGVGYKFDED 227


>gi|225390635|ref|ZP_03760359.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
           DSM 15981]
 gi|225043320|gb|EEG53566.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
           DSM 15981]
          Length = 235

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 101/230 (43%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       +G+ ++     E    L      D+  ++  L        
Sbjct: 4   ILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIELARKTEYDMVLLDVMLPKH--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR  S +P+I ++        +   + G DD ++KP +  E+ AR+ AI RR   
Sbjct: 62  EVCQAIREFSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIMRRSGK 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + +++    G +++ ++ R   + G    L  +E  +LE L+ N  K  ++  
Sbjct: 122 NRKNRKEEQNSHVIGAGDLKMDTESRRVYISGREINLTAKEFDLLELLVRNPNKVYSREA 181

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + + ++G    ++ +   V+ H+ +LR+K+  +      V +K  +GY  
Sbjct: 182 LLTYVWGNRAMDSGDVRTVDVHVRRLREKIEPSPSDPKFVHTKWGVGYYF 231


>gi|325066495|ref|ZP_08125168.1| PhoP-like protein [Actinomyces oris K20]
          Length = 238

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSARE------DVSAIEAFLI 54
            +L++D    +D        DG  + E  +     E  ++S R       D+  ++  L 
Sbjct: 7   ILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLMLP 66

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                  E+   IR  S VP+I ++   +    +   + G DD V KP  +RE+LAR+ A
Sbjct: 67  R--LDGTEVCTRIRRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 124

Query: 115 IYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + RR + +    E     G +R+  +  +  V GEV  +P RE  +LE  + + G+ + +
Sbjct: 125 VLRRSRAAAPEPEPVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +QI   ++G  D   +   ++ HI +LR ++  +      + + R LGY +D
Sbjct: 185 SQILERLWGP-DYEGDTKTLDVHIKRLRGRIEVDASKPVLITTVRGLGYRLD 235


>gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
 gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein
           SYNPCC7002_A0851
 gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
          Length = 251

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 105/233 (45%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-------EGFNSLEFEEWLQSSAREDVSAIEAFLI 54
            ++++D A+++D  +    ++G  +        G N L+  E+       D+  ++  L 
Sbjct: 21  ILVVEDEAVIRDMIVMGLEEEGYEVFFADNGRTGLNMLQNPEFNAPDMPLDLVILDIMLP 80

Query: 55  GKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L+L R +R   + +P++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  EV--NGLDLCRFLRYQGNTIPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVARCR 138

Query: 114 AIYRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR +       N+  +   I +F +     V+GE   L  +E R+LE  M+   +  
Sbjct: 139 ALLRRQQFIRSTPKNSVRQFKDISLFPEECRVTVRGEEVSLSPKEYRLLELFMSYPRRVW 198

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++ Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 SRDQLIEQVWGA-DFLGDTKTVDVHIRWLREKLELDPSQPEYLITVRGFGYRF 250


>gi|89092214|ref|ZP_01165168.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanospirillum sp. MED92]
 gi|89083302|gb|EAR62520.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanospirillum sp. MED92]
          Length = 231

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++         G       +      L    + D+  ++  +   G   +E
Sbjct: 8   LIVDDEAPIREMIAVALEMAGYQCLEAENANQAHGLIVDDKPDMVLLDWMMP--GASGIE 65

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             R +R     + +P+I ++        +   ++GVDD + KP   RE++AR+ A+ RR 
Sbjct: 66  FARRLRKDETTADIPIIMLTAKGDEDNKIKGLEAGVDDYITKPFSPRELVARLKAVLRRT 125

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K          + +               L   E R+L++ M ++ +  +++Q+   +
Sbjct: 126 TPKGIEEPVTVDGLTLDPISHRVTSDLNPIELGPTEFRLLQFFMTHQDRAYSRSQLLDMV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G  +  VEE  V+ HI +LRK L ++  +  V + R  GY    N
Sbjct: 186 WGG-NVYVEERTVDVHIRRLRKALGDRHDY-LVQTVRGTGYRFSSN 229


>gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 713

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  ++ +           D+  ++  L   G    
Sbjct: 489 ILLIEDEVSIAELQRDYLEINDFMVDIQHNGDEGLKQALHGDYDLIILDIMLP--GMNGF 546

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IRA + +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 547 EICKQIRAVNNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 606

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K +NN      I + +  R   V GE      +E  +L + + +  + ++K Q++ 
Sbjct: 607 LASNKPTNNMLSIHGITIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYE 666

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             +G ++ A + + V  HI KLR+K+ R+      +++    GY ++ 
Sbjct: 667 RNWG-YESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRLNV 713


>gi|59712595|ref|YP_205371.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Vibrio fischeri ES114]
 gi|59480696|gb|AAW86483.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Vibrio fischeri ES114]
          Length = 230

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 96/222 (43%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +    L      D+  ++  L G  G  +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGSGINL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +      ++P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRVS 124

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   +++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTSIEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L  +     V + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEVEGHDRLVQTVRGAGYRF 225


>gi|124266470|ref|YP_001020474.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124259245|gb|ABM94239.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 233

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +         G  +    + +  +    S   D+  ++  L   G+  L 
Sbjct: 5   LVVEDESAIAELISINLRHAGYEVTIAATADQAQLAIDSVLPDLVILDWMLP--GQSGLA 62

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L +  R  S+    P+I ++        +   D+G DD + KP    E++AR+ A+ RR 
Sbjct: 63  LAKRWRGESRTKELPVIMLTARAEEGDKVAGLDAGADDYLTKPFSTHELMARIRAVLRRK 122

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++  E G +R+    R      +   +   E R+L +LM +  +  ++ Q+   +
Sbjct: 123 APEALDSAVELGVLRLDPSTRRVARGEQEVKIGPTEFRLLHFLMTHPERVHSRAQLLDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        +++ R  GY +
Sbjct: 183 WGDH-VFIEERTVDVHVKRLREALAPVACSTMIETVRGAGYRL 224


>gi|262276591|ref|ZP_06054400.1| phosphate regulon transcriptional regulatory protein PhoB
           [Grimontia hollisae CIP 101886]
 gi|262220399|gb|EEY71715.1| phosphate regulon transcriptional regulatory protein PhoB
           [Grimontia hollisae CIP 101886]
          Length = 229

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G   +   + +++  L+         I    +  G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGY--QAVEAEDYDSALEKICEPYPELILMDWMLPGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + ++      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  NLIKHLKRDELTRQIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  ++  +   +++           +   +   E ++L + M ++ +  ++ Q+ + 
Sbjct: 123 VSPTSLDDVIDVQGLKLDPVSHRVTSNDKPLEMGPTEFKMLHFFMTHQERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEEHGHDKLVQTVRGAGYRF 225


>gi|168334022|ref|ZP_02692241.1| two component transcriptional regulator, winged helix family
           protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 227

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G +     +G  ++             S   DV  ++  L       LE
Sbjct: 6   LVVDDEKLIVKGIVFSLSQEGWDVDSAYDGAEAINAIKSENYDVVILDVMLPE--YTGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + +I+R  S VP+I ++        +   + G DD + KP +  E+ AR+ A+ RR    
Sbjct: 64  VCQIVREFSNVPIIMLTAKGDDMDKIMGLEYGADDYITKPFNVLELKARIKAVLRRSIQE 123

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      E G +R+  + +   +      L  +E  +LE    +RGK   + Q+  +I+
Sbjct: 124 KETEKKTLEIGDLRLECNSKRVFLNNNEINLTSKEFDMLELFATHRGKVYNREQLLDSIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G      +   V+ H+ +LR+K+    G  + + +K  +GY  
Sbjct: 184 GKG-YPGDVRTVDVHVRRLREKVEPNPGQPEYIYTKWGVGYYF 225


>gi|282899348|ref|ZP_06307317.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195805|gb|EFA70733.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 249

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 104/231 (45%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSARE---DVSAIEAFLIG 55
           ++++D  L+++  +     +G  +    +G  ++E    L++   E   D+  ++  L  
Sbjct: 21  LIVEDEELIREMLVVALEGEGYEVMTAKDGRCAVELIRNLETQPGELSFDLLVLDLMLPQ 80

Query: 56  KGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                L++ R++R   + +P++ +S   S    +   + G DD + KP   RE++AR  A
Sbjct: 81  --INGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 138

Query: 115 IYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + RR + SN       +   I +        V+G    L  +E R+LE  M+   +  ++
Sbjct: 139 LLRRQRFSNLPLIPTLKHKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 198

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 EQLLDQVWGP-DFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 248


>gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum]
          Length = 232

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 106/231 (45%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G   +   + +    L   +R ++  +   L+  G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGF--DTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR  V
Sbjct: 62  DVCKELRSVSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGV 121

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +   AE           G +R+  D     V GE   +P +E  +LEYL+ N G+ + + 
Sbjct: 122 TETEAEELPLDDEILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231


>gi|210630068|ref|ZP_03296230.1| hypothetical protein COLSTE_00114 [Collinsella stercoris DSM 13279]
 gi|210160688|gb|EEA91659.1| hypothetical protein COLSTE_00114 [Collinsella stercoris DSM 13279]
          Length = 236

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++   +      G+  EGF S    +   +    D   ++  L       
Sbjct: 12  MIYYVEDDDNIRGLTLYALRQQGIEAEGFASDSEFKAAVARRVPDAVLLDIMLPDT--DG 69

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +RA    + VP++ ++   S    +   D G DD + KP    E+ +R  A+ R
Sbjct: 70  LEIMRRLRADQATATVPIMMLTAKDSELDKVVALDGGADDYLTKPFSLMELTSRCRALLR 129

Query: 118 R----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R     + ++   + G I +    R   V+G+   L  RE  +LEYLM   G    +  +
Sbjct: 130 RGGMTSRPASETLQVGGIELSPSRRTVRVEGQELKLTLREFDLLEYLMRKPGVVFTRESL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +++G +D       V+ H+  LR+KL +    D +++ R +GY +
Sbjct: 190 LQSVWG-WDFDGGSRTVDVHVQTLRQKLGDH--ADRIETVRGVGYRL 233


>gi|167036701|ref|YP_001664279.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115125|ref|YP_004185284.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855535|gb|ABY93943.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928216|gb|ADV78901.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 231

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   IFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTFKKEKPDLVILDLMLP--GISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTSD 122

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE        + V       + +G V  L   E +IL++L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|295395813|ref|ZP_06806001.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971348|gb|EFG47235.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G       + +       S R D+  ++  L   G+  L
Sbjct: 5   ILVVDDDTALAEMIGIVLKSEGFEPHFCATGDGAVEAFRSVRPDLILLDLMLP--GKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++        +   +SG DD V KP   +E++ARV A  R  + 
Sbjct: 63  EVCREIREESGVPIVMLTAKSDTMDVVKGLESGADDYVPKPFKPKELVARVRARLRMSEP 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S     + G + +   G   E  G+   L   E  +L  L     +  ++  +   ++G 
Sbjct: 123 SAPEILKVGDVSIDVAGHTVEKAGKPVSLTPLEFELLVALARKPWQVFSRETLLEEVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+       D V + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRSKIEKDPEKPDIVVTVRGVGYK 221


>gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 238

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +  F + + EE L+     D   I   L+      L
Sbjct: 5   ILVVDDEKPIVDIEKFNLTKEGYEV--FVAYDGEEALKQVNEVDPDLIILDLMLPKIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREVRKTKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S         N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 SSGNSSEGDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYL 230


>gi|88799154|ref|ZP_01114734.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
           sp. MED297]
 gi|88778137|gb|EAR09332.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
           sp. MED297]
          Length = 240

 Score =  243 bits (621), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++   A     G      ++ +    +    + D+  ++  +       +
Sbjct: 11  ILIVDDEAPIREVIAAALEMAGYRTLEASNAQDAHSIVVDQKPDLILLDWMMPQV--SGV 68

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R ++      ++P+I ++        +   ++G DD + KP   RE++AR+ A+ RR
Sbjct: 69  EFARRLKRDPLTAEIPIIMLTAKGEEDHKITGLEAGADDYITKPFSPRELVARLKAVLRR 128

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +   E   +++  +       G+   +   E R+L++ M++  +   + Q+   
Sbjct: 129 STPAGIDEPIEINGLKLDPNSHRITAHGDELSMGPTEFRLLQFFMSHAERAYTRGQLLDQ 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  V+E  V+ HI +LRK L ++     + + R  GY  
Sbjct: 189 VWGG-NVYVDERTVDVHIRRLRKGLGDEF-KSLIQTVRGTGYRF 230


>gi|227820874|ref|YP_002824844.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium fredii NGR234]
 gi|227339873|gb|ACP24091.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium fredii NGR234]
          Length = 223

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 153/223 (68%), Positives = 181/223 (81%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LVKDGY +LFG +G+   GF+  +F EW+ ++A  D+ A+EAFLIG+GE  
Sbjct: 1   MIVVVDERELVKDGYASLFGREGIPSTGFDPKDFGEWVNTAADSDIDAVEAFLIGQGESA 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LPR IR  SQ P+I +SD PSL+ TL  FD GVDDVV KP+H REILARVAAI RRLK
Sbjct: 61  FSLPRAIRDRSQAPVIAMSDTPSLENTLALFDCGVDDVVRKPVHPREILARVAAIRRRLK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  + GPIRVF+DGRDPE+ GEVF LPRRERRILEYL+ANRG+RV+K+QIF+AIYG+
Sbjct: 121 AIANYTDIGPIRVFADGRDPEINGEVFALPRRERRILEYLVANRGRRVSKSQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDE VEENVVESHISKLRKKLR KLGFDP+DSKRFLGY IDWN
Sbjct: 181 FDEDVEENVVESHISKLRKKLRKKLGFDPIDSKRFLGYCIDWN 223


>gi|212638880|ref|YP_002315400.1| transcriptional regulator of redox response ResD (REC-wHTH)
           [Anoxybacillus flavithermus WK1]
 gi|212560360|gb|ACJ33415.1| Transcriptional regulator of redox response ResD (REC-wHTH)
           [Anoxybacillus flavithermus WK1]
          Length = 244

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++   + E    L      D+  ++  L   G+  +
Sbjct: 13  ILVVDDEERIRRLLRMYLEREQYVIDEAENGEEALALALENDYDLILLDLMLP--GKDGI 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 71  EVCKQLREKKATPVIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRTAN 130

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + +  D       G    L  +E  +L +L  +  K   + Q
Sbjct: 131 SPYVPTDTTARDVLVFPHLTIDHDAHRVTADGHEVSLTPKEYELLHFLAKSPDKVFDREQ 190

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 191 LLKEVW-HYEFFGDLRTVDTHVKRLREKLNKVSPAAAKMIVTVWGVGYKFEV 241


>gi|86739691|ref|YP_480091.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566553|gb|ABD10362.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 321

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD ALV +       + G  ++          +  +   D+  ++  L   G   +E
Sbjct: 59  LVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLP--GLDGIE 116

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +RAH  VP+I ++        +   + G DD V KP   RE+  RV ++ RR    
Sbjct: 117 VFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANET 176

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + V +  R     G    L  RE  +L +L+   G+   + ++   +
Sbjct: 177 VPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEHV 236

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +G      + + V  HI +LR+K+ +       + +   +GY  D
Sbjct: 237 WGW--SYGDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYD 279


>gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium HTCC2083]
 gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 227

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A  ++        +G  +    S +    L      D+  ++  L       +
Sbjct: 6   ILVVEDEAAQREVLSYNLEAEGYRVLQGESGDEGLLLARENVPDLIVLDWMLPE--MSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +++      +P+I +S        +   ++G DD V KP   +E++ARV A  RR
Sbjct: 64  EVCRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLRR 123

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +    + +   I +  +       G    L   E R+L  LM   G+   + Q+   
Sbjct: 124 TRPAALGAQLDFEDIVLNGETHKVTRAGVELKLGPTEYRLLSQLMEKPGRVWPREQLLDH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V+   V+ H+ +LRK L  + G DP+ + R  GY+ 
Sbjct: 184 VWGR-DAFVDTRTVDVHVGRLRKALTAEGGSDPIRTIRGTGYAF 226


>gi|116621283|ref|YP_823439.1| two component heavy metal response transcriptional regulator
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116224445|gb|ABJ83154.1| two component heavy metal response transcriptional regulator,
           winged helix family [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 238

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++++D   + D         G +++   +      L      D+  ++  L    G +V
Sbjct: 3   ILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGLQV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R  +A    P++ +S   +L   +   + G DD + KP    E+LARV A+ RR +
Sbjct: 63  LEKMRSRKAGP--PVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  R +   + +    R      E   L  +E  ILEY+M N+G+ +++T I   ++ +
Sbjct: 121 PTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D     N+V+ +I  LR K+ ++     + + R +GY I+
Sbjct: 181 -DYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIE 220


>gi|304315710|ref|YP_003850855.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777212|gb|ADL67771.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 227

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +        +G +       +    L     E    I   L+  G   +
Sbjct: 7   IYIVDDDRNICEIISLYLEKEGFA--TVRIGDGVTALNKIKEELPLLIILDLMLPGIDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R  + VP+I ++        +   + G DD + KP   +E++ARV A+ RR + 
Sbjct: 65  TLCKEVRKFTDVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEH 124

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N         + +       + +GE   L  +E  +  +L  +  K   + Q+   ++
Sbjct: 125 EENDGDSVTYPDLSISLSEYKVKYKGENVDLTPKELELFYFLCTHPNKVFTRDQLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G ++   +   V+ HI +LR+K+ +   +    +   +GY  + 
Sbjct: 185 G-YEYMGDSRTVDVHIKRLREKIGDGPNWKL-TTVWGVGYKFEV 226


>gi|170016543|ref|YP_001727462.1| response regulator [Leuconostoc citreum KM20]
 gi|169803400|gb|ACA82018.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 235

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L +  + D+  ++  L       +
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYDVITAADGQEALALFNDEKPDLVLLDQMLPE--IDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR+ S+ P+I ++   S    +   + G DD V KP  +RE++ARV A  R  K 
Sbjct: 62  EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    V N     G + +          G+   L  RE  +L YL  + G+ + + 
Sbjct: 122 VSQHSEEATVHNEDIALGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 HLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230


>gi|20809033|ref|NP_624204.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517704|gb|AAM25808.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 231

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G     F + + EE ++ +  ++   I   ++       
Sbjct: 5   ILIVDDEKPLVDIIKYNLEKEGYI--TFEAYDGEEAVKMAKEQNPDLIILDVMLPKMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R    VP++ ++        +   + G DD + KP   RE++ARV A  RR+  
Sbjct: 63  TVLKTLRQSMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELVARVKANLRRVSF 122

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                N+      +++       E   +   L  RE  +L +L+ N+G   ++  +   +
Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 183 WG-YEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGYYF 225


>gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S]
          Length = 237

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVVDDEKTIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLP--GRDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++           E G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231


>gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus
           pseudintermedius ED99]
          Length = 233

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G+  +E
Sbjct: 6   VVVDDEKPIADILEFNLKKEGYEVFVAYDGNDAVDLIYEKEPDIVLLDIMLP--GQDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 64  VCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYTQ 123

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +  N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 124 PSQENHMQTNEITIKDIVIYPDAYSIKKRGEDIDLTHREFELFHYLSKHMGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     D + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPDYIVTRRGVGYFL 229


>gi|89098508|ref|ZP_01171391.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89086753|gb|EAR65871.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 223

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   + +       ++G  +    +          ++ D+  ++  +       L  
Sbjct: 2   IVDDDQHITELIEVYLKNEGYEVSKAGNGVEALNSFGKSQPDLIILDIMMPE--MDGLSF 59

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
              +R  SQVP++ +S        +    +G DD ++KP +  E+ ARV A+ RR   S 
Sbjct: 60  CTQVRKSSQVPILMVSAKVEDMDKIVGLMTGADDYMSKPFNPLELTARVKALLRRANYSQ 119

Query: 124 NR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + GP+ +         +G    L   E  IL  L  N+G+  +  +IF +++
Sbjct: 120 PEKGDAVLQIGPLAIDKQKHHVLAEGNSIKLTSIEFEILYLLARNQGRVFSSEEIFESVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
               E      V  HIS LR+KL   L G   + +   +GY I+
Sbjct: 180 NEPGE-GSNKTVMVHISNLREKLEAALPGEKIIHTVWGVGYKIE 222


>gi|227541629|ref|ZP_03971678.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182597|gb|EEI63569.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 227

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +    L   +G   +   + +    L    + D+  +   L+  G    +
Sbjct: 5   LIVEDELSLAEPLAFLLKKEGF--DAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R  S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRRLRQVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDS 122

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V++   E G + +  +     V G+   +P +E  +LEYL+ N G+ + + Q+   +
Sbjct: 123 DGSVADQILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEAEPSHPTQLVTVRGLGYKFE 226


>gi|288941366|ref|YP_003443606.1| two component transcriptional regulator PhoB, winged helix family
           [Allochromatium vinosum DSM 180]
 gi|288896738|gb|ADC62574.1| two component transcriptional regulator PhoB, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 228

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +++            +      +    L S+   D+  ++  L   G   L
Sbjct: 4   ILVIDDEPDIREVMRFALESSDFRVMEAGHADEARKLLSNETPDLILLDWMLP--GRSGL 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL + ++       +P+I IS     +  +   D+G DD + KP   RE++ARV A+ RR
Sbjct: 62  ELAQQLKQNPKTKSIPIIMISARGEEEDRVKGLDTGADDYIAKPFSPREMVARVKAVLRR 121

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K   + +  E G + + + G      G    +   E R+L + MA+  +  +++Q+   
Sbjct: 122 AKPDEATDEIEIGGLVMDNLGHRVTAGGRPIEVAPTEYRLLHFFMAHADRAFSRSQLLDQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ H+ +LRK L        + + R +GY  
Sbjct: 182 VWG-DQVYVEERTVDVHVRRLRKALEPTGHDRLLQTVRGVGYRF 224


>gi|323482861|ref|ZP_08088262.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum
           WAL-14163]
 gi|323691647|ref|ZP_08105909.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323403786|gb|EGA96083.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum
           WAL-14163]
 gi|323504281|gb|EGB20081.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 234

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG  +  + +   +  L    +E +  +   ++  G   L
Sbjct: 6   ILVVDDEKEIAELVEIYLVSDGYKV--YKADNAQAGLDILEKETIHLVLLDIMMPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  + +P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCKKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123

Query: 122 SN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N          N      + +  D     V GE   L   E  IL  L +N G+  +  
Sbjct: 124 LNPQSNVSSSAKNEISIKGLIINKDNHKVIVYGEEIKLTPIEFDILYLLASNPGRVFSTD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +IF  ++         N V  HI +LR K++        + +   +GY I+
Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIE 233


>gi|311741763|ref|ZP_07715574.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311314769|gb|EFQ84675.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 226

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D +   +    +   +G  +    +          A  D+  ++  L   G    E
Sbjct: 5   LVVEDESSYSEALSYVLRKEGFDVAIAETGPDALLEFDRAGADIVLLDLMLP--GLSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I +S   +    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRQTSSVPIIMVSAKDTEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGVAE 122

Query: 123 NNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++      E G +R+  D     V G    LP +E  +LE+ + N G+ + + Q+   ++
Sbjct: 123 DDVEGASLEAGRVRMDVDRHLVTVDGTETRLPLKEFELLEFFLRNPGRVLTRGQLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  D
Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEVDPANPVTLTTVRGLGYKFD 225


>gi|299143501|ref|ZP_07036581.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517986|gb|EFI41725.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 230

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        DG  +E   + + E+ L+     +   I   ++       
Sbjct: 5   ILVVDDEAAIAEIIEFNLKRDGFEVE--LAFDGEQCLEKVKDSNFDLIILDVMMPKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + R +R    +P+I ++        +   + G DD V KP   RE+ ARV AI RR   
Sbjct: 63  TVLRELRKTRHIPIIMLTAKEDEVDKILGLELGADDYVVKPFSMRELTARVKAILRRYDF 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +   E G + +     + + +G+V  L  RE  +L+YL ++ G+  ++ ++ 
Sbjct: 123 ETETPNSESKVIEAGDLIIDLTKYEIKKKGKVIDLTLREYELLKYLASSPGQVFSREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++  ++   +   V+  + +LR+K+ +K   F  + +KR +GY  
Sbjct: 183 DQVWD-YEYYGDIRTVDVTVRRLREKIEDKDKDFKYIMTKRGVGYYF 228


>gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 223

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++I+D   ++D       ++G  +    + +   E+  ++    +  ++  L        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNNDISIILLDIMLPD--ISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S+VP++ I+        L  F+ G DD V KP   +E++ARV AI  R   
Sbjct: 63  SLLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTSG 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   + E   I +    R   V GE   L  +E  +L+ L+ N+GK V++ +  + ++G
Sbjct: 123 ESEVEKTEYEGISINVSSRQVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 183 -YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 221


>gi|212709152|ref|ZP_03317280.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM
           30120]
 gi|212688064|gb|EEB47592.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM
           30120]
          Length = 229

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +   +G      +  +           D+  ++  + G  G +V
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQV 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +   A   VP++ ++     +  +   + G DD + KP   +E++ARV AI RR+ 
Sbjct: 65  IKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRIS 124

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +  E   + +               +   E ++L + M +  +  ++ Q+ + ++
Sbjct: 125 PMSTEDIIEMNGLVLDPTSHRVTSNEIPIDMGPTEYKLLHFFMTHPERVYSREQLLNYVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 185 GA-NVYVEDRTVDVHIRRLRKALELDGHDKMVQTVRGTGYRF 225


>gi|115526874|ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520821|gb|ABJ08805.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 234

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERTPDLVVLDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA  +    P+I ++        +    +G DD + KP    E+LARV  + RR
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +  D R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 235

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 104/229 (45%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +E   + +    L+ + ++D + I   L+      L
Sbjct: 5   IIVVDDELSIATLLKFNLEQAGFVVE--TAHDGMTGLKLAEKQDAALIVLDLMLPELDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R      P++ ++        +   + G DD + KP   RE++ARV AI RR+ 
Sbjct: 63  EVCKRLRQQKINTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRMN 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V++     G +++  D  +     E   L  +E  +L YL  N+G+ + + Q+
Sbjct: 123 QQTVAEEVTDGTILIGDVKIVPDNYEAFKAEERLELTPKEFELLVYLAKNKGRVLTRDQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            SAI+  +D   +  +V+ HIS +R+K+         + + R LGY ++
Sbjct: 183 LSAIWN-YDFVGDTRIVDVHISHVREKIEPNTKKPIYIKTIRGLGYKME 230


>gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2]
 gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2]
          Length = 240

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +      E         + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLKYNLERSGYHVVTAMDGEAGLLKAIEEKPDLIVLDLMLP--KMDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKELRQKKLMYPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRTQ 122

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             + + E            G +++  +  +   Q E   L  +E  +L YL  ++G+ + 
Sbjct: 123 TLSVQPEETEEPDAGELIIGELKILPEHYEVYFQNERLELTPKEFELLLYLGRHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +  + +A++  +D A +  +V+ HIS LR K+       + + + R LGY ++
Sbjct: 183 RDLLLNAVWN-YDFAGDTRIVDVHISHLRDKIEKNTKKPEYIKTIRGLGYKME 234


>gi|313496697|gb|ADR58063.1| DNA-binding response regulator CreB [Pseudomonas putida BIRD-1]
          Length = 255

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     DG S E           Q     D+  ++  L        
Sbjct: 33  ILIVEDEAAIADTLVYALQADGHSTEWVTLGSAALDQQRQRPADLVILDIGLPD--ISGF 90

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R +R  ++VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 91  ETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 150

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               A  T   ++ +       + +   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 151 RAEAAGGTSLFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLLDAL-GV 209

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYS 219
             +   E  ++SHI  LR KLR   G  +P+ + R LGYS
Sbjct: 210 ASDVGYERTIDSHIKSLRAKLRQVAGDAEPIQTHRGLGYS 249


>gi|225626512|ref|ZP_03784551.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ceti str. Cudo]
 gi|225618169|gb|EEH15212.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ceti str. Cudo]
          Length = 255

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 34  IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLP--GVSGI 91

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +     G DD V KP    E+LARV A+ RR
Sbjct: 92  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 151

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S  ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 152 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 211

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 212 VWGP-DIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYSF 254


>gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
 gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
          Length = 222

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G     F + + +E L+         I   ++  G+   
Sbjct: 4   ILIVDDDTHMRALVKTYAEIEGYLC--FEAADGKETLEKLTNHSFDLILLDVMMPGKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR     P+I I+        L  F+ G DD + KP   +E++AR+ A+ +R   
Sbjct: 62  QTLSEIRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +   G + V        + G   PL  +E  +L YL  N    +++  I   ++G 
Sbjct: 122 FQFEKIVFGDLEVNVFSHTVTINGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD   +   V++HI  LR++L +    + + +   +GY  D+
Sbjct: 181 FDYFGDTRTVDTHIKSLRERLGDY--RELIQTVWGVGYKFDY 220


>gi|254694764|ref|ZP_05156592.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 3 str. Tulya]
 gi|261215091|ref|ZP_05929372.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260916698|gb|EEX83559.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 228

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +         D+G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEDEGYQVDTMLRGDEAEIALRESVPDLLILDWMLP--GVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +     G DD V KP    E+LARV A+ RR
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S  ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 185 VWGP-DIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYSF 227


>gi|118595246|ref|ZP_01552593.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylophilales bacterium HTCC2181]
 gi|118441024|gb|EAV47651.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylophilales bacterium HTCC2181]
          Length = 231

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G +     S EF E +      D+  ++  L   G   +
Sbjct: 5   ILIVEDEESILELIAINLHQAGFNPIRSLSAEFAEKIIQKNLPDLIILDWMLP--GMDGV 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  + IR  S   ++P+I ++        L   + G DD + KP   +E++AR+ AI RR
Sbjct: 63  EFAKRIRGSSTTRKIPIIMLTAKSEEDNKLKGLNIGADDYMTKPFSPKELIARIKAILRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N       + +           ++  +   E ++L + M+N     ++ QI   
Sbjct: 123 NAPELVNEPINMNGLELDPIKYVLTNNDKIISIGPTEFKLLNFFMSNPNIAFSRNQILDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G     +++  V+ HI +LR  L++      + + R LGY ++
Sbjct: 183 VWGNK-SDIDDRTVDVHIKRLRDTLKHTGQHSLIKTVRGLGYRLE 226


>gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 248

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + ++ LQ  +  +V  +   ++      L
Sbjct: 22  ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDDALQMISTYEVDLMILDIMMPKRNGL 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 80  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 139

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 140 QNASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   + G   + +   +GY I+
Sbjct: 200 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIE 247


>gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis]
          Length = 233

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD   + D        +G  +  F + + EE L++    + D+  ++  L      
Sbjct: 4   ILVVDDEKPISDIVKFNLTKEGFEV--FTAFDGEEALEAFKEVQPDLILLDLMLP--KLD 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L++ R IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR+
Sbjct: 60  GLDVAREIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRI 119

Query: 120 KVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            V+   +          G +R+          G+   L  RE  +L YL  + G+ + + 
Sbjct: 120 NVAPAESTDNVKKELIIGNLRINPAHYAAYKNGKQLDLTHREFELLYYLAQHLGEVITRE 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +       V ++R +GY +
Sbjct: 180 NLLETVWG-YDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYM 228


>gi|229154965|ref|ZP_04283079.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228628523|gb|EEK85236.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 209

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 12/202 (5%)

Query: 28  GFNSLEFEEWLQS-----SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           G+   E E   ++     +   D   ++  +       L + + IR  S VP+I ++   
Sbjct: 13  GYEWGEAENGKEALKKLETNHYDFVVLDIMMPE--MDGLSVCKEIRKTSDVPIIFLTAKG 70

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDP 140
                ++    G DD + KP    E++AR+ A+ RR   +      + GPI +    R  
Sbjct: 71  EEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEIQFGPILINEKSRKI 130

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           E  GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A     V++H+  +R K
Sbjct: 131 EADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYAGSTRTVDTHVKTMRLK 189

Query: 201 LRNKLGFDPVDSKRFLGYSIDW 222
           L      + + +   +GY  + 
Sbjct: 190 LGESG--NYIQTVWGVGYKFEV 209


>gi|323491596|ref|ZP_08096775.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546]
 gi|323314172|gb|EGA67257.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546]
          Length = 229

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +++    +    G         +      S    D+  ++  L G  G   
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQTVEAEDYDTAVTKLSEPFPDLVLLDWMLPGGSGINF 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +       +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+ 
Sbjct: 65  IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +  +   +++           +   +   E ++L + M ++ +  ++ Q+ + ++
Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVMANDDALDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALETAGHDKLIQTVRGAGYRF 225


>gi|158321804|ref|YP_001514311.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158142003|gb|ABW20315.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 229

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G  +      E       +   D+  ++  L        
Sbjct: 5   ILIVEDEKPISDIVRFNLEKEGYKVLVAYDGEDGVNKALTLNPDLVLLDVMLP--KLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA S VP++ ++        +   + G DD + KP   RE+LARV A  RR + 
Sbjct: 63  QVCRKIRASSSVPILMLTAKEEEVDKVLGLEMGADDYITKPFGMRELLARVKANLRRTES 122

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +         TG I +     +      V  L  RE  +L++L     +   + Q+   
Sbjct: 123 GSGSNLEGIFTTGGIVIDFSKYEVRKNDTVIELTSREFELLKFLALQAEQVFTREQLLKQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+  + +LR+K+ +     + + +KR +GY  
Sbjct: 183 VWG-YEYYGDIRTVDVTVRRLREKVEDNSAEPEYIMTKRGVGYYF 226


>gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763]
 gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299]
 gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus 132]
 gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR
 gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR
 gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR
 gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR
 gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR
 gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR
 gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR
 gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR
 gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus]
 gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763]
 gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299]
 gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20]
 gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981]
 gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00]
 gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131]
 gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172]
 gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189]
 gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193]
          Length = 219

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++     + ++ L  +       I   L+      L
Sbjct: 4   ILIVEDEQNLARFLELELTHENYNVD--TEYDGQDGLDKALSHYYDLIILDLMLPSINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR + 
Sbjct: 62  EICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  +     V G    L + E  +L  L  N+   + + QI + ++G +
Sbjct: 121 QKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218


>gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 231

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G      ++           + D+  ++  L       +
Sbjct: 5   ILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQYREQQWDLILLDIMLPE--MSGI 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---R 117
           ++ + IRA  SQ P+I ++    ++  +   D G +D V KP    E+LAR+       +
Sbjct: 63  DVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALWFSQ 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++         G + +    R+     +   L  RE  +L YL+ +  + + + QI  A+
Sbjct: 123 KVSPKQVALSFGHLSINEQTREVVYFDKEIQLTPREYDLLFYLLKHPKQVLTREQILEAV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + NVV+ +I  +R+KL        + + R +GY +
Sbjct: 183 WG-YDYYGDTNVVDVYIRYVRQKLEAANPTPLIQTIRGVGYVL 224


>gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 92/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +   ++   + E    L    + ++  ++  +       +E
Sbjct: 7   LIADDEKEIRDLLKKYLEKEFYKVDVAGNGEEALHLFDDNKYNLIILDLMMPKV--DGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----- 117
           + R +R  + VP++ ++        +     G DD + KP    E++ARV A+ R     
Sbjct: 65  VCRRLRNKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRRFLVL 124

Query: 118 ---RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              R    N   +   I +          GE   L  +E ++L++   + G+   KTQ+F
Sbjct: 125 GSDRSSHENKLIKFKGISIDLKKCTVITAGEEVSLTAKEFQLLKFFATHPGQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +   ++N V  HI KLRKK+  +      + +   LGY  
Sbjct: 185 RNVWDG-NYPEDDNTVMVHIRKLRKKIEADPSNPQFILTVWGLGYKF 230


>gi|120611299|ref|YP_970977.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120589763|gb|ABM33203.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 235

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G         E  +    +   DV  ++  L   G+  L+
Sbjct: 8   LIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLP--GQSGLQ 65

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  RA      +P++ ++        +   D+G DD + KP   +E+LAR+ A+ RR 
Sbjct: 66  LARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + +      + + +       QG+   +   E ++L YLM +  +  ++ Q+   +
Sbjct: 126 APEQATDTVAISDLILDAGTYRVTYQGQQIKIGPTEFKLLHYLMKHPERVHSRAQLLDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGVAGA--MVETVRGAGYRL 225


>gi|298243521|ref|ZP_06967328.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556575|gb|EFH90439.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 240

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         D G              L +    D+  ++  L        
Sbjct: 5   ILIIEDEEGIIHLLNLYLKDAGYLTIAARDGADGLALHAREHPDLVVLDIMLPA--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA SQ P++ ++   +    ++  + G DD + KP   RE+++RV AI RR+  
Sbjct: 63  EVCRRIRAWSQTPILMLTARSAEDDRINGLELGADDYLLKPFSPRELVSRVRAILRRIPS 122

Query: 122 SNN--------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           S                      + V    R  EVQG    L   E  +L  +  +  + 
Sbjct: 123 SQEATPASKETKEDEKSVLRFPGLSVDLLARRVEVQGREVALTPTEFDLLALMAQSPDRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  + + ++G +D   + + ++ HIS LRKK+        + +   +GY  +
Sbjct: 183 FTREILMNKVWG-YDYLGDGHTIDVHISALRKKIEAGEQQRYIKTVWRVGYRFE 235


>gi|294635418|ref|ZP_06713908.1| phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda ATCC 23685]
 gi|291091207|gb|EFE23768.1| phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G       S +           D+  ++  L   G   +
Sbjct: 13  ILVVEDETPIREMVSFVLEQNGYQPLEAESYDGALSRLCEPYPDLILLDWMLP--GGSGI 70

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + ++   A   +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 71  QLIKHLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYIIKPFSPKELVARIKAVMRR 130

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 131 ISPMALEETITLQGLSLDPVSHRVMADEAPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 191 VWGT-NVYVEDRTVDVHIRRLRKALESSGHDRMVQTVRGTGYRF 233


>gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 229

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 11/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G +     +    + L    R     +   L+  G    +
Sbjct: 5   LIVEDEESFADPLAFMLRKEGFTTAV--AANGNDALSEFDRNGADIVLLDLMLPGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +R+ S VP+I ++   S    +   + G DD V KP   RE++ARV A+ RR    
Sbjct: 63  VCKALRSRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEA 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  N   E GP+R+  +     V G+  PLP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 TGETESGNGILEAGPVRMDVERHVVSVNGDDVPLPLKEFDLLEYLLRNVGRVLTRAQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
            ++G  D   +   ++ H+ +LR K+ +       + + R LGY  D 
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKVEDDPSTPKHLVTVRGLGYKFDV 229


>gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 231

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++  + + + +E LQ  +  +V  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNI--YKAYDGDEALQMISTYEVDLMILDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R ++ VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 63  EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N                 +       +V GE   L   E  IL  L +N G+  +  +I
Sbjct: 123 QNATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++   D       V  HIS LR KL   +     + +   +GY I+
Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNEEKFIHTVWGVGYKIE 230


>gi|253990976|ref|YP_003042332.1| phosphate regulon transcriptional regulatory protein phob
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782426|emb|CAQ85590.1| phosphate regulon transcriptional regulatory protein phob
           [Photorhabdus asymbiotica]
          Length = 229

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G         +      S    D+  ++  +   G   L
Sbjct: 5   ILVVEDETPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMIP--GGSGL 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + ++  + V   P++ ++     +  +   + G DD + KP   +E++ARV A+ RR
Sbjct: 63  QIIKQMKRDNNVRDIPVMMLTARGEEEDRVRGLEIGADDYITKPFSPKELVARVKAVLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +      N  E   + +         Q +V  +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMMIENLIEMDGLILDITSHRVTSQDQVLDMGPTEFKLLHFFMTHPERVYSREQLLNY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGA-NVYVEDRTVDVHIRRLRKVLEVGGHDKMVQTVRGTGYRF 225


>gi|188585611|ref|YP_001917156.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350298|gb|ACB84568.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 246

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 100/242 (41%), Gaps = 26/242 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +E     +           D+  ++  L   G   L
Sbjct: 4   ILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLP--GLDGL 61

Query: 62  ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-R 118
           E+ R IR +S   +P+I ++        +   + G DD V KP   RE+LARV A  R R
Sbjct: 62  EVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGR 121

Query: 119 LK-------------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
            K                    S +  + GP+ +  +     ++ +   L  +E  +L  
Sbjct: 122 TKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNI 181

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           ++ N G+ + + ++   I+G +D   +   V+ HI  LR+K+    G  D V++ R +GY
Sbjct: 182 MVTNSGQVLTREKLLEKIWG-YDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240

Query: 219 SI 220
            +
Sbjct: 241 RL 242


>gi|229917477|ref|YP_002886123.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229468906|gb|ACQ70678.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 236

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E         + D+  ++  L  K    +
Sbjct: 5   ILVVDDEQPIADILKFKLEKEGYQVHVAYDGEEALVKVEEIQPDLILLDIMLPLK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSSRELLARVKANMRRHAT 122

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + N    G + +  D      + E   L  RE  ++ YL  N G+ + +  
Sbjct: 123 APAPEAKGANANDIVIGDLTIHPDSYMVTKRDEKIELTHREFELIHYLAQNIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSTPTYIITRRGVGYYL 230


>gi|317122445|ref|YP_004102448.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592425|gb|ADU51721.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 258

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 15/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           +++DD A ++          G ++    +G ++L   + L    R  V+A+   L+  G 
Sbjct: 28  LVVDDEADIRRLLRLYLKRAGFAVVEAGDGVSALAAFDALVRQGRA-VAAVVLDLMLPGL 86

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+   +R  SQVP++ ++    +   L  F  G DD V KP   RE++AR+ A+ RR
Sbjct: 87  DGWEVCERLRERSQVPILMLTARGEIHERLHGFHLGADDYVVKPFDPREVVARIRALSRR 146

Query: 119 LKV---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       +      G + +    R   V G    L R E  +L  L  +RG+ ++
Sbjct: 147 AAPAPGGVRPAGAEPALHFGRLTIDPGARTVTVDGHPVSLTRTEFDLLYTLAQHRGQTLS 206

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + QI   + G  D   +E V++SHI  LR+KL        + +   +GY  +
Sbjct: 207 RQQILDRLRGG-DYFGDERVIDSHIRNLREKLEPFGLRKLIATVWGVGYRFE 257


>gi|317154759|ref|YP_004122807.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316945010|gb|ADU64061.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 228

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 94/226 (41%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++         G  +           L  + + D+  ++  +   G   L
Sbjct: 6   ILVVEDHKDTRELLKYNLTAAGFDVAAAEDGASGLALAEAFKPDIVLLDLMMP--GMDGL 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R I+ +S   ++P+I ++        +   + G DD + KP   RE++ R+ A+ RR
Sbjct: 64  EVCRQIKGNSSLSRIPVIMLTAKGEEIDKIVGLELGADDYIVKPFSPRELVLRIKAVLRR 123

Query: 119 LKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +A    E   +R+  +     V GE   L   E ++L  L++  GK   +  + 
Sbjct: 124 AGGREPKAPKAWEREGLRIDFEAHQITVDGEEATLTATEFKLLTVLISGSGKVQTRDNLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++           V++H+ +LR+KL      + +++ R +GY  
Sbjct: 184 DTVWDTH-FEGYSRTVDTHVRRLRQKLGPY--AEWIETVRGVGYRF 226


>gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 226

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +D     FG++G  +E  +      +  +    D   ++  L   G   L
Sbjct: 5   LLIVEDDEDTRDFIAKGFGEEGYVVETASDGREGLYHATDGGFDAVVLDRMLP--GLDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA   + P++ ++   ++   +    +G DD + KP   +E+ AR+ A+ RR +
Sbjct: 63  AVIKSMRAAGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQ 122

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S      +   + +    R     G    L  RE +ILE+ +  + + V++T +   ++
Sbjct: 123 ESEETPTLKCRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NVV+ HISKLRK+L    G   +++ R  GY +
Sbjct: 183 D-YHFDPNTNVVDVHISKLRKQLDEAGGPPLIETVRGAGYMV 223


>gi|323340909|ref|ZP_08081158.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091571|gb|EFZ34194.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 235

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E           D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYDVHTAYDGEEALKQVEEVSPDLIILDLMLP--KIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVAREVRKTHDMPIIMVTAKDAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQAA 121

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N           E G + +  +       GE   L  RE  +L YL  + G+ + +  
Sbjct: 122 VANATPEEEKSSDIEIGSLTIHPEAYVVSKNGEKIELTHREFELLYYLAKHIGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYL 229


>gi|227487201|ref|ZP_03917517.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092859|gb|EEI28171.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 227

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +    L   +G   +   + +    L    + D+  +   L+  G    +
Sbjct: 5   LIVEDELSLAEPLAFLLKKEGF--DAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R  S VP+I ++   +    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRRLRQVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDS 122

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V++   E G + +  +     V G+   +P +E  +LEYL+ N G+ + + Q+   +
Sbjct: 123 DGAVADQILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEAEPSHPTQLVTVRGLGYKFE 226


>gi|197303868|ref|ZP_03168903.1| hypothetical protein RUMLAC_02606 [Ruminococcus lactaris ATCC
           29176]
 gi|197297051|gb|EDY31616.1| hypothetical protein RUMLAC_02606 [Ruminococcus lactaris ATCC
           29176]
          Length = 223

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
           M   ++D   +++  I      G+  +GF          +    ++  ++  L G  G  
Sbjct: 1   MIYCVEDDDNIRELVIYTLETTGLKAKGFADGAAFMEALAFDTPELVLLDIMLPGDDGMV 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L+  +       +P+I ++   S    +   DSG DD V KP    E+++R+ A+ RR 
Sbjct: 61  LLKKLKSSSKTKDIPVIMVTAKGSEYDKVMGLDSGADDYVTKPFGMMELVSRIKAVLRRS 120

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    + E   I +     +  V G+   L  +E  +LE +M N+G  + + Q+ + I
Sbjct: 121 RKTEEKSQIELSGICMNIKKHEVTVNGKEVALTLKEFELLEKMMLNKGIVLTRDQLLTEI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   E   V+ H+  LR+KL  K   D + + R +GY +
Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGEKG--DLIQTVRGVGYRV 220


>gi|531494|emb|CAA56927.1| phoB [Shigella flexneri]
          Length = 229

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         +   + +           E   +   E ++L + M +     ++ Q+ + 
Sbjct: 123 ISPMAVEEVIKMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPELVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225


>gi|331001884|ref|ZP_08325405.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412207|gb|EGG91601.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 231

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG  ++          +      D+  ++  L       +E
Sbjct: 5   LVVDDEKLIVKGIKFSLEQDGYEVDTAYDGNEALKMAKEKEYDIVLLDVMLPE--MDGME 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + IR  S++P+I ++   +    +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQAIREFSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSKK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              ++ +    E   +R+  D R    + +   L  +E  ILE L  N  K  ++ ++ S
Sbjct: 123 AKAVEKNERVIEVSDLRLDLDSRRVFEKDKELNLTAKEFDILELLTQNPDKVYSREKLLS 182

Query: 176 AIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G    EA +   V+ H+ +LR+K+  N      + +K  +GY  
Sbjct: 183 IVWGNKLHEAGDVRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYF 229


>gi|295096819|emb|CBK85909.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 229

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + I+  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALELSGHDRMVQTVRGTGYRF 225


>gi|254479597|ref|ZP_05092907.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034471|gb|EEB75235.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 231

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G     F + + EE ++ +  ++   I   ++       
Sbjct: 5   ILIVDDEKPLVDIIKYNLEKEGYI--TFEAYDGEEAVKMAKEQNPDLIILDVMLPKMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R    VP++ ++        +   + G DD + KP   RE++ARV A  RR+  
Sbjct: 63  TVLKTLRQSMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELIARVKANLRRVSF 122

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                N+      +++       E   +   L  RE  +L +L+ N+G   ++  +   +
Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 183 WG-YEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGYYF 225


>gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 228

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G + E          L +    D+  ++  +       +
Sbjct: 4   ILIVDDEPRIRELIRENLQYSGYTCEEAGDGSAALSLLTGGGYDLVILDLMMPF--MDGM 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
              R +R      P+I ++        L   + G DD V KP   RE++ARV A+     
Sbjct: 62  SCLREMRTRRINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTM 121

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R + S++    G + + +     +V GE   L  +E  +L +L +N+G  +++ +I   
Sbjct: 122 PRTEASDSTMTFGELSIDTASHTVKVSGEEVSLTPKEFDLLVFLASNKGIALSREKILQK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   E+  V++H+  LR  L    G   + +   +GY  D
Sbjct: 182 VWN-YDYFGEDRTVDTHVKMLRGHLGKCRG--YIATVWGIGYKFD 223


>gi|269103311|ref|ZP_06156008.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163209|gb|EEZ41705.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 229

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G       + +++  L+         I    +  G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQP--IEAEDYDSALEKICEPYPELILMDWMLPGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + ++      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  NLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  ++  +   +++           E   +   E ++L + M ++ +  ++ Q+ + 
Sbjct: 123 VSPTALDDTIDVQGLKLDPVSHRVTSNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 183 IWGT-NVYVEDRTVDVHIRRLRKALEASGHEKLIQTVRGAGYRF 225


>gi|121608267|ref|YP_996074.1| two component transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121552907|gb|ABM57056.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 238

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G         E  +    +   +V  ++  L   G+  L 
Sbjct: 15  LIVEDEPAIAELIAINLRHNGFQPFWAEDGESAQRELDAVLPEVILLDWMLP--GQSGLS 72

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  RA S+   +P++ ++        +   D+G DD + KP   +E+LAR+ A+ RR 
Sbjct: 73  LARKWRADSRTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 132

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G +R+ +       QG+   +   E ++L +LM +  +  +++Q+   +
Sbjct: 133 APEQLSDSVHIGELRLDAATYRVTFQGQPLKVGPTEFKLLHFLMRHTERVHSRSQLLDKV 192

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 193 WGDH-VYIEERTVDVHVKRLREALGAA--SVMVETVRGAGYRL 232


>gi|148560182|ref|YP_001259941.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ovis ATCC 25840]
 gi|148371439|gb|ABQ61418.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ovis ATCC 25840]
          Length = 228

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLP--GVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +     G DD V KP    E+LARV A+ RR
Sbjct: 65  ELCRRLRQRPETGRLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S  ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 185 VWGP-DIYVDDRTVDVHVGRLRKAINVGRAADLIRTVRGAGYSF 227


>gi|251790686|ref|YP_003005407.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya zeae Ech1591]
 gi|307129884|ref|YP_003881900.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Dickeya dadantii 3937]
 gi|247539307|gb|ACT07928.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya zeae Ech1591]
 gi|306527413|gb|ADM97343.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Dickeya dadantii 3937]
          Length = 229

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    ++  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTRLAEPYPELVLLDWMLP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +         +     +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225


>gi|28210565|ref|NP_781509.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203002|gb|AAO35446.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 230

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 105/229 (45%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +++        +  ++  + +    E L    + D+      ++  G    
Sbjct: 3   ILIAEDEQDIRELLGLHLIKEDYNV--YEACNGIEALDVFNKNDIDLAILDIMMPGLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P+I I+     +  +     G DD + KP    E++ARV A++RR+  
Sbjct: 61  KVLKKIREKSNIPVIFITARGEDENKILGLGLGADDYIVKPFSPMEVVARVKALFRRVGT 120

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +       N+ E G + +  D       G    L  +E +I+E+LM N+G+   K QI+
Sbjct: 121 YSQNSSKDINKIENGELSLNKDSCTFYKNGNPIELNAKEYKIMEFLMENKGRVHTKKQIY 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSID 221
             ++G ++   + N +  HIS +R K+ +    +P+   + R +GY ++
Sbjct: 181 EKVWG-YEYYGDANTIMVHISHIRDKIEDNP-KEPIYLKTIRGIGYKLE 227


>gi|83747754|ref|ZP_00944788.1| PhoB [Ralstonia solanacearum UW551]
 gi|207724004|ref|YP_002254402.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum MolK2]
 gi|207742914|ref|YP_002259306.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum IPO1609]
 gi|83725526|gb|EAP72670.1| PhoB [Ralstonia solanacearum UW551]
 gi|206589212|emb|CAQ36174.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum MolK2]
 gi|206594309|emb|CAQ61236.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum IPO1609]
          Length = 237

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 97/233 (41%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       + E    L S    D+  ++  L   G+  +
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLP--GKSGV 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              + +RA+    Q+P+I ++     Q  +   D G DD V KP   +E+LAR+ A+ RR
Sbjct: 63  MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAK 170
              +++++      +R+                     L   E R+L +LM +  +  ++
Sbjct: 123 RAPQLTDDVVAINGLRLDPATHRVTALNSESENPIKLDLGPTEFRLLHFLMTHPERVHSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +Q+   ++G     VEE  V+ HI +LR  L        +++ R  GY +  N
Sbjct: 183 SQLLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSTMIETVRGSGYRLARN 234


>gi|262275301|ref|ZP_06053111.1| probable two-component response regulator protein [Grimontia
           hollisae CIP 101886]
 gi|262220546|gb|EEY71861.1| probable two-component response regulator protein [Grimontia
           hollisae CIP 101886]
          Length = 231

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         + G  +E  ++ +    L  +   DV+ ++  L   G   L 
Sbjct: 4   LLVEDDVSLSSFVEKGLREAGHQVEVTDNGKHALTLCMAENYDVAIVDRMLP--GLDGLS 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           L + +RA     P++ ++    +   ++  ++G DD + KP    E+LARV A+ RR   
Sbjct: 62  LVKALRAAQVGTPILFLTALGGVDDRVEGLEAGGDDYLTKPFAFSELLARVTALSRRAVL 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      G + +         +G+   L  +E RILE  + + G+ + +T +   +
Sbjct: 122 KTTEAMPEISYGDVVLNLFEHSATRRGQPLDLQPKEFRILELFLRHPGRVITRTMLLEHV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +     + +VVE+HIS+LR KL    G   + + R +GY ++
Sbjct: 182 WDIH-FDPQTSVVETHISRLRNKLEKPFGDTLIQTVRGVGYKLE 224


>gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 224

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +   +       L   A+ D++ ++  L   G   +
Sbjct: 5   ILLVEDEVKLARFIQLELDSEGYRVTVAHDGMSGLSLAREAQPDLAILDWMLP--GLTGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +RA    +P+I ++    +   +   D+G DD V KP    E+LAR+ A  RR +
Sbjct: 63  ELCRRLRATGNKIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHLRRTQ 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V  +  +   + +    R+         L  +E  +LEYL++N  +   + QI   ++G
Sbjct: 123 EVDEDILQFEDLSLNRRTREVRRGQRSIELTAKEFDLLEYLLSNPRQVYTRDQILEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL  +     + + R +GY++
Sbjct: 183 -YDFMGDSNIIEVYVRYLRLKLEEQGEKRLIHTVRGVGYAL 222


>gi|39937833|ref|NP_950109.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|192293618|ref|YP_001994223.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39651693|emb|CAE30215.1| two-component phosphate transcriptional regulator PhoB
           [Rhodopseudomonas palustris CGA009]
 gi|192287367|gb|ACF03748.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 237

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLESEGYEVETVARGDDADTRMKERIPDLVVLDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA  +    P+I ++        +    +G DD + KP    E+LARV  + RR
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +  D R     G    L   E R+LE+ + + G+  ++ Q+   
Sbjct: 123 AAPERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNIGREQDPIRTVRGAGYALD 226


>gi|315658044|ref|ZP_07910917.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315496934|gb|EFU85256.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 249

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 100/231 (43%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +E     E         + D+  ++  L  K    +
Sbjct: 18  ILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVMLPKK--DGI 75

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 76  EVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQ 135

Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             N  A             IR+  +  +     E+  L  +E  +L YL+  +G+ + + 
Sbjct: 136 FVNEAANDAANEEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITRE 195

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            + ++++  ++ A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 196 HMLNSVWN-YEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 245


>gi|295425531|ref|ZP_06818222.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064784|gb|EFG55701.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 265

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 103/231 (44%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++   + + EE +Q     D   +   L+   +  L
Sbjct: 32  ILVVDDEKPISDIIKFNLTKEGFDVD--TAYDGEEAVQKVEEYDPDLMILDLMLPKKDGL 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 90  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 149

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    + ++   + G + +  D    E  G+   L  RE  +L YL  + G+ + +
Sbjct: 150 VKKAEAATQEEADKNIKIGNLVIMPDAYIVENNGKKIELTHREFELLYYLAQHMGQVMTR 209

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  + +LR+K+ +  +    + ++R +GY +
Sbjct: 210 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILITRRGVGYYV 259


>gi|27376207|ref|NP_767736.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
 gi|2769532|emb|CAA11074.1| phosphate regulatory protein [Bradyrhizobium japonicum]
 gi|27349347|dbj|BAC46361.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
          Length = 235

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        DG  +E     +  +        D+  ++  L   G   +
Sbjct: 5   IMVVEDEEALTELLRYNLEGDGYDVETVMRGDDADTRLKEHIPDLIVLDWMLP--GLSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R      Q+P+I ++        +    +G DD + KP    E+LARV  + RR
Sbjct: 63  ELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G I +  D R     G    L   E R+LE+ + + G+  ++ Q+  +
Sbjct: 123 ASPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNLGREQDPIRTVRGAGYALD 226


>gi|312197966|ref|YP_004018027.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229302|gb|ADP82157.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 233

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D         G  ++            ++ R D+  ++  L   G   LE
Sbjct: 5   LIVDDDPTVADVLSRYLQRAGYEVDLAADGHAALATAAATRPDLVVLDLMLP--GLNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R    VP++ ++   +    +   + G DD V KP   RE+  RV ++ RR    
Sbjct: 63  VCRRLRETGSVPVVMLTALGAEHDRIVGLEHGADDYVTKPFSPRELTLRVQSVLRRAAGP 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    + GP  V    R+   +     L  RE  +L YL+ +  +  ++ ++  A+
Sbjct: 123 PTSTAGGVIDVGPFTVDLPAREVRGENGTISLTVREFDLLAYLVRHPRRAFSRPELMEAV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
           +G      +++ V  HI +LR+KL        +  +   +GY  +
Sbjct: 183 WGW--SYGDQSTVTVHIRRLREKLEADPSSPSILVTVWGVGYRYE 225


>gi|296332246|ref|ZP_06874708.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674948|ref|YP_003866620.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150560|gb|EFG91447.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413192|gb|ADM38311.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 240

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +   ++   + +        A  D+  ++  +   G   +
Sbjct: 9   ILVVDDEARIRRLLRMYLERENYVIDEAENGDEAIAKGLEANYDLILLDLMMP--GTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 67  EVCRQVREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++         N      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 127 TSYLNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237


>gi|119476351|ref|ZP_01616702.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2143]
 gi|119450215|gb|EAW31450.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2143]
          Length = 236

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G +            + + ++ D+  ++  L   G   +
Sbjct: 6   ILIVDDEAPIREMIRMSLDMAGFNCREAADTREAYRVIADSKPDLVLLDWMLP--GGSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R     + +P+I ++        +   D G DD + KP   RE+L+R+ A+ RR
Sbjct: 64  ELLRRLRKEELTADLPVIMLTAKTDEDNKIQGLDVGADDYITKPFAPREMLSRIKALLRR 123

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +  +  E   +++        +      +   E R+L + M ++ +  ++ Q+   
Sbjct: 124 TSTGIGGSVIEVQGLKLDISSHRVYIDTRPVDMGPTEFRLLSFFMTHQERAYSRGQLLDH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L ++ G   + V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALESEGGCYNECVQTVRGTGYRF 228


>gi|296446454|ref|ZP_06888398.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296256089|gb|EFH03172.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 247

 Score =  242 bits (620), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G  +E     +  E   S +  D+  ++  L   G   L
Sbjct: 20  ILVVEDEAALALLLAYNLESEGFQVEHVERGDEAEIRLSESLPDLVILDWMLP--GVSGL 77

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +RA       P+I ++        +     G DD V KP    E++ARV A+ RR
Sbjct: 78  EICRRLRARDDTRTMPVIMLTARGDENERVRGLSVGADDYVVKPFSTPELMARVHALLRR 137

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +      R   G I +  + R  +  G    L   E R+LEYLM   G+  ++ Q+  +
Sbjct: 138 ARPERVATRLVAGDIDLDRETRRVKRAGREIHLGPTEFRLLEYLMEKPGRVFSRAQLLDS 197

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++GL  E ++E  V+ H+ +LRK +      DP+ + R  GYS D
Sbjct: 198 VWGLSAE-IDERTVDVHVGRLRKAIIRGREKDPIRTVRGTGYSFD 241


>gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 230

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G ++    + +    L+ +   D   +   ++  G    
Sbjct: 6   ILIIEDEKHIARFLQLEFEHEGYTVTV--TYDGLSGLKEALEGDYDLVLLDIMLPGIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR HS +P+I ++    ++  ++  D G DD V KP    E+ ARV A  R+ K 
Sbjct: 64  EVLKKIREHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 123

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      I +     +    G    L ++E  +LE+L+ N    + + +I   ++G
Sbjct: 124 HLKKDVLRYSDITMDLTTHEVRRAGIKIELTKKEFDLLEFLIKNANIALTREKILECVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   + N+V+ +I  LR K+ +      + + R +GY++  +
Sbjct: 184 -YDYYGDTNIVDVYIRYLRSKIDDPFDRKLIHTIRGVGYTLKED 226


>gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 230

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L+   R     +   L+  G    E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVAV--AATGPDALEQFERNGADLVLLDLMLPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRVRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVLRRRGED 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+ 
Sbjct: 123 GGADGAAAPGALEAGPVRMDVDRHVVTVDGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 DRVWGA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 229


>gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 242

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +           L      D+  ++  L        
Sbjct: 12  LLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLARDVEPDLVVLDVMLPD--MDGF 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   Q VP++ ++        +     G DD V KP    E++AR+ AI RR  
Sbjct: 70  TVTRRLREKGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTS 129

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S++      + +  D  +    G    L   E ++L YL+ N G+ ++K QI   
Sbjct: 130 AGLDDSSSVLRYADLELDEDSHEVTRAGHAVELSPTEFKLLRYLILNPGRVLSKAQILDH 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           ++  +D   + N+VES+IS LR+K+      D       + +KR +GY +
Sbjct: 190 VW-QYDWGGDANIVESYISYLRRKIDQLADADGNRLPPLIHTKRGVGYLL 238


>gi|223043432|ref|ZP_03613478.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|222443221|gb|EEE49320.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
          Length = 233

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 6   VVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLP--GRDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 64  VCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +  + N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 124 PAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229


>gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 233

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 106/233 (45%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++  + D+  ++  L       
Sbjct: 4   ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEA-EQPDILILDLMLPEV--DG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A+ RR +
Sbjct: 61  LDVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRRSE 120

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +         S      G +++  D    +  G+   L  RE  +L +L  + G+ + + 
Sbjct: 121 LIPDSHVDESSPKELFIGDLQILPDAFVVKKHGKELELTHREFELLHHLATHVGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY I  N
Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYIRNN 232


>gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
 gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
          Length = 229

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +      E           D+  ++  L       +
Sbjct: 5   ILVMEDEDALATLLQYNLEKEGYDVAVAADGEEGMLQIDERTPDLILLDWMLP--KLSGI 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R       +P+I ++        +   D+G DD + KP    E+ AR+ A+ RR
Sbjct: 63  EVCRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVLRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++   +++R     I +          G    L   E R+L++ + + G+  ++ Q+  A
Sbjct: 123 IRPGLADDRVNHADIIMDRVAHRVSRAGREVHLGPTEFRLLDHFLKHPGRVFSREQLLDA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G  D  VE   V+ H+ +LRK L  +   +P+ + R  GYS+D N
Sbjct: 183 VWG-SDVYVEARTVDVHVGRLRKALNVEGTVNPIRTVRSAGYSLDLN 228


>gi|225567872|ref|ZP_03776897.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
           15053]
 gi|225163350|gb|EEG75969.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  242 bits (619), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L      D+  ++  L        +
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLSRENAYDMILLDVMLP--KYDGFQ 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIREFSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSKR 123

Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +++           +++  + R   ++ +   L  +E  +LE L  N  K  ++  + + 
Sbjct: 124 DSKTVNDKVIIKREMKIDCESRRVFIEEKEINLTAKEFDLLELLAMNPNKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIEKNPSDPKYVYTKWGVGYYF 227


>gi|330718004|ref|ZP_08312604.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 235

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L S    D+  ++  L       +
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYDVITAADGKEALSLYSDESPDLVLLDQMLPEV--DGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR++   P+I ++   S    +   + G DD V KP  +RE++ARV A  RR KV
Sbjct: 62  EVLRQIRSNDDTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQKV 121

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     S    E G + +          G    L  RE  +L YL  + G+ + + 
Sbjct: 122 TVQNTDAVVDSTEDIELGDLTIHPQAYMVSKNGVDIELTHREFELLYYLAQHIGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 HLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230


>gi|227889097|ref|ZP_04006902.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|268318621|ref|YP_003292277.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|227850326|gb|EEJ60412.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|262396996|emb|CAX66010.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 235

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 101/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++   + + EE ++     D   +   L+   +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVD--TAYDGEEAVKKVEEYDPDLMILDLMLPKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    E         G + +  +    E  GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 TQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +      +  ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYV 229


>gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
 gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
 gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
 gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
 gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
 gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
 gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
 gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
 gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
 gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 233

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++  + D+  ++  L       
Sbjct: 4   ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEA-EQPDILILDLMLPEV--DG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ R IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRAD 120

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +   N    G +++  D    +  G+   L  RE  +L +L  + G+ + + 
Sbjct: 121 LVVENQVEESGPNELTIGELQILPDAFVAKKHGKELELTHREFELLHHLATHIGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232


>gi|90426389|ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108403|gb|ABD90440.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 234

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  +        D+  ++  L   G   +
Sbjct: 5   ILVVEDEEALTTLLRYNLDAEGYDVETVARGDDADTRLKERIPDLVVLDWMLP--GLSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA  +    P+I ++        +    +G DD + KP    E+LARV  + RR
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G I +  D R     G    L   E R+LE+ + + G+  ++ Q+  +
Sbjct: 123 ASPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  ++E  V+ HI +LRK L      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226


>gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597]
 gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564]
 gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564]
 gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597]
          Length = 235

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E  ++  + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 121 VSN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +++              + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LASVDNQESDENKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|228991458|ref|ZP_04151410.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
 gi|228768260|gb|EEM16871.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
          Length = 231

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G S+  + + + +E L   +   +  +   ++      L
Sbjct: 6   ILIIDDDKEIVELLAVYLRNEGYSI--YKAYDGDEALHMLSLYQIDLMILDIMMPKRNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  + VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 64  EVCQQVREENTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSF 123

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +       + +       +V GE   L   E  IL  L +N G+  +  +IF
Sbjct: 124 QQVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   D       V  HIS LR+KL     G   + +   +GY I+
Sbjct: 184 ERVWNE-DGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIE 230


>gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 234

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 108/229 (47%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G   E   +   E+ L+  A      I   L+  G+    
Sbjct: 6   LIVEDEQPIADIINFNLVKEGYETEV--AYNGEDGLEKFASFSPHIIVLDLMLPGKDGFS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR+ S VP++ ++   S    +   + G DD V KP  +RE+LAR+ A+ RR+ +S
Sbjct: 64  VCKEIRSQSSVPILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALLRRVNLS 123

Query: 123 ----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  +   + +     + + QG+   L  RE ++  YL+  +G+ +++ +
Sbjct: 124 GQDSSSSEKDEDILKYNDVEINLKTAEVKKQGQAIDLTYREFQLFVYLVKRQGEVISRER 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +   ++G +D   E+  V+  I +LR+KL +  G    + +KR +GY +
Sbjct: 184 MIEEVWG-YDFIGEDRTVDVTIRRLREKLEDDPGSPSYIMTKRGMGYYL 231


>gi|295696419|ref|YP_003589657.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412021|gb|ADG06513.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 233

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E          +  +    V  ++  L        
Sbjct: 6   ILVVDDEERIRRLVRMYLERNGFEVEEAEDGRTALEMALANDYAVIVLDLMLPE--LDGR 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R     P+I ++        +  F+ G DD V KP   RE++ RV A+ +R+  
Sbjct: 64  EVCAQLRKQKDTPVIMLTAAGDEMNRIHGFELGADDYVVKPFSPRELVMRVKALIKRVHQ 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E         + +  + R     G+   L  +E  +L YL     K   + ++  
Sbjct: 124 GPAEHELTQVFTFPHLTINLESRKVTADGQDVSLTPKEYELLCYLAQRPEKVFTREELLR 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSIDW 222
            ++  +    ++  V++HI +LR+KL          + +   +GY  + 
Sbjct: 184 DVWN-YQFYGDQRTVDTHIKRLREKLGKASQPAAAMIVTVWGVGYKFEV 231


>gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L+DD   +          +G  ++          +   +  D+  ++  L       
Sbjct: 5   LILLVDDEPSIVSLCRMYLEREGFRVQSAGDGVTALEMLKKSPPDLMILDVMLPE--LDG 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ + +RA +  +P++ ++        +   + G DD + KP + RE++ARV AI RR 
Sbjct: 63  FEVCKQLRAQNDPLPILMLTARDEDYDKILGLELGADDYMTKPFNPRELVARVKAILRRT 122

Query: 120 KVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +       N    G I V     +      + PL  +E  +L  L  N G+ +++ Q+  
Sbjct: 123 RHQTHEDQNVIRIGNIVVDPARYEVRNGDYLIPLRAQEFEVLCVLARNAGRVLSREQLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +G FD   +   V+ HI++LR+KL +      +++   +GY +
Sbjct: 183 KAWG-FDFYGQTRTVDVHIAQLRRKLADSG--VTIETVTGVGYKL 224


>gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family
           [Bacillus pseudofirmus OF4]
          Length = 229

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G  ++   ++   E L+   +   S +   ++       
Sbjct: 6   ILIVEDEAPMRELLQLYLRKEGYVVD--EAITGIEALEKVEKTLYSVVLLDVMMPEMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQVP+I ++        +     G DD + KP    E+LARV A+ RR  V
Sbjct: 64  EVCREIRKVSQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAVLRRYGV 123

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S      N      + +  +        E   L  +E  ILE  + N+ +  ++  I   
Sbjct: 124 SEPESRGNTLFFKGLVMKRNAYQVYYNEEELSLTPKEFAILELFLLNKNRVFSRDDILEL 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSI 220
           ++G +D   +   V++H+  LR KL      G   + +   +GY +
Sbjct: 184 VWG-YDFIGDYRGVDTHVKHLRDKLTEAGISGRSVIKTVWGVGYKL 228


>gi|150395502|ref|YP_001325969.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027017|gb|ABR59134.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 223

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 153/223 (68%), Positives = 181/223 (81%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+RALVKDGY +LFG +G+   GF+  EF EW+ ++A  D+ A+EAFLIG+G+  
Sbjct: 1   MIVVVDERALVKDGYASLFGREGIPSSGFDPKEFGEWVSTAADSDIDAVEAFLIGQGDSA 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L LPR IR  S+ P+I +SD PSL+ TL  FD GVDDVV KP+H REILARVAAI RRL 
Sbjct: 61  LSLPRAIRDRSRAPVIAMSDTPSLENTLALFDCGVDDVVRKPVHPREILARVAAIRRRLT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N  + GPIRVF+DGRDPE+ GEVF LPRRERRILEYL+ANRG+RV+K QIF+AIYG+
Sbjct: 121 AIANFTDIGPIRVFADGRDPEINGEVFALPRRERRILEYLVANRGRRVSKAQIFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FDE VEENVVESHISKLRKKLR KLGFDP+DSKRFLGY IDWN
Sbjct: 181 FDEDVEENVVESHISKLRKKLRKKLGFDPIDSKRFLGYCIDWN 223


>gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 235

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 106/235 (45%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E L  + + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIE-LFEAEQPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 121 VSN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +++              + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LASVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNN 234


>gi|288906147|ref|YP_003431369.1| phosphate regulon response regulator PhoB [Streptococcus
           gallolyticus UCN34]
 gi|306832192|ref|ZP_07465346.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|288732873|emb|CBI14452.1| phosphate regulon response regulator PhoB [Streptococcus
           gallolyticus UCN34]
 gi|304425631|gb|EFM28749.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 225

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 96/224 (42%), Gaps = 6/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  +      G   +GF + E       S + D+  ++  L G  G  
Sbjct: 1   MIYCVEDDDDIRELMLYTLKTTGFVAQGFPNAELFWQAIESQKPDLILLDIMLPGSDGLS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +LE  +   + + +P+I  +   +    +   D G DD + KP    E+++R+ A+ RR 
Sbjct: 61  ILEELKGKMSTADIPVIMATAKGTEFDKVKGLDMGSDDYLVKPFGMMEMISRIKAVLRRS 120

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S      + G + +       +  G+   L  +E  +L  LM    +   + ++ + +
Sbjct: 121 QKSQRKQILQVGNLSLDIQNYTVKKDGKDISLTLKEFELLGLLMKYPNRVFTRQELLNQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +    E   V+ HI  LR KL +      + + R +GY ++
Sbjct: 181 WGEY-FVGETRTVDVHIGTLRTKLGDASH--LIKTIRGVGYRLE 221


>gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 237

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +   +S      +  + + D+  ++  +   G     
Sbjct: 14  LVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRTVKPDLLILDVMMP--GMDGFT 71

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R   + VP++ ++   +++  +     G DD V KP    E++ARV AI RR   
Sbjct: 72  LLRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRRSGQ 131

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  R   G + +  D       G    L   E ++L YLM N  K V+K QI   ++
Sbjct: 132 GTGAPTRIVVGDLVLDEDAHQVLRAGHEIELTATEFKLLRYLMLNANKVVSKAQILDHVW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE++IS LRKKL +  G   + + R +GYS+
Sbjct: 192 -QYDFGGDANIVETYISYLRKKL-DGYGPPMIKTVRGVGYSL 231


>gi|255024215|ref|ZP_05296201.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           J1-208]
          Length = 228

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLMLPN--MDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 122 SNN------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
           ++N        ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 TSNAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATET-KPFLHTVWGVGYKFD 225


>gi|296134131|ref|YP_003641378.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032709|gb|ADG83477.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 224

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            ++ DD A ++         +G ++     +E  +  Q+        D+  I   ++  G
Sbjct: 6   ILIADDEARMRKLVADFLKKEGYAI-----IEAADGRQALDLFYGNNDIDLIILDVMMPG 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
                + R IR  SQVP+I ++        L  FD G D+ + KP   + + AR+ A+ R
Sbjct: 61  YDGWTVCREIRKSSQVPIIMLTARGEESDELFGFDLGADEYIAKPFSLKILAARIQALLR 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R++ +        + +   GR   V GE   L  +E  +L YL  N G+ +++ QI +A+
Sbjct: 121 RVQNNRTVRSFDGLEIDEQGRYVYVDGEPVDLSPKEFELLLYLTENAGRALSREQILNAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +  +D   +   V++HI KLR KL  K     + + R LGY  + 
Sbjct: 181 WD-YDYFGDVRTVDTHIKKLRLKLGEKSY--LIQTVRGLGYRFEV 222


>gi|261340989|ref|ZP_05968847.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cancerogenus ATCC 35316]
 gi|288316853|gb|EFC55791.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cancerogenus ATCC 35316]
          Length = 229

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 98/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G     F  +E E++  +  +      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNG-----FQPIEAEDYDSAVNQLNEPWPDLILLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   L+  + I+  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ 
Sbjct: 58  GGSGLQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +               +   E ++L + M +  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 178 QLLNNVWGT-NVYVEDRTVDVHIRRLRKALELSGHDRMVQTVRGTGYRF 225


>gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1]
 gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE LQ   +  V  I   L+      +
Sbjct: 6   ILIVDDEKEIRNLISIYLKNEGFQV--LEACDGEEGLQLVKKHKVHLIVLDLMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++   +R  +++P+I ++        +     G DD V KP +  E++AR+ +  RR   
Sbjct: 64  KMCMKVREVAEMPIIMLTAKSQDMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRRYLK 123

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +    E G +R+ +   +  V  E   L  RE  ILE L++N G  ++  QI+
Sbjct: 124 MSGLHSSNKEELEVGDLRINTATHEVFVNNERVKLTPREFAILELLVSNPGIVMSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++   +    EN V  HI K+R+++  N      + +   +GY ++
Sbjct: 184 EKVW-KEEAFQSENTVMVHIRKIRERIETNSRNPQYIKTVWGVGYKVE 230


>gi|215425719|ref|ZP_03423638.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           T92]
          Length = 210

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 11/211 (5%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
           L   +G                  A  D+  ++  L   G    ++ + +RA S VP+I 
Sbjct: 3   LLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLP--GMSGTDVCKQLRARSSVPVIM 60

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIR 132
           ++   S    +   + G DD V KP   RE++AR+ A+ RR      ++S+   E+GP+R
Sbjct: 61  VTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVR 120

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  +     V G+   LP +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ 
Sbjct: 121 MDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGA-DYVGDTKTLDV 179

Query: 193 HISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           H+ +LR K+      +PV   + R LGY ++
Sbjct: 180 HVKRLRSKIEADPA-NPVHLVTVRGLGYKLE 209


>gi|195978501|ref|YP_002123745.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225870885|ref|YP_002746832.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975206|gb|ACG62732.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700289|emb|CAW94550.1| response regulator protein [Streptococcus equi subsp. equi 4047]
          Length = 236

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 18/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  ++  F+  E    +    + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEA-VAVFEEEKPDLIILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 V------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                         +     G +++  D    +  G+   L  RE  +L +L  + G+ +
Sbjct: 121 TIETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 231

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G   +  ++ E    L +    D+  ++  L   G    
Sbjct: 8   ILVVDDEPSITEFVSYALKKEGFFTDVVDNGEDALALATKNSYDLFVLDIMLP--GMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R +R+ + VP++ +S   +    +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 66  ELCRRLRSKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +N+      I +  D            L  RE  +L  LM N GK V++  +   
Sbjct: 126 GDFPGANHAVTASGITLDEDAHTASGANGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            +G ++   E   V++HI +LR K+ +  G+DP  V++ R  GY  
Sbjct: 186 AWG-WEYLTETKTVDTHIKRLRDKIESA-GYDPGLVETVRGYGYRF 229


>gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 233

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 104/232 (44%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    +  +   D+  ++  L       L
Sbjct: 4   ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAESPDILILDLMLPE--IDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  S VP+I +S   +    +   + G DD V KP  +RE+ ARV A+ RR + 
Sbjct: 62  EVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRTEL 121

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S++    G +++  D    + +G+   L  RE  +L +L  + G+ + +  
Sbjct: 122 TVESQTESTSDSDIVIGDLKIIPDTFLAQKKGKELELTHREFELLYHLATHVGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  I +LR+K+ +  G  + + ++R +GY +  N
Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDIPGRPEYILTRRGVGYYMRNN 232


>gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 227

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D    L   +G  +      +  + ++         I   L+  G    
Sbjct: 4   ILLVEDEESLSDPLSYLLEREGYDVSIAE--DGLKAVEMFELHGADIILLDLMLPGLPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA S VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCRAIRAKSMVPIIMLTAKDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRGQA 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + S+N  E G +RV  D     V+GE   LP +E  +LE L+ N G+ + + Q+   
Sbjct: 122 QGSEGSSNVLEAGGVRVDVDRYVVTVRGEDMQLPLKEFELLEMLVRNAGRVMTREQLIDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++G  D   +   ++ H+ +LR K+       + + + R LGY  +
Sbjct: 182 VWG-SDYVGDTKTLDVHVKRLRTKIEENPSKPELLVTLRGLGYKFN 226


>gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 229

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 101/224 (45%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G ++    + +    L+ +   D   +   ++  G    
Sbjct: 5   ILIIEDEKHIARFLQLEFEHEGYTVTV--TYDGVSGLKEALEGDYDLVLLDIMLPGIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR HS +P+I ++    ++  ++  D G DD V KP    E+ ARV A  R+ K 
Sbjct: 63  EVLKKIREHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 122

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  +   I +     +    G    L ++E  +LEYL+ N    + + +I   ++G
Sbjct: 123 HLKKDVLKYSDIIMDLTTHEVRRAGIKIELTKKEFDLLEYLIKNANIALTREKILEGVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   + N+V+ +I  LR K+ +      + + R +GY++  +
Sbjct: 183 -YDYYGDTNIVDVYIRYLRSKIDDPFDRKLIHTIRGVGYTLKED 225


>gi|258513815|ref|YP_003190037.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777520|gb|ACV61414.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 235

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++   +  F + +       + R D++ ++  L        
Sbjct: 8   ILIADDEQAIADLVAVYLENENYHVFKFYNGKDTLNCVENERLDLAILDVMLPD--MDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 66  SICQQIREKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTK 125

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N+              + +     +  +  +   L   E  IL  L +NRG+ V+  ++
Sbjct: 126 YNSAEPNQEEHLIAFSGLVLDKKTHECTLNEKRLSLTPTEFSILWVLCSNRGRVVSSEEL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           F  ++G        N V  HI  LR+K+ +       + +   +GY I+
Sbjct: 186 FHEVWGDKYFTNSNNTVMVHIRHLREKMHDSAEHPKYIKTVWGVGYKIE 234


>gi|306416863|gb|ADM87277.1| two-component system response regulator [Streptomyces subtropicus]
          Length = 267

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +  +      G ++E  +         ++ R D+  ++  L        E
Sbjct: 21  LVVDDDPTVAEVVVGYLHRAGYAVEQADDGPAALGRFAAHRPDLVVLDLMLPA--MDGFE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R H  VP+I ++     +  +   ++G DD V KP   RE++ RV ++ RR +  
Sbjct: 79  VCRRMREHGPVPVIMLTARGDEEDRILGLETGADDYVTKPFSPRELVLRVDSVLRRARAA 138

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +    R     G    L  RE  +L +L+ + G+   + ++   +
Sbjct: 139 APADGTGPLSGGGLSLDPASRQASRDGHGLALTLREFDLLAFLLRHPGRAFGREELMREV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G   +  + + V  HI +LR K+ +       + +   +GY +D
Sbjct: 199 WGW--DFGDLSTVTVHIRRLRGKVEDDPARPRLIRTVWGVGYRLD 241


>gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L      DV  ++  L        E
Sbjct: 5   LVVDDEKLIVKGMRFSLEQDGMEVDCAYDGEEAINLAKQKEYDVVLLDVMLP--KYDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S++P+I ++   +    +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQAIREFSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNSKK 122

Query: 123 NNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           N R           G +++  D R   +  +   L  +E  +LE L  N GK  ++ Q+ 
Sbjct: 123 NKRDSQDDSQVVIAGDLKLDRDSRRVFIAEKEINLTAKEFDLLELLTCNPGKVYSREQLL 182

Query: 175 SAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G    +  +   V+ H+ +LR+K+  +      V +K  +GY  
Sbjct: 183 TYVWGNKAMDTGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 230


>gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 235

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 97/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G  ++             + R D+  ++  L   G   L
Sbjct: 4   ILIVDDEHHIIELVRFVLQKEGFDVKVAQDGLTAIKETENYRPDLILLDLMLP--GIDGL 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R       +P+I ++        +   + G DD V KP   RE++ARV A  RR
Sbjct: 62  EVCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARLRR 121

Query: 119 L--------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +        GP+ V     +  + GE   L  +E  +L  L+ N GK  ++
Sbjct: 122 RTGLIKHADRKVEEEIAYGPLVVRPARYEVFLNGEKLDLTLKEYELLVLLINNPGKVFSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             + S I+G FD   +   V+ HI  LR+K+ R+      +++ R +GY  
Sbjct: 182 DFLLSTIWG-FDYTSDTRTVDVHIYHLRQKIERDPSQPGFIETVRGVGYRF 231


>gi|289550550|ref|YP_003471454.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus lugdunensis HKU09-01]
 gi|289180082|gb|ADC87327.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus lugdunensis HKU09-01]
          Length = 236

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 100/231 (43%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +E     E         + D+  ++  L  K    +
Sbjct: 5   ILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVMLPKK--DGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 63  EVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQ 122

Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             N  A             IR+  +  +     E+  L  +E  +L YL+  +G+ + + 
Sbjct: 123 FVNEAANDAANEEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            + ++++  ++ A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 183 HMLNSVWN-YEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|116625337|ref|YP_827493.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228499|gb|ABJ87208.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 230

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D A +           G   +              A+ D+  ++  L        
Sbjct: 5   IAIVEDEAELASLIEYNLTRHGYETQILGGGTGTMRALEQAKPDLILLDVMLPDA--DGF 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IR   A S+ P++ ++        +   + G DD + KP   RE++ARV A  RR
Sbjct: 63  ELCRQIRHSSALSRTPVLFLTARSDEVDRVLGLEIGGDDYMTKPFSPRELIARVKAHLRR 122

Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++         GP R+    R   + G    L   E  +LEY + + G+  ++ Q+  A
Sbjct: 123 EEMDAEPGAVGIGPFRLDRTARRVYLNGREISLTSTEFNLLEYFLTHPGRAYSRDQLLEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++G     V    V+ H+ +LR+++         + + R  GY  +
Sbjct: 183 VWGE-QRYVTPRTVDVHVRRLREQIEEQPDAPRYLTTVRGFGYRFE 227


>gi|271499555|ref|YP_003332580.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270343110|gb|ACZ75875.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 229

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    ++  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNRLAEPYPELVLLDWMLP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +         +     +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225


>gi|22298132|ref|NP_681379.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294310|dbj|BAC08141.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 256

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEF-EEWLQSSARED---VSAIEAFL 53
            ++I+D  L+++  +    ++G     + +G+ +L     +L      +   V  I   +
Sbjct: 24  ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83

Query: 54  IGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +  G   L+L R+IR     VP++ IS   S    +   + G DD + KP   RE+LAR 
Sbjct: 84  MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143

Query: 113 AAIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            A+ RR ++             + ++       ++GE   L  +E ++LE  M +  +  
Sbjct: 144 RALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVW 203

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + Q+   ++G  D   +   V+ HI  LR+K+  +      + + R  GY  
Sbjct: 204 PREQLLDQVWGP-DFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255


>gi|299538494|ref|ZP_07051777.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
 gi|298726081|gb|EFI66673.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  F + +         + D++ ++  +        
Sbjct: 3   ILVVDDEKEIADLIELYLKNENYHVFKFYTAQEALACIEHEKVDLAVLDIMIPD--IDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR     P+I ++        ++ F  G DD + KP    E++ARV A  RR   
Sbjct: 61  TILRKIRETLNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQIRRFTL 120

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K   +  +   + +  + R   +      L   E  IL YL ANRG  ++  Q+F
Sbjct: 121 YNLSSKQQEDIIDFAGLVINKNTRQVFLNERPISLTPTEFAILWYLCANRGTVISSEQLF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+G        N V  HI  LR+K+++       + +   +GY+I+
Sbjct: 181 QEIWGEK-YFSSNNTVMVHIRHLREKMKDAAENPKYIKTVWGVGYTIE 227


>gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL S4-171]
          Length = 240

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 8   ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPE--MDGI 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R +   VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 66  EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  +  +  +  ++  L  +E  +L +L  +RGK  +
Sbjct: 126 GKAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 186 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 237


>gi|306818188|ref|ZP_07451919.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|304649152|gb|EFM46446.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 229

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 14/229 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G    G    +      +  R ++  ++  L   G   
Sbjct: 1   MIYFVEDDRNIRDLVVYTLGSTGFEALGCEDDKAFRAEMAKTRPELVLLDIMLP--GTDG 58

Query: 61  LELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R +   R+ + +P+I ++   +    +   D G DD V KP    E+++RV A+ R
Sbjct: 59  IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118

Query: 118 RLKVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R   S            G I +        V GE   L  +E ++LE LM   G   ++ 
Sbjct: 119 RSSRSAQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+  +I+G +    E   V+ HI  LRKKL        + + R +GY +
Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGEA--AKYIKTVRGVGYKV 224


>gi|90579403|ref|ZP_01235213.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14]
 gi|90440236|gb|EAS65417.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14]
          Length = 229

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G   +   + +++  L+         I    +  G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGY--QAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + ++      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  NLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  ++  +   +++           E   +   E ++L + M ++ +  ++ Q+ + 
Sbjct: 123 VSPTALDDVIDVQGLKLDPVSHRVTSDDEPLEMGPTEFKMLHFFMTHQERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALESGGHDKMVQTVRGAGYRF 225


>gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
 gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
          Length = 229

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D    ++        +G  +      E    L S A  D+  ++  +       +E
Sbjct: 9   LLVEDEPAQREVLAYNLEAEGFEVRRAEDGEEAMLLVSEAAPDLVILDWMMPL--MSGIE 66

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++   +   +P+I +S       T+   ++G DD V KP + RE++ARV    RR 
Sbjct: 67  VCRQLKTRESTRHIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRRT 126

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +        I++  +       G    L   E R+L  L+   G+  ++ Q+   +
Sbjct: 127 RPAAAGALLSFDDIQLDPERHRVSRAGSELKLGPTEYRLLTTLLEKPGRVFSRDQLLDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI++LRK L  + G DP+ + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIARLRKALTREGGGDPIRTVRGAGYAL 228


>gi|219847194|ref|YP_002461627.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541453|gb|ACL23191.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 235

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   +   ++G  +           L  S + D+  ++  L   G   +
Sbjct: 6   ILVVDDEQPIVDLVSSYLINEGFIVHRAFDGPSALALARSVKPDLVILDIMLP--GLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +   + V ++ ++        L     G DD + KP   RE++ARV AI RR + 
Sbjct: 64  EVCRQLHRETTVYVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRA 123

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +           +   + +  + R+ E  G    L  RE  +L  L +  G+   + ++ 
Sbjct: 124 ARVLDVHQRPVLQFAGLLIDPERREVERNGIRVDLTPREFDLLYTLASYPGRVFTREELL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++G  D A  + VV+ HI  LR+KL +   G   V + R +GY  
Sbjct: 184 QRVWGP-DFAGIDRVVDVHIGTLRRKLDDDQHGTPLVQTVRGVGYKF 229


>gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262]
 gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL
           J2-064]
 gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL
           J1-208]
 gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262]
 gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816]
 gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220]
 gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes
           str. Scott A]
          Length = 237

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLP--GRDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N+  E G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSNAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231


>gi|222526878|ref|YP_002571349.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|222450757|gb|ACM55023.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 234

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   +   ++G  +           L  S + D+  ++  L   G   +
Sbjct: 6   ILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVMLP--GLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +   + V ++ ++        L     G DD + KP   RE++ARV AI RR +V
Sbjct: 64  EVCRQLHRDTSVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRV 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       +   + +  + R+ E  G    L  RE  +L  L +  G+   + ++ 
Sbjct: 124 IRAIEVNQRPILQFEGLLIDPERREVERNGVRVDLTPREFDLLYALASYPGRVFTREELL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++G  D A  + VV+ HI  LR+KL +   G   V + R +GY  
Sbjct: 184 QRVWGP-DFAGIDRVVDVHIGTLRRKLDDDHHGTPLVQTVRGVGYKF 229


>gi|326797358|ref|YP_004315178.1| PhoB family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326548122|gb|ADZ93342.1| two component transcriptional regulator PhoB, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 231

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD A +++         G       + +    +    R D+  ++  +   G   +E
Sbjct: 7   LIIDDEAPIREMIAVALEMAGYEYLEAENAQHGHEIIVDHRPDLILVDWMMP--GGSGIE 64

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++  S   ++P+I ++        +   + G DD + KP   RE++AR+ A+ RR 
Sbjct: 65  LTRRLKKDSTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 124

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +   E   + +    +   +  +   +   E R+L++LM ++ +  ++ Q+   +
Sbjct: 125 TPQGVDEPIEVDGLLLDPISQRVSIGNKPLEMGPTEYRLLKFLMTHQERAYSRAQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK + N      + + R  GY  
Sbjct: 185 WGG-NVYVEERTVDVHIRRLRKAIGN-THDSLIQTVRGTGYRF 225


>gi|307824851|ref|ZP_07655074.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307734209|gb|EFO05063.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 240

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  + +    G         E  +     A  D+  ++  L   G   +
Sbjct: 6   ILVVEDEDAIREMLMMVLEQAGFRSIAAADAEDAQKALDEALPDLILLDWMLP--GVSGV 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R ++      ++P+I ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 64  EWARRLKKDPMYRELPIILLTARGEEEDKVRGLEIGADDYMTKPFSPKELVARIRAVLRR 123

Query: 119 LKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               N+ A+   G + + ++     +  +   +   E R++++ M +  K   +TQ+   
Sbjct: 124 SGKINDLAQITLGDLVLDTEQHRLSIGDKQLEVSPTEFRLMQFFMTHPDKVFNRTQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     +EE  V+ HI +LRK L      D V + R  GY  
Sbjct: 184 VWGRS-VYIEERTVDVHIRRLRKILGEHGREDLVQTVRGFGYRF 226


>gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 229

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D             ++G +++         W  S    DV  ++  L   G    E
Sbjct: 4   LVVEDETRTATLLRRGLTEEGFAVDIVADGLEAVWQASEIAYDVIVLDLMLP--GLDGFE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  +  P++ +S    +   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  VCRRLRAAGRWAPVLMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRRGTH 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   +R+   GR     G    L  +E  +LEYLM + G+ +++T I   ++  
Sbjct: 122 ERPVVLDVDGLRLDPAGRTASRDGTALDLSPKEFALLEYLMRHPGEVLSRTAILEHVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F      NVV+ +I+ LR+K+    G   +++ R  GY +
Sbjct: 181 FAYDGTSNVVDQYIAYLRRKIDRPFGISQLETVRGAGYRL 220


>gi|295399015|ref|ZP_06808997.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110379|ref|YP_003988695.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978481|gb|EFG54077.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215480|gb|ADP74084.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 238

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++  ++ +           DV  ++  L   G   +
Sbjct: 7   ILVVDDEERIRRLLKMYLERENYIIDEADNGDDALTKALENDYDVILLDLMLP--GRDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCKEIREKKATPIIMLTAKGEESNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAAN 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D     V G+   L  +E  +L +L  +  K   + Q
Sbjct: 125 TMYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLAKSPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++HI +LR+KL   +      + +   +GY  + 
Sbjct: 185 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGYKFEV 235


>gi|261856844|ref|YP_003264127.1| PhoB family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261837313|gb|ACX97080.1| two component transcriptional regulator PhoB, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 230

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +++      G  G  L E  +  E  E L S    D+  ++  L   G   
Sbjct: 6   ILIVEDEKPIREMVTFALGRAGYDLIEASDVSEAFEQL-SHKLPDLVLLDWMLP--GASG 62

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E  R ++       VP++ ++     +  +   ++G DD + KP   RE++AR+ A+ R
Sbjct: 63  IEFARRMKRDEITRDVPIVMLTARGEEEDKVSGLEAGADDYITKPFSPRELMARIKAVLR 122

Query: 118 RLKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R    +     E   +R+  +            +   E R+L + M +  +  ++TQ+  
Sbjct: 123 RASPDSEGGVIEVAGLRLDPESHRVTGGSVDIEVGPTEFRLLTFFMTHPERVFSRTQLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G  +  VEE  V+ HI +LRK L        + + R +GY +
Sbjct: 183 RIWGR-NAYVEERTVDVHILRLRKALVPSGFDALIQTVRGVGYRL 226


>gi|84514488|ref|ZP_01001852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Loktanella vestfoldensis SKA53]
 gi|84511539|gb|EAQ07992.1| phosphate regulon transcriptional regulatory protein PhoB
           [Loktanella vestfoldensis SKA53]
          Length = 229

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        +G  +           L    + D+  ++  L   G   +E
Sbjct: 9   LVVEDEPAQREVLAYNLESEGFRVIKAADGNEALLLIEEEQPDLILLDWMLP--GTSGIE 66

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R I++       P+I +S        +   ++G DD ++KP    E+LARV A  RR 
Sbjct: 67  ICRQIKSRPAFRMTPVIMLSARSEEVDKVRGLETGADDYISKPYSIIELLARVKAHLRRS 126

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    R     I + S+            L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPATMGERLIYNDILLDSETHKVFRGENELKLGPTEFRLLTTFMEKPGRVWSRDQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ H+ +LRK L +  G D + + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHVGRLRKVLGSHGGEDLIRTVRGAGYAL 228


>gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU121]
          Length = 241

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 100/234 (42%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  S E   + + +E  Q +   D + I   L+      +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERE--SFETHEASDGKEAYQLAMENDYACILLDLMLPEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 63  EVATQLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +  E   + + +D        E   L  +E  +L YL     K   + Q
Sbjct: 123 TTPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD---PVDSKRFLGYSIDWN 223
           +   ++  ++   +   V++H+ +LR+KL NK+  D    + +   +GY  + N
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKL-NKVSSDAAHMIQTVWGVGYKFEVN 234


>gi|308069543|ref|YP_003871148.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305858822|gb|ADM70610.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 238

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  ++   + + E  LQ +   D S I   ++  G   +
Sbjct: 8   ILIVDDEERIRRLLRMYLEKEGYVID--EAEDGEIALQKATASDYSIILLDVMLPGMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   +R     P+I ++        +  F+ G DD V KP   RE++ RV AI RR   
Sbjct: 66  EVCTRLRQTKATPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSE 125

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   V +N      + +  D       G    L  +E  +L YL  +  K  ++ +
Sbjct: 126 TAFLTKEAVPSNSIVFPNLIIEHDAHRVTAGGIEISLTPKEYELLHYLAVSPDKVFSREE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY ++ 
Sbjct: 186 LLKDVWN-YEFFGDLRTVDTHVKRLREKLNKVSPEAAAMITTVWGVGYKLEV 236


>gi|72382276|ref|YP_291631.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72002126|gb|AAZ57928.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 245

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 100/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-----DVSAIEAFLIGK 56
            ++++D   +++        +G  +E   + +  E    S  +     D+  ++  L   
Sbjct: 15  LLIVEDDKSIRETLNEALVAEGYQVEACKTGDEAEARVFSQFDTRKKIDLIVLDLMLPN- 73

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +EL R +R ++ + P++ +S   S    +   + G DD + KP    E++AR  AI
Sbjct: 74  -LNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAI 132

Query: 116 YRRLKVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            RR + ++ +A+          I ++          +   L  +E +I+E  + N  +  
Sbjct: 133 LRRSETNHEKAQDSSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPKRVW 192

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++ Q+   I+G+ D   +   V+ HI  +R+K+ +     D + + R  GY  
Sbjct: 193 SRDQLLEQIWGI-DYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGYKF 244


>gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 224

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++I+D   ++D       ++G  +    + +   E+  ++    +  ++  L        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPD--ISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S+VP++ I+        L  F+ G DD V KP   +E++ARV AI  R   
Sbjct: 63  SLLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYG 122

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++      E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++
Sbjct: 123 ASEEEGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 183 G-YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 222


>gi|269976505|ref|ZP_06183490.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|269935306|gb|EEZ91855.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
          Length = 229

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 14/229 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G    G    +      +  R ++  ++  L   G   
Sbjct: 1   MIYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTRPELVLLDIMLP--GTDG 58

Query: 61  LELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R +   R+ + +P+I ++   +    +   D G DD V KP    E+++RV A+ R
Sbjct: 59  IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118

Query: 118 RLKVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R   S            G I +        V GE   L  +E ++LE LM   G   ++ 
Sbjct: 119 RSSRSAQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+  +I+G +    E   V+ HI  LRKKL        + + R +GY +
Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGEA--AKYIKTVRGVGYKV 224


>gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 228

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G  +   NS        +++  D+  ++  +       LE
Sbjct: 6   LVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASPPDLMVLDIMMPDV--DGLE 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA  +  P++ ++   ++   +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 64  VCRRIRAAGETFPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRALSRRGAP 123

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         +   +R+ +  R+         L  +E  +L   +++  + + +  +   
Sbjct: 124 AQGEDGHRVLQYADLRLDTATREAYRGDRQISLTAKEYELLHLFLSHPRQVLTRDTLMEK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D + E NV+E +++ LR KL        + + R +GY +
Sbjct: 184 VWG-YDYSGESNVLEVYVAYLRNKLEAGGEPRLIQTVRGVGYVL 226


>gi|294501112|ref|YP_003564812.1| two-component response regulator ResD [Bacillus megaterium QM
           B1551]
 gi|294351049|gb|ADE71378.1| two-component response regulator ResD [Bacillus megaterium QM
           B1551]
          Length = 238

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++         +G  +E   + +  E ++ +   D   I   L+  G   +
Sbjct: 7   LLLVDDEDRIRRLLKMYLEKEGYIIE--EAADGHEAIEKALHIDYDLIVLDLMMPGIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCKQIREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 124

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +          N      + + +D       G+   L  +E  +L YL     K   + Q
Sbjct: 125 ATFIQPETSVKNLIVFDHLTIDNDAHRVTADGKEVNLTPKEYELLCYLAKTPDKVYDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  +D   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 185 LLREVW-HYDFFGDLRTVDTHVKRLREKLNRVSSQAAKMIVTVWGVGYKFEV 235


>gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 263

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + + EE L+    E V      ++  G    
Sbjct: 30  ILVVDDDPSIIELVSYNLAREGYDV--LKAYDAEEALKVVGNESVDMFIVDIMLPGMDGF 87

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R    +   P++ +S        +   + G DD + KP   RE++AR+ A++RR
Sbjct: 88  ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147

Query: 119 LKVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +++S    E          + +  +  + +V  +   L   E  +L +L  N GK  ++ 
Sbjct: 148 IQLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRD 207

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 208 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256


>gi|297617001|ref|YP_003702160.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144838|gb|ADI01595.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 237

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +                R D+  ++  L       L
Sbjct: 6   ILVVDDEVHIVELVKFNLEKEGFQVRVAYDGITALTQAELVRPDLIILDIMLPQ--LDGL 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R+    S  P+I ++       T+   + G DD + KP   RE++ARV A  R 
Sbjct: 64  EVCRRLRSMQDFSSTPIIMLTAKGEEFDTVLGLEMGADDYIKKPFSPREMVARVKARLRA 123

Query: 119 LKVSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            ++      TG        + V  D  +  V      L  +E  +L+ L +N+GK  ++ 
Sbjct: 124 KRILEAEKATGRKTLVFKDLIVIPDKHEAFVGERRLELTPKEFELLKLLASNQGKVFSRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G ++ + +   V+ HI  LR+KL  +      +++ R +GY  
Sbjct: 184 VLLEKVWG-YEFSGDTRTVDVHIRHLRQKLGESPSSPQYIETVRGVGYRF 232


>gi|326317379|ref|YP_004235051.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374215|gb|ADX46484.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 235

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G         E  +    +   DV  ++  L   G+  L+
Sbjct: 8   LIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLP--GQSGLQ 65

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  RA      +P++ ++        +   D+G DD + KP   +E+LAR+ A+ RR 
Sbjct: 66  LARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + +      + + +       QG+   +   E ++L YLM +  +  ++ Q+   +
Sbjct: 126 APEQATDTVAISDLILDAGTYRVTYQGQQLKIGPTEFKLLHYLMKHPERVHSRAQLLDKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGVAGA--MVETVRGAGYRL 225


>gi|194364602|ref|YP_002027212.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347406|gb|ACF50529.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 229

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R  R  +   +VP+I ++        +   ++GVDD V KP   RE+LAR+ A+ RR
Sbjct: 63  DLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +     GPIR+           +  P+   E R+L + M +  +   + Q+   
Sbjct: 123 AREDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRAQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGS-VYVEERTIDVHIRRLRKTLEPFNAENMVQTVRGAGYRF 225


>gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
          Length = 235

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G S +   +      L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQ--LDGIE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + +RA   + P++ +S        +   + G DD + KP   RE+LARV A+ RR K 
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    +++N    G ++V+ +  +     ++  L  +E  +L YLM +    + + 
Sbjct: 124 KQEGDDSDNIADNSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232


>gi|227505097|ref|ZP_03935146.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198300|gb|EEI78348.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 232

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G  +    + +    L+  A   V  +   L+  G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDV--ILASDGPTALEQFANNTVDIVLLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  DVCKQLRATSSVPVIMVTSRDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHD 121

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    +     E G +R+  +     V GE   +P +E  +LEYL+ N G+ + + 
Sbjct: 122 VSAESQEEGLEEQILEGGRVRMDVERHIVMVDGEEVSMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEAEPSRPQHLVTVRGLGYKFE 231


>gi|217964346|ref|YP_002350024.1| ResD family transcriptional regulator [Listeria monocytogenes
           HCC23]
 gi|290893866|ref|ZP_06556844.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|217333616|gb|ACK39410.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           HCC23]
 gi|290556583|gb|EFD90119.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|307571088|emb|CAR84267.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 228

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLMLPN--MDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               + + +  ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ASPAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATET-KPFLHTVWGVGYKFD 225


>gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 232

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + +        +   +E     E    L      D+  ++  +  +G   +E
Sbjct: 7   LLVEDDAALAELVSWHLEREDFEVERTADGEEAILLARETPPDLVLLDWMI--EGVSGIE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R     + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ RR+
Sbjct: 65  VCRRLRRLADTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +  R     I + +        G    L   E R+L++ + + G+  ++ ++  ++
Sbjct: 125 RPALAGERLSYADIEMDTASHRVRRGGSPISLGPTEFRLLKHFLEHPGRVFSRERLLDSV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  +E   V+ HI +LRK +      D + + R  GY++D
Sbjct: 185 WGR-DSDIEPRTVDVHIRRLRKAINLADAPDLIRTVRSAGYALD 227


>gi|89072663|ref|ZP_01159228.1| putative DNA-binding response regulator PhoB [Photobacterium sp.
           SKA34]
 gi|89051483|gb|EAR56937.1| putative DNA-binding response regulator PhoB [Photobacterium sp.
           SKA34]
          Length = 229

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G   +   + +++  L+         I    +  G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGY--QAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + ++      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  NLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  ++  +   +++           E   +   E ++L + M ++ +  ++ Q+ + 
Sbjct: 123 VSPTALDDVIDVQGLKLDPVSHRVTSGDEPLEMGPTEFKMLHFFMTHQERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALESGGHDKMVQTVRGAGYRF 225


>gi|313901469|ref|ZP_07834924.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468263|gb|EFR63722.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 256

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G++                 R  V  ++  L         
Sbjct: 35  LVVDDEESLLELVAYNLQRNGMAPVLARDGAEALRRLEERRPQVIILDVMLPDT--DGFT 92

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R    Q P++ ++   S    +   + G DD V KP   RE++AR+ A+ RR + 
Sbjct: 93  LCRHLRERGIQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRTEG 152

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R + GPI +   G +    G+   L   E ++L  L A  G+   + ++   ++G  
Sbjct: 153 R--RQQIGPIVIDYAGHEVYRDGQRVALTPTEFKLLATLAAEPGRAFTRQELLDRVWGE- 209

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   +   V+ H+  LR+KL RN    + + + R  GY ++
Sbjct: 210 EAFGDPRTVDVHVRHLREKLERNPSQPEWILTVRGHGYKLN 250


>gi|302387812|ref|YP_003823634.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198440|gb|ADL06011.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 223

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD A ++         D +S++GF+ +E     ++      ++D+  I   ++   
Sbjct: 6   ILVVDDEARMRK-----LVKDFLSVKGFSVVEASNGEEAVDLFFEQKDIVLIILDVMMPK 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E  + IR +SQVP+I ++     +  L  FD GVD+ ++KP   + ++ARV AI R
Sbjct: 61  MDGWETCKTIRKYSQVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILR 120

Query: 118 RLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   V+ +  E G I +        + G+   L  +E  +L Y + N+G  +++ +I + 
Sbjct: 121 RSNAVTADAVEIGGICIDKAAHQVTIDGKDIDLSYKEFELLAYFLENQGIALSREKILNN 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++  +D   +   +++H+ KLR K+  K   D + +   +GY  + 
Sbjct: 181 VWN-YDYFGDARTIDTHVKKLRNKMGEKG--DYIKTIWGMGYKFEV 223


>gi|293392590|ref|ZP_06636910.1| phosphate regulon response regulator [Serratia odorifera DSM 4582]
 gi|291424992|gb|EFE98201.1| phosphate regulon response regulator [Serratia odorifera DSM 4582]
          Length = 229

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 96/229 (41%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G        LE E++  +  R      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGY-----QPLEAEDYDSAVTRLSEPFPDLVLLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 58  GGSGIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +               +   E ++L + M +  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPSSHRVMANELALDMGPTEFKLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 178 QLLNHVWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225


>gi|228997560|ref|ZP_04157173.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
 gi|228762188|gb|EEM11121.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
          Length = 231

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G S+  + + + +E L   +   +  +   ++      L
Sbjct: 6   ILIIDDDKEIVELLAVYLRNEGYSI--YKAYDGDEALHMLSLHQIDLMILDIMMPKRNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  + VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 64  EVCQQVREENTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSF 123

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +       + +       +V GE   L   E  IL  L +N G+  +  +IF
Sbjct: 124 QQVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   D       V  HIS LR+KL     G   + +   +GY I+
Sbjct: 184 ERVWNE-DGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIE 230


>gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 236

 Score =  242 bits (618), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +   +      +      S    D+  ++  L     +  
Sbjct: 8   ILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGE-- 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR +S VP+I ++    ++  +   + G DD + KP   RE++AR  A+ RR   
Sbjct: 66  RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E G + +   G    V GE   L   E ++L  L    G+  ++ ++   +
Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNGEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR K+ +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFE 229


>gi|315646922|ref|ZP_07900037.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277852|gb|EFU41176.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G   +  ++    E L  +  ED S I   L   G    
Sbjct: 5   ILIIEDETTIAQLERDYFELNGFFADLCHT--GNEGLHLALNEDYSLIVVDLQLPGMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R IR + +VP++ +S        +  F+ G DD + KP    E++AR  A   R K 
Sbjct: 63  ELCRQIRKNKEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMRYKR 122

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  V N       + +    R   V+ +      RE  +LE+L ++  +  +K ++
Sbjct: 123 LMGKQETVQNAEIHIRGLVIDKSARRVYVRNQEVVFTTREFNLLEFLASHPNRVFSKNEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  I+G+ D + +   V  H+ KLR+KL  +      +++    GY  
Sbjct: 183 FERIWGM-DSSGDIATVTVHVRKLREKLELDSSNPQYIETVWGAGYRF 229


>gi|163839443|ref|YP_001623848.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952919|gb|ABY22434.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 241

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+           G  +E  N       L S++  D+  ++  L   G    
Sbjct: 17  ILLVEDEELIAQVVRDYLVKAGYQVELANDGFTALHLASASNPDLIILDRMLP--GLDGA 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I ++   +    +   + G DD V KP+  RE++ RV ++ RR   
Sbjct: 75  EVCRRIRQTMSMPIILLTALGTEDDRILGLEMGADDYVTKPVSPRELVLRVNSVLRRSVK 134

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E     +    R   + G    L  RE  +L + +    +  ++  +  A++
Sbjct: 135 EFTPEPVVELAGFVLNPASRVVSLNGVDLALTAREFDLLAFFLRRPNQVFSREDLIRAVW 194

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           G   +  + + V  H+ +LR+K+  N      + + R LGY  D 
Sbjct: 195 GW--DFGDLSTVTVHVRRLREKIEQNPTQPLLLHTVRGLGYRFDV 237


>gi|85859021|ref|YP_461223.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85722112|gb|ABC77055.1| response regulator with a winged-helix DNA-binding domain
           [Syntrophus aciditrophicus SB]
          Length = 245

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 102/230 (44%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD   + +        +G ++    + + EE L++  + + D+  ++  L   G  
Sbjct: 17  ILVVDDEKDIVELLTFNLEKEGFAVT--QAFDGEEALKTIRTNKPDLVILDLMLP--GVS 72

Query: 60  VLELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            L++ R +R + +    P+I ++        +   + G DD + KP + RE++ARV A+ 
Sbjct: 73  GLDICRQVRRNEETETLPVIMLTAKGEPLDKVVGLEIGADDYITKPFNVRELVARVRAVL 132

Query: 117 RRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR      + S        + V        V G+   L   E ++L  L    G+  ++ 
Sbjct: 133 RRSSQRPKEASEGTFTFQGLHVDYRTYQVSVDGKKIELGPTEIKLLRCLTRQPGRVFSRD 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           Q+  A++G  +  VE   V+ HIS+LR  +  +K     + + R +GY  
Sbjct: 193 QLLDAVWGE-EAFVEPRTVDVHISRLRADIEQDKEKPKYILTVRGIGYKF 241


>gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
 gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
          Length = 234

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 99/231 (42%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D      G +G   E   + + +  LQ +  +D   +   L+       
Sbjct: 5   ILIVEDEKNIVDILSFNLGREGY--ETLEAYDGQSGLQLALEQDPDLVLLDLMLPKMNGF 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IRA     P+I ++        +   + G DD + KP   RE+LARV A  RR +
Sbjct: 63  DVCRSIRAEGKNTPVIMLTAREEENDKVMGLELGADDYITKPFSMRELLARVKANIRRRE 122

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++         +NR E G I V  D       G+   L +RE  +L +L A  GK  ++ 
Sbjct: 123 MAGNAPAAPVGSNRLEAGRISVDQDLMVAYKDGKALDLTQREYELLRFLAARPGKVFSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            +   ++       +   V+  + +LR+K+ +       + ++R  GY ++
Sbjct: 183 ALMENVWNYEGYVGDVRAVDVAVRRLREKVEDDPAQPQIIVTRRGQGYLLN 233


>gi|254414285|ref|ZP_05028052.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178960|gb|EDX73957.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 250

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-------EGFNSLEFEEWLQSSAREDVSAIEAFLI 54
            ++++D  L+++  +    ++G  +            L   +      +  +  ++  L 
Sbjct: 21  ILVVEDETLIREMLMLSLQEEGYDVVTAADGRTALTLLSEGDANDEECQFSLLILDLMLP 80

Query: 55  GKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L+L R+IR   + +P++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  QV--NGLDLCRLIRYKGNSIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCR 138

Query: 114 AIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR +          +   I ++ +     V+GE   L  +E R+LE  M    +  +
Sbjct: 139 ALLRRHRYNSIPQTPTLQLRDITLYPEECRVTVRGEEVNLSPKEFRLLELFMGYPRRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLIDQVWGA-DFLGDTKTVDVHIRWLREKLEKDPSQPEYLITVRGFGYRF 249


>gi|52425301|ref|YP_088438.1| OmpR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307353|gb|AAU37853.1| OmpR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 226

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D AL+ +G        G S++ F   +       SA  D   ++  L   G   +
Sbjct: 8   ILLIEDDALIGNGIKVGLTKSGFSVDWFTDGKTGLQAIKSAPYDAVVLDLTLP--GMDGM 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           ++ +  R      P++ ++   +L   +     G DD + KP    E++AR+ A+  RR 
Sbjct: 66  DILQQWRNEKIDTPVLILTARDTLNDRVTGLQRGADDYLCKPFALAEVIARLQALIRRRY 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   E   ++   + R   +QG+  PL  RE  +LE  M N+ + ++++ I   +Y 
Sbjct: 126 GQANPIVEHSLVKFDPNSRKVSLQGKDIPLTTREYNLLELFMMNKERVLSRSFIEEKLYN 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 186 -WDDEVSSNALEVHIHNLRQKL----GKQFIRTVHGVGYALGKN 224


>gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 236

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +                + D+  ++  L  K    +
Sbjct: 5   ILVVDDEKSIADILKFNLEKEGFDVTCAYDGNEALERVKERKPDLMLLDIMLPYK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE+LARV A  RR +V
Sbjct: 63  EVCREVRKQYDLPIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANLRRQQV 122

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + +           G + +  +    + +GE   L  RE  ++ YL  + G+ + +  + 
Sbjct: 123 AADDAPTTQKEITIGELSILPEAYQVKKRGEPVDLTHREFELIHYLGKHLGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            A++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 QAVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPNWIMTRRGVGYFL 228


>gi|23502991|ref|NP_699118.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           suis 1330]
 gi|62290982|ref|YP_222775.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700892|ref|YP_415466.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|161620053|ref|YP_001593940.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           canis ATCC 23365]
 gi|163844158|ref|YP_001628563.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           suis ATCC 23445]
 gi|189025195|ref|YP_001935963.1| transcriptional regulator [Brucella abortus S19]
 gi|254690277|ref|ZP_05153531.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 6 str. 870]
 gi|254696392|ref|ZP_05158220.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254700774|ref|ZP_05162602.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           suis bv. 5 str. 513]
 gi|254705144|ref|ZP_05166972.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           suis bv. 3 str. 686]
 gi|254707339|ref|ZP_05169167.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis M163/99/10]
 gi|254709119|ref|ZP_05170930.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis B2/94]
 gi|254713455|ref|ZP_05175266.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           ceti M644/93/1]
 gi|254716189|ref|ZP_05178000.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           ceti M13/05/1]
 gi|254731306|ref|ZP_05189884.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 4 str. 292]
 gi|256030645|ref|ZP_05444259.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis M292/94/1]
 gi|256045749|ref|ZP_05448627.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256060106|ref|ZP_05450288.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           neotomae 5K33]
 gi|256112468|ref|ZP_05453389.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 3 str. Ether]
 gi|256258530|ref|ZP_05464066.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 9 str. C68]
 gi|260546246|ref|ZP_05821986.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260563045|ref|ZP_05833531.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260567387|ref|ZP_05837857.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260755816|ref|ZP_05868164.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759039|ref|ZP_05871387.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260760764|ref|ZP_05873107.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884841|ref|ZP_05896455.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261217962|ref|ZP_05932243.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261314822|ref|ZP_05954019.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261316619|ref|ZP_05955816.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261321188|ref|ZP_05960385.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324082|ref|ZP_05963279.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751283|ref|ZP_05994992.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261755848|ref|ZP_05999557.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|265987691|ref|ZP_06100248.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265992165|ref|ZP_06104722.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993903|ref|ZP_06106460.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|294851371|ref|ZP_06792044.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NVSL 07-0026]
 gi|297247369|ref|ZP_06931087.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus bv. 5 str. B3196]
 gi|23349030|gb|AAN31033.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           suis 1330]
 gi|62197114|gb|AAX75414.1| PhoB, phosphate regulon transcriptional regulatory protein Phob
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616993|emb|CAJ12102.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|161336864|gb|ABX63169.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           canis ATCC 23365]
 gi|163674881|gb|ABY38992.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           suis ATCC 23445]
 gi|189020767|gb|ACD73489.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|260096353|gb|EEW80229.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260153061|gb|EEW88153.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260156905|gb|EEW91985.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669357|gb|EEX56297.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671196|gb|EEX58017.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675924|gb|EEX62745.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260874369|gb|EEX81438.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260923051|gb|EEX89619.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293878|gb|EEX97374.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261295842|gb|EEX99338.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300062|gb|EEY03559.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261303848|gb|EEY07345.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261741036|gb|EEY28962.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261745601|gb|EEY33527.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262764884|gb|EEZ10805.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263003231|gb|EEZ15524.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|264659888|gb|EEZ30149.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294819960|gb|EFG36959.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NVSL 07-0026]
 gi|297174538|gb|EFH33885.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus bv. 5 str. B3196]
          Length = 228

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLP--GVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +     G DD V KP    E+LARV A+ RR
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S  ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 185 VWGP-DIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYSF 227


>gi|46907735|ref|YP_014124.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093429|ref|ZP_00231194.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226224108|ref|YP_002758215.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254852131|ref|ZP_05241479.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254931442|ref|ZP_05264801.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300764827|ref|ZP_07074817.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|46881004|gb|AAT04301.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018208|gb|EAL08976.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225876570|emb|CAS05279.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605434|gb|EEW18042.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293582993|gb|EFF95025.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300514503|gb|EFK41560.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|328465545|gb|EGF36774.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328474868|gb|EGF45668.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332311949|gb|EGJ25044.1| Transcriptional regulatory protein yclJ [Listeria monocytogenes
           str. Scott A]
          Length = 228

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLMLPN--MDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               + + +  ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATET-KPFLHTVWGVGYKFD 225


>gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
 gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
          Length = 233

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 6   VVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLP--GRDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 64  VCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +  ++N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 124 PAQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229


>gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 224

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++I+D   ++D       ++G  +    + +   E+  ++    +  ++  L        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPD--ISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S+VP++ I+        L  F+ G DD V KP   +E++ARV AI  R   
Sbjct: 63  SLLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYG 122

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++      E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++
Sbjct: 123 ASEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 183 G-YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 222


>gi|260587254|ref|ZP_05853167.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
 gi|331083571|ref|ZP_08332682.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542449|gb|EEX23018.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
 gi|330403782|gb|EGG83334.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 224

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
           M   ++D   +++  +   G  G   +GF   +  +        ++  ++  L G  G  
Sbjct: 1   MIYCVEDERNIRELLVYTLGTTGFEAKGFGDGKEFKKALKEELPELILLDIMLPGEDGYT 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +LE  +   + S++P+I ++   +    +   + G DD + KP    E LARV A+ RR 
Sbjct: 61  LLEELKKEPSTSEIPVIMVTAKEAEYDKVRGLEGGADDYITKPFGMMEFLARVKAVLRRS 120

Query: 120 KVSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           K  +++ E     + V  +            L  +E  +L YL+ N+G  +++ +I   I
Sbjct: 121 KKHSSKKEYHYKTLTVNVERHQVFDNDRAVELTLKEFELLRYLVENKGIVLSRDEILEKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++ A E   V+ HI  LR+KL +      +++ R +GY I
Sbjct: 181 WG-YECAGETRTVDVHIRTLRQKLGDSG--FLIETVRGVGYRI 220


>gi|77460461|ref|YP_349968.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384464|gb|ABA75977.1| two-component system, transcriptional regulatory protein PhoP
           [Pseudomonas fluorescens Pf0-1]
          Length = 225

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 108/222 (48%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLQTRLTESGHVVESVANAEEALYQTGQFNFDLAVIDLGLP--GMSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R+  +  P++ ++   + Q  ++   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRSGGKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVPKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL    GF P+D+ R LGY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEGPAGFKPIDTVRGLGYLFN 221


>gi|317498542|ref|ZP_07956836.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894235|gb|EFV16423.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 226

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 107/223 (47%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD + ++          G  +    + + EE + +  + + ++ +   ++      
Sbjct: 6   ILVVDDESRMRKLVKDFLTRAGYQV--LEAQDGEEAVDTFYSTKGINLLVLDVMMPKMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ + IR  S+VP+I ++     Q  L  F+ GVD+ ++KP   + ++ARV AI RR  
Sbjct: 64  WEVVKEIRKVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRTV 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    + E G I +   G    + G+   L  +E  +L+Y M+N+G+ + +  I + ++ 
Sbjct: 124 QTEGEQIEAGGIVMDVGGHHVSIDGKSINLSYKEFELLQYFMSNQGRALTRESILNQVWN 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR KL  K     + +   +GY  + 
Sbjct: 184 -YDYFGDARTIDTHVKKLRNKLGEKGS--YIHTIWGMGYKFEV 223


>gi|125973909|ref|YP_001037819.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714134|gb|ABN52626.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 236

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 103/228 (45%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       ++G  +E F   E    +    + D+  ++  L   G   
Sbjct: 5   LIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIMLP--GVDG 62

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ + I+ +     +P+I ++        +   + G DD ++KP   RE +ARV   +R
Sbjct: 63  FEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFR 122

Query: 118 R----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R     + S  R   G I +  + R+     ++  +  +E  +L+ L+ NRGK +++  +
Sbjct: 123 RQADSFENSPKRVNVGRITIDFERREVYKDNQIIEMTFKEFELLKLLIMNRGKVLSRDML 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              I+G FD   E   V+ HI  LR+K+ +       +++ R +GY  
Sbjct: 183 LQKIWG-FDFFGETRTVDVHIRYLRQKIEDDDNNPVYIETVRCIGYRF 229


>gi|42518151|ref|NP_964081.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|41582435|gb|AAS08047.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|329666463|gb|AEB92411.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 235

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L  K    L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYNPDLMILDLMLPKK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    E         G + +  +    E  GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 TQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +      +  ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYV 229


>gi|238787963|ref|ZP_04631759.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           frederiksenii ATCC 33641]
 gi|238723911|gb|EEQ15555.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           frederiksenii ATCC 33641]
          Length = 239

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 97/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G        LE E++  +  R      D+  ++  L   
Sbjct: 15  ILVVEDEAPIREMVCFVLEQNGY-----QPLEAEDYDSAVTRLSEPFPDLVLLDWMLP-- 67

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 68  GGSGIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIK 127

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +           +   +   E ++L + M +  +  ++ 
Sbjct: 128 AVMRRISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSRE 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 188 QLLNYVWGT-NVYVEDRTVDVHIRRLRKALEVDGHDKMVQTVRGTGYRF 235


>gi|150392434|ref|YP_001322483.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149952296|gb|ABR50824.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G  +E  +  E      S    D+  ++  L        
Sbjct: 5   ILIVEDEKPIADILKFNLEKEGYRIEMAHDGEDALKKVSEFIPDLVLLDVMLP--KLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR    +P++ ++        +   + G DD + KP   RE+LARV A +RR++ 
Sbjct: 63  QVCRKIRESFSMPILMLTAKEEEVDKVLGLEIGADDYITKPFGMRELLARVNANFRRMEA 122

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +  +G + +     + +    V  L  RE  +L++L     +   + Q+   
Sbjct: 123 PAGSQGGGKISSGKLSIDFSKYEVKRDQLVIELTSREFELLKFLAIQAEQVFTREQLLKE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G ++   +   V+  + +LR+K+ +  G    + +KR +GY  
Sbjct: 183 VWG-YEYYGDIRTVDVTVRRLREKVEDDSGNPKYIQTKRGVGYYF 226


>gi|332185053|ref|ZP_08386802.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
 gi|332014777|gb|EGI56833.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
          Length = 230

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + +  +  F  +   +      E    L      D+  ++  +  +G   +E
Sbjct: 7   LLVEDDAALAELLVFHFKREDFEVVHTPDGEEALLLARENTPDIVLLDWMV--EGISGIE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R     + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ RR+
Sbjct: 65  VCRRLRRAPETANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +        I + + G      GEV  L   E R+L++ + + G   ++ ++  A+
Sbjct: 125 RPALAGEALVYADIEMDTVGHKVRRAGEVVSLGPTEFRLLKHFLEHPGWVFSRERLLDAV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  +E   V+ HI +LRK +      D + + R  GYS+D
Sbjct: 185 WG-HDSDIESRTVDVHIRRLRKAINIGDRPDIIRTVRSAGYSLD 227


>gi|238763581|ref|ZP_04624542.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC
           33638]
 gi|238698213|gb|EEP90969.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC
           33638]
          Length = 239

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G S +   +          A   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQAPPAIILLDLMLP--GSDGIS 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 NNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             + +E+ P+ +         QG    L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 REQPSESAPLLIDESRFQASYQGHFLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              V +  ++SHI  LR+KL +  G  P + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWE 232


>gi|190573011|ref|YP_001970856.1| putative phosphate regulon two-component response regulator
           transcriptional regulator [Stenotrophomonas maltophilia
           K279a]
 gi|254521224|ref|ZP_05133279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Stenotrophomonas sp. SKA14]
 gi|190010933|emb|CAQ44542.1| putative phosphate regulon two-component response regulator
           transcriptional regulatory protein [Stenotrophomonas
           maltophilia K279a]
 gi|219718815|gb|EED37340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Stenotrophomonas sp. SKA14]
          Length = 229

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R  R  +   +VP+I ++        +   ++GVDD V KP   RE+LAR+ A+ RR
Sbjct: 63  DLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +     GPIR+           +  P+   E R+L + M +  +   + Q+   
Sbjct: 123 AREDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRAQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGS-VYVEERTIDVHIRRLRKTLEPFNAENMVQTVRGAGYRF 225


>gi|296101518|ref|YP_003611664.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055977|gb|ADF60715.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 229

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    D+  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALELSGHDRMVQTVRGTGYRF 225


>gi|22536883|ref|NP_687734.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25010796|ref|NP_735191.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76786877|ref|YP_329467.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76798183|ref|ZP_00780434.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77406409|ref|ZP_00783468.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77408360|ref|ZP_00785101.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77410786|ref|ZP_00787144.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77413081|ref|ZP_00789282.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22533733|gb|AAM99606.1|AE014224_9 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|23095150|emb|CAD46385.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561934|gb|ABA44518.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76586446|gb|EAO62953.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77160874|gb|EAO71984.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77163165|gb|EAO74118.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77173041|gb|EAO76169.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77174973|gb|EAO77783.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|319744748|gb|EFV97090.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 236

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 103/232 (44%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G   E   + +  E L   A      I   L+      L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGY--ETATAFDGREALVQYAEFQPDLIILDLMLPELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR   
Sbjct: 62  EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     + +++    G +++  D    + +GE   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEESAQNASSDITIGELQILPDAFIAKKRGEEIELTHREFELLHHLATHIGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +  G  + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYM 232


>gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2]
          Length = 227

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D    L G +G  +   +              D+  ++  L   G    
Sbjct: 4   ILLVEDEDSFSDPLSYLLGKEGYEVTVADDGLKALAEFDRNGADLVLLDLMLP--GVSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE+LARV A+ RR   
Sbjct: 62  EVCRELRVKSSVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVLRRNVE 121

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S      +  E G +R+  +     V+GE   +P +E  +LE L+ N G+ + + Q+   
Sbjct: 122 SEGFDDESVLEAGGVRIDVERHVVSVRGEELSMPLKEFELLEILIRNSGRVMTRGQLIDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+G  D   +   ++ H+ +LR K+  N      + + R LGY  +
Sbjct: 182 IWGE-DYVGDTKTLDVHVKRLRAKVEQNPSEPRLLTTVRGLGYKFE 226


>gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
 gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
          Length = 235

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E L  + + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIE-LFEAEQPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     +  +   + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LVSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|159044087|ref|YP_001532881.1| phosphate regulon transcriptional regulatory protein
           [Dinoroseobacter shibae DFL 12]
 gi|157911847|gb|ABV93280.1| phosphate regulon transcriptional regulatory protein
           [Dinoroseobacter shibae DFL 12]
          Length = 228

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    +D        +G  +    + +    +      D+  ++  L       +E
Sbjct: 8   LVVEDEPAQRDVLCYNLEAEGFRVVQAENGDEAMVMVEEETPDIIVLDWMLPAV--SGIE 65

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +++       P+I +S        +   ++G DD V KP    E++ARV A  RR+
Sbjct: 66  VCRRLKSRPDTRAIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRV 125

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    +     I + ++        +   L   E R+L   M   G+  ++ Q+   +
Sbjct: 126 RPATVGQQLRYDDILLDAESHRVFRDDQALKLGPTEFRLLATFMEKPGRVWSREQLLDRV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 186 WGR-DIYVDTRTVDVHIGRLRKALCQHGGTDPVRTVRGAGYAL 227


>gi|410141|gb|AAA67497.1| ORFX17 [Bacillus subtilis subsp. subtilis str. 168]
          Length = 240

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +  +++   + +        A  D+  ++  +   G   +
Sbjct: 9   ILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMP--GTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 67  EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++         N      + +  D       G    L  +   +L +L     K   + +
Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKVYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237


>gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
 gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
          Length = 226

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G   +     +  + + ++   D   I   ++  G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLQTEGF--DTVVVGDGNDAVTAAQEHDPDLILLDVMLPGMSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP++ ++        +   +SG DD + KP   +E++ARV A  RR   
Sbjct: 63  DVCRTVREFSTVPIVMLTARTDTVDVVLGLESGADDYITKPFKPKELIARVRARLRRSPE 122

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G + + + G +    GEV  L   E  +L  L +  G+  ++ ++   ++
Sbjct: 123 EADESTTIRVGEVEIDTAGHEVTRGGEVINLTPIEFDLLTTLASRPGQVFSREELLEKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
           G + ++ +  +V  H+ +LR K+ R+      V + R +GY 
Sbjct: 183 G-YRKSGDTRLVNVHVQRLRSKVERDPDDPQVVLTVRGIGYK 223


>gi|220931316|ref|YP_002508224.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219992626|gb|ACL69229.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 237

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   +    +G  ++     +   +  S+   ++  ++  L       +
Sbjct: 7   ILVVDDEQEIRELLKSYLEREGYVVDTVKDGKTALFRVSNQDYNLVILDIMLPDT--DGV 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  + +P+I ++   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 65  EVCRTIREITNIPIIMLTARDSEVDKVLGLRIGADDYITKPFLPGELIARVKAQLRRFFV 124

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S    + G +++  DG     + +   L   E +IL  L    GK   K QI
Sbjct: 125 LGSEGDARSRKMVKFGDLKIDFDGYRVYKRNKEVQLTSTEFKILLLLAREPGKVFTKKQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           F+ ++G  D    +N V  HI +LR K+ +     + +++   +GY  
Sbjct: 185 FNKVWG-DDYLEADNNVMVHIRRLRTKIEDDPKNPEFIETVWGIGYRF 231


>gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 233

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    + + EE L+    E+   I   L+      L
Sbjct: 4   ILVVDDEKPISDIVKFNLDKEGYDV--VTAYDGEEALEKVESEEPDLILLDLMLPKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 62  EVARQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N  + GP+ + SD       G    L  RE  +L YL  +  + + +  + 
Sbjct: 122 FQQSNEEVKNNIKIGPLVINSDSYSVTRDGAQLDLTHREFELLHYLAQHTDQVMTREHLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+        +  ++R +GY +
Sbjct: 182 QTVWG-YDYFGDVRTVDVTVRRLREKIEETPSNPQILVTRRGVGYYL 227


>gi|229005191|ref|ZP_04162911.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
 gi|228756051|gb|EEM05376.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
          Length = 231

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G  +  + + + +E L   +   +  +   ++      L
Sbjct: 6   ILIIDDDKEIVELLAVYLRNEGYCI--YKAYDGDEALHMLSLHQIDLMILDIMMPKRNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  + VP++ +S        +    +G DD + KP +  E++ARV A+ RR   
Sbjct: 64  EVCQQVREENTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSF 123

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +       + +       +V GE   L   E  IL  L +N G+  +  +IF
Sbjct: 124 QQVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   D       V  HIS LR+KL     G   + +   +GY I+
Sbjct: 184 ERVWNE-DGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIE 230


>gi|255527025|ref|ZP_05393916.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186975|ref|ZP_06855375.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509281|gb|EET85630.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048413|gb|EFG87847.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 232

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + +  E L+    + V  I   ++      +
Sbjct: 6   ILVVDDEKEIRNLIGIYLENEGYKV--IKASDGCEALKVLKSQQVHLIILDIMMPNMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR H  +P+I +S        +    +G DD + KP +  E+LARV +  RR   
Sbjct: 64  EACIKIREHKNMPIIMLSAKGEDMDKIMGLTTGADDYITKPFNPLELLARVKSQLRRYTK 123

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            NN          E   + +     + +V  ++  L RRE  ILE L  NRG   +  +I
Sbjct: 124 LNNAMQNINSDIIEIDDLTINVSTHEVKVGEKLINLTRREFDILELLAKNRGIVFSTEKI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +  ++   +    +N V  HI K+R+K+         + +   +GY I+
Sbjct: 184 YERVWNE-EFYQSDNTVMVHIRKIREKIEENSRKPKYIKTVWGVGYKIE 231


>gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR
 gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR
 gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis]
 gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909]
 gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU144]
 gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU028]
          Length = 233

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 6   VVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLP--GRDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 64  VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +  + N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 124 PAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229


>gi|118477412|ref|YP_894563.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225863917|ref|YP_002749295.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|300117557|ref|ZP_07055344.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|118416637|gb|ABK85056.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225786611|gb|ACO26828.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|298725092|gb|EFI65747.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 254

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 253


>gi|115376427|ref|ZP_01463663.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823253|ref|YP_003955611.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366559|gb|EAU65558.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396325|gb|ADO73784.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 226

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   + +      G +G+S+               +  D   ++  +   G   LE
Sbjct: 6   LLIDDDTRMYELLAQYLGQNGISVAHAPDGGRGLAALEGSPYDAVLLDVMMP--GMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA +QVP++ ++        +   + G DD + KP   RE+LAR+ A+ RR + +
Sbjct: 64  VCKRIRAKTQVPILMLTARGDETDRVVGLELGADDYLAKPFSPRELLARLRAVLRRAQPT 123

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +R E   + +   GR+ +V G    L   E  +L  L+   G+ + +  +     G 
Sbjct: 124 AVADRMEAQGVSIDVAGREVKVNGRPVELTGLEFELLVALVRRAGRVIPRDALLGEA-GR 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V E  V+ HIS LR+KL ++ G   + + R +GY  
Sbjct: 183 SDTVVGERTVDVHISHLRQKLGDEGGR-LIKTVRGVGYVF 221


>gi|239637987|ref|ZP_04678948.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|239596550|gb|EEQ79086.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
          Length = 236

 Score =  241 bits (617), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 102/230 (44%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E     E        ++ D+  ++  L  K    +E
Sbjct: 6   LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVELSQPDLIVLDVMLPKK--DGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR + 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 SNNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N   ++           IR+  +  +     E+  L  +E  +L YL+  +G+ + +  
Sbjct: 124 VNEVEQSETDDEDIIIDSIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 184 MLNSVWN-YEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|172038873|ref|YP_001805374.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700327|gb|ACB53308.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 252

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 101/234 (43%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL---------QSSAREDVSAIEAF 52
            ++++D  +++D  +    D+G  +   N       L          +    D+  ++  
Sbjct: 21  ILVVEDEDVIRDMIVLALEDEGYEITAVNDGRSALNLLQQEDKNSQATETEFDLLVLDLM 80

Query: 53  LIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L       L++ R++R    + P++ +S   S    +   + G DD + KP   RE++AR
Sbjct: 81  LPQV--NGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVAR 138

Query: 112 VAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             A+ RR  ++N+ +    +   I +++      V  +   L  +E R+LE  M+   + 
Sbjct: 139 CRALIRRQNLTNSSSSSVKQFRDITLYTQECRVTVGEQEISLSPKEYRLLELFMSYPRRV 198

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++ Q+   I+G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 WSRDQLIEQIWGP-DFLGDTKTVDVHIRWLREKLEKDPSQPEYLITVRGFGYRF 251


>gi|218291334|ref|ZP_03495294.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258512228|ref|YP_003185662.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218238780|gb|EED05994.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257478954|gb|ACV59273.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 231

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +      L  +   +++  +  E    L  +   D++ ++  L       L
Sbjct: 3   ILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLP--KMSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R    Q P++ ++   +++  +   D+G DD + KP  ++E+LARV A+ RR  
Sbjct: 61  DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E GP R+  + R     GE   L  +E ++LE  M N  K ++K  I   ++
Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D  V  N VE+++  LRKK+        + + R +GY  
Sbjct: 181 GP-DADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMF 221


>gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 237

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    S           R D+  ++  L        
Sbjct: 14  LLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPD--LDGF 71

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R++R   ++ P++ ++   +    +     G DD V KP    E+ AR+ A+ RR  
Sbjct: 72  EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTA 131

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + +R     + +  +  +    G+   L   E ++L YLM N  + ++K QI   +
Sbjct: 132 TGEQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++N+VES+IS LR+K+ N      + + R +GY +
Sbjct: 192 WN-YDFRGDDNIVESYISYLRRKVDN-TQPRLIHTLRGVGYVL 232


>gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719]
 gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115]
 gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300]
 gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224]
 gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948]
 gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937]
 gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30]
 gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3]
 gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796]
 gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719]
 gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115]
 gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300]
 gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224]
 gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948]
 gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937]
 gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3]
 gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30]
 gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981]
 gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796]
 gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 235

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 8   VVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLP--GRDGME 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 66  VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 125

Query: 123 N--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 126 PAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 186 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 231


>gi|254230838|ref|ZP_04924165.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis C]
 gi|124599897|gb|EAY58907.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis C]
          Length = 250

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 99/217 (45%), Gaps = 12/217 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G                  A  D+  ++  L   G    +
Sbjct: 8   LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLP--GMSGTD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +RA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 66  VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++S+   E+GP+R+  +     V G+   LP +E  +LEYLM N G+ + + Q+   +
Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
           +G  D   +   ++ H+ +LR K+      DP +   
Sbjct: 186 WGA-DYVGDTKTLDVHVKRLRSKIEA----DPANPVH 217


>gi|167761524|ref|ZP_02433651.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704]
 gi|167661190|gb|EDS05320.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704]
          Length = 224

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D + +++  +      G+   GF          +    D+  ++  L   GE  
Sbjct: 1   MIFCVEDDSNIRELVVYTLESTGLKARGFEEGSSFLEALALETPDLVLLDIMLP--GEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL + ++A      +P+I ++   +    +   D+G DD V KP    E+++R+ A+ R
Sbjct: 59  MELLKKLKASPKTRDIPVIMVTAKGAEYDKVMGLDTGADDYVTKPFGMMELVSRIKAVLR 118

Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R      R E     G I +     +    GEV  L  +E  +L+ LM N    + + Q+
Sbjct: 119 RSAREGVRKEDSIVIGEIEMNLKKHEVTAAGEVISLTLKEYELLKRLMKNSNIVLTRDQL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +D   E   V+ H+  LR+KL +    + +++ R +GY +
Sbjct: 179 LEDIWG-YDFDGETRTVDVHVRTLRQKLGSAG--ERIETVRGVGYRM 222


>gi|117928802|ref|YP_873353.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649265|gb|ABK53367.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 227

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V++        +G  +E  +  +    + +  R DV  ++  +   G   LE
Sbjct: 4   LVVDDDPAVRESLRRSLVFNGYDVELADDGQRALAMINMRRPDVVILDVLMP--GLDGLE 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +RA    VP++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  TCRRLRAAGDDVPVLMLTAREAVSDRVAGLDAGADDYLVKPFALEELLARLRALVRRSAP 121

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++ +     + +    R+         L R E  +LE  M +  + + ++QI   ++
Sbjct: 122 GPGASQQLRFSDLTLDLATREVWRGSRPIALTRTEFNLLEMFMRHPRQVLRRSQILEEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N +E ++  LR+KL  +     + + R +GY++
Sbjct: 182 G-YDFPTTANSLEVYVGYLRRKLEAQGEPRLIHTIRGVGYAL 222


>gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
          Length = 234

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++    D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEA-EFPDIVILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR +
Sbjct: 61  LEVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSE 120

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           ++  +             G + +  D    +  G+   L  RE  +L +L  + G+ + +
Sbjct: 121 LAETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY I  N
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDAPSRPEYILTRRGVGYFIKGN 233


>gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 252

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E L  + + D+  ++  L       
Sbjct: 21  ILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIE-LFEAEQPDIIILDLMLPE--IDG 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 78  LEVAKSIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 137

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 138 LVSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 197

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 198 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251


>gi|313890279|ref|ZP_07823913.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121384|gb|EFR44489.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
          Length = 236

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +                + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAIAAFEEGKPDLVILDLMLPE--MDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        N     G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|49481182|ref|YP_036122.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332738|gb|AAT63384.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 254

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 103/223 (46%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +  + +++  + LQ      V  +   ++       
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQI--YEAIDGLDALQKMNEVKVDMVILDIMMPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R + ++P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 253


>gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
          Length = 233

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++  R D+  ++  L       
Sbjct: 4   ILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEA-ERPDILILDLMLPE--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ R IR  S VP+I +S   S    +   + G DD + KP  +RE+ ARV AI RR  
Sbjct: 61  LEVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTD 120

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   + +      G +++ +D    +  GE   L  RE  +L +L  + G+ + + 
Sbjct: 121 LTIENQEAEAAPTEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232


>gi|254824434|ref|ZP_05229435.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|255520946|ref|ZP_05388183.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
 gi|293593670|gb|EFG01431.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
          Length = 228

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + +     +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYDAFFKDEYDIAIIDLMLPN--MDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               + + +  ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATET-KPFLHTVWGVGYKFD 225


>gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus]
          Length = 239

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 12  VVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLP--GRDGME 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 70  VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 129

Query: 123 N--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 130 PAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 189

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 190 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 235


>gi|299536837|ref|ZP_07050144.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727661|gb|EFI68229.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +G +++  +  E           D+  ++  L   G    
Sbjct: 4   ILLIEDEVSIAELQRDYLEINGFTVDIQHHGEDGLQQALKGNYDLIILDIMLP--GISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  DICKQIRAVHNMPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +N+      I + +  R   V GE      +E  +L + + +  + ++K Q++ 
Sbjct: 122 LATHQQTNHMMSIHGITIDTSARKVFVNGEEIAFTTKEFDLLVFFVRHPNQVLSKEQLYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             +G ++ A + + V  HI KLR+K+ R       +++    GY  + 
Sbjct: 182 RNWG-YESAADVSTVTVHIRKLREKIEREPAHPKFLETVWGAGYRFNV 228


>gi|167037940|ref|YP_001665518.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116355|ref|YP_004186514.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856774|gb|ABY95182.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929446|gb|ADV80131.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 224

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++I+D   ++D       ++G  +    + +   E+  ++    +  ++  L        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPD--ISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S+VP++ I+        L  F+ G DD V KP   +E++ARV AI  R   
Sbjct: 63  SLLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYG 122

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++      E   I +    R+  V GE   L  +E  +L+ L+ N+GK V++ +  + ++
Sbjct: 123 ASEEEGKTEYEGISINVSFREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +   V++HI +LR+KL  K     + +   +GY +D
Sbjct: 183 G-YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 222


>gi|317122468|ref|YP_004102471.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592448|gb|ADU51744.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 255

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G+                  R  V  ++  L         
Sbjct: 34  LVVDDEDALLELVAYNLRRNGMEPVLARDGAEALRCIEERRPQVIILDVMLPDT--DGFT 91

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R    Q P++ ++   S    +   + G DD V KP   RE++AR+ A+ RR + 
Sbjct: 92  LCRHLRERGVQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRTEG 151

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R + GPI +   G +    G+   L   E ++L  L +  G+  ++ ++   ++G  
Sbjct: 152 R--RQQVGPIVIDYAGHEVYRDGQRVQLTPTEFKLLATLASEPGRAFSRQELLDRVWGE- 208

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           D   +   V+ H+  LR+KL RN    + + + R  GY ++
Sbjct: 209 DAFGDPRTVDVHVRHLREKLERNPSQPEWILTVRGHGYKLN 249


>gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 240

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 100/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLP--KLDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++   +E            G +++  D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 123 MAAPSSEMKNDEIEGQIVIGDLKILPDHYEAYFKENQLELTPKEFELLLYLGRHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +  + SA++  +D A +  +V+ HIS LR K+ N       + + R LGY ++
Sbjct: 183 RDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLE 234


>gi|295397798|ref|ZP_06807865.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
 gi|294973967|gb|EFG49727.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
          Length = 358

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 102/226 (45%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59
            +++DD A + D   A     G  +  F +L   E L      + D+  ++  L   G  
Sbjct: 134 ILIVDDEASILDIVEAYLSAKGYQV--FRALSGNEALKKVDIVQPDLIVLDLMLP--GLS 189

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+ + IR  S VP+I ++   + +  L+    G DD + KP   +E++ARV  + RR+
Sbjct: 190 GLEVCKKIRDSSTVPIIMLTAKTAEKDILEGLSLGADDYITKPFSPKELVARVETVLRRV 249

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          E G + ++ D +    QGE   L   E  +L  L ++  +  ++ Q+  
Sbjct: 250 QPEYREEKWSFEEGLLVIYPDRKQVFKQGEEIILTPTEYALLALLASHPKRIFSREQLLD 309

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           A+ GL D    + V+++HI  +R+K+ +       + +    GY  
Sbjct: 310 AVKGL-DFDGTDRVIDTHIKNIRQKIEDDTRNPYFILTAYGTGYRF 354


>gi|78213143|ref|YP_381922.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78197602|gb|ABB35367.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 254

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED-VSAIEAFLIGKGEKV 60
            ++++D   +++        +G  +           L ++   D V  I   L+  G   
Sbjct: 27  LLVVEDDDSIRETVGEALRAEGFEVHTCADGASALTLITAGSSDPVDLIVLDLMLPGLGG 86

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R +R  ++  P++ IS   S    +   + G DD + KP   RE++AR  A+ RR 
Sbjct: 87  LDLCRELRRLNNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRS 146

Query: 120 KVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             S       +      + +F         G    L  +E +ILE  + N  +  ++ Q+
Sbjct: 147 SQSETSPSQPHSFTHANLCLFPSECRVTRDGTDLTLSPKEYKILELFIQNPKRVWSRDQL 206

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              I+G+ D   +   V+ HI  LR+K+         + + R  GY  
Sbjct: 207 LEKIWGV-DFIGDTKTVDVHIRWLREKVEQEPSSPQLIRTVRGFGYRF 253


>gi|330684068|gb|EGG95823.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU121]
          Length = 236

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E     E       S++ D+  ++  L  K    +E
Sbjct: 6   LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVESSQPDLIVLDVMLPKK--DGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR + 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N                IR+  +  +     E+  L  +E  +L YL+  +G+ + +  
Sbjct: 124 VNEVEHNETDDEDIIIDSIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 184 MLNSVWN-YEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 252

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E L  + + D+  ++  L       
Sbjct: 21  ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIE-LFEAEQPDIIILDLMLPE--IDG 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 78  LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 137

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     +  +   + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 138 LVSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 197

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 198 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251


>gi|238923834|ref|YP_002937350.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
 gi|238875509|gb|ACR75216.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
          Length = 226

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 106/224 (47%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD + ++         +G  +    + + EE L    ++ D++ +   ++      
Sbjct: 6   ILVVDDESRMRKLVHDFLAREGYEV--LEAGDGEEALDIFYQQKDIALLVLDIMMPRING 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR  S+VP+I ++     +  L+ FD G D+ ++KP   + ++ARV A+ RR  
Sbjct: 64  FEVCREIRQTSKVPIIMLTAKGDERDELNGFDIGADEYISKPFSPKILVARVNALLRRAN 123

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                A   E G I +        + G    L  +E  +L+Y M+N+G  + + +I  ++
Sbjct: 124 KLGKEAVISEAGGIVMDKTAHTVAIDGRNIELSVKEFELLDYFMSNQGIALTRERILDSV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +D   +   +++H+ KLR K+  K   D + +   +GY  +
Sbjct: 184 W-SYDYFGDARTIDTHVKKLRSKMGAKG--DYIKTVWGVGYKFE 224


>gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
 gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
          Length = 230

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G         E        ++ D+  ++  L       +
Sbjct: 6   ILIVEDEETIAGLLEYNLSREGYETLIAEDGEEALIQIEESKPDLIVLDWMLPKV--SGI 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R   +    P+I ++        +   D+G DD V KP    E+ +R+ A+ RR
Sbjct: 64  EVCRRLRMKPETEGIPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLRR 123

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + S        G I++           +   L   E R+L++L+ N G+  ++ Q+ +A
Sbjct: 124 ARPSLIAEAVTCGDIQIDRAAHRVRRGEKEVHLGPTEFRLLDHLIQNPGRVFSREQLLNA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  VE   V+ HI +LRK L      +P+ + R  GY+++
Sbjct: 184 VWG-SDVFVEARTVDVHIGRLRKALNAHGHQNPIRTVRSAGYALE 227


>gi|322834089|ref|YP_004214116.1| two component transcriptional regulator PhoB, winged helix family
           [Rahnella sp. Y9602]
 gi|321169290|gb|ADW74989.1| two component transcriptional regulator PhoB, winged helix family
           [Rahnella sp. Y9602]
          Length = 229

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +           ++  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQAVEAEDFDSAIGQLVEPYPELILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +   ++P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         +   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIDMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHSERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDRMIQTVRGTGYRF 225


>gi|225868178|ref|YP_002744126.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701454|emb|CAW98586.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 236

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 102/233 (43%), Gaps = 18/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  ++  F+  E    +    + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEA-VAVFEEEKPDLIILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 V------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                         +     G +++  D    +  G+   L  RE  +L +L  + G+ +
Sbjct: 121 TIETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|289178119|gb|ADC85365.1| YycF [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 255

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +     +G    G  + E    L      D+  ++  L   G    
Sbjct: 24  ILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLMLP--GISGT 81

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            L R +    +VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 82  TLCRRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLE 141

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++     GPI +     +  + GE+   P +E  +LEYLM N+G+ + + Q
Sbjct: 142 PRASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQ 201

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G  D   +   ++ H+ ++R K+  +      + + R LGY I
Sbjct: 202 LIGRVWG-SDYVGDTKTLDVHVKRIRAKIEADPSNPALLTTVRGLGYRI 249


>gi|291534209|emb|CBL07322.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Megamonas hypermegale
           ART12/1]
          Length = 231

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 101/231 (43%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   V++  I      G   +GF + E    +  +   D+  ++  L   G   +
Sbjct: 4   IYCVEDDESVRELVIYALQSSGFEAQGFVNAEEFFPVLKNNVPDLILLDIMLP--GIDGI 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + +R + +    P+I ++   S    +   D+G DD V KP    E++AR+ A+ RR
Sbjct: 62  EILKEVRKNPKTQHTPIIMLTARGSEYDKITGLDNGADDYVTKPFGVMELIARIKAVLRR 121

Query: 119 L---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       ++  A  G + +  D     V  E   L  +E  +L YL+ N+   ++
Sbjct: 122 SAKINVAQDKATNDLSASNGLLVLNHDFHKVYVNNEEVILTLKEFELLYYLLKNKNIVIS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +I   ++  ++ A E   V+ HI  LR KL   +    +++ R +GY I
Sbjct: 182 RDKIMDEVWD-YNYAAETRTVDVHIKTLRHKLG--VASKLIETIRGVGYKI 229


>gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 229

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G  +    +         +A  D+  ++  +        
Sbjct: 5   ILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAEPDLVVLDVMMPQV--DGF 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   S VP++ ++    ++  +   D G DD + KP    E+LARV A+ RR  
Sbjct: 63  EVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKT 122

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  NR     +++ ++ R+    G+   L  +E  +L   M N  + +++  I   
Sbjct: 123 EQQDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G +D + E NV+E +I+ LR+K     G   + + R  GY +
Sbjct: 183 IWG-YDYSGESNVLEVYIAMLRQKTEQDGGKRLIRTIRGAGYIL 225


>gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
 gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
          Length = 235

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 106/235 (45%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E L  + + D+  ++  L       
Sbjct: 4   ILVVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIE-LFEAEQPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 121 VS-----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++           +   + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LASVDSQETDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435]
 gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR
 gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435]
          Length = 233

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 6   VVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLP--GRDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 64  VCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +  + N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 124 PAQEVSGTTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229


>gi|315037328|ref|YP_004030896.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325955796|ref|YP_004286406.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|312275461|gb|ADQ58101.1| putative response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325332361|gb|ADZ06269.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|327182633|gb|AEA31080.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 102/231 (44%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++   + + EE +Q     D   +   L+   +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVD--TAYDGEEAVQKVDEYDPDLMILDLMLPKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +  +   + G + +  D    E  G+   L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAANQEEPDKNIKIGNLLIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  + +LR+K+  N +    + ++R +GY +
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIENNPIQPQVLVTRRGVGYYV 232


>gi|306823610|ref|ZP_07456985.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309802985|ref|ZP_07697086.1| sensory transduction protein RegX3 [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553317|gb|EFM41229.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308220452|gb|EFO76763.1| sensory transduction protein RegX3 [Bifidobacterium dentium
           JCVIHMP022]
          Length = 234

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 104/230 (45%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    +   E+ L+   +  V  +   L+  G    
Sbjct: 4   ILIVEDEESYREPLVYQLTREGYDVSA--AATGEDGLELFTQGGVDLVLLDLMLPGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LARV A+ RR ++
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARVRAVLRRNQM 121

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 VAESDSASDDDIPLVCGDISMKIGQHEVSVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 240

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 100/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLP--KLDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++   +E            G +++  D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 123 IAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +  + SA++  +D A +  +V+ HIS LR K+ N       + + R LGY ++
Sbjct: 183 RDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIENNTKKPVYIKTIRGLGYKLE 234


>gi|83814805|ref|YP_446586.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294508518|ref|YP_003572577.1| response regulator DrrA [Salinibacter ruber M8]
 gi|83756199|gb|ABC44312.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294344847|emb|CBH25625.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 245

 Score =  241 bits (616), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D       D G +++     +       +   D+  ++  L   G    
Sbjct: 9   ILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLP--GTDGF 66

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R      P++ ++        +   + G DD + KP   RE+LARV A++RR++
Sbjct: 67  DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V             E G + V  + R   V+GE   L  +E  +L     + G+  ++ +
Sbjct: 127 VDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDE 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G +  +   + V +HI++LR K+  +      V +   +GY  
Sbjct: 187 LLDEVWG-YQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234


>gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 225

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G  +   +           A  D+  ++  L   G   +
Sbjct: 5   ILIIEDELEIANYLRRGLILEGFQVSVAHDGPQGLEFAREAAHDLVVLDLMLP--GIDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA S VP+I ++   S+   +   ++G DD + KP    E+LAR+    RR + 
Sbjct: 63  EVARRLRAASDVPIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQLRRRQS 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +      + + +  R+  +      L  +E  +L+  M +  + + +  I+  ++G
Sbjct: 123 AQQSDILRFANLTLDTAARELRIGDRRIDLTAKEYDLLDLFMRHPNQVLTREVIYDRVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E N++E ++  LR+KL    G   + + R  GY +
Sbjct: 183 -YDFGGESNIIEVYVRYLRQKLEAGGGSRVIQTVRGAGYIL 222


>gi|229184192|ref|ZP_04311401.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228599307|gb|EEK56918.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 228

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 126 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 227


>gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
 gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
          Length = 235

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E  ++  + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LVSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|196047031|ref|ZP_03114250.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022135|gb|EDX60823.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 225

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 224


>gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 238

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 11  VVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLP--GRDGME 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 69  VCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 128

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +  ++N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 129 PAQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 189 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 234


>gi|224477938|ref|YP_002635544.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422545|emb|CAL29359.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 233

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 6   VVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAIDLIYEEEPDIVLLDIMLP--GRDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 64  VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRRYTQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + N      I ++ D    + +G+   L  RE  +  YL  + G+ + +  + 
Sbjct: 124 PAQEADNAPNEITIKDIVIYPDAYSIKKRGKDIELTHREFELFHYLANHMGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229


>gi|326772505|ref|ZP_08231789.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
 gi|326637137|gb|EGE38039.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
          Length = 243

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSARE------DVSAIEAFLI 54
            +L++D    +D        DG  + E  +     E  ++S R       D+  ++  L 
Sbjct: 10  ILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLMLP 69

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                   +   IR  S VP+I ++   +    +   + G DD V KP  +RE+LAR+ A
Sbjct: 70  R--LDGTGVCTRIRRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 127

Query: 115 IYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + RR + +    E     G +R+  +  +  V GEV  +P RE  +LE  + + G+ + +
Sbjct: 128 VLRRSRAAAPEPEPVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTR 187

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +QI   ++G  D   +   ++ HI +LR ++  +      + + R LGY +D
Sbjct: 188 SQILERLWGP-DYEGDTKTLDVHIKRLRGRIEVDASKPVLITTVRGLGYRLD 238


>gi|220930753|ref|YP_002507662.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220001081|gb|ACL77682.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 230

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  ++E ++  E    L  S   D+  ++  L       
Sbjct: 5   ILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVN-LALSQSPDLILLDIMLP--KMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             + R +R     P++ ++        +   + G DD + KP   RE++ARV A  RR+ 
Sbjct: 62  FTVCRKLRQSISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRMI 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +N+  + G + + +D  + +   E   L  RE  ++++L A +G   ++  + 
Sbjct: 122 PGEQPVSNNSVNQYGDLTIDTDRYEVKRGEETIELTLREFELVKFLAAQQGTIFSRETLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G ++   +   V+  + ++R+KL  +      + +KR +GY  +
Sbjct: 182 EKVWG-YEYYGDVRTVDVTVRRVREKLEKDPANPQYIVTKRGVGYYFN 228


>gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 226

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++  G       D + ++     +       +   D+  ++  L        E
Sbjct: 6   LVVDDEKVIVKGIKFSLEQDDIIVDCAYDGQEALDKARANEYDIILLDVMLPI--MTGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQQIREFSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRASKN 123

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G +++  + R   V  +   +  RE  +LE L +N GK  ++ ++ + I+G
Sbjct: 124 ADSKDVISYGDLKLNEEYRRVFVGSKEINVTSREYELLELLASNPGKVYSREELLTTIWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +   +   V+ HI +LR+KL  N      V +K   GY  
Sbjct: 184 T-EYPGDVRTVDVHIRRLREKLESNPSEPRYVRTKWGSGYYF 224


>gi|126658415|ref|ZP_01729564.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620347|gb|EAZ91067.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 252

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 103/234 (44%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---------EFEEWLQSSAREDVSAIEAF 52
            ++++D  +++D  +    D+G  +   N+          E +    +    D+  ++  
Sbjct: 21  ILVVEDEDVIRDMIVLALEDEGYDITAVNNGRSALNLLQEENKNAKVTETEFDLLILDLM 80

Query: 53  LIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L       L++ R++R    + P++ +S   S    +   + G DD + KP   RE++AR
Sbjct: 81  LPQV--NGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVAR 138

Query: 112 VAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             A+ RR  ++N+ +    +   I +++      V  +   L  +E R+LE  M+   + 
Sbjct: 139 CRALIRRQNLTNSSSSSVKQFRDIILYTQECRVTVGEQEIALSPKEYRLLELFMSYPRRV 198

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++ Q+   I+G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 WSREQLIEQIWGP-DFLGDTKTVDVHIRWLREKLEQDPSQPEYLITVRGFGYRF 251


>gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis]
          Length = 238

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +   ++     E    L       +  ++  +       +E
Sbjct: 7   LIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMP--KIDGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R H+ VP++ ++        +     G DD + KP    E+LAR+ A+ RR    
Sbjct: 65  VCRRMRNHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFLVL 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +  +   + +          G+   L  +E  +L++  +N G+   KTQ+F
Sbjct: 125 GSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              +       ++N V  HI +LRKK+  +      + +   +GY  
Sbjct: 185 RNAW-SDQYIEDDNTVMVHIRRLRKKIEPDPSDPQFIQTVWGIGYKF 230


>gi|255658536|ref|ZP_05403945.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
           20544]
 gi|260849340|gb|EEX69347.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
           20544]
          Length = 230

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G   E   +             D+  ++  L   G   +
Sbjct: 7   IFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLP--GMDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S +P+I ++    ++  +   D G DD + KP    E++AR+    R+   
Sbjct: 65  TICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVP 124

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N       R +   + ++    + EV GE   L ++E  +LEY+M N+   + + QI  
Sbjct: 125 DNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++G +D + + NVV+ +I  LR KL ++     + + R +GY
Sbjct: 185 KVWG-YDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGY 226


>gi|327439249|dbj|BAK15614.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 236

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G  +   +  +           D+  ++  L       +E
Sbjct: 6   LVVEDEMPIATLLKYNLEQAGFDVLLAHDGQAGLDTAVEQSPDLILLDLMLP--KLDGVE 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + + +R     +P+I ++        +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 64  VCKELRRLRINIPIIMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAVLRRFSG 123

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++ S      G ++VF +  +  +  E      +E  +L YL+ N+ + + + Q
Sbjct: 124 PVVEETVESSEVVYTFGNLKVFPERFEAFIDDESLEFTPKEFELLVYLLENKNRVLTRDQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           + SA++  +D A +  +V+ HIS LR K+         + + R LGY  +
Sbjct: 184 LLSAVWN-YDFAGDTRIVDVHISHLRDKIEENSRKPLYIKTIRGLGYKFE 232


>gi|302541878|ref|ZP_07294220.1| DNA-binding response regulator ResD [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459496|gb|EFL22589.1| DNA-binding response regulator ResD [Streptomyces himastatinicus
           ATCC 53653]
          Length = 262

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 88/235 (37%), Gaps = 20/235 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G +++             +   D+  ++  L   G   L+
Sbjct: 11  LVVDDDPTVAEVVAGYLTRAGFAVDRAADGPGALARADAQWPDLVVLDLMLP--GMDGLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    VP+I ++        +   + G DD V KP   RE++ RV ++ RR +  
Sbjct: 69  VCRALRGKGPVPVIMLTARGDEDDRILGLEIGADDYVTKPFSPRELVLRVESVLRRGRTG 128

Query: 123 ---------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                          +       I +    R     G    L  RE  +L +L+ + G  
Sbjct: 129 PRASAGVRSHAPERPDPVLRRAGITLDPTARRATKDGRELALTLREFDLLAFLLRHPGVA 188

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
             + ++   ++G   +  + + V  H+ +LR K+ +       + +   +GY  D
Sbjct: 189 CTREELMRDVWGW--DFGDLSTVTVHVRRLRGKIEDDPAAPRLIQTVWGVGYRFD 241


>gi|227498819|ref|ZP_03928959.1| DNA-binding response regulator [Acidaminococcus sp. D21]
 gi|226904271|gb|EEH90189.1| DNA-binding response regulator [Acidaminococcus sp. D21]
          Length = 229

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 13/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++I+D   + +        +G  ++  F  L  ++   SS   D+  ++  L   GE   
Sbjct: 5   LIIEDDKGIAELERDYLEANGFEVQMAFTGLSGKKAALSS-PVDLILLDIMLP--GEDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IRA   +P++ +S        +     G DD + KP    E++ARV +   R + 
Sbjct: 62  QVCREIRAEKDIPILMVSARQEDIDKIRGLGLGADDYIVKPFSPTELVARVKSHISRYEQ 121

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             NR          G + +        +Q +   LP +E  +L +L  N G   +K  +F
Sbjct: 122 LTNRESSRPQVLRCGNLVIDLSSHQVFLQDKEILLPNKEFELLAFLAKNPGIVFSKDTLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G  D   + + V  HI+++R+K+         +++    GY  
Sbjct: 182 ERVWGE-DSLGDTSTVSVHINRIREKIEEDSSKPYYIETVWGAGYRF 227


>gi|288905747|ref|YP_003430969.1| essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|306831845|ref|ZP_07465001.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978780|ref|YP_004288496.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732473|emb|CBI14045.1| conserved essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304426043|gb|EFM29159.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178708|emb|CBZ48752.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 236

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G   E   + +  E +     ED   I   L+      L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGY--ETVTAFDGREAITKFEEEDPDLIILDLMLPELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       SN+    G +++  D    + +GE   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11]
          Length = 219

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++     + ++ L  +       I   L+      L
Sbjct: 4   ILIVEDEQNLARFLELELTHENYNVD--TEYDGQDGLDKALIHYYDLIILDLMLPSINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR + 
Sbjct: 62  EICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  +     V G    L + E  +L  L  N+   + + QI + ++G +
Sbjct: 121 QKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218


>gi|52143461|ref|YP_083367.1| response regulator [Bacillus cereus E33L]
 gi|51976930|gb|AAU18480.1| response regulator [Bacillus cereus E33L]
          Length = 254

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 253


>gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 231

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   V+D         G  +E   + LE    L ++   D   ++  +       
Sbjct: 5   ILVVDDDQAVRDSLARSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVMMPR--LDG 62

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE  +++RA+ + VP++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 63  LETTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRALTRRS 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +N       + +    R+    G    L R E  +L+  M + GK + ++ + +
Sbjct: 123 RPESQQANEVLSFADMTLDPQTREVTRGGRRISLTRTEFALLQTFMEHPGKVLDRSWLLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD     N +E +I  LR+K   +     + + R +GY +
Sbjct: 183 EVWG-FDFPATANSLEVYIGYLRRKTEQEGEPRLIHTVRGVGYVL 226


>gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132]
 gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819]
 gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1]
 gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR
 gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR
 gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR
 gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR
 gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR
 gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR
 gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR
 gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR
 gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR
 gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR
 gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR
 gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR
 gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR
 gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR
 gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR
 gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus]
 gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819]
 gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00]
 gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 233

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 6   VVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLP--GRDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 64  VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123

Query: 123 N--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 124 PAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229


>gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL N1-067]
          Length = 236

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPE--MDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R +   VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  +  +  +  ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEVIEENTDEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233


>gi|238795585|ref|ZP_04639100.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           mollaretii ATCC 43969]
 gi|238720704|gb|EEQ12505.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           mollaretii ATCC 43969]
          Length = 239

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 15  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLP--GGSGI 72

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 73  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALEMGPTEFKLLHFFMTHPERVYSREQLLNY 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALEVDGHDRMVQTVRGTGYRF 235


>gi|239636841|ref|ZP_04677840.1| transcriptional regulatory protein ResD [Staphylococcus warneri
           L37603]
 gi|239597515|gb|EEQ80013.1| transcriptional regulatory protein ResD [Staphylococcus warneri
           L37603]
          Length = 241

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 100/234 (42%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  S E   + + +E  Q +   D + I   L+      +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERE--SFETHEARDGKEAYQLAMENDYACILLDLMLPEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 63  EVATQLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQT 122

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +  E   + + +D        E   L  +E  +L YL     K   + Q
Sbjct: 123 TTPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD---PVDSKRFLGYSIDWN 223
           +   ++  ++   +   V++H+ +LR+KL NK+  D    + +   +GY  + N
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKL-NKVSSDAAHMIQTVWGVGYKFEVN 234


>gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 242

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +           L      D+  ++  L        
Sbjct: 12  LLVVDDEPNIRELLATSLRFAGFEVHAAADGTSALRLARDTHPDLVVLDVMLPD--MDGF 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R   + VP++ ++        +     G DD V KP    E++AR+ AI RR  
Sbjct: 70  SVTRRLREKGEHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTA 129

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ++      + +  D  +    G    L   E ++L YLM N  + ++K+QI   
Sbjct: 130 PDEGADSSVLRYADLELDDDTHEVRRAGHPVELSPTEFKLLRYLMLNPQRVLSKSQILDH 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           ++  +D   + N+VES+IS LR+K+      D       + ++R +GY +
Sbjct: 190 VW-QYDWGGDANIVESYISYLRRKIDQLTDADGRRLPPLIHTRRGVGYLL 238


>gi|152975591|ref|YP_001375108.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024343|gb|ABS22113.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 232

 Score =  241 bits (616), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G   + + + + +E LQ  +  ++  +   ++      L
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGY--DIYKAYDGDEALQMLSMYEIDLMILDIMMPKRNGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R H+  VP++ +S        +    +G DD + KP +  E++ARV A+ RR  
Sbjct: 63  EVCQQVREHNNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELMARVKALLRRSS 122

Query: 121 VSNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                ++           I +       +V GE   L   E  IL  L +N G+  +  +
Sbjct: 123 FQQTISQVNEDGMIRIRSIEIHKHNHTVKVNGENIKLTSIEFDILYLLASNTGRVFSSEE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           IF  ++   D       V  HIS LR KL   +  +  + +   +GY I+
Sbjct: 183 IFERVWNE-DGYGSNKTVMVHISNLRDKLETGINTEKIIHTVWGVGYKIE 231


>gi|302557641|ref|ZP_07309983.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
           Tu4000]
 gi|302475259|gb|EFL38352.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
           Tu4000]
          Length = 242

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +         G  ++            ++   D+  ++  L   G   LE
Sbjct: 15  LVVDDDPTVAEIVTGYLDRAGYVVDRAGDGPGALARAAAHWPDLVVLDLMLP--GMDGLE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R    VP+I ++        +   + G DD V KP   RE++ RV ++ RR +  
Sbjct: 73  VCRRMRGRGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRPA 132

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++       + V    R    +G    L  RE  +L + + + G+  A+ ++   ++
Sbjct: 133 PAAASGPLRAAGLAVDPAARRATKRGAELALTVREFDLLAFFLRHPGRAFAREELMREVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G   +  + + V  H+ +LR K+ +       V +   +GY  D
Sbjct: 193 GW--DFGDLSTVTVHVRRLRGKVEDDPARPRLVQTVWGVGYRFD 234


>gi|30260446|ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525530|ref|YP_016879.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183288|ref|YP_026540.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|52144971|ref|YP_081859.1| response regulator [Bacillus cereus E33L]
 gi|118476026|ref|YP_893177.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165873352|ref|ZP_02217952.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634226|ref|ZP_02392548.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640090|ref|ZP_02398357.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170687705|ref|ZP_02878920.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709229|ref|ZP_02899651.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177655756|ref|ZP_02937031.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567377|ref|ZP_03020291.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196041101|ref|ZP_03108397.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046240|ref|ZP_03113467.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|227812937|ref|YP_002812946.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228925516|ref|ZP_04088608.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931762|ref|ZP_04094662.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944068|ref|ZP_04106450.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229119926|ref|ZP_04249183.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229182659|ref|ZP_04309903.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229600613|ref|YP_002864895.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686665|ref|ZP_05150523.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724733|ref|ZP_05186516.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254735437|ref|ZP_05193145.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744181|ref|ZP_05201863.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756033|ref|ZP_05208064.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761683|ref|ZP_05213701.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253767|gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500678|gb|AAT29354.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177215|gb|AAT52591.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|51978440|gb|AAU19990.1| response regulator [Bacillus cereus E33L]
 gi|118415251|gb|ABK83670.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164710909|gb|EDR16486.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511901|gb|EDR87280.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530540|gb|EDR93255.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125862|gb|EDS94767.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170668232|gb|EDT18980.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172079985|gb|EDT65087.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561504|gb|EDV15475.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196022985|gb|EDX61665.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028036|gb|EDX66647.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227003315|gb|ACP13058.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228600828|gb|EEK58404.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228663540|gb|EEL19123.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228815618|gb|EEM61857.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827911|gb|EEM73645.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834154|gb|EEM79699.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229265021|gb|ACQ46658.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 233

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   IR   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKIREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|16331756|ref|NP_442484.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001717|dbj|BAA10554.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 262

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-------SAREDVSAIEAFLI 54
            ++++D   +++  +    ++G  +   +       L          A  D+  ++  L 
Sbjct: 33  ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92

Query: 55  GKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R +R      P++ +S   S    +   + G DD + KP   +E++AR  
Sbjct: 93  QV--NGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCR 150

Query: 114 AIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR  ++ N      +   + ++       ++GE   L  +E R+LE  M+   +  +
Sbjct: 151 AMIRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWS 210

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   I+G+ D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 211 REQLIEHIWGI-DFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261


>gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 235

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E L  + + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIE-LFEAEQPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LVSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|229028114|ref|ZP_04184260.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228733205|gb|EEL84041.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 233

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+   + +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEKNEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|225017711|ref|ZP_03706903.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
           DSM 5476]
 gi|224949504|gb|EEG30713.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
           DSM 5476]
          Length = 232

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  F               D++ ++  +   G    
Sbjct: 5   ILVVDDEKEIADLVELYLKNENYEIYKFYDPLQALACIEEQPVDLAILDVMMP--GMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            L   IR     P++ ++        +     G DD + KP H  E++ARV A  RR   
Sbjct: 63  ALCAKIRDKYTFPVLMLTAKVEDIDKITGLTIGADDYITKPFHPLEMVARVKAQLRRYTC 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K ++   E   + +  D     + G+  PL   E  IL  L  N GK ++  Q+
Sbjct: 123 YNEGRQKQNSAVIELHGLVIDKDTHTCSLYGKQLPLTPTEFSILWLLCENCGKVISSEQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  I+G        N V  HI ++R+K+         + +   +GY I+
Sbjct: 183 FHEIWGEKYFESSNNTVMVHIRRIREKMNEPARNPKFIQTVWGVGYKIE 231


>gi|167765588|ref|ZP_02437652.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
 gi|167712773|gb|EDS23352.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
          Length = 226

 Score =  241 bits (616), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 105/223 (47%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD + ++          G  +    + + EE + +      ++ +   ++      
Sbjct: 6   ILVVDDESRMRKLVKDFLTRAGYQV--LEAQDGEEAVDTFYSIKGINLLVLDVMMPKMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ + IR  S+VP+I ++     Q  L  F+ GVD+ ++KP   + ++ARV AI RR  
Sbjct: 64  WEVVKEIRKVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRTV 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    + E G I +   G    + G+   L  +E  +L+Y M+N+G+ + +  I + ++ 
Sbjct: 124 QTEGEQIEAGGIVMDVGGHHVSIDGKSINLSYKEFELLQYFMSNQGRALTRESILNQVWN 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR KL  K     + +   +GY  + 
Sbjct: 184 -YDYFGDARTIDTHVKKLRNKLGEKGS--YIHTIWGMGYKFEV 223


>gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
 gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
          Length = 235

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E L  + + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIE-LFEAEQPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 IVSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
 gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++     E    +      D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGLRFSLEQDDMEVDCAYDGEEALEMVKRKEYDMILLDVMLP--KYDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R IR  S VP+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCRQIRDFSDVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIMRRVAKK 123

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +  S      G +++  + R          L  +E  +LE L  N  K  ++  + + 
Sbjct: 124 DGMSASGKVVVKGDLKIDCESRRVFSGDRELNLTAKEFDLLELLAMNPNKVYSRESLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIEVNPSDPKYVYTKWGVGYYF 227


>gi|254442621|ref|ZP_05056097.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256929|gb|EDY81237.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 239

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 105/220 (47%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + D  +    + G  +E     E      +S   DV  ++  L   G   L 
Sbjct: 20  LLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLP--GRDGLS 77

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP+I ++    L   L+  + G DD + KP +  E++AR+ A++RR   
Sbjct: 78  ILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSSG 137

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  + G + V    R+    GE+  L  RE  +LEYLM + G+ + +TQI   ++G 
Sbjct: 138 KSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG- 196

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     NVV+  + +LRKK+        +++ R  GY +
Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRM 236


>gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional
           regulatory protein phoP
 gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis]
 gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 240

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 100/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLP--KLDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++   +E            G +++  D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 123 IAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +  + SA++  +D A +  +V+ HIS LR K+ N       + + R LGY ++
Sbjct: 183 RDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLE 234


>gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 229

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G  +    +         +A  DV  ++  +        
Sbjct: 5   ILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAEPDVVVLDVMMPQV--DGF 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   S VP++ ++    ++  +   D G DD + KP    E+LARV A+ RR  
Sbjct: 63  EVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKT 122

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  NR     +++ ++ R+    G+   L  +E  +L   M N  + +++  I   
Sbjct: 123 EQQDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G +D + E NV+E +I+ LR+K     G   + + R  GY +
Sbjct: 183 IWG-YDYSGESNVLEVYIAMLRQKTEQDGGKRLIRTIRGAGYIL 225


>gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 110/226 (48%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD   ++         D ++++GF  +E  +  ++      ++D++ I   ++   
Sbjct: 6   ILVVDDEPRMRK-----LVKDFLTVKGFQVVEAGDGEEAIDIFFEQKDIALILLDVMMPK 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+ + IR +SQVP++ ++     Q  L  F  GVD+ ++KP   + ++ARV AI R
Sbjct: 61  MDGWEVLKTIRKYSQVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILR 120

Query: 118 RLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    + +  + G I +       E+ G+   L  +E  ++ Y   N+G  +++ +I + 
Sbjct: 121 RSSPGAKDVIDVGGIHIDKTAHQVEIDGKPVDLSYKEFELMTYFAENQGIALSREKILNN 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++  +D   +   +++H+ KLR KL  K   + + +   +GY  + 
Sbjct: 181 VWN-YDYFGDARTIDTHVKKLRSKLGEKG--EYIKTIWGMGYKFEV 223


>gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
 gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
          Length = 237

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D       ++G  +    + + +E L     EDV  +   ++      +
Sbjct: 11  ILVADDEKEIRDLLEIYLLNEGYKV--VKAKDGQEALDIIENEDVDLLVLDIMMPKVNGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R +  +P++ +S        +    +G DD + KP +  E   RV A+ RR   
Sbjct: 69  EVCKKVRQNKNMPILMLSAKSEDMDKIQGLMTGADDYMTKPFNPLEFTVRVKALLRRSYY 128

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            NN            G + +          GE   L  RE  IL  + +N+G+  +  +I
Sbjct: 129 LNNNNSSEESDLINVGSLTIDKTRHRVVADGEEISLTAREFDILYLMASNKGRVFSSEEI 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++         N V  HIS+LR KL   L G   + +   +GY I+
Sbjct: 189 FEKVWKEK-YFQSNNTVMVHISRLRDKLDKHLNGEKIIHTVWGVGYKIE 236


>gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
 gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
          Length = 240

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D         G ++   ++ +         + D+  ++  +   G   L
Sbjct: 13  ILIVDDEAAIRDMLSIALEAAGFNVLQADNAQQAHASIIDNQPDLVLLDWMMP--GTTGL 70

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     ++ P+I ++      + +   DSG DD + KP   RE+++RV A+ RR
Sbjct: 71  ELLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISRVNAVLRR 130

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G +     G    + GE   L   E R+L++ + ++ +  ++ QI   
Sbjct: 131 IGREALKEPISIGELIFDPLGHRVSIAGEPINLGPTEYRLLQFFLTHQERVYSRGQILDY 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  ++E  V+ HI +LRK +      + V + R  GY  
Sbjct: 191 VWGG-NVYLDERTVDVHIRRLRKAISVAGHENYVQTVRGAGYRF 233


>gi|90414588|ref|ZP_01222561.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum 3TCK]
 gi|90324304|gb|EAS40873.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum 3TCK]
          Length = 229

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G       + ++++ L+         I    +  G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQP--IEAEDYDDALEKICEPYPELILMDWMLPGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + ++      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  NLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  ++  +   +++           E   +   E ++L + M ++ +  ++ Q+ + 
Sbjct: 123 VSPTSLDDVIDVQGLKLDPVSHRVTTNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEAGGHDKMVQTVRGAGYRF 225


>gi|315282416|ref|ZP_07870834.1| transcriptional regulatory protein SrrA [Listeria marthii FSL
           S4-120]
 gi|313613939|gb|EFR87665.1| transcriptional regulatory protein SrrA [Listeria marthii FSL
           S4-120]
          Length = 228

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +   ++     + +   ++  ++D       L+      +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKE--EIDATFVHDGKLGYETFFKDDYDIAIIDLMLPNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               + + +  ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 AAPAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATET-KPFLHTVWGVGYKFD 225


>gi|228938514|ref|ZP_04101122.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228821112|gb|EEM67129.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 203

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 12/202 (5%)

Query: 28  GFNSLEFEEWLQSSAR-----EDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           G+   E E   ++  +      D   ++  +       L + + IR  S VP+I ++   
Sbjct: 7   GYEWGEAENGKEALKKLETDHYDFVVLDIMMPE--MDGLSVCKEIRKTSDVPIIFLTAKG 64

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDP 140
                ++    G DD + KP    E++AR+ A+ RR   +      + GPI +    R  
Sbjct: 65  EEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQEQQEEIQFGPILINEKSRRI 124

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           E  GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A     V++H+  +R K
Sbjct: 125 EADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYAGSTRTVDTHVKTMRLK 183

Query: 201 LRNKLGFDPVDSKRFLGYSIDW 222
           L      + + +   +GY  + 
Sbjct: 184 LGESG--NYIQTVWGVGYKFEV 203


>gi|187778876|ref|ZP_02995349.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
 gi|187772501|gb|EDU36303.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       +      +    + D+  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLENNGYECICALNGIDALNIVKEEKPDLVLLDLMLP--GMDGY 63

Query: 62  ELPRIIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + IR  + +    +I I+        +   + G DD + KP   RE++ARV A+ RR
Sbjct: 64  DVCKEIRKDNNIATTSIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               N  +++   G I +  +      +G+   L  +E  +LE L+ N+GK + +  +  
Sbjct: 124 RTTINIESKSYVLGNIVIDFEKHSLTKEGKKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            I+G ++   E   V+ HI  LRKK+ +       +++ R +GY  +
Sbjct: 184 TIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKYIETIRGIGYRFN 229


>gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 222

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G     F + + +E L+         I   ++  G+   
Sbjct: 4   ILIVDDDTHMRALVKTYAEIEGYLC--FEASDGKETLEKLTNHSFDLILLDVMMPGKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR     P+I I+        L  F+ G DD + KP   +E++AR+ A+ +R   
Sbjct: 62  QTLSEIRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +   G + V        ++G   PL  +E  +L YL  N    +++  I   ++G 
Sbjct: 122 FQFEKIVYGDLEVNVFSHTVTIKGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           FD   +   V++HI  LR++L +    + + +   +GY  D+
Sbjct: 181 FDYFGDTRTVDTHIKSLRERLGDY--RELIQTVWGVGYKFDY 220


>gi|289168019|ref|YP_003446288.1| response regulator [Streptococcus mitis B6]
 gi|288907586|emb|CBJ22423.1| response regulator [Streptococcus mitis B6]
          Length = 235

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 104/235 (44%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E  ++  + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ + IR  S VP+I +S   +    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDTEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LVSVDNQESDEKKTQPLQFGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 230

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G ++    +             D+  ++  L        
Sbjct: 7   ILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDLIILDVMLPD--MNGF 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA     P++ ++     +  +     G DD V KP    EI+AR+ AI RR  
Sbjct: 65  GVTKRLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 124

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++       G + +  D  +  V  E   L   E ++L YLM N  + ++K QI   ++
Sbjct: 125 HADEDAIIRAGELTMDQDTHEVLVGEEPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   +  +VES+IS LR+KL        + +KR  GY +
Sbjct: 185 -EYDFNGDAGIVESYISYLRRKLDQHSSEPVIQTKRGFGYML 225


>gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 219

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG  ++     + E  L+ +   D   I   L+      L
Sbjct: 4   ILIVEDEQNLARFLELELTHDGYKVDI--EYDGEPGLEKALNNDFDLIILDLMLPNINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I I+        +   D G DD + KP    E+ AR+ A+ RR + 
Sbjct: 62  EICRRVRQVQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   IR+  D     V G+     + E  +L  L  NR   + + QI + ++G +
Sbjct: 121 HKDIIDINGIRIDIDAFKVTVDGKQLDFTKTEYDLLYLLATNRNHVLQREQILNHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKVIETVRGVGYVI 218


>gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
          Length = 219

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++     + ++ L  +       I   L+      L
Sbjct: 4   ILIVEDEQNLVRFLELELTHENYNVD--TEYDGQDGLDKALSHYYDLIILDLMLPSINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR + 
Sbjct: 62  EICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  +     V G    L + E  +L  L  N+   + + QI + ++G +
Sbjct: 121 QKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218


>gi|150390957|ref|YP_001321006.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950819|gb|ABR49347.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 225

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         + VS+      +    L    + D+  ++  L        
Sbjct: 6   ILLVEDEKNLRKLVATYLKKEMVSVIEAADGKEALVLWEEEQYDLIIVDIMLPE--YDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + + IR  S VP++ ++        L  FD GVDD + KP   +E++ARV A+ +R   
Sbjct: 64  TICKRIREKSNVPILILTARSEEHDKLFGFDLGVDDYMTKPFSVKELVARVKALLKRSNR 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++S        ++V   G    +QGE   L  +E  +L   + N+ + +++  I   ++G
Sbjct: 124 QLSTETLIVQGLKVDKKGHQVFLQGERLMLTPKEYDLLLIFLHNQNQALSREVILDGVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V++H+ +LR KL+       + + R LGY  + 
Sbjct: 184 -YDYYGDLRTVDTHVKRLRHKLKEMGEQ--IKTVRGLGYRFEV 223


>gi|225728859|ref|YP_002735123.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113533|emb|CAR41322.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 236

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 101/233 (43%), Gaps = 18/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G   +  F+  E     +   + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGKEAVLAFE-EEKPDLVILDLMLPE--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 ------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                         +     G +++  D    +  G+   L  RE  +L +L  + G+ +
Sbjct: 121 TIESAVAEENASAGSQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 239

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G  +    + + EE L+     DV      ++  G    
Sbjct: 6   ILVIDDEPSIVELLSFNLKKEGYDV--LKAYDAEEALKIVEDNDVDMFIVDIMLPGMDGF 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R    H   P+I +S        +   + G DD + KP   RE LAR+ AI+RR
Sbjct: 64  ELVRNLRSTEKHRHTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREALARIRAIFRR 123

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++ S         +     + + ++  +  V+G++  L   E  +L +L  N GK  ++ 
Sbjct: 124 IQQSVQAKEERPKKITARDLEIDTEKYEVRVRGKLVNLTPLEFELLRFLAENEGKVFSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 232


>gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435]
 gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR
 gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 219

 Score =  240 bits (615), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          D  S++     +       S   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFLELELTHDNYSVDIEYEGQAGLDKALSNNYDLIILDLMLPN--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I I+        +   D G DD + KP    E+ AR+ A+ RR + 
Sbjct: 62  EICRRVRQEQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I++  D  +  + GE     + E  +L  L  NR + + + QI   ++G +
Sbjct: 121 QKDIIDINGIKIDVDAFNVTINGEQLDFTKTEYDLLYLLATNRNRVLQREQILDHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 DSEVETNVVDVYIRYLRNKLKPYGKDKTIETVRGVGYVI 218


>gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
 gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
          Length = 224

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 105/222 (47%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  ++          L +S   DV  ++  L       +
Sbjct: 5   ILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSENFDVLLLDVMLPS--INGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQVP+I ++   ++   +   D+G DD + KP    E+LAR+  I RR+  
Sbjct: 63  EICRRIRTQSQVPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRVTP 122

Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +E+  +R   +     +  VQG    L + E  +L+ L+ ++ +   +  I ++++
Sbjct: 123 EQTNSESLCLRDIEIDVAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D  +E NVV+ +I  LR KL   +  D +++ R +GY +
Sbjct: 183 G-YDTDIETNVVDVYIRHLRTKLPGAM-NDYIETVRGVGYVM 222


>gi|225180887|ref|ZP_03734335.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168368|gb|EEG77171.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 237

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 96/227 (42%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +    +   +  +++  +  +    +  +   ++  ++  L        E
Sbjct: 9   LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPT--LDGWE 66

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           + R +R   A    P+I ++        +     G DD + KP   RE LARV A+ RR 
Sbjct: 67  ICRRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRT 126

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ++      + ++       ++ +   L  +E  +L  L  N G+ + + Q+   
Sbjct: 127 TDYNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQ 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           ++G ++       ++ HI +LR+K+   + G+  V +   +GY ++ 
Sbjct: 187 VWG-YEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEV 232


>gi|225569383|ref|ZP_03778408.1| hypothetical protein CLOHYLEM_05467 [Clostridium hylemonae DSM
           15053]
 gi|225161591|gb|EEG74210.1| hypothetical protein CLOHYLEM_05467 [Clostridium hylemonae DSM
           15053]
          Length = 224

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D + +++  +      G+   GF   +  E+L++ A E    I   ++  GE  
Sbjct: 1   MIFCVEDDSNIRELVVYTLESTGMKARGFE--DGREFLEALALETPELILLDIMLPGEDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL + ++      ++P+I ++   +    +   DSG DD V KP    E+++RV A+ R
Sbjct: 59  MELLKRLKSSVKTREIPVIMVTAKGAEYDKVMGLDSGADDYVTKPFGMMELVSRVKAVLR 118

Query: 118 RLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R    +    ++   G I +     +    G    L  +E  +L+ LM N    + + Q+
Sbjct: 119 RTAKDDYKREDKIALGNIEIDIRKHEVRASGSTVNLTLKEYELLKRLMRNPNIVLTRDQL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +D   E   V+ H+  LR+KL        +++ R +GY +
Sbjct: 179 LEDIWG-YDFDGETRTVDVHVRTLRQKLGACGEK--IETVRGVGYKM 222


>gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
 gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
          Length = 243

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 96/232 (41%), Gaps = 19/232 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+ +   +      + D+  ++  L   G   
Sbjct: 5   ILVVDDEQPIADILKFNLEKEGYQVICAFDGITAVDIAVKQ-QPDLILLDLMLP--GMDG 61

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +R H  Q P+I ++        +   + G DD V KP   RE+LARV A  RR 
Sbjct: 62  MDVCREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQ 121

Query: 120 KVSNNR------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           +                    G +   +D       G    L  RE  +L Y+  N GK 
Sbjct: 122 QRGGASASESRPQEDKQGLRVGDLFFDTDMYTAYKNGTPLDLTHREYELLHYMAKNAGKV 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           + +  +  A++G F+   +   V+  I +LR+K+  N    + + ++R LGY
Sbjct: 182 MTREHLLQAVWG-FEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGY 232


>gi|158341219|ref|YP_001522417.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158311460|gb|ABW33071.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 247

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 102/230 (44%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +  F + +  E L+   R+    I   ++       
Sbjct: 15  ILVVDDEGPIRRILDTRLSMMGYHV--FTAADGVEALEIFDRQHPDLIVLDVMMPRLDGY 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S+VP+I ++    +   +   + G DD + KP   +E+ +RV  I RR+  
Sbjct: 73  GVCRAIRKTSRVPIIMLTALSEVGDRITGLEMGADDYMVKPFSPKELESRVRCIIRRMGS 132

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G + + ++ R      E   L   E  +LE L +  G  V++ ++ 
Sbjct: 133 LKPFNYRVTGVLNIGSLHIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELL 192

Query: 175 SAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++G  +   V+  VV+ H+S+LR KL+ N++G + + + R +GY++  
Sbjct: 193 EKVWGYSNGSIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTLKC 242


>gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33]
 gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7]
 gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407]
 gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3]
 gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           98HAH33]
 gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407]
 gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7]
 gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein,
           C-terminal [Streptococcus suis GZ1]
 gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14]
 gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3]
          Length = 234

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++    D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEA-EFPDIVILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR +
Sbjct: 61  LEVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSE 120

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           ++  +             G + +  D    +  G+   L  RE  +L +L  + G+ + +
Sbjct: 121 LAETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY I  N
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233


>gi|327438192|dbj|BAK14557.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 237

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +         + D+  ++  L  +    +
Sbjct: 6   ILVVDDEKPIADILQFNLIKEGYRVICAYDGDEALQRVEEEQPDLMLLDIMLPKR--DGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R     P+I ++   S    +   + G DD V KP   RE++ARV A  RRL  
Sbjct: 64  EVCREVRKKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLNV 123

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +   N    G + +  D      + E   L  RE  +L YL  + G+ + +  
Sbjct: 124 PAQIEEAQAETNDIVVGSLTIQPDAYLVLKRDESIELTHREFELLHYLAKHIGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +   ++G +D   +   V+  I +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTIRRLREKIEDNPSHPLWIVTRRGVGYYL 231


>gi|238752749|ref|ZP_04614218.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           rohdei ATCC 43380]
 gi|238709007|gb|EEQ01256.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           rohdei ATCC 43380]
          Length = 239

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 15  ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLP--GGSGI 72

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 73  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALEVDGHDRMVQTVRGTGYRF 235


>gi|158340654|ref|YP_001521822.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310895|gb|ABW32508.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 247

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 103/230 (44%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +  F + +  E L+   R+    I   ++       
Sbjct: 15  ILVVDDEGPIRRILDTRLSMMGYHV--FTAADGVEALEIFDRQHPDLIVLDVMMPRLDGY 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S+VP+I ++    +   +   + G DD + KP   +E+ +RV  I RR+  
Sbjct: 73  GVCRAIRKTSRVPIIMLTALSEVGDRVTGLEMGADDYMVKPFSPKELESRVRCIIRRMGS 132

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G +R+ ++ R      E   L   E  +LE L +  G  V++ ++ 
Sbjct: 133 LKPFNYRVTGVLNIGSLRIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELL 192

Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
             ++G  +   V+  VV+ H+S+LR KL+ N++G + + + R +GY++  
Sbjct: 193 EKVWGYSNGTIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTLKC 242


>gi|318041739|ref|ZP_07973695.1| two component transcriptional regulator [Synechococcus sp. CB0101]
          Length = 234

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G ++    +      L S    D+  ++  L   G   L
Sbjct: 13  LLVVEDDDTIRETVAEALEMEGFAVTAATNGRSAWDLLSRDSYDLVVLDLMLP--GINGL 70

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R  S  P ++ +S   +    +   + G DD + KP   RE++AR  A+ RR +
Sbjct: 71  DLCRQLRQGSTPPLILVVSARDTETDRVLGLEVGADDYLIKPFGMRELVARCRALLRRQR 130

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + +  E   ++++         G    L  +E ++LE  M N  +  ++ Q+   +
Sbjct: 131 TPLPTTSSLEHLDLQLYPGECRVTRAGIEIRLSPKEYKLLELFMQNPRRVWSREQLIEQV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +G+ D   +   V+ HI  LR+K+ +       + + R  GY  
Sbjct: 191 WGV-DYIGDSKTVDVHIRWLREKIEDDPSTPAKLVTVRGFGYRF 233


>gi|89054785|ref|YP_510236.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864334|gb|ABD55211.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 228

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D    ++        +G  +    + +           DV  ++  L       
Sbjct: 6   LVLVVEDEPAQREVLAYNIRAEGFDVVTAAAGDEALVAVRETPPDVIVLDWMLPHV--SG 63

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R ++      ++P+I +S        +   ++G DD + KP    E+LAR+    R
Sbjct: 64  IEVCRQLKMGSETKKIPVIMLSARSEDTDKVRGLETGADDYITKPYSVAELLARLRTQLR 123

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++ S    R E   I +          G+   L   E R+L   M   G+  ++ Q+  
Sbjct: 124 RVRPSTVAERLEYEDIAIDLTEHRVYRGGDTLSLGPTEFRLLSAFMERPGRVWSREQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  V+   V+ H+ +LRK L+     DP+ + R  GY++
Sbjct: 184 RVWGR-DIYVDSRTVDVHVGRLRKALKVGEAGDPIRTVRGAGYAL 227


>gi|238788139|ref|ZP_04631934.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii
           ATCC 33641]
 gi|238723726|gb|EEQ15371.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii
           ATCC 33641]
          Length = 239

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +          A   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGSEVVGAVRQAPPSIILLDLMLP--GTDGIS 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 NNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             + ++T P+ +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 REQPSDTAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              V +  ++SHI  LR+KL    G  P + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLEALDGKKPFIRAVYGMGYRWE 232


>gi|307265844|ref|ZP_07547394.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919119|gb|EFN49343.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 231

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   IFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLNTFKKEKPDLVILDLMLP--GISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE        + V       + +G V  L   E +IL+ L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDLKAHTVKKKGVVVNLTPNEFKILKLLIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|124025854|ref|YP_001014970.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. NATL1A]
 gi|112818640|gb|ABI23443.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123960922|gb|ABM75705.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. NATL1A]
          Length = 245

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 99/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-----DVSAIEAFLIGK 56
            ++++D   +++        +G  +E   + +  E    S  +     D+  ++  L   
Sbjct: 15  LLIVEDDKSIRETLREALVAEGYQVEVCKTGDEAEARVFSQFDTRKKIDLIVLDLMLPN- 73

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +EL R +R ++ + P++ +S   S    +   + G DD + KP    E++AR  AI
Sbjct: 74  -LNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAI 132

Query: 116 YRRLKVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            RR + ++ + +          I ++          +   L  +E +I+E  + N  +  
Sbjct: 133 LRRSETNHEKTQDLSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPKRVW 192

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++ Q+   I+G+ D   +   V+ HI  +R+K+ +     D + + R  GY  
Sbjct: 193 SRDQLLEQIWGI-DYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGYKF 244


>gi|192361393|ref|YP_001980674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Cellvibrio japonicus Ueda107]
 gi|190687558|gb|ACE85236.1| phosphate regulon transcriptional regulatory protein PhoB
           [Cellvibrio japonicus Ueda107]
          Length = 232

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D                 + +    L    + D+  ++  +   G   +
Sbjct: 6   ILIVDDESAIRDMLRVALEMADYQCIEAGNAQDAHSLIIDEKPDLILLDWMMP--GTSGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     + +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLKRDEVTANLPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V++       + +        +  +   +   E R+LE+ + ++ +   ++Q+   
Sbjct: 124 ADPHVNSAPIIVQGLCLDPASHRVTINNQSVDMGPTEYRLLEFFLTHQERAYTRSQLLDH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L      D V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALAIDGHEDLVQTVRGTGYRF 226


>gi|229169264|ref|ZP_04296976.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH621]
 gi|228614205|gb|EEK71318.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH621]
          Length = 230

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 100/228 (43%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  + EE + +  +     I   ++      L
Sbjct: 5   ILLVEDDISIQEMVETYLVKEGFQVTIAS--DGEEGVNAFLKGSFDLIILDIMMPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +  R + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKRIQIGDLTIDPINFTVEKNGKHLKLTLKEFEILKLFLKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|196041892|ref|ZP_03109180.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027264|gb|EDX65883.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 103/223 (46%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R + ++P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 224


>gi|238783827|ref|ZP_04627845.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC
           43970]
 gi|238715214|gb|EEQ07208.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC
           43970]
          Length = 239

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G S +   +          A   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYSTQWITNGAEVVAAVRQAPPAMILLDLMLP--GSDGIT 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 NNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             + +E+ P+ +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 REQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              V +  ++SHI  LR+KL    G  P + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 232


>gi|237808813|ref|YP_002893253.1| two component transcriptional regulator PhoB, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237501074|gb|ACQ93667.1| two component transcriptional regulator PhoB, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 229

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D A +++    +    G              L      ++  ++  + G  G + +
Sbjct: 6   LVVEDEAPIREMLCFMLEQKGYEPVEAADFTEAVALVKEPYPELILLDWMIPGGSGIQFI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L +       +P++ ++     +  +   + G DD + KP   +E+ AR+ A+ RR   
Sbjct: 66  KLMKQEELTRNIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELTARIKAVMRRSAP 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    +   +R+               +   E R+L + M +  +  ++ Q+ + ++G
Sbjct: 126 TATEEVIDVQGLRLDPVSHRVTANDLPLDMGPTEFRLLHFFMTHPERVYSREQLLNNVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  VE+  V+ HI +LRK +        + + R  GY  
Sbjct: 186 T-NVYVEDRTVDVHIRRLRKAMAVTGHDVLIQTVRGSGYRF 225


>gi|225572449|ref|ZP_03781313.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040086|gb|EEG50332.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 104/224 (46%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD + ++         D   + E  +  E  +   S     +  ++  +       
Sbjct: 6   ILVVDDESRMRKLVKDFLVRDNFEVIEAADGEEAVDLFYSDKNIALIILDVMMP--KMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR +S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR  
Sbjct: 64  WEVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTG 123

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +N  +    G I V        V+G    L  +E  +L Y + N+G  +++ +I ++++
Sbjct: 124 QTNKEDVLSLGGIVVDKAAHQVTVEGSPIELSFKEFELLSYFIENQGIALSREKILNSVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +D   +   +++H+ KLR KL  K   + + +   +GY  + 
Sbjct: 184 N-YDYFGDARTIDTHVKKLRSKLGEKG--EYIKTVWGMGYKFEV 224


>gi|160940480|ref|ZP_02087825.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437060|gb|EDP14827.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
          Length = 226

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 111/224 (49%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
            +++DD A ++        + G ++    + + EE +    A++D++ +   ++      
Sbjct: 6   ILVVDDEARMRKLVKDFLTNKGFAV--IEAGDGEEAVDVFFAQKDIALVLLDVMMPKMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR +SQVP+I ++     +  L  F  GVD+ ++KP   + ++ARV AI RR  
Sbjct: 64  WEVLRTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVEAILRRTN 123

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V++ +    G I +        + G+   L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 124 VASTDSVNVGGICIDKAAHQVTIDGQEIDLSFKEFELLTYFVENQGIALSREKILNNVWN 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR K+  K   + + +   +GY  + +
Sbjct: 184 -YDYFGDARTIDTHVKKLRSKMGEKG--EYIKTIWGMGYKFEVS 224


>gi|121605101|ref|YP_982430.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594070|gb|ABM37509.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 242

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 99/224 (44%), Gaps = 12/224 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   + +         G   +  ++S+  +  L  +   DV  ++  L   G+  L
Sbjct: 8   LIVEDEPAIAELIQVNLKHGGFIPVLAYDSVAAQREL-DTMLPDVILLDWMLP--GQSGL 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R+ R       +P++ ++        +   D+G DD + KP   +E+LAR+ A+ RR
Sbjct: 65  SLARLWRKQERTRSIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRR 124

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +    G + + +       QG+   L   E ++L YLM +  +  +++ +   
Sbjct: 125 RAPESQGDSVTVGALVLDAATHRIAWQGQDLKLGPTEFKLLHYLMKHPERVHSRSSLLDK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 185 VWGDH-VFIEERTVDVHVKRLREALGAAGA--MVETVRGAGYRL 225


>gi|332296523|ref|YP_004438446.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179626|gb|AEE15315.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 230

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 100/219 (45%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++  ++      L S    D+  ++  +   G    
Sbjct: 7   ILVVEDEYNLARYLQLELEHEGYLVDTADNGYEAIGLFSEKDFDLVLLDLMIP--GIDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + ++A   V +I ++   +++  +   D G DD V KP    E++AR+ A  R+   
Sbjct: 65  EVCKRMKAQKDVAIIILTARDAVKDKVKGLDLGADDYVTKPFVIEELIARIRARLRKGTK 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +   G + +    R+ +   +   L ++E  +L+YL  N GK + +  I + ++G +
Sbjct: 125 DLEQIVVGDLVISPQTREVKRADKSVNLSKKEFDLLKYLAENVGKVLNRDTILNHVWG-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D    ENVV+ +I  LR K+ +      + + R +GY++
Sbjct: 184 DYYGSENVVDVYIRYLRAKIDDPFENKILHTVRGVGYAL 222


>gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 235

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++              + R D+  ++  L   G    
Sbjct: 3   ILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLP--GIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + RI+R  S VPLI ++    ++  +   ++G DD + KP    E+LAR+ A+ RR   
Sbjct: 61  AVCRILRRESDVPLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTPR 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +R   GP+ +    R+    G    L  +E  +L  L  + G+ + + +I   +
Sbjct: 121 VEGRPADRVIAGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIERV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +G +D   +   V++H+  LR KL         +++ R +GY ++
Sbjct: 181 WG-WDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLN 224


>gi|322411348|gb|EFY02256.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 236

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 18/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G   +  F+  E     +   + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFED-EKPDLIILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR +
Sbjct: 61  LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120

Query: 121 V------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                         +     G +++  D    +  G+   L  RE  +L +L  + G+ +
Sbjct: 121 TIETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 231

 Score =  240 bits (615), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E          L +S R D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPR--LDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTT 122

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   E        + +    R+         L R E  +LE L+AN  + + +++I  
Sbjct: 123 PDDGAGESAAMTFSDLSLDPVTREVTRGDRPISLTRTEFSLLEMLIANPRRVLTRSRILE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD     N +E ++  LR+K   +     + + R +GY +
Sbjct: 183 EVWG-FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 226


>gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 233

 Score =  240 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 103/232 (44%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    + +  E L+  A E+   I   L+      L
Sbjct: 4   ILVVDDEKPISDIIKFNMAKEGYEV--LTAFDGREALEVFAAENPDIIILDLMLPEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I +S   +    +   + G DD V KP  +RE+ ARV A+ RR + 
Sbjct: 62  EVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++     G + +  D    +   +   L  RE  +L +L  + G+ + +  
Sbjct: 122 AADPQLENEADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  + +LR+K+ +  G  + + ++R +GY +  N
Sbjct: 182 LLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|229090970|ref|ZP_04222194.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228692371|gb|EEL46106.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 234

 Score =  240 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E+L RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELLVRVKALLKRYQI 131

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 132 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 233


>gi|294340410|emb|CAZ88791.1| Phosphate regulon transcriptional regulatory protein phoB
           [Thiomonas sp. 3As]
          Length = 244

 Score =  240 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       S E    +      DV  I+  L   G   +
Sbjct: 7   ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLP--GMSGV 64

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +R       +P+I ++        +   D+G DD + KP   +E+LAR+ A+ RR
Sbjct: 65  ALARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRR 124

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE-----VFPLPRRERRILEYLMANRGKRVAKT 171
              +++  + + G + V    R    +          L   E ++L YLMA+  +  ++ 
Sbjct: 125 RAPQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRG 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   ++G     +EE  V+ HI +LR+ L      + V++ R  GY  
Sbjct: 185 ALLDKVWGDH-VFIEERTVDVHIKRLREALSPVQCAEMVETVRGAGYRF 232


>gi|331700440|ref|YP_004397399.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329127783|gb|AEB72336.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 238

 Score =  240 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    + + EE LQ     D   I   L+      L
Sbjct: 5   ILVVDDEKPIVDIEKFNLTKEGYEVSV--AYDGEEALQQVKDVDPDLIILDLMLPKVDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREVRKTKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +++           + G + +  +      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 123 NSSSNNEEDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYL 230


>gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 231

 Score =  240 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G   +  ++ E    L +    D+  ++  L   G    
Sbjct: 8   ILVVDDEPSITEFVSYALKKEGFYTDVVDNGEEALALATKNPYDLFVLDIMLP--GMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R +R+ + VP++ +S   +    +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 66  ELCRRLRSKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +N+      I +  D      +     L  RE  +L  LM N GK V++  +   
Sbjct: 126 GDFPGANHAITASGITLDEDAHTASGEHGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            +G ++   E   V++HI +LR K+    G+DP  V++ R  GY  
Sbjct: 186 AWG-WEYLTETKTVDTHIKRLRDKIEGA-GYDPGLVETVRGYGYRF 229


>gi|256158647|ref|ZP_05456530.1| Transcriptional regulatory protein [Brucella ceti M490/95/1]
 gi|256254051|ref|ZP_05459587.1| Transcriptional regulatory protein [Brucella ceti B1/94]
 gi|261221191|ref|ZP_05935472.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|265997152|ref|ZP_06109709.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|260919775|gb|EEX86428.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|262551620|gb|EEZ07610.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 228

 Score =  240 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLP--GISGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +     G DD V KP    E+LARV A+ RR
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S  ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 185 VWGP-DIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYSF 227


>gi|89096455|ref|ZP_01169348.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. NRRL B-14911]
 gi|89089309|gb|EAR68417.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. NRRL B-14911]
          Length = 234

 Score =  240 bits (615), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 13/231 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L+DD   +++   A    +G  L    +      L  S   D+  ++  L       
Sbjct: 5   LILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPD--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ RIIR  ++VP++ +S        +     G DD + KP     ++A+V +  RR K
Sbjct: 63  FEVCRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYK 122

Query: 121 --------VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    SN RA   G + +  D  +   +G+   L  +E ++L  L  N G+  +  
Sbjct: 123 ELSGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            +F +I+G  D   +   V  HIS LRKK+       + + + R +GY  +
Sbjct: 183 HLFDSIWGK-DSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFN 232


>gi|332530643|ref|ZP_08406576.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332039926|gb|EGI76319.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 227

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G         E  +    +   D+  ++  L   G   L 
Sbjct: 2   LIVEDEPAIAELIAVNLRHNGFQPTLALDGESAQREIDAMLPDLVLLDWMLP--GASGLT 59

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  R       VP+I ++        +   D+G DD + KP   +E+LAR+ A+ RR 
Sbjct: 60  LARRWRGDPRTKAVPIIMLTARGDEADRVAGLDAGADDYMAKPFSTKEMLARIRAVLRRR 119

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E G +++ +         ++  L   E ++L YLM++  +  ++ Q+   +
Sbjct: 120 APEQAAVTLEAGRLKLDTATHRVSYDEQLLKLGPTEFKLLHYLMSHAERVHSRGQLLDKV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ HI +LR+ L        +++ R  GY +
Sbjct: 180 WGDH-VFIEERTVDVHIKRLREALGAA--APMIETVRGAGYRL 219


>gi|315651506|ref|ZP_07904527.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315486241|gb|EFU76602.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 232

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D   ++     +    +      D+  ++  L       +E
Sbjct: 6   LVVDDEKLIVKGIKFSLEQDDYEVDVAYDGKEALKMAKEKEYDIVLLDVMLPE--MDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR  S++P+I ++   +    +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 64  VCQAIREFSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSKK 123

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +    E   +++  D R    + +   L  +E  ILE L  N  K  ++ Q+ S
Sbjct: 124 SKSVDKNERIIEISDLKLDLDSRRVFEKDKEINLTAKEFDILELLTQNPDKVYSREQLLS 183

Query: 176 AIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G    EA +   V+ H+ +LR+K+  N      + +K  +GY  
Sbjct: 184 IVWGNKLHEAGDVRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYF 230


>gi|297585569|ref|YP_003701349.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297144026|gb|ADI00784.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 236

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   + D        +G  +    + +  E ++ + +   + I   ++      
Sbjct: 5   LILVVDDEKPIADILKFGLEKEGFDVMV--AYDGNEAVEKAKKHVPALILLDIMLPYRDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR +
Sbjct: 63  MEVCREVRKEHDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQ 122

Query: 121 VSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            S   +ETG   +         D      +GE   L  RE  ++ YL  + G+ + +  +
Sbjct: 123 RSAEDSETGTKNIDVGVLSIQPDAYLVTKRGEAIELTHREFELIHYLARHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             A++G +D   +   V+  + +LR+K+ +       + ++R +GY  
Sbjct: 183 LQAVWG-YDYFGDVRTVDVTVRRLREKVEDNPSSPLWIVTRRGVGYYF 229


>gi|326693100|ref|ZP_08230105.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 235

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    + S  + D+  ++  L       +
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALTMFSDEKPDLVLLDQMLPE--IDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR+ S++P+I ++   S    +   + G DD V KP  +RE++ARV A  R  K 
Sbjct: 62  EVLRQIRSKSEIPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    V+    E G + +          G+   L  RE  +L YL  + G+ + + 
Sbjct: 122 VAQHSDDTVVNTEDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 HLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230


>gi|319892476|ref|YP_004149351.1| DNA-binding response regulator ResD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162172|gb|ADV05715.1| DNA-binding response regulator ResD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464421|gb|ADX76574.1| transcriptional regulatory protein SrrA [Staphylococcus
           pseudintermedius ED99]
          Length = 241

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 95/233 (40%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +    + +  E L  + + D S I   L+      L
Sbjct: 6   ILVVDDEHRIRKLLKLYLEREGYVI--AEASDGREALDMATKYDYSCILLDLMLPEMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R     P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 64  EVAVKLRELKDTPIIMLTAKGEENNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTES 123

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S             E   + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 124 SKAEQNEPHARDMIEFKHLTIDNDAHKVLADGTPVNLTPKEYELLIFLAKTPNKVFDREQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDWN 223
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + +
Sbjct: 184 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSADAAKMIQTVWGVGYKFEVS 235


>gi|303239291|ref|ZP_07325819.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302593077|gb|EFL62797.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 225

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD A ++         +G  + E  N  E  +   S    D+  ++  +       
Sbjct: 6   ILIADDEARMRKLLSDFLKKEGFQVLEAKNGKEALDIFNSDQSIDLIILDIMMPE--LDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R IR  S+VP+I ++        L  FD G D+ + KP     ++ARV A+ RR  
Sbjct: 64  WSVCRQIRKSSRVPVIMLTARSDESDELFGFDLGADEYITKPFSPMILVARVQALLRRSG 123

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  +      + +   GRD  + G    L  +E  +L +L  N+G  +++ QI ++++ 
Sbjct: 124 NAEYSTKLFDGLEINEIGRDVYIDGVKLDLSPKEFELLVFLADNKGIALSRDQILNSVWD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V++HI KLR KL +K   D + + R LGY  + 
Sbjct: 184 -YDYFGDARTVDTHIKKLRLKLGDKG--DFIQTVRGLGYKFEV 223


>gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 236

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +   +      +      S    D+  ++  L     +  
Sbjct: 8   ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGE-- 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR +S VP+I ++    ++  +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 66  RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHS 125

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++      E G + +   G    V G+   L   E ++L  L    G+  ++ ++   +
Sbjct: 126 DVEPQREVLEFGELTIDVSGHKVLVSGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR K+ +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKIGDNPRNPTWLHTVHGVGYRFE 229


>gi|323340181|ref|ZP_08080445.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323092372|gb|EFZ34980.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 245

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 97/235 (41%), Gaps = 18/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G S++  +       +  + + D   ++  L   G   +
Sbjct: 10  ILVVDDEKAIVTLLEYNLKKAGYSVDTVSEGVSAYNMAVTGKYDFILLDLMLP--GMDGI 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R    + P+I ++        +   + G DD + KP   RE++AR+ AI RR+ 
Sbjct: 68  EITRRLRQERIETPIIILTARDQEYDKIIGLELGADDYLTKPFSPREVIARIKAISRRIT 127

Query: 121 VSNNR-------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            S++               E     V          GE   L  +E  +L Y +   G+ 
Sbjct: 128 SSSDEGGASQPAKVEKEFYEYAGFTVDLAKVSVARNGERVKLTPKEFELLAYFVKRPGRV 187

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +++ ++ + ++G +D   +  +V+ H+S LR+KL +       + + R  GY  +
Sbjct: 188 LSREKLLNGVWG-YDYVGQTRMVDMHVSHLREKLEDDPKHPVYIQTARGFGYRFN 241


>gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 228

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++IDD   +           G  ++  ++ +    +  S   D+  ++  +       
Sbjct: 5   LILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSNAPDLVILDWLMPD--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R+   +P++ ++    +   +   ++G DD + KP  H E++ARV A+ RR  
Sbjct: 63  IEVCKRLRSADNIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRRAS 122

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S        + V    R+ +    V  L  +E  +L   M +  + + + Q+   ++G
Sbjct: 123 PDSRKVLRFADLSVDLGTREVKRGQRVIDLTAKEFDLLVTFMQHPRQVLTRDQLLQIVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE +VV  ++  LR KL        + + R +GY +
Sbjct: 183 -FDMEVESHVVAVYVGYLRDKLEAGGESRLIHTLRGVGYVL 222


>gi|306833967|ref|ZP_07467091.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304423968|gb|EFM27110.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 236

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G   E   + +  E +     E+   I   L+      L
Sbjct: 4   ILIVDDEKPISDIIKFNLAKEGY--ETVTAFDGREAITKFEEENPDLIILDLMLPELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       SN+    G +++  D    + +GE   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|123441447|ref|YP_001005434.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088408|emb|CAL11200.1| two-component system response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 239

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G S +   +          +   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLMLP--GSDGIS 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 NNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             + +E+ P+ +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 REQPSESAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              V +  ++SHI  LR+KL    G  P + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 232


>gi|302391634|ref|YP_003827454.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302203711|gb|ADL12389.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 235

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +  F + + +  L     ED+  +   L+      L
Sbjct: 6   ILVVDDEENIVELVKFNLEKEGYQV--FVTYDGQAALDKLQEEDIDLLVLDLMLPEIGGL 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R IR     S +P+I ++        +   + G DD V KP   RE++ARV AI RR
Sbjct: 64  DICRQIRNDDELSDLPIIMLTAKEKEVDRILGLELGADDYVTKPFSPRELVARVKAILRR 123

Query: 119 LKVSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              S  +      + G I +  +  +  +  +      +E  +L  L  N GK + +  +
Sbjct: 124 TGSSGQKTDEDCIKLGEIVIDLNKYEVLLDDKQVNFTPKEFELLMLLAKNAGKVLTRNFL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSI 220
              I+G +    +   V+ HI + R+KL N L  D   +++ R +GY  
Sbjct: 184 LKEIWG-YGYNGDTRTVDVHIRRTRQKLNNNLAEDVEYIETVRGVGYRF 231


>gi|318059644|ref|ZP_07978367.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078239|ref|ZP_07985571.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 244

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +E            ++   D+  ++  +   G   L
Sbjct: 15  ILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRKAAATPPDLVVLDIQMP--GMDGL 72

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 73  TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +              G +R+    R+         L R E  +LE  +A+  + + + Q
Sbjct: 133 YAVAQQAADDEETLAFGDLRMNLATREVTRGDRAVELTRTEFTLLEMFLAHPRQVLTREQ 192

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 193 ILKTVWG-FDFEPSSNSLDVYVMYLRRKTEASGEPRLVHTVRGVGYVL 239


>gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321]
 gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321]
          Length = 235

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E  ++  + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQYEA-EQPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR  
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     +      + G + +  D    +  GE   L  RE  +L +L ++ G+ + 
Sbjct: 121 LVSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|291561456|emb|CBL40255.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 226

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 111/228 (48%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD   ++         D ++++G+  LE  +  Q+       +D+S +   ++   
Sbjct: 6   ILMVDDEERMRK-----LVKDFLTIKGYRVLEAGDGEQAIDIFFKEKDISLVILDVMMPK 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E  + IR +SQVP+I ++     +  L  F+ GVD+ + KP   + ++AR+ AI R
Sbjct: 61  MDGWETCKTIRRYSQVPIIMLTARSEERDELLGFELGVDEYITKPFSPKILVARIEAILR 120

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   ++     E   IRV  D  +  V G    L  +E  +L Y M N+G  +++ +I +
Sbjct: 121 RGSGTSTGEILEADGIRVDKDAHEVTVDGRPVDLSNKEFELLTYFMENKGIALSREKILN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++  +D   +   +++H+ KLR KL  K   D + +   +GY ++ +
Sbjct: 181 NVWN-YDYFGDARTIDTHVKKLRSKLGPKG--DNIKTVWGMGYKLEVD 225


>gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84]
 gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84]
          Length = 234

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 103/234 (44%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++    D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEA-EFPDIVILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR +
Sbjct: 61  LEVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSE 120

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +   +             G + +  D    +  G+   L  RE  +L +L  + G+ + +
Sbjct: 121 LPETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY I  N
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233


>gi|254466921|ref|ZP_05080332.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium Y4I]
 gi|206687829|gb|EDZ48311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium Y4I]
          Length = 229

 Score =  240 bits (614), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        DG  +    +   EE L     +    I    +      +E
Sbjct: 9   LVVEDEMAQREVLAYNLEADGFRV--LRAGHGEEALLVVEEDMPDIIILDWMMPNLSGIE 66

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++  S    +P+I +S        +   ++G DD V KP    E++ARV    RR+
Sbjct: 67  VCRRLKTRSETRNIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRV 126

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S    R E   I + ++            L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPSTVGVRLEFDDIVLDAETHKVSRADNPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALTQHGGSDPVRTVRGAGYAL 228


>gi|300868620|ref|ZP_07113234.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300333379|emb|CBN58426.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 225

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D A +     A   + G  ++  ++ +           DV  ++  L   G+  L
Sbjct: 3   ILYVEDEAKIASFVCAGLKEQGFVVDYCDNGDEGYLRAMDNEYDVLVLDIMLP--GKDGL 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + + R+   VP+I ++    L   L+  + G DD + KP    E++AR+ A+ RR+ 
Sbjct: 61  AILKSLRRSGRNVPVILLTARNELDDRLEGLNLGADDYLAKPFFVEELIARIHAVIRRVS 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N    GP+++    R      +   L  RE  +LEYLM + G+ + +TQI   ++G
Sbjct: 121 GERQNILSLGPLKLDRITRQVTCNQQSVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N+V+  I ++RKKL    G   ++S R +GY  
Sbjct: 181 -YDFNPTTNLVDVCIQRIRKKLERMGGASCIESVRGVGYCF 220


>gi|295706459|ref|YP_003599534.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
 gi|294804118|gb|ADF41184.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
          Length = 238

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++         +G  +E   + +  E ++ +   D   I   L+  G   +
Sbjct: 7   LLLVDDEDRIRRLLKMYLEKEGYIIE--EAADGHEAIEKALHIDYDLIVLDLMMPGIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EACKQIREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 124

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +          N      + + +D       G+   L  +E  +L YL     K   + Q
Sbjct: 125 ATFIQPETSVKNLIVFDHLTIDNDAHRVTADGKEVNLTPKEYELLCYLAKTPDKVYDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  +D   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 185 LLREVW-HYDFFGDLRTVDTHVKRLREKLNRVSSQAAKMIVTVWGVGYKFEV 235


>gi|213498008|emb|CAR92187.1| PhoB protein [Serratia sp. ATCC 39006]
          Length = 229

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    ++  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAINQLTEPYPELVLLDWMLP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKRETLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     +   E   + +               +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVDEVIEMRGLSLDPSSHRVTTDEYALDMGPTEFKLLHFFMTHSERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225


>gi|332973098|gb|EGK11033.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 239

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 105/230 (45%), Gaps = 14/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGE 58
           + +L+DD   + +        +G   E   +   EE   L    R D+  ++  L     
Sbjct: 3   VLLLVDDEPSILEMLEVTLRKEGFR-EILTARTGEEGVRLAREGRPDLVLLDVMLPD--L 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  E+ R +R+ + VP++ ++   +    L     G DD + KP +  E++ARV A  RR
Sbjct: 60  EGFEVCRRLRSFTTVPILFLTARSNDLDKLMGLGIGGDDYITKPFNPLEVVARVKAQLRR 119

Query: 119 LKVSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +++  +        + G  R+        V+G   P P RE ++L +L  +  +  +K+
Sbjct: 120 QQLAGQQIREETRIHDWGRFRMDEGAGQLTVEGTAVPCPAREFQLLSFLCRHPNQIFSKS 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           Q++  ++G  +   E+N V  H+ +LR+K+  +      + + R LGY +
Sbjct: 180 QLYEQVWGE-ESLGEDNTVMVHVRRLREKIEPDPAKPRYLVTVRGLGYKL 228


>gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family
           [Megamonas hypermegale ART12/1]
          Length = 230

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   +     A    +G  ++   +  E  +  Q   R D+  ++  +        
Sbjct: 4   LIVDDNKQIISILEAYAKKEGYQTVIAVDGQEALDVFQR-ERPDIILLDVMMP--KIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IR  S VP+I I+        +   + G DD + KP    EI+AR+ AI RR++ 
Sbjct: 61  EVCRVIRKTSNVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAILRRIQP 120

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +      +++        +  +V  L ++E  IL  L   + +  ++  + + ++
Sbjct: 121 KTENLQVFSYDNLQINLVDYTVSINNKVLSLTKKEIEILWTLATKKDRVFSRDMLLNKLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           G +D   +   V+SHI +LR KL     G   + +   +GY  + +
Sbjct: 181 G-YDYIGDSRTVDSHIKRLRAKLEKYPHGKWEIKTIWGVGYKFEVS 225


>gi|163856778|ref|YP_001631076.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163260506|emb|CAP42808.1| two-component response regulator [Bordetella petrii]
          Length = 238

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       D+G  +      E       + R D   ++  L   G   L
Sbjct: 5   ILIVEDDVHIADLLQLHLRDEGYEVTHAAEGETGLRQLEAGRWDALVLDLMLP--GIDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ +  RA ++  P+I  S   S    +   + G DD + KP    E++AR+ A+ RR  
Sbjct: 63  EICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARIKALLRRTD 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++   R E   + +    RD  V G+   L  RE  +L +   + GK  ++  +
Sbjct: 123 ALERNARLDAGRLEVSGLSIDPVTRDATVDGQPLDLTPREFDLLYFFARHPGKVFSRMDL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 183 LNQVWG-YQHEGYEHTVNTHINRLRTKIEADPSEPSRILTVWGRGYKF 229


>gi|54307916|ref|YP_128936.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum SS9]
 gi|46912342|emb|CAG19134.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum SS9]
          Length = 229

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G       + ++++ L+         I    +  G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGYQP--IEAEDYDDALEKICEPYPELILMDWMLPGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + ++      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  NLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  ++  +   +++           E   +   E ++L + M ++ +  ++ Q+ + 
Sbjct: 123 VSPTSLDDVIDVQGLKLDPVSHRVTTNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEAGGHDKMVQTVRGAGYRF 225


>gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 233

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 104/233 (44%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++  R D+  ++  L       
Sbjct: 4   ILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEA-ERPDILILDLMLPE--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ R IR  S VP+I +S   S    +   + G DD + KP  +RE+ ARV AI RR  
Sbjct: 61  LEVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTD 120

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +        G +++ +D    +  GE   L  RE  +L +L  + G+ + + 
Sbjct: 121 LTIENQEAEAEPKEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232


>gi|297544467|ref|YP_003676769.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842242|gb|ADH60758.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 231

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    +G S+           L +  +E  + +   L+  G    
Sbjct: 5   ILVVDDEIKILEVVKSYLEREGFSV--ITETNGNNVLDTFKKEKPNLVILDLMLPGISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE        + V       + +G V  L   E +IL++L+ N  +   + ++   
Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKF 226


>gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
 gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
          Length = 229

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       D + ++     +           D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDEMKVDCAYDGQEALDKAREGDYDLILLDVMLPR--MDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR++  
Sbjct: 64  VCRAVREFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRVRSR 123

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S N  ++G + + +D R   + GE   L  +E  +L  L+ + GK  ++  +   
Sbjct: 124 EAEEDSGNVIKSGDVSMDTDRRSLRIAGEDINLTSKEFDMLLLLVNHPGKVYSRDSLLHT 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G  D   +   V+ HI +LR+K+  +      V +K  +GY  
Sbjct: 184 IWG-SDYPGDARTVDVHIRRLREKIEPSPSEPRYVHTKWGVGYYF 227


>gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 237

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+I+D   +++        +G  +  + ++   E      +     I   L+   +   
Sbjct: 5   IVIIEDEDNIREICKRYLEREGYEV--YTAVNGTEGWNVFQQYQPDLIILDLMMPKKDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR +S VP+I ++     +  +     G DD V KP   RE++ RV  I RR   
Sbjct: 63  ELCEEIRQYSNVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122

Query: 122 S--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +        +   E   +++    R   V G    L  +E  +L  +  +  +  +++Q+
Sbjct: 123 ATIQEKEPVSEMIEFLDLKIDPTKRRVFVCGHEIELTVKEFEVLYIMAKHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
              I+  F+     N V   +S+LR+KL      +  + +   +GY  +
Sbjct: 183 LEQIWN-FEYEGCTNAVTVLMSRLREKLEKHTTKNRWIHTVWGIGYRFE 230


>gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
          Length = 235

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G S +   +      L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHILKLLYYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQ--LDGME 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA   + P++ +S        +   + G DD + KP   RE+LARV A+ RR K 
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +           G ++V+ +  +     ++  L  +E  +L YLM +    + + 
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232


>gi|15672379|ref|NP_266553.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116511254|ref|YP_808470.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|125623281|ref|YP_001031764.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281490939|ref|YP_003352919.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|12483717|gb|AAG53732.1|AF178425_2 RrC [Lactococcus lactis subsp. cremoris MG1363]
 gi|12723270|gb|AAK04495.1|AE006276_10 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116106908|gb|ABJ72048.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
 gi|124492089|emb|CAL97018.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281374697|gb|ADA64217.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|300070032|gb|ADJ59432.1| Two-component response regulator [Lactococcus lactis subsp.
           cremoris NZ9000]
 gi|326405973|gb|ADZ63044.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 233

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 102/230 (44%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD   + D        +G  +  F + + EE L++    + D+  ++  L      
Sbjct: 4   ILVVDDEKPISDIVKFNLTKEGFEV--FTAFDGEEALEAFKEVQPDLILLDLMLP--KLD 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L++ R IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR+
Sbjct: 60  GLDVAREIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRI 119

Query: 120 KVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            V+   +          G +R+           +   L  RE  +L YL  + G+ + + 
Sbjct: 120 NVAPAESTDNVKKELIIGNLRINPAHYAAYKNDKQLDLTHREFELLYYLAQHLGEVITRE 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +       V ++R +GY +
Sbjct: 180 NLLETVWG-YDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYM 228


>gi|47567511|ref|ZP_00238223.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47555913|gb|EAL14252.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 233

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 98/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYTV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|332162605|ref|YP_004299182.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318606705|emb|CBY28203.1| response regulator BaeR [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325666835|gb|ADZ43479.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 239

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G S +   +          +   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLMLP--GSDGIS 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 NNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             + +E+ P+ +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 REQPSESAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              V +  ++SHI  LR+KL    G  P + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 232


>gi|239930478|ref|ZP_04687431.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438839|ref|ZP_06578229.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341734|gb|EFE68690.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +    + L    R     +   L+  G    E
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAVATT--GPDGLDEFERNGADLVLLDLMLPGLPGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 60  VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +    E GP+R+  D     V G    LP +E  +LE L+ N G+ + + Q+   ++
Sbjct: 120 EEAAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222


>gi|73661330|ref|YP_300111.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123761572|sp|Q4A160|WALR_STAS1 RecName: Full=Transcriptional regulatory protein walR
 gi|72493845|dbj|BAE17166.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 233

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 6   VVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYDEEPDIVLLDIMLP--GRDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 64  VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++N      I ++ D    + +G+   L  RE  +  YL  + G+ + +  + 
Sbjct: 124 PAQEVNDASNEITIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229


>gi|260169549|ref|ZP_05756360.1| Transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261759076|ref|ZP_06002785.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261739060|gb|EEY27056.1| transcriptional regulatory protein [Brucella sp. F5/99]
          Length = 228

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E     +  D+  ++  L   G   +
Sbjct: 7   IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLP--GVSGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +     G DD V KP    E+LARV A+ RR
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S  ++  + G + +         + +   L   E R+LEY M + G+  +++Q+   
Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  V++  V+ H+ +LRK +      D + + R  GYS 
Sbjct: 185 VWGP-DIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYSF 227


>gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6]
 gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae
           TIGR4]
 gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39]
 gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54]
 gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397]
 gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457]
 gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458]
 gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae]
 gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39]
 gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54]
 gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV104]
 gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV200]
 gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458]
 gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457]
 gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397]
 gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 235

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G S +   +      L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQ--LDGME 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA   + P++ +S        +   + G DD + KP   RE+LARV A+ RR K 
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +           G ++V+ +  +     ++  L  +E  +L YLM +    + + 
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232


>gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae]
 gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
 gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +++   A    +G +++     E   ++      DV  I+  L       +
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLP--KMSGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R    + P++ ++   S Q  ++    G DD + KP H  E+LARV A+ RR  
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL       P+++ R  GY  
Sbjct: 181 Q-DFDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 220


>gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 236

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRAGYELALSEKPDLIVLDLMLPE--MDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R +   VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  +  +  +  ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233


>gi|296136175|ref|YP_003643417.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295796297|gb|ADG31087.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 244

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       S E    +      DV  I+  L   G   +
Sbjct: 7   ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLP--GMSGV 64

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +R       +P+I ++        +   D+G DD + KP   +E+LAR+ A+ RR
Sbjct: 65  ALARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRR 124

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE-----VFPLPRRERRILEYLMANRGKRVAKT 171
              +++  + + G + V    R    +          L   E ++L YLMA+  +  ++ 
Sbjct: 125 RAPQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRG 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   ++G     +EE  V+ HI +LR+ L      + V++ R  GY  
Sbjct: 185 ALLDKVWGDH-VFIEERTVDVHIKRLREALSPVQCAEMVETVRGAGYRF 232


>gi|228910361|ref|ZP_04074177.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 200]
 gi|228849313|gb|EEM94151.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 200]
          Length = 241

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 97/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E        +  D+  ++  +       L
Sbjct: 16  ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMP--KLDGL 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E++ARV A  RR   
Sbjct: 74  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELVARVKAGIRRSTK 133

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G    L  +E  IL+  + N+ +   K QI++
Sbjct: 134 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 194 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 240


>gi|222150271|ref|YP_002559424.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
 gi|222119393|dbj|BAH16728.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
          Length = 233

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 5   IVVVDDEKPIADILEFNLKKEGYEVHVAYDGDDAVELIYDIQPDIVLLDIMLP--GRDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP   RE++ARV A  RR   
Sbjct: 63  EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                E           I V+ +    + +G    L  RE  +  YL  + G+ + +  +
Sbjct: 123 QTQSEEKEESTNIVIKDIVVYPEAYSIKKRGIDIELTHREFELFHYLAKHIGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTIRRLREKIEDDASHPEYIVTRRGVGYFL 229


>gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912]
 gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912]
          Length = 233

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 103/232 (44%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    + +  E L+  A E+   I   L+      L
Sbjct: 4   ILVVDDEKPISDIIKFNMAKEGYEV--LTAFDGREALEVFAAENPDVIILDLMLPEIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I +S   +    +   + G DD V KP  +RE+ ARV A+ RR + 
Sbjct: 62  EVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++     G + +  D    +   +   L  RE  +L +L  + G+ + +  
Sbjct: 122 AADPQLENDADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +   ++G +D   +   V+  + +LR+K+ +  G  + + ++R +GY +  N
Sbjct: 182 LLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|228971393|ref|ZP_04132019.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978006|ref|ZP_04138385.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228781667|gb|EEM29866.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228788260|gb|EEM36213.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 209

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 12/202 (5%)

Query: 28  GFNSLEFEEWLQSSAR-----EDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           G+   E E   ++  +      D   ++  +       L + + IR  S VP+I ++   
Sbjct: 13  GYEWGEAENGKEALKKLETDHYDFVVLDIMMPE--MDGLSVCKEIRKTSDVPIIFLTAKG 70

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDP 140
                ++    G DD + KP    E++AR+ A+ RR   +      + GPI +    R  
Sbjct: 71  EEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQEQQEEIQFGPILINEKSRRI 130

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           E  GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A     V++H+  +R K
Sbjct: 131 EADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYAGSTRTVDTHVKTMRLK 189

Query: 201 LRNKLGFDPVDSKRFLGYSIDW 222
           L      + + +   +GY  + 
Sbjct: 190 LGESG--NYIQTVWGVGYKFEV 209


>gi|154504864|ref|ZP_02041602.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
 gi|153794747|gb|EDN77167.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
          Length = 223

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G       D + ++     E       +   D+  ++  L        
Sbjct: 6   ILVVDDEKLIVKGIRFSLEQDDMEVDCAYDGEEALQYAKNCEYDLVLLDVMLP--KMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P++ ++        +   + G DD + KP +  E+ AR+ AI RR   
Sbjct: 64  QVCQAIREFSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAR 123

Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               A+T      G +R+  + R   +      L  +E  +LE L  N  K  ++  +  
Sbjct: 124 KEESAQTAKILVKGNMRIDCESRRVFIGEREINLTAKEYDVLELLAMNPNKVYSRENLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRF 215
            ++G+ D   +   V+ HI +LR+K+  N      V +K  
Sbjct: 184 LVWGV-DYPGDARTVDVHIRRLREKIELNPSEPKYVHTKWG 223


>gi|303232491|ref|ZP_07319179.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481415|gb|EFL44487.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
          Length = 240

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++   A    +G  + G    + +  L+   +     I   L+       
Sbjct: 8   ILLVEDEKTIREAVSAYLEREGYFVRG--VGDGQNALEEFEKHSFDLIILDLMLPKLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S VP+I ++    ++  +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 66  RVCRAVRETSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAHS 125

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + G + +   G    V+ +   L   E ++L  L    G+   + ++   +
Sbjct: 126 EAEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARYPGRVYTRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFE 229


>gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 226

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   D    L   +G  +             +    D+  ++  L   G   +
Sbjct: 4   ILIVEDEASFSDPLSWLLEREGHEVVVREDGRSGLEEFTRNPADLVLLDVMLP--GMSGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCRELRRESSVPIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLRRRIA 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++    G + + +D     V+GE   +P +E  +LE LM N G+ + + Q+   +
Sbjct: 122 PPAQEDHIVRVGDVELDADSHVVVVRGEPVSMPLKEFELLEMLMRNHGRVLTRAQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ HI ++R K+  N      + + R LGY  +
Sbjct: 182 WGA-DYVGDTKTLDVHIKRVRGKVEENPSSPRMITTIRGLGYKFE 225


>gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 224

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +          +G   E  +              ++  ++  L       
Sbjct: 5   LILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVNPNLVILDLMLPV--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP++ ++    ++  +   D+G DD + KP    E+LARV A  RR+ 
Sbjct: 63  IEVARRIRKTSNVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRRVT 122

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +  +GR+    G    L  +E  +LE L  N GK   + +I   ++ 
Sbjct: 123 PAITGEIRVADLVINLEGREVFRAGRRIELSNKEFELLELLAKNPGKVFTRYEIEEKVWP 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      NVV+ +I  LRKKL        + + R +GY +
Sbjct: 183 GYQ--GGSNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 221


>gi|325914534|ref|ZP_08176878.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325539304|gb|EGD10956.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 227

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +++   A    +G +++     E   ++      DV  I+  L       +
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGLEVPFDVGIIDLGLP--KMSGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R    + P++ ++   S Q  ++    G DD + KP H  E+LARV A+ RR  
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL       P+++ R  GY  
Sbjct: 181 Q-DFDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 220


>gi|325124170|gb|ADY83693.1| DNA-binding response regulator CreB [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 240

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A +          +G ++   N+        S    D   ++  L        
Sbjct: 7   ILCIEDEAAIVLPLRYALEREGWNVSWANTGTQALQYLSEQAFDFIILDIGLPD--LNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ PL+ ++        +   + G DD   KP   REI+AR+ AI+RR++V
Sbjct: 65  EVCKQLRQKSQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEV 124

Query: 122 ------SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                 S N      I                +  G+   L R E R+L  L+ +  +  
Sbjct: 125 QIQSNSSQNPISQAAIVAPSSIWSCNPQSLQIQYHGKSLQLTRYEYRLLFLLIQHPEQVF 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           ++ Q+   I+   + ++E   V++HI  LR+KL+      DP+ + R  GYS+
Sbjct: 185 SRQQLMDHIWEHPEHSLE-RTVDTHIKSLRQKLKQITPDNDPIRTHRGFGYSL 236


>gi|251781983|ref|YP_002996285.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390612|dbj|BAH81071.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 236

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPE--LDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        +     G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|160881638|ref|YP_001560606.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430304|gb|ABX43867.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 234

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG  +  F +    E L+   +E++  +   ++  G   L
Sbjct: 7   ILVVDDDKEIAELVEIHLVSDGYPV--FKAYNAMEGLEILQKENIKLVILDIMMPGIDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S VP+I +S   +    +    +G DD V KP +  E++ARV +  RR   
Sbjct: 65  SMCKKIRETSTVPIIMLSAKSADIDKIIGLSTGADDYVIKPFNPLELMARVKSQLRRFTK 124

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N                + +  +       G+   L   E  IL  L +N G+  +  +
Sbjct: 125 FNPSTYEDKNEKEITVTHLVINKETHVVMAYGKEVRLTPIEFDILYLLASNAGRVFSTDE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           IF  ++         N V  HI +LR+K+  +    + + +   +GY I+
Sbjct: 185 IFERVWNEKMYEAN-NTVMVHIRRLREKIEMDSRNAEIIKTVWGVGYKIE 233


>gi|309792673|ref|ZP_07687126.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308225301|gb|EFO79076.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 256

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 88/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++   +    +G  +              + R D+  ++  L   G    
Sbjct: 23  ILIVEDEVPIQNVLSSYLRAEGYRVYTAKDGASALSQMWAVRPDLVILDIMLP--GMDGF 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R I+    V ++ ++        L     G DD + KP   RE+ ARV  I RR + 
Sbjct: 81  EVCRRIQQDFDVYILFLTARSEEVDKLIGLSIGADDYLTKPFSPRELTARVKTILRRSRT 140

Query: 122 SNNRAETG-----------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              R  T               +          GE   L  RE  +L  L    G+   +
Sbjct: 141 PGPRVHTHQPIERPALRFEQFTIDPGCYTVWRDGEAIILTPREFDLLYVLAEYAGRVCNR 200

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            Q+   I+G  + A  + VV+ HI +LR+K+  +      + + R +GY +
Sbjct: 201 DQLLERIWG-SNFAGIDRVVDVHIKQLRRKIEVDPSNPQIIQTLRGVGYRL 250


>gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 252

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D   +    +G  +    +             DV  ++  L       LE
Sbjct: 24  LVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIMLPDF--DGLE 81

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR     VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 82  VMRRIRGRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 141

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +     E G +R+  D  +         L   E  +L YLM N  + ++K QI   +
Sbjct: 142 HAEQDDHVLEVGDLRMDEDSHEVWRGDTEIHLTATEFELLCYLMRNPRRVLSKPQILDRV 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++N+VE +IS LR+K+ +K     + + R +GY +
Sbjct: 202 WN-YDFGGQDNIVELYISYLRRKI-DKGREPMIHTMRGVGYVL 242


>gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G       +      +       +  ++  L   G    
Sbjct: 6   ILIVDDEEHICELIKFNLEKNGYKTIVAGNGIDALKIVKEEMPQLILLDVMLP--GMDGY 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + IR   A S +P+I I+        +   + G DD + KP   RE++ARV A+ RR
Sbjct: 64  DVCKEIRRDNAISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVLRR 123

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             LK  +     G + +  D  +    GE   L  +E  +L+ L+ NRG+ + +  +   
Sbjct: 124 TALKPVDKCYVFGQVSIDFDKHEVIKNGEKVELTLKEFELLKMLIKNRGRVMTRDFLLDK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           I+G ++   E   V+ HI  LR+K+ +       +++ R +GY  +
Sbjct: 184 IWG-YEYVGETRTVDVHIRHLRQKIEDFDKKPKYIETIRGIGYRFN 228


>gi|126737842|ref|ZP_01753572.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
 gi|126721235|gb|EBA17939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
          Length = 229

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        DG  +    + E    +      DV  ++  +       +E
Sbjct: 9   LIVEDELAQREVLAYNLEADGFRVLKAENGEEGLLVVDEQMPDVIVLDWMMPN--LSGIE 66

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +++ ++   +P+I +S        +   ++G DD V KP    E++ARV    RR 
Sbjct: 67  VCRRLKSRTETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELVARVRTQLRRS 126

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S    R E G I + ++        ++  L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPSAVGLRLEYGDIVLDAETHRVSRSDQMLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALTQFGGDDPVRTVRGAGYAL 228


>gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +          A  D+  ++  L   G    E
Sbjct: 5   LVVEDEESYSDALSYVLRKEGFEVAVAETGPDALDEYDRAGADIVLLDLMLP--GLSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---L 119
           + R +R    VP+I +S   +    +   + G DD V KP   RE+LAR+ A+ RR   +
Sbjct: 63  VCRALRTRGNVPVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVLRRGQDV 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +  E GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   I+G
Sbjct: 123 ELLPDTLEAGPVRMDVERHVVTVSGTEIRLPLKEFELLEMLLRNTGRVLTRGQLIDRIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             D   +   ++ H+ +LR KL  +      + + R LGY  +
Sbjct: 183 A-DYVGDTKTLDVHVKRLRSKLEKDPSNPAHLVTVRGLGYKFE 224


>gi|330446710|ref|ZP_08310362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490901|dbj|GAA04859.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 229

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +    G   +   + +++  L+         I    +  G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQKGY--QAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + ++      Q+P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  NLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  ++  +   +++           E   +   E ++L + M ++ +  ++ Q+ + 
Sbjct: 123 VSPTALDDVIDVQGLKLDPVSHRVTSGDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEAGGHDKLVQTVRGAGYRF 225


>gi|228914576|ref|ZP_04078185.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844895|gb|EEM89937.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 228

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 103/223 (46%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ   +  V  +   ++       
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 126 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 227


>gi|116628742|ref|YP_813914.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|238852956|ref|ZP_04643355.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282852390|ref|ZP_06261732.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300362620|ref|ZP_07058796.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|116094324|gb|ABJ59476.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|238834406|gb|EEQ26644.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282556132|gb|EFB61752.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300353611|gb|EFJ69483.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 235

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L  K    L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    E           + +  +    E  GE   L  RE  +L YL  + G+ + +  +
Sbjct: 123 TQKATEDDEDKNITISNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +      +  ++R +GY +
Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYV 229


>gi|289578186|ref|YP_003476813.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527899|gb|ADD02251.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    +G S+           L +  +E  + +   L+  G    
Sbjct: 5   ILVVDDEIKILEVVKSYLEREGFSV--ITETNGNNVLDTFKKEKPNLVILDLMLPGISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE        + V       + +G V  L   E +IL++L+ N  +   + ++   
Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIHNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKF 226


>gi|323126805|gb|ADX24102.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 236

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYGIVTAFDGREAVTIFEEEKPDLIILDLMLPE--LDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        +     G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGIGYYM 232


>gi|218903108|ref|YP_002450942.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539130|gb|ACK91528.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 254

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 253


>gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 236

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    S           R D+  ++  L        
Sbjct: 13  LLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAARDHRPDLVVLDVMLPD--LDGF 70

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R++R   ++ P++ ++   +    +     G DD V KP    E+ AR+ A+ RR  
Sbjct: 71  EVIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTS 130

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +  R     + +  +  +    G+   L   E ++L YLM N  + ++K QI   +
Sbjct: 131 TGEQAPARLTFADLELDEETHEVYRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++N+VES+IS LR+K+ N +    + + R +GY +
Sbjct: 191 WN-YDFRGDDNIVESYISYLRRKVDN-VEPRLIHTLRGVGYVL 231


>gi|229171105|ref|ZP_04298702.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612378|gb|EEK69603.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 233

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V GE   L  RE  ILE L+ N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|257790033|ref|YP_003180639.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317489476|ref|ZP_07947986.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325830166|ref|ZP_08163623.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
 gi|257473930|gb|ACV54250.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911405|gb|EFV33004.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325487633|gb|EGC90071.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
          Length = 236

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +   +      +      S    D+  ++  L     +  
Sbjct: 8   ILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGE-- 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR +S VP+I ++    ++  +   + G DD + KP   RE++AR  A+ RR   
Sbjct: 66  RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E G + +   G    V  E   L   E ++L  L    G+  ++ ++   +
Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNNEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR K+ +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFE 229


>gi|169827847|ref|YP_001698005.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
 gi|168992335|gb|ACA39875.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +  +           D+  ++  L   G    
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDYVVDIQHHGDEGLKQALHGDYDLIILDIMLP--GMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IRA + +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQIRAVNNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +NN      + + +  R   V GE      +E  +L + + +  + ++K Q++ 
Sbjct: 122 LASNQPTNNMMSIHGLTIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             +G ++ A + + V  HI KLR+K+ R+      +++    GY ++ 
Sbjct: 182 RNWG-YESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRLNV 228


>gi|126651967|ref|ZP_01724159.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591236|gb|EAZ85345.1| two-component response regulator [Bacillus sp. B14905]
          Length = 237

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +         + D+  ++  L  +    +
Sbjct: 5   ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIMLPKR--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++   S    +   + G DD V KP   RE++ARV A  RRL+V
Sbjct: 63  EVCREIRKKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQV 122

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      +N    G + +  D      + E   L  RE  +L YL  + G+ + + 
Sbjct: 123 AAPAAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +   ++G +D   +   V+  I +LR+K+ +       + ++R +GY +
Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYL 231


>gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate
           sensing [Symbiobacterium thermophilum IAM 14863]
          Length = 235

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +   ++ E    +      D+  ++  L   G    
Sbjct: 8   ILVVDDEPSILELVAYNLRRAGFEVLTADNGEDGLRIAREEEIDLVILDVMLP--GIDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R HS++P++ ++        +  F+ G DD V KP   RE+  RV AI RR + 
Sbjct: 66  EVLRALRRHSELPVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKAILRRARR 125

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S      +    GP+ +     +    G    L   E +IL  L  + G+   + ++   
Sbjct: 126 SAEPQDQDTLVLGPLTINFASYEVLRDGRRVDLTPTEFQILGVLARSPGRVFTRDELVDR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + G  D   +   V+ HI  LR KL  N      +++ R +GY  
Sbjct: 186 VMGP-DFYGDVRTVDVHIRHLRAKLEENPSEPRLIETVRGVGYRF 229


>gi|291543513|emb|CBL16622.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 227

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 12/226 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M  L++D   +++       + G+   GF    +F   ++   + D+  ++  L    E 
Sbjct: 1   MIYLLEDDNSIRELVTYSLNNSGLETRGFEKPSDFWRGME-QEQPDLVLLDIMLPE--ED 57

Query: 60  VLELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            L + + +R++      P++ ++   S    +   D G DD V KP    E++ARV A+ 
Sbjct: 58  GLSILKKLRSNPPTRKLPILMLTAKGSEYDKVIGLDCGADDYVPKPFGMMELIARVKALL 117

Query: 117 RRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR +  + + E     + V        V GE   L  +E  +L   + NR   + + Q+ 
Sbjct: 118 RRTERKDPQPEHTIRGLYVCPAKHIVTVDGEPVSLTLKEFEMLCVFLENRNVVLTRDQLL 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G +    E   V+ HI  LR+KL      D +++ R +GY +
Sbjct: 178 NKVWG-YAFDGESRTVDVHIRSLRQKLGEY--ADVIETVRGIGYKL 220


>gi|229159425|ref|ZP_04287444.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228624055|gb|EEK80862.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 233

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|307701723|ref|ZP_07638737.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
 gi|307612981|gb|EFN92236.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
          Length = 229

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 14/229 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G    G    +      +  R ++  ++  L   G   
Sbjct: 1   MIYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTRPELVLLDIMLP--GTDG 58

Query: 61  LELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R +   R+ + +P+I ++   +    +   D G DD V KP    E+++RV A+ R
Sbjct: 59  IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118

Query: 118 RLKVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R   S            G I +        V GE   L  +E ++LE LM   G   ++ 
Sbjct: 119 RSSRSTQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+  +I+G +    E   V+ HI  LRKKL        V + R +GY +
Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGEA--AKYVKTVRGVGYKV 224


>gi|217965616|ref|YP_002351294.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289433637|ref|YP_003463509.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290892561|ref|ZP_06555554.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|315280741|ref|ZP_07869554.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|217334886|gb|ACK40680.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289169881|emb|CBH26421.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290557870|gb|EFD91391.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|307569835|emb|CAR83014.1| DNA-binding response regulator [Listeria monocytogenes L99]
 gi|313611043|gb|EFR85929.1| transcriptional regulatory protein WalR [Listeria monocytogenes FSL
           F2-208]
 gi|313615609|gb|EFR88941.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|313634987|gb|EFS01371.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           N1-067]
 gi|313639665|gb|EFS04456.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           S4-171]
          Length = 237

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLP--GRDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N+  E G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSSAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231


>gi|307151820|ref|YP_003887204.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982048|gb|ADN13929.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 250

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 109/232 (46%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLE---FEEWLQSSAREDVSAIEAFLI 54
            ++++D  +++D  +    ++G  +    +G ++LE     + ++S    D+  ++  L 
Sbjct: 21  ILVVEDEDVIRDMVVLALEEEGYEVKSASDGRSALELLQGSDAVESEKLFDLLVLDLMLP 80

Query: 55  GKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R+IR   + +P++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  SV--NGLDICRLIRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR   S    N   +   I +++      V+GE   L  +E R+LE  M+   +  +
Sbjct: 139 ALLRRQSFSTISANPVRKFRDIMLYTQECRVLVRGEEINLSPKEFRLLELFMSYPRRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL R+    + + + R  GY  
Sbjct: 199 REQLIEQVWGP-DFLGDTKTVDVHIRWLREKLERDPSQPEYLITVRGFGYRF 249


>gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 225

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  ++  G       +G S++   + + EE L+     +   +   L+      L
Sbjct: 4   ILIIDDEEMLVKGLRLSLIQEGYSVD--YAYDGEEGLEKIKSGNFDLVILDLMLPKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R+ S +P+I ++        +   + G DD + KP + RE++AR+ A++RR   
Sbjct: 62  TLCKEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTS 121

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++  + G I +    +  +  G+   L  +E  +L  L +N GK  +K ++   I
Sbjct: 122 PFVKKHDIIKIGDITINIPDKIVQKNGKEIDLTNKEFDLLVLLASNPGKLYSKDKLMDLI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G FD   + N V  HI KLR+K+ +       + +K   GY +
Sbjct: 182 WG-FDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYM 224


>gi|283457730|ref|YP_003362317.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133732|dbj|BAI64497.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 233

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +    +   +G  ++   N     E    S   D+  ++  L   G   
Sbjct: 9   ILVVDDDDALAEMIGLVLAQEGFNAVFCENGARAFETFMRST-PDLVLLDLMLP--GMNG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S VP+I ++     +  +   ++G DD + KP  H E+LAR+    R  +
Sbjct: 66  IEVCQQIRRSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRPRE 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G I +  DGR  +      P+   E  +L  L+ + G+ +++ ++   ++G 
Sbjct: 126 SRQLVVSIGDIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVWGY 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V +++V  H+ +LR K         + + R +GY I
Sbjct: 186 TD--VSDSLVNVHVQRLRAKFDELGADRFIQTVRGVGYKI 223


>gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 233

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    S           R D+  ++  L        
Sbjct: 10  LLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPD--LDGF 67

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R   ++ P++ ++   +    +     G DD V KP    E+ AR+ A+ RR  
Sbjct: 68  EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTA 127

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + +R     + +  +  +    G+   L   E ++L YLM N  + ++K QI   +
Sbjct: 128 NGDQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++N+VES+IS LR+K+ N      + + R +GY +
Sbjct: 188 WN-YDFRGDDNIVESYISYLRRKVDN-TQPRLIHTLRGVGYVL 228


>gi|227894305|ref|ZP_04012110.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227863882|gb|EEJ71303.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 238

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 99/231 (42%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L  K    L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    + ++   + G + +  D    E  G+   L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAATQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  + +LR+K+ +  +    + ++R +GY +
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYV 232


>gi|196036865|ref|ZP_03104252.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195990518|gb|EDX54499.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 254

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 253


>gi|238786434|ref|ZP_04630353.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           bercovieri ATCC 43970]
 gi|238712660|gb|EEQ04753.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           bercovieri ATCC 43970]
          Length = 239

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 97/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G        LE E++  +  R      D+  ++  L   
Sbjct: 15  ILVVEDEAPIREMVCFVLEQNGY-----QPLEAEDYDSAVTRLSEPFPDLVLLDWMLP-- 67

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 68  GGSGIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIK 127

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +           +   +   E ++L + M +  +  ++ 
Sbjct: 128 AVMRRISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSRE 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 188 QLLNYVWGT-NVYVEDRTVDVHIRRLRKALEVDGHDRMVQTVRGTGYRF 235


>gi|88808922|ref|ZP_01124431.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88786864|gb|EAR18022.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 242

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +++        +G  +    +  E    L ++    V  +   L+  G   
Sbjct: 14  LLVVEDDDSIRETVEEALRAEGFEVRACGDGAEAMNLLTATDSMGVDLLVLDLMLPGLGG 73

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R +R  ++  P++ IS   S    +   + G DD + KP   RE++AR  A+ RR 
Sbjct: 74  LDLCRQLRKLNNNTPVLVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRS 133

Query: 120 KVSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + S +         ++G + +F         GE   L  +E +ILE L+ N  +  ++ Q
Sbjct: 134 QQSESVSNQDRQVIQSGNLCLFVRECRVTRDGEDLTLSPKEYKILELLIQNPKRVWSRDQ 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   I+G+ D   +   V+ HI  LR+K+         + + R  GY  
Sbjct: 194 LLERIWGI-DFVGDTKTVDVHIRWLREKIEEEPSSPQHIRTVRGFGYRF 241


>gi|310658660|ref|YP_003936381.1| two-component response regulator yycf [Clostridium sticklandii DSM
           519]
 gi|308825438|emb|CBH21476.1| Two-component response regulator yycF [Clostridium sticklandii]
          Length = 228

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+  G        G  ++   S +  + L++   +D   I   L+       
Sbjct: 4   ILVVDDEPLIVKGLKFSLEQGGHIID--TSFDGNDALENIKSKDYDIILLDLMLPIIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S VP+I +S      + +   + G DD + KP +  E+ ARV AI RR++ 
Sbjct: 62  EVCKKVRETSDVPIIILSAKGEDISKIKGLEIGADDYITKPFNIMELKARVNAILRRMEK 121

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S         G I +    R      E   L  +E  +L  LM N  K  ++  +   ++
Sbjct: 122 SKKIVAQKHLGDITLNYLDRKVTRNSEEINLTSKEFDLLFLLMDNPNKVFSREALLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             ++   +   V+ HI KLR+K+ +       + +K   GY  
Sbjct: 182 -KYEHFGDLRTVDVHIRKLREKIEDNSSNPVHIMTKWGEGYYF 223


>gi|27468287|ref|NP_764924.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867182|ref|YP_188829.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis RP62A]
 gi|242242958|ref|ZP_04797403.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811087|ref|ZP_04825560.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875886|ref|ZP_06284753.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366360|ref|ZP_06613039.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315833|gb|AAO04968.1|AE016748_202 alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637840|gb|AAW54628.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis RP62A]
 gi|242233559|gb|EES35871.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805384|gb|EES58041.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294911|gb|EFA87438.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319485|gb|EFE59852.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis M23864:W2(grey)]
 gi|319401007|gb|EFV89226.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus epidermidis FRI909]
 gi|329724661|gb|EGG61167.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU144]
 gi|329733744|gb|EGG70070.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU045]
 gi|329737321|gb|EGG73575.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU028]
          Length = 236

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 103/231 (44%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +E     E       + + ++  ++  L  K    +
Sbjct: 5   ILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVETEQPELIVLDVMLPKK--DGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR +
Sbjct: 63  EVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQ 122

Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             N   +          G IR+  +  +   + E+  L  +E  +L YL+  +G+ + + 
Sbjct: 123 FVNEIEKEDVDDEDIIIGSIRIRPEFFEVYKEDELLELTPKEFELLLYLIERQGRVITRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            + ++++  ++ A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 183 HMLNSVWN-YEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|225378732|ref|ZP_03755953.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM
           16841]
 gi|225209569|gb|EEG91923.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM
           16841]
          Length = 251

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++       + G  +E F           S    +  ++  L    E  L
Sbjct: 32  IYIVEDDVNIREIERYALKNSGYQVEEFECGADLFKRLESKVPALILLDIMLPN--EDGL 89

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++   IR       VP+I ++   S    +   D G DD ++KP    E+++RV A+ RR
Sbjct: 90  DILTKIRTDKNTAKVPIIMVTAKTSELDKVKGLDLGADDYISKPFGVMELISRVKALLRR 149

Query: 119 LKVSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   ++     I V +D     V G++  L  +E  +L+YL+ N+G  +++ +I + 
Sbjct: 150 TTNAQEESQIAYENILVDNDKHAVYVDGKLCELTYKEFELLKYLVINKGIVLSRDKIMNQ 209

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G FD   E   V+ HI  LR+KL        + + R +GY ++
Sbjct: 210 VWG-FDYEGESRTVDMHIKTLRQKLGEAGSH--IKTVRNVGYMVE 251


>gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 228

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G   E            S    D+  ++  +       +
Sbjct: 4   ILIVDDEPRIRELIHEHLQYAGYICEEAGDGSAALAQLSGGGFDLVILDLMMPF--MDGM 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
              R +RA     P+I ++        L   +SG DD V KP   RE++ARV A+  R  
Sbjct: 62  TCLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLNRTM 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + +    G + + +      V GE   L  +E  +L +L +N+G  +++ +I   
Sbjct: 122 PRPTEAADTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   E+  V++H+  LR  L        + +   +GY  D
Sbjct: 182 VWN-YDYFGEDRTVDTHVKMLRGHLGK--CRSYIATVWGIGYKFD 223


>gi|49184828|ref|YP_028080.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165870203|ref|ZP_02214859.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167638281|ref|ZP_02396558.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705986|ref|ZP_02896448.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650778|ref|ZP_02933675.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566316|ref|ZP_03019234.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229604715|ref|YP_002866357.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684552|ref|ZP_05148412.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721309|ref|ZP_05183099.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734855|ref|ZP_05192567.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741256|ref|ZP_05198944.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755510|ref|ZP_05207544.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760046|ref|ZP_05212070.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|49178755|gb|AAT54131.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714091|gb|EDR19612.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513582|gb|EDR88951.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170128988|gb|EDS97853.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172083239|gb|EDT68300.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562451|gb|EDV16418.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229269123|gb|ACQ50760.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 254

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 103/223 (46%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ   +  V  +   ++       
Sbjct: 34  ILIVDDDPHIRELVSVFLECEGF--QTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 253


>gi|20808829|ref|NP_624000.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|167039802|ref|YP_001662787.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|307724873|ref|YP_003904624.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|20517480|gb|AAM25604.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|166854042|gb|ABY92451.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|307581934|gb|ADN55333.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 231

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   ILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLP--GISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRLRQFSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE        + V         +G V  L   E +IL+ L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|16800610|ref|NP_470878.1| hypothetical protein lin1542 [Listeria innocua Clip11262]
 gi|16414015|emb|CAC96773.1| lin1542 [Listeria innocua Clip11262]
 gi|313618831|gb|EFR90714.1| transcriptional regulatory protein SrrA [Listeria innocua FSL
           S4-378]
          Length = 228

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +   ++     + +   ++  ++D       L+      +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKE--EIDATFVHDGKLGYETFFKDDFDIAIIDLMLPNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNN 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               +   +  ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 HTTTENDEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+        + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDT-KPFLHTVWGVGYKFD 225


>gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 231

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + +E +Q++    V      ++       
Sbjct: 6   ILIADDEAEIADLIELHLKKEGYDV--LKAADGQEAVQAAQTHSVDLAILDIMMPKLDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP +  E++ARV A  RR   
Sbjct: 64  EVIRQIREQHHMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNAHLRRYMQ 123

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +          E G + ++ D R   + GE   L  +E  IL  L +   K  +   IF
Sbjct: 124 MSQPTTSGKPALEAGGVIIYPDQRIVTLYGETIELTPKEFDILHLLASYPKKVFSTENIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++G        N V  HI  LRKKL  +      + +   +GY+ +
Sbjct: 184 QHVWGEAYFET-SNTVMVHIRTLRKKLHEDTNKNKLIKTVWGVGYTFN 230


>gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D   A    +G  +      E    +    R D+  ++  +        
Sbjct: 7   ILVIDDERKIIDIVRAYLEKEGYRVLTATDGEAGLKVWRQERPDLVVLDLMMP--KLSGN 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ RIIR  S+ P+I ++    L   +   + G DD V KP   RE++AR+ A+ RR + 
Sbjct: 65  DVCRIIRQESETPVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVLRRTEH 124

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + V  + R  ++ G+V  L   E  +L+ + AN G+  ++++I   + G
Sbjct: 125 RTFAPVLRVGELTVDVERRQADIGGKVIELTTTEFDLLKLMAANPGRVFSRSEILDRLQG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
                  E  ++SHI  LR+K+         + +    GY ++
Sbjct: 185 DT-YEGYERTIDSHIKNLRRKIEPDPDRPSYIQTVYGAGYRLE 226


>gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 241

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +G  + G    + +  L+   +     I   L+       
Sbjct: 8   ILLVEDEKAIRDAVAAYLEREGYVVRG--VGDGQSALEEFEKHSFDLIVLDLMLPKLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S VP+I ++    ++  +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 66  RVCRAVRETSSVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRRAHA 125

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + G + +   G    V+G    L   E ++L  L    G+   + ++   +
Sbjct: 126 EAEPQLEVLDFGDLVIDISGHKVMVEGSEVDLTASEFKLLTTLARYPGRVYTRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFE 229


>gi|157692813|ref|YP_001487275.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157681571|gb|ABV62715.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 240

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +   ++   + +  E +Q   + D   I   L+  G   +
Sbjct: 9   ILVVDDEARIRRLLKMYLERENYEIDEAENGD--EAIQKGLQSDYDLILLDLMMPGTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR     P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 67  EVCNQIRDKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSQ 126

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++         +      + +  D       G+   L  +E  +L +L     K   + +
Sbjct: 127 TSYLNTGTTTKDVLVFSHLSIDHDAHRVTADGKEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237


>gi|123443385|ref|YP_001007359.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090346|emb|CAL13214.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 229

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEIDGHDRMVQTVRGTGYRF 225


>gi|291550471|emb|CBL26733.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 112/227 (49%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD + ++         D ++ EG+  LE  + +++       +D++ I   ++   
Sbjct: 6   ILVVDDESRMRK-----LVKDFLTREGYMVLEAGDGMEAMDLFYEDKDIALIILDVMMPK 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               ++ R +R  S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI R
Sbjct: 61  MDGWQVCREVRETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILR 120

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R    V N+  E G I +       ++ G    L  +E  +L Y + N+G  +++ +I +
Sbjct: 121 RTLGAVGNDSLEAGGITIDKSAHIVKIDGTPVELSYKEFELLTYFIENQGIALSREKILN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++  +D   +   +++H+ KLR KL +K   + + +   +GY  + 
Sbjct: 181 NVWN-YDYFGDARTIDTHVKKLRSKLGDKG--EYIKTIWGMGYKFEV 224


>gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 235

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G S +   +      L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQ--LDGIE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA   + P++ +S        +   + G DD + KP   RE+LARV A+ RR K 
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +           G ++V+ +  +     ++  L  +E  +L YLM +    + + 
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232


>gi|228933286|ref|ZP_04096142.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826447|gb|EEM72224.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 234

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCLELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 132 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 233


>gi|218899692|ref|YP_002448103.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218541203|gb|ACK93597.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 230

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E        +  D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G    L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 228

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         ++G ++E    L  EE L      + + +   +   G   +
Sbjct: 5   ILLVEDEIAMAALLRQGLEEEGYAVEW--VLTGEEALARLEHLEPALLVLDVRLPGMDGV 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R     +P++ ++    ++  +    +G DD + KP    E+LAR+ A+ RR K
Sbjct: 63  EVCRQVRQRWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALLRRSK 122

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               R     GP+ +  + R          L  RE  +L YLM +  + +++ QI+  ++
Sbjct: 123 RQPTRHLLRNGPLTLDLNARTATCGERTLSLTPREFDLLAYLMQHPRRAISRLQIYREVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D     +++E +IS LR+KL+       + + R +GY  +
Sbjct: 183 G-HDFDHGTSLLEVYISYLRRKLQEAGCPGYIATVRGVGYRYE 224


>gi|323485737|ref|ZP_08091073.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323693077|ref|ZP_08107296.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
 gi|323400917|gb|EGA93279.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323502831|gb|EGB18674.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
          Length = 225

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 112/226 (49%), Gaps = 13/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKGE 58
           +++DD A ++         D ++++GF  +E  +  ++      ++D++ I   ++    
Sbjct: 7   LVVDDEARMRK-----LVRDFLTVKGFLVVEAGDGEEAIDIFFEQKDIALILLDVMMPKM 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R IR +SQVP+I ++     Q  L  F  GVD+ ++KP   + ++ARV AI RR
Sbjct: 62  DGWEVCRTIRKYSQVPIIMLTARGEEQDELQGFSLGVDEYISKPFSPKILVARVEAILRR 121

Query: 119 LK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +S    + G I +        V G+   L  +E  ++ Y   N+G  +++ +I + +
Sbjct: 122 SSTMSQEVIDVGGIHIDKSAHQVLVDGKNVDLSYKEFELITYFAENQGIALSREKILNNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  +D   +   +++H+ KLR KL +K   D + +   +GY  + +
Sbjct: 182 WN-YDYFGDARTIDTHVKKLRSKLGDKG--DYIKTIWGMGYKFEVD 224


>gi|255327015|ref|ZP_05368091.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255296232|gb|EET75573.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 233

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 101/221 (45%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL--EFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +++DD   + +    +   +G +     +    FE +++S+   D+  ++  L   G  
Sbjct: 9   ILVVDDDDALAEMIGLVLAQEGFNAVFCENGSRAFETFMRST--PDLVLLDLMLP--GMN 64

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ + IR  S VP+I ++     +  +   ++G DD + KP  H E+LAR+    R  
Sbjct: 65  GIEVCQQIRRSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRPR 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        G I +  DGR  +      P+   E  +L  L+ + G+ +++ ++   ++G
Sbjct: 125 ESRQLVVSIGDIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V +++V  H+ +LR K         + + R +GY I
Sbjct: 185 YTD--VSDSLVNVHVQRLRAKFDELGADRFIQTVRGVGYKI 223


>gi|242240331|ref|YP_002988512.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya dadantii Ech703]
 gi|242132388|gb|ACS86690.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya dadantii Ech703]
          Length = 229

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +G         +      +    ++  ++  L   G   L
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDVAVSRLAEPYPELVLLDWMLP--GGSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +         +     +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMRGLSLDPSSHRVTTEEYALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETTGHDKMVQTVRGTGYRF 225


>gi|229101075|ref|ZP_04231844.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228682343|gb|EEL36451.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 233

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V GE   L  RE  ILE L+ N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|210608616|ref|ZP_03287933.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
 gi|210152971|gb|EEA83977.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
          Length = 232

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +  ++        ++ L+   +ED+      ++       
Sbjct: 5   ILVVDDEEAIADLVEVYLKSENYNV--LKCYNGKDALKCVEKEDIDLAILDVMLPDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + IR +   P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 63  DICQKIRENHHFPVIMLTARDENIDKITGLTIGADDYITKPFQMLELVARVKAQLRRVTK 122

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +K++ N    G + V  +  +  +  E   L   E  IL  L  NRGK V   ++
Sbjct: 123 YNQQDVKMNENVIIIGGLVVDKENHECTINDEPLSLTPTEFSILWVLCKNRGKVVDSEKL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           F  ++G        N +  HI  LR K+ +       + +   +GY I+
Sbjct: 183 FEEVWGEKYFVNSTNTIMVHIRHLRDKMNDSAENPKYIKTVWGVGYKIE 231


>gi|297584465|ref|YP_003700245.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142922|gb|ADH99679.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 237

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 95/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++  ++   E  L+ +   D   I   L+  G   +
Sbjct: 7   ILVVDDEERIRRLLKMYLERENYDVD--DAENGEIALKKALDYDYDLIVLDLMMPGMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR     P++ ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCEKIRKQKATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAST 124

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +          +      + + +D        +   L  +E  +L YL +   K  A+ Q
Sbjct: 125 TAFLQTETSTKDVLVFPHLTIDNDAHRVTADDKHISLTPKEYELLHYLASAPDKVFAREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++H+ +LR+KL   +    + + +   +GY  +
Sbjct: 185 LLKDVWN-YEFFGDLRTVDTHVKRLREKLNKVSPEAGNMISTVWGVGYKFE 234


>gi|222094028|ref|YP_002528080.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229194647|ref|ZP_04321443.1| Two-component response regulator [Bacillus cereus m1293]
 gi|221238078|gb|ACM10788.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228588840|gb|EEK46862.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 233

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|229094974|ref|ZP_04225973.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229113927|ref|ZP_04243356.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669527|gb|EEL24940.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228688444|gb|EEL42323.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 239

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 12  ILVVDDEKEIRKLITIYLKNEGYKV--LQAGDGEEGLRMLEENEVHLVVLDIMMPKVDGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 70  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 129

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +R+        V GE   L  RE  ILE L  N G   +  QI+
Sbjct: 130 MNGFVIQNEDELEIGEMRINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 189

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 190 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 238


>gi|146280784|ref|YP_001170937.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501]
 gi|145568989|gb|ABP78095.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501]
 gi|327479051|gb|AEA82361.1| two-component response regulator PhoP [Pseudomonas stutzeri DSM
           4166]
          Length = 225

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++       G+ G  ++   + E   +       D++ I+  L   G   L+
Sbjct: 4   LVVEDEALLRHHLQTRLGESGHIVDAVPNAEEALYQTHEFNHDLAVIDLGLP--GISGLD 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R +R+  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR   
Sbjct: 62  LIRQLRSRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    E GP+ +  + +     GE   L   E RILEYLM ++ + VAK ++   +Y  
Sbjct: 122 FTQATIEAGPLLLDLNRKQATANGEPLALTAYEYRILEYLMRHQQQVVAKERLMEQLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DE  + NV+E  + +LR+KL  +    P+++ R LGY
Sbjct: 181 GDEERDPNVIEVLVGRLRRKLEAQCAMKPIETVRGLGY 218


>gi|269957269|ref|YP_003327058.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305950|gb|ACZ31500.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score =  240 bits (613), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E            +  R D   ++  L   G   L
Sbjct: 18  ILVVEDEPAIATAVAQRLTAEGWRVEVARDGLSAVDAAARLRPDAVVLDVMLP--GIDGL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R I+A    P++ ++        L     G DD + KP   RE++ARV A+ RR++ 
Sbjct: 76  EVTRRIQADHPTPILMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARVKALLRRVER 135

Query: 122 SNNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +     T         G + +    R     GE   L   E  +L  L ++    + + +
Sbjct: 136 AQQAVVTSPADPPLVMGDVTIDRAQRRVHRAGEEVHLTPTEFELLVMLASSPKTVLTRER 195

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + ++   D +     V+SHI  LR+KL    G D + +   +GY+ +
Sbjct: 196 LLAEVWDWADASG-TRTVDSHIKALRRKL----GPDLIRTVHGVGYAFE 239


>gi|227431461|ref|ZP_03913510.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352827|gb|EEJ43004.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 235

 Score =  239 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      +    + +    D+  ++  L       +E
Sbjct: 5   LVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEV--DGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKV 121
           + R IR+ S VP+I ++   S    +   + G DD V KP  +RE++ARV A  R R  V
Sbjct: 63  VLRQIRSKSDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKSV 122

Query: 122 SNNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S    ET         G + +          G    L  RE ++L YL  + G+ + +  
Sbjct: 123 SQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFQLLYYLAQHMGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230


>gi|255767758|ref|NP_391202.2| two-component response regulator YvrH involved in cell wall
           processes YvrG [Bacillus subtilis subsp. subtilis str.
           168]
 gi|321312870|ref|YP_004205157.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis BSn5]
 gi|251757511|sp|P94504|YVRH_BACSU RecName: Full=Transcriptional regulatory protein yvrH
 gi|225185386|emb|CAB15312.2| two-component response regulator YvrH involved in cell wall
           processes [YvrG] [Bacillus subtilis subsp. subtilis str.
           168]
 gi|320019144|gb|ADV94130.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis BSn5]
          Length = 237

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 8/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G      ++   EE +       V  I   ++  G    
Sbjct: 6   ILIVDDEKAIVDMIKRVLEKEGYR-NILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R   
Sbjct: 65  EACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 124

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                SN               +  V GE      +  ++L+Y   +    ++K QI+  
Sbjct: 125 SKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           ++G +    + N V  HI KLR+K+ R+    + + + R LGY    N
Sbjct: 185 VWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 231


>gi|228984473|ref|ZP_04144650.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775176|gb|EEM23565.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 209

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 86/202 (42%), Gaps = 12/202 (5%)

Query: 28  GFNSLEFEEWLQS-----SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           G+   E E   ++     +   D   ++  +         + + IR  S VP+I ++   
Sbjct: 13  GYEWGEAENGKEALKKLETNHYDFVVLDIMMPE--MDGHSVCKEIRKTSDVPIIFLTAKG 70

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDP 140
                ++    G DD + KP    E++AR+ A+ RR   +      + GPI +    R  
Sbjct: 71  EEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEIQFGPILINEKSRKI 130

Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200
           E  GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A     V++H+  +R K
Sbjct: 131 EADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYAGSTRTVDTHVKTMRLK 189

Query: 201 LRNKLGFDPVDSKRFLGYSIDW 222
           L      + + +   +GY  + 
Sbjct: 190 LGESG--NYIQTVWGVGYKFEV 209


>gi|194016744|ref|ZP_03055357.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
           7061]
 gi|194011350|gb|EDW20919.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
           7061]
          Length = 240

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +   ++   + +  E +Q   + D   I   L+  G   +
Sbjct: 9   ILVVDDEARIRRLLKMYLERENYEIDEAENGD--EAIQKGLQTDYDLILLDLMMPGTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR     P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 67  EVCNQIRDKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSQ 126

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++         +      + +  D       G+   L  +E  +L +L     K   + +
Sbjct: 127 TSYLNTGTTTKDVLVFSHLSIDHDAHRVTADGKEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237


>gi|255523352|ref|ZP_05390322.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188286|ref|ZP_06856678.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255513006|gb|EET89276.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047412|gb|EFG86854.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 225

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD  L++         +G  +LE  +  +  +   S    D+  ++  L       
Sbjct: 6   ILVVDDEPLIRKLVTDFLKREGYITLEAEDGRKALDVFSSEKDIDLVILDVMLPE--YDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R IR  S  P+I ++        L  FD G D+ + KP     ++ARV A+ RR  
Sbjct: 64  WTVCREIRKKSSTPIIMLTARGEEFDELFGFDIGADEYIAKPFSPNILVARVNAVLRRAV 123

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++  E   + +  +  +  +      L  +E  +L YL  N GK V++ QI   ++G
Sbjct: 124 PVDSKTKEFNGLIIDENAHEVNIDDCTIDLSPKEYDLLMYLTENYGKAVSREQILDKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   V++HI++LR KL +K   + V + R  GY  + 
Sbjct: 184 -YDYYGDLRTVDTHINRLRIKLDSK--SNYVQTVRGYGYRFEV 223


>gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes]
          Length = 237

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVLDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLP--GRDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++           E G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231


>gi|89069576|ref|ZP_01156920.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola granulosus HTCC2516]
 gi|89044911|gb|EAR51001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola granulosus HTCC2516]
          Length = 230

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        +G         E    L    R DV  ++  L       +E
Sbjct: 10  LIVEDEPAQREVLGYNLEAEGFRTSRAEDGEQALMLVQEDRPDVMVLDWMLPN--LSGIE 67

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +++      V +I +S        +   ++G DD V KP    E++ARV    RR+
Sbjct: 68  VCRQLKSRPDTRDVAIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRV 127

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S            + ++        +   L   E R+L   M   G+  ++ Q+   +
Sbjct: 128 RPSTVGQVLTFEDFVLDAETHRVTRADKPLKLGPTEFRLLSTFMEKPGRVWSRDQLLDRV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 188 WGR-DIYVDTRTVDVHIGRLRKALTAHGGSDPVRTVRGAGYAL 229


>gi|257093580|ref|YP_003167221.1| winged helix family two component heavy metal response
           transcriptional regulator PhoB [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046104|gb|ACV35292.1| two component transcriptional regulator PhoB, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 241

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++         G      ++ E  E L      D++ I+  L   G+  L 
Sbjct: 12  LVVEDDKGIQELLRFTLVCGGYQPLCVDTAEAAEALLRETLPDLALIDWMLP--GKSGLA 69

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   +R+ ++    P+I ++        +   + G DD + KP   +E++ARV A+ RR 
Sbjct: 70  LTGRLRSDARTRHLPIILLTARGEETDRVAGLEGGADDYIVKPFSPKELVARVHAVLRRC 129

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GPI + +   +  V G+   L   E R+L +L+AN G+  ++ Q+   +
Sbjct: 130 APEFVKGTLCAGPIELDTVSHEARVDGQRITLTPTEFRLLRFLIANPGRVYSRQQLLDNV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +E+  V+ HI +LR  L        V++ R +GY +
Sbjct: 190 WGDH-VYIEDRTVDIHIRRLRVALGPAAE-QMVETVRGVGYKL 230


>gi|228919194|ref|ZP_04082567.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229176851|ref|ZP_04304250.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188529|ref|ZP_04315571.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594957|gb|EEK52734.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606633|gb|EEK64055.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228840472|gb|EEM85740.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 233

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|167632875|ref|ZP_02391201.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170686480|ref|ZP_02877701.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|227815224|ref|YP_002815233.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|167531687|gb|EDR94352.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170669556|gb|EDT20298.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|227004679|gb|ACP14422.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 225

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 103/223 (46%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ   +  V  +   ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLECEGF--QTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 224


>gi|228927049|ref|ZP_04090115.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229121535|ref|ZP_04250762.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228661999|gb|EEL17612.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228832784|gb|EEM78355.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 228

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 126 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 227


>gi|256752368|ref|ZP_05493229.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748779|gb|EEU61822.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 231

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   ILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLP--GISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRLRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE        + V         +G V  L   E +IL+ L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 226

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G  +   +  +  + +    R     +   L+  G+   
Sbjct: 4   ILIVEDEESLSDPLSYLLEREGFEVRIAD--DGLKAVTEFERHGADLVLLDLMLPGQPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +SQVP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVIRQIRLNSQVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRQGE 121

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +N    GP+R+  +     V+     +P +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 GEELISNVVTAGPVRMDVERHVVSVENTEVSMPLKEFELLEMLLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G  D   +   ++ H+ +LR K+       + + + R LGY  
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKIEADPAVPERLVTVRGLGYKF 224


>gi|221311269|ref|ZP_03593116.1| hypothetical protein Bsubs1_18031 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485812|dbj|BAI86887.1| hypothetical protein BSNT_04948 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 248

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 8/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G      ++   EE +       V  I   ++  G    
Sbjct: 17  ILIVDDEKAIVDMIKRVLEKEGYR-NILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGF 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R   
Sbjct: 76  EACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 135

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                SN               +  V GE      +  ++L+Y   +    ++K QI+  
Sbjct: 136 SKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 195

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           ++G +    + N V  HI KLR+K+ R+    + + + R LGY    N
Sbjct: 196 VWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 242


>gi|30261986|ref|NP_844363.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47777985|ref|YP_018600.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|30256612|gb|AAP25849.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47551690|gb|AAT31075.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 228

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 103/223 (46%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ   +  V  +   ++       
Sbjct: 8   ILIVDDDPHIRELVSVFLECEGF--QTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 126 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 227


>gi|324324273|gb|ADY19533.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 233

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|25026981|ref|NP_737035.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259508536|ref|ZP_05751436.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492261|dbj|BAC17235.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259163886|gb|EEW48440.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 232

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G   +   + +    L   +R D+  +   L+  G    
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGF--DTIIAGDGPTALVEFSRNDIDIVLLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  DVCKELRLVSNVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGD 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +          +   E G +R+  D     V G+   +P +E  +LEYL+ N G+ + + 
Sbjct: 122 TEAEAAEDDTDDQILEGGRVRMDVDSHTVTVDGKAVNMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           Q+   I+G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSRPRHLVTVRGLGYKYE 231


>gi|228937554|ref|ZP_04100195.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970441|ref|ZP_04131095.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977011|ref|ZP_04137418.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782721|gb|EEM30892.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228789290|gb|EEM37215.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822128|gb|EEM68115.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938044|gb|AEA13940.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 233

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis]
          Length = 238

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 12/224 (5%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   ++D        +   ++     E    L       +  ++  +       +E+ R
Sbjct: 10  DDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMP--KIDGIEVCR 67

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------- 118
            +R H+ VP++ ++        +     G DD + KP    E+LAR+ A+ RR       
Sbjct: 68  RMRNHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFLVLGSE 127

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  +   + +          G+   L  +E  +L++  +N G+   KTQ+F   
Sbjct: 128 SRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQLFRNA 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +       ++N V  HI +LRKK+  +      + +   +GY  
Sbjct: 188 W-SDQYIEDDNTVMVHIRRLRKKIEPDPSDPQFIQTVWGIGYKF 230


>gi|238795237|ref|ZP_04638821.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           intermedia ATCC 29909]
 gi|238725430|gb|EEQ17000.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           intermedia ATCC 29909]
          Length = 239

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 97/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G        LE E++  +  R      D+  ++  L   
Sbjct: 15  ILVVEDEAPIREMVCFVLEQNGY-----QPLEAEDYDSAVTRLSEPFPDLVLLDWMLP-- 67

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 68  GGSGIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIK 127

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +           +   +   E ++L + M +  +  ++ 
Sbjct: 128 AVMRRISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSRE 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 188 QLLNYVWGT-NVYVEDRTVDVHIRRLRKALEIDGHDRMVQTVRGTGYRF 235


>gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 234

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 105/234 (44%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E L  + + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIE-LFEAEKPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR +
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTE 120

Query: 121 VSN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +               + G + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 121 LIAVDNQEEDSKLQSLQIGDLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
 gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
          Length = 235

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   V          +G S +   +      L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHVLKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQ--LDGME 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA   + P++ +S        +   + G DD + KP   RE+LARV A+ RR K 
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +           G ++V+ +  +     ++  L  +E  +L YLM +    + + 
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232


>gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 229

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 102/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D        +G  +   ++      + S+   D+  ++  L   G    
Sbjct: 4   ILIVEDEESFSDPLSYSLRKEGYEVAVADNGIDGLRIFSAHGADLVLLDLMLP--GMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCREIRRTSSVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVLRRRHD 121

Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S    +  P+R     +  +    EV+G+   LP +E  +LE L+ N  + + + Q+   
Sbjct: 122 SGEAEDDAPLRAAHLMMDVERHVVEVRGQEVALPLKEFELLEMLLRNVDRVLTRGQLIDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           ++G  +   +   ++ H+ +LR K+ +    +PV   + R LGY  +
Sbjct: 182 VWGA-NYVGDTKTLDVHVKRLRAKIEDDP-RNPVHLVTVRGLGYKFE 226


>gi|148259467|ref|YP_001233594.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326402691|ref|YP_004282772.1| two-component response regulator [Acidiphilium multivorum AIU301]
 gi|146401148|gb|ABQ29675.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325049552|dbj|BAJ79890.1| two-component response regulator [Acidiphilium multivorum AIU301]
          Length = 227

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V    +    + G ++E  ++     ++ +S   D   ++  L G G   L
Sbjct: 3   ILVVEDDKDVGGFVVKGLREAGHTVEHADNGRDGLFMAASENFDAIILDRMLPG-GIDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +RA   V P++ +S    +   +    +G DD + KP    E+LARV A+ RR K
Sbjct: 62  RLLETLRAQDNVTPVLFLSALGEVDDRVKGLKAGGDDYLTKPFAFAELLARVEAMARRGK 121

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R   G + +    R  +  G+   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 122 GEGPATRLNVGDLEMDLLSRGVKRAGQKIDLQPREFRLLEYLMRHAGQVVTRTMLLEGVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR+K+        + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHISRLRQKIDKPFDTPLLHTVRNAGYML 222


>gi|206978308|ref|ZP_03239184.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217957829|ref|YP_002336373.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|225862313|ref|YP_002747691.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|229137101|ref|ZP_04265723.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206743476|gb|EDZ54907.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068004|gb|ACJ82254.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|225789374|gb|ACO29591.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228646361|gb|EEL02573.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 233

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 229

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +E  +       +      D+  ++  L       +
Sbjct: 5   ILVIEDEVKIARFIELELNYEGYEVEKVHDGRDGFKMAKENDYDLILLDIMLPS--MNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S +P+I ++        +   D G DD V KP    E+LAR+    +R   
Sbjct: 63  EILRRLRESSDIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVALKRKIV 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++N  +   + +  +      + E   L ++E  +L YL+ N+ K +++ +I   
Sbjct: 123 VVKENTSNLIKIKNLSIDLEKYSVTFKSEDIELTKKEFDLLLYLVENKNKVLSRDKILET 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LR K+ +K     + + R +GY +
Sbjct: 183 VWG-FDYFGDTNVVDVYIRYLRSKIDDKYKEKYIYTVRGVGYVV 225


>gi|145600097|ref|YP_001164173.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Pestoides F]
 gi|145211793|gb|ABP41200.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Pestoides F]
          Length = 229

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 98/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G        LE E++  + AR      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNGY-----QPLEAEDYDSAVARLSEPFPDLVLLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 58  GGSGIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +           +   +   E ++L + M +  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 178 QLLNYVWGT-NVYVEDLTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 225


>gi|302870967|ref|YP_003839603.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573826|gb|ADL41617.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 224

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +         + G S +     +      +S   D+  ++  L       +
Sbjct: 3   ILIVEDQESLAHTIARRLQEVGYSTDITFDGQEGLHFATSTSYDLIILDIMLP--KIDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L ++IR    Q P++ ++   S++  +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  NLLKLIRLKGIQTPVLCLTAKDSIEDRVIGLDAGADDYLVKPFSFDELLARIRALLRRYA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      +   + + ++       G++  L  +E  ILEYL  N+G+ + ++QI   ++ 
Sbjct: 121 QTREPIIKVKDLVIDTNSHKVTRAGKLIELTSKEYSILEYLARNKGRVLTRSQIAEHVWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N+V+ +I  LR+K+ +      + + R +GY +
Sbjct: 181 -YDFEGTSNIVDVYIRYLRRKIDDGFPEKLIYTIRGVGYML 220


>gi|253578135|ref|ZP_04855407.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850453|gb|EES78411.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 107/225 (47%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD + ++             +    +   EE +     E D++ I   ++      
Sbjct: 14  ILVVDDESRMRKLVKDFLTKKNFQV--LEAGNGEEAMDIFYEEKDIALIILDVMMPKMDG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR +S+VP+I ++     +  L  FD GVD+ ++KP   + ++ARV AI RR  
Sbjct: 72  WEVCREIRKNSKVPIIMLTARSDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTG 131

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +N  +    G I +        V G+   L  +E  +L Y + N+G  +++ +I ++++
Sbjct: 132 QNNPEDVISAGGIVIDKAAHLATVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +D   +   +++H+ KLR K+ +K   + + +   +GY  + +
Sbjct: 192 N-YDYFGDARTIDTHVKKLRSKMGDKG--EYIKTVWGMGYKFEVD 233


>gi|171780121|ref|ZP_02921025.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281469|gb|EDT46904.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 236

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G   E   + +  E +     E+   I   L+      L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGY--ETVTAFDGREAITKFEEENPDLIILDLMLPELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       SN+    G +++  D    + +GE   L  RE  +L +L  + G+ + 
Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|156740994|ref|YP_001431123.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232322|gb|ABU57105.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 230

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEK 59
            +L++D  ++ +        +G S+   N+++    L+ + R+  D+  ++  L      
Sbjct: 6   ILLVEDDPILSETLRYNLEREGYSV--INAVDGVAGLERARRDQPDMVILDVMLPR--LD 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + RI+R  S+VP++ ++        +   + G DD V KP    E+LARV AI RR 
Sbjct: 62  GFSVCRILRQESEVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRS 121

Query: 120 KVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          + G +RV +  R          L ++E  +L  LM NR   +++  +  
Sbjct: 122 ERRIGMMREVLDAGSLRVDTGSRRAWRDNVELNLSQKEFDLLVCLMRNRSMALSRDMLLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G +D   +   V+ HI  LR+K+  +      + + R +GY  +
Sbjct: 182 RVWG-YDFLGDSRTVDVHIRWLREKVEPDPSRPVYIHTVRGIGYRFE 227


>gi|86605728|ref|YP_474491.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554270|gb|ABC99228.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 249

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++       + G  + +  +  +  E + ++ R D+  ++  L   G   
Sbjct: 26  LLVVDDEDAIRETVAVALEEQGYQVLQAADGRQALELVHTAERLDLMILDLMLP--GLNG 83

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R++R      P++ ++   S    +   + G DD + KP   RE++AR  ++ RR 
Sbjct: 84  LDLCRLLRREGNTIPILMLTAKSSETDRVVGLELGADDYLTKPFGMRELIARCRSVLRRR 143

Query: 120 KVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + S+         G I +F+      V+G       +E R+LE  M+N  +   + Q+  
Sbjct: 144 QQSHASEATVLRYGDICMFTQECRVLVRGVEVSFSPKEFRLLELFMSNPRRVWTREQLLE 203

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 204 RIWG-SDFMGDSKTVDVHIRWLREKLELDPSNPEYLVTVRGFGYRF 248


>gi|311029649|ref|ZP_07707739.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 225

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +G ++   N       + S     +  I+  +  K     
Sbjct: 4   ILVADDDLFIRELIAIYLKKEGYTVFEANDGVEATNILSQRTVHLCIIDVMMPNK--NGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR    +P++ ++     +  +  F  G DD + KP    E++ RV A+ RR K+
Sbjct: 62  ELCKEIRELYDLPILMVTAKGESEDKVKGFQQGTDDYIVKPFDTHELIMRVKALLRRYKI 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N+   G + + ++  +  +  E    P +E ++L  L ++ G+  ++ Q+   I+G 
Sbjct: 122 NTTNKVTIGNVVIDANSMEVTINHEPIIFPLKEFQLLFKLASHPGQVFSRDQLIEEIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D    +  V+SHI K+RKKL  ++ FD + + R LGY ++ 
Sbjct: 181 SDFEGFDRTVDSHIKKIRKKLNQQMAFD-ILTIRGLGYRLEV 221


>gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
 gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 239

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 104/232 (44%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +    + + EE L+ + +E+   I   ++      +
Sbjct: 5   ILVVDDEQSIVTLLQYNLERSGYDV--ITASDGEEALEQAEKENPDLIVLDVMLPKVDGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R     VP++ ++        +   + G DD + KP   RE+ ARV AI RR  
Sbjct: 63  DVCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRAD 122

Query: 121 VS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +S          + +   G +++  +  +   + E   L  +E  +L YL  ++G+ + +
Sbjct: 123 ISSLSQGREEEKDGKILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
             + SA++  +D A +  +V+ HIS LR K+ +       + + R LGY ++
Sbjct: 183 DLLLSAVWN-YDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLE 233


>gi|300021830|ref|YP_003754441.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523651|gb|ADJ22120.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 234

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +        +G  +      E  E L +    D++ ++  +       +
Sbjct: 5   IIVVEDEAPLVELLKYNLQSEGYDVVHAADGEEAELLLAEQSYDLAILDWMIP--KISGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R  ++    P+I ++        +    +G DD V KP   +E++AR+ A+ RR
Sbjct: 63  ELCRRLRNRTETQNLPIILLTARGEEADRVRGLTTGADDYVTKPFSVQELMARIKALLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ++   +G I +               L   E R+LE  M +  + +++ Q+   
Sbjct: 123 AAPERMSDILVSGEIVMDRGAHKVTRGAREVRLGPTEYRMLEVFMESPRRVLSRNQLLDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G   E V+E  V+ HI +LRK L      DP+ + R  GY  D
Sbjct: 183 VWGQSSE-VDERTVDVHIGRLRKSLIRGNESDPIRTVRGAGYVFD 226


>gi|228924359|ref|ZP_04087606.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835308|gb|EEM80702.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 242

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++     E    L +  + D+  ++  +       +
Sbjct: 12  ILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMP--KIDGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 70  EVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFLV 129

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R E   I +         +G+  PL  +E  +L +  +N  +   K+Q+
Sbjct: 130 LGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFASNPEQVFTKSQL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++G  +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 190 FRNVWG-DNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKF 236


>gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis]
          Length = 240

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 99/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLP--KLDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +    +E            G +++  D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 123 IRAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +  + SA++  +D A +  +V+ HIS LR K+ N       + + R LGY ++
Sbjct: 183 RDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLE 234


>gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 235

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +          +G   E                 ++  ++  L       
Sbjct: 16  LILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPV--MDG 73

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S +P++ ++   ++   ++  D+G DD + KP    E+LARV A  RR+ 
Sbjct: 74  LEVARRIRKTSNIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVT 133

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +  +GR+    G    L  +E  +LE L  + GK  ++ +I   ++ 
Sbjct: 134 PAITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVWP 193

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      NVV+ +I  LRKKL  +     + + R +GY +
Sbjct: 194 GYQ--GGSNVVDVYIGYLRKKLEAEGERRLIHTVRGVGYVL 232


>gi|296331198|ref|ZP_06873671.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305675924|ref|YP_003867596.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151649|gb|EFG92525.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414168|gb|ADM39287.1| two-component response regulator involved in cell wall processes
           (paired with YvrG) [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 248

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 8/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G      ++   EE +       V  I   ++  G    
Sbjct: 17  ILIVDDEKAIVDMIKRVLEKEGYR-NLLDAASAEEAIPVVKANKVDLIVLDVMMGGMSGF 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R   
Sbjct: 76  EACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 135

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                SN               +  V GE      +  ++L+Y   +    ++K QI+  
Sbjct: 136 SKETNSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 195

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           ++G +    + N V  HI KLR+K+ R+    + + + R LGY    N
Sbjct: 196 VWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 242


>gi|75760587|ref|ZP_00740619.1| Two-component response regulator ycbL [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228903054|ref|ZP_04067192.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 4222]
 gi|228967633|ref|ZP_04128655.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|74491922|gb|EAO55106.1| Two-component response regulator ycbL [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228792069|gb|EEM39649.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228856589|gb|EEN01111.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 4222]
          Length = 241

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E        +  D+  ++  +       L
Sbjct: 16  ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMP--KLDGL 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 74  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 133

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G    L  +E  IL+  + N+ +   K QI++
Sbjct: 134 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 194 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 240


>gi|291523773|emb|CBK89360.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528762|emb|CBK94348.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 229

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N          +   D+  ++  L   G    
Sbjct: 4   ILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLP--GIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR     P++ +S        +     G DD V KP    E++ARV A   R + 
Sbjct: 62  EICKQIREKKNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   I++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + D   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 KEIWNM-DSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRF 227


>gi|160892783|ref|ZP_02073573.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
 gi|156865824|gb|EDO59255.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
          Length = 233

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 104/224 (46%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVL 61
           +++DD + ++          G  +    + + EE +       D+  I   ++       
Sbjct: 7   LVVDDESRMRKLVKDFLSKKGYIV--LEAGDGEEAVDIFMNNKDIGLIILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + IR  SQVP+I ++     +  L  F+ G+D+ + KP   + ++ARV AI RR   
Sbjct: 65  ETCKEIRKFSQVPIIMLTAKSDERDELLGFELGIDEYITKPFSPKILVARVEAILRRTSD 124

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G I +        + GE   L  +E  +L Y M N+G  +++ +I + ++ 
Sbjct: 125 VPADSVISAGGITMDLAAHIVTIDGEPIELSYKEFELLNYFMVNKGVALSREKILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR KL++K   D + +   +GY  + +
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLKDKG--DYIKTIWGMGYKFEVD 225


>gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 229

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  ++  G       DG   +   + + EE L  +  E    I   ++      L
Sbjct: 5   ILIIDDERIMVKGLKFSLEQDGYETDA--AYDGEEGLNKALNEHYDLIILDIMLPKINGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +   + G DD + KP +  E+ ARV AI+RRL +
Sbjct: 63  EVCRQVREQSSVPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIFRRLDL 122

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++ +      +   + +  + R   V G    L  +E  +LE L+  RGK  ++ Q+   
Sbjct: 123 ASPKKNDKYLKIKNLTINFENRTVLVDGRDANLTAKEFDLLEVLVNGRGKIFSREQLLET 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++  +D   +   V+ HI +LR+KL  N    + + +K  +GY  
Sbjct: 183 VW-KYDYLGDLRTVDVHIRRLREKLEKNPSQPELIFTKWGVGYYF 226


>gi|313633173|gb|EFS00056.1| transcriptional regulatory protein SrrA [Listeria seeligeri FSL
           N1-067]
 gi|313637755|gb|EFS03112.1| transcriptional regulatory protein SrrA [Listeria seeligeri FSL
           S4-171]
          Length = 228

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +   ++     + ++  ++  +ED       L+      +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKE--EIDATFVHDGKQGYETFLKEDFDIAIIDLMLPNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S +P+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               +   +  ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATPAEADEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+        + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDT-KPFLHTIWGVGYKFD 225


>gi|299541796|ref|ZP_07052119.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
 gi|298725534|gb|EFI66175.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
          Length = 237

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +         + D+  ++  L  +    +
Sbjct: 5   ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIMLPKR--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   + G DD V KP   RE++ARV A  RRL+V
Sbjct: 63  EVCREVRKKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQV 122

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      +N    G + +  D      + E   L  RE  +L YL  + G+ + + 
Sbjct: 123 VTPAAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +   ++G +D   +   V+  I +LR+K+ +       + ++R +GY +
Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYL 231


>gi|255525674|ref|ZP_05392607.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185432|ref|ZP_06853842.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255510660|gb|EET86967.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050266|gb|EFG89690.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G      ++    + ++ + R+  + I   ++  G    
Sbjct: 6   ILIVDDEEHITELIKFNLENSGYKTICADN--GLDAIKKAKRDTPNLILLDIMLPGMDGY 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + IR     S  P+I I+        +   + G DD + KP   RE+LARV AI RR
Sbjct: 64  DVCKEIRKDNSISSTPIIMITAKGEEFDKVLGLELGADDYITKPFSIRELLARVKAILRR 123

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K  +     G I +  +  +    G    L  +E  +LE L+ NRG+ + +  +   
Sbjct: 124 TTAKSIDKNFGFGKININFEKHEILKDGVKLDLTLKEFEVLELLIKNRGRVMTRDFLLDK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++G ++   E   V+ HI  LR+K+  +      +++ R +GY  +
Sbjct: 184 VWG-YEYIGETRTVDVHIRHLRQKIEEDDKNPKYIETIRGIGYRFN 228


>gi|229165243|ref|ZP_04293033.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228618238|gb|EEK75273.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 233

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRILEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V GE   L  RE  ILE L+ N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX]
          Length = 241

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   ++D   A     G  +    S E    L  S R D+  ++  L        +
Sbjct: 13  LVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSERPDLILLDVLLPD--ISGFD 70

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     VP+I ++   +   T+     G DD V KP     ++ARV A+ RR+K 
Sbjct: 71  VCRRLRDEDDDVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRRVKR 130

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       + +          G    L   E R+L Y+M N G+ + + Q+ 
Sbjct: 131 DPNSAQSSDGVLRVADLELDEKTWTVRRGGVPIDLSPTEFRLLAYMMHNAGRVLTRAQLL 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D A +  +VE+++S LR+KL +  G + + ++R +GY++
Sbjct: 191 ENVWG-WDYAGQSQIVETYVSYLRRKL-DPFGPNLIHTQRGVGYAL 234


>gi|307299746|ref|ZP_07579539.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914612|gb|EFN45005.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 229

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 106/227 (46%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +     S+ +   +  S   D++ ++  L        
Sbjct: 4   ILLVEDDENLANGISYALTQEGWATTLAGSVSYALEMLESGDFDLALLDVMLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S++P+I ++        +   +SG DD V KP   RE+++R+ A  RR++ 
Sbjct: 62  ELCKKIRERSEMPIIFLTARDEEVNIVMGLESGADDYVTKPFRLRELISRIKANARRIQK 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +       ++GP+ + +        G+   L   E +IL  LM N G  + + ++   +
Sbjct: 122 RSVEEGGSLKSGPLELNTSKLRAYRSGKEIILTPTEFKILRTLMENEGIVLGRDRLLQKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           + +  E +++N +  HI KLR+K+  +      +++ R LGY   WN
Sbjct: 182 WDVDGEFIDDNTLSVHIRKLREKVEEDPSKPKLIETLRGLGYR--WN 226


>gi|228920689|ref|ZP_04084032.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838990|gb|EEM84288.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 234

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVMRVKALLKRYQI 131

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEVS 233


>gi|167957496|ref|ZP_02544570.1| two component transcriptional regulator, winged helix family
           protein [candidate division TM7 single-cell isolate
           TM7c]
          Length = 224

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 3/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++   +      + S+   D   I+  + G     L
Sbjct: 3   ILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R      P I ++        +   D+G DD + KP    E+LAR+ AI RR K
Sbjct: 63  DMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRRPK 122

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + G + + +  R  E   +   L  +E  +L+YLM + G+ ++K QI   ++ 
Sbjct: 123 KAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHVWN 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD  +  N VE++I  LRKK+  K     + + R +GY ++
Sbjct: 183 -FDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLE 223


>gi|42779375|ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735291|gb|AAS39230.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 233

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLIKIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|238921581|ref|YP_002935096.1| hypothetical protein NT01EI_3734 [Edwardsiella ictaluri 93-146]
 gi|238871150|gb|ACR70861.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 243

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ +       D+G  +      +    L      D   ++  L   G   L
Sbjct: 12  ILVVEDDTLIAELLTLHLCDEGYRVTHAADGDRGMALVEQGGWDALILDLMLP--GVDGL 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R  ++  P+I  S   S    +   + G DD + KP    E++ARV A++RR +
Sbjct: 70  DICRRVRTMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQE 129

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R   G + +    R   V      L  RE  +L +   + G+  ++ Q+
Sbjct: 130 AMGRNLMLEGGRLSYGLLTIDPMARAVWVGERPIELTPREFDLLYFFARHPGQVFSRLQL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 190 LDKVWG-YQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGYRF 236


>gi|160913591|ref|ZP_02076281.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
 gi|158434052|gb|EDP12341.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
          Length = 250

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +  F   E           D++ ++  +        
Sbjct: 26  ILVLDDEKEIADLVTLYLRNEGYEIYEFYDSEDAVAFMEHNTIDLALLDIMMP--KINGF 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IR     P+I ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 84  EICKMIREKYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYTK 143

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N      N  +   + + +D     +  +   L   E  IL YL  NRGK V   ++F 
Sbjct: 144 YNQPNDNVNIIDFKGLIIDNDSHRVSLYDQPLMLTPIEFNILWYLCKNRGKVVTSEELFE 203

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           A++         N V  HI +LR+K+         + +   +GY I+
Sbjct: 204 AVWKEK-YFDSNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIE 249


>gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match)
           [Frankia alni ACN14a]
          Length = 358

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +           L    R D   ++  L       LE
Sbjct: 22  LVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLAREFRPDAVVLDIMLPD--MDGLE 79

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA S  VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 80  VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAAR 139

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +      G + +  + R+    G    L   E  +L + M N  + ++K QI   
Sbjct: 140 TTEALQGARLVVGDLTMDEESREVARGGVPVHLTATEFELLRFFMRNPRRVLSKAQILDR 199

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE ++S LRKK+ +      + + R  GY +
Sbjct: 200 VWN-YDFGGQANVVELYVSYLRKKI-DAGRPPMIHTMRGAGYVL 241


>gi|217967623|ref|YP_002353129.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217336722|gb|ACK42515.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 232

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +    L   +G  +E                 D+  ++  L  K     
Sbjct: 4   ILLVEDDKGIVNSLTLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEK--DGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++        +     G DD + KP   +E+LAR+ A+ RR + 
Sbjct: 62  EVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + +    P  +    R  +V+G+   L  RE  IL+ L+++ G+   +  I   I+
Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G  +   E   V+ +I  LR+K+ +       + + R LGY  
Sbjct: 182 GE-NFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKF 223


>gi|254438411|ref|ZP_05051905.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
 gi|198253857|gb|EDY78171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
          Length = 227

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++        +G  +      E    +      DV  ++  L       +E
Sbjct: 7   LVIEDEPAQREVLSYNLKAEGYRVTVAQDGEQGLLMVEEDAPDVIVLDWMLPHV--SGIE 64

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +++ S    +P+I +S        +   ++G DD V KP    E++ARV    RR+
Sbjct: 65  VCRQLKSRSNTRAIPIIMLSARSEELDKVRGLETGADDYVVKPYAVAELMARVRTQLRRV 124

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S          I + +D            L   E R+L   M   G+ +++ Q+   +
Sbjct: 125 RPSKVGQVLTFDDIALDADTHRVTRGDVELKLGPTEFRLLATFMEKAGRVLSREQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 185 WGR-DVYVDTRTVDVHVGRLRKVLTQHGGDDPVRTVRGAGYAL 226


>gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
 gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
          Length = 250

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +G  + G    + +  ++   +     I   L+       
Sbjct: 19  ILLVEDEKAIRDAVAAYLEREGYWVVG--VGDGQSAVEEFEKHQFDLIVLDLMLPKLSGE 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++RR   
Sbjct: 77  RVCRAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 136

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       + G + +   G    V+G+   L   E ++L  L  + G+   + ++   +
Sbjct: 137 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 196

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL  +      + +   +GY  +
Sbjct: 197 LG-YDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFE 240


>gi|169831576|ref|YP_001717558.1| two component transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638420|gb|ACA59926.1| two component transcriptional regulator, winged helix family
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 231

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +   N  +    +  + R D+  ++  L   G   L
Sbjct: 4   ILVVEDEKHIVELMRYGLEKEGFQVVEANDGDRALEMVHTGRIDLVVLDIMLP--GLDGL 61

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R++R +     +P+I +S        +   + G DD + KP   RE++ARV A  RR
Sbjct: 62  TVCRLLRQNERTRDIPVIILSARGQELDRVLGLELGADDYITKPFSVRELVARVKARLRR 121

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              ++ +   A  G + V  +    E  G+   L   E  +L  L  + G+  ++  +  
Sbjct: 122 HVPVQEARKTARFGDLVVDPERLAVEAAGKREQLTPTEFELLWVLAGSPGRVFSRELLLQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++G +D   +   V+ HI  +R+KL+   G    +++ R +GY  
Sbjct: 182 KVWG-YDYTGDSRTVDVHIRHVRQKLQRLPGSPQYIETVRGVGYRF 226


>gi|300779614|ref|ZP_07089470.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533724|gb|EFK54783.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 224

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                     D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLEAEGFEAVPVTDGGAAVGAFRDQDPDLVLLDLMLP--GMSGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++ + IR  S VP++ ++        +   +SG DD + KP   RE++AR+ A  R+  +
Sbjct: 63  DICKEIRKESNVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPRELIARIRARLRQNSE 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E G ++V          G+   L   E  +L  L     +   + ++  +++G 
Sbjct: 123 EPSEILEIGDLQVDVPQHIVTRDGKEISLTPLEFDLLVELARKPQQVHTREELLESVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+ +     + + + R +GY 
Sbjct: 182 YRNASDTRLVNVHVQRLRSKIEHDPENPEIILTVRGVGYK 221


>gi|170751369|ref|YP_001757629.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657891|gb|ACB26946.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 225

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +A   + G   +     E   +L  S   D   ++  L    + V 
Sbjct: 3   LLVVEDDKDINRQVVAALEEAGYVADKAYDGEEGGYLGESEPYDAIILDMGLPKA-DGVT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L +  RA  + P+I ++        +D FD+G DD V KP H  E++ARV A+ RR   
Sbjct: 62  VLQKWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRALLRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + ++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y  
Sbjct: 122 HATSQIACGPVTLDTRSGKVFVDGAQVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D   + N +E  + +LRKKL      D + + R LGY +D N
Sbjct: 182 -DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLVDPN 219


>gi|49479989|ref|YP_034596.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|218901462|ref|YP_002449296.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228913000|ref|ZP_04076642.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228983517|ref|ZP_04143725.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089394|ref|ZP_04220667.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229154029|ref|ZP_04282157.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|301051996|ref|YP_003790207.1| response regulator [Bacillus anthracis CI]
 gi|49331545|gb|AAT62191.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|218538182|gb|ACK90580.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228629449|gb|EEK86148.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228693943|gb|EEL47633.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228776224|gb|EEM24582.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228846654|gb|EEM91664.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300374165|gb|ADK03069.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 233

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
 gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
          Length = 230

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E            ++ R D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAITNNRPDALILDVMMPR--LDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTV 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + +     + +    R+    G    L R E  +LE L+AN  + + +++I   
Sbjct: 123 SDDSGDSQKMTFSDLTLDPVTREVTRGGRQISLTRTEFSLLEMLIANPRRVLTRSRILEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E +I  LR+K   +     + + R +GY +
Sbjct: 183 VWG-FDFPTSGNALEVYIGYLRRKTEAEGEPRLIHTVRGVGYVL 225


>gi|257792299|ref|YP_003182905.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317490222|ref|ZP_07948710.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325833586|ref|ZP_08166035.1| DNA-binding response regulator [Eggerthella sp. HGA1]
 gi|257476196|gb|ACV56516.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316910716|gb|EFV32337.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325485510|gb|EGC87979.1| DNA-binding response regulator [Eggerthella sp. HGA1]
          Length = 230

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +      G    GF +             ++  ++  L       
Sbjct: 1   MIYYVEDDTNIRDLTVYALKQAGFEAAGFPAAGEFFAACKERLPELVLLDIMLPE--IDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+  ++R   A   +P++ ++   +   T+   D+G DD + KP    E+++RV A+ R
Sbjct: 59  LEILHMLRENPATKHLPVMMLTAKGTEFDTVSGLDAGADDYLAKPFGMMELVSRVNALMR 118

Query: 118 RLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R       +++    GPI +       +V GE   L  +E  +L  L+ N+G  ++++Q+
Sbjct: 119 RASAPPVMADDELSCGPIELCVSAHTVQVGGEPITLTLKEFDLLHTLLQNQGHVLSRSQL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
              ++G+     E   V+ H+  LR+KL    +     V + R +GY I
Sbjct: 179 LEDVWGMT-YVGETRTVDVHVQTLRQKLAAAQEGADALVRTVRGVGYCI 226


>gi|166033144|ref|ZP_02235973.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
           27755]
 gi|166027501|gb|EDR46258.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
           27755]
          Length = 260

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +D  ++  F + +      +S + D++ ++  L        
Sbjct: 34  ILVVDDEKEIADVIELYLKNDQYNVLKFYTGQEALDCIASTKIDLAILDIMLPDV--DGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 92  QILKQIREKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQIRRYTQ 151

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N          + G + +     +         L   E  IL  L  NRGK ++  ++F
Sbjct: 152 YNEGTKDEGDVIDFGGLFLNRQSHECTYNEVPLTLTPIEFDILWLLCENRGKVISSEELF 211

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             ++         N V  HI  LR+K+    G  D + +   +GY ++
Sbjct: 212 HKVWKEECYKNSNNTVMVHIRHLREKMNGPTGKSDFIKTVWGVGYKVE 259


>gi|312126427|ref|YP_003991301.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776446|gb|ADQ05932.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 224

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    + +    +  + + D+  ++  +        
Sbjct: 4   ILIVDDDPHIRELVAHFLTLEGFDIYEAANGKDALNILDTVKVDLVILDIMMPE--IDGW 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   IR +   +P++ ++        +  F+ G DD + KP    E++ARV A+ RR +
Sbjct: 62  QLCHNIRKYYGDIPILMLTVKGETNDKVKGFEVGADDYLVKPFDPIELVARVKALLRRYQ 121

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S +   + G + +     +  V  E   LP +E  +L  L +  GK   + Q+   I+G
Sbjct: 122 ISTSQTIKIGELFLNKKTYECRVGEEEILLPPKEFELLFKLASYPGKTFTRDQLIEEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +E  V+ HI +LR+K  +K     + + R LGY ++ 
Sbjct: 182 -YDYEGDERTVDVHIKRLREKF-SKYCIFVIRTIRGLGYRLEV 222


>gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 229

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   +        G +G  +   +S E        +  D+  ++  +   G    
Sbjct: 5   ILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMP--GMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + ++A  +VP+I +S        +  F  GVDD   KP    E+  RV A+ RRL  
Sbjct: 63  ETYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N  + G + +    R   V      L  ++  +L  + +N  +   K  +   I
Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +       ++N V  HI +LR+K+  +    + + +   +GY  ++
Sbjct: 183 WDSS-FYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFEY 227


>gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 230

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E          L ++ R D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLIANNRPDAVVLDVMMPR--LDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTS 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +       + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 123 PDEGPDSPALTFLDLTLDPVTREVTRGSRQISLTRTEFALLEMLIANPRRVLTRSRILEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E +I  LR+K         + + R +GY +
Sbjct: 183 VWG-FDFPTSGNALEVYIGYLRRKTEASGEPRLIHTVRGVGYVL 225


>gi|304311894|ref|YP_003811492.1| Phosphatase regulon transcriptional regulatory protein [gamma
           proteobacterium HdN1]
 gi|301797627|emb|CBL45848.1| Phosphatase regulon transcriptional regulatory protein [gamma
           proteobacterium HdN1]
          Length = 228

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +++     +      +    D+  ++  L   G   +
Sbjct: 5   ILIVDDEIAICELLTLALEQAGFTVQAAYDGKEAWIKLAEQAPDLLLLDWMLP--GTSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R IR    +   P+I +S        +   + G DD + KP   RE+++R+ A+ RR
Sbjct: 63  ELARRIRQTDNLRTLPIIMLSAKSEEDNKITGLEIGADDYITKPFSTRELISRIKALLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +   G + +    +    +     L   E ++LE+ + N  +  ++ Q+ + 
Sbjct: 123 RAPDRLEQQLVHGELTLDVISQRVHTKSGEISLGPIEFKLLEFFLRNPNRVFSREQLLNR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     +E+  V+ HI +LRK L        +++ R  GY +
Sbjct: 183 VWGST-VYIEDRTVDVHILRLRKSLNKAELPPMIETVRGSGYRL 225


>gi|269216464|ref|ZP_06160318.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
 gi|269129993|gb|EEZ61075.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
          Length = 239

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +   +      +           D+  ++  L     +  
Sbjct: 9   ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALDEFGKHHFDLVVLDLMLPRVPGE-- 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R+IR +S VP+I ++    ++  +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 67  RVCRVIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 126

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E G + +   G    V  +   L   E ++L  L    G+  ++ ++   +
Sbjct: 127 DSEPQREVLEFGELTIDVSGHKVLVNDKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR K+ +       + +   +GY  +
Sbjct: 187 LG-YDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 230


>gi|228477430|ref|ZP_04062066.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
 gi|228250865|gb|EEK10053.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
          Length = 235

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++  + D+  ++  L       
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEA-EKPDLVILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR +
Sbjct: 61  LEVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTE 120

Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G + +  D    + +G    L  RE  +L +L  + G+ + 
Sbjct: 121 TIETAAEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|206972693|ref|ZP_03233632.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229068014|ref|ZP_04201325.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077615|ref|ZP_04210248.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|206732379|gb|EDZ49562.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228705695|gb|EEL58048.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228715117|gb|EEL66981.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 233

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|58336426|ref|YP_193011.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227902981|ref|ZP_04020786.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58253743|gb|AAV41980.1| putative response regulator [Lactobacillus acidophilus NCFM]
 gi|227869224|gb|EEJ76645.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 238

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 98/231 (42%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L  K    L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +  +   + G + +  D    E  G+   L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAANQEEPDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  + +LR+K+ +  +    + ++R +GY +
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYV 232


>gi|289579246|ref|YP_003477873.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289528959|gb|ADD03311.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   IFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLP--GISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTND 122

Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE        + V       + +G V  L   E +IL++L+ N  +   + ++   
Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKF 226


>gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 241

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E         + D+  ++  L       L
Sbjct: 11  ILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEGEKPDLIILDLMLP--KIDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +RA    P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 69  EVAKRVRAKHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAA 128

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +N   + G + +  +      +GE   L  RE  +L YL  + G+ + +  +
Sbjct: 129 VKAPAEEDNNTDIQVGDLVIHPEAYTVSKRGENINLTHREFELLHYLAEHIGQVINREHL 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 189 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235


>gi|239627534|ref|ZP_04670565.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239517680|gb|EEQ57546.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 235

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 100/229 (43%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L      D+  ++  L        E
Sbjct: 5   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVELAKKTEYDIVLLDVMLP--KLDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR  S +P+I ++        +   + G DD ++KP +  E+ AR+ AI RR    
Sbjct: 63  VCQAIREFSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSSKN 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +N+    G +++ ++ R   +      L  +E  +LE L+ N  K  ++  +
Sbjct: 123 KRLKKEEANNSVIGQGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREAL 182

Query: 174 FSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G    ++ +   V+ H+ +LR+K+  +      V +K  +GY  
Sbjct: 183 LTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 231


>gi|239815299|ref|YP_002944209.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus S110]
 gi|239801876|gb|ACS18943.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus S110]
          Length = 230

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G            +    +   D+  ++  L   G+  L+
Sbjct: 7   LIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDAFLPDLILLDWMLP--GQSGLQ 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  R       +P++ ++        +   D+G DD + KP   +E+LAR+ A+ RR 
Sbjct: 65  LARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRAVLRRR 124

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V   R E G + + +       QG    +   E ++L YLM +  +  ++ Q+   +
Sbjct: 125 APEVVTERVEIGELALDTATHRVTWQGNALKVGPTEFKLLAYLMQHAERVHSRAQLLDKV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 185 WGDH-VYIEERTVDVHVKRLRESLGAA--SPMVETVRGAGYRL 224


>gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 228

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 5   ILIVDDDKDIRNLISVYLENEGIDTQKAEDAAEALKLLEQKEFDLIILDIMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD + KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREERNLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQLRRYKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       N  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTDTISTANVIEIGDLTVNTDTRQVWVRGKEVRLTPKEFDILELLSRNKGIVMSVEKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++   D    +N V  HI+K+R K+         + +    GY I
Sbjct: 183 EAVW-KEDFFKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGTGYKI 228


>gi|300715551|ref|YP_003740354.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia billingiae Eb661]
 gi|299061387|emb|CAX58497.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia billingiae Eb661]
          Length = 229

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +          +    L      D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVNLLIEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMSDTQPLEMGPTEYKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALELTGHDRMVQTVRGTGYRF 225


>gi|262373903|ref|ZP_06067180.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262310914|gb|EEY92001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 240

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D A +          +G ++   N+        S    D   ++  L  +     
Sbjct: 7   ILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ--NGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R   Q PL+ ++        +   + G DD   KP   REI+AR+ AI+RR+++
Sbjct: 65  EVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEI 124

Query: 122 SNNRAETGP-------------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                 + P                       +  G++  L R E R+L  L+ +  K  
Sbjct: 125 QAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPEKVF 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           ++ Q+   I+   + ++E   V++HI  LR+KL+      DP+ + R  GYS+
Sbjct: 185 SRQQLMDHIWEHPEHSLE-RTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSL 236


>gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 247

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G   E          L      D   ++  L       +E
Sbjct: 13  LLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQ--LDGIE 70

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R   S+ P++ +S        +   + G DD V KP   RE+LARV AI RR + 
Sbjct: 71  VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             +R++ +  +     E+ PL  +E  +L YLM +    + + +
Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 191 LLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238


>gi|296133876|ref|YP_003641123.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032454|gb|ADG83222.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 231

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +   +    +      L +    D+  ++  L        E
Sbjct: 7   LVVDDEPKILKILEHTLKKERFQVITAQNGMEAVELAAKVSPDLVLLDLMLPD--IDGFE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R I++ S +P+I +S        +  F  G+DD   KP    E++ R+ A+ RR K  
Sbjct: 65  VCRRIKSRSDIPIIVLSAKDDEVDKIVGFKLGIDDYQTKPFSPTELVLRIRAVLRRSKGC 124

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++       I +    R   V G    L  +E  +L  L +   +  ++ Q+   I
Sbjct: 125 KEAANDGILTYKDIEINQRTRQVRVYGRNVNLTVKEFDLLWLLASYPNQVFSRMQLLEKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +       +EN V  HI +LR+K+  +    + + +   +GY  +
Sbjct: 185 WDSS-YYGDENTVTVHIRRLREKIENDPADPEFIKTIWGIGYKFE 228


>gi|329768144|ref|ZP_08259649.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
 gi|328838055|gb|EGF87674.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
          Length = 234

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   N  E    L  S   D+  ++  L  K    +
Sbjct: 6   ILVVDDEEPIANILDFNLKKEGYDVIVANDGEKAVELAFSENPDLILLDLMLPKK--DGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I ++   S    +   + G DD V KP   RE++ARV    RR+  
Sbjct: 64  EVCREVRAKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             I ++ +    +  GE   L RRE  +  YL  +RG+ + +  
Sbjct: 124 QQEEVVEEKSGSDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGY 229


>gi|227874892|ref|ZP_03993045.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|227844667|gb|EEJ54823.1| response regulator [Mobiluncus mulieris ATCC 35243]
          Length = 229

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 14/229 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G    G    +      +    ++  ++  L   G   
Sbjct: 1   MIYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTPPELVLLDIMLP--GTDG 58

Query: 61  LELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R +   R+ + +P+I ++   +    +   D G DD V KP    E+++RV A+ R
Sbjct: 59  IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118

Query: 118 RLKVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R   S            G I +        V GE   L  +E ++LE LM   G   ++ 
Sbjct: 119 RSSRSTQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+  +I+G +    E   V+ HI  LRKKL        V + R +GY +
Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGEA--AKYVKTVRGVGYKV 224


>gi|116627886|ref|YP_820505.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116101163|gb|ABJ66309.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
 gi|312278467|gb|ADQ63124.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus thermophilus ND03]
          Length = 235

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++  + D+  ++  L       
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEA-KKPDLVILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR +
Sbjct: 61  LEVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTE 120

Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G + +  D    + +G    L  RE  +L +L  + G+ + 
Sbjct: 121 TIETAVEESSNSGKQEISIGELVIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|149181689|ref|ZP_01860182.1| ResD [Bacillus sp. SG-1]
 gi|148850667|gb|EDL64824.1| ResD [Bacillus sp. SG-1]
          Length = 238

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 90/232 (38%), Gaps = 14/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E     E    L  +   D   ++  +   G   +E
Sbjct: 8   LIVDDEDRIRKLLRMYLERENYVIEEAEDGESALELALNNEYDCILLDLMMP--GMDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   +
Sbjct: 66  VCKELRQKKSTPVIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSKT 125

Query: 123 N---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +         +      + + +D       G+   L  +E  +L +L     K   +  +
Sbjct: 126 SYIHTDTKAKDMIVYPHLTIDNDAHRVTADGKDVNLTPKEYELLYFLSKAPDKVFDREHL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDWN 223
              ++  +D   +   V++H+ +LR+KL          + +   +GY  + N
Sbjct: 186 LKEVW-HYDFFGDLRTVDTHVKRLREKLNKVSEQAAKMIVTVWGVGYKFEVN 236


>gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 236

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 99/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +      +    L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGKTGYELALSEKPDLIVLDLMLPE--MDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAESIEEKTEDMEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 224

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +      +   +G  +E  N  +    L+ + +     +   ++  G    
Sbjct: 5   ILVIDDDPKITAMLQRVLTYEGYRVEVAN--DGYTGLKMAQKNPPELLILDIMMPGLDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R  R  + +P++ +S    +++ +   + G DD + KP    E+LARV A+ RR   
Sbjct: 63  EICRRFRRENFIPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALLRRKTN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    +   +++    R+    G +  L  +E  +L+  + +  + + K  I   I+G+ 
Sbjct: 123 SAKVIQFADLKMDLSTREVHRAGVLLSLTSKEFDLLQLFLQHPNQVLTKDTIIDHIWGI- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     NV+E +++ LR+KL        + + R +GY +
Sbjct: 182 DYTGGSNVLEVYVNMLRQKLEEGNRSRLIHTVRGVGYVL 220


>gi|296535704|ref|ZP_06897875.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
 gi|296263965|gb|EFH10419.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
          Length = 238

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +           G  ++     +      + A  D+  ++  L       L
Sbjct: 13  ILVVEDEAPLLTLLRYNLEKQGFRVDEAADGQEALMRVAEAPPDLVLLDWMLPA--LSGL 70

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R        P+I ++     Q  +   D+G DD + KP     ++AR+ A+ RR
Sbjct: 71  EVCRQLRRRPDTRDLPIIMVTARTEDQDAVRALDTGADDYIAKPFVMDALMARIRALLRR 130

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +        + +  D       G    L   E R+LE+ + + G+  ++ Q+  A
Sbjct: 131 SGGVATKGTLAWHDVTMDQDAHRVSRNGRALHLGPTEYRLLEFFLQHPGRVFSREQLLDA 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  VE   V+ HI +LRK +  +   D + + R  GY++D
Sbjct: 191 VWGR-DIHVEPRTVDVHIRRLRKAVNGEGEVDIIRTVRSAGYALD 234


>gi|6448492|emb|CAB61229.1| vanr protein [Bacillus circulans]
          Length = 231

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  + + +           D++ ++  L   G   L
Sbjct: 5   ILVVDDEHDIADLVELYLKNENYTVFKYYTAKEALDCIDKTELDLAILDIMLP--GASGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + IR     P+I ++   S    +     G DD + KP    E++ARV A  RR K 
Sbjct: 63  SICQKIRDKYTYPIIMLTAKDSEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + N      + +  +  +  +  +   L   E  IL  L  N+G  V+  QIF
Sbjct: 123 YSGVTEQNENIIVHSGLVININTHECFLNEKPLSLTPTEFSILRILCENKGNVVSSEQIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+G        N +  HI  LR+K+   +     + +   +GY I+
Sbjct: 183 HEIWGEEYFNKSNNTITVHIRHLREKMNATIDNPKYIKTVWGVGYKIE 230


>gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           ykoG
 gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis]
 gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 228

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S+   ++    E L ++A    S +   ++  G   L
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYSVTIKHNGT--EGLDAAAEGGYSLVLLDVMLPGLSGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   SQ P+I ++   S+   +   D G +D V KP    E+LAR+ A  R+  
Sbjct: 64  EVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNG 123

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         +RV    R+     +   L  RE  +L Y++ +  + + + QI S+
Sbjct: 124 TKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSS 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  +RKKL        + + R +GY+I
Sbjct: 184 VWG-FDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226


>gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 232

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 103/228 (45%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G   E F + +  E ++ +  E  + I   L+  G    
Sbjct: 6   ILIVDDEEHIVELLDFNLKNSGY--ETFIATDGIEAVRIAKEEKPNLILLDLMIPGMDGF 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + I+         +I ++        +   + G DD + KP   RE+LARV A+ RR
Sbjct: 64  DVCKEIKKDKEMKNTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRR 123

Query: 119 LKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E+  ++V  +  + ++QG    L  +E  +L+ L+ N+GK + +  + 
Sbjct: 124 TASFNVEENDIYESKTLKVDFERHEVKIQGNKVDLTLKEFELLQILIKNKGKILKREMLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 DKIWG-YEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFN 230


>gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 233

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    S           R D+  ++  L        
Sbjct: 10  LLVVEDDPNILELLSASLRFAGFDVATATSGSAALTAAKDHRPDLVVLDVMLPD--LDGF 67

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R++R    + P++ ++   +    +     G DD V KP    E+ AR+ A+ RR  
Sbjct: 68  EVIRMMREGGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRSA 127

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +  R     + +  +  +    G+   L   E ++L YLM N  + ++K QI   +
Sbjct: 128 SGEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++N+VES+IS LR+K+ N      + + R +GY +
Sbjct: 188 WN-YDFRGDDNIVESYISYLRRKVDN-TQPRLIHTLRGVGYVL 228


>gi|302543578|ref|ZP_07295920.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461196|gb|EFL24289.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 246

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 100/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G + E   +++  + L+ +   D   I   ++      L
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYATE--TAVDGLDALEKAGTYDPELIVLDVLMPRMDGL 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA    VP++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 71  TAARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSS 130

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      ++    G +R+    R+    G    L R E  +LE  +A+  + + + 
Sbjct: 131 YAAAAGAPFADDDTMSFGDLRMDLTTREVTRGGRRVELTRTEFTLLEMFLAHPRQVLTRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G F+     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 QILKAVWG-FEFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYVL 238


>gi|254511481|ref|ZP_05123548.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium KLH11]
 gi|221535192|gb|EEE38180.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium KLH11]
          Length = 229

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        +G  +    S +    L    R D+  ++  +       +E
Sbjct: 9   LVVEDELAQREVLAYNLDAEGFRVSRAASGDEALLLVEEDRPDIIVLDWMMPN--LSGIE 66

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++        P+I +S        +   ++G DD V KP    E++ARV    RR+
Sbjct: 67  VCRRLKTRPDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRRV 126

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    R E   I + S+        +   L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPATVGIRLEFDDIILDSETHKVSRDDKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALTQHGGEDPVRTVRGAGYAL 228


>gi|153812201|ref|ZP_01964869.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
 gi|149831608|gb|EDM86695.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
          Length = 227

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 107/225 (47%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD + ++             +    + + EE +     E D++ +   ++      
Sbjct: 6   ILVVDDESRMRKLVKDFLEKKNFHV--LEAGDGEEAMDIFYEEKDIALLILDVMMPKMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR +S+VP+I ++     +  L  FD GVD+ ++KP   + ++ARV AI RR  
Sbjct: 64  WEVCREIRKNSKVPIIMLTARGDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTG 123

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N+    G I +        V G+   L  +E  +L Y + N+G  +++ +I ++++
Sbjct: 124 QDAGNDVLSAGGIVIDKSAHQASVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +D   +   +++H+ KLR K+ +K   + + +   +GY  + +
Sbjct: 184 N-YDYFGDARTIDTHVKKLRSKMGDKG--EYIRTVWGMGYKFEVD 225


>gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8]
 gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8]
          Length = 227

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +          +G   E  +              ++  ++  L       
Sbjct: 8   LILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVSPNLVILDLMLPV--MDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S VP++ ++    ++  +   D+G DD + KP    E+LARV A  RR+ 
Sbjct: 66  IEVAKRIRKTSNVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRRVT 125

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +  +GR+         L  +E  +LE L  N GK  ++ +I   ++ 
Sbjct: 126 PAITGEIRVADLIINLEGREVFRGNRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVWP 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      NVV+ +I  LRKKL        + + R +GY +
Sbjct: 186 GYQ--GGSNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 224


>gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G  ++   S E           D+  ++  L        
Sbjct: 8   ILVIEDEHQIADLLRRGLTFKGYLVDTAASGEEGLDKARDNPPDLVILDLMLPE--MSGE 65

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           E+ R +R      +P+I ++   + +  +   D+G DD + KP +  E+LAR+ A  RR 
Sbjct: 66  EVCRRLREGLDPDLPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLRRR 125

Query: 120 KVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +    G + +    R+         L  RE  +LE+L  N G  V+K  IF  ++
Sbjct: 126 QPQEKSIIRVGDLTLNLASREAMRGERKLDLTTREFDLLEFLARNEGHVVSKEAIFERVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +   ++ + V+ +IS LR KL      D + + R +GY +
Sbjct: 186 G-YSFDIDSDAVKVYISYLRSKLTAGGEPDMIHTIRGIGYML 226


>gi|239827570|ref|YP_002950194.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239807863|gb|ACS24928.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 240

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++  ++ +  + L+ +   D   I   L+  G   +
Sbjct: 9   ILVVDDEERIRRLLKMYLERENYIIDEADNGD--DALEKALENDYDVILLDLMLPGRDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 67  EVCKGIREKKATPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 126

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D     V G+   L  +E  +L +L  +  K   + Q
Sbjct: 127 TAYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLARSPDKVFDREQ 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++HI +LR+KL   +      + +   +GY  + 
Sbjct: 187 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGYKFEV 237


>gi|150389552|ref|YP_001319601.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949414|gb|ABR47942.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 234

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    +++  + L+ +   +   +   ++  G   +
Sbjct: 6   ILVVDDDEDIREIITLYLEKEGYQV--ILAMDGHQALECAFSFNPDLVILDMMIPGLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R +   P+I +S   +         +G DD ++KP    E+LAR+ A  RR + 
Sbjct: 64  EVCQALRKNLSTPIIFLSCKSTPSDKSIGLIAGGDDYMSKPFDTMELLARIKAHLRRNRI 123

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N R   G + +  D     V G+   L  +E ++L  L  N  +  +  Q
Sbjct: 124 LENSNYSNAQNKRLCYGDLTINLDNHSVVVYGQEIILSPKEFQLLTLLAKNPNRVFSNEQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +F  ++   +   +   V  HIS +RKK+ R+      + + + +GY  
Sbjct: 184 LFETLWAT-ESFGDHRTVMVHISNIRKKIERDAKKPALIQTVKGVGYKF 231


>gi|331699682|ref|YP_004335921.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954371|gb|AEA28068.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 260

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V+D      G  G  +E             +   DV  ++  L G G   LE
Sbjct: 35  LVVDDDATVRDVVARYLGAAGHDVELALDGPGALRAARTTPPDVVVLDLMLPGLG--GLE 92

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P+I ++        L   + G DD V KP   RE++ RV +I RR   
Sbjct: 93  VCRALRADGDRPPIIMLTALGEEDDRLLGLELGADDYVTKPFSPRELVLRVGSILRRTAA 152

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                E   G +RV    R   + G+   L  RE  +L +L+A+ G+   + ++ S ++G
Sbjct: 153 PATAPELVDGGLRVDPAARVASLDGQPLALTTREFDLLAFLLAHPGQAFTREELLSRVWG 212

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              E  + + V  H+ +LR+K+  +      + +    GY  D
Sbjct: 213 W--EFGDRSTVTVHVRRLREKVEADPTAPRRIATIWGTGYRYD 253


>gi|291562138|emb|CBL40954.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 229

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  N  E       S   D+  ++  L   G    
Sbjct: 4   ILIVEDEESIAELEKDYLELSGFEVEIENDGEAGLKRAISEEFDLFILDLMLP--GVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR     P+I IS        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKKIRETKNTPVIMISAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLSRYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   +++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGTPVNDIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRF 227


>gi|166032765|ref|ZP_02235594.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
           27755]
 gi|166027122|gb|EDR45879.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L    + ++  ++  L        +
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLIRENKYNIILLDVMLP--KLDGFQ 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR +  
Sbjct: 64  VCQQVREFSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTERQ 123

Query: 123 NN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +   G +++  +GR   +      L  +E  +LE L  N+ K  ++  + + 
Sbjct: 124 TEERPKGRQIVKGDMKIDCEGRRVVIGEREVNLTAKEFDLLELLAMNQDKVYSRENLLNI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G ++   +   V+ HI +LR+K+  N      V +K  +GY  
Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIEKNPSDPKYVHTKWGVGYYF 227


>gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas
           albilineans GPE PC73]
 gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas
           albilineans]
          Length = 227

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +++   A    +G +++     E   ++      DV  I+  L       +
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLP--KMSGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R    + P++ ++   S Q  ++    G DD + KP H  E+LARV A+ RR  
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL       P+++ R  GY  
Sbjct: 181 Q-DFDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 220


>gi|283797227|ref|ZP_06346380.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
 gi|291075076|gb|EFE12440.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
 gi|295092411|emb|CBK78518.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 232

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       +G+ ++     E    +      D+  ++  L  +     E
Sbjct: 5   LVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIEMAREKEYDIVLLDVMLPKR--DGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR  S++P+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQAIREFSEMPIIMLTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSTRR 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  +     G +++ +D R   +      L  +E  +LE L+ N  K  ++ ++ 
Sbjct: 123 SRKDAQPQSRTITVGELKLDTDSRRVFIGDREINLTAKEFDLLELLVCNPNKVYSREELL 182

Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G       +   V+ H+ +LR+K+  +      V +K  +GY  
Sbjct: 183 GYVWGNKAAGGGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 230


>gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
 gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
          Length = 240

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 8   ILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGI 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 66  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 126 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 186 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|254829734|ref|ZP_05234389.1| hypothetical protein Lmon1_00195 [Listeria monocytogenes 10403S]
          Length = 228

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + ++    +  +           D++ I+  L       +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEINATFVHDGKMGYEAFFKDDYDIAIIDLMLPN--MDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               + + +  ET   ++    R+   Q E+   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATET-KPFLHTVWGVGYKFD 225


>gi|114320264|ref|YP_741947.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226658|gb|ABI56457.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 229

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A V++  +      G  + G   +   +        D+  ++  L       +
Sbjct: 5   ILLVEDDAAVREMLLLPLRRAGFEITGVADVAQGKAALLERVPDLILLDWMLPDV--SGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  R ++       VPLI ++     +  +   + G DD V KP   RE++AR+ A+ RR
Sbjct: 63  DWARELKRDPFTRDVPLIMLTARGEEEDKVRGLEVGADDYVTKPFSPRELIARIRAVLRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   E   + +          G    +   E R+L + M ++ +   + Q+   
Sbjct: 123 TTPDAGDQPVEVEGLTLDPVSHRVSGNGRTLDMGPTEFRLLHFFMTHQERVYTRGQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEERTVDVHIRRLRKVLAESGHDHLVQTVRGTGYRF 225


>gi|291519643|emb|CBK74864.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 232

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     +    L ++   D+  ++  L        E
Sbjct: 6   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGQEALDLATANHYDMILLDVMLP--KLDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   + G DD + KP +  E+ AR+ AI RR  + 
Sbjct: 64  VCQSIREFSTVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRASIG 123

Query: 123 NNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              A+           G + +    R   + G  + L  +E  +L  L+ N  K  ++  
Sbjct: 124 MAAAQERREEENIIENGDLVLDKSNRRLTILGVEYNLTSKEFDMLLLLVTNPRKVFSRED 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           +   I+G  D   +E  V+ H+ +LR+K+  N      V +K  +GY
Sbjct: 184 LLHTIWGT-DYPGDERTVDVHVRRLREKIEPNPKEPKYVRTKWGVGY 229


>gi|188534673|ref|YP_001908470.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia tasmaniensis Et1/99]
 gi|188029715|emb|CAO97594.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia tasmaniensis Et1/99]
          Length = 229

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +          +    L      D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYHPIEAADYDSAVSLLIEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLTLDPSSHRVMSATQPLEMGPTEYKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEVSGHDRMVQTVRGTGYRF 225


>gi|56696826|ref|YP_167188.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           pomeroyi DSS-3]
 gi|56678563|gb|AAV95229.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           pomeroyi DSS-3]
          Length = 229

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        +G  +    + E    L      D+  ++  +       +E
Sbjct: 9   LVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAMLLVDEDTPDIIVLDWMMPN--LSGIE 66

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++   +    P+I +S        +   ++G DD V KP    E++ARV +  RR+
Sbjct: 67  VCRRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRSQLRRV 126

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S    R E   I + ++        +   L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPSTVGLRLEYEDIVLDAETHKVSRSEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALTQHGGDDPVRTVRGAGYAL 228


>gi|238792116|ref|ZP_04635752.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC
           29909]
 gi|238728747|gb|EEQ20265.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC
           29909]
          Length = 239

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +     +        +   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYQTQWLTRGDEVVAAVRQSPPAIILLDLMLP--GSDGIT 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCRPL 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               +ET P+ +         QG    L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 PQQPSETVPLLIDESRFQASYQGHSLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              V +  ++SHI  LR+KL +  G  P + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWE 232


>gi|229825510|ref|ZP_04451579.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
           49176]
 gi|229790073|gb|EEP26187.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
           49176]
          Length = 223

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 111/225 (49%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD + ++         D +  EG+  +E E+  ++     A   +  I   ++   
Sbjct: 6   ILVVDDESRMRK-----LVKDFLHHEGYEVVEAEDGEKAVDIFFADSSIELIILDVMMPK 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               ++ R IR HS VP+I ++     +  L  F+ GVD+ V+KP   + ++ARV AI R
Sbjct: 61  MDGWQVCREIRRHSTVPIIMLTAKSDEKDELQGFELGVDEYVSKPFSPKILMARVEAILR 120

Query: 118 RLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   VS++  E G I++     +  + G    L  +E  +L Y M N+G  +++ +I + 
Sbjct: 121 RSGAVSDDCLEAGGIKIDRASHEVIIDGSPVDLSVKEFELLLYFMTNKGIALSREKILNN 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   +   +++H+ KLR K+ +K   D + +   +GY  +
Sbjct: 181 VWN-YDYFGDARTIDTHVKKLRAKMGDKG--DLIKTIWGIGYKFE 222


>gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL F2-208]
 gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A]
          Length = 246

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 14  ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGI 71

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 72  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 131

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 132 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 191

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 192 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 243


>gi|206970599|ref|ZP_03231551.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228952360|ref|ZP_04114448.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228964973|ref|ZP_04126075.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229043749|ref|ZP_04191451.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229069533|ref|ZP_04202822.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229079163|ref|ZP_04211712.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229109448|ref|ZP_04239042.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229178389|ref|ZP_04305758.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229190087|ref|ZP_04317093.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|206734235|gb|EDZ51405.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228593416|gb|EEK51229.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228605119|gb|EEK62571.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228674015|gb|EEL29265.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228704180|gb|EEL56617.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228713672|gb|EEL65558.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228725602|gb|EEL76857.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228794714|gb|EEM42218.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228807356|gb|EEM53887.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 228

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEVS 227


>gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 231

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E          L +S R D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPR--LDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTS 122

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +   E        + +    R+         L R E  +LE L+ N  + + +++I  
Sbjct: 123 PVDGDGESAAMTFSDLTLDPVTREVTRGNRSISLTRTEFSLLEMLITNPRRVLTRSRILE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD     N +E ++  LR+K   +     + + R +GY +
Sbjct: 183 EVWG-FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 226


>gi|218232740|ref|YP_002365097.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228962219|ref|ZP_04123659.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229042157|ref|ZP_04189914.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229107932|ref|ZP_04237562.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229143055|ref|ZP_04271491.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229148658|ref|ZP_04276911.1| Two-component response regulator [Bacillus cereus m1550]
 gi|296501083|ref|YP_003662783.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|218160697|gb|ACK60689.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228634819|gb|EEK91395.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228640420|gb|EEK96814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228675530|gb|EEL30744.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228727192|gb|EEL78392.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228797467|gb|EEM44640.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296322135|gb|ADH05063.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 233

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|323705815|ref|ZP_08117387.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534811|gb|EGB24590.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 224

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD   ++D  +     +G +++ F + E         + D+  ++  +   G   
Sbjct: 4   LIYIVDDDKNIRDLMVKYVEKEGYTVKSFENAEAVLDNFEKDKPDMLILDIMMP--GMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR  S VP+I +S        +   + G DD + KP   RE++AR+ +++RR+K
Sbjct: 62  YELCRQIRKKSDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVK 121

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   N+      I +  D R     GE       E  ++++L  N  K   + Q+   ++
Sbjct: 122 MPKRNDEIRIKDIVIVPDERKVIYNGEEIGFTSMEFELIQFLAQNANKAFTREQLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +D   E   V+  + ++RKKL++      + +    GY ++
Sbjct: 182 -KYDSFTETRAVDDMVKRIRKKLQSYGCEFNISTIWGYGYKVE 223


>gi|295697098|ref|YP_003590336.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412700|gb|ADG07192.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 243

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +           G   E   +  E  + L+     D+  ++  L       
Sbjct: 4   ILVVDDEEAILAVLQFHLEKAGYVAETATHPEEVFQRLREGEPVDLIILDHMLPD--MSG 61

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ +I+R     +P+I ++        +   + G DD + KP   RE+ AR+ A+ RR 
Sbjct: 62  LDICKILRQEGITIPIIFLTALDDEVERVLCLEMGADDYITKPFRPRELAARIRAVLRRY 121

Query: 120 KVSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++S N           GP+ +        V G+   L  +E ++L +L  +  K V +  
Sbjct: 122 QLSGNGEQRTADVLHAGPVIIDLAKHTVTVFGQDVSLTLKEFQLLHHLAEHADKVVTRDT 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   I+G F    +  VV+ HIS LR K+  N      + + R +GY +
Sbjct: 182 LLDHIWG-FKYTGDTRVVDVHISHLRNKIEPNPASPQLIKTVRGVGYKL 229


>gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
 gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes]
 gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
          Length = 240

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 8   ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGI 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 66  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 126 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 186 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|331092175|ref|ZP_08341005.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401947|gb|EGG81521.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 225

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 107/228 (46%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA----REDVSAIEAFLIGKG 57
            +++DD + ++         DG     F  LE  + L++       +D++ +   ++   
Sbjct: 6   ILIVDDESRMRKLVKDFLERDG-----FTVLEAGDGLEAMDVFYDNKDIALLILDVMMPK 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               ++ R +R  SQVP+I ++     +  L  FD GVD+ + KP   + ++ARV AI R
Sbjct: 61  MDGWQVCREVRQVSQVPIIMLTARADEKDELQGFDLGVDEYIAKPFSPKILVARVEAILR 120

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R  V  S    + G I +        +  +   L  +E  +L Y + N+G  +++ +I +
Sbjct: 121 RTNVLFSEESIDAGGIVIDKTAHLVTIDNQPIELSYKEFELLSYFVENQGIALSREKILN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++  +D   +   +++H+ KLR KL +K   D + +   +GY  + +
Sbjct: 181 NVWN-YDYFGDARTIDTHVKKLRSKLGDKG--DYIKTIWGMGYKFEVS 225


>gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++   +S      L    + D+  ++  +        
Sbjct: 6   ILVVDDEDKLLDLIKNFLEKEGFAVTCADSGVEALKLLEKRKFDLVVLDIMMPEV--SGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR   Q+P+I ++        L   + G DD + KP   RE+ AR+ A+ RR K 
Sbjct: 64  DVLRRIREKIQIPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRRAKP 123

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S   N   E G IR+  + +   + G    L   E RIL  LMA+ G  V++ +I   ++
Sbjct: 124 SEAANTILEYGGIRLDLNEKTASLNGRPLFLTPTEFRILAILMAHPGTIVSRLRILEEVF 183

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G + E  E N +++HIS LRKKL  N L    + +    GY +
Sbjct: 184 GGYYEGYERN-LDTHISNLRKKLGDNPLNPRYIKTVYGTGYKL 225


>gi|239626272|ref|ZP_04669303.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520502|gb|EEQ60368.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 226

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 109/224 (48%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD A ++        + G ++    + + EE + +  A++D++ +   ++      
Sbjct: 6   ILVVDDEARMRKLVRDFLTNKGFTV--IEAGDGEEAVDTFFAQKDIALVLLDVMMPKMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR +SQVP+I ++     +  L  F  GVD+ ++KP   + ++ARV AI RR  
Sbjct: 64  WEVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSN 123

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            VS      G I +        + G    L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 124 VVSTENMNVGGICIDKAAHQVTIDGREIELSYKEFELLSYFVENQGIALSREKILNNVWN 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR K+  K   D + +   +GY  + +
Sbjct: 184 -YDYFGDARTIDTHVKKLRSKMGEKG--DYIKTIWGMGYKFEVS 224


>gi|121535008|ref|ZP_01666826.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306421|gb|EAX47345.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     A    +G S+                  D+  ++  L         
Sbjct: 4   LVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPS--LDGWG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++        +   + G DD V KP   +E+LAR+ AI+RRL+ +
Sbjct: 62  VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + R       + G   +  + R   + G    L   E ++LE  +A+ G+  ++ Q+   
Sbjct: 122 SRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   +     E  V+SHI  LRKKL  +      + +   +GY +
Sbjct: 182 V-QDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKL 225


>gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01]
 gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01]
          Length = 224

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +          +G   E                 ++  ++  L       
Sbjct: 5   LILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFREVNPNLVILDLMLPV--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S VP++ ++    ++  ++  D+G DD + KP    E+LARV A  RR+ 
Sbjct: 63  IEVAKRIRKTSNVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVS 122

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +  +GR+    G    L  +E  +LE L  N GK  ++ +I   ++ 
Sbjct: 123 PAITGEIRVADLIINLEGREVFRSGRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVWP 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      NVV+ +I  LRKKL        + + R +GY +
Sbjct: 183 GYQ--GGSNVVDVYIGYLRKKLEAAGERRLIHTVRGVGYVL 221


>gi|312962580|ref|ZP_07777070.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6]
 gi|311283160|gb|EFQ61751.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6]
          Length = 225

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  +E   + E   +       D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLFTRLTDSGHVVEAVANAEEALYQTGQFNHDLAIIDLGLPGMG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R  ++  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTQAKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARMNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  E   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLDEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL    GF P+D+ R LGY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEGPSGFKPIDTVRGLGYLFN 221


>gi|312862953|ref|ZP_07723193.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus vestibularis F0396]
 gi|322516692|ref|ZP_08069601.1| response regulator [Streptococcus vestibularis ATCC 49124]
 gi|311101813|gb|EFQ60016.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus vestibularis F0396]
 gi|322124725|gb|EFX96163.1| response regulator [Streptococcus vestibularis ATCC 49124]
          Length = 235

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++  + D+  ++  L       
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEA-EKPDLVILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR +
Sbjct: 61  LEVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTE 120

Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G + +  D    + +G    L  RE  +L +L  + G+ + 
Sbjct: 121 TIETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|227879006|ref|ZP_03996902.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256844225|ref|ZP_05549711.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849375|ref|ZP_05554808.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|262047880|ref|ZP_06020828.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380062|ref|ZP_06626158.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295691935|ref|YP_003600545.1| response regulator [Lactobacillus crispatus ST1]
 gi|312977021|ref|ZP_07788770.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
 gi|227861395|gb|EEJ69018.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256613303|gb|EEU18506.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256714151|gb|EEU29139.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|260571824|gb|EEX28397.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290923376|gb|EFE00283.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295030041|emb|CBL49520.1| Response regulator [Lactobacillus crispatus ST1]
 gi|310896349|gb|EFQ45414.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
          Length = 238

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 99/231 (42%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L  K    L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    + ++   + G + +  D    E  G+   L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAASQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  + +LR+K+ +  +    + ++R +GY +
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYV 232


>gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 245

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      E       S   D+  ++  L       LE
Sbjct: 16  LVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLP--KIDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA    P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +
Sbjct: 74  VAKQVRAKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDAT 133

Query: 123 NNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +          + G + +  D      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 134 VSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHLL 193

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 194 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 239


>gi|2832806|emb|CAA11730.1| putative DNA binding response regulator, YvrH [Bacillus subtilis]
          Length = 369

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 8/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G      ++   EE +       V  I   ++  G    
Sbjct: 138 ILIVDDEKAIVDMIKRVLEKEGYR-NILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGF 196

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E   +IR +S  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R   
Sbjct: 197 EACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 256

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                SN               +  V GE      +  ++L+Y   +    ++K QI+  
Sbjct: 257 SKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 316

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           ++G +    + N V  HI KLR+K  R+    + + + R LGY    N
Sbjct: 317 VWG-YPSYGDNNTVMVHIRKLREKTERDPSNPEYIVTVRGLGYRFIPN 363


>gi|310827086|ref|YP_003959443.1| regulatory protein VanR [Eubacterium limosum KIST612]
 gi|308738820|gb|ADO36480.1| regulatory protein VanR [Eubacterium limosum KIST612]
          Length = 229

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D      G++G ++  F S +           +++ ++  +        
Sbjct: 5   ILVVDDEQEIADLVELYLGNEGYAVRKFYSAQEALASGLENPPELAVLDVMMPE--LDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R     P+I ++        +     G DD V KP    E++ARV A  RR + 
Sbjct: 63  TLCRRLREKYTFPIIMLTAREEEIDKITGLAIGADDYVTKPFRPLELVARVKAQLRRSQR 122

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N         A    + +  +     +  +   L   E  IL  L  NRG+ ++  ++F
Sbjct: 123 YNGGQQEAGAIAAYRGLTLNRETHVCTLDEKPVELTPIEFSILWTLCKNRGRVISSEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G        N V  HI  LR+K+++       + +   +GY I
Sbjct: 183 KEVWGEKYFTGN-NTVMVHIRHLREKMQDSAENPRYIKTVWGVGYKI 228


>gi|254478803|ref|ZP_05092170.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035258|gb|EEB75965.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 231

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   ILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLP--GISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRLRQFSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE        + V         +G V  L   E +IL+ L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIRTVYGVGYKF 226


>gi|229127391|ref|ZP_04256386.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|229144600|ref|ZP_04273002.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229150217|ref|ZP_04278439.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|296502577|ref|YP_003664277.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228633336|gb|EEK89943.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228638840|gb|EEK95268.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228656073|gb|EEL11916.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|296323629|gb|ADH06557.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 228

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L A  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEVS 227


>gi|325265320|ref|ZP_08132045.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029499|gb|EGB90789.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 234

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  I      G +    +       L  +   D+  ++  +        
Sbjct: 16  ILIVEDEKNMQEIMIEYMRKGGHTCFAADDGVDALMLLKNHPMDLMVLDIMMPH--LDGF 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + ++ R  S +P+I ++   S    L  ++ G DD + KP   R +LA+  A+ RR   
Sbjct: 74  SVCKMAREMSSLPIIMLTARSSEDDKLKGYEYGADDYMTKPFSPRVLLAKANALLRRSSS 133

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G I +        V G+   L  +E  +L + + N G+  ++ Q+ + I+G 
Sbjct: 134 GKTDSLHAGKITLIPASHKVFVDGQEVTLTHKEYELLHFFLTNSGQIFSRDQLLNRIWG- 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D A     V++HI  LR+KL +      + +    GY  +
Sbjct: 193 YDFAGTTRTVDTHIKTLRQKLGD--ESRHIVTLIRSGYKFE 231


>gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 227

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG  ++   + +  E L+   ++    I   ++      L
Sbjct: 4   ILIVDDDRQIADLIEVYLKNDGYIID--KAGDGMEALKKLEQDPPDLIVLDIMMPKMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E  + +R ++QVP++ +S        +    +G DD + KP +  E+ ARV A+ RR   
Sbjct: 62  EFCKYVRKNNQVPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALLRRANY 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +++    G + +         +G    L  RE  IL  L  NRG+  A  +IF  
Sbjct: 122 KTTGKADDVLYIGSVAIDKRSHGVTAEGSEIKLTAREFEILYLLAKNRGRVYASEEIFEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++    E      V  HIS +R+KL   L G   + +   +GY I+
Sbjct: 182 VWNEPGE-GSNKTVMVHISNIREKLEAALPGESVIQTVWGVGYKIE 226


>gi|253579765|ref|ZP_04857033.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848764|gb|EES76726.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
           M   ++D   +++  I      G    GF +             ++  ++  L G  G  
Sbjct: 1   MIYCVEDERNIRELLIYTLETTGFKARGFGNGNELMKALKEEIPELILLDIMLPGDDGYT 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +LE  + + +   VP+I ++   +    +   + G DD + KP    E +ARV A+ RR 
Sbjct: 61  ILEQLKSMPSVKDVPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLRRS 120

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N         + +     +   + E   L R+E  +L+YL+ N+G  + + QI   +
Sbjct: 121 ARQNEDKELHYDELYLNVGRHEVRYREEKVDLTRKEFELLQYLLENKGLVMTRNQILCHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   E   V+ H+  LR+KL      + +++ R +GY I
Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGEAG--NLIETVRGVGYRI 220


>gi|228955968|ref|ZP_04117903.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228803712|gb|EEM50396.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 233

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     ++  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEIHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 227

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D    L   +G  +E                 D+  ++  L   G    E
Sbjct: 5   LIVEDEPDLADPLAYLLRREGYEVEIAEDGALALSAFHDRGADIVLLDLMLP--GMPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR    
Sbjct: 63  VCRQLRLSSHVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVLRRRTPD 122

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +      G + +  D     V G    +P +E  +LE LM N G+ + + Q+   +
Sbjct: 123 DADLDDRILSGGRVTLDIDRHTVAVDGNEINMPLKEFELLEVLMRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ HI ++R ++         + + R LGY  +
Sbjct: 183 WGT-DYFGDTKTLDVHIKRIRSRIEQSPSEPAMLVTVRGLGYRFE 226


>gi|228989436|ref|ZP_04149424.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228770307|gb|EEM18883.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 233

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G  +    + +  E L    + +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRDLITIYLKNEGYKV--LQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   IR   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKIREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELMARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + N  E G +++        V+ E   L  RE  ILE L  N     +  QI+
Sbjct: 124 MNGFVVQNENEIEIGNMKINVSTHKVVVENEEVKLTPREFSILELLARNPEMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K          + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKIREKTEENPRKPIYIKTVWGVGYKIEKD 232


>gi|156742742|ref|YP_001432871.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156234070|gb|ABU58853.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 231

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G  +           L  S + D+  ++  L   G   L
Sbjct: 6   LLIVEDEDRLRNLLRGYLEREGFRIVQARDGVQALSLARSEQPDLIILDLMLP--GIDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S   ++ ++        +   + G DD + KP   RE++ARV A++RR + 
Sbjct: 64  EVCHRLRTFSDAYVLMLTAKAEEMDRVVGLEIGADDYLTKPFSPRELVARVRAMFRRPRH 123

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +++       ++GP+ +     +  + GE   L   E  +L  L +  G+   + Q+   
Sbjct: 124 ADDEPAPLLVQSGPLTIDVARHEALLAGEPLKLTNLEYALLSVLASAPGRVFTRAQLIER 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++G  D   +++V++ HI+ LRKKL  +      + + R +GY  
Sbjct: 184 VWGN-DYFGDDHVIDVHIANLRKKLGDDPTRPTFIMTVRGIGYRF 227


>gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 228

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G ++         E L+ +  E+   I   L+  G    
Sbjct: 5   ILIIEDEKKIARFLQIELEHEGYNV--AIEYSGNEGLRRALDENYDLIILDLMLPGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + IR  S +P+I +S    ++  +   D G DD + KP    E++AR+    R+ +K
Sbjct: 63  SVLKEIRKKSSIPVIILSAKDEIKDKVMGLDIGADDYLTKPFSIEELMARIRNALRKNIK 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +     I +     +    G+   L ++E  +L+YL+ N    + +  I   ++G 
Sbjct: 123 ANTKKISYDGITMDLSTYEVLRDGQKIELTKKEFDLLKYLIINAEIVLTRENILENVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   E N+V+ +I  LR K+        + + R +GYS+
Sbjct: 182 YNYIGETNIVDVYIRYLRSKIDEPFSNKLIQTIRGVGYSL 221


>gi|169343589|ref|ZP_02864588.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298149|gb|EDS80239.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 269

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 13/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEK 59
           ++++D   ++         D    EGFN LE    EE L+  +   V      ++     
Sbjct: 52  LIVEDEIRIR-----FLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 106

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L + R IR  S  P+I ++     +  L  ++ G DD + KP   + +LA+  A+ RR 
Sbjct: 107 GLAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT 166

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N  N  +   + +     + ++ GE   L  +E  +L YL +N G  +++ +I   +
Sbjct: 167 GTLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNV 226

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   +   V+++I +LR+KL +K   + + + R  GY  + 
Sbjct: 227 WG-YDYFGDIRTVDTNIKRLREKLLDK--ANYIATVRGSGYKFEV 268


>gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
 gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
          Length = 237

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +    +      L      D+  ++  L        
Sbjct: 12  LLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHHPDLCVLDVMLPD--MDGF 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   + +P++ ++   S+   +     G DD V KP    E++AR+ A+ RR +
Sbjct: 70  AVTRKLRESGRRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTR 129

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                N+      + +  D  +    G V      E ++L YLM N  + ++K QI   +
Sbjct: 130 GDIDGNSALRFEDLELDEDSHEVRRAGRVIETSPTEFKLLRYLMLNPNRVLSKAQILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+K+  +     + +KR +GY +
Sbjct: 190 W-EYDFRGESGIVESYISYLRRKIDTEGLPPLIHTKRGVGYVL 231


>gi|227820734|ref|YP_002824704.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium fredii NGR234]
 gi|227339733|gb|ACP23951.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium fredii NGR234]
          Length = 227

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E        D+  ++  L   G   +
Sbjct: 5   IAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLP--GVSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +    +G DD V KP    E++ARV A+ RR
Sbjct: 63  ELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K    +     G I +  +      +     L   E R+LE+LM++ G+  +++Q+   
Sbjct: 123 AKPEVLSTVLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 183 VWG-HDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226


>gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia]
 gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
 gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 227

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +++   A    +G +++     E   ++      DV  I+  L       +
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLP--KMSGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R    + P++ ++   S Q  ++    G DD + KP H  E+LARV A+ RR  
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVAGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL       P+++ R  GY  
Sbjct: 181 Q-DFDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 220


>gi|312868262|ref|ZP_07728462.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
 gi|311096007|gb|EFQ54251.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
          Length = 233

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 103/234 (44%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEK 59
            +++DD   + D        +G  +    + +  E L+  S+   DV  ++  L      
Sbjct: 4   ILVVDDEKPISDIIKFNMAKEGYEV--LTAFDGREALEVFSAENPDVIILDLMLPE--ID 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+ R IR  S VP+I +S   +    +   + G DD V KP  +RE+ ARV A+ RR 
Sbjct: 60  GLEVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRS 119

Query: 120 KV---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +          ++     G + +  D        +   L  RE  +L +L  + G+ + +
Sbjct: 120 EFAADPQFEKDADTEIVIGDLHILPDAFLVRKGNKELDLTHREFELLYHLATHVGQVMTR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  + +LR+K+ +  G  + + ++R +GY +  N
Sbjct: 180 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|114706443|ref|ZP_01439345.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina
           pelagi HTCC2506]
 gi|114538304|gb|EAU41426.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina
           pelagi HTCC2506]
          Length = 246

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G  +E     +  +        D+  ++  L   G   +E+
Sbjct: 7   VVEDEEALGVLLRYNLEAEGYEVEVIARGDEADLRLKEDTPDLLVLDWMLP--GLSGVEI 64

Query: 64  PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R +R        P+I ++        +     G DD V KP   RE  ARV A+ RR  
Sbjct: 65  CRRLRQRPDTAQLPVIMLTARGEESERVQGLSVGADDYVVKPFSMREFTARVKAMMRRAS 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    G + +          G    L   E ++LE+LM   G+   + Q+   ++
Sbjct: 125 PEKVASVLSAGDLELDRSAHRVRRAGRELRLGPTEFKLLEFLMQAPGRVFTREQLLDGVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  V+E  V+ H+ +LRK +      DP+ + R  GY++D
Sbjct: 185 GR-DIYVDERTVDVHVGRLRKAINRARDRDPIRTVRGAGYALD 226


>gi|320532510|ref|ZP_08033327.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135272|gb|EFW27403.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 243

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 107/232 (46%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSARE------DVSAIEAFLI 54
            +L++D    +D        DG  + E  +     E  ++S R       D+  ++  L 
Sbjct: 10  ILLVEDEENFRDPLALGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLMLP 69

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                  E+   IR  S VP+I ++   +    +   + G DD V KP  +RE+LAR+ A
Sbjct: 70  R--LDGTEVCTRIRRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 127

Query: 115 IYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + RR + +    E     GP+R+  +  +  V GEV  +P RE  +LE  + N G+ + +
Sbjct: 128 VLRRSRDTGPELEPVLVAGPVRMDVERHEVRVDGEVVAIPLREFELLELFLRNPGRVLTR 187

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +QI   ++G  +   +   ++ H+ +LR ++  +      + + R LGY +D
Sbjct: 188 SQIIERLWGP-EYGGDTKTLDVHVKRLRGRIEADASKPVLITTVRGLGYRLD 238


>gi|300721765|ref|YP_003711043.1| response regulator in two-component regulatory system with PhoR
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628260|emb|CBJ88819.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 229

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +   +G         +      S    D+  ++  L   G   +
Sbjct: 5   ILVVEDEVPIREMVCFVLEQNGYQAIEAEDYDTAIRRLSEPYPDLVLLDWMLP--GGSGI 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + ++       +P+I ++     +  +   D G DD + KP   +E++ARV A+ RR
Sbjct: 63  QLIKHMKRDHNTKTIPVIMVTARAEEEDRVRGLDVGADDYITKPFSPKELIARVKAVLRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +        + +         QG    +   E ++L + M +  +  ++ Q+   
Sbjct: 123 ISPMEAEEVINMDGLILDPSSHRVSSQGLDLNMGPTEFKLLHFFMTHPERVYSREQLLDY 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEAGKHDKMVQTVRGTGYRF 225


>gi|18310907|ref|NP_562841.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18145589|dbj|BAB81631.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 265

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 13/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEK 59
           ++++D   ++         D    EGFN LE    EE L+  +   V      ++     
Sbjct: 48  LIVEDEIRIR-----FLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 102

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L + R IR  S  P+I ++     +  L  ++ G DD + KP   + +LA+  A+ RR 
Sbjct: 103 GLAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT 162

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N  N  +   + +     + ++ GE   L  +E  +L YL +N G  +++ +I   +
Sbjct: 163 GTLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNV 222

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   +   V+++I +LR+KL +K   + + + R  GY  + 
Sbjct: 223 WG-YDYFGDIRTVDTNIKRLREKLLDK--ANYIATVRGSGYKFEV 264


>gi|206977756|ref|ZP_03238647.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962018|ref|YP_002340588.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141265|ref|ZP_04269803.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST26]
 gi|206744057|gb|EDZ55473.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065662|gb|ACJ79912.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228642046|gb|EEK98339.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST26]
          Length = 230

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|148657917|ref|YP_001278122.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570027|gb|ABQ92172.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 230

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEK 59
            +L++D  ++ +        +G ++   N+ +    L+ + R+  D+  ++  L      
Sbjct: 6   ILLVEDDPILSETLRYNLEREGYAV--INAPDGVVGLERARRDQPDMVILDVMLPR--LD 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + RI+R  S+VP++ ++        +   + G DD V KP    E+LARV AI RR 
Sbjct: 62  GFSVCRILRQESEVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRS 121

Query: 120 KVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      + G IR+ +  R          L ++E  +L  LM NRG  +++  +  
Sbjct: 122 DRRISALREVLDAGAIRLDTGSRRAWRDDVELNLSQKEFDLLACLMRNRGIALSRDVLLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            ++G +D   +   V+ HI  LR+K+    G    + + R +GY  +
Sbjct: 182 RVWG-YDFLGDSRTVDVHIRWLREKVEPDPGKPTYIQTVRGIGYRFE 227


>gi|308068988|ref|YP_003870593.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858267|gb|ADM70055.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 222

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +   +      E  + L+S+  E+   I   L+  G   +
Sbjct: 4   ILLIEDEKNLARFIELELKHESYEVTV--EYEGRKGLESALSEEWDIILLDLMLPGINGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR   Q P+I ++    +   +   DSG DD + KP    E+LAR+ ++ RR   
Sbjct: 62  EVCRRIRKTKQTPIIMLTARDGVMDKVMGLDSGADDYIPKPFAIEELLARMRSLLRRSGF 121

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +  +     + + S+ R      ++  L +RE  +L  LM N G+ + + ++   I+G
Sbjct: 122 VEDSKQITYNGLVLDSEARILTKDQQIIELTKREFDLLSILMHNIGRVMTRERLLELIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  VE NVV+ +I  LR K+        + + R LGY I
Sbjct: 182 -YDSEVETNVVDVYIRYLRSKIDEPGEASFIQTLRGLGYVI 221


>gi|30020095|ref|NP_831726.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218235313|ref|YP_002366679.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|29895645|gb|AAP08927.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218163270|gb|ACK63262.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 225

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L A  G+  ++ Q+   I+G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEVS 224


>gi|311030763|ref|ZP_07708853.1| two component transcriptional regulator [Bacillus sp. m3-13]
          Length = 239

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +E  ++      +      DV  ++  +   G   +
Sbjct: 7   ILVVDDEDRIRRLLKMYLERENYVIEEADNGNTALEMALEKEYDVILLDVMMP--GMDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCKEIREKKATPIIMLTAKGEETNRVQGFEMGTDDYIVKPFSPREVVLRVKALLRRSSS 124

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D      +G+   L  +E  +L +L  +  K   + Q
Sbjct: 125 TTFLTTETTTKDVIVFPHLTIDNDAHRVTSEGKEINLTPKEYELLYFLAKSPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSEPASKMIVTVWGVGYKFEV 235


>gi|16803547|ref|NP_465032.1| hypothetical protein lmo1507 [Listeria monocytogenes EGD-e]
 gi|47097204|ref|ZP_00234768.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224501553|ref|ZP_03669860.1| hypothetical protein LmonFR_03382 [Listeria monocytogenes FSL
           R2-561]
 gi|254828259|ref|ZP_05232946.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254898327|ref|ZP_05258251.1| hypothetical protein LmonJ_00890 [Listeria monocytogenes J0161]
 gi|254912181|ref|ZP_05262193.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254936509|ref|ZP_05268206.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284801897|ref|YP_003413762.1| hypothetical protein LM5578_1652 [Listeria monocytogenes 08-5578]
 gi|284995039|ref|YP_003416807.1| hypothetical protein LM5923_1604 [Listeria monocytogenes 08-5923]
 gi|16410936|emb|CAC99585.1| lmo1507 [Listeria monocytogenes EGD-e]
 gi|47014418|gb|EAL05387.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258600647|gb|EEW13972.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258609103|gb|EEW21711.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284057459|gb|ADB68400.1| hypothetical protein LM5578_1652 [Listeria monocytogenes 08-5578]
 gi|284060506|gb|ADB71445.1| hypothetical protein LM5923_1604 [Listeria monocytogenes 08-5923]
 gi|293590154|gb|EFF98488.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 228

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +   ++     + +   ++  ++D       L+      +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKE--EIDATFVHDGKMGYEAFFKDDYDIAIIDLMLPNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               + + +  ET   ++    R+   Q E+   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATET-KPFLHTVWGVGYKFD 225


>gi|238922876|ref|YP_002936389.1| two-component system response regulator [Eubacterium rectale ATCC
           33656]
 gi|238874548|gb|ACR74255.1| two-component system response regulator [Eubacterium rectale ATCC
           33656]
          Length = 229

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N          +   D+  ++  L   G    
Sbjct: 4   ILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLP--GIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR     P++ +S        +     G DD V KP    E++ARV A   R + 
Sbjct: 62  EICKRIREKKNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   I++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + D   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 KEIWNM-DSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRF 227


>gi|55821169|ref|YP_139611.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55737154|gb|AAV60796.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
           [Streptococcus thermophilus LMG 18311]
          Length = 235

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++  + D+  ++  L       
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEA-KKPDLVILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR +
Sbjct: 61  LEVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTE 120

Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G + +  D    + +G    L  RE  +L +L  + G+ + 
Sbjct: 121 TIETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|304438293|ref|ZP_07398234.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368659|gb|EFM22343.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 228

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G + E   +             D+  ++  L   G   +E
Sbjct: 8   LIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLP--GMDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   +++  ++  D G DD + KP    E++AR+    RR  +S
Sbjct: 66  ICRRVRTVSNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARIRNALRRRDIS 125

Query: 123 ----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++R     + +F    + +V GE   L +RE  +LEYL+ N+   + + QI   ++
Sbjct: 126 TDDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   E NVV+ +I  LR KL ++     + + R +GY +
Sbjct: 186 G-FDYTGETNVVDVYIRYLRAKLDDRFHKKYIYTVRGVGYVV 226


>gi|254788364|ref|YP_003075793.1| phosphate regulon transcriptional regulator PhoB [Teredinibacter
           turnerae T7901]
 gi|237687065|gb|ACR14329.1| phosphate regulon transcriptional regulatory protein PhoB
           [Teredinibacter turnerae T7901]
          Length = 235

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D           ++      +    +    R D+  ++  +   G   +
Sbjct: 6   ILVVDDERAIRDMLRVALEMADYAVLEAADAQEAHQIVVDTRPDLILLDWMMP--GVSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R +++     ++P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  EFARRLKSQEVTREIPIIMLTAKGEEDNKIQGLEIGADDYITKPFSPRELVARLKAVLRR 123

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S +      + +        + G    L   E R+LE+ + ++ +  ++ Q+   
Sbjct: 124 SDSLSSGDPITVENLCLDPTSHRVTIAGMPVQLGPTEYRLLEFFLTHQERVYSRNQLLDY 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L+ +     V + R  GY  
Sbjct: 184 VWGG-NVYVEERTVDVHIRRLRKALKLENHDRLVQTVRGAGYRF 226


>gi|257867576|ref|ZP_05647229.1| response regulator [Enterococcus casseliflavus EC30]
 gi|257873905|ref|ZP_05653558.1| response regulator [Enterococcus casseliflavus EC10]
 gi|257877663|ref|ZP_05657316.1| response regulator [Enterococcus casseliflavus EC20]
 gi|257801632|gb|EEV30562.1| response regulator [Enterococcus casseliflavus EC30]
 gi|257808069|gb|EEV36891.1| response regulator [Enterococcus casseliflavus EC10]
 gi|257811829|gb|EEV40649.1| response regulator [Enterococcus casseliflavus EC20]
          Length = 240

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 103/236 (43%), Gaps = 22/236 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE----DVSAIEAFLIGKG 57
            ++I+D   V +     F ++G   E     + +E L++ A E    D+  ++  L    
Sbjct: 6   ILMIEDNESVSEMMQMFFLNEGW--EAAFKYDGKEGLEAFAAEPDKWDMITLDLNLPS-- 61

Query: 58  EKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              + + R IR   S VP+I ++   S    +   + G DD V KP     ++AR+ A++
Sbjct: 62  MDGMMVAREIRKISSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALH 121

Query: 117 RRLKVSNNR----------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
           RR ++                T   ++ +  R+  + G+    L  +E  +L  L     
Sbjct: 122 RRSELVEKTTPEASDATFDVVTDHFKMNTKTREAYLNGKPIDGLTPKEFDLLYTLAKKPR 181

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 182 QVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 235


>gi|171741317|ref|ZP_02917124.1| hypothetical protein BIFDEN_00396 [Bifidobacterium dentium ATCC
           27678]
 gi|283455323|ref|YP_003359887.1| response regulator protein Vicr [Bifidobacterium dentium Bd1]
 gi|171276931|gb|EDT44592.1| hypothetical protein BIFDEN_00396 [Bifidobacterium dentium ATCC
           27678]
 gi|283101957|gb|ADB09063.1| Response regulator protein VicR [Bifidobacterium dentium Bd1]
          Length = 234

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 104/230 (45%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +     +G  +    +   E+ L+   +  V  +   L+  G    
Sbjct: 4   ILIVEDEESYREPLVYQPTREGYDVSA--AATGEDGLELFTQGGVDLVLLDLMLPGLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP+I ++   +    +   + G DD V KP   RE+LARV A+ RR ++
Sbjct: 62  ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARVRAVLRRNQM 121

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G I +     +  V+GE    P +E  +LEYLM N+G+ + + Q
Sbjct: 122 VAESDSASDDDIPLVCGDISMKIGQHEVSVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ID
Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 230


>gi|239637303|ref|ZP_04678290.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|239597140|gb|EEQ79650.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|330685295|gb|EGG96956.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU121]
          Length = 233

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 6   VVVDDEKPIADILEFNLKKEGYDVFCAYDGNDAVDLIYEEEPDIVLLDIMLP--GRDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 64  VCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + N      I ++ D    + +G+   L  RE  +  YL  + G+ + +  + 
Sbjct: 124 PAQEVNDATNEISIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229


>gi|116619023|ref|YP_819394.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097870|gb|ABJ63021.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 235

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      +    + +    D+  ++  L       +E
Sbjct: 5   LVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEV--DGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKV 121
           + R IR+ S VP+I ++   S    +   + G DD V KP  +RE++ARV A  R R  V
Sbjct: 63  VLRQIRSKSDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKSV 122

Query: 122 SNNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S    ET         G + +          G    L  RE  +L YL  + G+ + +  
Sbjct: 123 SQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFELLYYLAQHIGQVMTREH 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 183 LLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230


>gi|42781109|ref|NP_978356.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737030|gb|AAS40964.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 225

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVITGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 224


>gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51]
 gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 99/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   A    +G  +    +      L      D+  ++  L   G    
Sbjct: 3   ILLVDDEKNISNVLKAYLQQEGFQVTTAINGLVALTLFKENPYDLVLLDLMLP--GLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++    L+  ++ F+ G DD ++KP   RE++ARV A+ RR  +
Sbjct: 61  EICKEIRKISAVPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRRTDI 120

Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + + +   +     EV PL   E +IL  L    G+  ++ Q+   
Sbjct: 121 ETSPLAEVISYDNGLVIDNSRHEVRFNKEVIPLTPTEFKILGSLAKYPGRVYSRGQLVEI 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + G  D   ++ V+++HI KLR+KL         + +   +GY  +
Sbjct: 181 VQG-HDFGGDDRVIDAHIKKLRQKLEKVPSDPKIILTVYGVGYKFN 225


>gi|331005887|ref|ZP_08329239.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC1989]
 gi|330420331|gb|EGG94645.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC1989]
          Length = 233

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGD-DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD + ++D         D   LE  ++ +    L    +  +  ++  L   G   
Sbjct: 7   ILIVDDESAIRDMLRVALEMADYHCLEAADT-QSAHALIIDQKPSLILLDWMLP--GTSG 63

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           ++L R ++     + +P+I ++        +   + G DD + KP   RE++AR+ A+ R
Sbjct: 64  IDLARRLKKDEFTADIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 123

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +   +    E   +R+   G    +  E   +   E R+L + + ++ +   + Q+  
Sbjct: 124 RTEGISAAELIEVEGLRMDPVGHVVTINNEPLQMGPTEYRLLAFFLTHQDRVYTRGQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  +  VEE  V+ HI +LRK L +      + + R  GY  
Sbjct: 184 HVWGG-NVYVEERTVDVHIRRLRKALTSH--DRFIQTVRGAGYRF 225


>gi|291535098|emb|CBL08210.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 232

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 102/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD + ++         +   +    + + E  L    +E +++ I   ++      
Sbjct: 6   ILVVDDESRMRKLVRDFLVREDYEV--LEAGDGETALDIFYQEKNIALIILDVMMPKMNG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR  S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR+ 
Sbjct: 64  WEVCREIRETSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRRIG 123

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +         G I +        V G    L  +E  +L Y M N G  +++ +I + +
Sbjct: 124 KAPEEGKLLSIGGIVIDQTAHTVTVDGRQIELSFKEFELLTYFMENEGIALSREKILNHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +D   +   +++H+ KLR K+  K   D + +   +GY  +
Sbjct: 184 WN-YDYFGDARTIDTHVKKLRAKIGEKG--DYIKTIWGMGYKFE 224


>gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 228

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  ++          L  S   D   ++  L   G   +
Sbjct: 3   ILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILP--GMSGI 60

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           E+ R +R    SQVP++ ++   S++  ++  + G DD + KP   RE++ARV A+ RR 
Sbjct: 61  EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + V     + G + +    R+   +GE   L  +E  +LE  M N G   ++ QI   ++
Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                    N+V+ ++  LRKKL+     + +++   +GY +
Sbjct: 181 -ESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRL 221


>gi|188580664|ref|YP_001924109.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179344162|gb|ACB79574.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 225

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +A   + G   +     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKA--DGV 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +   RA  + P+I ++        +D FD+G DD V KP H  E++ARV AI RR  
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y 
Sbjct: 121 GHASSQISCGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  + +LRKKL      D + + R LGY ID N
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLIDPN 219


>gi|303256488|ref|ZP_07342502.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|330999059|ref|ZP_08322783.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
 gi|302859979|gb|EFL83056.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|329575646|gb|EGG57177.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
          Length = 231

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 106/223 (47%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   + +         G+ + +  N  E ++ L++ A+ D+  ++  L       L
Sbjct: 7   LIVEDEPSILELISYTCRTSGMEVRKAANVAEAKKNLEA-AKPDIILLDWMLPDC--AGL 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  R +R++     +P+I ++        +   ++G DD V KP   RE++AR+ A+ RR
Sbjct: 64  DWLRELRSYHSNESLPVIMLTARGQEDDRVRGLEAGADDYVTKPFSPRELVARIRAVIRR 123

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    GP+ + ++  +  V G+   L   E + L+    + G+  ++ Q+   
Sbjct: 124 KGGDALPDTLRVGPLEIDAERYEARVNGKPLRLSAVEFKFLQVFAKHPGRVYSRAQLIDK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G+    ++E  V+ H+ +LRK+L      D +++ R +GY 
Sbjct: 184 VWGVG-ADIDERTVDVHMLRLRKQLAGTAAADFIETVRGVGYR 225


>gi|171740938|gb|ACB54965.1| PhoP [Pseudomonas fluorescens]
          Length = 225

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  ++   + E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLQTRLSDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLP--GISGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL R +R+  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  E   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGDEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL    GF P+D+ R LGY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEAPAGFKPIDTVRGLGYLFN 221


>gi|311696245|gb|ADP99118.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 230

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++                        L      D+  ++  L   G   +E
Sbjct: 7   LIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKHPDLVLLDWMLP--GTSGVE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++     + +P+I ++        +   + G DD + KP   RE++AR+ A+ RR 
Sbjct: 65  LARRLKKEESTADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 124

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++  E   + +   G     Q     +   E R+L++ M ++ +   ++Q+   +
Sbjct: 125 TPPGVDSPIEVEGLTLDPVGHRVTTQDGALTMGPTEYRLLQFFMTHQERVYTRSQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L ++     + + R  GY  
Sbjct: 185 WGG-NVYVEERTVDVHIRRLRKALGDQYDH-LIQTVRGTGYRF 225


>gi|304317403|ref|YP_003852548.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778905|gb|ADL69464.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 225

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G S++   +             DV  ++  L       +
Sbjct: 3   ILVVDDEPYLTDLLNKALKEEGYSVDIAQNGIDGMECAKMNVYDVIILDIMLPE--IDGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R  +   P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR +
Sbjct: 61  QILKNLRNMNINTPILMLTAKDALDDKVKGLDTGADDYMTKPFELSELTARIRALLRREQ 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S +   +   + V +   D    G++  L  +E  +LEY+M N G+ + ++QI   ++G
Sbjct: 121 PSKSPILKIADLEVNTLTHDVRRGGKIITLTSKEYSLLEYMMRNSGRVLTRSQIVDHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++     N+++ +I  LRKK+ +      + + R  GY +
Sbjct: 181 -YEFDGLSNIIDVYIRYLRKKIDDNFDIKLIQTIRGSGYCL 220


>gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 230

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++D       ++G ++  F +   E+ L+   +E++  +   ++  G   L
Sbjct: 5   ILVIDDEKEIRDLLEINLKNEGYNV--FKASNGEKALEILDKEEIHLMVLDIMMPGMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P++ +S        +    +G DD V KP +H E+  R+ A+ RR   
Sbjct: 63  EVCRRVREKYNIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  +N      + +        +      L  RE  IL  L +NRG+  +  +IF
Sbjct: 123 LNTKMQALDNIIRIESMIIDKSKHKVTIDDNEVSLTAREFEILYLLASNRGRVFSTEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++         N V  H+S+LR KL   + G   + +   +GY I+
Sbjct: 183 EKVWKER-YYQSNNTVMVHMSRLRDKLEQYMEGNKIIHTVWGVGYKIE 229


>gi|218291254|ref|ZP_03495238.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218238856|gb|EED06067.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 230

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +              + + D+  ++  L        
Sbjct: 5   ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALQRWRALQPDLILLDVMLPEV--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR  S VP+I ++        +   + G DD V KP   RE++ARV A  RR   
Sbjct: 63  DVLRAIRQASGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASD 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N R     + +          G+  PL  RE ++L  L A+ G+   + Q+  
Sbjct: 123 VLREHRENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRDQLVD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G  D   +   V+  I +LR+KL  +      V ++R +GY +
Sbjct: 183 QVWG-SDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGYYV 227


>gi|148655542|ref|YP_001275747.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567652|gb|ABQ89797.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 261

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 94/234 (40%), Gaps = 16/234 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D  L+ +        +  S+           L       +  ++  L       
Sbjct: 10  LIMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDD--GNG 67

Query: 61  LELPRIIRAHS---------QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            +L R+IR             VP++ +S     +  L+ F +G DD + KP    E+  R
Sbjct: 68  CDLCRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFR 127

Query: 112 VAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + +I RR   +S    E G +++    R+  V      L  +E  +L  L ++ G+  ++
Sbjct: 128 IKSILRRSIGLSIACIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSR 187

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF---DPVDSKRFLGYSID 221
            ++   ++G +        V+ H+++LR KL         + + ++   GY ++
Sbjct: 188 EELLERVWG-YSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLE 240


>gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
 gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
          Length = 240

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 8   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGI 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 66  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 126 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 186 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|108803229|ref|YP_643166.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764472|gb|ABG03354.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 234

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   V+D        +G+  E     E   E L  S   D+  ++  L   G   +
Sbjct: 5   LIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLP--GMDGI 62

Query: 62  ELPRIIRA----HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            + R +R     H  VP++ ++      + +   + G DD + KP   R++ +RV A  R
Sbjct: 63  SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122

Query: 118 RLK------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R +          + E   + +    R    +GE   L  RE  +L  L +N G+  ++ 
Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           QI   ++G  +   E    + HI  LR+K+  +      + + R +GY  
Sbjct: 183 QIMDHLWGG-EFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231


>gi|228958269|ref|ZP_04119997.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801428|gb|EEM48317.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 228

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGDVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEVS 227


>gi|258512880|ref|YP_003186314.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479606|gb|ACV59925.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 230

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 18/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   + +        +G  +    +G  +LE    LQ     D+  ++  L    
Sbjct: 5   ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALERWRALQ----PDLILLDVMLPEV- 59

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               ++ R IR  S VP+I ++        +   + G DD V KP   RE++ARV A  R
Sbjct: 60  -DGFDVLRAIRQASGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLR 118

Query: 118 RL------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R          N R     + +          G+  PL  RE ++L  L A+ G+   + 
Sbjct: 119 RASDVLREHKENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           Q+   ++G  D   +   V+  I +LR+KL  +      V ++R +GY +
Sbjct: 179 QLVDQVWG-SDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGYYV 227


>gi|196034428|ref|ZP_03101837.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196042110|ref|ZP_03109394.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218905762|ref|YP_002453596.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228917175|ref|ZP_04080732.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|301056045|ref|YP_003794256.1| response regulator [Bacillus anthracis CI]
 gi|195992970|gb|EDX56929.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196027046|gb|EDX65669.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218539918|gb|ACK92316.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228842376|gb|EEM87467.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|300378214|gb|ADK07118.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 230

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|332709119|ref|ZP_08429087.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332352125|gb|EGJ31697.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 248

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 106/229 (46%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLE-FEEWLQSSAREDVSAIEAFLIGKG 57
           ++++D  L+++  +    ++G  +    +G  +L   ++   +    D+  ++  L    
Sbjct: 22  LVVEDEELIREMIVLALQEEGYEVLTASDGATALTMLQDSDHTGYSVDLLILDLMLPQV- 80

Query: 58  EKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L+L R++R   + +P++ +S   S    +   + G DD + KP   RE++AR  A+ 
Sbjct: 81  -NGLDLCRLLRYRGNPIPIMILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCRALI 139

Query: 117 RRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           RR  ++        +   I+++       V+GE   L  +E R+LE  + N  +  ++ Q
Sbjct: 140 RRQHLNGITPTPVQQFREIKLYPQECRVTVRGEDVNLSPKEFRLLELFINNPRRVWSRDQ 199

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   ++G+ D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 200 LIDQVWGM-DFVGDTKTVDVHIRWLREKLEEDPSKPEYLITVRGFGYRF 247


>gi|313898465|ref|ZP_07832002.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956847|gb|EFR38478.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 229

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +  F   +       + R D++ ++  +        
Sbjct: 5   ILVLDDEKEIADLVALYLNNEGYEVHKFYDSKDALEYMKNNRVDLALLDVMMPE--ISGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR     P+I ++        +     G DD + KP +  E++ARV A  RR K 
Sbjct: 63  EICRIIREKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N      N  +   + + +D     +  EV  L   E  IL YL  NRG+ +   ++F 
Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNRGRVITSEELFE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           A++         N V  HI +LR+K+         + +   +GY I+
Sbjct: 183 AVWKKK-YFDSNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIE 228


>gi|303241663|ref|ZP_07328161.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590778|gb|EFL60528.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G      N  E         + D+  ++  L        
Sbjct: 5   ILIVDDEKNIVDILKFNLVKEGFQTIEANDGEQAIECALKEKPDLILLDIMLPKV--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R     P+I I+        +   + G DD + KP   RE++ARV A  RR+  
Sbjct: 63  TVCRKLRQTISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVSS 122

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N      N  + G + +  D  + +   +V  L  RE  ++++L   +G+  ++  +  
Sbjct: 123 ENTVSKECNAIKCGDLEIDIDRYEVKRDNKVLELTLREFELVKFLALQQGQIFSRESLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G ++   +   V+  + +LR+K+  +      + +KR +GY  +
Sbjct: 183 KVWG-YEYYGDVRTVDVTVRRLREKVENDPSNPSYIMTKRGVGYYFN 228


>gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 237

 Score =  239 bits (610), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G  +  + ++   E      +     I   L+   +   
Sbjct: 5   ILIVEDEENIREVCKRYLEREGYEV--YTAMNGMEGWDVFHQYQPDLIILDLMMPKKDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL   IR  S VP+I ++     +  +     G DD V KP   RE++ RV  I RR   
Sbjct: 63  ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  +   E   ++++   R   V      L  +E  +L  +  +  +  +++Q+
Sbjct: 123 IPIQAKESLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAQHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
              I+  F+     N V   +S+LR KL      +  + +   +GY  + N
Sbjct: 183 LELIWD-FEHEGGTNTVTVLVSRLRDKLEKHTIKNRWIHTVWGIGYRFEPN 232


>gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 242

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +G  + G    + +  ++   +     I   L+       
Sbjct: 8   ILLVEDEKAIRDAVAAYLEREGYWVVG--VGDGQSAVEEFEKHQFDLIVLDLMLPKLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++RR  +
Sbjct: 66  RVCRAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALFRRTHL 125

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       + G + +   G    V+G    L   E ++L  L  + G+   + ++   +
Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGNEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL  +      + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFE 229


>gi|302874727|ref|YP_003843360.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690659|ref|ZP_07633105.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577584|gb|ADL51596.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 234

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +   +   +       +    +  +  ++  L   G   +
Sbjct: 6   ILIVDDEEHIVELIKYNLEAEEYKVLTAHDGIEAGKIAKKEKPSLILLDLMLP--GISGM 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR     S++P+I ++        +   + G DD + KP   RE+LARV A+ RR
Sbjct: 64  EVCKKIRRDDEISEIPIIMLTAKSDELDKILGLELGADDYITKPFSIRELLARVKAVLRR 123

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +  +  G + +     +         L  +E  +L  L+ NRGK + +  +   
Sbjct: 124 TNTVAVSTNSRFGELTIDFSKYEVRKNDIKVDLTLKEFELLNILVKNRGKVLTRDVLLDK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           I+G ++   E   V+ HI  LRKK+ +       +++ R +GY   ++
Sbjct: 184 IWG-YEYIGETRTVDVHIRHLRKKIEDDDSSPKYIETIRGIGYRFSYD 230


>gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
 gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
          Length = 240

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G   E          L      D   ++  L       +E
Sbjct: 6   LLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQ--LDGIE 63

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA  S+ P++ +S        +   + G DD V KP   RE+LARV AI RR + 
Sbjct: 64  VCKRLRAKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 123

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             +R++ +  +     E+ PL  +E  +L YLM +    + + +
Sbjct: 124 EISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 LLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 231


>gi|253682540|ref|ZP_04863337.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562252|gb|EES91704.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 223

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 106/226 (46%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++      F  +G  +  F   +  + L+     ++  +   ++       
Sbjct: 3   ILIIEDEHRMRKLLKDYFKKEGFCV--FEGEDGIKGLEVFKNNNIDIVILDIMIPYLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR  S+VP+I ++     +  L  ++ G DD V KP   + ++A+V A+ +R   
Sbjct: 61  KVCKSIRDLSKVPIIMLTAKGEEEDKLFGYELGADDYVTKPFSPKVLVAKVKALLKRSVI 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   N      +++     + ++ G+V  L  +E  +L + + N+   +++ ++   +
Sbjct: 121 DIKEEKNIINYNGLQINEPSNEVKINGKVITLSPKEYDLLLFFVKNKDIVLSRDKLLDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD       V++H+ +LR+KL++K   + + + R  GY  + N
Sbjct: 181 WG-FDYDGGLRTVDTHVKRLREKLKDK--SNYIVTVRGKGYKFEVN 223


>gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 228

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 107/222 (48%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +          +G   E  ++           + D+  ++  L   G   +E
Sbjct: 8   LIVEDEARIARFLQMELEHEGFEAETESNGTRAYERIIQEKFDIVLLDVMLP--GMDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   +++  ++  D G DD + KP    E++AR+    RR  ++
Sbjct: 66  ICRRVREISNVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLNNALRRRDLA 125

Query: 123 ----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++R     + +F    + +V GE+  L +RE  +LEYL+ N+   + + QI   ++
Sbjct: 126 EGDPSDRLTVKNLVMFLSRYEVQVDGEIVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   E NVV+ +I  LR KL ++     + + R +GY +
Sbjct: 186 G-FDYTGETNVVDVYIRYLRAKLDDRFHQKYIYTVRGVGYVV 226


>gi|238855833|ref|ZP_04646122.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus jensenii 269-3]
 gi|282933323|ref|ZP_06338706.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|313472807|ref|ZP_07813295.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
 gi|238831496|gb|EEQ23844.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus jensenii 269-3]
 gi|281302508|gb|EFA94727.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|313448883|gb|EFR61222.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
          Length = 237

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++   + + EE ++     D   +   L+   +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFEVD--TAYDGEEAVKKVNEIDPDLMILDLMLPKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE+LARV A  RR   
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELLARVKANLRRRDI 122

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +  N     G + +  D    E  G+   L  RE  +L YL ++ G+ + + 
Sbjct: 123 VQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +    +G +D   +   V+  + +LR+K+ +  +    + ++R +GY +
Sbjct: 183 HLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYV 231


>gi|238927716|ref|ZP_04659476.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|238884432|gb|EEQ48070.1| response regulator [Selenomonas flueggei ATCC 43531]
          Length = 228

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G + E   +             D+  ++  L   G   +E
Sbjct: 8   LIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLP--GMDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++   +++  ++  D G DD + KP    E++ARV    RR  +S
Sbjct: 66  ICRRVRTVSNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARVRNALRRRDIS 125

Query: 123 ----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++R     + +F    + +V GE   L +RE  +LEYL+ N+   + + QI   ++
Sbjct: 126 TDDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   E NVV+ +I  LR KL ++     + + R +GY +
Sbjct: 186 G-FDYTGETNVVDVYIRYLRAKLDDRFHKKYIYTVRGVGYVV 226


>gi|237735491|ref|ZP_04565972.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|229381236|gb|EEO31327.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 220

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G   +   + + E  L+ +  ++   I   L+      +
Sbjct: 6   ILIIEDEKNMSDLLKLELTHAGYCCD--QAYDGEVGLKKALEQEYELILLDLMLPRINGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   Q P+I ++    +   ++    G DD + KP    E+LAR+ A+ RR+  
Sbjct: 64  EVCRRLREIKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRMNF 123

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                E   G +++         +     L   E  +L  L+ N G  V++ +I   ++G
Sbjct: 124 QKALLEYSYGEVKIDPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKILDQVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  NVVE +I  LR K+        +++ R +GY +
Sbjct: 184 -YDEDVSTNVVEVYIRYLRNKIPGI----KIETVRGVGYRL 219


>gi|65319271|ref|ZP_00392230.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 234

 Score =  238 bits (609), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 103/223 (46%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ   +  V  +   ++       
Sbjct: 14  ILIVDDDPHIRELVSVFLECEGF--QTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 132 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 233


>gi|289434787|ref|YP_003464659.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171031|emb|CBH27573.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 228

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +   ++     + ++  ++  +ED       L+      +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKE--EIDATFVHDGKKGYETFLKEDFDIAIIDLMLPNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S +P+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               +   +  ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATPAEADEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+        + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDT-KPFLHTIWGVGYKFD 225


>gi|229009103|ref|ZP_04166437.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228752157|gb|EEM01850.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
          Length = 237

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++        +G  +    + E    L    + D+  ++  +  K     
Sbjct: 5   IAIIEDEDNIREICKRYLESEGYEVYTAENGEEGWNLFQQYQPDLIVLDLMMPKK--DGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR HS VP+I ++     +  +     G DD V KP   RE++ RV  + RR   
Sbjct: 63  ELCEEIRQHSNVPIIILTARAEERDRILGLTIGADDYVTKPFSPRELVLRVQILLRRGNQ 122

Query: 122 S--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +        +       + +    R   V G    L  +E  +L  +  +  +  +++Q+
Sbjct: 123 ATIQMQEPVSEIIRFHDLDIHPAKRRVFVCGHEIELTVKEFEVLHIMAKHPRQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
              I+  F+     N V   +S+LR+KL      +  + +   +GY  D
Sbjct: 183 LEQIWD-FEYEGCTNTVTVLVSRLREKLEKHTTKNRWIHTVWGIGYRFD 230


>gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 100/231 (43%), Gaps = 17/231 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D + +          +G  +    + +    L +    D+  ++  L       LE
Sbjct: 5   LLVEDESTLLTTIAYNLRREGYKVLTAENGKRALEL-AEENPDIVVLDILLPE--IDGLE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  S VP+I ++        +   + G DD + KP   RE+LAR+ A+ RR    
Sbjct: 62  VCRRLRQRSSVPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALLRRRSLI 121

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +    +  +G + +       +  G+V  L  RE  +L +L+ N+G   + 
Sbjct: 122 MAEISSQQQESRRQKLVSGDLEIDPAMHQVKRGGKVIQLTPREFDLLTFLVMNKGIVFSA 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++   ++G +DEA++   V  HI  LR+K+ +       +++ R +GY  
Sbjct: 182 ERLLEEVWG-YDEALDVRTVPVHIRNLREKIEDDPSDPKRIETVRGVGYRF 231


>gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 232

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 99/229 (43%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G  +   N+      L       +  ++  +   G    
Sbjct: 6   ILVVDDEDHIVELISYNLINSGYKVITANNGIDAVKLAKEENPRLMLLDLMIP--GLDGY 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + IR+      + +I ++        +   + G DD + KP   RE+LAR+ A+ RR
Sbjct: 64  DVCKAIRSDNDTKDISVIMLTAKGEELDKILGLELGADDYMTKPFSIRELLARIKAVLRR 123

Query: 119 LK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            K    S    +T  I +  + R+  +  +   L  +E  +LE L+ NRGK + +  +  
Sbjct: 124 TKSLGGSEEIFKTNGILINFERREVLISDKKIDLTLKEFELLEILVKNRGKILTRETLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  + N
Sbjct: 184 KIWG-YEYVGETRTVDVHIRYLRKKIEVDDKNPKFIETIRGVGYRFNPN 231


>gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
 gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
          Length = 239

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +G  + G    + +  ++   +     I   L+       
Sbjct: 8   ILLVEDEKAIRDAVAAYLEREGYWVVG--VGDGQSAVEEFEKHQFDLIVLDLMLPKLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++RR  +
Sbjct: 66  RVCRAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRTHL 125

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       + G + +   G    V+G+   L   E ++L  L  + G+   + ++   +
Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL  +      + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFE 229


>gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae OXC141]
          Length = 235

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G S +   +      L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHILRLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQ--LDGIE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA   + P++ +S        +   + G DD + KP   RE+LARV A+ RR K 
Sbjct: 64  VCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +           G ++V+ +  +     ++  L  +E  +L YLM +    + + 
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232


>gi|295109722|emb|CBL23675.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 227

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 106/225 (47%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD + ++             +    + + EE +     E D++ +   ++      
Sbjct: 6   ILVVDDESRMRKLVKDFLEKKNFHV--LEAGDGEEAMDIFYEEKDIALLILDVMMPKMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR +S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR  
Sbjct: 64  WEVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTG 123

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N+    G I +        V G    L  +E  +L Y + N+G  +++ +I ++++
Sbjct: 124 QDAGNDVLSAGGIVIDKSAHQATVDGRQMELSFKEFELLTYFLENQGIALSREKILNSVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +D   +   +++H+ KLR K+ +K   + + +   +GY  + +
Sbjct: 184 N-YDYFGDARTIDTHVKKLRSKMGDKG--EYIKTVWGMGYKFEVD 225


>gi|33312479|gb|AAQ04067.1|AF432143_2 two-component response regulator [Paenibacillus popilliae]
 gi|40363826|gb|AAR84672.1| two-component response regulator [Paenibacillus popilliae]
          Length = 231

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +      + +E +     + +  +   ++       
Sbjct: 6   ILIADDDAEIADLVAIHLEKEGYRV--IKVSDGQETIDVIQNQPIDLLILDIMMPKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRRIREKHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFIPIELVARVNAQLRRFMK 123

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E G + +  + R   + G+   L  +E  IL  L +N  K      IF
Sbjct: 124 LNQPKTKQNSNLEFGGLTISPEQRTVTLYGKNIELTPKEFEILFLLASNPNKVYRAEDIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++G        N V  HI  LRKKL  +K     + +   +GY  +
Sbjct: 184 QKVWGDAYYEGG-NTVMVHIRTLRKKLEEDKRKNKLIQTVWGVGYKFN 230


>gi|167757440|ref|ZP_02429567.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
 gi|167703615|gb|EDS18194.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
          Length = 219

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G   +   + + E  L+ +  ++   I   L+      +
Sbjct: 5   ILIIEDEKNMSDLLKLELTHAGYCCD--QAYDGEVGLKKALEQEYELILLDLMLPRINGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   Q P+I ++    +   ++    G DD + KP    E+LAR+ A+ RR+  
Sbjct: 63  EVCRRLREIKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRMNF 122

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                E   G +++         +     L   E  +L  L+ N G  V++ +I   ++G
Sbjct: 123 QKALLEYSYGEVKIDPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKILDQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  NVVE +I  LR K+        +++ R +GY +
Sbjct: 183 -YDEDVSTNVVEVYIRYLRNKIPGI----KIETVRGVGYRL 218


>gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 227

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 106/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++   +++  + L+ +  E+   I   ++      +
Sbjct: 6   ILIVEDEVKIARFVELELQHEGYIVD--KAVDGRDGLEKALNENFDLIILDVMLPSLNGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +S+VP+I ++    +   +   D G DD + KP    E+LAR+   ++  +V
Sbjct: 64  EVLRRLRQNSEVPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIRVTFKHKRV 123

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + ++    E G +++           EV  L + E  +L+YLM N+   +++  I   ++
Sbjct: 124 TPDKSGIIEIGKLKLNVSKYLTTYDDEVVELTKTEFDLLKYLMVNKNIVLSRENILEKVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   + NVV+ +I  LR K+ ++     + + R +GY +
Sbjct: 184 G-YDYTGDTNVVDVYIRYLRSKIDDRFNHKFIYTVRGVGYQL 224


>gi|224500673|ref|ZP_03669022.1| hypothetical protein LmonF1_13771 [Listeria monocytogenes Finland
           1988]
          Length = 228

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +   ++     + +   ++  ++D       L+      +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKE--EIDATFVHDGKMGYEAFFKDDYDIAIIDLMLPNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               + + +  ET   ++    R+   Q E+   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMKHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATET-KPFLHTVWGVGYKFD 225


>gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 225

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  ++  G       +G  ++   + + EE L+     +   +   L+      L
Sbjct: 4   ILIIDDEEMLVKGLKLSLIQEGYYVDC--AYDGEEGLEKIKNGNYDLVILDLMLPKIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R+ S +P+I ++        +   + G DD + KP + RE++AR+ A++RR   
Sbjct: 62  TLCKEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTT 121

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++  + G I +    +  +  G+   L  +E  +L  L +N GK  +K ++   I
Sbjct: 122 PYVKKHDVIKLGDITINVPDKIVQKNGKDIDLTNKEFELLVLLASNPGKLYSKDKLMDLI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G FD   + N V  HI KLR+K+ +       + +K   GY +
Sbjct: 182 WG-FDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYM 224


>gi|284992664|ref|YP_003411218.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065909|gb|ADB76847.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 238

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 85/219 (38%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +    +   +G      +            R D+  ++  L   G   L+
Sbjct: 19  LVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLP--GRNGLQ 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   ++G DD V KP    E++ARV A  RR +  
Sbjct: 77  ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETG 136

Query: 123 NNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G +++          G    L   E  +L  L     +   +  +   ++G +
Sbjct: 137 QAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWG-Y 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 196 RHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234


>gi|319793165|ref|YP_004154805.1| two component transcriptional regulator phob, winged helix family
           [Variovorax paradoxus EPS]
 gi|315595628|gb|ADU36694.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus EPS]
          Length = 230

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G            +    +   D+  ++  L   G+  L+
Sbjct: 7   LIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDAFLPDLILLDWMLP--GQSGLQ 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  R       +P++ ++        +   D+G DD + KP   +E+LAR+ A+ RR 
Sbjct: 65  LARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRAVLRRR 124

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V   R E G + + +       QG    +   E ++L YLM +  +  ++ Q+   +
Sbjct: 125 APEVVTERVEIGELALDTSTHRVTWQGGALKVGPTEFKLLAYLMQHAERVHSRAQLLDKV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 185 WGDH-VYIEERTVDVHVKRLRESLGAA--APMVETVRGAGYRL 224


>gi|15674628|ref|NP_268802.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19745650|ref|NP_606786.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21909908|ref|NP_664176.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28896393|ref|NP_802743.1| two-component response regulator [Streptococcus pyogenes SSI-1]
 gi|50913815|ref|YP_059787.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|56808928|ref|ZP_00366636.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71903089|ref|YP_279892.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910248|ref|YP_281798.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94988065|ref|YP_596166.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94989945|ref|YP_598045.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94991951|ref|YP_600050.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94993851|ref|YP_601949.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|139474240|ref|YP_001128956.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209558999|ref|YP_002285471.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|306827822|ref|ZP_07461092.1| response regulator [Streptococcus pyogenes ATCC 10782]
 gi|13621741|gb|AAK33523.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19747781|gb|AAL97285.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21904096|gb|AAM78979.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28811644|dbj|BAC64576.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 gi|50902889|gb|AAT86604.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|71802184|gb|AAX71537.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71853030|gb|AAZ51053.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94541573|gb|ABF31622.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94543453|gb|ABF33501.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94545459|gb|ABF35506.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94547359|gb|ABF37405.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|134272487|emb|CAM30750.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209540200|gb|ACI60776.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|304429992|gb|EFM33031.1| response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 236

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPE--LDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLEIVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|229015664|ref|ZP_04172650.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229021856|ref|ZP_04178428.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739444|gb|EEL89868.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745636|gb|EEL95652.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 233

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKVEENPRKPIYIKTVWGVGYKIEKD 232


>gi|227810120|ref|ZP_03989033.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226904700|gb|EEH90618.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 232

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 89/226 (39%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD A +++     F  +G  +              + + D+  ++  +        E
Sbjct: 8   LIADDEAQIREILSLYFKKEGFKVIEAADGAEALVQIQAGKPDIILLDIMMPV--LDGFE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + +R  S VP+I ++        +   + G DD + KP + RE++ARV A+ RR    
Sbjct: 66  VCKQVRKISDVPIIMLTAKDFDDDRILGLEMGADDYIAKPFNTREVVARVKAVLRRSSQF 125

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    E   + +          G       +E  +L  L +N G   ++ Q+   I
Sbjct: 126 LQSQNKQVLEYPDLMINLSEYRVVAFGREVIFTAKEMELLWCLASNPGIVFSRNQLLEKI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +G +    +   V++HI ++R KL         + +   +GY  + 
Sbjct: 186 WG-YTYYGDTRTVDTHIKRVRHKLDIPKDAKWDIVTVWGVGYKFEV 230


>gi|206977475|ref|ZP_03238370.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959463|ref|YP_002338015.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229138688|ref|ZP_04267270.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|206744325|gb|EDZ55737.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217066890|gb|ACJ81140.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228644807|gb|EEL01057.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 225

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 224


>gi|108763038|ref|YP_633464.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108466918|gb|ABF92103.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 226

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   + +      G +G+S+              ++  D   ++  +   G   LE
Sbjct: 6   LLIDDDTRMYELLEQYLGQNGLSVTHAADGGRGLAALEASAFDAVLLDVMMP--GMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA S++P+I ++        +   + G DD + KP   RE+LAR+ A+ RR + S
Sbjct: 64  VCKRIRAKSRIPVIMLTAKGDETDRVVGLELGADDYLPKPFSPRELLARLRAVLRRSQPS 123

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +R E+G + +   GR+  V+     L   E  +L  L+   G+ V +  +     G 
Sbjct: 124 AVADRLESGGVSIDVAGREVRVEERAVELTGLEFDLLVALVRRAGRVVPRDALLGEA-GR 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V E  V+ HIS LR+KL + +G   + + R +GY  
Sbjct: 183 SDTVVGERTVDVHISHLRQKLGD-VGTRLIKTVRGVGYVF 221


>gi|228945599|ref|ZP_04107949.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228814117|gb|EEM60388.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 234

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 132 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 233


>gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 219

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 92/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +   ++  N  +       +   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFLELELTHENYKVDIENDGQSGLDKALTKTYDLIILDIMLPH--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+ AR+ AI RR + 
Sbjct: 62  EICRRIRQQYTTPIIIITAKSETMDKVTGLDYGADDYIVKPFEIEELFARIRAILRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  +  +  V G    L + E  +L  L  NR   + + QI   ++G +
Sbjct: 121 QKDVIDINGIIIDKNAFEVTVDGTQLDLTKTEYDLLYVLAENRNHVLQREQILDHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 DSEVETNVVDVYIRYLRNKLKPFNKERTIETVRGVGYVI 218


>gi|218440527|ref|YP_002378856.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173255|gb|ACK71988.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 250

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 108/232 (46%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSARE---DVSAIEAFLI 54
            ++++D  +++D  +    ++G  L    +G  +LE  +   S+  E   D+  ++  L 
Sbjct: 21  ILVVEDEDVIRDMVVLALEEEGYELQSAADGRTALELLQGSDSTESEESFDLLVLDLMLP 80

Query: 55  GKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++R   + +P++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  QV--NGLDICRLLRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR       SN   +   I +++      V+G+   L  +E R+LE  M+   +  +
Sbjct: 139 ALLRRQSFSTISSNPVRKFKDISLYTQECRVLVRGDEINLSPKEFRLLELFMSYPRRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + Q+   I+G  D   +   V+ HI  LR+KL R+    + + + R  GY  
Sbjct: 199 REQLIEQIWGP-DFLGDTKTVDVHIRWLREKLERDPSQPEYLITVRGFGYRF 249


>gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 229

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E  ++ +           D+  ++  +       L
Sbjct: 5   ILIVEDEQKISRVLQLELEYEGYESEVASNGKDALNKIEQENWDLVLLDIMIPQ--LSGL 62

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R   RA +Q P+I ++    +   +   D G +D + KP    E+LARV    R++ 
Sbjct: 63  EVLRRVRRAENQTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHLRKVV 122

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   N       ++V     +    GE   L  RE  +L  L+ N+   + + Q+  ++
Sbjct: 123 QAANDNQTLSVADLQVDLHAYEVTRNGEKIELTPREFNLLVCLLKNKNIVLTREQLIESV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + NVV+ +I  LR+K+        + + R +GY+I  +
Sbjct: 183 WG-YDYFGDTNVVDVYIRYLRQKVDKNFEIPIIQTVRGVGYTIKED 227


>gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 239

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + + EE L+ +   +       ++  G    
Sbjct: 6   ILVVDDEPSIVELLTFNLKKEGYEV--LKAYDAEEALKIAEDNETDMFIVDIMLPGMDGF 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA     Q P+I +S        +   + G DD + KP   RE+LAR+ A++RR
Sbjct: 64  ELVRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAVFRR 123

Query: 119 LKVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++ S    E          + + ++  +  V+  +  L   E  +L +L  N GK  ++ 
Sbjct: 124 IQQSAQAKEERPKKILARDLEIDTEKYEVRVRNRMVNLTPLEFELLRFLAENEGKVFSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+         + + R  GY  
Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDASTPKYIITVRGKGYKF 232


>gi|239627744|ref|ZP_04670775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517890|gb|EEQ57756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 229

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  N  +  E L  + +ED   +   L+  G    
Sbjct: 4   ILIVEDEESIAELEKDYLELSGFEVEIEN--DGTEGLDKALKEDYDLLILDLMLPGTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKKVREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + SN   E   +++    R   + GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGQPSNEIIEIRGLKIDKTARRVWINGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|323706070|ref|ZP_08117639.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534514|gb|EGB24296.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 228

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G S+    S             D+  ++  L   G    
Sbjct: 5   ILIIEDEKRIARFLQIELEREGYSVTLEYSGNSGLREALDGNYDLIILDLMLP--GLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S  P+I +S    ++  +   D G DD + KP    E++AR+  + R+   
Sbjct: 63  SVLRELRKKSSTPVIILSAKDEVKDKVFGLDIGADDYLTKPFSIEELMARIRNVLRKNAK 122

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           SN N+     I +     + +  G    L ++E  +L+YL+ N    + +  I   ++G 
Sbjct: 123 SNANKLVYDGITMDLSTYEVKRDGIKIELTKKEFELLKYLIINSEIVLTRENILENVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   E N+V+ +I  LR K+        + + R +GYS+
Sbjct: 182 YNYIGETNIVDVYIRYLRSKIDEPFDNKLIQTIRGVGYSL 221


>gi|223043280|ref|ZP_03613327.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
 gi|222443491|gb|EEE49589.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
          Length = 241

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   +  +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPE--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 63  EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +N+           E   + + +D        E   L  +E  +L YL     K   + Q
Sbjct: 123 ANSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEV 233


>gi|183601907|ref|ZP_02963276.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682821|ref|YP_002469204.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190397|ref|YP_002967791.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195803|ref|YP_002969358.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218792|gb|EDT89434.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620471|gb|ACL28628.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248789|gb|ACS45729.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250357|gb|ACS47296.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793384|gb|ADG32919.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 235

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +     +G    G  + E    L      D+  ++  L   G    
Sbjct: 4   ILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLMLP--GISGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            L R +    +VP+I ++   +    +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  TLCRRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLE 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++     GPI +     +  + GE+   P +E  +LEYLM N+G+ + + Q
Sbjct: 122 PRASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G  D   +   ++ H+ ++R K+  +      + + R LGY I
Sbjct: 182 LIGRVWG-SDYVGDTKTLDVHVKRIRAKIEADPSNPALLTTVRGLGYRI 229


>gi|209544301|ref|YP_002276530.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531978|gb|ACI51915.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 226

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V++       + G  +E  ++ +   +L  S   D+  ++  L G G   L
Sbjct: 3   ILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPG-GIDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   IRA +   P++ +S    +   +    +G DD V KP    E+LARV A+ RR +
Sbjct: 62  RLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRGR 121

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N    R     + +    R     G+   L  RE R+LEYLM + G+ V +T +   +
Sbjct: 122 SDNAPLTRLNVADLEIDLLSRSVRRGGQRIDLQPREFRLLEYLMRHAGQVVTRTMLLEGV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H+S+LR+K+        + + R  GY +
Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFDTPLIHTIRNAGYML 223


>gi|73662382|ref|YP_301163.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72494897|dbj|BAE18218.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 236

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 102/230 (44%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E     E      ++   ++  ++  L  K    +E
Sbjct: 6   LVVDDEQSIVTLLKYNLEQAGYIVEVAYDGEEALEKVNATNPELIVLDVMLPKK--DGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR  +
Sbjct: 64  VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSAI 123

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N              G IR+  +  +   + E+  L  +E  +L YL+  +G+ + +  
Sbjct: 124 VNEAVPVENDEDDILIGSIRIRPEYFEVYREDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 184 MLNSVWN-YEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 222

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++         +G  +      E    +  S   D+  I   ++       
Sbjct: 5   ILVVDDESRIRKIIRDFLVREGYVVCEAEDGEAALDIFCS-NNDIDLIIMDVMMPKMDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +R  S+VP++ ++     Q  L  F+ GVD+ ++KP   + + ARV A+ RR   
Sbjct: 64  QLCKEVRKLSKVPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNALLRRTTG 123

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N    +   I V        + G+   L  +E  +L Y M NRG  +++ +I + ++  
Sbjct: 124 DNEEILDIAGITVNKIAHTVTIDGKEIDLSFKEFELLTYFMENRGVALSREKILNNVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +   +++H+ KLR K+  K     + +   +GY  +
Sbjct: 183 YDYYGDARTIDTHVKKLRSKMGEKG--KFISTIWGMGYKFE 221


>gi|228995632|ref|ZP_04155297.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003260|ref|ZP_04161093.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757994|gb|EEM07206.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228764128|gb|EEM13010.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 233

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G  +    + +  E L    + +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRDLITIYLKNEGYKV--LQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   IR   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKIREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + N  E G +++        V+ E   L  RE  ILE L  N     +  QI+
Sbjct: 124 MNGFIVQNENEIEIGNMKINVSTHKVVVENEEVKLTPREFSILELLARNPEMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K          + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKIREKTEENPRKPIYIKTVWGVGYKIEKD 232


>gi|90418941|ref|ZP_01226852.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337021|gb|EAS50726.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 247

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+++D   +          +G  ++  +  +  +        D+  ++  L   G   +
Sbjct: 5   IVVVEDEEALGILLRYNLEAEGYVVDVIDRGDEADIRLKEEVPDLLILDWMLP--GLSGV 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P++ ++        +     G DD V KP    E++ARV A+ RR
Sbjct: 63  ELCRRLRQREETERLPILMLTARGEESERVRGLSVGADDYVVKPFSTPELIARVRAMLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K    +++   G I +  +       G    L   E +++E+ M + G+  ++ Q+   
Sbjct: 123 SKPEKISSQLVAGDIDLDRETHRVRRAGRELKLGPTEFKLMEFFMQSPGRVFSREQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V+E  V+ H+ +LRK +      DP+ + R  GY++D
Sbjct: 183 VWGR-DIYVDERTVDVHVGRLRKAINRGRERDPIRTVRGAGYALD 226


>gi|161506705|ref|YP_001576655.1| putative response regulator [Lactobacillus helveticus DPC 4571]
 gi|160347694|gb|ABX26368.1| putative response regulator [Lactobacillus helveticus DPC 4571]
          Length = 238

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 99/231 (42%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L  K    L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      ++   + G + +  D    E  G+   L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGQKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  + +LR+K+ +  +    + ++R +GY +
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYV 232


>gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB
           family [Candidatus Kuenenia stuttgartiensis]
          Length = 224

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++  ++      L +    D+  ++  L   G    
Sbjct: 3   ILIIEDEKKIAKYLKQGLEENSYTVDIAHNGIDGLHLATHENYDLIVVDIMLP--GINGK 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119
           E+ + IR      P I ++   S+   ++  D G DD + KP    E+LAR+ A + RR 
Sbjct: 61  EVLKQIRNTGIHTPAIFLTAIDSVNDKVNGLDIGADDYIVKPFSFSELLARIRACMRRRT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  +TG + +    R      +   L   E  ILEY M N G+ + +T I   I+ 
Sbjct: 121 DNYVSNLKTGNVTLDPKTRKVFRDKQKIELTPIEFSILEYFMRNPGQILTRTMISEHIWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++     NV++ HIS+LR KL        + + R +GY ++
Sbjct: 181 -YNYESFSNVIDVHISRLRNKLEKDFDKGIIHTVRRVGYVLE 221


>gi|149909265|ref|ZP_01897921.1| Response regulator [Moritella sp. PE36]
 gi|149807582|gb|EDM67530.1| Response regulator [Moritella sp. PE36]
          Length = 228

 Score =  238 bits (609), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +    + ++ E +        + I    +  G   +
Sbjct: 5   ILVVEDELAIREMLCFALEQKGFDV--VEAGDYNEAVDRLVEPYPNLILLDWMLPGGSGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + +++    S +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  KYIKHLKSQPHLSAIPVVMLTARGEEEDKVKGLEVGADDYITKPFSPKELIARLNAVMRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     +   +   +++            V  +   E ++L + M +  +  ++ Q+   
Sbjct: 123 VAPMTQDTVIDIHGLQLDPVAHRVSANDTVIDIGPTEFKLLHFFMTHPERVYSREQLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G+ +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGM-NVYVEDRTVDVHIRRLRKALTPSEHDKYVQTVRGAGYRF 225


>gi|289579453|ref|YP_003478080.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289529166|gb|ADD03518.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G     + + + EE L+ +  ++   I   ++       
Sbjct: 5   ILIVDDEKPIVEIIKYNLEKEGYI--TYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ ++        +   + G DD + KP   RE++ARV A  RR+ +
Sbjct: 63  SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S N      +++       E   +   L  RE  +L++L+ N+G   ++  +   +
Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKNNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 183 WG-YEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYF 225


>gi|167031376|ref|YP_001666607.1| DNA-binding response regulator CreB [Pseudomonas putida GB-1]
 gi|166857864|gb|ABY96271.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 226

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     DG S E           Q     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALQADGHSTEWVTLGSAALDQQRQRPADLIILDIGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R +R  ++VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               A    + ++ +       + +   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 122 RAEPATVAALFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLLDAL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             +   E  ++SHI  LR KLR    G +P+ + R LGYS
Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRQVASGGEPIQTHRGLGYS 220


>gi|317496245|ref|ZP_07954605.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316913820|gb|EFV35306.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 233

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   N  E    L  S   D+  ++  L  K    +
Sbjct: 6   ILVVDDEEPIAKILDFNLKKEGYDVIIANDGERAVELAFSENPDLILLDLMLPKK--DGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I ++   S    +   + G DD V KP   RE++ARV    RR+  
Sbjct: 64  EVCREVRAKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVLK 123

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                E           I ++ D    +  G+   L RRE  +  YL  + G+ + +  +
Sbjct: 124 QQEDVEEEKTSELAIKDIVIYPDAYVIKKNGKEIDLTRREFDLFYYLAQHPGQVLTRENL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
              ++G +D   +   V+  + +LR+K+  +    + + ++R +GY
Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGY 228


>gi|296111034|ref|YP_003621415.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832565|gb|ADG40446.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 237

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 99/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    + +  + D+  ++  L       +
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYEVITAADGQEALTIFNEEKPDLVLLDQMLPE--IDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
           E+ R IR+ S+ P+I ++   S    +   + G DD V KP  +RE++ARV A  R R  
Sbjct: 62  EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 121 VSNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           V+  +            E G + +          G+   L  RE  +L YL  +  + + 
Sbjct: 122 VAQAQNADDSVANTEDIELGDLTIHPQAYMVSKSGQDIELTHREFELLYYLAQHISQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 232


>gi|291551175|emb|CBL27437.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 230

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  E           D+  ++  L   G    
Sbjct: 5   ILIVEDEESIADLEKDYLELSGFEVEVANDGEIGLKKGLEGEFDLIILDLMLP--GVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR+    P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 63  EICRQIRSQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++    R   V GE      +E  +L +L  +     +K ++F
Sbjct: 123 LIGSNVEQNEVIEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYSKEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 183 REIWDM-ESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRF 228


>gi|225628688|ref|ZP_03786722.1| two component response regulator [Brucella ceti str. Cudo]
 gi|256158058|ref|ZP_05455976.1| DNA-binding response regulator [Brucella ceti M490/95/1]
 gi|256252987|ref|ZP_05458523.1| DNA-binding response regulator [Brucella ceti B1/94]
 gi|260167009|ref|ZP_05753820.1| two component response regulator [Brucella sp. F5/99]
 gi|261220080|ref|ZP_05934361.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261756397|ref|ZP_06000106.1| response regulator receiver [Brucella sp. F5/99]
 gi|265996572|ref|ZP_06109129.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|225616534|gb|EEH13582.1| two component response regulator [Brucella ceti str. Cudo]
 gi|260918664|gb|EEX85317.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261736381|gb|EEY24377.1| response regulator receiver [Brucella sp. F5/99]
 gi|262550869|gb|EEZ07030.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 225

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++          +G  ++  + L+       SAR D+  ++  L     + L
Sbjct: 3   IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHNYMESARYDLVLLDLMLPD--GQGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y 
Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E H+S+LRKKL    G   +++ R +GY +
Sbjct: 180 SFDTEVESNTMEVHVSRLRKKL----GHAIIETVRGIGYRL 216


>gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium
           urealyticum DSM 7109]
 gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium
           urealyticum DSM 7109]
          Length = 231

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+      E       S R D+  ++  +       L
Sbjct: 3   ILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSERPDMVILDVMMP--KLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   S+   +   D+G DD + KP    E+LAR  ++ RR  
Sbjct: 61  EVCRELRSQGEDTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLVRRAA 120

Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        +   + +    RD    G    L R E  +LE L+ N  K +++T I
Sbjct: 121 RPAAVDTQQIEILKFEDLELDPATRDVTRGGRQISLTRTEFALLELLLRNPRKVLSRTTI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D     N +E +I  LR+K         + + R +GY +
Sbjct: 181 LEDVWG-YDFPTSGNALEVYIGYLRRKTEADGEPRLIQTVRGVGYVL 226


>gi|83643472|ref|YP_431907.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631515|gb|ABC27482.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 226

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V         + G  ++  ++ +    + ++   D+  ++  L       L 
Sbjct: 4   LVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPE--LDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++RA  S+ P++ +S    +   +    +G DD + KP    E+LAR+ A+ RR + 
Sbjct: 62  VVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQQ 121

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +     +   + +    R  +  G    L  RE R+LEY M N G+ + +T +   ++
Sbjct: 122 QQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVL 222


>gi|291612802|ref|YP_003522959.1| PhoB family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291582914|gb|ADE10572.1| two component transcriptional regulator PhoB, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 230

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++         G        +       + A  D+  ++  L   G   +
Sbjct: 6   ILLVEDEPAIQELLAFNVAQCGFRAIQAYDVPSALVEINRALPDLILLDWMLP--GTSGV 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA      +P+I ++     +  +   +SG DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELARRLRADARTRDIPIIMLTARIDERDKILGLESGADDYITKPFSPRELMARIRAVLRR 123

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++S+       + +          G+   L   E R+L + M +  +  ++ Q+   
Sbjct: 124 RAPQMSDETVRVEGVELSPTTHRVSANGQNVDLGPTEFRLLHFFMTHVERVYSRAQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ HI +LR+ L        V + R  GY  
Sbjct: 184 VWGDH-VFVEERTVDVHIRRLRQALEPSGLDGLVQTVRGSGYRF 226


>gi|113867801|ref|YP_726290.1| response regulator [Ralstonia eutropha H16]
 gi|113526577|emb|CAJ92922.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 232

 Score =  238 bits (608), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A + +            ++  N          S   D+  ++  L   G   LE
Sbjct: 6   LVIEDDADIAELVRLQVSGLSCDVKVINHGRAGLEEALSRPYDLVILDLMLP--GADGLE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  +  P++ ++   +    +   + G DD + KP    E+ ARV AI+R +  
Sbjct: 64  ICRRLRAEPRYTPILMLTARSTELDRVLGLEMGADDYLTKPFSVLELTARVKAIFRLVDT 123

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N         +   + +  D R+  V+G    L  +E ++L Y  +N G+  ++ Q+ 
Sbjct: 124 LANPPSDGPRTVQVKALHIDIDKREVSVRGTPICLTAKEFQLLLYFASNPGRVFSRAQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G +  +  E+ V SHI++LR K+  +    + + +   +GY  
Sbjct: 184 DQVWG-YSHSGYEHTVSSHINRLRAKIELDPNEPEYIQTVWGVGYKF 229


>gi|310644837|ref|YP_003949596.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309249788|gb|ADO59355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa SC2]
          Length = 243

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 96/232 (41%), Gaps = 19/232 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+ +   +      + D+  ++  L   G   
Sbjct: 5   ILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVDIAVKQ-QPDLILLDLMLP--GMDG 61

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +R H  Q P+I ++        +   + G DD V KP   RE+LARV A  RR 
Sbjct: 62  MDVCREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQ 121

Query: 120 KVS------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           +                    G +   +D       G    L  RE  +L Y+  N GK 
Sbjct: 122 QRGVAGTPESRPQEDKQGLRVGDLFFDADMYTAYKNGTPLDLTHREYELLYYMAKNAGKV 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           + +  +  A++G F+   +   V+  I +LR+K+  N    + + ++R LGY
Sbjct: 182 MTREHLLQAVWG-FEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGY 232


>gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.]
          Length = 234

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +F +   ++E     E        A  D+  ++  +       L
Sbjct: 12  ILIVDDEHSLLKQLQQIFENQRYTVETATDGEEAFDKLFEAPFDLIILDIMMP--KIDGL 69

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + IR    + P++ ++    ++  +   D G DD + KP    E++ARV A++RR  
Sbjct: 70  AVLQEIRKSGIKTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRRSG 129

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  +   +++ +  RD    G+   L  RE  ILE+L+ N+ + V++  +   ++G
Sbjct: 130 GQTESVLQVFDLKLDTVTRDVTKDGKPVELTPREFSILEFLLYNKNRVVSRFSLAEHVWG 189

Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD     N ++ HI  LR K+ N      + + R +GY I
Sbjct: 190 DAFDPFSMSNFMDVHIKNLRHKIENFDNNRIIQTIRGVGYII 231


>gi|322372853|ref|ZP_08047389.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
 gi|321277895|gb|EFX54964.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
          Length = 236

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 99/233 (42%), Gaps = 18/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++    D+  ++  L       
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEA-ENPDLVILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR +
Sbjct: 61  LEVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTE 120

Query: 121 V------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                               G + +  D    + +G    L  RE  +L +L  + G+ +
Sbjct: 121 TIETAAAEESSNSGKKEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVM 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|229020106|ref|ZP_04176887.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
 gi|229026335|ref|ZP_04182694.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228735051|gb|EEL85687.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228741216|gb|EEL91433.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
          Length = 232

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAMHIIQTQPIELVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++ S +  E G I +  + R   V GE   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKIEESKSALEIGGIVIDPERRTVNVYGEPIELTPKEFDILYVLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|251800213|ref|YP_003014944.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547839|gb|ACT04858.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 255

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 98/243 (40%), Gaps = 27/243 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           L    + D+  ++  L  K    +
Sbjct: 5   ILVVDDEQPIADILKFNLEKEGHQVICAFDGGEAVRLAFEEQPDLILLDLMLPVK--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R    +P+I ++   +    +   + G DD V KP   RE+LARV A  RR + 
Sbjct: 63  DVCREVRTRLHMPIIMLTAKDTEIDKVLGLELGADDYVTKPFSTRELLARVKAHLRRQQK 122

Query: 122 SNNR-----------------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           ++                          +   + + +D       GE   L  RE  ++ 
Sbjct: 123 TSEAAASSLDNANAGDNGQGAADEKQGLKLFNLFIDTDMYVVYKDGEPLDLTHREYELVY 182

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLG 217
           Y+  N GK + +  +  A++G F+   +   V+  I +LR+K+ +     + + ++R LG
Sbjct: 183 YMARNSGKVMTREHLLQAVWG-FEYFGDVRTVDVTIRRLREKIEDDPSRPEYIMTRRGLG 241

Query: 218 YSI 220
           Y +
Sbjct: 242 YMM 244


>gi|332523446|ref|ZP_08399698.1| transcriptional regulatory protein WalR [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314710|gb|EGJ27695.1| transcriptional regulatory protein WalR [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 236

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L       L
Sbjct: 4   ILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAITIFEEDKPDLVILDLMLPE--MDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        N     G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|196036852|ref|ZP_03104240.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195990534|gb|EDX54514.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 233

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDDLEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|220929080|ref|YP_002505989.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999408|gb|ACL76009.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 230

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G +     + +  E +    +     +   ++   +   
Sbjct: 5   ILIADDNEGILDILKTYAAKEGFTP--LLAHDGIEAVDIFNKYSPLLLLLDVMMPKKDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +S VP+I I+        +   D G DD + KP    E++AR+ AI RR+ +
Sbjct: 63  EVCREIRQNSNVPIIMITAKAEEADRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVDI 122

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S+       +   + +     + +V G    L ++E  IL  L  N GK  ++  +  ++
Sbjct: 123 SDEDDKKIIQHPGLEINISDYEVKVNGSPVNLTKKEIEILWLLSNNPGKVFSRDNLLDSV 182

Query: 178 YGLFDEAVEENVVESHISKLRKK--LRNKLGFDPVDSKRFLGYSIDW 222
           +G ++   +   V++HI +LR K  + +   +D + +   +GY  + 
Sbjct: 183 WG-YEYFGDARTVDTHIKRLRAKTDITDTSAWD-IKTIWGVGYKFEV 227


>gi|134298626|ref|YP_001112122.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051326|gb|ABO49297.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 223

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 99/218 (45%), Gaps = 4/218 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          +G  +E  N       +      ++  ++  L   G    E
Sbjct: 6   LVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLP--GLDGWE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +  R  +  P++ +S    +++ +   + G DD + KP    E+LARV A+ RR   +
Sbjct: 64  ICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRRITA 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           N   +   +++  + R+    G +  L  RE  +L + M +  + + + QI   ++GL D
Sbjct: 124 NKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL-D 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                NV+E +I+ LR+K+ +  G   + + R +GY +
Sbjct: 183 FTGGSNVLEVYINMLRQKIED-YGSRIIHTVRGVGYVL 219


>gi|226312392|ref|YP_002772286.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095340|dbj|BAH43782.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS----LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +L++D   +         ++G S     +G + LE    ++     D+  ++  L    
Sbjct: 13  LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIE----YDLILLDVMLPE-- 66

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +EL R IR    VP+I I+    +   +   DSG +D + KP    E+ AR+  + R
Sbjct: 67  LSGIELCRRIRETKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLR 126

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R   +N     G +R+  + R   +  E   L  RE  +L Y++ N+ + V++ QI +A
Sbjct: 127 QRESKANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTA 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N+V+ +I  LR K+ +      + + R +GY++
Sbjct: 187 VWG-FDFMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTL 229


>gi|225387787|ref|ZP_03757551.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
           DSM 15981]
 gi|225046121|gb|EEG56367.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
           DSM 15981]
          Length = 229

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  N+         +   D+  ++  L   G    
Sbjct: 4   ILIVEDEESIAELEKDYLELSGFEVEIENNGSSGLERALNEEFDLFILDLMLP--GTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKKIREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + SN   E   +++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGQPSNEIVEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLSFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|302528568|ref|ZP_07280910.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437463|gb|EFL09279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 244

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 8/220 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + +        DG  +E     +  + L +  R    A+   +   G   
Sbjct: 26  LVLVVEDETAIAELAALYLRRDGFGVEV--EPDGAKALAAIRRLRPVAVVLDIGLSGMDG 83

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +RA     P++ ++        L   + G DD + KP   RE+ ARV  + RR 
Sbjct: 84  IEICRALRAAGDWTPVLFVTARDDELDRLLGLEIGADDYLTKPFSPRELAARVRTVLRRA 143

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             S       G +R+   GR          L   E  +L YL+ + G+ +++ Q+ SA++
Sbjct: 144 SGSPATTLACGGVRIDVPGRRAWAGEAEVALTSTEFDLLAYLLRHPGQVLSRDQLLSAVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G +  A     V+ H+++LR KL +     P+ + R +GY
Sbjct: 204 G-YAAAAGTRTVDVHVAQLRAKLGD---DSPIRTVRGIGY 239


>gi|330836364|ref|YP_004411005.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
 gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
          Length = 224

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 106/224 (47%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++    +   +G ++ E  + LE    L++S + D++ I+  +       
Sbjct: 4   ILVVDDDPHLRELVRIILQKEGFAVYEAADGLEALSKLETS-KADLAIIDLMMPN--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + +RA   +P++ ++        +  F +G DD + KP    E++ARV A+ +R +
Sbjct: 61  FELCQELRASYDIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALLKRYQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   + G + +     +       F LP +E  +L  L    G+  ++  +   I+G
Sbjct: 121 IIASQNVQIGKLMMNRKNYEVIAGNMKFTLPLKEFELLFKLAGYPGRTFSRDTLIEDIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +     E  ++ HI++LR++   +     + + R LGY ++ +
Sbjct: 181 -YGFEGNERTLDVHINRLRQRFPEEKTDFRITTIRGLGYRLEVD 223


>gi|150389321|ref|YP_001319370.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949183|gb|ABR47711.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 106/224 (47%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++    L  ++G  + E F+ +E    L++  + D+  ++  +       
Sbjct: 4   ILIVDDDPHIRELVKVLLRNEGFDVHEAFDGVEALSKLETI-KVDMVILDVMMPN--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L R +R H  +PL+ ++        +  F  G DD + KP    E++ RV A+ +R +
Sbjct: 61  WQLCRELREHYDLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALLKRYQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++     G + +        V  E F LP +E  +L  + +   K  ++ Q+   I+G
Sbjct: 121 IITSQTVRIGELVMNQKNYKVTVGSESFTLPLKEFELLFKMASYPEKTFSREQLIEDIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D A  E  ++ HI++LR++   +     + + R LGY ++ +
Sbjct: 181 -YDFAGNERTLDVHINRLRQRFPEENHSFKIRTIRGLGYRLEVS 223


>gi|256851719|ref|ZP_05557107.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661563|ref|ZP_05862475.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282933547|ref|ZP_06338917.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|297205337|ref|ZP_06922733.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615677|gb|EEU20866.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547620|gb|EEX23598.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281302290|gb|EFA94522.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|297149915|gb|EFH30212.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 237

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E      +    D+  ++  L  K    L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEINPDLMILDLMLPKK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +  N     G + +  D    E  G+   L  RE  +L YL ++ G+ + + 
Sbjct: 123 VQKQVDENENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +    +G +D   +   V+  + +LR+K+ +  +    + ++R +GY +
Sbjct: 183 HLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYV 231


>gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 235

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +      E       S   D+  ++  L       LE
Sbjct: 6   LVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLP--KIDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA    P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   +
Sbjct: 64  VAKQVRAKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDAT 123

Query: 123 NNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +          + G + +  D      +GE   L  RE  +L YL  + G+ + +  + 
Sbjct: 124 VSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +       + ++R +GY +
Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229


>gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
 gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
          Length = 233

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   N  E    L  S   D+  ++  L  K    +
Sbjct: 6   ILVVDDEEPIAKILDFNLRKEGYDVIVANDGEKAVKLAFSEDPDLILLDLMLPEK--DGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I ++   S    +   + G DD V KP   RE++ARV    RR+  
Sbjct: 64  EVCREVRAQKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVAK 123

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                E           I ++ +    +  GE   L RRE  +  YL  +RG+ + +  +
Sbjct: 124 QTEVVEEKNTSEVVIKDIVIYPEAYIIKKNGEEVDLTRREFDLFYYLAQHRGQVLTRENL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
              ++G +D   +   V+  + +LR+K+  +    + + ++R +GY
Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGY 228


>gi|221636014|ref|YP_002523890.1| response regulator [Thermomicrobium roseum DSM 5159]
 gi|221157462|gb|ACM06580.1| response regulator [Thermomicrobium roseum DSM 5159]
          Length = 225

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 102/221 (46%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G ++    S +    L +  R D+  ++  L   G   L 
Sbjct: 5   LVVDDDTRLVEMLRRTLSYEGFTVSVAQSGDEALRLVAERRPDLIVLDWLLP--GMDGLA 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA     P++ ++   +++  +   DSG DD + KP    E+LAR+ A+ RR++ 
Sbjct: 63  VVQRLRAAGDGTPILMLTARDAVEDRVLGLDSGADDYLVKPFAPAELLARIRALLRRVEP 122

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++        + +    R+       F L  RE  +L Y M +  + + + QI  A++G
Sbjct: 123 ASDEKPLVFADLVLDPVTRETRRGDRSFRLSPREFDLLSYFMRHPRRVLTRNQILLAVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D    ++V++ +I  LR+KL        + + R +GY +
Sbjct: 183 -HDFDGYDSVLDVYIGYLRQKLEAGGEPRLIHTVRGVGYVL 222


>gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
 gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL R2-561]
 gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes
           J0161]
 gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
          Length = 236

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|15964268|ref|NP_384621.1| phosphate regulon transcriptional regulatory protein [Sinorhizobium
           meliloti 1021]
 gi|150395352|ref|YP_001325819.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|307307005|ref|ZP_07586744.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307320659|ref|ZP_07600072.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|6685724|sp|Q52990|PHOB_RHIME RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|152404|gb|AAB42026.1| phosphate regulatory protein [Sinorhizobium meliloti]
 gi|15073445|emb|CAC45087.1| Phosphate regulon transcriptional regulatory protein [Sinorhizobium
           meliloti 1021]
 gi|150026867|gb|ABR58984.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
 gi|306893694|gb|EFN24467.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306901945|gb|EFN32544.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 227

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E        D+  ++  L   G   +
Sbjct: 5   IAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLP--GVSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +    +G DD V KP    E++ARV A+ RR
Sbjct: 63  ELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K    +     G I +  +      +     L   E R+LE+LM++ G+  +++Q+   
Sbjct: 123 AKPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 183 VWG-HDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226


>gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 227

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++        +   +    + E    +      D+  ++  +         
Sbjct: 8   LVVDDEAEMREMLGMYLQKENYQVLHAENGEEALDMLYDHEVDLIILDVMMPD--MDGFT 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + IR    +P++ ++        +     G DD V KP   +E+LARV A+ RR   +
Sbjct: 66  ACKKIREKYMMPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEALLRRSNQA 125

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      I V    R   V GE   L RRE  +L +LM + GK  ++ Q+   I+GL 
Sbjct: 126 FFDVVSHSEITVQKSARQVLVGGERINLARREYDLLLFLMEHEGKVFSREQLHDVIWGLD 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            E      V++H+  LR KL++      + +   +GY  D
Sbjct: 186 TEKGSYRTVDTHVKTLRFKLKDAGAK--IKTVWGIGYKFD 223


>gi|309774605|ref|ZP_07669630.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917636|gb|EFP63351.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
          Length = 229

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +  F           + R D++ ++  +        
Sbjct: 5   ILVLDDEKEIADLVALYLNNEGYEVHKFYDSRDALEYMKNNRVDLALLDVMMPE--ISGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR     P+I ++        +     G DD + KP +  E++ARV A  RR K 
Sbjct: 63  EICKIIREKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N      N  +   + + +D     +  EV  L   E  IL YL  N+G+ +   ++F 
Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNKGRVITSEELFE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           A++         N V  HI +LR+K+         + +   +GY I+
Sbjct: 183 AVWKEK-YFDSNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIE 228


>gi|258516072|ref|YP_003192294.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779777|gb|ACV63671.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 225

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          DG S+   ++      + +  + D+  ++  +        
Sbjct: 7   ILIADDEPRMLKLVSDFLKKDGHSVFVADNGRQALDIFNEQQLDLVILDVMMPE--YDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        L  F+ G D+ V KP   + ++ARV A+ RR+  
Sbjct: 65  AVCREIRKTSHVPIIMLTARAEESDELFGFELGADEYVTKPFSPKILVARVQALLRRIAE 124

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N+      + +   GR   V G    L  +E  +L YL+ N+G+ + + QI +A++  
Sbjct: 125 HKNQMISIEGLEIDESGRCVTVDGVPLDLSMKEFELLNYLVNNQGRALNRDQILNAVWD- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++   +   V++HI  LR KL  K  F  + + R LGY  + 
Sbjct: 184 YNYFGDARTVDTHIKNLRHKLGAKGLF--IKTIRGLGYKFEV 223


>gi|254560526|ref|YP_003067621.1| phoP: DNA-binding response regulator in two-component regulatory
           system with PhoQ [Methylobacterium extorquens DM4]
 gi|254267804|emb|CAX23651.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           DM4]
          Length = 225

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +A   + G   +     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKA--DGV 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +   RA  + P+I ++        +D FD+G DD V KP H  E++ARV AI RR  
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y 
Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGTPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  + +LRKKL      D + + R LGY ID N
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLIDPN 219


>gi|228918481|ref|ZP_04081925.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228950319|ref|ZP_04112489.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809337|gb|EEM55788.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228841166|gb|EEM86364.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 242

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++     E    L +  + D+  ++  +       +
Sbjct: 12  ILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMP--KIDGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 70  EVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFLV 129

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R E   I +         +GE  PL  +E  +L +  +N  +   K+Q+
Sbjct: 130 LGSEAGDREQTRIEFKEISIDMKKYVVFKEGEEIPLTAKEMELLRFFASNPEQVFTKSQL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++G  +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 190 FRNVWG-DNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKF 236


>gi|206900113|ref|YP_002250961.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
 gi|206739216|gb|ACI18274.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
          Length = 232

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +    L   +G  +E                 D+  ++  L  K     
Sbjct: 4   ILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEK--DGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++        +     G DD + KP   +E+LAR+ A+ RR + 
Sbjct: 62  EVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + +    P  +    R  +V+G+   L  RE  IL+ L+++ G+   +  I   I+
Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G  +   E   V+ +I  LR+K+ +       + + R LGY  
Sbjct: 182 GE-NFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKF 223


>gi|330811228|ref|YP_004355690.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379336|gb|AEA70686.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 225

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  ++   + E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLQTRLTDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLP--GISGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL R +R+  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  E   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL    GF P+D+ R LGY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEAPAGFKPIDTVRGLGYLFN 221


>gi|91788128|ref|YP_549080.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91697353|gb|ABE44182.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 243

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G            +    +   D   ++  L   G+  L
Sbjct: 7   ILIVEDEPAIAELIAVNLRHGGFEPVVVQDSVAAQRELDAVLPDAILLDWMLP--GQSGL 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R  R       +P++ ++        +   D+G DD + KP   +E+LAR+ A+ RR
Sbjct: 65  ALARHWRKQVRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRR 124

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N+    G + + +       Q +   L   E ++L YLM +  +  +++ +   
Sbjct: 125 RAPESVNDSVTVGALVLDAGTHRISFQNQELKLGPTEFKLLHYLMKHAERVHSRSTLLDK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 185 VWGDH-VFIEERTVDVHVKRLREALGAAG--TMVETVRGAGYRL 225


>gi|308185867|ref|YP_003929998.1| phosphate regulon transcriptional regulatory protein phoB [Pantoea
           vagans C9-1]
 gi|317047132|ref|YP_004114780.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|308056377|gb|ADO08549.1| Phosphate regulon transcriptional regulatory protein phoB [Pantoea
           vagans C9-1]
 gi|316948749|gb|ADU68224.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 229

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +          +           D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGKLIEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +         +     +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEVSGHDRMVQTVRGTGYRF 225


>gi|241895845|ref|ZP_04783141.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870888|gb|EER74639.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 234

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           L  S   D+  ++  L     +  
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYDVAVAMDGREALDLFESEEPDLVLLDQMLPEV--EGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQ P+I ++   S    +   + G DD V KP  +RE+LAR+ A  RR   
Sbjct: 62  EVLRQIRTKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQSP 121

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + +          + G + +  D       G+   L  RE  +L +L  + G+ + +  
Sbjct: 122 VSGQSGQVDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLSKHIGQVMTRDD 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +   ++G +D   +   V+  + ++R+K+        +  ++R +GY +
Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGYYL 229


>gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 226

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       D    +E     +    L      D+  ++  L       +
Sbjct: 3   ILLVEDDVSIAEAIEEDLSDQHYLVEVAYDGQEAWELVDVFEYDLILLDVMLP--KIDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R+   Q P++ I+   ++   +   D+G DD + KP   +E+ ARV A+ RR  
Sbjct: 61  SLCRKFRSRGCQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRRGN 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S     E G IR+         Q E  PL  +E ++LE+ + +  +  +++Q+   ++ 
Sbjct: 121 PSLPPVLEWGNIRLDPSSCRVYYQHEEIPLSPKEYKLLEFFLRHERRVFSRSQLLEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            F+   EE  V++HI  LR+KL       D +++   LGY +
Sbjct: 180 PFERLPEEATVKAHIRSLRQKLEACGAPSDVIETVYGLGYRL 221


>gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41]
 gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 240

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  F     +E L    RE +      ++       
Sbjct: 15  ILVVDDEKEIADLIELYLKNENYNV--FKYYSAQEALACIEREGLDLAILDIMMPEIDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + + IR     P+I ++        ++ F  G DD + KP    E++ARV A  RR   
Sbjct: 73  TILQKIRETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRRFTL 132

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K   +  +   + +  + R   +      L   E  IL YL +NRGK ++  ++F
Sbjct: 133 YNQSSKPHEDTIDFAGLMINKNTRQVLLNERQLSLTPTEFSILWYLSSNRGKVISSEELF 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+G        N V  HI  LR+K+R+ +     + +   +GY+I+
Sbjct: 193 QEIWGEK-YFNSNNTVMVHIRHLREKMRDSVENPKFIKTVWGVGYTIE 239


>gi|312797149|ref|YP_004030071.1| transcriptional regulatory protein qseB [Burkholderia rhizoxinica
           HKI 454]
 gi|312168924|emb|CBW75927.1| Transcriptional regulatory protein qseB [Burkholderia rhizoxinica
           HKI 454]
          Length = 333

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 103/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D +++ +G       DG +++                 D+  ++  L  +    L+
Sbjct: 118 LLVEDDSMIAEGVRKALRADGWAVDWVQDGAAAILAADGEPYDLMLLDLGLPQR--DGLD 175

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA   V P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 176 VLKTVRAKKHVFPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALVRRQAG 235

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        + +    R+  ++G    L  RE  +LE L+A  G  ++K+Q+   IYG 
Sbjct: 236 RAETVIRHRGLTLDPAAREVTLEGVPVALSAREYGLLEALLARPGAVLSKSQLEEKIYG- 294

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +  N VE +I  LRKKL    G + + + R LGY +
Sbjct: 295 WGEEIGSNTVEVYIHSLRKKL----GAELIRTVRGLGYMM 330


>gi|227510111|ref|ZP_03940160.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190490|gb|EEI70557.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 245

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 107/239 (44%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +G  +   ++ +E  +   +     D+  ++  L  K   
Sbjct: 3   LLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKK--D 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +E+ + IRA S+ VP+I ++   S    +  F+ G DD V KP     ++AR+ A+ RR
Sbjct: 61  GMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRR 120

Query: 119 LKVSNN---------------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMA 162
                                +  T   ++ ++ R+  + G++ P L  +E  +L  L  
Sbjct: 121 AHTEAQAEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQ 180

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +  ++ Q+   ++G ++   +E  V++HI KLR+K+   +G   + +   +GY  D
Sbjct: 181 KPRQVFSREQLLELVWG-YEYYGDERTVDAHIKKLRQKIER-VGPQVIQTVWGVGYKFD 237


>gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 227

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 102/220 (46%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++  +       L  +   D+  ++  +   G   +
Sbjct: 3   LLIIEDEPGIAGFLKEGLEEEYFAVDVASDGRTGLDLAMTNEYDLLLVDWMIP--GISGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   + VP+I ++   +++  +   D+G +D + KP    E+LAR+    RR  
Sbjct: 61  EVCRRLRKEGNDVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRRRG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +++  TG + V         +     L  +E  +LE+L+ N+G+   +++I   ++ +
Sbjct: 121 SESSKLSTGELTVDPASHQARCESIDLALTPKEFALLEFLLRNKGRVCTRSRIIEHVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + +V++ +I+ LRKKL      D + + R +GY I
Sbjct: 181 H-FDSDTSVIDVYINFLRKKLDAAGCRDLIQTIRGVGYII 219


>gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 224

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D         G + +                 D+  ++  +        
Sbjct: 4   LLLVDDEERMLDLLALYLEPAGYACDKVTRGPEAIRYIQEETYDLILLDIMMPET--DGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R IR  SQVP+I ++        +     G DD ++KP   +E+LAR+ A+ RR  +
Sbjct: 62  EVCRQIRKMSQVPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVLRRSNQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N   E   ++          Q +   +  +E  +L   + +  +  ++ Q+ ++I+G 
Sbjct: 122 NQNETIEKNGLKWDPVSFQVFYQNQPVSVTPKEFAMLGLFLQHPNQVFSREQLLTSIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222
           ++   E+  ++SHI  +R KLRN        + +   +GY   W
Sbjct: 181 YEVETEDRTIDSHIRNVRDKLRNAGFPVDSHLQTVWGVGYKWVW 224


>gi|291006081|ref|ZP_06564054.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 237

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+D         G ++E     E    L +  + D+  ++  L G G   LE
Sbjct: 15  LVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVG--GLE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   +VP++ ++        +   + G DD V KP   RE++ RVA+I RR + S
Sbjct: 73  VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 132

Query: 123 N----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +R+  D R   + G    L  RE  +L +L+ + G+  ++ ++   ++
Sbjct: 133 QPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G      + + V  H+ +LR+K+         +++   +GY  D
Sbjct: 193 GW--SFGDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYD 234


>gi|242373793|ref|ZP_04819367.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348530|gb|EES40132.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 241

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 93/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASNGKEAYELAMENNYACILLDLMLPE--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R H + P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 63  EVASKLREHKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +N+           E   + + +D        E   L  +E  +L YL     K   + Q
Sbjct: 123 ANSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEV 233


>gi|6689352|emb|CAB65451.1| VicR protein [Streptococcus pyogenes]
          Length = 239

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           +    + D+  ++  L       L
Sbjct: 7   ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPE--LDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 65  EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 124

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +++  D    +  G+   L  RE  +L +L  + G+ + 
Sbjct: 125 IETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVMT 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 185 REHLLEIVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 235


>gi|331091983|ref|ZP_08340815.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402882|gb|EGG82449.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  + E  L  +  ED + I   L+  G    
Sbjct: 4   ILIVEDEEAIADLEKDYLELSGFEVEVAN--DGEMGLSKALGEDYNLIILDLMLPGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I IS        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICRRVRDEKNTPIIMISAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++ +  R   V GE      +E  +L +L ++      K Q+F
Sbjct: 122 LIGSTIEENKVIEIRGLKIDTTARRVWVNGEEKTFTTKEFDLLTFLASHPNHVYTKDQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 SEIWDM-ESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRF 227


>gi|260664969|ref|ZP_05865819.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561023|gb|EEX26997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
          Length = 237

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++   + + EE ++     D   +   L+   +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFEVD--TAYDGEEAVKKVNEIDPDLMILDLMLPKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +  N     G + +  D    E  G+   L  RE  +L YL ++ G+ + + 
Sbjct: 123 VQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +    +G +D   +   V+  + +LR+K+ +  +    + ++R +GY +
Sbjct: 183 HLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYV 231


>gi|241889083|ref|ZP_04776387.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
 gi|241864332|gb|EER68710.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
          Length = 234

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   N  E    L  +   D+  ++  L  K    +
Sbjct: 6   ILVVDDEEPIANILEFNLKKEGYDVIVANDGEKAVELAFNDNPDLILLDLMLPKK--DGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I ++   S    +   + G DD V KP   RE++ARV    RR+  
Sbjct: 64  EVCREVRAKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             I ++ +    +  GE   L RRE  +  YL  +RG+ + +  
Sbjct: 124 QQEEVAEEKNGGDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGY 229


>gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
 gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
          Length = 242

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++     E    L +  + D+  ++  +       +
Sbjct: 12  ILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMP--KIDGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 70  EVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFLV 129

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R E   I +         +G+  PL  +E  +L +   N  +   K+Q+
Sbjct: 130 LGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFALNPEQVFTKSQL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++G  +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 190 FRNVWG-DNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKF 236


>gi|229102593|ref|ZP_04233297.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228680820|gb|EEL34993.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 228

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 227


>gi|227549745|ref|ZP_03979794.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078180|gb|EEI16143.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 230

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 103/229 (44%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    L   +G   +   + + +  L+    + V  +   L+  G    
Sbjct: 4   ILIVEDEESLADPLAYLLRKEGF--QAIVAPDGQSALREFDSDSVDLVLLDLMLPGMSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + IRA S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  DVCKKIRAVSAVPIIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGPE 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++      E G +++        V GE   +P +E  +LEYLM N G+ + + Q+
Sbjct: 122 VVDEEVEADERILEGGRVKMDVSRHTVFVDGEPVSMPLKEFDLLEYLMRNPGRVLTRGQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              I+G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 182 IERIWGA-DYVGDTKTLDVHVKRLRTKIEVAPSRPTQLVTVRGLGYKFE 229


>gi|116333280|ref|YP_794807.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098627|gb|ABJ63776.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 235

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +              +      E    L    + DV  ++  L       +E
Sbjct: 5   LVVDDEPAIVTLLQYNLEQADYQVVTAIDGEQALNLALHEKFDVILLDLMLP--KMDGVE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + +R    + P+I I+   S   T+   + G DD + KP   RE++AR+ A+ RR   
Sbjct: 63  VTKRLRQEKVKTPIIMITAKTSEFDTVFGLELGADDYITKPFSPREVIARMKAVMRRYHE 122

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       +R + G + +  D    +   +   L  +E  +L +     GK  ++ 
Sbjct: 123 EEPTDTVPSQQGHRLQVGDLTIDQDKFQVKRGNQAIELTPKEFELLLFFAKRPGKVWSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
           Q+   ++G FD + +  +V+ H+S LR+K+         + + R  GY+ + 
Sbjct: 183 QLLEGVWG-FDYSGQTRMVDIHVSHLREKIEQDPKHPTLLKTVRGFGYTFEV 233


>gi|30018518|ref|NP_830149.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229125764|ref|ZP_04254792.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|29894058|gb|AAP07350.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228657704|gb|EEL13514.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 233

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAEDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|47569605|ref|ZP_00240282.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47553720|gb|EAL12094.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 224

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++          +      D+  ++  L   G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLEVALETNYDLILLDLMLP--GLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEH 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N+         +++  + R      E   L  +E  +L   M N  + + +  + + +
Sbjct: 122 IENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNVNRVLTRDVLLNQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|325571287|ref|ZP_08146787.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325155763|gb|EGC67959.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 237

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 103/236 (43%), Gaps = 22/236 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE----DVSAIEAFLIGKG 57
            ++I+D   V +     F ++G   E     + +E L++ A E    D+  ++  L    
Sbjct: 3   ILMIEDNESVSEMMQMFFLNEGW--EAVFKYDGKEGLEAFAAEPDKWDMITLDLNLPS-- 58

Query: 58  EKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              + + R IR   S VP+I ++   S    +   + G DD V KP     ++AR+ A++
Sbjct: 59  MDGMMVAREIRKISSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALH 118

Query: 117 RRLKVSNNR----------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
           RR ++                T   ++ +  R+  + G+    L  +E  +L  L     
Sbjct: 119 RRSELVEKTTPEASDATFDIVTDHFKMNTKTREAYLNGKPIDGLTPKEFDLLYTLAKKPR 178

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 179 QVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 232


>gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 229

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G  +    +      +  SA  D+  ++  +        
Sbjct: 5   ILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSADPDLIILDVMMPKV--DGF 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R +R   S VP++ ++    ++  +   D G DD + KP    E+LARV A+ RR  
Sbjct: 63  EVCRRLREGGSTVPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLRRKD 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + R     I +  D R+    G+   L  +E  +L   M N  + + +  I   
Sbjct: 123 SGSRSGSQRLIFEDIIMDLDSREVTRAGQRLELTAKEFELLHLFMQNPKRLLTRDLIMDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G +D + E NV+E +I+ LR+K     G   + + R  GY +
Sbjct: 183 IWG-YDYSGESNVLEVYIAMLRQKTEEHGGKRVIQTIRGAGYIL 225


>gi|148545612|ref|YP_001265714.1| DNA-binding response regulator CreB [Pseudomonas putida F1]
 gi|148509670|gb|ABQ76530.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 226

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     DG S E           Q     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLVYALQADGHSTEWVTLGSAALDQQRQRPADLVILDIGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R +R  ++VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 ET    + +       + +   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 122 RAEVVGETTLFHLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLLDAL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYS 219
             +   E  ++SHI  LR KLR   G  +P+ + R LGYS
Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRQVAGDAEPIQTHRGLGYS 220


>gi|67923615|ref|ZP_00517086.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67854539|gb|EAM49827.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 252

 Score =  238 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 102/234 (43%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL---------QSSAREDVSAIEAF 52
            ++++D  +++D  +    D+G  +   +       L          ++   D+  ++  
Sbjct: 21  ILVVEDEDVIRDMIVLALEDEGYEITAVSDGRTALNLLQQEAKNPTATAMEFDLLVLDLM 80

Query: 53  LIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L       L++ R++R H  + P++ +S   S    +   + G DD + KP   RE++AR
Sbjct: 81  LPQV--NGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVAR 138

Query: 112 VAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             A+ RR K +++ +    +   I +++      +  E   L  +E R+LE  M+   + 
Sbjct: 139 CRALIRRQKFTSSSSSSVKQFRDITLYTQECRVTLAEEEINLSPKEYRLLELFMSYPRRV 198

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++ Q+   I+G  D   +   V+ HI  LR+KL  +      + + R  GY  
Sbjct: 199 WSRDQLIEQIWGP-DFLGDTKTVDVHIRWLREKLEQDPSQPQYLITVRGFGYRF 251


>gi|330885633|gb|EGH19782.1| sensor histidine kinase BaeS [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 690

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 473 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLP--GRDGM 530

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 531 DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTSS 590

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++       ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 591 TDPH-TPKVLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 649

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 650 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 689


>gi|229175245|ref|ZP_04302760.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           MM3]
 gi|228608077|gb|EEK65384.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           MM3]
          Length = 230

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 99/228 (43%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  + EE +Q+  +     +   ++      L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIAS--DGEEGVQAFFKSSFDLVILDIMMPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E   +   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNEKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes
           10403S]
 gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL J2-003]
 gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
 gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
          Length = 236

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|167039421|ref|YP_001662406.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300915404|ref|ZP_07132717.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307725255|ref|YP_003905006.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166853661|gb|ABY92070.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300888464|gb|EFK83613.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307582316|gb|ADN55715.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 231

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   + +   +    +G S+    +           + D+  ++  L   G    
Sbjct: 5   IFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLDTFKKEKPDLVILDLMLP--GISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  S VP++ ++        ++ F  G DD + KP   RE++ RV AI RR   
Sbjct: 63  ELCKRLRQFSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               AE        + V         +G V  L   E +IL+ L+ N  +   + ++   
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + G FD    +  +++HI  LR+K+ +       + +   +GY  
Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|163938276|ref|YP_001643160.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860473|gb|ABY41532.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 237

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++   + E    L +    ++  ++  +       +
Sbjct: 6   ILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLMMPKV--DGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +          G+   L  +E  +L++  +N  +   KTQ+
Sbjct: 124 LGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYTEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKF 230


>gi|229105162|ref|ZP_04235813.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-28]
 gi|228678343|gb|EEL32569.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-28]
          Length = 230

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G    L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|229816438|ref|ZP_04446739.1| hypothetical protein COLINT_03491 [Collinsella intestinalis DSM
           13280]
 gi|229807980|gb|EEP43781.1| hypothetical protein COLINT_03491 [Collinsella intestinalis DSM
           13280]
          Length = 237

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++   +      G+  EGF+     +   +    D   ++  L       
Sbjct: 1   MIYYVEDDDNIRGLTLYALRQQGIEAEGFSCDSEFKAAVARRVPDAVLLDIMLPDT--DG 58

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +RA    + VP++ ++   S    +   D G DD + KP    E+ +R  A+ R
Sbjct: 59  LEIMRRLRADQATATVPIMMLTAKDSELDKVVALDGGADDYLAKPFSLMELTSRCRALLR 118

Query: 118 R----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R     + +      G I +    R+  V G    L  RE  +LEYLM   G    +  +
Sbjct: 119 RGGMMSRPAPEMLSVGGIELSPSHREVRVDGRELKLTLREFDLLEYLMRKPGVVFTRESL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +++G +D       V+ H+  LR+KL +    D +++ R +GY +
Sbjct: 179 LQSVWG-WDFDGGSRTVDVHVQTLRQKLGSH--ADRIETVRGVGYRL 222


>gi|221067401|ref|ZP_03543506.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712424|gb|EED67792.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 224

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +         G  +E  N      ++  S+  D+  ++  L   G    
Sbjct: 3   ILIIEDEIKSAEYLKKGLTSSGYQVEVSNDGVDGLFVAQSSEFDLLILDVMLP--GIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R  R  SQVP++ ++   S++  +   + G DD + KP  + E+LARV  + RR  +
Sbjct: 61  SFIRRFRERSQVPVLFLTARDSVEDRVKGLELGADDYLIKPFSYAELLARVRTLLRRTPM 120

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + V    R     G+   L  +E  +L+ L+ ++G+ ++++QI S ++ +
Sbjct: 121 RQQDIFQLADLEVDMLKRRAIRGGQRIDLTNKEFALLQLLLQHKGEVMSRSQIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR K+ +      + + R +GY I+
Sbjct: 181 -NFDSDTNVVDVAIRRLRAKIDDGFAVKLIQTVRGMGYRIE 220


>gi|258514654|ref|YP_003190876.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778359|gb|ACV62253.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 225

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G ++E  N  +    L  +   D+  ++  +   G    
Sbjct: 5   ILVIDDDPRITALLKRTLLFNGYTVEAANDGKAGITLLENNHFDLVILDVMMP--GLDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IR +  +P++ ++    ++  +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 63  QVCGQIREYYDLPVLMLTARDEVEDRVKGLDLGADDYLVKPFAMTELLARIRALLRRSGK 122

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +        + + +  R+            RE  +L+  M N    + K  I   I+
Sbjct: 123 TEAQPAILSYADLSMDTGTREVFRNKRQLNPTAREYELLKLFMENPRLVLNKELIMERIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   E NV+E +I  LR KL        + + R  GY +
Sbjct: 183 G-YDYQGESNVLEVYIVMLRNKLEACGEKRLIHTVRGAGYVL 223


>gi|83643658|ref|YP_432093.1| phosphate regulon transcriptional regulatory protein phoB [Hahella
           chejuensis KCTC 2396]
 gi|83631701|gb|ABC27668.1| Phosphate regulon transcriptional regulatory protein phoB [Hahella
           chejuensis KCTC 2396]
          Length = 230

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++                        L    + D+  ++  L   G   +E
Sbjct: 7   LIVDDEPAIREMIAVALEMADYDYLEAGDAREAHALIIDQKPDLILLDWMLP--GVSGIE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             R ++     S++PLI ++        +   + G DD + KP   RE++AR+ A+ RR 
Sbjct: 65  FARRLKRDQNTSEIPLIMLTAKTEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRT 124

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            V       E   +R+         +G+   +   E ++L++ M ++ +   + Q+   +
Sbjct: 125 AVQGMETPIEVEGLRLDPVCHRVTAKGDALNMGPTEYKLLQFFMTHQERVYTRGQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L        V + R  GY  
Sbjct: 185 WGG-NVYVEERTVDVHIRRLRKALEPSHHH-LVQTVRGTGYRF 225


>gi|309811868|ref|ZP_07705641.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
 gi|308434157|gb|EFP58016.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
          Length = 237

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++           G+S +          L  +   DV  ++  L   G   +E
Sbjct: 13  LVVDDEPVLSGTVKNYLERAGMSAQTCGDGLVALDLVRATAPDVVVLDLGLP--GMDGVE 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R  S   ++ ++        L     G DD + KP   RE++AR+  + RR +  
Sbjct: 71  VCRQLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAG 130

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + +    G + V    R  E+      L R E  +L+ L  + G+ + + Q+  A+
Sbjct: 131 GAGTTASVLRIGALTVDQSSRRVELDASPVELTRTEFDLLQALAEHPGRVLNRRQLTDAV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +G  D   ++++V+ HI+ LRKKL  +      V + R +GY +
Sbjct: 191 WGE-DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 233


>gi|229055112|ref|ZP_04195541.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
 gi|228721234|gb|EEL72761.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
          Length = 237

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++   + E    L +    ++  ++  +       +
Sbjct: 6   ILIADDDKEIRDLLKRYLERELYMVDTAVNGEEALCLFNQNNYNLVILDLMMPKV--DGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +          G+   L  +E  +L++  +N  +   KTQ+
Sbjct: 124 LGSNTNVQEKTTLTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKF 230


>gi|188996277|ref|YP_001930528.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931344|gb|ACD65974.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 231

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 107/230 (46%), Gaps = 13/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +I+D   + +     F  +G  +  F + +         + D+  ++  +       
Sbjct: 3   LIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEV--DG 60

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE  +++R+  +   +PLI ++   +    +   + G DD V KP   RE+LARV A+ R
Sbjct: 61  LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120

Query: 118 RLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R K      +    + G +++  +  +  ++G+   L   + ++L  L+ ++GK +++  
Sbjct: 121 RSKSLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDY 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           I   ++  +D+ V +  ++ HI KLR+ L+     + + + R +GY  + 
Sbjct: 181 IIEHVW-AWDKDVYDRTIDVHIKKLRELLKEYG--NCIKTIRGVGYKWEC 227


>gi|163850840|ref|YP_001638883.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218529660|ref|YP_002420476.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240137967|ref|YP_002962439.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
 gi|163662445|gb|ABY29812.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218521963|gb|ACK82548.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240007936|gb|ACS39162.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
          Length = 225

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +A   + G   +     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKA--DGV 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +   RA  + P+I ++        +D FD+G DD V KP H  E++ARV AI RR  
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y 
Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  + +LRKKL      D + + R LGY ID N
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLIDPN 219


>gi|228905009|ref|ZP_04069054.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228854640|gb|EEM99253.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 233

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+G+   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGDEVKLTPREFSILELLARNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|148261933|ref|YP_001236060.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326405441|ref|YP_004285523.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
 gi|146403614|gb|ABQ32141.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325052303|dbj|BAJ82641.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
          Length = 236

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 8/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +           G  ++            + A  D+  ++  L       +E
Sbjct: 10  LVVEDEAPLVTLLRYNLEKSGFRVDEAGDGGEALGRINEAMPDLVLLDWMLPT--MSGIE 67

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R        P+I ++     Q T+   ++G DD + KP     ++AR+ A+ RR 
Sbjct: 68  VCRQLRRKPSTRHLPVIMLTARAEDQDTVRGLETGADDYITKPFSPEALIARIRALLRRS 127

Query: 120 KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  R       + +          G V  L   E R+LE+ M +  +  ++  + +A+
Sbjct: 128 GTAPARAPLVFHDLELDPTTHRVTRGGRVLHLGPTEFRLLEFFMRHPRRVFSREDVLNAV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G  D  VE   V+ HI +LRK +  +   D V + R  GY++D +
Sbjct: 188 WGR-DIHVEPRTVDVHIRRLRKSINAETDIDLVRTVRAAGYALDLD 232


>gi|323487492|ref|ZP_08092786.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
           WAL-14163]
 gi|323694424|ref|ZP_08108595.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323399174|gb|EGA91578.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
           WAL-14163]
 gi|323501505|gb|EGB17396.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 232

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    +      D+  ++  L        E
Sbjct: 5   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIRMAKETEYDIVLLDVMLP--KFDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + IR  S++P+I ++        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 63  VCQAIREFSEMPIIMVTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNAKK 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + S    + G +++ +D R   +  +   L  +E  +LE L+ N  K  ++ ++ 
Sbjct: 123 SKKESQSSGKVVQAGDLKLDTDSRRVFIAEKEINLTAKEFDLLELLVCNPNKVYSREELL 182

Query: 175 SAIYGLFDEAVEE-NVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G    A  +   V+ H+ +LR+K+  +      V +K  +GY  
Sbjct: 183 RFVWGNKAAAGGDVRTVDVHVRRLREKIEPSPSEPKYVHTKWGVGYYF 230


>gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121]
          Length = 219

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +   ++  N          +   D+  ++  L       L
Sbjct: 4   ILIVEDEKNLARFIELELTHENYQVDIENDGATGLDKALNKTYDLIILDLMLPN--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR + 
Sbjct: 62  EICRQIRQQQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +      I +  +  +  V G    L + E  +   L  N+   + + QI + ++G +
Sbjct: 121 KKDTININGIIIDKEAFEVTVDGTQLDLTKTEYDLFYVLAENKNHVLQREQILNHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NTEVETNVVDVYIRYLRNKLKPFGKDKVIETVRGVGYVI 218


>gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
 gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
          Length = 230

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   V+D        +G  +      E    +    + D+  ++  +       L
Sbjct: 3   IVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKEQPDLVILDVMMP--KMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+H    P++ ++    +   +   D+G DD + KP    E+LARV ++ RR  
Sbjct: 61  EVCRHLRSHGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S        +++  D RD         L R E  +L+ LM N  + ++++ I 
Sbjct: 121 AEASGPSSQAEITFEDLKLNPDTRDVVRGNRTISLTRTEFALLQLLMTNPRRVLSRSTIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 181 EEVWG-YDFPTSGNALEVYIGYLRRKTEQEGEPRLIHTVRGVGYVL 225


>gi|42781734|ref|NP_978981.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737657|gb|AAS41589.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 224

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++     +  + L+++   +   I   L+  G   +
Sbjct: 4   ILIIEDEENLADFLELELKYEGYKVDI--QFDGRKGLEAALETNYDLILLDLMLPGLNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEQ 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N+         +++  + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 IENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|89094628|ref|ZP_01167565.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89081098|gb|EAR60333.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 228

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        DG + E F   +       ++R D++ I+  L        
Sbjct: 8   ILIVEDEPSIADNVSIALQLDGFTSEHFILAQEGLNALQNSRFDLAIIDVGLPDF--NGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S +P+I ++        +   + G DD V KP   RE+  RV AI RR+  
Sbjct: 66  ELCKRIREFSNIPIIFLTARSDEIDRILGLELGADDYVTKPFSPRELSTRVKAILRRVAP 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +   +  + +         + +  PL R E  +L  ++ N  +  ++ Q+  A +   
Sbjct: 126 SASTERSDTLILDQKRACIFYREQKLPLTRIEYLLLSKMLNNPEQVFSREQLMQAAWDHP 185

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + +++   V++HI  +R KL         + + R LGYS+
Sbjct: 186 EHSLD-RAVDTHIKTIRAKLNEFNPDQQLIKTHRGLGYSL 224


>gi|322421457|ref|YP_004200680.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320127844|gb|ADW15404.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   + D        +G     F++        +    D+  ++  L   G   
Sbjct: 4   LILIVDDEPAIVDTIQYALETEGFETLCFSTGMPVIAALAGHPADLVILDIGLPDIG--G 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R+IR  S VP+I ++        +   + G DD + KP   RE+ ARV A+ RR  
Sbjct: 62  LELCRLIRQTSSVPIIFLTARTDEIDRIVGLELGADDYITKPFSPREVSARVKAVLRRTS 121

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N   + G   V    R     G +  L R E  +L+  +   G   ++ Q+   ++ 
Sbjct: 122 NPGNAMSSPGTFSVNESKRQISYFGRMLALSRYEYEMLKTFIRRPGHVFSREQLMQLVWE 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             + +++   +++HI  +R KL+  +   +P+ + R  GY++
Sbjct: 182 NPECSLD-RTIDAHIKNIRAKLKKIQPDREPIVTYRGTGYAL 222


>gi|229155571|ref|ZP_04283679.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627889|gb|EEK84608.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 225

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 103/223 (46%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + +++++  + LQ      V  +   ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGF--QTYDAIDGLDALQKIDEVKVDMVILDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ H+++LR+K + +     + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLEVS 224


>gi|315643933|ref|ZP_07897103.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280308|gb|EFU43597.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 91/230 (39%), Gaps = 17/230 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE----DVSAIEAFLIGKGE 58
           +++DD   +         ++G  +    + + EE L + A      D+  ++  +     
Sbjct: 5   LIVDDDKEISGLISIYLENEGYRV--IQAHDGEEALLAMATNEGTVDLVILDVMMPR--L 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             ++  R IR  S +P++ +S        +    +G DD + KP +  E+  RV  + RR
Sbjct: 61  NGIDTCRRIRETSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRR 120

Query: 119 L--------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +   +R +   + +     +    G    L  RE  IL  L    G+  + 
Sbjct: 121 STQYNTELQQGHTDRIQIDGLDINRTTHEVTANGRSVSLTAREFEILYLLARQPGRIFSA 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             IF  ++      V  N V  HIS LR KL  +LG+  + +   +GY I
Sbjct: 181 EDIFQQVWKEK-YYVSNNTVMVHISNLRDKLEKELGYKLIQTVWGVGYKI 229


>gi|323705241|ref|ZP_08116816.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535143|gb|EGB24919.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   + D   A    +G ++    +         +   D+  ++  L   G    
Sbjct: 3   ILAIDDEEKILDVIKAYLEKEGYTVLTETNGANALNTFKTVNPDLVILDLMLP--GMSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S+VP++ ++   S    +  F  G DD + KP   RE+  RV AI RR K 
Sbjct: 61  EICRKIRALSKVPILMLTAKVSEDDKVYGFTIGADDYLTKPFSPRELTMRVKAILRRTKN 120

Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +      G + + +   + + +G +  L   E ++L  ++ N  K   ++++   
Sbjct: 121 DLPLNDIFMFNDGDLVIDTRSYEVKKKGRIVNLTPNEYKLLTVMVQNPNKVFTRSELIEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI-DWN 223
            +G +D    +  +++HI  LR+K+ +       + +    GY   + N
Sbjct: 181 AFG-YDFDGFDRTIDAHIKNLRQKIEDDPKNPTYIKTVYGAGYKFGEEN 228


>gi|254719962|ref|ZP_05181773.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|265984972|ref|ZP_06097707.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306837250|ref|ZP_07470137.1| DNA-binding response regulator [Brucella sp. NF 2653]
 gi|264663564|gb|EEZ33825.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306407654|gb|EFM63846.1| DNA-binding response regulator [Brucella sp. NF 2653]
          Length = 225

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++          +G  ++  + L+       SAR D+  ++  L     + L
Sbjct: 3   IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYVESARYDLVLLDLMLPD--GQGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y 
Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E H+S+LRKKL    G   +++ R +GY +
Sbjct: 180 SFDTEVESNTMEVHVSRLRKKL----GHAIIETVRGIGYRL 216


>gi|254452863|ref|ZP_05066300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
 gi|198267269|gb|EDY91539.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
          Length = 227

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++        +G  +    + E    + +    DV  ++  L       +E
Sbjct: 7   LVIEDEPAQREVLSYNLNAEGYRVTTAENGEQGLLVVAEDAPDVIVLDWMLPHV--SGIE 64

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++  +    +P+I +S        +   ++G DD V KP    E++ARV    RR+
Sbjct: 65  ICRQLKTRNDTRTIPIIMLSARSEEVDKVRGLETGADDYVVKPYAVAELMARVRTQLRRV 124

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S        G I + +D            L   E R+L   M   G+ +++ Q+   +
Sbjct: 125 RPSKVGQVLTFGDIELDADTHRVTRSDVELKLGPTEFRLLATFMEKAGRVLSREQLLDRV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ H+ +LRK L    G DP+ + R  GY++
Sbjct: 185 WGR-DIYVDTRTVDVHVGRLRKVLTQNGGDDPLRTVRGAGYAL 226


>gi|134099882|ref|YP_001105543.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912505|emb|CAM02618.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 234

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+D         G ++E     E    L +  + D+  ++  L G G   LE
Sbjct: 12  LVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVG--GLE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   +VP++ ++        +   + G DD V KP   RE++ RVA+I RR + S
Sbjct: 70  VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 129

Query: 123 N----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +R+  D R   + G    L  RE  +L +L+ + G+  ++ ++   ++
Sbjct: 130 QPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           G      + + V  H+ +LR+K+         +++   +GY  D
Sbjct: 190 GW--SFGDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYD 231


>gi|304395459|ref|ZP_07377342.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304356753|gb|EFM21117.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 229

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +          +           D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGRLIEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +         +     +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEVSGHDRMVQTVRGTGYRF 225


>gi|300022658|ref|YP_003755269.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524479|gb|ADJ22948.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 262

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D             ++G + +     E    L +    DV  ++  L       L 
Sbjct: 40  LVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPL--LDGLS 97

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + + +RA     P++ +S    +   +    +G DD + KP  + E+LARV A+ RR   
Sbjct: 98  VIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTAP 157

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    R   G + +          GE   L  RE R+LEYLM + G+ V +T +   ++ 
Sbjct: 158 EEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVWD 217

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ H+S+LR K+        + + R  GY+I
Sbjct: 218 -YHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTI 257


>gi|229060336|ref|ZP_04197702.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
 gi|228718926|gb|EEL70543.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
          Length = 224

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++    L+  + L+++       I   L+  G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYIVDI--QLDGRKGLEAALENSYDLILLDLMLPGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +         +++  + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 TEQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|229093633|ref|ZP_04224733.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-42]
 gi|228689720|gb|EEL43527.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-42]
          Length = 230

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E +G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKKGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|227513040|ref|ZP_03943089.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083797|gb|EEI19109.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 245

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 107/239 (44%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +G  +   ++ +E  +   +     D+  ++  L  K   
Sbjct: 3   LLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKK--D 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +E+ + IRA S+ VP+I ++   S    +  F+ G DD V KP     ++AR+ A+ RR
Sbjct: 61  GMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRR 120

Query: 119 LKVSNN---------------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMA 162
                                +  T   ++ ++ R+  + G++ P L  +E  +L  L  
Sbjct: 121 AHTEAQVEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQ 180

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +  ++ Q+   ++G ++   +E  V++HI KLR+K+   +G   + +   +GY  D
Sbjct: 181 KPRQVFSREQLLELVWG-YEYYGDERTVDAHIKKLRQKIER-VGPQVIQTVWGVGYKFD 237


>gi|146307998|ref|YP_001188463.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576199|gb|ABP85731.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 225

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        ++G  ++   + E   +   S   D++ ++  L   G   +
Sbjct: 3   LLVVEDEALLRHHLFTRLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGLP--GMSGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R+     P++ ++   + Q  ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRSQDKNFPILILTARGNWQDKVEGLSCGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  E G + +  + +   V  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFTKSTIEAGSLVLDLNRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL   LG   +++ R  GY  +
Sbjct: 180 PGDDERDPNVIEVLVGRLRRKLEAMLGGKLIETVRGQGYMFN 221


>gi|89099082|ref|ZP_01171961.1| ResD [Bacillus sp. NRRL B-14911]
 gi|89086212|gb|EAR65334.1| ResD [Bacillus sp. NRRL B-14911]
          Length = 238

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +E   + +  E L+ +   D   I   L+  G+  +
Sbjct: 7   ILVVDDEVRIRRLLKMYLERENYVIE--EAGDGSEALEKAFETDYDVILLDLMMPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCRELRERKATPVIMLTAKGEEVNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSST 124

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++         +      + + +D       G+   L  +E  +L +L  +  K   + Q
Sbjct: 125 TSYLQTETAAKDVIVFRHLTIDNDAHRVIADGKEVSLTPKEYELLYFLAKSPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSEQAARMIVTVWGVGYKFEV 235


>gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL J1-023]
          Length = 240

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 8   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGI 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 66  EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 126 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 186 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|324326021|gb|ADY21281.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 225

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 5   ILIVDDDPHIRELVSIFLEREGF--QTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTTGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 224


>gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299]
 gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115]
 gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300]
 gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224]
 gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948]
 gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937]
 gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8117]
 gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C427]
 gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus A9765]
 gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A10102]
 gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299]
 gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115]
 gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300]
 gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224]
 gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948]
 gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937]
 gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C427]
 gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A10102]
 gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus A9765]
 gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8117]
 gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus A017934/97]
          Length = 247

 Score =  237 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ +    L          ++  L       +
Sbjct: 11  ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPE--MDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++   +R H Q P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 69  QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 128

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 129 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 189 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 239


>gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 233

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G ++    +             D+  ++  L        
Sbjct: 10  ILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDIIVLDVMLPD--MNGF 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A    P++ ++     +  +     G DD V KP    EI+AR+ AI RR  
Sbjct: 68  GVTKRLRGAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 127

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++       G + +  D  +  V      L   E ++L YLM N  + ++K QI   ++
Sbjct: 128 QADEDAVIRAGELTMDQDTHEVFVGDTPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   +  +VES+IS LR+K+        + +KR  GY +
Sbjct: 188 -EYDFNGDAGIVESYISYLRRKVDAHSSEALIQTKRGFGYML 228


>gi|291521712|emb|CBK80005.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 17/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++++D   + +        D + L GF+ +     +  L+++  ED + I   L+    
Sbjct: 4   ILIVEDEVAIAE-----LEKDYLELSGFDVVMQHTGDAGLKAALNEDFNLIILDLMLPNV 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ + +R     P+I +S        +     G DD + KP    E++ARV A   R
Sbjct: 59  DGFEICKKVREKKNTPIIMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 118

Query: 119 LKV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +        +N   E   I++    R   V GE      +E  +L +L  N      K 
Sbjct: 119 YERLVGSGVKANEIIEIRGIKIDKTARRVYVNGEEKAFTTKEFDLLTFLAENPNHVFTKE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++F+ I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 179 ELFNKIWDM-ESIGDIATVTVHIKKIREKIEFNTSKPQYIETIWGVGYRF 227


>gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes
           Clip81459]
 gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-064]
 gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-175]
 gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816]
 gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220]
          Length = 236

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis]
          Length = 239

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 100/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESVT-LLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLP--KLDGI 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 62  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 121

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++   +E            G +++  D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 122 MAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +  + SA++  +D A +  +V+ HIS LR K+ N       + + R LGY ++
Sbjct: 182 RDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLE 233


>gi|104780534|ref|YP_607032.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila
           L48]
 gi|95109521|emb|CAK14222.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila
           L48]
          Length = 225

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++   + E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLFTRLGEGGHVVQAVANAEEALYQAEQYNHDLAVIDLGLP--GMSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R+  Q  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRSLGQTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +      L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDDAPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY
Sbjct: 180 PDDEERDPNVIEVLVGRLRRKLEGDNGFKPIDTVRGLGY 218


>gi|302542579|ref|ZP_07294921.1| transcriptional regulatory protein CseB [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460197|gb|EFL23290.1| transcriptional regulatory protein CseB [Streptomyces
           himastatinicus ATCC 53653]
          Length = 246

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D   A    +G  ++             + + D+  ++  L   G   L
Sbjct: 22  ILVVEDDPTIVDAIAARLRAEGFQVQTAADGPAAVDTAEAWQPDLLVLDVMLP--GFDGL 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ 
Sbjct: 80  EVCRRVQARRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 139

Query: 122 S--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +        +     G + +    R   V+G    L   E  +L  L  +    +++ Q+
Sbjct: 140 AALAANTPRSGILRLGELEIDHAQRRVRVRGSDVHLTPTEFDLLVCLANSPRAVLSREQL 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 LAEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|182419686|ref|ZP_02950927.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237665577|ref|ZP_04525565.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376423|gb|EDT74004.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237658524|gb|EEP56076.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 229

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 104/227 (45%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V +       +DG+     ++ + EE L+   +E+V  +   L+       
Sbjct: 4   ILICDDNEAVHETIGTYLKNDGMIY--ISAFDGEEALEKFKKENVDLVILDLMMPKIFGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S+VP+I ++        +   + G DD + KP   RE++AR+  I+RR+  
Sbjct: 62  EVCKEIRKISEVPIIMLTAKGEEIDKIIGLEIGADDYIVKPFSPREVVARIKTIFRRVNS 121

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++            + +  D  +  + GE   +  +E  IL  +  N G+ +++ +I  
Sbjct: 122 KSDLLPNRKIFSYENLNIDLDKYETVINGEKIDITPKECEILYLIATNEGRVLSREEILD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G +D   +  VV++ I +LRKKL  +     + +   +GY  + 
Sbjct: 182 KVWG-YDYFGDTRVVDTQIKRLRKKLPEEDEKWVIKTVYGIGYKFEV 227


>gi|116872936|ref|YP_849717.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741814|emb|CAK20938.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 228

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +   ++     + +   ++  ++D       L+      +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKE--EIDATFVHDGKLGFETFFKDDFDIAIIDLMLPNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNN 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               +   +  ET   ++    R+   QG++   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 SSSNENEEDILETNYFKISKRTREIFYQGKLLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+        + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDT-KPFLHTVWGVGYKFD 225


>gi|228985086|ref|ZP_04145253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774573|gb|EEM22972.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 225

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ H+++LR+K + +     + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLEVS 224


>gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
 gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
          Length = 234

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G   E   +             D+  ++  L   G   +E
Sbjct: 14  LIVEDETRIARFLQMELEHEGFEAETEGNGTRAYERIIQENFDIILLDVMLP--GMDGIE 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +RA + VP+I ++   +++  ++  D G DD + KP    E++AR+    RR    
Sbjct: 72  ICRRVRAVTNVPIIMLTAKDAVEDRVEGLDIGADDYITKPFAVPELIARLKNALRRRDIS 131

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +++R     + +F    + +V GE   L +RE  +LEYL+ N+   + + QI   ++
Sbjct: 132 TEDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   E NVV+ +I  LR KL ++     + + R +GY +
Sbjct: 192 G-FDYTGETNVVDVYIRYLRAKLDDRFNKKYIYTVRGVGYVV 232


>gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E    +    R D+  ++  L       +
Sbjct: 5   ILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLP--KMDGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R  S  VP++ ++    +   +   D+G DD + KP   +E+++R+ AI+RR++
Sbjct: 63  QVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQ 122

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +AE      G + V ++ R+  + G    L  +E  +L +L  +RGK +++ Q+  
Sbjct: 123 TLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLH 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++  +    +  +V+ HIS LR K+       + + + R +GY +
Sbjct: 183 GVWD-YHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227


>gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 225

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++I+D   +          +G + E                 D+  ++  L       
Sbjct: 6   LVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV--LDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S  P+I ++   ++Q  ++  DSG DD + KP    E+LARV A  RR+ 
Sbjct: 64  LEVARRIRKTSNTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRAHLRRVN 123

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +  DGR+    G    L  +E  +LE L  N GK  ++ +I   ++ 
Sbjct: 124 PAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     NVV+ +I  LR+KL        + + R +GY +
Sbjct: 183 -PEYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222


>gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL S4-378]
          Length = 240

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 8   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGI 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 66  EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 126 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 186 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|266619604|ref|ZP_06112539.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288868826|gb|EFD01125.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 229

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G  +E  N  E    L  +  ED   +   L+  G    
Sbjct: 4   ILIIEDEESIAELEKDYLELSGFEVEIENDGEA--GLAKALHEDFDLLILDLMLPGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICRKVREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGTPDNEIVEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|229017942|ref|ZP_04174820.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
 gi|229024164|ref|ZP_04180630.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228737121|gb|EEL87650.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228743367|gb|EEL93489.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
          Length = 224

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++     +  + L ++  ++   I   L+  G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDI--QFDGRKGLDAALEKNYDLILLDLMLPGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +         +++  + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 TEQKHPSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLFMFMKNINRVLTRDILLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|163848921|ref|YP_001636965.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|163670210|gb|ABY36576.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
          Length = 234

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   +   ++G  +           L  S + D+  ++  L   G   +
Sbjct: 6   ILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVMLP--GLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +   + V ++ ++        L     G DD + KP   RE++ARV AI RR +V
Sbjct: 64  EVCRQLHRDTSVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRV 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       +   + +  + R+ E  G    L  RE  +L  L +  G+   + ++ 
Sbjct: 124 IRAIEVNQRPILQFEGLLIDPERREVERNGVRVDLTPREFDLLYALASYPGRVFTREELL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++G  D A  + VV+ HI  LR+KL +   G   V + R +GY  
Sbjct: 184 QRVWGP-DFAGIDWVVDVHIGTLRRKLDDDHHGTPLVQTVRGVGYKF 229


>gi|23012185|ref|ZP_00052333.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 225

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +A   + G   +     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKA--DGV 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +   RA  + P+I ++        +D FD+G DD V KP H  E++ARV AI RR  
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y 
Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  + +LRKKL      D + + R LGY ID N
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLIDPN 219


>gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 239

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++         G  +           L      D+  ++  L        
Sbjct: 8   LVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLVRDTEPDLVVLDVMLPD--MDGF 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   Q +P++ ++     Q  +     G DD V KP    E++AR+ A+ RR  
Sbjct: 66  TVTRRMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 125

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   +       + +  D  +    G V  L   E ++L YLM N G+ ++K QI   +
Sbjct: 126 PTPVDDAVLRFADLELDDDSHEVRRAGRVVDLSPTEFKLLRYLMLNPGRVLSKAQILDHV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           +  +D   + N+VES+IS LR+K+ N    D       + +KR +GY +
Sbjct: 186 W-QYDWGGDANIVESYISYLRRKIDNAPLPDGSTPEPLIATKRGVGYLL 233


>gi|227494982|ref|ZP_03925298.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831434|gb|EEH63817.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
          Length = 227

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 97/219 (44%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G +++  +S +      ++ + D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMIGIVLETEGYNVDYCHSGDAALETFAATQPDLVLLDVMLP--GMDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKV 121
           +  +IR  S VP++ ++        +   ++G DD V KP   +E++ARV A  R R + 
Sbjct: 64  ICSLIRQKSDVPIVMLTARSDTADVVAGLEAGADDYVPKPFKPKELIARVKARLRGREET 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +      G + V   G      G+   L   E  +L  L  +  K  ++ ++   ++G +
Sbjct: 124 TEEHVRLGDLVVDVSGHHVTRAGQPIQLTPLEFDLLVALGRSPWKVFSREELLETVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIERDPEHPEIVITVRGVGYR 221


>gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E   +++  + L+ +       +   +       L
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYDTEV--AVDGADALEKATAYQPDLVVLDIQMPRMDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IR A +  P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 71  TAARRIRGAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     ++    G +R+    R+    G    L R E  +LE  +A+  + + + Q
Sbjct: 131 YAATAVGVPEDDALTFGDLRMDLATREVTRGGRSVELIRTEFTLLEMFLAHPRQVLTREQ 190

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 ILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 237


>gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 254

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +           + D+  ++  L       L
Sbjct: 31  IMIVEDERRIARFLQMELEHEGFETESEENGRRAYERIVQEQYDLVLLDIMLPD--MDGL 88

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++    ++  ++  D G DD + KP   +E+LARV A  R  K 
Sbjct: 89  EVCRRVREISDVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARVRAAIRVHKA 148

Query: 122 SNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +              + ++    +  V+G++  L ++E  +LEY++ N+   + + QI  
Sbjct: 149 NEAGNRDERVLAVKDLVLYPGRYEVRVKGDLVELTKKEYSLLEYMLRNKPNVLTRDQILQ 208

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D   + NVV+ +I  LR K+  +     + + R +GY+I
Sbjct: 209 EVWG-YDYVGDTNVVDVYIRYLRAKIDERFDDKYIYTVRGVGYAI 252


>gi|225568830|ref|ZP_03777855.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
           15053]
 gi|225162329|gb|EEG74948.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
           15053]
          Length = 231

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D       ++  ++ + +N+L+  + ++S    D++ ++  +       
Sbjct: 5   ILIVDDEQEIADLVALYLQNENFTVFKHYNALDALDCIRSET-PDLAILDVMMPD--MDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R IR   + P+I ++        +     G DD + KP    E++ARV A  RR K
Sbjct: 62  LELCRNIREQYRYPVIMLTAKDGEIDKITGLTLGADDYITKPFLPLELVARVKAQLRRYK 121

Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N       +      + +     +  +  +   L   E  IL  L   +G+ V+  ++
Sbjct: 122 RYNTGAGPDEDVIVHSGLVINVRTHECTLNEKPLSLTPTEFSILHILCRKKGEVVSSEEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           F  I+         N +  HI  LR+K+ +       + +    GY I+
Sbjct: 182 FHEIWNDEYFTKSNNTITVHIRHLREKMGDSFEDPKYIKTVWGCGYKIE 230


>gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 227

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +          +G   E                 ++  ++  L       
Sbjct: 8   LILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVLDLMLPV--MDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP++ ++    ++  ++  D+G DD + KP    E+LAR+ A  RR+ 
Sbjct: 66  IEVARRIRKTSNVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRVT 125

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +  +GR+    G    L  +E  +LE L  + GK  ++ +I   ++ 
Sbjct: 126 PAITGEIRVADLIINLEGREVYRSGRRIELSNKEFELLELLAKSPGKVFSRFEIEEKVWP 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      NVV+ +I  LRKKL        + + R +GY +
Sbjct: 186 GYQ--GGSNVVDVYIGYLRKKLEGIGERRLIHTVRGVGYVL 224


>gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 236

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +      G  G ++      E      +  R D+  ++  L        
Sbjct: 14  LLVVEDDPNICELLATSLGYAGFTVHRAEGGEEAVRAVARHRPDLVVLDVMLPDF--DGF 71

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR+ S   P++ ++   +L+  +     G DD V KP    E++AR+ A+ RR K
Sbjct: 72  EVARRIRSGSDRTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRRSK 131

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R +   + +  +  +    G    L   E ++L Y M N G+ ++K QI   +
Sbjct: 132 GDAPPPPRLQYADLELDEETHEVWRGGNSVQLSPTEFKLLRYFMVNAGRVLSKAQILDHV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++ +VES++S LR+K+ N      + + R +GY +
Sbjct: 192 W-RYDFRGDDGIVESYVSYLRRKIDN-TEPRLIQTLRGIGYVL 232


>gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99]
          Length = 236

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPE--MDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +          +G  +           L  S   D+  ++  L       +
Sbjct: 5   ILLVEDEAGLARFLELDLMHEGFDVHVCGDGREGLELALSEPWDLILLDVMLPS--LNGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P+I I+   S+   +   D+G DD + KP    E+LAR+ A++RR+  
Sbjct: 63  EVCRRIRAAKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + V    R  +       L +RE  +L   M N    + +  +   ++G
Sbjct: 123 ESGGQVLTFKDLVVDMQARTVKKGNAFIELTKREYDLLVAFMQNINVVLTRDLLLEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE NVV+ ++  LR+KL        + + R  GY +
Sbjct: 183 -FDTEVETNVVDVYVRYLRQKLDEHNKERYIQTVRGAGYVM 222


>gi|188588892|ref|YP_001920540.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|251779766|ref|ZP_04822686.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|188499173|gb|ACD52309.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|243084081|gb|EES49971.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 234

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G  +   N+      +  +    +  ++  L   G    
Sbjct: 6   ILIVDDEEHIIELLKFNLINAGYKVISANNGIDALKIAKAENPKLILLDLMLP--GLDGF 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + ++ +     + +I ++        +   + G DD + KP   RE+LARV A+ RR
Sbjct: 64  DVCKEVKKNKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123

Query: 119 LK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +  N  E+  +++  D  +  +  +   L  +E  +L+ L+ N+GK + +  + 
Sbjct: 124 TYPGVDIEENSYESQGLKIDFDRHEVFINNQKIELTLKEFDLLKILIKNKGKILQRETLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 DKIWG-YEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFN 230


>gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + +      G +G  L           L  +   D+  ++  +        
Sbjct: 8   ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPH--MDGY 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R+IR    ++P+I +S   S    +     G DD + KP +  E+LARV A  RR +
Sbjct: 66  EVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFR 125

Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      + +    G + +  + R+  +  +   L  +E  IL  L ++  K  + 
Sbjct: 126 QLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSA 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             IF  ++G        N V  HI  LRKKL  +K     + +   +GY+ 
Sbjct: 186 EHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAF 236


>gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 238

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +  +++   + E    L +    ++  ++  +       +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYTVDTAINGEEALHLFNQNNYNLVILDLMMP--KIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKF 230


>gi|227524257|ref|ZP_03954306.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088488|gb|EEI23800.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 245

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 107/239 (44%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +G  +   ++ +E  +   +     D+  ++  L  K   
Sbjct: 3   LLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKK--D 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +E+ + IRA S+ VP+I ++   S    +  F+ G DD V KP     ++AR+ A+ RR
Sbjct: 61  GMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRR 120

Query: 119 LKVSNN---------------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMA 162
                                +  T   ++ ++ R+  + G++ P L  +E  +L  L  
Sbjct: 121 AHTEAQVEEPEHSEEEQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQ 180

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +  ++ Q+   ++G ++   +E  V++HI KLR+K+   +G   + +   +GY  D
Sbjct: 181 KPRQVFSREQLLELVWG-YEYYGDERTVDAHIKKLRQKIER-VGPQVIQTVWGVGYKFD 237


>gi|13324642|gb|AAK18824.1|AF327739_1 response regulator Rr1 [Streptococcus thermophilus]
          Length = 235

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++  + D+  ++  L       
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEA-KKPDLVILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR +
Sbjct: 61  LEIVKEIRKTSHTPIIMLSAKDSEFDKVVGLEIGADDYVTKPFSNRELLARIKAHLRRTE 120

Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G + +  D    + +G    L  RE  +L +L  + G+ + 
Sbjct: 121 TIETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|42783708|ref|NP_980955.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739637|gb|AAS43563.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 230

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTLDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY +D 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLDV 229


>gi|229055102|ref|ZP_04195532.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228721250|gb|EEL72776.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  237 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRILEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGDMKINISTHKVIVEGEEVKLTPREFSILELLARNPGVVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|218233709|ref|YP_002367381.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229073107|ref|ZP_04206291.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           F65185]
 gi|229079836|ref|ZP_04212368.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           Rock4-2]
 gi|218161666|gb|ACK61658.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228703420|gb|EEL55874.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           Rock4-2]
 gi|228710015|gb|EEL62005.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           F65185]
          Length = 224

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++    L+  + L ++  ++   I   L+  G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDI--QLDGRKGLSAALEKNYDLILLDLMLPGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEH 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N+         +++  + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 IENKQVSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAIVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
 gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
          Length = 240

 Score =  237 bits (606), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +G  + G    +         + D+  ++  L     +  
Sbjct: 8   ILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAIEEFEKHQFDLVVLDLMLPKIPGE-- 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++RR   
Sbjct: 66  RVCRTIRDTSDVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 125

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       + G + +   G    V+G+   L   E ++L  L  + G+   + ++   +
Sbjct: 126 ADEPAVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL  +      + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFE 229


>gi|313623681|gb|EFR93833.1| transcriptional regulatory protein SrrA [Listeria innocua FSL
           J1-023]
          Length = 228

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +   ++     + +   ++  ++D       L+      +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKE--EIDATFVHDGKLGYETFFKDDFDIAIIDLMLPNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNN 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               +   +  ET   ++    R+   Q E+   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 HTTTENDEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+        + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDT-KPFLHTVWGVGYKFD 225


>gi|309390021|gb|ADO77901.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 229

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 106/230 (46%), Gaps = 19/230 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G  +    + +        A  D+  ++  L       +
Sbjct: 4   ILVVEDEKNIRELIKFNLENAGYEVLTAENGKIAL-NSLEAEIDLVVLDLMLPEV--DGM 60

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +RA+    Q+P+I ++        +   + G DD + KP   RE++AR+ AI+RR
Sbjct: 61  EVCRQMRANKKLRQIPIIMLTAKGEEIERILGLEMGADDYMTKPFSPRELVARIKAIFRR 120

Query: 119 L--------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +        K+ +     G +++     +  +  E   L  +E  +L YL+ N+G+ +++
Sbjct: 121 IKELKVDQEKIKDKIISAGKLKLDIPRHEVFLGTEKIILTPKEFELLRYLVINQGRVLSR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   I+G ++ A +   V+ HI +LR+K++     D + + R +GY  
Sbjct: 181 DLLLEKIWG-YEYAGDTRTVDVHIRRLRQKIKA----DQIVTVRGVGYKF 225


>gi|300172610|ref|YP_003771775.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299886988|emb|CBL90956.1| Two-component response regulator yycF [Leuconostoc gasicomitatum
           LMG 18811]
          Length = 235

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    + +  + D+  ++  L       +
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYEVVTAADGQEALTVFNEEKPDLVLLDQMLPE--IDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR+ S+ P+I ++   S    +   + G DD V KP  +RE++ARV A  R  K 
Sbjct: 62  EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    V+ +  E G + +          G+   L  RE  +L YL  +  + + + 
Sbjct: 122 VAQHIDESVVNTDDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHISQVMTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 HLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230


>gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 227

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +++   A    +G +++     E   ++      DV+ I+  L       +
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVAIIDLGLP--KMSGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R      P++ ++   S Q  ++    G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  ELIKALRDEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRRAA 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPVLECGPVALDLAAQTVTVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL  +    P+++ R  GY  
Sbjct: 181 Q-DFDRDSNVLEVFIGRLRKKLDPEGELKPIETVRGRGYRF 220


>gi|285017381|ref|YP_003375092.1| two-component system regulatory protein phob [Xanthomonas
           albilineans GPE PC73]
 gi|283472599|emb|CBA15104.1| probable two-component system regulatory protein phob [Xanthomonas
           albilineans]
          Length = 229

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                      + L +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGDFEPVHAGDAREAQSLIADRVPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R  R      +VP+I ++        +   ++GVDD V KP   RE+LAR+ A+ RR
Sbjct: 63  ELARRWRKDAMTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +     G +R+              P+   E R+L + M +  +  ++ Q+   
Sbjct: 123 TREDDEDGSVSVGNLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYSRAQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGS-VYVEERTIDVHIRRLRKTLEPFAVENMVQTVRGSGYRF 225


>gi|307266330|ref|ZP_07547869.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391193|ref|ZP_08212737.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306918637|gb|EFN48872.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992762|gb|EGD51210.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 231

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G     + + + EE L+ +  ++   I   ++       
Sbjct: 5   ILIVDDEKPIVEIIKYNLEKEGYI--TYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ ++        +   + G DD + KP   RE++ARV A  RR+ +
Sbjct: 63  SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S N      +++       E   +   L  RE  +L +L+ N+G   ++  +   +
Sbjct: 123 NGNESGNIIYVKNLKIDMSKYKVEKNNKEIELTSREFELLRFLILNKGLIFSREMLLEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 183 WG-YEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYF 225


>gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 224

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 103/224 (45%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  D+G ++           +      D++ ++  L       +
Sbjct: 3   ILVVEDEQRLARLLQRVLQDEGHTVHLAYDGVTGLDMALRGDYDLAILDLMLPD--LDGV 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA   + P++ ++   +++  +   ++G DD + KP    E++ARV A+ RR +
Sbjct: 61  EICRHLRAARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRRAR 120

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++      +   + +     +    G+V  L  +E  +LEYLM N G+ + ++QI   +
Sbjct: 121 GTDGPPTILQVADLTLDLLRHEARRGGQVIELTPKEFALLEYLMRNPGRALTRSQIIDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +D     NVV+ +I  LR K+        + + R +GY I+
Sbjct: 181 W-QYDLDSLSNVVDIYIHYLRDKIDRGFDRPLIKTVRGVGYKIE 223


>gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 230

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G ++    S             D+  ++  L        
Sbjct: 7   ILIVDDEPNIRDLLTTSLRFAGFAVRAVGSGAQTISAVLEEEPDLIILDVMLPD--MNGF 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA     P++ ++     +  +     G DD V KP    EI+AR+ AI RR  
Sbjct: 65  GVTKRLRASGYTSPILFLTAKDDTEDKIMGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 124

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G + +  D  +  +  E   L   E ++L YLM N  + ++K QI   ++
Sbjct: 125 QDDEETIIRAGDLTMDQDTHEVSIGSEQIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   +  +VES+IS LR+KL        + +KR  GY +
Sbjct: 185 -EYDFNGDAGIVESYISYLRRKLDIHTEEPLIQTKRGFGYML 225


>gi|332535571|ref|ZP_08411344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035028|gb|EGI71547.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 212

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 93/207 (44%), Gaps = 13/207 (6%)

Query: 24  VSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPL 75
           +   GF ++E E++  + A       D+  ++  L   G   +++ +  + +    Q+P+
Sbjct: 5   LEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLP--GGSGIQIAKKFKQNEHTRQIPI 62

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRV 133
           I ++     +  +   + G DD V KP   +E++AR+ A+ RR+  ++     E   +R+
Sbjct: 63  IMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIRRVSPTSLEEAIEVHGLRL 122

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
                    +G    +   E R+L + M +  +  ++ Q+   ++G  +  VE+  V+ H
Sbjct: 123 DPISHRVTSEGNELDMGPTEFRLLHFFMTHPERVYSREQLLDHVWGT-NVYVEDRTVDVH 181

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I +LRK +        V + R  GY  
Sbjct: 182 IRRLRKAIGPLGHDRLVQTVRGAGYRF 208


>gi|229196205|ref|ZP_04322954.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228587270|gb|EEK45339.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 225

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ H+++LR+K + +     + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLEVS 224


>gi|259909297|ref|YP_002649653.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia pyrifoliae Ep1/96]
 gi|224964919|emb|CAX56442.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia pyrifoliae Ep1/96]
 gi|283479352|emb|CAY75268.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           pyrifoliae DSM 12163]
          Length = 229

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +          +    L      D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   ++G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEAGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLTLDPSSHRVMSGNQPLDMGPTEYKLLHFFMTHTERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALELNGHDRMVQTVRGTGYRF 225


>gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
 gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
          Length = 247

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +    + E  E L  +  +    +   ++  G   +
Sbjct: 27  ILLVEDEKHIARFVELELQHEGYDVTV--AFEGREGLSLATTDAFDVLLLDVMLPGINGI 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQVP+I I+   ++   +   D+G DD + KP    E+LAR+  I RR   
Sbjct: 85  EICRRIRTQSQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        I +     +  VQG    L + E  +L+ L+ ++ +   +  I +++
Sbjct: 145 QEPANSECLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  +E NVV+ +I  LR KL        +++ R +GY +
Sbjct: 205 WG-YDTDIETNVVDVYIRHLRSKLPGDTNA-YIETVRGVGYVM 245


>gi|86741097|ref|YP_481497.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86567959|gb|ABD11768.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 283

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A           ++G +++         W  +    D   ++  L   G    E
Sbjct: 33  LVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLP--GLDGFE 90

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R   +  P++ ++    +   +   D+G DD + KP    E+ AR+ A+ RR  V
Sbjct: 91  VCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGAV 150

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G +R+          G    L  +E  +L  LM +  + + +T I   ++  
Sbjct: 151 ERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD- 209

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F      N+V+ ++  +R+K+    G   +++ R +GY +
Sbjct: 210 FAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRL 249


>gi|17989359|ref|NP_541992.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62317173|ref|YP_223026.1| two component response regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269154|ref|YP_418445.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|148557916|ref|YP_001257276.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|189022433|ref|YP_001932174.1| Response regulator receiver [Brucella abortus S19]
 gi|225686080|ref|YP_002734052.1| DNA-binding response regulator [Brucella melitensis ATCC 23457]
 gi|237816732|ref|ZP_04595724.1| two component response regulator [Brucella abortus str. 2308 A]
 gi|254691342|ref|ZP_05154596.1| DNA-binding response regulator [Brucella abortus bv. 6 str. 870]
 gi|254698453|ref|ZP_05160281.1| DNA-binding response regulator [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254699520|ref|ZP_05161348.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513]
 gi|254706226|ref|ZP_05168054.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10]
 gi|254711480|ref|ZP_05173291.1| DNA-binding response regulator [Brucella pinnipedialis B2/94]
 gi|254731901|ref|ZP_05190479.1| DNA-binding response regulator [Brucella abortus bv. 4 str. 292]
 gi|256015015|ref|YP_003105024.1| two component response regulator [Brucella microti CCM 4915]
 gi|256029890|ref|ZP_05443504.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1]
 gi|256043150|ref|ZP_05446091.1| DNA-binding response regulator [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111861|ref|ZP_05452826.1| DNA-binding response regulator [Brucella melitensis bv. 3 str.
           Ether]
 gi|256256527|ref|ZP_05462063.1| DNA-binding response regulator [Brucella abortus bv. 9 str. C68]
 gi|256262794|ref|ZP_05465326.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|260544408|ref|ZP_05820229.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260564371|ref|ZP_05834856.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260756952|ref|ZP_05869300.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759674|ref|ZP_05872022.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260762916|ref|ZP_05875248.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882765|ref|ZP_05894379.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261313668|ref|ZP_05952865.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261319091|ref|ZP_05958288.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261749975|ref|ZP_05993684.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|265986906|ref|ZP_06099463.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265989580|ref|ZP_06102137.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993318|ref|ZP_06105875.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|294853244|ref|ZP_06793916.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297249884|ref|ZP_06933585.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306840921|ref|ZP_07473664.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|17985230|gb|AAL54256.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62197366|gb|AAX75665.1| two component response regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82939428|emb|CAJ12388.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|148369201|gb|ABQ62073.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|189021007|gb|ACD73728.1| Response regulator receiver [Brucella abortus S19]
 gi|225642185|gb|ACO02098.1| DNA-binding response regulator [Brucella melitensis ATCC 23457]
 gi|237787545|gb|EEP61761.1| two component response regulator [Brucella abortus str. 2308 A]
 gi|255997675|gb|ACU49362.1| two component response regulator [Brucella microti CCM 4915]
 gi|260097679|gb|EEW81553.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260152014|gb|EEW87107.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260669992|gb|EEX56932.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260673337|gb|EEX60158.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260677060|gb|EEX63881.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872293|gb|EEX79362.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261298314|gb|EEY01811.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261302694|gb|EEY06191.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261739728|gb|EEY27654.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262764188|gb|EEZ10220.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263000249|gb|EEZ12939.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263092602|gb|EEZ16837.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|264659103|gb|EEZ29364.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294818899|gb|EFG35899.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297173753|gb|EFH33117.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306289073|gb|EFM60333.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|326410408|gb|ADZ67472.1| Response regulator receiver [Brucella melitensis M28]
 gi|326553701|gb|ADZ88340.1| Response regulator receiver [Brucella melitensis M5-90]
          Length = 225

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++          +G  ++  + L+       SAR D+  ++  L     + L
Sbjct: 3   IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPD--GQGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y 
Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E H+S+LRKKL    G   +++ R +GY +
Sbjct: 180 SFDTEVESNTMEVHVSRLRKKL----GHAIIETVRGIGYRL 216


>gi|290959362|ref|YP_003490544.1| two-component systen response regulator [Streptomyces scabiei
           87.22]
 gi|260648888|emb|CBG72002.1| putative two-component systen response regulator [Streptomyces
           scabiei 87.22]
          Length = 244

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 21/233 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   V+D        +G     +++G ++LE      ++ R D+  ++  +    
Sbjct: 13  ILIVDDEPAVRDALRRSLAFEGYGTEVAVDGADALEKA----TAYRPDLVILDVQMPR-- 66

Query: 58  EKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L   R IR A    P++ ++   ++   +   D+G DD + KP    E+ ARV A+ 
Sbjct: 67  MDGLTAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALL 126

Query: 117 RRLKV---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR            ++       +R+    R+         L R E  +LE  MA+  + 
Sbjct: 127 RRSTYATALADTAEADEALSFADLRMDLATREVTRGTRPVELTRTEFTLLEMFMAHPRQV 186

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 187 LTREQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 238


>gi|15602297|ref|NP_245369.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720685|gb|AAK02516.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 231

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 99/225 (44%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGK- 56
            ++++D + +++         G  +     +E  ++  +      +  +  ++  L G+ 
Sbjct: 4   ILVVEDESAIREMISLFLTQQGYDI-----IEAADYQSAVKKLVEKPQLILLDWMLPGRS 58

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G + ++  +       +P+I ++     +  +   ++G DD + KP   + +LAR+ A+ 
Sbjct: 59  GIQFIQFLKKHEDTENIPVIMLTARSEEEDCITGLNTGADDYITKPFSPKILLARIEAML 118

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR  + S N  E   + +  +      Q  V  L   E ++L++LM +  K   + Q+  
Sbjct: 119 RRVYEQSQNSIEIDGLLLDQNALRVSYQKNVINLSSTEFKLLKFLMTHPEKVYTREQLLD 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G  D  VE+  V+S+I +LRK L        + + R  GY  
Sbjct: 179 CIWGN-DIYVEDRTVDSYIRRLRKSLEQYGFDRYIQTVRGAGYRF 222


>gi|327392936|dbj|BAK10358.1| phosphate regulon transcriptional regulatory protein PhoB [Pantoea
           ananatis AJ13355]
          Length = 245

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 98/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +         +E E++  + ++      D+  ++  L   
Sbjct: 21  ILVVEDEAPIREMLCFVLEQNDY-----QPIEAEDYDSAVSKLIEPWPDLILLDWMLP-- 73

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 74  GGSGIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIK 133

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+      +  E   + +         +     +   E ++L + M +  +  ++ 
Sbjct: 134 AVMRRISPMAVEDVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSRE 193

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 194 QLLNHVWGT-NVYVEDRTVDVHIRRLRKALELTGHDRMVQTVRGTGYRF 241


>gi|297172289|gb|ADI23266.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [uncultured
           actinobacterium HF0770_13M05]
          Length = 224

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D A +         + G S+    S E    + +  R D+  I+  L   G   L L 
Sbjct: 2   VEDDADISSLLRFSLENTGFSVFESPSAEAAMQILTERRTDLVIIDWMLP--GMDGLNLT 59

Query: 65  RIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + +R  +     P+I ++        +  FDSGVDD + KP   RE++ARV A+ RR   
Sbjct: 60  KTLRNRADTQKIPIIMLTARSDEADAIQGFDSGVDDYITKPFSPRELIARVNALLRRSTD 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  E+  + + +     ++ GE   L  R   +L+YLM N  + +++ Q+    +G 
Sbjct: 120 GAGSLIESNGMSLNTHNHTLQINGENLYLKPRVYGLLQYLMKNPNRILSRNQLLDGAWGR 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
               VEE  V+ +I +LRKKL        + +   +GY  D
Sbjct: 180 S-VYVEERTVDVYIVRLRKKLEPSGKSAVIKTIHGVGYVYD 219


>gi|300119508|ref|ZP_07057060.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723098|gb|EFI63988.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 233

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNSGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 227

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +          +G   E                 ++  ++  L       
Sbjct: 8   LILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVMDLMLPV--MDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP++ ++    ++  ++  D+G DD + KP    E+LAR+ A  RR+ 
Sbjct: 66  LEVARRIRKTSNVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRVT 125

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +  +GR+    G       +E  +LE L  + GK  ++ +I   ++ 
Sbjct: 126 PAITGEIRVSDLIINLEGREVYRSGRRIEFSNKEFELLELLAKSPGKVFSRFEIEEKVWP 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      NVV+ +I  LRKKL        + + R +GY +
Sbjct: 186 GYQ--GGSNVVDVYIGYLRKKLEGAGERRLIHTVRGVGYVL 224


>gi|308233471|ref|ZP_07664208.1| two component transcriptional regulator, winged helix family
           protein [Atopobium vaginae DSM 15829]
 gi|328943477|ref|ZP_08240942.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
 gi|327491446|gb|EGF23220.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
          Length = 241

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D   A    +G  +   +  + +  L+   +     I   L+       
Sbjct: 8   ILLVEDEKTIRDAVAAYLEREGYFVR--SVGDGQSALEEFEKHSFDLIILDLMLPKLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S VP+I ++    ++  +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 66  RVCRAVRETSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAHT 125

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +       + G + +   G    V+ +   L   E ++L  L    G+   + ++   +
Sbjct: 126 ESEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARFPGRVYTRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFE 229


>gi|52080824|ref|YP_079615.1| two-component response regulator YclJ [Bacillus licheniformis ATCC
           14580]
 gi|52786195|ref|YP_092024.1| hypothetical protein BLi02455 [Bacillus licheniformis ATCC 14580]
 gi|319645218|ref|ZP_07999451.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2]
 gi|52004035|gb|AAU23977.1| two-component response regulator YclJ [Bacillus licheniformis ATCC
           14580]
 gi|52348697|gb|AAU41331.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317393027|gb|EFV73821.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2]
          Length = 233

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 96/230 (41%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G      N+           + D+  ++  L       L
Sbjct: 6   ILIIEDDEAIADLLSYGLTSEGFETCTVNNGSSGMRKLDQFKPDLLLLDWMLPDC--SGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +     +P++ I+    +   +   + G DD + KP   RE++AR+  I RRL+ 
Sbjct: 64  DICKKVTESCNIPILMITAKSDITDKILGLEFGADDYITKPFDLREVVARIRTILRRLEQ 123

Query: 122 SN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++          +      I +    R  +  G    L  +E  +L  L+ +RGK   ++
Sbjct: 124 AHHVNERETEKVDEIRFKNIVIVPGERLVKKDGAAVELTPKEYDLLMTLVDHRGKVFTRS 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   I+G +D   +   V++HI +LRKKL      D + +   +GY  +
Sbjct: 184 ELLEFIWG-YDFFGDTRTVDTHIQRLRKKLD---ASDLIKTVFGIGYKFE 229


>gi|229118027|ref|ZP_04247387.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-3]
 gi|228665476|gb|EEL20958.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-3]
          Length = 230

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G    L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|223986415|ref|ZP_03636420.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
           12042]
 gi|223961611|gb|EEF66118.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
           12042]
          Length = 229

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +         ++G       S      L    + D++ ++  L        
Sbjct: 5   ILIVDDDAEIAQLVSVYLKNEGFQTTVEYSGTEALKLIRDHKFDLAVLDVMLPDC--SGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            L   IR+H   P+I ++        +     G DD + KP +  E+ ARV A  RR   
Sbjct: 63  HLCEEIRSHYNYPVIMLTAKGEDIDKITGLTIGADDYITKPFNPVEMTARVKAQLRRYMR 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K  +N  +   + +     +  + GE   L   E  IL+ L  NRGK ++   +F 
Sbjct: 123 YNSQKRDDNIIDFQGLILNCSTHECTLYGEKLNLTPTEFSILQMLCENRGKVISSQDLFE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +I+         N V  HI ++R+K+         + +   +GY I+
Sbjct: 183 SIWKEKYFESN-NTVMVHIRRIREKMHEQPRNPKFIKTVWGMGYKIE 228


>gi|55823082|ref|YP_141523.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55739067|gb|AAV62708.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
           [Streptococcus thermophilus CNRZ1066]
          Length = 235

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   F+  E  E  ++  + D+  ++  L       
Sbjct: 4   ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEA-KKPDLVILDLMLPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S  P+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR +
Sbjct: 61  LEIVKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTE 120

Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G + +  D    + +G    L  RE  +L +L  + G+ + 
Sbjct: 121 TIETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|163940441|ref|YP_001645325.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229011915|ref|ZP_04169095.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
 gi|229133482|ref|ZP_04262309.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|163862638|gb|ABY43697.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228649882|gb|EEL05890.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|228749329|gb|EEL99174.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
          Length = 224

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++    L+  + L+++  ++   I   L+  G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYIVDI--QLDGRKGLEAALEKNYDLILLDLMLPGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +         +++  + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 TEQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|189346808|ref|YP_001943337.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
 gi|189340955|gb|ACD90358.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
          Length = 222

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++     +    +      D+  ++  +   G   +
Sbjct: 3   ILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMALLNEYDLMIVDWMIP--GISGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A S VP++ ++   +L+  +   D+G +D + KP    E+LAR+    RR  
Sbjct: 61  EVCRQVRKAGSSVPILFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G + V         +     L  +E  +LE+L  N+ K   +++I   ++ +
Sbjct: 121 PESDTITAGCVTVNPVTHQVFCRNTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + +V++ +I+ LRKKL      + + + R +GY I
Sbjct: 181 H-FDSDTSVIDVYINFLRKKLDIVGCGNIIQTIRGVGYII 219


>gi|229048244|ref|ZP_04193812.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH676]
 gi|228722969|gb|EEL74346.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH676]
          Length = 230

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|163938261|ref|YP_001643145.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229009761|ref|ZP_04166983.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229131266|ref|ZP_04260170.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|163860458|gb|ABY41517.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228652204|gb|EEL08137.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228751521|gb|EEM01325.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRILEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V GE   L  RE  ILE L+ N G   +  QI+
Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|260436729|ref|ZP_05790699.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
 gi|260414603|gb|EEX07899.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
          Length = 242

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +++    +   +G  ++   +       + +   + V  I   L+  G   
Sbjct: 15  LLVVEDDDSIRETVGEVLRAEGFEVQTCADGASALNLITAETSDPVDLIVLDLMLPGLGG 74

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R +R  +   P++ IS   S    +   + G DD + KP   RE++AR  A+ RR 
Sbjct: 75  LDLCRELRRINNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRS 134

Query: 120 KVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             S   A          + +F         G    L  +E +ILE  + N  +  ++ Q+
Sbjct: 135 SQSETSAPQPHSFTHANLCLFPSECRVTRDGMDLTLSPKEYKILELFIQNPKRVWSRDQL 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              I+G+ D   +   V+ HI  LR+K+         + + R  GY  
Sbjct: 195 LEKIWGV-DFIGDTKTVDVHIRWLREKVEQEPSSPQLILTVRGFGYRF 241


>gi|297545597|ref|YP_003677899.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843372|gb|ADH61888.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 231

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G     + + + EE L+ +  ++   I   ++       
Sbjct: 5   ILIVDDEKPIVEIIKYNLEKEGYI--TYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ ++        +   + G DD + KP   RE++ARV A  RR+ +
Sbjct: 63  SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S N      +++       E   +   L  RE  +L++L+ N+G   ++  +   +
Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKDNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G ++   +   V+  I +LR+K+ +       + +KR +GY  
Sbjct: 183 WG-YEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYF 225


>gi|28210522|ref|NP_781466.1| two-component response regulator [Clostridium tetani E88]
 gi|28202959|gb|AAO35403.1| two-component response regulator [Clostridium tetani E88]
          Length = 233

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G  +    +      L    + D+  ++  +       +
Sbjct: 6   IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPN--MDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E    IR    +P+I +S        +    +G DD + KP +  E++ARV +  RR K 
Sbjct: 64  EACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKK 123

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  ++++  E   + + +   + +V  +   L  RE  ILE L  N+G   +  +I
Sbjct: 124 FNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +  ++   +    +N V  HI KLR+K+         V +   +GY ++
Sbjct: 184 YERVW-KEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVE 231


>gi|210610307|ref|ZP_03288336.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
 gi|210152537|gb|EEA83543.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  + E  L+ +   D       L+  G    
Sbjct: 4   ILIVEDEEAIADLEKDYLELSGFEVEVAN--DGETGLKKALENDYDLFILDLMLPGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICRQVRDEKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYDR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++ +  R   V GE  P   +E  +L +L ++      K ++F
Sbjct: 122 LIGSAAEENKVIEIRGLKIDTTARRVWVNGEEKPFTTKEFDLLTFLASHPNHVYTKDELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 SEIWDM-ESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRF 227


>gi|49481473|ref|YP_038587.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228929584|ref|ZP_04092602.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228935846|ref|ZP_04098658.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228948260|ref|ZP_04110543.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124101|ref|ZP_04253293.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           95/8201]
 gi|49333029|gb|AAT63675.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228659403|gb|EEL15051.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           95/8201]
 gi|228811247|gb|EEM57585.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823903|gb|EEM69723.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829971|gb|EEM75590.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 230

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|229167490|ref|ZP_04295228.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
 gi|228616052|gb|EEK73139.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
          Length = 224

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 101/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++    L+  + L+++       I   L+  G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYIVDI--QLDGRKGLEAALENSYDLILLDLMLPGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +         +++  + R    + E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 TEQKHASFLSFKDLQLQIESRTITKENEEIELTNKEFELLLMFMKNINRVLTRDILLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|328466857|gb|EGF37967.1| putative response regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 103/231 (44%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++   + + EE ++   + D   +   L+   +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVD--TAYDGEEAVKKVDKYDPDLMILDLMLPKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      ++   + G + +  D    E  G    L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  + +LR+K+ +  +    + ++R +GY +
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYV 232


>gi|294638191|ref|ZP_06716446.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
 gi|291088686|gb|EFE21247.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ +       D G  +   ++ E +  +    +    A+   L+  G   L
Sbjct: 6   ILVVEDDTLIAELLTLHLSDAGYHVT--HAAEGDRGMALIEQGGWDALILDLMLPGVDGL 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA ++  P+I IS   S    +   + G DD + KP    E++ARV A++RR +
Sbjct: 64  DICRRVRAMTRYTPIIIISARSSEPHRVLGLELGADDYLAKPFSMVELVARVKALFRRQE 123

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R   G + +    R   V      L  RE  +L +   + G+  ++ Q+
Sbjct: 124 AMGRNLMLEAGRLTHGALTLDPIARQAWVAERAIELTPREFDLLYFFARHPGQVFSRLQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 184 LDKVWG-YQHDGYEHTVNTHINRLRTKIEDDPAEPVWILTVWGAGYKF 230


>gi|229059658|ref|ZP_04197036.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|229166864|ref|ZP_04294611.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228616492|gb|EEK73570.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228719671|gb|EEL71270.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 225

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + L+      V      ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGF--QTYEAVDGLDALRKIEEVKVDMAILDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DLCYELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  V  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +L    + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLEVS 224


>gi|109896549|ref|YP_659804.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109698830|gb|ABG38750.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 239

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 97/232 (41%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + GV ++     E       S   DV  ++  L       L
Sbjct: 5   ILIVEDDLDIANLMRVNLLELGVEIDHQVDGETALHQALSNEYDVILLDVMLPN--MSGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R IR    +  +I ++   S    +   + G DD + KP   RE+ ARV +  R+  
Sbjct: 63  DICRKIRDERPMQIIIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKVH 122

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +  +    TG +R+        +  +   L   E  +L +L ++ G+  ++
Sbjct: 123 ALRQSHVPSQQPDEALNTGDLRIDQKTHQVFLAEQELVLTATEFELLHHLASHPGQVFSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +Q+  +++G +  +  E+ V SHI++LR KL  +      V +   +GY  +
Sbjct: 183 SQLLESVWG-YHHSGYEHTVNSHINRLRAKLENDATSPKIVQTVWGVGYKFN 233


>gi|47569985|ref|ZP_00240648.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47553333|gb|EAL11721.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 254

 Score =  237 bits (606), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 103/223 (46%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + +++++  + LQ      V  +   ++       
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGF--QTYDAIDGLDALQKIDEVKVDMVILDIMMPNMDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 92  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 152 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ H+++LR+K + +     + + R LGY ++ +
Sbjct: 211 YDFEGNERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLEVS 253


>gi|330504167|ref|YP_004381036.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328918453|gb|AEB59284.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 225

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 107/222 (48%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++    A   ++G  ++   + E   +   S   D++ ++  L   G   +
Sbjct: 3   LLVVEDEALLRHHLFARLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGLP--GMSGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R+     P++ ++   + Q  ++    G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRSQDKSFPILILTARGNWQDKVEGLSCGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  E G + +    +   V  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTKSTIEAGSLVLDLHRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVAKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL   LG   +++ R  GY  +
Sbjct: 180 PGDDDRDPNVIEVLVGRLRRKLEAVLGGKSIETVRGQGYMFN 221


>gi|229173313|ref|ZP_04300857.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
 gi|228610007|gb|EEK67285.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
          Length = 224

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++     +  + L+++   +   I   L+  G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDI--QFDGRKGLETALEINYDLILLDLMLPGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEH 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N+         +++  + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 IENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|228997630|ref|ZP_04157239.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
 gi|228762092|gb|EEM11029.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
          Length = 224

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G ++E                 D+  ++  L   G   +
Sbjct: 4   ILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLP--GLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRREQK 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++         +++  + R      E+  L  +E  +L   M N  + + +  +   +
Sbjct: 122 EESKPTLLLAFKDLQLHVESRTLRKNDEIIELTNKEFELLLMFMKNINRVLTRDILLEQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL      + + + R  GY +
Sbjct: 182 WG-YDAIVETNIVDVYVRYLRNKLHGVDKEEYIQTVRGAGYVM 223


>gi|325663524|ref|ZP_08151934.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087049|ref|ZP_08336123.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470423|gb|EGC73654.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330409329|gb|EGG88776.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 225

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 110/224 (49%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD + ++          G ++ E  + +E  +      + D++ I   ++      
Sbjct: 6   ILVVDDESRMRKLVKDFLTRSGYTVVEAADGMEAMDIFY--EQNDIALIILDVMMPKMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R +R HS+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR  
Sbjct: 64  WQVCREVRMHSKVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVEAILRRTN 123

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V  ++   + G I V     + ++ G    L  +E  +L Y + N+G  +++ +I + ++
Sbjct: 124 VFAADEVVDAGGISVDKAAHEVKIDGVPIDLSYKEFELLAYFIENQGIALSREKILNNVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +D   +   +++H+ KLR KL +K   + + +   +GY  + 
Sbjct: 184 N-YDYFGDARTIDTHVKKLRNKLGDKG--EYIKTIWGMGYKFEV 224


>gi|291616506|ref|YP_003519248.1| PhoB [Pantoea ananatis LMG 20103]
 gi|291151536|gb|ADD76120.1| PhoB [Pantoea ananatis LMG 20103]
          Length = 245

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 98/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +         +E E++  + ++      D+  ++  L   
Sbjct: 21  ILVVEDEAPIREMLCFVLEQNDY-----QPIEAEDYDSAISKLIEPWPDLILLDWMLP-- 73

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ 
Sbjct: 74  GGSGIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIK 133

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+      +  E   + +         +     +   E ++L + M +  +  ++ 
Sbjct: 134 AVMRRISPMAVEDVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSRE 193

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 194 QLLNHVWGT-NVYVEDRTVDVHIRRLRKALELTGHDRMVQTVRGTGYRF 241


>gi|261409756|ref|YP_003245997.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286219|gb|ACX68190.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +         ++G  +   +  E      +S    +  +   ++      ++
Sbjct: 5   LIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKLNGID 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
             R IR +S +P++ +S        +    +G DD + KP +  E+  RV  + RR    
Sbjct: 65  TCRRIRENSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRRSTQY 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  ++R     + +     +    G    L  RE  IL  L    G+  +   IF
Sbjct: 125 NVDLHQGDSDRIRIDGLDINRTTHEVTANGHAISLTAREFEILYLLARQPGRIFSAEDIF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++      V  N V  HIS LR KL  +LG+  + +   +GY I
Sbjct: 185 QQVWKEK-YYVSNNTVMVHISNLRDKLEKELGYKLIQTVWGVGYKI 229


>gi|325847051|ref|ZP_08169877.1| putative sensory transduction protein RegX3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481023|gb|EGC84068.1| putative sensory transduction protein RegX3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 219

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D   +++  +    +    ++GF        L      D+  ++  L  K    
Sbjct: 1   MIYVVEDDKAIRNLVLYALSEKDYQVKGFEDGLDIVELVRKESVDLLILDVMLPEK--DG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S +P+I ++        +   +SG DD + KP    E+++RV A+ RR +
Sbjct: 59  LEILKEIREFSSIPIIMLTARDGEYDKVMGLESGADDYITKPFSILELISRVKAVLRRSE 118

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G I +    R  +V GE   L  +E  +L   MAN G  + +      I+G
Sbjct: 119 KKDREHLNYGSIEINIKKRTVKVDGEKIDLTFKEFEMLLLFMANIGNVITREDFLLKIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL++      + + R LGY +
Sbjct: 179 -YDYEGETRTVDVHIASLRNKLKSAGEN--IKTVRNLGYKL 216


>gi|294627534|ref|ZP_06706117.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598165|gb|EFF42319.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 227

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 3/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G S +             + + D+  ++  L  +G   L+
Sbjct: 11  LIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRG--GLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +  
Sbjct: 69  ICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRHD 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            + A    +++  D     V G    L + E R+L  L A  G+  ++ Q+   +Y    
Sbjct: 129 PHGAPAPGLQIDEDTCRASVDGRTLDLTQVEFRLLRTLAAAPGRVYSREQLMGRLY-ADH 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V +  V+SH+  LR+KL +  G D V S    GY  +
Sbjct: 188 RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGYRFE 226


>gi|293401928|ref|ZP_06646068.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304586|gb|EFE45835.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 229

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +  F   E           D++ ++  +        
Sbjct: 5   ILVLDDEKEIADLVTLYLKNEGYQVHEFYDSEDALRFIKDNPVDLAMLDIMMP--KINGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR     P+I ++        +     G DD + KP +  E++ARV A  RR K 
Sbjct: 63  EICKIIREKYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYKK 122

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N      N  +   + + +D     +  +V  L   E  IL YL  NRG+ V   ++F 
Sbjct: 123 YNTTKDNVNVIDFKGLIIDNDSHQCTLYDKVLNLTPIEFSILWYLCKNRGRVVPSEELFE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSID 221
           A++         N V  HI +LR+K +        + +   +GY I+
Sbjct: 183 AVWKEK-YFDSNNTVMVHIRRLREKMMEPPRNPKFIKTVWGVGYKIE 228


>gi|189218617|ref|YP_001939258.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
 gi|189185475|gb|ACD82660.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
          Length = 268

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         ++G +++  +  +    +  +   D + ++  L   G   + 
Sbjct: 49  LVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLP--GPDGIS 106

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     +P++ +S     +  ++  +SG DD + KP    E++AR+ A+ RR   
Sbjct: 107 VLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTAG 166

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  + G + +    R+     +   L  +E  ILE LM   G+   +TQ+   ++  
Sbjct: 167 IGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN- 225

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +      N+V+ +I KLRKK+        + + R +GY I+
Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIE 266


>gi|329897279|ref|ZP_08272017.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC3088]
 gi|328921275|gb|EGG28671.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC3088]
          Length = 233

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++D          +     +++     +    R D+  ++  L   G   +E
Sbjct: 7   LVVEDEVAIRDMLRMALEIADLRCIEADNIMDAHAIIIDRRPDIVLLDWMLP--GGSGIE 64

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++      ++P+I ++   S    +   D G DD + KP   RE++AR+ A+ RR 
Sbjct: 65  LLRRLKRDKLTEEIPVIMLTAKTSEDNVIQGLDVGADDYITKPFAPRELIARIRALLRRS 124

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S+ R E G + +        + GE   +   E ++L + M++  +   ++Q+   +
Sbjct: 125 GAMPSSERIEAGELVLDMSSHRVFLAGEPLAMGPTEFKLLSFFMSHPERAYTRSQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L+N +G     + + R  GY  
Sbjct: 185 WGG-NVYVEERTVDVHIRRLRKALQNDMGDCSHFIQTVRGTGYRF 228


>gi|258541416|ref|YP_003186849.1| PhoB family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632494|dbj|BAH98469.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635551|dbj|BAI01520.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638606|dbj|BAI04568.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641660|dbj|BAI07615.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644715|dbj|BAI10663.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647770|dbj|BAI13711.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650823|dbj|BAI16757.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653814|dbj|BAI19741.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-12]
          Length = 229

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G ++      E         R D+  ++  L   G   L
Sbjct: 6   LLVVEDDPALSRLIGYNLEKQGYAVRVVGDGEAALEQVRQKRPDLLLLDWMLP--GISGL 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R   +    P++ +S       T+   D+G DD + KP     + ARV A+ RR
Sbjct: 64  EVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRR 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L  ++       + +       E  G +  L   E R+LE+ M N GK  ++ ++    +
Sbjct: 124 LPPADKTLRFDTLVMDRVSHKVERSGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHAW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                 VE   V+ HI +LR+ L      D + + R  GY++D
Sbjct: 184 ERS-SFVELRTVDVHIRRLRQTLNEGDEQDLIRTVRARGYALD 225


>gi|229009770|ref|ZP_04166991.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
 gi|228751506|gb|EEM01311.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
          Length = 266

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++   + E    L +    ++  ++  +       +
Sbjct: 35  ILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNKNNYNLVILDLMMPKV--DGI 92

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 93  EVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 152

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +          G+   L  +E  +L++  +N  +   KTQ+
Sbjct: 153 LGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQL 212

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 213 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKF 259


>gi|325663722|ref|ZP_08152126.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087242|ref|ZP_08336312.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470215|gb|EGC73448.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330408928|gb|EGG88389.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 230

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        D  ++  F + E       + + D++ ++  L   G    
Sbjct: 3   ILVVDDEKEIADVIALYLQSDQYTVYPFYTGEEALECMKTTKIDLAILDVMLP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 61  EILKKIRERYTFPVIMLTAKTEYIDKITGLTLGADDYILKPFNPLELIARVKAQLRRYTQ 120

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N           +   +++  +  +     +   L   E  +L  L  NRGK ++  ++
Sbjct: 121 YNEGTRTDSGDIIDFAGLQLNRESHECVYNEKQLTLTPIEFDLLWMLCENRGKVISSEEL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           F  ++         N V  HI  LR+K+    G  D + +   +GY ++
Sbjct: 181 FENVWKEKYYKNSNNTVMVHIRHLREKMSGPTGKSDFIKTVWGVGYKVE 229


>gi|303234314|ref|ZP_07320954.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
 gi|302494567|gb|EFL54333.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
          Length = 226

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +   +E     +    +    +  +  ++  L   G    
Sbjct: 4   ILIVEDELDLANIIKDYLVKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLP--GMNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ +S        +   + G DD + KP   RE+LARV A  RR +V
Sbjct: 62  EICQNIRIKSTIPILILSAKIDEFDKVKGLNLGADDYITKPFRPRELLARVNAQLRRSQV 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N       +   IR+++     E  G    L R E  +L +L  N  +  ++ Q++  I
Sbjct: 122 FNKENLEIIDIENIRIYTKEYKVEKNGRDLDLSRNEFELLVFLSKNPKQVFSREQLYERI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +G FD   + N V   I++LR+K+ +       + +   +GY  +
Sbjct: 182 WG-FDSYGDLNTVTVTINRLRQKIEDNPKNPKYILTVWGVGYKFE 225


>gi|302536872|ref|ZP_07289214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302445767|gb|EFL17583.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 246

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             S + ++  ++  L   G   LE
Sbjct: 22  LVVEDDRTIADAIAARLRAEGFQVQTAYDGPAAVAAAESWQPELLVLDVMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G + +    R   VQ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 TLAATAPRGATLRLGDLEIDHAQRRVRVQAEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G D + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GADRIRTVHGVGYALE 241


>gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763]
 gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719]
 gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763]
 gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719]
 gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 244

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ +    L          ++  L       +
Sbjct: 8   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPE--MDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++   +R H Q P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 66  QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 125

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 126 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 186 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 236


>gi|229098996|ref|ZP_04229931.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-29]
 gi|228684494|gb|EEL38437.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-29]
          Length = 230

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEKGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G    L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|114327579|ref|YP_744736.1| phosphate regulon transcriptional regulatory protein phoB
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315753|gb|ABI61813.1| phosphate regulon transcriptional regulatory protein phoB
           [Granulibacter bethesdensis CGDNIH1]
          Length = 249

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +           G  +E  +  +      S  + D+  ++  L   G   +E
Sbjct: 25  LIVEDEAALATMLRYNLEKQGFRVEEASDGQEALHRLSEVQPDLVLLDWMLP--GLSGIE 82

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R IR       +P+I ++     Q  +   ++G DD + KP + + + AR+ A+ RR 
Sbjct: 83  VCRQIRRKPGTRDLPIIMVTARVEDQDAVRALNTGADDYITKPFNMQALQARIRALLRRA 142

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +        I +               L   E R++E+ + +  +  ++ ++  ++
Sbjct: 143 SPVTAKGMLTFHDITMDLATHRVHRNNRPIHLGPTEFRLMEFFLQHPRRVFSREELLDSV 202

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  VE   V+ HI +LRK +  +   D V + R  GY++D
Sbjct: 203 WGT-DIHVEPRTVDVHIRRLRKAVNGEGEVDLVRTVRAAGYALD 245


>gi|238799012|ref|ZP_04642473.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC
           43969]
 gi|238717153|gb|EEQ09008.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC
           43969]
          Length = 241

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +          A   +  ++  L   G   + 
Sbjct: 17  LIVEDEPKLGQLLVDYLQAAGYRTQWITNGVEVVAAVRQAPPAIILLDLMLP--GSDGIT 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR  + 
Sbjct: 75  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCHQQ 134

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               +E+ P+ +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 135 REQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 194

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              V +  ++SHI  LR+KL +  G  P + +   +GY  +
Sbjct: 195 -RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWE 234


>gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
 gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
          Length = 237

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +   ++   + E    L +    ++  ++  +       +
Sbjct: 6   ILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLMMPKV--DGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +          G+   L  +E  +L++  +N  +   KTQI
Sbjct: 124 LGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKF 230


>gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 224

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +          +G   E                 ++  ++  L       
Sbjct: 5   LVLIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPV--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S VP++ ++   ++   ++  D+G DD + KP    E+LARV A  RR+ 
Sbjct: 63  LEVARRIRKTSNVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVT 122

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +  +GR+    G    L  +E  +LE L  + GK  ++ +I   ++ 
Sbjct: 123 PAITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVWP 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      NVV+ +I  LRKKL        + + R +GY +
Sbjct: 183 GYQ--GGSNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 221


>gi|314933669|ref|ZP_07841034.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
 gi|313653819|gb|EFS17576.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
          Length = 241

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   +  +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPE--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 63  EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +N+           E   + + +D        E   L  +E  +L YL     K   + Q
Sbjct: 123 ANSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 183 LLKDVW-HYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEV 233


>gi|315303259|ref|ZP_07873903.1| transcriptional regulatory protein SrrA [Listeria ivanovii FSL
           F6-596]
 gi|313628371|gb|EFR96860.1| transcriptional regulatory protein SrrA [Listeria ivanovii FSL
           F6-596]
          Length = 228

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  + ++    +  + +   ++  +ED       L+      +
Sbjct: 3   LLMIEDNVSVCEMIEMFFMKEEINATFVH--DGKLGYETFLKEDFDIAIIDLMLPNMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S +P+I ++   S    +   + G DD V KP     ++AR+ A+ RR   
Sbjct: 61  TICRKIREVSDMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               +   +  ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+ 
Sbjct: 121 STLAETDEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +    +E  V+ HI +LR+K+  +     + +   +GY  D
Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATET-KPFLHTIWGVGYKFD 225


>gi|226315263|ref|YP_002775159.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098213|dbj|BAH46655.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  237 bits (606), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G  +E  F+ LE  E L+     D+  ++  +       
Sbjct: 5   ILIVDDDKEIVELMAIYLSNEGYEIEKAFDGLEAMEKLE-QKSIDLVILDVMMPN--LDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR +S +P++  S   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 62  LEVTKRIRKNSTIPILMASAKTNDMDKILGLMTGADDYVAKPFNPLEVIARVKSLLRRSN 121

Query: 121 -----VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++  E GP+ +          +G    L   E  +L  L ++  +  +  +IF
Sbjct: 122 YTQASKQDHVIEAGPLIIDKQSHFVQTKEGTPIKLTALEFSVLHLLASHPNRVFSSEEIF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              + + +  V    V  HIS LR+KL     G   + +   +GY I+
Sbjct: 182 DRCWKM-ENFVSYKTVMVHISNLREKLEKATNGEKVIQTVWGVGYKIE 228


>gi|154505270|ref|ZP_02042008.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
 gi|153794468|gb|EDN76888.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
          Length = 230

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  + E  L  + +E+   I   L+  G    
Sbjct: 5   ILIVEDEESIADLERDYLELSGFQVEVAN--DGETGLNKAMKEEFDLIILDLMLPGVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R+    P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 63  EICREVRSQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLSRYER 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   +++ +  R   V GE      +E  +L +L  +      K ++F
Sbjct: 123 LIGSNVEENDVIEIRGLKIDTTARRVWVNGEERSFTTKEFDLLTFLAGHPNHVYTKEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 183 REIWDM-ESVGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRF 228


>gi|225174725|ref|ZP_03728723.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169852|gb|EEG78648.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 236

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  +V +        +G  +   +  +    +      DV  ++  L   G+  L 
Sbjct: 8   LVVDDDHIVLELVKLYGEREGFEVIVVSDGDQVLPIYDRENPDVVILDIMLP--GKDGLT 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           L R +R    +P+I ++        +   + G DD ++KP   RE++AR+ A+ RR +  
Sbjct: 66  LCRSLREIRMIPIIMLTAKGEEADRVLGLEMGADDYISKPFSPRELVARIKAVLRRTQAV 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+N + +   + + +D R   V  E   L  RE  +L +L  N  +   + ++ +A++
Sbjct: 126 EGVTNWKLKYNGLEIHADIRRVLVDREHIELTPREFDLLYHLAKNPQRVFTRDELLAAVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   ++  V+ HI +LR KL   L  + + +   +GY  
Sbjct: 186 G-YDYFGDQRTVDVHIRRLRTKL-VSLQHEYLSTVWGVGYQF 225


>gi|222147387|ref|YP_002548344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium vitis S4]
 gi|221734377|gb|ACM35340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium vitis S4]
          Length = 227

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  +E     +  E        D+  ++  L   G   +
Sbjct: 5   IAVVEDEEALSVLLRYNLESEGYEVETILRGDEAELRLQERVPDLLILDWMLP--GVSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R        P+I ++        +    +G DD V KP    E++ARV A+ RR
Sbjct: 63  ELCRRLRMRPDTERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K    ++    G I +  +      +     L   E R+LE+LM + G+  +++Q+   
Sbjct: 123 AKPEVLSSLLRCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMTSPGRVFSRSQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 183 VWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|222095607|ref|YP_002529664.1| response regulator [Bacillus cereus Q1]
 gi|221239665|gb|ACM12375.1| response regulator [Bacillus cereus Q1]
          Length = 234

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 233


>gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 230

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   V++        +G  +      +  E L+   RE    +   ++      L
Sbjct: 3   IVVVDDEQAVRESLCRSLSFNGYEVHLAQ--DGVEALEVIEREQPELVILDVMMPRMDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +    P++ ++    +   +   D+G DD + KP    E+LARV ++ RR  
Sbjct: 61  EVCRTLRGSGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S        +R+  D RD    G    L R E  +L+ LMAN  + +++  I 
Sbjct: 121 AESVGSGSQGELSFEDLRLNPDTRDVTRGGRPISLTRTEFALLQLLMANSRRVLSRASIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D     N +E +I  LR+K  ++     + + R +GY +
Sbjct: 181 EEVWG-YDFPTSGNALEVYIGYLRRKTESEGEPRLIHTVRGVGYVL 225


>gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
 gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
          Length = 236

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233


>gi|121535017|ref|ZP_01666835.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306430|gb|EAX47354.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 15/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           +++DD   +     A F  DG     + +G+ +L+         + D+  ++  L   G 
Sbjct: 7   LIVDDDVKIAALLKAYFEKDGFITYIAHDGYQALDK----IREQKPDIVVLDLMLP--GI 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R  R    +P++ ++        L   + G DD V KP   RE++ARV AI RR
Sbjct: 61  DGWEVCRRARKIGDIPILMLTARDEEADRLIGLEMGADDYVTKPFSAREVVARVRAILRR 120

Query: 119 LK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      + G + + ++        E+  +   E +IL+ L  N+G+  ++ Q+  
Sbjct: 121 SHKIAAQPEPIKVGNLLIDAERHVIIKDDEILDMTPTEFKILQLLATNKGRVFSRLQLIE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            + G +     E  ++ HI  +R+K+ N       + +   +GY  
Sbjct: 181 QVQG-YASEGYERTIDVHIKNIRRKIENNPKEPKYIITVYGVGYKF 225


>gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 233

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    S           R D+  ++  L        
Sbjct: 10  LLVVEDDPNILELLSASLRFAGFDVATAISGSAALSAAKEHRPDLVVLDIMLPD--LDGF 67

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R++R   ++ P++ ++   +    +     G DD V KP    E+ AR+ A+ RR  
Sbjct: 68  EVIRLLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRST 127

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +  R     + +  +  +    G+   L   E ++L YLM N  + ++K QI   +
Sbjct: 128 SGEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   ++N+VES+IS LR+K+ N      + + R +GY +
Sbjct: 188 WN-YDFRGDDNIVESYISYLRRKVDN-TQPRLIHTLRGVGYVL 228


>gi|77408155|ref|ZP_00784901.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77173255|gb|EAO76378.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 223

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    + L      S++  ++ E      S A  DV  ++  +        
Sbjct: 3   ILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMP--KMDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
              +++R   SQV ++ ++   +++  +   D G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTN 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +VS++  +   I +    +       +  L  +E  +LEYL  +R + +++ QI   ++
Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   E N+++  I  LR+KL N      + +KR LGY I
Sbjct: 181 D-YDYYGESNIIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221


>gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 229

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 93/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D  ++    +G   E   +    E ++    E    +   ++      L
Sbjct: 8   ILVTDDEEQMRDLLVSNLEKEGY--ETVTASNGLEAIERLKEETFHLVLLDVMMPELDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  S VP+I ++        +     G DD + KP   RE+LAR+ A  RR   
Sbjct: 66  TACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHS 125

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K      + G + +  +GR   V+G+   L R+E  +L   + N  K  ++ Q+   I
Sbjct: 126 FSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQI 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G  +       V++HI  LR KL    G   + +   +GY  + N
Sbjct: 186 WGT-EYHGNLRTVDTHIKTLRLKLGEAGG--YIQTVWGIGYKFEAN 228


>gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
 gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 225

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  +   G      ++G  ++     E           D+  ++  L        
Sbjct: 4   LLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLDKVRLGNYDLVILDIMLP--KLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S +P+I ++        +   + G DD + KP + RE+ AR+ A+ RR   
Sbjct: 62  SVCREIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALLRRATN 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + +    R    +G+   L  +E  IL  L +N GK   K ++   I
Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G FD   + N V  H+ KLR+K+ +       + +K   GY +
Sbjct: 182 WG-FDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYM 224


>gi|268610405|ref|ZP_06144132.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 224

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 104/222 (46%), Gaps = 9/222 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  L++D   +++  +    + G   +GF +          A  ++  ++  L    E  
Sbjct: 1   MIYLLEDDGGIRNFVLYALNNSGFEAKGFETPSEFYSALEGALPELVLLDRMLPE--EDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + + + +R     +++P+I ++   S    ++  D G DD + KP    E+++R+ A+ R
Sbjct: 59  MTVLKKLRNSPETAELPVIMLTALDSEADKVEGLDGGADDYIAKPFGTMELISRIKALLR 118

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R   S+ +   G + ++    +    GE   L  +E  +L YLM ++G  +++ ++   I
Sbjct: 119 RSG-SSEKLTAGELCIYPVKHEVFAAGEPVVLTLKEYDMLLYLMRHKGTVISRDELLKKI 177

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G +D + E   V+ HI  LR KL   +  D + + R +GY 
Sbjct: 178 WG-YDFSGESRTVDVHIRTLRSKLG--VCGDVIQTIRGVGYK 216


>gi|77409125|ref|ZP_00785839.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           COH1]
 gi|77172253|gb|EAO75408.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           COH1]
          Length = 225

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D A +++  +      G + +GF+S E           D+  ++  L   G+  
Sbjct: 1   MIYCVEDDADIREMMLYTLQMAGFTAQGFSSSELFWEAVQEKVPDLILLDIMLP--GDDG 58

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L +   +R   Q    P+I  +   S    +   D G DD + KP    E+++R+ A+ R
Sbjct: 59  LTILERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLR 118

Query: 118 RLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  +++A    G + +       +   E   L  +E  +L     N  +   + ++  
Sbjct: 119 RSRQVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLD 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G      E   V+ HI  LR KL        + + R +GY ++
Sbjct: 179 KVWGE-QFLGETRTVDVHIGTLRTKLGEDGY--LIATVRGVGYRLE 221


>gi|302559898|ref|ZP_07312240.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477516|gb|EFL40609.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 244

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E   +++  + L+ +A      +   +       L
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYGTEV--AVDGADALEKAAAYRPDLVVLDIQMPRMDGL 70

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IRA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 71  TAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N+      +R+    R+         L R E  +LE  MA+  + + + 
Sbjct: 131 YAAAVAGAAEENDVLTFADLRMDLATREVTRGSRQVELTRTEFTLLEMFMAHPRQVLTRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYVL 238


>gi|76788272|ref|YP_330651.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77405138|ref|ZP_00782237.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77410895|ref|ZP_00787252.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|76563329|gb|ABA45913.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77163113|gb|EAO74067.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77176281|gb|EAO79051.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
          Length = 223

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    + L      S++  ++ E      S A  DV  ++  +        
Sbjct: 3   ILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMP--KMDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
              +++R   SQV ++ ++   +++  +   D G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTN 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +VS++  +   I +    +       +  L  +E  +LEYL  +R + +++ QI   ++
Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNNNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   E N+++  I  LR+KL N      + +KR LGY I
Sbjct: 181 D-YDYDGESNIIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221


>gi|331268875|ref|YP_004395367.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125425|gb|AEB75370.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 223

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 104/226 (46%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++      F  +G  +  F      E L+     +++ +   ++       
Sbjct: 3   ILIIEDEDRMRKLLRDYFKKEGFCV--FEGENGIEGLEIFKSNNINIVILDIMIPYLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR  S+VP+I ++     +  L  ++ G DD V KP   + ++A+V A+ +R   
Sbjct: 61  KVCKNIRELSKVPIIMLTAKSEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRSII 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      + +     + ++ G+V  L  +E  +L + + N+   +++ ++   +
Sbjct: 121 DINEEKNIINYNGLEINEPSNEVKIDGKVIVLSPKEYDLLLFFVKNKDIVLSRDKLLDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD       V++HI +LR+KL+NK   D + + R  GY  + N
Sbjct: 181 WG-FDYDGGLRTVDTHIKRLREKLKNK--ADYIVTVRGKGYKFEVN 223


>gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
 gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
          Length = 237

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +   ++   + E    L +    ++  ++  +       +
Sbjct: 6   ILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMP--KIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCKKLRYKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            +    +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSSNTAQQKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FQNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|254477021|ref|ZP_05090407.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           sp. R11]
 gi|214031264|gb|EEB72099.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           sp. R11]
          Length = 229

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        DG  +    + E    +      D+  ++  +       +E
Sbjct: 9   LVVEDELAQREVLAYNLEADGFRVLRAENGEEALLIVEEDTPDIIVLDWMMPN--LSGIE 66

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +++ +    +P+I +S        +   ++G DD V KP    E++ARV    RR+
Sbjct: 67  VCRRLKSRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRRV 126

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S    R E   I + ++            L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPSTVGVRLEFDDIVLDAETHKVSRADTQLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALTQHGGSDPVRTVRGAGYAL 228


>gi|187932998|ref|YP_001885393.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187721151|gb|ACD22372.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 234

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G  +   N+      +       +  ++  L   G    
Sbjct: 6   ILIVDDEEHIIELLKFNLVNAGYKVLSSNNGIDALKIAKMENPKLILLDLMLP--GLDGF 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + ++       + +I ++        +   + G DD + KP   RE+LARV A+ RR
Sbjct: 64  DVCKEVKKDKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123

Query: 119 LK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 + NN  E+  +++  D  +  +  +   L  +E  +L+ L+ N+GK + +  + 
Sbjct: 124 TYPGADIENNSYESKGLKIDFDRHEVFINNQKVELTLKEFDLLKILIKNKGKILQRETLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 DKIWG-YEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFN 230


>gi|302529718|ref|ZP_07282060.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438613|gb|EFL10429.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 238

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL +D     +        +  ++    + E       +A  D+  ++  L   G   L
Sbjct: 14  IVLAEDDPKQAELVRRYLEHEQHTVTVAPTGEAALAEIRAAEPDLLILDVMLP--GMNGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S +P++ ++   +    L   D G DD V KP   RE++ARV  + RR   
Sbjct: 72  TVCRTIRASSDLPILMLTARSTEDDLLQGLDLGADDYVTKPYSPRELMARVRTLLRRTNA 131

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +     G + V  +  +  V G        E RILE + +   +   + Q+   ++G 
Sbjct: 132 AKDGPLTVGALTVDKEKHEVAVGGNRIETTPGEFRILEVMASRPDQVFTRAQLLEHLHG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220
           FD  + +  ++ H+  LRKK+       P    +   +GY +
Sbjct: 191 FDRYITQRAIDVHVMNLRKKIETNP-RKPAKLLTVYGVGYKL 231


>gi|218895381|ref|YP_002443792.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228906040|ref|ZP_04069931.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228963358|ref|ZP_04124521.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218542285|gb|ACK94679.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228796345|gb|EEM43790.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228853610|gb|EEM98376.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 233

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+     +V  +   ++      +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKV--LQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   ++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +  E G +++        V+GE   L  RE  ILE L  N G   +  QI+
Sbjct: 124 MNGFAVQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLTRNPGMVFSAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 EKVWNER-SFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|145589778|ref|YP_001156375.1| two component transcriptional regulator [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048184|gb|ABP34811.1| two component transcriptional regulator, winged helix family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 237

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E     +    +      ++  ++  L   G+  +
Sbjct: 5   ILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLP--GKSGV 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + +R++ +    P++ ++        +   DSG DD V KP   +E++ARV A+ RR
Sbjct: 63  QFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAMLRR 122

Query: 119 LKVSNNR--AETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +      GP+++              + +   L   E R+L++ MAN  +  ++ 
Sbjct: 123 QMPIEDTGPLTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVHSRA 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   ++G  +  +EE  V+ HI +LR  L        +++ R  GY I
Sbjct: 183 SLLDKVWG-SEVYIEERTVDVHIKRLRAALVPFDCDRYIETVRGSGYRI 230


>gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +          +G  +           L  S + D+  ++  L       +
Sbjct: 5   ILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPR--LNGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P+I I+   S+   +   D+G DD + KP    E+LAR+ A++RR+  
Sbjct: 63  EVCRRIRAAKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N        + V    R  +   E   L +RE  +L   M N    + +  +   ++G
Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE NVV+ ++  LR+KL        + + R  GY +
Sbjct: 183 -FDAEVETNVVDVYVRYLRQKLDEHDKERYIQTVRGTGYVM 222


>gi|228991507|ref|ZP_04151455.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
 gi|229008403|ref|ZP_04165865.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228752861|gb|EEM02428.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228768231|gb|EEM16846.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
          Length = 224

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G ++E                 D+  ++  L   G   +
Sbjct: 4   ILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLP--GLNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRREQK 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++         +++  + R      E+  L  +E  +L   M N  + + +  +   +
Sbjct: 122 EESKPTLLLAFKDLQLHVESRTLRKNDEIIELTNKEFELLLMFMKNINRVLTRDILLEQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL      + + + R  GY +
Sbjct: 182 WG-YDAIVETNIVDVYVRYLRNKLHGVDKEEYIQTVRGAGYVM 223


>gi|228475155|ref|ZP_04059881.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|314936205|ref|ZP_07843552.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus hominis subsp. hominis C80]
 gi|228270766|gb|EEK12168.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|313654824|gb|EFS18569.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus hominis subsp. hominis C80]
          Length = 236

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  ++     E         + ++  ++  L  K    +E
Sbjct: 6   LVVDDEQSIVTLLKYNLETAGYIVDVAYDGEEALKKVKEVKPELIVLDVMLPKK--DGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR ++
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQI 123

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +N                IR+  +  +      +  L  +E  +L YL+  +G+ + +  
Sbjct: 124 ANEVVKDDVDDEDIVIDNIRIRPEFFEVYRDDTLLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 184 MLNSVWN-YEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115]
          Length = 234

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++I+D   +          +G + E                 D+  ++  L       
Sbjct: 15  LVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV--LDG 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S  P+I ++    +Q  ++  DSG DD + KP    E+LARV A  RR+ 
Sbjct: 73  LEVARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVN 132

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +  DGR+    G    L  +E  +LE L  N GK  ++ +I   ++ 
Sbjct: 133 PAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW- 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     NVV+ +I  LR+KL        + + R +GY +
Sbjct: 192 -PEYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 231


>gi|167759612|ref|ZP_02431739.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
 gi|167662738|gb|EDS06868.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +D  S+  F + +         + D++ ++  L        
Sbjct: 3   ILVVDDEKEIADVIELYLQNDQYSVYKFYTGQEALDCIGGMKIDLAILDIMLPD--IDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 61  QILKQIREKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYTQ 120

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N          + G + +     +         L   E  IL  L  NRGK ++  ++F
Sbjct: 121 YNEGAKEEGEIIDFGGLVLNRTSHECIYNEMPLTLTPIEFDILWLLCENRGKVISSEELF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             ++         N V  HI  LR+K+    G  D + +   +GY ++
Sbjct: 181 EKVWHEKYYKNSNNTVMVHIRHLREKMNAPTGKSDFIKTVWGVGYKVE 228


>gi|22538256|ref|NP_689107.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25012116|ref|NP_736511.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76798542|ref|ZP_00780775.1| Two-component response regulator czcR [Streptococcus agalactiae
           18RS21]
 gi|77413189|ref|ZP_00789387.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22535169|gb|AAN00980.1|AE014287_20 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|24413660|emb|CAD47740.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586106|gb|EAO62631.1| Two-component response regulator czcR [Streptococcus agalactiae
           18RS21]
 gi|77160729|gb|EAO71842.1| DNA-binding response regulator [Streptococcus agalactiae 515]
          Length = 223

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    + L      S++  ++ E      S A  DV  ++  +        
Sbjct: 3   ILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMP--KMDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
              +++R   SQV ++ ++   +++  +   D G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRAN 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +VS++  +   I +    +       +  L  +E  +LEYL  +R + +++ QI   ++
Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   E N+++  I  LR+KL N      + +KR LGY I
Sbjct: 181 D-YDYYGESNIIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221


>gi|294667833|ref|ZP_06733043.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602459|gb|EFF45900.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 227

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 3/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G S +             + + D+  ++  L  +G   L+
Sbjct: 11  LIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRG--GLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +  
Sbjct: 69  ICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRHD 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            + A    +++  D     V G    L + E R+L  L A  G+  ++ Q+   +Y    
Sbjct: 129 PHGAPAPGLQIDEDACRASVDGRTLDLTQVEFRLLRTLAAAPGRVYSREQLMGRLY-ADH 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V +  V+SH+  LR+KL +  G D V S    GY  +
Sbjct: 188 RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGYRFE 226


>gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
 gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
          Length = 239

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD+  + +        +G  +      E           D+  ++  L   G    
Sbjct: 6   IMVIDDQPEILELISFTLEKEGYEVVPVEDAEKALEEIKDKEIDMFLVDIMLP--GMDGF 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R IR    +   P+I +S        +   + G DD + KP   RE+LAR+ A++RR
Sbjct: 64  EFVRNIRSQEKYKSTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRR 123

Query: 119 LKVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +++S    E          + +  D  + +++G+   L   E  +L +L  N GK  ++ 
Sbjct: 124 MQLSTQVKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRN 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 184 VLLDKLWG-YDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKF 232


>gi|254421333|ref|ZP_05035051.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188822|gb|EDX83786.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 257

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 20/237 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-----EWLQSSARE-------DVSAIE 50
           +L++D  L+++       D+G  +   ++ +         ++ S  E       D+S I 
Sbjct: 21  LLVEDEELIRETVALSLADEGFEVCVADNGQRALEMILGGIERSGAEKPQPVAPDISLII 80

Query: 51  AFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
             L+  G   L+L R++R     +P++ +S   +    +   + G DD + KP   RE++
Sbjct: 81  LDLMLPGMNGLDLCRLVRHQGIDIPILILSAKGTETDRVLGLEVGADDYLTKPFGIRELI 140

Query: 110 ARVAAIYRRLKVSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           AR  A+ RR +  +     +      I + +D     +      L  +E +ILE L++  
Sbjct: 141 ARCRALLRRCQSQDKPNEKSILRFADIALHTDECRVFLGSTEVSLSPKEFKILELLLSQP 200

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +  ++ QI   ++G +D   +   V+ HI  LR+KL    G    + + R  GY +
Sbjct: 201 KRVWSRNQIIDQVWG-YDFMGDNKTVDVHIRWLREKLEENPGQPKYLKTVRGFGYRL 256


>gi|242373720|ref|ZP_04819294.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348688|gb|EES40290.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 219

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++  N          +   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFIELELTHENYNVDIENDGRTGLDKALNKSYDLIILDLMLPN--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR + 
Sbjct: 62  EICRQIRQEYSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  D     V G    L + E  +L  L  NR   + + QI   ++G F
Sbjct: 121 QKDVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-F 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218


>gi|111223230|ref|YP_714024.1| putative response regulator in two-component regulatory system
           [Frankia alni ACN14a]
 gi|111150762|emb|CAJ62464.1| putative response regulator in two-component regulatory system
           [Frankia alni ACN14a]
          Length = 246

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D             ++G +++         W  +    D   ++  L   G    E
Sbjct: 4   LVVEDEVRTAAVLRRGLVEEGYAVDVVGDGIDAVWRATEIAYDAIVLDLMLP--GIDGFE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  +  P++ ++    +   +   D+G DD + KP    E+ AR+ A+ RR  V
Sbjct: 62  VCRRLRAGHRWAPVLMLTARVDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGAV 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +   G      GE   L  +E  +L  L+ +  + + +T I   ++  
Sbjct: 122 HRPVVLRAGAVELDPAGHRVWRGGEPVDLSAKEFALLHLLLRHPDQVLTRTYITEHVWDD 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  N+V+ ++  LR+K+        +++ R +GY +
Sbjct: 182 A-FDATSNIVDQYVRYLRRKIDLPPAPSLIETVRGVGYRL 220


>gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  +   G      ++G  ++     E           D+  ++  L        
Sbjct: 4   LLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLP--KLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S +P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 62  SVCREIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + +    R    +G+   L  +E  IL  L +N GK   K ++   I
Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G FD   + N V  H+ KLR+K+ +       + +K   GY +
Sbjct: 182 WG-FDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYM 224


>gi|294497140|ref|YP_003560840.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294347077|gb|ADE67406.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 230

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +    E L      D   +   ++      L
Sbjct: 6   ILIVEDERKIARLIQLELEHEGY--ETGMAYTGTEGLAEFQEHDWDLLLLDVMLPELSGL 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R IRA+    P+I ++   +L   +   D G +D + KP    E+ AR+    R   
Sbjct: 64  EVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPA 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +      + G + V    R+   + E   L  +E  +L Y++ N+ + ++  Q+ 
Sbjct: 124 STSPAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G FD   + N+V  +I  LRKK+        + + R +GY +
Sbjct: 184 TNVWG-FDYYGDTNIVYVYIRYLRKKIDAPFSTPYIQTVRGVGYML 228


>gi|219850126|ref|YP_002464559.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219544385|gb|ACL26123.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 245

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V+I+D   + +        +G+ +   +  E    LQ    +    +   L+      + 
Sbjct: 20  VVIEDELTIAESLRVGLTYEGMRVTVAS--EGRSALQIVEEQGADLVILDLMLPDIDGMV 77

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA S+ +P+I ++    +Q  +     G DD + KP    E+LARV AI+RR  +
Sbjct: 78  VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S      +   + +  + R+  + G    L   E  +LE  M +  +   +  + S ++G
Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F    + N+VE HIS LR+K+ +      + +   +GY++
Sbjct: 198 -FTYVGDSNIVEVHISNLREKIGDH-ERKLIRTVYGVGYTL 236


>gi|322383919|ref|ZP_08057649.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151396|gb|EFX44583.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 244

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G  +    ++  +E L      +V  +   ++       
Sbjct: 22  ILVVEDEHILREIIKDYLLNEGYQV--LEAINGKEALTLFEENEVHLVILDIMMPELDGW 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S +P+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 80  SVCRRIRKTSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYA 139

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +      N   +  I V    R  +V G+   L   E  IL YLM N+G  + + Q+ + 
Sbjct: 140 IEEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITK 199

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           I+G ++ + ++  V SHI  LR KL +K     + +    GY  + N
Sbjct: 200 IWG-YEFSGDDRTVNSHIRNLRTKLGDK--SKCIITVVRAGYKFEGN 243


>gi|318061516|ref|ZP_07980237.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|333024459|ref|ZP_08452523.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332744311|gb|EGJ74752.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 263

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 40  LVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLP--GFDGLE 97

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++AH  VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 98  VCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVERA 157

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + V    R   V+GE   L   E  +L  L       +++ Q+ 
Sbjct: 158 ALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 217

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 218 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 259


>gi|229115474|ref|ZP_04244880.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228667887|gb|EEL23323.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 228

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + L+      V  +   ++       
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGIDALRKMDEVKVDMVILDIMMPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 227


>gi|229152733|ref|ZP_04280917.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1550]
 gi|228630711|gb|EEK87356.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1550]
          Length = 230

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|261410069|ref|YP_003246310.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286532|gb|ACX68503.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 225

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 102/221 (46%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++  +     +G ++      E    L +  +  ++ ++  +  K     
Sbjct: 4   ILIADDDAHIRELLLYHLQTEGYTVFTAADGEEASALLAEEQVHLAVVDVMMPNK--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L   IR +  VP+I ++    L      F  G DD + KP   RE+L R+ A+ RR + 
Sbjct: 62  QLCEEIRRYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQM 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS ++       +     + +  G+V  LP +E  +L  L +   +  ++ ++   I+G 
Sbjct: 122 VSADKIRLNETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWGT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   ++  V+ HI +LR++  ++ G   + + R +GY ++
Sbjct: 182 -DFDGDDRTVDVHIKRLRERFADRSGDFRIRTVRGVGYKLE 221


>gi|251794820|ref|YP_003009551.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542446|gb|ACS99464.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 224

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    + E       + + D++ I+  +        
Sbjct: 4   ILVVDDDPNIRELVSLFLRREGYEVIEATNGEDALNRLEAVKPDLAVIDVMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R    +PL+ ++        +  F+ G DD V KP    E++ RV A+ +R ++
Sbjct: 62  ALCSALRESFDMPLLMLTAKGETAHKVKGFELGADDYVVKPFDPPELIVRVKALLKRYRI 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++++  E G + +          GE   LP +E  +L  L +  GK   +  +   ++G+
Sbjct: 122 ASSQVVELGGLSMNRSDFQLVANGEKILLPPKEFELLFKLASYPGKTFTREHLIEQLWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   +E  V+ HI +LR++   +     + + R LGY ++
Sbjct: 182 -NYEGDERTVDVHIKRLRERFPEEDFGFRIVTIRGLGYRLE 221


>gi|152974099|ref|YP_001373616.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022851|gb|ABS20621.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 246

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++    + +  E L+     +V  +   ++      +
Sbjct: 19  ILVVDDEKEIRDLITIYLKNEGYNI--LQAGDGAEGLEILENNEVHLVVLDIMMPKIDGI 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   ++P+I +S        +    +G DD V KP +  E++ARV +  RR   
Sbjct: 77  HMCMKVREQKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELVARVKSQLRRYMK 136

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + N  E G I++     +  V      L  RE  ILE L+ N G   +  QI+
Sbjct: 137 MSGFMIENENEIEIGDIKINVSTHEVVVADREVKLTPREFSILELLVRNSGMVFSTEQIY 196

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY ++ +
Sbjct: 197 EKVWNER-SFQSDNTVMVHIRKIREKVEENARKPRYIKTVWGVGYKVEKD 245


>gi|329936252|ref|ZP_08286045.1| two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304362|gb|EGG48242.1| two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 244

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E   +++  + L+ +A      +   +       L
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYGTEV--AVDGADALEKAAAYRPDLLVLDIQMPRMDGL 70

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IRA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 71  TAARRIRAAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +         N+      +R+    R+    G    L R E  +LE  +A+  + + + 
Sbjct: 131 YAAAVAGADEENDTLAFADLRMDLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 238


>gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635]
 gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635]
          Length = 244

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ +    L          ++  L       +
Sbjct: 8   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNYACILLDLMLPE--MDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++   +R H Q P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 66  QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 125

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 126 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 186 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 236


>gi|325662837|ref|ZP_08151406.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086560|ref|ZP_08335638.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470889|gb|EGC74118.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330410393|gb|EGG89825.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 229

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  E       + + D+  ++  L   G    
Sbjct: 4   ILIVEDEETIADLERDYLELSGFEVEVANDGETGLEKALTDQFDLVILDLMLP--GVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICREVRQKKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +N+  E   +++ +  R   V GE      +E  +L +L  +      K ++F
Sbjct: 122 LIGSNVQTNDIIEIRGLKIDTTARRVWVNGEEKAFTTKEFDLLTFLAGHPNHVYTKDELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 SEIWDM-ESIGDIATVTVHIKKIREKIEYDTSKPQYIETIWGVGYRF 227


>gi|148657588|ref|YP_001277793.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148569698|gb|ABQ91843.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 236

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G  +          ++    + D+  ++  +   G    
Sbjct: 4   ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMG--GY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R     S+ P+I ++        +   + G DD V KP + RE++AR+ A+ RR + 
Sbjct: 62  EFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +      I +   GR   V G    L   E  IL  LMA  G+  ++  +   + 
Sbjct: 122 TPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVS 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G       E  ++ HI  LR K+  +      +++   +GY  
Sbjct: 182 GDA-FEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRF 223


>gi|256786760|ref|ZP_05525191.1| response regulator [Streptomyces lividans TK24]
 gi|289770653|ref|ZP_06530031.1| response regulator [Streptomyces lividans TK24]
 gi|289700852|gb|EFD68281.1| response regulator [Streptomyces lividans TK24]
          Length = 280

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +         G  ++            +  R D+  ++  L   G   L
Sbjct: 55  ILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLP--GMDGL 112

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RRL 119
           E+ R +R    VP+I ++        +   + G DD V KP   RE++ RV ++    R 
Sbjct: 113 EVCRRLRGQGPVPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVLRRTRP 172

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + V    R     G    L  RE  +L + + + G+  A+ ++   ++G
Sbjct: 173 APAPRPPSAAGLTVDPAARRATKDGTELALTLREFDLLVFFLRHPGRAFAREELMREVWG 232

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
              +  + + V  H+ +LR K+ +       + +   +GY  D
Sbjct: 233 W--DFGDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFD 273


>gi|89893944|ref|YP_517431.1| hypothetical protein DSY1198 [Desulfitobacterium hafniense Y51]
 gi|219668318|ref|YP_002458753.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333392|dbj|BAE82987.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538578|gb|ACL20317.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G              L    + D+  ++  +        
Sbjct: 4   LLIADDNKQITSILEEYAKKEGYQPHIAWDGCAALELFQQLQPDLVLLDVMMPKV--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I I+        +   D G DD + KP    E++AR+ AI RR+  
Sbjct: 62  EVCREIRKTSNVPIIMITARGEDFERIMGLDIGADDYIVKPFSPGEVMARIRAILRRISQ 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++           + +  D     +      L ++E  IL  L  N  +  ++  + +++
Sbjct: 122 NDEEKKQILSYANLMINLDDYLVTIDQCPVSLTKKEIEILWTLATNHNRVFSRDNLLNSV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +G +D   +   V+SHI +LR KL +       + +   +GY  
Sbjct: 182 WG-YDYFGDIRTVDSHIKRLRSKLDSFPHEQWEIKTIWGVGYKF 224


>gi|311029174|ref|ZP_07707264.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 225

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G ++    S +  E L  + +ED   I   L+  G   +E
Sbjct: 5   LIIEDEKNLARFIELELQYEGFNV--ATSYDGREGLDLALKEDWDIILLDLMLPGLSGME 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R IRA  + P+I ++   S+   +   DSG DD ++KP    E+LAR+ A++RR++  
Sbjct: 63  VCRRIRAAKETPIIMLTARDSVMDKVSGLDSGADDYMSKPFAIEELLARIRALFRRMEGK 122

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N      ++V  D R      E   L +RE  +L   M N  + + +  +   ++
Sbjct: 123 KEEAHNILSFRELKVDLDARTVTRMEEQIELTKREFDLLVVFMTNINRVLTRELLLDKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            L   A E NVV+ ++  LR K+        + + R  GY +
Sbjct: 183 ELGSYA-ETNVVDVYVRYLRNKIDKPSEESYIQTVRGTGYVM 223


>gi|308070894|ref|YP_003872499.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305860173|gb|ADM71961.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 226

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D       ++G  +    + + EE L +     +  +   ++      +
Sbjct: 4   ILVVDDDSEIRDVIHVYLRNEGYHV--IEAADGEEALDAIKTTSIQLVILDVMMPRMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  S  P+I +S        ++   +G DD + KP +  E+LARV A  RR   
Sbjct: 62  RACLKIREISNTPIIMLSAKEEDIDKINGLTTGADDYMIKPFNPLELLARVKAQLRRQAL 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N+      + +       +++G    L   E  IL  L ++ G+  +   I+  
Sbjct: 122 IGKEEFNSLIIIKDLSIDKSKHSVKLKGNEISLTPLEFAILVLLASHPGQVFSSEHIYEN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           ++        +N V  HI  LR+KL         + +   +GY I+
Sbjct: 182 VWKAP-YGFSDNTVMVHIRNLREKLEQFPRDPLYIKTVWGVGYKIE 226


>gi|228907707|ref|ZP_04071563.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228851940|gb|EEM96738.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + LQ      V  +   ++       
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVISGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEVS 227


>gi|312864518|ref|ZP_07724749.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
 gi|311099645|gb|EFQ57858.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
          Length = 235

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 105/230 (45%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +    + + +E L+    E+   I    +    + LE
Sbjct: 5   LVVDDEKPISDIIKFNLIKEGYEV--VTAFDGKEALKQFEDENPDLIILDWMLPELEGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR  S VP+I +S   S    +   + G DD V KP  +RE+LAR+ A  RR +  
Sbjct: 63  VAKEIRKSSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTENI 122

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     S++    G +++  D    + +GE   L  RE  +L +L  + G+ + + 
Sbjct: 123 ETAVAEENDTSDSELTIGDLQIIPDAFVAKKRGEELELTHREFELLHHLATHIGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +
Sbjct: 183 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|70731816|ref|YP_261558.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5]
 gi|68346115|gb|AAY93721.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5]
          Length = 225

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  +E   + E   +       D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLQTRLTDSGHVVESVANAEEALYQTEQFNHDLAVIDLGLPGMG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRNRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELDARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIIAGPLLLDLNRKQASLDEQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL    GF P+D+ R LGY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEGPSGFKPIDTVRGLGYLFN 221


>gi|257870403|ref|ZP_05650056.1| response regulator [Enterococcus gallinarum EG2]
 gi|257804567|gb|EEV33389.1| response regulator [Enterococcus gallinarum EG2]
          Length = 237

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 104/236 (44%), Gaps = 22/236 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   V +     F ++G       +G   LE   + ++  + D+  ++  L    
Sbjct: 3   ILMIEDNESVSEMMQMFFLNEGWDATFKYDGKEGLEA--FAETPEKWDMITLDLNLPT-- 58

Query: 58  EKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              + + R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++
Sbjct: 59  MDGMIVAREIRKISNTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALH 118

Query: 117 RRLKVSNNR----------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
           RR +++               T   ++ +  R+  + G++   L  +E  +L  L     
Sbjct: 119 RRSEIAEKASSETSDTTFDIVTDHFKMNTKTREAYLNGKLIDGLTPKEFDLLYTLAKKPR 178

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 179 QVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 232


>gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 234

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  +   FN  E  E L  + + D+  ++  L       
Sbjct: 4   ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIE-LFEAEKPDIIILDLMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR  S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR +
Sbjct: 61  LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTE 120

Query: 121 VSN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +               +   + +  D    +  GE   L  RE  +L +L ++ G+ + +
Sbjct: 121 LVAVDNQEEDTKLQSLQIRDLEILPDAYVAKKYGEELDLTHREFELLHHLASHLGQVITR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             +   ++G +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|302530364|ref|ZP_07282706.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439259|gb|EFL11075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 233

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+D         G +++            +    D+  ++  +   G   LE
Sbjct: 9   LVVDDDETVRDVVRRYLETAGFTVDLAGDGTAALAQFAERVPDLVVLDVMMP--GLNGLE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  SQVP++ ++     +  +     G DD V KP   +E+  RVA++ RR ++ 
Sbjct: 67  VCRRLRQTSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELTLRVASVLRRARMP 126

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                T     G +R+    R   + G   PL  RE  +L + +++ G   ++  +   +
Sbjct: 127 RPEPPTAELVDGNLRLQMTARQATLDGAALPLTTREFDLLAFFLSHPGVAFSRADLLEKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +G   +  +++ V  H+ +LR+K+ R+      V +   +GY  D
Sbjct: 187 WGW--DFGDQSTVTVHVRRLREKIERDPAKPVRVATVWGVGYRYD 229


>gi|160941449|ref|ZP_02088785.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435659|gb|EDP13426.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
           BAA-613]
          Length = 229

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  N  +    L  + +ED   +   L+  G    
Sbjct: 4   ILIVEDEESIAELEKDYLELSGFEVEIEN--DGSSGLDKALKEDYDLLILDLMLPGTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKRVREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +N   E   +++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGQPANELIEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
 gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
          Length = 236

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +           G  +           L  S + D+  ++  L       +
Sbjct: 4   ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 62  EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                 E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  +
Sbjct: 122 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 182 RDQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|294627904|ref|ZP_06706483.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666844|ref|ZP_06732076.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292597818|gb|EFF41976.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603361|gb|EFF46780.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 229

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHAGDARAAQTAIADRVPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R  R      ++P+I ++        +   ++GVDD V KP   RE+LAR+ A+ RR
Sbjct: 63  DLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +     G +R+              P+   E R+L + M +  +   +TQ+   
Sbjct: 123 TREDDEDGSVAVGKLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGS-VYVEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225


>gi|291548048|emb|CBL21156.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 226

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 105/224 (46%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD + ++             +    + + EE +    +E D++ +   ++      
Sbjct: 6   ILVVDDESRMRKLVKDFLTKKNFQV--LEAGDGEEAMDIFYKEKDIALLILDVMMPKMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR +S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR  
Sbjct: 64  WEVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTG 123

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            SN       G I +        V  +   L  +E  +L Y + N G  +++ +I ++++
Sbjct: 124 QSNPDEILSAGGIVIDKAAHQATVDDKPMDLSFKEFELLTYFLENEGIALSREKILNSVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +D   +   +++H+ KLR K+ +K   + + +   +GY  + 
Sbjct: 184 N-YDYFGDARTIDTHVKKLRSKMGDKG--EYIKTVWGMGYKFEV 224


>gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
 gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G   E   + +    L+   +   S I   ++      +
Sbjct: 6   ILIVEDEANIARVIELELEHEGYETEI--AADGLSALEQIEQGGWSLILLDVMLPRLSGM 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R IR      P+I ++   ++   +   D G +D V KP    E+LAR+ A  R   
Sbjct: 64  EVLRRIRKEGNTTPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLRTQL 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +         + V    R+ +       L  RE  +L YL+ +  + + + QI 
Sbjct: 124 STSGTHLDEGELTLADLYVNERTREIKRGETTIELTPREFDLLVYLLRHPEQVMTREQIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G FD   + NVV+ +I  +R+KL        + + R +GY +
Sbjct: 184 EHVWG-FDYFGDTNVVDVYIRYMRQKLDKPFDAPLIHTVRGVGYVM 228


>gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae]
          Length = 253

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   V++        +G S+E  N  +  E L+  AR+   A+   ++      L
Sbjct: 28  ILAVDDDRAVRESLRRSLSFNGYSVELAN--DGVEALEMVARDRPDALVLDVMMPRLDGL 85

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 86  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK 145

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 146 PDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEE 205

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 206 VWG-FDFPTSGNALEVYVGYLRRKTEADGESRLIHTVRGVGYVL 248


>gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL103PA1]
          Length = 226

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++    +   +G  +    +    + L+  +R     +   L+  G    E
Sbjct: 5   LIIEDEESYREATAFMLRKEGFEVN--TAANGADGLEIYSRNGADIVLLDLMMPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R    V +I ++   S    +   + G DD V KP  HRE++AR+ A+ RR    
Sbjct: 63  VCRQLRQRGNVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGSPE 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++VS +  E   +R+  +  +  V+G V  L  +E  +LE L+ N G+ + +  +   ++
Sbjct: 123 VEVSPDVLEESGVRMDVERHEVSVEGTVVRLALKEFDLLEVLLRNAGRVMTRASLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G  D   +   ++ HI +LR K+ +       + + R LGY  
Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEDDPSRPVRITTVRGLGYKF 224


>gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C101]
 gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus M809]
 gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C101]
 gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus M809]
          Length = 247

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ +    L          ++  L       +
Sbjct: 11  ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPE--MDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++   +R H Q P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 69  QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 128

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +  +   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 129 TTVEQSEPHARDVIKFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 189 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 239


>gi|218896944|ref|YP_002445355.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218544709|gb|ACK97103.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 225

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + L+      V  +   ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEVS 224


>gi|158338366|ref|YP_001519543.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308607|gb|ABW30224.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 235

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 103/234 (44%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLE----FEEWLQSSAREDVSAIEAFL 53
            +L++D   +++        +G  +    +G  +L+    F+   Q ++  D+  ++  L
Sbjct: 4   ILLVEDEENIRETIAPALQSEGYRVITAADGQTALDVIQLFKSRSQQASTLDLIILDIML 63

Query: 54  IGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
              G   ++L R IR   S VP++ +S   +    +   + G DD + KP   RE++AR 
Sbjct: 64  P--GINGIDLCRFIRREGSTVPVLMLSAKDTEADRVVGLEVGADDYLTKPFGMRELIARC 121

Query: 113 AAIYRRLKVSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            A+ RR +++N            I +  D     V+ E   L  +E RILE  M+   + 
Sbjct: 122 RALLRRQRLNNTDPQGTLLTCREISLHPDECRVMVRDEEVNLSPKEFRILELFMSYPRRV 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             + QI   I+G  D   +   V+ HI  LR+K+  +    D + + R  GY  
Sbjct: 182 WPREQILEKIWGP-DYIGDSKTVDVHIRWLREKIELDPSNPDYLVTIRGFGYRF 234


>gi|21230432|ref|NP_636349.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769574|ref|YP_244336.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992783|ref|YP_001904793.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21111993|gb|AAM40273.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574906|gb|AAY50316.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734543|emb|CAP52753.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 229

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R  R  S   ++P+I ++        +   ++GVDD V KP   RE+LAR+ A+ RR
Sbjct: 63  DLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +     G +R+              P+   E R+L + M +  +   +TQ+   
Sbjct: 123 TREDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGS-VYVEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225


>gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 229

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       + +S R D   ++  +       L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALEMIASDRPDALVLDVMMPR--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +  AE        + +    R+         L R E  +LE L+AN  + + +++I  
Sbjct: 121 PDDEDAESVAMKFSDLTLDPVTREVTRGQRQISLTRTEFALLEMLIANPRRVLTRSRILE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 181 EVWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 224


>gi|323483423|ref|ZP_08088811.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
           WAL-14163]
 gi|323691077|ref|ZP_08105359.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
 gi|323403277|gb|EGA95587.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
           WAL-14163]
 gi|323504863|gb|EGB20643.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
          Length = 229

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  N+ E    L+    ED   +   L+  G    
Sbjct: 4   ILIVEDEESIAELEKDYLELSGFEVEMENNGEA--GLKRGLEEDFDLLILDLMLPGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKKVREVKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++    R   + GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGTPENEIIEIRGLKIDKTARRVYINGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 SKIWDM-ESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|218234694|ref|YP_002369334.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228923280|ref|ZP_04086569.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228954807|ref|ZP_04116827.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229072041|ref|ZP_04205250.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           F65185]
 gi|229180856|ref|ZP_04308192.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           172560W]
 gi|229192737|ref|ZP_04319696.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 10876]
 gi|218162651|gb|ACK62643.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228590827|gb|EEK48687.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 10876]
 gi|228602619|gb|EEK60104.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           172560W]
 gi|228710975|gb|EEL62941.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           F65185]
 gi|228804796|gb|EEM51395.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228836374|gb|EEM81726.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 230

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +         + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|323465648|gb|ADX69335.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus helveticus H10]
          Length = 238

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 98/231 (42%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L  K    L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      ++   + G + +  D    E  G    L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  + +LR+K+ +  +    + ++R +GY +
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYV 232


>gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
 gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
          Length = 237

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L +    ++  ++  +       +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMP--KIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCKKLRDKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            +    +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FQNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|229160972|ref|ZP_04288961.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228622540|gb|EEK79377.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + L+      V  +   ++       
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGLDALRKIDEVKVDMVILDIMMPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTTGEQAVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 227


>gi|228990586|ref|ZP_04150551.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
           DSM 12442]
 gi|228769112|gb|EEM17710.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
           DSM 12442]
          Length = 247

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 97/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  +++  ++ +    L+ + + D   I   ++  G+  +
Sbjct: 16  ILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTA--LEKALQNDYDLILLDIMMPGKDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 74  EVCKGIREKKATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 133

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   ++ +      + + +D       G+   L  +E  +L +L     K   + Q
Sbjct: 134 TTFFTQDTITKDIIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  K       + +   +GY  + 
Sbjct: 194 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSADAAKMIVTVWGVGYKFEV 244


>gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
 gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
          Length = 237

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   ++  EE LQ   + + + +   L+      +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVD--TAVNGEEALQLFNQNNYNLVILDLMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNTTAQEKTILAFKGLTIDLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  N      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGYKF 230


>gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 239

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +           L    R D+  ++  L        
Sbjct: 12  LLVVDDEPSIRELLATSLRFAGFEVASAGDGAEALKLAEDFRPDLVVLDVMLPDV--DGF 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   + VP++ ++        +     G DD V KP    E++AR+ A+ RR  
Sbjct: 70  TVTRKLRERGRAVPVLFLTARDDTADKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTG 129

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +     R     + +  D  +    G    L   E ++L YLM N  + ++K QI   
Sbjct: 130 GVDGPDTGRLVFHDLELEEDSHEVRRAGREVELSPTEFKLLRYLMLNPNRVLSKAQILDH 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   E  +VES+IS LR+KL  +     + +KR +GY +
Sbjct: 190 VWD-YDFNGEAGIVESYISYLRRKLDTEGLEPLIHTKRGVGYVL 232


>gi|153854770|ref|ZP_01996004.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
 gi|149752677|gb|EDM62608.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +D   +  F + +      +S + D++ ++  L        
Sbjct: 7   ILVVDDEKEIADVVELYLQNDQYKVFKFYNGQDALDCINSTKIDLAILDIMLPD--IDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + IR     P+I ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 65  QILKQIRQKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRCTQ 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K   +  + G + +     +         L   E  IL  L  NRGK ++  ++F
Sbjct: 125 YNEGTKEEGDVLDFGGLLLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEELF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             ++         N V  HI  LR+K+    G  D + +   +GY ++
Sbjct: 185 EKVWHEKYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVE 232


>gi|156741162|ref|YP_001431291.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232490|gb|ABU57273.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 229

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A ++    A     G  +   +S      L      D+  ++  L   G   +
Sbjct: 5   ILIIEDEASIRTVARAYLEQAGFRVLLADSGPEGVELARHECPDLVILDLNLP--GMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S V ++ ++        +     G DD V KP   RE++ARV AI RR + 
Sbjct: 63  EVAARLRQDSDVFIVMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARVEAILRRRRS 122

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    N+      +++  D R+  V  +   L   E  +L  L    G+ +++ QI   +
Sbjct: 123 TTPAVNSTLRFAHMQIDPDRREVTVGDQTIDLTTTEFDVLLALARRHGRVLSREQILDLV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D    + VV+ ++ ++R+KL    G   + + R +GY  
Sbjct: 183 WGN-DFYGTDRVVDVYVGQVRRKLEAVAGVSLIQTVRGVGYKF 224


>gi|228900580|ref|ZP_04064802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228859063|gb|EEN03501.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + L+      V  +   ++       
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEVS 233


>gi|30264605|ref|NP_846982.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530074|ref|YP_021423.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187428|ref|YP_030680.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65321903|ref|ZP_00394862.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165871505|ref|ZP_02216152.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635564|ref|ZP_02393876.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641577|ref|ZP_02399824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688250|ref|ZP_02879460.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708682|ref|ZP_02899120.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653111|ref|ZP_02935398.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566979|ref|ZP_03019895.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227817319|ref|YP_002817328.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229602420|ref|YP_002868816.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686972|ref|ZP_05150830.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724536|ref|ZP_05186319.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736642|ref|ZP_05194348.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741680|ref|ZP_05199367.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754723|ref|ZP_05206758.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757555|ref|ZP_05209582.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259263|gb|AAP28468.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505222|gb|AAT33898.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181355|gb|AAT56731.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712802|gb|EDR18332.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510462|gb|EDR85861.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528984|gb|EDR91739.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126362|gb|EDS95251.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667756|gb|EDT18509.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081635|gb|EDT66706.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561970|gb|EDV15939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227007249|gb|ACP16992.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229266828|gb|ACQ48465.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 230

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  + EE + +  +     I   ++      L
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIAS--DGEEGVDTYLKGSFDLIILDIMMPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|228971998|ref|ZP_04132616.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978608|ref|ZP_04138981.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228781104|gb|EEM29309.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228787712|gb|EEM35673.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 228

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + L+      V  +   ++       
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVMLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEVS 227


>gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 232

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIVDDEAEIADLIEIHLEKEGYHV--VKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  + +  E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAGNKSALEVGGVIIDPEQRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 235

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 92/231 (39%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +        G +G S +          L  +   D   ++  L       +
Sbjct: 5   ILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQ--LDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA   + P++ +S        +   + G DD + KP   RE+LARV AI RR  
Sbjct: 63  EVCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAILRRTS 122

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                 +           G + V+ D  +      +  L  +E  +L YLM +    + +
Sbjct: 123 KEQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++   I+G +D   E  +V+ HI KLR K+ +       + + R  GY  
Sbjct: 183 ERLLERIWG-YDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKF 232


>gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 238

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +           L +    D+  ++  L        
Sbjct: 9   LLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLAAEVEPDLLVLDVMLPD--MDGF 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   Q +P++ ++   S+   +     G DD V KP    E++AR+ AI RR  
Sbjct: 67  TITRRLRERDQHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRRSH 126

Query: 121 VSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +            + +  D  +    G V  +   E  +L YLM N  + ++K QI  
Sbjct: 127 AEDQADEDRVLTFEDLTLNEDTYEVSRAGRVIEVSPTEFNLLRYLMQNPHRVLSKAQILD 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   E  +VES+IS LR+K+  +     + +KR +GY +
Sbjct: 187 HVWD-YDFRGEMGIVESYISYLRRKIDTEGLPPLIHTKRGVGYVL 230


>gi|30022615|ref|NP_834246.1| two-component response regulator ycbL [Bacillus cereus ATCC 14579]
 gi|229112000|ref|ZP_04241543.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-15]
 gi|229129822|ref|ZP_04258788.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-Cer4]
 gi|296505012|ref|YP_003666712.1| two-component response regulator ycbL [Bacillus thuringiensis
           BMB171]
 gi|29898173|gb|AAP11447.1| Two-component response regulator ycbL [Bacillus cereus ATCC 14579]
 gi|228653513|gb|EEL09385.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-Cer4]
 gi|228671323|gb|EEL26624.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-15]
 gi|296326064|gb|ADH08992.1| two-component response regulator ycbL [Bacillus thuringiensis
           BMB171]
          Length = 230

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|119485204|ref|ZP_01619589.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119457432|gb|EAW38557.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 237

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G S E             + + D+  ++  L   G   L
Sbjct: 3   ILIVEDDGEIAQLIQQTLENEGFSCETARDGWGALEWFQTQQPDLIVLDLMLP--GLDGL 60

Query: 62  ELPRIIRAHSQV--P-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   IR    V  P ++ ++        +    +G DD + KP   RE++AR+ A+ RR
Sbjct: 61  EVCARIRQQPGVKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPRELVARIRALLRR 120

Query: 119 L---KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAK 170
                  +    T    V  D      Q      E   L   E  +L  L++  G+   +
Sbjct: 121 SLRHGGQSQVYRTPHFTVDLDQHLAYRQLDPQTSEPLDLSPLEFNLLVTLVSYPGRVWNR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           TQ+   ++G  D   +E VV++HI++LRKK+  +      + +    GY  +
Sbjct: 181 TQLIDKLWG-DDFFGDERVVDTHIARLRKKIEPDPTHPQFIKTVVGTGYKFE 231


>gi|325922699|ref|ZP_08184439.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas gardneri ATCC 19865]
 gi|325546816|gb|EGD17930.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas gardneri ATCC 19865]
          Length = 229

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R  R  S   ++P+I ++        +   ++GVDD V KP   RE+LAR+ A+ RR
Sbjct: 63  DLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +     G +R+              P+   E R+L + M +  +   +TQ+   
Sbjct: 123 TREDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGS-VYVEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225


>gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 238

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   +++ E  LQ   + + S +   L+      +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVD--TAIDGEVALQLFNQNNYSLVILDLMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFFV 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++ ++N G+   KTQ+
Sbjct: 124 LGSNISVQEQTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFISNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKF 230


>gi|126736258|ref|ZP_01752000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. CCS2]
 gi|126714079|gb|EBA10948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. CCS2]
          Length = 228

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A  ++        +G  +    + +           DV  ++  +       +E
Sbjct: 8   LIVEDEAAQREVLAYNLEAEGFRVTRAENGDEGLLCVEENAPDVIVLDWMMPN--LSGIE 65

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++       +P+I +S        +   ++G DD V KP    E++ARV    RR+
Sbjct: 66  VCRRLKIKPETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRV 125

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +          I + ++            L   E R+L   M   G+  ++  +   +
Sbjct: 126 RPATVGQVLTYEDIVLDAETYRVTRDDNPLKLGPTEFRLLSTFMEKPGRVWSRDMLLDRV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ H+ +LRK L    G DPV + R  GY++
Sbjct: 186 WGR-DIYVDTRTVDVHVGRLRKVLTQHGGSDPVRTVRGAGYAL 227


>gi|258514364|ref|YP_003190586.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778069|gb|ACV61963.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 235

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +           L  S + D+  ++  L  +    L 
Sbjct: 5   LVVDDEQNIIEIIKFNLEREGYQVITARDGTTALQLARSEKPDLIILDIMLPEQ--DGLA 62

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R+++   +    P+I +S        +   + G DD V KP   RE++ARV A  RR 
Sbjct: 63  VCRLLQQEQKTRGIPIIMVSARGDELDKILGLEMGADDYVTKPFSPRELVARVKARLRRS 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   K   N    G + +  D    E+ G    L  +E  ++ +L    GK  ++ 
Sbjct: 123 EEVETTPEKPVENTLVRGNLLIDQDRYMIELGGVKQYLTPKEFELIRFLARQPGKVFSRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +   I+G +D   +   V+ HI  +R+KL         +++ R +GY  
Sbjct: 183 YLLEQIWG-YDFVGDSRTVDVHIRHIRQKLEGMDASQQYIETVRGVGYRF 231


>gi|147678005|ref|YP_001212220.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274102|dbj|BAF59851.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 233

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 9/228 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           + + +DD A + +        +G  +    +      +    + D+  ++  L    G  
Sbjct: 3   LILAVDDEANILELLKFNLSKEGFQVISATNGPDAVKIAREKKPDLIILDVMLPEMDGYD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           VL+  +  R  +  P+I +S        +   + G DD + KP   RE++ARV A  RR 
Sbjct: 63  VLQKLKADRETAVTPVIILSAKTEEVDKVLGLELGADDYITKPFSPREVVARVKARLRRK 122

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +      G + +  +  +  + G+   L  +E  +L  L  N G+   +  +
Sbjct: 123 SAPPAKQEARKEIRIGSLVIRPEKYEAVLDGKKLELTPKEFELLHLLADNPGRVFTRDIL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              I+G +D A E   V+ HI  LR+K+  +      +++ R +GY  
Sbjct: 183 LEKIWG-YDHARETRTVDVHIRYLRQKIEKDPAKPKYIETVRSVGYRF 229


>gi|21283366|ref|NP_646454.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486519|ref|YP_043740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297207594|ref|ZP_06924029.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911675|ref|ZP_07129119.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204806|dbj|BAB95502.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49244962|emb|CAG43423.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296887611|gb|EFH26509.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300887096|gb|EFK82297.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
          Length = 234

 Score =  236 bits (604), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +      +       S + D+  ++  L  K    ++
Sbjct: 6   LVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKK--DGID 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R +   VP++ ++        +   + G DD + KP   RE++ARV AI RR + 
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E       G IR+  D  +     E+  L  +E  +L YL+  +G+ + +  + +
Sbjct: 124 VKEVEEVDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++  ++ A +  +V+ HIS LR KL +       + + R LGY ++
Sbjct: 184 TVWN-YEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229


>gi|329923464|ref|ZP_08278946.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
 gi|328941356|gb|EGG37650.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
          Length = 231

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +         ++G  +   +  E      +S    +  +   ++      ++
Sbjct: 5   LIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKLNGID 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
             R IR  S +P++ +S        +    +G DD + KP +  E+  RV  + RR    
Sbjct: 65  TCRRIRETSAIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRRSTQY 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  ++R     + +     +    G    L  RE  IL  L    G+  +   IF
Sbjct: 125 NVDLHQGDSDRIRIDGLDINRTTHEVTANGHAISLTAREFEILYLLARQPGRIFSAEDIF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++      V  N V  HIS LR KL  +LG+  + +   +GY I
Sbjct: 185 QQVWKEK-YYVSNNTVMVHISNLRDKLEKELGYKLIQTVWGVGYKI 229


>gi|294630116|ref|ZP_06708676.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833449|gb|EFF91798.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 246

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E   +++  + L+ +A      +   +       L
Sbjct: 15  ILIVDDEPAVREALQRSLAFEGYDTEV--AVDGADALEKAAAYRPDLVVLDIQMPRMDGL 72

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IR      P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 73  TAARRIRGTGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       +    G +R+    R+    G    L R E  +LE  MA+  + + + 
Sbjct: 133 YAAAVAGAADEGDVLAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFMAHPRQVLTRE 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 193 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 240


>gi|329296532|ref|ZP_08253868.1| winged helix family two component transcriptional regulator
           [Plautia stali symbiont]
          Length = 229

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +          +           D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAIGKLIEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPVMMLTALGEEEDRVRGLELGADDYITKPFSPKELMARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +         +     +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEVSGHDRMVQTVRGTGYRF 225


>gi|163939801|ref|YP_001644685.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229132829|ref|ZP_04261674.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|163861998|gb|ABY43057.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228650656|gb|EEL06646.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + L+      V      ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGF--QTYEAVDGLDALRKIEEVKVEMAIIDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DLCYELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  V  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +L    + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLEVS 224


>gi|218132752|ref|ZP_03461556.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992478|gb|EEC58481.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
           43243]
          Length = 238

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +         G  +      E    L  S   ++  ++  L   G    E
Sbjct: 14  LIVEDEESIAELEKDYLELSGFEVTVAKDGESGLNLALSQNFNMIILDLMLP--GVDGFE 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R     P+I +S        +     G DD + KP    E++ARV A   R    
Sbjct: 72  ICRQVREQKNTPIIIVSARKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYQSL 131

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +N+  E   I++    R   V GE      +E  +L +L  N      K ++F 
Sbjct: 132 TSGARSNNDIIEIRGIKIDKTARRVFVNGEEKAFTTKEFDLLTFLAQNPNHVYTKDELFK 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 192 EIWDM-ESIGDIATVTVHIKKIREKIEADTSNPQYIETIWGVGYRF 236


>gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
 gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
          Length = 225

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 114/226 (50%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD + ++         D +  EG+N LE E+ +++       +D+S +   ++   
Sbjct: 6   ILVVDDESRMRK-----LVRDFLVREGYNVLEAEDGVEAMDIFYEEKDISLLILDVMMPR 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               ++ R IR  S+VP+I ++     +  L  FD GVD+ ++KP   + ++ARV AI R
Sbjct: 61  MDGWQVCREIRESSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAILR 120

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   S+  +  E G I +       ++ G+   L  +E  +L Y + NRG  +++ +I +
Sbjct: 121 RTLGSDAGDVMEAGGITIDKAAHIVKIDGKPIELSYKEFELLTYFVENRGIALSREKILN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  +D   +   +++H+ KLR KL +K   + + +   +GY  D
Sbjct: 181 NVWN-YDYFGDARTIDTHVKKLRSKLGDKG--EYIRTIWGMGYKFD 223


>gi|322419045|ref|YP_004198268.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125432|gb|ADW12992.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 227

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 103/234 (44%), Gaps = 21/234 (8%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK 56
           + ++I+D   + +        +G     S +G   LE    LQ     D+  ++  L   
Sbjct: 3   VILIIEDEKDLAELISFNLQQEGYKTVISHDGAEGLEAANRLQ----PDLILLDLMLP-- 56

Query: 57  GEKVLELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G    ++ + IR     S +P++ ++        +  F+ G DD V KP   RE++ R+ 
Sbjct: 57  GMLGTDVCKSIRKSEKTSHIPVMMLTARGEEIDKVVGFEVGADDYVVKPFSTRELMLRIK 116

Query: 114 AIYRRLKVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           AI RR   +N+ AE      G I + ++     V G+       E ++L  L+   G+  
Sbjct: 117 AILRRNANANSPAESAIINVGCISIDTERHLVTVDGKEVSFTTTEFKLLYTLVMRFGRVQ 176

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++  +   ++G ++   +   V++H+++LR K+      D + + R  GY ++ 
Sbjct: 177 SRDVLLRDVWG-YNFVEDTRTVDTHVTRLRTKMGEAG--DMIKTVRGFGYKLEV 227


>gi|169632456|ref|YP_001706192.1| OmpR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169151248|emb|CAO99934.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter baumannii]
          Length = 228

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +  F+  +         + ++  ++  +       L
Sbjct: 4   IMLVEDEVELAHLVCDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPR--MDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+ 
Sbjct: 62  TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLER 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I    
Sbjct: 122 KAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPD 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
              V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 181 SFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFEY 225


>gi|159027076|emb|CAO89261.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 250

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 102/232 (43%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-------AREDVSAIEAFLI 54
            ++++D  +++D  I    ++G    G +       L  S       +R D+  ++  L 
Sbjct: 21  ILIVEDEEVIRDMIILALEEEGYEALGVSDGRAALELLQSQESNHGESRFDLVVLDLMLP 80

Query: 55  GKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++R H  + P++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  Q--ISGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR   ++       +   + +++      V+ E   L  +E R+L+  M+   +  +
Sbjct: 139 ALIRRQGFTSLAAAPVRKFRDVLLYTQECRVTVRHEEINLSPKEFRLLDLFMSYPRRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   I+G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLIEQIWGP-DFLGDTKTVDVHIRWLREKLEIDPSQPEYLITVRGFGYRF 249


>gi|148239881|ref|YP_001225268.1| two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. WH 7803]
 gi|1055347|gb|AAB38749.1| response regulator PhoB [Synechococcus sp. WH 7803]
 gi|147848420|emb|CAK23971.1| Two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. WH 7803]
          Length = 234

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++++D   +++        +G  ++   +      L S+   E V  +   L+  G   
Sbjct: 6   LLVVEDDDSIRETVEEALRAEGFEVKSCGNGADAMALLSAPNTEGVDLLVLDLMLPGLGG 65

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R +R  ++  P++ IS   S    +   + G DD + KP   RE++AR  A+ RR 
Sbjct: 66  LDLCRQLRKLNNHTPVLVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRS 125

Query: 120 KV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +             +TG + +++        GE   L  +E +ILE L+ N  +  ++ Q
Sbjct: 126 QQIASVPSEDRQVVQTGNLCLYAQECRVTRDGEDLTLSPKEYKILELLIRNPKRVWSRDQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   I+G+ D   +   V+ HI  LR+K+         + + R  GY  
Sbjct: 186 LLERIWGI-DFVGDTKTVDVHIRWLREKIEEEPSSPQHIRTVRGFGYRF 233


>gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 235

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +         +   D++ ++  L        
Sbjct: 10  LLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADEPDLAVLDVMLPD--MDGF 67

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +RA     P++ ++        +     G DD V KP    E++AR+ A+ RR  
Sbjct: 68  TITRKLRAAGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  N       + +  D  +    GE+  L   E ++L YLM N  + ++K+QI   +
Sbjct: 128 SGEDENATISVADLELDDDAHEVRRAGEIIDLSPTEFKLLRYLMMNPNRVLSKSQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +  +D   + ++VES+IS LR+K+        + +KR +GY
Sbjct: 188 W-EYDFNGDASIVESYISYLRRKVDRPEWPALIQTKRGVGY 227


>gi|222098001|ref|YP_002532058.1| response regulator [Bacillus cereus Q1]
 gi|228960804|ref|ZP_04122441.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229147097|ref|ZP_04275456.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST24]
 gi|229186790|ref|ZP_04313946.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BGSC 6E1]
 gi|229198686|ref|ZP_04325386.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1293]
 gi|221242059|gb|ACM14769.1| response regulator [Bacillus cereus Q1]
 gi|228584795|gb|EEK42913.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1293]
 gi|228596683|gb|EEK54347.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BGSC 6E1]
 gi|228636346|gb|EEK92817.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST24]
 gi|228798889|gb|EEM45866.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 230

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|138895267|ref|YP_001125720.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266780|gb|ABO66975.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
          Length = 223

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D         G       S         + + D+  ++  +        
Sbjct: 4   ILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKVDLVLLDIMMPE--LDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP+I ++        +     G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  ETCKRIREFSNVPIIMVTARDQTTDIVQGLKIGADDYITKPFDESELLARIEAVLRRSVG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +++ E   +    D      Q +   L  +E  IL   + +  +  ++ QI  +++G +
Sbjct: 122 KHSKMEFQGLVWDEDEYKVHYQNKPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
           +   EE  ++SH+  +R+KLR         + +   +GY  +
Sbjct: 181 NANTEERTIDSHVKNIREKLRQAGFPIDQFLQTVWGVGYKWE 222


>gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 236

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +   ++           R D   ++  L       LE
Sbjct: 14  LVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAAKEFRPDAVVLDIMLPDF--DGLE 71

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR+    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 72  VLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAGA 131

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +++    G + +  D R+    G    L   E  +L +LM N  + ++K QI   +
Sbjct: 132 QQATASSTLVVGDLELDEDSREVFRAGREVTLTATEFELLRFLMRNPRRVLSKAQILDRV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 192 WN-YDFGGQANVVELYISYLRKKI-DAGHEPMIHTMRGAGYVL 232


>gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144]
 gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144]
 gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis
           FRI909]
          Length = 241

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 89/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +      +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPE--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 63  EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQT 122

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +N            E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 123 ANTEQSEPHARDIIEFSHLVIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEV 233


>gi|229012417|ref|ZP_04169592.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229170815|ref|ZP_04298429.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228612653|gb|EEK69862.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228748776|gb|EEL98626.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 237

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 91/231 (39%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +   +    + +    L  + + D+  ++  +  K     
Sbjct: 5   ILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKK--DGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD + KP   RE++ RV  I RR   
Sbjct: 63  ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E   ++++   R   V  +   L  +E  +L  +  +  +  +++Q+
Sbjct: 123 VQIQAKESLLEVIEFPDLKIYPKTRYVLVCNKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
              I+  F      N V   +S+LR+KL      +  + +   +GY  + N
Sbjct: 183 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPN 232


>gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 230

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V++        +G  +           L    +  +  ++  +       L
Sbjct: 3   ILVADDEQAVRESLRRSLTFNGYEVVLAEDGAQAVELIEKEQPTLVILDVMMPQ--MDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++    +   +   D+G DD + KP    E+LARV +++RR  
Sbjct: 61  EVCRTLRSTGDDRPILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLFRRSI 120

Query: 121 VSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +         E   + +  D RD    G+   L R E  +LEYLM N  K ++++ I 
Sbjct: 121 TESQAPEQPKELEFEDLVLNPDTRDVTRGGKPISLTRTEFALLEYLMRNPRKVLSRSDIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G ++     N +E +I  LRKK         + + R +GY +
Sbjct: 181 EEVWG-YNFPTSGNALEVYIGYLRKKTEANGESRLIHTVRGVGYVL 225


>gi|311069837|ref|YP_003974760.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870354|gb|ADP33829.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 239

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 8/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G       +   EE +    +E +  +   ++  G    
Sbjct: 6   ILIVDDENAIVDMVKRVLDKEGFQ-NVMTAGSAEEAIPIVKKEKIDLLVLDVMMDGMSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E    IR +S  P+  ++   S    L  F SG DD + KP +  E++AR+ A  +R   
Sbjct: 65  EACAAIREYSDAPIFFLTAKTSDTDKLSGFASGADDYITKPFNPLELVARIRAHLKRTYK 124

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S+          +    +  V G+V     +  ++L+Y   +    ++K QI+  
Sbjct: 125 QEDGRSSTPYAYEHFTFYPQFAELIVGGKVVSCSAQLLQLLQYFCDHPNVVLSKDQIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           ++G +    + N V  H+ KLR+K+ R+    + + + R LGY    N
Sbjct: 185 VWG-YPSYGDNNTVMVHVRKLREKIERDASDPEYIVTVRGLGYRFIPN 231


>gi|302521900|ref|ZP_07274242.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302430795|gb|EFL02611.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 267

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 44  LVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLP--GFDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++AH  VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 102 VCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVERA 161

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + V    R   V+GE   L   E  +L  L       +++ Q+ 
Sbjct: 162 ALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 221

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 222 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 263


>gi|167760669|ref|ZP_02432796.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
 gi|167661556|gb|EDS05686.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 90/231 (38%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++ +++  F S         S   D++ ++  L       L
Sbjct: 5   ILVVDDEKEIADLIEVYLQNENLNVYKFYSGTEALAHMESVDFDLAILDIMLPD--ISGL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +I+R      P+I ++        +     G DD + KP    E++ARV A  RR K
Sbjct: 63  SICQIMREKGCACPIIMLTAKDEETDKITGLMLGADDYITKPFRPLELVARVKAQLRRYK 122

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     +    E   + +     +  + GE   L   E  IL  L+  +G  V+  
Sbjct: 123 KYNTVSAAPATETILEYAGLTMNIKTYECLLNGESLSLTPTEFAILRVLLERKGSVVSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            +F  I+         N +  HI  LR+K+++  G    + +   +GY I+
Sbjct: 183 DLFHEIWQDEYYNKSNNTITVHIRHLREKMKDTGGNPKYIKTIWGVGYKIE 233


>gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 227

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++    +  +    +E F +    E      RE++  +   ++   E    
Sbjct: 5   LIVDDEQDMRNLIEMMLNNS--DIETFTAASGTEAYDVIVRENIDLVLLDVMMPHEDGFV 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA S VP+I ++   + +  +     G DD + KP  H E++AR+ A+ RR   +
Sbjct: 63  VCQSIRAMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122

Query: 123 NNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      G I++    R   V G+  PL  +E  +L   M N G   ++ Q+   I
Sbjct: 123 ITELQQKYVIFGSIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYSREQLLERI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + D       V++HI  LR KL  K     + +   +GY  D
Sbjct: 183 WDI-DYVGGTRTVDTHIKTLRIKLG-KDAASHIQTVWGVGYRFD 224


>gi|302552415|ref|ZP_07304757.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470033|gb|EFL33126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 245

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 99/234 (42%), Gaps = 22/234 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   V++        +G     +++G ++L+      ++ R D+  ++  +    
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALDKA----AAYRPDLVVLDIQMPR-- 66

Query: 58  EKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L   R IRA     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ 
Sbjct: 67  MDGLTAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALL 126

Query: 117 RRLKVS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           RR   +           +      +R+    R+    G    L R E  +LE  + +  +
Sbjct: 127 RRSSYAAAMGAGSPADEDALTFADLRMDLATREVTRGGRQVELTRTEFTLLEMFLTHPRQ 186

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 187 VLTREQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239


>gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
 gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
          Length = 248

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D   +    +G  +    +             DV  ++  L       LE
Sbjct: 20  LVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDF--DGLE 77

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R H   VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 78  VMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  +     E G +R+  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 138 SEEKPASILEVGDLRMDEDSHEVWRGGDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE +IS LR+K+ +K     + + R +GY +
Sbjct: 198 WN-YDFGGQANIVELYISYLRRKI-DKGREPMIHTMRGVGYVL 238


>gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 232

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       DG  +    S+       S  R D+  ++  L        
Sbjct: 4   LLVVEDDPALVTGLRYSMEKDGFQVRTAGSVREGWQAFSQDRPDLVVLDVGLPD--GTGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  +  P++ ++        +   D G DD + KP   RE+L+RV A+ RR   
Sbjct: 62  DLCRQIRVENGTPILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALLRRSAD 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  +G + + ++       GE   L   E R+L  LM N G+ + + Q+   ++  
Sbjct: 122 KPVKTLVSGAVTLDTEEAHVCRNGEEISLTPAEYRLLRLLMQNEGRTLTREQLLDTLWDS 181

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             + V+EN +  +I +LR K+ +       + + R +GY 
Sbjct: 182 GGDFVDENTLSVYIRRLRAKIEDNPSSPVHIHTVRGVGYR 221


>gi|255505410|ref|ZP_05345906.3| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255268308|gb|EET61513.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 245

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEK 59
            +++DD   + D       ++   +  +      + L+   +E  D++ ++  L      
Sbjct: 19  ILIVDDEREIADLVELYLKNENFQV--YKYYSAADALRCIEKEKLDLAILDVMLPET--D 74

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             ++ R IR     P+I ++        +     G DD + KP    E++ARV A  RR 
Sbjct: 75  GFQICRKIREKYNYPVIMLTAKGEEVDKITGLTLGADDYITKPFLPLELVARVKAQLRRY 134

Query: 120 KVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           K  N       +  E G + +     +  +  +   L   E  IL  L  NRG+ V+  +
Sbjct: 135 KRYNVGAQPQADVFEYGGLVLNVTTHECTLNEKPLVLTPTEFSILRILCQNRGRVVSSEE 194

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +F  I+         N +  HI  LR+K+ +       + +    GY I+
Sbjct: 195 LFRQIWKEEYFTKNNNTITVHIRHLREKMGDSFENPKYIKTVWGCGYKIE 244


>gi|15924683|ref|NP_372217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927271|ref|NP_374804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|57650564|ref|YP_186577.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus COL]
 gi|87162022|ref|YP_494334.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195500|ref|YP_500304.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148268173|ref|YP_001247116.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394240|ref|YP_001316915.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221798|ref|YP_001332620.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156980010|ref|YP_001442269.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509907|ref|YP_001575566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221142557|ref|ZP_03567050.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253317163|ref|ZP_04840376.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253732344|ref|ZP_04866509.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734523|ref|ZP_04868688.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006477|ref|ZP_05145078.2| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794078|ref|ZP_05643057.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|258415782|ref|ZP_05682053.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|258421981|ref|ZP_05684901.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|258438261|ref|ZP_05689545.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|258443719|ref|ZP_05692058.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|258445930|ref|ZP_05694106.1| response regulator [Staphylococcus aureus A6300]
 gi|258448389|ref|ZP_05696506.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|258451793|ref|ZP_05699815.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|258454130|ref|ZP_05702101.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|262048663|ref|ZP_06021546.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262052264|ref|ZP_06024469.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|269203311|ref|YP_003282580.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282893188|ref|ZP_06301422.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|282920233|ref|ZP_06327958.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282927823|ref|ZP_06335434.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|284024741|ref|ZP_06379139.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848714|ref|ZP_06789460.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|295406003|ref|ZP_06815811.1| two-component system [Staphylococcus aureus A8819]
 gi|296274880|ref|ZP_06857387.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245071|ref|ZP_06928948.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|304380716|ref|ZP_07363385.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13701489|dbj|BAB42783.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247465|dbj|BAB57855.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|57284750|gb|AAW36844.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus COL]
 gi|87127996|gb|ABD22510.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203058|gb|ABD30868.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741242|gb|ABQ49540.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946692|gb|ABR52628.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374598|dbj|BAF67858.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156722145|dbj|BAF78562.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368716|gb|ABX29687.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723866|gb|EES92595.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727464|gb|EES96193.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257788050|gb|EEV26390.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|257839375|gb|EEV63848.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|257842025|gb|EEV66454.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|257848305|gb|EEV72296.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|257851125|gb|EEV75068.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|257855172|gb|EEV78111.1| response regulator [Staphylococcus aureus A6300]
 gi|257858357|gb|EEV81242.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|257860505|gb|EEV83331.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|257863582|gb|EEV86339.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|259159865|gb|EEW44904.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|259163310|gb|EEW47869.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262075601|gb|ACY11574.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269941173|emb|CBI49560.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus TW20]
 gi|282590333|gb|EFB95412.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|282594581|gb|EFB99566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282764506|gb|EFC04632.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|285817376|gb|ADC37863.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 04-02981]
 gi|294824740|gb|EFG41163.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|294969000|gb|EFG45021.1| two-component system [Staphylococcus aureus A8819]
 gi|297178151|gb|EFH37399.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|302751519|gb|ADL65696.1| response regulator OmpR [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340715|gb|EFM06646.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312830071|emb|CBX34913.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130673|gb|EFT86659.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315198610|gb|EFU28938.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140428|gb|EFW32282.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143967|gb|EFW35736.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314365|gb|AEB88778.1| Two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329727125|gb|EGG63581.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21172]
 gi|329728426|gb|EGG64863.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21189]
 gi|329733213|gb|EGG69550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21193]
          Length = 234

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +      +       S + D+  ++  L  K    ++
Sbjct: 6   LVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKK--DGID 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R +   VP++ ++        +   + G DD + KP   RE++ARV AI RR + 
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E       G IR+  D  +     E+  L  +E  +L YL+  +G+ + +  + +
Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++  ++ A +  +V+ HIS LR KL +       + + R LGY ++
Sbjct: 184 TVWN-YEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229


>gi|284047543|ref|YP_003397882.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951764|gb|ADB46567.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 228

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G ++         E      + D+  ++  L   G    
Sbjct: 4   ILIVEDDLDIAELERDYLEANGFAVAIAGDGLAGEKAALDEKVDLVLLDIMLP--GMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR    +P++ +S        +     G DD + KP    E++ARV A  +R + 
Sbjct: 62  QVCRRIREKRNIPILLVSARQEDVDKIRGLGLGADDYIVKPFSPGELVARVKAHLQRYRQ 121

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       + +   G    ++G+   +P +E  +L +L  N G   +K  +F 
Sbjct: 122 LTGQHSGDQLLRRKDLTIDRKGHHVYLKGKEIAMPNKEFSLLLFLAENPGVVFSKETLFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            I+G  D   +   V  H++++R+K+       + +++   +GY  
Sbjct: 182 RIWGE-DSLGDTATVSVHVNRIREKIEPSTAKPEYIETVWGVGYRF 226


>gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +          +G  +           L  S + D+  ++  L       +
Sbjct: 5   ILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPS--LNGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P++ I+   S+   +   D+G DD + KP    E+LAR+ A++RR+  
Sbjct: 63  EVCRRIRAAKSTPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N        + V    R  +   E   L +RE  +L   M N    + +  +   ++G
Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE NVV+ ++  LR+KL        + + R  GY +
Sbjct: 183 -FDAEVETNVVDVYVRYLRQKLDEHDKERYIQTVRGTGYVM 222


>gi|218682120|ref|ZP_03529721.1| putative phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium etli CIAT 894]
          Length = 227

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G  ++     +  E        D+  ++  L   G   +EL
Sbjct: 7   VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEMRLQERTPDLLILDWMLP--GVSGIEL 64

Query: 64  PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R +R   +    P+I ++        +    +G DD V KP    E++ARV A+ RR +
Sbjct: 65  CRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRAR 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   + G I +  +      +     L   E R+LE+LM++ G+  +++Q+   ++
Sbjct: 125 PEVLSTVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 185 G-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|209964019|ref|YP_002296934.1| two-component transcriptional regulator, putative [Rhodospirillum
           centenum SW]
 gi|209957485|gb|ACI98121.1| two-component transcriptional regulator, putative [Rhodospirillum
           centenum SW]
          Length = 225

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A   +       + G  ++   + +   +L +S   D   ++  L   G   L
Sbjct: 3   ILVIEDDAGTAEYLTKGLKEAGHVVDHAATGKDGLFLAASESYDALVVDRMLP--GRDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  ++RA    +P + +S   S++  +    +G DD + KP    E+LAR+ A+ RR +
Sbjct: 61  SVLEVLRATGNGIPALVLSALSSVEDRVKGLRAGADDYLPKPFAFSELLARLDALERRAR 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S    R +   + +    R     G    L  RE  +LE+LM N G  V +T +   ++
Sbjct: 121 GSGPVTRLQVSDLEMDLLARSVSRAGRPVDLLPREFLLLEFLMRNAGHVVTRTMLLERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HI++LR+K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHIARLRQKIDKDHPAPLIHTVRGAGYVL 221


>gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18]
 gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 234

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +    E L+ +  E+   I   ++  G    
Sbjct: 7   LLVVDDEFNILELLATSLRFAGFEV--VTAGNGREALEKAHAENPDLIVLDVMMPGMDGF 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R + +  P++ ++   + +  +    +G DD V KP    E++AR+ AI RR +
Sbjct: 65  EVTRRLRENGTTTPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 124

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +  D  +  +  E   L   E  +L YLM N  + ++K QI   
Sbjct: 125 SVQEEDDAVLRVDALTLNVDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDH 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220
           ++  +D   + ++VES+IS LR+K+ N        + +KR +GY I
Sbjct: 185 VW-EYDFNGDSSIVESYISYLRRKIDNNRENHEPLIHTKRGVGYMI 229


>gi|229032183|ref|ZP_04188158.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1271]
 gi|228729140|gb|EEL80141.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1271]
          Length = 230

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI+S
Sbjct: 123 YSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYS 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|225848484|ref|YP_002728647.1| transcriptional activator protein CopR [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643352|gb|ACN98402.1| transcriptional activator protein CopR [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 224

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +         ++G +++   + + EE +  +  E+   I   ++       E
Sbjct: 4   LIIEDDKELSHLIAKRLKEEGFAVQ--QAFDAEEGMSYATYEEYDVIVLDIMLPKMSGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R    + P++ +S    ++  +     G DD + KP    E++AR+ A+ RR K 
Sbjct: 62  VIRQLREKKVKTPILVLSAKGEIEDKVKGLQLGADDYLTKPFSFPELIARINALIRRTKT 121

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                + +   + +    ++    G+   L  +E  +L+YL+ N  + + +  I   ++ 
Sbjct: 122 IEEISKLKYADLTIDLLKKEVYRNGKKINLTAKEFELLKYLVENSERIITRNMILENVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + D  ++ NVV+ HI +LR+K+  +     + + R  GY +
Sbjct: 182 I-DFDIDSNVVDVHIHRLREKIDKRFEKKLIHTVRGFGYVL 221


>gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 237

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +   ++   + E    L +    ++  ++  +       +
Sbjct: 6   ILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMP--KIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCKKLRYKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            +    +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSSNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FQNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|269794263|ref|YP_003313718.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096448|gb|ACZ20884.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 223

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +    +  S   D+  ++  L   G+   E
Sbjct: 2   LVVDDDTALAEMIGLVLKTEGFDPVFCADGDAAIGIFRSTSPDLVLLDVMLP--GKDGTE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IRA S VP+I ++        +   +SG DD ++KP   +E++AR+ A  RR  + 
Sbjct: 60  VCRQIRAESGVPVIMLTAKSDTVDVVQGLESGADDYISKPFKPKELVARIRARLRRTDEP 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  R   G + +   G      G    L   E  +L  L     +  ++  +   ++G +
Sbjct: 120 APERLSIGDLEIDVTGHRVTRAGAAISLTPLEFDLLVALARKPWQVFSREVLLEKVWG-Y 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 179 RHAADTRLVNVHVQRLRSKIEHDPEVPEIVLTVRGVGYK 217


>gi|253578483|ref|ZP_04855755.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850801|gb|EES78759.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  L++D   +++  I      G   +GF             +  +  ++  L    E  
Sbjct: 1   MIYLVEDDESIRELVIYTLKSQGFEAKGFERPSHFWKALEKEKPALLLLDVMLPE--EDG 58

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + + + +R        P+I ++   S   T+   DSG DD + KP    E+++R+ A+ R
Sbjct: 59  ISILKKLRMRPDTRKLPIIMLTAKSSEYDTVVGLDSGADDYIPKPFRMMELISRIRALLR 118

Query: 118 RLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R +        TG + V        V  +   L  +E  +L  L+ N G  +++TQ+ + 
Sbjct: 119 RTEDDGAEEYRTGNLYVCPSRHIATVDKKNVNLTLKEYEVLCLLLKNSGTVLSRTQLLNQ 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G ++   E   V+ HI  LR+KL +    + V++ R +GY I+
Sbjct: 179 VWG-YEFDGESRTVDVHIRTLRQKLGSAG--ELVETVRGVGYKIN 220


>gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +    D    +E     E    L      D+  ++  L       +
Sbjct: 3   ILLVEDDENIALPVVEDLSDRHYIVEVAQDGEMAFELLDVYEYDLILLDIMLP--KIDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R    Q P++ ++   ++   +   D+G DD + KP   +E+ AR+ A+ RR  
Sbjct: 61  SLCRRLRSQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRRGD 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S       G + +  +  +   Q +   L  +E ++LE+ + +  +   +TQI   ++ 
Sbjct: 121 SSLPPVLTWGNLSLNPNTCEVFYQEQPLSLSPKEYKLLEFFLRHPHRVFNRTQILDHLWP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           L ++  EE  V++HIS LR+K++   G  D +++   LGY +
Sbjct: 181 L-EQLPEEATVKAHISSLRQKIKAVGGVPDLIETVYGLGYRL 221


>gi|315186290|gb|EFU20051.1| two component transcriptional regulator, winged helix family
           [Spirochaeta thermophila DSM 6578]
          Length = 226

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   ++ E  + L+ +      AI   L+  G   L
Sbjct: 3   ILVVDDEPDIVELVRFHLEREGYEV--VSTGEGRDALEKARNLLPDAIILDLMLPGMSGL 60

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R++R     S +P++ ++        +   + G DD + KP   R +LAR+ A+ +R
Sbjct: 61  EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120

Query: 119 L----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G + +        V+G    L   E  IL +L  N G   ++ QI 
Sbjct: 121 THPPEGRSDEPIVVGELVIDPHRYSVRVRGREVILSATEFAILSFLARNPGWVFSRQQII 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A+ G  D  V E  V+  I  +RKKL +    D + + R +GY +
Sbjct: 181 DAVKGE-DYPVTERAVDVQILSIRKKLGDA--RDYIQTVRGVGYRL 223


>gi|228939121|ref|ZP_04101716.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228820544|gb|EEM66574.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939698|gb|AEA15594.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 234

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 101/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + L+      V  +   ++       
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVMLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEVS 233


>gi|86739186|ref|YP_479586.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566048|gb|ABD09857.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 226

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    +   +G  +                  D+  ++  L   G    
Sbjct: 4   LLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLP--GLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR   
Sbjct: 62  EVCRTLRTRSTVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +V +   E GP+R+  +     V G    LP +E  +LE  + N G+ + + Q+   +
Sbjct: 122 NEEVGDATLEAGPVRMDVERHVVTVDGTTVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+ ++ G    + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEHEPGNPRHLVTVRGLGYKFE 225


>gi|229546063|ref|ZP_04434788.1| response regulator [Enterococcus faecalis TX1322]
 gi|256852903|ref|ZP_05558273.1| response regulator [Enterococcus faecalis T8]
 gi|229308836|gb|EEN74823.1| response regulator [Enterococcus faecalis TX1322]
 gi|256711362|gb|EEU26400.1| response regulator [Enterococcus faecalis T8]
          Length = 239

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 104/241 (43%), Gaps = 30/241 (12%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-------EGFNSLEFEEWLQSSAREDVSAIEAFLI 54
            ++I+D   V +     F ++G          EG  +     +L SS + D+  ++  L 
Sbjct: 3   ILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTT-----FLASSEKWDMITLDLNLP 57

Query: 55  GKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 + + R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ 
Sbjct: 58  S--MDGMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMK 115

Query: 114 AIYRRLKVSNNRAE------------TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYL 160
           A++RR +V+    +            T   ++ +  R+  +  ++   L  +E  +L  L
Sbjct: 116 ALHRRAEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTL 175

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  
Sbjct: 176 AKKPRQVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKF 233

Query: 221 D 221
           D
Sbjct: 234 D 234


>gi|152998395|ref|YP_001343230.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839319|gb|ABR73295.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 236

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD + +++         G       +++    +    R D+  ++  +   G   +E
Sbjct: 12  LIIDDESSIREMIAIALEMAGYEYLEAENIQQAHEIIVDHRPDLILVDWMMP--GGSGIE 69

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++  +   ++P+I ++        +   + G DD + KP   RE++AR+ A+ RR 
Sbjct: 70  LTRRLKKDTTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 129

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +   E   + +    +   +      +   E R+L++LM ++ +  ++ Q+   +
Sbjct: 130 TPQGVDEPIEIEGLTLDPISQRVTIGSRPLDMGPTEYRLLKFLMTHQERAYSRAQLLDQV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK + +   F  + + R  GY  
Sbjct: 190 WGG-NVYVEERTVDVHIRRLRKAIGSTHDF-LIQTVRGTGYRF 230


>gi|119945892|ref|YP_943572.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
 gi|119864496|gb|ABM03973.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
          Length = 227

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D    +    G      ++ +           D+  ++      G   +
Sbjct: 5   ILVVEDEVAIRDMLCFVLDQHGYECIEADTYQSALNQLHEPYPDLILLDWMFP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L   ++  +    +P++ ++     Q  +   ++G DD V KP   +E++AR+  + RR
Sbjct: 63  KLLSHLKQDNILRSIPVVMLTARGEEQDKVRGLENGADDYVTKPFSPKELMARLKTVMRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +  ++      +++        +  E   +   E  +L + M +  +  ++ Q+ + 
Sbjct: 123 VNPTSLDDELSFNKLKLDPVSHRVSLADEALNMGPTEFNLLHFFMTHPERVYSREQLLNN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L +      + + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALADH--DHLIQTVRGAGYRF 223


>gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
 gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
          Length = 251

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D   A     G  +    +         +   D+  ++  L        
Sbjct: 30  ILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPD--MSGF 87

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + +R A  + P+I +S   S +  +     G DD V KP    EILARVAAI RR K
Sbjct: 88  AATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTK 147

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G + +  +  +  ++G +  L   E ++L Y M N  + ++K+QI   ++
Sbjct: 148 IDDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVW 207

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + ++VES+IS +R+KL        + +KR  GY +
Sbjct: 208 D-YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIM 248


>gi|86607308|ref|YP_476071.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555850|gb|ABD00808.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 230

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +           G  +                  D+  ++  L   G   L
Sbjct: 11  ILVIEDEAKLARFLETELAYRGYRVSVVGDGTVALAAARDQNPDLVLLDWMLP--GISGL 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   ++VP++ ++    +   +   D+G DD V KP   +E+LAR+    +  K
Sbjct: 69  EVCRQLRLTGNRVPVVLMTASDEVADRVAGLDAGADDYVVKPFSLQELLARIRIYLQPPK 128

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S ++R     + +    R          L  +E  +L YLM +  + + + QI   ++G
Sbjct: 129 GSGDSRLVFMDLTLDPVTRQASRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR K+        + + R +GY +
Sbjct: 189 -YDFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVL 228


>gi|87124761|ref|ZP_01080609.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
 gi|86167640|gb|EAQ68899.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
          Length = 249

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE---DVSAIEAFLIGKGE 58
            +L++D   +++        +G  +             + A     D+  ++  L G G 
Sbjct: 22  LLLVEDDESIRETVREALKAEGFDVLACGDGAEALAALTDAAAEPVDLVVLDLMLPGLG- 80

Query: 59  KVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             L+L R +R +    P++ IS   S    +   + G DD + KP   RE++AR  A+ R
Sbjct: 81  -GLDLCRQLRKNDNSTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLR 139

Query: 118 RLKVSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R +  ++            + +F++        +   L  +E +ILE  + N  +  ++ 
Sbjct: 140 RSQQPSSSEAPPQVYRHENLCLFAEECRVSRDDKDLSLSPKEYKILELFIKNPRRVWSRD 199

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           Q+   I+G+ D   +   V+ HI  LR+K+ +       + + R  GY  
Sbjct: 200 QLLERIWGI-DFVGDTKTVDVHIRWLREKIEDEPSAPKHIRTVRGFGYRF 248


>gi|260587734|ref|ZP_05853647.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|260541999|gb|EEX22568.1| regulatory protein VanR [Blautia hansenii DSM 20583]
          Length = 299

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  F   E           D++ ++  +       L
Sbjct: 73  ILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMP--KISGL 130

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K 
Sbjct: 131 ELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYKR 190

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +    E   + +     +  +   +  L   E  IL  L   +G  V+  ++F
Sbjct: 191 YNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAEELF 250

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+     +   N +  HI  LR+K+ +       + +    GY I+
Sbjct: 251 HQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIE 298


>gi|153855183|ref|ZP_01996367.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
 gi|149752352|gb|EDM62283.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
          Length = 227

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 108/225 (48%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD + ++       G +G  +    + +  E ++    E D++ I   ++      
Sbjct: 6   ILVVDDESRMRKLVKDFLGREGYQV--LEAGDGMEAMEVFYDEKDIALIILDVMMPRMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R +R  S+VP+I ++     +  L  F  GVD+ ++KP   + ++ARV AI RR  
Sbjct: 64  WQVCREVRQSSKVPIIMLTARSEERDELQGFALGVDEYISKPFSPKILVARVNAILRRAN 123

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V    +  + G I +       ++ G+   L  +E  +L Y + N+G  +++ +I + ++
Sbjct: 124 VLGGGDEIDAGGIVIDKAAHQVKIDGKEIELSFKEFELLSYFVENQGIALSREKILNNVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +D   +   +++H+ KLR KL  K   + + +   +GY  + +
Sbjct: 184 D-YDYFGDARTIDTHVKKLRSKLGEKG--NYIKTIWGMGYKFEVD 225


>gi|94495738|ref|ZP_01302318.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
 gi|94425126|gb|EAT10147.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
          Length = 233

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 105/225 (46%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + +  I  F  +   +      E    +      D+  ++  +  +    +E
Sbjct: 7   LLVEDDAALAELLIWHFKREDFDVSHTVDGEEALLMAQETVPDIVLLDWMV--ESLSGIE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R     + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ RR+
Sbjct: 65  VCRRLRRMTGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +        + + + G      G+V PL   E R+L++ + + G   ++ ++  ++
Sbjct: 125 RPALAGETLTFADVEMDTVGHKVRRSGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           +G  D  +E   V+ HI +LRK +     + D + + R  GY++D
Sbjct: 185 WGQ-DSDIELRTVDVHIRRLRKAINADGQYQDIIRTVRSAGYALD 228


>gi|332798939|ref|YP_004460438.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696674|gb|AEE91131.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 239

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 100/231 (43%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  ++   +++ +E L  +  ++   I   L+      L
Sbjct: 8   ILVVDDEKNIRELVRFNLESRGYKVK--EAMDGKEALSIARTDEPLLIILDLMLPKIDGL 65

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ RI++   +  ++P+I ++        +   + G DD + KP   RE++ARV A+ RR
Sbjct: 66  EVCRILKGDPSTKKIPIIMLTALGDEIDKIVGLELGADDYITKPFSPREMVARVRAVIRR 125

Query: 119 L-------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +       +  ++  E   + +     +  + G    L  +E  +L+   AN     ++ 
Sbjct: 126 VEDRRKPEEPEHSVNEFNDLVIDEQKHEVLLSGSRLDLTLKEYELLKVFAANPFNVFSRE 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSI 220
            +   ++G +D   +   V+ H+  LR+KL          +++ R +GY  
Sbjct: 186 HLLEKVWG-YDFMGDTRTVDVHVCNLRRKLEEADDKTGYYIETVRGVGYRF 235


>gi|288957923|ref|YP_003448264.1| two-component response regulator [Azospirillum sp. B510]
 gi|288910231|dbj|BAI71720.1| two-component response regulator [Azospirillum sp. B510]
          Length = 226

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G  ++  N  +   +L  +   DV  ++  L   G   L
Sbjct: 3   ILVIEDDRQAASYLAKGLKEAGHVVDVANDGKEGLFLAGAEHYDVMIVDRMLP--GRDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L +++RA  +  P++ +S   S+   +    +G DD + KP    E+LAR+  + RR  
Sbjct: 61  SLVQVLRAAGNDTPVLFLSALGSVDDRVKGLKAGGDDYLTKPFAFSELLARIEVLVRRRG 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R   G + +    R  +  G+   L  RE  +LEYLM N G  V +T +   ++
Sbjct: 121 AAQPQTRLAVGDLELDLLSRSVKRCGKAIDLLPREFSLLEYLMRNAGSVVTRTMMLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HI++LR+K+        + + R  GYS+
Sbjct: 181 D-YHFDPQTNVIDVHIARLRQKIDKDFPTPLIHTVRGAGYSL 221


>gi|86356168|ref|YP_468060.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CFN 42]
 gi|190890217|ref|YP_001976759.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CIAT 652]
 gi|86280270|gb|ABC89333.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CFN 42]
 gi|190695496|gb|ACE89581.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CIAT 652]
 gi|327192727|gb|EGE59663.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CNPAF512]
          Length = 227

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G  ++     +  E        D+  ++  L   G   +EL
Sbjct: 7   VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILDWMLP--GVSGIEL 64

Query: 64  PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R +R   +    P+I ++        +    +G DD V KP    E++ARV A+ RR +
Sbjct: 65  CRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRAR 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++  + G I +  +      +     L   E R+LE+LM++ G+  +++Q+   ++
Sbjct: 125 PEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 185 G-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|254385529|ref|ZP_05000855.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194344400|gb|EDX25366.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   +   +++  + L  +A      I   +       L
Sbjct: 10  ILVVDDEPAVREALRRSLAFEGYGAQ--TAVDGLDALDKAASYAPDLIVLDIQMPRMDGL 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R A S  P++ ++   ++   +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 68  TAARRLRSAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSA 127

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       +    G +R+    R+    G    L R E  +LE  +A+  + + + 
Sbjct: 128 YAAPAAGGAEPEDALTFGDLRMDLATREVTRAGRPVELTRTEFTLLEMFLAHPRQVLTRE 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI   ++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 188 QILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAGGESRLVHTVRGVGYVL 235


>gi|229013739|ref|ZP_04170867.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides DSM 2048]
 gi|229135371|ref|ZP_04264160.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST196]
 gi|228648067|gb|EEL04113.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST196]
 gi|228747408|gb|EEL97283.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides DSM 2048]
          Length = 239

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 99/228 (43%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  + EE + +  +     I   ++      L
Sbjct: 14  ILLVEDDISIQEMVETYLVKEGFQVTIAS--DGEEGVNAFLKGSFDLIILDIMMPKLDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 72  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 131

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  +   + G + +       E +G    L  +E  IL+  + N+ +   K QI++
Sbjct: 132 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 192 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 238


>gi|229096500|ref|ZP_04227471.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228686706|gb|EEL40613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + L+      V  +   ++       
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGIDALRKMDEVKVDMVILDIMMPNMDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 66  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  +  +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEEIWG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKLSIKTIRGLGYRLEVS 227


>gi|259415942|ref|ZP_05739862.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter sp. TrichCH4B]
 gi|259347381|gb|EEW59158.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter sp. TrichCH4B]
          Length = 229

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        DG  +    + E    L      D+  ++  +       +E
Sbjct: 9   LVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPN--LTGIE 66

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++  +     P+I +S        +   ++G DD V KP    E++ARV    RR+
Sbjct: 67  ICRRLKTRTDTRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRV 126

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    R E   I + ++        +   L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPATVGMRLEFDDIILDAETHKVSRSEQPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALTQHGGDDPVRTVRGAGYAL 228


>gi|221195251|ref|ZP_03568307.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
 gi|221185154|gb|EEE17545.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
          Length = 241

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  +++D   A    +  ++ G    +           D+  ++  L        
Sbjct: 8   ILIVEDETVIRDAVSAYLERENYAVRGVGDGQSAVEEFQKHSFDLVILDLMLP--KLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++RR   
Sbjct: 66  RVCRAIRDVSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRRAHK 125

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E G + +   G    ++GE   L   E ++L  L    G+  ++ ++   +
Sbjct: 126 ESEPQPEVLEYGALTIDISGHKILIRGEEVDLTASEFKLLTTLARYPGRVYSRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPHWLFTVHGVGYRFE 229


>gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   +          +G  +   N  +    L   +  D+  ++  +        
Sbjct: 5   IFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSDPDLLILDVMMPQ--MDGW 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R +R A S VP++ ++    +Q  +   D G DD + KP    E+LARV A+ RR  
Sbjct: 63  EVCRRVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRRKP 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + ++ R +   + +  D R+    G    L  +E  +L   M N  + + +  I   I
Sbjct: 123 DRQETDGRLQFEDMTLDLDSREAIRGGRRIDLTAKEFDLLHLFMQNPRRVLTRDSIMDKI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D + E NV+E +I+ LR+K  +      + + R  GY +
Sbjct: 183 WG-YDYSGESNVLEVYIAMLRQKTEDGTAKRLIQTVRGTGYVL 224


>gi|326804105|ref|YP_004321923.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651015|gb|AEA01198.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 247

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 94/243 (38%), Gaps = 26/243 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +G  +      +    L S    D   ++  L       ++
Sbjct: 5   LVVDDEESIRKLLEYNLSKEGYEVTSSADGKAAYDLASEKNFDFIILDLMLPS--MDGMD 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + +R      P++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 63  VCKQLRQDKVNTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVVARMKAILRRSRD 122

Query: 121 --------------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
                                  +  + G I +          G+   + ++E  +L YL
Sbjct: 123 YGKVASDQEDKKEADQDPAGEEESVIQVGDITINKSDFSVTAHGQAVDMTKKEFELLTYL 182

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
                + V++  + S I+  FD +V   +V+ HIS LR+K+  +    + + + R  GY 
Sbjct: 183 AERVDRIVSREILLSKIWD-FDYSVGSRLVDVHISHLREKIEKDPKNPEYIITVRGFGYK 241

Query: 220 IDW 222
            + 
Sbjct: 242 FEV 244


>gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
          Length = 238

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +   +  + ++ L    ++   A+   L+  G   L
Sbjct: 5   ILLVEDDEDIATLLRLNLQDEGYQI--VHEADGDQALVQLEKQVWDAVILDLMLPGVDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++ARV A++RR +
Sbjct: 63  EICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQE 122

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R     + +    R+ +++GEV  L  RE  +L Y   + G+  ++  +
Sbjct: 123 AMGQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHPGEVFSRLAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+ R+    D + +    GY  
Sbjct: 183 LEQVWG-YQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKF 229


>gi|56696508|ref|YP_166865.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
 gi|56678245|gb|AAV94911.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
          Length = 226

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A  ++     F ++G ++E         +  +    D   ++  L   G   L 
Sbjct: 6   LIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHATDGGFDAMVLDRMLP--GLDGLA 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +RA     P+I ++   ++   +    +G DD + KP   +E+LARV A+ RR + 
Sbjct: 64  LIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRRPQD 123

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + +    R     G    L  RE +ILE+ +  + + + +T +   ++ 
Sbjct: 124 TQEATVLACRDLEMDLMRRKVTRAGREITLTPREFQILEFFLRRKNRVITRTMLLEGVWD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+V+ HISKLR+++        + + R  GY I
Sbjct: 184 -YHFDPNTNIVDVHISKLRRQIDEGAEVPLITTVRGAGYMI 223


>gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 227

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++       + G  +   ++             D+  ++  +   G   L
Sbjct: 4   ILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGLLETRHHPPDLILLDVMMP--GMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E  R  RA +  P++ ++   +    +   + G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  EFLRKYRADAGTPVMFLTARDAELDKVLGLELGADDYLTKPFSMAELLARIRALLRRAGE 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K +      G + + +  R   V+G+   L R E  +++  M +  +   + ++   +  
Sbjct: 122 KPTGGPVRVGVLELDAASRTFVVRGQRVDLTRSEFELMDLFMRHPQRVFTRVELLEHL-- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
             D    E  ++ H+  +R K+  + G    +++   +GY ++
Sbjct: 180 QEDSVGSERTMDVHVRNIRAKIEEEPGKPRLIETVFGVGYRLN 222


>gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++      L  +A  D+  ++  +        
Sbjct: 5   IMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVMMPQV--DGW 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +R   S VP++ ++    +   +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 63  EVCRRVREGGSTVPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRRKS 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + S+N+     + +  D R+    G    L  +E  +L   M N  + + +  I  
Sbjct: 123 DKIDESSSNKIVFDDLALDLDSREAIRSGRRIELTAKEYDLLLLFMQNPRRVLTRDAIME 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D + E NV+E +I+ LR+KL        + + R  GY +
Sbjct: 183 KIWG-YDFSGESNVLEVYIAMLRQKLEEGGAKRIIQTVRGTGYVL 226


>gi|116250319|ref|YP_766157.1| phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241202937|ref|YP_002974033.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|115254967|emb|CAK06041.1| putative phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|240856827|gb|ACS54494.1| two component transcriptional regulator PhoB, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 227

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G  ++     +  E        D+  ++  L   G   +EL
Sbjct: 7   VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEMRLQERTPDLLILDWMLP--GVSGIEL 64

Query: 64  PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R +R   +    P+I ++        +    +G DD V KP    E++ARV A+ RR +
Sbjct: 65  CRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRAR 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   + G I +  +      +     L   E R+LE+LM++ G+  +++Q+   ++
Sbjct: 125 PEVLSTVLKCGDIELDRETHRVHRKTREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 185 G-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|284006387|emb|CBA71623.1| two-component system, OmpR family, phosphate regulon response
           regulator [Arsenophonus nasoniae]
          Length = 234

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++    +   +G      +  +            +  ++  + G  G ++
Sbjct: 10  ILVVEDETAIREMVCFVLEQNGFQTVEADDYDSAIAQLIEPYPALILLDWMIPGGSGIQL 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   +  +    +P++ ++     +  +   + G DD + KP   +E++ARV AI RR+ 
Sbjct: 70  IAHMKRDQLTRNIPIMMLTARGEEEDRVRGLEIGADDYLTKPFSPKELIARVNAILRRVS 129

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S+N  E   +++               +   E ++L + M +  +   + Q+ + ++
Sbjct: 130 AMASDNVIEMNGLKLDPASHRVMSDATSIEMGPTEYKLLYFFMTHPERVYNREQLLNYVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+ +  +E+  V+ HI +LRK L        + + R  GY  
Sbjct: 190 GV-NVYIEDRTVDVHIRRLRKALAVGGHEKMIQTVRGTGYRF 230


>gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 220

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      SS   D+  ++  L  +    L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216


>gi|49081832|gb|AAT50316.1| PA1179 [synthetic construct]
          Length = 226

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++     E   +  S    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGLP--GMSGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R      P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  E GP+ +  + +   V+ +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R  GY
Sbjct: 180 PDDEERDANVIEVLVGRLRRKLEACGGFKPIDTVRGQGY 218


>gi|229062220|ref|ZP_04199542.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH603]
 gi|228717048|gb|EEL68727.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH603]
          Length = 239

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 99/228 (43%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  + EE + +  +     I   ++      L
Sbjct: 14  ILLVEDDISIQEMVETYLVKEGFQVTIAS--DGEEGVNAFLKGSFDLIILDIMMPKLDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 72  EVVRIIREKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTK 131

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  +   + G + +       E +G    L  +E  IL+  + N+ +   K QI++
Sbjct: 132 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 192 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 238


>gi|70726233|ref|YP_253147.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus haemolyticus JCSC1435]
 gi|68446957|dbj|BAE04541.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus haemolyticus JCSC1435]
          Length = 236

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 102/230 (44%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E     E      +  + ++  ++  L  K    +E
Sbjct: 6   LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVNEIQPELVVLDVMLPKK--DGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR K 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++   +            IR+  +  +     E+  L  +E  +L YL+  +G+ + +  
Sbjct: 124 ASEIEKADVDDEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 184 MLNSVWN-YEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|303247363|ref|ZP_07333636.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302491277|gb|EFL51166.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 225

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A           + G  ++         +L +    DV  ++  L   G   L
Sbjct: 3   ILLIEDDAETAAYVAKGLKEQGYVVDHAAEGREGLFLAAEGPYDVMIVDRMLP--GLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR A ++ P++ ++   S++  ++  ++G DD + KP    E+LARV A+ RR  
Sbjct: 61  AIVKTIRGAGTKTPILFLTTRSSIEDRVEGLEAGGDDYLVKPFAFSELLARVQALARRPP 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++   +     + +    R     G    L   E ++LEYL+ N G+ V +T +   ++
Sbjct: 121 LADVTTQLRIADLELDLLTRTASRAGHSLDLKPLEFKLLEYLVRNAGRIVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F    + NVVE++IS+LR K+    G D + + R  GY +
Sbjct: 181 D-FHFDPQTNVVETNISRLRAKVDRGFGCDLIHTVRGAGYML 221


>gi|254695359|ref|ZP_05157187.1| DNA-binding response regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261215731|ref|ZP_05930012.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260917338|gb|EEX84199.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 225

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++          +G  ++  + L+       SAR D+  ++  L     + L
Sbjct: 3   IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPD--GQGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y 
Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F+  VE N +E H+S+LRKKL    G   +++ R +GY +
Sbjct: 180 SFNTEVESNTMEVHVSRLRKKL----GHAIIETVRGIGYRL 216


>gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus D30]
 gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 930918-3]
 gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus D139]
 gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus H19]
 gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus
           132]
 gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754]
 gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8819]
 gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796]
 gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus]
 gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus subsp. aureus MW2]
 gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus]
 gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 930918-3]
 gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus D30]
 gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus D139]
 gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus H19]
 gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus ST398]
 gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 04-02981]
 gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754]
 gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8819]
 gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796]
 gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 241

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPE--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++   +R H Q P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 63  QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 123 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 233


>gi|326772270|ref|ZP_08231555.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326638403|gb|EGE39304.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 238

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++           G+S +          L  +   DV  ++  L   G   +E
Sbjct: 13  LVVDDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGLP--GMDGVE 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++        L     G DD + KP   RE++AR+  + RR +  
Sbjct: 71  VCRQLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAG 130

Query: 123 NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  A        G + +    R  E+      L R E  +L+ L  + G  + + Q+  A
Sbjct: 131 STGATAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDA 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++G  D   ++++V+ HI+ LRKKL  +      V + R +GY +
Sbjct: 191 VWGE-DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234


>gi|238758863|ref|ZP_04620036.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC
           35236]
 gi|238702971|gb|EEP95515.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC
           35236]
          Length = 239

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +              +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGLEAVATVRHTPPAIILLDLMLP--GSDGIT 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR   +
Sbjct: 73  ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCHQA 132

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +A ++ P+ +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 133 REQATDSAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              V +  ++SHI  LR+KL +  G  P + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLESLDGDKPFIRAVYGMGYRWE 232


>gi|154687043|ref|YP_001422204.1| PhoP [Bacillus amyloliquefaciens FZB42]
 gi|154352894|gb|ABS74973.1| PhoP [Bacillus amyloliquefaciens FZB42]
          Length = 239

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 100/232 (43%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E    L  +   D+  ++  L       +
Sbjct: 5   ILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALELAENENPDLIVLDVMLPKV--DGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R     VP++ ++        +   + G DD + KP   RE+ ARV AI RR  
Sbjct: 63  DVCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRAD 122

Query: 121 VS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +S          + +   G +++  +  +   + E   L  +E  +L YL  ++G+ + +
Sbjct: 123 ISSLSQGREEEKDGQILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
             + SA++  +D A +  +V+ HIS LR K+ +       + + R LGY ++
Sbjct: 183 DLLLSAVWN-YDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLE 233


>gi|292487424|ref|YP_003530296.1| phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora CFBP1430]
 gi|292898668|ref|YP_003538037.1| phosphate regulon two-component response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291198516|emb|CBJ45624.1| phosphate regulon two-component response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291552843|emb|CBA19888.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora CFBP1430]
 gi|312171528|emb|CBX79786.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora ATCC BAA-2158]
          Length = 229

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +          +    L      D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAADYDSALSLLIEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 IAPMAVEEVIEIQGLTLDPSSHRVMSGTQPLDMGPTEYKLLHFFMTHTERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 IWGT-NVYVEDRTVDVHIRRLRKALELSGHDRMVQTVRGTGYRF 225


>gi|260888658|ref|ZP_05899921.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Selenomonas sputigena ATCC 35185]
 gi|330839931|ref|YP_004414511.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260861590|gb|EEX76090.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Selenomonas sputigena ATCC 35185]
 gi|329747695|gb|AEC01052.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 234

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +  S+E  +  +  E    +   D+  ++  L        
Sbjct: 4   ILIIEDDKAIAELERDYLEANDFSVEIISDGKNGEEKALAEDFDLILLDLMLPSA--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR     P++ +S        +     G DD + KP    E+ ARV A   R + 
Sbjct: 62  AVCRAIRQKKDTPILMVSARQEEIDKVRGLGLGADDYIVKPFSPNELTARVKAHIARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   ++   TG + +  + R     G+   L RRE  +L +   N G   +K ++F
Sbjct: 122 LTQKTVQKSDSIFTGGLEICPEARRVFTDGKEVSLTRREFDLLLFFAENPGIAFSKDKLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I+G+ D   +   V  HI+++R+K+         +++   +GY  
Sbjct: 182 DRIWGM-DALGDTATVMVHINRIREKIEPNPATPVYIETVWGVGYRF 227


>gi|260102098|ref|ZP_05752335.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|260084098|gb|EEW68218.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
          Length = 238

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 98/231 (42%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L  K    L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   +    +   + G DD V KP  +RE++ARV A  RR  +
Sbjct: 63  EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      ++   + G + +  D    E  G    L  RE  +L YL  + G+ + +
Sbjct: 123 VKKAEADNQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  + +LR+K+ +  +    + ++R +GY +
Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYV 232


>gi|269836941|ref|YP_003319169.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786204|gb|ACZ38347.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 240

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            V+++D   +         ++G  +E         E L    + +   I   L+      
Sbjct: 4   IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R     P++ ++   +    +   + G DD + KP   RE+ ARV+AI RR++
Sbjct: 64  LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +            R + G + +    R+   +G+   L  +E  +L  L AN G+  ++ 
Sbjct: 124 MMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
            +   ++G  D    +  V++HI +LRKKL       + + +   +GY  +
Sbjct: 184 YLLHRVWGE-DYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233


>gi|42780675|ref|NP_977922.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
 gi|65318844|ref|ZP_00391803.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118477032|ref|YP_894183.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|170689223|ref|ZP_02880419.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
 gi|196036824|ref|ZP_03104213.1| DNA-binding response regulator ResD [Bacillus cereus W]
 gi|217959052|ref|YP_002337600.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
 gi|218902686|ref|YP_002450520.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
 gi|229138269|ref|ZP_04266864.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
 gi|229155143|ref|ZP_04283255.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
 gi|229602173|ref|YP_002865982.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
 gi|254682360|ref|ZP_05146221.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721256|ref|ZP_05183046.1| DNA-binding response regulator ResD [Bacillus anthracis str. A1055]
 gi|254733775|ref|ZP_05191489.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254740534|ref|ZP_05198225.1| DNA-binding response regulator ResD [Bacillus anthracis str. Kruger
           B]
 gi|254753923|ref|ZP_05205958.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Vollum]
 gi|254759019|ref|ZP_05211046.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Australia 94]
 gi|300117496|ref|ZP_07055286.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
 gi|42736595|gb|AAS40530.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
 gi|118416257|gb|ABK84676.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|170666778|gb|EDT17545.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
 gi|195990553|gb|EDX54532.1| DNA-binding response regulator ResD [Bacillus cereus W]
 gi|217068293|gb|ACJ82543.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
 gi|218535347|gb|ACK87745.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
 gi|228628270|gb|EEK84985.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
 gi|228645161|gb|EEL01398.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
 gi|229266581|gb|ACQ48218.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
 gi|298725331|gb|EFI65983.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
 gi|324325592|gb|ADY20852.1| DNA-binding response regulator ResD [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 250

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++  +   G+  +
Sbjct: 19  ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMP--GKDGI 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 77  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 136

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 137 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 196

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 197 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 247


>gi|295402032|ref|ZP_06811993.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110946|ref|YP_003989262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975923|gb|EFG51540.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216047|gb|ADP74651.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 223

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G       S         + + D+  ++  +        
Sbjct: 4   ILLVDDETRMLELLALYLSPKGYHCVKCESGLAAVQYLENHKADLVLLDIMMPE--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP+I ++        +   + G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  ETCKRIREFSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLRRSVG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             ++ E   +    D      Q E   L  +E  IL   + +  +  ++ QI  +++G +
Sbjct: 122 KRSKIEFQGLVWDEDEHKTHYQNEPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
           +   EE  ++SH+  +R+KLR         + +   +GY  +
Sbjct: 181 NANTEERTIDSHVKNIREKLRQVGFPIDQFLQTVWGVGYKWE 222


>gi|227509078|ref|ZP_03939127.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511985|ref|ZP_03942034.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524971|ref|ZP_03955020.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227084793|gb|EEI20105.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227087883|gb|EEI23195.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227191465|gb|EEI71532.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 229

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   +  ++  E    L++ +   +  ++  +   G   
Sbjct: 3   ILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGNEALTKLRTESDIGLMILDIMMP--GMNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQ+P+I +S        +    SG DD V KP +  E++ARV ++ RR +
Sbjct: 61  IEVIKEVRKDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTE 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  + GP+ +  D  +   + G    L   E  IL  L ++  +  +  +IF
Sbjct: 121 EHVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY I+
Sbjct: 181 ERVW-RQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227


>gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium intracellulare ATCC 13950]
          Length = 228

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       L +S R D   ++  +       L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELIASDRPDALVLDVMMPR--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +       +   + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 121 PEDEAESVAMKFSDLTLDPVTREVTRGERRISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGESRLIHTVRGVGYVL 223


>gi|291298248|ref|YP_003509526.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567468|gb|ADD40433.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 233

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D        +G  +              S R D+  ++  L       +
Sbjct: 8   ILVVEDDPNVSDVVRRYLEREGYRVTLAADGLSGLAEYRSGRPDLVVLDLMLP--KLPGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S+VP+I ++        +     G DD ++KP   RE++ RVAA+ RR   
Sbjct: 66  EVCRALRIESEVPVIMLTALGDESDRIAGLSVGADDYLSKPFSPRELVLRVAAVLRRAVR 125

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +    +   G + +    R   ++G    L  RE  +LE+L+ + G+  ++ ++  
Sbjct: 126 TEAAERPGEQLTDGELILDPGSRVATLRGTKLNLTVREFDLLEFLLRHPGQVFSRAELLE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            ++       +++ V  H+ +LR+K+ +       + +   +GY  +
Sbjct: 186 RVWDWT--FGDQSTVTVHVRRLREKIEDAPAQPKRLVTVWGVGYRFE 230


>gi|15887773|ref|NP_353454.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325291858|ref|YP_004277722.1| Phosphate regulon transcriptional regulatory protein phoB
           [Agrobacterium sp. H13-3]
 gi|15155345|gb|AAK86239.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325059711|gb|ADY63402.1| Phosphate regulon transcriptional regulatory protein phoB
           [Agrobacterium sp. H13-3]
          Length = 227

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E        D+  ++  L   G   +
Sbjct: 5   IAVVEDEEALSVLLRYNLEAEGYDVDTIPRGDEAEIRLQERIPDLLILDWMLP--GVSGI 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +    +G DD V KP    E++ARV A+ RR
Sbjct: 63  ELCRRLRMRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    ++  + G I +  +      +     L   E R+LE+LM + G+  +++Q+   
Sbjct: 123 ARPEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMTSPGRVFSRSQLLDG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 183 VWG-HDIYVDERTVDVHVGRLRKALNFSHMQDVIRTVRGAGYSME 226


>gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1]
 gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1]
 gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 225

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++I+D   +          +G + E                 D+  ++  L       
Sbjct: 6   LVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV--LDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S  P+I ++    +Q  ++  DSG DD + KP    E+LARV A  RR+ 
Sbjct: 64  LEVARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVN 123

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +  DGR+    G    L  +E  +LE L  N GK  ++ +I   ++ 
Sbjct: 124 PAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     NVV+ +I  LR+KL        + + R +GY +
Sbjct: 183 -PEYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222


>gi|307332098|ref|ZP_07611186.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306882240|gb|EFN13338.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 246

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 23  LVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAEAWQPDLLVLDVMLP--GFDGLE 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 81  VCRRVQARRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 140

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+G    L   E  +L  L       +++ Q+ 
Sbjct: 141 ALAAHTPRSGILRLGELEIDHAQRRVRVRGSDVHLTPTEFDLLVCLANTPRAVLSREQLL 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|220924050|ref|YP_002499352.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219948657|gb|ACL59049.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 225

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +++     E   +L  +   D   ++  L  + + V 
Sbjct: 3   LLVVEDDRDLNRQVVTALEQAGYAVDKAFDGEEGAFLGETEPYDCIILDMGLPKQ-DGVT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L    RA  + P+I ++        ++ FD+G DD V KP H  E+LARV AI RR   
Sbjct: 62  VLSGWRRAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y  
Sbjct: 122 HASSQISAGPVTLDTRSGRVFVDGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + N +E  + +LRKKL      D + + R LGY ID
Sbjct: 182 -DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLID 217


>gi|332686662|ref|YP_004456436.1| DNA-binding response regulator [Melissococcus plutonius ATCC 35311]
 gi|332370671|dbj|BAK21627.1| DNA-binding response regulator [Melissococcus plutonius ATCC 35311]
          Length = 240

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 107/237 (45%), Gaps = 24/237 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++I+D   V +     F ++G       +G   LE   +L++  + D+  ++  L     
Sbjct: 4   LMIEDNESVVEMMQMFFLNEGWELAFQYDGKAGLEA--FLENPKKWDMVLLDLNLPT--I 59

Query: 59  KVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             + + R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++R
Sbjct: 60  DGMTVCREIRKVSNTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHR 119

Query: 118 RLKVSNNRAE------------TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANR 164
           R +V+N   E            T   ++ +  R+  +  ++   L  +E  +L  L    
Sbjct: 120 RFEVNNQMIEKKDDSTEDFDVVTEHFKLSTKTREAYLNNQLIEGLTPKEFDLLYTLAKKP 179

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY +D
Sbjct: 180 RQVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKLD 234


>gi|332526126|ref|ZP_08402264.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332109969|gb|EGJ10597.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 237

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +         G  +    + +  +        D+  ++  L   G+  L+
Sbjct: 5   LVVEDESAIAELISINLRHAGYEVTVAATADQAQAAVDRVLPDLVLVDWMLP--GQSGLQ 62

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  RA +   ++P+I ++        +   D+G DD + KP   +E+LAR+ A+ RR 
Sbjct: 63  LARRWRAETRTREIPIIMLTARNEEADKIAGLDAGADDYLTKPFSPKELLARMRAVLRRK 122

Query: 120 KVS--NNRAETGPIRVFSDGRDPE--VQGE--VFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++  E   +R+    R     V GE     +   E R+L +LM +  +  ++ Q+
Sbjct: 123 APEALDSPVEVAGLRLDPATRRVTRRVDGELREVKMGPTEFRLLHFLMTHPERVHSRAQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G     +EE  V+ H+ +LR+ L        +++ R  GY +
Sbjct: 183 LDRVWGDH-VFIEERTVDVHVKRLREALAPAQCSALIETVRGAGYRM 228


>gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|52140967|ref|YP_085862.1| response regulator [Bacillus cereus E33L]
 gi|51974436|gb|AAU15986.1| response regulator [Bacillus cereus E33L]
          Length = 230

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDFSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G++  L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|306845545|ref|ZP_07478114.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|306273866|gb|EFM55693.1| DNA-binding response regulator [Brucella sp. BO1]
          Length = 225

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++          +G  ++  + L+       SA  D+  ++  L     + L
Sbjct: 3   IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESASYDLVLLDLMLPD--GQGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y 
Sbjct: 121 GNPNPLIEIGGLQIDLAVKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E H+S+LRKKL    G   +++ R +GY +
Sbjct: 180 SFDTEVESNTMEVHVSRLRKKL----GHAIIETVRGIGYRL 216


>gi|304318103|ref|YP_003853248.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779605|gb|ADL70164.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 224

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 104/223 (46%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +IDD   ++D  +     +G +++ F++   E+ L++  ++    +   ++  G   
Sbjct: 4   LIYIIDDDKNIRDLMVKYVEKEGYNVKAFDN--AEDVLENFNKDKPDMLILDIMMPGMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + IR  S VP+I +S        +   + G DD + KP   RE++AR+ +++RR+K
Sbjct: 62  YELCKEIRKISDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVK 121

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +N      I +  D R     GE       E  ++++L  N  K   + Q+   ++
Sbjct: 122 MPKRSNEIRIKDIVIVPDERKVLYNGEEMSFTSMEFELIQFLAKNANKAFTREQLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +D   E   V+  + ++RKKL++      + +    GY ++
Sbjct: 182 -KYDSFTETRAVDDMVKRVRKKLQSYGCEFNISTIWGYGYKVE 223


>gi|210617002|ref|ZP_03291337.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
 gi|210149525|gb|EEA80534.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +D   +  F + E       + + D++ ++  L        
Sbjct: 3   ILVVDDEKEIADVIALYLQNDEYQVHKFYTGEEALNCIETTKIDLALLDVMLPD--IDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P+I ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 61  EILKRIREKYTFPVIMLTAKVDYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYTQ 120

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K+  +  +   + +     +         L   E  IL  L  NRGK ++  ++F
Sbjct: 121 YNDGGKIEGDVIDFAGVLLNRTSHECIFNERSLTLTPIEFDILWLLCENRGKVISSEELF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             ++         N V  HI  LR+K+    G  D + +   +GY ++
Sbjct: 181 RKVWKEEYYKNSNNTVMVHIRHLREKMSGPTGKSDFIKTVWGVGYKVE 228


>gi|239930403|ref|ZP_04687356.1| two-component systen response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438761|ref|ZP_06578151.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341656|gb|EFE68612.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 246

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E   +++  + L+ +A      +   +       L
Sbjct: 15  ILIVDDEPAVREALQRSLAFEGYDTEV--AVDGADALEKAASYRPDLLVLDIQMPRMDGL 72

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
              R IR+     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 73  TAARRIRSAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     S++    G + +    R+    G    L R E  +LE  MA+  + + + 
Sbjct: 133 YAAAVAASAESDDVLAFGDLSMNLATREVVRGGRPVELTRTEFTLLEMFMAHPRQVLTRE 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 193 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 240


>gi|189023209|ref|YP_001932950.1| Response regulator receiver [Brucella abortus S19]
 gi|237817505|ref|ZP_04596495.1| Protein petR [Brucella abortus str. 2308 A]
 gi|189021783|gb|ACD74504.1| Response regulator receiver [Brucella abortus S19]
 gi|237787260|gb|EEP61478.1| Protein petR [Brucella abortus str. 2308 A]
          Length = 258

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 135/225 (60%), Positives = 168/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 32  MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 91

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 92  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 151

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 152 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 211

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 212 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 256


>gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
 gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
          Length = 235

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 97/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G   E   + + E  L+ +  E+   I   ++  G   +
Sbjct: 5   ILIVDDEDRIRKLAKMYLEREGY--ETVEAEDGERALELALSENFHCILLDIMLPGMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ + +R     P+I ++        ++ F+ G DD + KP   RE++ RV AI RR + 
Sbjct: 63  QVCKRLREEKSTPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAILRRSQS 122

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D        +   L  +E  +L +L  +  K   + Q
Sbjct: 123 TMFLQQEAHAKDLIVFDSLVIDNDAHRVLADNKEVNLTPKEYELLLFLAKSPDKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +    + + +   +GY  + 
Sbjct: 183 LLKDVW-HYEFYGDLRTVDTHVKRLREKLNKVSPHAANMIHTVWGVGYKFEV 233


>gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
 gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E           D+  ++  L   G    
Sbjct: 4   ILLIEDDISIAELQRDYLEINKFRVDIQHSGEEGLQKALQEHYDLIILDIMLP--GVNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQIRAVKNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLERYER 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   N      I +    R   + GE  P   +E  +L +L+ +  + ++K Q++ 
Sbjct: 122 LAGKQTQTNTIFVHGITIDKSARKVYIDGEETPFTTKEFDLLVFLLMHPNQVLSKEQLYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+GL + A + + V  HI K+R K+  +      +++    GY  + 
Sbjct: 182 KIWGL-ESAADVSTVTVHIRKIRGKIEGDPAQPKFLETVWGAGYRFNV 228


>gi|258593550|emb|CBE69891.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family) [NC10
           bacterium 'Dutch sediment']
          Length = 246

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D A + +  I     +G  +         + L  +A+ DV  ++  L       LE
Sbjct: 9   LLIEDDASIAEPLIFGLRREGFHVLHAGDGLQGKALALTAKPDVVLLDIMLP--KLSGLE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           +  +IR  S VP++ ++        +     G DD + KP   +E++AR+ AI RR +  
Sbjct: 67  VCELIRRESVVPIVMLTAKGQELDRVRGLQGGADDYIVKPFSFQELVARIQAILRRRQLD 126

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +R     I +    R+   + +   L  RE  +L  LM + GK +++ +I
Sbjct: 127 RGDALPSGDRDRIAITSIVIDRVAREVWRKKKKLELSWREFELLWLLMEHVGKALSRHEI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              I+G  D   +   ++ +I  LR+K+  N    + + + R  GY  
Sbjct: 187 LDRIWGE-DWVGDPKTLDVYIRWLREKIEKNPSAPEYIQTVRGYGYRF 233


>gi|228987786|ref|ZP_04147896.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771944|gb|EEM20400.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 230

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLMIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 18/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++++D       YIA    D  +L G+ +    + ++ L+ +   D   I   +   G 
Sbjct: 4   ILIVEDDP-----YIAELQKDYFALHGYEAEICHDGQDGLKQALSGDYDLIILDIQLPGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ + IR    VP++ +S        +  F  G DD V KP    E++AR  A   R
Sbjct: 59  SGFEICKTIRERLDVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHLAR 118

Query: 119 LKV--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +          ++      + +        V  +   L  +E  +L ++  N  +  +K
Sbjct: 119 YERFKSGQKISPDDSLRIRELTINPSSHRVFVHEQEVFLTAKEFEVLVFMATNPNRVFSK 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            Q+F  I+GL D   +   V  HIS++R+KL  +      +++    GY  
Sbjct: 179 DQLFEKIWGL-DSNGDIATVTVHISRIREKLEADPSNPQFIETVWGAGYRF 228


>gi|254448586|ref|ZP_05062045.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium HTCC5015]
 gi|198261775|gb|EDY86061.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium HTCC5015]
          Length = 236

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +++        +G   +E  +  E E+ +      D+  ++  L   G   
Sbjct: 15  ILVVEDEQAIREMIGFALRREGYHFIEAGSVAEAEDAIAEQV-PDLMLVDWMLP--GTSG 71

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E  R  +       VP+I ++        +   D+G DD V+KP   RE++AR+ A+ R
Sbjct: 72  VEFVRHTKRDELTQDVPVIMLTARTEEDDKIVGLDAGADDYVSKPFSPRELIARIRAVLR 131

Query: 118 RLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R+  ++ +  E G + +  D            L   E R+L++ M++  +  ++TQ+   
Sbjct: 132 RIGSADGQLLEVGGLAMDVDSHRVTYGDSNLDLGPTEYRLLQFFMSHVDRVYSRTQLLDH 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ H+ +LRK L        V + R  GY  
Sbjct: 192 VWGRS-AFVEERTVDVHVLRLRKALAPYGCDKLVQTVRGAGYRF 234


>gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 14/228 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       ++   +   N L+  E L      D+  ++  +   G    E
Sbjct: 7   LIVDDEINITELISVNLEENFNVVCCHNGLDAVE-LAKKELPDIILLDIMIP--GIDGFE 63

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           + R IR   A  ++P+I ++        +     G DD + KP    E+LAR+ A+ RR 
Sbjct: 64  VCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDAVLRRS 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S+N  + G I + +D  + + +G V  L  RE ++L+ L  N+G  V++  +
Sbjct: 124 DMISASNTSDNIMQIGDIEIDTDKYEVKKKGTVIELTLREFKLLQTLAKNKGNLVSREVL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            S ++G  +   +   ++ HI KLRKKL +   F   +++ R LGY I
Sbjct: 184 LSEVWGCGN-LGDSRTLDVHIRKLRKKLEDNDKFPKYIETVRGLGYMI 230


>gi|171779215|ref|ZP_02920186.1| hypothetical protein STRINF_01063 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282271|gb|EDT47698.1| hypothetical protein STRINF_01063 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 225

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  +      G   +GF   +      S  + D+  ++  L   G   
Sbjct: 1   MIYCVEDDDDIRELMLYTLKTAGFEAQGFPDGDDFWQAISIQQPDLILLDIMLP--GSDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L +   +        +P+I  +   +    +   D G DD + KP    E+++R+ A+ R
Sbjct: 59  LAILEKLEQTPTTAGIPVIMATAKGTEYDKVKGLDMGADDYLVKPFGMMEMISRIKAVLR 118

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +    +   + G + +       +   +V  L  +E  +L  L+ N  +   +  +  
Sbjct: 119 RSEKGHVSKILKLGNLSLDVQNYVVKKDNQVIHLTLKEFELLALLLKNPNRVFTRQDLLK 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D   E   V+ HI  LR KL +      + + R +GY ++
Sbjct: 179 QVWG-DDFLGETRTVDVHIGTLRTKLGDAGH--YIQTIRGVGYRLE 221


>gi|104784065|ref|YP_610563.1| DNA-binding response regulator CreB [Pseudomonas entomophila L48]
 gi|95113052|emb|CAK17780.1| two-component response regulator CreB [Pseudomonas entomophila L48]
          Length = 226

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + + D  +     DG S E  +        Q     D+  ++  L        
Sbjct: 4   ILIVEDESAIADTLVYALQADGHSTEWVSLGSAAVEQQRLRPADLVILDIGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R +R  S+VP++ +S   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCRQLRRFSEVPVMFLSARDAEIDRVLGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                AE  P ++ +       +G+   L R E R+L+ L+    +  ++ Q+   + G+
Sbjct: 122 RPEPVAEVAPFQLDTLAMRIVYRGQPLALTRHEFRLLQCLLEQPRRVFSREQLLDGL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             +   E  ++SHI  LR KLR      +P+ + R LGYS
Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRLVASEAEPIQTHRGLGYS 220


>gi|66731643|gb|AAY52009.1| VanR [Paenibacillus apiarius]
          Length = 231

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  F     +E L+   + D+      ++  G   L
Sbjct: 5   ILVVDDEHEIADLVELYLKNENYTV--FKYYTAKEALECIDKTDLDLAILDIMLPGASGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K 
Sbjct: 63  AICQKIRDKHTYPIITLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E          + +  +  +  +  +   L   E  IL  L  N+G  V+  Q+F
Sbjct: 123 YNGVTEQNENVIVHSGLVININTHECFLNEKQLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+G    +   N +  HI  LR+K+ + +     + +   +GY I+
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIE 230


>gi|52080826|ref|YP_079617.1| two-component response regulator ResD [Bacillus licheniformis ATCC
           14580]
 gi|52786197|ref|YP_092026.1| hypothetical protein BLi02458 [Bacillus licheniformis ATCC 14580]
 gi|319645215|ref|ZP_07999448.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
 gi|52004037|gb|AAU23979.1| two-component response regulator ResD [Bacillus licheniformis ATCC
           14580]
 gi|52348699|gb|AAU41333.1| ResD [Bacillus licheniformis ATCC 14580]
 gi|317393024|gb|EFV73818.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
          Length = 240

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +   +E   + +  E +  +   D   I   L+  G   +
Sbjct: 9   ILVVDDEARIRRLLKMYLERENYKIEEAENGD--EAIDKALGNDYDLILLDLMMPGTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 67  EVCRQVRDKKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 126

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++         N      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 127 TSYLNTDTTAKNVLVFSHLSIDHDAHRVMADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPKAAKKIVTVWGVGYKFEV 237


>gi|78045890|ref|YP_362065.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927350|ref|ZP_08188603.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325928590|ref|ZP_08189775.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78034320|emb|CAJ21965.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325541023|gb|EGD12580.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325542273|gb|EGD13762.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 227

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 3/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G S +             + + D+  ++  L  +G   L+
Sbjct: 11  LIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRG--GLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +  
Sbjct: 69  ICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRHD 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            + A    + +  D     V G    L + E R+L  L A  G+  ++ Q+   +Y    
Sbjct: 129 PHGAPAPGLHIDEDACRASVDGRALDLTQVEFRLLRTLAAAPGRVYSREQLMGRLY-ADH 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V +  V+SH+  LR+KL +  G D V S    GY  +
Sbjct: 188 RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGYRFE 226


>gi|319787643|ref|YP_004147118.1| PhoB family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466155|gb|ADV27887.1| two component transcriptional regulator PhoB, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 229

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGDYEPVHAGDAREAQAAIADRVPDMILLDWMLP--GTSGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R  R  +   +VP+I ++        +   ++GVDD V KP   RE+LAR+ A+ RR
Sbjct: 63  ELARRWRREALTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSSRELLARIRAVMRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +     G +R+               +   E R+L + M +  +  ++ Q+   
Sbjct: 123 SREDDEDGSVAAGNLRIDGAAHRVFAGDAPVAIGPTEYRLLHFFMTHPDRVYSRAQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LR+ L        V + R  GY  
Sbjct: 183 VWGGS-VYVEERTIDVHIRRLRRTLEPFGADGMVQTVRGAGYRF 225


>gi|226324180|ref|ZP_03799698.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
 gi|225207729|gb|EEG90083.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  +           D+  ++  L   G    
Sbjct: 4   ILIVEDEESIADLEKDYLELSGFEVEVANDGQTGLDKALFGDFDLVILDLMLP--GVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICRKVRAEKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++ +  R   V G       +E  +L +L ++      K ++F
Sbjct: 122 LIGSAVEENKVIEIRGLKIDTTARRVWVNGVEKNFTTKEFDLLTFLASHPNHVYTKDELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 SEIWDM-ESIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRF 227


>gi|329847724|ref|ZP_08262752.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
 gi|328842787|gb|EGF92356.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
          Length = 229

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G         +    +    + D+   +  +       +
Sbjct: 5   IIIAEDEDALSTLLHYNLEKEGYETAMAADGDEALMMIKERQPDLLVCDWMMPKV--SGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R+ S    +P++ ++        +   D+G DD V KP    E LAR+ A+ RR
Sbjct: 63  EVCRRLRSASPTRNLPIVMLTARSEESDRIRGLDTGADDYVVKPFSMVEFLARIRAVLRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++   S+++ E G I V       +  G    L   E ++L++ M    +  ++ Q+  A
Sbjct: 123 IRPGLSDDKVEFGEISVDRLSHRVQRCGRDIHLGPTEYKLLDHFMQYPKRVFSREQLLDA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  VE   V+ HI +LRK L     +DP+ + R  GYS+D
Sbjct: 183 VWGN-DVYVEARTVDVHIGRLRKALNKGDEYDPIRTVRSAGYSLD 226


>gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 225

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++I+D   +        G +G + +                 D+  ++  L       
Sbjct: 6   LVLVIEDEKEIARFIELELGAEGYTTDVAYDGVTGLSKFREVAPDLVVLDLMLPV--LDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S  P+I ++    +Q  ++  DSG DD + KP    E+LARV A  RR+ 
Sbjct: 64  LEVARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVN 123

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +  DGR+    G    L  +E  +LE L  N GK  ++ +I   ++ 
Sbjct: 124 PAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     NVV+ +I  LR+KL        + + R +GY +
Sbjct: 183 -PEYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222


>gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 228

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G ++    +        +  R  +  ++  L   G   L
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYNVTIKYNGTEGLNAAAEGRYSLVLLDVMLP--GLSGL 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   Q  P+I ++   S+   +   D G +D V KP    E+LAR+    R+  
Sbjct: 64  EVLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRVALRQNG 123

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +T      +RV    R+     +   L  RE  +L Y++ +  + + + QI ++
Sbjct: 124 TKTEDIDTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILNS 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  +RKKL        + + R +GY+I
Sbjct: 184 VWG-FDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTVRGVGYAI 226


>gi|229182111|ref|ZP_04309403.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
 gi|228601362|gb|EEK58891.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
          Length = 281

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEKV 60
           ++++D   + D       ++  ++  F     +E L+   +   D++ ++  L       
Sbjct: 56  LIVEDEREIADLVELYLKNENYTV--FKYYTAKEALECIDKNVLDLAILDIMLPDV--SG 111

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K
Sbjct: 112 LTICQKIRDKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYK 171

Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N       N      + +     +  +  +   L   E  IL  L  N+G  V+  Q+
Sbjct: 172 KYNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQL 231

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           F  I+G    +   N +  HI  LR+K+ + +     + +   +GY I+
Sbjct: 232 FHEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIE 280


>gi|15596376|ref|NP_249870.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAO1]
 gi|107100628|ref|ZP_01364546.1| hypothetical protein PaerPA_01001654 [Pseudomonas aeruginosa PACS2]
 gi|116049111|ref|YP_792087.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892857|ref|YP_002441726.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           LESB58]
 gi|254234312|ref|ZP_04927635.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           C3719]
 gi|254239547|ref|ZP_04932869.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192]
 gi|296390450|ref|ZP_06879925.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAb1]
 gi|313106153|ref|ZP_07792406.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           39016]
 gi|9947104|gb|AAG04568.1|AE004548_2 two-component response regulator PhoP [Pseudomonas aeruginosa PAO1]
 gi|115584332|gb|ABJ10347.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166243|gb|EAZ51754.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           C3719]
 gi|126192925|gb|EAZ56988.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192]
 gi|218773085|emb|CAW28897.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           LESB58]
 gi|310878908|gb|EFQ37502.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           39016]
          Length = 225

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++     E   +  S    D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGLP--GMSGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R      P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  E GP+ +  + +   V+ +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R  GY
Sbjct: 180 PDDEERDANVIEVLVGRLRRKLEACGGFKPIDTVRGQGY 218


>gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5]
 gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5]
          Length = 228

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++    E L+++A    S +   ++  G   L
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYGVTIKHNGT--EGLEAAAEGGHSLVLLDVMLPGLSGL 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   Q  P+I ++   S+   +   D G +D V KP    E+LAR+ A  R+  
Sbjct: 64  EVLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNG 123

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         +RV    R+     +   L  RE  +L Y++ +  + + + QI S+
Sbjct: 124 TKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSS 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  +RKKL        + + R +GY+I
Sbjct: 184 VWG-FDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226


>gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 242

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 109/226 (48%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E         R D+  ++  L       +
Sbjct: 6   ILIVDDEPSISMLIEFNLKLAGYEVRCVHDGEAVFEHLKPFRPDLIVLDLMLP--KMDGI 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R  +  VP++ ++    +   +   D+G DD + KP   +E+++R+ AI+RR++
Sbjct: 64  QVCRELRRQNNAVPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFRRVQ 123

Query: 121 V---SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               SN+    E G ++V+ + R+  ++G++  L  +E  +L +L  +RGK +++ Q+  
Sbjct: 124 ALPGSNDTVVYEYGRLKVYPEQREVRIEGKLIELTPKEFELLVFLCRHRGKVLSRQQLLH 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++  +    +  +V+ HIS LR K+  N    + + + R +GY +
Sbjct: 184 GVWD-YHFLGDTRIVDVHISHLRDKIEKNARTPEYIITVRNVGYKL 228


>gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 227

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D             ++G +++         W  +    DV  ++  L        E
Sbjct: 4   LVVEDETRTAALLRRGLAEEGFAVDVVADGADAVWQATEITYDVIVLDLMLPS--LDGFE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  +  P++ +S   ++   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  VCRRLRAAGRWSPVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRRGAH 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E   +R+   GR     G    L  +E  +LEYLM + G+ + +T I   ++  
Sbjct: 122 ERPVVLEVDGLRLDPAGRTVSRDGVPLDLSPKEFALLEYLMRHPGEALRRTAILEHVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F      NVV+ +++ LR+K+    G   +++ R  GY +
Sbjct: 181 FAYDGTSNVVDQYVAYLRRKIDKPFGTSQLETVRGAGYRL 220


>gi|225628429|ref|ZP_03786463.1| Protein petR [Brucella ceti str. Cudo]
 gi|225616275|gb|EEH13323.1| Protein petR [Brucella ceti str. Cudo]
          Length = 258

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 134/225 (59%), Positives = 167/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 32  MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 91

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+  L+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 92  HRLPARIRERCKAPVIAVNDRPSLEHILELFQSGVDDVVRKPVHVREILARINAIRRRAG 151

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 152 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 211

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 212 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 256


>gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes]
 gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes]
 gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes]
 gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes]
 gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes]
 gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes]
 gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 225

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  +   G      ++G  ++     E           D+  ++  L        
Sbjct: 4   LLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLP--KLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S +P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 62  SVCREIRTFSNIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  + G + +    R    +G+   L  +E  IL  L +N GK   K ++   +
Sbjct: 122 PYTKKKDEIKRGELYISIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G FD   + N V  H+ KLR+K+ +       + +K   GY +
Sbjct: 182 WG-FDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYM 224


>gi|254386776|ref|ZP_05002067.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345612|gb|EDX26578.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 246

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 92/227 (40%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             +   ++  ++  L   G   LE
Sbjct: 22  LVVEDDHTIADAISARLRAEGFQVQTAYDGPAAVAAAETWLPELLVLDVMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G + +    R   V  E   L   E  +L  L       +++ Q+ 
Sbjct: 140 TIAATAPRGATLRLGDLEIDHAQRRVRVHNEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA
           [Mycobacterium avium 104]
 gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104]
          Length = 228

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       + +S R D   ++  +       L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPR--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++          + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 121 PEDDAESVAMTFSDLTLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223


>gi|229017295|ref|ZP_04174199.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229023471|ref|ZP_04179968.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228737824|gb|EEL88323.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228743996|gb|EEL94094.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + L+      V      ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLEKEGF--QTYEAVDGLDALRRIEEVKVDMAILDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DLCYELRKYYDMPILMLTAKGETSQKIKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +  +  +     +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRNTFEVNAGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +L    + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLEVS 224


>gi|77411963|ref|ZP_00788293.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           CJB111]
 gi|77161989|gb|EAO72970.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           CJB111]
 gi|319745956|gb|EFV98239.1| phosphate regulon response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 225

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D A +++  +      G + +GF+S E           D+  ++  L   G+  
Sbjct: 1   MIYCVEDDADIREMMLYTLQMAGFTAQGFSSSELFWEAIQEKVPDLILLDIMLP--GDDG 58

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L +   +R   Q    P+I  +   S    +   D G DD + KP    E+++R+ A+ R
Sbjct: 59  LTILERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLR 118

Query: 118 RLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  +++A    G + +       +   E   L  +E  +L     N  +   + ++  
Sbjct: 119 RSRQVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLD 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G      E   V+ HI  LR KL        + + R +GY ++
Sbjct: 179 KVWGE-QFLGETRTVDVHIGTLRTKLGEDGY--LIATVRGVGYRLE 221


>gi|295702506|ref|YP_003595581.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294800165|gb|ADF37231.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 230

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +    E L      D   +   ++      L
Sbjct: 6   ILIVEDERKIARLIQLELEHEGY--ETGMAYTGTEGLAEFQEHDWDLLLLDVMLPELSGL 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R IRA+    P+I ++   +L   +   D G +D + KP    E+ AR+    R   
Sbjct: 64  EVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPA 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +      + G + V    R+   + E   L  +E  +L Y++ N+ + ++  Q+ 
Sbjct: 124 STSTAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G FD   + N+V  +I  LRKK+        + + R +GY +
Sbjct: 184 TNVWG-FDYYGDTNIVYVYIRYLRKKIDASFSTPYIQTVRGVGYML 228


>gi|293611083|ref|ZP_06693382.1| predicted protein [Acinetobacter sp. SH024]
 gi|292826735|gb|EFF85101.1| predicted protein [Acinetobacter sp. SH024]
 gi|325123407|gb|ADY82930.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter calcoaceticus PHEA-2]
          Length = 228

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   +           G  +  F+  +         + ++  ++  +       L +
Sbjct: 6   LVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMILDLMVPR--MDGLTI 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+   
Sbjct: 64  CRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLERKA 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I      
Sbjct: 124 EPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDSF 182

Query: 184 AVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
            V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 183 DVADRVIDSHIKNLRRKISEAAETGNRHEWIQAVYGVGYRFEY 225


>gi|257484069|ref|ZP_05638110.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331008186|gb|EGH88243.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 227

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLP--GRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 68  DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTSS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++     G ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 128 TDPHTSKG-LQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|169830175|ref|YP_001700333.1| transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
 gi|168994663|gb|ACA42203.1| Transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
          Length = 237

 Score =  235 bits (602), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +         + D+  ++  L  +    +
Sbjct: 5   ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKRVEEEQPDLMLLDIMLPKR--DGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R     P+I ++   S    +   + G DD V KP   RE++ARV A  RRL+ 
Sbjct: 63  EVCREVRKKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQV 122

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      +N    G + +  D      + E   L  RE  +L YL  + G+ + + 
Sbjct: 123 AAPVAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +   ++G +D   +   V+  I +LR+K+ +       + ++R +GY +
Sbjct: 183 HLLQTVWG-YDYLGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYL 231


>gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 224

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +  S++     E      + A  DV  ++  +  K    L
Sbjct: 3   ILIAEDERDLNKILAQRLIAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKK--DGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR  +  VP++ ++   S++  +   D+G +D + KP    E+LAR+  + RR +
Sbjct: 61  SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S +     G + V  D       G+   L  +E  +L Y++ N+G  +++ ++   ++ 
Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D A   NV++ +I  LRKK+        + + R  GY +
Sbjct: 181 -YDYAGGSNVIDVYIRYLRKKIDEPFEEKLIHTVRGAGYVL 220


>gi|307132025|ref|YP_003884041.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Dickeya dadantii 3937]
 gi|306529554|gb|ADM99484.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Dickeya dadantii 3937]
          Length = 273

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G         E  E         +  ++  L   G   L 
Sbjct: 47  LIVEDEPKLAQLLVDYLQASGYHTHWLTQGEEVEPWVREHPCQLILLDLMLP--GRDGLT 104

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I ++        L   + G DD + KP   RE++ARV  + RR +  
Sbjct: 105 LCRAIRGFSNVPIIMVTARTDEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 164

Query: 123 NNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + +  +       G    L   E R+L+ L A  G+  ++ Q+   +Y 
Sbjct: 165 HEPLPGDALPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 224

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 225 DY-RVVTDRTIDSHIKNLRRKLEMFDRETSFIRTVYGIGYRWE 266


>gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 248

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +  + +   +G   +     +  E + +++ ED   I   ++      +
Sbjct: 29  ILVVDDDPAIAEMLMIVLQGEGF--DTVVVGDGAEAVTAASNEDPDLILLDVMLPSMNGV 86

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           ++ R IR  S VP++ +S        +   +SG DD +NKP   +E++ARV A  RR  +
Sbjct: 87  DVCRAIRKTSGVPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQLRRREQ 146

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +    G + +   G   +  G+  PL   E  +L  L +   + + + ++   ++G 
Sbjct: 147 ATGDTIHVGDLVIDVPGHIVKRDGKEIPLTPIEFDLLTQLASRPKQVLTREELLREVWG- 205

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +  +  V+  HI++LR K+  +      + + R +GY I
Sbjct: 206 YKQPTDTRVLNVHINRLRIKVEKDHKNPKLIQAVRGVGYKI 246


>gi|169350865|ref|ZP_02867803.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
 gi|169292451|gb|EDS74584.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
          Length = 216

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++I+D   + +             +   + + E  L  +  +D   I   L+      
Sbjct: 1   MILIIEDEKNISNLLKLELTHANYECD--QAFDGESGLNKALNQDYELILLDLMLPRING 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R   Q P+I ++    +   ++    G DD + KP    E+LAR+ A+ RR+ 
Sbjct: 59  IEVCRQLRLKKQTPIIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRVS 118

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N     + G I +       + + E   L   E  +L  L+ N G  V K  I + ++
Sbjct: 119 NQNKSLKYKYGEIEIDVINHHVKFKDETITLTTTEFDLLSLLVQNGGNIVTKNDILNKVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +++ V  NVVE +I  LR KL        +++ R +GY +
Sbjct: 179 G-YEKNVSTNVVEVYIRYLRNKLAGIN----IETIRGIGYRL 215


>gi|229163529|ref|ZP_04291479.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           R309803]
 gi|228619911|gb|EEK76787.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           R309803]
 gi|324328428|gb|ADY23688.1| two-component response regulator ycbL [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 230

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|240145147|ref|ZP_04743748.1| phosphate regulon response regulator PhoB [Roseburia intestinalis
           L1-82]
 gi|257202825|gb|EEV01110.1| phosphate regulon response regulator PhoB [Roseburia intestinalis
           L1-82]
          Length = 223

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++       + G  +E F       + +   +   S I   ++  GE  L
Sbjct: 4   IYIVEDDINIREIERYALKNSGYEVEEFEG--SASFFKRLEKNIPSLILLDIMLPGEDGL 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++   IRA      VP+I ++   S    +   D G DD + KP    E+++RV A+ RR
Sbjct: 62  DILTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALLRR 121

Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               N  ++     I +  D     V G++  L  +E  +L+YLM N+G  +++ +I   
Sbjct: 122 TSRINEDSQLIHEDILMDMDKHAVTVAGQLCELTFKEFELLKYLMLNQGIVLSRDKIMDQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G F+   E   V+ HI  LR+KL    G   + + R +GY I+
Sbjct: 182 VWG-FEYEGESRTVDMHIKTLRQKLGAAGG--CIKTVRNVGYMIE 223


>gi|163736445|ref|ZP_02143864.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
 gi|163743309|ref|ZP_02150690.1| phosphate regulon transcriptional regulatory protein PhoB
           [Phaeobacter gallaeciensis 2.10]
 gi|161383497|gb|EDQ07885.1| phosphate regulon transcriptional regulatory protein PhoB
           [Phaeobacter gallaeciensis 2.10]
 gi|161390315|gb|EDQ14665.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
          Length = 229

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        DG  +    +   EE L     +    I    +      +E
Sbjct: 9   LVVEDELAQREVLAYNLEADGFRV--LRAEHGEEALLIVEEDMPDIIVLDWMMPNLSGIE 66

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++  +    +P+I +S        +   ++G DD V KP    E++ARV    RR+
Sbjct: 67  VCRRLKTRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRV 126

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S    R E   I + ++            L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPSTVGVRLEFDDIILDAETHKVSRAEAPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALTQHGGSDPVRTVRGAGYAL 228


>gi|289623891|ref|ZP_06456845.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648450|ref|ZP_06479793.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486910|ref|ZP_07004964.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158575|gb|EFH99641.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330868308|gb|EGH03017.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 227

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAKPPQLILLDIMLP--GRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 68  DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRSSS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S      G ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 128 SEPHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|120556501|ref|YP_960852.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120326350|gb|ABM20665.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 230

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++                        L    + D+  ++  L   G   +E
Sbjct: 7   LIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIIDKQPDLILLDWMLP--GTSGVE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++   A + +P+I ++        +   + G DD + KP   RE++AR+ A+ RR 
Sbjct: 65  LARRLKKEEATADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 124

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++  E   + +   G           +   E R+L++ M ++ +   ++Q+   +
Sbjct: 125 TPPGVDSPIEVDGLTLDPIGHRVTTVDGAINMGPTEYRLLQFFMTHQERVYTRSQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L ++     + + R  GY  
Sbjct: 185 WGG-NVYVEERTVDVHIRRLRKALGDRYDH-LIQTVRGTGYRF 225


>gi|188578983|ref|YP_001915912.1| two-component system regulatory protein (response regulator)
           required for AvrXa21 activity R2 (raxR2) [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188523435|gb|ACD61380.1| two-component system regulatory protein (response regulator)
           required for AvrXa21 activity R2 (raxR2) [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 223

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 5/218 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D A +++   A    +G +++     E   ++      DV  I+  L       +EL 
Sbjct: 2   VEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLP--KMSGMELI 59

Query: 65  RIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-S 122
           + +R    + P++ ++   S Q  ++    G DD + KP H  E+LARV A+ RR    S
Sbjct: 60  KALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAAGWS 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E GP+ +    +   V G    L   E ++LEYLM + G+ V+K  +   IY   D
Sbjct: 120 KPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQQ-D 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + NV+E  I +LRKKL       P+++ R  GY  
Sbjct: 179 FDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 216


>gi|228476127|ref|ZP_04060835.1| transcriptional regulatory protein ResD [Staphylococcus hominis
           SK119]
 gi|314936381|ref|ZP_07843728.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269950|gb|EEK11430.1| transcriptional regulatory protein ResD [Staphylococcus hominis
           SK119]
 gi|313655000|gb|EFS18745.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 241

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 98/233 (42%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++    + + +E  + +   D + I   L+      +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFTIH--EASDGKEAYELAMENDYACILLDLMLPEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 63  EMSSKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQT 122

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S          +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 123 SKPEQSEPHARDVIEFNHLIIDNDAHRVLADQQQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDWN 223
           +   ++  ++   +   V++H+ +LR+KL   ++     + +   +GY  + N
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSEEAAHMIQTVWGVGYKFEVN 234


>gi|166368005|ref|YP_001660278.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166090378|dbj|BAG05086.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 250

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 101/232 (43%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-------AREDVSAIEAFLI 54
            ++++D  +++D  I    ++G    G +       L  S       +R D+  ++  L 
Sbjct: 21  ILIVEDEEVIRDMIILALEEEGYEALGVSDGRVALELLQSQESNHGESRFDLVVLDLMLP 80

Query: 55  GKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++R H  + P++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  Q--INGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR   ++       +   + ++       V+ E   L  +E R+L+  M+   +  +
Sbjct: 139 ALIRRQGFTSLAAAPVRKFRDVLLYPQECRVTVRDEEINLSPKEFRLLDLFMSYPRRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   I+G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLIEQIWGP-DFLGDTKTVDVHIRWLREKLEIDPSQPEYLITVRGFGYRF 249


>gi|156740962|ref|YP_001431091.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232290|gb|ABU57073.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 236

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G  +          ++    + D+  ++  +   G    
Sbjct: 4   ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVILDLMMPEMG--GY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R     S+ P+I ++        +   + G DD V KP + RE++AR+ A+ RR + 
Sbjct: 62  EFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +      I +   GR   V G    L   E  IL  LMA  G+  ++  +   + 
Sbjct: 122 APLEPDVLRAADIVLDRTGRTVRVGGRYIDLTPSEFAILATLMAAPGQVFSRLDLLDRVS 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G       E  ++ HI  LR K+ +       +++   +GY  
Sbjct: 182 GDA-FEGSERTIDVHIRNLRAKIEDDPRNPRYIETVYGMGYRF 223


>gi|332637971|ref|ZP_08416834.1| response regulator [Weissella cibaria KACC 11862]
          Length = 233

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +           L  S   D+  ++  L     +  
Sbjct: 4   ILVVDDEKPISDIIKFNLTKEGYDVVVAMDGREALDLFESEDPDLVLLDQMLPE--LEGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQ P+I ++   S    +   + G DD V KP  +RE+LAR+ A  RR   
Sbjct: 62  EVLRQIRTKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQTP 121

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +   + G + +  D       G+   L  RE  +L +L  + G+ + +  +
Sbjct: 122 VVGQNVMDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLAKHIGQVMTRDDL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
              ++G +D   +   V+  + ++R+K+        +  ++R +GY +
Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGYYL 228


>gi|312144080|ref|YP_003995526.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904731|gb|ADQ15172.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 229

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +          +G  ++ F++    + + +   +D   +   L+  G   +
Sbjct: 5   ILIIEDDAQIARFVELELEHEGYQVKKFDN--GYDGINALKEDDYDLLLLDLMLPGLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S +P+I ++    L+  +   D+G DD + KP    E+LAR+ A+ RR K 
Sbjct: 63  EVCNKIREFSDLPIIMLTAKSELEDKVAGLDTGADDYLTKPFEIEELLARIRALLRRDKG 122

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S N      I V  D    +  G+   L ++E  +L YL+ N G  V++ ++ + ++
Sbjct: 123 TIESANILNISDIEVNLDAHQVKRAGQKIELTKKEYDLLVYLIKNEGIVVSRDKLLNNVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++   E N+V+ +I  LR K+        + + R +GY +
Sbjct: 183 G-YNYTGETNIVDVYIRYLRSKIDEPFEEKLIHTVRGVGYVM 223


>gi|295097669|emb|CBK86759.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 220

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G     G++G +L+   +    + L  S    +  ++  L  K    L
Sbjct: 3   LLIVEDDLLLQEGLALALGNEGYALDCATTAAEADALIQSGEYSLVILDLGLPDKDGATL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R   + P++ ++   +++  ++  DSG DD + KP    E+ ARV A+ RR + 
Sbjct: 63  -LCQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N    G I +    +    Q +   +  +E  +L  L+   G+ V +  +   IY  
Sbjct: 122 HSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYSW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 182 QDDPG-SNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLE 217


>gi|167464300|ref|ZP_02329389.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 227

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G  +    ++  +E L      +V  +   ++       
Sbjct: 5   ILVVEDEHILREIIKDYLLNEGYQV--LEAINGKEALTLFEENEVHLVILDIMMPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S +P+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  SVCRRIRKTSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYA 122

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +      N   +  I V    R  +V G+   L   E  IL YLM N+G  + + Q+ + 
Sbjct: 123 IEEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           I+G ++ + ++  V SHI  LR KL +K     + +    GY  + N
Sbjct: 183 IWG-YEFSGDDRTVNSHIRNLRTKLGDK--SKCIITVVRAGYKFEGN 226


>gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes]
 gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes]
 gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes]
 gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes]
 gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes]
 gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|164687352|ref|ZP_02211380.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
 gi|164603776|gb|EDQ97241.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
          Length = 226

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 112/227 (49%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            ++IDD   + +       ++G  ++ ++   F+ +L++   + D+  ++  L       
Sbjct: 4   ILIIDDEIHIVELLKFNLENNGYKVD-YSYDGFDGYLKTKEFQPDLILLDWMLPN--ISG 60

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           ++L + IR+     Q+P+I ++     +  L+  + G DD + KP   +E+LAR+ ++ R
Sbjct: 61  IDLLKKIRSDETLEQIPVIMLTAKNMEEDKLEGLEDGADDYITKPFSVKEVLARITSVLR 120

Query: 118 RLKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R K ++N      +   I+V  +       G+   L  +E +IL+ L+ N+G  + +T +
Sbjct: 121 RYKYTSNEKIEVLKADDIQVNVNKHIVTKNGQEIELTLKEFQILKLLIENKGNVLTRTFL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +D   E   ++ HI  LRKK+ +      +++ R +GY I
Sbjct: 181 LDKIWG-YDYYGETRTLDVHIRHLRKKIGDN-DSKLIETVRGVGYKI 225


>gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 235

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D       + G +++  +      W       D   ++  L   G    E
Sbjct: 4   LVVEDEERTADLLRRGLTEAGYAVDLVHDGTDAVWQAGEISYDAIVLDLMLP--GLDGFE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  +  P++ ++    +   +   D+G DD + KP    E+ AR+ A+ RR  V
Sbjct: 62  VCRRLRAARRWSPILMLTARGDVDDRIHGLDAGADDYLAKPFSFGELTARLRALIRRGAV 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G I +    R  +  GE   L  +E  +LE LM   G+ + ++ I   ++ L
Sbjct: 122 ERPATLRVGDIHLDPAARSVQRAGEPVDLSAKEFSLLELLMRRPGEVLTRSYILDHMWDL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  NVV+ ++  LR+K+    G   +++ R  GY +
Sbjct: 182 G-YDGTSNVVDQYVRYLRRKIDPADGLSRIETVRGAGYRL 220


>gi|290957456|ref|YP_003488638.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646982|emb|CBG70081.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 245

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDPTIVDAIAARLRAEGFVVQTATDGPAAVDTAEAWQPDLLILDIMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|121534003|ref|ZP_01665829.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121307514|gb|EAX48430.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 228

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   +       F  +G  +   +       L      D++ ++  L        
Sbjct: 5   IAIVDDDKKIVALLKTYFEKEGFVVYEAHDGAEGLRLIQDKTPDIAVLDVMLPQ--LDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++        L   + G DD V KP   RE++ARV AI RR   
Sbjct: 63  EICRKLRKEGNIPIIMLTARDEETDKLIGLELGADDYVVKPFSPREVVARVKAILRRSGK 122

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +++    G + +       ++      L   E ++L  L +N  +  ++ QI   I
Sbjct: 123 GTEDTSDVITAGRLAIDRTRHVVKIDDIPLELTPTEFKLLALLASNPERVFSRLQIIEHI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +     E  V++H+  LR+KL +      + +   +GY  
Sbjct: 183 QG-YSFEGYERTVDAHVKNLRRKLGDA---QYIQTVYGIGYKF 221


>gi|160880958|ref|YP_001559926.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160429624|gb|ABX43187.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 230

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       + G  +E F + E           ++  ++  L    E  
Sbjct: 8   LIYIVEDDRNIREIEGYALRNSGFEVEVFETGEELYRALEKEIPELILLDVMLPN--EDG 65

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L +   +R  S    +P++ ++   +    +   D G DD + KP    E+++RV A+ R
Sbjct: 66  LSILSNVRKDSKTENIPIMMVTAKTTEMDKVKGLDLGADDYITKPFGIMELVSRVKALLR 125

Query: 118 RLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R   +           + +  +     V GE   L  +E  +L YL+ N+G  +++ +I 
Sbjct: 126 RAGGNGQNVGALSFHDVSLHVEKHSVTVDGESCELTYKEFELLRYLLENQGIVLSRDRIM 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G FD   E   V+ HI  LR KL    G D + + R +GY I
Sbjct: 186 ERVWG-FDYEGESRTVDMHIKTLRHKLGA--GGDIIKTVRNVGYKI 228


>gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 232

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 103/230 (44%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G  +   ++         S   D+  ++  L   G   +
Sbjct: 5   ILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEVDLILLDVMLP--GMSGI 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL R IRAH S   ++ ++   S++  +   D G +D + KP    E+LAR+ A  R   
Sbjct: 63  ELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQG 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +        +++    R+    G    L  RE  +L YL+ N+ + + + QI
Sbjct: 123 KPLPEEEAAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +A++G +D   + NVV+ +I  +RKK+ +    + + + R +GY +  N
Sbjct: 183 LAAVWG-YDYYGDTNVVDVYIRYVRKKIDHGGTQELIHTVRGVGYVLKEN 231


>gi|312200460|ref|YP_004020521.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311231796|gb|ADP84651.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 325

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD +++ +        +G  +    +      +    + D   ++  L       L 
Sbjct: 86  LVVDDESVLTELLTMALRYEGWEVAAAGTGTTALRMIDEFQPDAVVLDIMLPD--MDGLA 143

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+    +P++ ++   +++  +    +G DD V KP    E+ AR+  + RR+  
Sbjct: 144 VLRGMRSVRPDIPVLFLTAKDAVEDRVLGLTAGGDDYVTKPFSIEELAARLRGLMRRVHG 203

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     N    G + +  D R+    G    L   E  +L YLM N  + ++K QI   +
Sbjct: 204 TVAARRNVLSVGDLTLDEDSREVYRDGAEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 263

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE ++S LRKK+ +      + + R  GY +
Sbjct: 264 WN-YDFGGQANVVELYVSYLRKKI-DAGRQPMIHTMRGAGYVL 304


>gi|258516238|ref|YP_003192460.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779943|gb|ACV63837.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 232

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 99/228 (43%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KV 60
            ++ DD   ++         +G  +    ++  E+ L+   ++    +    +   E   
Sbjct: 6   IMVADDEERIRRLVKMYLEKEGYEVG--QAINGEDVLKQLGQDASWDLLLLDLMMPETDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R +R  S +P+I ++        +   + G DD V KP   RE++AR+ A+ RR++
Sbjct: 64  WQVCRELRKKSDIPIIMLTARGDEIDRVLGLELGADDYVLKPFSPRELVARIKALLRRVR 123

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    + +   + +    R   + G+V  L  +E  +L ++  + G+  ++ Q+  
Sbjct: 124 RKQVYGDEVQLQFSGLTIDPASRKVILMGQVLSLTPKEFDLLLFMSQSAGQVFSREQLLR 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
            I+  +D   +   V++HI++LR KL   K     + +   +GY  + 
Sbjct: 184 NIWN-YDYFGDPRTVDTHINRLRDKLTKIKDAPQYIHTVWGVGYKFEV 230


>gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium marinum M]
 gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M]
          Length = 232

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 102/226 (45%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++E  +       + +S R D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPR--LDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             ++ A          + +    R+         L R E  +LE L+AN  + + +++I 
Sbjct: 123 PEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G FD     N +E ++  LR+K   +     + + R +GY +
Sbjct: 183 EEVWG-FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 227


>gi|284053232|ref|ZP_06383442.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291565873|dbj|BAI88145.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 233

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 95/233 (40%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S +   +      +    R DV  ++  L   G   L
Sbjct: 3   ILIVEDEPEIALLIRRTLEGEGFSCQISQNGLSALEIFQQQRPDVIILDLMLP--GLDGL 60

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   IR         ++ ++        +    +G DD + KP   RE++ARV A+ RR
Sbjct: 61  EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120

Query: 119 LKVSNNRAETG---PIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKT 171
                 + +T       V  D R    Q     E   L   E  +L   ++  G+  ++T
Sbjct: 121 SLRQGGQTQTHQTPHFTVDIDQRKANFQNHGNTEPLDLTTLEFNLLATFLSYPGRVWSRT 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           Q+   ++G  D   +E VV++H+++LRKK+  +      + +   +GY  + N
Sbjct: 181 QLIDKLWG-DDFFGDERVVDTHVARLRKKIEPDPSHPTFIKTVTGVGYKFEDN 232


>gi|225575152|ref|ZP_03783762.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037619|gb|EEG47865.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
           10507]
          Length = 222

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  +      G     F + +  + L       +  +   ++       
Sbjct: 4   ILIVEDEKKMQEIIVEYMQRGGHIC--FTADDGIDALVVLKSNPMDLMILDIMMPNLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + +I R  S +P+I ++   S    L  +D G DD + KP   + +LA+  A+ RR   
Sbjct: 62  SVCKIAREMSNLPIIMLTAKGSEDDKLKGYDLGADDYMTKPFSPKVLLAKANALLRRSSL 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  +    G I +        V G+   L  +E  +L + M N  +  ++ Q+ + I+G 
Sbjct: 122 LPADTINAGKISLVPASHKVFVNGKEIVLTHKEYELLYFFMVNPEQIFSREQLLNRIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D       V++HI  LR+KL ++     + +    GY  + 
Sbjct: 181 YDFEGTTRTVDTHIKTLRQKLGDEG--KHIVTLIRSGYKFEV 220


>gi|209547782|ref|YP_002279699.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533538|gb|ACI53473.1| two component transcriptional regulator PhoB, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 227

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G  ++     +  E        D+  ++  L   G   +EL
Sbjct: 7   VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILDWMLP--GVSGIEL 64

Query: 64  PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R +R   +    P+I ++        +    +G DD V KP    E++ARV A+ RR +
Sbjct: 65  CRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRAR 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   + G I +  +      +     L   E R+LE+LM++ G+  +++Q+   ++
Sbjct: 125 PEVLSTVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 185 G-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|27468094|ref|NP_764731.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866959|ref|YP_188632.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
           RP62A]
 gi|251810909|ref|ZP_04825382.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876082|ref|ZP_06284949.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366547|ref|ZP_06613224.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315640|gb|AAO04775.1|AE016748_9 staphylococcal respiratory response protein SrrA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637617|gb|AAW54405.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
           RP62A]
 gi|251805589|gb|EES58246.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295107|gb|EFA87634.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319316|gb|EFE59685.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725454|gb|EGG61937.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU144]
 gi|329735293|gb|EGG71585.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU045]
 gi|329737131|gb|EGG73385.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU028]
          Length = 241

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 89/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +      +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPE--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 63  EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQT 122

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +N            E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 123 ANTEQSEPHARDIIEFSHLVIDNDAHRVLADDQQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEV 233


>gi|296135753|ref|YP_003642995.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295795875|gb|ADG30665.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 242

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A          G++G   +          L  +   D+  ++A L   G    
Sbjct: 20  ILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAMLP--GRDGW 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            +   +RA    P++ ++    +   +   + G DD + KP    E+LARV ++ RR + 
Sbjct: 78  SVLSELRARQTTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGVT 137

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  E   +RV    +  E  G+   L  +E  +L  L    G+ +++T I   ++ +
Sbjct: 138 RMPDVMEVADLRVDMHRQRAERSGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWDM 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+ HI +LR KL        + + R +GY ++ 
Sbjct: 198 -NFDSDTNVVDVHIRRLRSKLDEPFPAPLLHTVRGVGYVLEV 238


>gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A +          +G  +           L  + R D+  ++  L   G   +
Sbjct: 5   ILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIMLP--GFSGI 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR    Q P++ ++   S++  +   D G +D + KP    E+LAR+ A  R   
Sbjct: 63  EILRRIRSKDKQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRIKS 122

Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       E   +++    R+     +   L  RE  +L YLM N+ + + + QI 
Sbjct: 123 AGTEEPAVHDCLEVSDLKLNEKTREVSRGDKAIELTPREFDLLVYLMTNKRQVLNREQIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A++G +D   + NVV+ +I  LRKK+        + + R +GY +
Sbjct: 183 EAVWG-YDFLGDTNVVDVYIRYLRKKIDMPERPALIHTIRGVGYVL 227


>gi|262281095|ref|ZP_06058877.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|299768811|ref|YP_003730837.1| response regulator [Acinetobacter sp. DR1]
 gi|262257326|gb|EEY76062.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|298698899|gb|ADI89464.1| response regulator [Acinetobacter sp. DR1]
          Length = 228

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   +           G  +  F+  +         + ++  ++  +       L +
Sbjct: 6   LVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMVLDLMVPR--MDGLTI 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+   
Sbjct: 64  CRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLERKA 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I      
Sbjct: 124 EPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDSF 182

Query: 184 AVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
            V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 183 DVADRVIDSHIKNLRRKISEAAETGNRHEWIQAVYGVGYRFEY 225


>gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 237

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L +  + ++  ++  +       +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMP--KIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|302388283|ref|YP_003824105.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198911|gb|ADL06482.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 229

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  N  + E+ L  +  ED   +   L+  G    
Sbjct: 4   ILIVEDEESIAELEKDYLELSGFEVEIEN--DGEQGLHMALHEDFDLVILDLMLPGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICRKVREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++    R   V GE      +E  ++ +L  N      K ++F
Sbjct: 122 LIGSGVPDNEIIEIRGLKIDKTARRVWVNGEEKNFTTKEFDLVTFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 NKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|196042864|ref|ZP_03110103.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|225865207|ref|YP_002750585.1| regulatory protein VanR [Bacillus cereus 03BB102]
 gi|229185478|ref|ZP_04312659.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
 gi|196026348|gb|EDX65016.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|225787874|gb|ACO28091.1| regulatory protein VanR [Bacillus cereus 03BB102]
 gi|228597988|gb|EEK55627.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
          Length = 231

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       ++  ++  + + +           D++ ++  L       L 
Sbjct: 6   LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDV--SGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K  
Sbjct: 64  ICQKIREKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123

Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N       N      + +     +  +  +   L   E  IL  L  N+G  V+  Q+F 
Sbjct: 124 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            I+G    +   N +  HI  LR+K+ + +     + +   +GY I+
Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIE 230


>gi|160938310|ref|ZP_02085665.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438683|gb|EDP16440.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
           BAA-613]
          Length = 235

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       DG+ ++     E    L      D+  ++  L        E
Sbjct: 5   LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIELAKKTEYDIVLLDVMLP--KYDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I ++        +   + G DD ++KP +  E+ AR+ AI RR   S
Sbjct: 63  VCQAIREFSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSGKS 122

Query: 123 ---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +     G +++ ++ R   +      L  +E  +LE L+ N  K  ++  +
Sbjct: 123 KRQKREEAESGVIGAGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREAL 182

Query: 174 FSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G    ++ +   V+ H+ +LR+K+  +      V +K  +GY  
Sbjct: 183 LTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPRYVHTKWGVGYYF 231


>gi|152984274|ref|YP_001349554.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7]
 gi|150959432|gb|ABR81457.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7]
          Length = 225

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++     E   +  S    D++ ++  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVVDLGLP--GMSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R+  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRELRSQGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  E GP+ +  + +   V+ +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFVQSTIEAGPLLLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R  GY
Sbjct: 180 PDDEERDANVIEVLVGRLRRKLEACGGFKPIDTVRGQGY 218


>gi|219667424|ref|YP_002457859.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537684|gb|ACL19423.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  235 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   A    +G  +    +      L      D+  ++  L   G    
Sbjct: 3   ILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLIALTLFKENSYDLVLLDLMLP--GLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S  P+I ++    L+  L   + G DD + KP   RE++AR+ A+ RR  +
Sbjct: 61  EICREIRKISATPVIMLTAKVELEDRLQGLNLGADDYIVKPFSPREVVARIKAVLRRTHI 120

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +++      + + +   +   Q E   L   E +IL  L    G+  ++ Q+   
Sbjct: 121 ETALLADSITYDNGLTIDNARHEVRFQDEAILLTPTEFKILGALAKYPGRVYSRGQLVQI 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + G  D   +E V+++HI KLR+KL    G    + +   +GY  +
Sbjct: 181 VQG-HDFGGDERVIDAHIKKLRQKLEGVPGDPKIILTVYGVGYKFN 225


>gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 225

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  +   G      ++G  ++     E           D+  ++  L        
Sbjct: 4   LLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEKGLDKVRLGNYDLVILDIMLP--KLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S +P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 62  SVCREIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + +    R    +G+   L  +E  IL  L +N GK   K ++   I
Sbjct: 122 PYIKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G FD   + N V  H+ KLR+K+ +       + +K   GY +
Sbjct: 182 WG-FDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYM 224


>gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 244

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +    +++  + L  +A      I   +       L
Sbjct: 11  ILVVDDEPAVREALRRSLAFEGYEVR--TAVDGLDALDQAAAYAPDLIVLDIQMPRMDGL 68

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA   V P++ ++   ++   +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 69  TAARRLRASGSVTPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 128

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     + +    G +R+    R+    G    L R E  +LE  +A+  + + + 
Sbjct: 129 YAAPAAGPEPAGDALAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFLAHPRQVLTRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI   ++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 189 QILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYVL 236


>gi|326202264|ref|ZP_08192133.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987382|gb|EGD48209.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 232

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G  ++E ++  E    L  S   D+  ++  L       
Sbjct: 5   ILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVN-LALSQNPDLILLDIMLP--KMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R +R     P++ ++        +   + G DD + KP   RE++ARV A  RRL 
Sbjct: 62  FTVCRKLRQSISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRLI 121

Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 E         G + +  D  + +   E   L  RE  ++++L A +G   ++  
Sbjct: 122 PGEQPGEDTNSHINKYGDLTIDIDRYEIKRGEETIELTLREFELVKFLAAQQGTIFSRET 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   ++G ++   +   V+  + ++R+KL  +      + +KR +GY  +
Sbjct: 182 LLEKVWG-YEYYGDVRTVDVTVRRVREKLELDPANPQYIVTKRGVGYYFN 230


>gi|288940032|ref|YP_003442272.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288895404|gb|ADC61240.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 224

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D       + G  ++   + +  E L  +A  D   +    +  G   L
Sbjct: 3   ILLVEDDPQMADYLRKALIEAGAVVD--RAADGREGLLMAAGSDYDVLILDRMLPGLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + R +RA     P++ +S    +   ++   +G DD + KP    E+ ARV A+ RR  
Sbjct: 61  AIVRTLRASGNRTPVLFLSALGDVDDRVEGLRAGGDDYLIKPFAFSELQARVEALLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R   G + +    R+    G+   L  RE R+LE LM + G+ V +T +   ++
Sbjct: 121 AEAPETRLRVGDLEMDLLKREVTRAGQSIQLQPREFRLLECLMRHAGRVVTRTMLLEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRGKIDKDFDPPLLQTVRGAGYRL 221


>gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes]
 gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes]
 gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes]
 gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes]
 gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes]
 gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes]
 gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes]
 gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes]
 gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes]
 gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes]
 gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes]
 gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes]
 gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes]
 gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes]
 gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes]
 gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes]
 gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes]
 gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes]
 gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes]
 gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 222

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +     F ++G +++     E   +   +   D   ++  L       L
Sbjct: 3   ILIVEDEKTLANLIKKGFEEEGFAVDIAYDGEDGLFFAQNYSYDCIVLDIMLPV--IDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + +R  +   P+I ++   +++  +   DSG DD + KP    E+L+R  A+ RR  
Sbjct: 61  TILKKLRKQNNTTPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++S+   +   + + +  +  +   +   L  +E  +LEYL AN+ K +++T I   IY 
Sbjct: 121 EISSPIIKVDNLEIDTAKKTVKRANQPIELSAKEYALLEYLAANKNKVLSRTMIIEHIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   + NV++  I+++R K+        V + R +GY++
Sbjct: 181 E-EFDFDSNVIDVFINRIRNKIDKNFDKKLVHTIRGMGYAL 220


>gi|20806986|ref|NP_622157.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20515468|gb|AAM23761.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 225

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD  +   G      ++G  ++     E           D+  ++  L        
Sbjct: 4   LLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLEKVRIGNYDLVILDIMLP--KMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S +P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 62  SVCREIRTFSNIPIIMLTARGDDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRASN 121

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +    R    +G+   L  +E  IL  L +N GK   K ++   I
Sbjct: 122 PYVKKKEEIRRGDLYINIPERAVYKRGKKIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G+ D   + N V  H+ KLR+KL +       + +K   GY +
Sbjct: 182 WGV-DFYGDANTVTVHVRKLREKLEDDPANPQYIFTKWGAGYYM 224


>gi|163940874|ref|YP_001645758.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863071|gb|ABY44130.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 224

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  + E      S A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIP--GIDGLQ 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 230

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   V++        +G  +  F + +  + L+   +E    +   ++      L
Sbjct: 3   IVVVDDEQAVRESLRRSLSFNGYDV--FLAEDGVQALEVIEKEQPELVILDVMMPRMDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +R A    P++ ++    +   +   D+G DD + KP    E+LARV ++ RR  
Sbjct: 61  EVCRTLRSAGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S        +++  D RD    G    L R E  +L+ LMAN  + ++++ I 
Sbjct: 121 ADAVGGPSQGELTFDDLKLNPDTRDVTRGGRHISLTRTEFALLQLLMANARRVLSRSTIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D     N +E +I  LR+K  ++     + + R +GY +
Sbjct: 181 EEVWG-YDFPTSGNALEVYIGYLRRKTESEGEPRLIHTVRGVGYVL 225


>gi|294339915|emb|CAZ88278.1| Transcriptional activator protein czcR [Thiomonas sp. 3As]
          Length = 242

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A          G++G   +          L  +   D+  ++A L   G    
Sbjct: 20  ILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAMLP--GRDGW 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            +   +RA    P++ ++    +   +   + G DD + KP    E+LARV ++ RR + 
Sbjct: 78  SVLSELRARQTTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGVT 137

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E   +RV    +  E  G+   L  +E  +L  L    G+ +++T I   ++ +
Sbjct: 138 RLPEVMEVADLRVDMHRQRAERGGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWDM 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+ HI +LR KL        + + R +GY ++ 
Sbjct: 198 -NFDSDTNVVDVHIRRLRSKLDEPFPAPLLHTVRGVGYVLEV 238


>gi|153010575|ref|YP_001371789.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562463|gb|ABS15960.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 220

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A+++DG        G + +   + E      ++   D   ++  L       L+
Sbjct: 4   LIVEDDAVLRDGLTVGLSIGGFTADAVKTCEEAGAALTNHEFDALVLDLMLPD--GSGLD 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +R      P++ ++    +   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  VLKSLRERQDATPVLLLTARDQVADRIHGLDAGADDYLGKPFDLDEVAARLRALVRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E   +R+    ++ E QGE   L RRE  IL  LM + G+ ++++QI   +YG 
Sbjct: 122 RPQALIEWRGLRLDPANQNVEHQGEPIRLSRREYSILHALMIHPGRILSRSQIEEKLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E VE N VE HI  LR KL    G   + + R +GY +
Sbjct: 181 WQEEVESNAVEVHIHHLRGKL----GPGMIQTVRGIGYRL 216


>gi|70726425|ref|YP_253339.1| respiratory response protein [Staphylococcus haemolyticus JCSC1435]
 gi|68447149|dbj|BAE04733.1| staphylococcal respiratory response protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 241

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 93/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++   ++ +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLKRESFTIHEASNGKEAYNLAIENDYACILLDLMLPE--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 63  EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S          +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 123 SKPEQSEPHARDVIEFNHLIIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFEV 233


>gi|23099274|ref|NP_692740.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22777503|dbj|BAC13775.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 238

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 89/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++     +       +   DV  ++  +  K    +
Sbjct: 7   ILVVDDEDRIRRLIKMYLEKEDFEIDEAADGDVALEKALANDYDVIILDIMMPEK--DGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R     P+I ++        +  F+ G DD + KP   RE + RV A+ RR+  
Sbjct: 65  EVCKELRKEKDTPVIMLTAKGEESNRVQGFEVGADDYIVKPFSPREAVLRVKALLRRVST 124

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S N      + +  D        +   L  +E  +L +L     K   + Q
Sbjct: 125 KTYQEVDTSSKNMLVFPHLTIDHDAHRVAADNQEVSLTPKEYELLCFLANAPDKVFNREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +K     + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNTVSKEAAKMIVTVWGVGYKFEV 235


>gi|223043244|ref|ZP_03613291.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
 gi|222443455|gb|EEE49553.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
          Length = 219

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++             +   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPN--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR + 
Sbjct: 62  EICRQIRQEQSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  +   I +  D     V G    L + E  +L  L  NR   + + QI   ++G F
Sbjct: 121 QKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-F 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218


>gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     +    D  S++     E    L    + D+  ++  L       +
Sbjct: 5   ILLVEDDNDINQLIESQLKQDHYSVDSARDGEEALALFQKEKFDLILLDLMLPKV--NGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S+VP++ IS   S          G DD ++KP    E+ ARV A  RR  V
Sbjct: 63  ELLKHIRETSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATV 122

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             + +       +V+G+  PL  +E  IL+ L+ +  +   K Q
Sbjct: 123 YAETESKPADPPVITFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTHHSRVFTKEQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           I+  I+   D    ENV+  HI +LR+K+  +      + +   +GY +
Sbjct: 183 IYQLIW-EEDYYGNENVINVHIRRLREKIEEDPSAPQYIRTIWGIGYKM 230


>gi|206969728|ref|ZP_03230682.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206735416|gb|EDZ52584.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 230

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +         + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|317125629|ref|YP_004099741.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589717|gb|ADU49014.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +  ++G+ +               AR D+  ++  L   G   +E
Sbjct: 6   LVVDDDLALAEMLGIVLRNEGLEVSHVADGTDAVAAFREARPDLVLLDVMLP--GLDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IRA S VP++ ++        +   +SG DD V KP   +E++ARV A  RR  + 
Sbjct: 64  VCRRIRAESGVPIVMLTARTDTVDVVVGLESGADDYVVKPFKPQELIARVRARLRRGDEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEKLSIGDLDIDVAGHSVKRDGQPLSLTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 183 RHAGDTRLVNVHVQRLRSKIEHDPEHPEIVVTVRGVGYK 221


>gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8]
 gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8]
          Length = 220

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++        +++ +    DV  ++  L       L
Sbjct: 3   ILVVEDEPTLATQLADALRQAGYTVDTAADGGTAQYMGAVETYDVVVLDLGLPV--MDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +  RA  Q +P++ ++   +    +   D+G DD + KP H  E+LARV A+ RR  
Sbjct: 61  TVLKQWRAGGQGMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ +   GP+ + +      V G+   L   E ++L  LM   G+ ++++++   +Y 
Sbjct: 121 SHASAQWRCGPLMLDTRLAKVTVDGQALSLTSHEFKVLAVLMQRAGEVISRSELTEHVYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N ++  I +LRKKL      D +++ R LGY +
Sbjct: 181 Q-DHDRDSNTIDVFIGRLRKKL----PPDTIETVRGLGYRL 216


>gi|82751281|ref|YP_417022.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|258424109|ref|ZP_05686991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282916953|ref|ZP_06324711.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770757|ref|ZP_06343649.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|82656812|emb|CAI81241.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|257845730|gb|EEV69762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282319440|gb|EFB49792.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460904|gb|EFC07994.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|298694963|gb|ADI98185.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302333358|gb|ADL23551.1| response regulator OmpR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|323440763|gb|EGA98472.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O11]
 gi|323442918|gb|EGB00541.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O46]
          Length = 234

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +      +       + + D+  ++  L  K    ++
Sbjct: 6   LVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKK--DGID 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R +   VP++ ++        +   + G DD + KP   RE++ARV AI RR + 
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E       G IR+  D  +     E+  L  +E  +L YL+  +G+ + +  + +
Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++  ++ A +  +V+ HIS LR KL +       + + R LGY ++
Sbjct: 184 TVWN-YEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229


>gi|163943242|ref|YP_001642472.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865439|gb|ABY46497.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 236

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +++        +   +    N  E  +   +  + D+  ++  +  K    
Sbjct: 4   ILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTH-QPDLIILDLMMPKK--DG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            EL   IR  S VP+I ++     +  +     G DD + KP   RE++ RV  I RR  
Sbjct: 61  WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +  +   E   ++++   R   V      L  +E  +L  +  +  +  +++Q
Sbjct: 121 QVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQ 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
           +   I+  F      N V   +S+LR+KL      +  + +   +GY  + N
Sbjct: 181 LLELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPN 231


>gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 220

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      +S   D+  ++  L  +    L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAATSQPYDLVLLDLGLPKR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + +        ++G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216


>gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 232

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIVDDEAEIADLIEIHLEKEGYHV--VKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|217966935|ref|YP_002352441.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217336034|gb|ACK41827.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 224

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 3/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  ++     E  +++  +  E    +   ++      +
Sbjct: 3   ILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKIDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA + Q P++ ++    ++  +   +SG DD + KP  + E+LAR+ A+ RR K
Sbjct: 63  SLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRRPK 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     +   I + +  +          L  +E  ILEYLM N  + ++K QI S ++G
Sbjct: 123 NLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++     NVVE+HI  LRKKL  K   + +++ R +GY I
Sbjct: 183 -YESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRI 222


>gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 236

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +           + D++ ++  L        
Sbjct: 10  LLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPD--MDGF 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A    P++ ++     +  +     G DD V KP    E++AR+ A+ RR  
Sbjct: 68  TVTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++          + +  D  +    GEV  L   E ++L YLM N  + ++K QI   
Sbjct: 128 SLDDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDH 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + ++VES+IS LR+K+        + +KR +GY +
Sbjct: 188 VW-EYDFNGDASIVESYISYLRRKIDVGGHEKMIHTKRGVGYML 230


>gi|306834322|ref|ZP_07467439.1| phosphate regulon response regulator [Streptococcus bovis ATCC
           700338]
 gi|304423495|gb|EFM26644.1| phosphate regulon response regulator [Streptococcus bovis ATCC
           700338]
          Length = 225

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  +      G   +GF             +  +  ++  L    +  
Sbjct: 1   MIYCVEDDDDIRELMLYTLRTAGFEAQGFPDSVLFWKAMEEEQPKLILLDIMLPV--DDG 58

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L + + +R++     +P+I  +   +    +   D G DD + KP    E+++R+ A+ R
Sbjct: 59  LTILKSLRSNGMTKDIPVIMTTAKGTEFDKVKGLDLGADDYLVKPFGMMEMISRIKAVLR 118

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   +          + + +        G+   L  +E  +L  LM N G+   + ++  
Sbjct: 119 RTSNQEQETHLTIKNLSLDAKNYTVRNNGQKIELTLKEFDLLSLLMLNPGRVFTRQELLD 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G      E   V+ HI  LR KL +      + + R +GY ++ 
Sbjct: 179 KVWGEH-FIGETRTVDVHIGTLRMKLGDASH--LIKTVRGVGYRLEV 222


>gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 268

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 103/228 (45%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       D+   +   +S +  E L+   +    A+   L+  G   L
Sbjct: 27  ILIVEDDVDIADVLSLHLRDERYEV--VHSADGNEGLRLLEQGGWDALILDLMLPGVDGL 84

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR+ 
Sbjct: 85  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 144

Query: 121 --VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               ++R E G +R     +    R+    G+   L  RE  +L Y   + GK  ++  +
Sbjct: 145 ALAKDSRIEAGSLRLAGLSIDPLTREAAADGKPIELTPREFDLLYYFAQHPGKVFSRMDL 204

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +    + + +    GY +
Sbjct: 205 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 251


>gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 342

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A   ++G+  +          L      D+  ++  +       +
Sbjct: 119 ILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPN--MDGI 176

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 177 EACMKIREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+         E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 297 EAVWEEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 342


>gi|114332048|ref|YP_748270.1| two component transcriptional regulator, winged helix family
           protein [Nitrosomonas eutropha C91]
 gi|114309062|gb|ABI60305.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas eutropha C91]
          Length = 240

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++       +    +   NS E      +    D+  ++  L+  G+  +E
Sbjct: 6   LVVEDEPAIQELIAYNLRNANYIVVCVNSAEQAVVKINEILPDLILLDWMLL--GKSGIE 63

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             R +R   +    P+I ++        +   ++G DD + KP   RE++AR+ A+ RR 
Sbjct: 64  FARSLRRDPRTRSIPVIMLTARVEEGDKVSGLEAGADDYITKPFSPRELIARIKAVLRRS 123

Query: 120 --KVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAK 170
             + S+       +R+        V       + +   +   E R+L +LMA+  +   +
Sbjct: 124 LPEASDEILNAEGVRLNPMTHRVTVINQEDGFREKELLVSPTEFRLLHFLMAHAERVHTR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   ++G     VE+  V+ HI +LRK L      D + + R  GY  
Sbjct: 184 AQLLDRVWGDH-VFVEDRTVDVHIRRLRKVLEVAGKADLIQTVRGAGYRF 232


>gi|229133940|ref|ZP_04262762.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228649500|gb|EEL05513.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 237

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 91/231 (39%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +   +    + +    L  + + D+  ++  +  K     
Sbjct: 5   ILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKK--DGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD + KP   RE++ RV  I RR   
Sbjct: 63  ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSQ 122

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E   ++++   R   V  +   L  +E  +L  +  +  +  +++Q+
Sbjct: 123 VPIQAKESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
              I+  F      N V   +S+LR+KL      +  + +   +GY  + N
Sbjct: 183 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPN 232


>gi|313835591|gb|EFS73305.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928691|gb|EFS92522.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970292|gb|EFT14390.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328908152|gb|EGG27911.1| response regulator [Propionibacterium sp. P08]
          Length = 226

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++    +   +G  ++   S    + L++ +R     +   L+  G    E
Sbjct: 5   LIIEDEESYREATAFMLRKEGFEVDTATS--GSDGLETYSRNGADIVLLDLMMPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R    V +I ++   S    +   + G DD V KP  HRE++AR+ A+ RR    
Sbjct: 63  VCRQLRQRGNVRIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGPE 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++VS +  E   +R+  +  +  V+G    L  +E  +LE L+ N G+ + +  +   ++
Sbjct: 123 IEVSPDVLEESGVRMDVERHEVSVEGTTVRLALKEFDLLEVLLRNAGRVMTRASLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G  D   +   ++ HI +LR K+         + + R LGY  
Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEKDSSRPVRITTVRGLGYKF 224


>gi|294012877|ref|YP_003546337.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
 gi|292676207|dbj|BAI97725.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
          Length = 233

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 107/225 (47%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + +  I  F  +   +   ++++ EE L  +       +    + +    +E
Sbjct: 7   LLVEDDAALAELLIWHFKREDFEV--VHTVDGEEALLLAQENMPDIVLLDWMVESLSGIE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R     + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ RR+
Sbjct: 65  VCRRLRRMNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +        + + + G      G+V PL   E R+L++ + + G   ++ ++  ++
Sbjct: 125 RPALAGETLTFADVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +G  D  +E   V+ HI +LRK +       D + + R  GY++D
Sbjct: 185 WGQ-DSDIELRTVDVHIRRLRKAINADGRHRDIIRTVRSAGYALD 228


>gi|167630854|ref|YP_001681353.1| two-component response regulator resd [Heliobacterium modesticaldum
           Ice1]
 gi|167593594|gb|ABZ85342.1| two-component response regulator resd [Heliobacterium modesticaldum
           Ice1]
          Length = 240

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 102/238 (42%), Gaps = 23/238 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE---WLQSSAREDVSAIEAFLIGKGEK 59
           +L++D   ++              E F  +E EE    L+   +  V  +   ++  G  
Sbjct: 8   LLVEDEEKIRRMLRLFLEQ-----EAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
                R IR  S+VP++ ++        +  F+ G DD V KP   RE++ RV A+ RR 
Sbjct: 63  GWTTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRR 122

Query: 120 KVSNNR------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             +  +                 + ++ +GR   V+GE   L   E  +L YL  N G+ 
Sbjct: 123 SSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDWN 223
           +++  +   ++G ++ A +   V++H+ +LR+KL   +      V + R  GY  + N
Sbjct: 183 LSRDLLLDRVWG-YEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEVN 239


>gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     +    D  S+      E    L    + D+  ++  L       +
Sbjct: 5   ILLVEDDNDINQLIESQLKQDHYSVASARDGEEALALFQKEKFDLILLDLMLPKV--NGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL + IR  S+VP++ IS   S          G DD ++KP    E+ ARV A  RR   
Sbjct: 63  ELLKHIRETSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             + +       +V+G+  PL  +E  IL+ L+ N  +   K Q
Sbjct: 123 YAETESKPAEPPVIAFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTNHSRVFTKEQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           I+  I+   D    ENV+  HI +LR+K+  +  G   + +   +GY +
Sbjct: 183 IYQLIW-EEDYYGNENVINVHIRRLREKIEEDPSGPQYIRTIWGIGYKM 230


>gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 248

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D   +    +G  +    S             DV  ++  L       LE
Sbjct: 20  LVVDDEQMLADLLASALRYEGWEVTTAGSGIAAVRSAQEIDPDVIVLDIMLPDF--DGLE 77

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R HS  VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 78  VMRRVRGHSPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  +     E G +R+  D  +     +   L   E  +L YLM N  + ++K QI   +
Sbjct: 138 SEEKPDSLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE +IS LR+K+ +K     + + R +GY +
Sbjct: 198 WN-YDFGGQANIVELYISYLRRKI-DKGREPMIHTMRGVGYVL 238


>gi|254712082|ref|ZP_05173893.1| DNA-binding response regulator [Brucella ceti M644/93/1]
 gi|254715152|ref|ZP_05176963.1| DNA-binding response regulator [Brucella ceti M13/05/1]
 gi|261216863|ref|ZP_05931144.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261319730|ref|ZP_05958927.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|260921952|gb|EEX88520.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292420|gb|EEX95916.1| two component transcriptional regulator [Brucella ceti M644/93/1]
          Length = 225

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++          +G  ++  + L+       SAR D+  ++  L     + L
Sbjct: 3   IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPD--GQGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q    +Y 
Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQFEEHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E H+S+LRKKL    G   +++ R +GY +
Sbjct: 180 SFDTEVESNTMEVHVSRLRKKL----GHAIIETVRGIGYRL 216


>gi|21241807|ref|NP_641389.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78046628|ref|YP_362803.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926361|ref|ZP_08187691.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|325927126|ref|ZP_08188393.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|21107184|gb|AAM35925.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78035058|emb|CAJ22703.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325542509|gb|EGD13984.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|325543254|gb|EGD14687.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
          Length = 229

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R  R      ++P+I ++        +   ++GVDD V KP   RE+LAR+ A+ RR
Sbjct: 63  DLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +     G +R+              P+   E R+L + M +  +   +TQ+   
Sbjct: 123 TREDDEDGSVAVGKLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGS-VYVEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225


>gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPE--MDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|330958496|gb|EGH58756.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 226

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +           G S     N L+    +++SA   +  ++  L   G   
Sbjct: 9   ILIVEDEPKLATLMRDYLIAAGYSTHCLANGLDVVPAVRTSA-PQLILLDIMLP--GRDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R+ S VP+I I+        L   D G DD + KP   RE++ARV AI RR  
Sbjct: 66  MDICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTS 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ +A    ++V          G    L   E R+L     + G+  ++  +   +Y  
Sbjct: 126 AADPQA-AKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSD 184

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
               V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 185 H-RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 225


>gi|323699409|ref|ZP_08111321.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. ND132]
 gi|323459341|gb|EGB15206.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans ND132]
          Length = 228

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 93/226 (41%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++         G  +      +    L  + + D+  ++  +   G   L
Sbjct: 6   ILVVEDHRDTRELLKYNLTAAGFDVAAAEDGQLGLNLAHAFKPDIILLDLMMP--GTDGL 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++   A +++P+I ++        +   + G DD V KP   RE++ R+ AI RR
Sbjct: 64  EVCRQLKGDPATARIPVIMLTAKGEEVDKIVGLELGADDYVVKPFSPRELVLRIKAILRR 123

Query: 119 LKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  A    E   +R+  +     + GE   L   E ++L  L++  GK   +  + 
Sbjct: 124 YGAPEPNAPKLWEREGLRIDFEAHQITIDGEETALTATEFKLLTVLVSGAGKVQTRDNLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++           V++H+ +LR+KL        +++ R +GY  
Sbjct: 184 DTVWDTH-FEGYSRTVDTHVRRLRQKLGPY--APWIETIRGVGYRF 226


>gi|283798612|ref|ZP_06347765.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|291073596|gb|EFE10960.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|295090640|emb|CBK76747.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 229

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E  ++ E    L+ +  ED   +   L+  G    
Sbjct: 4   ILIVEDEEAIAELEKDYLELSGFEVEIEDNGET--GLKRALEEDFDLLILDLMLPGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICRKVREAKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGSGMPENEIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 SRIWDM-ESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|188591029|ref|YP_001795629.1| DNA-binding response regulator creb [Cupriavidus taiwanensis LMG
           19424]
 gi|170937923|emb|CAP62907.1| response regulator, CheY family [Cupriavidus taiwanensis LMG 19424]
          Length = 231

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +     DG+  E             +A+ D+  ++  L        
Sbjct: 9   ILVVEDEQAIADTILYALRTDGMLAEHCTLGGDALACLRAAQADLLILDVGLPD--LSGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S  P+I ++        +   + G DD V KP   RE+ ARV AI RR + 
Sbjct: 67  EVCRTLRTFSDAPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               A   E        DG      G    L R E  +L +L+A+ G+  ++ Q+  A++
Sbjct: 127 GGATAKPGEAAGFTHDKDGARLAYHGHWLALTRYEYLLLAWLVAHPGRIYSRAQLMDAVW 186

Query: 179 -GLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSI 220
            G  D    +  V++HI  LR KLR     G + + + R +GYS+
Sbjct: 187 AGALD--TSDRTVDTHIKTLRAKLREVSAEGAERIRTHRGMGYSL 229


>gi|319892417|ref|YP_004149292.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162113|gb|ADV05656.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464480|gb|ADX76633.1| two-component response regulator ArlR [Staphylococcus
           pseudintermedius ED99]
          Length = 225

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +       F  +   +E     +    L  + + D   I   L+      LE
Sbjct: 5   LIIEDEQNLARFIELEFKHENYEVEV--KYDGVSGLNRALQHDFDLILLDLMLPEMDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R     P+I I+    +   +   D G DD + KP    E+LAR  A+ RR    
Sbjct: 63  VCKRLRTQKDTPIIMITAKGEIYDKVTGLDIGADDYIVKPFEIEELLARSRALIRRYSDE 122

Query: 123 N----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N    N  E   I++         Q E   L + E  +L  L  N+ + + + QI   ++
Sbjct: 123 NVSDTNVVEIDGIKIDKSAFHVTYQSEKLELTKTEFDLLLLLAENKNRVLHREQILDHVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 183 G-YESEVETNVVDVYIRYLRNKLKRIDKQKLIETVRGVGYVI 223


>gi|186685384|ref|YP_001868580.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467836|gb|ACC83637.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 227

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D A + +   A   + G  ++  ++ +           DV  ++  +   G+  L 
Sbjct: 4   LFVEDEAKIANFVRAGLKEQGFVVDYCDNGDEGYLRALENEYDVLILDIMVP--GKDGLS 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           + +++R      P+I ++    L   L   + G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  ILKLLRGQGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELAARIHAVVRRSVS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N    GPIR+    R+     +   L  RE  +LEYLM + G+   +TQI   ++G 
Sbjct: 122 NRQNILSVGPIRLDRITREVTCDRQAIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     NVV+  I ++RKK+        ++S R +GY  
Sbjct: 181 YDFNPNTNVVDVCIQRIRKKIDPIDEPVWIESIRGVGYRF 220


>gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 226

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   ++ E  + L+ +      AI   L+  G   L
Sbjct: 3   ILVVDDEPDIVELVRFHLEREGYDV--VSTGEGRDALEKARNLLPDAIILDLMLPGMSGL 60

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R++R     S +P++ ++        +   + G DD + KP   R +LAR+ A+ +R
Sbjct: 61  EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120

Query: 119 LKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +     S+     G + +        V+G    L   E  IL +L  N G   ++ QI 
Sbjct: 121 TRPPEGRSDEPIVVGELVIDPHRYSVRVRGREIILSATEFAILSFLARNPGWVFSRQQII 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A+ G  D  V E  V+  I  +RKKL +    D + + R +GY +
Sbjct: 181 DAVKGE-DYPVTERAVDVQILSIRKKLGDA--RDYIQTVRGVGYRL 223


>gi|256059536|ref|ZP_05449736.1| DNA-binding response regulator [Brucella neotomae 5K33]
 gi|261323505|ref|ZP_05962702.1| transcriptional regulatory protein [Brucella neotomae 5K33]
 gi|261299485|gb|EEY02982.1| transcriptional regulatory protein [Brucella neotomae 5K33]
          Length = 225

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++          +G  ++  + L+       S R D+  ++  L     + L
Sbjct: 3   IILIEDDPILGAAVRDHIATEGHCVDWVSRLDTAHDYMESVRYDLVLLDLMLPD--GQGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R      P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   E G +++    +     G    L  RE  +LE  + + G+ ++K Q+   +Y 
Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E H+S+LRKKL    G   +++ R +GY +
Sbjct: 180 SFDTEVESNTMEVHVSRLRKKL----GHAIIETVRGIGYRL 216


>gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 237

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L +    ++  ++  +       +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMP--KIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|229012406|ref|ZP_04169582.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229060799|ref|ZP_04198154.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229134050|ref|ZP_04262870.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229170828|ref|ZP_04298442.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612666|gb|EEK69875.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228649385|gb|EEL05400.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228718446|gb|EEL70078.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228748857|gb|EEL98706.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 226

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  + E      S A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIP--GIDGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|257066862|ref|YP_003153118.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798742|gb|ACV29397.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 219

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D   +++       + G  + G+            +  ++  ++  L  K    
Sbjct: 1   MIYVVEDDKSIRNLVEYALREKGYEVAGYEDGSQIVSDVKDSPGELLILDIMLPEK--DG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + + + IR  S +P+I ++        +   D G DD + KP    E+++RV A+ RR K
Sbjct: 59  ITILKEIREFSDIPIIMLTARTDEFDKVMGLDLGADDYITKPFSILELISRVKAVLRRSK 118

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      +R+    R  +V G    L  +E  +L   M+N G  + +      ++G
Sbjct: 119 KKDTDHISYKEVRLNMKKRSVKVDGVKIDLTYKEFEMLLLFMSNIGNVITRDDFLLKVWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL+N      +++ R LGY  
Sbjct: 179 -YDYEGETRTVDVHIASLRAKLKNAG--KYIETVRNLGYKF 216


>gi|89896744|ref|YP_520231.1| hypothetical protein DSY3998 [Desulfitobacterium hafniense Y51]
 gi|89336192|dbj|BAE85787.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   A    +G  +    +      L      D+  ++  L   G    
Sbjct: 3   ILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLVALTLFKENSYDLVLLDLMLP--GLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S  P+I ++    L+  L   + G DD + KP   RE++AR+ A+ RR  +
Sbjct: 61  EICREIRKISATPVIMLTAKVELEDRLQGLNLGADDYIGKPFSPREVVARIKAVLRRTHI 120

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +++      + + +   +  +Q EV  L   E +IL  L    G+  ++ Q+   
Sbjct: 121 ETSLLADSITYDNGLTIDNAQHEVRLQEEVISLTPTEFKILGALAKYPGRVYSRGQLVQI 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + G  D   +E V+++HI KLR+KL         + +   +GY  +
Sbjct: 181 VQG-HDFGGDERVIDAHIKKLRQKLERVPSDPKIILTVYGVGYKFN 225


>gi|229084948|ref|ZP_04217200.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228698264|gb|EEL50997.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 224

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 102/222 (45%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + L   A   +  +   ++       
Sbjct: 4   ILIVDDDPHIRELVAVFLEREGF--QTYEAIDGIDALGKIAEVKIDMVILDIMMPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R +  +PL+ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 62  ELCYELRRYYDIPLLMLTAKGETSQKVKGFQLGTDDYLVKPFDPLELVVRVKALLKRYQI 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  V  +V  LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 122 TVSQSIQVGNVLLNRKTFEVTVGEQVIILPLKEFELLFMLGSKIGRTCSREQLIEEVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR+K + +     + + R LGY ++ 
Sbjct: 181 YDFEGNERTLDVHINRLREKFQKETASFAIKTIRGLGYRLEV 222


>gi|258517267|ref|YP_003193489.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780972|gb|ACV64866.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 226

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 104/223 (46%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D+   V+D    L  ++G +++   S +  E L   +  + S I   ++  G    
Sbjct: 6   ILIVDNDRNVRDVIKLLLVNEGFTVD--ESGDGNEALDIFSIHNYSLISLDVMLPGLDGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S +P+I ++        L  F+ GVDD + KP   +E++AR+ A+ +R  +
Sbjct: 64  TVCKKIRERSNIPIIILTARDEEYAKLLGFELGVDDYITKPFSPKEVVARIKAVLKRANI 123

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  +T  IR+    R+  +  +   L  +E  +L + +  + +   + ++ + +
Sbjct: 124 IPLSEESFLKTDKIRINPSTREVYLDDKELKLTPKEYTLLYHFVKYKDQVFTREELLTEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   +   V++HI ++R+KL        + +   +GY  
Sbjct: 184 WG-YDFYGDLRTVDTHIKQIREKLGEY--KKYISTVWGVGYKF 223


>gi|228952982|ref|ZP_04115044.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228806703|gb|EEM53260.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 224

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G  ++    L+  + L  +  ++   I   L+  G   L
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDI--QLDGRKGLSEALEKNYDLILLDLMLPGLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA    P+I ++   S+   +   DSG DD + KP    E+LAR+  I+RR + 
Sbjct: 62  EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEH 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N+         +++  + R      E   L  +E  +L   M N  + + +  +   +
Sbjct: 122 IENKQVSFLTFKDLQLQIESRTITKGDEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N+V+ ++  LR KL +    + + + R  GY +
Sbjct: 182 WG-YDAIVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223


>gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family
           [Hydrogenobacter thermophilus TK-6]
          Length = 224

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 95/219 (43%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V +        +G  +                   +  ++  L       ++
Sbjct: 4   LLVEDDTYVGEMIKEGLTYEGYHVVWVRDGFSAMREALEGDYHLILLDIMLP--KFDGMK 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR    +P+I I+    ++  ++   +G DD + KP   +E+LAR+ A+ RR K  
Sbjct: 62  VLSRIREVKDIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVLRRYKKE 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G + +     +   +G    L  RE ++L+ L  + G+ +++ ++F+ ++G  
Sbjct: 122 EEDIIKVGDLLINPRSYEVYYRGRSIKLTSREFKLLKVLAEHAGEVLSRERLFAKVWGSS 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 NVV+ +I  LR KL ++     + + R +GY +
Sbjct: 182 -YGENSNVVDVYIKNLRNKLEDRP-PKLIHTVRGMGYML 218


>gi|229074576|ref|ZP_04207601.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228708534|gb|EEL60682.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 226

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  S E      S A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIP--GIDGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|310766801|gb|ADP11751.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia sp. Ejp617]
          Length = 229

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++    +   +          +    L      D+  ++  L   G   +
Sbjct: 5   ILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLP--GGSGI 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + ++  +    +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR
Sbjct: 63  QFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E   + +           +   +   E ++L + M +  +  ++ Q+ + 
Sbjct: 123 ISPLAVEEVIEMQGLTLDPSSHRVMSGNQPLDMGPTEYKLLHFFMTHTERVYSREQLLNH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALELNGHDRMVQTVRGTGYRF 225


>gi|163939390|ref|YP_001644274.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229010879|ref|ZP_04168076.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
           2048]
 gi|229132382|ref|ZP_04261236.1| Transcriptional regulatory protein srrA [Bacillus cereus
           BDRD-ST196]
 gi|229166418|ref|ZP_04294174.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
 gi|163861587|gb|ABY42646.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228616992|gb|EEK74061.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
 gi|228651088|gb|EEL07069.1| Transcriptional regulatory protein srrA [Bacillus cereus
           BDRD-ST196]
 gi|228750553|gb|EEM00382.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
           2048]
          Length = 238

 Score =  235 bits (601), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 95/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++  +   G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMP--GKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCKGIREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G    L  +E  +L +L  +  K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKSPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKQSPDAAKMIVTVWGVGYKFEV 235


>gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 242

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   +  ++++  + L          +   +       L
Sbjct: 11  ILIVDDEPAVREALRRSLAFEGYGTQ--DAVDGVDALARMESYAPDLVVLDVQMPRMDGL 68

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IRA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 69  TAARRIRASGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +          +      +R+    R+    G    L R E  +LE  +A+  + + + 
Sbjct: 129 YARATAGAPDTGDVLSFEDLRMDLATREVTRGGRTVELTRTEFTLLEMFLAHPRQVLTRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 189 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 236


>gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEDITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|226325419|ref|ZP_03800937.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
 gi|225206162|gb|EEG88516.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
          Length = 235

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 108/227 (47%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD + ++         +G ++     LE  + +++       +D++ I   ++   
Sbjct: 15  ILVVDDESRMRKLVRDFLEREGYAV-----LEAGDGMEAMDIFYEEKDIALIILDVMMPH 69

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               +  R IR  S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI R
Sbjct: 70  MDGWQTCREIRKESKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVTAILR 129

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R     S++      I +       ++ G+   L  +E  +L Y + N+G  +++ +I +
Sbjct: 130 RTNALASDDLLHADGIEIDKAAHMVKIDGKPIELSYKEFELLTYFVENQGIALSREKILN 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++  +D   +   +++H+ KLR KL +K   D + +   +GY  + 
Sbjct: 190 NVWN-YDYFGDARTIDTHVKKLRSKLGDKG--DYIKTIWGMGYKFEV 233


>gi|170720384|ref|YP_001748072.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758387|gb|ACA71703.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 225

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  ++     E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGESGHVVQAVADAEEALYQAEQFHFDLAVIDLGLP--GMSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL   +R  ++  P++ ++   + Q  ++   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELIGRLRTQAKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVAKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY
Sbjct: 180 PGDEERDPNVIEVLVGRLRRKLEGARGFKPIDTVRGLGY 218


>gi|99081098|ref|YP_613252.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037378|gb|ABF63990.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 229

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        DG  +    + E    L      D+  ++  +       +E
Sbjct: 9   LVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPN--LTGIE 66

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++  +     P+I +S        +   ++G DD V KP    E++ARV    RR+
Sbjct: 67  ICRRLKTRTDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRV 126

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    R E   I + ++            L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPATVGMRLEFDDIILDAETHKVSRSEHPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALTQHGGDDPVRTVRGAGYAL 228


>gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D   A    +G  ++  N       +      DV  ++  L   G    
Sbjct: 3   LLIVEDEKRLADVVAAGLTAEGYGVDVANDGTTGFSMARQNPYDVIILDIMLP--GMNGY 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R +R A  + P++ ++         D  D G DD + KP     + AR+ A+ RR  
Sbjct: 61  QVCRKLREAEVRTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRRSV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G + +    +          L  +E  +LEYL +  G+ V+KT++   ++ 
Sbjct: 121 STAPTVWEFGDLVIDPAAKTVRRGEADISLTAKEFAVLEYLASRAGEVVSKTEVLEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F    + N+VE +IS LR+KL    G   + + R  GY +
Sbjct: 181 -FAYDGDVNIVEVYISYLRRKLDAPFGRQAITTLRGAGYRL 220


>gi|197304013|ref|ZP_03169045.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
           29176]
 gi|197296981|gb|EDY31549.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
           29176]
          Length = 230

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  E       +   D+  ++  L   G    
Sbjct: 5   ILIVEDEESIADLEKDYLELSGFEVEVANDGETGLRRGLAVEFDLIILDLMLP--GVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 63  EICRQIRGQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   +++    R   V GE      +E  +L +L  +     +K ++F
Sbjct: 123 LIGSVVEQNDVIEIRGLKIDRTARRVWVNGEERSFTTKEFDLLSFLAGHPNHVYSKEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 183 REIWDM-ESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRF 228


>gi|154687605|ref|YP_001422766.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
 gi|154353456|gb|ABS75535.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
          Length = 225

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD   +++    +    G  +      E    L  SA  D+  ++  +       
Sbjct: 3   VILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVRLIESAPIDLIILDVMMP--KMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   +R+ + +P++ ++        +  F SG DD + KP    E+ ARV A+ +R +
Sbjct: 61  FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  +    G + +    R     G     LPRRE  +L  L     K  ++ Q+   I+
Sbjct: 121 ITAEKLLTIGTVTLDKQSRTVTRGGGAGLTLPRREFELLFKLAGYPNKTFSREQLIEDIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   +E  V+ HI +LR++   K     + + R LGY  
Sbjct: 181 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGYRF 221


>gi|118479688|ref|YP_896839.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044910|ref|ZP_03112144.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866511|ref|YP_002751889.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|118418913|gb|ABK87332.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024398|gb|EDX63071.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225790658|gb|ACO30875.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 230

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +          G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVGKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|254827167|ref|ZP_05231854.1| resD [Listeria monocytogenes FSL N3-165]
 gi|258599549|gb|EEW12874.1| resD [Listeria monocytogenes FSL N3-165]
          Length = 238

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 97/231 (41%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++  +   G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMP--GKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R     P++ ++        +  F+ G DD + KP   RE++ RV A+ RR K S
Sbjct: 66  VCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125

Query: 123 NNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +                +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFNRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +  +     + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235


>gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
 gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
          Length = 226

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 107/224 (47%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD + ++       G +G ++ E  + +E  E         +  ++  +       
Sbjct: 6   ILVVDDESRMRKLVRDFLGREGYTVLEAGDGMEAMEIFYEDKEIALVILDVMMP--KMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R IR  SQ P+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR  
Sbjct: 64  WQVCREIRQSSQTPVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAILRRSH 123

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V  +    + G I++     + + +G+   L  +E  +L Y + N G  +++ +I + ++
Sbjct: 124 VLGAEEIIDAGGIQINKAAHEVKAEGKQIDLSYKEFELLVYFVENEGIALSREKILNNVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +D   +   +++H+ KLR KL +K   + + +   +GY  + 
Sbjct: 184 N-YDYFGDARTIDTHVKKLRNKLGDKG--NYIKTIWGMGYKFEV 224


>gi|114561672|ref|YP_749185.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332965|gb|ABI70347.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 244

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    I        S++   +L+    +    + D+  ++  L       +
Sbjct: 16  ILLVEDEQDLAKLIILNLKALNYSVDHATTLKQAMHIIEHKKLDLILMDRMLPD--GDGI 73

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R    +VPL+ ++   S    +   ++G DD + KP    E+ ARV A+ RR K
Sbjct: 74  MLCEQLRQDGKEVPLMLLTAKDSEADVVLGLEAGADDYLVKPFSVLELRARVKALLRRGK 133

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    + E   + + S  R+     +   L  RE  +L +L  +  +  ++ Q+  A+
Sbjct: 134 TQHEQTQQIEFNSVSINSSTREVTAFNKALTLTAREFDLLLFLAKHPQQVFSRMQLLEAV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +G ++    E+ V SHI++LR KL       D V +   +GY  
Sbjct: 194 WG-YNYDGYEHTVNSHINRLRNKLSLCSPEHDLVKTVWGVGYKF 236


>gi|21241099|ref|NP_640681.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106398|gb|AAM35217.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 227

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 3/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G S +             + + D+  ++  L  +G   L+
Sbjct: 11  LIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRG--GLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +  
Sbjct: 69  ICRDLRNESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRHD 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            + A    +++  D     V G    L + E R+L  L A  G+  ++ Q+   +Y    
Sbjct: 129 PHGAPAPGLQIDEDACRASVDGRALDLTQVEFRLLRTLAAAPGRVYSREQLMGRLY-ADH 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             V +  V+SH+  LR+KL +  G D V S    GY  +
Sbjct: 188 RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGYRFE 226


>gi|331700970|ref|YP_004397929.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128313|gb|AEB72866.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 229

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   +  ++  E    L++ +   +  ++  +   G   
Sbjct: 3   ILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGQEALTRLRTESDIGLMILDIMMP--GMNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQ+P+I +S        +    SG DD V KP +  E++ARV ++ RR +
Sbjct: 61  IEVVKEVRKDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTE 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  + GP+ +  D  +   + G    L   E  IL  L ++  +  +  +IF
Sbjct: 121 EHVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY I+
Sbjct: 181 ERVW-RQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227


>gi|229011292|ref|ZP_04168484.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228749948|gb|EEL99781.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 102/223 (45%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + L+      V      ++       
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGF--QTYEAVDGLDALRKIEEVRVEMAIIDIMMPNMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 63  DLCYELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +  V  +   LP +E  +L  L +  G+  ++ Q+   ++G 
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D    E  ++ HI++LR+K + +L    + + R LGY ++ +
Sbjct: 182 YDFEGNERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLEVS 224


>gi|58583289|ref|YP_202305.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84625120|ref|YP_452492.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578384|ref|YP_001915313.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58427883|gb|AAW76920.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84369060|dbj|BAE70218.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522836|gb|ACD60781.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 229

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R  R       +P+I ++        +   ++GVDD V KP   RE+LAR+ A+ RR
Sbjct: 63  DLARRWRKEQLTRDIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +     G +R+              P+   E R+L + M +  +   +TQ+   
Sbjct: 123 TREDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGS-VYVEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225


>gi|323972872|gb|EGB68071.1| heavy metal response regulator [Escherichia coli TA007]
          Length = 290

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|237746571|ref|ZP_04577051.1| response regulator [Oxalobacter formigenes HOxBLS]
 gi|229377922|gb|EEO28013.1| response regulator [Oxalobacter formigenes HOxBLS]
          Length = 233

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 101/223 (45%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            ++++D   + +         G + +  ++  E    LQ   R DV  ++  L    G +
Sbjct: 8   ILVVEDEPAIAELVAFSVKSAGWMPVTVYSGTEAWTALQRF-RPDVVLLDWMLPDLSGMR 66

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +L   R  R    +P+I ++     +  +   D G DD + KP   +E++AR+ A+ RR 
Sbjct: 67  LLSRIREHREMKTLPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRK 126

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + +    G + +  +    ++      +   E R+L++LMAN  +  ++ Q+   +
Sbjct: 127 APERAKSLLRAGAVTLDPESCQVKIGNGEIEMGHSEFRLLKFLMANPDRVFSRGQLLDKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      +EE  V+ HI +LRK L  K   + + + R +GY +
Sbjct: 187 W-SNQLDIEERTVDVHILRLRKAL--KGQENLIRTVRGMGYML 226


>gi|229019758|ref|ZP_04176562.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1273]
 gi|229025985|ref|ZP_04182372.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1272]
 gi|228735316|gb|EEL85924.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1272]
 gi|228741540|gb|EEL91736.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1273]
          Length = 241

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 16  ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 74  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 133

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  +   + G + +       E +G    L  +E  IL+  + N+ +   K QI++
Sbjct: 134 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 194 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 240


>gi|24379907|ref|NP_721862.1| putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|290580113|ref|YP_003484505.1| putative response regulator [Streptococcus mutans NN2025]
 gi|14600271|gb|AAK71319.1|AF393849_1 responder protein CovR [Streptococcus mutans]
 gi|24377886|gb|AAN59168.1|AE014984_3 putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|254997012|dbj|BAH87613.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 235

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 101/231 (43%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G   +   + +  E L     E+   I   L+      L
Sbjct: 4   ILIVDDEKPISDIIKFNLAKEGY--DTITAFDGREALSKYEEENPDLIILDLMLPELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R +S VP+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEVRKNSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 122 SNN-----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +               G +++  D    + +G    L  RE  +L +L  + G+ + +
Sbjct: 122 IESAVAEENASGIPEIIIGDLQILPDAFVAKKRGTEVELTHREFELLHHLATHTGQVMTR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 231


>gi|307294613|ref|ZP_07574455.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879087|gb|EFN10305.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 233

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 105/225 (46%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + +  I  F  +   +      E    L      D+  ++  +  +    +E
Sbjct: 7   LLVEDDAALAELLIWHFKREDFEVSHTVDGEEALLLAQETVPDIVLLDWMV--ESLSGIE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R     + VP+I ++     +  +   ++G DD V KP   RE++ARV A+ RR+
Sbjct: 65  VCRRLRRLNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +        + + + G      G+V PL   E R+L++ + + G   ++ ++  ++
Sbjct: 125 RPALAGETLTFSDVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           +G  D  +E   V+ HI +LRK +     + D + + R  GY++D
Sbjct: 185 WGQ-DSDIELRTVDVHIRRLRKAINGDGRYQDIIRTVRSAGYALD 228


>gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 220

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      SS   D+  ++  L  +    L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G + + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GAELIRNVRGLGYMI 216


>gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
 gi|167654411|gb|EDR98540.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
          Length = 224

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +  + +  +     + L      D   I   ++  G   L
Sbjct: 3   LLIVEDEEDLRSILKKKLMKEHYTAD--DCGNGLDALDYINMADYDGIILDIMLPGIDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL + IR   +  P++ ++    ++  +   D G DD + KP    E++ARV  + RR  
Sbjct: 61  ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +NR   G + +  + ++     +   L  +E  +LEY++ N+   +++ QI    + 
Sbjct: 121 ALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVV+ +I  LRKK+    G   + + R +GY +
Sbjct: 181 -YDFEGGSNVVDVYIRYLRKKIDEGFGCKLIHTVRGVGYVL 220


>gi|317472867|ref|ZP_07932175.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316899667|gb|EFV21673.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 224

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +  + +  +     + L      D   I   ++  G   L
Sbjct: 3   LLIVEDEEDLRSILKKKLMKEHYTAD--DCGNGLDALDYINMADYDGIILDIMLPGLNGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL + IR   +  P++ ++    ++  +   D G DD + KP    E++ARV  + RR  
Sbjct: 61  ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +NR   G + +  + ++     +   L  +E  +LEY++ N+   +++ QI    + 
Sbjct: 121 ALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVV+ +I  LRKK+    G   + + R +GY +
Sbjct: 181 -YDFEGGSNVVDVYIRYLRKKIDEGFGCKLIHTVRGVGYVL 220


>gi|225570609|ref|ZP_03779634.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
           15053]
 gi|225160622|gb|EEG73241.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
           15053]
          Length = 241

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++D  +      G +   F + +  + L       +  +   ++        
Sbjct: 24  LIVEDEKNMQDIIVEYMRRGGHTC--FTADDGVDALMILKSNPMDLMILDVMMPHLDGFS 81

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + ++ R  S +P+I ++        L  ++ G DD + KP   + +LA+  A+ RR   +
Sbjct: 82  VCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSPA 141

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    G I V        + G+   L  +E  +L +LM N G+  A+ Q+ + I+G +
Sbjct: 142 PLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRIWG-Y 200

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D       V++HI  LR+KL ++     + +    GY  + 
Sbjct: 201 DFEGTTRTVDTHIKTLRQKLGDEG--KHIVTLIRSGYKFEV 239


>gi|198283275|ref|YP_002219596.1| winged helix family two component transcriptional regulator
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665852|ref|YP_002425862.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247796|gb|ACH83389.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518065|gb|ACK78651.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 243

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++        +G  +    S+E  E +  +    +  ++  L   G+  L 
Sbjct: 11  LVVEDEEGIQELLRVTLQRNGFDVRCEGSVESAEAVLQTWGPQLLVLDWMLP--GKNGLA 68

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             R++R   +    P+I ++        +   +SG DD + KP   RE++ARV A+ RR 
Sbjct: 69  WCRMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALLRRS 128

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +  R   G ++V               L   E R+L   + N  +  ++  +   I
Sbjct: 129 YGGTAAGRVRLGGLQVDLRAHRVYADEVQVHLGPTEFRLLRLFVTNPERVFSRDMLLDQI 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G     VEE  V+ HI +LR+ L +      +++ R  GY 
Sbjct: 189 WGR-QSFVEERTVDVHIRRLRRGLEHHGYAQIIETVRGEGYR 229


>gi|206968679|ref|ZP_03229634.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus AH1134]
 gi|229096888|ref|ZP_04227857.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229115876|ref|ZP_04245274.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|229173099|ref|ZP_04300650.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|229182148|ref|ZP_04309435.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|206735720|gb|EDZ52878.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus AH1134]
 gi|228601322|gb|EEK58856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228610432|gb|EEK67703.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228667619|gb|EEL23063.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228686498|gb|EEL40407.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 237

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 91/231 (39%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +   +    + +    L  + + D+  ++  +  K     
Sbjct: 5   ILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKK--DGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD + KP   RE++ RV  I RR   
Sbjct: 63  ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E   ++++   R   V  +   L  +E  +L  +  +  +  +++Q+
Sbjct: 123 VPIQAKESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
              I+  F      N V   +S+LR+KL      +  + +   +GY  + N
Sbjct: 183 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPN 232


>gi|302060525|ref|ZP_07252066.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato K40]
          Length = 225

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 110/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +RA  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGDQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFN 221


>gi|289643785|ref|ZP_06475893.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506391|gb|EFD27382.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 242

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D  +     +G  +   +S +      + +  D+  ++  L         
Sbjct: 21  LVVDDEEAITDLVVMALRYEGFDVHAVHSGQAALTRVALSPPDLLVLDVMLPD--IDGFM 78

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R   + +P + ++   + +  +     G DD V KP    E++ARV AI RR   
Sbjct: 79  LCQRLRGSGRGMPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELVARVRAILRRAGA 138

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++         + +  + R+    G    L   E R+L YL+AN  K + + Q+   ++
Sbjct: 139 ADSTPGPLRFSDLELDPETREVRRGGRHVELTATEYRLLHYLLANARKVLTRAQLLDHVW 198

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D   E  V+E+++S LR+K+ + +    + + R +GY +
Sbjct: 199 G-HDFGGEARVLETYVSYLRRKI-DPVPPSLIHTVRGVGYVL 238


>gi|283783193|ref|YP_003373947.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|298253961|ref|ZP_06977548.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
 gi|283441704|gb|ADB14170.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|297532104|gb|EFH71079.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
          Length = 246

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      +      ++  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR +  +VP++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      +   + +  D  D    G    L   E ++L YLM N G+ ++K+QI + +
Sbjct: 127 EPDEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+      D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMI 238


>gi|229171692|ref|ZP_04299267.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3]
 gi|228611838|gb|EEK69085.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3]
          Length = 231

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       ++  ++  + + +           D++ ++  L       L 
Sbjct: 6   LVVDDEREIADLVELYLKNENYTVFKYYTAKEALECIDKTELDIAILDIMLPDA--SGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K  
Sbjct: 64  ICQKIRDKHTYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123

Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N       N      + +     +  +  +   L   E  IL  L  N+G  V+  Q+F 
Sbjct: 124 NGVMAQNKNVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFR 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            I+G    +   N +  HI  LR+K+ + +     + +   +GY I+
Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGIGYKIE 230


>gi|184159450|ref|YP_001847789.1| response regulator [Acinetobacter baumannii ACICU]
 gi|239501705|ref|ZP_04661015.1| response regulator [Acinetobacter baumannii AB900]
 gi|260557142|ref|ZP_05829358.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|332876292|ref|ZP_08444067.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183211044|gb|ACC58442.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078315|gb|ABO13289.2| transcriptional regulator protein (OmpR family) [Acinetobacter
           baumannii ATCC 17978]
 gi|260409248|gb|EEX02550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|322509364|gb|ADX04818.1| baeR [Acinetobacter baumannii 1656-2]
 gi|323519388|gb|ADX93769.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735564|gb|EGJ66616.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 228

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +  F+  +         + ++  ++  +       L
Sbjct: 4   IMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPR--MDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+ 
Sbjct: 62  TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLER 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I    
Sbjct: 122 KAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPD 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
              V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 181 SFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFEY 225


>gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 222

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G  ++     E  E     +  D+  ++  L  K    +
Sbjct: 3   ILVVEDEEKLAYIIKRGLTEEGYCIDVVYDGEEAENYAKYSSYDLIILDIMLPKK--DGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ ++   S+   +   DSG DD + KP    E+ ARV ++ RR  
Sbjct: 61  TVCQNIRKENINTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRRES 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   + G + + +  R+  +  +   L  +E  ILEY M N    V +T +   ++ 
Sbjct: 121 FTRNPVLKVGDLTLNTLTREVWMGEKKLKLTPKEYNILEYFMRNPKIVVTRTILEEKMWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + D     NV++ +I +LRKK+ +K G   +++ R  GY +
Sbjct: 181 I-DFEGNSNVIDVYIRRLRKKIGDKEGK-ILETVRGAGYRL 219


>gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
 gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
          Length = 246

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      +      ++  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR +  +VP++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      +   + +  D  D    G    L   E ++L YLM N G+ ++K+QI + +
Sbjct: 127 EPDEETHIIKVADLEINEDSHDVTRCGMPIELSPTEYKLLHYLMDNEGRVLSKSQILNHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+      D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKIDGIEITDDSGKPQKVVPLIETKRGIGYMI 238


>gi|71736926|ref|YP_274577.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557479|gb|AAZ36690.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|330890080|gb|EGH22741.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 227

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLP--GRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 68  DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTSS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++     G ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 128 TDPHTPKG-LQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
 gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
          Length = 238

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +   +  + ++ L    ++   A+   L+  G   L
Sbjct: 5   ILLVEDDDDIATLLRLNLQDEGYQI--VHEADGDQALVQLEKQVWDAVILDLMLPGVDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++ARV A++RR +
Sbjct: 63  EICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQE 122

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R     + +    R+ +++GEV  L  RE  +L Y   + G+  ++  +
Sbjct: 123 AMGQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHPGEVFSRLAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+ R+    D + +    GY  
Sbjct: 183 LEQVWG-YQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKF 229


>gi|104773776|ref|YP_618756.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116513782|ref|YP_812688.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|300812476|ref|ZP_07092902.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|103422857|emb|CAI97517.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093097|gb|ABJ58250.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300496537|gb|EFK31633.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|325125438|gb|ADY84768.1| Response regulator [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 241

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   V       F  +G   +  ++  E  E  Q+  R D   I   L    +  
Sbjct: 3   ILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPR-DFDIITLDLNLPKKDG 61

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + IR  S+ VP+I ++   S    +     G DD V KP     ++AR+ A++RR+
Sbjct: 62  IQVAKEIRRISETVPIIMLTARDSESDQVLGLGVGADDYVTKPFSPIALIARIKALHRRV 121

Query: 120 KVSNNR-------------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            +                  ET  IR+    R+          L  +E  +L  +     
Sbjct: 122 MLEGQPRNLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKPK 181

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++G ++   EE  V++HI KLR+KL  K G   + +   +GY  D
Sbjct: 182 QVFSREQLLELVWG-YEYFGEERTVDAHIKKLRQKLE-KSGPQIIQTVWGVGYKFD 235


>gi|332185405|ref|ZP_08387153.1| response regulator [Sphingomonas sp. S17]
 gi|332014383|gb|EGI56440.1| response regulator [Sphingomonas sp. S17]
          Length = 226

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A     G +++     E   +L S+   D   ++  L       L 
Sbjct: 4   LIVEDEPNLGQQLKATLEGAGYAIDLATDGEEGHFLGSTESYDAIVLDLGLPE--IDGLT 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R  +     P++ ++   S    +   D+G DD V KP    E++AR+ A+ RR   
Sbjct: 62  VLDRWRKEGKTTPVLVLTARDSWSDKVAGLDAGADDYVAKPFQTEELIARLRALIRRASG 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++    G +R+ +        GE   L  +E ++L YL+ ++GK V++T++   IY  
Sbjct: 122 NASSELTAGDVRLDTRSGKVTRAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + N +E  ++++RKKL    G D + + R LGYS+D
Sbjct: 182 -DFDRDSNTIEVFVTRIRKKL----GQDVITTIRGLGYSLD 217


>gi|256544847|ref|ZP_05472219.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
 gi|256399736|gb|EEU13341.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
          Length = 226

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +   +E     +    +    +  +  ++  L   G    
Sbjct: 4   ILIVEDELDLANLIKDYLEKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLP--GMNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ +S        +   D G DD + KP   RE+LARV A  RR +V
Sbjct: 62  EICQNIRIKSTIPILILSAKIDEFDKVKGLDLGADDYITKPFRPRELLARVNAQLRRSQV 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N       +   IR+++     E  G    L R E  +L +L  N  +  ++ Q++  I
Sbjct: 122 FNKENLEIIDLENIRIYTKEYKVEKDGRDLDLSRNEFELLIFLSKNPRQVFSREQLYERI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +G FD   + N V   I++LR+K+ +       + +   +GY  +
Sbjct: 182 WG-FDSYGDLNTVTVTINRLRQKIEDNPKNPKYILTVWGVGYKFE 225


>gi|255973028|ref|ZP_05423614.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255976067|ref|ZP_05426653.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256618840|ref|ZP_05475686.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256958749|ref|ZP_05562920.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256962146|ref|ZP_05566317.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256965344|ref|ZP_05569515.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257078778|ref|ZP_05573139.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082778|ref|ZP_05577139.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|257085479|ref|ZP_05579840.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086608|ref|ZP_05580969.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089665|ref|ZP_05584026.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257415879|ref|ZP_05592873.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257419081|ref|ZP_05596075.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|255964046|gb|EET96522.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255968939|gb|EET99561.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256598367|gb|EEU17543.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256949245|gb|EEU65877.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256952642|gb|EEU69274.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256955840|gb|EEU72472.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256986808|gb|EEU74110.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990808|gb|EEU78110.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|256993509|gb|EEU80811.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994638|gb|EEU81940.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998477|gb|EEU84997.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257157707|gb|EEU87667.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257160909|gb|EEU90869.1| DNA-binding response regulator [Enterococcus faecalis T11]
          Length = 242

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 102/236 (43%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF--EEWLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F ++G      +  +     +L S  + D+  ++  L      
Sbjct: 6   ILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPS--MD 63

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++RR
Sbjct: 64  GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 123

Query: 119 LKVSNNRAE------------TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            +V+    +            T   ++ +  R+  +  ++   L  +E  +L  L     
Sbjct: 124 AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR 183

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 184 QVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 237


>gi|229003269|ref|ZP_04161100.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
 gi|228757987|gb|EEM07201.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
          Length = 237

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 93/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +  +++   + E    L +  + ++  ++  +       +E
Sbjct: 7   LIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKV--DGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R  + +P++ ++        +     G DD + KP    E++AR+ A+ RR    
Sbjct: 65  VCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFLVL 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  +     V G+   L  +E  +L++  +N  +   KTQ+F
Sbjct: 125 GSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230


>gi|171058342|ref|YP_001790691.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775787|gb|ACB33926.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 245

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G       S          A  D+  ++  L   GE  +
Sbjct: 4   ILVVEDEPAIAELISMNLRHAGYDPHTVGSAGEAHEAVRDALPDLVILDWMLP--GESGV 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R  RA ++     +I ++   S Q  +   D+G DD ++KP    E+LAR+ A+ RR
Sbjct: 62  SLARRWRADARTRELSIIMLTARSSEQDMVQGLDAGADDYLSKPFSTAELLARIRAVLRR 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      E GP+R+         Q +   L   E R+L +LM    +  ++ Q+   
Sbjct: 122 KLPEALEAAVEVGPLRLDPAAHRVFHQHDEVTLGPTEFRLLRFLMTYPERVHSRGQLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     +EE  V+ HI +LR  L      + +++ R  GY +
Sbjct: 182 VWGDH-VFIEERTVDVHIKRLRGVLAPYGCAELIETVRGAGYRL 224


>gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
 gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E   + +  E L  +  E    I   ++      +
Sbjct: 9   ILIVEDEVKISRFLQLELQYEGYEIE--QAYDGREGLDKALNEKYDLILLDIMLPKLNGM 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P+I ++        +   D+G DD + KP    E+LAR+    +R K+
Sbjct: 67  EVCRRIRQISDIPIIMLTAKDETTDIVMGLDTGADDYITKPFAIEELLARIRVALKRKKL 126

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +N      + +  D        ++  L + E  +L++ M N+   + + QI + ++
Sbjct: 127 EIEHSNTISIKGLELDLDKHIVSYNQQIIDLTKTEFDLLKFFMENKNIALNRDQILNKVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   + NVV+ ++  LR K+ NK     + + R +GY +
Sbjct: 187 G-FDYLGDTNVVDVYVRYLRTKIDNKYNERFIYTIRGVGYLL 227


>gi|118478544|ref|YP_895695.1| vancomycin response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417769|gb|ABK86188.1| vancomycin response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 234

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       ++  ++  + + +           D++ ++  L       L 
Sbjct: 9   LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDV--SGLT 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K  
Sbjct: 67  ICQKIREKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 126

Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N       N      + +     +  +  +   L   E  IL  L  N+G  V+  Q+F 
Sbjct: 127 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            I+G    +   N +  HI  LR+K+ + +     + +   +GY I+
Sbjct: 187 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIE 233


>gi|251796137|ref|YP_003010868.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543763|gb|ACT00782.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 224

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 102/222 (45%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +   +       +  SA+ D+  ++  +        
Sbjct: 4   ILVVDDDLHIRELISHYLKVEGFEVLEASDGVEALTILDSAKADLVIMDVMMPN--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR H  +P + ++        L  F+ G DD + KP    E++ARV A+ +R ++
Sbjct: 62  ELCAEIRDHYDLPRLMLTAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALLKRYRI 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++++  + G + +       +V G+   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 122 ASSQTVQAGDLILDRKTYVVQVNGQSMTLPLKEFELLFKLASYPGQSFSRGQLIEEIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ HI++LR++         + + R LGY ++ 
Sbjct: 181 YDFEGNERTLDVHINRLRERFPESQHTFRISTIRGLGYRLEV 222


>gi|49483935|ref|YP_041159.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425808|ref|ZP_05602232.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428474|ref|ZP_05604872.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431108|ref|ZP_05607485.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433791|ref|ZP_05610149.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257436707|ref|ZP_05612751.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904264|ref|ZP_06312152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|282906089|ref|ZP_06313944.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909004|ref|ZP_06316822.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911320|ref|ZP_06319122.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914489|ref|ZP_06322275.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282919458|ref|ZP_06327193.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282924835|ref|ZP_06332501.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958444|ref|ZP_06375895.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503567|ref|ZP_06667414.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510582|ref|ZP_06669287.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|293537124|ref|ZP_06671804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|295428264|ref|ZP_06820893.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590773|ref|ZP_06949411.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|49242064|emb|CAG40763.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271502|gb|EEV03648.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275315|gb|EEV06802.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278056|gb|EEV08704.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281884|gb|EEV12021.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284058|gb|EEV14181.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313201|gb|EFB43597.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317268|gb|EFB47642.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282321670|gb|EFB51995.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282325015|gb|EFB55325.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327268|gb|EFB57563.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331381|gb|EFB60895.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595882|gb|EFC00846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|283470960|emb|CAQ50171.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283790593|gb|EFC29410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919969|gb|EFD97037.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|291095233|gb|EFE25498.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466473|gb|EFF08994.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|295127664|gb|EFG57301.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575659|gb|EFH94375.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|312437849|gb|ADQ76920.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195597|gb|EFU25984.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 233

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +      +       + + D+  ++  L  K    ++
Sbjct: 6   LVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKK--DGID 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R +   VP++ ++        +   + G DD + KP   RE++ARV AI RR + 
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E       G IR+  D  +     E+  L  +E  +L YL+  +G+ + +  + +
Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++  ++ A +  +V+ HIS LR KL +       + + R LGY ++
Sbjct: 184 TVWN-YEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229


>gi|329115847|ref|ZP_08244564.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
 gi|326906252|gb|EGE53166.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
          Length = 236

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 18/232 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   + D        +G  ++  F+  E     +   + D+  ++  L       L
Sbjct: 5   LIVDDEKPISDIIKFNLTKEGYDTITAFDGREAVTAFE-EEKPDLVILDLMLPE--LDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I +S   S    +   + G DD V KP  +RE+LARV A  RR + 
Sbjct: 62  EVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +++  D    +  G    L  RE  +L +L  + G+ + 
Sbjct: 122 IETAVAEENAISGTQELTIGNLQILPDAFVAKKYGNEVELTHREFELLHHLANHIGQVMT 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +   ++G +D   +   V+  + +LR+K+ +     + + ++R +GY +
Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232


>gi|306840137|ref|ZP_07472922.1| Protein petR [Brucella sp. NF 2653]
 gi|306404782|gb|EFM61076.1| Protein petR [Brucella sp. NF 2653]
          Length = 253

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 135/225 (60%), Positives = 168/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 27  MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 86

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 87  HRLPARIRERYKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 146

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 147 ASATSGTDGTQLGPIRVFSDGRDPQINGINFPLPRRERRILEYLIANRGRRLNKVQIFSA 206

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 207 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 251


>gi|300931183|ref|ZP_07146528.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|300460990|gb|EFK24483.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|323948330|gb|EGB44317.1| heavy metal response regulator [Escherichia coli H120]
          Length = 290

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 231

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++         +G+ +    S E      +    D+  ++  L   G   LE
Sbjct: 12  LIIEDDDRIRRVVSITLRREGLEVTEAGSGEEGLARLAERPYDIVLLDLVLP--GRSGLE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S  P+I ++        +   ++G DD V KP    E+ AR+ A+ RR   S
Sbjct: 70  VCREIRRVSTTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARIRALARRTGGS 129

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +          GEV PL R E  +L  L   RG+  ++ ++   ++G 
Sbjct: 130 GPRPRIVVGDLEIAPADGVVTRGGEVVPLTRTEFTLLLELATERGRVFSREELLERVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +D   +  +V+ H+ +LRKK+  +      V + R +GY +
Sbjct: 189 YDYFGDSRLVDVHVRRLRKKVEADPAAPTVVTTVRGMGYRL 229


>gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
          Length = 232

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIVDDEAEIADLIEIHLEKEGYHV--VKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   E G + V  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEIGGVIVDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|163942268|ref|YP_001647152.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864465|gb|ABY45524.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 230

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 99/228 (43%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  + EE + +  +     I   ++      L
Sbjct: 5   ILLVEDDISIQEMVETYLVKEGFQVTIAS--DGEEGVNAFLKGSFDLIILDIMMPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ RIIR  S +P++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAIPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  +   + G + +       E +G    L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|330988874|gb|EGH86977.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 227

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLP--GRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 68  DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTSS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++     G ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 128 TDPHTPKG-LQVDEAQYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|221633576|ref|YP_002522802.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermomicrobium roseum DSM 5159]
 gi|221156239|gb|ACM05366.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermomicrobium roseum DSM 5159]
          Length = 239

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G S+   ++ E      + AR D+  ++  L   G    
Sbjct: 4   ILLVEDDDTLQATIRYNLEREGYSVIVADAGEAALEQAAFARPDLVILDIMLP--GLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113
           ++ R +R  S VP++ ++   +    +   + G DD + KP   RE+LARV         
Sbjct: 62  QVCRQLREQSTVPILILTARDTEVDRVLGLELGADDYLTKPFSMRELLARVKALLRRREL 121

Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            A       S +  E GP+R+  + R    +G    L  RE  +L YL  +R +     +
Sbjct: 122 LARELAAGFSPDILEIGPLRIDLEQRRVWREGREVALKPREFDLLAYLARHRERVCRSEE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +  A++G +D   +   +  H+  LR+KL +       +++ R +GY +
Sbjct: 182 LLRAVWG-YDTFGDFRTLAVHVHGLREKLEDDPRRPRLIETVRGIGYRL 229


>gi|113971609|ref|YP_735402.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|113886293|gb|ABI40345.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
          Length = 253

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +         +    SL     L  + R D+  ++  L       L
Sbjct: 23  ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPD--GDGL 80

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + +R   Q +P++ ++       T+   +SG DD + KP    E+ AR  A+ RR  
Sbjct: 81  LLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHL 140

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    E   +R+  D R+        PL  +E  +L +L  +  +  ++TQ+  A+
Sbjct: 141 SATPTRQLIEFEGLRIDLDSREVIAFDNPLPLTAKEFDLLTFLARHPQQVFSRTQLLDAV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +G +     E+ V SHI++LR KL +  G  + V +   +GY  
Sbjct: 201 WG-YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243


>gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 239

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +             D++ ++  L        
Sbjct: 13  LLVVDDEPNIRELLSTSLRFAGFEVVSAGNGRDALAAAELHAPDLAVLDVMLPD--MDGF 70

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++     +  +     G DD V KP    E++AR+ A+ RR +
Sbjct: 71  TVTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  +    G V  L   E ++L YLM N  + ++K+QI   +
Sbjct: 131 PLIDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +D   + ++VES+IS LR+K+  +      + +KR +GY +
Sbjct: 191 W-EYDFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVL 233


>gi|311898335|dbj|BAJ30743.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 244

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +   A  G +G  +   +          + + D+  ++  L   G   LE
Sbjct: 21  LVVEDEPTIAESIAARLGAEGFKVAVAHDGPGAVDGFHTWQPDLVVLDIMLP--GFDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R I+A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 79  VCRRIQAQRPVPVLMLTARDDETDLLVGLGVGADDYMTKPFSMRELAARVNVLLRRVERA 138

Query: 123 NNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              A T        G + +    R   +      L   E  +L  L A     + + Q+ 
Sbjct: 139 QQAARTPALGSLRFGELEIDHVQRRVRLGSGDVHLTPTEFDLLACLAAQPRAVLTREQLL 198

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SH+  LR+K+    G   + +   +GY+++
Sbjct: 199 AEVWDWTDASG-TRTVDSHVKALRRKI----GASWIRTVHGVGYALE 240


>gi|311067831|ref|YP_003972754.1| two-component response regulator YkoH [Bacillus atrophaeus 1942]
 gi|310868348|gb|ADP31823.1| two-component response regulator (YkoH) [Bacillus atrophaeus 1942]
          Length = 225

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G       +           +  +  ++  L   G   L
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYKATIKETGTEGLHAALEEKFALVLLDVMLP--GLSGL 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      P+I ++   S+   +   D G +D V KP    E+LAR+ A  R+  
Sbjct: 64  EVLRRLRKTDMHTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNG 123

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G ++V    R+ +   +   L  RE  +L +L+ +  + + + QI ++++G
Sbjct: 124 SDPGTFLSLGDLQVNEKTREVKRADQEVELTPREFDLLVFLLKHPQQVLTREQILASVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   + NVV+ +I  +RKK+        + + R +GY+I
Sbjct: 184 -FDYLGDTNVVDVYIRYIRKKMDYPYEKQLIHTVRGVGYAI 223


>gi|299066501|emb|CBJ37691.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum CMR15]
          Length = 230

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D   + +         G       + E    L S    D+  ++  L   G+  +   +
Sbjct: 2   EDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLP--GKSGVMFAK 59

Query: 66  IIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
            +RA+    Q+P+I ++     Q  +   D G DD V KP   +E+LAR+ A+ RR   +
Sbjct: 60  ELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRAPQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++++      +R+                     L   E R+L +LM +  +  +++Q+ 
Sbjct: 120 LTDDVVAINGLRLDPATHRVTAMNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++G     VEE  V+ HI +LR  L        +++ R  GY +  N
Sbjct: 180 DQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSTMIETVRGSGYRLARN 227


>gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 251

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 93/225 (41%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +    +        +    D+  ++  L   G    
Sbjct: 29  LLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLG--GF 86

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R     VP++ ++    +   +   D G DD V KP   +E+ ARV A+ RR  
Sbjct: 87  EVCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSG 146

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   NR   G I++ +D            L   E  +L YLM N G+ +++ QI  
Sbjct: 147 GGRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQE 206

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   DE     VV+++I  LR+KL    G   + + R +GY +
Sbjct: 207 RVWNHRDEG--SGVVDTYIYYLRRKLGEP-GQSLIRTVRGVGYQL 248


>gi|229081791|ref|ZP_04214283.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock4-2]
 gi|228701379|gb|EEL53873.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock4-2]
          Length = 230

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +         + G + +       E  G++  L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|225571191|ref|ZP_03780189.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
           15053]
 gi|225160022|gb|EEG72641.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        D   +   +   E  +++  S + D++ ++  L       
Sbjct: 3   ILVVDDEKEIADVIELYLQSDQYDVHKCYTGQEALDYI-GSMKIDLAILDIMLPD--IDG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++ + IR     P+I ++        +     G DD + KP +  E++ARV A  RR  
Sbjct: 60  FQILKQIRGKYTFPVIMLTAKTEYMDKITGLTMGADDYIPKPFNPLELVARVKAQLRRCT 119

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +  + G + +     +         L   E  IL  L  NRGK ++  ++
Sbjct: 120 QYNDGSREEGDIIDFGGLFLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEEL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           F  ++         N V  HI  LR+K+    G  D + +   +GY ++
Sbjct: 180 FEKVWNEQYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVE 228


>gi|254510565|ref|ZP_05122632.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
 gi|221534276|gb|EEE37264.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
          Length = 226

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +D     FG++G  +E         +  +    D   ++  L   G   L
Sbjct: 5   LLIVEDDQDTRDFIAKGFGEEGYVVEVAADGREGLYHATDGGFDAIVLDRMLP--GLDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA   + P++ ++   ++   +    +G DD + KP   +E+ AR+ A+ RR +
Sbjct: 63  SLIKSMRAAGLKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQ 122

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    R     G    L  RE +ILE+ +  + + V++T +   ++
Sbjct: 123 EAEETPTLICRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NVV+ HISKLR++L        +++ R  GY +
Sbjct: 183 D-YHFDPNTNVVDVHISKLRRQLDGDGADPVIETVRGAGYMV 223


>gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium abscessus ATCC 19977]
 gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response
           transcriptional regulatory protein) [Mycobacterium
           abscessus]
          Length = 230

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S++          + ++ R D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVDLAEDGVDALNVIANDRPDALVLDVMMP--KLDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  EVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTT 122

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  +        G + +    R+         L R E  +LE LMAN  + + +++I   
Sbjct: 123 IDESADAATLSFGDLTLDPVTREVHRGTRSISLTRTEFALLEMLMANPRRVLTRSRILEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K   +     + + R +GY +
Sbjct: 183 VWG-FDFPTSGNALEVYVGYLRRKTEAEGELRLIHTVRGVGYVL 225


>gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
          Length = 232

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIVDDEAEIADLIEIHLEKEGYHV--VKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|298247032|ref|ZP_06970837.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549691|gb|EFH83557.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 103/246 (41%), Gaps = 33/246 (13%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +   A    +G ++   N       L    +  +  ++  L   G   L 
Sbjct: 5   LVVEDEVAICNLICAELSAEGHTVYQANDGLQALTLVEQHQPQLIILDWMLP--GLDGLS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R +  +P++ ++        +   + G DD ++KP   RE++ARV AI RR+ + 
Sbjct: 63  VCRRVRLNYLMPILMLTARNEEIDRILGLEVGADDYISKPFSMRELMARVRAILRRVDLD 122

Query: 123 NNRAET----------------------------GPIRVFSDGRDPEVQGEVFPLPRRER 154
              A+T                            GP+ +  + R  ++ GE   L  RE 
Sbjct: 123 QRLAQTLQQARTEPPVAQISPTITPTPVQPPIIRGPLEIDPNARIAKLHGESILLTPREY 182

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
            +L  L ++ G+  ++  +   ++G +D    +  V++H+++LRKKL        + +  
Sbjct: 183 ELLILLASHPGRAFSREFLLQQLWG-YDYDGFDRTVDTHVTRLRKKLGGVGEK--IVTVW 239

Query: 215 FLGYSI 220
            +GY  
Sbjct: 240 SVGYRF 245


>gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 225

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G  +   N  +    L      D+  ++  +       L
Sbjct: 5   ILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPD--LDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R  + +P++ ++   S+   +   ++G DD + KP    E++ARV A+ RRL  
Sbjct: 63  EVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  + +     + V    R              E  +L + M +  + + +  +   ++
Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   E NV+E ++  LR KL  +     + + R  GY +
Sbjct: 183 G-FDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVL 223


>gi|325272764|ref|ZP_08139111.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324102104|gb|EGB99603.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 225

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  +E     E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIIDLGLP--GISGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL   +R+  +  P++ ++   + Q  ++   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQASLDAQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  I +LR+KL  + GF P+D+ R LGY
Sbjct: 180 PGDEERDPNVIEVLIGRLRRKLEGEQGFKPIDTVRGLGY 218


>gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
 gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
          Length = 235

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +  G       D   +      E    L  S   D+  ++  L       L 
Sbjct: 12  LVVDDEKAIVKGIKFSLEQDDAEVSCAYDGEEALELAKSQEFDIILLDLMLP--KIDGLS 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R IR  S VP+I I+        +   + G DD + KP +  E+ AR+ AI RR    
Sbjct: 70  VCRQIREFSNVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIMRRNSFN 129

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + S+     G +R+  DGR   +      L  +E  +LE L+ N  K   +  + + 
Sbjct: 130 LKKEQSDRVIIVGDLRLDRDGRRLFIGDREVNLTAKEFDVLELLVMNPNKVYGRDNLLNI 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           ++G ++   +   V+ HI +LR+K+ +       V +K  +GY
Sbjct: 190 VWG-YEYPGDARTVDVHIRRLREKIEDDPSNPKYVHTKWGVGY 231


>gi|298243980|ref|ZP_06967787.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297557034|gb|EFH90898.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 252

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 99/233 (42%), Gaps = 17/233 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +E  N  E           D+  ++  +   G   LE
Sbjct: 20  LVVDDEENIIEFIRLGLRYEGFQVESANDGETGIATALRINPDIIILDVMMP-PGIDGLE 78

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R +    ++P++ ++    ++  +    +G DD + KP    E+L R+ AI RR 
Sbjct: 79  VCRRLRENPTTREIPILMLTARDEVRDRIAGLRTGADDYLTKPFDFDELLERIRAILRRQ 138

Query: 120 KVS-----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             +            N  E   +R+ +  R+    G +  L   E  +L   M++  + +
Sbjct: 139 GRTKSPQGAAGAENGNMLEFEDLRMNTATREVTRAGRLIELTATEYNLLHLFMSHPRQVL 198

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +  I   ++G ++   E N++E ++  LR+K+ +       + + R +GY +
Sbjct: 199 DRQTILQRVWG-YEFLGETNIIEVYVRYLREKIEDSPSTPRLIQTVRSVGYVL 250


>gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
 gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
          Length = 231

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++             + E  N  E  +    S   D+  ++  +       
Sbjct: 12  ILVVDDEDRMRKLVRDFLVRKQYEVVEASNGEEAVDVFVESNDIDLIILDVMMP--KMDG 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R IR  S+VP+I ++        L  F+ GVD+ ++KP   R ++ARV AI RR  
Sbjct: 70  WEACREIRKISKVPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDAILRRTN 129

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   + G I +        V+GE   L  +E  +L Y + N+G  +++  I + ++
Sbjct: 130 NIGQDQIEQAGDIEINKAAHIVTVKGEPIELSFKEFELLSYFIQNKGIALSRENILNNVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +D   +   +++H+ KLR KL        + +   +GY  + N
Sbjct: 190 N-YDYFGDARTIDTHVKKLRNKLGECG--KYIVTIWGMGYKFEVN 231


>gi|330994125|ref|ZP_08318053.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp.
           SXCC-1]
 gi|329758592|gb|EGG75108.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp.
           SXCC-1]
          Length = 226

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 104/223 (46%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V++       + G  +E  ++ +   ++  S + D+  ++  L G G   +
Sbjct: 3   ILVVEDDPTVRNFVAKGLKEAGHLVELTDNGKDGLFMAVSEKFDLIILDRMLPG-GIDGV 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   IRA +   P++ +S    +   +    +G DD V KP    E+LARV A+ RR +
Sbjct: 62  RLLETIRAQNNTTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRGR 121

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  + E   + +    R     G+   L  RE R+LEYL  + G+ V +T +   +
Sbjct: 122 TEAAPQTKLELADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEGV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H+S+LR+K+    G   + + R  GY +
Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFGTPLIHTIRNAGYML 223


>gi|228989445|ref|ZP_04149432.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
 gi|228770293|gb|EEM18870.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
          Length = 237

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 93/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +  +++   + E    L +  + ++  ++  +       +E
Sbjct: 7   LIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKV--DGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R  + +P++ ++        +     G DD + KP    E++AR+ A+ RR    
Sbjct: 65  VCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFLVL 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  +     V G+   L  +E  +L++  +N  +   KTQ+F
Sbjct: 125 GSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIEVDPSNPKLIQTVWGIGYKF 230


>gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes]
 gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes]
 gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  235 bits (600), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 241

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 102/238 (42%), Gaps = 23/238 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   +          +G  ++   + LE  E   +    D   ++  L   G   +
Sbjct: 5   LIVDDEQSILTLLAFNLEKEGYQVDTALDGLEGYEMAVAH-PYDFIILDLMLPSMG--GM 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R    + P++ ++        +   + G DD + KP   RE+LAR+ AI RR+ 
Sbjct: 62  DICKKLRQEKIEAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMS 121

Query: 121 V----------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                             +   + G I++     +  V+G+   +  +E  +L Y++   
Sbjct: 122 SKSKAEEALKESNSTAEQDELIKVGDIQIDPSQYEVIVRGKKIDVTPKEFELLMYMIKRI 181

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            + +++ Q+  AI+  FD A E  +V+ HIS LR+K+  +      + + R  GY  +
Sbjct: 182 NRILSREQLLDAIWN-FDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGYKFE 238


>gi|302560333|ref|ZP_07312675.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477951|gb|EFL41044.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 229

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 10  LVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLP--GRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|226310397|ref|YP_002770291.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093345|dbj|BAH41787.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G  ++  +S    E L  +   D S I   L   G    
Sbjct: 5   ILIIEDETTIAQLERDYFELNGFQVDLCHS--GSEGLPLAINGDYSLIIVDLQLPGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
           EL   IR   +VP++ +S        +  F+ G DD + KP    E++AR  A       
Sbjct: 63  ELCSQIRQVKEVPILIVSAKKEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLTRYER 122

Query: 117 ---RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              R+ + SN       + +    R   V+ +      RE  +LE+L  +  +   K ++
Sbjct: 123 LTARQAEPSNAEIHIRGLVIDKVSRRVYVRNQEVIFTTREFNLLEFLATHPNRVFNKNEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  I+G+ D + +   V  HI KLR+K+  +      +++    GY  
Sbjct: 183 FERIWGM-DSSGDIATVTVHIRKLREKIEVDPSNPQYIETVWGAGYRF 229


>gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
 gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
          Length = 239

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +             D++ ++  L        
Sbjct: 13  LLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAADLHSPDLAVLDVMLPD--MDGF 70

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++     +  +     G DD V KP    E++AR+ A+ RR +
Sbjct: 71  TVTRRLRAAGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  +    G V  L   E ++L YLM N  + ++K QI   +
Sbjct: 131 PLEDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKAQILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +D   + ++VES+IS LR+K+  +      + +KR +GY +
Sbjct: 191 W-EYDFNGDASIVESYISYLRRKVDIDPDAAALIQTKRGVGYVL 233


>gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
 gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
          Length = 342

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A   ++G+  +          L      D+  ++  +       +
Sbjct: 119 ILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPN--MDGI 176

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 177 EACMKIREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+         E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 297 EAVWEEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 342


>gi|331699380|ref|YP_004335619.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954069|gb|AEA27766.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 229

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    L   +G +     +   +  L+   R     +   L+  G    +
Sbjct: 5   LIVEDEESFADPLAFLLRKEGFTAAVATT--GQSALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R+ S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRSLRSRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGEG 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +      E GP+R+  D     V G   PLP +E  +LEYL+ N G+ + + Q+  
Sbjct: 123 GAEAEGGGGVLEAGPVRMDVDRHVVSVGGADVPLPLKEFDLLEYLLRNVGRVLTRGQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G  D   +   ++ H+ +LR K+  +      + + R LGY  D
Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKVEVDPSVPRHLITVRGLGYKFD 228


>gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 233

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L    + D+  ++  +       +
Sbjct: 10  ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDVMMPN--MDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 68  EVCMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   V+G    L  +E  IL+ L  N+G  ++  +I+
Sbjct: 128 YNMHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 188 EAVW-KDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|256762258|ref|ZP_05502838.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256683509|gb|EEU23204.1| DNA-binding response regulator [Enterococcus faecalis T3]
          Length = 242

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 103/241 (42%), Gaps = 30/241 (12%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-------EGFNSLEFEEWLQSSAREDVSAIEAFLI 54
            ++I+D   V +     F ++G          EG  +     +L S  + D+  ++  L 
Sbjct: 6   ILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTT-----FLASPEKWDMITLDLNLP 60

Query: 55  GKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 + + R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ 
Sbjct: 61  S--MDGMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMK 118

Query: 114 AIYRRLKVSNNRAE------------TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYL 160
           A++RR +V+    +            T   ++ +  R+  +  ++   L  +E  +L  L
Sbjct: 119 ALHRRAEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTL 178

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  
Sbjct: 179 AKKPRQVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKF 236

Query: 221 D 221
           D
Sbjct: 237 D 237


>gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis]
          Length = 245

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      + S  + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPD--IDGF 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+ +    D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMI 238


>gi|29375829|ref|NP_814983.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|229550253|ref|ZP_04438978.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|257422851|ref|ZP_05599841.1| two component system response regulator [Enterococcus faecalis X98]
 gi|293383171|ref|ZP_06629088.1| DNA-binding response regulator PhoP [Enterococcus faecalis R712]
 gi|294780111|ref|ZP_06745484.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300859819|ref|ZP_07105907.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307273452|ref|ZP_07554697.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307277615|ref|ZP_07558707.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307288440|ref|ZP_07568428.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|312899351|ref|ZP_07758684.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|29343290|gb|AAO81053.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44933724|gb|AAS49395.1| response regulator [Enterococcus faecalis]
 gi|229304691|gb|EEN70687.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|257164675|gb|EEU94635.1| two component system response regulator [Enterococcus faecalis X98]
 gi|291079510|gb|EFE16874.1| DNA-binding response regulator PhoP [Enterococcus faecalis R712]
 gi|294452786|gb|EFG21215.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|295112803|emb|CBL31440.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300850637|gb|EFK78386.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306500611|gb|EFM69940.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306505880|gb|EFM75058.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306509979|gb|EFM79004.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|311293502|gb|EFQ72058.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315027504|gb|EFT39436.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315156001|gb|EFU00018.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315160348|gb|EFU04365.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315166770|gb|EFU10787.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315575685|gb|EFU87876.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|323480492|gb|ADX79931.1| two component system response regulator [Enterococcus faecalis 62]
 gi|327534882|gb|AEA93716.1| response regulator [Enterococcus faecalis OG1RF]
 gi|329577105|gb|EGG58578.1| transcriptional regulatory protein ResD [Enterococcus faecalis
           TX1467]
          Length = 239

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 102/236 (43%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF--EEWLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F ++G      +  +     +L S  + D+  ++  L      
Sbjct: 3   ILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPS--MD 60

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++RR
Sbjct: 61  GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 120

Query: 119 LKVSNNRAE------------TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            +V+    +            T   ++ +  R+  +  ++   L  +E  +L  L     
Sbjct: 121 AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 181 QVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 234


>gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 224

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +          +  S++  FN  E  ++L  +A  D+  ++  +       
Sbjct: 3   ILVVEDEPTLNKIIAKRLKIEAYSVDCAFNGKEALDYL-DAAEYDLLIVDIMMPE--MDG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + +R   S+VP++ ++   S Q  +   DSG DD + KP    E+LAR+ ++ RR 
Sbjct: 60  LTLVKKLRDGGSRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRRS 119

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +  R     + + +        G+   L  +E  +L+YL+ N+G  +++ QI   
Sbjct: 120 NAQQTARTRLTLADLTLDTRTHQVTRGGQEIALTPKEFSVLDYLLRNQGTVLSREQILEH 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  F      N+V+ +I  LRKK+        + + R  GY +
Sbjct: 180 AWD-FSYEGYSNMVDVYIKTLRKKIDRDFEPKLLHTVRGTGYVL 222


>gi|229058210|ref|ZP_04196598.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
 gi|228720074|gb|EEL71658.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
          Length = 238

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++  +   G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMP--GKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCKGIREKKATPIIMLTAKGEEINRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKQSPDAAKMIVTVWGVGYKFEV 235


>gi|169794777|ref|YP_001712570.1| OmpR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157895|ref|YP_002320693.1| two component signal transduction system response regulator
           [Acinetobacter baumannii AB0057]
 gi|215482321|ref|YP_002324503.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB307-0294]
 gi|301345681|ref|ZP_07226422.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB056]
 gi|301511858|ref|ZP_07237095.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB058]
 gi|301594996|ref|ZP_07240004.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB059]
 gi|332852228|ref|ZP_08434033.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332870450|ref|ZP_08439214.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|169147704|emb|CAM85567.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter baumannii AYE]
 gi|213057055|gb|ACJ41957.1| two component signal transduction system response regulator
           [Acinetobacter baumannii AB0057]
 gi|213985926|gb|ACJ56225.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB307-0294]
 gi|332729358|gb|EGJ60698.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332732187|gb|EGJ63455.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 228

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +  F+  +         + ++  ++  +       L
Sbjct: 4   IMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTNFQQRKPNLMILDLMVPR--MDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+ 
Sbjct: 62  TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLER 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I    
Sbjct: 122 KAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPD 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
              V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 181 SFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFEY 225


>gi|313123384|ref|YP_004033643.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279947|gb|ADQ60666.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 241

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   V       F  +G   +  ++  E  E  Q+  R D   I   L    +  
Sbjct: 3   ILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPR-DFDIITLDLNLPKKDG 61

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + IR  S+ VP+I ++   S    +     G DD V KP     ++AR+ A++RR+
Sbjct: 62  IQVAKEIRRISETVPIIMVTARDSESDQVLGLGVGADDYVTKPFSPMALIARIKALHRRV 121

Query: 120 KVSNNR-------------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            +                  ET  IR+    R+          L  +E  +L  +     
Sbjct: 122 MLEGQPRNLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKPK 181

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++G ++   EE  V++HI KLR+KL  K G   + +   +GY  D
Sbjct: 182 QVFSREQLLELVWG-YEYFGEERTVDAHIKKLRQKLE-KSGPQIIQTVWGVGYKFD 235


>gi|149375578|ref|ZP_01893348.1| response regulator, OmpR-family protein [Marinobacter algicola
           DG893]
 gi|149360283|gb|EDM48737.1| response regulator, OmpR-family protein [Marinobacter algicola
           DG893]
          Length = 236

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 100/232 (43%), Gaps = 17/232 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       D G++         +  L+     D+  +   L+  G   L 
Sbjct: 6   LIVEDNPGIGELVRMHVADLGMN--AVLCDRGDTGLERFREGDIDLVVLDLMLPGMDGLS 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR+    VP++ ++   +    +   + G DD + KP    E+ ARV A++RR+  
Sbjct: 64  VCREIRSGPGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARVKALFRRVDA 123

Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            ++              +T  +R+    R   V  +   L  RE  +L +  ++ G+  +
Sbjct: 124 MSSSSGETSGPEELGELDTEGLRIDPTRRRVFVWEQEVELTAREFDLLWHFASHPGRVFS 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + Q+   ++G ++    E+ V +HI++LR K+       + +++   +GY  
Sbjct: 184 RVQLLDKVWG-YNHEGYEHTVNTHINRLRGKIEQDPARPEFIETVWGVGYRF 234


>gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 251

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++    + + EE L    +E    +   ++       
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYTV--VTAADGEEALTKFRQEQPDLVVLDVMMPKLDGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 70  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIEK 129

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+   + G IR+ ++ R      E   L   E  +LE L+   G+  ++ +I 
Sbjct: 130 TSTSGIPSSGVIQVGNIRIDTNKRQVYKGDERIRLTGMEFMLLELLVGRSGEPFSRAEIL 189

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY
Sbjct: 190 EQVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGY 235


>gi|227529596|ref|ZP_03959645.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350495|gb|EEJ40786.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 238

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 108/235 (45%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +G   E  ++ +E EE   ++  E DV  ++  L  K   
Sbjct: 3   ILMIEDNHSVCEMMAMFFKKEGWQYEFAYDGVEAEEKFSAAPHEWDVILLDLNLPKK--D 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++   IR  S  VPLI ++   S    +   + G DD V KP     ++AR+ A+ RR
Sbjct: 61  GMQVAADIRRISTTVPLIMLTARDSESDQVLGLEIGADDYVTKPFSPITLIARIKALQRR 120

Query: 119 LKVSNNR-----------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGK 166
            ++S  +            +T   ++ +  R+  + G+    L  +E  +L+ L +   +
Sbjct: 121 SQLSATQGAQHSNQDRFDIKTKHFKMDTKTREVYMYGKPVKDLTPKEFDLLKTLASKPRQ 180

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++Q+   ++  ++   +E  V++HI KLR+KL   +G   + +   +GY  D
Sbjct: 181 VFTRSQLLQLVWD-YEYYGDERTVDAHIKKLRQKLE-AVGPQVIQTVWGVGYKFD 233


>gi|28868885|ref|NP_791504.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971922|ref|ZP_03400022.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato T1]
 gi|301384491|ref|ZP_07232909.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato Max13]
 gi|302134652|ref|ZP_07260642.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852124|gb|AAO55199.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213923347|gb|EEB56942.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato T1]
 gi|330877107|gb|EGH11256.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330966567|gb|EGH66827.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016773|gb|EGH96829.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 225

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 110/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +RA  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFN 221


>gi|22538097|ref|NP_688948.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           2603V/R]
 gi|25011986|ref|NP_736381.1| hypothetical protein gbs1948 [Streptococcus agalactiae NEM316]
 gi|76788392|ref|YP_330516.1| phosphate regulon transcriptinal regulatory protein PhoB
           [Streptococcus agalactiae A909]
 gi|76797930|ref|ZP_00780191.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Streptococcus agalactiae 18RS21]
 gi|77405067|ref|ZP_00782167.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           H36B]
 gi|77412880|ref|ZP_00789084.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           515]
 gi|22535003|gb|AAN00821.1|AE014280_13 phosphate regulon response regulator PhoB [Streptococcus agalactiae
           2603V/R]
 gi|24413529|emb|CAD47607.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563449|gb|ABA46033.1| phosphate regulon transcriptinal regulatory protein PhoB, putative
           [Streptococcus agalactiae A909]
 gi|76586704|gb|EAO63201.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Streptococcus agalactiae 18RS21]
 gi|77161020|gb|EAO72127.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           515]
 gi|77176361|gb|EAO79130.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           H36B]
          Length = 225

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D A +++  +      G   +GF+S E           D+  ++  L   G+  
Sbjct: 1   MIYCVEDDADIREMMLYTLQMAGFKAQGFSSSELFWEAIQEKVPDLILLDIMLP--GDDG 58

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L +   +R   Q    P+I  +   S    +   D G DD + KP    E+++R+ A+ R
Sbjct: 59  LTILERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLR 118

Query: 118 RLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  +++A    G + +       +   E   L  +E  +L     N  +   + ++  
Sbjct: 119 RSRQVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLD 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G      E   V+ HI  LR KL        + + R +GY ++
Sbjct: 179 KVWGE-QFLGETRTVDVHIGTLRTKLGEDGY--LIATVRGVGYRLE 221


>gi|326790239|ref|YP_004308060.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541003|gb|ADZ82862.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 236

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 97/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+IDD   + +        +G  +  + S+E  +     +  D+  ++  L   G   +
Sbjct: 6   IVVIDDEEHILELIKYNLEANGFIVSTYTSVEAMQKSIGESPIDLILLDIMLP--GMDGI 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               I R H Q   VP++ +S        +   + G DD + KP   RE++ARV AI RR
Sbjct: 64  TALNIFRNHEQLGCVPVLLVSAKAEEIDKILGLELGADDYITKPFSVRELVARVKAILRR 123

Query: 119 L---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        ++      +++  +      + E   L  +E  IL+ LM+N+GK + 
Sbjct: 124 ADRNEVPTKKTEEDHFLVHQDLKLDIESHLLTFKDEPIELTYKEFEILKLLMSNKGKVLT 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  I   ++G +D   E   V+ HI  LR K       + +++ R +GY  
Sbjct: 184 REVILDKVWG-YDYYGETRTVDVHIRYLRAKFEAYGIGEYIETVRGVGYRF 233


>gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 228

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +     G  +    +    + L+   +E V  +   ++       
Sbjct: 7   ILIVDDEFDMLELIGSFLKRQGFHI--ITASNGMDALRQLEKEPVDLVVLDIMMPDMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  SQ+P++ ++     +  +   + G DD + KP   RE+ AR+    RR++ 
Sbjct: 65  EVCQRIRQTSQIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIETTLRRIRG 124

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +R + G I +  DGR   +  E   L RRE  +L +L+ N+G+  ++ Q++  ++
Sbjct: 125 LSLKRSRIQFGDIEIDQDGRQVYIHQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                +     V++HI  LR KL  K     + +   +GY  +
Sbjct: 185 ESHSTSGSLRTVDTHIKTLRLKL--KGAERHIKTVWGVGYKFE 225


>gi|158320425|ref|YP_001512932.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140624|gb|ABW18936.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 237

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 99/231 (42%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + +    +  + + D+  ++  L   G   +
Sbjct: 9   ILVVDDEEHILELIRFNLEKEGYDVLLCENGDECIPMIQNNKVDLVVLDLMLP--GMDGI 66

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + +     +  +P+I ++        +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 67  QICKKLNRMDEYENLPIIMLTAKSEETDRVLGLELGADDYITKPFSVRELIARIRAVLRR 126

Query: 119 LKVSNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +   +               + +  +     + G    L  +E  +L+ L  NRGK ++
Sbjct: 127 SESKQDSSRYENKEKSIVVKDLIIDVEEHTVSIDGVYVELTLKEFELLKMLSENRGKVLS 186

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +   I+G ++   E   V+ HI  LR+K+ +    + +++ R +GY +
Sbjct: 187 RNLLLDEIWG-YEYFGETRTVDVHIRHLRRKIGDDKSNEYIETIRGIGYKM 236


>gi|94970017|ref|YP_592065.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552067|gb|ABF41991.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D A +           G ++  F +             ++  ++  +   G   LE+
Sbjct: 7   VVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVP--GADGLEI 64

Query: 64  PRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R IR   + +  P+I ++   S    +   D G DD + KP   RE++AR+ A+ RR +
Sbjct: 65  CRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLRRFE 124

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G I + +      V+G +      E R+LEYL  + G+   + Q+  A++
Sbjct: 125 RPLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLLDAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
                 V    V+ ++ ++R+K+         + + R  GY  + 
Sbjct: 185 -RETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEV 228


>gi|156744264|ref|YP_001434393.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235592|gb|ABU60375.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 245

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D +++ +     F   G  +           +    R D+  ++  L   G    
Sbjct: 4   ILLVEDDSVLLETLSYNFERAGFQVTTAADGLTGLEMVRQVRPDLIILDVMLP--GIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117
            + R +   + +P++ ++        +   + G  D V KP    E+LARV AI R    
Sbjct: 62  SVCRAVAKETAIPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNER 121

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R   ++N    GP+++  + R    Q     L ++E  +L  LM N G  +++  +   
Sbjct: 122 QRQAPTSNVLSIGPVQLDRNSRRVWYQDREVELSQKEFDLLACLMHNAGVALSRDLLLER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G  D       ++ H+  LR+KL  +      + + R +GY  
Sbjct: 182 VWGN-DFLGSNRTIDVHVRWLREKLEPDPANPVLIRTVRGIGYCF 225


>gi|315644229|ref|ZP_07897399.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280604|gb|EFU43893.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 225

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 100/221 (45%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++        +G ++  F + + +E     A E +      ++       
Sbjct: 4   ILIADDDAHIRELLQYHLQSEGYTV--FTAADGKEASARLAEEQIHLAVVDVMMPNMDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   IR +   P+I ++    L      F  G DD + KP   +E+L R+ A+ RR ++
Sbjct: 62  QLCEEIRRYYDFPVILLTAKDQLVDKEKGFAVGTDDYLTKPFEPKELLFRIKALLRRYQM 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N ++       +     + +  G++  LP +E  +L  L +   +  ++ ++   I+G 
Sbjct: 122 VNADKIHLNETTIDRKSYEVQGHGKMLMLPMKEFELLSQLASYPDRTFSREELIQLIWGT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   ++  V+ HI +LR++  ++ G   + + R +GY ++
Sbjct: 182 -DFEGDDRTVDVHIKRLRERFADRSGDFQIRTIRGVGYKLE 221


>gi|330963562|gb|EGH63822.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 224

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +           G S     N L+    +++SA   +  ++  L   G   
Sbjct: 7   ILIVEDEPKLATLMRDYLIAAGYSTHCLANGLDVVPAVRASA-PQLILLDIMLP--GRDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R+ S VP+I I+        L   D G DD + KP   RE++ARV AI RR  
Sbjct: 64  MDICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTS 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++       ++V  +       G    L   E R+L     + G+  ++ Q+   +Y  
Sbjct: 124 ATDP-LAAKGLQVDEEHYQASFNGVALDLTPVELRLLATFARSPGRVFSRDQLLDRLYSD 182

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
               V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 183 H-RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 223


>gi|330950384|gb|EGH50644.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 227

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIMLP--GRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 68  DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRSSS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S      G ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 128 SEPHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|257124968|ref|YP_003163082.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257048907|gb|ACV38091.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 229

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +          +   +    + E         + D+  ++  +  K     +
Sbjct: 5   LIADDNKQIVSILSEYCKKNNFIVSTVFNGEDALKEVEENKFDIVLLDVMMPKK--DGFD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I I+        +   + G DD + KP    EI+AR+ AI RR+   
Sbjct: 63  VCREVRKFSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRRITPK 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N+ +E       + +  +    ++  E+  L ++E  IL  L  N+ K   +  +   I+
Sbjct: 123 NDDSEKIFSFDNLEIDLNNFTVKINNEIISLTKKEIEILWTLATNQNKVFTRENLLDLIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           G FD   E   V++HI +LR K+ N       + +   +GY  D
Sbjct: 183 G-FDYFGESRTVDTHIKRLRAKMDNYEHKKWNIKTIWGVGYKFD 225


>gi|329115001|ref|ZP_08243756.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
 gi|326695444|gb|EGE47130.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
          Length = 229

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G ++      E         R D+  ++  L   G   L
Sbjct: 6   LLVVEDDPALSRLIGYNLEKQGYAVRVVGDGESALEEVRQKRPDLLLLDWMLP--GISGL 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R   +    P++ +S       T+   D+G DD + KP     + ARV A+ RR
Sbjct: 64  EVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRR 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L  ++       + +       E  G +  L   E R+LE+ M N GK  ++ ++    +
Sbjct: 124 LPPADKTLRFDTLVMDRVSHKVERGGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHAW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                 VE   V+ HI +LR+ L      D + + R  GY++D
Sbjct: 184 ERS-SFVELRTVDVHIRRLRQTLNEGDEQDIIRTVRARGYALD 225


>gi|311278058|ref|YP_003940289.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308747253|gb|ADO47005.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 219

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G +L+ F   E  +    +A  D   ++  L   G   L
Sbjct: 3   ILLVEDDKLIGDGLRAGLVKMGFTLDWFTRGEEGKAALLAAPYDAVILDLTLP--GIDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  RA   Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILRAWRAQGRQEPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  + G + +  D       G   PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQATNALQHGKVTLNPDSLTATFDGAPLPLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 SWDDDVSSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|289178438|gb|ADC85684.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 250

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      + S  + D+  ++  L        
Sbjct: 14  IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPD--IDGF 71

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 72  TVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 131

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 132 EQVEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+ +    D           +++KR +GY I
Sbjct: 192 W-QYDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMI 243


>gi|258510063|ref|YP_003183497.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476789|gb|ACV57108.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 224

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++   +    +G  +    + +  E   + ARE V      ++       
Sbjct: 4   ILVADDEPHIRELVRSTLEREGHRV--VEAADGREAADAVAREPVQLAVIDVMMPEVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R    VP++ ++        +     G DD + KP    E++ARV A+ RR ++
Sbjct: 62  ELTRWLREERDVPILLLTALGETSHKVRGLRLGADDYLVKPFAPEELVARVEALLRRYRI 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++   +   +R+ SD  + E  GE   LP +E ++L  L A+ G+ +++ ++   ++G 
Sbjct: 122 RADGALDLAVLRLLSDTYEVEANGERMALPPKEFQLLFTLAASAGRTLSRDKLIEEVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +D A +E  V+ HI +LR K    +    + + R LGY ++ N
Sbjct: 181 YDYAGDERTVDVHIKRLRVKFPEDVYPFRIRTVRGLGYRLEVN 223


>gi|149377685|ref|ZP_01895421.1| Phosphate regulon transcriptional regulatory protein phoB
           [Marinobacter algicola DG893]
 gi|149358038|gb|EDM46524.1| Phosphate regulon transcriptional regulatory protein phoB
           [Marinobacter algicola DG893]
          Length = 230

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++                        L    + D+  ++  L   G   +E
Sbjct: 7   LIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKQPDLILLDWMLP--GTSGVE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++   A +++P+I ++        +   + G DD + KP   RE++AR+ A+ RR 
Sbjct: 65  LARRLKKEEATAEIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRT 124

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E   + +   G     +     +   E R+L++ M ++ +   ++Q+   +
Sbjct: 125 TPPGVETPIEVDGLTLDPVGHRVTTETGALNIGPTEYRLLQFFMTHQERVYTRSQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L ++     + + R  GY  
Sbjct: 185 WGG-NVYVEERTVDVHIRRLRKALGDQYDH-LIQTVRGTGYRF 225


>gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 220

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +G       +G +++             S   D++ ++  L       L
Sbjct: 3   LLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSETFDLAVLDLGLPR--MDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R +R + S +P++ ++   + +  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  QVLRRLRDSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +    QG+   L  +E ++L  L++  G+ + +  +   +YG
Sbjct: 121 GRAQALIEHAGISLNPGTQQVSYQGKPVALTPKEYQLLHELLSPPGRVMTRDHLMQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +EA E N +E HI  LRKK       D + + R +GY ++
Sbjct: 181 WSEEA-ESNTLEVHIHHLRKK----FSTDLIRTIRGVGYLVE 217


>gi|229156123|ref|ZP_04284221.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
 gi|228627306|gb|EEK84035.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
          Length = 231

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEKV 60
           ++++D   + D       ++  ++  F     +E L+   +   D++ ++  L       
Sbjct: 6   LIVEDEREIADLVELYLKNENYTV--FKYYTAKEALECIDKNVLDLAILDIMLPDV--SG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K
Sbjct: 62  LTICQKIRDKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYK 121

Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N       N      + +     +  +  +   L   E  IL  L  N+G  V+  Q+
Sbjct: 122 KYNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           F  I+G    +   N +  HI  LR+K+ + +     + +   +GY I+
Sbjct: 182 FHEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIE 230


>gi|227891876|ref|ZP_04009681.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299823|ref|ZP_07206059.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|227866339|gb|EEJ73760.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300852576|gb|EFK80224.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 229

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G  +E  +N  E    L  +    +  ++  +       
Sbjct: 3   ILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQ--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  SQ+P++ +S        +     G DD V KP +  E++ARV ++ RR +
Sbjct: 61  MEVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAE 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   ++ E GP+ +  D  +   ++G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 HNVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+ +   G   + +   +GY I+
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227


>gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 223

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 102/218 (46%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    + + +E L S+       I   L+      +
Sbjct: 5   ILIIEDDPKISRLIEIELKFEGFEVSF--AYDGKEGLNSAKYNSYDLIILDLMLPKMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S+VP+I ++    +   +   D G DD + KP  + E++AR+ A+ RR K 
Sbjct: 63  EVCKRIREFSEVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKALIRRTKK 122

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            NN+ E     +++     +      +  L +RE  +L+YL+ N+G  +++ +I   ++G
Sbjct: 123 RNNQEEFVYEDLKINYSTYEVFRGETLISLSKREFELLDYLVLNKGIVLSRDKILENVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
            F+    +N+++ +I  LR K+        + + R LG
Sbjct: 183 -FEYIGNDNILDLYIKYLRDKIDKPYERKFIQTVRGLG 219


>gi|228924304|ref|ZP_04087554.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835330|gb|EEM80721.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 231

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       ++  ++  + + +           D++ ++  L       L 
Sbjct: 6   LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNALDLAILDIMLPDA--SGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K  
Sbjct: 64  ICQKIRDKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123

Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N       N      + +     +  +  +   L   E  IL  L  N+G  V+  Q+F 
Sbjct: 124 NGVTAQNENVIVHAGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            I+G    +   N +  HI  LR+K+ +       + +   +GY I+
Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDMADNPKYIKTVWGIGYKIE 230


>gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
 gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
          Length = 235

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 102/230 (44%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G ++   +  +  + LQ    +   A+   L+      L
Sbjct: 4   ILLVEDDHDIAALLRLNLEDEGYAIT--HQPDGGKALQCLETQPWDAVILDLMLPNVDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   ++G DD + KP   +E++AR+ A++RR +
Sbjct: 62  EICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQ 121

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +    +   + +    R   + G+   L  RE  +L +   + G+  ++  +  
Sbjct: 122 AMGQAQTAGHIQAHGLTLDPLARTVRLHGQDVDLTPREFELLYFFARHPGEVFSRLALLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI-DWN 223
            ++G +     E+ V +HI++LR K+  +    + + +    GY   + N
Sbjct: 182 QVWG-YQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKFAELN 230


>gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
 gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
          Length = 238

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +   +  +  + L     +   A+   L+  G   L
Sbjct: 5   ILLVEDDEDIATLLRLNLQDEGYQI--VHEADGGQALARLETQVWDAVILDLMLPGVDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++ARV A++RR +
Sbjct: 63  EICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQE 122

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R     + +    R+ +++GE   L  RE  +L Y   + G+  ++  +
Sbjct: 123 AMGQNLLMDAGRLSCHGLSIDPLSREVKLRGETVDLTPREFDLLYYFARHPGEVFSRLAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+ R+    D + +    GY  
Sbjct: 183 LEQVWG-YQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKF 229


>gi|158319282|ref|YP_001511789.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139481|gb|ABW17793.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G  +   ++      +       +  ++  +       +
Sbjct: 6   ILVVDDEKEIRDLIEIYLKNEGFQIIKASNGREALEILEEEEVHLIILDIMMPE--MDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR    +P+I +S        +    +G DD V KP +  E++ARV +  RR   
Sbjct: 64  KACMKIREEKNMPIIMLSAKAEDMDKIFGLTTGADDYVTKPFNPLELIARVKSQIRRYTK 123

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            NN          E   + +       ++ GE   L  RE  ILE L  NRG   +  +I
Sbjct: 124 LNNNAAAATGEEIEIDDLVINVSTHQVKINGEEIKLTPREFDILELLARNRGMVFSMERI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++   D     N V  H+ K+R+K+  +      + +   +GY I+
Sbjct: 184 YQKVW-KEDFFDSPNTVMVHVRKIREKIEKDPRNPQYIKTVWGVGYKIE 231


>gi|315499320|ref|YP_004088124.1| two component transcriptional regulator phob, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315417332|gb|ADU13973.1| two component transcriptional regulator PhoB, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 231

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 101/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G  +      +    + +  + D+   +  +       +
Sbjct: 7   IIIAEDEDALSTLLQYNLEKEGYEVGVAIDGDEALMMINERQPDLLVCDWMMPKV--SGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +RA ++    P++ ++        +   D+G DD V KP    E++AR+ A+ RR
Sbjct: 65  EVTRRLRAQTETRNLPIVMLTARSEETDRIRGLDTGADDYVIKPFSMVELVARIRAVLRR 124

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++   S +R   G I +       +  G    L   E ++L+YLM +  +  ++ Q+  A
Sbjct: 125 IRPGLSEDRVTFGEIVIDRLSHRVQRSGRDVHLGPTEYKLLDYLMQHPKRVFSREQLLDA 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  VE   V+ HI +LRK L     +DP+ + R  GYS+D
Sbjct: 185 VWGN-DVYVEARTVDVHIGRLRKALNADTDYDPIRTVRSAGYSLD 228


>gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +           G  +           L  S + D+  ++  L       +E
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPE--MDGIE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 60  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119

Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                E            G +++  D  +  +Q ++  L  +E  +L +L  +RGK  ++
Sbjct: 120 KAEIIEEITEDSEARILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q+   ++  +D   E  +V+ H+S LR K+  +      + + R  GY ++
Sbjct: 180 DQLLDTVWN-YDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei
           TW08/27]
 gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma
           whipplei TW08/27]
          Length = 227

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D   A     G  +    +         +   D+  ++  L        
Sbjct: 6   ILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPD--MSGF 63

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + +R A  + P+I +S   S +  +     G DD V KP    EILARVAAI RR K
Sbjct: 64  AATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTK 123

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G + +  +  +  ++G +  L   E ++L Y M N  + ++K+QI   ++
Sbjct: 124 IDDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + ++VES+IS +R+KL        + +KR  GY +
Sbjct: 184 D-YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIM 224


>gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
          Length = 224

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +         D G  ++     E   +L  S   D   ++  L    G  V
Sbjct: 3   LLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R  R    +P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 63  LEAWR--RNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V+++++   +Y 
Sbjct: 121 GHAQSELTCGPVTLDTRTGKVSVSGNPVKMTSHEYRLLSYLMHHSGRVVSRSELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLD----CDVIQTVRGLGYLL 216


>gi|57865389|ref|YP_189511.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A]
 gi|251811932|ref|ZP_04826405.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875223|ref|ZP_06284096.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367070|ref|ZP_06613742.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81673433|sp|Q5HLN2|HSSR_STAEQ RecName: Full=Heme response regulator hssR
 gi|57636047|gb|AAW52835.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A]
 gi|251804531|gb|EES57188.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295988|gb|EFA88509.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318800|gb|EFE59174.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733807|gb|EGG70131.1| heme response regulator HssR [Staphylococcus epidermidis VCU028]
 gi|329735102|gb|EGG71398.1| heme response regulator HssR [Staphylococcus epidermidis VCU045]
          Length = 224

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 6/226 (2%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +++DD   +     +    + +    F S E       +   D++ ++  +   G 
Sbjct: 1   MINCLIVDDDKKLLQYVSSHLERESIQTHTFTSGEASLDFLENKNVDIAIVDIMM--SGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              EL + ++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR
Sbjct: 59  DGFELCQTLKDDYHIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRR 118

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ ++N  + G + +     +  V  +   LP +E ++L  L +N      +  I   I
Sbjct: 119 YQINADNELQLGNLILNQSYMEITVGSKTMNLPNKEFQLLFLLASNPKHIFTRDDIIEKI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   ++  V+ HI +LR++L        + + R  GY +D N
Sbjct: 179 WG-FDYEGDDRTVDVHIKRLRQRLSKLKSSVSIQTVRGQGYRVDQN 223


>gi|311068829|ref|YP_003973752.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310869346|gb|ADP32821.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 240

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 90/232 (38%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++              E   +   +E +      D   I   L+  G   +
Sbjct: 9   ILVVDDEARIRRLLKMYLER--EEYEIEEAENGDEAIVKGLETDYDLILLDLMMPGTDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++        +  F++G DD + KP   RE++ RV A+ RR   
Sbjct: 67  EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++         +      + +  D       G    L  +E  +L +L     K   + +
Sbjct: 127 TSYFNANTTTKDVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPGAAKKIVTVWGVGYKFEV 237


>gi|294629682|ref|ZP_06708242.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833015|gb|EFF91364.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 229

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLP--GRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
          Length = 248

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 22  ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 80  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 139

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  S +  E G + +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 140 LNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 200 FQQVW-ADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 247


>gi|226309596|ref|YP_002769490.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092544|dbj|BAH40986.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   ++    A    +G       S E    L+     D+  ++  L   G    
Sbjct: 6   IAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLP--GMNGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IRA S+ P+I +S        +   + G DD + KP   RE++ARV    +R K 
Sbjct: 64  EFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWKQ 123

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + AE      + +  + R     GE   +  +E ++L  L  +  +  ++ ++ S I+
Sbjct: 124 MKSHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELLSLIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD    + VV+  I ++RKKL       P+++    GY +
Sbjct: 184 G-FDYFGSDRVVDDLIRRIRKKLDKI----PLETVWGFGYRL 220


>gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
 gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
          Length = 237

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L +    ++  ++  +       +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMP--KIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCKKLRDKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905]
 gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905]
          Length = 247

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +           L +    DV  ++  L   G   +
Sbjct: 27  ILVVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATIEAFDVLLLDVMLP--GINGI 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  SQVP+I I+   ++   +   D+G DD + KP    E+LAR+  I RR   
Sbjct: 85  EICRRVRTQSQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        I +     +  VQG    L + E  +L+ L+ ++ +   +  I +++
Sbjct: 145 QEPANSEFLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  +E NVV+ +I  LR KL        +++ R +GY +
Sbjct: 205 WG-YDTDIETNVVDVYIRHLRTKLPGDTNA-YIETVRGVGYVM 245


>gi|163846454|ref|YP_001634498.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524229|ref|YP_002568700.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163667743|gb|ABY34109.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448108|gb|ACM52374.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 233

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +           L       +  ++  L   G   L
Sbjct: 5   ILVVDDEPGIVKIARDYLERAGFQVISAGDGPTALRLARQEHPALMVLDLMLP--GMDGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R +R      ++P+I ++        L   + G DD + KP   RE++ARV A+ RR
Sbjct: 63  DVTRALRQDPLTARLPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVLRR 122

Query: 119 LKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + S +   + + G + +  + R     GE   L   E  +L  L +  G+   + Q+  
Sbjct: 123 SEGSTSPGKQIQIGGLVIDLECRSVRRDGETIELTATEFDLLAVLASAPGRPFTRAQLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            +Y   +    +  +++HI  LR+K+       P  + +   +GY  
Sbjct: 183 RVYNT-EYTGFDRTIDAHIKNLRRKIEPDSNGPPRLILTVYGVGYKF 228


>gi|116750082|ref|YP_846769.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699146|gb|ABK18334.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 226

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G +     S E      +    D+  ++  L       +E
Sbjct: 6   LIVEDEPAIVDNIQYALETEGFATVCLVSGEPVLTFLARDTVDLIILDIGLPD--MSGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR     P+I ++        +   + G DD V KP   RE+ ARV A+ RR  V 
Sbjct: 64  LCKEIRKSHSTPVIFLTARTDEVDRVVGLEIGADDYVTKPFSPRELSARVRAVLRRTHVR 123

Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++ A T  +  V    R     G    L R E  IL+  +   G   ++ Q+   ++   
Sbjct: 124 DHCAPTPHVFEVNDSKRRIAYHGRTLDLSRYEYEILKTFIRRPGHIYSRDQLMELVWEQP 183

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           + +++   V++HI  +R KLR      DP+ + R +GYS+  N
Sbjct: 184 ETSLD-RTVDAHIKNIRAKLRVIAPESDPIVTHRGMGYSLREN 225


>gi|304407578|ref|ZP_07389230.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343529|gb|EFM09371.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 233

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 92/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G S       E    +  +   D+  ++  +       L
Sbjct: 5   ILIVDDDRQIAELVDIYLRNEGYSTAIAGDGEEALRMFEAQPFDLIVLDVMMPR--MDGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R       VP++ +S        +    +G DD + KP +  E+ ARV ++ RR
Sbjct: 63  ELCRRLRRDKSAETVPILMVSAKAEDMDKIMGLMTGADDYMTKPFNPLELTARVKSLLRR 122

Query: 119 LKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               +  A+         G +++       E  G +  L   E  IL  L +  G+  + 
Sbjct: 123 SYQYSKPAKSEDDGSLFIGGLKMDRTTHKVEADGRLLHLTSTEFGILYLLASQPGRVFSA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +IF  ++         N V  HISKLR KL  + G   + +   +GY ID
Sbjct: 183 EEIFQHVW-REKYFESNNTVMVHISKLRDKLEQETGDKLIATVWGVGYKID 232


>gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905]
          Length = 227

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++    +  +    +E F +    E      RE +  +   ++   E    
Sbjct: 5   LIVDDEQDMRNLIEMMLNNS--DIETFTAASGTEAYDIIVREKIDLVLLDVMMPHEDGFV 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA S VP+I ++   +    +     G DD + KP  H E++AR+ A+ RR   +
Sbjct: 63  VCQSIRAMSNVPIIFLTARDANDDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122

Query: 123 NNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      GPI++    R   V G+  PL  +E  +L   M N G    + Q+   I
Sbjct: 123 IAELQQKYVVFGPIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + D       V++HI  LR KL  K     + +   +GY  D
Sbjct: 183 WDI-DYVGGTRTVDTHIKTLRIKLG-KEAAAHIQTVWGVGYRFD 224


>gi|294812933|ref|ZP_06771576.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325532|gb|EFG07175.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 260

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 41  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLP--GRDGIE 98

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 99  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEEP 158

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 159 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 217

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 218 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 256


>gi|297192126|ref|ZP_06909524.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151222|gb|EDY67354.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 257

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 34  LVVEDDATIVDAIAARLRAEGFLVQTALDGPAAVDAADAWQPDLMVLDVMLP--GFDGLE 91

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 92  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 151

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 152 ALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 211

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 212 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 253


>gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
 gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
          Length = 253

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S+           L  + R D+  ++  L   G    
Sbjct: 21  ILIVEDDPTLAQILSYSLEQRGYSVWTAQEGRHAIMLARTIRPDLIILDLMLP--GIDGR 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R+IR  S  P++ ++   S    +  F  G DD V KP   RE+ AR+ A+ RR   
Sbjct: 79  DVCRLIRKWSSAPILVLTARDSEDDIVALFQEGADDYVVKPFRTRELFARIDALLRRSAE 138

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N    G + +F D      +G    L  RE  +L  L+   G+   + ++   ++G
Sbjct: 139 TTAGNVLTAGTLVIFRDEHRVVYRGREVHLAPREFALLTALVERAGRVCTRQELLDLVWG 198

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              + V+   V+ HI ++R+ L     G + + +   +GY  
Sbjct: 199 Q--DVVDLRNVDVHIHRIREALGGEPDGSNLIRTVHGIGYRF 238


>gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
 gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
          Length = 231

 Score =  234 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +    ++G  +E          L +S   D+  ++ +L    E  +
Sbjct: 5   ILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPV--EDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  R  ++  P++ ++   ++   +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 63  QLLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPG 122

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++    E   IR   + +     G    L  +E  +L + + N GK +++T+I+  ++ 
Sbjct: 123 QASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWD 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                   N +E H+ +LR KL    G   + + R  GY ++
Sbjct: 183 DS-YDGLSNTLEVHVKELRHKLE-ACGPRVIQTLRGRGYVLE 222


>gi|289664195|ref|ZP_06485776.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668785|ref|ZP_06489860.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|325918854|ref|ZP_08180934.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325534945|gb|EGD06861.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 229

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R  R      ++P+I ++        +   ++GVDD V KP   RE+LAR+ A+ RR
Sbjct: 63  DLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +     G +R+              P+   E R+L + M +  +   +TQ+   
Sbjct: 123 TREDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGS-VYVEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225


>gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis]
          Length = 241

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 99/234 (42%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +  E       + + D+  ++  L       +
Sbjct: 5   ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLP--KLDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE+ ARV AI RR +
Sbjct: 63  EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +    +E            G +++  D  +   +     L  +E  +L YL  ++G+ + 
Sbjct: 123 IRAPSSEMKNDEMEGQIVIGDLKILPDHYEAIFKESQLELTPKEFELLLYLGRHKGRVLT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLR-KKLRNKLGFD-PVDSKRFLGYSID 221
           +  + SA++  +D A +  +V+ HIS LR  K+ N       + + R LGY ++
Sbjct: 183 RDLLLSAVWN-YDFAGDTRIVDVHISHLRPTKIENNTKKPIYIKTIRGLGYKLE 235


>gi|84495357|ref|ZP_00994476.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384850|gb|EAQ00730.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 244

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +        +G  +    +           + D   ++  L       +E
Sbjct: 22  LVVDDESNLTELLSMALRYEGWEVRAAATGLKAVKAAREFQPDAVVLDMMLPDF--DGME 79

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA +  VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR  V
Sbjct: 80  VLRRMRADNDAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALMRRTTV 139

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S++    G + +  D  +    G    L   E  +L YLM N  + ++K QI   +
Sbjct: 140 VADESSSIIAVGDLTMDEDSHEVTRGGVEIHLTATEFELLRYLMRNPKRVLSKAQILDRV 199

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + + R +GY +
Sbjct: 200 WN-YDFGGQANVVELYISYLRKKI-DAGRTPMIHTMRGVGYVL 240


>gi|220928969|ref|YP_002505878.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999297|gb|ACL75898.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 237

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   V D        DG  +    +      L +S   D+  ++  L       L
Sbjct: 6   ILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDT--NGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R  ++ P++ +S   +    +     G DD + KP    E++AR+ A  RR ++
Sbjct: 64  ELCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRI 123

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N+             + +        V  +   L  +E  IL  L  +     + TQ+
Sbjct: 124 LTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+G+ D   +   V  HIS LRKK+  +      + + + +GY +D
Sbjct: 184 YDHIWGV-DNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLD 231


>gi|304317062|ref|YP_003852207.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778564|gb|ADL69123.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 229

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 96/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            + IDD   + D   A    +G S+  F        + +  S + D+  ++  L   G  
Sbjct: 3   ILAIDDEEKILDVIKAYLEREGYSV--FTETNGANAINTFKSLKPDLVILDLMLP--GLS 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E+   IRA S+VP++ ++        +  F  G DD + KP   RE+  RV AI RR 
Sbjct: 59  GEEICSKIRAISKVPILMLTAKVEEDDKVYGFSIGADDYLTKPFSPRELTMRVKAILRRT 118

Query: 120 KVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K      +      G + + +   + +  GE+  L   E ++L  +  N  +   + ++ 
Sbjct: 119 KDDMALNDIFSFNDGDLVIDTRSYEVKKSGEIVNLTPNEYKLLTVMAQNPNRVFTRGELI 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI-DWN 223
             + G +D    +  +++HI  LR+K+ +       + +    GY   + N
Sbjct: 179 EKVMG-YDFEGFDRTIDAHIKNLRQKIEDDPKNPVYIKTVYGAGYKFGEEN 228


>gi|199597340|ref|ZP_03210771.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258539273|ref|YP_003173772.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591856|gb|EDY99931.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257150949|emb|CAR89921.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 243

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +   +   N+ + EE L     A +    I   L      
Sbjct: 3   LLMIEDNTSVAEMMAMFFQKEKWEV--VNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMD 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++ + IR  S+ VPLI ++   +    +   + G DD V KP     ++AR+ A++RR
Sbjct: 61  GMQVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 120

Query: 119 LKVSNNR---------------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMA 162
            +V                    ET   ++ +  R+  + G+    L  +E  +L  L  
Sbjct: 121 AEVGAEAGAEQATPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSK 180

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 181 SPKQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 237


>gi|189423658|ref|YP_001950835.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189419917|gb|ACD94315.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 226

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G   +   +    E L+++ RE    I   L+  G    E
Sbjct: 5   LIVEDERDLAELLAYNLEKEGY--QALVTGTGVEGLETARRELPDLILLDLMLPGMMGTE 62

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +   +R       +P++ ++        +  F+ G DD + KP   RE++ R+ AI RR 
Sbjct: 63  VCSALRHSDKTRGIPVLMLTARGDEIDRVVGFEMGADDYIVKPFSMRELMLRIRAILRRS 122

Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  E     G I +        V G    L   E ++L YL  + G+ + +  +  
Sbjct: 123 SQEPDTTERQITMGTIVIDCASHRVTVAGSEIELTSTEYKLLLYLAEHGGRVMKRELLLQ 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G ++   +   V++H+++LR KL +    + + + R  GY ++
Sbjct: 183 DVWG-YNFVGDTRTVDTHVTRLRNKLGDAG--EMIKTVRGFGYKLE 225


>gi|257069207|ref|YP_003155462.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256560025|gb|ACU85872.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 231

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 97/224 (43%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   + +    +    G  +    +G ++LE    L    R D+  ++  L   G
Sbjct: 10  ILVVDDDQAIAEMVGIVLRGKGYEVATSPDGASALETFPRL----RPDLVLLDLMLP--G 63

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +E+ R +R  S VP+I ++        ++  ++G DD + KP    E++AR+ A  R
Sbjct: 64  MDGIEVCRRLRRESGVPIIMLTARTDTADVVEGLEAGADDYLTKPFEPEELVARIKARVR 123

Query: 118 RL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R  + +  +   G + +  DG +     ++  L   E  +L  L     +   +  +   
Sbjct: 124 RSEEPTTEQLTIGDLTIDVDGHEVRRGDQLISLTPLEFDLLTQLARKPWQVFTRDVLLRD 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
           ++G +  + +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 184 VWG-YRHSADTRLVNVHVQRLRSKIEHDPENPSIVVTVRGVGYR 226


>gi|75910288|ref|YP_324584.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704013|gb|ABA23689.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 225

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 103/225 (45%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           F+L++D   +         D+  +++     E      ++   D+  ++  L       +
Sbjct: 3   FLLVEDDERIAASLTEALTDNNYAIDVAGDGEEGWDFITAFDYDLILLDVMLP--KLNGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R     +P++ ++   S    +   D+G DD V KP   +E+LAR+ A+ RR  
Sbjct: 61  ELCQRLRQRGYGLPVLMLTARDSSTDKVLGLDAGADDYVIKPFDLKELLARIRALLRRGN 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   E G +R+         + ++  +  +E ++LE  + N G  +++ QI   ++ 
Sbjct: 121 TTISTFLEWGGLRLDPANCTVTYKEQLLLMTPKEYQLLELFLRNNGYVLSRRQILDHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
             D   ++  V+ HI  +R+KL+      D +++   LGY ++ N
Sbjct: 181 SIDPPGQD-TVKVHIRGIRQKLKAAGAKDDFIETVYGLGYRLNQN 224


>gi|291537655|emb|CBL10767.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291537790|emb|CBL10901.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 223

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++       + G  +E F       + +   +   S I   ++  GE  L
Sbjct: 4   IYIVEDDINIREIERYALKNSGYEVEEFEG--SASFFKRLEKNIPSLILLDIMLPGEDGL 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++   IRA      VP+I ++   S    +   D G DD + KP    E+++RV A+ RR
Sbjct: 62  DILTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALLRR 121

Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               N  ++     I +  D     V G++  L  +E  +L+YLM N+G  +++ +I   
Sbjct: 122 TSRMNEDSQLIHEDILMDMDKHAVTVAGQLCELTFKEFELLKYLMLNQGIVLSRDKIMDQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G F+   E   V+ HI  LR+KL        + + R +GY I+
Sbjct: 182 VWG-FEYEGESRTVDMHIKTLRQKLGAAGS--CIKTVRNVGYMIE 223


>gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
 gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces clavuligerus ATCC 27064]
 gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +      G +G +++G         L      D   ++  L   G   L
Sbjct: 3   ILVVEDDPRLMELLCRGLGGEGFAVDGTGDGAHALELAQENEYDAIVLDVMLP--GMNGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R +    P++ ++         +  D+G DD V KP  +  ++AR+ A+ RR +
Sbjct: 61  RVCARLRENRIWTPVLMLTARDGEYDEAEGLDTGADDYVTKPFSYIALVARLRALVRRGR 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E G +RV    R  E  G   PL  RE  +L YL A RG+ VAKT+I   ++G
Sbjct: 121 RERPPVIEIGDLRVDPATRRCERSGTPVPLTAREFGVLWYLAAQRGEVVAKTEILDHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + NVVE ++S LR+K+    G   + + R  GY ++
Sbjct: 181 --DFEGDVNVVEVYVSALRRKIDTPFGRRTIHTVRGAGYRLE 220


>gi|226313781|ref|YP_002773675.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226096729|dbj|BAH45171.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++       ++G + +E  +  E  + L+S A + +  ++  +       
Sbjct: 4   IMVVDDDPHIRELVSVFLRNEGFTIVEAVDGQEALDKLESVAAQ-LVILDIMMPN--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R +R H   PL+ ++        +  F+ G DD + KP   +E++ RV A+ +R +
Sbjct: 61  WELCRKLREHYDFPLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALLKRYR 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++++ + G + +           + + +P +E  +L  L +  G+ +++ Q+   I+G
Sbjct: 121 IAASHQVQAGKLILDRKTFAVASGTKTWTIPLKEFEMLFKLASYPGQTISREQLIEQIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D    E  V+ HI++LR++    +    + + R LGY ++
Sbjct: 181 -YDFEGNERTVDVHINRLRERFPEAMYGFLIRTVRGLGYRLE 221


>gi|289424225|ref|ZP_06426008.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428903|ref|ZP_06430583.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129921|ref|YP_003580584.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|289154922|gb|EFD03604.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289157904|gb|EFD06127.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291375523|gb|ADD99377.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|313765549|gb|EFS36913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772902|gb|EFS38868.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793076|gb|EFS41143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802476|gb|EFS43698.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806491|gb|EFS44998.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313811042|gb|EFS48756.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814457|gb|EFS52171.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815050|gb|EFS52764.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817360|gb|EFS55074.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821896|gb|EFS59610.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824208|gb|EFS61922.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826576|gb|EFS64290.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313828760|gb|EFS66474.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831805|gb|EFS69519.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834651|gb|EFS72365.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313840118|gb|EFS77832.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314915811|gb|EFS79642.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917083|gb|EFS80914.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921359|gb|EFS85190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926710|gb|EFS90541.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931318|gb|EFS95149.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314954858|gb|EFS99264.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958794|gb|EFT02896.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961083|gb|EFT05184.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964489|gb|EFT08589.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314969588|gb|EFT13686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974654|gb|EFT18749.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977150|gb|EFT21245.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314980434|gb|EFT24528.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314985752|gb|EFT29844.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987275|gb|EFT31366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989181|gb|EFT33272.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078496|gb|EFT50527.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082041|gb|EFT54017.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315082819|gb|EFT54795.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086175|gb|EFT58151.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315087760|gb|EFT59736.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315097486|gb|EFT69462.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099937|gb|EFT71913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101750|gb|EFT73726.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315110294|gb|EFT82270.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327331428|gb|EGE73167.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA2]
 gi|327333415|gb|EGE75135.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA3]
 gi|327334938|gb|EGE76649.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL097PA1]
 gi|327445567|gb|EGE92221.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327447187|gb|EGE93841.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449779|gb|EGE96433.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327454628|gb|EGF01283.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456700|gb|EGF03355.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327457024|gb|EGF03679.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328755683|gb|EGF69299.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328756463|gb|EGF70079.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328758807|gb|EGF72423.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328761843|gb|EGF75355.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL099PA1]
 gi|332674761|gb|AEE71577.1| sensory transduction protein RegX [Propionibacterium acnes 266]
          Length = 226

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++    +   +G  +    +    + L+  +      +   L+  G    E
Sbjct: 5   LIIEDEESYREATAFMLRKEGFEVN--TAANGADGLEIYSHNGADIVLLDLMMPGLPGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R    V +I ++   S    +   + G DD V KP  HRE++AR+ A+ RR    
Sbjct: 63  VCRQLRQRGNVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGPE 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++VS +  E   +R+  +  +  V G    L  +E  +LE L+ N G+ + +  +   ++
Sbjct: 123 IEVSPDVLEESGVRMDVERHEVSVGGTAVRLALKEFDLLEVLLRNAGRVMTRASLIDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G  D   +   ++ HI +LR K+ +       + + R LGY  
Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEDDPSRPVRIITVRGLGYKF 224


>gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
 gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
          Length = 224

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D   +          +  S++  F+  E  ++L ++A  D   ++  +       
Sbjct: 3   ILIAEDERDLNQIITERLKKEHYSVDSCFDGEEALDYL-AAAPYDAVILDIMMP--KLDG 59

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + R +R  +   P++ ++   S++  +   D+G +D + KP    E+LARV  + R+ 
Sbjct: 60  LSVLRKMRNKNENTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVRKT 119

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E G + V  D       G+   L  +E  +L Y++ N G  +++ ++   ++
Sbjct: 120 AAVQKTCYEVGGLEVHVDTHQVLRNGKEIALSSKEFALLRYMVQNEGIVLSREKLEQHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +D     NVV+ +I  LRKK+        + + R  GY +  N
Sbjct: 180 N-YDYMGSSNVVDVYIRYLRKKIDEGFEPKLIHTVRGAGYVLRVN 223


>gi|289748982|ref|ZP_06508360.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T92]
 gi|289689569|gb|EFD56998.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T92]
          Length = 198

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 9/192 (4%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
            L    R     +   L+  G    ++ + +RA S VP+I ++   S    +   + G D
Sbjct: 8   ALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGAD 67

Query: 97  DVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151
           D V KP   RE++AR+ A+ RR      ++S+   E+GP+R+  +     V G+   LP 
Sbjct: 68  DYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPL 127

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           +E  +LEYLM N G+ + + Q+   ++G  D   +   ++ H+ +LR K+      +PV 
Sbjct: 128 KEFDLLEYLMRNSGRVLTRGQLIDRVWGA-DYVGDTKTLDVHVKRLRSKIEADPA-NPVH 185

Query: 212 --SKRFLGYSID 221
             + R LGY ++
Sbjct: 186 LVTVRGLGYKLE 197


>gi|229825839|ref|ZP_04451908.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
 gi|229789859|gb|EEP25973.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
          Length = 232

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +     A    +G +       E    L          ++  +        
Sbjct: 4   ILIADDNADITKVLAAYTSKEGYNPVIATDGEEALKLFDEVSPSAVLLDVMMP--KMDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA S VP+I ++        +   D G DD + KP    E++AR+ A+ RR+  
Sbjct: 62  EVCRKIRAKSNVPIILVTARGEGFEKIMGLDIGADDYIVKPFSPSEVMARLRAVLRRMVA 121

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + N  +   + +  D     + GE   L ++E   +  L  N  K   +  +
Sbjct: 122 PESSANVANENFIKIDNLEINLDEYSLSIGGEKIALTKKEIETMWTLAENPNKVFTRDNL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             +++G FD   +   V+SHI +LR KL      +  + +   +GY  D
Sbjct: 182 LDSLWG-FDYFGDSRTVDSHIKRLRAKLDTVEHPNWCIKTIWGVGYKFD 229


>gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 223

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 96/224 (42%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++  +++   + E   ++  S   D+  ++  L  K    L
Sbjct: 3   ILVVEDEKKVASFIKRGLEEENFTVDIAANGEEGLYMAESNHYDLILMDIMLPKK--DGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + +R      P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR  
Sbjct: 61  TVIKELRSKEVTTPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K          +R+           +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 KDRGAEIYFADLRLDPVTHKVWRADKEIDLTAKEYGLLEYFMRNPNQVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +      N+++ +++ LRKK+        + + R +GY +  +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDKDYSKKLIHTIRGVGYVLKED 223


>gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 235

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +           + D++ ++  L        
Sbjct: 10  LLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPD--MDGF 67

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++     +  +     G DD V KP    E++AR+ A+ RR  
Sbjct: 68  TVTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++         + +  D  +    GEV  L   E ++L YLM N  + ++K QI   +
Sbjct: 128 SLDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + ++VES+IS LR+K+        + +KR +GY +
Sbjct: 188 W-EYDFNGDASIVESYISYLRRKIDVGGREKMIHTKRGVGYML 229


>gi|86610276|ref|YP_479038.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558818|gb|ABD03775.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 247

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++       + G  + +  +  +  E + +  R D+  ++  L       
Sbjct: 24  LLVVDDEDAIRETVALALEEQGYQVLQAADGRQALEMVHTVERLDLMILDLMLPS--LNG 81

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R++R      P++ ++   S    +   + G DD + KP   RE++AR  ++ RR 
Sbjct: 82  LDLCRLLRREGNTIPILMLTAKSSETDRVVGLELGADDYLTKPFGMRELIARCRSVLRRQ 141

Query: 120 KVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +++          G + +F+      V+G       +E R+LE  M+N  +   + Q+  
Sbjct: 142 QLAQASDATVLRYGDLCMFTQECRVLVRGVEVSFSPKEFRLLELFMSNPRRVWTREQLLE 201

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 202 RIWG-SDFMGDSKTVDVHIRWLREKLELDPSNPEYLVTVRGFGYRF 246


>gi|319949856|ref|ZP_08023868.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
 gi|319436481|gb|EFV91589.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
          Length = 226

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G   E             + + D+  ++  L   G+  +
Sbjct: 5   ILVVDDDAALAEMLTIVLRGEGFETEIVGDGVQAIETFRAVQPDLVLLDLMLP--GKSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R IRA S+VP++ ++        +   +SG DD + KP   +E++AR+ A  RR + 
Sbjct: 63  DVCREIRAESRVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRGED 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +          G   PL   E  +L  L     +   +  +   ++G 
Sbjct: 123 EPSETLHIGDVTIDVPAHTVTRDGTPIPLTPLEFDLLVELARKPRQVFTREVLLEHVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +  + +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 182 YRHSADTRLVNVHVQRLRAKIEKDPENPEVVLTVRGVGYK 221


>gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 241

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 93/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++   +  +    L          ++  L       +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNYACILLDLMLPE--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R H   P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR + 
Sbjct: 63  EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++         +  E   + + +D        +   L  +E  +L YL     K   + Q
Sbjct: 123 TSAEQSEPHARDIIEFNHLLIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSEDAAQMIQTVWGVGYKFEV 233


>gi|170742557|ref|YP_001771212.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196831|gb|ACA18778.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 227

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +++     E   +L  +   D   ++  L  + + V 
Sbjct: 3   LLIVEDDRDLNRQVVTALEQAGYAVDKAFDGEEGAYLGETEPYDCIILDMGLPKQ-DGVT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L    RA  + P+I ++        ++ FD+G DD V KP H  E+LARV AI RR   
Sbjct: 62  VLSGWRRAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++++   GP+ + +      V G    L   E R+L YLM + G+ V++ ++   +Y  
Sbjct: 122 HASSQISAGPVTLDTRSGRVFVNGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + N +E  + +LRKKL      D + + R LGY ID
Sbjct: 182 -DFDRDSNTIEVFVGRLRKKL----AVDLIQTVRGLGYLID 217


>gi|311744313|ref|ZP_07718117.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312486|gb|EFQ82399.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 334

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 17/227 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGK 56
           + V+++D   + D        DG  +    +G   L+       + R  +  ++  L   
Sbjct: 111 LVVVVEDEPAIADLVRLYLSRDGYGVHVERDGLRGLDA----VRTLRPSLVLLDVGLP-- 164

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G   LE+ R +RA     P++ ++        +     G DD V KP   RE++ARVAA+
Sbjct: 165 GIDGLEVCRRLRAADDWTPVLFVTARDDEVDRVVGLQLGADDYVTKPFSPRELVARVAAV 224

Query: 116 YRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR            G +RV    R   V+     L   E  +L  LM   G+ + + Q+
Sbjct: 225 LRRSTGVTGGAVLVVGAVRVDPGSRQVWVEEREVVLTATEFDLLLALMRRPGQVLRREQL 284

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G  D +     V+ H++++R KL +     P+ + R +GYS+
Sbjct: 285 LADVWGEADYSG-SRTVDVHVAQVRAKLGDA---SPIRTHRGVGYSV 327


>gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 226

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V++        +G ++      E    L       ++ ++  +   G+   
Sbjct: 5   ILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVMMP--GKNGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R IR    +P+I ++    ++     F +G DD + KP    E+L R+ A+ RR + 
Sbjct: 63  ELCREIREFYDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALLRRYQM 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS          +       +V+ E+  LP +E  +L  L +   +   + Q+   ++G 
Sbjct: 123 VSKQIIVLNDTVIDRISHVVKVKEELIHLPLKEFELLAQLASFPDRIFTRDQLLELVWGG 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D   +   ++ HI +LR+K   K     + + R LGY ++ 
Sbjct: 183 -DTESDSRTIDVHIKRLREKFTEKTNDFVISTVRGLGYKLEV 223


>gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 255

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G ++           +    +  +  ++  +   G   L
Sbjct: 26  ILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMP--GMDGL 83

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LARV ++ RR  
Sbjct: 84  EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 143

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V +N+           G + +  + RD    G    L R E  +L+ L+ N+ K + + Q
Sbjct: 144 VESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 203

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G  D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 204 ILEEVWGC-DFPTSGNALEVYIGYLRRKTELEGEDRLIHTVRGVGYVL 250


>gi|309806478|ref|ZP_07700483.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 03V1-b]
 gi|308167151|gb|EFO69325.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 03V1-b]
          Length = 234

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L  K    L
Sbjct: 5   ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    + +I ++   +    +   + G DD V KP  +RE++ARV A  RR ++
Sbjct: 63  EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       N     G + +  +    E  G    L  RE  +L YL  + G+ + +  + 
Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKTGTNIELTHREFELLRYLAQHMGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +      +  ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYV 228


>gi|318078413|ref|ZP_07985745.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 245

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++AH  VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + V    R   V+GE   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|258543034|ref|YP_003188467.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634112|dbj|BAI00088.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637172|dbj|BAI03141.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640224|dbj|BAI06186.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643281|dbj|BAI09236.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646336|dbj|BAI12284.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649389|dbj|BAI15330.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652375|dbj|BAI18309.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655433|dbj|BAI21360.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-12]
          Length = 225

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V++       + G  +E     +    L +S + DV  ++  L G G + L 
Sbjct: 4   LLVEDDQTVRNFVAKGLAEAGHLVEQAEDGKNGLSLATSEKFDVIILDRMLPG-GVEGLH 62

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + +R  ++  P++ +S    +   +    +G DD V KP    E+ AR+ A+ RR + 
Sbjct: 63  ILQTLRNQNNTTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRNRN 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R   G + +    R+ +  G+   L  RE R+LE+LM + G+ V +T +   ++
Sbjct: 123 EAQPQTRLTIGDLEIDLLSRNVKRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEGVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR+K+        V + R  GY +
Sbjct: 183 D-YHFDPQTNVIDVHISRLRQKIDRPFHHPLVHTIRNAGYML 223


>gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 232

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +    + +  E +++   E+   +   ++      L
Sbjct: 3   ILVVDDEQAVRESLRRSLRFNGYEV--LTANDGLEAVETVRAENPELLILDVMMPNMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++    +   +   D+G DD + KP    E+LARV ++ RR  
Sbjct: 61  EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120

Query: 121 VSN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +        ++     + + +D R+    G    L R E  +L+ LM N  K +++++
Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G +D     N +E +I  LRKK   +     + + R +GY +
Sbjct: 181 ILEEVWG-YDFPTSGNALEVYIGYLRKKTEGEGDARLIHTVRGVGYVL 227


>gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185]
 gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185]
          Length = 231

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 101/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +    +      L ++   D++ ++  L        
Sbjct: 8   ILIVEDDTNIRELLATSMKFAGFDVSVAGTGSEGLALAATQEFDLAVLDVMLPD--MDGF 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R    ++P++ ++   S+  T+     G DD + KP    E++AR+ A+ RR K
Sbjct: 66  AVTSRLREGGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRRTK 125

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++       G + +  D  +    G V  +   E ++L YLM N G+ V+K QI   +
Sbjct: 126 ADDSDGPTVTVGDLELDDDSHEVRRAGRVIDVSPTEFKLLRYLMLNAGRVVSKAQILDHV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+K+        + +KR +GY +
Sbjct: 186 WD-YDFRGEAGIVESYISYLRRKIDVDGLEPLIHTKRGVGYVL 227


>gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
 gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
          Length = 230

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++E            +  R D++ ++  +       L
Sbjct: 3   ILVVDDDQAVREALRRSLTFNGYTVELAEDGAEALEKIAKDRPDLAILDVMMP--KLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LARV ++ RR  
Sbjct: 61  DVCRRLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLRRSA 120

Query: 121 VS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +           +   + +  + R+         L R E  +LE LM+N  + +++T I 
Sbjct: 121 LEVPAMEDAATLQFEDLSLDPETREVFRGERRISLTRTEFALLELLMSNPRRVLSRTAIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 181 EDVWG-YDFPTSGNALEVYIGYLRRKTEAEGEPRLIHTVRGVGYVM 225


>gi|206563842|ref|YP_002234605.1| DNA-binding response regulator CreB [Burkholderia cenocepacia
           J2315]
 gi|198039882|emb|CAR55857.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 237

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 94/233 (40%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +   G DG+        +         R D+  ++  L        
Sbjct: 6   ILIVEDEQAIADTIVYALGTDGMQTVHCTLGQAALDRLRGTRVDLVVLDVGLPD--LSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP+I ++        +   + G DD V KP   RE+ ARV  I RR   
Sbjct: 64  EVCRRLRTFTDVPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRFHR 123

Query: 122 SNNRAET-------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +     T                 + +DG      G    L R E  +L  L+ + G+  
Sbjct: 124 TAAPEPTPATAPVDAPAPVASGFTLDTDGARVSWLGHALDLTRYEFGLLALLVRHPGRIY 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++ Q+   ++    ++ +   V++HI  LR KLR      DP+ + R +GYS+
Sbjct: 184 SREQLMDLVWHEALDSAD-RTVDTHIKTLRAKLRAIDPERDPIRTHRGMGYSL 235


>gi|317501849|ref|ZP_07960034.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088638|ref|ZP_08337549.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896739|gb|EFV18825.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407595|gb|EGG87095.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 108/224 (48%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD + ++         +G ++ E  + +E  +         +  ++  +        
Sbjct: 7   LVVDDESRMRKLVKDFLTREGYAVLEAGDGMEAMDIFYEDKEIALVILDVMMP--KMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR  S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  QVCREIRETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTLG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  E G I++       ++  ++  L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 NTAGDVIEAGDIKIDKAAHIVKINDKMIDLSYKEFELLSYFVENQGIALSREKILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR KL ++   + + +   +GY  + N
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGDRG--EYIKTIWGMGYKFEVN 225


>gi|152974106|ref|YP_001373623.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022858|gb|ABS20628.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 93/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +  +++   +++ EE L+       + +   L+      +E
Sbjct: 7   LIADDEKEIRDLLKKYLERELYTVD--TAIDGEEALKLFTHNTYNLVILDLMMPKIDGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R ++ +P++ ++        +     G DD + KP    E++AR+ A+ RR    
Sbjct: 65  VCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLVL 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +        V  +   L  +E  +L++  +N  +   KTQ+F
Sbjct: 125 GSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230


>gi|226948317|ref|YP_002803408.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841453|gb|ACO84119.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|322805369|emb|CBZ02933.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 233

 Score =  234 bits (598), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +G  +      E    L       +  ++  L        
Sbjct: 7   ILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLP--KISGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   IR  S VP+I ++     +  L+    G DD + KP   RE++ARV A+ RR   
Sbjct: 65  EVCSKIREFSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G + V          G+V  L   E ++L  L+ N G+   + Q+  
Sbjct: 125 GKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +G +D       V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|167035223|ref|YP_001670454.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861711|gb|ABZ00119.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 241

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  +E     E   +       D++ ++  L   G   L
Sbjct: 19  LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIVDLGLP--GISGL 76

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL   +R+  +  P++ ++   + Q  ++   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 77  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 136

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +      L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 137 GFTQSTIAAGPLVLDLNRKQATLDELPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL    GF P+D+ R LGY
Sbjct: 196 PGDEERDPNVIEVLVGRLRRKLEGAHGFKPIDTVRGLGY 234


>gi|116625339|ref|YP_827495.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228501|gb|ABJ87210.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 237

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +          +G SL G ++ +    L    R D+  ++  L       L
Sbjct: 9   ILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDS--DGL 66

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + IR       +P+I ++   S    +   + G +D V KP   RE++AR+   +R 
Sbjct: 67  DICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFRN 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E G + +        + G    L   E R+LE+LM   G   ++ Q+ +A++
Sbjct: 127 QATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLLNAVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D A+ +  V+ ++ +LR+K+  +      + S R  GY+ +
Sbjct: 187 GQ-DRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFE 229


>gi|331090913|ref|ZP_08339756.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405467|gb|EGG85000.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 231

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG  +  + + +       + R D++ ++  L        
Sbjct: 5   ILIVDDEKEIADLLEVYLQNDGFEVHKYYTGKEAMDCIRTTRLDLAILDIMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E+LARV    RR   
Sbjct: 63  TICQKIREKYFYPVIMLTAKVEDADKILGLTLGADDYILKPFNPLEVLARVKTQLRRYTK 122

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N            +   + +     +  + GE   L   E  IL YL  NRGK V+  +
Sbjct: 123 YNQVETVVEEKEEHDIKGLVINKTTHECTLFGEKIELTPIEFSILWYLCENRGKVVSSEE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +F  ++G        N V +HI +LR+KL         V +   +GY ++
Sbjct: 183 LFEQVWGEKYYDSN-NTVMAHIGRLREKLHEPPRKPKFVKTVWGVGYKVE 231


>gi|229102995|ref|ZP_04233684.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228680410|gb|EEL34598.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 237

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 90/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +   +    +      L  + R D+  ++  +  K     
Sbjct: 5   ILIVEDEENIREVCKRYLEREEYEVYTAVNGREGWDLFLTHRPDLIILDLMMPKK--DGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD + KP   RE++ RV  I RR   
Sbjct: 63  ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E   ++++   R   V  +   L  +E  +L  +  +  +  +++Q+
Sbjct: 123 VPIQAEESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
              I+  F      N V   +S+LR+KL      +  + +   +GY  + N
Sbjct: 183 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPN 232


>gi|289422565|ref|ZP_06424408.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
 gi|289157137|gb|EFD05759.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
          Length = 226

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   I+D   ++D  I      G+   GF + +           D+   +  L    E  
Sbjct: 1   MVFYIEDDDNIRDLVIYTLESTGMEARGFENPKKFWATLEYELPDLVLCDIMLPE--EDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L + + +RA S    +P+I ++   S    +   DSG DD V KP    E+++R+ A+ R
Sbjct: 59  LSILKKLRASSKTRNIPIIMLTAKGSEYDKVIGLDSGADDYVTKPFGMMELISRIKAVMR 118

Query: 118 RLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R  +  ++     G + +  +  +  V  +   L  +E  +L  LM N    + + +I  
Sbjct: 119 RSSIETDKKCLVIGDVMLDPERHEVRVDQDQVSLTLKEFDLLYLLMKNPNIVMTRDKILE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D   E   V+ HI  LR+KL   L  D +++ R +GY +
Sbjct: 179 TVWG-YDFGGETRTVDVHIRTLRQKLG--LSGDIIETIRGVGYRV 220


>gi|229189657|ref|ZP_04316672.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
           10876]
 gi|228593921|gb|EEK51725.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
           10876]
          Length = 238

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++  +   G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMP--GKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235


>gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium ulcerans Agy99]
 gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans
           Agy99]
          Length = 232

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 103/226 (45%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++E  +       + +S R D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPR--LDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + ++ A          + +    R+         L R E  +LE L+AN  + + +++I 
Sbjct: 123 LEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G FD     N +E ++  LR+K   +     + + R +GY +
Sbjct: 183 EEVWG-FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 227


>gi|303232881|ref|ZP_07319565.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481071|gb|EFL44147.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
          Length = 236

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 92/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++  +    +    ++ F+          +    +  ++  L        
Sbjct: 4   IYVVEDDVSIQEIELIALKNSNYDVQAFSCAADFFAALKTRTPQLILLDIMLPDA--DGN 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +R     S +P+I ++   +    +   D+G DD + KP    E+L+R+ A+ RR
Sbjct: 62  AITRTLRSNAQWSHIPIIMLTAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRR 121

Query: 119 LKVSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +               G I +        V  E   L  +E  +L YLM + G    + 
Sbjct: 122 AQTPAQMPADKYSMCRVGAIMLDPARHFVCVHDEPVNLTHKEYDLLHYLMLHEGLVFTRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +  A++G FD   E   V+ HI  LR+KL +      V + R +GY +  N
Sbjct: 182 MLMQAVWG-FDYEGESRTVDMHIKTLRQKLGDAAC--YVQTVRGVGYCVKSN 230


>gi|71066478|ref|YP_265205.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039463|gb|AAZ19771.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 234

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 102/225 (45%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D A +++  +      G  SL+  +  E  + +    R  +  ++  L G  +  
Sbjct: 6   ILIVEDEAAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDH-RPALILLDWMLPG-DKSG 63

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           ++  R+++     S++P+I ++      + +   D+G DD + KP   RE+++R+ A+ R
Sbjct: 64  IDFCRMLKNDALLSEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLR 123

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R      +     G + + +  +   V   +  +   E R+L + M++  +   + Q+  
Sbjct: 124 RSSALSGDKPINIGKLTLDAKSQRFMVGDNIIDMGPTEYRLLAFFMSHPERAYTRAQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  +  +E+  ++ H+ +LR  LR       + + R  GY  
Sbjct: 184 QVWGG-NVYIEDRTIDVHVKRLRTLLRPYDCDTLIQTVRGTGYRF 227


>gi|229062544|ref|ZP_04199856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228716751|gb|EEL68444.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 232

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAMHIIQTQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  S +  E G + +  + R   V  E   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKVAESKSALEIGGVVIDPERRTVNVYDEKIELTPKEFDILYLLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWAEGYYESG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|170759641|ref|YP_001785959.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406630|gb|ACA55041.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++  F +   EE L+   RE+V+ +   ++      L
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNV--FKASCGEEALEILEREEVNLMVLDIMMPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ +  R    +P++ +S        ++   +G DD V KP +H E+  R+ A+ RR   
Sbjct: 63  EVCKRARQKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYF 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++S+N      + +        +      L  RE  IL  L  NRG   +  +IF
Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++         N V  H+S+LR K+   + G   + +   +GY I+
Sbjct: 183 EKVWKER-YFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIE 229


>gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 248

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 83  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 AFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|304394459|ref|ZP_07376380.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
           sp. R2A130]
 gi|303293369|gb|EFL87748.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
           sp. R2A130]
          Length = 233

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++  +      G  +    + + E+ + ++  E+ + I    +  G   +
Sbjct: 9   ILVVEDEPSQQELLVYNLEKAGFRV--VATGDGEDGVAAAQDENPALIVLDWMLPGLSGI 66

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R  +     P+I ++        +   D+G DD + KP    E+LARV A  RR
Sbjct: 67  EVCRQLRRDADTRQIPIIMLTARGEEGDKVRALDTGADDYIVKPYSVAELLARVRAHIRR 126

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      E G I++       E  G    L   E R+L   ++  G+   +  +   
Sbjct: 127 ANPAEVGEMLEHGDIKLDPSRMKVERSGTGIKLGPTEFRLLTVFLSRPGRVWTRESLLER 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++   D  +++  V+ H+ +LR+ L+     DP+ + R  GYS+D+
Sbjct: 187 VW-EHDLDIDQRTVDVHVGRLRRALKVNGLADPIRTIRSAGYSLDF 231


>gi|228985640|ref|ZP_04145793.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774035|gb|EEM22448.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 231

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEKV 60
           ++++D   + D       ++  ++  F     +E L+   +   D++ ++  L       
Sbjct: 6   LIVEDEREIADLVELYLKNENYTV--FKYYTAKEALECIDKNVLDLAILDIMLPDV--SG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K
Sbjct: 62  LNICQKIRDKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYK 121

Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N       N      + +     +  +  +   L   E  IL  L  N+G  V+  Q+
Sbjct: 122 KYNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           F  I+G    +   N +  HI  LR+K+ + +     + +   +GY I+
Sbjct: 182 FHEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIE 230


>gi|66046938|ref|YP_236779.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257645|gb|AAY38741.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330897073|gb|EGH28553.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330941394|gb|EGH44220.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 225

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 110/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +RA  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFN 221


>gi|326789158|ref|YP_004306979.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326539922|gb|ADZ81781.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 237

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +   +       +      D+  ++  L       +
Sbjct: 13  ILIIEDEVKIARFLQLELQHEGYDVNMSHDGREGLNMALENNYDLLILDVMLPS--LNGM 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR  S +P+I ++    +   +   D G  D + KP    E+LAR+  +++    
Sbjct: 71  EVLRRIRQVSSLPVIMLTAKDDVMDKVMGLDLGAQDYITKPFAIEELLARIRVLFKLKAT 130

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    + G + +  +  +         L ++E  +L++LM N+   + + QI   +
Sbjct: 131 TPTATPEVLKCGQLTLDPERYEVSYNNIPLALTKKEFELLQFLMLNKNLLITREQILEKV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + NVV+ +I  LR K+  +     + + R +GY I
Sbjct: 191 WG-YDYLGDTNVVDVYIRYLRNKIDQRFEDKLIYTVRGMGYQI 232


>gi|238752450|ref|ZP_04613926.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC
           43380]
 gi|238709299|gb|EEQ01541.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC
           43380]
          Length = 241

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +              A   +  ++  L   G   + 
Sbjct: 17  LIVEDEPKLGQLLVDYLQAAGYRTQWLTKGTEVIDAVRQAPPSIILLDLMLP--GLDGIS 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 75  ICREIRRFSNVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 134

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +A +T  + +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 135 PEQAGDTATLIIDESRFQASYQGHMLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 194

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              V +  ++SHI  LR+KL    G  P + +   +GY  +
Sbjct: 195 -RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 234


>gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 242

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +   +S +      + +  D+  ++  L         
Sbjct: 21  LVVDDEEAITDLVTMALRYEGFDVRAAHSGQAALTQAALSPPDLLVLDVMLPD--IDGFA 78

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R+   VP + ++   + +  +     G DD V KP    E++ARV AI RR   
Sbjct: 79  VCERLRRSGQGVPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRRAGA 138

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++          + +  + R+    G    L   E R+L YL+AN  K + + Q+   ++
Sbjct: 139 ADGAPTPLRFADLELDPETREVRRAGRHVDLTATEYRLLHYLLANARKVLTRAQLLDHVW 198

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D   +  V+E+++S LR+K+ +      + + R +GY +
Sbjct: 199 G-HDFGGDARVLETYVSYLRRKIDDVP-PPLIHTVRGVGYVL 238


>gi|331001813|ref|ZP_08325335.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412787|gb|EGG92170.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 92/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG  +  F +   E+ L+    ED+      ++  G   L
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGFKV--FKANSAEDGLKLIENEDIHLAILDIMMPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCKKIRETHNFPIILLSAKSADLDKILGLGTGADDYVTKPFNTLELTARVKSQLRRYTQ 123

Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N           N      + +  D     ++G    L   E  IL  L +N G+  + 
Sbjct: 124 LNPNSSVIDKDDPNEIRLKGMSINKDNHKVIIEGNEVKLTPIEFDILYLLASNAGRVFST 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            +IF  ++         N V  HI +LR K+  ++     + +   +GY I+
Sbjct: 184 DEIFEKVWNEKVYEAN-NTVMVHIRRLRGKMNEDERENKIITTVWGVGYKIE 234


>gi|313902686|ref|ZP_07836084.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466983|gb|EFR62499.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 258

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 101/232 (43%), Gaps = 15/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           +++DD A ++          G  +    +G ++L   +      R  V+A+   L+  G 
Sbjct: 28  LVVDDEAEIRRLLRLYLERAGFVVMEAGDGPSALAAFDAAGRQGRP-VAAVVLDLMLPGM 86

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR- 117
              E+   +R  S VP++ ++    +   L  F  G DD V KP   REI+ARV A+ R 
Sbjct: 87  DGWEVCERLRERSPVPILMLTARGEIHERLHGFHLGADDYVVKPFDPREIVARVRALLRR 146

Query: 118 --------RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                   R   +    E G + +    R   V G+  PL R E  +L  L  +RG+ + 
Sbjct: 147 GMPAAGATRPPGAEPALELGRLVIDPGARTVTVDGQPVPLTRTEFDLLYILARHRGQTLG 206

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + QI   + G  D   +E VV+SH+  LR+KL        + +   +GY  D
Sbjct: 207 RQQILDRLRGG-DYFGDERVVDSHVRNLREKLEPFGLRHLIATVWGVGYRFD 257


>gi|154496626|ref|ZP_02035322.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
 gi|150274259|gb|EDN01350.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D A ++         DG  +           L      D++ ++  +   G   
Sbjct: 4   LILIAEDDADIRALLRLYLEGDGFRVLEAEDGTTALVLAREHAPDMAILDIMMP--GMNG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            EL R +R +S++P++ +S        +   + G DD + KP +  EI+ARV A  RR  
Sbjct: 62  FELTRALRKYSEIPILILSAKSQDNDKILGLNLGADDYIAKPFNPVEIVARVKAQLRRAA 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S++      + + +        G   PL   E +IL  LM + G+   K Q++    G
Sbjct: 122 RNSSDVITVRELSLDTAAFQLTKSGVPIPLTPMEYKILALLMRSPGRIFTKIQLYEGAIG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            +    ++N +  HISKLR+K+ +       + + R LGY ++
Sbjct: 182 NY-FEGDDNTMMVHISKLREKIEDDPRNPRYIITVRGLGYKLE 223


>gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 237

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   +++ E  LQ   + + S +   L+      +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVD--TAIDGEVALQLFNQNNYSLVILDLMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFLV 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGYKF 230


>gi|325265898|ref|ZP_08132584.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
           denitrificans ATCC 33394]
 gi|324982536|gb|EGC18162.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
           denitrificans ATCC 33394]
          Length = 229

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 2/220 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++++D   ++        + G  +    +++    +  +   D+  ++  L    G   
Sbjct: 6   ILVVEDELPIQTLIAFNLQEAGFDVCCAQNVQAASDILRARLPDLMVLDWMLPDCDGVSW 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   A + +P+I ++           F  G DD + KP   RE++AR+ A  RR  
Sbjct: 66  IAELRRQTATAALPIILLTARSEDADKELGFAQGADDYLTKPFSPRELVARIHARLRRAP 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N     G +++  + +     G        E ++L +LM +  +  ++ Q+   ++G 
Sbjct: 126 SGNAWRSAGRLQLNPETQRVTADGANIECSSSEFKLLHFLMTHPERVFSRRQLLDHVWGE 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  VEE  V++ I +LR+ L +    D + + R  GY  
Sbjct: 186 -DACVEERTVDTQIGRLRRLLESAGLSDYIQTVRGSGYRF 224


>gi|227498888|ref|ZP_03929028.1| DNA-binding response regulator [Acidaminococcus sp. D21]
 gi|226904340|gb|EEH90258.1| DNA-binding response regulator [Acidaminococcus sp. D21]
          Length = 224

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S++   +        + A  D+  ++  +       L
Sbjct: 3   ILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEYDLLIVDILMPE--MDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R  +  VP++ ++     +  +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 61  TLVHTLREKNVTVPVLFLTALDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALLRRSG 120

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +    N  +   + +          G+   L  +E  +LEYL+ N+G  +++ +I    
Sbjct: 121 GTAVPKNELQLSDLVLSESAHTVTRGGKPIALTPKEFSVLEYLLRNQGIVLSRDKILEHA 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  F      N+V+ +I  LRKK+ +      + + R  GY +
Sbjct: 181 WD-FSYEGASNMVDVYIKTLRKKIDHDFEPKLLHTVRGAGYVL 222


>gi|182413545|ref|YP_001818611.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840759|gb|ACB75011.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 228

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 8/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +    +     +G +++     +    L +S   D + ++  L       L 
Sbjct: 9   LVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPE--LDGLS 66

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +RA  S +P++ +S   S++  +    +G DD + KP    E+ AR+ A+ RR   
Sbjct: 67  LVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRASR 126

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S    R   G + +    R   V G+   L  RE  +LEYL+ + G+ V K  I   ++ 
Sbjct: 127 SPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVWD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NVV+  +S+LR K+        +++ R +GY  
Sbjct: 187 -YSFDPQTNVVDVLMSRLRSKIDPD--KTRIETLRGVGYVF 224


>gi|152976930|ref|YP_001376447.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025682|gb|ABS23452.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 230

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLIEDDISIQEMVEKYLSKEGFQVTFASDGEEGVAKFFHGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ AR  A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDIDKAVGLGLGADDYICKPFSMIELAARAKASIRRFTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +      E G +++         + +   L  +E  IL+    N+ +   K QI++
Sbjct: 123 YSATEQKEEMIEIGDLKIDPINFTVYKKEKQLKLTLKEFEILKLFARNQNRVFTKAQIYN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIETDPSNPEYIKTLWGIGYKLEV 229


>gi|229916056|ref|YP_002884702.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467485|gb|ACQ69257.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 221

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 107/223 (47%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +       F D G  +         E L ++   D + ++  L   G    
Sbjct: 3   ILIVEDDPSILRLVKETFEDAGHEVLTATDGNTGEELFTTQPIDAAIVDIMLP--GLDGR 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R ++A   +P+I ++     +     F+ G DD V KP    E+L R+ A+ RR + 
Sbjct: 61  ELCRRLKATLDIPVILLTALDEWEDKRQGFELGADDYVTKPFIPEELLFRLQAVSRRYQR 120

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S  ++ + GP+R+     +  ++G++F LP++E  +L  L +  G+   + ++   ++G 
Sbjct: 121 SAASQIQAGPLRLDLREYEVTLEGQLFYLPKKEFELLFQLASFPGRVYRREELIELVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FD   +E  V+ HI +LR +  +      + + R +GY+++ N
Sbjct: 180 FDFEGDERTVDVHIKRLRNRFDHPALT--IRTVRGVGYALEVN 220


>gi|258404600|ref|YP_003197342.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
 gi|257796827|gb|ACV67764.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
          Length = 230

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +     F + G  +    +      + SSA  D+  ++  L   G+  LE
Sbjct: 7   LLVEDEVDILNLLRINFENGGFRVLTAENGFQALDVLSSAPVDLVVLDLMLP--GKDGLE 64

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R+      +P+I ++        +   + G DD V KP   RE+L R  A+ RR 
Sbjct: 65  VCRELRSRESTKHLPVIMLTAKGDEVDRIVGLELGADDYVVKPFSPRELLLRAKAVMRRG 124

Query: 120 KVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           K         E+G +RV        V GE   L   E R+L +L+ +RGK   + Q+ + 
Sbjct: 125 KPQPEEETLWESGGLRVDFGTYKVTVDGEDRELTATEFRLLVHLIRSRGKVQTRDQLLNK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++       V++H+ +LR K+        V++ R +GY +
Sbjct: 185 VWG-YEFEGYARTVDTHVRRLRHKIEPYAA--IVETVRGVGYRL 225


>gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 230

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 101/224 (45%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D        +G  ++   +      L  +    +  ++  L   G   L
Sbjct: 6   ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLALARAGEAALVILDVMLP--GMTGL 63

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +RA   QVP++ ++   S++  +     G DD + KP    E+LAR+ A+ RR +
Sbjct: 64  DLCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGR 123

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               R    +   + +  +       G    L  +E   LE LM+  G+  ++ +I S +
Sbjct: 124 EQRPRATTLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+ ++ +  NVV+ ++ +LR K+        + + R LGY +D
Sbjct: 184 WGMHEDPL-TNVVDVYVRRLRSKIDEGHPLALLKTVRGLGYRLD 226


>gi|297194039|ref|ZP_06911437.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152078|gb|EFH31517.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 229

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLP--GRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|282882277|ref|ZP_06290909.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
           315-B]
 gi|281297871|gb|EFA90335.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
           315-B]
          Length = 233

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D     F  +G  ++                  +  ++  +        
Sbjct: 5   ILVVDDEQAIADIIKFNFEREGYGVDIAKDGLEALNFVKDNTYSLILLDIMMP--KLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + IR   + P+I ++        +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 63  DTLKEIRKSHKTPVIMLTAREDEVDKVLGLELGADDYVVKPFSIRELIARVKAVLRRFGP 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +  +  + +  G++  L  RE  +L++L +N G   ++ ++ 
Sbjct: 123 PTEEEGSEDEIITVGELEIDINKYEVKKNGKIIDLTLREFELLKFLSSNPGVVFSREELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             ++  ++   +   V+  I +LR+K+ +    +  + +KR +GY  D
Sbjct: 183 EKVW-EYEYYGDIRTVDVTIRRLREKVEDTSKDYKYILTKRGVGYYFD 229


>gi|49478884|ref|YP_039110.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330440|gb|AAT61086.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 234

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 99/231 (42%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    +   EE L+   + +V  I   ++      +
Sbjct: 6   IMVVDDEKEIRELIAIYLKNEGYRV--LQAENGEEGLELLKKNEVHLIVLDIMMPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + N  E G +++        +  +   L  RE  ILE L  N+G  ++  QI
Sbjct: 124 MNGGISAQNENEVEIGDMKINVTTHKVTIADQEVKLTPREFAILELLARNQGMVMSAEQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +  ++   +    +N V  HI K+R+K+         V +   +GY I+ +
Sbjct: 184 YERVW-KEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233


>gi|242243834|ref|ZP_04798278.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           W23144]
 gi|242232732|gb|EES35044.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           W23144]
 gi|319401656|gb|EFV89865.1| response regulator [Staphylococcus epidermidis FRI909]
          Length = 224

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 6/226 (2%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +++DD   +     +    + +    F S E       +   D++ ++  +   G 
Sbjct: 1   MINCLIVDDDEKLLQYVSSHLERESIQTHTFTSGEASLDFLENKNVDIAIVDIMM--SGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              EL + ++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR
Sbjct: 59  DGFELCQTLKDDYHIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRR 118

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ ++N  + G + +     +  V  +   LP +E ++L  L +N      +  I   I
Sbjct: 119 YQINADNELQLGNLILNQSYMEITVGSKTMNLPNKEFQLLFLLASNPKHIFTRDDIIEKI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   ++  V+ HI +LR++L        + + R  GY +D N
Sbjct: 179 WG-FDYEGDDRTVDVHIKRLRQRLSKLKSSVSIQTVRGQGYRVDQN 223


>gi|212637427|ref|YP_002313952.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212558911|gb|ACJ31365.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 245

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +    +        ++    +L+    + ++ + D+  ++  L       +
Sbjct: 16  ILLIEDEQDLAKLVMLNLKSMNHAVIHCVTLQQASQVIATKQIDLILMDRMLPD--GDGI 73

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + IR     +P + ++   S    +   +SG DD + KP    E+ ARV A+ RR  
Sbjct: 74  TLCQQIRQDGNELPCMLLTAKDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRGT 133

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   +   E   I +  + R+     E   L  RE  +L YL  +  +  ++ Q+  A+
Sbjct: 134 QIAHQDESLEFNGISINCNTREVIAFNETLELTAREFDLLLYLAQHPKQVFSRMQLLEAV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +G +  +  E+ V SHI++LR KL RN    D V +   +GY  
Sbjct: 194 WG-YSYSGYEHTVNSHINRLRNKLARNACTTDLVKTVWGVGYKF 236


>gi|167766603|ref|ZP_02438656.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1]
 gi|167711726|gb|EDS22305.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1]
          Length = 238

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D       ++   +  F           S   D++ ++  L        
Sbjct: 12  ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPD--MNGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L ++IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 70  SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 129

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +         +      + +     +  + GE   L   E  IL  L+++ G  V+  +
Sbjct: 130 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +F A++     +   + +  HI  LR+KL +       + +   +GY I
Sbjct: 190 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 238


>gi|66731635|gb|AAY52002.1| VanR [Paenibacillus thiaminolyticus]
          Length = 231

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  F     +E L+   + D+      ++  G   L
Sbjct: 5   ILVVDDEHEIADLVELYLKNENYTV--FKYYTAKEALECIDKTDLDLAILDIMLPGASGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++   +    +     G DD + K     E++ARV A  RR K 
Sbjct: 63  AICQKIRDKHTYPIIMLTAKDTEVDKITGLTIGADDYITKSFRPLELIARVKAQLRRYKK 122

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  AE          + +  +  +  +  +   L   E  IL  L  N+G  V+  Q+F
Sbjct: 123 YSGVAEQNENVIVHSGLVININTHECFLNEKQLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+G    +   N +  HI  LR+K+ + +     + +   +GY I+
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIE 230


>gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 224

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +         D G  ++     E   +L  S   D   ++  L    G  V
Sbjct: 3   LLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R  R    +P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 63  LEAWR--RNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V+++++   +Y 
Sbjct: 121 GHAQSELTCGPVTLDTRTGKVSVSGNPVKMTSHEYRLLSYLMHHSGRVVSRSELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLD----CDVIQTVRGLGYLL 216


>gi|114330073|ref|YP_746295.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
 gi|114307087|gb|ABI58330.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
          Length = 231

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       + G  ++         +       D+  ++  L   G    +
Sbjct: 4   LVVEDEKKLADYLRRALTEHGYVVDVAGDGREGLYFAQETPYDLILLDVMLP--GMDGFQ 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L R +R  S+VP+I +S    ++  +   + G DD + KP    E++AR+ A+ RR    
Sbjct: 62  LLRELRKKSRVPVIMLSARDRVEDRVRGLEDGADDYLPKPFSLTELMARIFALARRNDPA 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   N      + +    R      +   L  +E  +L+  M   G+ +++  +   
Sbjct: 122 NLAEAHTNIVRVADLELDLQRRRVYRNEQPISLTLKEFALLQLFMRKCGQVLSRQTLAEQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +     NVVE+ + +LR K+        + + R +GY I+
Sbjct: 182 VWDI-NFNNNTNVVEAAVRRLRAKVDGPFESKLIHTVRGMGYVIE 225


>gi|330897348|gb|EGH28767.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 227

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIMLP--GRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 68  DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRSSS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S      G ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 128 SETHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 10  ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIGALQLLEEKEFDLIILDIMMPN--MDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD + KP +  E++ARV +  RR K 
Sbjct: 68  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 127

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   ++G+   L  +E  ILE L +N+G  ++  +I+
Sbjct: 128 YNTSINHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFDILELLASNKGIVLSVAKIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|30261572|ref|NP_843949.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
 gi|47526771|ref|YP_018120.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47569149|ref|ZP_00239837.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
 gi|49184403|ref|YP_027655.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Sterne]
 gi|49477248|ref|YP_035693.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52143871|ref|YP_082957.1| response regulator [Bacillus cereus E33L]
 gi|165872643|ref|ZP_02217273.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
 gi|167634461|ref|ZP_02392782.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
 gi|167641616|ref|ZP_02399862.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
 gi|170706385|ref|ZP_02896846.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
 gi|177651599|ref|ZP_02934388.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
 gi|190568062|ref|ZP_03020972.1| DNA-binding response regulator ResD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196038975|ref|ZP_03106282.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
 gi|206978271|ref|ZP_03239149.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
 gi|222095206|ref|YP_002529266.1| response regulator [Bacillus cereus Q1]
 gi|225863439|ref|YP_002748817.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
 gi|227815677|ref|YP_002815686.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
           684]
 gi|228914150|ref|ZP_04077768.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228926607|ref|ZP_04089676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228932862|ref|ZP_04095729.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945176|ref|ZP_04107532.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228984655|ref|ZP_04144828.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229029255|ref|ZP_04185346.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
 gi|229090537|ref|ZP_04221773.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
 gi|229121118|ref|ZP_04250355.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
 gi|229172214|ref|ZP_04299778.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
 gi|229183771|ref|ZP_04310988.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
 gi|229195776|ref|ZP_04322536.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
 gi|301053115|ref|YP_003791326.1| response regulator [Bacillus anthracis CI]
 gi|30255426|gb|AAP25435.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
 gi|47501919|gb|AAT30595.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554220|gb|EAL12583.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
 gi|49178330|gb|AAT53706.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Sterne]
 gi|49328804|gb|AAT59450.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51977340|gb|AAU18890.1| response regulator [Bacillus cereus E33L]
 gi|164711587|gb|EDR17134.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
 gi|167510409|gb|EDR85809.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
 gi|167530349|gb|EDR93075.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
 gi|170128919|gb|EDS97785.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
 gi|172082877|gb|EDT67940.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
 gi|190560796|gb|EDV14771.1| DNA-binding response regulator ResD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196030120|gb|EDX68720.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
 gi|206743520|gb|EDZ54949.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
 gi|221239264|gb|ACM11974.1| response regulator [Bacillus cereus Q1]
 gi|225787803|gb|ACO28020.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
 gi|227004496|gb|ACP14239.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
           684]
 gi|228587673|gb|EEK45731.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
 gi|228599620|gb|EEK57223.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
 gi|228611202|gb|EEK68460.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
 gi|228662237|gb|EEL17840.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
 gi|228692804|gb|EEL46527.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
 gi|228732068|gb|EEL82959.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
 gi|228775049|gb|EEM23442.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228814411|gb|EEM60676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826783|gb|EEM72550.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832983|gb|EEM78551.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845483|gb|EEM90516.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300375284|gb|ADK04188.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 238

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++  +   G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMP--GKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235


>gi|188533449|ref|YP_001907246.1| DNA-binding transcriptional regulator BaeR [Erwinia tasmaniensis
           Et1/99]
 gi|188028491|emb|CAO96353.1| Two-component system response regulator [Erwinia tasmaniensis
           Et1/99]
          Length = 235

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALF-GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + ++++D   +    I      +  +       E  +W++  A  D+  ++  L   G  
Sbjct: 9   LILIVEDEPKLGQLMIDYLQAANYHTHHLLRGDEVVDWVKLHA-PDLVLLDLMLP--GMD 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L + R +R+ S++P++ ++        L   + G DD + KP   RE++ARV AI +R 
Sbjct: 66  GLSVCRELRSFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKAILKRC 125

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  S       P++V           +   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 126 QRGSQKTLPVSPLQVDEQRFQASWDDKPLDLTPAEFRLLKTLSQQPGKVFSREQLLNHLY 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             +   V +  ++SHI  LR+KL       P + +   +GY  +
Sbjct: 186 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQPFIRAVYGIGYRWE 228


>gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
 gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
          Length = 237

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L +    ++  ++  +       +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDFMMP--KIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|66046101|ref|YP_235942.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63256808|gb|AAY37904.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 227

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIMLP--GRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 68  DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRSSS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S      G ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 128 SEPHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|317494844|ref|ZP_07953255.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917169|gb|EFV38517.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 238

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + + D       D+G  +E          +      D   ++  L   G   L
Sbjct: 7   ILIVEDDSHIADLLALHLRDEGYQIEHAADGIAGMSMLEQGGWDALILDLMLP--GIDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R  R+ ++  P+I IS   S    +   + G DD V KP    E+ ARV A++RR  
Sbjct: 65  DICRRARSMTRYTPIIMISARSSEVHRVLGLELGADDYVAKPFSMVELAARVKALFRRQE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L++   R +   + +    R   +  +   L  RE  +L +   N  K  ++ Q+
Sbjct: 125 AMSRNLQMDAGRLDMAGLTIDPIARAVWMNQQPIDLTPREFDLLYFFAKNPDKVFSRLQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDQVWG-YQHDGYEHTVNTHINRLRIKIEADPSEPQYILTVWGSGYKF 231


>gi|317125788|ref|YP_004099900.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589876|gb|ADU49173.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 226

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 3/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D      G+ G + +  +              D+  ++  L G     +
Sbjct: 3   ILVVEDDARLADVVRRALGEAGYAADVAHDGPAALEAFEVETYDLVVLDLMLPGIAGGGM 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R++R HS  VP++ ++   SL+  ++  D+G DD + KP H  E+LARV A+ RR  
Sbjct: 63  EVCRVMRRHSSDVPILMLTALDSLRRKVEGLDAGADDYLVKPFHLSELLARVRALMRRAP 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E   + +    R     G   PL  +E  +LEYLM N G  V+ +Q+    + 
Sbjct: 123 RADAPVLEAAGVLLDPATRTAHRAGRSIPLTAKEYAVLEYLMRNAGHVVSSSQLIDHAWD 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + V  NVV+++I  LR KL      + ++++R  GY I
Sbjct: 183 TNYQGV-SNVVQTYIRYLRVKLAEPGLPEVIETRRGYGYLI 222


>gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
 gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
          Length = 233

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++         DG   +E  +  E  +         +  ++  L       
Sbjct: 13  IMVVDDEMRIRKIVRDFLVRDGYDVVEAQDGEEALDLFYQDHEIGLIILDVMLP--KLSG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R IR  S+VP++ ++     Q  L  FD GVD+ ++KP   + ++ARV AI RR  
Sbjct: 71  FDVAREIRETSKVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILRRSG 130

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V       E G IR+        V G    L  +E  +L Y M NRG  +++ +I ++++
Sbjct: 131 VEEQAKLLEAGGIRLDFVAHTVTVDGREIMLSAKEFELLAYFMENRGIALSREKILNSVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +D   +   +++H+ KLR K+  K     + +   +GY  + +
Sbjct: 191 D-YDYFGDARTIDTHVKKLRAKIGEKGS--YIRTIWGMGYKFEVS 232


>gi|225388781|ref|ZP_03758505.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
           DSM 15981]
 gi|225045163|gb|EEG55409.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
           DSM 15981]
          Length = 225

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 110/227 (48%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD A ++         D ++ +GF  +E  +  ++     A +D++ +   ++   
Sbjct: 6   ILVVDDEARMRK-----LVKDFLTNKGFQVIEAGDGEEAVDIFFADKDIALVLLDVMMPK 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+ + IR +SQVP+I ++     +  L  F  GVD+ ++KP   + ++ARV AI R
Sbjct: 61  MDGWEVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILR 120

Query: 118 RLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   VS +    G I +        + G    L  +E  +L Y + N+G  +++ +I + 
Sbjct: 121 RSNMVSTDTLNVGGICIDKAAHQVTIDGSEIELSYKEFELLTYFVENQGLALSREKILNN 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++  +D   +   +++H+ KLR K+  K   + + +   +GY  + +
Sbjct: 181 VWN-YDYFGDARTIDTHVKKLRSKMGEKG--EYIKTIWGMGYKFEVS 224


>gi|331701207|ref|YP_004398166.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128550|gb|AEB73103.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 242

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 105/236 (44%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +G  +   ++ +E  + + +     D+  ++  L  K   
Sbjct: 3   LLMIEDNKSVSEMMQMFFQKEGWDVTIAYDGIEAMDKFNEDPDSWDMITLDLNLPKK--D 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +E+ + IRA SQ VP+I ++   S    +  F+ G DD V KP     ++AR+ A+ RR
Sbjct: 61  GMEVAKEIRAKSQTVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRR 120

Query: 119 LKVSNNR------------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRG 165
                               +T   ++ S  R+  +  +    L  +E  +L+ L     
Sbjct: 121 AHTETEEESEDEKAKNVFDVQTDHFKLNSSTREVYLDDKRISDLTPKEFELLKTLAQKPR 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++  ++   +E  V++H+ KLR+K+  K+G   + +   +GY  D
Sbjct: 181 QVFSREQLLETVWN-YEYYGDERTVDAHVKKLRQKIE-KVGTQVIQTVWGVGYKFD 234


>gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 239

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 13  ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 71  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 130

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  S +  E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 131 LNQPKVAESKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 191 FQHVW-ADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 238


>gi|226322402|ref|ZP_03797920.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758]
 gi|225209202|gb|EEG91556.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   L+ +   E  E ++ +   D++ ++  L        
Sbjct: 3   ILVVDDEKEIADVVELYLQNEYHVLKFYTGQEALECIEKT-NVDLAILDVMLPD--IDGF 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++     +  +     G DD + KP +  E++ARV A  RR   
Sbjct: 60  TILRKIREKYTFPVIMLTAKTEYRDKITGLTMGADDYIPKPFNPLELVARVKAQMRRYTQ 119

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S N  +   + +  +  +     +  PL   E  IL  L  NRGK ++  ++
Sbjct: 120 YNDGKKSDSENIIDFAGLLLNKESHECIYNEQSLPLTPTEFEILWILCENRGKVISSQRL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           F  ++         N V  HI  LR+KL    G  D + +   +GY I+
Sbjct: 180 FEEVWHEEYLKNSNNTVMVHIRHLREKLSKPTGKSDLIKTVWGVGYKIE 228


>gi|309778700|ref|ZP_07673474.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA]
 gi|308922550|gb|EFP68173.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA]
          Length = 225

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A   +  +    + G  ++   +      L S  R D+  ++  L   G    
Sbjct: 3   ILVIEDEARTAEYLLKGLTESGFVVDIAANGMDGAHLASEVRYDLILLDVMLP--GADGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + ++IR  S VP++ ++    +   +  F+ G DD + KP    E+LAR+    R+   
Sbjct: 61  SVIKMIRQKSDVPVLFLTARDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSSG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +   GR     G    L  +E  +L  L    G+ +++T I S ++ +
Sbjct: 121 RESEHLSVGDLDIDVLGRKVVRAGVKVELTSQEFVLLHLLARRSGEVLSRTSIASHVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR KL        + + R +GY +D
Sbjct: 181 -NFDTDTNVVDVAIRRLRAKLDEPFDTKLIHTVRGMGYVLD 220


>gi|229087092|ref|ZP_04219243.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-44]
 gi|228696236|gb|EEL49070.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-44]
          Length = 230

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  + EE + +  +     I   ++      L
Sbjct: 5   ILLVEDDISIQEMVETYLSKEGFQITIAS--DGEEGVLAFLKGSFDLIILDIMMPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +    R   G +++           +   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATEQKEERIAIGDLKIDPINFTVHKNEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+ +       + +   +GY ++ 
Sbjct: 183 LIWSE-EYYGDDNVINVHMRRLREKIEDDPSSPKYIKTLWGIGYKLEV 229


>gi|171915578|ref|ZP_02931048.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 247

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G +++   S      L+   +E+ + +   +        
Sbjct: 7   ILVVEDEPSIADTLQYSLESEGFAVQI--SGTGASALEILGQEEFALVVLDIGLPDMTGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    VP+I ++   S    +   + G DD + KP   RE+ ARV A+ RR + 
Sbjct: 65  EVCRQVRTSKNVPVIFLTARSSEVDRVVGLEIGGDDYLCKPFSPRELTARVRAVLRRTQP 124

Query: 122 SNNRAETGPIR-------------------VFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
               A TGPI+                   V          GEV PL R E R+L+ L  
Sbjct: 125 QAAPAATGPIQAQVTPQPQAGPLGATTPVVVDETRCQIRYFGEVLPLSRYEYRLLQTLAR 184

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           + G+  +++Q+        D A+E   V++H+  LR K++      + + + R +GYS+
Sbjct: 185 HPGRVFSRSQLMEHASDEPDAAME-RTVDAHVKSLRAKMKLIREEVEAIVTHRGMGYSL 242


>gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 239

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD+  + +        +G  +      + E+ L+    +DV      ++  G    
Sbjct: 6   IMVIDDQPEILELISFTLEKEGYDV--IPVEDAEKALEELKDKDVDMFLVDIMLPGIDGF 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R IR    H   P+I +S        +   + G DD + KP   RE+LAR+ A++RR
Sbjct: 64  EFVRHIRSLEQHKLTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRR 123

Query: 119 LKVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +++S    E          + +  D  + +++G+   L   E  +L +L  N GK  ++ 
Sbjct: 124 MQLSTQTKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRN 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 184 VLLDKLWG-YDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKF 232


>gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 224

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +  S++     E      + A  DV  ++  +  K    L
Sbjct: 3   ILIAEDERDLNKILAQRLMAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKK--DGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR  +  VP++ ++   S++  +   D+G +D + KP    E+LAR+  + RR +
Sbjct: 61  SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S +     G + V  D       G+   L  +E  +L Y++ N+G  +++ ++   ++ 
Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D A   NV++ +I  LRKK+        + + R  GY +
Sbjct: 181 -YDYAGGSNVIDVYIRYLRKKIDESFKEKLIHTVRGAGYVL 220


>gi|309804121|ref|ZP_07698202.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 11V1-d]
 gi|309804844|ref|ZP_07698906.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 09V1-c]
 gi|312871212|ref|ZP_07731310.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 3008A-a]
 gi|312872643|ref|ZP_07732708.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2062A-h1]
 gi|312873308|ref|ZP_07733363.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2052A-d]
 gi|312874913|ref|ZP_07734932.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2053A-b]
 gi|325912258|ref|ZP_08174655.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 143-D]
 gi|325913632|ref|ZP_08175994.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 60-B]
 gi|308163889|gb|EFO66155.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 11V1-d]
 gi|308165783|gb|EFO68004.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 09V1-c]
 gi|311089658|gb|EFQ48083.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2053A-b]
 gi|311091188|gb|EFQ49577.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2052A-d]
 gi|311091685|gb|EFQ50064.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2062A-h1]
 gi|311093226|gb|EFQ51572.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 3008A-a]
 gi|325475917|gb|EGC79086.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 143-D]
 gi|325476991|gb|EGC80141.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 60-B]
          Length = 234

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L  K    L
Sbjct: 5   ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    + +I ++   +    +   + G DD V KP  +RE++ARV A  RR ++
Sbjct: 63  EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       N     G + +  +    E  G    L  RE  +L YL  + G+ + +  + 
Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +      +  ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYV 228


>gi|228993268|ref|ZP_04153184.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           pseudomycoides DSM 12442]
 gi|228999318|ref|ZP_04158898.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock3-17]
 gi|229006873|ref|ZP_04164505.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock1-4]
 gi|228754366|gb|EEM03779.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock1-4]
 gi|228760515|gb|EEM09481.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock3-17]
 gi|228766336|gb|EEM14979.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           pseudomycoides DSM 12442]
          Length = 230

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 100/228 (43%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + +++        +G  +   +  + EE + +  +     I   ++      L
Sbjct: 5   ILLVEDDSSIQEMVEKYLTKEGFQITIAS--DGEEGVLTFLKGSFDLIILDIMMPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +      E G +++       + + +   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATEQKEETIEIGDLKIDLINFTVQKKEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+ +     + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIEDDPSNPEYIKTLWGIGYKLEV 229


>gi|170724028|ref|YP_001751716.1| DNA-binding response regulator CreB [Pseudomonas putida W619]
 gi|169762031|gb|ACA75347.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 226

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  I     +G S             Q     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLIYALQAEGHSTAWVTLGTAALEQQRQRPADLVILDIGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R +R  S+VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  DTCRQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                AET   ++ +       + +   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 122 RVEPPAETALFQLDTLRMLISYRSQPLSLTRHEFRLLQCLLTQPQRVFSREQLLDAL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             +   E  ++SHI  LR KLR      +P+ + R LGYS
Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRQVAAHAEPIQTHRGLGYS 220


>gi|157369751|ref|YP_001477740.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157321515|gb|ABV40612.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 237

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  +           +      D   ++  L   G   L
Sbjct: 7   ILIVEDDGNIAELLQLHLRDEGYDISHAADGNLGMAMLEQGGWDALILDLMLP--GIDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  R  ++  P+I  S   S    +   + G DD + KP    E++ARV A++RR  
Sbjct: 65  EICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L++         + +    R+  +  +   L  RE  +L +   + GK  ++  +
Sbjct: 125 AMSRNLRMDAGTLSFDGLTIDPIAREVHLNQQTIDLTPREFDLLYFFAKHPGKVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+  N    + + +   +GY  
Sbjct: 185 LNQVWG-YQHEGYEHTVNTHINRLRIKIETNPAEPERILTVWGMGYKF 231


>gi|229158143|ref|ZP_04286211.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 4342]
 gi|228625305|gb|EEK82064.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 4342]
          Length = 230

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +         + G + +       E  G+   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATEEIGKVIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            I+   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41]
 gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +++       ++G  +E     +  + L+     DV  I   ++      +
Sbjct: 5   ILVIDDDNDIRNLISVYLENEG--METIKVADAIKGLEFLKSNDVDLIILDIMMPKMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR   
Sbjct: 63  QACLKIREEKSMPIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRSSK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N          E G + + +D R   VQ +   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNVNMKNNKKIIEIGNLVINTDTRQVIVQEKEIRLTPKEFDILELLAYNKGIVLSIQKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++   D    +N V  HI+ +R+K+         + +   +GY I
Sbjct: 183 EAVW-KEDYFKSDNTVMVHITNIREKIEQDPKHPIYIKTVWGVGYKI 228


>gi|219872086|ref|YP_002476461.1| two component transcriptional regulator/response regulator
           consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Haemophilus parasuis
           SH0165]
 gi|219692290|gb|ACL33513.1| two component transcriptional regulator/response regulator
           consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Haemophilus parasuis
           SH0165]
          Length = 223

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G S++ F   +      SSA  D   ++  L       L
Sbjct: 3   ILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTLP--KMDGL 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           E+ +   RA+  VP++ ++   +L   +     G DD + KP    E++AR+ A+  RR 
Sbjct: 61  EVLQSWRRANQDVPVLILTARDTLDERIMGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   E   ++   + R   ++ +   L  RE  +LE  M N+ + + ++ I   +Y 
Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 180 TWDDEVSSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219


>gi|37520429|ref|NP_923806.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211423|dbj|BAC88801.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 238

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ +         G            + L    R D+  ++  L   G   L
Sbjct: 14  ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLP--GVDGL 71

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L    R      P++ ++        +     G DD ++KP   +E++ARV A+ RR  
Sbjct: 72  ALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAY 131

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S  R  +    + V  + R  ++ G    L  RE  +L  L  + G+  ++ ++   ++
Sbjct: 132 ASGYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G +D       ++ H+ KLR+KL  +      V +   +GY  
Sbjct: 192 G-YDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKF 233


>gi|152975000|ref|YP_001374517.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023752|gb|ABS21522.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 97/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++  ++ +    L+ + + D   I   ++  G+  +
Sbjct: 7   ILVVDDEDRIRRLLKMYLERENYVIDEADNGDT--ALEKALQNDYDLILLDIMMPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCKGIREKKATPVIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVS 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G+   L  +E  +L +L  +  K   + Q
Sbjct: 125 TTFFTQDTTTKDVIVFPHLTIDNDAHRITADGQEVNLTPKEYELLLFLAKSPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPNAAKMIVTVWGVGYKFEV 235


>gi|291287945|ref|YP_003504761.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885105|gb|ADD68805.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 224

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G       + +           D   ++  L       L
Sbjct: 5   ILIIEDEEQIALLLKDYLSQAGFEAHMHGTGKGALETVEKISPDAVILDIMLPEV--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S +P+I ++        L   + G DD + KP   RE++AR+ A+ RR   
Sbjct: 63  DICRGIRKKSALPIIMLTAKVEEIDRLIGLELGADDYICKPFSPREVVARLKAVLRRTSP 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + ++ +       GE   L R E  +L  +  + G   +++ + S+++G
Sbjct: 123 EKPVQSISIGSLTIYPELYKVSAGGEDIVLTRSEFMLLLTMAKHPGVVYSRSDLISSVHG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++    E  V+SHI  LRKKL   +  + + +   +GY I+ 
Sbjct: 183 -YEFEGYERTVDSHIKNLRKKLSEFVNDNIIHTIYGVGYKIEV 224


>gi|261406531|ref|YP_003242772.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329926951|ref|ZP_08281351.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
 gi|261282994|gb|ACX64965.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328938781|gb|EGG35157.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
          Length = 231

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G +++  ++ +  E L+ +  ED S I   L   G    
Sbjct: 5   ILIIEDETTIAQLERDYFELNGFAVDLCHTGD--EGLKLALNEDYSLIIVDLQLPGMNGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL   IR + +VP++ +S        +  F+ G DD + KP    E++AR  A   R   
Sbjct: 63  ELCSHIRKNKEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMRYVR 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    ++      + +    R   V+ +      RE  +LE+L ++  +   K ++
Sbjct: 123 LLGKQSPSPSSEIHIRGLVIDKTARRVFVRNQEVAFTTREFNLLEFLASHPNRVFNKHEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  I+G+ D + +   V  H+ KLR+K+  +      +++    GY  
Sbjct: 183 FERIWGM-DSSGDIATVTVHVRKLREKMELDPSNPQYIETVWGAGYRF 229


>gi|302190752|ref|ZP_07267006.1| two-component regulatory system response regulator [Lactobacillus
           iners AB-1]
 gi|309809744|ref|ZP_07703598.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 2503V10-D]
 gi|329919797|ref|ZP_08276748.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 1401G]
 gi|308169923|gb|EFO71962.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 2503V10-D]
 gi|328937144|gb|EGG33572.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 1401G]
          Length = 234

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L  K    L
Sbjct: 5   ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    + +I ++   +    +   + G DD V KP  +RE++ARV A  RR ++
Sbjct: 63  EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       N     G + +  +    E  G    L  RE  +L YL  + G+ + +  + 
Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +      +  ++R +GY +
Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYV 228


>gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 234

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 99/231 (42%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    +   EE L+   + +V  I   ++      +
Sbjct: 6   IMVVDDEKEIRELIAIYLKNEGYRV--LQAENGEEGLELLKKNEVHLIVLDIMMPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + N  E G +++        V  E   L  RE  ILE L  N+G  ++  QI
Sbjct: 124 MNGRISAQNENEVEIGDMKINVTTHKVTVADEEVKLTPREFAILELLARNKGMVMSAEQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +  ++   +    +N V  HI K+R+K+         V +   +GY I+ +
Sbjct: 184 YERVW-KEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233


>gi|223043539|ref|ZP_03613584.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|314933846|ref|ZP_07841211.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus caprae C87]
 gi|222443027|gb|EEE49127.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|313653996|gb|EFS17753.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus caprae C87]
          Length = 236

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E     E         + ++  ++  L  K    +E
Sbjct: 6   LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVEEEQPELIVLDVMLPKK--DGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR K 
Sbjct: 64  VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123

Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N   +              +  +  +     E+  L  +E  +L YL+  +G+ + +  
Sbjct: 124 VNEIEKEDTDEEDIIIDSIRIRPEFFEVYKDEELLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 184 MLNSVWN-YEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 256

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  +E            S    D+  ++  L   G    +
Sbjct: 19  LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLP--GMNGFQ 76

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R++    P+I ++   + +  +     G DD + KP    E+LARV+A+ RR+  
Sbjct: 77  ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 136

Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       N    G + ++ +  +  + G+   L  +E  +L YL    G  + + 
Sbjct: 137 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 196

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + + ++G FD    +  V+ H+S LRKKL        +DS R +GY +  N
Sbjct: 197 DLMNVVWG-FDYIGGQRTVDVHVSSLRKKLELDPESAHIDSIRGVGYKLVVN 247


>gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
 gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
          Length = 229

 Score =  234 bits (598), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +          +  ++      E           D+  ++  +  K     +
Sbjct: 5   LIADDNKQIVSILSEYCKKNNFTVSTVFDGEAALKEIEENEFDIILLDVMMPKK--DGFD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I I+        +   + G DD + KP    EI+AR+ AI RR+   
Sbjct: 63  VCRQVRTFSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRRITPK 122

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           N+ +        + +  +    ++  E+  L ++E  IL  L  N+ K   +  +   I+
Sbjct: 123 NDESAKIFIYDNLEIDLNNFTVKINDEIISLTKKEIEILWTLATNQNKVFTRENLLDLIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           G FD   E   V++HI +LR KL N       + +   +GY  D
Sbjct: 183 G-FDYFGESRTVDTHIKRLRAKLDNYKHDKWNIKTIWGVGYKFD 225


>gi|239834427|ref|ZP_04682755.1| Sensory transduction protein regX3 [Ochrobactrum intermedium LMG
           3301]
 gi|239822490|gb|EEQ94059.1| Sensory transduction protein regX3 [Ochrobactrum intermedium LMG
           3301]
          Length = 227

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 134/225 (59%), Positives = 171/225 (76%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S  ++D+ A+EAFLIG+    
Sbjct: 1   MIVVVDDRDIVTEGYSSWFGREGITTTGFTPTDFDEWVESVPQQDIMAVEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S    ++  E GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASAASSDDGTELGPIRVFSDGRDPQINGVDFPLPRRERRILEYLIANRGRRLNKAQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR ++GFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLREQMGFDPIDSKRFLGYCIN 225


>gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis AF2122/97]
 gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T92]
 gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T17]
 gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           T46]
 gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG]
 gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis
           AF2122/97]
 gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
          Length = 230

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       + +S R D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPR--LDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 123 PEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 183 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 225


>gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Nitrospira defluvii]
 gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB
           [Candidatus Nitrospira defluvii]
          Length = 238

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 102/226 (45%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G       +         +   D+  ++  L       L
Sbjct: 11  ILIVEDEKDILQLVKLYLEKEGFRTVSAMTGTEGLRQVKAEHPDLIILDLMLPE--LDGL 68

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR + +    P++ ++       T+   + G DD V KP   + ++ARV A+ RR
Sbjct: 69  EVCKRIRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALLRR 128

Query: 119 LKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           L+ + N  +T    GP+ V     +  + G+   L  +E  +LE+L+ N G+ + +  + 
Sbjct: 129 LERNANSPQTQYHYGPLTVDLSRHEVRLDGQEVALTAKEFGLLEHLLRNIGRVLTRDVLL 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           SA++G +D       V+ H+ +L++KL   L  D + S + LGY +
Sbjct: 189 SAVWG-YDYYGTTRTVDVHVRRLKQKL--PLLDDAIISIKSLGYKL 231


>gi|153011509|ref|YP_001372723.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151563397|gb|ABS16894.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 227

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 134/225 (59%), Positives = 171/225 (76%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S  ++D+ A+EAFLIG+    
Sbjct: 1   MIVVVDDRDIVTEGYSSWFGREGITTTGFTPTDFDEWVESVPQQDIMAVEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S    ++  E GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASAASNDSGTELGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKAQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR ++GFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLREQMGFDPIDSKRFLGYCIN 225


>gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 226

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G   +     +    ++++ RE    I   L+  G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLSAEGF--DTVAVTDGALAVETAEREQPDLILLDLMLPGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           ++ R IR  S VP+I ++        +   +SG DD VNKP   +E++AR+ A  RR   
Sbjct: 63  DICRAIRQDSAVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRRTDD 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G + +   G   +   E   L   E  +L  L     +   + ++   ++G 
Sbjct: 123 EPAETLEVGDLTIDVPGHTVKRGDEEISLTPLEFDLLLELARKPQQVFTREELLGKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +  A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221


>gi|300932509|ref|ZP_07147765.1| two-component system response regulator [Corynebacterium resistens
           DSM 45100]
          Length = 235

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D         G  +E  +S +    +    + D   ++  +   G     
Sbjct: 12  LVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVDEYQPDAFILDVMMP--GMDGFS 69

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           L   +RA     P++ ++    ++  +     G DD V KP    E++ R+  I RR+  
Sbjct: 70  LLNKLRAKGHDAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSP 129

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  +N      + +  D  +    G+V  L   E ++L YLM N    ++K +I   +
Sbjct: 130 EDEKESNVISYEDLTLDDDMHEVTKAGKVVDLSPTEFKLLRYLMVNAEVVLSKAKILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+        + + R +GY +
Sbjct: 190 WN-YDFGGDGNVVESYVSYLRRKIDTD-DPRLIHTVRGVGYVL 230


>gi|297193530|ref|ZP_06910928.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718196|gb|EDY62104.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 237

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E                 D+  ++  +       L
Sbjct: 7   ILIVDDEPAVREALQRSLAFEGYGTEVAADGIDALARAEVYAPDLIVLDIQMPR--MDGL 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  TAARRLRAAGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +      +R+    R+         L R E  +LE  +A+  + + + Q
Sbjct: 125 YASAGPGGAEEDVLSFADLRMDLATREVTRGTRRVELTRTEFTLLELFLAHPRQVLTREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 185 ILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYAL 231


>gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 248

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D   +    +G  +    +             DV  ++  L       LE
Sbjct: 20  LVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDF--DGLE 77

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R H   VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 78  VMRRVRGHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  +     E G +R+  D  +     +   L   E  +L YLM N  + ++K QI   +
Sbjct: 138 SEEKPASLLEVGDLRMDEDSHEVWRGDDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE +IS LR+K+ +K     + + R +GY +
Sbjct: 198 WN-YDFGGQANIVELYISYLRRKI-DKGREPMIHTMRGVGYVL 238


>gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
 gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
          Length = 225

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 102/224 (45%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++  +  E           D+  ++  L   G   L
Sbjct: 3   ILVVEDERKIALALKKGLEQEAFAVDVVHDGESGLSYAEDDSYDLIVLDRMLP--GLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   ++ P+I ++    ++  +   D+G DD + KP    E+LAR+ ++ RR +
Sbjct: 61  EICRQLRESGAKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRRPQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + G + + +   + +       L ++E  +LEYLM ++G+ V K  I + ++ 
Sbjct: 121 DLLGEVLQIGDLTLNTITYEVKRGTTPVSLTQKEFALLEYLMRSQGRVVTKDMILNHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
            +D  +  N +E +I  LR K+       P  + ++R  GY ++
Sbjct: 181 -YDADILPNTIEVYIGYLRSKVERPFEGHPRLIHTQRGFGYKME 223


>gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 222

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 7/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++D        +               +  +   D+  ++  L         
Sbjct: 5   LVIEDEEGMRDILKTYLEKNNFDALFAEDGSTGINMFKNNSFDIVLLDVMLPD--MSGWN 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR  S++P++ I+        L  F+ G DD V KP   RE++AR+ AI  R K  
Sbjct: 63  VLKTIRESSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAILSRSKWA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N      I + +D R  +V G+   L  +E  +L  L  N GK +++ +  + ++G 
Sbjct: 123 ESDNSISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNIVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   +   V++HI +LR+KL +K   D + +    GY +
Sbjct: 182 YEFFGDLRTVDTHIKQLREKLGDK--RDIIKTVWGYGYKL 219


>gi|322411361|gb|EFY02269.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 235

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G S +          L  +   D   ++  L       +
Sbjct: 5   ILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPR--LDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA + + P++ +S        +   + G DD + KP   RE++ARV AI RR  
Sbjct: 63  EVCKRLRAKAIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRRTS 122

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                 +           G + V+ D  +      +  L  +E  +L YLM +    + +
Sbjct: 123 KEQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++   I+G +D   E  +V+ HI KLR K+ +       + + R  GY  
Sbjct: 183 ERLLERIWG-YDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKF 232


>gi|209524098|ref|ZP_03272649.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209495473|gb|EDZ95777.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 230

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G +    NS +       S   D+  ++  L  +     
Sbjct: 4   ILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLEQACSHNFDLLILDLGLPDR--DGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           ++ + +R   +  P+I ++    L   +   ++G DD V KP    E+LARV A  R   
Sbjct: 62  QILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQP 121

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +    T  I +    R+ +V      L  +E  +LE  + +  + +++ Q+   
Sbjct: 122 SKNADDDKTLSTANICLNLYTREVQVADRTLQLSAKEFLLLETFLRHPEQVLSREQLLDQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ ++  LRKKL    G D +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKL----GSDRIETVRGMGYRL 220


>gi|329115641|ref|ZP_08244363.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001]
 gi|326695069|gb|EGE46788.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001]
          Length = 225

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V++       + G  +E     +    L +S + DV  ++  L G G + L 
Sbjct: 4   LLVEDDQTVRNFIAKGLAEAGHLVEQAEDGKSGLSLAASEKFDVIILDRMLPG-GVEGLH 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + +R  +   P++ +S    +   +    +G DD V KP    E+ AR+ A+ RR + 
Sbjct: 63  ILQTLRNQNNLTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRNRN 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R   G + +    R+    G+   L  RE R+LE+LM + G+ V +T +   ++
Sbjct: 123 EAQPQTRLTIGDLEIDLLSRNVRRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEGVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR+K+        V + R  GY +
Sbjct: 183 D-YHFDPQTNVIDVHISRLRQKIDRPFHHPLVHTIRNAGYML 223


>gi|229551853|ref|ZP_04440578.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314797|gb|EEN80770.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 248

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +   +   N+ + EE L     A +    I   L      
Sbjct: 8   LLMIEDNTSVAEMMAMFFQKEKWEV--VNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMD 65

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++ + IR  S+ VPLI ++   +    +   + G DD V KP     ++AR+ A++RR
Sbjct: 66  GMQVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 125

Query: 119 LKVSNNR---------------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMA 162
            +V                    ET   ++ +  R+  + G+    L  +E  +L  L  
Sbjct: 126 AEVGAEAGAEQATPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSK 185

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 186 SPKQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 242


>gi|182680204|ref|YP_001834350.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636087|gb|ACB96861.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 230

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G+ +           + ++   D+  ++  +       L
Sbjct: 5   ILVVDDDPHIREVICFALEKAGMRVVVAEDGSQVLTIMAAQTPDLIVLDIGMPE--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR  S+VP++ +S        +   + G DD V KP   RE++ARV  I +RL+ 
Sbjct: 63  ETCRRIRKTSEVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILKRLRP 122

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +N    G + +          G    L   E  ILE   A   +   + QI ++ 
Sbjct: 123 KEAEPSNGLTHGELSLDLASHRATFHGSALSLTALEFSILECFTARPNQVFTREQILASA 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y      V +  ++SHI  +R KL    G   +++   +G+ +
Sbjct: 183 YNNA-INVSDRTIDSHIRNIRAKLALAGGGGCIETVHGIGFRL 224


>gi|73855984|gb|AAZ88691.1| putative 2-component transcriptional regulator [Shigella sonnei
           Ss046]
          Length = 280

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 60  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 117

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 118 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 177

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 178 LNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 236

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 237 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 275


>gi|56963624|ref|YP_175355.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909867|dbj|BAD64394.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 228

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +   +      E            +  I+  L        
Sbjct: 3   ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLP--KMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IRA S+VP+I +S   +    +  F  G DD V KP    E+ ARV A  RR + 
Sbjct: 61  ALCEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYER 120

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S     +R +   + +   GR    +GE   L  +E  +L +L  + G+   K ++++A+
Sbjct: 121 SYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +    +  +   V  H+  +R KL++       +++   +GY  
Sbjct: 181 WNG--DGFDSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKF 222


>gi|291544436|emb|CBL17545.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 224

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 103/228 (45%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58
            +++DD A ++     L   +    EG+   E E+ +Q+      +D   I   ++    
Sbjct: 4   LLIVDDEANIR-----LVVKEYAEFEGYEVAEAEDGMQAVELVKSQDFDVIIMDIMMPRL 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
                 + I+ +  +P+I +S        L  F+ G+DD V KP   +E++ARV A+ +R
Sbjct: 59  DGFSACKEIKKYKNIPVIMLSARGEEYDKLFGFELGIDDYVVKPFSPKELMARVKAVIKR 118

Query: 119 LKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + +     +R +   + +   GR+  V G+   +  +E  +L YL+ N    + + ++ 
Sbjct: 119 SEHAAPANPDRLKFEGLEIDMAGREVYVNGKRVSMTPKEYDLLFYLVKNSNIALTRDKLL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +D   ++  V++HI  LR  L        + + R +GY  + 
Sbjct: 179 EEVWG-YDFFGDDRTVDTHIKMLRNSLGEY--RKFIVTLRGMGYKFEV 223


>gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 224

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +        +G S++  + L+ EE L      +   +   ++       
Sbjct: 3   ILLAEDEIDLNNIITKYLKKNGYSVD--SVLDGEEALDYLEYGEYDLVILDIMMPKVNGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +R   +   ++ ++   S    +   D G DD + KP    E++AR+ A+ RR  
Sbjct: 61  EVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N+   G + + +  +     G+   L  +E  +LEYLM ++ + +++ QI   ++ 
Sbjct: 121 GNSSNKLMIGNLVLNTSEKSVTRGGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   + N+++  I  +RKK+  + G   + +KR LGY I
Sbjct: 181 -FDYEGDSNIIDVLIKNIRKKIDVEGGKQIIYTKRGLGYVI 220


>gi|238916038|ref|YP_002929555.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238871398|gb|ACR71108.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 238

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G  +E  N              D+  ++  L   G    
Sbjct: 13  ILIVEDEESIADIEKDYLELNGYEVEVCNDGTSGLAAALHEDIDMCILDIMLP--GTDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R    +P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 71  EICKQVREVKDIPIIMVSAKKEDIDKIRGLGVGADDYMTKPFSPSELVARVKAHLARYDR 130

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K +NN  E   I++    R   V GE  P   +E  +L +L  N      K ++F
Sbjct: 131 LVSNSKNNNNIIEIRGIKIDKTARRVFVNGEEKPFTTKEFDLLTFLAENPNHVFTKEELF 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + D   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 191 KEIWDM-DSIGDIATVTVHIKKIREKIELDTSKPQYIETIWGVGYRF 236


>gi|30019625|ref|NP_831256.1| transcriptional regulatory protein resD [Bacillus cereus ATCC
           14579]
 gi|206967773|ref|ZP_03228729.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
 gi|218234890|ref|YP_002366257.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
 gi|218896505|ref|YP_002444916.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
 gi|228900155|ref|ZP_04064388.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           4222]
 gi|228907207|ref|ZP_04071068.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           200]
 gi|228920285|ref|ZP_04083633.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228938687|ref|ZP_04101292.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228951952|ref|ZP_04114050.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228957851|ref|ZP_04119591.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228964548|ref|ZP_04125658.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228971569|ref|ZP_04132193.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978180|ref|ZP_04138558.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           Bt407]
 gi|229016833|ref|ZP_04173761.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
 gi|229023038|ref|ZP_04179553.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
 gi|229043317|ref|ZP_04191037.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
 gi|229069128|ref|ZP_04202420.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
 gi|229078758|ref|ZP_04211312.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
 gi|229109030|ref|ZP_04238631.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
 gi|229126890|ref|ZP_04255902.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
 gi|229144175|ref|ZP_04272589.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
 gi|229149774|ref|ZP_04278004.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
 gi|229177983|ref|ZP_04305355.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
 gi|296502146|ref|YP_003663846.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
 gi|29895169|gb|AAP08457.1| Transcriptional regulatory protein resD [Bacillus cereus ATCC
           14579]
 gi|89212828|gb|ABD63914.1| transcriptional regulatory protein ResD [Bacillus cereus]
 gi|206736693|gb|EDZ53840.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
 gi|218162847|gb|ACK62839.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
 gi|218544434|gb|ACK96828.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
 gi|228605471|gb|EEK62920.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
 gi|228633805|gb|EEK90404.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
 gi|228639183|gb|EEK95599.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
 gi|228656830|gb|EEL12656.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
 gi|228674499|gb|EEL29742.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
 gi|228704631|gb|EEL57063.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
 gi|228714073|gb|EEL65956.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
 gi|228726031|gb|EEL77268.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
 gi|228738261|gb|EEL88742.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
 gi|228744394|gb|EEL94468.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
 gi|228781652|gb|EEM29852.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           Bt407]
 gi|228788228|gb|EEM36183.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228795148|gb|EEM42644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228801767|gb|EEM48644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228807875|gb|EEM54396.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228821063|gb|EEM67083.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228839484|gb|EEM84777.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228852428|gb|EEM97221.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           200]
 gi|228859561|gb|EEN03988.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           4222]
 gi|296323198|gb|ADH06126.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
 gi|326939195|gb|AEA15091.1| transcriptional regulatory protein resD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 238

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++  +   G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMP--GKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235


>gi|253773085|ref|YP_003035916.1| transcriptional regulatory protein YedW [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324129|gb|ACT28731.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448922|gb|ACX39344.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli DH1]
 gi|315136606|dbj|BAJ43765.1| transcriptional regulatory protein YedW [Escherichia coli DH1]
          Length = 260

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S             L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|39998208|ref|NP_954159.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39985154|gb|AAR36509.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
          Length = 227

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +                  D+  ++  L   G   L
Sbjct: 5   ILIVEDEEKIATLLRDYLRLAGFDVCCLAGGAEAAPWVREHAPDLVLLDLMLP--GRDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S VP+I I+        L   + G DD + KP   RE++ARV A+ RR   
Sbjct: 63  EICKDVRVFSSVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSGP 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               A  G + +        + G    L   E ++L++L A+ G+  ++ Q+   IY   
Sbjct: 123 GQTTALAG-LVMDGACYRAALDGHELDLTAVEFKLLQFLAASPGRIYSRQQLMDRIY-PD 180

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +  V +  ++SHI KLRKK+ +   G D + S   +GY  +
Sbjct: 181 ERVVADRTIDSHIKKLRKKIADVAPGEDLIHSVYGVGYKFE 221


>gi|114046179|ref|YP_736729.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113887621|gb|ABI41672.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 253

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +         +    SL     L  + R D+  ++  L       L
Sbjct: 23  ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPD--GDGL 80

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + +R   Q +P++ ++       T+   +SG DD + KP    E+ AR  A+ RR  
Sbjct: 81  LLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHL 140

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    E   +R+  D R+         L  +E  +L +L  +  +  ++TQ+  A+
Sbjct: 141 SAAPTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +G +     E+ V SHI++LR KL +  G  + V +   +GY  
Sbjct: 201 WG-YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243


>gi|257785147|ref|YP_003180364.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473654|gb|ACV51773.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 237

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  +++D   A    +   ++G    +           D+  ++  L        
Sbjct: 8   ILIVEDEKVIRDAVSAYLERENYVVKGVGDGQSAVEEFEKHAFDLVILDLMLP--KLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++    ++  +   + G DD + KP   RE++ARV A++RR   
Sbjct: 66  RVCRAIRDTSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRRTYS 125

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      + G + +   G    +  E   L   E ++L  L    G+   + ++   +
Sbjct: 126 EPDTAVDVLDYGTLTIDISGHKILINNEEVDLTASEFKLLTTLARYPGRVYTRMELVEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            G +D    E  ++SH+  LR KL +       + +   +GY  +
Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPRWLFTVHGVGYRFE 229


>gi|227501322|ref|ZP_03931371.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227216555|gb|EEI81961.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 219

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D   +++       + G  ++ F               D+  ++  L  K    
Sbjct: 1   MIYVVEDDKSIRNLLEYALREKGYEMKSFEDGSEIVREVKDKPCDLLILDIMLPEK--DG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           + + + IR  S +P+I ++        +   D G DD + KP    E L+RV A+ RR  
Sbjct: 59  ISILKEIRQFSNLPIIMLTAKSDEFDKVMGLDLGADDYITKPFSILEFLSRVKAVLRRSN 118

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   +      +R+ +  R  +V+GE   L  +E  +L   ++N G  +++      I+G
Sbjct: 119 KKDTDHISYKEVRLNTKKRSVKVKGEKVDLTYKEFEMLLLFLSNIGNVISRDDFLLKIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL+       +++ R LGY  
Sbjct: 179 -YDYEGETRTVDVHIASLRAKLKESG--KYIETVRNLGYRF 216


>gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
 gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
          Length = 243

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGYEVETAGSGSEAIEVIERTQPDLIILDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQEGIDAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVGDLEINEDSHDVTRAGKPIDLSPTEYKLLCYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+ +    D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDDITVEDEDGTTHKVQPLIETKRGIGYMI 238


>gi|254394028|ref|ZP_05009112.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294814967|ref|ZP_06773610.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443338|ref|ZP_08218072.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197707599|gb|EDY53411.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327566|gb|EFG09209.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 245

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDSTIVDAIAARLRAEGFLVQTAADGPAAVDAAEAWQPDLMVLDVMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+G+   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRGDDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 234

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         + G  ++             ++  D+  ++  L       L
Sbjct: 3   ILVVEDDAGILRFIRQGLTEAGYVVDSAADGRRGVECALTSDYDLIVLDVLLPE--LDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R    Q P++ ++   ++Q  +   ++G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  SVLRQLRGQGLQTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRRPP 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++     G + + +  R  +       L  RE  +LEYLM +  + +++TQI   ++ 
Sbjct: 121 LQSDVALRVGDLELDAAQRLVKRGERPIELSPREFSLLEYLMRHPNQVLSRTQIAQHVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            FD   +  V++ +I  LR+K+        + + R +GYS+  
Sbjct: 180 SFDFYGDYKVIDVYIGYLRRKIDRHGASSMIHTVRGVGYSMRC 222


>gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++    +  +    +E + +    E      RE +  +   ++   E    
Sbjct: 6   LIVDDEQDMRNLIEMMLNNS--DIETYTAASGTEAYDIIVREKIDLVLLDVMMPHEDGFV 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA S VP+I ++   + +  +     G DD + KP  H E+ AR+ A+ RR   +
Sbjct: 64  VCQSIRAMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVLRRSGAN 123

Query: 123 NNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      GPI++    R   V G+  PL  +E  +L   M N G    + Q+   I
Sbjct: 124 IAELQQKYVVFGPIKIDEIARKVSVHGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + D       V++HI  LR KL  K     + +   +GY  D
Sbjct: 184 WDI-DYVGGTRTVDTHIKTLRIKLG-KEAAAHIQTVWGVGYRFD 225


>gi|167855905|ref|ZP_02478655.1| YgiX [Haemophilus parasuis 29755]
 gi|167852993|gb|EDS24257.1| YgiX [Haemophilus parasuis 29755]
          Length = 223

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G S++ F   +      SSA  D   ++  L       L
Sbjct: 3   ILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTLP--KMDGL 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           E+ +   RA+  VP++ ++   +L   +     G DD + KP    E++AR+ A+  RR 
Sbjct: 61  EVLQSWRRANQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   E   ++   + R   ++ +   L  RE  +LE  M N+ + + ++ I   +Y 
Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 180 TWDDEVSSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219


>gi|291454109|ref|ZP_06593499.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357058|gb|EFE83960.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 246

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 23  LVVEDDTTIVEAISARLRAEGFLVQTATDGPAAVDTAEAWQPDLLILDIMLP--GFDGLE 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 81  VCRRVQAQRPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 140

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V  E   L   E  +L  L       +++ Q+ 
Sbjct: 141 ALAAATPRSGILRLGELEIDHAQRRVRVHAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|242373983|ref|ZP_04819557.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348337|gb|EES39939.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 236

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +E   + + EE LQ    E    I   ++   +  +E
Sbjct: 6   LVVDDEQSIVTLLKYNLETAGYIVEV--AYDGEEALQKVEDEQPELIVLDVMLPKKDGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR+    VP++ ++        +   + G DD + KP   RE++ARV AI RR K 
Sbjct: 64  VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123

Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +   +              +  +  +     E+  L  +E  +L YL+  +G+ + +  
Sbjct: 124 VSEIEKEDTDEEDIIIDSIRIRPEFFEVYKDEELLELTPKEFELLLYLIERQGRVITREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + ++++  ++ A +  +V+ HIS LR KL  N      + + R LGY ++
Sbjct: 184 MLNSVWN-YEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 227

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 105/225 (46%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  ++   + +  E LQS+  ED   I   L+      L
Sbjct: 4   ILLVEDEKNLARFIELELRHEGYEVKV--AYDGREGLQSALEEDWDVILLDLMLPKLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   + P+I I+   S+   +   D G DD + KP    E+LAR+ AI+RR++ 
Sbjct: 62  EVCRRLRQEKETPVIMITARDSIMDRVSGLDHGADDYIVKPFAIEELLARLRAIFRRMEY 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  +       +   + +  + R  +  G+   L +RE  +L  L+ N+   + +  + +
Sbjct: 122 AEPKKAALTTYKFRDLVLEKESRLVKKAGKTIELTKREYDLLLTLLENKNIVMTREALLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G ++  VE NVV+ +I  LR K+  +     + + R  GY +
Sbjct: 182 KVWG-YETEVETNVVDVYIRYLRNKIDTEGEDSYIQTVRGTGYVM 225


>gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAMHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|254976863|ref|ZP_05273335.1| DNA-binding response regulator [Clostridium difficile QCD-66c26]
 gi|255094250|ref|ZP_05323728.1| DNA-binding response regulator [Clostridium difficile CIP 107932]
 gi|255316003|ref|ZP_05357586.1| DNA-binding response regulator [Clostridium difficile QCD-76w55]
 gi|255518660|ref|ZP_05386336.1| DNA-binding response regulator [Clostridium difficile QCD-97b34]
 gi|255651782|ref|ZP_05398684.1| DNA-binding response regulator [Clostridium difficile QCD-37x79]
 gi|260684808|ref|YP_003216093.1| hypothetical protein CD196_3079 [Clostridium difficile CD196]
 gi|260688466|ref|YP_003219600.1| hypothetical protein CDR20291_3125 [Clostridium difficile R20291]
 gi|306521572|ref|ZP_07407919.1| hypothetical protein CdifQ_18911 [Clostridium difficile QCD-32g58]
 gi|260210971|emb|CBA66245.1| putative uncharacterized protein [Clostridium difficile CD196]
 gi|260214483|emb|CBE06963.1| putative uncharacterized protein [Clostridium difficile R20291]
          Length = 232

 Score =  234 bits (597), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 89/230 (38%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  F S        +    D++ ++  L   G    
Sbjct: 5   ILVVDDERDIADLIEVYLTNENYIVYKFYSGLDALNCINLNEFDLAILDVMLP--GVNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 63  SLCQKIREKYTYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQIRRYKK 122

Query: 122 SNNRAETG----------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +   ++G           + + +   +  + G+   L   E  IL  L+ N+G  V   
Sbjct: 123 YSGSLQSGEELSHIFSFLGLELNTQTYECHLNGKALSLTPTEFSILHVLLKNKGSVVNSE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +F AI+         N +  HI  LR+KL + +     + +   +GY I
Sbjct: 183 NLFHAIWKDEYYNKSNNTITVHIRHLREKLGDTVDEAKYIKTIWGVGYKI 232


>gi|223042407|ref|ZP_03612456.1| DNA-binding response regulator [Staphylococcus capitis SK14]
 gi|222444070|gb|EEE50166.1| DNA-binding response regulator [Staphylococcus capitis SK14]
          Length = 225

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D   +   ++      F  L  EE L    +E+V+     ++  G    E
Sbjct: 6   LVVDDDRKILDYVKSHLINEHFETHAF--LSGEEALHFLEKENVAIAIVDIMMNGINGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L + ++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR ++ 
Sbjct: 64  LCKTLKEDYDIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQIN 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  + G + +     +  V  +   LP +E ++L  L++N      +  I   I+G F
Sbjct: 124 AESELKLGNLTLNQPYMEINVDAKTINLPNKEFQLLFLLVSNPKHIFTRNDIIEKIWG-F 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   ++  V+ HI +LR+KL        + + R  GY ++ +
Sbjct: 183 DYEGDDRTVDVHIKRLRQKLSRLGASISIHTVRGQGYKVNQD 224


>gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061]
 gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061]
          Length = 228

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 22/231 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-------EGFNSLEFEEWLQSSAREDVSAIEAFLI 54
            ++++D   +          +G  +       +G  +LE E +       D+  ++  L 
Sbjct: 6   ILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEESF-------DLVLLDVMLP 58

Query: 55  GKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 LE+ R +R  +   P+I I+   S+   +   D G +D + KP    E+LAR+ 
Sbjct: 59  E--LSGLEVLRRVRKTNTATPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIR 116

Query: 114 AIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A  R    +    ET      + V    RD +  G++  L  RE  +L +L+ ++ + + 
Sbjct: 117 AQLRLNIHAQEEKETELSIADLTVNEKTRDIQRAGQMLELTPREFDLLVHLLKHQQQVLT 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+ +A++G FD   + NVV+ +I  LRKK+        + + R +GY +
Sbjct: 177 RDQLLTAVWG-FDYFGDTNVVDVYIRYLRKKVDYPFEKQLIHTVRGVGYVM 226


>gi|168334600|ref|ZP_02692753.1| two component transcriptional regulator, winged helix family
           protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 232

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V+++D   + D        +G  +      E    +  +   D+  ++  +       L 
Sbjct: 5   VVVEDEKAISDIIKYNLEKEGYEVLVAYDGEEGLEMILTTNPDIVLLDIMMP--KMDGLS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +++R    +P+I ++        +   + G DD + KP   RE++ARV A  RR    
Sbjct: 63  VCKLVRKTKNMPIIMLTAKAEEIDKVVGLELGADDYITKPFGMRELIARVKAQLRRGTSH 122

Query: 123 ----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      N    G +R+  +  +    G++  L  RE  +L++L   +GK   +  
Sbjct: 123 EEIRIPEPLDENTIVEGNLRINLEKYEVTKSGKIIDLTLREFELLKFLAMQKGKVFTREI 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +   ++G F+   +   V+  + +LR+K+ +       V +KR +GY  
Sbjct: 183 LLEKVWG-FEYFGDVRTVDVTVRRLREKVEDDPAKATYVLTKRGVGYYF 230


>gi|74316154|ref|YP_313894.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055649|gb|AAZ96089.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 220

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 9/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D AL+ DG  A     G +++     E      ++ R     ++  L  +    L
Sbjct: 3   ILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++    L+  +   D G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    + G I +    R    +G+   L  RE  +L  L+ + G  + +  +   +Y 
Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +DE V  N +E H+  LR+KL    G D + + R +GY 
Sbjct: 180 TWDEGVGSNALEVHVHHLRRKL----GNDVIRTVRGVGYM 215


>gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa]
 gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa]
          Length = 239

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +      E    +      ++  ++  +        
Sbjct: 8   ILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMP--KLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR + 
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRRTEN 125

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +    + G +++  + R     GE   L   E  +LE L++  G+  ++ QI
Sbjct: 126 PTLSTTSTNGENLQIGFLKIDINKRQVFKNGERIRLTGMEFSLLELLISKMGEPFSRAQI 185

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
              ++G   +  ++  VV+ HIS+LR KL  N    D + + R +GY
Sbjct: 186 LQEVWGYTPERHIDTRVVDVHISRLRSKLEENPSNPDLILTARGIGY 232


>gi|168180761|ref|ZP_02615425.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182668592|gb|EDT80571.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 235

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G  + + F+ LE  E  Q S    +  ++  +       
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQ-SENYHMVIMDIMMPV--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R IR  S+VP+I +S        +     G DD + KP    E++ARV    RR  
Sbjct: 63  IEAMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAI 122

Query: 121 VSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N           E G ++   +       G+   L  +E +IL+    N  +   K Q
Sbjct: 123 YYNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I+ +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 183 IYDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|220932165|ref|YP_002509073.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219993475|gb|ACL70078.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 227

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++    A       S+E  +  +      +    D+  ++  L        
Sbjct: 5   ILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPE--ISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR   Q P++ ++   + +  ++ F  G DD + KP   RE+LAR+ AI RR   
Sbjct: 63  EVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122

Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +AE      G +++  +     V G    L R E  IL  L+ N G+   + Q+   
Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + GL +    +  +++HI  +RKKL N      + +   +GY  +
Sbjct: 183 VMGL-EYKGYDRTIDAHIKNIRKKL-NLEKNQLIITVYGVGYKFE 225


>gi|295677563|ref|YP_003606087.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437406|gb|ADG16576.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 220

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      ++   D++ ++  L  +    L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALHAAAAQPYDLALLDLGLPKR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLRALRARGNALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216


>gi|167769573|ref|ZP_02441626.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM
           17241]
 gi|167668541|gb|EDS12671.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D  +      G +++G ++ +   +       D++ ++  +   G   L
Sbjct: 3   ILVADDERELLDITVKRLKAQGYAVDGCDNGDDAAYYLEQTPYDLAILDIMMP--GRDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA  +  P++ ++   ++   +   D+G DD + KP    E+LAR+  + RR  
Sbjct: 61  SILRGLRAAGRTLPVLLLTALDAVGDRVSGLDAGADDYLTKPFAFDELLARIRVLLRRSS 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +    R     G+   L  +E  ILEYL+ N+G  +++ Q+ S ++ 
Sbjct: 121 SDKAVVLTAEDLTMELSTRTVRRAGQEITLSSKEYAILEYLLRNKGVVLSRAQLESHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N+V+ ++  LR+K+ +      + + R +GY+I
Sbjct: 181 -YDFEGGSNIVDVYVRYLRRKIDDPFEKKLIQTVRGVGYTI 220


>gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1]
 gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1]
 gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 234

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 101/231 (43%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +    + + EE L+   + +V  I   ++      +
Sbjct: 6   IMVVDDEKEIRELIAIYLKNEGYRV--LQAEDGEEGLELLKKNEVHLIVLDIMMPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + N  E G +++        +  +V  L  RE  ILE L  N+G  ++  QI
Sbjct: 124 MNGGISVQNENEVEIGDMKINVTTHKVTIADQVVKLTPREFAILELLARNQGMVMSAEQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +  ++   +    +N V  HI K+R+K+         V +   +GY I+ +
Sbjct: 184 YERVW-KEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233


>gi|22125280|ref|NP_668703.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis KIM 10]
 gi|45442492|ref|NP_994031.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808286|ref|YP_652202.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Antiqua]
 gi|108811448|ref|YP_647215.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Nepal516]
 gi|145599475|ref|YP_001163551.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Pestoides F]
 gi|162420800|ref|YP_001607462.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Angola]
 gi|165926055|ref|ZP_02221887.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937134|ref|ZP_02225699.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008422|ref|ZP_02229320.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212312|ref|ZP_02238347.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398888|ref|ZP_02304412.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421266|ref|ZP_02313019.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424469|ref|ZP_02316222.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229838428|ref|ZP_04458587.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895415|ref|ZP_04510587.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Pestoides A]
 gi|229898995|ref|ZP_04514139.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901707|ref|ZP_04516829.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Nepal516]
 gi|270489901|ref|ZP_06206975.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504581|ref|YP_003568643.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis Z176003]
 gi|21958154|gb|AAM84954.1|AE013741_1 transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis KIM 10]
 gi|45437357|gb|AAS62908.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108775096|gb|ABG17615.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108780199|gb|ABG14257.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|145211171|gb|ABP40578.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|162353615|gb|ABX87563.1| transcriptional regulatory protein BaeR [Yersinia pestis Angola]
 gi|165914997|gb|EDR33609.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922259|gb|EDR39436.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992804|gb|EDR45105.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206243|gb|EDR50723.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960755|gb|EDR56776.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051392|gb|EDR62800.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056351|gb|EDR66120.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681636|gb|EEO77730.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Nepal516]
 gi|229687940|gb|EEO80012.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229694794|gb|EEO84841.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701570|gb|EEO89597.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Pestoides A]
 gi|262362424|gb|ACY59145.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis D106004]
 gi|262366567|gb|ACY63124.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis D182038]
 gi|270338405|gb|EFA49182.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355040|gb|ADE65381.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis Z176003]
 gi|320014344|gb|ADV97915.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 239

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +              +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLP--GSDGIT 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR  + 
Sbjct: 73  LCREIRRFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +  P+ +         QG +  L   E R+L+ L +  G   ++ Q+ + +Y  +
Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              V +  ++SHI  LR+KL    G  P + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLELLDGEKPFIRAVYGMGYRWE 232


>gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus
           amyloliquefaciens LL3]
          Length = 250

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD   +++    +    G  +      E    L  S   D+  ++  +       
Sbjct: 28  VILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMP--KMDG 85

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   +R+ + +P++ ++        +  F SG DD + KP    E+ ARV A+ +R +
Sbjct: 86  FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 145

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  +    G + +    R     G     LPRRE  +L  L     K  ++  +   I+
Sbjct: 146 ITAEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIW 205

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   +E  V+ HI +LR++   K     + + R LGY  
Sbjct: 206 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGYRF 246


>gi|229102179|ref|ZP_04232889.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
 gi|228681249|gb|EEL35416.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
          Length = 238

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++  +   G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMP--GKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235


>gi|209527087|ref|ZP_03275602.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209492515|gb|EDZ92855.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 233

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S +   +      +    R DV  ++  L   G   L
Sbjct: 3   ILIVEDEPEIALLIRRTLEAEGFSCQISQNGLSALEIFQQQRPDVIILDLMLP--GLDGL 60

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   IR         ++ ++        +    +G DD + KP   RE++ARV A+ RR
Sbjct: 61  EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120

Query: 119 L---KVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKT 171
                      +T    V  D R    Q     E   L   E  +L   ++  G+  ++T
Sbjct: 121 SLRQGGQTQTYQTAHFTVDIDQRKANFQNHGNTEPLDLTTLEFNLLATFLSYPGRVWSRT 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           Q+   ++G  D   +E VV++H+++LRKK+  +      + +   +GY  + N
Sbjct: 181 QLIDKLWG-DDFFGDERVVDTHVARLRKKVEPDPSHPTFIKTVTGVGYKFEDN 232


>gi|154483403|ref|ZP_02025851.1| hypothetical protein EUBVEN_01106 [Eubacterium ventriosum ATCC
           27560]
 gi|149735655|gb|EDM51541.1| hypothetical protein EUBVEN_01106 [Eubacterium ventriosum ATCC
           27560]
          Length = 222

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  L++D + +++  I      G+  +GF                +  ++  L    E  
Sbjct: 1   MIYLVEDDSSIRELVIYALNSTGLEAKGFEKPSEFWKAVEEEEPSLVILDVMLPE--ESG 58

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ + IR++  +   P+I  +   S    ++  +SG DD ++KP    E++ARV A+ R
Sbjct: 59  IDVLKKIRSNPAIEKLPVIMETAKTSEYDRINGLESGADDYISKPFSMMEMVARVKALIR 118

Query: 118 RLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  +   +     + V       +V      L  +E  +L  L+ NRG  +++ Q+ +
Sbjct: 119 RSEYKHEEKDYTINNLYVCPIKHLVKVDDREVVLTLKEYEMLCLLLKNRGIVLSREQLLN 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +    E   V+ H+  LR+KL      D + + R +GY I
Sbjct: 179 KIWG-YSFDGESRTVDVHVRTLRQKLGTAG--DVIKTIRGVGYKI 220


>gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 220

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E       S   D+  ++  L  +    L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAAGSQPYDLVLLDLGLPKR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G + + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GAELIRNVRGLGYMI 216


>gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
 gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
          Length = 255

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 104/228 (45%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +           L ++ + D+  ++  L        
Sbjct: 26  LLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPD--MDGF 83

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA    +P++ ++    ++  ++   +G DD V KP    E++AR+ AI RR K
Sbjct: 84  TVTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 143

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++         + +  +  +    G++  L   E ++L YLM N G+ V+K+QI   +
Sbjct: 144 HGSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHV 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-----FDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LR+KL             + ++R +GY +
Sbjct: 204 W-EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLL 250


>gi|228961124|ref|ZP_04122750.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228798567|gb|EEM45554.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 232

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D        +G  +      E    +  + R D+  ++  +        
Sbjct: 6   ILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQRIDLVVLDIMMP--KMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +RA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQVRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2]
 gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2]
          Length = 240

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D + +         D+G  +   +  +    L+   +    A+   L+  G   L
Sbjct: 7   IFLVEDDSDIASLLQLSLKDEGYEI--VHEADGARALEQLEKHVWDAVILDLMLPGVDGL 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R IR  S  +P+I IS   S    +   + G DD + KP    E++ARV A++RR  
Sbjct: 65  EICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L++         + +    R+  + G+   L  RE  +L +   + G+  ++  +
Sbjct: 125 AMSQNLRMEAGIITVHGVEIDPLAREVRLHGKSLDLTPREFDLLYFFARHPGEVFSRQAL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V SHI++LR K+  +    + + +    GY +
Sbjct: 185 LDQVWG-YQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKL 231


>gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8]
 gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8]
          Length = 225

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 105/220 (47%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +   A     G  +    + + E+ L+   + D+  ++  L   G   LE
Sbjct: 4   LLVDDDPAILEVLGAFLRGAGFEV--LEAEDGEKALELFPQADLVILDLMLPKVG--GLE 59

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R+IR    ++PL+ ++     +  +   + G DD V KP   RE++ARV A+ RR  +
Sbjct: 60  VARLIRQERPELPLLILTAKGEEEDRVLGLELGADDYVVKPFSPREVVARVKALLRRAGL 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP+R+    R+  + G+  PL R E  +L  L  + G   ++ ++   ++G  
Sbjct: 120 -REELVYGPLRLLPTRREAYLAGKPLPLSRLEFDLLLTLAQHPGVVFSRERLLERVWGPG 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              V+  VV+ HI+ LRKKL +       +++ R +GY  
Sbjct: 179 FPGVD-RVVDVHIAALRKKLGDDPENPRFIETVRGVGYRF 217


>gi|329946264|ref|ZP_08293858.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328527556|gb|EGF54551.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 254

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSARE------DVSAIEAFLI 54
            +L++D    +D        DG  + E  +     E  ++S R       D+  ++  L 
Sbjct: 21  ILLVEDEENFRDPLAFSLRRDGFEVIEAEDGQRAVEIFETSRRPGGVGPIDLVLLDLMLP 80

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                  E+   IR  S VP+I +S   +    +   + G DD V KP  +RE+LAR+ A
Sbjct: 81  R--LDGTEVCTRIRRSSSVPVIMLSAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 138

Query: 115 IYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + RR +V  +  E     G +R+  +  +  V GE   +P RE  +LE  + + G+ + +
Sbjct: 139 VLRRSRVVPDEPEQVLAAGRVRMDVERHEVLVDGEAVAMPLREFELLELFLRHPGRVLTR 198

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            QI   ++G  D   +   ++ H+ +LR ++  +      + + R LGY +D
Sbjct: 199 GQIIERLWGP-DYEGDTKTLDVHVKRLRGRIEADASKPVLITTVRGLGYRLD 249


>gi|228941716|ref|ZP_04104263.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974641|ref|ZP_04135207.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981236|ref|ZP_04141536.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis Bt407]
 gi|228778436|gb|EEM26703.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis Bt407]
 gi|228785044|gb|EEM33057.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817928|gb|EEM64006.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326942322|gb|AEA18218.1| two-component response regulator ycbL [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 230

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   +  E           D+  ++  +       L
Sbjct: 5   ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ RIIR  S VP++ +S   +          G DD + KP    E+ ARV A  RR   
Sbjct: 63  EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    + G + +       E   +   L  +E  IL+  + N+ +   K QI++
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNRKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +   ++NV+  H+ +LR+K+  +    + + +   +GY ++ 
Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229


>gi|283853868|ref|ZP_06371084.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283570743|gb|EFC18787.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 251

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    I      G +++          L ++    V+ I+  L   G   L
Sbjct: 31  ILLVEDDEKIASFIIGGLRQSGFAVDHAADGLDGLHLATTEPYAVAVIDVMLP--GMDGL 88

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R      P+I +S   S++  +   ++G DD ++KP    E+LARV A+ RR  
Sbjct: 89  KVIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRRST 148

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++   R   G + +    RD         L  RE  +LEY M N GK ++KT I   ++
Sbjct: 149 SASEPTRLSVGELSMNLLTRDVHRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 208

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + N+V+  + +LR K+        + + R +GY +
Sbjct: 209 D-YHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVL 249


>gi|254421256|ref|ZP_05034974.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188745|gb|EDX83709.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +        G +G  +   N           +  D+  ++  +   G   +
Sbjct: 8   ILIVEDEEKLAKFVQLELGYEGYEVIVANDGLSGLMAARDSEPDLVLLDWMMP--GLTGV 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA   + P+I ++    ++  +   D+G DD V KP    E+LARV A  RR +
Sbjct: 66  EVCRRLRATGAMMPVILLTAKDGIEDRVAGLDAGADDYVVKPFSIEELLARVRAHLRRNQ 125

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +  +     + +    R+      +  L  +E  +L+YL+++  + + + +I   ++G
Sbjct: 126 PEDPESFLFADLSLNRKTREVRRGDRLIELTAKEFDLLDYLISHPKQVLTRDRILEEVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL  +     + + R +GY +
Sbjct: 186 -YDFMGDSNIIEVYIRYLRLKLEAENESRLIQTVRGVGYVM 225


>gi|16803987|ref|NP_465472.1| hypothetical protein lmo1948 [Listeria monocytogenes EGD-e]
 gi|47097091|ref|ZP_00234661.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
           1/2a F6854]
 gi|217963900|ref|YP_002349578.1| ResD family transcriptional regulator [Listeria monocytogenes
           HCC23]
 gi|224498602|ref|ZP_03666951.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           Finland 1988]
 gi|224501252|ref|ZP_03669559.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           R2-561]
 gi|254831451|ref|ZP_05236106.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           10403S]
 gi|254899355|ref|ZP_05259279.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           J0161]
 gi|254912506|ref|ZP_05262518.1| resD [Listeria monocytogenes J2818]
 gi|254936833|ref|ZP_05268530.1| resD [Listeria monocytogenes F6900]
 gi|255026084|ref|ZP_05298070.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           J2-003]
 gi|284802393|ref|YP_003414258.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
 gi|284995535|ref|YP_003417303.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
 gi|290892108|ref|ZP_06555104.1| resD protein [Listeria monocytogenes FSL J2-071]
 gi|16411401|emb|CAD00026.1| resD [Listeria monocytogenes EGD-e]
 gi|47014536|gb|EAL05499.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
           1/2a F6854]
 gi|217333170|gb|ACK38964.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           HCC23]
 gi|258609429|gb|EEW22037.1| resD [Listeria monocytogenes F6900]
 gi|284057955|gb|ADB68896.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
 gi|284061002|gb|ADB71941.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
 gi|290558231|gb|EFD91749.1| resD protein [Listeria monocytogenes FSL J2-071]
 gi|293590491|gb|EFF98825.1| resD [Listeria monocytogenes J2818]
 gi|307571530|emb|CAR84709.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 238

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 96/231 (41%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++  +   G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMP--GKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R     P++ ++        +  F+ G DD + KP   RE++ RV A+ RR K S
Sbjct: 66  VCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125

Query: 123 NNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +                +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235


>gi|289434076|ref|YP_003463948.1| DNA-binding two-component response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170320|emb|CBH26860.1| DNA-binding two-component response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313634218|gb|EFS00857.1| heme response regulator HssR [Listeria seeligeri FSL N1-067]
 gi|313638846|gb|EFS03909.1| heme response regulator HssR [Listeria seeligeri FSL S4-171]
          Length = 225

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G ++      E  E + +S +  ++ I+  +        
Sbjct: 4   ILVVDDDKHIRQLVGHYLRREGFAVLEAMDGEAAEQIVTSQQVHLAVIDLMMP--KMDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR ++ ++P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR  
Sbjct: 62  ELCQKIRTSYPEIPVIMLTAKDALIDKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRST 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  + + G + +       ++      +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKIKIGQLTIDQKSYGIKIGNRELMIPVKEFELLYQLASYPGRIFTREELIERIWK 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D    +  ++ HI +LR     +     + + R +GY ++
Sbjct: 182 R-DYDGSDRTIDVHIKRLRDHFDEEKAGIRITTVRGVGYKLE 222


>gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R]
 gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 255

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G ++           +    +  +  ++  +       L
Sbjct: 26  ILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPR--MDGL 83

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LARV ++ RR  
Sbjct: 84  EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 143

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V +N+           G + +  + RD    G    L R E  +L+ L+ N+ K + + Q
Sbjct: 144 VESNQSSNIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 203

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G +D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 204 ILEEVWG-YDFPTSGNALEVYIGYLRRKTELEGEDRLIHTVRGVGYVL 250


>gi|53802727|ref|YP_115492.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
           Bath]
 gi|53756488|gb|AAU90779.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
           Bath]
          Length = 232

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++    +      +++    ++           D+  ++  L   G   +E
Sbjct: 7   LVVEDEEAIREMLTLVLEQADFAVQTAGDVQQALNRMDEQEPDLILLDWMLP--GVSGVE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             R ++    +  +PLI ++     +  +   D G DD V KP   RE++AR+ A+ RR 
Sbjct: 65  WARRLKKDENYGDIPLILVTARGEEEDKIRGLDVGADDYVTKPFSPRELIARIRAVLRRS 124

Query: 120 KVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + R E G I + +D     +  E   L   E R++E+ + +  K  ++ Q+   
Sbjct: 125 NRQSKLDGRIEIGGILLDTDEHRLSIDDESVNLSPTEYRLMEFFLTHPSKVYSRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     +EE  V+ HI +LRK L      D + + R  GY  
Sbjct: 185 VWGRSAY-IEERTVDVHIRRLRKILSEHDREDMIQTVRGFGYRF 227


>gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum]
 gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
          Length = 232

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G ++           +    +  +  ++  +   G   L
Sbjct: 3   ILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMP--GMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++   ++   +   D+G DD + KP    E+LARV ++ RR  
Sbjct: 61  EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 120

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V +N+           G + +  + RD    G    L R E  +L+ L+ N+ K + + Q
Sbjct: 121 VESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G  D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 181 ILEEVWGC-DFPTSGNALEVYIGYLRRKTELEGEDRLIHTVRGVGYVL 227


>gi|88703693|ref|ZP_01101409.1| Response regulator receiver domain [Congregibacter litoralis KT71]
 gi|88702407|gb|EAQ99510.1| Response regulator receiver domain [Congregibacter litoralis KT71]
          Length = 258

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 95/234 (40%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +    D  ++ +  +  + ++ LQ +       I   L   G   L
Sbjct: 24  ILVVEDDEDIARLIVMHLED--LNADLLHCDQGDKALQLALSNAWDLIVLDLRLPGMGGL 81

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R    + P++ ++   S    +   + G DD ++KP    E+ AR  A+ RR +
Sbjct: 82  DICRQLRERGNITPILMLTAKSSELDRVLGLELGADDYLSKPFSPLELTARAKALLRRTR 141

Query: 121 -------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                         +    + GP  +        + G+   L  RE  +L +     G+ 
Sbjct: 142 MNRHQENAELEQNGAAEPLKLGPFCICDRTHRVTMHGDRIELTSREFDLLLHFARQPGRV 201

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++++   ++G +     E+ V +HI++LR K+  +      V++   +GY  
Sbjct: 202 FRRSELLDEVWG-YGHDGYEHTVNTHINRLRGKIETDPGNPQYVNTVWGVGYRF 254


>gi|46908182|ref|YP_014571.1| DNA-binding response regulator ResD [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093377|ref|ZP_00231144.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
           H7858]
 gi|226224553|ref|YP_002758660.1| two-component response regulator (ResD) [Listeria monocytogenes
           Clip81459]
 gi|254825556|ref|ZP_05230557.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           J1-194]
 gi|254852850|ref|ZP_05242198.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           R2-503]
 gi|254931880|ref|ZP_05265239.1| DNA-binding response regulator ResD [Listeria monocytogenes
           HPB2262]
 gi|254992998|ref|ZP_05275188.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
           J2-064]
 gi|255520089|ref|ZP_05387326.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
           J1-175]
 gi|300763740|ref|ZP_07073737.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           N1-017]
 gi|46881452|gb|AAT04748.1| DNA-binding response regulator ResD [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018248|gb|EAL09014.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
           H7858]
 gi|225877015|emb|CAS05724.1| Putative two-component response regulator (ResD) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606183|gb|EEW18791.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           R2-503]
 gi|293583431|gb|EFF95463.1| DNA-binding response regulator ResD [Listeria monocytogenes
           HPB2262]
 gi|293594797|gb|EFG02558.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           J1-194]
 gi|300515476|gb|EFK42526.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           N1-017]
 gi|328466296|gb|EGF37453.1| two-component response regulator (ResD) [Listeria monocytogenes
           1816]
 gi|328472790|gb|EGF43639.1| two-component response regulator (ResD) [Listeria monocytogenes
           220]
 gi|332312389|gb|EGJ25484.1| Transcriptional regulatory protein resD [Listeria monocytogenes
           str. Scott A]
          Length = 238

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 97/231 (41%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++  +   G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMP--GKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R     P++ ++        +  F+ G DD + KP   RE++ RV A+ RR K S
Sbjct: 66  VCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125

Query: 123 NNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +                +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLARSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +  +     + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235


>gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104]
 gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22]
 gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG]
 gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis]
 gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104]
 gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22]
 gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG]
 gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137]
 gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017]
 gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027]
 gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141]
 gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244]
 gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012]
 gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031]
 gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043]
 gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312]
 gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645]
 gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302]
 gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341]
 gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342]
 gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346]
 gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B]
 gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630]
 gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A]
 gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62]
 gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 229

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++G  + + ++  E    L ++   D+  ++  +       
Sbjct: 3   ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPI--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV +I RR +
Sbjct: 61  MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       +  E GP+ +  D  +   ++G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|289450138|ref|YP_003475554.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184685|gb|ADC91110.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 236

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   V D        +G  +   F+ +       S  + D+  ++  L       
Sbjct: 5   ILVVDDEINVVDLLKDNLEREGYHVITAFDGVTAYNSALSD-KPDLILLDCMLPR--MNG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + IR  S VP+I I+        +   + G DD + KP   RE+LARV A  RR+ 
Sbjct: 62  VDVCKKIRQSSSVPIIMITAKSEEVDKVIGLELGADDYITKPFSVREVLARVKATLRRMG 121

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +          E G   +     +    G V  L  RE  ++ +L  + G+   + Q+
Sbjct: 122 FVDQEQAIISSTIEFGEFIIDLRSFELRRNGCVINLTLREFELISFLAQHPGEVFTREQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
              ++G ++   +   V+  + + R+K+       +  + ++R +GY  +
Sbjct: 182 LERVWG-YEYYGDVRTVDVTVRRTREKIEGDTQNNYKYILTRRGVGYYFE 230


>gi|206972806|ref|ZP_03233728.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|229193839|ref|ZP_04320763.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
 gi|206731690|gb|EDZ48890.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|228589616|gb|EEK47511.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
          Length = 231

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEKV 60
           ++++D   + D       ++  ++  F     +E L+   +   D++ ++  L       
Sbjct: 6   LIVEDEREIADLVELYLKNENYTV--FKYYTAKEALECIDKNVLDLAILDIMLPDV--SG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K
Sbjct: 62  LTICQKIRDKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYK 121

Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N       N      + +     +  +  +   L   E  IL  L  N+G  V+  Q+
Sbjct: 122 KYNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           F  I+G    +   N +  HI  LR+K+ + +     + +   +GY I+
Sbjct: 182 FHEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIE 230


>gi|148654964|ref|YP_001275169.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567074|gb|ABQ89219.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A ++    A     G  +   ++      L    R D+  ++  L   G   +
Sbjct: 5   ILIIEDEASIRTVARAYLEQAGFRVLLADNGPEGVELARRERPDLVILDLNLP--GMDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S V +I ++        +     G DD V KP   RE++AR+ AI RR + 
Sbjct: 63  EVAARLRQESDVFIIMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARIEAILRRRRS 122

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++   +       +R+  + R+  V  +   L   E  +L  L    G+ +++ QI   +
Sbjct: 123 ASPVIDATLRFAHLRIDPERREVYVGDQAIDLTTTEFDVLLALARRHGRVLSREQILDLV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +    + VV+ ++ ++R+KL    G   + + R +GY  
Sbjct: 183 WG-DNFYGTDRVVDVYVGQVRRKLEAVAGVPLIQTVRGVGYKF 224


>gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum
           ATCC 13032]
 gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032]
 gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032]
          Length = 226

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G   +     +    +++++RE    I   L+  G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLSAEGF--DTVAVTDGALAVETASREQPDLILLDLMLPGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           ++ R+IR  S VP+I ++        +   +SG DD VNKP   +E++AR+ A  R    
Sbjct: 63  DICRLIRQESSVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATVD 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E G + +       +  G    L   E  +L  L     +   + ++   ++G 
Sbjct: 123 EPSEIIEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +  A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221


>gi|329902856|ref|ZP_08273276.1| two component heavy metal response transcriptional regulator,
           winged helix family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548595|gb|EGF33254.1| two component heavy metal response transcriptional regulator,
           winged helix family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 227

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       ++G +++   +      L  +A  D+  ++  L        
Sbjct: 3   LLVVEDETKIADYLRQGLTEEGFAVDLARNGLDGHHLAMTAPYDLIILDVMLPDV--DGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A   VP++ ++   S+   +   + G DD + KP    E+LARV    RR  
Sbjct: 61  RILQSLRDAGKNVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTQLRRGS 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +R +   + +    R     G+   L  +E  +LE L  ++G+ +++  I S ++
Sbjct: 121 PAINADRFQIANLELDYLCRRATRSGQRINLTAKEFALLELLARHQGEVLSRALIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY +D
Sbjct: 181 DI-NFDSDTNVIDVAIRRLRAKMDDDFEPKLIHTVRGMGYRLD 222


>gi|295425495|ref|ZP_06818188.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064834|gb|EFG55749.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 242

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 109/239 (45%), Gaps = 25/239 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   V +     F  +G    V+++G  ++E   + + ++  D+  ++  L  K 
Sbjct: 5   ILMVEDDTSVAEMMEMFFKKEGWQQDVAVDGVQAVEM--FKEHASEYDLITLDLNLPKK- 61

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +++ + +R  S  VP+I ++   S    +     G DD V+KP     ++AR+ A++
Sbjct: 62  -DGIQVAKEVRQISPTVPIIMLTARGSEADQVLGLGVGADDYVSKPFSPISLIARIKALH 120

Query: 117 RRLKVSNNR-------------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMA 162
           RR+ +                  +T  +++    R+    G+    L  +E  +L  +  
Sbjct: 121 RRVMMDEPTNNAVNKQVNNDYDIQTQHLKISKSRREVLFDGKSVTTLTPKEFDLLFTMAQ 180

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +  ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 181 KPKQVFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGPQVIQTVWGVGYKFD 237


>gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC
           12478]
          Length = 228

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       + +S R D   ++  +       L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALDMIASDRPDALVLDVMMPR--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 121 PDDTAESVAMRFSDLSLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223


>gi|297200653|ref|ZP_06918050.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197709788|gb|EDY53822.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E            ++ R D+  ++  +       L
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALDKATAYRPDLVVLDIQMPR--MDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IR A    P++ ++   ++   +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 71  TAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 130

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                       +       +R+    R+    G    L R E  +LE  MA+  + + +
Sbjct: 131 YAAAAGAAAADDDEALTFADLRMDLATREVTRAGRPVELTRTEFTLLEMFMAHPRQVLTR 190

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 EQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239


>gi|56962305|ref|YP_174030.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908542|dbj|BAD63069.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 227

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D       +D    L   N+ E  E  Q SA   V  +   ++  GE  
Sbjct: 6   ILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSA---VDCLILDIMMPGENG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R IRA S VP++ +S   +    +     G DD + K     EI+ARV A+ RR  
Sbjct: 63  FAFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSA 122

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +    E G + +    R+  V G+   L  +E  +L+  + +     +  Q+   
Sbjct: 123 SNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++   D   +++ V  H+S+LR+K+  N      + +   +GY  +
Sbjct: 183 LW---DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFE 225


>gi|331653384|ref|ZP_08354389.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
 gi|331049482|gb|EGI21554.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
          Length = 260

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLITTIRGMGYSF 255


>gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 220

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      +S   D+  ++  L  +    L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216


>gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
 gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
          Length = 232

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +    + +  E +++   E+   +   ++      L
Sbjct: 3   ILVVDDEQAVRESLRRSLRFNGYEV--LTANDGLEAVETVRAENPELLILDVMMPNMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++    +   +   D+G DD + KP    E+LARV ++ RR  
Sbjct: 61  EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120

Query: 121 VSN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +        ++     + + +D R+    G    L R E  +L+ LM N  K +++++
Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G +D     N +E +I  LRKK   +     + + R +GY +
Sbjct: 181 ILEEVWG-YDFPTSGNALEVYIGYLRKKTEGESDARLIHTVRGVGYVL 227


>gi|302876970|ref|YP_003845603.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687661|ref|ZP_07630107.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579827|gb|ADL53839.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 225

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G     G +G ++   +S+   +      + D+   +  L        
Sbjct: 3   ILLVEDDKTIAAGLEYSLGQEGYTVIMCHSVAAGKEAIEEIQLDLCLFDLSLPD--GSGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL ++ RA S +P+I ++        +   D G DD + KP   +E+++R+ ++ RR   
Sbjct: 61  ELCKMARAKSDMPIIFLTACDDEVNVVMGLDMGADDYITKPFRIKELISRIKSVLRRCNK 120

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N   N  E G I + +       +     L   E R+L     N G+ ++++Q+   I+
Sbjct: 121 ENNLKNIFEIGDICINTLDAKVYKKNIEISLTALEYRLLLVFANNIGQVLSRSQLLEGIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +  + V +N +  +I ++R+KL +       + + R +GY I
Sbjct: 181 DVAGDFVNDNTLTVYIKRIREKLEDDPQNPRIIKTVRGMGYRI 223


>gi|206891042|ref|YP_002248007.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742980|gb|ACI22037.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 229

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +   +      E           D+  ++  L   G + L
Sbjct: 5   ILIVEDEKEIAELIAYSLKKEKYDISIALDGETALKKLRETVYDLVILDLMLP--GIQGL 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ +IIR +S      +I ++        +   ++G DD + KP   RE++ARV A+ RR
Sbjct: 63  EICKIIRNNSNMQKTGIIIVTAKSEEFDKITGLETGADDYITKPFSPRELIARVKAVMRR 122

Query: 119 LKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +   N   +   + +  +     V+G+   L   E ++L YL     K  ++  +  
Sbjct: 123 TLPAVSNNQIIKIKDLIIDKEKYLVTVKGQPKRLSATEFKLLLYLAERPNKIFSRDHLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           A++G  D  V+   V+ HI +LR K+ +     + + + R +GY I+
Sbjct: 183 AVWGQ-DIYVDPRTVDVHIRRLRLKIEDYPDNPEYIKTLRGIGYYIE 228


>gi|104773345|ref|YP_618325.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422426|emb|CAI96975.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|325124950|gb|ADY84280.1| Putative response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 242

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 99/233 (42%), Gaps = 19/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +E   + + EE ++     +   +   L+   +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLIKEGFDVE--TAYDGEEAVEKVEEYNPDLLILDLMLPKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++        +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 120 -------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                        +  +N  + G + +  D    E  GE   L  RE  +L Y+  +  +
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
            + +  +   ++G +D   +   V+  + +LR+K+ +      +  ++R +GY
Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234


>gi|314933599|ref|ZP_07840964.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
 gi|313653749|gb|EFS17506.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
          Length = 219

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 91/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++             +   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPN--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR + 
Sbjct: 62  KICRQIRQEQSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  +   I +  D     V G    L + E  +L  L  NR   + + QI   ++G F
Sbjct: 121 QKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-F 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218


>gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  ++   +++ ++ L   A     A+   L       L
Sbjct: 3   ILVVDDDRAVRESLRRSLTFNGYQVD--TAVDGQDALDHIASNRPDALVLDLNMPRLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R +R A   +P++ ++    +   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLRRAV 120

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N       + +    R+         L R E  +LE LM N  + + +++I   
Sbjct: 121 PDTASDNEVLRFEDLTLDPATREVSRGDRSISLTRTEFSLLEMLMGNPRRVLTRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223


>gi|168177980|ref|ZP_02612644.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226947863|ref|YP_002802954.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182671519|gb|EDT83493.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226844534|gb|ACO87200.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++  F +   EE L+   RE+V+ +   ++      L
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNV--FKASCGEEALEILEREEVNLMVLDIMMPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ +  R    +P++ +S        ++   +G DD V KP +H E+  R+ A+ RR   
Sbjct: 63  EVCKRAREKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYF 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++S+N      + +        +      L  RE  IL  L  NRG   +  +IF
Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++         N V  H+S+LR K+   + G   + +   +GY I+
Sbjct: 183 EKVWKER-YYQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIE 229


>gi|86138909|ref|ZP_01057481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. MED193]
 gi|85824556|gb|EAQ44759.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. MED193]
          Length = 229

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++        DG  +    + E    L      D+  ++  +       +E
Sbjct: 9   LIIEDELAQREVLAYNLEADGFRVIRAENGEEGLLLVEEDMPDIIVLDWMMPN--LSGIE 66

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++   +   +P+I +S        +   ++G DD V KP    E++ARV    RR+
Sbjct: 67  VCRRLKTRPETRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRV 126

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + S    R E   I + ++            L   E R+L   M   G+  ++ Q+   +
Sbjct: 127 RPSTVGMRLEFDDIILDAETHKVSRSDNSLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   V+ HI +LRK L    G DPV + R  GY++
Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALTQFGGADPVRTVRGAGYAL 228


>gi|331268468|ref|YP_004394960.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
 gi|329125018|gb|AEB74963.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
          Length = 247

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 105/233 (45%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++D       ++G S++  ++ E    +  ++  D+  ++  L   G    
Sbjct: 17  ILIIEDEENIRDILNYSLNNEGYSIKEASTGEEGIKIIENSNIDLIILDLMLP--GISGY 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R I  + ++P+I ++    +   +   + G DD + KP   RE++AR+    RR+K 
Sbjct: 75  DVCREINPNYKIPIIMLTAKNDIVDKVIGLELGADDYITKPFDIREVIARIKVCLRRIKE 134

Query: 122 -------------SNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                        S N  +    I++F D R+     E+  L  +E  +L +L  N+   
Sbjct: 135 LDKQYYEDKNGEDSQNIMKIDENIKIFIDSREIFKDEEIINLKPKEYDLLYFLARNKNIV 194

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ Q+   I+G +D   +   V+ H+ ++RKKL        + +   +GY +
Sbjct: 195 FSREQLLDDIWG-YDFLGDSRTVDVHVQRIRKKLGVTGKNSIIKTVFGVGYKM 246


>gi|311070610|ref|YP_003975533.1| YvrH protein [Bacillus atrophaeus 1942]
 gi|310871127|gb|ADP34602.1| YvrH [Bacillus atrophaeus 1942]
          Length = 236

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   +      +   +G+     +S   + + Q    + D+  ++  L     +  
Sbjct: 9   LIIDDEQEILALIKTVLVKEGIENVITSSTAKDGFTQFQQKQPDIVLLDIMLPD--GEGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR  S VP+I +S        +     G DD + KP   +E+  RV A  RR   
Sbjct: 67  DVCKQIRELSNVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRANY 126

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +++N  + GP ++     +    GE   L  +E ++++Y + N    ++K  +++
Sbjct: 127 SQSKGIADNIIKVGPFQLSERKAELTKNGEPVELKPKELKLMKYFLQNPNMVISKETLYN 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           A++G  D    +N +  HI +LR+K+  K    D + + + LGY  
Sbjct: 187 AVWGE-DSFGFDNTIMVHIRRLREKIETKPSKPDYLVTVKGLGYKF 231


>gi|297158456|gb|ADI08168.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 247

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G   E   +L+  + L+     D   I   ++      L
Sbjct: 13  ILIVDDEPAVREALQRSLAFEGYLTE--TALDGLDALEKVGAYDPELIVLDVLMPRMDGL 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA    VP++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 71  TAARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSS 130

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                        +      +R+    R+    G    L R E  +LE  +A+  + + +
Sbjct: 131 YAAAAGAVAETGADELTFADLRMNLATREVNRGGRRVELTRTEFTLLEMFLAHPRQVLTR 190

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 EQILKAVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239


>gi|228995640|ref|ZP_04155304.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
 gi|228764114|gb|EEM12997.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
          Length = 237

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 93/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +  +++   + E    L +  + ++  ++  +       +E
Sbjct: 7   LIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKV--DGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R  + +P++ ++        +     G DD + KP    E++AR+ A+ RR    
Sbjct: 65  VCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFLVL 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  +     V G+   L  +E  +L++  +N  +   KTQ+F
Sbjct: 125 GSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTIWGIGYKF 230


>gi|291439275|ref|ZP_06578665.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342170|gb|EFE69126.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 229

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 10  LVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLP--GRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|226954429|ref|ZP_03824893.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|294651444|ref|ZP_06728758.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226834778|gb|EEH67161.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|292822690|gb|EFF81579.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 230

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +  F+  +         +  +  ++  +       L
Sbjct: 7   IMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMVPR--MDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        +   + G DD + KP   +E++ARV A+ RRL+ 
Sbjct: 65  TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLER 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I    
Sbjct: 125 KAEPEQNDLFRIDKAQQRIWYQQKALTLTPTEFRLLELFLEHLGQVYSRAQLLDHI-NPD 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
              V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 184 SFDVADRVIDSHIKNLRRKISEAADTGNRHEWIQAVYGVGYRFEY 228


>gi|145294917|ref|YP_001137738.1| hypothetical protein cgR_0863 [Corynebacterium glutamicum R]
 gi|140844837|dbj|BAF53836.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 226

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G   +     +    +++++RE    I   L+  G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLSAEGF--DTVAVTDGALAVETASREQPDLILLDLMLPGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           ++ R+IR  S VP+I ++        +   +SG DD VNKP   +E++AR+ A  R    
Sbjct: 63  DICRLIRQESSVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATVD 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E G + +       +  G    L   E  +L  L     +   + ++   ++G 
Sbjct: 123 EPSEILEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +  A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221


>gi|229160526|ref|ZP_04288521.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
 gi|228622936|gb|EEK79767.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
          Length = 238

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  +++  ++ +    +      D+  ++  +   G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEMALQNDYDLILLDLMMP--GKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235


>gi|18310175|ref|NP_562109.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110800369|ref|YP_695848.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168205438|ref|ZP_02631443.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209683|ref|ZP_02635308.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213127|ref|ZP_02638752.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168217845|ref|ZP_02643470.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169346754|ref|ZP_02865707.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|18144854|dbj|BAB80899.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110675016|gb|ABG84003.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169297106|gb|EDS79227.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170663026|gb|EDT15709.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712265|gb|EDT24447.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170715454|gb|EDT27636.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|182380100|gb|EDT77579.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 225

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +++        +G ++  F ++   E L    +E +      ++  G    
Sbjct: 3   ILIAEDEQDIRNLLELHLLKEGYTV--FKAVNGLEALDILKKEHIHLALLDVMMDGIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L +++R  SQ+P+I ++        +     G DD V KP    E++AR+ +  RR   
Sbjct: 61  NLLKMLREWSQIPVIFLTAKIEDDDKILGLGLGADDYVIKPFKPVELMARIKSNLRRCYK 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N   + G + +  +G   +  GE+  L  +E +ILE LM+N G+   K QI+  ++
Sbjct: 121 YSGENELIKIGNLELSKEGCTVKKDGEIVTLNAKEFKILEMLMSNIGRVFTKKQIYENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              +   ++N +  HIS LR K+         + + R +GY  +
Sbjct: 181 -QEEYLGDDNTIMVHISHLRDKIEEDPKNPCKIKTIRGIGYRFE 223


>gi|330980166|gb|EGH78348.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 225

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +RA  +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL   + F P+++ R +GY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDGSVAFKPIETVRGMGYLFN 221


>gi|320658631|gb|EFX26325.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 260

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|229160061|ref|ZP_04288063.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623372|gb|EEK80196.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 226

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  S E      S A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIP--GIDGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +         V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDRVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
 gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
          Length = 237

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L +  + ++  ++  +       +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMP--KIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  + +P++ ++        +     G DD + KP    E++ARV A+ RR   
Sbjct: 64  EVCKKLRDKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTVQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|297583440|ref|YP_003699220.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141897|gb|ADH98654.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 97/231 (41%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++    +  ++G  +    + +  E +Q      +  +   ++       E
Sbjct: 9   LIVDDEEQMREMIRNILTNEGYHV--LEAADGFEAIQRIEYHKIHFVILDVMMPKLDGYE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
              I+R  S +P++ ++        +D   +G DD + KP    E+LAR+ AI RR    
Sbjct: 67  TLDILRKQSGLPVLMLTAKSEESDKVDGLRAGADDYLTKPFGRNELLARMEAILRRSDAY 126

Query: 123 NNRAETGP------------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N  +               I + +  +   V      L ++E  +LE  + +  +  ++
Sbjct: 127 PNIGQAQTSSSDDGQYSFDIITLNTRSKKVTVNKNPVSLTKKEFEMLELFIRHPEQVFSR 186

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            Q+  AI+G+   +     V++H+  LR KLR+      + +   +GY ++
Sbjct: 187 EQLLEAIWGMDYLSASSRTVDTHVKTLRLKLRDASAH--IQTVWGIGYKLE 235


>gi|153854307|ref|ZP_01995606.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814]
 gi|149753082|gb|EDM63013.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814]
          Length = 242

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 105/225 (46%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +++        +  S++   + LE  +++  ++ + +  ++  L   G+  
Sbjct: 21  LLIVEDENDLRNIVKKRLVKEHYSVDACGDGLEAMDYIDMTSYDGI-ILDIMLP--GKDG 77

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
            E+ R +R      P++ ++   S++  +   D G DD + KP    E+LAR+  + RR 
Sbjct: 78  YEILRELRRREDDTPVLLLTAKDSIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRK 137

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++N+ +   + +  D R     G    L  +E  +LE LM N+   + + QI    +
Sbjct: 138 PQFTSNQLKIADLILDRDTRKVTRAGNEIDLSAKEFMVLECLMRNKNIVMTRQQIEQNAW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             FD     NV++ +I  LRKK+  +     + + R +GY +  N
Sbjct: 198 D-FDFEGGSNVIDVYIRYLRKKIDAQYEQKLIHTVRGVGYVMREN 241


>gi|296117440|ref|ZP_06836028.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295976042|gb|EFG82832.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 226

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V++       + G   E  ++ +   +L  S + D+  ++  L G G   L
Sbjct: 3   ILVVEDDPTVRNFVAKGLREAGHLTELTDNGKDGLFLAVSEKFDLIILDRMLPG-GIDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L   IRA +   P++ +S    +   +    +G DD V KP    E+LARV A+ RR  
Sbjct: 62  RLLETIRAQNNATPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRGR 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    +     + +    R     G+   L  RE R+LEYL  + G+ V +T +   +
Sbjct: 122 TEQAPQTKLVVADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEGV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H+S+LR+K+    G   + + R  GY +
Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFGMPLIHTIRNAGYML 223


>gi|317128715|ref|YP_004094997.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473663|gb|ADU30266.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 234

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   V +        +   +   N+ +    L  S++ D+  ++  +        E
Sbjct: 7   LVADDDPNVCEIISLYLKQNQYDVVEANNGKEAISLFESSKPDIILLDIMMPD--IDGYE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + IR  + VP+I ++        +   + G DD V KP   RE++AR+ AI+RR+   
Sbjct: 65  VCKEIRKKANVPIIMLTAKDEELDRVLGLEIGADDYVTKPFSPREVVARIKAIFRRMPAL 124

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N         +  D R+    GE      +E  +L YL+ N      + Q+ 
Sbjct: 125 TNNTNTNENKDFTFSSFSILVDQREVIAHGEKLFFRPKEFDLLLYLVQNPQIVFTREQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             ++G FD A +   V+ HI ++R +   K     + +   +GY    N
Sbjct: 185 QKVWG-FDFAGDVRTVDVHIKRIRDEF-AKHQILCIHTVWGVGYQFHIN 231


>gi|78224573|ref|YP_386320.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78195828|gb|ABB33595.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 224

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++   +E   +   E+ L+ +  +    I   ++   +  L
Sbjct: 3   ILVVEDEKKVSSFIKRGLEEERYEVEA--AFNGEDGLKMALEKGFDLIILDVMLPKKDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR +
Sbjct: 61  SVVRELRERKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSE 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      +R+         + +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 QDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+  +     + + R +GY +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDREADKKLIHTVRGVGYIL 220


>gi|309807854|ref|ZP_07701786.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 01V1-a]
 gi|308168956|gb|EFO71042.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 01V1-a]
          Length = 244

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L  K    L
Sbjct: 15  ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKK--DGL 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    + +I ++   +    +   + G DD V KP  +RE++ARV A  RR ++
Sbjct: 73  EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 132

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       N     G + +  +    E  G    L  RE  +L YL  + G+ + +  + 
Sbjct: 133 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +      +  ++R +GY +
Sbjct: 193 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYV 238


>gi|323341542|ref|ZP_08081780.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091026|gb|EFZ33660.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 229

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G  +E  +N  E    L ++    +  ++  +       
Sbjct: 3   ILIVDDDKDIVELLSIYVKNEGYEVERAYNGKEAITKLNTNPDIGLMILDIMMPQ--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  SQ+P++ +S        +     G DD V KP +  E++ARV ++ RR +
Sbjct: 61  LAVVREVRKDSQIPVLMLSAKTDDLDKIQGLIQGADDYVTKPFNPLEVMARVKSLLRRSQ 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   ++ E GP+ +  D  +   V G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 HDVKNDEPDQIEIGPLIIKKDSHEVETVTGKSIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY I+
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEESTGGEKVIQTVWGVGYKIE 227


>gi|110800218|ref|YP_696604.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168204892|ref|ZP_02630897.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168208625|ref|ZP_02634250.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168214155|ref|ZP_02639780.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215550|ref|ZP_02641175.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182624373|ref|ZP_02952157.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674865|gb|ABG83852.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170663696|gb|EDT16379.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170713053|gb|EDT25235.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714338|gb|EDT26520.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177910376|gb|EDT72753.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182382004|gb|EDT79483.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 223

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 13/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEK 59
           ++++D   ++         D    EGFN LE    EE L+  +   V      ++     
Sbjct: 6   LIVEDEIRIR-----FLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L + R IR  S  P+I ++     +  L  ++ G DD + KP   + +LA+  A+ RR 
Sbjct: 61  GLAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT 120

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N  N  +   + +     + ++ GE   L  +E  +L YL +N G  +++ +I   +
Sbjct: 121 GTLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   +   V+++I +LR+KL +K   + + + R  GY  + 
Sbjct: 181 WG-YDYFGDIRTVDTNIKRLREKLLDK--ANYIATVRGSGYKFEV 222


>gi|329726494|gb|EGG62957.1| heme response regulator HssR [Staphylococcus epidermidis VCU144]
          Length = 224

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 6/226 (2%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +++DD   +     +    + +    F S E       +   D++ ++  +   G 
Sbjct: 1   MINCLIVDDDKKLLQYVSSHLERESIQTHTFTSGEASLDFLENKNVDIAIVDIMM--SGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              EL + ++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR
Sbjct: 59  DGFELCQTLKDDYHIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRR 118

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ ++N  + G + +     +  V  +   LP +E ++L  L +N      +  I   I
Sbjct: 119 YQINADNELQLGNLILNQSYMEITVGSKTMNLPNKEFQLLFLLASNPKHIFTRDYIIEKI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   ++  V+ HI +LR++L        + + R  GY +D N
Sbjct: 179 WG-FDYEGDDRTVDVHIKRLRQRLSKLKSSISIQTVRGQGYRVDQN 223


>gi|239928972|ref|ZP_04685925.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437309|ref|ZP_06576699.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340204|gb|EFE67160.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 246

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 23  LVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDVMLP--GFDGLE 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 81  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMERA 140

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 141 ALAATTPRNGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
 gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
          Length = 232

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAVHIIEAQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  S +  E G + +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|114567196|ref|YP_754350.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338131|gb|ABI68979.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 227

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + +L++D   ++D        +G  +    + LE  +  Q   + D+  ++  L   G  
Sbjct: 4   LILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDI-KPDLIVLDLMLP--GLS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E+ + IR  +  P+I ++        L   + G DD + KP   RE+  R+ A+ RR 
Sbjct: 61  GWEVMKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRS 120

Query: 120 KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +            + +  +  +  +   +  L   E +IL  L  N G+  ++  I   +
Sbjct: 121 RPHEQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +G       E  +++HIS LR K+      +  + +   +GY +
Sbjct: 181 FGDI-YEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKL 223


>gi|320324367|gb|EFW80446.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328510|gb|EFW84512.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 227

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLP--GRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 68  DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTSS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++       ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 128 TDPH-TPKVLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|229018448|ref|ZP_04175310.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229024704|ref|ZP_04181143.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228736547|gb|EEL87103.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228742800|gb|EEL92938.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 226

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  + E      S    D+  ++  +   G   L+
Sbjct: 6   LIVEDEEDLQNILVKRLNAEYYSVDGCGNGEDALDYISMTTYDLIVLDIMIP--GIDGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQRLRADNNTTPVLLLTAKDAIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|327398349|ref|YP_004339218.1| winged helix family two component transcriptional regulator [Hippea
           maritima DSM 10411]
 gi|327180978|gb|AEA33159.1| two component transcriptional regulator, winged helix family
           [Hippea maritima DSM 10411]
          Length = 222

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D        I    +   +++  ++ +   +L  +++ D+  I+  L   G   L
Sbjct: 3   ILLIEDDKETAHFIIKGLSESNYTVDHADNGKDGLYLAVNSKYDLLIIDRMLP--GIDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +++RA   ++P++ +S   S+   ++    G DD + KP    E+LAR+  + RR K
Sbjct: 61  SIVKMLRAADKRMPILILSALGSVDEKVEGLRIGADDYLPKPYAFSELLARIEVLLRRNK 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  +  +   +++  +        +   L   E ++L YL+ +RG+ + +T +   I+G
Sbjct: 121 ESQAKFLQVADLKINLENYTVTRAAKKIELKPTEFKLLVYLVRHRGQVITRTMLLENIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   + N+V+ HIS+LR K+      + + + R +GY I+
Sbjct: 181 -YNFDPQTNIVDVHISRLRSKIDRGFDKELIKTIRGIGYKIE 221


>gi|315282989|ref|ZP_07871272.1| transcriptional regulatory protein ResD [Listeria marthii FSL
           S4-120]
 gi|313613360|gb|EFR87221.1| transcriptional regulatory protein ResD [Listeria marthii FSL
           S4-120]
          Length = 238

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++  +   G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMP--GKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R     P++ ++        +  F+ G DD + KP   RE++ RV A+ RR K S
Sbjct: 66  VCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125

Query: 123 NNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +                +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  +
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234


>gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 244

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E       +A  D+  ++  +        
Sbjct: 8   ILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATPDLVVLDVMMP--KLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 126 SGANGIPSSGVIQINSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +  G  + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPGNPELILTARGTGY 231


>gi|259500798|ref|ZP_05743700.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|315654109|ref|ZP_07907025.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|259167492|gb|EEW51987.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|315488805|gb|EFU78451.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
          Length = 244

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++     E           D+  ++  L  K    L
Sbjct: 15  ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKK--DGL 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    + +I ++   +    +   + G DD V KP  +RE++ARV A  RR ++
Sbjct: 73  EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 132

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       N     G + +  +    E  G    L  RE  +L YL  + G+ + +  + 
Sbjct: 133 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             ++G +D   +   V+  + +LR+K+ +      +  ++R +GY +
Sbjct: 193 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYV 238


>gi|322417814|ref|YP_004197037.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124201|gb|ADW11761.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 224

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++   +      E    L      D+  ++  L  K    L
Sbjct: 3   ILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLVVLDWMLPKK--DGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R    V P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR +
Sbjct: 61  SVLKELRERKNVTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          +R+         + +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+  +     + + R +GY +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDREADKKLIHTVRGVGYIL 220


>gi|229074768|ref|ZP_04207787.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
 gi|229096067|ref|ZP_04227041.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
 gi|229115024|ref|ZP_04244435.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
 gi|228668440|gb|EEL23871.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
 gi|228687359|gb|EEL41263.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
 gi|228708366|gb|EEL60520.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
          Length = 243

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++  +   G+  +
Sbjct: 12  ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMP--GKDGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 70  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 129

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 130 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 190 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 240


>gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 237

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   +++ E  LQ   + + S +   L+      +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVD--TAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFLV 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKF 230


>gi|329925047|ref|ZP_08279991.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|328940166|gb|EGG36498.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 225

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 102/221 (46%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++        +G ++   +  E    L +  +  ++ ++  +  K     
Sbjct: 4   ILIADDDAHIRELLQYHLQTEGYTVLTASDGEEASVLLAEEQVHLAVVDVMMPNK--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L   IR +  VP+I ++    L      F  G DD + KP   RE+L R+ A+ RR + 
Sbjct: 62  QLCEEIRRYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQM 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS ++       +     + +  G+V  LP +E  +L  L +   +  ++ ++   I+G 
Sbjct: 122 VSADKIRLNETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWGT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   ++  V+ HI +LR++  ++ G   + + R +GY ++
Sbjct: 182 -DFDGDDRTVDVHIKRLRERFADRRGDFRIRTIRGVGYKLE 221


>gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 248

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 83  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|162147251|ref|YP_001601712.1| two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785828|emb|CAP55399.1| Two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 226

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V++       + G  +E  ++ +   +L  S   D+  ++  L G G   L
Sbjct: 3   ILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPG-GIDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   IRA +   P++ +S    +   +    +G DD V KP    E+LARV A+ RR +
Sbjct: 62  RLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRGR 121

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N    R     + +    R     G    L  RE R+LEYLM N G+ V +T +   +
Sbjct: 122 SDNAPLTRLNVADLEIDLLSRSSAAAGSRIDLQPREFRLLEYLMRNAGQVVTRTMLLEGV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H+S+LR+K+        + + R  GY +
Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFDTPLIHTIRNAGYML 223


>gi|153815879|ref|ZP_01968547.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
 gi|317500635|ref|ZP_07958854.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089885|ref|ZP_08338778.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846698|gb|EDK23616.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
 gi|316897953|gb|EFV20005.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403582|gb|EGG83140.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 230

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D            +E  N  + +  LQ     D   I   L+  G    
Sbjct: 5   ILIVEDEESIADLEKDYLELSNFEVEVAN--DGDTGLQKGLGGDFDLIILDLMLPGVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 63  EICRQIRDQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++ +  R   V GE      +E  +L +L ++      K ++F
Sbjct: 123 LINSNAEENEVIEIRGLKIDTTARRVWVGGEERSFTTKEFDLLTFLASHPNHVYTKEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 183 REIWDM-ESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRF 228


>gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++         G  +           L      D+  ++  L        
Sbjct: 9   LVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLVRDLEPDLVVLDVMLPD--MDGF 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   +  P++ ++     Q  +     G DD V KP    E++AR+ A+ RR  
Sbjct: 67  TVTRRMRETGRHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRRTS 126

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S    +     G + +  D  +    G    L   E ++L YLM N G+ ++K QI   
Sbjct: 127 GSLPDDDALLRVGDLEMDEDSHEVRRAGIEVDLSPTEFKLLRYLMLNAGRVLSKAQILDH 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN--KLGFD-----PVDSKRFLGYSI 220
           ++  +D   + N+VES+IS LR+K+ N    G D      + +KR +GY +
Sbjct: 187 VW-QYDWGGDANIVESYISYLRRKIDNVTVPGTDEALPALIHTKRGIGYLL 236


>gi|224827129|ref|ZP_03700225.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224600638|gb|EEG06825.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 228

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G                     D+  ++  L   G   L+
Sbjct: 11  LVVEDEPKLSRLLADYLAAAGFETACLADGLAVVPEVRRRLPDLILLDLMLP--GRDGLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP++ ++        L   + G DD + KP   RE++ARV AI RR +  
Sbjct: 69  ICRELRAFSDVPIVMVTARVEEIDRLLGLELGADDYICKPYSPREVVARVKAILRRSQRH 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                   + +  +G     QG    L   E R+L  L +  G+  ++ Q+   +Y    
Sbjct: 129 GALPADAGLTIDEEGYQASWQGRRLELTPAEFRLLRTLASAPGRVFSRDQLLDHLY-ADH 187

Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             V +  V+SHI  LR+KL       + + S   +GY ++
Sbjct: 188 RVVTDRTVDSHIKNLRRKLEQAAPQQEMIRSVYGVGYKLE 227


>gi|302551833|ref|ZP_07304175.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469451|gb|EFL32544.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 229

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        ++ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLP--GRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|326778385|ref|ZP_08237650.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326658718|gb|EGE43564.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 99/234 (42%), Gaps = 22/234 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   V++        +G     +++G+++L   E        D+  ++  +    
Sbjct: 11  ILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYA----PDLIVLDIQMPR-- 64

Query: 58  EKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L   R IRA  S  P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ 
Sbjct: 65  MDGLTAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALL 124

Query: 117 RRLK----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           RR              ++      +R+    R+         L R E  +LE  +++  +
Sbjct: 125 RRSSYAASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQ 184

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + QI  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 185 VLTREQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 237


>gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 241

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 102/230 (44%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G ++   +  +    LQ    +   A+   L+      L
Sbjct: 10  ILLVEDDHDIAALLRLNLEDEGYAIT--HEPDGGNALQRLETQPWDAVILDLMLPNVDGL 67

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   ++G DD + KP   +E++AR+ A++RR +
Sbjct: 68  EICRRIRQMTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQ 127

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 ++   +   + +    R   + G+   L  RE  +L +   + G+  ++  +  
Sbjct: 128 AMGQAQTDGIIQAHGLTIDPLARTVRLNGQHVDLTPREFELLYFFARHPGEVFSRLALLE 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI-DWN 223
            ++G +     E+ V +HI++LR K+  +    + V +    GY   + N
Sbjct: 188 QVWG-YQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAEQN 236


>gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 232

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  S +  E G + +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|332652704|ref|ZP_08418449.1| regulatory protein VanR [Ruminococcaceae bacterium D16]
 gi|332517850|gb|EGJ47453.1| regulatory protein VanR [Ruminococcaceae bacterium D16]
          Length = 238

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D       ++G ++  F +           R D++ ++  L        
Sbjct: 11  IMIVDDEAAIADLVDVYLKNEGYTVHKFYTATQALECVEQKRLDLAILDVMLPD--MDGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR     P++ ++        +     G DD + KP +  E++ARV    RR   
Sbjct: 69  TLCQKIRESHLFPILMLTAKVEDMDKITGLTLGADDYITKPFNPLELVARVKTQLRRYTR 128

Query: 122 SN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N             +   +++        +  E   L   E  IL YL + +G+ V+  
Sbjct: 129 YNPSSGCGEEVPQEYDIRGLQISKANHKCFLFEEELSLTPLEFSILWYLCSRQGQVVSSE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++F A +G        N V SHI++LR+K+  N      + +   +GY+I+
Sbjct: 189 ELFEAAWGEK-FMDSNNTVMSHIARLREKMHENSRKPKFIKTVWGVGYTIE 238


>gi|298242582|ref|ZP_06966389.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555636|gb|EFH89500.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +             +++     E   ++ +S   D+  ++  L   G    
Sbjct: 3   ILIIEDDPRLGPSLKKGLEGSHHAVDLLADGEDAVFMATSIPYDLVILDILLP--GLSGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   +  P++ ++    ++  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVCRQLREQGKTMPILLLTALGEVEHRVKGLDLGADDYLTKPFAFSELEARVRALLRRGG 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            VS+   +   I + +   + +    + PL  +E  +LE+ M +  + ++++ I   ++ 
Sbjct: 121 PVSSATLQFMDITLDTRTHEVKRAERLIPLGNKEYALLEFFMRHPHQVLSRSMIVEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D     NV++ +I  LR+KL N+   + + + R  GY +
Sbjct: 181 G-DTEHLSNVIDVYIRYLRRKLCNENEPNVIQTIRGSGYQL 220


>gi|284052047|ref|ZP_06382257.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
 gi|291566535|dbj|BAI88807.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 230

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G +    NS +           D+  ++  L  +     
Sbjct: 4   ILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLDQAGGQNFDLLILDLGLPDR--DGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           ++ + +R   +  P+I ++    L   +   ++G DD V KP    E+LARV A  R   
Sbjct: 62  QILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQT 121

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    N    T  + +    R+ +V      L  +E  +LE  + +  + +++ Q+   
Sbjct: 122 GKPADDNKTLSTANVCLNLYTREVQVADRTVQLSAKEFLLLETFLRHPEQVLSREQLLDQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ ++  LRKKL    G D +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKL----GSDRIETVRGMGYRL 220


>gi|302544907|ref|ZP_07297249.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462525|gb|EFL25618.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 225

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +  +        A+ D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFREAKPDLVLLDLMLP--GRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR +  
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEDP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 TPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|255320055|ref|ZP_05361251.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SK82]
 gi|262380561|ref|ZP_06073715.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255302923|gb|EET82144.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SK82]
 gi|262298007|gb|EEY85922.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 236

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  + G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPG-GISGV 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKTIDANGLLLDPVSQRVSFGDSILEMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWGG-NVYIEDRTIDVHIRRLRKVLEPYGADRFVQTVRGTGYRF 227


>gi|229163853|ref|ZP_04291794.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
 gi|228619595|gb|EEK76480.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
          Length = 232

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +Q    + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAIQVIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  S +    G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALAVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|94310594|ref|YP_583804.1| DNA-binding response regulator CreB [Cupriavidus metallidurans
           CH34]
 gi|93354446|gb|ABF08535.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Cupriavidus metallidurans CH34]
          Length = 232

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + D  +     +G+ +E             S R D+  ++  L        E
Sbjct: 7   LVVEDESAIADTILYALRTEGMQVETCTLGSEALDRVRSRRPDLVILDVGLPD--ISGFE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        +   + G DD V KP   RE+ ARV  I RR K +
Sbjct: 65  VCRSMRTFSDVPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRAKGA 124

Query: 123 NNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           ++         E       +DG     +G    L R E R+L  L+ + G+  A++Q+  
Sbjct: 125 SDSPHPSPMAQEEADFVHDTDGARLAYRGRWLDLTRYEYRLLALLVQHPGRIFARSQLMD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            ++    + V+   V++H+  LR KLR      DP+ + R +GYS++
Sbjct: 185 LVWHDSLDTVD-RTVDTHVKTLRAKLREIAPAGDPIRTHRGMGYSLE 230


>gi|163942589|ref|YP_001647473.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229014060|ref|ZP_04171184.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229169596|ref|ZP_04297299.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|163864786|gb|ABY45845.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228613871|gb|EEK70993.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228747316|gb|EEL97195.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 232

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAMHIIQTQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRGKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   E G + +  + R   V GE   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKVAENKSALEIGGVAIDPERRTVNVYGEPIELTPKEFDILYVLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWAEGYYESG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|323487591|ref|ZP_08092881.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|291547394|emb|CBL20502.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
 gi|323399090|gb|EGA91498.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
          Length = 231

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D       ++   +  F           S   D++ ++  L        
Sbjct: 5   ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPD--MNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L ++IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 63  SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 122

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +         +      + +     +  + GE   L   E  IL  L+++ G  V+  +
Sbjct: 123 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +F A++     +   + +  HI  LR+KL +       + +   +GY I
Sbjct: 183 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 231


>gi|166710916|ref|ZP_02242123.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 229

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                      +   +    D+  ++  L   G   L
Sbjct: 5   ILIVDDEPAIRDMVAFALRKGEFEPIHACDAREAQTAIADRLPDLILLDWMLP--GTSGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R  R      ++P+I ++        +   ++GVDD V KP   RE+LAR+ A+ RR
Sbjct: 63  DLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +     G +R+              P+   E R+L + M +  +   +TQ+   
Sbjct: 123 TREDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LRK L      + V + R  GY  
Sbjct: 183 VWGGS-VYVEERTIDVHIRRLRKTLEPFDLENMVQTVRGSGYRF 225


>gi|269137752|ref|YP_003294452.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Edwardsiella tarda EIB202]
 gi|267983412|gb|ACY83241.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Edwardsiella tarda EIB202]
 gi|304557809|gb|ADM40473.1| Transcriptional regulatory protein basR/pmrA [Edwardsiella tarda
           FL6-60]
          Length = 220

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +  + +   +      L  S    +  ++  L   G    
Sbjct: 3   ILIVEDDTLIQQGLAQAMARENYACDCAGNAASASALLQSGHYSLIILDLGLP--GMDGA 60

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R   R     P++ ++   ++   +   D+G DD + KP    E+LARV A+ RR++
Sbjct: 61  SALRQWRREGIDAPVLILTARDTVSDRVGGLDAGADDYLVKPFALAELLARVRALIRRMQ 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              NN  +   I +    +     G    +  +E  IL  LM   G+ +++  +   +Y 
Sbjct: 121 GLCNNALQVDDIHLDLSSQQVSCGGLPLEITPKEFAILTRLMMRAGQTISREVLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             DE +  N +E HI  LR+KL    G + + + R +GY ++
Sbjct: 181 WQDE-LSSNSLEVHIHNLRRKL----GKNRIKTLRGVGYRLE 217


>gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 232

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAMHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   + G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|148272229|ref|YP_001221790.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830159|emb|CAN01088.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                  A+ D+  ++  L   G   +
Sbjct: 5   ILVVDDDTALAEMIGIVLRTEGFEPSFCGDGGQALAAFHDAKPDLVLLDLMLP--GLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  +IRA S VP+I ++        +   +SG DD + KP + +E++AR+    R    
Sbjct: 63  QVCDLIRAESGVPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRPAAA 122

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++    + G + V  +G +     E   L   E  +L  L +   +   +  +   ++G 
Sbjct: 123 ASPGLLQVGDLVVDVEGHEVRRGEERINLTPLEFDLLHALASRPQQVFTREMLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +    +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 182 YQYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGYR 221


>gi|262371688|ref|ZP_06064967.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311713|gb|EEY92798.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 227

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +  F+  +         +  +  ++  +       L
Sbjct: 4   IMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMVPR--MDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        +   + G DD + KP   +E++ARV A+ RRL+ 
Sbjct: 62  TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLER 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I    
Sbjct: 122 KAEPEQNDLFRIDKAQQRIWYQQKALTLTPTEFRLLELFLEHLGQVYSRAQLLDHI-NPD 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
              V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 181 SFDVADRVIDSHIKNLRRKITEAADTGNRHEWIQAVYGVGYRFEY 225


>gi|182437750|ref|YP_001825469.1| putative two-component systen response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466266|dbj|BAG20786.1| putative two-component systen response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 245

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 22/234 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   V++        +G     +++G+++L   E        D   I   +    
Sbjct: 11  ILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEA------YDPDLIVLDIQMPR 64

Query: 58  EKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L   R IRA  S  P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ 
Sbjct: 65  MDGLTAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALL 124

Query: 117 RRLK----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           RR              ++      +R+    R+         L R E  +LE  +++  +
Sbjct: 125 RRSSYAASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQ 184

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + QI  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 185 VLTREQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 237


>gi|302385604|ref|YP_003821426.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302196232|gb|ADL03803.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  S+  F + +       +   D++ ++  L        
Sbjct: 5   ILVVDDEQEISDLLELYLQNENYSVFKFYTAKEALACIETTEIDIAILDIMLPD--MSGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR +   P+I ++        +     G DD + KP    E++ARV A  RR K 
Sbjct: 63  TLCQKIRVNHAYPIIMLTAKDQEIDKITGLTLGADDYITKPFRPLEVVARVKAQLRRYKK 122

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N+               + + S   +  +  +   L   E  IL  L+  +GK V+  +
Sbjct: 123 YNSVQAGTTEESIIVHSGLVLNSSTHECILNEKPLDLTPTEFYILRILLERKGKVVSAEE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +F  I+         N +  HI  LR+K+ + +     + +   +GY I+
Sbjct: 183 LFREIWKDEYYTKSNNTITVHIRHLREKMGDTVENPQYIKTIWGVGYKIE 232


>gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 237

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++   +    +G  + G  S +    L+   RE    +   ++      L 
Sbjct: 10  LVVDDEPALREALQSSLEYEGYRV-GLAS-DGLAALEILEREPYELVLLDVMMPRLDGLT 67

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +RA  + VP++ ++   ++   +   D+G DD + KP    E+LARV A+ RR  +
Sbjct: 68  ACRRLRAAGNHVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRRSAL 127

Query: 122 S--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +              G +R+ +  R+    GE   L R E  +LE LM +  + + + QI
Sbjct: 128 TAPAAADDDGGVLLHGDLRMDTASREVTRAGEPLELTRTEYLLLELLMVHPRQVLTREQI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            S ++G FD     N ++ ++  LR+K         + + R +GY +
Sbjct: 188 LSEVWG-FDFEPSSNSLDVYVMYLRRKTEAAGRSRLIHTVRGVGYVL 233


>gi|170722714|ref|YP_001750402.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760717|gb|ACA74033.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 227

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G  A     G++++   +      +  +A+ DV  ++  L    E  L+
Sbjct: 4   LLCEDDDLIASGICAGLTAQGLTVDRVANAGAARAMLQAAQFDVMILDLGLPD--EDGLK 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R +R     +P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLRRLRQQGIDLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N  E GP+R      +  + G+   L RRE+ +L+ L+ N G+ ++  Q+   +YG 
Sbjct: 122 RAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL    G   V++ R LGY +
Sbjct: 182 SDE-VESNALNVHIHHLRRKL----GNSIVETVRGLGYRL 216


>gi|160881990|ref|YP_001560958.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430656|gb|ABX44219.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +         G  ++  N+ +       +    +  ++  L        
Sbjct: 4   ILIVEDEAAIAELEKDYLELSGFEVDIENTGDKGLAAALTGDYKLIILDLMLPNV--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R    +P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKRVREEKNIPVIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   I++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIGTGMKENEMIEIRGIKIDKTARRVYVNGEERAFTTKEFDLLTFLAQNPNHVYTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+         +++   +GY  
Sbjct: 182 QEIWDM-ESIGDIATVTVHIKKIREKIEANTSKPQYIETIWGVGYRF 227


>gi|331663464|ref|ZP_08364374.1| transcriptional activator protein CopR [Escherichia coli TA143]
 gi|331059263|gb|EGI31240.1| transcriptional activator protein CopR [Escherichia coli TA143]
          Length = 269

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 19  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234


>gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1]
          Length = 234

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++   A     G ++    +           R D+  ++  L        
Sbjct: 7   LLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAVREQRPDLIVLDVMLPDF--DGF 64

Query: 62  ELPRIIR------AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           E+ R +R      A    P++ ++   + +  +    +G DD V KP +  E++ R+ AI
Sbjct: 65  EVVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAI 124

Query: 116 YRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR   + ++ R   G + +  D       G    L   E  +L  LM N G+ ++K+Q+
Sbjct: 125 LRRTSGRQADGRLVVGMLELDPDSHQVTRDGRPVQLSPTEFSLLRVLMENAGQVLSKSQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++  +D   ++++V S+IS LR+K+ +      + + R  GY +
Sbjct: 185 LELVW-QYDFGGDDSIVASYISYLRRKV-DLDEPKLIHTVRGTGYVL 229


>gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 227

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    + +  + L+ + RE    I   ++      +
Sbjct: 6   ILIIEDEVKIARFLELELMHEGYQV--AQAHDGRKGLEMAERETFDLIILDIMLPYMNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +S+VP+I ++    +   +   D G +D + KP    E+LAR+ +  +    
Sbjct: 64  EVLRKIRHNSEVPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSALKTKNH 123

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   ++G +++  D        E   L ++E  +L Y + N    + + +I   ++
Sbjct: 124 GISEGRSLQSGSLKLDIDKHKVTYDEETVELTKKEFDLLHYFLENHDIVLTRDKILQTVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   + N+V+ +I  LR K+ +K     + + R +GY +
Sbjct: 184 G-YDYMGDTNIVDVYIRYLRSKIDDKYNKKIIYTIRGVGYLL 224


>gi|310779288|ref|YP_003967621.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309748611|gb|ADO83273.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 217

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 100/220 (45%), Gaps = 8/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +G  ++          +      D+  ++  L        
Sbjct: 4   ILVVEDEWKMRRLIKDYLVKEGYHVDEAGDGMQALEMFQEGGYDLVILDIMLP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        +  F+   D+ + KP + R ++AR+ AI+RR   
Sbjct: 62  SVCREIRRESMVPVIMLTARSEENDQIFGFELEADEYITKPFNPRLLVARIKAIFRRAGK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + +   G I +    R  E++GE   L  +E  +L Y + NRG  +++ +I ++++G +
Sbjct: 122 PD-KISRGDIEIDEGSRKVEIKGEAVELTSKEFEMLLYFVQNRGIALSREKILNSVWG-W 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +   V++H+ +LRKK+    G   + + R  GY  +
Sbjct: 180 DYFGDVRTVDTHVKRLRKKI----GEIYIQTIRGFGYRFE 215


>gi|71736826|ref|YP_275872.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485923|ref|ZP_05639964.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289627099|ref|ZP_06460053.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648110|ref|ZP_06479453.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487951|ref|ZP_07005990.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557379|gb|AAZ36590.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157502|gb|EFH98583.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866032|gb|EGH00741.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330986733|gb|EGH84836.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 225

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGYLFN 221


>gi|21221456|ref|NP_627235.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289771258|ref|ZP_06530636.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799208|emb|CAB90924.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701457|gb|EFD68886.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLP--GRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|170077600|ref|YP_001734238.1| two-component DNA binding response regulator [Synechococcus sp. PCC
           7002]
 gi|169885269|gb|ACA98982.1| Two-component DNA binding response regulator [Synechococcus sp. PCC
           7002]
          Length = 242

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E        A  D+  ++  +        
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYEVVTAADGEEALATFDEADPDLVVLDVMMP--KLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGGTGIPSSGVIHVGSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|317970310|ref|ZP_07971700.1| two component transcriptional regulator [Synechococcus sp. CB0205]
          Length = 234

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G S+    + +           ++  ++  L   G   L
Sbjct: 13  LLVVEDDDTIRETVCEALELEGFSVTPATNGQSAWDRLKRDPFELIVLDVMLP--GINGL 70

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +    Q P ++ +S   +    +   + G DD + KP   RE++AR  A+ RR +
Sbjct: 71  DLCRKLIELPQRPLVLMVSARDTETDRVLGLELGADDYLVKPFGIRELVARCRALLRRHQ 130

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S+ +    +   + +F       + G    L  +E ++LE  M N  +  ++ Q+   +
Sbjct: 131 ASDQQPSELKADNLSLFPAECRVCLDGLELKLSPKEFKLLELFMQNPKRVWSREQLIEQV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +G FD   +   V+ HI  LR+K+  +      + + R  GY  
Sbjct: 191 WG-FDYIGDNKTVDVHIRWLREKIEEDPSNPSKLVTVRGFGYRF 233


>gi|229543964|ref|ZP_04433023.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325103|gb|EEN90779.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 238

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 99/232 (42%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  +++   + + +  L+ +  +D S I   ++  G+  +
Sbjct: 7   ILVVDDEERIRRLLRMYLERENYTID--EAEDGDTALKMALEKDYSCILLDIMMPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +      P+I ++        ++ F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCQELHEKKMTPVIMLTAKGEEANRVEGFEVGADDYIVKPFSPREVVLRVKALLRRSLQ 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      I + +D       G+   L  +E  +L +L  +  K   + Q
Sbjct: 125 TGFLNADTKAKDIVVFPHITIDNDAHRVTADGKEVNLTPKEYELLYFLAKSPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 185 LLKEVW-HYEFFGDLRTVDTHVKRLREKLNKVSENAAKMIVTVWGVGYKFEV 235


>gi|300822262|ref|ZP_07102403.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|300525145|gb|EFK46214.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|323936954|gb|EGB33235.1| heavy metal response regulator [Escherichia coli E1520]
          Length = 260

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
 gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
          Length = 240

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +    E ++ +  E    I   ++  G    
Sbjct: 13  LLVVDDEFNILELLATSLRFAGFEV--VTAGNGREAIEKAENEQPDLIVLDVMMPGMDGF 70

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   +  P++ ++   + +  +    +G DD V KP    E++AR+ AI RR +
Sbjct: 71  EVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 130

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            + +  D  +  +  E   L   E  +L YLM N  + ++K QI   
Sbjct: 131 NAQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDH 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSI 220
           ++  +D   + ++VES+IS LR+K+ N  +     + +KR +GY I
Sbjct: 191 VW-EYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMI 235


>gi|254976797|ref|ZP_05273269.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094183|ref|ZP_05323661.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255315935|ref|ZP_05357518.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518594|ref|ZP_05386270.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651714|ref|ZP_05398616.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684746|ref|YP_003216031.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688404|ref|YP_003219538.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521513|ref|ZP_07407860.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260210909|emb|CBA66124.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214421|emb|CBE06850.1| two-component response regulator [Clostridium difficile R20291]
          Length = 223

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G +    N       +  S   D+  ++  +        
Sbjct: 4   ILVVEDEKRMQSIIVEYMQKGGYTCITANDGVEALTILKSNNIDLMILDIMMPY--LDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R+ R  + +P+I ++     +  L  ++ G DD + KP   + +LA+V A+ RR   
Sbjct: 62  SVCRVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  N    G I +    R   V+ ++  L  +E  +L   M N  +  ++ ++ + I+G
Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D       V++HI  LRKKL ++     + +    GY  + 
Sbjct: 182 -YDFEGNTRTVDTHIKTLRKKLGSEGHH--IVTLIRSGYKFEV 221


>gi|319896803|ref|YP_004134997.1| transcriptional regulatory protein qseb [Haemophilus influenzae
           F3031]
 gi|317432306|emb|CBY80659.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3031]
          Length = 220

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 102/220 (46%), Gaps = 8/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L       L
Sbjct: 3   ILLIEDDNLIGNGLQIGLTTLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLP--KLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R+ H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRYG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++  E   +++  + R   +  +   L  RE ++LE  M N+ + ++++ I   +   
Sbjct: 121 YHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKL-SS 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 180 WDEEISSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 215


>gi|148378611|ref|YP_001253152.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931129|ref|YP_001382998.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935657|ref|YP_001386545.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153941463|ref|YP_001389974.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|148288095|emb|CAL82163.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927173|gb|ABS32673.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931571|gb|ABS37070.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152937359|gb|ABS42857.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318058|gb|ADF98435.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
 gi|322804930|emb|CBZ02489.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 230

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++  F +   EE L+   RE+V+ +   ++      L
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNV--FKASCGEEALEILEREEVNLMVLDIMMPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ +  R    +P++ +S        ++   +G DD V KP +H E+  R+ A+ RR   
Sbjct: 63  EVCKRAREKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++S+N      + +        +      L  RE  IL  L  NRG   +  +IF
Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++         N V  H+S+LR K+   + G   + +   +GY I+
Sbjct: 183 EKVWKER-YFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIE 229


>gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR
          Length = 214

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 92/219 (42%), Gaps = 9/219 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++     + ++ L  +       I   L+      L
Sbjct: 4   ILIVEDEQNLARFLELELTHENYNVD--TEYDGQDGLDKALSHYYDLIILDLMLPSINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+LAR+ AI RR   
Sbjct: 62  EICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I V        V G    L + E  +L  L  N+   + + QI + ++G +
Sbjct: 119 ---QPQKDIIDVNGTLLKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG-Y 174

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 175 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 213


>gi|15613383|ref|NP_241686.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173434|dbj|BAB04539.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 234

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +G  +      E    L      D+  ++  L  +    +
Sbjct: 6   ILLIEDDVSISEMVKEHLQLEGYHVCCAFDGEEATRLFEQNTYDLVLLDLMLPRR--NGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +  + IR  S VP++ +S   S          G DD + KP    E+ ARV A  RR   
Sbjct: 64  DCLQWIRTKSVVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRRTVN 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    N R +   + V       + +GE   L  +E +IL+  + +  K   K Q+
Sbjct: 124 YAQASQSAENERIKIHELVVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKKVFTKEQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + +++   D   +ENV+  HI +LR+K+ +       + +   +GY +
Sbjct: 184 YRSVWN-DDYYSDENVINVHIRRLREKIEDTPSKPQYIKTIWGIGYRM 230


>gi|229084576|ref|ZP_04216846.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
 gi|228698726|gb|EEL51441.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
          Length = 238

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 97/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  +++  ++ +  E L+ + + D   I   ++  G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIDEADNGD--EALEKALQNDYDLILLDIMMPGKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCKGIREKKATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G+   L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  K       + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSSDAAKMIVTVWGVGYKFEV 235


>gi|10281108|gb|AAG15433.1|AF189161_1 putative response regulator [Streptomyces coelicolor]
          Length = 228

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 9   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLP--GRDGIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 67  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 127 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 224


>gi|302188560|ref|ZP_07265233.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 227

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIMLP--GRNGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 68  DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRSSS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S      G + V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 128 SEPHTPKG-LLVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD + KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 236

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++         G  +           L +    D+  ++  L        
Sbjct: 6   LVVVDDEPNIRELLATSLRFAGFEVFAAADGLSAIQLITDTTPDLVVLDVMLPD--LDGF 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++     Q  +     G DD V KP    E++AR+ AI RR  
Sbjct: 64  EVTRRLRSKDIHSPVLFLTAKDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTN 123

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +       + +  D  +    G V  L   E ++L YLM N G+ ++K QI   
Sbjct: 124 HQIDDNDAVLSYADLDMDEDSHEVRRAGVVVDLSPTEFKLLRYLMLNSGRVLSKQQILDH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           ++  +D   + N+VES+IS LR+K+      D       + +KR +GY +
Sbjct: 184 VWD-YDWGGDANIVESYISYLRRKIDAVTQPDGSPVQPLIHTKRGVGYML 232


>gi|332766713|gb|EGJ96917.1| response regulator [Shigella flexneri 2930-71]
 gi|333017489|gb|EGK36802.1| transcriptional activator protein irlR [Shigella flexneri K-227]
          Length = 253

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|302187207|ref|ZP_07263880.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|330974381|gb|EGH74447.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 225

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFN 221


>gi|161616164|ref|YP_001590130.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161365528|gb|ABX69296.1| hypothetical protein SPAB_03966 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|267995367|gb|ACY90252.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
          Length = 270

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L   G    
Sbjct: 54  ILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLP--GMDGR 111

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R  R    Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 172 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 232 -WDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 267


>gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 226

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +    D    +E  +  +    L      D+  ++  L       +
Sbjct: 3   ILLVEDDERISDAIVEDLSDQHYLVEVAHDGQEAWELVDVFSYDLILLDVMLP--KMDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R+   Q P++ I+   +++  +   D G DD + KP   +E+ ARV A+ RR  
Sbjct: 61  TLCRKLRSGGCQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALLRRGT 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S     + G + +         Q ++ PL  +E  +LE+ + +  +   + Q+   ++ 
Sbjct: 121 SSLPPVLKWGDLCLDPSSCKVYYQEQLIPLSPKEYTLLEFFLRHEHRVFNRAQLLEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            F+   EE  V++HI  LR+KL       D +++   LGY +
Sbjct: 180 PFERLPEEATVKAHIRSLRQKLDAVGAPSDVIETVYGLGYRL 221


>gi|196047620|ref|ZP_03114827.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
 gi|196021534|gb|EDX60234.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
          Length = 238

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 94/232 (40%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  ++E  ++ +    +      D+  ++  +   G+  +
Sbjct: 7   ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDIALEMALQNDYDLILLDLMMP--GKDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  ++      + +   +GY  + 
Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235


>gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638]
 gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 238

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L   A+ D   ++  L       L
Sbjct: 7   ILLVEDDGDIASLLRLHLEDEGYVITHEVDGAKALLLLEQAQWDAVILDLMLPHV--DGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   ++G DD + KP   +E++AR+ A++RR +
Sbjct: 65  EICRRIRQLTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQ 124

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +N +     + +    R  ++ G+   L  RE  +L +   + G+  ++  +  
Sbjct: 125 AMGLAQTNGQIYAHGLALDPLLRSVQLNGKEVVLTPREFELLYFFARHPGEVFSRLALLE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G +     E+ V +HI++LR K+  +    + + +    GY  
Sbjct: 185 QVWG-YQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKF 229


>gi|92115368|ref|YP_575296.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91798458|gb|ABE60597.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 229

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++            +   ++ +    +    + D+  ++  +   G   +E
Sbjct: 7   LIVDDEASIREMIAVALEMADYRVLEADNAQAAHAMVVDDQPDLLLLDWMMP--GTSGIE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++   A +++P+I ++        +   ++G DD + KP   RE++AR+ A+ RR 
Sbjct: 65  LARRLKRDTATAELPIILLTAKSEEDNKIQGLEAGADDYITKPFSPRELVARLKAVLRRT 124

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   +  E   + +          G+   +   E R+L++ M ++ +   ++Q+   +
Sbjct: 125 TPKGVEDPVEIEGLLLDPVSHRVSANGQALDVGPTEYRLLQFFMTHQERAYTRSQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L        + + R  GY  
Sbjct: 185 WGG-NVYVEERTVDVHIRRLRKALGEAHQH-LIQTVRGTGYRF 225


>gi|328882803|emb|CCA56042.1| DNA-binding response regulator mtrA [Streptomyces venezuelae ATCC
           10712]
          Length = 225

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLP--GRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 5   ILIVDDDKDIRNLISVYLENEGLQTQKAEDAIEALKLLEEKEFDLILLDVMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACLKIREEQTIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRHKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       N  E   + + SD R   V+ +   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTDTNKNKNTIEMVGLTINSDTRQVWVKNQEVRLTPKEFDILELLARNKGMVLSVEKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++         N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVW-KEQFYKSNNNVMVHITKIRDKIEEDSKHPIYIKTVWGVGYKI 228


>gi|154496426|ref|ZP_02035122.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
           29799]
 gi|150274509|gb|EDN01586.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
           29799]
          Length = 229

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEK 59
            +++DD   + D        +G ++  F      + LQ   RE  D++ ++  L      
Sbjct: 5   ILVVDDEPEIADLVEVYLKSEGFTV--FKCGTGADALQWVNRERLDLAILDVMLPD--IS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              L   IR     P++ ++        +     G DD + KP +  E++ARV A  RR 
Sbjct: 61  GFTLCGEIRREHHFPVLMLTARTEDMDKITGLTIGADDYMTKPFNPLELVARVKAQLRRY 120

Query: 120 KVSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              N          +   + +     +  +  +   L   E  IL  L  NRG+ ++  +
Sbjct: 121 THYNENDRPVGDIIDFNGLVINRSTHECTLYDKPLNLTPLEFDILWMLCENRGQVISAEK 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +F +++G        N V  HI +LR+K+         + +   +GY ID
Sbjct: 181 LFESVWGEKYLDRN-NTVMVHIRRLREKMGEPGRNPRFIKTVWGVGYKID 229


>gi|52144960|ref|YP_081869.1| response regulator [Bacillus cereus E33L]
 gi|51978429|gb|AAU19979.1| response regulator [Bacillus cereus E33L]
          Length = 237

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +++        +   ++   ++  +E LQ   + + + +   L+      +
Sbjct: 6   ILIAEDDKEIRNLLKIYLERELYMVD--TAINGDEALQLFNQNNYNLVILDLMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSDANIQEKTTLTFKGLLIDLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWDN-NYIEDDNTVMVHIRKLRKKIEVDPSNPKFIQTVWGIGYKF 230


>gi|37523697|ref|NP_927074.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214702|dbj|BAC92069.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 234

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD  L+++      G++G S+          + +++S + D+  ++  L       L
Sbjct: 11  LVVDDAELIRETVGMALGEEGYSVVLAEDGRQALDLVRNSDKVDLIVLDLMLPH--LNGL 68

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R++R     VP++ ++   +    +   + G DD + KP   RE++AR  A+ RR  
Sbjct: 69  DLCRLLRREGNAVPILMLTAKGTETDRVVGLEVGADDYLPKPFGMRELIARCRAVLRRHT 128

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  +        G + + +      V+     L  +E R+LE  M N  +  ++ Q+  
Sbjct: 129 RTQTQDNSAVLRCGDLCMNTQECRVRVRDVEVDLSPKEFRLLELFMRNPRRVWSREQLIE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 189 RVWGP-DFMGDSKTVDVHIRWLREKLEADPSHPEYLVTVRGFGYRF 233


>gi|330960611|gb|EGH60871.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 225

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHNLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFN 221


>gi|310828176|ref|YP_003960533.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
 gi|308739910|gb|ADO37570.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
          Length = 231

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 8/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +     A    +G   E   + + EE L +  RE  + I   ++       E
Sbjct: 5   LIADDNRQITAVLTAYARKEGF--EPVVAYDGEEALAAYRREAPAVILLDVMMPKLDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I I+        +   D G DD + KP    E++ARV AI RRL   
Sbjct: 63  VCRQIREESAVPIIMITARGEDFEKIMGLDIGADDYIVKPFSGGEVMARVRAILRRLSRD 122

Query: 123 NNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +  D     V GE  PL ++E  +L  L ANR K  ++  +  A++
Sbjct: 123 GGARLQFFSYRGLTIDLDTYTTTVDGEAIPLTKKETELLWTLAANRQKVFSRDNLLDAVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
           G +D   +   V+SHI +LR KL  +      + +   +GY  + N
Sbjct: 183 G-YDYYGDNRTVDSHIRRLRAKLDKRDHPGWSIATIWGVGYRFEVN 227


>gi|295705558|ref|YP_003598633.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294803217|gb|ADF40283.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 225

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            +L+DD   +         D+G  +    + E +E L       D+  ++  +   G   
Sbjct: 5   ILLVDDEKDIISFMKDALQDEGYEV--VFAYEGQEALTKLKINPDLIVLDVMMP--GMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L  +IR     P+I +S   + Q  +     G DD + KP   +E+ AR+ A  RR +
Sbjct: 61  FALCELIRKSISCPIIFLSAKQTEQDRVKGLLVGGDDYLVKPFSMKELKARIYAHLRREQ 120

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             N    NR   G + +  +G       E  P   RE  I+ +L  + G+   + Q++  
Sbjct: 121 RINSNSYNRLHFGELTIDLNGYQILHNNEAIPFTSREFEIVHFLALHPGQVFTREQLYEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G +D   + + +  H+ K+R KL        + +   +GY 
Sbjct: 181 VWG-YDAEGDSSTITEHVKKIRAKLLKYDETPYISTVWGIGYK 222


>gi|291548797|emb|CBL25059.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 224

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +  S++                 D   ++  L   G+   
Sbjct: 3   LLIVEDENDLRNIVKKRLVKEHYSVDACGDGLEAMAYIDMTSYDGIILDIMLP--GKDGY 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +R      P++ ++   S++  +   D G DD + KP    E+LAR+  + RR  
Sbjct: 61  EILRELRQREDDTPVLLLTAKDSIEDRVRGLDLGADDYLIKPFAFEELLARIRVMMRRKP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++N+ +   + +  D R     G    L  +E  +LE LM N+   + + QI    + 
Sbjct: 121 QFTSNQLKIADLILDRDTRKVTRAGNEIDLSAKEFMVLECLMRNKNIVMTRQQIEQNAWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            FD     NV++ +I  LRKK+  +     + + R +GY +  N
Sbjct: 181 -FDFEGGSNVIDVYIRYLRKKIDAQYEQKLIHTVRGVGYVMREN 223


>gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 223

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 101/221 (45%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +      E    L      D+  ++  L  K     
Sbjct: 9   ILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKK--DGW 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
            + R I+ +++ P+I ++     +  +  F+ G DD + KP +++ +LARV ++ R+   
Sbjct: 67  SILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  +  E G + +               L  +E  +L YL+ N    +++ ++ + ++G 
Sbjct: 127 MVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   ++  +++HI  LRKK+    G + + + R +GY +D
Sbjct: 186 YDFLGDDRTIDTHIKNLRKKI----GKNAIKTIRGIGYKLD 222


>gi|159029102|emb|CAO90091.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +   ++      +   +  D+  ++  L       L
Sbjct: 5   ILLVEDDPKLAEFIATELHLEGYQVTIASNGMDGLKIARDSSPDLLILDWMLPV--ISGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +R    + P+I ++    +   +   ++G DD V KP    E+LARV A  RR  
Sbjct: 63  DLCLRLRKTGMEAPIIILTAKDEIPDRVTGLNAGADDYVTKPFSMEELLARVKARLRRTH 122

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N      + +    R+     ++  L  +E  +LE+++ +  + + + QI   ++G
Sbjct: 123 AQDLNIFTFEDLTLNCLAREVYRDSQLIELTAKEFDLLEFILRHPRQVLTREQILETVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E +I  LR KL +      + + R +GY +
Sbjct: 183 -YDFMGDSNIIEVYIRALRVKLESANPKRLIQTVRGVGYVL 222


>gi|228990402|ref|ZP_04150367.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228768928|gb|EEM17526.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 210

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 86/203 (42%), Gaps = 13/203 (6%)

Query: 28  GFNSLEFEEW-----LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           G+   E E       +  +   D   ++  +       + + + IR  S VP+I ++   
Sbjct: 13  GYEWGEAENGKDALHMLDTDHYDFVILDIMMPQ--MDGISVCKEIRKTSDVPIIFLTAKG 70

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRD 139
                ++    G DD + KP    E++AR+ A+ RR           + GPI +    R 
Sbjct: 71  EEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEELQFGPIVINEKSRR 130

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
            E+ GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A     V++H+  +R 
Sbjct: 131 IEIDGEPISLTVKEFDLLYFLCGHSGQVFSREQLLEKVWG-YDYAGSTRTVDTHVKTMRL 189

Query: 200 KLRNKLGFDPVDSKRFLGYSIDW 222
           KL      + + +   +GY  + 
Sbjct: 190 KLGESG--NYIQTVWGVGYKFEV 210


>gi|188493946|ref|ZP_03001216.1| heavy metal response regulator [Escherichia coli 53638]
 gi|193071320|ref|ZP_03052238.1| heavy metal response regulator [Escherichia coli E110019]
 gi|300899234|ref|ZP_07117505.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300901970|ref|ZP_07119998.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|301304238|ref|ZP_07210353.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|331683515|ref|ZP_08384116.1| transcriptional activator protein CopR [Escherichia coli H299]
 gi|188489145|gb|EDU64248.1| heavy metal response regulator [Escherichia coli 53638]
 gi|192955362|gb|EDV85847.1| heavy metal response regulator [Escherichia coli E110019]
 gi|300357145|gb|EFJ73015.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300405938|gb|EFJ89476.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300840495|gb|EFK68255.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|315253295|gb|EFU33263.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1]
 gi|331079730|gb|EGI50927.1| transcriptional activator protein CopR [Escherichia coli H299]
          Length = 260

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHT 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|332800512|ref|YP_004462011.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332698247|gb|AEE92704.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 229

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++    + + +E +  + +ED   I   ++   +   
Sbjct: 5   ILVVDDEKPIVDILRYNLSKEGYNV--LAAYDGDEAINIALKEDPDLILLDIMLPKQDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R     P+I ++        +   + G DD + KP   RE++ARV A  RR+ +
Sbjct: 63  SVCKKLREKITSPIIMLTARGEEVDKVLGLELGADDYITKPFSMRELMARVKANLRRIAL 122

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S           G + +         +G+   L  RE  +++YL    G+   + ++   
Sbjct: 123 SEPGGEEEIIRLGDLELDLKSYVVRKRGKPLDLTFREYELIKYLSTQAGQVFTREKLLEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           ++G ++   +   V+  + +LR+K+ +       + +KR +GY  
Sbjct: 183 VWG-YEYYGDIRTVDVTVRRLREKVEDDPANPTYIITKRGVGYYF 226


>gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 230

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E  ++        SS   D+  ++  L        
Sbjct: 6   ILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEASSKDYDLILLDLMLPE--LDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   D G DD + KP    E+LARV A +RR + 
Sbjct: 64  EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            + +    R      +V  L RRE  +L  LM N G  V +  + S 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++E  E NVV+ +I  LR K+  +     + + R LGY +
Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVM 226


>gi|239825747|ref|YP_002948371.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239806040|gb|ACS23105.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 232

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 7/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A + +         G S    +  E    L  S   D   ++  L        E
Sbjct: 8   LIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLP--KLNGWE 65

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + + IR     VP+I ++        +   + G DD + KP    E++ARV  + RR   
Sbjct: 66  VCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTIL 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +R +   I +        +  E   +  +E  +  YL  N  + + + Q+   ++
Sbjct: 126 SESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G ++   +   V+ HI ++R KL        + + R +GY  + N
Sbjct: 186 G-YEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFEEN 229


>gi|331658014|ref|ZP_08358976.1| transcriptional activator protein CopR [Escherichia coli TA206]
 gi|331056262|gb|EGI28271.1| transcriptional activator protein CopR [Escherichia coli TA206]
          Length = 260

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|315639566|ref|ZP_07894707.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315484665|gb|EFU75120.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 241

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 106/238 (44%), Gaps = 24/238 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   V +     F ++G       +G   L+   +L +    D+  ++  L    
Sbjct: 5   ILMIEDNESVSEMMQMFFLNEGWEATFKYDGKEGLDT--FLANPHFWDLITLDLNLPS-- 60

Query: 58  EKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              + + R IR  S+ VP+I ++   S    +   + G DD V KP     ++AR+ A++
Sbjct: 61  MDGMIVAREIRKVSKTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALH 120

Query: 117 RRLKVSNNR------------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMAN 163
           RR+++                 ET  ++V +  R+  + G++   L  +E  +L  L   
Sbjct: 121 RRMELVEKEGKVQEASDQEFDIETQFLKVNTKTREAYLNGKLIEGLTPKEFDLLYTLAKK 180

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 181 PRQVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 236


>gi|229593016|ref|YP_002875135.1| DNA-binding response regulator CreB [Pseudomonas fluorescens SBW25]
 gi|229364882|emb|CAY52950.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 222

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  I     +G +    +  +     Q     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLIFALQGEGFTTTWLSLGQEALAYQRQTPADLVILDIGLPD--ITGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVTARVRAILKRIGP 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S   A     +V  +      + +   L R E R+L+ L+    +  ++ Q+  A+ G+ 
Sbjct: 122 SAAPA---VFQVDLERMQISYRSQPLSLTRHEFRLLQSLLEQPERVFSREQLLDAV-GVA 177

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
            +A  E  ++SHI  LR KLR+     +P+ + R LGYS
Sbjct: 178 ADAGYERNIDSHIKSLRSKLRSVAADAEPIQTHRGLGYS 216


>gi|309789569|ref|ZP_07684150.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308228305|gb|EFO81952.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 229

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V+        + G  +    + +  E L  + RE    I   ++       
Sbjct: 6   ILVVDDHANVRALLKDYLSEHGFRV--ITAADGAEALAVAGREQPDLILLDVMMPKLDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  +  R     P+I ++   +    +   + G DD V KP    E++ARV A+ RR   
Sbjct: 64  QFMQTFRKRHNTPVIMLTARIAESDKVVGLELGADDYVTKPFGMHELVARVRAVLRRSSP 123

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +    R   V      L   E  +L  LM   G+  ++ Q+   +
Sbjct: 124 DALNPDALLRVGDLTLNRATRVVRVGERDVSLTPSEFALLAALMEAPGRVFSREQLLERL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            G  D    E  ++ HI  LRKKL  +      V++   +GY 
Sbjct: 184 QGN-DYEGVERTIDVHIRNLRKKLEPDPTQPRYVETVFGVGYR 225


>gi|308049852|ref|YP_003913418.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307632042|gb|ADN76344.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 224

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+         + G  ++   +    E+L ++   D++ ++  L    E  L
Sbjct: 3   ILVIEDDPLLCHHLKVRLSELGNQVQASQTASEGEYLANNYPLDIAVVDLGLPD--ESGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R   +  P++ ++   S Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLIQRLRDQGKAFPILILTARDSWQDKVEGLNAGADDYLVKPFRIEELMARLNALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +++   G+   + G++  L   E +ILEYLM +  + ++K ++   +Y 
Sbjct: 121 GFIKPEISCGSLKMDLTGKSVTLAGDLLELTAFEYQILEYLMRHHQQVISKQRLLDVLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N VE  IS+LRKKL +    +P+ + R  GY  +
Sbjct: 180 -EDREGDPNTVEVMISRLRKKLVSGGMNNPIVTIRGQGYRFN 220


>gi|225026937|ref|ZP_03716129.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353]
 gi|224955748|gb|EEG36957.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353]
          Length = 248

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D       ++   +  F           S   D++ ++  L        
Sbjct: 22  ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPD--MNGF 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L ++IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 80  SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 139

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +         +      + +     +  + GE   L   E  IL  L+++ G  V+  +
Sbjct: 140 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 199

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +F A++     +   + +  HI  LR+KL +       + +   +GY I
Sbjct: 200 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248


>gi|189499944|ref|YP_001959414.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
 gi|189495385|gb|ACE03933.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
          Length = 222

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + + D       ++  +++  ++      +      D+  ++  L   G   +
Sbjct: 3   ILIIEDESGIADFLREGLEEECFAVDVAHNGREGLSMALINEYDLLIVDWLLP--GLSGV 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  R  H+QVP+I ++    L   +   +SG +D + KP    E+LAR+    R   
Sbjct: 61  EVCRQFRKEHAQVPVIFLTAKGDLDDVIFGLESGANDYMKKPFAFEELLARIRVQLRLSG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + G + +          G+   L  +E  +LEYL+ NRG    +++I   ++ +
Sbjct: 121 SETVMMQAGGVEMNLAAHRVTCNGKDVSLTPKEFALLEYLLRNRGSVCTRSRIIEHVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + +V++ +++ LRKKL        +++ R +GY I
Sbjct: 181 H-FDADTSVIDVYVNFLRKKLDGAGCGALIETVRGVGYVI 219


>gi|332533790|ref|ZP_08409646.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036721|gb|EGI73184.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 225

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  IA         E FNS +           D+  ++  L       +
Sbjct: 6   ILIVEDEENIAEVLIAYAKQQNYETEHFNSGKGVVSFVKQNAVDLILLDLMLPDV--DGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           EL + IRA S +P+I ++        L   + G DD + KP   +E++AR+ A+ RR  +
Sbjct: 64  ELCKKIRAFSSLPIIMLTAKSEEIDRLQGLEIGADDYICKPFSPKEVIARIKAVLRRTSQ 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N       ++  D  +  + G+       E +I    +++ G+   +  I + +Y  
Sbjct: 124 PKTNIINHNNFQLHKDDYEARLNGKSIGFTAVEFKIFLLFISHVGRVFTREDIINNVYSD 183

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +  + N +++HI  +RKK+ + + G +P+ +   +GY  
Sbjct: 184 TTDISDRN-IDTHIKNIRKKINDIQAGLNPIAAVYSVGYKF 223


>gi|322833622|ref|YP_004213649.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321168823|gb|ADW74522.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 224

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D AL++        + G  ++     +  ++       D++ ++  L   GE  L
Sbjct: 3   ILVIEDNALLRHHLSVQLREMGHQVDAAEDAKEADYFLHEHAPDIAIVDLGLP--GEDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SLIRRWRSHQNNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVITLQPFQIDLSRRELTVNEQPIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + V+  + +LRKKL+ +   D + + R  GY  D
Sbjct: 180 PDAELRESHTVDVLMGRLRKKLQAEHPVDVITTVRGQGYRFD 221


>gi|284047340|ref|YP_003397680.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951561|gb|ADB54305.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 237

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++         DG  +                  D+  ++  L       L
Sbjct: 8   ILLVDDEQSIQALLSYPLRRDGYEVVQATDGREALARFEERPFDLVVLDVMLPQ--LDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R+ S VP+I ++        +   + G DD + KP   RE  +RV A  RR ++
Sbjct: 66  EVCRRLRSRSSVPIIMLTAKSEEIDKVVGLEIGADDYITKPFSMREFRSRVKAALRRSEL 125

Query: 122 SNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S +        +   +R+  D R   ++GE       E  IL  L  + G+   +  + +
Sbjct: 126 SRSAERDGGSLDVHELRIDPDKRTVSLRGEAITTTFVEFEILLTLARSPGRVFTRDMLLA 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++G      +   ++ HI  LR+K+ R+    + + + R +GY  
Sbjct: 186 RVWGDSAY-RDPRTIDVHIRHLREKIERDAKEPEYLFTVRGVGYRF 230


>gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
 gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
          Length = 256

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + D        +G +     S     E        D+  ++  L       
Sbjct: 5   ILIVEDEQDLLDTLEFNLQREGYATRRAASGRAGLEAAALEPAPDLVLLDLMLPD--ISG 62

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ R +RA      VP++ ++        +  F+ G DD V KP   RE++ RV AI R
Sbjct: 63  TEVCRQLRAAERTRSVPVVMLTARGEEVDRVVGFEVGADDYVTKPFSVRELMLRVRAILR 122

Query: 118 RLKV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R      + +R + G + V   G    V G    L   E R+L  L++  G+   +  + 
Sbjct: 123 RAGTKAEAPSRLQHGDLEVDVAGHRVWVGGNEIRLTALEFRLLATLLSRAGRVQTRDTLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G+    +    V++H+++LRKKL +      +++ R +GY  
Sbjct: 183 SDVWGMH-AGLTTRTVDTHVTRLRKKLGDAGS--YIETLRGVGYRF 225


>gi|16801128|ref|NP_471396.1| hypothetical protein lin2062 [Listeria innocua Clip11262]
 gi|16414563|emb|CAC97292.1| resD [Listeria innocua Clip11262]
 gi|313623105|gb|EFR93378.1| transcriptional regulatory protein ResD [Listeria innocua FSL
           J1-023]
          Length = 238

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 97/231 (41%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++  +   G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMP--GKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R +   P++ ++        +  F+ G DD + KP   RE++ RV A+ RR K S
Sbjct: 66  VCRELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125

Query: 123 NNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +                +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEEAAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235


>gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 220

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      +S   D+  ++  L  +    L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + +        ++G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216


>gi|332706802|ref|ZP_08426863.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332354686|gb|EGJ34165.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 225

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D       D    ++  +  +  + L  S   D+  ++  L       +
Sbjct: 3   ILLVEDDQRITDALAEDLTDQHYVVDVAHDGQIGKELVESFSYDLILLDVMLP--KMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R+     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  TLCRKLRSQGDLTPILMLTARDTISDKIVGLDAGADDYLVKPFDLGELSARIRALLRRGN 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     E   +R+     +   +  +  L  +E  +LE+ + +  +  ++ QI   ++ 
Sbjct: 121 TTLPPVLEWDSLRLDPSTCEVFYEDRLLSLSPKEYALLEFFLRHPRRVFSRAQILENLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            F+   EE  V++HI  LR+KL       D +++   LGY +
Sbjct: 180 SFERLPEEATVKAHIRGLRQKLEAAGAPSDLIETVYGLGYRL 221


>gi|317062130|ref|ZP_07926615.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313687806|gb|EFS24641.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 225

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G S++     E    L      D+  ++  +        
Sbjct: 8   ILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIMMP--KIDGW 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  SQVP+I ++        L  F+   D+ + KP + + ++A+V A+ RR   
Sbjct: 66  SVCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V     E G + + +  R+ ++   V  L  +E  +L + + N+G  +++ +I ++++G
Sbjct: 126 IVDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LRKK+    G + + + R  GY  +
Sbjct: 186 -WDYFGDSRTVDTHIKRLRKKI----GDNFIQTVRGFGYKFE 222


>gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 228

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   + +    +   +  +++  ++          A  D+  ++  +       L 
Sbjct: 5   LIADDDTSLLEQLREILASERYTVDTASNGIEAMDKLYDAVFDLVILDVMMPH--IDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L   IR     +P++ ++    ++  +   + G DD + KP    E+LARV A+ RR + 
Sbjct: 63  LLEQIRKGGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALLRRSEG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +   +R+ +  R     GE   L ++E  ILE+L+ N+ + V++  +   ++G 
Sbjct: 123 RHSAILDAKGLRLDTVSRKVTKDGEPIDLTQKEFLILEFLLYNKNRVVSRFSLAEHVWGD 182

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD     N ++ HI  LR+KL +      + + R +GY I+
Sbjct: 183 AFDPFTMSNFIDVHIKNLRRKLGDAGNDKIIQTVRSVGYMIE 224


>gi|218248212|ref|YP_002373583.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218168690|gb|ACK67427.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 250

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 105/232 (45%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSARE---DVSAIEAFLI 54
            ++++D  +++D       + G  +    +G  +L   + + +   E   D+  ++  L 
Sbjct: 21  ILVVEDEDVIRDMITIALEEQGYEVITASDGRTALSLLQDVATLGTESGFDLVVLDLMLP 80

Query: 55  GKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++R ++  VP++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  QV--NGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR   +N       +   I ++ +     V+GE   L  +E R+LE  M+   +  +
Sbjct: 139 ALIRRQDFNNVSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLIDQVWGA-DFLGDTKTVDVHIRWLREKLETDPSQPEYLITVRGFGYRF 249


>gi|164686356|ref|ZP_02210386.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM
           16795]
 gi|164601958|gb|EDQ95423.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM
           16795]
          Length = 227

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 107/227 (47%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
            ++IDD   + +        +G  ++ ++   FE + ++   + ++  ++  L       
Sbjct: 5   ILVIDDEMHIVELLKFNLEVNGYIVD-YSLDSFEGYHKAKELKPNLILLDWMLPN--ISG 61

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ + IR        P+I ++     +  +   + G DD + KP   +E+LAR+ ++ R
Sbjct: 62  IDVLKKIREDEDLKDTPVIMLTAKNMERDKVKGLEEGADDYITKPFGIKELLARINSVLR 121

Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R  ++ N+ E       IR+     +   + +   L  +E  +L+ L+ N+GK +++  +
Sbjct: 122 RYNMTTNKVEDVLTVKDIRMDLIKHEVTKKDKKIDLTIKEFDLLKLLLQNKGKVLSRNFL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G ++   E   V+ HI  LRKK+ N  G   +++ R +GY I
Sbjct: 182 LDKVWG-YEYFGETRTVDVHIRYLRKKIEND-GEKYIETIRGIGYKI 226


>gi|251798517|ref|YP_003013248.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546143|gb|ACT03162.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 228

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 10/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   ++D       ++G S+    + +  E +    +++V  +   ++      
Sbjct: 3   VILVVDDDTEIRDVIHVYLRNEGHSV--LEAGDGSEAIDLLVQQEVDLVILDVMMPRMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++    IR    VP+I +S        +     G DD V KP +  E++ARV A  RR K
Sbjct: 61  IKACMHIREQYSVPIIMLSAKEGDIDKIMGLSIGADDYVTKPFNPMELIARVKAQLRRQK 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +++     + +        ++G+V  L   E  IL+ L AN G+  +   I+
Sbjct: 121 MLTSKEGVHDQITIDELVIDVAKHFVSIRGQVVMLTPLEFAILKLLAANPGQVFSADTIY 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +++        +N V  HI  LR+KL  N    + + +   +GY +D
Sbjct: 181 ESVWKER-IGFSDNTVMVHIRNLREKLEINPRKPEYIKTVWGVGYKMD 227


>gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 248

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 99/233 (42%), Gaps = 21/233 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   V++        +G     +++G ++LE      ++ R D+  ++  +    
Sbjct: 17  ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKA----TAYRPDLVVLDIQMPR-- 70

Query: 58  EKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L   R IR      P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ 
Sbjct: 71  MDGLTAARRIRGAGDLTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALL 130

Query: 117 RRLKVS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR   +         ++      + +    R+    G    L R E  +LE  MA+  + 
Sbjct: 131 RRSSYAAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQV 190

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 LTREQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 242


>gi|319653929|ref|ZP_08008023.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394465|gb|EFV75209.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 238

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +    ++  ++         S   D+  ++  L  +    
Sbjct: 6   LLLVDDEQAILHMLCTILQREQFRNIDTASTAAQALERCRSYTYDLILLDVMLPDR--SG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++  +IR  +  P+  ++   +    L  F  G DD + KP +  E+ AR+ A  RR K
Sbjct: 64  FDICPLIRETTDAPIFFLTARSTDLDKLSGFALGADDYITKPFNPLEVAARIKAHLRRHK 123

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S         + G I++ +   +  V G+   LP +  ++L +L  +  +  +K+Q++ 
Sbjct: 124 GSQPVPVQTIYDFGRIKINTSAGEVTVSGKRIDLPAQVYQLLLFLSKHPNQLFSKSQLYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            ++G  +   E+N V  HI KLR+K+ +       + + R LGY  
Sbjct: 184 HVWGE-EGFGEDNTVMVHIRKLREKIESNPSSPCHIITVRGLGYKF 228


>gi|148654369|ref|YP_001274574.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566479|gb|ABQ88624.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 245

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D +++ +     F   G  +   +       +      D+  ++  L   G    
Sbjct: 4   ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLP--GLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117
            + R +   + VP++ ++        +   + G  D V KP    E+LARV AI R    
Sbjct: 62  SVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNER 121

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R   S+N    GP+++  + R    +     L  +E  +L  LM N G  +++  +   
Sbjct: 122 QRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G  D       ++ H+  LR+KL  +      + + R +GY  
Sbjct: 182 VWG-SDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225


>gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Rv]
 gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Ra]
 gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis F11]
 gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis H37Ra]
 gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis GM 1503]
 gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210]
 gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207]
 gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506]
 gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475]
 gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium
           tuberculosis H37Ra]
 gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis F11]
 gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis W-148]
 gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 230

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       + +S R D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPR--LDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R     +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 63  EVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 123 PEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 183 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 225


>gi|219683667|ref|YP_002470050.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621317|gb|ACL29474.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
          Length = 245

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      + S  + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVGDLEINEDSHDVTRAGQTIDLSSTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+ +    D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMI 238


>gi|15807407|ref|NP_296139.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460240|gb|AAF11967.1|AE002072_9 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 373

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 93/215 (43%), Gaps = 5/215 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       D G  ++  +S             D+  ++  L        
Sbjct: 6   ILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDF--DGG 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R +S +P+I ++   +++  +     G DD + KP H  E+LARV    R  + 
Sbjct: 64  DVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLR--QR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++     G + +    R    +GE   L  +E  IL  L+   G+  ++ +I   I+   
Sbjct: 122 TSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGR 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
                 NVV+ H++ LR KLR+  G+  + + R +
Sbjct: 182 LPEG-SNVVDVHMANLRAKLRDLDGYGLLRTVRGV 215


>gi|116513324|ref|YP_812230.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116092639|gb|ABJ57792.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 242

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 95/233 (40%), Gaps = 19/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +E     E           D+  ++  L  K    L
Sbjct: 5   ILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEECNPDLLILDLMLPKK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++        +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 63  EVAREVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 120 -------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                        +  +N  + G + +  D    E  GE   L  RE  +L Y+  +  +
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
            + +  +   ++G +D   +   V+  + +LR+K+ +      +  ++R +GY
Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234


>gi|116494543|ref|YP_806277.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191637982|ref|YP_001987148.1| Response regulator [Lactobacillus casei BL23]
 gi|227535480|ref|ZP_03965529.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631859|ref|ZP_04674890.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066090|ref|YP_003788113.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116104693|gb|ABJ69835.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712284|emb|CAQ66290.1| Response regulator [Lactobacillus casei BL23]
 gi|227186890|gb|EEI66957.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239526324|gb|EEQ65325.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438497|gb|ADK18263.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327382058|gb|AEA53534.1| hypothetical protein LC2W_1200 [Lactobacillus casei LC2W]
 gi|327385212|gb|AEA56686.1| hypothetical protein LCBD_1189 [Lactobacillus casei BD-II]
          Length = 242

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 22/238 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +   +   N+ + EE L     A +    I   L      
Sbjct: 3   LLMIEDNTSVAEMMAMFFQKEKWEV--VNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMD 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++ + IR  SQ VPLI ++   +    +   + G DD V KP     ++AR+ A++RR
Sbjct: 61  GMQVAKEIRKISQTVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 120

Query: 119 LKVSNNR--------------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMAN 163
            +V                   ET   ++ +  R+  + G+    L  +E  +L  L  +
Sbjct: 121 AEVGAEVGAEQTTSEPPDGFDVETDHFKLSTKTREAYLDGKQIEGLTPKEFDLLHTLSKS 180

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 181 PKQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKVE-KVGPQIIQTVWGVGYKFD 236


>gi|329929102|ref|ZP_08282895.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328936885|gb|EGG33317.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + + +   +    +G  +    + + EE L+  A  D   +   ++      +
Sbjct: 5   ILLVEDDSSIGEMVESYLTMEGFQV--VLAKDGEEALERFAERDYDLVLLDMMLPKISGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + IR  S VP++ +S              G DD + KP    E+ ARV A  RR+  
Sbjct: 63  DFLKKIREKSHVPVLIVSAKDGEVDKALGLGFGADDYITKPFSMVELTARVKAAIRRVTA 122

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    N       + +  D       G+   L  +E +IL+  M N  K   K  I
Sbjct: 123 YVIAPPTEQNKIIRVHELEMDLDHLTVTKNGQEIKLTAKELQILKLFMTNPKKVFTKQHI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           F++++   D   +ENV+  H+S+LR K+ +       + +   +GY +
Sbjct: 183 FTSVWN-DDYFGDENVINVHMSRLRDKIEDQPSDPQYIKTLWGIGYRL 229


>gi|228996687|ref|ZP_04156324.1| Transcriptional regulatory protein srrA [Bacillus mycoides
           Rock3-17]
 gi|228763006|gb|EEM11916.1| Transcriptional regulatory protein srrA [Bacillus mycoides
           Rock3-17]
          Length = 247

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +  +++  ++ +    L+ + + D   I   ++  G+  +
Sbjct: 16  ILIVDDEDRIRRLLKMYLEREQYTIDEADNGDT--ALEKALQNDYDLILLDIMMPGKDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 74  EVCKGIREKKATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 133

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D       G+   L  +E  +L +L     K   + Q
Sbjct: 134 TTFFTQDTTTKDIIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
           +   ++  ++   +   V++H+ +LR+KL  K       + +   +GY  + 
Sbjct: 194 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSADAAKMIVTVWGVGYKFEV 244


>gi|300786954|ref|YP_003767245.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796468|gb|ADJ46843.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 223

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +       F ++G + +   S        +S   D + ++  L        
Sbjct: 3   LLIVEDEGYMAKLLGRGFAEEGYATDIAESGSQALVTAASMEHDAAILDVMLPDV--DGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   +R     VP++ ++   S+   +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 61  ELCARLRQSGWHVPVLMLTARDSVSDRVKGLDAGADDYLCKPFSFVELCARVRALTRRAG 120

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +   R + G +R+    R          L   E  +LE LM ++ + + +++I   +
Sbjct: 121 IGRDVAVRLQAGSLRLDPLSRRVWSGPSEVYLSATEFTLLELLMHHQDQVLTRSRILDQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +   V  NVV+ ++  LR K    +G D +++ R +GY +
Sbjct: 181 WG-YRYPVTSNVVDQYVRYLRHK----VGQDLIETVRGVGYRL 218


>gi|228908952|ref|ZP_04072782.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850674|gb|EEM95498.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 226

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEYYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|116873390|ref|YP_850171.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742268|emb|CAK21392.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 238

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++  +   G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMP--GKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R +   P++ ++        +  F+ G DD + KP   RE++ RV A+ RR K S
Sbjct: 66  VCRELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125

Query: 123 NNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +                +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEEATGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221
              ++  ++   +   +++H+ +LR+KL +  +     + +   LGY  +
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234


>gi|255284237|ref|ZP_05348792.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255265190|gb|EET58395.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 231

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++        + +      +  + D++ ++  L        
Sbjct: 5   ILIVDDEREIADVIGLYLKNENFEAVKCYNGKDALAAVNEEKPDLAILDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + + IR     P+I ++        ++    G DD + KP +  E++ARV A  RR   
Sbjct: 63  TILQKIRETYTFPVIMLTAKTEYMDKINGLTLGADDYIEKPFNPLELIARVKAQLRRYTK 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K   +  + G + +     +         L   E  IL  L  NRG+ ++  Q+F
Sbjct: 123 YNDGGKPQEDIIDFGGLLMNRSTHECTFNERELTLTPIEFDILWILCENRGQVISSEQLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             ++         N V  HI  LR+K+   +G  + + +   +GY ++
Sbjct: 183 EQVWHEKYYKQSNNTVMVHIRHLREKMGGPMGKTEFIKTVWGVGYKVE 230


>gi|168752198|ref|ZP_02777220.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757600|ref|ZP_02782607.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4401]
 gi|195940656|ref|ZP_03086038.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. EC4024]
 gi|261227539|ref|ZP_05941820.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254637|ref|ZP_05947170.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283144|ref|YP_003499962.1| Heavy metal response regulator [Escherichia coli O55:H7 str.
           CB9615]
 gi|188013893|gb|EDU52015.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4113]
 gi|189355396|gb|EDU73815.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4401]
 gi|290763017|gb|ADD56978.1| Heavy metal response regulator [Escherichia coli O55:H7 str.
           CB9615]
 gi|320191940|gb|EFW66587.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. EC1212]
 gi|320641815|gb|EFX11203.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. G5101]
 gi|320668529|gb|EFX35356.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. LSU-61]
 gi|326344882|gb|EGD68629.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. 1125]
          Length = 260

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 230

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E  ++        +S   D+  ++  L        
Sbjct: 6   ILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPE--LDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   D G DD + KP    E+LARV A +RR + 
Sbjct: 64  EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            + +    R      +V  L RRE  +L  LM N G  V +  + S 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++E  E NVV+ +I  LR K+  +     + + R LGY +
Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVM 226


>gi|304406308|ref|ZP_07387965.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344892|gb|EFM10729.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +     F   G + E  +  E       +   D+  ++  L   G   L
Sbjct: 4   ILIIEDEIPIAELERDYFELHGFTAELAHDGEEGTAKALAGGYDLIILDLNLP--GADGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   VP++ +S        +  F  G DD V KP    E++AR  A   R + 
Sbjct: 62  EVCRSIRAQLDVPILIVSARDEEIDKIRGFGLGADDFVTKPFSPNELIARAKAHLSRYER 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             NR           + +    R   V G    L  RE  +L ++ A+  +  +KT++F 
Sbjct: 122 FANRTAEPEQIRIRELTIDKTARRVYVHGNEVVLTTREFDVLAFMAAHPNRVFSKTELFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++G FD A +   V  HI ++R+K+         +++    GY  
Sbjct: 182 RLWG-FDSAGDIATVAVHIRRVREKIEAVPSNPQFIETVWGAGYRF 226


>gi|293416465|ref|ZP_06659104.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185]
 gi|291431821|gb|EFF04804.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185]
          Length = 219

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQCEPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|218898271|ref|YP_002446682.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218542022|gb|ACK94416.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 224

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLQ 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|167758624|ref|ZP_02430751.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
 gi|167663820|gb|EDS07950.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  E           D+  ++  L   G    
Sbjct: 4   ILIVEDEEAIADLEKDYLELSGFKVEVANDGETGLKKALGEEFDMFILDLMLP--GIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICRQIRDKKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +N   E   +++ +  R   V  E      +E  +L +L ++      K ++F
Sbjct: 122 LTGSAVEANKVIEIRGLKIDTTARRVWVNEEERTFTTKEFDLLTFLASHPNHVYTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 REIWDM-ESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRF 227


>gi|126696581|ref|YP_001091467.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9301]
 gi|112818638|gb|ABI23442.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126543624|gb|ABO17866.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9301]
          Length = 242

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   ++         +G  +  F + L   +++ +  ++DV  I   L+  G   
Sbjct: 14  ILLVEDDKSIRLTVSETLSSEGFRVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLNG 73

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL R IR      P++ +S   +    +   + G DD + KP    E++AR  A+ RR 
Sbjct: 74  LELCRKIRNDEDYTPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALIRRS 133

Query: 120 KV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           K        S+   E   I++F +        +   L  +E ++LE  M N  +  ++  
Sbjct: 134 KRNKKNIEKSHTVIEFNHIKMFLEECRVTSFDKEITLSPKEFKLLELFMKNPKRVWSRDL 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           I   I+ + D   +   V+ H+  LR+KL  +      + + R  GY  
Sbjct: 194 ILEKIWEI-DFIGDTKTVDVHVRWLREKLEEDPSAPKFLKTVRGFGYKF 241


>gi|325684430|gb|EGD26596.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 241

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   V       F  +G   +  ++  E  E  Q+  R D   I   L    +  
Sbjct: 3   ILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPR-DFDIITLDLNLPKKDG 61

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + IR  S+ VP+I ++   S    +     G DD V KP     ++AR+ A++RR+
Sbjct: 62  IQVAKEIRRISETVPIIMVTARDSESDQVLGLGVGADDYVTKPFSPIALIARIKALHRRV 121

Query: 120 KVSNNR-------------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            +                  ET  IR+    R+          L  +E  +L  +     
Sbjct: 122 MLEGQPRDLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKPK 181

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++G ++   EE  V++HI KLR+KL  K G   + +   +GY  D
Sbjct: 182 QVFSREQLLELVWG-YEYFGEERTVDAHIKKLRQKLE-KSGPQIIQTVWGVGYKFD 235


>gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931]
          Length = 234

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +    E ++ +  E    I   ++  G    
Sbjct: 7   LLVVDDEFNILELLATSLRFAGFEV--VTAGNGREAIEKAENEQPDLIVLDVMMPGMDGF 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   +  P++ ++   + +  +    +G DD V KP    E++AR+ AI RR +
Sbjct: 65  EVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 124

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            + +  D  +  +  E   L   E  +L YLM N  + ++K QI   
Sbjct: 125 NAQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDH 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSI 220
           ++  +D   + ++VES+IS LR+K+ N  +     + +KR +GY I
Sbjct: 185 VW-EYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMI 229


>gi|229826144|ref|ZP_04452213.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC
           49176]
 gi|229789014|gb|EEP25128.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC
           49176]
          Length = 257

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +   N       +  S  ED+S     ++  G   L
Sbjct: 27  ILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKS-EEDISLAILDIMMPGMDGL 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + IR  S +P+I +S   +    +    +G DD V KP +  E+ ARV A  RR   
Sbjct: 86  SMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRFTE 145

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                       +   E GP+ +    R+     +   L   E  IL  L +N G+  + 
Sbjct: 146 FNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVFST 205

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             IF+ ++         N V  HI +LR+K+  +      + +   +GY I+
Sbjct: 206 DDIFTRVWNEKAFEGN-NTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIE 256


>gi|330818169|ref|YP_004361874.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370562|gb|AEA61918.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 233

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     E           D+  ++  L  +    +
Sbjct: 16  ILLVEDDKMIAEGVRKALKADGFAVDWVQDGEAALTAIGGETYDLMLLDLGLPKR--DGV 73

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +R+    +P++ I+   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 74  DVLRTLRSRGHALPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 133

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 134 GRSESVIRHGALTLDPASHQVTLDGAAVALSAREFALLEALLARPGAVLSKSQLEEKMYG 193

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 194 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 229


>gi|322835521|ref|YP_004215547.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
 gi|321170722|gb|ADW76420.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 240

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  +   ++ +    +    +    A+   L+  G   L
Sbjct: 7   ILIVEDDGDIAELLSLHLRDEGYEIT--HAADGNLGVAHLEKGGWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  R  ++  P+I IS   S    +   + G DD + KP    E++ARV A++RR  
Sbjct: 65  EICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                LK+         + +    RD  +  +   L  RE  +L +   N GK  ++  +
Sbjct: 125 AMSRNLKMDAGTLSFSGLVIDPIARDVMLNHQSVELTPREFDLLYFFAKNPGKVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G ++    E+ V +HI++LR K+  N    + + +    GY  
Sbjct: 185 LNQVWG-YEHEGYEHTVNTHINRLRIKIETNPAEPERILTVWGKGYKF 231


>gi|270261003|ref|ZP_06189276.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044487|gb|EFA17578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 237

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  +   ++ +  + +    +    A+   L+  G   L
Sbjct: 7   ILIVEDDGDIAELLQLHLRDEGYDIS--HAADGNQGMAMLEQGGWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  R  ++  P+I IS   S    +   + G DD + KP    E++ARV A++RR  
Sbjct: 65  EICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L++         + +    R+ ++  +   L  RE  +L +   + GK  ++  +
Sbjct: 125 AMSRNLRMDAGTLSFDGLTIDPIAREVQLNRQPIDLTPREFDLLYFFARHPGKVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+ +       + +   +GY  
Sbjct: 185 LNQVWG-YQHEGYEHTVNTHINRLRIKIESNPAEPLRILTVWGMGYKF 231


>gi|306841275|ref|ZP_07473986.1| Protein petR [Brucella sp. BO2]
 gi|306288677|gb|EFM60008.1| Protein petR [Brucella sp. BO2]
          Length = 227

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 135/225 (60%), Positives = 168/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGTDGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|260588461|ref|ZP_05854374.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331082261|ref|ZP_08331388.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541335|gb|EEX21904.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330403055|gb|EGG82620.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 225

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 105/224 (46%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVL 61
           +++DD + ++          G  +    + + E  L    ++ D+  I   ++       
Sbjct: 7   LVVDDESRMRKLVSDFLTKQGYEV--LEAGDGEAALDIFYKDKDIQLIILDVMMPKLDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S++P+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR   
Sbjct: 65  GVCREIRKDSKIPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTSA 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G I +        + G+   L  +E  +L Y + N+G  +++ +I ++++ 
Sbjct: 125 IGSDDILSAGGIEINKTSHTASIDGKTMDLSYKEFELLTYFLENQGIALSREKILNSVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +   +++H+ KLR K+  K   + + +   +GY  + +
Sbjct: 185 -YDYFGDARTIDTHVKKLRSKIGAKG--EYIKTIWGMGYKFEVS 225


>gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 250

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-------EGFNSLEFEEWLQSSAREDVSAIEAFLI 54
            ++++D  +++D       + G  +          N L+    L + +  D+  ++  L 
Sbjct: 21  ILVVEDEDVIRDMITIALEEQGYEVITASDGRTALNLLQDVATLGTESGFDLVVLDLMLP 80

Query: 55  GKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R++R ++  VP++ +S   S    +   + G DD + KP   RE++AR  
Sbjct: 81  QV--NGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 138

Query: 114 AIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR   +N       +   I ++ +     V+GE   L  +E R+LE  M+   +  +
Sbjct: 139 ALIRRQDFNNVSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + Q+   ++G  D   +   V+ HI  LR+KL  +    + + + R  GY  
Sbjct: 199 REQLIDQVWGA-DFLGDTKTVDVHIRWLREKLETDPSQPEYLITVRGFGYRF 249


>gi|162450321|ref|YP_001612688.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161160903|emb|CAN92208.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 228

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +     +    +G ++             ++   D   ++  +   G   +
Sbjct: 5   LLLIDDDTRLHALLASYLEQNGFAVTVACDGARGLLALAAGTFDAVLLDVMMP--GMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  S +P++ ++        +   + G DD + KP   RE+LAR+ A+ RR   
Sbjct: 63  EVVRRIRQKSSMPILMLTARGDEADRVVGLEIGADDYIAKPFSPRELLARLRAVLRRATP 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +  R   G I +   GR   V G+   L   E  IL  L    G+ VA+  +     G
Sbjct: 123 DAAGERIVAGDIAIDVPGRVVTVSGKPTDLTGIEFDILVALARRAGRVVAREALLEEA-G 181

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             D  V    V+ HIS LR+KL  +      + + R +GY +
Sbjct: 182 RGDVNVGGRTVDVHISHLRQKLSDDPRSPRLIKTVRGVGYVL 223


>gi|83649242|ref|YP_437677.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83637285|gb|ABC33252.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 219

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG          +++   S E         +  +  ++  L       L
Sbjct: 3   ILLVEDDELLADGIQTSLSQQANTVDWVASGEAALHALKLEQFHLVILDLGLPD--IDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + +R     +P++ +S    +Q  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  TVLKRLRDRGDEIPVLILSARDQVQDRVKGLDAGADDYLLKPFDVSELKARLRALSRRGS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   +   IR+           E   L RRE  +L  L ++RG+ ++K Q+   +YG
Sbjct: 121 GNAHPEIQLANIRILPSSYQVYKSAEEVRLSRREYALLYELASHRGRVLSKDQLEELVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ V  N +E HI  LRKKL      D + + R +GY I+
Sbjct: 181 WSDD-VSSNTMEVHIHNLRKKL----NPDLIKTVRGMGYMIE 217


>gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 228

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L    + D+  ++  +       +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDIMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   V+G    L  +E  IL+ L  N+G  ++  +I+
Sbjct: 123 YNTHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVW-KDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|251788826|ref|YP_003003547.1| DNA-binding transcriptional regulator BaeR [Dickeya zeae Ech1591]
 gi|247537447|gb|ACT06068.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 243

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G         E  E         +  ++  L   G   L 
Sbjct: 17  LIVEDEPKLAQLLVDYLQASGYRTHWLTQGEEVEPWVREHPCQLILLDLMLP--GRDGLT 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I ++        L   + G DD + KP   RE++ARV  + RR +  
Sbjct: 75  LCRAIRGFSNVPIIMVTARSDEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 134

Query: 123 NNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + +  +       G    L   E R+L+ L A  G+  ++ Q+   +Y 
Sbjct: 135 HEPLPNDALPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 194

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 195 DY-RVVTDRTIDSHIKNLRRKLEMFDRETSFIRTVYGIGYRWE 236


>gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 241

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 104/228 (45%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +           L ++ + D+  ++  L        
Sbjct: 12  LLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPD--MDGF 69

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA    +P++ ++    ++  ++   +G DD V KP    E++AR+ AI RR K
Sbjct: 70  TVTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 129

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++         + +  +  +    G++  L   E ++L YLM N G+ V+K+QI   +
Sbjct: 130 HGSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-----FDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LR+KL             + ++R +GY +
Sbjct: 190 W-EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLL 236


>gi|260548814|ref|ZP_05823036.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407982|gb|EEX01453.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 228

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   +           G  +  F+  +         + ++  ++  +       L +
Sbjct: 6   LVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPR--MDGLTI 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+   
Sbjct: 64  CRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLERKA 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I      
Sbjct: 124 EPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDSF 182

Query: 184 AVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
            V + V++SHI  LR+K+          + + +   +GY  ++
Sbjct: 183 DVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFEY 225


>gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
 gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
          Length = 252

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 102/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +           L ++   D+  ++  L        
Sbjct: 30  LLVVDDEPNIRDLLASSLRFAGFEVITAADGASAFHLATTENPDLIVLDVMLPD--MDGF 87

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A +++P++ ++    ++  +     G DD V KP    E++AR+ AI RR  
Sbjct: 88  TVTRRLRNAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 147

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V +       + +  D  +    G    L   E ++L YLM N G+ V+K QI   ++
Sbjct: 148 DSVDDGILRIADLELDEDAYEVRRDGVELELSPTEFKLLRYLMINEGRVVSKMQILDHVW 207

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +D   +  +VES+IS LR+KL  ++   D + ++R +GY +
Sbjct: 208 -EYDWEGDAAIVESYISYLRRKLAVHEDSKDLIHTRRGVGYML 249


>gi|86607675|ref|YP_476437.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556217|gb|ABD01174.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 230

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +          +G  +   +              D+  ++  L   G   L
Sbjct: 11  ILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLP--GISGL 68

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    VP++ ++    +       D+G DD V KP   +E+L+R+    R+ +
Sbjct: 69  EICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPR 128

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S + +     + +    R+         L  +E  +L YLM +  + + + QI   ++G
Sbjct: 129 RSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N++E +I  LR K+        + + R +GY +
Sbjct: 189 C-DFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVL 228


>gi|322513689|ref|ZP_08066784.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
           25976]
 gi|322120497|gb|EFX92404.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
           25976]
          Length = 229

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED----VSAIEAFLIGK- 56
            ++++D   +++            +     ++ E++  +  + D    +  ++  L G+ 
Sbjct: 5   ILIVEDEKAIREMIALFLLQQNYQV-----IDAEDYQSAVKKLDEKPKLILLDWMLPGRS 59

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G + ++  +     +Q+P++ ++   S    +   ++G DD V KP   + ++AR+ A+ 
Sbjct: 60  GIQFIQYLKKSEETTQIPILMLTARSSEDDCITCLNTGADDYVTKPFSPKVLIARIEALL 119

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR   +N+      + +  + +    Q +   L   E ++L + M +  K  ++ Q+   
Sbjct: 120 RRTYQNNDVINIDDLILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDF 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  VE+  V+S+I +LRK L        V + R  GY  
Sbjct: 180 VWGN-DIYVEDRTVDSYIRRLRKSLEPCGFERYVQTVRGSGYRF 222


>gi|313906136|ref|ZP_07839485.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469023|gb|EFR64376.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 229

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 86/230 (37%), Gaps = 17/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++I+D   + +        D + L GF      + E     +  ED       L+  G 
Sbjct: 4   ILIIEDEESIAE-----LEKDYLELSGFEVAIETDGESGRDRALEEDFDMFILDLMLPGI 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               + + IR     P+I +S        +     G DD + KP    E++ARV A   R
Sbjct: 59  DGFAICKQIREKKNTPIIIVSAKKDDIDKIHGLGLGADDYMTKPFSPSELVARVKAHLAR 118

Query: 119 L-------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +  N+  E   IR+    R   V  E      +E  +L +L  N      K 
Sbjct: 119 YERLVSSGQPKNDVIEIRGIRIDKTARRVWVNKEEKNFTNKEFDLLTFLAENPNHVFTKE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++F  I+ + D   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 179 ELFQKIWNM-DSVGDIATVTVHIKKIREKIEYNTAKPQYIETIWGVGYRF 227


>gi|262371046|ref|ZP_06064368.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262313932|gb|EEY94977.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 228

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +  F+  +      +  +  +  ++  +       L
Sbjct: 4   IMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQEAYDSFTQRKPSLMILDLMVPR--MDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL+ 
Sbjct: 62  TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLER 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I    
Sbjct: 122 KAEPEDQSLFRMDKAQQRIWYQQKPLNLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPD 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
              V + V++SHI  LR+K+ +        + V +   +GY  ++
Sbjct: 181 SFEVADRVIDSHIKNLRRKISDAAETGNRHEWVQAVYGVGYRFEY 225


>gi|254720772|ref|ZP_05182583.1| Protein petR [Brucella sp. 83/13]
 gi|265985830|ref|ZP_06098565.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|264664422|gb|EEZ34683.1| two component transcriptional regulator [Brucella sp. 83/13]
          Length = 227

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 135/225 (60%), Positives = 168/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERYKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGTDGTQLGPIRVFSDGRDPQINGINFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|182438316|ref|YP_001826035.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466832|dbj|BAG21352.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 229

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLP--GRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|169826282|ref|YP_001696440.1| two-component response regulator; MrsR2 protein [Lysinibacillus
           sphaericus C3-41]
 gi|168990770|gb|ACA38310.1| probable two-component response regulator; probable MrsR2 protein
           [Lysinibacillus sphaericus C3-41]
          Length = 240

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD A + +        +G   + + +    +   S      D+  ++  L     +
Sbjct: 6   ILVVDDEADLANLLKVSLQKEGYK-QIYTAGSIHDAWTSFQQTSPDIVLLDVMLPD--GE 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
             +L R IR  S VP++ +S        +     G DD + KP   +E+  RV A  RR 
Sbjct: 63  GYDLCRRIREISHVPVLFMSAKNEEIDKILGLAIGGDDYITKPFSPKEVAYRVKAQLRRV 122

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                     ++    + GP ++ +D  +    G +  L  +E  ++   M N  + ++K
Sbjct: 123 GYQTHETTSGMAEKTIQVGPFQLNADETEVHKDGILLELTAKEIGLMACFMHNPHRILSK 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +F  ++G  D    +N V  HI +LR+K+         + + + LGY  
Sbjct: 183 ETLFERVWGE-DFFGSDNTVMVHIRRLREKIEQDASKPIFITTVKGLGYKF 232


>gi|258516208|ref|YP_003192430.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779913|gb|ACV63807.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 227

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +E                 D+  ++  L       +
Sbjct: 6   ILIIEDEVKISRFIQLELEHEGYIVEKEKDGRAGLEKALHGNHDLIILDVMLPS--LNGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S++P+I ++    +   +   D G DD + KP    E+LAR+   ++  +V
Sbjct: 64  EILRRLRQVSEIPVIMLTAKDDVMDKVMGLDFGADDYLTKPFAIEELLARIRVAFKHKRV 123

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +    + G +++           E   L ++E  +L+ LM N    + +  I   ++
Sbjct: 124 QHEKSDVIQIGNLKLDLYKYTVSFNNEPIDLTKKEFDLLKLLMVNNEIVLTRDTILEKVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++ A + N+V+ ++  LR K+ ++     + + R +GY +
Sbjct: 184 G-YNYAGDTNIVDVYVRYLRIKIDDRYHQKFIHTVRGVGYQL 224


>gi|73539891|ref|YP_294411.1| DNA-binding response regulator CreB [Ralstonia eutropha JMP134]
 gi|72117304|gb|AAZ59567.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 226

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D + + D        DG+++E      +  E L++ A  D+  ++  L       
Sbjct: 6   ILVIEDESAIADTIDYALSTDGMAVERCALGGDALERLRTQA-FDLVILDVGLPD--LSG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ R +R  + VP+I ++        +   + G DD V KP   RE+ ARV  I RR  
Sbjct: 63  FEVCRTLRTFTDVPVIFLTARHDEIDRVVGLEIGADDYVVKPFSPRELAARVRVILRRTA 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +     A      V +DG      G    L R E R+L  ++ + G+  ++ Q+   ++
Sbjct: 123 RQPVAEPASQSVFTVDNDGARVAFHGHWLELTRYEYRMLALMLRHPGRIYSRAQLMDEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
               + ++   V++HI  +R KLR      DP+ + R +GYSI+
Sbjct: 183 HDAPDTID-RTVDTHIKTVRAKLRALDAASDPIRTHRGMGYSIE 225


>gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 233

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 10  ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPN--MDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 68  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 128 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|229110642|ref|ZP_04240207.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228672815|gb|EEL28094.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 236

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLQ 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 74  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|110803691|ref|YP_699201.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110684192|gb|ABG87562.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 223

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 13/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEK 59
           ++++D   ++         D    EGFN LE    EE L+  +   V      ++     
Sbjct: 6   LIVEDEIRIR-----FLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L + R IR  S  P+I ++     +  L  ++ G DD + KP   + +LA+  A+ RR 
Sbjct: 61  GLAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKSKALLRRT 120

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N  N  +   + +     + ++ GE   L  +E  +L YL +N G  +++ +I   +
Sbjct: 121 GTLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   +   V+++I +LR+KL +K   + + + R  GY  + 
Sbjct: 181 WG-YDYFGDIRTVDTNIKRLREKLLDK--ANYIATVRGSGYKFEV 222


>gi|51597134|ref|YP_071325.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis IP 32953]
 gi|153949110|ref|YP_001400191.1| BaeR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|170023569|ref|YP_001720074.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis YPIII]
 gi|186896226|ref|YP_001873338.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590416|emb|CAH22056.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|152960605|gb|ABS48066.1| transcriptional regulatory protein BaeR [Yersinia
           pseudotuberculosis IP 31758]
 gi|169750103|gb|ACA67621.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186699252|gb|ACC89881.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
          Length = 239

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +              +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLP--GSDGIT 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR  + 
Sbjct: 73  LCREIRRFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +  P+ +         QG +  L   E R+L+ L +  G   ++ Q+ + +Y  +
Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              V +  ++SHI  LR+KL    G  P + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLELLDGEKPFIRAVYGMGYRWE 232


>gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus uberis 0140J]
 gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus uberis 0140J]
          Length = 240

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G   +          L  S   D   ++  L       +
Sbjct: 5   ILLVDDEEHILRLLDYHLKKEGYETDLAEDGRTALKLAESEHYDFILLDIMLPQ--LDGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ + IR+     P++ +S        +   + G DD + KP   RE++AR+ AI RR  
Sbjct: 63  EVCKRIRSKGNKTPIMMVSAKGEEFDKVLALELGADDYMTKPFSPRELIARLKAILRRTE 122

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    +         + ++ +  +     ++  L  +E  +L YL+ +    + + 
Sbjct: 123 KTEEEDTTGLPEEYWTINHLVIYPERHEVYKNQKLLNLTPKEFELLLYLVKHPNMTLTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 183 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDDPKKPVFIKTIRGYGYKF 231


>gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
          Length = 232

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G +L      E  + L  +  +    I   L+      +
Sbjct: 4   ILLVEDELKIARFLQLELTHEGYNLTVAT--EGRDGLLKAMDDKYDLIILDLMLPNLSGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R +RA+    P+I ++    +   +   D G DD + KP    E+LAR+  I  R  
Sbjct: 62  EICRRLRANKITTPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKILSRQV 121

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K      + G I +  +      + E   L ++E  +LEYLM N+   + + QI 
Sbjct: 122 VISETKEREAVIKAGKITLDKNTYTAHFEDEEISLTKKEFELLEYLMINKNIVLTREQIV 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D   E NV + +I  LR K+  K     + + R +GY  
Sbjct: 182 SNVWG-YDYESETNVTDVYIRYLRSKIDQKYDTHYIRTVRGIGYQF 226


>gi|316934907|ref|YP_004109889.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602621|gb|ADU45156.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 224

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLP--KMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +    R +S+ +P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +        G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELSCGPVVLDTRTGRVSANGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL    G D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKL----GVDIIQTVRGLGYLL 216


>gi|17988502|ref|NP_541135.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23500855|ref|NP_700295.1| transcriptional regulator [Brucella suis 1330]
 gi|62317958|ref|YP_223811.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941]
 gi|83269935|ref|YP_419226.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|163845458|ref|YP_001623113.1| hypothetical protein BSUIS_B1367 [Brucella suis ATCC 23445]
 gi|225686886|ref|YP_002734858.1| protein petR [Brucella melitensis ATCC 23457]
 gi|254691610|ref|ZP_05154864.1| Protein petR [Brucella abortus bv. 6 str. 870]
 gi|254699234|ref|ZP_05161062.1| Protein petR [Brucella abortus bv. 2 str. 86/8/59]
 gi|256015899|ref|YP_003105908.1| transcriptional regulator, OmpR family [Brucella microti CCM 4915]
 gi|256042867|ref|ZP_05445813.1| Protein petR [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112176|ref|ZP_05453097.1| Protein petR [Brucella melitensis bv. 3 str. Ether]
 gi|256256797|ref|ZP_05462333.1| Protein petR [Brucella abortus bv. 9 str. C68]
 gi|256261977|ref|ZP_05464509.1| flagellar transcriptional regulator ftcR [Brucella melitensis bv. 2
           str. 63/9]
 gi|260544143|ref|ZP_05819964.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260564104|ref|ZP_05834589.1| flagellar transcriptional regulator ftcR [Brucella melitensis bv. 1
           str. 16M]
 gi|260757241|ref|ZP_05869589.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260763734|ref|ZP_05876062.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883045|ref|ZP_05894659.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|265989302|ref|ZP_06101859.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993602|ref|ZP_06106159.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|294852969|ref|ZP_06793641.1| flagellar transcriptional regulator ftcR [Brucella sp. NVSL
           07-0026]
 gi|297250150|ref|ZP_06933851.1| flagellar transcriptional regulator ftcR [Brucella abortus bv. 5
           str. B3196]
 gi|306845420|ref|ZP_07477994.1| Protein petR [Brucella sp. BO1]
 gi|75505045|sp|Q576I4|FTCR_BRUAB RecName: Full=Flagellar transcriptional regulator ftcR
 gi|81846997|sp|Q8FUS8|FTCR_BRUSU RecName: Full=Flagellar transcriptional regulator ftcR
 gi|81850829|sp|Q8YDL7|FTCR_BRUME RecName: Full=Flagellar transcriptional regulator ftcR
 gi|123740838|sp|Q2YJF8|FTCR_BRUA2 RecName: Full=Flagellar transcriptional regulator ftcR
 gi|17984294|gb|AAL53399.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23464520|gb|AAN34300.1| transcriptional regulator [Brucella suis 1330]
 gi|62198151|gb|AAX76450.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941]
 gi|82940209|emb|CAJ13265.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|163676181|gb|ABY40291.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|225642991|gb|ACO02904.1| Protein petR [Brucella melitensis ATCC 23457]
 gi|255998559|gb|ACU50246.1| transcriptional regulator, OmpR family [Brucella microti CCM 4915]
 gi|260097414|gb|EEW81288.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260151747|gb|EEW86840.1| flagellar transcriptional regulator ftcR [Brucella melitensis bv. 1
           str. 16M]
 gi|260674151|gb|EEX60972.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260677349|gb|EEX64170.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872573|gb|EEX79642.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|262764472|gb|EEZ10504.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|262999971|gb|EEZ12661.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263091461|gb|EEZ15997.1| flagellar transcriptional regulator ftcR [Brucella melitensis bv. 2
           str. 63/9]
 gi|294818624|gb|EFG35624.1| flagellar transcriptional regulator ftcR [Brucella sp. NVSL
           07-0026]
 gi|297174019|gb|EFH33383.1| flagellar transcriptional regulator ftcR [Brucella abortus bv. 5
           str. B3196]
 gi|306274163|gb|EFM55979.1| Protein petR [Brucella sp. BO1]
 gi|326411304|gb|ADZ68368.1| protein PetR [Brucella melitensis M28]
 gi|326554593|gb|ADZ89232.1| protein PetR [Brucella melitensis M5-90]
          Length = 227

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 135/225 (60%), Positives = 168/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|148265316|ref|YP_001232022.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146398816|gb|ABQ27449.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   E     +           D+  ++  L   G + L
Sbjct: 5   ILIVEDEEKLAALLADYLKQSGFDSEWLADGQAVVPWVKRHGPDLILLDLMLP--GRRGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR+ S VP+I I+        L   + G DD + KP   RE++ARV ++ RR   
Sbjct: 63  DICKEIRSFSDVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKSLLRRTG- 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               A    + + +      + G V  L   E ++L +L +N G+  +++Q+   IY   
Sbjct: 122 GRLTASVQGLILDTSRYQATLHGHVLDLTVVEFKLLHFLFSNPGQIYSRSQLMHRIY-PD 180

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  V +  ++SH+ KLRKK+       + + S   +GY  +
Sbjct: 181 ERIVSDRTIDSHVKKLRKKISLAAPDQELIHSVYGIGYKFE 221


>gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 221

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 10/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKVL 61
           +++DD   +++   A         E F  LE E+ LQ+  +      +   L+  G    
Sbjct: 5   LVVDDDPAIREVLAAYLAR-----ERFEVLEAEDGLQALEQAPGADLVILDLMLPGMDGW 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R     +P++ ++     +  +  F+ G DD V KP   RE++ARV A+ RR+ 
Sbjct: 60  RVAQELRRDWPDLPILMLTARGEEEERVRGFELGADDYVTKPFSPREVVARVRALLRRVG 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +     GP+ +    R+  ++G+   L R E  +L  L  + G    + ++   ++G 
Sbjct: 120 LKDE-LVYGPLVIRPRAREVLLEGQPVALSRLEFDLLLTLARHPGMVFTRERLLERVWGP 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             E V+  VV+ H++ LRKKL +       +++ R +GY  
Sbjct: 179 GFEGVD-RVVDVHVALLRKKLGDDAEHPRFIETVRGVGYRF 218


>gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
 gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
          Length = 237

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + +    L +    ++  ++  +       +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDIMMPKV--DGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123

Query: 122 --SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             SNN  +         + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230


>gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 243

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  +E            S    D+  ++  L   G    +
Sbjct: 6   LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLP--GMNGFQ 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R++    P+I ++   + +  +     G DD + KP    E+LARV+A+ RR+  
Sbjct: 64  ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 123

Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       N    G + ++ +  +  + G+   L  +E  +L YL    G  + + 
Sbjct: 124 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + + ++G FD    +  V+ H+S LRKKL        +DS R +GY +  N
Sbjct: 184 DLMNVVWG-FDYIGGQRTVDVHVSSLRKKLELDPESVHIDSIRGVGYKLVVN 234


>gi|170680782|ref|YP_001743277.1| transcriptional regulatory protein YedW [Escherichia coli SMS-3-5]
 gi|194433665|ref|ZP_03065941.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|293405449|ref|ZP_06649441.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|301018162|ref|ZP_07182681.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|331673476|ref|ZP_08374244.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332278865|ref|ZP_08391278.1| transcriptional regulatory protein YedW [Shigella sp. D9]
 gi|170518500|gb|ACB16678.1| heavy metal response regulator [Escherichia coli SMS-3-5]
 gi|194418094|gb|EDX34187.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|291427657|gb|EFF00684.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|300399854|gb|EFJ83392.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|320180635|gb|EFW55563.1| Putative two-component system response regulator YedW [Shigella
           boydii ATCC 9905]
 gi|324119015|gb|EGC12904.1| heavy metal response regulator [Escherichia coli E1167]
 gi|331069674|gb|EGI41061.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332101217|gb|EGJ04563.1| transcriptional regulatory protein YedW [Shigella sp. D9]
          Length = 260

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|62181691|ref|YP_218108.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62129324|gb|AAX67027.1| putative transcriptional regulator (OmpR family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322716176|gb|EFZ07747.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 270

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L   G    
Sbjct: 54  ILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLP--GMDGR 111

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R  R    Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 172 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 232 -WDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 267


>gi|163761277|ref|ZP_02168352.1| phosphate regulon, two-component response regulator protein
           [Hoeflea phototrophica DFL-43]
 gi|162281434|gb|EDQ31730.1| phosphate regulon, two-component response regulator protein
           [Hoeflea phototrophica DFL-43]
          Length = 229

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +          +G  ++     +  E        D+  ++  L   G   +
Sbjct: 7   ITVVEDEEALSVLLQYNLEAEGYEVDAVLRGDEAEIHLQERVPDLLILDWMLP--GISGI 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +RA  +    P+I ++        +    +G DD V KP    E+LARV A+ RR
Sbjct: 65  ELCRRLRARPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELLARVRAMLRR 124

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ++  + G I +  +      +     L   E R+LE+LM++ G+  ++ Q+   
Sbjct: 125 ASPEVISSLLKVGDIELDRETHRVRRRARDIKLGPTEFRLLEFLMSSPGRVYSRAQLLDG 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V+E  V+ H+ +LRK +      D + + R  GYSI+
Sbjct: 185 VWG-HDVYVDERTVDVHVGRLRKAVNLSGMRDIIRTVRGAGYSIE 228


>gi|56962949|ref|YP_174676.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909188|dbj|BAD63715.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 233

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G S+    + + +E +     + +  +   ++       
Sbjct: 6   ILIADDEEEIADLLAIHLEKEGYSV--AKAADGQEAIHIVETQPIDLLILDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRRIRETHNMPIIFLSAKTSDFDKVHGLVIGADDYITKPFTPIELVARVNAQLRRFMK 123

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N          R +   + +  + R   + GE   L  +E  IL  L ++  K  +   
Sbjct: 124 LNQPRTAVDPKTRLDYRGLVISLEQRTVTLYGENIELTPKEFDILYLLASHPKKVFSVEN 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           IF  ++G        N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 IFKQVWGEAYFEG-ANTVMVHIRTLRKKLEEDKRKDKWIKTVWGVGYAFN 232


>gi|228901707|ref|ZP_04065880.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228857936|gb|EEN02423.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 226

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|225569868|ref|ZP_03778893.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
           15053]
 gi|225161338|gb|EEG73957.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  + E  L+ +  ED       L+  G    
Sbjct: 4   ILIVEDEEAIADLEKDYLELSGFHVEVAN--DGELGLKKALEEDYDLFILDLMLPGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  DICRQVRNVKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   NN  E   +++ +  R   V GE      +E  +L +L ++      K ++F
Sbjct: 122 LTGSAAEVNNIIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 REIWDM-ESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRF 227


>gi|39934984|ref|NP_947260.1| two-component transcriptional regulator FeuP [Rhodopseudomonas
           palustris CGA009]
 gi|192290518|ref|YP_001991123.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39648835|emb|CAE27356.1| two-component transcriptional regulator FeuP, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192284267|gb|ACF00648.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 224

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLP--KMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +    R +S+ +P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELTCGPVVLDTRTGRVSVSGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL    G D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKL----GVDIIQTVRGLGYLL 216


>gi|116512403|ref|YP_809619.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108057|gb|ABJ73197.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 230

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E  ++        +S   D+  ++  L        
Sbjct: 6   ILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPE--LDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   D G DD + KP    E+LARV A +RR + 
Sbjct: 64  EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            + +    R      +V  L RRE  +L  LM N G  V +  + S 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++E  E NVV+ +I  LR K+  +     + + R LGY +
Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVM 226


>gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20]
          Length = 248

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D   +    +G  +    +             DV  ++  L       LE
Sbjct: 20  LVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDF--DGLE 77

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R H   VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 78  VMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  +     E G +R+  D  +     +   L   E  +L YLM N  + ++K QI   +
Sbjct: 138 SEEKQASLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE +IS LR+K+ +K     + + R +GY +
Sbjct: 198 WN-YDFGGQANIVELYISYLRRKI-DKGREPMIHTMRGVGYVL 238


>gi|291518264|emb|CBK73485.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 229

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +            ++     E       +   D+  ++  L   G    
Sbjct: 4   ILIIEDEEAIAELEKDYLELSNFEVDIEADGEKGLQKALAGNYDMYILDLMLP--GIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL + IR    VP++ ++        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  ELCKRIREVKNVPILMVTAKKEEIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +  +      +R+    R   + GE      +E  +L +L  N     +K Q+F
Sbjct: 122 LVQSPNIQKDEISIRGLRIDKASRRVWINGEEKTFTAKEFDLLTFLAENPNVIYSKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G  +   + + V  H++K+R+K+  N      +++   +GY  
Sbjct: 182 ETLWGE-ESIGDISTVTVHVNKIREKIELNTSKPQYIETIWGVGYRF 227


>gi|291445133|ref|ZP_06584523.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348080|gb|EFE74984.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 228

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 9   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLP--GRDGIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 67  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 127 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 224


>gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8]
 gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8]
 gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
          Length = 229

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++G  + + ++  E    L ++   D+  ++  +       
Sbjct: 3   ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPI--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV +I RR +
Sbjct: 61  MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSR 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       +  E GP+ +  D  +   ++G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
          Length = 237

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +         +   D++ ++  L        
Sbjct: 10  LLVVDDEPNILELLATSLRFAGFEVVTAANGRDALLKAEAEDPDLAVLDVMLPD--IDGF 67

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++        +     G DD V KP    E++AR+ A+ RR +
Sbjct: 68  SVTRKLRAAGRHFPILFLTAKDDTDDKVAGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 127

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++R +   + +  D  +    G    L   E ++L YLM N  + ++K QI   +
Sbjct: 128 PLEEEDSRLKVDGLVLDDDAHEVFRGGREIDLSPTEFKLLRYLMLNPNRVLSKAQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +D   + ++VES+IS LR+K+ N       + +KR +GY +
Sbjct: 188 W-EYDFNGDASIVESYISYLRRKIDNDPEQPSLIHTKRGVGYLL 230


>gi|238797369|ref|ZP_04640869.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC
           43969]
 gi|238718800|gb|EEQ10616.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC
           43969]
          Length = 220

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G S++ F   +      +SA  D   ++  L   G   L
Sbjct: 3   ILLIEDDKLIGDGIKAGLIKMGFSVDWFTDGQQGLSALASAPYDAVVLDLSLP--GMDGL 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           ++ R   R     P++ ++   +LQ  +     G DD + KP    E++AR+ A+  RR 
Sbjct: 61  DILRTWRRNGHDEPVLILTARDALQERVAGLQQGADDYLCKPFALIEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G I +         QGE   L  +E  +LE L+ N G+ + ++ I   IY 
Sbjct: 121 GQAQTVLTHGSISLDPINLSVTHQGEPLYLKPKEFALLELLLRNEGRVLPRSLIEEKIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N +E HI  LRKK     G   + +   +GY++
Sbjct: 181 -WDDEVSSNAIEVHIHHLRKK----FGSHFIRTVHGIGYTL 216


>gi|323968255|gb|EGB63663.1| heavy metal response regulator [Escherichia coli M863]
 gi|323977850|gb|EGB72936.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 260

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|225574441|ref|ZP_03783051.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038326|gb|EEG48572.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
           10507]
          Length = 232

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  +      E L+   RE++      ++  G    
Sbjct: 5   ILVVDDEHDIADLLEVYLKNENYTV--YKYYSAMEALECIEREELDLAILDIMLPGVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 63  SICQKIRERYTYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQLRRYKK 122

Query: 122 SN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +           R     + +     +  + GE+  L   E  IL+ L+   G  V+  
Sbjct: 123 YSPVSEVETQKTTRLSYKKLELDMKTYECLLDGELVALTPTEFSILQLLLKQAGNVVSLE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           ++F +++         + +  HI  LR+KLR+       + +   +GY I
Sbjct: 183 ELFRSVWKDEYYNKNSSTITVHIRHLREKLRDTGANPTYIKTIWGVGYKI 232


>gi|150007699|ref|YP_001302442.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256839960|ref|ZP_05545469.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|149936123|gb|ABR42820.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256738890|gb|EEU52215.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
          Length = 225

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  +  + + +     + + + D   +   +I      L
Sbjct: 4   ILLVEDEVNIASFIERGLREFGHEV--YVAYDGAAGWELTQKNDFQLLILDIIMPKMNGL 61

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L +  R       P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 62  QLCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRS 121

Query: 120 KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +       G + +          G+V  L  +E R+LEY + N+G  +++  +   +
Sbjct: 122 GNESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   D     NVV+ +++ LR K+        + +   +GY ++
Sbjct: 182 WDK-DFDTNTNVVDVYVNYLRTKIDKDFEPKLIHTVVGVGYMME 224


>gi|315657068|ref|ZP_07909953.1| phosphate regulon response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492460|gb|EFU82066.1| phosphate regulon response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 227

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G +  GF   +           ++  ++  L   G   
Sbjct: 1   MIYFVEDDLNIRDLVVYTLGSTGFTARGFADYQEFREAMMELLPEMILLDIMLP--GVDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R IRA+ +   +P+I ++   +    +   D G DD + KP    E+++R+ A+ R
Sbjct: 59  IQILRRIRANPETKAIPVIMVTAKGAEFDKVKSLDLGADDYITKPFGMMELVSRIRAVLR 118

Query: 118 R-------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R                 G I +        V+G    L  +E ++LE LM+  G   ++
Sbjct: 119 RVPRLTDPTAEDEEILTIGTIDLNLPRHTVAVEGREVKLTLKEYQLLEELMSQPGILFSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +I+G +        V+ HI  LRKKL        +++ R +GY I
Sbjct: 179 DKLLDSIWG-YSFHGGTRTVDVHIRTLRKKLGPA--AKHIETVRGVGYKI 225


>gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
 gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
          Length = 223

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G  +   N       L +  R D+  ++  L        
Sbjct: 4   ILVVEDDFDIQELLQNFLQEAGYEVAVANDGVEALSLFAGERYDLIVLDIMLP--KIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +  +IR  S VP+I ++     +  +   D  VDD + KP     +L ++AA+ RR   
Sbjct: 62  GVCELIRKQSDVPIIMLTALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKIAAVLRRSNR 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +        G + +  D     V G  F L ++E  IL  L+ ++G+ + +  +   +
Sbjct: 122 ETDEKYQIITYGNLLLNCDSYTATVDGANFELTQKEFEILRELLTHQGRILTRQNLLDKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +D   +E VV++HI  LRKKL    G D + + R +GY +D
Sbjct: 182 W-RYDFYGDERVVDTHIKNLRKKL----GIDFIQTIRGVGYKVD 220


>gi|297191203|ref|ZP_06908601.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718520|gb|EDY62428.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 244

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +         G +++          L +  R D+  ++  L   G   L
Sbjct: 15  ILVVDDDPTVAEVVTGYLERAGFAVDRAADGPQALRLAAGRRPDLVVLDLMLP--GMDGL 72

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--- 116
           E+ R +RA   ++VP+I ++        +   + G DD V KP   RE++ RV ++    
Sbjct: 73  EVCRRLRAGEQARVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRG 132

Query: 117 ---RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +        I +    R     G    L  RE  +L +LM + G+ + + ++
Sbjct: 133 GGGAGERRAGPELAAAGIVLDPGARRATKDGHELALTLREFDLLAHLMRHPGEAIGRERL 192

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
              ++G   E  + + V  H+ +LR K+ +       + +   +GY  D
Sbjct: 193 MQDVWGW--EFGDLSTVTVHVRRLRGKIEDDPARPRLIQTVWGVGYRFD 239


>gi|154482551|ref|ZP_02024999.1| hypothetical protein EUBVEN_00218 [Eubacterium ventriosum ATCC
           27560]
 gi|149736576|gb|EDM52462.1| hypothetical protein EUBVEN_00218 [Eubacterium ventriosum ATCC
           27560]
          Length = 228

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   + +       + G  +  F +    E   +    D+  ++  L  +    L
Sbjct: 4   IYILEDDKNISEIEQFALKNAGYEVSAFATASDFENALTKEHPDLIIMDIMLPDR--DGL 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +RA       P+I ++   S    +   D G DD + KP    E+++RV A+ RR
Sbjct: 62  SVLKDVRAEQSTAKLPVIMVTAKTSEMDKVKGLDQGADDYMTKPFGIMELISRVKALLRR 121

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             VS  ++      I +        V G+   L  +E ++L+ L+ N G  + ++QI   
Sbjct: 122 ANVSGGSHIYSFDGITMDDAKHQVLVDGQETELTYKEYQLLKMLIQNSGIVLQRSQILDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G+ D   E   ++ HI  LR+K+  K     + + R +GY++++
Sbjct: 182 VWGI-DYEGESRTLDMHIKTLRRKIGEKGS--LIQTVRNVGYTMNY 224


>gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 232

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|330875500|gb|EGH09649.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 226

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +           G S     N L+    +++SA   +  ++  L   G   
Sbjct: 9   ILIVEDEPKLATLMRDYLIAAGYSTHCLANGLDVVPAVRASA-PQLILLDIMLP--GRDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R+ S VP+I I+        L   D G DD + KP   RE++ARV AI RR  
Sbjct: 66  MDICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTS 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++       ++V  +       G V  L   E R+L     + G+  ++ Q+   +Y  
Sbjct: 126 ATDP-LAAKGLQVDEEHYQASFNGVVLDLTPVELRLLATFARSPGRVFSRDQLLDRLYSD 184

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
               V +  V+SHI  LR+KL     G D + S   +GY ++
Sbjct: 185 H-RVVTDRTVDSHIRNLRRKLEQACPGQDQIQSLYGVGYKLE 225


>gi|328885015|emb|CCA58254.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 245

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDATIVEAISARLRAEGFLVQTATDGPAAVDAAEAWQPDLMVLDVMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|302870597|ref|YP_003839234.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506834|ref|YP_004085721.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302573456|gb|ADL49658.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315413453|gb|ADU11570.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 227

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 9/221 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        DG  +      E         R     ++  L   G   
Sbjct: 9   LVLVVEDEPAIADLVRLYLTRDGFGVHLERDGEAGLAAARRLRPVACVLDIALP--GLAG 66

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ R +RA     P+I ++        +   + G DD V KP   RE+LAR+ A+ RR 
Sbjct: 67  TEICRRLRAAGDWTPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELLARLRAVLRRT 126

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      G + +    R     G    L   E  +L +LMA  G+   + ++ + +
Sbjct: 127 AGVPAEQPRTLGAVTLDPARRTVTAGGTPVQLTSTEFDLLAHLMARPGRVFTREELLAGV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G    A     V+ H++++R KL        + + R +GY
Sbjct: 187 WGYAAHAG-TRTVDVHVAQVRAKL---GPDSVIRTHRGVGY 223


>gi|229101700|ref|ZP_04232417.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681648|gb|EEL35808.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 224

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  +        S A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIP--GIDGLQ 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +         V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDRVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|90961187|ref|YP_535103.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820381|gb|ABD99020.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 229

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G  +E  +N  E    L  +    +  ++  +       
Sbjct: 3   ILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQ--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  SQ+P++ +S        +     G DD V KP +  E++ARV ++ RR +
Sbjct: 61  MEVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAE 120

Query: 121 VSN-----NRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +      ++ E GP+ +  D  +   ++G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 HNVKNNELDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+ +   G   + +   +GY I+
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227


>gi|194440153|ref|ZP_03072201.1| heavy metal response regulator [Escherichia coli 101-1]
 gi|256022375|ref|ZP_05436240.1| transcriptional regulatory protein YedW [Escherichia sp. 4_1_40B]
 gi|293415278|ref|ZP_06657921.1| two-component system [Escherichia coli B185]
 gi|194420916|gb|EDX36955.1| heavy metal response regulator [Escherichia coli 101-1]
 gi|291432926|gb|EFF05905.1| two-component system [Escherichia coli B185]
 gi|324018823|gb|EGB88042.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3]
          Length = 260

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 232

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  + +  + G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSVLQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|117624105|ref|YP_853018.1| transcriptional regulatory protein YedW [Escherichia coli APEC O1]
 gi|301029610|ref|ZP_07192682.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|91072760|gb|ABE07641.1| putative 2-component transcriptional regulator yedW [Escherichia
           coli UTI89]
 gi|115513229|gb|ABJ01304.1| putative 2-component transcriptional regulator [Escherichia coli
           APEC O1]
 gi|294492861|gb|ADE91617.1| heavy metal response regulator [Escherichia coli IHE3034]
 gi|299877512|gb|EFI85723.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|307626558|gb|ADN70862.1| transcriptional regulatory protein YedW [Escherichia coli UM146]
 gi|323952458|gb|EGB48331.1| heavy metal response regulator [Escherichia coli H252]
          Length = 260

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYSF 255


>gi|16125542|ref|NP_420106.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221234288|ref|YP_002516724.1| two-component response regulator protein [Caulobacter crescentus
           NA1000]
 gi|13422630|gb|AAK23274.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220963460|gb|ACL94816.1| two-component response regulator protein [Caulobacter crescentus
           NA1000]
          Length = 242

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 107/233 (45%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSARE----DVSAIEAFL 53
            ++++D   V D        +G  +    +G + LE    L +  RE     V  ++  L
Sbjct: 3   ILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDLML 62

Query: 54  IGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
                  +E+ + +RA     P++ ++   ++   +    +G DD + KP    E+LAR+
Sbjct: 63  P--KMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120

Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            A+ RR +     +N   + G + +          GE   L  RE  +LE  +++ G+ +
Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ +I S ++G+ DE    NVV+ ++ +LR K+   L    + + R LGY ++
Sbjct: 181 SRERILSNVWGV-DEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLE 232


>gi|297565507|ref|YP_003684479.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849956|gb|ADH62971.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 222

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   + +        DG   E     +    L  +A+ D+  ++  L       
Sbjct: 1   MVLVVEDEPEIAEILEGYLRRDGYRTERAADGKAALGLYRAAKPDLVLLDIQLPE--LDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ R IRA    P+I ++        L   + G DD V KP   RE++ARV A+ RR  
Sbjct: 59  LEVLRRIRADGNTPVILVTARSEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRAN 118

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L+ +      GP+ + ++     V      L   E R+LE L    G+   + ++  A 
Sbjct: 119 PLESAATVLRAGPLEIDTEWVMARVGASRLELTPTEFRLLETLARTPGRAFTRQELLEAA 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             L D    E V++ H+  LRKKL        +++ R +GY +
Sbjct: 179 --LPDSDALERVIDVHLKNLRKKLEAAGATGLLETVRGVGYRL 219


>gi|207856439|ref|YP_002243090.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584398|ref|YP_002638196.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|206708242|emb|CAR32542.1| response regulator [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224468925|gb|ACN46755.1| copper resistance protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 248

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 83  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 255

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R DV  ++  L       L 
Sbjct: 30  LVVDDEASLSELLSMALRYEGCEVRSAGDGAGAVRAARGFRPDVVVLDIMLPD--MDGLA 87

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  ++ R   QVP++ ++   S++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 88  VLGQLRREIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGA 147

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +      +    G +R+  D  +    G+   L   E  +L YLM N  + ++K QI   
Sbjct: 148 AQAARGGSVLAVGDLRLDEDSHEVTRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDR 207

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           ++  +D   + NVVE +IS LR+KL    G  P + ++R  GY I
Sbjct: 208 VW-SYDFGGQANVVELYISYLRRKLEAGTGLPPMIHTRRGAGYLI 251


>gi|4530445|gb|AAD22036.1| response regulator PnpR [Streptococcus pneumoniae]
          Length = 250

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 15/222 (6%)

Query: 11  VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70
           + +        +G S +   +      L  +   D   ++  L       +E+ + +RA 
Sbjct: 29  ILNLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQ--LDGMEVCKRLRAK 86

Query: 71  S-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127
             + P++ +S        +   + G DD + KP   RE+LARV A+ RR K      +  
Sbjct: 87  GVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSD 146

Query: 128 --------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G ++V+ +  +     ++  L  +E  +L YLM +    + + ++   I+G
Sbjct: 147 NIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG 206

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 207 -YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 247


>gi|237798950|ref|ZP_04587411.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021804|gb|EGI01861.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 225

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 108/222 (48%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL   + F P+++ R +GY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDGSVAFKPIETVRGMGYLFN 221


>gi|228966132|ref|ZP_04127195.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793617|gb|EEM41157.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 236

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLQ 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 74  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|47564778|ref|ZP_00235822.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558151|gb|EAL16475.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 233

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + + E+ ++    + +  +   ++       
Sbjct: 6   ILIADDDLEIAELIEIHLKKEGYQV--VKATDGEDAIEIIQSQAIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKQNMPIIFLSAKTSDFDKVKGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++   +  E G + +  + R   V GE   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKVEEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  I+         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTFN 232


>gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN]
 gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
 gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae]
 gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
          Length = 228

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   V++        +G S+E  N  +  E L+  AR+   A+   ++      L
Sbjct: 3   ILAVDDDRAVRESLRRSLSFNGYSVELAN--DGVEALEMVARDRPDALVLDVMMPRLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+    +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 121 PDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGESRLIHTVRGVGYVL 223


>gi|260889876|ref|ZP_05901139.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254]
 gi|260860482|gb|EEX74982.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254]
          Length = 227

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D  +     +   ++  + L  ++ L      +  AI + ++  G    
Sbjct: 3   ILVIEDEKNLNDIIVKKLVLEKYCVD--SCLNGKDALDYIFSVEYDAIVSDIMLPGIDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR    + P++ ++    ++  +   D G DD + KP    E++ARV  + RR  
Sbjct: 61  EILRRIREKGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARVRVLLRRNP 120

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +N     N      + V  +  D         L  RE  ILEY++ N+ + +++ QI  
Sbjct: 121 STNNSNASNIFSIANLTVNCNSHDVFRDKTPIKLSTREFTILEYMIRNKERVLSREQIEQ 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+  +D     NV++ +I  LR+K+        + + R +GY +
Sbjct: 181 HIWN-YDYEGGTNVIDVYIRYLRRKIDKDFEPKLIHTIRGVGYVL 224


>gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 222

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G ++   N           ++ D+  ++  L  +     
Sbjct: 4   ILIAEDEPRIAAFLEKGLKANGFTITVANDGLDALQKALGSQFDLLILDLNLPHQ--DGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R   + VP+I ++    ++  +   + G DD V KP    E+LARV A  R   
Sbjct: 62  QILKQLRGQGEKVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLRHQT 121

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +S          G I +    R  +V      L  +E ++LE LM +  + +++ Q+   
Sbjct: 122 LSPVKEERVLTAGDILLDLYTRQAQVADCPIKLSAKEFQLLETLMRHPEQVMSREQLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ ++  LRKKL    G + +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKL----GGNRIETVRGMGYRL 220


>gi|78059924|ref|YP_366499.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77964474|gb|ABB05855.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 277

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   +S +  E L+   +    A+   L+  G   L
Sbjct: 45  ILIVEDDADIADVLSLHLRDERYEV--VHSADGAEGLRLLEQGGWDALILDLMLPGVDGL 102

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 103 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 162

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 163 ALARDSRIDAGTLDVAGLAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 222

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 223 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 269


>gi|239941691|ref|ZP_04693628.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988150|ref|ZP_04708814.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|326778967|ref|ZP_08238232.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|320010461|gb|ADW05311.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
 gi|326659300|gb|EGE44146.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 225

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLP--GRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|149279033|ref|ZP_01885167.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149230312|gb|EDM35697.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 232

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 103/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +    I    + G+ +    + +    L+ + + D   I   ++  G   +
Sbjct: 3   ILLIEDEPGLVSVIIRGLTEVGMQISV--AGDGLVGLEMAMKHDFDLIILDIMLSGMNGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR  ++ VP++ ++   S +  +   DSG DD + KP    E+ AR+ ++ RR K
Sbjct: 61  QVCREIRKGNNNVPVLMLTALSSTENIITGLDSGADDYLVKPFKFAELEARIRSLVRRSK 120

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     +      + V +  +     G+   L   E R+LEY + N+   +++ QI   +
Sbjct: 121 VVSSPRSTQSISGLEVDTLAKTVSRDGKTINLTATEYRLLEYFIQNQNVVLSRIQILENV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + D  +  NVV+ +I+ LRKK+ N      + +   +GY  
Sbjct: 181 WDI-DFNMGTNVVDVYINYLRKKIDNGYQTKLIHTVFGMGYIF 222


>gi|17232680|ref|NP_489228.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134327|dbj|BAB76887.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 222

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G +            +  S+  D+  ++  L   G+  L
Sbjct: 4   ILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLP--GKDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R     +P+I ++    +Q  +  F++G DD + KP    E+L RV A  R+  
Sbjct: 62  DVLEELRGQGENIPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSG 121

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        ++G I +    R  ++  +   LP RE  + E    + G+ +++ Q+   
Sbjct: 122 GSQAMEETVIKSGNIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ ++  LRKKL    G D +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKL----GNDLIETVRGMGYRL 220


>gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 232

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   + G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|15836991|ref|NP_297679.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|28199554|ref|NP_779868.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71274658|ref|ZP_00650946.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71899630|ref|ZP_00681784.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71901814|ref|ZP_00683880.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|170730925|ref|YP_001776358.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182682290|ref|YP_001830450.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|9105223|gb|AAF83199.1|AE003890_8 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|28057669|gb|AAO29517.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71164390|gb|EAO14104.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71728413|gb|EAO30578.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71730582|gb|EAO32659.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|167965718|gb|ACA12728.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182632400|gb|ACB93176.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307578567|gb|ADN62536.1| two component transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 227

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +++   A    +G +++     E   ++      DV  I+  L       +
Sbjct: 3   ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGIYMGREVPFDVGIIDLGLP--KMSGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +R    + P++ ++   S Q+ ++    G DD + KP H  E+LARV A+ RR  
Sbjct: 61  DLVKALRDEGKKFPVLILTARSSWQSKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E G + +    +   V G    L   E ++LEYLM + G+ V+K  +   IY 
Sbjct: 121 GWSKPTLECGSVALDLAAQTVSVNGTNVDLTSYEYKVLEYLMVHAGELVSKADLTEHIYQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL       P+++ R  GY  
Sbjct: 181 Q-DFDRDSNVLEVFIGRLRKKLDADGDLKPIETVRGRGYRF 220


>gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
 gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
          Length = 228

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G S+E  +       + +S R D   ++  +       L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPR--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R     +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR K
Sbjct: 61  EVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + +    R+         L R E  +LE L+AN  + + +++I   
Sbjct: 121 PEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD     N +E ++  LR+K         + + R +GY +
Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223


>gi|307138638|ref|ZP_07497994.1| transcriptional regulatory protein YedW [Escherichia coli H736]
 gi|331642590|ref|ZP_08343725.1| transcriptional activator protein CopR [Escherichia coli H736]
 gi|331039388|gb|EGI11608.1| transcriptional activator protein CopR [Escherichia coli H736]
          Length = 260

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++     +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVT--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|1903396|gb|AAC45062.1| response regulator protein [Aeromonas jandaei]
          Length = 223

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D A + D  I     DG  +E F   +      + +R D   ++  L       
Sbjct: 5   VIWLVEDEASIADTLIYALQTDGFEVEWFTLGQQLLSRLAQSRPDFLILDVGLPD--ISG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + +R  +  PL+ ++        L   + G DD V KP   RE+ ARV  I RR +
Sbjct: 63  FELCKQVRTLTDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRRSQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S   A    + +  +      +G+   L R E  +L+ LM   G+  ++ Q+   ++  
Sbjct: 123 PSAQPAPL--LALDEERARIHFRGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWQD 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +E+++   V++HI  +R KLR      + + + R LGYS++
Sbjct: 181 AEESLD-RTVDTHIKTIRAKLREHDPEANLILTHRGLGYSLE 221


>gi|118581362|ref|YP_902612.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504072|gb|ABL00555.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 223

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         +D  S+   +          S    ++ ++  +  K    L
Sbjct: 3   ILVVEDEKKVAGFIKRGLEEDDYSVTIVHDGAEGLKQAQSGEYSLAILDVMVPKK--DGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   SQ+P++ ++   +    +   ++G DD + KP    E+LARV A+ RR +
Sbjct: 61  TVIRELREGGSQMPVLMLTARGTTDDIVSGLEAGADDYLTKPFAFAELLARVRALLRRSE 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      +R+          G    L  +E  +LEYL+ N  K +++  I   ++ 
Sbjct: 121 HDRGAEIFFADLRLDPVSHKVWRSGNEIDLTAKEYGLLEYLVRNPNKVLSRAMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+  +     + + R  GY +
Sbjct: 181 -YAFDSFTNIIDVYVNYLRKKVDKEYSTKLIHTVRGQGYIL 220


>gi|307291241|ref|ZP_07571125.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306497472|gb|EFM67005.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|315030917|gb|EFT42849.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
          Length = 235

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 102/238 (42%), Gaps = 30/238 (12%)

Query: 5   IDDRALVKDGYIALFGDDGVSL-------EGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
           I+D   V +     F ++G          EG  +     +L SS + D+  ++  L    
Sbjct: 2   IEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTT-----FLASSEKWDMITLDLNLPS-- 54

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              + + R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++
Sbjct: 55  MDGMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALH 114

Query: 117 RRLKVSNNRAE------------TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMAN 163
           RR +V+    +            T   ++ +  R+  +  ++   L  +E  +L  L   
Sbjct: 115 RRAEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKK 174

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 175 PRQVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 230


>gi|303240383|ref|ZP_07326901.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592110|gb|EFL61840.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 239

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 95/236 (40%), Gaps = 22/236 (9%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   + D        +G +       E    + +     +  ++  +  K     E+ +
Sbjct: 4   DDNDGIVDILKTYVSKEGFTPIIAYDGESAVNMFNEYSPLLILLDVMMPKK--DGFEVCQ 61

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN- 124
            IR  S VP+I ++        +   D G DD + KP    E++AR+ A+ RR+ +S   
Sbjct: 62  EIRKTSNVPIIMVTAKGEDADRIMGLDIGADDYIVKPFSPGEVMARIRAVLRRIDISEED 121

Query: 125 ---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + +     + ++ G+   L ++E  I   L +N GK  ++  + ++++G +
Sbjct: 122 KKDIIRFPGLEINISDYEVKINGQEVNLTKKEIEIFWLLASNPGKVFSRDNLLNSVWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKL---------RNKLGFDP------VDSKRFLGYSIDW 222
           +   +   V++HI +LR K+          +K    P      + +   +GY  + 
Sbjct: 181 EYFGDARTVDTHIKRLRAKVDIPGSMASSESKSTNQPESFIWDIKTIWGVGYKFEV 236


>gi|239930897|ref|ZP_04687850.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 225

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 6   LVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLP--GRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221


>gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L    R D+  ++  +       +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   ++G    L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVW-KDAFYKSDNTVMVHITKIRDKIEADSKHPIYIKTVWGIGYKI 228


>gi|253698881|ref|YP_003020070.1| transcriptional regulator [Geobacter sp. M21]
 gi|251773731|gb|ACT16312.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 224

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++   +      E    L      D+  ++  L  K    L
Sbjct: 3   ILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKK--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR +
Sbjct: 61  SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          +R+         + +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+  +     + + R +GY +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDREADKKLIHTVRGVGYIL 220


>gi|187732444|ref|YP_001879602.1| transcriptional regulator YedW [Shigella boydii CDC 3083-94]
 gi|187429436|gb|ACD08710.1| heavy metal response regulator [Shigella boydii CDC 3083-94]
          Length = 260

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|84498188|ref|ZP_00996985.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84381688|gb|EAP97571.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 227

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +  ++G+ ++               R DV  ++  L   G   LE
Sbjct: 8   LVVDDDLALAEMLGIVLRNEGLEVDHVADGSGALAAFRETRPDVVLLDVMLP--GIDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IRA S VP++ ++        +   +SG DD V KP   +E++ARV A  RR   V
Sbjct: 66  VCRRIRAESGVPIVMLTARTDTIDVVVGLESGADDYVVKPFKPQELIARVRARLRRGDDV 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R   G + +   G   + +GE   L   E  +L  L     +   +  +   ++G +
Sbjct: 126 EPERLTIGDLVIDVAGHSVKREGESLSLTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 185 RHAGDTRLVNVHVQRLRSKIEKDPERPEIVVTVRGVGYR 223


>gi|260914398|ref|ZP_05920867.1| two component response regulator [Pasteurella dagmatis ATCC 43325]
 gi|260631499|gb|EEX49681.1| two component response regulator [Pasteurella dagmatis ATCC 43325]
          Length = 223

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D +L+ +G        G +++ F          +SA  D   ++  L       L
Sbjct: 3   ILLIEDDSLIGNGLQIGLTKSGFTVDWFQDGRTGLEAVNSAPYDAVVLDLTLP--KMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           E+ +  R     VP++ ++   +L   +     G DD + KP    E++AR+ A+  RR 
Sbjct: 61  EILQTWRKEKCDVPVLILTARDTLDERVTGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             SN   E   IR   + R   +Q +   L  RE ++LE  M N+ + + +  I   +Y 
Sbjct: 121 GQSNPIIEHSQIRFDPNQRKVFLQNQEVALTTREYKLLELFMLNKDRVLPRAVIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 180 TWDDEVSSNALEVHIYNLRQKL----GKHFIRTVHGVGYTLGKN 219


>gi|167761616|ref|ZP_02433743.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
 gi|167660759|gb|EDS04889.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
          Length = 226

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 105/224 (46%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD + ++       G +G  +    + +  E L+    E D++ I   ++      
Sbjct: 6   ILIVDDESRMRKLVKDFLGREGYLVR--EAGDGMEALEIFYEEKDIALIILDVMMPRMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R IR  SQVP+I ++        L  F+ GVD+ ++KP   + ++ARV AI RR  
Sbjct: 64  WQTCREIRQSSQVPIIMLTARSEEHDELQGFELGVDEYISKPFSPKILVARVEAILRRSH 123

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +  + G I +       ++      L  +E  +L Y + N+G  +++ +I + ++
Sbjct: 124 AIGTGDVIDAGGIIIDKAAHQVKIDDTEIDLSFKEFELLAYFVENQGIALSREKILNNVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +D   +   +++H+ KLR KL +K   + + +   +GY  + 
Sbjct: 184 N-YDYFGDARTIDTHVKKLRSKLGDKG--NYIKTIWGMGYKFEV 224


>gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 230

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G S       +           D+  ++  +   GE   
Sbjct: 9   ILIVDDEEDMRHLIGMYLENAGFSCRYAAGGKETLEEIQKNLPDLILLDIMMP--GEDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +   +RA  +VP+I +S        +     G DD + KP    E+ AR+ A+ RR   
Sbjct: 67  SVCERVRAQYEVPVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVLRRSGS 126

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +N    G I +    R  +V+G    L  +E  +L + + ++   +++ Q+   I
Sbjct: 127 ISGADSNITSAGKITIDKKARSVKVEGSYIMLTLKEYELLMFFIGHQSHALSREQLLEQI 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G+ D       V++HI  LR KL      D + +   +GY  + 
Sbjct: 187 WGM-DYLGSLRTVDTHIKTLRMKL---GAGDYIKTVWGIGYKFEV 227


>gi|87310230|ref|ZP_01092361.1| DNA-binding response regulator [Blastopirellula marina DSM 3645]
 gi|87286979|gb|EAQ78882.1| DNA-binding response regulator [Blastopirellula marina DSM 3645]
          Length = 234

 Score =  232 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+         + G       S E       + + D   ++  L G G   L
Sbjct: 14  ILVVEDEQLLGKSLSRGLTEAGHECTWTRSGEKGLEYARTQQFDAILLDLMLPGIG--GL 71

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      PL+ ++   S+   +   D G DD + KP    E+LAR+ A++RR  
Sbjct: 72  EVVRTLRDEGIGTPLLILTALGSVDDRVQGLDHGADDYMVKPFAFPELLARLNAMWRRAS 131

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E GP+ +    R      +   L   E  ILE LM + G+ V++  +   ++G
Sbjct: 132 PRPALNYEAGPLALDLGSRKVTRSSKEIDLSPSEFSILELLMRHAGQIVSRKMLNEHLWG 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D     NV++ HI+ LR+K+        + + R  GY +
Sbjct: 192 Q-DWNGMTNVIDVHINHLRQKVDRGFDEPLIHTVRGRGYVL 231


>gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 234

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++      E    L +  R D++ ++  +  K    L
Sbjct: 6   ILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKK--DGL 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R +R+H   +P++ ++   S++  +   D+G DD + KP    E+LAR  +++RR  
Sbjct: 64  DVCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAA 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +        + +  + RD         L R E  +LE LM N  K +++  I
Sbjct: 124 RPAIQEGETREPLRFEDLTLNPETRDVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D     N +E +I  LR+K         + + R +GY++
Sbjct: 184 LEEVWG-YDFPTSGNALEVYIGYLRRKTEANNETRLIHTVRGVGYAL 229


>gi|229105491|ref|ZP_04236132.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228677916|gb|EEL32152.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 232

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLKKEGYHV--VKAADGEEAVHIIKTQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKYHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  S +  E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L    R D+  ++  +       +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   ++G    L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVW-KDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|157148587|ref|YP_001455906.1| DNA-binding transcriptional regulator QseB [Citrobacter koseri ATCC
           BAA-895]
 gi|157085792|gb|ABV15470.1| hypothetical protein CKO_04414 [Citrobacter koseri ATCC BAA-895]
          Length = 219

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D AL+ DG  A     G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLVEDDALIGDGIKAGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R    + P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREQGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALLRRAN 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N    G + +        + G+  PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQVSNELRHGQVTLNPGNLVATLAGDPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N +E H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEDVSSNTIEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|134102532|ref|YP_001108193.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915155|emb|CAM05268.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 247

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 101/224 (45%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A     G  + G  +        S    D+  ++  L  +      
Sbjct: 18  LVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQ--DGFS 75

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     VP++ ++   +++  +    +G DD V KP    E++ R+ AI RR++ 
Sbjct: 76  VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVRP 135

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     ++R     + +  +  +    G    L   E ++L YLM N  K V+++QI   
Sbjct: 136 AHLDEPDSRLRYHDLELDEEAYEVRRGGRPVALSPTEFKLLRYLMVNAEKVVSRSQILDR 195

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  ++   +  VVES+IS LR+K+ +      + + R +GY +
Sbjct: 196 VWN-YEFGGDSRVVESYISYLRRKI-DSTAPPLIHTIRGVGYVL 237


>gi|290959917|ref|YP_003491099.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260649443|emb|CBG72558.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 228

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 9   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLP--GRDGIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 67  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 127 APEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 185

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 224


>gi|89093375|ref|ZP_01166324.1| DNA-binding response regulator BaeS [Oceanospirillum sp. MED92]
 gi|89082354|gb|EAR61577.1| DNA-binding response regulator BaeS [Oceanospirillum sp. MED92]
          Length = 229

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +   ++              V  ++  L   G+  +
Sbjct: 7   ILIVEDEVGLAEILRDYLEASGYLVTMIHNGLEVTGWVKQHNPAVILLDLMLP--GKDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S  P+I  +        L   + G DD V KP   RE++ARV A  RR+  
Sbjct: 65  EICKEIRTFSNTPIIMTTARVEEIDRLLGLELGADDYVCKPYSPREVVARVKATLRRIAA 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N      PI +  +     + GE   L   E R+++  + N+G+  +++Q+    Y 
Sbjct: 125 FSGNTPKTADPISLDEERFLAFIGGEQLELTPVEFRMMQTFLDNQGRVFSRSQLMDKAY- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
                V +  V++HI  LRKK++  L   + + S   +GY  +++
Sbjct: 184 TDQRVVSDRTVDTHIKNLRKKIQPHLPEGEVIHSVYGVGYKFEFS 228


>gi|293399743|ref|ZP_06643889.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306143|gb|EFE47386.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 224

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 99/224 (44%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +         ++  S++   + E           DV  ++  +       L
Sbjct: 3   ILLAEDEKELNRIVCERLREEQYSVDACLNGEEALAFLQVMEYDVVILDIMMPIV--DGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +RA+  QVP++ ++   S+Q  +   D+G DD + KP    E+LAR+  + R+  
Sbjct: 61  EVLQTLRANGKQVPVLMLTAKDSIQDRVKGLDAGADDYLVKPFAFDELLARIRVLLRKPS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   + ++ +        +   L  +E  +L Y+M N G  +++ ++   I+ 
Sbjct: 121 NRHTGFYQVDDLVLYPNTHKVLRADKEIHLSAKEFSLLRYMMQNTGIVLSREKLEQHIWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D + E NV++ +I  LRKK+        + + R +GY +  +
Sbjct: 181 -YDYSGESNVIDVYIRYLRKKIDEGHSHKLLHTIRGVGYVLKVD 223


>gi|168183919|ref|ZP_02618583.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795806|ref|YP_002863358.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672998|gb|EDT84959.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263831|gb|ACQ54864.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 235

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G  +E  F+ LE  E  Q      +  ++  +       
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQ-GENYHMVIMDIMMPV--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R IR  S+VP+I +S        +     G DD + KP    E++ARV    RR  
Sbjct: 63  IESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAI 122

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N           E G ++   +       G+   L  +E +IL+    N  +   K Q
Sbjct: 123 YYNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I+ +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 183 IYDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
 gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
          Length = 242

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 102/238 (42%), Gaps = 23/238 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   +          +G  ++   + LE  E   + A  D   ++  L   G   +
Sbjct: 5   LIVDDEQSILTLLAFNLEKEGYHVDTALDGLEGYEMALAHA-YDFIILDLMLPSMG--GM 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI RR+ 
Sbjct: 62  DICKKLRQEKIDAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMS 121

Query: 121 VSNNR----------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
             +N                  + G IR+     +  V+ E   +  +E  +L Y++   
Sbjct: 122 SKSNAEEALKTKDTIKEEAELVQVGDIRIDPSQYEVIVRDEKVDVTPKEFELLMYMIKRI 181

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            + +++ Q+  AI+  FD A E  +V+ HIS LR+K+  +      + + R  GY  +
Sbjct: 182 NRILSREQLLDAIWN-FDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGYKFE 238


>gi|220930052|ref|YP_002506961.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220000380|gb|ACL76981.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 234

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   + +       ++G ++  GFN    +E ++  A++ +  +   ++  GE  
Sbjct: 6   ILVIDDDKEIVELIRIYLQNEGYNVLVGFN---GDEGVEILAKQKIHLLILDIMLPGEDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L++ R IR    +P+I +S        +    +G DD + KP +  E++ARV +  RR  
Sbjct: 63  LQICRKIRESYIIPIIMVSAKSCDMDKIMGLGTGADDYLAKPFNPMELMARVKSQLRRSF 122

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +   N      + +  +     + G +  L   E  IL  L  + GK  + 
Sbjct: 123 YMNTQVLDKQHDENIINICGLSINKNNHTVSLLGNIVDLTPTEYEILLLLAGSPGKVFSV 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +IF +++         N V  HI ++R+KL  N      + +   +GY I+
Sbjct: 183 EKIFESVWKQKFYESN-NTVMVHIWRMREKLESNPKEPKIIKTIWGVGYKIE 233


>gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 232

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  S +  E G + +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|222056727|ref|YP_002539089.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221566016|gb|ACM21988.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 226

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G     F S        +    D+  ++  L        
Sbjct: 5   IMIVEDEPGIVDAIQYALETEGFETLCFPSGTQVVSSLADHAVDLIILDVGLPD--MSGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR    VP+I ++        +   + G DD + KP   RE+ ARV A+ RR   
Sbjct: 63  ELCKQIRQLRSVPIIFLTARADEIDRIVGLEIGADDYITKPFSPREVSARVKAVLRRTGT 122

Query: 122 SNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N  +  TG   V    R     G V  L R E  IL+  +   G   ++ Q+   ++  
Sbjct: 123 GNKPSPCTGTFAVNESKRQISYLGRVLDLSRYEFDILKTFIRRPGHVFSRDQLMQIVWEH 182

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            D +++   +++HI  +R KLR  + G DP+ + R  GY++
Sbjct: 183 PDCSLD-RTIDAHIKNIRAKLRTIEPGKDPIVTYRGTGYAL 222


>gi|118581556|ref|YP_902806.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504266|gb|ABL00749.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 228

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   + +        +G +    F+ +   E  + S + D+  ++  L   G   
Sbjct: 5   ILIIEDERDLAELLAFNLEKEGFAPRCAFDGISGLEAARDS-KPDLIVLDLMLP--GMLG 61

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ + +R     S++P++ ++        +  F+ G DD + KP   RE+  R+ AI R
Sbjct: 62  TEVCKALRKDTTTSRIPVLMVTAKGDEIDRVVGFELGADDYIVKPFSMRELCLRIRAILR 121

Query: 118 RLKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R  V           G I +  +            L   E ++L YL+  RG+ +++ Q+
Sbjct: 122 RCDVEQPTGSPLLTLGDIVIDRERHRVVSADAETDLTSTEFKLLLYLVERRGRVISRDQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              ++   D   +   V++HI++LR KL        + + R  GY I+ N
Sbjct: 182 LQDVWSYHD-VGDTRTVDTHITRLRGKLGAPGEQ--IKTVRGFGYKIEEN 228


>gi|330970055|gb|EGH70121.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 227

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++         +    +  ++  L   G   +
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIMLP--GRDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP++ I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 68  DICKELRSFSDVPIVMITARVEEIDRLLGLDPGADDYICKPFSPREMVARVKAILRRSSS 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S      G ++V          G    L   E R+L     + G+  ++  +   +Y   
Sbjct: 128 SEPHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL     G DP+ S   +GY ++
Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|320009468|gb|ADW04318.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 243

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 102/232 (43%), Gaps = 21/232 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           +++DD   V++        +G     +++G+++L   E    S   D+  ++  +     
Sbjct: 12  LIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKAE----SYAPDLIVLDIQMPR--M 65

Query: 59  KVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             L   R IR+  S  P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ R
Sbjct: 66  DGLTAARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLR 125

Query: 118 RLKVS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R   +         ++      +R+  + R+         L R E  +LE  +A+  + +
Sbjct: 126 RSSYAAAQGGDVPDDDVLSFADLRMDLNTREVTRGARRVELTRTEFTLLEMFLAHPRQVL 185

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + QI  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 186 TREQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 236


>gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional
           regulator [Teredinibacter turnerae T7901]
 gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Teredinibacter turnerae T7901]
          Length = 233

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D+  + +           ++      +    L  + R D+  ++  L   G   L
Sbjct: 5   ILVIEDQEEINELIALNLETLNYTVTRALDGDIGLNLSLNTRFDLIILDVMLP--GIDGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + +R A    P++ ++   S    +   + G DD + KP   RE+ ARV A+ RR+ 
Sbjct: 63  QICQKLRSAGVLTPILMLTAKKSEADRVVGLEVGADDYLTKPFSVRELQARVRALLRRVA 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       ++   G + +  +     +  E   L  +E  +L YL ++ G+  ++ 
Sbjct: 123 FNTQETNPTAGPDQLVFGDLSINKNKHVVTLADEEIKLTAKEFDLLLYLASSPGQVFSRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           Q+ SA++G +  +  E+ V SHI++LR KL  N      V +   +GY  
Sbjct: 183 QLLSAVWG-YHHSGYEHTVNSHINRLRAKLEPNASEPRYVLTVWGVGYKF 231


>gi|229099332|ref|ZP_04230263.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229118343|ref|ZP_04247699.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228665173|gb|EEL20659.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228684150|gb|EEL38097.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAIHIIETQSIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKYHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  S +  E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|260588963|ref|ZP_05854876.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331083315|ref|ZP_08332428.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540742|gb|EEX21311.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330404396|gb|EGG83941.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 229

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  +           D+  ++  L        
Sbjct: 4   ILIVEDEEAIADLEKDYLELSGFEVEIENRGDVGLKRALEEDYDLFILDLMLPEV--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICREIRNQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   +++    R   V GE      +E  +L +L  N  +   K ++F
Sbjct: 122 LIGTGIQENDIIEIRGLKIDKTARRVWVNGEEKNFTTKEFDLLTFLAQNPNRVFTKDELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 KEIWAM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 239

 Score =  232 bits (593), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +  +    +              D+  ++  L   G   +
Sbjct: 18  ILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDTFHEVNPDLVLLDLMLP--GLDGV 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IR+ S VP+I ++     Q  +   ++G DD V KP   +E+LARV+   RR   
Sbjct: 76  EICRLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 135

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +   G   +    +  L   E  +L  L  +  K   + ++ S ++G 
Sbjct: 136 GAAEHVRAGDLDIDVAGHQVKRGESIISLTPLEFELLVTLARSPWKVFTREELLSQVWG- 194

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +    +  +V  H+ +LR K+        +  + R +GY +
Sbjct: 195 YQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRV 235


>gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 222

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 11/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEKV 60
           ++I+D   ++D        +    + F + +    +        D+  ++  L       
Sbjct: 5   LVIEDEEGMRDILKTYLEKNNF--DAFFAEDGNTGIDMFKNNSFDIVLLDVMLPD--MSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + IR  S++P++ I+        L  F+ G DD V KP   RE++AR+ AI  R K
Sbjct: 61  WNVLKTIRESSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAILSRSK 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S+N      I + +D R  +V G+   L  +E  +L  L  N GK +++ +  + ++
Sbjct: 121 WAESDNLISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNVVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++   +   V++HI +LR+KL +K   D + +    GY +
Sbjct: 181 G-YEFFGDLRTVDTHIKQLREKLGDK--RDIIKTVWGYGYKL 219


>gi|229051662|ref|ZP_04195131.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228721695|gb|EEL73170.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 226

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLQ 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYDGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 101/231 (43%), Gaps = 22/231 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-------EGFNSLEFEEWLQSSAREDVSAIEAFLI 54
            ++++D   +          +G  +       +G  +LE E +       D+  ++  L 
Sbjct: 6   ILVVEDEKKIARVLSLELQYEGYEVTVKETGIDGLQALEEESF-------DLVLLDVMLP 58

Query: 55  GKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 LE+ R +R  +   P++ I+   S+   +   D G +D + KP    E+LAR+ 
Sbjct: 59  E--LSGLEVLRRVRKTNTATPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIR 116

Query: 114 AIYR----RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A  R      +          + V    RD +  G++  L  RE  +L +L+ ++ + + 
Sbjct: 117 AQLRLNINEQQEKETELSIADLTVNEKTRDIQRAGQMLELTPREYDLLVHLLKHQQQVLT 176

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+ +A++G FD   + NVV+ +I  LRKK+        + + R +GY +
Sbjct: 177 RDQLLTAVWG-FDYFGDTNVVDVYIRYLRKKVDYPFEKQLIHTVRGVGYVM 226


>gi|33863265|ref|NP_894825.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9313]
 gi|33640714|emb|CAE21169.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9313]
          Length = 245

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +++        +G  ++   +  E    L S  R     I   ++  G   
Sbjct: 19  LLVVEDDDAIRETIGEALCAEGFETILCGDGFEAVSILTSQPRHKFDLIILDVMLPGIGG 78

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +R    +  +  IS   +    +   + G DD + KP   RE++AR  A  RR 
Sbjct: 79  LDICRRLREFDPKTRIFMISARDNEIDRVLGLEVGADDYLVKPFSVRELVARCRAQLRRY 138

Query: 120 KVSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  ++       E G + ++ +       G+   L  +E +IL+ L+ +  + +++ QI 
Sbjct: 139 QERSDDSNAKMIEYGNLCLYIEECRVTKDGKDLSLAPKEYKILKLLLEHPRQVLSRDQIL 198

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+G  D   +   V+ HI  +R+K+  +      + + R  GY  
Sbjct: 199 ERIWG-DDYFGDTKTVDVHIRWIREKIEQDPSSPQCIHTVRGFGYRF 244


>gi|326202201|ref|ZP_08192071.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987996|gb|EGD48822.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 217

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G                     D+  ++  L   G    
Sbjct: 4   ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLP--GLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   I   ++ P I +S   S+   +  F  G DD + KP    E+LARV A+ RR + 
Sbjct: 62  EV---IEQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQR 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  E G +++          G+      +E  +LE L+ NR   +++ ++   ++G +
Sbjct: 119 TASCFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWG-Y 177

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   +   V+ HI KLRKKL      D + +   LGY ++ +
Sbjct: 178 DFEGDTRTVDVHIQKLRKKLEW---EDRIKTVYKLGYRLEVS 216


>gi|77969647|gb|ABB11026.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 248

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 18/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  I   G DG+        +         R D+ A++  L        
Sbjct: 18  ILIVEDEVAIADTIIYALGTDGMQTVHCTLGQAALDHLRDTRFDLVALDVGLPD--LSGF 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +   + G DD V KP   RE+ ARV  I RR   
Sbjct: 76  EVCRRLRTFSDVPVIFLTARHDEIDRIVGLEIGADDYVIKPFSPRELAARVRVILRRFYR 135

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                      + +DG      G    L R E  +L  L+ + G+  +
Sbjct: 136 TAAPESPLAPAPAPAATIAPGFTLDTDGARVSWLGHALDLTRYEFGLLALLVRHPGRIYS 195

Query: 170 KTQIFSAIY-GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + Q+   ++   FD A  +  V++HI  LR KLR      DP+ + R +GYS+
Sbjct: 196 REQLMDLVWHEAFDSA--DRTVDTHIKTLRAKLRAIDPERDPIRTHRGMGYSL 246


>gi|228996979|ref|ZP_04156612.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
 gi|229007887|ref|ZP_04165458.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
 gi|228753392|gb|EEM02859.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
 gi|228762858|gb|EEM11772.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
          Length = 232

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          DG  +  F +    E L      D+      ++      +
Sbjct: 6   ILIVDDDTDIVQLIEVHLKQDGFKV--FRAYNGVEALDILDSNDIQLTILDIMMPAMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR    +P++ +S   +    +    +G DD + KP    E++ARV A  RR   
Sbjct: 64  EVCRRIREQYNIPVMFLSAKTTEIDKVIGLSTGADDYITKPFSMMELVARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V  N+ +   + +    R   + G+   L + E  IL  +  NR +     +I
Sbjct: 124 FNQVPSEVHKNKIQIRGLEIDELSRKVLLYGKSINLTKTEYDILHLMAKNRNRVFTLEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           + +I+         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESIWRERAHESN-NTVMVHIARLRNKIEEDPKKSTIIQNVWGVGYKIE 231


>gi|167750198|ref|ZP_02422325.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
 gi|167656760|gb|EDS00890.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
          Length = 235

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F +         S   D++ ++  L        
Sbjct: 5   ILIVDDEKEIADLIEVYLENDGYTVHKFYNGMDALKCIESQNLDLAILDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E++ARV    RR   
Sbjct: 63  RICQKIREQYYYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVR 122

Query: 122 SNNRA------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            NN A            +   + +  +     + G+   L   E  IL YL  NRGK ++
Sbjct: 123 YNNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVIS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++F  I+G        N V +HI +LR+KL         + +   +GY+I+
Sbjct: 183 SEELFENIWGEK-FLDNNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIE 234


>gi|157155786|ref|YP_001463269.1| transcriptional regulatory protein YedW [Escherichia coli E24377A]
 gi|157161437|ref|YP_001458755.1| transcriptional regulatory protein YedW [Escherichia coli HS]
 gi|170019701|ref|YP_001724655.1| transcriptional regulatory protein YedW [Escherichia coli ATCC
           8739]
 gi|191169243|ref|ZP_03030996.1| heavy metal response regulator [Escherichia coli B7A]
 gi|194430371|ref|ZP_03062859.1| heavy metal response regulator [Escherichia coli B171]
 gi|297516682|ref|ZP_06935068.1| transcriptional regulatory protein YedW [Escherichia coli OP50]
 gi|300920190|ref|ZP_07136638.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300951603|ref|ZP_07165432.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300956508|ref|ZP_07168794.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|301327760|ref|ZP_07220962.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301644571|ref|ZP_07244563.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|307312448|ref|ZP_07592082.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|331668658|ref|ZP_08369506.1| transcriptional activator protein CopR [Escherichia coli TA271]
 gi|157067117|gb|ABV06372.1| heavy metal response regulator [Escherichia coli HS]
 gi|157077816|gb|ABV17524.1| heavy metal response regulator [Escherichia coli E24377A]
 gi|169754629|gb|ACA77328.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
 gi|190900721|gb|EDV60517.1| heavy metal response regulator [Escherichia coli B7A]
 gi|194411591|gb|EDX27925.1| heavy metal response regulator [Escherichia coli B171]
 gi|300316692|gb|EFJ66476.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|300412786|gb|EFJ96096.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300449146|gb|EFK12766.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300845693|gb|EFK73453.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301077107|gb|EFK91913.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|306907619|gb|EFN38122.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|315061264|gb|ADT75591.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli W]
 gi|320174282|gb|EFW49439.1| putative two-component system response regulator YedW [Shigella
           dysenteriae CDC 74-1112]
 gi|320185520|gb|EFW60287.1| Putative two-component system response regulator YedW [Shigella
           flexneri CDC 796-83]
 gi|323378157|gb|ADX50425.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli KO11]
 gi|323940374|gb|EGB36565.1| heavy metal response regulator [Escherichia coli E482]
 gi|331063852|gb|EGI35763.1| transcriptional activator protein CopR [Escherichia coli TA271]
          Length = 260

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|302669412|ref|YP_003829372.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302393885|gb|ADL32790.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 229

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D            ++  N+ +       +   D+  ++  L   G    
Sbjct: 4   ILIVEDEEAIADLEKDYLELSDFEVKIENTGDAGLETALAEEFDLIILDLMLP--GMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR    VP++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EVCKHIREKKDVPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYSR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +N+  E   +++    R   V  E      +E  +L +L  N      K ++F
Sbjct: 122 LVGSGHENNDFVEIRGLKIDKTARRVYVDDEEKSFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + D   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 RKIWNM-DSIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRF 227


>gi|300818609|ref|ZP_07098817.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300528781|gb|EFK49843.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
          Length = 260

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|299542039|ref|ZP_07052358.1| two-component response regulator; MrsR2 protein [Lysinibacillus
           fusiformis ZC1]
 gi|298725462|gb|EFI66107.1| two-component response regulator; MrsR2 protein [Lysinibacillus
           fusiformis ZC1]
          Length = 240

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD A + +        +G   +   +++            D+  ++  L     + 
Sbjct: 6   ILVVDDEADLANLLKVSLQKEGYKQIYTASTIRDAWTSFQQTTPDIILLDVMLPD--GEG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L R IR  S VP++ +S        +     G DD + KP   +E+  RV A  RR  
Sbjct: 64  YDLCRRIREVSHVPVLFMSAKNEEIDKILGLAIGGDDYITKPFSPKEVAYRVKAQLRRAG 123

Query: 121 VSNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          + GP ++ +D  +    G +  L  +E  ++   M N  + ++K 
Sbjct: 124 YQTQDTITNIVEKTLQIGPFQLNADETEVHKNGVLLELTAKEIGLMACFMNNPNRILSKE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +F  ++G  D    +N V  HI +LR+K+         + + + LGY  
Sbjct: 184 TLFERVWGE-DFFGSDNTVMVHIRRLREKIEEDASNPLYITTVKGLGYKF 232


>gi|225028279|ref|ZP_03717471.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353]
 gi|224954325|gb|EEG35534.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353]
          Length = 224

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++   +     +  +    D   ++A L   G+   
Sbjct: 3   ILVVEDEPDLNHIIAKHLQAEGYIVDSCFNGNDAVYYITEESYDAILLDAMLP--GKDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + IR+   + P++ ++     +  +   D G DD V KP    E+LAR+  I +R  
Sbjct: 61  EVLKEIRSQKIETPVMFLTARDQTEDIVTGLDFGADDYVVKPFSFEEVLARLRVIIKRSP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E   + + +D +     G    L  +E  ILEY++ N+   +++ QI S  +G
Sbjct: 121 QEHGTTYECADLLIDTDKKSVTRAGTDIELSPKEYAILEYMVRNKNIALSRLQIESNAWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D   E N+++ +I  LRKK+ +      + + R +GY +
Sbjct: 181 L-DFEDESNIIDVYIRYLRKKIDDDFDVKLIQTVRGIGYML 220


>gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G  +   ++         S   D+  ++  L   G   +
Sbjct: 5   ILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEVDLILLDVMLP--GMSGI 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R IRAH S   ++ ++   S++  +   D G +D + KP    E+LAR+ A  R   
Sbjct: 63  ELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQG 122

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +   E          +++    R+    G    L  RE  +L YL+ N+ + + + QI
Sbjct: 123 KPHPEEEPAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +A++G +D   + NVV+ +I  +RKK+      + + + R +GY +
Sbjct: 183 LAAVWG-YDYYGDTNVVDVYIRYVRKKIDYGGTQELIHTVRGVGYVL 228


>gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
          Length = 232

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAVHIIETQPIDLVILDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  S +  E G + +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|320095862|ref|ZP_08027495.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977208|gb|EFW08918.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 226

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G ++                  D+  ++  L   G    
Sbjct: 5   ILVVDDDVALAEMIGIVLEGEGYTVSTCPDGAKAVAAFQEHHPDLVLLDVMLP--GMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
           E+   +RA S VP++ ++        +   ++G DD V KP   RE++ARV A  R R  
Sbjct: 63  EVCAALRAESNVPIVMLTARSDTADVVTGLEAGADDYVPKPFKPRELVARVRARLRGRED 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R     + +   G        +  L   E  +L  L     K  ++ ++   ++G 
Sbjct: 123 AGEERIALADLEIDVPGHAVRRGDRLIALTPLEFDLLATLARTPSKVFSREELLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
           +  A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRSKIERDPEKPEIVVTVRGVGYR 221


>gi|242280512|ref|YP_002992641.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
 gi|242123406|gb|ACS81102.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio salexigens DSM 2638]
          Length = 232

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 101/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++          G  +    S E       ++   +  ++  +   G+  LE
Sbjct: 8   LIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMP--GKDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R HS VP+I ++        +   + G DD ++KP + RE+LAR+ A+ RR K  
Sbjct: 66  VLRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGP 125

Query: 123 NN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N      +     + +    +  E++G+   L   E ++L+ LM N G+ + +  + ++
Sbjct: 126 ENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLMTS 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           ++G  D    +  ++ HISKLR   +     +  + +    GY  
Sbjct: 186 VWGK-DFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMF 229


>gi|28798044|emb|CAD69002.1| beta-lactamase response regulator [Aeromonas hydrophila]
          Length = 224

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D A + D  I     DG  +E F+  +         R D   ++  L        
Sbjct: 6   IWLVEDEASIADTLIYALQTDGFEVEWFSLGQPLLARLEQTRPDFLILDVGLPD--ISGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +RA    PL+ ++        L   + G DD V KP   RE+ ARV  I RR + 
Sbjct: 64  ELCKQVRALCDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVRARVRVILRRSQP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +     +  + +  +       G+   L R E  +L+ LM   G+  ++ Q+   ++   
Sbjct: 124 TTPPP-SQLLALDEERARISFHGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWSAA 182

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            E+++   V++HI  +R KLR      + + + R  GYS++
Sbjct: 183 GESLD-RTVDTHIKTIRAKLRERDPHANLILTHRGFGYSLE 222


>gi|327440830|dbj|BAK17195.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 238

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 90/231 (38%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +G  +E   + E    +          ++  +  K    LE
Sbjct: 8   LIVDDEDRIRRLLKMYLEREGYLVEEAENGEQALSMALEKDYHCILLDIMMPEK--DGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +   +R     P+I ++        +  F+ G DD + KP   RE++ RV AI RR  V 
Sbjct: 66  VCAELREKKTTPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSAVF 125

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S +      + +  D       G    L  +E  +L +L  +  K   + Q+
Sbjct: 126 SPVSNSSSSKDLVVFPHLTIDHDAHRVTADGTEVNLTPKEYELLYFLAKSPDKVFDREQL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
              ++  +D   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 186 LKEVW-HYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFEV 235


>gi|320323415|gb|EFW79503.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327611|gb|EFW83623.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 225

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGYLFN 221


>gi|320353761|ref|YP_004195100.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320122263|gb|ADW17809.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 223

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S                 R D+  ++  L   G   +
Sbjct: 4   ILVVEDEQRLASILADYLHAAGYSTHCLGEGRGVVAWVRGNRPDLILLDLMLP--GRDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++        L   + G DD V KP   RE++ARV A+ RR   
Sbjct: 62  EICKEIRTFSTVPIIMVTARIEEIDRLLGLELGADDYVCKPFSPREVVARVKAVLRRT-- 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S        +RV +      + G    L   E ++L +L+A+ G+  ++ Q+   +Y   
Sbjct: 120 SARTPAPHGLRVDASTMRVSLDGHHLDLTAVEFKLLAFLLAHPGRIYSREQLMEGMY-PD 178

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              V +  ++SHI KLR+KL   + G + + S   +GY+ D
Sbjct: 179 QRIVNDRTIDSHIKKLRRKLDLARSGCNLIRSVYGVGYTFD 219


>gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7]
 gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050
           [Bacillus amyloliquefaciens DSM 7]
 gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens
           TA208]
          Length = 225

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD   +++    +    G  +      E    L  S   D+  ++  +       
Sbjct: 3   VILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMP--KMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   +R+ + +P++ ++        +  F SG DD + KP    E+ ARV A+ +R +
Sbjct: 61  FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  +    G + +    R     G     LPRRE  +L  L     K  ++  +   I+
Sbjct: 121 ITAEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   +E  V+ HI +LR++   K     + + R LGY  
Sbjct: 181 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGYRF 221


>gi|254706496|ref|ZP_05168324.1| Protein petR [Brucella pinnipedialis M163/99/10]
 gi|254711219|ref|ZP_05173030.1| Protein petR [Brucella pinnipedialis B2/94]
 gi|254711819|ref|ZP_05173630.1| Protein petR [Brucella ceti M644/93/1]
 gi|254714888|ref|ZP_05176699.1| Protein petR [Brucella ceti M13/05/1]
 gi|256030152|ref|ZP_05443766.1| Protein petR [Brucella pinnipedialis M292/94/1]
 gi|256158331|ref|ZP_05456235.1| Protein petR [Brucella ceti M490/95/1]
 gi|256252735|ref|ZP_05458271.1| Protein petR [Brucella ceti B1/94]
 gi|260166796|ref|ZP_05753607.1| transcriptional regulator, OmpR family protein [Brucella sp. F5/99]
 gi|261216578|ref|ZP_05930859.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261219814|ref|ZP_05934095.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261313949|ref|ZP_05953146.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261318811|ref|ZP_05958008.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261319448|ref|ZP_05958645.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261756174|ref|ZP_05999883.1| response regulator receiver [Brucella sp. F5/99]
 gi|265987182|ref|ZP_06099739.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265996845|ref|ZP_06109402.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|260918398|gb|EEX85051.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|260921667|gb|EEX88235.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292138|gb|EEX95634.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261298034|gb|EEY01531.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261302975|gb|EEY06472.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261736158|gb|EEY24154.1| response regulator receiver [Brucella sp. F5/99]
 gi|262551142|gb|EEZ07303.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|264659379|gb|EEZ29640.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
          Length = 227

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 134/225 (59%), Positives = 167/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+  L+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHILELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 101/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +     G  +   N+    E L+   +E V  +   ++       
Sbjct: 7   ILIVDDEFDMLELIGSFLRRQGFHIITANN--GMEALRQLEKEPVDLVVLDIMMPDMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  SQ+P++ ++     +  +   + G DD + KP   RE+ AR+    RR++ 
Sbjct: 65  EVCQRIRQTSQIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIETTLRRIRG 124

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +R + G + +  DGR   +  E   L RRE  +L +L+ N+G+  ++ Q++  ++
Sbjct: 125 LSLKRSRIQFGDMEIDQDGRQVYILQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                +     V++HI  LR KL  K     + +   +GY  +
Sbjct: 185 ESHSTSGSLRTVDTHIKTLRLKL--KGAERHIKTVWGVGYKFE 225


>gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
 gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
          Length = 231

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++      E    L +  R D++ ++  +  K    L
Sbjct: 3   ILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKK--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R +R+H   +P++ ++   S++  +   D+G DD + KP    E+LAR  +++RR  
Sbjct: 61  DVCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAA 120

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +        + +  + RD         L R E  +LE LM N  K +++  I
Sbjct: 121 RPAIQEGETREPLRFEDLTLNPETRDVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D     N +E +I  LR+K         + + R +GY++
Sbjct: 181 LEEVWG-YDFPTSGNALEVYIGYLRRKTEANNETRLIHTVRGVGYAL 226


>gi|56962941|ref|YP_174668.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909180|dbj|BAD63707.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 231

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D   A   ++G  +    + + EE  +  A   V  +   L+      +
Sbjct: 4   ILLVEDDPEISDLVKAHLENEGYRV--LTAADGEEAARLFANGGVDLVLLDLMLPKMNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L + IR HS VP++ +S   S          G DD + KP    E+ ARV A  RR   
Sbjct: 62  TLLKQIRVHSSVPILILSAKGSDLDKALGLGFGADDYIAKPFSLIELTARVQAAIRRATD 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       + G IR+  D       G+   L  +E ++L   M N  +   K Q++
Sbjct: 122 YTVAEAKEERVLQRGGIRLDVDAFMAYKNGQAVKLTAKEFQLLHVFMENPKRVFTKEQLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+       EENV+  HI +LR+K+  N    + +++   +GY +
Sbjct: 182 QQIWNEP-YLGEENVINVHIRRLREKIETNPSKPEIIETVWGIGYKL 227


>gi|188588979|ref|YP_001921296.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
 gi|188499260|gb|ACD52396.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
          Length = 233

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 98/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V +       +D ++    ++ + +E L+    E    +   L+       
Sbjct: 7   ILICDDNDTVNETIGTYLKNDEMTY--ISAYDGKEALEKFNAEKPDLVILDLMMPKIFGT 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++        +   + G DD + KP   RE++ R+  I+RR+  
Sbjct: 65  EVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVGN 124

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +N                +  D  +  +  E   +  +E +IL  L  N G+ +++ +I 
Sbjct: 125 ANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G +D   +  VV++ I ++RKK+  +     + +   +GY  + 
Sbjct: 185 DKVWG-YDYFGDTRVVDTQIKRIRKKIPEEGEKWSIKTVYGIGYKFEV 231


>gi|333023057|ref|ZP_08451121.1| putative two-component system, response regulator [Streptomyces sp.
           Tu6071]
 gi|332742909|gb|EGJ73350.1| putative two-component system, response regulator [Streptomyces sp.
           Tu6071]
          Length = 250

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++       G  G ++      +   +   S R D+  ++  L         
Sbjct: 17  LVVEDDASIRTLLTTALGAAGYTVASAVDGQAAMFQAGSRRPDLIVLDVMLPDT--DGFR 74

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +RA     P++ ++    ++  +    SG DD V KP H +E+L RV AI RR   
Sbjct: 75  LTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGA 134

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +            + +     +    G    L   E R+L   +A+  + + K +I  
Sbjct: 135 PASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQ 194

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D + +  +V++++  LR+KL +      + + R +GY +
Sbjct: 195 RVW-RYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCL 238


>gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++      +  S   DV  ++  +        
Sbjct: 5   ILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQV--DGF 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R +R   S  P++ ++    ++  +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 63  EALRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKT 122

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN+R     + + +D R+    G+   L  +E  +L   M N  + +++  I   I
Sbjct: 123 GDDSSNHRLTYEDLIMDTDAREVIRSGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D + E NV+E +I+ LR+K     G   + + R  GY +
Sbjct: 183 WG-YDYSGESNVLEVYIAMLRQKTEEHGGKRLIQTIRGAGYIL 224


>gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   ++      +  S   DV  ++  +        
Sbjct: 5   ILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQV--DGF 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R +R   S +P++ ++    ++  +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 63  EALRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKT 122

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN+R     + + +D R+    G+   L  +E  +L   M N  + +++  I   I
Sbjct: 123 GDDTSNHRLTFEDLVMDTDAREVIRGGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D + E NV+E +I+ LR+K     G   + + R  GY +
Sbjct: 183 WG-YDYSGESNVLEVYIAMLRQKTEEHGGKRLIQTIRGAGYIL 224


>gi|162453154|ref|YP_001615521.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161163736|emb|CAN95041.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 234

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 100/231 (43%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++  +     +G ++              +   D+  ++  L       L
Sbjct: 5   ILVVDDEARIREVLLYALQKEGYAVTAVADGRAAVEAAGAGTVDLVVLDVMLPE--LDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +RA S+ P++ +S        +   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 63  EVCRRLRAGSRTPILFLSARADEVDRIVGLELGGDDYLTKPFSPRELVARVRALLRRTEA 122

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              GPI V ++  +    G+   L   E  +L  L+   G  ++
Sbjct: 123 PPPAPAPASTGARAAVLRHGPIEVDTERHEARYLGQPVSLTATELGVLGALLERPGVVLS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+    Y  +D  + E  +++H+ ++R K R  +G DP+ +   +GY +
Sbjct: 183 RGQLMQRAY-RYDNLITERTIDTHVRRIRAKFR-VVGGDPIATVHGVGYKL 231


>gi|110642074|ref|YP_669804.1| transcriptional regulatory protein YedW [Escherichia coli 536]
 gi|110805939|ref|YP_689459.1| transcriptional regulatory protein YedW [Shigella flexneri 5 str.
           8401]
 gi|227885603|ref|ZP_04003408.1| response regulator [Escherichia coli 83972]
 gi|237705927|ref|ZP_04536408.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|300940426|ref|ZP_07155010.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300975470|ref|ZP_07173018.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300994173|ref|ZP_07180744.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|301050665|ref|ZP_07197529.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|306814209|ref|ZP_07448375.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|331647562|ref|ZP_08348654.1| transcriptional activator protein CopR [Escherichia coli M605]
 gi|26108643|gb|AAN80846.1|AE016762_99 Probable transcriptional Regulatory protein yedW [Escherichia coli
           CFT073]
 gi|110343666|gb|ABG69903.1| probable transcriptional regulatory protein YedW [Escherichia coli
           536]
 gi|110615487|gb|ABF04154.1| putative 2-component transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|226900684|gb|EEH86943.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|227837176|gb|EEJ47642.1| response regulator [Escherichia coli 83972]
 gi|281601411|gb|ADA74395.1| Two component heavy metal response transcriptional regulator,
           winged helix family precursor [Shigella flexneri
           2002017]
 gi|300297662|gb|EFJ54047.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|300304997|gb|EFJ59517.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|300410360|gb|EFJ93898.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300454767|gb|EFK18260.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|305852368|gb|EFM52819.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|307553979|gb|ADN46754.1| heavy metal response regulator [Escherichia coli ABU 83972]
 gi|312946560|gb|ADR27387.1| transcriptional regulatory protein YedW [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315286723|gb|EFU46148.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3]
 gi|315290199|gb|EFU49579.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1]
 gi|315296452|gb|EFU55752.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3]
 gi|323956362|gb|EGB52105.1| heavy metal response regulator [Escherichia coli H263]
 gi|324005926|gb|EGB75145.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2]
 gi|324013430|gb|EGB82649.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1]
 gi|331043286|gb|EGI15424.1| transcriptional activator protein CopR [Escherichia coli M605]
          Length = 260

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|293394940|ref|ZP_06639230.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291422691|gb|EFE95930.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 238

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +     +              +  ++  L   G   L
Sbjct: 10  IMIVEDEPKLGQLLVDYLQAAGYATRWLTNGSEVVAAVHQQPPALILLDLMLP--GSDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + R +R  +++P++ ++        L   + G DD + KP   RE++ARV  I RR  +
Sbjct: 68  SVCRELRRFTELPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYR 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + ++ E   + +         QG+V  L   E R+L+ L +  G   ++ Q+ + +Y  
Sbjct: 128 PAESQQEDALLHIDEPRFQASYQGQVLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDD 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +   V +  ++SHI  LR+KL    G    + S   +GY  +
Sbjct: 188 Y-RVVTDRTIDSHIKNLRRKLEALDGEKAFIRSVYGVGYRWE 228


>gi|83816273|ref|YP_446921.1| response regulator receiver domain-containing protein [Salinibacter
           ruber DSM 13855]
 gi|294508860|ref|YP_003572919.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
 gi|83757667|gb|ABC45780.1| response regulator receiver domain protein [Salinibacter ruber DSM
           13855]
 gi|294345188|emb|CBH25966.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
          Length = 247

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 99/221 (44%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V         ++G  +    +             D+  ++  L       L
Sbjct: 7   LLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPD--LSGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R H  ++P++ ++   +++  +    +G DD + KP    E+LAR+ A+ RR+ 
Sbjct: 65  EVCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVD 124

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   R E GP+ +    R     GE   L   E  +L +LMA  G+ +++  I   ++
Sbjct: 125 RPSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G  D     N+++ +++ +R+KL       P+++ R +GY 
Sbjct: 185 G-HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYR 224


>gi|75764446|ref|ZP_00743942.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488065|gb|EAO51785.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 229

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 98/219 (44%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G   + + +++  + L+      V  +   ++       
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGF--QTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R ++
Sbjct: 72  DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   I+G 
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +D    E  ++ HI++LR+K + +     + + R LGY 
Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYR 229


>gi|152965198|ref|YP_001360982.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151359715|gb|ABS02718.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 254

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 21/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V+++D   + D        +G ++E          L      DV  ++  L   G   LE
Sbjct: 21  VVVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLP--GFDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE++ARV  + RR++ +
Sbjct: 79  VCRRVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERA 138

Query: 123 NN--------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                               G + +    R     G    L   E  +L  L  +    +
Sbjct: 139 RALVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVL 198

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++   ++   D +     V+SH+  LR+KL    G D V +   +GY+ +
Sbjct: 199 TREKLLEEVWDWADASG-TRTVDSHVKALRRKL----GADLVRTVHGVGYAFE 246


>gi|300923861|ref|ZP_07139879.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300419894|gb|EFK03205.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
          Length = 260

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|238789085|ref|ZP_04632874.1| Two-component response regulator of virulence determinant [Yersinia
           frederiksenii ATCC 33641]
 gi|238722849|gb|EEQ14500.1| Two-component response regulator of virulence determinant [Yersinia
           frederiksenii ATCC 33641]
          Length = 223

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLP--GEDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   +  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIDFPPFQIDLSRRELSVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL+ +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQAEHEGEVITTIRGQGYRFDAN 223


>gi|256787359|ref|ZP_05525790.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLP--GRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221


>gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 255

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R DV  ++  L       L 
Sbjct: 30  LVVDDEAPLSELLSMALRYEGCEVRSAGDGAGAVRAAREFRPDVVVLDVMLPD--MDGLA 87

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R   QVP++ ++   S++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 88  VLGRLRREIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGA 147

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +      +    G +R+  D  +    G+   L   E  +L YLM N  + ++K QI   
Sbjct: 148 AQAARGGSVLTVGDLRLDEDSHEVVRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDR 207

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           ++  +D   + NVVE +IS LR+KL    G  P + ++R  GY I
Sbjct: 208 VW-SYDFGGQANVVELYISYLRRKLEGGTGLPPMIHTRRGAGYLI 251


>gi|219854217|ref|YP_002471339.1| hypothetical protein CKR_0874 [Clostridium kluyveri NBRC 12016]
 gi|219567941|dbj|BAH05925.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 235

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  ++    +   E+ +     ++   +   L+      +
Sbjct: 11  ILIVEDDEEINNLIYNTLKREKYNM--IQAFNGEDAINKYHSDNFQLVILDLMLPYIDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  S VP+I +S        +     G DD + KP   RE+ ARV +  RR   
Sbjct: 69  EVLRKIRESSTVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 128

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N   +   +++ +       + +   L  +E ++L+  + N  +   K QIF+
Sbjct: 129 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++       ++N V  HI +LR K+ +       + +   +GY +
Sbjct: 189 NVWENK-YIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKL 233


>gi|196031972|ref|ZP_03099386.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218904351|ref|YP_002452185.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|195994723|gb|EDX58677.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218539685|gb|ACK92083.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 224

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIP--GINGLQ 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|160881553|ref|YP_001560521.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430219|gb|ABX43782.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 233

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D   A    + +      + + EE ++   + + + +   ++   E   
Sbjct: 4   ILIADDNPDITDVLAAYAKKEDLVP--VIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA S VP+I I+        +   D G DD + KP    E++AR+ AI RR+  
Sbjct: 62  EVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTK 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + S N      + +  +     + G    L ++E   +  L +N  K   +  +  
Sbjct: 122 KENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
           +++G FD   +   V+SHI +LR KL      +  + +   +GY  + +
Sbjct: 182 SLWG-FDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVD 229


>gi|150018483|ref|YP_001310737.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904948|gb|ABR35781.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 229

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++  F +   EE L    +E++  I   ++      L
Sbjct: 4   ILVVDDEKEIRNLLEINLRNEGYNV--FKASCGEEALDILEKEEIHLIVLDIMMPHMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P++ +S        +    +G DD V KP +  E++ RV A+ RR   
Sbjct: 62  EVCRRVREKYNIPILMLSAKSEDMDKIQGIMTGADDYVCKPFNQLELIVRVKALMRRSYF 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +VS +      + +        +  +   L  RE  IL  L  NRG   +  +IF
Sbjct: 122 LNLKMQVSEDLIRIESMVIDKSKHKVTIDDKEVDLTAREFEILYLLATNRGIVFSAEEIF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++         N V  H+S+LR K+ + + G   + +   +GY I+
Sbjct: 182 EKVWKER-YYQSNNTVMVHMSRLRDKIEHHMEGNKIIHTIWGVGYKIE 228


>gi|125974351|ref|YP_001038261.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005570|ref|ZP_05430530.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418898|ref|ZP_06249916.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714576|gb|ABN53068.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990478|gb|EEU00600.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407355|gb|EFB37615.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941509|gb|ADU75543.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 234

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +     G  +  + +   +E L    +  +S I   L+       
Sbjct: 8   ILVVDDEKKIVEVVKSYLEHSGYEV--YEAFTGKEALYVFEKVPLSLIVLDLMLPDLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR  S+VP+I ++     +  L   + G DD + KP   ++++ARV A+ RR   
Sbjct: 66  EICKIIRKKSRVPIIMLTAKAEEEDILKGLNIGADDYITKPFSPKQLVARVTAVLRRTSD 125

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + + S   +      V  L   E +IL  L+   GK   + ++ +
Sbjct: 126 DPVPLSNIFSFNNGDLVIDSLKYEVRKGNNVVNLTPNEYKILMTLVKYPGKTFTRDELIN 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              G  D    +  V++HI  LR+K+  +      + +   +GY  +
Sbjct: 186 MALG-DDFDGFDRTVDTHIKNLRQKIETDPKSPKYILTVHGVGYRFE 231


>gi|303240217|ref|ZP_07326737.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592308|gb|EFL62036.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 106/234 (45%), Gaps = 26/234 (11%)

Query: 2   FVLIDDR---------ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++I+D           LV +GY  +  +DG S  G +    EE+       D+  ++  
Sbjct: 5   ILIIEDELKIARFLELELVHEGYDVVLENDGRS--GCDKALAEEF-------DLLILDLM 55

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L       +E+ R IR  SQVP+I ++    +   +   D+G +D + KP    E+LAR+
Sbjct: 56  LP--CISGIEVCRRIRRQSQVPIIILTAKDDVSDKVMGLDTGANDYMTKPFAIEELLARM 113

Query: 113 AAIYRRLKVSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             I +R    N     N    G + +  D        E  PL ++E ++L YLM N G  
Sbjct: 114 RGILKRYGTINVPNDSNVLSAGKLTLDPDKFKVTYDNEDIPLTKKEFQLLMYLMNNEGLL 173

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + +I   I+G+ D     NV + +I  LR K+ +K G   + + R +GY  +
Sbjct: 174 ITREKILENIWGI-DYMGLTNVTDVYIRYLRTKIDDKYGVKLIHTIRGMGYKFN 226


>gi|282861073|ref|ZP_06270138.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282563731|gb|EFB69268.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 245

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D   A    +G  ++             S + D+  ++  L   G   LE
Sbjct: 22  LVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAESWQPDLMVLDIMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|149187001|ref|ZP_01865309.1| two-component response regulator [Erythrobacter sp. SD-21]
 gi|148829390|gb|EDL47833.1| two-component response regulator [Erythrobacter sp. SD-21]
          Length = 226

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 108/222 (48%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +    +G +++     E   +L S+   D   ++  L       L
Sbjct: 3   ILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHFLGSTEDYDAVILDLGLPE--IDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  + R    + P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +      ++GE   L  +E ++L YLM ++GK V++T++   IY 
Sbjct: 121 GNTSSELTAGEVRLDTRSGRVTLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G + + + R LGYS+D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GAEVITTIRGLGYSLD 217


>gi|126700822|ref|YP_001089719.1| two-component response regulator [Clostridium difficile 630]
 gi|115252259|emb|CAJ70100.1| Two-component response regulator [Clostridium difficile]
          Length = 223

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  +      G +    +       +  S   D+  ++  +        
Sbjct: 4   ILVVEDEKRMQNIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPY--LDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R+ R  + +P+I ++     +  L  ++ G DD + KP   + +LA+V A+ RR   
Sbjct: 62  SVCRVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  N    G I +    R   V+ ++  L  +E  +L   M N  +  ++ ++ + I+G
Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D       V++HI  LRKKL ++     + +    GY  + 
Sbjct: 182 -YDFEGNTRTVDTHIKTLRKKLGSEGHH--IVTLIRSGYKFEV 221


>gi|329849819|ref|ZP_08264665.1| feuP protein [Asticcacaulis biprosthecum C19]
 gi|328841730|gb|EGF91300.1| feuP protein [Asticcacaulis biprosthecum C19]
          Length = 226

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D   +     A   D G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   ILLAEDDPDLSRQLKASLSDAGYVVDHAPDGEEAHFLGDTEPYDCIILDLGLPKIDGVSV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  R  R     P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ RR  
Sbjct: 63  LE--RWRREGKMTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G +R+        V GE   L   E R+L YLM ++ + +++T++   +Y 
Sbjct: 121 GHAQPLLVCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQNRVISRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFMGRLRKKI----GNDRIETVRGLGYRL 216


>gi|300088402|ref|YP_003758924.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528135|gb|ADJ26603.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 231

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 98/230 (42%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   + D        +G S+           L    + D+   +  +   G    
Sbjct: 4   IAVVEDDRNLADLLKYNLSREGFSVVTATDGSAGLALIRREKPDIIISDVMMP--GMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  +  P++ ++        +   + G DD ++KP   RE++ARV A+ RRL++
Sbjct: 62  ELTRTLRTETTAPVLLLTARSEEIDKVLGLEMGADDYLSKPFSMRELVARVKAMLRRLEM 121

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               G + + ++     V G+   L  RE  +L YLM NRG+  ++  
Sbjct: 122 TAGTEAGIPAGLTLRLGGLELDAERHRLTVGGQEVELSPREFDLLAYLMNNRGRVFSRQS 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +   ++G +D   +E  V+ H+  LR+K+         + + R +GY  +
Sbjct: 182 LVDRVWG-YDYPGDERTVDVHVRWLRQKIETDPARPHHLVTVRGVGYKFE 230


>gi|320194319|gb|EFW68950.1| Putative two-component system response regulator YedW [Escherichia
           coli WV_060327]
          Length = 260

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHT 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 233

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +   + +  + LQ    +D   I   ++      +
Sbjct: 10  ILIVDDDKEIRNLISVYLENEGLKTQ--KAEDAIQALQLLEEKDFDLIILDIMMPNMDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 68  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|209523452|ref|ZP_03272007.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209496194|gb|EDZ96494.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 628

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 107/225 (47%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A+       ++  N  +       S+  D+  ++  L       +
Sbjct: 3   ILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPL--LDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L   +R+H+ QVP++ ++   + Q  +   D+G DD + KP+   E+ AR+ A+ RR  
Sbjct: 61  SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +++      + + +   D    G+   L  +E  +LE LM NR +  +  +I   ++ 
Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
            FD+    N V +HI  LR+KL+    G + +++   LGY ++ N
Sbjct: 180 TFDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224



 Score = 84.2 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   +      L    G+     +          S+  D+  ++  +       +EL
Sbjct: 500 IVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPH--LNGIEL 557

Query: 64  PRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +I+R   +   +P++ ++     Q     F +G DD + KP    E+  R+    +R +
Sbjct: 558 CQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRTQ 617

Query: 121 VSNNRAETGPI 131
               R +    
Sbjct: 618 NLATRTDFAYH 628


>gi|331677849|ref|ZP_08378524.1| transcriptional activator protein CopR [Escherichia coli H591]
 gi|331074309|gb|EGI45629.1| transcriptional activator protein CopR [Escherichia coli H591]
          Length = 260

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|254392878|ref|ZP_05008047.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706534|gb|EDY52346.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 229

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLP--GRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|170760425|ref|YP_001786436.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407414|gb|ACA55825.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 233

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +G  +      E    L       +  ++  L     +  
Sbjct: 7   ILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKIFGE-- 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S VP+I ++     +  L+    G DD + KP   RE++ARV A+ RR   
Sbjct: 65  EVCSKIREFSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 122 SNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +          G + V          G+V  L   E ++L  L+ N G+   + Q+  
Sbjct: 125 GEHPLAEHLILNNGDLEVDIRKMKVLKSGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +G +D       V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
 gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
          Length = 232

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|310658178|ref|YP_003935899.1| DNA-binding response regulator in two-component regulatory system
           with baes [Clostridium sticklandii DSM 519]
 gi|308824956|emb|CBH20994.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Clostridium sticklandii]
          Length = 227

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   ++D        +G +   F S   +  L +        +   ++ +G   L
Sbjct: 4   IFIVDDEKRIRDLIEMYLKKEGYNTTTFES--ADGVLSAIREFMPDLLVLDIMMQGLDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S+VP+I +S        +   + G DD + KP   RE++ R+  I +R   
Sbjct: 62  DLCKEIRKISEVPIIFVSARSDELDRILGLELGADDYLAKPFSPRELVVRIKTILKRTTK 121

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S    +   +T  + ++   R  +  G+  PL  +E  +LE+LM N    +++ QI  +I
Sbjct: 122 SSEHNDEILKTKDLEIYVQRRIVKCMGQDIPLTIKEYEVLEFLMKNINLPLSREQIIESI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D    +  V+  I +LRKKL+       + +    GY ID N
Sbjct: 182 WG-YDYDGYDRNVDDTIKRLRKKLKTAKSRVVIKTVWGYGYRIDDN 226


>gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
          Length = 232

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAIHIIETQPIDLVILDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  S +  E G + +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|226313242|ref|YP_002773136.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226096190|dbj|BAH44632.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 234

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF--EEWLQSSAREDVSAIEAFLIGKGEK 59
             +I+D   + +        +G ++      +    ++ Q+  R D+  ++  +      
Sbjct: 8   IFIIEDDQAIVEMVETYLTKEGYAVTVAGDGDEGLRKFEQAQGRFDLLLVDLMMP--KID 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ R IRA+S VP++ +S   S          G DD + KP    E+ AR+ AI RR 
Sbjct: 66  GMEVIRRIRAYSHVPILIMSAKDSDIDKALGLGFGADDYIEKPFSMIELSARLKAIIRRA 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  +N    G +R+  D      Q E   L  +E  IL    A+  +   K QI
Sbjct: 126 TQYASVETKHNTLNMGDLRIDFDSFAVFKQEEPIKLTSKEFEILRLFAAHPNRVFTKAQI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           ++ ++   D   +ENV+  H+S+LR K+ +       + +   +GY  +
Sbjct: 186 YAKVWN-DDYYGDENVINVHMSRLRDKIEDNPSEPRYIKTLWGIGYKWE 233


>gi|126650116|ref|ZP_01722349.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
 gi|169827294|ref|YP_001697452.1| transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
 gi|126593288|gb|EAZ87250.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
 gi|168991782|gb|ACA39322.1| Transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
          Length = 240

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +G  ++   + E               ++  +  K    LE
Sbjct: 10  LVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEK--DGLE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +   IR  +  P+I ++        +  F+ G DD + KP   RE++ RV AI RR +  
Sbjct: 68  VCAEIRERAATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSQAF 127

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S +      + +  D      +G    L  +E  +L +L  +  K   + Q+
Sbjct: 128 SPTTNASSSKDLVVFQHLMIDHDAHRVTAEGIEVNLTPKEYELLYFLAKSPDKVFDREQL 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
              ++  +D   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 188 LKEVW-HYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFEV 237


>gi|86750565|ref|YP_487061.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573593|gb|ABD08150.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 257

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +         D G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 31  LLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGISV 90

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R  R    +P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 91  LEAWR--RNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 148

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V+G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 149 GHAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 208

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 209 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 244


>gi|309795924|ref|ZP_07690337.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|308120374|gb|EFO57636.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|320198658|gb|EFW73258.1| Putative two-component system response regulator YedW [Escherichia
           coli EC4100B]
          Length = 260

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255


>gi|300714596|ref|YP_003739399.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299060432|emb|CAX57539.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 220

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+ DG  A     G S++ F   +      S+A  D   ++  L   G   L
Sbjct: 3   ILVIEDDRLIGDGIKAGLIKMGFSVDWFTEGKEGLAALSAAPYDAVVLDLSLP--GMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R      P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILRQWRQQGQDEPVLILTARDALEQRVTGLQQGADDYLCKPFALSEVAARLQALIRRRH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + + S      + GE   L  RE  +LE  + N G+ + + Q+   +Y 
Sbjct: 121 GQLHPLLSHGAVVMESGSHRVTLNGEPLELKSRELALLELFLMNTGRVLTRAQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LRKKL    G   + +   +GY++
Sbjct: 180 SWDEDVSSNAVEVHIHHLRKKL----GSQFIRTIHGVGYTL 216


>gi|291556132|emb|CBL33249.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 235

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F +         S   D++ ++  L        
Sbjct: 5   ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGMDALKCIESQNLDLAILDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E++ARV    RR   
Sbjct: 63  RICQKIREQYYYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVR 122

Query: 122 SNNRA------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            NN A            +   + +  +     + G+   L   E  IL YL  NRGK ++
Sbjct: 123 YNNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVIS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++F  I+G        N V +HI +LR+KL         + +   +GY+I+
Sbjct: 183 SEELFENIWGEK-FLDNNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIE 234


>gi|313122882|ref|YP_004033141.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphop [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279445|gb|ADQ60164.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 242

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 99/233 (42%), Gaps = 19/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +E   + + EE ++     +   +   L+   +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVE--TAYDGEEAVEKVEEYNPDLMILDLMLPKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  R    
Sbjct: 63  EVAREVRQTHDMPIIMVTAKGSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122

Query: 120 -------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                        +  +N  + G + +  D    E  GE   L  RE  +L Y+  +  +
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFDLLYYMAQHMDQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
            + +  +   ++G +D   +   V+  + +LR+K+ +      +  ++R +GY
Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234


>gi|299538375|ref|ZP_07051658.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
 gi|298725962|gb|EFI66554.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
          Length = 238

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +G  ++   + E               ++  +  K    LE
Sbjct: 8   LVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEK--DGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +   IR  +  P+I ++        +  F+ G DD + KP   RE++ RV AI RR +  
Sbjct: 66  VCAEIRERAATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSQAF 125

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S +      + +  D      +G    L  +E  +L +L  +  K   + Q+
Sbjct: 126 SPTTNASSSKDLVVFQHLMIDHDAHRVTAEGIEVNLTPKEYELLYFLAKSPDKVFDREQL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
              ++  +D   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 186 LKEVW-HYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFEV 235


>gi|294634562|ref|ZP_06713097.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685]
 gi|291092076|gb|EFE24637.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685]
          Length = 285

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G +L+ F+          +A  D   ++  L   G   LE
Sbjct: 70  LLIEDDRLIGDGIKAGLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLP--GIDGLE 127

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R  R      P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR   
Sbjct: 128 ILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNHG 187

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +   G + +        + G    L  +E  +LE L+ N G+ + ++ I   +Y  
Sbjct: 188 QTQTQLSHGAVTLDPLSLTATLDGAPLLLKPKEFALLELLLRNAGRVLPRSLIEEKLYN- 246

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  V  N VE HI  LR+KL +      + +   +GY++
Sbjct: 247 WEGDVSSNAVEVHIHHLRRKLGSAF----IRTVHGVGYTL 282


>gi|317127238|ref|YP_004093520.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472186|gb|ADU28789.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 224

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEK 59
            +L++D   +  G       D   ++  ++    ++ +    +  D+   +  L      
Sbjct: 3   ILLVEDDKTIASGLEYSLQQDHFDTVLCYDIQSAQKIINHEISSIDLCLFDLSLPD--GS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             EL ++++  S  P+I ++ Y      +   D G DD + KP   RE+L+R+ ++ RR 
Sbjct: 61  GYELCKLVKQKSDTPVIFLTAYDDEVNVVMGLDMGADDYITKPFRIRELLSRIKSVLRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   I++ +        GE   +   E R+L     + G+ + + Q+   I+ 
Sbjct: 121 NKQTTIIKLHNIQINTLEGKVYKNGEEIIITALEYRLLLIFANHVGQVLTREQLLERIWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +  + V +N +  +I +LR+KL +       + + R LGY +
Sbjct: 181 VAGDYVNDNTLTVYIKRLREKLEDNPQKPTLIKTVRGLGYKV 222


>gi|262370815|ref|ZP_06064139.1| positive response regulator for the pho regulon [Acinetobacter
           johnsonii SH046]
 gi|262314177|gb|EEY95220.1| positive response regulator for the pho regulon [Acinetobacter
           johnsonii SH046]
          Length = 236

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  + G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPG-GVSGV 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +     +   + +    +          +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKSIDANGLILDPVSQRVSFGNNFLDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWGG-NVYIEDRTIDVHIRRLRKVLEPYAADRFVQTVRGTGYRF 227


>gi|310827229|ref|YP_003959586.1| response regulator [Eubacterium limosum KIST612]
 gi|308738963|gb|ADO36623.1| response regulator [Eubacterium limosum KIST612]
          Length = 233

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G  + G +            R D+  ++  L   G+  L
Sbjct: 4   ILIIEDELNIFELIKFNLEAQGFEVAGVHEGTGAVEKIVDIRPDLIILDLMLP--GKDGL 61

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +RA      +P+I ++        +   + G DD + KP   +E+ ARV A+ RR
Sbjct: 62  TICREVRADKNLSYIPVIMLTAKSEEFDKVLGLEMGADDYMTKPFSVKELYARVKAVLRR 121

Query: 119 LKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++           G +R+     +    G+   L  +E  +L YL  N+ K + + Q+ 
Sbjct: 122 TEMIKSSDTEEIAVGSLRILPGSFEVYKNGKKLSLTLKEYELLLYLANNKNKVLTRDQLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             I+G ++   E   V+ HI  LRKK+ +      +++ R +GY +  N
Sbjct: 182 DEIWG-YEYYGETRTVDVHIRYLRKKIEDDQEK-YIETVRGVGYRLVEN 228


>gi|229092184|ref|ZP_04223365.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229122743|ref|ZP_04251952.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228660607|gb|EEL16238.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228691175|gb|EEL44939.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 226

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GINGLQ 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|206891181|ref|YP_002249203.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743119|gb|ACI22176.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 227

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  I      G      +              D+  ++  L  K     
Sbjct: 5   ILVVEDEPKLANLLIDYLKASGFEAFWLDDGARVIQWTKENCPDLIILDVMLPNK--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR+ S +P+I ++        +   + G DD + KP   RE++ARV AI+RR+  
Sbjct: 63  EICREIRSFSTIPIIMVTARIEEVDRIVGLELGADDYICKPFSPRELIARVKAIFRRMNF 122

Query: 122 SNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++A + P    +  +     + G+   L   E R+L+ L++N G+   ++Q+   +Y 
Sbjct: 123 KDDKAISFPSGFYLDENSLKAFLNGQELHLTTVEFRLLKILISNPGRVFTRSQLMDIMY- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +  V +  ++SHI KLRKK++      + + S    GY  +
Sbjct: 182 PDNRIVSDRTIDSHIKKLRKKIKEISPEKEVIYSVYGAGYKFE 224


>gi|154687436|ref|YP_001422597.1| YvrH1 [Bacillus amyloliquefaciens FZB42]
 gi|154353287|gb|ABS75366.1| YvrH1 [Bacillus amyloliquefaciens FZB42]
          Length = 239

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G       +   EE ++    E    +   ++ +G    
Sbjct: 6   ILIVDDEKAIVDMVKRVLVKEGY-HNIKTAGSAEEAIEFVKHETADLLVLDVMMEGMSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR ++  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R   
Sbjct: 65  EACTEIRNYTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLKRTYK 124

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +                  +  V GE      +  ++L+Y   +    ++K QI+  
Sbjct: 125 REEKTAVKTYSYSHFSYSPQNAELIVGGEPVSCSAQLLQLLQYFCEHPDVVLSKDQIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G +    + N V  HI KLR+K+  +      + + R LGY  
Sbjct: 185 VWG-YPSYGDNNTVMVHIRKLREKIEKDPSNPSYIVTVRGLGYRF 228


>gi|83649045|ref|YP_437480.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83637088|gb|ABC33055.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D AL++          G +++     E   +L      D++ ++  L  +    L
Sbjct: 3   ILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKR--TGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ +  R    + P++ ++     Q  +   ++G DD + KP H  E++AR+ A+ RR  
Sbjct: 61  EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+   + GP+ + +  +  ++ G    L   E   LEYL+   G+ V+KT++   +Y 
Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + NV+E  I +LRKKL       P+ + R  GY  +W+
Sbjct: 181 Q-DFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGYRFNWS 223


>gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
           Broad-1]
 gi|325948598|gb|EGD40699.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
           Broad-1]
          Length = 244

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 101/223 (45%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +  +     +G  +   ++             D   ++  L       LE
Sbjct: 22  LVVDDEVNIAELIMMALRYEGWEVAAAHTGTKAVSAARDFTPDAIVLDWMLPDF--DGLE 79

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+ +  VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 80  VLRRVRSTNPAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRALMRRAGA 139

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    ++    G + +  D R+    GE   L   E  +L +LM N  + ++K QI   +
Sbjct: 140 TRIEEHSVIHVGDLTMDEDSREVRRAGEEISLTATEFELLRFLMRNPRRVLSKAQILDRV 199

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 200 W-SYDFGGQANVVELYISYLRKKI-DAGREPMIHTMRGAGYVL 240


>gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20]
 gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 226

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +  +    +              D+  ++  L   G   +
Sbjct: 5   ILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVNPDLVLLDLMLP--GLDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IR+ S VP+I ++     Q  +   ++G DD V KP   +E+LARV+   RR   
Sbjct: 63  EICRLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 122

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +   G   +    V  L   E  +L  L  +  K   + ++ S ++G 
Sbjct: 123 GAAEHVRAGDLDIDVAGHQVKRGESVISLTPLEFELLVTLARSPWKVFTREELLSQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +    +  +V  H+ +LR K+        +  + R +GY +
Sbjct: 182 YQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRV 222


>gi|260578371|ref|ZP_05846285.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603393|gb|EEW16656.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 235

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D         G  +E  ++ +    L ++ + D   ++  +   G     
Sbjct: 12  LVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMP--GMDGFT 69

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P + ++    ++  +     G DD V KP    E++ R+  I RR+  
Sbjct: 70  LLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSS 129

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + +         I +  D  +    GE+  L   E ++L YL+ N    ++K +I   +
Sbjct: 130 EDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+ +K     + + R +GY +
Sbjct: 190 WN-YDFGGDGNVVESYVSYLRRKI-DKEEPHLIQTVRGVGYVL 230


>gi|257467841|ref|ZP_05631937.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 221

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G S++     E    L      D+  ++  +        
Sbjct: 4   ILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIMMP--KIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  SQVP+I ++        L  F+   D+ + KP + + ++A+V A+ RR   
Sbjct: 62  SVCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V     E G + + +  R+ ++   V  L  +E  +L + + N+G  +++ +I ++++G
Sbjct: 122 IVDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LRKK+    G + + + R  GY  +
Sbjct: 182 -WDYFGDSRTVDTHIKRLRKKI----GDNFIQTVRGFGYKFE 218


>gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
 gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
          Length = 237

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   +++ E  LQ   + + S +   L+      +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVD--TAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFLV 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  N      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGYKF 230


>gi|319776032|ref|YP_004138520.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3047]
 gi|329123190|ref|ZP_08251759.1| two component response regulator [Haemophilus aegyptius ATCC 11116]
 gi|317450623|emb|CBY86843.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3047]
 gi|327471535|gb|EGF16979.1| two component response regulator [Haemophilus aegyptius ATCC 11116]
          Length = 220

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 102/220 (46%), Gaps = 8/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L       L
Sbjct: 3   ILLIEDDNLIGNGLQIGLTTLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLP--KLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R+ H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRYG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++  E   +++  + R   +  +   L  RE ++LE  M N+ + ++++ I   +   
Sbjct: 121 YHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKL-SS 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 180 WDEEISSGALDVHIYNLRQKL----GKQFIRTIHGVGYAL 215


>gi|300853845|ref|YP_003778829.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433960|gb|ADK13727.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 229

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
            ++I+D   + +       ++  ++    + + ++ L+       +  ++  L       
Sbjct: 6   ILVIEDDEEINNLIYNTLKNENYNI--VQAFDGKDALEKYDNTFQLIILDLMLPY--IDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR +S VP+I +S        +     G DD + KP   RE+ ARV A  RR  
Sbjct: 62  IEVLRKIRENSTVPVIILSAKNEETDRVIGLSMGADDYMIKPFSTRELAARVKAQLRRYI 121

Query: 121 VSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             NN            +++ +       + +   L  +E  +L++ + N  +   K QIF
Sbjct: 122 YYNNVHDKNPTLTYKSLKLDTSNHKFFKEDKELNLTPKEFELLKFFLKNPDRVFTKAQIF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + ++   D   ++N V  HI +LR K+ +       + +   +GY +
Sbjct: 182 NGVW-ENDYLHDDNTVMVHIKRLRNKIEDNPNNPKYIVTVWGIGYKL 227


>gi|313679439|ref|YP_004057178.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313152154|gb|ADR36005.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 222

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 102/221 (46%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A    +G  L    + +    L  +   D+  ++  L       L
Sbjct: 4   ILIVDDDPAIREILRAYLSHEGYELS--EAADGVSALALAPAADLVVLDLMLPE--MDGL 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R    ++P++ ++     +  +  F+ G DD V KP   RE++ARV A+ RR  
Sbjct: 60  EVARHLRRDFPELPILMLTARGEEEERVRGFEEGADDYVTKPFSPRELVARVRALLRRSG 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + + R   G + +    R+  + G    L + E  +L  L  + G   ++ ++   ++G 
Sbjct: 120 IHD-RLVYGDLEIVPGSREVYLAGRPVELSKLEFDLLLTLAQHPGMVFSRERLLERVWG- 177

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            D    E VV+ H++ LRK+L ++      +++ R +GY  
Sbjct: 178 SDFFGVERVVDVHVASLRKRLGDEPDRPRFIETVRGVGYRF 218


>gi|26987921|ref|NP_743346.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24982631|gb|AAN66810.1|AE016310_2 transcriptional regulatory protein PhoP [Pseudomonas putida KT2440]
          Length = 225

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  +E     E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGLP--GISGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL   +R+  +  P++ ++   + Q  ++   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQALALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL  + GF P+D+ R LGY
Sbjct: 180 PGDEERDPNVIEVLVGRLRRKLEGERGFKPIDTVRGLGY 218


>gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|73541504|ref|YP_296024.1| two component heavy metal response transcriptional regulator
           [Ralstonia eutropha JMP134]
 gi|72118917|gb|AAZ61180.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia eutropha JMP134]
          Length = 224

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       +    ++   +        +    D+  ++  L   G    
Sbjct: 3   ILVVEDEPKTGEYLRKGLTESSFVVDVAVTGGDGLHQATEHEYDLIILDVMLP--GMSGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++    ++  +   + G DD + KP    E+LARV  + RR  V
Sbjct: 61  DVLRQLRERKDTPVLFLTARDEVEDRVRGLELGGDDYLAKPFAFVELLARVRTLLRRGPV 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +R E G + +          G+   L  RE  +L +L    G+ +++T I S ++ +
Sbjct: 121 READRIEIGDLEIDVIRHRVTRAGQRIDLTPREFALLHFLARRHGEVLSRTHIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR K+ +      + S R +GY ++
Sbjct: 181 -NFDSDTNVVDVAIRRLRAKMDDHFAPKLIHSVRGIGYVLE 220


>gi|75909659|ref|YP_323955.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703384|gb|ABA23060.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 224

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D A + +   A   + G  ++  ++ +           D   ++  +   G+  L 
Sbjct: 4   LFVEDEAKIANFVQAGLKEQGFVVDYCDNGDEGYLRALDNEYDAIILDIMVP--GKDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           + + +R      P+I ++    L   L   + G DD + KP    E++AR+ A+ RR   
Sbjct: 62  ILKQLRQKGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELVARIHAVVRRSIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N    G +++    R+      V  L  RE  +LEYLM + G+   +TQI   ++G 
Sbjct: 122 DRQNLLVIGTLKLDRITREVTCNQRVIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     NVV+  I ++RKK+        ++S R +GY  
Sbjct: 181 YDFNPNTNVVDVCIQRIRKKIDPVDEAGWIESIRGVGYRF 220


>gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060175|ref|YP_003138063.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 243

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L +  + D   +   ++       
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDV--VTAADGEEALDTFHKADPDLVVLDVMMPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGVPGIPSSGVLQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|85708091|ref|ZP_01039157.1| two-component response regulator [Erythrobacter sp. NAP1]
 gi|85689625|gb|EAQ29628.1| two-component response regulator [Erythrobacter sp. NAP1]
          Length = 225

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G +++     E   +L S+   D   ++  L       L
Sbjct: 3   ILIVEDEPTLGQQLKSTLEQTGYAVDLSTDGEDGHFLGSTEDYDACILDLGLPE--IDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  + R      P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SVLGMWRKEGRDFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +      + GE   L  +E ++L YLM ++GK V++T++   IY 
Sbjct: 121 GNTSSELTAGGVRLDTRSGRVTLDGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G + + + R LGYS+D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GAEVITTIRGLGYSLD 217


>gi|313114104|ref|ZP_07799656.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623513|gb|EFQ06916.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 229

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D A +++         G  +  F S E       +A  ++  ++  L   GE  
Sbjct: 1   MIYIVEDDAAIRELEQYALQSSGYEVTSFESSESFWQAMHAAEPELVILDVMLP--GEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             + + +R      ++P+I ++   S   T+   D G DD ++KP    E L+RV A  R
Sbjct: 59  FSILKKLRNTPSLRRLPIIMVTAKSSELDTVRGLDCGADDYISKPFGIMEFLSRVRAALR 118

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   +   N      I + +   +  V G    L  +E  +L  L+ N    V +  I  
Sbjct: 119 RSAPEARPNVLSFHEILLDNARHNVTVSGTPVELTYKEYSLLRLLLENTNLVVTRETILQ 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D +VE   V+ HI  LRKKL +      + + R +GY +
Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAG--KYICTVRKVGYKL 220


>gi|304404343|ref|ZP_07386005.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304347321|gb|EFM13153.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G   +     +         + D+  ++  L        
Sbjct: 4   ILIIEDERTIAELQRDYLESHGYKADIEGRGDTGLRRALDGQYDLIILDLMLPNT--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  + +P+I IS        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICRRIRQEADIPIIMISAKKEEIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +        + +    R   ++ +   L  +E  +L  L  +  +   K ++F
Sbjct: 122 LTGDSREARESLTIRGLTINKLTRQVNIRDQDMLLTSKEFDLLLLLATHPNRVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++GL +   E + V  HI +LR+K+  +      +D+   +GY +
Sbjct: 182 ERVWGL-ESVGESSTVTVHIRRLREKIELDPSNPQYIDTVWGVGYRL 227


>gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 232

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAIHVIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|229135700|ref|ZP_04264477.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228647798|gb|EEL03856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 232

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAMHIIQTQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRGKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  S +  E G + +  + R   V  E   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKVAESKSALEIGGVVIDPERRTVNVYDEKIELTPKEFDILYLLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWAEGYYESG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|254423455|ref|ZP_05037173.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190944|gb|EDX85908.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 226

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G + E   + +        A  D+  ++  L  K    L
Sbjct: 4   ILITEDEPRIASFIKKGLNAHGFTTEVAITAQQAIAQTLEASFDLLILDLGLPDK--DGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R   + +P+I ++    +   +   + G DD V KP    E+LARV    R+  
Sbjct: 62  QVIEELRGQGATLPIIILTARDDIHDKVTGLEGGADDYVTKPFRFEELLARVRVRLRQAP 121

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + + A           + +    R  +V GE+  LP RE  + E    + G+ +++ Q+
Sbjct: 122 AAGSAATGNDQMLWASNVSLDLLTRRVQVSGEIVDLPAREFTLAETFFRHPGQVLSREQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D +   N+V+ ++  LRKKL    G D +++ R +GY +
Sbjct: 182 LDRVWG-YDYSPGSNIVDVYVGYLRKKL----GADLIETVRGIGYRL 223


>gi|39995559|ref|NP_951510.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39982322|gb|AAR33783.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298504564|gb|ADI83287.1| winged-helix transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 224

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 94/220 (42%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V         ++   ++   + E    +      D+  ++  L  K    L 
Sbjct: 4   LVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKGYDLIVLDVMLPKK--DGLS 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R      P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR + 
Sbjct: 62  VVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSEQ 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     +R+         + +   L  +E  +LEY M N  + + +T I   ++  
Sbjct: 122 DRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      N+++ +++ LRKK+  +     + + R +GY +
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDRESDKKLIHTVRGVGYIL 220


>gi|50086511|ref|YP_048021.1| positive response regulator for the pho regulon,autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
 gi|49532487|emb|CAG70199.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
          Length = 236

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  L G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMLPG-GVSGV 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               N     +   + +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALNGDKVIDANGLILDPVSQRVSFGSNILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWGG-NVYIEDRTIDVHIRRLRKVLEPFGADRFVQTVRGTGYRF 227


>gi|302523119|ref|ZP_07275461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318057260|ref|ZP_07975983.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318076712|ref|ZP_07984044.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302432014|gb|EFL03830.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 247

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++       G  G ++   +      +   S R D+  ++  L         
Sbjct: 14  LVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDT--DGFR 71

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +RA     P++ ++    ++  +    SG DD V KP H +E+L RV AI RR   
Sbjct: 72  LTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGA 131

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +            + +     +    G    L   E R+L   +A+  + + K +I  
Sbjct: 132 PASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQ 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D + +  +V++++  LR+KL +      + + R +GY +
Sbjct: 192 RVW-RYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCL 235


>gi|116490221|ref|YP_809765.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|290889603|ref|ZP_06552693.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
 gi|116090946|gb|ABJ56100.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|290480801|gb|EFD89435.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
          Length = 237

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 98/231 (42%), Gaps = 19/231 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEK 59
            +++DD   + D        +G  +    + +  E L+  +S   D+  ++  L     +
Sbjct: 4   ILVVDDEKPISDVIKFNLQKEGYDV--VTAFDGREALEVFASENPDLVLLDQMLPE--IE 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E+ R IR++S  P+I ++   S    +   + G DD V KP  +RE++ARV A  RR 
Sbjct: 60  GTEVLRQIRSNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQ 119

Query: 120 KV-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                        S    +   + +  D       G    L  RE  +L YL    G+ +
Sbjct: 120 DATLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVL 179

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
            +  + + ++G FD   +   V+  + +LR+K+ +      +  +KR +GY
Sbjct: 180 TREALLTEVWG-FDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGY 229


>gi|293410323|ref|ZP_06653899.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
 gi|291470791|gb|EFF13275.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
          Length = 260

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 40  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+        + + R +GYS 
Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDEPFPEKLIATIRGMGYSF 255


>gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 9/224 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D   + +        +   ++   +L+ +E L+         I   L+  G   
Sbjct: 2   VVLLVEDDEDLGELLKYNLEKNQFKVDW--TLDGKEALEKIKTNSYDLIILDLMLPGASG 59

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L++ + IR +S    VP+I ++      T +  F  G DD V KP   +E+LAR+ A+ R
Sbjct: 60  LDICKEIRENSINKDVPVIVLTALSDEDTKVKGFSIGADDYVTKPFSMKELLARIEAVLR 119

Query: 118 RLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   V     E   I      +   V G    L + E ++LE+ + +  +  ++ ++   
Sbjct: 120 RAGYVRKAILEFDGIVYDKRSKSVTVDGNSIYLTKTEFQLLEFFLEHPEQLFSREELLEK 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G  D       V+ +IS+LRKKL +K     + +   LGY +
Sbjct: 180 IWG-HDHNETTRTVDVYISRLRKKLGDKG--KYLKTLPRLGYKL 220


>gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
 gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
          Length = 243

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +         D+G  +   +  +    L+   +    A+   L+  G   L
Sbjct: 10  IFLVEDDNDIASLLQLSLKDEGYEI--IHEADGTRALEQLEKHVWDAVILDLMLPGVDGL 67

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R IR  S  +P+I IS   S    +   + G DD + KP    E++ARV A++RR  
Sbjct: 68  EICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQE 127

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L++         + +    R+    G+   L  RE  +L +   + G+  ++  +
Sbjct: 128 AMSQNLRMEAGIVSVHGVEIDPLAREVRQHGKSIDLTPREFDLLYFFARHPGEVFSRQAL 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V SHI++LR K+  +    + + +    GY +
Sbjct: 188 LDQVWG-YQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKL 234


>gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 232

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 240

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +   +  E    L      D+  ++  L        
Sbjct: 13  LLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAEEYHPDLVVLDVMLPDV--DGF 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R    +  ++ ++    ++  +     G DD V KP    E++AR+ A+ RR  
Sbjct: 71  EVTRRLRERGREQAVLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVLRRTG 130

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   +       + +  D  +    G V  L   E ++L YL+ N  + V+K QI   +
Sbjct: 131 STVDESATLRFHDLELNEDSHEVRRAGRVVELSPTEFKLLRYLLLNPNRVVSKLQILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+K+ +  G   + +KR +GY +
Sbjct: 191 WD-YDFRGESGIVESYISYLRRKI-DADGPPLIHTKRGVGYVL 231


>gi|315655078|ref|ZP_07907980.1| phosphate regulon response regulator [Mobiluncus curtisii ATCC
           51333]
 gi|315490559|gb|EFU80182.1| phosphate regulon response regulator [Mobiluncus curtisii ATCC
           51333]
          Length = 227

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G +  GF   +           ++  ++  L   G   
Sbjct: 1   MIYFVEDDLNIRDLVVYTLGSTGFTARGFADYQEFREAMMELLPEMILLDIMLP--GVDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R IRA+ +   +P+I ++   +    +   D G DD + KP    E+++R+ A+ R
Sbjct: 59  IQILRRIRANPETEGIPVIMVTAKGAEFDKVKSLDLGADDYITKPFGMMELVSRIRAVLR 118

Query: 118 RLKV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R+                G I +        V+G    L  +E ++LE LM+  G   ++
Sbjct: 119 RVARLTDPTAEDEEILTIGTIDLNLPRHTVAVEGREVKLTLKEYQLLEELMSQPGILFSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +I+G +        V+ HI  LRKKL        +++ R +GY I
Sbjct: 179 DKLLDSIWG-YSFHGGTRTVDVHIRTLRKKLGPA--AKHIETVRGVGYKI 225


>gi|154499728|ref|ZP_02037766.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
           29799]
 gi|150271326|gb|EDM98583.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 103/225 (45%), Gaps = 14/225 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEK 59
            ++I+D   +++   A   D G ++  F + +  E +        D+  ++  L      
Sbjct: 5   ILVIEDEESIRNIIRAFLEDAGYTV--FVAGDGLEGVNKFHEKNPDLVLLDLMLP--KMN 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              +  I+R  S+ P+I ++      + L  FD+  DD + KP     ++  + A+ RR+
Sbjct: 61  GFTVCEILRKESRTPIIMLTALDDDDSQLKGFDALADDYITKPFSMPVVMKHIEAVLRRI 120

Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + + +           + +D    +V G    L  RE  IL++L+ N+G+   +  +   
Sbjct: 121 EPAASEPSVIRYKAHVLDADSFSVQVNGVPVSLTTREFEILKFLLENQGRVFTRDNLLDR 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+  +D   +E ++ +HI  +RKKL    G D +++ R +GY I+
Sbjct: 181 IWD-YDYVGDEKIINTHIKNIRKKL----GVDYIETIRGVGYKIE 220


>gi|226949656|ref|YP_002804747.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844282|gb|ACO86948.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 235

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G  + + F+ LE  E  Q    ED   +   ++      
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQG---EDYHMVIMDVMMPVMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R IR  S+VP+I +S        +     G DD + KP    E++ARV    RR  
Sbjct: 63  IEAMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAI 122

Query: 121 VSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N           E G ++   +       G+   L  +E +IL+    N  +   K Q
Sbjct: 123 YYNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I+ +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 183 IYDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|157273493|gb|ABV27392.1| transcriptional regulatory protein [Candidatus Chloracidobacterium
           thermophilum]
          Length = 242

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 96/224 (42%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            V+I+D   +          +G   +    + E           ++  ++  L       
Sbjct: 5   IVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPL--MNG 62

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ R +R   A + VP+I ++        +     G DD + KP   RE++AR+ A+ R
Sbjct: 63  FEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAVLR 122

Query: 118 RLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R + + ++  + G + +  +      QG+   L R+E  +L+ L  ++G+ + +  +   
Sbjct: 123 RTEGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLLDR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G+ D   E   ++ HI ++R+KL        +++   +GY  
Sbjct: 183 VWGI-DYDGETRTLDVHIRRVRQKLGIDG---YIETAVGIGYRF 222


>gi|33416267|ref|NP_878013.1| vancomycin response regulator VanR [Staphylococcus aureus]
 gi|121633842|ref|YP_976080.1| VanR protein [Enterococcus faecium]
 gi|124112009|ref|YP_001019038.1| VanR protein [Enterococcus faecium]
 gi|190606514|ref|YP_001974799.1| VanR protein [Enterococcus faecium]
 gi|197103114|ref|YP_002128396.1| VanR protein [Enterococcus faecium]
 gi|256965580|ref|ZP_05569751.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
 gi|257880769|ref|ZP_05660422.1| transcription regulator [Enterococcus faecium 1,230,933]
 gi|257883393|ref|ZP_05663046.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
 gi|257891275|ref|ZP_05670928.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
 gi|293384653|ref|ZP_06630512.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|293387045|ref|ZP_06631612.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|293567296|ref|ZP_06678649.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
 gi|294617747|ref|ZP_06697365.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|305678704|ref|YP_003864123.1| VanR [Enterococcus faecalis]
 gi|312907837|ref|ZP_07766825.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|312979123|ref|ZP_07790833.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|313247850|ref|YP_004033012.1| two component regulator protein [Enterococcus faecalis]
 gi|314944050|ref|ZP_07850716.1| regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|314949575|ref|ZP_07852901.1| regulatory protein VanR [Enterococcus faecium TX0082]
 gi|314995084|ref|ZP_07860203.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|320152796|ref|YP_004172619.1| VanR [Enterococcus faecium]
 gi|586203|sp|Q06239|VANR_ENTFC RecName: Full=Regulatory protein vanR
 gi|21886739|gb|AAM77882.1|AF516335_2 cytoplasmic regulator [Enterococcus faecium]
 gi|148327|gb|AAA24787.1| vancomycin response regulator [Enterococcus faecium]
 gi|148332|gb|AAA24790.1| vanR [Enterococcus faecium]
 gi|155039|gb|AAA65953.1| vanR [Enterococcus faecium]
 gi|33390951|gb|AAQ17157.1| vancomycin response regulator VanR [Staphylococcus aureus]
 gi|60391955|gb|AAX19281.1| transcriptional response regulator [Paenibacillus thiaminolyticus]
 gi|110556107|dbj|BAE98126.1| vanR [Enterococcus faecalis]
 gi|121490901|emb|CAL36537.1| VanR protein [Enterococcus faecium]
 gi|124012111|emb|CAL90943.1| VanR protein [Enterococcus faecium]
 gi|186886502|gb|ACC93630.1| VanR [Enterococcus faecium]
 gi|190350284|emb|CAP62634.1| VanR protein [Enterococcus faecium]
 gi|196158936|emb|CAP70011.1| VanR protein [Enterococcus faecium]
 gi|227069719|gb|ACP19233.1| response regulator VanR [Enterococcus faecium]
 gi|256956076|gb|EEU72708.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
 gi|257814997|gb|EEV43755.1| transcription regulator [Enterococcus faecium 1,230,933]
 gi|257819051|gb|EEV46379.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
 gi|257827635|gb|EEV54261.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
 gi|281335163|gb|ADA62247.1| vancomycin response regulator [Enterococcus faecium]
 gi|283481157|emb|CAZ67068.1| VanR protein [Enterococcus faecium]
 gi|291078047|gb|EFE15411.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|291083530|gb|EFE20493.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|291590004|gb|EFF21799.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
 gi|291595993|gb|EFF27268.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|304324955|gb|ADM24835.1| VanR [Enterococcus faecalis]
 gi|304324997|gb|ADM24876.1| VanR [Enterococcus faecalis]
 gi|304325039|gb|ADM24917.1| VanR [Enterococcus faecalis]
 gi|310626169|gb|EFQ09452.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|311288087|gb|EFQ66643.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|312837017|dbj|BAJ34903.1| two component regulator protein [Enterococcus faecalis]
 gi|313590687|gb|EFR69532.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|313597355|gb|EFR76200.1| regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|313644055|gb|EFS08635.1| regulatory protein VanR [Enterococcus faecium TX0082]
 gi|319739748|gb|ADV60066.1| VanR [Enterococcus faecium]
 gi|383762|prf||1904198A vanR gene
          Length = 231

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  + + +        +  D++ ++  L   G   L
Sbjct: 5   ILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLP--GTSGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K 
Sbjct: 63  TICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + N      + +  +  +  +  +   L   E  IL  L  N+G  V+   +F
Sbjct: 123 FSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+G    +   N +  HI  LR+K+ + +     + +   +GY I+
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIE 230


>gi|253578241|ref|ZP_04855513.1| regulatory protein VanR [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850559|gb|EES78517.1| regulatory protein VanR [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 18/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++++D A +++G   L   +G  ++     E E+  Q   +  +D+  +   ++  G  
Sbjct: 7   ILVVEDDAAIREGVRILLEGEGYIVQ-----EAEDGYQCLKKVSDDIDLVILDIMMPGIS 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            ++    IR  S VP++ ++        L    +G DD + KP  + E+LARV A+ RR 
Sbjct: 62  GIKTCEEIRKISHVPVLFLTAKSQESDKLLGLMAGGDDYLVKPFSYAELLARVKALLRRY 121

Query: 120 KVSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            V +             E G ++V +   +     +   L   E RIL  +M N  K  +
Sbjct: 122 HVYSQTLQGEKTKEHWIEYGKVKVNTQCNEVFRNEKEISLREMEYRILLLMMENPKKVFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++ +++         N V  HI +LR K+ +       + +    GY +
Sbjct: 182 VKNLYESLWEEPFLYSSGNTVMVHIRRLRMKIEDDPQKPKMIQTVWGKGYRL 233


>gi|326441388|ref|ZP_08216122.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 225

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLP--GRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|119493257|ref|ZP_01624097.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119452730|gb|EAW33908.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 229

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +               +  D+  ++  L       +
Sbjct: 10  ILLVEDEEALAQFLKQELTYEGYEVTVEQDGMNGLVKARESNPDLIILDWMLPR--LSGI 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +H+ VP+I ++    +   +   DSG +D + KP    E LARV    R L+
Sbjct: 68  EICRRLRTSHNHVPIILLTAKDEVSDRVTGLDSGANDYIIKPFSLEEFLARVRVHIRHLQ 127

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N +      + +    R+      +  L  +E  +LEYLM++  + + + QI   ++G
Sbjct: 128 EPNADLLTFYDLSLDRKTREVRRANRLIDLTAKEYDLLEYLMSHPRQVLTRNQILEQVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N++E ++  LR KL ++     + + R +GY +
Sbjct: 188 -YDFMGDSNIIEVYVRYLRIKLESEGESRLIQTVRSVGYVL 227


>gi|239904903|ref|YP_002951641.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239794766|dbj|BAH73755.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 227

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G + E   + +  E L  + R   +A+   L+  G    
Sbjct: 6   ILIVEDDEDIVELLAFNLQSAGFAAE--TARDGYEGLAKARRNPPAAVILDLMLPGLDGF 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + ++   +    P+I ++        +   + G DD V KP   RE++ R+ ++ +R
Sbjct: 64  EVCKELKRDPKTASAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRLRSVLKR 123

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +      + V        + G    L   E ++L  L  + G+ + + ++ +
Sbjct: 124 HAPEPEKRQVLARDGLSVDMAAHRVSLDGAEVALTATEFKLLAELFQSAGRVLTRDRLLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++G ++       V++H+ +LR+KL +    D +++ R +GY  
Sbjct: 184 SVWG-YEFEGYARTVDTHVRRLRQKLGHF--ADMIETVRGVGYRF 225


>gi|229029684|ref|ZP_04185759.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228731626|gb|EEL82533.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 218

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 99/219 (45%), Gaps = 4/219 (1%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   +++        +G   + + +++  + LQ      V  +   ++       ++  
Sbjct: 2   DDDPHIRELVSVFLEREGF--QTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFDVCF 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NN 124
            +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ + 
Sbjct: 60  ELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQ 119

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + G + +     +  V  +   LP +E  +L  L +  G+  ++ Q+   ++G +D  
Sbjct: 120 SIQVGDVLLNRKTFEVSVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFE 178

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 179 GNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVS 217


>gi|297200104|ref|ZP_06917501.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147578|gb|EFH28677.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLP--GRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|325263497|ref|ZP_08130231.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
 gi|324031206|gb|EGB92487.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
          Length = 226

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 111/227 (48%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD + ++         D ++ EG+  LE  + +++       +D++ +   ++   
Sbjct: 6   ILVVDDESRMRK-----LVKDFLTREGYLVLEAGDGMEAMDLFYEDKDIALVILDVMMPK 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               ++ R IR HS+VP+I ++     +  L  FD GVD+ ++KP   + ++ARV AI R
Sbjct: 61  MDGWQVCREIREHSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILR 120

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +   S +  + G I +       ++      L  +E  +L Y + N+G  +++ +I +
Sbjct: 121 RTQSTESGDVMDAGGIMIDRAAHIVKIGERTIDLSYKEFELLSYFVENQGIALSREKILN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++  +D   +   +++H+ KLR KL  K   D + +   +GY  + 
Sbjct: 181 NVWN-YDYFGDARTIDTHVKKLRSKLGEKG--DYIRTIWGMGYKFEV 224


>gi|318042529|ref|ZP_07974485.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 233

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 102/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +         ++G ++E  +  +            ++ ++  +        
Sbjct: 10  ILVADDDVNIAQLISMECEEEGFNVESVHDGQQALLQLRQKEFQLAILDWDMPL--MSGY 67

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R     +P++ ++    ++  +   D+G DD + KP + RE+LARV A+ RR  
Sbjct: 68  DVCQRLRDTGNTIPILMVTAKDEVEDRVKALDAGADDYLCKPFNIRELLARVRALVRRNS 127

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++N+    E G + +        V G+   L  RE  +L  LM    + +++ Q+ + +
Sbjct: 128 NTSNKKALLEYGALSINRPEHICSVNGKAIHLTVREFDLLSTLMEQPKQVISREQLITEV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D   +  VV+++I  LR KLR     + + + R +G+++
Sbjct: 188 WGE-DYFGDITVVDTYIKYLRVKLRTHGLGEMIQTVRGVGFTL 229


>gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 234

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + +        +G   E  +       L  +AR D+  ++  L       
Sbjct: 13  LVLVVEDEPEIAEILEGYLRREGFRTERASDGRQALNLVRAARPDLVLLDIMLPE--MDG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ R IR+    P+I ++        L   + G DD V KP   RE++ARV A+ RR  
Sbjct: 71  LEVLRRIRSSGHTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRVV 130

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +        GP+ + S+     + G    L   E R+LE L    GK  ++ ++  A 
Sbjct: 131 LAEAPKEVLRVGPLEIDSEKVVARLGGVRLELTPTEFRLLEALARTPGKAFSRAELLEAA 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             L D    E VV+ H+  LR+KL    G   +++ R +GY +
Sbjct: 191 --LPDSDALERVVDVHLKNLRRKLEAAGGAGLLETVRGVGYRL 231


>gi|256786375|ref|ZP_05524806.1| two-component systen response regulator [Streptomyces lividans
           TK24]
 gi|289770266|ref|ZP_06529644.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289700465|gb|EFD67894.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 248

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 99/233 (42%), Gaps = 21/233 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   V++        +G     +++G ++LE      ++ R D+  ++  +    
Sbjct: 17  ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKA----TAYRPDLVVLDIQMPR-- 70

Query: 58  EKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L   R IR      P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ 
Sbjct: 71  MDGLTAARRIRGAGDLTPIVMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALL 130

Query: 117 RRLKVS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR   +         ++      + +    R+    G    L R E  +LE  MA+  + 
Sbjct: 131 RRSSYAAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQV 190

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 LTREQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 242


>gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
 gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
          Length = 239

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G   E          L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEHFDFILLDIMLPQ--LDGIE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + IRA     P++ +S        +   + G DD + KP   RE++ARV AI RR + 
Sbjct: 64  VCKRIRAKGITTPIMMVSAKGDEFDKVLALELGADDYLTKPFSPRELIARVKAILRRTEK 123

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +S+ +     +RVF D  +     ++  L  +E  +L YL+ +    + + ++
Sbjct: 124 DQTDDNDLSDEQWVVNGLRVFPDRHEVYKDNDMLNLTPKEYELLLYLIKHPNMTLTRERL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 LERIWG-YDFGQETRLVDVHIGKLREKVEDDPKNPKFIKTIRGYGYKF 230


>gi|258507998|ref|YP_003170749.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257147925|emb|CAR86898.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|259649325|dbj|BAI41487.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 243

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +   +   N+ + EE L     A +    I   L      
Sbjct: 3   LLMIEDNTSVAEMMAMFFQKEKWEV--VNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMD 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++ + IR  S+ VPLI ++   +    +   + G DD V KP     ++AR+ A++RR
Sbjct: 61  GMQVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 120

Query: 119 LKVSNNR---------------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMA 162
            +V                    ET   ++ +  R+  + G+    L  +E  +L  L  
Sbjct: 121 AEVGAEAGAEQAAPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSK 180

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 181 SPKQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 237


>gi|27468859|ref|NP_765496.1| two component response regulator [Staphylococcus epidermidis ATCC
           12228]
 gi|81842588|sp|Q8CN92|HSSR_STAES RecName: Full=Heme response regulator hssR
 gi|27316407|gb|AAO05582.1|AE016750_187 two component response regulator [Staphylococcus epidermidis ATCC
           12228]
          Length = 224

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 6/226 (2%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +++DD   +     +    + +    F S E       +   D++ ++  +   G 
Sbjct: 1   MINCLIVDDDKKLLQYVSSHLERESIQTHTFTSGEASLDFLENKNVDIAIVDIMM--SGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              EL + ++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR
Sbjct: 59  DGFELCQTLKDDYHIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRR 118

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ ++N  + G + +     +  V  +   LP +E ++L  L +N      +  I   I
Sbjct: 119 YQINADNELQLGNLILNQSYMEITVGSKTMNLPNKEFQLLFLLASNPKHIFTRDDIIGKI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   ++  V+ HI +LR++L        + + R  GY +D N
Sbjct: 179 WG-FDYEGDDRTVDVHIKRLRQRLSKLKSSVSIQTVRGQGYRVDQN 223


>gi|300854363|ref|YP_003779347.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434478|gb|ADK14245.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 11/229 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   ++D       ++G  +    + +  E LQ S   +V  +   ++      
Sbjct: 5   IVLVVDDEKEIRDLVEIYLVNEGYKV--LKASDGLEALQISNDNEVDLVILDIMMPKMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+   +R    +P+I +S        +    +G DD V KP +  E++ARV +  RR  
Sbjct: 63  IEVCMRMRKSKNMPIIMLSAKSQDLDKILGLTTGADDYVVKPFNPLELVARVKSQLRRYK 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 KV     E   + + +     +V  +   L  RE  ILE L +NRG   +  +I
Sbjct: 123 RLNVPKKVDQEVIEVDDLMINTKNHQVKVGNKDVKLTPREFEILELLSSNRGVVFSIEKI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           + +++   D    +N V  HI K+R+K+         + +   +GY ++
Sbjct: 183 YESVWKQ-DFFESDNTVMVHIRKIREKIEENPRRPRFIKTIWGVGYKVE 230


>gi|294786787|ref|ZP_06752041.1| DNA-binding response regulator MtrA [Parascardovia denticolens
           F0305]
 gi|315226412|ref|ZP_07868200.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
 gi|294485620|gb|EFG33254.1| DNA-binding response regulator MtrA [Parascardovia denticolens
           F0305]
 gi|315120544|gb|EFT83676.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
          Length = 239

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S            L ++ R D+  ++  L       L
Sbjct: 14  ILVVEDEPTLATAIGQRLASEGWSTRIAGDGASAVQLAATYRPDLIIMDIMLPV--MDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + I     VP++ ++        +    +G DD + KP   RE++AR  A+ RR++ 
Sbjct: 72  EATKRIVTMRPVPILMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVER 131

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +             E   + +    R   ++GE   L   E  +L  L     + + + +
Sbjct: 132 AKVIAKNSENEKVLEFHGLTIDPAQRLVVLRGEEIHLTPTEFDLLATLARKPKQVLTREK 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D +     V+SH+  LR KL    G + + +   +GY+ +
Sbjct: 192 LLEEVWDWVDASG-TRTVDSHVKALRHKL----GSEMIRTVHGVGYAFE 235


>gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 244

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   +  +N  +    L ++    +  ++  +       
Sbjct: 18  ILVVDDDKEIVQLLEIYVRNEGYEPVSAYNGKDALTKLNTTPDIGLVILDLMMPE--MDG 75

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 76  MEVIKRIRKDSSIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRSE 135

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    GP+++  D  +   + G++  L   E  IL  L ++  +  +   IF
Sbjct: 136 GQMTNDQPDILNVGPLQINKDSHEVKTINGDLIQLTALEFGILYLLASHPNRVFSADDIF 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 196 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 242


>gi|254411111|ref|ZP_05024889.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182466|gb|EDX77452.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 224

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D    ++     E       +    +  ++  L       +
Sbjct: 3   ILLVEDDQRIAKALAETLQDQHYIVDMATDGEAGWDFVEAFSYKLILLDVMLP--KLDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R+ R+    P++ ++   +    +   D+G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  SFCQRLRRSGKMTPVLMLTAKDTSNDKVIGLDAGADDYVVKPFDLPELTARIRALLRRGN 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S     E   + +  +        +   L  +E  +LE L+ + G+  +++ I   ++ 
Sbjct: 121 SSLPPVLEWERLSLDPNTCQVTYAEQPLHLTPKEYGLLELLLRSHGRVQSRSAILEQLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             D   EE  V+ HI  LRKKLR      D + +   +GY +
Sbjct: 181 WDDPPGEE-AVKVHIKDLRKKLRAAGAPPDLIQTVYGIGYRL 221


>gi|158340539|ref|YP_001521533.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310780|gb|ABW32394.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 248

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++          G  +  + + +  E L     +    I   ++       
Sbjct: 15  ILVADDEVPIRRILGTRLSKIGYQV--YTAADGVEALDVFYDQCPDLIILDVMMPKLDGY 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + + +R  S+VP+I ++    ++  +   + G DD + KP   +E+ +RV  I RRL  
Sbjct: 73  GVCQAVRKTSRVPIIMLTALSEVKDRITGLEMGADDYMVKPFSPKELESRVRCILRRLSP 132

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       E G +++ +D R      E   L  +E  +L  L +  G+ V++ ++ 
Sbjct: 133 LKAFNHQMTGVIEIGSVQIDTDKRQVFRDHERVFLTYKEFNLLALLASRPGETVSRQELL 192

Query: 175 SAIYGLF-DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++    D  V+   V+ H+S+LR+KL+ KLG    + + R +G+++
Sbjct: 193 QKVWEYNKDSIVDTRTVDVHMSRLRQKLKEKLGETILIHTVRGVGFTL 240


>gi|325479624|gb|EGC82716.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 219

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  L++D   +++       + G  + GF+              D+  ++  L  K    
Sbjct: 1   MIYLVEDDKSIRNLVEYALREKGYEVCGFSDGSNIVDKVRDENVDLLILDIMLPEK--DG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR  S +P+I ++        +   D G DD + KP    E+++RV A+ RR K
Sbjct: 59  LSILKEIREFSNLPVIMLTARTDEFDKVTGLDLGADDYITKPFSILELISRVKAVLRRSK 118

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      I + +  R  +V  +   L  +E  +L  LM+N G  +++      I+G
Sbjct: 119 KKDKDDLTYKEISLNTSKRRVKVLDDKIDLTYKEFEMLLLLMSNVGNVISREDFLLKIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL+       + + R LGY +
Sbjct: 179 -YDYEGETRTVDVHIASLRSKLKETG--KYIHTVRNLGYKL 216


>gi|288960015|ref|YP_003450355.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288912323|dbj|BAI73811.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 219

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 9/219 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +++G    E   +L  +   D   ++  L       L 
Sbjct: 4   LVVEDTPELARQLTQRLAREGYAVDGAADGEEGRFLGETEPYDAVILDLGLP--KIDGLT 61

Query: 63  LPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R   RA   VP++ ++   +    +   D+G DD + KP    E+LARV A+ RR K 
Sbjct: 62  VLRGWRRAGISVPVLILTARGAWTEKVQGIDAGADDYLAKPFSMEELLARVRALIRRAKG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++     G + + +      V GE   L   E R+L YLM  +G+ V++T++   +Y  
Sbjct: 122 HASAEITCGGVVLDTRTGRVTVDGEPIELTAFEYRVLSYLMHRKGQVVSRTELTEHVYAQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            D   + N +E  + +LR+KL    G D + + R LGY 
Sbjct: 182 -DFDRDSNTIEVFVGRLRRKL----GVDVIKTVRGLGYR 215


>gi|229017879|ref|ZP_04174762.1| Sensor histidine kinase [Bacillus cereus AH1273]
 gi|229024084|ref|ZP_04180555.1| Sensor histidine kinase [Bacillus cereus AH1272]
 gi|228737180|gb|EEL87704.1| Sensor histidine kinase [Bacillus cereus AH1272]
 gi|228743470|gb|EEL93587.1| Sensor histidine kinase [Bacillus cereus AH1273]
          Length = 232

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 12/218 (5%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +       ++G ++  + + + +E LQ  +  +V  +   ++      LE+ + +R ++ 
Sbjct: 17  ELLAVYLRNEGYNI--YKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENNT 74

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--------N 124
           VP++ +S        +    +G DD + KP +  E++ARV A+ RR    N         
Sbjct: 75  VPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNAATPKNEDG 134

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 + +       +V GE   L   E  IL  L +N G+  +  +IF  ++   D  
Sbjct: 135 IIRIRTVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNE-DGY 193

Query: 185 VEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
                V  HIS LR KL   + G   + +   +GY I+
Sbjct: 194 GSNKTVMVHISNLRDKLETVMNGEKLIHTVWGVGYKIE 231


>gi|205352249|ref|YP_002226050.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272030|emb|CAR36874.1| response regulator [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326627294|gb|EGE33637.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 248

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRRGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 83  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|118587242|ref|ZP_01544670.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|118432384|gb|EAV39122.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
          Length = 244

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 98/231 (42%), Gaps = 19/231 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEK 59
            +++DD   + D        +G  +    + +  E L+  +S   D+  ++  L     +
Sbjct: 11  ILVVDDEKPISDVIKFNLQKEGYDV--VTAFDGREALEVFASENPDLVLLDQMLPE--IE 66

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E+ R IR++S  P+I ++   S    +   + G DD V KP  +RE++ARV A  RR 
Sbjct: 67  GTEVLRQIRSNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQ 126

Query: 120 KV-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                        S    +   + +  D       G    L  RE  +L YL    G+ +
Sbjct: 127 DATLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVL 186

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
            +  + + ++G FD   +   V+  + +LR+K+ +      +  +KR +GY
Sbjct: 187 TREALLTEVWG-FDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGY 236


>gi|163940332|ref|YP_001645216.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229011818|ref|ZP_04168999.1| Sensor histidine kinase [Bacillus mycoides DSM 2048]
 gi|229170277|ref|ZP_04297956.1| Sensor histidine kinase [Bacillus cereus AH621]
 gi|163862529|gb|ABY43588.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228613200|gb|EEK70346.1| Sensor histidine kinase [Bacillus cereus AH621]
 gi|228749449|gb|EEL99293.1| Sensor histidine kinase [Bacillus mycoides DSM 2048]
          Length = 231

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 12/218 (5%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +       ++G ++  + + + +E LQ     +V  +   ++      LE+ + +R ++ 
Sbjct: 16  ELLAVYLRNEGYNI--YKAYDGDEALQMICTYEVDLMLLDIMMPKRNGLEVCQEVRENNT 73

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----- 127
           VP++ +S        +    +G DD + KP +  E++ARV A+ RR    N  ++     
Sbjct: 74  VPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDG 133

Query: 128 ---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 + +       +V GE   L   E  IL  L +N G+  +  +IF  ++   D  
Sbjct: 134 IIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNE-DGY 192

Query: 185 VEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
                V  HIS LR KL   + G   + +   +GY I+
Sbjct: 193 GSNKTVMVHISNLRDKLETVMNGEKLIHTVWGVGYKIE 230


>gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
 gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
          Length = 235

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D  ++ D        +  S++  F+  E  +++  SA  DV  ++  L       
Sbjct: 10  ILIVEDERMINDIIARTLRKENYSVDSCFDGQEALDYIF-SAEYDVLILDIMLP--KLDG 66

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ + IR    Q P++ ++   S+Q  +   D G DD + KP    E+LAR+  I R+ 
Sbjct: 67  FEVLKRIRNKGIQTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVILRKN 126

Query: 120 KVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + +    N  +   + V  +        +   L  +E  ILEY++ N+ + ++K +I  
Sbjct: 127 SIKSDSVGNIFKIANLTVDCNEHTVFRDEKRIKLSPKEFSILEYMIRNKKRVISKDKIEQ 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
            IY  FD  +  NV+E HI  LRKK+        + + R +GY + + N
Sbjct: 187 HIYD-FDSEINSNVIEVHIRLLRKKIDTDFTPKLIHTIRGVGYVLKEEN 234


>gi|300785061|ref|YP_003765352.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794575|gb|ADJ44950.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 230

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V++   A     G  +    +        ++   D+  ++  L        
Sbjct: 5   LLVVDDEATVRELLSAALRFAGFRVTSAATAREAVAAATAEPPDLVLLDVMLPD--MDGF 62

Query: 62  ELPRIIRAHSQ-----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E+ R +R         VP++ ++        +     G DD V KP    E++AR+ AI 
Sbjct: 63  EVVRRLRERHPGHGAPVPVLFLTARDRQSDKVTGLSLGADDYVTKPFDLAELIARIRAIL 122

Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR           GP+ + ++G      G+   L   E R+L YLM N G+ V+K QI  
Sbjct: 123 RRTAGRPAGVLTAGPLALDAEGHQVTRAGQAIRLSATEFRLLRYLMENAGRVVSKGQILD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   D   +  +V+++IS LR+K+        + +   +GY +
Sbjct: 183 RVW-RDDFGGDAGIVDTYISYLRRKVDTA-EPKLIHTVHGVGYVL 225


>gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 242

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L++  + D   +   ++       
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDV--VTAGDGEEALETFRKSDPDLVVLDVMMPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|308175054|ref|YP_003921759.1| transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607918|emb|CBI44289.1| Transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens DSM 7]
 gi|328555023|gb|AEB25515.1| Transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens TA208]
 gi|328913378|gb|AEB64974.1| Transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens LL3]
          Length = 239

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G       +   EE ++    E    +   ++ +G    
Sbjct: 6   ILIVDDEKAIVDMVKRVLVKEGY-HNIKTAGSAEEAIEFVKHETADLLVLDVMMEGMSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR ++  P+  ++   S    L  F  G DD + KP +  E+ AR+ A  +R   
Sbjct: 65  EACTEIRNYTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLKRTYK 124

Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +                  +  V GE      +  ++L+Y   +    ++K QI+  
Sbjct: 125 REEKTAVKTYSYSHFSYSPQNAELIVGGEPVSCSAQLLQLLQYFCEHPDVVLSKDQIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G +    + N V  HI KLR+K+  +      + + R LGY  
Sbjct: 185 VWG-YPSYGDNNTVMVHIRKLREKIEKDPSDPSYIVTVRGLGYRF 228


>gi|294631359|ref|ZP_06709919.1| transcriptional regulatory protein CseB [Streptomyces sp. e14]
 gi|292834692|gb|EFF93041.1| transcriptional regulatory protein CseB [Streptomyces sp. e14]
          Length = 245

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDQTILDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|238762221|ref|ZP_04623193.1| Two-component response regulator of virulence determinant [Yersinia
           kristensenii ATCC 33638]
 gi|238699568|gb|EEP92313.1| Two-component response regulator of virulence determinant [Yersinia
           kristensenii ATCC 33638]
          Length = 223

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLP--GEDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKK++ K   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKMQAKHEGEVITTIRGQGYRFDAN 223


>gi|257062967|ref|YP_003142639.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790620|gb|ACV21290.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 231

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D         G  ++   + +    +      D+  ++  +   G    
Sbjct: 8   ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMP--GMNGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R +R  +  P++ +S   S    +   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 66  ELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQM 125

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++      G I +       E       L  RE  +L  LM   GK  ++  +   
Sbjct: 126 DAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLRE 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            +G ++   E   V++HI +LR KL    GFDP  +++ R  GY  
Sbjct: 186 AWG-WEYITETKTVDTHIKRLRDKL-AAAGFDPGIIETVRGYGYRF 229


>gi|304389765|ref|ZP_07371724.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326941|gb|EFL94180.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 227

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G +  GF          +    ++  ++  L   G   
Sbjct: 1   MIYFVEDDLNIRDLVVYTLGSTGFTARGFADYREFREAMTELLPEMILLDIMLP--GVDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R IRA+     +P+I ++   +    +   D G DD + KP    E+++RV A+ R
Sbjct: 59  IQILRRIRANPETEDIPVIMVTAKGAEFDKVKSLDLGADDYITKPFGMMELVSRVRAVLR 118

Query: 118 RLKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R+                G I +        V G    L  +E ++LE LM+  G   ++
Sbjct: 119 RVARPADSTVGDEEILTIGSIDLNLPRHTVAVAGREVKLTLKEYQLLEELMSQPGILFSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +I+G +        V+ HI  LRKKL        +++ R +GY I
Sbjct: 179 NRLLDSIWG-YSFHGGTRTVDVHIRTLRKKLGPA--AKHIETVRGVGYKI 225


>gi|302387499|ref|YP_003823321.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198127|gb|ADL05698.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 230

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D       ++   +    S +    L  +   D++ I+  L        
Sbjct: 5   ILIIDDEKEITDLIEVFLQNENFQVFKCYSSQDALMLIKNESFDLAIIDVMLPD--GNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL ++IR     P+I ++        +     G DD V KP    E++ARV A  RR++ 
Sbjct: 63  ELCKLIREKYTYPIIMLTSKTEGIDRVTGLSLGADDYVTKPFLPLELVARVKAQLRRVQH 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++       + +     +  + G+   L   E  IL  L  NRGK  +  ++F
Sbjct: 123 YDGKENNTSETLMVMGLFLNKTSHECNLNGKTIKLTPTEFSILWLLCKNRGKVFSADELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+G        N V   I  +R+KL +       V +   +GY I+
Sbjct: 183 QQIWGEKYFKNSRNTVMVQIRHIREKLYDTGNKPKFVKTVWGVGYIIE 230


>gi|168183301|ref|ZP_02617965.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237793939|ref|YP_002861491.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673496|gb|EDT85457.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261920|gb|ACQ52953.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++  F +   +E L+   RE+V+ +   ++      L
Sbjct: 5   ILVVDDEKEIRDLLEINLTNEGYNV--FKARYGKEALEILEREEVNLMVLDIMMPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ +  R    +P++ +S        ++   +G DD V KP +H E+  R+ A+ RR   
Sbjct: 63  EVCKRARQKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYF 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++S+N      + +        +      L  RE  IL  L  NRG   +  +IF
Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++         N V  H+S+LR K+   + G   + +   +GY I+
Sbjct: 183 EKVWKER-YYQSNNTVMVHMSRLRDKIEQYMEGSKVIHTVWGVGYKIE 229


>gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 228

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPN--LDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD + KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|298346496|ref|YP_003719183.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|298236557|gb|ADI67689.1| response regulator [Mobiluncus curtisii ATCC 43063]
          Length = 227

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +   G  G +  GF          +    ++  ++  L   G   
Sbjct: 1   MIYFVEDDLNIRDLVVYTLGSTGFTARGFADYREFREAMTELLPEMILLDIMLP--GVDG 58

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +++ R IRA+ +    P+I ++   +    +   D G DD + KP    E+++RV A+ R
Sbjct: 59  IQILRRIRANPETEGIPVIMVTAKGAEFDKVKSLDLGADDYITKPFGMMELVSRVRAVLR 118

Query: 118 RLKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R+                G I +        V G    L  +E ++LE LM+  G   ++
Sbjct: 119 RVARPADSTVGDEEILTIGSIDLNLPRHTVAVAGREVKLTLKEYQLLEELMSQPGILFSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +I+G +        V+ HI  LRKKL        +++ R +GY I
Sbjct: 179 NRLLDSIWG-YSFHGGTRTVDVHIRTLRKKLGPA--AKHIETVRGVGYKI 225


>gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 225

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +      E         R DV  ++  L   G   +
Sbjct: 7   ILVVEDDPSIARLLQLELEHRGYEVCCAADGEEGLAAFERLRPDVVVLDIMLP--GMDGV 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A  + P+I ++   +    +   D G DD + KP    E+LAR+ A+ RR++
Sbjct: 65  GVLRRLREAGHRTPVIMLTARDATGDKVHSLDRGADDYLTKPFEVEELLARMRAVLRRVE 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + V +  R+    G    L  RE  +LE L  N  + +++ +I   ++G 
Sbjct: 125 -GEEVLRVGSLTVDTSAREVRRGGRAVALTAREYDLLELLARNGRRVLSREKILDRVWGE 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               V+ NVV+ ++  LR+KL        + + R +GY +
Sbjct: 184 G-AGVDPNVVDVYVGYLRRKLEGPGEGRLIHTVRGVGYVL 222


>gi|269794287|ref|YP_003313742.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096472|gb|ACZ20908.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 244

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 17/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +        G +G   E            +    D   ++  L   G   L
Sbjct: 17  ILIVEDEPAIATAIAQRLGAEGWRTEVARDGLSGVEAAARMLPDAVVLDVMLP--GIDGL 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R I+A   VP++ ++        L     G DD + KP   RE++AR+ A+ RR+  
Sbjct: 75  EVCRRIQAERPVPILMLTARDDETDMLIGLGVGADDYMTKPFSMRELVARLKALLRRVDR 134

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +   +            G + +    R      +   L   E  +L  L ++      + 
Sbjct: 135 AAQASSAPDGAEPPMVIGDVVIDRAQRRVHRAEQEIHLTPTEFELLVMLASSPKTVQTRE 194

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + ++   D +     V+SHI  LR+KL    G D + +   +GY+ +
Sbjct: 195 RLLAEVWDWADASG-TRTVDSHIKALRRKL----GADLIRTVHGVGYAFE 239


>gi|255102347|ref|ZP_05331324.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308246|ref|ZP_05352417.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 223

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G +    +       +  S   D+  ++  +        
Sbjct: 4   ILIVEDEKRMQSIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPY--LDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R+ R  + +P+I ++     +  L  ++ G DD + KP   + +LA+V A+ RR   
Sbjct: 62  SVCRVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  N    G I +    R   V+ ++  L  +E  +L   M N  +  ++ ++ + I+G
Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D       V++HI  LRKKL ++     + +    GY  + 
Sbjct: 182 -YDFEGNTRTVDTHIKTLRKKLGSEGHH--IVTLIRSGYKFEV 221


>gi|150017114|ref|YP_001309368.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903579|gb|ABR34412.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 227

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++   ++      L +    D+  ++  +       +
Sbjct: 5   ILVVDDDKSIRNLIKVYLENEGYNIMEASNGAEALILINENNFDLIILDVMMPV--LDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
                IR    +P+I +S        ++    G DD + KP    E++ARV A  RR K 
Sbjct: 63  SACLKIREDYTMPIIFLSAKDEEIHKIEGLTVGADDYITKPFGSMELIARVKAQLRRYKK 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +++      + +  D  +  V+G+   L  +E  ILE L  NRG   +  +++ 
Sbjct: 123 FNVEPQNSSSITIEELTINFDTHEVTVRGDKIKLTPKEFDILECLAKNRGVVFSVQKLYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+     AV +  +  HI+ LR+K+  +      + +   +GY I
Sbjct: 183 TIWNE-QFAVSDTSIVVHITNLRQKIEIDPKSPKYIKTVWGVGYKI 227


>gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 239

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  +E            ++   D+  ++  L   G    +
Sbjct: 2   LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKAANHEYDLILLDVMLP--GMNGFQ 59

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R +    P+I ++   + +  +     G DD + KP    E+LARV+A+ RR+  
Sbjct: 60  ILEKLRGSGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 119

Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       N    G + ++ +  +  + G+   L  +E  +L YL    G  + + 
Sbjct: 120 HVEEVKTPDQQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + + ++G FD    +  V+ H+S LRKKL        +DS R +GY +  N
Sbjct: 180 DLMNVVWG-FDYIGGQRTVDVHVSSLRKKLELDPESVHIDSIRGVGYKLVVN 230


>gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 237

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   +++ E  LQ   + + S +   L+      +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVD--TAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFLV 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKF 230


>gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 233

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 10  ILIVDDDKEIRNLISVYLENEGLKTQKVEDAIQALQLLEEKEFDLIILDIMMPN--MDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 68  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|183599453|ref|ZP_02960946.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827]
 gi|188021700|gb|EDU59740.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827]
          Length = 224

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  ++     +  ++    +  D++ ++  L    E  L
Sbjct: 3   ILIVEDNALLRHHLTVQLKELGHQVDAAEDAKEADYFLRESCPDIAMVDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +  R+    +P++ ++   S Q  +   +SG DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIKRWRSTQINIPVLVLTARESWQEKVQALNSGADDYVTKPFHLEELVARMQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E     +    ++  V GE   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVLELDGFVIDLSRKEFTVNGEPVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKK++     D + + R  GY  D N
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQFHANDVIVTVRGQGYRFDVN 223


>gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 233

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 10  ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPN--MDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 68  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D     V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 232

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|307331346|ref|ZP_07610467.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|297159902|gb|ADI09614.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
 gi|306883024|gb|EFN14089.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +  +         + D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFRETKPDLVLLDLMLP--GRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|255013596|ref|ZP_05285722.1| two-component system response regulator [Bacteroides sp. 2_1_7]
 gi|262381792|ref|ZP_06074930.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298375645|ref|ZP_06985602.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
 gi|262296969|gb|EEY84899.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298268145|gb|EFI09801.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
          Length = 225

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  +  + + +     + + + D   +   +I      L
Sbjct: 4   ILLVEDEINIASFIERGLREFGHEV--YVAYDGAAGWELTQKNDFQLLILDIIMPKMNGL 61

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L +  R       P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 62  QLCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRS 121

Query: 120 KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +       G + +          G+V  L  +E R+LEY + N+G  +++  +   +
Sbjct: 122 GNESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   D     NVV+ +++ LR K+        + +   +GY ++
Sbjct: 182 WDK-DFDTNTNVVDVYVNYLRTKIDKDFEPKLIHTVVGVGYMME 224


>gi|255020960|ref|ZP_05293016.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969751|gb|EET27257.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acidithiobacillus caldus ATCC 51756]
          Length = 247

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +    S+E  E         +  ++  L   GE  +
Sbjct: 13  ILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLP--GESGV 70

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R       +P+I ++        +   +SG DD ++KP   RE+ ARV A+ RR
Sbjct: 71  AWCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRR 130

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++      G + V        +  E+  +   E R+L     N  +  ++  +   
Sbjct: 131 SYGGLTPTHVRIGELLVDIKAHRVTLDDELVGMGPTEFRMLRLFATNPDRVYSREALLDH 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+G     +EE  V+ HI +LR+ L      + +++ R  GY 
Sbjct: 191 IWGR-QSFIEERTVDVHIRRLRRALAKVGYANIIETVRGEGYR 232


>gi|257865841|ref|ZP_05645494.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257872176|ref|ZP_05651829.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
 gi|257799775|gb|EEV28827.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257806340|gb|EEV35162.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
          Length = 225

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D       ++  S+         +         ++ ++  L        
Sbjct: 4   ILLVEDEKEISDLIAFYLRNENFSVITCADGHEAQVQIEQNSFSLAILDVMLPD--ITGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L +IIR     P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 62  DLCKIIRKKHHYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRSTQ 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N    N+     + +  + R   +Q E   L   E  IL+ LM  +G+ V+  ++F  +
Sbjct: 122 YNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +G        N +  H+  LR+K+ +       + +   +GY I
Sbjct: 182 WGEKYYTSSNNTIMVHVRNLREKMHDTHKKSSYIKTVWGIGYKI 225


>gi|170755180|ref|YP_001780249.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120392|gb|ACA44228.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++  F +   EE L+   RE+V+ +   ++      L
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNV--FKASCGEEALEILEREEVNLMVLDIMMPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ +  R    +P++ +S        ++   +G DD V KP +H E+  R+ A+ RR   
Sbjct: 63  EVCKRAREKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++S+N      + +        +      L  RE  IL  L  NRG   +  +IF
Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVAINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++         N V  H+S+LR K+   + G   + +   +GY I+
Sbjct: 183 EKVWKER-YFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIE 229


>gi|310828642|ref|YP_003960999.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740376|gb|ADO38036.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D        +G  +E     +       S   D+  ++  L        
Sbjct: 5   ILVVDDEAAIVDLIKMELDFEGYQVETAYDGQEAIEKAQSFEPDLIVLDIMLPKV--NGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + +     VP+I ++    +   +   + G DD + KP  +RE+LAR+ A  RR   
Sbjct: 63  DVCKTLTPMMDVPIILLTAKTDIIDKVLGLELGADDYLTKPFDNRELLARIKAHLRRATK 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K ++   + GP+ +  D R   + G+   L  +E  +L  L +N  +   +  +  
Sbjct: 123 APAAKKTDAVIKNGPLSIMPDERTVLLDGKEVHLTPKEFDLLYLLASNLEQVFPRDTLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   +   V+ H+ ++R+K+  +     + +   +GY +
Sbjct: 183 KIWG-YDYYGDTRTVDMHVQRIRRKIDTQP-NKFIQTVFGIGYKM 225


>gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842]
 gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842]
          Length = 228

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N +  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTIMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|125623751|ref|YP_001032234.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|8177554|gb|AAF73970.1| putative response regulator Rra [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492559|emb|CAL97502.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070520|gb|ADJ59920.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 230

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G + E  ++        +S   D+  ++  L        
Sbjct: 6   ILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGIEEATSKDYDLILLDLMLPE--LDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S    +   D G DD + KP    E+LARV A +RR + 
Sbjct: 64  EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            + +    R      +V  L RRE  +L  LM N G  V +  + S 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G ++E  E NVV+ +I  LR K+  +     + + R LGY +
Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVM 226


>gi|68535406|ref|YP_250111.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
 gi|68263005|emb|CAI36493.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
          Length = 233

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D         G  +E  ++ +    L ++ + D   ++  +   G     
Sbjct: 10  LVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMP--GMDGFT 67

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P + ++    ++  +     G DD V KP    E++ R+  I RR+  
Sbjct: 68  LLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSS 127

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + +         I +  D  +    GE+  L   E ++L YL+ N    ++K +I   +
Sbjct: 128 EDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+ +K     + + R +GY +
Sbjct: 188 WN-YDFGGDGNVVESYVSYLRRKI-DKEEPHLIQTVRGVGYVL 228


>gi|282860432|ref|ZP_06269498.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564168|gb|EFB69704.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 243

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V++        +G   E             +   D+  ++  +       L 
Sbjct: 12  LIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKVEAYAPDLIVLDIQMPR--MDGLT 69

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R IR+  S  P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 70  AARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         ++      +R+  + R+         L R E  +LE  +A+  + + + Q
Sbjct: 130 AVAAGGTDPDDDVLSFADLRMDLNTREVTRGSRRVELTRTEFTLLEMFLAHPRQVLTREQ 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 190 ILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 236


>gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 248

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+   +   +S +  E L+   +    A+   L+  G   L
Sbjct: 7   ILIVEDDVDIANVLSLHLRDERYEV--VHSADGNEGLRLLEQGGWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++         + +    R+    G+   L  RE  +L Y   + GK  ++  +
Sbjct: 125 ALAKDSRIEAGNLRIAGLSIDPLTREAAANGKPIELTPREFDLLYYFAQHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +    + + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 231


>gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 228

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +   + +  + LQ    +D   I   ++      +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQ--KAEDAIQALQLLEEKDFDLIILDIMMPNMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|262376905|ref|ZP_06070132.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308250|gb|EEY89386.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 236

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  + G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPG-GVSGV 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     S++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDESLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKTIDANGLILDPVSQRVNFGNNILEMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWGG-NVYIEDRTIDVHIRRLRKVLEPYGVDRFVQTVRGTGYRF 227


>gi|227876270|ref|ZP_03994386.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269977977|ref|ZP_06184930.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
 gi|306819545|ref|ZP_07453252.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307701179|ref|ZP_07638201.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
 gi|227843231|gb|EEJ53424.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269933824|gb|EEZ90405.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
 gi|304647837|gb|EFM45155.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307613573|gb|EFN92820.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
          Length = 227

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +    G +              +    D+  ++  L   G   +
Sbjct: 5   ILVVDDDTALSEMIGIILESSGYTPSFCADGAKALGEFNRINPDLVLLDLMLP--GMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  S VP+I ++        +   ++G DD V KP   +E+LARVAA  R L+ 
Sbjct: 63  EICRRIRQTSVVPIIMLTAKTDTTDVVAGLEAGADDYVPKPFKPKELLARVAARLRHLET 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + +          G    L   E  +L  L +  G+ +++ ++   ++GL
Sbjct: 123 QAEEVLKAADLEINLASHQVTRGGRDLGLTPLEYDLLVALASKPGRVLSREELLEQVWGL 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                +  +V  H+ +LR K+  +      V + R +GY I
Sbjct: 183 R-HGADTRLVNVHVQRLRAKVEVDPDNPQVVLTVRGVGYRI 222


>gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
 gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
          Length = 234

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +++            +    ++  ++  L       L
Sbjct: 18  ILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPR--LDGL 75

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL + +RA    VP++ ++   +    +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 76  ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   I +    +    QG    LPR+E  +L  L+A  G+ + + ++   +YG
Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +DE VE N +E HI  LRKK       + + + R +GY +D
Sbjct: 196 -WDEDVESNALEVHIHHLRKK----FFPELIRTVRGVGYLVD 232


>gi|291535584|emb|CBL08696.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291540826|emb|CBL13937.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 229

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D         G  +E  N          S   D+  ++  L   G    E
Sbjct: 5   LIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLP--GIDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR     P++ +S        +     G DD + KP    E++ARV A   R +  
Sbjct: 63  ICKQIREEKNTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYERL 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V N+  E   IR+    R   V GE      +E  +L +L  +      K ++F 
Sbjct: 123 IGSNTVENDVIEIRGIRIDKTARRVWVNGEEKQFTTKEFDLLTFLAEHPNHVFTKEELFR 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 183 EIWDM-ESIGDIATVTVHIKKIREKIEMNTNKPQYIETIWGVGYRF 227


>gi|257875469|ref|ZP_05655122.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
 gi|257809635|gb|EEV38455.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
          Length = 225

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D       ++  S+         +         ++ ++  L        
Sbjct: 4   ILLVEDEKEISDLIAFYLRNENFSVITCADANEAQVQIEQNSFSLAILDVMLPD--ITGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L +IIR     P+I ++        +     G DD + KP    E++ARV A  RR   
Sbjct: 62  DLCKIIRKKHHYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRSTQ 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N    N+     + +  + R   +Q E   L   E  IL+ LM  +G+ V+  ++F  +
Sbjct: 122 YNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           +G        N +  H+  LR+K+ +       + +   +GY I
Sbjct: 182 WGEKYYTSSNNTIMVHVRNLREKMHDTHKKSSYIKTVWGIGYKI 225


>gi|255523369|ref|ZP_05390339.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188303|ref|ZP_06856695.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255513023|gb|EET89293.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047429|gb|EFG86871.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 230

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G   E   +   EE L +     +  I   ++  G   L
Sbjct: 5   ILVVDDDKDIVKLITKSLSYEGF--ETIPAYSGEEALCALEENHIDFIILDIMMPGMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR     P++ +S        +   + G DD + KP   +E+ +R+ A +R++  
Sbjct: 63  DVCRSIRKSYNTPILLLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFRKVDR 122

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N      P+ +     +  +      L  +E +IL  LM N    + + Q
Sbjct: 123 LFKEWNELSPNRETTDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLMHNPNTVLTREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+  ++G  DE  E N V  HI  +RKKL     +D + +   +GY 
Sbjct: 183 IYEYVWG--DEYGELNTVTVHIKNIRKKLG--PEYDFIKTIWGIGYK 225


>gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 224

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A +          +G  +   +       L  S    +  ++  L       +E
Sbjct: 6   LIIEDEANLARFIELDLTHEGYEVRVSHDGREGLELALSEEWGLILLDVMLPS--LNGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA  Q P+I I+   S+   +   D+G DD + KP    E+LAR+ A++RR+   
Sbjct: 64  VCRRIRAVKQTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHAP 123

Query: 123 NNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + V  D R  +   +   L +RE  +L   + N    + +  +   ++G 
Sbjct: 124 AEERLLTFKDLTVDLDARTVKKGNQFIELTKREYDLLVTFLQNTNIVLTRDTLLDKVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD  VE NVV+ ++  LR KL        + + R  GY +
Sbjct: 183 FDTEVETNVVDVYVRYLRHKLDETDKERYIQTVRGAGYVM 222


>gi|209520678|ref|ZP_03269429.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209498878|gb|EDZ98982.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 220

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E      ++   D++ ++  L  +    L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALRAAAAQLYDLALLDLGLPKR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216


>gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 256

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D         G  +E  ++ +    +  + R D   ++  +   G     
Sbjct: 33  LVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMP--GMDGFT 90

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R A    P + ++    ++  +     G DD V KP    E++ R+  I RR+  
Sbjct: 91  LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++          I +  D  +    GEV  L   E ++L YLM N    ++K++I   +
Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+  K     + + R +GY +
Sbjct: 211 WN-YDFGGDGNVVESYVSYLRRKIDTK-EPRLIHTVRGVGYVL 251


>gi|15839182|ref|NP_299870.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|9107813|gb|AAF85390.1|AE004066_4 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
          Length = 266

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D                +     + + +    D+  ++  L   G   LE
Sbjct: 41  LIVDDEVAIRDMVAFALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLP--GTSGLE 98

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  R  S   ++P+I ++        +   ++GVDD + KP   RE+LAR+ A+ RR 
Sbjct: 99  LTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRRT 158

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +     G +R+              P+   E R+L + M +  +  ++TQ+   +
Sbjct: 159 RDDDEDGSVAIGKLRIDGAAHRVYAGHVQVPIGPTEYRLLHFFMTHSERVYSRTQLLDHV 218

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  ++ HI +LR+ L      D V + R  GY  
Sbjct: 219 WGSG-VYIEERTIDVHIRRLRRTLEPYGLDDMVQTVRSAGYRF 260


>gi|110635445|ref|YP_675653.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286429|gb|ABG64488.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 229

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  E        D+  ++  +       +
Sbjct: 6   IMVVEDDEPLCVLLRYNLEAEGYQVEVVTRGDEAEVRLQENVPDLLVLDWMVPA--ISGI 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++   +    P+I ++        +    +G DD + KP    E +ARV A+ RR
Sbjct: 64  ELCRRLKMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFIARVRALLRR 123

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K    +   + G I +  +      +     L   E R+LE++M + G+  +++Q+   
Sbjct: 124 AKPEVLSTVLKVGDIVLDREAHRVYRRKNEIHLGPTEFRLLEFMMQHPGRVFSRSQLLDN 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G     ++E  V+ H+ +LRK +      D + + R  GY+I  N
Sbjct: 184 VWGET-IYIDERTVDVHVGRLRKAVNQGRMPDVIRTIRGAGYAIREN 229


>gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
 gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
          Length = 234

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +  +    L  S   D   ++  L       +
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAYELALSKPFDFIILDVMLPN--MDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE+LAR+ AI+RRL+
Sbjct: 62  EITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLE 121

Query: 121 VSNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          + G I+         V GE   L  +E  +L Y M  +G+ + + 
Sbjct: 122 PRQQTREEDQPAEILQVGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + + I+  FD   +  +V+ HIS LR+KL  +    + + + R  GY  
Sbjct: 182 TLLNRIWN-FDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKF 230


>gi|315651418|ref|ZP_07904443.1| response regulator [Eubacterium saburreum DSM 3986]
 gi|315486377|gb|EFU76734.1| response regulator [Eubacterium saburreum DSM 3986]
          Length = 235

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        DG ++  F +   E+ L    +ED+      ++  G   L
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGYTV--FKANNAEDGLAIIEKEDIHLAILDIMMPGMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I +S   +    +    +G DD V KP +  E+ ARV +  RR   
Sbjct: 64  EMCKKIRESYNFPIILLSAKSADIDKILGLGTGADDYVTKPFNTLELTARVKSQLRRYTQ 123

Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N           N      + +  D     +  +   L   E  IL  L +N GK  + 
Sbjct: 124 LNPNNIVVEKEDPNEIRLKGMIINKDNHKVIIDDKEIKLTPIEFDILYLLASNAGKVFST 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            +IF  ++         N V  HI +LR K+  +      + +   +GY I+
Sbjct: 184 DEIFERVWNEKVYEAN-NTVMVHIRRLRGKMNEDARVNKIITTVWGVGYKIE 234


>gi|302325444|gb|ADL24645.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 229

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 14/228 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D A V++            +  F   +  +        D+  ++  L   GE  
Sbjct: 5   MIYIVEDDAEVREMETYALKSGSFDVMAFECGKVMDEQVKVKVPDLFILDIMLP--GEDG 62

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L + + +R       +P+I ++   +    +   D G DD + KP    E+++RV A+ R
Sbjct: 63  LSILKRLRGQENTKNIPVIMLTAKGTELDKVKGLDLGADDYIAKPFGILELISRVRAVLR 122

Query: 118 RLKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R    ++ +        G + +    R   V G    L  +E  +L+ LM+  G   ++ 
Sbjct: 123 RSGRGSSESTESLSLALGGVILDDQRRSVTVDGVAVELTFKEYELLKLLMSRPGTVFSRQ 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           QI   I+G+ D  ++   V+ H+  LR+KL        V + R +GY 
Sbjct: 183 QILEKIWGV-DFDMDTRTVDMHVKTLRQKLGAHGS--IVQTVRNVGYK 227


>gi|302554102|ref|ZP_07306444.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471720|gb|EFL34813.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 246

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 23  LVVEDDATIVDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIMLP--GFDGLE 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 81  VCRRVQAARPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 140

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 141 ALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|295836531|ref|ZP_06823464.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74]
 gi|197699650|gb|EDY46583.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74]
          Length = 245

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDPTIVDAIAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++AH  VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + V    R   V+GE   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAATPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|29829512|ref|NP_824146.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606620|dbj|BAC70681.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 245

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDPTIVDAIAARLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 VVAATTPRTGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|253574045|ref|ZP_04851387.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846522|gb|EES74528.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 233

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   + D        +G      ++ +    +  +   D++ ++  +        E
Sbjct: 7   LIADDEPEIADLIELHLAREGYRCIKASNGQEALDVIQTQSVDLAILDIMMP--KIDGYE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R IR    +P+I +S   +    +     G DD + KP +  E++ARV A  RR    
Sbjct: 65  VTRQIREKHHLPIIFLSAKATDLDKITGLVRGADDYMTKPFNPMELVARVNAQLRRFIQL 124

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G + +  + R   + GE   L  +E  IL  L  +  K  +   I
Sbjct: 125 NPSVAGPTDEPVLEAGGLVIHPEHRTVFLYGEPVELTPKEFDILVLLANHPKKVFSSEHI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++G        N V  HI  LRKKL  ++     + +   +GY+ +
Sbjct: 185 FEKVWGEAYYEGG-NTVMVHIRSLRKKLGEDRHKNKLIKTVWGVGYTFN 232


>gi|196037923|ref|ZP_03105233.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196031193|gb|EDX69790.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 224

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GINGLQ 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        ++  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQIITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|75908656|ref|YP_322952.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75702381|gb|ABA22057.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 222

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G +            +  S+  D+  ++  L   G+  L
Sbjct: 4   ILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLP--GKDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R     VP+I ++    +Q  +  F++G DD + KP    E+L RV A  R+  
Sbjct: 62  DVLEELRGQGENVPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSG 121

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        ++G I +    R  ++  +   LP RE  + E    + G+ +++ Q+   
Sbjct: 122 GSQVMEEMVIKSGHIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ ++  LRKKL    G D +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKL----GNDLIETVRGMGYRL 220


>gi|329935953|ref|ZP_08285754.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304560|gb|EGG48437.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 225

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLP--GRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221


>gi|304439017|ref|ZP_07398937.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372506|gb|EFM26092.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 228

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   + D        +G   +  ++ E    +      D+  ++  +        E
Sbjct: 5   LVCDDETAIADIIKFNLKREGYEADTCSNGEECLEILKDNEYDLLILDVMMP--KLDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
             R +R  S +P+I ++        +   + G DD V KP   RE++ARV A  RR    
Sbjct: 63  TLRELRKFSYIPVIMLTAKDDEVDRVLGLELGADDYVVKPFSMRELIARVKANLRRREVE 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E G + +       + +G+   L  RE  +L++L  N GK  ++ ++ S+
Sbjct: 123 VKSVEVEETIERGDLEIDLKRYMVKKRGKTIELTLREFELLKFLAQNEGKVFSREELLSS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++G ++   +   V+  + +LR+K+ +K   +  + + R +GY  
Sbjct: 183 VWG-YEYFGDIRTVDVTVRRLREKIEDKDKDYRYIVTVRGVGYYF 226


>gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 229

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +    +  ++   E+ L+++ + D       ++  G    
Sbjct: 8   ILVVDDEQTITDFVSYALQKENFESDVVHN--GEDALEAAKKTDYDLFILDIMLPGMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R+ +  P++ +S   +    +   + G DD ++KP   RE++ARV A+ RR   
Sbjct: 66  ELCRRLRSFTSAPVLFLSARDTELDKVVGLEIGGDDYLSKPFGLRELIARVRALLRRGSG 125

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +      I +  D            L  RE  ++  LM + G  V++  +    +
Sbjct: 126 QMETGHAITASGITLDEDAHTATGDSGPIDLTPREFELMAALMKHAGNVVSREDLLRDAW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
           G ++   E   V++HI +LR K+    G+DP  V++ R  GY  
Sbjct: 186 G-WEYLTETKTVDTHIKRLRDKI-AAAGYDPSVVETVRGYGYRF 227


>gi|30021310|ref|NP_832941.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|29896864|gb|AAP10142.1| Two-component response regulator [Bacillus cereus ATCC 14579]
          Length = 224

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLH 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRTTG 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYDGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|103486293|ref|YP_615854.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976370|gb|ABF52521.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 221

 Score =  231 bits (591), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 105/222 (47%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A     G +++     E   +L S+   D + ++  L       L
Sbjct: 3   ILIVEDEPTLGPQLKATLEGAGYAVDLATDGEDGHFLGSTETYDAAILDLGLPE--IDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R  R     P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TVLDRWRREKRNFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +      + GE   L  +E ++L YL+ ++GK V++T++   IY 
Sbjct: 121 GNASSELTAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G D + + R LGY +D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GADIITTIRGLGYQLD 217


>gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 234

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +   +E     +       S   D   ++  L       L
Sbjct: 4   ILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPS--LSGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR    Q P++ ++   +    +   + G DD V KP   REI+AR+ AI RR +
Sbjct: 62  DVTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQ 121

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      N+   G I +  +       G    L  +E  +L Y     GK +++  
Sbjct: 122 SQPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDA 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + + ++G FD   E  +V+  +S LR K+  +    D + + R  GY ++
Sbjct: 182 LLNGVWG-FDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQME 230


>gi|228915802|ref|ZP_04079379.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843844|gb|EEM88916.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 236

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACENGEDALDYINMATYDLIVLDIMIP--GINGLQ 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 74  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 234

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +              +   ++           R D   ++  L       +
Sbjct: 5   ILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQ--LDGV 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E  + IR  + Q+P+I ++   S    +   + G DD + KP   +E+++R+ AI RR  
Sbjct: 63  EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               LK          + +       +  G+   L   E R+L++L  N  + +++ QI 
Sbjct: 123 RVVDLKKIVPELPVTGVTIDFKRLTVQKNGQPVALTPNEFRLLKFLFQNSNQVLSRDQIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             ++G ++   +  +V+ HIS LR KL +       + + R  GY
Sbjct: 183 EQVWG-YEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGY 226


>gi|282865224|ref|ZP_06274277.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282560147|gb|EFB65696.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 225

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDAKPDLVLLDLMLP--GRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|254695094|ref|ZP_05156922.1| Protein petR [Brucella abortus bv. 3 str. Tulya]
 gi|261215445|ref|ZP_05929726.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260917052|gb|EEX83913.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 227

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 135/225 (60%), Positives = 168/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDGEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|170757618|ref|YP_001779916.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169122830|gb|ACA46666.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 231

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +       +DG  +  F +    + L     E +  +   ++  G   L+
Sbjct: 5   LIVDDEAEIIELMEVYLLNDGYKV--FKATNGLDALNIINEEKIHLVILDIMMPGIDGLQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR    +P+I +S        +    +G DD + KP    E+LARV A  RR    
Sbjct: 63  VCMKIRKEYNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRRYVYL 122

Query: 123 NN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           N            E   I +        + G    L   E +IL  L +N GK  +   I
Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGTELKLTPTEYKILLLLASNSGKVFSAEDI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +  I+         N V +HI +LR+KL +       V++   +GY I+
Sbjct: 183 YKEIWAEKYFEGN-NTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230


>gi|329944314|ref|ZP_08292573.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328531044|gb|EGF57900.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 226

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +  +    +              D+  ++  L   G   +
Sbjct: 5   ILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVSPDLVLLDLMLP--GLDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IR+ S VP+I ++     Q  +   ++G DD V KP   +E+LARV+   RR   
Sbjct: 63  EICRLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 122

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +   G   +    V  L   E  +L  L  +  K   + ++ S ++G 
Sbjct: 123 GAAEHVRAGDLDIDVAGHQVKRGETVIALTPLEFELLVTLARSPWKVFTREELLSQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +    +  +V  H+ +LR K+        +  + R +GY +
Sbjct: 182 YQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRV 222


>gi|255657155|ref|ZP_05402564.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452007|ref|ZP_06893722.1| response regulator [Clostridium difficile NAP08]
 gi|296879598|ref|ZP_06903577.1| response regulator [Clostridium difficile NAP07]
 gi|296259198|gb|EFH06078.1| response regulator [Clostridium difficile NAP08]
 gi|296429401|gb|EFH15269.1| response regulator [Clostridium difficile NAP07]
          Length = 223

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G +    +       +  S   D+  ++  +        
Sbjct: 4   ILVVEDEKRMQSIIVEYMQKGGYTCVTADDGVEALTILKSNNIDLMILDVMMPY--LDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + R+ R  + +P+I ++     +  L  ++ G DD + KP   + +LA+V A+ RR   
Sbjct: 62  SVCRVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  N    G I +    R   V+ ++  L  +E  +L   M N  +  ++ ++ + I+G
Sbjct: 122 GIPKNSLILGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D       V++HI  LRKKL ++     + +    GY  + 
Sbjct: 182 -YDFEGNTRTVDTHIKTLRKKLGSEGHH--IVTLIRSGYKFEV 221


>gi|161621183|ref|YP_001595069.1| protein petR [Brucella canis ATCC 23365]
 gi|254702385|ref|ZP_05164213.1| protein petR [Brucella suis bv. 3 str. 686]
 gi|260568713|ref|ZP_05839182.1| response regulator receiver [Brucella suis bv. 4 str. 40]
 gi|261752947|ref|ZP_05996656.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|161337994|gb|ABX64298.1| Protein petR [Brucella canis ATCC 23365]
 gi|260155378|gb|EEW90459.1| response regulator receiver [Brucella suis bv. 4 str. 40]
 gi|261742700|gb|EEY30626.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
          Length = 227

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 134/225 (59%), Positives = 167/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + G IRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGSIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 232

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAIHIIETQPIDLVILDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  S +  E G + +  + R  +V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAESKSALELGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264]
 gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264]
          Length = 224

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 102/221 (46%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--AREDVSAIEAFLIGKGEK 59
            ++I+D   +          +G  +  F + + +E L  +     D+  ++  L      
Sbjct: 5   ILVIEDDPKISRLLEIELKFEGFDV--FFAYDGKEGLNMAKYGSYDLILLDVMLP--KMS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ + IR  SQVP+I ++    +   +  FD G DD + KP  + E+LAR+ A+ RR 
Sbjct: 61  GMEVCKRIREGSQVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKALLRRT 120

Query: 120 KV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           K         E   +++     +      +  L +RE  +L++L+ N+G  +++ +I   
Sbjct: 121 KKTVDHKGIFEFEDLKINYSTYEVFRGETLISLSKREFELLDFLVLNKGIVLSRDKILEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           ++G FD    +N+++ +I  LR K+        + + R +G
Sbjct: 181 VWG-FDYIGNDNILDLYIKYLRDKVDKPYERKFIQTVRGIG 220


>gi|154482555|ref|ZP_02025003.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
           27560]
 gi|149736580|gb|EDM52466.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
           27560]
          Length = 228

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 93/226 (41%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+  G       +G  ++     +           D+  ++  L        E
Sbjct: 4   LVVDDEKLIVKGLKFSLEQEGYEVDCAYDGQEAVDKAKETEYDIVLLDLMLPI--LTGYE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + IR  S +P+I ++        +   + G DD + KP +  E+ AR+ AI RR K  
Sbjct: 62  VCQQIREFSDMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNKRK 121

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                       +G +++  + +   ++     L  +E  IL+ L  N GK   + Q+ +
Sbjct: 122 APAKPEEPKVITSGKLKLDIEAKRLYIEDREIRLTVKEFDILKLLAENPGKIYGREQLLT 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            I+G      +   V+ ++ +LR+K+       + + +K  +GY  
Sbjct: 182 LIWGSK-YPGDARTVDVNVRRLREKVEENPAKPEYIHTKWGMGYYF 226


>gi|221067032|ref|ZP_03543137.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712055|gb|EED67423.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 230

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 97/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       ++G +++  ++      L S    D+  ++  L   G   L
Sbjct: 3   ILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLP--GIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   Q P++ ++    ++  +     G DD + KP    E++AR+  + RR   
Sbjct: 61  AVLAALRQTKQTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSGP 120

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S               + +    R     G+   L  +E  +L  L+  +G+ +++T++ 
Sbjct: 121 SVAQTAPEATTLRLSDLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLSRTELA 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++ + +   E NVVE  + +LR KL        + + R +GY ++
Sbjct: 181 SQVWDM-NFDSETNVVEVAVRRLRLKLDQPFEKPLLHTVRGMGYVLE 226


>gi|78357430|ref|YP_388879.1| two component transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219835|gb|ABB39184.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 229

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 103/227 (45%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +  F++++ +  L+ + RE    +   L+  G   L
Sbjct: 6   LLVVEDDGDILQLLTFTLESAGFEV--FSAMDGKTGLELAMREKPDLVVLDLMLPGMSGL 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + ++      + P+I ++        +   + G DD V KP   RE++ R+ A+ +R
Sbjct: 64  DVCKDLKRMPETQETPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIKAVLKR 123

Query: 119 LKVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + E        + + ++    E+ G+   L   E ++L  L+ NRG+   + Q+
Sbjct: 124 GAPFTEQEERTRWRVNGLSLDTEAHRVEIDGDEVTLTATEFKLLFELVRNRGRVRTRDQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G ++       V++H+ +LR+K+ +  G   +++ R +GY  
Sbjct: 184 LNTVWG-YEFEGYARTVDTHVRRLRQKIGDYAG--YIETIRGVGYRF 227


>gi|332289161|ref|YP_004420013.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
 gi|330432057|gb|AEC17116.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
          Length = 229

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 101/225 (44%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR----EDVSAIEAFLIGK- 56
            ++++D   +++            +     +E E++  +  R      +  ++  L G+ 
Sbjct: 5   ILIVEDERAIREMVALYLLKQNYEV-----IEAEDYQSAVNRLEEQPQLILLDWMLPGRS 59

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +E  +     +++P+I ++   + +  +   ++G DD + KP   + +LAR+ A++
Sbjct: 60  GIMFIEYLKKQEQTAKIPIIMLTARSAEEDCITCLNAGADDYITKPFSPKILLARIEALW 119

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR     +       +++    +   V+ +   L   E ++L +LM +  K  ++ Q+ +
Sbjct: 120 RRSYDPPSQIVSFENLQIDQQAQRVSVENQFVELSATEYKLLLFLMTHPEKVYSREQLLN 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G  D  VE+  V+S+I +LR+ L        V + R  GY  
Sbjct: 180 HIWG-DDIYVEDRTVDSYIRRLRRSLEPFQADRYVQTVRGFGYRF 223


>gi|312197790|ref|YP_004017851.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229126|gb|ADP81981.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 229

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D             ++G +++         W  S    DV  ++  L        E
Sbjct: 4   LVVEDEPRTAALLRRGLAEEGFAVDVVADGGDAVWQASEITYDVIVLDLMLPV--LDGFE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +RA  +  P++ +S    +   +   D G DD + KP    E+ AR+ A+ RR  +
Sbjct: 62  VCRRLRAAERWAPVLMLSARGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRRGAQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   +R+    R     G    L  +E  +LEYLM + G+ +++T I   ++ L
Sbjct: 122 ERPVVLDIDGLRLDPTVRAASRDGVELDLSPKEFALLEYLMRHPGQVLSRTTILDHVWDL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                  NVV+ +++ LR+K+    G   +++ R  GY +  N
Sbjct: 182 A-YDRNSNVVDQYVAYLRRKIDKPFGVAQLETVRGAGYRLRVN 223


>gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 226

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 96/224 (42%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  ++                 D+  ++  +       +
Sbjct: 6   ILLVEDEKQMSMFIQMELTHEGYKIDAAYDGREALEKVEDKEYDLILLDIMIPN--LNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--RL 119
           E+ R IR  S VP+I ++    +   +   D+G +D ++KP    E+LAR+    R   L
Sbjct: 64  EVCRRIRQFSHVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARIRVYERDKAL 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   ++ +   I + +        G+   L + E  +L+ L+ N+   + + ++   ++G
Sbjct: 124 KNQTDQIKVKNIVMDNKTHQVLRDGKEIELTKTEYNLLKMLLINKNIVLTRDKLIEEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D + + NVV+  I  LR K+ N+     + + R +GY I  N
Sbjct: 184 -YDYSGDTNVVDVFIRYLRSKIDNERQDKLITTIRGVGYVIKDN 226


>gi|295100813|emb|CBK98358.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 229

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D + +++        +G    GF S E       +   ++  ++  L   GE  
Sbjct: 1   MIYIVEDDSAIRELEQYALQSNGYEAVGFESSEPFWQAVHTTPPELVILDVMLP--GEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             + + +RA     ++P+I I+   S   T+   D G DD + KP    E L+RV A  R
Sbjct: 59  FSILKKLRAAPSLRRLPIIMITAKSSELDTVRGLDCGADDYITKPFGIMEFLSRVRAALR 118

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +     N      I + +      V G    L  +E  +L  L+ N    V +  I  
Sbjct: 119 RAEPEARPNVYSFREILLDNARHSVTVSGAPVELTYKEYSLLRLLLENTNLVVTRETILQ 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D +VE   V+ HI  LRKKL +      + + R +GY +
Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAG--KYICTVRKVGYKL 220


>gi|292486824|ref|YP_003529694.1| putative transcriptional regulator Ycf27 [Erwinia amylovora
           CFBP1430]
 gi|291552241|emb|CBA19278.1| probable transcriptional regulator ycf27 [Erwinia amylovora
           CFBP1430]
 gi|312170892|emb|CBX79151.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 251

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +G +++   +         S +  +  ++  L  +     
Sbjct: 35  ILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDR--DGA 92

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  R     +P++ +S   +L   +D  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 93  DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 152

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  + G I +    +   V  +   +  +E  +L  L+   G+ V +  +   +Y 
Sbjct: 153 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 212

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+    N +E H+  LR+KL    G D + + R +GY ++
Sbjct: 213 WQDD-TSSNTLEVHMHNLRRKL----GKDRIKTVRGVGYRLE 249


>gi|153953595|ref|YP_001394360.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146346476|gb|EDK33012.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 230

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  ++    +   E+ +     ++   +   L+      +
Sbjct: 6   ILIVEDDEEINNLIYNTLKREKYNM--IQAFNGEDAINKYHSDNFQLVILDLMLPYIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  S VP+I +S        +     G DD + KP   RE+ ARV +  RR   
Sbjct: 64  EVLRKIRESSTVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 123

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N   +   +++ +       + +   L  +E ++L+  + N  +   K QIF+
Sbjct: 124 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++       ++N V  HI +LR K+ +       + +   +GY +
Sbjct: 184 NVWENK-YIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKL 228


>gi|240144354|ref|ZP_04742955.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257203603|gb|EEV01888.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 229

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D         G  +E  N          S   D+  ++  L   G    E
Sbjct: 5   LIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLP--GIDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR     P++ +S        +     G DD + KP    E++ARV A   R +  
Sbjct: 63  ICKQIREEKNTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYERL 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V N+  E   IR+    R   V GE      +E  +L +L  +      K ++F 
Sbjct: 123 IGSNAVENDVIEIRGIRIDKTARRVWVNGEEKQFTTKEFDLLTFLAEHPNHVFTKEELFR 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 183 EIWDM-ESIGDIATVTVHIKKIREKIEMNTNKPQYIETIWGVGYRF 227


>gi|218231947|ref|YP_002367927.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218159904|gb|ACK59896.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 224

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLQ 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKITRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|163814718|ref|ZP_02206107.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
 gi|158450353|gb|EDP27348.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
          Length = 225

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E   + +    L  +   D   +   ++  G   L
Sbjct: 5   ILIVEDEEKIARFVELELVHEGYEVE--KAFDGRTGLDKALTGDFDLVVLDVMLPGLNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR  S VP+I ++   ++   +   D+G DD + KP    E+LAR+    +R   
Sbjct: 63  EVLRRIRKESVVPVIMLTARDAVMDKVSGLDAGADDYLTKPFAIEELLARIRVALKRRGT 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++V  +R E   + + +D  +  V GE   L  RE  +L  LM N+   + + ++ SA+ 
Sbjct: 123 VEVHTHRIEIRGVCMDTDRHEVTVDGESVELTNREFELLRTLMENKDIVMDREKLLSAVC 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   E N+++ ++  LR K+ ++ G   + + R +GY I
Sbjct: 183 G-YDYLGETNIIDVYVRYLRTKIDDRFGVKLITTVRGVGYVI 223


>gi|332993804|gb|AEF03859.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas sp. SN2]
          Length = 224

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D + +     +L    G S++  ++ E   +L +    D++ I+  L        
Sbjct: 3   ILIAEDDSRLLTQLDSLLQQHGYSVDLADNGEHALYLLNEYAYDLAIIDIGLP--KMDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R  R    + P++ ++     Q  ++  D+G DD + KP H+ E+LARV A+ RR  
Sbjct: 61  EVIRNARQEDIRCPVLILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARVKALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   + GPI + +   +  V      L   E +++EYLM N  K V+KT++   IY 
Sbjct: 121 GQANPVIQFGPISLDTVAEEITVNDAPLELTAYEYKVMEYLMLNPQKVVSKTELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D  ++ NV+E  + +LRKKL  +  F P+++ R  GY I+ N
Sbjct: 181 Q-DFDLDSNVIEVFVGRLRKKLDPENSFKPIETLRGRGYRINRN 223


>gi|153853514|ref|ZP_01994894.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
 gi|149753669|gb|EDM63600.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
          Length = 229

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G ++E  N  +    LQ +  ED   +   L+  G    
Sbjct: 4   ILIVEDEEAIADLERDYLELSGFTVEVANDGDI--GLQKALNEDYDLLILDLMLPGTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  DICRQVRDVKNTPIVMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++ +  R   V GE      +E  +L +L ++     +K ++F
Sbjct: 122 LTGSAAEKNKVIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYSKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 REIWDM-ESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGYRF 227


>gi|299133545|ref|ZP_07026739.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591381|gb|EFI51582.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 229

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A   D G  ++     E   +L  +   D   ++  L       +
Sbjct: 8   LLVVEDDPDLNRQLTAALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLP--KMDGI 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    R + +V P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 66  SVLESWRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 126 GHAQSELTCGPVVLDTRTGRVTVDGNPIKMTSHEYRLLAYLMHHAGRVVSRTELVEHLYD 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 186 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 221


>gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 226

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 AFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|326940923|gb|AEA16819.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 224

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLR 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|297537263|ref|YP_003673032.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297256610|gb|ADI28455.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 221

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D AL+ DG  A     G +++     +  +    +    +  ++  L       ++
Sbjct: 4   LLVEDDALLGDGVRAGLKQAGFAVDWTQDGQAAKLALETEEYALMVLDLGLP--KLSGID 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R A+  +P++ ++   ++   +   ++G DD + KP    E++AR+ A+ RR   
Sbjct: 62  VLKWLRGANLALPVLVLTARDTVADRVIGLNAGADDYLIKPFDLDELIARLNALLRRSAG 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + G I +          G++  L  RE  +   L+ + G+  ++ Q+   +YG 
Sbjct: 122 QVTLTLQHGDIELTPSTHQVSKNGQIVELAAREFSLFHELLLHAGRVQSREQLEQHLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E VE N VE HI  LRKKL    G   + + R +GY ID
Sbjct: 181 WGEEVESNSVEVHIHHLRKKL----GSALIRTIRGVGYVID 217


>gi|239988860|ref|ZP_04709524.1| putative two-component systen response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 246

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 99/235 (42%), Gaps = 23/235 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   V++        +G     +++G+++L   E        D+  ++  +    
Sbjct: 11  ILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYA----PDLIVLDIQMPR-- 64

Query: 58  EKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L   R IRA  S  P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ 
Sbjct: 65  MDGLTAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALL 124

Query: 117 RR-----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           RR               ++      +R+    R+         L R E  +LE  +++  
Sbjct: 125 RRSSYASAAAAGAEAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPR 184

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + + QI  A++G FD     N ++ ++  LR+K         V + R +GY++
Sbjct: 185 QVLTREQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 238


>gi|167034787|ref|YP_001670018.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861275|gb|ABY99682.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 227

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G  A     G++++   +      +  +A+ DV  ++  L    E  L+
Sbjct: 4   LLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGLPD--EDGLK 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R +R   +  P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N  E GP+R      +  + G+   L RRE+ +L+ L+ N G+ ++  Q+   +YG 
Sbjct: 122 RAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL    G   V++ R LGY +
Sbjct: 182 SDE-VESNALNVHIHHLRRKL----GNGIVETVRGLGYRL 216


>gi|325963934|ref|YP_004241840.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470021|gb|ADX73706.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 224

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS----LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   + +    +  +DG       +G  +L+    +  S+R D+  ++  L   G
Sbjct: 5   ILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALD----VFRSSRPDLVLLDLMLP--G 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +E+ R +RA S VP++ ++        +   +SG DD V KP    E++ARV A  R
Sbjct: 59  MDGIEVCRQVRAESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR 118

Query: 118 RL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +        I +   G       E   L   E  +L  L     +   +  +   
Sbjct: 119 PGDQKAPETLRIADITIDVAGHTVSRGNERISLTPLEFDLLVALARKPWQVFTRELLLEQ 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           ++G +  A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 179 VWG-YRHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGYK 221


>gi|238925846|ref|YP_002939364.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|238877523|gb|ACR77230.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
          Length = 248

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D       ++   +  F           S   D++ ++  L        
Sbjct: 22  ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPD--MNGF 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L ++IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 80  SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 139

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +         +      + +     +  + GE+  L   E  IL  L+++ G  V+  +
Sbjct: 140 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIEE 199

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +F A++     +   + +  HI  LR+KL +       + +   +GY I
Sbjct: 200 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248


>gi|229545685|ref|ZP_04434410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256619196|ref|ZP_05476042.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256853258|ref|ZP_05558628.1| response regulator [Enterococcus faecalis T8]
 gi|257422480|ref|ZP_05599470.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300861021|ref|ZP_07107108.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307275837|ref|ZP_07556976.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307291860|ref|ZP_07571731.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|229309135|gb|EEN75122.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256598723|gb|EEU17899.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256711717|gb|EEU26755.1| response regulator [Enterococcus faecalis T8]
 gi|257164304|gb|EEU94264.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300850060|gb|EFK77810.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497126|gb|EFM66672.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306507529|gb|EFM76660.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|315029565|gb|EFT41497.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315032037|gb|EFT43969.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315156147|gb|EFU00164.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
          Length = 236

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G  +    + +    L  S + D   ++  L   G   LE
Sbjct: 5   LVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLP--GMDGLE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RRLK 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +                G IRV     +  V+ +   L  +E  +L Y M  + + + + 
Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   I+  +D A +  +V+ HIS LR K+  +      + + R  GY  
Sbjct: 183 TLLERIW-QYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRF 231


>gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 799

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            +E     +    L      D+  ++  L       +
Sbjct: 3   LLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLP--KLDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  +  R      P++ ++        +   D+G DD + KP + +E+LARV A+ RR  
Sbjct: 61  QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S+    + GP+ +         +GE+  L  +E  ILE  + NR +  +++ +   ++ 
Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            FDEA  EN V + I  LR+KL+      + +++   LGY ++ N
Sbjct: 180 SFDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLNKN 224



 Score = 75.3 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G S+      +    +      D+  ++  +       +
Sbjct: 500 IMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPE--ISGI 557

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           EL +++R       +P++ +S +   +   + F +G DD + KPI   E++ R+
Sbjct: 558 ELCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611



 Score = 39.1 bits (91), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D+  ++    +      G+  +    +   +   + +R DV  ++     + E  L
Sbjct: 375 LLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEICL 434

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           EL + IR     +P +  SD  +    +     G    + KP
Sbjct: 435 ELLKDIRQLIPPIPTVITSDQNNFSVRVKVARLGAVGFLQKP 476


>gi|311696375|gb|ADP99248.1| DNA-binding response regulator [marine bacterium HP15]
          Length = 226

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V +  +    +    ++     +    + +S   D+  ++  L   G   L 
Sbjct: 4   LVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRMLP--GMDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA  +QVP++ +S    +   ++    G DD + KP    E+LAR+ ++ RR + 
Sbjct: 62  IIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNRQ 121

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S           + +    R  +  G+   +  RE R+LEYLM N G+ V +T +   ++
Sbjct: 122 SAETETVLRVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+  +     + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHISRLRAKIDKEFDTPLLQTIRGAGYML 222


>gi|302558457|ref|ZP_07310799.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus
           Tu4000]
 gi|302476075|gb|EFL39168.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus
           Tu4000]
          Length = 246

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 23  LVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLP--GFDGLE 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   +P++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 81  VCRRVQAQRPLPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMERA 140

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 141 ALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|239617230|ref|YP_002940552.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506061|gb|ACR79548.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 226

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +   +E    LE           D+  ++  L        
Sbjct: 4   ILLVEDDETLAMGIKYALEQEAFLVEVATELESARKRIDEKDFDLILLDVMLPN--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L + IR +S +P+I ++        +   + G DD + KP   +E++AR+ A  RR+  
Sbjct: 62  QLCKEIRTYSDLPIIFLTARDEEVNIVMGLELGADDYITKPFKLKELVARIRANLRRIEG 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  N    +G IR+    +   V+     L   E R+L  LM N G+ + + Q+   ++
Sbjct: 122 KKTVNRYLISGQIRLDIVNQKLMVEDAEQHLTPVEFRLLFALMDNAGRILTRDQLLGYVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
               + V++N +  HI KLR+K+ +     + + + R LGY 
Sbjct: 182 NTESDFVDDNTLSVHIRKLREKIEDDPSKPEHILTVRGLGYR 223


>gi|51894424|ref|YP_077115.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
 gi|51858113|dbj|BAD42271.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
          Length = 232

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +++        +   LE  + L     ++ +   D+  ++  +       
Sbjct: 8   VVLVVDDEPRMRELIRLYLAAECTVLEAGDGLTALRAVRDAG-PDLVLLDVMMPR--LDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  + IR  S VP+I ++    +   +     G DD + KP   RE+ ARV A+ RR  
Sbjct: 65  WQTLQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSA 124

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +N     G + +    R     G   PL  +E  +L  L A+ G+  ++ ++   I
Sbjct: 125 GQVEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D   +   V++HI  LR KL    G   + +   +GY  
Sbjct: 185 WGP-DFQGDARTVDAHIKNLRDKLGEGAG--LILTVWGVGYRF 224


>gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 242

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L++  + D   +   ++       
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDV--VTAGDGEEALETFRKADPDLVVLDVMMPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGTTGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 232

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+   E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|170781102|ref|YP_001709434.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155670|emb|CAQ00790.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                  A+ D+  ++  L   G   +
Sbjct: 5   ILVVDDDTALAEMIGIVLRTEGFEPSFCADGGQALAAFHEAKPDLVLLDLMLP--GLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  +IRA S +P+I ++        +   +SG DD + KP + +E++AR+    R    
Sbjct: 63  QVCDLIRAESGIPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRPAAA 122

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++    + G + V  +G +     +   L   E  +L  L +   +   +  +   ++G 
Sbjct: 123 ASPGLLQVGDLVVDVEGHEVRRGEDRINLTPLEFDLLHALASRPQQVFTREMLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +    +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 182 YQYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGYR 221


>gi|269216256|ref|ZP_06160110.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
 gi|269130515|gb|EEZ61593.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
          Length = 230

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G S++   +   EE L ++ R+D       ++  G    
Sbjct: 8   ILIVDDEQSITDFVSYSLKKEGFSVD--TAANGEEGLAAAMRKDYDLFILDIMLPGMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R +RA +  P++ +S   +    +   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 66  ELCRRLRARTASPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGRL 125

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++     G + +       +       L  RE  +L  LM   GK   + ++    
Sbjct: 126 EDSPTDQSISAGGVTLNEGRHSADGPNGPIDLTPREFELLAALMKVAGKVATREELLREA 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +  ++   E   V++HI +LR KL       + +++ R  GY  
Sbjct: 186 WD-WEYITETKTVDTHIKRLRDKLSAAGIDQNVIETVRGYGYRF 228


>gi|307154731|ref|YP_003890115.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984959|gb|ADN16840.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 225

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  ++     +  +    +   D+  ++  L       L
Sbjct: 3   ILLVEDEPGIAQFISQGLKETGYVVDIAPDGQQGKNYVDAVEYDIIILDIMLP--KIDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   IRA    VP++ ++   S++  +   + G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  KLLGEIRAKKVSVPILLLTARDSVEDRVKGLNQGADDYMVKPFAFSELLARIRALQRRPP 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  N     G + +    R+ +   ++  L   E ++LEYL+ N  + + +TQI   ++ 
Sbjct: 121 LQFNTVLALGDLTMDLVTREVKRGDKLIDLSPLEFKLLEYLLRNCNQVLTRTQIGEQVWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D     NVV+ ++  LR+K+        + + R +GY +
Sbjct: 181 L-DFYSNSNVVDVYVGYLRRKIDRGFQRPLLHTVRGVGYCM 220


>gi|169335564|ref|ZP_02862757.1| hypothetical protein ANASTE_01979 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258302|gb|EDS72268.1| hypothetical protein ANASTE_01979 [Anaerofustis stercorihominis DSM
           17244]
          Length = 226

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 100/222 (45%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
             +++D   + +            ++ F + E         +  +  ++  L G  G   
Sbjct: 5   IYVVEDDNNISELLKCSLEAFNYYVKVFENCEDMMIALKEEKPKLMLLDIMLPGMSGIDA 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L+L +    +  +P+I +S   S    ++  + G DD V KP    E+ +R+ ++ RR  
Sbjct: 65  LKLLKNSNKYKSIPIIILSAKSSEIDKVNALELGADDYVTKPFSVLELSSRIKSVLRRSY 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           KV +N      I +  +       GE   L ++E +IL Y++ N+G+ V + ++ + ++G
Sbjct: 125 KVEDNILNYKDITIDKENYLVSHDGEEVILTKKEYKILLYMLENKGRVVTREELLNEVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +D   E   ++ H+  LR K+ ++   +  + + R +GY +
Sbjct: 185 -YDFEGESRTLDMHMKTLRNKIGSEDDKYKYIKTIRGIGYKL 225


>gi|126740175|ref|ZP_01755864.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126718630|gb|EBA15343.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 234

 Score =  231 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D         A   ++G +++   +        ++A  DV  ++  L       L
Sbjct: 13  ILVVEDDKTTGPYVAAGLREEGHTVDLLANGREGLVQAAAADYDVLVLDRMLPD--LDGL 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + +R A ++ P I ++    +   ++  ++G DD + KP    E+ ARVAA+ RR  
Sbjct: 71  SLIKTLRGAGNRTPAIMLTAVSGVNDRIEGLEAGADDYLVKPFAFGELSARVAALARRPG 130

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+    R   G + +          G+  PL  RE  +LE+L+  +G+   +T +  A++
Sbjct: 131 LQQQETRLCVGDLEMDLVQHKVTRAGQEIPLLPREFTLLEHLLRRKGRVQTRTMLLEAVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +     + NVVE+HIS+LR K+      + +++ R  GY I
Sbjct: 191 DIT-FDPQTNVVETHISRLRAKVDRPFDNELIETVRGAGYRI 231


>gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 232

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--VKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 120 ----KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               KV+ N+     G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVAENKSALAIGGVVIDPEQRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQHVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|145301166|ref|YP_001144007.1| two-component system blr regulon response regulator [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853938|gb|ABO92259.1| two-component system blr regulon response regulator [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 224

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D A + D  I     DG  +E F   +         R D   ++  L       
Sbjct: 5   VIWLVEDEASIADTLIYALQTDGFEVEWFPLGQPLLTRLEQTRPDFLILDVGLPD--ISG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + +RA    PL+ ++        L   + G DD V KP   RE+ ARV  I RR +
Sbjct: 63  FELCKQVRARCDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRRSQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  +  + +  +       G+   L R E  +L+ LM   G+  ++ Q+   ++  
Sbjct: 123 PVATQP-SQLLALDEERARISFHGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWSG 181

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +E+++   V++HI  +R KLR      + + + R LGYS++
Sbjct: 182 AEESLD-RTVDTHIKTIRAKLRERDADANLILTHRGLGYSLE 222


>gi|308188702|ref|YP_003932833.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1]
 gi|308059212|gb|ADO11384.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1]
          Length = 223

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G S++ F S E       +A  D   ++  L  +    L
Sbjct: 3   ILLIEDDRLIGDGIKAGLSKLGFSVDWFTSGESGCNALEAAPWDAVILDLSLPER--DGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R   + VP++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILRQWRQQGNDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +           E   L  RE  +LE  M N G+ + ++Q+   +Y 
Sbjct: 121 GQLQPELRHGNVVLIPGSHSVMRDDEAIELKSRELALLELFMRNPGRVLTRSQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  V  N VE HI  LRKKL    G   + +   +GY++
Sbjct: 180 SWDADVSSNAVEVHIHHLRKKL----GSGFIRTLHGVGYTL 216


>gi|229000526|ref|ZP_04160071.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
 gi|229007908|ref|ZP_04165478.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228753336|gb|EEM02804.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228759238|gb|EEM08239.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
          Length = 248

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +++        +G  +    N +E  + L  + + D+  ++  +  K    
Sbjct: 13  ILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWD-LFLTHQPDLILLDLMMPKK--DG 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            EL   IR  S VP+I ++     +  +     G DD V KP   RE++ RV  I +R  
Sbjct: 70  WELCEEIRQQSNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKRGN 129

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +  +   E   ++++   R   V      L  +E  +L  +  +  +  +++Q
Sbjct: 130 QIPIQEEEFLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAKHPKQVFSRSQ 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
           +   I+  F+     + V   +S+LR+KL      +  + +   +GY  + N
Sbjct: 190 LLELIWD-FEYDGVTHTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYCFEPN 240


>gi|88797980|ref|ZP_01113567.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
 gi|88779177|gb|EAR10365.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
          Length = 225

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +   A F  +G +++   S +   +L   A  D + I+  L       L
Sbjct: 3   LLIIEDEQSLLEHLQAGFKKEGFAVDTSTSGKEGLFLGKEADYDAAIIDLGLPE--LDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R +RA     P+I ++     +  +D  +SG DD + KP    E+LARV A+ RR  
Sbjct: 61  DVIRELRAAGQDYPIIVLTARGHWRDKVDGLESGADDYLAKPFIFDELLARVKALLRRSV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++++    G   + +  +   V G    L   E   LEYLM ++ K V+KT++   +Y 
Sbjct: 121 GMASSTLTIGLYELDTSAKSVRVDGRSVELTSYEYNTLEYLMTHKNKVVSKTELTEHLYE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + NV+E  I +LRKKL      +P+ ++R LGY  + +
Sbjct: 181 Q-DYDRDSNVIEVFIRRLRKKLDPDGERNPILTQRGLGYRFNAD 223


>gi|16273595|ref|NP_439850.1| transcriptional regulatory protein [Haemophilus influenzae Rd KW20]
 gi|145629192|ref|ZP_01784991.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21]
 gi|145633643|ref|ZP_01789370.1| transcriptional regulatory protein [Haemophilus influenzae 3655]
 gi|145639135|ref|ZP_01794742.1| transcriptional regulatory protein [Haemophilus influenzae PittII]
 gi|145641031|ref|ZP_01796612.1| transcriptional regulatory protein [Haemophilus influenzae R3021]
 gi|148827131|ref|YP_001291884.1| transcriptional regulatory protein [Haemophilus influenzae PittGG]
 gi|260581049|ref|ZP_05848871.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|1176110|sp|P45337|QSEB_HAEIN RecName: Full=Transcriptional regulatory protein qseB
 gi|1574562|gb|AAC23354.1| transcriptional regulatory protein (ygiX) [Haemophilus influenzae
           Rd KW20]
 gi|144978695|gb|EDJ88418.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21]
 gi|144985520|gb|EDJ92336.1| transcriptional regulatory protein [Haemophilus influenzae 3655]
 gi|145271697|gb|EDK11607.1| transcriptional regulatory protein [Haemophilus influenzae PittII]
 gi|145274192|gb|EDK14057.1| transcriptional regulatory protein [Haemophilus influenzae 22.4-21]
 gi|148718373|gb|ABQ99500.1| transcriptional regulatory protein [Haemophilus influenzae PittGG]
 gi|260092289|gb|EEW76230.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|309750716|gb|ADO80700.1| Probable two-component regulator,transcriptional regulatory
           component QseB [Haemophilus influenzae R2866]
          Length = 221

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L       L
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLP--KLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           E+ +  R+ H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A+  RR 
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E   +++  + R   +  +   L  RE ++LE  M N+ + ++++ I   +  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKL-S 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 216


>gi|315303906|ref|ZP_07874373.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
           F6-596]
 gi|313627723|gb|EFR96389.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
           F6-596]
          Length = 238

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 97/231 (41%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E  +  +    +  +   +V  ++  +   G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALDMALNNNYEVILLDLMMP--GKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R     P++ ++        +  F+ G DD + KP   RE++ RV A+ RR K +
Sbjct: 66  VCRELREFKATPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQN 125

Query: 123 NNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +                +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEEGMNGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +  +     + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235


>gi|256544640|ref|ZP_05472012.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC
           51170]
 gi|256399529|gb|EEU13134.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC
           51170]
          Length = 219

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D   +++  +    +    + GF   +    ++S   E+V  +   ++   +  
Sbjct: 1   MIYVVEDDKAIRNLVLYALKEKNYQVRGFE--DGLNVVESLKNENVDLLILDIMLPEKDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S +P+I ++        +   +SG DD + KP    E+++R+ A+ RR +
Sbjct: 59  IEILKEVREFSDIPIIMLTAKNDEYDKVLGLESGADDYITKPFSILELISRIKAVLRRSE 118

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        IRV    R  ++ GE   L  +E  +L   ++N G  + +      I+G
Sbjct: 119 KKDGEHLSYKNIRVNIKKRTAKIDGEKIDLTYKEFEMLLLFLSNIGNVITREDFLLKIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL++      + + R LGY +
Sbjct: 179 -YDYEGETRTVDVHIASLRNKLKSAGIH--IKTVRNLGYKL 216


>gi|229128485|ref|ZP_04257464.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228654988|gb|EEL10847.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 236

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLH 73

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 74  VLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRTTG 133

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYDGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|85373556|ref|YP_457618.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
 gi|84786639|gb|ABC62821.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
          Length = 225

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 107/222 (48%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +    +G +++     E   +L S+   D   ++  L       L
Sbjct: 3   ILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHFLGSTEDYDAVILDLGLPE--IDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  + R      P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TVLGMWRKEGRDFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +      ++GE   L  +E ++L YLM ++GK V++T++   IY 
Sbjct: 121 GNTSSELTAGDVRLDTRSGRVSLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G + + + R LGYS+D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GAEVITTIRGLGYSLD 217


>gi|19553859|ref|NP_601861.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391500|ref|YP_226902.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|145296659|ref|YP_001139480.1| hypothetical protein cgR_2566 [Corynebacterium glutamicum R]
 gi|21325434|dbj|BAC00056.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326842|emb|CAF20686.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846579|dbj|BAF55578.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 241

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G      +         +  R DV  ++  L   G   LE
Sbjct: 17  LIVEDERPLARMISLYLSKAGFDTTTIHDGAAAPDKVAHLRPDVVILDLGLP--GLDGLE 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA +   ++ ++   S +  +   + G DD + KP + RE++ R+ ++ RR +  
Sbjct: 75  VCKRIRAFTDCYILMLTARGSERDRITGLEIGADDYITKPFNIRELVIRIQSVMRRPRKI 134

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   +       G I + +   +  V+G    L R E  +L+ LM   G+ V++  + S 
Sbjct: 135 DETIQNGLTLTYGHIELDTLAHEVTVKGVGVTLTRTEFELLQALMHKPGEAVSRRDLVSQ 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 195 VWDTT-WVGDERIVDVHIGNLRRKLEAPAPGSHFIDTIRGVGYRM 238


>gi|308234020|ref|ZP_07664757.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Atopobium vaginae DSM 15829]
          Length = 246

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++  I    +    ++ F+          +    +  ++  L        
Sbjct: 15  IYVVEDDVSIQEIEIIALKNSNYDVQAFSCAADFFAALKTRTPQLILLDIMLPDA--DGN 72

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +R     S +P+I I+   +    +   D+G DD + KP    E+L+R+ A+ RR
Sbjct: 73  TITRTLRSNAQWSHIPIIMITAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRR 132

Query: 119 LKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +          +    G I +        V      L  +E  +L YLM + G    + 
Sbjct: 133 AQTPAQMPADKYSVCRVGAIMLDPARHYVCVHDTPVNLTHKEYDLLHYLMLHEGLVFTRE 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  A++G FD   E   V+ HI  LR+KL +      V + R +GY +
Sbjct: 193 VLMQAVWG-FDFEGESRTVDMHIKTLRQKLGDASC--YVHTVRGVGYCV 238


>gi|296129072|ref|YP_003636322.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020887|gb|ADG74123.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 256

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 92/231 (39%), Gaps = 19/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +     +G ++E            +  + DV  ++  L   G   LE
Sbjct: 20  LVVEDEPAIAQAIVHRLTAEGWTVEAVGDGHAGVAAAARLQPDVVVLDVMLP--GIDGLE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY------ 116
           + R I+A   VP++ ++        L     G DD + KP   RE++AR   +       
Sbjct: 78  VCRQIQAERPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARTKVLLRRTERA 137

Query: 117 ------RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                   ++  +     G + + S  R  +  G    L   E  +L  L ++    + +
Sbjct: 138 ARAAERATVQQPDPPLVVGDVTIDSAQRRVQRAGTEVHLTPTEFDLLLTLASSPRTVLTR 197

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + ++   D +     V+SH+  LR+KL    G D + +   +GY+ +
Sbjct: 198 ERLLADVWDWVDASG-TRTVDSHVKALRRKL----GPDLIRTVHGVGYAYE 243


>gi|312197681|ref|YP_004017742.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229017|gb|ADP81872.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 239

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D         G  +    S        ++ R D+  ++  L       L
Sbjct: 8   LLVVDDEPNILDMLRMALRFHGFDVVTARSGHEATAEVTARRPDLLVLDIMLPD--GDGL 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R  R    +VP++ ++        +     G DD V KP    E++AR+ A+ RR +
Sbjct: 66  ELCRRWREQGVEVPVVFLTARDRHADKIAGLTYGGDDYVTKPFSIDELVARIRAVLRRTR 125

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +          G+   L   E R+L YL+ N  + +++ QI 
Sbjct: 126 REQAADTGTAPLTFADLTLDETTHSVTRAGQHVELAPTEYRLLRYLLVNPNRVLSREQIL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A++   D      VV+ ++S LR+KL    G   + ++R  GY++
Sbjct: 186 DAVWDT-DYRGGATVVDQYVSYLRRKL-APYGPPLIHTQRGFGYAL 229


>gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
 gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
          Length = 237

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   ++  +E LQ   + + + +   ++      +
Sbjct: 6   ILIADDDKEIRNLLKIYLERELYMVD--TAINGDEALQLFNKNNYNLVILDIMMPKVDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP++ ++        +     G DD + KP    E++ARV A+ RR  V
Sbjct: 64  EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123

Query: 122 --SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             SNN  +         + +  +        E   L  +E  +L++  +N G+   KTQ+
Sbjct: 124 LGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTIWGIGYKF 230


>gi|29831606|ref|NP_826240.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608722|dbj|BAC72775.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 229

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        ++ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLP--GRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLGIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|229030904|ref|ZP_04186923.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228730398|gb|EEL81359.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 236

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLQ 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 74  VLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRNTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        ++  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQIITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 228

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR +  +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIRENRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D     V+G+   L  +E  ILE L+ N+G  ++  +I+
Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLVRNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|160902340|ref|YP_001567921.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359984|gb|ABX31598.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 242

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +    S +           D   ++  L G      
Sbjct: 6   IMIVEDDPAISEMLSLNLTKEGYEVITAVSADEALKKLEEKDTDFFIVDIMLPGS-MDGF 64

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L RI+++   +   P++ +S        +   + G DD V KP + RE++AR+ +I+RR
Sbjct: 65  DLIRILKSSEDYRNTPVLILSAKDDAADKVAGLELGSDDYVTKPFNVRELIARIKSIFRR 124

Query: 119 LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              S    E GP       + + ++  +  V G    L   E  +L +L  N GK  ++ 
Sbjct: 125 QAASAQMKEEGPKKITAKDLIIDTERLEVWVGGNPVSLTPLEFDLLVFLAKNEGKVFSRD 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+  +      + + R  GY  
Sbjct: 185 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 233


>gi|314934421|ref|ZP_07841780.1| DNA-binding response regulator [Staphylococcus caprae C87]
 gi|313652351|gb|EFS16114.1| DNA-binding response regulator [Staphylococcus caprae C87]
          Length = 225

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D   +   ++      F  L  EE L    +E+V      ++  G    E
Sbjct: 6   LVVDDDRKILDYVKSHLINEHFETHAF--LSGEEALHFLEKENVDIAIVGIMMNGINGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L + ++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ R  ++ 
Sbjct: 64  LCKTLKEDYDIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRSYQIN 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  + G + +     +  V  +   LP +E ++L  L++N      +  I   I+G F
Sbjct: 124 AESELKLGNLTLNQPYMEISVDAKTINLPNKEFQLLFLLVSNPKHIFTRNDIIEKIWG-F 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   ++  V+ HI +LR+KL        + + R  GY ++ +
Sbjct: 183 DYEGDDRTVDVHIKRLRQKLSRLGASISIHTVRGQGYKVNQD 224


>gi|27378232|ref|NP_769761.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27351379|dbj|BAC48386.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 224

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +         D G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   LLVVEDDPDLNRQLTKALTDAGYVVDRAFDGEEGHYLGDNEPYDAVVLDIGLPKKDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  R  R    +P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 63  LEAWR--RNGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 216


>gi|310827934|ref|YP_003960291.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739668|gb|ADO37328.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 227

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  + L    G + +   S     +        +  ++  L   G    
Sbjct: 6   ILIVEDDVNISNMLVDLLTHSGYTADTAYSGTEALFCLEKKSYALILLDLMLP--GMSGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  S   +I +S      T +    +G DD + KP ++ E+LAR+ A+ RR   
Sbjct: 64  EVLKSLRQTSDTLVIAVSAKDDSPTKISLLKNGADDYITKPFNNEELLARIEALLRRNSG 123

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +S        + +     +  ++G+   L +RE +ILE LM N  +  +K  I+  +
Sbjct: 124 NTSLSGKTLTYKGLTLNPSTYEVYLKGQPLSLTKREYKILELLMQNPQRVFSKNVIYETV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSI 220
           +       E+N +  HIS LR+KL  K+  D   + +   +G+ +
Sbjct: 184 WEDL-FLGEDNAINVHISNLRQKL-AKIDPDEAYIQTVWGIGFKM 226


>gi|302534786|ref|ZP_07287128.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302443681|gb|EFL15497.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 229

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +        A+ D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLP--GRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 68  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G    L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLVIGDLVIDVAGHSVKRDGASIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|260574724|ref|ZP_05842727.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodobacter sp. SW2]
 gi|259023141|gb|EEW26434.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodobacter sp. SW2]
          Length = 230

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D A  ++        +G  +    + + EE L     E    I    +      
Sbjct: 8   LVLLVEDEAAQREVLAYNLAAEGYRV--VQAGDGEEALDLIGDELPDLIVLDWMMPKVSG 65

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R ++   +   VP++ +S        +   ++G DD V KP    E++ARV A  R
Sbjct: 66  LEVCRRLKTRPETRAVPILMLSARSEEVDRVRGLETGADDYVIKPYSVAELMARVRANLR 125

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R + ++     E G IR+  +        +V  L   E R+L   M   G+  ++ Q+  
Sbjct: 126 RARPASVGVVLEHGDIRLDGETHRVYRADKVLKLGPIEFRLLATFMERPGRVFSREQLLD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G  D  VE   V+ H+ +LR+ L    G DP+ + R  GY++
Sbjct: 186 RIWGR-DINVETRTVDVHVGRLRRALCVFGGDDPLRTVRGAGYAL 229


>gi|238749640|ref|ZP_04611145.1| Two-component response regulator of virulence determinant [Yersinia
           rohdei ATCC 43380]
 gi|238712295|gb|EEQ04508.1| Two-component response regulator of virulence determinant [Yersinia
           rohdei ATCC 43380]
          Length = 223

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLP--GEDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   +  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIDFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL+ +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQAEHEGEVITTIRGQGYRFDTN 223


>gi|229086169|ref|ZP_04218386.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228697141|gb|EEL49909.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 225

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +    + + ++ L+  A   +  I   ++        
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEV--IEAEDGKQALELFAEHTIDLIMLDIMLPEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S+VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R   +
Sbjct: 64  VCRRIRKESEVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVVEENTLSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFE 224


>gi|255505806|ref|ZP_05348241.3| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
           14469]
 gi|255265751|gb|EET58956.1| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
           14469]
          Length = 236

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 12/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D   A     G  +  F + + +E L+   +  +  +   L+  G    E
Sbjct: 10  LIVDDETMICDSVSAYITKQGYHV--FTAGDGKEALEIFRKYPIMFVILDLMLPGMTGEE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S+VP+I ++     +  L+  D G DD V KP   +++ AR+ AI RR    
Sbjct: 68  ICQAIRRQSRVPVIMLTAKTQEEDVLNGLDIGADDYVTKPFSVKQLYARMEAILRRTGND 127

Query: 123 NNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         +++     +   QGE   L   E +IL  ++ +  K  ++  +   
Sbjct: 128 LKPLAEKFSWNDNDLQIDFGHSEVRKQGEALSLTPSEWKILSAMIKHPKKVFSRENLIEL 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI--DWN 223
           ++G  D    + V+++HI  LRKKL  N      + +   LGY    + N
Sbjct: 188 VFGP-DFDSYDRVIDTHIKNLRKKLETNPKNPVYIKTVYGLGYKFGGEEN 236


>gi|228982217|ref|ZP_04142503.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228777504|gb|EEM25785.1| Two-component response regulator [Bacillus thuringiensis Bt407]
          Length = 226

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLR 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|163741992|ref|ZP_02149381.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161384713|gb|EDQ09093.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 230

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 25/229 (10%)

Query: 2   FVLIDDRALVKD---------GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            +++DD   + D         GY  LF  DG+     N+L+           D+  ++  
Sbjct: 5   ILIVDDDPDILDVTGFAVEKAGYETLFASDGL-----NALKA----SRQQLPDLIVLDIG 55

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L       LE+ R IR  S VP++ ++        +   + G DD + KP   RE++AR+
Sbjct: 56  LPE--MDGLEVCREIRKSSDVPILFLTARDDEIDRIVGLEIGADDYLTKPFSPRELVARI 113

Query: 113 AAIYRRLKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            AI +R   +        E G +++ ++    +  G    L   E R+L  L+A     +
Sbjct: 114 KAILKRSTPTPAPPEAVLEQGSLQLNAERHLCQFGGTPVSLTGSEFRLLATLLARPDHVI 173

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           ++TQ+   +YG ++  V +  ++SHI  +R KL      + + +   +G
Sbjct: 174 SRTQLVDTLYG-YNIHVSDRTIDSHIRNIRAKLAQAGCAEGIVTVHGVG 221


>gi|88856021|ref|ZP_01130683.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814888|gb|EAR24748.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 250

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +   +            R DV  ++  +   G   L 
Sbjct: 27  VVVDDEDSLTDLLSMALRYEGWDVRLASDGPQALATIREFRPDVVVLDIMMP--GLDGLA 84

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA   Q P++ ++   S+   +     G DD V KP    E++AR+ A+ RR  +
Sbjct: 85  VLTRLRADGIQTPILFLTAKDSVDDRIAGLTVGGDDYVTKPFSLEELVARLRALLRRSSI 144

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                SN   E G + +     +    G    L   E  +L YLM N  + +++ QI   
Sbjct: 145 TIAGDSNPVIEVGDLTLDESTYEVARGGTRVELTATEFELLRYLMRNPRRVLSRAQILDR 204

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D     +VVE +IS LRKK+ + LG   + + R +GY +
Sbjct: 205 VW-SYDFGGRASVVEIYISYLRKKI-DVLGPPMIHTVRGVGYML 246


>gi|187934340|ref|YP_001885676.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722493|gb|ACD23714.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 230

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  +  F +   EE L+   +E+V  +   ++       
Sbjct: 5   ILIVDDEKEIRNLLEINLKNEGYHV--FKAKCGEEALKILEKEEVHLMVLDVMMPDMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+   +R    +P++ +S        +    +G DD V KP ++ E+  R+ A++RR   
Sbjct: 63  EVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYF 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +VS++      + +        +      L  RE  IL  L  NRG+  +  +IF
Sbjct: 123 LNTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++         N V  H+S+LR KL   + G   + +   +GY I+
Sbjct: 183 EKVWKEK-YYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIE 229


>gi|172058186|ref|YP_001814646.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171990707|gb|ACB61629.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 220

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +++    L    G  +    +      L  SA  D+  ++  +        
Sbjct: 4   ILIAEDEFDIRELLTELLESSGYHVTSAANGMEALKLHQSATFDLMILDIMMPY--LDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  SQ P+I ++        +  FD G+DD + KP   R +L R+ A+ RR++ 
Sbjct: 62  EVAQQVRKTSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIRRIRT 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++  +     I +F    +  + G    L  +E +IL  L+ N G+ + + Q+   ++G 
Sbjct: 122 NDEEQLSFREITLFPASYNVLISGNAVILTLKEFQILHLLLENPGRVLEREQLIQQLWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   +   +++HI  LRKK+        + + + +GY ++
Sbjct: 181 FDAFGDTRFLDTHIKNLRKKI----NVPYIQTVKGVGYKLE 217


>gi|308177887|ref|YP_003917293.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
           Re117]
 gi|307745350|emb|CBT76322.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
           Re117]
          Length = 226

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   + +    +  +DG       EG  +LE        +  D+  ++  L   G
Sbjct: 5   ILVVDDDEALSEMIGIVLQNDGFDTSFCYEGSGALEAF----RESNPDLVLLDLMLP--G 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +++ ++I A S VP++ ++        +   +SG DD V KP    E++ARV A  R
Sbjct: 59  IDGIKVCKLISAESDVPVVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLR 118

Query: 118 RLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +  +    + G + +   G       +V  L   E  +L  +     +  ++ Q+  A
Sbjct: 119 PNETHAAETLQVGEVTIDVAGHRVTRGTDVVSLTPLEFDLLVTMARKPWQVFSREQLLEA 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           ++G +  A +  +V  H+ +LR K+  +      + + R +GY 
Sbjct: 179 VWG-YRHAADTRLVNVHVQRLRSKIEIDPEKPQIIQTVRGVGYK 221


>gi|291007101|ref|ZP_06565074.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 241

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 101/224 (45%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A     G  + G  +        S    D+  ++  L  +      
Sbjct: 12  LVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQ--DGFS 69

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     VP++ ++   +++  +    +G DD V KP    E++ R+ AI RR++ 
Sbjct: 70  VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVRP 129

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     ++R     + +  +  +    G    L   E ++L YLM N  K V+++QI   
Sbjct: 130 AHLDEPDSRLRYHDLELDEEAYEVRRGGRPVALSPTEFKLLRYLMVNAEKVVSRSQILDR 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  ++   +  VVES+IS LR+K+ +      + + R +GY +
Sbjct: 190 VWN-YEFGGDSRVVESYISYLRRKI-DSTAPPLIHTIRGVGYVL 231


>gi|228959427|ref|ZP_04121117.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800261|gb|EEM47188.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 236

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLH 73

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 74  VLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|229084861|ref|ZP_04217116.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
 gi|228698441|gb|EEL51171.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
          Length = 232

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +          +G  +          ++  +    +  ++  +       +
Sbjct: 6   ILIVDDDADIVQLIALHLKQEGYKVIKAYDGVEAIYMLDTNDIQLVLLDVMMPT--MDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR    +P++ +S   +    +    +G DD + KP    E++ARV A  RR   
Sbjct: 64  EVCRRIREKFNIPVMFLSAKSADIDKVIGLSTGADDYITKPFSMMELVARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V  N+ +   + +    R   + G+   L + E  IL  +  NR +     +I
Sbjct: 124 FNQVPSEVHENKIQIRGLEIDELSRTVMLYGKSINLTKTEYDILHLMAKNRNRVFTLEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 184 YESVWRERAHESN-NTVMVHIARLRNKIEENPKESTIIQNVWGVGYKIE 231


>gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 273

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +        +G  ++   +         S R D   ++  L       LE
Sbjct: 44  LVVDDESTLSELLSMTLRYEGWEVQTAGNGLDAVRAARSFRPDAVILDIMLPD--IDGLE 101

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  + VP++ ++   +++  +    +G DD V KP    E++AR+ ++ RR  +
Sbjct: 102 VLRRLRADATDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRRSGL 161

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 162 VAAKQEPVLAVGDLVLDEDSHEVTRAGQEIRLTATEFELLRYLMRNPRRVLSKAQILDRV 221

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE ++S LR+K+ +      + + R  GY +
Sbjct: 222 WN-YDFGGQANIVELYVSYLRRKI-DAGRNPMIHTVRGAGYVL 262


>gi|331083978|ref|ZP_08333085.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330402340|gb|EGG81910.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 231

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  F   E           D++ ++  +       L
Sbjct: 5   ILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMP--KISGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR     P+I ++   +    +     G DD + KP    E++ARV A  RR K 
Sbjct: 63  ELCKKIRERYNYPIIMLTAKGTEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYKR 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +    E   + +     +  +   +  L   E  IL  L   +G  V+  ++F
Sbjct: 123 YNTGTVKAEEILEHKGLVLNKKTHECFLNERLLSLTPTEFSILVILCEQKGNVVSAEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+     +   N +  HI  LR+K+ +       + +    GY I+
Sbjct: 183 HQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIE 230


>gi|325521888|gb|EGD00601.1| DNA-binding response regulator [Burkholderia sp. TJI49]
          Length = 220

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G        G +++     E       S +  +  ++  L  +     
Sbjct: 3   ILLVEDDEQIGSGVQRGLRHSGFAVDWVRDGETASTALRSTQYGLILLDLGLPKQ--DGS 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R  +   P+I ++   ++   +   D+G DD + KP    E+LAR+  + RR  
Sbjct: 61  TVLARLRQRNDPTPVIIVTARDTIGDRVAGLDAGADDYLVKPFALEELLARIRVVSRRQT 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S     ++G +R+        +  E  P+  RE  ILE L+      V + Q+   +YG
Sbjct: 121 GSVQTVFQSGTLRLDPAQHRVWLGTEEVPVTAREFAILEELIRRPNGIVTREQLEECLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++E VE N V+ HI  LR+KL    G D + + R +GY I
Sbjct: 181 -WNEEVESNTVQVHIHHLRQKL----GTDVIVTVRGIGYRI 216


>gi|228940282|ref|ZP_04102853.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973198|ref|ZP_04133787.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786394|gb|EEM34384.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819408|gb|EEM65462.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 236

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLR 73

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 74  VLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|167767348|ref|ZP_02439401.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1]
 gi|317497415|ref|ZP_07955737.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711323|gb|EDS21902.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1]
 gi|291559353|emb|CBL38153.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316895335|gb|EFV17495.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 223

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +  S++     E           D   ++  L   G+   
Sbjct: 3   ILVVEDEKDLRNIIKKRLVREHYSVDACGDGEEALDYMEMTSYDGVLLDIMLP--GKDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + +R   +  P++ ++    ++  +   D G DD + KP    E+LAR+  + RR  
Sbjct: 61  AVLKEVRQMGNDTPILLLTARDGIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N+ +   + +  D R     G+   L  +E  +LE LM N+   + + QI    + 
Sbjct: 121 QFVTNQLKIADLTLDRDTRIVTRAGKEISLSSKEFMVLECLMRNQNIVMTRQQIEQNAWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV++ +I  LRKK+        + + R  GY +
Sbjct: 181 -YDYEGGSNVIDVYIRYLRKKIDAGYEKKLIHTVRGTGYVM 220


>gi|197116643|ref|YP_002137070.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197086003|gb|ACH37274.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 224

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++   +      E    L      D+  ++  L  K    L
Sbjct: 3   ILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKK--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR +
Sbjct: 61  SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          +R+         + +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 LDRGAEIRFADLRLDLVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+  +     + + R +GY +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDREADKKLIHTVRGVGYIL 220


>gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
 gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
          Length = 224

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 100/224 (44%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  S++     E           D+  ++  L        
Sbjct: 3   ILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLP--KMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +RA+    P++ ++   +++  +   D G DD + KP    E+LAR+ AI RR  
Sbjct: 61  EVVKNLRANKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  +   + V +  +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++ 
Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +    E N+++  I  +RKK+        + +KR LGY +  +
Sbjct: 181 -YAYEGESNIIDVLIKNIRKKIDLGNSKPLIHTKRGLGYVLKED 223


>gi|317050161|ref|YP_004117809.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316951778|gb|ADU71253.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 220

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ DG        G S++ F S +      +SA  D   ++  L  +    L
Sbjct: 3   ILLIEDDRIIGDGLKVGLTKLGFSVDWFVSGDAGFQALASAPWDAVILDLSLPER--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R     VP++ ++   +L   +     G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILRQWRQQGQDVPVLILTARDALDQRVQGLQLGADDYLCKPFALAEVAARLEALIRRRH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +        + GE   L  RE  +LE  + N G+ + ++Q+   +Y 
Sbjct: 121 GQLQPELRHGKVVMSPASHSVLLAGEPVTLKSRELALLELFLRNPGRVLTRSQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE HI  LRKKL    G   + +   +GY++
Sbjct: 180 SWDDDVSSNAVEVHIHHLRKKL----GSQFIRTVHGVGYTL 216


>gi|167588550|ref|ZP_02380938.1| DNA-binding response regulator CreB [Burkholderia ubonensis Bu]
          Length = 233

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +   G DG+                 AR D+  ++  L        
Sbjct: 6   ILVVEDELAIADTIVYALGTDGMQTVHCTLGHAALERLREARFDLVVLDVGLPD--INGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + VP+I ++        +   + G DD V KP   RE+ ARV  I RRL  
Sbjct: 64  EVCRTLRTFTDVPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRLNR 123

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              +                + +DG      G+   L R E  +L  L+ + G+  ++ Q
Sbjct: 124 PAAQPRAQGPGTPDVAQGFELDADGARLAWLGQTLNLTRYEFGLLALLVRHPGRIYSRDQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++        +  V++HI  LR KLR      DP+ + R +GYS+
Sbjct: 184 LMDLVW-RDAIDTTDRTVDTHIKTLRAKLRAIDPARDPIRTHRGMGYSL 231


>gi|119357020|ref|YP_911664.1| two component transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354369|gb|ABL65240.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 222

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 97/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++     +    +      D+  ++  +   G   +
Sbjct: 3   ILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMAILNEYDLMIVDWMIP--GISGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A S VP+I ++   +L+  +   D+G +D + KP    E+LAR+    RR  
Sbjct: 61  EVCRQVRKAGSSVPIIFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G + V         +     L  +E  +LE+L  N+ K   +++I   +  +
Sbjct: 121 PESDAITAGFVTVNPVTHQVFCRDTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVRDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + ++++ +I+ LRKKL      + + + R +GY I
Sbjct: 181 H-FDSDTSIIDVYINFLRKKLDCSGCGNIIQTIRGVGYII 219


>gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
          Length = 236

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G  +    + +    L  S + D   ++  L   G   LE
Sbjct: 5   LVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLP--GMDGLE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RRLK 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +                G IRV     +  V+ +   L  +E  +L Y M  + + + + 
Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   I+  +D A +  +V+ HIS LR K+  +      + + R  GY  
Sbjct: 183 NLLERIW-QYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRF 231


>gi|257469148|ref|ZP_05633242.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
 gi|317063395|ref|ZP_07927880.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689071|gb|EFS25906.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 220

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      E    +      D+  ++  L  K     
Sbjct: 4   ILIVEDEKEIRNILKVYLLTAGYEVTESADGEEAMKIFYEKPFDLVILDIMLPKK--DGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R I+ +S VP+I I+   +    +  F+ G DD + KP  ++  LARV  + +   +
Sbjct: 62  SICREIKEYSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTVLKNKTI 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N  N  E G +++         +G+   L  +E  IL Y + N+   +++ ++ + I+G
Sbjct: 122 VNNSNEIEVGKLKINDVSHSVSKEGKNLDLAPKEYEILMYFIKNKNIALSREKMLTEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     +  ++ HI  LRKK+    G + + + R +GY  +
Sbjct: 182 -YGFVGNDRTIDVHIKNLRKKI----GGEYIKTIRSVGYKFE 218


>gi|47565258|ref|ZP_00236300.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|208742147|ref|YP_002267599.1| two component transcriptional regulator [Bacillus cereus]
 gi|47557612|gb|EAL15938.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 237

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 94/231 (40%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++        +   +    + +    L  + + D+  ++  +  K     
Sbjct: 5   ILIIEDEENIREVCKQYLEREEYEVYTAVNGKEGWELFLTHQPDLIILDLMMPQK--NGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I ++     +  +     G DD + KP    E++ R+  I+RR   
Sbjct: 63  ELCEEIRQKSNVPIIMLTAKGEERNRILGLTIGADDYLTKPFSPHELVLRIQIIFRRGSQ 122

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +           E   ++++   R   V  +   L  +E  +L  +  +  +  +++Q+
Sbjct: 123 VSIQAKDSLLELIEFPDLKIYPKTRYVLVCNKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
              I+G F+     N V   +S+LR+KL      +  + +   +GY  + N
Sbjct: 183 LELIWG-FEYEGVSNTVTVLVSRLREKLEKHTIKNRWIHTIWGIGYRFEPN 232


>gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L    R D+  ++  +       +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   ++G    L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTNTDNDKSILEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|319898655|ref|YP_004158748.1| flagellar transcriptional regulator ftcR [Bartonella clarridgeiae
           73]
 gi|319402619|emb|CBI76164.1| Flagellar transcriptional regulator ftcR [Bartonella clarridgeiae
           73]
          Length = 229

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 124/224 (55%), Positives = 167/224 (74%), Gaps = 4/224 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR LV DGY  LF  +GV+  G    +F EW+ +++  ++S+IEA L+GK E  
Sbjct: 1   MIVVVDDRKLVTDGYATLFSREGVAATGLPPSDFSEWISTASDNEISSIEAILLGKCENQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +ELP+ IR +S  P++ +++   L  T++ F SG+DDV+ KPIH REILAR+ AI RR+ 
Sbjct: 61  IELPKEIRNYSSAPILAMTETNILSHTIELFQSGMDDVLRKPIHVREILARIGAIRRRIG 120

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  N   E GPI VF+DGRDP++ G    LPRRERRILEYL+AN GKRV KTQIF+A
Sbjct: 121 NNIRGINTAIEVGPISVFNDGRDPQINGIELALPRRERRILEYLIANAGKRVNKTQIFNA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +YG+FD+A+EENV+ESHISKLRKKL+ K+G+D +DSKRFLGYS+
Sbjct: 181 VYGIFDDAIEENVIESHISKLRKKLKAKIGYDIIDSKRFLGYSL 224


>gi|224476605|ref|YP_002634211.1| respiratory response regulator receiver SrrA [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222421212|emb|CAL28026.1| staphylococcal respiratory response regulator receiver SrrA
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 240

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 96/233 (41%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +E   + + +E L  +   D + I   L+      +
Sbjct: 4   ILVVDDEERIRRLLKLYLERESFDIE--EAQDGKEALDMALNTDYACILLDLMLPELDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R +   P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR   
Sbjct: 62  EVANRLREYKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTLT 121

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + +           E   + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 122 ATSEQNEPHARDLIEFKHLVIDNDAHRVLADGTQVNLTPKEYELLIFLAKTPNKVFDREQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDWN 223
           +   ++  ++   +   V++H+ +LR+KL   +      + +   +GY  + N
Sbjct: 182 LLKDVW-HYEFYGDLRTVDTHVKRLREKLNRVSSDAAHMIQTVWGVGYKFEVN 233


>gi|148654299|ref|YP_001274504.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566409|gb|ABQ88554.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +A    DG  +    + + E  LQ +       +   L+  G   L
Sbjct: 5   ILVVEDEEPILNLVVAYLKADGFVVH--TARDGESALQQAQIVRPDLVVLDLLLPGIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++        +     G DD + KP   RE++ARV AI RR + 
Sbjct: 63  EICRRLQHDGGPYVLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRRH 122

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +      N       +++    R+ + +G    L  RE  +L  L A  G+   + Q+  
Sbjct: 123 TGAAPAENTLLTFRDLQIDVARREVQRRGVPVTLTAREFDLLYTLAAMPGRVFTREQLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G  D    + VV+ HIS LR+KL  +      + + R +GY  
Sbjct: 183 RVWG-HDFDGVDRVVDVHISLLRRKLEDDPAEPTLIQTVRGVGYKF 227


>gi|163839245|ref|YP_001623650.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952721|gb|ABY22236.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 239

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +             D++ ++  L        
Sbjct: 13  LLVVDDEPNIRELLSTSLRFAGFDVVAAGNGREALTAAEEHNPDLAVLDVMLPD--MDGF 70

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++     +  +     G DD V KP    E++AR+ A+ RR +
Sbjct: 71  TVTRRLRAAGRHFPVLFLTARDDTKDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++         + +  D  +    G    L   E ++L YLM N  + ++K QI   +
Sbjct: 131 PMDDDDAVIRVDDLELDDDAHEVRRSGTSIELSPTEFKLLRYLMLNPNRVLSKAQILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +D   + ++VES+IS LR+K+  +      + +KR +GY +
Sbjct: 191 W-EYDFNGDASIVESYISYLRRKVDTDPDAPALIQTKRGVGYVL 233


>gi|300214110|gb|ADJ78526.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 229

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G  +E  +N  E    L  +    +  ++  +       
Sbjct: 3   ILIVDDDKDIVELLSIYVENEGYEVEKVYNGKEALSKLNMNPDIALMILDVMMPQ--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R +R  SQ+P++ +S        +     G DD V KP +  E++ARV ++ RR +
Sbjct: 61  MEVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAE 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   ++ E GP+ +  D  +   ++G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 HNVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHSNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+ +   G   + +   +GY I+
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227


>gi|254486555|ref|ZP_05099760.1| two component response regulator [Roseobacter sp. GAI101]
 gi|214043424|gb|EEB84062.1| two component response regulator [Roseobacter sp. GAI101]
          Length = 225

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + D  +A   ++G S++  +              D++ ++  L   G   L
Sbjct: 3   ILLAEDDPKIADYIVAGLSENGHSVDHVSDGRDALSYCLYNDCDMAILDRMLP--GMDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA    +P++ ++    ++  ++   +G DD + KP H  E+ AR+ AI RR  
Sbjct: 61  SVLKALRASKKSLPVLFLTALGQVEDRVEGLAAGGDDYLTKPFHFSELTARIDAIVRRKS 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + +    R    QG +  L  +E  ILE LM N G+ V +TQ+   ++
Sbjct: 121 ETTAEPSLTVHDLTLDLLARTATRQGNLIELHNKEFSILEILMRNSGRIVTRTQLLERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F+      VVE+H+S+LR K+        + + R  GYS+
Sbjct: 181 N-FNFEPNTTVVETHLSRLRAKIDKPFDTPLIHTIRNTGYSM 221


>gi|145635435|ref|ZP_01791136.1| transcriptional regulatory protein [Haemophilus influenzae PittAA]
 gi|260582810|ref|ZP_05850596.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|145267309|gb|EDK07312.1| transcriptional regulatory protein [Haemophilus influenzae PittAA]
 gi|260094136|gb|EEW78038.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|301170463|emb|CBW30070.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Haemophilus influenzae 10810]
          Length = 221

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L       L
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLP--KLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           E+ +  R+ H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A+  RR 
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E   +++  + R   +  +   L  RE ++LE  M N+ + ++++ I   +  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKL-S 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 216


>gi|116695189|ref|YP_840765.1| response regulator [Ralstonia eutropha H16]
 gi|113529688|emb|CAJ96035.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 224

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +     A   + G +++          L      D   ++  L       L
Sbjct: 3   ILLVEDEAALAAQVRASLAEAGYAVDVAADGLDACHLGEQEPYDAVILDLGLPR--LDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R  RA    VP++ ++   S    ++  D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  SVLRRWRAAQVGVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELLARIRALIRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + GP+R+        V G    L   E R+L+YLM + G  V+KT +   IY 
Sbjct: 121 GMPAPELQCGPVRMNPRAGKVTVDGTPVALTSHEFRVLDYLMHHPGAIVSKTALTEHIYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LR+KL    G D +++ R  GY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRRKL----GVDVIETVRGQGYRM 216


>gi|310659563|ref|YP_003937284.1| DNA-binding response regulator in two-component system with yedv
           [Clostridium sticklandii DSM 519]
 gi|308826341|emb|CBH22379.1| DNA-binding response regulator in two-component system with YedV
           [Clostridium sticklandii]
          Length = 231

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    S +  E L  +  +    +   ++      +
Sbjct: 6   ILIIEDEYNIARFLQLELEHEGYEVGI--SHDGREGLDKACSDYFDLLILDVMLPSLNGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R  S +P++ ++    +   +   D G DD + KP    E+LAR+  I++R+  
Sbjct: 64  EVLRRLRQKSDMPVVMLTAKDEMNDKILGLDIGADDYMTKPFAIEELLARIRVIFKRMDN 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +++      + +  D      + +   L +RE  +L+Y+M N+   + +  I 
Sbjct: 124 YKASKPQNDSILRIKGVNLDIDRYTVTYKEKNIDLTKREFELLKYMMQNKNLVITREMIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++   + NVV+ +I  LR K+ ++ G   + + R +GY I
Sbjct: 184 AKVWG-YEYMGDTNVVDVYIRYLRSKIDDQFGIKLIHTIRGVGYQI 228


>gi|229177365|ref|ZP_04304748.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228606088|gb|EEK63526.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
          Length = 232

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +  S   D+  ++  +        
Sbjct: 6   ILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMP--KMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLA 123

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + +  + R   V GE   L  +E  IL  L ++  K  +   IF
Sbjct: 124 LNQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             I+         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 QQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTFN 231


>gi|119476400|ref|ZP_01616751.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [marine gamma
           proteobacterium HTCC2143]
 gi|119450264|gb|EAW31499.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [marine gamma
           proteobacterium HTCC2143]
          Length = 228

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
            +LI+D   V D         G S+E     E    L Q S   DV  ++  L       
Sbjct: 3   ILLIEDDISVADYIGKGLRQSGYSVEHCADGEQGLALAQKSEEYDVLVVDRMLPN--MDG 60

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + + +RA  ++ P++ +S    +   +    +G DD + KP    E+LAR+ A+ RR 
Sbjct: 61  LTIIQTLRAADNKSPVLILSALGEVDDRVKGLKAGGDDYLVKPFAFVELLARIEALLRRQ 120

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           K   S  + +   + +          G  F L  RE ++LEYLM + G+ V +T +   +
Sbjct: 121 KSSTSETKLKVADLEMDLLAHKVTRGGGGFNLQPREYKLLEYLMKHAGQVVTRTMLLENV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR+K+        + + R  GY +
Sbjct: 181 W-EYHFDPQTNVIDVHISRLRQKIDKDFDQQLLSTVRGAGYML 222


>gi|110833027|ref|YP_691886.1| phosphate regulon transcriptional regulatory protein phoB
           [Alcanivorax borkumensis SK2]
 gi|110646138|emb|CAL15614.1| Phosphate regulon transcriptional regulatory protein phoB
           [Alcanivorax borkumensis SK2]
          Length = 234

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +    + +    +    R D+  ++  L       +
Sbjct: 6   ILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSV--TGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     ++VP+I ++        +   D G DD + KP   RE+++R+ A+ RR
Sbjct: 64  ELARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLRR 123

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +    E   + +               +   E R+LE+ M+++ +  ++TQ+   
Sbjct: 124 ASSVAAEKAIEVEGLCLDPVSHRISANDSPVDMGPTEYRLLEFFMSHQERAYSRTQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  ++ HI +LRK L        + + R  GY  
Sbjct: 184 VWGA-NVYVEDRTIDVHIRRLRKALAPFGYDRFIQTVRGTGYRF 226


>gi|20807256|ref|NP_622427.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20515763|gb|AAM24031.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 224

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 107/222 (48%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVL 61
           ++I+D   ++D       ++G  +    + +    L +  ++  +  ++  L        
Sbjct: 6   LVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPD--ISGW 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S+VP++ I+        L  F+ G DD V KP   RE++ARV AI  R   
Sbjct: 64  SLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYG 123

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S +  + E   I +    R+  V G+   L  +E  +L+ L+ N+GK V++ +  + ++G
Sbjct: 124 SQDDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LR+KL  K   + + +   +GY ++
Sbjct: 184 -YDFYGDLRTVDTHIKQLREKLGEK--RNLIKTVWGIGYKLE 222


>gi|291541902|emb|CBL15012.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 227

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +G  +E   +++  + ++   +ED   I   ++       
Sbjct: 4   ILVVDDEARIRQIIRKYAEFEGFEVE--EAVDGMQAIEICRKEDFDLIIMDVMMPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR   + P+I +S        +  F+ G DD V KP   +E++ RV A+ +R + 
Sbjct: 62  SACREIRKFKKTPIIMLSARGEEYDKIHGFELGSDDYVVKPFSPKELMMRVNAVIKRSQG 121

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + N             + V    R   + G+   +  +E  +  Y++ N+G  + + ++ 
Sbjct: 122 AQNEENVKKDVFTYEGLSVDFSARIVTIDGKRIEMTPKEYELFFYMVKNKGLALTREKLI 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++G +D   +E  +++HI  LRK L        + + R +GY  +
Sbjct: 182 SEVWG-YDFFGDERTLDTHIKLLRKSLGEY--SRCIVTLRGVGYRFE 225


>gi|253573667|ref|ZP_04851010.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847195|gb|EES75200.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 234

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 92/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G  +    + +    L+ + +++V  +   ++  G   +
Sbjct: 5   ILIVDDDEKIAKLIEIYLMNEGYHV--LKAEDGLRALEITEQDEVDLVILDVMLPGLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   IR     P++ +S        +    +G DD + KP +  E++ARV ++ RR   
Sbjct: 63  SVCMKIRESKTTPILMLSAKDGDMDKITGLMTGADDYMVKPFNPLELVARVKSLLRRSSY 122

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                       ++  +   + +  +     V G    L   E  IL  L ++ G+    
Sbjct: 123 TAQPPSSTQSSQDHIIKIASLAIDKETHTATVDGNPLKLTPIEFGILHLLASHPGRVFGS 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            +IF  I+         N V  HIS+LR KL  +  G   + +   +GY ++
Sbjct: 183 EEIFELIW-KDKYLDSSNSVTVHISRLRDKLEKEMDGEKLIRTVWGVGYKLE 233


>gi|227518520|ref|ZP_03948569.1| response regulator [Enterococcus faecalis TX0104]
 gi|227553045|ref|ZP_03983094.1| response regulator [Enterococcus faecalis HH22]
 gi|293387675|ref|ZP_06632220.1| DNA-binding response regulator PhoP [Enterococcus faecalis S613]
 gi|307268529|ref|ZP_07549902.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307279075|ref|ZP_07560133.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|312904010|ref|ZP_07763178.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312907240|ref|ZP_07766231.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909858|ref|ZP_07768706.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312952257|ref|ZP_07771132.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|227074002|gb|EEI11965.1| response regulator [Enterococcus faecalis TX0104]
 gi|227177832|gb|EEI58804.1| response regulator [Enterococcus faecalis HH22]
 gi|291082864|gb|EFE19827.1| DNA-binding response regulator PhoP [Enterococcus faecalis S613]
 gi|306504200|gb|EFM73412.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306515125|gb|EFM83667.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310626268|gb|EFQ09551.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310629641|gb|EFQ12924.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310632486|gb|EFQ15769.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311289816|gb|EFQ68372.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|315034073|gb|EFT46005.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315036741|gb|EFT48673.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145567|gb|EFT89583.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147740|gb|EFT91756.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151441|gb|EFT95457.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315153220|gb|EFT97236.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315157827|gb|EFU01844.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315165474|gb|EFU09491.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315174346|gb|EFU18363.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315578357|gb|EFU90548.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315579871|gb|EFU92062.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
          Length = 235

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 100/233 (42%), Gaps = 20/233 (8%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEF--EEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           I+D   V +     F ++G      +  +     +L S  + D+  ++  L       + 
Sbjct: 2   IEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPS--MDGMA 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++RR +V
Sbjct: 60  VCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRRAEV 119

Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRV 168
           +    +            T   ++ +  R+  +  ++   L  +E  +L  L     +  
Sbjct: 120 AEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPRQVF 179

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 180 SREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 230


>gi|301310264|ref|ZP_07216203.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
 gi|300831838|gb|EFK62469.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
          Length = 225

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  +  + + +     + + + D   +   +I      L
Sbjct: 4   ILLVEDEVNIASFIERGLREFGHEV--YVAYDGAAGWELTQKNDFQLLILDIIMPKMNGL 61

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L +  R       P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 62  QLCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRS 121

Query: 120 KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +       G + +          G+V  L  +E R+LEY + N+G  +++  +   +
Sbjct: 122 GNESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   D     NVV+ +++ LR K+        + +   +GY ++
Sbjct: 182 WDK-DFDTNTNVVDVYVNYLRTKIDKDFEPKLIRTVVGVGYMME 224


>gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 231

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++IDD   + D         G ++    +   +E ++ +    D+  ++  +       
Sbjct: 4   ILIIDDEKEIADLLKDSLERKGNTV--LTAYNGKEGIEKAKEMPDLIVLDIMMPD--IDG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR     P++ +S   S    +  F  G DD V KP   +E+LAR+ A  RR K
Sbjct: 60  YEVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREK 119

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +                I +    R+  V+G    L ++E  +LE L  + G+  +K Q
Sbjct: 120 RAILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           I+  ++G FD   +   V  HI  +R K+ N     + + +   +GY  +
Sbjct: 180 IYEKVWG-FDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWE 228


>gi|325685239|gb|EGD27357.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 242

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 98/233 (42%), Gaps = 19/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +E   + + EE ++     +   +   L+   +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVE--TAYDGEEAVEKVEEYNPDLMILDLMLPKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++        +   + G DD V KP  +RE++ARV A  R    
Sbjct: 63  EVAREVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122

Query: 120 -------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                        +  +N  + G + +  D    E  GE   L  RE  +L Y+  +  +
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
            + +  +   ++G +D   +   V+  + +LR+K+ +      +  ++R +GY
Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234


>gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G  +   +  +    +  +   D+  ++  +        
Sbjct: 6   ILIADDEEEIADLIAIHLEKEGYHVIKASDGQEAVRIVETQSIDLLVLDIMMP--KMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRRIREQHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLRRFMK 123

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N          E G + +  D R   + G+   L  +E  IL  L ++  K      IF
Sbjct: 124 LNQPKADIKTSLEYGGLVITPDQRTVTLYGKTIDLTPKEFDILYLLASHPKKVFNVENIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++G        N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 QQVWGEAYFEGG-NTVMVHIRTLRKKLEEDKRKDKWIKTVWGVGYTFN 230


>gi|227496786|ref|ZP_03927057.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833702|gb|EEH66085.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 234

 Score =  231 bits (590), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSARE------DVSAIEAFLI 54
            +L++D    ++        DG   +E  +     E  + + R       D+  ++  L 
Sbjct: 4   ILLVEDEENYREPLAFNLRRDGYDVVEAEDGAVAVELFEEAGRPGGGEPIDLVLLDLMLP 63

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                  E+ R IR  S VP+I ++   S    +   + G DD V KP  +RE++ARV A
Sbjct: 64  R--LSGTEVCRRIRRSSNVPVIMLTAKDSEVDKIVGLEIGADDYVTKPYSYRELVARVHA 121

Query: 115 IYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + RR +    +    E G + +  +  +  V GE   +P RE  +LE  + N  + + + 
Sbjct: 122 VLRRTREEEPAEPVLEAGRVSMDVERHEVRVDGEPIAMPLREFELLELFLRNADRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           QI   ++G      +   ++ H+ ++R K+ R       + + R LGY +
Sbjct: 182 QIIDRVWGAG-YVGDTKTLDVHVKRIRAKIEREPSDPTLLVTVRGLGYKL 230


>gi|261408624|ref|YP_003244865.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329927373|ref|ZP_08281632.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|261285087|gb|ACX67058.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328938512|gb|EGG34897.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 224

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +     + + +E L       V  +   ++       
Sbjct: 4   ILVADDDANIRELVCLFLRNDGFT--TVEAADGKEALSVYGSTPVDLVVLDIMMPMMDGW 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R +
Sbjct: 62  TLCKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYR 121

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S    + G + +           E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 122 IGSTQTIQFGNVILDRQTYKVSSGPETLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 182 I-DYAGDDRTVDVHIKRLRERFATTPDF-RIETVRGLGYRLEV 222


>gi|77920671|ref|YP_358486.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77546754|gb|ABA90316.1| two component transcriptional regulator, winged helix family
           [Pelobacter carbinolicus DSM 2380]
          Length = 223

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 94/220 (42%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V         ++  +++     E   +L  +   D+  ++  L  K    LE
Sbjct: 4   LVVEDEKKVASFIKRGLEEEDFTVDVAFDGEEGLYLAENNPYDIILMDLMLPKK--DGLE 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           + + +R      P++ ++   +++  +   DSG DD + KP    E+LARV A+ RR  K
Sbjct: 62  VIKELRTKDVTTPVLCLTAKDAVEDIVSGLDSGSDDYLTKPFAFSELLARVKALLRRSAK 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     +R+           +   L  +E  +LEY M N  + + +  I   ++  
Sbjct: 122 DRGAEIYFADLRLDPVSHKVWRSDQEIDLTAKEYALLEYFMRNPNQVLTRAMIAEHVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      N+++ +++ LRKK+        + + R +GY +
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKVDRDFDKKLIHTVRGVGYVL 220


>gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM
           273]
 gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family
           [Chlorobium luteolum DSM 273]
          Length = 232

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++     E    L  S   D+  I+  L       +
Sbjct: 3   LLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLP--KLSGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A S VP+I ++   +L   +    +G DD V KP    E+LAR+ A  R+  
Sbjct: 61  EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +  +            L  +E  +LEYL+ N  +   +++I   ++ +
Sbjct: 121 PTTGPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + +V++ +++ LR+KL        + + R +GY I
Sbjct: 181 H-FDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVI 219


>gi|330889414|gb|EGH22075.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 225

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 108/222 (48%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   +     +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAGEALYQVTQFNHDLAVIDLGLPGIG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R   +  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGYLFN 221


>gi|330503679|ref|YP_004380548.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328917965|gb|AEB58796.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 222

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D   A     G +++         +  +S   D+  ++  L   G+  L
Sbjct: 3   LLLVEDHVPLADELTASLARQGYAVDWLADGRDAAYQGASEPYDLIILDLGLP--GKPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  RA     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQEWRAGGLATPVLVLTARGSWAERIEGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  + E   +++    +     GE   L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPQLEAAGLQLDESRQCVTSGGEAIDLTAAEFRLLRYFMLHPGQILSKSHLADHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   + NV+E H+++LR KL    G + ++++R  GY  
Sbjct: 181 DG-ETERDSNVIEVHVNRLRGKL----GRNVIETRRGQGYRF 217


>gi|294790736|ref|ZP_06755894.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
 gi|294458633|gb|EFG26986.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
          Length = 241

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 89/228 (39%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +            + +S + D+  ++  L       LE
Sbjct: 15  LVVEDEPTLATAIGQRLASEGWNTRITGDGASAVHIAASYKPDLILMDIMLPV--MDGLE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR++ +
Sbjct: 73  ATKRITAARPVPVLMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVERA 132

Query: 123 ---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E   + +    R   + G+   L   E  +L  L     + + + ++
Sbjct: 133 KVIAKNSENEKVLEFNGLTIDPAQRLVLLNGQEVHLTPTEFDLLATLARKPKQVLTREKL 192

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G + + +   +GY+ +
Sbjct: 193 LEEVWDWVDASG-TRTVDSHVKALRHKL----GSEMIRTVHGVGYAFE 235


>gi|89893823|ref|YP_517310.1| hypothetical protein DSY1077 [Desulfitobacterium hafniense Y51]
 gi|89333271|dbj|BAE82866.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   ++        D+G              L  S R D+  ++  +       
Sbjct: 5   IILIVEDEPRMQTIIADYLEDEGYQTLAAAHGIEALELFKSKRVDLILLDIMMP--KLDG 62

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L + R IR   S+V +I ++   +    L  ++ G DD + KP   + ++A++ A+ +R 
Sbjct: 63  LSVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKRA 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +    E G + +        + GE   L  +E  +L  L+ N+ + + +  + +
Sbjct: 123 DAGAQETPEIYEIGRLAINQLSHTVTLAGEPIELTPKEFELLVCLVRNKQRVLTREMMMN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G ++   +   V+SHI +LR+KL  K     + + R  GY ++
Sbjct: 183 LVWG-YEYYGDLRNVDSHIKRLRQKL--KSEGRLITTVRGSGYKLE 225


>gi|289435296|ref|YP_003465168.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171540|emb|CBH28086.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 238

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 98/231 (42%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E   + + +E L  +   +   I   L+  G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIE--EASDGDEALDMALNNNYEVILLDLMMPGKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R +   P++ ++        +  F+ G DD + KP   RE++ RV A+ RR K +
Sbjct: 66  VCRELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQT 125

Query: 123 NNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +                +++ ++     V G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEEGASGAPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLFDVSEDAARMIVTVWGLGYKFEV 235


>gi|315604878|ref|ZP_07879936.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313417|gb|EFU61476.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 227

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 88/221 (39%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  ++G  +                  D+  ++  L   G    
Sbjct: 5   ILVVDDDLALAEMIGIVLQNEGFRVVFCGDGSQALAQFQEHHPDLVLLDVMLP--GMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR  S VP++ ++        +   ++G DD V KP   +E++ARV A  R    
Sbjct: 63  DVCRAIRHVSDVPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRDD 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++       + +   G   +  G V  L   E  +L  L     K  ++ ++   ++G
Sbjct: 123 NQADEGITLQDLSIDVAGHVVQRDGHVIALTPLEFDLLATLARAPWKVFSREELLEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            +  A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 -YRHAADTRLVNVHVQRLRSKIERDPEKPELVVTVRGVGYR 222


>gi|229158472|ref|ZP_04286533.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228624991|gb|EEK81757.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
          Length = 232

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D        +G  +    + + EE +     + +  +   ++       
Sbjct: 6   ILIADDEAEIADLIEIHLEKEGYHV--LKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N           E G + +  + R   V GE   L  +E  IL  L ++  K      I
Sbjct: 124 LNQPKVVDNKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-ADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231


>gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
 gi|151280902|gb|ABR89312.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
          Length = 223

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +       + G  ++          L      ++  ++  L        
Sbjct: 3   ILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPL--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R     P++ ++    ++  +   + G DD + KP    E++ARV  + RR  V
Sbjct: 61  QLLRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGPV 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E   +++    R     GE   L  +E  +L  L   RG+ ++++ I S ++ +
Sbjct: 121 RESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR KL +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVLE 220


>gi|148380236|ref|YP_001254777.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932234|ref|YP_001384540.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936748|ref|YP_001388056.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289720|emb|CAL83825.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928278|gb|ABS33778.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932662|gb|ABS38161.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 235

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G  + + F+ LE  E  Q      +  ++  +       
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAMEKFQ-GENYHMVIMDIMMPV--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R IR  S+VP+I +S        +     G DD + KP    E++ARV    RR  
Sbjct: 63  IESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAI 122

Query: 121 VSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N           E G ++   +       G+   L  +E +IL+    N  +   K Q
Sbjct: 123 YYNETKSIKENKIHEYGDVKFDINNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I+ +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 183 IYDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|157371792|ref|YP_001479781.1| DNA-binding transcriptional regulator BaeR [Serratia proteamaculans
           568]
 gi|157323556|gb|ABV42653.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 239

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +     +         +    +  ++  L   G   L
Sbjct: 11  IMIVEDEPKLGQLLVDYLQAAGYATHWLTNGSEVVPAVHAHSPALILLDLMLP--GSDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + R +R  + +P++ ++        L   + G DD + KP   RE++ARV  I RR  +
Sbjct: 69  TVCRELRRFTDIPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYR 128

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N  E   + +         QG++  L   E R+L+ L +  G   ++ Q+ + +Y  
Sbjct: 129 PLDNTQEETQLHIDEPRFQASYQGQMLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDD 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +   V +  ++SHI  LR+KL    G    + S   +GY  +
Sbjct: 189 Y-RVVTDRTIDSHIKNLRRKLELIDGEKSFIRSVYGVGYRWE 229


>gi|328944489|ref|ZP_08241951.1| phosphate regulon response regulator [Atopobium vaginae DSM 15829]
 gi|327491073|gb|EGF22850.1| phosphate regulon response regulator [Atopobium vaginae DSM 15829]
          Length = 246

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++  I    +    ++ F+          +    +  ++  L        
Sbjct: 15  IYVVEDDVSIQEIEIIALKNSNYDVQAFSCAADFFAALKTRTPQLILLDIMLPDA--DGN 72

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +R     S +P+I I+   +    +   D+G DD + KP    E+L+R+ A+ RR
Sbjct: 73  TITRTLRSNAQWSHIPIIMITAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRR 132

Query: 119 LKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +          +    G I +        V      L  +E  +L YLM + G    + 
Sbjct: 133 AQTPAQMPADKYSVCRVGAIMLDPARHYVCVHDTPVNLTHKEYDLLHYLMLHEGLVFTRE 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  A++G FD   E   V+ HI  LR+KL +      V + R +GY +
Sbjct: 193 VLMQAVWG-FDFEGESRTVDMHIKTLRQKLGDASC--YVHTVRGVGYCV 238


>gi|206967797|ref|ZP_03228753.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|206736717|gb|EDZ53864.1| regulatory protein VanR [Bacillus cereus AH1134]
          Length = 232

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +  S   D+  ++  +        
Sbjct: 6   ILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMP--KMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRTKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + +  + R   V GE   L  +E  IL  L ++  K  +   IF
Sbjct: 124 LNQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             I+         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 QQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTFN 231


>gi|257069090|ref|YP_003155345.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256559908|gb|ACU85755.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 279

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 93/229 (40%), Gaps = 17/229 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V+I+D   +          +G  +             +  R DV  ++  L   G   LE
Sbjct: 18  VVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLP--GFDGLE 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R I+A   VP++ ++        L     G DD + KP   RE++AR+ A+ RR++ +
Sbjct: 76  VCRRIQADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVRRA 135

Query: 123 ----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         + G + +   GR     G    L   E  +L  L    G  + + Q
Sbjct: 136 APPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTREQ 195

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + ++   D A     V+SH+  LR+KL    G D V +   +GY+++
Sbjct: 196 LLADVWDWVD-ATGTRTVDSHVKALRRKL----GSDLVRTVHGVGYALE 239


>gi|167745694|ref|ZP_02417821.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
 gi|317472712|ref|ZP_07932026.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167655006|gb|EDR99135.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
 gi|316899790|gb|EFV21790.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 225

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD + ++          G  + E  +  E  +   S+   D+  ++  +       
Sbjct: 6   ILVVDDESRMRKLVKDFLNRAGYQVLEAGDGEEAVDVFFSTKGIDLLVLDVMMPR--MDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR  S+VP+I ++        L  FD GVD+ ++KP   + ++AR+ AI RR +
Sbjct: 64  WEVVREIRKVSEVPIIMLTAKDQENDELQGFDLGVDEYISKPFSPKILVARIEAILRRTR 123

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G I +        +  +   L  +E  +L Y M N G+ + +  I + ++ 
Sbjct: 124 QQDGEVLKAGGIVLDEAAHMVTIDDKSIDLSFKEFELLSYFMKNEGRALTRENILNQVWN 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR K+ +K     + +   +GY  + 
Sbjct: 184 -YDYFGDARTIDTHVKKLRNKMGSKGA--YIRTIWGMGYKFEV 223


>gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 246

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 105/228 (46%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD A ++          G  +    + + EE L++  +A  D+  ++  +      
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYEV--VTAADGEEALETFRTAEPDLVVLDVMMP--KLD 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+
Sbjct: 68  GYGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRV 127

Query: 120 K-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +        S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++
Sbjct: 128 EKNGVPGIPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSE 187

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           I   ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 188 ILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 235


>gi|149378109|ref|ZP_01895829.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
 gi|149357594|gb|EDM46096.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
          Length = 226

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V +  +    +    ++     +    + +S   D+  ++  L   G   L 
Sbjct: 4   LVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRMLP--GMDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA  +QVP++ +S    +   ++    G DD + KP    E+LAR+ ++ RR + 
Sbjct: 62  IIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNRQ 121

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S           + +    R  +  G    +  RE R+LEYLM N G+ V +T +   ++
Sbjct: 122 SAETETVLRVADLEMDLLARTVKRAGHNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+  +     + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHISRLRAKIDKEFETPLLQTIRGAGYML 222


>gi|148558321|ref|YP_001258005.1| response regulator receiver [Brucella ovis ATCC 25840]
 gi|189036229|sp|A5VW00|FTCR_BRUO2 RecName: Full=Flagellar transcriptional regulator ftcR
 gi|148369606|gb|ABQ62478.1| response regulator receiver:Transcriptional regulatory protein, C
           terminal domain [Brucella ovis ATCC 25840]
          Length = 227

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 133/225 (59%), Positives = 166/225 (73%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F  GVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQFGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FP PRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPFPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|152989182|ref|YP_001345963.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PA7]
 gi|150964340|gb|ABR86365.1| two-component response regulator CreB [Pseudomonas aeruginosa PA7]
          Length = 229

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G +            LQ     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALQAEGFATTWVPLAGEALALQERQPADLLILDVGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                E     GP +V ++       G    L R E R+L+ L+    +  ++ Q+  A+
Sbjct: 122 RPAPLEEAALHGPFQVDAERVRIHYHGAPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            G+  EA  E  ++SHI  LR KLR      + + + R LGYS
Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNARGEAIQTHRGLGYS 223


>gi|332975597|gb|EGK12487.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 234

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 96/229 (41%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +   +  E    +    + D+  ++  L       +
Sbjct: 4   ILLVEDEERLGQLISEQLRLEGHRVTVASDGEEGYRMWKQEQPDLVILDWMLPR--MDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++        +   + G DD + KP    E+ ARV A+ RR   
Sbjct: 62  EVCRKIRETSIVPVMMLTAKGDEMEKVWGLEVGADDYMTKPFSTWELKARVRALLRRAAF 121

Query: 122 SNNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              R+E            I++  + R+ +++ ++  L  +E  +LE  ++  G+  ++  
Sbjct: 122 GRERSEFASEGGVLSFPFIQLDREKREVKLEDQLLVLTPKEYELLELFLSYPGRVFSRAY 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   I+   D    +  V++ IS+LRKK    L    +++    GY  +
Sbjct: 182 LMDRIW-EADYLENDRTVDTQISRLRKKFG--LYGKAIETVWGTGYKFN 227


>gi|310827284|ref|YP_003959641.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739018|gb|ADO36678.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 224

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +           G  +++ FN  E  +   ++    +  ++  L       
Sbjct: 4   ILIVEDDKKISRIIELQLNHAGFETVKAFNGREAIDVFNNTPDIGLVLLDIMLPQF--NG 61

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ + IR  S ++P+I ++        ++  + G DD + KP    E+LAR+ A  R+ 
Sbjct: 62  YEVLKYIRERSPELPVIFLTAKDDTGDVVNGLNLGADDYITKPFIFDELLARIKANLRKK 121

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 NR     + +  D       GE   L + E  +L YL+ N G   ++ QI   +
Sbjct: 122 AAVSPRNRVAFEDLSIDLDTFMVSRGGESIELSKTEFDLLHYLVLNHGLVQSREQILDQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G FD    +N+V+ +I  LR K+        + + R  GY I
Sbjct: 182 WG-FDYFGNDNIVDVYIKYLRDKIDKPFEKKLIQTVRGRGYVI 223


>gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 241

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++G  +   +  +     +++ R+D   I   L+  G    
Sbjct: 5   LLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQI--GYETALRQDFDLILLDLMLPGMNGF 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+   +R+   + P+I ++   + +  +    SG DD + KP    E+LARVAA+ RR  
Sbjct: 63  EIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRST 122

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +  N++   G + ++ +  +  + GE   L  +E  +L YL    G  + +
Sbjct: 123 GKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             + +A++G FD    +  V+ H+S LRKKL        +DS R +GY +  N
Sbjct: 183 DDLMNAVWG-FDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKLVVN 234


>gi|228992299|ref|ZP_04152230.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228998353|ref|ZP_04157945.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229005836|ref|ZP_04163531.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228755416|gb|EEM04766.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228761398|gb|EEM10352.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228767324|gb|EEM15956.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 225

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +    + + ++ L+  A   +  I   ++        
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEV--IEAEDGKQALELFAEHTIDLIMLDIMLPEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R   +
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENALSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFE 224


>gi|326792833|ref|YP_004310654.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543597|gb|ADZ85456.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 229

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 11/225 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +I+D   + D        DG  +  + + + EE L     +D+  +   ++   +  LE+
Sbjct: 6   IIEDEKAISDIIKYNLEKDGYEV--YTAYDGEEGLNLIKTKDLDLVLLDIMLPKKDGLEI 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            + IR   +VP+I IS        +   + G DD V KP   RE++ARV A  RR     
Sbjct: 64  CKEIRQTKEVPIIIISAKADEIDKVLALELGADDYVTKPFGMREVMARVKARLRRKMTEG 123

Query: 124 NRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N+AE          + +     +     E   L  RE  +L++L   +G+  ++ ++   
Sbjct: 124 NKAEANEDNLVEDNLCMDLKKYEVSKNNEAIDLTLREFELLKFLWQAKGQVFSREELLEK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           ++G ++   +   V+  I +LR+K+ +       V +KR +GY  
Sbjct: 184 VWG-YEYYGDVRTVDVTIRRLREKIEDDASKAAYVLTKRGVGYYF 227


>gi|229550855|ref|ZP_04439580.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315805|gb|EEN81778.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 269

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   ++ ++  E    L +    D++ +   ++      
Sbjct: 44  ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVT--NPDIALMILDIMMPNMSG 101

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 102 MDVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 161

Query: 121 -----VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 162 NEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIF 221

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 222 ERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 268


>gi|182436017|ref|YP_001823736.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776641|ref|ZP_08235906.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464533|dbj|BAG19053.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656974|gb|EGE41820.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDPTIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|168185772|ref|ZP_02620407.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
 gi|169296218|gb|EDS78351.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
          Length = 223

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    +  + G  +E  +  +    ++   +     I   ++       
Sbjct: 5   ILVVEDDFDIQEIISEVLKNSGYIVEVAS--DGLSGIEMFEKYKFDLIILDIMLPKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +  IIR  S VP+I ++        +  F+  +DD + KP     ++ RV A+ RR   
Sbjct: 63  VVCEIIRKKSDVPIIMLTALGEEDDEIKGFELKIDDYITKPFSINLLIKRVEAVLRRYSN 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K S        I+++       V      L  +E +ILE LM N G+   ++ +   
Sbjct: 123 NPSKNSEATLVFEEIKIYPSNYKTLVNENEIELTVKEFQILESLMKNPGQVFTRSSLLDM 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+G +D   +  V+++HI  LR+KL      D + + R +GY I+
Sbjct: 183 IWG-YDYFGDTRVIDTHIKNLRQKL----NVDYIKTIRGVGYKIE 222


>gi|120556645|ref|YP_960996.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120326494|gb|ABM20809.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 226

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V +  +    +    ++     +    + +S   D+  ++  L   G   L 
Sbjct: 4   LVIEDDRDVANYLLKGLRESDFVVDHAADGKEGMMMAASEEYDIMIVDRMLP--GMDGLS 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA     P++ +S    +   ++    G DD + KP    E+LAR+ ++ RR + 
Sbjct: 62  IIKTVRATGNQTPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLIRRNRQ 121

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +       +   + +    R  +  G+   +  RE R+LEYLM N G+ V +T +   ++
Sbjct: 122 AAETETVLKVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+  +     + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHISRLRAKIDKEFDTPLLQTVRGAGYML 222


>gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 242

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L++  + +   +   ++       
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDV--VTAADGEEALETFRQTNPDLVVLDVMMPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGAPGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|126699228|ref|YP_001088125.1| two-component response regulator [Clostridium difficile 630]
 gi|255100752|ref|ZP_05329729.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306636|ref|ZP_05350807.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115250665|emb|CAJ68489.1| Two-component response regulator [Clostridium difficile]
          Length = 233

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G ++  F + +       S   D++ ++  L        
Sbjct: 5   ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E++ARV    RR   
Sbjct: 63  HICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMR 122

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            NN  E             + +  +     + G+   L   E  IL YL  ++GK V   
Sbjct: 123 YNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++F A++G        N V +HI +LR+K+         + +   +GY+I+
Sbjct: 183 ELFEAVWGEK-YLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIE 232


>gi|75762016|ref|ZP_00741930.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74490502|gb|EAO53804.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 207

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 92/204 (45%), Gaps = 17/204 (8%)

Query: 32  LEFEEWLQ--SSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTL 88
           ++ E  LQ  ++ R D+  ++  L       +E+ + +R      P++ ++        +
Sbjct: 1   MDGEMALQKATTERPDLIILDLMLP--KMDGMEVCKELRLQRVMTPILMLTAKDDEFDKV 58

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR----------AETGPIRVFSDGR 138
              + G DD + KP   RE++ARV AI RR K+                   +++  +  
Sbjct: 59  LGLELGADDYMTKPFSPREVVARVKAILRRTKLQQEEQVAEAPDEDSITIAELKILPEFY 118

Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198
           +   QG    L  +E  +L YL  N+ + + + Q+ SA++  +D A +  +V+ HIS LR
Sbjct: 119 EAYFQGRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLR 177

Query: 199 KKLRNKLGFD-PVDSKRFLGYSID 221
            K+         + + R LGY ++
Sbjct: 178 DKIEQNTKKPTYIKTIRGLGYKLE 201


>gi|254479525|ref|ZP_05092845.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034545|gb|EEB75299.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 223

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++I+D   ++D       ++G  +    N  E  +    +    +  ++  L        
Sbjct: 5   LVIEDEEGMRDILKTYLENNGYQVLTAKNGKEGLDLFNENKDIKIILLDIMLPD--ISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S+VP++ I+        L  F+ G DD V KP   RE++ARV AI  R   
Sbjct: 63  SLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYG 122

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S    + E   I +    R+  V G+   L  +E  +L+ L+ N+GK V++ +  + ++G
Sbjct: 123 SQEDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LR+KL  K   + + +   +GY ++
Sbjct: 183 -YDFYGDLRTVDTHIKQLREKLGEK--RNLIKTVWGIGYKLE 221


>gi|16130921|ref|NP_417497.1| quorum sensing DNA-binding response regulator in two-component
           regulatory system with QseC [Escherichia coli str. K-12
           substr. MG1655]
 gi|89109795|ref|AP_003575.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K-12 substr. W3110]
 gi|170082568|ref|YP_001731888.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K-12 substr. DH10B]
 gi|238902138|ref|YP_002927934.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli BW2952]
 gi|1723888|sp|P52076|QSEB_ECOLI RecName: Full=Transcriptional regulatory protein qseB
 gi|882555|gb|AAA69193.1| ORF_o219 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789402|gb|AAC76061.1| quorum sensing DNA-binding response regulator in two-component
           regulatory system with QseC [Escherichia coli str. K-12
           substr. MG1655]
 gi|85675828|dbj|BAE77081.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K12 substr. W3110]
 gi|169890403|gb|ACB04110.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K-12 substr. DH10B]
 gi|238860870|gb|ACR62868.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli BW2952]
 gi|260447939|gb|ACX38361.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|315137618|dbj|BAJ44777.1| DNA-binding transcriptional regulator QseB [Escherichia coli DH1]
          Length = 219

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ +++  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|313904165|ref|ZP_07837544.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470967|gb|EFR66290.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 231

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD A ++         +   +    + + EE L     + +V+ I   ++      
Sbjct: 6   ILVVDDEARMRKLVRDFLIRNDFDV--VEAGDGEEALNVFYEDKNVALIILDVMMPKMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R IR  S+VP+I ++     +  L  F+ GVD+ + KP   + ++ARV AI RR  
Sbjct: 64  WQVCREIRKESKVPIIMLTARSEERDELLGFELGVDEYIAKPFSPKILVARVEAILRRTN 123

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++     G + +        V G+   L  +E  +L Y + N G  +++ +I + ++
Sbjct: 124 QISADETLSIGGVTINKSAHLASVDGKTMDLSYKEFELLTYFLENAGIALSREKILNNVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +D   +   +++H+ KLR K+  K   + + +   +GY  + 
Sbjct: 184 N-YDYFGDARTIDTHVKKLRSKMGEKG--NYIRTIWGMGYKFEV 224


>gi|255975713|ref|ZP_05426299.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256762632|ref|ZP_05503212.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256959112|ref|ZP_05563283.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256964992|ref|ZP_05569163.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257079144|ref|ZP_05573505.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082420|ref|ZP_05576781.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|257085052|ref|ZP_05579413.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257090017|ref|ZP_05584378.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257416223|ref|ZP_05593217.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|294781585|ref|ZP_06746921.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|307269514|ref|ZP_07550853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273088|ref|ZP_07554334.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307277931|ref|ZP_07559015.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307289241|ref|ZP_07569197.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|312901893|ref|ZP_07761158.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903451|ref|ZP_07762631.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|255968585|gb|EET99207.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256683883|gb|EEU23578.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256949608|gb|EEU66240.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256955488|gb|EEU72120.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256987174|gb|EEU74476.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990450|gb|EEU77752.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|256993082|gb|EEU80384.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256998829|gb|EEU85349.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257158051|gb|EEU88011.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|294451281|gb|EFG19747.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|306499950|gb|EFM69311.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306505328|gb|EFM74514.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306510073|gb|EFM79097.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306514134|gb|EFM82710.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310633327|gb|EFQ16610.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311291086|gb|EFQ69642.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315037115|gb|EFT49047.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315150777|gb|EFT94793.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315163855|gb|EFU07872.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315169594|gb|EFU13611.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172458|gb|EFU16475.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315577853|gb|EFU90044.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|327535267|gb|AEA94101.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 236

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G  +      +    L  S + D   ++  L   G   LE
Sbjct: 5   LVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLP--GMDGLE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RRLK 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +                G IRV     +  V+ +   L  +E  +L Y M  + + + + 
Sbjct: 123 TTTEPLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   I+  +D A +  +V+ HIS LR K+  +      + + R  GY  
Sbjct: 183 TLLERIW-QYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRF 231


>gi|126664543|ref|ZP_01735527.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
 gi|126630869|gb|EBA01483.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
          Length = 226

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V    +    +    ++  +  +    + +S   D+  ++  L   G   L 
Sbjct: 4   LVIEDDHDVASYLVKGLRESDFVVDHADDGKKGMLMAASEEYDIMIVDRMLP--GMDGLA 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA    VP++ +S    +   ++    G DD + KP    E+LAR+ ++ RR + 
Sbjct: 62  IIKTVRATGNQVPILILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLIRRNRQ 121

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +           + +    R  +  G+   +  RE R+LEYLM N G+ V +T +   ++
Sbjct: 122 AAETETVLHVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+  +     + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHISRLRAKIDKEFDTPLLQTVRGAGYML 222


>gi|315169939|gb|EFU13956.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
          Length = 235

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 101/238 (42%), Gaps = 30/238 (12%)

Query: 5   IDDRALVKDGYIALFGDDGVSL-------EGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
           I+D   V +     F ++G          EG  +     +L S  + D+  ++  L    
Sbjct: 2   IEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTT-----FLASPEKWDMITLDLNLPS-- 54

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              + + R IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++
Sbjct: 55  MDGMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALH 114

Query: 117 RRLKVSNNRAE------------TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMAN 163
           RR +V+    +            T   ++ +  R+  +  ++   L  +E  +L  L   
Sbjct: 115 RRAEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKK 174

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 175 PRQVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 230


>gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
 gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
          Length = 243

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 101/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  + +   +   ++  +  + +E L      D  A+   ++   +   
Sbjct: 19  ILVVEDEKKINDVIVKILKQEKYGVD--SCYDGQEALDYIFSVDYDAVILDIMLPKKDGF 76

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ + IR  + + P++ ++    ++  +   D G DD + KP    E+LARV  + R+  
Sbjct: 77  EVLKKIREKNIKTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRKSS 136

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + N  +   + V  +            L  +E  ILEYL+ N+GK V+K +I   +
Sbjct: 137 DTSQTGNIFKVENLTVNCNDHTVFRDETSIKLSAKEFAILEYLIRNKGKVVSKEKIEEHV 196

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  FD     N+VE +I  LRKK+ +      + + R +GY +
Sbjct: 197 WD-FDYEGGSNIVEVYIKFLRKKIDDNFSPKLIHTIRRVGYIL 238


>gi|84494860|ref|ZP_00993979.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384353|gb|EAQ00233.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 225

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 14/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++          +G ++   +         +    D+  ++  L   G   LE
Sbjct: 5   LVVEDEPMINQAVTDRLRAEGYTVHQAHDGPAAVAAFTEHAPDLVVLDVMLP--GFDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R I+A   VP++ ++        L     G DD V KP   RE++AR  A+ RR++ +
Sbjct: 63  VCRRIQAIRPVPVLMLTARDEETDILVGLGVGADDYVTKPFRMREVVARTHALLRRVERA 122

Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              A T       G I +    R   V G+   L   E  +L  L +  G   ++ Q+  
Sbjct: 123 AELASTPAPTTHVGAIEIDGPARRVTVDGQDVHLTPLEFDLLAALASTPGAVRSREQLMG 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D +     ++SH+  LR K+    G   V +   +GY+++
Sbjct: 183 EVWGWADASG-TRTLDSHVKSLRAKI----GAARVRTVHGVGYALE 223


>gi|310659856|ref|YP_003937577.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Clostridium sticklandii DSM 519]
 gi|308826634|emb|CBH22672.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Clostridium sticklandii]
          Length = 231

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   + D        +G  +    + + E+ L+ +  E++  I   ++       E
Sbjct: 6   LIAEDEKPISDIIKFNLEKEGYEI--ITAYDGEDALKKALNEELELIILDIMLPSMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + +R  S VP+I ++        +   + G DD + KP   RE++ARV A  RR    
Sbjct: 64  ICKRVREKSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSIRELVARVKANVRRQEMN 123

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +      +   + +     + +       L  RE  +L++L   + +  ++ Q+  
Sbjct: 124 INADQQEKEIIKNKDLSIDLMKYEVKKGSTSIDLTVREFELLKFLAKQKDQVFSREQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            ++G ++   +   V+  + +LR+K+ +       + +KR +GY  
Sbjct: 184 RVWG-YEYYGDIRTVDVTVRRLREKVEDDSSNPTYIMTKRGVGYYF 228


>gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 228

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALKLLEEKEFDLIILDIMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D R   V+G+   L  +E  ILE L+ N+G  ++  +I+
Sbjct: 123 YNTPIDHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLVRNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGVGYKI 228


>gi|187776443|ref|ZP_02802733.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4196]
 gi|189406170|ref|ZP_02826753.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC508]
 gi|12516077|gb|AAG56982.1|AE005418_10 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362175|dbj|BAB36130.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767096|gb|EDU30940.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4196]
 gi|189376147|gb|EDU94563.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC508]
 gi|209766628|gb|ACI81626.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766630|gb|ACI81627.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766632|gb|ACI81628.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766634|gb|ACI81629.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766636|gb|ACI81630.1| putative 2-component transcriptional regulator [Escherichia coli]
          Length = 239

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 19  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234


>gi|330685400|gb|EGG97058.1| heme response regulator HssR [Staphylococcus epidermidis VCU121]
          Length = 224

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 100/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +        + E       + + D++ ++  +   G    E
Sbjct: 5   LIVDDDPKILNYVSTHLEREHFHTYTHTNGEEALHFLDNHQVDIAIVDIMM--HGMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +I+    +P+I ++   +L      F SG DD + KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCHMIKEDYDLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIFRIKAVLRRYHIH 122

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + +   G + +     +  V G+   LP +E ++L  L +N  +  ++T +   I+G +
Sbjct: 123 TDEKLTIGNLTLHQAYMEVVVNGKTMTLPNKEFQLLFLLASNEKQIFSRTHLIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  ++ HI +LR++L+       + + R  GY ++
Sbjct: 182 DYEGDERTIDVHIKRLRQRLQQLDSNVTIKTVRGQGYKVE 221


>gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 225

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 99/219 (45%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L+ +     F  +G  ++             +   D+  ++  +       ++
Sbjct: 6   LIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIP--KIDGVK 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + + +R  S++P+I ++    L+  L+  ++G DD + KP   +E++ RV  + RR  KV
Sbjct: 64  VCKQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKV 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +         +G+   L  +E  +L+ L  N  K + +  + + ++G+ 
Sbjct: 124 QEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGIA 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  + N+V+ +I  +R KL +K     + + R  GY +
Sbjct: 184 SDY-DSNIVDVYIKNIRNKLEDKP-PKLILTIRGRGYML 220


>gi|308234693|ref|ZP_07665430.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 246

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      +      D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR +   VP++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +          + +  D  D    G    L   E ++L YLM N G+ ++K+QI + +
Sbjct: 127 DPDEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN----------KLGFDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+            K     +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMI 238


>gi|293605229|ref|ZP_06687616.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292816372|gb|EFF75466.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 252

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D       D+G  +E  ++ +  E ++     D  A+   L+  G   LE
Sbjct: 18  LIVEDDAHIADLLRLHLRDEGYEVE--HAADGNEGMRRLEEGDWDALVLDLMLPGIDGLE 75

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + +  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 76  ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSSA 135

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++         + +    R  +V      L  RE  +L +   +  K  ++  + 
Sbjct: 136 IERNARIDAGSLAVHGVSIDPIARTVDVDDRRLDLTPREFDLLHFFARHPDKVFSRMDLL 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 196 NHVWG-YQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGRGYKF 241


>gi|260599895|ref|YP_003212466.1| transcriptional regulatory protein YedW [Cronobacter turicensis
           z3032]
 gi|260219072|emb|CBA34427.1| Probable transcriptional regulatory protein yedW [Cronobacter
           turicensis z3032]
          Length = 226

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 99/220 (45%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    +        + G+ ++     +  + L  +   D + I   ++  G    
Sbjct: 3   LLLIEDNDKTRAWLEKGLREAGLVVDA--VADGRDGLHLALEHDYALIILDIMLPGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++   ++   +   + G DD + KP    E+LARV A  RR   
Sbjct: 61  QVLRALRTAKATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHTP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    +   + + +        GE   L R+E  +L  L +  G+ + +T I S ++G+ 
Sbjct: 121 AAATLQVADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   E NVV+  I +LRKK+ +      +++ R +GY ++
Sbjct: 180 NFDSETNVVDVAIRRLRKKIDDPFPLKLIETVRGMGYRLN 219


>gi|166031390|ref|ZP_02234219.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
           27755]
 gi|166028795|gb|EDR47552.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score =  230 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  N  + E  L+ + +++ S     L+  G    
Sbjct: 4   ILIVEDEETIADLEKDYLELSGFEVEVAN--DGETGLEKALKDEYSLFILDLMLPGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKKIREEKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +R+ +  R   V         +E  +L +L ++      K ++F
Sbjct: 122 LTGSAVEKNKIIEIRGLRIDTTARRVWVNDVEKTFTTKEFDLLTFLASHPNHVYTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 REIWDM-ESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGYRF 227


>gi|328544531|ref|YP_004304640.1| Response regulators consisting of a chemotaxis protein CheY domain
           and a winged-helix DNA-binding domain [polymorphum
           gilvum SL003B-26A1]
 gi|326414273|gb|ADZ71336.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 224

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +         + G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   LLVVEDDADLNRQLTEALTEAGYVVDRAFDGEEGHFLGDTEPYDAVVLDLGLPKLDGLSV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  R  R   ++P++ ++        +   D+G DD V KP H  E+LARV A+ RR  
Sbjct: 63  LE--RWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N  E GP+R+        V G    L   E R+L YLM ++GK +++T++   +Y 
Sbjct: 121 GHASNEIECGPVRLDLRAGRVTVDGHPIKLTSHEYRLLAYLMHHKGKVISRTELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N VE  + +LRKKL    G +P+++ R LGY +
Sbjct: 181 Q-DFDRDSNTVEVFVGRLRKKL----GGEPIETIRGLGYRM 216


>gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 239

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +E   S +    +    + +   ++  +   G    E
Sbjct: 13  LVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMARELKPEAYILDVMMP--GMDGFE 70

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           L   +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 71  LLGKLRAEGLDAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNV 130

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  ++      + +  D  +    GE+  L   E  +L YLM N    ++K +I   
Sbjct: 131 TETETGDSTIRYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMLNAEVVLSKAKILDN 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+        +++ R +GY +
Sbjct: 191 VW-HYDFGGDGNVVESYISYLRRKVDQ-GEPQLINTVRGVGYVL 232


>gi|161702976|ref|YP_371670.2| DNA-binding response regulator CreB [Burkholderia sp. 383]
          Length = 236

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 18/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  I   G DG+        +         R D+ A++  L        
Sbjct: 6   ILIVEDEVAIADTIIYALGTDGMQTVHCTLGQAALDHLRDTRFDLVALDVGLPD--LSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +   + G DD V KP   RE+ ARV  I RR   
Sbjct: 64  EVCRRLRTFSDVPVIFLTARHDEIDRIVGLEIGADDYVIKPFSPRELAARVRVILRRFYR 123

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                      + +DG      G    L R E  +L  L+ + G+  +
Sbjct: 124 TAAPESPLAPAPAPAATIAPGFTLDTDGARVSWLGHALDLTRYEFGLLALLVRHPGRIYS 183

Query: 170 KTQIFSAIY-GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + Q+   ++   FD A  +  V++HI  LR KLR      DP+ + R +GYS+
Sbjct: 184 REQLMDLVWHEAFDSA--DRTVDTHIKTLRAKLRAIDPERDPIRTHRGMGYSL 234


>gi|163791510|ref|ZP_02185916.1| response regulator [Carnobacterium sp. AT7]
 gi|159873233|gb|EDP67331.1| response regulator [Carnobacterium sp. AT7]
          Length = 241

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +  F +   E+ ++ +   D   I   L+      +
Sbjct: 8   LLVVDDEDRIRRLLKMYLERENYVV--FEADNGEDAIKMALENDYDLILLDLMLPKMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR     P++ ++      + ++ F+ G DD + KP   RE++ RV+AI +R + 
Sbjct: 66  EVAGKIREAKDTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQS 125

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S  +        E     +          G    L  +E  +L YL  +  +   + Q+ 
Sbjct: 126 SKPKEKANPDLIEMPHFEIDDQSHRVLADGNPVNLTPKEYDLLLYLAQSPDQIFGREQLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221
             ++  ++   +   V++HI +LR+KL   ++     + +   LGY  +
Sbjct: 186 REVW-KYEFFGDLRTVDTHIKRLREKLTKHSEPAAKMIVTVWGLGYKFN 233


>gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR
 gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 220

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +   ++     +       S   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPN--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +   P+I I+        +   D G DD + KP    E+LAR+ A+ RR + 
Sbjct: 62  EICRQIRQNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N  +   I +  D     V G+   L + E  +L  L+ NR   + + QI + ++G +
Sbjct: 121 QKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  VE NVV+ +I  LR KL+       +++ R +GY +
Sbjct: 180 DTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYVV 218


>gi|309972896|gb|ADO96097.1| Probable two-component regulator,transcriptional regulatory
           component QseB [Haemophilus influenzae R2846]
          Length = 221

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L       L
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLP--KLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           ++ +  R+ H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A+  RR 
Sbjct: 61  DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E   +++  + R   +  +   L  RE ++LE  M N+ + +++T I   +  
Sbjct: 121 GHHHSVIEQSGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKL-S 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 216


>gi|238783526|ref|ZP_04627548.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri
           ATCC 43970]
 gi|238715581|gb|EEQ07571.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri
           ATCC 43970]
          Length = 220

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 106/221 (47%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +G + +   +    + L  S++  +  ++  L  +   VL
Sbjct: 3   LLIVEDDELLQRGIAMALTSEGYACDCAGTAAEAQGLLQSSQYSMVILDLGLPDQDGAVL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR + 
Sbjct: 63  -LRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  +   + +    +   +Q +   +  +E  IL  L+   G+ V +  +   +Y  
Sbjct: 122 QSDNLVQQDDLSLNLSTQQVWLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYTW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 182 NDDLG-SNTLEVHIHNLRRKL----GKDRIRTIRGVGYRLE 217


>gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
           ATCC 53653]
          Length = 234

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++   A     G ++    +              +  ++  L        
Sbjct: 7   LLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQPPGLIVLDVMLPDF--DGF 64

Query: 62  ELPRIIRAH------SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           E+ R +R H         P++ ++   + +  +    +G DD V KP +  E++ R+ AI
Sbjct: 65  EVVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAI 124

Query: 116 YRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR   + ++ R   G + +  D       G    L   E  +L  LM N G+ ++K+Q+
Sbjct: 125 LRRTSGRQTDGRLVVGALELDPDSHQVTRDGSPVQLSPTEFSLLRVLMENAGQVLSKSQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++  +D   ++++V S+IS LR+K+ +      + + R  GY +
Sbjct: 185 LELVW-QYDFGGDDSIVASYISYLRRKV-DLDEPKLIHTVRGTGYVL 229


>gi|229826987|ref|ZP_04453056.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC
           49176]
 gi|229788605|gb|EEP24719.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC
           49176]
          Length = 225

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +  +D   +         ++G S++  F+  E  + +Q     DV+ ++  L       
Sbjct: 3   LLYAEDEPDLNRIVTKKLAEEGFSVDSCFDGREAIDNIQ-FTDYDVAILDIMLPHA--DG 59

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-R 118
             + + +R      P++ ++   S++  +   DSG +D + KP    E+LAR+  + R +
Sbjct: 60  FAILKELRKLKKNTPVLFLTARDSIEDRVKGLDSGANDYLVKPFSFEELLARIRVMTREK 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S N      + +          G+   L  +E ++LEYLM N+ K +++ +I + I+
Sbjct: 120 HNLSENILTIADLCLNLSSHTVTRDGKEISLTSKEYQLLEYLMYNKEKVLSREKIENHIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D     NV++ +I  LRKK+ +      + + R  GY I
Sbjct: 180 N-YDYEGGTNVIDVYIRYLRKKIDDGFDTKLIHTVRGAGYVI 220


>gi|153938240|ref|YP_001391588.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934136|gb|ABS39634.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319616|gb|ADF99993.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 234

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G  + + F+ LE  E  Q    ED   +   ++      
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQG---EDYHMVIMDVMMPVMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R IR  S+VP+I +S        +     G DD + KP    E++ARV    RR  
Sbjct: 63  IESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAI 122

Query: 121 VSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N           E G ++   +       G+   L  +E +IL+    N  +   K Q
Sbjct: 123 YYNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I+ +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 183 IYDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|89108797|ref|AP_002577.1| predicted DNA-binding response regulator in two-component system
           withYedV [Escherichia coli str. K-12 substr. W3110]
 gi|90111362|ref|NP_416478.2| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. MG1655]
 gi|170081609|ref|YP_001730929.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238901170|ref|YP_002926966.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BW2952]
 gi|13878938|sp|P76340|YEDW_ECOLI RecName: Full=Probable transcriptional regulatory protein yedW
 gi|85675172|dbj|BAA15796.2| predicted DNA-binding response regulator in two-component system
           withYedV [Escherichia coli str. K12 substr. W3110]
 gi|87082012|gb|AAC75035.2| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. MG1655]
 gi|169889444|gb|ACB03151.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. DH10B]
 gi|238862252|gb|ACR64250.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BW2952]
          Length = 223

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S             L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|228990093|ref|ZP_04150065.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228769621|gb|EEM18212.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 232

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A V D        +G  +      + +E ++    + +  +   ++       
Sbjct: 6   ILIADDEAEVADLIAIHLEKEGYHV--IKVADGKEAIRVIHSQPIDLVILDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAQYHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLRRFLM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + + +  E G + ++ + R   V  E   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKAEDNKSVLEIGGVVIYPEQRTVSVYEEQIELTPKEFDILYLLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-AEDYYEGRNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|170701392|ref|ZP_02892352.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170133701|gb|EDT02069.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 277

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   +S +  E L+   + +  A+   L+  G   L
Sbjct: 45  ILIVEDDADIADVLSLHLRDERYEV--VHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 102

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 103 EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 162

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 163 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 222

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 223 LNAVWG-YQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 269


>gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
 gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
          Length = 227

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  ++G  +                  D+  ++  L   G    
Sbjct: 5   ILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQFQEHNPDLVLLDVMLP--GMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R IR  S  P++ ++        +   ++G DD V KP   +E++ARV A  R  + 
Sbjct: 63  DVCRAIRRVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRED 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++       + +   G   + +G V  L   E  +L  L  +  K  ++ ++   ++G
Sbjct: 123 SQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            +  A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 -YRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGYR 222


>gi|291301374|ref|YP_003512652.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290570594|gb|ADD43559.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 230

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 10/222 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D A + D        DG  +              S R    A++  L   G+  
Sbjct: 10  LVLIAEDDAAIADLVSMYLRRDGFGVRVETDGVGALTAIRSVRPVAVALDIGLP--GKDG 67

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +EL   +RA     P++ ++        L   + G DD + KP   RE+ ARV  + RR 
Sbjct: 68  IELCTELRAAGDWTPVLFMTARDDEVDRLLGLEIGADDYITKPFSPRELTARVRTVLRRA 127

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +      G +R+    R          L   E  +L  LM N G+  A+ Q+ SA
Sbjct: 128 SGGSAATEALTVGAVRLDPARRRVWAADAEVELTVTEFDLLASLMRNPGQVFAREQLLSA 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G    A     V+ HI++LR KL +     P+ + R +GY
Sbjct: 188 VWGYTASAG-TRTVDVHIAQLRGKLGD---HSPIRTVRGVGY 225


>gi|229119190|ref|ZP_04248509.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228664279|gb|EEL19801.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
          Length = 256

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 93/231 (40%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   +++        +   +    N  E  + L  + + D+  ++  +  K     
Sbjct: 25  LIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWD-LFLTHQPDLIILDLMMPKK--DGW 81

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL   IR  S VP+I ++     +  +     G DD V KP   RE++ RV  I RR   
Sbjct: 82  ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGSQ 141

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +      E   ++++   R   V      L  +E  +L  +  +  +  +++Q+
Sbjct: 142 VPIQAKESLTEVIEFPDLKIYPKTRCVLVCENKVELTAKEFEVLYLMAKHPKQVFSRSQL 201

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223
              I+   +  V  N+V   +S+LR KL    +    + +   +GY  + N
Sbjct: 202 LELIWDT-EHEVATNIVTVLVSRLRDKLEKHTIKSRWIHTVWGIGYRFEPN 251


>gi|229004154|ref|ZP_04161955.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757015|gb|EEM06259.1| Two-component response regulator [Bacillus mycoides Rock1-4]
          Length = 210

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 85/203 (41%), Gaps = 13/203 (6%)

Query: 28  GFNSLEFEEW-----LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           G+   E E       +  +   D   ++  +       + + + IR  S VP+I ++   
Sbjct: 13  GYEWGEAENGKDALHMLDTDHYDFVILDIMMPQ--MDGISVCKEIRKTSDVPIIFLTAKG 70

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRD 139
                ++    G DD + KP    E++AR+ A+ RR           + G I +    R 
Sbjct: 71  EEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEELQFGSIVINEKSRR 130

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
            E+ GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A     V++H+  +R 
Sbjct: 131 IEIDGEPISLTVKEFDLLYFLCGHNGQVFSREQLLEKVWG-YDYAGSTRTVDTHVKTMRL 189

Query: 200 KLRNKLGFDPVDSKRFLGYSIDW 222
           KL      + + +   +GY  + 
Sbjct: 190 KLGESG--NYIQTVWGVGYKFEV 210


>gi|148556346|ref|YP_001263928.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501536|gb|ABQ69790.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 220

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A     G +++     E   +L S+   D   ++  L       L 
Sbjct: 4   LIVEDEPNLGRQLRATLEGAGYAVDLATDGEDGHFLGSTESYDAIILDLGLPEV--DGLT 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R  R     P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR   
Sbjct: 62  VLDRWRREGKDTPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASG 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++    G +R+ +      + GE   L  +E ++L YL+ ++GK V++T++   IY  
Sbjct: 122 NASSELIAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + N +E  ++++RKKL    G D + + R LGYS+D
Sbjct: 182 -DFDRDSNTIEVFVTRIRKKL----GQDVITTIRGLGYSLD 217


>gi|332981325|ref|YP_004462766.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699003|gb|AEE95944.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 235

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +       + G  +E     E           D+  ++  L   G   L
Sbjct: 6   ILVVDDEAHILELIRFNLENAGYKVEVAEDGETALKFCRQQVPDLIILDIMLP--GIDGL 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + +RA    ++VP+I ++        +   + G DD + KP   RE++ARV A+ RR
Sbjct: 64  EVCKTLRASVATAKVPIIMLTAKGEEIDKVVGLEIGADDYIAKPFGIRELIARVKALLRR 123

Query: 119 LKVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + ++      + G + + +   +    G       +E  +L+ L+ N+GK +++  +  
Sbjct: 124 TENNDMEPKIIKVGGLTIDTSKYEVYKNGNKLDFTLKEFELLKLLVLNQGKVLSRDYLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++G ++   E   V+ HI  +R+KL +       +++ R +GY  
Sbjct: 184 QVWG-YEYFGETRTVDVHIRHIRQKLGDDMDEAKYIETIRGVGYKF 228


>gi|239944236|ref|ZP_04696173.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990692|ref|ZP_04711356.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447708|ref|ZP_06587098.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291350655|gb|EFE77559.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 245

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAARPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 224

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V+D  +     +G  +             ++ R     ++  +       L 
Sbjct: 4   LVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITAWRPGAIVLDLLMPF--MDGLT 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++   ++   +D  D+G DD + KP    E+LARV A+ RR   
Sbjct: 62  MCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRRSYP 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++       + V +             L R E  +LE L+ N G+ + +  +   ++G 
Sbjct: 122 GDDTVLRCADLAVDTGAHRVRRGHRTVELSRTEYALLEVLLRNAGQAMPRGLLVERVWGQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D     N +E ++  LR+KL        V + R +GY +D +
Sbjct: 182 -DFGPSSNSLEVYVRYLRRKLEAGGEPRLVHTVRGVGYRLDES 223


>gi|323494003|ref|ZP_08099119.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
 gi|323311630|gb|EGA64778.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
          Length = 221

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 6/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M ++++D   +           G       +  E  +W       D+  ++  L  +   
Sbjct: 1   MILIVEDEPSLASVVADYLSHSGYQTHIIGDGAEVIDW-VRQYNPDLILLDLMLPNR--D 57

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L++ R +R+ S +P+I  +        L   + G DD V KP   RE++ARV  + RR 
Sbjct: 58  GLDIYRELRSFSDIPIIMATAKVDEIDRLLGLELGADDYVCKPYSPRELVARVKNVLRRF 117

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +     P++V  D     V      L   E ++L Y   + G+  ++ Q+ + IY 
Sbjct: 118 QHTPSHTTRSPLKVDPDKMQTLVDDTPVMLTPAEFQLLCYFNQHHGQVFSRDQLMNRIY- 176

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
                V +  ++SHI  LRKK++     +D + S   +GY  + +
Sbjct: 177 SDGRVVTDRTIDSHIKNLRKKVQAVNDQYDWIKSVYGVGYRFELD 221


>gi|322806627|emb|CBZ04196.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 235

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G  + + F+ LE  E  Q      +  ++  +       
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQ-GENYHMVIMDVMMPV--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R IR  S+VP+I +S        +     G DD + KP    E++ARV    RR  
Sbjct: 63  IESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELVARVKCNIRRAI 122

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N           E G ++   +      +G+   L  +E +IL+    N  +   K Q
Sbjct: 123 YYNETKSIKENKIYEYGDVKFDMNNYTVTKRGKELTLTAKEIKILKLFFENPNRVFTKVQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I+ +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 183 IYDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 306

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +E   S +      +    D+  ++  L         
Sbjct: 82  LVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGD--IDGFA 139

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +   +R A   VP + ++   + Q  +     G DD V KP    E++ARV AI RR   
Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + +    R+    G +  L   E R+L++L+AN    + + Q+  
Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D + E  V+E++IS LR+K+ N +    + + R +GY +
Sbjct: 260 HVWG-HDFSGEGGVLETYISYLRRKVDN-VEPPLIHTVRGVGYVL 302


>gi|257125818|ref|YP_003163932.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257049757|gb|ACV38941.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 226

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   + D  +     +   ++   N  +   ++ S+   DV   +  L   G   
Sbjct: 3   ILVIEDEENLNDIIVKKLTMEKYGVDSCLNGTDALNYIFST-EYDVIVSDIMLP--GLDG 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ + IR +  + P++ ++    ++  +   D G DD + KP    E++AR+  + RR 
Sbjct: 60  FEILKKIRENGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRRN 119

Query: 120 KVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             SN    N  +   + V  +  D         L  RE  ILEY++ N+ + +++ QI  
Sbjct: 120 PTSNSNASNVFKIANLTVNCNSHDVFRDETFIKLSTREFTILEYMIRNKERVLSREQIEQ 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+  +D     NV++ +I  LR+K+        + + R +GY +
Sbjct: 180 HIWN-YDYEGGTNVIDVYIRYLRRKIDKGFEPKLIHTIRGIGYVL 223


>gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268]
 gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268]
          Length = 224

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED-VSAIEAFLIGKGEKV 60
            +++DD   ++             +    +   EE +    +E  ++ I   ++      
Sbjct: 6   ILVVDDEERMQKLLKDFLKMKDYEV--LLAGNGEEAIDLFFKEKSIALIILDVMMPKMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               + IR HS+VP+I ++        L  FD G D+ ++KP   + ++ARV A+ RR  
Sbjct: 64  WTALKTIREHSKVPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALLRRSG 123

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V      E G I +        V G+   L  +E  +L+Y + N+G  +++ +I + ++ 
Sbjct: 124 VQKEELLEVGGIVIDEAAHSVTVDGKPIELSFKEYELLQYFVENKGIALSREKILNNVWN 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR KL +K   + + +   +GY  + 
Sbjct: 184 -YDYFGDARTIDTHVKKLRAKLMDKG--EYIKTVWGMGYKFEV 223


>gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
 gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
          Length = 223

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  +D   +++  +     +G  ++G            S   DV  ++  +   G   L
Sbjct: 3   ILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMP--GIDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +R+     P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  TVLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               + A    + V    R     G    L  RE  +LE L+ ++G  +++TQ+ + ++ 
Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F      N+V+ +I  LRKK+ +      + + R  GY++
Sbjct: 181 -FGFEGGSNIVDVYIRYLRKKIDDPFEKKLIHTVRGAGYTL 220


>gi|254423150|ref|ZP_05036868.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190639|gb|EDX85603.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 236

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 17/229 (7%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D   +         + G  +E  +  +           DV  ++  +   G+  L + +
Sbjct: 7   EDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMP--GKDGLFILK 64

Query: 66  IIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
            +R      P+I ++    L   L   + G DD + KP    E++AR+ A+ RR      
Sbjct: 65  NLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSAGEQP 124

Query: 124 NRAETGPIRVFSDGRDPEVQGE------------VFPLPRRERRILEYLMANRGKRVAKT 171
           N    GP ++    R    Q E            V  L  RE  +LEYLM + G+   +T
Sbjct: 125 NLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRVFTRT 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+   ++G +D     NVV+  I +LRKK+  K     ++S R +GY  
Sbjct: 185 QMLEHVWG-YDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRF 232


>gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 245

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+   +   +S +  E L+   +    A+   L+  G   L
Sbjct: 7   ILIVEDDIDIANVLSLHLRDERYEV--VHSADGNEGLRLLEQGGWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K+         + +    R+  V G+   L  RE  +L Y   + GK  ++  +
Sbjct: 125 ALAKDSKIEAGSLRIAGLSIDPLTREAAVDGKPIELTPREFDLLYYFAQHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +    + + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 231


>gi|298491165|ref|YP_003721342.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233083|gb|ADI64219.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 229

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 105/219 (47%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A + +   A   + G  ++  ++ +   +       DV  ++  L   G+  L
Sbjct: 3   ILYIEDEAKIANFVCAGLKEQGFVVDYIDNGDEGYYRAMENEYDVIVLDIMLP--GKDGL 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + + RA   +P+I ++    L   L+  + G DD ++KP    E++AR+ A+ RR+ 
Sbjct: 61  AILKSLRRAGRNLPVILLTARNELDDRLEGLNLGADDYLSKPFFVEELIARIHAVIRRIS 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N    G + +    R+     ++  L  RE  +LEYLM + G+   +TQI   ++G
Sbjct: 121 GERQNILRVGSLALDRITREVTCNYQLVELTTREFNLLEYLMRSPGRVFTRTQILEHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +D     N+V+  + +LRKK+    G   +DS R +GY
Sbjct: 181 -YDFNPNTNLVDVCVQRLRKKIEKVAGDSWIDSVRSVGY 218


>gi|315647320|ref|ZP_07900433.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277522|gb|EFU40851.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 235

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 97/232 (41%), Gaps = 20/232 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-----LQSSAREDVSAIEAFLIGK 56
            ++I+D   +         +D + ++GF++   E          + + D   ++  L   
Sbjct: 7   ILIIEDEQDIS-----RIVNDYLRVQGFSAFIAENASDGLREVRNRQPDFIILDLTLPDA 61

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
               +E+ R +R  +  P++ +S   S    +     G DD + KP    E++ARV A  
Sbjct: 62  --DGIEVCRKLRTLTAAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHL 119

Query: 117 RRL------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RRL        +        + +    R          L  +E  +L +L ++  +   K
Sbjct: 120 RRLADPKFKATTQQLLRFDSLSIDKTARKVMAGHLEISLSAKEFDLLYFLASHPNQVFTK 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +Q+   ++G +   VE+N +  +I +LR+KL R+++    + +   +GY  D
Sbjct: 180 SQLLDQVWG-YSAFVEDNTITVYIRRLREKLERSEIKHSYITTVWGVGYKFD 230


>gi|121583131|ref|YP_973572.1| two component heavy metal response transcriptional regulator
           [Polaromonas naphthalenivorans CJ2]
 gi|120596393|gb|ABM39830.1| two component heavy metal response transcriptional regulator,
           winged helix family [Polaromonas naphthalenivorans CJ2]
          Length = 226

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G ++E  ++         +    +  ++  L   G    
Sbjct: 3   ILVIEDEPRAADYLRQGLMESGYAVEVAHNGTDGLHAAVNGDHGLVILDIMLP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R   Q+P++ ++   +    +  FD G DD + KP    E+LARV A+ +R + 
Sbjct: 61  AVLSALRTSRQIPVLMLTARGNTDDKVRGFDLGADDYLLKPFQFPELLARVRALLKRGQP 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V +       + +          G+   L  +E  +L  L    G+ +++TQI S ++ 
Sbjct: 121 VVKDPVLRAADLEIDPVRHRATRAGQRIDLSAKEFALLTLLAQRAGEVLSRTQIASLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 IH-FDSDTNVVEVAIRRLRAKIDDPFDDKLIHTVRGVGYVLE 221


>gi|299538648|ref|ZP_07051931.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298726235|gb|EFI66827.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 225

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++       ++G+ +    +++  + L     E +  +   ++       
Sbjct: 4   LLVVDDDAHIRELVKVFLQNEGLEV--IEAIDGVDALSKLDTEKIDMVVMDIMMPNMDGW 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   IR+ ++ +P++ ++        +  F  G DD + KP    E++ RV +I +R +
Sbjct: 62  ALCEEIRSFNTDLPILMLTAKGETSQKIKGFHLGTDDYLVKPFEPAELIVRVKSILKRYR 121

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S +   E G +++     + E+ GE+  L  +E  +L  L +  GK  ++ Q+   I+G
Sbjct: 122 ISLSQVVEAGHVKLNRHTHEVEMNGEMILLRLKEFELLFTLASYVGKTFSREQLIEEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +E  V+ HI ++R++   +     + + R LGY ++
Sbjct: 182 -YDYEGDERTVDVHIKRIRERFPQEASGIAIRTIRGLGYRLE 222


>gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D     V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC
           35316]
          Length = 235

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 98/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G ++           L      D   ++  L       L
Sbjct: 4   ILLVEDDRDIAALLRLNLEDEGYTITHEPDGGNALRLLEKQSWDAVILDLMLPSV--DGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   ++G DD + KP   +E++AR+ A++RR +
Sbjct: 62  EICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQ 121

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 ++       + +    R   + G+   L  RE  +L +   + G+  ++ ++  
Sbjct: 122 AMGQAQNDGHIHAHGLTLDPLARTVRLNGQEVDLTPREFELLYFFARHPGEVFSRLELLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI-DWN 223
            ++G +     E+ V +HI++LR K+  +    + V +    GY   + N
Sbjct: 182 QVWG-YQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAELN 230


>gi|160932361|ref|ZP_02079752.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753]
 gi|156868963|gb|EDO62335.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753]
          Length = 233

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  F +         +   D++ ++  L        
Sbjct: 5   ILIVDDEVEIADLIEVYLKNENYTVFKFYTAMEALECIDTTTLDLAILDIMLPD--ISGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR     P+I ++   +    +     G DD + KP    E++ARV +  RR K 
Sbjct: 63  TLCQKIRERYTYPVIMLTAKDTETDKITGLTLGADDYITKPFRPLEMVARVKSQLRRYKK 122

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N        +      + +     +  +  +   L   E  IL+ L+ NRG  ++  ++
Sbjct: 123 YNVTLPEEKRHIILYSNLTLDIKKHECLLNDKPISLTPTEFSILQILLENRGIVISGEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           F  I+         N +  HI +LR+KL + L     + +   +GY I+
Sbjct: 183 FHRIWKDEYYTKSNNTITVHIRRLREKLGDTLENPKYIKTIWGVGYKIE 231


>gi|311114543|ref|YP_003985764.1| response regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946037|gb|ADP38741.1| response regulator [Gardnerella vaginalis ATCC 14019]
          Length = 250

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +E   S      +      D+  ++  L        
Sbjct: 13  IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPD--IDGF 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR +   VP++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 71  TVTRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 130

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +          + +  D  D    G    L   E ++L YLM N G+ ++K+QI + +
Sbjct: 131 DPDEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN----------KLGFDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+            K     +++KR +GY I
Sbjct: 191 W-QYDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMI 242


>gi|150388383|ref|YP_001318432.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948245|gb|ABR46773.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 236

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 99/230 (43%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +                + D+  ++  L   G    
Sbjct: 6   ILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLP--GLDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR  S  P+I ++    L+  +     G DD V KP    E+LAR+ A+ RR+  
Sbjct: 64  QVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQ 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   NR E   +    D     +  ++  +PRRE ++L+YLM    +   + ++
Sbjct: 124 DHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
              I+G +D   E+ V++ +I +LRK+L++K      + +   +GY  + 
Sbjct: 184 IEGIWG-WDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEV 232


>gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 228

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 104/228 (45%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++        ++G+ + +  N+LE    L+  A  D+  ++  +       
Sbjct: 5   ILIVDDDKEIRHLISVYLENEGLKTSQAENALEALGKLEEQA-FDLIILDIMMPE--MDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K
Sbjct: 62  IEACMKIREEQHMPIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRRYK 121

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N  +E        G + + +D R     G+   L  +E  ILE L  N+G  ++ ++I
Sbjct: 122 KYNTESEADKNVIVIGSLEINTDTRLVYAGGKEIRLTPKEFDILELLARNKGIVMSVSKI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +++   D    +N V  HI+K+R+K+         + +   +GY I
Sbjct: 182 YESVW-KEDLLKSDNTVMVHITKIREKIEEDPKHPIYIKTIWGVGYKI 228


>gi|326383263|ref|ZP_08204951.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198013|gb|EGD55199.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 225

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +  ++G                   R D+  ++  L   G   +
Sbjct: 5   ILVVDDDAALAEMLTIVLKNEGFEPFVVGDGTQALTAVREVRPDLVLLDLMLP--GMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++R+ S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR + 
Sbjct: 63  DVCRVLRSDSGVPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARIRARLRRTED 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   GP+ +          G    L   E  +L  L     +   +  +   ++G 
Sbjct: 123 DPAELLAIGPVEIDVPAHKVTRDGVPISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +    +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEIDPENPEIVLTVRGVGYK 221


>gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
 gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
          Length = 226

 Score =  230 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  ++   + +  E L+     +   I   ++  G   +
Sbjct: 6   ILLVEDEEQMSMFIEMELTHEGYKVDV--AYDGREALEKVENTEYQLILLDIMIPGLNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           E+ R IR  S VP+I ++    +   +   D G +D + KP    E+LAR+    R   +
Sbjct: 64  EVCRRIRQFSCVPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARIRVYEREKLV 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   +  +   I + +        G    L ++E  +L+ L+ N+   + + ++   ++G
Sbjct: 124 KSKFDEVKVKDIVMDNKTHQVWRSGREIELTKKEYDLLQKLLINKNIVLTRERLIEEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   + NVV+  I  LR K+ N      + + R +GY I  N
Sbjct: 184 -YDYVGDTNVVDVFIRYLRSKIDNGSKEKLITTIRGVGYVIKDN 226


>gi|329939736|ref|ZP_08289037.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301306|gb|EGG45201.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 245

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|281179028|dbj|BAI55358.1| two-component response regulator [Escherichia coli SE15]
          Length = 239

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 103/219 (47%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++     F + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 19  ILLIEDNQRTQEWVTQGFSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234


>gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis]
 gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus
           faecalis 62]
          Length = 236

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G  +      +    L  S + D   ++  L   G   LE
Sbjct: 5   LVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLP--GMDGLE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RRLK 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +                G IRV     +  V+ +   L  +E  +L Y M  + + + + 
Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   I+  +D A +  +V+ HIS LR K+  +      + + R  GY  
Sbjct: 183 TLLERIW-QYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRF 231


>gi|332653383|ref|ZP_08419128.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332518529|gb|EGJ48132.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 230

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +      +  D G  S   F+  E   W +     D+  ++  L   G   
Sbjct: 6   ILVVEDDQDINRLLCTILNDAGYFSQSAFSGSEAMLWAEKEG-FDLVLLDLMLP--GLTG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E    +R H  +P+I +S    ++  +     G DD + KP  ++E+LARV A  RR+K
Sbjct: 63  EEFIAKVRQHGTMPIIVLSAKAGVEDRVKVLRLGADDFIPKPFDNQEVLARVEAQLRRVK 122

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +   E       G + +  +      +G    L  RE  IL  LM    +   + QI+
Sbjct: 123 KFSAPPEKKQRFVCGDLCLDREEFTVTAEGNPVTLTAREFEILALLMEYPKRVFTREQIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G  D   ++N V  HIS LR KL      + + +   +G+ +
Sbjct: 183 QHVWGE-DYFGDDNTVNVHISNLRSKLGKVSKQEFIKTVWGIGFKM 227


>gi|194291903|ref|YP_002007810.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424]
 gi|193225807|emb|CAQ71753.1| putative response regulator, OmpR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 224

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +     A   D G +++          L +    D   ++  L       L
Sbjct: 3   ILLVEDEATLAAQVRASLADAGYAVDTAADGLDAWHLGAEEPYDAVILDLGLPR--LDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R  RA     P++ ++   S    ++  D+G DD ++KP    E+LAR+ A+ RR  
Sbjct: 61  SVLRRWRAAQVNAPVLILTARDSWTEKVEGIDAGADDYLSKPFRMEELLARIRALIRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + GP+R+        V G    L   E R+L+YLM + G  V+KT +   IY 
Sbjct: 121 GMPAPELQCGPVRMNPRAGTVSVDGAPVVLTAHEFRVLDYLMHHPGAIVSKTALTEHIYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LR+KL    G D +++ R  GY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRRKL----GVDIIETVRGQGYRL 216


>gi|325679549|ref|ZP_08159129.1| transcriptional regulatory protein afsQ1 [Ruminococcus albus 8]
 gi|324108836|gb|EGC03072.1| transcriptional regulatory protein afsQ1 [Ruminococcus albus 8]
          Length = 220

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 98/222 (44%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++++G       +G      +S+   + L      D+  ++  L        
Sbjct: 3   ILLVEDDPIIQEGLKLALTSEGCGFAAASSVAEAKALL-GGEYDICILDVMLPD--GTGY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IR     P+I ++       T+   ++G DD + KP   RE++AR+ A+ RR+  
Sbjct: 60  DVCAEIRRKGDTPVIFLTACDDELHTVLALENGADDYIAKPFRMRELMARIKAVLRRMGR 119

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S    + G   V          G    L   E ++L   + NRG  +++ Q+   I+
Sbjct: 120 KTDSEEPVKVGSNDVNVRTGKVFRDGSEVILTAMEYKLLLIFINNRGAVLSRQQLLHNIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  + V +N +  ++ +LR+KL N  G + + + R LGY +
Sbjct: 180 DVAGDYVTDNTLTVYVKRLREKLEN--GDEVIQTVRGLGYRL 219


>gi|251796140|ref|YP_003010871.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543766|gb|ACT00785.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 229

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G ++E     +           D+  ++  L        
Sbjct: 4   ILIIEDEKAIAELERDYLESHGFAVEIEGRGDIGLQKALGGSYDLIILDVMLP--KLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    VP++ ++        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICRQIRQTKNVPVLLVTAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+ +     + +    R   +      L  +E  +L  L ++  +   K ++F
Sbjct: 122 LTAERGESHEQIGIRGLLIDVTSRRVTIHDREAMLTSKEYDLLLLLASHPNRVFEKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+GL D   +   V  HI +LR+K+  +      +++   +GY  
Sbjct: 182 ERIWGL-DSNGDAATVTVHIRRLREKIEHDPSNPQYIETIWGVGYRF 227


>gi|116333923|ref|YP_795450.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099270|gb|ABJ64419.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 262

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 100/239 (41%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEK 59
            ++I+D   V       F  +    E  ++  E  E   ++    D+  ++  L   G  
Sbjct: 21  LLMIEDNHSVSQMMSMFFKKEQWDAEFAYDGNEAVEMFSANPNIWDMVTLDLNLP--GMD 78

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++   IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++RR
Sbjct: 79  GMQVSAEIRKLSPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRR 138

Query: 119 LKVSNNR---------------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMA 162
            ++                     T   ++ +  R+  + G     L  +E  +L+ L  
Sbjct: 139 AELGPTAKPTEAEPLNETEAFDVVTENFKLNTKTREAYLNGHQIQDLTPKEFDLLKTLAQ 198

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 199 KPRQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 255


>gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 232

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +           +  S   ++  ++  +       L
Sbjct: 3   ILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEHPELLILDVMMPN--MDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++    +   +   D+G DD + KP    E+LARV ++ RR  
Sbjct: 61  EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120

Query: 121 VSN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +         +     +++ +D R+         L R E  +L  LM N  K +++  
Sbjct: 121 AESIAKKQPVETQLSFEDLKLDADTREVTRGERQISLTRTEFALLRLLMENPRKVLSRNT 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G +D     N +E +I  LRKK         + + R +GY +
Sbjct: 181 ILEEVWG-YDFPTSGNALEVYIGYLRKKTEESGEPRLIHTVRGVGYVM 227


>gi|156936234|ref|YP_001440151.1| transcriptional regulatory protein YedW [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534488|gb|ABU79314.1| hypothetical protein ESA_04133 [Cronobacter sakazakii ATCC BAA-894]
          Length = 226

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 100/220 (45%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    +        + G+ ++     +  + L  +  +D + I   ++  G    
Sbjct: 3   LLLIEDNDKTRAWLEKGLREAGLVVD--TVADGRDGLHLALEQDYALIILDIMLPGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++   ++   +   + G DD + KP    E+LARV A  RR   
Sbjct: 61  QVLRALRTAKATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHAP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    +   + + +        GE   L R+E  +L  L +  G+ + +T I S ++G+ 
Sbjct: 121 AAATLQVADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   E NVV+  I +LRKK+ +      +++ R +GY ++
Sbjct: 180 NFDSETNVVDVAIRRLRKKIDDPFPLKLIETVRGMGYRLN 219


>gi|222053517|ref|YP_002535879.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221562806|gb|ACM18778.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 224

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++   +    + + EE L+ +  ++   +    +      L
Sbjct: 3   ILVVEDEKKVLSFIKRGLEEEQYEV--VTAGDGEEGLKMAMEKNFDLLILDWMLPKMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +++     P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR +
Sbjct: 61  SVLKELKSQKNTTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      +R+         + +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+        + + R +GY +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDRDADKKLIHTVRGVGYIL 220


>gi|23098039|ref|NP_691505.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776264|dbj|BAC12540.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 227

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 13/223 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   +++   A    +G      ++ E    L  +   D+  ++  L   G    E 
Sbjct: 7   LVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLP--GMDGYEF 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---- 119
            + IR  S VP+I IS        +   + G DD + KP   RE++ARV  +++R     
Sbjct: 65  CKKIRNESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRSTSHR 124

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++  +R +   + V+ + R    +GE F    +E  +L  L  N  +  ++ ++   I
Sbjct: 125 QDEIEEDRVKVDQLLVYKNERRVFFEGEEFETTTKEYDMLLLLAENPNRAFSREELLMKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D    +  V+  I ++RKK+ N     P+++    GY +
Sbjct: 185 WGN-DYFGSDRAVDDLIKRIRKKMGNI----PLETVWGFGYRL 222


>gi|304569547|ref|NP_441728.2| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 243

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 100/226 (44%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE + +    D   +   ++       
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYEV--VTAADGEEAIATFHESDPDLVVLDVMMPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGMPGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGY 231


>gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 224

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   A   +   +++     E       +   D+  ++  L       +
Sbjct: 3   ILLVEDDERIANVLAASLTEQRYTVDMAGDGEKGWEFIEAFSYDLILLDVMLP--KLNGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + IR     +P++ ++   + +  +   D G DD V KP    E+LAR+ A+ RR  
Sbjct: 61  GLCQRIRQSGCSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRRGN 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V+ N   E   +R+     +     ++  L  +E  +LE  + N    ++++ I   ++ 
Sbjct: 121 VAPNPILEWQQLRLDPSSYEVTYSDQILHLTPKEYGLLELFLRNENLVLSRSAILDNLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             D   EE  V+ HI  LRKKLR      D +++   +GY +
Sbjct: 181 FEDPPSEE-AVKVHIKDLRKKLRKVGAPPDFIETVYGVGYRL 221


>gi|125975548|ref|YP_001039458.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005901|ref|ZP_05430847.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281416559|ref|ZP_06247579.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125715773|gb|ABN54265.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990137|gb|EEU00273.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407961|gb|EFB38219.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939665|gb|ADU73699.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 230

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G S++   +             D+  ++  L   G    
Sbjct: 4   ILIVEDDESIGELLRDYLEINGFSVDICMNGTEGLKRIRDGEYDLLILDIMLP--GMNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR    +P++ +S        +     G DD + KP    E++ARV A   + + 
Sbjct: 62  EILKKIRDEKDIPVLIVSAKKEEFDKIHGLKLGADDYITKPFSPGELVARVNAHIAKYER 121

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N+             + +  D R   V G+   L ++E  +L +L  N  +  ++ +I
Sbjct: 122 LRNKYGNNNVNSITIRGLEIQKDSRRVFVNGKEVNLAQKEFDVLLFLAQNPNRVFSREEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++G+ D   +   V  HI ++R+K+  +      +++    GY +
Sbjct: 182 FDRVWGM-DALGDAATVTVHIGRIREKIESDPSNPQYIETVWGAGYRL 228


>gi|332974891|gb|EGK11804.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 233

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 104/223 (46%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++ DD A ++         +G  + E  + LE  EWL+    E ++ ++  +  K     
Sbjct: 13  LVADDDAHIRKLLRHHLQREGYRVLEAADGLEAAEWLEKEPIE-LAVVDIMMPNK--DGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           +L R IR    +P+I ++    LQ     + +G DD + KP   +E+L R+ A+ RR  +
Sbjct: 70  QLCREIREDYDLPVILLTAKDQLQDKEAGYRAGTDDYLTKPFEPKELLFRIKALLRRYQR 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS +        +     +    G+   LP +E  +L  L +  G+   + ++   ++G 
Sbjct: 130 VSADIIVLNGTAIDRKSYEVRSDGQTLLLPLKEFELLSQLGSYPGRVFTREELIRLVWGP 189

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D A ++  V+ HI +LR++  ++     + + R +GY ++ +
Sbjct: 190 -DFAGDDRTVDVHIKRLRRRFADRAEDFVIQTVRGVGYKLEVS 231


>gi|300024709|ref|YP_003757320.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526530|gb|ADJ24999.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 225

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A           ++G +++                 DV  ++  L   G   L
Sbjct: 3   ILLLEDDANTAAYVSKGLEEEGHTVDHLADGRDAVAQAVGETYDVVILDRMLP--GLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR A  +VP++ ++    +   ++  D+G DD + KP    E+LARV A+ RR  
Sbjct: 61  AIIKEIRSAGRRVPVLFLTALGGVDDRVEGLDAGGDDYLVKPFAFSELLARVNALARRPH 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R + G + +    R     G+   L  RE R+LE LM NRG+ V +T +   ++
Sbjct: 121 TIGEETRLKVGDLEIDLVSRKVTRGGDTIDLQPREFRLLEVLMRNRGRVVTRTMLLERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F    + +VVE+HIS+LR K+      + + + R  GY+++
Sbjct: 181 -SFHFDPKTSVVETHISRLRAKIDKPYDTELIHTIRGCGYTVN 222


>gi|254517943|ref|ZP_05129999.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium sp. 7_2_43FAA]
 gi|226911692|gb|EEH96893.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium sp. 7_2_43FAA]
          Length = 227

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G       SL+      ++   D+  ++  L        +
Sbjct: 6   LIVEDDKSINDILFHTLKAEGYLPHSVFSLKEANDFLNTTLPDLILLDLNLPD--GSGFD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + I A   +P+I ++    +   +   + G DD + KP H +E+ +R+ A++RR++ S
Sbjct: 64  FCKDINAKYTIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFRRIEKS 123

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++           I++  + R      EV  L  +E  +LE+ + NR K  ++ Q+   
Sbjct: 124 ASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSREQLIDN 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+  F    +   V+ HI ++R KL        +++   +GY +
Sbjct: 184 IW-EFSYDGDIRTVDIHIRRIRSKLDTNGHPSVIETVFGVGYMM 226


>gi|172038291|ref|YP_001804792.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171699745|gb|ACB52726.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  230 bits (589), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +    +E  +  E           D+  ++  L       +
Sbjct: 3   ILVVEDDENIVIPIEEYLDEQNYIVEVASDGEVARDFLDVFDYDLIVLDVMLP--KLDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA+  + P++ ++   ++Q  +   D+G DD + KP    E+ AR+ A+ RR +
Sbjct: 61  ALCQQLRANGCKTPILMLTARDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALLRRGE 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       G + V  +  +   Q +   L  +E R+LE+ + +  +  +++Q+   ++ 
Sbjct: 121 TALPPILTWGDLCVDPNTCEVTYQQQALNLSPKEYRLLEFFLRHPRRMFSRSQLLDHLWA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           + D+  EE  V++HIS LR+KL+   L  D +++   LGY +
Sbjct: 181 M-DQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRL 221


>gi|221069740|ref|ZP_03545845.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714763|gb|EED70131.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 270

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++I+D AL            G  +                  DV  ++  L   G   L
Sbjct: 40  YLIIEDDALNARYIAEGLRQQGAHVSVCADGVQGIAQAVGENWDVIILDRMLP-NGFDGL 98

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R+   Q P++ +S   +    +    +G DD + KP    E+ AR+ A+ RR +
Sbjct: 99  QILQALRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 158

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +       +   +RV    R  E  G+   L  RE R+L +LM +  + V +T +  +++
Sbjct: 159 IPAPTREMQVADLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVW 218

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R +GYS+
Sbjct: 219 D-YRFDPQTNVIDVHISRLRSKVDKGFATPLIHTVRGVGYSL 259


>gi|69246942|ref|ZP_00604197.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257878590|ref|ZP_05658243.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257883225|ref|ZP_05662878.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257891845|ref|ZP_05671498.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894788|ref|ZP_05674441.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|258616966|ref|ZP_05714736.1| DNA-binding response regulator [Enterococcus faecium DO]
 gi|260558905|ref|ZP_05831093.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261207266|ref|ZP_05921954.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566153|ref|ZP_06446587.1| DNA-binding response regulator [Enterococcus faecium D344SRF]
 gi|293562898|ref|ZP_06677369.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1162]
 gi|294620288|ref|ZP_06699608.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1679]
 gi|314939253|ref|ZP_07846504.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314942980|ref|ZP_07849787.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948581|ref|ZP_07851958.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314952514|ref|ZP_07855514.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314993100|ref|ZP_07858488.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314995946|ref|ZP_07861027.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68195015|gb|EAN09480.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257812818|gb|EEV41576.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257818883|gb|EEV46211.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257828205|gb|EEV54831.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257831167|gb|EEV57774.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260075084|gb|EEW63398.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260078481|gb|EEW66184.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289162014|gb|EFD09880.1| DNA-binding response regulator [Enterococcus faecium D344SRF]
 gi|291593478|gb|EFF25032.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1679]
 gi|291605150|gb|EFF34613.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1162]
 gi|313589870|gb|EFR68715.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592408|gb|EFR71253.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313595383|gb|EFR74228.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313598277|gb|EFR77122.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313641438|gb|EFS06018.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644994|gb|EFS09574.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 238

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 103/237 (43%), Gaps = 23/237 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   V +     F ++G       +G   L+   +L++    D+  ++  L    
Sbjct: 3   ILMIEDNQSVSEMMQMFFLNEGWEATFKYDGKEGLDA--FLENPQHWDMITLDLNLPT-- 58

Query: 58  EKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              + + R IR   S VP+I ++   S    +   + G DD V KP     ++AR+ A++
Sbjct: 59  LDGMLVGREIRKVSSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALH 118

Query: 117 RRLKVSNNR-----------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANR 164
           RR +++  R            ET   ++ +  R+  +       L  +E  +L  L    
Sbjct: 119 RRSELAEAREEAVVSDDHFDIETSHFKMNTKTREAYLDNRPIEGLTPKEFDLLFTLAKKP 178

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 179 RQVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 233


>gi|260906859|ref|ZP_05915181.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 226

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G   E F     ++      + +   +   L+  G+  L
Sbjct: 5   ILVVDDDTALAEMIGIVLKSEGF--EPFFCATGDQAFDEFQKVNPDLVLLDLMLPGKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        +   +SG DD V KP   +E++ARV A  R  + 
Sbjct: 63  EVCREIREISSVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELIARVRARLRISEP 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + V   G      G    L   E  +L  L     +  ++  +   ++G 
Sbjct: 123 QAPELLTVGDVVVDVAGHTVTKGGSPISLTPLEFDLLVALARKPWQVFSRETLLEEVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+       D + + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRSKIERDPEKPDIIVTVRGVGYK 221


>gi|71899946|ref|ZP_00682093.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71730309|gb|EAO32393.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 231

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D                +     + + +    D+  ++  L   G   LE
Sbjct: 6   LIVDDEVAIRDMVAYALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLP--GTSGLE 63

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  R  S   ++P+I ++        +   ++GVDD + KP   RE+LAR+ A+ RR 
Sbjct: 64  LTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRRT 123

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +     G +R+              P+   E R+L + M +  +  ++TQ+   +
Sbjct: 124 RDDEEDGSVAIGKLRIDGAAHRVYAGHVQVPIGPTEYRLLHFFMTHSERVYSRTQLLDHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  ++ HI +LR+ L      D V + R  GY  
Sbjct: 184 WGSG-VYIEERTIDVHIRRLRRTLEPFGLDDMVQTVRSAGYRF 225


>gi|260752408|ref|YP_003225301.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551771|gb|ACV74717.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 231

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +     F      +      +    L      D+  ++  +  +G   +
Sbjct: 6   LLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMV--EGTSGI 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R     + +P+I ++        +   ++G DD V KP   RE++ARV A+ RR
Sbjct: 64  EVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++   S  +     I +       +  G    +   E R+L +LM    +  ++ ++   
Sbjct: 124 IRPALSKEQLTYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDY 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+G  D  +E   V+ HI +LRK L      D + + R  GY++D
Sbjct: 184 IWGQ-DSDIELRTVDVHIRRLRKALNRDGLPDLIRTVRSAGYALD 227


>gi|15614371|ref|NP_242674.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174426|dbj|BAB05527.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 231

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D        +G  +      + +E +    R+ +  +   ++       
Sbjct: 6   ILVADDEQEIRDLIAIHLEKEGYHV--IKVSDGKEAVDVIGRQVIDLLILDIMMPNIDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR K 
Sbjct: 64  EVARQIREQHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFAPIELVARVNAQLRRFKK 123

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N          E G + +  + R   + GE   L  +E  IL  L ++  K  +   IF
Sbjct: 124 LNQPKPDRITTLEFGGLVIAPEQRKVTLYGETIELTPKEFEILYLLASHPKKVYSVENIF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G        N V  H+  LRKKL++       + +   +GY+ +
Sbjct: 184 HQVWGEAYFEGG-NTVMVHVRTLRKKLKDDQRKSKWIKTVWGVGYAFN 230


>gi|332669109|ref|YP_004452117.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338147|gb|AEE44730.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 238

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 102/236 (43%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D    ++        +G  +    + +  + ++         +   L+  G    
Sbjct: 4   ILLVEDEESYREPLTYQLEREGYEV--VAAADGLQAIELFEEHGADLVLLDLMLPGLPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +   + G DD V KP   RE+LAR+ A+ RR + 
Sbjct: 62  EVCRRLRLTSDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARMRAVLRRREA 121

Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                           +    +GP+ +  D    +V+GE+   P +E  +LE L+ N G+
Sbjct: 122 AVVAGAGAPAPVLDEEDGLLVSGPVEMDVDRHTVKVRGELVAFPLKEFDLLEMLLRNAGR 181

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            + + Q+   I+G  D   +   ++ H+ ++R K+  +      + + R LGY ++
Sbjct: 182 VLTRGQLIDRIWG-SDYVGDTKTLDVHVKRVRAKIEADPANPTLLLTVRGLGYKLE 236


>gi|288555025|ref|YP_003426960.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288546185|gb|ADC50068.1| two component transcriptional regulator, winged helix family
           protein [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G   +     E           D   ++  L        E
Sbjct: 9   LIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP--KIDGWE 66

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + IR  + ++P+I ++     Q  +   D G DD V KP    E++AR+ A+ RR  +
Sbjct: 67  LCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADL 126

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N+  +      + V           +   +P +E  +L YL +   +   + Q+   I+
Sbjct: 127 LNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +    +   ++ HI ++R+KL        + + R +GY  
Sbjct: 187 G-YAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKF 227


>gi|238028504|ref|YP_002912735.1| DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237877698|gb|ACR30031.1| DNA-binding response regulator [Burkholderia glumae BGR1]
          Length = 225

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     E           D+  ++  L  +    +
Sbjct: 8   ILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLPKR--DGV 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R  RA    +P++ I+   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  EVLRTARARGHALPVLIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRALIRRQA 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 126 GRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 186 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 221


>gi|21223649|ref|NP_629428.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256785237|ref|ZP_05523668.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289769129|ref|ZP_06528507.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|9909919|emb|CAC04498.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289699328|gb|EFD66757.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 244

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 21  LVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLP--GFDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 79  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 138

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 139 VVAASTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 198

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 199 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 240


>gi|13473197|ref|NP_104764.1| phosphate regulatory protein, PhoB [Mesorhizobium loti MAFF303099]
 gi|260461553|ref|ZP_05809800.1| two component transcriptional regulator PhoB, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|319781154|ref|YP_004140630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|14023945|dbj|BAB50550.1| phosphate regulatory protein; PhoB [Mesorhizobium loti MAFF303099]
 gi|259032623|gb|EEW33887.1| two component transcriptional regulator PhoB, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|317167042|gb|ADV10580.1| phosphate regulon transcriptional regulatory protein PhoB
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 229

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E     +  E        D+  ++  +       +
Sbjct: 6   IMVVEDEEPLGVLLRYNLESEGYQVEVVTRGDEAEIRLQENVPDLLVLDWMVPAV--SGI 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R +R   +    P+I ++        +    +G DD + KP    E +ARV A+ RR
Sbjct: 64  ELCRRLRMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFMARVKALLRR 123

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K    ++  + G I +  +      +     L   E R+LE++M + G+  +++Q+   
Sbjct: 124 AKPEVLSSVLKVGDIVLDRESHRVYRKKSEIRLGPTEFRLLEFMMRHPGRVFSRSQLLDN 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     ++E  V+ H+ +LRK + N    D + + R  GY+I
Sbjct: 184 VWGET-IYIDERTVDVHVGRLRKAVNNGRMPDVIRTIRGAGYAI 226


>gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 271

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +G  +      +    L      DV  ++  L       LE
Sbjct: 26  LVVDDEPNLAELLTSALRYEGWDVSTALDGQTAVRLARETVPDVIVLDIMLGD--IDGLE 83

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR   + VP++ ++   S++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 84  VLRRIRQQQEGVPVLFLTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRRAGA 143

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S  R E     G + +  D  + +  G+   L   E  +L YLM N  + ++K+QI   +
Sbjct: 144 SAARDEARLVVGDLTLDEDSHEVDRAGQEIHLTATEFELLRYLMRNARRVMSKSQILDRV 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE +IS LR+K+ +      + + R +GY +
Sbjct: 204 W-QYDFGGQANIVELYISYLRRKI-DAGREPMIHTLRGVGYVL 244


>gi|256059803|ref|ZP_05449998.1| response regulator receiver [Brucella neotomae 5K33]
 gi|261323783|ref|ZP_05962980.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261299763|gb|EEY03260.1| two component transcriptional regulator [Brucella neotomae 5K33]
          Length = 227

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 133/225 (59%), Positives = 166/225 (73%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F  GVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQFGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIF A
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFRA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|255017072|ref|ZP_05289198.1| hypothetical protein LmonF_03388 [Listeria monocytogenes FSL
           F2-515]
          Length = 220

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 12/211 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      +    L    + D+  ++  L   G   +
Sbjct: 6   ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLP--GRDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P+I ++   S    +   + G DD V KP  +RE++ARV A  RR   
Sbjct: 64  EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++           E G + +  D      +GE   L  RE  +L YL  + G+ + +  
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           +   ++G +D   +   V+  + +LR+K+ +
Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 213


>gi|196042673|ref|ZP_03109912.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225865148|ref|YP_002750526.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196026157|gb|EDX64825.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225786004|gb|ACO26221.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 224

 Score =  230 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GINGLQ 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 220


>gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 242

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 103/228 (45%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--AREDVSAIEAFLIGKGEK 59
            +++DD A ++          G  +    + + EE L++   A  D+  ++  +      
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDV--VTAGDGEEALETFRKANPDLVVLDVMMP--KLD 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+
Sbjct: 64  GYGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRV 123

Query: 120 K-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++
Sbjct: 124 DKNGTTGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSE 183

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           I   ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 184 ILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041]
 gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041]
          Length = 229

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   E  ++ + +E L       D++ +   L+      
Sbjct: 3   ILVVDDDKEIVQLLEIYIRNEGY--EPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S +P++ +S   +    +    SG DD V KP +  E++ARV ++ RR +
Sbjct: 61  MEVIKQIRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTQ 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    GP+ +  D  +   ++G+V  L   E  IL  L ++  +  +   IF
Sbjct: 121 GEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ++
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227


>gi|126665480|ref|ZP_01736462.1| response regulator DrrA [Marinobacter sp. ELB17]
 gi|126630108|gb|EBA00724.1| response regulator DrrA [Marinobacter sp. ELB17]
          Length = 233

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +       D G++    N    ++ L    +  +  +   L+  G   L 
Sbjct: 6   LIIEDNPAIAELVSMQVSDLGMAPVLAN--RGDDGLARFRQGGIDLVVLDLMLPGLDGLA 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R IR     VP++ ++   +    +   + G DD + KP    E+ AR+ A++RR+  
Sbjct: 64  VCREIRTAPDYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELGARIKALFRRVDA 123

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N       +R+    R   V      L  RE  +L +  ++RG+  ++ Q
Sbjct: 124 LSARATDAPENREIAVDGLRIDPLRRRVFVNNAEVELTAREFDLLWHFASHRGRVFSRAQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  A++G ++    E+ V +HI++LR K+  +      V +   +GY  
Sbjct: 184 LLDAVWG-YNHQGYEHTVNTHINRLRNKIETDPAEPRYVQTVWGVGYRF 231


>gi|329928077|ref|ZP_08282039.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp.
           HGF5]
 gi|328938068|gb|EGG34466.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp.
           HGF5]
          Length = 239

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 19/232 (8%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD   +++   A    +G    G  + E    +  +   D+  ++  L   G   
Sbjct: 6   LIAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIMLP--GMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
            EL R IRA ++VP+I IS   S    +   + G DD + KP   RE++AR+        
Sbjct: 64  FELCRRIRAEAEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSRWY 123

Query: 118 ---------RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                    RL  ++     G +++  + R     GE   +  +E  +L     +  +  
Sbjct: 124 KFNHAEHVPRLAAASPELSNGRLQLLLEERRVFWNGEEVDMTNKEFEMLRVFAEHPNRAF 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++ ++++G  D    +  V+  I +LRKK+       P+++    GY +
Sbjct: 184 TRDELLTSVWG-DDYFGSDRAVDHLIKRLRKKVEQL----PIEAIWGHGYRM 230


>gi|323484018|ref|ZP_08089390.1| response regulator [Clostridium symbiosum WAL-14163]
 gi|323693384|ref|ZP_08107598.1| response regulator [Clostridium symbiosum WAL-14673]
 gi|323402659|gb|EGA94985.1| response regulator [Clostridium symbiosum WAL-14163]
 gi|323502533|gb|EGB18381.1| response regulator [Clostridium symbiosum WAL-14673]
          Length = 227

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 90/223 (40%), Gaps = 3/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +      L   +G ++    +      + +    D++ ++  L        
Sbjct: 4   IFLVEDDKAIAKNLTLLLRSEGFTVSHAATRGEASAMLAGNLFDLALVDIALPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+   Q+P++ ++      + +   + G DD + KP   RE++AR+ A  R+ + 
Sbjct: 62  TVCTEIKERYQIPVLFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRAALRKQER 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    E   + V +        G    L   E R+L   M N    + ++++   ++   
Sbjct: 122 AGQAFEVCGLCVDTASGVVTKYGREIFLSALEYRLLLIFMNNPKNIITRSRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            E V +N +  +I +LR+K+  +      + + R  GY +  N
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENDPANPQIILTVRGTGYRLGGN 224


>gi|319784552|ref|YP_004144028.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170440|gb|ADV13978.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 241

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D     F + G +       E    L  +   DV  I+  +  +    L
Sbjct: 20  ILVIEDDREAADYLQKAFAEAGHTAHVAGDGETGFALADAGDYDVMVIDRMMPRR--DGL 77

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +R+     P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 78  SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 137

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +               L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 138 AKEAETVYRVGDLELDRLSHSVRRASREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY +
Sbjct: 198 D-YHFDPQTNVIDVHVSRLRGKIEKGFDKPILHTVRGAGYML 238


>gi|284921875|emb|CBG34950.1| two-component response regulator [Escherichia coli 042]
          Length = 239

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 19  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYSF 234


>gi|255262515|ref|ZP_05341857.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thalassiobium sp. R2A62]
 gi|255104850|gb|EET47524.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thalassiobium sp. R2A62]
          Length = 229

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        +G  +      E    L      DV  ++  L       +E
Sbjct: 9   LVVEDEPAQREVLAYNLEAEGFIVRIAEDGEEALMLIDEVAPDVIVLDWMLPNV--SGIE 66

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R  +   A   +P+I +S        +   ++G DD V KP    E++ARV    RR+
Sbjct: 67  VCRQTKTKAATRNIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRTHLRRV 126

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +        G I + S+            L   E ++L   M   G+  ++  +   +
Sbjct: 127 RPTTMGQVLVYGDITLDSETHRVTRGEHPIKLGPTEFKLLASFMEKPGRVWSRDLLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  +  V+   V+ H+ +LRK L    G DP+ + R  GY++
Sbjct: 187 WGR-EIYVDTRTVDVHVGRLRKALNQFGGDDPLRTIRGAGYAL 228


>gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 242

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L +  + D   +   ++       
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDV--VTAGDGEEALDTFRKSDPDLVVLDVMMPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|284052127|ref|ZP_06382337.1| two component transcriptional regulator, winged helix family
           protein [Arthrospira platensis str. Paraca]
          Length = 227

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +G +++          L  +   D+  ++  L  +    L
Sbjct: 3   ILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQ--SGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+   +R   ++ P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  EICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V++NR + G ++   + +      +   L  +E ++LEYLM + G+ +  T+I  
Sbjct: 121 ILDSTVTSNRLQFGDLQFDCETQLAYRGQKAIELSEKESQLLEYLMRHPGQLLTHTEIHQ 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D+    NV+ + I  LR+K+        V +    GY  
Sbjct: 181 HLWGETDKKPSSNVLAAQIRLLRRKIELPGAVPLVHTVYGKGYRF 225


>gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 246

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 104/226 (46%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L+   ++D   +   ++       
Sbjct: 9   ILVVDDEASIRRILETRLSMIGYDV--VTASDGEEALEVFHKQDPDLVVLDVMMPKLDGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 67  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+   + G IR+ ++ R    + E   L   E  +LE L++  G+  ++++I 
Sbjct: 127 SAHDGIPSSGVIQVGDIRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 186

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 232


>gi|313632601|gb|EFR99591.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
           N1-067]
 gi|313637138|gb|EFS02678.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
           S4-171]
          Length = 238

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 99/231 (42%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   +E   + + +E L  +   +   I   L+  G+  +E
Sbjct: 8   LVVDDEDRIRRLLKMYLERENYRIE--EASDGDEALDMALNNNYEVILLDLMMPGKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R +   P++ ++        +  F+ G DD + KP   RE++ RV A+ RR K +
Sbjct: 66  VCRELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQT 125

Query: 123 NNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +                +++ ++     V+G+   L  +E  +L YL  +  K   +  +
Sbjct: 126 SEEGASGAPGDIITFPHLKIDNEAHRVIVEGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222
              ++  ++   +   +++H+ +LR+KL +        + +   LGY  + 
Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLFDVSEDAARMIVTVWGLGYKFEV 235


>gi|193066637|ref|ZP_03047672.1| heavy metal response regulator [Escherichia coli E22]
 gi|293446346|ref|ZP_06662768.1| transcriptional regulatory protein YedW [Escherichia coli B088]
 gi|298381094|ref|ZP_06990693.1| two-component system response regulator YedW [Escherichia coli
           FVEC1302]
 gi|81244982|gb|ABB65690.1| putative 2-component transcriptional regulator [Shigella boydii
           Sb227]
 gi|192925712|gb|EDV80371.1| heavy metal response regulator [Escherichia coli E22]
 gi|291323176|gb|EFE62604.1| transcriptional regulatory protein YedW [Escherichia coli B088]
 gi|298278536|gb|EFI20050.1| two-component system response regulator YedW [Escherichia coli
           FVEC1302]
          Length = 239

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 19  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234


>gi|298247083|ref|ZP_06970888.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549742|gb|EFH83608.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 227

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +          +G  +      + E+ L +  R  V  +   ++  G    +
Sbjct: 6   LIVDDDAAIAHLLRDFLKAEGFQVMVAT--DAEKALDTVQRTSVDCLVLDVMMPGRSGFD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           L R IR  S +P++ +S Y S +  L  F  G DD + K     E++ARV A+ RR    
Sbjct: 64  LCRHIRETSNLPILFLSAYDSDKEKLRGFGLGGDDYIAKSASPSEVVARVKAVLRRCQKE 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K S++    G + +     +  ++G+  P   RE  +L +   +  +   + Q+F   +G
Sbjct: 124 KPSSSMFNFGRLVIDPVAHEVLIEGQPLPFTTREFALLCFFAEHPRQVFTREQLFERFWG 183

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              E  +   V  HI ++R+K+ R+      + + R  GY  +
Sbjct: 184 ---EIGDRQTVTVHIRRIREKIERDPADPHYIITVRGTGYRFE 223


>gi|291613481|ref|YP_003523638.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
 gi|291583593|gb|ADE11251.1| two component transcriptional regulator, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 222

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D AL+ D   A     G +++        +   S+     + ++  L       L
Sbjct: 3   ILVIEDDALLGDAIQAGLKQSGYAVDWMKDGVSADQALSTEAYAAAVLDLGLPR--MSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +R+ +  +P++ ++   +++  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLQRLRSRNTPIPVLILTAMDTVEDRIKGLDAGADDYLVKPFDMGELAARLRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   + +         +     LP +E  +L  LM N G+ +++TQI   +Y 
Sbjct: 121 GKPAPALQVAGVEMEPAAHRVLYRNSAIELPAKEFAVLHALMLNAGRVLSRTQIEEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E VE N VE +I  LR+KL      + +++ R +GY I
Sbjct: 180 AWGEEVESNAVEVYIHHLRRKL----FPELIETIRGVGYLI 216


>gi|161075795|gb|ABX56645.1| DNA binding copper response regulator [Methylacidiphilum infernorum
           V4]
          Length = 223

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         ++G +++  +  +    +  +   D + ++  L   G   + 
Sbjct: 4   LVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLP--GPDGIS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     +P++ +S     +  ++  +SG DD + KP    E++AR+ A+ RR   
Sbjct: 62  VLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTAG 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  + G + +    R+     +   L  +E  ILE LM   G+   +TQ+   ++  
Sbjct: 122 IGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +      N+V+ +I KLRKK+        + + R +GY I+
Sbjct: 181 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIE 221


>gi|118443383|ref|YP_877594.1| two-component response regulator [Clostridium novyi NT]
 gi|118133839|gb|ABK60883.1| two-component response regulator [Clostridium novyi NT]
          Length = 222

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++      F   G S+    + +  + L+      V  +   ++       
Sbjct: 3   ILIIEDEERMRKLLKDYFKRSGFSV--LEAEDGVKGLKVFKENSVDLVILDIMIPCLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR +S+VP+I ++     +  L  ++ G DD V KP   + ++A+V A+ +R  +
Sbjct: 61  TVCKSIRQNSKVPIIMLTAKSEEEDKLLGYELGCDDYVTKPFSPKVLVAKVKALLKRSGI 120

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N      + +     + ++ GE+  L  +E  +L + + N    +++  I   ++
Sbjct: 121 EEKETNIKNYNGLYINKLSNEVKIHGEIVNLSPKEYDLLIFFVNNIDIVLSRDTILDKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD       V++H+ +LR+KL+ K   + + + R  GY  + 
Sbjct: 181 G-FDYDGGLRTVDTHVKRLREKLKEK--SNYIVTVRGKGYKFEV 221


>gi|300811605|ref|ZP_07092085.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497400|gb|EFK32442.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 242

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 98/233 (42%), Gaps = 19/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +E   + + EE ++     +   +   L+   +  L
Sbjct: 5   ILVVDDEKPISDIIKFNLTKEGFDVE--TAYDGEEAVEKVEEYNPDLMILDLMLPKKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P+I ++        +   + G DD V KP  +RE++ARV A  R    
Sbjct: 63  EVAREVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122

Query: 120 -------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                        +  +N  + G + +  D    E  GE   L  RE  +L Y+  +  +
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218
            + +  +   ++G +D   +   V+  + +LR+K+ +      +  ++R +GY
Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234


>gi|148266303|ref|YP_001233009.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146399803|gb|ABQ28436.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 224

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++   +   +  E    +      D+  ++  L  +    L
Sbjct: 3   ILVVEDEKKVLSFIKRGLEEEQYEVLTASDGEEGLKMALDMPYDLIILDWMLPKQ--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++   S++  +   DSG DD + KP    E+LARV A+ RR +
Sbjct: 61  SVLKELRNQKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      +R+         + +   L  +E  +LEY M N  + + +T I   ++ 
Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ +++ LRKK+        + + R +GY +
Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDRDADKKLIHTVRGVGYIL 220


>gi|85715363|ref|ZP_01046345.1| two component transcriptional regulatory protein [Nitrobacter sp.
           Nb-311A]
 gi|85697784|gb|EAQ35659.1| two component transcriptional regulatory protein [Nitrobacter sp.
           Nb-311A]
          Length = 223

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +         D G  ++     E   +L  S   D   ++  L    G  V
Sbjct: 3   LLVVEDDPDLNRQLATALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  R  R    +P++ ++        +  FD+G DD V KP H  EILAR+ A+ RR  
Sbjct: 63  LEAWR--RGGRTMPVLILTARDRWSDKVQGFDAGADDYVTKPFHLEEILARMRALLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELTCGPVTLDTRTGRVSVGGNPIKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 216


>gi|255524384|ref|ZP_05391341.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187507|ref|ZP_06855902.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511941|gb|EET88224.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048029|gb|EFG87468.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 226

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 101/225 (44%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE---EWLQSSAREDVSAIEAFLIGKGE 58
            +++DD   ++        D  +  EGFN L+ E   + L+      V  +   ++    
Sbjct: 5   ILIVDDEERMR-----FLIDAYLKKEGFNVLQAENGKDALKIFKENTVELVVLDIMMPVM 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
                 + IR  SQVP+I ++     +  +  F+ G D+ V KP   + ++A+V A+ +R
Sbjct: 60  DGWTTCKEIRKISQVPVIMLTAKAEDEDQILGFELGTDNYVTKPFSPKLLVAKVKALLKR 119

Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                N  +     + +     + ++  E   L  +E  +L Y   N+G  +++ QI  +
Sbjct: 120 AYPDENNQDNFFDGLYINEKAHETKINDEDIYLSPKEFELLSYFAKNKGMVLSREQILDS 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G+ D   +   V++HI +LR+KL  K     + + R  GY  +
Sbjct: 180 VWGI-DYYGDLRTVDTHIKRLREKLGEKAY--LISTVRGTGYKFE 221


>gi|253583326|ref|ZP_04860524.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
 gi|251833898|gb|EES62461.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
          Length = 221

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G S++     E    L      D+  ++  +        
Sbjct: 4   ILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLDLFFQTTYDIVILDIMMP--KIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  SQVP+I ++        L  F+   D+ + KP + + ++A+V A+ RR   
Sbjct: 62  SVCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V     E G + + +  R+ ++   +  L  +E  +L + + N+G  +++ +I ++++G
Sbjct: 122 IVDKTYLEFGDLIIDTSKREVKLGDVILELTPKEYDLLYFFIENKGLALSREKILNSVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LRKK+    G + + + R  GY  +
Sbjct: 182 -WDYFGDSRTVDTHIKRLRKKI----GDNFIQTVRGFGYKFE 218


>gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 228

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +    L+    LQ++  +D   I   L+      +
Sbjct: 4   ILIIEDEENLAKFVEMELKHEGYETDV--ELDGRAGLQAALNQDFDLILLDLMLPELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R     P+I ++   S+   +  FD G DD + KP    E+LARV A+ RR+  
Sbjct: 62  EVARRVRELKNTPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALLRRINI 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K      +   + +  + R      EV  L +RE  +L  LM N    +++ ++ 
Sbjct: 122 EDSSNKEHQTTVQYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|225376300|ref|ZP_03753521.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
           16841]
 gi|225211946|gb|EEG94300.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
           16841]
          Length = 227

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 105/224 (46%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD + ++         +   +    + + EE L    +E +++ I   ++      
Sbjct: 6   ILVVDDESRMRKLVRDFLVREDYEV--LEAGDGEEALDIFYKEKNIALIILDVMMPKING 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R +R  S+VP+I ++        L  F+ GVD+ ++KP   + ++ARV A+ RR  
Sbjct: 64  WDVCREVRETSKVPIIMLTAKSDESDELTGFELGVDEYISKPFSPKILVARVNALLRRSG 123

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++        E G I++        V G    L  +E  +L+Y M N+G  +++ +I + 
Sbjct: 124 LTAGNDEKFVEAGGIKLDKTAHLVTVDGRPIELSIKEFELLDYFMENQGIALSREKILNN 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   +   +++H+ KLR K+  K   + + +   +GY  
Sbjct: 184 VWN-YDYFGDARTIDTHVKKLRAKIGEKG--EYIKTIWGVGYKF 224


>gi|170769433|ref|ZP_02903886.1| heavy metal response regulator [Escherichia albertii TW07627]
 gi|170121757|gb|EDS90688.1| heavy metal response regulator [Escherichia albertii TW07627]
          Length = 223

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 104/219 (47%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   + P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKKTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  ++         L R+E ++L  L +  G+ + +T I S ++G+ 
Sbjct: 121 LNSTLEISGLKMDSVSQNVSRDNVNITLTRKEFQLLWLLASRAGEIIPRTVIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS+
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFNEKLIATIRGMGYSL 218


>gi|148825749|ref|YP_001290502.1| transcriptional regulatory protein [Haemophilus influenzae PittEE]
 gi|148715909|gb|ABQ98119.1| transcriptional regulatory protein [Haemophilus influenzae PittEE]
          Length = 221

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L       L
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLP--KLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           E+ +  R+ H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A+  RR 
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFTLAEVAARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E   +++  + R   +  +   L  RE ++LE  M N+ + ++++ I   +  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKL-S 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 216


>gi|229114545|ref|ZP_04243960.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228668895|gb|EEL24322.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 224

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++G  +        S A  D+  ++  +       L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPR--IDGLQ 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGEQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|323142466|ref|ZP_08077286.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413043|gb|EFY03942.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp.
           YIT 12067]
          Length = 232

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 16/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++ DD   +          +G     +L+G  +L+  ++LQ      V  ++  +     
Sbjct: 5   LIADDNKQITTILSGYAKKEGFEPVVALDGAEALD--KYLQYEHEIAVVLLDVMMPE--I 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R +R  S VP+I I+        +   D G DD V KP    E++ARV A+ RR
Sbjct: 61  DGFEVCRRLRKESMVPIIMITARGEDYDKIMGLDIGADDYVIKPFSAPEVMARVRAVLRR 120

Query: 119 LKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           L               + +  +    ++ GE   L ++E  +L  L  N  K  ++  + 
Sbjct: 121 LGAQEPANAQTLSYANLYINLEKYAVQINGEDVALTKKEIELLWTLAKNSTKVFSRDNLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
            +I+G +D   +   V+SHI +LR KL +K       + +   +GY  +
Sbjct: 181 DSIWG-YDYFGDSRTVDSHIKRLRAKL-DKYEHPLWEIKTIWGVGYRFE 227


>gi|254255648|ref|ZP_04948964.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901385|gb|EAY72135.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 286

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   ++ +  + L+   +    A+   L+  G   L
Sbjct: 54  ILIVEDDADIADVLSLHLRDERYEV--VHTADGAQGLRLLEQGGWDALILDLMLPGVDGL 111

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 112 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 171

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 172 ALARDSRIDAGTLDVAGLSIDPIAREASVDGMRIDLTPREFDLLYFFARHPGKVFSRMDL 231

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 232 LNAVWG-YQHEGYEHTVNTHINRLRAKIETDPAEPARILTVWGRGYKL 278


>gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
 gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
          Length = 233

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +        + E  E        D+  ++  L   G   +
Sbjct: 6   ILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLP--GMDGI 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  + IR +S     P++ ++        ++ FD G DD + KP   +E++AR+ AI RR
Sbjct: 64  DFLKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAILRR 123

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K      + + G ++V  D  +   Q +   L   E ++L  L  N+ + +++  I   
Sbjct: 124 KKPDFFPKQIKHGNLQVHPDSHEVFHQSKFIKLGPTEFKLLYLLCMNKNRVLSREIIVDK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+   +  ++   ++ H+ +LR  L++    + +++ R  GY +
Sbjct: 184 IWNN-ESEIDARTIDVHVKRLRSTLKSHGIENSIETIRGAGYKL 226


>gi|226943549|ref|YP_002798622.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226718476|gb|ACO77647.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 226

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +               E          L      D+  ++  L   G   L
Sbjct: 6   ILVVEDEPKLAALIGDYLRAADFQAETLADGLRVIPLLRRQPHDLVILDLMLP--GRDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S+VP+I ++        L   ++G DD + KP   RE++ARV A+ RR   
Sbjct: 64  DICRELRGFSRVPVIMVTARVEEIDRLLGLETGADDYLCKPFSPRELVARVKAVLRRSGK 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    +            G    L   E R+L+ L+A  G+ + + Q+ + +Y   
Sbjct: 124 PPP---LPGLLTDPASYRAYCNGIPLDLTPVEFRLLDALLARPGQALTREQLMNHLY-ED 179

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
              V +  V+SH+  LR+KL+    G DP+ S   +GY ++W
Sbjct: 180 HRIVTDRTVDSHVKNLRRKLQQAAPGEDPIRSIYGVGYCLEW 221


>gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 241

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +           L ++ + D+  ++  L        
Sbjct: 12  LLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEKPDLVILDVMLPD--MDGF 69

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA    +P++ ++    ++  ++   +G DD V KP    E++AR+ AI RR K
Sbjct: 70  TVTRKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 129

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S           + +  +  +    G +  L   E ++L YLM N G+ V+KTQI   +
Sbjct: 130 RSAVEQPLLRVADLELDDNLYEVHRGGRLIDLSPTEFKLLRYLMVNEGRVVSKTQILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-----FDPVDSKRFLGYSI 220
           +  +D   +  +VES+IS LR+KL             + ++R +GY +
Sbjct: 190 W-EYDWEGDAAIVESYISYLRRKLDAPDETGSIPPSLIQTRRGVGYLL 236


>gi|11467627|ref|NP_050679.1| Ycf27 [Guillardia theta]
 gi|6136611|sp|O78428|YCF27_GUITH RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|3602952|gb|AAC35613.1| ompR homolog [Guillardia theta]
          Length = 254

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++          G  +   +  E    L      DV  ++  +         
Sbjct: 18  LIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMP--KLDGYG 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I ++    +   +   + G DD V KP   +E+ AR+ A+ RR   +
Sbjct: 76  VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +       + +  + R      E   L   E  +LE L++  G+  ++  I 
Sbjct: 136 AFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADIL 195

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL  +    D + + R  GY
Sbjct: 196 QEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGY 241


>gi|315647246|ref|ZP_07900359.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277448|gb|EFU40777.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 232

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     +    D   ++  +  E    L  S + D+  ++  L       +
Sbjct: 5   ILLVEDDHDIHQLIESQLQQDHYHVDSAHDGEEAVALFHSGKFDLILLDLMLP--KINGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L R  R  S+VP++ IS   S          G DD ++KP    E+ ARV A  RR   
Sbjct: 63  DLLRHFRESSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             + +       +V+G   PL  +E  IL+ LM N  +   K Q
Sbjct: 123 YAETDSKSAEPPVISFKDLILDLHSFSVKVRGHHVPLTSKEFHILKLLMTNHSRVFTKEQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I+  I+   D    ENV+  HI +LR+K+         + +   +GY +
Sbjct: 183 IYQFIW-EDDYYGNENVINVHIRRLREKIEEDPSTPQYIRTIWGIGYKM 230


>gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 105/228 (46%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD A ++          G  +    + + EE L++  +A  D+  ++  +      
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYEV--VTAADGEEALETFRTAEPDLVVLDVMMP--KLD 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+
Sbjct: 68  GYGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRV 127

Query: 120 K-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +        S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++
Sbjct: 128 EKNGAPGIPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSE 187

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           I   ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 188 ILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 235


>gi|256847496|ref|ZP_05552942.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256716160|gb|EEU31135.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 228

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +    L+    L+++  ED   I   L+      +
Sbjct: 4   ILIIEDEENLANFVNLELKHEGYETDV--ELDGRAGLEAALNEDFDVILLDLMLPELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR+ +
Sbjct: 62  EVARRVREEKNTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       +   + +  + R      EV  L +RE  +L  LM N    +++ ++ 
Sbjct: 122 EDGNNNNHQTTVKYQDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRQELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDAKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|161986515|ref|YP_310926.2| transcriptional regulatory protein YedW [Shigella sonnei Ss046]
 gi|323168911|gb|EFZ54591.1| transcriptional activator protein irlR [Shigella sonnei 53G]
          Length = 223

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|78043342|ref|YP_361360.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995457|gb|ABB14356.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 236

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     +    +G  +    +    E L S  +E    I    +      +
Sbjct: 5   ILIVDDEPKIVTMVKSYLLKEGYEV--ITAFNGREALNSFYKEKPDLIVLDWMMPEMSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQ+P+I ++        L  F+ GVDD V KP   RE+ AR+  I +RL+ 
Sbjct: 63  EVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEA 122

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                E     G + ++   R+  ++G+   L   E ++LE  + N GK  ++ ++    
Sbjct: 123 KTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYA 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G       E  +++HIS LRKK+  +    + + +   +GY +
Sbjct: 183 IGEA-YEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKL 225


>gi|298290736|ref|YP_003692675.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927247|gb|ADH88056.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +    +    D G +++     E   +L  +   D   ++  L    G  V
Sbjct: 3   LLVVEDDPDLNRQMVEALTDAGYAVDRAYDGEEGHFLGETEPYDAIVLDIGLPKMDGLSV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R  R   ++P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 63  LEAWR--REGRKMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAASELTCGPVMLDTRSGRVTVDGRQVKLTSHEHRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL      + + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKLD----VEVIQTVRGLGYLL 216


>gi|259418415|ref|ZP_05742333.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
 gi|259345810|gb|EEW57654.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
          Length = 230

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 21/227 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE--GFNSLEFEEWL-----QSSAREDVSAIEAFLI 54
            +++DD   +           G ++E  GF +L   + L     Q     D+  ++  L 
Sbjct: 5   ILVVDDDPDI-------LEVTGFAVEKAGFETLFASDGLAAINAQQQEDPDLIVLDIGLP 57

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                 LE+ R IR  S+VP++ ++        +   + G DD + KP   RE++AR+ A
Sbjct: 58  E--MDGLEVCREIRKISEVPILFLTARDEEIDRILGLELGADDYLTKPFSPRELVARIKA 115

Query: 115 IYRRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           I +R     K S+     G + + ++            L   E R+L  LM      + +
Sbjct: 116 ILKRSVSAPKPSDAAVIHGALHLDAERHQCTFNDTSVSLTGSEFRLLATLMIRPDHVLTR 175

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
            Q+  A+YG ++  V +  ++SHI  +R KL      + + +   +G
Sbjct: 176 AQLVDALYG-YNIHVSDRTIDSHIRNIRAKLSQAGCVEGIVTVHGVG 221


>gi|254731635|ref|ZP_05190213.1| Protein petR [Brucella abortus bv. 4 str. 292]
 gi|260759394|ref|ZP_05871742.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260669712|gb|EEX56652.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
          Length = 227

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 134/225 (59%), Positives = 167/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFD +DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDLIDSKRFLGYCIN 225


>gi|289178766|gb|ADC86012.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 246

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +                   D+  ++  L       +
Sbjct: 21  ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPV--MDGI 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + I A   +P++ ++        +     G DD ++KP   RE++ARV A+ RR+  
Sbjct: 79  EATKRIEAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRRVDR 138

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         +   + G + +    R   + G+   L   E  +L  L       + + Q
Sbjct: 139 AKVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQ 198

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D A     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 199 LLEEVWDWVD-ASSTRTVDSHVKALRHKL----GASTIRTVHGVGYAFE 242


>gi|225575707|ref|ZP_03784317.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037087|gb|EEG47333.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E  +  +    L+ +  ED   I   L+       
Sbjct: 4   ILIVEDEEAIADLERDYLEISGFEVEIAHRGDI--GLKRAMEEDFDLIILDLMLPEVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +R     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  DICRQVREIKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLDRYER 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   I++    R   V GE      +E  +L +L  N  +   K ++F
Sbjct: 122 LVGSGMPKNDVVEIRGIKIDKTARRVWVNGEETTFTTKEFDLLTFLAENPNRVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 REIWDM-ESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|224368969|ref|YP_002603133.1| two component transcriptional regulator (Winged helix family
           protein) [Desulfobacterium autotrophicum HRM2]
 gi|223691686|gb|ACN14969.1| two component transcriptional regulator (Winged helix family
           protein) [Desulfobacterium autotrophicum HRM2]
          Length = 228

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  I      G +++   + +    +      D+  ++  L       +
Sbjct: 3   LLLVEDDVKIADFVIKGLSAAGFAVDHAVNGQDGLHMACFEENDLIVVDVMLP--CLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA     P+I +S    +   +   ++G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  SLIKTLRARGFNTPVIVLSARDRVDDRVRGLEAGADDYLTKPFAFSELLARIQALIRRAG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V       G + +    R+    G V  L   E  +LEYLM N+ + V+KT I   ++
Sbjct: 121 GVVDPTTLSYGELVMDLMKREVRRDGRVVELQPLEFSLLEYLMRNQERVVSKTMIMEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++     NVVE+ + +LR K+        + + R  GY +
Sbjct: 181 N-YNFDPMTNVVEARVCRLRDKIDKGFHPKLIHTVRGAGYVL 221


>gi|307153326|ref|YP_003888710.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
 gi|306983554|gb|ADN15435.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 804

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++     +           D+  ++  L       +
Sbjct: 3   LLLVEDDQNLAEVIKGALKSQHYLVDLATDGQTGLEFAEMFEYDLIMLDLMLP--KLDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  +  R      P++ ++        +   D+G DD + KP + +E+LARV A+ RR  
Sbjct: 61  QFCQQRRKQGDLTPILLVTAQDDATYKVRALDAGADDYLVKPFNIQELLARVRALLRRGG 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S+    + GP+ +         QG++  L  +E  ILE  + NR +  +++ +   ++ 
Sbjct: 121 LSSTPLLQWGPLDLNPSSCQVSYQGQLLHLTAKEYGILELFLRNRNRIFSQSALIEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            FDE+  EN V + I  LR+KLR      + +++   LGY ++
Sbjct: 180 SFDESPTENAVRTQIKSLRQKLRGAGASPNLIETVYGLGYRLN 222



 Score = 75.3 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 49/114 (42%), Gaps = 5/114 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G +L      +           D+  ++  +       +
Sbjct: 510 LMIVDDDPNLLEITRTYLEPWGFTLTLLQDPKQFWETLEQTNPDLLILDVEMPE--ISGI 567

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +L +++R      ++P++ +S + S +   + F +G DD + KPI   ++++R+
Sbjct: 568 DLCQVVRNDPHWHELPVLFLSAHTSAKVVREGFQAGADDYIYKPIVDSDLVSRI 621



 Score = 45.3 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 1/106 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D+   +           G+  E   +L   +   +S + DV  ++ F    GE  L
Sbjct: 385 LLIVDNDFALAQAIATQAKIWGLKSEIACNLSQAKRAIASFQPDVILLDLFFPDTGENGL 444

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106
           EL + +      +P I ++        +     G    + KP+   
Sbjct: 445 ELLQELSQLIPSIPTIVLTAQNDFSFRVKVARLGGVGFLQKPLAPE 490


>gi|163759095|ref|ZP_02166181.1| putative two-component response regulator transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
 gi|162283499|gb|EDQ33784.1| putative two-component response regulator transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
          Length = 241

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G++++  +  +   +L S    D   ++  L  +    L
Sbjct: 19  ILIIEDDLETAAYLSRAFREAGITVDHASDGDSGFFLASENTYDALVVDRMLPKR--DGL 76

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R +    P + +S    +   +    +G DD + KP    E+LAR+  + RR  
Sbjct: 77  SIISELRRNGDDTPALILSALGQVDDRVTGLRAGGDDYLTKPYAFSELLARIEILGRRKG 136

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 137 ARDQETTYRVGDLELDRLSHEVRRAGQPIPLQPREYRLLEYLMKNAGQVVTRTMLLEHVW 196

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+    G   + + R  GY +
Sbjct: 197 D-YHFDPQTNVIDVHISRLRSKIEKDFGEPLLKTVRGAGYMM 237


>gi|261867820|ref|YP_003255742.1| transcriptional regulatory protein QseB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413152|gb|ACX82523.1| transcriptional regulatory protein QseB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 223

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +       SA  D   ++  L       L
Sbjct: 3   ILLIEDDPLIGNGIQIGLTKSGFAVDWFTDGKTGLEAAQSAPYDAVVLDLTLP--KMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           ++ +  R +   VP++ ++   +L   +     G DD + KP    E++AR+ A+  RR 
Sbjct: 61  DVLQAWRKNGQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   +   ++   + R   +  +   L  RE ++LE  M N+ + + +  I   +Y 
Sbjct: 121 GHANPIIQHSRVKFDPNQRKVFLCDQEIALTTREYKLLELFMLNKERVLTRDFIEDKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D  V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 181 -WDNEVSSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219


>gi|228934470|ref|ZP_04097305.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825107|gb|EEM70904.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 226

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GINGLQ 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P + ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQKLRADNHTTPALLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGNQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|148241349|ref|YP_001226506.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849659|emb|CAK27153.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 252

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 103/227 (45%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++    + + EE L++  RE    +   ++       
Sbjct: 14  ILVVDDEASIRRILETRLSMIGYNV--VTAADGEEALEAFHREPTDLVVLDVMMPKLDGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 72  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 131

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++   +   +++ ++ R     GE   L   E  +LE L++  G+  ++ +I
Sbjct: 132 EHGGGSIPNSGVIQVSDLKIDTNKRQVYRAGERIRLTGMEFSLLELLVSRSGEPFSRGEI 191

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
              ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 192 LKDVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 238


>gi|332530601|ref|ZP_08406535.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis
           ATCC 19624]
 gi|332039938|gb|EGI76330.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis
           ATCC 19624]
          Length = 235

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +     +G +    ++    E    +   DV  ++  L   G   +
Sbjct: 7   ILIVEDEPKLAQVLMVYLRAEGFATTHVDNGLAVEAAVRAHAPDVILLDLMLP--GLDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R +RA    PLI ++        L   + G DD + KP + RE++ARV A  RR   
Sbjct: 65  SVCRQLRAFCHAPLIMLTARVDELDRLLGLEVGADDYLCKPYNPREVVARVKAQLRRAAW 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                A+ G +++          G+   L   E R+L  L A  G+ +++ Q+   ++  
Sbjct: 125 GPPASAQPGTLQLDDATLRASYAGQALDLTPAEFRLLSSLAAQAGRILSRAQLLDHLHD- 183

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              A+ +  ++SH+  LR+KL     G DP+ S   +GY+ +
Sbjct: 184 DGRAITDRAIDSHVRNLRRKLDAAAPGRDPIRSVYGVGYAWE 225


>gi|258425096|ref|ZP_05687967.1| two component response regulator [Staphylococcus aureus A9635]
 gi|257844930|gb|EEV68973.1| two component response regulator [Staphylococcus aureus A9635]
          Length = 224

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 102/220 (46%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +  + +     E  L+   ++ V  +   ++  G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHI--DAYTQPSGEAALKLLEKQRVDIVVVDIMMDGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN+    G + +     + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+  +          L      D+  ++  +       +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEGLKTQKVEDAMEALQLLEEKEFDLIILDIMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+         E G + V +D R   ++G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNSSIEHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            A++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 EAVWEEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|291547625|emb|CBL20733.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 229

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G  +E  N  +           D+  ++  L        
Sbjct: 4   ILIIEDEEAIADLEKDYLELSGFEVEIENRGDTGLVRAMKEEFDLIILDLMLPEV--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  DICRQVREEKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   I++    R   V GE      +E  +L +L  N  +   K ++F
Sbjct: 122 LVGSNVHKNDVIEIRGIKIDKTARRVWVNGEETTFTTKEFDLLTFLAENPNRVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 REIWDM-ESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|229083561|ref|ZP_04215892.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
 gi|228699758|gb|EEL52412.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
          Length = 238

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++D        +   ++     E    L    + ++  ++  +       +E
Sbjct: 7   LIADDEKEIRDLLKKYLERELYIVDIAVDGEEALHLFEQNKYNLIILDLMMPKV--DGIE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R  + +P++ ++        +     G DD + KP    E++AR+ A+ RR    
Sbjct: 65  VCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSVNEVIARIKALMRRFLVL 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  +     V      L  +E  +L++  +N  +   KTQ+F
Sbjct: 125 GSNAGTQEKTLLTFKGLTIDVNKYTVNVNDAEISLTGKELELLKFFASNPEQVFTKTQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGYKF 230


>gi|298491500|ref|YP_003721677.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233418|gb|ADI64554.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 240

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 93/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    L      D+  ++  L        
Sbjct: 8   ILVVDDDPAVRNLIQRFLIRQNYQVEAAEDGKAALALFEQFNPDLVILDVNLPDAI--GF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +++ + V ++ ++        +  F  G DD + KP    E+  RVAAI RR +V
Sbjct: 66  NLCQDMQSRNGVFVLMLTSRTDESDKIRGFSKGADDYLTKPFGLGELEVRVAAILRRQRV 125

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R+     +  PL   E  +L +L ++ G+   ++++   +
Sbjct: 126 VTTAEQKRLIFEKLMIDPVRREVSFNNQPVPLTALEFDLLHFLASHPGRVWRRSELIQEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++   ++ VV+ HI ++RKK+  +      + + R +GY  + 
Sbjct: 186 WD-YEYVGDQRVVDVHIGQIRKKIEIDAGQPALIQTVRGVGYKFEC 230


>gi|262374891|ref|ZP_06068125.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262309904|gb|EEY91033.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 228

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   +           G  +  F+  +      +  +  +  ++  +       L +
Sbjct: 6   LVEDEIELAQLVRDYLEAAGFEVSMFHDGQEAYNSFTQRKPSLMILDLMVPR--MDGLTI 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R  S +P+I ++        +   + G DD + KP   +E++ARV A+ RRL   +
Sbjct: 64  CRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYLCKPFSPKELVARVQAVLRRLDRKS 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                   R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I      
Sbjct: 124 EPESNDLFRMDKSQQRIWYQQKALNLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDSF 182

Query: 184 AVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
            V + V++SHI  LR+K+ +        + + +   +GY  ++
Sbjct: 183 DVADRVIDSHIKNLRRKISDAAETGNRHEWIQAVYGVGYRFEY 225


>gi|154509502|ref|ZP_02045144.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799136|gb|EDN81556.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
           17982]
          Length = 227

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  ++G  +                  D+  ++  L   G    
Sbjct: 5   ILVVDDDVALAEMIGIVLQNEGYEVVFCADGSAALTQFQEHNPDLVLLDVMLP--GMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R IR  S  P++ ++        +   ++G DD V KP   +E++ARV A  R  + 
Sbjct: 63  DVCRAIRRVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRED 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++       + +   G   + +G V  L   E  +L  L  +  K  ++ ++   ++G
Sbjct: 123 SQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            +  A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 -YRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGYR 222


>gi|33861262|ref|NP_892823.1| two-component response regulator, phosphate [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33639994|emb|CAE19164.1| two-component response regulator, phosphate [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 242

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LI+D   ++         +G  +  F +     +++     +D   I   L+  G   
Sbjct: 14  ILLIEDDKSIRLTVTESLISEGFEVSNFKDGSSALDFILGEGIKDFDLILLDLMLPGLNG 73

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL R IR      P++ +S   +    +   + G DD + KP    E++AR  A+ RR 
Sbjct: 74  LELCRKIRNEELYTPILILSAKGNESDRVLGLEVGADDYLTKPFGISELIARCRALLRRS 133

Query: 120 KVSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           K    +        E   I++F++        +   L  +E ++LE  + N  +  ++  
Sbjct: 134 KRGKEKKQKIETIIEYKNIKMFTEECRVTNFNQEIILSPKEFKLLELFIKNPKRVWSRDL 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           I   I+ + D   +   V+ H+  LR+KL  N      + + R  GY  
Sbjct: 194 ILEKIWAI-DFIGDTKTVDVHVRWLREKLEENPSAPKIIKTVRGFGYRF 241


>gi|47564364|ref|ZP_00235409.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558516|gb|EAL16839.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 224

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 100/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLH 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V           +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCKMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 220


>gi|291542818|emb|CBL15928.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 235

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 99/234 (42%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D       +DG ++  F N L+  E +++  + D++ ++  L       
Sbjct: 5   ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGLDALECIETQ-KMDLAILDVMLPD--IDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + IR     P+I ++        +     G DD + KP +  E++ARV    RR  
Sbjct: 62  FRICQKIREQYFYPIIILTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYV 121

Query: 121 VSNNRA------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             NN A            +   + +  +     + G+   L   E  IL YL  NRGK +
Sbjct: 122 RYNNAANTEEKDTPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVI 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +  ++F  I+G        N V +HI +LR+KL         + +   +GY+I+
Sbjct: 182 SSEELFENIWGEK-FLDNNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIE 234


>gi|228928262|ref|ZP_04091303.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229185421|ref|ZP_04312603.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228598009|gb|EEK55647.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228831309|gb|EEM76905.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 226

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GINGLQ 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 222


>gi|158338636|ref|YP_001519813.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308877|gb|ABW30494.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 225

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       D   +++  +  E    L  +   D+  ++  L       L
Sbjct: 3   LLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVMLP--KMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
              R +RA    +P++ ++   +    +D  D+G DD V KP    EI AR+ A+ RR  
Sbjct: 61  AFCRQMRAQGLDIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRGP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E   +++  +  +   Q E+  L  +E  +LE  + N+ +  ++ QI   ++ 
Sbjct: 121 MTSPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLELFLRNKRRVFSRAQILEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            ++   EE+ V++HI  LR KL+      D + +    GY +
Sbjct: 180 AYEVLPEEDTVKAHIKGLRHKLKGAGAPNDLIQTVYGFGYRL 221


>gi|328948860|ref|YP_004366197.1| transcriptional regulator [Treponema succinifaciens DSM 2489]
 gi|328449184|gb|AEB14900.1| two component transcriptional regulator, winged helix family
           [Treponema succinifaciens DSM 2489]
          Length = 231

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++                 + +    L  +   D+  ++  L       L
Sbjct: 3   ILIVDDEEPIRELIKYNVEKQKYETFTAENGQQALELCRNKNPDLVILDLMLPD--MSGL 60

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ RIIR  S    +P+I ++        +   + G DD V KP   + +LAR+ ++ RR
Sbjct: 61  DICRIIRNDSSIKNIPIIMVTAKTEDSDIVTGLELGADDYVTKPFSPKVLLARIQSVLRR 120

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S+   +   + +          G+   L   E  ILE+L  ++G+  ++ QI
Sbjct: 121 KGEAFRSNSDEDIKIRSLVISPLKHKVTQNGKEVELSATEFSILEFLARHKGQVFSRQQI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
            +A+ G     V +  ++  I  +RKK+ +        +++ R +GY I
Sbjct: 181 INAVKGSS-YPVTDRSIDVQILGIRKKIGDSPESSNPFIETLRGVGYRI 228


>gi|323184776|gb|EFZ70147.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1357]
          Length = 209

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 89/207 (42%), Gaps = 13/207 (6%)

Query: 24  VSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPL 75
           +   GF  +E E++  +  +      D+  ++  L   G   ++  + ++  S    +P+
Sbjct: 2   LEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLP--GGSGIQFIKHLKRESMTRDIPV 59

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRV 133
           + ++     +  +   ++G DD + KP   +E++AR+ A+ RR+         E   + +
Sbjct: 60  VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSL 119

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
                      E   +   E ++L + M +  +  ++ Q+ + ++G  +  VE+  V+ H
Sbjct: 120 DPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGT-NVYVEDRTVDVH 178

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I +LRK L        V + R  GY  
Sbjct: 179 IRRLRKALEPGGHDRMVQTVRGTGYRF 205


>gi|229592122|ref|YP_002874241.1| two-component system transcriptional regulatory protein PhoP
           [Pseudomonas fluorescens SBW25]
 gi|229363988|emb|CAY51531.1| two-component system, transcriptional regulatory protein PhoP,
           regulator of virulence determinants [Pseudomonas
           fluorescens SBW25]
          Length = 225

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++   +    D G  +E   + E   +       D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLLTRLTDSGHVVEAVANAEEALYQTGQFNHDLAIIDLGLPGMG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R  ++  P++ ++   + Q  ++   +G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  DLIRQLRTQAKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARMNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ +  + +   +  +   L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLDEQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL    GF P+D+ R LGY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEGPGGFKPIDTVRGLGYLFN 221


>gi|78779101|ref|YP_397213.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712600|gb|ABB49777.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 242

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   ++         +G  +  F + L   +++ +  ++DV  I   L+  G   
Sbjct: 14  ILLVEDDKSIRLTVSETLISEGFKVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLNG 73

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL R IR      P++ +S   +    +   + G DD + KP    E++AR  A+ RR 
Sbjct: 74  LELCRKIRNDEDYTPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALIRRS 133

Query: 120 KV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           K        S    E   I++F +            L  +E ++LE  M N  +  ++  
Sbjct: 134 KRNKKYIENSKTVLEFNHIKMFLEECRVTSFDREITLSPKEFKLLELFMKNPKRVWSRDL 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           I   I+ + D   +   V+ H+  LR+KL  +      + + R  GY  
Sbjct: 194 ILEKIWEI-DFIGDTKTVDVHVRWLREKLEEDPSAPKFLKTVRGFGYKF 241


>gi|187778177|ref|ZP_02994650.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
           15579]
 gi|187775105|gb|EDU38907.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
           15579]
          Length = 239

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +G  +      E    L       +  ++  L        
Sbjct: 13  ILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLP--KLSGE 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   IR  S VP+I ++     +  L+    G DD + KP   RE++ARV A+ RR   
Sbjct: 71  EVCSKIRESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 130

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G + V         +G V  L   E ++L  L+ N G+   + Q+  
Sbjct: 131 GKYPLAEHLILNDGDLEVDIRKMKVLKKGNVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +G +D    +  V+++I  +R+K+ +     + + +   +GY  
Sbjct: 191 QAFG-YDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 235


>gi|157165503|ref|YP_001467191.1| response regulator receiver domain-containing protein
           [Campylobacter concisus 13826]
 gi|112801411|gb|EAT98755.1| transcriptional activator protein CopR [Campylobacter concisus
           13826]
          Length = 219

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S++   + E      + A  D+  ++  +       L
Sbjct: 3   ILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPV--MDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              +  RA   V P++ ++    +   +   D+G DD + KP   +E+LARV  + RR  
Sbjct: 61  TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  +    G +++    +  E  GE   L  +E  ILE+LM N+G+ + + QI   ++ 
Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD     NV++  I  +RKKL      + + +KR LGY +
Sbjct: 181 -FDYTGGSNVIDVLIKNIRKKL---GECEAIQTKRGLGYVV 217


>gi|325529261|gb|EGD06214.1| DNA-binding response regulator CreB [Burkholderia sp. TJI49]
          Length = 235

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +   G DG+        +         R D+  ++  L        
Sbjct: 6   ILVVEDEMAIADTIVYALGTDGMQTVHCTLGQAALDRLRDTRVDLVVLDVGLPD--LSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +   + G DD V KP   RE+ ARV  I RRL  
Sbjct: 64  EVCRRLRTFSDVPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRLNR 123

Query: 122 SNN-----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           S N            A      + ++G      G    L R E  +L  L+ + G+  ++
Sbjct: 124 SPNAGQAGAPAAAAAAVAPGFELDAEGARLSWLGHALDLTRYEFGLLALLVRHPGRIYSR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            Q+   ++    E+ +   V++H+  LR KLR    G DP+ + R +GYS+
Sbjct: 184 EQLMDLVWHEALESAD-RTVDTHVKTLRAKLRAIDPGRDPIRTHRGMGYSL 233


>gi|258593609|emb|CBE69950.1| putative Two-component transcriptional regulator; putative
           transcriptional regulator involved in heavy-metal
           (Cu/Zn) homeostasis [NC10 bacterium 'Dutch sediment']
          Length = 225

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             ++GV ++  NS +  E+L S    DV  ++  L   G+  +
Sbjct: 3   LLLVEDDQKAARVLKKGLAEEGVVVDIANSGDEGEYLASVNDYDVIVLDWLLP--GKDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +RA     P++ ++   +L+  +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  QLCRELRARGLSTPILMVTAKDALRDRIKGLDTGADDYMVKPFAFAELLARIRALMRRGT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +          G    L  +E  I+E+L    G+ V +T +   I+ 
Sbjct: 121 GPRPTMLRVADLVIDPASHRVTRGGASIKLTTKEYAIIEFLARRVGEVVTRTTLGEHIW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     N+V+ HIS LRKK+        + + R  GY +
Sbjct: 180 EDEFDNLTNLVDVHISNLRKKIDAGSTVSLIHTVRGRGYRL 220


>gi|255280222|ref|ZP_05344777.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255269313|gb|EET62518.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 225

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 107/226 (47%), Gaps = 14/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKGE 58
           +++DD + ++         D +  + F  LE E+  Q+     + +D++ +   ++    
Sbjct: 7   LVVDDESRMRK-----LVKDFLVKKDFTVLEAEDGAQAVDVFFSTKDIALVILDVMMPKM 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              ++ R IR  S VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR
Sbjct: 62  DGWQVCREIRGVSNVPIIMLTARADERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +     G I +       +  G+   L  +E  +L Y M N+G  +++ +I ++
Sbjct: 122 SNALAPDKIMTAGKISLDKAAHVVKADGQSVDLSYKEFELLSYFMENQGIALSREKILNS 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++  +D   +   +++H+ KLR KL  +   D + +   +GY  + 
Sbjct: 182 VWN-YDYFGDARTIDTHVKKLRSKLGKQG--DYIKTIWGMGYKFEV 224


>gi|168178458|ref|ZP_02613122.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670774|gb|EDT82748.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 233

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +   +      E    L       +  ++  L        
Sbjct: 7   ILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLP--KLSGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   IR  S VP+I ++     +  L+    G DD + KP   RE++ARV A+ RR   
Sbjct: 65  EVCSKIRESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G + V         +G+V  L   E ++L  L+ N G+   + Q+  
Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKKGKVVTLTPYEFKVLVSLLNNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +G +D    +  V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|56552060|ref|YP_162899.1| two component transcriptional regulator PhoB [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|4768853|gb|AAD29647.1|AF124757_7 phosphate regulatory protein PhoB [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543634|gb|AAV89788.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 231

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +     F      +      +    L      D+  ++  +  +G   +
Sbjct: 6   LLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMV--EGTSGI 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R     + +P+I ++        +   ++G DD V KP   RE++ARV A+ RR
Sbjct: 64  EVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++   S  +     I +       +  G    +   E R+L +LM    +  ++ ++   
Sbjct: 124 IRPALSKEQLNYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDY 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+G  D  +E   V+ HI +LRK L      D + + R  GY++D
Sbjct: 184 IWGQ-DSDIELRTVDVHIRRLRKALNRDGLPDLIRTVRSAGYALD 227


>gi|264678608|ref|YP_003278515.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|299529834|ref|ZP_07043266.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
 gi|262209121|gb|ACY33219.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|298722137|gb|EFI63062.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
          Length = 230

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 96/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       ++G +++  ++      L S    D+  ++  L   G   L
Sbjct: 3   ILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLP--GIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   Q P++ ++    ++  +     G DD + KP    E++AR+  + RR   
Sbjct: 61  AVLAALRQTKQTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSGP 120

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S               + +    R     G+   L  +E  +L  L+  +G+ + +T++ 
Sbjct: 121 SVAQAAPEATTLRLADLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLTRTELA 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++ + +   E NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 SQVWDM-NFDSETNVVEVAIRRLRLKLDQPFEQHLLHTVRGMGYVLE 226


>gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 248

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +                  D+  ++  L        
Sbjct: 16  LLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEEPDLVVLDVMLPD--MDGF 73

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ ++    +   +     G DD V KP    E++AR+ AI RR  
Sbjct: 74  TVARRLRERDVTTPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRRTH 133

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +  D  +    G    L   E ++L YLM N G+ V+K QI   
Sbjct: 134 ATQDENDGIVRVADLVLDEDAHEVHRAGVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           ++  +D   +  +VES+IS LR+K+      D       + ++R +GY +
Sbjct: 194 VW-EYDWNGDAAIVESYISYLRRKIDQIETADGQPVAPLIQTRRGVGYML 242


>gi|78188418|ref|YP_378756.1| two component transcriptional regulator [Chlorobium chlorochromatii
           CaD3]
 gi|78170617|gb|ABB27713.1| two component transcriptional regulator, winged helix family
           [Chlorobium chlorochromatii CaD3]
          Length = 225

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++     +    +  S   DV  ++  +       +
Sbjct: 3   LLIIEDEPGIAAFLKDGLEEEYFAVDLAFDGKSGLAMALSNDYDVLIVDWMIPA--LSGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A   VP+I ++   +L+  L   ++G +D + KP    E+LAR+    R   
Sbjct: 61  EVCRQVRKAGCLVPIIFLTARDTLEDVLFGLEAGANDYIKKPFAFEELLARIRVQLRSRT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +          G    L  +E  +LEYL+ N+ +   +++I   ++ +
Sbjct: 121 QGEESLSAGGVTLNPATHQVTYNGSELILTPKEFALLEYLLRNKDRVCTRSRIIEHVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + +V++ +I+ LR+KL      + + + R +GY I
Sbjct: 181 H-FDADTSVIDVYITFLRRKLEAVGCNNFIQTIRGIGYII 219


>gi|323142343|ref|ZP_08077175.1| response regulator receiver domain protein [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413227|gb|EFY04114.1| response regulator receiver domain protein [Phascolarctobacterium
           sp. YIT 12067]
          Length = 228

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 14/229 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   + +  +      G+  +G +S      L      ++  ++  L    E  
Sbjct: 1   MIFCVEDEQNICELEVYTLQSVGMEAQGCSSGRELFALLEKQVPELIVLDIMLPD--EDG 58

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + + R +RA   +S +P+I  +   S    +   DSG DD + KP    E++AR+ A+ R
Sbjct: 59  VSILRRLRADKRYSNIPVIMATAKGSEFDKVKGLDSGADDYIAKPFGMLEMVARIKAVLR 118

Query: 118 RLKVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R                G + V        V G    L  +E  +L   + + G   ++ 
Sbjct: 119 RCAAPRRDEDDEETIRIGRLEVKQMEHKVSVGGSEVVLTLKEYELLRKFLQHPGIVFSRD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ + I+G ++ + E   V+ HI  LR+KL      + +++ R +GY +
Sbjct: 179 KLLNDIWG-YEFSGETRTVDVHIRTLRQKLGEAG--ELIETIRGVGYRM 224


>gi|320008595|gb|ADW03445.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + D   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ +   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRADDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|307277355|ref|ZP_07558453.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
 gi|306505989|gb|EFM75161.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
          Length = 229

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++G  + + ++  E    L ++   D+  ++  +       
Sbjct: 3   ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPI--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV +I RR +
Sbjct: 61  MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       +  E GP+ +  D  +   ++ +   L   E  IL  L ++  +  +  +IF
Sbjct: 121 MQLTKEEPDELEVGPLMINKDSHEVKTIERKEIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074]
 gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 246

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 101/233 (43%), Gaps = 21/233 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   V+D        +G     +++G ++LE      +S R D+  ++  +    
Sbjct: 15  ILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEKA----ASYRPDLIVLDIQMPR-- 68

Query: 58  EKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L   R +RA    VP++ ++   ++   +   D+G DD + KP    E+ ARV A+ 
Sbjct: 69  MDGLTAARRVRAAQDTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALL 128

Query: 117 RRLKVS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR   +          +      +R+    R+         L R E  +LE L+A+  + 
Sbjct: 129 RRSSYAVEQAAPDDDGDVLAFADLRMDLSTREVLRGNRPVELTRTEFTLLEMLLAHPRQV 188

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 189 LTREQILKAVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 240


>gi|228946826|ref|ZP_04109128.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812813|gb|EEM59132.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 226

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIP--GINGLQ 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 222


>gi|223984150|ref|ZP_03634301.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
           12042]
 gi|223963882|gb|EEF68243.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
           12042]
          Length = 231

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +  F +    E L+   ++ +  I   ++      +
Sbjct: 6   ILVVDDDHEIADAIEIYLKSEGYEI--FKAYNGLEALEILNQQKIHCILMDVMMPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 64  QAIMHIRETSNIPIIILSAKSEDMDKVLGLNIGADDYITKPFNPLEMIARVKSQLRRYMQ 123

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +    E G + +  + +   ++GE   +   E RILE  + N  +  +  +I+ 
Sbjct: 124 LGATAETGTVIEVGGLSIDLEAKTVTLEGEPVKVTPIEYRILELFLTNLNRVFSIDEIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            ++        EN V  HI ++R+K+  +      +     +GY I+ N
Sbjct: 184 RVWNET-SFQSENTVAVHIRRIREKIEIDPKNPRYIKVVWGIGYKIEKN 231


>gi|322805157|emb|CBZ02721.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Clostridium botulinum H04402 065]
          Length = 229

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   ++D       + G+++  + +    E L       V  I   ++      
Sbjct: 5   IILVVDDDKDIRDMINIYLVNQGMNV--YTAANGIEALDILKNIKVDLIILDIMMPKMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++    IR    VP+I +S        +     G DD V KP    E+LAR+ +  RR K
Sbjct: 63  IKACMKIREMLNVPIIILSAKIDEADKILGLTIGADDYVGKPFSPLELLARIKSQLRRYK 122

Query: 121 VSNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             NN          +   + +     +  ++ +   L   E +IL  L  NRG+  +   
Sbjct: 123 QLNNNFKNTTKEVIQIDELSINISNHEVFLRDKQIKLTPYEFKILVLLAQNRGRVFSIAS 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+ +++   D    +  V  HI ++RKK+     ++ + +   +GY I+
Sbjct: 183 IYESVW-EEDYVASDRTVTVHIRRIRKKIGK--EYNYIKTVWGVGYKIE 228


>gi|302338212|ref|YP_003803418.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635397|gb|ADK80824.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 232

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G S+    + E      ++ + D+  ++  L   G   +
Sbjct: 6   ILVVDDEHDILELLKYNLEREGYSVITVETGEAAAATAAAKQPDLIILDLMLP--GIDGV 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR+      +P+I ++        +   + G DD + KP   + ++AR+ A+ RR
Sbjct: 64  EVCKRIRSREEVKDIPIIMLTAKSEDSDVISGLEVGADDYMTKPFSPKVLVARIRALLRR 123

Query: 119 LK------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +                I + +   + +       L   E  ILE+L  N G   +++Q
Sbjct: 124 KQLKEFPPREEPVITIHDIVIDTIRHEVKCSDVSLDLSVTEFSILEFLARNPGWVFSRSQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  A+ G  D  V E  V+  I  LRKKL++K   D +++ R +GY +
Sbjct: 184 IIGAVKGE-DYPVTERSVDVQILGLRKKLKDKG--DYIETVRGVGYRM 228


>gi|229590582|ref|YP_002872701.1| response regulator protein [Pseudomonas fluorescens SBW25]
 gi|229362448|emb|CAY49354.1| response regulator protein [Pseudomonas fluorescens SBW25]
          Length = 220

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +  G       +G +++             S   D   ++  L       L
Sbjct: 3   LLLIEDDDALGGGIHQALAREGYTVDWLQDGNSALHALLSETFDAVVLDLGLPR--MDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +R + + VP++ ++   + +  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLRRLRDSGATVPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +     G    L  +E ++L  L++  G+ + + Q+   +YG
Sbjct: 121 GRARVVIEHAGICLDPSTQQVSYHGVPVLLTPKEYQLLHELLSPPGRVMTRDQLMQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++E  E N +E HI  LRKK       + + + R +GY ++
Sbjct: 181 -WNEEAESNTLEVHIHHLRKK----FSSELIRTVRGVGYLVE 217


>gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 237

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 103/232 (44%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD A ++          G  +  + + +  E L      R D+  ++  +      
Sbjct: 8   ILVVDDEASIRRVLSTRLSKIGYQV--YTAADGVEALDVFYDQRPDLIILDVMMP--KLD 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + +R  S+VP+I ++    +   +   + G DD V KP   +E+ +RV +I RR+
Sbjct: 64  GYGVCQAVRKASRVPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSILRRM 123

Query: 120 K---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +          SN     G I V ++ R          L   E  +LE L  + G+ +++
Sbjct: 124 ETTKPLPFHHQSNGVIRFGSITVDTNKRQVFKGRSRISLTHMEFSVLELLATHPGEPISR 183

Query: 171 TQIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++    ++G   EA V+  VV+ HIS LR+KL +  G    + +   +GY++
Sbjct: 184 SEFLHKVWGYSHEANVDTQVVDIHISHLRRKLGDSSGNPKLIHTVHGVGYTL 235


>gi|291568591|dbj|BAI90863.1| two-component system response regulator (OmpR subfamily)
           [Arthrospira platensis NIES-39]
          Length = 227

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +G +++          L  +   D+  ++  L  +    L
Sbjct: 3   ILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQ--SGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+   +R   ++ P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  EICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V++NR + G ++   + +      +   L  +E ++L+YLM + G+ +  T+I  
Sbjct: 121 ILDSTVTSNRLQFGDLQFDCETQLAYRGQKAIELSEKESQLLQYLMRHPGQLLTHTEIHQ 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D+    NV+ + I  LR+K+        V +    GY  
Sbjct: 181 HLWGETDKKPSSNVLAAQIRLLRRKIELPGAVPLVHTVYGKGYRF 225


>gi|291086571|ref|ZP_06356184.2| QseB [Citrobacter youngae ATCC 29220]
 gi|291067819|gb|EFE05928.1| QseB [Citrobacter youngae ATCC 29220]
          Length = 268

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 52  ILLVEDDTLIGDGLKTGLSKMGFSIDWFTEGRQGKEALYSAPYDAVILDLTLP--GIDGR 109

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R  RA+  Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 110 DILREWRANGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 169

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +          GE   L  +E  +LE LM N+G+ + +  I   +Y 
Sbjct: 170 GQASNTLRHGEVTLDPGALVATAAGEPLSLKPKEFALLELLMRNKGRVLPRKLIEEKLY- 228

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 229 TWDENVSSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 265


>gi|227551872|ref|ZP_03981921.1| response regulator [Enterococcus faecium TX1330]
 gi|257895536|ref|ZP_05675189.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|227179044|gb|EEI60016.1| response regulator [Enterococcus faecium TX1330]
 gi|257832101|gb|EEV58522.1| transcriptional regulator [Enterococcus faecium Com12]
          Length = 238

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 103/237 (43%), Gaps = 23/237 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   V +     F ++G       +G   L+   +L++    D+  ++  L    
Sbjct: 3   ILMIEDNQSVSEMMQMFFLNEGWEATFKYDGKEGLDA--FLENPQHWDMITLDLNLPT-- 58

Query: 58  EKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              + + R IR   S VP+I ++   S    +   + G DD V KP     ++AR+ A++
Sbjct: 59  MDGMLVGREIRKVSSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALH 118

Query: 117 RRLKVSNNR-----------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANR 164
           RR +++  R            ET   ++ +  R+  +       L  +E  +L  L    
Sbjct: 119 RRSELAEAREEAAASDDHFDIETSHFKMNTKTREAYLDNRPIEGLTPKEFDLLFTLAKKP 178

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 179 RQVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 233


>gi|319794725|ref|YP_004156365.1| two component heavy metal response transcriptional regulator winged
           helix family [Variovorax paradoxus EPS]
 gi|315597188|gb|ADU38254.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus EPS]
          Length = 225

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       ++G  ++         +L +     +  ++  L   G    
Sbjct: 3   ILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGEYALVLLDVMLP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR    VP++ ++    ++  +     G DD + KP    E+LARV A+ RR K 
Sbjct: 61  TVLQAIRRTKNVPVLVLTARDKVEDRVQGLQQGADDYLVKPFSFSELLARVQALLRRGKA 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++       + +    R          L  +E  +L  L+  RG+ +++T +   ++ +
Sbjct: 121 QDSTVLRLADLELDMASRKVFRNRVRLDLTAKEFTLLVVLLRRRGQILSRTTLAEQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRSKIDDPFEVKLLHTVRGMGYVLE 220


>gi|229816849|ref|ZP_04447131.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
 gi|229785865|gb|EEP21979.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
          Length = 262

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A        +    S      +    + D+  ++  L        
Sbjct: 28  IVVVDDEPSIRELLVASLHFANFEVSTAASGSEAIEVIEKVQPDLIVLDVMLPD--IDGF 85

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 86  TVTRRIRQEGINAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 145

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 146 EQTEEDPIIRVGDLEINEDSHDVTRSGQTIDLSPTEYKLLRYLMDNAGRVLSKAQILDHV 205

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+      D           +++KR +GY I
Sbjct: 206 W-QYDWGGDAAIVESYISYLRKKVDGIEVTDENGDKHKVTPLIETKRGIGYMI 257


>gi|167745958|ref|ZP_02418085.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
 gi|317473358|ref|ZP_07932653.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167654473|gb|EDR98602.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
 gi|316899194|gb|EFV21213.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 233

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       ++   +  + S           + D++ ++  L        E
Sbjct: 7   LVVDDEKEIADFIELYLKNENYEVFKYYSGAGALECVKQEQIDLAILDVMLPD--IDGFE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR     P+I ++   +    ++    G DD + KP    E++ARV A  RR    
Sbjct: 65  ILKEIRKDHNFPVIMLTAKTASMDKINGLTLGADDYIEKPFEPLELMARVKAQLRRFIRY 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + S +  E   + +  +        E   L   E  IL  L  N+GK ++   +F
Sbjct: 125 NDGSGQSSEDTLEIAGLVLNRNTHQCLYGEEEVTLTPLEFSILWILTKNKGKVISSENLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             ++         N V  HI  LR+KL   +G  + + +   +GY ++
Sbjct: 185 EQVWKEKYFKNNNNTVMVHIRHLREKLGEVMGHKELIKTVWGVGYKVE 232


>gi|239981886|ref|ZP_04704410.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291453741|ref|ZP_06593131.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356690|gb|EFE83592.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDQMLP--GRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   +  G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 221


>gi|191173324|ref|ZP_03034854.1| heavy metal response regulator [Escherichia coli F11]
 gi|190906441|gb|EDV66050.1| heavy metal response regulator [Escherichia coli F11]
          Length = 239

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 19  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234


>gi|293394379|ref|ZP_06638679.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291423357|gb|EFE96586.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 237

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  +           +      D   ++  L   G   L
Sbjct: 7   ILIVEDDGNIAELLQLHLRDEGFDISHAGDGNLGMAMLEQGGWDALILDLMLP--GIDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  R  ++  P+I  S   S    +   + G DD + KP    E++ARV A++RR  
Sbjct: 65  EICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L++         + +    R+  +  +   L  RE  +L +   + GK  ++  +
Sbjct: 125 AMSRNLRLDAGILSIDGLDIDPISREVHLNQQPLDLTPREFDLLYFFARHPGKVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR KL RN    + + +   +GY  
Sbjct: 185 LNQVWG-YQHEGYEHTVNTHINRLRIKLERNPAEPERILTVWGMGYKF 231


>gi|237744968|ref|ZP_04575449.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|256028433|ref|ZP_05442267.1| two-component response regulator czcR [Fusobacterium sp. D11]
 gi|289766356|ref|ZP_06525734.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
 gi|229432197|gb|EEO42409.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|289717911|gb|EFD81923.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
          Length = 224

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 99/224 (44%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  S++     E           D+  ++  L        
Sbjct: 3   ILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLP--KMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +R +    P++ ++   +++  +   D G DD + KP    E+LAR+ AI RR  
Sbjct: 61  EVVKNLRTNKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  +   + V +  +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++ 
Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +    E N+++  I  +RKK+        + +KR LGY +  +
Sbjct: 181 -YAYEGESNIIDVLIKNIRKKIDLGNSKPLIHTKRGLGYVLKED 223


>gi|163744528|ref|ZP_02151888.1| putative two-component response regulator transcriptional
           regulatory protein [Oceanibulbus indolifex HEL-45]
 gi|161381346|gb|EDQ05755.1| putative two-component response regulator transcriptional
           regulatory protein [Oceanibulbus indolifex HEL-45]
          Length = 223

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     +         G   +  ++ + ++    +   D   I    +  G   L 
Sbjct: 4   LVVEDDGETAEYICTSLKALGHVTK--HASDGKQGFLDALDNDFDVIVVDRMLPGLDGLT 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           L + +R A+   P++ +S    L   ++  ++G DD + KP    E+ AR+ A+ RR  +
Sbjct: 62  LVKSVRGANVDTPILFLSALGGLNDRVNGLEAGADDYLVKPFAFSELSARLTALARRPPM 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    R +   + +          G+   +  RE R+L YLM N  + V +T +  A++ 
Sbjct: 122 QAEETRLQVADLEIDLIRHTVCRSGQEIAVQPREFRLLSYLMKNAERVVTRTMLLEAVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F      NVVE+HIS+LR K+        + + R  GYS+
Sbjct: 182 -FHFDPNTNVVETHISRLRNKIDKPFDQPLIHTVRGAGYSL 221


>gi|160900855|ref|YP_001566437.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366439|gb|ABX38052.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 239

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          DG+++     L        +   D   ++  L       L+
Sbjct: 13  LLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPD--GNGLD 70

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +R A + VPL+ +S        +   + G DD + KP   RE++AR  A+ RR++ 
Sbjct: 71  WCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRVQR 130

Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                            +   G+   +QG    L RRE ++L  L+   G+ +++  +  
Sbjct: 131 LQPAPTASAAPADALFSIDPQGQRVRMQGVPLELTRREYQLLRCLLERPGRILSREFLLD 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +I+G  D    +  V++H+  LR KLR      D + + R +GYS+
Sbjct: 191 SIWGQ-DSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 235


>gi|330718091|ref|ZP_08312691.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 229

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 99/230 (43%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   E   + + +E L       D S +   ++      
Sbjct: 3   ILVVDDDNEIAELLEIYLKNEGY--EPVMASDGKEALSKLNTNPDTSLMILDVMMPNMNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +R  S++P++ +S        +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  LDVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAE 120

Query: 121 -----VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 + +  + G + +  D  +   V G++  L   E  IL  L ++  +  +   IF
Sbjct: 121 NAVQDKAPDVLDIGSLIINKDSHEVKTVAGDLVNLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++   +  V    V  H+S LR K+     G   + +   +GY I+ N
Sbjct: 181 EKVWQQ-ESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGYKIEVN 229


>gi|309778806|ref|ZP_07673579.1| DNA-binding response regulator BaeS [Ralstonia sp. 5_7_47FAA]
 gi|308922514|gb|EFP68138.1| DNA-binding response regulator BaeS [Ralstonia sp. 5_7_47FAA]
          Length = 219

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++I+D   +               E                 ++  ++  L   G+  
Sbjct: 1   MILIIEDEPKLAALMTDYLHAAHYETEWLADGTHATQRVRETAPELVLLDLMLP--GKDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S+VP++ ++        L   + G DD V KP   RE++AR+  I RR++
Sbjct: 59  LEICREVRAFSEVPIVMVTARVEEIDRLLGLELGADDYVCKPFSPRELVARIKTILRRVQ 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E+  + + +      ++G+   L   E R+L  L    G+ ++++ +   IY  
Sbjct: 119 RGGGVPESA-LHIDAAAYAATLRGQRLDLTPVEFRLLAALAGAPGRILSRSNLLEQIYDD 177

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
               V +  V++HI  LR+K+     G + + S   +GY +D
Sbjct: 178 H-RIVTDRTVDTHIKNLRRKMEQVSPGTEMIHSVYGVGYRLD 218


>gi|332653533|ref|ZP_08419278.1| phosphate regulon response regulator PhoB [Ruminococcaceae
           bacterium D16]
 gi|332518679|gb|EGJ48282.1| phosphate regulon response regulator PhoB [Ruminococcaceae
           bacterium D16]
          Length = 224

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D A ++   +      G+  +GF+              ++  ++  L    E  
Sbjct: 1   MIYILEDDASIRKLVVYTLQSQGMEAQGFDRPSQFWEAMEKGSPELVLLDIMLPE--EDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L++ + +R   A   +P+I ++   +    +   D G DD V KP    E++ARV    R
Sbjct: 59  LQVLKRLRSMPATKTLPVIMLTAKSTEYDKVLGLDEGADDYVAKPFGMMELMARVRTALR 118

Query: 118 RLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +  + +T   G + V  +            L  +E ++L  L+   G    + Q+ 
Sbjct: 119 HAGQNQPKEKTYSLGSLFVDPERHIVRDGDREVTLTLKEFQVLCLLLERAGTVFTRDQLL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + I+G ++       V+ HI  LR+KL      D +++ R +GY I
Sbjct: 179 NTIWG-YEFDGASRTVDVHIRTLRQKLGKSG--DCIETVRGIGYKI 221


>gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 235

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    +           R D+  ++  L        
Sbjct: 9   LLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVMLPD--MDGF 66

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R   +  P++ ++   + +  +    +G DD V KP    E++AR+ A+ RR  
Sbjct: 67  DVVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRRTG 126

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +      R     I +  +  +   +G    L   E ++L Y MAN G+ ++K QI  
Sbjct: 127 AGDLPARPPRLTFADIELDEESHEVWRRGRAVALSPTEFKLLRYFMANAGRVLSKAQILD 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   +  +VES++S LR+K+ N      + + R +GY +
Sbjct: 187 HVWD-YDFRGDVGIVESYVSVLRRKIDNA-DPRLIHTLRGVGYVL 229


>gi|107099448|ref|ZP_01363366.1| hypothetical protein PaerPA_01000460 [Pseudomonas aeruginosa PACS2]
 gi|218889203|ref|YP_002438067.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa LESB58]
 gi|296386961|ref|ZP_06876460.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PAb1]
 gi|313111910|ref|ZP_07797700.1| two-component response regulator CreB [Pseudomonas aeruginosa
           39016]
 gi|218769426|emb|CAW25186.1| two-component response regulator CreB [Pseudomonas aeruginosa
           LESB58]
 gi|310884202|gb|EFQ42796.1| two-component response regulator CreB [Pseudomonas aeruginosa
           39016]
          Length = 229

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G +            LQ     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALQAEGFATTWVTLAGEALALQERQPADLLILDVGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                E    +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+
Sbjct: 122 RPAALEGAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            G+  EA  E  ++SHI  LR KLR      + + + R LGYS
Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNERGEAIQTHRGLGYS 223


>gi|219856745|ref|YP_002473867.1| hypothetical protein CKR_3402 [Clostridium kluyveri NBRC 12016]
 gi|219570469|dbj|BAH08453.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 233

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +  S++  +     + L    + D   I   ++  G    
Sbjct: 7   ILVIDDDKELCALIRQSVAVE--SIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP++ ++      + +    SG DD + KP    E++ARV ++ RR   
Sbjct: 65  QTMEKIRQTSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 124

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       + +  D R    Q   F LP +E  +L +   N+GK + K QI+ 
Sbjct: 125 FNTTGDHSQPLTYQGLTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            ++G      + N + + IS+LRKK+    G    + + + +GY  +
Sbjct: 185 EVWGEAYVYDDSN-IMAIISRLRKKIEPDSGAPYYIQTVKGIGYRFN 230


>gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 222

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +          +G   +  F+  +  E  Q+ A  D+  ++  L       
Sbjct: 4   ILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHA-WDLVLLDVMLPE--LSG 60

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R IR    V P+I ++   S+   +   D G +D + KP    E+LARV A  R +
Sbjct: 61  LEVLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLRTV 120

Query: 120 KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +      +T     + +    RD +   E   L  +E  +L + + N+G+ +++ QI + 
Sbjct: 121 QTRERVEDTLMFQELTINEKTRDVQRGNETIELTPKEFELLVFFIKNKGQVLSREQILTN 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NV++ ++  LRKKL      + + + R +GY +
Sbjct: 181 VWG-FDYYGDTNVIDVYVRYLRKKL---SLTEALQTVRGVGYRL 220


>gi|329894345|ref|ZP_08270215.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [gamma proteobacterium
           IMCC3088]
 gi|328923141|gb|EGG30464.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [gamma proteobacterium
           IMCC3088]
          Length = 230

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D + V D   +     G + E  ++        +SAR D   ++  L       L 
Sbjct: 8   LLIEDDSSVADFVASELALKGHNCECASTGTEGLLAANSARWDALIVDRMLP--KLDGLS 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ +S    +   +     G DD + KP    E++AR+ AI+RRL  
Sbjct: 66  VIKSLRDKGDLTPVLILSALGEVDDRVKGLQIGADDYLVKPFSSEELMARLEAIHRRLAP 125

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E   +R+    ++    G V  L  RE R+LEYLM N GK V ++ +   +
Sbjct: 126 LGADFRTTLEAEDLRLDLITQEVRRAGRVIALQPREYRLLEYLMRNAGKIVTRSMLLENV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +    + NV++ HIS+LR+K+     +  V + R  GY  
Sbjct: 186 WG-YHFDPQTNVIDVHISRLRQKIDRDFDYPLVHTVRGAGYRF 227


>gi|306834849|ref|ZP_07467910.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|304569273|gb|EFM44777.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 268

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPE--LDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++       +E +V+ HI  LR+KL  +  G   +D+ R +GY ++
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTQGRGFIDTVRGVGYRVE 266


>gi|325981774|ref|YP_004294176.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325531293|gb|ADZ26014.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 242

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +         + L ++   D+  ++  L       L
Sbjct: 5   ILIVEDELAIQELIALNLKKAGHMVLCAGDATHAKLLINNVLPDLVLLDWMLPD--ITGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R +R       +P+I ++        +   ++G DD + KP   RE+LAR+ A+ RR
Sbjct: 63  EFARSLRREERTKTIPIIMLTARIQENDKIAGLEAGADDYITKPFSPRELLARIKAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGE-------VFPLPRRERRILEYLMANRGKRVA 169
              ++S+   + G +++        V  E          L   E R+L +LMA + +   
Sbjct: 123 RLPEMSDEIIDIGGLKLDPTTHRVHVYSEYDSAKLSEIILGPTEFRLLHFLMAYKERVHT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+   ++G     +E+  V+ HI +LRK L      + V + R  GY  
Sbjct: 183 RAQLLDRVWGDH-VFIEDRTVDVHIRRLRKILETVGKENLVQTVRGTGYRF 232


>gi|183601802|ref|ZP_02963172.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190700|ref|YP_002968094.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196106|ref|YP_002969661.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219408|gb|EDT90049.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249092|gb|ACS46032.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250660|gb|ACS47599.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793689|gb|ADG33224.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 236

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 17/231 (7%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   +++  +A     G  +E   S      + S  + D+  ++  L         +
Sbjct: 2   VVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPD--IDGFTV 59

Query: 64  PRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +  
Sbjct: 60  TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 119

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   ++ 
Sbjct: 120 VEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW- 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
            +D   +  +VES+IS LRKK+ +    D           +++KR +GY I
Sbjct: 179 QYDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMI 229


>gi|147676478|ref|YP_001210693.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272575|dbj|BAF58324.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 233

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD  +V++        +G  +           L +  + D+  ++  L   G   
Sbjct: 5   LILVVDDEEVVRELVRHCLVREGFKVITTADAYGAFDLIARLKPDLIILDILLP--GLDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R +R  ++VP+I +S        +     G DD + KP    E++ARV A  RRLK
Sbjct: 63  IEFCRKLRMKNEVPVIFLSAKGDSSDIILGLGVGGDDYIVKPFVPGELVARVKARLRRLK 122

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         +   + +  +G    V G    L  +E  IL  L  N  +     Q
Sbjct: 123 PGEETAAGREPKMLKYRGLEIDLEGHAVLVDGSAVALAPKEFEILALLAKNPNRVFKNEQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   I+   D A +   +  HIS+LRKK+  +      + + R +GY  
Sbjct: 183 LLDLIWQSKDFA-DNRTLMVHISRLRKKIEKDPNNPAYIQTVRGVGYKF 230


>gi|113866325|ref|YP_724814.1| DNA-binding response regulator CreB [Ralstonia eutropha H16]
 gi|113525101|emb|CAJ91446.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 232

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +     DG+  E             +   D+  ++  L        
Sbjct: 9   ILVVEDEQAIADTILYALRTDGMLAEHCTLGGAALERMRAGAADLVILDVGLPD--LSGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S  P++ ++        +   + G DD V KP   RE+ ARV AI RR + 
Sbjct: 67  EVCRTLRTFSNAPVVFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               A    E        DG     +G    L R E  +L +L+ + G+  ++ Q+   +
Sbjct: 127 GGATAAKSDEVAGFTHDKDGARLAYRGRWLELTRYEYLLLAWLVTHPGRIYSRAQLMECV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221
           +        +  V++HI  LR KLR     G + + + R +GYS++
Sbjct: 187 W-EDALDTSDRTVDTHIKTLRAKLREASADGAERIRTHRGMGYSLE 231


>gi|83311994|ref|YP_422258.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82946835|dbj|BAE51699.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 225

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D +           + G  ++   +     +L +S R D   I+  L   G   L
Sbjct: 3   ILLIEDDSEAAAYMAKGLREAGHVVDHAATGTDGLFLATSERWDAMIIDRMLP--GLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA  +  P++ +S    +   +    +G DD + KP    E+LAR+ A+ RR+ 
Sbjct: 61  AIIQALRAAGNTTPVLVLSALGKVDDRVRGLKAGGDDYLVKPYAFAELLARIEALSRRVS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R +   + +    R     G+   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 STQPETRLKVEDLEMDLLARTVTRGGQEIDLQPREFRLLEYLMRHGGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + N+++ HIS+LR+K+        + + R  GY++
Sbjct: 181 -EYHFDPQTNLIDVHISRLRQKVDKDFELPLIHTVRGAGYTL 221


>gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08]
          Length = 227

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   ++    +L    G  +E   +  E  EW+ +++ + + A     +      L
Sbjct: 8   LVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAATSPDLLVADVVMPV---MDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R++RA    VP++ ++    +   +   D+G DD ++KP    E+LAR+ A+ RR  
Sbjct: 65  GLCRMLRAAGNAVPILLLTARSDVADCVAGLDAGADDYLSKPFEPDELLARLRAMARRTT 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  + A    + +  +       G    L   E  IL  L  N  + +++ QI  A++G
Sbjct: 125 HLPASPAGYDDLELVPEAHAVRQNGRWIDLSSTEYAILCVLAENPEQALSRGQISDAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N +E +IS LR+KL  +     + + R +GY +
Sbjct: 185 -YAMTPASNSLEVYISYLRRKLEAEGEPRIIQTVRGVGYRL 224


>gi|302521422|ref|ZP_07273764.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|333024929|ref|ZP_08452993.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|302430317|gb|EFL02133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|332744781|gb|EGJ75222.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 229

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLP--GRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 68  VCRLIRAESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 225


>gi|296536395|ref|ZP_06898497.1| response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296263277|gb|EFH09800.1| response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 226

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A V         + G ++E   +     ++ +    D+  ++  L G G   +
Sbjct: 3   ILLVEDDAEVGRFVKKGLQEAGHTVEHAANGRDGLFMAAGESFDLLVLDRMLPG-GVDGV 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L   +R   +  P++ +S    +   +    +G DD + KP    E+LARV A+ RR  
Sbjct: 62  RLVETLRGQGNHTPVLFLSALGGVDERVKGLKAGGDDYLVKPFAFAELLARVEALGRRPA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +     R +   + +    R     G    +  RE R+LE+LM + G+ V +T +   ++
Sbjct: 122 VDAPATRLKVADLELDLLSRTVTRAGRKIDIQPREFRLLEHLMRHAGQVVTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR+KL        + + R  GY I
Sbjct: 182 D-YHFDPQTNVIDVHVSRLRQKLDKGQDKPLIHTVRNAGYMI 222


>gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 235

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +  +    L  S   D   ++  L       +
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAFDLALSKPFDFIILDVMLPN--LDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE+LAR+ AI+RRL+
Sbjct: 62  EITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLE 121

Query: 121 VSN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          + G I+         V GE   L  +E  +L Y M  +G+ + + 
Sbjct: 122 PRQQAREEDQPAEILQIGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + + I+  FD   +  +V+ HIS LR+KL  +    + + + R  GY  
Sbjct: 182 TLLNRIWN-FDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKF 230


>gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 247

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 103/228 (45%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD A ++          G  +    + + EE L++      D+  ++  +      
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYDV--VTAADGEEALETFRQTSPDLVVLDVMMP--KLD 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+
Sbjct: 68  GYGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRV 127

Query: 120 K-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +        S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++
Sbjct: 128 EKNGAPGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSE 187

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           I   ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 188 ILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 235


>gi|152975977|ref|YP_001375494.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024729|gb|ABS22499.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 225

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +    + + ++ L+  A   +  I   ++        
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEV--IEAEDGKQALELFAEHTIDLIMLDIMLPEIDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R   +
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +N      I V    R   V G+   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEDNVLSAAGIDVNRLSRTVFVDGKEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFE 224


>gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 252

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 94/236 (39%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +      L      D+  ++  L        
Sbjct: 14  LLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQNDPDLLVLDVMLPD--MDGF 71

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A   +P++ ++        +     G DD V KP    E++AR+ A+ RR  
Sbjct: 72  TVTRRLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 131

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +         G + +  D  +    G    L   E ++L YLM N  + ++K+QI   
Sbjct: 132 ALDEEDDAVLNAGDLELDDDTHEVRRAGIYIDLSPTEFKLLRYLMLNANRVLSKSQILDH 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------------PVDSKRFLGYSI 220
           ++  +D   +  +VES+IS LR+K+      D             + +KR +GY +
Sbjct: 192 VW-EYDFGGDTGIVESYISYLRRKIDVAPETDEAGNPIDMEWTPMIQTKRGVGYML 246


>gi|258543851|ref|ZP_05704085.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis
           ATCC 15826]
 gi|258520891|gb|EEV89750.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis
           ATCC 15826]
          Length = 229

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V         + G  ++  ++      +  S + D+  ++  L       L 
Sbjct: 4   LIIEDDKDVAAYITKGLSESGYVVDAAHTGTEGLSMAQSGQYDILIVDRMLPE--LDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R      P++ +S    +   ++   +G DD + KP    E+LARV A+ RR   
Sbjct: 62  VIEKLRKDGMSTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQALTRRRGG 121

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   +++    R     G    L  RE R+LEYLM+N G+ V +T +   ++
Sbjct: 122 EIQDQMMLEVADLQLDRLKRKVTRSGRKINLQPREFRLLEYLMSNAGQVVTRTMLLEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + ++R  GYS+
Sbjct: 182 -EYHFDPQTNVIDVHISRLRSKIDKDFDPPLIHTERGAGYSL 222


>gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 244

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +       D+   +   +    ++ L+   +    A+   L+  G   L
Sbjct: 7   ILIVEDDADIANVLALHLRDERYEV--VHCANGDDGLRRLEQGGWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I IS   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +    R E G +R+    R+  V G    L  RE  +L +   + GK  ++T +
Sbjct: 125 ALSRDTRAEAGRVEVGGLRLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRTDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKL 231


>gi|52081822|ref|YP_080613.1| two-component response regulator YvrH [Bacillus licheniformis ATCC
           14580]
 gi|52787209|ref|YP_093038.1| YvrH [Bacillus licheniformis ATCC 14580]
 gi|319647739|ref|ZP_08001957.1| YvrH protein [Bacillus sp. BT1B_CT2]
 gi|52005033|gb|AAU24975.1| two-component response regulator YvrH [Bacillus licheniformis ATCC
           14580]
 gi|52349711|gb|AAU42345.1| YvrH [Bacillus licheniformis ATCC 14580]
 gi|317390080|gb|EFV70889.1| YvrH protein [Bacillus sp. BT1B_CT2]
          Length = 242

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 98/231 (42%), Gaps = 11/231 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +   +G S E   +   EE L    ++ V  I   ++  G+   
Sbjct: 6   ILIVDDEDAIVQMVKRVLTKEGFS-EVLTASSAEEALDIVKKDTVHLILLDVMMPGQTGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IR H+  P+  ++   S    L  F  G DD + KP +  E++AR+ A  +R  +
Sbjct: 65  DVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKRTYI 124

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               A        E        D  +  V GE      +  ++L+Y   +  + ++K QI
Sbjct: 125 HKEVAAASVSSAYEYERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLSKDQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +  ++G+     + N V  HI KLR+K+  +    + + + R LGY    N
Sbjct: 185 YEKVWGVP-SYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVPN 234


>gi|219668194|ref|YP_002458629.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538454|gb|ACL20193.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++        D+G              L  S + D+  ++  +       L
Sbjct: 5   ILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELFKSKQVDLILLDIMMP--KLDGL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR   S+V +I ++   +    L  ++ G DD + KP   + ++A++ A+ +R  
Sbjct: 63  SVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKRAD 122

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E G + +        + GE   L  +E  +L  L+ N+ + + +  + + 
Sbjct: 123 AGAQETPELYEVGRLAINQLSHTVTLAGEPIELTPKEFELLVCLVRNKQRVLTREMMMNL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G ++   +   V+SHI +LR+KL  K     + + R  GY ++
Sbjct: 183 VWG-YEYYGDLRNVDSHIKRLRQKL--KSEGRLITTVRGSGYKLE 224


>gi|329910114|ref|ZP_08275240.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546267|gb|EGF31298.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 231

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       D G S     +++      +    ++  ++  L       L
Sbjct: 8   ILLVEDEPGIAELLQFTLADAGFSSHNAMTVQEARLAIAEQLPEIVLLDWMLPD--GSGL 65

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R  R+ +     P+I ++     +  +   ++G DD + KP   RE++AR+ ++ RR
Sbjct: 66  TLLREWRSTAATAVLPVIMLTANGMDEDKVRGLNAGADDYITKPFSPRELVARIHSLLRR 125

Query: 119 LKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   +R     G I + ++     V      L + E R+L++L+A+  +  +++Q+   
Sbjct: 126 NRADASRPGNIYGTIVIDTERHLVTVADVPVKLDQSEFRLLKFLVAHPARVFSRSQLLDK 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  +  +EE  V+ HI +LRK L    G   + + R +GY +D
Sbjct: 186 VWG-DEAFLEERTVDVHIMRLRKSLGVAAG--YIKTVRSIGYLMD 227


>gi|218885985|ref|YP_002435306.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756939|gb|ACL07838.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 230

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 100/227 (44%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +       F   G  +    +    E L+ + R+  + +   L+  G   L
Sbjct: 6   ILVVEDDEDILQLLTFTFESAGFEVRTATTGR--EGLEIALRQKPALVLLDLMLPGMSGL 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R ++       VP+I ++        +   + G DD V KP   RE++ R+ A+ +R
Sbjct: 64  DVCRELKRMPETEDVPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIRAVLKR 123

Query: 119 LK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +        ++ +   + +  D    EV GE   L   E R+L  L+ NRG+   + Q+
Sbjct: 124 AQGVAENPQRSQWQIDGLALDLDAHRVEVDGEEAALTATEFRLLAELVRNRGRVRTRDQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G ++       V++H+ +LR+K+        +++ R +GY  
Sbjct: 184 LNTVWG-YEFEGYARTVDTHVRRLRQKIGGYAA--MIETIRGVGYRF 227


>gi|170760407|ref|YP_001785600.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
 gi|169407396|gb|ACA55807.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
          Length = 231

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       +DG  +  F +    + L    +E +  +   ++  G   L+
Sbjct: 5   LIVDDEVEIIELMEVYLLNDGYKV--FKATNGLDALNIINKEKIHLVILDIMMPGIDGLQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR    +P+I +S        +    +G DD + KP    E+LARV A  RR    
Sbjct: 63  VCMKIRKEYNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRRYVYL 122

Query: 123 NN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           N            E   I +        + G    L   E +IL  L +N GK  +   I
Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGAELKLTPTEYKILLLLASNSGKVFSAEDI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +  I+         N V +HI +LR+KL +       V++   +GY I+
Sbjct: 183 YKEIWAEKYFEGN-NTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230


>gi|257871361|ref|ZP_05651014.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257805525|gb|EEV34347.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 229

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++G   E   + + +E L       D+  +   ++      
Sbjct: 3   ILVADDDKEIVELLSIYLHNEGY--EAVKAYDGKEALTKIRTTPDIELLILDIMMPEMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR K
Sbjct: 61  MQVVKELRKESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 120

Query: 121 VSN-----NRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       +  E   + +  D  +   + G    L   E  IL  L ++  +  +  +IF
Sbjct: 121 MQAPSNQPDILEVSSLIINRDSHEVKTITGNEIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 181 ERVWKQ-ESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKID 227


>gi|257439801|ref|ZP_05615556.1| phosphate regulon response regulator PhoB [Faecalibacterium
           prausnitzii A2-165]
 gi|257197710|gb|EEU95994.1| phosphate regulon response regulator PhoB [Faecalibacterium
           prausnitzii A2-165]
          Length = 229

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D A +++         G  ++ F + E       +A  ++  ++  L   GE  
Sbjct: 1   MIYIVEDDAAIRELEQYALQSSGYGVQSFETSEPFWQAMRAAEPELVILDVMLP--GEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             + + +R      ++P+I ++   S   T+   D G DD + KP    E L+RV A  R
Sbjct: 59  FSILKKLRNTPALRRLPIIMVTAKSSELDTVRGLDCGADDYITKPFGIMEFLSRVRAALR 118

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R       N      I + +      V G    L  +E  +L  L+ N    V +  I  
Sbjct: 119 RSAPEEKQNVYAFHEILLDNARHSVTVNGTHIDLTYKEYSLLRLLLENTNLVVTRETILQ 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++G  D +VE   V+ HI  LRKKL +      + + R +GY +  N
Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAG--RYICTVRKVGYKLADN 223


>gi|169647646|gb|ACA61821.1| LRA-16 [uncultured bacterium BLR16]
          Length = 231

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G     F S             D+  ++  L   G+  L
Sbjct: 8   ILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLP--GKNGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA S VP+  ++        L   + G DD + KP   RE++AR+ A++RR++ 
Sbjct: 66  EVCKEIRAFSTVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQ 125

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                      ++    +    + +   L   E R+L+ L++N G+  +++Q+    Y  
Sbjct: 126 IGVPEPTRTGFQIDEAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYSRSQLLDLCYQQ 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDWN 223
               ++  V++SHI  LRKK+   L  G + + +   +GY  + +
Sbjct: 186 EQLIID-RVIDSHIKNLRKKISTALPPGQEVIHAVYGIGYRFEVS 229


>gi|239638181|ref|ZP_04679133.1| heme response regulator HssR [Staphylococcus warneri L37603]
 gi|239596202|gb|EEQ78747.1| heme response regulator HssR [Staphylococcus warneri L37603]
          Length = 224

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 100/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +  +     +        + E       +   D++ ++  +   G    E
Sbjct: 5   LIVDDDPKILNYVVTHLEKEHFYTYTHTNGEEALHFLDNHPVDIAIVDIMM--HGMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L  +I+    +P+I ++   +L      F SG DD + KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCHMIKEVYDLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIYRIKAVLRRYHIH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++     G + +     +  V G+   LP +E ++L  L +N  +  ++T +   I+G +
Sbjct: 123 ADETLTIGNLTLHQAYMEVVVNGKTMTLPNKEFQLLFLLASNEKQIFSRTHLIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  ++ HI +LR++L+       + + R  GY ++
Sbjct: 182 DYEGDERTIDVHIKRLRQRLQQLDSDVTIKTVRGQGYKVE 221


>gi|226312203|ref|YP_002772097.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095151|dbj|BAH43593.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   +    +G  +    + +    + ++       ++  L        
Sbjct: 4   ILLVDDEPQILEILSSYLQKEGYHVLTAQTGKEAVEMATTISLTCIILDLMLPD--LSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+   IR  S+VP++ ++        +     G DD + KP   RE++ARV A+ RR   
Sbjct: 62  EVCVQIRKESRVPILMLTAKSGEADRIRGLTIGADDYLIKPFSPRELVARVRAVMRRAGD 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++  E G + +  + +     G    +   E R+L  L+   G+   + ++   + 
Sbjct: 122 YSTLSDFVEVGDLTISMNEKRVTKNGVALEVTPNEYRLLTTLVRYPGRTWGREELVREVM 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G FD    +  +++HI  LR+K+  +    + + +   LGY  D
Sbjct: 182 G-FDFEGYDRTIDTHIKNLRQKIEADPKQPEYIKTVYGLGYRFD 224


>gi|170755164|ref|YP_001779900.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169120376|gb|ACA44212.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 228

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   ++D        +G S E   +    + + Q   + D+  ++  L       
Sbjct: 4   ILIIEDDEDIRDILKLYL--EGQSYEILEAENGAKAMKQLVKQPDLVILDLMLPD--IDG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR     P+I I+   + Q  +     G DD + KP +  E++ARV A  RR K
Sbjct: 60  LSICKSIRKKYYYPIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYK 119

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +             + +    +   +  +   L   E +ILE L+  +G+ ++  ++F
Sbjct: 120 QYDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEALLKRKGEVLSGEELF 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + I+     +   N +  H+  LR+K+ +     + + +   +GY I+
Sbjct: 180 NLIWEDEYYSKSTNTITVHVRNLREKMDDSFEKPEYIKTVWGVGYIIE 227


>gi|257061994|ref|YP_003139882.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256592160|gb|ACV03047.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 224

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         +   +++     E    L  +   D+  ++  L       + 
Sbjct: 4   LLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLP--KLDGIS 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R     +P++ ++   + +  +   D G DD V KP    E+ AR+ A+ RR   
Sbjct: 62  LCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGNT 121

Query: 122 SNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S++       + +  +        +   L  +E  +LE  + N    ++++ I   ++  
Sbjct: 122 SSSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWSF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            D   EE  V+ HI +LRKKLRN     D +++   LGY +
Sbjct: 182 EDPPSEE-AVKVHIKELRKKLRNVGSLPDFIETVYGLGYRL 221


>gi|119025586|ref|YP_909431.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154487046|ref|ZP_02028453.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
 gi|118765170|dbj|BAF39349.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084909|gb|EDN83954.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
          Length = 243

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 101/233 (43%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIERLQPDLIVLDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 QQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKK-----LRNKLGFD-----PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK     + ++ G        +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIVIEDENGDKHKVTPLIETKRGIGYMI 238


>gi|301054717|ref|YP_003792928.1| transcriptional regulator [Bacillus anthracis CI]
 gi|300376886|gb|ADK05790.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 226

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDELDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GINGLQ 63

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 222


>gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 225

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G S+           L      D+  ++  +   G    
Sbjct: 5   ILIVEDEADIRELLRFNLEREGFSVLEAADGNEALRLARQHLPDLMLLDVMMP--GPDGF 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R++ A ++    P++ ++        +     G DD V KP   RE++ R+ A+ RR
Sbjct: 63  EICRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVLRR 122

Query: 119 LKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              S      E   IR+  D    E  GE   L   E R+LE L+ + G    + Q+ + 
Sbjct: 123 GTRSGESPVLERHGIRLRPDAHTAEAHGEELQLTATEFRLLEDLLRHAGSVRTREQLLNK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +        V++H+ +LR KL +      +++ R +GY I
Sbjct: 183 VWG-YSFEGYARTVDTHVRRLRAKLGHA--ASMLETVRGVGYRI 223


>gi|167758878|ref|ZP_02431005.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
 gi|167663618|gb|EDS07748.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +  F + +  E L+   +E++      ++      ++
Sbjct: 7   LIVEDDKEIREGVEIYLKSQGYQV--FQAADGVEGLKIIEKEEIHLAIVDVMMPRMDGIQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR +  
Sbjct: 65  MTIKLREKYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRKF 124

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S++    G + +  D  +  V GE   +   E +IL  LM N G+  +  +
Sbjct: 125 AEKLNQREASSSVYTIGGLEINEDTVEVTVDGESVKMTPMEYKILLLLMKNPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   + AV  + +  H+  +R+K+  N      +     +GY I+
Sbjct: 185 IYERVWN--ERAVNTDTIMVHVRNIREKIEINPKEPKYLKVVWGVGYKIE 232


>gi|58039296|ref|YP_191260.1| two component response regulator [Gluconobacter oxydans 621H]
 gi|58001710|gb|AAW60604.1| Two component response regulator [Gluconobacter oxydans 621H]
          Length = 226

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V+   +    + G  ++  ++ +   +L  S   DV  ++  L G G   L
Sbjct: 3   ILLVEDDPTVRAFVLKGLREAGHVVDEADNGKDGLFLAVSENYDVVILDRMLPG-GIDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P++ +S    +   +    +G DD + KP    E+LARV A+ RR +
Sbjct: 62  RILETLRGQKNATPVLLLSALADVDERVAGLKAGGDDYMTKPFAFSELLARVEALGRRGR 121

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R   G + +    R  +  GE   L  RE R+LE+L+ + G+ V +T +   +
Sbjct: 122 PESAPQTRLVVGDLEMDLLSRTVKRGGEKIDLQPREFRLLEFLIRHAGQVVTRTMLLERV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H+S+LR+K+        + + R  GY +
Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFDKPMIHTIRNAGYIL 223


>gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 219

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +++            +    ++  ++  L       L
Sbjct: 3   ILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPR--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL + +RA    VP++ ++   +    +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   I +    +    QG    LPR+E  +L  L+A  G+ + + ++   +YG
Sbjct: 121 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +DE VE N +E HI  LRKK       + + + R +GY +D
Sbjct: 181 -WDEDVESNALEVHIHHLRKK----FFPELIRTVRGVGYLVD 217


>gi|271501522|ref|YP_003334548.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270345077|gb|ACZ77842.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 243

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G         E  E         +  ++  L   G   L 
Sbjct: 17  LIVEDEPKLAQLLVDYLQASGYRTHWLTQGEEVEPWVREHPCQLILLDLMLP--GRDGLT 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I ++        L   + G DD + KP   RE++ARV  + RR +  
Sbjct: 75  LCRAIRGFSNVPIIMVTARTEEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 134

Query: 123 NNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + +  +       G    L   E R+L+ L A  G+  ++ Q+   +Y 
Sbjct: 135 HEPLPNDVLPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 194

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 195 DY-RVVTDRTIDSHIKNLRRKLEVFDRETSFIRTVYGIGYRWE 236


>gi|288555474|ref|YP_003427409.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288546634|gb|ADC50517.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 246

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    + + E+ L+  A      +   L+       
Sbjct: 16  ILVIEDDREISKILNEYLIREGYKV--VMAHDGEDGLRRFASIHPHLLLVDLMLPKVDGF 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S+VP+I +S   S    +     G DD + KP    E++ARV +  RR   
Sbjct: 74  EVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYHR 133

Query: 122 SNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N             + + ++ R  E  G+   L  +E  +L  L    G+  +K Q+++
Sbjct: 134 YNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLYN 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            ++   D+A +   V  HI  +R+KL +       +D+   +GY  
Sbjct: 194 RVWKQ-DDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKF 238


>gi|257887006|ref|ZP_05666659.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257898161|ref|ZP_05677814.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|293377839|ref|ZP_06624024.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293570561|ref|ZP_06681613.1| transcriptional regulatory protein ResD [Enterococcus faecium E980]
 gi|257823060|gb|EEV49992.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257836073|gb|EEV61147.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|291609349|gb|EFF38619.1| transcriptional regulatory protein ResD [Enterococcus faecium E980]
 gi|292643549|gb|EFF61674.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 238

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 103/237 (43%), Gaps = 23/237 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   V +     F ++G       +G   L+   +L++    D+  ++  L    
Sbjct: 3   ILMIEDNQSVSEMMQMFFLNEGWEATFKYDGKEGLDA--FLENPQHWDMITLDLNLPT-- 58

Query: 58  EKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              + + R IR   S VP+I ++   S    +   + G DD V KP     ++AR+ A++
Sbjct: 59  MDGMLVGREIRKVSSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALH 118

Query: 117 RRLKVSNNR-----------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANR 164
           RR +++  R            ET   ++ +  R+  +       L  +E  +L  L    
Sbjct: 119 RRSELAEAREEAAVSDDHFDIETSHFKMNTKTREAYLDNRPIEGLTPKEFDLLFTLAKKP 178

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 179 RQVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 233


>gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 243

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 104/226 (46%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L+   ++D   +   ++       
Sbjct: 9   ILVVDDEASIRRILETRLSMIGYDV--VTAADGEEALEVFRKQDPDLVVLDVMMPKLDGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 67  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S++         + G +R+ ++ R    + E   L   E  +LE L++  G+  ++ +I 
Sbjct: 127 SSHEGIPSSGVIQVGDLRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRAEIL 186

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 232


>gi|78058361|gb|ABB17540.1| VanRG2 [Enterococcus faecalis]
          Length = 232

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F +         S   D+  ++  L        
Sbjct: 5   ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGTDALKCIESQNLDLVILDVMLPDV--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E++ARV    RR   
Sbjct: 63  RICQKIREQYFYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVR 122

Query: 122 SNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N             +   + +  +     + G+   L   E  IL YL  ++GK V+  
Sbjct: 123 YNQPINKQALENIEYDIRGLSINKNNHKCSLFGKELQLTPIEFSILWYLCDHQGKVVSSE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++F A++         N V +HI +LR+K++        + +   +GY+I+
Sbjct: 183 ELFEAVWKEK-YLDNNNTVMAHIGRLREKMKEPAKKPKFIKTVWGVGYTIE 232


>gi|329927392|ref|ZP_08281651.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328938531|gb|EGG34916.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 235

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 14/228 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEKV 60
           ++I+D   +           G S   F +    + LQ   + + D   ++  L       
Sbjct: 8   LIIEDERDISRIVNDYLRVQGFS--TFITENARDGLQGVRNRQPDFIILDLTLPDA--DG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ R +R  +  P++ +S   S    +     G DD + KP    E++ARV A  RR+ 
Sbjct: 64  IEVCRELRTLTSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMA 123

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +      G + +    R          L  +E  +L +L +N  +   KTQ+ 
Sbjct: 124 DPKLQAATQQLLRFGTLSIDKSARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
             ++G +   VE+N +  +I +LR+KL         + +   +GY  D
Sbjct: 184 DQVWG-YSAYVEDNTITVYIRRLREKLERSGIKSAYITTVWGVGYKFD 230


>gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 239

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD+  + +        +G  +    + + E+ LQ    +DV      ++       
Sbjct: 6   IMIIDDQPEILELVSFTLQKEGYDV--IPAEDAEKALQELKEKDVDMFIVDIMLPNMDGF 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  R IRA  +    P+I +S        +   + G DD + KP   RE+LAR+ A++RR
Sbjct: 64  EFVRTIRAKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAVFRR 123

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +++          +     + +  D  +  V+G+   L   E  +L +L  N GK  ++ 
Sbjct: 124 MQLGTVVKEEKPKKIVAKDLEIDIDKYEVRVKGKKVSLTPLEFDLLRFLAENEGKVFSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +   ++G +D   +   V+ HI +LR K+ +       V + R  GY  
Sbjct: 184 VLLDKLWG-YDYFGDTRTVDVHIRRLRTKIEDDPSNPRYVVTVRGKGYKF 232


>gi|228996503|ref|ZP_04156142.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228763135|gb|EEM12043.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 210

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 13/203 (6%)

Query: 28  GFNSLEFEEW-----LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           G+   E E       +  +   D   ++  +         + + IR  S VP+I ++   
Sbjct: 13  GYEWGEAENGKDALHMLDTDHYDFVILDIMMPQ--MDGTSVCKEIRKTSDVPIIFLTAKG 70

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRD 139
                ++    G DD + KP    E++AR+ A+ RR           + G I +    R 
Sbjct: 71  EEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEELQFGSIVINEKSRR 130

Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199
            E+ GE   L  +E  +L +L  + G+  ++ Q+   ++G +D A     V++H+  +R 
Sbjct: 131 IEIDGEPISLTVKEFDLLYFLCGHNGQVFSREQLLEKVWG-YDYAGSTRTVDTHVKTMRL 189

Query: 200 KLRNKLGFDPVDSKRFLGYSIDW 222
           KL      + + +   +GY  + 
Sbjct: 190 KLGESG--NYIQTVWGVGYKFEV 210


>gi|146281237|ref|YP_001171390.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145569442|gb|ABP78548.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
 gi|327479394|gb|AEA82704.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 221

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A     G + +        E+  ++   D+  ++  L   G+  L
Sbjct: 3   LLLVEDNVPLADELVASLSRQGYATDWLTDGRDAEYQGATEPYDLIILDLGLP--GKPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+    RA     P++ ++   S    +D   +G DD + KP H  E+L R+ A+ RR  
Sbjct: 61  EVLHAWRAAGVTTPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELLLRIQALLRRAH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   + G + +    +     G+   L   E R+L Y M + G+ ++KTQ+   +Y
Sbjct: 121 GLANQPMLQAGGLELDESRQCCRKDGQDIELTAGEFRLLRYFMLHPGQLLSKTQLTEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   + NV+E H+++LR KL    G + ++++R  GY  
Sbjct: 181 DG-ETERDSNVIEVHVNRLRGKL----GRELIETRRGQGYRF 217


>gi|81428827|ref|YP_395827.1| two component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104608|gb|AAD10267.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78610469|emb|CAI55519.1| Two component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 246

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 104/241 (43%), Gaps = 25/241 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEF-EEWLQSSAREDVSAIEAFLIGKGEK 59
            ++++D   V +     F  +       ++  E  E++       D+  ++  L   G  
Sbjct: 3   ILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLP--GMD 60

Query: 60  VLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++ + IR  S+V P+I ++   S    +   + G DD V KP     ++AR+ A++RR
Sbjct: 61  GMQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 120

Query: 119 LKVSNNR-----------------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYL 160
            ++ + +                  +T   ++ S  R+  +  E    L  +E  +L+ L
Sbjct: 121 AELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTL 180

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             N  +  ++ Q+   ++  +    +E  V++HI KLR+K+   +G   + +   +GY  
Sbjct: 181 AKNPRQVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIEE-VGPQVIQTVWGVGYKF 238

Query: 221 D 221
           D
Sbjct: 239 D 239


>gi|330504485|ref|YP_004381354.1| DNA-binding response regulator [Pseudomonas mendocina NK-01]
 gi|328918771|gb|AEB59602.1| DNA-binding response regulator [Pseudomonas mendocina NK-01]
          Length = 218

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +++            S    +++ ++  L       L
Sbjct: 3   ILLVEDDQALGEGIRTALKPEGYTVDWLQDGASALHALSHESFELAILDLGLPR--MDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + ++A +  VP++ ++   +    +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  QVLKHLQAAANPVPVLVLTARDATSDRIAGLDAGADDYLIKPFDVAELKARLRALLRRSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E   IR+    +  E QG+   LPR+E  +L  L+   G+ + + ++  A+YG
Sbjct: 121 QRPQPALEYRGIRLDPASQVVEYQGQTINLPRKEFLLLHELLIQPGRVLTRDKLQQALYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +DE VE N +E H+  LRKK       + + + R +GY +D
Sbjct: 181 -WDEEVESNALEVHVHHLRKK----FFPELIRTVRGVGYLVD 217


>gi|328886560|emb|CCA59799.1| putative response regulator [Streptomyces venezuelae ATCC 10712]
          Length = 269

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +         G ++E            +    D+  ++  L   G   L
Sbjct: 13  ILVVEDDPTVAEVVTGYLERAGCAVEHAADGPEALRRAAERWADLIVLDLMLP--GLDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +RA   VP+I ++     +  +   + G DD V KP   RE++ RV ++ RR + 
Sbjct: 71  EVCRRLRATGPVPVIMLTARGDQEDRITGLEVGADDYVTKPFSPRELVLRVESVLRRTRT 130

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + V +  R     G    L  RE  +L Y + +     ++ 
Sbjct: 131 TAARATPAVAPRPVLRAGDLTVDTATRRATRAGAELGLTLREFDLLAYFLEHPRTAHSRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            +   ++G   +  + + V  H+ +LR K+         +++   +GY  +
Sbjct: 191 ALMRRVWGW--DFGDLSTVTVHVRRLRAKIEQDPARPRLIETVWGVGYRFE 239


>gi|309951515|gb|ADO95181.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium sp. M14]
          Length = 230

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G  +E     E  + +   +  D+  ++  L   G   +EL
Sbjct: 7   IVEDEEALSVLLRYNLEAEGYLVETIGHGEEADIVLQESVPDLLILDWMLP--GVSGIEL 64

Query: 64  PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R +RA       P+I ++        +    +G DD + KP    E++ARV A+ RR K
Sbjct: 65  CRRLRARPNTERLPVIMLTARGEETERVRGLATGADDYLVKPFSTPELMARVRALLRRSK 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  ++      I +  +      +     L   E R+L++LMA+ G+  ++ Q+   ++
Sbjct: 125 PALISSILRYADIELDRESHRVHRERREVRLGPTEFRLLDFLMASPGRVFSRAQLLDGVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  V+E  V+ H+ +LRK L      D + + R  GYS+D
Sbjct: 185 G-HDLYVDERTVDVHVGRLRKALNFANKPDLIRTVRGAGYSMD 226


>gi|307298063|ref|ZP_07577867.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916149|gb|EFN46532.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 224

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 11/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       ++ +      + E       S + DV  ++  L       L+
Sbjct: 4   LIVDDDLDILNIVRTACENESMQTSTAANAEELWSSLRSEKPDVILLDIMLPDA--NGLD 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + IR  +S++P+I ++   S    +   + G DD V KP + R ++AR+ A+ RR ++
Sbjct: 62  LVKKIRTMYSRIPIIFLTARKSDLDMILGLELGADDYVTKPFNPRALVARIKAVMRRTEI 121

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S    ++   G   V          G+   L RRE  +L+ L  N G+   + ++   ++
Sbjct: 122 SGTLEDKLTIGDAVVNLKSYTVTKNGKSEELTRREFELLKLLAENPGRVFTREELLDKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+ D   +   V+ HISKLR+K    +G   + + R +GY  
Sbjct: 182 GM-DFFGDFRTVDVHISKLREK----VGEGFIKTVRGVGYKF 218


>gi|326317102|ref|YP_004234774.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373938|gb|ADX46207.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 230

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 101/224 (45%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D        +G  ++   +      L  +    +  ++  L   G   L
Sbjct: 6   ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLELARAGEATLLILDVMLP--GMTGL 63

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +L + +RA   QVP++ ++   S++  +     G DD + KP    E+LAR+ A+ RR  
Sbjct: 64  DLCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGR 123

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    R +   + +  +       G    L  +E   LE LM+  G+  ++ +I S +
Sbjct: 124 EQRPRATRLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+ ++ +  NVV+ ++ +LR K+        + + R LGY +D
Sbjct: 184 WGMHEDPL-TNVVDVYVRRLRSKIDEGHPLALLKTVRGLGYRLD 226


>gi|229133604|ref|ZP_04262431.1| Sensor histidine kinase [Bacillus cereus BDRD-ST196]
 gi|228650004|gb|EEL06012.1| Sensor histidine kinase [Bacillus cereus BDRD-ST196]
          Length = 231

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 12/218 (5%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +       ++G ++  + + + +E LQ     +V  +   ++      L + + +R ++ 
Sbjct: 16  ELLAVYLRNEGYNI--YKAYDGDEALQMICTYEVDLMLLDIMMPKRNGLAVCQEVRENNT 73

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----- 127
           VP++ +S        +    +G DD + KP +  E++ARV A+ RR    N  ++     
Sbjct: 74  VPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDG 133

Query: 128 ---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 + +       +V GE   L   E  IL  L +N G+  +  +IF  ++   D  
Sbjct: 134 IIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNE-DGY 192

Query: 185 VEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
                V  HIS LR KL   + G   + +   +GY I+
Sbjct: 193 GSNKTVMVHISNLRDKLETVMNGEKLIHTVWGVGYKIE 230


>gi|153956437|ref|YP_001397202.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146349295|gb|EDK35831.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +  S++  +     + L    + D   I   ++  G    
Sbjct: 5   ILVIDDDKELCALIRQSVAVE--SIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP++ ++      + +    SG DD + KP    E++ARV ++ RR   
Sbjct: 63  QTMEKIRQTSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       + +  D R    Q   F LP +E  +L +   N+GK + K QI+ 
Sbjct: 123 FNTTGDHSQPLTYQGLTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            ++G      + N + + IS+LRKK+    G    + + + +GY  +
Sbjct: 183 EVWGEAYVYDDSN-IMAIISRLRKKIEPDSGAPYYIQTVKGIGYRFN 228


>gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
 gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
          Length = 223

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       + G  +E          L  S + D+  ++  L   G   L+
Sbjct: 5   LLVEDDDSIGELVTYYLKNKGYDVEWVQDGLEARELLKSRKYDIIVLDLMLP--GVNGLD 62

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R +R        P+I ++      T +   ++G DD V KP   +E+LAR+ A+ RR 
Sbjct: 63  LCREVRLRGINKDTPIIVLTAIGDEDTKVHGLEAGADDYVTKPFSIKELLARIEAVLRRA 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E   I      +   V G+   L + E ++LE+ + +  +  ++ ++   I+G
Sbjct: 123 GYS-EVLEFEGIVEDKRSKSVTVDGKPIHLTKTELQLLEFFLEHPEQLFSREELLEKIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +         V+ +IS+LRKKL +K     + +   LGY +
Sbjct: 182 VEHNET-TRTVDVYISRLRKKLGDKG--KFLKTLPRLGYKL 219


>gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus ATCC 19977]
 gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus]
          Length = 247

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +         G  +   +S      L  + R D   ++  +   G     
Sbjct: 24  LVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLARTVRPDAVILDVMMP--GMDGFG 81

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P + ++    LQ  +     G DD V KP    E++AR+  I RR  +
Sbjct: 82  VLRRLRADGIDAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVARLRVILRRSGM 141

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +      R     I +  D  +    GE   L   E  +L Y M N G  ++K +I   
Sbjct: 142 GSEPARKSRLSFADIELDEDTHEVWKAGEPVALSPTEFTLLRYFMINAGTVLSKPKILDH 201

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ N      + + R +GY +
Sbjct: 202 VW-RYDFGGDVNVVESYVSYLRRKIDN-GEKRLLHTLRGVGYVL 243


>gi|123442021|ref|YP_001006004.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332162074|ref|YP_004298651.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122088982|emb|CAL11793.1| response regulator protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318606122|emb|CBY27620.1| transcriptional regulatory protein PhoP [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666304|gb|ADZ42948.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860072|emb|CBX70398.1| transcriptional regulatory protein phoP [Yersinia enterocolitica
           W22703]
          Length = 223

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLP--GEDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHEGEVITTIRGQGYRFDAN 223


>gi|104782688|ref|YP_609186.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95111675|emb|CAK16396.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 227

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G  A     G++++   S      +  +A+ DV  ++  L    E  L+
Sbjct: 4   LLCEDDDLIASGICAGLSAQGLTVDRVASASQARQMLQAAQFDVMILDLGLPD--EDGLK 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R +R   +  P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLRRLRQQGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N  E GP+          + G    L RRE+ +L+ L+ N G+ ++  Q+   +YG 
Sbjct: 122 RAVNVIEHGPLCYDPSSCVATLAGAPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL    G   V++ R LGY +
Sbjct: 182 SDE-VESNALNVHIHHLRRKL----GNGIVETVRGLGYRL 216


>gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2]
          Length = 251

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 94/236 (39%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +      L      D+  ++  L        
Sbjct: 13  LLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTNPDLLVLDVMLPD--MDGF 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ ++        +     G DD V KP    E++AR+ A+ RR +
Sbjct: 71  TVTRRLRQIGMNAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTR 130

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N     G + +  D  +    G +  L   E ++L YLM N  + ++K+QI   
Sbjct: 131 SLEDEENAVIMAGDLELDDDTHEVRRSGILIDLSPTEFKLLRYLMLNTNRVLSKSQILDH 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------------PVDSKRFLGYSI 220
           ++  +D   +  +VES+IS LR+K+      D             + +KR +GY +
Sbjct: 191 VW-EYDFGGDTGIVESYISYLRRKIDVTPETDAAGHPVEMEWTPMIQTKRGVGYML 245


>gi|270264670|ref|ZP_06192935.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041353|gb|EFA14452.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 238

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +     +              +  ++  L   G   L
Sbjct: 10  IMIVEDEPKLGQLLVDYLQAAGYATRWLTNGSEVVPAVHEHSPALILLDLMLP--GSDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + R +R  + VP++ ++        L   + G DD + KP   RE++ARV  I RR  +
Sbjct: 68  TVCRELRRFTDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYR 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N+ E   + +         QG++  L   E R+L+ L +  G   ++ Q+ + +Y  
Sbjct: 128 PLENQQEETQLHIDEPRFQASYQGQMLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDD 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +   V +  ++SHI  LR+KL    G    + S   +GY  +
Sbjct: 188 Y-RVVTDRTIDSHIKNLRRKLELIDGEKSFIRSVYGVGYRWE 228


>gi|257866229|ref|ZP_05645882.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873257|ref|ZP_05652910.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257875864|ref|ZP_05655517.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325567671|ref|ZP_08144338.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|257800187|gb|EEV29215.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257807421|gb|EEV36243.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257810030|gb|EEV38850.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325159104|gb|EGC71250.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 241

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++G  S++ ++  E    +++++  ++  ++  +       
Sbjct: 15  ILVADDDKEIVELLSIYLHNEGYESVKAYDGKEALTKIRTTSDIELLILDIMMPE--MDG 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR K
Sbjct: 73  MQVVKELRKESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 132

Query: 121 VSN-----NRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +          E   + +  D  +   V G    L   E  IL  L ++  +  +  +IF
Sbjct: 133 MQAASNQPEILEVSSLIINRDSHEVKTVDGNEIQLTALEFGILYLLASHPNRVFSADEIF 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 193 ERVWKQ-ESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKID 239


>gi|254283288|ref|ZP_04958256.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR51-B]
 gi|219679491|gb|EED35840.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR51-B]
          Length = 236

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D                +++     L    R D+  ++  L   G   +
Sbjct: 6   ILVVDDEYAIRDMLRMALEIADFDCIETDNISDAHSLVVDERPDLVLLDWMLP--GGSGI 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++   A   +P+I ++   +    +   + G DD + KP   RE++AR+ A+ RR
Sbjct: 64  ELLRRLKRSEATRAIPVIMLTAKSAEDNVIQGLEVGADDYLTKPFAPRELVARIKALLRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    N R     + + +DGR   +  +   +   E  +L + M +  +  +++Q+   
Sbjct: 124 SQGMEDNQRLAFEELLLDADGRRVYLADKPISMGPTEYNLLYFFMTHPERAYSRSQLLDH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
           ++G  +  VEE  V+ HI +LRK L++        + + R  GY  
Sbjct: 184 VWGA-NVYVEERTVDVHIRRLRKALQSHGKDYSGLIQTVRGTGYRF 228


>gi|254422271|ref|ZP_05035989.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189760|gb|EDX84724.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D    L    G S++  +  E    +  S + D+  ++  L       L
Sbjct: 3   ILLVDDEVELTDPLSHLLRRQGYSVDVASDGETGAQMAISGQYDLLILDRML--SKMSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+ +   P++ ++   +L   +D  D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  EICQKVRSQALSTPVLFLTAKDTLDDRVDGLDAGADDYLVKPFELRELLARVRALLRRPG 120

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S +  +   +++  + +     G+   L  +E ++L YLM +  + +   QI+ A
Sbjct: 121 SPSVASPSILQFEDLKLQVENQLVSRNGKSIELSDKEVQLLAYLMRSPHQLLTHAQIYDA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G    A   N + + +  LRKK+        + +    GY +
Sbjct: 181 VWGEG-SAPSSNTLAAQMRLLRKKIEQPGQPVLIHTVYGKGYRL 223


>gi|329928026|ref|ZP_08282030.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|328938130|gb|EGG34527.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 226

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 105/221 (47%), Gaps = 3/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       + G+  E   + +  E L    +  V  +   ++       
Sbjct: 4   ILVVDDDPNIRELIKVFLEEAGME-EVMEASDGVEALSVMEQVSVDLVVMDIMMPNMDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR ++ +P++ ++     +  +  F+ G DD + KP    E++ RV A+ +R +V
Sbjct: 63  ELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQV 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++    G +++     + +   EVF LP +E  +L  L +  G  + + ++   I+G 
Sbjct: 123 AASQTVTIGKLQMNRRTYEVKAGEEVFTLPLKEFELLFKLASYPGSTLPRDRLIEEIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D    E  ++ H+++LR++   +     + + R LGY ++
Sbjct: 182 YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLE 222


>gi|295426129|ref|ZP_06818796.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064165|gb|EFG55106.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 228

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 103/228 (45%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  ++  E    L ++   D++ +   ++      
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLITT--PDIALMILDIMMPNMSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S +P+I +S   S    +    +G DD V+KP +  E++ARV ++ RR +
Sbjct: 61  IEVIKEVRKDSDIPIIVVSAKTSDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 KQVKDEKPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|269128240|ref|YP_003301610.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313198|gb|ACY99572.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +  +         R D+  ++  L   G   ++
Sbjct: 6   LVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETRPDLVLLDLMLP--GADGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRQIRAESGVPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARMRARLRRTEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    + G I +   G   +   +  PL   E  +L  L     +   +  +   ++G +
Sbjct: 124 APETLQIGDITIDVAGHSVKRGDKTIPLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221


>gi|56420814|ref|YP_148132.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380656|dbj|BAD76564.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 241

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 97/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++   + +  E L+ +   D   I   L+  G+  +
Sbjct: 10  ILVVDDEERIRRLLKMYLERENYVID--EAGDGNEALEKALTNDYDVILLDLMLPGKDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IRA    P++ ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 68  EVCKEIRAQKTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D     V G+   L  +E  +L +L  +  K   + Q
Sbjct: 128 AAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++HI +LR+KL   +      + +   +GY  +
Sbjct: 188 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237


>gi|330812221|ref|YP_004356683.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380329|gb|AEA71679.1| putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 226

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G      +        Q SA  D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLVFALQGEGFDTTWLSLGAAALEHQKSAPADLIILDVGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S VP+I ++        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCKNLRRFSDVPVIFLTARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRVAP 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                + T   +V +D      +G+   L R E R+L  L+    +  ++ Q+  A+ G+
Sbjct: 122 RPAAESSTALFQVDADRVQINYRGKPLNLTRHEFRLLNCLLEQPERVFSREQLLDAL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             +A  E  ++SHI  +R KLR  +   +P+ + R LGYS
Sbjct: 181 ASDAGYERSIDSHIKSVRAKLRLVRAEAEPIQTHRGLGYS 220


>gi|163815964|ref|ZP_02207334.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759]
 gi|158448774|gb|EDP25769.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759]
          Length = 224

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++  +    + G ++E F + +      +    D+  ++  L       L
Sbjct: 5   IYIVEDDKNIREIEMFALKNSGYAVEEFENAKSFFSKTAEKVPDLVLLDIMLPD--MDGL 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + +R+       P+I ++   +    +   D G DD + KP    E+++RV A+ RR
Sbjct: 63  EIVKKLRSRPDTVRIPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRR 122

Query: 119 LKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   +  +   G I + S+ R+  V GE+  L  +E  +L+ LM N G  + +  I S 
Sbjct: 123 SRALQDDKQLVIGDITLDSERREVHVGGELCELTFKEFELLKLLMVNAGIVLHRDTIMSD 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D   E   ++ HI  LR+KL      + + + R +GY ++
Sbjct: 183 VWGT-DYEGESRTLDMHIKTLRQKLGEAG--NMIKTVRNVGYKME 224


>gi|254975257|ref|ZP_05271729.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092647|ref|ZP_05322125.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314384|ref|ZP_05355967.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517062|ref|ZP_05384738.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650166|ref|ZP_05397068.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683289|ref|YP_003214574.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686885|ref|YP_003218018.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520160|ref|ZP_07406507.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260209452|emb|CBA62960.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212901|emb|CBE04143.1| two-component response regulator [Clostridium difficile R20291]
          Length = 233

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G ++  F + +       S   D++ ++  L        
Sbjct: 5   ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKDLDMAILDIMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E++ARV    RR   
Sbjct: 63  HICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMR 122

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            NN  E             + +  +     + G+   L   E  IL YL  ++GK V   
Sbjct: 123 YNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++F A++G        N V +HI +LR+K+         + +   +GY+I+
Sbjct: 183 ELFEAVWGEK-YLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIE 232


>gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 247

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L +    D   +   ++       
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYDV--VTAADGEEALDTFRNTDPDLVVLDVMMPKLDGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 70  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 129

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 130 NGASGIPSSGVIHVTNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 189

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 235


>gi|161614708|ref|YP_001588673.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552644|ref|ZP_02346396.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168233471|ref|ZP_02658529.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237152|ref|ZP_02662210.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168467538|ref|ZP_02701375.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821792|ref|ZP_02833792.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194469497|ref|ZP_03075481.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734514|ref|YP_002114094.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250090|ref|YP_002145965.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|200390714|ref|ZP_03217325.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|238911082|ref|ZP_04654919.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|161364072|gb|ABX67840.1| hypothetical protein SPAB_02459 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194455861|gb|EDX44700.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710016|gb|ACF89237.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630054|gb|EDX48706.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213793|gb|ACH51190.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197289769|gb|EDY29130.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199603159|gb|EDZ01705.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205322771|gb|EDZ10610.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205332481|gb|EDZ19245.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341764|gb|EDZ28528.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 226

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|28377603|ref|NP_784495.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254555781|ref|YP_003062198.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300767564|ref|ZP_07077474.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179756|ref|YP_003923884.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28270436|emb|CAD63338.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254044708|gb|ACT61501.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300494549|gb|EFK29707.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045247|gb|ADN97790.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 242

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 18/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +    + +  + L     +  + I   L+      +
Sbjct: 6   ILVVDDEPAIVTLLSYNLKQAGYEV--VTATDGADALSLGLAQSFTCILLDLMLPKLDGM 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    Q P+I ++        +   + G DD + KP   RE+LAR+ A+ RR  
Sbjct: 64  EVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTT 123

Query: 121 VSNNRAE-------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                                G +++  +       G+   L  +E  +L Y +   G+ 
Sbjct: 124 PDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           +++  I + ++G +D A E  +V+ HIS LR+K+  +      + + R  GY
Sbjct: 184 LSRDAILNHVWG-YDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGY 234


>gi|319938297|ref|ZP_08012694.1| two-component system response regulator [Coprobacillus sp. 29_1]
 gi|319806590|gb|EFW03248.1| two-component system response regulator [Coprobacillus sp. 29_1]
          Length = 224

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G S+   +  E    +  +   D++ ++  +        
Sbjct: 5   ILVVDDEEHIRELIRFYLDKEGFSVREASGGEEALGILENEYIDLAIVDIMMPV--MDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   ++    +P+I ++        L  F  G+DD V KP    E+LARV  I +R  +
Sbjct: 63  QLVEEMKEFKDIPVIMLTAKSQSADKLRGFSLGIDDYVTKPFDPDELLARVKTILKRYSI 122

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S N  +   +    D  +     E   LP ++  +   L  N  +   + Q+   I+G+
Sbjct: 123 NSQNIVQIQDVIFDGDKYEIRYHDETLHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D    +  V+ HI ++R+ L +  GF  V + R LGY I+ 
Sbjct: 183 -DYDGFDRTVDVHIKRIRENLGHLPGFKVV-TVRGLGYKIEV 222


>gi|73662569|ref|YP_301350.1| respiratory response protein SrrA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495084|dbj|BAE18405.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 241

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 95/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   N  +  E  + +   D + I   L+      +
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEAN--DGNEAYRMAMEHDYACILLDLMLPEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R H + P+I ++        ++ F+SG DD + KP   RE++ RV A+ RR +V
Sbjct: 63  TVASKLREHKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQV 122

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +             E   + + +D       G    L  +E  +L +L     K   + Q
Sbjct: 123 ATAEQSEPHARDLIEFDHLVIDNDAHRVLADGSQVNLTPKEYELLIFLAKTPNKVFDREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++H+ +LR+KL   ++     + +   +GY  +
Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFE 232


>gi|46202620|ref|ZP_00052911.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 225

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D +           + G  ++   +     +L +S R D   I+  L   G   L
Sbjct: 3   ILLIEDDSEAAAYMAKGLREAGHVIDHAATGTDGLFLATSERWDAMIIDRMLP--GLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA  +  P++ +S    +   +    +G DD + KP    E+LAR+ A+ RR+ 
Sbjct: 61  SIIQALRAAGNTTPVLVLSALGKVDDRVRGLKAGGDDYLVKPYAFAELLARIEALSRRVS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R +   + +    R     G+   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 STQPETRLKVEDLEMDLLARAVTRGGQEIDLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + N+++ HIS+LR+K+        + + R  GY++
Sbjct: 181 -EYHFDPQTNLIDVHISRLRQKVDKDFELPLIHTVRGAGYTL 221


>gi|49484576|ref|YP_041800.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257423843|ref|ZP_05600272.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426526|ref|ZP_05602928.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431808|ref|ZP_05608171.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257434768|ref|ZP_05610819.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282902273|ref|ZP_06310166.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906702|ref|ZP_06314550.1| heme response regulator hssR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909678|ref|ZP_06317487.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911924|ref|ZP_06319720.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282915220|ref|ZP_06322997.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M899]
 gi|282920944|ref|ZP_06328662.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925850|ref|ZP_06333498.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C101]
 gi|283959142|ref|ZP_06376583.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497616|ref|ZP_06665470.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511195|ref|ZP_06669891.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus M809]
 gi|293549803|ref|ZP_06672475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428942|ref|ZP_06821566.1| two-component system response regulator colocalized with HrtAB
           transporter [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|81696435|sp|Q6GE73|HSSR_STAAR RecName: Full=Heme response regulator hssR
 gi|49242705|emb|CAG41429.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272861|gb|EEV04963.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276157|gb|EEV07608.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257282687|gb|EEV12819.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285364|gb|EEV15480.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282312679|gb|EFB43083.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315359|gb|EFB45743.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C427]
 gi|282320941|gb|EFB51275.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M899]
 gi|282323620|gb|EFB53936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326252|gb|EFB56556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329601|gb|EFB59122.1| heme response regulator hssR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596732|gb|EFC01691.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           C160]
 gi|283788734|gb|EFC27561.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290918850|gb|EFD95926.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096547|gb|EFE26805.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465821|gb|EFF08351.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus M809]
 gi|295127291|gb|EFG56933.1| two-component system response regulator colocalized with HrtAB
           transporter [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|315193627|gb|EFU24023.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 224

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 101/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +  + F     E  L+   ++ V      ++  G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHI--DAFTQPSGEAALKLLEKQRVDIAVVDIMMDGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN+    G + +     + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|260776888|ref|ZP_05885782.1| two component response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606554|gb|EEX32828.1| two component response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 223

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +       + G SL      +      +S   DV   +  L       +
Sbjct: 3   LLLVEDDAEIAEFIHKGLTEQGHSLCHEPDAKTGLVRAASESFDVIIFDRMLPS--MDGI 60

Query: 62  ELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +  R++R  SQV  P++ ++   S+   +   ++G DD + KP    E+ ARV A+ RR 
Sbjct: 61  DAIRVLRQ-SQVHSPILILTAKDSIGDRVAGLEAGADDYMVKPFAFEELNARVKALARRQ 119

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  ++ +   GP+ +    R     G    L  RE +ILE LM N+G+ V +T +   +
Sbjct: 120 PVSQASTQLTAGPLTLDKLSRKVTHSGTEVDLLPREYQILELLMVNQGELVTRTMLLEQV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G F      ++V++H+S+LR K+      + + + R  GY +
Sbjct: 180 WG-FQFDPNTSLVQTHVSRLRNKVDKAFNTELIKTVRGAGYVL 221


>gi|153812004|ref|ZP_01964672.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
 gi|149831903|gb|EDM86989.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G  +E  N  +    L+ +  ED   I   L+       
Sbjct: 4   ILIIEDEEAIADLEKDYLELSGFEVEIANRGDV--GLEKALNEDYDLIILDLMLPEVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +R    +P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  DICRQVRQEKNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V N+  E   I++    R   V GE      +E  +L +L  N  +   K ++F
Sbjct: 122 LVGSSAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 RQIWDM-ESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|109897848|ref|YP_661103.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109700129|gb|ABG40049.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 230

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +     +G + +  ++ +  E    +   D   ++  L   G+  L
Sbjct: 7   ILIVEDEPKIAQILVDFLTIEGFATQVVHNGDEAEDAIRTKTPDCVILDLMLP--GKDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  SQVP+I ++        L     G DD V KP   RE++ARV AI RR   
Sbjct: 65  SICKDVRKFSQVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQAILRRATF 124

Query: 122 SNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +              I + ++  + E+  +V  L   E R+L+ LM+  G   ++  +  
Sbjct: 125 AAPSSDETCILTFKHISLNTERFECEINKQVTELTPVEFRLLKTLMSRPGTVFSRESLMQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           + Y      V    ++SH+  LR K+       P+  S   +GY +
Sbjct: 185 SCY-EDARIVSNRTIDSHMKNLRNKVALTNDPQPILQSVYGVGYKL 229


>gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++IDD   + D         G ++    +   +E ++ +    D+  ++  +       
Sbjct: 4   ILIIDDEKEIADLLKDSLERKGNTV--LTAYNGKEGIEKAKEMPDLIVLDIMMPD--IDG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR     P++ +S   S    +  F  G DD V KP   +E+LAR+ A  RR K
Sbjct: 60  YEVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREK 119

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +                I +    R+  V+G    L ++E  +LE L  + G+  +K Q
Sbjct: 120 RAILLNEEKKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           I+  ++G FD   +   V  HI  +R K+       + + +   +GY  +
Sbjct: 180 IYEKVWG-FDAEGDTTTVTEHIKNIRAKIGGFDPDTEYIKTVWGIGYKWE 228


>gi|187777708|ref|ZP_02994181.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC
           15579]
 gi|187774636|gb|EDU38438.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G ++  F +   +E L+   RE+V+ +   ++      L
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNV--FKARCGKEALEILEREEVNLMVLDIMMPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ +  R    +P++ +S        ++   +G DD V KP +H E+  R+ A+ RR   
Sbjct: 63  EVCKRAREKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + ++N      + +        +      L  RE  IL  L  NRG+  +  +IF
Sbjct: 123 LNTKMQTTDNIIRIESMVIDKKQHKVMIDDNEIDLTAREFEILYLLANNRGRVFSAEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++         N V  H+S+LR K+   + G   + +   +GY I+
Sbjct: 183 EKVWKER-YYQSNNTVMVHMSRLRDKIEKYMEGSKVIHTVWGVGYKIE 229


>gi|160894924|ref|ZP_02075698.1| hypothetical protein CLOL250_02474 [Clostridium sp. L2-50]
 gi|156863355|gb|EDO56786.1| hypothetical protein CLOL250_02474 [Clostridium sp. L2-50]
          Length = 226

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +G +    +  ++       +    L      D++ ++  L   G    
Sbjct: 9   ILLVEDEAGIAEGIMDYMKESEITFTWAADGDEALALVYEHEYDLALLDVMLP--GADGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP+I ++     +  L  +D G DD V KP    E+ A++ +  RR K 
Sbjct: 67  EICRAIRAKSYVPIIFLTARGREEDRLYGYDLGCDDYVVKPFSMAELQAKIQSFLRRSKG 126

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N   + G I+++ D    E  GE   L  +E  +L+YLM ++G  V +  +   ++
Sbjct: 127 LWTKNQVIQVGDIKMYPDRLLVEAAGEEVRLAPKEYAMLKYLMEHKGMIVTRDDMLVRLW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D    + VV++H+ KLRK L +      + +    GY ++
Sbjct: 187 G-YDYDGGDRVVDNHVKKLRKALGDSG--KLIKTVFAKGYRME 226


>gi|118478501|ref|YP_895652.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417726|gb|ABK86145.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 236

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GINGLQ 73

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 74  VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 232


>gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 248

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 83  QVLRALRTAHQSPAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240


>gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 243

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++    + + EE L++   E    +   ++       
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYNV--VTAADGEEALETFREEVPDLVVLDVMMPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       +R+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 TSTSGIPSSGVIAVSNLRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGY 231


>gi|261404369|ref|YP_003240610.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261280832|gb|ACX62803.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 239

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 19/232 (8%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD   +++   A    +G    G  + E    +  +   D+  ++  L   G   
Sbjct: 6   LIAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIMLP--GMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
            EL R IRA ++VP+I IS   S    +   + G DD + KP   RE++AR+        
Sbjct: 64  FELCRRIRAEAEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSRWY 123

Query: 118 ---------RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                    RL  ++     G +++  + R     GE   +  +E  +L     +  +  
Sbjct: 124 KFNRAENVPRLAAASPELSNGRLQLQLEERRVFWNGEEVDMTNKEFEMLRVFAEHPNRAF 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++ ++++G  D    +  V+  I +LRKK+       P+++    GY +
Sbjct: 184 TRDELLTSVWG-DDYFGSDRAVDHLIKRLRKKVEQL----PIEAIWGHGYRM 230


>gi|170760105|ref|YP_001787670.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407094|gb|ACA55505.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 235

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G  + + F+ LE  E  Q      +  ++  +       
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQ-GENYHMVIMDIMMPV--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R IR  S+VP+I +S        +     G DD + KP    E++ARV    RR  
Sbjct: 63  IESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAI 122

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N           E G ++   +      +G+   L  +E +IL+    N  +   K Q
Sbjct: 123 YYNETKSIKENKIYEYGDVKFDMNNYIVTKEGKELTLTAKEMKILKLFFENPNRVFTKVQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I+ +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 183 IYDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|118587742|ref|ZP_01545152.1| probable transcription regulator protein [Stappia aggregata IAM
           12614]
 gi|118439364|gb|EAV45995.1| probable transcription regulator protein [Stappia aggregata IAM
           12614]
          Length = 237

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +    +A   + G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 18  ILVVEDDTDLNRQLVAALEEAGYVVDSATDGEDGHFLGDTEPYDAVVLDLGLPSLDGLSV 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  R  R    +P++ ++        +   D+G DD V KP H  E+LARV A+ RR  
Sbjct: 78  LENWR--RDGRTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 135

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G +R+        V G    L   E R+L YL+ ++GK +++T++   +Y 
Sbjct: 136 GHASNELTCGAVRLDLRSGRVTVDGSAVKLTSHEYRLLSYLLHHQGKVISRTELTEHLYD 195

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N VE  + +LRKK+    G D +++ R LGY +
Sbjct: 196 Q-DFDRDSNTVEVFVGRLRKKI----GSDMIETIRGLGYRL 231


>gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 226

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYMVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 237

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 106/228 (46%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A V         ++G  +    + +    + S+ + D+  ++  L       L
Sbjct: 8   ILLVEDDAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANKFDLLILDIMLPE--MNGL 65

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R  ++ VP++ ++   S +      +SG DD + KP    E++ARV ++ RR +
Sbjct: 66  EICKAVREENTHVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRRSR 125

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                + +N      I+V    +     G+   L   E ++L   +   G+ +++T++  
Sbjct: 126 NFNSNIPDNSYRFSDIKVNDSSKTVTRNGKKIALTSTEYKLLLAFLKAPGRVISRTELLE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++G+ +  +  NVV+ +++ LRKKL  +     + +   +GY +  +
Sbjct: 186 NVWGV-NYDIGTNVVDVYVNYLRKKLEKENNDRLIHTVIGMGYVLKED 232


>gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 242

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L++  + +   +   ++       
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDV--VTAGDGEEALETFRKSEPDLVVLDVMMPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|148546459|ref|YP_001266561.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148510517|gb|ABQ77377.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|313497543|gb|ADR58909.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 225

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++       G+ G  +E     E   +       D++ I+  L   G   L
Sbjct: 3   LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGLP--GISGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL   +R+  +  P++ ++   + Q  ++   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +      L   E RILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFIQSTITAGPLVLDLNRKQATLDEHALALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE  + NV+E  + +LR+KL  + GF P+D+ R LGY
Sbjct: 180 PGDEERDPNVIEVLVGRLRRKLEGERGFKPIDTVRGLGY 218


>gi|298244230|ref|ZP_06968036.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551711|gb|EFH85576.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V          +G  +   ++ E    L  + R DV  ++  L   G   L
Sbjct: 11  ILIVDDETRVTSALRRSLAYEGYQVSSASNGEIALELARTRRPDVVILDIMLP--GMNGL 68

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +      P ++ ++   ++   +   + G DD + KP    E+LARV A+ RR +
Sbjct: 69  EVCRCLHQTQATPAILMLTARDTVADRVTGLEMGADDYLVKPFALEELLARVKALLRRKQ 128

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +    E      + + +  R       +  L   E  +L   + N    + +  +   I
Sbjct: 129 PTEVHGELLCFADLELDTATRQAHRGQRMIDLSTTEYELLTLFLRNPRVVLTRGLLMERI 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D     NV+E +I  LR KL  +     + + R  GY +
Sbjct: 189 WGN-DFEGSPNVLEVYIGHLRNKLEREGEQRLLQTIRGTGYVL 230


>gi|294142678|ref|YP_003558656.1| OmpR/PhoB family response regulator [Shewanella violacea DSS12]
 gi|293329147|dbj|BAJ03878.1| response regulator, OmpR/PhoB family [Shewanella violacea DSS12]
          Length = 246

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            +    +L+         + D+  I+  L       +
Sbjct: 16  ILIVEDEPDLANLIKLNLNTLSYGVSHSTTLKHARETLEIKQFDLILIDRMLPD--GDGI 73

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R   Q VP + ++   S    +   ++G DD + KP    E+ ARV A+ RR  
Sbjct: 74  MLCQQLRESGQTVPCMMLTAKDSEADIVLGLEAGADDYLVKPFSVLELRARVKALLRRSH 133

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +R +   I +    R+         L  RE  +L ++  +  +  ++ Q+  A
Sbjct: 134 LIEEQQESRLDFYGITINCTTREVIAFDTHLELTAREFDLLLFMAKHPKQVFSRMQLLEA 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G +  +  E+ V SHI++LR KL +     D V +   +GY  
Sbjct: 194 VWG-YSYSGYEHTVNSHINRLRAKLSHCASTADLVKTVWGVGYKF 237


>gi|254699263|ref|ZP_05161091.1| Protein petR [Brucella suis bv. 5 str. 513]
 gi|261749703|ref|ZP_05993412.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261739456|gb|EEY27382.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
          Length = 227

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 134/225 (59%), Positives = 168/225 (74%), Gaps = 4/225 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R +V +GY + FG +G++  GF   +F+EW++S   +D+ AIEAFLIG+    
Sbjct: 1   MIVVVDNRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR   + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR  
Sbjct: 61  HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S        + GPIRVFSDGRDP++ G  FPLPRRERRILEYL+ANRG+R+ K QIFSA
Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           IYG+FD  VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+
Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225


>gi|170016613|ref|YP_001727532.1| response regulator [Leuconostoc citreum KM20]
 gi|169803470|gb|ACA82088.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +   +  E    L ++    +  ++  +       
Sbjct: 3   ILVVDDDIEIAELLEIYLKNEGYEPVMAADGKEAISKLNTNPDIGLMILDVMMPN--MNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ +I+R  S+VP++ +S        +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 61  LEVVKIVRKDSRVPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAD 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 + +  + G + +  D  +     G++  L   E  IL  L ++  +  +   IF
Sbjct: 121 NAVQDKTPDVLDIGSLVINKDSHEVKTANGDIVNLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++   +  V    V  H+S LR K+     G   + +   +GY I+ N
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229


>gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34]
 gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34]
 gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR
 gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34]
 gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34]
 gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in
           Cd(II), Zn(II), Co(II) resistance [Cupriavidus
           metallidurans CH34]
          Length = 225

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     +       + G  ++  N+      +      DV  ++  L   G     
Sbjct: 4   LVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLP--GMDGWT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           + + IR+ S+ P++ ++    +   +  F+ G DD + KP    E+LAR+    R+    
Sbjct: 62  VIKSIRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSTSK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + R     + +   GR          L  +E  +L  LM  RG+ +++T I S ++G+ 
Sbjct: 122 ESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWGV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 NFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLD 220


>gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23]
 gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23]
 gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W]
 gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II]
          Length = 235

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +   +E     +       +   D   ++  L       L
Sbjct: 4   ILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEPFDFIILDLMLPS--LSGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR    Q P++ ++   +    +   + G DD V KP   REI+AR+ AI RR +
Sbjct: 62  DVTRKIREDKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQ 121

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      +++   G I +  +       G+   L  +E  +L Y     GK +++ 
Sbjct: 122 SQPQTSQKPGNSDQITVGQIAIDPENYKASKGGKRLQLTPKEFELLVYFAQRVGKTLSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            + + ++G FD   E  +V+  +S LR K+  +    D + + R  GY ++
Sbjct: 182 ALLNGVWG-FDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQME 231


>gi|295093634|emb|CBK82725.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 224

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 105/225 (46%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++  +    + G ++E F + +      +    D+  ++  L       L
Sbjct: 5   IYIVEDDKNIREIEMFALKNSGYAVEEFENAKSFFSRSAEKVPDLVLLDIMLPD--MDGL 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + +R+      VP+I ++   +    +   D G DD + KP    E+++RV A+ RR
Sbjct: 63  EIVKKLRSRPDTVRVPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRR 122

Query: 119 LKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   +  +   G I + S+ R+  V GE+  L  +E  +L+ LM N G  + +  I S 
Sbjct: 123 SRALQDDKQLVLGDITLDSERREVHVGGELCELTFKEFELLKLLMVNAGIVLHRDTIMSD 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D   E   ++ HI  LR+KL      + + + R +GY ++
Sbjct: 183 VWGT-DYEGESRTLDMHIKTLRQKLGEAG--NMIKTVRNVGYKME 224


>gi|91778717|ref|YP_553925.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91691377|gb|ABE34575.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 225

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G +++  N       L      DV  ++  L   G    
Sbjct: 3   ILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLP--GMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R     P++ ++    +   +   + G DD + KP    E+LARV  + RR   
Sbjct: 61  GVVKTLRTTRTTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   + G + +  + R  +  G    L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRTKIDDNFSVKLIHTVRGVGYVLE 220


>gi|239626588|ref|ZP_04669619.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516734|gb|EEQ56600.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 237

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++         G   EGF + E         + D++  +  L   G   +
Sbjct: 13  IYIIEDDENIRNLLKIALEGFGYGSEGFETAEEGLKRMKEEQPDMAIFDWMLP--GMDGI 70

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              + +R       +P++ ++        +   D G DD + KP    E+ AR+ ++ RR
Sbjct: 71  TAIKQVRQTDGLKDIPIMLLTAKEKELDKVIGLDCGADDYMVKPFGVLELSARIRSLLRR 130

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   +R       I V    R+    G    L  +E  +L YL+ N+ + V + ++ + 
Sbjct: 131 TRREESRDVLSYQGISVNRKTREVISSGHPCELTLKEFELLVYLLENQSRVVTRDELLNR 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G ++   E   ++ HI  LR+KL ++ G   + + R +GY +
Sbjct: 191 IWG-YEYDGETRTLDMHIRTLRQKLGDEGGS-CIKTVRGVGYRV 232


>gi|147676370|ref|YP_001210585.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272467|dbj|BAF58216.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 227

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +         ++G  ++          L    +  V  ++  +   G    E
Sbjct: 10  LLVDDEPNILQFLELGLQNEGFEVQTAQDGFTAINLMKQFQPHVVILDVMMP--GMDGFE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+++    V +I ++    +   +   + G DD + KP    E+LAR+ A   R +  
Sbjct: 68  VCRMLKKMENVAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHARV-RNQFP 126

Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           N       GP ++    ++ + +G V  L   E  +L+YL+ N G  ++K  I   ++G 
Sbjct: 127 NLFGEVAIGPFQIDDRRKEIKFEGRVLELSPTEYELLKYLVLNHGLVLSKRMILDKVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D A EEN+VE ++  LR+KL++K     + + R  GY +D
Sbjct: 186 YDFAGEENIVEVYVRSLREKLKDK-DHQIIRTLRGAGYRVD 225


>gi|313836289|gb|EFS74003.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928754|gb|EFS92585.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314971209|gb|EFT15307.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328906497|gb|EGG26272.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 232

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++         G  ++            S    D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPR--LDGL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R++R++ + VP++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR +
Sbjct: 63  EATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +  +     + +    R+         L R E  +L   + N  K + ++ + 
Sbjct: 123 PEPEQDEAPEQLSFADLTLDPGSREVTRGNRRISLTRTEFALLAVFLQNPEKVLERSWLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
             ++G FD     N +E +I  LR+K  +      + + R +GY + + N
Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDGEPRLIHTVRGVGYVLREAN 231


>gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 225

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVL 61
           +++DD   ++             +    + + EE +     E D+S +   ++       
Sbjct: 7   LVVDDEERMRKLISDFLKAKDFEV--LEAADGEEAIDLFFEEKDISLLILDVMMPKMDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR HS+VP+I ++        L  F+ G D+ ++KP   + ++ARV A+ RR  +
Sbjct: 65  AVLKSIREHSRVPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALLRRSGI 124

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G I +        V G+   L  +E  +L Y + NRG  +++ +I + ++  
Sbjct: 125 QQEETVSVGGIEIDKSAHSVRVDGKELELSFKEYELLLYFVENRGIALSREKILNNVWN- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +   +++H+ KLR KL++K   + + +   +GY  D
Sbjct: 184 YDYFGDARTIDTHVKKLRAKLKSKG--EYIRTVWGMGYKFD 222


>gi|162138420|ref|YP_541172.2| transcriptional regulatory protein YedW [Escherichia coli UTI89]
 gi|218558823|ref|YP_002391736.1| transcriptional regulatory protein YedW [Escherichia coli S88]
 gi|218365592|emb|CAR03319.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli S88]
 gi|309702255|emb|CBJ01572.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|323961816|gb|EGB57416.1| heavy metal response regulator [Escherichia coli H489]
          Length = 223

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYSF 218


>gi|332702026|ref|ZP_08422114.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552175|gb|EGJ49219.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 227

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 98/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   +   + +  E L  + R     I   L+  G    
Sbjct: 6   ILIVEDDEDILQLIKFNVESAGY--DAITASDGLEALNKARRHMPDLILLDLMLPGMDGF 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + ++  S+   +P++ ++        +   + G DD V KP   REI+ RV A+ RR
Sbjct: 64  EVCKELKRGSETGRIPILMLTARGEEVDRIVGLELGADDYVVKPFSPREIILRVRAVLRR 123

Query: 119 LKVSNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            K   +  ++     + V  +    E+  +   L   E ++L  L+ N G+ + + Q+ +
Sbjct: 124 NKGEEDVRQSWRRERLSVDMEAHRAEIDDQELLLTATEFKLLSELIRNPGRVLTREQLLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G ++       V++H+ +LR+KL +      V++ R +GY  
Sbjct: 184 TVWG-YEFEGYARTVDTHVRRLRQKLGDY--AKFVETVRGVGYRF 225


>gi|291558626|emb|CBL37426.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
          Length = 231

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D       ++   +  F           S   D++ ++  L        
Sbjct: 5   ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPD--MNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L ++IR     P+I ++        +     G DD V KP    E++ARV A  RR K 
Sbjct: 63  SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 122

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +         +      + +     +  + GE   L   E  IL  ++++ G  V+  +
Sbjct: 123 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVILSSAGNVVSIEE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +F A++     +   + +  HI  LR+KL +       + +   +GY I
Sbjct: 183 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 231


>gi|261416092|ref|YP_003249775.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372548|gb|ACX75293.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 225

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 14/228 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D A V++            +  F   +  +        D+  ++  L   GE  
Sbjct: 1   MIYIVEDDAEVREMETYALKSGSFDVMAFECGKVMDEQVKVKVPDLFILDIMLP--GEDG 58

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L + + +R       +P+I ++   +    +   D G DD + KP    E+++RV A+ R
Sbjct: 59  LSILKRLRGQENTKNIPVIMLTAKGTELDKVKGLDLGADDYIAKPFGILELISRVRAVLR 118

Query: 118 RLKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R    ++ +        G + +    R   V G    L  +E  +L+ LM+  G   ++ 
Sbjct: 119 RSGRGSSESTESLSLALGGVILDDQRRSVTVDGVAVELTFKEYELLKLLMSRPGTVFSRQ 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           QI   I+G+ D  ++   V+ H+  LR+KL        V + R +GY 
Sbjct: 179 QILEKIWGV-DFDMDTRTVDMHVKTLRQKLGAHGS--IVQTVRNVGYK 223


>gi|22124591|ref|NP_668014.1| DNA-binding transcriptional regulator BasR [Yersinia pestis KIM 10]
 gi|45440430|ref|NP_991969.1| DNA-binding transcriptional regulator BasR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594821|ref|YP_069012.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806055|ref|YP_649971.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Antiqua]
 gi|108813411|ref|YP_649178.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Nepal516]
 gi|145600803|ref|YP_001164879.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Pestoides F]
 gi|153948791|ref|YP_001402561.1| BasR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|153997284|ref|ZP_02022384.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|162418181|ref|YP_001608275.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Angola]
 gi|165928165|ref|ZP_02223997.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937403|ref|ZP_02225966.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011292|ref|ZP_02232190.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214025|ref|ZP_02240060.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401228|ref|ZP_02306728.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420653|ref|ZP_02312406.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423155|ref|ZP_02314908.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470191|ref|ZP_02334895.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis FV-1]
 gi|170025956|ref|YP_001722461.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis YPIII]
 gi|186893830|ref|YP_001870942.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930521|ref|YP_002348396.1| DNA-binding transcriptional regulator BasR [Yersinia pestis CO92]
 gi|229839160|ref|ZP_04459319.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896649|ref|ZP_04511816.1| two-component system response regulator [Yersinia pestis Pestoides
           A]
 gi|229899724|ref|ZP_04514865.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903886|ref|ZP_04518999.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|270489125|ref|ZP_06206199.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294505362|ref|YP_003569424.1| two-component system response regulator [Yersinia pestis Z176003]
 gi|21957394|gb|AAM84265.1|AE013670_2 transcriptional regulatory protein, member of 2-component
           regulatory system [Yersinia pestis KIM 10]
 gi|30314186|gb|AAP12460.1| BasR/PmrA-like two-component system response regulator [Yersinia
           pseudotuberculosis (type O:1b)]
 gi|45435287|gb|AAS60846.1| two-component system response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51588103|emb|CAH19709.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777059|gb|ABG19578.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108777968|gb|ABG12026.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|115349132|emb|CAL22095.1| two-component system response regulator [Yersinia pestis CO92]
 gi|145212499|gb|ABP41906.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149288921|gb|EDM39001.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|152960286|gb|ABS47747.1| transcriptional regulatory protein BasR/PmrA [Yersinia
           pseudotuberculosis IP 31758]
 gi|162350996|gb|ABX84944.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           Angola]
 gi|165914508|gb|EDR33122.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919852|gb|EDR37153.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989676|gb|EDR41977.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204820|gb|EDR49300.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961459|gb|EDR57480.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049253|gb|EDR60661.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057325|gb|EDR67071.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752490|gb|ACA70008.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186696856|gb|ACC87485.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229679656|gb|EEO75759.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|229687216|gb|EEO79291.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695526|gb|EEO85573.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700427|gb|EEO88459.1| two-component system response regulator [Yersinia pestis Pestoides
           A]
 gi|262363427|gb|ACY60148.1| two-component system response regulator [Yersinia pestis D106004]
 gi|262367198|gb|ACY63755.1| two-component system response regulator [Yersinia pestis D182038]
 gi|270337629|gb|EFA48406.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355821|gb|ADE66162.1| two-component system response regulator [Yersinia pestis Z176003]
 gi|320013711|gb|ADV97282.1| two-component system response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 220

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 107/221 (48%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +G   +   +      L  +++  +  ++  L  +   +L
Sbjct: 3   LLIVEDDELLQRGIAMALTSEGYVCDCAATAAEAHSLLQTSQYSMIILDLGLPDQDGTLL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR + 
Sbjct: 63  -LRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELLARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  +   + +    +   +QG+   +  +E  IL  L+   G+ V +  +   +Y  
Sbjct: 122 QSDNLVQQDDLSLNLSTQQVCLQGQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLY-T 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +++ +  N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 181 WNDDLSSNTLEVHIHNLRRKL----GKDRIRTVRGIGYRLE 217


>gi|332093078|gb|EGI98142.1| transcriptional activator protein irlR [Shigella boydii 5216-82]
          Length = 223

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNICITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|170783570|ref|YP_001740087.1| CheY-like response regulator [Arthrobacter sp. Chr15]
 gi|150035078|gb|ABR67074.1| CheY-like response regulator [Arthrobacter sp. Chr15]
          Length = 247

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         ++G +++            S    D   ++  L   G    E
Sbjct: 20  LVVEDEPKMAGLLRRGLAEEGYAVDVAADSPAGLSAASGGGYDAVVLDVMLP--GFPGFE 77

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R    +VP++ ++   ++   +   DSG DD + KP H  E+LAR+ A+ RR  +
Sbjct: 78  LCRRLRERGIEVPVLMLTARDAVDDRVRGLDSGADDYLAKPFHLEELLARLRALTRRGPL 137

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + R    G +R+ S+G           L  +E  +LE+ M   G+ + +  +    + L
Sbjct: 138 VSARGLVAGNLRLDSEGMRCWRGEAEVNLTAKEHALLEFFMEQPGRVLTREVLLENCWDL 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             EA   NVV+ H+  LR+K+  + G   +++ R +GY +
Sbjct: 198 AFEA-NSNVVDVHVRALREKIDRRFGVRSIETVRGVGYRL 236


>gi|126657203|ref|ZP_01728369.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126621474|gb|EAZ92185.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 225

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +    +E  +  +           D+  ++  L       +
Sbjct: 3   ILVVEDDENIIIPIEEYLDEQNYIVEIASDGQAAREFLDVFDYDLIVLDIMLP--KLDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA+  + P++ ++   +++  +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  SLCQQLRANGCKTPILMLTARDTIKDRVKGLDAGADDYLIKPFDLEELSARVRALLRRGE 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S       G + V     +   Q +V  L  +E R+LE+ + +  +  +++Q+   ++ 
Sbjct: 121 TSLPPILSWGELCVDPSSCEVTYQQQVLSLSPKEYRLLEFFLRHPRRMFSRSQLLDHLWA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           + D+  EE  V++HIS LR+KL+   L  D +++   LGY +
Sbjct: 181 M-DQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRL 221


>gi|30063407|ref|NP_837578.1| transcriptional regulatory protein YedW [Shigella flexneri 2a str.
           2457T]
 gi|56480011|ref|NP_707854.2| transcriptional regulatory protein YedW [Shigella flexneri 2a str.
           301]
 gi|161486196|ref|NP_754279.2| transcriptional regulatory protein YedW [Escherichia coli CFT073]
 gi|30041659|gb|AAP17387.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|56383562|gb|AAN43561.2| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|222033705|emb|CAP76446.1| transcriptional regulatory protein yedW [Escherichia coli LF82]
 gi|313649593|gb|EFS14017.1| transcriptional activator protein irlR [Shigella flexneri 2a str.
           2457T]
 gi|323186723|gb|EFZ72045.1| transcriptional activator protein irlR [Escherichia coli RN587/1]
 gi|332757540|gb|EGJ87875.1| transcriptional activator protein irlR [Shigella flexneri K-671]
 gi|333003072|gb|EGK22626.1| transcriptional activator protein irlR [Shigella flexneri VA-6]
 gi|333003228|gb|EGK22774.1| transcriptional activator protein irlR [Shigella flexneri K-218]
 gi|333004084|gb|EGK23618.1| transcriptional activator protein irlR [Shigella flexneri K-272]
 gi|333017619|gb|EGK36931.1| transcriptional activator protein irlR [Shigella flexneri K-304]
          Length = 223

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 104/223 (46%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++  +AL    G +     + +  E LQ    ++   +   ++       
Sbjct: 6   IMIVDDDPNIRELVLALLHRSGFA--ACEAADGREALQKMLNDNPDLVIIDVMMPNMDGF 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R +   +P+I ++    L + +  F  G DD + KP    E++ARV A+ RR K
Sbjct: 64  ELCRHLRRYYENLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALLRRYK 123

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++   +TG + +  +     + G    +P +E  ++  L    GK  ++ Q+   I+G
Sbjct: 124 IEASQVIQTGNVLIDKNSYSITLNGVREDIPLKEFELIFKLAGFPGKTFSRNQLIEDIWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D    E  ++ H+++LR +   +     + + R LGY ++ 
Sbjct: 184 V-DFEGNERTLDVHVNRLRDRFPEETAGFKITTVRGLGYRLEV 225


>gi|318056745|ref|ZP_07975468.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318080955|ref|ZP_07988287.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
          Length = 225

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLP--GRDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRLIRAESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + +G+   L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 221


>gi|228995879|ref|ZP_04155537.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
 gi|229003496|ref|ZP_04161314.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228757734|gb|EEM06961.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228763851|gb|EEM12740.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
          Length = 216

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 21/221 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           + ++GY      +G+  EG+N  +         + D+  ++  +  K     EL   IR 
Sbjct: 1   MEREGYEVYTAVNGI--EGWNVFQ-------QYQPDLIILDLMMPKK--DGWELCEEIRQ 49

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS------- 122
           +S VP+I ++     +  +     G DD V KP   RE++ RV  I RR   +       
Sbjct: 50  YSNVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQATIQEKEP 109

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   E   +++    R   V G    L  +E  +L  +  +  +  +++Q+   I+  F
Sbjct: 110 VSEMIEFLDLKIDPTKRRVFVCGHEIELTVKEFEVLYIMAKHPKQVFSRSQLLEQIWN-F 168

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +     N V   +S+LR+KL      +  + +   +GY  +
Sbjct: 169 EYEGCTNAVTVLMSRLREKLEKHTTKNRWIHTVWGIGYRFE 209


>gi|94498224|ref|ZP_01304785.1| two-component response regulator [Sphingomonas sp. SKA58]
 gi|94422354|gb|EAT07394.1| two-component response regulator [Sphingomonas sp. SKA58]
          Length = 221

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 105/222 (47%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++     E   +L S+   D   ++  L       L
Sbjct: 3   LLIVEDEPSLGHQLRTTLEGAGYAVDLATDGEDGHFLGSTESYDAVVLDLGLPT--IDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +    R   +  P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TVLDRWRKEGKTFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +      ++G+   L  +E ++L YL+ ++GK V++T++   IY 
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGDPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G D + + R LGYS+D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GADVITTIRGLGYSLD 217


>gi|58337917|ref|YP_194502.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227902916|ref|ZP_04020721.1| response regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58255234|gb|AAV43471.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227869332|gb|EEJ76753.1| response regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 233

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V          +G  +      +    L    +  +  ++  L       +
Sbjct: 8   ILLVEDEEAVASFVKTELEFEGYQVIWAQDGKEALELFQKEKPTLILLDWMLPV--YDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++   S        D G+DD + KP    E+ AR+  I RRL+ 
Sbjct: 66  TVLRRIRKKSEVPIIMLTAKNSTSDISSALDQGLDDYITKPFEIEELFARIRVILRRLEK 125

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           SN + E        GP ++     +     E   L  +E  ++  LM +  K  ++ ++ 
Sbjct: 126 SNKQKENSTISFNFGPFKIDLVKHEFFSNDEKIYLTPKEFALMTELMRDPEKVKSRDELL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   + N V+ +I  +R K+ +      + + R LGY +
Sbjct: 186 DVVWG-YDFVGQTNTVDVYIRTIRNKIGDP-NKKLIQTVRGLGYCL 229


>gi|296284705|ref|ZP_06862703.1| two-component response regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 225

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +    +G +++     E   +L S+   D   ++  L       L
Sbjct: 3   ILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHYLGSTEDYDAVILDLGLPE--IDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  + R   +  P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TVLGMWRKEGRRFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +        G+   L  +E ++L YLM ++GK V++T++   IY 
Sbjct: 121 GNTSSELTAGDVRLDTRSGRVTRGGDPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G + + + R LGYS+D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GAEVITTIRGLGYSLD 217


>gi|294509055|ref|YP_003565944.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
 gi|294352359|gb|ADE72681.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D    +F D G  +    +   E+ L Q     D+  ++  +       
Sbjct: 5   ILVVDDELEIVDIISDIFEDRGYRV--LKAYNGEQALDQLKTNVDLIILDVMMPQ--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L ++IR     P++ +S   S    +  F  G DD + KP   +E++ARV A  RR +
Sbjct: 61  FDLCKVIREQIYCPILFLSAKHSEMDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREQ 120

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + N+   G + +     D  + G+   L  +E +ILE L  N G+  +K QI+  
Sbjct: 121 RDRVSTQNQRLLGNLTINYSQHDVLLDGKKIDLTSKEFKILELLTVNLGQIFSKEQIYEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+G+ D   + N +  HI+ LR KL + +    + +   +GY ++
Sbjct: 181 IWGI-DAMGDLNTIIVHINNLRAKLTSGMSTYHIKTVWGVGYKLE 224


>gi|261417884|ref|YP_003251566.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319767304|ref|YP_004132805.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374341|gb|ACX77084.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317112170|gb|ADU94662.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 241

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 97/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++   + +  E L+ +   D   I   L+  G+  +
Sbjct: 10  ILVVDDEERIRRLLKMYLERENYVID--EAGDGNEALEKALTNDYDVILLDLMLPGKDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IRA    P++ ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 68  EVCKEIRAQKTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D     V G+   L  +E  +L +L  +  K   + Q
Sbjct: 128 AAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++HI +LR+KL   +      + +   +GY  +
Sbjct: 188 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237


>gi|161367585|ref|NP_288428.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. EDL933]
 gi|161984954|ref|YP_407518.2| transcriptional regulatory protein YedW [Shigella boydii Sb227]
 gi|162139781|ref|NP_310734.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. Sakai]
 gi|209919389|ref|YP_002293473.1| transcriptional regulatory protein YedW [Escherichia coli SE11]
 gi|218689962|ref|YP_002398174.1| transcriptional regulatory protein YedW [Escherichia coli ED1a]
 gi|218705460|ref|YP_002412979.1| transcriptional regulatory protein YedW [Escherichia coli UMN026]
 gi|254161973|ref|YP_003045081.1| transcriptional regulatory protein YedW [Escherichia coli B str.
           REL606]
 gi|254793621|ref|YP_003078458.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. TW14359]
 gi|256017840|ref|ZP_05431705.1| transcriptional regulatory protein YedW [Shigella sp. D9]
 gi|260844365|ref|YP_003222143.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O103:H2 str. 12009]
 gi|260855938|ref|YP_003229829.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O26:H11 str. 11368]
 gi|260868559|ref|YP_003234961.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O111:H- str. 11128]
 gi|312973814|ref|ZP_07787986.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|209912648|dbj|BAG77722.1| two-component response regulator [Escherichia coli SE11]
 gi|218427526|emb|CAR08421.2| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli ED1a]
 gi|218432557|emb|CAR13450.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli UMN026]
 gi|242377633|emb|CAQ32391.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BL21(DE3)]
 gi|253973874|gb|ACT39545.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli B str. REL606]
 gi|253978068|gb|ACT43738.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BL21(DE3)]
 gi|254593021|gb|ACT72382.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O157:H7 str. TW14359]
 gi|257754587|dbj|BAI26089.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O26:H11 str. 11368]
 gi|257759512|dbj|BAI31009.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O103:H2 str. 12009]
 gi|257764915|dbj|BAI36410.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O111:H- str. 11128]
 gi|310332409|gb|EFP99644.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|320647173|gb|EFX16006.1| transcriptional regulatory protein YedW [Escherichia coli O157:H-
           str. 493-89]
 gi|320652458|gb|EFX20756.1| transcriptional regulatory protein YedW [Escherichia coli O157:H-
           str. H 2687]
 gi|320657782|gb|EFX25552.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|323152702|gb|EFZ38974.1| transcriptional activator protein irlR [Escherichia coli EPECa14]
 gi|323158555|gb|EFZ44569.1| transcriptional activator protein irlR [Escherichia coli E128010]
 gi|323174649|gb|EFZ60269.1| transcriptional activator protein irlR [Escherichia coli LT-68]
 gi|323180780|gb|EFZ66320.1| transcriptional activator protein irlR [Escherichia coli 1180]
 gi|323183951|gb|EFZ69338.1| transcriptional activator protein irlR [Escherichia coli 1357]
 gi|327253104|gb|EGE64758.1| transcriptional activator protein irlR [Escherichia coli STEC_7v]
 gi|332095480|gb|EGJ00496.1| transcriptional activator protein irlR [Shigella dysenteriae
           155-74]
 gi|332096928|gb|EGJ01917.1| transcriptional activator protein irlR [Shigella boydii 3594-74]
 gi|332343693|gb|AEE57027.1| transcriptional activator protein IrlR [Escherichia coli UMNK88]
          Length = 223

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|77461417|ref|YP_350924.1| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf0-1]
 gi|77385420|gb|ABA76933.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 226

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  I     +G +    +        Q     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLIFALQGEGFTTTWLSLGAAALEHQRQTPADLIILDIGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP++ +S   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCKQLRRFSEVPVLFLSARNAEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                A +   R+  +      +G+   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 122 RPVIEASSALFRIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLDAL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             +A  E  ++SHI  +R KLR  +   +P+ + R LGYS
Sbjct: 181 AADAGYERSIDSHIKSVRAKLRLVRAEAEPIQTHRGLGYS 220


>gi|319938402|ref|ZP_08012797.1| signal transduction regulator [Coprobacillus sp. 29_1]
 gi|319806490|gb|EFW03154.1| signal transduction regulator [Coprobacillus sp. 29_1]
          Length = 228

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 98/220 (44%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++        +G  +  F++             D++  +  L       +
Sbjct: 5   IYVIEDDENIQEIVKLSLESNGYQVTLFDNAIDAIIAIHEDAPDLAIFDVMLPQ--MDGI 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + IR  ++Q+P++ +S   S    +   DSG DD + KP    E+ ARV  + RR++
Sbjct: 63  TAVKKIRETNTQMPILILSAKDSEIDKIHGLDSGSDDYMTKPFGVLELCARVRTLLRRVQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +T  + +       +   +   L  +E ++L YL+ N+ + V + ++ + I+G 
Sbjct: 123 PKSKSIQTPTLSIDKSTHIVQQNNQGIDLTHKEYQLLLYLIENKERVVERDELLNNIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E   ++ HI  LRKKL +  G   + + R +GY  
Sbjct: 182 YDFIGESRALDVHIRSLRKKLDDN-GEKYIKTVRSVGYRF 220


>gi|67906524|gb|AAY82630.1| predicted response regulator [uncultured bacterium MedeBAC49C08]
          Length = 229

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          +G S+E   + +    L      D+  ++  L       LE
Sbjct: 6   LLVEDEPDLNQTVAFNLDSEGYSVESAFNGKEALKLIEEKTPDLILLDLMLPD--MSGLE 63

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + RI+R        P++ ++        +  F+ G DD + KP   RE + RVAA+ +R 
Sbjct: 64  ICRILRSSKKTKNTPIMMVTAKGEEIDRIVGFELGADDYIVKPFSIREFMLRVAAMLKRS 123

Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    +   G + +       +++ +  PL  +E  +L YL+   G+   +  +  
Sbjct: 124 GDKINNDEEKIIFGSLEIDIAAHRVKLKDKEVPLTAKEFSLLHYLVERIGRVSTRDALLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G ++  V    V++H+ +LR KL +    + +++ R +GY  +
Sbjct: 184 DVWG-YNCEVTTRTVDTHVKRLRAKLSDVG--NNIETVRGVGYRFN 226


>gi|300785656|ref|YP_003765947.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|7339508|emb|CAB82844.1| putative response regulator [Amycolatopsis mediterranei]
 gi|14530100|emb|CAC42209.1| rA protein [Amycolatopsis mediterranei]
 gi|299795170|gb|ADJ45545.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 224

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  LV+ G     G  G  +    + E       SA  ++  ++  L   G    
Sbjct: 4   ILLIEDDPLVRRGLELALGRHGHDVRTAETGEDGLRQFRSAPPELVVLDLMLP--GIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA   VP+I ++        +    +G DD V KP     + AR+ A+ RR   
Sbjct: 62  EVCRGIRAAGPVPVIMLTARGDDFDVVGGLAAGADDYVVKPARPTVLDARIRAVLRRAAS 121

Query: 122 SNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S +       +R+ +       +GE   L   E R+L  L    G+ +++ Q+   ++  
Sbjct: 122 SPDGVRVHRDLRIDTTSLTVSSRGEPVSLTPTELRLLLTLSRAPGRVLSRQQLLEEVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            D   +  +V++ + +LR K+  +    + V + R  GY  
Sbjct: 181 HDYLGDSRLVDNCVQRLRAKIEADPAAPEYVQTVRGFGYRF 221


>gi|88856681|ref|ZP_01131337.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88814142|gb|EAR24008.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 266

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 100/229 (43%), Gaps = 16/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++++D   V +         G     +++GF +L+  E        D+  ++  L   G 
Sbjct: 43  LVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERF----HPDLIVLDRMLP--GI 96

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R IR+   VP+I ++   S    +   ++G DD ++KP   RE++ RV +I RR
Sbjct: 97  DGSEVCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRR 156

Query: 119 L---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G   + +        GE   L  RE  +L +L+ + G+  ++ Q+  
Sbjct: 157 SIGDLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLK 216

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSIDWN 223
           +++G   E  + + V   + +LR+K+        +  +   +GY ++++
Sbjct: 217 SVWGW--EFGDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRLNFS 263


>gi|15833161|ref|NP_311934.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. Sakai]
 gi|168747469|ref|ZP_02772491.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4113]
 gi|168753991|ref|ZP_02778998.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4401]
 gi|168760182|ref|ZP_02785189.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4501]
 gi|168767044|ref|ZP_02792051.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4486]
 gi|168773322|ref|ZP_02798329.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4196]
 gi|168781897|ref|ZP_02806904.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4076]
 gi|168785895|ref|ZP_02810902.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC869]
 gi|168797613|ref|ZP_02822620.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC508]
 gi|191167555|ref|ZP_03029367.1| transcriptional regulatory protein QseB [Escherichia coli B7A]
 gi|193062151|ref|ZP_03043247.1| transcriptional regulatory protein QseB [Escherichia coli E22]
 gi|193067451|ref|ZP_03048419.1| transcriptional regulatory protein QseB [Escherichia coli E110019]
 gi|194426360|ref|ZP_03058915.1| transcriptional regulatory protein QseB [Escherichia coli B171]
 gi|195937167|ref|ZP_03082549.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807848|ref|ZP_03250185.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4206]
 gi|208813501|ref|ZP_03254830.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4045]
 gi|208820089|ref|ZP_03260409.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4042]
 gi|209398732|ref|YP_002272499.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4115]
 gi|209920497|ref|YP_002294581.1| DNA-binding transcriptional regulator QseB [Escherichia coli SE11]
 gi|217327973|ref|ZP_03444056.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. TW14588]
 gi|218555595|ref|YP_002388508.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI1]
 gi|218696731|ref|YP_002404398.1| DNA-binding transcriptional regulator QseB [Escherichia coli 55989]
 gi|254794977|ref|YP_003079814.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. TW14359]
 gi|256019057|ref|ZP_05432922.1| DNA-binding transcriptional regulator QseB [Shigella sp. D9]
 gi|260845779|ref|YP_003223557.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O103:H2 str. 12009]
 gi|260857158|ref|YP_003231049.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O26:H11 str. 11368]
 gi|260869779|ref|YP_003236181.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O111:H- str. 11128]
 gi|261228037|ref|ZP_05942318.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254893|ref|ZP_05947426.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O157:H7 str. FRIK966]
 gi|291284403|ref|YP_003501221.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O55:H7 str. CB9615]
 gi|300818789|ref|ZP_07098995.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821609|ref|ZP_07101755.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300923683|ref|ZP_07139710.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|307310347|ref|ZP_07589995.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309793589|ref|ZP_07688015.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331654630|ref|ZP_08355630.1| transcriptional regulatory protein QseB [Escherichia coli M718]
 gi|331669956|ref|ZP_08370801.1| transcriptional regulatory protein QseB [Escherichia coli TA271]
 gi|331679095|ref|ZP_08379767.1| transcriptional regulatory protein QseB [Escherichia coli H591]
 gi|332280158|ref|ZP_08392571.1| transcriptional regulatory protein qseB [Shigella sp. D9]
 gi|21759373|sp|Q8XBS3|QSEB_ECO57 RecName: Full=Transcriptional regulatory protein qseB
 gi|13363379|dbj|BAB37330.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|187771006|gb|EDU34850.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4196]
 gi|188017926|gb|EDU56048.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4113]
 gi|189000655|gb|EDU69641.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4076]
 gi|189358454|gb|EDU76873.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4401]
 gi|189363668|gb|EDU82087.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4486]
 gi|189369277|gb|EDU87693.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4501]
 gi|189374171|gb|EDU92587.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC869]
 gi|189379675|gb|EDU98091.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC508]
 gi|190902412|gb|EDV62149.1| transcriptional regulatory protein QseB [Escherichia coli B7A]
 gi|192932371|gb|EDV84969.1| transcriptional regulatory protein QseB [Escherichia coli E22]
 gi|192959408|gb|EDV89843.1| transcriptional regulatory protein QseB [Escherichia coli E110019]
 gi|194415668|gb|EDX31935.1| transcriptional regulatory protein QseB [Escherichia coli B171]
 gi|208727649|gb|EDZ77250.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4206]
 gi|208734778|gb|EDZ83465.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4045]
 gi|208740212|gb|EDZ87894.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4042]
 gi|209160132|gb|ACI37565.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4115]
 gi|209759568|gb|ACI78096.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759570|gb|ACI78097.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759572|gb|ACI78098.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759574|gb|ACI78099.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759576|gb|ACI78100.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209913756|dbj|BAG78830.1| two-component response regulator [Escherichia coli SE11]
 gi|217320340|gb|EEC28765.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. TW14588]
 gi|218353463|emb|CAU99558.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli 55989]
 gi|218362363|emb|CAQ99987.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli IAI1]
 gi|254594377|gb|ACT73738.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O157:H7 str. TW14359]
 gi|257755807|dbj|BAI27309.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O26:H11 str. 11368]
 gi|257760926|dbj|BAI32423.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O103:H2 str. 12009]
 gi|257766135|dbj|BAI37630.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O111:H- str. 11128]
 gi|290764276|gb|ADD58237.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O55:H7 str. CB9615]
 gi|300420050|gb|EFK03361.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300525747|gb|EFK46816.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300528574|gb|EFK49636.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|306909242|gb|EFN39737.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|308122546|gb|EFO59808.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|315062336|gb|ADT76663.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli W]
 gi|320189376|gb|EFW64035.1| Two-component system response regulator QseB [Escherichia coli
           O157:H7 str. EC1212]
 gi|320201937|gb|EFW76512.1| Two-component system response regulator QseB [Escherichia coli
           EC4100B]
 gi|320640099|gb|EFX09671.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. G5101]
 gi|320645396|gb|EFX14405.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H- str. 493-89]
 gi|320650708|gb|EFX19165.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H- str. H 2687]
 gi|320656403|gb|EFX24310.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661775|gb|EFX29183.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666927|gb|EFX33903.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154721|gb|EFZ40920.1| transcriptional regulatory protein qseB [Escherichia coli EPECa14]
 gi|323163077|gb|EFZ48910.1| transcriptional regulatory protein qseB [Escherichia coli E128010]
 gi|323173733|gb|EFZ59362.1| transcriptional regulatory protein qseB [Escherichia coli LT-68]
 gi|323178730|gb|EFZ64306.1| transcriptional regulatory protein qseB [Escherichia coli 1180]
 gi|323377078|gb|ADX49346.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323946732|gb|EGB42752.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|324018133|gb|EGB87352.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324119636|gb|EGC13517.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|326337729|gb|EGD61563.1| Two-component system response regulator QseB [Escherichia coli
           O157:H7 str. 1125]
 gi|326347293|gb|EGD71018.1| Two-component system response regulator QseB [Escherichia coli
           O157:H7 str. 1044]
 gi|331048012|gb|EGI20089.1| transcriptional regulatory protein QseB [Escherichia coli M718]
 gi|331062869|gb|EGI34783.1| transcriptional regulatory protein QseB [Escherichia coli TA271]
 gi|331073160|gb|EGI44483.1| transcriptional regulatory protein QseB [Escherichia coli H591]
 gi|332102510|gb|EGJ05856.1| transcriptional regulatory protein qseB [Shigella sp. D9]
          Length = 219

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|320532177|ref|ZP_08033046.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135603|gb|EFW27682.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 238

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 10/222 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD  ++           G+S +          L  +   DV  ++  L   G   +E+ R
Sbjct: 16  DDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGLP--GMDGVEVCR 73

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            +R  S   ++ ++        L     G DD + KP   RE++AR+  + RR +  +  
Sbjct: 74  QLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAGSTG 133

Query: 126 A------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           A        G + +    R  E+      L R E  +L+ L  + G  + + Q+  A++G
Sbjct: 134 ATAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDAVWG 193

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             D   ++++V+ HI+ LRKKL  +      V + R +GY +
Sbjct: 194 E-DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234


>gi|297157290|gb|ADI07002.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 246

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D   A    +G  ++             + + D+  ++  L   G   L
Sbjct: 22  ILVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAQAWQPDLLVLDVMLP--GFDGL 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ 
Sbjct: 80  EVCRRVQATRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 139

Query: 122 S--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +        +     G + +    R   V+G    L   E  +L  L       +++ Q+
Sbjct: 140 AALAAHTPRSGILRLGELEIDHAQRRVRVRGVDVHLTPTEFDLLVCLANTPRAVLSREQL 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 LAEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242


>gi|167590482|ref|ZP_02382870.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 277

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   +S +  E L+   + +  A+   L+  G   L
Sbjct: 44  ILIVEDDADIADVLSLHLRDERYEV--VHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 101

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  R   +  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 102 EICRRARGMQRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 161

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V     +   + V    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 162 ALARDSRVDAGTLDVAGLSVDPIAREASVDGVRIDLTPREFDLLYFFARHPGKVFSRMDL 221

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 222 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 268


>gi|71842271|ref|YP_277359.1| Ycf27 [Emiliania huxleyi]
 gi|60101514|gb|AAX13858.1| ompR [Emiliania huxleyi]
          Length = 239

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++          G ++   +  E    L    + ++  ++  L        
Sbjct: 10  ILVVDDESNIRKILETRLTIRGYNVISASDGEEAIRLFHQEQPNLVILDIMLP--KLDGY 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  S VP+I ++    +   +   + G DD V KP + +E+ ARV ++ RR + 
Sbjct: 68  TVCSELRKKSNVPIIMLTARGDISDRVMGLEFGADDYVIKPFYPKELEARVRSLLRRSEK 127

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           ++N +      + G + + +  +          L   E  +LE L+ N G+R+++  I  
Sbjct: 128 TSNYSSNKYLFQIGNLTINTQKQQVFRDNARVRLTGIEFSLLELLITNAGERLSRAYILD 187

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G   +  ++  VV+ HIS+LR KL  +    D + + R  GY  
Sbjct: 188 TVWGYTPERYLDTRVVDVHISRLRSKLEIDPGKPDLILTARGTGYMF 234


>gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1175

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L     +A       ++E  +  +    L  +   D+  ++  L       +
Sbjct: 3   ILVVEDDELTAQALVATLASQNYTVETASDGQEGWELTEAFAYDLILLDVTLP--KLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R+   Q+P++ ++   +        D+G DD V KP    E+ AR+ A+ RR +
Sbjct: 61  TLCQRLRSQGHQMPILLLTARNTSHDKALGLDAGADDYVVKPFEPEELAARIRALLRRNQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +  E G +       +   + +   L  +E  +LE  + N  +  +   I   ++ 
Sbjct: 121 LTSQSVLEWGDLVFDPISCEVTYKTKPLSLTAKEYALLELFLRNSRRVFSCGAILENLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            F+E   +  V +HI  LR+KL+      D +++   +GY +
Sbjct: 180 SFEEVPSDEAVRTHIKGLRQKLKAAGAPTDMIETVYGIGYRL 221



 Score = 77.3 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   +     +L    G+ +           L  +   D+  ++  +        EL
Sbjct: 516 VVDDDPKMLAIVRSLLEPWGLKIIALADPRQFWELLETTSPDLLILDIEMPQ--ISGTEL 573

Query: 64  PRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +I+R   + S +P++ ++ +   ++    F  G DD V+KPI   E++ R+     R++
Sbjct: 574 CQIVRNDSSWSSLPILFLTAHSDAESINQVFSVGADDFVSKPIVGPELVTRIINRLERIR 633

Query: 121 V 121
            
Sbjct: 634 A 634



 Score = 39.1 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 1/95 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++D    +    IA     G  LE   +L            D+  +E  +     + 
Sbjct: 388 LLLIVDRDRSLAKKLIAEATTWGFDLEVATNLTIARNKIGLKSPDLVLLEPAIFPTAAES 447

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSG 94
           L L   ++ H   +P I  ++   L T L+    G
Sbjct: 448 LTLLAELKKHAPPIPAIIFTERDDLTTRLEVARLG 482


>gi|224476547|ref|YP_002634153.1| putative response regulator protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421154|emb|CAL27968.1| putative response regulator protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 220

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +   ++  N  +  E L+++  ++       L+      L
Sbjct: 4   ILIVEDEQNLARFIELELIHENYEVDIEN--DGAEGLKTALSKEYDLYLLDLMLPHMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I I+        +   D G DD + KP    E+LAR+ A  RR + 
Sbjct: 62  EICRKIREVKSTPIIIITAKGDTYDKVAGLDYGADDYIVKPFDIEELLARIRATLRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +      I +        + G+   L + E  +L+ L  N    + + QI + ++G +
Sbjct: 121 AKDTITIKGIEIDKAAFRVTIDGQELELTKTEYDLLQLLTENLNHVMQREQILNHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 DSEVETNVVDVYIRYLRNKLKPFNKEKVIETVRGVGYVI 218


>gi|189010643|ref|ZP_02808375.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4076]
 gi|189403619|ref|ZP_02796631.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404363|ref|ZP_02788923.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4501]
 gi|208810230|ref|ZP_03252106.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816557|ref|ZP_03257677.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819204|ref|ZP_03259524.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398847|ref|YP_002271082.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328961|ref|ZP_03445042.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           TW14588]
 gi|188999283|gb|EDU68269.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359672|gb|EDU78091.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366025|gb|EDU84441.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4501]
 gi|208724746|gb|EDZ74453.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730900|gb|EDZ79589.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739327|gb|EDZ87009.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160247|gb|ACI37680.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4115]
 gi|217318308|gb|EEC26735.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           TW14588]
 gi|326342377|gb|EGD66158.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. 1044]
          Length = 233

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 13  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 71  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 130

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 131 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 189

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 190 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 228


>gi|153940678|ref|YP_001390399.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936574|gb|ABS42072.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318486|gb|ADF98863.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 233

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +   +      E    L       +  ++  L        
Sbjct: 7   ILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLP--KLSGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   IR  S VP+I ++     +  L+    G DD + KP   RE++ARV A+ RR   
Sbjct: 65  EVCSKIRESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G + V          G+   L   E ++L  L+ N G+   + Q+  
Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +G +D       V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|107027025|ref|YP_624536.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116691778|ref|YP_837311.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|105896399|gb|ABF79563.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116649778|gb|ABK10418.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
          Length = 228

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 4   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLP--GQDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ +I RR + 
Sbjct: 62  TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 122 RDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 182 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 221


>gi|170759704|ref|YP_001785583.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
 gi|169406693|gb|ACA55104.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
          Length = 228

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   ++D        +G S E   +    E   Q   + D+  ++  L       
Sbjct: 4   ILIIEDDEDIRDILKLYL--EGQSYEILEAENGAEATKQLVKQPDLVILDLMLPD--IDG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR     P+I I+   + Q  +     G DD + KP +  E++ARV A  RR K
Sbjct: 60  LSICKSIRKKYYYPIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYK 119

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +             + +    +   +  +   L   E +ILE L+  +G+ ++  ++F
Sbjct: 120 QYDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEVLLKKKGEVLSGEELF 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + I+     +   N +  H+  LR+K+ +     + + +   +GY I+
Sbjct: 180 NLIWEDEYYSKSTNTITVHVRNLREKMGDSFEKPEYIKTVWGVGYIIE 227


>gi|15595660|ref|NP_249154.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PAO1]
 gi|254243559|ref|ZP_04936881.1| two-component response regulator CreB [Pseudomonas aeruginosa 2192]
 gi|9946324|gb|AAG03852.1|AE004484_4 two-component response regulator CreB [Pseudomonas aeruginosa PAO1]
 gi|126196937|gb|EAZ61000.1| two-component response regulator CreB [Pseudomonas aeruginosa 2192]
          Length = 229

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G +            LQ     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALQAEGFATTWVTLAGEALALQERQPADLLILDVGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                E    +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+
Sbjct: 122 RPAALEEAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            G+  EA  E  ++SHI  LR KLR      + + + R LGYS
Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNERGEAIQTHRGLGYS 223


>gi|315646972|ref|ZP_07900086.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277624|gb|EFU40949.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 224

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++       +DG +       +    +  S   D+  ++  +        
Sbjct: 4   ILVADDDPNIRELVCLFLRNDGFTTVEARDGKEALAVYGSTPVDLVVLDIMMPI--MDGW 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 62  TLCKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 121

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S      G I +           E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 122 IGSTQTVHFGNIILDRQTYKVTRGTESLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 182 I-DYAGDDRTVDVHIKRLRERFAETPDF-RIETVRGLGYRLEV 222


>gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
 gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
          Length = 230

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G ++    + E           D+  ++  +       L
Sbjct: 5   ILLVEDDEAIREMVDNYLTMEGFNVTTATNGEEALHNCLQNTFDLVILDIMIP--KLNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ +IIR  + +P+I +S   S          G DD + KP    E  ARV A+ RR   
Sbjct: 63  EVLKIIREQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +      E   +++          G+   L  +E  IL+  + NR +   K QI+
Sbjct: 123 YSSQAEQKQEVLEIDNLKIDIVNFSIAKSGQEIKLTSKEFSILKLFVTNRQRVFTKEQIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+       +EN++  HI +LR+K+ +       + +   +GY  +
Sbjct: 183 QMIW-KDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGYKFE 229


>gi|223984503|ref|ZP_03634635.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
           12042]
 gi|223963489|gb|EEF67869.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
           12042]
          Length = 224

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G +++   + +  E +  + +E+   I   ++       
Sbjct: 4   ILVVDDEQRIREMIRKYAEYEGFAVD--EACDGLEAVDKAMKENYDLIVMDIMMPNLDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IR  H  VP+I +S        +  FD GVDD V KP   +E++ R+ AI +R  
Sbjct: 62  SACREIRKTHENVPVILLSALGEEYDKIHGFDLGVDDYVVKPFSPKELMMRIHAILKRTS 121

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S  +   +   + +   GR  +++ E   L  +E  +L YL+ NRG  + + ++   ++
Sbjct: 122 QSEKKELIKINDLTIDFTGRIVKIKDEKLNLSPKEYDLLFYLVKNRGIALTREKLLQNVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +E  +++HI  LRK LR       + + R +GY  +
Sbjct: 182 G-YDFFGDERTLDTHIKLLRKNLREY--SRYITTLRGVGYRFE 221


>gi|182416533|ref|ZP_02947960.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237668894|ref|ZP_04528878.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379605|gb|EDT77087.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657242|gb|EEP54798.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 234

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 97/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + DG      + G ++  F +    E L+   +E +      ++      +
Sbjct: 6   ILIVEDEKEICDGIEIYLKNQGYTV--FKAYNGIEGLEIIEKEKIHLAIVDIMMPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +R     P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 64  TMVMKLREQHDFPVIMLSAKSEEMDKIMGLNIGADDYVTKPFNPMELIARVNSQLRRYAK 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +   N    G I + +D ++  V G++  +  +E  IL  LM N G+  +  
Sbjct: 124 YLKVLKNNEKKTNLFVVGGIELNTDTKEVTVDGDIVKMTPKEFNILHLLMKNPGRVFSAE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +I+  ++   ++A+    +  H+  +R+K+  +      +     +GY I+
Sbjct: 184 EIYERVWK--EDAISTETIMVHVRNIREKIEIDSKNPKYLKVVWGVGYKIE 232


>gi|291618073|ref|YP_003520815.1| BaeR [Pantoea ananatis LMG 20103]
 gi|291153103|gb|ADD77687.1| BaeR [Pantoea ananatis LMG 20103]
 gi|327394471|dbj|BAK11893.1| transcriptional regulatory protein BaeR [Pantoea ananatis AJ13355]
          Length = 235

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 5/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +    I                       +    D+  ++  L   G+  
Sbjct: 9   LILVVEDEPKLAQLMIDYLQASNYRTHHLAHGNEVLDYVNQTPPDLILLDLMLP--GKDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR  S++P+I ++        L   + G DD V KP   RE++ARV  I RR+K
Sbjct: 67  LTLCREIRRDSELPIIMVTARTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRRVK 126

Query: 121 VSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S   A     ++V         + E   L   E R+L+ L    GK  ++ Q+ + +Y 
Sbjct: 127 RSPEDAPVASLLKVHESRFQASWRDEPLDLTPAEFRLLKTLSLEPGKVFSREQLLNHLYD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
            +   V +  ++SHI  LR+KL N     P + +   +GY  + +
Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLENLDSEQPFIRAVYGMGYRWEAD 230


>gi|39996204|ref|NP_952155.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39982969|gb|AAR34428.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298505216|gb|ADI83939.1| winged-helix phosphate transcriptional response regulator
           [Geobacter sulfurreducens KN400]
          Length = 225

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 104/230 (45%), Gaps = 19/230 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   + D        +G     +L+G N LE    L  S   D+  ++  L   G
Sbjct: 4   ILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLE----LARSQPPDLILLDLMLP--G 57

Query: 58  EKVLELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              +E+ +I++     + +P+I ++        +  F+ G DD V KP   RE+L RV A
Sbjct: 58  MMGMEVCKILKKSEKTAHIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRVKA 117

Query: 115 IYRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + RR    K        GP+ + ++     V+G+   L   E ++L  L    G+  ++ 
Sbjct: 118 VLRRSLPDKPEGKVINVGPVTIDTERHMVAVEGDDVTLTTTEFKLLLNLAERLGRVQSRD 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   ++G ++   +   V++HI++LR KL      + + + R  GY ++
Sbjct: 178 LLLKNVWG-YNYVGDTRTVDTHITRLRTKLGQAG--ELIKTVRGFGYKME 224


>gi|239816532|ref|YP_002945442.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus S110]
 gi|239803109|gb|ACS20176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus S110]
          Length = 225

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       ++G  ++         +L +     +  ++  L   G    
Sbjct: 3   ILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGDYALILLDVMLP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S VP++ ++    ++  ++    G DD + KP    E+LAR+ A+ RR K 
Sbjct: 61  AVLQAIRRTSNVPVLVLTARDKVEDRVNGLQQGADDYLVKPFSFSELLARIQALLRRGKP 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       + +    R          L  +E  +L  L+  RG+ ++++ +   ++ +
Sbjct: 121 QESTVLRLADLELDLASRKCFRNRTRLDLTAKEFTLLVVLLRRRGQILSRSTLAEQVWEM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRSKIDDPFEVKLLHTVRGMGYVLE 220


>gi|187777143|ref|ZP_02993616.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
 gi|187774071|gb|EDU37873.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
          Length = 227

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +K+        +G  ++  ++ E    L      D+  ++  +       +
Sbjct: 5   ILVVDDDITIKNLIEVYLKSEGYDVDNASNGEEALNLIGDYNYDLVILDIMMP--KLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
                IR    +P+I +S        +     G DD ++KP    E+LARV A  RR K 
Sbjct: 63  LTCIKIREKFTMPIIFLSAKGEELDKIQGLTVGADDYISKPFGSMELLARVKAQLRRYKK 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +S N  E   + +  D  +  V+GE   L  +E  ILE L  N+G   +  +++ 
Sbjct: 123 FNSITISKNIIEIEDLVINVDTHEVNVRGENIKLTSKEFNILECLARNKGIVFSVEKLYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++       + +VV  HI+ +R+K+  +      + +   +GY I
Sbjct: 183 TVWKEKFVVSDTSVV-VHITNIRQKIEIDPKAPQYIKTVWGVGYKI 227


>gi|161522391|ref|YP_001585320.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221198526|ref|ZP_03571571.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2M]
 gi|221207755|ref|ZP_03580762.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2]
 gi|160345944|gb|ABX19028.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|221172252|gb|EEE04692.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2]
 gi|221180977|gb|EEE13379.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2M]
          Length = 272

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   +S +  + L+   +    A+   L+  G   L
Sbjct: 40  ILIVEDDADIADVLSLHLRDERYEV--VHSADGAQGLRLLEQGGWDALILDLMLPGVDGL 97

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 98  EICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 157

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 158 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 217

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 218 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 264


>gi|71906069|ref|YP_283656.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71845690|gb|AAZ45186.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 223

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 106/221 (47%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A++ DG        G +++   +    +    +   D+  ++  L       L
Sbjct: 3   ILIAEDDAIIADGLSRSLRQGGYAVDWAPNGMEADTALVTVSYDLLILDLGLP--KLSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA  SQ+P++ ++        +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLKRLRARNSQLPVLILTALDGTGDRVKGLDLGADDYMVKPFELPELEARVRALTRRSA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++   + G +     GR  ++QG+   L  RE  +LE L++  G+ V+K Q+   + G 
Sbjct: 121 GTSPTIQCGALTYDQVGRVAQIQGQTLELSAREVGLLEVLLSRMGRLVSKDQLVDHLCG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E V  N +E ++ +LRKK+    G   + + R LGY ++
Sbjct: 180 WGEEVSHNAIEVYVHRLRKKIE--PGGVKIATVRGLGYCLE 218


>gi|326692153|ref|ZP_08229158.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 99/230 (43%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   E   + + +E L       D++ +   ++      
Sbjct: 3   ILVVDDDIEIAELLEIYLKNEGY--EPIMATDGKEALSKLNTNPDIALMILDVMMPNMNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + +R  S++P++ +S        +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  LEVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAE 120

Query: 121 -----VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 + +  + G + +  D  +     G++  L   E  IL  L ++  +  +   IF
Sbjct: 121 NAVQDQTPDVLDIGSLIINKDSHEVKTSDGDLVNLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++   +  V    V  H+S LR K+     G   + +   +GY I+ N
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229


>gi|293607199|ref|ZP_06689540.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
           43553]
 gi|292814291|gb|EFF73431.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
           43553]
          Length = 219

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++     E   +L      D   ++  L       L
Sbjct: 3   ILVVEDEPTLAAQLADALRGAGYTVDVAGDGESARFLGDVETFDAVVLDLGLPV--MDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + ++ RA    +P++ ++   +    +   D+G DD + KP H  E+LARV A+ RR  
Sbjct: 61  TVLKLWRAAQRNMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRST 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ +   GP+ + +      + G+   L   E ++L  LM   G+ V++T++   +Y 
Sbjct: 121 AHASAQWRCGPLMLDTRQARVTIDGQALSLTSHEFKVLSVLMQRAGEVVSRTELIDHVYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N ++  I++LRKKL        +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIDVFIARLRKKL----PPGTIETVRGLGYRL 216


>gi|255319403|ref|ZP_05360619.1| transcriptional regulator protein [Acinetobacter radioresistens
           SK82]
 gi|262380867|ref|ZP_06074018.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255303539|gb|EET82740.1| transcriptional regulator protein [Acinetobacter radioresistens
           SK82]
 gi|262297502|gb|EEY85420.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 228

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   +           G  +  F+  +         +  +  ++  +       L +
Sbjct: 6   LVEDEVELAGLVRDYLEAGGFEVSVFHDGQEAYDHFLQRKPSLMILDLMVPR--MDGLTI 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R  S +P+I ++        +   + G DD + KP   +E++ARV A+ RRL    
Sbjct: 64  CRKVREQSDIPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLDRKA 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              +    R+    +    Q +   L   E R+LE  + + G+  ++ Q+   I      
Sbjct: 124 EPEQNSLFRIDKAQQRIWYQQKSLNLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDSF 182

Query: 184 AVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
            V + V++SHI  LR+K+ +        + + +   +GY  ++
Sbjct: 183 DVADRVIDSHIKNLRRKITDAANTGNRHEWIQAVYGVGYRFEY 225


>gi|238061758|ref|ZP_04606467.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237883569|gb|EEP72397.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 231

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 10/223 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        DG  +                R     ++  L   G   
Sbjct: 10  LVLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALP--GLAG 67

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ R +R      P++ ++        +   + G DD V KP   RE++ARV A+ RR 
Sbjct: 68  TEICRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRT 127

Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  E     GP+ +    R   V GE   L   E  +L +LMA  G+   + ++ +
Sbjct: 128 VGVPEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELLA 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           A++G +        V+ H++++R KL    G   + + R +GY
Sbjct: 188 AVWG-YAAHSSTRTVDVHVAQVRAKLGGAAG--VIRTHRGVGY 227


>gi|226310528|ref|YP_002770422.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093476|dbj|BAH41918.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 238

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G   ++   +      L      D+  ++  L  K    
Sbjct: 7   ILLVDDEEAILQMLQTVLKKEGFVQIDTCTTAAEAIRLVEEKTYDLLILDVMLPDK--SG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            EL   +R  ++ P+  ++   +    L  F  G DD + KP H  E++AR+ A  RR  
Sbjct: 65  FELCGAVRQRTKAPIFFLTAKGTDFDKLSGFAYGADDYITKPFHPLEVVARMKAHLRRTL 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                     R + G  +V  +  +  V GE    P +   +L +      +   K QI+
Sbjct: 125 GGSAPSQEEKRYDFGRFQVNVEAAELFVNGERVDCPAQVFSLLVFFCQYPNRVFTKEQIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++       +EN V  HI KLR+++    G    + + R LGY +
Sbjct: 185 DHVWKDEYGMFDENTVMVHIHKLRQRIEENPGQPKLLVTVRGLGYKL 231


>gi|223934839|ref|ZP_03626758.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223896292|gb|EEF62734.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 236

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +    +      G +++     E      ++ + D + ++  L       L
Sbjct: 17  ILVVEDDAKIASFVVNGLKQSGFAVDRCADGEEGHTFAATTKYDAAVVDVMLP--KLDGL 74

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R    ++P+I +S   S+   +    +G DD + KP    E+ AR+ A+ RR  
Sbjct: 75  SLVQRLRKEGIRIPVIFLSAKASVDDRVKGLQAGGDDYLTKPFAFSELHARIQALIRRAS 134

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R   G + +    R+    GE   L  RE  +LEYLM N G+ V KT I   I+
Sbjct: 135 NATEPTRLTVGDLGLDLLTREVTRGGEKIELQSREFALLEYLMRNTGRAVTKTMILEHIW 194

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NVV+  + +LR K+        + + R +GY +
Sbjct: 195 D-YSFDPQTNVVDVLVFRLRNKIDKD--KKMLHTIRGVGYVL 233


>gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 226

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFENKLIMTVRGMGYRL 218


>gi|169824302|ref|YP_001691913.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302380572|ref|ZP_07269037.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna ACS-171-V-Col3]
 gi|303234059|ref|ZP_07320708.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna BVS033A4]
 gi|167831107|dbj|BAG08023.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302311515|gb|EFK93531.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna ACS-171-V-Col3]
 gi|302494984|gb|EFL54741.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna BVS033A4]
          Length = 229

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++         +G  +   +S E    L    + DV+ ++  L   G    E
Sbjct: 6   LLVEDEDNIRQFTKINLAREGFEILEADSGEKGVELAELNKPDVAVLDIMLP--GIDGFE 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + +I+R     + +I ++        ++  + G DD + KP + RE++ R+ ++ RR   
Sbjct: 64  VCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSPQ 123

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++   E    ++    R     G+   L   E  I++ LM N GK + + ++    +
Sbjct: 124 KQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELSIIKLLMQNPGKAITRDELMDKAW 183

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G  D   +  +V+ ++ +LR K+  +      + +   +GY  +
Sbjct: 184 GE-DFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGYRWE 226


>gi|82778365|ref|YP_404714.1| DNA-binding transcriptional regulator QseB [Shigella dysenteriae
           Sd197]
 gi|309785329|ref|ZP_07679960.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617]
 gi|81242513|gb|ABB63223.1| putative 2-component transcriptional regulator [Shigella
           dysenteriae Sd197]
 gi|308926449|gb|EFP71925.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617]
          Length = 219

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQTSNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX]
          Length = 232

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +++        +G       + +  E L +   + V  +   ++  G   L 
Sbjct: 8   LIADDDRAIRESLERALQLEGYQTR--TAADGVETLAAVHSDPVDLLILDVMMPGVDGLG 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++RA     P++ ++        +   D+G DD + KP    E+LAR+ A+ RR   
Sbjct: 66  VCRVLRAEGDRTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALLRRAAP 125

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          + G +R+    R     G    L + E  +LE L  N G  +  + I+ 
Sbjct: 126 TTGEGAAEPLIQVGDLRIDPGARRVWRAGREVELSKTEFDLLELLARNAGIVLDHSTIYD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   E   +  +IS LR+KL  +     + + R +GY++
Sbjct: 186 RIWG-YDFGPESKNLAVYISYLRRKLEPEGTTPLIQTVRGVGYTL 229


>gi|15925351|ref|NP_372885.1| two component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927941|ref|NP_375474.1| hypothetical protein SA2151 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21284011|ref|NP_647099.1| hypothetical protein MW2282 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487144|ref|YP_044365.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87161981|ref|YP_494943.1| response regulator protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88196283|ref|YP_501105.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148268798|ref|YP_001247741.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394868|ref|YP_001317543.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156980676|ref|YP_001442935.1| hypothetical protein SAHV_2345 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510555|ref|YP_001576214.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142609|ref|ZP_03567102.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253314701|ref|ZP_04837914.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255007137|ref|ZP_05145738.2| response regulator protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257794703|ref|ZP_05643682.1| response regulator receiver [Staphylococcus aureus A9781]
 gi|258407383|ref|ZP_05680526.1| two-component system response regulator receiver [Staphylococcus
           aureus A9763]
 gi|258422289|ref|ZP_05685201.1| response regulator protein [Staphylococcus aureus A9719]
 gi|258439681|ref|ZP_05690427.1| two component response regulator [Staphylococcus aureus A9299]
 gi|258442762|ref|ZP_05691322.1| heme response regulator hssR [Staphylococcus aureus A8115]
 gi|258446538|ref|ZP_05694693.1| two component response regulator [Staphylococcus aureus A6300]
 gi|258450345|ref|ZP_05698437.1| two component transcriptional regulator [Staphylococcus aureus
           A6224]
 gi|258451333|ref|ZP_05699366.1| response regulator receiver [Staphylococcus aureus A5948]
 gi|258455279|ref|ZP_05703239.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|262048779|ref|ZP_06021660.1| hypothetical protein SAD30_0626 [Staphylococcus aureus D30]
 gi|262051514|ref|ZP_06023735.1| hypothetical protein SA930_1282 [Staphylococcus aureus 930918-3]
 gi|269203993|ref|YP_003283262.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893807|ref|ZP_06302039.1| heme response regulator hssR [Staphylococcus aureus A8117]
 gi|282917713|ref|ZP_06325464.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920347|ref|ZP_06328070.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A9765]
 gi|282926915|ref|ZP_06334542.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A10102]
 gi|283767450|ref|ZP_06340365.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|284025384|ref|ZP_06379782.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|294848904|ref|ZP_06789649.1| two-component system [Staphylococcus aureus A9754]
 gi|295405048|ref|ZP_06814861.1| two-component system [Staphylococcus aureus A8819]
 gi|296275447|ref|ZP_06857954.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297244105|ref|ZP_06927995.1| two-component system [Staphylococcus aureus A8796]
 gi|81696274|sp|Q6G6V9|HSSR_STAAS RecName: Full=Heme response regulator hssR
 gi|81704182|sp|Q7A039|HSSR_STAAW RecName: Full=Heme response regulator hssR
 gi|81705166|sp|Q7A3X1|HSSR_STAAN RecName: Full=Heme response regulator hssR
 gi|81781023|sp|Q99RR6|HSSR_STAAM RecName: Full=Heme response regulator hssR
 gi|122538783|sp|Q2FVQ9|HSSR_STAA8 RecName: Full=Heme response regulator hssR
 gi|123484649|sp|Q2FED5|HSSR_STAA3 RecName: Full=Heme response regulator hssR
 gi|187609569|sp|A7X5Y5|HSSR_STAA1 RecName: Full=Heme response regulator hssR
 gi|187609570|sp|A6U488|HSSR_STAA2 RecName: Full=Heme response regulator hssR
 gi|187609571|sp|A5IVE2|HSSR_STAA9 RecName: Full=Heme response regulator hssR
 gi|187609573|sp|A8Z552|HSSR_STAAT RecName: Full=Heme response regulator hssR
 gi|13702312|dbj|BAB43453.1| SA2151 [Staphylococcus aureus subsp. aureus N315]
 gi|14248135|dbj|BAB58523.1| similar to two component response regulator [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21205454|dbj|BAB96147.1| MW2282 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245587|emb|CAG44065.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87127955|gb|ABD22469.1| response regulator protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203841|gb|ABD31651.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741867|gb|ABQ50165.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947320|gb|ABR53256.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722811|dbj|BAF79228.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369364|gb|ABX30335.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257788675|gb|EEV27015.1| response regulator receiver [Staphylococcus aureus A9781]
 gi|257840895|gb|EEV65346.1| two-component system response regulator receiver [Staphylococcus
           aureus A9763]
 gi|257841720|gb|EEV66157.1| response regulator protein [Staphylococcus aureus A9719]
 gi|257847457|gb|EEV71459.1| two component response regulator [Staphylococcus aureus A9299]
 gi|257851883|gb|EEV75817.1| heme response regulator hssR [Staphylococcus aureus A8115]
 gi|257854606|gb|EEV77554.1| two component response regulator [Staphylococcus aureus A6300]
 gi|257856437|gb|EEV79346.1| two component transcriptional regulator [Staphylococcus aureus
           A6224]
 gi|257861125|gb|EEV83940.1| response regulator receiver [Staphylococcus aureus A5948]
 gi|257862490|gb|EEV85258.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|259160498|gb|EEW45521.1| hypothetical protein SA930_1282 [Staphylococcus aureus 930918-3]
 gi|259163037|gb|EEW47598.1| hypothetical protein SAD30_0626 [Staphylococcus aureus D30]
 gi|262076283|gb|ACY12256.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269941947|emb|CBI50358.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282318468|gb|EFB48827.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus D139]
 gi|282591366|gb|EFB96439.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A10102]
 gi|282594293|gb|EFB99279.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A9765]
 gi|282763865|gb|EFC03993.1| heme response regulator hssR [Staphylococcus aureus A8117]
 gi|283461329|gb|EFC08413.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|285818024|gb|ADC38511.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus 04-02981]
 gi|294824283|gb|EFG40707.1| two-component system [Staphylococcus aureus A9754]
 gi|294969993|gb|EFG46011.1| two-component system [Staphylococcus aureus A8819]
 gi|297178883|gb|EFH38128.1| two-component system [Staphylococcus aureus A8796]
 gi|302752233|gb|ADL66410.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|312830708|emb|CBX35550.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128716|gb|EFT84717.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315197445|gb|EFU27782.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|329315049|gb|AEB89462.1| Heme response regulator hssR [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329723627|gb|EGG60156.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           21172]
 gi|329726694|gb|EGG63155.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           21189]
 gi|329730100|gb|EGG66490.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           21193]
          Length = 224

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++  +   G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMM--DGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN+    G + +     + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|332186744|ref|ZP_08388486.1| response regulator [Sphingomonas sp. S17]
 gi|332013077|gb|EGI55140.1| response regulator [Sphingomonas sp. S17]
          Length = 230

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A           + G ++E         +L S    D+   +  L       L
Sbjct: 5   ILIVEDDASTAAYVAKGLAEAGYAVEQCGDGRDGLFLASEGIFDLIIADRMLPR--LDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   IRA     P++ +S   ++   +D   +G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  AMVSAIRAAGISTPVLILSALATVDDRVDGLKAGADDYLCKPFSFAELSARIEALVRRSD 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +  +   G + +    R     G++ P+  RE  +LE+L  + G+ V +T +  
Sbjct: 123 RAASEPTRTKLSVGDLEIDLLARTVTRAGKLIPVGAREFNLLEFLARHAGQVVTRTMMLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+  +      NVV+ HI +LR+KL    G   + + R  GY +
Sbjct: 183 KIWN-YHFDPGSNVVDVHIGRLRRKLEEGFGTPILHTVRGAGYRL 226


>gi|296156101|ref|ZP_06838940.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295893607|gb|EFG73386.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 225

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G +++  N       L      DV  ++  L   G    
Sbjct: 3   ILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLP--GMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R     P++ ++    +   +   + G DD + KP    E+LARV  + RR   
Sbjct: 61  GVVKTLRTTRTTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   + G + +  + R  +  G    L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRTKIDDNFPVKLIHTVRGVGYVLE 220


>gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
 gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
          Length = 242

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V  N+     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQNAIQVMENKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWNERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|218695574|ref|YP_002403241.1| transcriptional regulatory protein YedW [Escherichia coli 55989]
 gi|218352306|emb|CAU98068.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli 55989]
 gi|315617851|gb|EFU98449.1| transcriptional activator protein irlR [Escherichia coli 3431]
          Length = 223

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHT 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|269138423|ref|YP_003295123.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|267984083|gb|ACY83912.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|304558449|gb|ADM41113.1| Response regulator BaeR [Edwardsiella tarda FL6-60]
          Length = 243

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    I      G      +  +           D+  ++  L   G   L 
Sbjct: 19  LIVEDEPKLGQLLIDYLIAAGYRPHWLSRGDEVLPYLQEHLCDLILLDLMLP--GVDGLT 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR  + 
Sbjct: 77  LCREIRRTSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCGLQ 136

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +  +E  P+ +         + +   L + E R+L+ L    G  +++ Q+ + +Y  + 
Sbjct: 137 DTLSEPAPLLIDESRFQASYRQQPLDLTQAEFRLLKTLATQPGSVLSREQLLNHLYDDY- 195

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             V +  V+SHI  LR+KL    G +P + S   +GY  +
Sbjct: 196 RVVTDRTVDSHIKNLRRKLEPVEGDEPLIRSVYGVGYRWE 235


>gi|170078061|ref|YP_001734699.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885730|gb|ACA99443.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 222

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F  +G ++   ++   +E L  + +   + +   L       L
Sbjct: 4   ILIIEDEPRIASFLEKGFKSEGFTVTIAST--AKEALDWALQYPFALLILDLGLPDADGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           E+   +R      P+I ++    L   +   + G DD + KP   +E+LARV A  R   
Sbjct: 62  EVLHDLRGQGVTAPIIILTARDDLDDKVTGLNLGADDYLGKPFSFKELLARVQARLRTFT 121

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R        +T  + +    R          LP RE  +LE L+ +  + +++ Q+   
Sbjct: 122 PRATPEPMCLKTQTLELDLKARRVRQGDVWLELPTREFILLETLLRHPDQVLSRQQLLDQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ +I  LRKKL    G D +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYIGYLRKKL----GSDLIETVRGIGYRL 220


>gi|170736223|ref|YP_001777483.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|206562574|ref|YP_002233337.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|169818411|gb|ACA92993.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
 gi|198038614|emb|CAR54574.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 227

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLP--GQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ +I RR + 
Sbjct: 61  TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|28199836|ref|NP_780150.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71275218|ref|ZP_00651505.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71899561|ref|ZP_00681717.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|170731213|ref|YP_001776646.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182682586|ref|YP_001830746.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|28057957|gb|AAO29799.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71164027|gb|EAO13742.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71730690|gb|EAO32765.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|167966006|gb|ACA13016.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182632696|gb|ACB93472.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307578868|gb|ADN62837.1| two component transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 231

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D                +     + + +    D+  ++  L   G   LE
Sbjct: 6   LIVDDEVAIRDMVAFALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLP--GTSGLE 63

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R  R  S   ++P+I ++        +   ++GVDD + KP   RE+LAR+ A+ RR 
Sbjct: 64  LTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRRT 123

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +     G +R+              P+   E R+L + M +  +  ++TQ+   +
Sbjct: 124 RDDEEDGSVAIGKLRIDGAAHRVYAGHVQVPIGPTEYRLLHFFMTHSERVYSRTQLLDHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  ++ HI +LR+ L      D V + R  GY  
Sbjct: 184 WGSG-VYIEERTIDVHIRRLRRTLEPFGLDDMVQTVRSAGYRF 225


>gi|126651421|ref|ZP_01723625.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591674|gb|EAZ85770.1| two-component response regulator [Bacillus sp. B14905]
          Length = 233

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   + D         G      +S++           D+  ++  +        
Sbjct: 4   ILCIDDEPRMLDLLTLYLEP-GFQCRAMSSIQDALIYLEEEHVDLVLLDIMMPE--MDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IR    VP+I ++        +   + G DD + KP    E+LAR+ A+ RR K+
Sbjct: 61  QVCEEIRKFWHVPIIMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVLRRTKI 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       +R+  +  +   Q E  PL  +E  ++   +  + K  ++  + + ++G +
Sbjct: 121 EDKVVVFEGLRLDKESFELYYQQEAIPLTPKEFSMMSLFLDYQNKVFSREHLINTVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
             ++E+  ++SH+  LR+KLR       D + +   +GY 
Sbjct: 180 HVSIEDRTIDSHVRNLREKLRKSGFPADDYLQTVWGIGYK 219


>gi|33598499|ref|NP_886142.1| phosphate regulon transcriptional regulatory protein [Bordetella
           parapertussis 12822]
 gi|33574628|emb|CAE39279.1| phosphate regulon transcriptional regulatory protein [Bordetella
           parapertussis]
          Length = 213

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 91/203 (44%), Gaps = 8/203 (3%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR---AHSQVPLIGIS 79
           G  +      E  + L  +   D+  ++  L   G   L L R +R       VP+I ++
Sbjct: 7   GHKVLRAFDAEQAQTLIRAELPDLILLDWMLP--GASGLSLARKLRDEERTRAVPVIMLT 64

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDG 137
              + Q  +D  ++G DD + KP   +E++AR+ A+ RR   +++++  +   +++    
Sbjct: 65  AKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRAPQLTDDIIDVAGLKLDPVT 124

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
                  +   +   E R+L + M +  +  +++Q+   ++G     VEE  V+ HI +L
Sbjct: 125 HRLSGHSQSLSIGPTEFRLLHFFMTHPERVFSRSQLLDQVWGDH-VFVEERTVDVHIRRL 183

Query: 198 RKKLRNKLGFDPVDSKRFLGYSI 220
           RK L        V++ R  GY  
Sbjct: 184 RKALEPSGHDAHVETVRGNGYRF 206


>gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium
           resistens DSM 45100]
          Length = 231

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V++        +G ++   +       + +S R D++ ++  +  +    L
Sbjct: 3   ILVADDDQAVRESLRRSLIFNGYTVVLASDGAEALEIIASERPDLAILDVMMPRR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+H   +P++ ++   ++   +   D+G DD + KP    E+LAR  +++RR  
Sbjct: 61  EVCRELRSHGDDIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLFRRAT 120

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S+       + +  + R+         L R E  +LE L+ N  K +++  I
Sbjct: 121 RPAINEAQSHEPLRFEDLTLNPETREVRRDERQISLTRTEFALLELLIRNPRKVLSRNNI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D     N +E +I  LRKK         + + R +GY +
Sbjct: 181 LEEVWG-YDFPTSGNALEVYIGYLRKKTEQDGESRLIHTVRGVGYVL 226


>gi|78063277|ref|YP_373185.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. 383]
 gi|77971162|gb|ABB12541.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. 383]
          Length = 227

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLP--GQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ +I RR + 
Sbjct: 61  TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYDPKLIHTVRGMGYVLE 220


>gi|332304516|ref|YP_004432367.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171845|gb|AEE21099.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 239

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 99/232 (42%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + GV ++  +  + +  L  +   D S I   ++      L
Sbjct: 5   ILIVEDDLDIANLMRVNLLELGVEID--HQTDGQLALTQALENDYSVILLDVMLPNMNGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR    +  +I ++   S    +   + G DD + KP   RE+ ARV +  R++ 
Sbjct: 63  DICRQIRDKRPMQIIIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKVH 122

Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V           +     G +R+        +  +   L   E  +L +L  + G+  ++
Sbjct: 123 VLQQSHVPSPQESEALCIGTLRIEQKNHQVFLAEQELVLTATEFELLHHLANHPGQVFSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +Q+  +++G +  +  E+ V SHI++LR KL  N      V +   +GY  +
Sbjct: 183 SQLLESVWG-YHHSGYEHTVNSHINRLRAKLEKNATSPKIVQTVWGVGYKFN 233


>gi|320355415|ref|YP_004196754.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320123917|gb|ADW19463.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 231

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++          G ++   +S   EE LQ  ARE + A+   L+  G+   
Sbjct: 6   ILVVEDDADIQQLVSYNLIKAGFNVTCADS--GEEALQLLAREPIDAMVLDLMLPGKDGN 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R   A   +P+I ++        +   + G DD V KP   R ++AR+ A  RR
Sbjct: 64  EVCRAVRGQEAIKGLPIIMLTAKSEEDDIVSGLECGADDYVTKPFSPRVLIARLEAALRR 123

Query: 119 L-------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                              + +     +  V G+   L   E  IL  L    G   ++ 
Sbjct: 124 TPEPVVDADEQAGFISRHGMDIHPGRHEVRVDGQEIHLTASEFTILALLAGRPGWVFSRQ 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI   + G +D ++    V+  I  LRKKL +      +++ R +GY I
Sbjct: 184 QIIDQVRG-YDYSITPRAVDVQIFGLRKKLGSAG--TCIETVRGIGYRI 229


>gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 242

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 105/227 (46%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +       D+G ++E  ++ +    L+   R +  A+   L+  G   LE
Sbjct: 8   LIVEDDAHIAELLRMHLRDEGYAIE--HAADGHAGLRELERGNWDALVLDLMLPGVDGLE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R  RA ++  P+I IS   S    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRRTDA 125

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++ +     G + +    R+  V G++  L  RE  +L +   N GK  ++  + 
Sbjct: 126 LARNARMESGSLTLGNLDIEPLAREVRVDGKLIELTPREFDLLYFFARNPGKVFSRLDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 186 NQVWG-YQHDGYEHTVNTHINRLRTKVETDPAEPRRILTVWGRGYKL 231


>gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 232

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 101/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +        +      L  S   D+  ++  +       L
Sbjct: 4   IMIVEDDVKIARVLELELQHEHYDTVWVENGSQALNLLESEDWDLVLLDVMIP--CLSGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  R  +S+ P+I ++   S+   ++  D G +D + KP +  E+LAR+ A  R   
Sbjct: 62  EVLRRYRMRNSRTPVILLTARNSVLDKVNGLDHGANDYITKPFNIEELLARIRAALRTGA 121

Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   ++E           + V +  R     G+   L +RE  +L YL+ N+   + + Q
Sbjct: 122 LHTGKSENSKKHEYALADLLVNTATRQVTRGGKPIELTKREFDLLCYLLKNKRIVLNREQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + ++G F+ A + NVV+ +I  LRKK+ +      + + R +GY++
Sbjct: 182 LLNEVWG-FEYAGDTNVVDVYIGYLRKKIDHGHETALIHTVRGVGYTM 228


>gi|313884593|ref|ZP_07818354.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620377|gb|EFR31805.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eremococcus coleocola ACS-139-V-Col8]
          Length = 237

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 103/238 (43%), Gaps = 31/238 (13%)

Query: 2   FVLIDDRALVKDG---------YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++I+D   V +          Y A F +DG+  EGF + + E         D+  ++  
Sbjct: 3   ILMIEDNESVSEMMEMFFENENYTATFKNDGL--EGFEAYKAEP-----KHWDIVILDLN 55

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L       +++ R IR  S + P+I ++   S    +   + G DD V KP     +LAR
Sbjct: 56  LPS--MDGMQICRQIRKISAETPIIMLTARDSESDQVIGLEMGADDYVTKPFSPMTLLAR 113

Query: 112 VAAIYRRLKVSNN---------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLM 161
           + A++RR ++  +            T  +++ +  R+     +V   L  +E  +L    
Sbjct: 114 MKALHRRAQIVPSDQHEADAEFDVTTDHLKINTATREARYNDQVIENLTPKEFDLLVTFA 173

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +  +  ++  + ++++       +E  V++HI KLR+K+   +G   + +   +GY 
Sbjct: 174 KSPKRVFSRDDLLTSLW-EDPFYGDERTVDAHIKKLRQKIE-VVGPQLIQTVWGVGYK 229


>gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 242

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 103/228 (45%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--AREDVSAIEAFLIGKGEK 59
            +++DD A ++          G  +    + + EE L++   A  D+  ++  +      
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDV--VTAGDGEEALETFRKAEPDLVVLDVMMP--KLD 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+
Sbjct: 64  GYGVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRV 123

Query: 120 K-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S+     G IR+ ++ R      E   L   E  +LE L++  G+  ++++
Sbjct: 124 DKTGATGIPSSGVIHVGNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSE 183

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           I   ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 184 ILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|229075160|ref|ZP_04208154.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228707937|gb|EEL60116.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 228

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++    +++ +E L      +V  I   ++       
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNV--LEAIDGKEALSIFEEYEVHLIILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +      +   +  I V    R   + GE   L   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 SAVKVLTADTLTSSGIHVHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  + SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTINSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225


>gi|182680287|ref|YP_001834433.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636170|gb|ACB96944.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 225

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 125/221 (56%), Positives = 165/221 (74%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V+ID+R +V  GY++ F ++G+S  GF   EF +W++S+A  D+ A+EAFL+G  ++ 
Sbjct: 1   MLVIIDEREIVTSGYVSRFANEGISSTGFRPEEFGDWVRSAAETDLFAVEAFLLGDCQER 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP+IIR  S  PLI ++D  SL+ TL  F +G DDVV KP+H REILARV AI RR +
Sbjct: 61  QGLPKIIRERSPAPLIALNDTASLEQTLSLFAAGADDVVRKPVHVREILARVGAIKRRHE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G +RVF DGRDPEV+G    LPRRERRILEYL+ NRG+RV+KTQIF++IYG+
Sbjct: 121 ERQDSTLIGDLRVFFDGRDPEVKGSTLQLPRRERRILEYLVNNRGRRVSKTQIFNSIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FDE +EENVVESHISKLRKKLR +LG+DP++S R+LGY  +
Sbjct: 181 FDEKIEENVVESHISKLRKKLRRQLGYDPINSVRYLGYCFE 221


>gi|56962170|ref|YP_173893.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908405|dbj|BAD62932.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 222

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +          +G  L   N  E         + DV  ++  L       +
Sbjct: 4   ILLIEDDAAIARYLELELKHEGFELIIENDGEGGLAKALLEKFDVILLDVMLP--KISGI 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   +  P+I ++    +   +   DSG +D + KP    E+LAR+  I+ R K
Sbjct: 62  EVLRRLRKSKETTPVILLTAKGEVSDKVTGLDSGANDYMTKPFFIEELLARIRVIF-REK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +NN    G + +  D     V+G+   L ++E  +L YL+ NR   +++  I   ++G 
Sbjct: 121 TTNNSLHWGELTMNPDTYQVIVKGQELGLTKKEYELLYYLLVNRNIALSRENIIENVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   + N+V+  I  +R+KL + +    + + R +GY I  N
Sbjct: 180 YEYYGDTNIVDVFIKNIRRKLEDVMDVRMIQTIRGIGYVIKDN 222


>gi|332140773|ref|YP_004426511.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550795|gb|AEA97513.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 224

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D + +     AL   +G S++  ++ E   +L      D++ ++  +        
Sbjct: 3   ILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYDYDLAIVDIGMP--KLDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R  R A    P++ ++     Q  ++  D+G DD + KP H+ E+LAR  A+ RR  
Sbjct: 61  EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   + GPI + +   +  + G+   L   E +++EYLM N  K ++KT++   IY 
Sbjct: 121 GQANPTIQFGPISLDTVSEELSINGKALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D  ++ NV+E  + +LRKKL       P+++ R  GY I+ N
Sbjct: 181 Q-DFDLDSNVIEVFVGRLRKKLDPAGDLKPIETLRGRGYRINRN 223


>gi|260430574|ref|ZP_05784547.1| transcriptional activator protein CopR [Citreicella sp. SE45]
 gi|260418603|gb|EEX11860.1| transcriptional activator protein CopR [Citreicella sp. SE45]
          Length = 225

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D A + D  +A   ++G S+E  +              D++ ++  L   G   L
Sbjct: 3   ILLAEDDAKIADYIVAGLSENGHSVEHVSDGRDALSYCLYNDCDLAILDRMLP--GMDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + +RA    +P++ ++    +   ++   +G DD + KP H  E++AR+ AI RR  
Sbjct: 61  SVLKALRASQKTLPVLFLTALGQVDDRVEGLAAGGDDYLTKPFHFSELVARIDAIVRRKS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K          + +    R    QG V  L  +E  ILE LM N G+ V +T +   ++
Sbjct: 121 EKKVEPVLTVHDLTLDLLSRTATRQGNVIELHAKEFSILEILMRNAGRVVTRTLLLERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F+      VVE+H+S+LR K+        + + R  GYS+
Sbjct: 181 N-FNFEPNTTVVETHMSRLRAKVDRPFDTPLIHTIRNTGYSM 221


>gi|188589302|ref|YP_001921842.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|251780126|ref|ZP_04823046.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188499583|gb|ACD52719.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|243084441|gb|EES50331.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 228

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++        + +    +      ++  ++  +       +
Sbjct: 5   ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQ--IDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I IS        +    +G DD + KP +  E++ARV +  RR + 
Sbjct: 63  EACMRIRKDKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQK 122

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N          E G + + +D R   V  +   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTGSNNQKVIIEIGDLTINTDTRQIWVGEKEVRLTPKEFDILELLARNKGIVLSIRKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +    +N V  HI+ LR+K+  +      + +   +GY I
Sbjct: 183 EEVW-KEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGYKI 228


>gi|86606944|ref|YP_475707.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555486|gb|ABD00444.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 239

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G S+E   +         + +  +  ++  L        
Sbjct: 4   ILIIDDDPSICALLKRYLQRQGYSVEVATTGAEGLQQLRAFQPGLVILDLNLPDV--SGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L + ++  + V ++ ++   +    L  F  G DD + KP    E+ ARV AI RR + 
Sbjct: 62  DLCQQMQKETGVYVLMLTSRVNPADKLQGFQLGADDYLTKPFSLPELQARVQAILRRGRT 121

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S        + +    R+         L   E  +L  +  + G+   ++++   
Sbjct: 122 RTETGSAPVLTFPSLVIDPTTREVIRDRRPINLTALEFDLLYAMARHPGRVWRRSELIQE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++  F+   +E VV+ HI ++RKKL  +    + + + R +GY  +
Sbjct: 182 VWD-FNHEGDERVVDVHIGQIRKKLETDTSQPELIRTVRGVGYKFE 226


>gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 18/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF----EEWLQSSAREDVSAIEAFLIGKG 57
            +L+DD   +       F  D + LEG++ L      E  +QS  +  +  ++  +    
Sbjct: 8   ILLVDDEEEI-----ISFIQDSLELEGYHVLTAGSGQEALIQSKRQPSLIILDVMMPE-- 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +E+ + +R  +Q P++ +S   S    +    +G DD + KP    E+ AR+ A  R
Sbjct: 61  MDGIEVCKQLRETTQCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIHAHLR 120

Query: 118 RLKVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R +  + + E G +R     +   G      G   PL  +E +I+E L  ++G+  ++ Q
Sbjct: 121 REQRIHTQKEQGILRFQALTIDCKGHAVSCNGHDLPLTNKEFQIVELLAMHQGQVFSREQ 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           I+  ++GL D   +++ +  HI K+R KL         + +   +GY  D
Sbjct: 181 IYEKLWGL-DADGDDSTITEHIKKIRAKLAAHAQNRSFIQTVWGIGYKWD 229


>gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 237

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +     +  E  Q++ R     I   ++  G    
Sbjct: 5   ILVIEDEPTLSRLLSYNLAQEGYETDV--VGDGAEGYQAAVRNTYDLIILDIMLPGMNGF 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R   S+ P+I ++   + +  +     G DD + KP    E+L+RV+A+ RR  
Sbjct: 63  EVLSKLRQKGSKTPVIILTARNAEEEVVQGLKFGADDYITKPFGVAELLSRVSAVLRRTG 122

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                       +     G + ++ +  +  +  +  PL  +E  +L YL+   G  V +
Sbjct: 123 NKEVEDTGTHSGDKVITVGDLFIYPEKYEVVLNNQSIPLRPKEFEVLLYLVQRLGIVVTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + + ++G FD    +  V+ H+S LRKKL        ++S R +GY +
Sbjct: 183 DDLMNVVWG-FDYIGGQRTVDVHVSSLRKKLEMNQQSVQIESIRGVGYKL 231


>gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
 gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
          Length = 232

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 102/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G      +  +    L  +A  D+  ++  L        
Sbjct: 6   ILIVDDEKGIQDIVSQALKRRGYETICASDGDSALDLAFAAHPDLIILDLMLPR--MDGW 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++++ +   +P+I ++        ++  + G DD + KP    E++ARV  + RR
Sbjct: 64  EVCRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRR 123

Query: 119 LKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +++    +   G + +  + +   ++G    L   E R+LE L    G+ V++ ++   
Sbjct: 124 TRMTEETRQITNGDLVMDIENQWVMLRGNSLDLSPTEFRLLELLAHRFGRTVSRDELLGR 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           I+ L+    +   V+ HIS+LRKKL + K     + + R  GY I W
Sbjct: 184 IWNLY--GGDTRTVDVHISRLRKKLDDNKHPALLIQTLRGRGYRITW 228


>gi|269798762|ref|YP_003312662.1| transcriptional regulator [Veillonella parvula DSM 2008]
 gi|269095391|gb|ACZ25382.1| two component transcriptional regulator, winged helix family
           [Veillonella parvula DSM 2008]
          Length = 224

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIA-LFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L++D  ++ +G  A     + ++++  FN  +  +++ +S+  DV  ++  +      
Sbjct: 3   ILLVEDEEML-NGITAKYLRAENMTVDTCFNGQQAIDYVNTSS-YDVIVMDIMMPI--LD 58

Query: 60  VLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +     +R      P++ ++   SLQ  +   ++G DD + KP    E+ AR+ A+ RR
Sbjct: 59  GISALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARR 118

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + N    GP+ +    R  +  GE   L  +E  +L YL +N    +++ QI   +
Sbjct: 119 NARHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+++ +I  LRKK+        + + R +GY +
Sbjct: 179 W-EYDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVL 220


>gi|213692629|ref|YP_002323215.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524090|gb|ACJ52837.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458780|dbj|BAJ69401.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 240

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 87/228 (38%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +              S  R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPV--MDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR++ +
Sbjct: 74  ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133

Query: 123 ---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        + G I +    R   V GE   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKLLDFGSIVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G D + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GADTIRTVHGVGYAFE 236


>gi|154495976|ref|ZP_02034672.1| hypothetical protein BACCAP_00259 [Bacteroides capillosus ATCC
           29799]
 gi|150274859|gb|EDN01915.1| hypothetical protein BACCAP_00259 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 13/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF-EEWLQSSAREDVSAIEAFLIGKGEK 59
           + ++++D   +++     F   G ++  + S E   E  Q      +  ++  L   G  
Sbjct: 4   VILVVEDDESIREMLRYYFQSVGYTVRAYESGEAMFEGEQGQDCPVLCILDIMLP--GMD 61

Query: 60  VLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            LE+ R +RA      VP+I ++   +    ++  ++G DD V KP    E+ ARV A+ 
Sbjct: 62  GLEILRRLRADRDRESVPVILLTARTAEMDRVNGLEAGADDYVVKPFGIMELQARVKAVL 121

Query: 117 RRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR +   +      G + +    R     GE   L  +E  +L  L  +RG  + + +I 
Sbjct: 122 RRTRREEDNRLIRCGDLEIDPAARVVRRGGEQVDLTFKEFELLRLLATHRGVALTRDEIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +++  +D   E   V+ H+  LR+KL    G + + + R +GY ++
Sbjct: 182 QSVWD-YDYTGETRTVDMHVKTLRQKL----GEEYITTVRGVGYKMN 223


>gi|126651205|ref|ZP_01723415.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592043|gb|EAZ86109.1| two-component response regulator [Bacillus sp. B14905]
          Length = 225

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 107/222 (48%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++       ++G+ +    + +  + L   A E V  +   ++       
Sbjct: 4   LLMVDDDAHIRELVKVFLQNEGLDV--IEATDGVDALSKLASEKVDMVIMDIMMPNMDGW 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   IR+ ++ +P++ ++        +  F  G DD + KP    E++ RV +I +R +
Sbjct: 62  ALCEEIRSYNTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYR 121

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ +   E G +++     + ++ GE+  L  +E  +L  L +  GK  ++ Q+   I+G
Sbjct: 122 IALSQVVEAGNVKLDRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +E  V+ HI ++R++   ++    + + R LGY ++
Sbjct: 182 -YDYEGDERTVDVHIKRIRERFPQEISGFAIRTIRGLGYRLE 222


>gi|33865481|ref|NP_897040.1| two-component response regulator, phosphate [Synechococcus sp. WH
           8102]
 gi|33632650|emb|CAE07462.1| two-component response regulator, phosphate [Synechococcus sp. WH
           8102]
          Length = 235

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDV---SAIEAFLIGKGE 58
            ++++D   +++    +   +G  +      +  E L     E       +   L+  G 
Sbjct: 10  LLVVEDDDSIRETVGEVLRAEGYDV--LTCGDGAEALNLFTSEPAQQVDLLVLDLMLPGL 67

Query: 59  KVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             L+L R +R  ++  P++ IS   S    +   + G DD + KP   RE++AR  A+ R
Sbjct: 68  GGLDLCRELRRINNNTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLR 127

Query: 118 RLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +   +          + ++ +       G    L  +E +ILE  + +  +  ++ Q+
Sbjct: 128 RAQQDPSVLPEIYSHANLCLYVNECRVTRDGNDLNLSPKEYKILELFLQHPKRVWSRDQL 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              I+G+ D   +   V+ HI  LR+K+       + + + R  GY  
Sbjct: 188 LEKIWGI-DFVGDTKTVDVHIRWLREKIEEQPSSPELIRTVRGFGYRF 234


>gi|129159|sp|P28835|YCF27_PORAE RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|14153|emb|CAA44464.1| regulatory protein [Porphyridium aerugineum]
          Length = 240

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++          G  +   ++ + EE L    RE  + +   L+       
Sbjct: 6   ILVIDDEASIRRILETRLSIIGYDV--ISAADGEEALSIFKREHPNLVVLDLMMPKLDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I ++    +   +   + G DD + KP   +E+ AR+ ++ RR+  
Sbjct: 64  GVCQELRKESDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRRVDK 123

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +++            G +++  +        E   L   E  +LE L++  G+  ++  I
Sbjct: 124 ASSNNNLPNSGIINIGFLKIDVNKHQVYKNNERVRLTGMEFSLLELLISKAGQPFSRATI 183

Query: 174 FSAIYGLF-DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
              ++G   +  V+  VV+ HIS+LR KL +     D + + R  GY
Sbjct: 184 LQEVWGYTAERQVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGY 230


>gi|194333603|ref|YP_002015463.1| winged helix family two component transcriptional regulator
           [Prosthecochloris aestuarii DSM 271]
 gi|194311421|gb|ACF45816.1| two component transcriptional regulator, winged helix family
           [Prosthecochloris aestuarii DSM 271]
          Length = 236

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   +   S E    L  S   D+  ++  L   G    
Sbjct: 6   ILVVEDDHNLAKLLKYNLEKAGYKCQHALSGEEALDLLKSKSYDIMLLDIMLP--GMDGF 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R H     +P+I ++        +  F+ G+DD V KP   RE+  R+ AI +R
Sbjct: 64  EVCRKVRQHQLYKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKR 123

Query: 119 LKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +      +       + V        ++G    L   E ++L  L+  RG+  ++  + 
Sbjct: 124 DRRGKREIQEVMTCDGLEVDISRHRVSLEGRELTLTLMEFKLLVVLLKRRGQAQSRETLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++ + D+++    +++HI++LR+KL        + + R LGY ++
Sbjct: 184 SDVWDV-DKSINTRTIDTHITRLREKLGQTG--RLIKTVRGLGYKLE 227


>gi|312898268|ref|ZP_07757659.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620765|gb|EFQ04334.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 229

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        DG  +      +       +   D+  ++  L   G+   
Sbjct: 4   ILLIEDDLAIAELERDYLEADGFEITIETDGQKGLESALTENYDLLLVDVMLP--GKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R +R    +P++ IS        +     G DD ++KP    E++ARV A   R   
Sbjct: 62  QIVREVRKKKDIPILMISAKREDIDKIRGLGLGADDYISKPFSPSELVARVKAHSARYER 121

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K   +  E G + +  +G    ++G+   L  +E  +L +L  NRG   +K  +
Sbjct: 122 LIAKADKSLASFIEVGSLEIQPEGHRVFIRGKEISLTHKEFELLLFLARNRGIVFSKDAL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++GL D   +   V  H+++LR+KL  +    + +++   +GY +
Sbjct: 182 FERVWGL-DAVGDTATVMVHVNRLREKLEKDPSKPEFIETVWGVGYRL 228


>gi|161503820|ref|YP_001570932.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865167|gb|ABX21790.1| hypothetical protein SARI_01907 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 226

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 98/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++   + +  + L  + RE  S I   ++  G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVD--YACDGRDGLHLALREHYSLIILDIMLPGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQTPVIYLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +      +   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLSINGLDMDATRQSVSRNKKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLITTVRGMGYRL 218


>gi|91976474|ref|YP_569133.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91682930|gb|ABE39232.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 224

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +         D G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   LLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R  R    +P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 63  LEAWR--RNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V+G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELTCGPVALDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 216


>gi|320093788|ref|ZP_08025635.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979289|gb|EFW10785.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 238

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 10/222 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD  ++           G+S +          L  +   DV  ++  L   G   +E+ R
Sbjct: 16  DDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGLP--GMDGVEVCR 73

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            +R  S   ++ ++        L     G DD + KP   RE++AR+  + RR +  +  
Sbjct: 74  QLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAGSTG 133

Query: 126 A------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           A        G + +    R  E+      L R E  +L+ L  + G  + + Q+  A++G
Sbjct: 134 ATAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDAVWG 193

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             D   ++++V+ HI+ LRKKL  +      V + R +GY +
Sbjct: 194 E-DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234


>gi|225182095|ref|ZP_03735524.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225167214|gb|EEG76036.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 226

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G ++E  +S  +    +   +   S +   +        
Sbjct: 4   ILLVEDDKTIAMGIEYALTQEGFTVEVCHSAGYAR--ERWGKGGFSLVILDVSLPDGNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R     S  P+I ++        +   D G DD + KP   RE+++R+ ++ RR   
Sbjct: 62  ELCREFGGQSDTPVIFLTACDEEVNVVMGLDMGADDYITKPFRVRELVSRIKSVLRRYNK 121

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S   N     G + + +        GE   L   E R+L  L  ++G  + + QI   ++
Sbjct: 122 SMPNNAEINLGKLIINTAEAKVYKDGEAVLLTALEYRLLLTLANSKGLTLTRNQILEGLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +  + V +N +  +I +LR+K+ +       + + R LGY +
Sbjct: 182 DVAGDFVNDNTLTVYIKRLREKIEDDPQQPQIIKTVRGLGYKV 224


>gi|218554547|ref|YP_002387460.1| transcriptional regulatory protein YedW [Escherichia coli IAI1]
 gi|218361315|emb|CAQ98899.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli IAI1]
          Length = 223

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|95928685|ref|ZP_01311432.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135475|gb|EAT17127.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 228

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G+ +   ++   +   Q+    D+  ++  L   G    
Sbjct: 4   ILIIDDDNELCELLTDYLTTEGLQVSCVHNGS-DGARQAVEHYDLVILDVMLP--GMNGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S+VP++ ++        +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  DVLRQVRQSSEVPVVMLTARGEDIDRIVGLELGADDYLPKPFNPRELVARIRAIQRRTDN 120

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N        G + +   GR          L   E  +L  L+++ G+ V++  + S + 
Sbjct: 121 RNQMDAPLRVGDLSLDPGGRQVRCHDTEIVLTSVEFSLLHMLLSHAGQVVSREDMVSQVL 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           G      +   ++ HIS +RKKL     G + + + R +GY
Sbjct: 181 GRHLSPYD-RSIDVHISSVRKKLGQTPSGRERIKTIRGVGY 220


>gi|215487165|ref|YP_002329596.1| transcriptional regulatory protein YedW [Escherichia coli O127:H6
           str. E2348/69]
 gi|312967163|ref|ZP_07781381.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
 gi|215265237|emb|CAS09628.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O127:H6 str. E2348/69]
 gi|312288627|gb|EFR16529.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
          Length = 223

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|198242939|ref|YP_002215027.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937455|gb|ACH74788.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326622781|gb|EGE29126.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 226

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+        + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDEPFEKKLIMTVRGMGYRL 218


>gi|186683314|ref|YP_001866510.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465766|gb|ACC81567.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 624

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+              ++     E    L +    D+  ++  L       +
Sbjct: 3   ILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILP--KLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R    Q+ ++ ++   +    +   D+G DD V KP   +E+ AR+ A+ RR  
Sbjct: 61  SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     E G + +     +         L  +E  +L+  + N  +  ++  I   ++ 
Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              +  EEN ++SHI  LR+KL+     +D +++   +GY +
Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRL 222



 Score = 57.6 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 13/130 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G++L+      +     +    D+  ++A +       +
Sbjct: 500 IMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPY--INGI 557

Query: 62  ELPRIIRA---HSQVPLIG----ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           EL +++R       +P++     +S    +   +  F  G DD V+KPI    ++A +  
Sbjct: 558 ELCQVVRNDPCWKLLPVVFVVDNLSA--DIVEQI--FAIGADDCVSKPIVSSTLIACILN 613

Query: 115 IYRRLKVSNN 124
              R K+  N
Sbjct: 614 RMERNKLIKN 623



 Score = 36.0 bits (83), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 37/110 (33%), Gaps = 20/110 (18%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++I +   V +G +    + G+ ++   +L     +  S   DV  ++  +    E  
Sbjct: 354 LLLVISNDRQVVEGLVNEAENQGLQVKIATNLTAARSIIPSLNPDVVLLDLDIE---EDS 410

Query: 61  LELPRIIRAHS-----------------QVPLIGISDYPSLQTTLDFFDS 93
           L+L   +   S                 Q+P++  ++  +          
Sbjct: 411 LKLLIELSQRSATLGGTPSPTVGETPTPQIPVLVFTERNNFSDACGGLRL 460


>gi|282854876|ref|ZP_06264210.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282582022|gb|EFB87405.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314924356|gb|EFS88187.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965881|gb|EFT09980.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981603|gb|EFT25696.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092243|gb|EFT64219.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094815|gb|EFT66791.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104709|gb|EFT76685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328660|gb|EGE70420.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL103PA1]
          Length = 232

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++         G  ++            S +  D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSVADGVEALAHLSGSHPDAVIMDVMMPR--LDGL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R++R++ + VP++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR +
Sbjct: 63  EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +  +     + +    R+         L R E  +L   + N  + + ++ + 
Sbjct: 123 PEPGPDEAPEQLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
             ++G FD     N +E +I  LR+K  +      + + R +GY + + N
Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDGEARLIHTVRGVGYVLREAN 231


>gi|228994533|ref|ZP_04154374.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228765212|gb|EEM13925.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 248

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +++        +G  +    N +E  + L  + + D+  ++  +    +  
Sbjct: 13  ILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWD-LFLTHQPDLILLDLMM--SKKDG 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            EL   IR  S VP+I ++     +  +     G DD V KP   RE++ RV  I +R  
Sbjct: 70  WELCEEIRQQSNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKRGN 129

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +  +   E   ++++   R   V      L  +E  +L  +  +  +  +++Q
Sbjct: 130 QIPIQEEEFLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAKHPKQVFSRSQ 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
           +   I+  F+     + V   +S+LR+KL      +  + +   +GY  + N
Sbjct: 190 LLELIWD-FEYDGVTHTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYCFEPN 240


>gi|126650075|ref|ZP_01722308.1| DNA-binding response regulator [Bacillus sp. B14905]
 gi|126593247|gb|EAZ87209.1| DNA-binding response regulator [Bacillus sp. B14905]
          Length = 235

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 23/232 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSL------EFEEWLQSSAREDVSAIEAFLIGK 56
           ++++D   + +        D +S+  F+S       E   +LQ SA  D   ++  L   
Sbjct: 7   LIVEDENDIANII-----KDYLSVHQFDSHIVRTGHEAILYLQESA-PDFVILDLSLPDC 60

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
               +E+ R IR HS V ++ +S   S    +     G DD + KP    E++AR+ A  
Sbjct: 61  --DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHL 118

Query: 117 RR-------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           RR         V  +      I +           +  PL  +E  +L +L  NR +  +
Sbjct: 119 RRQDRWLQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFS 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           K+Q+  A++G +D   +EN +  +I ++R+K+  N      + +   +GY  
Sbjct: 179 KSQLLDAVWG-YDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229


>gi|159896979|ref|YP_001543226.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890018|gb|ABX03098.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 229

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +  G   L    G  + +  +  +    LQ+     +  ++  L       
Sbjct: 4   ILIVDDDPAILSGVSTLLEQAGYEIAQAASLAQARSHLQAFNPPSLVILDLMLPD--GDG 61

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R IR   Q +P++ +S    LQ  ++    G DD + KP    E++ARV AI R  
Sbjct: 62  FELCRQIRQGGQYLPILMLSARDELQDRVEGLTVGADDYLTKPFAPAELVARVRAILRLA 121

Query: 120 KVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E G +R   + +      ++  L  +E  +L  LM        +  +   
Sbjct: 122 QHQRETIGSFECGKLRFDCELQRAWWDEQLLELTPKESGVLLQLMRQPSHVWGRLALLQT 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           ++G  +   +  +V+  + +LR K+       DP+ + R  GY +  
Sbjct: 182 VWGT-NFLGDSRIVDVCVQRLRAKINQLDANADPIQTVRGFGYRLKC 227


>gi|329925314|ref|ZP_08280255.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5]
 gi|328939922|gb|EGG36257.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5]
          Length = 232

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 95/229 (41%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G      +S        ++   D+  ++  L  +    L
Sbjct: 6   ILIIEDEEPIADLLAYGLAMEGFETRTASSGAAGFRELAAFHPDLLLLDWMLPDQ--SGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +     +P+  I+    +   +   + G DD + KP   RE++AR+  I RRL  
Sbjct: 64  DICKKVTTDYNIPIFMITAKSDITDKVLGLEFGADDYITKPFDLREVVARIRTILRRLDQ 123

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +N                I + ++ R     G    L  +E  +L  +  +RGK   +++
Sbjct: 124 ANQGDREGAPEAVIRFKGIEIVTEERLVRKDGSPVDLTPKEFDLLMTMYGHRGKIYTRSE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++G +D   +   V++HI +LRKKL      D + +   +GY  +
Sbjct: 184 LLDLVWG-YDFMGDTRTVDTHIQRLRKKLD---AGDLITTVFGIGYKFE 228


>gi|228909410|ref|ZP_04073235.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850187|gb|EEM95016.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 225

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R   +
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHISTVIRVGYKFE 224


>gi|283471583|emb|CAQ50794.1| response regulator protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 224

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++  +   G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMM--DGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIH 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN+    G + +     + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|153810431|ref|ZP_01963099.1| hypothetical protein RUMOBE_00812 [Ruminococcus obeum ATCC 29174]
 gi|149833610|gb|EDM88691.1| hypothetical protein RUMOBE_00812 [Ruminococcus obeum ATCC 29174]
          Length = 221

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  L++D   +++  +      G+  +GF                +  ++  L    E  
Sbjct: 1   MIYLVEDDESIRELVVYTLKSQGMDAKGFERPSLFWKELEKEVPALILLDIMLPE--EDG 58

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + + R +R        P+I ++   +    +   DSG DD + KP    E+++R+ A  R
Sbjct: 59  ISILRKLRTRPDTRKIPVIMLTAKGTEYDVVMGLDSGADDYIPKPFRMMELISRIKARLR 118

Query: 118 RLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R +           + +        V  E   L  +E  +L  L+ N G  +++TQ+ + 
Sbjct: 119 RAEDKGAEEYHLENLYLCPGRHIVTVDQEPVNLTLKEYEMLVLLLKNSGMVLSRTQLLNQ 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G ++   E   V+ HI  LR+KL +    D +++ R +GY I
Sbjct: 179 IWG-YEFDGESRTVDVHIRTLRQKLGSAG--DLIETVRGVGYKI 219


>gi|187928863|ref|YP_001899350.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725753|gb|ACD26918.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 228

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +      L  +   D+  ++  L        
Sbjct: 3   LLVVEDEPKTGEYLQQGLTEAGFVVDLACNGTDGRHLAMTGEYDLLVLDVMLPDV--DGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +RA  Q VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  QIVQSLRASEQAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+ +R +   + +    R     G+  PL  +E  +LE L+  RG+ + ++ I S ++
Sbjct: 121 SAVTADRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLE 222


>gi|304405183|ref|ZP_07386843.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346062|gb|EFM11896.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + +++    +   +G       + + EE  +   +EDV+     ++   +  L
Sbjct: 5   ILIADDDSNIRELLRFILQREGFR--ALEAADGEEASRVMRQEDVALAIVDVMMPEKDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L   IR    +P++ ++    L      F SG DD + KP    E+L RV A+ RR + 
Sbjct: 63  MLCEEIRRDYDIPVMLLTARGELDDKARGFRSGTDDYMVKPFEPDELLYRVRALLRRYRI 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS+ + + G   V     +  V GE  PLP +E  +L  L +  G+   + Q+   I+G 
Sbjct: 123 VSSEKLQLGGTTVDRHSYEVNVHGENVPLPLKEFELLAQLASQPGRIFTREQLLRPIWGA 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
            D   ++  ++ HI +LR++           + + R LGY ++
Sbjct: 183 -DYEGDDRTIDVHIKRLRERFAPFGLSAGFAITTVRGLGYKLE 224


>gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 233

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+D         G +++   +         +   D+  ++  +   G   LE
Sbjct: 9   LVVDDDETVRDVVRRYLEVAGFTVDVAGNGAEGLAKFGAHEPDLVVLDVMMP--GINGLE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + +R  SQVP++ ++     +  +     G DD V KP   +E+  RVA++ RR +  
Sbjct: 67  VCKRLRQVSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRRARMP 126

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      G +R+    R   + G   PL  RE  +L + +A+ G   ++  +   +
Sbjct: 127 RPEPAAAVLVDGDLRLQMKARTATLSGRELPLTTREFDLLAFFLAHPGVAYSRADLLEKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +    +  +++ V  H+ +LR+K+ R+      V +   +GY  D
Sbjct: 187 WSW--DFGDQSTVTVHVRRLREKIERDPAKPTRVATVWGVGYRYD 229


>gi|296132714|ref|YP_003639961.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031292|gb|ADG82060.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 232

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G ++    +    + L    R     +   ++       
Sbjct: 6   ILIADDEPKILKFLAGFLQREGFAV--ATAANGFDALAEFNRWQPDLLVLDVMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        +     G DD + KP    E+L R+ AI RR+  
Sbjct: 64  EVCRKIREQSNVPIIFLTAKNETFDKIMGLTLGSDDYLTKPFDSAELLLRIRAILRRVAD 123

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++     +  +   + +    R  E +G+   L  +E  +L  L ++  +   + Q+   
Sbjct: 124 NSSVENKDVIKVPGLVINRATRTVEFEGKEIELTPKEFDLLWLLASHPNQVFTRDQLIYQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+   +   +  +V + + +LR+K+  +      + + R +GY  
Sbjct: 184 IWDT-EYCEDTGIVTTLVKRLREKIELDTANPRYIKTIRGVGYKF 227


>gi|187919922|ref|YP_001888953.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718360|gb|ACD19583.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 225

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G +++  N       L      DV  ++  L   G    
Sbjct: 3   ILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLP--GIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +RA    P++ ++    +   +   + G DD + KP    E+LARV  + RR   
Sbjct: 61  TVVKTLRAKRTTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   + G + +  + R  +  G    L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRTKIDDDFPVKLIHTVRGVGYVLE 220


>gi|222148026|ref|YP_002548983.1| two component response regulator [Agrobacterium vitis S4]
 gi|221735014|gb|ACM35977.1| two component response regulator [Agrobacterium vitis S4]
          Length = 252

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++      DV  I+  L  +    L
Sbjct: 30  ILVIEDDLEAAAYMTKAFREAGIMADHASDGEAGLFMGCENTYDVMIIDRMLPRR--DGL 87

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R  S   P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 88  SVISELRKRSINTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 147

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +     +    G+   L  RE R+LEYLM N G+ V +T +   ++
Sbjct: 148 TPEQDMIYRVGDLELDRLSHEVRRAGKEILLQPREFRLLEYLMKNAGQVVTRTMLLEHVW 207

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 208 D-YHFDPQTNVIDVHVSRLRSKIEKDFDRPLLKTVRGAGYMI 248


>gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 241

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 105/227 (46%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       D+G +++  ++ +    L+   R    A+   L+  G   LE
Sbjct: 8   LIVEDDTHIAELLRMHLQDEGYAVQ--HAADGNAGLRELERGSWDALVLDLMLPGVDGLE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRRTDA 125

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++ +   E G +RV    R+ +V+G+   L  RE  +L +   + GK  ++  + 
Sbjct: 126 LARNARMESGLLELGNLRVDPVAREVQVEGKSVELTPREFDLLYFFARHPGKVFSRLNLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 186 NQVWG-YQHDGYEHTVNTHINRLRMKVEADPTEPRRILTVWGRGYKL 231


>gi|78045188|ref|YP_358964.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997303|gb|ABB16202.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 234

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G  +E   + +           D+  ++  L   G    E
Sbjct: 5   LIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEYDLILLDLMLP--GIDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +RA    P++ +S        +     G DD + KP    E++ARV A   R    
Sbjct: 63  VLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGRYERL 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + + +  E   + + +  R      +   L  +E  +L +L  N  +   K ++F  
Sbjct: 123 TGGRKNQDLLEFPGLVIDTAARRVFAGDKEVNLTGKEFDLLLFLAKNPNRVFTKEELFER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+G+ D   + + V  HI KLR+K+  +      +++   +GY  
Sbjct: 183 IWGM-DSLGDLSTVTVHIRKLREKIEKDPSNPQYIETIWGVGYRF 226


>gi|172038915|ref|YP_001805416.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700369|gb|ACB53350.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 243

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    +   A  D+  ++  +        
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAVPDLVVLDVMMP--KLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGAPGIPSSGVISIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|303248202|ref|ZP_07334466.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302490466|gb|EFL50375.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 227

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 96/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G + E   + +  + L  + R   + I   L+  G    
Sbjct: 6   ILIVEDDDDIVELLAFNLQSAGFATE--TAKDGYDALTKARRTPPAGIILDLMLPGLDGF 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + ++   +    P+I ++        +   + G DD V KP   RE++ R+ A+ +R
Sbjct: 64  EVCKELKRDPKTAAAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKR 123

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 R +      + V        + GE   L   E R+L  L  + G+ + + ++ +
Sbjct: 124 HAPEQERRQVLSRDGLSVDLGAHRVTLDGEEVALTATEFRLLAELFQSTGRVLTRDRLLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++G ++       V++HI +LR+KL +      +++ R +GY  
Sbjct: 184 SVWG-YEFEGYARTVDTHIRRLRQKLGS--CARMIETVRGVGYRF 225


>gi|229134404|ref|ZP_04263217.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229168317|ref|ZP_04296042.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228615143|gb|EEK72243.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228649025|gb|EEL05047.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R   +
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFE 224


>gi|161506505|ref|YP_001573626.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|160346743|gb|ABX19826.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
          Length = 228

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 4   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLP--GQDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ +I RR + 
Sbjct: 62  TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 122 RDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 182 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 221


>gi|158521941|ref|YP_001529811.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158510767|gb|ABW67734.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 233

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 93/228 (40%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG  +    S E    +  S R D+  ++  L   G   L
Sbjct: 6   ILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLP--GIDGL 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IR   ++   P++ +S        +   + G DD + KP   + ++AR+ ++ RR
Sbjct: 64  EVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRR 123

Query: 119 LKV------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +                I +       EV G+   L   E  IL +L +  G    + Q
Sbjct: 124 QQAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFTRWQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   I G    AV +  V+  IS LRKKL +    + +++ R +GY  
Sbjct: 184 IVDKIRGEH-YAVTDRSVDVLISGLRKKLEDYG--EYIETVRGVGYRF 228


>gi|87200082|ref|YP_497339.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135763|gb|ABD26505.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 225

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++     E   +L S+   D   ++  L       L
Sbjct: 3   ILIVEDEPTLGKQLKNTLEQNGYAVDLSVDGEDGHFLGSTEEYDAVILDLGLPE--IDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  + R    + P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G +R+ +      + GE   L  +E ++L YL+ ++GK V++T++   IY 
Sbjct: 121 GNSSSELTAGDVRLDTRSGRVTLNGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G D + + R LGYS+D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GPDVITTIRGLGYSLD 217


>gi|229060229|ref|ZP_04197598.1| Sensor histidine kinase [Bacillus cereus AH603]
 gi|228719111|gb|EEL70723.1| Sensor histidine kinase [Bacillus cereus AH603]
          Length = 231

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 12/218 (5%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +       ++G ++  F + + +E +Q  +  +V  +   ++      LE+ + +R ++ 
Sbjct: 16  ELLAVYLRNEGYNI--FKAYDGDEAIQMISAYEVDLMILDIMMPKRNGLEVCQEVRENNT 73

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--------N 124
           VP++ +S        +    +G DD + KP +  E++ARV A+ RR    N         
Sbjct: 74  VPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNTATQKKDDG 133

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 + +       +V  E   L   E  IL  L +N G+  +  +IF  ++   D  
Sbjct: 134 IIRIRAVEIHKHNHTVKVNNEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNE-DGY 192

Query: 185 VEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
                V  HIS LR KL   + G   + +   +GY I+
Sbjct: 193 GSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIE 230


>gi|167768194|ref|ZP_02440247.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
 gi|317499089|ref|ZP_07957368.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709718|gb|EDS20297.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
 gi|291560216|emb|CBL39016.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893609|gb|EFV15812.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 233

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 11/228 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       ++  ++  F + +           D++ ++  L        E
Sbjct: 7   LVVDDEKEIADFIELYLKNENYNVHKFYNGKDALACVEHENIDLAILDVMLPD--IDGFE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P+I ++   S    ++    G DD + KP    E++ARV A  RR    
Sbjct: 65  ILKQIRLTHNFPVIMLTAKVSSMDKINGLTLGADDYIEKPFEPLELMARVKAQLRRFTRY 124

Query: 123 N--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           N        +  E   + +           E   L   E  IL  L  NRGK ++   +F
Sbjct: 125 NDGSGMNQEDTLEIAGLILNRATHQCTYGEEEITLTPLEFSILWILTQNRGKVISSENLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             ++         N V  HI  LR+KL   +G  + + +   +GY ++
Sbjct: 185 EQVWKEKYFKNNNNTVMVHIRHLREKLGEVMGHKELIKTVWGVGYKVE 232


>gi|146310223|ref|YP_001175297.1| DNA-binding response regulator CreB [Enterobacter sp. 638]
 gi|145317099|gb|ABP59246.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 229

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + +  I +   +G +++ F                ++ ++  L       
Sbjct: 5   LIWLVEDEISIAETLIYMLSQEGFAVKAFERGLPALDEAHRQAPALAILDVGLPD--ISG 62

Query: 61  LELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R +   H  +P++ ++        L   + G DD V KP   RE+ ARV  I RR+
Sbjct: 63  FELCRQLLAQHPSLPVLFLTARSDEVDKLLGLEMGADDYVAKPFSPREVCARVRTILRRM 122

Query: 120 KVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + S   ++    G   +          G   PL R E  +L+ L+   G+  ++ Q+   
Sbjct: 123 QKSAAPSDIVRIGQFELNEPAAHISWCGHALPLTRYEFLLLKTLLNAPGRVFSRQQLMDK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           ++G   ++ +   V++HI  LR KLR       P+ + R +GYS+
Sbjct: 183 VWGDEGDSFD-RTVDTHIKTLRAKLRAINADLSPISTHRGMGYSL 226


>gi|89896827|ref|YP_520314.1| hypothetical protein DSY4081 [Desulfitobacterium hafniense Y51]
 gi|89336275|dbj|BAE85870.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 234

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +      +   +   L   ++ E           D+  ++  L        E
Sbjct: 8   LLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL--IDGYE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R IR  S+VP++ +S    +      F+ G DD + KP    E+  RV A+ RR    
Sbjct: 66  VCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFDK 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      +   G + +  +  +  V+G+   L  +E  +L ++  +  +   + Q+
Sbjct: 126 EQSAPKARKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           F+ ++G  +   + + +   I KLR+K+ R+      + +   +GY  
Sbjct: 186 FAHMWG-DEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232


>gi|302875335|ref|YP_003843968.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688915|ref|ZP_07631361.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578192|gb|ADL52204.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++    +    E L+      V  I   ++      +
Sbjct: 6   ILVVDDEKEIRELIEIFLKNEGYTV--VKATNGVETLEILENTIVDLIILDIMMPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR +  +P+I +S        +    SG DD V KP +  E+LARV +  RR K 
Sbjct: 64  EACLNIRKNRNMPIIMLSAKNQDMDKILGLTSGADDYVEKPFNPLELLARVKSQLRRYKK 123

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N          E   + +  +  + ++      L  RE  IL  L  NRG      +I+
Sbjct: 124 LNVGSENKEGVIEIDNLTIDVNTHEVKLDNREINLTAREFDILLLLARNRGIVFNTEKIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             ++   +    +N +  HI  +R+K+         + +   +GY I+
Sbjct: 184 EKVW-KDEFFESDNTIMVHIRNIREKIEENPKKPVFIKTIWGVGYKIE 230


>gi|238753858|ref|ZP_04615218.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC
           29473]
 gi|238707846|gb|EEQ00204.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC
           29473]
          Length = 239

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +      L   +   +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYQTQWLVNGAEVVALVRQSPPAIILLDLMLP--GSNGIS 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR  + 
Sbjct: 73  ICREIRQFSDVPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYRP 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +  P+++          G    L   E R+L+ L    G+   + Q+ + +Y  +
Sbjct: 133 RDVPTDRAPLQIDESRFHASYHGNTLDLTPAEFRLLKTLAMQPGQVFTREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
              V +  ++SHI  LR+KL +       + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLRRKLESLDEEKAFIRAVYGIGYRWE 232


>gi|229134011|ref|ZP_04262831.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228649346|gb|EEL05361.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 228

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++    +L+ +E L      +V  I   ++       
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNV--LEALDGKEALSIFEEHEVHLIILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYS 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I V    R   V GE   +   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 STVNVSTADTLTSSGIHVHFPSRTVTVDGEGISMTHTEFEILTYFMQNQGIVISREQLIT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQK--ATCIVTVVRAGYKFE 225


>gi|222148018|ref|YP_002548975.1| two component response regulator [Agrobacterium vitis S4]
 gi|221735006|gb|ACM35969.1| two component response regulator [Agrobacterium vitis S4]
          Length = 224

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +    + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVVEDDVNLNRQLVEALQEAGYVVDQAMDGEEGHYLGDTEPYDAVILDIGLPT--MDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    R A   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  TVLEKWRSAGRAMPVLILTARDRWSDKVSGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V G+   L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIACGPVRLDTKSSKVTVSGKALKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKI----GLDMIETVRGLGYRI 216


>gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
 gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
          Length = 222

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 104/224 (46%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A ++D        +G +++  N  +  E +Q     +   I   ++       
Sbjct: 5   ILVIEDDASIQDLITEFLSAEGYNVDAAN--DGIEGIQKFKENNYDLIILDIMMPNLDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + ++IR  S VP+I ++        L  F+   DD + KP     ++ RV AI RR   
Sbjct: 63  GVCKMIRKTSSVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAILRRSNK 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +S+N      +++  D    E+ G+V  L  +E  IL+ L+    + + +  +  +I+G
Sbjct: 123 TISDNFITFEKLKLNLDTYSAEIDGDVIELTLKEFNILKELIEKYPQVITRESLLDSIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +  +V++HI  +RKK+        + + + +GY++D N
Sbjct: 183 -YDYYGDTRIVDAHIKNIRKKIT----LPYIKTVKGIGYTLDKN 221


>gi|189348833|ref|YP_001942028.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|189338971|dbj|BAG48038.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 227

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLP--GQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ +I RR + 
Sbjct: 61  TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|168186973|ref|ZP_02621608.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169295067|gb|EDS77200.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 227

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 102/225 (45%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   + D  ++    DG  ++G F + E +E L      D+  ++  L    E   
Sbjct: 6   LVVEDEISINDILVSALRSDGYIVKGVFLASEAKEAL-GLFNPDLVLLDINLPD--ENGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R I     +P+I ++    +   +   + G DD + KP H +E+L RV    RR+  
Sbjct: 63  DLCRYINKKCIIPIIMLTARNDIVDKVLGLELGADDYITKPFHIKEVLTRVKVAMRRVNK 122

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + +E   I      ++  +GR      +   L  +E  +LE+ + NR K   + ++  
Sbjct: 123 YKDSSEESFIDINNSVKINLEGRIVLKNNKEVKLKPKEYELLEFFVKNRNKVFCREELLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  FD   E   V+ H+ +LR KL +K     +D+   +GY +
Sbjct: 183 KVW-EFDYDGEIRTVDVHVRRLRSKLNDKHEASIIDTVFGVGYVM 226


>gi|163814202|ref|ZP_02205594.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
 gi|158450651|gb|EDP27646.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
          Length = 235

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 105/223 (47%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVL 61
           +++DD + ++         +G  +    + + E+ L     + ++S +   ++       
Sbjct: 17  LMVDDESRMRKLVKDFLTREGYIV--LEAGDGEQALDIFMEDKNISLVILDVMMPKMDGW 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + IR  SQVP+I ++     +  L  F+ GVD+ + KP   + ++ARVAAI RR   
Sbjct: 75  ETLKEIRKFSQVPVIMLTAKADERDELQGFNLGVDEYITKPFSPKILVARVAAILRRTSD 134

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S  R   G I +        + G+   L  +E  +L+Y + NRG  +++ +I + ++ 
Sbjct: 135 AASEERLSAGGIDMDLSAHIVTIDGKPVELSFKEFELLQYFIVNRGVALSREKILNNVWN 194

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++H+ KLR K+  K   D + +   +GY  + 
Sbjct: 195 -YDYYGDARTIDTHVKKLRSKMGAKG--DYIKTIWGVGYRFEV 234


>gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2]
 gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2]
 gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7]
          Length = 236

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +   ++   + E    L    + ++  ++  +       +
Sbjct: 6   ILIADDEKEIRNLLKKYLERELYKVDVAVNGEEALRLFDKNQYNLLILDLMMPKV--DGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  + +P++ ++        +     G DD + KP    E++ARV ++ RR   
Sbjct: 64  EVCRRLRNKTNIPILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRRFLI 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +     +   + +        + GE  PL  +E  +L++L A+  +   KTQ+
Sbjct: 124 LGSDGESLEKTSIKYKDLTIDLKKYIIVIGGEEVPLTAKEFELLKFLAAHNEQVFTKTQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++   D   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 184 FRNVW-ESDYIEDDNTVMVHIRKLRKKIEVDPSNPQFIQTVWGIGYKF 230


>gi|91781372|ref|YP_556579.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91694032|gb|ABE37229.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 224

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A   +  +    + G  ++   +      L +  R D+  ++  +        
Sbjct: 3   ILVIEDEAKTGEYLLNGLTEAGYVVDVAANGIDGLHLANEMRYDLILLDVMMPE--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + + A    P++ +S   +L+  L   D G DD + KP    E+LAR+  I RR + 
Sbjct: 61  SVMKKLGARLDTPVLFLSARGTLEDRLKGLDLGADDYLVKPFSFAELLARIRIILRRGQP 120

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R E G + +    R  E  G    L  +E  +L + + ++G+ +++  I S ++ 
Sbjct: 121 QKQEERLEVGDLHIDVPKRRVERGGTRITLTNKEFNLLLFFVQHQGQVLSRALIASRVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVV+  + +LR+K+        + +   +GY  +
Sbjct: 181 M-NFDSDSNVVDVAVRRLRQKIDEPFEVRLIHTVHGVGYRCE 221


>gi|320527693|ref|ZP_08028865.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320131936|gb|EFW24494.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 222

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 18/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            +++DD A +++        +   + GF + E E  L +  +      D   ++  +   
Sbjct: 4   ILIVDDEANIRE-----VVREYCEINGFETEEAENGLVAIEKVKNTHFDCVILDVMMPV- 57

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                   + I++  QVP+I +S        L  F+ GVDD V KP   +E++AR+  + 
Sbjct: 58  -LDGFSTCKQIKSIDQVPVIMLSARQEEYDKLFGFELGVDDYVTKPFSPKELIARIKVVL 116

Query: 117 RRLKVSNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            R K +   ++      +++   GR   V GE  PL  +E  +L YL  +    +++  +
Sbjct: 117 ERGKKTQANSDVMIFKGLQIDVLGRVVTVDGEKAPLTPKEIDLLLYLATHPNVALSRETL 176

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++  +D   ++  V++HI  LR  L      D + + R +GY  +
Sbjct: 177 LVEVWN-YDYFGDDRTVDTHIKMLRHNLGPY--RDFITTVRGMGYKFE 221


>gi|260437804|ref|ZP_05791620.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292809828|gb|EFF69033.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 229

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            ++  +  E  E +       +  ++  L   G+   
Sbjct: 4   ILIVEDEISIAELEKDYLELSDYEVDIASDGETGESMALKGDYVLCILDVMLP--GKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR    +P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKAIRKEKNIPIIMVSAKRDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYDR 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   +++    R   V  E      +E  +L +L +N  K  +K ++F
Sbjct: 122 LVASTVPQNDVLEIRGLKIDKTARRVFVNNEEKVFTTKEFDLLLFLASNPNKVFSKDELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 RNIWDM-ESIGDIATVTVHIKKIREKIEYDTSKPQYIETIWGVGYRF 227


>gi|260462374|ref|ZP_05810582.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031868|gb|EEW33136.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 241

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D     F + G +       E    L  +   DV  I+  +  +    L
Sbjct: 20  ILVIEDDREAADYLQKAFNEAGHTAHVAGDGETGFALADTGDYDVMVIDRMMPRR--DGL 77

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +R+     P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 78  SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 137

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +               L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 138 AKEAETVYRVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY +
Sbjct: 198 D-YHFDPQTNVIDVHVSRLRGKIEKGFDKPILHTVRGAGYML 238


>gi|323143009|ref|ZP_08077715.1| DNA-binding response regulator [Succinatimonas hippei YIT 12066]
 gi|322417203|gb|EFY07831.1| DNA-binding response regulator [Succinatimonas hippei YIT 12066]
          Length = 221

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I      G+  EGF   +       +   D+  ++  L       
Sbjct: 1   MIYCVEDDTNIREIEIYTLKSLGLEAEGFEDGKAFFTALENNVPDLVILDVMLPD--LDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ + ++       +P+I  +   +    +   D G DD + KP    E+ ARV A+ R
Sbjct: 59  IEILKRLKSNHKTRDLPVIMATARGAEFEKVQALDIGADDYLAKPFSMIEMAARVKAVLR 118

Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R  K +++      +++  + R   V      L  +E  +L  L+ + G+  ++ Q+   
Sbjct: 119 RCHKDTSSVITVDKLKINEESRTISVNDIEVDLTYKEFELLLLLVKHEGRVYSREQLLDI 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           ++G  D   E   V+ HI  LR+KL   +  D  + + R +GY  ++
Sbjct: 179 VWGT-DYDGESRTVDVHIRTLRQKL---MSMDYIIKTVRGIGYKAEF 221


>gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 231

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 98/222 (44%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D         G  +   +S           R  +  ++  L     +  E
Sbjct: 9   LVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQVRQFRPHLLLLDVMLPD--MEGFE 66

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R + A  ++VP++ ++   +    +     G DD V KP    E++AR+  I RR   
Sbjct: 67  VARRLGAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRRTGM 126

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  ++R     + +  D R+    G    L   E R+L YLM N  + + + Q+   ++
Sbjct: 127 AEPESSRLVFDDLELDEDTREVTRAGAYVELTATEYRLLRYLMLNPRRVLTRAQLLEHVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   +  V+E+++S +RKKL +  G   + + R +GY++
Sbjct: 187 -SYDFGGDARVLETYVSYVRKKL-DAHGPPLIQTVRGVGYAL 226


>gi|126668450|ref|ZP_01739406.1| DNA-binding response regulator [Marinobacter sp. ELB17]
 gi|126627067|gb|EAZ97708.1| DNA-binding response regulator [Marinobacter sp. ELB17]
          Length = 221

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       +DG +++   SL F E    +   ++  ++  L        +
Sbjct: 4   LLVEDTTGLGEAVQDQISEDGHAVDWVQSLAFAETSVKTTPYNLILLDLMLPD--GHGFD 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             + +RA     P+I ++    +   +   ++G DD + KP    E+ ARVAA+ RR + 
Sbjct: 62  FLKKLRATGDTTPVIILTARDQVSDRITGLNAGADDYLVKPFDLSELSARVAAVARRYRG 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N     G + V    R  +  G+   L  RE  + E  +   G  +++ Q+   +Y  
Sbjct: 122 NPNPLVRVGDLEVDLADRRIDRNGQPVELTAREWALFEGFLQRPGILLSRAQLEDRLY-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           F   +E N +E +IS++RKKL    G D + + R +GY ++ N
Sbjct: 181 FGAEIESNTIEVYISRMRKKL----GHDAIVTVRGMGYRLEPN 219


>gi|83748410|ref|ZP_00945433.1| CzcR [Ralstonia solanacearum UW551]
 gi|83724926|gb|EAP72081.1| CzcR [Ralstonia solanacearum UW551]
          Length = 248

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G   +   S     +       D+  ++  L   G    
Sbjct: 27  LLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLP--GMDGW 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++ R +R     P++ ++    L   L   + G DD + KP    E++ARV  I RR   
Sbjct: 85  QVIRELRRRKATPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILRRGPM 144

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +   + + +  R     G+   L  +E  +L  L    G+ ++++ I S ++ +
Sbjct: 145 RESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQVWDV 204

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 205 -NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLD 244


>gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 246

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 91/238 (38%), Gaps = 23/238 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V++        +G  +           + +  + D+  ++  +       LE
Sbjct: 4   LVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARDQPDIVVLDVMMPR--MDGLE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
             R +RA    VP++ ++    L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  TCRRLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRSTL 121

Query: 120 -----------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
                                       + +    R    +G    L + E  +LE  + 
Sbjct: 122 VTRAGVGHGPAHGAEPGHGVPAALSYAGVALDPASRQVLREGRELTLTKTEFELLELFLT 181

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  + ++++ I   ++G +D     N +E  +S LR+KL        + + R +GY +
Sbjct: 182 HPRQVLSRSMIMEKVWG-YDFGPSSNSLEVFVSYLRRKLEAGGEPRLLHTVRGVGYVL 238


>gi|257126795|ref|YP_003164909.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050734|gb|ACV39918.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 226

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 12/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--AREDVSAIEAFLIGKGEK 59
            ++I+D   +          +G  +  F + + +E L  +     D+  ++  L      
Sbjct: 5   ILVIEDDPKISRLLEIELKFEGFDV--FFAYDGKEGLNMAKYGSYDIILLDVMLP--KMS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ + IR  SQVP+I ++    +   +  FD G DD + KP  + E+LAR+ A+ RR 
Sbjct: 61  GMEVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRT 120

Query: 120 K---VSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K   V     E   + +     +        +  L +RE  +L++L+ N+G  +++ +I 
Sbjct: 121 KKSVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
             ++G FD    +N+++ +I  LR K+        + + R +G
Sbjct: 181 EEVWG-FDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIG 222


>gi|15803567|ref|NP_289600.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 EDL933]
 gi|12517595|gb|AAG58159.1|AE005532_3 quorum sensing Escherichia coli regulator B [Escherichia coli
           O157:H7 str. EDL933]
          Length = 219

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVXGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|303240403|ref|ZP_07326921.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592130|gb|EFL61860.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +    +   +G  +E             S R D+  ++  L        
Sbjct: 6   ILIIDDELSILNLVSMVLKREGYEVEQARDGNTGLRFFESFRPDLIILDIMLPD--INGN 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ +++R++S +P++ ++    +   +   + G DD + KP  +RE+L RV A+ RR   
Sbjct: 64  EVCKMVRSNSSIPIMMLTAKSDIVDKIVGLELGADDYLTKPFDNRELLVRVKALLRRTGL 123

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+ +      I +    +      +   L   E ++LE  M N  +   +  + + ++
Sbjct: 124 KDVNPDILSYSDIVINLKEKVLLKNNKRISLTPIEYQLLELFMKNPSRVFTREDLLTRVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G +D   +   V+  I++LRKK+ +       + +    GY  
Sbjct: 184 G-YDYYGDSRTVDISITRLRKKIEDDSKNPKYIVTAYGFGYCF 225


>gi|170757056|ref|YP_001781900.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122268|gb|ACA46104.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 234

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G  +E  F+ LE  E  +      +  ++  +       
Sbjct: 6   ILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFK-GENYHMVIMDIMMPV--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R IR  S+VP+I +S        +     G DD + KP    E++ARV    RR  
Sbjct: 63  IESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAI 122

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N           E G ++   +       G+   L  +E +IL+    N  +   K Q
Sbjct: 123 YYNETKSIKENKIYEYGDVKFDMNNYIVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I+ +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 183 IYDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|148557691|ref|YP_001265273.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502881|gb|ABQ71135.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 230

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D       + G  ++  ++     +  +    D   ++  L   G   +
Sbjct: 5   ILLVEDDAATADFVATGLSEHGFVVDRADNGRDGLFHATDGSYDCVILDRMLP--GMDGM 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   IRA   + P+I +S   + +  +   + G DD + KP    E+LARV  + R  +
Sbjct: 63  AVLGAIRAAGIETPVIILSALGAAEDRVKGLEGGSDDYLTKPFAFAELLARVRLLIRHGQ 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    R     + +    R     G+   L  RE R+LE+L+ +  + V +T +  
Sbjct: 123 GRSAAAPETRLACDDLEMDLLSRKVRRGGQPIELQPREFRLLEFLLRHAEQVVTRTMLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +      NV++ H+S+LRKK+        + + R  GY +
Sbjct: 183 GVWD-YHFDPGTNVIDVHVSRLRKKIDEGQARPLLHTVRGSGYRL 226


>gi|93007040|ref|YP_581477.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394718|gb|ABE75993.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 234

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +++  +      G  SL+  +  E  + +    R  +  ++  L G  +  
Sbjct: 6   ILIVEDEDAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDH-RPALILLDWMLPG-DKSG 63

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           ++  R++++ +   ++P+I ++      + +   D+G DD + KP   RE+++R+ A+ R
Sbjct: 64  IDFCRMLKSDTLLAEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLR 123

Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R      +     G + + +  +   V  ++  +   E R+L + M++  +   + Q+  
Sbjct: 124 RSNALSGDKPINIGRLTLDAKSQRFMVGDDIIDMGPTEYRLLAFFMSHPERAYTRAQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  +  +E+  ++ H+ +LR  LR       + + R  GY  
Sbjct: 184 QVWGG-NVYIEDRTIDVHVKRLRTLLRPHDCDTLIQTVRGTGYRF 227


>gi|323439955|gb|EGA97670.1| two-component response regulator [Staphylococcus aureus O11]
          Length = 224

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++  +   G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMM--DGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN+    G + +     + +V  +   LP +E ++L  L     +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLATRPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYGGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|283781006|ref|YP_003371761.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
 gi|283439459|gb|ADB17901.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
          Length = 223

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++         + G   +   + +      S+ + D   ++  L       +
Sbjct: 3   LLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDT--TGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR      P++ ++   S+   +   +SG DD + KP    E+LAR+ AI RR K
Sbjct: 61  EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +++ + GP+ +    R          L   E  +LE+LM   G+ V +  +   ++ 
Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E V  NVVE HI++LR K+        + + R  GY +
Sbjct: 181 SDWEGV-TNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVL 220


>gi|297588278|ref|ZP_06946921.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573651|gb|EFH92372.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 233

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++         +G  +    S E    L    + DV+ ++  L   G    E
Sbjct: 10  LLVEDEDNIRQFTKINLAREGFEILEAESGEKGVELAELNKPDVAVLDIMLP--GIDGFE 67

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + +I+R     + +I ++        ++  + G DD + KP + RE++ R+ ++ RR   
Sbjct: 68  VCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSPQ 127

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++   E    ++    R     G+   L   E  I++ LM N GK + + ++    +
Sbjct: 128 KQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELNIIKLLMQNPGKAITRDELMDKAW 187

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G  D   +  +V+ ++ +LR K+  +      + +   +GY  +
Sbjct: 188 GE-DFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGYRWE 230


>gi|146313065|ref|YP_001178139.1| DNA-binding transcriptional regulator QseB [Enterobacter sp. 638]
 gi|145319941|gb|ABP62088.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 219

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L   G   L
Sbjct: 3   ILLVEDDKLIGDGLKAGLTKMGFSVDWFTDGGTGKTALYSAPYDAVVLDLTLP--GMDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   +  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGRSEPVLILTARDALYQRVEGLRLGADDYLCKPFALVEVAARLEALVRRSH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + +       ++ GE  PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQTRSELRHGNVTLDPVSLVAKLDGETLPLKPKEFALLELLMRNAGRVLPRKNIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL +      + +   +GY++
Sbjct: 180 TWDDDVSSNAVEVHVHHLRRKLGSHF----IRTVHGIGYTL 216


>gi|56420225|ref|YP_147543.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380067|dbj|BAD75975.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 226

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D        +G   ++  +  E  ++L+     D+  ++  +       
Sbjct: 4   LLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRH-HADLVLLDVMMPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R IR+ S VP++ ++        +     G DD V KP    E+LAR+ A+ RR  
Sbjct: 61  WETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRRTA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      +    +      + +   L  +E  IL  L+ +  +  ++ QI ++++G 
Sbjct: 121 GGRSAIRAAGLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
           +    EE  V+SH+  +R+KLR       + + +   +GY  +
Sbjct: 180 YLADTEERTVDSHMKNIREKLRKAGFPADEYLQTVWGVGYKWE 222


>gi|322419001|ref|YP_004198224.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125388|gb|ADW12948.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +        +G  +               A+ D+  ++  L   G    E
Sbjct: 5   LIIEDETDLAELIAYHLEKEGFRILVAGDGSAGLQEARKAKPDLILLDLMLP--GMMGTE 62

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + RI++     + +P+I ++        +  F+ G DD V KP   RE++ RV A+ RR 
Sbjct: 63  VCRILKGSDQTASIPIIMLTAKGEEIDRVVGFEVGADDYVVKPFSTRELMLRVRAVLRRS 122

Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +      G + + ++     V GE   L   E ++L  L    G+  ++  +   
Sbjct: 123 SEQTPKAATITIGELVIDTERHLVSVCGEEVLLTSTEYKLLMNLAERTGRVQSRELLLQN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +    +   V++H+++LR KL +    + + + R  GY I+
Sbjct: 183 VWG-YSYVGDTRTVDTHLTRLRTKLGSAG--ELIKTVRGFGYKIE 224


>gi|283851685|ref|ZP_06368964.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283573015|gb|EFC20996.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 227

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 95/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G + E   + +  E L  + R   + I   L+  G    
Sbjct: 6   ILIVEDDEDIVELLAFNLQSAGFATE--TAKDGYEALTKARRTPPAGIILDLMLPGLDGF 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + ++   +    P+I ++        +   + G DD V KP   RE++ R+ A+ +R
Sbjct: 64  EVCKELKRDPKTAGAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKR 123

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +      + V        + GE   L   E R+L  L  + G+ + + ++ +
Sbjct: 124 HAPETEKRQVLSRDGLSVDLGAHRVTLDGEEVALTATEFRLLAELFQSTGRVLTRDRLLN 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++G ++       V++H+ +LR+KL        +++ R +GY  
Sbjct: 184 SVWG-YEFEGYARTVDTHVRRLRQKLGA--CSRMIETVRGVGYRF 225


>gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 244

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++         G  +    S           R D+  ++  L        
Sbjct: 19  LLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRHRPDLIVLDVMLPDF--DGF 76

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R+  +  P++ ++   ++   +     G DD V KP    E++AR+ AI RR +
Sbjct: 77  AVVRRLRSGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRRAR 136

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + R     I +  D  +    G+   L   E ++L Y MAN G+ ++K QI   
Sbjct: 137 GGAAEPSPRMVFADIELDEDSHEVWRAGKPISLSPTEFKLLRYFMANAGRVLSKAQILDH 196

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   +  +VES++S LR+K+ N      + + R +GY +
Sbjct: 197 VWN-YDFRGDAGIVESYVSALRRKVDN-TEPRLIHTLRGVGYVL 238


>gi|302333994|gb|ADL24187.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 224

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++  +   G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMM--DGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN+    G + +     + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 123 SNSEKTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|271499217|ref|YP_003332242.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342772|gb|ACZ75537.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 240

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 99/231 (42%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +   + +     L    ++   A+   L+  G   L
Sbjct: 7   ILLVEDDHDIATLLRLNLQDEGYQIS--HEVNGAHALVQLEKQVWDAVILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R IR  +  +P+I IS   S    +   + G DD + KP    E++ARV A++RR  
Sbjct: 65  EICRRIRQMTHYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELVARVKALFRRQE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +++         + +    R+  + G+   L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNIRMEAGSVSLHGLDIDPLAREVSLHGKPIELTPREFDLLYWFARHPGEVFSRLTL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
              ++G +     E+ V +HI++LR K+ RN    + + +    GY    N
Sbjct: 185 LDRVWG-YQHEGYEHTVNTHINRLRIKIERNPAEPEIILTVWGKGYKFATN 234


>gi|254456179|ref|ZP_05069608.1| phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083181|gb|EDZ60607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Pelagibacter sp. HTCC7211]
          Length = 227

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELP 64
           +D   +          +G  +    + E         + D+  ++  L    G  + +  
Sbjct: 9   EDETSIVTLLKYNLEKEGHKVSFCENGEEALKQIKDKQPDLILMDWMLPDLSGVDICKNL 68

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
           +  +  + +P+I ++     +  L  FD+G DD V KP   +E+ AR+ ++ RR K  + 
Sbjct: 69  KKDKKFNDIPIIMLTAKGEEEDKLKAFDTGADDYVTKPFSQKELNARIKSLLRRSKPQSS 128

Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  E   +++    +          L   E ++L++ + N  +  ++ Q+ + ++G  +
Sbjct: 129 VDVVEFTDLKIDRITKRVYRNNTEISLGPTEFKLLDFFIKNPKRVYSREQLLNNVWGE-N 187

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             VE   V+ HI +LR+ +  +     + + R  GYS++
Sbjct: 188 IYVESRTVDVHIRRLRQAINIENTKPLIRTVRSAGYSLE 226


>gi|187926390|ref|YP_001892735.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|241665877|ref|YP_002984236.1| transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728144|gb|ACD29308.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240867904|gb|ACS65564.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 219

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++I+D   +               E                 ++  ++  L   G+  
Sbjct: 1   MILIIEDEPKLAALMTDYLRAAHYETEWLADGTHAAQRIRETAPELVLLDLMLP--GKDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S+VP++ ++        L   + G DD V KP   RE++AR+  I RR++
Sbjct: 59  LEICREVRAFSEVPIVMVTARVEEIDRLLGLELGADDYVCKPFSPRELVARIKTILRRVQ 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E+  + + +      ++G+   L   E R+L  L    G+ ++++ +   IY  
Sbjct: 119 RGGGVPESA-LHIDAAAYAATLRGQRLDLTPVEFRLLAALAGAPGRILSRSNLLEQIYDD 177

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
               V +  V++HI  LR+K+     G + + S   +GY +D
Sbjct: 178 H-RIVTDRTVDTHIKNLRRKMEQVSPGTEMIHSVYGVGYRLD 218


>gi|72162895|ref|YP_290552.1| response regulator receiver [Thermobifida fusca YX]
 gi|71916627|gb|AAZ56529.1| response regulator receiver [Thermobifida fusca YX]
          Length = 225

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +  +         + D+  ++  L   G   ++
Sbjct: 6   LVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLMLP--GADGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRQIRAESGVPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARIRARLRRTEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    + G I +   G       +V  L   E  +L  L     +   +  +   ++G +
Sbjct: 124 APEILQIGDITIDVAGHSVRRGDQVINLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221


>gi|332705648|ref|ZP_08425724.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332355440|gb|EGJ34904.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 656

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     A        ++     +    L    + D+  ++  L       +
Sbjct: 3   ILLVEDDEGIAKVVTAALASQHYQVDLATDGDEGIALAEILKYDLILLDWMLP--KLTGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +R A  + P+I ++   +    ++  D+G DD + KP+   E+LAR+ A+ RR  
Sbjct: 61  DLCKQLRNARDRTPIILLTAQDTSTNKVEALDAGADDYLVKPLDIPELLARIRAVLRRSS 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E G + +           E+  L  +E  ++E  + N  +  +++ +   ++ 
Sbjct: 121 TPLLPVLEWGLLHLDPSNCQVSYDQELLHLTPKEYGLVELFLRNPHRIFSQSFLLDNLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            F+E   EN V +HI  LR+KL+      D +++   LGY +
Sbjct: 180 SFEEPPTENAVRAHIKSLRRKLKQAGAKNDLIETVYGLGYRL 221



 Score = 86.9 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +    G  L   N  +           D+  ++  +       +
Sbjct: 525 LLIVDDDPQILDQLRTVLEPWGFQLTLLNDPQQFWETIEQCTPDLLILDVQMPEF--SGI 582

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-----A 113
           +L +++R     +++P++ +S     +T    F +G DD V KPI   E+LARV      
Sbjct: 583 DLCQVVRNDPRWAELPVLFLSAAQDAETVQQVFMAGADDYVQKPIRAPELLARVLNRIER 642

Query: 114 AIYR-RLKVSNNRA 126
           +  R R+    NR 
Sbjct: 643 SQLRLRMVTQKNRI 656



 Score = 43.4 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 23/67 (34%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +  G  +      + +E    +       +  R DV  ++          L
Sbjct: 400 LLIVDDDLTLAQGLASELAAWKMEVEVAADISQARKAIARNRPDVVLLDLCFPDSAGNGL 459

Query: 62  ELPRIIR 68
           EL   ++
Sbjct: 460 ELLAELK 466


>gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++        ++  +++     E   +       D+  ++  L       +
Sbjct: 3   ILIVEDEAKIRHFLRQGLLEESYAVDTAVDGEEALYKLDINEYDLVLLDIMLPKV--NGI 60

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R  S  P ++ ++    +   +   D+G DD + KP    E+ AR+ A++RR K
Sbjct: 61  AVCKALREKSSSPPILLLTAKDGVADKVLGLDAGADDYLTKPFSFDELTARIRALFRRGK 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++      G + +    +  +   +   L  RE  +LEY + N    + KTQI   ++ 
Sbjct: 121 KADATLLTIGDLSLDPATKTVKRGEQSIVLTTREYALLEYFLRNPNILLTKTQILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++     N+VE+++  LRKK++      + + + R  GY +
Sbjct: 181 -YNFEGLSNIVETYVKYLRKKIKTAPNAPELIHTMRGSGYIL 221


>gi|255524543|ref|ZP_05391498.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186042|ref|ZP_06854447.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255511839|gb|EET88124.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049310|gb|EFG88739.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 228

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 93/226 (41%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G   ++ F+  E  E  + +   ++  ++  L       
Sbjct: 6   ILIVEDDEEINNLIFHTLKKEGYDIVQFFDGKEAVE--KYNNSFNLVILDLMLPYV--DG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ R IR  +  P+I +S        +     G DD + KP   RE++ARV A  RR  
Sbjct: 62  IEVLRQIRTVNNAPVIILSAMDEETDRIIGLGMGADDYMVKPFSTRELVARVKAQLRRYV 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N+      +++ +       +     L   E  +L++ + N  +   K QIF+
Sbjct: 122 YYNEDKHNSLLTYDKLKLDTSNYKVFKENRELNLTPIEFELLKFFLENPDRVFTKAQIFN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++   +   ++N V  HI +LR K+ +       + +   +GY +
Sbjct: 182 NVW-KNEYVNDDNTVMVHIKRLRNKIEDNPNNPKYIITVWGIGYKL 226


>gi|229061164|ref|ZP_04198514.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228718035|gb|EEL69675.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 225

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R   +
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 LGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFE 224


>gi|256833021|ref|YP_003161748.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686552|gb|ACV09445.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 232

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E            +  + D   ++  L   G   L
Sbjct: 4   ILIVEDEPAIATAIAQRLTAEGWRTEVARDGLAAVDAAARLQPDAVVLDVMLP--GIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R I+A   VP++ ++        L     G DD + KP   RE++AR+ A+ RR+  
Sbjct: 62  EVCRRIQADRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARLKALLRRVDR 121

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +          ++   G + V    R      E   L   E  +L  L +     + + +
Sbjct: 122 AAQASVSPAEESKITVGDVVVDRQQRRVYRGVEEIHLTPTEFDLLVMLASAPKTVLTRER 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + ++   D +     V+SHI  LR+KL    G D + +   +GY+ +
Sbjct: 182 LLAEVWDWVDASG-TRTVDSHIKALRRKL----GADLIRTVHGVGYAFE 225


>gi|156935705|ref|YP_001439621.1| DNA-binding transcriptional regulator BasR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533959|gb|ABU78785.1| hypothetical protein ESA_03574 [Cronobacter sakazakii ATCC BAA-894]
          Length = 220

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G     G++G +L+   +    + L  S    +  ++  L  K    L
Sbjct: 3   LLIVEDDLLLQEGLALALGNEGYALDCAANAAEGDALLQSGEYSLIILDLGLPDKDGATL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R+    P++ ++   +L+  +   D+G DD + KP    E+ AR  A+ RR + 
Sbjct: 63  -LSQWRRSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  +   I +    +   +QG    +  +E  +L  LM   G+ V +  +   IY  
Sbjct: 122 HSDNLLQHDDITLNLQTQQVLLQGMPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYSW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+KL    G   + + R +GY ++
Sbjct: 182 QDD-PSSNTLEVHIHNLRRKL----GKTRIRTIRGVGYRLE 217


>gi|329927919|ref|ZP_08281947.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
           sp. HGF5]
 gi|328938138|gb|EGG34534.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
           sp. HGF5]
          Length = 228

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +    + +         +  +  ++  L   G+  +
Sbjct: 5   LLLVEDEVAMLETMKLYLEGEGFRVLAVTNGQDALECARREQPALVVLDWMLP--GKSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R  S   +I ++        +   + G DD + KP   RE+ +R+ ++ RR   
Sbjct: 63  EVCKELRQSSACGIIMVTAKSEETDKIIGLELGADDYITKPFSLRELTSRIRSVLRRTAP 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V     + G + +          GE+ PL   E +IL  L    G   ++ Q+  A  
Sbjct: 123 IQVEAPPLQRGDLLISETQCQVTRNGELIPLTPTEFKILLTLANRPGVVFSRLQLMKAAM 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              D    E  ++SH+SKLRKKL  +      + +    GY  
Sbjct: 183 D-DDFMNYERTLDSHVSKLRKKLEPDPDHMKYIQTVYGFGYRF 224


>gi|313813774|gb|EFS51488.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
          Length = 232

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 95/230 (41%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++         G  ++            S    D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPR--LDGL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R++R++ + VP++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR +
Sbjct: 63  EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +        + +    R+         L R E  +L   + N  + + ++ + 
Sbjct: 123 PEPGPDEAPEHLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
             ++G FD     N +E +I  LR+K  +      + + R +GY + + N
Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDGEARLIHTVRGVGYVLREAN 231


>gi|89893100|ref|YP_516587.1| hypothetical protein DSY0354 [Desulfitobacterium hafniense Y51]
 gi|219666356|ref|YP_002456791.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89332548|dbj|BAE82143.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536616|gb|ACL18355.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 229

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++     +  ++G      ++      + +    D+  ++  L   G    
Sbjct: 3   IMLVDDERSIQKAVEYIVRENGYQFCYVDNGLEALEVFAGEAPDLLILDVMLP--GLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR+ S VP+I +S    +      F  G DD + KP    E+  R+ A+ RR   
Sbjct: 61  AVCEKIRSFSDVPIIFLSAKGDIVDKGIGFKMGGDDYLVKPFSSMELDFRIKALLRRPHR 120

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+   + G + +  +  +    GE   L  +E  +L +L  NRG+   + Q+ 
Sbjct: 121 LEDEPNNSDEVLKIGDLELRLNEYEVYSGGEKVELTAKEFEVLAFLAKNRGQVFTREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+GL D   + N V   I ++R+K+  +      + +   +GY  
Sbjct: 181 DRIWGL-DFEGDTNTVTVFIRRIREKIEADPAKPQYILTVWGVGYKF 226


>gi|323525961|ref|YP_004228114.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323382963|gb|ADX55054.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 224

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G  ++     E  +    +     + ++  L       +
Sbjct: 3   ILLVEDDPLLGDGIRAGLRQQGFQVDWVQDGEAAQRELRAQPYAAAVLDLGLPR--MDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R +R      P++ ++   ++   +   D G DD V KP+   E+ AR+ A+ RR  
Sbjct: 61  DVLRSVRRVGVDFPILVLTARDAVPDRVRGLDMGADDYVVKPVDLEELGARLRALVRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R E   + +    R     G    L  RE  +L  LM N G+ +++ QI   +Y 
Sbjct: 121 GRPRERLEAHDVVLDPASRMVYRAGVPVTLSSREFDLLHVLMLNAGRVLSREQIEQHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + VE N VE H+ +LR KL    G D + + R +GY +
Sbjct: 180 SWGQEVESNAVEVHVHRLRSKL----GSDVIRTVRGIGYVL 216


>gi|225849099|ref|YP_002729263.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644594|gb|ACN99644.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 228

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 102/230 (44%), Gaps = 13/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +I+D   + +     F  +G  ++ F + +         + D   ++  +       
Sbjct: 3   LIYVIEDDEDINELLTYNFKKEGFEVKSFPNGKVAFEHIKEDKPDAVVLDLMMPE--IDG 60

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE  +++R     S  PLI ++   +    +   + G DD V KP   RE+LARV A+ R
Sbjct: 61  LEFCKLVRSDKEISHTPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKAVIR 120

Query: 118 RLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R K      S  + +   + +  +  +  ++G+   L   + ++L  L+   G+ +++  
Sbjct: 121 RSKSYHFPTSKPKYKFKDLEIIPEKFEVTIKGQHINLTITQFKLLLALVNAEGRVLSRDY 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           I   I+  +D+ + +  ++ HI KLR+ L +    + + + R +GY  + 
Sbjct: 181 ILENIW-KWDKDIYDRTIDVHIKKLREVLGDYG--NCIKTVRGVGYKWEC 227


>gi|77459576|ref|YP_349083.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383579|gb|ABA75092.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
          Length = 220

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +G     G +G +++             S   D++ ++  L       L
Sbjct: 3   LLLIEDDVALGEGIHQALGREGYTVDWLKDGSSALHALLSENFDLAVLDLGLPR--MDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +R + S +P++ ++   + +  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLRRLRGSGSNLPVLILTARDATEDRIAGLDAGADDYLIKPFDLAELKARLRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +     G+   L  +E ++L  L++  G+ + +  +   +YG
Sbjct: 121 GRAQMLIEHAGISLNPGTQQVSYLGQPVVLTPKEYQLLHELLSPPGRVMTRDHLTQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++E  E N +E HI  LRKK       D + + R +GY ++
Sbjct: 181 -WNEEAESNTLEVHIHHLRKK----FSTDLIRTIRGVGYLVE 217


>gi|23336525|ref|ZP_00121738.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|23465569|ref|NP_696172.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189439616|ref|YP_001954697.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|227546166|ref|ZP_03976215.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621792|ref|ZP_04664823.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|296453867|ref|YP_003661010.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|312133015|ref|YP_004000354.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481881|ref|ZP_07940908.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688823|ref|YP_004208557.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690811|ref|YP_004220381.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23326235|gb|AAN24808.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189428051|gb|ACD98199.1| Putative response regulator [Bifidobacterium longum DJO10A]
 gi|227213147|gb|EEI81019.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239514983|gb|EEQ54850.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517115|emb|CBK70731.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|296183298|gb|ADH00180.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
 gi|311774002|gb|ADQ03490.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|316916672|gb|EFV38067.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455667|dbj|BAJ66289.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460159|dbj|BAJ70779.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 240

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +              S  R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPV--MDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR++ +
Sbjct: 74  ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133

Query: 123 ---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        + G + +    R   V GE   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKLLDFGSMVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G D + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GADTIRTVHGVGYAFE 236


>gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 226

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D             + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIQWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|253730033|ref|ZP_04864198.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253734222|ref|ZP_04868387.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|297209820|ref|ZP_06926216.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300910832|ref|ZP_07128282.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304379557|ref|ZP_07362290.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|253726246|gb|EES94975.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253727917|gb|EES96646.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|296885493|gb|EFH24430.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300887812|gb|EFK83007.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304341733|gb|EFM07639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|320139067|gb|EFW30949.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142555|gb|EFW34364.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
          Length = 233

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++  +   G    +
Sbjct: 14  LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMM--DGMDGFQ 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  + 
Sbjct: 72  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 131

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN+    G + +     + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 132 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 190

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 191 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 230


>gi|145631584|ref|ZP_01787350.1| transcriptional regulatory protein [Haemophilus influenzae R3021]
 gi|144982784|gb|EDJ90310.1| transcriptional regulatory protein [Haemophilus influenzae R3021]
          Length = 221

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L       L
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFIDGKTGMAALTSAPYDAVVLDLTLP--KLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           E+ +  R+ H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A+  RR 
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E   +++  + R   +  +   L  RE ++LE LM N+ + ++++ I   +  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKL-S 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 216


>gi|159900669|ref|YP_001546916.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893708|gb|ABX06788.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 232

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V D   + F  +G ++    +   E+ L     E    +   +   G    
Sbjct: 4   ILIVDDEPSVVDVVRSRFEREGFAVG--ETGSGEDALVRLRNETYDLLILDIGLPGIDGF 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +RA   + P+I ++        +   + G DD V KP   RE++ARV A+ RR  
Sbjct: 62  GVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTA 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  ++ +    +  +++ +  R    +     L  +E  +L YL ++ G+   +  
Sbjct: 122 EASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREV 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   ++G +DE V+   V+ HI +LR KL       + + ++  +GY  
Sbjct: 182 LLGQVWG-YDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229


>gi|291522141|emb|CBK80434.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 232

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +    + L    + D+      ++      +
Sbjct: 7   ILVVDDDKEIANLVEIYLSSTGYKIH--KAYNAVDGLALLQKYDIKLAIIDVMMPQIDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR    +P+I +S   +    +     G DD + KP +  E+LARV +  RR   
Sbjct: 65  EMCRRIRTCRNIPIIILSAKSADVDKILGLSVGADDYMIKPFNPMELLARVKSQLRRYLE 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +N  E   + + +      V G    L   E  IL+ L ++ G+  +  +I+
Sbjct: 125 LNPGVVPDSNMIEVQDVVIDTKKHRVTVDGRDVVLTPIEFNILQLLASHPGRVFSTDEIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++         N V  H+ +LR+K+  N      + +   +GY I+
Sbjct: 185 ENVWNEKLYEAN-NTVMVHMRRLREKVEKNPRSPQLIKTVWGVGYKIE 231


>gi|239982264|ref|ZP_04704788.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 225

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +   A    +G  ++             + + D+  ++  L   G   LE
Sbjct: 2   LVVEDDTTIVEAISARLRAEGFLVQTATDGPAAVDTAEAWQPDLLILDIMLP--GFDGLE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 60  VCRRVQAQRPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 119

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V  E   L   E  +L  L       +++ Q+ 
Sbjct: 120 ALAAATPRSGILRLGELEIDHAQRRVRVHAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 180 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 221


>gi|260890602|ref|ZP_05901865.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
 gi|260859647|gb|EEX74147.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
          Length = 226

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 103/223 (46%), Gaps = 12/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--AREDVSAIEAFLIGKGEK 59
            ++I+D   +          +G  +  F + + +E L  +     D+  ++  L      
Sbjct: 5   ILVIEDDPKISRLLEIELKFEGFDV--FFAYDGKEGLNMAKYGSYDIILLDVMLP--KMS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ + IR  SQVP+I ++    +   +  FD G DD + KP  + E+LAR+ A+ RR 
Sbjct: 61  GMEVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRT 120

Query: 120 K---VSNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K   V     E   + +     +   E    +  L +RE  +L++L+ N+G  +++ +I 
Sbjct: 121 KKSVVHKGIFEFEDLTINYSTYEVFREYGKNLIQLSKREFELLDFLVLNKGIVLSRDKIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
             ++G FD    +N+++ +I  LR K+        + + R +G
Sbjct: 181 EEVWG-FDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIG 222


>gi|255526521|ref|ZP_05393430.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187630|ref|ZP_06856024.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509771|gb|EET86102.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047587|gb|EFG87027.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 230

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEK 59
            ++ DD   +          +G ++   ++L  +E L         +  ++  +      
Sbjct: 5   ILIADDNIEIIKILKPYVEKEGFTV--VSALNGKEALDKFDVCNPQIVLLDIMMPI--ID 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ + IR  S  P+I I+        +   +SG DD + KP    E++AR+ AI RR+
Sbjct: 61  GMEVCKSIRFKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAILRRI 120

Query: 120 KVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               N      +  P+ +  +    ++ G    L ++E  +L  L ++  K V++  +  
Sbjct: 121 TPPENIKLTTIKYPPLELDIENYSIKLNGSNINLTKKEIEVLWMLSSSPNKIVSRDTLLD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +I+G+ D   +   V++HI ++R KL     ++  + +   +GY  + 
Sbjct: 181 SIWGI-DYFGDPRTVDTHIKRIRAKLALNGQYNWDIKTIWGMGYKFEV 227


>gi|295090383|emb|CBK76490.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 105/224 (46%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++   A   D G ++  +++ +  E +++  R D   +   L+       
Sbjct: 5   ILIIEDEIAIQNIVRAFLEDAGYTV--YSAGDGLEGIETFRRCDPDLVLLDLMLPKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +  I+R  S+ P+I ++      + +  FD   DD + KP     +L R+ A+ RR + 
Sbjct: 63  AVCEILRKESRTPIIMLTARDDDASQMKGFDVLADDYIIKPFSMPLVLRRIEAVLRRTEQ 122

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        I + ++  +  V  +   L  RE  IL+ L+ N GK  ++  +  ++
Sbjct: 123 GTEEEPSVIRYKEITLDAENYEVLVGTDEVSLTSREFEILKLLLENPGKVFSRESLLDSV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   ++ +V +HI  +RKKL    G D +++ R +GY I+
Sbjct: 183 WG-YEYYGDQKIVNTHIKNIRKKL----GVDYIETIRGVGYKIE 221


>gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator
           [Janthinobacterium sp. Marseille]
 gi|151280237|gb|ABR88647.1| phosphate regulon two-component response regulator
           [Janthinobacterium sp. Marseille]
          Length = 229

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 104/223 (46%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
            ++++D   + +         G ++    N+ +  +++Q      +  ++  L  + G +
Sbjct: 8   ILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWDFIQ-QRLPQLILLDWMLPDQSGLR 66

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L   R  R  +++P+I ++     +  +   D+G DD V KP   RE+ AR+ A+ RR 
Sbjct: 67  LLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRK 126

Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +++     G I +        +  E   +   E ++L++ +A+  +  +++Q+   +
Sbjct: 127 TPEHSQTLMTAGNISLDPVSCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LRK L++      + + R +GY +
Sbjct: 187 WGDH-VVIEERTVDVHVLRLRKALKDA--EHLIKTVRSVGYML 226


>gi|325284496|ref|YP_004257035.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324316670|gb|ADY27781.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +G ++    + +     +   R D++ ++  L   G   +
Sbjct: 4   ILIVDDDPAILEILRAYLKAEGHTV--LEACDGYSAREQLPRADLAILDWMLP--GVSGV 59

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  RA    +P++ ++     +  L   D GVDD V KP   RE++ARV A+ RR+ 
Sbjct: 60  DLAREARASGLTLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVVARVRALLRRVG 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V       G +R+   G    + GE   L + E  +L  L  + G    + ++   ++G 
Sbjct: 120 V-QEEIAVGDLRIDLRGHSASLSGERLELSKLEFDLLSALAQHPGMAWPRERLLERVWG- 177

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            D    E VV+ HI+ LRKKL +       +++ R +GY  
Sbjct: 178 SDFPGTERVVDVHITGLRKKLGDTSDTPRFIETVRGVGYRF 218


>gi|146329260|ref|YP_001209793.1| two-component copper resistance response regulator [Dichelobacter
           nodosus VCS1703A]
 gi|146232730|gb|ABQ13708.1| two-component copper resistance response regulator [Dichelobacter
           nodosus VCS1703A]
          Length = 229

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G  ++  ++      +    + DV  ++  L       L
Sbjct: 3   ILVIEDDQDAAAYIAKGLTESGYVVDTAHTGSKGLMIAQKGQYDVLIVDRMLPE--LDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA     P++ +S    +   ++   +G DD + KP    E+LARV ++ RR  
Sbjct: 61  SLIQQLRAQGASTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQSLARRRN 120

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E   + +    R     G+   L  RE R+LEYLM+N G+ V +T +   +
Sbjct: 121 TDVHDQMVLEIADLHLDRLRRKVTRAGKKINLQPREFRLLEYLMSNSGQVVTRTMLLEKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  ++   + NV++ HIS+LR K+        + ++R  GYS+
Sbjct: 181 W-EYNFDPQTNVIDVHISRLRSKIDKDFNPPLIHTERGAGYSM 222


>gi|297589562|ref|ZP_06948203.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|297578073|gb|EFH96786.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312437222|gb|ADQ76293.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 233

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 101/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +  + F     E  L+   ++ V      ++  G    +
Sbjct: 14  LVVDDDPRILNYIASHLQTEHI--DAFTQPSGEAALKLLEKQRVDIAVVDIMMDGMDGFQ 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  + 
Sbjct: 72  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 131

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN+    G + +     + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 132 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 190

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 191 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 230


>gi|218699471|ref|YP_002407100.1| transcriptional regulatory protein YedW [Escherichia coli IAI39]
 gi|218369457|emb|CAR17222.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli IAI39]
          Length = 223

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHYT 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +++ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + N V+  I +LR K+ +      + + R +GYS 
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218


>gi|110597758|ref|ZP_01386042.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340665|gb|EAT59145.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 222

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 95/218 (43%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++  +  +    +  +   D+  I+  +       +
Sbjct: 3   LLIIEDEPGIARFLKDGLEEEYFAVDLAHDGKTGLDMAMTNEYDLLIIDWMIPA--LSGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   S VP++ ++   +L+  +   D+G +D + KP    E+LAR+    R   
Sbjct: 61  EVCRQVRKGGSTVPILFLTAKDTLEDVVFGLDAGANDYIKKPFEFEELLARIRVQLRTTN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +               L  +E  +LEYL+ N+ +   +++I   ++ +
Sbjct: 121 RVEESLSVGSLSINPVTHQVFSGSTELTLTPKEFALLEYLIRNKDRVCTRSRIIEHVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                + +V++ +I+ LR+KL +    + + + R +GY
Sbjct: 181 H-FDSDTSVIDVYITFLRRKLESAGCGNIIQTIRGVGY 217


>gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 239

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G  +   ++        +  + D+  ++  L        
Sbjct: 13  LLVVDDEPNIRDLLATSLRFAGFEVFTASTGNEAIREATENQPDLVVLDVMLPD--MDGF 70

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   +  P++ ++     Q  +     G DD V KP    E++AR+ A+ RR  
Sbjct: 71  TVTRRLRDRGEKYPILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 130

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      +R+  D  +         L   E ++L YLM N G+ V+KTQI  
Sbjct: 131 GGAETTVDSALVVADLRLDEDSHEVHRGDVNIELSPTEFKLLRYLMLNAGRVVSKTQILD 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D + E  +VES+IS LR+K+ + +G   + +KR +GY +
Sbjct: 191 HVWD-YDWSGEVGIVESYISYLRRKI-DVIGEPMIHTKRGIGYVL 233


>gi|161501958|ref|YP_262771.2| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf-5]
          Length = 226

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  I     +G +    +        Q ++  D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPADLIILDIGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  ETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMVP 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                A      +  +      +G+   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 122 RVAPEAVAALFVIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLDAL-GV 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             +   E  ++SHI  LR KLR      +P+ + R LGYS
Sbjct: 181 MADVGYERNIDSHIKSLRAKLRLVAAQAEPIQTHRGLGYS 220


>gi|154687900|ref|YP_001423061.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154353751|gb|ABS75830.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 232

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G  +    + E    + ++ + +V  ++  L       +
Sbjct: 5   ILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILNTQKFEVILLDLMLP--KIDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R+IR+ S VP++ +S              G DD ++KP    E++AR+ A  RR + 
Sbjct: 63  ECLRMIRSKSMVPVLIMSAKDEDVDKALGLGLGADDYISKPFSMLEVIARIKATIRRERH 122

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        + G + V   G   +   E   L  +E  IL+  ++N  +   K+Q+
Sbjct: 123 YKSSLSSKEEKIIKIGDLSVDLHGFSVKKFNEKINLTAKEFNILKLFISNPSQVYTKSQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +++   +   +ENV+  HI +LR+K+ +       + +   +GY +
Sbjct: 183 YKSVW-EDEYHGDENVINVHIRRLREKIEDDPSHPMYIKTLWGIGYKL 229


>gi|119493491|ref|ZP_01624158.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119452674|gb|EAW33854.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 224

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +              ++     E       S   D+  ++  L       +
Sbjct: 3   ILLVEDDQRIAKALSRSLQTQNYVIDVALEGEAGWEFVQSFEYDLIVLDVMLP--KLNGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L + IR A   +P++ ++   S Q  +   D+G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  NLCQRIRQAGYTMPVLMLTAKDSSQDKVIGLDAGADDYVVKPFDLPELAARIRALLRRGT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +  +  +         L  +E  +LE  + N  +  +++ I   ++ 
Sbjct: 121 SILPPILAWEKLSLNPNTCEVTYNQHPLHLTPKEYGLLELFLHNPQRVFSRSNILEHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             D   EE  V+ HI  +R+KL+      D +++   +GY +
Sbjct: 181 FEDPPSEE-AVKVHIKDIRRKLKTVGAPPDLIETVYGMGYRL 221


>gi|317492809|ref|ZP_07951233.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918931|gb|EFV40266.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 241

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    I      G                     D+  ++  L   G   L 
Sbjct: 18  LIVEDEPKLGQLLIDYLTAGGYQPHLLADGNAVLPYVHQTPPDLILLDLMLP--GTDGLT 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR    
Sbjct: 76  LCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCVRR 135

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                   + +  +      Q ++  L   E R+L+ L    G  +++ Q+ + +Y  + 
Sbjct: 136 TESNAEPMLIIDENRYQASFQDQLLDLTPAEFRLLKTLATQPGTVLSREQLLNHLYDDY- 194

Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             V +  V+SHI  LR+KL   + G   + S   +GY  +
Sbjct: 195 RVVTDRTVDSHIKNLRRKLEQLENGEPFIRSVYGIGYRWE 234


>gi|257094547|ref|YP_003168188.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047071|gb|ACV36259.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 243

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  L   +            R D+  ++  L   G    
Sbjct: 5   LLLVEDDDAIAAALRLHLEAAGYRLHRESDGLQAMAAIDRQRWDMVLLDLMLP--GADGW 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA H+ VP+I +S   +    +   + G DD + KP    E++ARV A+ RR++
Sbjct: 63  DVCRHLRARHADVPVIMLSARSAEAHRVLGLELGADDYLAKPFSMLELVARVRALLRRIE 122

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +    GP R+ +  R+     +V PL  RE  +L +L  + G+  ++ ++ 
Sbjct: 123 QLRSSPALASELRFGPFRLDTVRRELLRGDDVVPLTLREFDLLYFLARHPGRVFSRGELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G       E+ V SHI++LR K+ +       + +   +GY  +
Sbjct: 183 QRVWGAA-FDGYEHTVNSHINRLRTKIEDDPRDPRRIVTVWGVGYRFE 229


>gi|254038194|ref|ZP_04872252.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43]
 gi|226839818|gb|EEH71839.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43]
          Length = 219

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILRKWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|160895466|ref|YP_001561048.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361050|gb|ABX32663.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 262

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++I+D AL            G  +   +       +      DV  ++  L   G   L
Sbjct: 32  YLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLP-NGFDGL 90

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R+   Q P++ +S   +    +    +G DD + KP    E+ AR+ A+ RR +
Sbjct: 91  QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +           +R+    R  E  G+   L  RE R+L +LM +  + V +T +  +++
Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R +GYS+
Sbjct: 211 D-YRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSL 251


>gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 229

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   E  ++ + +E L       D++ +   L+      
Sbjct: 3   ILVVDDDKEIVQLLEIYIRNEGY--EPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S +P++ +S   +    +    SG DD V KP +  E++ARV ++ RR +
Sbjct: 61  MEVIKQVRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTQ 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    GP+ +  D  +   ++G+V  L   E  IL  L ++  +  +   IF
Sbjct: 121 GEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ++
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227


>gi|169335013|ref|ZP_02862206.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257751|gb|EDS71717.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
           17244]
          Length = 233

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G ++  F + +  E L    +E++  I   ++      +
Sbjct: 6   ILVVDDDKEIVKAINIYLSNEGYNI--FEAYDGYEALSVLEKEEIHLIVLDIMMPKLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                +R    VP+I +S        +   + G DD V KP +  E++ARV ++ RR   
Sbjct: 64  ATITKVREKQNVPVIFLSAKSEDTDKIIGLNIGADDYVTKPFNPLELIARVKSLIRRYTI 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K ++N   TG + +  D  +  V GE   L   E +IL+ LM+   K  +  +I
Sbjct: 124 LGNMSEKEADNILTTGGLSLNEDTTEVTVDGEEVKLTSTEFKILKLLMSRPNKVFSMEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++G      + N V  H+  +R+K+  +      +     +GY I+
Sbjct: 184 YEKVWGELSYMTD-NTVAVHVRHIREKIEIDPKNPKYLKVVWGIGYKIE 231


>gi|126651117|ref|ZP_01723327.1| transcription response regulator-like protein [Bacillus sp. B14905]
 gi|126591955|gb|EAZ86021.1| transcription response regulator-like protein [Bacillus sp. B14905]
          Length = 220

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++E  +         ++   D+  ++  +        
Sbjct: 5   ILVVEDDLEIQELIKQFLMTQNYTIEVASDGVEGIKRLNTQSFDLILLDVMMPN--LNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +++R  S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 63  EVAKMLRNQSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNH 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N  N      + V  DG    V  E  PL  +E  IL+ L+ N  K + +  I   ++G
Sbjct: 123 KNWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D + E  ++++HI  LRKKL        + + + +GY ID
Sbjct: 183 -YDYSGETRMIDTHIKNLRKKL----NLPYIKTVKGIGYKID 219


>gi|297202340|ref|ZP_06919737.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197710140|gb|EDY54174.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 94/227 (41%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G  ++             + + D+  ++  L   G   LE
Sbjct: 22  LVVEDDPTIVDAIATRLRAEGFLVQTAVDGPSAVDTAEAWQPDLLILDIMLP--GFDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV  + RR++ +
Sbjct: 80  VCRRVQAARPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R   V+ E   L   E  +L  L       +++ Q+ 
Sbjct: 140 ALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + ++   D +     V+SHI  LR+K+    G + + +   +GY+++
Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241


>gi|154506657|ref|ZP_02043114.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149]
 gi|153793325|gb|EDN75748.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149]
          Length = 228

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     +    +   +    +++ EE  +   +E  S +   L+      +
Sbjct: 3   LLLVEDDIEISQMLKSYLEAENYEV--ICAVDGEEACEKFEKESYSLVLLDLMIPKISGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR HS VP+I +S   +          G DD + KP    E+LAR+ A  RR   
Sbjct: 61  EVMQHIRTHSTVPIIIVSAKDTDADKTLGLGLGADDYITKPFSVTEVLARIKANIRRSTQ 120

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +       E  G    L  +E  IL+ L+ N  K   K Q++S 
Sbjct: 121 YSKPEEQEVLMMGDLTINLTNYTVEKNGTKIDLTAKEFEILKLLVQNPQKVYTKEQMYSL 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I+       +EN V  HIS+LR K+         + +   +GY +
Sbjct: 181 IWNDA-YLGDENAVNVHISRLRNKIEEHPRSPKYIITVWGIGYKL 224


>gi|74313564|ref|YP_311983.1| DNA-binding transcriptional regulator QseB [Shigella sonnei Ss046]
 gi|91212442|ref|YP_542428.1| DNA-binding transcriptional regulator QseB [Escherichia coli UTI89]
 gi|110643266|ref|YP_670996.1| DNA-binding transcriptional regulator QseB [Escherichia coli 536]
 gi|117625331|ref|YP_854614.1| DNA-binding transcriptional regulator QseB [Escherichia coli APEC
           O1]
 gi|170018721|ref|YP_001723675.1| DNA-binding transcriptional regulator QseB [Escherichia coli ATCC
           8739]
 gi|170683979|ref|YP_001745293.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           SMS-3-5]
 gi|188495719|ref|ZP_03002989.1| QseB [Escherichia coli 53638]
 gi|191172517|ref|ZP_03034057.1| transcriptional regulatory protein QseB [Escherichia coli F11]
 gi|194431717|ref|ZP_03064008.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012]
 gi|194436837|ref|ZP_03068937.1| transcriptional regulatory protein QseB [Escherichia coli 101-1]
 gi|218560102|ref|YP_002393015.1| DNA-binding transcriptional regulator QseB [Escherichia coli S88]
 gi|218691322|ref|YP_002399534.1| DNA-binding transcriptional regulator QseB [Escherichia coli ED1a]
 gi|218701797|ref|YP_002409426.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI39]
 gi|218706652|ref|YP_002414171.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           UMN026]
 gi|237706225|ref|ZP_04536706.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA]
 gi|253772137|ref|YP_003034968.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162974|ref|YP_003046082.1| DNA-binding transcriptional regulator QseB [Escherichia coli B str.
           REL606]
 gi|256024393|ref|ZP_05438258.1| DNA-binding transcriptional regulator QseB [Escherichia sp.
           4_1_40B]
 gi|293406640|ref|ZP_06650566.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412]
 gi|293412399|ref|ZP_06655122.1| transcriptional regulatory protein qseB [Escherichia coli B354]
 gi|298382380|ref|ZP_06991977.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302]
 gi|300901405|ref|ZP_07119491.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300916867|ref|ZP_07133570.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300931911|ref|ZP_07147208.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300937501|ref|ZP_07152324.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300950767|ref|ZP_07164654.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300958409|ref|ZP_07170549.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300993285|ref|ZP_07180322.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301017281|ref|ZP_07182045.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301020011|ref|ZP_07184143.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301325626|ref|ZP_07219092.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301643606|ref|ZP_07243647.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|306816631|ref|ZP_07450763.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101]
 gi|307139714|ref|ZP_07499070.1| DNA-binding transcriptional regulator QseB [Escherichia coli H736]
 gi|312972713|ref|ZP_07786886.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70]
 gi|331643725|ref|ZP_08344856.1| transcriptional regulatory protein QseB [Escherichia coli H736]
 gi|331648819|ref|ZP_08349907.1| transcriptional regulatory protein QseB [Escherichia coli M605]
 gi|331659309|ref|ZP_08360251.1| transcriptional regulatory protein QseB [Escherichia coli TA206]
 gi|331664635|ref|ZP_08365541.1| transcriptional regulatory protein QseB [Escherichia coli TA143]
 gi|73857041|gb|AAZ89748.1| quorum sensing regulator B [Shigella sonnei Ss046]
 gi|91074016|gb|ABE08897.1| transcriptional Regulatory protein QseB [Escherichia coli UTI89]
 gi|110344858|gb|ABG71095.1| probable transcriptional regulatory protein YgiX [Escherichia coli
           536]
 gi|115514455|gb|ABJ02530.1| transcriptional regulatory protein QseB [Escherichia coli APEC O1]
 gi|169753649|gb|ACA76348.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|170521697|gb|ACB19875.1| transcriptional regulatory protein QseB [Escherichia coli SMS-3-5]
 gi|188490918|gb|EDU66021.1| QseB [Escherichia coli 53638]
 gi|190907185|gb|EDV66784.1| transcriptional regulatory protein QseB [Escherichia coli F11]
 gi|194420073|gb|EDX36151.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012]
 gi|194424319|gb|EDX40306.1| transcriptional regulatory protein QseB [Escherichia coli 101-1]
 gi|218366871|emb|CAR04641.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli S88]
 gi|218371783|emb|CAR19636.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli IAI39]
 gi|218428886|emb|CAR09831.2| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli ED1a]
 gi|218433749|emb|CAR14666.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli UMN026]
 gi|222034749|emb|CAP77491.1| Transcriptional regulatory protein qseB [Escherichia coli LF82]
 gi|226899265|gb|EEH85524.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA]
 gi|242378577|emb|CAQ33364.1| QseB transcriptional activator [Escherichia coli BL21(DE3)]
 gi|253323181|gb|ACT27783.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974875|gb|ACT40546.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli B str. REL606]
 gi|253979031|gb|ACT44701.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli BL21(DE3)]
 gi|284923046|emb|CBG36139.1| two-component system response regulator [Escherichia coli 042]
 gi|291426646|gb|EFE99678.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412]
 gi|291469170|gb|EFF11661.1| transcriptional regulatory protein qseB [Escherichia coli B354]
 gi|294493099|gb|ADE91855.1| transcriptional regulatory protein QseB [Escherichia coli IHE3034]
 gi|298277520|gb|EFI19036.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302]
 gi|299881968|gb|EFI90179.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300305099|gb|EFJ59619.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300314918|gb|EFJ64702.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300355177|gb|EFJ71047.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300400254|gb|EFJ83792.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300415837|gb|EFJ99147.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300449937|gb|EFK13557.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300457459|gb|EFK20952.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300460334|gb|EFK23827.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300847598|gb|EFK75358.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301077990|gb|EFK92796.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|305850196|gb|EFM50655.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101]
 gi|307625369|gb|ADN69673.1| DNA-binding transcriptional regulator QseB [Escherichia coli UM146]
 gi|309703456|emb|CBJ02796.1| two-component system response regulator [Escherichia coli ETEC
           H10407]
 gi|310332655|gb|EFP99868.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70]
 gi|312947587|gb|ADR28414.1| DNA-binding transcriptional regulator QseB [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315288813|gb|EFU48211.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315297717|gb|EFU56994.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|315617296|gb|EFU97904.1| transcriptional regulatory protein qseB [Escherichia coli 3431]
 gi|320176208|gb|EFW51272.1| Two-component system response regulator QseB [Shigella dysenteriae
           CDC 74-1112]
 gi|320180948|gb|EFW55869.1| Two-component system response regulator QseB [Shigella boydii ATCC
           9905]
 gi|320195177|gb|EFW69806.1| Two-component system response regulator QseB [Escherichia coli
           WV_060327]
 gi|323188540|gb|EFZ73825.1| transcriptional regulatory protein qseB [Escherichia coli RN587/1]
 gi|323935972|gb|EGB32267.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323941875|gb|EGB38054.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323951450|gb|EGB47325.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323957822|gb|EGB53536.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323960927|gb|EGB56546.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323966555|gb|EGB61988.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323971849|gb|EGB67074.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323978902|gb|EGB73982.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324005372|gb|EGB74591.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324011978|gb|EGB81197.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|327251811|gb|EGE63497.1| transcriptional regulatory protein qseB [Escherichia coli STEC_7v]
 gi|330909085|gb|EGH37599.1| two-component system response regulator QseB [Escherichia coli
           AA86]
 gi|331037196|gb|EGI09420.1| transcriptional regulatory protein QseB [Escherichia coli H736]
 gi|331042566|gb|EGI14708.1| transcriptional regulatory protein QseB [Escherichia coli M605]
 gi|331053891|gb|EGI25920.1| transcriptional regulatory protein QseB [Escherichia coli TA206]
 gi|331058566|gb|EGI30547.1| transcriptional regulatory protein QseB [Escherichia coli TA143]
 gi|332344981|gb|AEE58315.1| transcriptional regulatory protein QseB [Escherichia coli UMNK88]
          Length = 219

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|225872589|ref|YP_002754044.1| response regulator DrrA [Acidobacterium capsulatum ATCC 51196]
 gi|225791970|gb|ACO32060.1| response regulator DrrA [Acidobacterium capsulatum ATCC 51196]
          Length = 232

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 99/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D A +           G ++  +++      L  + R+  +     ++  G   L
Sbjct: 5   IFVLEDDADIARLVQHNLQSAGYAIRLYST--PANLLSDAERQPPALFMLDIMVPGGDGL 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R +R H   S +P+I ++        +   + G DD + KP   RE+LARV A+ RR
Sbjct: 63  DVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLRR 122

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +  +         + + +     +V+GE+      E R+L+YL  + G+  ++  +  A
Sbjct: 123 FERPSTPSLISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLLDA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           ++G     V    V+ ++ ++R+K+ +       + + R  GY  +
Sbjct: 183 VWGDA-RFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227


>gi|218441192|ref|YP_002379521.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173920|gb|ACK72653.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 227

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   +         + G  ++   + LE + +++S    D+  ++  L       
Sbjct: 3   ILLVEDEPGIAQFINQGLKETGYGVDLAIDGLEGKRYIESV-EYDIIILDIMLP--KIDG 59

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L   IRA   V P++ ++   S++  +   + G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  LTLLGEIRAKKNVTPVLLLTAKDSIEDRVKGLNGGADDYLVKPFAFSELLARIRALQRRP 119

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +   +   +++    R+ +   ++  L   E ++LEYL+ N  + + +TQI   ++
Sbjct: 120 PLQFSTILQLEDLKMNLVTREVKRGDKIIDLSPLEFKLLEYLLRNANQVLTRTQIGEQVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            L D     NVV+ +I  LR+K+        + + R +GY +
Sbjct: 180 DL-DFYTNSNVVDVYIGYLRRKIDRGFDNQLLHTIRGVGYCL 220


>gi|209885699|ref|YP_002289556.1| transcriptional regulatory protein QseB [Oligotropha
           carboxidovorans OM5]
 gi|209873895|gb|ACI93691.1| transcriptional regulatory protein QseB [Oligotropha
           carboxidovorans OM5]
          Length = 224

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   LLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLP--KMDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    R + ++ P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SVLESWRRNKRIMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELTCGSVVLDTRTGRVTVDGNPIKMTSHEYRLLAYLMHHAGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL    G + + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKL----GVEIIQTVRGLGYLL 216


>gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 223

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  +D   +++  +     +G  ++G            S   DV  ++  +   G   L
Sbjct: 3   ILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDYDVVILDIMMP--GIDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +R+    VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  TVLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               + A    + V    R     G    L  RE  +LE L+ ++G  +++TQ+ + ++ 
Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F      N+V+ +I  LRKK+ +      + + R  GY++
Sbjct: 181 -FGFEGGSNIVDVYIRYLRKKIDDPFEKKLIHTVRGAGYTL 220


>gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium kansasii ATCC 12478]
          Length = 240

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +         G  +   ++          AR D   ++  +   G    
Sbjct: 16  ILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDAVILDVMMP--GMDGF 73

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR  
Sbjct: 74  GVLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  N+R     I +  +  +    G+   L   E  +L Y + N G  ++K +I  
Sbjct: 134 KGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 HVW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 236


>gi|298695623|gb|ADI98845.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323443678|gb|EGB01291.1| two-component response regulator [Staphylococcus aureus O46]
          Length = 224

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++  +   G    +
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMM--DGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN+    G + +     + +V  +   LP +E ++L  L     +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLATRPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|163854400|ref|YP_001628698.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163258128|emb|CAP40427.1| two-component response regulator [Bordetella petrii]
          Length = 220

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   +           G +++     +   +L      D   ++  L       L 
Sbjct: 4   LLIEDEPTLAAQLEQALRAAGYTVDRAADGQTAHYLGDVEAFDAVVLDLGLPV--LDGLT 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R  RA    +P++ ++   S    +   D+G DD + KP H  E+LARV A+ RR  V
Sbjct: 62  VLRRWRAAGRNMPVLILTARDSWHEKVAGIDAGADDYLAKPFHMEELLARVRALIRRNSV 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++     GP+ + +      + G    L   E ++L  LM + G+ V++ Q+   +Y  
Sbjct: 122 HASAEWRCGPLMLDTRQARVTLDGAPITLTSHEFKVLAMLMQHAGEVVSRQQLVEHLYAQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D   + N ++  I +LRKKL      D +++ R LGY +  N
Sbjct: 182 -DFDRDSNTIDVFIGRLRKKL----PPDTIETVRGLGYRLAGN 219


>gi|120554212|ref|YP_958563.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120324061|gb|ABM18376.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 221

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + +       DDG +++   +L F E    +   D+  ++  L         
Sbjct: 4   LLVEDTAGLGEAVRDQIADDGHAVDWVQTLRFAEASIRTTAYDLILLDLMLPD--GHGFG 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R IRA     P+I ++    +   ++  ++G DD + KP    E+ ARVAA+ RR + 
Sbjct: 62  FLRTIRATGITTPVIILTARDQVSDRIEGLNAGADDYLVKPFDLSELSARVAAVARRYRG 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +          G    L  RE  + E  +   G  ++++Q+   +Y  
Sbjct: 122 NPSPIIQVGELMIDLGDHRISRNGLPVELTAREWALFEGFIQRPGMLLSRSQLEDRLY-A 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           F   +E N +E ++S+LRKKL    G D + + R +GY ++
Sbjct: 181 FGAEIESNTIEVYVSRLRKKL----GRDAIVTVRGMGYRLE 217


>gi|270290714|ref|ZP_06196938.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Pediococcus acidilactici 7_4]
 gi|270280774|gb|EFA26608.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Pediococcus acidilactici 7_4]
          Length = 234

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +              +   ++           R D   ++  L       +
Sbjct: 5   ILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQ--LDGV 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E  + IR  + Q+P+I ++   S    +   + G DD + KP   +E+++R+ AI RR  
Sbjct: 63  EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               LK          + +       +   +   L   E R+L++L  N  + +++ QI 
Sbjct: 123 RVVDLKKIVPELPVTGVTIDFKRLTVQKNEQPVALTPNEFRLLKFLFQNSNQVLSRDQIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             ++G ++   +  +V+ HIS LR KL +       + + R  GY
Sbjct: 183 EQVWG-YEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGY 226


>gi|126658619|ref|ZP_01729765.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620056|gb|EAZ90779.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 243

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    +   A  D+  ++  +        
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMP--KLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGAPGIPSSGVISIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|315039139|ref|YP_004032707.1| two-component response regulator [Lactobacillus amylovorus GRL
           1112]
 gi|325957610|ref|YP_004293022.1| two-component response regulator [Lactobacillus acidophilus 30SC]
 gi|312277272|gb|ADQ59912.1| two-component response regulator [Lactobacillus amylovorus GRL
           1112]
 gi|325334175|gb|ADZ08083.1| two-component response regulator [Lactobacillus acidophilus 30SC]
 gi|327184255|gb|AEA32702.1| two-component response regulator [Lactobacillus amylovorus GRL
           1118]
          Length = 228

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  ++  E    L ++    +  ++  +       
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPN--MSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR +
Sbjct: 61  IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 KQVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|293572383|ref|ZP_06683365.1| regulatory protein VanR [Enterococcus faecium E980]
 gi|291607543|gb|EFF36883.1| regulatory protein VanR [Enterococcus faecium E980]
          Length = 229

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++G   E   + + +E L       D+  +   ++      
Sbjct: 3   ILIADDDKEIVELLSIYVHNEGY--EAVKAYDGKEALSKIRTIPDIDLLILDIMMPEMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR K
Sbjct: 61  MQVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       +  E   + +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 MQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 181 ERVWKQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|237747933|ref|ZP_04578413.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
 gi|229379295|gb|EEO29386.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
          Length = 233

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            ++++D   + +         G   +  F+  +    LQ   R DV  ++  L    G +
Sbjct: 8   ILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQRF-RPDVVLLDWMLPDLSGLR 66

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +L   R  R    +P+I ++     +  +   D G DD + KP   +E++AR+ A+ RR 
Sbjct: 67  LLTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRK 126

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + +    G + +  +     + G    +   E ++L++LMAN  +  +++Q+   +
Sbjct: 127 VPDRAKSLLRAGSVTLDPESCQVNIDGSDVEMGNSEFKLLKFLMANPDRVFSRSQLLDKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      +EE  V+ H+ +LRK L  K   + V + R +GY +
Sbjct: 187 W-SNQLDIEERTVDVHVLRLRKAL--KGQENLVRTVRGMGYML 226


>gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
 gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
          Length = 223

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 101/223 (45%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G   E   +++  + ++   +E    I   ++       
Sbjct: 4   LLIVDDEERIRDIIKKYAQFEGF--ETVEAVDGLQAVEICRKESFDLIIMDVMMPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              R IR  S  P++ +S        +  F+ G+DD V KP   +E++ RV+AI +R   
Sbjct: 62  SAVREIRKTSSTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILKRSGG 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +    G + V   GR   + G+   +  +E  +  YL+ N+G  + + ++ + ++
Sbjct: 122 GEAQRDVVTYGGLTVDFTGRLVYIDGKRVDMTPKEYDLFFYLVKNKGIALTREKLINEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   ++  +++HI  LRK L    G   + + R +GY  +
Sbjct: 182 G-YDFYGDDRTLDTHIKLLRKSLGEYSGT--ITTLRGVGYRFE 221


>gi|295108640|emb|CBL22593.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G  +E  N  +           D+  ++  L        
Sbjct: 4   ILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALKEEYDLIILDLMLPEV--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +R    +P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  DICRQVRQEKNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V N+  E   I++    R   V GE      +E  +L +L  N  +   K ++F
Sbjct: 122 LVGSVAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 182 RQIWDM-ESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227


>gi|237737185|ref|ZP_04567666.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229421047|gb|EEO36094.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 227

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 99/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   +          +G S++     E        A  D+  ++  +    G +VL
Sbjct: 4   LVVEDERDLNRVICKKLKVEGYSVDACYDGEEALLYIDGATYDIILMDIMMPKLNGYEVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  ++ R  +  P++ ++   +++  +   D G DD + KP H  E++AR+  + RR   
Sbjct: 64  E--KMRREKNSTPVLFLTAKDAIEDRVKGLDLGADDYIVKPFHFDELMARIRVLIRRNHG 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S +N      + +    R  +   +   L  +E  ILEY+M N+G  +++ ++   I+  
Sbjct: 122 SVSNELRVADLVMDCATRIVKRGDKEIDLSAKEFAILEYMMQNQGVVLSREKLEEHIWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ +I  LR K+        + + R +GY +
Sbjct: 181 YDYQGASNMIDVYIRYLRIKMDKDFEPKLIHTIRGVGYVL 220


>gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 224

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G  ++  +  +       SA  D + ++  +  +     
Sbjct: 3   ILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADYDAAILDIMMPRR--NGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119
           E+ + +R+   + P++ ++   S+   +   D G DD + KP    E+LAR+  + R R 
Sbjct: 61  EVLKRLRSLGKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIRVLTRKRS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G +R+ +             L  RE  ILEYL  N+GK +++ QI + ++ 
Sbjct: 121 THRTSVIAIGDLRIDTGSHSVVRGARAIELSSREYAILEYLALNQGKVLSREQIENHVWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            FD +   NVV+ +IS LRKK+ +  G   + +    G+ +  +
Sbjct: 181 -FDYSGGTNVVDVYISYLRKKIDSGEGKKLIRTVWGTGWMLKED 223


>gi|199597241|ref|ZP_03210672.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199591757|gb|EDY99832.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 234

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 91/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +   +E     +       S   D   ++  L       L
Sbjct: 4   ILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPS--LSGL 61

Query: 62  EL-PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  +I     Q P++ ++   +    +   + G DD V KP   REI+AR+ AI RR +
Sbjct: 62  DVTCKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQ 121

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      N+   G I +  +       G    L  +E  +L Y     GK +++  
Sbjct: 122 SQPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDA 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + + ++G FD   E  +V+  +S LR K+  +    D + + R  GY ++
Sbjct: 182 LLNGVWG-FDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQME 230


>gi|73748816|ref|YP_308055.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|73660532|emb|CAI83139.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
          Length = 227

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +   A    +G  +      +           D+  ++  L        
Sbjct: 5   ILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPE--ISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R IR  S VP+I ++    L   L   + G DD + KP   +E++ARV    RR + 
Sbjct: 63  DVCREIRKESHVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++      + +  + R  ++ G+   L   E  IL  L  + G+  ++ QI   + 
Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
                   E  ++SHI  LRKK+   L     + +   +GY +
Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKM 223


>gi|291446254|ref|ZP_06585644.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349201|gb|EFE76105.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 283

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 59  LVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPD--MDGLA 116

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R ++ VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 117 VLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGS 176

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +       +    G + +  D  +    GE   +   E  +L +LM N  + ++K QI  
Sbjct: 177 AVAAGRGESTLTVGDLVLDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQILD 236

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 237 RVWN-YDFGGQANVVELYISYLRKKI-DAGRTPMIHTRRGAGYLI 279


>gi|167748370|ref|ZP_02420497.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
 gi|317472095|ref|ZP_07931427.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167652362|gb|EDR96491.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
 gi|316900499|gb|EFV22481.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 229

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +            +E     E    L  +   D+  ++  L   G    E
Sbjct: 5   LIVEDELAIAELEKDYLELSSFEVEIETDGEKGLKLGLTEDFDMIILDIMLP--GVDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR    +P++ +S        +     G DD + KP    E++ARV A   R +  
Sbjct: 63  ICKQIREKKDIPILMVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLERYRRL 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N+  E   +++    R   + GE      +E  +L +L ++  +   K ++F+
Sbjct: 123 VSSNTQENDVVEIRGLKIDKTARRVYLNGEEKAFTTKEFDLLTFLASHPNRVFTKEELFN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 183 KIWDM-ESLGDIATVTVHIKKIREKIELNTAKPQYIETIWGVGYRF 227


>gi|161506258|ref|YP_001573369.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867605|gb|ABX24228.1| hypothetical protein SARI_04453 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 270

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G S++ F      +    SA  D   ++  L   G    
Sbjct: 54  ILLIEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLP--GMDGR 111

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R  R    Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        +      L  +E  +LE LM N+G+ + +  I   +Y 
Sbjct: 172 GQASSELRHGQVTLNPGNLVATLADAPLALKPKEFALLELLMRNKGRVLPRKLIEEKLYN 231

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 232 -WDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 267


>gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 243

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L++  + +   +   ++       
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDV--VTAADGEEALETFRKTEPDLVVLDVMMPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGASGIPSSGVIQVATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGY 231


>gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 241

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G      +     E LQ++ +     I   ++  G    E
Sbjct: 6   LVIEDEPTLARLLSYNLTQEGYETTVID--HGAEGLQAALQRSFDLIILDIMLPGLNGFE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R +  + P+I ++   + +  +     G DD + KP    E+LARV+A+ RR ++
Sbjct: 64  ILTKLRQNGIRTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQL 123

Query: 122 SNNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              +A           G + +F +  +  + GE  PL  +E  +L YL+   G  V +  
Sbjct: 124 DEGKATVESNEKVISAGELSIFPEKYEVILNGESVPLRPKEFEVLLYLVQRPGMVVTRDD 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + ++G FD    +  V+ H+S LRKKL        ++S R +GY +
Sbjct: 184 LMNIVWG-FDYIGGQRTVDVHVSSLRKKLELGQQSVQIESIRGVGYKL 230


>gi|227112647|ref|ZP_03826303.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 242

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +    +        +     N  +  EW        +  ++  L G     
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVEW-VRLHSPSLILLDLMLPGC--DG 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR  S VP+I ++        L   + G DD + KP   RE++ RV  + RR  
Sbjct: 70  LTLCRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCG 129

Query: 121 VSNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N+  +        + +   G      G+   L   E R+L+ L A  GK  ++  +  
Sbjct: 130 WQNDGLKAVEKTETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSAEPGKVFSREALLD 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +Y  +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 190 KLYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235


>gi|254429432|ref|ZP_05043139.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195601|gb|EDX90560.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 227

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +               E  +S +    L          ++  L       +
Sbjct: 4   ILIVEDEPRLSQLVADYLQHAHYQTEQTDSAKAAIALAREQSFQAVLLDLMLPD--GDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR HS VP++ ++        L   + G DD + KP   RE++ARV A+ RR   
Sbjct: 62  EVCKAIRQHSNVPILMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLRRANP 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                E   +++  +  +  ++     +   L   E  +L  L  + G+  ++ Q+   I
Sbjct: 122 EPTEQE-HELQLDEERYEAILKQPQGQQRIALTAIEFALLATLSRHPGRIWSRDQLMDEI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221
           Y      V +  ++SHI KLR+KL   ++   D + S   +GY ++
Sbjct: 181 Y-KDHRVVSDRTIDSHIRKLRRKLSDGDEQSHDWIGSVYGVGYRLE 225


>gi|163816027|ref|ZP_02207397.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759]
 gi|158448837|gb|EDP25832.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759]
          Length = 222

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     +    +G +++     +           D   ++  +       +E
Sbjct: 4   LVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDFIEMTEYDGVIMDIMIPHV--NGME 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IRA++Q VP++ ++     Q  +   D+G  D + KP    E LAR+  + R   V
Sbjct: 62  VLKTIRANNQQVPVLFLTAKGETQDIVRGLDAGASDYMTKPFEFPEFLARLRVMLRTQGV 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N N    G + V  +       G    L  RE  ILEYL  NR   V + QI + I+ +
Sbjct: 122 VNENVIACGSLVVDMNNHKAVRDGRNIDLTVREYAILEYLARNRNIVVTREQIRANIWNI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D+ V  NVV+ +I  LR+K+ +K     + + R +GY ++ 
Sbjct: 182 -DDDVNSNVVDVYIRYLRRKIDDKYDDKLIQTIRGVGYKLEC 222


>gi|149365314|ref|ZP_01887349.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|167469861|ref|ZP_02334565.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis FV-1]
 gi|218929914|ref|YP_002347789.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis CO92]
 gi|115348525|emb|CAL21464.1| two-component system response regulator [Yersinia pestis CO92]
 gi|149291727|gb|EDM41801.1| two-component system response regulator [Yersinia pestis CA88-4125]
          Length = 239

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G   +   +              +  ++  L   G   + 
Sbjct: 15  LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLP--GSDGIT 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR  + 
Sbjct: 73  LCREIRRFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +  P+ +         QG +  L   E R+L+ L +  G   ++ Q+ + +Y  +
Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
              V +  ++SHI  L++KL    G  P + +   +GY  +
Sbjct: 193 -RVVTDRTIDSHIKNLQRKLELLDGEKPFIRAVYGMGYRWE 232


>gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
 gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
          Length = 232

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
            ++I+D   +++    L  + G  +E   + + EE LQ   +  D+  I+  +       
Sbjct: 4   LLIIEDDETIRNALRILLENQGYFIE--EAHDGEEGLQKFDSTFDLLIIDIMMPN--ISG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP++ ++        ++   +G DD + KP  + E++AR+ A+ RR +
Sbjct: 60  IEVCRRIREKSYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCR 119

Query: 121 VSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V +N            E   + +++   +    G    L  +E +IL  L+++  K  + 
Sbjct: 120 VYDNADASDTTASSTIERCGLTLYTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFST 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             IF +++         N +  HI  LR KL    G    + +    GY  +
Sbjct: 180 QNIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFE 231


>gi|268589246|ref|ZP_06123467.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131]
 gi|291315431|gb|EFE55884.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131]
          Length = 224

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D G  ++     +  ++    +  D++ ++  L    E  L
Sbjct: 3   ILIVEDNALLRHHLTVQLKDLGHQVDSAEDAKEADYFLHESCPDIAVVDLGLPD--EDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +  R  H  +PL+ ++   S Q  +   +SG DD V KP    E++AR+ A+ RR  
Sbjct: 61  SMIKRWRGEHVNIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E G   +    ++  V GE   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVLELGNFVIDLSRKEFTVNGETVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKK++     D + + R  GY  D N
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQFHSDDVIVTVRGQGYRFDVN 223


>gi|224477348|ref|YP_002634954.1| hypothetical protein Sca_1863 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421955|emb|CAL28769.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 224

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 103/222 (46%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +    +G     +++ E           D++ I+  +   G    E
Sbjct: 5   LIVDDDYQILHYVSSYLEKEGFKTVTYSNAEDALKYLDKQHVDIAIIDIMM--NGMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L + I+ +  +P+I ++   +L    + + +G DD V KP   +E++ R+ A+ RR ++ 
Sbjct: 63  LCQEIKDNYTLPVIMLTARDALSDKEEAYLTGTDDYVTKPFEVQELIFRIKAVLRRYQIN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + N  E G +++     +     +   LP +E  +L  L+++  +  ++ +    ++G F
Sbjct: 123 AENELEIGNLKLNQSYLEISTANKTMTLPNKEFHLLFLLVSHPKQIFSREECIERVWG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   ++  V+ HI +LR +L        +++ R LGY  + +
Sbjct: 182 DYDGDDRTVDVHIRRLRNRLNKIGSNISIETVRGLGYKAEVH 223


>gi|187933165|ref|YP_001886869.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187721318|gb|ACD22539.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 228

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++        + +    +      ++  ++  +       +
Sbjct: 5   ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQ--IDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I IS        +    +G DD + KP +  E++ARV +  RR + 
Sbjct: 63  EACMRIRKDKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQK 122

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N          E G + + +D R   V      L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTGSNNQKVIIEIGDLTINTDTRQIWVGENEIRLTPKEFDILELLARNKGIVLSIRKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++   +    +N V  HI+ LR+K+  +      + +   +GY I
Sbjct: 183 EEVW-KEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGYKI 228


>gi|330505347|ref|YP_004382216.1| DNA-binding response regulator CreB [Pseudomonas mendocina NK-01]
 gi|328919633|gb|AEB60464.1| DNA-binding response regulator CreB [Pseudomonas mendocina NK-01]
          Length = 226

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G      +       L  +   D++ ++  L        
Sbjct: 4   ILIVEDEAAIADTLVYALQAEGFVTRWSSLGGEALMLLENDAFDLAILDVGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S+VP+I ++        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EVCKRLRRFSEVPVIFLTARSEEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRVAP 121

Query: 122 SNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               A + P   ++          G+   L R E R+L  L+    +  ++ Q+  A+ G
Sbjct: 122 REAPAASAPSIFQIDDAAFRIHYHGQALSLTRHEFRLLRTLLGQPRRVYSREQLLDAL-G 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +  EA  E  ++SHI  +R KLR      +P+ + R LGYS +
Sbjct: 181 VASEAGYERNIDSHIKSVRAKLRAIAPSEEPIQTHRGLGYSYE 223


>gi|297529552|ref|YP_003670827.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297252804|gb|ADI26250.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 241

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 96/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++   + +  E L+ +   D   I   L+  G+  +
Sbjct: 10  ILVVDDEERIRRLLKMYLERENYVID--EAGDGNEALEKALTNDYDVILLDLMLPGKDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P++ ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 68  EVCKEIREQKTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      + + +D     V G+   L  +E  +L +L  +  K   + Q
Sbjct: 128 AAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221
           +   ++  ++   +   V++HI +LR+KL   +      + +   +GY  +
Sbjct: 188 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237


>gi|317132092|ref|YP_004091406.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470071|gb|ADU26675.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 230

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G                     D+  ++  L   G   +E
Sbjct: 7   LVVEDDKRLARLLELELKHAGYESRCECDGTQGLRSVRFWEPDLILLDRMLP--GMDGVE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP++ ++        ++  DSG DD + KP    E+LAR+ A  R     
Sbjct: 65  VCRNVRLFSSVPILMLTAKGETVDKVEGLDSGADDYITKPFQMEELLARMRAALRGNDSP 124

Query: 123 NNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +               L +RE  +LEY+M NR   + + QI   ++G 
Sbjct: 125 GQTPLLVVQNLTLDPFKHTVCRDDTEIELTKREFDLLEYMMRNRSIVLTRGQILDHVWGE 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                E N+V+ +I  LR K+ +      + + R +GY +D
Sbjct: 185 T-YEGEANIVDVYIRYLRGKMDDAFEPKLLHTVRGVGYVLD 224


>gi|302878086|ref|YP_003846650.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302580875|gb|ADL54886.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 221

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+ DG  A     G +++        E   S    D   ++  L       ++
Sbjct: 4   LLVEDDPLLGDGIRAGLMQAGFAVDWAKDGREAELAVSGEPYDAVVLDLGLPR--LPGMD 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R  R     VP++ ++   S+   +   D+G DD + KP    E+ AR+ A+ RR K 
Sbjct: 62  MLRRTRTSKNPVPILILTARDSVADRVAGLDAGADDYLIKPFDLGELQARLRALVRRAKS 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +   GR   + G    L  RE  IL  L+ N G+ ++K Q+   +YG 
Sbjct: 122 QIEPVIAHGALYLDPAGRSVTLAGRSVELSAREFAILHELLLNAGRVLSKAQLEEKLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N VE  +  LR+KL      D + + R +GY I
Sbjct: 181 WGEEIESNAVEVFVHHLRRKL----APDLIRTVRGVGYMI 216


>gi|254410208|ref|ZP_05023988.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183244|gb|EDX78228.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 218

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 95/218 (43%), Gaps = 6/218 (2%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D   + D       D   +++  +  E    L  S   D+  ++  L       + L R
Sbjct: 2   EDDERITDALEEDLTDQHYAIDVAHDGEEGLNLADSVTYDLILLDIMLP--KIDGIALCR 59

Query: 66  IIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
            +R      P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR +  + 
Sbjct: 60  RLRSQGCSTPILMLTAKDTITDKVVGLDAGADDYLVKPFDLEELSARIRALLRRGVSTAP 119

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E G +R+     +   Q  +  L  +E  +LE+ + +  +  ++ QI   ++  F+ 
Sbjct: 120 PVLEWGKLRLDPSTCEVFYQDRLLSLSPKEYSLLEFFLRHGRRVFSRAQILEHLW-PFER 178

Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             EE  V++HI  LR+KL       D +++   LGY +
Sbjct: 179 LPEEATVKAHIRSLRQKLEAGGAPSDLIETVYGLGYRL 216


>gi|261404059|ref|YP_003240300.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261280522|gb|ACX62493.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 226

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++       + G  +EG   + +  E L    +  V  +   ++      
Sbjct: 4   ILVVDDDPNIRELIKVFLEEAG--MEGVMEASDGVEALSVMEQVSVDLVVMDIMMPNMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR ++ +P++ ++     +  +  F+ G DD + KP    E++ RV A+ +R +
Sbjct: 62  WELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQ 121

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V+ ++    G +++     + +   EVF LP +E  +L  L +  G  + + ++   I+G
Sbjct: 122 VAASQTVTIGNLQMNRKTYEAKAGDEVFTLPLKEFELLFKLASYPGSTLTRDRLIEDIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D    E  ++ H+++LR++   +     + + R LGY ++
Sbjct: 182 -YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLE 222


>gi|163815699|ref|ZP_02207071.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759]
 gi|238925901|ref|YP_002939419.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|253578345|ref|ZP_04855617.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|158449004|gb|EDP25999.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759]
 gi|238877578|gb|ACR77285.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|251850663|gb|EES78621.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
 gi|291522656|emb|CBK80949.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 233

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D       +DG S+ + +N LE  + ++ S + D++ ++  L       
Sbjct: 5   ILIVDDEKEIVDLLEVYLSNDGYSVYKCYNGLEAMKCIKQS-QIDLAILDIMLPD--IDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L + IR     P+I ++        +     G DD + KP +  E++ARV    RR +
Sbjct: 62  FRLCQKIREKFYFPIIMLTAKIEDSDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYQ 121

Query: 121 VSN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             N          +  +   + +        + G+   L   E  IL YL  ++GK VA 
Sbjct: 122 SYNSPNLSQSEEKDEYDIRGLLINRVSHKCYLYGKEIALTPLEFSILWYLCEHQGKVVAS 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            ++F A++         N V +HI +LR+KL         + +   +GY I+
Sbjct: 182 EELFEAVWKEKYLRNSNNTVMAHIGRLREKLNEPSKNPKFIKTVWGVGYEIE 233


>gi|315039000|ref|YP_004032568.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|312277133|gb|ADQ59773.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|327184133|gb|AEA32580.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 233

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V        G +G  +      + +E L+   +ED + I    +      +
Sbjct: 8   ILLVEDEEAVASFVKTELGFEGYQVIWAQ--DGKEALELFQKEDPTLILLDWMLPVYDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++   S        D G+DD + KP    E+ AR+  I RRLK 
Sbjct: 66  TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKK 125

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  +          GP+++     +     E   L  +E  ++  LM +  K  ++ ++ 
Sbjct: 126 TQEQNAAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   + N V+ +I  +R KL        + + R LGY +
Sbjct: 186 DVVWG-YDFVGQTNTVDVYIRTIRNKLGEPY-KKLIKTVRGLGYCL 229


>gi|229819772|ref|YP_002881298.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565685|gb|ACQ79536.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 242

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 21/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +       F  +G ++E  +              DV  ++  L   G   LE
Sbjct: 13  LVVEDEPDIATSIARRFTAEGWTVEIASDGLAGVEAAKRYAPDVIVLDVMLP--GIDGLE 70

Query: 63  LPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + R I+A     VP++ ++        L     G DD + KP   RE+LARV A+ RR +
Sbjct: 71  VCRRIQAEDPRAVPILMLTARDDETDLLVGLGVGADDYMTKPFSMRELLARVKALLRRHE 130

Query: 121 ------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                        +    E G + +    R     G    L   E  +L  L ++    +
Sbjct: 131 RVSRLAAVPADPRAEPPLELGDLVIDRAQRRVHRAGTEAHLTPTEFDLLVCLASSPRTVL 190

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + Q+   ++   D +     V+SH+  LR+KL    G D + +   +GYS++
Sbjct: 191 TREQLLEEVWDWVDASG-TRTVDSHVKALRRKL----GADLIRTVHGVGYSLE 238


>gi|327389463|gb|EGE87808.1| response regulator [Streptococcus pneumoniae GA04375]
          Length = 214

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 23/225 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           + K+GY          +  FN  E  E  ++  + D+  ++  L       LE+ + IR 
Sbjct: 1   MTKEGYEV--------VTAFNGREALEQFEA-EQPDIIILDLMLPE--IDGLEVAKTIRK 49

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-------- 121
            S VP++ +S   S    +   + G DD V KP  +RE+ ARV A+ RR +         
Sbjct: 50  TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQPMPVDGQEA 109

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + +  D    +  GE   L  RE  +L +L ++ G+ + +  +   ++G
Sbjct: 110 DSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITREHLLETVWG 169

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            +D   +   V+  + +LR+K+ +     + + ++R +GY +  N
Sbjct: 170 -YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNN 213


>gi|167757753|ref|ZP_02429880.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
 gi|167664635|gb|EDS08765.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
          Length = 221

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D   ++D  +      G S    +       +  +   D++ ++  +       
Sbjct: 3   IVLVAEDEKDMQDIIVEYMKGGGHSCITADDGIDAVTILKNTPVDLAILDIMMPH--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + +I R    +P+I ++        L  +D G DD + KP   + +LA+V A+ RR  
Sbjct: 61  FSVCKIAREMYNIPIIFLTAKEGEDDKLKGYDIGADDYMTKPFSPKVLLAKVNALLRRSS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N       G + +        V G+   L  +E  +L + M N+ +  ++ Q+ + I+
Sbjct: 121 SENTPETLTVGNLTLIPTSHSVMVAGDDVDLTYKEFELLRFFMQNKNQVFSREQLLNRIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D       V++HI  LR+KL  +     + +    GY  + 
Sbjct: 181 G-YDFEGNTRTVDTHIKTLRQKLGAEG--RYIVTLIRSGYKFEV 221


>gi|51245737|ref|YP_065621.1| Pho two-component system sensor histidine kinase [Desulfotalea
           psychrophila LSv54]
 gi|50876774|emb|CAG36614.1| related to two-component system response regulator (Pho family)
           [Desulfotalea psychrophila LSv54]
          Length = 242

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++          G ++   +S E      +    D   ++  L   G   L
Sbjct: 6   ILIVEDEADIQQLVSYNLVRAGFNVTCADSGEEALGCLAREAFDCILLDIMLP--GISGL 63

Query: 62  ELPRIIRAH-----SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E+ + IR +     +  P+I ++     +  +D  + G DD + KP   + ++ARV A+ 
Sbjct: 64  EVCQSIRQNEGKLDAGSPIIMMTAKGEEEDIIDGLEKGADDYITKPFSPKVLVARVKAVV 123

Query: 117 RRLKVSNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR + +   +++G I      +     +   QG+   L   E  IL  L    G    + 
Sbjct: 124 RRGQKAEAHSDSGHISIANLVIDQGRYEVTAQGKAIQLTLTEFGILVLLAEKPGWVFTRQ 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A+ G +D  V    ++  I  LRKKL        +++ R +GY  
Sbjct: 184 QIIDAVRG-YDFLVTPRAIDVQIFGLRKKLGAAG--QSIETVRGIGYKF 229


>gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 226

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +++       ++G      ++      L      D+  ++  +       +
Sbjct: 5   ILIIDDDEQIRNLIAIYLENEGFEALKVSNAVCGLALLEEQEVDLIILDIMMPQ--MNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR    +P+I +S        +    +G DD + KP +  E++ARV +  RR K 
Sbjct: 63  DAAFKIREEKNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKK 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N RAE      G + +    R   V+G+   L  +E  ILE L+ ++G  ++  +I+ A
Sbjct: 123 YNERAERDIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLVRHKGTVMSMGKIYEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           ++   D    +N V  HI+K+R+K+ +       + +   +GY I
Sbjct: 183 VW-QEDAFKSDNTVMVHITKIREKIEDNPKKPIYIKTIWGVGYRI 226


>gi|13476389|ref|NP_107959.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14027150|dbj|BAB54104.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 239

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D     F + G +       E    L  +   DV  I+  +  +    L
Sbjct: 18  ILVIEDDREAADYLQKAFTEAGHTAHVAGDGETGFALADAGDYDVMVIDRMMPRR--DGL 75

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +R+     P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 76  SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 135

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +               L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 136 AKEAETVYRVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY +
Sbjct: 196 D-YHFDPQTNVIDVHVSRLRGKIEKGFDKPILHTVRGAGYML 236


>gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 249

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +                  D+  ++  L        
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPD--MDGF 74

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ ++    +   +     G DD V KP    E++AR+ AI RR  
Sbjct: 75  TVARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTH 134

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              N+         + +  D  +         L   E ++L YLM N G+ V+K QI   
Sbjct: 135 AIENQDDGVVRVADLVLDEDAHEVYRSEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDH 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           ++  +D   +  +VES+IS LR+K+    G D       + ++R +GY +
Sbjct: 195 VW-EYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243


>gi|330808420|ref|YP_004352882.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376528|gb|AEA67878.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 226

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D  L+  G +A     G+++E   +      +   A  DV  ++  L    E  L+
Sbjct: 4   LVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMVGVAEFDVMVLDLGLPD--EDGLK 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R +R    + P++ ++   S+   +D   +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLRQLRQQGLETPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S N  E G +      R+  + G+   L RRE+ +L+ L+ +RG+ ++  Q+  ++YG 
Sbjct: 122 RSVNLIEHGRLTYDPSSRETTLDGQPVDLSRREQSLLQALLHSRGRVLSTEQLKDSVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE +E N +  HI  LR+KL    G   V++ R LGY +
Sbjct: 182 NDE-LESNALNVHIHHLRRKL----GNGIVETVRGLGYRL 216


>gi|258654780|ref|YP_003203936.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558005|gb|ACV80947.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 235

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        D G  +E          +  S R D++ ++  L       L
Sbjct: 8   ILVVEDDDLLRAVIAESLRDAGHLVEVSADGMAAAAVADSFRPDLAVLDVMLPHW--SGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           EL R +R  + VP+I ++    +   L  FD+G DD + KP    E+LARV+A+ RR  +
Sbjct: 66  ELARALRGGTDVPVIFVTALDGVDDRLAGFDAGADDYLVKPFAVAELLARVSAVLRRSGR 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +S    E G + V  D    +  G+   L   ERR+L YL  +RG+ ++KTQI + ++G 
Sbjct: 126 LSAQLIEVGDLIVDDDAGVVQRAGQEIDLTATERRLLLYLARHRGRVLSKTQILTQVWGY 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +A + N+VE+ IS LR+KL    G   + + R +GY +
Sbjct: 186 --DAYDPNLVEAFISGLRRKLDQH-GPRLIHTVRGVGYRL 222


>gi|183601477|ref|ZP_02962847.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241191023|ref|YP_002968417.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196429|ref|YP_002969984.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219083|gb|EDT89724.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249415|gb|ACS46355.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250983|gb|ACS47922.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794012|gb|ADG33547.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 239

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +                   D+  ++  L       +
Sbjct: 14  ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPV--MDGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + I A   +P++ ++        +     G DD ++KP   RE++ARV A+ RR+  
Sbjct: 72  EATKRIEAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRRVDR 131

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         +   + G + +    R   + G+   L   E  +L  L       + + Q
Sbjct: 132 AKVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQ 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D A     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 192 LLEEVWDWVD-ASSTRTVDSHVKALRHKL----GASTIRTVHGVGYAFE 235


>gi|306521881|ref|ZP_07408228.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 620

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       + G ++    + + +E L    +E++  +   ++      +E
Sbjct: 6   LVVDDEKEIRDLIEIYLLNSGYNV--IKAEDGKEALDILKKENIHLMILDIMMPKMDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R    +P++ +S        +    +G DD + KP +  E+  RV ++ RR    
Sbjct: 64  VCRKVRESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  + G + +  +     V G    L  RE  IL  L  N+G+  +  +IF 
Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++         N V  H+S++R K+     G   + +   +GY I+
Sbjct: 184 KVWKEK-YYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIE 229


>gi|146309134|ref|YP_001189599.1| DNA-binding response regulator CreB [Pseudomonas mendocina ymp]
 gi|145577335|gb|ABP86867.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 226

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G      +       L  +   D++ ++  L        
Sbjct: 4   ILIVEDEAAIADTLVYALQAEGFVTRWSSLGGEALTLLENGAFDLAILDVGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S+VP+I ++        +   + G DD V KP   RE+ ARV  I +R+  
Sbjct: 62  EVCKRLRRFSEVPVIFLTARSEEIDRVVGLEIGADDYVVKPFSPREVAARVKVILKRMAP 121

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               A       ++          G+   L R E R+L  L+    +  ++ Q+  A+ G
Sbjct: 122 RETPAAGAASAFQIDDAAFCIHYHGQALSLTRHEFRLLRTLLGQPRRVYSREQLLDAL-G 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           +  E   E  ++SHI  LR KLR      +P+ + R LGYS
Sbjct: 181 VASEVGYERNIDSHIKSLRAKLRAIAPAEEPIQTHRGLGYS 221


>gi|68347297|gb|AAY94903.1| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf-5]
          Length = 229

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  I     +G +    +        Q ++  D+  ++  L        
Sbjct: 7   ILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPADLIILDIGLPD--ISGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP++ +S        +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 65  ETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMVP 124

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                A      +  +      +G+   L R E R+L+ L+    +  ++ Q+  A+ G+
Sbjct: 125 RVAPEAVAALFVIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLDAL-GV 183

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             +   E  ++SHI  LR KLR      +P+ + R LGYS
Sbjct: 184 MADVGYERNIDSHIKSLRAKLRLVAAQAEPIQTHRGLGYS 223


>gi|257459560|ref|ZP_05624669.1| transcriptional regulatory protein QseB [Campylobacter gracilis
           RM3268]
 gi|257442985|gb|EEV18119.1| transcriptional regulatory protein QseB [Campylobacter gracilis
           RM3268]
          Length = 220

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          DG S++     +        A+ D   ++A +        
Sbjct: 3   ILLVEDEKDLNQIIAKCLKKDGYSVDCAFCGKEALEFLDVAKYDAIVLDAMMPV--MDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  +  RA     P++ ++   + +  +   D G DD + KP   RE+LAR+ AI RR  
Sbjct: 61  EFLKAARARGLGTPVLFLTARDAKEDIIAGLDLGADDYMVKPFDFRELLARLRAIIRRKN 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N      +R+    +     GEV  L  +E RILE LM NRG  +++ QI  +I+ 
Sbjct: 121 ATADNEIIIRQVRLNLSKKSVVCAGEVVELTGKEYRILELLMLNRGAILSREQIGESIWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DEA   NV++  I  +RKKL      D +++KR LGY +
Sbjct: 181 FSDEA-SSNVIDVLIKNIRKKLGEHG--DIIETKRGLGYVV 218


>gi|239909225|ref|YP_002955967.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239799092|dbj|BAH78081.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 223

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +      G +++   +      L ++    V+ I+  L   G   L
Sbjct: 3   ILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLP--GLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R      P+I +S   S++  +   ++G DD ++KP    E+LARV A+ RR  
Sbjct: 61  QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++   R   G + +    R+         L  RE  +LEY M N GK ++KT I   ++
Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + N+V+  + +LR K+        + + R +GY +
Sbjct: 181 D-YHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVL 221


>gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 232

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKV--FSAYNGEEALEIINNNSIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTTEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231


>gi|71908428|ref|YP_286015.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71848049|gb|AAZ47545.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 218

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG        G +++        +    S   D   ++  L       +
Sbjct: 3   ILLVEDDPELGDGLTVGLRQAGFAVDWLRDGNSADQALQSESFDFVVLDLGLPR--LSGM 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+  R       +P++ ++   +    +   D+G DD + KPI   E+ AR+ A+ RR  
Sbjct: 61  EVLNRARGRGQDMPILILTARDATGDKVSGLDAGADDYLVKPIDLDELTARIRALTRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G + +        + G+   L  RE  +L+ L+ + G+ + +TQ+  ++YG
Sbjct: 121 GRAAPLLTHGELSIDLAAHRVTLAGQEIELSSREFSLLQMLLESAGRVLTRTQLEQSLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE  + N +E HI  LRKKL    G + + + R +GY+I
Sbjct: 181 WHDE-PDSNALEVHIHHLRKKL----GSELIRTLRGVGYTI 216


>gi|229074992|ref|ZP_04207994.1| Sensor histidine kinase [Bacillus cereus Rock4-18]
 gi|229097096|ref|ZP_04228062.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
 gi|229103157|ref|ZP_04233843.1| Sensor histidine kinase [Bacillus cereus Rock3-28]
 gi|229116059|ref|ZP_04245452.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
 gi|228667394|gb|EEL22843.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
 gi|228680262|gb|EEL34453.1| Sensor histidine kinase [Bacillus cereus Rock3-28]
 gi|228686325|gb|EEL40237.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
 gi|228708049|gb|EEL60220.1| Sensor histidine kinase [Bacillus cereus Rock4-18]
          Length = 231

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 12/218 (5%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +       ++G ++  F + + +E +Q  +  +V  +   ++      LE+ + +R ++ 
Sbjct: 16  ELLAVYLRNEGYNI--FKAYDGDEAIQMISAYEVDLMILDIMMPKRNGLEVCQEVRENNT 73

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--------N 124
           VP++ +S        +    +G DD + KP +  E++ARV A+ RR    N         
Sbjct: 74  VPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSTFQNAATQKKDDG 133

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                   +       +V  E   L   E  IL  L +N G+  +  +IF  ++   D  
Sbjct: 134 IIRIRTAEIHKHNHTVKVNNEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNE-DGY 192

Query: 185 VEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
                V  HIS LR KL   + G   + +   +GY I+
Sbjct: 193 GSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIE 230


>gi|222150338|ref|YP_002559491.1| hypothetical protein MCCL_0088 [Macrococcus caseolyticus JCSC5402]
 gi|222119460|dbj|BAH16795.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 223

 Score =  228 bits (583), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++      F      +   ++ +    L  +   D+  ++  +   G    
Sbjct: 5   ILVVDDEAAIRCEVKEGFLRHSFQVYVASNGDEAINLLDNESIDLCIVDIMMP--GIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   I+   Q+P+I ++   +L      F +G DD V KP    E++ R  AI +R + 
Sbjct: 63  QLCEQIKQDYQLPVIMLTARDALGDKRIAFQAGSDDYVTKPFEIEEVIFRAQAILKRYEK 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  + E G + + +D  +  ++ E   LPR+E  +L YL+ +  K   + Q+   I+G +
Sbjct: 123 AVEKVEFGKLIIDADSYEVTMEDESLYLPRKEFELLYYLVRHYPKVATREQLIEEIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   +E  V+ H+ ++RK+L        + + R +GY +
Sbjct: 182 DFDGDERTVDVHVKRIRKRLDAFDSGVEIQTVRGVGYKV 220


>gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 224

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D A ++         +G  +   ++      L  +   D++ ++  +       
Sbjct: 4   LILIAEDDADIRGLLKLYLEGEGFRVLEADNGARALDLARAQAPDMAILDIMMPQ--LNG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R +R  S +P++ +S        +   + G DD + KP +  EI+ARV A  RR  
Sbjct: 62  FELTRALRKFSDIPILILSAKSQDNDKILGLNLGADDYITKPFNPVEIVARVKAQLRRAS 121

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S ++      + + +        G+   L   E +IL  LM + G+   K Q++    G
Sbjct: 122 RSGSDILTVRELTLDTTTFQLTKNGKQILLTPMEYKILALLMRSPGRIYTKIQLYEGAIG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            +    ++N +  HISKLR K+ +       + + R LGY ++
Sbjct: 182 NY-FEGDDNTMMVHISKLRDKIEDDPKSPRYIITVRGLGYKLE 223


>gi|86159336|ref|YP_466121.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775847|gb|ABC82684.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 245

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           GV++              + R DV  ++  L   G+  LE
Sbjct: 21  LLVEDDLRLAAFTREYLEGHGVAVVHVTDGRRGLDEALAGRFDVVLLDLMLP--GKDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----R 118
           + R +R+ S VP+I ++        +   + G DD + KP   RE+LAR+ A+ R    R
Sbjct: 79  VCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGR 138

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V    R   + G    L   E  +L  L    G+ +A+ Q+     
Sbjct: 139 AGPPREAVRVGGLVVDPAARRVTLDGREVTLTGYEFALLHALARRAGRVLAREQLIELAG 198

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G  +EA +   V+ H+S+LR+KL +       + + R  GY +
Sbjct: 199 GSAEEAFD-RSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 240


>gi|92116986|ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799880|gb|ABE62255.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 223

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +         D G  ++     E   +L  S   D   ++  L    G  V
Sbjct: 3   LLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  R  R    +P++ ++        +  FD+G DD V KP H  EILAR+ A+ RR  
Sbjct: 63  LEAWR--RNDRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 216


>gi|108805570|ref|YP_645507.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108766813|gb|ABG05695.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 241

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++           G  +    +      +    R D+  ++  L   GE  +
Sbjct: 8   ILIVEDDEVIMGTLAYNLARQGFEVSRATTAAEGLRMARKLRPDLILLDIMLP--GESGI 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + IR     V +I I+   + +  +  F++G DD V KP   +E++AR+ A  +R  
Sbjct: 66  RVCQRIREEDEDVVIIMITAKDAEEDKVRGFEAGADDYVTKPFGMKELVARIHAHLKRSD 125

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E G + + +     +V GE   L  +E  +L  L ++ G+  ++ ++   ++
Sbjct: 126 AGHRGRVLEAGDLSLDTKNFVAKVGGEPLSLRLKEFELLAALASDPGELKSREELAKEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G          ++ HI ++R  L  K  +D + + R LGY  +
Sbjct: 186 GHAG-VGSSRTIDVHIRRIRAALEKKSAYDYIHTARGLGYRFE 227


>gi|312898518|ref|ZP_07757908.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620437|gb|EFQ04007.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 226

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD AL++         +G  +      +    + +  + D+  ++  +   G    
Sbjct: 4   ILIADDEALMRQLVADFLRPEGYEVLEAVDGKQALDIFNEQKPDLVLLDVMMP--GYDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I I+        L  +D GVDD + KP   + ++A++ A+ RRL  
Sbjct: 62  TVCREIRRTSTVPIIMITAKDEEIDQLFAYDLGVDDYITKPFSPKLLVAKMKALLRRLHG 121

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +  +     + G+   L   E ++L YLM N GK +++ QI + 
Sbjct: 122 EGEENGADAVPAEGVAIDREAHQVLIDGKSTDLSPTEYKLLNYLMTNAGKALSRRQILNK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  ++   +   V++HI++LR KL N+     + + R  GY  D
Sbjct: 182 VWN-YEYYGDLRTVDTHINRLRIKLGNRGS--YIQTVRGYGYRYD 223


>gi|222099244|ref|YP_002533812.1| Response regulator [Thermotoga neapolitana DSM 4359]
 gi|221571634|gb|ACM22446.1| Response regulator [Thermotoga neapolitana DSM 4359]
          Length = 233

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + D        +  +++     E   ++  +   DV  ++  L        E
Sbjct: 14  LLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVH--DGWE 71

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +R      P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR  +
Sbjct: 72  ILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKAE 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N +   G + + +  R     G+   L ++E +ILEYLM N+ + V K ++   ++  
Sbjct: 132 NKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLW-S 190

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD+ V  + + SHI  LRKK+        + + R +GY +
Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGYVV 230


>gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 229

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +    +   ++E     E   +L      D++ ++  L       +
Sbjct: 3   LLVVEDDPDLRRQLVTALENKNYTVEETADGEEALYLGQEYPYDLAIVDLGLP--KLSGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R  R    + P+I ++     Q  ++  ++G DD + KP H  E+ AR+ A+ RR  
Sbjct: 61  EVIRQWRDDGKEFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GPI++ + GR      E   L   E R  EYL+ N GK ++K+++   +Y 
Sbjct: 121 GHSKPVLEFGPIKMDTTGRVVYRHNEPVKLTSYEYRTFEYLVLNAGKTISKSELTEHLYH 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LR+KL       P+ + R LGY  
Sbjct: 181 Q-DFDRDSNVLEVFIRRLRQKLDPDQDLQPITTVRGLGYRF 220


>gi|88859915|ref|ZP_01134554.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas tunicata D2]
 gi|88817909|gb|EAR27725.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas tunicata D2]
          Length = 224

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 109/221 (49%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D   A    +  S++  +  E   +  +    D++ I+  L       +
Sbjct: 3   ILVIEDDLHLADNLRAALEKEKYSVDLAHDGESGLFHLTEYPLDLAVIDLGLP--KMNGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ +  RA  +++P++ ++     Q  ++  D+G DD + KP H  E++AR  A+ RR  
Sbjct: 61  EVIKRARAQQAELPILILTARDRWQDKVEGLDAGADDYLTKPFHPEELIARCNALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N     GPIR+ +  +   +      L   E R+LEYLM N  K ++K+++   IY 
Sbjct: 121 GQANPEMIAGPIRINTRSQQVWLNNIEVSLTGYEYRVLEYLMVNPQKVISKSELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  + +LRKK+      +P+++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFVLRLRKKIDPDGTLNPIETLRGRGYRL 220


>gi|220911674|ref|YP_002486983.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858552|gb|ACL38894.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 236

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +         +   D++ ++  L        
Sbjct: 10  LLVVDDEPNIRELLSTSLRFAGFEVVSAANGRDALAAADAHAPDLAVLDVMLPD--MDGF 67

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++     +  +     G DD V KP    E++AR+ A+ RR +
Sbjct: 68  TVTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 127

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  +    G V  L   E ++L YLM N  + ++K+QI   +
Sbjct: 128 PLLDDDAVIRVGDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +D   + ++VES+IS LR+K+  +      + +KR +GY +
Sbjct: 188 W-EYDFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVL 230


>gi|238758418|ref|ZP_04619595.1| Two-component response regulator of virulence determinant [Yersinia
           aldovae ATCC 35236]
 gi|238703322|gb|EEP95862.1| Two-component response regulator of virulence determinant [Yersinia
           aldovae ATCC 35236]
          Length = 223

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDTKEADYFLQEHAPDIAIIDLGLP--GEDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHEGEVITTIRGQGYRFDAN 223


>gi|187777031|ref|ZP_02993504.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
           15579]
 gi|187773959|gb|EDU37761.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G +     +    E L+     +V  I   ++      +
Sbjct: 6   ILIVDDEKEIRDLIDIYLTNEGYT--TLKASNGIEALELLKTNNVHLIILDIMMPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E    IR    +P+I +S        +    +G DD + KP +  E+LARV +  RR   
Sbjct: 64  EACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + +      I +     +  +  ++  L  RE  ILE L  NRG   +  +I
Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVRIGDQLVKLTPREFDILELLARNRGVVFSIEKI 183

Query: 174 FSAIYGLFDEAVEE-NVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +  ++   +E ++  N V  HI KLR+K+         + +   +GY ++
Sbjct: 184 YELVWK--EEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVE 231


>gi|114706629|ref|ZP_01439530.1| two-component response regulator [Fulvimarina pelagi HTCC2506]
 gi|114538021|gb|EAU41144.1| two-component response regulator [Fulvimarina pelagi HTCC2506]
          Length = 223

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 122/220 (55%), Positives = 164/220 (74%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LV DGY +LF  +GVS  GF++ EF++W+ ++   D+SA+E FL+G  ++ 
Sbjct: 1   MIVIVDNRELVTDGYQSLFAREGVSAAGFSAEEFQDWISTAPEADLSAVEGFLLGDFDER 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R IR+ S+ P+I +S+  +L  TLD F +G+DDVV KP+H +EILARV AI RR  
Sbjct: 61  ASSTRTIRSRSKAPMIALSESRNLDNTLDLFAAGIDDVVAKPVHVKEILARVGAIRRRES 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  TG I ++ DGRD EV G+   LPRRERRILEYL+AN+G+RV+K Q+FSAIYG+
Sbjct: 121 SEAAKTVTGEIAIYQDGRDAEVAGKPLALPRRERRILEYLVANKGRRVSKQQLFSAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FDE VEENV+ESHISKLRKKL+ +LG+DPV SKR+LGY I
Sbjct: 181 FDENVEENVIESHISKLRKKLKMRLGYDPVSSKRYLGYGI 220


>gi|220906521|ref|YP_002481832.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863132|gb|ACL43471.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 235

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 99/238 (41%), Gaps = 25/238 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   +          +G +     +G N++   + LQ     D+  ++  L   G
Sbjct: 3   ILIVEDDREIAQLIQTCLSKEGFTCHLRFDGLNAITAYQELQ----PDLIILDWMLP--G 56

Query: 58  EKVLELPRIIRAH----SQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
              LEL   IR      S+ P ++ ++        +    +G DD + KP   RE++ARV
Sbjct: 57  LDGLELCARIRQKASGGSKDPFILMLTAKGEELDRIIGLSTGADDYLTKPFSPRELVARV 116

Query: 113 AAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANR 164
            A+ RR      +    +T    +  D R           +   L   E  +L   ++  
Sbjct: 117 RALLRRSLRQGGQTRIYQTASFTIDPDQRCARRHYADTPEQTLDLTALEFELLSTFVSYP 176

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G+   ++Q+   ++G  D   ++ VV++H+++LRKK+  +      + +   +GY  +
Sbjct: 177 GRVWNRSQLIDKLWG-SDFFGDDRVVDTHVARLRKKIEPDSSNPTFIKTVIGVGYKFE 233


>gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 245

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L+  +RE    +   ++       
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYDV--VTAADGEEALEVFSREHPDLVVLDVMMPKLDGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR   
Sbjct: 70  GVCQELRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRADR 129

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G +++ ++ R    +GE   L   E  +LE +++  G+  ++++I 
Sbjct: 130 DTASGIPSSGVIHVGDLKIDTNKRQVYKRGERIRLTGMEFSLLELVVSRSGEPFSRSEIL 189

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRSKLEDDPSNPELILTARGTGY 235


>gi|242240125|ref|YP_002988306.1| DNA-binding transcriptional regulator BaeR [Dickeya dadantii
           Ech703]
 gi|242132182|gb|ACS86484.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 243

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G +          E    +    +  ++  L   G   L 
Sbjct: 17  LIVEDEPKLGQLLVDYLQASGYATHWLTQGNDVEPWVRAHPCRLVLLDLMLP--GRDGLS 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S VP+I ++        L   + G DD + KP   RE++ARV  + RR    
Sbjct: 75  LCQAIRGFSNVPIIMVTARTEEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCHWQ 134

Query: 123 NNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          + +          G    L   E R+L  L A   +  ++ Q+   +Y 
Sbjct: 135 SEPTAVTDRPALLIDQYRYQASYLGRNLDLTPAEFRLLRILSAEPNRVFSREQLLDNLYD 194

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 195 DY-RVVTDRTIDSHIKNLRRKLEQFDQETSFIRTVYGIGYRWE 236


>gi|160892844|ref|ZP_02073633.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50]
 gi|156865403|gb|EDO58834.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50]
          Length = 222

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 110/224 (49%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +          +G +++  F+     ++L++++ + V  ++  +  K    
Sbjct: 3   ILVVEDELDLNHIICNKLTKEGYNVDACFDGQAALDYLETASYDGV-IMDIMIPKK--DG 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + + IRA   QVP++ ++     Q  +   D+G  D + KP    E+LAR+  + R +
Sbjct: 60  MSVLKTIRAEGIQVPVLFLTAKSETQDIVRGLDAGASDYMTKPFEFSELLARLRVMLRTV 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +SN+     G +++ ++       G    L  RE  ILEYL+ N+   V + QI + I+
Sbjct: 120 HISNDSILNYGSLQIDTNNHRVVRDGVTVDLTVREYAILEYLVRNKNIVVTREQIRANIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + D+ +  NVV+ +I  LR+K+ +      + + R +GY ++ 
Sbjct: 180 SI-DDDINSNVVDVYIRYLRRKIDDPFEEKLIHTIRGVGYRLEC 222


>gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
 gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
          Length = 225

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 103/220 (46%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L+DD   + +   A     G  +    + + E+ L+   R D+  ++  L    G KVL
Sbjct: 4   LLVDDDPALLEVLGAYLRGAGFEV--LEAKDGEKALELFPRADLIILDLMLPKLDGFKVL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R  R   ++P++ ++     +  +   + G DD V KP   +E++ARV A+ RR  +
Sbjct: 62  EEVR--RERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEVVARVKALLRRAGL 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP+R+    R   ++G+  PL + E  +L  L  + G    + ++   ++G  
Sbjct: 120 -KEELCYGPLRLLPKERQAYLEGKPLPLSQLEFDLLLTLAQHPGMVFTRERLLEKVWGP- 177

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           D    + VV+ HI+ LRKKL  +      +++ R +GY  
Sbjct: 178 DFPGIDRVVDVHIAALRKKLMDDPENPRFIETVRGVGYRF 217


>gi|262373811|ref|ZP_06067089.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311564|gb|EEY92650.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 236

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  L G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     +++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKVIDANGLMLDPVSQRVSFGNSILEMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWGG-NVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227


>gi|240948578|ref|ZP_04752951.1| transcriptional regulatory protein [Actinobacillus minor NM305]
 gi|240297086|gb|EER47657.1| transcriptional regulatory protein [Actinobacillus minor NM305]
          Length = 221

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G          +++ F   +       SA  D   ++  L       L
Sbjct: 3   ILLIEDDKLIGEGIKLGLTKQNFAVDWFTDGKLGFDALFSAEYDAVILDLSLPR--MDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +  R  +Q  P++ ++   +L   +  F++G DD + KP    E++ R+ A+ RR  
Sbjct: 61  DILKQWRKENQHTPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRRSH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++    G + + S  R   + GE   L  +E R+LE    ++ + + +T I   +Y 
Sbjct: 121 QQVSSEIVIGDLVIDSHTRSVSLDGEDIALTAKEFRLLELFAHHKDRVLPRTLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  V  N +E +I  LRKKL    G   + +   +GY +
Sbjct: 180 SWDNEVSSNALEVYIHNLRKKL----GKSWIKTVHGIGYKL 216


>gi|299069565|emb|CBJ40837.1| Transcriptional regulatory protein, probable baeR protein, response
           regulator for mdtABCD and acrD [Ralstonia solanacearum
           CMR15]
          Length = 233

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +               E  +              ++  ++  L   G+  
Sbjct: 15  MILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLP--GKDG 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S +P++ ++        L   + G DD + KP   RE++AR+  I RR++
Sbjct: 73  LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRRVQ 132

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S  ++++  +++ +      ++G+   L   E R+L  L    G+ +++  +   IY  
Sbjct: 133 RSGAQSDS-LLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 191

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 192 H-RVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 232


>gi|229018790|ref|ZP_04175639.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229025034|ref|ZP_04181462.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228736240|gb|EEL86807.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228742540|gb|EEL92691.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R   +
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVTEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFE 224


>gi|115375150|ref|ZP_01462417.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|310823133|ref|YP_003955491.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115367801|gb|EAU66769.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309396205|gb|ADO73664.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 240

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A   +       + G  ++     +    + +    DV  I+  L       L
Sbjct: 18  ILLIEDDAQTAEYVRRGLTELGQLVDHAQDGQEGLLMATGGHYDVLVIDRMLP--KLDGL 75

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L R++R AH + P + ++   S+   +   +SG DD + KP    E+ AR+ ++ RR  
Sbjct: 76  TLLRMLREAHIRTPTLFLTAMGSIDDRVKGLESGGDDYLVKPFAFSELYARICSLGRRPP 135

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+          + +    R     G+   L   E R+LEYL+ + G+ V +T +   ++
Sbjct: 136 LQDVQTVFTLADLEMDLIKRTVTRSGKTLDLQPTEFRLLEYLLRHAGRAVTRTMLLEHVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             F    + N+VE+HIS+LR KL      + + + R +GY ID 
Sbjct: 196 N-FHFDPKTNIVETHISRLRAKLDRGFTPELIHTVRGVGYKIDV 238


>gi|77459601|ref|YP_349108.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77383604|gb|ABA75117.1| response regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 223

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +  +    + G S+      +  + L  +   D   I   ++       
Sbjct: 3   ILVVEDEPKAGNYLLNGLQELGYSVSLAR--DGADGLHLALEFDFDVIVLDVMMPKMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  +  P++ ++    +   +   + G DD + KP    E++AR+  + RR  +
Sbjct: 61  EVLRRLRKETDTPVLFLTARDDIADRVKGLELGADDYLIKPFSFAELVARLRTLTRRGPI 120

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + +   +++    R     G    L  +E  +L+   A+ G+ ++++ I S ++ +
Sbjct: 121 HEEEQLQVADLQIDVLKRRVTRAGNRITLTNKEFALLQLFAAHTGQVLSRSLIASRVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  + +LR K+ +      + S R +GY  D
Sbjct: 181 -NFDSDTNVVDVAVRRLRAKIDDPFPLKLIHSVRGIGYRFD 220


>gi|312144339|ref|YP_003995785.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904990|gb|ADQ15431.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 235

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 104/231 (45%), Gaps = 21/231 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
            ++++D   +++         G  +    +   +E L+  S   D+  ++  L       
Sbjct: 4   ILIVEDEKNIRELVKFNLEGAGFKV--LTASNGKEALEKISTNIDLVVLDLMLPE--IDG 59

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +RA     ++ +I ++        +   + G DD + KP   RE++AR+ AI+R
Sbjct: 60  MEVCRRLRADEKLKKIAIIMLTAKGEELERILGLEMGADDYMTKPFSPRELIARIKAIFR 119

Query: 118 RLK--------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           R++        + +     G  ++     + + + E   L  +E  +L YL+ N+G+ ++
Sbjct: 120 RMEELKLDKDTIKDEIIIAGDFKIDISRHEVKFKDENISLTLKEFELLRYLILNQGRVLS 179

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +   I+G ++ A +   V+ HI +LRKK       + + + R +GY  
Sbjct: 180 RNLLLEKIWG-YEYAGDTRTVDVHIRRLRKK----SSSEYIKTVRGVGYKF 225


>gi|310829976|ref|YP_003962333.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308741710|gb|ADO39370.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 104/226 (46%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  ++G + EG  +         S   D+  ++  L  K     
Sbjct: 6   ILVVEDDREINSMLCEMLDENGYAAEGAFTGMEGLSRLRSGDYDLLILDLMLPYK--SGD 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + + +R+ S +P+I IS   ++Q  LD F  G DD + KP    E+L RV A+ RR   
Sbjct: 64  AVLQELRSFSSLPVIVISAKDTVQNKLDLFHMGADDYLTKPFDLDEVLVRVEAVLRRCGS 123

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +    + G + V ++ +   V G+   L  +E  ILE LM    K  +K  +F +
Sbjct: 124 SEAQRAPEILQAGKLAVDTESKTASVDGQELVLTAKEYGILELLMRYPHKVFSKANLFES 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           I+   + A E+N +  H+S LR KL+      + + +   +GY ++
Sbjct: 184 IWNE-EYACEDNTLNVHMSNLRNKLKAADPETEYIKTVWGMGYRMN 228


>gi|300905846|ref|ZP_07123579.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|301301944|ref|ZP_07208078.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300402315|gb|EFJ85853.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300842925|gb|EFK70685.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|315256926|gb|EFU36894.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
          Length = 219

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +  D R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPDKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|229161461|ref|ZP_04289442.1| Sensor histidine kinase [Bacillus cereus R309803]
 gi|228621998|gb|EEK78843.1| Sensor histidine kinase [Bacillus cereus R309803]
          Length = 231

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 12/218 (5%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +       ++G ++  + + + +E LQ     +V  +   ++      LE+ + +R ++ 
Sbjct: 16  ELLAVYLRNEGYNI--YKAYDGDEALQMLCTYEVDLMILDIMMPKRNGLEVCQEVRENNT 73

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-------- 124
           VP++ +S        +    +G DD + KP +  E++ARV A+ RR    NN        
Sbjct: 74  VPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNNATQKKEDG 133

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                   +       +V  E   L   E  IL  L +N G+  +  +IF  ++   D  
Sbjct: 134 IIRIRAAEIHKHNHTLKVNNEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNE-DGY 192

Query: 185 VEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
                V  HIS LR KL   + G   + +   +GY I+
Sbjct: 193 GSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIE 230


>gi|253701123|ref|YP_003022312.1| transcriptional regulator [Geobacter sp. M21]
 gi|251775973|gb|ACT18554.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 225

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 19/230 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++I+D   + +        +G       +GF+ LE           D+  ++  L   G 
Sbjct: 5   LIIEDEKDLAELIAFNLEREGFQAIVATDGFDGLEQA----VRTLPDLILLDLMLP--GM 58

Query: 59  KVLELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
              E+ + IR   +    P+I ++        +  F+ G DD V KP   RE++ R+ A+
Sbjct: 59  LGTEVCKNIRKSDRTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELMLRMKAV 118

Query: 116 YRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            RR K    +    + GPI +  +     V G        E ++L  L    G+  ++  
Sbjct: 119 LRRSKTRPAAATAMQVGPIDIDVERHCVLVNGGEINFTGTEFKLLHTLAQRLGRVQSRDV 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   ++G ++   +   V++HI++LR KL      D + + R  GY ++ 
Sbjct: 179 LLRDVWG-YNFVDDSRTVDTHITRLRTKLGEAG--DLIKTVRGFGYKLEV 225


>gi|172035886|ref|YP_001802387.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
 gi|171697340|gb|ACB50321.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     A   +   +++     E       +   D+  ++  L       +
Sbjct: 4   ILLVEDDERIAKVLAASLTEQRYTVDMAGDGEKGWEFIEALAYDLILLDVMLP--KLTGI 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + IR     +P++ ++   + +  +   D G DD V KP    E+LAR+ A+ RR  
Sbjct: 62  GLCQRIRQSGYTIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDVPELLARIRALLRRGN 121

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V+ N   E   +R+     +     ++  L  +E  +LE  + N    ++++ I   ++ 
Sbjct: 122 VAPNPILEWQQLRLDPSNYEVTYSDKLLHLTPKEYGLLELFLRNENIVLSRSAILDNLWS 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             D   EE  V+ HI  LRKKLR      D +++   +GY +
Sbjct: 182 FEDPPSEE-AVKVHIKDLRKKLRKVGAPPDFIETVYGVGYRL 222


>gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola
           F0402]
          Length = 228

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G  +           L  S   D+  ++  L       LE
Sbjct: 5   LIVEDDEGIADFLRFELEHEGYGVLHAADGRTALELFESDTPDILLLDIMLPQ--LNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R IR  S VP+I ++        +   DSG DD + KP    E+LAR+ A+ RR +V 
Sbjct: 63  VLRRIRKTSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIRRNEVR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +        V  +   L + E  +L+  + N+   +++ +I   ++G  
Sbjct: 123 GTSVLKLRAIELDPAAMKVMVNKKHTILSKTEYLLLKTFIENKNTVLSRDRIIGEVWGE- 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  ++EN V+ ++  LR K+  K G + + + R +GY +
Sbjct: 182 NYYIDENSVDVYVRHLRSKIDEKTGEEYISTVRGVGYVM 220


>gi|300784918|ref|YP_003765209.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|7339512|emb|CAB82846.1| putative response regulator [Amycolatopsis mediterranei]
 gi|14572576|emb|CAC42478.2| response regulator protein [Amycolatopsis mediterranei]
 gi|299794432|gb|ADJ44807.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A V++G        G  +    S E    +    R D+  ++  L   G    E
Sbjct: 5   LVVEDDAAVREGLQLALRRQGHVVHTAESGELGIEVLVRHRPDLVVLDLMLP--GMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
             R +RA   VP+I ++        +   ++G DD V KP+  R + AR+ A+ RR    
Sbjct: 63  TCRRMRAAGPVPIIMLTARTDDFDIVAGLEAGADDYVAKPVEPRVLDARIRAVLRRAAVE 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +      G + +     +   +GE   L   E ++L  L    G+  ++ QI SA
Sbjct: 123 RPDGPAAAEERHGDLVIDRAALEVTKRGEPVSLTPTELKLLLELSRTPGQVYSRQQILSA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++   D   +  +V++ + +LR K+ +     + V + R  GY  
Sbjct: 183 VWD-HDYLGDSRLVDACVQRLRAKIEDVPAKPEHVQTVRGFGYRF 226


>gi|324327498|gb|ADY22758.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFE 224


>gi|254250739|ref|ZP_04944058.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
 gi|124879873|gb|EAY67229.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
          Length = 225

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L    R DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEERYDVIVLDVMLPV--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+  + RR   
Sbjct: 61  GVLKRLRETHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETEHLTVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220


>gi|261820614|ref|YP_003258720.1| BaeR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604627|gb|ACX87113.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 242

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +    +        +     N  +  EW++  +   +  ++  L G     
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVIEWVRQHS-PSLILLDLMLPGC--DG 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R IR  S VP+I ++        L   + G DD + KP   RE++ RV  + RR  
Sbjct: 70  LTICRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCG 129

Query: 121 VSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N+           + +   G      G+   L   E R+L+ L    GK  ++  +  
Sbjct: 130 WQNDGMKAAEKSETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLD 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +Y  +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 190 KLYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235


>gi|255099493|ref|ZP_05328470.1| two-component response regulator [Clostridium difficile QCD-63q42]
          Length = 233

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    R  +S +   ++       +
Sbjct: 5   LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I ++        +     G DD + KP    E++ARV ++ RR  + 
Sbjct: 65  VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 124

Query: 123 NNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N              + +    R   V      L  +E  +L +L +N+G+   K QI++
Sbjct: 125 NPAFITDTDCIIINGMIIDKTNRIVSVNNIPVQLTSKEFDLLAFLASNKGRVFTKKQIYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   + A +++ + S ISKLRKK+  +      + + R +GY  +
Sbjct: 185 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFN 230


>gi|315646765|ref|ZP_07899880.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277695|gb|EFU41019.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 232

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 97/226 (42%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +            +  +   + +       +  +  S I   ++       
Sbjct: 5   ILIIDDDVELCSLVKKCVSQVNLETDMAYNGQTGLLQVMNENDSYSLIILDVMLPNMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IR +S VP++ ++   S    +     G DD + KP    E++ARV ++ RR   
Sbjct: 65  QVLSEIRKYSNVPVLMLTAKGSEPDKVTGLSLGADDYLTKPFSINELIARVQSLIRRYTT 124

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N+R          I +  + R   V+ ++  L  +E  +L +L +N+G+   K QI++ 
Sbjct: 125 FNSRDSVSILIFKGIVIDKEIRTVHVEDKLIDLTGKEFDLLVFLASNKGRVFTKKQIYTQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++   D + ++N + S ISKLRKK+         + +   +GY  +
Sbjct: 185 VWN-DDYSFDDNNIMSFISKLRKKIEPNSEQPFYILTVHGVGYRFN 229


>gi|284046896|ref|YP_003397236.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951117|gb|ADB53861.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 251

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +++     F  +G  ++            SS   DV  ++  L G G    
Sbjct: 25  ILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSESFDVVLLDVAL-GSGPNGY 83

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +RA   V P+I ++   S    +   ++G DD V KP    E+ +R+ A+ RR  
Sbjct: 84  EVCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVLRRAG 143

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S++  E GPI +    R+  + GE   +   E  +LE LMA+ G+   + ++  
Sbjct: 144 PRPMGASDDLVEVGPIALDRARREVRMNGEPVHVTFSEFELLEALMADPGRLRNRQELLR 203

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           AI+G      +   ++ H+  LR+KL         + + R  GY +
Sbjct: 204 AIWGDSAY-RDPRAIDVHVRHLREKLEPEPDSPRHIVTVRGAGYRL 248


>gi|169794308|ref|YP_001712101.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           AYE]
 gi|184159890|ref|YP_001848229.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213159117|ref|YP_002321115.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB0057]
 gi|215481865|ref|YP_002324047.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB307-0294]
 gi|239502828|ref|ZP_04662138.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB900]
 gi|260553330|ref|ZP_05825944.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260557862|ref|ZP_05830075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|293610528|ref|ZP_06692828.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|299768353|ref|YP_003730379.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter sp. DR1]
 gi|301345738|ref|ZP_07226479.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB056]
 gi|301511640|ref|ZP_07236877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB058]
 gi|301596188|ref|ZP_07241196.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB059]
 gi|332850113|ref|ZP_08432500.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013150]
 gi|332871439|ref|ZP_08439956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013113]
 gi|332873325|ref|ZP_08441279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6014059]
 gi|169147235|emb|CAM85094.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           AYE]
 gi|183211484|gb|ACC58882.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|213058277|gb|ACJ43179.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB0057]
 gi|213987672|gb|ACJ57971.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB307-0294]
 gi|260405167|gb|EEW98665.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260408653|gb|EEX01958.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|292826872|gb|EFF85237.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|298698441|gb|ADI89006.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter sp. DR1]
 gi|322509805|gb|ADX05259.1| phoB [Acinetobacter baumannii 1656-2]
 gi|323519817|gb|ADX94198.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|325123908|gb|ADY83431.1| positive response regulator for the pho regulon,autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter
           calcoaceticus PHEA-2]
 gi|332730962|gb|EGJ62268.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013150]
 gi|332731476|gb|EGJ62766.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013113]
 gi|332738388|gb|EGJ69261.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6014059]
          Length = 236

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  L G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     +++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKTIDANGLILDPVSQRVSFGNSILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWGG-NVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227


>gi|69247505|ref|ZP_00604375.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|293379348|ref|ZP_06625492.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
 gi|293557181|ref|ZP_06675732.1| regulatory protein VanR [Enterococcus faecium E1039]
 gi|293563865|ref|ZP_06678296.1| regulatory protein VanR [Enterococcus faecium E1162]
 gi|293569177|ref|ZP_06680483.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|294614522|ref|ZP_06694434.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|294619788|ref|ZP_06699184.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|294623741|ref|ZP_06702569.1| regulatory protein VanR [Enterococcus faecium U0317]
 gi|68194830|gb|EAN09305.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|291588146|gb|EFF19988.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|291592615|gb|EFF24212.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|291593972|gb|EFF25450.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|291596695|gb|EFF27918.1| regulatory protein VanR [Enterococcus faecium U0317]
 gi|291600662|gb|EFF30963.1| regulatory protein VanR [Enterococcus faecium E1039]
 gi|291604176|gb|EFF33679.1| regulatory protein VanR [Enterococcus faecium E1162]
 gi|292641871|gb|EFF60037.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
          Length = 229

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++G   E   + + +E L       D+  +   ++      
Sbjct: 3   ILIADDDKEIVELLSIYVHNEGY--EAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR K
Sbjct: 61  MQVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       +  E   + +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 MQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 181 ERVWKQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|330828633|ref|YP_004391585.1| two-component system response regulator [Aeromonas veronii B565]
 gi|328803769|gb|AEB48968.1| Two-component system response regulator [Aeromonas veronii B565]
          Length = 228

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ DG        G +++     +    L +   ++ +A+   L       L
Sbjct: 3   ILLVEDDVMLGDGMQDALRHSGYTVDWLQ--QGLPALAALKSDEFAALILDLNLPDIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R    Q+P++ ++   +L   +   D+G DD + KP   +E+ AR+ A+ RR K
Sbjct: 61  SLLRKLRREGHQLPVLILTARDALDDRVVGLDAGSDDYMVKPFALQELNARLRALVRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G I ++ + +    QGE   L   E ++L+ L++  G+ ++K Q+  ++YG
Sbjct: 121 GQAQAVLEYGDILIYPESQQVTYQGEAVKLTPHEYKLLQELISQSGRVLSKDQLQQSLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE  E N VE HI  LRKK       D + + R +GY I
Sbjct: 181 -WDEGAESNAVEVHIHHLRKK----FYSDLIRNIRGVGYII 216


>gi|325957425|ref|YP_004292837.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|325333990|gb|ADZ07898.1| response regulator [Lactobacillus acidophilus 30SC]
          Length = 233

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V        G +G  +      + +E L+   +ED + I    +      +
Sbjct: 8   ILLVEDEEAVASFVKTELGFEGYQVIWAQ--DGKEALELFQKEDPTLILLDWMLPVYDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++   S        D G+DD + KP    E+ AR+  I RRLK 
Sbjct: 66  TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKK 125

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  +          GP+++     +     E   L  +E  ++  LM +  K  ++ ++ 
Sbjct: 126 TQEQNVAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   + N V+ +I  +R KL        + + R LGY +
Sbjct: 186 DVVWG-YDFVGQTNTVDVYIRTIRNKLGEPY-KKLIKTVRGLGYCL 229


>gi|283455696|ref|YP_003360260.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|306823278|ref|ZP_07456654.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801893|ref|ZP_07696008.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
 gi|283102330|gb|ADB09436.1| Two-component response regulator [Bifidobacterium dentium Bd1]
 gi|304553910|gb|EFM41821.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308221449|gb|EFO77746.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
          Length = 248

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 100/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 14  IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPD--IDGF 71

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 72  TVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 131

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 132 EQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+   +  D           +++KR +GY I
Sbjct: 192 W-QYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMI 243


>gi|58338068|ref|YP_194653.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227902754|ref|ZP_04020559.1| response regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58255385|gb|AAV43622.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227869417|gb|EEJ76838.1| response regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 228

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  ++  E    L ++    +  ++  +       
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPVTAYSGKEAITKLTTTPDIALMILDVMMPN--MSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR +
Sbjct: 61  IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 KQVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227


>gi|172058697|ref|YP_001815157.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991218|gb|ACB62140.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 222

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         DG  +                  + + ++  +   G    
Sbjct: 3   ILVVEDDLHIQRLIRETLEADGHRVTATADGNEAAAWIDGHLFEAAVLDVMVP--GRTGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL  ++R++ ++P++ ++    L    D F +G DD + KP    E++ R+ A+ RR + 
Sbjct: 61  ELCALLRSNQEIPILMLTALGELTDKRDGFSAGADDYITKPFDPEELVFRLHAVARRYQK 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     + G + +    +   +      +PRRE  +L  L +  G+  ++ ++   ++GL
Sbjct: 121 AAVPTMQFGEVTIDKRSQQLTIGTTRLTIPRREFELLHQLASFPGRVFSREELIEHVWGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D   ++  V+ HI +LR +L        +++ R LGY ++ 
Sbjct: 181 -DFMGDDRTVDVHIKRLRTRLHQ-TEAITIETVRGLGYRLEV 220


>gi|30021702|ref|NP_833333.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|75760689|ref|ZP_00740714.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206969120|ref|ZP_03230075.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218235232|ref|YP_002368413.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218898694|ref|YP_002447105.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228902100|ref|ZP_04066264.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228922307|ref|ZP_04085614.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228940685|ref|ZP_04103248.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228953868|ref|ZP_04115907.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228959784|ref|ZP_04121459.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228966495|ref|ZP_04127548.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228973603|ref|ZP_04134185.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980161|ref|ZP_04140475.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|229047283|ref|ZP_04192882.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229071099|ref|ZP_04204325.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229075494|ref|ZP_04208483.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|229080805|ref|ZP_04213323.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229098043|ref|ZP_04228993.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229104130|ref|ZP_04234804.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229111024|ref|ZP_04240583.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229117061|ref|ZP_04246443.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|229128872|ref|ZP_04257848.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229146167|ref|ZP_04274542.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229151795|ref|ZP_04279994.1| Two-component response regulator [Bacillus cereus m1550]
 gi|229179886|ref|ZP_04307232.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229191685|ref|ZP_04318664.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|296504106|ref|YP_003665806.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29897257|gb|AAP10534.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|74491807|gb|EAO54998.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206736161|gb|EDZ53319.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218163189|gb|ACK63181.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218541903|gb|ACK94297.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228591847|gb|EEK49687.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228603567|gb|EEK61042.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228631608|gb|EEK88238.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228637226|gb|EEK93681.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228654577|gb|EEL10439.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228666465|gb|EEL21925.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228672387|gb|EEL27672.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228679337|gb|EEL33540.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228685480|gb|EEL39408.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228702539|gb|EEL55007.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228707743|gb|EEL59927.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228712039|gb|EEL63988.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228724025|gb|EEL75371.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228779519|gb|EEM27772.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228786064|gb|EEM34061.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228793217|gb|EEM40767.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228799914|gb|EEM46856.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805836|gb|EEM52416.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228818929|gb|EEM64991.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228837362|gb|EEM82696.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228857526|gb|EEN02022.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|296325158|gb|ADH08086.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R   +
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFE 224


>gi|302528403|ref|ZP_07280745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437298|gb|EFL09114.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 226

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 99/224 (44%), Gaps = 7/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++I+D A V++G        G ++    + E           D+  ++  L   G   
Sbjct: 3   VVLVIEDDASVREGMELALRRQGHTVHTAATGEDGVAKLRERAPDLVVLDLMLP--GIDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R IRA  QVP+I ++        +   ++G DD V KPI  R + AR+ A+ RR  
Sbjct: 61  FETCRRIRALGQVPIIMLTARSDDFDVVAGLEAGADDYVVKPIEPRVLDARIRAVLRRTA 120

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                A   + G + +   G      GE  PL   E ++L  +    G+  +++Q+ +++
Sbjct: 121 AEPGAAGPEQHGDLVIDRAGMLVHKHGEQVPLTPTELKLLLEISRTPGQVHSRSQLLASV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G  D   +  +V++ + +LR K+ +     D V + R  GY  
Sbjct: 181 WG-HDYLGDSRLVDACVQRLRAKIEDVPARPDHVQTVRGFGYRF 223


>gi|251794533|ref|YP_003009264.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542159|gb|ACS99177.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 246

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 87/239 (36%), Gaps = 22/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G  +    + E    L    R D+  ++  +       L
Sbjct: 5   IIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKV--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+  +IR     P+I ++        L     G DD + KP   RE++ RV  I RR   
Sbjct: 63  EVCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGW 122

Query: 120 ----------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
                           + S        + ++   R   V      L  +E  +L  L   
Sbjct: 123 RSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMY 182

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            GK  +++Q+ + ++ +     +   V  H+ +LR+K+  N      + +   +GY +D
Sbjct: 183 PGKVFSRSQLLNQVWDIA-FDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKLD 240


>gi|56414448|ref|YP_151523.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197363369|ref|YP_002143006.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56128705|gb|AAV78211.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197094846|emb|CAR60379.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 213

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 89/207 (42%), Gaps = 13/207 (6%)

Query: 24  VSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPL 75
           +   GF  +E E++  +  +      D+  ++  L   G   L+  + ++  +    +P+
Sbjct: 6   LEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLP--GGSGLQFIKHLKREAMTRDIPV 63

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRV 133
           + ++     +  +   ++G DD + KP   +E++AR+ A+ RR+         E   + +
Sbjct: 64  VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSL 123

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
                          +   E ++L + M +  +  ++ Q+ + ++G  +  VE+  V+ H
Sbjct: 124 DPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVWGT-NVYVEDRTVDVH 182

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I +LRK L +      V + R  GY  
Sbjct: 183 IRRLRKALEHSGHDRMVQTVRGTGYRF 209


>gi|296445613|ref|ZP_06887568.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296256858|gb|EFH03930.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 224

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +    +      G +++     +   +L  +   D   ++  L    G  V
Sbjct: 3   LLVVEDDKDLNRQLVTALEQAGYAVDRAFDGDEGHFLGDTEPYDAVVLDIGLPKKDGVSV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  +  +A   +P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 63  LE--QWRKAGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEELLARMRALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+R+ +      V G    L   E R+L YLM + G+ V++ +I   +Y 
Sbjct: 121 GHATSEIVCGPVRLDTKAGRVVVDGNAVKLTSHEYRLLAYLMHHNGRVVSRGEIVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             D   + N VE  + +LRKKL    G D + + R LGY 
Sbjct: 181 Q-DFDRDSNTVEVFVGRLRKKL----GVDVIQTVRGLGYM 215


>gi|257884277|ref|ZP_05663930.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|293555117|ref|ZP_06674713.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1039]
 gi|293567467|ref|ZP_06678814.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1071]
 gi|294614256|ref|ZP_06694175.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1636]
 gi|294620698|ref|ZP_06699905.1| transcriptional regulatory protein ResD [Enterococcus faecium
           U0317]
 gi|257820115|gb|EEV47263.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|291589864|gb|EFF21665.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1071]
 gi|291592915|gb|EFF24505.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1636]
 gi|291599678|gb|EFF30688.1| transcriptional regulatory protein ResD [Enterococcus faecium
           U0317]
 gi|291601718|gb|EFF31974.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1039]
          Length = 238

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 103/237 (43%), Gaps = 23/237 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   V +     F ++G       +G   L+   +L++    D+  ++  L    
Sbjct: 3   ILMIEDNQSVSEMMQMFFLNEGWEATFKYDGKEGLDA--FLENPQHWDMITLDLNLPT-- 58

Query: 58  EKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              + + R IR   S VP+I ++   S    +   + G DD V KP     ++AR+ A++
Sbjct: 59  LDGMLVGREIRKVSSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALH 118

Query: 117 RRLKVSNNR-----------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANR 164
           RR +++  R            ET   ++ +  R+  +       L  +E  +L  L    
Sbjct: 119 RRSELAEAREEAAVSDDHFDIETSHFKMNTKTREAYLDNRPIEGLTPKEFDLLFTLAKKP 178

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++  +    +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 179 RQVFSREQLLELVWD-YQYFGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 233


>gi|229175534|ref|ZP_04303044.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228607930|gb|EEK65242.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 229

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V G    L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKKPLENEDDTLSIHGIYVHFPSRTVTVDGANITLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKCITTVVRTGYKFEGN 228


>gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus
           ATCC 53653]
          Length = 290

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + D        +G  +                R D   ++  L       L 
Sbjct: 68  LVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRTTRELRPDAVVLDVMLPD--MDGLT 125

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R   +VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 126 VLGRLRRELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGA 185

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  R+E     G + +  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 186 AAARSESVLAVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 245

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 246 W-SYDFGGQANVVELYISYLRRKI-DAGRSPMIHTRRGAGYLI 286


>gi|228990099|ref|ZP_04150071.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
 gi|228769627|gb|EEM18218.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
          Length = 228

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++   +  +  E ++   ++    I   ++       
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQQYAVTVAS--DGLEGMKQFNKQSFDLILLDVMMPNLNGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 71  EVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + N      I V  D     V     PL  +E  IL+ L+ N+ K + +  I   ++G
Sbjct: 131 QSTENHLFFKEIHVDCDAYKVYVNEVEIPLTAKEFEILQLLLQNKKKVITRESIVEKVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   E  ++++HI  +RKKL        + + + +GY ID
Sbjct: 191 -YEYHGETRMIDTHIKNIRKKLD----ISYIKTVKGIGYKID 227


>gi|82751956|ref|YP_417697.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|123549423|sp|Q2YZ24|HSSR_STAAB RecName: Full=Heme response regulator hssR
 gi|82657487|emb|CAI81929.1| two-component response regulator [Staphylococcus aureus RF122]
          Length = 224

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +   +    + +      S E    L    R D++ I+  +   G    +
Sbjct: 5   LVVDDDSRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVIDIMM--DGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN+    G + +     + +V  +   LP +E ++L  L     +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLATRPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|323702467|ref|ZP_08114131.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532606|gb|EGB22481.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 222

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 105/222 (47%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D    +   +  +++     E  + +  +   D+  ++  L  K  + +
Sbjct: 3   LLLVEDEQRLSDALAYILKKNNYAVDTAYDGETGQAMAETGIYDIIILDRMLPCK--EGV 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ + +R      P++ ++   +++  ++  D+G DD + KP    E+LARV A+ RR  
Sbjct: 61  EILKELRNQGIGTPVLMLTAKDAVENRIEGLDAGADDYLIKPFSTGELLARVRALGRRRN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++  ++ E   + +     +    G    L  +E  +LE  M N G+ + + QI   ++
Sbjct: 121 VQLGGDKLEAWGLILDPQRCEVTKDGTTIKLTLKESLLLELFMRNPGQVITREQILDRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GL D  VE   VE ++  LRKKL        +++ R +GY +
Sbjct: 181 GL-DSDVETGTVEIYVHYLRKKL--NFRDISIETIRGVGYCL 219


>gi|313889994|ref|ZP_07823631.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121652|gb|EFR44754.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
          Length = 242

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G   E          L  S   D   ++  L       +E
Sbjct: 6   LLVDDEEHILRLLDYHLHKEGYETELAEDGRTALKLAVSEHYDFILLDIMLPQ--LDGIE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IRA   + P++ +S        +   + G DD + KP   RE++ARV AI RR   
Sbjct: 64  VCKRIRAKGIETPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELMARVKAILRRTDK 123

Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +NR                  ++ +  +      +  L  +E  +L YL+ +    + +
Sbjct: 124 EDNRQNDRERFAEESWIINDFLIYPERHEVYKDKILLNLTPKEFELLLYLVKHPNMTLTR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++   I+G +D   E  +V+ HI KLR+K+ +       + + R  GY  
Sbjct: 184 ERLLERIWG-YDFGQETRLVDVHIGKLREKIEDDPKNPKCIKTIRGYGYQF 233


>gi|171743333|ref|ZP_02919140.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
 gi|171278947|gb|EDT46608.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
          Length = 243

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 100/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+   +  D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMI 238


>gi|147669577|ref|YP_001214395.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146270525|gb|ABQ17517.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 227

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +   A    +G  +      +           D+  ++  L        
Sbjct: 5   ILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPE--ISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R IR  S+VP+I ++    L   L   + G DD + KP   +E++ARV    RR + 
Sbjct: 63  DVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++      + +  + R  ++ G+   L   E  IL  L  + G+  ++ QI   + 
Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
                   E  ++SHI  LRKK+   L     + +   +GY +
Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKM 223


>gi|328948543|ref|YP_004365880.1| transcriptional regulator [Treponema succinifaciens DSM 2489]
 gi|328448867|gb|AEB14583.1| two component transcriptional regulator, winged helix family
           [Treponema succinifaciens DSM 2489]
          Length = 233

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 16/227 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D +L++D        DG     F  +            D++ ++  L         
Sbjct: 5   IIVEDNSLIRDAVSGYLKLDGYKTLEFGGVSGVLDAVKRETCDLAILDVMLPD--GSGFA 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IRA S +PLI ++   S    +  F+ G DD + KP   +E++ RV A+ RR   S
Sbjct: 63  LAKEIRAASDIPLIFLTAKDSESDRILGFELGADDYICKPFSAKELVLRVHALLRRTGKS 122

Query: 123 NNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +                + +        V G    L   E +IL YL +N G+ V++ Q+
Sbjct: 123 DGGKSAASGEWQSGNSAVFIDEGRHSVSVDGNPIELTSTEWKILLYLASNTGQVVSREQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  F     E  +++H++ LR K+    G   + + R  GY  
Sbjct: 183 LGECLNYF-FEGSERTIDTHMANLRSKI----GQQWISTVRGFGYRF 224


>gi|257064499|ref|YP_003144171.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256792152|gb|ACV22822.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 232

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 99/231 (42%), Gaps = 14/231 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  +      G+   GF +    +   S  R D+  ++  L   GE  
Sbjct: 1   MIYYVEDDQNIRELALYALSSQGLEACGFAAAGDFKKACSKLRPDLVLLDIMLP--GEDG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L +   IR ++    VP++ ++   +    +   DSG DD + KP    E+++R  A+ R
Sbjct: 59  LSILSWIRNNADMAEVPVMMLTAKGTEFDKVLGLDSGADDYLAKPFGMMELVSRCKALLR 118

Query: 118 RLKVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R  ++      +     GPI +     +         L  +E  +L  LM N G+   ++
Sbjct: 119 RPAMAHPADGRDGAVTIGPISLSVRDHEAFAGTAELDLTLKEFDLLRKLMENPGRAFTRS 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSI 220
           Q+   ++ +     E   V++HI  LR+KL +      + +++ R +GY  
Sbjct: 179 QLLKDVWDVS-FVGETRTVDTHIQTLRRKLNDAYPGAGNAIETIRGVGYRF 228


>gi|49081822|gb|AAT50311.1| PA0463 [synthetic construct]
          Length = 230

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G +            LQ     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALQAEGFATTWVTLAGEALALQERQPADLLILDVGLPV--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                E    +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+
Sbjct: 122 RPAALEEAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            G+  EA  E  ++SHI  LR KLR      + + + R LGYS
Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNERGEAIQTHRGLGYS 223


>gi|254423297|ref|ZP_05037015.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190786|gb|EDX85750.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 685

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++    +        +++  +   F      SA  D+  ++  L       +
Sbjct: 3   ILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPR--LDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R  +   P++ ++   +    +   D+G DD + KP+   E+ AR+ A+ RR +
Sbjct: 61  SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           VS  +  E G + +     +         L  +E  +LE  + N  +  +++ I   ++ 
Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD+   E+ V++H+  LR++L+       +++   +GY +
Sbjct: 180 TFDDPPLEDSVKAHVKGLRRRLKQAGADGWIENVYGMGYKL 220



 Score = 69.5 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 11/126 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD  ++      L    G S+      +  ++ Q+  + D   +   +   G   +
Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTL--ADSTKFWQTLTKVDPDLLILDIEMPGPDGI 460

Query: 62  ELPRIIRAHSQ-------VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           EL   +R   +       +P++ ++   +    +    +  DD V KPI   E++ R+  
Sbjct: 461 ELCHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINN 518

Query: 115 IYRRLK 120
              R +
Sbjct: 519 RLERAR 524


>gi|167750447|ref|ZP_02422574.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
 gi|167656598|gb|EDS00728.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
          Length = 255

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +G ++  + +++  + +  +  +D   I   ++       
Sbjct: 36  ILVADDEQKIREVIKEYAEYEGHTV--YEAVDGMQAVDMAKEQDFDIIIMDVMMPRLDGF 93

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + IR     P++ +S        L  F+ GVDD V KP   +E+LAR+ AI +R K 
Sbjct: 94  SACKEIRKFKNTPILMLSARTEEYDKLFGFEMGVDDYVVKPFSPKEVLARINAIIKRNKS 153

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N       +   + +    RD  + GE   L  +E  +L YL+ N+   + + ++   +
Sbjct: 154 GNEPVGETVKFEGLEINFTARDVFIDGEKANLTPKEYDLLFYLVKNKNIALTRNKLLEEV 213

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   ++  +++HI  LR  L        + + R +GY  
Sbjct: 214 WG-YDFFGDDRTIDTHIKMLRNNLGPY--RKFIVTLRGMGYKF 253


>gi|187928801|ref|YP_001899288.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|241114328|ref|YP_002973803.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
 gi|187725691|gb|ACD26856.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
 gi|240868901|gb|ACS66559.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
          Length = 228

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +      L  S   D+  ++  L        
Sbjct: 3   LLVVEDEPKTGEYLQQGLTEAGFVVDLARNGTDGRHLAMSGDYDLLLLDVMLPDV--DGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA    VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  QIVQSLRAAEQAVPVLFLTARDSVADRVKGLEMGADDYLVKPFAFAELLARVRTLLRRGT 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             VS++R +   + +    R     G+  PL  +E  +LE L+  RG+ + ++ I S ++
Sbjct: 121 GAVSSDRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLE 222


>gi|37548744|gb|AAN07017.1| putative response regulator [Bacillus subtilis]
          Length = 245

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   + +    +   +G+  +   ++             D+  ++  L     +  
Sbjct: 19  LIIDDEKEILELIKTVLIREGIDRVITASTARDGLAQFHQENSDLVILDIMLPD--GEGY 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR  S VP+I +S        +     G DD + KP   +E+  RV A  RR+  
Sbjct: 77  DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 136

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +    + GP  +     +    G    L  +E  ++ Y + +  + ++K  ++ A
Sbjct: 137 LQPSQTGTVIKKGPFELNQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQA 196

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G  D    +N V  HI +LR+K+ N     D + + + LGY  
Sbjct: 197 VWGE-DFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKF 240


>gi|152967758|ref|YP_001363542.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151362275|gb|ABS05278.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 225

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G+        +       + R D+  ++  L   G   +E
Sbjct: 6   LVVDDDTALAEMLGIVLQGEGLETRFCADGDQAVGAFRATRPDLVLLDLMLP--GTDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IRA S VP++ ++        +   ++G DD V KP   +E++ARV A  R   + 
Sbjct: 64  VCRQIRAESGVPIVMLTAKSDTVDVVLGLEAGADDYVVKPFKPKELVARVRARLRSAGER 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +   G      G   PL   E  +L  L     +   +  +   ++G +
Sbjct: 124 PPETLRIGDLTIDVAGHSVRRDGRSLPLTPLEFELLVTLARKPWQAFTRELLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEHPEIVVTVRGVGYR 221


>gi|238917425|ref|YP_002930942.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872785|gb|ACR72495.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 227

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G  +    + +    +  +   D++ ++  +       + 
Sbjct: 5   LVVDDEEDIRELVGIYIKNEGYQVYKAANGKDALDIIDNMSIDITILDVMMAD--MDGIT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           L   IR  S +P+I +S        +    +G DD + KP +  E++ARV A  RR K  
Sbjct: 63  LCMEIRKKSNIPIIMLSAKDQDMDKVIGLSAGADDYLAKPFNPVELIARVKAQLRRYKDF 122

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +N  E   + +  D     +  +   L  +E  ILE L  N+G   +   I+  +
Sbjct: 123 NNQKQSNILEYLDLTMNIDTHRVFLSSKEILLTPKEFAILELLWKNKGNVFSTEHIYDML 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +   +     NV+  HI  +R K+   L     + +   +GY  
Sbjct: 183 WSEEEAYDINNVIMVHIRNIRSKIETDLKNPKYIKTVWGVGYKF 226


>gi|187779416|ref|ZP_02995889.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
           15579]
 gi|187773041|gb|EDU36843.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
           15579]
          Length = 221

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFREGNFDLIILDVMLP--KIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV A+ RR   
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V G+   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNGKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +  V+++HI  LR+KL      D + + R +GY I+
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIE 220


>gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 226

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +    + +    L ++   D+  +    +  G   L
Sbjct: 4   ILLVEDEVKLARFIELELSYEGYQVSV--AYDGLTALTAARELDIDLVILDWMLPGLSGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQT--TLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R+    VP+I ++    +     +   D+G DD V KP    E+LARV A  RR
Sbjct: 62  EICRRLRSTGDQVPVILLTAKDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAHLRR 121

Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + ++  +  +   + +    R+      +  L  +E  +LEYL+ +  + + + +I   
Sbjct: 122 NQDADAGDILQFEDLSLNRRTREVFRGQRLIDLTAKEFDLLEYLLTHPRQVITRDRILEQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + N++E +I  LR KL        + + R +GY +
Sbjct: 182 VWD-YDFIGDSNIIEVYIRYLRLKLETNNEKRLIQTVRGVGYVL 224


>gi|309800488|ref|ZP_07694642.1| DNA-binding response regulator [Streptococcus infantis SK1302]
 gi|308115883|gb|EFO53405.1| DNA-binding response regulator [Streptococcus infantis SK1302]
          Length = 214

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 23/225 (10%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           + K+GY          +  FN  E  E  ++  + D+  ++  L       LE+ + IR 
Sbjct: 1   MTKEGYEV--------VTAFNGREALEQFEA-EQPDIIILDLMLPE--IDGLEVAKTIRK 49

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN------ 123
            S VP+I +S   S    +   + G DD V KP  +RE+ ARV A+ RR ++++      
Sbjct: 50  TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTELASADNQEP 109

Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + +  D    +  GE   L  RE  +L +L ++ G+ + +  +   ++G
Sbjct: 110 ETKLQSLQIGDLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITREHLLETVWG 169

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            +D   +   V+  I +LR+K+ +     + + ++R +GY +  N
Sbjct: 170 -YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 213


>gi|262042303|ref|ZP_06015468.1| two-component response regulator QseB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040367|gb|EEW41473.1| two-component response regulator QseB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 219

 Score =  228 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F +    +    SA  D + ++  L   G   L
Sbjct: 3   ILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLP--GIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R      P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + +  +     + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQSSSELHHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDDEVSSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|228939020|ref|ZP_04101619.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971901|ref|ZP_04132522.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978508|ref|ZP_04138885.1| Two-component response regulator vanR [Bacillus thuringiensis
           Bt407]
 gi|228781525|gb|EEM29726.1| Two-component response regulator vanR [Bacillus thuringiensis
           Bt407]
 gi|228787991|gb|EEM35949.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820639|gb|EEM66665.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 243

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 75  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A R +     +I
Sbjct: 135 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 195 YESVWNERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 242


>gi|227534581|ref|ZP_03964630.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631045|ref|ZP_04674076.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|227187830|gb|EEI67897.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239527328|gb|EEQ66329.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 246

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   ++ ++  E    L +    D++ +   ++      
Sbjct: 21  ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVT--NPDIALMILDIMMPNMSG 78

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 79  MDVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 138

Query: 121 -----VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 139 NEVTNTEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIF 198

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 199 ERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 245


>gi|138893859|ref|YP_001124312.1| response regulator [Geobacillus thermodenitrificans NG80-2]
 gi|196250567|ref|ZP_03149257.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265372|gb|ABO65567.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209916|gb|EDY04685.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 228

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   V +        +G  +    + +            +  ++  L       +
Sbjct: 5   LLLVDDEERVLEFMEPFLRQEGFEIVTAKTGKEALQKAKETNPSLVVLDWMLPE--MSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S V +I ++        +   + G DD + KP   RE+ AR+ ++ RR++ 
Sbjct: 63  DVCRELRKTSHVGIIMVTAKTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRRIEG 122

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +N+ E    G + +         +G    L   E ++L  L A  G   ++ Q+  +I+
Sbjct: 123 QDNQEELMKRGDLTISEAQCRVWKRGSEISLTPTEFKLLLTLAAKPGVVYSRLQLLQSIF 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              D   +E  V++HIS+LRKK+ +       + +    GY  
Sbjct: 183 -EDDLFNDERTVDAHISRLRKKIEDDPSRPVYIQTVYGFGYRF 224


>gi|17232815|ref|NP_489363.1| hypothetical protein all5323 [Nostoc sp. PCC 7120]
 gi|17134462|dbj|BAB77022.1| all5323 [Nostoc sp. PCC 7120]
          Length = 610

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+             +++     E    L S    ++  ++  L       +
Sbjct: 3   ILLVEDDDLLAQAMATTLTKQHYAVDIAADGEVAWELVSVCNYELILLDVVLP--KLDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R A  Q+ ++ ++   S    +   D+G DD V KP   +E+ AR+ A+ RR  
Sbjct: 61  SLCRQLRQAGYQMLILLLTAKDSQTDKILGLDTGADDYVVKPFDFQELSARIRALLRRGN 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S       G +R+     +     +   L  +E  ILE  + N  +  ++  I   ++ 
Sbjct: 121 TSLPPVLAWGSLRLDPSSCEVTYADKPLNLTAKEFSILELFLRNNQRTFSRGAIVEKLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              +  EEN ++SHI  LR+KL+     +  +++   +GY +
Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLQAAGANYAFIETVYGMGYRL 222



 Score = 47.6 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G++++     ++          D+  ++  +       +
Sbjct: 477 IMIVDDNLHLLNFLHRYLEALGITVKALKEPQYFWDTLIEFSPDLLILDLEIPH--INGI 534

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL +++R       +P++ + +  ++ T    F  G DD VNK +    ++A++     R
Sbjct: 535 ELCQVVRNDPYWQFLPVLFLVNNFNVNTFEKIFAVGADDWVNKSVIDSRLVAQILQHLER 594

Query: 119 LK 120
           + 
Sbjct: 595 MS 596



 Score = 43.0 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++I +   V +G +    + G+ ++  + +     + +S   DV  ++  +    E  
Sbjct: 354 LLLVISNDQQVFNGLLDEAVNLGIKVKITHDIAGSRTIIASLNPDVVILDIDIE---EDS 410

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           L L R +   S Q+P++ +++  +    ++   +G    + K
Sbjct: 411 LSLLRELSQLSPQIPILILTNQNNFIKRVEVARAGGCAFLPK 452


>gi|15893613|ref|NP_346962.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023165|gb|AAK78302.1|AE007546_8 Response regulator (CheY-like domain, HTH domain) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507735|gb|ADZ19371.1| Response regulator (CheY-like domain, HTH domain) [Clostridium
           acetobutylicum EA 2018]
          Length = 230

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +            ++   S +           ++  ++  L        
Sbjct: 4   ILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAAKEKNYELIILDLMLPE--IDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQIRKIKNTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHISRYER 121

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  ++  E   + +    R   V G+      +E  +L +L  N  +  +K ++
Sbjct: 122 LVNSSNKNLDDEIEIRGLNINKASRKVFVNGKESQFTAKEFDLLVFLAQNPDRVFSKEEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           F  I+G+ D   E   V  HI K+R+K+       + +++    GY  
Sbjct: 182 FDKIWGM-DSFGEIATVTVHIKKIREKIEKDTSNPEYIETVWGAGYRF 228


>gi|67921096|ref|ZP_00514615.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857213|gb|EAM52453.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 243

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    +   A  D+  ++  +        
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMP--KLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGAPGIPSSGVIAIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|331674568|ref|ZP_08375328.1| transcriptional regulatory protein QseB [Escherichia coli TA280]
 gi|331068662|gb|EGI40057.1| transcriptional regulatory protein QseB [Escherichia coli TA280]
          Length = 219

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDTVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|113474756|ref|YP_720817.1| two component transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110165804|gb|ABG50344.1| two component transcriptional regulator, winged helix family
           [Trichodesmium erythraeum IMS101]
          Length = 243

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 100/226 (44%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L++        +   ++       
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDV--VTAADGEEALETFHNTTPDLVVLDVMMPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGGNGIPSSGVIQVSTIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGY 231


>gi|329577270|gb|EGG58733.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1467]
          Length = 229

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++G  + + ++  E    L ++   D+  ++  +       
Sbjct: 3   ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPI--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQ+P+I ++   +    +    +G DD V +P +  E++ARV +I RR +
Sbjct: 61  MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTEPFNPLEVMARVKSILRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       +  E GP+ +  D  +   ++G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227


>gi|317484883|ref|ZP_07943773.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316923865|gb|EFV45061.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 228

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G +       +    L  S + D+  ++  L       L
Sbjct: 8   ILIVEDEQDIRELLAYNLEKEGYATVQAADGKEGLELARSRKPDLILLDLMLP--KMDGL 65

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +   S   ++P+I ++        +  F+ G DD V KP + RE+L R+ AI RR
Sbjct: 66  AVCRELERDSGTVRIPIIMLTARGEDVDRILGFELGADDYVVKPFNIRELLLRIRAILRR 125

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +  SN       + V        V G+   L   E R++E L+ N G+   + ++ +A
Sbjct: 126 QVMVESNPVLTRHGVSVDPAAHKVTVLGQDVELTATEFRLIEDLLRNAGRVRTREELLAA 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G +        V++HI +LR KL +    + +++ R +GY 
Sbjct: 186 VWG-YQFEGYARTVDTHIRRLRNKLGDA--AEIIETVRGVGYR 225


>gi|253689341|ref|YP_003018531.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755919|gb|ACT13995.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 242

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +    +        +     N  +  +W++  +   +  ++  L G     
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVDWVRQHS-PSLILLDLMLPGC--DG 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR  S VP+I ++        L   + G DD + KP   RE++ RV  + RR  
Sbjct: 70  LTLCRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCG 129

Query: 121 VSNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N+  +        + +   G      G+   L   E R+L+ L    GK  ++  +  
Sbjct: 130 WQNDGVKAIEKTETALVIDKGGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLD 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +Y  +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 190 KLYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235


>gi|56551153|ref|YP_161992.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761507|ref|ZP_04759595.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753198|ref|YP_003226091.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56542727|gb|AAV88881.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374414|gb|EER63911.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552561|gb|ACV75507.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 225

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 106/221 (47%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G +++     E   +L SS   D   ++  L       L 
Sbjct: 4   LIVEDEPTLSRQLRTTLEGAGYAVDLATDGEDGHFLGSSENYDAVVLDLGLPEV--DGLT 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R  +   ++P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR   
Sbjct: 62  VLDRWRKEGREMPVLVLTARDSWSDKVAGLDAGADDYLTKPFQTEELIARLRALIRRASG 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++    G +R+ +      + GE   L  +E ++L YLM ++GK V++T++   IY  
Sbjct: 122 NASSELTAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLMHHKGKVVSRTEMIEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + N +E  ++++RKKL    G D + + R LGY+++
Sbjct: 182 -DFDRDSNTIEVFVTRIRKKL----GQDVITTIRGLGYALN 217


>gi|254237307|ref|ZP_04930630.1| two-component response regulator CreB [Pseudomonas aeruginosa
           C3719]
 gi|126169238|gb|EAZ54749.1| two-component response regulator CreB [Pseudomonas aeruginosa
           C3719]
          Length = 229

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G +            LQ     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALLAEGFTTTWVTLAGEALALQERQPADLLILDVGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                E    +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+
Sbjct: 122 RPAALEGAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            G+  EA  E  ++SHI  LR KLR      + + + R LGYS
Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNERGEAIQTHRGLGYS 223


>gi|150019401|ref|YP_001311655.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905866|gb|ABR36699.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G  +E                 D+  ++  L   G+   
Sbjct: 4   ILIIEDDINIAELEKEYLQLNGYKVEIIQDGIQGLKKALIGTYDLIIVDLMLP--GKDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   ++P+I +S        +     G DD + KP    E++AR+ +   R + 
Sbjct: 62  EIVREVREKYEIPIIIVSARSEDIDKIKGLGFGADDYLTKPFSPAELVARIKSHMLRYER 121

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +      N      + + +D     V G+   L  +E  ++ +L +N      K Q+F 
Sbjct: 122 LSGNRPQLNIISHKALEIRTDSHKVFVNGKEVILTTKEYELMVFLASNPNIVFTKDQLFD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            I+G  D   +   V  HI KLRKK+    G  + +++    GY  +
Sbjct: 182 RIWGE-DYYGDTATVAVHIQKLRKKIEKDPGNPEYIETLWGTGYRFN 227


>gi|332798919|ref|YP_004460418.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696654|gb|AEE91111.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 232

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 100/229 (43%), Gaps = 15/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED----VSAIEAFLIGKGE 58
           ++IDD A +          +G+  +   +    + L   A ++    +  ++  L   G 
Sbjct: 6   LIIDDDAELCALMKKCIKQEGLEADI--TYTGRDGLTKIAEQNGAYCLVILDVMLP--GI 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              ++   IR  S VP++ ++        +     G DD + KP    E++AR+ ++ RR
Sbjct: 62  NGFQVLSEIRKGSMVPILMLTAKGDEIDKVTGLRLGADDYLTKPFSINELMARIESLIRR 121

Query: 119 LKVSNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               N   +   +      +  + R   V GE   L  +E  +L +L +N+G+   K QI
Sbjct: 122 YTTFNQSTQLDILNLKNMVIDKENRTVCVNGESVNLTGKEFDLLVFLASNKGRVFTKKQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++ ++   + A ++N + S ISKLRKK+   +     + +   +GY  +
Sbjct: 182 YTQVW-EGEYAFDDNNIMSFISKLRKKIEPDVEHPFYILTVHGVGYRFN 229


>gi|294791476|ref|ZP_06756633.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
 gi|294457947|gb|EFG26301.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
          Length = 249

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   ++D   A     G  +    +      +      D+  ++  L        
Sbjct: 9   IVVVDDEPSIRDLVSASLHFSGFDVTTATNGTEAIDVIMQTNPDLIVMDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR    + P++ ++     Q  +     G DD V KP    E++AR+ AI RR K
Sbjct: 67  TVTRRIRQQGMEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTK 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G +  L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQAEDDPIIRVADLEINEDSHDVTRHGMLIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+   +  D           + +KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKIDGVVYTDDEGNEQKVAPIIQTKRGMGYMI 238


>gi|227894008|ref|ZP_04011813.1| response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227864209|gb|EEJ71630.1| response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 239

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  ++  E    L ++    +  ++  +       
Sbjct: 14  ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPN--MSG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR +
Sbjct: 72  IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 131

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 132 KQVKDEKPDILEVGPLVINRDSHEVKTIDGKDIQLTALEFGILYLLASHPNRVFSADEIF 191

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 192 ERVWQQ-ESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 238


>gi|153932013|ref|YP_001382767.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936832|ref|YP_001386318.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152928057|gb|ABS33557.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932746|gb|ABS38245.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 232

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G       S    E L+     +V  I   ++      +
Sbjct: 6   ILIVDDEKEIRDLIDIYLTNEGYI--TLKSSNGIEALELLKTNNVHLIILDIMMPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E    IR    +P+I +S        +    +G DD + KP +  E+LARV +  RR   
Sbjct: 64  EACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   + +      I +     + ++  +   L  RE  ILE L  NRG   +  +I
Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIEKI 183

Query: 174 FSAIYGLFDEAVEE-NVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +  ++   +E ++  N V  HI KLR+K+         + +   +GY ++
Sbjct: 184 YELVWK--EEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVE 231


>gi|150388543|ref|YP_001318592.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948405|gb|ABR46933.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 240

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD  L+  G    F  +G  +      E    +  S   D   ++  L       + 
Sbjct: 20  LIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLP--KIDGIT 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR  S V +I ++        +   + G DD + KP + RE++AR+  + RR +  
Sbjct: 78  LCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEKG 137

Query: 123 N---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  +   + V    R      EV  L  +E  IL  L+ N+G+   + +IF  ++G
Sbjct: 138 EVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLVWG 197

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +   +   ++ H+  LR+KL++ K     +++K  +GY  
Sbjct: 198 --EPCYDTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYF 237


>gi|221633255|ref|YP_002522480.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
 gi|221155928|gb|ACM05055.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
          Length = 224

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          DG ++                  D+  ++  L   G    
Sbjct: 4   ILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLMLP--GTHGR 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++     +  ++  D G DD V KP    E+LARV A+ RR   
Sbjct: 62  DVCRALRLRHATPILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLRRASG 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G IR+  + R   +  E   L  RE  +L  L++  G+ +++ ++   ++  
Sbjct: 122 PPVRELVYGDIRIDREARTVFIDDEPVTLRPREFDLLLALVSQAGRIISRQRLLQQVWCD 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +       ++ H+++LR+KL+       ++S R +GY +
Sbjct: 182 HEIDEASRTLDVHVNRLRQKLQK--SRVRIESIRGIGYRL 219


>gi|187731798|ref|YP_001881793.1| DNA-binding transcriptional regulator QseB [Shigella boydii CDC
           3083-94]
 gi|187428790|gb|ACD08064.1| transcriptional regulatory protein QseB [Shigella boydii CDC
           3083-94]
          Length = 219

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRQGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|303229816|ref|ZP_07316596.1| putative response regulator ArlR [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303231718|ref|ZP_07318441.1| putative response regulator ArlR [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513667|gb|EFL55686.1| putative response regulator ArlR [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515576|gb|EFL57538.1| putative response regulator ArlR [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 224

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 107/223 (47%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIA-LFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L++D  ++ +G  A     + ++++  FN  +  +++ +S+  DV  ++  +      
Sbjct: 3   ILLVEDEEML-NGITAKYLRAENMTVDTCFNGQQAIDYVNTSS-YDVIVMDIMMPV--LD 58

Query: 60  VLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +     +R   +  P++ ++   SLQ  +   ++G DD + KP    E+ AR+ A+ RR
Sbjct: 59  GISALAQMRNEGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARR 118

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + N  + GP+ +    R  +  GE   L  +E  +L YL +N    +++ QI   +
Sbjct: 119 NARHAQNDIKVGPLTINVPQRTVKRDGEAITLTAKEFDLLYYLASNENIVLSRQQILDHV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+++ +I  LRKK+        + + R +GY +
Sbjct: 179 W-EYDYESYSNLIDVYIKDLRKKIDTDENVKLIQTVRGVGYVL 220


>gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073377|gb|ADJ62776.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++++D   + +       + G S    ++              +  ++  L  + G  +
Sbjct: 24  ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 83

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L   R  R   Q+ +I ++     +  +   D+G DD + KP   RE+ AR+ A+ RR  
Sbjct: 84  LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS 143

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +      GPI +        + G    +   E ++L++ +A+  +  +++Q+   ++
Sbjct: 144 PEHAQEVMSAGPITLDPASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     +EE  V+ H+ +LRK LR+      + + R +GY +
Sbjct: 204 GDH-VVIEERTVDVHVLRLRKALRDA--EYLIKTVRSVGYML 242


>gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 233

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G         +       S   DV  ++  L  +    L
Sbjct: 5   ILVVEDDHALVSLLTHNLEREGYETGVAMDGDEAWRKIQSGEWDVILLDVMLPHR--DGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      P+I ++        +   + G DD V KP   RE++AR+  I RR  
Sbjct: 63  EICRQLRQEKNYTPVIMLTARDDEIDRVVGLEIGADDYVTKPFSVRELMARIKVILRRRN 122

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         E GPI +  +  +  ++G+   L R+E  +L  L+ N+G+ + +  +   
Sbjct: 123 LDLYEGKPEIEAGPILIRPENYEVFLKGQKVDLTRKEFELLTLLVQNKGRVLKRDYLLQR 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN---KLGFDPVDSKRFLGYSID 221
           ++   D  V+  V++ H+SKLR+KL +   K G   +++ R +GY  +
Sbjct: 183 LWDYGD-TVKTRVLDVHVSKLREKLASYGLKGGG--IETVRGIGYKFE 227


>gi|89896612|ref|YP_520099.1| hypothetical protein DSY3866 [Desulfitobacterium hafniense Y51]
 gi|89336060|dbj|BAE85655.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G  ++             S   D+  ++  L        
Sbjct: 4   ILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGAYDILIVDLMLPQ--LDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R   ++P+I +S        +   D G DD + KP    E++AR+ +  +R + 
Sbjct: 62  EIIKEVRKKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRYER 121

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S        + + +      V G+      +E  +L +  +N     +K +IF 
Sbjct: 122 LTGKNQSPEVINHRGLEINTASHKVSVNGKEVQFTAKEYELLLFFASNPNILFSKERIFD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            ++G  +   +   V  HI K+RKK+ R+    + +++    GY  +
Sbjct: 182 LLWGA-EYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGYRFN 227


>gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 242

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L++  + +   +   ++       
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDV--VTAGDGEEALETFRKTEPDLVVLDVMMPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       I++ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGASGIPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|312968636|ref|ZP_07782845.1| transcriptional regulatory protein qseB [Escherichia coli 2362-75]
 gi|312286854|gb|EFR14765.1| transcriptional regulatory protein qseB [Escherichia coli 2362-75]
          Length = 219

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSQMGFSIDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|289432837|ref|YP_003462710.1| transcriptional regulator [Dehalococcoides sp. GT]
 gi|288946557|gb|ADC74254.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. GT]
          Length = 227

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +   A    +G  +      +           D+  ++  L        
Sbjct: 5   ILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPE--ISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R IR  S+VP+I ++    L   L   + G DD + KP   +E++ARV    RR + 
Sbjct: 63  DVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++      + +  + R  ++ G+   L   E  IL  L  + G+  ++ QI   + 
Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
                   E  ++SHI  LRKK+   L     + +   +GY +
Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKM 223


>gi|126697892|ref|YP_001086789.1| two-component response regulator [Clostridium difficile 630]
 gi|115249329|emb|CAJ67142.1| Two-component response regulator [Clostridium difficile]
          Length = 233

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    R  +S +   ++       +
Sbjct: 5   LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I ++        +     G DD + KP    E++ARV ++ RR  + 
Sbjct: 65  VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 124

Query: 123 NNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N              + +    R   V      L  +E  +L +L +N+G+   K QI++
Sbjct: 125 NPAFITDTDFIIINGMIIDKTNRIVSVNNIPVQLTSKEFDLLAFLASNKGRVFTKKQIYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   + A +++ + S ISKLRKK+  +      + + R +GY  +
Sbjct: 185 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFN 230


>gi|50843550|ref|YP_056777.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|50841152|gb|AAT83819.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|315107744|gb|EFT79720.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 232

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 95/230 (41%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++         G  ++            S    D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPR--LDGL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R++R++ + VP++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR +
Sbjct: 63  EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +        + +    R+         L R E  +L   + N  + + ++ + 
Sbjct: 123 PEPGPDEAPEHLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
             ++G FD     N +E +I  LR+K  +      + + R +GY + + N
Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDCEARLIHTVRGVGYVLREAN 231


>gi|297243684|ref|ZP_06927615.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
 gi|296888435|gb|EFH27176.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
          Length = 250

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 96/233 (41%), Gaps = 24/233 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   +           G    V+ +G +++   E L    + D+  ++  L    
Sbjct: 14  ILVVEDEPDLATAIAQRITAQGWRARVAADGASAVRAAEQL----KPDLIIMDVMLPI-- 67

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +E  R I +   VP++ ++   +    +    +G DD + KP   RE++AR AA+ R
Sbjct: 68  MDGIEATRRIISKMPVPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLR 127

Query: 118 RLKVSNNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R++ ++  A+T         G + +    R   +  +       E  +L  L  +     
Sbjct: 128 RVERASQIAKTMEHERTINFGSLIIRPRQRLVTLNDKEVHFTPTEFDLLATLARHPHTVF 187

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++   ++   D +     V+SHI  LR K+    G + + +   +GY+ +
Sbjct: 188 KREELLEEVWDWPDASG-TRTVDSHIKSLRHKI----GSEWIRTVHGIGYAFE 235


>gi|294787493|ref|ZP_06752746.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315226931|ref|ZP_07868719.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
 gi|294484849|gb|EFG32484.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315121063|gb|EFT84195.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
          Length = 245

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++   A     G  ++   S      + +    D+  ++  L        
Sbjct: 12  IVVVDDEPSIRELVSASLHFSGFEVKTAASGTEAIDVITKTDPDLIVLDVMLPD--IDGF 69

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR    + P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 70  TVTRRIRQQGIEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 129

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G++  L   E ++L YLM N G+ ++K QI   +
Sbjct: 130 EQVEDDPIIRVADLEINEDSHDVTRHGQLVELSPTEYKLLRYLMDNEGRVLSKAQILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKL-----RNKLGFD-----PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+     R++ G +      + +KR +GY I
Sbjct: 190 W-QYDWGGDAAIVESYISYLRKKIDGITYRDEDGTEHKVTPIIQTKRGIGYII 241


>gi|229043663|ref|ZP_04191369.1| Two-component response regulator vanR [Bacillus cereus AH676]
 gi|228725650|gb|EEL76901.1| Two-component response regulator vanR [Bacillus cereus AH676]
          Length = 243

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 75  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A R +     +I
Sbjct: 135 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 195 YESVWNERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 242


>gi|227879192|ref|ZP_03997064.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256844016|ref|ZP_05549503.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849420|ref|ZP_05554852.1| two-component system response regulator [Lactobacillus crispatus
           MV-1A-US]
 gi|262046087|ref|ZP_06019050.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380700|ref|ZP_06626749.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
 gi|312976908|ref|ZP_07788657.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
 gi|227861195|gb|EEJ68842.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256613921|gb|EEU19123.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256713536|gb|EEU28525.1| two-component system response regulator [Lactobacillus crispatus
           MV-1A-US]
 gi|260573417|gb|EEX29974.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290922740|gb|EFD99693.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
 gi|310896236|gb|EFQ45301.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
          Length = 228

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  ++  E    L ++   D+  +   ++      
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPVAAYSGKEAITKLTTT--PDIVLMILDVMMPNMSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR +
Sbjct: 61  IDVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 KQVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227


>gi|220905834|ref|YP_002481145.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219862445|gb|ACL42784.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 253

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 97/233 (41%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE--------AFL 53
            +L++D  L+++       ++G  +           + ++      AI+          L
Sbjct: 21  ILLVEDEELIRETVSLALMEEGYEVITAADGRQALDILNARVLHSQAIDSAGLDLMILDL 80

Query: 54  IGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +      L+L R+IR     +P++ +S   S    +   + G DD V KP   RE++AR 
Sbjct: 81  MLPYINGLDLCRLIRREGCTLPILMLSAKGSEIDRVVGLEVGADDYVTKPFGMRELVARC 140

Query: 113 AAIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            A+ RR +          +   ++++       V+G+   L  +E R+LE  M+   +  
Sbjct: 141 RALLRRQRAQTPPPVPILKFRDLQLYPQECRVLVRGQEVNLSPKEFRMLELFMSYPRRVW 200

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + Q+   I+G  D   +   V+ HI  LR+K+  +    + + + R  GY  
Sbjct: 201 PREQLLDKIWGT-DFVGDSKTVDVHIRWLREKIELDPSHPEYLLTVRGFGYRF 252


>gi|327193856|gb|EGE60733.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli CNPAF512]
          Length = 234

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G++     S             D+  ++  +       L
Sbjct: 5   ILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGNIDLIILDIGMPD--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  S +P++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 63  EVCRQIRKTSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKRSGN 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G I +   GR          +   E  ILE L++  G   ++ Q+  
Sbjct: 123 GAAPGRRHAALVAGEISLDRHGRTVMFGDSALAMTALEFAILEALLSRPGMVFSREQLMQ 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + YG     V +  ++SHI  +R K     G   + +   +G+ +
Sbjct: 183 SAYGAGTY-VADRTIDSHIRNIRAKFTAVGGTGIIATVHGIGFKL 226


>gi|242372014|ref|ZP_04817588.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W1]
 gi|242350283|gb|EES41884.1| hemin DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W1]
          Length = 234

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       ++ +    F S E           D++ ++  +  KG    E
Sbjct: 15  LIVDDDRKILDYVATHLINEHIRTHTFLSGETALHFLEKENVDIAIVDIMM--KGMDGFE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L + ++   ++P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR ++ 
Sbjct: 73  LCQKLKEDYELPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQIN 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  + G + +     +  V  +   LP +E +++  L++N      +  I   I+G F
Sbjct: 133 AESELKLGNLTLNQSYMELSVDSKTVNLPNKEFQLIFLLVSNPKHIFTRDDIIEKIWG-F 191

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   ++  V+ HI +LRK+L        + + R  GY +  N
Sbjct: 192 DYEGDDRTVDVHIKRLRKRLMQLEASVSIHTVRGQGYMVSQN 233


>gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
 gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
          Length = 282

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   +S +  E L+   + +  A+   L+  G   L
Sbjct: 50  ILIVEDDADIADVLSLHLRDERYEV--VHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 107

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 108 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 167

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 168 ALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDL 227

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 228 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 274


>gi|146307023|ref|YP_001187488.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575224|gb|ABP84756.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 222

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D   A     G +++         +  +S   D+  ++  L   G+  L
Sbjct: 3   LLLVEDHVPLADELTASLTRQGYAVDWLADGRDAAYQGASEPYDLIILDLGLP--GKPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  RA     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQEWRAGGLSTPVLVLTARGSWAERIEGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  + E   +++    +      EV  L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPQLEAAGLQLDESRQCVTSGDEVIDLTAAEFRLLRYFMLHPGQILSKSHLADHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   + NV+E H+++LR KL    G + ++++R  GY  
Sbjct: 181 DG-ETERDSNVIEVHVNRLRGKL----GRNVIETRRGQGYRF 217


>gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 248

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 105/231 (45%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +  F++   EE ++S  R+    I   ++       
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQV--FSATNGEEAIESFHRDSPDLIVLDVMLPKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 64  AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 122 SNNRAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           + + AET            G + V ++ R     GE   L   E  +LE L    GK V 
Sbjct: 124 TVSVAETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|172058846|ref|YP_001815306.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991367|gb|ACB62289.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 227

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            ++++D + +           G + +   +   ++ L ++  + D+  ++  +       
Sbjct: 5   ILIVEDDSKIARLLELELNHAGYATQV--AFNGKDGLVAAENDIDLVLLDVMMPE--LSG 60

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-- 117
            E+ R +R   + VP+I ++    +   +   D G +D V KP    E+LAR+  + R  
Sbjct: 61  FEVLRRLRGKGNPVPVILLTARGEVYDKVAGLDLGANDYVTKPFEIEELLARIRGLLRLT 120

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +  V  N+     + +  D  +         L  RE  +L YLM N+   + + QI + 
Sbjct: 121 TQAAVETNQLHYADVLLDLDRHEAFRNDVPLDLTPREFDLLSYLMENKEHVLTREQILNR 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D   E N+V+ +I  LRKK+        + + R +GY +
Sbjct: 181 VWG-YDYFGETNIVDVYIRYLRKKMDRSQSP-LIQTVRGIGYVL 222


>gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 243

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +       D+   +   +    ++ L+   + +  A+   L+  G   L
Sbjct: 7   ILIVEDDADIAEVLALHLRDERYEV--VHCANGDDGLRRLEQGNWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA  +  P+I IS   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMERYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +    R + G + +    R+  V G    L  RE  +L +   + GK  ++T +
Sbjct: 125 ALSRDTRSEAGRVDVGGLTLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRTDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKL 231


>gi|239993470|ref|ZP_04713994.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii ATCC 27126]
          Length = 224

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D + +     AL   +G S++  ++ E   +L      D++ ++  +        
Sbjct: 3   ILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYSYDLAIVDIGMP--KLDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R  R A    P++ ++     Q  ++  D+G DD + KP H+ E+LAR  A+ RR  
Sbjct: 61  EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   + GPI + +   +  + G+   L   E +++EYLM N  K ++KT++   IY 
Sbjct: 121 GQANPTIQFGPISLDTVSEELSLNGQALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  ++ NV+E  + +LRKKL       P+++ R  GY I+
Sbjct: 181 Q-DFDLDSNVIEVFVGRLRKKLDPTGELKPIETLRGRGYRIN 221


>gi|163794790|ref|ZP_02188760.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
 gi|159180063|gb|EDP64588.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
          Length = 229

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D           F + G +++         +L +    D   ++  L   G   L
Sbjct: 5   ILIVEDDIETAAYMERGFVEQGYAVDRTADGREGLFLATGQDYDAVVLDRMLP--GLDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + +RA   Q P++ +S   +L   +    +G DD + KP    E+ AR+ A+ RR  
Sbjct: 63  SVLKAVRAAGVQTPVLILSAMGALDERVRGLRAGSDDYLVKPFAFVELHARIDALIRRSA 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +R     + +    R     G   PL +RE ++LEYLM + G+ V +T +   
Sbjct: 123 AGTEAPPSRLVVADLELDLLSRKVTRAGRPIPLQQREFQMLEYLMRHAGRVVTRTMLLEG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +    + NV++ HIS+LR+K+        + + R  GY +
Sbjct: 183 VWN-YHFDPQTNVIDVHISRLRQKVDKDFDSPLIHTVRGSGYML 225


>gi|297625540|ref|YP_003687303.1| two component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|32452353|emb|CAD59399.1| putative two-component system regulatory protein [Propionibacterium
           freudenreichii subsp. shermanii]
 gi|296921305|emb|CBL55858.1| two component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 242

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + +DD   + +        +G       +             D   ++  L       LE
Sbjct: 21  LAVDDENSLTELLSMAMRYEGWEPTTAATGSDAVRAARDTNPDAIVLDMMLPDF--DGLE 78

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    VP+I ++   ++   +    +G DD V KP    E++AR+ ++ RR   
Sbjct: 79  VMRRVRAEQPDVPVIFLTAKDAVNDRIVGLTAGGDDYVTKPFSVEELMARLRSLLRRSGA 138

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R+E     G + +  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 139 TSKRSESELIVGDLVLDEDSHEVTRGGDEIHLTATEFELLRYLMRNPKRVLSKAQILDRV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 199 WN-YDFGGQANVVELYISYLRKKI-DAGREPMIHTMRGAGYVL 239


>gi|150016009|ref|YP_001308263.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902474|gb|ABR33307.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 233

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G  +   ++    + ++ +  E  S +   L+  G    
Sbjct: 6   ILIVDDEEHIVELLHFNLVNAGYEV--LSANNGIDAVKIAKAEKPSLLLLDLMLPGMDGF 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + I+  S+     +I ++        +   + G DD + KP   RE+LARV A+ RR
Sbjct: 64  DVCKEIKRDSEMKKTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRR 123

Query: 119 L----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  ++   +  ++V  +  +  V      L  +E  +L+ L+ N+G+ + +  + 
Sbjct: 124 TSSFNEAEDDVYNSENLKVDFERHEVYVNDRKVDLTLKEFELLQILIKNKGRILKRETLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             I+G ++   E   V+ HI  LRKK+  +      +++ R +GY  +
Sbjct: 184 DKIWG-YEYIGETRTVDVHIRYLRKKIEEDDKNPRFIETIRGVGYRFN 230


>gi|154506023|ref|ZP_02042761.1| hypothetical protein RUMGNA_03565 [Ruminococcus gnavus ATCC 29149]
 gi|153793522|gb|EDN75942.1| hypothetical protein RUMGNA_03565 [Ruminococcus gnavus ATCC 29149]
          Length = 226

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 95/218 (43%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +++G       +G  +    + E    L  ++  D+  ++  L        
Sbjct: 4   ILIIEDDADLREGLEYTLSGEGYQILTAENAERGRKLWKTSSCDLILLDCNLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR  S V ++ ++   +    +   + GVDD ++KP     + AR+  +  R K 
Sbjct: 62  SLCSEIRKSSDVFILMLTARDTELDEVKALEMGVDDYMSKPFSIAVLKARIKKLLSR-KS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 +  IR+         + EV  L + E ++L Y + N G+ ++K QI   I+   
Sbjct: 121 EKQWISSNGIRLDKSSCQVICKEEVLELSKIEYKLLLYFLENPGQILSKEQILERIWDKD 180

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            + V+EN V  +I +LR+K+  +      + +   LGY
Sbjct: 181 GKFVDENTVSVNIRRLRRKIEADPQNPQWIQTVHGLGY 218


>gi|237750120|ref|ZP_04580600.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229374307|gb|EEO24698.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 224

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNS----LEFEEWLQSSAREDVSAIEAFLIGK 56
           M  +++D   +++          +  +GF +     E    L      ++  ++  L  +
Sbjct: 1   MIFILEDEHAIRELIEYALNTHSLESKGFATPSAFFEALNALSEDCMPELILLDMMLPEQ 60

Query: 57  -GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
            G +VL++ +  ++   +P+I ++   S    +   + G DD V KP    E+LAR+ A+
Sbjct: 61  DGIEVLKILKKKQSTKHIPVILLTAKSSELDKVYGLNMGADDYVTKPFGVLELLARINAL 120

Query: 116 YRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR +  + +      I +    R     G    L  +E  +L   +AN      + Q+ 
Sbjct: 121 LRRTRGLSLDEYSFQEITLNPKTRIVSSNGVPINLTYKEFEMLMLFLANPHLVFTREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +I+G      +   V+ HI+ LR KL        + + R +GY I
Sbjct: 181 ESIWG---SEFQTRTVDVHINTLRTKLGESG--KYIQTVRGVGYKI 221


>gi|148378368|ref|YP_001252909.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153939020|ref|YP_001389733.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168177708|ref|ZP_02612372.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168181227|ref|ZP_02615891.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|170754669|ref|YP_001780018.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|170758790|ref|YP_001785702.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947596|ref|YP_002802687.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148287852|emb|CAL81918.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152934916|gb|ABS40414.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169119881|gb|ACA43717.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169405779|gb|ACA54190.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182670720|gb|EDT82694.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182675277|gb|EDT87238.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226842593|gb|ACO85259.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 232

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 99/231 (42%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++D       ++G  +L+  N +E  E L++    +V  I   ++      
Sbjct: 6   ILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKT---NNVHLIILDIMMPKMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E    IR    +P+I +S        +    +G DD + KP +  E+LARV +  RR  
Sbjct: 63  IEACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYI 122

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +      I +     + ++  +   L  RE  ILE L  NRG   +  +
Sbjct: 123 KLNNSNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIEK 182

Query: 173 IFSAIYGLFDEAVEE-NVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           I+  ++   +E ++  N V  HI KLR+K+         + +   +GY ++
Sbjct: 183 IYELVWK--EEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVE 231


>gi|78485313|ref|YP_391238.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78363599|gb|ABB41564.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 226

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D G      ++         +   D+  ++  L   G+  L
Sbjct: 6   ILIVEDEIKIANIVQEYLQDSGFKTVCIDNGSDVLSWVQNHPVDLILLDIMLP--GKDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQVP+I ++        +   + G DD + KP   RE++ARV A+ RR  +
Sbjct: 64  QVCKEVRTISQVPIIMLTAKVEEIDRILGLELGADDYICKPFSPRELVARVKALLRRSSL 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 T    +  +      QG+   L   E  IL+ L  + G+  +++ +  +IY   
Sbjct: 124 RQENHSTEDWHMDEERYQVRYQGKTVNLSMVEFAILKLLSTSPGRIYSRSHLIGSIY-PD 182

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +  V +  V+SHI KLR KL  +L   + + S   +GY  +++
Sbjct: 183 NRVVSDRTVDSHIKKLRHKLAEELTSKELIYSVYGVGYKFEFH 225


>gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 232

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 99/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
            ++I+D   +++    L  + G  +E   + + EE LQ   +  D+  I+  +       
Sbjct: 4   LLIIEDDVTIRNALRILLENQGYFIE--EAHDGEEGLQKFDSTFDLLIIDIMMPN--ISG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R IR  S VP++ ++        ++   +G DD + KP  + E++AR+ A+ RR +
Sbjct: 60  IDVCRKIREKSYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCR 119

Query: 121 VSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V +N            E   + + +   +    G    L  +E +IL  L+++  K  + 
Sbjct: 120 VYDNADASDTTASSTIERCGLTLDTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFST 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             IF +++         N +  HI  LR KL    G    + +    GY  +
Sbjct: 180 QNIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFE 231


>gi|229198983|ref|ZP_04325670.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228584529|gb|EEK42660.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 229

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             R L+  ++      I V    R   V      L   E  IL YLM N+G  + + Q+ 
Sbjct: 123 TKRLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SKIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|227329104|ref|ZP_03833128.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 242

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +    +        +     N  +  EW++  +   +  ++  L G     
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATYWLPNGNDVVEWVRQHS-PSLILLDLMLPGC--DG 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR  S VP+I ++        L   + G DD + KP   RE++ RV  + RR  
Sbjct: 70  LTLCRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCG 129

Query: 121 VSNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N+  +        + +   G      G+   L   E R+L+ L    GK  ++  +  
Sbjct: 130 WQNDGLKAAEKTETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLD 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +Y  +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 190 KLYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235


>gi|21222153|ref|NP_627932.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|7211008|emb|CAB76988.1| putative response regulator [Streptomyces coelicolor A3(2)]
          Length = 256

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +         G  ++            +  R D+  ++  L   G   L
Sbjct: 31  ILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLP--GMDGL 88

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RRL 119
           E+ R +R    VP+I ++        +   + G DD V KP   RE++ RV ++    R 
Sbjct: 89  EVCRRLRGQGPVPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVLRRTRP 148

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        +      R     G    L  RE  +L + + + G+  A+ ++   ++G
Sbjct: 149 APAPRPPSAAGLTADPAARRATKDGAELALTLREFDLLAFFLRHPGRAFAREELMREVWG 208

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
              +  + + V  H+ +LR K+ +       + +   +GY  D
Sbjct: 209 W--DFGDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFD 249


>gi|332655319|ref|ZP_08421059.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332515824|gb|EGJ45434.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 245

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   +          +G  +++ +N     E L++  + D+  I   ++      
Sbjct: 18  ILICDDDKDIVSALDIYLSSEGYKTVKAYN---GNEALRAVEQNDIHLILMDIMMPELDG 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +     +R  S VP+I ++        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 75  IRATAKLREGSNVPIILLTAKSEDNDKILGLNIGADDYITKPFNPLEVIARVKSQLRRYT 134

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +      GPI +    +   V GE   L   E  IL+ LM + G+  +  QI+
Sbjct: 135 ALGGAEKAPGLLSVGPISMDDGAKLVTVDGEPVSLTPIEYNILKLLMTHPGQVFSSAQIY 194

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++        EN V  HI  LR+K+  N      +     LGY +D
Sbjct: 195 EQVWNDPAY-GSENTVAVHIRHLREKIEINPAEPRYLKVVWGLGYKMD 241


>gi|270284725|ref|ZP_05966555.2| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium gallicum DSM 20093]
 gi|270276295|gb|EFA22149.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium gallicum DSM 20093]
          Length = 226

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 87/228 (38%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G      +         ++ + D+  ++  L       LE
Sbjct: 2   LVVEDEPTLATAIAQRLTAEGWIARVASDGASAVQASTTLKPDLVIMDVMLPV--MDGLE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR++ +
Sbjct: 60  ATKRIVAMRPVPVLMLTARDDETDKIIGLGAGADDYMTKPFSMRELVARCKALLRRVERA 119

Query: 123 ---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        + G + +    R   + GE   L   E  +L  L       + + Q+
Sbjct: 120 KVIAQNSQNEKILDYGSLVIDPTQRVVTLNGESVHLTPTEFDLLVTLARKPKSVLTREQL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 180 LEEVWDWVDASG-TRTVDSHVKALRHKL----GSSTIRTVHGVGYAFE 222


>gi|226949267|ref|YP_002804358.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844404|gb|ACO87070.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 221

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLP--KIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV A+ RR   
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE LM+N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILMSNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +  V+++HI  LR+KL      D + + R +GY I+
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIE 220


>gi|145596986|ref|YP_001161283.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145306323|gb|ABP56905.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 228

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D   + D        DG  +      +         R  V  ++  L   G   
Sbjct: 10  LVLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALP--GLPG 67

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ R +R      P+I ++        +   + G DD V KP   RE++ARV A+ RR+
Sbjct: 68  TEICRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRV 127

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +  D R     G+   L   E  +L +LMA  G+   + ++ + +
Sbjct: 128 AGPPPGRPRIVGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLAGV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +        V+ H++++R KL        + + R +GY++D
Sbjct: 188 WG-YAVPAGTRTVDVHVAQVRAKL---GPESVIRTHRGVGYAVD 227


>gi|331005798|ref|ZP_08329157.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC1989]
 gi|330420435|gb|EGG94742.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC1989]
          Length = 251

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 106/224 (47%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  ++++        +  S++         +L S    D++ I+  L       +
Sbjct: 3   LLLAEDEKILRENLQQFLTRNSYSVDSAEEGREGLFLGSEHPYDIAIIDIGLPE--MDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R H    P++ ++   S Q  +   ++G DD + KP H+ E+LAR+ A+ RR K
Sbjct: 61  ELIKQLRQHKKDFPVLILTARDSWQDKVIGLEAGADDYLAKPFHNEELLARLNALTRRSK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G I + +  +   +  +   L + E   LEYL  N+ + ++KT++   +Y 
Sbjct: 121 GLASPEIHIGEILINTAKKLVSINNQDITLTQYEYNTLEYLALNKARVISKTELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D  ++ NV+E  I +LRKKL       P+ + R  GY +  N
Sbjct: 181 Q-DFDLDSNVIEVLIGRLRKKLDPNNIHKPIVTHRGQGYRLTEN 223


>gi|323701248|ref|ZP_08112923.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533850|gb|EGB23714.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 232

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G  +      E    +  + + D+  ++  +       L
Sbjct: 5   ILIADDDHRIVKIVTHCLEQEGYRVVAAQDGEEAVRMAGALKPDLVILDIMMP--KLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + I+  + VP++ +S    L   +  F  GVDD   KP    E+  RV A+ RR K 
Sbjct: 63  EACQKIKGAADVPIVILSAKDDLVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKG 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + +    R   +  +   L  +E  +L  + ++  +  ++ Q+  
Sbjct: 123 VTDRKKGQEILNYPHVYIELATRQVRIWEQEISLTAKEFDLLWLMASHPNQVFSRLQLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            I+       +E+ V  HI +LR+K+ RN    + + +   +GY  +
Sbjct: 183 QIWESR-YEGDEDTVTVHIRRLRRKIERNPAQPELIKTVWGVGYKFE 228


>gi|291456488|ref|ZP_06595878.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM
           20213]
 gi|291381765|gb|EFE89283.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM
           20213]
          Length = 240

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +                 + D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAALQLKPDLVIMDIMLPV--MDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR++ +
Sbjct: 74  ATKRIVAERPVPVLILTARDDETDKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133

Query: 123 ---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        + G + +    R   V GE   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKILDFGSMVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G D + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GADMIRTVHGVGYAFE 236


>gi|144898432|emb|CAM75296.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Magnetospirillum gryphiswaldense MSR-1]
          Length = 225

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G +++  ++     +L ++ R D   ++  L   G   L
Sbjct: 3   ILIIEDDQEASAYLAKGLKEAGHTVDQAHNGNDGLFLATTERYDSMIVDRMLP--GVDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR A +  P++ +S    +   +    +G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TIVQTIRGAGNTTPVLILSALGKVDDRVKGLKAGGDDYLVKPYAFAELLARIEALGRRTS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S    R +   + +    R     G    L  RE R+LEYL+ + G+ V +T +   ++
Sbjct: 121 ASQPETRLKVEDLEMDLLARTVTRSGRDIDLQPREFRLLEYLLRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + N+++ HIS+LR+K+        + + R  GY++
Sbjct: 181 -EYHFDPQTNLIDVHISRLRQKVDKDFDQALIHTVRGAGYTL 221


>gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 229

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +   +S +      S    D+  ++  L         
Sbjct: 8   LVVDDEEAITDLVAMALRYEGFDVSAAHSGQAALTQVSREPPDLLVLDVMLPD--IDGFA 65

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R A   VP + ++   + +  +     G DD V KP    E++ARV AI RR  +
Sbjct: 66  VCQRLRNAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRRAGM 125

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++          + +  + R+    G +  L   E R+L YL+ N  K + + Q+   ++
Sbjct: 126 ADGAPEPLRFADLELDPETREVRRAGRLVELTVTEYRLLHYLLVNARKVLTRAQLLDHVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D   +  V+E+++S LR+K+ +      + + R +GY +
Sbjct: 186 G-HDFGGDARVLETYVSYLRRKIDDAP-PALIHTVRGVGYVL 225


>gi|322514296|ref|ZP_08067353.1| two component response regulator [Actinobacillus ureae ATCC 25976]
 gi|322119815|gb|EFX91839.1| two component response regulator [Actinobacillus ureae ATCC 25976]
          Length = 221

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG           ++ F   +       S + D   ++  L       L
Sbjct: 3   ILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFDALFSTQYDAVVLDLSLP--KMDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           ++ +  R  H  +P++ ++   +L   +  F+SG DD + KP    E++ R+ A+  RR 
Sbjct: 61  DILKRWRKEHQDIPVLILTARDTLDDRILGFNSGADDYLCKPFALMEVVVRLQALVRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S++    G +R+ ++     +      L  +E ++L+  ++N+ K + ++ I   +Y 
Sbjct: 121 QQSSSEIVIGSLRIDNNTHSATLADNPIILTSKEFQLLQLFVSNKDKVLTRSSIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  V  N +E +I  LRKKL    G   + +   +GY +
Sbjct: 180 SWDNDVGSNTLEVYIHNLRKKL----GKSWIKTVHGVGYRL 216


>gi|126652917|ref|ZP_01725060.1| Two-component response regulator ycbL [Bacillus sp. B14905]
 gi|126590337|gb|EAZ84458.1| Two-component response regulator ycbL [Bacillus sp. B14905]
          Length = 230

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +G  +   N+ E       +   D+  ++  +       L
Sbjct: 5   ILLVEDDEAIREMVANFLLLEGFEVTTANNGEEALQYCLNQTFDLVILDIMIP--KLNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IR  + +P+I +S   S          G DD + KP    E  ARV A+ RR   
Sbjct: 63  EVLKVIREQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 122

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + +        G +++          G+   L  +E  IL+  + NR +   K QI+
Sbjct: 123 YAGQTDHKQDVVVIGDLKIDIVNFSINKSGKEVKLTSKEFAILKLFVTNRNRVFTKEQIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+       +EN++  HI +LR+K+ +       + +   +GY  +
Sbjct: 183 QLIW-KDAYYGDENIINVHIRRLREKIEDDPSTPQYIKTLWGIGYKFE 229


>gi|300781686|ref|ZP_07091540.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300533393|gb|EFK54454.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 232

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +      +         + D++ ++  +       L
Sbjct: 3   ILVVDDEQAVRESLRRSLQFNGYDVALAKDGQEALASIEQEQPDLTVLDVMMPQ--LDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R+     P++ ++    +   +   D+G DD + KP    E+LARV ++ RR +
Sbjct: 61  GVCRELRSSGYDRPILMLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAR 120

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +      + +    RD         L R E  +L  L+ N  K + + +
Sbjct: 121 ADAIQQDAEGGSELSFEDLHLDISSRDVRRGDRHISLTRTEFSLLHLLLRNPRKVLTRQK 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G  +     N +E +I  LR+K         + + R +GY +
Sbjct: 181 ILEEVWG-HEFPSSGNALEVYIGYLRRKTEADGEPRLIHTVRGVGYVM 227


>gi|167463992|ref|ZP_02329081.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 230

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        DG                S+ + D+  ++  L   G    
Sbjct: 5   ILIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLMLP--GIDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  ++VP++ ++        +     G DD ++KP    E++ARV A   + + 
Sbjct: 63  EICRKIRGKTEVPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYER 122

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V +   + GP+R+        +         +E  +L +L++N     +K Q++
Sbjct: 123 LTTGSVVRSEEVQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             I+G+ D   +   V  HI++LR+K+  +      + +    GY
Sbjct: 183 ERIWGM-DAIGDLKTVAVHINRLREKIEKDPQNPVYIQTVWGSGY 226


>gi|218236009|ref|YP_002366587.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218163966|gb|ACK63958.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 232

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A R +     +I
Sbjct: 124 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++      +  N V  HI++LR K+  N      + +   +GY I+
Sbjct: 184 YESVWNERAYEIN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|163942563|ref|YP_001647447.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864760|gb|ABY45819.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 233

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +    + + EE L+   + DV  I   ++      +
Sbjct: 6   ILIVDDEKEIRKLIAIYLKNEGYEV--LQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N  E G I++    R   +  +   L  RE  +LE L  N+G  +   QI+
Sbjct: 124 MSGASVKDENVFEVGDIKINIATRQVIIANKEVKLTPREFEVLELLARNQGMVLNAEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 ERVW-KEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 232


>gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021]
 gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Sinorhizobium meliloti
           1021]
 gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 223

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIVEDDTNLNRQLADALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPE--MDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    RA  +  P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ + G    V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVAGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKK+    G D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKI----GNDLIETVRGLGYRM 216


>gi|238797563|ref|ZP_04641060.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii
           ATCC 43969]
 gi|238718560|gb|EEQ10379.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii
           ATCC 43969]
          Length = 220

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 107/221 (48%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G      ++G + +   +    + L  S++  +  ++  L  +   VL
Sbjct: 3   LLIVEDDELLQRGIAMALTNEGYACDCTGTAAEAQSLLQSSQYSMVILDLGLPDQDGAVL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR + 
Sbjct: 63  -LRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  +   + +    +   +Q +   +  +E  IL  L+   G+ V +  +   +Y  
Sbjct: 122 QSDNLVQQDDLSLNLSTQQVCLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYTW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 182 NDDLG-SNTLEVHIHNLRRKL----GKDRIRTVRGIGYRLE 217


>gi|228941849|ref|ZP_04104396.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974774|ref|ZP_04135340.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981369|ref|ZP_04141669.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
 gi|228778569|gb|EEM26836.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
 gi|228785177|gb|EEM33190.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818061|gb|EEM64139.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942455|gb|AEA18351.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|153815072|ref|ZP_01967740.1| hypothetical protein RUMTOR_01289 [Ruminococcus torques ATCC 27756]
 gi|145847640|gb|EDK24558.1| hypothetical protein RUMTOR_01289 [Ruminococcus torques ATCC 27756]
          Length = 211

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 106/211 (50%), Gaps = 9/211 (4%)

Query: 19  FGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
              D ++ EG+  LE  + +++       ++++ +   ++       ++ R IR  S+VP
Sbjct: 4   LVKDFLTREGYAVLEAGDGMEAMDIFYEDKEIALVILDVMMPKMDGWQVCREIRETSKVP 63

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIR 132
           +I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR     + +  E G I+
Sbjct: 64  IIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTLGNTAGDVIEAGDIK 123

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +       ++  ++  L  +E  +L Y + N+G  +++ +I + ++  +D   +   +++
Sbjct: 124 IDKAAHIVKINDKMIDLSYKEFELLSYFVENQGIALSREKILNNVWN-YDYFGDARTIDT 182

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           H+ KLR KL ++   + + +   +GY  + N
Sbjct: 183 HVKKLRSKLGDRG--EYIKTIWGMGYKFEVN 211


>gi|126702213|gb|ABO26810.1| PmrA [Tatlockia micdadei]
          Length = 222

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 9/214 (4%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AH 70
            D   A     G  ++     +       S   ++  ++  L       L   + IR   
Sbjct: 13  GDAVKAGLTQFGYVVDWLKDGDAARAAVKSESFELIILDLGLP--KLSGLSFLQTIRHEG 70

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETG 129
           +  P+I ++   +++  +   DSG DD + KP    E+ ARV A+ RR +  +++  +  
Sbjct: 71  NTTPVIILTARETVEDRIKGLDSGADDYMTKPFDLNELSARVRALVRRSQGRADSVLQYR 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +        V   +  +PRRE  +L+ L+ N G+ +++ Q+  +IYG +DE V+ N 
Sbjct: 131 NVTLDPAAHSVYVDDVMINVPRREFALLQKLLENSGQVLSREQLMQSIYG-WDEDVDSNA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +E HI  LRKKL      + + + R +GY  + N
Sbjct: 190 LEVHIHNLRKKLNA----NFIRTIRGVGYMAEKN 219


>gi|107104462|ref|ZP_01368380.1| hypothetical protein PaerPA_01005539 [Pseudomonas aeruginosa PACS2]
          Length = 212

 Score =  228 bits (582), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 87/212 (41%), Gaps = 9/212 (4%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---H 70
                    G       + +    +    + D+  ++  L   G   +EL R ++     
Sbjct: 1   MIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLP--GTSGIELARRLKRDELT 58

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AET 128
             +P+I ++        +   + G DD + KP   RE++AR+ A+ RR    ++    E 
Sbjct: 59  VDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTGPGDSEAPIEV 118

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + +        + G+   +   E R+L++ M ++ +   + Q+   ++G  +  VEE 
Sbjct: 119 GGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVWGG-NVYVEER 177

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V+ HI +LRK L      + V + R  GY  
Sbjct: 178 TVDVHIRRLRKALGEVYE-NLVQTVRGTGYRF 208


>gi|152979029|ref|YP_001344658.1| two component transcriptional regulator [Actinobacillus
           succinogenes 130Z]
 gi|150840752|gb|ABR74723.1| two component transcriptional regulator, winged helix family
           [Actinobacillus succinogenes 130Z]
          Length = 226

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ +G        G S++ F   +       SA  D   ++  L       L+
Sbjct: 4   LLIEDDPLIGNGLNIGLTKSGFSVDWFTDGKTGLEAVKSAPYDAVVLDLTLP--KMDGLD 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLK 120
           + +  R     VP++ ++   +L   ++    G DD + KP    E++AR+ A+  RR  
Sbjct: 62  ILQQWRHDGFDVPVLILTARDTLDERVNGLQMGADDYLCKPFALAEVVARLQALIRRRYG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N   E   ++   +     ++ +   L  RE ++LE  M N+ + + +  I   +Y  
Sbjct: 122 QANPIIEHSLVKFDPNNHRVTLRDKEVALTTREYKLLELFMLNKERVLTRAFIEEKLYN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +DE +  N +E H+  LRKKL    G   + +   +GY++  N
Sbjct: 181 WDEDISSNALEVHMYNLRKKL----GKQFIRTVHGVGYALGKN 219


>gi|326939521|gb|AEA15417.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 232

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A R +     +I
Sbjct: 124 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 184 YESVWNERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|261419917|ref|YP_003253599.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319766731|ref|YP_004132232.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261376374|gb|ACX79117.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317111597|gb|ADU94089.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 226

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D        +G   ++  +  E  ++L+     D+  ++  +       
Sbjct: 4   LLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRH-HADLVLLDVMMPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R IR+ S VP++ ++        +     G DD V KP    E+LAR+ A+ RR  
Sbjct: 61  WETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRRTA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      +    +      + +   L  +E  IL  L+ +  +  ++ QI ++++G 
Sbjct: 121 GGRSAIRAARLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
           +    EE  V+SH+  +R+KLR       + + +   +GY  +
Sbjct: 180 YLADTEERTVDSHMKNIREKLRKAGFPADEYLQTVWGVGYKWE 222


>gi|68250311|ref|YP_249423.1| transcriptional regulatory protein [Haemophilus influenzae
           86-028NP]
 gi|68058510|gb|AAX88763.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           86-028NP]
          Length = 221

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L       L
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSASYDAVVLDLTLP--KLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           ++ +  R+ H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A+  RR 
Sbjct: 61  DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E   +++  + R   +  +   L  RE ++LE  M N+   ++++ I   +  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDCVLSRSSIEEKL-S 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 216


>gi|289550049|ref|YP_003470953.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus lugdunensis HKU09-01]
 gi|315659323|ref|ZP_07912187.1| hemin DNA-binding response regulator [Staphylococcus lugdunensis
           M23590]
 gi|289179581|gb|ADC86826.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus lugdunensis HKU09-01]
 gi|315495748|gb|EFU84079.1| hemin DNA-binding response regulator [Staphylococcus lugdunensis
           M23590]
          Length = 224

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 102/220 (46%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D   +   ++G     +        LQ   ++ V      ++  G    E
Sbjct: 5   LIVDDDQTILDYVASHLNNEGY--HTYTKPSGTAALQFLEQQTVDIAIVDIMMAGMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L + I+    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR ++ 
Sbjct: 63  LCQQIKLDFDLPVIMLTARDALTDKERAFLSGTDDYVTKPFEIKELIFRIKAVLRRYQIN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  + G + +  +  + +V  +   LP++E ++L  L ++  +   +  +   ++G F
Sbjct: 123 AEHIIQLGNLTLNDNYMEVQVDHKTMTLPKKEFQLLYMLTSHPKQVFLRDTLIEKVWG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  ++ HI +LR++L        + + R  GY ++
Sbjct: 182 DYEGDERTLDVHIKRLRQRLSKLAANVTITTVRGQGYKVE 221


>gi|257057097|ref|YP_003134929.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256586969|gb|ACU98102.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 221

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G ++      +       +   D+  ++  L   G    
Sbjct: 4   ILVAEDEPRIAAFVNKGLTANGFTVTVVEDGQAAYEYALTGSFDLMVLDIGLP--GMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA    +P+I ++   S+Q T+   + G DD + KP    E+LARV    R + 
Sbjct: 62  TVLRKLRAERCPIPVIILTARDSVQDTVAGLEGGADDYMPKPFRFEELLARVR--LRLVS 119

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +        G +++    R   V GE   L  RE  + E  + + G+ +++ Q+ S +
Sbjct: 120 DRSQEPTVLTYGGLQLDLRTRRAHVGGETVDLSAREFALAETFLRHPGQVLSREQLLSQV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D     NVV+ ++  LR+KL    G D + + R +GY ++
Sbjct: 180 WG-YDFDPGSNVVDVYVRYLRRKL----GADRITTVRGMGYRLE 218


>gi|209524683|ref|ZP_03273230.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209494827|gb|EDZ95135.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 227

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 102/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +G +++          L  +   D+  ++  L  +    L
Sbjct: 3   ILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQ--SGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+   +R   ++ P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  EICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + V++NR E G ++   + +          L  +E ++LEYLM + G+ +  T+I  
Sbjct: 121 ILDVAVTSNRLEFGDLQFDCETQLAYRGQRAIELSEKESQLLEYLMRHPGQLLTHTEIHQ 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D+    NV+ + I  LR+K+        V +    GY  
Sbjct: 181 HLWGETDKKPSSNVLAAQIRLLRRKIELPNEVPLVHTVYGKGYRF 225


>gi|119503167|ref|ZP_01625251.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
 gi|119460813|gb|EAW41904.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
          Length = 233

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D         G       +++         R D+  ++  L   G   +E
Sbjct: 7   LIVDDELPIRDMLRMALETAGYECLEAETIDAAYHQIVDDRPDIVLLDWMLP--GGSGIE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R I+       +P+I ++   +    +   D G DD + KP   RE+LAR+ A+ RR 
Sbjct: 65  LLRRIKRAEMTQDLPVIMLTAKAAEHNVIQGLDVGADDYITKPFALRELLARIKALLRRA 124

Query: 120 KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           K S++R       + +  D R   V  E   L   E  +L + M++  +   ++Q+   +
Sbjct: 125 KSSDDRNLLVVRDLTIDIDSRRAFVGEEALQLGPTEFNLLLFFMSHPERAYTRSQLLDRV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LR  L    G     + + R  GY  
Sbjct: 185 WGA-NIYVEERTVDVHIRRLRAALDAAEGDYSQLIQTVRGTGYRF 228


>gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 100/220 (45%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + +       ++G S+    S+   + L  +   +  A+   ++  G    
Sbjct: 3   ILVAEDEKRLLELLRNGLAEEGHSV--ITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R    QVP++ ++   +    +   D+G DD V KP    E+LAR+ A+ RR  
Sbjct: 61  EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++      + + S   +         L R E  +L+ LM N G+ V++  +   ++G
Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +D A+E N +++ I  LR+K+  +     + + R  GYS
Sbjct: 181 -YDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGYS 219


>gi|17549382|ref|NP_522722.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431635|emb|CAD18312.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 219

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +               E  +              ++  ++  L   G+  
Sbjct: 1   MILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLP--GKDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S +P++ ++        L   + G DD + KP   RE++AR+  I RR++
Sbjct: 59  LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRRVQ 118

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S  ++++  +++ +      ++G+   L   E R+L  L    G+ +++  +   IY  
Sbjct: 119 RSGAQSDS-LLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 177

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 178 H-RVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 218


>gi|257878630|ref|ZP_05658283.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257881295|ref|ZP_05660948.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257885571|ref|ZP_05665224.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257888114|ref|ZP_05667767.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257890512|ref|ZP_05670165.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257893088|ref|ZP_05672741.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257899254|ref|ZP_05678907.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260558210|ref|ZP_05830406.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261206900|ref|ZP_05921589.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289567406|ref|ZP_06447772.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|314940148|ref|ZP_07847328.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04]
 gi|314943020|ref|ZP_07849824.1| putative regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|314948138|ref|ZP_07851534.1| putative regulatory protein VanR [Enterococcus faecium TX0082]
 gi|314953448|ref|ZP_07856366.1| putative regulatory protein VanR [Enterococcus faecium TX0133A]
 gi|314993812|ref|ZP_07859149.1| putative regulatory protein VanR [Enterococcus faecium TX0133B]
 gi|314998162|ref|ZP_07863044.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|257812858|gb|EEV41616.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257816953|gb|EEV44281.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257821427|gb|EEV48557.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257824168|gb|EEV51100.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257826872|gb|EEV53498.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257829467|gb|EEV56074.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257837166|gb|EEV62240.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260075384|gb|EEW63690.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260078528|gb|EEW66230.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289160802|gb|EFD08736.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|313587874|gb|EFR66719.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|313591735|gb|EFR70580.1| putative regulatory protein VanR [Enterococcus faecium TX0133B]
 gi|313594551|gb|EFR73396.1| putative regulatory protein VanR [Enterococcus faecium TX0133A]
 gi|313598220|gb|EFR77065.1| putative regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|313640653|gb|EFS05233.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04]
 gi|313645392|gb|EFS09972.1| putative regulatory protein VanR [Enterococcus faecium TX0082]
          Length = 236

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++G   E   + + +E L       D+  +   ++      
Sbjct: 10  ILIADDDKEIVELLSIYVHNEGY--EAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR K
Sbjct: 68  MQVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 127

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       +  E   + +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 128 MQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEIF 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 188 ERVWKQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 234


>gi|241888630|ref|ZP_04775937.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
 gi|241864653|gb|EER69028.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
          Length = 223

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  S++  +  + EE L      D   I   ++       
Sbjct: 3   ILVVEDERDLNRIITKHLKRNNYSVD--SCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E  + +R   +  P+I ++   +L+  +   DSG DD + KP    E+ AR+  + RR  
Sbjct: 61  EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ N  +   I +    +     GE   L  +E  +LEYLM N+   +++ QI + ++ 
Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +D     N+V+  I  +RKKL N      + +KR LGY
Sbjct: 181 -YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGY 218


>gi|229191256|ref|ZP_04318244.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228592271|gb|EEK50102.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 228

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++    +++ +E L      +V  I   ++       
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNV--LEAIDGKEALSIFEEYEVHLIILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  TVCRRIRKKSNVPIIMLTARVDEHDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122

Query: 121 VSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + N        +  I V    R   + GE   L   E  I+ YLM N+G  +++ Q+ +
Sbjct: 123 SAANVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225


>gi|158338752|ref|YP_001519929.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308993|gb|ABW30610.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 243

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E        A  D+  ++  +        
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEAIDTFHHAIPDLVVLDVMMP--KLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 66  GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVSK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       +++ ++ R      E   L   E  +LE L++  G+  +++ I 
Sbjct: 126 NGNSGIPSSGVISVHTLKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSDIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGY 231


>gi|120556126|ref|YP_960477.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325975|gb|ABM20290.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 221

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + +       DDG +++   +L F E    +   D+  ++  L         
Sbjct: 4   LLVEDTAGLGEAVRDQIADDGHAVDWVQTLRFAEASIRTTAYDLILLDLMLPD--GHGFG 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R IRA     P+I ++    +   ++  ++G DD + KP    E+ ARVAA+ RR + 
Sbjct: 62  FLRTIRATGITTPVIILTARDQVSDRIEGLNAGADDYLVKPFDLSELSARVAAVARRYRG 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   + G + +          G    L  RE  + E  +   G  ++++Q+   +Y  
Sbjct: 122 NPSPIIQVGELMIDLGDHRISRNGLPVELTAREWALFEGFIQRPGMLLSRSQLEDRLY-A 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           F   +E N +E ++S+LRKKL    G D + + R +GY ++
Sbjct: 181 FGAEIESNTIEVYVSRLRKKL----GRDAIVTVRGMGYRLE 217


>gi|295836940|ref|ZP_06823873.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826289|gb|EFG64773.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 229

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + D+  ++  L   G   +E
Sbjct: 10  LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFHDTKPDLVLLDLMLP--GRDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R+IRA S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR  + 
Sbjct: 68  VCRLIRAESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  +   G + +   G   + + +   L   E  +L  L     +   +  +   ++G +
Sbjct: 128 APEQLTIGDLVIDVAGHSVKRESQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 225


>gi|218248934|ref|YP_002374305.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218169412|gb|ACK68149.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 224

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         +   +++     E    L  +   D+  ++  L       + 
Sbjct: 4   LLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLP--KLDGIS 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R     +P++ ++   + +  +   D G DD V KP    E+ AR+ A+ RR   
Sbjct: 62  LCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGNT 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S +       + +  +        +   L  +E  +LE  + N    ++++ I   ++  
Sbjct: 122 SLSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWSF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            D   EE  V+ HI +LRKKLRN     D +++   LGY +
Sbjct: 182 EDPPSEE-AVKVHIKELRKKLRNVGSLPDFIETVYGLGYRL 221


>gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
 gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
          Length = 234

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 19/232 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE----DVSAIEAFLIGKG 57
            ++++D  +++D  +      G  +   +    EE +Q   R     DV+ ++  +   G
Sbjct: 4   ILVVEDEDVIRDFEVINLKRAGYEV--VDVPTGEEAIQVFERNPTHFDVAVLDVMMP--G 59

Query: 58  EKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
               E+ R IR  +S + +I ++        ++    G DD V KP    E++ARV A++
Sbjct: 60  MDGFEVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDALH 119

Query: 117 RRLKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           RR+ V+  +A+        +GP  +    R     G V  L + E +ILEY   N    +
Sbjct: 120 RRVTVAAEKAQAPAPSELKSGPFVLNMKSRTVSKNGRVLELTQVEYQILEYFFNNPNTAL 179

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            +  I + ++G      +  +V+ +I +LR KL +     + + +    GY 
Sbjct: 180 GRQDILNKVWGEG-YFGDIKIVDVNIRRLRMKLEDAPSKPEFLLTVWGFGYK 230


>gi|313891367|ref|ZP_07824983.1| putative sensory transduction protein RegX3 [Dialister
           microaerophilus UPII 345-E]
 gi|313120142|gb|EFR43318.1| putative sensory transduction protein RegX3 [Dialister
           microaerophilus UPII 345-E]
          Length = 234

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 103/231 (44%), Gaps = 15/231 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +   ++D + +++  +         ++GF   E       +   D+  ++  L   GE  
Sbjct: 3   LIYCVEDDSGIRELVMYALKGQKFDVKGFAGAEKFYKELENKIPDLILLDIMLP--GEDG 60

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L + + +R    +S +P++ ++   S    +   DSG DD + KP    E+++RV ++ R
Sbjct: 61  LCVLKKLRNTNEYSTIPIVMMTAKTSEYDIVKGLDSGADDYITKPFGIMELISRVKSLLR 120

Query: 118 RLKVSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R     N         +     +          G+   L  +E ++L+YL+ N+G  +++
Sbjct: 121 RSNYGKNTSKEEPKILKYKNTIIDEAKHVVTENGKEVFLTLKEFKLLQYLVINKGIVLSR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +I   ++    E +E   V+ HI  LRKK+++      +++ R +GY ++
Sbjct: 181 DRIMEVVWDSPIE-IESRTVDMHIKSLRKKIKD--CDKYINTVRGIGYRLE 228


>gi|294634503|ref|ZP_06713038.1| QseB [Edwardsiella tarda ATCC 23685]
 gi|291092017|gb|EFE24578.1| QseB [Edwardsiella tarda ATCC 23685]
          Length = 220

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G     G +  + +   S      L  S +  +  ++  L    +   
Sbjct: 3   ILIVEDDTLIQQGLAQAMGRENYACDCAGSAAEANGLLQSGQYSLIILDLGLPDM-DGGS 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L +  R     P++ ++   ++   +   D+G DD + KP    E+LAR  A+ RR++ 
Sbjct: 62  ALRQWRRDGIATPVLILTARDTVGERVAGLDAGADDYLVKPFALAELLARTRALIRRMQG 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N  +   IR+           +   +  +E  IL  LM   G+ +++  +   +Y  
Sbjct: 122 LCDNILQVDNIRLDLSNHQVSCNNQALEVTPKEFTILARLMTRAGQTISREVLQQDLYSW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            DE +  N +E HI  LR+KL    G + + + R +GY ++
Sbjct: 182 QDE-LSSNSLEVHIHNLRRKL----GRERIKTLRGVGYRLE 217


>gi|229162433|ref|ZP_04290394.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228620912|gb|EEK77777.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 225

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFE 224


>gi|223369872|gb|ACM88804.1| two-component system response regulator [Arthrobacter sp. A3]
          Length = 258

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG              +  + + D+  ++  L   G   +
Sbjct: 39  ILVVDDDEALAEMIGIVLRNDGFGPVFCGDGAKAFEVSQANKPDLVLLDLMLP--GMDGI 96

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IRA S VP++ ++        +   +SG DD V KP    E++ARV A  R   V
Sbjct: 97  EICRLIRAESDVPIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARVRARLRPGDV 156

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G I +   G      GE   L   E  +L  L     +  ++  +   ++G 
Sbjct: 157 KPPETLVIGEITIDVAGHSIRRAGEKISLTPLEFDLLAALARKPWQVFSRELLLEQVWG- 215

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
           +  A +  +V +H+ +LR K+ R+    + V + R +GY 
Sbjct: 216 YRHAADTRLVNAHVQRLRSKIERDPEAPEVVLTVRGVGYK 255


>gi|310830024|ref|YP_003962381.1| two-component system protein response regulator [Eubacterium
           limosum KIST612]
 gi|308741758|gb|ADO39418.1| two-component system protein response regulator [Eubacterium
           limosum KIST612]
          Length = 239

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +          +G   ++   + +           DV  ++  L       
Sbjct: 9   ILLVDDEPDITSLVETALRKEGFRCVDMAFTGKEALAACKENAPDVVILDIMLPD--MDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S  P++ +S        +    SG DD + KP   +E++ RV A  RRL+
Sbjct: 67  IEVCRAIREFSYCPVLFLSARNDDVDKILGLSSGGDDYITKPFSPKELVFRVKAQLRRLE 126

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +  R   G + +  DG      G    L  RE  IL YL  N GK ++K ++
Sbjct: 127 YNKTAEAAAGRRIRVGGLEIDVDGSRVYQDGRELGLTAREFGILLYLAENAGKIISKDRL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +  ++G    AV +N +  HI  LR+K+         + + + LGY +
Sbjct: 187 YEQVWGEL-SAVCDNTIMVHIRHLREKIEKDPSRPALILTVKGLGYRM 233


>gi|229080343|ref|ZP_04212868.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228703012|gb|EEL55473.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 228

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++    +++ +E L      +V  I   ++       
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNV--LEAMDGKEALSIFEEHEVHLIILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  TVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I V    R   + GE   L   E  I+ YLM N+G  +++ Q+ +
Sbjct: 123 SAVNVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225


>gi|217970353|ref|YP_002355587.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507680|gb|ACK54691.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 219

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 100/219 (45%), Gaps = 9/219 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +G       +  +++     +    L +   ED +     L       L
Sbjct: 3   ILLVEDDAALGEGIRVALKPEAYTVDWVQ--DGASALHALTHEDFALAVLDLGLPRMDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + +RA +  VP++ ++   +    +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  QVLQRLRAAANPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVDELKARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G + +    +    +G+   L R+E  +L  L+   G+ + + ++  A+YG
Sbjct: 121 NRAQPVLHHGEVVLDPVNQQVSYRGQPVVLQRKEFLLLHELLTQPGRVLTRDRLQQALYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             +EA E N +E HI  LR+KL      + + + R +GY
Sbjct: 181 WGEEA-ESNTLEVHIHHLRRKL----FPELIRTVRGVGY 214


>gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 226

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 101/220 (45%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++           +++   + +    L+    +    I   L+   +    
Sbjct: 4   LIVDDEPELREQIALSLRQQQYTVD--TAGDGALALEKVFADPFDLIVLDLMLPEKDGFT 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA   + P++ ++    + + +   D G DD ++KP    E+LAR+ A+ RR   
Sbjct: 62  VLRELRAEGVKTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRSHE 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G IR+ ++ R   +  +   L  +E  +LE+L  NR + +++  +   ++G 
Sbjct: 122 QISPVLTIGNIRLDTNTRIVTLDNQPVSLTPKEFSLLEFLFYNRNRAISRFTMAEHVWGD 181

Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            FD     N ++ HI  +RKKL ++ G   + + R +GY 
Sbjct: 182 AFDPFTMSNNIDVHIKNVRKKLNDQGGR-IIVTVRGVGYM 220


>gi|299538439|ref|ZP_07051722.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298726026|gb|EFI66618.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 239

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 90/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +        +          ++ D   ++  L       +E
Sbjct: 9   LIVEDENDIANIIRDYLSVNQFDSHIVRTGHEAIHYLQESKPDFIILDLSLPDC--DGIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R IR +S V ++ +S   S    +     G DD + KP    E++AR+ A  RR    
Sbjct: 67  ICRKIRENSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRRQDRW 126

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++  +      + +           +  PL  +E  +L +L  NR +  +K Q+
Sbjct: 127 LQHSGGQMGVDVIHIDNMVINKQEYIFLRDSKPIPLSAKEFELLFFLAKNRNQVFSKGQL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             A++G ++   +EN +  +I +LR+K+  +      + +   +GY  
Sbjct: 187 LDAVWG-YETYGDENTITVYIRRLREKIEVSPSHPVYLQTVWGVGYKF 233


>gi|21325738|dbj|BAC00359.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
          Length = 252

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 28  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPE--LDGLE 85

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 86  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 145

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 146 TTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLITE 205

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 206 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 249


>gi|75759276|ref|ZP_00739375.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903343|ref|ZP_04067474.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228910680|ref|ZP_04074491.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|74493225|gb|EAO56342.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228848948|gb|EEM93791.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228856304|gb|EEN00833.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 242

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 98/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +    + + EE L+   + DV  I   ++      +
Sbjct: 15  ILIVDDEKEIRKLITIYLKNEGYEV--LQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 73  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N  E G ++V    R   +  E   L  RE  +LE L+ N+G  +   QI+
Sbjct: 133 MSGTSVQDENEIEIGDMKVNIVTRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIY 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 193 ERVW-KEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 241


>gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 101/224 (45%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   D       + G  +E   +    + L      D+  ++  L   G    
Sbjct: 3   ILVVEDEAKTADYLKRGLEESGYRVEVARNGVDGKHLIEEETFDLVILDVMLP--GLDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L +++R  S   P++ ++   +++  +   + G DD + KP  + E+LARV  + RR  
Sbjct: 61  QLVQVVRQRSAHTPVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLLRRGP 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +    R    QGE   L  +E  +L  L++ +G+ +++ QI S ++ 
Sbjct: 121 PREVEHFHVADLELDLLRRRVTRQGERINLTNKEFALLHLLLSRQGEVLSRAQIASQVWQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + +   + NVV+  I +LR K+ +      + + R +GY +D +
Sbjct: 181 M-NFDSDTNVVDVAIRRLRAKVDDPYPLKLIHTVRGMGYVLDVS 223


>gi|254415706|ref|ZP_05029464.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177412|gb|EDX72418.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 236

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            ++++D A +          +G +   ++  +    +Q+  S + DV  ++  L   G  
Sbjct: 3   ILIVEDEAEIAKLIQLTLEREGFTC--YSCRDGLAAIQAFQSQQPDVIILDLMLP--GLD 58

Query: 60  VLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            LE+   IR         ++ ++        +    +G DD + KP    E++ARV A+ 
Sbjct: 59  GLEVCARIRQKPGPKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPTELVARVRALL 118

Query: 117 RRLKVSNNRA---ETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRV 168
           RR    + ++    T    V  D      Q      E   L   E  +L    +  G+  
Sbjct: 119 RRSLRHSGQSLVYRTQHFTVDVDQHTASRQLESGESEPLDLTTLEFNLLATFTSQPGRVW 178

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            +TQ+   ++G  D   +E VV++H+++LRKK+  +      + +   +GY  + N
Sbjct: 179 NRTQLIDKLWGN-DFFGDERVVDTHVARLRKKIEPDPSNPTFIKTVIGVGYKFEDN 233


>gi|238793011|ref|ZP_04636640.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia
           ATCC 29909]
 gi|238727611|gb|EEQ19136.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia
           ATCC 29909]
          Length = 220

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G      + G + +   +      L  +++  +  ++  L  +   VL
Sbjct: 3   LLIVEDDELLQRGIAMALTNQGYACDCAGTAAEAHSLLHTSQYSMVILDLGLPDQDGAVL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR + 
Sbjct: 63  -LRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  +   + +    +   +Q +   +  +E  IL  L+   G+ V +  +   +Y  
Sbjct: 122 QSDNLVQQDDLSLNLSTQQVCLQDQPLEVTPKEFAILSRLIMRAGQTVNRELLQQDLYTW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 182 NDDLG-SNTLEVHIHNLRRKL----GKDRIRTVRGIGYRLE 217


>gi|300718589|ref|YP_003743392.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299064425|emb|CAX61545.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 220

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL+  G +     +G +++   +      L  S +  +  ++  L  +     
Sbjct: 3   LLVVEDDALLLGGLVQALTTEGYAVDAAKNGAEACALLQSGQYSLIVLDLGLPDR--DGR 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  R  +  +P++ ++   +L+  +D  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  QLLRQWRKETIDLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELKARVRALIRRYQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  + G + +    +   +  +   L  +E  +L  L+    + V +  +   +Y 
Sbjct: 121 GRSDNLLQQGDLSLNLSSQQVYIDNQPVELTPKEFALLTRLLMRISQTVHRETLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+    N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 181 WQDDTG-SNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLE 217


>gi|199597921|ref|ZP_03211346.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258507247|ref|YP_003169998.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258538434|ref|YP_003172933.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591178|gb|EDY99259.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257147174|emb|CAR86147.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150110|emb|CAR89082.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259648613|dbj|BAI40775.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 228

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   ++ ++  E    L +    D++ +   ++      
Sbjct: 3   ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVT--NPDIALMILDIMMPNMSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  MDVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 120

Query: 121 -----VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 NEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|158336368|ref|YP_001517542.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306609|gb|ABW28226.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 237

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 103/228 (45%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +    + + EE LQ    ++   I   ++       
Sbjct: 8   ILVADDEASIRRILETRLSMMGFVV--ITAADGEEALQVFQHQEPDLIILDVMMPKLNGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S VP+I ++    +   +   + G DD + KP   +E+ +R+  I RR+  
Sbjct: 66  QVCQSLRQESDVPIIMLTALSDVADRITGLEMGADDYMVKPFSPKELESRIRCILRRITK 125

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S++         + G + + ++ R      E   L   E  +LE L++  G+ +++ +  
Sbjct: 126 SHSSHHKSAGVIQVGHLEIDTNKRQVYKDKERIQLTHLEFNLLELLVSRPGEPISRVEFL 185

Query: 175 SAIYGLF-DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             ++G   D  ++  VV+ H+S+LR KL  +    D + S R +GY+I
Sbjct: 186 QKVWGYSPDGKIDTRVVDVHMSRLRNKLKEDTEEPDLILSVRGVGYAI 233


>gi|116054192|ref|YP_788636.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115589413|gb|ABJ15428.1| two-component response regulator CreB [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 229

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D  +     +G +            LQ     D+  ++  L        
Sbjct: 4   ILIVEDEAAIADTLLYALQAEGFATTWVTLAGEALVLQERQPADLLILDVGLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R  S+VP+I ++   +    +   + G DD V KP   RE+ ARV AI +R+  
Sbjct: 62  EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                E    +GP +V  +      +     L R E R+L+ L+    +  ++ Q+  A+
Sbjct: 122 RPAALEEAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            G+  EA  E  ++SHI  LR KLR      + + + R LGYS
Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNERGEAIQTHRGLGYS 223


>gi|312127464|ref|YP_003992338.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777483|gb|ADQ06969.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 232

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +   F +    + L+      V  +   ++   +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYN--TFEADSGLQALEILKHNKVDLVILDIMMSDKDGY 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR       +P+I +S        +   + G DD + KP   +E++ RV A+ RR
Sbjct: 62  EVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 119 LKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++      E     G + V    R  +   +   L  +E  +L+ L+ N+G+ + +  I 
Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  +
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFN 228


>gi|218670388|ref|ZP_03520059.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli GR56]
          Length = 231

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G++                   D+  ++  +       L
Sbjct: 5   ILVVDDEPHIRDVICFALERGGLTSTAVRGGTEAMAAFRRGNIDLIILDIGMPD--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  S +P++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 63  EVCRQIRQTSALPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKRSGN 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G I +   GR          +   E  ILE L++  G   ++ Q+  
Sbjct: 123 GAAPDRRHAALVAGEIILDRHGRTVMFGDSALAMTGLEFAILEALLSRPGMVFSREQLME 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A YG     V +  ++SHI  +R K     G   + +   +G+ +
Sbjct: 183 AAYGAGTY-VADRTIDSHIRNIRAKFTAVGGSGIIATVHGIGFKL 226


>gi|220908331|ref|YP_002483642.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
 gi|219864942|gb|ACL45281.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 652

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ D  ++        ++                 D+  ++  L  +    +
Sbjct: 3   ILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQ--DGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R +RA  SQVP++ I+   +    +   D+G DD + KP+   E+ ARV A+ RR  
Sbjct: 61  TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      + G +++               L  +E  +LE  + + G+  ++ Q+   ++ 
Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD+   E  V++H+  LR+KL+     D +++   +GY ++
Sbjct: 180 TFDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRLN 221



 Score = 89.2 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 5/157 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD  +  +  + L    G+ L G N+      +  S R D+  ++  +       +E
Sbjct: 383 LLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQT--SGIE 440

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + +R       +P+I ++ +   +T    F  G DD V KP+   E+L R+     R 
Sbjct: 441 LCQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINRLERT 500

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
           ++  + A   P+    +        E    P R   +
Sbjct: 501 RLIQSLASKDPLTGLFNQLQSSRLLEEQLQPDRVFSL 537


>gi|146306206|ref|YP_001186671.1| two component heavy metal response transcriptional regulator
           [Pseudomonas mendocina ymp]
 gi|145574407|gb|ABP83939.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas mendocina ymp]
          Length = 224

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +      + + A  ++  ++  L        
Sbjct: 3   ILIVEDELKTAEYLHQGLTESGYVVDIATNGVDGLHMAAQASYELIILDVDLPE--IDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR +S+ P++ ++    L   L  FDSG DD + KP    E+LARV ++ RR + 
Sbjct: 61  GVLASIRRNSRTPVMMLTARGRLADKLKGFDSGADDYLVKPFEFPELLARVRSLLRRGEQ 120

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +  +   + +          G+   L  +E  +L  LM   G+ +++TQI S ++ 
Sbjct: 121 VSAPDVLKVDDLELDPARHRAYRNGQRIDLTTKEFALLHLLMRRSGEVLSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFENKLIHTLRGVGYVLE 221


>gi|88703476|ref|ZP_01101192.1| Phosphate regulon transcriptional regulatory protein phoB
           [Congregibacter litoralis KT71]
 gi|88702190|gb|EAQ99293.1| Phosphate regulon transcriptional regulatory protein phoB
           [Congregibacter litoralis KT71]
          Length = 236

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D                ++++    +    R D+  ++  L   G   +E
Sbjct: 7   LVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQRPDIVLLDWMLP--GGSGIE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++      ++P+I ++   +    +   + G DD + KP   RE++AR+ A+ RR 
Sbjct: 65  LLRRLKRDDTTQEIPVIMLTAKTAEDNVIQGLEVGADDYITKPFAPRELIARIKALLRRS 124

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            V  S +R +   + +    R   +  E   +   E  +L++ M++  +  ++ Q+   +
Sbjct: 125 GVGESADRMQVSELVLDGKSRRVYLADEPLDMGPTEFNLLQFFMSHPERAYSRNQMLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L    K     + + R  GY  
Sbjct: 185 WGA-NVYVEERTVDVHIRRLRKALQVEGKDYSGLIQTVRGTGYRF 228


>gi|30263549|ref|NP_845926.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42782670|ref|NP_979917.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47528946|ref|YP_020295.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47567882|ref|ZP_00238589.1| two-component response regulator [Bacillus cereus G9241]
 gi|49186400|ref|YP_029652.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49477754|ref|YP_037680.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141934|ref|YP_084893.1| transcriptional regulatory protein [Bacillus cereus E33L]
 gi|118478844|ref|YP_895995.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|165870959|ref|ZP_02215610.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167636464|ref|ZP_02394762.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640572|ref|ZP_02398834.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688455|ref|ZP_02879663.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708146|ref|ZP_02898593.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652476|ref|ZP_02934943.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564567|ref|ZP_03017488.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196034040|ref|ZP_03101450.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196038467|ref|ZP_03105776.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044699|ref|ZP_03111934.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206975347|ref|ZP_03236260.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217961002|ref|YP_002339570.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218904728|ref|YP_002452562.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222097054|ref|YP_002531111.1| transcriptional regulatory protein [Bacillus cereus Q1]
 gi|225865582|ref|YP_002750960.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227813568|ref|YP_002813577.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228916230|ref|ZP_04079800.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928652|ref|ZP_04091688.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228934872|ref|ZP_04097703.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947215|ref|ZP_04109509.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228986689|ref|ZP_04146819.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229123117|ref|ZP_04252324.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229140213|ref|ZP_04268771.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|229157173|ref|ZP_04285253.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|229185835|ref|ZP_04313008.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229197708|ref|ZP_04324428.1| Two-component response regulator [Bacillus cereus m1293]
 gi|229604587|ref|YP_002867793.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686167|ref|ZP_05150026.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254726066|ref|ZP_05187848.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738640|ref|ZP_05196343.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744802|ref|ZP_05202480.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254752958|ref|ZP_05204994.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759230|ref|ZP_05211256.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301055087|ref|YP_003793298.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30258184|gb|AAP27412.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42738596|gb|AAS42525.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47504094|gb|AAT32770.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47555360|gb|EAL13704.1| two-component response regulator [Bacillus cereus G9241]
 gi|49180327|gb|AAT55703.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49329310|gb|AAT59956.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975403|gb|AAU16953.1| transcriptional regulatory protein [Bacillus cereus E33L]
 gi|118418069|gb|ABK86488.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713170|gb|EDR18696.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511440|gb|EDR86824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528123|gb|EDR90915.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126954|gb|EDS95834.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667625|gb|EDT18380.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082150|gb|EDT67217.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190563884|gb|EDV17848.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195993114|gb|EDX57072.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196024734|gb|EDX63406.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196030875|gb|EDX69473.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206746249|gb|EDZ57643.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065228|gb|ACJ79478.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218538759|gb|ACK91157.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221241112|gb|ACM13822.1| transcriptional regulatory protein [Bacillus cereus Q1]
 gi|225789063|gb|ACO29280.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007659|gb|ACP17402.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228585785|gb|EEK43883.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228597547|gb|EEK55194.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228626237|gb|EEK82984.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228643299|gb|EEK99572.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228660411|gb|EEL16044.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228773020|gb|EEM21456.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812462|gb|EEM58789.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824772|gb|EEM70573.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830971|gb|EEM76572.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843428|gb|EEM88506.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268995|gb|ACQ50632.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300377256|gb|ADK06160.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 225

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFE 224


>gi|330465920|ref|YP_004403663.1| response regulator receiver [Verrucosispora maris AB-18-032]
 gi|328808891|gb|AEB43063.1| response regulator receiver [Verrucosispora maris AB-18-032]
          Length = 229

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         E         R D+  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLGIVLRSEGFMPSFVADGERALAAFRDNRPDIVLLDLMLP--GMSGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR + +
Sbjct: 64  VARAIRAESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDA 123

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                T       I +          GE   L   E  +L  L     +   +  +   +
Sbjct: 124 APELLTIGPPGNQIAIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +  A +  +V  H+ +LR K+       + + + R +GY 
Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|323183609|gb|EFZ69006.1| transcriptional regulatory protein qseB [Escherichia coli 1357]
          Length = 219

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + G+   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|304398000|ref|ZP_07379875.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304354286|gb|EFM18658.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 223

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G S++ F S E       +A  D   ++  L  +    L
Sbjct: 3   ILLIEDDRLIGDGIKAGLSKLGFSVDWFMSGESGFNALEAAPWDAVILDLSLPER--DGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R   + VP++ ++   +L   +     G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWRQQGNDVPVLILTARDALDQRVKGLQLGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +         +GE   L  RE  +LE  M N  + + ++Q+   +Y 
Sbjct: 121 GQLQPELRHGNVVLIPGSHSVMREGETIALKSRELALLELFMRNPSRVLTRSQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  V  N VE HI  LRKKL    G   + +   +GY++
Sbjct: 180 SWDADVSSNAVEVHIHHLRKKL----GSTFIRTLHGVGYTL 216


>gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 226

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 99/227 (43%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G  ++  ++      L      D+  ++  L  +    L
Sbjct: 3   ILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNYDLLILDWMLPQQ--SGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + +R      P++ ++   ++   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  QICQYLRNQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSP 120

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++++ ++  + + S+ +     G    L  +E ++L   M + G+ +   QI+  
Sbjct: 121 NFEASNSSKLKSADLELDSENQVAYRHGRTISLSAKEVQLLTLFMTHPGQLLTHEQIYQH 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++    E    NVV + +  LR+K+        +++    GY    N
Sbjct: 181 LWSEG-EQPNSNVVPALMRLLRRKIEAAGETPLINTVYGKGYRFGEN 226


>gi|161508040|ref|YP_001578007.1| two-component response regulator [Lactobacillus helveticus DPC
           4571]
 gi|160349029|gb|ABX27703.1| Two-component response regulator [Lactobacillus helveticus DPC
           4571]
 gi|323467275|gb|ADX70962.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Lactobacillus
           helveticus H10]
 gi|323467318|gb|ADX71005.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Lactobacillus
           helveticus H10]
          Length = 228

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  ++  E    L ++   D++ +   ++      
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTT--PDIALMILDIMMPNMSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR +
Sbjct: 61  IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 KQVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  +    V  H+S LR K++    G D + +   +GY ++
Sbjct: 181 ERVWQQ-ESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|160880215|ref|YP_001559183.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428881|gb|ABX42444.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 223

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 97/220 (44%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +   N  +    L      D+  ++  L        
Sbjct: 4   ILLVEDDPFIVNNLTEFLQSEGYIVSAVNGQKDALMLLKQEVYDIILLDISLKD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + I++    P+I ++      + +   D G DD ++KP   RE+L+R+ ++ RR   
Sbjct: 62  AVCKAIKSMGDTPVIFVTASGDEFSVVAGLDMGADDYISKPFRPRELLSRIKSVLRRCGK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  E   I+V ++      QG    L   E R+L   ++NRG  +++ ++   I+ + 
Sbjct: 122 VQSVIEIEGIQVDTEKGLVLKQGNEIFLSALEYRLLLVFLSNRGTVISRNKLLEEIWDIA 181

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            + V +N +  ++ +LR+K+ +       + + R LGY +
Sbjct: 182 GDFVNDNTLTVYVKRLREKIEDNPQEPTIIKTVRGLGYKV 221


>gi|322831802|ref|YP_004211829.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321167003|gb|ADW72702.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 239

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G + +          L  +    +  ++  L   G   L
Sbjct: 14  ILIVEDEPKLAQLLIDYLEAAGYATQWLPDGHDVITLVKNQPPALILLDLMLP--GSSGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR ++
Sbjct: 72  SICRDIRQFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKVILRRCVR 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              + A+   + +         QG    L   E R+L+ L    G    +  + + +Y  
Sbjct: 132 PGEHVAKETGLHIDEARFQATFQGHELELTPAEFRLLKTLSVKPGYVFTREVLLNNLYDD 191

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +   V +  ++SHI  LR+KL +  G    + +   +GY  +
Sbjct: 192 Y-RVVTDRTIDSHIKNLRRKLESLDGEKAFIRAVYGVGYRWE 232


>gi|228921864|ref|ZP_04085177.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837789|gb|EEM83117.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 236

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 100/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L 
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLH 73

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +R  +   P++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 74  VLQRLRGDNNETPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVTTLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVRGTGYVL 232


>gi|255305348|ref|ZP_05349520.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 233

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    R  +S +   ++       +
Sbjct: 5   LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I ++        +     G DD + KP    E++ARV ++ RR  + 
Sbjct: 65  VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 124

Query: 123 NNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N              + +    R   V         +E  +L +L +N+G+   K QI++
Sbjct: 125 NPAFITDTDCIIINGMIIDKTNRIVSVNNIPVQFTSKEFDLLAFLASNKGRVFTKKQIYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   + A +++ + S ISKLRKK+  +      + + R +GY  +
Sbjct: 185 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFN 230


>gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 232

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + D            +E   + E           D+  ++  L       L
Sbjct: 8   ILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPL--MDGL 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++    ++  +   D G DD + KP    E++AR+ A+ RR  
Sbjct: 66  SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDG 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179
             +     GP+ + +  R   +      L  +E  ILE+L+ NRG  V++  +   ++G 
Sbjct: 126 KRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWGN 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
            FD     N V+ HI  LRKK+       P  + + R +G+ ID
Sbjct: 186 EFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIID 229


>gi|301056320|ref|YP_003794531.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378489|gb|ADK07393.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 229

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL Y M N G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNPGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|297565541|ref|YP_003684513.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849990|gb|ADH63005.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 224

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +        GD G  ++              A  D+  ++  L        
Sbjct: 4   ILLIEDDPEIAHLLQLELGDAGFEVDWAPGGMSGLVRLREAPPDLVILDLGLPD--LDGG 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  ++VP+I ++   S++  +     G DD + KP H  E+LAR+     R + 
Sbjct: 62  EVARRIRVGAEVPIIVLTAADSVERKVTLLSGGADDYIVKPFHPAELLARIQVQL-RHRE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +   G + V    R     G+   L  +E  +L  L    GK  ++T+I   ++G  
Sbjct: 121 GGEQVTIGELEVHLSKRQVFYDGQEVRLSPKEFELLSLLCTRPGKVFSRTEIEEHLWGRS 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E  + NVV+ H++ LR KLR    +  + + R +GY++
Sbjct: 181 LE-RDSNVVDVHVANLRSKLRESGAYGYLRTVRGVGYAL 218


>gi|218441529|ref|YP_002379858.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174257|gb|ACK72990.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   +         D    ++  F+  +  +++QS +  D+  ++  L       
Sbjct: 3   ILLVEDDERIAKALGETLKDRQYVVDLAFDGEQGWDFIQSFS-YDLIILDVMLP--KLNG 59

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++L + +R+  Q  P++ ++   +    +   D+G DD V KP    E+ AR+ A+ RR 
Sbjct: 60  VDLCQRLRSAGQMTPVLMLTARDTSSDKVKGLDAGADDYVVKPFDLPELTARIRALLRRG 119

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +     E   +R+  + ++    G+   L  +E  +LE  + N    + + QI   ++
Sbjct: 120 NTALPPVLEWENLRLDPNTKEVTYAGKPLHLTPKEYGLLELFLRNSHMVLNRGQILEHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              D   EE  V+ HI +LRKKLR+     D +++   LGY +
Sbjct: 180 SFEDPPSEE-AVKVHIKELRKKLRSVGASPDSIETVYGLGYRL 221


>gi|184155774|ref|YP_001844114.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|227515634|ref|ZP_03945683.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|260663510|ref|ZP_05864400.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183227118|dbj|BAG27634.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|227086064|gb|EEI21376.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|260552051|gb|EEX25104.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 228

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          DG   +    L+  + L ++  +D   I   L+      L
Sbjct: 4   ILIIEDEENLARFVELELKHDGYETDV--ELDGRQGLDAALNQDFDVILLDLMLPELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR+  
Sbjct: 62  EVARRVREVKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V         + +  + R      EV  L +RE  +L  LM N    +++ ++ 
Sbjct: 122 EGDANSVHQTTVTYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|237794328|ref|YP_002861880.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229261381|gb|ACQ52414.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 228

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +  + + +  E ++     D+  I   L+       
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKV--YCTTKGLEGIEIFKSIDIKLIILDLMLPDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL  
Sbjct: 62  EVCRIIRQSSDVHIFMLTAKGTLNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N+ +    + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I
Sbjct: 122 YNSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|148657836|ref|YP_001278041.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148569946|gb|ABQ92091.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 231

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A     G              L  + R D+  ++  L        
Sbjct: 5   ILVVDDDRQIVRLVSAYLEHAGFQTLTAYDGAAALRLARTERPDLMVLDLMLPDV--DGA 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R IRA      +P+I ++        +   + G DD + KP + RE++ARV A+ RR
Sbjct: 63  DLTRTIRADPHLASMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLRR 122

Query: 119 LKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +       E G +R+  D  +  V      L   E  +L  L+++ G    + ++ 
Sbjct: 123 TGGGSPVPPVILEAGRLRLDLDRHEARVADRTINLTPTEFELLRILLSHPGHAFTRRELI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               G +D    E  ++SHI  LR+KL        +++   +GY +
Sbjct: 183 EQGPG-YDYEGMERTIDSHIKNLRRKLDAAGAGVRIETVYGVGYRL 227


>gi|313837585|gb|EFS75299.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314927535|gb|EFS91366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314972523|gb|EFT16620.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328907809|gb|EGG27572.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 237

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S            +    R  +  ++  L   G   +
Sbjct: 11  ILVVDDDAALAEMLQLVLVKEGFSTVWVGHGRDVMDVFRERRPALVLLDLMLP--GRDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
           ++ + IR  S VP+I ++        +    +G DD V KP    E++AR+ A  R    
Sbjct: 69  QICQDIRRESGVPIIMLTARSDTPDVVRGLGAGADDYVCKPFRSAELVARLRARLRTPAA 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  L  +  +  ++  +   ++
Sbjct: 129 QREEAGVITVGDLTIDPAAHVVQLGGEEISLTPLEYSLLLTLAQHPNQVFSRETLLREVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G  + A +  +V  H+ +LR K+ RN      + + R +GY I
Sbjct: 189 GYTNSA-DTRLVNVHVQRLRSKVERNADHPQMIITVRGIGYRI 230


>gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 231

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A + +       + G  +   ++      L  S   D++  +  +        
Sbjct: 5   ILVAEDDADICEVLRLYLENAGFDVISADNGIRAYDLLKSESPDLAIFDIMMPE--MNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL + +R  S +P+I +S   +    +   D G DD + KP +  E++ARV +  RR   
Sbjct: 63  ELTKRVRITSSIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNLRRKYK 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S      G + + +     +  GE   L   E +IL  LM   G+   K QI+
Sbjct: 123 LDSTAHQSGELLTVGELTLDTKKFTLQKNGEDIQLTPTEFKILSTLMEKPGRVFTKAQIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I G +    ++N +  HISKLR+KL +       + + R LGY I+
Sbjct: 183 ERINGEY-FENDDNTMMVHISKLREKLGDDSKRPKYLKTVRGLGYKIE 229


>gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 221

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 8/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++         +G  ++   +             DV  ++  L         
Sbjct: 6   LLVEDDPHIRKFIQLELEHEGYEVKTAVTGPQALDELEKELPDVVLLDVMLPE--MNGFT 63

Query: 63  LPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   IR    +++P+I ++    L+  +    SG DD + KP H  E+LAR+ A+ RR K
Sbjct: 64  VLERIREDFSTELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVLRR-K 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + +   G I +    R+ +V GE   L R E  +L+ L+ N G  ++K ++   ++G 
Sbjct: 123 GYSEKILYGNIEMNLSSREVKVNGEPVELSRTEFDLLKVLLTNAGIVMSKDRLLELVWGT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +E    NVVE +I+ LRKKL +      + + R +GY 
Sbjct: 183 -EEWGNPNVVEVYINYLRKKLGSAG--KIIKTVRGVGYV 218


>gi|153855865|ref|ZP_01996840.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814]
 gi|149751833|gb|EDM61764.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814]
          Length = 239

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 94/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +  F + +  E L+   +ED+      ++      + 
Sbjct: 11  LVVEDDKEIREGVEIYLKSQGYEV--FQAADGVEGLEVIEKEDIHLAIVDIMMPRMDGIS 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR +  
Sbjct: 69  MVVKLREKYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRRF 128

Query: 123 NNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             R             G + +  D  +  V GE   +   E +IL  LM N G+  +  +
Sbjct: 129 MERLGDKEENSRIHTIGGLEINEDNVEVTVDGEPVKMTPIEYKILLLLMKNPGRVFSAEE 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   + A+  + +  H+  +R+K+  N      +     +GY I+
Sbjct: 189 IYERVWN--ERAINTDTIMVHVRNIREKIEVNPREPKYLKVVWGVGYKIE 236


>gi|146313251|ref|YP_001178325.1| DNA-binding transcriptional regulator BasR [Enterobacter sp. 638]
 gi|145320127|gb|ABP62274.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 220

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      ++G +L+   +    + L  S    +  ++  L  K    L
Sbjct: 3   LLIVEDDLLLQEGLALGLANEGYALDCAATAAEADSLIQSGEYSLVILDLGLPDKDGATL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R     P++ ++   +++  +   DSG DD + KP    E+ AR  A+ RR + 
Sbjct: 63  -LSQWRRRGVDNPVLILTARDAIEDRIHGLDSGADDYLVKPFALAELQARARALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N+   G + +    +          +  +E  +L  L+   G+ V +  +   IY  
Sbjct: 122 HSDNQVVDGDLTLNLQTQQVLCDSHPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYSW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 182 QDDPG-SNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLE 217


>gi|191637032|ref|YP_001986198.1| Response regulator [Lactobacillus casei BL23]
 gi|301065366|ref|YP_003787389.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|190711334|emb|CAQ65340.1| Response regulator [Lactobacillus casei BL23]
 gi|300437773|gb|ADK17539.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381059|gb|AEA52535.1| Two-component response regulator [Lactobacillus casei LC2W]
 gi|327384234|gb|AEA55708.1| Two-component response regulator [Lactobacillus casei BD-II]
          Length = 228

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   ++ ++  E    L +    D++ +   ++      
Sbjct: 3   ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVT--NPDIALMILDIMMPNMSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  MDVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 120

Query: 121 -----VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 NEVTNTEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|318040600|ref|ZP_07972556.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 253

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + +E L++  R D   +   ++       
Sbjct: 16  ILVVDDEASIRRILETRLSMIGYQV--VTACDGQEALEAFRRTDPDLVVLDVMMPKLDGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 74  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 133

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   + G +R+ ++ R      E   L   E  +LE L+   G+  ++ +I 
Sbjct: 134 DSVAGIPNSGVIQVGDLRIDTNKRQVYRGEERIRLTGMEFSLLELLVGRSGEPFSRGEIL 193

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 194 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 239


>gi|229031256|ref|ZP_04187262.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228730014|gb|EEL80988.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 225

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL  K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGEK--AKHIGTVIRVGYKFE 224


>gi|114326810|ref|YP_743967.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114314984|gb|ABI61044.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
          Length = 226

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V    +    + G ++E  ++     ++ +S   D   ++  L G G   L
Sbjct: 3   ILLVEDDKDVAGFIVKGLREAGHTVEHRDNGRDGLFMAASENFDAIVLDRMLPG-GIDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R+     P++ +S    +   +    +G DD ++KP    E+LARV A+ RR K
Sbjct: 62  RLLETLRSQDVNTPVLFLSALSGVDERVKGLKAGGDDYLSKPFAFSELLARVEALTRRGK 121

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     + +    R  +  G+   L  RE R+LE+LM +  + V +T +   ++
Sbjct: 122 TDAPTTKLVVADLEMDLLSRGVKRGGQKIDLQPREFRLLEFLMRHADQVVTRTMLLEGVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR+K+        + + R  GY +
Sbjct: 182 D-YHFDPQTNVIDVHVSRLRQKVDKPFTVSLIHTVRNAGYML 222


>gi|110644669|ref|YP_672399.1| DNA-binding response regulator [Escherichia coli 536]
 gi|23954247|emb|CAD42044.1| hypothetical protein [Escherichia coli]
 gi|110346261|gb|ABG72498.1| DNA-binding response regulator [Escherichia coli 536]
          Length = 239

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNV--NGL 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR   S +P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 65  EICRYIRQMTSYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 124

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++       + +    R+  +  +   L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNILLASGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|56479001|ref|YP_160590.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1]
 gi|56315044|emb|CAI09689.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1]
          Length = 219

 Score =  227 bits (581), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + +G +     +G +++            +     ++ ++  L       LE
Sbjct: 4   LLVEDDASLGEGILTSLKPEGYTVDWVRDGSSALHALTHESFGLAVLDLGLPR--LDGLE 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           + R +RA  +  P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  VLRQLRAAENPTPVLVLTARDTIADRIAGLDAGADDYLVKPFDVAELKARLRALLRRSFN 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E   I +    +     G+   L R+E  +L  L+A  G+ + + ++   +YG 
Sbjct: 122 RPQPALEYRGITLDPASQLVTWNGQTVSLQRKEFILLHELIAQPGRVLTRDKLQQVLYGW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +EA E N +E HI  LRKK       + + + R +GY +D
Sbjct: 182 GEEA-ESNALEVHIHHLRKK----FFPELIRTVRGVGYLVD 217


>gi|295688443|ref|YP_003592136.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295430346|gb|ADG09518.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 223

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D             + G  +E     E    +      DV  ++  +    G +V
Sbjct: 3   ILIIEDDLEAAGAMAHGLTEAGYEVEHAPDGEAGLGVAQKGGFDVLIVDRMMPKMDGVQV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R  R   Q P++ +S    +   +    +G DD + KP    E++ARV A+ RR +
Sbjct: 63  VETLR--REGDQTPVLFLSALGEINDRVTGLRAGADDYLVKPYAFPELMARVEALSRRRE 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +    R    QG+   L  RE ++LE++M + G+ V +T +   ++
Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +    + NV++ HIS+LR K+        + + R  GY +D
Sbjct: 181 -EYHFDPQTNVIDVHISRLRSKIDKGFDRAMLQTVRGAGYRLD 222


>gi|222836662|gb|EEE75055.1| predicted protein [Populus trichocarpa]
          Length = 234

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          DG+++     L        +   D   ++  L       L+
Sbjct: 8   LLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPD--GNGLD 65

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +R A + VPL+ +S        +   + G DD + KP   RE++AR  A+ RR + 
Sbjct: 66  WCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRAQR 125

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                            + + G+   +QG    L RRE ++L  L+   G+ +++  +  
Sbjct: 126 LQPAPTASAAPADAMFSIDTQGQRVRMQGVALDLTRREYQLLRCLLERPGRILSREFLLD 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +I+G  D    +  V++H+  LR KLR      D + + R +GYS+
Sbjct: 186 SIWGQ-DSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 230


>gi|167769243|ref|ZP_02441296.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
           17241]
 gi|167668883|gb|EDS13013.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR----EDVSAIEAFLIGKG 57
            ++ +D   ++    +         EGF  +E  +  Q+  +    EDV  +   ++   
Sbjct: 5   ILVAEDEEKIRRLVSSYLVR-----EGFKVVEAADGQQAVEKFEDNEDVVLVMLDVMMPK 59

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +   +  R IR  S VP++ ++   S Q  +  F +G D+ + KP     ++ RV  + R
Sbjct: 60  KDGYDACREIRGKSNVPILMLTARDSEQDEVAGFGAGADEYIAKPFSPTILVTRVKNLLR 119

Query: 118 RLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   ++ +    G ++V    R   V G+      +E  +L YL+ N    + + QI   
Sbjct: 120 RTSSNDMSDVSAGGVKVLYRERTVTVDGKKIITTPKEFDLLYYLIRNTNIVLTRDQIICT 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++ + D A ++  V++HI  LR KL        + + R +GY  +W
Sbjct: 180 VWDM-DYAGDDRTVDTHIKCLRAKLGPY--AKCIVTVRKVGYKFEW 222


>gi|229175383|ref|ZP_04302898.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
 gi|228608215|gb|EEK65522.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
          Length = 229

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    LQ + +ED + I   ++       
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGET--GLQMALQEDYNLIILDIMLPKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEISFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|227510515|ref|ZP_03940564.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227513524|ref|ZP_03943573.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083397|gb|EEI18709.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227190167|gb|EEI70234.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 228

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +    L     LQ++  E+   I   L+      +
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYDTQV--ELNGRTGLQAALDENFDVILLDLMLPELNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +  FD G DD + KP    E+LAR+ A+ RR+++
Sbjct: 62  EVARRLREKKNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N++            + +  + R      EV  L +RE  +L  LM N    +A+  + 
Sbjct: 122 ENDQQKSSKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G +D  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 TKVWG-YDSEVETNVVDVYIRYLRNKIDRPGENSYIQTVRGTGYVM 226


>gi|148264043|ref|YP_001230749.1| two component heavy metal response transcriptional regulator
           [Geobacter uraniireducens Rf4]
 gi|146397543|gb|ABQ26176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter uraniireducens Rf4]
          Length = 223

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G +++  N  E    L  S   D+  ++  L   G    
Sbjct: 3   ILVVEDEIKTSAFLRKGLRESGFTVDVANDGEEGLDLALSREYDLIILDVMLP--GVDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR      P++ ++   ++Q  +   + G DD + KP    E+LAR+  I RR  
Sbjct: 61  QIIKRIRGTKRDTPVLFLTARDAVQDRIKGLELGADDYLVKPFAFSELLARIRTILRRGP 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V          + +   G      G+   L  +E  +L  L    G+ + +T+I   I+ 
Sbjct: 121 VRTLELIRIADLEIDLMGHRVMRGGKRLDLTPKEFALLSLLARRTGEVLTRTRIAERIWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D   + NVV+ H+ +LR K+ +      + + R +GY ++
Sbjct: 181 I-DFESDTNVVDVHMRRLRAKVDDPFEHKLIHTVRGVGYVLE 221


>gi|255314146|ref|ZP_05355729.1| two-component response regulator [Clostridium difficile QCD-76w55]
          Length = 234

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 103/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +  G       +G S++    L   + + SS    +  ++  L        
Sbjct: 4   LLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTLPD--GTGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  SQVP+I ++        +   D G DD + KP   RE+++R+ A+ RR   
Sbjct: 62  ELCKYIRGFSQVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKGN 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       + G + +++         +   L   E ++L  L+ N+   +++TQI   +
Sbjct: 122 TSEENKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
           + +  + V +N +  +I +LR+K+ + L     +++ R +GY 
Sbjct: 182 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYK 224


>gi|256371881|ref|YP_003109705.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008465|gb|ACU54032.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 225

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 11/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKVL 61
           ++++D   + D     F  +   +   ++   E+ L +  A   +  ++  L G+    L
Sbjct: 6   LVVEDDPAIADLLCVYFAKEEGEVRVVSN--GEDALSAFDASVTLVILDLNLPGR-LDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I +S   +    +   + G DD V KP   RE+LARV AI RR++ 
Sbjct: 63  EVARAIRHRSTVPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARVRAIERRVEA 122

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S        +      R     G    L  RE  +L Y  A+    + + ++   ++
Sbjct: 123 NPSSAAALSFNGVDWDPRARQVLRDGVPVALTNREFDLLGYFFAHPATALTRRELLDGVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  +   ++  V+ H+ +LRKKL   +    + +   +GY  D
Sbjct: 183 GP-EWYGDDRTVDVHVLQLRKKLGGAIA---ISTVWGVGYRFD 221


>gi|251799571|ref|YP_003014302.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547197|gb|ACT04216.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 233

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 99/231 (42%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G  +    +    E ++  A+E V  +   ++      L
Sbjct: 6   ILIADDDLEIAELIKIYLTNEGYQV--LIAGNGREAMELIAKESVQLMILDVMMPEMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +RA   +P++ +S        +    +G DD + KP +  E++ARV ++ RR   
Sbjct: 64  EVVRAVRAEYGIPILMLSAKAEDMDKIMGLTTGADDYMVKPFNALELIARVKSLLRRSIY 123

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  +   +++        V+     L   E  IL  L ++ G+  +   
Sbjct: 124 LNTQLQTAQDQDIIQIHSLKISKKSHTVTVEDRGINLTSTEFDILYLLASHPGQVFSAEA 183

Query: 173 IFSAIYGLFDEAVEE-NVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           IF A++   D  +E  N V  HISKLR KL ++LG    + +   +GY I+
Sbjct: 184 IFEAVWK--DRFLESNNTVMVHISKLRDKLESELGGVKLIQTVWGVGYKIE 232


>gi|160879116|ref|YP_001558084.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427782|gb|ABX41345.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 225

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +   ++   S      L      D+  ++  +       L
Sbjct: 5   ILIVDDDKDISELIAVYLKSEDYYVDKACSGLEALQLIKENNFDLVILDIMMP--KMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I ++        +     G DD ++KP    E++ARV A  RR  +
Sbjct: 63  ETLIHIRKDFNMPIIFLTAKNQEIDLIRGLSLGADDYISKPFSSMELIARVKAQLRRYTI 122

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                NN    G + +  D     V G+   L   E +ILE    N+    +  QI+  I
Sbjct: 123 FNNLDNNDISIGELVLSLDMHRVTVAGKEVKLTPTEYKILELFCRNKNIVFSVEQIYENI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     AV +  +  HI+KLR+K+  +    + + +   +GY I
Sbjct: 183 W-RDKFAVGDTSIMVHITKLRQKIEKDPKNPEYIKTVWGVGYKI 225


>gi|215488353|ref|YP_002330784.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|331684666|ref|ZP_08385258.1| transcriptional regulatory protein QseB [Escherichia coli H299]
 gi|215266425|emb|CAS10863.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O127:H6 str. E2348/69]
 gi|331078281|gb|EGI49487.1| transcriptional regulatory protein QseB [Escherichia coli H299]
 gi|332086683|gb|EGI91823.1| transcriptional regulatory protein qseB [Shigella boydii 5216-82]
          Length = 219

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSIDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|126702209|gb|ABO26808.1| PmrA [Legionella feeleii]
          Length = 222

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 9/214 (4%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AH 70
            D   A     G  ++     E       S   ++  ++  L       L   + IR   
Sbjct: 13  GDAVKAGLTQFGYIVDWLKDGEAARAAVKSESFELIILDLGLPR--LSGLAFLQAIRHDD 70

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETG 129
           ++ P+I ++   S++  +   D+G DD + KP    E+ ARV A+ RR +  ++   +  
Sbjct: 71  NRTPVIILTARESVEDRVKGLDAGADDYMTKPFDLNELSARVRALVRRSQGRADAVLQYR 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +        V   +  +PRRE  +L+ L+ N G+ +++ Q+  +IYG +DE V+ N 
Sbjct: 131 NITLDPAAHSVYVDDVIVNVPRREFSLLQKLLENSGQVLSREQLMQSIYG-WDEDVDSNA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +E HI  LRKKL      + + + R +GY ++ N
Sbjct: 190 LEVHIHNLRKKL----NANFIRTIRGVGYMVEKN 219


>gi|332637342|ref|ZP_08416205.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 250

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 99/234 (42%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +               + +   +    +   L   G   +
Sbjct: 3   LLMVEDNTSVSEMMGMFFKKENWDASYAYDGNDAVAMFNEEPDAWDMVILDLNLPGLDGM 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IR  S+ VP+I ++   S    +   + G DD V KP     ++AR+ A++RR +
Sbjct: 63  QVAVKIREVSKHVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRRSE 122

Query: 121 VSNNRA------------ETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKR 167
            +   A            +T   ++ S+ R+  + G +   L  +E  +L  L   + + 
Sbjct: 123 TAGQPASSEPQVHEDFDVQTRTFKLNSNTREAYLNGNLIQDLTPKEFDLLRVLAKKQRQV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ Q+   ++  ++   +E  V++H+ KLR+K+  K+G   + +   +GY  D
Sbjct: 183 FSREQLLQLVWD-YEYFGDERTVDAHVKKLRQKIE-KVGPQVIQTVWGVGYKFD 234


>gi|330467983|ref|YP_004405726.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328810954|gb|AEB45126.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 259

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 84/221 (38%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +++         G  ++             +   D+  ++  L   G   L+
Sbjct: 39  LVVEDDASIREVTALGLRRAGFRVDTAADGRQGLAAWRAGSVDLIVLDVLLP--GLDGLQ 96

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK 120
           + R IR  + VP++ ++        +   + G DD + KP    E++ARV ++ RR    
Sbjct: 97  VCREIRRSNAVPILMLTARTDTIDVVVGLECGADDYLRKPFDLPELVARVRSLLRRAVAA 156

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +          G   PL   E R+L  L    G+   +  +   ++  
Sbjct: 157 PEPGPLRIGRLEIDPGAFVARRDGHELPLTATEFRLLLELARRPGQVFTRELLLERVWEQ 216

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                +  +V+  + +LR K+ +       + + R  GY +
Sbjct: 217 G-YLGDSRLVDVAVQRLRAKVEDDPASPRLIRTVRGAGYKL 256


>gi|293377150|ref|ZP_06623359.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
 gi|292644239|gb|EFF62340.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
          Length = 226

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +  S+  + ++     L+   + +   +   L+      L
Sbjct: 3   ILIVDDEEKILEIIDAYLVANHYSV--YKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        L     G DD + KP   +E++AR+  + RR + 
Sbjct: 61  TVCRKIREISNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTET 120

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N     +    + V+ D R   +      L   E  IL  LM+   K  +++ +   +
Sbjct: 121 LSNPNKLSSNNKELIVYPDSRQVYLHQVELNLTPTEFDILHALMSTPNKVFSRSDLIEKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            G+ +    +  ++SHI  LR K+ N       + +    GY  
Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223


>gi|271966272|ref|YP_003340468.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509447|gb|ACZ87725.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 233

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G ++             +  R D+  ++  +         
Sbjct: 10  LVVDDEPNIRELLSEALELNGFAVRTAADGRQALEAVARERPDIIVLDVMMPAP--DGFT 67

Query: 63  LPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     PL+  ++   ++   +    +G DD V KP    E++ R+ AI RR++ 
Sbjct: 68  VARKLREAGDSPLLLFLTAKDAVSDRIAGLTAGGDDYVTKPFSLEEVVLRLRAIMRRMRP 127

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  + + G      + +          G    L   E  +L YLM N  + V+K QI   
Sbjct: 128 AQEQVDDGVLRYADLELDEQAHTVRRAGRAIHLSPTEFSLLRYLMINAERVVSKAQILDR 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   E  +VES+IS LR+K+ +  G   + + R +GY +
Sbjct: 188 VWD-YDFEGESRIVESYISYLRRKI-DAEGPPLIHTLRGVGYRL 229


>gi|258645821|ref|ZP_05733290.1| phosphate regulon response regulator PhoB [Dialister invisus DSM
           15470]
 gi|260403191|gb|EEW96738.1| phosphate regulon response regulator PhoB [Dialister invisus DSM
           15470]
          Length = 226

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +   ++D   ++D         G  +EGF   +        A  D+  ++  L   GE  
Sbjct: 2   LIYCVEDDESIRDLVGYALRGQGYGMEGFGCADDFYKGMKKAVPDLVLLDVMLP--GEDG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + + IR   + +P+I ++   S    +   D G DD V KP    E+L+R+ ++ RR 
Sbjct: 60  LSILKKIREREANIPIIMMTAKSSEFDVVRGLDLGADDYVIKPFGIMELLSRIRSVLRRS 119

Query: 120 -KVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            K++ N+ E    G IR   +     V  +   +  +E ++L YL+ N+G  +++ QI  
Sbjct: 120 GKMAENKGELLSFGTIRADRNRHVVTVDEKEVAVTLKEFQLLCYLLLNKGIVLSREQIMQ 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A++ +    +E   ++ HI  LR+KL  +     + + R +GY +
Sbjct: 180 AVWDIP-FEMESRTIDMHIMSLRQKLGGEGAA--IRTIRGVGYRL 221


>gi|218779275|ref|YP_002430593.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760659|gb|ACL03125.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 228

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   +S E       +   D+  ++  L   G   L
Sbjct: 6   ILIVDDEEDILELLKFNLEREGFKIFCADSGEKALEAVKNFSPDLVLLDLMLP--GIDGL 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R++++    S +P+I ++        +   + G DD V KP   R I+ARV A+ RR
Sbjct: 64  EVARVLKSKPNTSTIPIIMLTAKGDESDVVRGLELGADDYVTKPFSPRVIIARVRAVMRR 123

Query: 119 LKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +      E   I +    R+  V G+   L   E  IL YL    G    ++QI 
Sbjct: 124 NAAEPDDGIQAREVHGIGIHPGRREVAVNGKQIKLTMSEFDILHYLAQRPGWVFTRSQIV 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           SA+ G    AV +  V+  I  LRKKL        +++ R +GY +
Sbjct: 184 SAVRGEG-FAVTDRSVDVQIVGLRKKLGASG--KVIETVRGVGYRL 226


>gi|145593748|ref|YP_001158045.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303085|gb|ABP53667.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 230

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D         G  +      +      ++   D+  ++  L   G   LE
Sbjct: 6   LVVDDDRTVSDVVCRYLVHAGYQVRHVGDGDSALAAVAAEPPDLVVLDLMLP--GLDGLE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R +R     VP+I ++        +     G DD ++KP   RE++ RV ++ RR   
Sbjct: 64  VCRRLRTKPGGVPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLRRSGE 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + V +  R   + G    L  RE  +L YLM +  + + + ++   +
Sbjct: 124 PRTAPATVLRDGALVVETGPRVARLHGHELTLTVREFDLLAYLMRHPARALGRAELLERV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      +++ V  H+ +LR+K+  +      + +   +GY  +
Sbjct: 184 WGWN--FGDQSTVTVHVRRLREKVEADPANPHRIVTVWGIGYRYE 226


>gi|291166732|gb|EFE28778.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 228

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 106/224 (47%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D  +     +G  +  F++ +       +   D+  ++  +  +G   L
Sbjct: 4   ILIVDDEKRIRDLIVMYLKKEGYEVTDFDNADKAYEFLQNNEVDLLVLDIMM--RGMNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L + +R  S+VP+I +S        +   + G DD + KP   RE++ R+  I RR   
Sbjct: 62  DLCKKVRMTSEVPIIFVSARSEELDRILGLELGADDYLAKPFSVRELVVRIKNILRRTNA 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K  +N      +++F + R  +V  E   L  +E  +L+YL+ N+G  +++ +I   
Sbjct: 122 VVQKKEDNVLSVEDLKIFIEQRIVKVGEEEVALTTKEYEVLKYLVENKGYPLSRDKIIQN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G ++    +  V+  I +LRKKL++      + +    GY +
Sbjct: 182 IWG-YEYDGYDRNVDDTIKRLRKKLKDIESKVKIQTVWGYGYKV 224


>gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V+DG        G  +    + E       S R D   ++  L   G   LE
Sbjct: 5   LIIEDDRAVRDGVRLALRRQGHEVAAAATGEDGLEQLRSFRPDAVVLDLMLP--GMSGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRAH QVP+I  +        +   ++G DD V KP+  R + AR+ A+ RR+  +
Sbjct: 63  VCRRIRAHDQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVLRRVGGT 122

Query: 123 NN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +          G + +   G     QG    L   E R+L  L A+ G+  ++ Q+  A
Sbjct: 123 ADDQGTPRTEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++   +   +  +V++ + +LR K+  +      V + R  GY  
Sbjct: 183 VW-EHNYHGDARLVDACVKRLRSKIGESPGSPRYVHTVRGFGYRF 226


>gi|116662230|ref|YP_829285.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116612982|gb|ABK05704.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 227

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  ++ +       ++G  ++  +      W  +    DV  ++  L  K     +
Sbjct: 4   LLVEDEKMLAETVRRGLVNEGFVVDVTHDGVSGLWAATENPYDVILLDLMLPLK--NGYD 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ ++         D FD G DD + KP     ++AR+ A+ RR   
Sbjct: 62  VLKELRERLVWTPVLMLTAKDGEYDQTDAFDLGADDYLTKPFSFIVLVARIRALIRRGAP 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R       V  L  RE  +L YLM + G+ V+K QI   ++  
Sbjct: 122 ERPVTLTVGSLTLDPGSRSVRRGDTVIELTAREYGLLHYLMRSHGQVVSKAQILDNVWDP 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E  + NVVE +I  LR+K+    G   + + R +GY +
Sbjct: 182 AFEGGD-NVVEVYIGYLRRKIDVPFGLQTLATVRGMGYML 220


>gi|227510397|ref|ZP_03940446.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190049|gb|EEI70116.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 96/225 (42%), Gaps = 4/225 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +  ++      +       S R  ++ I    +      L
Sbjct: 16  ILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPKLDGL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR +  +P++ ++    +   +   D+G DD + KP    E+LAR+  + R  + 
Sbjct: 76  EVLRRIRQNDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLRHSQN 135

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++      + + +  R       +  L +RE  +L  L+ N G+ + + ++ + ++
Sbjct: 136 QATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYELLLTLIKNAGETMTRDELLNLVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G+ D   + NVV+ +I  LR K+        + + R +GY +  N
Sbjct: 196 GV-DFEGQPNVVDVYIRYLRNKVDRNFKKTLIHTVRGVGYVLSAN 239


>gi|206576950|ref|YP_002240552.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
 gi|206566008|gb|ACI07784.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
          Length = 229

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   + D  + +   +G  +  F          +    DV+ ++  L        
Sbjct: 6   IWLVEDEQSIADTLVYMLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGLPD--ISGF 63

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +   +  +P++ ++        L   + G DD + KP   RE+ ARV  + RRL+
Sbjct: 64  ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G   +          G+   L R E  +L+ L+   G+  ++ Q+   +
Sbjct: 124 KFAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    E+++   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WSDAWESLD-RTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSL 226


>gi|253699900|ref|YP_003021089.1| transcriptional regulator [Geobacter sp. M21]
 gi|251774750|gb|ACT17331.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 225

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +        +G      +            + D+  ++  L   G    E
Sbjct: 5   LVIEDEKDLAELVAFHLEQEGYCCLVAHDGAAGLAEARRCKPDLILLDLMLP--GMMGTE 62

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           + R ++     + +P+I ++        +  F+ G DD V KP   RE++ RV A+ RR 
Sbjct: 63  VCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRK 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +  +     V GE   L   E ++L  L    G+  ++  +   +
Sbjct: 123 LPAAEGATISLGTLLIDVERHLVRVAGEEVQLTSTEFKLLMNLAERIGRVQSRELLLQNV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +    +   V++H+++LR KL      + + + R  GY ++ +
Sbjct: 183 WG-YSYLGDTRTVDTHMTRLRTKLGAAG--ELIKTVRGFGYKLEES 225


>gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 239

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D A + D      GD+G  +    S +     L+     D   ++  L   G   L
Sbjct: 7   LIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLP--GVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ +  RA ++ VP+I IS   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     E G +++    R   V G    L  RE  +L +   +  +  A+ ++
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNQVWG-YQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKL 231


>gi|149072098|ref|YP_001293493.1| OmpR-like protein [Rhodomonas salina]
 gi|134303049|gb|ABO70853.1| OmpR-like protein [Rhodomonas salina]
          Length = 248

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++    + + EE L    +E+ + I   ++       
Sbjct: 12  ILVVDDEASIRRILETRLSMIGYNV--VTAADGEEALNLLKKENPNLIVLDIMIPKLDGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + IR  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 70  GVCQEIRKESDVPIIMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRSVLRRVER 129

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++     G + +  + R          L   E  +LE L++  G+  ++  I
Sbjct: 130 VHFNPGIPTSGVMTVGFLTIDMNKRQVYKSNNRIRLTGMEFNLLELLVSKSGQAFSRADI 189

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
              ++G   +  V+  VV+ HIS+LR KL +     D + + R  GY
Sbjct: 190 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGY 236


>gi|163941207|ref|YP_001646091.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863404|gb|ABY44463.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R   +
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--ARHIGTVIRVGYKFE 224


>gi|75760731|ref|ZP_00740754.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491786|gb|EAO54979.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 233

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 8   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLP--KMNGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 66  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 125

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 126 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 186 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 233


>gi|296104675|ref|YP_003614821.1| two-component system, OmpR family, response regulator QseB
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059134|gb|ADF63872.1| two-component system, OmpR family, response regulator QseB
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 219

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F   +  +    SA  D   ++  L       L
Sbjct: 3   ILLVEDDKLIGDGIKAGLSKMGFSVDWFTDGKTGQAALCSAPYDAVVLDLTLPE--IDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R  R   +  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  AILRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRSH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + +        ++GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQTRSELRHGKVTLDPTSLIATLEGETLALKPKEFALLELLMRNAGRVLPRKAIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 180 TWDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 216


>gi|229174262|ref|ZP_04301795.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228609119|gb|EEK66408.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 225

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIVLTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFE 224


>gi|254427358|ref|ZP_05041065.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alcanivorax sp. DG881]
 gi|196193527|gb|EDX88486.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alcanivorax sp. DG881]
          Length = 234

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +    + +    +    R D+  ++  L       +
Sbjct: 6   ILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSV--TGI 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R ++     ++VP+I ++        +   D G DD + KP   RE+++R+ A+ RR
Sbjct: 64  ELARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLRR 123

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +    E   + +               +   E R+LE+ M+++ +  ++TQ+   
Sbjct: 124 ASSVAAEKAIEVEGLCLDPVSHRISADDYPVDMGPTEYRLLEFFMSHQERAYSRTQLLDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  VE+  ++ HI +LRK L        + + R  GY  
Sbjct: 184 VWGA-NVYVEDRTIDVHIRRLRKALAPFDYDRFIQTVRGTGYRF 226


>gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
          Length = 220

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++E  +         ++   D+  ++  +        
Sbjct: 5   ILVVEDDLEIQELIKQFLMTQNYNIEVASDGVEGIKRLNTQSFDLILLDVMMPN--LNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +++R HS +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 63  EVAKMLRNHSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNH 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  N      + V  DG    V  E  PL  +E  IL+ L+ N  K + +  I   ++G
Sbjct: 123 KSWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D + E  ++++HI  LRKKL        + + + +GY ID
Sbjct: 183 -YDYSGETRMIDTHIKNLRKKL----NLPYIKTVKGIGYKID 219


>gi|15893854|ref|NP_347203.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023431|gb|AAK78543.1|AE007571_9 Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           ATCC 824]
 gi|325507981|gb|ADZ19617.1| Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           EA 2018]
          Length = 233

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 19/233 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE---EWLQSSAREDVSAIEAFLIGKGEK 59
           +++DD   ++D       +     EGFN ++ E   E L+     +V  +   ++     
Sbjct: 7   LVVDDEKEIRDLIGIYLNN-----EGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMD 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +     IR     P+I +S        +    +G DD ++KP +  E++ARV +  RR 
Sbjct: 62  GITTCMKIREDKNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRRY 121

Query: 120 KVSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              N+         E G I + +D  + ++      L +RE  IL  L  N+G   +  +
Sbjct: 122 TKLNSTYESNSANIEVGEITINTDTHEVKIGDRTVSLTKREFDILVLLSRNKGVVFSTEK 181

Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           I+ +++   +E  +  N V  HI K+R+K+  N    + + +   +GY I+ N
Sbjct: 182 IYESVW--HEEFYDCHNTVMVHIRKIREKIEKNPRKPEYIKTVWGVGYKIEKN 232


>gi|331701554|ref|YP_004398513.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128897|gb|AEB73450.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 228

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +    L     LQ++  E+   I   L+      +
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYDTQV--ELNGRTGLQAALDENFDVILLDLMLPELNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +  FD G DD + KP    E+LAR+ A+ RR+++
Sbjct: 62  EVARRLREKKNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N++            + +  + R      EV  L +RE  +L  LM N    +A+  + 
Sbjct: 122 ENDQQKNNKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G +D  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 TKVWG-YDSEVETNVVDVYIRYLRNKIDRPGENSYIQTVRGTGYVM 226


>gi|323489661|ref|ZP_08094888.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2]
 gi|323396792|gb|EGA89611.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2]
          Length = 238

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 87/231 (37%), Gaps = 14/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +G  +E   +      +          ++  +  K    + 
Sbjct: 8   LVVDDEERIRRLLKMYLEREGYVVEEAENGVQALDMALEKDYHCILLDLMMPEK--DGVA 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           +   +R     P+I ++        ++ F++G DD + KP   RE++ RV AI RR    
Sbjct: 66  VATELRETKMTPIIMLTAKGEEANRVEGFEAGADDYIVKPFSPREVVLRVKAILRRSAAY 125

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S +      + +  D       G    L  +E  +L +L     K   +  +
Sbjct: 126 SPISNSTASKDLVVFPHLTIDHDAHRVTADGVEVNLTPKEYELLYFLAKAPDKVFDREHL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
              ++  +D   +   V++H+ +LR+KL   ++     + +   +GY  + 
Sbjct: 186 LKEVW-HYDFFGDLRTVDTHVKRLREKLNRVSESAAKMIVTVWGVGYKFEV 235


>gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 234

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +   ++           R D+  ++  L        
Sbjct: 10  LLVVEDEPNILELLSASLRYAGFEVTTASTGTEAVAAAQRRRPDLIVLDVMLPD--MDGF 67

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   SQ P++ ++   + +  +     G DD V KP    E++AR+ A+ RR  
Sbjct: 68  EIVRRLRGCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRRTA 127

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V   R     I +  +  +    GE   L   E ++L +LM N G+ ++K QI   
Sbjct: 128 GDPYVPPPRLTFADIELDEESHEVWRGGEPIMLSPTEFKLLRFLMLNAGRVLSKGQILDH 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   D    E +VES++S LR+K+ +K     + + R +GY +
Sbjct: 188 VW---DHVRGEGIVESYVSALRRKI-DKDRPRLIHTIRGVGYVM 227


>gi|229194199|ref|ZP_04321055.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
 gi|228589290|gb|EEK47253.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
          Length = 229

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    LQ++ +ED   I   ++       
Sbjct: 4   ILLIEDEVSIAELQRDYLEINNFQVDVEHSGEI--GLQTALQEDYDLIILDIMLPKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|57650905|ref|YP_187163.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           COL]
 gi|151222475|ref|YP_001333297.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|81693861|sp|Q5HDJ4|HSSR_STAAC RecName: Full=Heme response regulator hssR
 gi|187609572|sp|A6QJK3|HSSR_STAAE RecName: Full=Heme response regulator hssR
 gi|57285091|gb|AAW37185.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           COL]
 gi|150375275|dbj|BAF68535.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
          Length = 224

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    + +      S E    L    R D++ ++  +   G    +
Sbjct: 5   LVVDDDPRILNYIASHLQIEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMM--DGMDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L   ++    +P+I ++   +L      F SG DD V KP   +E++ R+ A+ RR  + 
Sbjct: 63  LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN+    G + +     + +V  +   LP +E ++L  L A   +   + QI   I+G +
Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LR++L+       +++ R  GY ++
Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221


>gi|23464633|ref|NP_695236.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|46190381|ref|ZP_00206445.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189438868|ref|YP_001953949.1| response regulator [Bifidobacterium longum DJO10A]
 gi|227546731|ref|ZP_03976780.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239620707|ref|ZP_04663738.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312132322|ref|YP_003999661.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481711|ref|ZP_07940743.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689673|ref|YP_004209407.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691634|ref|YP_004221204.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23325190|gb|AAN23872.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189427303|gb|ACD97451.1| Response regulator [Bifidobacterium longum DJO10A]
 gi|227212693|gb|EEI80574.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239516283|gb|EEQ56150.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291516232|emb|CBK69848.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311773616|gb|ADQ03104.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916825|gb|EFV38215.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456490|dbj|BAJ67112.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461009|dbj|BAJ71629.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 243

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQEGINAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+      D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238


>gi|300867627|ref|ZP_07112275.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
 gi|300334388|emb|CBN57445.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
          Length = 413

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         +   +++     +       +   D+  ++  L       + 
Sbjct: 4   LLVEDDEYIAHALSTTLTEQHYTVDVAYDGQAGWEYAEAFTYDLILLDVVLP--KLDGIS 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R+ H+  P++ ++   S  + ++  D+G DD V KP    E+ AR+ AI RR   
Sbjct: 62  LCRQLRSRHTTTPILLLTSCDSSASKIEGLDAGADDYVVKPFDFLELSARIRAILRRGSA 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     ETG +R+  +  +     +   L  +E  +LE  + N  +  ++  I   ++  
Sbjct: 122 ALPPILETGKLRLNPNNYEVIYNSQPLNLTPKEYALLELFLRNTQRVFSRRAILDHLW-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           F+E   E+ V +HI  LR KL+      D V++   LGY +
Sbjct: 181 FEEPPAEDTVRAHIKGLRSKLKAAGAPPDLVETVYGLGYRL 221


>gi|229070657|ref|ZP_04203894.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228712479|gb|EEL64417.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 228

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++    +++ +E L      +V  I   ++       
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNV--LEAIDGKEALSIFEEHEVHLIILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  TVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I V    R   + GE   L   E  I+ YLM N+G  +++ Q+ +
Sbjct: 123 SAVNVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225


>gi|323340668|ref|ZP_08080920.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091791|gb|EFZ34411.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 228

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +   +    E L ++  ED  AI   L+      L
Sbjct: 4   ILIIEDEDNLSNFVSLELQHEGYETKVCENGR--EGLDTALNEDWDAILLDLMLPELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD V KP    E+LAR+ A+ RR+  
Sbjct: 62  EVCRRLRQSKSTPIIMMTARDSVIDRVSGLDHGADDYVVKPFAIEELLARLRAVLRRVDF 121

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+             + +  + R      E+  L +RE  +L  LM N    +A+  + 
Sbjct: 122 ENDNGTTKQTTVTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G ++  +E NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 KKVWG-YESQIETNVVDVYIRYLRNKIDRPGEDSYIQTVRGTGYVM 226


>gi|283795144|ref|ZP_06344297.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1]
 gi|291076787|gb|EFE14151.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1]
          Length = 224

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 13/226 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M ++I+D   +++   A   D G ++    + LE  E  +++ + D+  ++  L      
Sbjct: 4   MILIIEDEESIQNIIKAFLEDAGYTVVLAADGLEGIEQFRAN-KPDLVLLDLMLP--KID 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              +  I+R  S+VP+I ++      + +  FD+  DD + KP     ++  + A+ RR 
Sbjct: 61  GFAVCEILRKESRVPIIMLTALDDEDSQMKGFDALADDYITKPFSMPVVMKHIEAVLRRA 120

Query: 120 KVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +      N       I V +D     V      L  RE  IL+ L+ N+G+ V++ ++  
Sbjct: 121 EQGGAAPNTVIRYKEITVDTDSLTVLVGTGSVSLTTREFEILKLLLENQGRVVSRERLLD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G +D   +E +V +HI  +RKKL    G D +++ R  GY I+
Sbjct: 181 TVWG-YDYIGDEKIVNTHIKNIRKKL----GVDYIETMRGAGYKIE 221


>gi|210618151|ref|ZP_03291916.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
 gi|210148975|gb|EEA79984.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
          Length = 223

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++     L  + G  +   N  +  E L    ++  S I   ++       
Sbjct: 5   ILIIEDEKAIQSVLYELLTEAGYRVTLAN--DGLEGLSQFEKQYFSLILLDIMMPKIDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +  IIR +S +P+I ++     +  +  F+   DD + KP   + +L R+ A+ RR K 
Sbjct: 63  AVCEIIRKNSDIPIIMLTAMDEEEAQVKAFELQADDYITKPFSLKLVLMRIEAVLRRTKE 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N   +  I++ ++    EV G+   L + E  ILE  M +R + + +  + + ++
Sbjct: 123 KVENHNIFISHGIKLDTNRHTVEVNGKEINLTQLEFDILEVFMKHRNQVLTRDNLINQVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +E  V  H+  LR+KL      D + + R +GY  +
Sbjct: 183 G-YDFTGDEKAVNIHVMNLRRKLD----IDCIQTVRGVGYKFE 220


>gi|229845243|ref|ZP_04465376.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1]
 gi|229847329|ref|ZP_04467431.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1]
 gi|229809754|gb|EEP45478.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1]
 gi|229811838|gb|EEP47534.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1]
          Length = 221

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L       L
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMVALTSAPYDAVVLDLTLP--KLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           ++ +  R+ H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A+  RR 
Sbjct: 61  DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E   +++  + R   +  +   L  RE ++LE  M N+ + +++T I   +  
Sbjct: 121 GHHHSVIEQSGVKLDQNQRFVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKL-S 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 216


>gi|227873737|ref|ZP_03991967.1| response regulator [Oribacterium sinus F0268]
 gi|227840417|gb|EEJ50817.1| response regulator [Oribacterium sinus F0268]
          Length = 233

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +         G  +E     E           D+  ++  L   G    
Sbjct: 7   ILIVEDEASIAELEKDYLELSGFQVETEGDGEKGLKKALEGNYDLLILDLMLP--GRDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + + +R+   +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 65  SITQEVRSKKDIPILLVSARRDDIDKIRGLGLGADDYMTKPFSASELVARVKAHLARYTR 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K  N   E   +++ +  R   V GE  P   RE  +L +L A+  +   K ++F
Sbjct: 125 LRDSGKEENEIIEIRGLKIDTTARRVFVNGEEVPFTSREFDLLAFLAAHPNRVYTKEELF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI KLR+K+   N +    +++   +GY  
Sbjct: 185 QEIWKM-ESIGDIATVTVHIKKLREKIEMENAVKPQYIETIWGVGYRF 231


>gi|226310545|ref|YP_002770439.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093493|dbj|BAH41935.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 251

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   +          +  ++   +       L      DV  ++  L   G   + 
Sbjct: 31  LLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLP--GLDGIA 88

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR+  + P+I ++   S+   +   DSG DD + KP    E+LAR+  ++RR +  
Sbjct: 89  VCQKIRSVKKTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEEQ 148

Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N   T      + V  +GR      +   L +RE  +L   M N  + + +  +   ++
Sbjct: 149 ENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTVW 208

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G F+ AVE NVV+ ++  LR K+        + + R +GY +
Sbjct: 209 G-FEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGYVM 249


>gi|218439789|ref|YP_002378118.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218172517|gb|ACK71250.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 234

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 90/233 (38%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  S +   S      +    + D+  ++  L   G   L
Sbjct: 3   ILIVEDEPEIAQLIRETLERENFSCQIAKSGTQALEIFGQLQPDLIILDLMLP--GLDGL 60

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   IR         ++ ++        +    +G DD + KP    E++ARV A+ RR
Sbjct: 61  EVCTRIRQKPGAKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRR 120

Query: 119 LKVSNNRAE----TGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVA 169
                 + +    T    V  D             E+  L   E  +L   M+  G+  +
Sbjct: 121 SLRHGGQVQQIYRTSHFTVDLDQHIATRQLDNEDSEILDLTTLEFNLLSTFMSYPGRVWS 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +TQ+   ++G  D   +E VV++HI +LRKK+  +      + +   +GY  +
Sbjct: 181 RTQLIDKLWGN-DFFGDERVVDTHIRRLRKKVEPDPANPSFIKTVIGVGYKFE 232


>gi|89889297|ref|ZP_01200808.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
 gi|89517570|gb|EAS20226.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
          Length = 238

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 101/231 (43%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       D    +E  N  +    L+ +  +D   I   L       +
Sbjct: 10  ILIVEDDLEIVDLLEIHMKDLNAEVESVN--DGLSALEKAQHKDFDLILLDLSIPKLNGV 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++        +   + G DD + KP   RE+ AR  A+ RR   
Sbjct: 68  EVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDA 127

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +N +         + G ++V  + R   ++G+   L  +E  +L  L    G+  +++++
Sbjct: 128 ANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSEL 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
              I+G ++ +  E+ V SHI++LR K+   +G    + +   +GY  + +
Sbjct: 188 LDVIWG-YNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237


>gi|46190306|ref|ZP_00206421.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
          Length = 248

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 99/236 (41%), Gaps = 21/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
             ++DD   + +    +  ++G  ++   + L   E      + D+  ++  L   G   
Sbjct: 12  IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIV-KPDLILLDVMLP--GLDG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IRA S VP+I ++        +   ++G DD V KP    E+LAR+ A +R  K
Sbjct: 69  TEVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAK 128

Query: 121 VSN---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
            +                N  E GPI +          G+   L   E  +L  L A  G
Sbjct: 129 PAAEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAG 188

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           + ++++ +   ++G ++ + +  +V  H+ +LR K+ +      +  + R +GY  
Sbjct: 189 EAISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 243


>gi|317493615|ref|ZP_07952036.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918558|gb|EFV39896.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 220

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G     G++  + +  ++    + LQ   +  +  ++  L        
Sbjct: 3   ILIVEDDELIQQGLAKALGNESYACDCASTAAQAKSLQQVGQYSLIILDLGLPD--LDGA 60

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R   R+   VP++ ++   +++  ++  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  SLLRQWRRSGVDVPVLVLTARDAIEDRVEGLDAGADDYLVKPFALVELQARVRALIRRFQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  +   I +    +     G    L  +E  +L  LM   G+ V +  +   +Y 
Sbjct: 121 GHSDNLLQVENIILNLSTQQVLFDGSQIELTPKEFALLSRLMMRAGQTVNREILQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ +  N +E HI  LR+KL    G + + + R +GY ++
Sbjct: 181 WQDD-LSSNTLEVHIHNLRRKL----GKERIKTVRSVGYRLE 217


>gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 241

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +E   S         + + D   ++  +   G    
Sbjct: 16  ILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILDVMMP--GMDGF 73

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L R +RA   + P + +S   S++  ++    G DD V KP    E++AR+  + RR  
Sbjct: 74  GLLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRRSG 133

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   +R     I +  +  +    G +  L   E  +L Y M N G  ++K +I  
Sbjct: 134 FDATEKQASRITFADIELDDETHEVFKAGNLVSLSPTEFTLLRYFMVNAGTVLSKPRILD 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   E NVVES++S LR+KL +      + + R +GY +
Sbjct: 194 HVWN-YDFGGEVNVVESYVSYLRRKL-DTGDKRLIHTLRGVGYVM 236


>gi|154499723|ref|ZP_02037761.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
           29799]
 gi|150271321|gb|EDM98578.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
           29799]
          Length = 227

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D   + DG        G +++   +++    L  S   D+  ++  L        
Sbjct: 4   ILYVEDDLSLIDGLQYTLESSGYAVDNARTVKEALSLFRSNHYDLLLLDVTLPD--GTGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + +R+ S +P+I ++      + +   D G DD + KP    E+L+R+ A+ RR   
Sbjct: 62  DVCKEVRSSSTIPIIFLTASDQEISIVKGLDMGGDDYITKPFKLNELLSRIKALLRRSLQ 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    E   IRV ++ R     GE   LP  E ++L   M N    + +  I   ++
Sbjct: 122 FSKAETILEANGIRVDTNERLVWKNGEPVDLPLVEYKLLCLFMKNPNHLMPREMILDRMW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
                 V++N +  +I +LR K+ +       + ++R +GY 
Sbjct: 182 DGNGNFVDDNTLSVYIRRLRNKIEDTPNAPKYLLTERGIGYK 223


>gi|221064867|ref|ZP_03540972.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220709890|gb|EED65258.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 229

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +      G++G  ++  ++      L +    D+  ++  L   G   L
Sbjct: 3   LLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLP--GIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +   +R   Q P++ ++    ++  +    +G DD + KP    E++AR+ A+ RR   
Sbjct: 61  AVLAALRQSRQTPVLMLTARAQVEDRVRGLQAGADDYLVKPFAFSELVARIHALLRRGLQ 120

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +          G+   L  +E  +L  L+  +G+ +++T++ S 
Sbjct: 121 AQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +   E NVVE  + +LR KL        + + R +GY ++
Sbjct: 181 VWDM-NFDSETNVVEVAVRRLRLKLDAPFEQPLLHTVRGMGYVLE 224


>gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 242

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E           D+  ++  +        
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYEVVTAADGEEALNTFRDTEPDLVVLDVMMP--KLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR   
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRFDK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+     G I++ ++ R      E   L   E  +LE L+   G+  ++++I 
Sbjct: 126 VGAAGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVRRSGEPFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|295697075|ref|YP_003590313.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412677|gb|ADG07169.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 237

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 16/233 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G +++   S E  +        D+  ++  L   G   L 
Sbjct: 5   LIVDDEPAIVELVSWHLKKAGYAVDTAESGEEADRKVREGNVDLVVLDVMLP--GMDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R  R     +P+I ++        +   D G DD V KP   RE+++RV A+ RR   
Sbjct: 63  LCRSWRDDGIGIPVIFLTARDDEVDRVLGLDLGGDDYVTKPFLPRELVSRVKAVLRRAAA 122

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S+ R          G + ++      EV G+   L  RE  +L  + +  G+   + ++ 
Sbjct: 123 SSRRQGGASHEIRVGDVVIWPQEYRVEVAGKPVQLTAREFTLLTVMASKPGRVWTRDELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY----SIDW 222
             ++G +  A +  +V+  +S LR K+         + + R +GY    S++W
Sbjct: 183 DRVWG-YTYAGDTRIVDVIVSHLRDKIEENPRKPRYITTVRGVGYGFGGSLEW 234


>gi|196228357|ref|ZP_03127224.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227760|gb|EDY22263.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 226

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V          +  +++     +    + S    D+  ++  L        
Sbjct: 3   ILLVEDEEKVARFITVGLKAERFAVDTARDGKTGLQMASLNPYDLLIVDLMLPE--INGT 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R   + VP++ ++   +L   +  F+SG DD + KP    E+L R+ A+ RR  
Sbjct: 61  ELIRRVRKQNTDVPIVVLTARDALSDKVANFESGADDYLTKPFAFAELLVRIKALLRRGA 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V   N  +   + +          G+   L  +E  +LEYL  N G+ +++T I   ++ 
Sbjct: 121 VPRANVIQIADLEIDRLAHQVRRGGQSIKLTAKEYGLLEYLATNAGRVLSRTMIVEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   N+V+ ++ +LR K+        + + R +GY I+ N
Sbjct: 181 QS-FEGLTNIVDVYVRQLRAKIDEPFDRKLIHTVRSVGYVINEN 223


>gi|149919419|ref|ZP_01907900.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
 gi|149819725|gb|EDM79150.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
          Length = 223

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD A + +      G +GV LE          + ++   DV  ++  +   G   LE
Sbjct: 6   LLIDDDARLFELLSGYLGQNGVELEHAVDGAAGLRVLANESHDVVLLDGMMP--GMDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + R +RA S +P++ ++        +   + G DD + KP   RE+LAR+ A+ RR+  +
Sbjct: 64  VLRRLRARSAIPVLMLTARGDEADRVVGLELGADDYIAKPFSSRELLARLRAVLRRMHPE 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V   R     +      R+  V+GE   L   E  +L  L+   G+ V +  +     G 
Sbjct: 124 VGRERLSANGVVALIGTREVRVEGEAASLTGLEFDLLVALLRRAGRVVTRAALLHEA-GR 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V E  V+ HISKLRKKL    G D + + R +GY  
Sbjct: 183 DDTVVSERTVDVHISKLRKKL----GGDKIKTVRGVGYVF 218


>gi|145637649|ref|ZP_01793304.1| transcriptional regulatory protein [Haemophilus influenzae PittHH]
 gi|145269172|gb|EDK09120.1| transcriptional regulatory protein [Haemophilus influenzae PittHH]
          Length = 221

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +      +SA  D   ++  L       L
Sbjct: 3   ILLIEDDNLIGNGLQIGLTKLGFAVDWFIDGKTGMAALTSAPYDAVVLDLTLP--KLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           ++ +  R+ H  VP++ ++   +L   +    SG DD + KP    E+ AR+ A+  RR 
Sbjct: 61  DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++  E   +++  + R   +  +   L  RE ++LE LM N+ + ++++ I   +  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKL-S 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 216


>gi|325292348|ref|YP_004278212.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325060201|gb|ADY63892.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 223

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGLPQ--MDGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    RA    +P++ ++        +   D+G DD V KP H  E+LARV A+ RR  
Sbjct: 61  TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+++ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSELVCGPVKLDTKSSKATVNGVTLKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL    G D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----GVDLIETIRGLGYRM 216


>gi|317055319|ref|YP_004103786.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447588|gb|ADU21152.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD A ++         +G  +    + +  E ++    +D   I   ++       
Sbjct: 4   ILAVDDEAKIRTIIREYAEFEGYEV--AEAADGMEAVEMVKNDDFDIIVMDIMMPRLDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+   ++P+I +S        L  F+ G+DD + KP   +E++ARV A+  R K 
Sbjct: 62  SACKEIQKIKKIPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARVRAVLNRAKA 121

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S N     +   + +    R+ ++ GE   +  +E  +L YL+ N    +++ ++   ++
Sbjct: 122 SGNTEDIIKYQGLEINFTAREVKIDGEKVSMTPKEYDLLFYLVRNMNIALSREKLLEEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G FD   ++  +++HI  LR  L      + + + R +GY  +
Sbjct: 182 G-FDFYGDDRTIDTHIKMLRNSLGPY--RNLIVTLRGMGYKFE 221


>gi|299537509|ref|ZP_07050803.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
 gi|298727070|gb|EFI67651.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
          Length = 224

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++        DG +       +    +  SA  D+  ++  +        
Sbjct: 4   ILVADDDANIRELVCLFLRKDGFTTMEAGDGKEALAIYGSAPIDLVVLDIMMPT--MDGW 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R  ++ +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R +
Sbjct: 62  TLCKELRKMNTDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYR 121

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   + G + +           +V  LP +E  +L  L    G+   + Q+   I+G
Sbjct: 122 IGHSQTIQLGQVTLDRQTYKVMRGKDVISLPLKEFELLYKLAETPGQVYTREQLIDQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A +   ++ HI +LR++      F  +D+ R LGY ++ 
Sbjct: 182 I-DYAGDNRTIDVHIKRLRERFNTITDF-HIDTIRGLGYRLEV 222


>gi|291302971|ref|YP_003514249.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572191|gb|ADD45156.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 234

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A    +G  +E            ++   D+  ++  L   G   L
Sbjct: 13  ILVVEDEPTIAASVAARLRSEGHRVEIAADGPAAVAADAAFLPDLIVLDVMLP--GFDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R ++A   VP++ ++        L     G DD + KP   RE+ ARV+A+ RR+  
Sbjct: 71  EVCRRVQARRPVPVLILTARDDETDMLVGLGVGADDYLTKPFSMRELTARVSALLRRVDR 130

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +      G +RV    R      E   L   E  +L YL  +    +++ Q+ +
Sbjct: 131 LSAPPPAEPVLRFGDLRVDRAARLVHRGDEEVHLTATEFDLLVYLTEHPQAVLSREQLLA 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++   D       V+SH+  LR+KL    G + + +   +GY
Sbjct: 191 QVWKWAD-GGGTRTVDSHVKALRRKL----GAEVIRTVHGVGY 228


>gi|187777129|ref|ZP_02993602.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC
           15579]
 gi|187774057|gb|EDU37859.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC
           15579]
          Length = 231

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +       +DG  +  F +    + L     E +  +   ++  G   L+
Sbjct: 5   LIVDDEAEIIELMEIYLLNDGYKV--FKATNGLDALNIINEEKIHLVILDIMMPGIDGLQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR    +P+I +S        +    +G DD + KP    E+LARV A  RR    
Sbjct: 63  VCMKIRKEYNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSIMELLARVKAQIRRYVYL 122

Query: 123 NN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           N            E   I +        + G    L   E +IL  L +N GK  +   I
Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGTELKLTPTEYKILLLLASNGGKVFSAEDI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +  I+         N V +HI +LR+KL +       V++   +GY I+
Sbjct: 183 YKEIWTEKYFEGN-NTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230


>gi|169634809|ref|YP_001708545.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           SDF]
 gi|169153601|emb|CAP02784.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii]
          Length = 236

 Score =  227 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  L G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     +++P++ ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLAEIPVLMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKTIDANGLILDPVSQRVSFGNSILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWGG-NVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227


>gi|260219796|emb|CBA26687.1| Transcriptional regulatory protein qseB [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 222

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D +++ DG  A     G  ++        E    +     + ++  L   G+  +
Sbjct: 3   ILLAEDDSMLGDGLRAGLRQMGFQVDWVRDGVAAERELRAVDYVAAVLDLGLP--GKDGM 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +RA  +  P++ ++   ++   +   D+G DD V KP+   E+ AR+ ++ RR  
Sbjct: 61  EVLQALRAARNTTPVLVLTARDAVPDRIRGLDAGADDYVLKPVDLHELAARLRSLVRRSH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+ +  + G + +    R      E  PL  RE  +L  LM + G+ +++ Q+   +Y 
Sbjct: 121 GVAQDMLQAGALSLDPSARQVTWMDEAVPLSTREFDLLHTLMRSAGRVLSREQLEQQMY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   VE N +E HI  LR+KL+     D + + R +GY ++
Sbjct: 180 SWGLEVESNTIEVHIHHLRRKLQA----DVIQTVRGVGYMLN 217


>gi|256833046|ref|YP_003161773.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686577|gb|ACV09470.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 227

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G   E     +         + D+  ++  L   G+    
Sbjct: 6   LVVDDDTALSEMIGIVLKAEGFDAEFCADGDSALQTFHDTQPDLVLLDLMLP--GKDGTV 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IR  S VP+I ++        +   ++G DD V+KP   +E++AR+    RR+ + 
Sbjct: 64  VCREIRRESGVPIIMLTAKSDTVDVVAGLEAGADDYVSKPFKPKELVARIRTRLRRVEEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +   G      G+V  L   E  +L  L     + +++  +   ++G +
Sbjct: 124 EPEILRIGDLDIDVTGHKVTRDGQVISLTPLEFDLLVALARKPWQVLSREVLLEKVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEHDPESPEIVLTVRGVGYK 221


>gi|254496524|ref|ZP_05109395.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
 gi|254354263|gb|EET12927.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
          Length = 222

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 9/222 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D  L+ D         G  ++     E       S   ++  ++  L       L L
Sbjct: 2   LVEDDELLGDAVKTGLTQFGYIVDWLKDGEAARAALKSESFELIILDLGLP--KLSGLAL 59

Query: 64  PRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
            + IR   +  P+I ++   S++  +   DSG DD + KP    E+ AR+ A+ RR +  
Sbjct: 60  LQNIRHDGNSTPVIILTARESVEDRIKGLDSGADDYLVKPFDLNELSARIRALVRRSQGR 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +++  +   I +        V   +  +PRRE  +L+ L+ N G+ +++ Q+  +IYG +
Sbjct: 120 ADSVLQYKNITLDPAAHSVLVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG-W 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +E V+ N +E HI  LRKKL      + + + R +GY  + N
Sbjct: 179 EEDVDSNALEVHIHNLRKKLNA----NFIRTIRGVGYMAEKN 216


>gi|229817860|ref|ZP_04448142.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
           20098]
 gi|229784760|gb|EEP20874.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
           20098]
          Length = 242

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G S              +  R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWSARVAGDGASAVQAAAQLRPDLVIMDIMLPV--MDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR+  +
Sbjct: 74  ATKRIVADRPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 123 ---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        + G + +    R   + G+   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNAENEKVLDFGSLIIDPAQRTVSLNGKDVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G D + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GPDMIRTVHGVGYAFE 236


>gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 245

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 103/228 (45%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD A ++          G  +    + + EE L++  ++  D+  ++  +      
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYDV--VTAADGEEALETFRTSEPDLVVLDVMMP--KLD 66

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+
Sbjct: 67  GYGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRV 126

Query: 120 K-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S+       I++ ++ R      E   L   E  +LE L++  G+  ++++
Sbjct: 127 DKVGASGIPSSGVIHVASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSE 186

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           I   ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 187 ILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 234


>gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans]
 gi|133738246|emb|CAL61291.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Herminiimonas arsenicoxydans]
          Length = 229

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++++D   + +         G ++    +              +  ++  L  + G ++
Sbjct: 8   ILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLPDQSGLRL 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L   R  R  +++P+I ++     +  +   D+G DD V KP   RE+ AR+ A+ RR  
Sbjct: 68  LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKT 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +      G I +        +  E   +   E ++L++ +A+  +  +++Q+   ++
Sbjct: 128 PEHAQTLMTAGSISLDPISCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     +EE  V+ H+ +LRK L+       + + R +GY +
Sbjct: 188 GDH-VVIEERTVDVHVLRLRKALKEA--EHLIKTVRSVGYML 226


>gi|291615563|ref|YP_003518305.1| QseB [Pantoea ananatis LMG 20103]
 gi|291150593|gb|ADD75177.1| QseB [Pantoea ananatis LMG 20103]
 gi|327395832|dbj|BAK13254.1| transcriptional regulatory protein QseB [Pantoea ananatis AJ13355]
          Length = 223

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G S++ F S E      ++A  D   ++  L  +    L
Sbjct: 3   ILLIEDDRLIGDGIKAGLSKLGFSVDWFVSGEAGFQALTAAPWDAVVLDLSLPER--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R     VP++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILRQWRQQGHDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +       E  GE   L  RE  +LE  M N  + + ++Q+   +Y 
Sbjct: 121 GQLQPELRHGDVVLIPGNLCVERNGENIALKSRELALLELFMRNPDRVLTRSQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  V  N VE HI  LRKKL N+     + +   +GY++
Sbjct: 180 TWDTEVSSNAVEVHIHHLRKKLGNRF----IRTIHGVGYTL 216


>gi|227524667|ref|ZP_03954716.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088151|gb|EEI23463.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 228

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +    L     LQ++  E+   I   L+      +
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYDTQV--ELNGRTGLQAALDENFDVILLDLMLPELNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +  FD G DD + KP    E+LAR+ A+ RR+++
Sbjct: 62  EVARRLREKKNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N++            + +  + R      EV  L +RE  +L  LM N    +A+  + 
Sbjct: 122 ENDQQKSSKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G +D  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 TKVWG-YDSEVETNVVDVYIRYLRNKINRPGENSYIQTVRGTGYVM 226


>gi|220918203|ref|YP_002493507.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956057|gb|ACL66441.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 234

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           GV++                R DV  ++  L   G+  LE
Sbjct: 10  LLVEDDLRLAAFTREYLEGHGVAVVHATDGRRGLDEALGGRFDVVLLDLMLP--GKDGLE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----R 118
           + R +R+ S VP+I ++        +   + G DD + KP   RE+LAR+ A+ R    R
Sbjct: 68  VCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGR 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V    R   + G    L   E  +L  L    G+ +A+ Q+     
Sbjct: 128 AGPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAG 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G  +EA +   V+ H+S+LR+KL +       + + R  GY +
Sbjct: 188 GSAEEAFD-RSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229


>gi|150016917|ref|YP_001309171.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903382|gb|ABR34215.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++  G       +G        +   + +    + ++   +  L        
Sbjct: 3   ILLVEDDKIIASGLEYSLKQEGFDTMVCYDISSAKGVIEDNKFNLCLFDLSLPD--GSGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +++R     P+I ++        +   D G DD + KP   RE+++R+ ++ RR   
Sbjct: 61  ELCKLVREKDDTPVIFLTACDDEVNVVMGLDIGADDYITKPFRIRELISRIRSVIRRYGK 120

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     E   IR+ +             L   E R+L     N G+ +++ QI   I+
Sbjct: 121 DSSSKAILELNNIRINTLDAKVYKNDAEITLTALEYRLLLIFANNPGQVLSRNQILEGIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +  + V +N +  +I ++R+KL +       + + R LGY +
Sbjct: 181 DVAGDFVNDNTLTVYIKRIREKLEDDPQKPTIIKTVRGLGYKV 223


>gi|300173928|ref|YP_003773094.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888307|emb|CBL92275.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 99/230 (43%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   E   + + +E +       D++ +   ++      
Sbjct: 3   ILVVDDDIEIAELLEIYLKNEGY--EPVMASDGKEAISKLNTNPDIALMVLDVMMPNMNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ +I+R  S++P++ +S        +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  LEVVKIVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAE 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            S      +  + G + +  D  +     G++  L   E  I   L ++  +  +   IF
Sbjct: 121 NSVQDQTPDVLDIGSLVINKDSHEVKTADGDLVNLTALEFGIFYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++   +  V    V  H+S LR K+     G   + +   +GY I+ N
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEEATNGNQVIQTVWGVGYKIEVN 229


>gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 247

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 25  LVVDDEAPLSELLSMALRYEGWEVRSAGDGAGAVRTVREFRPDAVVLDIMLPD--MDGLA 82

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 83  VLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGT 142

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  R+E     G + +  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 143 AAVRSESLLAVGDLTLDEDSHEVTRGGQSIHLTATEFELLRYLMRNPRRVLSKAQILDRV 202

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 203 W-SYDFGGQANVVELYISYLRRKI-DAGRPPMIHTRRGAGYLI 243


>gi|295093683|emb|CBK82774.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 222

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     +    +G +++     +       +   D + ++  +  K    + 
Sbjct: 4   LVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDYMEAENYDGAIMDIMIPNK--DGIT 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
           + R +R A  QVP++ ++     Q  +   D+G  D + KP    E++AR+  + R +  
Sbjct: 62  VLREMRNAGIQVPVLFLTAKTETQDIVRGLDAGASDYMTKPFEFSELMARLRVMLRTQNP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+ N    G + V  + R     G+V  L  RE  ILEYL  NR   V + QI   I+ +
Sbjct: 122 VNENVITCGSLVVDMNNRQAIRDGKVIDLTVREYAILEYLARNRNVVVTREQIRVNIWNI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D+ V  NV++ +I  LR+K+ +      + + R +GY ++ 
Sbjct: 182 -DDDVNSNVIDVYIRYLRRKIDDNYEEKLIHTIRGVGYKLEC 222


>gi|229012775|ref|ZP_04169944.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228748456|gb|EEL98312.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R   +
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--ARHIGTVIRVGYKFE 224


>gi|49477414|ref|YP_036047.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328970|gb|AAT59616.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 232

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKV--FSAYNGEEALEIINNNSIQIAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHITRLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|65322038|ref|ZP_00394997.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 232

 Score =  227 bits (581), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 7   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLP--KMNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 65  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 124

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 125 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 185 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 232


>gi|310287286|ref|YP_003938544.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|311064134|ref|YP_003970859.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|313139990|ref|ZP_07802183.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|309251222|gb|ADO52970.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|310866453|gb|ADP35822.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|313132500|gb|EFR50117.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 239

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G S    +            R D+  ++  L       L
Sbjct: 14  ILVVEDEPTLATAIAQRITAEGWSARVASDGASAVQAAKQLRPDLVIMDIMLPV--MDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + I A   VP++ ++   +    +    +G DD + KP   RE++AR  A+ RR++ 
Sbjct: 72  EATKRIVADRPVPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVER 131

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               G + +    R   V GE   L   E  +L  L       + + +
Sbjct: 132 AKVIAKNSENEKILNFGSLVIDPAQRLVTVNGEQVHLTPTEFDLLVTLARKPKSVLTREK 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D +     V+SH+  LR KL    G + + +   +GY+ +
Sbjct: 192 LLEEVWDWVDASG-TRTVDSHVKALRHKL----GSETIRTVHGVGYAFE 235


>gi|186472789|ref|YP_001860131.1| two component heavy metal response transcriptional regulator
           [Burkholderia phymatum STM815]
 gi|184195121|gb|ACC73085.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phymatum STM815]
          Length = 225

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G S+E  N       L      DV  ++  L        
Sbjct: 3   ILVIEDEPKTAAYLKKGLEESGYSVEVANDGSHGLILAQEEDYDVIILDVMLPW--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +RA    P++ ++    +   +   + G DD + KP    E+LARV  + RR   
Sbjct: 61  TVVKTLRATRATPVLFLTARDDVNDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +  + R  +       L  RE  +L+ L    G+ +++TQI S ++ +
Sbjct: 121 RESELIRIGDLEMDINRRRVKRGTMRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRSKVDDNFPVKLIHTVRGVGYVLE 220


>gi|75675380|ref|YP_317801.1| two component transcriptional regulatory protein [Nitrobacter
           winogradskyi Nb-255]
 gi|74420250|gb|ABA04449.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 223

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +         D G  ++     E   +L  S   D   ++  L    G  V
Sbjct: 3   LLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEAHFLGDSEPYDAVVLDIGLPKMDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  R  R    +P++ ++        +  FD+G DD V KP H  EILAR+ A+ RR  
Sbjct: 63  LEAWR--RGGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARMRALLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+ + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAHSELTCGPVTLDTRTGRVSVGGNPVKMTSHEYRLLAYLMHHIGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++RKKL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLL 216


>gi|50122111|ref|YP_051278.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612637|emb|CAG76087.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 242

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +    +        + +   N  +  EW++  +   +  ++  L G     
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATQWLPNGNDVVEWVRQHS-PSLILLDLMLPGC--DG 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR  S VP+I ++        L   + G DD + KP   RE++ RV  + RR  
Sbjct: 70  LTLCRTIRQFSNVPIIMVTARIEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCG 129

Query: 121 VSNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N+  +        + +   G      G+   L   E R+L+ L    GK  ++  +  
Sbjct: 130 WQNDGVKAAEKSETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLD 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +Y  +   V +  ++SHI  LR+KL         + +   +GY  +
Sbjct: 190 KLYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235


>gi|317404461|gb|EFV84873.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 228

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       +    ++          L      D+  ++  L   G    
Sbjct: 3   ILVIEDEPKLADYLKKGLSEQSHVVDLARDGVNGLHLALEGAYDLIVLDVMLP--GVDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +RA+   P++ ++   +++  +   + G DD + KP    E+LARV A+ RR + 
Sbjct: 61  GILAAVRANKDTPILMLTARDAVEDRVRGLEGGADDYLIKPFAFSELLARVQALLRRGRS 120

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +    R     G    L  +E  +L  L+  +G+ +++T +   ++ +
Sbjct: 121 QEPTVFRLADLELDLARRKVARGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NV++  + +LR KL +      + + R +GY ++
Sbjct: 181 -NFDSDTNVIDVAVRRLRSKLDDPFEAKLLHTVRGMGYVLE 220


>gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +++           S E F + +  E +      +   +   ++  G K  E
Sbjct: 6   LIIEDDEDIRELTALYLKK--HSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKGYE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S+ P+I +S    ++  +   D+G DD + KP    E+ AR+ A  RR K++
Sbjct: 64  ICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSKMN 123

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            NR E       G + +  D  D   +G    L  +E ++L  L+ N+    +  +I+  
Sbjct: 124 ANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIYDQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I+G+ D   +   V  HIS LR+K+         + + R  GY  
Sbjct: 184 IWGI-DHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKF 227


>gi|260103047|ref|ZP_05753284.1| response regulator [Lactobacillus helveticus DSM 20075]
 gi|260083137|gb|EEW67257.1| response regulator [Lactobacillus helveticus DSM 20075]
 gi|328464398|gb|EGF35807.1| two-component response regulator [Lactobacillus helveticus MTCC
           5463]
          Length = 228

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  ++  E    L ++   D++ +   ++      
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTT--PDIALMILDIMMPNMSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR +
Sbjct: 61  IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 KQVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  +    V  H+S LR K++    G D + +   +GY ++
Sbjct: 181 ERVWKQ-ESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|219667787|ref|YP_002458222.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538047|gb|ACL19786.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 225

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L  +DG +              S A   ++ I+  +        
Sbjct: 4   IMIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKISEANPSLAVIDLMMPN--MDGY 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R     +P++ ++        +  F++G DD + KP    E+L RV A+ RR +
Sbjct: 62  ELCRQLRQGYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALMRRYR 121

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++   + G + +  +     + G    +P +E  +L  L    G+   + Q+   ++G
Sbjct: 122 IEASQTIQIGYVTLDKNSYSVILNGVGEDIPMKEFELLFKLGGFPGRTFTRDQLLEGVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D    E  ++ HI +LR++   +     + + R LGY ++ 
Sbjct: 182 -YDFDGNERTLDVHIGRLRERFPAEKSGFKITTVRGLGYRLEV 223


>gi|94310689|ref|YP_583899.1| two component heavy metal response transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93354541|gb|ABF08630.1| DNA-binding response regulator in two-component regulatory system
           with AgrS [Cupriavidus metallidurans CH34]
          Length = 224

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +       +    ++  ++             D+  ++  L   G    
Sbjct: 3   ILVIEDEPKTGEYLRKGLTESSFVVDLASTGRDGLHHAIDGDYDLVILDVMLP--GMNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E+ + +R H   P++ ++    ++  +   + G DD + KP    E+LAR   + RR   
Sbjct: 61  EVLKELREHKDTPVLFLTARDEVEDRVKGLELGGDDYLAKPFAFVELLARARTLLRRGPT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R E   + +          G    L  RE  +L +L    G+ +++TQI S ++ +
Sbjct: 121 REAERIEIEDLEIDLLRHRVSRGGIRIDLSPREFALLHFLARRHGEVLSRTQIASHVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR K+ +      + S R +GY ++
Sbjct: 181 -NFDSDTNVVDVAIRRLRAKMDDTYAPKLIHSVRGIGYVLE 220


>gi|330831698|ref|YP_004394650.1| beta-lactamase response regulator [Aeromonas veronii B565]
 gi|328806834|gb|AEB52033.1| Beta-lactamase response regulator [Aeromonas veronii B565]
          Length = 224

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D A + D  I     DG  +E F   +         R D   ++  L       
Sbjct: 5   VIWLVEDEASIADTLIYALQTDGFEVEWFMLGQQLLTRLEQTRPDFLILDVGLPD--ISG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + +RA + +PL+ ++        L   + G DD V KP   RE+ ARV  I RR +
Sbjct: 63  FELCKQVRALTDIPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRRSQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     + +  +      +G+   L R E  +L+ LM   G+  ++ Q+   ++  
Sbjct: 123 PVAPQPSA-LLVLDEERARIHFRGQPLALTRYEYLLLKTLMLAPGRVYSRQQLMDLVWQD 181

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +E+++   V++HI  +R KLR      + + + R LGYS++
Sbjct: 182 AEESLD-RTVDTHIKTIRAKLREHDPEANLILTHRGLGYSLE 222


>gi|323135689|ref|ZP_08070772.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322398780|gb|EFY01299.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 247

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 28/235 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +G  +E  ++ +  E   +    D+  ++  L   G   L
Sbjct: 20  ILVVEDEASLALLLTYNLEAEGYQVEHVDNGDEAELRIAETPPDLVILDWMLP--GVSGL 77

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA-------- 110
           E+ R +RA      +P+I ++        +     G DD V KP    E++A        
Sbjct: 78  EICRRLRAREACRDMPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELMARVRALLRR 137

Query: 111 ----RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
               RVA+  R           G I +  D       G    L   E R+LEY M   G+
Sbjct: 138 ARPERVASKLR----------LGDIDLDRDTHRVRRSGREIHLGPTEYRLLEYFMEKPGR 187

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + Q+  +++G+  E ++E  V+ H+ +LRK L      DP+ + R  GYS D
Sbjct: 188 VFTRAQLLDSVWGMSAE-IDERTVDVHVGRLRKALIRGREKDPIRTVRGAGYSFD 241


>gi|227550620|ref|ZP_03980669.1| response regulator [Enterococcus faecium TX1330]
 gi|257896267|ref|ZP_05675920.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|227180244|gb|EEI61216.1| response regulator [Enterococcus faecium TX1330]
 gi|257832832|gb|EEV59253.1| transcriptional regulator [Enterococcus faecium Com12]
          Length = 236

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++G   E   + + +E L       D+  +   ++      
Sbjct: 10  ILIADDDKEIVELLSIYIHNEGY--EAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR K
Sbjct: 68  MQVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 127

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       +  E   + +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 128 MQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEIF 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 188 ERVWKQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 234


>gi|167629619|ref|YP_001680118.1| transcriptional regulator [Heliobacterium modesticaldum Ice1]
 gi|167592359|gb|ABZ84107.1| transcriptional regulator [Heliobacterium modesticaldum Ice1]
          Length = 223

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +      +   +G  ++     +       ++  D+  ++  +       +
Sbjct: 3   ILLAEDDQRLGKLIDHMLRREGHDVDWVQRGDDAYHYAKASHYDLLVLDWMMPA--MDGV 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R    Q P++ ++   +++  +   D+G DD + KP    E++AR+ A+ RR K
Sbjct: 61  ILCRQLRQEGLQCPILMLTAKDAVEDRVQGLDAGADDYLVKPFASAELMARLRALSRRGK 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +       +   + +  +       G+   L  RE  +L+ L+ N+G+ + +  I   ++
Sbjct: 121 IPLQEEIVQVADLLLNRNRHSVTRGGKEITLTSREFALLDLLVQNKGQVLPRELIMERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL D  V +N ++++I  LRKK+        + + R +GY+++
Sbjct: 181 GL-DADVTDNTLDAYIRLLRKKIEPPGAAKLIHNIRGVGYTLE 222


>gi|154247445|ref|YP_001418403.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161530|gb|ABS68746.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 238

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +     F + G  ++     E    L    + DV  ++  L  +    L
Sbjct: 15  LLLVEDDRDAAEYLRKAFREAGHVVDLAADGEEGLALALDGKYDVMVVDRMLPAR--DGL 72

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L   +R      P++ +S    +   +    +G DD + KP    E+LARV A+ RR  
Sbjct: 73  SLVTELRGRGHTTPVLILSALGQVDDRVQGLRAGGDDYLPKPYAFTELLARVEALSRRGV 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +    +   + +          G+  PL  RE R+LEYL+ + G+ V +T +   ++
Sbjct: 133 SQGAETVYKVSDLELDRLAHRVTRSGKEIPLQPREFRLLEYLLRHAGQVVTRTMLLENVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY +
Sbjct: 193 D-YHFDPQTNVIDVHVSRLRSKIDKGFDVPLIHTVRGAGYMV 233


>gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family
           protein [Actinomyces oris K20]
 gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
 gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
          Length = 249

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +                  D+  ++  L        
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPD--MDGF 74

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ ++    +   +     G DD V KP    E++AR+ AI RR  
Sbjct: 75  TVARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTH 134

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              N+         + +  D  +         L   E ++L YLM N G+ V+K QI   
Sbjct: 135 AIENQDDGVVRVADLVLDEDAHEVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDH 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           ++  +D   +  +VES+IS LR+K+    G D       + ++R +GY +
Sbjct: 195 VW-EYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243


>gi|238061627|ref|ZP_04606336.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237883438|gb|EEP72266.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 232

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D        DG  +             +  R D+  ++  +   G   LE
Sbjct: 2   LVVDDDLTVSDVVRRYLEQDGCEVRLAADGADGLAAIAVHRPDLVVLDLMMP--GIDGLE 59

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR     +P+I ++        +   + G DD V KP   RE++ R+ ++ RR   
Sbjct: 60  VCRRIRRQLPDLPVIMLTALGEEADRVLGLEVGADDYVTKPFSPRELVLRIRSVLRRTAG 119

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    R     + V +  R  E+ G    L  RE  +L +LM + G+  +++ +  
Sbjct: 120 HTTSPAGLTRLVDAELAVDTARRVAELNGTPLSLTVREFDLLVFLMRHPGRAWSRSDLLD 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++G   +  +++ V  H+ +LR+K+  K      + +   +GY  D
Sbjct: 180 KVWGW--QFGDQSTVTVHVRRLREKIERKPAEPRRIRTVWGVGYRYD 224


>gi|229012380|ref|ZP_04169557.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228749016|gb|EEL98864.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++    +++ +E L      +V  I   ++       
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNV--LEAIDGKEALSIFEEHEVHLIILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYS 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I V    R   V GE   +   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 STINVSTEDTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYFMQNQGIVISREQLIT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQK--ATCIVTVVRTGYKFE 225


>gi|168182887|ref|ZP_02617551.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182673991|gb|EDT85952.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 228

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +  + + +  E ++     D+  I   L+       
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKV--YCTTKGLEGIEIFKSIDIKLIILDLMLPDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL  
Sbjct: 62  EVCRIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N+ +    + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I
Sbjct: 122 YNSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|322831204|ref|YP_004211231.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321166405|gb|ADW72104.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 220

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +  + +  ++    + L  +++  +  ++  L  K     
Sbjct: 3   LLIVEDDELLRQGLTLALTSENYACDCASTAAEAQSLIQTSQYSLVILDLGLPDK--DGA 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R  S  +P++ ++   +L+  +D  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  TLLRQWRRQSISLPVLILTARDALEDRVDGLDAGADDYLIKPFALVELQARVRALIRRYQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N+   G +++    +   +      +  +E  IL  LM   G+ V +  +   +Y 
Sbjct: 121 GQSDNQISVGNLKINLSSQQAYLNDAPVEVTPKEFAILSRLMMRAGQTVNRELLQQDLYT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+    N +E H+  LR+KL    G + + + R +GY ++
Sbjct: 181 WQDDLG-SNTLEVHVHNLRRKL----GKEVIRTVRGIGYRLE 217


>gi|229092565|ref|ZP_04223721.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228690852|gb|EEL44627.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL  K     + +   +GY  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGEK--AKHIGTVIRVGYKFE 224


>gi|218899823|ref|YP_002448234.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903185|ref|ZP_04067319.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
           4222]
 gi|228910522|ref|ZP_04074336.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
           200]
 gi|228967768|ref|ZP_04128784.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218545601|gb|ACK97995.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791922|gb|EEM39508.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228849086|gb|EEM93926.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
           200]
 gi|228856467|gb|EEN00993.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
           4222]
          Length = 229

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|307823691|ref|ZP_07653919.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307734985|gb|EFO05834.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 226

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 100/226 (44%), Gaps = 8/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + D        +G ++E   +      L S+ +     ++  L        +
Sbjct: 4   LLVEDDERIVDFVQRGLKAEGYAVEVARNGLDAIALGSAGKFQAIILDLGLPD--LNGRQ 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +   +R A    P++ ++   ++Q  +    SG DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VCERLRDAGVGTPILMLTARDTVQDKVTGLRSGADDYMTKPFAFEELLARIEALMRRRSG 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K+     +   + +  +  +      +  L  +E  +LE  M   GK +++T+I   +
Sbjct: 122 EIKLETKELQVADLLLNGETHEVRRGETLIELTPKEFALLECFMRMPGKVLSRTRILEQV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +      NVV+ +I +LR+K+ +      + + R  GY +D +
Sbjct: 182 WG-YSADPLTNVVDVYIRQLRRKIDDDYELKLLKTVRGFGYKLDVS 226


>gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 243

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    +      D+  ++  +        
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFRQTEPDLVVLDVMMP--KLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+  
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I 
Sbjct: 126 NGASGIPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|238896533|ref|YP_002921273.1| DNA-binding transcriptional regulator QseB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330008924|ref|ZP_08306330.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
 gi|238548855|dbj|BAH65206.1| putative 2-component transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328535024|gb|EGF61548.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
          Length = 219

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F +    +    SA  D + ++  L   G   L
Sbjct: 3   ILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLP--GIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R      P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + +  +     + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDDEVSSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +    +   EE L++  RE    I   ++       
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQVH--QATNGEEALEAFHRESPDLIVLDVMLPKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 64  AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 122 SNNRAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           S    ET            G + V ++ R     GE   L   E  +LE L    GK V 
Sbjct: 124 SITVTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|120610179|ref|YP_969857.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120588643|gb|ABM32083.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 232

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            ++++D   + D  +      G   E            +     D++ ++  L   G   
Sbjct: 8   ILVVEDEPDIADVVLDYLRHSGFEAEHLAEGPAALARLTGPTPPDLTLLDIMLP--GVDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R  R H+  P+I ++        L   + G DD + KP   RE++ARV  + RR  
Sbjct: 66  LEVLRQARRHTDRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVLRRST 125

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +  A+  P+ +        ++G    L  RE R+L+ L ++ G+  ++ Q+    Y 
Sbjct: 126 AHPSPAAQDAPLVLDEAFWQVHLRGTPVSLTPREFRLLQALASHSGRIFSRAQLLDMAYD 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
                V E  ++SHI  LR+KLR   G D   + S   +G+S++
Sbjct: 186 DT-LDVNERAIDSHIKNLRRKLRAADGSDHEWIRSVYGVGFSLE 228


>gi|197118229|ref|YP_002138656.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197087589|gb|ACH38860.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 226

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G                     D+  ++  L   G    
Sbjct: 4   ILIIEDERDLAELLAFNLEREGYKTIIAADGIEGLANAGHCHPDLIILDLMLP--GMLGT 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + ++     + +P+I ++        +  F+ G DD V KP   RE+  RV A+ RR
Sbjct: 62  EVCKNLKKSERTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELNLRVKAVLRR 121

Query: 119 LK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+   E GPI + +D     V GE       E ++L  L    G+  ++  +  
Sbjct: 122 SNTETVSSTMIELGPITIDTDRHQVMVNGEEIFFTSTEFKLLHVLAQRLGRVQSRDVLLR 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G ++   +   V++HI++LR K+      D + + R  GY ++ 
Sbjct: 182 DVWG-YNFVDDSRTVDTHITRLRTKMGAAG--DLIKTVRGFGYKLEV 225


>gi|110833486|ref|YP_692345.1| two-component response regulatory protein [Alcanivorax borkumensis
           SK2]
 gi|110646597|emb|CAL16073.1| Probable two-component response regulatory protein [Alcanivorax
           borkumensis SK2]
          Length = 227

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +               +  +S +    +          ++  L       +
Sbjct: 4   ILIVEDEPRLSQLVADYLHHAHFQTKQTDSAKAAMAMAHEQSFQAIILDLMLPD--GDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR HS VP+I ++        L   + G DD + KP   RE++ARV A+ RR   
Sbjct: 62  EVCKTIRQHSNVPIIMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLRRANP 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   E   +++  +  +  ++     +   L   E  +L  L    G+  ++ Q+   I
Sbjct: 122 ESPEQE-HSLQLDEERYEAILKQPQGQQRIGLTAIEFALLSTLSRQPGRIWSRDQLMDEI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221
           Y      V +  ++SHI KLR+KL   ++   D + S   +GY ++
Sbjct: 181 YNDH-RVVSDRTIDSHIRKLRRKLSDGDEQSHDWIGSVYGVGYRLE 225


>gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 231

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G   E   +      L    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKLIREIKFDLILLDLMLPE--IDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A+ RR 
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   N  + G + V    R+     +   L  +E  +L+ L+ N+G  + +  +   I
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|319942120|ref|ZP_08016438.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804330|gb|EFW01214.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis
           3_1_45B]
          Length = 218

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +A    +G +++            ++    +  ++  L   G+  L
Sbjct: 3   ILLVEDDDMIGESVMAGLETEGHAIDWVRDGNSALLALNTTPYSLVILDLGLP--GKDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + +R      P++  +   ++   +   DSG DD + KP    E+ AR+ A+ RR  
Sbjct: 61  QVLKEMRGRRDPTPVLVTTARDTVDDRIKGLDSGADDYLIKPYDLDELSARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   E G +++    R+   +GE   L  +E  +L  L   +G   ++ Q+   +Y 
Sbjct: 121 GRADPVIERGELKISPATREVTYKGEPVILSSKEYALLAALAERKGVVWSRAQLEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D  V  N +E HI  LRKKL +      + + R +GY ++
Sbjct: 181 -WDNTVGSNAIEVHIHHLRKKLADSA----IKTVRGVGYMLE 217


>gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 230

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G +   + +   +E L+   +E +  +   ++       
Sbjct: 4   ILIVDDDKEIVELIDFYMKNNGYN--TYKAFNGKEALEIFQKEQIDIVILDIMMPDLDGK 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S  P+I +S        +D    G DD + KP +  E++ARV A+ RR  +
Sbjct: 62  EVLRKIREKSSTPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALLRRSTI 121

Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            NN  E   + +         +            L   E +++ + M NR K   K Q++
Sbjct: 122 FNNTKEESNLTIINKHLKLDEESCKVYKDDVEIQLTSFEYKLICFFMKNRNKVFTKGQLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G      +E ++  +ISKLR+K+ +     + + + R LGY  
Sbjct: 182 EEVWGQC-YLGDEKIIMVYISKLREKIEDNPKEPNFIKTIRGLGYIF 227


>gi|262202521|ref|YP_003273729.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262204066|ref|YP_003275274.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085868|gb|ACY21836.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087413|gb|ACY23381.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 244

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G ++      +       +A   V  ++  L       +E
Sbjct: 13  LVIEDEPDIAEVVADYLQRSGFTVTVAPDGQEGVAAARTASPAVVILDLGLPS--LDGVE 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  +   ++ ++       T+     G DD + KP   RE++AR+ A+ RR + +
Sbjct: 71  VCRQLRTFTNAYIVMVTARADEVDTVVGLSVGADDYLTKPFRPRELMARIDAMLRRPRPT 130

Query: 123 ----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++    G + +   GR+ +V+     L R E  +LE L    G   ++ Q+ + I+
Sbjct: 131 PTGESHPRTIGELTLDPQGREVQVESTPVELTRTEFDVLEALTRRPGVVFSREQLLTEIW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G  D   + +VVE H++ LR+KL +  +    + + R +GY +
Sbjct: 191 GP-DWVGDAHVVEVHVASLRRKLGDSAVAGRFIRTVRGVGYRM 232


>gi|204930785|ref|ZP_03221658.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320244|gb|EDZ05448.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 226

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFENKLIMTVRGMGYRL 218


>gi|84494699|ref|ZP_00993818.1| TcrA [Janibacter sp. HTCC2649]
 gi|84384192|gb|EAQ00072.1| TcrA [Janibacter sp. HTCC2649]
          Length = 231

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 95/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +        +G  ++  +     +WL +    DV  ++  L   G    +
Sbjct: 4   LLVEDEKALAETIRRGLTAEGFVVDVAHDGVTGQWLATENPYDVIVLDIMLP--GRNGYD 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P + ++         D F+ G DD + KP     ++AR+ A+ RR   
Sbjct: 62  VLRNLRALKVWAPAMMLTAKDGEYDQTDAFELGADDYLTKPFSFVVLVARLRALVRRGAP 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +       G + +  + R     G    L  +E  +L++LM +    ++K +I   ++  
Sbjct: 122 ARPVDLRVGGLLLDPNKRTVSRNGHAITLTAKEFSVLQFLMRHPEVVLSKAEILDNVWDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +N+VE ++  LR+K+    G   +++ R +GY +
Sbjct: 182 A-FDGSDNIVEVYVGYLRRKIDQAFGVTSLETVRGMGYRL 220


>gi|83954225|ref|ZP_00962945.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83841262|gb|EAP80432.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 224

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 105/223 (47%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  +  +       ++G +++     +      S+   D+  ++  L   G   +
Sbjct: 4   ILVVEDDKMTGNYVAEGLREEGHTVDLMTDGKDALLQASTTSYDILIVDRMLP--GLDGV 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R   +Q P++ ++    +   ++  ++G DD + KP    E+ ARVAA+ RR +
Sbjct: 62  SVVKTMRGTKNQTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPR 121

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +      G + +    R     G+   L  RE  +LE+L+  +G+   +T +  A++
Sbjct: 122 GTQDEIVLRAGDLEMDLVRRKVTRAGQPIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     + NVVE+HIS+LR K+      + + + R  GY I+
Sbjct: 182 DIS-FDPQTNVVETHISRLRAKVDKPYEVELIKTVRGAGYRIE 223


>gi|205373785|ref|ZP_03226587.1| two-component response regulator [Bacillus coahuilensis m4-4]
          Length = 239

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 86/233 (36%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   ++  +       L      D   ++  +  K    +
Sbjct: 7   ILVVDDEDRIRRLLRMYLERENYLIDEASDGNEALELALENSYDCILLDIMMPEK--DGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I ++        +  F+ G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCQAIREKKATPVIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRTST 124

Query: 122 SNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            ++                + +  D            L  +E  +L +L  +  K   + 
Sbjct: 125 QSSYIPAEATSKDLLVFPHLTIDHDAHKVLADDMEVNLTPKEYELLHFLAKSPEKVFDRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222
           Q+   ++  ++   +   V++H+ +LR+KL          + +   +GY  + 
Sbjct: 185 QLLKEVW-HYEFFGDLRTVDTHVKRLREKLNKVSEQSAKMIVTVWGVGYKFEV 236


>gi|194014661|ref|ZP_03053278.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194013687|gb|EDW23252.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 235

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   + +    +   +G+  +   ++        +  + D+  ++  L     +  
Sbjct: 9   LIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFNQEQPDLVILDIMLPD--GEGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR  S VP+I +S        +     G DD + KP   +E+  RV A  RR   
Sbjct: 67  DICKQIRDVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSSY 126

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +    + GP  +     +    G    L  +E  ++ Y + +  + ++K  ++  
Sbjct: 127 LQPSQAEPVIKKGPFELNEQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQT 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G  D    +N V  HI +LR+K+ N     + + + + LGY  
Sbjct: 187 VWGE-DFFGSDNTVMVHIRRLREKIENSPSTPEFLVTVKGLGYKF 230


>gi|251798934|ref|YP_003013665.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546560|gb|ACT03579.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 97/229 (42%), Gaps = 15/229 (6%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +++DD   +          +G ++E            ++ + DV  ++  +     
Sbjct: 1   MIKVLVVDDEVSISSAIAYALQREGFTVETAGDGMEALEKVAAFKPDVMVLDVMMP--KM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R + A ++  ++ ++    +   +   + G DD + KP   RE++ARV A++RR
Sbjct: 59  NGYEVCRKLEAGNKPAIMLLTVKNDIVDKVLGLELGADDYMTKPFDIREVVARVKALHRR 118

Query: 119 LKVSN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            ++ +         R E G I +    R   V GE+  L  +E  +L  L  +  +  ++
Sbjct: 119 RQIESPEQDSDKEGRLELGGIVIELLSRTVRVDGEICDLTPKEFDLLALLAKHPDRVYSR 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             +   ++ + D A     V+ H+ +LRKKL    G   + +   +GY 
Sbjct: 179 EALLEQVWEM-DFAGGTRTVDIHVQRLRKKLGEWQG--LIQTVYGIGYK 224


>gi|328958774|ref|YP_004376160.1| regulatory protein VanR [Carnobacterium sp. 17-4]
 gi|328675098|gb|AEB31144.1| regulatory protein VanR [Carnobacterium sp. 17-4]
          Length = 229

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G  +E  +N  E    +++    D+  ++  +       
Sbjct: 3   ILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPN--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ + +R   Q+P++ +S   +    +    +G DD V KP +  E++AR+ ++ RR  
Sbjct: 61  NQVVKEVRKEMQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRSN 120

Query: 121 -----VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+ E GP+ +  +  +   + GE   L   E  IL  L ++  +  +  +IF
Sbjct: 121 YMTNSQEQNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++   +  V    V  H+S LR K+     G   + +   +GY I
Sbjct: 181 ERVWQQ-ESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226


>gi|320531513|ref|ZP_08032466.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136270|gb|EFW28265.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 219

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +     +      L      D+  ++  L        
Sbjct: 4   ILIVEDEPRIVAFLTKGLKAAGFTTHTTAAGRQAVALAVQESFDLIILDVGLPD--IDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ + +R     VP+I ++   S+   +   + G DD + KP    E+LAR+    R   
Sbjct: 62  EVLQQLRGQGVGVPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDT 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R     + +    R   ++G    L  RE  + E  M + G+ +++ Q+ S+++
Sbjct: 122 TGPDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSSVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GL D     NVVE ++S LR KL    G   V++ R +GY +
Sbjct: 182 GL-DFDPGSNVVEVYVSYLRNKL----GRQRVETVRGMGYRL 218


>gi|294792553|ref|ZP_06757700.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27]
 gi|294794344|ref|ZP_06759480.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44]
 gi|313894218|ref|ZP_07827783.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412]
 gi|294454674|gb|EFG23047.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44]
 gi|294456452|gb|EFG24815.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27]
 gi|313441042|gb|EFR59469.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412]
          Length = 224

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIA-LFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L++D  ++ +G  A     + ++++  FN  +  +++ +S+  DV  ++  +      
Sbjct: 3   ILLVEDEEML-NGITAKYLRAENMTVDTCFNGQQAIDYVNTSS-YDVIVMDIMMPI--LD 58

Query: 60  VLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +     +R      P++ ++   SLQ  +   ++G DD + KP    E+ AR+ A+ RR
Sbjct: 59  GISALAQMRNDGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARR 118

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + N    GP+ +    R  +  GE   L  +E  +L YL +N    +++ QI   +
Sbjct: 119 NARHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+++ +I  LRKK+        + + R +GY +
Sbjct: 179 W-EYDYESYSNLIDVYIKDLRKKIDTDENVKLIQTVRGVGYVL 220


>gi|153941052|ref|YP_001391293.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936948|gb|ABS42446.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319325|gb|ADF99702.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 221

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLP--KIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV A+ RR   
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNAGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +  V+++HI  LR+KL      D + + R +GY I+
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIE 220


>gi|146297039|ref|YP_001180810.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410615|gb|ABP67619.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 232

 Score =  227 bits (580), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +   F +      L       +  +   ++   +   
Sbjct: 4   ILIVDDEPHIVELIKFNLQKEGYN--TFEAENGNTALDIIKNNKIDLVILDIMMSDKDGY 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR       +P+I +S        +   + G DD + KP   +E++ARV A++RR
Sbjct: 62  EVLKEIRFNKGTRNLPVILLSAKSEEIDRILGLELGADDYITKPFSVKELVARVKALFRR 121

Query: 119 LK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++        +   G I V    R  + + +   L  +E  +L+ L+ NRG+ + +  I 
Sbjct: 122 IENLKPEVEEKIRFGDIEVDFTKRSVKKRNQEISLSFKEFELLKLLIENRGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  
Sbjct: 182 QRVWG-YEFDGDSRTVDVHIRFLRRKLEDDEKNPKYIETVRGVGYRF 227


>gi|255319358|ref|ZP_05360575.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262379800|ref|ZP_06072956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255303751|gb|EET82951.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262299257|gb|EEY87170.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 223

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 96/223 (43%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G      +       L      D+  ++  L        
Sbjct: 3   ILIIEDEQKIARYLAKGLTESGYRTWLAHDGREGLMLFEQHAIDLVILDVMLPE--LNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S+VP++ ++   S+   +   + G DD + KP  + E+LARV  + RR   
Sbjct: 61  QVIQTLRQFSEVPVLFLTARDSVLDRVKGLELGADDYLVKPFSYIELLARVKTLLRRSSA 120

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + +   +++            +  L  +E  +L +L  ++G+ + +TQI S ++ +
Sbjct: 121 KVVEQLQVENLKIDLLEHKVYRDRNLIELTNKEYALLRFLAEHQGEIMTRTQIASQVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +   + NVV+  + +LR K+ +      + + R +GY +D N
Sbjct: 181 -NFDTDTNVVDVAVRRLRAKIDDAYQPKLIHTIRGMGYKLDTN 222


>gi|270308315|ref|YP_003330373.1| two-component system, OmpR family, response regulator
           [Dehalococcoides sp. VS]
 gi|270154207|gb|ACZ62045.1| two-component system, OmpR family, response regulator
           [Dehalococcoides sp. VS]
          Length = 227

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +   A    +G  +      +           D+  ++  L        
Sbjct: 5   ILIADDEKRIAEILQAYLEREGFMVVVTYDGKTALAKFHEENPDLIILDLMLPE--ISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S+VP+I ++    L   L   + G DD + KP   +E++ARV A  RR + 
Sbjct: 63  DVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARVKAQLRRSEY 122

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   ++      + +    R  ++ G+   L   E  IL  L A+ G+  ++ QI   + 
Sbjct: 123 TPSLDSVLIIDQLEIDKARRLVKIGGKAVDLTATEFDILINLAASPGRVFSRMQILDKL- 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                   E  ++SHI  LRKK+  +      + +   +GY +
Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTIHGVGYKM 223


>gi|254361254|ref|ZP_04977397.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           PHL213]
 gi|153092750|gb|EDN73793.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           PHL213]
          Length = 228

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 98/227 (43%), Gaps = 17/227 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            ++++D   +++               +  +E E++  +      + ++  ++  +   G
Sbjct: 5   ILIVEDERAIREMLSLYLSKQ------YQVIEAEDYQSAINKLGEKPELILLDWMMP--G 56

Query: 58  EKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              + L + ++   +   +P+I ++   S +  +   ++G DD + KP   + +LAR+ A
Sbjct: 57  RSGIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEA 116

Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++RR     +N      + +    +   V  +   L   E ++L +LM +  K   + Q+
Sbjct: 117 VWRRSYDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLLHFLMTHPEKVYRREQL 176

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G  D  VE+  V+S+I +LRK L        + + R  GY  
Sbjct: 177 LDFIWGN-DIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGSGYRF 222


>gi|329121388|ref|ZP_08250013.1| phosphate regulon response regulator [Dialister micraerophilus DSM
           19965]
 gi|327469678|gb|EGF15145.1| phosphate regulon response regulator [Dialister micraerophilus DSM
           19965]
          Length = 234

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 104/231 (45%), Gaps = 15/231 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +   ++D + +++  +         ++GF   E       +   D+  ++  L   GE  
Sbjct: 3   LIYCVEDDSGIRELVMYALKGQKFDVKGFAGAEKFYKELENKIPDLILLDIMLP--GEDG 60

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L + + +R    +S +P++ ++   S    +   DSG DD + KP    E+++RV ++ R
Sbjct: 61  LCVLKKLRNTNEYSTIPIVMMTAKTSEYDIVKGLDSGADDYITKPFGIMELISRVKSLLR 120

Query: 118 RLKVSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R     N         +     +          G+   L  +E ++L+YL+ N+G  +++
Sbjct: 121 RSNYGKNTSKEEPKILKYKNTIIDEAKHVVTENGKEVFLTLKEFKLLQYLVINKGIVLSR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +I  A++    E +E   V+ HI  LRKK+++      +++ R +GY ++
Sbjct: 181 DRIMEAVWDSPIE-IESRTVDMHIKGLRKKIKD--CDKYINTVRGIGYRLE 228


>gi|218899996|ref|YP_002448407.1| regulatory protein VanR [Bacillus cereus G9842]
 gi|218544954|gb|ACK97348.1| regulatory protein VanR [Bacillus cereus G9842]
          Length = 233

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 98/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +    + + EE L+   + DV  I   ++      +
Sbjct: 6   ILIVDDEKEIRKLITIYLKNEGYEV--LQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 64  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N  E G ++V    R   +  E   L  RE  +LE L+ N+G  +   QI+
Sbjct: 124 MSGTSVQDENEIEIGDMKVNIVTRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 184 ERVW-KEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 232


>gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 223

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIVEDDTNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPE--MDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    RA  +  P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ + G    V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVAGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKK+    G D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKI----GNDLIETVRGLGYRM 216


>gi|325291012|ref|YP_004267193.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966413|gb|ADY57192.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 246

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 91/235 (38%), Gaps = 24/235 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-----SSAREDVSAIEAFLIGK 56
            ++++D   + +        D + + GF      + L           D+  I+  L   
Sbjct: 18  ILIVEDDPSIAE-----LQKDYLEVAGFAVKICADGLAGFQEIQKESYDLLIIDIMLP-- 70

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   LE+ R +     +P++ +S        +  F  G DD + KP    E++ARV A  
Sbjct: 71  GLDGLEILRRMNEEKDIPVLLVSAKKEEIDKIKGFSLGADDYITKPFSPGELVARVKAHL 130

Query: 117 RRLKVSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
              +   NR               +R+    R   V G+   L ++E  +L +L  +   
Sbjct: 131 ENYERLKNRFKEGPPPVKAISIRGLRIEKGARRVYVHGQEVNLAQKEFDLLLFLSEHPNH 190

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              + +IF  ++GL D   +   V  HI+++R+K+  +      V++    GY  
Sbjct: 191 VFGREEIFERVWGL-DSLGDSTTVTVHIARIREKIESDPSSPQYVETVWGAGYRF 244


>gi|296113942|ref|YP_003627880.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis RH4]
 gi|295921636|gb|ADG61987.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis RH4]
          Length = 256

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            +      +         + D+  ++  +   GE  +
Sbjct: 31  ILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMP-HGESGI 89

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  R ++ +     +P+I ++        +   D+GVDD + KP   RE+++RV A+ RR
Sbjct: 90  DFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAVLRR 149

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +       + G + + +  +     G    +   E R+L + + +  +   + QI  A
Sbjct: 150 TGIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSERAYTRAQILDA 209

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  ++E  ++ HI +LRK L        + + R  GY  
Sbjct: 210 VWGG-NVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGYRF 252


>gi|227893254|ref|ZP_04011059.1| response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227864937|gb|EEJ72358.1| response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 240

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 106/235 (45%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEK 59
            ++++D   V +     F  +G   +   + +E  +  + +A + D+  ++  L  K   
Sbjct: 5   ILMVEDDTSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKK--D 62

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR
Sbjct: 63  GIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPLALIARIKALHRR 122

Query: 119 LKVSNNR-----------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGK 166
           + +                ET  +++  + R+     +    L  +E  +L  +     +
Sbjct: 123 IMMKEEIAPKTEAKQDYDIETNHLKISKNRREVMFDDQPVTDLTPKEFDLLYTMAQKPKQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 183 VFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAQVIQTVWGVGYKFD 235


>gi|197123400|ref|YP_002135351.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173249|gb|ACG74222.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 234

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           GV++   +            R DV  ++  L   G+  LE
Sbjct: 10  LLVEDDLRLAAFTREYLEGHGVAVVHASDGRRGLDEALGGRFDVVLLDLMLP--GKDGLE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----R 118
           + R +R+ S VP+I ++        +   + G DD + KP   RE+LAR+ A+ R    R
Sbjct: 68  VCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGR 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V    R   + G    L   E  +L  L    G+ +A+ Q+     
Sbjct: 128 AGPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAG 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G  +EA +   V+ H+S+LR+KL +       + + R  GY +
Sbjct: 188 GSAEEAFD-RSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229


>gi|168182895|ref|ZP_02617559.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237794337|ref|YP_002861889.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673952|gb|EDT85913.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263491|gb|ACQ54524.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 233

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +G  +      E    L       +  ++  L        
Sbjct: 7   ILVVDDEVRILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLP--KLSGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   IR  S VP+I ++     +  L+    G DD + KP   RE++ARV A+ RR   
Sbjct: 65  EVCSKIRESSNVPIIMLTAKVEEEEKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G + V         +G++  +   E ++L  L+ N G+   + Q+  
Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKKGKMVTITPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +G +D       V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 248

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +    +   EE L++  RE    I   ++       
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQVH--QATNGEEALEAFHRESPDLIVLDVMLPKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 64  AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 122 SNNRAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           S    ET            G + V ++ R     GE   L   E  +LE L    GK V 
Sbjct: 124 SITVTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|304439740|ref|ZP_07399638.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371727|gb|EFM25335.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 225

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 105/224 (46%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G ++    +++  + ++ +  +D   I   ++       
Sbjct: 4   ILVVDDEEKIREVIKTYAEFEGHTV--VEAVDGIDAVEKAREQDFDVIVMDIMMPRLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+    +P++ +S        L  F+ G+DD V KP   +E++AR+  I  R K 
Sbjct: 62  SAYKEIKKTKNIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVTRNKK 121

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N+    E   +++  DGR   V GE   L  +E  +L YL  N+   +++ Q+ + ++G
Sbjct: 122 LNDNRVMEFEGLKIDLDGRSVSVDGERVDLTPKEYELLTYLAKNKNIALSREQLLNQVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   ++  V++HI  LR  +++      + + R +GY  + +
Sbjct: 182 -YDFYGDDRTVDTHIKMLRNSIKHY--RKFIVTVRGVGYKFEED 222


>gi|238018371|ref|ZP_04598797.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748]
 gi|237864842|gb|EEP66132.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748]
          Length = 224

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIA-LFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L++D  ++ +G  A     + ++++  FN  +  +++ +S+  DV  ++  +      
Sbjct: 3   ILLVEDEEML-NGITAKYLRAENMTVDTCFNGQQAIDYVNTSS-YDVIVMDIMMPV--LD 58

Query: 60  VLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +     +R      P++ ++   SLQ  +   ++G DD + KP    E+ AR+ A+ RR
Sbjct: 59  GISALAQMRNDGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARR 118

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + N    GP+ +    R  +  GE   L  +E  +L YL +N    +++ QI   +
Sbjct: 119 NARHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+++ +I  LRKK+        + + R +GY +
Sbjct: 179 W-EYDYESYSNLIDVYIKDLRKKIDTDENVKLIQTVRGVGYVL 220


>gi|187478540|ref|YP_786564.1| heavy metal sensing two-component sytem response regulator
           [Bordetella avium 197N]
 gi|115423126|emb|CAJ49657.1| heavy metal sensing two-component sytem,response regulator
           [Bordetella avium 197N]
          Length = 223

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G ++         +    SA  D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTADYLAGGLAESGYAVTVARDGRSAQHCFESALFDLVLLDVMLP--GMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IR  +  P++ +S   S+Q  +   + G DD + KP  + E+LARV ++ RR  V
Sbjct: 61  EVLRVIRRRASTPVLFLSARDSVQDRVKGLELGGDDYLIKPFSYAELLARVRSLLRRGPV 120

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G + +     +    G +  L  +E  +L  L+  +G+ + +T I S ++ L
Sbjct: 121 QCQDVLRLGDLEMVVGRFEVRRAGRLIRLTAKEFVLLRLLLERQGEVLTRTMIASHVW-L 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+  I +LR K+        + + R +GY +
Sbjct: 180 MNFDCDTNVVDVAIRRLRMKIDEPYPDRLIHTVRGMGYRL 219


>gi|49187559|ref|YP_030812.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|118479811|ref|YP_896962.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|49181486|gb|AAT56862.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|118419036|gb|ABK87455.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 233

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 8   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLP--KMNGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 66  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 126 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 186 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 233


>gi|332307268|ref|YP_004435119.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174597|gb|AEE23851.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 226

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +      L   +G S++  +      +L S    D++ I+  L        
Sbjct: 3   ILIVEDDSRLLTQLDTLLQTNGYSVDLADDGAKALFLLSEHPYDLAIIDIGLPV--MDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ +  R +S   P++ ++     Q  ++  D+G DD + KP  + E+LARV A+ RR  
Sbjct: 61  EVIQKARKNSVTCPILILTARDRWQEKVEGLDAGADDYLTKPFQNEELLARVKALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   E GPI + +      V G+   L   E ++ EYL+ N  K V+KT++   IY 
Sbjct: 121 GQANPTIELGPISLNTLSEQVSVSGQDIELTAYEYKVFEYLLLNPKKVVSKTELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  + +LRKKL  +   +P+++ R  GY I
Sbjct: 181 Q-DFDLDSNVIEVFVGRLRKKLDPEGKINPIETMRGRGYRI 220


>gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
 gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
          Length = 240

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +              ++R D+  ++  L        
Sbjct: 16  LLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPD--MDGF 73

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A    P++ ++    ++  +     G DD V KP    E++AR+ AI RR  
Sbjct: 74  TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 133

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S         G + +  D  +    G    L   E ++L YL+ N G+ V+K QI   +
Sbjct: 134 GSEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+KL  +    + + +KR +GY +
Sbjct: 194 W-EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYIL 236


>gi|293604396|ref|ZP_06686803.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|311105155|ref|YP_003978008.1| response regulator 3 [Achromobacter xylosoxidans A8]
 gi|292817273|gb|EFF76347.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|310759844|gb|ADP15293.1| response regulator 3 [Achromobacter xylosoxidans A8]
 gi|317402710|gb|EFV83258.1| two-component system response regulatory protein [Achromobacter
           xylosoxidans C54]
          Length = 223

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +         D G +++     +      +    D+  ++  L   G   L+
Sbjct: 4   LVIEDDTTLGHALQEFLADQGYAVDWLTEGDRVLGALAGQPYDLMLLDLNLP--GMSGLD 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           + R +R   +QVP++ ++    ++  +   D+G DD V KP    E+ ARV A   RR  
Sbjct: 62  VLRQLRQDGNQVPVLILTARDGIEDRVAGLDAGADDYVTKPFELPELAARVRAFGRRRAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    E GP+   + GR+    G+   L  RE  +LE LMA  G+ V K QI +++   
Sbjct: 122 QAQPLIEVGPLVFDTVGREVRANGQRLSLSVRELSVLEMLMARVGRVVTKRQIVNSL-SA 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    EN VE ++ +LRK+L        + + R  GY +D 
Sbjct: 181 WDADFSENAVEVYVYRLRKRLEGTGAS--IQTVRGFGYMLDV 220


>gi|126348166|emb|CAJ89887.1| putative two-component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 229

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   V++G        G  +    + E    L  S R D   ++  L   G   LE
Sbjct: 5   LIIEDDRAVREGVRLALRRQGHEVAAAATGEDGLELLRSFRPDAVILDLMLP--GMPGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRAH QVP+I  +        +   ++G DD V KP+  R + AR+ A+ RR+  +
Sbjct: 63  VCRRIRAHHQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARVLDARIRAVLRRVGGA 122

Query: 123 NN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +          G + +   G     QG    L   E R+L  L A+ G+  ++ Q+  A
Sbjct: 123 PDDHGTTRPEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++   +   +  +V++ + +LR K+    G    V + R  GY  
Sbjct: 183 VW-EHNYHGDARLVDACVKRLRSKIGEPAGRPRYVHTVRGFGYRF 226


>gi|331702134|ref|YP_004399093.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129477|gb|AEB74030.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 231

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 97/225 (43%), Gaps = 4/225 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    I     +   +           +  + R ++  I    +      L
Sbjct: 5   ILLVEDEEALSSYLIPELKFEDYQVLLAKDGLEALQVYDNNRGNLDLIILDWMLPKLDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +  +P+I ++    +   +   DSG DD + KP    E+LAR+  + R    
Sbjct: 65  EVLRRIRKNDDIPVIMMTARDYVGDKVAGLDSGADDYITKPFEIEELLARIRVVLRHESH 124

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++E      + + +  R      ++  L +RE  +L  L+ + G+ + + ++  A++
Sbjct: 125 HHQQSELYTVEDLTLNTKSRQVSRGNQLIQLTQREYELLLTLIRHGGETLTRDELLDAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G+ D   + NVV+ +I  LR K+        + + R +GY +  N
Sbjct: 185 GV-DFEGQPNVVDVYIRYLRNKVDRGYSKQLIHTVRGVGYVMSGN 228


>gi|303249046|ref|ZP_07335290.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302489569|gb|EFL49510.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 223

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    I      G +++   +      L ++    V+ I+  L   G   L
Sbjct: 3   ILLVEDDEKIASFIIGGLRQSGFAVDHAANGLDGLHLAATEPYAVAVIDVMLP--GLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R      P+I +S   S++  +   ++G DD ++KP    E+LARV A+ RR  
Sbjct: 61  KVIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRRSS 120

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   R   G + +    R+         L  RE  +LEY M N GK ++KT I   ++
Sbjct: 121 SVSEPTRLTVGELSMNLLTREVHRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + N+V+  + +LR K+        + + R +GY +
Sbjct: 181 D-YHFDPQTNLVDVLVCRLRNKIDRDWDRKMLHTLRGVGYVL 221


>gi|291062157|gb|ADD73560.1| two-component heavy metal response regulator [Achromobacter sp.
           AO22]
          Length = 230

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      L  S   D+  ++  L        
Sbjct: 3   LLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVMLPDV--DGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A  QVP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  +R +   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY++D
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGYTLD 222


>gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +     + +    L    + +V  ++  L        
Sbjct: 5   ILIVEDENDIGSFMVRTLNRKGFNAIRAETGKEALRLVELEKPEVILLDIMLPD--IDGF 62

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + + R H ++ +I ++        +   + G DD + KP +  E++AR+ A+ RR  
Sbjct: 63  EICKRVSRQHPEISIIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAVIRRTN 122

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +N  E   GP+R+  + R     G V  L  RE  +L+  + N  K + + +I + ++
Sbjct: 123 KPDNSNEVVIGPLRIDYNCRQVYKNGVVLDLTPREFCLLKVFVNNLNKALTRDEILNWVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           G  D   +   V+ H+ +LR+K+ +       +++    GY
Sbjct: 183 GE-DYIGDTKTVDVHVRRLREKIEDDPSHPKYIETVWGKGY 222


>gi|293603144|ref|ZP_06685578.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818538|gb|EFF77585.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 228

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       +    ++          L      D+  ++  L   G    
Sbjct: 3   ILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGAHDLIVLDVMLP--GVDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +RA    P++ ++   +++  +   + G DD + KP    E+LARV A+ RR + 
Sbjct: 61  GILAAVRARKNTPILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGRA 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +    R  +  G    L  +E  +L  L+  +G+ +++T +   ++ +
Sbjct: 121 QEPTLLRLADLELDLASRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NV++  + +LR KL +      + + R +GY ++
Sbjct: 181 -NFDSDTNVIDVAVRRLRSKLDDPYDTKLLHTVRGMGYVLE 220


>gi|150391007|ref|YP_001321056.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950869|gb|ABR49397.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D   A   ++       ++ +    +      D   ++  L        E
Sbjct: 9   LIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPD--LSGEE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  SQVP++ ++        +   D G DD + KP   +E++ARV AI RR    
Sbjct: 67  ICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNNE 126

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +A       G ++V     +   + E+  L   E ++L   + N GK  ++ ++   +
Sbjct: 127 GLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D    +  ++ HI  LR K+  +  +  + +   +GY  
Sbjct: 187 LG-YDYVGYDRTIDVHIKNLRHKIECEY-YKYIVTVYGVGYRF 227


>gi|312193413|ref|YP_003991079.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217865|gb|ADP76468.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 237

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +    +F  +G  S+    +      L    + D+  ++  L       
Sbjct: 6   ILIVDDEEAILNMLKLVFNKEGFTSVHTCTNGTDALHLLEQKKFDLIILDIMLPD--LSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE+ R IR     PL  IS   S    L  F  G DD + KP +  E++ARV A  +R  
Sbjct: 64  LEMCRAIRKGCDAPLFFISAKSSDLDKLTGFAHGCDDYITKPFNPLEVVARVKAQLQRYL 123

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  +   + G  ++     +  V+G+  P   +  R+L +   +  +   K Q++
Sbjct: 124 SKENKEKQSEILDFGRFQLNLAAAELIVEGKPVPCSAQVYRLLAFFCKHPNQVFTKEQLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G  D+ V++N V  HI K+R+K+  +      + + R +GY +
Sbjct: 184 YQVWGE-DQLVDDNTVMVHIRKIREKIEKDPSKPQYLKTIRGIGYKL 229


>gi|187778164|ref|ZP_02994637.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC
           15579]
 gi|187775092|gb|EDU38894.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 105/224 (46%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +  + + +  E ++     D+  I   L+       
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKV--YCTTKGLEGIEIFKSIDIQLIILDLMLPDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL  
Sbjct: 62  EVCKIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSA 121

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N+ +    + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+   I
Sbjct: 122 DNSTSNLIFDDGKLSIDYDKRVVKVNGKEVSITPNEFDILYALVSNKGKVLSREQLIDKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|309775090|ref|ZP_07670103.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917204|gb|EFP62931.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 229

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD   +++    L  ++G  ++     E E+   + A+  D+  I   ++      
Sbjct: 5   ILIVDDNQEIREVVSVLLENEGYEVQ-----EAEDGEIAIAKAKDMDLIILDVMMPKMDG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +  R IR  S  P++ ++     Q     F SG DD + KP  + E++ARV A+ RR  
Sbjct: 60  FKACRQIREVSNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRRYC 119

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   ++++      + +  +    +  G+   L   E +IL  L  +  K  +  +
Sbjct: 120 IYKGKEEPLTDSHIVMHDLDISRESNQIKKNGQTVNLTEMEYQILLLLAEHPKKIFSNQE 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++ AI+         N +  HI  LRKKL  +      + +    GY  D
Sbjct: 180 LYEAIWKGPYMYSANNTIMVHIRNLRKKLDVDPQNPLYIKTVWGKGYRFD 229


>gi|223983413|ref|ZP_03633599.1| hypothetical protein HOLDEFILI_00879 [Holdemania filiformis DSM
           12042]
 gi|223964585|gb|EEF68911.1| hypothetical protein HOLDEFILI_00879 [Holdemania filiformis DSM
           12042]
          Length = 232

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   + +G       +G +++   + +  E L    + D+  ++  L        +L 
Sbjct: 7   VEDDLSLINGLSFALNKEGYAVDVARTKQEAEALWLKEKFDLVILDVSLPD--GSGYDLC 64

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121
           R IR  S VP+I ++        +   D G DD + KP      L+R+ A+ RR +    
Sbjct: 65  RQIRQTSTVPIIFLTAADEETEIIMGLDLGGDDYITKPFKLAVFLSRIHALLRRQENFSP 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++    +  IRV    R     GE+  L   E ++L  LM N  + +   QI S ++   
Sbjct: 125 ADRELASNGIRVQRLERSVYKNGELVNLTAGEYKLLCLLMENPNQVLTPEQILSKLWDCD 184

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +  V+ N +  +I +LR K+ +       + + R LGY   WN
Sbjct: 185 ENYVDANTLTVYIRRLRAKIEDDPSDPKKIVTLRRLGYK--WN 225


>gi|168184947|ref|ZP_02619611.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795402|ref|YP_002862954.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672001|gb|EDT83962.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263740|gb|ACQ54773.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 221

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++     +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIQTIISEVLKESGYLVEEATDGLMAVEMFREGNFDLIILDVMLP--KIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV A+ RR   
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMRGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYLSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +  V+++HI  LR+KL      D + + R +GY I+
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----SIDYIKTIRGVGYKIE 220


>gi|116671258|ref|YP_832191.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611367|gb|ABK04091.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 224

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG              +  S++ D+  ++  L   G   +
Sbjct: 5   ILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLP--GMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R IRA S  P++ ++        +   +SG DD V KP    E++ARV A  R   +
Sbjct: 63  EVCRQIRAESDSPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        I +   G       E   L   E  +L  L     +   +  +   ++G 
Sbjct: 123 KAPETLRIADITIDVAGHLVSRNDERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+ R+    + V + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 221


>gi|289704826|ref|ZP_06501244.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558442|gb|EFD51715.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 276

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +   ++             DV  ++  L   G   +E
Sbjct: 56  LVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLP--GLDGIE 113

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S+  ++ ++        L+    G DD + KP   RE++ARV A+ RR + +
Sbjct: 114 VCRRVRAFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTT 173

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  E     G + +     +  V G+V  L R E  +L  L     +  ++ Q+   ++
Sbjct: 174 VSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVW 233

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +E +V+ HI  LR+KL        +D+ R +GY +
Sbjct: 234 DPA-WVGDERLVDVHIKNLRRKLDADPAR-YIDTVRGVGYRM 273


>gi|242281151|ref|YP_002993280.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
 gi|242124045|gb|ACS81741.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio salexigens DSM 2638]
          Length = 230

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +         G  +    +++  + L  + +E+   I   L+  G   L
Sbjct: 6   ILVVEDHNDTIELLKYNLTSSGYEV--VTAMDGHKALDQARKENPDLILLDLMLPGIDGL 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++   A   +P+I ++        +   + GVDD + KP   RE++ RV A+ RR
Sbjct: 64  EVCRRLKQEVATQHIPVIMLTAKGEEVDRVVGLELGVDDYIVKPFSPRELVLRVKAVLRR 123

Query: 119 LKVSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     G      + V  +    E  G++  L   E ++   L+ + GK   +  +
Sbjct: 124 STEQPEPRRPGKWSREGLSVDFEAHTVECDGDLVALTATEFKLFSELLQHEGKVRTRDHL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++           V++HI +LR+KL      D +++ R +GY  
Sbjct: 184 LDTVWDTH-FEGYSRTVDTHIRRLRQKLGPY--ADYIETVRGVGYRF 227


>gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
 gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
          Length = 248

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +  +++   EE L+S  R+    I   ++       
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQV--YSATNGEEALESFHRDSPDLIVLDVMLPKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 64  AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 122 SNNRAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +    ET            G + V ++ R     GE   L   E  +LE L    GK V 
Sbjct: 124 TVTVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
          Length = 240

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +              ++R D+  ++  L        
Sbjct: 16  LLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPD--MDGF 73

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A    P++ ++    ++  +     G DD V KP    E++AR+ AI RR  
Sbjct: 74  TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 133

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S         G + +  D  +    G    L   E ++L YL+ N G+ V+K QI   +
Sbjct: 134 GSEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+KL  +    + + +KR +GY +
Sbjct: 194 W-EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYIL 236


>gi|284029920|ref|YP_003379851.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283809213|gb|ADB31052.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 244

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 99/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V++   A     G  +    +        ++   D+  ++  L        
Sbjct: 18  LLVVDDEATVRELLAATLRFAGFQVTSAATATEAVAAATAEPPDLVLLDVMLPD--LDGF 75

Query: 62  ELPRIIRAH------SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           E+ R +R          VP++ ++        +     G DD V KP    E++AR+ AI
Sbjct: 76  EVVRRLRERRVGNNSGPVPVLFLTARDGQADKVTGLSLGADDYVTKPFDLEELIARIRAI 135

Query: 116 YRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR      +    GP+ + + G     +G+   +   E R+L YLM N G+ V+K QI 
Sbjct: 136 LRRTAGHHTDVLTVGPLTLDAQGHQVTREGQPVKVSPTEFRLLRYLMENAGRVVSKAQIL 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +D   + ++V+++IS LR+K+ +      + +   +GY I
Sbjct: 196 DRVW-QYDFGGDMSIVDTYISYLRRKV-DAGEPKLIHTVHGVGYVI 239


>gi|227502288|ref|ZP_03932337.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|227076978|gb|EEI14941.1| response regulator [Corynebacterium accolens ATCC 49725]
          Length = 268

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPE--LDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 265


>gi|49478722|ref|YP_038715.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140835|ref|YP_085995.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|49330278|gb|AAT60924.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974304|gb|AAU15854.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 233

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 8   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLP--KMNGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 66  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 126 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 186 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 233


>gi|170755155|ref|YP_001781532.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120367|gb|ACA44203.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 221

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRWNFDLIILDVMLP--KIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV A+ RR   
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNAGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +  V+++HI  LR+KL      D + + R +GY I+
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIE 220


>gi|159036071|ref|YP_001535324.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914906|gb|ABV96333.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 227

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L        E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRTGADIVLLDLMLPE--MSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRQRSYVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSTE 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +        GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 123 AAEPGAPTLAAGPVRMDIERHVVTVNGGPVQLPLKEFELLELLLRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR KL         + + R LGY  +
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKLEPEPSAPRYIVTVRGLGYKFE 226


>gi|133757364|ref|YP_001096244.1| hypothetical protein pLEW279b_p02 [Corynebacterium sp. L2-79-05]
 gi|296119388|ref|ZP_06837951.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
           DSM 20306]
 gi|110084139|gb|ABG49293.1| hypothetical protein [Corynebacterium sp. L2-79-05]
 gi|295967617|gb|EFG80879.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 268

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPE--LDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 265


>gi|15840463|ref|NP_335500.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CDC1551]
 gi|254231325|ref|ZP_04924652.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis C]
 gi|13880635|gb|AAK45314.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CDC1551]
 gi|124600384|gb|EAY59394.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis C]
          Length = 276

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  +E  +  +           DV  ++  L       LE
Sbjct: 54  LLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDV--DGLE 111

Query: 63  LPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           + R +R  S V  P + ++   S+   +    SG DD + KP    E++AR+  + RR  
Sbjct: 112 ILRRVRE-SDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 170

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++     G + +    R+    G    L   E  +L +LM N  + +++T+I   
Sbjct: 171 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 230

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D A   ++V+ +IS LRKK+ +      + + R +GY +
Sbjct: 231 VWN-YDFAGRTSIVDLYISYLRKKIDSDREP-MIHTVRGIGYML 272


>gi|260596190|ref|YP_003208761.1| DNA-binding transcriptional regulator BasR [Cronobacter turicensis
           z3032]
 gi|260215367|emb|CBA27379.1| Transcriptional regulatory protein pmrA [Cronobacter turicensis
           z3032]
          Length = 220

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G     G++G +L+   +    + L  S    +  ++  L  K    L
Sbjct: 3   LLIVEDDLLLQEGLALALGNEGYALDCAANATEGDALLQSGEYSLIILDLGLPDKDGATL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R+    P++ ++   +L+  +   D+G DD + KP    E+ AR  A+ RR + 
Sbjct: 63  -LSQWRRSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  +   I +    +   +QG    +  +E  +L  LM   G+ V +  +   IY  
Sbjct: 122 HSDNLLQHDDITLNLQTQQVLLQGLPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYSW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+KL    G   + + R +GY ++
Sbjct: 182 QDD-PSSNTLEVHIHNLRRKL----GKTRIRTIRGVGYRLE 217


>gi|225866652|ref|YP_002752030.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225790714|gb|ACO30931.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 229

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLVEDEISIAELQRDYLEISDFQVDVEHSGEMGLQMALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRSRKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|239815964|ref|YP_002944874.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239802541|gb|ACS19608.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 242

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 102/227 (44%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +       D+G ++E  ++ +    L+   R    A+   L+  G   LE
Sbjct: 8   LIVEDDAHIAELLRMHLRDEGYAIE--HAADGHTGLRELERGHWDALVLDLMLPGVDGLE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R  RA ++  P+I IS   S    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRTDA 125

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++ +     G + +    R+  V   +  L  RE  +L +   + GK  ++  + 
Sbjct: 126 LARNARLESGSLTLGNLDIDPVAREVRVDARLIELTPREFDLLYFFARHPGKVFSRLDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 186 NQVWG-YQHDGYEHTVNTHINRLRTKVEADPAEPRRILTVWGRGYKL 231


>gi|229916895|ref|YP_002885541.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229468324|gb|ACQ70096.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 229

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +G   +   ++L+    +  + R  ++ ++  L     + 
Sbjct: 6   ILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPD--GEG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L + +RA S +P++ +S        L     G DD + KP   +E+  RV A  RR+ 
Sbjct: 64  YQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRVS 123

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           GP ++  D  +  V GE   L  +E  +L   + N  + ++K  +F+ 
Sbjct: 124 MMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G       +N V  HI +LR+K+  N      + + + LGY +
Sbjct: 184 VWGES-FFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRL 227


>gi|239917967|ref|YP_002957525.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839174|gb|ACS30971.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 226

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG                   R D+  ++  L   G   +
Sbjct: 6   ILVVDDDEALAEMIGIVLRNDGFEPTFAADGTSALPAFHRERPDLVLLDLMLP--GIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IRA S VP++ ++        +   +SG DD V KP    E++ARV A  R  + 
Sbjct: 64  EVCRLIRAESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +   G      G    L   E  +L  L         +  +   ++G 
Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRGGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             +A +  +V  H+ +LR K+   L    V  + R +GY 
Sbjct: 184 RHQA-DTRLVNVHVQRLRSKVEPDLENPCVVLTVRGVGYK 222


>gi|328553275|gb|AEB23767.1| yvrH [Bacillus amyloliquefaciens TA208]
 gi|328911939|gb|AEB63535.1| Transcriptional regulatory protein yvrH [Bacillus amyloliquefaciens
           LL3]
          Length = 235

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   + +    +   +G+  +   ++             D+  ++  L     +  
Sbjct: 9   LIIDDEREILELIKTVLIREGIDRVITASTARDGLAQFHQENPDLVILDIMLPD--GEGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR  S VP+I +S        +     G DD + KP   +E+  RV A  RR   
Sbjct: 67  DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSSY 126

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++   + GP  +     +    G    L  +E  ++ Y + +  + ++K  ++ A
Sbjct: 127 LQPSQTDTLIKAGPFELHQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQA 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G  D    +N V  HI +LR+K+       D + + + LGY  
Sbjct: 187 VWGE-DFFGSDNTVMVHIRRLREKIETIPSTPDFLVTVKGLGYKF 230


>gi|260888931|ref|ZP_05900194.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
 gi|260861378|gb|EEX75878.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
          Length = 227

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +   ++     E           D   ++  L        
Sbjct: 3   LLVVEDEKKLNELITKKLKKEYYGVDSCFDGEEAVRYVEGTEYDAIILDIMLP--KLDGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + IRA    VP++ ++   ++   +   D G DD + KP    E++AR+  + RR  
Sbjct: 61  EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N      ++V  D +       +  L  RE  ILEYL+ N+GK +++ +I   I+ 
Sbjct: 121 GNADNVVTIANLKVDLDAKTVFRDDLLIKLSGREYSILEYLIRNKGKILSRERIEDHIWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV++ +I  LRKK+ +      + + R LGY +
Sbjct: 181 -YDYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVL 220


>gi|255308636|ref|ZP_05352807.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 230

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       + G ++    + + +E L    +E++  +   ++      +
Sbjct: 5   ILVVDDEKEIRDLIEIYLLNSGYNV--IKAEDGKEALDILKKENIHLMILDIMMPKMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P++ +S        +    +G DD + KP +  E+  RV ++ RR   
Sbjct: 63  EVCRKVRESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYY 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +  + G + +  +     V G    L  RE  IL  L  N+G+  +  +IF
Sbjct: 123 FSGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++         N V  H+S++R K+     G   + +   +GY I+
Sbjct: 183 EKVWKEK-YYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIE 229


>gi|218905898|ref|YP_002453732.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228929721|ref|ZP_04092738.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|218536884|gb|ACK89282.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228829900|gb|EEM75520.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 229

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|152971957|ref|YP_001337066.1| DNA-binding transcriptional regulator QseB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150956806|gb|ABR78836.1| putative 2-component transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 219

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F +    +    SA  D + ++  L   G   L
Sbjct: 3   ILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLP--GIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R      P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWRDKGRHEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + +  +     + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDDEVSSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|123440802|ref|YP_001004793.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087763|emb|CAL10549.1| two-component system response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 219

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G        G + +   +      L  S++  +  ++  L  +   VL
Sbjct: 3   LLIVEDDELLQRGIAMALTSGGYACDCAGTAAQAHSLLLSSQYSMVILDLGLPDQDGAVL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR + 
Sbjct: 63  -LRQWRRQHITLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  +   + +    +   +QG+   +  +E  IL  L+   G+ V +  +   +Y  
Sbjct: 122 QSDNLIQQDDLSLNLSTQQVCLQGQALEVTPKEFAILSRLIMRAGQTVNRELLQQDLYTW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 182 NDDLG-SNTLEVHIHNLRRKL----GKDRIRTVRGIGYRLE 217


>gi|187927399|ref|YP_001897886.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241661925|ref|YP_002980285.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309779901|ref|ZP_07674655.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|187724289|gb|ACD25454.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240863952|gb|ACS61613.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308921260|gb|EFP66903.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score =  227 bits (580), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + +       D+G ++   ++ +     +   R +  A+   L+  G   LE
Sbjct: 8   LLVEDDAHIAELLRMHLRDEGYAV--VHAADGHAGQREMERGNWDALVLDLMLPGIDGLE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R  R  ++  P+I IS   +    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 66  ICRRARVQARYTPIIIISARSTEVHRILGLELGADDYLAKPFSVLELVARVKALIRRTDA 125

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++ +     G + +    R+  V G+   L  RE  +L +   + GK  ++  + 
Sbjct: 126 LARNARMESGSLTLGNLEIEPLAREVRVDGKPIELTPREFDLLHFFARHPGKVFSRLDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 186 NQVWG-YQHDGYEHTVNTHINRLRAKVEVDPAQPRRILTVWGRGYKL 231


>gi|330006922|ref|ZP_08305793.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS
           92-3]
 gi|328535638|gb|EGF62088.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS
           92-3]
          Length = 229

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   + D  + +   +G  +  F          +    DV+ ++  L        
Sbjct: 6   IWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGLPD--ISGF 63

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +   +  +P++ ++        L   + G DD + KP   RE+ ARV  + RRL+
Sbjct: 64  ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G   +          G+   L R E  +L+ L+   G+  ++ Q+   +
Sbjct: 124 KFAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    E+++   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WSDAWESLD-RTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226


>gi|323136985|ref|ZP_08072065.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322397746|gb|EFY00268.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 237

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 126/220 (57%), Positives = 167/220 (75%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           MF+++D+R LV +GY   FG +G++  GF   +F +W+ S+   DV AIEAFLIG+  + 
Sbjct: 1   MFIIVDERDLVTNGYACRFGQEGIASAGFRPGQFRDWVDSAVEGDVQAIEAFLIGECPER 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+PR+IR  SQ P+I +++ PSL+ TL  F +GVDDVV KP+H REILARV AI RR +
Sbjct: 61  EEIPRLIRRRSQAPVIAMNEAPSLEQTLGLFSAGVDDVVRKPVHVREILARVHAIRRRAE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              + A  G I+VF +G DP V GEV  LPRRERRILEYL+ NRG+R+ K+QIF+A+YGL
Sbjct: 121 ARQDCAAVGGIQVFFNGSDPVVNGEVLALPRRERRILEYLVVNRGRRLTKSQIFNAVYGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD+ VEENV+ESHISKLRKKLR +LG+DP++S+RFLGY +
Sbjct: 181 FDDDVEENVIESHISKLRKKLRARLGYDPIESQRFLGYLL 220


>gi|315499028|ref|YP_004087832.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315417040|gb|ADU13681.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 226

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D   +     A   D G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   ILLAEDDPDLSRQLKASLQDAGYVVDHAPDGEEAHFLGDTEPYDCVILDLGLPKIDGVSV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  R  R     P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ RR  
Sbjct: 63  LE--RWRRDGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G +R+        V GE   L   E R+L Y+M ++ + +++T++   +Y 
Sbjct: 121 GHAQPLLVCGGVRLDPRAARASVNGEPLRLTSLEYRLLHYMMLHQSRVISRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G + +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFMGRLRKKI----GTERIETVRGLGYRL 216


>gi|238917107|ref|YP_002930624.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238872467|gb|ACR72177.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 225

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 8/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD + ++          G ++ E  + +E  +    +    +  ++  +        
Sbjct: 7   LVVDDESRMRKLVSDFLTRKGYAVIEAADGVEAVDTFMENKDIALIILDVMMPR--MDGW 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S+VP+I ++        L  F+ G D+ + KP   + + ARV AI RR   
Sbjct: 65  EVCRQIRKDSKVPIIMLTAKGEEMDELQGFECGADEYIAKPFSPKILTARVDAIIRRAYG 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             SN   E G I +       ++ GE   L  +E  +L Y + N+G  +++ +I + ++ 
Sbjct: 125 VDSNEIIEIGGITIDKAAHIVKIDGEEIELSYKEFELLTYFVENKGLALSREKILNNVWN 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   +   +++H+ KLRKK+  K   D + +   +GY  
Sbjct: 185 -YDYYGDARTIDTHVKKLRKKMGEKG--DYIKTIWGMGYKF 222


>gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
 gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
          Length = 228

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 104/222 (46%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   ++             L  F +  +  ++LQ + + D++ ++  L   G    
Sbjct: 5   LIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDN-KVDLAILDLMLP--GMNGY 61

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + IR+      +P+I +S        +   D G DD + KP    E+ AR+ ++ RR
Sbjct: 62  DILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K      +   + +  D R   ++ E   L  +E  +L+YL  N G+ V++ ++ + I+
Sbjct: 122 SKKDERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   E   ++ HI+ LRKKL N+     + S R +GY +
Sbjct: 182 G-YDFIGESRTLDVHINSLRKKLGNEYAH-WIQSVRQVGYRL 221


>gi|325261172|ref|ZP_08127910.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032626|gb|EGB93903.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 230

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 84/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D            +   N  E           D+  ++  L   G    
Sbjct: 5   ILIIEDEESIADLEKDYLELSDFEVSVANDGEIGRRKALEEDFDLIILDLMLP--GVDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 63  EICRQVRDQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   E   +++ +  R   V GE      +E  +L +L  +      K ++F
Sbjct: 123 LIGSNVEENEIIEIRGLKIDTTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYTKEELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 183 QEIWDM-ESIGDIATVTVHIKKIREKVEYDTSHPQYIETIWGVGYRF 228


>gi|26249595|ref|NP_755635.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           CFT073]
 gi|227887735|ref|ZP_04005540.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972]
 gi|300973288|ref|ZP_07172127.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301048153|ref|ZP_07195190.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|26110003|gb|AAN82208.1|AE016766_296 Transcriptional Regulatory protein qseB [Escherichia coli CFT073]
 gi|227835131|gb|EEJ45597.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972]
 gi|300299989|gb|EFJ56374.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300410868|gb|EFJ94406.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|307555121|gb|ADN47896.1| transcriptional regulatory protein QseB [Escherichia coli ABU
           83972]
 gi|315295065|gb|EFU54402.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
          Length = 219

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G  ++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFRVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|295693701|ref|YP_003602311.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031807|emb|CBL51286.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 228

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G       S + E   + S   D+  +   ++      +
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGK-EAITKLSTTPDIVLMILDVMMPNMSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR + 
Sbjct: 62  DVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121

Query: 122 S-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +  +IF 
Sbjct: 122 QVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++   +  V    V  H+S LR K++    G D + +   +GY ++
Sbjct: 182 RVWQQ-ESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227


>gi|228933205|ref|ZP_04096061.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826366|gb|EEM72143.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 242

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKV--FSAYNGEEALEIINNNSIQIAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHITRLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|120404638|ref|YP_954467.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957456|gb|ABM14461.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 246

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +   +   +S             DV  ++  L   G   +E
Sbjct: 15  LVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLALP--GIDGVE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR +  
Sbjct: 73  VCRQLRTFSDAYVVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPRTV 132

Query: 123 NNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             GP+ +   GR   +  E   L R E  IL  L +      ++
Sbjct: 133 ATPISAATAADEPPPRAFGPLAIDVAGRQVFIDDEPVLLTRTEFDILAALSSRPAVVFSR 192

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            Q+  A++G       E++V+ HI  LR+KL  +      V + R +GY +
Sbjct: 193 RQLLEAVWGDS-WGGNEHLVDVHIGHLRRKLADDPADPRYVITVRGVGYRM 242


>gi|29831247|ref|NP_825881.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|81838270|sp|Q82EB1|CSEB_STRAW RecName: Full=Transcriptional regulatory protein CseB
 gi|29608362|dbj|BAC72416.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 235

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 101/237 (42%), Gaps = 30/237 (12%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++        DG ++    +G + LE         R D++ ++  +   G 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRA----NRPDIALLDVMVP--GL 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 62  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121

Query: 119 LKVSN---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
              ++                    G + + ++G +    G+   L   E R+L    + 
Sbjct: 122 FGHASGPNSRPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFSSA 181

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G  +++ ++   ++  +    +  VV+ H+ +LR K+    G D +D+ R  GY +
Sbjct: 182 PGTVLSRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIDTVRGFGYKL 233


>gi|114331353|ref|YP_747575.1| two component transcriptional regulator, winged helix family
           protein [Nitrosomonas eutropha C91]
 gi|114308367|gb|ABI59610.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas eutropha C91]
          Length = 228

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+++         G  ++  N+ E   +L +  R + + I+  L   G+  L
Sbjct: 3   ILVIEDEFLLQNQIRQQLEAAGYMVDTCNNGEEGLFLATEYRLNAAIIDIGL--SGKSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + +R   S +P++ ++   S Q  +   ++G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVIKALRQRGSLLPILILTARSSWQDKVRGLETGADDYLTKPFQMEELQARVKALLRRAN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     E GPI V    +   + G    L   E R+LE L+ +RG+ ++K  +  A+Y 
Sbjct: 121 GIPQTLLECGPIAVDMTAQQVSINGVNIELTSFEYRLLEELVRHRGEVLSKQILADALY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS--IDWN 223
             DE  + NV+E  I +LR+KL       P+++ R  GY   ++ N
Sbjct: 180 PHDEDRDSNVLEVMIGRLRRKLDPAGTLKPIETMRGRGYRFILECN 225


>gi|160895900|ref|YP_001561482.1| two component heavy metal response transcriptional regulator
           [Delftia acidovorans SPH-1]
 gi|160361484|gb|ABX33097.1| two component heavy metal response transcriptional regulator,
           winged helix family [Delftia acidovorans SPH-1]
          Length = 230

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      L  S   D+  ++  L        
Sbjct: 3   LLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVMLPDV--DGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A  QVP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  +R +   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY++D
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGYTLD 222


>gi|116617476|ref|YP_817847.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227432676|ref|ZP_03914649.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|116096323|gb|ABJ61474.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|227351558|gb|EEJ41811.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 230

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 99/230 (43%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   E   + + +E L       D++ +   ++      
Sbjct: 3   ILVVDDDIEIAELLEIYLKNEGY--EPIMADDGKEALSKLNTNPDIALMILDVMMPNMNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +R  S++P++ +S        +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  LDVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAE 120

Query: 121 -----VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 + +  + G + +  D  +     G++  L   E  IL  L ++  +  +   IF
Sbjct: 121 NAVQDQTPDVLDIGSLIINKDSHEVKTSTGDLVNLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++   +  V    V  H+S LR K+     G   + +   +GY I+ N
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229


>gi|262280534|ref|ZP_06058318.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258312|gb|EEY77046.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 236

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  L G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     +++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +     +   + +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKMIDANGLILDPVSQRVSFGDSILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWGG-NVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227


>gi|94501865|ref|ZP_01308376.1| hypothetical protein RED65_02198 [Oceanobacter sp. RED65]
 gi|94425998|gb|EAT10995.1| hypothetical protein RED65_02198 [Oceanobacter sp. RED65]
          Length = 221

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 8/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG      +   + + F++++           D+  ++  L       L
Sbjct: 3   ILLLEDDQALADGLKQSLKNHNYACDQFDTIKAGMSAFEQESYDLVLLDLGLSD--GDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
              + +R  S  P++ ++    ++  +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 61  NFLQHVRKKSATPVMILTARDQIEDKIKGLDLGADDYMPKPFDVNELLARMRALLRRSVG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N      + +    R    +     L RRE  +LE L  ++ K + ++Q+  ++Y  
Sbjct: 121 ESSNNITVQGLNINLQARTLSFENRDISLSRREFNLLEALATHQDKVMTRSQLEHSLY-S 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D+ +E N +E HI  LRKKL   +    + + R +GY I
Sbjct: 180 WDDEIESNALEVHIHNLRKKLPVAI----IKTVRGVGYMI 215


>gi|116624553|ref|YP_826709.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227715|gb|ABJ86424.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 229

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + V         +   +++     E   +  +    D+  ++  L  K     
Sbjct: 3   ILLVEDESRVAGFLAKGLREQAYAVDLAADGESALYQAAVNHYDLVILDVMLPLK--NGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++   S+   +   DSG DD + KP   +E+LAR+ A+ RR  
Sbjct: 61  AVCRELRAAGFSAPILMLTARDSIDDRVAGLDSGADDYLVKPFDFKELLARLRALSRRSG 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + V +     E  G +  L  +E  +LE+LM N+ + V +  I   ++ 
Sbjct: 121 DPRPEALRVADLTVNTASHAVERGGRIISLTAKEYALLEFLMLNQDRVVGREAIAQHVWE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   NV++ +I +LR KL        + ++R  GY +
Sbjct: 181 ET-FDAFTNVIDVYIKRLRAKLDGPGSPRLIHTRRGEGYIL 220


>gi|297155941|gb|ADI05653.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 272

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 92/244 (37%), Gaps = 35/244 (14%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   + +         G+++    +        +   +D+  ++  L       ++
Sbjct: 6   LLIEDDETIAEPLAEGLARYGLTIHHVTTGAAG---LAGPYDDIVLLDLGLPD--MDGID 60

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++        +   + G DD + KP   RE++AR+ A+ RR   +
Sbjct: 61  VCRGIRQISDVPIIMLTARGEEADRVLGLELGADDYLAKPFSIRELIARIRAVTRRTGRA 120

Query: 123 NNRAE--------------------------TGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
              A+                            P+ V    R   V   +  L  +E  +
Sbjct: 121 EPPADRPAPFAVPSAVLSSAPEPAFAGFAQPAPPLVVDRRTRQVWVGEALISLTPKEFEL 180

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           L  L  + G   ++ QI   ++           ++ HI+ LR+KL +      + + R +
Sbjct: 181 LALLTEDPGAVYSRQQILDQVWDPH-FHGPTKTLDVHIAALRRKLGDPA---WIQTLRGV 236

Query: 217 GYSI 220
           G+ +
Sbjct: 237 GFRL 240


>gi|26990917|ref|NP_746342.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985936|gb|AAN69806.1|AE016619_4 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 227

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G  A     G++++   +      +  +A+ DV  ++  L    E  L+
Sbjct: 4   LLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGLPD--EDGLK 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L   +R   +  P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLHRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N  E GP+R      +  + G+   L RRE+ +L+ L+ N G+ ++  Q+   +YG 
Sbjct: 122 RAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQALLQNPGRVLSSEQLKDCVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL    G   V++ R LGY +
Sbjct: 182 SDE-VESNALNVHIHHLRRKL----GNGIVETVRGLGYRL 216


>gi|302871716|ref|YP_003840352.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574575|gb|ADL42366.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 232

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +   F +    + L+      V  +   ++   +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYN--TFEADSGVQALEILKNNKVDLVILDIMMSDKDGY 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR       +P+I +S        +   + G DD + KP   +E++ RV A+ RR
Sbjct: 62  EVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 119 LKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++      E     G + V    R  +   +   L  +E  +L+ L+ N+G+ + +  I 
Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  +
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFN 228


>gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 243

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 102/228 (44%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD A ++          G  +    + + EE L++      D+  ++  +      
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDV--VTAADGEEALETFRLTEPDLVVLDVMMP--KLD 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+
Sbjct: 64  GYGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRI 123

Query: 120 K-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++
Sbjct: 124 DKNGASGIPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSE 183

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           I   ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 184 ILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|226953341|ref|ZP_03823805.1| positive response regulator for the pho regulon, autophosphorylate
           and phosphorylate sensor [Acinetobacter sp. ATCC 27244]
 gi|294651956|ref|ZP_06729245.1| phosphate regulon transcriptional regulatory protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835879|gb|EEH68262.1| positive response regulator for the pho regulon, autophosphorylate
           and phosphorylate sensor [Acinetobacter sp. ATCC 27244]
 gi|292822188|gb|EFF81102.1| phosphate regulon transcriptional regulatory protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 236

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         +    +    R  +  ++  L G G   +
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R ++     +++P+I ++        +   D+G DD + KP   RE+++R+ A+ RR
Sbjct: 65  DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +    +       +  +   E R+L + M +  +   + Q+   
Sbjct: 125 ANALSGEKVIDANGLMLDPVSQRVSFGESILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  +E+  ++ HI +LRK L        V + R  GY  
Sbjct: 185 VWGG-NVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227


>gi|210614659|ref|ZP_03290270.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
 gi|210150649|gb|EEA81658.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
          Length = 224

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
            +++DD   V D   + F      +  + + + E  L Q++   D+  ++  +   G   
Sbjct: 5   LLIVDDERGVVDMLKSYFEMQSFVV--YTAYDGETALKQAACHPDLVLLDINMP--GMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L +   IR+H   P++ ++        +  F  G DD + KP    E+ ARVAA  RR  
Sbjct: 61  LTVCEKIRSHISCPILFLTARIETADKIKGFQVGADDYIIKPFDIDELGARVAAHLRREN 120

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++E      + +    R+  + G    L ++E  I+E L  N G+   + +I+ A+
Sbjct: 121 RKQGQSELRFFSEMVIDYSKREVSINGTPVNLSKKEFDIVELLSLNAGQVFDRERIYEAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +GL D     + +  HI K+R K         +++   +GY   WN
Sbjct: 181 WGL-DGEGNSDTIMEHIRKIRSKFTALSHHSYIETVWGVGYK--WN 223


>gi|194476778|ref|YP_002048957.1| two-component response regulator [Paulinella chromatophora]
 gi|171191785|gb|ACB42747.1| two-component response regulator [Paulinella chromatophora]
          Length = 248

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++    A     G  +    + +  E L++  R +   +   ++       
Sbjct: 11  ILIVDDEASIRRILEARLSMIGYQV--VTASDGAEALEAFHRCEPDLVVLDVMMPRLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD + KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYLIKPFSPKELEARIRCVLRRVEK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   + G +R+ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 DQTAGIPNSGVIQVGDLRIDTNKRQVFRNDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|126699068|ref|YP_001087965.1| two-component response regulator [Clostridium difficile 630]
 gi|115250505|emb|CAJ68329.1| Two-component response regulator [Clostridium difficile]
          Length = 234

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 103/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +  G       +G S++    L   + + SS    +  ++  L        
Sbjct: 4   LLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTLPD--GTGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  SQVP+I ++        +   D G DD + KP   RE+++R+ A+ RR   
Sbjct: 62  ELCQYIRGFSQVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKGN 121

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       + G + +++         +   L   E ++L  L+ N+   +++TQI   +
Sbjct: 122 TSEENKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
           + +  + V +N +  +I +LR+K+ + L     +++ R +GY 
Sbjct: 182 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYK 224


>gi|157162501|ref|YP_001459819.1| DNA-binding transcriptional regulator QseB [Escherichia coli HS]
 gi|157068181|gb|ABV07436.1| transcriptional regulatory protein QseB [Escherichia coli HS]
          Length = 219

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + G+   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|331092529|ref|ZP_08341351.1| hypothetical protein HMPREF9477_01994 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400750|gb|EGG80353.1| hypothetical protein HMPREF9477_01994 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        D   +  F + +       + + D++ ++  L        
Sbjct: 3   ILVVDDEREIADVVELYLQSDQYHIFKFYTGQEALDCIDNTKIDLALLDVMLPD--IDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P+I ++        +     G DD + KP +  E++ARV A  RR   
Sbjct: 61  EILKRIREKYTFPVIMLTAKIEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYTQ 120

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+         + G + +     +     +   L   E  IL  L  NRG+ ++  ++F
Sbjct: 121 YNDVGKNEGDIIDFGALFLNRTSHECVYYDKELTLTPIEFDILWLLCENRGRVISSEELF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
             ++         N V  HI  LR+K+    G  D + +   +GY ++
Sbjct: 181 RTVWKEQYYKNSNNTVMVHIRHLREKMSEPTGKSDFIKTVWGVGYKVE 228


>gi|296454605|ref|YP_003661748.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296184036|gb|ADH00918.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 258

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 24  IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPD--IDGF 81

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 82  TVTRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 141

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 142 EQVEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+      D           +++KR +GY I
Sbjct: 202 W-QYDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 253


>gi|89893852|ref|YP_517339.1| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51]
 gi|219668228|ref|YP_002458663.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333300|dbj|BAE82895.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538488|gb|ACL20227.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 237

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++          G  +    S E    L +    D+  ++  L   G   LE
Sbjct: 9   LVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLP--GIDGLE 66

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
           + + IR     P +I ++        +   + G DD + KP +  E++AR+ A+ R   R
Sbjct: 67  VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + + +         +   L   E  +L+  M N GK + + ++ + I+
Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           G  D   +   ++ HI +LR+K+ +       + +    GY 
Sbjct: 187 GE-DYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYR 227


>gi|329905059|ref|ZP_08273989.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327547769|gb|EGF32543.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 102/223 (45%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
            ++++D   + +       + G +    N+  E  E++Q      +  ++  L  + G +
Sbjct: 8   ILIVEDEPSIVELVSYTLREAGWNTMAVNTTAEAWEFIQRRT-PHLILLDWMLPDQSGLR 66

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +L   R  R    +P+I ++     +  +   D+G DD V KP   RE+ AR+ A+ RR 
Sbjct: 67  LLSRIRADRQLQAIPVIMLTAKTMEEDKIAGLDNGADDYVTKPFSPRELTARIKALLRRK 126

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + +    GP+ +        +  +   +   E ++L++ +A+  +  ++TQ+   +
Sbjct: 127 SPEHAQSMMRAGPVTLDPISCSVSLSDQKIEIGHAEFKLLKFFLAHPDRVFSRTQLLDKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LRK L+       + + R +GY +
Sbjct: 187 WGDH-AVIEERTVDVHVLRLRKALKEA--EHLIRTVRSVGYML 226


>gi|251779288|ref|ZP_04822208.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083603|gb|EES49493.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 236

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G       +   EE L     ++V  +   ++      +
Sbjct: 7   ILIVDDEKEIRDLVEIYLKSEGY--LTVKACNGEEALNMIREQNVDLVILDVMMPKLNGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR   ++P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 65  DTCLKIREEREMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYK 124

Query: 122 SNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N +            E   + +  +  +  +   +  L   E  IL  L  NRGK  + 
Sbjct: 125 FNTKHMEDEKEEENIIEIDELTINLETHEVILNNNLVKLTPTEFDILLLLAKNRGKVFSI 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             I+ +++   +    +N V  HI K+R+K+  +      + +   +GY I+
Sbjct: 185 ENIYESVWNQ-EFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIE 235


>gi|229169569|ref|ZP_04297273.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613959|gb|EEK71080.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 242

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +    + + EE L+   + DV  I   ++      +
Sbjct: 15  ILIVDDEKEIRKLIAIYLKNEGYEV--LQAGDGEEGLEIVRKRDVHLIVLDIMMPKIDGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 73  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N  E G I++    R   +  E   L  RE  +LE L  N+G  +   QI+
Sbjct: 133 MSGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIY 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 193 ERVW-KEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGYKIEKD 241


>gi|116074401|ref|ZP_01471663.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069706|gb|EAU75458.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 280

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 98/231 (42%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+   +      G  +      E    +  S   D+  ++  L        
Sbjct: 37  ILVVDDEPAVRRVLVMRLQLAGYRVICAEDGEQALEVFHSESPDLVVLDVMLP--KMDGF 94

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A+I RR+  
Sbjct: 95  AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRVGR 154

Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  AE             G + V ++ R      +   L   E  +LE L    G+ V 
Sbjct: 155 GSATAEPREIPVGQGVLRVGDLVVDTNRRQVTRGTDRISLTYTEFSLLELLFREPGRVVP 214

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 215 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 265


>gi|52140690|ref|YP_086139.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|51974159|gb|AAU15709.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             R L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKRLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMRNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|254518068|ref|ZP_05130124.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911817|gb|EEH97018.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 237

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G   +   +   EE L   +  DV  I   ++      +
Sbjct: 6   ILIVDDEKEIRDLIDIYLKGEGY--DTIKAENGEEALNILSSNDVDLIILDIMMPKVNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR   ++P+I +S        +   ++G DD + KP +  E++ARV +  RR K 
Sbjct: 64  EACLKIREEREMPIIMLSAKSEDMDKILGLNTGADDYLTKPFNPLELVARVRSQLRRYKR 123

Query: 122 -------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                         +N  E   I +  +  +    GE   L   E  IL  L  NRGK  
Sbjct: 124 FNNTLAKEELVVKQDNVLEIDEISINLETHEVFKDGEEIKLTPTEFDILVLLGENRGKVF 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +   I+++++   +    +N V  HI K+R+K+         + +   +GY ID
Sbjct: 184 SIENIYNSVWKQ-EFMQSDNTVMVHIRKVREKIEEDPRKPKFIKTVWGVGYKID 236


>gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 252

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + D        +G  +    +           + D   ++  L         
Sbjct: 29  LVVDDESTLADLLSMALRYEGWQVRTAGNGMAALSAARQFQPDAVVLDVMLPD--LDGFA 86

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     VP++ ++   +++  +     G DD V KP    E++AR+ A+ RR   
Sbjct: 87  VLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 146

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G + +  D  +    G++  L   E  +L YLM N  + ++K QI   
Sbjct: 147 AVTARQEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQILDR 206

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 207 VWN-YDFGGQANVVELYISYLRKKI-DVGRAPMIHTLRGAGYVL 248


>gi|290955975|ref|YP_003487157.1| two component system transcriptional regulator PhoP [Streptomyces
           scabiei 87.22]
 gi|260645501|emb|CBG68589.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL
           POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22]
          Length = 247

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++    A     G  +   ++ +         R  +  ++  L        
Sbjct: 14  LLVVEDEPSIRTLLEATLRLTGYEVSSTDTGQSALVEVERLRPHLVLLDVMLPD--LDGF 71

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA     P++ ++        +     G DD V+KP    E+L R+ AI RR  
Sbjct: 72  EVTRRLRAAGDECPILFLTARTGTDDRIQGLSVGGDDYVSKPFSIEEVLLRIEAILRRTA 131

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +      +      + +     +    G+   L   E ++L YL++N G+ V+K QI 
Sbjct: 132 PVDAALPPPSVLRYADLELDEGAHEVHRAGQYIALSPTEFKLLAYLLSNAGQVVSKVQIL 191

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +D A +  ++E+++  LR+K+ +      + + R +GY +
Sbjct: 192 DHVW-SYDFAGDARIIETYVRYLRRKI-DCFEPPLIQTVRGVGYCL 235


>gi|237729952|ref|ZP_04560433.1| DNA-binding transcriptional regulator QseB [Citrobacter sp. 30_2]
 gi|226908558|gb|EEH94476.1| DNA-binding transcriptional regulator QseB [Citrobacter sp. 30_2]
          Length = 227

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 11  ILLIEDDTLIGDGLKTGLSKMGFSIDWFTEGRQGKEALYSAPYDAVILDLTLP--GIDGR 68

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R  RA+  Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 69  DILREWRANGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +          GE   L  +E  +LE LM N+G+ + +  I   +Y 
Sbjct: 129 GQASNTLCHGQVTLDPGALVATAAGEPLSLKPKEFALLELLMRNKGRVLPRKLIEEKLY- 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 188 TWDENVSSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 224


>gi|57234165|ref|YP_181773.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224613|gb|AAW39670.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 227

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +   A    +G  +    + +           D+  ++  L        
Sbjct: 5   ILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPDLIILDLMLPE--ISGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R IR  S+VP+I ++    L   L   + G DD + KP   +E++AR     RR + 
Sbjct: 63  DVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRRSEH 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S        + + ++ R  ++ GE   L   E  IL  L A+ G+  ++ QI   + 
Sbjct: 123 TPASEPVLVIDRLEIDTERRLVKMDGENIDLTATEFDILANLAASPGRVFSRMQILDKL- 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                   E  ++SHI  LRKK+  +      + +   +GY +
Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTVHGVGYKM 223


>gi|30261916|ref|NP_844293.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527169|ref|YP_018518.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184751|ref|YP_028003.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319193|ref|ZP_00392152.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167633325|ref|ZP_02391650.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638767|ref|ZP_02397042.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686070|ref|ZP_02877292.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707305|ref|ZP_02897760.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650467|ref|ZP_02933434.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566270|ref|ZP_03019188.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229603598|ref|YP_002866289.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684475|ref|ZP_05148335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724002|ref|ZP_05185788.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734778|ref|ZP_05192490.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741180|ref|ZP_05198868.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254759968|ref|ZP_05211992.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256542|gb|AAP25779.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502317|gb|AAT30993.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178678|gb|AAT54054.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167513231|gb|EDR88602.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167531363|gb|EDR94041.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127804|gb|EDS96676.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669767|gb|EDT20508.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083611|gb|EDT68671.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562405|gb|EDV16372.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229268006|gb|ACQ49643.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 232

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKV--FSAYNGEEALEIINNNSIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231


>gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 223

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +               L  S + D   ++  L       +
Sbjct: 5   ILIIEDEKNIARFLELELKHEQFETVVAYDGRTGLELAESEQFDCILLDVMLPQ--LNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ I+    +   +   D+G DD V KP    E+LAR+ +I RR++ 
Sbjct: 63  EVCRRIRKTSNVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSILRRVQP 122

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    +     + +  D  +   +     L R+E  +L+ L+ NR     + +I   ++G
Sbjct: 123 AQKSKQLILRELEIDVDAYEVIFENNKIELTRKEFDLLKLLVENRNLVCTRERILEEVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE NVV+ +I  LR KL+ +     +++ R +GY +
Sbjct: 183 -FDTEVETNVVDVYIRHLRTKLQTEH-TPYIETVRGVGYVM 221


>gi|229060772|ref|ZP_04198127.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228718419|gb|EEL70051.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++    +++ +E L      +V  I   ++       
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNV--LEAIDGKEALSIFEEHEVHLIILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYS 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I V    R   V GE   +   E  IL YLM N+G  +++ Q+ +
Sbjct: 123 STINVSTADTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYLMQNQGIVISREQLIT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGEK--ATCIVTVVRTGYKFE 225


>gi|170724659|ref|YP_001758685.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810006|gb|ACA84590.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 243

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            +    +L+           D+  I+  L       L
Sbjct: 15  ILLVEDEPDLANLVKLNLNTLNFDVIHCTTLKQANQNLELKSFDLILIDRTLPD--GDGL 72

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + +R A  + P + ++   S    +   +SG DD + KP    E+ ARV A+ RR  
Sbjct: 73  MLCQQLRHAGKETPCMMLTAKDSEADIVLGLESGADDYLTKPFSVLELRARVKALLRRGH 132

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    + +   I +  D R+         L  RE  +L ++  +  +  ++ Q+  A+
Sbjct: 133 QTEHEEQQLDFNGITINCDTREVIAFDTQLELTAREFDLLLFMAKHPKQVFSRLQLLEAV 192

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +G +  +  E+ V SHI++LR KL +     + V +   +GY  
Sbjct: 193 WG-YSYSGYEHTVNSHINRLRAKLSHCTPAAELVKTVWGVGYKF 235


>gi|62182741|ref|YP_219158.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62130374|gb|AAX68077.1| response regulator in two-component regulatory system with BasS
           (OmpR family) [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322717242|gb|EFZ08813.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 222

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +GF+++   E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGFSTVRAAEHSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +          G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|295704707|ref|YP_003597782.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294802366|gb|ADF39432.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 227

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++   S +       +   D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKV--SGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EVCKQIRAAKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +++ E        + + +  R   V  +      +E  +L++++++  + ++K  +F  
Sbjct: 122 LSDKQEKRMIHIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           I+G FD + + + V  HI KLR+KL  N      +++    GY  +
Sbjct: 182 IWG-FDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGYRFN 226


>gi|259503600|ref|ZP_05746502.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|259168424|gb|EEW52919.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
          Length = 228

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +    L+    L+++  +D   I   L+      +
Sbjct: 4   ILIIEDEENLANFVNLELKHEGYDTDV--ELDGRAGLEAALNQDFDVILLDLMLPELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR   
Sbjct: 62  EVARRVRELKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K          + +  + R      EV  L +RE  +L  LM N    +++ ++ 
Sbjct: 122 EDGNSKEHQTTVNYKDLTIEKENRIVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
 gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
          Length = 231

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 97/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +           L    + D+  ++  +   G   L
Sbjct: 6   IMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEKPDLILLDVEMP--GMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  + +P++ +S    L   +   ++G DD + KP    E+ AR+ AI RR   
Sbjct: 64  EVCRRIRLKTTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILRRNGW 123

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            NN        +   + +  D R+  ++G    L  +E ++L  L     +     Q++ 
Sbjct: 124 RNNVEDQLTILKYKDLHIHVDARELYLEGAQVKLYHKEFQLLLLLAQTPNRVWTAEQLYD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++G + E  +   V+ HISKLRKK+  +    + + + R  GY   W
Sbjct: 184 QVWGYYSE-GDVQTVKVHISKLRKKIEKDPANPEFIQTVRGFGYKFIW 230


>gi|297530122|ref|YP_003671397.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297253374|gb|ADI26820.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 226

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D        +G   ++  +  E  ++L+     D+  ++  +       
Sbjct: 4   LLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRH-HADLVLLDVMMPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R IR+ S VP++ ++        +     G DD V KP    E+LAR+ A+ RR  
Sbjct: 61  WETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVAKPFDEAELLARIEAVLRRTA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      +    +      + +   L  +E  IL  L+ +  +  ++ QI ++++G 
Sbjct: 121 GGRSAIRAAGLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
           +    EE  V+SH+  +R+KLR       + + +   +GY  +
Sbjct: 180 YLADTEERTVDSHMKNIREKLRKAGFPADEYLQTVWGVGYKWE 222


>gi|229083792|ref|ZP_04216105.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
 gi|228699512|gb|EEL52184.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
          Length = 216

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 21/221 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           + ++GY      +G   EG+N  +         + D+  ++  +  K     EL   IR 
Sbjct: 1   MEREGYEVYTAVNGT--EGWNVFQ-------QYQPDLIILDLMMPKK--DGWELCEEIRQ 49

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKV 121
           +S VP+I ++     +  +     G DD V KP   RE++ RV  I RR         + 
Sbjct: 50  YSNVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNYVTIQTQEP 109

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   E   +++    R   V      L  +E  +L  +  +  +  +++Q+   I+G F
Sbjct: 110 VSGMIEFLDLKICPTKRRVFVCEHEIELTVKEFEVLYIMAKHPKQVFSRSQLLEQIWG-F 168

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +     N V   +S+LR+KL         + +   +GY  +
Sbjct: 169 EYEGCTNAVTVLMSRLREKLEKHTTKSRWIHTVWGIGYRFE 209


>gi|332297448|ref|YP_004439370.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332180551|gb|AEE16239.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 233

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 91/228 (39%), Gaps = 16/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+++        DG     F++             D+  ++  L        
Sbjct: 4   IMLVEDNTLIREAVAGYLQLDGHKTVEFDTGAGVLDAVRREIADLIILDVMLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IRA S VP+I ++   S    +  F+ G DD + KP   +E++ RV A+ RR   
Sbjct: 62  ALAKSIRAVSAVPIIFLTAKDSESDRILGFELGADDYICKPFSAKELVLRVQALLRRSGG 121

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S                   + +      + G    L   E +IL YL  N G+ V++ Q
Sbjct: 122 SAETVPGASGEWQQGESRATLDTAKHTLAIDGIDVNLTGAEWKILVYLAENSGQVVSREQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I S  +  F     E  V++HI+ LR KL    G   + + R  GY  
Sbjct: 182 ILSECFNYF-FEGSERTVDTHIANLRAKL----GVGWIVTVRGFGYKF 224


>gi|315646856|ref|ZP_07899971.1| hypothetical protein PVOR_15824 [Paenibacillus vortex V453]
 gi|315277786|gb|EFU41110.1| hypothetical protein PVOR_15824 [Paenibacillus vortex V453]
          Length = 232

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G       S             D+  ++  L  +    L
Sbjct: 6   ILIIEDEGPIADLLAYGLAMEGFETRTAASGAAGFRELEDFSPDLLLLDWMLPDQ--SGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + + A   +P+  I+    +   +   + G DD + KP   RE++AR+  I RRL  
Sbjct: 64  DICKKVTADYNIPIFMITAKSDITDKVLGLEFGADDYITKPFDLREVVARIRTILRRLDQ 123

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +N+               I +  + R  +  G +  L  +E  +L  L  +RGK   +++
Sbjct: 124 ANHVEREEAQEVVIRFKCIEIIMEERLVKKDGSLIDLTPKEFDLLMTLYRHRGKIYTRSE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++G +D   +   V++HI +LRKKL      D + +   +GY  +
Sbjct: 184 LLDLVWG-YDFMGDTRTVDTHIQRLRKKLD---ASDLITTVFGIGYKFE 228


>gi|295102500|emb|CBL00045.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 226

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +F+L DD +L+  G    F   G +L+   +L   E L S  + D+  ++  L       
Sbjct: 4   LFLLEDDLSLI-SGLTFAFKKQGFALDTARTLAEAEALWSDRKYDLLVLDVSLPD--GSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  + +R  S VP++ ++        +   D G DD + KP     +L+RV A+ RR  
Sbjct: 61  FDFCQKVRRTSNVPILFLTASDEEMNIIMGLDMGGDDYLTKPFKLGVLLSRVNALLRRAN 120

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S+      E+G I V          G +  L   E ++L + M +    ++K QI  A+
Sbjct: 121 ASSAGEPVLESGSITVRLLQGQAYKNGILLELTGAEYKLLCFFMQHPNAVLSKEQILDAL 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +    + ++ + +  +I +LR K+ +  G    + + R +GY   WN
Sbjct: 181 WDCDGDYIDSSALTVYIRRLRMKIEDDPGKPQMLLTVRGMGYK--WN 225


>gi|169827613|ref|YP_001697771.1| putative sensory transduction protein [Lysinibacillus sphaericus
           C3-41]
 gi|168992101|gb|ACA39641.1| Hypothetical sensory transduction protein [Lysinibacillus
           sphaericus C3-41]
          Length = 220

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 105/219 (47%), Gaps = 5/219 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD A +++       ++G+ +    + +  + L   A E V  +   ++        L 
Sbjct: 2   VDDDAHIRELVRVFLQNEGLEV--IEATDGVDALSKLASEKVDMVIMDIMMPNMDGWALC 59

Query: 65  RIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
             IR+ H+ +P++ ++        +  F  G DD + KP    E++ RV +I +R +++ 
Sbjct: 60  EEIRSYHTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRIAL 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +   E G +++     + ++ GE+  L  +E  +L  L +  GK  ++ Q+   I+G +D
Sbjct: 120 SQVVEVGNVKLNRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +E  ++ HI ++R++   ++    + + R LGY ++
Sbjct: 179 YEGDERTIDVHIKRIRERFPQEISGFVIRTLRGLGYRLE 217


>gi|254973991|ref|ZP_05270463.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091378|ref|ZP_05320856.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313038|ref|ZP_05354621.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255515794|ref|ZP_05383470.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255648887|ref|ZP_05395789.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306519002|ref|ZP_07405349.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 233

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    R  +S +   ++       +
Sbjct: 5   LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDIDGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I ++        +     G DD + KP    E++ARV ++ RR  + 
Sbjct: 65  VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 124

Query: 123 NNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N              + +    R   +      L  +E  +L +L +N+G+   K QI++
Sbjct: 125 NPAFITDTDCIIINGMIIDKTNRIVSINNIPVQLTSKEFDLLAFLASNKGRVFTKKQIYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   + A +++ + S ISKLRKK+  +      + + R +GY  +
Sbjct: 185 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFN 230


>gi|30264741|ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47778345|ref|YP_021563.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|167633821|ref|ZP_02392144.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638012|ref|ZP_02396290.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685925|ref|ZP_02877148.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705358|ref|ZP_02895822.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651324|ref|ZP_02934155.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568258|ref|ZP_03021166.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033267|ref|ZP_03100680.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040860|ref|ZP_03108158.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044024|ref|ZP_03111261.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|227817460|ref|YP_002817469.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917319|ref|ZP_04080873.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228948416|ref|ZP_04110699.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093770|ref|ZP_04224869.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
 gi|229124237|ref|ZP_04253429.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
 gi|229186929|ref|ZP_04314084.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
 gi|229603997|ref|YP_002868949.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687479|ref|ZP_05151335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725042|ref|ZP_05186825.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736780|ref|ZP_05194486.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741817|ref|ZP_05199504.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254757417|ref|ZP_05209444.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259416|gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47552050|gb|AAT34038.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|167513829|gb|EDR89197.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530622|gb|EDR93324.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129483|gb|EDS98346.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670389|gb|EDT21129.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083150|gb|EDT68212.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560514|gb|EDV14491.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994696|gb|EDX58651.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025360|gb|EDX64030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028314|gb|EDX66923.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227005140|gb|ACP14883.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228596666|gb|EEK54331.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
 gi|228659539|gb|EEL15187.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
 gi|228689655|gb|EEL43463.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
 gi|228811403|gb|EEM57741.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228842309|gb|EEM87403.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229268405|gb|ACQ50042.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|110633248|ref|YP_673456.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284232|gb|ABG62291.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 222

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +         D G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   ILVVEDDKDLNRQISVALEDAGYVVDRAFDGEEGHFLGDTEPYDAIVLDIGLPQMDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  R  R   ++P++ ++        +   D+G DD V KP H  E+LARV A+ RR  
Sbjct: 63  LE--RWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVTKPFHMEEVLARVRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +     ++ G    L   E R+L YLM ++G  V++T++   +Y 
Sbjct: 121 GHASSELYCGPLRLDTKASKADMDGVPLKLTSHEYRMLAYLMHHKGSVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL    G D +++ R +GY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----GVDLIETVRGMGYRM 216


>gi|229099289|ref|ZP_04230220.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229118303|ref|ZP_04247659.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228665133|gb|EEL20619.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228684107|gb|EEL38054.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEEILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEVDVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 239

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   +S +  E L+   +    A+   L+  G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEV--VHSADGAEGLRLLEQGGWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRLDAGTLDVAGLAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|254975018|ref|ZP_05271490.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092407|ref|ZP_05321885.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255516824|ref|ZP_05384500.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649926|ref|ZP_05396828.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683080|ref|YP_003214365.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686678|ref|YP_003217811.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520011|ref|ZP_07406358.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260209243|emb|CBA62540.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212694|emb|CBE03775.1| two-component response regulator [Clostridium difficile R20291]
          Length = 241

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 103/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +  G       +G S++    L   + + SS    +  ++  L        
Sbjct: 11  LLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTLPD--GTGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  SQVP+I ++        +   D G DD + KP   RE+++R+ A+ RR   
Sbjct: 69  ELCKYIRGFSQVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKGN 128

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       + G + +++         +   L   E ++L  L+ N+   +++TQI   +
Sbjct: 129 TSEENKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEKL 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
           + +  + V +N +  +I +LR+K+ + L     +++ R +GY 
Sbjct: 189 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYK 231


>gi|15896754|ref|NP_350103.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026610|gb|AAK81443.1|AE007848_7 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510923|gb|ADZ22559.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 230

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G   E  ++   +E L +     +  I   ++  G   L
Sbjct: 5   ILVVDDDRDIVKLITKSLSYEGF--EMISAYSGKEALCALKENHIDFIILDIMMPGMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR    VP++ +S        +   + G DD + KP   +E+ +R+ A +R++  
Sbjct: 63  DVCRSIRKSYNVPILFLSARDKDIDKIVGLEIGADDYMAKPFSIQELTSRIRANFRKIDR 122

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N      P+ +     +  +      L  +E +IL  L+ N    + + Q
Sbjct: 123 LFKEWNELSPNRERNDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLVHNPNNVLTREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+  ++G  DE  E N V  HI  +RKKL     +D + +   +GY 
Sbjct: 183 IYEHVWG--DEYGELNTVTVHIKNIRKKLG--PEYDFIKTIWGIGYK 225


>gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 241

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   ++D         G  +   +              D+  ++  L        
Sbjct: 14  LVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVMLPD--MDGF 71

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R    + P++ ++    +   +     G DD V KP    E++AR+ A+ RR +
Sbjct: 72  TVTRRLRERGVRTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRRSQ 131

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +          + +  D R+    G    L   E ++L YLM N G+ ++KTQI   +
Sbjct: 132 AHDADSGVLRYADLELDEDAREVRRAGRPVELSPTEFKLLRYLMLNAGRVLSKTQILDHV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+K+ +  G D       + ++R +GY +
Sbjct: 192 W-EYDWRGESAIVESYISYLRRKI-DVPGPDGAPTVPLIHTRRGIGYVL 238


>gi|255657556|ref|ZP_05402965.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452769|ref|ZP_06894458.1| response regulator [Clostridium difficile NAP08]
 gi|296879979|ref|ZP_06903949.1| response regulator [Clostridium difficile NAP07]
 gi|296258388|gb|EFH05294.1| response regulator [Clostridium difficile NAP08]
 gi|296428956|gb|EFH14833.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       + G ++    + + +E L    +E++  +   ++      +
Sbjct: 5   ILVVDDEKEIRDLIEIYLLNSGYNV--IKAEDGKEALDILKKENIHLMVLDIMMPKMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R    +P++ +S        +    +G DD + KP +  E+  RV ++ RR   
Sbjct: 63  EVCRKVRESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYY 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +  E G + +  +     V G    L  RE  IL  L  N+G+  +  +IF
Sbjct: 123 FSGANNEDKDVIEVGAVIIDKEKHSVTVAGNDIILTSREFDILYLLANNKGRVYSTEEIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++         N V  H+S++R K+     G   + +   +GY I+
Sbjct: 183 EKVWKEK-YYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIE 229


>gi|117617885|ref|YP_858673.1| transcriptional regulatory protein CreB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559292|gb|ABK36240.1| transcriptional regulatory protein CreB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 224

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D A + D  I     DG  +E F   +         R D   ++  L       
Sbjct: 5   VIWLVEDEASIADTLIYALQTDGFEVEWFMLGQQLLTRLEQTRPDFLILDVGLPD--ISG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + +R  + +PL+ ++        L   + G DD V KP   RE+ ARV  I RR +
Sbjct: 63  FELCKQVRVLTDIPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRRSQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     + +  +      +G+   L R E  +L+ LM   G+  ++ Q+   ++  
Sbjct: 123 PVAPQPSA-LLVLDEERARIHFRGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWQD 181

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            +E+++   V++HI  +R KLR      + + + R LGYS++
Sbjct: 182 AEESLD-RTVDTHIKTIRAKLREHDPEANLILTHRGLGYSLE 222


>gi|145593524|ref|YP_001157821.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145302861|gb|ABP53443.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         E         R D+  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLMLP--GMSGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR + +
Sbjct: 64  VARSIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDA 123

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                T       I +          GE   L   E  +L  L     +   +  +   +
Sbjct: 124 APELLTIGPPGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +  A +  +V  H+ +LR K+       + + + R +GY 
Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|83594245|ref|YP_427997.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577159|gb|ABC23710.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 227

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V    +    + G   +         +  +    D+  ++  L       L
Sbjct: 3   ILVIEDDKEVAAHLLKGLREAGHVADSVADGRDGLFQAAGEAYDLLIVDRMLPNV--DGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA    VP++ +S    +   +    +G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TIVRTLRASGKTVPVLILSALGEVDDRVKGLRAGGDDYLVKPFAFAELLARIDALTRRTA 120

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S+    R   G + +    R          L  RE R+LEYLM +  + V +T +   +
Sbjct: 121 GSDAEQTRLRAGEVEMDLLARRVTRGSRTIDLQPREFRLLEYLMRHADQVVTRTMLLENV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +  +    + NVV+ HIS+LR+K+        +++ R  GY +  N
Sbjct: 181 WD-YHFDPQTNVVDVHISRLRRKMDEGFAQPFLETVRGAGYVLRTN 225


>gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 249

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +                  D+  ++  L        
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPD--MDGF 74

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ ++    +   +     G DD V KP    E++AR+ AI RR  
Sbjct: 75  TVARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTH 134

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              N+         + +  D  +         L   E ++L YLM N G+ V+K QI   
Sbjct: 135 AIENQDDGVVRVADLILDEDAHEVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDH 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220
           ++  +D   +  +VES+IS LR+K+    G D       + ++R +GY +
Sbjct: 195 VW-EYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243


>gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 239

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D A + D      GD+G  +    S +     L+     D   ++  L   G   L
Sbjct: 7   LIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRLLEQDGPWDALVLDVMLP--GVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ +  RA ++ VP+I IS   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     E G +++    R   V G    L  RE  +L +   +  +  A+ ++
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNQVWG-YQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKL 231


>gi|162139597|ref|YP_216033.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322714084|gb|EFZ05655.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 226

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAHQSPAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218


>gi|92113906|ref|YP_573834.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91796996|gb|ABE59135.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 220

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG       +  +++ F   E    ++++  E  SA+   L       +
Sbjct: 3   ILLVEDDPLLGDGIKTALVREAYTVDWFT--EGHHAIEAAHNETFSAMILDLGLPDMDGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  + +P++ ++   +++  +   D+G DD V KP   +E+LAR+  + RR + 
Sbjct: 61  TVLKRLRESTALPILILTARDAVEERISGLDAGADDYVLKPFDLKELLARLRVVTRRAEG 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +R    G + +          G    L RRE  +L  L  +  K +++ ++ S +YG 
Sbjct: 121 RASRSLTLGALSIDEASHSVSWHGRDVALGRREYALLLELARHPDKVLSRPRLESLLYG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E V  N VE H+  LRKKL   L    + + R +GY +D
Sbjct: 180 WGEEVASNAVEVHVHHLRKKLDKSL----IMTVRGIGYRLD 216


>gi|288937248|ref|YP_003441307.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290512652|ref|ZP_06552018.1| two-component system, OmpR family, catabolic regulation response
           regulator CreB [Klebsiella sp. 1_1_55]
 gi|288891957|gb|ADC60275.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289774993|gb|EFD82995.1| two-component system, OmpR family, catabolic regulation response
           regulator CreB [Klebsiella sp. 1_1_55]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   + D  +     +G  +  F          +    DV+ ++  L        
Sbjct: 6   IWLVEDEQSIADTLVYPLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGLPD--ISGF 63

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R  +  +  +P++ ++        L   + G DD + KP   RE+ ARV  + RRL+
Sbjct: 64  ELCRRMLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G   +          G+   L R E  +L+ L+   G+  ++ Q+   +
Sbjct: 124 KFAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    E+++   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WSDAWESLD-RTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSL 226


>gi|159036559|ref|YP_001535812.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915394|gb|ABV96821.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         E        +R D+  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRESRPDIVLLDLMLP--GMSGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR + +
Sbjct: 64  VARSIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDA 123

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                T       I +          GE   L   E  +L  L     +   +  +   +
Sbjct: 124 APELLTIGPTGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +  A +  +V  H+ +LR K+       + + + R +GY 
Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G S+  F S         +   ++  ++  L        
Sbjct: 7   LMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPD--MDGY 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     V ++ ++     +  L  F++G DD + KP  + E+LAR+ A+ RR  
Sbjct: 65  EVAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKN 124

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S +   + G + ++ + R     G+   L + E  +L YL  N+ + V+K +I  A++G
Sbjct: 125 ISISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + D    +N VE +++ +RKKL      + + + R +GY +
Sbjct: 185 I-DYYGSDNTVEVYVNYIRKKL----SPELIKTIRGVGYKL 220


>gi|332307159|ref|YP_004435010.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174488|gb|AEE23742.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 231

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +     +G      +  +  E        D   ++  L   G+  L 
Sbjct: 8   LVVEDEPKIAQILVDFLSLEGFLTHVVHDGDEAEAAIKQVNPDCVILDLMLP--GKDGLS 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + +R  S VP+I ++        L     G DD V KP   RE++ARV A+ RR    
Sbjct: 66  ICKDVRKFSHVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQALLRRAALG 125

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K + N      IR+ ++  +  + G +  L   E R+L+ L+   G   ++  +  
Sbjct: 126 APAEKTAPNILTFKHIRIDTERFECTINGSIIELTPVEFRLLKTLLGKPGTVFSREILMQ 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
             Y      V    ++SH+  LR K+       P+  S   +GY +
Sbjct: 186 RCY-EDARIVSNRTIDSHMKNLRNKISLVDDPQPILQSVYGVGYKL 230


>gi|322834357|ref|YP_004214384.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321169558|gb|ADW75257.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 228

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ DG  A     G +L+ F      +    SA  D   ++  L   G   +
Sbjct: 3   ILLIEDDKMIGDGIKAGLAKLGFTLDWFTDGLTGKAALDSAPYDAVILDLSLP--GMDGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           +L R  R A    P++ ++   +L+  +    +G DD + KP    E+ AR+ A+  RR 
Sbjct: 61  QLLREWRKAGRDTPVLILTARDALEQRVGGLQAGADDYLCKPFALVEVAARLQALIRRRH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V   +   G +      R   + GE   L  RE  +LE  + N+G+ +A+T I   +Y 
Sbjct: 121 GVITPKVTHGAVEFDPAARSVTLNGEAVTLTPREVTVLELFLRNKGRVLARTLIQEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE V  N VE HI  LR KL    G   + +   +GY++
Sbjct: 181 WEDE-VSSNAVEVHIHHLRSKL----GKGFIRTVHGVGYTL 216


>gi|315634592|ref|ZP_07889876.1| two component response regulator [Aggregatibacter segnis ATCC
           33393]
 gi|315476540|gb|EFU67288.1| two component response regulator [Aggregatibacter segnis ATCC
           33393]
          Length = 223

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D AL+ +G        G +++ F   +       +A  D   ++  L       L
Sbjct: 3   ILLIEDDALIGNGIQIGLTKSGFAVDWFTDGKSGLAAAQAAPYDAVVLDLTLP--KMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           ++ +  R +   VP++ ++   +L   +     G DD + KP    E++AR+ A+  RR 
Sbjct: 61  DVLQAWRKNGQDVPVLILTARDTLDERITGLQRGADDYLCKPFALVEVVARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   +   ++   + R   +  +   L  RE ++LE  M N+ + + +  I   +Y 
Sbjct: 121 GHASPIIQHSCVKFDPNQRKVLLNEQEIALTTREYKLLELFMLNKERVLTRDFIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 181 -WDDEVNSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219


>gi|307154473|ref|YP_003889857.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984701|gb|ADN16582.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 234

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 24/237 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   +          +  +      G  +LEF   LQ     DV  ++  L    
Sbjct: 3   ILIVEDEPEIAQLIRETLERENFTCHIARTGLQALEFFGQLQ----PDVIVLDIMLPE-- 56

Query: 58  EKVLELPRIIRAHSQV--P-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              LE+   IR       P ++ ++        +    +G DD + KP    E++ARV A
Sbjct: 57  LDGLEVCTRIRQKPGTKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRA 116

Query: 115 IYRRL----KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRG 165
           + RR        N    T    V  D      Q      E+  L   E  +L   M+  G
Sbjct: 117 LLRRSLRHGGQPNQVYRTNHFSVDLDQHLATRQLDNEESELLDLTTLEFNLLSTFMSYPG 176

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++TQ+   ++G  D   +E VV++HI +LRKK+  +      + +   +GY  +
Sbjct: 177 RVWSRTQLIDKLWGN-DFFGDERVVDTHIRRLRKKIEPDPANPSFIKTVIGVGYKFE 232


>gi|192359014|ref|YP_001981290.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190685179|gb|ACE82857.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 227

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++   +L   +  + +         +L      D++ I+  L        
Sbjct: 3   LLVVEDEQSLREQIASLVAAEKYACDTAADGRDGLFLGCEYDYDLAIIDLGLPL--MDGT 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA     P++ ++   + Q  +   ++G DD + KP H  E+ AR+ A+ RR  
Sbjct: 61  TVIRELRAKGRNFPILILTARGNWQDKVQGLEAGADDYLTKPFHPEELKARIHALLRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++++   GPI + +  +     G    L   E   L YL  + GK ++K ++   +Y 
Sbjct: 121 GHASSQLNYGPITIDTSAKRVYRDGAEVELTGFEYNTLTYLAMHPGKNISKLELTEHLYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + NV+E  + +LRKKL      + + ++R LGY  +
Sbjct: 181 Q-DYDRDSNVIEVFVGRLRKKLDPDGSLNLISTQRGLGYRFN 221


>gi|206978118|ref|ZP_03239001.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962156|ref|YP_002340726.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141404|ref|ZP_04269942.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
 gi|229198829|ref|ZP_04325523.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
 gi|206743654|gb|EDZ55078.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068304|gb|ACJ82554.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228584665|gb|EEK42789.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
 gi|228642185|gb|EEK98478.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
 gi|324328564|gb|ADY23824.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|154686246|ref|YP_001421407.1| YvrH [Bacillus amyloliquefaciens FZB42]
 gi|42491108|emb|CAE11245.1| YvrH protein [Bacillus amyloliquefaciens FZB42]
 gi|154352097|gb|ABS74176.1| YvrH [Bacillus amyloliquefaciens FZB42]
          Length = 267

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   + +    +   +G+  +   ++             D+  ++  L     +  
Sbjct: 41  LIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPD--GEGY 98

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR  S VP+I +S        +     G DD + KP   +E+  RV A  RR+  
Sbjct: 99  DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 158

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +    + GP  +     +         L  +E  ++ Y + +  + ++K  ++ A
Sbjct: 159 LQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETLYQA 218

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G  D    +N V  HI +LR+K+ N     D + + + LGY  
Sbjct: 219 VWGE-DFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKF 262


>gi|116622737|ref|YP_824893.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225899|gb|ABJ84608.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 250

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +       F   G  +E  +              D+  ++  L        
Sbjct: 27  ILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPV--LDGF 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S  P+I ++   S    +   +SG DD + KP    E+LAR+ A+ RR   
Sbjct: 85  EVLRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRTGH 144

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       E+  +R+    R     GE   +   E  ILE L+ + G+ V + ++ + +
Sbjct: 145 TDAAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDELTAVL 204

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y        E  ++ HIS LRKKL        + + R +GY  
Sbjct: 205 YQRP-ATPYERSLDVHISHLRKKLERD-DRSVIRTIRGVGYQF 245


>gi|325284509|ref|YP_004257048.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324316683|gb|ADY27794.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A    +G ++   ++ +     +   R D++ I+  L   G   ++
Sbjct: 5   LIVDDDPAILEILQAYLVAEGHTV--LSASDGFGAREGLPRADLAIIDWMLP--GVSGMD 60

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R  RA   Q+P++ ++     +  L   D GVDD V KP   RE++ARV A+ RR+ V
Sbjct: 61  LVREARAADMQLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVMARVRALLRRVGV 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +        + G    L + E  +L  L  + G    + ++   ++G  
Sbjct: 121 -REEVSIGDLSIDLRSHTASLSGLPLELSKLEFDLLTALAQHPGMAWTRERLLERVWG-S 178

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           D    E VV+ HI+ LRKKL +       +++ R +GY  
Sbjct: 179 DFLGTERVVDVHITGLRKKLGDTSDNPQFIETVRGVGYRF 218


>gi|307293225|ref|ZP_07573071.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306881291|gb|EFN12507.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 221

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++  +  E   +L ++   D   ++  L       L
Sbjct: 3   LLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDGHFLGATENYDAVVLDLGLPT--IDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R  +     P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +      ++GE   L  +E ++L YL+ ++GK V++T++   IY 
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G D + + R LGYS+D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GADVITTIRGLGYSLD 217


>gi|282849614|ref|ZP_06258998.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
 gi|282580551|gb|EFB85950.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
          Length = 224

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 105/223 (47%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIA-LFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L++D  ++ +G  A     + ++++  FN  +  +++ +S+  DV  ++  +      
Sbjct: 3   ILLVEDEEML-NGITAKYLRAENMTVDTCFNGQQAIDYVNTSS-YDVIVMDIMMPI--LD 58

Query: 60  VLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +     +R      P++ ++   SLQ  +   ++G DD + KP    E+ AR+ A+ RR
Sbjct: 59  GISALAQMRNDGNTTPVLLLTAKNSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARR 118

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + N    GP+ +    R  +  GE   L  +E  +L YL +N    +++ QI   +
Sbjct: 119 NARHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     N+++ +I  LRKK+        + + R +GY +
Sbjct: 179 W-EYDYESYSNLIDVYIKDLRKKIDTDENVKLIQTVRGVGYVL 220


>gi|253580747|ref|ZP_04858011.1| two-component system response regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848118|gb|EES76084.1| two-component system response regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 224

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 98/218 (44%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G    F  DG  +    +   ++ LQ  A      +            
Sbjct: 6   ILIVEDDVDLREGLSFSFSGDGYDVT--ETGTKKDGLQEIANGGYDIVFLDCNLPDGTGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +R++S +P+I ++   +    +   + GV+D ++KP     + AR+  I  + K 
Sbjct: 64  ELCKEVRSYSNIPIIMLTARDTEMDEIKALELGVNDYLSKPFSLGVLKARMKRIL-QEKS 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + +  TG + +         +G    L + E R+L YL+ N+   ++K QI   I+   
Sbjct: 123 ESTKIVTGSLSIDQSTCKVYKRGSEISLSKLEYRLLVYLIENKNHILSKEQILEKIWDSD 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            + V+ N V  +IS+LR K+ + +     + +   +GY
Sbjct: 183 GKYVDNNTVSVNISRLRTKIEDDVSKPKWIQTVHGIGY 220


>gi|237786491|ref|YP_002907196.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759403|gb|ACR18653.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 268

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPE--LDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 265


>gi|224825947|ref|ZP_03699050.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224601584|gb|EEG07764.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 241

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 101/230 (43%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D  +   G  G +++        +   +  R D+  ++  +   GE  L
Sbjct: 6   ILVVDDDAKLRDLLVRYLGQQGYTVDTLPDARELQRKLARNRPDLMVLDVMMP--GEDGL 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA  + VP+I ++        +   + G DD + KP + RE++AR+ ++ RR  
Sbjct: 64  AVVRRLRAQGEMVPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELVARIQSVLRRHN 123

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +          +  E GP  +    R+   Q +V  L   E  +L  L ++  + + + 
Sbjct: 124 ATPALAARHEEGDAIEFGPFTLHLGRRELTHQDKVVTLTSAEYAVLAVLASHPRRPMTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           Q+     G  +    +  ++ HIS+LR+ L  ++ G   + +    GY  
Sbjct: 184 QLMEMALGKGNGESLDRSIDVHISRLRRALDTDEGGPRYIQTVWGYGYVF 233


>gi|306823058|ref|ZP_07456434.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801315|ref|ZP_07695444.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553690|gb|EFM41601.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308222204|gb|EFO78487.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 240

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 86/228 (37%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +    +         +  R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIMLPV--MDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR+  +
Sbjct: 74  ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 123 ---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        + G + +    R   V GE   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKILDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GSQTIRTVHGVGYAFE 236


>gi|299134457|ref|ZP_07027650.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591204|gb|EFI51406.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 220

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ +G     G  G +L+  ++        + +  D   ++  L       L
Sbjct: 3   ILIVEDDPVISNGLKVGLGMFGATLDVVSTCADGRAAAALSEFDALVLDVMLPD--GSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L   +RA     P++ ++    +   +   DSG DD + KP    E+ ARV AI RR  
Sbjct: 61  DLLTELRAGGDRTPVLMLTALDEIADRIKGLDSGADDYIGKPFDLDELAARVRAICRRQT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++       + +        V  E  PL RRE  IL  LM++ G+ ++K +I S +YG
Sbjct: 121 GRASPCLTFNGLTLDPAQMTVTVNDETNPLSRREFSILSALMSHPGRVMSKNEIESRLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N VE HI     KLR K+G + +++ R +GY +
Sbjct: 181 -WQEEIESNTVEVHIH----KLRTKVGREKIETIRGIGYRM 216


>gi|90023343|ref|YP_529170.1| two component transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952943|gb|ABD82958.1| two component transcriptional regulator, winged helix family
           [Saccharophagus degradans 2-40]
          Length = 232

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +              +   +       L ++   D+  ++  L       L
Sbjct: 5   ILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPS--MDGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA +   P++ ++   S    +   ++G DD + KP   RE+ ARV A  RR  
Sbjct: 63  QVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTD 122

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +S        ++    G + +    R   +  +   L  +E  +L Y+ ++ G+  ++ +
Sbjct: 123 MSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREK 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  A++G +  +  E+ V SHI++LR KL  +      V +   +GY  
Sbjct: 183 LLDAVWG-YQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230


>gi|30264882|ref|NP_847259.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530368|ref|YP_021717.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187698|ref|YP_030951.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65322181|ref|ZP_00395140.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869682|ref|ZP_02214340.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167633982|ref|ZP_02392305.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638026|ref|ZP_02396304.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685995|ref|ZP_02877218.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705430|ref|ZP_02895894.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651313|ref|ZP_02934144.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567181|ref|ZP_03020096.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196032754|ref|ZP_03100167.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218906044|ref|YP_002453878.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227817609|ref|YP_002817618.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917471|ref|ZP_04081020.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929866|ref|ZP_04092881.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229604412|ref|YP_002869087.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687622|ref|ZP_05151478.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725188|ref|ZP_05186971.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736926|ref|ZP_05194632.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741961|ref|ZP_05199648.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754441|ref|ZP_05206476.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757274|ref|ZP_05209301.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259557|gb|AAP28745.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505516|gb|AAT34192.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181625|gb|AAT57001.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714511|gb|EDR20030.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513843|gb|EDR89211.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530783|gb|EDR93485.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129555|gb|EDS98418.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670459|gb|EDT21199.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083139|gb|EDT68201.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561685|gb|EDV15655.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994183|gb|EDX58138.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218538505|gb|ACK90903.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227006263|gb|ACP16006.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228829782|gb|EEM75404.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842143|gb|EEM87242.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268820|gb|ACQ50457.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL Y M N G  + + Q+ 
Sbjct: 123 TKQLLENEDDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNPGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|297624706|ref|YP_003706140.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297165886|gb|ADI15597.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 223

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 95/219 (43%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  +    +             D+  ++  L        
Sbjct: 7   ILIVEDDLDISRLLTLELEEAGFRVTACETGMRGLAAVRELNPDLIVLDLGLPD--LSGA 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S  P+I ++    + T ++  ++G DD + KP H  E+LAR+     R + 
Sbjct: 65  EIARRVRKTSSTPIIILTAADDVATKVEMLNAGADDYLAKPFHTEELLARIRVQL-RHQN 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +    G + +  + R      +   L  RE  +L YL  + G+   + +I   ++G  
Sbjct: 124 AGSAQTVGDMVIDINRRQLYWDKQEIRLSPREFDLLVYLCGSPGRVYTRQEIEQNVWGE- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ HI+ +R KLR+  G+  + + R +GY+I
Sbjct: 183 ELPPSSNVVDVHIANIRAKLRDAGGYGLIRTVRGIGYAI 221


>gi|153955166|ref|YP_001395931.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146348024|gb|EDK34560.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 225

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +++    +  +DG S+  F ++   + LQ    E +      ++       E
Sbjct: 5   LVIDDDGYIRELICTVLKNDGFSV--FEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
             + +R +   +P++ ++    L   +  F+ G DD + KP    E+L R+ A+ RR K 
Sbjct: 63  FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRRYKV 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++     G + +           E + +P +E  +L  L +  GK +++ ++   ++GL
Sbjct: 123 VASQTINIGNLAMDKSRYTVISNNENYDIPMKEFELLFMLGSYHGKTLSRNRLIEEVWGL 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D    E  ++ HI++LR++  + +    + + R LGY ++
Sbjct: 183 -DFEGNERTLDVHINRLRERFPSHVYKFKITTIRGLGYRLE 222


>gi|28379053|ref|NP_785945.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254557185|ref|YP_003063602.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308181246|ref|YP_003925374.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271891|emb|CAD64796.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254046112|gb|ACT62905.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308046737|gb|ADN99280.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 242

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 103/239 (43%), Gaps = 25/239 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDD----GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   V +     F  +      + +G  ++E   + +     D+  ++  L   G
Sbjct: 3   LLMIEDNKSVSEMMAMFFKKEKWDAHFAYDGNEAVEM--FNEDVDGWDMVTLDLNLP--G 58

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           +  +++   IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++
Sbjct: 59  KDGMQVSADIRKASPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALH 118

Query: 117 RRLKVSNNR-------------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMA 162
           RR  ++                 +T   ++ +  R+  +  +    L  +E  +L+ L  
Sbjct: 119 RRADLAKTTPADQPASTVSSFDVQTDHFKLNTKTREAYLADKQIQDLTPKEFDLLKTLAQ 178

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K G   + +   +GY  D
Sbjct: 179 KPRQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KAGPQIIQTVWGVGYKFD 235


>gi|228967929|ref|ZP_04128940.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791796|gb|EEM39387.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 229

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I+V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIQVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|226943977|ref|YP_002799050.1| Response regulator, two-component [Azotobacter vinelandii DJ]
 gi|226718904|gb|ACO78075.1| Response regulator, two-component [Azotobacter vinelandii DJ]
          Length = 219

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +G       +G +++                 D+  ++  L       L
Sbjct: 3   ILLVEDDAALGEGIRTALKPEGYTVDWLQDGASALHALGCESFDLCVLDLGLPR--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R +RA    +P++ ++   +    +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRRLRAAGNPLPVLVLTARDATSERIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   I++    +    QG    L R+E  +L  L+A  G+ + + ++  A+YG
Sbjct: 121 NRPQPALEYRGIQLDPQSQAVSYQGRDITLARKEFLLLHELLAQPGRVLTRDRLQQALYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E VE N +E H+  LR+K       + + + R +GY +D
Sbjct: 181 -WSEEVESNALEVHVHHLRRK----FFPELIRTVRGVGYMVD 217


>gi|264676158|ref|YP_003276064.1| two component transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|299531179|ref|ZP_07044591.1| two component transcriptional regulator [Comamonas testosteroni
           S44]
 gi|262206670|gb|ACY30768.1| two component transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|298720882|gb|EFI61827.1| two component transcriptional regulator [Comamonas testosteroni
           S44]
          Length = 234

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++I+D AL            G  +                  DV  ++  L   G   L
Sbjct: 4   YLIIEDDALNARYIAEGLRQQGAHVSVCGDGVQGIAQAVGENWDVIILDRMLP-NGFDGL 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R+   Q P++ +S   +    +    +G DD + KP    E+ AR+ A+ RR +
Sbjct: 63  QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 122

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +       +   +RV    R  E  G+   L  RE R+L +LM +  + V +T +  +++
Sbjct: 123 IPAPTREMQVADLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R +GYS+
Sbjct: 183 D-YRFDPQTNVIDVHISRLRSKVDKGFATPLIHTVRGVGYSL 223


>gi|240146170|ref|ZP_04744771.1| transcriptional activator protein Irlr [Roseburia intestinalis
           L1-82]
 gi|257201702|gb|EEU99986.1| transcriptional activator protein Irlr [Roseburia intestinalis
           L1-82]
          Length = 224

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L +D   +    +    +DG S++          + S    D   ++  +        
Sbjct: 3   IFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIMMPKA--DGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119
            + R +R      P++ ++   ++   +   DSG +D + KP    E+ AR+ A+ R   
Sbjct: 61  TVLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEELSARLRAMMRGSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V++N      + +          G+   L  +E  +LEY M N+G+ +++  I   ++ 
Sbjct: 121 GVTDNVLHIADLSLDCTSHRVMRGGKEITLSAKEYAMLEYFMYNQGRVLSREMIEDHVWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
            FD     NVV+ +IS LRKK+        + + R  G
Sbjct: 181 -FDYEGGTNVVDVYISYLRKKIDGGYDKKLIHTVRGRG 217


>gi|212716132|ref|ZP_03324260.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661499|gb|EEB22074.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
           16992]
          Length = 242

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +    +         ++ R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAAATLRPDLVIMDIMLPV--MDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
             + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR    
Sbjct: 74  ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 119 ---LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               K S N    + G + +    R   V G+   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGKQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GSKTIRTVHGVGYAFE 236


>gi|323466878|gb|ADX70565.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus helveticus H10]
          Length = 240

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 111/237 (46%), Gaps = 23/237 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   V +     F  +G    ++++G  +++   + +++ + D+  ++  L  K 
Sbjct: 5   ILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDM--FKENADKYDLITLDLNLPKK- 61

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++
Sbjct: 62  -DGIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALH 120

Query: 117 RRLKVSNN-----------RAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANR 164
           RR+ +  +             +T  +++  D R+     +    L  +E  +L  +    
Sbjct: 121 RRVMMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQPVVDLTPKEFDLLYTMAQKP 180

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 181 KQVFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|307154447|ref|YP_003889831.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984675|gb|ADN16556.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   + +       D    ++  F+  +  +++QS +  D+  ++  L       
Sbjct: 3   ILLVEDDERIANALAETLKDRQYLVDLAFDGEKGWDFIQSFS-YDLIILDVMLP--KLSG 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             L + +R      P++ ++   + +  +   D+G DD V KP    E+ AR+ A+ RR 
Sbjct: 60  TALCQRLRDTGYMTPVLMLTARDTSRDKVKGLDAGADDYVVKPFDLPELAARIRALLRRS 119

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +     E   +R+  +  +    G    L  +E ++LE  + N    ++++QI   ++
Sbjct: 120 NTTLPPVLEWENLRLNPNSCEVNYAGHPLHLTPKEYKLLELFLRNTHLVLSRSQILDHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              D   EE  V+ HI +LRKKL+      D +++   LGY +
Sbjct: 180 SFEDPPSEE-AVKVHIKELRKKLKAVGASPDLIETVYGLGYRL 221


>gi|257465004|ref|ZP_05629375.1| transcriptional regulatory protein [Actinobacillus minor 202]
 gi|257450664|gb|EEV24707.1| transcriptional regulatory protein [Actinobacillus minor 202]
          Length = 221

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G          +++ F   +       SA  D   ++  L       L
Sbjct: 3   ILLIEDDKLIGEGIKLGLTKQNFAVDWFTDGKLGFDALFSAEYDAVILDLSLPR--MDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +  R  +  +P++ ++   +L   +  F++G DD + KP    E++ R+ A+ RR  
Sbjct: 61  DILKQWRKENNHIPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRRSH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++    G + + S  R   + GE   L  +E R+LE    ++ + + ++ I   +Y 
Sbjct: 121 QQVSSEIVIGDLVIDSHTRRVTLNGEDISLTAKEFRLLELFAHHKDRVLPRSLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  V  N +E +I  LRKKL    G   V +   +GY +
Sbjct: 180 SWDNEVSSNALEVYIHNLRKKL----GKSWVKTVHGVGYKL 216


>gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 249

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 105/234 (44%), Gaps = 23/234 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD A ++          G     + +G  +LE  E      + D+  ++  +    
Sbjct: 7   ILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEA----EKPDLIVLDVMMPR-- 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              L++ + +R  + VP+I ++    +   +   + G DD + KP   +E+ +R+ AI R
Sbjct: 61  MNGLQVCQTLRESTGVPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILR 120

Query: 118 RLKVSNNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           R      +A           E GP+R+ +  R   + G+   L   E  +L+ L++  G+
Sbjct: 121 RTVPGKGKAGAGHAAEQVIMEIGPLRIETHKRQVYLHGQRIQLTGIEFDVLKLLVSKAGQ 180

Query: 167 RVAKTQIFSAIYGLF-DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            V+++ I   ++G   +   +  VV+ ++S+LR K+ +     + + +   +GY
Sbjct: 181 TVSRSDILQQVWGYSANHYADLRVVDVNVSRLRSKIGDSSKQPEYIHTDWGIGY 234


>gi|254421179|ref|ZP_05034897.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188668|gb|EDX83632.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 242

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 101/228 (44%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            +++DD A ++          G  +    + + EE L +      D+  ++  +      
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDV--VTAADGEEALDTFRNTIPDLVVLDVMMP--KLD 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+
Sbjct: 64  GYGVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRV 123

Query: 120 K-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +        S+       IR+ ++ R      E   L   E  +LE L++  G+  ++++
Sbjct: 124 EKTGASGIPSSGVITINNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSE 183

Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           I   ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 184 ILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|229088212|ref|ZP_04220152.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
 gi|228695108|gb|EEL48144.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
          Length = 232

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V D        +G  +      + +E ++    + +  +   ++       
Sbjct: 6   ILIADDEVEVADLIAIHLEKEGYHV--IKVADGKEAIRVIHSQPIDLVILDIMMPKMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IRA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRAQYHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLRRFLM 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++ + +    G + ++ + R   V  E   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKVEDNKSVLAIGGVVIYPEQRTVSVYEEQIELTPKEFDILYLLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   D     N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVW-AEDYYEGRNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|197119324|ref|YP_002139751.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197088684|gb|ACH39955.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 225

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D        +G      +            + D+  ++  L   G    E
Sbjct: 5   LVIEDEKDLADLVAFHLEQEGYCCLVAHDGATGLAEARRCKPDLILLDLMLP--GMMGTE 62

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++     + +P+I ++        +  F+ G DD V KP   RE++ RV A+ RR 
Sbjct: 63  VCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRK 122

Query: 120 KVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++  A    G + +  +     V GE   L   E ++L  L    G+  ++  +   +
Sbjct: 123 LPASEVATISLGALLIDVERHLVRVAGEEVQLTSTEFKLLMNLAERIGRVQSRELLLQNV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +    +   V++H+++LR KL      + + + R  GY ++ +
Sbjct: 183 WG-YSYLGDTRTVDTHMTRLRTKLGAAG--ELIKTVRGFGYKLEES 225


>gi|33355848|gb|AAQ16268.1| response regulator [Enterococcus faecalis]
 gi|77380195|gb|ABA71727.1| VanRG [Enterococcus faecalis]
          Length = 235

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 93/233 (39%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG  +  F +         S + D++ ++  L        
Sbjct: 5   ILIVDDEKEIADLIELYLKNDGYKVYKFYNGIDALKCVESEKMDLAILDVMLPDV--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP +  E+ ARV    RR   
Sbjct: 63  HICQKIRERYFYPIIMLTAKVEDADKIMGLTIGADDYITKPFNPLEVAARVKTQLRRYVC 122

Query: 122 SNNRA------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            NN A            +   + +  +     + G+   L   E  +L YL  NRGK ++
Sbjct: 123 YNNAADIEKENVLVTEYDINGLVINKNTHKCTLYGKAVTLTPIEFSVLWYLCENRGKVIS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++F  ++G        N V +HI +LR+KL+        + +   +GY+I+
Sbjct: 183 SEELFENVWGEK-FLDNNNTVMAHIGRLREKLKEPARNPKFIKTVWGVGYTIE 234


>gi|330831451|ref|YP_004394403.1| two-component system, regulatory protein [Aeromonas veronii B565]
 gi|328806587|gb|AEB51786.1| Two-component system, regulatory protein [Aeromonas veronii B565]
          Length = 218

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++           G   +  +      +L  +   D   ++  L   G   L
Sbjct: 3   ILIVEDEKILAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLP--GRDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +  R+     P++ ++    L   ++  ++G DD + KP    E++ARV A+ RR  
Sbjct: 61  SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++  E G +R+         +G    L   E R+L YLM +RGK V+++++   IY 
Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N VE  I ++RKK       D +++ R LGY I+
Sbjct: 181 Q-DFDRDSNTVEVFIGRIRKK----TNPDLIETVRGLGYRIN 217


>gi|307823236|ref|ZP_07653466.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307736011|gb|EFO06858.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 219

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 106/224 (47%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G +     +G +++   + +  +        ++  ++  L     + L
Sbjct: 3   LLLVEDDEILGEGLVEGLKMEGYAVDWLTNGKLADEALKINSYELIVLDLNLPD--MEGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R      P++ ++   ++   +   DSG DD V KP    E+ AR+ A+ RR +
Sbjct: 61  DILKALRTRKDETPVMVLTAKDTVPDRVLGLDSGADDFVIKPFELDEVCARLRALARRNE 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +           E   L ++E  IL +LM+N G+ +++ ++  ++Y 
Sbjct: 121 GRSVPNIEYKGIVLDPASHQVTWNDEKVDLSQKEFEILSFLMSNIGRVISRARLEESLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D  VE N VE HI  LRKKL   +    + + R +GY ID +
Sbjct: 180 SWDSDVESNTVEVHIHHLRKKLDPSI----IRTVRGVGYIIDED 219


>gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 248

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +    +           + D   ++  L         
Sbjct: 25  LVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAALSTARQFQPDAVVLDVMLPD--LDGFA 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R +R     VP++ ++   +++  +     G DD V KP    E++AR+ A+ RR   
Sbjct: 83  VLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 142

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +  D  +    G++  L   E  +L YLM N  + ++K QI   
Sbjct: 143 AIAARHEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQILDR 202

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 203 VWN-YDFGGQANVVELYISYLRKKI-DAGRAPMIHTLRGAGYVL 244


>gi|153811407|ref|ZP_01964075.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174]
 gi|149832534|gb|EDM87618.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174]
          Length = 232

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D       +D   +  + N +E  E +Q +   D++ ++  L       
Sbjct: 5   ILVVDDEKEIADLLEVYLKNDNYIVHKYYNGIEALECIQKT-EIDLAILDVMLPD--IDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + IR +   P+I ++        +     G DD + KP +  E++ARV    RR +
Sbjct: 62  FRICQKIRENYYFPVIMLTAKIDDGDKIMGLTIGADDYITKPFNPLEVIARVKTQLRRYQ 121

Query: 121 VSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             NN            +   + +  D     + G+   L   E  IL YL  ++GK V+ 
Sbjct: 122 KYNNPTKKQFFPKSEYDIRGLIINKDTHKCFLFGKEISLTPIEFSILWYLCEHQGKVVST 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            ++F  I+         N V +HI +LR+KL         + +   +GY I+
Sbjct: 182 EELFENIWKEK-YLDNNNTVMAHIGRLREKLNEPAKNPKFIKTVWGVGYEIE 232


>gi|317500916|ref|ZP_07959126.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089184|ref|ZP_08338087.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897619|gb|EFV19680.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405961|gb|EGG85487.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 224

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   +     A   D+  S++  F+  E EE+L ++ + D   ++  +  K    
Sbjct: 3   ILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYL-TAVKYDAVILDIMMPKK--DG 59

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + + +R      P+I ++   S++  +   D+G +D + KP    E+LARV  + R+ 
Sbjct: 60  LSVLKKMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKP 119

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +           + V  D        E   L  +E  +L Y++ N G  +++ ++   ++
Sbjct: 120 EEMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D     NV++ +I  LRKK+ +      + + R +GY +
Sbjct: 180 N-YDYMGSSNVIDVYIRYLRKKIDDGREKKLIHTVRGVGYVL 220


>gi|255526422|ref|ZP_05393334.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186394|ref|ZP_06854797.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509866|gb|EET86194.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048841|gb|EFG88272.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 223

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++   A   D    ++  N           +  D+  ++  L        
Sbjct: 4   ILVVEDEIDIQNIIKAFLEDACYEVDTSNDGIEGFEKFKLSTYDLIILDIMLP--KISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +  +IR  S VP+I ++     Q  +  FD   DD ++KP   + +L RV A+ RR   
Sbjct: 62  AVCEMIRKESHVPIIILTALDDDQNQIKGFDLMADDYISKPFSPQILLKRVEAVLRRFNE 121

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S     N       I++  +     V  +   L  +E  +L  L+ N+G  + +  I + 
Sbjct: 122 SFANLDNTVVAYKDIKLDKNAAKAFVASKELELTAKEFELLNMLIENKGIVLTREVILNK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G +D   +E VV++HI  LR+KL    G D + + R +GY ++ N
Sbjct: 182 LWG-YDFYGDERVVDTHIKNLRRKL----GVDYIQTIRKVGYKLEGN 223


>gi|220913188|ref|YP_002488497.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219860066|gb|ACL40408.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 224

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS----LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   + +    +  +DG       +G  +L+    +  S+R D+  ++  L   G
Sbjct: 5   ILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALD----IFRSSRPDLVLLDLMLP--G 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +E+ R +RA S VP++ ++        +   +SG DD V KP    E++ARV A  R
Sbjct: 59  VDGIEVCRQVRAESDVPIVMLTAKADTSDVVRGLESGADDYVPKPFKPAELVARVRARLR 118

Query: 118 RL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +        I +   G       E   L   E  +L  L     +   +  +   
Sbjct: 119 PGDQKAPETLRIADITIDVAGHTVSRGSERISLTPLEFDLLVALARKPWQVFTRELLLEQ 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           ++G +  A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 179 VWG-YRHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGYK 221


>gi|332296828|ref|YP_004438750.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332179931|gb|AEE15619.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 248

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 92/238 (38%), Gaps = 22/238 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G S+    +      +  S   D+  ++  L        
Sbjct: 3   ILVVDDEMPILELVSYNLQKEGFSVVTAENGTKALQIARSEHPDLIILDLMLPD--MSGF 60

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ RI+R       +P++  +        +   + G DD V KP   + ++ARV  I RR
Sbjct: 61  DICRILRNDKTTAVIPIVMATAKTEDTDVVSGLELGADDYVTKPFSPKVLVARVKNILRR 120

Query: 119 LKVSN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            + +                    + +  +  +  V G+       E  IL +L  N G+
Sbjct: 121 AQEAKPADTAASPFDRLQTVSRHFLVIKPEKFEVTVSGKQVQFSATEFAILLHLAQNPGR 180

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD----PVDSKRFLGYSI 220
             ++ QI +AI G     V E  ++  I  +RKKL    G D     +++ R +GY +
Sbjct: 181 VFSRQQIINAIKGDS-YPVTERSIDVQILSIRKKLSEAAGNDSAQNIIETVRGVGYRM 237


>gi|187928843|ref|YP_001899330.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725733|gb|ACD26898.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 225

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 95/220 (43%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     +       + G  ++  N+      +      DV  ++  L   G     
Sbjct: 4   LVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLP--GMDGWT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           + + IR+ S+ P++ ++    +   +  F+ G DD + KP    E+LAR+    R+    
Sbjct: 62  VIKSIRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSTSK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + R     + +   GR          L  +E  +L  LM  RG+ +++T I S ++ + 
Sbjct: 122 ESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSMLHLLMRRRGEVLSRTTIASQVWDV- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 NFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLD 220


>gi|228923572|ref|ZP_04086852.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836041|gb|EEM81402.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 229

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L    +E V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVIFEQEKVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|213691593|ref|YP_002322179.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523054|gb|ACJ51801.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457681|dbj|BAJ68302.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 243

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+      D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238


>gi|94972307|ref|YP_594347.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554358|gb|ABF44273.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 248

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A V+D       + G  +   ++ +         R D+  ++  +   G   LE
Sbjct: 26  LIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMP--GMDGLE 83

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
             R  RA  QVP+I ++   +    +   + G DD V KP    E+LARV A  RR    
Sbjct: 84  FLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSSEP 143

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N     G + +    R   V+GE   L R E  ++   +   G+   + ++       
Sbjct: 144 LPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQ--LQ 201

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            +    E  ++ H+  LR K+  + G    +++   +GY ++
Sbjct: 202 EEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLN 243


>gi|313115387|ref|ZP_07800858.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622301|gb|EFQ05785.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 233

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    ++  S I   ++       +
Sbjct: 5   LIIDDDKKLCALMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTCSLIILDVMMPDMNGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR  + VP++ ++     +  +     G DD + KP    E++ARV ++ RR    
Sbjct: 65  VLQKIREKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYTTL 124

Query: 121 --VSNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             V+ N A T     + +    R   VQ     L  +E  +L +L +N+G+   K Q+++
Sbjct: 125 NPVTGNEAATMLLKDMVIDKINRTVTVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQLYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            ++   +   ++N + + ISKLRKK+         + + R +GY  +
Sbjct: 185 QVW-TEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFN 230


>gi|238757565|ref|ZP_04618750.1| Transcriptional regulatory protein basR/pmrA [Yersinia aldovae ATCC
           35236]
 gi|238704327|gb|EEP96859.1| Transcriptional regulatory protein basR/pmrA [Yersinia aldovae ATCC
           35236]
          Length = 220

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +G + +   +      L  +++  +  ++  L  +   VL
Sbjct: 3   LLIVEDDELLQRGVAMALTSEGYACDCAGTAAQAHSLLQTSQYSMVILDLGLPDQDGTVL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L +  R    +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR + 
Sbjct: 63  -LRQWRRQQVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQG 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  E   + +    +   +QG+   +  +E  IL  L+   G+ + +  +   +Y  
Sbjct: 122 LSDNLVEQDDLSLNLSSQQVCLQGQPIEITPKEFAILSRLIMRAGQTINRELLQQDLYTW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 182 NDDLG-SNTLEVHIHNLRRKL----GKDRIRTIRGIGYRLE 217


>gi|317493676|ref|ZP_07952097.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918619|gb|EFV39957.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 220

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G S++ F   +       SA  D   ++  L   G   L+
Sbjct: 4   LLIEDDKLIGDGIKAGLIKMGFSVDWFTEGKQGLNALDSAPYDAVVLDLSLP--GMDGLD 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R  R +    P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  ILRKWRQNGHDEPVLILTARDALEQRVAGLQQGADDYLCKPFALIEVAARLQALIRRRHG 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   GP+ +         +GE   L  +E  +LE L+ N G+ + +  I   IY  
Sbjct: 122 QVQTTLTHGPVSLDPINLTVTHEGEAIYLKPKEFALLELLLRNEGRVLPRPLIEEKIYN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D+ V  N +E HI  LRKK     G   + +   +GY++
Sbjct: 181 WDDDVSSNAIEVHIHHLRKK----FGSSFIRTVHGIGYTL 216


>gi|225351867|ref|ZP_03742890.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157114|gb|EEG70453.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 242

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +    +         ++ R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATTLRPDLVIMDIMLPV--MDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
             + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR    
Sbjct: 74  ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 119 ---LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               K S N    + G + +    R   V G+   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGKQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GSKTIRTVHGVGYAFE 236


>gi|83745654|ref|ZP_00942712.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551]
 gi|83727731|gb|EAP74851.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551]
          Length = 245

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +               E  +              ++  ++  L   G+  
Sbjct: 27  MILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLP--GKDG 84

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S +P++ ++        L   + G DD + KP   RE++AR+  I RR++
Sbjct: 85  LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRRVQ 144

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E+  + + +      ++G+   L   E R+L  L    G+ +++  +   IY  
Sbjct: 145 RGGAQPES-LLLIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 203

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 204 H-RIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 244


>gi|42519762|ref|NP_965692.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116630289|ref|YP_815511.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|227889299|ref|ZP_04007104.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238853710|ref|ZP_04644077.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|268320126|ref|YP_003293782.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300362908|ref|ZP_07059078.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|41584052|gb|AAS09658.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116095871|gb|ABJ61023.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|227850101|gb|EEJ60187.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238833646|gb|EEQ25916.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|262398501|emb|CAX67515.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300352958|gb|EFJ68836.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|329668013|gb|AEB93961.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 228

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  ++  E    L ++    +  ++  +       
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQ--MSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S++P++ +S   S    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  IEVIKEVRKDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+V  L   E  IL  L ++  +  +  +IF
Sbjct: 121 KEVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYMLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|294012297|ref|YP_003545757.1| OmpR-family two-component system response regulator PhoP
           [Sphingobium japonicum UT26S]
 gi|292675627|dbj|BAI97145.1| OmpR-family two-component system response regulator PhoP
           [Sphingobium japonicum UT26S]
          Length = 221

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++  +  E   +L ++   D   ++  L       L
Sbjct: 3   LLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDGHFLGATESYDAVVLDLGLPT--IDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R  +     P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G +R+ +      ++GE   L  +E ++L YL+ ++GK V++T++   IY 
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G D + + R LGYS+D
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GADVITTIRGLGYSLD 217


>gi|226315244|ref|YP_002775140.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098194|dbj|BAH46636.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 230

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++ +++  F +   +E L    RED+  I   ++      + 
Sbjct: 7   LVVDDEEEIRDAIEIYLKNESMTV--FKASNGQEALDVLEREDIQLILMDIMMPKMDGMT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFQIRQKKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRFTNL 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +++ +  +   + +    ++  + G    L   E +ILE LM N+G+  +  +I+  
Sbjct: 125 GSAQITEDEIQVRGLTLNKSTKNVAIDGNEVRLTATEYKILELLMENKGRVFSIEEIYER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++        EN V  H+ ++R+K+  N      +     +GY I+
Sbjct: 185 VW-REPYMNAENTVAVHVRRIREKIEINPKEPKYLKVVWGIGYKIE 229


>gi|212704970|ref|ZP_03313098.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
 gi|212671634|gb|EEB32117.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
          Length = 224

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +G ++           + +S   D+  ++  L   G    
Sbjct: 4   ILVIEDENDIRQLLRFNLEREGFAVLEAADGLGGLHMATSELPDLVVLDLMLP--GMDGC 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R ++A      +P++ ++        +     G DD V KP   RE++ R+ AI RR
Sbjct: 62  DVCRRLKAQPVTAAIPVLMLTARGEEVDRIVGLTLGADDYVVKPFSVRELVLRIRAILRR 121

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +  +     + G+   L   E R+LE LM + G    + Q+ +A
Sbjct: 122 GSRPGMGTALCRGALLLDVEAHRVTLDGQEVALTATEFRLLEDLMRHAGAVRTREQLLNA 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +        V++H+ +LR KL  +     +++ R +GY +
Sbjct: 182 VWG-YSFEGYARTVDTHVRRLRAKLGEEAAA--LETVRGVGYRL 222


>gi|238919096|ref|YP_002932610.1| DNA-binding transcriptional regulator BaeR [Edwardsiella ictaluri
           93-146]
 gi|238868664|gb|ACR68375.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 243

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    I      G      +    +E L        + I   L+  G   L 
Sbjct: 19  LIVEDEPKLGQLLIDYLIAAGYRPHWLS--RGDEVLPYLQEHLCNLILLDLMLPGVDGLT 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR  + 
Sbjct: 77  LCREIRRTSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCMLQ 136

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +  +E  P+ +         + ++  L + E R+L+ L    G   ++ Q+ + +Y  + 
Sbjct: 137 DTLSEPTPLLIDESRFQASYRQQLLDLTQAEFRLLKTLATQPGCVFSREQLLNHLYDDY- 195

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             V +  V+SHI  LR+KL    G +P + S   +GY  +
Sbjct: 196 RVVTDRTVDSHIKNLRRKLEPVEGDEPLIRSVYGVGYRWE 235


>gi|153815974|ref|ZP_01968642.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756]
 gi|145846621|gb|EDK23539.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756]
          Length = 224

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   +     A   D+  S++  F+  E EE+L ++ + D   ++  +  K    
Sbjct: 3   ILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYL-TAVKYDAVILDIMMPKK--DG 59

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + + +R      P+I ++   S++  +   D+G +D + KP    E+LARV  + R+ 
Sbjct: 60  LSVLKEMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKP 119

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +           + V  D        E   L  +E  +L Y++ N G  +++ ++   ++
Sbjct: 120 EEMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D     NV++ +I  LRKK+ +      + + R +GY +
Sbjct: 180 N-YDYMGSSNVIDVYIRYLRKKIDDGREKKLIHTVRGVGYVL 220


>gi|189438905|ref|YP_001953986.1| response regulator [Bifidobacterium longum DJO10A]
 gi|296454575|ref|YP_003661718.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|32700051|gb|AAP86676.1| response regulator [Bifidobacterium longum subsp. infantis]
 gi|189427340|gb|ACD97488.1| Response regulator [Bifidobacterium longum DJO10A]
 gi|296184006|gb|ADH00888.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 240

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 99/236 (41%), Gaps = 21/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
             ++DD   + +    +  ++G  ++   + L   E      + D+  ++  L   G   
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIV-KPDLILLDVMLP--GLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IRA S VP+I ++        +   ++G DD V KP    E+LAR+ A +R  K
Sbjct: 61  TEVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAK 120

Query: 121 VSN---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
            +                N  E GPI +          G+   L   E  +L  L A  G
Sbjct: 121 PAAEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAG 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           + ++++ +   ++G ++ + +  +V  H+ +LR K+ +      +  + R +GY  
Sbjct: 181 EAISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235


>gi|15602079|ref|NP_245151.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720438|gb|AAK02298.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 223

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D AL+ +G        G  ++ F   +       SA  D   ++  L       L
Sbjct: 3   ILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLDLTLP--KMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           ++ +  R     VP++ ++   +L   +     G DD + KP    E++AR+ A+  RR 
Sbjct: 61  DILQRWRKEKYDVPVLILTARDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   E   +    + R   ++ E   L  RE ++LE  M N+ + +++  I   +Y 
Sbjct: 121 GQASPVIEHSLVCFDPNQRKVFLRQEEVALTTREYKLLELFMLNKDRVLSRRMIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 181 -WDDEVSSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219


>gi|332687247|ref|YP_004457021.1| phosphate regulon transcriptional regulatory protein PhoB
           [Melissococcus plutonius ATCC 35311]
 gi|332371256|dbj|BAK22212.1| phosphate regulon transcriptional regulatory protein PhoB
           [Melissococcus plutonius ATCC 35311]
          Length = 229

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G  +    + + +  L +     D+  I   ++      
Sbjct: 3   ILIVDDDKEIVELLSIYIHNEGYDV--VKAYDGKNALNKVHTIPDIDLIILDIMMPEMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV +I RR  
Sbjct: 61  MQVVKKLRKESQIPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSN 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +          E G + +  D  +   + G+   L   E  IL  L ++     +  +IF
Sbjct: 121 IKPTTNEPAILEVGTLIINKDSHEVKTIDGKEIQLTALEFGILYLLSSHPNHVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKID 227


>gi|307730902|ref|YP_003908126.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585437|gb|ADN58835.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 280

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR   +  +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLE 219


>gi|170757153|ref|YP_001780676.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122365|gb|ACA46201.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 233

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +   +      E    L       +  ++  L        
Sbjct: 7   ILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLP--KLSGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   IR  S VP+I ++     +  L+    G DD + KP   R+++ARV A+ RR   
Sbjct: 65  EVCSKIRESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRKLVARVKALIRRAYR 124

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G + V          G+   L   E ++L  L+ N G+   + Q+  
Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +G +D    +  V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|301062846|ref|ZP_07203439.1| putative transcriptional activator protein CopR [delta
           proteobacterium NaphS2]
 gi|300443046|gb|EFK07218.1| putative transcriptional activator protein CopR [delta
           proteobacterium NaphS2]
          Length = 224

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +       L  +   D + ++  L   G   L
Sbjct: 3   ILVVEDDPKIASFVANGLKEAGFAVDVAHDGVDGLHLGETEPYDAAMVDIMLP--GLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R      P+I +S   S+   +    +G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TLIEKLREKKITTPVIILSAKRSVDDRVRGLQTGGDDYMTKPFSFSELLARIHALIRRST 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    G + +    R+ +  GE   LP RE  +LE+L+ N+G+ V+KT I   +Y
Sbjct: 121 RVAEPSALSAGNLTLDLLTREVKRGGEEISLPAREFALLEHLVRNKGRIVSKTSILEHVY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NVV+  + ++R K+        + + R +GY +
Sbjct: 181 D-YSFDPQTNVVDVLVCRVRNKVDKDFDRKLIHTVRGMGYVL 221


>gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 1329

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL+             ++E  N  +    L  +   D+  ++  L       +
Sbjct: 3   ILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLP--KLDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + IR+  + VP++ ++   S        D+G DD V KP    E++ARV A+ RR  
Sbjct: 61  SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V S    E G +R+     +   Q +   L  +E  +LE LM N  +  +   I   ++ 
Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D   E+  V +HI  LR KL+      D V++   +GY +
Sbjct: 181 YEDTPGED-AVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRL 221



 Score = 83.4 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD     +    L    G+ +   N    E++  +  +     +   +   G   +
Sbjct: 384 ILVVDDDLKTLELLQVLLTPWGLEIVTLNY--PEQFWSTWEKIHPDMLILDIEMPGMSGI 441

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL ++IR+H Q   VP++ ++ + + +     F  G DD V+KPI   E++ R+     R
Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQVFSVGADDFVSKPIIISELVNRILNRLER 501

Query: 119 LK 120
           ++
Sbjct: 502 VR 503



 Score = 45.7 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 1    MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
            + ++ DD  + +     L    G  +   +S +           DV  ++  + G  G +
Sbjct: 1075 LVLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWE 1134

Query: 60   VLELPRIIRAHSQVPLIG 77
             +   +       +P++ 
Sbjct: 1135 TMAGLKKCSDTKDIPIVI 1152



 Score = 40.7 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 6/126 (4%)

Query: 2    FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++I+D   + D    LF  D   +E F +    E +  S + +   +   LI       
Sbjct: 1206 ILIIEDDHDLADLLATLF--DRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGF 1263

Query: 62   ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNK-PIHHREILARVAAIYR 117
             +   ++ H Q   +P++  S      +       G  +   K  +  +E   RV  + +
Sbjct: 1264 TVVDWLKQHDQLFSIPVVVYSAKDLDDSERHRLKLGHTEFFTKGRVTIQEFEQRVMDLLQ 1323

Query: 118  RLKVSN 123
            R+    
Sbjct: 1324 RITTKQ 1329


>gi|229112135|ref|ZP_04241678.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
 gi|228671458|gb|EEL26759.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
          Length = 229

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|206969651|ref|ZP_03230605.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228923426|ref|ZP_04086712.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954942|ref|ZP_04116960.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229072175|ref|ZP_04205383.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
 gi|229081927|ref|ZP_04214419.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
 gi|229147236|ref|ZP_04275593.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
 gi|229180989|ref|ZP_04308324.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
 gi|206735339|gb|EDZ52507.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228602546|gb|EEK60032.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
 gi|228636245|gb|EEK92718.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
 gi|228701515|gb|EEL54009.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
 gi|228710913|gb|EEL62880.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
 gi|228804763|gb|EEM51364.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836211|gb|EEM81566.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 229

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    LQ++ +ED   I   ++       
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGEI--GLQTALQEDYDLIILDIMLPKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|75762099|ref|ZP_00742004.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490417|gb|EAO53728.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 275

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 54  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 111

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 112 ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN- 170

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 171 EHKQIQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 229

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 230 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 269


>gi|319761447|ref|YP_004125384.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317116008|gb|ADU98496.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 236

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  +E     +    L +  R    A+   L+  G   L
Sbjct: 7   ILIVEDDDSIAELLRMHLSDEGYDVE--RVADGRLGLAAVERGGWHALVLDLMLPGVDGL 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R  RA    VP+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRSE 124

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K+       G + +    R+  V G+   L  RE  +L +     GK  ++  +
Sbjct: 125 ALARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQPGKVFSRLDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+ RN      + +    GY +
Sbjct: 185 LNQVWG-YRHDGYEHTVNTHINRLRIKIERNPADPKRILTVWGRGYKL 231


>gi|229590186|ref|YP_002872305.1| response regulator protein [Pseudomonas fluorescens SBW25]
 gi|229362052|emb|CAY48953.1| response regulator protein [Pseudomonas fluorescens SBW25]
          Length = 249

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 98/231 (42%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +   +    +G  +   +  +           D+  ++  L   G   L
Sbjct: 20  ILLVEDDAALSELIASYLERNGYQVSVLSRGDHVRERARLNPPDLVILDLMLP--GLDGL 77

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R++RA S  +P++ ++        +   + G DD V KP   R +LARV  + RR  
Sbjct: 78  QVCRLLRADSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 137

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +N++   G + +    R    + +   L   E  +L  L  + G+ +++ QI  
Sbjct: 138 LSEPQAANDQIIMGNLCIDLSERTVTWREQSVELSSGEYNLLVVLARHAGEVLSRDQILQ 197

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI---DW 222
            + G+ +    +  V+  ISKLR+K  +  G    + +    GY     +W
Sbjct: 198 RLRGI-EFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRSEW 247


>gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
 gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
          Length = 239

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D A + D      GD+G  +    S +     L+     D   ++  L   G   L
Sbjct: 7   LIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLP--GVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ +  RA ++ VP+I IS   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     E G +++    R   V+G    L  RE  +L +   +  +  A+ ++
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVEGTALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNQVWG-YQHDGYEHTVNTHINRLRSKIETDPANPRRLLTVWGRGYKL 231


>gi|289426029|ref|ZP_06427776.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428042|ref|ZP_06429746.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295131626|ref|YP_003582289.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|289153572|gb|EFD02286.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289158925|gb|EFD07125.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291376814|gb|ADE00669.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313763755|gb|EFS35119.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771771|gb|EFS37737.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793698|gb|EFS41729.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803009|gb|EFS44217.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808419|gb|EFS46886.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810594|gb|EFS48308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313816927|gb|EFS54641.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818159|gb|EFS55873.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821018|gb|EFS58732.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823910|gb|EFS61624.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827150|gb|EFS64864.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313829729|gb|EFS67443.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831635|gb|EFS69349.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834789|gb|EFS72503.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313839363|gb|EFS77077.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916486|gb|EFS80317.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918851|gb|EFS82682.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921060|gb|EFS84891.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314927043|gb|EFS90874.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932305|gb|EFS96136.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956579|gb|EFT00831.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959461|gb|EFT03563.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961863|gb|EFT05964.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964853|gb|EFT08953.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968642|gb|EFT12740.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974985|gb|EFT19080.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977919|gb|EFT22013.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314979592|gb|EFT23686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314984673|gb|EFT28765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988327|gb|EFT32418.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990417|gb|EFT34508.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079185|gb|EFT51188.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082350|gb|EFT54326.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083677|gb|EFT55653.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087318|gb|EFT59294.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089735|gb|EFT61711.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095610|gb|EFT67586.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315100230|gb|EFT72206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102554|gb|EFT74530.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315109528|gb|EFT81504.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327326602|gb|EGE68390.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL096PA3]
 gi|327332866|gb|EGE74598.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL096PA2]
 gi|327335264|gb|EGE76974.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL097PA1]
 gi|327447693|gb|EGE94347.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448568|gb|EGE95222.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449579|gb|EGE96233.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455879|gb|EGF02534.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456029|gb|EGF02684.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327458031|gb|EGF04686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757193|gb|EGF70809.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757384|gb|EGF71000.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757574|gb|EGF71190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328761991|gb|EGF75497.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL099PA1]
 gi|332676492|gb|AEE73308.1| response regulator MprA [Propionibacterium acnes 266]
          Length = 232

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 95/230 (41%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++         G  ++            S    D   ++  +       L
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPR--LDGL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R++R++ + VP++ ++   ++   +D  D+G DD + KP    E+LAR+ A+ RR +
Sbjct: 63  EATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +  +     + +    R+         L R E  +L   + N  K + +  + 
Sbjct: 123 PEPEQNEAPEQLSFADLTLDPGTREITRGNRRISLTRTEFALLAVFLQNPEKVLERWWLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
             ++G FD     N +E +I  LR+K  +      + + R +GY + + N
Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDGEPRLIHTVRGVGYVLREAN 231


>gi|154504737|ref|ZP_02041475.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
 gi|153794911|gb|EDN77331.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
          Length = 224

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D   +          +  S++  F+  E  ++L+  A  D   ++  +       
Sbjct: 3   ILVAEDEKDLNRLLSTRLKAEHYSVDSCFDGQEALDYLE-GAPYDAVVLDIMMPV--LDG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + + +R   SQ P++ ++   S++  +   D+G +D + KP    E+LAR+  + R+ 
Sbjct: 60  LSVLKTMRQKGSQTPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRKP 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K +     +   + V  D       G    L  +E  +L YL+ N G  +++ ++   ++
Sbjct: 120 KEAPQTVCKLDDLEVHLDTHQVLRAGHEIKLSGKEFALLRYLIQNTGIVLSRDRLEQHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D A   NV++ +I  LRKK+        + + R  GY +
Sbjct: 180 N-YDYAGGSNVIDVYIRYLRKKIDEGSQTKLIHTVRGAGYVM 220


>gi|118443679|ref|YP_877073.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134135|gb|ABK61179.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 232

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 12/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   + +        DG  +  ++++   E LQ     +V      ++        
Sbjct: 5   LIADDEEEIIELLSLYLEKDGHCI--YSAVNGLEALQIINNNEVDIAIIDIMMPQIDGYH 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR +  +P+I +S        +   D G DD + KP +  E+LARV A  RR   S
Sbjct: 63  LVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNKS 122

Query: 123 NNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +          E G +R+  +      +     L   E +IL YL+ N+GK   K QIF
Sbjct: 123 MSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQIF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++       ++N +  HIS LR K+ +       + + R LGY +D N
Sbjct: 183 EYVWEEP-FYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSN 231


>gi|105895299|gb|ABF78463.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
          Length = 249

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +   G DG+        +           D+  ++  L        
Sbjct: 18  ILIVEDEQAIADTIVYALGTDGMQTVHCTLAQAALDRLRDTHVDLVVLDVGLPD--LSGF 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + +P+I ++        +   + G DD V KP   RE+ ARV  I RR   
Sbjct: 76  EVCRRLRTFTDIPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRFHR 135

Query: 122 S-------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +                       + +DG      G    L R E  ++  L+ + G+  
Sbjct: 136 TAAPEPAPAPASADAPAPVASGFTLDTDGARVSWLGHALDLTRYEFGLMVLLVRHPGRIY 195

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++ Q+   ++    ++ +   V++HI  LR KLR      DP+ + R +GYS+
Sbjct: 196 SREQLMDLVWHEALDSAD-RTVDTHIKTLRAKLRAIDPERDPIRTHRGMGYSL 247


>gi|66048024|ref|YP_237865.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258731|gb|AAY39827.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|330972950|gb|EGH73016.1| heavy metal response regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 224

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  N+     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYVVDIANTGLDGLYLAQHQAYDVVILDVNLPE--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R      ++ ++    L+  +   + G DD + KP    E+LARV  + RR + 
Sbjct: 61  EVLSRLRKTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|134298499|ref|YP_001111995.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051199|gb|ABO49170.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 232

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G  +      E    L ++ + D+  ++  +       L
Sbjct: 6   ILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMP--KLDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + I+    VP+I +S    +   +  F  GVDD   KP    E+  RV A+ RR K 
Sbjct: 64  EASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKA 123

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  +     +    R   + G+   L  +E  +L  + ++  +  ++ Q+   
Sbjct: 124 VPEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           I+       +E+ V  HI +LR+K+ R+    + + +   +GY  +
Sbjct: 184 IWESH-FEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFE 228


>gi|332533011|ref|ZP_08408881.1| response regulator [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037490|gb|EGI73943.1| response regulator [Pseudoalteromonas haloplanktis ANT/505]
          Length = 219

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 106/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  LV  G I     +G S+E   +++      SS   ++  ++  L        
Sbjct: 3   LLLVEDDHLVAQGLIRSLRQEGYSVEHSGTVKHALECLSSGEIELVILDLGLPD--GDGS 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + I+A  +V P++ ++   S+   +   D G DD + KP    E+ AR+    RR+ 
Sbjct: 61  QVLKYIKAQKKVIPVVILTARGSIDDKVQGLDMGADDYLAKPFDPAELFARLRVASRRIN 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +     G + + +     ++ G+   LPR+E  +L+ LM N+G+  +K Q+ + +Y 
Sbjct: 121 QTQSSLLRCGDVVMDTSAHTVKLSGQSLTLPRKEYMLLKALMENQGRVQSKQQLENKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E V  N +E HI  LRKK       D + + R +GY +
Sbjct: 180 QWGEEVGSNAIEVHIHHLRKK----FPSDFIKTLRGIGYVV 216


>gi|300311799|ref|YP_003775891.1| two component heavy metal response transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074584|gb|ADJ63983.1| two component heavy metal response transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + G +++   +    + L      DV  ++  L   G    
Sbjct: 3   ILIVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVMLP--GLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R   + P+I ++   S++  +     G DD + KP    E+LAR+ A+ RR + 
Sbjct: 61  SVLRALRKVKETPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRA 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +   G +++    R     G    L  +E  +L  +   +G+ ++KT I   ++ +
Sbjct: 121 QEPAQLRIGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 -NFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLE 220


>gi|169826322|ref|YP_001696480.1| two-component response regulator YcbL [Lysinibacillus sphaericus
           C3-41]
 gi|168990810|gb|ACA38350.1| two-component response regulator YcbL [Lysinibacillus sphaericus
           C3-41]
          Length = 232

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++D        +G  +   N+ E       +   D+  ++  +       L
Sbjct: 7   ILLVEDDEAIRDMVANFLLLEGFDVTTANNGEEALQYCLNQTFDLVILDIMIP--KLNGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IR  + +P+I +S   S          G DD + KP    E  ARV A+ RR   
Sbjct: 65  EVLKVIREQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 124

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + +        GP+++          G    L  +E  IL+  + NR +   K QI+
Sbjct: 125 YAGQTDHKQDVVVIGPLKIDIVNFSINKNGLEVKLTSKEFAILKLFVTNRNRVFTKEQIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+       +EN++  HI +LR+K+ +       + +   +GY  +
Sbjct: 185 QLIW-KDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGYKFE 231


>gi|257439473|ref|ZP_05615228.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198132|gb|EEU96416.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 241

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   +E LQ    ++   +   ++  G    
Sbjct: 15  ILIIDDDRELCALIKRSVQSEHIEADFCNT--GKEGLQKLKEQEYQLVVLDVMMPGMDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 73  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 132

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N++       +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 133 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 192

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 193 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 238


>gi|165976486|ref|YP_001652079.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|307245974|ref|ZP_07528056.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307249167|ref|ZP_07531172.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250316|ref|ZP_07532266.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252700|ref|ZP_07534591.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254952|ref|ZP_07536771.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257108|ref|ZP_07538881.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259390|ref|ZP_07541115.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261545|ref|ZP_07543213.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263734|ref|ZP_07545340.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|165876587|gb|ABY69635.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|306852909|gb|EFM85132.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306854337|gb|EFM86535.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857643|gb|EFM89749.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859732|gb|EFM91754.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862070|gb|EFM94045.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864379|gb|EFM96289.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866326|gb|EFM98189.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868668|gb|EFN00477.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870855|gb|EFN02593.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 238

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG           ++ F   +       S   D   ++  L       L
Sbjct: 20  ILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFEALFSTEYDAVVLDLTLP--KMDGL 77

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
            + +  R  +  +P++ ++   +L   +  F+SG DD + KP    E++ R+ A+  RR 
Sbjct: 78  AILKNWRKENLDIPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRLQALIRRRY 137

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K S+     G + + S      +  +   L  +E ++L    +N+ + + ++ I   +Y 
Sbjct: 138 KQSSTEITLGDLTIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRSAIEEKLY- 196

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  V  N +E +I  LRKKL    G + + +   +GY I
Sbjct: 197 SWDNDVSSNAMEVYIHNLRKKL----GKEWIKTVHGIGYKI 233


>gi|158336595|ref|YP_001517769.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306836|gb|ABW28453.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 231

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 107/226 (47%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
           +L++D   +          +   ++   +  E   +L+S   +  ++  +  L   G   
Sbjct: 4   LLVEDEPDLGAAIQRTLTQEAYIVDWAKDGREAWGYLESQWTQYTLAIFDWLLP--GLSG 61

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++L + +RA  S +P++ ++     + T    D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  IDLCQRLRAQQSPLPVLMLTAKDQPEDTATGLDAGADDYLVKPFRKIELLARLRALQRRS 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 + + GP+ +     +  +    QG+   L  +E ++LEY M +  + V++ QI 
Sbjct: 122 PHFQPQQLQVGPLTLDYGTHNVSILNQEQGQSVLLTHKEFQLLEYFMQHPRQIVSRDQIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G   + +  NVV + + +LR+KL      D +++   +GY +
Sbjct: 182 NQLWGAEADTI-SNVVAALMRQLRRKLAELGCDDAIETVYGVGYRL 226


>gi|21673488|ref|NP_661553.1| DNA-binding response regulator [Chlorobium tepidum TLS]
 gi|21646594|gb|AAM71895.1| DNA-binding response regulator [Chlorobium tepidum TLS]
          Length = 236

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 101/229 (44%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      ++   EE L    R  V+ +   ++  G    
Sbjct: 6   ILIVEDDRNLAGLLKYNLEKAGYGC--IHAASGEEALDELQRHAVNLVLLDIMLPGIDGF 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IR     S +P++ ++        +  F+ G+DD V KP   RE+  R+ AI +R
Sbjct: 64  EVCRRIRQNVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKR 123

Query: 119 LKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + +         +G I +     +  + G    L   E ++L  LM  +G+   +  + 
Sbjct: 124 DRRNRSNVQEVLRSGGIELDIGRHEATLDGRPLVLTLMEFKLLALLMKRKGQAQTREVLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S ++ + D+++    +++H+++LR+KL +   F  + + R LGY  D N
Sbjct: 184 SDVWDV-DKSINTRTIDTHVTRLREKLGDAGRF--IRTVRGLGYKFDEN 229


>gi|291549838|emb|CBL26100.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 228

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G S E   S    + L +      + +   L+  G    
Sbjct: 4   ILIVEDDTNINNLLQEALSKEGYSCEQAFSGTEAKLLLNMQEHGYALVLLDLMLPGIPGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   IR    +P+I ++   SL   ++   SG DD + KP   RE+LARV    R  + 
Sbjct: 64  AVLEEIRKKGNLPVIVLTAKDSLDEKVEVLTSGADDYITKPFEIREVLARVQVQLRHKEE 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +      + +  D    E+ G++ P + ++E  ILE L+ N  +  +K  IF  
Sbjct: 124 KEAEEQHTLSFKDMLLNRDTFQVEIDGKILPKITKQEFAILELLLRNPKQVFSKEDIFEY 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 184 AWDEP-YMGETKTLDVHISNIRKKIKQVTSEEYIETVWGIGYRL 226


>gi|90418366|ref|ZP_01226278.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1]
 gi|90338038|gb|EAS51689.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1]
          Length = 223

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 128/220 (58%), Positives = 167/220 (75%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LV DGY ++FG +GVS  GF + EF +W++++   D+SA+EAFL+G  +  
Sbjct: 1   MIVVVDNRELVTDGYESMFGREGVSAAGFKADEFRDWVETAPESDLSAVEAFLLGDFDDR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              PR+IRA S+ P+I +S+  +L  TLD F +GVDDVV KP+H +EILARV AI RR +
Sbjct: 61  TICPRLIRARSKAPMIALSEGRNLDGTLDLFAAGVDDVVAKPVHVKEILARVGAIRRRNE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G I V+ DGRD EV G+   LPRRERRILEYL+ANRG+RV+K Q+FSAIYG+
Sbjct: 121 TEDARTVVGEISVYQDGRDAEVAGKPMALPRRERRILEYLVANRGRRVSKQQLFSAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FDE VEENV+ESHISKLRKKL+ +LG+DPV SKR+LGY I
Sbjct: 181 FDENVEENVIESHISKLRKKLKMRLGYDPVSSKRYLGYGI 220


>gi|89897063|ref|YP_520550.1| hypothetical protein DSY4317 [Desulfitobacterium hafniense Y51]
 gi|219667066|ref|YP_002457501.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89336511|dbj|BAE86106.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537326|gb|ACL19065.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G  ++          L       +  ++  +   G    
Sbjct: 9   ILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLAKQLHPHLVILDIMMP--GMDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+++    V +I ++    ++  +     G DD + KP    E+LAR+ A  R    
Sbjct: 67  EVCRMLKKSENVSIIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHARIRNQFP 126

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +       GP R+    ++ + Q +V  L   E  +L++L+ N+G  ++KT I   ++G 
Sbjct: 127 TLLGEVVMGPFRLDDRRKEIQFQDKVLELSPTEYELLKFLILNQGLVLSKTMILDKVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D A ++N+VE +I  LR+KL +K     + + R  GY +D
Sbjct: 186 YDFAGDDNIVEVYIRSLREKLGDK-EHRLIRTLRGSGYRMD 225


>gi|308084098|gb|ADO13165.1| QseB [Edwardsiella tarda ATCC 15947]
          Length = 219

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G +L+ F+          +A  D   ++  L   G   LE
Sbjct: 4   LLIEDDRLIGDGIKAGLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLP--GIDGLE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R  R      P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  ILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +   G + +        + G    L  +E  +LE L+ N G+ + ++ I   +Y  
Sbjct: 122 QTQTQLSHGAVTLDPLSLTATLDGAPLLLKPKEFALLELLLRNAGRVLPRSLIEEKLYN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  V  N VE HI  LR+KL +      + +   +GY++
Sbjct: 181 WEGDVSSNAVEVHIHHLRRKLGSAF----IRTVHGVGYTL 216


>gi|228999603|ref|ZP_04159180.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229007150|ref|ZP_04164773.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228754098|gb|EEM03520.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228760129|gb|EEM09098.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 229

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F ++   +    + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLNEQYKV--LEARDGKEALSLFEEEEVHLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  SQVP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRIL 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +     ++      I V    R   ++G    L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TSKSPSNEDDTLSIHGICVHFPSRIVTIEGVDINLTHTEFEILTYFMQNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL +K     + +   +GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGDK--AKYITTVVRMGYKFEGN 228


>gi|283787153|ref|YP_003367018.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
 gi|282950607|emb|CBG90278.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
          Length = 219

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D AL+ DG        G  ++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDALIGDGIKTGLSKMGFCVDWFTDGRQGKEALHSAPYDAVILDLSLP--GMDGR 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R  R    + P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILRDWREQGKREPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALMRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +    R   + G    L  +E  +LE LM N+G+ + +  I   +Y 
Sbjct: 121 GQASSELCHGQVTLNPGNRVAALNGSALALKPKEFALLELLMRNKGRVLPRKLIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 181 -WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|260436657|ref|ZP_05790627.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
 gi|260414531|gb|EEX07827.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
          Length = 272

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++           L  +   D+  ++  +        
Sbjct: 35  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVMMP--KLDGY 92

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 93  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 152

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   +R+ ++ R      E   L   E  +LE L++  G+   + +I 
Sbjct: 153 EQVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFNRGEIL 212

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 213 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 258


>gi|158334884|ref|YP_001516056.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158305125|gb|ABW26742.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 241

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 101/231 (43%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-----AREDVSAIEAFLIGK 56
            +L+DD   + D    L   +G S++  N  E                D+  ++  L   
Sbjct: 4   ILLVDDEVELTDALGRLLKREGYSVDVANDGEAALLAVQQKIDQGQLYDLLILDWMLP-- 61

Query: 57  GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               +E+ + +R+ SQ  P++ ++   +L   +   D+G DD + KP   RE+LARV A+
Sbjct: 62  KLSGIEVCQELRSQSQLTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRAL 121

Query: 116 YRRLKVSN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
            RR +  +         R +   + +  + +    QG+   L  +E ++L YLM +  + 
Sbjct: 122 LRRSEQFSQTSPEALFQRIQMEGLELDLESQIAYCQGQAITLSEKESQLLTYLMQHPHQL 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   QI+  ++   D+    NV+ + I  LR+K+  K     + +    GY
Sbjct: 182 LTHDQIYQHLWPSGDQ-PSSNVLAAQIRLLRRKIAAKNSPPLIHTIYGKGY 231


>gi|296505136|ref|YP_003666836.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296326188|gb|ADH09116.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|283783078|ref|YP_003373832.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|298253498|ref|ZP_06977288.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
 gi|283442136|gb|ADB14602.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|297532265|gb|EFH71153.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
          Length = 250

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 96/233 (41%), Gaps = 24/233 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   +           G    V+ +G +++   E L    + D+  ++  L    
Sbjct: 14  ILVVEDEPDLATAIAQRITAQGWRARVATDGASAVRAAEQL----KPDLIIMDIMLPI-- 67

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +E  R I +   VP++ ++   +    +    +G DD + KP   RE++AR AA+ R
Sbjct: 68  MDGIEATRRIISKMPVPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLR 127

Query: 118 RLKVSNNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R++ ++  A+T         G + +    R   +  +       E  +L  L  +     
Sbjct: 128 RVERASQIAKTMEHERTINFGSLIIRPRQRLVTLNDKEVHFTPTEFDLLATLARHPHTVF 187

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++   ++   D +     V+SHI  LR K+    G + + +   +GY+ +
Sbjct: 188 KREKLLEEVWDWPDASG-TRTVDSHIKSLRHKI----GSEWIRTVHGIGYAFE 235


>gi|256842825|ref|ZP_05548313.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256848811|ref|ZP_05554245.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|312977655|ref|ZP_07789402.1| DNA-binding response regulator ResD [Lactobacillus crispatus
           CTV-05]
 gi|256614245|gb|EEU19446.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256714350|gb|EEU29337.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|310895394|gb|EFQ44461.1| DNA-binding response regulator ResD [Lactobacillus crispatus
           CTV-05]
          Length = 240

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 105/235 (44%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEK 59
            ++++D   V +     F  +G   +   + +E  +  + +A + D+  ++  L  K   
Sbjct: 5   ILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKK--D 62

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR
Sbjct: 63  GIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRR 122

Query: 119 LKVSNN-----------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGK 166
           + +                 T  +++  + R+     +    L  +E  +L  +     +
Sbjct: 123 VMMEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 183 VFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|229032321|ref|ZP_04188294.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
 gi|228729101|gb|EEL80104.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
          Length = 229

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLVEDEISIAELQRDYLEISDFQVDVEHSGEVGLQMALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|119896748|ref|YP_931961.1| two-component response regulator [Azoarcus sp. BH72]
 gi|119669161|emb|CAL93074.1| two-component response regulator [Azoarcus sp. BH72]
          Length = 228

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A           + G +++         +L ++A  D   ++  L       L
Sbjct: 3   ILLVEDDAQQAGYIRKGLQEAGHTVDVAADGRDGLFLATTASFDAIVLDRMLPRV--DGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
            + R +RA     P++ +S    +   +    +G DD + KP    E+LAR+ A+ R   
Sbjct: 61  TVLRTLRASRIATPVVVLSALGEVDDRVAGLRAGSDDYLVKPFALSELLARLDALQRRGN 120

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R +    R +T  + +    R          L  +E R+LE+L+ + G+ V ++ +  A
Sbjct: 121 GRAEAEQTRLQTADLEMDLLRRSVSRGATRIELKPKEFRLLEFLLRHSGQVVTRSMLLEA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +    + NV++ HIS LR K+        + + R  GY +
Sbjct: 181 VWD-YHFDPQTNVIDVHISNLRAKIDLPGLPPLIHTVRGAGYRL 223


>gi|304310969|ref|YP_003810567.1| Probable transcriptional regulatory protein [gamma proteobacterium
           HdN1]
 gi|301796702|emb|CBL44914.1| Probable transcriptional regulatory protein [gamma proteobacterium
           HdN1]
          Length = 224

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++      G  G S++  +  +   +  +    D++ ++  L       ++
Sbjct: 4   LIVEDEPHLQEQLAVALGRAGYSVDRASDGKEGLYFGTEYNYDIAIVDLGLPQ--IDGMD 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R  R  +++ P++ ++   S Q  +   + G DD V KP    E++AR  A+ RR   
Sbjct: 62  VIRRWRESNRIFPVMVLTARSSWQDKVAGLEIGADDYVVKPFQMEEVVARANALVRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++ +    GPI + ++ +   +  E   L   E R+LEYLM +  + ++K  +   IY  
Sbjct: 122 ITQSSIRLGPIELDTNKKQVRLHEEPLDLTSYEYRVLEYLMMHPEELISKAVLTEHIYAQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + N +E  I +LRKKL     + P+++ R +GY ++
Sbjct: 182 -DFERDSNTIEVFIGRLRKKLDPDNQWKPIETVRGMGYRMN 221


>gi|291457450|ref|ZP_06596840.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
 gi|291381285|gb|EFE88803.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
          Length = 243

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+      D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238


>gi|170077559|ref|YP_001734197.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885228|gb|ACA98941.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 239

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++   +   G  G ++      +  +    S   D+  ++  L        
Sbjct: 6   ILVVDDDPAIRTLIVRFLGQKGYAVAAATDGQSAKETFQSFSPDLVILDINLPDT--LGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L   ++      ++ ++        +  F  G DD + KP    E+  RV AI RR + 
Sbjct: 64  ALCEQMQESKDTYVLILTSRTDATDKVRGFTQGADDYLTKPFDIIELEHRVHAILRRQRS 123

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   +   + +        V+GE   L   E  +L +L  N  K   ++++  
Sbjct: 124 PVAPPARDQSLDFADLNIDPMRHVVAVKGEPVNLTALEFNLLHFLAKNANKVWRRSELIQ 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           A++G +D   ++ VV+ HI ++R+KL N +   +P+ + R +GY  +
Sbjct: 184 AVWG-YDYLGDQRVVDVHIGQIRRKLDNLMQQENPIKTVRGVGYMFE 229


>gi|251795715|ref|YP_003010446.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543341|gb|ACT00360.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 229

 Score =  226 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 1   MF---VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
           M    +LI+D   + +        +G  ++     E    +  S   D+  ++  +    
Sbjct: 1   MIKSVLLIEDDTTIAELQRDYLEINGFEVQVAADGEAGLAMSLSGHYDLVILDLMIP--K 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+ + IR    +P++ ++        +     G DD + KP    E++ARV A   
Sbjct: 59  MNGFEVCKKIREKQDIPILIVTSLHDDIDVIRGLGLGADDYITKPFKPAELVARVKAHLA 118

Query: 118 RLKV------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R +         N  +   + +  D R   V  E   L  +E  +L +L ++  K  +K 
Sbjct: 119 RYERLVGKKDVKNIVQIRDLYIDPDTRKVYVNDEEAVLTTKEFDLLYFLASHPNKVFSKE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            +F  I+G+ D   +   V  HI K+R+K+  +      +++    GY 
Sbjct: 179 HLFERIWGV-DALGDMQTVTVHIRKIREKIEKDSANPVYIETVWGAGYR 226


>gi|304408338|ref|ZP_07389985.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342627|gb|EFM08474.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 95/226 (42%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A     G     F   E      ++ +  +  ++  L   G    
Sbjct: 4   IMVVEDEPAISRVLAAYIKKAGYECAVFTQGELAVEQLTTVQPALILLDVMLP--GLDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S  P+I ++    +   L   +SG DD + KP    E++AR+ AI RR   
Sbjct: 62  EVLREVRNRSTCPVIMLTAKGEIGDRLLGLNSGADDYIIKPFEPVEVIARIQAILRRPSH 121

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +++ + G +R+    R   + GE   L  ++  +L +L  +  +   + Q+   ++
Sbjct: 122 ALITDHQKQYGSLRIDFKSRSVSLNGETLSLTPKDLALLLFLAEHPNQIFHREQLIERVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
           G+ D    +  V+  I +LR+ L      D  + + R  GY    N
Sbjct: 182 GI-DYDGSDRAVDHAIKRLRQSLHPMPPEDGGIRTLRGTGYQFYAN 226


>gi|296169906|ref|ZP_06851518.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895462|gb|EFG75164.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 257

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  ++  ++             DV  ++  L       L 
Sbjct: 35  LLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMATFDKVSPDVLVLDIMLPDV--DGLR 92

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R      P + ++   S+   +    +G DD + KP    E++AR+  + RR   
Sbjct: 93  ILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSGQ 152

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++   + G +R+ +  R+    G    L   E  +L +LM N  + +++++I   +
Sbjct: 153 QTPPADETLKVGDLRLDTASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRSEILDRV 212

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D A   ++V+ +IS LRKK+ +      + + R +GY +
Sbjct: 213 WN-YDFAGRTSIVDLYISYLRKKIDSGREP-MIHTVRGVGYML 253


>gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 235

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +      +    L  S   D   ++  L       +
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYQVVSAVDGKMGVDLALSEDFDFIILDVMLPQ--MDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    + P++ ++        +   + G DD + KP   RE+LAR+ AI+RRL+
Sbjct: 62  EITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLE 121

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          + G I          V+GE   L  +E  +L Y M  +G+ + + 
Sbjct: 122 PRGTADLSDQPAEMLQIGDILADLTNYQVSVKGEKIFLTPKEFELLIYFMKRKGRVIDRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + + I+  FD   +  +V+ HIS LR+KL R+    + + + R  GY  
Sbjct: 182 TLLNRIWN-FDFDGQSRIVDVHISHLREKLERDPKHPEYLVTVRGFGYKF 230


>gi|127514347|ref|YP_001095544.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126639642|gb|ABO25285.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 242

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +              +   N+L        S   D+  ++  L       L
Sbjct: 16  ILLVEDEPDLARLIRLNLESLQHEVTQVNTLNQARQQLRSKCFDLLLLDRMLSD--GDGL 73

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R     +P + I+   S    +   +SG DD + KP    E+ ARV A+ RR  
Sbjct: 74  TLCQQLRQEGKSLPCMMITARDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRSA 133

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + + S  R+     +   L  RE  +L YL  +  +  ++ Q+  A+
Sbjct: 134 QQAADQYALTFDELVIDSKTREVTAANQPLALTAREFDLLYYLAQHPRQVFSRMQLLEAV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G +  A  E+ V SHI++LR KL       + V +   +GY  
Sbjct: 194 WG-YSYAGYEHTVNSHINRLRAKLACCPSSNELVQTVWGVGYKF 236


>gi|194336101|ref|YP_002017895.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308578|gb|ACF43278.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 227

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 94/218 (43%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++  +++     +    +      D+  ++  +       +
Sbjct: 3   LLIIEDEPGIAGFLKDGLEEEYFAVDIAYDGKSGLDMALINEYDLIIVDWMIPA--ISGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR     VP++ ++   +L+  +   D+G +D + KP    E+LAR+    R   
Sbjct: 61  EVCRQIRKTGNAVPILFLTAKDTLEDVIFGLDAGANDYIKKPFEFEELLARIRVQLRNKN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++    G + +               L  +E  +LEYL+ N+ +   +++I   ++ +
Sbjct: 121 RNDDSLNAGILNINPVTHQVFCASTEVTLTPKEFALLEYLVRNKDRVCTRSRIIEHVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                + +V++ +I+ LR+KL      + + + R +GY
Sbjct: 181 H-FDSDTSVIDVYITFLRRKLEAAGCGNIIQTIRGVGY 217


>gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 233

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +   +E     + E  L+ + +ED + I   ++   E   
Sbjct: 4   ILIVEDDRAIAELERDYLEANDYEVEICE--DGESGLKRALQEDFALILLDVMLPKEDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R +RA   VP+I +S        +     G +D + KP +  E++ARV +       
Sbjct: 62  QVCRNLRAVKNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   N+ +   + +  +  +  + G    LP +E  +L +L  N     +K Q+F
Sbjct: 122 LTQGTQRKENQLQIENLTIDLNSHEVFLDGNSLVLPNKEFELLVFLAKNPNIVFSKDQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+GL D   E + V  HI+++R+K+  +      +++    GY  
Sbjct: 182 EKIWGL-DAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRF 227


>gi|297571966|ref|YP_003697740.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932313|gb|ADH93121.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 224

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 91/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    L   +G  +    +      L  +   D+  ++  L   G   +
Sbjct: 3   ILVVDDDPGISEMVAILLESEGYDVSVCANGSNVVPLFRAEHPDLVLLDVMLP--GLDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R++R  S VP+I +S        +   ++G DD V KP  +  +LARV    RR + 
Sbjct: 61  SVCRLLREESDVPIIMMSAKTDSLDVIAGLEAGADDYVTKPFENSVLLARVKVRLRRQEN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +   + +     + +   E   L   E  +L  L     +  ++ ++   ++G +
Sbjct: 121 ESEILKVADLSIDLKAHEVKRGHETVHLTPLEFDLLTVLARKPYQVFSREELLEQVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
             + +  +V  HI +LR K+ R+      V + R +GY 
Sbjct: 180 RHSADTRLVNVHIQRLRAKVERDPENPGVVLTVRGVGYR 218


>gi|281180069|dbj|BAI56399.1| two-component response regulator [Escherichia coli SE15]
          Length = 219

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELLRGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|228936126|ref|ZP_04098931.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823536|gb|EEM69363.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 229

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMRNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|227489423|ref|ZP_03919739.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227541018|ref|ZP_03971067.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227090601|gb|EEI25913.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227183278|gb|EEI64250.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 233

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +   +  E    +   +R D   ++  +   G    E
Sbjct: 9   LVVDDEPNIVELLQVSLRFQGFDVVTASGGEEALKVAEESRPDAFILDVMMP--GMDGFE 66

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P++ ++   +++  +     G DD V KP    E++ R+  I RR K 
Sbjct: 67  LLTKLRETGHDGPVLFLTAKDAVEDKIHGLTIGADDYVVKPFSLEEVITRLRVILRRGKA 126

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++       + +  +  +    G +  L   E  +L YLM N    V+K +I   
Sbjct: 127 EETEEASGVLTYADLTLNDETHEVTKAGTIVDLSPTEFNLLRYLMLNAEVVVSKAKILDN 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+  +     + + R +GY +
Sbjct: 187 VW-HYDFGGDGNVVESYISYLRRKIDTQ-EPQLIQTVRGVGYVL 228


>gi|227890585|ref|ZP_04008390.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299690|ref|ZP_07205943.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|227867523|gb|EEJ74944.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300214343|gb|ADJ78759.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
 gi|300852702|gb|EFK80333.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 228

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   E   +      L      D   ++  L       L
Sbjct: 4   ILIIEDEKNLSRFVELELQHEGYETEVCKNGRQGLELALDEDWDAILLDLMLPE--LNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+++
Sbjct: 62  EVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVEL 121

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N +            + +  + R      E+  L +RE  +L  LM N    +A+  + 
Sbjct: 122 ENEQNGNKQTTLTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDTLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G ++  +E NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 KKVWG-YETQIETNVVDVYIRYLRNKIDRPGEDSYIQTVRGTGYVM 226


>gi|114797880|ref|YP_760030.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114738054|gb|ABI76179.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 235

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +      +  D G  +E  +       +  ++  D   ++  L  K    L 
Sbjct: 13  LVIEDDTEMASFIEKVLLDAGHKVERASDGASGLAMARASEYDALIVDRMLPEK--DGLT 70

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L +  RA     P + +S    +Q  +    +G +D + KP    E+ ARV A+ RR   
Sbjct: 71  LLQEFRAAGGTTPALFLSALGDVQNKVQGLRAGAEDYLGKPFAPAELAARVEALGRRQTN 130

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +       + G + +    R     G+   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 131 AEPPVTVLKAGDLEMNLLTRKVTRAGKKIDLQPREFRLLEYLMRHAGQVVTRTMLLEKVW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++   + NV++ HIS+LR K+  +     + + R  GY +
Sbjct: 191 D-YNFDPQTNVIDVHISRLRAKIDKEFAEPLLQTVRGAGYRL 231


>gi|163940843|ref|YP_001645727.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863040|gb|ABY44099.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 228

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++    +++ +E L      +V  I   ++       
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNV--LEAIDGKEALSIFEEHEVHLIILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYS 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I V    R   V GE   +   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 STINVSTADTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYFMQNQGIVISREQLIT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGGK--ATCIVTVVRTGYKFE 225


>gi|315123018|ref|YP_004065024.1| response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016778|gb|ADT70115.1| response regulator [Pseudoalteromonas sp. SM9913]
          Length = 219

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  LV  G       +G S+E   +++       S   ++  ++  L        
Sbjct: 3   LLLVEDDHLVAQGLCRSLRQEGYSVEHSATVKHALQCLGSGEIELVILDLGLPD--GDGS 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + I+A  +V P++ ++   S+   +   D G DD + KP    E+ AR+    RR+ 
Sbjct: 61  QILKHIKAQKKVIPVVILTARSSIDDKVQGLDMGADDYLAKPFEPAELFARLRVASRRVN 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   + G + + +      +  E+  LPR+E  +L+ L+ N+G+  +K Q+ + +Y 
Sbjct: 121 QAQSSLLQCGDVTMDTSAHSVTLNDELLSLPRKEYMLLKALLENQGRVQSKQQLENKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E V  N +E HI  LRKK       D + + R +GY +
Sbjct: 180 QWGEEVGSNTIEVHIHHLRKK----FPSDFIKTLRGIGYVV 216


>gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +         ++   +      +    L S  + D   ++  L   G   +
Sbjct: 4   ILVVDDEAAISTLLQYNLEENNYDVTVAEDGQTAYQLASQQQFDAILLDLMLP--GMDGM 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P+I ++        +   + G DD + KP   RE++AR+ A+ RR +
Sbjct: 62  TVLKTLRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQ 121

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V +  +E         + +  + +      ++  L  RE  +L Y     G+ + +  I 
Sbjct: 122 VDHQVSEEADIIKIQDLVIDDNKKVVTKADKILTLTPREYELLLYFAQRIGRVIDRETIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +A++G ++   E  +V+ HIS LR+K+  N      + + R  GY++
Sbjct: 182 TAVWG-YEYTGESRMVDMHISNLREKIETNPKSPVLLKTVRGFGYTM 227


>gi|224541344|ref|ZP_03681883.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525781|gb|EEF94886.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
           15897]
          Length = 223

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G   +   +   EE L     + +      ++  G    
Sbjct: 5   IMVVDDEMHIRELVRFYLDKAGF--DTIEAANAEEALDIVENQYIDLAVVDIMMPGMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R + + P+I ++     +  L  F  G+DD V KP    E++ARV  I +R  +
Sbjct: 63  ELVEQMRQYREFPVIMLTAKSQSKDKLRGFSLGIDDYVTKPFDPDELMARVKTILKRYSI 122

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  + G +    D  +   Q +V  LP ++  +   L  N  +   + Q+   I+G+
Sbjct: 123 NSSNVVKIGDVIFDGDKYEVRYQEQVIHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D    +  V+ HI ++R+ L +  GF  V + R LGY I+ 
Sbjct: 183 -DYDGFDRTVDVHIKRIRENLGHLPGFKVV-TVRGLGYKIEV 222


>gi|315923877|ref|ZP_07920105.1| phosphate regulon response regulator [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622717|gb|EFV02670.1| phosphate regulon response regulator [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 235

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 103/224 (45%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
              ++D   +++  +        ++EGF +   F + LQ+    D+  ++  L   GE  
Sbjct: 3   IYCVEDDDSIRELIVYTLNRSEHNVEGFAAAGPFWQALQAGTLPDLVLLDIMLP--GEDG 60

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + + + +RA     ++P+I ++   +    +   D+G DD + KP    E+L+R+ A+ R
Sbjct: 61  IAVLKKLRAQGRTREIPVIMLTAKNAEVDKVMGLDAGADDYMTKPFGMMELLSRIRAVGR 120

Query: 118 RL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R  +   +    GPI +        V G+   L  +E  +L  L+A  G  + +  + + 
Sbjct: 121 RTMRAPASTFSAGPITMDVRAHRVCVAGKAVALTLKEYNLLALLLAGAGTVLTRDALLTK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G +D   E   V+ HI  LR+KL +      +++   +GY I
Sbjct: 181 IWG-YDFDGETRTVDVHIRTLRQKLGDAG--KMIETVHGVGYRI 221


>gi|228960939|ref|ZP_04122572.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798835|gb|EEM45815.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 229

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    LQ++ +ED + I   ++       
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGEI--GLQTALQEDYNLIILDIMLPKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|206969897|ref|ZP_03230851.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228955094|ref|ZP_04117109.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229048515|ref|ZP_04194077.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229072320|ref|ZP_04205524.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229082069|ref|ZP_04214555.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229112277|ref|ZP_04241816.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229181134|ref|ZP_04308466.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|206735585|gb|EDZ52753.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228602325|gb|EEK59814.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228671117|gb|EEL26422.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228701238|gb|EEL53738.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228710745|gb|EEL62716.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228722831|gb|EEL74214.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228804604|gb|EEM51208.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 229

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|121535649|ref|ZP_01667454.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121305753|gb|EAX46690.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 224

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 109/222 (49%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  +AL  ++   ++   + +   +L      D+  ++  L       L
Sbjct: 3   ILVVEDDHALREAVVALLTEENYLVDEAATGDEGLYLAEQGIHDLLVLDIMLPE--ISGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA     P++ ++   S+   ++  ++G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EIIKRVRATGHTMPILLLTARDSVADRVNGLETGADDYLTKPFAIPELLARIKALLRRSG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + +   G + +    RD  V+G+   L  +E  +LE+LM N+ + + + QIF  ++
Sbjct: 121 NLGKDGKISYGGVVIDGKLRDGFVEGQALGLTAKEYELLEFLMLNKEQILTREQIFDRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G F      +VV+ +I  LRKKL +    + + + R  G+ +
Sbjct: 181 G-FASETTISVVDLYIHYLRKKLASFDRDNLIQTIRGAGFML 221


>gi|257884144|ref|ZP_05663797.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257819982|gb|EEV47130.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 234

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +           L      D   ++  L       +
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPT--MDGM 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RR+ 
Sbjct: 62  EITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIE 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +        G I          V   +  L  +E  +L Y M  + + + +  
Sbjct: 122 PRKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDT 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   I+  FD A +  +V+ H+S LR+K+ R+      + + R  GY  
Sbjct: 182 LLDRIWN-FDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKF 229


>gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 227

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +         +   D+  ++  L       L
Sbjct: 5   ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPN--ISGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  + V P+I ++   S+   +   D G  D + KP    E+LAR+ A  R   
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V     N+  +   + +    R+ +    +  L  RE  +L +LM +  + + + QI + 
Sbjct: 123 VVKEEQNSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LRKK+   +    + + R +GY +
Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKVDCNVDVPLIHTVRGVGYVL 225


>gi|167760992|ref|ZP_02433119.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704]
 gi|167661371|gb|EDS05501.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +     A     G+  +  +       L    R D+  ++  L  K     
Sbjct: 6   ILIVEDDADISMIEEAYLNTAGLETKIVSEGSQVVPLLEKERFDLILLDLMLPDK--SGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR    +P++ ++        L  F +G DD ++KP    E++ARV A  R+ + 
Sbjct: 64  EICKEIRDKLDIPILMVTARTESVDKLRGFGAGADDYISKPFDPAELVARVNANLRQYER 123

Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           S            +    G +R+ ++G       +    P RE  +L++L  N     +K
Sbjct: 124 SRFGAAKKSEKNPDEIVIGDLRILTEGWKVYKGEKEIRFPNREFELLQFLAMNPNIVFSK 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
            Q+F  I+G +D   +   V  HI+++R+K+ +      + ++    GY ++
Sbjct: 184 EQLFEKIWG-YDYVGDSATVMVHINRIREKIEDDSRKPKILETVWGAGYRLN 234


>gi|73539148|ref|YP_299515.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122485|gb|AAZ64671.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 235

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 19/230 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE----------EWLQSSAREDVSAIEAF 52
           +L++D A++ D        +G +++     E                  A  D+  ++  
Sbjct: 4   LLVEDDAMIGDSVKLALRQEGFAVDWVQDGEAGLAAGTPTGGSGGADEGACYDLILLDLG 63

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L  +    L++ R +RA     P++ ++   ++   +   ++G DD + KP   +E+ AR
Sbjct: 64  LPRR--SGLDVLRALRARGVSTPVLILTARDAIADRVAGLNAGADDYLVKPFDLQELAAR 121

Query: 112 VAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ RR +  +      G I +    R+  + GE   L  RE  +L  LMA  GK  + 
Sbjct: 122 MHALARRAEGRAEPILSYGAISLNPATREVTLNGEPVHLSAREFSLLSALMARPGKVWSV 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   +Y  +D+ V  N VE +I  LRKK     G   + + R +GY +
Sbjct: 182 AQLQERLY-SWDDEVGSNTVEVYIHALRKK----FGAALIRNIRGVGYVM 226


>gi|330470318|ref|YP_004408061.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328813289|gb|AEB47461.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 227

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +          A  D+  ++  L        E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRAGADIVLLDLMLPE--MSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRQRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSPE 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++        GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 123 TVESGTATLAAGPVRMDIERHVVTVDGSTVQLPLKEFELLELLLRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEPEPSSPRHIVTVRGLGYKFE 226


>gi|326383367|ref|ZP_08205054.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197773|gb|EGD54960.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 224

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  ++   + +    LQ +  E    +   ++  G    E
Sbjct: 4   LLVDDDPAIAETVRRTLVAEGWVVD--TATDGLTGLQKALSEPFDVVVLDIMMPGRNGYE 61

Query: 63  LPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R + RA    P++ ++         D FD G DD + KP     ++AR+ A+ RR   
Sbjct: 62  VVRDLRRAQVWTPVLMLTAKDGEYDQADAFDFGADDYLTKPYSAVVLVARLRALARRGAP 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 T G + +       +       L RRE  +LE+LM N+G+ V KTQI  +++ +
Sbjct: 122 ERPAVMTAGSLSLDPSAHVVKRGDTELSLTRREFALLEFLMRNKGQAVTKTQIVDSVWDV 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   +ENVVE +IS LRK++    G   + + R +GY +D
Sbjct: 182 -NYTGDENVVEVYISYLRKRIDAPFGCKSIQTVRGVGYRLD 221


>gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 269

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+   +      G  +      E    L    + D+  ++  L        
Sbjct: 26  LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALTLFHQEQPDLVVLDVMLP--KLDGF 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+  
Sbjct: 84  AVCRRLRAESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGR 143

Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  AE             G + V ++ R     GE   L   E  +LE L    G+ V 
Sbjct: 144 GSAAAEPREATPGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVP 203

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R  GY
Sbjct: 204 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254


>gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
 gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
          Length = 219

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   ++          G  ++     E   +L  +   D   ++  L    G  VL
Sbjct: 4   LVVEDDDNLRRQLREALEAGGYVVDEAADGEEGHFLGDTEPYDAIVLDVGLPVMDGISVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E  R  R   +VP++ ++        +   D+G DD V KP H  E+LARV A+ RR   
Sbjct: 64  E--RWRRDQKKVPVLILTARDRWSDKVAGIDAGADDYVTKPFHIEEVLARVRALIRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  E GP+R+ +      V G    L   E R+L+YLM ++   V+++++   +Y  
Sbjct: 122 HATSELECGPLRLDTRTARVSVDGTPLKLTSHEYRLLDYLMHHQDSVVSRSELIEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  + +LRKK+    G D +++ R  GY +
Sbjct: 182 -DFDRDSNTIEVFVGRLRKKI----GIDLIETIRGQGYRL 216


>gi|104783258|ref|YP_609756.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
           entomophila L48]
 gi|95112245|emb|CAK16972.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
           entomophila L48]
          Length = 224

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       ++G  ++  ++      L      D+  ++  L        
Sbjct: 3   LLIIEDEPRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYDLVILDVNLPE--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            + + +RA S   ++ ++ +  L   +   D G DD + KP    E+LAR+ ++ RR   
Sbjct: 61  GVLQRLRAESSTRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  +  +   + +          G+   L  +E  +L  LM   G+ +++TQI S ++ 
Sbjct: 121 HLQPSTLKVADLELDPGRHRAWRGGQRIDLTAKEFALLHLLMRQSGEVLSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFEDKLIHTLRGVGYVLE 221


>gi|90419141|ref|ZP_01227052.1| DNA-binding two-compenent response regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337221|gb|EAS50926.1| DNA-binding two-compenent response regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 224

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +    +      G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   ILVVEDDQTLNRQLVEALNGAGYVVDKAMDGEEGHFLGDTEPYDAVVLDVGLPLMDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  R  R    +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 63  LE--RWRRDGRTMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      + G    L   E R+L+YLM ++ + V++T++   +Y 
Sbjct: 121 GHASSEIHCGPLRLDTRAARVTLDGTALKLTSHEYRLLDYLMHHQDQIVSRTELIEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL    G + +++ R  GY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL---GGAELIETVRGQGYRM 217


>gi|15895700|ref|NP_349049.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025451|gb|AAK80389.1|AE007743_11 Response regulator (CheY-like domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325509850|gb|ADZ21486.1| Response regulator (CheY-like domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 224

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 103/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++   A    +G S+    + + +E L+   R  +S +   ++       
Sbjct: 5   ILIVEDEDRMRELIKAYLRREGYSV--LEAADGKEALEMFDRNSISLVILDIMLPLLDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++        L  ++ G DD V KP   + + A+V  + +R++ 
Sbjct: 63  TVCTNIREKSEVPIIMLTAKSEEDDKLLGYELGADDYVTKPCSPKVLTAKVKVLLKRIQP 122

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +       +++ +   +  ++ +   L  +E  +L Y   N+G  + + +I   ++G
Sbjct: 123 NEKSKVQNFDGLKIDAISHEVTIEDKEIYLSPKEYDLLIYFSNNKGITLTRDKILDNVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D   +   V++H+ +LR+KL++K     V + R  GY  + 
Sbjct: 183 E-DYYGDLRTVDTHVKRLREKLQDKAY--LVATVRGSGYKFEV 222


>gi|150016986|ref|YP_001309240.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903451|gb|ABR34284.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 234

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 100/230 (43%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + DG      + G ++  + +    E L+    + +      ++      + 
Sbjct: 7   LIVEDEKEICDGIEIYLKNQGYNV--YRASNGIEGLEIIENQTLHLAIVDIMMPKMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   +R +   P+I ++        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  MVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSKY 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +  +N    G + + +D ++  + GE+  +   E +IL+ LM N G+  +  +
Sbjct: 125 LSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   +EA+  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 185 IYEKVWN--EEAINTDTVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIE 232


>gi|303242269|ref|ZP_07328756.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590179|gb|EFL59940.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  +E   + +  + L  S +ED + I   L+       
Sbjct: 5   ILIVEDEVTIAELQRDYLEISGYDVEIEKTGD--KGLSRSLKEDFNLIILDLMLPNIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 63  EICRKIRESKNIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVTAHISRYER 122

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  D R   ++ +   L  +E  +L ++  N  +  ++ ++F
Sbjct: 123 LIGSKEKKTETVNIRNLIIDKDSRRVWLENQEITLTGKEFDLLLFMAENPNRVFSREELF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+G+ D   + + V  HI K+R+K+  +      +++   +GY  
Sbjct: 183 DNIWGM-DACGDISTVTVHIKKVREKIELDNSKPQYIETIWGIGYRF 228


>gi|326316348|ref|YP_004234020.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373184|gb|ADX45453.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 232

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            ++++D   + D  +      G   E            +     D++ ++  L   G   
Sbjct: 8   ILVVEDEPDIADVVLDYLRHSGFEAEHVADGHAAIARLTGPTPPDLTLLDIMLP--GMDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R  R  +  P+I ++        L   + G DD + KP   RE++ARV  + RR  
Sbjct: 66  LEVLRQARRRTDRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVLRRST 125

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +  A+  P+ +        ++G    L  RE R+L+ L ++ G+  ++ Q+    Y 
Sbjct: 126 ARPSPAAQDAPLVLDEAFWQVHLRGTPVSLTPREFRLLQALASHSGRIFSRAQLLDMAYD 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
                V E  ++SHI  LR+KLR   G D   + S   +G+S++
Sbjct: 186 DT-LDVNERAIDSHIKNLRRKLRAADGSDHEWIRSVYGVGFSLE 228


>gi|218233154|ref|YP_002369467.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229048376|ref|ZP_04193944.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
 gi|229152869|ref|ZP_04281052.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
 gi|218161111|gb|ACK61103.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228630689|gb|EEK87335.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
 gi|228723101|gb|EEL74478.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
          Length = 229

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    LQ++ +ED   I   ++       
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGEI--GLQTALQEDYDLIILDIMLPKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|159184556|ref|NP_353994.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159139861|gb|AAK86779.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 223

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGLPQ--LDGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    RA    +P++ ++        +   D+G DD V KP H  E+LARV A+ RR  
Sbjct: 61  TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSELVCGPVRLDTKSSKATVNGTTLKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKI----GVDLIETIRGLGYRM 216


>gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550]
 gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 228

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMP--GMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|225352746|ref|ZP_03743769.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156353|gb|EEG69922.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 243

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+      D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGLTVEDENGEKHKVAPLIETKRGIGYMI 238


>gi|168178452|ref|ZP_02613116.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182671490|gb|EDT83464.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 228

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +  + + +  E ++     D+  I   L+       
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKV--YCTTKGLEGIEIFKSIDIKLIILDLMLPDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL  
Sbjct: 62  EVCRIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N+ +    + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I
Sbjct: 122 YNSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|10802733|gb|AAG23588.1|AF244639_1 DNA-binding response regulator [Carboxydothermus hydrogenoformans]
          Length = 206

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 11/184 (5%)

Query: 45  DVSAIEAFLIGKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
           D+  ++  L   G   LE+ + IR     +++P+I +S        +   + G DD + K
Sbjct: 21  DLVILDIMLP--GMSGLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVK 78

Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD----PEVQGEVFPLPRRERRIL 157
           P   RE++ARV A  RRL+    + E                  V+G+      +E  +L
Sbjct: 79  PFSPRELVARVKARLRRLEGREGKKEGIIKIKDIVIDQEKFAVYVKGKKMDFTPKEFELL 138

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFL 216
           + L +N GK   +  +   I+G ++   +   V+ HI  +R+K+ +       +++ R +
Sbjct: 139 KLLASNPGKVFTREYLLEKIWG-YEFLGDTRTVDVHIRHIRQKIEDNPADPVYIETVRGV 197

Query: 217 GYSI 220
           GY  
Sbjct: 198 GYRF 201


>gi|24114327|ref|NP_708837.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a
           str. 301]
 gi|30064375|ref|NP_838546.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a
           str. 2457T]
 gi|24053488|gb|AAN44544.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|30042632|gb|AAP18356.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|281602412|gb|ADA75396.1| Two component transcriptional regulator, winged helix family
           precursor [Shigella flexneri 2002017]
 gi|313648139|gb|EFS12585.1| transcriptional regulatory protein qseB [Shigella flexneri 2a str.
           2457T]
 gi|332998724|gb|EGK18320.1| transcriptional regulatory protein qseB [Shigella flexneri VA-6]
 gi|332999777|gb|EGK19361.1| transcriptional regulatory protein qseB [Shigella flexneri K-272]
 gi|333014732|gb|EGK34077.1| transcriptional regulatory protein qseB [Shigella flexneri K-304]
 gi|333015645|gb|EGK34984.1| transcriptional regulatory protein qseB [Shigella flexneri K-227]
          Length = 219

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|326442416|ref|ZP_08217150.1| putative two-component systen response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 342

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G + E             S R D+  ++  +       L
Sbjct: 109 ILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPR--MDGL 166

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 167 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 226

Query: 121 VSN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            ++                   +R+    R+         L R E  +LE L+A+  + +
Sbjct: 227 YASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVL 286

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + QI  +++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 287 TREQILKSVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRIVHTVRGVGYVL 337


>gi|259503210|ref|ZP_05746112.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
           antri DSM 16041]
 gi|259168802|gb|EEW53297.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
           antri DSM 16041]
          Length = 226

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    I     +G  +           L       +  ++  L   G   L
Sbjct: 6   ILLVEDEESLASFMITELELEGYEVIWAKDGREALTLFEKTHVTLILLDWMLP--GYDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I I+            D G+DD + KP    E+LAR+  I RR+  
Sbjct: 64  TVLRRIRQTSDVPVIMITARSQTADIRLALDQGLDDYITKPFEIEELLARIRVILRRINR 123

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP  +        V G    L  +E  ++  LM + G   ++  + + I+
Sbjct: 124 EQTLPGGYAFGPFNLDLLRHRFSVAGREIHLTPKEFALMAALMKDPGIVKSRDDLLNQIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D A + N V+ +I  LR KL +    + + + R +GY +
Sbjct: 184 G-YDFAGQTNTVDVYIRALRNKLGDY--RNLIRTVRGVGYVL 222


>gi|256380300|ref|YP_003103960.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924603|gb|ACU40114.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 261

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G                   + D+  ++  L   G   ++
Sbjct: 42  LVVDDDPALAEMLTIVLRGEGFDTAVVADGARALPALRELKPDLVLLDLMLP--GMNGID 99

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR+ S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR +  
Sbjct: 100 VCKAIRSESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARMRRTEAE 159

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G + +   G +   +G    L   E  +L  L     +   +  +   ++G +
Sbjct: 160 PAEVLQIGDLTIDVPGHEVLREGRPIQLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 218

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+ R+    + V + R +GY 
Sbjct: 219 RHAADTRLVNVHVQRLRSKVERDPEHPEVVLTVRGVGYK 257


>gi|255531250|ref|YP_003091622.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255344234|gb|ACU03560.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 227

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L +D   + D   +   + G  +   +  + ++ L+S        +   ++  G   +
Sbjct: 4   IALAEDDPKIADLIKSGLEEQGYEIT--SIADGQQALESFGINHFDLVILDIMMPGLNGI 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL R +R+ H  +P++ ++   ++   +    +G DD + KP H +E+LAR+ A+ RR  
Sbjct: 62  ELCRQLRSSHKNLPILMLTALSTVDDKVMGLKAGADDYLAKPFHFKELLARIEALLRRYS 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K   +      I + +  ++ +  G    L  +E  +LE  + N  + +++  I 
Sbjct: 122 TGTIQKQHQHELTFENITLNTYSKEVKRAGINIELTAKEFTLLELFLRNPNRLLSRQYIA 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + + +     NV++ +++ LR K+        + +K  +GY +
Sbjct: 182 ENAWDI-NFDTGTNVIDVYVNFLRNKIEKGFDRKVIHTKINMGYIL 226


>gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 248

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +    +             D   ++  L       LE
Sbjct: 26  LVVDDEPNLTELLGMALRYEGWEVRAAATGMQAVRAAREFDPDAVVLDMMLPDF--DGLE 83

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R +R  +  VP++ ++   +++  +    +G DD V KP    E++ARV A+ RR   
Sbjct: 84  VLRRMRTDNPNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALMRRTTM 143

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S++    G + +  D  +    GE   L   E  +L YLM N  + ++K QI   +
Sbjct: 144 SVSSSDSVLVVGDLTLDEDSHEVYRAGEEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+    G DP + + R  GY +
Sbjct: 204 WN-YDFGGQANVVELYISYLRKKVDA--GRDPMIHTMRGAGYVL 244


>gi|209544812|ref|YP_002277041.1| two component transcriptional regulator PhoB, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532489|gb|ACI52426.1| two component transcriptional regulator PhoB, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 243

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +      E      +  R D+  ++  L   G   L
Sbjct: 20  ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLP--GLSGL 77

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R +R   A   +P+I ++        +   D G DD V KP     + AR+ A+ RR
Sbjct: 78  DVCRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRR 137

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + + +     E  G    L   E RILE+ + +  +  ++  +   ++
Sbjct: 138 APPAEQMLSFADVTLDTVAHRAERNGRQLTLGPTEYRILEFFLRHPRQVFSREDLLQRVW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                 VE   V+ HI +LR  L      D V + R  GY++D
Sbjct: 198 ERG-VHVEPRTVDVHIRRLRLILNGPGEADIVRTVRAAGYALD 239


>gi|83642976|ref|YP_431411.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631019|gb|ABC26986.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 222

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   +     +       +   D+  ++  L   G   L
Sbjct: 6   ILIVEDEPKLASLLKDYLQQEGYQCDIIGDGQQALERIRAEAPDLILLDLMLP--GLDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R  R  +  P+I ++        L   + G DD V KP   RE++ARV AI RR++ 
Sbjct: 64  SVCREARRFTDAPIIMVTARVEEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRVRG 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    E   + +        ++G+   L   E ++L+ L    G+  +++Q+   IY   
Sbjct: 124 AP--VEERALMLDPSRYRAVLRGKPLELTAIEFQLLKILADEPGRIFSRSQLMDGIY-QD 180

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              V +  V+SHI KLRKK+       D + S   LGY  +
Sbjct: 181 HRIVSDRTVDSHIKKLRKKMTELFPDQDYIHSVYGLGYKYE 221


>gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 231

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G   E   +      +    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKVIREIKFDLILLDLMLPE--IDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A+ RR 
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   N  + G + V    R+     +   L  +E  +L+ L+ N+G  + +  +   I
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|34762634|ref|ZP_00143627.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237741605|ref|ZP_04572086.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
 gi|256844930|ref|ZP_05550388.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294785787|ref|ZP_06751075.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
 gi|27887714|gb|EAA24790.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229429253|gb|EEO39465.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
 gi|256718489|gb|EEU32044.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294487501|gb|EFG34863.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
          Length = 224

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 99/224 (44%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  S++     E           D+  ++  L        
Sbjct: 3   ILVVEDEKDLNNIITKNLKKNNFSVDSVYDGEEALKYSDYGNYDLILLDVMLP--KMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +RA+     ++ ++   +++  +   D G DD + KP    E+LAR+ AI RR  
Sbjct: 61  EVVKHLRANKNETAVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIIRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  +   + V +  +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++ 
Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +    E N+++  I  +RKK+        + +KR LGY +  +
Sbjct: 181 -YAYEGESNIIDVLIKNIRKKIDLGDSKPLIHTKRGLGYVLKED 223


>gi|319442731|ref|ZP_07991887.1| two-component system response regulator TcsR5 [Corynebacterium
           variabile DSM 44702]
          Length = 231

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G  +      E  + L      D+  ++  L       L
Sbjct: 3   ILVVDDDRSVRDTLRQSLTFNGYDVVQATDGEEAQTLIGKENPDLVIMDGILPKV--DGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R + S+V ++ +S    +   +   D+G DD + KP    E+LARV ++YRR +
Sbjct: 61  EILRSLRGSGSEVLVLMLSQKSDVADRVAGLDAGADDYLTKPFALEELLARVRSLYRRSR 120

Query: 121 VS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +       +       + +  + R+         L R E  +LE L+ N  K +++  I
Sbjct: 121 RTAAAVAKDSKPLSFLDLTLNPETREVTRDERRISLTRTEFALLELLLRNARKVLSRNTI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              ++G +D     N +E +I  LR+K   +     + + R +GY +  N
Sbjct: 181 LEEVWG-YDFPTSGNALEVYIGYLRRKTEAEGEDRLIHTVRGVGYVLREN 229


>gi|301056178|ref|YP_003794389.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378347|gb|ADK07251.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 229

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    LQ + +ED + I   ++       
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGET--GLQMALQEDYNLIILDIMLPKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|284029587|ref|YP_003379518.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283808880|gb|ADB30719.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  ++G   + +     ++ + +        +   L+  G   +
Sbjct: 5   ILIVDDDTALSEMLSIVLRNEGY--DTYLCATGDKAVPAFREFKPDLLLLDLMLPGMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           ++ R IRA S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR+ +
Sbjct: 63  DVCRAIRAESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARLRRMDE 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +   G   +  GE   L   E  +L  L +   +   +  +   ++G 
Sbjct: 123 PGPESLTIGDLTIDVAGHSVKRSGETIQLTPLEFDLLVCLASKPWQVFTREVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
           +  A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 182 YRHAADTRLVNVHVQRLRSKIEKDPEHPEIVVTVRGVGYK 221


>gi|328883264|emb|CCA56503.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 233

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 29/236 (12%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++        DG  +    +G + L+         R D++ ++  L   G 
Sbjct: 7   LFVEDDDVIREATQLALERDGFRVTAMPDGLSGLDAFRAQ----RPDIALLDVMLP--GM 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 61  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLMARIRAVLRR 120

Query: 119 LKVSNNR--------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
              +                    G + V ++G +    G    L   E R+L    +  
Sbjct: 121 FGHAGGPGAGEHGEETPDGGLLAFGDLEVDTEGMEVRKAGAPVALTPTEMRLLLEFSSAP 180

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 181 GTVLSRDKLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 231


>gi|302387482|ref|YP_003823304.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198110|gb|ADL05681.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 231

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +  S++  +     + L    + D   I   ++  G    
Sbjct: 5   ILVIDDDKELCALIKQSVAVE--SIDADHCYSGTDGLAMLQKNDYQLILLDVMMPGLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP++ ++      + +    SG DD + KP    E++ARV ++ RR   
Sbjct: 63  QTMEKIRQKSSVPILMLTSKNDSTSKIRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       + +  D R    Q   F LP +E  +L +   N+GK + K QI+ 
Sbjct: 123 FNTTGDHSQPLTYQGLTIDMDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            ++G      + N + + IS+LRKK+ +       + + + +GY  +
Sbjct: 183 EVWGESYVYDDSN-IMAIISRLRKKIESDSSAPYYIQTVKGIGYRFN 228


>gi|255100490|ref|ZP_05329467.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306432|ref|ZP_05350603.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 241

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 103/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +  G       +G S++    L   + + SS    +  ++  L        
Sbjct: 11  LLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTLPD--GTGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  SQVP+I ++        +   D G DD + KP   RE+++R+ A+ RR   
Sbjct: 69  ELCQYIRGFSQVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKGN 128

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       + G + +++         +   L   E ++L  L+ N+   +++TQI   +
Sbjct: 129 TSEENKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEKL 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
           + +  + V +N +  +I +LR+K+ + L     +++ R +GY 
Sbjct: 189 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYK 231


>gi|223983749|ref|ZP_03633920.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
 gi|223964295|gb|EEF68636.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
          Length = 230

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       + G ++   ++ +      ++ + DV  ++  L        
Sbjct: 4   ILIVDDNESICNILYHYGKEAGYTMVIAHTGQEGLTYFTNYKPDVILLDVMLPD--IDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S+VP++ I+   + Q  +   D G DD + KP   +E++AR+ A+ RR + 
Sbjct: 62  EVCQCIRKVSRVPILMITAKTADQDRVMGLDIGADDYILKPFSCQEVMARIRAVLRRTED 121

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +A+   G + +        + G    L ++E  +L  L ++ G+  ++  +   ++G
Sbjct: 122 NPEQADFVYGNLMIQESRNLVSLDGNPINLTKKEMELLVLLASHPGRVYSREILLDLVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              E+ +   V+S + +LR KL         + +   +GYS 
Sbjct: 182 YSGESYD-RAVDSCVKRLRAKLDEYPHPCFSIKTIWGVGYSF 222


>gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
 gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
          Length = 253

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +   +           +  D+  ++  +        
Sbjct: 16  ILVVDDEASIRRILETRLSMIGYQVVTASDGMEALECFRESHPDLVVLDVMMP--KLDGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 74  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 133

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++     G +R+ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 134 EQVAGIPNSGVITVGDLRIDTNKRQVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 193

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 194 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 239


>gi|325838529|ref|ZP_08166551.1| putative transcriptional regulatory protein CssR [Turicibacter sp.
           HGF1]
 gi|325490824|gb|EGC93126.1| putative transcriptional regulatory protein CssR [Turicibacter sp.
           HGF1]
          Length = 230

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 8/226 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +IDD A ++   +     +G  +  F + E      +  + D   ++  + G     L+L
Sbjct: 6   VIDDDANIRQLILRYLEKEGYKVTAFENAEHVFEAFNMLQPDALVLDIMMPGT-MDGLDL 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121
            + IR  SQVP+I +S        +   + G DD ++KP   RE+L R+  I+RR++   
Sbjct: 65  CKKIRTVSQVPIIFVSAKDEAVDRIIGLELGADDYLSKPFSPRELLVRLKIIFRRIEPVM 124

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   +++    R   V+ +   L   E  +L YL+ N+     +  +   I
Sbjct: 125 VSDHETTTYQIKDLKIDDSKRVCSVKDKELSLTNNEYMLLAYLVKNKNISFTRENLIQNI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   E  +++  + +LRKKL++      + +    GY ID N
Sbjct: 185 WG-YDYVGESRMIDDLVKRLRKKLKSFDAQVEITTVWGYGYRIDDN 229


>gi|229000557|ref|ZP_04160100.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
 gi|229003857|ref|ZP_04161665.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228757365|gb|EEM06602.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228759200|gb|EEM08203.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
          Length = 228

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++   +  +  E ++   ++    I   ++       
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQQYAVTVAS--DGLEGMKQFNKQSFDLILLDVMMPNLNGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 71  EVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + N      I V  D     +     PL  +E  IL+ L+ N+ K + +  I   ++G
Sbjct: 131 QSTENHLFFKEIHVDCDAYKVYINELEIPLTAKEFEILQLLLQNKKKVITRESIVEKVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   E  ++++HI  +RKKL        + + + +GY ID
Sbjct: 191 -YEYHGETRMIDTHIKNIRKKLD----ISYIKTVKGIGYKID 227


>gi|227327067|ref|ZP_03831091.1| DNA-binding transcriptional regulator PhoP [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
 gi|301069182|dbj|BAJ11970.1| response regulator PehR [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++  +  +  ++       D++ ++  L    E  +
Sbjct: 3   ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGLPD--EDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R  RAH  ++P++ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIRRWRAHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    R+  + G    L   E  I+E L+ N+GK V+K  +   +Y 
Sbjct: 121 GLASQVISLPPFEIDLSRRELVIHGGPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK++     D + + R  GY  D
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQAEAPDVITTVRGQGYRFD 221


>gi|297583783|ref|YP_003699563.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142240|gb|ADH98997.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 233

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 99/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + D       D+G  +++  N  E  + + +  + D+  ++  +       
Sbjct: 8   ILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLD-IVNQRKVDLVLLDVMMPE--MDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R +R   ++P+I ++        ++   SG DD + KP   +E+LAR+ A  RR  
Sbjct: 65  MEALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRNY 124

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N        +   I+V  + R   + GE   L R+E  +L + M +  +   + Q+  
Sbjct: 125 GYNDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G+         V++H+  +R K+ +  G D   +   +GY ++
Sbjct: 185 HVWGVNYTTGGHRTVDTHMKTMRFKMGS--GGDYFRTVYGVGYVLE 228


>gi|30022740|ref|NP_834371.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229129950|ref|ZP_04258916.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
 gi|29898299|gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228653641|gb|EEL09513.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|256390005|ref|YP_003111569.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356231|gb|ACU69728.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 225

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A ++          G  +    S E       + R D+  ++  L   G    
Sbjct: 4   LLLVEDDAAIRTALQLALTRQGHQVAVAASGEEALATYKTVRPDLIVLDVMLP--GVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E+ R IR   Q+P+I ++        +   +SG DD V KP+  R + AR+ A+ RR  +
Sbjct: 62  EVCRQIRRTEQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRGER 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++ A  G + V          G   PL   E +++  L  + G+ +++ Q+   ++  
Sbjct: 122 ETSDVAVYGDLTVDRSAMTVSKHGTAIPLTPTELKLVMELSRHAGQALSRQQLLRLVW-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            D   +  +V++ + +LR K+ +       + + R +GY +D
Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPAEPTLIKTVRGVGYRLD 222


>gi|212712838|ref|ZP_03320966.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM
           30120]
 gi|212684530|gb|EEB44058.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM
           30120]
          Length = 224

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  ++     +  ++  + +  D++ ++  L    E  L
Sbjct: 3   ILIVEDNALLRHHLTVQLKELGHQVDSAEGAKEADYFLNESHPDIAVVDLGLPD--EDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +  R+ H  +PL+ ++   S Q  +   +SG DD V KP    E++AR+ A+ RR  
Sbjct: 61  SMIKRWRSNHVSIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E     +    ++  V GE   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKK++     + + + R  GY  D N
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQFHAQEVIVTVRGQGYRFDVN 223


>gi|229158434|ref|ZP_04286496.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228625041|gb|EEK81806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL YLM N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|182416578|ref|ZP_02947999.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237667380|ref|ZP_04527364.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379575|gb|EDT77058.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237655728|gb|EEP53284.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 232

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 89/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G   E   +         +   D+  ++  L   G+   
Sbjct: 4   ILIVEDDKSIAELEQDYLEINGFKAEIALTGVSGLEKAINKEYDLILLDVMLP--GKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR   ++P++ ++        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICQEIRKVKEIPILLVTAKKDDIYIIRGLGIGADDYIVKPFSPSELVARVTAHMNRYER 121

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     S N    G + +  D R   +      L  +E  +L +L +N     +K 
Sbjct: 122 LTSMDKEHGKSQNIISIGRLSINCDSRRVYIGDTEIKLANKEFELLVFLASNPNIVFSKD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   I+G  +   + + V  HI+++R+K+  +      +++    GY  
Sbjct: 182 TLLDRIWGE-ESFGDTSTVTVHINRIREKIEIDTSNPQYIETVWGAGYRF 230


>gi|294499355|ref|YP_003563055.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349292|gb|ADE69621.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 227

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++   S +       +   D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKV--SGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P+I +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EVCKQIRAAKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +++ E        + + +  R   V  +      +E  +L++++++  + ++K  +F  
Sbjct: 122 LSDKQEKRMIRIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           I+G FD + + + V  HI KLR+KL  N      +++    GY  +
Sbjct: 182 IWG-FDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGYRFN 226


>gi|19554154|ref|NP_602156.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391809|ref|YP_227211.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|41327151|emb|CAF20995.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 240

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPE--LDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 133

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLITE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 237


>gi|16761953|ref|NP_457570.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16766477|ref|NP_462092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29143440|ref|NP_806782.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56415118|ref|YP_152193.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|167551911|ref|ZP_02345664.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990273|ref|ZP_02571373.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231775|ref|ZP_02656833.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238132|ref|ZP_02663190.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243002|ref|ZP_02667934.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262866|ref|ZP_02684839.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463615|ref|ZP_02697532.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819761|ref|ZP_02831761.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445795|ref|YP_002042442.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194449190|ref|YP_002047173.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194472187|ref|ZP_03078171.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736474|ref|YP_002116131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197247614|ref|YP_002148104.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262224|ref|ZP_03162298.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364047|ref|YP_002143684.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198242500|ref|YP_002217155.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387607|ref|ZP_03214219.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928260|ref|ZP_03219460.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207858436|ref|YP_002245087.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213027201|ref|ZP_03341648.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213052528|ref|ZP_03345406.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213420412|ref|ZP_03353478.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213424348|ref|ZP_03357172.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581572|ref|ZP_03363398.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213614424|ref|ZP_03371250.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213647443|ref|ZP_03377496.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855234|ref|ZP_03383474.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289827112|ref|ZP_06545901.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|291080733|ref|ZP_06534499.2| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|54038991|sp|P66796|QSEB_SALTI RecName: Full=Transcriptional regulatory protein qseB
 gi|54041930|sp|P66795|QSEB_SALTY RecName: Full=Transcriptional regulatory protein qseB
 gi|25300979|pir||AI0888 probable two-component system response regulator. STY3354
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16421733|gb|AAL22051.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504255|emb|CAD03009.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139074|gb|AAO70642.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56129375|gb|AAV78881.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194404458|gb|ACF64680.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407494|gb|ACF67713.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458551|gb|EDX47390.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711976|gb|ACF91197.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633180|gb|EDX51594.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095524|emb|CAR61089.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197211317|gb|ACH48714.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240479|gb|EDY23099.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289042|gb|EDY28413.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937016|gb|ACH74349.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604705|gb|EDZ03250.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204322582|gb|EDZ07779.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205323364|gb|EDZ11203.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331169|gb|EDZ17933.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333781|gb|EDZ20545.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337837|gb|EDZ24601.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343562|gb|EDZ30326.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348552|gb|EDZ35183.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710239|emb|CAR34596.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261248307|emb|CBG26144.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|301159731|emb|CBW19250.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914202|dbj|BAJ38176.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087628|emb|CBY97392.1| Transcriptional regulatory protein qseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225855|gb|EFX50909.1| Two-component system response regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322613580|gb|EFY10521.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621172|gb|EFY18030.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624235|gb|EFY21069.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628027|gb|EFY24816.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633144|gb|EFY29886.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636278|gb|EFY32986.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643531|gb|EFY40092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647452|gb|EFY43941.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648637|gb|EFY45084.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653689|gb|EFY50015.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657797|gb|EFY54065.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663898|gb|EFY60097.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669089|gb|EFY65240.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672916|gb|EFY69023.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678093|gb|EFY74156.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681269|gb|EFY77302.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687800|gb|EFY83767.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323131537|gb|ADX18967.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323195612|gb|EFZ80789.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199706|gb|EFZ84796.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202545|gb|EFZ87585.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207966|gb|EFZ92912.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212482|gb|EFZ97299.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215036|gb|EFZ99784.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222766|gb|EGA07131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224152|gb|EGA08445.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230476|gb|EGA14594.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235172|gb|EGA19258.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239212|gb|EGA23262.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244430|gb|EGA28436.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247046|gb|EGA31012.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253472|gb|EGA37301.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256222|gb|EGA39958.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262603|gb|EGA46159.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267302|gb|EGA50786.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269295|gb|EGA52750.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326624931|gb|EGE31276.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|332990043|gb|AEF09026.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 219

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R  R    Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 181 -WDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 216


>gi|237752748|ref|ZP_04583228.1| phosphate regulon response regulator PhoB [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376237|gb|EEO26328.1| phosphate regulon response regulator PhoB [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 221

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D   + +  +       +  +GF  +E  +    +       ++  L       
Sbjct: 1   MVFVLEDDTNILELVLYALKSQHIQSQGFLEVETFKEALKTTTPQALVLDVMLPNA--SG 58

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            ++ + I+ +     +P++ ++   +    +   D G DD + KP    E LARV AI R
Sbjct: 59  FDILKNIKTNPATQGIPVLMLTALNNEFDKVKGLDLGADDYITKPFSVMEFLARVRAILR 118

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R K S+     G +      R  +V GE   L  +E  +L +L+ N+ +  ++ ++   +
Sbjct: 119 RNKESD-TICYGILEFSYTTRSVKVCGEPIMLTLKEFELLGFLLKNQNRAFSRDELLEIL 177

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +  + E   ++ HI  LRKKL +      + + R +GY I
Sbjct: 178 WG-YSYSGESRTIDIHIKTLRKKLGSA--SKYIQTIRGIGYKI 217


>gi|239617104|ref|YP_002940426.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505935|gb|ACR79422.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 226

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +  ++   NS         +   D+  ++  L       L
Sbjct: 3   ILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDA--SGL 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + + R + ++P+I ++   S    +   + G DD + KP + R ++AR+ A+ RR +
Sbjct: 61  DVIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYE 120

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     N  + G I +  +       G+   LPR+E  +L+ ++ N GK   + +I   +
Sbjct: 121 MGPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G+ D   +   V+ HISKLR+K+    G + + + R +GY +
Sbjct: 181 WGM-DFFGDFRTVDVHISKLREKI----GSEFIKTVRGVGYKL 218


>gi|82545283|ref|YP_409230.1| DNA-binding transcriptional regulator QseB [Shigella boydii Sb227]
 gi|81246694|gb|ABB67402.1| QseB [Shigella boydii Sb227]
 gi|332092043|gb|EGI97121.1| transcriptional regulatory protein qseB [Shigella boydii 3594-74]
          Length = 219

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   +  E   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
 gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 628

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 107/225 (47%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A+       ++  N  +       S+  D+  ++  L       +
Sbjct: 3   ILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSYDLVLLDIELPL--LDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L   +R+H+ QVP++ ++   + Q  +   D+G DD + KP+   E+ AR+ A+ RR  
Sbjct: 61  SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +++      + + +   D    G+   +  +E  +LE LM +R +  +  +I   ++ 
Sbjct: 121 EGTSSVFTYEKMVLDTSTCDVTYNGKPIKVTPKEYGLLELLMGDRQRTYSIDKILDKLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
            FD+    N V +HI  LR+KL+    G + +++   LGY ++ N
Sbjct: 180 TFDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224



 Score = 86.1 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 5/131 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   +      L    G+                S+  D+  ++  +       +EL
Sbjct: 500 IVDDDPQMLAAIQTLLQPWGIQTITLGDPRQFWKTLESSHPDLLVLDIEMPH--LNGIEL 557

Query: 64  PRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +I+R   +   +P+I ++     Q     F +G DD + KP    E+  R+    +R +
Sbjct: 558 CQIVRNDPRWRGIPVIFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRTQ 617

Query: 121 VSNNRAETGPI 131
               R +    
Sbjct: 618 NLATRTDFAYH 628


>gi|225851211|ref|YP_002731445.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Persephonella marina EX-H1]
 gi|225646536|gb|ACO04722.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Persephonella marina EX-H1]
          Length = 228

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   + +  +     +G S+  F + +       S   D+  ++  L       
Sbjct: 3   LIYVVEDDEDINELLVYNLKKEGFSVRSFLNSKEAYRNIKSDYPDLIVLDIMLPD--MDG 60

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE  +++++      +P+I ++   +    +   + G DD V KP   RE++AR+ A+ +
Sbjct: 61  LEFCKLLKSDKDTEEIPIIMLTAKSTEIDKIVGLELGADDYVTKPFSIRELIARIKAVLK 120

Query: 118 RLKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R K S   +       + +     +  + G+   L  +E ++L  L+   GK + + QI 
Sbjct: 121 RSKRSFKKDKIIRIKDLEIDPLKIEVRIDGKNIDLTAKEFKLLLLLINAEGKVLTRDQIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           S+++   D  V +  ++ HI KLR KL   +    + + R  GY  + 
Sbjct: 181 SSVW-ENDLDVFDRTIDVHIKKLRDKLG--IYGRCIKTVRGAGYKWEC 225


>gi|254471900|ref|ZP_05085301.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211959102|gb|EEA94301.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 219

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 10/222 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59
           M ++ DDR L +        D G  ++     E   +L  +   D   ++  L    G  
Sbjct: 1   MLIVEDDRDLNRQ-LCEALEDAGYVVDKAYDGEEGHFLGDTEPYDAVILDLGLPQMDGLS 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           VLE  R  R    +P++ ++        +   D+G DD V KP H  E+LARV A+ RR 
Sbjct: 60  VLE--RWRRDGHSMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRA 117

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +++N    G I + +        G    L   E R+L YLM ++G+ +++T++   +Y
Sbjct: 118 AGLASNEISIGDIVLDTKAGKVTKNGMSVKLTSHEFRLLSYLMHHKGRVISRTELVEHLY 177

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D   + N +E  + +LRKK     G   +++ R LGY +
Sbjct: 178 DQ-DFDRDSNTIEVFVGRLRKK----FGSSLIETVRGLGYRL 214


>gi|75908165|ref|YP_322461.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701890|gb|ABA21566.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 238

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 23/236 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D + +          +G S     +G N+L   +        D+  ++  +   G
Sbjct: 3   ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALRMFQ----EQPPDLIILDLMIP--G 56

Query: 58  EKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              LE+   IR         ++ ++        +    +G DD + KP   RE++ARV A
Sbjct: 57  LDGLEVCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRA 116

Query: 115 IYRRL---KVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGK 166
           + RR       N  + T    V  D R         Q E   L   E  +L   ++N G+
Sbjct: 117 LLRRSLRQGGQNQVSRTQHFIVDVDQRTASRQIDAHQAEALDLTTLEFNLLSTFVSNPGR 176

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              +TQ+   ++G  +   +E VV++H+++LRKK+  +      + +   +GY  +
Sbjct: 177 VWNRTQLIDKLWG-DNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFE 231


>gi|107023057|ref|YP_621384.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116686702|ref|YP_839949.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|170735469|ref|YP_001774583.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|105893246|gb|ABF76411.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116652417|gb|ABK13056.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
 gi|169821507|gb|ACA96088.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
          Length = 225

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L    R DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLTLAQEERYDVIVLDVMLPV--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+  + RR   
Sbjct: 61  AVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETEHLAVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220


>gi|116493790|ref|YP_805524.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116103940|gb|ABJ69082.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 228

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   ++ ++  E    L +    D++ +   ++      
Sbjct: 3   ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVT--NPDIALMILDIMMPNMSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  SQ+P+I +S   +    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  MDVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 120

Query: 121 -----VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 NEVTNTEPDVLEGGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 787

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++    +        ++E     +       +   D+   +  L       +
Sbjct: 3   ILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLP--KLDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R++    P++ I+        +   D+G DD + KP++ RE+ ARV A+ RR  
Sbjct: 61  TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E G +R+     +     +V  L  +E  +LE L+ N  +  ++  I   ++ 
Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD+  +E  V+SHI  LR KL+     D +++   LGY +
Sbjct: 180 TFDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRL 220



 Score = 94.2 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD  L+      +    G+ + G +  L F E LQS+A  D+  ++  +       +
Sbjct: 503 LVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTA-PDLLILDVEMPH--ISGI 559

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL + +R      ++P++ ++ +  ++T    F +G DD V KP+   E+LAR+     R
Sbjct: 560 ELCQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLER 619

Query: 119 LKVSNNRAETGPIR 132
            ++  + +   P+ 
Sbjct: 620 SRLLQSLSTKDPLT 633



 Score = 38.3 bits (89), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LID    +      +    G+  +   +LE  +    +   D+  +    IG+ E+ L
Sbjct: 377 LLLIDPDLQLGSQLQQVAYSMGMRWQQITTLEAAKNFLQTTSPDLVVLNVDEIGQREETL 436

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
            L   +  H+  +P++ ++    L   +    SG    + KP+ 
Sbjct: 437 ALMVDLATHTPPIPVLALAVNDRLVDRVTLAQSGARGFLLKPVA 480


>gi|262067099|ref|ZP_06026711.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379153|gb|EFE86671.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
           ATCC 33693]
          Length = 224

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 103/225 (45%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +  S++  FN  E  E+L+     D+  ++  L       
Sbjct: 3   ILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLEY-GTYDLIVLDIMLP--KLNG 59

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
            E+ + +R +     ++ ++   S+   +   D G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  YEVVKKLRENKNETAVLMLTARDSIDDKIKGLDLGADDYLIKPFDFGELLARIRALVRRK 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N  E   + +    +     G+   L  +E  +LEYL+ N+G  +++ +I  +++
Sbjct: 120 YGNTSNTMEIDDLCIDIAKKTVVRAGKNIELTGKEYEVLEYLIQNKGHVLSRDKIRDSVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +    E N+++  I  +RKK+        + +KR LGY +  +
Sbjct: 180 D-YGYEGESNIIDVLIKNIRKKIDVGNSKPLIHTKRGLGYVLKED 223


>gi|229144519|ref|ZP_04272922.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
 gi|228638932|gb|EEK95359.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
          Length = 243

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 75  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  I   + A R +     +I
Sbjct: 135 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 195 YESVWNERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 242


>gi|209884019|ref|YP_002287876.1| DNA-binding response regulator [Oligotropha carboxidovorans OM5]
 gi|209872215|gb|ACI92011.1| DNA-binding response regulator [Oligotropha carboxidovorans OM5]
          Length = 220

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++          D  S++    L+       SA  D+  ++  L     + +
Sbjct: 3   ILLIEDDTILGAAVRDHVVADNHSVDWVTRLDAANDHLGSAAYDLILLDMMLPD--GQGI 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R + R     P+I ++    +   +   + G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TFLRDLRRKGCVTPVIIMTALDQISDRIQGLNVGADDYMTKPFDLSELLARLNAVGRRYS 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   + G +++    R     G    L  RE  +LE  + + G+ ++K Q+   +Y 
Sbjct: 121 GNPNPLVKIGDLQIDLAARTITRGGRPVNLTAREWALLEAFIQHPGQVLSKEQLEERLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F   VE N +E H+S++RKKL + +    V++ R +GY +
Sbjct: 180 AFGAEVESNTIEVHVSRMRKKLGSAI----VETVRGIGYRL 216


>gi|119897266|ref|YP_932479.1| two-component response regulatory protein [Azoarcus sp. BH72]
 gi|119669679|emb|CAL93592.1| probable two-component response regulatory protein [Azoarcus sp.
           BH72]
          Length = 228

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  ++ DG +      G +++   +    +   +S   D+  ++  L       +
Sbjct: 3   ILLAEDDPVIADGIVRALKRGGYAVDHVGNGAEADTAVASQPFDLLILDLGLPR--LPGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA  S +P++ ++    ++  +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLKRLRARKSALPVLILTAQDGVEDRVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G +      R  ++ G+V  L  RE  +LE  +   G+ V+K Q+   + G 
Sbjct: 121 GQPRCIEVGNLSYDQADRVVKICGQVVELSAREIGLLEVFILRVGRLVSKDQLVDHLCG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E V  N +E ++ +LRKKL        + + R LGY ++
Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEASG--VRIVTVRGLGYCLE 218


>gi|186471094|ref|YP_001862412.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197403|gb|ACC75366.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 223

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D  L+ DG  A     G+ ++        E    +     + ++  L    G  V
Sbjct: 3   ILLVEDDPLLGDGIRAGLRQAGLQVDWVRDGHAAETELRTRSYAAAVLDLGLPLKDGIDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R  RA   +P++ ++   ++   +   D G DD V KPI   E+ AR+ A+ RR  
Sbjct: 63  LSSVR--RAGVTMPVLVLTARDTVPDRVRGLDIGADDYVVKPIDLLELAARLRALVRRAH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                + E   + +    R     GE   +  RE  +L  LM N G+ +++ Q+  A+YG
Sbjct: 121 GQPQEKLEVQDVILEPAARLVYRNGEPVTVSTREFDLLYVLMLNAGRVMSREQLEQAMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   VE N VE HI +LR KL    G D + + R +GY +
Sbjct: 181 -WGREVESNTVEVHIHRLRAKL----GSDLIRTVRGVGYVL 216


>gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Frankia alni ACN14a]
 gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Frankia alni ACN14a]
          Length = 240

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 14/228 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D         G  +    +      L   AR D+  ++  L        E
Sbjct: 8   LVVDDEPNIVDLLRMALRFHGFDVLTAATGRSALQLAVQARPDLMILDVMLPDV--DGFE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R +RA  Q VP++ ++   + +  +     G DD V KP    E++ARV A+ RR   
Sbjct: 66  VCRTLRAGGQSVPVVYLTARDAHRDKIAGLTYGGDDYVTKPFAVDELVARVRAVLRRTSP 125

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             + +  D       GE   L   E  +L Y + N  + +++ Q
Sbjct: 126 PRPEPAPDPPATTLRFADVELDPDTHVVRRAGEPIELSPTEFTLLRYFLTNPNRVLSRVQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I  A++  +D A E  VV+ ++S LR+KL    G   + ++R  GY++
Sbjct: 186 ILDAVW-SYDFAGEPTVVDQYVSYLRRKLGRH-GPSLIHTQRGFGYAL 231


>gi|306842746|ref|ZP_07475388.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO2]
 gi|306287090|gb|EFM58595.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO2]
          Length = 181

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 8/182 (4%)

Query: 44  EDVSAIEAFLIGKGEKVLELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVN 100
            D+  ++  L   G   +EL R +R   +    P+I ++        +     G DD V 
Sbjct: 2   PDLLILDWMLP--GVSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVV 59

Query: 101 KPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           KP    E+LARV A+ RR   S  ++  + G + +         + +   L   E R+LE
Sbjct: 60  KPFSTPELLARVKAMLRRANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLE 119

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           Y M + G+  +++Q+   ++G  D  V++  V+ H+ +LRK +      DP+ + R  GY
Sbjct: 120 YFMMSPGRVFSRSQLLDGVWGP-DIYVDDRTVDVHVGRLRKAINVGRAADPIRTVRGAGY 178

Query: 219 SI 220
           S 
Sbjct: 179 SF 180


>gi|229147384|ref|ZP_04275733.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296505274|ref|YP_003666974.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228636066|gb|EEK92547.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296326326|gb|ADH09254.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|227513408|ref|ZP_03943457.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524551|ref|ZP_03954600.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227083281|gb|EEI18593.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227088226|gb|EEI23538.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 231

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 96/225 (42%), Gaps = 4/225 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +  ++      +       S R  ++ I    +      L
Sbjct: 5   ILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPKLDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR +  +P++ ++    +   +   D+G DD + KP    E+LAR+  + R  + 
Sbjct: 65  EVLRRIRQNDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLRHSQN 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++      + + +  R       +  L +RE  +L  L+ N G+ + + ++ + ++
Sbjct: 125 QATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYELLLTLIKNAGETMTRDELLNLVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G+ D   + NVV+ +I  LR K+        + + R +GY +  N
Sbjct: 185 GV-DFEGQPNVVDVYIRYLRNKVDRNFKKTLIHTVRGVGYVLSAN 228


>gi|295105634|emb|CBL03178.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 228

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D A +++        +G  ++GF S E       +A  ++  ++  L   GE  
Sbjct: 1   MIYIVEDDASIRELEQYALQSNGYEVQGFESAEPFWQAMRAAEPELVILDVMLP--GEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             + + +R      ++P+I ++   S   T+   D G DD + KP    E L+RV    R
Sbjct: 59  FSILKKLRNTPSLRKLPIIMVTAKSSELDTVRGLDCGADDYIAKPFGIMEFLSRVRVALR 118

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   +V  +      I++ +      V      L  +E  +L  L+ N    V +  I  
Sbjct: 119 RSAPEVRPDVLVFHEIQLDNARHSVTVNSTPVELTYKEYCLLRLLLENTSLVVTRETILQ 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D +VE   V+ HI  LRKKL +      + + R +GY +
Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAG--RYICTVRKVGYKL 220


>gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 235

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   V         ++G  +           L  +   D+  ++  L       L
Sbjct: 4   IILIEDETSVVSFIKKGLQENGYEISVAFDGRTGVQLVQANDFDLVILDIMLPE--MNGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  +Q VP++ ++   + +  +   +SG DD + KP    E++ARV ++ RR  
Sbjct: 62  DVCKEIRKTNQSVPILFLTALGTSENIVLGLESGGDDYLVKPFKFIELVARVKSLLRRSN 121

Query: 121 V------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                        + +  +   + V    +     GE   L   E ++L Y + N  K +
Sbjct: 122 NNGPQEIAEPEPDNEHVFQFSDLIVNDYTKKVTRGGEEISLTSTEYKLLLYFLNNPEKVI 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +I  A++G+  E    NVV+ +++ LRKKL N+     + +   +GY +
Sbjct: 182 SRAEILDAVWGVNYELG-TNVVDVYVNYLRKKLDNQEDNKLIHTVIGMGYVL 232


>gi|293381660|ref|ZP_06627641.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|290921707|gb|EFD98728.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
          Length = 242

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 105/235 (44%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEK 59
            ++++D   V +     F  +G   +   + +E  +  + +A + D+  ++  L  K   
Sbjct: 7   ILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKK--D 64

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR
Sbjct: 65  GIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRR 124

Query: 119 LKVSNN-----------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGK 166
           + +                 T  +++  + R+     +    L  +E  +L  +     +
Sbjct: 125 VMMEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQ 184

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 185 VFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 237


>gi|238918470|ref|YP_002931984.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri
           93-146]
 gi|238868038|gb|ACR67749.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri
           93-146]
          Length = 219

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G +++ F   +       SA  D   ++  L   G   LE
Sbjct: 4   LLIEDDRLIGDGIKAGLSKMGFTVDWFTDGQQGMTALDSAPYDAVILDLSLP--GIDGLE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R  R      P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  ILRCWREAGHAEPVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIRRNHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +        + G   PL  +E  +LE L+ N G+ + ++ I   +Y  
Sbjct: 122 QAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D+ V  N VE HI  LR+KL +      + +   +GY++
Sbjct: 181 WDDEVSSNAVEVHIHHLRRKLGSHF----IRTVHGVGYTL 216


>gi|229178308|ref|ZP_04305678.1| Two-component response regulator vanR [Bacillus cereus 172560W]
 gi|228605187|gb|EEK62638.1| Two-component response regulator vanR [Bacillus cereus 172560W]
          Length = 242

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+  +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPITFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A R +     +I
Sbjct: 134 FNQNAVQVMEKKINIRGLEIDEASRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWNERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|152999147|ref|YP_001364828.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160873754|ref|YP_001553070.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|151363765|gb|ABS06765.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160859276|gb|ABX47810.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315265979|gb|ADT92832.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 227

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + D           ++             S+   DV  ++  L   G   L+
Sbjct: 4   LLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLP--GRDGLD 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R      P+I ++    L   +   D G DD + KP +  E+ AR+ A+ RR   
Sbjct: 62  ILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHGG 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     E G +++    R    QG+   L  RE  +LE+LM +  + + + Q+   ++G 
Sbjct: 122 TQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLR--NKLGF--DPVDSKRFLGYSI 220
           +D     NVV+  I ++R K+    K G     ++S R  GY +
Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224


>gi|317128046|ref|YP_004094328.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472994|gb|ADU29597.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 228

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D  ++++        +G  +    +++ EE  +   +    A+   L+       E+
Sbjct: 9   VVEDNEMIRNLVEIYLRKEGYDV--ITAVDGEEAKEQFLQYSPCAVILDLMLPKLSGEEV 66

Query: 64  PRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            R IR    +++ +I ++   S ++ ++    G DD V KP    E++ARV A+ RR   
Sbjct: 67  CRWIRSQKRNEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRRSGQ 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +        + G+   L + E  +L Y M N    +++ Q+   I+   
Sbjct: 127 FCQKISLNGLIIQPRKGVVLLNGKPVNLTKYEFNLLFYFMENPNIVLSREQLIQQIHPHT 186

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           D  + +  +++HI KLR+K+ +       + + R +GY  
Sbjct: 187 DVDILDRTIDAHIKKLREKIEDVPSKPKKIQTVRGMGYRF 226


>gi|302535152|ref|ZP_07287494.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444047|gb|EFL15863.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 237

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 99/240 (41%), Gaps = 33/240 (13%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++        DG  +    +G + LE         R D++ ++  +   G 
Sbjct: 7   LFVEDDDVIREATTLALERDGFVVTAMPDGLSGLESFRA----NRPDIALLDVMVP--GM 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 61  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRR 120

Query: 119 LKVS------------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
              +                        G + V ++G +    G    L   E R+L   
Sbjct: 121 FGHAGGPQNGANGSAGADGSDERGVLSFGDLEVDTEGMEVRRAGAPVALTPTEMRLLLEF 180

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  G  +++ ++   ++  +D   +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 181 SSAPGTVLSRDRLLERVWD-YDWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 235


>gi|237740054|ref|ZP_04570535.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294782859|ref|ZP_06748185.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
 gi|229422071|gb|EEO37118.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294481500|gb|EFG29275.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
          Length = 224

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 103/225 (45%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +  S++  FN  E  E+L      D+  ++  L       
Sbjct: 3   ILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYL-DYGTYDLIVLDIMLPKV--NG 59

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
            E+ + +R +     ++ ++   S++  +   D G DD + KP    E+LAR+ A+ RR 
Sbjct: 60  YEVIKKLRENKNETAVLMLTARDSIEDKIKGLDLGADDYLIKPFDFGELLARIRALVRRK 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N  E   + +    +     G+   L  +E  +LEYL+ N+G  +++ +I  +++
Sbjct: 120 YGNTSNTMEIDDLCIDIAKKTVVRGGKNIELTGKEYEVLEYLIQNKGHVLSRDKIRDSVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +    E N+++  I  +RKK+        + +KR LGY +  +
Sbjct: 180 D-YGYEGESNIIDVLIKNIRKKIDIGNSKPLIHTKRGLGYVLKED 223


>gi|227547950|ref|ZP_03977999.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079961|gb|EEI17924.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 235

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +E  NS      +    R D   ++  +   G    E
Sbjct: 11  LVVDDEPNIVELLTVSLRFQGFEVESVNSGSEALKVAREFRPDAYILDVMMP--GMDGFE 68

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR  V
Sbjct: 69  LLSKLRADGLDGPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNV 128

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S++      + +  D  +    GE+  L   E  +L YLM N    ++K +I   
Sbjct: 129 TADADSDSTLRYADLTLNDDTHEVTKSGEIIDLSPTEFNLLRYLMLNAEVVLSKAKILDN 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 189 VW-HYDFGGDGNVVESYISYLRRKV-DTGDVPLIHTVRGVGYVL 230


>gi|163791203|ref|ZP_02185620.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873534|gb|EDP67621.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G  +E  +N  E    +++    D+  ++  +       
Sbjct: 3   ILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPN--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R   Q+P++ +S   +    +    +G DD V KP +  E++AR+ ++ RR  
Sbjct: 61  IQVVKEVRKELQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRSN 120

Query: 121 VSN-----NRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +      N+ E GP+ +  +  +   + GE   L   E  IL  L +N  +  +  +IF
Sbjct: 121 YATNLQELNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASNPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++   +  V    V  H+S LR K+     G   + +   +GY I
Sbjct: 181 ERVWQQ-ESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226


>gi|153940791|ref|YP_001390392.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936687|gb|ABS42185.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318479|gb|ADF98856.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 228

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +  + + +  E ++     D+  I   L+       
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKV--YCTTKGLESIEIFKSIDIQLIILDLMLPDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL  
Sbjct: 62  EVCRIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N+ +    + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I
Sbjct: 122 YNSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 226

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 8/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +  +     +        +    + L+   ++ V  +   ++ +G     
Sbjct: 7   LVVDDEPELLELVVTYLRKESYR--ALTADNGADALKRIEQDAVDLVILDVMMEGMDGFH 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   IR    +P+I ++   +    +    +G DD + KP   +E++ARV A  RR    
Sbjct: 65  VCERIRQKHSLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALRRANMD 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K+   R   G + +  DGR   V G +  L RRE  +L +L  N G+  ++  +F  ++ 
Sbjct: 125 KIRGRRLVFGELELDQDGRAVTVAGSLISLTRREYELLLFLAENAGRAFSREHLFERVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               A     V++HI  LR KL        +++   +GY  
Sbjct: 184 TDTAASSLRTVDTHIKTLRLKL--NGAGRFIETVWGVGYKF 222


>gi|301053448|ref|YP_003791659.1| response regulator [Bacillus anthracis CI]
 gi|300375617|gb|ADK04521.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 232

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKV--FSAHNGEEALEIVNYNSIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231


>gi|255324956|ref|ZP_05366064.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255298016|gb|EET77325.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 279

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 55  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAMDEARRFSPDVVVLDLGLPE--LDGLE 112

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 113 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 172

Query: 123 ------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +     +  V      L R E  +L  L    G+ + +  + + 
Sbjct: 173 ITPPQVTTPLIVGDLILDPVAHEVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 232

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 233 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 276


>gi|311739315|ref|ZP_07713151.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305613|gb|EFQ81680.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 268

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPE--LDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V      L   E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTHTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 265


>gi|268592860|ref|ZP_06127081.1| QseB [Providencia rettgeri DSM 1131]
 gi|291311649|gb|EFE52102.1| QseB [Providencia rettgeri DSM 1131]
          Length = 220

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G +++ F   +  +     A  D   ++  L       +
Sbjct: 3   ILLIEDDRLIGDGLKVGLTQLGFTIDWFMDGKQGQLALFDAPYDAVVLDLSLPN--IDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +  R      P++ ++   +L   +     G DD + KP    E++AR+ A+ RR  
Sbjct: 61  DILKHWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALMEVMARLQALIRRRS 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +++   G + +         QGE   L  +E  +L   M N  K  ++  I   +Y 
Sbjct: 121 GQLSSKLTHGDVEMDPVAMTVTQQGEPVQLKGKEFALLSLFMHNPNKVFSRPLIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LR+KL NK     + +   +GY +
Sbjct: 181 -WDEEVSSNSVEVHIHHLRRKLGNKF----IRTIHGVGYRL 216


>gi|148263635|ref|YP_001230341.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146397135|gb|ABQ25768.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 100/228 (43%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-K 56
            ++I+D   + +        +G     +L+G + LE       S   D+  ++  L G  
Sbjct: 4   ILVIEDERDLAELIAFNLEKEGYRPLIALDGVSGLEAA----RSNPPDLILLDLMLPGLM 59

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G ++ +L +     + +P+I ++        +  F+ G DD + KP   RE+L RV A+ 
Sbjct: 60  GTEICKLLKKNEKTAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVL 119

Query: 117 RRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR    K        G + + ++     V GE   L   E ++L  L    G+  ++  +
Sbjct: 120 RRTMPEKAQGKCITIGLVTIDTERHMVSVAGEEIVLTTTEFKLLLNLAERLGRVQSRDLL 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G ++   +   V++H+++LR KL      + + + R  GY ++
Sbjct: 180 LQNVWG-YNYVGDTRTVDTHVTRLRTKLGEAG--EMIKTVRGFGYKME 224


>gi|251792230|ref|YP_003006952.1| transcriptional regulatory protein QseB [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533619|gb|ACS96865.1| transcriptional regulatory protein QseB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 223

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ +G        G +++ F   +       SA  D   ++  L       L
Sbjct: 3   ILLIEDDPLIGNGIQIGLTKSGFAVDWFTDGKIGLEAAQSAPYDAVVLDLTLP--KMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           ++ +  R     VP++ ++   ++   +     G DD + KP    E++AR+ A+  RR 
Sbjct: 61  DVLQAWRQKGIDVPVLILTARDTVDERITGLQRGADDYLCKPFALAEVVARLHALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   +   +R   + R   +  +   L  RE ++LE  M N+ + +++  I   +Y 
Sbjct: 121 GHANPVIQHSLVRFEPNQRKVFLCDQEISLTTREYKLLELFMLNKERVLSRNFIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D  V  N +E HI  LR+KL    G   + +   +GY++  N
Sbjct: 180 TWDNEVSSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219


>gi|325521242|gb|EGD00125.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. TJI49]
          Length = 219

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 91/220 (41%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLP--GQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ +I RR + 
Sbjct: 61  TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+S I +LR K+ +      + + R +GY +
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVL 219


>gi|299532922|ref|ZP_07046309.1| two component heavy metal response [Comamonas testosteroni S44]
 gi|298719146|gb|EFI60116.1| two component heavy metal response [Comamonas testosteroni S44]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +      G++G  ++  ++      L +    D+  ++  L   G   L
Sbjct: 3   LLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLP--GIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +   +R   Q P++ ++    ++  +    +G DD + KP    E++AR+ A+ RR   
Sbjct: 61  AVLAALRQSRQTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGLQ 120

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +          G+   L  +E  +L  L+  +G+ +++T++ S 
Sbjct: 121 AQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +   E NVVE  + +LR KL        + + R +GY ++
Sbjct: 181 VWDM-NFDSETNVVEVAVRRLRLKLDAPFELPLLHTVRGMGYVLE 224


>gi|293603700|ref|ZP_06686119.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817874|gb|EFF76936.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 234

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      L      D+  ++  L        
Sbjct: 7   LLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDV--DGW 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A  QVP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 65  RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 124

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  +R +   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 125 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY++D
Sbjct: 185 DM-NFDSDSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGYTLD 226


>gi|269137806|ref|YP_003294506.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Edwardsiella tarda EIB202]
 gi|267983466|gb|ACY83295.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Edwardsiella tarda EIB202]
 gi|304557861|gb|ADM40525.1| Two-component system response regulator QseB [Edwardsiella tarda
           FL6-60]
 gi|308084102|gb|ADO13167.1| QseB [Edwardsiella tarda]
 gi|308084104|gb|ADO13168.1| QseB [Edwardsiella tarda]
          Length = 219

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G +L+ F   +       SA  D   ++  L   G   LE
Sbjct: 4   LLIEDDRLIGDGIKAGLSKMGFTLDWFTDGQLGMTALESAPYDAVILDLSLP--GIDGLE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R  R      P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  ILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +        + G   PL  +E  +LE L+ N G+ + ++ I   +Y  
Sbjct: 122 QAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D+ V  N VE HI  LR+KL +      + +   +GY++
Sbjct: 181 WDDDVSSNAVEVHIHHLRRKLGSHF----IRTVHGVGYTL 216


>gi|119486576|ref|ZP_01620626.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119456193|gb|EAW37325.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 253

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 99/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + ++          G  +           L  +   D+  ++  +        
Sbjct: 16  ILIADDESAIRRILTTRLSMVGYEVVAAADGREALSLFETENPDLVVLDVMMP--KLNGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S+VP+I ++    +   +   + G DD + KP   +E+ AR+ AI RRL+ 
Sbjct: 74  GVCQKIRTQSEVPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIQAILRRLRE 133

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +N          +   +R+ +  R      ++ PL   E  +LE L+ + G+ V++++I 
Sbjct: 134 TNANRDVSAETIQVDALRIDTIKRRVYKGEQLIPLTYIEFNLLELLLKHSGEAVSRSEIL 193

Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             ++G     + +  VV+ H+++LR K+       + + + R +GY
Sbjct: 194 QELWGYAPRRIADMRVVDVHVARLRAKIEEDQRNPEYILTVRGIGY 239


>gi|156741487|ref|YP_001431616.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232815|gb|ABU57598.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 231

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A     G      +       L  S R D+  ++  L        
Sbjct: 5   ILVVDDDRQITRLVSAYLEHAGFQTLTAHDGATALRLARSERPDLMVLDLMLPD--IDGA 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R IRA   +   P+I ++        +   + G DD + KP + RE++ARV A+ RR
Sbjct: 63  DLTRAIRADPHIAAMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLRR 122

Query: 119 LKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +     E G +R+  D  +  V G+   L   E  +L   ++  G    + ++ 
Sbjct: 123 TSGGTPQPAVLLEAGRVRLDPDRHEVTVAGQPLNLTPTEFHLLRIFLSLPGHAFTRRELI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               G ++    E  ++SHI  LR+KL +      +++   +GY +
Sbjct: 183 EEGVG-YEYEGMERTIDSHIKNLRRKLESVDAGIRIETVYGVGYRL 227


>gi|186686259|ref|YP_001869455.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468711|gb|ACC84512.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 236

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 97/236 (41%), Gaps = 23/236 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   +          +G     S +G N+L   +        D+  ++  +   G
Sbjct: 3   ILIVEDEPEIAHLIQLSLEKEGFFCRISRDGINALRMFQ----EQPPDLIILDLMIP--G 56

Query: 58  EKVLELPRIIRAHSQV--P-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              LE+   IR       P ++ ++        +    +G DD + KP   RE++ARV A
Sbjct: 57  LDGLEVCARIRQKPGTKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELIARVRA 116

Query: 115 IYRRL---KVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGK 166
           + RR       N    T    V  D R         Q EV  L   E  +L   ++N G+
Sbjct: 117 LLRRSLRQGGQNQVNRTQHFIVDVDQRTASRQMNSQQPEVLDLTTLEFNLLTTFVSNPGR 176

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              +TQ+   ++G  +   +E VV++H+++LRKK+  +      + +   +GY  +
Sbjct: 177 VWNRTQLIDKLWG-DNFFGDERVVDTHVARLRKKIEPDSASPTFIKTVVGVGYKFE 231


>gi|332527397|ref|ZP_08403453.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332111806|gb|EGJ11786.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 219

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G  ++     E       SA    + ++  L  K    L
Sbjct: 3   ILLVEDDPLLGDGLRAGLTQAGFQVDWVRDGEAASRELRSAVHAAAVLDLGLPRK--DGL 60

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+     RA  ++P++ ++   ++   +   DSG DD V KP+   E+ AR+ A+ RR  
Sbjct: 61  EVLAETRRAGVRLPVLVLTARDAVSDRVIGLDSGADDYVVKPVDLDELAARLRALIRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + +    R     GE   L +RE  +L  LM N G+ + + Q+   +Y 
Sbjct: 121 GQTQDLLAAGEVVLDPAARTVTRGGEPVVLSQREFDLLHALMLNAGRVLTREQLEQHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   VE N VE H+  LR+KL    G + V + R +GY +
Sbjct: 180 RWGREVESNAVEVHVHHLRRKL----GAELVQTVRGVGYLL 216


>gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300072146|gb|ADJ61545.1| response regulator for cobalt/zinc/cadmium resistance transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 89/220 (40%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D       + G  ++   +         +    +  ++  L   G    
Sbjct: 3   ILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLP--GMNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++    ++  +   + G DD + KP  + E+LARV  + RR   
Sbjct: 61  DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGPS 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  E   + +    R     G+   L  +E  +L  L+   G+ +++ QI S ++ +
Sbjct: 121 REVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+  + +LR KL        + +   +GY  
Sbjct: 181 -NFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVF 219


>gi|153940586|ref|YP_001390235.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936482|gb|ABS41980.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318329|gb|ADF98706.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 225

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D  ++  G       +G + +  ++    ++ L+ + + D+   +  L       
Sbjct: 3   ILLVEDDKIIASGIEYSLEQEGFTTILCYDVATAKKALKYN-KFDLCIFDLSLPD--GNG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL +I+R    +P+I ++        +   D G DD + KP   RE+++R+ ++ RR +
Sbjct: 60  YELCKIVREKEDIPIIFLTACDDEVNVVMGLDMGADDYIIKPFRIRELISRIKSVLRRYQ 119

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N     E   IR+ +         +   L   E R+L  L  N+G+ +++ Q+   I
Sbjct: 120 KGINSKIILELNDIRINTLDAKVYKNDKEIVLTALEYRLLLILANNQGQVLSRNQLLQGI 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +  + V +N +  +I ++R+KL N       + + R +GY +
Sbjct: 180 WDVAGDFVNDNTLTVYIKRIREKLENDPQKPVIIKTVRGMGYKV 223


>gi|313900973|ref|ZP_07834463.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312954393|gb|EFR36071.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 239

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L  ++G  +E   + + E  +  +   D+  ++  +        
Sbjct: 15  ILIVDDNQEIREVVTVLLENEGYEVE--EAGDGEAAVAKAEDMDLIILDVMMP--KMDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +  R IR  +  P++ ++     Q     F SG DD + KP  + E++ARV A+ RR   
Sbjct: 71  KACRQIREVTNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRRYCI 130

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     ++     + +  +    + + E   L   E +IL  L  +  K  +  ++
Sbjct: 131 YKGKEEPQEGDQIIMHDLIISRNSNQVKKKEEAVNLTEMEYQILLLLADHPKKIFSNQEL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + AI+         N +  HI  LRKKL  +      + +    GY  D
Sbjct: 191 YEAIWKGPYMYSANNTIMVHIRNLRKKLGVDPQNPVYIKTVWGKGYRFD 239


>gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073503|gb|ADJ62902.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++++D   + +         G +      +       + +   V  ++  L    G  +
Sbjct: 8   ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLVL 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L   R  +  + +P+I ++     +  +   + G DD V KP   +E++ARV A+ RR  
Sbjct: 68  LNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++ +   +   I +  + R   V  +   L + E ++L YL+A+  +  ++ Q+   ++
Sbjct: 128 PEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G     +EE  V+ HI +LRK L +      V + R +GY +
Sbjct: 188 GDH-TFIEERTVDVHIMRLRKSLGDLAH--YVQTVRGMGYKL 226


>gi|296111122|ref|YP_003621503.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832653|gb|ADG40534.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 101/230 (43%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   E   +++ +E L       D++ +   ++      
Sbjct: 3   ILVVDDDIEIAELLEIYLKNEGY--EPIMAVDGKEALSKLNTNPDIALMILDVMMPNMNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ +++R  S++P++ +S        +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  LEVVKVVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAE 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            S      +  + G + +  D  +     G++  L   E  IL  L ++  +  +   IF
Sbjct: 121 NSVQDKTPDVLDIGSLFINKDSHEVKTADGDLVNLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++   +  V    V  H+S LR K+     G   + +   +GY I+ +
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGYKIEVS 229


>gi|262039513|ref|ZP_06012815.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
 gi|261746494|gb|EEY34031.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
          Length = 225

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +    D+   ++   + +           D   ++  L        
Sbjct: 3   ILVVEDEKSLNEVIVKRLEDEHYGVDWCYNGKDALDNILITEYDAIILDIMLPE--LNGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +R+ +   P++ ++   S++  +   DSG +D + KP    E+LAR+  + R+  
Sbjct: 61  EVLKTMRSKNIDTPVLFLTAKDSIEDRVKGLDSGANDYLTKPFAFEELLARIRVMLRKDS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S N      + V ++            L +RE  ILEY++ NRGK ++K +I   I+ 
Sbjct: 121 NSSGNVFTVANLTVDTNSHSVFRDDIPIKLSKREFTILEYMIRNRGKILSKDKIEQHIWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV+E +I  LRKK+        + +   +GY +
Sbjct: 181 -YDYEGGSNVIEVYIRYLRKKIDADFSPKLIHNIYGVGYIL 220


>gi|160945120|ref|ZP_02092346.1| hypothetical protein FAEPRAM212_02639 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442851|gb|EDP19856.1| hypothetical protein FAEPRAM212_02639 [Faecalibacterium prausnitzii
           M21/2]
          Length = 228

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D A +++        +G  ++GF S E       +A  ++  ++  L   GE  
Sbjct: 1   MIYIVEDDASIRELEQYALQSNGYEVQGFESAEPFWQAMRTAEPELVILDVMLP--GEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             + + +R      ++P+I ++   S   T+   D G DD + KP    E L+RV    R
Sbjct: 59  FSILKKLRNTPSLRRLPIIMVTAKSSELDTVRGLDCGADDYIAKPFGIMEFLSRVRVALR 118

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   +V  +      I++ +      V      L  +E  +L  L+ N    V +  I  
Sbjct: 119 RSAPEVRPDVLAFHEIQLDNARHSVTVNSTPVELTYKEYCLLRLLLENTSLVVTRETILQ 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D +VE   V+ HI  LRKKL +      + + R +GY +
Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAG--RYICTVRKVGYKL 220


>gi|119963093|ref|YP_948412.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
 gi|119949952|gb|ABM08863.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
          Length = 253

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG              +  S++ D+  ++  L   G   +
Sbjct: 34  ILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLP--GSDGI 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R IR  S VP++ ++        +   +SG DD V KP    E++ARV A  R   +
Sbjct: 92  EVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 151

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        + +   G      GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 152 KAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG- 210

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
           +  A +  +V  H+ +LR K+ R+    + V + R +GY 
Sbjct: 211 YRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250


>gi|332702286|ref|ZP_08422374.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552435|gb|EGJ49479.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 225

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +    + G  +E     +   ++ ++   D   ++  L   G   L
Sbjct: 3   ILVIEDDLEAASYMLKGLRESGHVVEHAADGKDGLYMAAAGSYDAMVVDRMLP--GVDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R+     P++ +S    +   +    +G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TIVKTLRSTGNATPVLFLSAMGEVDDRVRGLKAGGDDYLTKPYAFAELLARLEALDRRAG 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + +   GR     G    L  +E  +LEYLM + G+ V +T +   ++
Sbjct: 121 AVTGGTMLKVADLEMDLVGRSVRRAGRSIELQPKEFALLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR+K+        + + R  GYS+
Sbjct: 181 D-YSFDPQTNVIDVHISRLRQKIDKDFDRPLLHTVRGSGYSL 221


>gi|325956445|ref|YP_004291857.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|325333010|gb|ADZ06918.1| Response regulator [Lactobacillus acidophilus 30SC]
          Length = 238

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 110/237 (46%), Gaps = 23/237 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   V +     F  +G    ++++G  +++   + +++ + D+  ++  L  K 
Sbjct: 3   ILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDM--FKENADKYDLITLDLNLPKK- 59

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++
Sbjct: 60  -DGIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALH 118

Query: 117 RRL-----------KVSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANR 164
           RR+           K  +   ET  +++    R+     +    L  +E  +L  +    
Sbjct: 119 RRVMMEEKPALPQEKKQDYDIETEHLKISKSRREVLFDAQPVTDLTPKEFDLLYTMAQKP 178

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 179 KQVFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 233


>gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 243

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 98/233 (42%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  ++  +         S    D+  ++  L   G   L
Sbjct: 5   LLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFEKASRESYDLILLDLMLP--GMNGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++   +R      P+I ++        +    SG DD + KP    E+LARV A+ RR  
Sbjct: 63  DILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTS 122

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +  +++ + G + ++ +  +  + G+   L  +E  +L YL    G  + +
Sbjct: 123 GGDEGVLSDQKDSSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             + +A++G FD    +  V+ H+S LRKKL        +DS R +GY +  N
Sbjct: 183 DDLMNAVWG-FDYIGGQRTVDVHVSSLRKKLELDPDSVHIDSIRGVGYKLVVN 234


>gi|227506135|ref|ZP_03936184.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197242|gb|EEI77290.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 268

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 85/225 (37%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPE--LDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 ------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLSVGDLILDPIAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRM 265


>gi|261405111|ref|YP_003241352.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261281574|gb|ACX63545.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 230

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G +L    +    E L+      V  I   ++      +
Sbjct: 6   ILMVDDETEILKLMEIYVRNEGYTL--LTASHGLEALEILKNHKVDLIILDVMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  +  P+I +S        +     G DD V KP    E++AR+ +  RR K 
Sbjct: 64  QACMKIREENNTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYKQ 123

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            NN+        +   + +        V G    L  RE  +L  L  NRG  ++  +I+
Sbjct: 124 LNNQSVRDENEIQIDELILNVASHRVTVAGREIKLTPREFSLLHTLAINRGLVLSMDKIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + ++        +N V  HI KLR+K+  +    + + +   +GY I+
Sbjct: 184 TEVWNEP-FMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230


>gi|171059157|ref|YP_001791506.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170776602|gb|ACB34741.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 241

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G +    +              D+  ++  L   G   L 
Sbjct: 10  LVVEDEPRLARLVSDYLVAAGYTTRIVDHGLDVLPAVRQHAPDLIVLDLMLP--GRDGLS 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + +R  S+VP+I ++        L   ++G DD + KP   RE++ARV A+ RR K  
Sbjct: 68  LCQELRRFSEVPVIMLTARVEEVDRLIGLEAGADDYICKPFSPREVVARVKAVLRRHKRV 127

Query: 123 NN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                 A + P+ +  +     + G    L   E R+L+ L A  G+  ++ Q+   ++ 
Sbjct: 128 PTDLVAAPSSPLVIDEERHRALLDGHELDLTPVEFRLLKALAAAPGRVFSRDQLLDKLHD 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
               A+ +  ++SH+  LR+KL     G +P+ S   +GY  +
Sbjct: 188 DT-RALSDRTIDSHVKNLRRKLEQACPGLEPIRSIYGVGYRFE 229


>gi|168185446|ref|ZP_02620081.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169296251|gb|EDS78384.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 232

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+ +  F + +  + L     +++  I   ++      ++
Sbjct: 7   LVVDDDKEIREAIKIYLKNEGIKV--FEAKDGIDALMLLQEQEIHLILMDIMMPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIREKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVRF 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K +    + G I +  + +   V GE   L   E +ILE LM N+G+  +  QI+  
Sbjct: 125 ASYKRNTEELQVGGIILNKNTKLVSVDGEEVRLTPIEYKILELLMENKGQVFSIEQIYEN 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 VWNEPCYNAE-NTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKI 228


>gi|160939834|ref|ZP_02087181.1| hypothetical protein CLOBOL_04725 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437268|gb|EDP15033.1| hypothetical protein CLOBOL_04725 [Clostridium bolteae ATCC
           BAA-613]
          Length = 225

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   + +         G + EGF + E         + D+   +  L   G    
Sbjct: 4   IYIIEDDENIMNLLKIALEGFGYAAEGFETAEEGLARMREEKPDLVIFDWMLP--GMDGT 61

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E  + +R   Q   VP++ ++        +   D G DD + KP    E+ AR+ ++ RR
Sbjct: 62  EAIKEVRNTEQLKYVPIMLLTAKEKELDKVVGLDCGADDYMVKPFGVLELSARIRSLLRR 121

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K   +R       I+V    R+    G +  L  +E  +L YL+ N+ + V + ++ + 
Sbjct: 122 TKREEDRDVLFYQDIQVNRKTREVSSGGRLVELTLKEFELLVYLLENQSRVVTRDELLNR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G ++   E   ++ HI  LR+KL  + G   + + R +GY +
Sbjct: 182 IWG-YEYDGETRTLDMHIRTLRQKLGEEGGA-CIKTVRGVGYRM 223


>gi|229150108|ref|ZP_04278331.1| Two-component response regulator vanR [Bacillus cereus m1550]
 gi|228633407|gb|EEK90013.1| Two-component response regulator vanR [Bacillus cereus m1550]
          Length = 243

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 75  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A R       +I
Sbjct: 135 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNCVFTIEEI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 195 YESVWNERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 242


>gi|58039171|ref|YP_191135.1| phosphate regulon response regulator PhoB [Gluconobacter oxydans
           621H]
 gi|58001585|gb|AAW60479.1| Phosphate regulon response regulator PhoB [Gluconobacter oxydans
           621H]
          Length = 240

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D   +           G  +E     E    +  +AR D   ++  L   G   
Sbjct: 12  LVLLVEDDPALLLMTCYNLEQRGYRVETAEDGEAALLVLETARPDAVVLDWMLP--GLSG 69

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L++ R IRA+     VP++ ++   + Q  +   D+G DD + KP     + AR+ A+ R
Sbjct: 70  LDVCRRIRANPALRDVPVLLLTARSAEQDAIRGLDTGADDYLMKPCSIDTLDARLRALLR 129

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R + S +R     I +  +    E  G +  L   E R+L+ L+ N  K  ++  +   I
Sbjct: 130 RHQSSYDRLSFADITLDPETHRVERAGRMLSLGPTEYRLLDLLIRNPRKVFSRENLLRRI 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  +  VE   ++ HI +LRK +      D V + R  GY++D
Sbjct: 190 WGQ-NIHVEIRTIDVHIRRLRKAINGPGEVDLVRTVRAAGYALD 232


>gi|75763869|ref|ZP_00743514.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488640|gb|EAO52211.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 236

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 100/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 16  LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GIDGLQ 73

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +   P++ ++    +   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 74  VLQRLRADNNTTPVLLLTAKDXIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 133

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 134 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 192

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + +    GY +
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETKLIHTVGGTGYVL 232


>gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus italicus DSM 15952]
 gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus italicus DSM 15952]
          Length = 235

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +      +    +      D   ++  L       +
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQSFDFILLDVMLPH--MDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     +P+I ++        +   + G DD ++KP   RE++AR+ AI RR+ 
Sbjct: 62  EITKRLRQEKVNIPIIILTAKDDPIDRILGLEIGADDYLSKPFSPREVIARIKAIARRMS 121

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +             + G I         +V+GE   L  +E  +L Y M  + + + + 
Sbjct: 122 QNEVQPIDEEKEELVKIGSIEADLSNYQVKVKGEQIFLTPKEFELLVYFMKRKDRVIDRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +   I+  FD   +  +V+ HIS LR+K+ +       + + R  GY+ 
Sbjct: 182 TLLDRIW-HFDFDGQSRIVDVHISHLREKIEDDPKHPQYLQTVRGFGYTF 230


>gi|229093928|ref|ZP_04225019.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228689410|gb|EEL43224.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 231

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G   E   +      +    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPE--IDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A+ RR 
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   N  + G + V    R+     +   L  +E  +L+ L+ N+G  + +  +   I
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|255523846|ref|ZP_05390810.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512408|gb|EET88684.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 227

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++    +    E L      D   +   ++      +
Sbjct: 5   ILVVDDDKNIRNLIKVYLENEGYNI--LEASNGAEALVMINENDFDLVILDVMMPILDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
                IR +  +P+I +S        +     G DD V+KP    E++ARV A  RR K 
Sbjct: 63  SACIKIRENYTMPIIFLSAKDEEIDKIQGLTVGADDYVSKPFGSMELIARVKAQLRRYKK 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +++      + +  D  +  V+G+   L  +E  ILE L  NRG   +  +++ 
Sbjct: 123 FNVEPQNSSIVTIEDLTINFDTHEVTVRGDKVKLTPKEFDILECLARNRGMVFSVQKLYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+   +  V +  +  HI+ LR+K+  +      V +   +GY I
Sbjct: 183 IIW-KEEFVVSDTSIVVHITNLRQKIEIDPKRPKYVKTVWGVGYKI 227


>gi|229014033|ref|ZP_04171157.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228747289|gb|EEL97168.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 242

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +    +++ EE L+   + DV  I   ++      +
Sbjct: 15  ILIVDDEKEIRKLIAIYLKNEGYEV--LQAVDGEEGLEIVKKRDVHLIVLDIMMPKIDGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 73  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +  E G I++    R   +  E   L  RE  +LE L  N+G  +   QI+
Sbjct: 133 MSGTSVKDESVFEVGDIKINIVTRQVIIANEEVKLTPREFEVLELLARNQGMVLNAAQIY 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 193 ERVW-KEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 241


>gi|159897434|ref|YP_001543681.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890473|gb|ABX03553.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 238

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +    + G  +           L    + D+  ++  L       L
Sbjct: 8   ILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQ--LDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR     P++ ++        +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 66  EVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQR 125

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    + +      G + +        ++ +   L   E  IL+ L+ N G+  ++
Sbjct: 126 IQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSR 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   I+G       +  V++ + +LRKKL +    D +++   LGY +
Sbjct: 186 NYLLDTIWGQS-YVGGDRSVDNAMLRLRKKLADFG--DAIETVWGLGYRL 232


>gi|46579496|ref|YP_010304.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602954|ref|YP_967354.1| two component transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|46448910|gb|AAS95563.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563183|gb|ABM28927.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris DP4]
 gi|311233311|gb|ADP86165.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris RCH1]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 97/229 (42%), Gaps = 17/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++++D   +           G  +    +    + L+S+ R    +  ++  L   G  
Sbjct: 6   ILVVEDDEDILQLLRFTLEAAGFEV--VTAATGRDGLESAQRHVPGLVLLDLMLP--GMS 61

Query: 60  VLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
             ++ R ++       VP+I ++        +   + G DD V KP   RE++ R+ A+ 
Sbjct: 62  GFDVCRELKRTPATEHVPVIMLTARGEEVDRIVGLELGADDYVIKPFSPRELVLRIRAVL 121

Query: 117 RRLKVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +R+  +   A         + +  +    EV GE   L   E R+L  L+ NRG+   + 
Sbjct: 122 KRVTGAQEPAPRGQWNVDGLFLDEEAHRVEVDGEEALLTATEFRLLAELVRNRGRVRTRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + ++G ++       V++H+ +LR+K+        +++ R +GY  
Sbjct: 182 QLLNTVWG-YEFEGYARTVDTHVRRLRQKIGRFAA--MIETIRGVGYRF 227


>gi|322806233|emb|CBZ03801.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 221

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLP--KIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV A+ RR   
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSISLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +  V+++HI  LR+KL      D + + R +GY I+
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIE 220


>gi|294814012|ref|ZP_06772655.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326611|gb|EFG08254.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 340

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G + E             S R D+  ++  +       L
Sbjct: 107 ILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPR--MDGL 164

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 165 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 224

Query: 121 VSN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            ++                   +R+    R+         L R E  +LE L+A+  + +
Sbjct: 225 YASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVL 284

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + QI  +++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 285 TREQILKSVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRIVHTVRGVGYVL 335


>gi|260600073|ref|YP_003212811.1| DNA-binding transcriptional activator CusR [Cronobacter turicensis
           z3032]
 gi|260219420|emb|CBA34772.1| Probable transcriptional regulatory protein silR [Cronobacter
           turicensis z3032]
          Length = 234

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 102/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 11  ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDV--NGW 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 69  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 129 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 189 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEV 231


>gi|291541536|emb|CBL14646.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 223

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
           +  +++D   +++         G  ++ F   +      ++    +  ++  L    G  
Sbjct: 2   LIYIVEDDTDIRELESYAMKSSGYEVQSFGESKSFFKACTAEIPQLVILDVMLPDFDGLS 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           VLE  R       VP+I ++   S    +   D G DD + KP    E+++RV AI RR 
Sbjct: 62  VLEKMRRDAVTKNVPVILVTAKGSEMDKVKGLDMGADDYITKPFSVLELISRVRAILRRC 121

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            V    +  + G I            GE   L  +E  +L+YL+ N+G  + +  I   +
Sbjct: 122 SVDDRQDVIKLGQIVFDDSKHIVTSCGEECNLTFKEYELLKYLLKNKGMALTRENIILNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G +D   E   V+ HI+ LR+KL +    + + + R +GY 
Sbjct: 182 WG-YDFEGESRTVDMHITTLRQKLGSCG--NLIKTVRNVGYK 220


>gi|260185480|ref|ZP_05762954.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289446155|ref|ZP_06435899.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289419113|gb|EFD16314.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
          Length = 253

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++             S   D   ++  L   G    
Sbjct: 25  ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDSGDYDAVVLDVMLP--GIDGF 82

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+  R+ R     P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G +R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              EA   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 203 AAYEAR-SNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242


>gi|50954325|ref|YP_061613.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950807|gb|AAT88508.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 227

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 86/221 (38%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G              +   ++ D+  ++  L   G   +
Sbjct: 5   ILVVDDDTALAEMIGIVLRTEGFDPVFCEDGSEAVGIFRESKPDLVLLDLMLP--GLDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IRA S  P+I ++        +   +SG DD + KP + +E++AR+    R   V
Sbjct: 63  EVCSSIRAESGTPIIMLTAKSDTADVVKGLESGADDYMVKPFNPKELVARIRTRLRPAPV 122

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    +   G + V   G +         L   E  +L  L A   +   +  +   ++G
Sbjct: 123 APPAEQLCIGDLLVDVAGHEVRRGEARIALTPLEFDLLLALAAKPQQVFTREMLLEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
            +    +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 -YHYKADTRLVNVHVQRLRAKVERDPDNPKIVMTVRGVGYR 222


>gi|49481373|ref|YP_038858.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332929|gb|AAT63575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL Y M N G  + + Q+ 
Sbjct: 123 TKQLLENEDDILSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYFMKNPGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|332993185|gb|AEF03240.1| two component transcriptional regulator [Alteromonas sp. SN2]
          Length = 237

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 96/234 (41%), Gaps = 19/234 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + GV +E     +       S    +  ++  L       L
Sbjct: 5   ILIVEDDQDIANLMRVNLLELGVEIEHQTDGKVALECALSDEFAIVILDVMLPS--MSGL 62

Query: 62  ELPRIIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R +R    +P   +I ++   S    +   + G DD + KP   RE+ ARV +  R+
Sbjct: 63  DICRKVRD--ALPMQSIIMLTSKTSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRK 120

Query: 119 LKVS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             V           +   + G + +        +  E   L   E  +L +L ++ G+  
Sbjct: 121 YHVVQQTQTTQQQIDTPLKLGRLVIDQRNHQVFLSEEELVLTATEFELLHHLASHPGQVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +++Q+  +++G +  +  E+ V SHI++LR KL  +      V +   +GY  +
Sbjct: 181 SRSQLLESVWG-YHHSGYEHTVNSHINRLRSKLENDATAPQIVQTVWGVGYKFN 233


>gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium]
          Length = 232

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + D        +G  +   +  +    +  +   D+  ++  +        
Sbjct: 6   ILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQSIDLIILDIMMP--KMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQVRAQYNMPIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNAQLRRSMK 123

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N        +  E G I +  D R   + GE   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNHPQADDKKSILEFGEIVISPDQRTVFLYGENIGLTPKEFDILYLLASHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI  LRKKL  +K     + +   +GY+ +
Sbjct: 184 FQQVWNDA-YFGGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231


>gi|160933446|ref|ZP_02080834.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
 gi|156867323|gb|EDO60695.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
          Length = 234

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++    A   D+G ++    + +  E ++         I   L+       
Sbjct: 15  ILIIEDEEAIQGVVKAFLEDEGYNV--VLASDGLEGMEKFREYHPDLILLDLMLPKMNGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   IR  SQVP+I ++      + +  FD+  DD + KP     ++  + A+ RR + 
Sbjct: 73  SVCEAIRKESQVPIIMLTALDDDASQMKGFDALADDYITKPFSMPLVVKHIEAVLRRAEQ 132

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              V  N      + + +D     V+ E   L  RE  IL+ L+ N+G+   +  +  +I
Sbjct: 133 GAGVETNILRYKDLTLDTDSFTVLVKDESVSLTIREFEILKLLVENQGRVFTRESLLDSI 192

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   +E +V +HI  +RKKL    G D +++ R  GY I+
Sbjct: 193 WG-YDYFGDEKIVNTHIKNIRKKL----GVDYIETIRGAGYKIE 231


>gi|149910246|ref|ZP_01898891.1| Heavy metal response regulator [Moritella sp. PE36]
 gi|149806715|gb|EDM66680.1| Heavy metal response regulator [Moritella sp. PE36]
          Length = 224

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G +++  ++        +    D+  ++  L   G    
Sbjct: 3   ILIIEDEVKLGKYLKQGLDESGFNVDLVDNGIDGLHQTTEMDYDLVLLDVMLP--GMNGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119
           ++ + +R   + +P+I ++    +   +   + G DD ++KP    E+LAR+    R + 
Sbjct: 61  DILKRLRLKPKYLPVIMLTARDDVADRVQGLELGADDYMSKPFSFCELLARIHNQLRDKG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G +      R  +  G+   L  +E  +LE+L+  +G+ ++K+QI S ++ 
Sbjct: 121 STHSAILTIGDLEFNRLKRKVKRDGDSIDLTAKEFALLEFLLTRQGQVLSKSQIASHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + N++E  I +LR K+        + + R +GY ++
Sbjct: 181 I-NFDSDTNIIEVAIKRLRNKIDQGFSSPLIHTVRGMGYVLE 221


>gi|148544452|ref|YP_001271822.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184153816|ref|YP_001842157.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227363120|ref|ZP_03847255.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325682774|ref|ZP_08162290.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|148531486|gb|ABQ83485.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183225160|dbj|BAG25677.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227071838|gb|EEI10126.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977124|gb|EGC14075.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 228

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +    L+    L+++  +D   I   L+      +
Sbjct: 4   ILIIEDEENLANFVELELKHEGYDTDV--ELDGRAGLEAALNQDFDVILLDLMLPELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR+  
Sbjct: 62  EVARRVREIKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K          + +  + R      EV  L +RE  +L  LM N    +++  + 
Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|206974997|ref|ZP_03235912.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959391|ref|YP_002337939.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095531|ref|YP_002529591.1| response regulator [Bacillus cereus Q1]
 gi|206747016|gb|EDZ58408.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065539|gb|ACJ79789.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239589|gb|ACM12299.1| response regulator [Bacillus cereus Q1]
          Length = 232

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDQDIVRFMNVNLIQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E++ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 248

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +  +++   EE L+S  R+    I   ++       
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQV--YSATNGEEALESFHRDSPDLIVLDVMLPKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 64  AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 122 SNNRAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           + +  ET            G + V ++ R     G+   L   E  +LE L    GK V 
Sbjct: 124 TVSVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVP 183

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|25300968|pir||AC0630 response regulator copR [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502270|emb|CAD08222.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137883|gb|AAO69444.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 248

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 83  QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 VFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + + +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVQGMGYRL 240


>gi|332639012|ref|ZP_08417875.1| two-component response regulator [Weissella cibaria KACC 11862]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +   +  E    ++++    +  ++  +       
Sbjct: 3   ILIVDDDHEIAELLEIYVKNEGYEPVIASDGREAMTKIRTNPDIGLIILDIMMPD--MNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            E+ + +R  + VP++ +S        +    +G DD V KP +  E++ARV A+ RR  
Sbjct: 61  TEVLKEVRKDNPVPILMLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRAQ 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               + +    + GP+ +  D  +     G    L   E  IL  L ++  +  +   IF
Sbjct: 121 NGMAQATPEVLDIGPLTINKDSHEVKTADGVEVNLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++   +  V    V  H+S LR KL     G   V +   +GY I+ 
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKLEAATGGNQVVQTVWGVGYKIEV 228


>gi|295692613|ref|YP_003601223.1| response regulator [Lactobacillus crispatus ST1]
 gi|295030719|emb|CBL50198.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 240

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 105/235 (44%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEK 59
            ++++D   V +     F  +G   +   + +E  +  + +A + D+  ++  L  K   
Sbjct: 5   ILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKK--D 62

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR
Sbjct: 63  GIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRR 122

Query: 119 LKVSNN-----------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGK 166
           + +                 T  +++  + R+     +    L  +E  +L  +     +
Sbjct: 123 VMMEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPRQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 183 VFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|257469232|ref|ZP_05633326.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063479|ref|ZP_07927964.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689155|gb|EFS25990.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 220

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 102/221 (46%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G  +      E    L      D+  ++  L  K     
Sbjct: 4   ILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIMLPKK--DGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + R I+ +S VP++ +S     +  L  F+ G D+ + KP +++ +LAR+ A+ +    
Sbjct: 62  SVLREIKKYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKALIKNTSN 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++  E G I +        V GE   L  +E  +L YL+ N    +++ ++ + ++G 
Sbjct: 122 NTDHIIELGKIIINDTSHTVTVDGEEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D    +  +++HI  LRKKL    G + + + R +GY  +
Sbjct: 181 YDFPGSDRTIDTHIKNLRKKL----GEECIKTVRGIGYKFE 217


>gi|254518597|ref|ZP_05130653.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912346|gb|EEH97547.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 228

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 17/227 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-----SSAREDVSAIEAFLIGK 56
            +LI+D   ++         D    EGFN +E  +  +      S + D+  ++  +   
Sbjct: 9   ILLIEDETRIR-----FLLRDYFLKEGFNIIEAADGDEGLNFFISNKIDLVILDIMMPKV 63

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
               + +  +IR  S VP+I ++     +  L  ++ G DD + KP   + ++A+V A+ 
Sbjct: 64  --DGITVLEMIRKVSTVPVILLTAKGQEEDKLFGYEMGADDYITKPFSPKILIAKVKALL 121

Query: 117 RRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +R      +   E   + +     + +V  E+  L  +E  +L YL  N G  +++  I 
Sbjct: 122 KRTSEDTFSGLNEYDGLTINKLSHEVKVNNEIINLSPKEFELLSYLSDNEGIALSRDTIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++GL D   +   V+++I +LR+KL NK     + + R  GY  +
Sbjct: 182 DNVWGL-DYYGDLRTVDTNIKRLREKLGNK--ASYIVTVRGSGYRFE 225


>gi|207724242|ref|YP_002254639.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum MolK2]
 gi|206589458|emb|CAQ36419.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum MolK2]
          Length = 224

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G   +   S     +       D+  ++  L   G    
Sbjct: 3   LLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLP--GMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++ R +R     P++ ++    L   L   + G DD + KP    E++ARV  I RR   
Sbjct: 61  QVIRELRRRKPTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILRRGPM 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +   + + +  R     G+   L  +E  +L  L    G+ ++++ I S ++ +
Sbjct: 121 RESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 -NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLD 220


>gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 227

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 106/220 (48%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++   +A   ++  +++   + +  E  Q +   +   I   ++  G    E
Sbjct: 15  LVVEDDPDLRRSLVATLREENYAVDA--AGDGAEGFQRALENEYDVIVLDVMLPGLSGWE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
             + +R     P++ ++   ++Q  +   + G DD + KP    E+LAR+ A+ RR    
Sbjct: 73  FLQKLRPTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAAGQ 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + + +  R    +GE  P+  RE  ++EYL  ++G+ V++T ++  ++   
Sbjct: 133 PQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFDED 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D  +  N+++ H+S LRKKL      + + ++R  GYSI+
Sbjct: 193 DSTL-SNLLDVHVSNLRKKL----APELITTRRGHGYSIE 227


>gi|323485029|ref|ZP_08090382.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
           WAL-14163]
 gi|323693598|ref|ZP_08107799.1| vanr protein [Clostridium symbiosum WAL-14673]
 gi|323401585|gb|EGA93930.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
           WAL-14163]
 gi|323502335|gb|EGB18196.1| vanr protein [Clostridium symbiosum WAL-14673]
          Length = 235

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++ + +  F S E       S   D++ ++  L       L
Sbjct: 5   ILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPD--ISGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR+     P+I ++        +     G DD + KP    E++ARV A  RR K
Sbjct: 63  SICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYK 122

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     ++   +   + +     +  + GE   L   E  IL  L+  +   V+  
Sbjct: 123 KYNAGSAVPAADEIFKYAGLTMNIKTYECRLNGETLSLTPTEFSILRILLERKCSVVSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++F  ++         N +  HI  LR+K+++       + +   +GY I
Sbjct: 183 ELFHEVWQEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKI 232


>gi|229163664|ref|ZP_04291612.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
 gi|228619801|gb|EEK76679.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++  +S E    LQ + +ED   I   ++       
Sbjct: 4   ILLVEDEISIAELQRDYLEISDFQVDVEHSGET--GLQRALQEDYDLIILDIMLPKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|153956233|ref|YP_001396998.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856556|ref|YP_002473678.1| hypothetical protein CKR_3213 [Clostridium kluyveri NBRC 12016]
 gi|146349091|gb|EDK35627.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219570280|dbj|BAH08264.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 230

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 99/226 (43%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G ++   ++L  +E L    + +   I   ++      +
Sbjct: 5   ILIADDNIEIIKILRPYIRKEGFTV--ISALNGKEALDKFEQYNPQIILLDIMMPIFDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IR  S  P+I I+        +   +SG DD + KP    E++AR+ A++RR+  
Sbjct: 63  EVCKLIRLKSNTPIIMITARSEDSDKIWGLNSGADDYIVKPFSPGEVVARIKAVFRRITA 122

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N      +   + +  D    ++ G    L ++E  +L  L     K V++  +   I
Sbjct: 123 HKNNEPSIIKYQHLELDIDNYSVKLDGVSVNLTKKEIEVLWVLSTYPNKIVSRDTLLDEI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +G+ D   +   V++HI ++R KL+    ++  + +   +GY  + 
Sbjct: 183 WGI-DYFGDPRTVDTHIKRIRAKLQLSEQYNRDIKTIWGMGYKFEV 227


>gi|293375785|ref|ZP_06622055.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|325840791|ref|ZP_08167155.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|292645562|gb|EFF63602.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|325490161|gb|EGC92498.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 232

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A   + G  +    +      +  +   D++ ++  +       +
Sbjct: 6   ILIVEDEKDIALAIEAYLTNQGYKVSIAGNGIEALEIVEATPIDLAIVDVMMP--KMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R H   P+I +S        +   + G DD V KP    E+LARV +  RR K 
Sbjct: 64  TFTMKLREHHHFPVIMLSAKSEEVDQIMGLNMGADDYVTKPFRPLELLARVNSQLRRYKR 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S+N    G + + ++ ++  V G    L   E +IL  LM + G+     +I
Sbjct: 124 FSNLLNEESSNVITIGGLELNTETKEFTVDGNAVKLTPIEYKILNLLMKHPGRVFPTEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+   + A+  + +  HI  +R+K+  N      +     +GY ++
Sbjct: 184 YERIWN--ETAINTDTIMVHIRNIREKIEINPKNPKYLKVVWGVGYKLE 230


>gi|282852927|ref|ZP_06262268.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
 gi|282556035|gb|EFB61656.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
          Length = 228

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  ++  E    L ++    +  ++  +       
Sbjct: 3   ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQ--MSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  S++P++ +S   S    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  IEVIKEVRKDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+V  L   E  IL  L ++  +  +  +IF
Sbjct: 121 KEVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYILASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|196033613|ref|ZP_03101025.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195994047|gb|EDX58003.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 232

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKV--FSAYNGEEALEIINNNSIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|325523281|gb|EGD01637.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 240

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   +S +  E L+   +    A+   L+  G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEV--VHSADGAEGLRLLEQGGWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRIDAGTLDIAGLSIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G   E   E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWGYRHE-GYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|255321050|ref|ZP_05362220.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262379549|ref|ZP_06072705.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255301874|gb|EET81121.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262299006|gb|EEY86919.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 219

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +        DG S++     ++          +   ++  L        
Sbjct: 3   ILLVEDDTSQGESIKTWLELDGYSVDWVERGDYAMTALKQHDYECILLDRGLPYA--SGD 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R H +Q P+I ++   S+   ++  D G +D + KP    E+ AR+ +  R L+
Sbjct: 61  EILKTLRQHQAQTPVIFLTARDSISDRVEGLDLGANDYLVKPFSLEELSARIRSQMRNLQ 120

Query: 121 VSNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++      I +    +  + +GE   L  RE +IL  LM +    V + Q+  +IY 
Sbjct: 121 AGQSQTLIWNNICLDPKAKTVQQEGESRDLTAREFQILYKLMQHPNHVVTREQLEESIYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE VE N +E +I +LRKKL    G   + + R LGY +
Sbjct: 181 WGDE-VESNAIEVYIYQLRKKL----GSQTIRTIRGLGYRM 216


>gi|254518278|ref|ZP_05130334.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912027|gb|EEH97228.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 229

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       + G  +  F + + ++ L+    E ++     L+  G    
Sbjct: 4   ILIVDDEKEIVDLIDLYLRNKGYCI--FKAYDSDKALEILNLEKINLAIMDLMMPGTDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR+ S +P+I IS        +   D G DD + KP    E++ARV A  RR  +
Sbjct: 62  DLIKKIRSTSNIPIIIISAKCENHDKVIGLDIGADDYITKPFDPLELIARVNAQLRRCYL 121

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N      N  ++  + +  D       G+   L  +E ++LE  M N+ K + K +IF 
Sbjct: 122 LNLEDNNENIIKSRDLILDKDKIIVTKGGKEVFLTLKEFKLLELFMENKNKVLTKQRIFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            I+   +   ++NV+  HIS LR K+ +       + + R +GY  +
Sbjct: 182 NIW-KEEYLYDDNVIMVHISNLRDKIEDNNKENKYIKTIRGIGYRFE 227


>gi|259908032|ref|YP_002648388.1| DNA-binding transcriptional regulator BaeR [Erwinia pyrifoliae
           Ep1/96]
 gi|224963654|emb|CAX55151.1| Two-component system response regulator [Erwinia pyrifoliae Ep1/96]
 gi|283477929|emb|CAY73845.1| probable transcriptional regulator ycf27 [Erwinia pyrifoliae DSM
           12163]
 gi|310768055|gb|ADP13005.1| DNA-binding transcriptional regulator BaeR [Erwinia sp. Ejp617]
          Length = 235

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 5/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +    I                +           D+  ++  L   G   
Sbjct: 9   LILIVEDEPKLGQLMIDYLQAAHYRTHHLLRGDEVVDWVKHHTPDLVLLDLMLP--GMNG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +R  S++P++ ++        L   + G DD + KP   RE++ARV  I RR +
Sbjct: 67  LSVCRELRRFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKTILRRCR 126

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++      P+ +           +   L   E R+L+ L    GK  ++  + + +Y 
Sbjct: 127 RETDEALNISPLLIDEKRFQASWDDKPLDLTPAEFRLLKTLAQQPGKVFSREHLLNHLYD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
            +   V +  ++SHI  LR+KL +     P + +   +GY  + +
Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLESLDAEQPFIRAVYGIGYRWEAD 230


>gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 223

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMP--GMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|119025684|ref|YP_909529.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765268|dbj|BAF39447.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 240

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 16/228 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +    +         S+ R D+  ++  L       LE
Sbjct: 16  LVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAASTLRPDLVIMDIMLPV--MDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
             + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR    
Sbjct: 74  ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 119 ---LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               K S N    + G + +    R   V GE   L   E  +L  L       + + ++
Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++   D +     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GSKTIRTVHGVGYAFE 236


>gi|115360729|ref|YP_777866.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria AMMD]
 gi|115286057|gb|ABI91532.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria AMMD]
          Length = 225

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPV--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+  + RR   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETERIVIGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFSVKLIHTVRGVGYVLE 220


>gi|331001460|ref|ZP_08325078.1| transcriptional regulatory protein QseB [Parasutterella
           excrementihominis YIT 11859]
 gi|329568189|gb|EGG50006.1| transcriptional regulatory protein QseB [Parasutterella
           excrementihominis YIT 11859]
          Length = 227

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +        +G +++             +    +  ++  L   G+  L
Sbjct: 12  ILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLP--GKDGL 69

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + IR   +  P++  +   ++   ++  D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 70  AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 129

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G + +    R+    GE   L  +E  +L  L    G  +++ Q+   +Y 
Sbjct: 130 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLYN 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  +  N +E HI  LRKKL      D + + R +GY ++
Sbjct: 190 -YESLIGSNAIEVHIHHLRKKLSE----DSIKTVRGVGYVLE 226


>gi|167760380|ref|ZP_02432507.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704]
 gi|167662053|gb|EDS06183.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704]
          Length = 231

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   + +        +   +   F+ LE  E  +     D+  ++  +       
Sbjct: 3   ILLVEDDREISEMLEEFLIQEAFEVVPAFDGLEACEKFED-GEFDLVLLDLMIP--KMSG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +++ + IR  S VP++ +S   SL       + G DD + KP    E+LAR+ A  RR  
Sbjct: 60  MDVMKTIREKSVVPILIVSAKDSLLDKSLGLELGADDYITKPFVMAEVLARIKANLRRTN 119

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +        G I++         +G+   L  +E  IL  LM N  K   K
Sbjct: 120 QYAAGSSRKQEEPATLSCGDIQLNPADFTVRKRGKKIDLTAKEFEILRLLMQNPKKVYTK 179

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            QI+S ++       +EN V  HIS+LR K+ +     + + +    GY I
Sbjct: 180 EQIYSLVW-EDAYLGDENAVNVHISRLRNKIEDDARNPEYIITVWGFGYRI 229


>gi|91778359|ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gi|296159926|ref|ZP_06842747.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
 gi|91691019|gb|ABE34217.1| Hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gi|295889909|gb|EFG69706.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
          Length = 223

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G +++   +      +      D+  ++  L   G    
Sbjct: 3   ILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLP--GIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E+ R +RA   +P+I ++    +   +   + G DD + KP    E++ R+  + RR + 
Sbjct: 61  EIMRALRARRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGVT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++  E   +++    R    +G   PL  +E  +L  L+  +G+ +++TQI S ++ +
Sbjct: 121 RESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+  I +LR K+ +      + + R +GY+ 
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDHPFEKKLIHTVRSIGYTF 219


>gi|67924495|ref|ZP_00517917.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67853668|gb|EAM49005.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 236

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 95/234 (40%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +          +    L  ++ L   +  Q+    D+  ++  L       
Sbjct: 3   ILIVEDEMEIAKIIQTTLERESFDCLVAYDGLTALDLFQNQ-EPDLIILDLMLP--KLDG 59

Query: 61  LELPRIIRAHSQV--P-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+   IR  +    P ++ ++        +    +G DD + KP    E+LARV A+ R
Sbjct: 60  LEVCTRIRQKTTTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELLARVRALLR 119

Query: 118 RL----KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRV 168
           R        NN  ET    V  D      +      E+  L   E  +L   M+  G+  
Sbjct: 120 RSLRHGGTQNNVYETSHFMVDLDKHSAIKKADNNTEEILELTTLEFNLLSTFMSYPGRVW 179

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++TQ+   ++G  D   +E VV++H+ +LRKK+  K      + +   +GY  +
Sbjct: 180 SRTQLIDKLWGN-DFFGDERVVDTHVRRLRKKIEPKTANPTFIKTVVGVGYKFE 232


>gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 246

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + D        +G  +                R D   ++  L        E
Sbjct: 23  LVVDDESTLSDLLSMALRYEGWEVRTAGDGATAVRHAREFRPDAIVLDVMLPDV--DGFE 80

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA + +VP++ ++   +++  +    +G DD V KP    E++AR+  + RR  +
Sbjct: 81  VLRRVRAGTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRAGM 140

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    ++    G + +  D  +         L   E  +L YLM N  + ++K QI   +
Sbjct: 141 AAAQRSSELVVGDLVLDEDAHEVRRADRPIELTATEFELLRYLMRNPRRVLSKAQILDRV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE ++S LRKK+ +      + + R  GY +
Sbjct: 201 WN-YDFGGQSNVVELYVSYLRKKI-DAGYAPMIHTVRGAGYVL 241


>gi|319406896|emb|CBI80531.1| two-component system regulatory protein [Bartonella sp. 1-1C]
          Length = 222

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G   +   + E   +L S+   D   ++  L       +
Sbjct: 3   ILIVEDDRDLNHQLAKAVKDAGYVFDSAFNGEDAYFLGSTESYDAVILDIGL--SCMDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++  R  +    +P++ ++        +   D+G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  QVVERWRKEGYSMPVLMLTARDCWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N    G + + +      ++G++  L   E R+L YLM +  K V+KT++   +Y 
Sbjct: 121 GHATNTLSCGEVLLDTKTSRVFIEGQLIKLTSYEFRLLSYLMHHSDKVVSKTELIEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKKL    G D +++ R LGY I
Sbjct: 181 Q-DFDKDSNTIEVFIRRLRKKL----GVDSIETVRGLGYRI 216


>gi|307244117|ref|ZP_07526235.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492488|gb|EFM64523.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 226

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 102/226 (45%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +    S E  + ++   RE    +    +      +
Sbjct: 3   ILVIDDEEHILELLKFNLELSGFDVCV--STEANQTIELIGREKPDLLLLDWMLPKISGI 60

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + IR    +   P+I ++        +   + G DD + KP   +E++AR+  + RR
Sbjct: 61  DILKKIRQDEDIYDLPVIMLTAKNMEDDKIQGLNVGADDYITKPFSIKELMARINTVLRR 120

Query: 119 LKVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++S+      E G I + +D     V G    L R+E  +L+ LM NRGK + +  +  
Sbjct: 121 YRISDKSQPVIEAGNIVLNTDQYKLTVDGLKVDLTRKEFELLKLLMENRGKVLKRDYLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G ++   E   V+ HI  LRKKL  ++   + +D+ R LGY +
Sbjct: 181 KVWG-YEFYGETRTVDVHIRHLRKKLGLDETSENGIDTIRGLGYKM 225


>gi|291534287|emb|CBL07399.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 224

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 89/218 (40%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L +D   +    +    +DG S++          + S    D   ++  +        
Sbjct: 3   IFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIMMPKA--DGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119
            + R +R      P++ ++   ++   +   DSG +D + KP    E+ AR+ A+ R   
Sbjct: 61  TVLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEELSARLRAMMRGSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V++N      + +          G+   L  +E  +LEY M N+G+ +++  I   ++ 
Sbjct: 121 GVTDNVLHIADLSLDCTSHRVMRGGKEITLSAKEYAMLEYFMYNQGRVLSREMIEDHVWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
            FD     N+V+ +IS LRKK+        + + R  G
Sbjct: 181 -FDYEGGTNIVDVYISYLRKKIDGGYDKKLIHTVRGRG 217


>gi|255526544|ref|ZP_05393453.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187650|ref|ZP_06856044.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509794|gb|EET86125.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047607|gb|EFG87047.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +G  +    + E    L       +  ++  L        
Sbjct: 7   ILVVDDEPNIVEVVEAYLRKEGFQVVTAENGEKALRLFKEEVIHLVILDLMLPR--ISGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IRA S VP+I ++     +  +     G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EICNKIRAVSDVPIIMLTAKSEEEDKISGLAIGADDYLTKPFSVRELVGRVKALIRRTYR 124

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++          G + V       +  GE   L   E ++L  L+ N G+  ++ Q+  
Sbjct: 125 DSSPLADYLLFNNGDLEVQIKKMKVKKAGEYVNLTANEFKVLLALLTNPGQVFSREQLVQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +G  D    +  ++S+I  +R+K+ +       + +   +GY  
Sbjct: 185 KAFGE-DYEGFDRTIDSYIKNIRQKIEDNHKEPKYIITVYGIGYKF 229


>gi|78223889|ref|YP_385636.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78195144|gb|ABB32911.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 226

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 100/229 (43%), Gaps = 19/229 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++I+D   + +        +G       +G + L+  +        D+  ++  L   G 
Sbjct: 5   LIIEDEKDLAELVSFNLEKEGYRTIAAPDGISGLDEAQRQV----PDLILLDLMLP--GM 58

Query: 59  KVLELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
              E+ +I++     +++P+I ++        +  F+ G DD V KP   RE+L R+ A+
Sbjct: 59  MGTEVCKILKKSEKTAKIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRIKAV 118

Query: 116 YRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            RR    + S      GPI +  D     V GE   L   E ++L  L    G+  ++  
Sbjct: 119 LRRSLPDEPSGKTMRIGPIAIDPDRHTVAVAGEEIVLTTTEFKLLLNLAERLGRVQSRDL 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++G ++   +   V++HI++LR KL      D + + R  GY ++
Sbjct: 179 LLKNVWG-YNYVGDTRTVDTHITRLRTKLGPAG--DLIKTVRGFGYKME 224


>gi|291086647|ref|ZP_06356333.2| QseB [Citrobacter youngae ATCC 29220]
 gi|291067320|gb|EFE05429.1| QseB [Citrobacter youngae ATCC 29220]
          Length = 234

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 15  ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLESGHYSLVVLDLGLPD--EDGL 72

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     VP++ ++   +++  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 73  HFLNRIRQKKYTVPVLILTARDTVKDRVSGLDVGADDYLVKPFALEELHARIRALLRRHN 132

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      + +    R   + G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 133 NQGESELIVSNLTLNIGRRQVWMDGQEIILTPKEYALLSRLMLKAGSPVHREILYNDIY- 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 192 SWDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 228


>gi|229105451|ref|ZP_04236094.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228678007|gb|EEL32241.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 229

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEVDVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|170700827|ref|ZP_02891817.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
 gi|170134275|gb|EDT02613.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
          Length = 225

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPV--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+  + RR   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220


>gi|145297360|ref|YP_001140201.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850132|gb|ABO88453.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 218

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   +  +      +L  +   D   ++  L   G   L
Sbjct: 3   ILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLP--GRDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +  R+     P++ ++    L   ++  ++G DD + KP    E++ARV A+ RR  
Sbjct: 61  SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++  E G +R+         +G    L   E R+L YLM +RGK V+++++   IY 
Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N VE  I ++RKK       D +++ R LGY I+
Sbjct: 181 Q-DFDRDSNTVEVFIGRIRKK----THADLIETVRGLGYRIN 217


>gi|118443624|ref|YP_877546.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134080|gb|ABK61124.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 232

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+ +  F + +  + L     +++  I   ++      ++
Sbjct: 7   LVVDDDKEIREAIKIYLKNEGIKV--FEAKDGIDALMLLQEQEIHLILMDIMMPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIREKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVKF 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K ++   + G I +  + +   V GE   L   E +ILE+LM + G+  +  QI+  
Sbjct: 125 NNYKSNSQELKVGGIILNKNTKSVSVDGEEVRLTPIEYKILEFLMESTGQVFSIEQIYEN 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 VWNEPCYNAE-NTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKI 228


>gi|299532441|ref|ZP_07045833.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298719679|gb|EFI60644.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 238

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D       D+G+ +   +    ++ L    R    A+   L+  G   L
Sbjct: 7   ILLVEDDAHIADLLSLHLRDEGLEV--VHCARGDDGLAHLERGGWDALVLDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I IS   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++ +       + +    R+  + G    L  RE  +L +     GK  ++  +
Sbjct: 125 ALAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  N      + +    GY  
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKVELNPAQPTRILTVWGRGYKF 231


>gi|262275374|ref|ZP_06053184.1| DNA-binding response regulator [Grimontia hollisae CIP 101886]
 gi|262220619|gb|EEY71934.1| DNA-binding response regulator [Grimontia hollisae CIP 101886]
          Length = 218

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +      G +++        + L  +       ++  L       L
Sbjct: 3   ILLVEDDQMLGESMVVSLSRQGFTVDWVQLGNGVDTLVKTESFTAVILDLTLPDT--DGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +R  ++ +P++ ++    +   +   D G DD + KP    E++AR+  + RR  
Sbjct: 61  QVLKQVRRVNATLPIMILTARDEIGDRVKGLDGGADDYMIKPFALEELMARLRVMIRRIS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+       + +        V GE   L   E ++L  LM++ G+ ++K Q+  +++G
Sbjct: 121 GFSDTNISLHGVSLSLANNCVTVNGEAIKLTPNEFKLLSTLMSHAGRVMSKDQLQQSLHG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D+   +N +E HI  LRKK+    G + + + R +GY I+
Sbjct: 181 -WDDMASDNAIEVHIHNLRKKM----GGELIKNIRGVGYIIE 217


>gi|170782486|ref|YP_001710819.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157055|emb|CAQ02228.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 236

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++   ++    +   + G  S    E        D+  ++  L   G   ++
Sbjct: 22  LVVEDDQAIRAAVVSTLTAERFVVRGLASGVELEEEVKGFLPDLVVLDWMLP--GPSGIQ 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR  S   +I ++   +++  L  F  GVDD + KP    E++ARV A+ RR    
Sbjct: 80  LAERIRRWSDAGVIMLTARDAVEDRLRGFGHGVDDYIVKPFALAELVARVGAVLRRRGRL 139

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  E G + V  D       GE   L   E ++L YL A+RG+ ++KTQ+ + ++G +D
Sbjct: 140 ASVVEIGDLLVDPDAGLARRGGEPLELTSIEFQLLAYLAAHRGRTLSKTQLLTQVWG-YD 198

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A + N+VE HIS LRKK+    G   + + R LGY ++
Sbjct: 199 HA-DPNLVEVHISALRKKME-AHGPRLLHTVRGLGYRVE 235


>gi|160936708|ref|ZP_02084075.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440499|gb|EDP18244.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC
           BAA-613]
          Length = 231

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L+ +         G  +E     +  E L  +      A+   ++  G+   E
Sbjct: 5   LIVEDDELIAELERDYLEAGGFEVELI--FDGNEGLNRAMAGGWDALILDVMLPGKSGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY------ 116
           + R +R    +P+I ++        +     G DD + KP    E++ARV +        
Sbjct: 63  VCREVRKSLHLPVIMVTAKKEDVDKIRGLGLGADDYLVKPFSPAELVARVKSHIQIHERL 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              R +   +      + +    R   + GE   L  +E  +L +L  N     +K  +F
Sbjct: 123 LEHREQQKEDAIIVKNLAIRPKERRVYLNGEEMNLANKEFEVLLFLAENPNIVFSKDTLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             I+G+ D       V  HI++LR+KL       P +++    GY  
Sbjct: 183 DRIWGM-DSVGNTATVTVHINRLREKLEKNADSSPFIETVWGAGYRF 228


>gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
 gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
          Length = 269

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +      +         R D   ++  L       L 
Sbjct: 46  LVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPD--MDGLT 103

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRAGA 163

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R+E     G + +  D  +    G+   L   E  +L +LM N  + ++K QI   +
Sbjct: 164 ADRRSESVLVVGDLTLDEDSHEVSRGGQDIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 224 W-SYDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 264


>gi|260682102|ref|YP_003213387.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685700|ref|YP_003216833.1| two-component response regulator [Clostridium difficile R20291]
 gi|260208265|emb|CBA60671.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211716|emb|CBE02025.1| two-component response regulator [Clostridium difficile R20291]
          Length = 244

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    R  +S +   ++       +
Sbjct: 16  LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDIDGFQ 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P+I ++        +     G DD + KP    E++ARV ++ RR  + 
Sbjct: 76  VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 135

Query: 123 NNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N              + +    R   +      L  +E  +L +L +N+G+   K QI++
Sbjct: 136 NPAFITDTDCIIINGMIIDKTNRIVSINNIPVQLTSKEFDLLAFLASNKGRVFTKKQIYT 195

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   + A +++ + S ISKLRKK+  +      + + R +GY  +
Sbjct: 196 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFN 241


>gi|228935978|ref|ZP_04098788.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823746|gb|EEM69568.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 229

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQIDVEHSGETGLQMALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|229196123|ref|ZP_04322874.1| Two-component response regulator vanR [Bacillus cereus m1293]
 gi|228587357|gb|EEK45424.1| Two-component response regulator vanR [Bacillus cereus m1293]
          Length = 242

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E++ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|210612997|ref|ZP_03289562.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
 gi|210151360|gb|EEA82368.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
          Length = 223

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D       + G  +   +       L SSA  D+  ++  L        
Sbjct: 4   ILIVEDDLDIQDLLRNFLQEVGYEITIASDGMEAIALFSSAHFDLILLDIMLP--KIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +  +IR  SQVP+I ++     +  +   D  VDD + KP     ++ ++ A+ RR   
Sbjct: 62  TVCELIRKQSQVPIIMLTALNGEEEQIRGLDLQVDDYITKPFSMPILVRKIGAVLRRSSM 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  +       + +  D     V G  F L +RE  +L  L+ N+G+ + +  +   +
Sbjct: 122 IPEQEHQTITYKNLVLDMDSYTAVVDGVSFDLTQREFEVLRELLLNQGRVLTRQNLLDKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +D   +E VV++HI  LRKKL    G D + + R +GY ID
Sbjct: 182 W-KYDFYGDERVVDTHIKNLRKKL----GIDFIQTIRGVGYKID 220


>gi|116332987|ref|YP_794514.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098334|gb|ABJ63483.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 233

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 106/232 (45%), Gaps = 18/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-------REDVSAIEAFLI 54
            +L++D     +G  +    + ++ E F+ L   +   +         R  +  ++  L 
Sbjct: 5   ILLVEDE----EGLASYVAKE-LTFEDFDVLTATDGAAAWEIYQQKKDRLLLVLLDWMLP 59

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                 +E+ R IR H ++P+I ++    L   +   D+G DD + KP    E+LAR+  
Sbjct: 60  --KMDGMEVLRRIRKHDELPVIMMTARDYLGDKVTGLDNGADDYITKPFEIEELLARIRV 117

Query: 115 IYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           I RR    +   +T   G + + +  R  +  G+   L +RE  +L +LM + G+   + 
Sbjct: 118 IQRRTAHQSGLDQTYHLGDLTLVTKTRQVDRAGDTIQLTQREYDLLLFLMQHPGQVFTRD 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   ++G+ D   ++NVV+ +I  LR K+          + R +GYS+  +
Sbjct: 178 ELLDNVWGV-DFLGQQNVVDVYIGYLRNKIDVAAAPHLFHTVRGVGYSLKED 228


>gi|77917975|ref|YP_355790.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544058|gb|ABA87620.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
          Length = 224

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +                                  +  ++  L   G   +
Sbjct: 5   ILIVEDESRLSSLLADYLRQANFEPHILADGLPVVSWVRDNHPSLILLDLMLP--GRDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR   
Sbjct: 63  EICKEIRGFSDVPIIMVTARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSGG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +N   +  + +        + G    L   E ++L++L A+ G+  ++ Q+   IY   
Sbjct: 123 QSN-LHSQGLTLEEASLHANLNGCKLDLTAVEFKLLQHLAAHPGRIFSREQLMDRIYADR 181

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              V +  ++SHI KLRKK+     G D + S   +GY  +
Sbjct: 182 -RIVSDRTIDSHIKKLRKKMDTASPGVDLIRSVYGVGYKFE 221


>gi|15828317|ref|NP_302580.1| two-component system response regulator [Mycobacterium leprae TN]
 gi|221230794|ref|YP_002504210.1| putative two-component system response regulator [Mycobacterium
           leprae Br4923]
 gi|1731206|sp|P54884|REGX3_MYCLE RecName: Full=Sensory transduction protein regX3
 gi|467058|gb|AAA17242.1| phoP [Mycobacterium leprae]
 gi|13094010|emb|CAC31956.1| probable two-component system response regulator [Mycobacterium
           leprae]
 gi|219933901|emb|CAR72538.1| probable two-component system response regulator [Mycobacterium
           leprae Br4923]
          Length = 198

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 9/192 (4%)

Query: 37  WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96
            L    R     +   L+  G    ++ + +R  S VP+I ++   S    +   + G D
Sbjct: 8   ALAEFDRSGADIVLLDLMLPGMSGTDVYKQLRVRSSVPVIMVTARDSEIDKVVGLELGAD 67

Query: 97  DVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151
           D V KP   RE++AR+ A+ RR      ++S+   E+GP+R+  +     V G    LP 
Sbjct: 68  DYVTKPYSARELIARIRAVLRRGGDDDSEISDGVLESGPLRMDVERHVVSVNGYAITLPL 127

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           +E  +LEYLM N G+ + + Q+   ++G+ D   +   ++ H+ +LR K+      +PV 
Sbjct: 128 KEFDLLEYLMRNSGRVLTRGQLIDRVWGV-DYVGDTKTLDVHVKRLRSKIEADPA-NPVH 185

Query: 212 --SKRFLGYSID 221
             + R LGY ++
Sbjct: 186 LVTVRGLGYKLE 197


>gi|293374574|ref|ZP_06620892.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292646807|gb|EFF64799.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 230

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 8/226 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +IDD A ++   +     +G  +  F + E      +  + D   ++  + G     L+L
Sbjct: 6   VIDDDANIRQLILRYLEKEGYKVTAFKNAEHVFEAFNMLQPDALVLDIMMPGT-MDGLDL 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121
            + IR  SQVP+I +S        +   + G DD ++KP   RE+L R+  I+RR++   
Sbjct: 65  CKKIRTVSQVPIIFVSAKDEAVDRIIGLELGADDYLSKPFSPRELLVRLKIIFRRIEPVM 124

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   +++    R   V+ +   L   E  +L YL+ N+     +  +   I
Sbjct: 125 VSDHETTTYQIKDLKIDDSKRVCSVKDKELSLTNNEYMLLAYLVKNKNISFTRENLIQNI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   E  +++  + +LRKKL++      + +    GY ID N
Sbjct: 185 WG-YDYVGESRMIDDLVKRLRKKLKSFDAQVEITTVWGYGYRIDDN 229


>gi|229019899|ref|ZP_04176696.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
 gi|228741389|gb|EEL91592.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
          Length = 229

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|228987919|ref|ZP_04148027.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229158275|ref|ZP_04286342.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
 gi|228625233|gb|EEK81993.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
 gi|228771842|gb|EEM20300.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 229

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +            ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + N  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|189348733|ref|YP_001941929.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221215703|ref|ZP_03588664.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD1]
 gi|189338871|dbj|BAG47939.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221164405|gb|EED96890.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD1]
          Length = 239

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   +S +  + L+   +    A+   L+  G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEV--VHSADGAQGLRLLEQGGWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|332523540|ref|ZP_08399792.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus porcinus str. Jelinkova 176]
 gi|332314804|gb|EGJ27789.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus porcinus str. Jelinkova 176]
          Length = 236

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G   E          L  S   D   ++  L       +E
Sbjct: 6   LLVDDEEHILRLLDYHLSKEGYETELVEDGRTALKLAESEHYDFILLDIMLPQ--LDGIE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IRA   Q P++ +S        +   + G DD + KP   RE++AR+ AI RR   
Sbjct: 64  VCKRIRAKGIQTPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELVARLKAILRRTDK 123

Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +NR +              + ++ +  +      +  L  +E  +L YL+ +    + +
Sbjct: 124 EDNRQDNSERFAEETWTFDNLVIYPERHEIYKDKILLNLTPKEFELLLYLVKHANMTLTR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++   I+G +D   E  +V+ HI KLR K+ +       + + R  GY  
Sbjct: 184 ERLLERIWG-YDFGQETRLVDVHIGKLRDKIEDDPKNPKFIKTIRGYGYKF 233


>gi|300715486|ref|YP_003740289.1| two component heavy metal response transcriptional regulator
           [Erwinia billingiae Eb661]
 gi|299061322|emb|CAX58431.1| Two component heavy metal response transcriptional regulator
           [Erwinia billingiae Eb661]
          Length = 224

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD    ++   +   + G  ++   +     ++      D+  ++  +        
Sbjct: 3   ILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGLFMAQEYHYDLILLDVMMPE--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + + A   +P+I ++   +++  +   + G DD + KP    E+LAR+    RR   
Sbjct: 61  EVMKTLDAQ-NIPVIFLTAKSTVEDRIKGLELGADDYLVKPFSFAELLARIRTALRRGAN 119

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   + G +++    R  E  G    L  +E  +L+  M N G+ +++T I S ++ 
Sbjct: 120 VKRDELLQVGDLQLDRAKRRVERAGVRIDLTNKEFNLLQLFMLNPGQVMSRTLIASRVWD 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVV+  + +LR+K+        + +   +GY  +
Sbjct: 180 M-NFDSDTNVVDVAVRRLRQKVDEPFATPLIHTVHGVGYRCE 220


>gi|254501704|ref|ZP_05113855.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437775|gb|EEE44454.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 222

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +    +    + G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   LLIVEDDKDLNRQLVTALEEAGYVVDSAFDGEEGHFLGDTEPYDAVVLDLGLPTLDGLSV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  +  R    +P++ ++        +   D+G DD V KP H  E+LARV A+ RR  
Sbjct: 63  LE--KWRRDGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G +R+        V G    L   E R+L YL+ ++GK +++T++   +Y 
Sbjct: 121 GHASNELTCGNVRLDLRAGRVTVDGSPIKLTSHEYRLLSYLLHHQGKVISRTELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N VE  + +LRKK+    G + +++ R LGY +
Sbjct: 181 Q-DFDRDSNTVEVFVGRLRKKI----GAEMIETIRGLGYRL 216


>gi|157377522|ref|YP_001476122.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319896|gb|ABV38994.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 225

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   +  +  F + G ++E  +       L +S + D+  ++  L       L
Sbjct: 3   ILLVEDDATTIEYVVKGFMEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQ--LDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R  
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGF 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     G + +    R   + G    L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SQPADTELSVGNLVMELLTRKVTLDGTELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221


>gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 10/222 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        DG  +   +  +    L +  R    A+   +   G   
Sbjct: 4   LVLVVEDEPAIADLIRLYLRKDGFGVHVEH--DGAAGLDAVRRLAPVAVVLDVGLPGLDG 61

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ R +RA     P++ ++        +   + G DD V KP   RE++ARV  + RR 
Sbjct: 62  VEVCRRLRAADDWTPVLFVTARDDEVDRILGLEMGADDYVTKPFSPRELVARVRTVLRRS 121

Query: 120 KVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                R E    G + V  D R          L   E  +L +LM   G+  ++ Q+ SA
Sbjct: 122 GTGAPREEVLRVGEVEVQVDRRRVRAGTTEVALTATEFALLAHLMRAPGRVYSRDQLLSA 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G    +     V+ H+++LR KL +     P+ + R +GY
Sbjct: 182 VWGYTASSG-ARTVDVHVAQLRAKLGDA---SPIRTVRGVGY 219


>gi|224584977|ref|YP_002638776.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224469505|gb|ACN47335.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 219

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R  R    Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 121 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 181 -WDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 216


>gi|91792622|ref|YP_562273.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91714624|gb|ABE54550.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 243

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        +   SL+  +  E   +       D + I+  L       +
Sbjct: 3   LLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLP--KLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L + +R      P++ ++   S Q  +   D+G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP  V     + +    +  L   E ++ E+LM + G+  +K+ +   IY 
Sbjct: 121 GKASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  ++ NV+E  I +LRKKL     +  +++ R  GY ++
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRLN 221


>gi|322435322|ref|YP_004217534.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321163049|gb|ADW68754.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 239

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 101/226 (44%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D A +           G ++  + +++  + +  + R+  S     ++  G   L
Sbjct: 10  IFVLEDDADISRLVQYHLESAGFTVRPYAAIQ--QIVSDAERQPPSLFLLDIMVPGGDGL 67

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R +R +     VP+I ++   +    +   + G DD + KP   RE++ARV A+ RR
Sbjct: 68  DLCRRLRLNPTLSVVPIIFLTARAAENDRVQGLELGADDYITKPFATRELVARVKAVLRR 127

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   + +  +   I + +      V+GE+      E R+L+YL  + G+  ++  +  A
Sbjct: 128 FERPTTPSILKFEQIEIDAGAMQLRVKGELVTTTATEFRLLDYLARHPGRVFSRDHLLDA 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++G     V    V+ ++ ++R+K+         + + R  GY  +
Sbjct: 188 VWGDA-RFVTPRSVDVYVRRIREKIEEDAETPRYLKTMRGAGYRFE 232


>gi|148545276|ref|YP_001265378.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031040|ref|YP_001666271.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719204|ref|YP_001746892.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|148509334|gb|ABQ76194.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
 gi|166857528|gb|ABY95935.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757207|gb|ACA70523.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 225

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +         + G +++    +   + LQ +  E    +   ++  G    
Sbjct: 3   LLVAEDEPKIGAYLQQGLTEAGFTVD--RVVTGTDALQYALSEAYDLLILDVMMPGLDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R++RA   +VP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EVLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   + V    R     G+   L  +E  +LE LM  RG+ + K+ I S ++
Sbjct: 121 SGYAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  + +LR K+ +      + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIEVAVRRLRAKIDDDFAPKLIHTVRGMGYLMDV 223


>gi|228914504|ref|ZP_04078113.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228844823|gb|EEM89865.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 242

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKV--FSAYNGEEALEIINNNSIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEADPKEPKFIQNVWGVGYKIE 241


>gi|146283707|ref|YP_001173860.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
 gi|145571912|gb|ABP81018.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
          Length = 244

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D             + G +++   +         S   D+  ++  +   G    
Sbjct: 22  LLVAEDEPKTGSYLQQGLTEAGFTVDRVTTGTDALQYALSEVYDLLILDVMMP--GLDGW 79

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R A  ++P++ ++    ++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 80  EVLRMVRSAGHEIPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGS 139

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S      +   + V    R     G+   L  +E  +LE LM  RG+ + K+ I S ++
Sbjct: 140 GSPTQTTVKISDLEVDLLKRRAVRAGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 199

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  + +LR K+ +      + + R +GY +D
Sbjct: 200 DM-NFDSDTNVIEVAVRRLRAKVDDDFEHKLIHTVRGMGYMMD 241


>gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
 gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
          Length = 231

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 90/229 (39%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  ++   S             D++ ++  L        
Sbjct: 5   ILVVDDEKAIADLVGIYLTKEGFDVQIAYSGADAAKAILEQEFDLALLDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR+    P+I ++   + Q  +     G DD V KP    E++ARV A  RR   
Sbjct: 63  ELLRTIRSSHTYPVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQLRRYTS 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +R         +   + +  D R   V G    L   E  IL YL+ +RG  VA   +
Sbjct: 123 YGSRAQAAESPTIQLDGLEINRDARSVTVDGSPVRLTPTEYSILLYLVEHRGSVVAVEDL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           F A++         N V  HI  LR+K+ +       + +   +GY I+
Sbjct: 183 FRAVWNEDFMPGSNNTVMVHIRHLREKIGDDAQKPRFIKNVWGVGYIIE 231


>gi|312622290|ref|YP_004023903.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202757|gb|ADQ46084.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 232

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +   F +      L+      V  +   ++   +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYN--TFEADSGILALEILKHNKVDLVILDIMMSDKDGY 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR       +P+I +S        +   + G DD + KP   +E++ RV A+ RR
Sbjct: 62  EVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 119 LKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++      E     G + V    R  +   +  PL  +E  +L+ L+ NRG+ + +  I 
Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVPLSFKEFELLKLLIENRGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  +
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFN 228


>gi|300787588|ref|YP_003767879.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797102|gb|ADJ47477.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 228

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A++ +       D+   +    + E    L  S   DV  ++  L   G   L 
Sbjct: 8   LLVEDDAMISEALSLALTDEDFDVLAAATGEDGLDLLESTSVDVVLLDLMLP--GIDGLT 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R H  +P+I I+        +   ++G DD V KP+   E+ AR+ A+ RR   +
Sbjct: 66  VCRRVREHGDLPIIVITARTDTHDVIAGLEAGADDYVTKPLVAGELAARIRALLRRTASA 125

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R   G + +  D       G    L R E R+L  L A  GK V + Q+   ++G  
Sbjct: 126 RPARFSVGRLEIRPDEEAVHRDGVPVHLTRTEFRLLTELAAAEGKVVTREQLLQRVWG-H 184

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           D   +  +++ HI +LR+K+  +      V + R  GY I
Sbjct: 185 DYFGDTRLLDVHIRRLRRKVEPDPDAPSLVLTVRGSGYRI 224


>gi|212716927|ref|ZP_03325055.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660212|gb|EEB20787.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
          Length = 243

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+      D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGLTVEDENGEKRKVAPLIETKRGIGYMI 238


>gi|88857480|ref|ZP_01132123.1| response regulator [Pseudoalteromonas tunicata D2]
 gi|88820677|gb|EAR30489.1| response regulator [Pseudoalteromonas tunicata D2]
          Length = 219

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 9/218 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L+  G +     +G S +   + +   +    A  D+  ++  L       L 
Sbjct: 4   LIVEDDQLLAQGLLHTLRHEGYSADHCATAKSALFAIDMAEADLIILDLGLPD--MDGLA 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           L + +R      P++ ++        +   D G DD + KP    E+LAR+  + RR+ K
Sbjct: 62  LLKQVRKKYATLPVLVLTARDGTDDKIKGLDLGADDYLAKPFEVTELLARLRVMTRRIGK 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++  E G + +          G    LPR+E  +L+ LM + G+  ++ Q+ + +Y  
Sbjct: 122 FASSTLEVGDVALNLAANTVVSAGTGLELPRKEYMVLKALMEHPGRIQSREQLETKLY-Q 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + E V  N VE HI  LRKKL        + + R +GY
Sbjct: 181 WGEEVSSNAVEVHIHHLRKKLPEGF----IKTVRGIGY 214


>gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 243

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 96/233 (41%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  ++  +         S    D+  ++  L   G   L
Sbjct: 5   LLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFERASRESYDLILLDLMLP--GMNGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R      P+I ++        +    SG DD + KP    E+LARV A+ RR  
Sbjct: 63  DILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTS 122

Query: 121 VSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +           + + G + ++ +  +  + G+   L  +E  +L YL    G  + +
Sbjct: 123 GGDEGVLSEQKDGSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             + +A++G FD    +  V+ H+S LRKKL        +DS R +GY +  N
Sbjct: 183 DDLMNAVWG-FDYIGGQRTVDVHVSSLRKKLELDPDSVHIDSIRGVGYKLVVN 234


>gi|229076178|ref|ZP_04209146.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
 gi|229099149|ref|ZP_04230083.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
 gi|229105297|ref|ZP_04235946.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
 gi|229118159|ref|ZP_04247518.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
 gi|228665382|gb|EEL20865.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
 gi|228678223|gb|EEL32451.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
 gi|228684377|gb|EEL38321.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
 gi|228707041|gb|EEL59246.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
          Length = 229

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +            ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|229153018|ref|ZP_04281199.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228630438|gb|EEK87086.1| Two-component response regulator [Bacillus cereus m1550]
          Length = 229

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|330823313|ref|YP_004386616.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|329308685|gb|AEB83100.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 236

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  +E     +    L +  R    A+   L+  G   L
Sbjct: 7   ILIVEDDDSIAELLRMHLSDEGYDVE--RVADGRLGLAAVERGGWHALVLDLMLPGVDGL 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R  RA    VP+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRSE 124

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K+       G + +    R+  V G+   L  RE  +L +     GK  ++  +
Sbjct: 125 ALARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQPGKVFSRLDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + ++G +     E+ V +HI++LR K+ RN      + +    GY +
Sbjct: 185 LNQVWG-YRHDGYEHTVNTHINRLRIKIERNPADPKRILTVWGRGYKL 231


>gi|297154252|gb|ADI03964.1| two component system transcriptional regulator PhoP [Streptomyces
           bingchenggensis BCW-1]
          Length = 249

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++    +  G  G  +    +           R D+  ++  L        
Sbjct: 13  ILVVEDDPGIRLLLESALGLSGYQVSSAATGHDALLGVERFRPDLLLLDVMLPD--LDGF 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA   + P++ ++    +   +    +G DD V KP    E+L R+ AI RR  
Sbjct: 71  EVTRSLRAVGVRTPVLFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRTG 130

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                              + +     +    G+  PL   E ++L +LM N  + ++K+
Sbjct: 131 HDVPYEMGEDEAEVLRYADLELDERAHEVHRAGQYIPLSPTEFKLLAFLMENPNRVLSKS 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI   ++G +D + +  +VE+++  LR+K+ + L    + ++R +GY +
Sbjct: 191 QILDRVWG-YDFSGDGRIVETYVRYLRRKI-DHLDPPLIHTQRGVGYCL 237


>gi|290969322|ref|ZP_06560847.1| response regulator receiver domain protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780828|gb|EFD93431.1| response regulator receiver domain protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 219

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD  L++         +G  L      +           D+  ++  +   G    
Sbjct: 4   ILIADDEQLMRRLVHDFLLPEGYELMEAADGKAALAAYEQYHPDLILLDVMMP--GYDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        L  +D GVD+ V KP   + ++A++ A++RR K 
Sbjct: 62  TVCREIRRESAVPIIMLTAKGEEIDQLFAYDLGVDEYVTKPFSPKILVAKIKAVFRRSKH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    E   + +  D R   + G+   L   E ++L YLM+N GK +++ QI + ++  +
Sbjct: 122 AAE-GEACGVCLDKDARQVVLDGKNVDLSPTEYKLLNYLMSNTGKALSRRQILNQVWN-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +   V++HI++LR KL  K   + + + R  GY  +
Sbjct: 180 DYYGDLRTVDTHINRLRIKLGIKG--EYIQTVRGYGYRYN 217


>gi|239918315|ref|YP_002957873.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415488|ref|ZP_06247230.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839522|gb|ACS31319.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 239

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +   ++             DV  ++  L   G   +E
Sbjct: 19  LVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLP--GLDGIE 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S+  ++ ++        L+    G DD + KP   RE++ARV A+ RR + +
Sbjct: 77  VCRRVRAFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTT 136

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  E     G + +     +  V G+V  L R E  +L  L     +  ++ Q+   ++
Sbjct: 137 VSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVW 196

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +E +V+ HI  LR+KL        +D+ R +GY +
Sbjct: 197 DPA-WVGDERLVDVHIKNLRRKLDANPAR-YIDTVRGVGYRM 236


>gi|218509607|ref|ZP_03507485.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli Brasil 5]
          Length = 227

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G  ++     +  E        D+  +E     +    +EL
Sbjct: 7   VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILELDAARR--SGIEL 64

Query: 64  PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R +R   +    P+I ++        +    +G DD V KP    E++ARV A+ RR +
Sbjct: 65  CRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRAR 124

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++  + G I +  +      +     L   E R+LE+LM++ G+  +++Q+   ++
Sbjct: 125 PEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D  V+E  V+ H+ +LRK L      D + + R  GYS++
Sbjct: 185 G-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226


>gi|50083860|ref|YP_045370.1| OmpR family transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49529836|emb|CAG67548.1| transcriptional regulator protein (OmpR family), response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter sp. ADP1]
          Length = 228

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   +           G  +  F+  +         + ++  ++  +       L +
Sbjct: 6   LVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPR--MDGLTI 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R  S +P+I ++        +   + G DD V KP   +E++ARV A+ RRL    
Sbjct: 64  CRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLDRKA 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              +    R+    +    + +   L   E R+LE  + + G+  ++ Q+   I      
Sbjct: 124 EPEQNDLFRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQLLDHI-NPDSF 182

Query: 184 AVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222
            V + V++SHI  LR+K+          + V +   +GY  ++
Sbjct: 183 DVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRFEY 225


>gi|300790441|ref|YP_003770732.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799955|gb|ADJ50330.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +        +G + +  ++     W  +    DV  ++  L        
Sbjct: 3   LLIVEDEREFAETLRRGLVAEGFTADVAHTGREGLWRATEHAYDVVVLDIMLPE--LSGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA     P++ ++         D FD G DD ++KP     ++AR+ A+ RR  
Sbjct: 61  EVLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLIARLRALLRRGA 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     E G +R+    R      +   L  RE  +LE+L+   G  ++K +I S ++ 
Sbjct: 121 PARPAVLEAGDLRLDPSARTVHRGQKRIELTAREFGLLEFLLRRTGAALSKNEILSHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +ENVVE +I  LR+K+    G   +++ R +GY +
Sbjct: 181 AH-YDGDENVVEVYIGYLRRKIDAPFGTHTIETVRGVGYRL 220


>gi|187777705|ref|ZP_02994178.1| hypothetical protein CLOSPO_01297 [Clostridium sporogenes ATCC
           15579]
 gi|187774633|gb|EDU38435.1| hypothetical protein CLOSPO_01297 [Clostridium sporogenes ATCC
           15579]
          Length = 227

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   + D  ++    DG + +G F + + ++ L+     D+  ++  L    E   
Sbjct: 6   LIVEDEVSINDILVSALRADGYTAKGVFLAKDAQDALEIF-HPDLILLDINLPD--ENGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R I     +P+I ++    +   +   + G DD + KP + +E+L RV    RR+  
Sbjct: 63  ELCRYINNKYCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVNK 122

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              ++E   I      +V  +GR      E   L  +E  +LE+ + NR    ++  I +
Sbjct: 123 YKEKSEEEFIYINKFVKVNLEGRIVFKDDEEVKLKPQEYELLEFFIKNRNIVFSREIILN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD   E   V+ H+ +LR KL  +     +D+   +GY +
Sbjct: 183 KVWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTVFGIGYVM 226


>gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 255

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V+          G  +   +       +      D+  ++  L        
Sbjct: 16  ILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQEAPDLIVLDVMLP--KLDGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S VP+I +S    +   +   D G DD + KP   +E+ AR+A I RRL  
Sbjct: 74  GVCRELRKLSDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRRLDD 133

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S N               + + ++ R    +GE  PL   E  +LE L    G+ V + +
Sbjct: 134 SPNALSAPSSPGVLRISDVEIDTNRRQVFQRGERVPLTYTEFSLLELLFRQPGRVVPRAE 193

Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           I   ++G       +  VV+ ++++LR KL  +    + + + R  GY
Sbjct: 194 ILEELWGYPPRRNADLRVVDVYVARLRSKLEADPRNPELIITVRGTGY 241


>gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193]
 gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193]
          Length = 224

 Score =  225 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++D         G  +    + + +E L  ++RED   I   +        
Sbjct: 3   ILLVDDDPRLRDLVRIALERAGWQV--VTAADGQEALLHASREDPDFIVLDIGLPELDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  S+VP++ ++        +   + G DD V KP   RE++AR+  I +R + 
Sbjct: 61  EVCRRIRQRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKRSQK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G + +       ++ G+   L  RE+ IL  L+ +  +  ++ ++ S I+G
Sbjct: 121 AQASTSLTHGELSLDPRAHRCQINGQEIALTAREQGILALLLQDPAQIRSRAELISQIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                V +  ++SH+  LR KL    G D +++   +G  +
Sbjct: 181 AG-SQVSDRTLDSHLRNLRAKLEQAGGNDLIETVHAVGIRL 220


>gi|332160068|ref|YP_004296645.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607372|emb|CBY28870.1| transcriptional regulatory protein basR/pmrA [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664298|gb|ADZ40942.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862041|emb|CBX72207.1| transcriptional regulatory protein pmrA [Yersinia enterocolitica
           W22703]
          Length = 219

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G        G + +   +      L  S++  +  ++  L  +   VL
Sbjct: 3   LLIVEDDELLQRGIAMALTSGGYACDCAGTAAQAHSLLLSSQYSMVILDLGLPDQDGAVL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR + 
Sbjct: 63  -LRQWRRQHITLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  +   + +    +   +QG+   +  +E  IL  L+   G+ V +  +   +Y  
Sbjct: 122 QSDNLIQQDDLSLNLSTQQVCLQGQALEVTPKEFAILSRLIMRAGQTVNRELLQQDLYTW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 182 NDDLG-SNTLEVHIHNLRRKL----GKDRIRTIRGIGYRLE 217


>gi|309386157|gb|ADO67022.1| response regulator [Enterococcus faecium]
          Length = 228

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            +++DD   + +   A    +  S+  + ++     L+   +   D+  ++  L      
Sbjct: 5   ILIVDDEEKILEIIDAYLVANHYSV--YKAISGAMALEKFEKNNPDLVVLDLMLPDT--D 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L + R IR  S VP+I ++        L     G DD + KP   +E++AR+  + RR 
Sbjct: 61  GLTVCRKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRT 120

Query: 120 KVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  +N     +  G + V+ + R   +      L   E  IL  L++   K  +++ +  
Sbjct: 121 ETLSNPNKLSSSNGELIVYPESRQVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            + G+ +    +  ++SHI  LR K+ N       + +    GY  
Sbjct: 181 KVKGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 225


>gi|296502499|ref|YP_003664199.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|296323551|gb|ADH06479.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 232

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  I   + A R +     +I
Sbjct: 124 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 184 YESVWNERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|294498951|ref|YP_003562651.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348888|gb|ADE69217.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G      ++      L      D+  ++  +       +
Sbjct: 5   ILIMDDDEQIRNLIAIYLENEGFEALKVSNAVSGLALLEEQEVDLIILDIMMPQ--MNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    +G DD + KP +  E++ARV +  RR K 
Sbjct: 63  EAAFKIREEKNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKK 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N RAE      G + +    R   V+G+   L  +E  ILE L  ++G  ++  +I+ A
Sbjct: 123 YNQRAEHEIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLARHKGTVMSMGKIYEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           ++   D    ++ V  HI+K+R+K+ +       + +   +GY I
Sbjct: 183 VW-QADALKSDSTVMVHITKIREKIEDNPKKPIYIKTIWGVGYRI 226


>gi|291297174|ref|YP_003508572.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290472133|gb|ADD29552.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 224

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +        G+ G +++  +           A  D+  ++  L        
Sbjct: 4   ILLIEDDPEIAHLLQLELGEAGYTVDWASGGMSGLVRLREATPDLVILDLGLPD--LDGG 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA  +VP+I ++   +++  +     G DD + KP H  E+LAR+     R + 
Sbjct: 62  EVARRIRAGYEVPIIVLTAADAVERKVSLLSDGADDYIVKPFHPAELLARIQVQL-RHRE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +   G + V    R    +G+   L  +E  +L  L++  GK  ++ +I   ++G  
Sbjct: 121 GGEQISVGGLEVHLAKRQVLFEGQELRLSPKEFELLSLLVSRAGKVFSRQEIEEHLWGRQ 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E  + NVV+ HI+ LR KLR    +  + + R +GY++
Sbjct: 181 LE-RDSNVVDVHIANLRAKLREAGAYGYLRTVRGVGYAL 218


>gi|227551905|ref|ZP_03981954.1| response regulator [Enterococcus faecium TX1330]
 gi|257886932|ref|ZP_05666585.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257895504|ref|ZP_05675157.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257898119|ref|ZP_05677772.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|293378369|ref|ZP_06624538.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293571527|ref|ZP_06682550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|227178977|gb|EEI59949.1| response regulator [Enterococcus faecium TX1330]
 gi|257822986|gb|EEV49918.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257832069|gb|EEV58490.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257836031|gb|EEV61105.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|291608393|gb|EFF37692.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|292643233|gb|EFF61374.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 234

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +           L      D   ++  L       +
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYKVTSAADGGEGLELALEQSFDFIILDVMLPT--MDGM 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RR+ 
Sbjct: 62  EITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIE 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +        G I          V   +  L  +E  +L Y M  + + + +  
Sbjct: 122 PRKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDT 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   I+  FD A +  +V+ H+S LR+K+ R+      + + R  GY  
Sbjct: 182 LLDRIWN-FDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKF 229


>gi|254422502|ref|ZP_05036220.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189991|gb|EDX84955.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 676

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V      +  D+   ++   +      L SS   D+  ++  L       +
Sbjct: 3   ILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPE--LDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  + +RA    +P++ ++        +   ++G DD + KP    E+LARV A+ RR K
Sbjct: 61  KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S      E   +R+  + R+   +     L  +E  +LE  + N  +  ++  I   ++
Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
              D   EE  V SH+  LR+KLR      D +++   +GY +
Sbjct: 181 SYSDAPGEE-TVTSHMKGLRRKLRTVGAPADLIETVYGVGYRL 222



 Score = 58.4 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            + +DD + +          +   +   +  LEF + LQ     D+  ++  +       
Sbjct: 541 ILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQD-ENPDLLLLDISMPQF--TG 597

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL + +R   A   +P++  + +         F +G D+++ K +   ++LA +    +
Sbjct: 598 IELCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMK 657

Query: 118 RLKVSN 123
           R  +  
Sbjct: 658 RSYLQQ 663


>gi|171319327|ref|ZP_02908439.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|172065027|ref|YP_001815739.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria MC40-6]
 gi|171095472|gb|EDT40440.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|171997269|gb|ACB68186.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MC40-6]
          Length = 225

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPV--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+  + RR   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220


>gi|312135286|ref|YP_004002624.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775337|gb|ADQ04824.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 232

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +   F +    + L+      V  +   ++   +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYN--TFEADSGVQALEILKNSKVDLVILDIMMSDKDGY 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR       +P+I +S        +   + G DD + KP   +E++ RV A+ RR
Sbjct: 62  EILKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 119 LKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++      E     G + V    R  +   +   L  +E  +L+ L+ N+G+ + +  I 
Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  +
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFN 228


>gi|269960945|ref|ZP_06175315.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834385|gb|EEZ88474.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 229

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++         +  +S   D+  ++  L        
Sbjct: 3   LLIVEDEVKAGEYLQKGLVESGYVVDWVRDGVDGLYHATSEPYDLILLDIMLP--KLDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           ++   +R+     P+I ++    ++  +  F+ G +D V KP    E+LAR+  ++R   
Sbjct: 61  QVLNTLRSSDIHTPVIMLTAKEQIEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHT 120

Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             R++ S+   +   + +    R     G+   L  +E  +LE LM   G+ +++T I S
Sbjct: 121 SSRVQTSSQTLQIADLELDMMKRVATRGGQSITLTAKEYALLELLMRKEGQVLSRTTIAS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + +   + NV++  I +LR K+        + + R +GY ++
Sbjct: 181 LVWDM-NFDSDTNVIDVAIKRLRNKVDKPFETPLIHTIRGMGYKLE 225


>gi|264678857|ref|YP_003278764.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262209370|gb|ACY33468.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 238

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D       D+G+ +   +    ++ L    R    A+   L+  G   L
Sbjct: 7   ILLVEDDAHIADLLSLHLRDEGLEV--VHCARGDDGLAHLERGGWDALVLDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I IS   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++ +       + +    R+  + G    L  RE  +L +     GK  ++  +
Sbjct: 125 ALAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  N      + +    GY  
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKVELNPAQPTRILTVWGRGYKF 231


>gi|89097111|ref|ZP_01170001.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89087934|gb|EAR67045.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 227

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G   +  ++ E    L  +    +  ++  L   G    
Sbjct: 4   ILIIEDETDIAELERDYLEVSGFDSDIASNGEEGLRLAKTNEYSLILLDLMLP--GIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L R +R    +P++ ++        +  FD G DD + KP +  E++ARV A   R   
Sbjct: 62  QLCREMREFLDIPILMVTARKEDIDKIRGFDRGADDYIVKPFNPNELVARVKAHTARYDR 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +          + + +D R     GE      +E  +L +L +N  +  +K  +F 
Sbjct: 122 VISRQPEKREVRKRGLVMDADSRRVYADGEEKVFTAKEFDLLWFLASNPDRVFSKEHLFE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G +D   +   V  HI K+R+K+  +    + +++   +GY  
Sbjct: 182 RIWG-YDSLGDITTVTVHIRKIREKIEKDPSSPEYIETIWGMGYRF 226


>gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 227

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +         +   D+  ++  L       L
Sbjct: 5   ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPN--ISGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  + V P+I ++   S+   +   D G  D + KP    E+LAR+ A  R   
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V     N+  +   + +    R+ +    +  L  RE  +L +LM +  + + + QI + 
Sbjct: 123 VVKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LRKK+   +    + + R +GY +
Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKVDCNVDVPLIHTVRGVGYVL 225


>gi|300694393|ref|YP_003750366.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum PSI07]
 gi|299076430|emb|CBJ35746.2| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum PSI07]
          Length = 232

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A V D        +G  +    +    E LQ +   + + +   L+  G   L
Sbjct: 9   ILVIEDDARVSDFLSRGLRAEGYRV--LLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 66

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA  + VP++ ++    +   +     G DD + KP    E+LAR+ A+ RR +
Sbjct: 67  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 126

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N  +   + +  +       G+  PL  +E   LE LM+  G+  ++ +I S +
Sbjct: 127 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  ++ +  N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 187 WGANEDPL-TNIVDVYVRRLRSKIDEGHPVPLLKTVRGLGYRLD 229


>gi|218896838|ref|YP_002445249.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543555|gb|ACK95949.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 232

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDQDIVQFIKVNLMQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R +R    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRVREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|304440638|ref|ZP_07400522.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370825|gb|EFM24447.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 216

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
             +I+D   ++          G  +  F   +  ++ ++    D+  ++  L G  G+++
Sbjct: 3   IAIIEDEEDIRKLIEYALSTQGFEVSTFE--KGPDFFKTEILPDIILLDIMLPGMSGQEI 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R  R      +I ++   +    +   ++G DD + KP    E+++RV A  RR+ 
Sbjct: 61  LKKIRENRKFDNTLVIMLTAKSAEMDVVSCLEAGADDYIKKPFGVMELISRVKAHIRRIG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E   I + +  R  +  GE   L  +E  +L+YL  N+   + +  I   I+G 
Sbjct: 121 REAEEIEVRDIMIDTKRRTVKKDGEEINLTYKEFELLKYLAENKSIVLTRENIIEKIWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD   E   V+ HI+ LR+K+    G D + + R +GY ++
Sbjct: 180 FDYIGETRTVDMHIASLRQKI----GEDYIATIRGVGYKME 216


>gi|302865510|ref|YP_003834147.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315502058|ref|YP_004080945.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302568369|gb|ADL44571.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315408677|gb|ADU06794.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 229

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         E         R D+  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLGIVLRSEGFVPSFVADGERALAAFRDNRPDIVLLDLMLP--GMSGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           + R IR  S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR + V
Sbjct: 64  VARAIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDV 123

Query: 122 SNNRAETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +      GP    I +          GE   L   E  +L  L     +   +  +   +
Sbjct: 124 APEMLTIGPPGNQITIDVPAHTVSRDGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +  A +  +V  H+ +LR K+       + + + R +GY 
Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|78213892|ref|YP_382671.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198351|gb|ABB36116.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 259

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++           L  +   D+  ++  +        
Sbjct: 22  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVMMP--KLDGY 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 80  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRRVEK 139

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   +R+ ++ R      E   L   E  +LE L++  G+   + +I 
Sbjct: 140 EQVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFNRGEIL 199

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 200 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 245


>gi|312115081|ref|YP_004012677.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220210|gb|ADP71578.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 230

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +    +A   D G + +     E   WL  +   D   ++  L    G  +
Sbjct: 3   ILVVEDDVDLSRQLVAAMTDAGYAADAAFDGEEGAWLGETEPYDAIILDLGLPKIDGLSI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R  +A  + P++ ++        +   ++G DD V KP    E++AR+ A+ RR  
Sbjct: 63  LE--RWRKADIKTPVLILTARDRWSEKVAGINAGADDYVAKPFQMEEVIARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+    E G +R+ +       +G    L   E R+L YLM ++ + V++T++   +Y 
Sbjct: 121 GVAKAELECGDLRLDTRTARVTWKGTAVKLTGLEFRLLSYLMHHQSRVVSRTELVDHLYQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LR+K+      D + + R LGY +
Sbjct: 181 Q-DFERDSNTIEVFIGRLRRKI----PADIIHTVRGLGYCL 216


>gi|164685948|ref|ZP_01947601.2| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165924183|ref|ZP_02220015.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
 gi|164601469|gb|EAX31777.2| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165916370|gb|EDR34974.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
          Length = 223

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + DG  A     G +++     +    + SS  E    I   L       L+
Sbjct: 4   LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + IR  +   P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR K 
Sbjct: 64  VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRRSKE 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G I +         + +   + RRE  +L+ L+ N G+ +++ Q+   +YG 
Sbjct: 124 RAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTLYG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E ++ N +E HI  LRK+     G   + + R +GY ++
Sbjct: 183 WGENIDSNALEVHIHNLRKR----FGAKLIRTIRGVGYMVE 219


>gi|86146719|ref|ZP_01065040.1| putative two-component response regulator [Vibrio sp. MED222]
 gi|85835566|gb|EAQ53703.1| putative two-component response regulator [Vibrio sp. MED222]
          Length = 243

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 92/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  +E  N++E  + L    + D+  ++  L       L
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHHVERANTIEKAQGLYLDGQFDLVVLDRGLPD--GDGL 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R++R      P++ ++   +    +   ++GVDD + KP    E  ARV  + RRL 
Sbjct: 70  DFCRMLRQQEDWTPVLMLTARDAELDKVSGLEAGVDDYITKPFSVLEFQARVRNVLRRLS 129

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              +  +           G + +  +     +  +  PL   E  +L +L    G+  +K
Sbjct: 130 HVESATQEAMTTESIMNFGGLIIQPERHQVSLNNQDVPLTATEFTLLHFLATRPGRVYSK 189

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   ++         + V S +++LR KL       D + +   +GY  +
Sbjct: 190 DELLEHVWNTHHS-GYHHTVCSTVNRLRTKLAMPNSDDDFIKTVWGVGYKFE 240


>gi|104774697|ref|YP_619677.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514824|ref|YP_813730.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423778|emb|CAI98784.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116094139|gb|ABJ59292.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 228

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  +N  E    L ++    +  ++  +       
Sbjct: 3   ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPN--MSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR +
Sbjct: 61  IDVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   V+G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 KQVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+ +   G + + +   +GY ++
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGYKVE 227


>gi|163847395|ref|YP_001635439.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525241|ref|YP_002569712.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163668684|gb|ABY35050.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449120|gb|ACM53386.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 226

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD          L  + G  +  F + +    LQ   + +   I   ++       
Sbjct: 3   ILVVDDDIPSARMTSYLLEEAGYRV--FRAHDASNILQLIEQHNPDLILLDVMMPKIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR +S +P+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  EVCRQIRRNSDIPIIFLSARHQLQDRVMGLQIGGDDYLVKPFEPSELLARVEAVLRRRNA 120

Query: 122 ----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++ R   G I +           G V  L   E R+L YLM N G+ +  TQI S 
Sbjct: 121 DVLNTSTRLSQGNITLDPVEHKVLFTDGRVVELTPLEFRLLYYLMKNSGRILNVTQILSK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           ++G +D   E N+V  +I +LR K+         V + R LGY  +
Sbjct: 181 VWG-YDYEGESNLVAVYIRRLRTKVEEDPDHPRHVITVRNLGYKFE 225


>gi|330874632|gb|EGH08781.1| heavy metal response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 224

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYVVDIATTGLDGLYLAQHQAYDVVILDVNLPE--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R      ++ ++    L+  +   + G DD + KP    E+LARV  + RR + 
Sbjct: 61  EVLSRLRKTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|300693441|ref|YP_003749414.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czccba [Ralstonia
           solanacearum PSI07]
 gi|299075478|emb|CBJ34771.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum PSI07]
          Length = 224

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G   +   S     +       D+  ++  L   G    
Sbjct: 3   LLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLP--GMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++ R +R H   P++ ++    L   L   + G DD + KP    E++ARV  I RR   
Sbjct: 61  QVIRELRRHKTTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGPM 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E   + + +  R     G    L  +E  +L  L    G+ ++++ I S ++ +
Sbjct: 121 RESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 -NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLD 220


>gi|229138610|ref|ZP_04267194.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
 gi|228644889|gb|EEL01137.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
          Length = 242

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDQDIVRFMNVNLIQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E++ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|167462051|ref|ZP_02327140.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322381463|ref|ZP_08055454.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154570|gb|EFX46853.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 225

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    L      D++ ++  +  K     
Sbjct: 3   ILIADDDIHIYELIRYYLQKEGFKVLEAKDGEEASALLEQETVDLAIVDVMMPNK--DGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R IR +  +P+I ++    +      + +G DD + KP   +E++ R+ A+ RR   
Sbjct: 61  ELCREIRRYYDIPVIMLTAKGEIPDKEKGYQAGTDDYLVKPFEPKELVFRIKALLRRFGL 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS++  +     +     +   + +   LP +E  +L  L +   +   + Q+ S ++G 
Sbjct: 121 VSSDTIQLNNTVIDRKSYEIRCKDKTLILPLKEFELLSQLASCPDRIFTREQLISLVWGQ 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +   V+ HI +LR++      F  + + R LGY ++
Sbjct: 181 -DFTGDARTVDVHIKRLRERFSQTDDF-IITTVRGLGYKLE 219


>gi|219847341|ref|YP_002461774.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541600|gb|ACL23338.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 227

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G  +           L    R D+  ++  L    E   +
Sbjct: 5   LVVDDDPGIVRLVRSYLEQAGFRVASAFDGATARRLIRQERPDLVILDLMLPD--EDGFD 62

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R   A + +P+I ++        +   + G DD + KP + RE++ARV A+ RR+
Sbjct: 63  IARSLRSDPATATLPIIMLTARIDDTDRIVGLELGADDYIVKPFNPREVVARVKAVLRRV 122

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 NR E G + +  DG    + G    L   E  +L   M   G    + ++    
Sbjct: 123 SGGTVRNRLEQGSLVLDLDGHQAWLGGNELELTPTEFALLSLFMRYPGHAFTRAELLEQG 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +     E  ++SHI  LRKKL        +++   +GY +
Sbjct: 183 LG-YAATGLERTIDSHIKNLRKKLEYDPAAPVIETVYGIGYRL 224


>gi|221066592|ref|ZP_03542697.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220711615|gb|EED66983.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 238

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D       D+G+ +   +    ++ L    R    A+   L+  G   L
Sbjct: 7   ILLVEDDAHIADLLSLHLRDEGLEV--VHCARGDDGLAHLERGGWDALVLDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I IS   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++ +       + +    RD  + G    L  RE  +L +     GK  ++  +
Sbjct: 125 ALAQSARLESGSLSVNGLVMDPVARDASLNGRHLDLTPREFDLLYFFARQSGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+ RN      + +    GY  
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKVERNPAQPTRILTVWGRGYKF 231


>gi|332992917|gb|AEF02972.1| putative two component response regulator transcription regulator
           protein [Alteromonas sp. SN2]
          Length = 227

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + D       + G  +E   +         +   ++  ++  L    G ++
Sbjct: 3   ILVVEDEKKIGDYIKQGLTESGFVIELVRNGLDGHHKAMTGEFNLIILDVMLPDINGWRI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  R   + +Q P++ ++   S+   +   + G DD + KP    E+LARV  ++RR  
Sbjct: 63  LESLRQ--SGNQTPVLFLTARDSVNDRVKGLELGADDYLVKPFAFAELLARVRTLFRRGN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V+ N  +   +++    R  +  G+   L  +E  +LE ++  +G+ + ++ I S ++ 
Sbjct: 121 TVAANLLQVADLQMDIPSRVVKRAGQSINLTTKEFSLLELMVRRQGEVLPRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +   + NV++  I +LR K+ +      + + R +GY +
Sbjct: 181 I-NFDSDTNVIDVAIRRLRAKIDDAFSPKLIQTVRGMGYKL 220


>gi|292900777|ref|YP_003540146.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291200625|emb|CBJ47757.1| two-component response regulator [Erwinia amylovora ATCC 49946]
          Length = 219

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +G +++   +         S +  +  ++  L  +     
Sbjct: 3   ILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDR--DGA 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  R     +P++ +S   +L   +D  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  + G I +    +   V  +   +  +E  +L  L+   G+ V +  +   +Y 
Sbjct: 121 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+    N +E H+  LR+KL    G D + + R +GY ++
Sbjct: 181 WQDD-TSSNTLEVHMHNLRRKL----GKDRIKTVRGVGYRLE 217


>gi|288555847|ref|YP_003427782.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288547007|gb|ADC50890.1| two component transcriptional regulator, winged helix family
           protein [Bacillus pseudofirmus OF4]
          Length = 231

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 97/229 (42%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +G      +  E    L SS + D++ ++  +        
Sbjct: 4   ILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPV--MDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R  S +P+I ++     +  ++    G DD ++KP    E++AR+ A+ RR   
Sbjct: 62  DFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTYQ 121

Query: 122 SN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N                 I++    R  +V      L  +E  +L +L  ++G+   + 
Sbjct: 122 RNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++++GL D    E  V++HI  LR KL+     + + +   +GY +
Sbjct: 182 HLLTSVWGL-DYEGTERTVDTHIKTLRMKLKPYG--NVIQTVWGIGYKL 227


>gi|227485289|ref|ZP_03915605.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227236749|gb|EEI86764.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 219

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D   +++       + G  ++ F   +    ++         +   L+   +  
Sbjct: 1   MIYVVEDDGAIRNLVSYALTEKGYQVKSFE--DGRSIVKEIRENPCELLLLDLMLPEKDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + + + +R  S +P+I ++        +   +SG DD + KP    E+L+RV AI RR+ 
Sbjct: 59  VTILKELREFSDIPVIILTAKTDEFDKVLGLESGADDYITKPFSILELLSRVKAILRRVN 118

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ +      + + +  R  +V GE   L  +E  +L   M N G  + +      I+G
Sbjct: 119 KADCDHLTYKNLSINTKKRTVKVNGEKIDLTYKEFEMLFLFMNNMGNVITREDFLLKIWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E   V+ HI+ LR KL++      + + R LGY  
Sbjct: 179 -YDYQGETRTVDVHIASLRSKLKDAGS--YISTVRNLGYKF 216


>gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
 gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
          Length = 227

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +         +   D+  ++  L       L
Sbjct: 5   ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMENFENGNWDLILLDVMLPN--ISGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  + V P+I ++   S+   +   D G  D + KP    E+LAR+ A  R   
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V     N+  +   + +    R+ +    +  L  RE  +L +LM +  + + + QI + 
Sbjct: 123 VVKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LRKK+   +    + + R +GY +
Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKVDCNVDVPLIHTVRGVGYVL 225


>gi|194466634|ref|ZP_03072621.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227543945|ref|ZP_03973994.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300909695|ref|ZP_07127156.1| response regulator [Lactobacillus reuteri SD2112]
 gi|77745285|gb|ABB02543.1| response regulator [Lactobacillus reuteri]
 gi|194453670|gb|EDX42567.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227186061|gb|EEI66132.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300893560|gb|EFK86919.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 228

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +    L+    L+++  +D   I   L+      +
Sbjct: 4   ILIIEDEENLANFVELELKHEGYDTDV--ELDGRAGLEAALNQDFDVILLDLMLPELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR+  
Sbjct: 62  EVARRVRELKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K          + +  + R      EV  L +RE  +L  LM N    +++  + 
Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226


>gi|311696838|gb|ADP99711.1| two-component response regulator [marine bacterium HP15]
          Length = 233

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 96/229 (41%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +       D G+          +  L+      V  +   L+  G   L 
Sbjct: 6   LIIEDNPGIGELVRMQVSDLGMKP--VLVDRGDTGLERFREGGVDLVILDLMLPGLDGLA 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA    VP++ ++   +    +   + G DD + KP    E+ AR+ A++RR+  
Sbjct: 64  VCREIRACPGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELAARIKALFRRVDA 123

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  E   +R+    R   V      L  RE  +L +  ++RG+  ++ Q
Sbjct: 124 LSQAAPAGDQADEIEVDGLRIDPVRRRVFVDDREVDLTAREFDLLWHFASHRGRVFSRAQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  +++G ++    E+ V +HI++LR K+  +      V +   +GY  
Sbjct: 184 LLDSVWG-YNHEGYEHTVNTHINRLRNKIEADPADPRYVQTVWGVGYRF 231


>gi|300741844|ref|ZP_07071865.1| DNA-binding response regulator [Rothia dentocariosa M567]
 gi|300381029|gb|EFJ77591.1| DNA-binding response regulator [Rothia dentocariosa M567]
          Length = 231

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 94/215 (43%), Gaps = 4/215 (1%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   + +    +   +G +     +             D+  ++  L   G+  +E+  
Sbjct: 12  DDDDALAEMIGIVLAQEGYNAVFCENGSRAFETFMRHSPDLVLLDLMLP--GKSGIEVCE 69

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            IR+ S VP+I ++     +  +   ++G DD + KP  H E++AR+ A  R  +     
Sbjct: 70  QIRSSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHLELMARIRARLRPRESRQLV 129

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G   +  DGR  + +G   P+   E  +L  L+   G+ +++ ++   ++G  D  V
Sbjct: 130 VRVGDTIMDMDGRTLKYKGAEVPMTPLEFDLLAALVRRPGQAMSRQELLETVWGYSD--V 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++V  H+ +LR K  +      + + R +GY +
Sbjct: 188 SDSLVNVHVQRLRAKFTDIGAEQVIQTVRGVGYKV 222


>gi|282857214|ref|ZP_06266458.1| two component transcriptional regulator, winged helix family
           [Pyramidobacter piscolens W5455]
 gi|282585000|gb|EFB90324.1| two component transcriptional regulator, winged helix family
           [Pyramidobacter piscolens W5455]
          Length = 231

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G ++E          L  +    +  ++  L   G    
Sbjct: 4   ILIVEDDRPIAELERDYLEANGFAVEIAFDGREGLRLARTEEYALLLLDVMLP--GISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    VP++ ++        +     G DD V KP    E++AR  A  +  + 
Sbjct: 62  EICREVRKSKNVPVVMVTARKDDVDKIRGLGLGADDYVVKPFSPSELVARCRAHIQIHER 121

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +    E   +++    R   V G    L RRE  +L +L AN     ++  +
Sbjct: 122 LSSGASSGAERPIEVKGLKILPLSRRVFVGGREVALARREYELLLFLAANPDIVFSRETL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           F  I+G  D   +   V  H++++R K+       + +++    GY  
Sbjct: 182 FERIWGE-DHPGDAATVTVHVNRIRDKIEKDPSRPEYIETVWGAGYRF 228


>gi|229121460|ref|ZP_04250687.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
 gi|228661924|gb|EEL17537.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
          Length = 242

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKV--FSAYNGEEALEIINNNSIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|229191197|ref|ZP_04318186.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228592347|gb|EEK50177.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 232

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +  S   D+  ++  +        
Sbjct: 6   ILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMP--KIDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVARQIRIKHNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFSPIELVARVNAQLRRFLT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++   +  ET  + +  D R   V GE   L  +E  IL  L ++  K  +   I
Sbjct: 124 LNQPKVEEKKSVLETSGVAINLDQRKVNVYGEQIELTPKEFDILYLLASHPKKVYSVEHI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           F  ++   D     + V  HI  LRKK+      D  + +   +GY+ +
Sbjct: 184 FQQVW-TGDYYDGGSTVAVHIRTLRKKIGEDTRKDKLIKTVWGVGYTFN 231


>gi|317404641|gb|EFV85039.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 220

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++         ++      DV  ++  L       L
Sbjct: 3   ILVVEDEPTLAAQLAEALRLAGYTVDAAADGADAHYMGEVETYDVVVLDLGLPV--MDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +  RA  + +P++ ++   +    +   D+G DD + KP H  E+LARV A+ RR  
Sbjct: 61  TVLKQWRAAGRGMPVLILTARSNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRHS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ +   GP+ + +      V G+   L   E ++L  LM + G+ V++  +   IY 
Sbjct: 121 NHASAQWRCGPLMLDTRLARATVDGQPLNLTSHEFKVLAVLMQHAGEVVSRGDLIEHIYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N ++  I +LRKKL      D +++ R LGY +
Sbjct: 181 Q-DHDRDSNTIDVFIGRLRKKL----PADTIETVRGLGYRL 216


>gi|116074029|ref|ZP_01471291.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
 gi|116069334|gb|EAU75086.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
          Length = 229

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 5/216 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L DD A +          +G ++   +              D++ ++  +   G   L+
Sbjct: 9   LLADDEANIVMLLEMELEAEGFTVLTASDGVTAMKTVRDTPPDLALLDWNMP--GMTGLD 66

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     +P+I I+    +   +   ++G DD + KP + RE+LAR  A+ RR + 
Sbjct: 67  ICRRLRDTGVFLPVIMITARDEMDDRVAALEAGADDFIAKPFNVREVLARAKALLRRSQG 126

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++  + G + +    R   + G    L  RE  +LE  M +  + +++ Q+   ++G 
Sbjct: 127 FSSDVLQVGDLVLNGAERTCAINGTPLVLTVREFDLLECFMRHPRQALSRAQLIQHVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
            D   +ENVV+ ++  LRKKL        + + R +
Sbjct: 186 DDYFGDENVVDVYVRYLRKKLEATGSQRVIQTVRGV 221


>gi|323356976|ref|YP_004223372.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323273347|dbj|BAJ73492.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 226

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 91/224 (40%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   + +    +   +G       +G  +++       + R D+  ++  L   G
Sbjct: 5   ILVVDDDTALAEMIGIVLRTEGFDTVFCADGAQAVDAW----RTERPDLILLDLMLP--G 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +E+   +RA S VP+I ++        +   +SG DD + KP + +E++AR+    R
Sbjct: 59  VDGIEICTRVRAESGVPIIMLTARTDTADVVKGLESGADDYIMKPFNPKELVARIRTRLR 118

Query: 118 RLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++V  +     G + V     +         L   E  +L  L     +  ++  +   
Sbjct: 119 PVQVPVDETLRIGDLVVDVAAHEVRRGDNPIALTPLEFELLVALAEKPQQVFSREMLLEQ 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           ++G +    +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 179 VWG-YHYKADTRLVNVHVQRLRAKIEADPDNPRIVTTVRGVGYR 221


>gi|332654980|ref|ZP_08420722.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516323|gb|EGJ45931.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 230

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   +E LQ    ++   +   ++  G    
Sbjct: 4   ILIIDDDRELCALIKRSVQSEHIEADFCNT--GKEGLQKLKEQEYQLVVLDVMMPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N++       +   +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNHQAGAMQKLDFDGLQIDLENRSVTTANGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 227


>gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + +  + +    +ED   I   ++       
Sbjct: 4   ILIVDDEPDIITLISRYAEREGYEV--VTAEDGSQAIDICRKEDFDLIVMDIMMPDTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+    +P+I +S   +    L  F+ GVDD V KP   RE++AR+ A+  R K 
Sbjct: 62  TACKKIKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVINRSKT 121

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +     G + + + G    V G    L  +E  +L + + NRG  + + QI + 
Sbjct: 122 DVSENDSGIVNIGGMEIDTFGLTVTVDGTRNELTAKEYALLMFFVNNRGIVLTRDQILNE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G +D    +  V+  I  LR KL +    D + + R +GY  + 
Sbjct: 182 VWG-YDSFGVDRTVDWQIKLLRSKLGS--CRDCIKTVRGVGYKFEV 224


>gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
 gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
          Length = 228

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++ +  +          L      D+  ++  +       +
Sbjct: 5   ILIVDDDKEIRNLISVYLENEDLKTQKAEDAIEALQLLEEKEFDLIILDIMMPN--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P+I +S        +    SG DD ++KP +  E++ARV +  RR K 
Sbjct: 63  EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       +  E G + V +D     V+G+   L  +E  ILE L  N+G  ++  +I+
Sbjct: 123 YNTPIEYNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGSVLSVAKIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++        +N V  HI+K+R K+         + +   +GY I
Sbjct: 183 ETVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|300787465|ref|YP_003767756.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796979|gb|ADJ47354.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 231

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   V+D        +G ++           L  +   D   ++  +   G   L
Sbjct: 3   LVIVDDETAVQDSLSRTLRFEGYTVSVAGDGAAGLNLVRAEAPDGVLLDVTMPVLG--GL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++RA    VP++ ++    +   +   D+G DD + KP   +E+LARV A+ RR  
Sbjct: 61  EVCRVLRAEGNTVPVLMLTARTGVTDRVAGLDAGADDYLVKPFALQELLARVRALLRRTG 120

Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +    R+         L R E  +LE  + +    + +T +
Sbjct: 121 YHTPPAPAAPAALRFADVALDPATREVFRGHRPLHLTRTEFAMLETFLRHPRIVLTRTVM 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F  ++G +D     N ++ ++S LR+KL        + + R +GY +
Sbjct: 181 FENVWG-YDFGTASNGLDVYVSYLRRKLEADGEPRLLHTVRGVGYVL 226


>gi|126437092|ref|YP_001072783.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126236892|gb|ABO00293.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 251

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +   +    D  +    ++      +      DV  ++  L   G   LE
Sbjct: 21  LVVDDEAALAEVVASYLNRDHFTTRIVDNGPDAVAVARDFDPDVVILDLGLP--GMDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR + +
Sbjct: 79  VCRRLRTFSDAYVVMLTARDTEMDTIVGLTVGADDYVTKPFSPRELVARIRAMLRRPRAT 138

Query: 123 NNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             R              GP+R+    R+  + GE   L R E  +L  L A  G  +++ 
Sbjct: 139 PERESDGGGDVAAPLSFGPLRIDVAAREVSLDGEPILLTRTEFDLLAALSARPGVVLSRR 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  +R+KL  +      V + R +GY +
Sbjct: 199 QLLETVR-EGPWVGNEHLVDVHIGHVRRKLGDDPAAPRYVITVRGVGYRM 247


>gi|330876294|gb|EGH10443.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 225

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 107/222 (48%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        + G  +E   + E   +  +    D++ I+  L G G   L
Sbjct: 3   LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R +R   +  P++ ++   + Q  ++   +G DD V K     E+ AR+ A  RR  
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKTFQFEELEARLNAWLRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ +  + +   +  +   L   E RILEYLM +  + V K ++   +Y 
Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV+E  + +LR+KL + + F P+++ R +GY  +
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGYLFN 221


>gi|327183273|gb|AEA31720.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 110/237 (46%), Gaps = 23/237 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   V +     F  +G    ++++G  +++   + +++ + D+  ++  L  K 
Sbjct: 3   ILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDM--FKENADKYDLITLDLNLPKK- 59

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++
Sbjct: 60  -DGIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALH 118

Query: 117 RRL-----------KVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANR 164
           RR+           K  +   ET  +++    R+     +    L  +E  +L  +    
Sbjct: 119 RRVMMEEKPALPQEKKQDYDIETEHLKISKSRREVLFDAQPVIDLTPKEFDLLYTMAQKP 178

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 179 KQVFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 233


>gi|328544198|ref|YP_004304307.1| Two component transcriptional regulator, winged helix family
           [polymorphum gilvum SL003B-26A1]
 gi|326413941|gb|ADZ71004.1| Two component transcriptional regulator, winged helix family
           [Polymorphum gilvum SL003B-26A1]
          Length = 219

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++          DG S++    L+           D+  ++  L     + +
Sbjct: 3   ILLIEDDTVLGAAVRDQVAADGHSVDWVTRLDAAGDAMIGTAYDLILLDLMLPD--GRGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + +RA   V P++ ++    +   ++  ++G DD + KP    E+ AR+ ++ RR  
Sbjct: 61  GFLKSLRARGDVTPVMILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYS 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   T GP+ +    R     G+   L  RE  + E  ++  G+ ++KTQ+   +Y 
Sbjct: 121 GNPNPIVTHGPLEIDLAARSIRRDGKPVQLTAREWALFEAFVSRPGQLLSKTQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E H+S+LRKKL    G   ++++R LGY +
Sbjct: 180 AFDAEVESNTIEVHVSRLRKKL----GPQVIETERGLGYRL 216


>gi|291543087|emb|CBL16197.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
 gi|291549580|emb|CBL25842.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 233

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    ++  S I   ++       +
Sbjct: 5   LIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEENKDTCSLIILDVMMPDMNGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  + VP++ ++     +  +     G DD + KP    E++ARV ++ RR    
Sbjct: 65  VLQEIRKKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYTTL 124

Query: 123 NNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N  A           + +    R   +Q     L  +E  +L +L +N+G+   K QI++
Sbjct: 125 NPVAGSEAATMLLKDMVIDKVNRTVTLQNLPVELTGKEFDLLVFLASNKGRVFTKKQIYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            ++   + A +++ + S ISKLRKK+         + + R +GY  +
Sbjct: 185 QVW-AEEYAFDDSNIMSFISKLRKKIEPNPEQPFYIQTVRGVGYRFN 230


>gi|169630671|ref|YP_001704320.1| DNA-binding response regulator MtrA [Mycobacterium abscessus ATCC
           19977]
 gi|169242638|emb|CAM63666.1| DNA-binding response regulator MtrA [Mycobacterium abscessus]
          Length = 225

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G      +            R D+  ++  L   G   +
Sbjct: 5   ILVVDDDASLAEMLTIVLRGEGFETAVVSDGTQALTAVRELRPDLVLLDLMLP--GMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++R+ S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR   
Sbjct: 63  DVCRVLRSDSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRNDD 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     I +         +GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 123 EPAELLNIAGIDIDVPAHKVTREGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +    +  +V  H+ +LR K+        V  + R +GY 
Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221


>gi|149203784|ref|ZP_01880753.1| two-component response regulator [Roseovarius sp. TM1035]
 gi|149142901|gb|EDM30943.1| two-component response regulator [Roseovarius sp. TM1035]
          Length = 223

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A           ++G S++  ++        +S   DV  I+  L       L
Sbjct: 3   LLVVEDDATTGAYIARGLREEGQSVDLVSNGRDALIQATSGPYDVLIIDRMLPE--IDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A +  P++ ++   S+   +   ++G DD + KP    E+ ARVAA+ RR  
Sbjct: 61  TLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRPH 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+ +    R    +G+   L  RE  ILE+LM  +G+   +T +  AI+
Sbjct: 121 ALEQETVLRAGPLEMDLIARKVTREGQEIDLLPREFAILEHLMRRKGRVQTRTMLLEAIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 181 DIS-FDPMTNVVETHISRLRAKVDKPFTTELIKTVRGAGYRID 222


>gi|329922786|ref|ZP_08278321.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941928|gb|EGG38212.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 230

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G +L   +       +  + + D+  ++  +       +
Sbjct: 6   ILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKTHKVDLIILDVMMPQ--MDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  +  P+I +S        +     G DD V KP    E++AR+ +  RR K 
Sbjct: 64  QACMKIREENNTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYKQ 123

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            NN+        +   + +        V G    L  RE  +L  L  NRG  ++  +I+
Sbjct: 124 LNNQSVRDENEIQIDELILNVASHRVTVAGREIKLTPREFSLLHTLAINRGLVLSMDKIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + ++        +N V  HI KLR+K+  +    + + +   +GY I+
Sbjct: 184 TEVWNEP-FMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230


>gi|312875838|ref|ZP_07735828.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797319|gb|EFR13658.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 232

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +   F +      L+      V  +   ++   +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYN--TFEADSGVLALEILKHNKVDLVILDIMMSDKDGY 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR       +P+I +S        +   + G DD + KP   +E++ RV A+ RR
Sbjct: 62  EVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 119 LKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++      E     G + V    R  +   +   L  +E  +L+ L+ N+G+ + +  I 
Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  +
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFN 228


>gi|303256413|ref|ZP_07342427.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
 gi|302859904|gb|EFL82981.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
          Length = 218

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +        +G +++             +    +  ++  L   G+  L
Sbjct: 3   ILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLP--GKDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + IR   +  P++  +   ++   ++  D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G + +    R+    GE   L  +E  +L  L    G  +++ Q+   +Y 
Sbjct: 121 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  +  N +E HI  LRKKL      D + + R +GY ++
Sbjct: 181 -YESLIGSNAIEVHIHHLRKKLSE----DSIKTVRGVGYVLE 217


>gi|154505123|ref|ZP_02041861.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
 gi|153794602|gb|EDN77022.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
          Length = 236

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++++D A +    + +    G  +    S     +       D   ++  L G  GE V
Sbjct: 10  ILIVEDDADISGLLVKIMEGAGYQVRQVFSGTEALFCMERELPDCVLLDLMLPGMTGEAV 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L+  R  +   ++P++ +S   S+Q  +     G DD + KP    E++ARV A  RR  
Sbjct: 70  LDQIRQ-KQKKEMPVLILSAKVSVQDKVKLLRLGADDYITKPFDPEEVIARVEAAMRRYT 128

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +          + ++   R  EV G   PL   E  IL  L+ N  K  ++  +
Sbjct: 129 KEAQNMEAEQEVFRYKNLSLYPQSRKVEVSGIELPLTMHEYDILYLLIQNPQKVYSREHL 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +  ++       E+N V  H+S LRKK++        + +   +G+ ++
Sbjct: 189 YEQVW-KGGYYGEDNTVNVHVSNLRKKIQKADKEESYIKTVWGIGFKLE 236


>gi|238918413|ref|YP_002931927.1| DNA-binding transcriptional regulator BasR [Edwardsiella ictaluri
           93-146]
 gi|238867981|gb|ACR67692.1| transcriptional regulatory protein BasR/pmrA [Edwardsiella ictaluri
           93-146]
          Length = 220

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +  + +  +S      L  S+   +  ++  L        
Sbjct: 3   ILIVEDDTLIQQGLAQAMARENYAYDCADSAVGASALLQSSHYSLIILDLGLPD--IDGA 60

Query: 62  ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R   R     P++ ++   ++   +D  D+G DD + KP    E+LARV A+ RR++
Sbjct: 61  NALRQWRREGIDAPVLILTARDTVSDRVDGLDAGADDYLVKPFALAELLARVRALIRRMQ 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              NN  +   I +    +     G+   +  +E  IL  LM   G+ + +  +   +Y 
Sbjct: 121 GLCNNFLQVDDIHLDLSSQQVTCGGQALEITPKEFAILARLMMRAGQTINREVLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  +  N +E HI  LR+KL    G   + + R +GY ++
Sbjct: 181 WQD-GLSSNSLEVHIHNLRRKL----GKKRIKTLRGVGYRLE 217


>gi|218132898|ref|ZP_03461702.1| hypothetical protein BACPEC_00759 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991771|gb|EEC57775.1| hypothetical protein BACPEC_00759 [Bacteroides pectinophilus ATCC
           43243]
          Length = 237

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       + G  +E F+  +       +   D+  ++  L       
Sbjct: 15  LIYVVEDDQNIREIESFALKNSGYIVESFDCGKTFFNKVHNKVPDLVLLDIMLPD--IDG 72

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ + +++      +P+I ++   S    +   D G DD + KP    E+++RV AI R
Sbjct: 73  LEILKRMKSDFELCNIPVIMVTAKSSEIDKVKGLDQGADDYMTKPFGVMELISRVKAILR 132

Query: 118 RLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R + +++    + G I +  +     V  E   L  +E  +L+ L++N G  +++  I  
Sbjct: 133 RSRNTSDEKIFKAGDIIINEERHAVYVNDEPVELTFKEYNLLKLLISNYGIVMSREVIMD 192

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G      E   ++ HI  LRKKL        + + R +GY+I
Sbjct: 193 RIWGTS-FEGESRTLDMHIKTLRKKLGESGS--MIKTVRNVGYAI 234


>gi|254486503|ref|ZP_05099708.1| two-component response regulator [Roseobacter sp. GAI101]
 gi|214043372|gb|EEB84010.1| two-component response regulator [Roseobacter sp. GAI101]
          Length = 223

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A           ++G +++         +  SS   DV  I+  L       L
Sbjct: 3   LLVVEDDATTGSYIARGLREEGHTVDLVPHGREGLFQASSGSYDVLVIDRMLPEV--DGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A +  P++ ++   S+   +   ++G DD + KP    E+ ARVAA+ RR +
Sbjct: 61  TLVKTLRGAGNTTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVAALARRPQ 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V   +     G + +    R     G+   L  RE  +LE+L+  +G+   +T +  A++
Sbjct: 121 VLEQDTVLRAGDLEMHLITRKVTRGGQDIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 181 DIS-FDPMTNVVETHISRLRAKVDKPFDRELIHTVRGAGYRID 222


>gi|187776697|ref|ZP_02993170.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
           15579]
 gi|187775356|gb|EDU39158.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 88/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G ++    +        +  + D++ I+  L        
Sbjct: 4   IFLVEDDKAIGKNLILLLRSEGFTVTHAPTRSEALAALAGNKFDLALIDISLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEIKETQDLPVIFLTASSDEASVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +  E   + V       +  G    L   E R+L   + N    + ++++   ++   
Sbjct: 122 SPSAFEICGLHVDMASGIVKKDGSEVFLSALEYRLLLVFINNPKNIITRSRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+  N      + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRL 221


>gi|117618398|ref|YP_858477.1| two-component system, regulatory protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559805|gb|ABK36753.1| two-component system, regulatory protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 218

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   +  +      +L  +   D   ++  L   G   L
Sbjct: 3   ILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLP--GRDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +  R+     P++ ++    L   ++  ++G DD + KP    E++ARV A+ RR  
Sbjct: 61  SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++  E G +R+         +G    L   E R+L YLM +RGK V+++++   IY 
Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N VE  I ++RKK       D +++ R LGY I+
Sbjct: 181 Q-DFDRDSNTVEVFIGRIRKK----THSDLIETVRGLGYRIN 217


>gi|119718004|ref|YP_924969.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538665|gb|ABL83282.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 297

 Score =  225 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 14/228 (6%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +     +     G  +   +       L      DV  ++  L   G   +E+
Sbjct: 68  VVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLP--GIDGIEV 125

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121
            R +R  S   ++ ++        L     G DD + KP   RE+LAR+ AI RR +   
Sbjct: 126 CRRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKT 185

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +      G + +  + R+  ++ E+ PL R E  +L  L        ++ Q+
Sbjct: 186 GQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQL 245

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G  D   +E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 246 IDRVWGE-DWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRM 292


>gi|326387920|ref|ZP_08209526.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207966|gb|EGD58777.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 225

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +    +G +++     E   ++ S+   D   ++  L       L
Sbjct: 3   ILIVEDEPTLGRQLKSTLEQNGYAVDLSTDGEDGHFMGSTEEYDAVVLDLGLPE--IDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +  + R   +  P++ ++   S    +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TVLGMWRKEGRRFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+     G +R+ +      + GE   L  +E ++L YL+ ++GK V++T++   IY 
Sbjct: 121 GNSSAELIAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  ++++RKKL    G D + + R LGYS++
Sbjct: 181 Q-DFDRDSNTIEVFVTRIRKKL----GPDVITTIRGLGYSLN 217


>gi|298249466|ref|ZP_06973270.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547470|gb|EFH81337.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 233

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 101/228 (44%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   +      +  ++  ++    +G + LE  E    S   D   ++  L    
Sbjct: 3   ILVVEDEKKLAHLLRRVLQEESHTVNLAYDGLSGLELAE----SGTYDAVVLDVMLPE-- 56

Query: 58  EKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
               E+ R +R  + + P++ ++   S++  +   + G DD + KP    E+LARV A+ 
Sbjct: 57  LDGFEICRRMRTDNVMSPVLMLTARGSVEDRVAGLNVGADDYLPKPFAMEELLARVNALL 116

Query: 117 RRLKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR   +     +     + +     +      V  L  +E  +LEYLM + G+ + +TQI
Sbjct: 117 RRRDRTFEVATQLRADDLILDLVRHEARRGERVIELTAKEFALLEYLMRHPGQALTRTQI 176

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             A++  +D     NVV+ +I  LR K+        + + R +GY ++
Sbjct: 177 TDAVW-RYDLEALSNVVDIYIHYLRDKIDQGFTRPLIKTVRGIGYKLE 223


>gi|238797820|ref|ZP_04641313.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia mollaretii ATCC 43969]
 gi|238718348|gb|EEQ10171.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia mollaretii ATCC 43969]
          Length = 230

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   +     +L      D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSSYIHRALTEQGFTVDIAATGTDGLYLALEYDYDTIVLDVMLP--GMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + + +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  RVLKGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELIARIQALLRRRPS 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     + +    R     GE   L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGADVTQLHINDLHLDLLARRVTRGGERLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDAPYSLKLLHTVRGMGYVLE 222


>gi|312793664|ref|YP_004026587.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180804|gb|ADQ40974.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 232

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +   F +      L+      V  +   ++   +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYN--TFEADSGVLALEILKHNKVDLVILDIMMSDKDGY 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR       +P+I +S        +   + G DD + KP   +E++ RV A+ RR
Sbjct: 62  EVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 119 LKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++      E     G + V    R  +   +   L  +E  +L+ L+ N+G+ + +  I 
Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  +
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFN 228


>gi|269125708|ref|YP_003299078.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310666|gb|ACY97040.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 100/225 (44%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G  ++   + L+  E  + SA  D+  ++  L   G   
Sbjct: 6   ILVVEDEPAIAEAVAERLRAEGFTAVIARDGLDAVERFRRSA-PDLVVLDLMLP--GLDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R ++A   VP++ ++        L     G DD + KP   R ++ARV A+ RR++
Sbjct: 63  LEVCRRLQAERPVPVLMLTARGEETDQLIGLGVGADDYLTKPFSMRVLVARVRALLRRIE 122

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +        G + V    R   ++G    L   E  +L +L    G   ++ ++   
Sbjct: 123 RARSGTHPVVRLGGLEVDRAARRVRLRGAQVHLTPTEFELLAFLAGAPGTVFSRAELLER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G    A     V+SH+  LR+KL    G + + +   +GY+++
Sbjct: 183 VWGWTAGAG-TRTVDSHVRALRRKL----GDEIIRTAHGVGYALE 222


>gi|157267317|gb|ABV26372.1| PhoP [Proteus mirabilis]
          Length = 230

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L++      F D G  ++     +  +   + +  DV+ ++  L    E  +
Sbjct: 9   ILIIEDNILLRHHLSVQFRDAGHQVDAAQDAKEADHFIAESTPDVAIVDLGLPD--EDGI 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R ++  +P++ ++   S Q  +   ++G DD V KP H  EI+ARV A+ RR +
Sbjct: 67  SLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMRRNM 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    ++  + GE   L   E  ILE LM N+ K V+K  +   +Y 
Sbjct: 127 GIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQLY- 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK+  K   D + + R  GY  D
Sbjct: 186 PDAEQRESHTIDVLMGRLRKKILQKYDNDVIVTVRGQGYRFD 227


>gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 224

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G  +                  D+  ++  L   G   L
Sbjct: 4   ILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARQLNLDLIILDWMLP--GVSGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA    VP+I ++    +   +   D+G DD V KP    E+LARV A  RR K
Sbjct: 62  EICRRLRASGDKVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLRRSK 121

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++  +      + +     +      +  L  +E  +L+YL+ +  + + + +I   ++
Sbjct: 122 ETDSADILMFDDLSLNRSTGEVYRGQRLVELTAKEFDLLDYLLTHPRQVITRDRILEEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D   + NV+E +I  LR KL        + + R +GY +
Sbjct: 182 G-YDFMGDSNVIEVYIRYLRLKLEANNEKRLLQTVRGVGYVL 222


>gi|56540661|gb|AAV92784.1| PmrA [Salmonella enterica]
 gi|56540663|gb|AAV92785.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +          G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELTVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|229825423|ref|ZP_04451492.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
           49176]
 gi|229789986|gb|EEP26100.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
           49176]
          Length = 239

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +       F  +G  +  F +   +E L  +A+E++  I   ++      +
Sbjct: 11  ILVCDDEKDIVSAIKIYFEAEGYKV--FTAENGKEALSIAAKEEIHLILMDVMMPVMDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +  R +R  S +P+I ++        +     G DD V KP +  E++AR  +  RR   
Sbjct: 69  QTVRKLREDSIIPVIMLTAKSEDVDKVLGLGIGADDYVTKPFNPIELIARAKSQIRRYVR 128

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K ++       + +  + ++ +V GE   L  +E  IL+ LM  +G+  +   I
Sbjct: 129 FGGQAGKPADKVLTLDGLVLDDNAKEVQVDGEKVDLTPKEFEILKMLMLEKGRVFSPETI 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++G  +    E+ V  HI  LR+K+  N      +      GY +D
Sbjct: 189 YRKVWGE-EPYGSESTVAVHIRHLREKIEINPSEPRFIKVVWGQGYKVD 236


>gi|255283380|ref|ZP_05347935.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
           14469]
 gi|255266028|gb|EET59233.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
           14469]
          Length = 249

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D+  +          +  S++  F+  E  ++L+ +   D   ++  +       
Sbjct: 22  ILVAEDQRDMNRLISNRLAAEHYSVDSCFDGQEALDYLECT-EYDAVILDIMMPV--MDG 78

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ R +R   + VP++ ++   S++  +   D+G DD + KP    E+LAR+  + R+ 
Sbjct: 79  LQVLRKLRQRKEHVPVLLLTAMDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVMLRKP 138

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  N    G + V  D +     G+   L  +E  IL Y++ N G  +++ ++   I+
Sbjct: 139 AAVKTNICTVGDLEVHMDTQQVLRGGKEIKLSGKEFSILRYMVQNAGIVLSREKLEQHIW 198

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D     NV++ +I  LRKK+ +      + + R  GY +
Sbjct: 199 N-YDYTGSSNVIDVYIRYLRKKIDDGYEKKLIHTVRGAGYVL 239


>gi|78188413|ref|YP_378751.1| two component transcriptional regulator [Chlorobium chlorochromatii
           CaD3]
 gi|78170612|gb|ABB27708.1| two component transcriptional regulator, winged helix family
           [Chlorobium chlorochromatii CaD3]
          Length = 253

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G       S E            +  ++  L   G   
Sbjct: 22  LLLVVEDDQNLAALMEYNLNRAGYRCHIVGSAEAAMVELGRKSFALVLLDVMLP--GMDG 79

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            EL R IR       +P+I ++        +  F+ G+DD V KP   RE+  R+ AI +
Sbjct: 80  FELCRHIRNTHLYRDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSFRELNLRIRAILK 139

Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +  + +A+    TG + V        + G+   L   E ++L  L+  +G+  ++  +
Sbjct: 140 RERRQSGKAQEVLGTGGLEVDLVRHCVTLDGQELVLTLMEFKLLVALLKRKGEAQSRETL 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S ++ + D+++    +++HI+++R+KL N      + + R LGY ++
Sbjct: 200 LSDVWDI-DKSISTRTIDTHITRIREKLGNYGA--LIKTVRGLGYRLE 244


>gi|45441575|ref|NP_993114.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51596756|ref|YP_070947.1| DNA-binding transcriptional regulator PhoP [Yersinia
           pseudotuberculosis IP 32953]
 gi|145599096|ref|YP_001163172.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis
           Pestoides F]
 gi|153948628|ref|YP_001400585.1| PhoP family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162418657|ref|YP_001607237.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis Angola]
 gi|186895824|ref|YP_001872936.1| DNA-binding transcriptional regulator PhoP [Yersinia
           pseudotuberculosis PB1/+]
 gi|229894482|ref|ZP_04509664.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Pestoides A]
 gi|14133539|gb|AAK54056.1|AF333124_1 regulator protein PhoP [Yersinia pseudotuberculosis]
 gi|14133543|gb|AAK54058.1|AF333125_1 regulator protein PhoP [Yersinia pseudotuberculosis]
 gi|45436436|gb|AAS61991.1| response regulator protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590038|emb|CAH21672.1| response regulator protein [Yersinia pseudotuberculosis IP 32953]
 gi|145210792|gb|ABP40199.1| response regulator protein [Yersinia pestis Pestoides F]
 gi|152960123|gb|ABS47584.1| transcriptional regulatory protein PhoP [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351472|gb|ABX85420.1| transcriptional regulatory protein PhoP [Yersinia pestis Angola]
 gi|186698850|gb|ACC89479.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229703501|gb|EEO90518.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Pestoides A]
          Length = 223

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLP--GEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H   +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRGQGYRFDVN 223


>gi|254425657|ref|ZP_05039374.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188080|gb|EDX83045.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 640

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A + D            ++     E  E   +    D   ++  L     + +
Sbjct: 29  ILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPD--IEGI 86

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R      P++ ++   + +  +   ++G DD V KP    E+ AR+ A+ RR  
Sbjct: 87  SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + G +RV  +  +   Q     +  +E  +LE  + +  +  +   I   ++ 
Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLW- 205

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            F++   E+ V +H+  LR+KL+      D + +   LGY +
Sbjct: 206 SFEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRL 247



 Score = 73.8 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           IDD   V      +    G       + +       S R D+  I+  +       LE+ 
Sbjct: 517 IDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPET--NGLEIC 574

Query: 65  RIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           R++RA     Q+P++ +S +    T    F+ G DD ++K     E+  R+    +R   
Sbjct: 575 RVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKRTGR 634

Query: 122 S 122
           +
Sbjct: 635 A 635


>gi|170722192|ref|YP_001749880.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760195|gb|ACA73511.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 220

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +L+                 D+  ++  L   G   +
Sbjct: 3   LLLVEDDTALGEGICDGLRQEGYTLDWLRDGLSGLHALQHEMFDLVILDLGLPRLG--GI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +RA    +P++ ++   + +  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELLRRLRAGGDSLPVLILTARDATEDRITGLDAGADDYLVKPFDLNELKARLRALLRRSA 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   + +    +     G    L  +E R+L  L+A  GK   + ++   +YG
Sbjct: 121 GRAKVLIEHAGVSLDPATQQVHYNGVPVVLTPKEYRLLHELLAQPGKVFTRERLTQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +DE  E N +E +I  LRKKL N L    + + R +GY ++
Sbjct: 181 -WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217


>gi|88855871|ref|ZP_01130533.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814738|gb|EAR24598.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 242

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         DDG ++    +        +      +AI+  L        
Sbjct: 21  ILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPE--MTGF 78

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +R     +P++ ++   +++  +   DSG DD + KP    E  AR+ A+ RR  
Sbjct: 79  EICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDT 138

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + + +        G   P+  +E  +L  L  + G+ + ++ I S ++G
Sbjct: 139 AAGKATLKIGELALDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEVWG 198

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                ++ NVV+ ++S LR+KL        + + R +GY++
Sbjct: 199 TTAH-IDANVVDQYVSYLRRKLEPTQSGVTISTVRGVGYAL 238


>gi|256822513|ref|YP_003146476.1| two component heavy metal response transcriptional regulator,
           winged helix family [Kangiella koreensis DSM 16069]
 gi|256796052|gb|ACV26708.1| two component heavy metal response transcriptional regulator,
           winged helix family [Kangiella koreensis DSM 16069]
          Length = 230

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D      G+ G  +    +      L  +   D+  ++  L        
Sbjct: 3   LLLVEDEPKTGDYLRQGLGEAGFVVVLVRNGLDGHHLAMTESFDLIILDVMLPDV--DGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +R    + P++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  QIVKALRQIGCRTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S+N+ +   + +       E  G    L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 SPPSSNQLKISDLTLDLIKHRVERSGYKINLSHKEFCLLELLVRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY +D
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDNFETKLIHTVRGMGYMLD 222


>gi|224282738|ref|ZP_03646060.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
 gi|310287197|ref|YP_003938455.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313139897|ref|ZP_07802090.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|309251133|gb|ADO52881.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313132407|gb|EFR50024.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 245

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G    L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVGDLEINEDSHDVSRAGHAIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+   +  D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIMVTDDNGEQHKVTPLIETKRGIGYMI 238


>gi|206971770|ref|ZP_03232719.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218897743|ref|YP_002446154.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|229179004|ref|ZP_04306361.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|206733155|gb|EDZ50328.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218541190|gb|ACK93584.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|228604372|gb|EEK61836.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|326940485|gb|AEA16381.1| two-component response regulator VanRB [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 221

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++    + +  E +    ++    I   ++       
Sbjct: 6   ILVVEDDQEIQELIKQFLMTQHYTV--VVASDGLEGMTQFNKQSFDLILLDVMMPNLNGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 64  EVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G
Sbjct: 124 KNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E  ++++HI  LRKKL        + + + +GY ID
Sbjct: 184 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKID 220


>gi|324328720|gb|ADY23980.1| Two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 229

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL YLM N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 235

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 102/232 (43%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   V         + G  +    +L+ +  LQ +   +   I   ++  G   +
Sbjct: 3   LLLIEDEPSVVSFIRRYLAEAGYDVSV--ALDGQSGLQMATENNFQLIILDVMLPGMNGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + +R      P++ ++   S +  +   DSG DD + KP    E+LAR+ ++ RR  
Sbjct: 61  AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120

Query: 119 ----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                      + + N  +   + +  + +     G+   L   E R+LEY+M N  + +
Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +I   ++G+ D  +   VV+ +++ LRKK+  K     + +   +GY +
Sbjct: 181 SRMEILENVWGV-DFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYML 231


>gi|225174252|ref|ZP_03728251.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170037|gb|EEG78832.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 230

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A    +G ++E  +       L S     +  ++  L        
Sbjct: 4   ILVVEDEEKISRVIRAYLEKEGFAVEEASDGLQALELVSDFNFSLIILDLMLPH--MSGE 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R   + +P+I ++   + +  +     G DD + KP    E++ARV A+ RR +
Sbjct: 62  DVCKQLRRQGNNIPIIMLTAKGAEEERIRGLGLGADDYIVKPFSPGELVARVHAVLRRYR 121

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +N           G + + +  R   ++G++  L   E ++L  +  + G+   + ++ 
Sbjct: 122 SNNGVLAEVMEFADGDLVIDTLRRQATLRGQLVDLTATEFKLLAAMAKSPGRVFTRGELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
               G       +  ++SHI  LR+KL  K      + +   +GY  
Sbjct: 182 EIAQGAL-PTGFDRTIDSHIKNLRQKLEPKPDEPQLIRTVYGVGYKF 227


>gi|207738979|ref|YP_002257372.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum IPO1609]
 gi|300697058|ref|YP_003747719.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum CFBP2957]
 gi|206592350|emb|CAQ59256.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum IPO1609]
 gi|299073782|emb|CBJ53303.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum CFBP2957]
          Length = 224

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G   +   S     +       D+  ++  L   G    
Sbjct: 3   LLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLP--GMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++ R +R     P++ ++    L   L   + G DD + KP    E++ARV  I RR   
Sbjct: 61  QVIRELRRRKATPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILRRGPM 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +   + + +  R     G+   L  +E  +L  L    G+ ++++ I S ++ +
Sbjct: 121 RESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 -NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLD 220


>gi|47565593|ref|ZP_00236634.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47557583|gb|EAL15910.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 232

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+   +  +      ++      +
Sbjct: 6   ILIVDDDQDIVRFMNVNLIQEGFKV--FSAHNGEEALEIINKNCIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231


>gi|325276399|ref|ZP_08142172.1| DNA-binding response regulator [Pseudomonas sp. TJI-51]
 gi|324098466|gb|EGB96539.1| DNA-binding response regulator [Pseudomonas sp. TJI-51]
          Length = 220

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +L+     +           D++ ++  L       +
Sbjct: 3   LLLVEDDTALGEGICDGLRQEGYTLDWLRDGQNGVHALLHETFDLAILDLGLPR--LDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A + +P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLRRVRGAGNSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSA 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   + +    +    QG    L  +E R+L  L+A  GK   + ++   +YG
Sbjct: 121 GRAKVLIEHAGVMLDPATQQVHYQGLEVILTPKEYRLLHELLAQPGKVFTRERLTQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +DE  E N +E HI  LRKKL N L    + + R +GY ++
Sbjct: 181 -WDEEPESNTLEVHIYHLRKKLNNGL----IRTVRGIGYLVE 217


>gi|229172679|ref|ZP_04300237.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228610811|gb|EEK68075.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 218

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 98/219 (44%), Gaps = 4/219 (1%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   +++        +G   + + +++  + L+      V  +   ++       ++  
Sbjct: 2   DDDPHIRELVSVFLEREGF--QTYEAIDGLDALKKIDEVKVDMVILDIMMPNMDGFDVCF 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NN 124
            +R +  +P++ ++        +  F  G DD + KP    E++ RV A+ +R +++ + 
Sbjct: 60  ELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQ 119

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
             + G + +     +     +   LP +E  +L  L +  G+  ++ Q+   ++G +D  
Sbjct: 120 SIQVGNVLLNRKTFEVTAGEQTATLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFE 178

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  ++ HI++LR+K + +     + + R LGY ++ +
Sbjct: 179 GNERTLDVHINRLREKFQVEKSKFSIKTIRGLGYRLEVS 217


>gi|167768425|ref|ZP_02440478.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
 gi|317499213|ref|ZP_07957488.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709949|gb|EDS20528.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
 gi|291560400|emb|CBL39200.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893527|gb|EFV15734.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 95/229 (41%), Gaps = 17/229 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           ++++D   + +        D + L  F      + ++ L+ + + D   I   ++  G  
Sbjct: 5   LIVEDELSIAE-----LEKDYLELSSFEVEIETDGQQGLEKALKNDFDMIILDIMLPGVD 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E+ + IR   ++P++ +S        +     G DD + KP    E++ARV A   R 
Sbjct: 60  GFEICKQIREAKEIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLNRY 119

Query: 120 KV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         N+  E   +++    R   + GE      +E  +L +L  +  +   K +
Sbjct: 120 QRLVNNQMEVNDIIEIRGLKIDKTARRVYLNGEEKVFTTKEFDLLTFLAGHPNRVFTKEE 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +F+ I+ + +   +   V  HI K+R+K+  N      +++   +GY  
Sbjct: 180 LFNKIWDM-ESLGDIATVTVHIKKIREKIEVNTAKPQYIETIWGVGYRF 227


>gi|126702211|gb|ABO26809.1| CpxR [Legionella feeleii]
          Length = 226

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  +     +G  +   +  E       +   D   ++  L        
Sbjct: 5   ILIVDDDTELTDLLVQYLEPEGFHVVCVHDGESAVKKALNQAFDAIILDVMLP--KLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR H Q P++ ++        +   + G DD + KP + RE++AR+ AI RR + 
Sbjct: 63  EVLKAIREHLQTPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   I V    R      E   L   E  ILE L+ + G+  +K ++     
Sbjct: 123 IPTQRPIIEHQGILVDCSKRLATHNNEPMDLTNAEFNILEMLIKSPGQAFSKEELTEYAL 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           G    A +   ++ HIS LR KL +    +P V + R  GY  +
Sbjct: 183 GRKYTAYD-RSIDVHISNLRNKLGDNQAGEPLVKTVRGFGYMFN 225


>gi|30263158|ref|NP_845535.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47528519|ref|YP_019868.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186004|ref|YP_029256.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165869195|ref|ZP_02213855.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632295|ref|ZP_02390622.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637425|ref|ZP_02395705.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705083|ref|ZP_02895548.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650226|ref|ZP_02933227.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564881|ref|ZP_03017802.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227813979|ref|YP_002813988.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229603313|ref|YP_002867425.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254723170|ref|ZP_05184958.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738231|ref|ZP_05195934.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742601|ref|ZP_05200286.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254752546|ref|ZP_05204582.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761062|ref|ZP_05213086.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30257792|gb|AAP27021.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47503667|gb|AAT32343.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179931|gb|AAT55307.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164715921|gb|EDR21438.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514932|gb|EDR90298.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532593|gb|EDR95229.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129938|gb|EDS98800.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172084178|gb|EDT69237.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564198|gb|EDV18162.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227002806|gb|ACP12549.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229267721|gb|ACQ49358.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 224

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GINGLQ 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +    ++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 220


>gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 247

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D        +G  +                R D   ++  L       LE
Sbjct: 23  LVVDDEATLSDLLGMALRYEGWDVRTEADGASAVRAAREFRPDAVVLDVMLPD--LDGLE 80

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R +RA    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 81  VLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRSGM 140

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + +  D  +         L   E  +L +LM N  + ++K QI   +
Sbjct: 141 TAAQQGSELAVGDLTLDEDSHEVRRGDVEVDLTATEFELLRFLMRNPRRVLSKAQILDRV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ N      + + R  GY +
Sbjct: 201 W-HYDFGGQSNVVELYISYLRKKIDN-GRAPMIHTVRGAGYVL 241


>gi|219855601|ref|YP_002472723.1| hypothetical protein CKR_2258 [Clostridium kluyveri NBRC 12016]
 gi|219569325|dbj|BAH07309.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 237

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +++    +  +DG S+  F ++   + LQ    E +      ++       E
Sbjct: 17  LVIDDDGYIRELICTVLKNDGFSV--FEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 74

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
             + +R +   +P++ ++    L   +  F+ G DD + KP    E+L R+ A+ RR K 
Sbjct: 75  FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRRYKV 134

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V++     G + +           E + +P +E  +L  L +  GK +++ ++   ++GL
Sbjct: 135 VASQTINIGNLAMDKSRYTVISNNENYDIPMKEFELLFMLGSYHGKTLSRNRLIEEVWGL 194

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D    E  ++ HI++LR++  + +    + + R LGY ++
Sbjct: 195 -DFEGNERTLDVHINRLRERFPSHVYKFKITTIRGLGYRLE 234


>gi|212218644|ref|YP_002305431.1| transcriptional regulatory protein [Coxiella burnetii CbuK_Q154]
 gi|212012906|gb|ACJ20286.1| transcriptional regulatory protein [Coxiella burnetii CbuK_Q154]
          Length = 232

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + DG  A     G +++     +    + SS  E    I   L       L+
Sbjct: 13  LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 72

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + IR  +   P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR K 
Sbjct: 73  VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRRSKE 132

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G I +         + +   + RRE  +L+ L+ N G+ +++ Q+   +YG 
Sbjct: 133 RAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTLYG- 191

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E ++ N +E HI  LRK+     G   + + R +GY ++
Sbjct: 192 WGENIDSNALEVHIHNLRKR----FGAKLIRTIRGVGYMVE 228


>gi|160939367|ref|ZP_02086717.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437577|gb|EDP15339.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|291540515|emb|CBL13626.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   +E LQ    ++   +   ++  G    
Sbjct: 4   ILIIDDDRELCALIKRSVQSEHIEADFCNT--GKEGLQKLKEQEYQLVVLDVMMPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N++       +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 227


>gi|116334617|ref|YP_796144.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099964|gb|ABJ65113.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 229

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   +  +N  E    L ++    +  ++  +       
Sbjct: 3   ILVVDDDKEIAQLLEIYIKNEGYEPITAYNGKEALTKLHTTPDIALMILDIMMPE--MSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQ+P++ +S        +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  IEVVKEVRKDSQIPILILSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 120

Query: 121 -----VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 S +  + G + +  D  +   + G    L   E  IL  L ++  +  +  +IF
Sbjct: 121 DQVTDDSPDILDIGTLTINKDSHEVKTIAGLTISLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY I+
Sbjct: 181 ERVW-RQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227


>gi|271961841|ref|YP_003336037.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505016|gb|ACZ83294.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V++            +E  ++   E+ L+  AR     +   L+  G    E
Sbjct: 5   LLIEDDPSVRNALTLALKGRDHEVE--SAASGEDGLERLARFAADVVVLDLMLPGIDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S   ++ +S        +   ++G DD V KP+  + + AR+ A+ RR    
Sbjct: 63  VCRRIRAASSTSIVMLSARGDDFDVVGGLEAGADDYVVKPVRPQVLEARIRAVLRRTDGV 122

Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +  ET G + V          G    LP  E R+L YL A  G+  ++ Q+  +++   
Sbjct: 123 PSPVETYGALCVDRASLTVSRGGRQIALPPIELRLLLYLSAAPGQVFSRQQLLESVW-EH 181

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           D   +  +V++ + +LR K+ +       V + R  GY  
Sbjct: 182 DYLGDSRLVDACVQRLRAKIEDVPAEPKYVQTVRGFGYRF 221


>gi|81427892|ref|YP_394891.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104605|gb|AAD10265.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609533|emb|CAI54579.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 228

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 101/229 (44%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   ++ F   E    + ++   D+  ++  +       
Sbjct: 3   ILIVDDDKEIVELLSIYVKNEGYEPIQAFTGKEALTKIATNPGIDLMILDIMMPN--MSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQVP++ +S   +    +    +G DD V+KP +  E++ARV ++ RR +
Sbjct: 61  IEVIKAVRKDSQVPILVVSAKTTDMDKIQGLITGADDYVSKPFNPLEVMARVKSLLRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G+   L   E  IL  L ++  +  +   IF
Sbjct: 121 QQVTNEVPDILEVGPLVIKRDSHEVTTIAGKQIQLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             ++   +  V    V  H+S LR K+     G   +++   +GY ++ 
Sbjct: 181 ERVWKQ-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVEV 228


>gi|332535342|ref|ZP_08411138.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035215|gb|EGI71723.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 241

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 86/234 (36%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +            + ++   S E      +     +  ++  L       L
Sbjct: 6   ILVVEDDREIGKLITTQLTSLNLHVDHVVSAELALKKIAKHPYGLILLDINLPQ--MDGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119
            L R I+ H     +I ++   S    +   + G DD + KP   RE+ ARV    R R 
Sbjct: 64  SLCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRA 123

Query: 120 KV------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           ++            S      G + +        +  +   L   E  +L Y   +    
Sbjct: 124 QLLAGQNNDNSPADSEQTLNVGSLNIEFSSHQVYLGKQALNLTATEFDLLVYFARHPNHV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ Q+   ++G +  +  E+ V SHI++LR KL        +++   +GY ++
Sbjct: 184 FSRQQLLDKVWG-YQHSGYEHTVNSHINRLRAKLEEHQQAPIIETVWGVGYKLN 236


>gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 234

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +        G +G      N+             D+  ++  L       L
Sbjct: 4   ILIVEDEQQIARVLQLELGFEGYETTIANTGTDGLLKFHEDEYDLVLLDVMLPE--LNGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR H++ VP++ ++   +++  +   D G +D + KP    E+LAR+    R   
Sbjct: 62  EVLKRIRKHNETVPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALRFSH 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S++      + +    R+         L  RE  +L + M +     ++ Q+ 
Sbjct: 122 KSAPEPTSSSVHTFQDLSLNEQTREVTRNALQIDLTPREFDLLLHFMKHAKLVQSREQLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +A++G +D   + NVV+ ++  LR+KL   L   P + + R +GY +
Sbjct: 182 NAVWG-YDYYGDTNVVDVYVRYLRQKLEVNLNLPPLLHTVRGVGYVL 227


>gi|238761757|ref|ZP_04622731.1| Transcriptional regulatory protein basR/pmrA [Yersinia kristensenii
           ATCC 33638]
 gi|238699871|gb|EEP92614.1| Transcriptional regulatory protein basR/pmrA [Yersinia kristensenii
           ATCC 33638]
          Length = 219

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G        G   +   +      L  +++  +  ++  L  +   VL
Sbjct: 3   LLIVEDDELLQRGIAMALTSAGYPCDCAGTAAEAHSLLITSQYSMVILDLGLPDQDGTVL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R H  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR + 
Sbjct: 63  -LRQWRREHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  +   + +    +   +QG+   +  +E  IL  L+   G+ V +  +   +Y  
Sbjct: 122 QSDNLVQQDDLSLNLSTQQVCLQGQPLEVTPKEFAILSRLIMRAGQTVNRELLQQDLYTW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D+    N +E HI  LR+KL    G D + + R +GY ++ 
Sbjct: 182 NDDLG-SNTLEVHIHNLRRKL----GKDRIRTVRGIGYRLEV 218


>gi|145298120|ref|YP_001140961.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850892|gb|ABO89213.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 229

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 9/219 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ DG +      G +++     +    L     E+ +A+   L       +
Sbjct: 3   ILLVEDDVMLGDGMVDALRSSGYTVDWLQ--QGLPALSVLKSEEFAALILDLNLPDIDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R   QV P++ ++   +L   +   D+G DD + KP   +E+ AR+ A+ RR K
Sbjct: 61  SLLRKLRREGQVLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G I +  + +    +GE   L   E ++L+ L+   G+ ++K Q+  ++YG
Sbjct: 121 GQAQAVLEYGDILIHPESQQVTYRGEPVKLTPHEYKLLQELVTQSGRVLSKDQLQQSLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +DE  E N VE HI  LRKK       D + + R +GY
Sbjct: 181 -WDEGAESNAVEVHIHHLRKK----FYSDLIRNIRGVGY 214


>gi|308084100|gb|ADO13166.1| QseB [Edwardsiella tarda]
          Length = 219

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G +L+ F   +       SA  D   ++  L   G   LE
Sbjct: 4   LLIEDDRLIGDGIKAGLNKMGFTLDWFTDGQLGMTALESAPYDAVILDLSLP--GIDGLE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R  R      P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  ILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +        + G   PL  +E  +LE L+ N G+ + ++ I   +Y  
Sbjct: 122 QAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D+ V  N VE HI  LR+KL +      + +   +GY++
Sbjct: 181 WDDDVSSNAVEVHIHHLRRKLGSHF----IRTVHGVGYTL 216


>gi|148379031|ref|YP_001253572.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932373|ref|YP_001383413.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935682|ref|YP_001386960.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288515|emb|CAL82594.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928417|gb|ABS33917.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931596|gb|ABS37095.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 233

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    +   +      E    L       +  ++  L        
Sbjct: 7   ILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLMLP--KISGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   IR  S V +I ++     +  L+    G DD + KP   RE++ARV A+ RR   
Sbjct: 65  EVCSKIREFSNVLIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G + V          G+V  L   E ++L  L+ N G+   + Q+  
Sbjct: 125 GKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +G +D    +  V+++I  +R+K+ +     + + +   +GY  
Sbjct: 185 QAFG-YDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|170724335|ref|YP_001752023.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169762338|gb|ACA75654.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 225

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D             + G +++   +         S   D+  ++  +   G    
Sbjct: 3   LLVAEDEPKTGVYLQQGLTEAGFTVDRVMTGTDALQQAQSEAYDLLILDVMMP--GLDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R IRA    VP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EVLRKIRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   + V    R     G+   L  +E  +LE LM  RG+ + K+ I S ++
Sbjct: 121 GGSAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFALLELLMRRRGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKIDDDFAPKLIHTARGMGYMMDV 223


>gi|160898512|ref|YP_001564094.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364096|gb|ABX35709.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
 gi|222834138|gb|EEE72615.1| predicted protein [Populus trichocarpa]
          Length = 238

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A + D       D+G+ +   +    ++ L+   R    A+   ++  G   LE
Sbjct: 8   LLVEDDAHIADLLTLHLRDEGLEV--MHCARGDDGLRQLERGGWDALVLDIMLPGVDGLE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R  RA ++  P+I IS   S    +   + G DD + KP    E++ARV A+ RR++ 
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVQRILGLEIGADDYLAKPFSVLELVARVKALLRRVEA 125

Query: 121 -VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              N R E+G + +         RD  + G    L  RE  +L +     GK  ++  + 
Sbjct: 126 LAQNARLESGSLTIAGLAMDPVARDARLHGARLDLTPREFDLLYFFARQPGKVFSRMDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +A++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 186 NAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKF 231


>gi|52143545|ref|YP_083284.1| response regulator [Bacillus cereus E33L]
 gi|51977014|gb|AAU18564.1| response regulator [Bacillus cereus E33L]
          Length = 232

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVILYGETINLTKTEYEILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|30249380|ref|NP_841450.1| response regulator PhoP [Nitrosomonas europaea ATCC 19718]
 gi|30180699|emb|CAD85320.1| possible phoP; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 229

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++         G  ++  +S +   +L +  R D + I+  L   G+  L
Sbjct: 3   ILVIEDEFRLQNQIRRQLEAAGYMVDTSSSGDEGLFLATEYRPDAAIIDIGLP--GKSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R   S +P++ ++   S Q  +   + G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EIIKALRERGSLLPILILTARSSWQDKVQGLEMGADDYLTKPFQMEELQARVRALLRRAV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + GPI V    +   V G    L   E R+LE L+ +RG+ ++K  +  A+Y 
Sbjct: 121 GIPQTLLKCGPIAVDVTAQSVSVDGANIELTSFEYRLLEELVCHRGEILSKESLADALY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS--IDWN 223
             +E  + NV+E  I +LR+KL  +    P+++ R  GY   ++ N
Sbjct: 180 PHNEDRDSNVLEVMIGRLRRKLDPEGTLKPIETMRGRGYRFTLECN 225


>gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 239

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   +S +  E L+   + +  A+   L+  G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEV--VHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|325282380|ref|YP_004254921.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324314189|gb|ADY25304.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 229

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 111/224 (49%), Gaps = 12/224 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           V+I+D A V++         G+++  + +  E E+ L  +   D   ++  L   GE  L
Sbjct: 5   VVIEDEATVREVLRFHLERAGLTVSAYAAVAEAEDALAGA---DALVLDWMLP--GESGL 59

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +R+HS++   P++ ++   +    ++  ++G DD + KP    E++ARV A+ RR
Sbjct: 60  GLLRRLRSHSELRRLPVLMLTARAAEAERVEGLETGADDYLTKPFGAAELVARVRALLRR 119

Query: 119 LKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +     +   GP+ +     D  + G+   L RRE  +L +L  N G+  ++T++   +
Sbjct: 120 TQPEQPQQLSNGPLHIDLAAADARLNGQRLSLTRREFDLLTFLTQNAGRVYSRTELLDRV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +G  D    E  V+ H+++LR  L +  G    +++ R  GY +
Sbjct: 180 WGA-DFLGGERTVDQHVTQLRSHLGDAPGAPTFLETVRGRGYRM 222


>gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 1317

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+         +   ++E  N  +    L  +   D+  ++  L       +
Sbjct: 3   ILVVEDDELIAYTLTNFLTEQNYAVELANDGKTAWDLVETYEYDLILLDIVLP--KLDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + IR+  + VP++ ++   S        D+G DD V KP    E++ARV A+ RR  
Sbjct: 61  SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V S    E   +R+     +   Q +   L  +E  +LE LM N  +  +   I   ++ 
Sbjct: 121 VNSQPVLEWRGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D   E+  V +HI  LR KL+      D V++   +GY +
Sbjct: 181 YEDTPGED-AVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRL 221



 Score = 78.8 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD     +    L    G+ +   N     ++ ++  +     +   +       +
Sbjct: 376 ILVVDDDLKTLELLQVLLTPWGLEIITLN--HPGKFWETWEKIQPDMLILDIEMPTMSGI 433

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL ++IR+H Q   VP++ ++ + +++     F  G DD V+KPI   E+  R+     R
Sbjct: 434 ELCKMIRSHDQGREVPILFLTVHSNVEIVNQVFSVGADDFVSKPIIISELFNRILNRLER 493

Query: 119 LK 120
           ++
Sbjct: 494 VR 495



 Score = 43.7 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 1    MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
            + ++ DD  + +     L    G  +    S +           DV  ++  + G  G +
Sbjct: 1063 LVLVCDDDPITRQELENLLLQGGYRVLTVASGDQAIAQAVIQHPDVILLDLVMPGMNGWE 1122

Query: 60   VLELPRIIRAHSQVPLIG 77
             +   +       +P++ 
Sbjct: 1123 TMAGLKKCSDTRDIPIVI 1140



 Score = 42.2 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 2    FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++I+D   + D    LFG     +E F +    E +  S + +   +   LI       
Sbjct: 1194 ILIIEDDHDLADLLATLFGR--HEIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGF 1251

Query: 62   ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSG 94
             +   ++ H Q   VP++  S      +       G
Sbjct: 1252 TVVDWLKQHDQLFSVPVVVYSAKDLDDSERHRLKLG 1287


>gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 226

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +   N+      L  S + D+  ++  L       +
Sbjct: 5   ILLIEDDPKLLLFVEQELSLEGYQVTVANNGLDGLSLARSIQPDLLILDWMLPT--LSGV 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R+   Q P+I ++    +   +   +SG DD V KP    E+LARV A  RR+ 
Sbjct: 63  DICLRLRSTGVQTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQLRRVN 122

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +R +   + +     +     +   L  +E  +LE+L+ +  + V + QI   ++G
Sbjct: 123 PEEPDRLQFADVSLHRLTHEVYRGSQRLELTAKEFDLLEFLLRHARQVVTRDQILEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E N++E +I  LR KL        + + R +GY I
Sbjct: 183 -YDFMGESNIIEVYIRALRLKLEASNPQRILQTVRGVGYVI 222


>gi|150388920|ref|YP_001318969.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948782|gb|ABR47310.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +       ++ +    +      D   ++  L   G    E
Sbjct: 9   LIVEDEKNIADVIKAYLEKEKYEAIVTHNGKEAIDIFQQQSFDFVILDLMLP--GLSGEE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  S VP++ ++        +   D G DD + KP   +E++ARV AI RR    
Sbjct: 67  ICNRIRLQSDVPILMLTAKVEETDQIHGLDIGADDYMTKPFSPKELMARVRAIMRRTSNE 126

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             RA       G ++V   G +   +GE+  L   E ++L   + N GK  ++ ++   +
Sbjct: 127 GVRAHLIELNGGDLKVDIRGMETRKKGELMDLTATEFKLLSIFIQNSGKVFSREELVLKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D    +  ++ HI  +R K+     +  + +   +GY  
Sbjct: 187 LG-YDYVGYDRTIDVHIKNVRHKIE-CEQYKYIVTVYGVGYRF 227


>gi|312868775|ref|ZP_07728967.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
 gi|311095761|gb|EFQ54013.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
          Length = 228

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +    L+    L ++  +D   I   L+      +
Sbjct: 4   ILIIEDEENLANFVNLELKHEGYETDV--ELDGRAGLDAALSQDFDVILLDLMLPELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR+  
Sbjct: 62  EVARRVRELKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K          + +  + R      EV  L +RE  +L  LM N    +++ ++ 
Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D  VE NVV+ +I  LR K+        + + R  GY I
Sbjct: 182 SKVWG-YDSKVETNVVDVYIRYLRNKIDRSGEKSYIQTVRGTGYVI 226


>gi|297623818|ref|YP_003705252.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297164998|gb|ADI14709.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 225

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGE 58
           + ++I+D   +          +  S E   + +    L        D+  ++  L     
Sbjct: 6   LVLIIEDEKEIAKFIDLELQAE--SYETVVTYDGVTGLSKFRELNPDLVVLDLMLPV--L 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             LE+ R +R  S  P+I ++   S+   +   DSG DD + KP    E+LARV A  RR
Sbjct: 62  DGLEVARRVRKTSNTPIIILTAKDSVDDKVLGLDSGADDYLVKPFSIEELLARVRAHLRR 121

Query: 119 LKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +         + +  DGR+    G    L  +E  +LE    + GK   + +I   +
Sbjct: 122 VNPAVTGEVRVADLVMNLDGREVFRDGRRIELSAKEFELLELFARSPGKVFNRFEIEEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +     NVV+ ++  LR+KL +      + + R +GY +
Sbjct: 182 W--PEYTGGSNVVDVYVGYLRRKLEHDGERRLIHTVRGVGYVL 222


>gi|241765175|ref|ZP_04763161.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241365180|gb|EER60041.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 221

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  L+  G  A  G +G  ++        E   ++     + ++  L  +    +
Sbjct: 3   ILLAEDDELLGSGIRAGLGQNGFQVDWVRDGVAAERELATGAYQAAVLDLGLPRQ--DGM 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R +RA     P++ ++   ++   +   D+G DD + KPI   E+ AR+ A+ RR  
Sbjct: 61  DVLRQMRARRNTTPVLVLTARDAVPARIAGLDAGADDYLIKPIDLHELAARLRALVRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S  R   G + +        V G+   L  RE  +L  L+ N G+ +++ Q+   +Y 
Sbjct: 121 GQSETRLAAGNVVLDPAAHQVLVDGQPVDLSNREYDLLHALLLNAGRVLSREQLEQRLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   +  N VE HI  LR+KL    G   +++ R +GY I
Sbjct: 180 EWGSEINSNAVEVHIYHLRRKL----GTPLIETVRGVGYRI 216


>gi|238909978|ref|ZP_04653815.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 219

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLVEDDTLIGDGIKTGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R  R    Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 181 -WDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 216


>gi|254514188|ref|ZP_05126249.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR5-3]
 gi|219676431|gb|EED32796.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR5-3]
          Length = 236

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D                ++++    +    R D+  ++  L   G   +E
Sbjct: 7   LVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQRPDIVLLDWMLP--GGSGIE 64

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++      ++P+I ++   +    +   + G DD + KP   RE++AR+ A+ RR 
Sbjct: 65  LLRRLKRDETTREIPVIMLTAKTAEDNVIQGLEVGADDYMTKPFAPRELIARIKALLRRS 124

Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            V  S +R +   + +    R   +  +   +   E  +L++ M++  +  ++ Q+   +
Sbjct: 125 GVGESTDRMQVSELVLDGKSRRVFLAEQPLDMGPTEFNLLQFFMSHPERAYSRNQMLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
           +G  +  VEE  V+ HI +LRK L    K     + + R  GY  
Sbjct: 185 WGA-NVYVEERTVDVHIRRLRKALQIEGKDYSGVIQTVRGTGYRF 228


>gi|261408579|ref|YP_003244820.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285042|gb|ACX67013.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 235

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 14/228 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEKV 60
           ++I+D   +           G S   F +    + LQ     + D   ++  L       
Sbjct: 8   LIIEDERDISRIVNDYLRVQGFSS--FITENARDGLQEVRNRQPDFIILDLTLPDA--DG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ R +R  +  P++ +S   S    +     G DD + KP    E++ARV A  RR+ 
Sbjct: 64  IEVCRELRTLTSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMV 123

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +      G + +    R          L  +E  +L +L +N  +   KTQ+ 
Sbjct: 124 DPKLQATTQLLLRFGTLSIDKGARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
             ++G +   VE+N +  ++ +LR+KL         + +   +GY  D
Sbjct: 184 DQVWG-YSAYVEDNTITVYVRRLREKLERSGIKSAYITTVWGVGYKFD 230


>gi|19703920|ref|NP_603482.1| two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296327490|ref|ZP_06870036.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19714090|gb|AAL94781.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296155316|gb|EFG96087.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 224

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 103/224 (45%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  S++  +  + EE L+  +  D   I   ++       
Sbjct: 3   ILVVEDEKDLNNIISKHLKKNNFSVD--SVFDGEEALEYLSYGDYDVIILDVMMPKMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +RA+     ++ ++    +   +   D G DD + KP   RE++AR+ A+ RR  
Sbjct: 61  EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  +   + V +  +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++ 
Sbjct: 121 GNISNELQIDDLIVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +    E N+++  I  +RKK+        + +KR LGY +  +
Sbjct: 181 -YAYEGESNIIDVLIKNIRKKIDLGDSKPLIHTKRGLGYVLKED 223


>gi|323357907|ref|YP_004224303.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323274278|dbj|BAJ74423.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 244

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 104/223 (46%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D       ++G   +   +   +E L          +   ++  G   +E
Sbjct: 23  LVVDDEANLSDLLRMALQNEGW--DARTAANGQEALNVIREFGPDLLVLDIMMPGLDGME 80

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           L   IRA  +  P++ ++   +++  +    +G DD V KP +  E++ R+  + RR   
Sbjct: 81  LLTRIRAAGNDAPVLFLTAKDAVEDRIAGISAGADDYVTKPFNLEEVVVRLRGMARRHVA 140

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++ R   G + +  +  + E  G    L  +E  +L YLM N  + ++K QI   +
Sbjct: 141 AIADADPRLRVGDLSLDEESYEVERGGIPIKLTAKEFELLRYLMQNPRRVLSKAQILDQV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     +VVE +IS LRKK+ + LG   + + R +GY+I
Sbjct: 201 W-SYDFGGNGSVVEIYISYLRKKI-DSLGEPLIHTVRGVGYTI 241


>gi|148379025|ref|YP_001253566.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153933944|ref|YP_001383407.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937242|ref|YP_001386955.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|170757255|ref|YP_001780669.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|170760535|ref|YP_001786430.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226948311|ref|YP_002803402.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148288509|emb|CAL82588.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929988|gb|ABS35488.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933156|gb|ABS38655.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|169122467|gb|ACA46303.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169407524|gb|ACA55935.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226841225|gb|ACO83891.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 228

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +  + + +  E ++     D+  I   L+       
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKV--YCTTKGLESIEIFKSIDIQLIILDLMLPDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL  
Sbjct: 62  EVCRIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N+ +    + G + +  D R  +V G+   +   E  IL  L++N+GK +++ Q+ + I
Sbjct: 122 YNSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|326328836|ref|ZP_08195171.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
           Broad-1]
 gi|325953367|gb|EGD45372.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V++   +       S +   + + E+ L++ +      +   L+  G   LE
Sbjct: 5   LVVDDDLTVREVLASYLRAG--SHDVVEAGDGEQALRAMSERPADIVVLDLMLPGIDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   +VP+I ++   S    +   + G DD V KP   RE++ RV ++ +R   S
Sbjct: 63  VCRRLRQAGEVPIIMLTALGSEADRIMGLELGADDYVGKPFSPRELVLRVDSVLKRTGHS 122

Query: 123 NN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G I V +D R     G    L  RE  +L YL+A+ GK   +  +   ++G 
Sbjct: 123 GEGGVVSDGSIVVDADRRVATNGGAELALTTREFDLLRYLIAHPGKAFTREDLLEHVWGW 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
                + + V  H+ +LR+K+  +    + + +   +GY  +
Sbjct: 183 T--IGDRSTVTVHVRRLREKIESDPTRPERLVTVWGVGYRWE 222


>gi|301067694|ref|YP_003789717.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|300440101|gb|ADK19867.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 233

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 100/226 (44%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D     F  + +S+           L  +    ++ I    +       
Sbjct: 5   LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  SQVP+I ++    +   +     G DD + KP    E++ARV    R  + 
Sbjct: 65  SVLRKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 124

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + + A   +   + V +D +  +    + PL +RE  +L  L+A++ +  ++  +  A++
Sbjct: 125 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           G  D   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 185 GT-DFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|298489232|ref|ZP_07007250.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156251|gb|EFH97353.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 224

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPE--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R      ++ ++    L+  +   + G DD + KP    E+LARV  + RR + 
Sbjct: 61  EVLSRLRKTVSTRVMMLTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|254524291|ref|ZP_05136346.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas sp. SKA14]
 gi|219721882|gb|EED40407.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas sp. SKA14]
          Length = 229

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +          G+ G +++  +       L      DV  ++  L   G    
Sbjct: 3   LLIVEDESKTAHYLRTGLGEQGWAVDLASDGVTGLHLAREFDYDVIVLDVMLP--GMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + R +R   Q P+I ++    +   +     G DD + KP    E+LAR+ A+ RR  +
Sbjct: 61  NVLRELRRSKQTPVIMLTARDRVDDRVHGLGQGADDYLVKPFSFIELLARLQALVRRGRQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + G ++V    R     G    L  +E  +L  L   RG+ ++KT I + ++ +
Sbjct: 121 QEPTELQVGDLQVNLLARRAYRDGARLDLTGKEFALLALLAQRRGQILSKTVIAAQVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     NVVE  I +LR KL        + + R +GY ++ 
Sbjct: 181 -NFDSNTNVVEVAIKRLRSKLDGPYPSKLLHTVRGMGYVLEV 221


>gi|307544165|ref|YP_003896644.1| response regulator OmpR [Halomonas elongata DSM 2581]
 gi|307216189|emb|CBV41459.1| K02483 two-component system, OmpR family, response regulator
           [Halomonas elongata DSM 2581]
          Length = 220

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+ DG       +G +++   +    + + +   +D SA+   L       +E
Sbjct: 4   LLVEDDPLLGDGIRTALQREGYAVDWLETGR--DGIAAIRHDDFSAVILDLGLPDIDGME 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR    +P++ ++   ++++ +   D G DD V KP   +E+LAR+  I RR +  
Sbjct: 62  VLDKIRHAGSLPVLILTARDAVESRISGLDGGADDYVLKPFDLQELLARLRVIMRRAEGR 121

Query: 123 NNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++R  E G + +         QG    L RRE  +L  L  + G+ + +  +   +YG  
Sbjct: 122 SSRLLEVGELCIDEARHRVSWQGNDISLTRREYALLLELARHPGRVMTRPHLEDLLYGWE 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE V  N VE H+  LRKKL   L    + + R +GY +D
Sbjct: 182 DE-VASNAVEVHVHHLRKKLDRHL----IATVRGVGYRLD 216


>gi|253688253|ref|YP_003017443.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754831|gb|ACT12907.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 229

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++  +  +  ++       D++ ++  L    E  +
Sbjct: 3   ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGLPD--EDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R  R H  ++P++ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIRRWRTHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    R+  + G    L   E  I+E L+ N+GK V+K  +   +Y 
Sbjct: 121 GLASQVISLPPFEIDLSRRELVIHGSPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK++     D + + R  GY  D
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQAEAPDVITTVRGQGYRFD 221


>gi|127511031|ref|YP_001092228.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126636326|gb|ABO21969.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 225

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   +  +  F + G ++E  +       L +S + D+  ++  L       L
Sbjct: 3   ILLVEDDATTTEYVVKGFAEQGHNIETASDGHQGLLLATSMQYDLVILDRMLPQ--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +L   +RA     P++ +S    +   +    +G DD + KP    E+L R   + +R  
Sbjct: 61  KLLAALRATGNQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    + G + +    R   + G    L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SAPAQTELKVGELVMELLTRKVTLAGSEILLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221


>gi|295108122|emb|CBL22075.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 230

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   +E LQ    ++   +   ++  G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAEHIEADFCNT--GKEGLQKLKEQEYQLVVLDVMMPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSVSKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N +       +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNQQAGTMQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 227


>gi|294788094|ref|ZP_06753338.1| phosphate regulon transcriptional regulatory protein PhoB
           [Simonsiella muelleri ATCC 29453]
 gi|294484387|gb|EFG32070.1| phosphate regulon transcriptional regulatory protein PhoB
           [Simonsiella muelleri ATCC 29453]
          Length = 232

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +           G  +    S+E  + L +    D+  ++  L       +
Sbjct: 5   ILIVEDEAAIATLIRFNLEQAGFQVSVSGSVEESKILINKQLPDLILLDWMLPQT--SGV 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +    +RA S+    P+I ++            + G DD + KP   RE++ARV A+ RR
Sbjct: 63  QFVGQLRADSRTRELPIILLTARSEDVDKETGLNQGADDYITKPFSPRELVARVNALLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + + N      + +       +V  +       E ++L + M +  +   + Q+   
Sbjct: 123 RAPQKTENIIRLSSLTLDPSQFSVQVADKKIEFSPSEFKLLHFFMTHPNRIYTRRQLLDL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  ++ HI +LR+ L +      V + R  GY  
Sbjct: 183 VWGDH-IFVEERTIDVHIRRLRRGLESVNLAHWVQTIRGSGYQF 225


>gi|229193098|ref|ZP_04320053.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228590362|gb|EEK48226.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 229

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYIITVVRTGYKFEGN 228


>gi|187779465|ref|ZP_02995938.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
           15579]
 gi|187773090|gb|EDU36892.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
           15579]
          Length = 229

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G  +    +    E ++   + D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFEDQGYRV--ITASNGREAIEYCDK-DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QVCQKIRNKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + ++   G + +    R    + E      +E  I+E L  +  +  +K QI+  +
Sbjct: 122 VPLNNKSKISFGKLNLDLSSRKVYYEEEEIIFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + N V  HI K+R K ++     + + +   +GY  + N
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRSASLNHIATVWGVGYRWEKN 227


>gi|116624116|ref|YP_826272.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227278|gb|ABJ85987.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 224

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D     +        DG     + +G ++LE    L  +   D+  ++  L    
Sbjct: 4   ILVVEDDQRTAESIKLYLEHDGFEARLAADGLSALE----LCRTTAPDLVILDRMLPLV- 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+ R +RA   +P+I ++   +    L+    G DD V KP   RE++ARV A+  
Sbjct: 59  -DGAEICRRLRAAGNIPIIMLTARTTEADKLEGLRLGADDYVTKPFSPRELVARVHAVL- 116

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R            I +  +       GE   L   E ++LE L    G+  +++++   I
Sbjct: 117 RRAAPAPAPRFAAIAIDFERGTLHRHGEPIALTTTEFKLLETLCRAPGRIFSRSELLERI 176

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
           +G +D    E  V+ HI+ LR+K+ +       + +    GY 
Sbjct: 177 FG-WDYEGTERTVDVHIANLRRKIDDNPAQPALIATIFGAGYK 218


>gi|229163815|ref|ZP_04291758.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228619635|gb|EEK76518.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 229

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       N+      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENENDTLAIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|217976623|ref|YP_002360770.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217501999|gb|ACK49408.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 236

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    ++     G +++     E   +L  +   D   ++  L   G+  +
Sbjct: 3   LLVVEDDKDLNRQIVSALERAGYAVDRAFDGEEGWFLGDTEPYDGVVLDLGLP--GKDGV 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +    R   +V P++ ++        +  FD+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  TVLSDWRKAGRVMPVLILTARDRWGEKVKGFDAGADDYVTKPFHIEELLARLRALMRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+     G    V+G+   L   E R+L YLM ++GK V++ +I   +Y 
Sbjct: 121 GHASSVFSCGPVSFDERGGKVSVEGQPVKLTSHEYRLLGYLMHHQGKIVSRAEIVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL    G D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----GVDVIHTMRGLGYIL 216


>gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1]
          Length = 232

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V++      GD G  +          W       D   ++  L   G   L+
Sbjct: 8   LVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGLWWAVEHAPDAVVLDLMLP--GMDGLQ 65

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA   Q+P++ ++     +  +     G DD V KP   RE++ R+ ++ RR   
Sbjct: 66  VCRELRARRPQLPIVVLTALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRRSAP 125

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V   G+   + G    L  RE  +L +L+A+ G+   +T++ + ++
Sbjct: 126 EAATVGPVVDGGLVVDRSGQRAHLDGVPLALTGREFDLLAFLVAHPGRAFTRTELLAEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G   E  +++ V  H+ +LR+KL  +      + +    GY  D
Sbjct: 186 GW--EYGDQSTVTVHVRRLREKLEIDPNRPRRIATIWGTGYRYD 227


>gi|157692516|ref|YP_001486978.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157681274|gb|ABV62418.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 235

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   + +    +   +G+  +   ++           + D+  ++  L     +  
Sbjct: 9   LIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFHQEQPDLVILDIMLPD--GEGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR  S VP+I +S        +     G DD + KP   +E+  RV A  RR   
Sbjct: 67  DICKQIRDVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSSY 126

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     + GP  +     +    G    L  +E  ++ Y + +  + ++K  ++  
Sbjct: 127 LQPSQEEPVIKKGPFELNEQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQT 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G  D    +N V  HI +LR+K+ +     + + + + LGY  
Sbjct: 187 VWGE-DFFGSDNTVMVHIRRLREKIEHSPSTPEFLVTVKGLGYKF 230


>gi|17232219|ref|NP_488767.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133864|dbj|BAB76426.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 238

 Score =  225 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          +G S            +      D+  ++  +   G   L
Sbjct: 3   ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMFHERPPDLIILDLMIP--GLDGL 60

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   IR         ++ ++        +    +G DD + KP   RE++ARV A+ RR
Sbjct: 61  EVCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRR 120

Query: 119 L---KVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAK 170
                  N    T    V  D R         Q E   L   E  +L   ++N G+   +
Sbjct: 121 SLRQGGQNQVNRTQHFIVDLDQRTASRQIDSHQPEALDLTTLEFNLLSTFVSNPGRVWNR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           TQ+   ++G  +   +E VV++H+++LRKK+  +      + +   +GY  +
Sbjct: 181 TQLIDKLWG-DNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFE 231


>gi|311104327|ref|YP_003977180.1| transcriptional activator protein IrlR 2 [Achromobacter
           xylosoxidans A8]
 gi|310759016|gb|ADP14465.1| transcriptional activator protein IrlR 2 [Achromobacter
           xylosoxidans A8]
          Length = 230

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      L      D+  ++  L        
Sbjct: 3   LLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDV--DGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A  QVP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  +R +   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY++D
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGYTLD 222


>gi|325660728|ref|ZP_08149356.1| hypothetical protein HMPREF0490_00088 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472802|gb|EGC76012.1| hypothetical protein HMPREF0490_00088 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 226

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 102/225 (45%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D + +++  +      G+   GF          +    ++  ++  L   GE  
Sbjct: 1   MIYCVEDDSNIRELVVYTLESTGMKACGFPDGTAFMKALAFETPELVLLDIMLP--GEDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + L + ++       +P+I ++   +    +   DSG DD V KP    E+++RV A+ R
Sbjct: 59  ISLLKKLKSSAKTKDIPVIMVTAKGAEYDKVIGLDSGADDYVTKPFGMMELISRVKAVLR 118

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K    + + E   + +     +  V G    L  +E  +LE L+ N+   +++ ++  
Sbjct: 119 RTKREEKSTQYEIRNLMLDQKKHEVRVDGIPVTLTLKEFELLELLIRNKNIVLSRDRLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D   E   ++ HI  LR+KL++    D +++ R +GY +
Sbjct: 179 EVWG-YDFDGETRTIDVHIRTLRQKLKSAG--DLIETVRGVGYRM 220


>gi|294619272|ref|ZP_06698744.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|291594492|gb|EFF25897.1| regulatory protein VanR [Enterococcus faecium E1679]
          Length = 233

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D       +DG  ++ F   +           D++ ++  L        
Sbjct: 5   ILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR +   P+I ++        +     G DD + KP +  E++ARV    RR + 
Sbjct: 63  KIVQKIRENHFFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARVKTQLRRFQK 122

Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N              +   + +        + GE   L   E  IL YL   +G+ V  
Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLAERKGEVVPA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            Q+F A++G        N V +HI +LR+KL+        + +   +GY ++
Sbjct: 183 EQLFEAVWGEK-FLDNNNTVMAHIGRLREKLKEPTRKPKFIKTVWGVGYKVE 233


>gi|209364040|ref|YP_001424665.2| transcriptional regulatory protein [Coxiella burnetii Dugway
           5J108-111]
 gi|207081973|gb|ABS77180.2| transcriptional regulatory protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 232

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + DG  A     G +++     +    + SS  E    I   L       L+
Sbjct: 13  LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 72

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + IR  +   P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR K 
Sbjct: 73  VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRRSKE 132

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G I +        ++ +   + RRE  +L+ L+ N G+ +++ Q+   +YG 
Sbjct: 133 RAKPIISHGDITLDPASHVVTLKKKEVMVSRREFALLQKLLENAGRVISREQLNQTLYG- 191

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E ++ N +E HI  LRK+     G   + + R +GY ++
Sbjct: 192 WGENIDSNALEVHIHNLRKR----FGAKLIRTIRGVGYMVE 228


>gi|108803040|ref|YP_642977.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764283|gb|ABG03165.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 227

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G S    ++ + E  L+ +  EDV  +   ++  G    E
Sbjct: 4   LIVEDEPGIVRMLERGLSAQGYSC--LSAEDGETGLRMALEEDVDVVLLDIMLPGLDGRE 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           + R +R     +P++ ++    ++T +   D+G DD + KP    E+LAR+ A+ RR  +
Sbjct: 62  VLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRADQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G +++    R     G    L  RE  +LEYLM +  + +++ QI SA++  
Sbjct: 122 PESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +      NVV+ ++  LR+KL        + + R  GY  D
Sbjct: 181 YAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFD 221


>gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A  G +G +++  ++     W           ++  L   G    
Sbjct: 4   ILVVEDERRLAEALRAGLGAEGYAVDVAHNGRDALWYAGEHPYAAIVLDIMLP--GLNGY 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ ++        ++  D+G DD + KP  +  +L+R+ A+ RR  
Sbjct: 62  RVCRRLRDQGDSTPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIRRGG 121

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + G + +    R     G    L  +E  +L YLM   G+ V K ++   ++ 
Sbjct: 122 ATRPGVLKLGDLELDQASRTCRRGGADITLTGKEFALLAYLMQRPGQVVTKAELLDNLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            F  +   N+VE H+S LR+K+    G + + + R  GY
Sbjct: 182 -FAASATANLVEVHVSALRRKIDVPFGAETIRTVRGAGY 219


>gi|296156999|ref|ZP_06839836.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892885|gb|EFG72666.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 226

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVMLP--GQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R     P++ ++    +   +   + G DD + KP    E++ARV +I RR K 
Sbjct: 61  TLLQNLRRTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGKP 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +   + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RESMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+S I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKVDDAYEPKLIHTVRGMGYVLEV 221


>gi|283787078|ref|YP_003366943.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282950532|emb|CBG90197.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 224

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLESGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKISGLDVGADDYLVKPFALEELHARIRALLRRHH 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R     GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELTVGDLTLNMGRRQVWKAGEELVLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|257439442|ref|ZP_05615197.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198101|gb|EEU96385.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 247

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   +E LQ    ++   +   ++  G    
Sbjct: 21  ILIIDDDKELCTLIKRSVQAENIEADFCNT--GKEGLQKLREQEYQLVVLDVMMPGMDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 79  ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 138

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N +           +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 139 FNQQAGAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 198

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 199 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 244


>gi|83589979|ref|YP_429988.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83572893|gb|ABC19445.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 226

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +          +G  +E   +      L ++   D+  ++  L   G   L
Sbjct: 5   ILVVDDDAKITSMLKRALTYEGYDVEIAANGHQALAL-AANNPDLIILDIMLP--GIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRRL 119
            + R IR++S +P++ ++        +   D+G DD + KP    E     R     R  
Sbjct: 62  AVCRQIRSNSDIPILMLTARDDTADRVLGLDTGADDYLVKPFALEELLARIRALLRRRSR 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      +   + + +  R+       F L  +E  +L Y + N  + + + ++ + I+G
Sbjct: 122 ETEAEVLQFSDLTLNTSTREGFRGQRSFSLTAKEYELLLYFLQNPHRVLTRDELMTRIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D + E NV+E +I  LR KL        + + R +GY +
Sbjct: 182 -YDFSGESNVLEVYIGYLRAKLEAGGEPRLIQTVRGVGYVL 221


>gi|65320484|ref|ZP_00393443.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 226

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 6   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GINGLQ 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +    ++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 64  VLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 124 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 222


>gi|261207330|ref|ZP_05922017.1| response regulator VanRG [Enterococcus faecium TC 6]
 gi|289566529|ref|ZP_06446952.1| regulatory protein vanR [Enterococcus faecium D344SRF]
 gi|294616551|ref|ZP_06696329.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|260078390|gb|EEW66094.1| response regulator VanRG [Enterococcus faecium TC 6]
 gi|289161683|gb|EFD09560.1| regulatory protein vanR [Enterococcus faecium D344SRF]
 gi|291291671|gb|ADD91669.1| DdcR [Enterococcus faecium]
 gi|291590598|gb|EFF22329.1| regulatory protein VanR [Enterococcus faecium E1636]
          Length = 233

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D       +DG  ++ F   +           D++ ++  L        
Sbjct: 5   ILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR +   P+I ++        +     G DD + KP +  E++AR+    RR + 
Sbjct: 63  KIVQKIRENHFFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFQK 122

Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N              +   + +        + GE   L   E  IL YL   +G+ V  
Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLAERKGEVVPA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            Q+F A++G        N V +HI +LR+KL+        + +   +GY ++
Sbjct: 183 EQLFEAVWGEK-FLDNNNTVMAHIGRLREKLKEPTRKPKFIKTVWGVGYKVE 233


>gi|238063010|ref|ZP_04607719.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237884821|gb|EEP73649.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 229

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         E         R D+  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLMLP--GMSGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR +  
Sbjct: 64  VARAIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDV 123

Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                T       I +          GE   L   E  +L  L     +   +  +   +
Sbjct: 124 APELLTVGPPGNQISIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +  A +  +V  H+ +LR K+       + + + R +GY 
Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|300697799|ref|YP_003748460.1| transcriptional regulator [Ralstonia solanacearum CFBP2957]
 gi|299074523|emb|CBJ54074.1| Transcriptional regulatory protein, probable baeR protein, response
           regulator for mdtABCD and acrD [Ralstonia solanacearum
           CFBP2957]
          Length = 222

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +               E  +              ++  ++  L   G+  
Sbjct: 4   MILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLP--GKDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S +P++ ++        L   + G DD + KP   RE++AR+  I RR++
Sbjct: 62  LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRRVQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E+  +++ +      ++G+   L   E R+L  L    G+ +++  +   IY  
Sbjct: 122 RGGAQPES-LLQIDNAAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 181 H-RIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 221


>gi|229124382|ref|ZP_04253570.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228659034|gb|EEL14686.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 229

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    E          I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEEDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|225018069|ref|ZP_03707261.1| hypothetical protein CLOSTMETH_02005 [Clostridium methylpentosum
           DSM 5476]
 gi|224949066|gb|EEG30275.1| hypothetical protein CLOSTMETH_02005 [Clostridium methylpentosum
           DSM 5476]
          Length = 229

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    +    G  + G  S        +    D+  ++  L   G    
Sbjct: 6   ILVVEDDPDINDLLCTILRRQGFQVTGAFSGSEGRMCIAQYNYDLILLDLMLP--GITGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IRA   +P+I +S   +    +     G DD + KP    E+ ARV A  RR K 
Sbjct: 64  ELIGEIRATKTMPVIVVSAKTAQADKISLLRLGADDFIVKPFDVDEVAARVEAQLRRYKQ 123

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S N      + +  D  +  V G+   L  RE  ILE L+    K   +  +F  
Sbjct: 124 FSSGSSGNLLRYKNLVLDRDAVEVSVNGQSVSLTAREFAILELLLRYPKKVFTRANLFEQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++   +   ++N V  H+S LR KL +     + + +   +G+ +
Sbjct: 184 VW-EEEFLGDDNTVNVHMSNLRSKLAKADPETEYIKTVWGIGFKM 227


>gi|154505423|ref|ZP_02042161.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149]
 gi|153794266|gb|EDN76686.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149]
          Length = 232

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G        G  +  F + +  E L+   +ED+      ++      +
Sbjct: 6   ILVVEDDKEIREGVKIYLQSQGYEV--FLAADGIEGLEVMEKEDIHLAIVDIMMPRMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD V KP    E++ARV +  RR + 
Sbjct: 64  RMTMKLREKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRRYRR 123

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E        G + +  D  +  + G+   L   E +IL  L  N G+  +  +I+
Sbjct: 124 FMEKLEVRENVHVIGGLEINEDTVEVSIDGKPVKLTPIEYKILLLLAKNPGRVFSAEEIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++   ++A+  + +  H+  +R+K+  +      +     +GY I+
Sbjct: 184 ERVWQ--EKAINTDTIMVHVRNIREKIELDPKNPKYLKVVWGVGYKIE 229


>gi|91213879|ref|YP_543865.1| putative response regulator [Escherichia coli UTI89]
 gi|91075453|gb|ABE10334.1| putative response regulator [Escherichia coli UTI89]
          Length = 240

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 8   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNV--NGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 66  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 125

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +        + +    R+  +  +   L  RE  +L +   + G+  ++  +
Sbjct: 126 AMGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 186 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 232


>gi|113478264|ref|YP_724325.1| two component transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110169312|gb|ABG53852.1| two component transcriptional regulator, winged helix family
           [Trichodesmium erythraeum IMS101]
          Length = 257

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L      D+  ++  L        
Sbjct: 4   ILVIDDDPAIAELVAVNLEMAGYEVSQAEDGIKGQALALQLLPDLIVLDLMLPKV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     + +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDERTADIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +     +   L   E  +L  L+   G+ V+ ++
Sbjct: 122 TDRIPQAAKHSEILSYGPLTLVPERFEAIWFDQTVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR K+  +      + +    GY ++
Sbjct: 182 ILKEVWG-YDPDDDIETIRVHIRHLRTKMEPDPRHPRYIKTVYGAGYCLE 230


>gi|315645479|ref|ZP_07898603.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315278957|gb|EFU42267.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 230

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G  L   +       +  + + D+  ++  +       +
Sbjct: 6   ILMVDDETEIIKLMEIYVRNEGYKLLTASHGLEALEILKTQKVDLIILDVMMPQ--MDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E    IR  +  P+I +S        +     G DD V KP    E++AR+ +  RR K 
Sbjct: 64  EACMKIREENNTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELIARIKSQLRRYKH 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + N  +   + V        V GE   L  RE  +L  L  NRG  ++  +I+
Sbjct: 124 LNSRSVRNENEIQIDELIVNVASHRVTVAGEEIKLTPREFALLHMLAINRGLVLSMDKIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + ++        +N V  HI KLR+K+  +    + + +   +GY I+
Sbjct: 184 TEVWNEP-FMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230


>gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 230

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +   +E     + E  L+ + +ED + I   ++   E   
Sbjct: 4   ILIVEDDRAIAELERDYLEANDYEVEICE--DGESGLKRALQEDFALILLDVMLPKEDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----R 117
           ++ R +RA   VP+I +S        +     G +D + KP +  E++ARV +      R
Sbjct: 62  QVCRNLRASKNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121

Query: 118 RLKVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + +    N  +   + +  +  +  + GE   LP +E  +L +L  N     +K Q+F
Sbjct: 122 LTQGAQKKENLLQIENLMIDLNSHEVFLDGESLVLPNKEFELLVFLAKNPNIVFSKDQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+GL D   E + V  HI+++R+K+  +      +++    GY  
Sbjct: 182 EKIWGL-DAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRF 227


>gi|326204759|ref|ZP_08194614.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985130|gb|EGD45971.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 232

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++D    +   +G  ++   +        +S R D+  ++  L        
Sbjct: 4   ILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDC--SGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + I   S +P+I +S        +   + G +D + KP  +RE++AR+  + RR + 
Sbjct: 62  DLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYEH 121

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++        +   G + +  D +  +  G    L  +E  ILE L     K   + ++ 
Sbjct: 122 NDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G +D + +   V+  I +LRKK+         V +    GY +
Sbjct: 182 EIVWG-YDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQL 227


>gi|253577429|ref|ZP_04854745.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843229|gb|EES71261.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 228

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         ++G  +           + +  +  V  ++  +   G    
Sbjct: 9   ILLVDDEPHIVQFLELGLQNEGFEVRTAGDGMTAVAIAAEFQPHVIVLDVMMP--GMDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119
           E+ R++R +   V +I ++    ++  +     G DD V KP    E+LAR+ A  R + 
Sbjct: 67  EVCRLLRKNGENVSIIMLTAKDEVEDRVKGLTIGADDYVVKPFSFEELLARIGARLRNQF 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    GP R+    ++     +V  L   E  +L+YL+ N G  ++KT I   ++G
Sbjct: 127 PALFGEVVIGPFRLDDRRKEIAYLDQVLELSPTEYELLKYLILNHGIVLSKTTILDKVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   EEN+VE +I  LR+KL ++     + + R  GY +D
Sbjct: 187 -YDFGGEENIVEVYIRSLREKLNDR-EHRLIRTLRGAGYRVD 226


>gi|269838215|ref|YP_003320443.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787478|gb|ACZ39621.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 236

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 35/239 (14%)

Query: 2   FVLIDD---------RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            +L++D         R L   GY  +   DG              L +  + D+  ++  
Sbjct: 4   ILLVEDARDLAQVIERELTAAGYRVVLAYDG---------RTALDLLAREQPDLVVLDWM 54

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L       LE+ R +R  S  P++ ++        +   + G DD + KP   RE+LARV
Sbjct: 55  LPQV--DGLEVLRRLRQESPTPVLMLTARSEEVDRVVGLELGADDYLTKPFSMRELLARV 112

Query: 113 AAIYRRL-----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
            A+ RR            K S      GP+ +        + G+   L   E R+L  LM
Sbjct: 113 RALLRRTDLVRQMLEADRKASTEAVRYGPLALDPVRHIATLDGQELDLTPTEFRLLHLLM 172

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + G+   ++ +   I+G  D+ V E  V++ + +LRKKL        +++   +GY +
Sbjct: 173 RHPGRAFGRSYLLDTIWG--DQFVGERSVDNAVLRLRKKLGPLGEA--IETVWGVGYRL 227


>gi|239820932|ref|YP_002948117.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239805785|gb|ACS22851.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 224

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ D           +++  ++ E  +   +    D++ ++  L       L
Sbjct: 3   ILLVEDDKVLADALSRALVQSAHAVDIVSTGEEADHALALGIYDLAILDIGLP--KLSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA  S +P++ ++ + +LQ  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVLRRLRARKSTMPVLMLTAFDTLQDRVRGLDLGADDYLAKPFDLPELEARVRALLRRST 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S    E G +R  + GR      +   L  RE  +LE LM   G+ V K Q+ + +YG 
Sbjct: 121 NSTPYLEHGLLRFDTVGRRVFYDKKPLDLSPRELAVLELLMMREGRVVGKEQMVNHLYGW 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            DE  + N +E ++ +LRKKL        + + R +GY +D
Sbjct: 181 GDEVGD-NAIEVNVYRLRKKLEPLGCE--IRTVRGMGYLMD 218


>gi|169344709|ref|ZP_02630248.2| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169297144|gb|EDS79259.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 231

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G   E   +      +    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPE--IDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A+ RR 
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   N  + G + V    R+     +   L  +E  +L+ L+ N+G  + +  +   I
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQHIQTIRGVGYKFTSN 230


>gi|161507256|ref|YP_001577210.1| response regulator [Lactobacillus helveticus DPC 4571]
 gi|160348245|gb|ABX26919.1| Response regulator [Lactobacillus helveticus DPC 4571]
          Length = 240

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 112/237 (47%), Gaps = 23/237 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   V +     F  +G    ++++G  +++   + +++ + D+  ++  L  K 
Sbjct: 5   ILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDM--FKENADKYDLITLDLNLPKK- 61

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++
Sbjct: 62  -DGIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALH 120

Query: 117 RRLKVSNN-----------RAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANR 164
           RR+ +  +             +T  +++  D R+     + V  L  +E  +L  +    
Sbjct: 121 RRVMMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLLYTMAQKP 180

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 181 KQVFSRDQLLDLVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|75763337|ref|ZP_00743078.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228908456|ref|ZP_04072299.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|74489174|gb|EAO52649.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228851247|gb|EEM96058.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
          Length = 228

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++    + +  E +    ++    I   ++       
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQHYTV--VVASDGLEGMTQFNKQSFDLILLDVMMPNLNGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 71  EVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G
Sbjct: 131 KNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E  ++++HI  LRKKL        + + + +GY ID
Sbjct: 191 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKID 227


>gi|315037993|ref|YP_004031561.1| Response regulator [Lactobacillus amylovorus GRL 1112]
 gi|312276126|gb|ADQ58766.1| Response regulator [Lactobacillus amylovorus GRL 1112]
          Length = 240

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 110/237 (46%), Gaps = 23/237 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   V +     F  +G    ++++G  +++   + +++ + D+  ++  L  K 
Sbjct: 5   ILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDM--FKENADKYDLITLDLNLPKK- 61

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++
Sbjct: 62  -DGIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALH 120

Query: 117 RRL-----------KVSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANR 164
           RR+           K  +   ET  +++    R+     +    L  +E  +L  +    
Sbjct: 121 RRVMMEEKPALLQEKKQDYDIETEHLKISKSRREVLFDAQPVTDLTPKEFDLLYTMAQKP 180

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 181 KQVFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|264680517|ref|YP_003280427.1| two component heavy metal response [Comamonas testosteroni CNB-2]
 gi|262211033|gb|ACY35131.1| two component heavy metal response [Comamonas testosteroni CNB-2]
          Length = 235

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +      G++G  ++  ++      L +    D+  ++  L   G   L
Sbjct: 9   LLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLP--GIDGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +   +R   Q P++ ++    ++  +    +G DD + KP    E++AR+ A+ RR   
Sbjct: 67  AVLAALRQSRQTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGLQ 126

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +          G+   L  +E  +L  L+  +G+ +++T++ S 
Sbjct: 127 AQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQ 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +   E NVVE  + +LR KL        + + R +GY ++
Sbjct: 187 VWDM-NFDSETNVVEVAVRRLRLKLDAPFELPLLHTVRGMGYVLE 230


>gi|237797233|ref|ZP_04585694.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020083|gb|EGI00140.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 222

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++         +  +S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLP--GMSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R      P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+KL    G   ++++R  GY
Sbjct: 181 DGENE-RDSNVIEVHVNHLRRKL----GRAVIETRRGQGY 215


>gi|229032673|ref|ZP_04188636.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
 gi|228728672|gb|EEL79685.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
          Length = 247

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 101/224 (45%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           +++   +      L      D+  ++  L        
Sbjct: 30  ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPD--IDGY 87

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR   
Sbjct: 88  SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 147

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + +
Sbjct: 148 KEAETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 207

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 208 WG-YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 246


>gi|227550077|ref|ZP_03980126.1| response regulator [Enterococcus faecium TX1330]
 gi|257885994|ref|ZP_05665647.1| two-component system response regulator [Enterococcus faecium
           1,231,501]
 gi|293568562|ref|ZP_06679881.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|307287256|ref|ZP_07567324.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|325571902|ref|ZP_08147192.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|227180794|gb|EEI61766.1| response regulator [Enterococcus faecium TX1330]
 gi|257821850|gb|EEV48980.1| two-component system response regulator [Enterococcus faecium
           1,231,501]
 gi|291588736|gb|EFF20565.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|306501713|gb|EFM71005.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|325155630|gb|EGC67834.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 226

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +  S+  + ++     L+   + +   +   L+      L
Sbjct: 3   ILIVDDEEKILEIIDAYLVANHYSV--YKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        L     G DD + KP   +E++AR+  + RR + 
Sbjct: 61  TVCRKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTET 120

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N     +  G + V+ + R   +      L   E  IL  L++   K  +++ +   +
Sbjct: 121 LSNPNKLSSSNGELIVYPESRQVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            G+ +    +  ++SHI  LR K+ N       + +    GY  
Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223


>gi|311897734|dbj|BAJ30142.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 256

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 92/230 (40%), Gaps = 17/230 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D   +    +G  +                R D+  ++  +       L 
Sbjct: 20  LVVDDEPALRDALESSLAFEGYQVATATDGYEALAAVERDRPDLVLLDIMMPR--MDGLT 77

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
             R +R+    VP++ ++   ++   +   D G DD + KP    E+LARV A+ RR   
Sbjct: 78  AVRRMRSRGDTVPVLMLTARDAVGDRVTGLDVGADDYLAKPFELDELLARVRALLRRNAL 137

Query: 120 -----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                      +          +R+ +  R+    G    L R E  +LE  +++  + +
Sbjct: 138 AAEAAARTAADEDGGEVLSFADLRMNTATREVTRGGHTIELTRTEFMLLEMFLSHPRQVL 197

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + QI  A++G FD     N ++ ++  LR+K         + + R +GY
Sbjct: 198 TREQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEQHGMPRIIQTVRGVGY 246


>gi|307546911|ref|YP_003899390.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218935|emb|CBV44205.1| two component transcriptional regulator, winged helix family
           [Halomonas elongata DSM 2581]
          Length = 254

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 97/234 (41%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            + ++D   +    +    D+G   +    G ++L   E   S A  D+  ++  L   G
Sbjct: 16  ILCVEDNPEIGRMLVERLADEGHHCDRVSDGESALIALEGGASVAGYDLVMLDLMLP--G 73

Query: 58  EKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              LE+ R +R   S+ P++ ++   +++  +   + G DD V KP H   +LARV A+ 
Sbjct: 74  LDGLEVCRRLRRQDSRTPVLMVTAKAAIRDVVLGLEIGADDYVTKPFHMSILLARVQALL 133

Query: 117 RRLKVSN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR +  +              G + + SD     + G    L  +E  +L     + G  
Sbjct: 134 RRHRHPDAGDDGIVETPPMVHGELVIDSDRHRVTLAGHALQLTAKEFALLALFARHPGHS 193

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             + ++   ++G  +    ++ V +HI++LR K+         + +   +GY  
Sbjct: 194 FTRGELLDRVWGE-EFDGYDHTVNTHINRLRNKIETDPARPRFIQTVWGIGYRF 246


>gi|289555184|ref|ZP_06444394.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 605]
 gi|289439816|gb|EFD22309.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 605]
          Length = 263

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  +E  +  +           DV  ++  L       LE
Sbjct: 41  LLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDV--DGLE 98

Query: 63  LPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           + R +R  S V  P + ++   S+   +    SG DD + KP    E++AR+  + RR  
Sbjct: 99  ILRRVRE-SDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 157

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++     G + +    R+    G    L   E  +L +LM N  + +++T+I   
Sbjct: 158 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 217

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D A   ++V+ +IS LRKK+ +      + + R +GY +
Sbjct: 218 VWN-YDFAGRTSIVDLYISYLRKKIDSDREP-MIHTVRGIGYML 259


>gi|228900485|ref|ZP_04064711.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           4222]
 gi|228964897|ref|ZP_04126002.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794835|gb|EEM42336.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228859162|gb|EEN03596.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           4222]
          Length = 242

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R +R    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRVREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 228

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMP--GMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPSGYQKDIQTVRGIGYIL 225


>gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
 gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
          Length = 228

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D + +          +G  +    +      L      D+  ++  L        
Sbjct: 4   ICCVEDDSAILTALQYTLSQEGYEVMTAMTKTQGLELIQQESFDLVLLDVTLPD--GSGY 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + +R  S   ++P+I ++        +   D G DD + KP   RE+++R+ ++ RR
Sbjct: 62  EICKRMREDSRLKEIPVIFLTACDDEVNIVMGLDLGADDYITKPFRVRELISRMNSVLRR 121

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K +        + + +         +   L   E R+L  L  +R + + + Q+F A
Sbjct: 122 AGKKQAETTINYQDLSINTIAARVFKNNQEVFLTGMEYRLLLILATHRNQVMTRDQLFEA 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I+ L  E V +N +  +I +LR+KL +       + + R LGY +
Sbjct: 182 IWDLGGEYVNDNTLTVYIKRLREKLEDDPAHPQLIRTIRGLGYKL 226


>gi|187932993|ref|YP_001886720.1| ResD family transcriptional regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721146|gb|ACD22367.1| transcriptional regulatory protein ResD [Clostridium botulinum B
           str. Eklund 17B]
          Length = 223

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 105/223 (47%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         DG ++  F + + EE L   ++E +  I   ++      L
Sbjct: 5   ILIVEDELKIRFLIRDYLLKDGFNI--FEASDGEEGLFQFSKEKIDLIILDIMMPKMNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   +R  S VP+I ++     +  L+ +  G DD + KP   + ++A+V A+ +R + 
Sbjct: 63  EMLEKLREVSNVPVIFLTAKGEEEDKLEGYQFGADDYMTKPFSPKVLVAKVKALLKRTRE 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + ++      + V     + +V  ++  L  +E  +L YL+ N    +++  I   ++G
Sbjct: 123 DLDSSIQNFNGLSVNQLSHEVKVNDKIILLSPKEYELLIYLINNESIALSRDNILDNVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D   +   V+++I +LR+KL +K     + + R  GY  + 
Sbjct: 183 I-DYYGDIRTVDTNIKRLREKLLDK--SSYIVTVRGSGYKFEV 222


>gi|184200526|ref|YP_001854733.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
 gi|183580756|dbj|BAG29227.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
          Length = 228

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD A + +    +   +    +  ++     E  ++S   D+  ++  L   G   
Sbjct: 5   ILVVDDDAALSEMIGIILASEDFEPVYCYDGSSAREVFRAS-DPDLILLDLMLP--GMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +++ + IRA S VP++ ++        +   ++G DD V KP    E++ARV A  R + 
Sbjct: 62  IQVCQQIRAESDVPVVMLTAKSDTADVVRGLEAGADDYVPKPFKPAELVARVKARLRPMD 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        G I +   G      GE   L   E  +L  L  +  +  ++ ++   ++G
Sbjct: 122 RGVTQEITLGDIVIDVTGHTVTRGGEEIFLTPLEFDLLATLARSPHQVFSRDELLRDVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
            +  A +  +V  H+ +LR K+ R+    + V + R +GY 
Sbjct: 182 -YPHAADNRLVNVHVQRLRSKVERDPENPEVVLTVRGIGYK 221


>gi|332652879|ref|ZP_08418624.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium
           D16]
 gi|332518025|gb|EGJ47628.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium
           D16]
          Length = 226

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D        DG +++     +    L +    D++ ++  L   G   +
Sbjct: 3   ILIVEDEAELCDTIAEGLELDGYAVDRCYDGKVAHELLAVETYDLAVLDLNLP--GMDGM 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R  +Q + ++ +S   S+   +   D+G +D + KP    E+ AR+ ++ RR  
Sbjct: 61  DVLREVRKVNQELKVLILSARGSVSDKVQGLDNGANDYLAKPFAFEELEARIRSLLRRSF 120

Query: 121 VSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V  N       I + +  R   V GE  PL ++E  ILEY M +  K +++ ++   I+ 
Sbjct: 121 VQENTVLVWNAISLDTAKRIACVNGEQIPLTKKELSILEYFMLHPTKVISQEELMEHIWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +     N V  HI+ LRKKL+  L +DP+ ++   GY +
Sbjct: 181 M-EIDSFSNAVRVHIATLRKKLKQALAYDPIVTRIGQGYCL 220


>gi|323529546|ref|YP_004231698.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323386548|gb|ADX58638.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 230

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +     +G +++        E    +   D+  ++  L  K    +
Sbjct: 13  LLLVEDDEMIAEPVLDSMRREGYAIDWAQDGRAAELSLGNGVYDLVLLDLGLPRK--DGI 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           E+    R    + P+I ++   ++   +   D+G DD + KP    E+ ARV A+  RR 
Sbjct: 71  EVLNAYRSQGGEAPVIILTARDAVDDRIRGLDAGADDYLVKPFDLNELAARVRALSRRRT 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +     +    G   PL  RE  +L+ L+    +   K ++   +YG
Sbjct: 131 GQKQPVYTHGELTLDPAAHEVTKSGVPVPLVPREFTLLQVLIEAPARVFTKAELEDKLYG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E V  N +E H+  LR+K+    G + + + R +GY +
Sbjct: 191 -WGEEVGSNTIEVHVHSLRRKI----GAEQIVTVRGVGYRL 226


>gi|302553204|ref|ZP_07305546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470822|gb|EFL33915.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 233

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 99/235 (42%), Gaps = 28/235 (11%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++        DG  +    +G + LE         R D++ ++  +   G 
Sbjct: 8   LFVEDDDVIREATQLALERDGFVVTAMPDGLSGLEAFRAD----RPDIALLDVMVP--GL 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 62  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121

Query: 119 LKVS-------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
              +                   G + V ++G +    G    L   E R+L    +  G
Sbjct: 122 FGHAGGGRAEEPASPADGGVLTFGDLEVDTEGMEVRRAGRPVALTPTEMRLLLEFSSAPG 181

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +++ ++   ++  +    +  VV+ H+ +LR+K+    G D +++ R  GY +
Sbjct: 182 TVLSRDKLLERVWD-YGWGGDTRVVDVHVQRLRQKI----GQDRIETVRGFGYKL 231


>gi|300768408|ref|ZP_07078309.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494023|gb|EFK29190.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 242

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 103/239 (43%), Gaps = 25/239 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDD----GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   V +     F  +      + +G  ++E   + +     D+  ++  L   G
Sbjct: 3   LLMIEDNKSVSEMMAMFFKKEKWDAHFAYDGNEAVEM--FNEDVDGWDMVTLDLNLP--G 58

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           +  +++   IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A++
Sbjct: 59  KDGMQVSADIRKASPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALH 118

Query: 117 RRLKVSNNRA-------------ETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMA 162
           RR  ++                 +T   ++ +  R+  +  +    L  +E  +L+ L  
Sbjct: 119 RRADLAKTTLADQPASTVSSFDVQTDHFKLNTKTREAYLADKQIRDLTPKEFDLLKTLAQ 178

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K G   + +   +GY  D
Sbjct: 179 KPRQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KAGPQIIQTVWGVGYKFD 235


>gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 223

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIVEDDINLNRQLADALKEAGYVVDTAFDGEEGHFLGDTEPYDAIILDIGLPE--MDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    R A    P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  TVLEKWRGAGRGTPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    GP+R+ +      V G+   L   E R+L YLM ++G+ V++T++   +Y 
Sbjct: 121 GHSSSEIICGPVRLDTKSSKASVDGKPLKLTSHEYRLLAYLMHHKGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|169247751|gb|ACA51690.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 271

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +G  +                R D   ++  L       L
Sbjct: 46  LLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPD--MDGL 103

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R+ R   +VP++ ++   +++  +    +G DD V KP    E++ R+  + RR  
Sbjct: 104 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 163

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + R +T    G + +  +  +    G+   L   E  +L  LM +  + ++K QI   
Sbjct: 164 AVSARPDTVLVVGDLTLDEESHEVSRGGQAIRLTATEFELLRCLMRSPRRVLSKAQILDR 223

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LR+K+ +      + ++R  GY +
Sbjct: 224 VW-SYDFGGQANVVEIYISYLRRKI-DAGRAPMIHTRRGAGYLL 265


>gi|50085985|ref|YP_047495.1| transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531961|emb|CAG69673.1| transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 226

 Score =  225 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +  I L       +E  N+        +    D+  ++  L       +
Sbjct: 4   ILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQSFDLVLLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ + IR  + VP++ IS    L+  ++  + G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  QVLKQIRQKTGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTNS 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +  +      QG+   L  RE  IL  LM +  K  +K  + 
Sbjct: 122 KDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFSKANLE 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y  FD  V  N +E +I  LR KL    G + + + R LGY +
Sbjct: 182 DKLYD-FDSEVTSNTIEVYIHHLRSKL----GKNFIRTIRGLGYRL 222


>gi|146340889|ref|YP_001205937.1| OmpR family two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146193695|emb|CAL77712.1| two-component transcriptional regulator (OmpR family),
           BaeR/ChvL/OmpR-like [Bradyrhizobium sp. ORS278]
          Length = 231

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G+++             +  R D+  ++  +       L
Sbjct: 5   ILIVDDDPHIREVVRVALSKAGMAVTEAADGRAALARFADDRPDLIVLDVGMPEF--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  SQVP++ +S        +   + G DD V KP   RE++ARV  I RR+  
Sbjct: 63  EVCRRIRRTSQVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVNVILRRVAT 122

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +          G +R+               L   E  I+  L+       ++ QI SA
Sbjct: 123 GHRSDEAEELVHGRLRLDPQQHLARFGDTPLTLTALEFSIVRTLLTRPAVVFSREQIMSA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Y L +  V +  ++SHI  +R KL      D +++   +G+ +
Sbjct: 183 AYQL-NIQVSDRTIDSHIRNIRAKLATAGCDDAIETVHGVGFRL 225


>gi|191170729|ref|ZP_03032281.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Escherichia coli F11]
 gi|300974717|ref|ZP_07172706.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300981340|ref|ZP_07175476.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301050614|ref|ZP_07197482.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|190908953|gb|EDV68540.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Escherichia coli F11]
 gi|300297680|gb|EFJ54065.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300308850|gb|EFJ63370.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300409000|gb|EFJ92538.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|307629398|gb|ADN73702.1| DNA-binding response regulator [Escherichia coli UM146]
 gi|324010967|gb|EGB80186.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
          Length = 239

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNV--NGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 65  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 124

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +        + +    R+  +  +   L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|325498579|gb|EGC96438.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii
           ECD227]
          Length = 229

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 13  ILLIEDDRLIGDGIKTGLIKMGFSVDWFTGGREGKEALYSAPYDAVILDLTLP--GIDGR 70

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R  R +  + P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 71  DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE  PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 131 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LR+KL    G   + +   +GY++
Sbjct: 190 TWDEEVTSNAVEVHIHHLRRKL----GSGFIRTVHGIGYTL 226


>gi|254447699|ref|ZP_05061165.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium HTCC5015]
 gi|198263042|gb|EDY87321.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium HTCC5015]
          Length = 229

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + D  +     +G ++       E EEWL   + + +  ++  L       
Sbjct: 5   ILIVEDEPAIADTLLYALKKEGFNVHWAQLGGEAEEWLSCHSADGIV-LDVGLPDT--NG 61

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL + IR + +QVP+I ++        +   + G DD V KP   RE++AR+ AI RR 
Sbjct: 62  FELCKRIRQNNTQVPIIFLTARKEEVDRIVGLEIGGDDYVVKPFSPRELVARIKAILRRA 121

Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S++ A        ++  ++ +     GE   L   E RIL  L+   G  +++ Q+  
Sbjct: 122 SRSDDIAFQSVAPSLMQHDANRQCIVFSGEAVDLTLYEYRILLALLERAGHVLSRAQLMD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           A +     A  +  V++HI  +R +L++     DP+ + R LGYS+
Sbjct: 182 AAW-SDPSASFDRAVDTHIKGIRARLKSIRPDLDPIRTHRGLGYSL 226


>gi|162149578|ref|YP_001604039.1| phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788155|emb|CAP57760.1| putative phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 239

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +      E      +  R D+  ++  L   G   L
Sbjct: 16  ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLP--GLSGL 73

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R +R   A   +P+I ++        +   D G DD V KP     + AR+ A+ RR
Sbjct: 74  DVCRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRR 133

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + + +     E  G    L   E RILE+ + +  +  ++  +   ++
Sbjct: 134 APPAEQMLSFADVTLDTVAHRAERNGRQLTLGPTEYRILEFFLRHPRQVFSREDLLQRVW 193

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                 VE   V+ HI +LR  L      D V + R  GY++D
Sbjct: 194 ERG-VHVEPRTVDVHIRRLRLILNGPGEADIVRTVRAAGYALD 235


>gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 267

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +      G +G  +    +      LQ     D+  ++  L       L+
Sbjct: 47  LLVEDDPAIAEPLARALGREGYEVSAQTTGGAA--LQQVGGCDIVILDLGLPD--MDGLD 102

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA    +P++ ++        +   DSG DD V KP    E+LARV A+ RR   
Sbjct: 103 VARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRAGG 162

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   E   +RV               L  +E  +L  L+ + G  V++ Q+   ++
Sbjct: 163 EVTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDLLRVLIRDAGSVVSREQVMREVW 222

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G  D +     ++ H+S LR+KL  +      + + R +G+  +
Sbjct: 223 G-SDPSGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGMGFRFE 265


>gi|119512472|ref|ZP_01631553.1| two-component system response regulator [Nodularia spumigena
           CCY9414]
 gi|119462876|gb|EAW43832.1| two-component system response regulator [Nodularia spumigena
           CCY9414]
          Length = 230

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D    +   +G S++            +    D+  ++  L   G+  L
Sbjct: 3   ILLVDDEVELTDPLSRVLKREGYSVDMAYDGATGSEFAAGGTYDLLILDWMLP--GKTGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ ++   +L   ++  D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  EICQELRRQGKATPVLFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRAG 120

Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++   TG      + + S+ +    QG +  L ++E ++L+Y M N G  +   QI  
Sbjct: 121 SPSHETTTGRLTVADLELDSENQVAYRQGRIIELSQKESQLLQYFMENTGHLLTHAQILQ 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++    E    NV+ + I  LR+K+        + +    GY  
Sbjct: 181 NLWQQDHEQPNSNVIAALIRLLRRKIEVGKETPLIHTVYGKGYRF 225


>gi|58337060|ref|YP_193645.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|58254377|gb|AAV42614.1| response regulator [Lactobacillus acidophilus NCFM]
          Length = 240

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 109/237 (45%), Gaps = 23/237 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   V +     F  +G    ++++G  +++   + +++ + D+  ++  L  K 
Sbjct: 5   ILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDM--FRKNADKYDLITLDLNLPKK- 61

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++
Sbjct: 62  -DGIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALH 120

Query: 117 RRLKVSNN-----------RAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANR 164
           RR+ +                 T  +++  + R+     +    L  +E  +L  +    
Sbjct: 121 RRVMMEEEPDTAKEDKQDYEITTKHLKISKNRREVLFDKQPVTNLTPKEFDLLYTMAQKP 180

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 181 KQVFSREQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|323132633|gb|ADX20063.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 228

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 9   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPD--EDGL 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 67  HFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +          G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 127 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 187 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 222


>gi|116511831|ref|YP_809047.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107485|gb|ABJ72625.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 228

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 104/225 (46%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++++D   + D        +   +    +G  +LE  E  Q+    DV  ++  +     
Sbjct: 6   LIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFE--QAKPAVDVVLLDWMIP--KL 61

Query: 59  KVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             L + R ++      P+I ++    +   +   D+G DD + KP    E+LAR+  I+R
Sbjct: 62  DGLTVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFR 121

Query: 118 RLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   S ++  E   ++V       EV G+   L +RE  +L Y + +RG  V++  I   
Sbjct: 122 KWSTSCSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDD 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G+ D   +EN V++++  LR K+        +++ R +GY ++
Sbjct: 182 VWGM-DFDGQENTVDAYVRYLRAKIDLPNHKSLIETVRGVGYRLN 225


>gi|28870545|ref|NP_793164.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213970019|ref|ZP_03398151.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301381374|ref|ZP_07229792.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062145|ref|ZP_07253686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302130455|ref|ZP_07256445.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28853793|gb|AAO56859.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925123|gb|EEB58686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
          Length = 222

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++         +  +S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLP--GMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R      P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGTDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+KL    G   ++++R  GY
Sbjct: 181 DGENE-RDSNVIEVHVNHLRRKL----GRAVIETRRGQGY 215


>gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 241

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 100/230 (43%), Gaps = 17/230 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +++DD   +              ++   +      +  + + D+  ++  L    GE+VL
Sbjct: 5   LVVDDEPAIVTLLEYNLKQANFEVQSATNGVDALSMAENGQFDIVLLDLMLPQMSGEQVL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +  R+ R  +  P+I ++   +    +   + G DD + KP   RE++AR+ A+ RR   
Sbjct: 65  KQLRMDR--NDTPVILLTAKDTEFDKVFGLEMGADDYIPKPFSPREVIARINAVLRRYEK 122

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     K + N   TGP  +           +   L  +E  ++EYL+++  + ++
Sbjct: 123 SAAASETPATKSAENVETTGPFTIDHKKYRVSADSKNLKLTPKEFELMEYLVSHENQVLS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + Q+   ++G FD + +  +V+  I+ LR+K+  +      + + R  GY
Sbjct: 183 RDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIEPDPKRPKYLRTVRGFGY 231


>gi|254387605|ref|ZP_05002844.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294815008|ref|ZP_06773651.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443376|ref|ZP_08218110.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|176045579|gb|ACB72855.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701331|gb|EDY47143.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327607|gb|EFG09250.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 270

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +        +G  +                R D   ++  L       L
Sbjct: 45  LLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPD--MDGL 102

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R+ R   +VP++ ++   +++  +    +G DD V KP    E++ R+  + RR  
Sbjct: 103 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 162

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + R +T    G + +  +  +    G+   L   E  +L  LM +  + ++K QI   
Sbjct: 163 AVSARPDTVLVVGDLTLDEESHEVSRGGQAIRLTATEFELLRCLMRSPRRVLSKAQILDR 222

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LR+K+ +      + ++R  GY +
Sbjct: 223 VW-SYDFGGQANVVEIYISYLRRKI-DAGRAPMIHTRRGAGYLL 264


>gi|148273519|ref|YP_001223080.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831449|emb|CAN02409.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 283

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +         G  +E          + +    D+  ++  L   G   L
Sbjct: 33  ILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLP--GLDGL 90

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IRAH   S VP++ ++     +  ++  D+G DD + KP   RE++ RV A+ RR
Sbjct: 91  EVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRR 150

Query: 119 L---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V       GP  +    R+    G +  L  RE  +L +L+ N  +   +  +  
Sbjct: 151 TVPEAVPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLLR 210

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G   E  + + V  H+ +LR+K+  +      + +   +GY  
Sbjct: 211 QVWGW--EIGDLSTVTVHVRRLREKIEADPAHPVLLGTVWGVGYRF 254


>gi|160880986|ref|YP_001559954.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160429652|gb|ABX43215.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 224

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 111/225 (49%), Gaps = 13/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKGE 58
           +++DD + ++         D +S   ++ LE E   Q+      ++D+S I   ++    
Sbjct: 7   LVVDDESRMRK-----LVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKM 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              ++ + IR +S+VP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI RR
Sbjct: 62  DGWQVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRR 121

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  +   E G I +     + ++      L  +E  +L Y + NRG  +++ +I + +
Sbjct: 122 SIQTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +  +D   +   +++H+ KLR K+ +K   D + +   +GY  + 
Sbjct: 182 WN-YDYFGDARTIDTHVKKLRSKMGDKG--DYIKTIWGMGYKFEV 223


>gi|3511129|gb|AAC33719.1| regulatory protein CopR [Salmonella enterica subsp. enterica
           serovar Dublin]
          Length = 248

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 25  ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P I ++   S++  +   ++G +D + KP    E+L RV A  R+   
Sbjct: 83  QVLRALRTAHQSPFICLTARDSVEDRVKGLEAGANDYLVKPFSFGELLGRVRAQLRQHVP 142

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+        + + R +GY +
Sbjct: 202 NFDSETNTVDVAIRRLRAKVDEPFEKKLIMTVRGMGYRL 240


>gi|226310588|ref|YP_002770482.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093536|dbj|BAH41978.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 239

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 23/236 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   + +    +  ++G S+    S E    L S   R ++  ++  +       
Sbjct: 5   ILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPN--MSG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR    +P++ +S        +  F+ G DD + KP    E+LAR+ A  RR +
Sbjct: 63  YELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRRYE 122

Query: 121 VSNNRAE----------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                 E                   + +  +     V  +   L  +E ++L +L  N 
Sbjct: 123 RIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAENA 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G    + QI+  ++G        N V  HI  LR+KL        + ++   GY  
Sbjct: 183 GIVFTREQIYDRVWGYG--YGSLNTVTVHIKNLREKLET--ERQFIKTQWGTGYVF 234


>gi|281356725|ref|ZP_06243216.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281316852|gb|EFB00875.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 230

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +      G +           +  ++   D++ ++  L   G    
Sbjct: 3   ILLVEDDARTADFILKGLQQSGYTTVHAADGRDGLFKATTESCDLAVVDIMLP--GLDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +RA   ++P+I +S   S+   +    +G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TLIEKLRAAGIKLPVIVLSARSSVDDKIRALQTGGDDYLVKPFSFSELIARIQALLRRAS 120

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +    R          +   E  +LEYL  N G+ V+KT I   ++
Sbjct: 121 ATAEPSTLTVGDLSIDLLSRKVYRGSTRIDIQPLEFTLLEYLARNAGRVVSKTMIMEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++   + N+VE+ + +LR+KL        + + R  GY ++
Sbjct: 181 -EYNFDPQTNIVETRMCRLREKLDKPFKEKLLHTVRGFGYVLE 222


>gi|24376120|ref|NP_720163.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24351154|gb|AAN57607.1|AE015896_5 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 231

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        D   S++  +  E   +       D + I+  L       +
Sbjct: 3   LLLVEDDVALQTNLKQHLLDAHYSIDVASDGEEGLFQAVEYNYDAAIIDVGLP--KLDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L R IR   +  P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     GP  + +   +   +GE+  L   E ++ E  M ++G+  +KT +   IY 
Sbjct: 121 GKASPIITNGPFSLNTSSLEVRKEGELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +LRKKL     ++ +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|313114393|ref|ZP_07799922.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623287|gb|EFQ06713.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 226

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +F+L DD +L+  G    F   G +L+   +L   E L S  + D+  ++  L       
Sbjct: 4   LFLLEDDLSLI-SGLTFAFKKQGFALDTARTLAEAEVLWSDRKYDLLVLDVSLPD--GSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  + +R  S VP++ ++        +   + G DD + KP     +L+RV A+ RR  
Sbjct: 61  FDFCQKVRRTSNVPILFLTASDEEMNIIMGLELGGDDYLTKPFKLGVLLSRVNALLRRAN 120

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S+      E+G I V          G +  L   E ++L + M +    ++K QI  A+
Sbjct: 121 ASSAGEPVLESGSITVRLLQGQAYKNGILLELTGAEYKLLCFFMQHPNAVLSKEQILDAL 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +    + ++ + +  +I +LR K+ +  G    + + R +GY   WN
Sbjct: 181 WDCDGDYIDSSALTVYIRRLRMKIEDDPGKPQMLLTVRGMGYK--WN 225


>gi|255601445|ref|XP_002537677.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
 gi|223515490|gb|EEF24706.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
          Length = 228

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         + G  +   ++      L +S   +   ++  L G G   L
Sbjct: 6   LLIVEDNERVALFLKKGLSESGYEVHHADNGRDGMLLAASTPYEAIIMDRMLPG-GIDGL 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R   + VP++ +S    +   +    SG DD + KP    E+LARV AI RR +
Sbjct: 65  SIIEALRKTGNNVPILILSAMAEVDDRIKGLQSGGDDYLIKPFSFGELLARVEAIIRRSR 124

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               R     G + +          G+   L  RE  +LEYLM +  K V +T +   ++
Sbjct: 125 ELTERTYLVVGNLHMDIMKHKVYRDGKAILLQPREFHLLEYLMRHANKVVTRTMLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + NVV+ HISKLR+KL        + + R  GY +
Sbjct: 185 D-YDFDPQTNVVDVHISKLRQKLDIDSLPPMLKTIRNAGYML 225


>gi|196041195|ref|ZP_03108490.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027903|gb|EDX66515.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 232

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKV--FSAYNGEEALEIINNNSIQIAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+         + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEEDSKEPKFIQNVWGVGYKIE 231


>gi|197118248|ref|YP_002138675.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197087608|gb|ACH38879.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 226

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGK-GEK 59
           ++I+D   + +        +G       +L+  E L++  R   D+  ++  L G  G  
Sbjct: 5   LIIEDEKDLAELLSFNLEREGYK--TVIALDGAEGLEAVERVQPDLILLDLMLPGMFGTD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           V +  +     + +P++ ++        +  F+ G DD V KP   RE++ RV A+ RR 
Sbjct: 63  VCKTVKKSEKSAHIPVVMLTAKGEEIDKVVGFEVGADDYVIKPFSTRELMLRVKAVLRRK 122

Query: 120 K---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + N    G IR+ ++  +  V G+       E ++L  L+   G+  ++  +   
Sbjct: 123 APEPAATNIINVGGIRIDTERHEVTVNGDEINFTTTEFKLLYTLVMRFGRVQSRDVLLRD 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++G ++   +   V++HI++LR K+ N    D + + R  GY ++ 
Sbjct: 183 VWG-YNFVEDTRTVDTHITRLRTKMGNAG--DMIKTVRGFGYKLEV 225


>gi|28867608|ref|NP_790227.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213967848|ref|ZP_03395995.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301382485|ref|ZP_07230903.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302062264|ref|ZP_07253805.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302132919|ref|ZP_07258909.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28850843|gb|AAO53922.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213927624|gb|EEB61172.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|330961965|gb|EGH62225.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
 gi|330967264|gb|EGH67524.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331014914|gb|EGH94970.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 224

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYVVDIAATGLDGLYLAQHQAYDVVILDVNLPE--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R      ++ ++    L+  +   + G DD + KP    E+LARV  + RR + 
Sbjct: 61  EVLSRLRKTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|26992059|ref|NP_747484.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24987198|gb|AAN70948.1|AE016739_1 transcriptional activator CopR [Pseudomonas putida KT2440]
          Length = 225

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D             + G +++    L   + LQ +  E    +   ++  G +  
Sbjct: 3   LLVAEDEPKTGAYLQQGLAEAGFTVD--RVLTGTDALQHALSESYDLLILDVMMPGLEGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R++RA    VP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EVLRMVRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   + V    R     G+   L  +E  +LE LM  RG+ + K+ I S ++
Sbjct: 121 STAAQTTMKMADLEVDLLKRRATRSGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY +D
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKIDDDFAPKLIHTARGMGYMMD 222


>gi|297572158|ref|YP_003697932.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932505|gb|ADH93313.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 248

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A     G S+E   +             D+  ++  L        
Sbjct: 13  ILVVDDEPSIRELLSASLHFAGFSVETAATGRDAIRTYQEFDPDLVVLDVMLPDF--DGY 70

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   S +P++ ++    L+  L   ++G DD V KP    E++ R+  I RR  
Sbjct: 71  EVLRRMREQGSDIPVLFLTAKDDLRDKLQGLNAGADDYVTKPFSLEEVVTRIQVILRRTT 130

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S           + +  D  +   +G +  L   E ++L YLM N  + V+K QI   +
Sbjct: 131 PSEEDSALIRYHDLELNEDTYEVRRRGHMVELSPTEYKLLRYLMVNAERVVSKVQILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG------------FDPVDSKRFLGYSI 220
           +  +D   E ++VES+IS LR+K+ +  G               + +KR +GY +
Sbjct: 191 WD-YDWIGEASIVESYISYLRRKIDSADGLGITDPKEVAALVPLIHTKRGIGYVM 244


>gi|311111737|ref|YP_003982959.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943231|gb|ADP39525.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
          Length = 231

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 94/215 (43%), Gaps = 4/215 (1%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   + +    +   +G +     +             D+  ++  L   G+  +E+  
Sbjct: 12  DDDDALAEMIGIVLAQEGYNAVFCENGSRAFETFMRHSPDLVLLDLMLP--GKSGIEVCE 69

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            IR+ S VP+I ++     +  +   ++G DD + KP  H E++AR+ A  R  +     
Sbjct: 70  QIRSSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHLELMARIRARLRPRESRQLV 129

Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185
              G   +  DGR  + +G   P+   E  +L  L+   G+ +++ ++   ++G  D  V
Sbjct: 130 VRVGDTIMDMDGRTLKYKGVEVPMTPLEFDLLAALVRRPGQAMSRQELLETVWGYSD--V 187

Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++V  H+ +LR K  +      + + R +GY +
Sbjct: 188 SDSLVNVHVQRLRAKFTDIGAEQVIQTVRGVGYKV 222


>gi|260221381|emb|CBA29886.1| Transcriptional activator protein copR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 228

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +       +    ++  ++             D+  ++  L   G    
Sbjct: 3   ILIIEDEPKTGEYLRQGLKEASFIVDLLHNGNDGLHAALEDEHDLIILDVMLP--GMDGW 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R + R  ++VP++ ++    ++  +   + G DD + KP    E+LARV  I RR  
Sbjct: 61  EVMRNLRRKGNEVPVLFLTARDQVEDRIKGLELGADDYLVKPFSFAELLARVRTILRRGK 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V     +   + +    R     G+   L  +E  +LE LM  +G+ + ++ I S ++
Sbjct: 121 SGVEATSLKVADLELDLLRRRVTRAGKRIDLTSKEFGLLELLMRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAVRRLRSKIDDAFEPKLLQTVRGMGYVLE 222


>gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 239

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   +S +  E L+   + +  A+   L+  G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEV--VHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRLDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G   E   E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWGYRHE-GYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|124024341|ref|YP_001018648.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964627|gb|ABM79383.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 248

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +           L  +   D+  ++  +        
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYQVVTACDGNEALDLFHNCEPDLVVLDVMMP--KLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   +RV ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EHVAGIPNSGVIQVAELRVDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|134291789|ref|YP_001115558.1| two component heavy metal response transcriptional regulator
           [Burkholderia vietnamiensis G4]
 gi|134134978|gb|ABO59303.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia vietnamiensis G4]
          Length = 225

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L    R DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVMLPV--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+  + RR   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETEHLAVGDLEIDVVRRRVKRGAVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220


>gi|1653495|dbj|BAA18408.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 234

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 11/223 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD A ++          G  +    + + EE + +    D   +   ++        + 
Sbjct: 2   VDDEASIRRILETRLSMIGYEV--VTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+     
Sbjct: 60  QELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGM 119

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S+   +   IR+ ++ R      E   L   E  +LE L++  G+  ++++I   +
Sbjct: 120 PGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +G   +  V+  VV+ HIS+LR KL  +    + + + R  GY
Sbjct: 180 WGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGY 222


>gi|330721286|gb|EGG99372.1| DNA-binding response regulator [gamma proteobacterium IMCC2047]
          Length = 218

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G +++   ++   E    +   D+  ++  L       +
Sbjct: 3   ILLVEDTVGLGEAIQDQITAEGHAVDWVETISHAETSLHATHYDLVLLDLMLPD--GSGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   IR A   VP+I ++    +   +   ++G DD + KP    E+ AR+AA+ RR  
Sbjct: 61  ELLIKIRKAGKTVPVIILTARDQISDRIKGLNAGADDYLVKPFDLSELSARIAAVSRRYA 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   + GP+ +          G    L  RE  + E  +   G  ++K+Q+   +Y 
Sbjct: 121 GNPNPLLQIGPLEIDLSKHLISRAGTSINLTAREWALFEAFIQRPGTLISKSQLEDHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F   +E N +E +IS+LRKKL    G D +++ R LGY +
Sbjct: 180 AFGTEIESNTIEVYISRLRKKL----GRDLLETVRGLGYRM 216


>gi|300118891|ref|ZP_07056604.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723736|gb|EFI64465.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 229

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL   A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGLG-SAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|127514186|ref|YP_001095383.1| two component heavy metal response transcriptional regulator
           [Shewanella loihica PV-4]
 gi|126639481|gb|ABO25124.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella loihica PV-4]
          Length = 238

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       + G ++    +         S   D+  ++  L        
Sbjct: 16  ILVIEDEIKIGDYLKKGLEEAGYTISLCRNGLDGYHCAISEHFDLIILDVMLPD--MNGW 73

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++   IR  +S +P++ ++   SL+  ++  +SG DD + KP    E+LARV  + RR  
Sbjct: 74  QILEKIRLNNSDIPVMFLTAKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLLRRGT 133

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++ ++      +++    R    +     L  +E  +LE L+ ++G+ + ++ I S ++
Sbjct: 134 KQLQSDTLTLHGLKLDITKRRASREQTKLHLTNKEFSLLELLVRHQGEVLTRSFIASQVW 193

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY +D
Sbjct: 194 DM-NFDSDTNVIDVAIRRLRAKVDDPFSVKLIHTVRGMGYKLD 235


>gi|310642107|ref|YP_003946865.1| response regulator (chey-like receiver domain and hth-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
 gi|309247057|gb|ADO56624.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
          Length = 230

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G   E   +   +E L +     +  I   ++  G   L
Sbjct: 5   ILVVDDDKDIVKLITKSLSYEGF--ETIPAYSGKEALCALKENHIDFIILDIMMPGMNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR     P++ +S        +   + G DD + KP   +E+ +R+ A +R++  
Sbjct: 63  DVCRSIRNSYNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFRKVDR 122

Query: 120 ------KVSNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++S NR  T  P+ +     +  +      L  +E +IL  LM N    + + +
Sbjct: 123 LLKEWNELSPNRERTDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLMHNPNNVLTRER 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+  ++G  DE  E N V  HI  +RKKL     +D + +   +GY 
Sbjct: 183 IYEYVWG--DEYGELNTVTVHIKNIRKKLG--PEYDFIKTIWGIGYK 225


>gi|257126116|ref|YP_003164230.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050055|gb|ACV39239.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 227

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +   ++     E           D   ++  L        
Sbjct: 3   LLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLP--KLDGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + IRA    VP++ ++   ++   +   D G DD + KP    E++AR+  + RR  
Sbjct: 61  EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N      ++V  D +     G +  L  RE  ILEYL+ N+GK + + +I   I+ 
Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++     NV++ +I  LRKK+ +      + + R LGY +
Sbjct: 181 -YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVL 220


>gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare
           ATCC 13950]
          Length = 239

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +          AR D   ++  +   G     
Sbjct: 16  LVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDAVILDVMMP--GMDGFG 73

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235


>gi|89896385|ref|YP_519872.1| hypothetical protein DSY3639 [Desulfitobacterium hafniense Y51]
 gi|89335833|dbj|BAE85428.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 225

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L  + G   +   + +  E L+  +  + S     L+       
Sbjct: 4   IMIVDDDPTIRELVCTLLKEGGF--DTCEARDGREALEKISEANPSLAVIDLMMPNMDGY 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R +   +P++ ++        +  F++G DD + KP    E+L RV A+ RR +
Sbjct: 62  ELCRQLRQYYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALLRRYR 121

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++   + G + +  +     + G    +P +E  +L  L    G+   + Q+   ++G
Sbjct: 122 IEASQTIQIGYVTLDKNSYSVILNGVGEDIPMKEFELLFKLGGFPGRTFTRDQLLEGVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D    E  ++ HI +LR++   +     + + R LGY ++ 
Sbjct: 182 -YDFDGNERTLDVHIGRLRERFPAEKSGFKITTVRGLGYRLEV 223


>gi|251778440|ref|ZP_04821360.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082755|gb|EES48645.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 223

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 105/223 (47%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         DG ++  F + + EE L   ++E +  I   ++      L
Sbjct: 5   ILIVEDELKIRFLIRDYLLKDGFNI--FEASDGEEGLFQFSKEKIDLIILDIMMPKMNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   +R  S VP+I ++     +  L+ ++ G DD + KP   + ++A+V A+ +R + 
Sbjct: 63  EMLEKLREVSNVPVIFLTAKGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKRTRE 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + ++      + V     + +V   +  L  +E  +L YL+ N    +++  I   ++G
Sbjct: 123 DLDSSIQNFNGLSVNQLSHEVKVNDNIILLSPKEYELLIYLINNESIALSRDNILDNVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D   +   V+++I +LR+KL +K     + + R  GY  + 
Sbjct: 183 I-DYYGDIRTVDTNIKRLREKLLDKSA--YIVTVRGSGYKFEV 222


>gi|299821621|ref|ZP_07053509.1| response regulator [Listeria grayi DSM 20601]
 gi|299817286|gb|EFI84522.1| response regulator [Listeria grayi DSM 20601]
          Length = 239

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         +   ++  ++ +  + L  + + D   I   ++  G+  +E
Sbjct: 8   LIVDDEDRIRRLLKMYLERESYLIDEADNGD--DALDMALKYDYDVILLDVMMPGKDGIE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR     P++ ++        +  F+ G DD + KP   RE++ RV A+ RR    
Sbjct: 66  VCKEIRMAKATPIVMLTAKGEESNRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRASGG 125

Query: 123 N----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +      + + ++     + GE   L  +E  +L ++     +  ++  
Sbjct: 126 EQGKDTLLSIGDTITFPNLTIDNESHLVTINGEKVNLTPKEYDLLYFMARTPERVHSREA 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
           +   I+  +D   +   +++H+ +LR+KL +        + +   LGY +
Sbjct: 186 LLKEIW-RYDFVGDLRTIDTHVKRLREKLYDISEEAGKMIVTVWGLGYKL 234


>gi|184154583|ref|YP_001842923.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|183225927|dbj|BAG26443.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
          Length = 229

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   L  +N  +    L +    D+S +   L+      
Sbjct: 3   ILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTM--PDISLVILDLMMPEMNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  MDVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    GP+ +  D  +   ++G+   L   E  IL  L ++  +  +   IF
Sbjct: 121 NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 227


>gi|218232702|ref|YP_002366911.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218160659|gb|ACK60651.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 227

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +         +   ++  ++  L       L
Sbjct: 5   ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWNLILLDVMLPN--ISGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  + V P+I ++   S+   +   D G  D + KP    E+LAR+ A  R   
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V     N+  +   + +    R+ +       L  RE  +L +LM +  + + + QI + 
Sbjct: 123 VIKEEENSSYQIADLYLDEKTREVKRGNHFVELTPREFDLLLFLMKHENQVLNREQIVTN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LR+K+   +    + + R +GY +
Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRRKIDCNVDVPLIHTVRGVGYVL 225


>gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 290

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +      E    +    + D+  ++  L        
Sbjct: 28  ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLP--KMDGF 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+  
Sbjct: 86  AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGP 145

Query: 122 SNNRAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  AE             G + V ++ R     GE   L   E  +LE L    G+ V 
Sbjct: 146 GSATAEIRDLPVGQGVLRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVP 205

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GYS
Sbjct: 206 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYS 257


>gi|306819875|ref|ZP_07453529.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552122|gb|EFM40059.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 236

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +   +      + +E L+ +   ++  I   ++       
Sbjct: 7   ILIVEDEKNISDILKFNLEKESYDIS--QRFDGKEGLEFALSNEIDLILLDIMLPSMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR     P+I ++        +   + G DD + KP   RE++ARV A  RR++ 
Sbjct: 65  EICKQIRKTKNTPIIMLTAKEEEVDKVLGLELGADDYITKPFSVREVVARVKANVRRVEM 124

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V++   +   I +        V+GE   +  RE  +L++L  +R +  ++ Q+ +
Sbjct: 125 IENSAVASQLLKFKDIEIDVSKYIVRVRGEEIKITFREFELLKFLAQHRDQVYSREQLLT 184

Query: 176 AIYGLFDEAVE-ENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++      V+ E  V+  + +LR+K+  +    + V +KR +GY  
Sbjct: 185 IVWEYEYIGVDSERTVDVTVRRLREKIEIDPSNPEFVITKRGVGYYF 231


>gi|238754408|ref|ZP_04615764.1| Two-component response regulator of virulence determinant [Yersinia
           ruckeri ATCC 29473]
 gi|238707441|gb|EEP99802.1| Two-component response regulator of virulence determinant [Yersinia
           ruckeri ATCC 29473]
          Length = 223

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLSVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLP--GEDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R H +++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRNHQAKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P  +    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIEFQPFMIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKKL+ +   D + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQVEHDKDVITTIRGQGYRFD 221


>gi|218234629|ref|YP_002369621.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218162586|gb|ACK62578.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 229

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|328461774|gb|EGF34010.1| response regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 112/237 (47%), Gaps = 23/237 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   V +     F  +G    ++++G  +++   + +++ + D+  ++  L  K 
Sbjct: 3   ILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDM--FKENADKYDLITLDLNLPKK- 59

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++
Sbjct: 60  -DGIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALH 118

Query: 117 RRLKVSNN-----------RAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANR 164
           RR+ +  +             +T  +++  D R+     + V  L  +E  +L  +    
Sbjct: 119 RRVMMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLLYTMAQKP 178

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 179 KQVFSRDQLLDLVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 233


>gi|289672518|ref|ZP_06493408.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae FF5]
 gi|302186898|ref|ZP_07263571.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae 642]
          Length = 224

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPE--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R      ++ ++    L+  +   + G DD + KP    E+LARV  + RR + 
Sbjct: 61  EVLSRLRKTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++     + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|269217323|ref|ZP_06161177.1| regulatory protein VanR [Slackia exigua ATCC 700122]
 gi|269129460|gb|EEZ60545.1| regulatory protein VanR [Slackia exigua ATCC 700122]
          Length = 238

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   + +    L   +G  ++          L      D++ ++  +       L
Sbjct: 13  ILLADDDPDILEVVSVLLASEGYRVDAARDGLEALALARH-PFDLAILDVMMPKA--SGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   +R  S  P++ ++        +    +G DD + KP    E+LARV A+ RR + 
Sbjct: 70  EVCERLRLSSNAPILFLTARSQDADKVAGLAAGGDDYLVKPFSTPELLARVKAMLRRYRQ 129

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +    + GP+ + +  R          L   E  +L  L  NRG+ V+  ++
Sbjct: 130 YGSAQGAQTGETIQAGPVLIDTRARRVSKGETPVALTDLEYEVLLALARNRGRVVSAREL 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++         N V +HI  LRKKL  +      V +    GY+ID
Sbjct: 190 YENVWRSMYLPQSNNTVMAHIKNLRKKLEADPRDPQIVRTVWGRGYTID 238


>gi|197295429|ref|YP_002153970.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195944908|emb|CAR57517.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 225

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L    R DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVMLPV--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+  + RR   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R  +       L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RETEHLAVGDLDIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220


>gi|15607742|ref|NP_215116.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis H37Rv]
 gi|148660372|ref|YP_001281895.1| putative two component DNA binding transcriptional regulatory
           protein TcrA [Mycobacterium tuberculosis H37Ra]
 gi|148821804|ref|YP_001286558.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis F11]
 gi|215402371|ref|ZP_03414552.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis 02_1987]
 gi|215410144|ref|ZP_03418952.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis 94_M4241A]
 gi|215425834|ref|ZP_03423753.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis T92]
 gi|253797536|ref|YP_003030537.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254230940|ref|ZP_04924267.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis C]
 gi|254363558|ref|ZP_04979604.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549559|ref|ZP_05140006.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260199607|ref|ZP_05767098.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|260203767|ref|ZP_05771258.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289441991|ref|ZP_06431735.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|289552854|ref|ZP_06442064.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289573201|ref|ZP_06453428.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289744315|ref|ZP_06503693.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis 02_1987]
 gi|289749099|ref|ZP_06508477.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T92]
 gi|294996116|ref|ZP_06801807.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis 210]
 gi|297633098|ref|ZP_06950878.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730076|ref|ZP_06959194.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN R506]
 gi|298524089|ref|ZP_07011498.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313657403|ref|ZP_07814283.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN V2475]
 gi|81668934|sp|O07776|TCRA1_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
 gi|288559204|sp|Q7D9K0|TCRA2_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
 gi|2222756|emb|CAB09978.1| PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
           PROTEIN TCRA [Mycobacterium tuberculosis H37Rv]
 gi|124599999|gb|EAY59009.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis C]
 gi|134149072|gb|EBA41117.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504524|gb|ABQ72333.1| putative two component DNA binding transcriptional regulatory
           protein TcrA [Mycobacterium tuberculosis H37Ra]
 gi|148720331|gb|ABR04956.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis F11]
 gi|253319039|gb|ACT23642.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414910|gb|EFD12150.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|289437486|gb|EFD19979.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289537632|gb|EFD42210.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289684843|gb|EFD52331.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis 02_1987]
 gi|289689686|gb|EFD57115.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T92]
 gi|298493883|gb|EFI29177.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326902434|gb|EGE49367.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis W-148]
 gi|328457319|gb|AEB02742.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 253

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++                 D   ++  L   G    
Sbjct: 25  ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLP--GIDGF 82

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+  R+ R     P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G +R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              EA   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 203 AAYEAR-SNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242


>gi|229132743|ref|ZP_04261589.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
 gi|228650753|gb|EEL06742.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
          Length = 242

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G ++  F++   EE L+     DV      ++      +
Sbjct: 16  ILIVDDDRDIIRFINVNLEQEGFTV--FSADNGEEALEVLNNNDVQLAILDVMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRIREKYSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A   +     +I
Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|154251400|ref|YP_001412224.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155350|gb|ABS62567.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 225

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIA-LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D  L    Y+     + G  ++     E       S+  DV  ++  L  +    
Sbjct: 3   ILVIEDD-LEAAAYVVKGLRESGHIVDHAADGEEGLTFALSSTFDVMIVDRMLPKR--DG 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L +   +R    + P++ +S    +   +    +G DD + KP    E+LAR+  + RR 
Sbjct: 60  LSVVETLREECVRTPVLFLSALGEVDDRIKGLKAGGDDYLTKPYAFAELLARIEVLVRRA 119

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R + G + +    R     G    L  RE R+LEYLM + G+ V +T +   +
Sbjct: 120 NPDQVRTRLQVGSLEIDLLARKVIRDGTEIDLQPREFRLLEYLMKHAGQVVTRTMLLENV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR K+        + + R  GYS+
Sbjct: 180 W-EYHFDPQTNVIDVHISRLRAKIDKNFEQPLLHTVRGAGYSL 221


>gi|50954116|ref|YP_061404.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950598|gb|AAT88299.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 240

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +G  +    +               +AI+  L   G    
Sbjct: 3   LLVVEDDPDMRGLVQRGLAAEGYDVTLMTNGVDALIALRDDTYSAAAIDVMLP--GMSGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R IR + + +P++ ++   +++  +   DSG DD + KP    E+ ARV A+ RR  
Sbjct: 61  ELCRHIRDSGTAMPILLLTARDAIEDRVHGLDSGADDYLTKPFAFAELAARVRALLRREP 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G + + S      V G   PL RRE  +L     N  K +++  I  +++G
Sbjct: 121 TGMRPQIIVGRLTIDSHEHQTLVSGHEMPLSRREFTLLRLFATNPDKTLSRADILESVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E +  NV++ ++S LRKKL        + ++R  GY +D
Sbjct: 181 TT-ENIGTNVIDQYVSYLRKKLDVAGAGLSIVTERGRGYRLD 221


>gi|116490235|ref|YP_809779.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|118586491|ref|ZP_01543935.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290889617|ref|ZP_06552707.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429]
 gi|116090960|gb|ABJ56114.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|118433055|gb|EAV39777.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290480815|gb|EFD89449.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429]
          Length = 230

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   E   +   EE L       D++ +   ++  G   
Sbjct: 4   ILVVDDDKEIAELLEIYIRNEG--NEPVLAYSGEEALSRLNTNPDIALMILDVMMPGMNG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ + +R  + +P++ +S        +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 62  FDVVKAVRKDTNIPILIVSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRSS 121

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                      + G + +  D  +     GE+  L   E  IL  L ++  +  +  +IF
Sbjct: 122 NEVKDEIPEVIDAGALTINKDSHEVKTSDGEIVQLTALEFGILYLLASHPNRVFSADEIF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++   +  V    V  H+S LR K++    G + + +   +GY ++ N
Sbjct: 182 ERVWQT-ESVVSAKTVMVHVSHLRDKIKEATNGDEVIQTVWGVGYKVEIN 230


>gi|323484205|ref|ZP_08089574.1| hypothetical protein HMPREF9474_01325 [Clostridium symbiosum
           WAL-14163]
 gi|323692080|ref|ZP_08106327.1| signal transduction regulator [Clostridium symbiosum WAL-14673]
 gi|323402447|gb|EGA94776.1| hypothetical protein HMPREF9474_01325 [Clostridium symbiosum
           WAL-14163]
 gi|323503880|gb|EGB19695.1| signal transduction regulator [Clostridium symbiosum WAL-14673]
          Length = 240

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 17/234 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSA---------IE 50
           +  +I+D   +++       + G   EGF + E   E L S  +    A          +
Sbjct: 4   LIYVIEDDENIRNLICVALENFGHRSEGFETAEEALERLGSIMKRGKEAYRELPSMFIFD 63

Query: 51  AFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
             L G  G   +   R +      P++ ++        +   D+G DD + KP    E+ 
Sbjct: 64  WMLPGMDGMTAIGKVRELEPLKGTPVLMLTAKDRETDIVMGLDNGADDYMTKPFGILELS 123

Query: 110 ARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           ARV  + +R       +     G +++  + R+    GE   L  +E  +L YLM +  +
Sbjct: 124 ARVRNLLKRSGTVREESTCLAAGDVKIDKETREVVSCGEKVELTLKEFELLSYLMEHMNR 183

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            V + ++   I+G +D   E   ++ HI  LR+KL++      + + R +GY  
Sbjct: 184 VVTRDELLDNIWG-YDYDGETRTLDMHIKTLRQKLKDAGQQ--IKTVRGVGYRF 234


>gi|229132720|ref|ZP_04261566.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196]
 gi|228650730|gb|EEL06719.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196]
          Length = 229

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++ +         G +++       E+ LQ    ED   +   ++  G    
Sbjct: 4   ILIIEDEAIIAELEKDYLEVAGYTVDI--DYSGEKGLQRVLLEDYDLLILDIMLPGIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQVRLKKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   +      + +    R   + G    L  +E  +L  +  +  +  +K ++F
Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFINGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G+ D   +   V  H+  +R+K+  +      +++   +GY  
Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227


>gi|218134085|ref|ZP_03462889.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991460|gb|EEC57466.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
           43243]
          Length = 240

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 95/236 (40%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +    ++         S   D+  ++  L       L
Sbjct: 5   ILIVEDEEQIARFLELELMHEGYTTCKADNGRSGLETAQSGECDLVLLDVMLPE--LNGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++  +
Sbjct: 63  EVLRRLRRTSNLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRRALKKSSM 122

Query: 122 SNNRAE-----------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           ++                      G +++        V      L +RE  +L+ L+ N 
Sbjct: 123 ADGAGTDGRSADDVKEAAVLANGDGRVKLDKKQHIVTVDCNNVELTQREFAMLQTLLENM 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +++  +   + G +D   E N+V+ ++  LR K+ +  G   + + R +GY I
Sbjct: 183 DIVLSRETLLDKVCG-YDYVGETNIVDVYVRYLRSKIDDAFGIKLIQTVRGVGYVI 237


>gi|317968518|ref|ZP_07969908.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 268

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 93/229 (40%), Gaps = 16/229 (6%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   V+   +      G  +      E    L    + D+  ++  L         +
Sbjct: 27  VVDDEPAVRRVLVMRLQLAGYQVVCAEDGEEALALFHKEQPDLVVLDVMLP--KLDGFAV 84

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--- 120
            R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+    
Sbjct: 85  CRRLRAESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRGS 144

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + V ++ R     GE   L   E  +LE L    G+ V + 
Sbjct: 145 ATNEPRDVPAGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVPRA 204

Query: 172 QIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           +I   ++G     A +  VV+ ++++LR KL  +    + + + R  GY
Sbjct: 205 EILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 253


>gi|150015478|ref|YP_001307732.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901943|gb|ABR32776.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 235

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        DG +    N+ +  E +      D+  I   ++      +
Sbjct: 6   ILIVDDEKEIRDLVDIYLKSDGFN--TINACDGLEAINLVRDNDIDLIILDVMMPNLNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR   ++P+I +S        +   + G DD + KP +  E++ARV +  RR  +
Sbjct: 64  ETCLKIREIKEMPIIMLSAKSEDIDKILGLNMGADDYLTKPFNPLELVARVKSQLRRFHM 123

Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                        N  +   +++  +  +  +   +  L   E  IL  L  +RGK  + 
Sbjct: 124 FGKNTNMLEVEEENIIQIEDLKIKLETHEVLLGDNIVKLTPTEFDILSLLAQSRGKVFSI 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             I+ +++   +    +N V  HI K+R+K+         + +   +GY ++
Sbjct: 184 ENIYESVWNQ-EFMTSDNTVMVHIRKIREKIEENPRNPRFIKTVWGVGYKVE 234


>gi|69248477|ref|ZP_00604751.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257878623|ref|ZP_05658276.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257883117|ref|ZP_05662770.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257891864|ref|ZP_05671517.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894434|ref|ZP_05674087.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|258616852|ref|ZP_05714622.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium DO]
 gi|260559336|ref|ZP_05831518.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208012|ref|ZP_05922690.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566892|ref|ZP_06447299.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium D344SRF]
 gi|293556475|ref|ZP_06675049.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|293563844|ref|ZP_06678277.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293567266|ref|ZP_06678620.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294615582|ref|ZP_06695438.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|294619807|ref|ZP_06699197.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|294622907|ref|ZP_06701820.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|314938083|ref|ZP_07845391.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943605|ref|ZP_07850362.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314949242|ref|ZP_07852591.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314952608|ref|ZP_07855600.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314992456|ref|ZP_07857878.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314997382|ref|ZP_07862337.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194414|gb|EAN08919.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257812851|gb|EEV41609.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257818775|gb|EEV46103.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257828224|gb|EEV54850.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830813|gb|EEV57420.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260074696|gb|EEW63016.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260077770|gb|EEW65483.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161298|gb|EFD09191.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium D344SRF]
 gi|291590015|gb|EFF21809.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291591525|gb|EFF23178.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|291593940|gb|EFF25424.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|291597679|gb|EFF28832.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291601354|gb|EFF31632.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291604214|gb|EFF33715.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|313588550|gb|EFR67395.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592998|gb|EFR71843.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313595276|gb|EFR74121.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597723|gb|EFR76568.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313642572|gb|EFS07152.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644383|gb|EFS08963.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 234

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +           L      D   ++  L       +
Sbjct: 4   ILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPT--MDGM 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R      P++ ++        +   + G DD + KP   RE+LAR+ AI+RR+ 
Sbjct: 62  EITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIE 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +        G I          V   +  L  +E  +L Y M  + + + +  
Sbjct: 122 PRKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDT 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   I+  FD A +  +V+ H+S LR+K+ R+      + + R  GY  
Sbjct: 182 LLDRIWN-FDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTIRGFGYKF 229


>gi|330719832|gb|EGG98328.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC2047]
          Length = 227

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 110/220 (50%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++          G SL+     E   +  +    D++ I+  L       +E
Sbjct: 4   LIVEDEPQLQQQLADTLCAKGYSLDRAGDGEEGLYYGNEFNYDIAIIDLGLP--KLDGIE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R +RA+ + +P++ ++   + Q  ++  ++G DD + KP H  E+LAR+ A+ RR   
Sbjct: 62  LIRQLRANDRSMPVLILTARDNWQDKVEGLEAGADDYLAKPFHMEELLARLNALIRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++  + G +++    +    + +   L   E ++LEYLM N  K ++KT++   IY  
Sbjct: 122 KADSTIKIGYLQLDIRTQQVLAREQQVSLTAYEYKVLEYLMLNPQKVISKTELTEHIYAQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + NV+E  I +LRKKL      +P+++ R  GY +
Sbjct: 182 -DYDRDSNVIEVFIGRLRKKLDPDNLHNPIETLRGRGYRL 220


>gi|325126518|gb|ADY85848.1| Two-component response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 228

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  +N  E    L ++    +  ++  +       
Sbjct: 3   ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTRLSTTPDIALMILDVMMPN--MSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR +
Sbjct: 61  IDVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   V+G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 KQVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+ +   G + + +   +GY ++
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGYKVE 227


>gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 241

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +    +     +G  +   ++              +  ++  L        
Sbjct: 11  ILIIDDDVELCSLLLRCLEREGYEVCAAHTGAAGLNRLDEKEAVLVILDVMLPE--MSGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R    +P++ ++   S +  +    +G DD + KP    E +ARV ++ RR  V
Sbjct: 69  AVLSELRKTKSIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLIRRFTV 128

Query: 122 SNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N             G + +    R   VQ +   L  +E  +L +L  N G+   K Q+
Sbjct: 129 LNRENPCKEKSLIFKGGLLINPVERSVSVQEKEIELTNKEFDLLYFLAKNPGQVFTKKQL 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++ I+   D A ++  + ++ISKLR+K+  K      + +   +GY  +
Sbjct: 189 YTQIW-QEDYAFDDGNMMAYISKLRRKIEKKEKETAYIQTIWGVGYRFN 236


>gi|304385704|ref|ZP_07368048.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328208|gb|EFL95430.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 229

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  +N  E    L +     +  ++  +       
Sbjct: 3   ILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPE--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +R  S++P++ +S        +    +G DD V KP +  EI+ARV ++ RR +
Sbjct: 61  MQVVREVRKDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRSE 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +    + GP+ + SD  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 KDVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++   +  +    V  H+S LR K+     G   +++   +GY +
Sbjct: 181 ERVWQQ-ESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYKV 226


>gi|299068876|emb|CBJ40117.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum CMR15]
          Length = 224

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G   +   S     +       D+  ++  L   G    
Sbjct: 3   LLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLP--GMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++ R +R     P++ ++    L   L   + G DD + KP    E++ARV  I RR   
Sbjct: 61  QVIRELRRRKTTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGPM 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E   + + +  R     G    L  +E  +L  L    G+ ++++ I S ++ +
Sbjct: 121 RESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 -NFDSNTNVVDVAIRRLRAKVDDPFEPKLIHTLRGMGYVLD 220


>gi|270160105|ref|ZP_06188761.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           D-4968]
 gi|289165117|ref|YP_003455255.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           NSW150]
 gi|269988444|gb|EEZ94699.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           D-4968]
 gi|288858290|emb|CBJ12158.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           NSW150]
          Length = 226

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D        +G      +  E       +   D   ++  L        
Sbjct: 5   ILIIDDDTELTDLLSQYLEPEGYHAVCVHDGENGVKKALNQPFDAVILDVMLP--KLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR H + P++ ++        +   + G DD + KP + RE++AR+ AI RR + 
Sbjct: 63  EVLKSIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S    E   I V    R   + G    L   E  ILE L+ + G+  +K ++     
Sbjct: 123 IPASKPIIEQHNIVVDCSKRHVTMAGHYLELTNAEFNILEMLIKSPGQAFSKEELTEYAL 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
           G    A +   ++ HIS LR KL +    +P+  + R  GY  +
Sbjct: 183 GRKYTAYD-RSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYMFN 225


>gi|229070198|ref|ZP_04203454.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|228712922|gb|EEL64841.1| Two-component response regulator vanRB [Bacillus cereus F65185]
          Length = 221

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++   +  +  E +    ++    I   ++       
Sbjct: 6   ILVVEDDQEIQELIKQFLMTQHYTVIVAS--DGLEGMTQFNKQSFDLILLDVMMPNLNGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 64  EVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G
Sbjct: 124 KNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E  ++++HI  LRKKL        + + + +GY ID
Sbjct: 184 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKID 220


>gi|192359567|ref|YP_001983303.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190685732|gb|ACE83410.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 220

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  + E     E       + + D+  ++  L       L
Sbjct: 3   ILIVEDEIDLGEILRDYLNAENYTTELVGDGESALARIRNGQWDLIILDLMLP--KLDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  SQVP+I  +        L   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 61  SVCREVRKQSQVPIIMTTAKVEEIDRLLGLEVGADDYICKPFSPREVVARVKAVLRRSQA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +  A+   + +  +      QG+   L   E RILE L A++ K V++  +    Y   
Sbjct: 121 PSG-ADNSILHLDKEAMQVHHQGQSIELTAIEFRILETLFAHKHKVVSRDLLQKNAY-TD 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V +  ++SHI+KLRKKL+     + + S   +GY +
Sbjct: 179 HRVVSDRTMDSHITKLRKKLQQIHPQEIIHSVYGVGYRL 217


>gi|158422761|ref|YP_001524053.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158329650|dbj|BAF87135.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 238

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D     F + G  ++     E         + DV  ++  L  +    L
Sbjct: 15  LLLVEDDQDAADYLRKAFREAGHVVDHAADGEDGLAYALDGKYDVLVVDRMLPRR--DGL 72

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L   +R      P++ +S    +   +    +G DD + KP    E+LARV A+ RR  
Sbjct: 73  SLVAELRGRGDATPVLILSALGQVDDRVVGLRAGGDDYLPKPYAFTELLARVEALSRRGA 132

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +      G + +          G+  PL  RE R+LEYLM + G+ V +T +   ++
Sbjct: 133 PQAAETVYRVGDLELDRLAHRVARGGKEIPLQPREFRLLEYLMRHAGQVVTRTMLLENVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY +
Sbjct: 193 D-YHFDPQTNVIDVHVSRLRSKIDKGFDVPLIHTVRGAGYMV 233


>gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 248

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +  +++   EE ++S  R+    I   ++       
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQV--YSATNGEEAIESFHRDSPDLIVLDVMLPKMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 64  AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 122 SNNRAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           S +  ET            G + V ++ R     G+   L   E  +LE L    GK V 
Sbjct: 124 SISVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVP 183

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|290770180|gb|ADD61939.1| putative protein [uncultured organism]
          Length = 230

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   +E LQ    ++   +   ++  G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAENIEADFCNT--GKEGLQKLREQEYQLVVLDVMMPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMEELIARIASLIRRYTR 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N +           +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 227


>gi|229062506|ref|ZP_04199819.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716789|gb|EEL68480.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 229

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYIV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADISLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKCITTVVRTGYKFEGN 228


>gi|218658341|ref|ZP_03514271.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli IE4771]
          Length = 222

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 90/195 (46%), Gaps = 8/195 (4%)

Query: 32  LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV---PLIGISDYPSLQTTL 88
            +  E        D+  ++  L   G   +E+ R +R   +    P+I ++        +
Sbjct: 30  GDEAEIRLQERTPDLLILDWMLP--GVSGIEICRRLRMRPETERLPIIMLTARGEESERV 87

Query: 89  DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEV 146
               +G DD V KP    E++ARV A+ RR +    ++  + G I +  +      +   
Sbjct: 88  RGLSTGADDYVVKPFSTPELVARVKAMLRRARPEVLSSVLKCGDIELDRETHRVHRKSRE 147

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L   E R+LE+LM++ G+  +++Q+   ++G  D  V+E  V+ H+ +LRK L     
Sbjct: 148 VRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVWG-HDIYVDERTVDVHVGRLRKALNFSNM 206

Query: 207 FDPVDSKRFLGYSID 221
            D + + R  GYS++
Sbjct: 207 QDVIRTVRGAGYSME 221


>gi|184154873|ref|YP_001843213.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260663097|ref|ZP_05863989.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183226217|dbj|BAG26733.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260552289|gb|EEX25340.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 240

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 105/235 (44%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +    +   + + EE ++  ++  +D   +   L    + 
Sbjct: 3   ILMIEDNRSVCEMMSMFFKKE--KWDATFAYDGEEAVEKFAAEADDWEMVLLDLNLPKKD 60

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++   IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR
Sbjct: 61  GMQVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALRRR 120

Query: 119 LKVSNNR-----------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGK 166
           +++S               +T   ++ S  R+  + G +   L  +E  +L+ L +   +
Sbjct: 121 VQLSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKPKQ 180

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 181 VFTREQLLQLVWD-YEFYGDERTVDAHIKKLRQKIE-KVGPKVIQTVWGVGYKFD 233


>gi|167040620|ref|YP_001663605.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300914661|ref|ZP_07131977.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307724105|ref|YP_003903856.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166854860|gb|ABY93269.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300889596|gb|EFK84742.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307581166|gb|ADN54565.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 234

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G  +    + +         + D+  ++  L       LE
Sbjct: 6   LVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDV--DGLE 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +I++ +     +P+I ++        +   + G DD + KP   RE+LAR+ A+ RR 
Sbjct: 64  ICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRT 123

Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  +   E     G I + +       +G+V  L  +E  +L+ L  N GK + +  +  
Sbjct: 124 QQPDEEKEGIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++G ++ A E   V+ HI  LRKK+ +       +++ R +GY ++
Sbjct: 184 KVWG-YEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLN 229


>gi|78045027|ref|YP_359462.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997142|gb|ABB16041.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 226

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++     L   +    +   + + E  ++   RE+   +   L    +   
Sbjct: 4   ILVVEDDQKIQKALAHLLKAENY--DFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + I+    VP+I ++        +  F  GVDD + KP    E++ R+ A+ RR + 
Sbjct: 62  SVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK 121

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                E    G + V    R+    GE   L  +E  +LE L  N  +   K QI   ++
Sbjct: 122 GRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
                  + N+V   + +LR+K+  +      + +   +GY 
Sbjct: 182 -PDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222


>gi|312115043|ref|YP_004012639.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220172|gb|ADP71540.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 224

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 119/221 (53%), Positives = 162/221 (73%), Gaps = 1/221 (0%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++DDR  V +GY A F  +GVS  G    +F +W+ ++   D+ A+EAFL+G  +  
Sbjct: 1   MIVIVDDRETVLNGYAAWFCREGVSATGLAPHDFRQWVNTAPEPDIDAVEAFLLGDFQNR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+P  I++ S   +I +++  SL  TLD F +GVDDVV KP+H REILAR+ AI RR +
Sbjct: 61  EEVPLKIKSRSGAAVIAMNETKSLNDTLDLFAAGVDDVVRKPVHVREILARIRAISRRSQ 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + ++  +G IRVFSDGRDPE+ GE  PLPRRERRILEYLM N+G+RV K+QIF+ +YG
Sbjct: 121 QEAQSQPLSGRIRVFSDGRDPEIDGEPLPLPRRERRILEYLMTNKGRRVTKSQIFNFVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           LFD+ ++ENV+ESHISKLRK+LR +LG DP+DS+RFLGY +
Sbjct: 181 LFDDGIDENVIESHISKLRKRLRQRLGSDPIDSQRFLGYRL 221


>gi|225027370|ref|ZP_03716562.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
 gi|224955313|gb|EEG36522.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
          Length = 225

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 106/225 (47%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED-VSAIEAFLIGKGEKV 60
            +++DD + ++             +    + + EE L    ++  +S I   ++      
Sbjct: 6   IMVVDDESRMRKLVKDFLKKKDFEV--IEAADGEEALDIFFKDKSISLIICDVMMPKING 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ + IR +SQVP+I ++        L+ FD GVD+ ++KP   + ++ARV AI RR  
Sbjct: 64  FDVVKEIRQYSQVPIIMLTAKGEESDELNGFDLGVDEYISKPFSPKILVARVEAILRRSN 123

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    + G I +     +  + G+   L  +E  +L Y + N+G  +++ +I + ++
Sbjct: 124 NLSTGEVLKAGGIELDIAAHEVRIDGKEITLSFKEFELLNYFVVNQGVALSREKILNNVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +D   +   +++H+ KLR KL  K   + + +   +GY  + +
Sbjct: 184 N-YDYFGDARTIDTHVKKLRSKLGEKG--EYIKTIWGMGYKFEVD 225


>gi|145294164|ref|YP_001136985.1| hypothetical protein cgR_0122 [Corynebacterium glutamicum R]
 gi|57157979|dbj|BAD83953.1| two-component system response regulator [Corynebacterium
           glutamicum]
 gi|140844084|dbj|BAF53083.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 240

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPE--LDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSVRELVTRVHAVLRRPRTS 133

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 237


>gi|330875757|gb|EGH09906.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965575|gb|EGH65835.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 222

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 101/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++         +  +S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLP--GMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R +    P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRGNGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGADIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+KL    G   ++++R  GY
Sbjct: 181 DGENE-RDSNVIEVHVNHLRRKL----GRAVIETRRGQGY 215


>gi|326789756|ref|YP_004307577.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540520|gb|ADZ82379.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 217

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G         +   +       D+  ++  L        
Sbjct: 4   ILIVEDEVAINDLVKLNLHLVGHQCTSVFEGKSAIFAIQRESYDLIILDIMLPE--LDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   I+  +Q P I ++   SLQ+ +  F  G DD + KP    E+LARV AI RR + 
Sbjct: 62  EV---IKQVNQTPTIFLTAKNSLQSRIQGFSLGADDYITKPFEMLELLARVEAILRRTQK 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++   E   +++  D       G++     +E  +LE L+ NR   +++ ++   ++G +
Sbjct: 119 ASKYFEIRNVKIDFDSHQVFYNGQLVDFTPKEYNLLEVLINNRNIALSRERLLELVWG-Y 177

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D   +   V+ HI KLRKKL  +     + +   LGY ++ 
Sbjct: 178 DFEGDTRTVDVHIQKLRKKLSWEG---VIKTVYKLGYRLEV 215


>gi|295696527|ref|YP_003589765.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412129|gb|ADG06621.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 228

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 7/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M +L+DD   V D        +G  +    +      +    + D+  ++  L       
Sbjct: 4   MLLLVDDEPRVLDVMATFLQGEGFRIVTAQTGREALEVFQKHQPDLVVLDWMLPE--MSG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R    V +I ++        +   + G DD + KP   RE+ AR+ ++ RR +
Sbjct: 62  LDVCRELRRMGSVGIIMVTARTEEADKIVGLEVGADDYITKPFSLRELAARIRSVLRRTQ 121

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +       G + +           +   L   E +IL  L +  G   ++ Q+  + 
Sbjct: 122 GGGDEPSVLRRGDLTIDETKFRVWKGDQEIVLTPTEFKILVTLASRPGTVYSRLQLLQSA 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G       E  V++H+S LRKK+  +      + +   +GY  
Sbjct: 182 LGET-YLNYERTVDTHVSHLRKKIEDDPAEPRYIQTVYGVGYRF 224


>gi|126701227|ref|YP_001090124.1| two-component response regulator [Clostridium difficile 630]
 gi|254977229|ref|ZP_05273701.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094558|ref|ZP_05324036.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102817|ref|ZP_05331794.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255316313|ref|ZP_05357896.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518973|ref|ZP_05386649.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255652153|ref|ZP_05399055.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260685121|ref|YP_003216406.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688779|ref|YP_003219913.1| two-component response regulator [Clostridium difficile R20291]
 gi|115252664|emb|CAJ70507.1| Two-component response regulator, CheY family [Clostridium
           difficile]
 gi|260211284|emb|CBA66849.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214796|emb|CBE07526.1| two-component response regulator [Clostridium difficile R20291]
          Length = 230

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       + G ++    + + +E L    +E++  +   ++      +E
Sbjct: 6   LVVDDEKEIRDLIEIYLLNSGYNV--IKAEDGKEALDILKKENIHLMILDIMMPKMDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +R    +P++ +S        +    +G DD + KP +  E+  RV ++ RR    
Sbjct: 64  VCRKVRESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  + G + +  +     V G    L  RE  IL  L  N+G+  +  +IF 
Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++         N V  H+S++R K+     G   + +   +GY I+
Sbjct: 184 KVWKEK-YYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIE 229


>gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 233

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V++        +G ++    + +  + L+   RE    +   ++      LE
Sbjct: 4   LVVDDEPAVRESLRRSLTFNGYNV--VTAEDGVQALEVIEREHPEIVILDVMMPRMDGLE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+      ++ ++   ++   +   D+G DD + KP    E+LARV ++ RR  V
Sbjct: 62  VCRTLRSQGDDRSILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLVRRSAV 121

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +N             G + +  + RD         L R E  +LE LM N  K + +  
Sbjct: 122 ESNNNAASNRQTELTFGDLTLNPETRDVSRAVRPISLTRTEFALLELLMKNPRKVLPRNT 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G +D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 182 ILEEVWG-YDFPTSGNALEVYIGYLRRKTEQEGESRVIYTVRGVGYVL 228


>gi|289705109|ref|ZP_06501513.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558137|gb|EFD51424.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 226

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 83/220 (37%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  +DG                   R D+  ++  L   G   +
Sbjct: 6   ILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRERPDLVLLDLMLP--GIDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IR  S VP++ ++        +   +SG DD V KP    E++ARV A  R  + 
Sbjct: 64  EVCRLIRDESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +   G      G    L   E  +L  L         +  +   ++G 
Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRAGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             +A +  +V  H+ +LR K+        V  + R +GY 
Sbjct: 184 RHQA-DTRLVNVHVQRLRSKVEPDPENPCVVLTVRGVGYK 222


>gi|266623167|ref|ZP_06116102.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288865034|gb|EFC97332.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++ + +  F S E       S   D++ ++  L       L
Sbjct: 5   ILIVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPD--ISGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR+     P+I ++        +     G DD + KP    E++ARV A  RR K
Sbjct: 63  SICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYK 122

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     +N   +   + +     +  + GE   L   E  IL  L+  R   V+  
Sbjct: 123 KYNVGAVVPAANEIFKYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++F  ++         N +  HI  LR+K+++       + +   +GY I
Sbjct: 183 ELFHEVWQEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKI 232


>gi|256371502|ref|YP_003109326.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008086|gb|ACU53653.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 236

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 94/224 (41%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G +++  +       +   A  D   ++  L   G    
Sbjct: 3   LLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLP--GVNGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +  +++R      P++ ++         +  D+G DDV+ KP     ++AR+ A+ RR +
Sbjct: 61  KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      + G + +               L  RE   LE L+ N+G  + K  I + ++ 
Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   + N+VE +I  LRKK+    G   + + R +GY ++ +
Sbjct: 181 -YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEED 223


>gi|152994266|ref|YP_001339101.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835190|gb|ABR69166.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 221

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   + +       DDG +++   SL F E    +   D+  ++  L        +
Sbjct: 4   LLIEDTTGLGEAVRDQICDDGHAVDWVQSLNFAEASVQATSYDLVLLDLMLPD--GNGFD 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             + +R      P+I ++    +   ++  ++G DD + KP    E+ ARV A+ RR + 
Sbjct: 62  FLKSLRKSGNSTPVIILTARDQVSDRIEGLNAGADDYLIKPFDLSELSARVGAVARRYRG 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N   + G + +       +  G    L  RE  + E L+   G  ++++Q+   +Y  
Sbjct: 122 DPNPLVKLGHLEIDLGEHRIKANGLPVELTAREWALFEGLVQRPGTLLSRSQLEDRLY-Q 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           F   +E N +E +IS+LRKKL    G D + + R +GY ++
Sbjct: 181 FGAEIESNTIEVYISRLRKKL----GRDVIITVRNMGYRLE 217


>gi|227514441|ref|ZP_03944490.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087191|gb|EEI22503.1| response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 250

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 105/235 (44%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +    +   + + EE ++  ++  +D   +   L    + 
Sbjct: 13  ILMIEDNRSVCEMMSMFFKKE--KWDATFAYDGEEAVEKFAAEADDWEMVLLDLNLPKKD 70

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++   IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR
Sbjct: 71  GMQVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALRRR 130

Query: 119 LKVSNNR-----------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGK 166
           +++S               +T   ++ S  R+  + G +   L  +E  +L+ L +   +
Sbjct: 131 VQLSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKPKQ 190

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 191 VFTREQLLQLVWD-YEFYGDERTVDAHIKKLRQKIE-KVGPKVIQTVWGVGYKFD 243


>gi|225352770|ref|ZP_03743793.1| hypothetical protein BIFPSEUDO_04400 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156377|gb|EEG69946.1| hypothetical protein BIFPSEUDO_04400 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 244

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 100/235 (42%), Gaps = 22/235 (9%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK 56
           + +++DD   + +    +   +G      L+G+ ++E    LQ     D+  ++  L   
Sbjct: 12  LIMIVDDDQALGEMLSIVLESEGFKTVTCLDGWRAVEMFPTLQ----PDLMLLDVMLP-- 65

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           G   +++ + IR +S  P+I ++        +   ++G DD V+KP    E++AR+ A  
Sbjct: 66  GLDGVQVAQRIRQNSNTPIIMLTAKSDTTDVVKGLEAGADDYVSKPFEVVELMARIRARL 125

Query: 117 RRLKVSN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           R  KV+            R + G + +          G    L   E  +L  L A+ G+
Sbjct: 126 RMPKVNAPAGKDEGDLTERLQCGTLVMDRAEHTATKDGVDLQLTPTEFELLYVLAAHAGE 185

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
            +++  +   ++G ++   +  +V  H+ +LR K+        +  + R +GY  
Sbjct: 186 ALSRANLLKRVWG-YESGGDTRLVNVHVQRLRMKVETDPENPRIVQTVRGIGYKF 239


>gi|222529476|ref|YP_002573358.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456323|gb|ACM60585.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 232

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +   F +      L+      V  +   ++   +   
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYN--TFEADSGILALEILKHNKVDLVILDIMMSDKDGY 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + IR       +P+I +S        +   + G DD + KP   +E++ RV A+ RR
Sbjct: 62  EVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121

Query: 119 LKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++      E     G I V    R  +   +   L  +E  +L+ L+ NRG+ + +  I 
Sbjct: 122 VESLRPEVEDKVKFGDIEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENRGRVLDRDFIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G ++   +   V+ HI  LR+KL +       +++ R +GY  +
Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFN 228


>gi|169795463|ref|YP_001713256.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AYE]
 gi|260549449|ref|ZP_05823668.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624]
 gi|332855218|ref|ZP_08435769.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
 gi|169148390|emb|CAM86255.1| putative Two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AYE]
 gi|260407558|gb|EEX01032.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624]
 gi|332727595|gb|EGJ59017.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
          Length = 228

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L     +  
Sbjct: 8   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPD--IEGW 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 66  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 126 LQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNI 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 186 -NFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKI 224


>gi|322832102|ref|YP_004212129.1| two component heavy metal response transcriptional regulator,
           winged helix family [Rahnella sp. Y9602]
 gi|321167303|gb|ADW73002.1| two component heavy metal response transcriptional regulator,
           winged helix family [Rahnella sp. Y9602]
          Length = 224

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G S++   +     +L      D   ++  L   G    
Sbjct: 3   ILVIEDDVSTGDYLKKGLTEAGYSVDLARNGADGLFLALEEGYDAVILDVMLP--GLNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++  ++R  S VP++ ++    +Q  +   + G DD + KP    E++ R+  + RR   
Sbjct: 61  QVMEVLRKKSDVPVLFLTARDEVQDRIHGLELGADDYLIKPFSFTELVLRIRTLLRRPAA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R    Q +   L  +E  +L+ LM   G+ +++T I S ++ +
Sbjct: 121 REPDAYSVADLNLDVLRRRVTRQDQTIALTNKEFMLLQLLMRREGEVLSRTMIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+        + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDRSFEVKLIHTVRGIGYVCEV 221


>gi|304391092|ref|ZP_07373044.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315656132|ref|ZP_07909023.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304325975|gb|EFL93221.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315493134|gb|EFU82734.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 246

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +              +  + +      +   +   L+  G   +
Sbjct: 24  ILVVDDDQALSEMIGIILESSAYEPSF--CADGAKAVDKFREVEPDLLLLDLMLPGMDGI 81

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        +   ++G DD + KP   +E+LARVAA  R L  
Sbjct: 82  EICRRIREFSNVPIIMLTAKSDTTDVVAGLEAGADDYIPKPFKPKELLARVAARLRNLDA 141

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  +  +   + +     +    G+   L   E  +L  L    G+  ++ ++   ++GL
Sbjct: 142 AEHDVLKAAGVEINLASHEVSRGGKPLNLTPLEYDLLVALATKPGRVFSREELLEQVWGL 201

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              A +  +V  H+ +LR K+  +      V + R +GY I
Sbjct: 202 R-HASDTRLVNVHVQRLRAKVELDPDNPTVVLTVRGVGYRI 241


>gi|222085319|ref|YP_002543849.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722767|gb|ACM25923.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 252

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ +    DV+ I+  L  +    L
Sbjct: 30  ILIIEDDLEAAAYLTKAFREAGIVADHASDGESGLFMGTENAYDVAIIDRMLPRR--DGL 87

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 88  SVISELRRKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 147

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 148 TPDQDVLYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 207

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 208 D-YHFDPQTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 248


>gi|42781025|ref|NP_978272.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42736946|gb|AAS40880.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 232

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+   + ++      ++      +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKV--FSAHNGEEALEIINKNNIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N         +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIKKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231


>gi|16767542|ref|NP_463157.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|161617435|ref|YP_001591400.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167991502|ref|ZP_02572601.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231307|ref|ZP_02656365.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237001|ref|ZP_02662059.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168243710|ref|ZP_02668642.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168263368|ref|ZP_02685341.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466994|ref|ZP_02700842.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168821248|ref|ZP_02833248.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194446648|ref|YP_002043542.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451690|ref|YP_002048283.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194469502|ref|ZP_03075486.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734993|ref|YP_002117227.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250754|ref|YP_002149207.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262661|ref|ZP_03162735.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|198245395|ref|YP_002218184.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387181|ref|ZP_03213793.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205355063|ref|YP_002228864.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859446|ref|YP_002246097.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224586057|ref|YP_002639856.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238912749|ref|ZP_04656586.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16422853|gb|AAL23116.1| response regulator in two-component regulatory system with BasS
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56540683|gb|AAV92795.1| PmrA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|161366799|gb|ABX70567.1| hypothetical protein SPAB_05292 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405311|gb|ACF65533.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194409994|gb|ACF70213.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194455866|gb|EDX44705.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710495|gb|ACF89716.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195630642|gb|EDX49254.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197214457|gb|ACH51854.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197240916|gb|EDY23536.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290033|gb|EDY29392.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197939911|gb|ACH77244.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199604279|gb|EDZ02824.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205274844|emb|CAR39904.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205330124|gb|EDZ16888.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334263|gb|EDZ21027.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205337324|gb|EDZ24088.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205342091|gb|EDZ28855.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205347889|gb|EDZ34520.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711249|emb|CAR35625.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470585|gb|ACN48415.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261249390|emb|CBG27254.1| Two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996618|gb|ACY91503.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160784|emb|CBW20315.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915397|dbj|BAJ39371.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088702|emb|CBY98460.1| Phosphate regulon transcriptional regulatory protein phoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223164|gb|EFX48234.1| Transcriptional regulatory protein basR/pmrA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|326625984|gb|EGE32329.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326630216|gb|EGE36559.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332991107|gb|AEF10090.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 222

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +          G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115]
 gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 225

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A V+         +G  +E     E           D+  ++  L   G   L
Sbjct: 5   ILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAVRDRPPDLVILDVMLP--GLDGL 62

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+  R+ R  + +P++ ++        +   + G DD V KP     + ARV A  RR +
Sbjct: 63  EVLSRLRRVDANLPVVMLTARDRPDEQVRGLERGADDYVTKPFSFDVLAARVRAQLRRRE 122

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G + +   G      G    L  +E R+L+  M    +  +K+ +    +G
Sbjct: 123 TDAPAVLRFGNLTLDPAGHSVSRDGREITLTAQEFRLLQAFMEQPERVQSKSVLLDRAWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L     + NVVE+++ +LR+KL        + + R +GY +
Sbjct: 183 LG-YLGDPNVVETYVKQLRQKLEGDGQTRLIHTIRGVGYVL 222


>gi|167769639|ref|ZP_02441692.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
 gi|167668000|gb|EDS12130.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   +E LQ    ++   +   ++  G    
Sbjct: 4   ILIIDDDRELCALIKRSVQTEHIEADFCNT--GKEGLQKLKEQEYQLVVLDVMMPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N++       +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 227


>gi|148379930|ref|YP_001254471.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931088|ref|YP_001384228.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937795|ref|YP_001387768.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289414|emb|CAL83510.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927132|gb|ABS32632.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933709|gb|ABS39208.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 221

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLP--KIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +  IIR  S +P+I ++     +  +  F+  VDD + KP     ++ RV A+ RR   
Sbjct: 63  VVCEIIRKESSMPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +  V+++HI  LR+KL      D + + R +GY I+
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIE 220


>gi|148238512|ref|YP_001223899.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147847051|emb|CAK22602.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 269

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+   +      G  +      E    + S    D+  ++  L        
Sbjct: 26  LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEQALEVFSRESPDLVVLDVMLP--KLDGF 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+  
Sbjct: 84  AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGR 143

Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  AE             G + V ++ R      E   L   E  +LE L    G+ V 
Sbjct: 144 GSANAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVP 203

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GYS
Sbjct: 204 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYS 255


>gi|261346014|ref|ZP_05973658.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM
           4541]
 gi|282565899|gb|EFB71434.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM
           4541]
          Length = 224

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 104/224 (46%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++        D    ++     +  ++  + +  D++ ++  L    E  L
Sbjct: 3   ILIVEDNALLRHHLTVQLKDLSHQVDSAEDAKEADYFLNESHPDIAVVDLGLPD--EDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +  R+ H  +P++ ++   S Q  +   +SG DD V KP    E++AR+ A+ RR  
Sbjct: 61  SMIKRWRSNHVTIPILVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E     +    ++  V GE   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKK++     + + + R  GY  D N
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQFHEQEVIVTVRGQGYRFDVN 223


>gi|297585393|ref|YP_003701173.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297143850|gb|ADI00608.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 229

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G         E    L      D+  ++  +   G   L
Sbjct: 4   IMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMP--GMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR+   +P+I +S   S    +  F+ G DD + KP    E+ AR+ A  R   +
Sbjct: 62  EVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYAM 121

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    +   G + +  +    EV+GE   L  +E ++L +   +  +     Q++  I
Sbjct: 122 NPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDRI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + L D       V+ HIS LR+K+       + + + R  GY  
Sbjct: 182 WNL-DATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRF 224


>gi|170729101|ref|YP_001763127.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169814448|gb|ACA89032.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 225

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   +  +  F + G ++E  +       L +S + D+  ++  L       L
Sbjct: 3   ILLVEDDATTIEYVVKGFTEQGHNIETASDGHQGLLLATSMKYDLILLDRMLPQ--LDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R  
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGL 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +      G + +    R   + G    L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SQPAETGLTVGNLVMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221


>gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 269

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +      +         R D   ++  L       L 
Sbjct: 46  LVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPD--MDGLT 103

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 163

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R++     G + +  D  +    GE   L   E  +L +LM N  + ++K QI   +
Sbjct: 164 ADRRSDSMLVVGDLTLDEDSHEVSRSGENIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 224 W-SYDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 264


>gi|30022879|ref|NP_834510.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229130093|ref|ZP_04259054.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|29898438|gb|AAP11711.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228653308|gb|EEL09185.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 229

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|26249400|ref|NP_755440.1| putative response regulator [Escherichia coli CFT073]
 gi|26109808|gb|AAN82013.1|AE016766_101 Putative response regulator [Escherichia coli CFT073]
          Length = 240

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 8   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNV--NGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 66  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 125

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +        + +    R+  +  +   L  RE  +L +   + G+  ++  +
Sbjct: 126 AMGQNILLAGGLICCHDLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 186 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 232


>gi|307329229|ref|ZP_07608394.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885128|gb|EFN16149.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 236

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 26/237 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-----AREDVSAIEAFLIGK 56
            +L++D   V     A+    G  +    S   EE LQ+      A   V  ++  L  +
Sbjct: 3   LLLVEDDNHVAAALSAILSRHGFEVTHARS--GEEALQALLPDSGAPFGVVLLDLGLPDQ 60

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ 
Sbjct: 61  --DGFEVCGKIRKRTATPVIMVTARADVRSRIHGLNLGADDYVVKPYDTMELLARIHAVS 118

Query: 117 RRLKVSNN-------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
           RR    +                  GP+ +    R   V G    L R+E  +L  L   
Sbjct: 119 RRTAPQDTGHGADEGPDGPHPPLRLGPVTIELPTRQVSVNGTTVSLTRKEFDLLALLAQR 178

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G    + QI S ++    E      +E H++ LR KLR       +++ R +GY +
Sbjct: 179 PGVVFRREQIISEVWRTSWEGTG-RTLEVHVASLRSKLRMPA---LIETVRGVGYRL 231


>gi|152973508|ref|YP_001338559.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|329999903|ref|ZP_08303567.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
 gi|150958300|gb|ABR80329.1| probable transcriptional regulatory protein(silver resistance)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|328538154|gb|EGF64312.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
          Length = 227

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 103/223 (46%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 4   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDV--NGW 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 62  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  + +LR K+ N  G   + + R +GY ++
Sbjct: 182 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLE 223


>gi|301017928|ref|ZP_07182553.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300399923|gb|EFJ83461.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
          Length = 239

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNV--NGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 65  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 124

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +        + +    R+  +  +   L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNILLAGGLICCHDLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|261492521|ref|ZP_05989074.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496796|ref|ZP_05993170.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307543|gb|EEY08872.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311680|gb|EEY12830.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 228

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 97/227 (42%), Gaps = 17/227 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            ++++D   +++               +  +E E++  +      + ++  ++  +   G
Sbjct: 5   ILIVEDERAIREMLSLYLSKQ------YQVIEAEDYQSAINKLGEKPELILLDWMMP--G 56

Query: 58  EKVLELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              + L + ++   +    P+I ++   S +  +   ++G DD + KP   + +LAR+ A
Sbjct: 57  RSGIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEA 116

Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++RR     +N      + +    +   V  +   L   E ++L +L+ +  K   + Q+
Sbjct: 117 VWRRSYDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLLHFLITHPEKVYRREQL 176

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G  D  VE+  V+S+I +LRK L        + + R  GY  
Sbjct: 177 LDFIWGN-DIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGSGYRF 222


>gi|260687106|ref|YP_003218240.1| two-component response regulator [Clostridium difficile R20291]
 gi|260213123|emb|CBE04540.1| two-component response regulator [Clostridium difficile R20291]
          Length = 247

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   +E LQ    ++   +   ++  G    
Sbjct: 21  ILIIDDDKELCALIKRSVQAENIEADFCNT--GKEGLQKLREQEYQLVVLDVMMPGMDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 79  ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 138

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N +           +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 139 FNQQAGAIQKLNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 198

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 199 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 244


>gi|149909235|ref|ZP_01897892.1| DNA-binding response regulator BaeR [Moritella sp. PE36]
 gi|149807759|gb|EDM67705.1| DNA-binding response regulator BaeR [Moritella sp. PE36]
          Length = 230

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +            +     +       L  +   D+  ++  L   G+  + 
Sbjct: 5   LIVEDEVKIAQLLTDYLVQSNLETVMVHDGNAVLELVHNQYFDIILLDLMLP--GKDGIT 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +  
Sbjct: 63  LCKEIRQFSAVPIIMVTARVDEIDRLIGLELGADDYICKPFSPREVVARVKAVLRRTQSQ 122

Query: 123 NNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +           + +  +     V G    L   E  +L+ L    G+  +++Q+ 
Sbjct: 123 TQSLDKSDTIKSTPKVVELDPEKYQARVFGIPVELTAIEFNLLQILAKEPGRIYSRSQLM 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           + +Y      V E  ++SHI KLRKKL + K   + V S   +GY ++
Sbjct: 183 NHVY-HDHRVVSERTIDSHIKKLRKKLNDIKPDMELVQSVYSVGYKLE 229


>gi|121602059|ref|YP_988753.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
 gi|120614236|gb|ABM44837.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
          Length = 228

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G + +     +    L  + R DV  I+  L  +    L
Sbjct: 3   ILIIEDDRETGRYLEKAFLEAGHAADIACDGDTGYALAETERYDVMIIDRMLPHR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SIISELRAKGNETPVLILSALGQVDDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       +       L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGDLELDRLSHTVKRGEMNITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDIPLLHTVRGAGYML 221


>gi|257091795|ref|YP_003165436.1| winged helix family two component heavy metal response
           transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044319|gb|ACV33507.1| two component heavy metal response transcriptional regulator,
           winged helix family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 227

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++     E       +   D+  ++  L   G    
Sbjct: 3   ILVVEDEPKTGNYLKQGLLEAGFVVDLARDGEDGMHCALTEAYDLVILDVMLP--GIDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR     +P++ ++    +   +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  SVLRGIRKSGKDMPVLFLTARDHVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGG 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    R     G+   L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 KATESEFLRAADLELDLMRRRVNRSGKRIDLTAKEFALLELLLRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKMDDGFEPKLIRTVRGMGYVLEV 223


>gi|291458570|ref|ZP_06597960.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419103|gb|EFE92822.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 233

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G S++     +  + L  + +ED + +   L+  G+   
Sbjct: 7   ILIVEDEEAIAELERDYLELSGFSVD--LESDGGKGLARALKEDYALLILDLMLPGKDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+   +R    +P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 65  EICGEVRERKDIPIILVSARKDDIDKIRGLGLGADDYMTKPFSASELVARVKAHLARYER 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +      E   I++ S  R   V G+  P   RE  +L +L ++     +K ++F
Sbjct: 125 LLGSSRTEIPILEIRGIKIDSTARRVFVNGKEVPFTAREFDLLYFLASHPNHVYSKEELF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220
             I+ + D   +   V  HI KLR+K+   N      +++   +GY  
Sbjct: 185 KEIWKM-DSVGDIATVTVHIKKLREKIEIDNLSKPQYIETIWGVGYRF 231


>gi|292488737|ref|YP_003531624.1| putative transcriptional regulator Ycf27 [Erwinia amylovora
           CFBP1430]
 gi|292899893|ref|YP_003539262.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291199741|emb|CBJ46861.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291554171|emb|CBA21385.1| probable transcriptional regulator ycf27 [Erwinia amylovora
           CFBP1430]
          Length = 235

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 7/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + ++++D   +    I                 E  +W++  A  D+  ++  L      
Sbjct: 9   LILIVEDEPKLGQLMIDYLQAANYRTHHLLRGDEVVDWVKQHA-PDMVLLDLMLPA--MD 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
            L + R +R  S++P++ ++        L   + G DD + KP   RE++ARV  I +R 
Sbjct: 66  GLSVCRELRRFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKTILKRC 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+       P+ +           +   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 126 RRVTEETLTISPLLIDERRFQASWGEKPLDLTPAEFRLLKTLAQQPGKVFSREQLLNHLY 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +     P + +   +GY  + +
Sbjct: 186 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQPFIRAVYGIGYRWEAD 230


>gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 223

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +   +             D+  ++  L       L
Sbjct: 4   ILIIEDEKKIARVLQLELEHEGYETDAAFTGTSGLEKFKENHWDLVLLDVMLPE--LSGL 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IRA  +  P+I ++   S+   +   D G +D V KP    E+LARV A  R ++
Sbjct: 62  EVLRRIRATDTSTPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLRTVQ 121

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +          +V    R+     E   L  +E  +L Y + N+G+ + + QI + 
Sbjct: 122 SGTEKNAGVLTVNDWKVNEKTREVSRGDEHVDLTPKEFDLLVYFIENKGQALNREQILNR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + N+V+ ++  LRKKL      + + + R +GY +
Sbjct: 182 VWG-FDYYGDTNIVDVYVRHLRKKLD---LSEVLVTLRGVGYRL 221


>gi|317132097|ref|YP_004091411.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470076|gb|ADU26680.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 228

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G   +     + ++  Q +     +A+   L+  G+   
Sbjct: 4   ILIVEDDENIAELERDYLKLNGYRADI--EPDGQKACQKALGGGYAALIIDLMLPGKNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R +R+  +VP+I +S        +   D G DD + KP    E++ARV +  RR   
Sbjct: 62  DIIRDVRSTQEVPIIVVSAKAEDIDKIRGLDVGADDYLTKPFSPAELIARVQSHIRRYER 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K          + +    R   V G    L  +E  +L +L +N      K  +F 
Sbjct: 122 LKGNKTQEEILSFRGLEIHHAARRVTVSGREVQLTAKEYDLLYFLASNPNIVFTKEHLFD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G+ D+  +   V  HI ++RKK+  +    D +++    GY  
Sbjct: 182 TIWGV-DDYGDLATVPVHIQRIRKKIEKDPSNPDYIETLWGTGYRF 226


>gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 239

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 13/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D         G  +    +      L  +AR D+  ++  L        E
Sbjct: 8   LVVDDEPNIVDLLRMALRFHGFDVLTATTGRAALELAVAARPDLMILDVMLPD--IDGFE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R +RA    VP++ +S   + +  +     G DD V KP    E+LARV A+ RR   
Sbjct: 66  ICRRLRADGHPVPVVYLSARNAHRDKIAGLTYGGDDYVTKPFAVDELLARVRAVLRRTSP 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +      + +  D       GE   L   E  +L Y + N  + +++TQI
Sbjct: 126 PPAEPAPAPPSPLRFADVELDPDAHLVRRAGEPIDLSPTEFSLLRYFLTNPNRVLSRTQI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             A++  +D   E  +V+ ++S LR+KL    G   + ++R  GY +
Sbjct: 186 LDAVW-SYDYGGESTIVDQYVSYLRRKLGRH-GPSLIHTQRGFGYVL 230


>gi|304406412|ref|ZP_07388068.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344470|gb|EFM10308.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 227

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 96/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +      E       + R D++ ++  +        
Sbjct: 4   ILVVDDDPNIRELSSVFLRREGYEILQATDGEDALRQLEAVRPDMAIMDIMMPR--MDGW 61

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L   +R      +PL+ ++        +  F+ G DD + KP    E++ RV A+ +R 
Sbjct: 62  ALCEALRDSYGQDMPLLMLTAKGETSHKVRAFELGADDYLVKPFDPLELVVRVKALLKRY 121

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K V+++  E G I +     D  +      LP +E  +L  + +   K  A+ Q+   ++
Sbjct: 122 KIVASHTVEVGCISLSKTDYDVTMPEGRVKLPPKEFELLFKMASYPNKTFAREQLIEQLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D   +E  V+ H+ +LR++   +     + + R LGY ++ 
Sbjct: 182 GV-DYEGDERTVDVHVKRLRERFPEQTSGFRIVTIRGLGYRLEV 224


>gi|188589285|ref|YP_001922199.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|188499566|gb|ACD52702.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
          Length = 236

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 93/231 (40%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        +G       +   EE L     ++V  +   ++      ++
Sbjct: 8   LIVDDEKEIRDLVEIYLKSEGY--LTVKACNGEEALNMIREQNVDLVILDVMMPKLNGID 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR   ++P+I +S        +   + G DD + KP +  E++ARV +  RR    
Sbjct: 66  TCLKIREEREMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYKF 125

Query: 123 NNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           N +            E   + +  +  +  +   +  L   E  IL  L  NRGK  +  
Sbjct: 126 NTKHMEDEKEEENIIEIDELTINLETHEVILNNNLVKLTPTEFDILLLLAKNRGKVFSIE 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+ +++   +    +N V  HI K+R+K+  +      + +   +GY I+
Sbjct: 186 NIYESVWNQ-EFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIE 235


>gi|227821352|ref|YP_002825322.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227340351|gb|ACP24569.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
          Length = 223

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIIEDDVNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAIILDIGLPE--MDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
                 RA  +  P++ ++        +   D+G DD V KP H +E+LAR+ A+ RR  
Sbjct: 61  TALERWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVQEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ + G    V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVGGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKK+    G D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKI----GNDLIETVRGLGYRM 216


>gi|254472679|ref|ZP_05086078.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211958143|gb|EEA93344.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 225

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 101/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  ++            ++   DV  ++      G   L
Sbjct: 3   ILLLEDDIEIGTWVEDGLSKAGHVIDWVKDGHDAFLNATTREYDVIVLDRMTP--GLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R+ +  VP++ ++   S++  ++  D+G DD + KP    E+LARV+A+ RR  
Sbjct: 61  SVLKALRSTNNSVPVLFLTALGSVEDRVEGLDAGGDDYLPKPFAFSELLARVSALGRRPS 120

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++       E    ++    +     G+  PL  +E R+ E  + N+G+ + K  +   
Sbjct: 121 TNSGETTSCLEVEKFQLNLLKQQCTRAGQPVPLNAKEFRLFETFIRNKGRVLTKNMLLEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +     +VVE+HIS+LR K+      + + + R  GY +D
Sbjct: 181 VWDM-NFDPTSSVVETHISRLRSKIEKPFDIELIRTIRGAGYILD 224


>gi|197284770|ref|YP_002150642.1| DNA-binding transcriptional regulator PhoP [Proteus mirabilis
           HI4320]
 gi|227357776|ref|ZP_03842125.1| two-component response regulator [Proteus mirabilis ATCC 29906]
 gi|194682257|emb|CAR41989.1| two-component response regulator [Proteus mirabilis HI4320]
 gi|227162105|gb|EEI47119.1| two-component response regulator [Proteus mirabilis ATCC 29906]
          Length = 224

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L++      F D G  ++     +  +   + +  DV+ ++  L    E  +
Sbjct: 3   ILIIEDNILLRHHLSVQFRDAGHQVDAAQDAKEADHFIAESTPDVAIVDLGLPD--EDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R ++  +P++ ++   S Q  +   ++G DD V KP H  EI+ARV A+ RR +
Sbjct: 61  SLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMRRNM 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    ++  + GE   L   E  ILE LM N+ K V+K  +   +Y 
Sbjct: 121 GIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK+  K   D + + R  GY  D
Sbjct: 180 PDAEQRESHTIDVLMGRLRKKILQKYDNDVIVTVRGQGYRFD 221


>gi|53803482|ref|YP_114746.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757243|gb|AAU91534.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 228

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D            G++G  ++  +S E  E         +  ++  L   G+  L
Sbjct: 3   ILLVEDDRKAAGLLTRGLGEEGFRVDTAHSAEDTEQKNLHTGYGLIILDWNLP--GKDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                +R    + P++ ++   +L   +   D+G DD + KP    E+LARV A+ RR +
Sbjct: 61  TFCEELRKREIRTPVLMLTARDALTDRVRGLDTGADDYLTKPFAFEELLARVRALLRRAE 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + +    R     G    L  +E  ILE L+   G+ V++TQ+   I+ 
Sbjct: 121 QARPAMLSVADLVLDPRSRRVTRSGRPLSLTPKEYAILELLLRRAGEVVSRTQLAEEIWR 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               A++ N+++ HIS LR+K+        + + R  G+S+
Sbjct: 181 TGLIALD-NLIDVHISNLRRKVDPPGVPPLIRTVRGCGFSL 220


>gi|331268818|ref|YP_004395310.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125368|gb|AEB75313.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 232

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G+ +  + + +  + L     E++  I   ++      +
Sbjct: 6   ILVVDDDKEIREAIKIYLKNEGLKV--YEAQDGIDALMILQEEEIHLILMDIMMPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +    IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 64  KTTFKIREKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVK 123

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K++    + G I +    +   V GE   L   E +ILE+LM + G+  +  QI+ 
Sbjct: 124 FSNYKINKEELKVGGIILNKIAKRVTVDGEEIRLTPIEYKILEFLMESIGQVFSIEQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 184 NVWNEPCYNAE-NTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKI 228


>gi|167552258|ref|ZP_02346011.1| DNA-binding response regulator [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205323070|gb|EDZ10909.1| DNA-binding response regulator [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 222

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILTAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +          G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|163814967|ref|ZP_02206354.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
 gi|158449650|gb|EDP26645.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
          Length = 229

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 19/231 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   + +        +   +E    G N LE       S    +  ++  L    
Sbjct: 4   ILIIEDELSIAELERDYLELNDFEVEIEPNGINGLEKAL----SEEYSLILLDLMLPD-- 57

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+ R IR    +P+I ++   +    +     GVDD V KP    E++ARV A   
Sbjct: 58  MDGFEICRQIREKKDIPIIMVTAKKNDIDKIRGLGLGVDDYVTKPFSPSELVARVKAHIS 117

Query: 118 RLKV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R +         N+  E   +++    R   V  E      +E  IL +L +N  K  +K
Sbjct: 118 RYERLVGSTALKNDVIEIRGLKIDKTDRRVYVDNEEKVFTNKEFDILCFLASNPNKVFSK 177

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++FS I+ + D   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 178 DELFSKIWNM-DSIGDIATVTVHIKKIREKIEFDTSNPQYIETVWGVGYRF 227


>gi|118479940|ref|YP_897091.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043892|ref|ZP_03111129.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866817|ref|YP_002752195.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228948563|ref|ZP_04110842.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229187082|ref|ZP_04314231.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|118419165|gb|ABK87584.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025228|gb|EDX63898.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225790943|gb|ACO31160.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228596391|gb|EEK54062.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228811062|gb|EEM57404.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 229

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMRNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|90417639|ref|ZP_01225551.1| two-component response regulator, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337311|gb|EAS50962.1| two-component response regulator, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 225

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       ++G   +   S      L  +   D   I+  L   G   L 
Sbjct: 4   LVIEDDRSTADYVTGGLKEEGHDPDHAASGPIGLELACTRDYDAMVIDRMLP--GLDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R +R+     P+I ++    L   ++  ++G DD + KP    E++AR+ A+ RR   
Sbjct: 62  IVRALRSSGRDTPVIFLTSVSGLDDRVEGLEAGADDYLVKPFAFSELMARLNALARRSPM 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      + G + +    R    +G+   L  RE R+LEY+M NRG+ + +T +   ++ 
Sbjct: 122 RREEAVLKVGDLEMNLIARTVRREGQSVDLQPREFRLLEYMMRNRGRVLTRTMLLERVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            F      NVVE+H+S+LR K+      + + + R  GY ++ 
Sbjct: 182 -FHFDPRTNVVETHVSRLRGKVDRPFSTEMIKTIRGSGYVLNV 223


>gi|56540679|gb|AAV92793.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +          G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELTVGNLTLNMGRHQAWKDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|28379577|ref|NP_786469.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254557719|ref|YP_003064136.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300769515|ref|ZP_07079401.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308181805|ref|YP_003925933.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28272417|emb|CAD65340.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254046646|gb|ACT63439.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300492930|gb|EFK28112.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308047296|gb|ADN99839.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 229

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   +  +N  E    L ++    +  ++  +       
Sbjct: 3   ILVVDDDKEIAQLLEIYIKNEGYEPISAYNGREALTKLNTNPDIALMILDIMMPE--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + +R  SQ+P++ +S        +    +G DD V KP +  EI+ARV ++ RR +
Sbjct: 61  IEVIKEVRKDSQLPILVLSAKTGDMDKIQGLITGADDYVTKPFNPLEIMARVKSLLRRSE 120

Query: 121 -----VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  + GP+ +  D  +   + G+   L   E  IL  L ++  +  +   IF
Sbjct: 121 NNVTTTEPDILDIGPLTINKDSHEVKTLTGKDIQLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY I+
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKIE 227


>gi|290769859|gb|ADD61631.1| putative protein [uncultured organism]
          Length = 230

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   +E LQ    ++   +   ++  G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAENIEADFCNT--GKEGLQKLKEQEYQLVVLDVMMPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N++       +   +++  + R    +   F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 227


>gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium marinum M]
 gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium marinum M]
          Length = 240

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +           R D   ++  +   G    
Sbjct: 16  ILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMP--GMDGF 73

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR  
Sbjct: 74  GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  N+R     I +  +  +    G+   L   E  +L Y + N G  ++K +I  
Sbjct: 134 KGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 HVW-RYDFGGDVNVVESYVSYLRRKI-DTGDKRLLHTLRGVGYVL 236


>gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
 gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
          Length = 239

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +          AR D   ++  +   G     
Sbjct: 16  LVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMP--GMDGFG 73

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235


>gi|86609479|ref|YP_478241.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558021|gb|ABD02978.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 239

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G S+E   +         + +  +  ++  L        
Sbjct: 4   ILIIDDDPSICALLQRYLQRQGYSVEVAMTGAEGLQQLRAFQPALVILDLNLPDV--SGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L + ++  + V ++ ++   S    L  F  G DD + KP    E+ ARV AI RR + 
Sbjct: 62  DLCQQMQKETGVYVLMLTSRVSPADKLHGFQLGADDYLTKPFSLPELQARVQAILRRQRM 121

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S        + +  + R    +  +  L   E  +L  +  + G+   + ++   
Sbjct: 122 KTEVASAPVLTFASLVIDPETRAVIREQRLINLTALEFDLLYAMARHPGRVWRRAELIQE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++  F+   +E VV+ HI ++RKKL  +    + + + R +GY  +
Sbjct: 182 VWD-FNHEGDERVVDVHIGQIRKKLETDTSQPELIRTVRGVGYKFE 226


>gi|75911110|ref|YP_325406.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704835|gb|ABA24511.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 238

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 92/226 (40%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    L      D+  ++  L        
Sbjct: 6   ILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFEQFNPDLVILDVNLPDVI--GF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +++ + V ++ ++        +  F  G DD + KP    E+  RV AI RR +V
Sbjct: 64  NLCQEMQSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 123

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R+  +  +  PL   E  +L +L ++ G+   + ++   +
Sbjct: 124 VTTAEQKRLTFEKLMIDPVRREVTLNSQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++   ++ VV+ HI ++RKK+  +      + + R +GY  + 
Sbjct: 184 WD-YEYVGDQRVVDVHIGQIRKKIEVDASQPALIQTVRGVGYKFEC 228


>gi|307329401|ref|ZP_07608563.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306884935|gb|EFN15959.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  ++   + E    L       V  ++  L   G    +
Sbjct: 4   LVVEDEQNIALAVDRGLRAEGFGVDIAENGEKALGLIRHNDYAVIVLDLMLP--GRNGYD 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++         D  D G DD + KP     +LAR+ A+ RR   
Sbjct: 62  VCRTLRAAGIATPVLILTAKDGEYDEADALDLGADDYLTKPFSFVVLLARIRALLRRSAP 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +           E   L  RE  +LE+L+ +    V+KT + + ++  
Sbjct: 122 QRSPVLRAGDLWLDPAAHRCGRGDERLDLTPREFGLLEFLLRHPDTVVSKTDLLAQVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +    + N+VE ++  LR+K+    G   +D+ R +GY +D
Sbjct: 182 W-FEGDPNIVEVYVGYLRRKIDIPFGRSAIDTVRGVGYRLD 221


>gi|300856126|ref|YP_003781110.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300436241|gb|ADK16008.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 230

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 98/226 (43%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G ++    +L+ EE L      +   I   ++      +
Sbjct: 5   ILIADDNIEIIKILKPYIEKEGFTV--IFALDGEEALLKFNHYNPQLILLDIMMPLMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S  P+I I+        +   +SG DD + KP    E++AR+ A+ RR+  
Sbjct: 63  EVCNKIREKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAVLRRITF 122

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      +   + +  D    +++G+   L ++E  +L  L ++  K V++  +   I
Sbjct: 123 PESNKMSLIKYESLELDIDNYSVKLKGKNINLTKKEIEVLWMLSSSPNKIVSRDDLLDNI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +G+ D   +   V++HI ++R KL     ++  + +   +GY  + 
Sbjct: 183 WGV-DYFGDPRTVDTHIKRIRSKLHLNGQYNWDIKTIWAIGYKFEV 227


>gi|163745626|ref|ZP_02152986.1| Two-component transcriptional regulator, winged helix family
           protein [Oceanibulbus indolifex HEL-45]
 gi|161382444|gb|EDQ06853.1| Two-component transcriptional regulator, winged helix family
           protein [Oceanibulbus indolifex HEL-45]
          Length = 223

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             ++G +++            ++ + DV  ++  L       L
Sbjct: 3   LLVVEDDTTTSTYIARGLREEGHAVDVVADGRDGLVQATTGQYDVLILDRMLPE--LDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A +  P++ ++   +++  +D  ++G DD + KP    E+ ARV A+ RR +
Sbjct: 61  TLLKTLRGAGNATPVLLLTAMGAVEDRIDGLNAGADDYLVKPFAFGELSARVNALARRPQ 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +    R     G+   L  RE  +LE+L+  +G+   +T +  A++
Sbjct: 121 ALEQETTLRAGNLTMDLISRRVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      + + + R  GY I+
Sbjct: 181 DIS-FDPMTNVVETHISRLRAKVDRPFDVELIQTVRGAGYRIE 222


>gi|83718179|ref|YP_439959.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83652004|gb|ABC36068.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 255

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G       +G +++   + +       +    +  ++  L  K    L 
Sbjct: 39  LLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDK--DGLA 96

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +   +R     +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 97  VLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQTG 156

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G +R+          G+   L  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 157 RAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLY-S 215

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 216 WGEEIESNAVQVHIHNLRKKL----GHDTILTVRGVGYRI 251


>gi|56416091|ref|YP_153166.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197365017|ref|YP_002144654.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|204926850|ref|ZP_03218052.1| DNA-binding response regulator BasR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|56130348|gb|AAV79854.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096494|emb|CAR62101.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|204323515|gb|EDZ08710.1| DNA-binding response regulator BasR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322615448|gb|EFY12368.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618508|gb|EFY15397.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622079|gb|EFY18929.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627151|gb|EFY23943.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631110|gb|EFY27874.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637671|gb|EFY34372.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642482|gb|EFY39083.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643642|gb|EFY40196.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648285|gb|EFY44745.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653516|gb|EFY49846.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659657|gb|EFY55900.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662133|gb|EFY58349.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666120|gb|EFY62298.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672540|gb|EFY68651.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675969|gb|EFY72040.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680454|gb|EFY76492.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684651|gb|EFY80655.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194670|gb|EFZ79861.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197156|gb|EFZ82296.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201727|gb|EFZ86791.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206241|gb|EFZ91203.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213252|gb|EFZ98054.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215623|gb|EGA00367.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222045|gb|EGA06431.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227912|gb|EGA12066.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229081|gb|EGA13210.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236308|gb|EGA20384.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237572|gb|EGA21633.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241762|gb|EGA25791.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248090|gb|EGA32027.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254579|gb|EGA38390.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258361|gb|EGA42038.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323259640|gb|EGA43274.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265913|gb|EGA49409.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270355|gb|EGA53803.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 222

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRISGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +          G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|330955030|gb|EGH55290.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           Cit 7]
          Length = 224

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPE--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R      ++ ++    L+  +   + G DD + KP    E+LARV  + RR + 
Sbjct: 61  EVLSRLRKTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|269836215|ref|YP_003318443.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269785478|gb|ACZ37621.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 231

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++    + +    L++   E V  +   ++  G    +
Sbjct: 8   LIVDDEEDIVALMRDFLEAEGYAV--LAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGYD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR +  VP++ ++        +     G DD + K     E++AR+ A+ RR +  
Sbjct: 66  VLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYRRG 125

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +     +  V G+   L  RE  +L+    +  +   + Q+F  ++
Sbjct: 126 EPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQRLW 185

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G   E  + + V  HI +LR+K+  +      + +   +GY  D
Sbjct: 186 G---EFGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFD 226


>gi|229090890|ref|ZP_04222118.1| Two-component response regulator vanR [Bacillus cereus Rock3-42]
 gi|228692499|gb|EEL46230.1| Two-component response regulator vanR [Bacillus cereus Rock3-42]
          Length = 242

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKV--FSAHNGEEALEIINYNSIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|219667582|ref|YP_002458017.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537842|gb|ACL19581.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G  ++             S   D+  ++  L        
Sbjct: 4   ILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGTYDILIVDLMLPQ--LDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R   ++P+I +S        +   D G DD + KP    E++AR+ +  +R + 
Sbjct: 62  EIIKEVRKKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRYER 121

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + + +      V G+      +E  +L +  +N     +K +IF 
Sbjct: 122 LTGKHQGIEVINHRGLEINTASHKVYVNGKEVQFTAKEYELLLFFASNPNILFSKERIFD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            ++G  +   +   V  HI K+RKK+ R+    + +++    GY  +
Sbjct: 182 LLWGA-EYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGYRFN 227


>gi|219849580|ref|YP_002464013.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543839|gb|ACL25577.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 236

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +           L       +  ++  L   G   L
Sbjct: 5   ILVVDDEPGIVKIARDYLERAGFHVISAGDGPSALRLARQEHPSLIVLDLMLP--GMDGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R +R       VP+I ++        L   + G DD + KP   RE++ARV A+ RR
Sbjct: 63  DVTRALRQDPLTAGVPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVLRR 122

Query: 119 LKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           ++         + G + +  + R      E+  L   E  +L  L +  G+   + Q+  
Sbjct: 123 IEGHLQPTKVIQAGRLTIDLERRIVRRDNEIIELTATEFELLTILASAPGRPFTRAQLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
            IY   +    +  +++HI  LR+K+       P  + +   +GY  
Sbjct: 183 RIYNT-NYIGFDRTIDAHIKNLRRKIEPDPNGPPRLILTVYGVGYKF 228


>gi|148653957|ref|YP_001281050.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148573041|gb|ABQ95100.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 240

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 95/231 (41%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +    + +    +  +    +  I   L+      +
Sbjct: 5   ILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDGM 64

Query: 62  ELPRIIR-----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           ++ + IR       ++VP++ ++        +   + G DD ++KP   RE+LAR+ A+ 
Sbjct: 65  QVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIRAVL 124

Query: 117 RRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR +  N      +    G + VF D  +  +  +   L   + ++L Y   + GK + +
Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKVLNR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q++ A+         +  ++ HIS+LR  + +       + + R +GY  
Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
 gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
          Length = 228

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +     +   E L+++  +D   I   L+       
Sbjct: 5   ILIVEDEKNLARFVSLELQHEGYEVSV--EVNGREGLETALEKDFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR   
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + N+     + +    R      E   L +RE  +L  LM N  + + + ++ S+
Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDEEISLTKREYDLLNILMTNMNRVMTREELLSS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225


>gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMP--GMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPSGYQKDIQTVRGIGYIL 220


>gi|238783795|ref|ZP_04627814.1| Two-component response regulator of virulence determinant [Yersinia
           bercovieri ATCC 43970]
 gi|238715346|gb|EEQ07339.1| Two-component response regulator of virulence determinant [Yersinia
           bercovieri ATCC 43970]
          Length = 218

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 105/218 (48%), Gaps = 5/218 (2%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D AL++        + G  ++     +  ++       D++ I+  L   GE  L L R
Sbjct: 2   EDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLP--GEDGLSLIR 59

Query: 66  IIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
             R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + +++
Sbjct: 60  RWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIGLAS 119

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E  P ++    R+  V  +   L   E  I+E L+ N G+ V+K  +   +Y    E
Sbjct: 120 QVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNSGRVVSKETLMLQLY-PDAE 178

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E + ++  + +LRKKL+ +   + + + R  GY  D
Sbjct: 179 LRESHTIDVLMGRLRKKLQAEHEGEVITTIRGQGYRFD 216


>gi|317968094|ref|ZP_07969484.1| two-component response regulator [Synechococcus sp. CB0205]
          Length = 249

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +    + + +E L++    +   +   ++       
Sbjct: 12  ILVVDDEPSIRRILETRLSMIGYQV--VTACDGQEALEAFRNTNPDLVVLDVMMPKLDGY 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 70  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIGK 129

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   IR+ ++ R      E   L   E  +LE L+   G+  ++ +I 
Sbjct: 130 EGAAGIPNSGVIQINEIRIDTNKRQVFRGDERIRLTGMEFSLLELLVGRSGEPFSRGEIL 189

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 190 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 235


>gi|193222240|emb|CAL60747.2| Transcriptional regulatory protein CusR [Herminiimonas
           arsenicoxydans]
          Length = 227

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      +  + + D+  ++  L        
Sbjct: 3   ILVVEDENKTADYVRQGLMEAGFMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDV--DGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A  Q+P++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVKSLREAGKQMPVLFLTARGGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGS 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + R E   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APSQSERLEVADLILDLPRRKATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  I +LR K+ +      + + R +GY++D
Sbjct: 181 DM-NFDSDSNAIDVAIRRLRAKIDDPFEPKLIHTVRGMGYTLD 222


>gi|257869521|ref|ZP_05649174.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|9294730|gb|AAF86641.1|AF162694_5 response regulator VanRc [Enterococcus gallinarum]
 gi|67479938|gb|AAY67971.1| reponse regulator [Enterococcus gallinarum]
 gi|257803685|gb|EEV32507.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 231

 Score =  224 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   + D       ++G S++ F               D++ ++  L        
Sbjct: 5   IVVVDDEKEIADLVTTFLQNEGFSVQPFYDGTSAIAYIEKEAIDLAVLDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR     P++ ++        +     G DD V KP +  E++ARV    RR + 
Sbjct: 63  QLLQQIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N           E   + +  +     + G+   L   E +IL YL  ++G  V+   +
Sbjct: 123 YNHSTASPTVEEYEKDGLILKINSHQCILYGKEVFLTPIEFKILLYLFEHQGSVVSSETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F A++         N V +HI++LR+KL         + +   +GY I+
Sbjct: 183 FEAVWKEK-YLDNNNTVMAHIARLREKLHEEPRKPKLIKTVWGVGYIIE 230


>gi|188996079|ref|YP_001930330.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931146|gb|ACD65776.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 224

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         ++G  +    + + EE L  +  E+   I   L+        
Sbjct: 4   LIVEDDKNLSKLIAKRLKEEGYDV--VQAYDAEEGLNYANYENFDIIILDLMLPKMSGFY 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R    + P++ +S   S++  +     G DD + KP    E+LAR+ A+ RR K 
Sbjct: 62  IIESLRNKKIKTPILVLSAKDSVEDKVKGLSLGADDYLTKPFSFPELLARIQALVRRSKD 121

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   + +   + +    ++     +   L  +E  +L+YLM N  K V +  I + ++ 
Sbjct: 122 IDEISKLKYHDLVMDLLKKEVYRGNKKIDLTAKEYELLKYLMENAEKIVTRNMILANVFD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + D  +E NVV+  I +LR K+        + + R  GY +  N
Sbjct: 182 I-DFDIESNVVDVQIHRLRDKIDKGFDKRLIHTVRGFGYVLKAN 224


>gi|167590140|ref|ZP_02382528.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia ubonensis Bu]
          Length = 227

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++             +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGLHQAETEDYDLLVLDVMLP--GQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R     P++ ++    +   +   + G DD + KP    E+ AR+ ++ RR + 
Sbjct: 61  TLLQNLRRSKSTPVLFLTAMDDVGDRVKGLELGADDYLAKPFDFVELTARIKSVLRRGQP 120

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N      + +    R    QG+   L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RESNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|238061271|ref|ZP_04605980.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237883082|gb|EEP71910.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 227

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L        E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLMLPE--MSGTE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRQRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSPD 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +        GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 123 VAESGAPTLAAGPVRMDIERHVVTVDGGTVQLPLKEFELLELLLRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEPEPSAPRFIVTVRGLGYKFE 226


>gi|182685018|ref|YP_001836765.1| response regulator [Streptococcus pneumoniae CGSP14]
 gi|182630352|gb|ACB91300.1| response regulator [Streptococcus pneumoniae CGSP14]
          Length = 236

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 91/212 (42%), Gaps = 14/212 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G S +   +      L  +   D   ++  L       +E
Sbjct: 6   LLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQ--LDGME 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA   + P++ +S        +   + G DD + KP   RE+LARV A+ RR K 
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                +           G ++V+ +  +     ++  L  +E  +L YLM +    + + 
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
           ++   I+G +D   E  +V+ HI KLR+K+ +
Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIED 214


>gi|118593260|ref|ZP_01550645.1| two-component response regulator [Stappia aggregata IAM 12614]
 gi|118434151|gb|EAV40807.1| two-component response regulator [Stappia aggregata IAM 12614]
          Length = 240

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D             E     +            +  ++  L       L
Sbjct: 6   ILVVDDDPHIRDVICFALQKASYVFEVAADGKEALDKALLCNPSLIVLDIGLPE--MDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S+VP++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 64  DVCRHLRRTSEVPILFLSARDDEIDRIVGLELGADDYVTKPFSPRELIARVGAILKRYGG 123

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G + +    R   V      L   E  IL  L+A       + QI
Sbjct: 124 LTAAQTDEDLPALRFGAVELDRSQRHVSVAETPVTLTAIEFDILATLLARPKIVFTREQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + Y   +  V +  ++SHI  +R KL +    D +++   +G+ +
Sbjct: 184 LQSAY-RDNIHVSDRTIDSHIRNIRAKLGSAGCGDAIETVHGVGFRL 229


>gi|119855088|ref|YP_935693.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|145225906|ref|YP_001136560.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|119697806|gb|ABL94878.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|145218369|gb|ABP47772.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 246

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +   +   +S             DV  ++  L   G   +E
Sbjct: 15  LVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLALP--GIDGVE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR +  
Sbjct: 73  VCRQLRTFSDAYVVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPRTV 132

Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             GP+ +   GR   +  E   L R E  IL  L +      ++
Sbjct: 133 ATPTSAATAADEPPPRAFGPLSIDVAGRQVFIDDEPVLLTRTEFDILAALSSRPAVVFSR 192

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            Q+  A++G       +++V+ HI  LR+KL  +  G   V + R +GY +
Sbjct: 193 RQLLEAVWGDS-WGGNKHLVDVHIGHLRRKLSDDPAGPRYVITVRGVGYRM 242


>gi|255655475|ref|ZP_05400884.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296451467|ref|ZP_06893204.1| response regulator [Clostridium difficile NAP08]
 gi|296880184|ref|ZP_06904150.1| response regulator [Clostridium difficile NAP07]
 gi|296259734|gb|EFH06592.1| response regulator [Clostridium difficile NAP08]
 gi|296428773|gb|EFH14654.1| response regulator [Clostridium difficile NAP07]
          Length = 241

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 104/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +  G       +G S++    L   + + SS    +  ++  L        
Sbjct: 11  LLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSLILLDVTLPD--GTGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL + IR  SQ+P+I ++        +   D G DD + KP   RE+++R+ A+ RR   
Sbjct: 69  ELCQYIRGFSQIPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKAN 128

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ S    + G + +++         +   L   E ++L  L+ N+   +++TQI   +
Sbjct: 129 TVEESKKILKFGDLSIYTLEARVYKNDKEVFLTSVEYKLLLILIQNKNTVLSRTQILEKL 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
           + +  + V +N +  +I +LR+K+ + L     +++ R LGY 
Sbjct: 189 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGLGYK 231


>gi|207724835|ref|YP_002255232.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207739498|ref|YP_002257891.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|206590060|emb|CAQ37021.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206592877|emb|CAQ59783.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 222

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +               E  +              ++  ++  L   G+  
Sbjct: 4   MILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLP--GKDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S +P++ ++        L   + G DD + KP   RE++AR+  I RR++
Sbjct: 62  LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRRVQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E+  + + +      ++G+   L   E R+L  L    G+ +++  +   IY  
Sbjct: 122 RGGAQPES-LLLIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 181 H-RIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 221


>gi|153009992|ref|YP_001371207.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561880|gb|ABS15378.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 255

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S +     E    L  +   DV  ++  L  +    L
Sbjct: 23  ILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKR--DGL 80

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +RA   + P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 81  SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     G + +         Q     L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 201 D-YHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYML 241


>gi|295097535|emb|CBK86625.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 219

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G +++ F   +  +    +A  D   ++  L       L
Sbjct: 3   ILLVEDDRLIGDGIKAGLSKMGFNVDWFTDGKTGQAALYTAPYDAVVLDLTLPE--IDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R  R   +  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EILRAWRESGKSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRSH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + +        ++GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQARSELRHGKVMLDPASLVATLEGETLVLKPKEFALLELLMRNAGRVLPRKAIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 181 -WDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 216


>gi|291561767|emb|CBL40567.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 231

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G ++    + +  E L+   + +V+ +   ++  G   +
Sbjct: 4   ILVCDDDKQIVEAINIYLTGEGFNV--IKAYDGYEALELLEKNEVNLMIVDVMMPGLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RTTLKVRETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 121

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S+   + G + +  + ++  V GE   L   E  IL  L+ N GK  +  QI
Sbjct: 122 LGNLNQQGSSQVYKCGGLMINDENKEVTVDGEPIKLTPIEYNILLLLVKNAGKVFSIDQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+   D    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 182 YEKIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIE 229


>gi|229020065|ref|ZP_04176847.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229026294|ref|ZP_04182653.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228735010|gb|EEL85646.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228741222|gb|EEL91438.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 229

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +    K 
Sbjct: 63  SVCRRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRKT 122

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +N   E          I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TNKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|33864259|ref|NP_895819.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641039|emb|CAE22168.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 248

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +  F + +  E L      +   +   ++       
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYQV--FTACDGNEALDIFHNCEPDLVVLDVMMPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   +RV ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EHVAGIPNSGVIQVAELRVDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|312172890|emb|CBX81146.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 235

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 95/226 (42%), Gaps = 7/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + ++++D   +    +                 E  +W++  A  D+  ++  L      
Sbjct: 9   LILIVEDEPKLGQLMVDYLQAANYRTHHLLRGDEVVDWVKQHA-PDMVLLDLMLPA--MD 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
            L + R +R  S++P++ ++        L   + G DD + KP   RE++ARV  I +R 
Sbjct: 66  GLSVCRELRRFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKTILKRC 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+       P+ +           +   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 126 RRVTEETLTISPLLIDERRFQASWGEKPLDLTPAEFRLLKTLAQQPGKVFSREQLLNHLY 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +     P + +   +GY  + +
Sbjct: 186 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQPFIRAVYGIGYRWEAD 230


>gi|299822847|ref|ZP_07054733.1| response regulator [Listeria grayi DSM 20601]
 gi|299816376|gb|EFI83614.1| response regulator [Listeria grayi DSM 20601]
          Length = 230

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 28/235 (11%)

Query: 2   FVLIDDRALV---------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++I+D   V         K+   A F  DG   EG +    E+W       +   I+  
Sbjct: 3   LLMIEDNHSVCEMMELFFMKETITATFIHDG--QEGLDRFLEEDW-------EFVIIDLM 53

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L       + + + IR  S VP+I ++   S    +   + G DD V KP     +LAR+
Sbjct: 54  LPS--LDGMTICKKIREASDVPIIILTAKESESDQVLGLEMGADDYVIKPFSPITLLARI 111

Query: 113 AAIYRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGK 166
            A+ RR         ++   T    V    R+    G+    L  +E  +L + + +  +
Sbjct: 112 KAVKRRHHKVEGSQPSSIIRTKDFVVDLQTREVLHLGKPLGALTPKEFDLLYFFLQHPRQ 171

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ Q+   ++G +    +E  V+ HI +LR+K+ N+     + +   +GY  +
Sbjct: 172 VFSREQLLEQVWG-YQFYGDERTVDVHIKRLRQKIANQKQH-YLFTIWGVGYKFE 224


>gi|226326489|ref|ZP_03802007.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198]
 gi|225205088|gb|EEG87442.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198]
          Length = 235

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 85/222 (38%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G                     D+  ++  L  K    +
Sbjct: 10  ILIVEDEPKLAQLLIDYLQSSGYQTYWLADGAEVCHCVKQQHYDLILLDLMLPVK--DGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S +P+I ++        L   + G DD + KP   RE++ARV  + RR   
Sbjct: 68  TVCKELRQFSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRRFYR 127

Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +  +   +  +       +   ++  L   E R+L+ L    GK + + Q+   +Y  
Sbjct: 128 PQDIVQNDKLVVIDEQAYQIQYNNKILDLTTAEFRLLKALATQPGKILTRDQLMDHLYDD 187

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +   V +  ++SHI  LR+KL       + + S    GY  +
Sbjct: 188 Y-RIVTDRTIDSHIKNLRRKLEQLNDQIEFIRSIYGQGYRWE 228


>gi|330977884|gb|EGH77787.1| two component transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 220

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +G       +G +++             S   D++ ++  L        
Sbjct: 3   LLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPT--LSGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R + S +P++ ++   + +  +   DSG DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRRSA 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   IR+    +          L  +E ++L  L++  G+ + + ++   +YG
Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++E  E N +E HI  LRKK  + L    + + R +GY ++
Sbjct: 181 -WNEEAESNTLEVHIHHLRKKFSSTL----IRTIRGVGYLVE 217


>gi|323703748|ref|ZP_08115387.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531272|gb|EGB21172.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         ++G  ++          L    +  V  ++  +   G    
Sbjct: 12  ILLVDDEPNILQFLELGLSNEGFEVQTAQDGLTAINLMKQFQPHVVILDVMMP--GMDGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+++    V +I ++    +   +   + G DD + KP    E+LAR+ A   R + 
Sbjct: 70  EVCRMLKKMDNVAVIMLTAKDEVDDRVKGLNLGADDYMIKPFSFEELLARIYARI-RNQF 128

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N       GP  +    ++      V  L   E  +L++L+ N G  ++K  I   ++G
Sbjct: 129 PNLFGEVVIGPFHIDDRRKEIRFADRVLELSPTEYELLKFLILNHGLVLSKAMILDKVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   EEN+VE +I  LR KL +K     + + R  GY +D
Sbjct: 189 -YDFGGEENIVEVYIRSLRDKLNDK-NHQLIRTLRGSGYRVD 228


>gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
 gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
          Length = 225

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          DG   +    L+ +E L+    E+   I   L   G   L
Sbjct: 3   ILIIEDEEQLCRSIAEGLRMDGYETD--TCLDGDEGLELCTTENYDLILLDLNLPGIDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R  +S  P++ +S    ++  ++  D G +D + KP H  E+ AR+ ++ RR  
Sbjct: 61  DILRQFRETNSSTPVLILSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRRF 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  N   + G I   +  R   +  E   L R+E  +LEY M ++ + ++  ++   I+ 
Sbjct: 121 IQENVCLKCGHISFDTRTRKAHIDSEELSLTRKESALLEYFMLHQNRIISPEELIEHIWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N +  HIS LRKKLR  LG DP+ +K   GY +
Sbjct: 181 GS-VNSFSNSIRVHISSLRKKLRAALGNDPIQNKVGQGYIL 220


>gi|300916216|ref|ZP_07132966.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300416452|gb|EFJ99762.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
          Length = 227

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 4   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDV--NGW 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 62  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + V    R     G    L  +E  +LE+ + + G+ + ++ I S ++
Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHHGEVLPRSLIASQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  + +LR K+ N  G   + + R +GY ++
Sbjct: 182 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLE 223


>gi|187934136|ref|YP_001885585.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722289|gb|ACD23510.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 231

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + +       ++G  +  F +    + +     E +  +   ++  G    +
Sbjct: 5   LIIDDEVEIVELIEVYLVNEGYKV--FKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR    +P+I +S        +    +G DD + KP +  E++ARV +  RR    
Sbjct: 63  VCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122

Query: 123 NNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           N +          E   I +          G+   L   E  IL  L  N G   +   I
Sbjct: 123 NEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAEDI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++         N V  HI +LR+K+  N      +++   +GY I+
Sbjct: 183 FKEVWKEKYFEGN-NTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIE 230


>gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 230

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+I+D   +  G     G +G S+   +  E    L  + R D+  ++  L   G   L
Sbjct: 5   IVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTERPDLVLVDVMLPRLG--GL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR    ++P++ +S        +     G DD + KP   +E+LAR+ A+ RR +
Sbjct: 63  EVVREIRKTDPELPILILSAKGQEGDKVAGLQLGADDYLVKPFGLKELLARIDALLRRRR 122

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       + G I +  + R   V G    L  RE  +L + + +  +  ++ Q+ 
Sbjct: 123 SRGETGPNRAVRKVGQIELDLEARRATVGGSTLDLTSREYDLLAFFVTHPDRVFSREQLM 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             ++G          V++ I++LR  + +       +++ R +GY  +
Sbjct: 183 ENVWGSR-YFGTARTVDNFIARLRAHIGDDAERPRHLETVRGVGYRFN 229


>gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 233

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE--WLQSSAREDVSAIEAFLIGKGEK 59
            ++ +D   +++  +      G  +   N  E     +       DV  ++  +   G  
Sbjct: 4   ILICEDEDTIREFVVINLKRAGYDVVDVNCGEDALKTFEAEHGNFDVVLLDIMMP--GID 61

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              + + IR  S  + +I ++        +     G DD + KP    E+ ARV AIYRR
Sbjct: 62  GFTVCKKIREKSSTIGIIMLTARTQEMDKVSGLMIGADDYITKPFSPSELTARVDAIYRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +          +  E+GP  +    R     GE   L + E +I+E+ M N+   + +  
Sbjct: 122 VCMSFIKNEQQSVIESGPFTLNLKSRTVTKDGEPIELTQVEYQIMEFFMNNKNTALDRAS 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           I + I+G      ++ +V+ +I ++R K+  +      + +    GY   WN
Sbjct: 182 ILNHIWGES-YYGDDKIVDVNIRRIRMKIEEEPSNPKYIITIWGYGYK--WN 230


>gi|229062519|ref|ZP_04199832.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716802|gb|EEL68493.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 242

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +    + + EE L+   + DV  I   ++      +
Sbjct: 15  ILIVDDEKEIRKLIAIYLKNEGYEV--LQARDGEEGLEIVRKRDVHLIVLDIMMPKIDGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R  +++P+I +S        +    +G DD V KP +  E++AR+ +  RR   
Sbjct: 73  HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N  E G I++    R   +  E   L  RE  +LE L  N+G  +   QI+
Sbjct: 133 MSGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIY 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
             ++        +N V  HI K+R+K+         + +   +GY I+ +
Sbjct: 193 ERVWKEKAFQ-SDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGYKIEKD 241


>gi|290954874|ref|YP_003486056.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644400|emb|CBG67485.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 229

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D   +   D G +++         W+    R D   ++  L   G    
Sbjct: 9   LLLVEDELRLADVIKSGLVDKGFAVDVVGDGSEAVWMAGEHRYDAIVLDVMLP--GLNGF 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +R      P++ ++        +   DSG DD + KP     +LAR+ A+ RR  
Sbjct: 67  AVCRKLRESGNWTPIMMLTAMDGELDEVQSLDSGADDYLAKPFSFAVLLARLRALVRRGA 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G ++V          G    L  +E  +L  L    G+ V KT++    + 
Sbjct: 127 QERPAVIEVGDLQVDPAAACARRGGVHIALTPKEFAVLHLLARRAGQVVTKTELLQHAWD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F    + N+VE ++S LR+K+        + + R  GY ++
Sbjct: 187 -FAFEGDPNIVEVYVSALRRKIDAPFAVRTLTTVRGSGYLLE 227


>gi|308068910|ref|YP_003870515.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305858189|gb|ADM69977.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 231

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +  ++   ++   +E L +     +  I   ++      L
Sbjct: 5   ILVVDDDEEIVKLITKSLRYEQFAI--ISACSGKEALSALEENHIDFIVLDIVMPDMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR    VP++ +S        +   + G DD + KP   +E+++R+ A +R++  
Sbjct: 63  DVCRSIRNSYNVPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELVSRIKAHFRKVDR 122

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +N     P+ +     +  +      L  +E +IL  LM +    + + Q
Sbjct: 123 LFKEWDELSPSNEKADAPLILNDKTFEAFLNSRKLDLSTKEFQILSILMRHPNHVLTREQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+  ++G  DE  E N V  HI  +RKKL +   +D + +   +GY 
Sbjct: 183 IYENVWG--DEYGEINTVTVHIKNIRKKLGS--EYDFIKTIWGIGYK 225


>gi|302867311|ref|YP_003835948.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506283|ref|YP_004085170.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302570170|gb|ADL46372.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412902|gb|ADU11019.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 246

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +    S           R D   ++  L        +
Sbjct: 23  LVVDDEPTLTDLLSMALRYEGWQVATAGSGMAAVTTARQFRPDAVVLDVMLPD--LDGFQ 80

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     VP++ ++   +++  +     G DD V KP    E++AR+ A+ RR   
Sbjct: 81  VLRRLREQFPSVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 140

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G + +  D  +     ++  L   E  +L YLM N  + ++K QI   
Sbjct: 141 AVAARQEAVLTVGDLTLDEDSHEVRRGDDLITLTATEFELLRYLMRNPRRVLSKAQILDR 200

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 201 VWN-YDFGGQANVVELYISYLRKKI-DAGRAPMIHTLRGAGYVL 242


>gi|254555419|ref|YP_003061836.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308179421|ref|YP_003923549.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254044346|gb|ACT61139.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308044912|gb|ADN97455.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 234

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 97/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-------AIEAFLI 54
            ++++D   +  GY+       +  E FN L     L +               ++  L 
Sbjct: 5   ILIVEDEGSL-SGYLT----KELQFEDFNVLVAANGLAAMETYQAHQNELLLILLDWMLP 59

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                 +E+ R IR H QVP+I ++    +   +   D+G DD + KP    E+LAR+  
Sbjct: 60  --KLDGMEVLRRIRKHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRV 117

Query: 115 IYRRLKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           I RR++     N   +   I++ +         E   L  RE  +L++ +A+  +   + 
Sbjct: 118 IQRRIENQVEPNQVYQLDDIQLDTKAHRVTNGQEEVTLTHREYDLLQFFLAHPDEVFTRD 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   ++G  D   ++NVV+ ++  LR K+        + + R +GY +
Sbjct: 178 DLLDQVWGA-DFLGQQNVVDVYVGYLRNKITTTGASPLIQTVRGVGYKL 225


>gi|229059543|ref|ZP_04196925.1| hypothetical protein bcere0026_16550 [Bacillus cereus AH603]
 gi|228719826|gb|EEL71420.1| hypothetical protein bcere0026_16550 [Bacillus cereus AH603]
          Length = 229

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++ +         G +++       E+ LQ    ED   +   ++  G    
Sbjct: 4   ILIIEDEAIIAELEKDYLEVAGYTVDI--DYSGEKGLQRVILEDYDLLILDIMLPGIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQVRLKKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   +      + +    R   + G    L  +E  +L  +  +  +  +K ++F
Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFINGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G+ D   +   V  H+  +R+K+  +      +++   +GY  
Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227


>gi|331017288|gb|EGH97344.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 222

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++         +  +S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLP--GMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R      P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQRWRGKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGTDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+KL    G   ++++R  GY
Sbjct: 181 DGENE-RDSNVIEVHVNHLRRKL----GRAVIETRRGQGY 215


>gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 231

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G   E   +      +    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPE--IDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A+ RR 
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   N  + G + V    R+     +   L  +E  +L+ L+ N+G  + +  +   I
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVAKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|148240129|ref|YP_001225516.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848668|emb|CAK24219.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 235

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +    +     DG+  +G N       L    R D+  ++  L       +
Sbjct: 9   LLIVDDDPKLLQFLLEELSQDGIVCQGANCGAEALLLLRQQRFDLVVLDWNLPDF--NGI 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++ +  L+  +   D G DD + KP    E+ ARV A  RR +
Sbjct: 67  EICRRLRSSGDTTPVLMLTAHHDLEDRVQALDLGADDYITKPFELPELHARVRAQLRRSR 126

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +N          G +++    R  +       L +RE  +L +L+ + G+  A+  I  
Sbjct: 127 YANPDAFAEPLTLGDLQLDLMSRKVQQGERELALSQREFDLLAFLVKHHGEVQARQHILD 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++G      + N ++ ++  LR+KL        + + R +G+ 
Sbjct: 187 SVWGAP-FVGDPNTLDVYMGYLRRKLEGPDRPRLLHTVRGVGFM 229


>gi|94972032|ref|YP_594072.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554083|gb|ABF43998.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 244

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        DG  +    + E  + L    + DV+ ++  L   G   LE
Sbjct: 19  LIVDDDPAILEILRVYLRQDGFRV--LEAREGAQALSLLPQADVAVLDWMLP--GMTGLE 74

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R   A   +VPL+ ++     +  L   + G DD V KP   RE++AR+  + RR+ V
Sbjct: 75  LARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRRMGV 134

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E G + +    R   ++GE   L + E  +L  L    G    + ++   ++G+ 
Sbjct: 135 -REVIEHGELHLDVRARAATLRGEALGLSKLEFDLLFTLAQYPGLAWTRERLLERVWGV- 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
           D    E VV+ HI+ LR+KL +       +++ R +GY    N
Sbjct: 193 DYPRMERVVDVHITGLRRKLGDHAEHPRYIETVRGVGYRFREN 235


>gi|325295330|ref|YP_004281844.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065778|gb|ADY73785.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ +       ++G  ++     E   +L      DV  ++  L       +
Sbjct: 3   ILLVEDEKLLANTLKKGLEEEGYIVDVAYDGEEGFFLGRCYGYDVIILDVMLP--KLDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   +R    + P++ ++   S++  +   DSG DD + KP  + E+LAR+ A+ RR  
Sbjct: 61  ELLLKLREEGVKTPILMLTAKDSVEDKVKGLDSGADDYLTKPFSYDELLARIRALLRRKS 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S     +   + +  + +  +  G    L ++E + L  L  N+ + ++K  +  ++Y 
Sbjct: 121 ESKTSFIKIKDLEIDLNKKIVKRAGNEIKLTKKEFKALTLLALNKNRVISKEFLIDSLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V  N +E  I++LRKK+        + + +  GY I
Sbjct: 181 T-DRFVSINAIEVLINRLRKKIDKDYPLKLIHTIKGFGYMI 220


>gi|326790774|ref|YP_004308595.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541538|gb|ADZ83397.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 225

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 102/230 (44%), Gaps = 20/230 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            +++DD  ++++        +G  +      E E+ +++  +      D+  ++  +   
Sbjct: 4   LLVVDDEKMIRELIKKYATFEGHEV-----TEAEDGMEAIEKCKMNQFDLIIMDVMMPE- 57

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                   R IR  +  P++ +S        +  F+ GVDD V KP   +E++ RV AI 
Sbjct: 58  -LDGFSACREIRKFTDTPVLMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVNAII 116

Query: 117 RRLKVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +R KV    A         ++V  D R   + G+   +  +E  +  Y++ NRG  +++ 
Sbjct: 117 KRGKVKEEAASKDVVCFQGLKVDFDARLVSIDGKNVEMTPKEYELFFYMVRNRGIALSRE 176

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + S ++G +D   ++  +++HI  LRK L        + + R +GY  +
Sbjct: 177 NLISNVWG-YDYYGDDRTLDTHIKLLRKSLGEY--ARLIVTLRGVGYRFE 223


>gi|296137109|ref|YP_003644351.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295797231|gb|ADG32021.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 239

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG +      G +++        +    S+  D+  ++  L        
Sbjct: 3   ILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGLPR--LSGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA    VP++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR +
Sbjct: 61  EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA--I 177
             ++   + GP+     GR   + G V  L  RE  +LE L+   G+ V+K Q+     +
Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+   +G   + + R LGY ++
Sbjct: 181 WG---EEVSTNAIEVYVHRLRKKIE--VGPVRIATVRGLGYCLE 219


>gi|253573665|ref|ZP_04851008.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847193|gb|EES75198.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 226

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++       + G+  +    +      L  S + D+  ++  +       
Sbjct: 4   ILVVDDDQHIRELVRLFLEEAGIDQVMEAENGRKALALVESEKVDMVILDIMMPE--MDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L R +R +  +PL+ ++     +  +  F+ G DD + KP    E++ARV A+ +R +
Sbjct: 62  WDLCRELRRYYDMPLLMLTAKGETRQVVKGFELGTDDYLVKPFEPAELVARVKALLKRYQ 121

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           VS +     G +R+     + E       LP +E  +L  L +  G+ + + Q+   I+G
Sbjct: 122 VSISQTVTIGALRMNRKTFEVESGESSITLPLKEFELLFKLGSYAGRTLTREQLIEEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D    E  ++ HI++LR++   +     + + R LGY ++ 
Sbjct: 182 -YDFEGNERTLDVHINRLRERFPEETFGFKIRTIRGLGYRLEV 223


>gi|225568320|ref|ZP_03777345.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
           15053]
 gi|225162849|gb|EEG75468.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
           15053]
          Length = 235

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +  + + +  E L+   RED+      ++      + 
Sbjct: 7   LIVEDDKEIREGVEIYLKSQGYEV--YQAADGREGLEVIEREDIHLAIVDVMMPRMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR +  
Sbjct: 65  MVVRLREKHDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRRYRKF 124

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S N    G + +  D  +  V GE   L   E +IL  LM + G+  +  +
Sbjct: 125 AEKLNEKEASANVHVIGGLEINEDTVEAAVDGEPVKLTPIEYKILLLLMKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   + A+  + +  HI  +R+K+  N      +     +GY I+
Sbjct: 185 IYERVWN--ERAITTDTIMVHIRNIREKIEINPKEPKYLKVVWGVGYKIE 232


>gi|195953641|ref|YP_002121931.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933253|gb|ACG57953.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 229

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 105/225 (46%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   + +       ++G  ++ F +             ++  ++  L   G   
Sbjct: 5   VVYVVEDDIDLAEILTFNLENEGFEVKHFTNGNEFFKTMEQTIPNIIILDIMLP--GYDG 62

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + + +I+R +     +P+I ++     +  ++ F++G DD + KP   +E++AR+ A+  
Sbjct: 63  VRIAKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAVLN 122

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K  ++ N+ +   + +  D  +  + G+   L + E RIL+YL+ N  K + + +I +
Sbjct: 123 RYKKTITTNKLKVENLELDEDKMEVTLDGKPINLTKTEFRILKYLLENIDKIMTRDKIIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +   + +  V+ HI  LR KL +      + + R +GY  
Sbjct: 183 MLW-SYGTDINDRTVDVHIKHLRDKLGDFG--KYIRTIRGVGYKF 224


>gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 227

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++            +    + + +E L  +ARE    I   +        
Sbjct: 3   ILLVDDDPRLRELVRIALERADWQV--ITAADGQEALLHAAREAPDLIVLDIGLPELDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S+VP++ ++        +   + G DD V KP   RE++AR+ AI +R + 
Sbjct: 61  EVCRRIRQRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIAKRSRA 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +       G + +        + G+   L  RE+ IL+ L    G+  +K ++   I+G 
Sbjct: 121 NGTVPVNHGALTLDPQAHRCWLNGQEIALTAREQSILQLLTKAPGRLCSKPELIHHIWGA 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               V +  ++SH+  LR K       + +++    G  +
Sbjct: 181 G-SQVSDRTLDSHLRNLRGKFSEAGNPELIETVHGAGIRL 219


>gi|15893814|ref|NP_347163.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023387|gb|AAK78503.1|AE007567_5 Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507938|gb|ADZ19574.1| Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 228

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 90/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +      L   +G ++   ++           + D++ I+  L        
Sbjct: 4   IFLVEDDKAIAKNLTLLLRSEGFTVNHASTRSDAIGALDGNKFDLALIDISLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    VP+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEIKEKQDVPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGS 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +  E   + V +     + +G    L   E R+L   + N    + ++++   ++   
Sbjct: 122 SPSSFEICGLHVDTASGIVKKEGREIFLSALEYRLLLVFINNNKSIITRSRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+  N    + + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPEIILTVRGTGYRL 221


>gi|116750317|ref|YP_847004.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699381|gb|ABK18569.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 227

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +           G  +    +++    L+   R     +   L+  G    
Sbjct: 6   ILIVEDDSDILHLLAYNIEAAGFDV--VKAMDGNTALEMVRRHPPDLVVLDLMIPGIDGF 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + ++  ++    P+I ++        +   + G DD V KP   RE++ R+ AI RR
Sbjct: 64  EVCKELKRGAETRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAILRR 123

Query: 119 LKVSNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + V  +G    V G   PL   E ++L   +   GK + + Q+  
Sbjct: 124 SATDATEERIWRSEGLSVDFEGHKLTVDGAETPLTATEFKLLAEFVRTPGKVLTRDQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +        V++H+ +LR+KL      D V++ R +GY  
Sbjct: 184 RVW-AYQFEGYARTVDTHVRRLRRKLGPH--ADRVETVRGVGYRF 225


>gi|295815579|gb|ADG36299.1| SilR [Morganella sp. RP-42]
          Length = 226

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     + N ++  + +LR K+ N  G   + + R +GY ++
Sbjct: 181 DMS-FDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLE 222


>gi|268611080|ref|ZP_06144807.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 224

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G   +   + +  E +     ED   I   ++       
Sbjct: 4   ILIVDDEPNIVTLISRYAQREGY--DIVTASDGREAIDKCRSEDFDVIIMDVMMPDTDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+    +P+I +S   +    L  F+ GVDD V KP    E++AR+  I    + 
Sbjct: 62  TACKKIKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPMELMARIKVILSHSRN 121

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  ++++G      I + + G    V GE   L  +E  +L  L+ N+G  +++ +I + 
Sbjct: 122 AEQKSDSGKLTVSGIEIDTLGLTVTVNGEKADLTAKEYALLLLLVKNKGIVLSRDRILNE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D    +  V+  I  LR KL +    D + + R +GY  +
Sbjct: 182 VWG-YDSFGVDRTVDWQIKLLRSKLGDY--RDSIKTVRGVGYKFE 223


>gi|297201439|ref|ZP_06918836.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197713846|gb|EDY57880.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 234

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 100/236 (42%), Gaps = 29/236 (12%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++        DG ++    +G + LE         R D++ ++  +   G 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRAD----RPDIALLDVMVP--GL 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 62  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121

Query: 119 LK--------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                            +      G + + ++G +    G+   L   E R+L    +  
Sbjct: 122 FGHAGGTDRGEVSADAAAGGVLTFGELEIDTEGMEVRRAGQPVALTPTEMRLLLEFSSAP 181

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 182 GTVLSRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 232


>gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
           CDC1551]
 gi|13880147|gb|AAK44855.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
           CDC1551]
          Length = 247

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++                 D   ++  L   G    
Sbjct: 19  ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLP--GIDGF 76

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+  R+ R     P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 77  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 136

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G +R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 137 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 196

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              EA   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 197 AAYEAR-SNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 236


>gi|298252102|ref|ZP_06975905.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297546694|gb|EFH80562.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G S+    S +           D+  ++  L   G   L
Sbjct: 5   LLVVDDDPRITDLLRRILAYEGYSVAVATSGDDALKRTLERAPDLIVLDVMLP--GLNGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R A   VP++ ++   ++   +  F+ G DD V KP    E++AR+ A+ RR +
Sbjct: 63  EVVQRLRVAGDNVPILLLTARDTVADRVKGFEIGADDYVVKPFAPEELVARIKALLRRNQ 122

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V  +       +++ +  R          L   E  +L   +    + + +  I   ++G
Sbjct: 123 VERHEILHYADVQLDTGTRVAHRGPREIELSPTEYELLALFLRRPRQVLTRDVIMDRVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D     NV+E +I  LR  L        + + R +GY  
Sbjct: 183 L-DFEGSSNVLEVYIGYLRNMLEADGEARLIHTIRGIGYVF 222


>gi|255524870|ref|ZP_05391819.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511440|gb|EET87731.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 228

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 3/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G ++    +        +  + D++ I+  L        
Sbjct: 4   IFLVEDDKAIAKNLILLLRSEGFTVTHAPTRSEALAALAGNKFDLALIDISLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +    +    +P+I ++      + +   + G DD V KP   RE++AR+    R+   
Sbjct: 62  TVCTETKETQDIPVIFLTASGDESSVVTGLNMGADDYVTKPFRPRELIARIRTALRKSGC 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S + +E   + V       +  G    L   E R+L   + N    + + ++   ++   
Sbjct: 122 SPSASEICGLHVDMASGVVKKDGSEVFLSALEYRLLLVFINNPKSIITRARLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            E V +N +  +I +LR+K+  N      + + R  GY +  N
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPTSPQIILTVRGTGYRLGDN 224


>gi|168184914|ref|ZP_02619578.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182672034|gb|EDT83995.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 229

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G S+    +    E ++   + D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFQDQGYSV--ITASNGREAIEYCDK-DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QICQKIRDKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + ++   G + +  + R    + E      +E  I+E L  +  +  +K QI+  +
Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPQQVFSKEQIYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + N V  HI K+R K ++     + + +   +GY  + N
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWERN 227


>gi|325287848|ref|YP_004263638.1| winged helix family two component transcriptional regulator
           [Cellulophaga lytica DSM 7489]
 gi|324323302|gb|ADY30767.1| two component transcriptional regulator, winged helix family
           [Cellulophaga lytica DSM 7489]
          Length = 230

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         D   +       E    L      D+  ++  L       +
Sbjct: 4   ILIIEDDPEIIQLLEIHLTDMVYTTTKAMDGETGLNLALENDYDLILLDLTLPI--MDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R     P+I ++        +   + G DD + KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCKKLRIKKNTPVIMLTAKSEEIDRVLGLEIGADDYLTKPFSIRELLARIKAVLRRSDA 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + ++       + +  D R      +   L  +E  +L  + +N G+  ++T++ +
Sbjct: 122 PKVEENNSTTLNFEGLFIDIDKRKVLHNKQKIDLSPKEFELLVLMASNPGRNYSRTELLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            I+G ++    E+ V SHI++LR K+ + +     + +   +GY  +
Sbjct: 182 IIWG-YNFEGYEHTVNSHINRLRAKIESNMAQPMYILTTWGVGYKFN 227


>gi|310641768|ref|YP_003946526.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphop [Paenibacillus polymyxa SC2]
 gi|309246718|gb|ADO56285.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Paenibacillus polymyxa SC2]
          Length = 224

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 101/223 (45%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED---VSAIEAFLIGKGEK 59
           +++DD   +++          + LEG   +E  + L +    D   V  +   ++  G  
Sbjct: 5   LVVDDDPHIRE-----LVGHFLRLEGLEVVEAVDGLDAMRLFDETKVDLLVLDIMMPGMD 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             EL R +R  + +PL+ ++        +  F  G DD + KP     ++ARV A+ +R 
Sbjct: 60  GWELCRKLREQTDLPLLMLTAKGETSQIVKGFALGTDDYLVKPFDPMVLVARVKALLKRY 119

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++ ++     G + + SD  + +   +   LPR+E  +L  L +  GK   +  +   I+
Sbjct: 120 RIMASKSVTIGDLVLRSDTFECQAGEQGITLPRKEFELLFKLASYPGKTFTRDHLIEQIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +E  V+ HI +LR++         + + R LGY ++
Sbjct: 180 G-YDYEGDERTVDVHIKRLRERFPEATQSFAIRTIRGLGYRLE 221


>gi|270290038|ref|ZP_06196264.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Pediococcus acidilactici 7_4]
 gi|270281575|gb|EFA27407.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Pediococcus acidilactici 7_4]
          Length = 229

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  +N  E    L +     +  ++  +       
Sbjct: 3   ILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPE--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +R  S++P++ +S        +    +G DD V KP +  EI+ARV ++ RR +
Sbjct: 61  MQVVREVRKDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRSE 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +    + GP+ + SD  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 KDVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++   +  +    V  H+S LR K+     G   +++   +GY +
Sbjct: 181 ERVWQQ-ESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYKV 226


>gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 234

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +              +   ++      +      D   ++  L       +
Sbjct: 5   ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQ--LDGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  + IR    Q+P+I ++   S    +   + G DD + KP   +E+L+R+  I RR  
Sbjct: 63  EATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTD 122

Query: 121 VSNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + N AE  P      I +       +   E   L   E ++L YL  N  + +++ QI 
Sbjct: 123 RAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             ++G ++   +  +V+ HIS LR KL  +      + + R  GY
Sbjct: 183 EKVWG-YEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGY 226


>gi|167772673|ref|ZP_02444726.1| hypothetical protein ANACOL_04054 [Anaerotruncus colihominis DSM
           17241]
 gi|167665151|gb|EDS09281.1| hypothetical protein ANACOL_04054 [Anaerotruncus colihominis DSM
           17241]
          Length = 228

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
             LI+D   +++  +      G ++ GF +  +F + L       +  ++  L   GE  
Sbjct: 7   IYLIEDDESIRELVLYALESAGYAVRGFADGGQFWQALAEGETPGLILLDIMLP--GEDG 64

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L + R ++A    S  P+I ++   +    +   D G DD V KP    E+L+RV A+ R
Sbjct: 65  LTILRRLKASARLSDTPVIMLTAKAAEYDKVRGLDLGADDYVTKPFGVMELLSRVRAVLR 124

Query: 118 RLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +     A    G I + +  R     GE   L  +E  +L YLM N    +++ +I  
Sbjct: 125 RARPDAAAALCRCGGITLDAGRRVVTANGEAVTLTFKEFELLAYLMKNECIVLSREKIME 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD   E   V+ HI  LR+KL      + + + R +GY I
Sbjct: 185 RVWG-FDYEGESRTVDMHIKSLRQKLGPCG--ELIRTVRGVGYKI 226


>gi|109899149|ref|YP_662404.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109701430|gb|ABG41350.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 226

 Score =  224 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +      L    G S++  +      +L S    D++ I+  L        
Sbjct: 3   ILIVEDDSRLLTQLDTLLQTHGYSVDLADDGAKALFLLSEHPYDLAIIDIGLPV--MDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ +  R ++   P++ ++     Q  ++  D+G DD + KP  + E+LARV A+ RR  
Sbjct: 61  EVIQKARKNNVSCPILILTARDRWQEKVEGLDAGADDYLTKPFQNEELLARVKALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N   E GPI + +      V G    L   E ++ EYL+ N  K V+KT++   IY 
Sbjct: 121 GQANPTIELGPISLNTLSEQVSVSGTDIELTAYEYKVFEYLLLNPKKVVSKTELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  + +LRKKL  +   +P+++ R  GY I
Sbjct: 181 Q-DFDLDSNVIEVFVGRLRKKLDPQGSINPIETMRGRGYRI 220


>gi|332999989|gb|EGK19572.1| transcriptional regulatory protein qseB [Shigella flexneri K-218]
          Length = 219

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ A++ A+ RR  
Sbjct: 61  DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAAKLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|320094688|ref|ZP_08026444.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978373|gb|EFW09960.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 241

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +              + R D+  ++  L        
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFDVSTAEDGSSAFHEAQAVRPDLIVLDVMLPD--MDGF 74

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A    P++ ++    ++  +     G DD V KP    E++AR+ AI RR  
Sbjct: 75  TVTRRLRDAGLTTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 134

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++       G + +  D  + +  G    L   E ++L YL+ N G+ V+K QI   +
Sbjct: 135 GGDDEDGKLRVGDLVIDEDAHEVKRAGVDIDLSPTEFKLLRYLVINAGRVVSKMQILDHV 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+KL  +    + + +KR +GY +
Sbjct: 195 W-EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYIL 237


>gi|302870116|ref|YP_003838753.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503607|ref|YP_004082494.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302572975|gb|ADL49177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410226|gb|ADU08343.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 222

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D     D    +   +G  +    +             D+  ++  L        E+ 
Sbjct: 2   VEDEESFSDALSYMLRKEGFEVSVAATGPAALTEFDRTGADIVLLDLMLPE--MSGTEVC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    +N
Sbjct: 60  RQLRQRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSAESN 119

Query: 125 R-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   ++G
Sbjct: 120 ETGAPTLAAGPVRMDIERHVVTVGGAGVQLPLKEFELLELLLRNAGRVLTRGQLIDRVWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             D   +   ++ H+ +LR K+         + + R LGY  +
Sbjct: 180 A-DYVGDTKTLDVHVKRLRSKIEPEPSAPRYIVTVRGLGYKFE 221


>gi|229029585|ref|ZP_04185664.1| hypothetical protein bcere0028_16740 [Bacillus cereus AH1271]
 gi|228731707|gb|EEL82610.1| hypothetical protein bcere0028_16740 [Bacillus cereus AH1271]
          Length = 229

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++ +         G +++       E+ LQS   +D   +   ++  G    
Sbjct: 4   ILIIEDEAVIAELEKDYLEVAGYTVDI--DYSGEKGLQSVLLKDYDLLILDIMLPGIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQVRLKKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   +      + +    R   V G    L  +E  +L  +  +  +  +K ++F
Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G+ D   +   V  H+  +R K+  +      +++   +GY  
Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRHKIELDPFDKSYIETIWGVGYRF 227


>gi|229135507|ref|ZP_04264293.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
 gi|228647972|gb|EEL04021.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
          Length = 229

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL + A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-ESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 96/231 (41%), Gaps = 18/231 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +              ++   +      +  +   D+  ++  L        E
Sbjct: 5   LVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPE--MSGEE 62

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR   +  P+I ++   +    +   + G DD V KP   RE++AR+ A+ RR + 
Sbjct: 63  VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122

Query: 122 SNNRAE-------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           S   ++             TGP  +        V  +   L  +E  +++YL+ +  + +
Sbjct: 123 SEPSSQQNAAPVKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           ++ Q+   ++G FD + +  +V+  I+ LR+K+ +       + + R  GY
Sbjct: 183 SRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGY 232


>gi|218248415|ref|YP_002373786.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218168893|gb|ACK67630.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 635

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A               +++  N+ E    L      DV  ++  L       +
Sbjct: 3   ILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQ--LDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +R   +  P++ ++     +  +   ++G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V  +      + +     +   QG++  L   E  +LE  + +  +  ++  I   I+ 
Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           L     EE  + SHI  LR+KL+      + + +    GY +
Sbjct: 181 LDKVPGEE-TISSHIKALRQKLKAVGMTQNMIKTVYGFGYRL 221



 Score = 61.5 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 5/111 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD     +   A     G ++   ++ +    +  +   D+  ++  +       L
Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHF--SGL 567

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
            L + +R       VP++ +S +   ++       G D  + K I   E++
Sbjct: 568 NLCQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618


>gi|17230752|ref|NP_487300.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132355|dbj|BAB74959.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 238

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 92/226 (40%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    L      D+  ++  L        
Sbjct: 6   ILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFEQFNPDLVILDINLPDVI--GF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +++ + V ++ ++        +  F  G DD + KP    E+  RV AI RR +V
Sbjct: 64  NLCQEMQSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 123

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R+  +  +  PL   E  +L +L ++ G+   + ++   +
Sbjct: 124 VTTAEQKRLTFEKLMIDPVRREVTLNSQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++   ++ VV+ HI ++RKK+  +      + + R +GY  + 
Sbjct: 184 WD-YEYVGDQRVVDVHIGQIRKKIEVDASQPALIQTVRGVGYKFEC 228


>gi|15608173|ref|NP_215549.1| two component transcriptional regulator TRCR [Mycobacterium
           tuberculosis H37Rv]
 gi|31792225|ref|NP_854718.1| two component transcriptional regulator TRCR [Mycobacterium bovis
           AF2122/97]
 gi|121636963|ref|YP_977186.1| two component transcriptional regulator trcR [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148660816|ref|YP_001282339.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           H37Ra]
 gi|148822242|ref|YP_001286996.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis F11]
 gi|167968534|ref|ZP_02550811.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           H37Ra]
 gi|215402850|ref|ZP_03415031.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           02_1987]
 gi|215410638|ref|ZP_03419446.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426317|ref|ZP_03424236.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T92]
 gi|215429895|ref|ZP_03427814.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           EAS054]
 gi|215445184|ref|ZP_03431936.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T85]
 gi|218752706|ref|ZP_03531502.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis GM
           1503]
 gi|219556903|ref|ZP_03535979.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T17]
 gi|224989435|ref|YP_002644122.1| two component transcriptional regulator [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253799935|ref|YP_003032936.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363948|ref|ZP_04979994.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254550019|ref|ZP_05140466.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260185946|ref|ZP_05763420.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200062|ref|ZP_05767553.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T46]
 gi|260204253|ref|ZP_05771744.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           K85]
 gi|289442456|ref|ZP_06432200.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T46]
 gi|289446614|ref|ZP_06436358.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289569014|ref|ZP_06449241.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T17]
 gi|289573673|ref|ZP_06453900.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis K85]
 gi|289744771|ref|ZP_06504149.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           02_1987]
 gi|289749566|ref|ZP_06508944.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T92]
 gi|289753095|ref|ZP_06512473.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           EAS054]
 gi|289757118|ref|ZP_06516496.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T85]
 gi|289761171|ref|ZP_06520549.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis GM 1503]
 gi|294995222|ref|ZP_06800913.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           210]
 gi|297633562|ref|ZP_06951342.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
           4207]
 gi|297730547|ref|ZP_06959665.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
           R506]
 gi|298524531|ref|ZP_07011940.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306775170|ref|ZP_07413507.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu001]
 gi|306781915|ref|ZP_07420252.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu002]
 gi|306783731|ref|ZP_07422053.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu003]
 gi|306788086|ref|ZP_07426408.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu004]
 gi|306792419|ref|ZP_07430721.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu005]
 gi|306796821|ref|ZP_07435123.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu006]
 gi|306802708|ref|ZP_07439376.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu008]
 gi|306967087|ref|ZP_07479748.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu009]
 gi|306971277|ref|ZP_07483938.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu010]
 gi|307079006|ref|ZP_07488176.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu011]
 gi|307083567|ref|ZP_07492680.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu012]
 gi|313657876|ref|ZP_07814756.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
           V2475]
 gi|1869995|emb|CAB06846.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium
           tuberculosis H37Rv]
 gi|2979514|gb|AAC06144.1| response regulator homolog TrcR [Mycobacterium tuberculosis]
 gi|31617813|emb|CAD93922.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium bovis
           AF2122/97]
 gi|121492610|emb|CAL71078.1| Two component transcriptional regulator trcR [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|134149462|gb|EBA41507.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504968|gb|ABQ72777.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           H37Ra]
 gi|148720769|gb|ABR05394.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis F11]
 gi|224772548|dbj|BAH25354.1| two component transcriptional regulator [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253321438|gb|ACT26041.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415375|gb|EFD12615.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T46]
 gi|289419572|gb|EFD16773.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289538104|gb|EFD42682.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis K85]
 gi|289542768|gb|EFD46416.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T17]
 gi|289685299|gb|EFD52787.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           02_1987]
 gi|289690153|gb|EFD57582.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T92]
 gi|289693682|gb|EFD61111.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           EAS054]
 gi|289708677|gb|EFD72693.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis GM 1503]
 gi|289712682|gb|EFD76694.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T85]
 gi|298494325|gb|EFI29619.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216318|gb|EFO75717.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu001]
 gi|308325370|gb|EFP14221.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu002]
 gi|308331512|gb|EFP20363.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu003]
 gi|308335318|gb|EFP24169.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu004]
 gi|308339126|gb|EFP27977.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu005]
 gi|308342797|gb|EFP31648.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu006]
 gi|308350622|gb|EFP39473.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu008]
 gi|308355255|gb|EFP44106.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu009]
 gi|308359209|gb|EFP48060.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu010]
 gi|308363111|gb|EFP51962.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu011]
 gi|308366776|gb|EFP55627.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu012]
 gi|323720534|gb|EGB29616.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904738|gb|EGE51671.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis W-148]
 gi|328459679|gb|AEB05102.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 4207]
          Length = 257

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  +E  +  +           DV  ++  L       LE
Sbjct: 35  LLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDV--DGLE 92

Query: 63  LPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           + R +R  S V  P + ++   S+   +    SG DD + KP    E++AR+  + RR  
Sbjct: 93  ILRRVRE-SDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 151

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++     G + +    R+    G    L   E  +L +LM N  + +++T+I   
Sbjct: 152 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 211

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D A   ++V+ +IS LRKK+ +      + + R +GY +
Sbjct: 212 VWN-YDFAGRTSIVDLYISYLRKKIDSDREP-MIHTVRGIGYML 253


>gi|240145086|ref|ZP_04743687.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257202757|gb|EEV01042.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|291537822|emb|CBL10933.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          DG  +  F +   +E L+    +D+  +   ++      +
Sbjct: 4   ILVCDDEKDIVSALKIYLMADGYQV--FEAYNGKEALEVLKEQDIHLVLMDIMMPEMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  S VP+I ++        +     G DD + KP +  E+ ARV +  RR   
Sbjct: 62  AAMVKIRETSNVPVILLTAKSEDTDKVLGLTVGADDYITKPFNPIEVQARVKSQLRRYMQ 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +  +    G I +    ++  + GE   L R E  IL+ LM + G+  +  QI+ 
Sbjct: 122 LGGGAIRKDVLSIGGIELDDRSKEVSLDGEKISLTRTEYDILKLLMEHPGEVFSPNQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   +    EN V  HI  LR+K+  N      +      GY ++
Sbjct: 182 QVW-QDNPYGTENTVAVHIRHLREKVEYNPAEPRYLKVVWGRGYKME 227


>gi|261855398|ref|YP_003262681.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261835867|gb|ACX95634.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 226

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G S++   +      L  +   D   ++  L   G   L
Sbjct: 3   LLLVEDDVQAATYLAKGLEESGHSVDRAANGTDGLHLAMTGEYDALIVDRMLP--GLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L    RA  +  P++ +S    +   +    +G DD + KP    E+LAR+ A+ RR++
Sbjct: 61  GLIAAYRAAGRATPVLILSARGEVDDRVTGLKAGGDDYLTKPYAFSELLARIEALTRRMQ 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S++      + +         + +   L  RE R+L+YLM + G+ V +T +   ++
Sbjct: 121 TRDSSDTLAVADLVLDRVRHKVMRRDQPILLQPREFRLLDYLMRHAGQVVTRTMLLEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 G-YHFDPQTNVIDVHISRLRSKIDRDFDTPLLHTVRGAGYVL 221


>gi|225375459|ref|ZP_03752680.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
 gi|225212656|gb|EEG95010.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   +E LQ    ++   +   ++  G    
Sbjct: 4   ILIIDDDKELCTLIKRSVQAENIEADFCNT--GKEGLQKLREQEYQLVVLDVMMPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 62  ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N +           +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNQQAGAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 227


>gi|213158597|ref|YP_002319895.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|301344826|ref|ZP_07225567.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB056]
 gi|301596622|ref|ZP_07241630.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB059]
 gi|213057757|gb|ACJ42659.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB0057]
          Length = 223

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L     +  
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPD--IEGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+  +     + + R LGY I
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDEEYEPKLIHTIRGLGYKI 219


>gi|158340812|ref|YP_001521980.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
           [Acaryochloris marina MBIC11017]
 gi|158311053|gb|ABW32666.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
           [Acaryochloris marina MBIC11017]
          Length = 792

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  LV +    L  D   ++E     +    L  +   D+   +  L       +
Sbjct: 3   ILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPR--LDGV 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R+   Q+P++ ++   S        D+G DD V KP    E+ ARV A+ RR +
Sbjct: 61  GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   +++     + + Q  +  L  +E  ++E +M N  +  +   I   I+ 
Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D   EE  V +HI  LR+KL+      D +++   +GY +
Sbjct: 181 YEDTPGEE-AVRTHIKGLRQKLKASGAPTDLIETVYGIGYRL 221



 Score = 87.7 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 80/199 (40%), Gaps = 23/199 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   AL    G+ + G +         +++  D+  ++  +   G   +
Sbjct: 490 IMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIG--GI 547

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTL-DFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +L R++R      Q+P+I ++ + +    +   + SG DD ++KPI   E++ R+     
Sbjct: 548 DLCRVVRNDIQWEQLPIIFLTAH-TEADVVNQVYASGADDFISKPIVGPELVVRILNRLE 606

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK-----RVAKTQ 172
           R ++    +      +    R          L      +L   +A++ +      +   +
Sbjct: 607 RTRLQRRLS-----TIDPLARVLSRHESTHAL-----ELLLSEVAHQPRSMCLVILEIER 656

Query: 173 IFSAIYGLFDEAVEENVVE 191
           +   I   F  AV ++++ 
Sbjct: 657 L-QQINDCFGYAVGDSILR 674


>gi|88807098|ref|ZP_01122610.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788312|gb|EAR19467.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 248

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++                  D+  ++  +        
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALTCFQECEPDLVVLDVMMP--KLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEK 128

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N          +   +++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 ENAAGIPNSGMIKVSDLKIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|331085549|ref|ZP_08334633.1| hypothetical protein HMPREF0987_00936 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407436|gb|EGG86938.1| hypothetical protein HMPREF0987_00936 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 226

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 102/225 (45%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D + +++  +      G+   GF          +    ++  ++  L   GE  
Sbjct: 1   MIYCVEDDSNIRELVVYTLESTGMKACGFPDGTAFMKALAFETPELVLLDIMLP--GEDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + L + ++       +P+I ++   +    +   DSG DD V KP    E+++RV A+ R
Sbjct: 59  ISLLKKLKSSAKTKDIPVIMVTAKGAEYDKVIGLDSGADDYVTKPFGMMELISRVKAVLR 118

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K    + + E   + +     +  V G    L  +E  +LE L+ N+   +++ ++  
Sbjct: 119 RTKREEKSTKYEIRNLILDQKKHEVRVDGIPVTLTLKEFELLELLIRNKNIVLSRDRLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D   E   ++ HI  LR+KL++    D +++ R +GY +
Sbjct: 179 EVWG-YDFDGETRTIDVHIRTLRQKLKSAG--DLIETVRGVGYRM 220


>gi|295102996|emb|CBL00540.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 233

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    ++  S I   ++       +
Sbjct: 5   LIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTYSLIILDVMMPDMNGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR  + VP++ ++     +  +     G DD + KP    E++ARV ++ RR    
Sbjct: 65  VLQKIREKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELIARVNSLIRRYTTL 124

Query: 121 --VSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             V+ N A T  +R   +    R   VQ     L  +E  +L +L +N+G+   K Q+++
Sbjct: 125 NPVTGNEAATMLLRDMVIDKINRTVMVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQLYT 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            ++   +   ++N + + ISKLRKK+         + + R +GY  +
Sbjct: 185 QVW-TEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFN 230


>gi|225374967|ref|ZP_03752188.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
 gi|225213219|gb|EEG95573.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   +E LQ    ++   +   ++  G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAENIEADFCNT--GKEGLQKLREQEYQLVVLDVMMPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR    +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 62  ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N +           +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNQQAGAIQKLNFNGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 227


>gi|167629726|ref|YP_001680225.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592466|gb|ABZ84214.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 234

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V          +G  +   +  +           ++  ++  L        
Sbjct: 4   ILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPD--MDGS 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  +  P+I ++   +    +  F  G DD + KP    E+ ARV A+ RR + 
Sbjct: 62  EVLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEG 121

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +++  E           G + +  D  + +V+G V  L  +E  +L+YL     + V   
Sbjct: 122 THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIA 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           QI+ +++G  +   ++N V  HIS+LR K+  +      + + R LGY +
Sbjct: 182 QIYESVWGK-EFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRL 230


>gi|222055094|ref|YP_002537456.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221564383|gb|ACM20355.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 226

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 99/230 (43%), Gaps = 19/230 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   + +        +G     +L+G   LE           D+  ++  L   G
Sbjct: 4   ILVIEDERDLAELIAFNLEKEGHRPLIALDGLVGLEAA----RKNPPDLILLDLMLP--G 57

Query: 58  EKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
               E+ +I++     + +P+I ++        +  F+ G DD + KP   RE++ RV A
Sbjct: 58  MAGTEICKILKGNGKTASIPVIMLTAKGEEIDRVVGFEVGADDYIVKPFSTRELMLRVKA 117

Query: 115 IYRRLKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + RR      R      GP+ + ++     V  +   L   E ++L  L    G+  ++ 
Sbjct: 118 LLRRTLPEQPRKKVFSVGPVSIDTERHLVTVADKEILLTTIEYKLLLDLAERAGRVQSRD 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   ++G ++   +   V++H+++LR KL +    D + + R  GY I+
Sbjct: 178 ILLQNVWG-YNYVGDSRTVDTHVTRLRTKLGSAG--DMIKTVRGFGYKIE 224


>gi|108798410|ref|YP_638607.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119867507|ref|YP_937459.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108768829|gb|ABG07551.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119693596|gb|ABL90669.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 265

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +   +    +        +      +      DV  ++  L   G   LE
Sbjct: 35  LVVDDEAPLAEVVASYLEREHFEAIVTGNGADAITIARELDPDVVILDIGLP--GIDGLE 92

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD + KP   RE++AR+ A+ RR ++ 
Sbjct: 93  VCRQLRTFSDAYVVMLTARDTEMDTILGLTVGADDYITKPFSPRELVARIRAMLRRPRIQ 152

Query: 123 NNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            + A             G + +    R+  +  E   L R E  ILE L A  G  +++ 
Sbjct: 153 QSAAAATEREAVPPRRFGALIIDVAAREVHIDDEPILLTRTEFDILEALSARPGIVLSRR 212

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  LR+KL  +      + + R +GY +
Sbjct: 213 QLLEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAANPRYITTVRGVGYRM 261


>gi|237802299|ref|ZP_04590760.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331025156|gb|EGI05212.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 224

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPE--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R      ++ ++    L+  +   + G DD + KP    E+LARV  + RR + 
Sbjct: 61  EVLTRLRKTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|229172538|ref|ZP_04300097.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3]
 gi|228611009|gb|EEK68272.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3]
          Length = 229

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++ +         G +++       E+ LQ    ED   +   ++  G    
Sbjct: 4   ILIIEDEAIIAELEKDYLEVAGYTVDI--DYSGEKGLQRVLLEDYDLLILDIMLPGIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQVRLEKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++  +      + +    R   V G    L  +E  +L  +  +  +  +K ++F
Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G+ D   +   V  H+  +R+K+  +      +++   +GY  
Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227


>gi|219556445|ref|ZP_03535521.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis T17]
          Length = 289

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 83/215 (38%), Gaps = 5/215 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++                 D   ++  L   G    
Sbjct: 3   ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLP--GIDGF 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+  R+ R     P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 61  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G +R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 121 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
              EA   N+V+ +I  LR K+    G   +++ R
Sbjct: 181 AAYEAR-SNIVDVYIRYLRDKIDRPFGVTSLETIR 214


>gi|157429040|gb|ABB99942.2| hypothetical protein pCT0024 [Listeria monocytogenes]
          Length = 226

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +  S+  + ++     L+   + +   +   L+      L
Sbjct: 3   ILIVDDEEKILEIIDAYLVANHYSV--YKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        L     G DD + KP   +E++AR+  + RR + 
Sbjct: 61  TVCRKIREISNVPIIMLTAKSDEDDILTGLKLGADDYMLKPFSPKELVARIQTVLRRTET 120

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N     +    + V+ D R   +      L   E  IL  LM+   K  +++ +   +
Sbjct: 121 LSNPNKLSSNNKELIVYPDSRQVYLHQVELNLTTTEFDILHALMSTPNKVFSRSDLIEKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            G+ +    +  ++SHI  LR K+ N       + +    GY  
Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223


>gi|325684936|gb|EGD27080.1| response regulator [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 228

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  +N  E    L ++    +  ++  +       
Sbjct: 3   ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPN--LSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  S +P+I +S        +    +G DD V+KP +  E++ARV ++ RR +
Sbjct: 61  IDVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 120

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   V+G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 KQVKEEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 181 ERVWQQ-ESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGYKVE 227


>gi|295091969|emb|CBK78076.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 228

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAI---EAFLIGKG 57
           +  + +D   +++         G     F + E        A+ D+ ++   +  L   G
Sbjct: 4   LIYVTEDDENIRNLICVALESFGYQTRSFETAEEALEAVKEAQGDLPSLFVFDWMLP--G 61

Query: 58  EKVLELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              +     ++A     ++P++ ++   S    +   D G DD + KP    E  AR+  
Sbjct: 62  MDGMAAVGKLKAAAETKKIPVMMLTAKDSELDVVAGLDGGADDYMTKPFGILEFSARIRN 121

Query: 115 IYRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + +R    K        G I +  + R+  ++G+   L  +E  +L YLM N  + V + 
Sbjct: 122 LLKRFSDDKQEGKNLSVGDISIDLEKREVRMRGQEVELTLKEYELLCYLMENTSRVVTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   I+G +D   E   ++ HI  LR+KL        + + R +GY I
Sbjct: 182 ELLDRIWG-YDYDGETRTLDMHIKTLRQKLGEAGHS--IKTVRGVGYRI 227


>gi|238854407|ref|ZP_04644749.1| regulatory protein VanR [Lactobacillus jensenii 269-3]
 gi|260665098|ref|ZP_05865948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282931811|ref|ZP_06337296.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|313473003|ref|ZP_07813490.1| DNA-binding response regulator [Lactobacillus jensenii 1153]
 gi|238833029|gb|EEQ25324.1| regulatory protein VanR [Lactobacillus jensenii 269-3]
 gi|239528791|gb|EEQ67792.1| DNA-binding response regulator [Lactobacillus jensenii 1153]
 gi|260561152|gb|EEX27126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281304118|gb|EFA96235.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
          Length = 228

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  ++  E    + ++    +  ++  +   G   
Sbjct: 3   IIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMP--GITG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  S +P+I +S        +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  IDVIKELRKDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQ 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G V  L   E  IL  L ++  +  +  +IF
Sbjct: 121 KKVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|319653627|ref|ZP_08007726.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
 gi|317394826|gb|EFV75565.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
          Length = 229

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +    +   + +        +   +  ++  L        
Sbjct: 4   ILIIEDELNIAELERDYLELNHYEADIAATGQEGLERLKQSSYRLVLLDLMLPD--MDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  S++P+I ++        +     G DD + KP +  +++ARV A   R   
Sbjct: 62  EICRQIREISEIPIIMVTAKNEEIDMIRGLGRGADDYIAKPFNPNQLIARVKAHIARFDR 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +          + +    R   V  +   L  +E  +L ++ ++  +  +K  + 
Sbjct: 122 LVSRGQNKEEDMRIRGLHIQPVTRKVFVNSQEKVLTAKEFDLLLFMASSPNQVFSKEHLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G FD   +   V  HI +LR+K+  +    D +++   +GY  
Sbjct: 182 EQVWG-FDFYGDVTTVTVHIRRLREKIEKDPSDPDYIETVWGVGYRF 227


>gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
 gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7]
 gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
 gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7]
          Length = 223

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G  +   ++ E    +  +   D+  I+  +        E
Sbjct: 6   LVVDDEKDIRELINFYLNKEGFEVLEASNGEEALEIFENEYIDLGIIDVMMPV--MDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L   ++    VP+I ++     +  L  F  G DD V KP    E++ARV A+ +R  V 
Sbjct: 64  LVENLKEFKDVPVIMLTAKGESKDKLRGFSVGADDYVVKPFDPTELMARVRAVLKRYSVN 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++N  +   +    D  +   Q E+  LP ++  ++  L  +  +  ++ Q+   I+G+ 
Sbjct: 124 TSNIIKLNEVEFDGDKYEIRYQSEIIHLPLKQFELVFELAKHPDQIFSREQLIEKIWGM- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D    +  V+ HI ++R+ L +  GF  V + R LGY ++ 
Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFKVV-TVRGLGYKVEV 222


>gi|126731908|ref|ZP_01747712.1| two component response regulator [Sagittula stellata E-37]
 gi|126707735|gb|EBA06797.1| two component response regulator [Sagittula stellata E-37]
          Length = 226

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D     D       + G  ++     +  E L      D        +  G   L
Sbjct: 3   ILLAEDDPKSADYICKGLKEQGFVVDW--VADGREALTYCLYNDADLAIVDRMMPGMDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA  S +P+I ++    +   +D   +G DD + KP H  E+LAR+  + RR K
Sbjct: 61  SLVKALRAAKSNLPVIFLTALSDVDDRVDGLMAGGDDYLVKPFHLSELLARITVLGRRPK 120

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S           +++    R  + QG    L  +E  +L+  M N G+  ++T I   I
Sbjct: 121 QSTQEPTELVVHDLKLNLLTRQAQRQGRNIDLLGKEFSLLQLFMENPGRIFSRTLILEKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  F+      VVE+H+SKLR+K+        + + R +GY+I
Sbjct: 181 WD-FNFDPGTTVVETHVSKLRQKVDKPFDVALIHTVRNMGYTI 222


>gi|51892179|ref|YP_074870.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855868|dbj|BAD40026.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 234

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 94/231 (40%), Gaps = 18/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +++DD   +          +G  +    +G  +LE    +    + D+  ++  L    
Sbjct: 10  ILVVDDDPKILKALDQALQQEGYEVYRAEDGLQALE----MARKVKPDLMILDIMLP--K 63

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+   +++   VP + +S        +  F+ G DD + KP    E+L RV AI R
Sbjct: 64  MDGFEVLAQLQSTGGVPTLILSARGEEMDKVVGFNVGADDYLVKPFRLSELLLRVRAILR 123

Query: 118 RLKVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R   +      +   +   I +    R   V+G+   L  +E  +L  L ++ G   ++ 
Sbjct: 124 RTAGAGAPVDEDRPLKFRDIEINRSSRTVIVRGQPVDLTPKEFDLLWLLASHPGHVFSRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            +   ++   + + +E  +   + +LR+K+ R+    + + +   +GY  D
Sbjct: 184 ALLQRVW-HSEYSGDEAALTVCVRRLREKIERDPGHPELIKTIWGIGYKFD 233


>gi|75759474|ref|ZP_00739566.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493049|gb|EAO56173.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 232

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 12  LLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMP--GMDGF 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 189 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 229


>gi|219667342|ref|YP_002457777.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537602|gb|ACL19341.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 234

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +      +   +   L   ++ E           D+  ++  L        E
Sbjct: 8   LLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL--IDGYE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R IR  S+VP++ +S    +      F+ G DD + KP    E+  RV A+ RR    
Sbjct: 66  VCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFDK 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      +   G + +  +  +  V+G+   L  +E  +L ++  +  +   + Q+
Sbjct: 126 EQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           F+ ++   +   + + +   I KLR+K+ R+      + +   +GY  
Sbjct: 186 FAHMW-RDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232


>gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076465|gb|ADJ65864.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 218

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 9/218 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  +V +        DG +++     +  +    +    +  ++  L  K    L 
Sbjct: 4   LLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQK--DGLA 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +R     +P++  +   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  VLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  +   + +     +  V G+   L  RE  +L+  M   G  +++ Q+   +YG 
Sbjct: 122 RAESLVQVREVILNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +D+++E N VE HI  LRKK    +G D + + R +GY
Sbjct: 181 WDDSIESNAVEVHIHALRKK----VGSDFIKNVRGVGY 214


>gi|260584965|ref|ZP_05852709.1| DNA-binding response regulator SrrA [Granulicatella elegans ATCC
           700633]
 gi|260157395|gb|EEW92467.1| DNA-binding response regulator SrrA [Granulicatella elegans ATCC
           700633]
          Length = 236

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 103/234 (44%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +G + E ++  +  ++ ++    + D+  ++  L      
Sbjct: 3   ILMIEDTEAVCEMMEMFFEKEGWTAEFYHDGKEGYDAFVNHQDKWDLVILDLNLPS--MD 60

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++ R IR  + QVP++ ++   S    +   + G DD V KP     ++AR+ A++RR
Sbjct: 61  GMQICRQIRQMNEQVPIVMLTARDSESDQVIGLEIGADDYVAKPFSPLTMMARIKALHRR 120

Query: 119 LKVSNNR----------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKR 167
           +    +            ET  + + +   +  + G     L  +E  +L  +  +  + 
Sbjct: 121 IGRGISSETPTNSGQFDIETKHVSINTRTHEAFIDGVKIDGLTPKEFDLLVLMAQHPRQV 180

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  + + I+       +E  +++HI KLR+K+   +G   + +   +GY  D
Sbjct: 181 FSREHLLTKIW-EDPFYGDERTIDAHIKKLRQKIE-AVGPHVIQTVWGVGYKFD 232


>gi|167746354|ref|ZP_02418481.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
 gi|167654347|gb|EDR98476.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
          Length = 245

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +G  +   +N LE  + L     +D+  +   ++  G   
Sbjct: 16  ILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLV---EQDIQLLIIDIMMPGMDG 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L     IR    +P+I +S        +     G DD V+KP    E++ARV +  RR  
Sbjct: 73  LSATMKIRESKNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRRYL 132

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      NNR   G + +  DG+   V GE   +   E +IL  LM + G+  +  
Sbjct: 133 QLGSKAAGPEDNNRLILGGLTLDLDGKCIYVDGEPVKVTATEFKILNLLMRHPGRVFSAE 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +I+  ++     A E N V  HI ++R+K+  +      +     +GY ++
Sbjct: 193 EIYERVWEEAAYATE-NTVMVHIRRIREKIEIDPKNPKYLKVVWGIGYKME 242


>gi|116692892|ref|YP_838425.1| DNA-binding response regulator CreB [Burkholderia cenocepacia
           HI2424]
 gi|162218070|ref|YP_623436.2| DNA-binding response regulator CreB [Burkholderia cenocepacia AU
           1054]
 gi|170737842|ref|YP_001779102.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116650892|gb|ABK11532.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169820030|gb|ACA94612.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 237

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +   G DG+        +           D+  ++  L        
Sbjct: 6   ILIVEDEQAIADTIVYALGTDGMQTVHCTLAQAALDRLRDTHVDLVVLDVGLPD--LSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  + +P+I ++        +   + G DD V KP   RE+ ARV  I RR   
Sbjct: 64  EVCRRLRTFTDIPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRFHR 123

Query: 122 S-------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +                       + +DG      G    L R E  ++  L+ + G+  
Sbjct: 124 TAAPEPAPAPASADAPAPVASGFTLDTDGARVSWLGHALDLTRYEFGLMVLLVRHPGRIY 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++ Q+   ++    ++ +   V++HI  LR KLR      DP+ + R +GYS+
Sbjct: 184 SREQLMDLVWHEALDSAD-RTVDTHIKTLRAKLRAIDPERDPIRTHRGMGYSL 235


>gi|186684226|ref|YP_001867422.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466678|gb|ACC82479.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 241

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    L      D+  ++  L        
Sbjct: 8   ILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALALFEQFNPDLVILDVNLPDV--TGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +++ + V ++ ++        +  F  G DD + KP    E+  RV AI RR +V
Sbjct: 66  NLCQEMQSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 125

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R+  +  +  PL   E  +L +L ++ G+   + ++   +
Sbjct: 126 ITTAEQKRLVFEKLMIDPVRREVALNNQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++   ++ VV+ HI ++RKK+  +      + + R +GY  +
Sbjct: 186 WD-YEYVGDQRVVDVHIGQIRKKIEIDASQPALIQTVRGVGYKFE 229


>gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
 gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G ++      +    L      D   ++  L       +
Sbjct: 4   ILVVDDETSISTLLKYNLEQNGYTVTVAADGQTAYELIGKQNFDAILLDLMLPV--MDGM 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR      P+I ++        +   + G DD + KP   RE++AR+ A+ RR +
Sbjct: 62  TVLKTIRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQ 121

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V ++ +E         + +  + +      ++  L  RE  +L Y     G+ + +  I 
Sbjct: 122 VDHHESERTDAIKIQNLVIDDNKKVVTKNDKILTLTPREYELLLYFSQRVGRVIDRETIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +A++G ++   E  +V+ HIS LR+K+  N    + + + R  GY++
Sbjct: 182 TAVWG-YEFVGESRMVDMHISNLREKIETNPKSPEVLKTVRGFGYTM 227


>gi|251795531|ref|YP_003010262.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543157|gb|ACT00176.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 239

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 13/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G      +              D+  ++  L   G    E
Sbjct: 6   LVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLP--GLNGFE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R +  + P+I ++   + +  +     G DD + KP    E+LARV+A+ RR + 
Sbjct: 64  ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S      G + ++ +  +  + GE  PL  +E  +L YL+   G  + +  +
Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G FD    +  V+ H+S LRKKL        ++S R +GY +
Sbjct: 184 MNVVWG-FDYIGGQRTVDVHVSSLRKKLE-LGQSVQIESIRGVGYKL 228


>gi|6862579|gb|AAD30119.2| DNA binding response regulator RpaB [Tolypothrix sp. PCC 7601]
          Length = 233

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 11/223 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +DD A ++          G  +    + + EE L++  + D   +   ++        + 
Sbjct: 2   VDDEASIRRILETRLSMIGYDV--VTAGDGEEALETFRKADPDLVVLDVMMPKLDGYGVC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR+     
Sbjct: 60  QELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTSA 119

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S+       I++ ++ R      E   L   E  +LE L++  G+  ++++I   +
Sbjct: 120 SGIPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEV 179

Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           +G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 180 WGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 222


>gi|325962246|ref|YP_004240152.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468333|gb|ADX72018.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 236

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    +         +   D++ ++  L        
Sbjct: 10  LLVVDDEPNIRELLSTSLRFAGFDVVSAANGRDALAAADAHAPDLAVLDVMLPD--MDGF 67

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++     +  +     G DD V KP    E++AR+ A+ RR +
Sbjct: 68  TVTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 127

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  +    G V  L   E ++L YLM N  + ++K+QI   +
Sbjct: 128 PLLDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++   + ++VES+IS LR+K+  +      + +KR +GY +
Sbjct: 188 W-EYNFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVL 230


>gi|218551391|ref|YP_002385183.1| DNA-binding transcriptional regulator BasR [Escherichia fergusonii
           ATCC 35469]
 gi|218358933|emb|CAQ91593.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia fergusonii ATCC 35469]
 gi|325499660|gb|EGC97519.1| DNA-binding transcriptional regulator BasR [Escherichia fergusonii
           ECD227]
          Length = 229

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 9   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQFLESGHYSLVVLDLGLPD--EDGL 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                IR      P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 67  HFLARIRQKKHTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 126

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G +++    R   +  E   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 127 TQGESELNIGNLKLIMGRRQVWMGNEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR K+    G + + + R  GY +
Sbjct: 187 -WDNEPSTNTLEVHIHNLRDKI----GKERIRTVRGFGYML 222


>gi|16329558|ref|NP_440286.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1652041|dbj|BAA16966.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 245

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +    N  E    +      D+  ++  L       L
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLP--KLDGL 71

Query: 62  ELPRIIRAH--SQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   IR    S+ P ++ ++        +    +G DD + KP   RE++ARV A+ RR
Sbjct: 72  EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131

Query: 119 L----KVSNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAK 170
                +       T   +V  D          + E   L   E  +L   M+  G+   +
Sbjct: 132 QLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNR 191

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           TQ+   ++G  D   +E VV++HI +LRKK+  +      + +   LGY  +
Sbjct: 192 TQLIEKLWGN-DFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242


>gi|17548710|ref|NP_522050.1| response regulator for cobalt zinc cadmium resistance transcription
           regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430959|emb|CAD17640.1| probable response regulator for cobalt zinc cadmium resistance
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 224

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G   +   S     +       D+  ++  L   G    
Sbjct: 3   LLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLP--GMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++ R +R     P++ ++    L   L   + G DD + KP    E++ARV  I RR   
Sbjct: 61  QVIRELRRRKTTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGPM 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E   + + +  R     G    L  +E  +L  L    G+ ++++ I S ++ +
Sbjct: 121 RESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + + R +GY +D
Sbjct: 181 -NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLD 220


>gi|161830121|ref|YP_001597079.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
 gi|161761988|gb|ABX77630.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
          Length = 223

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + DG  A     G +++     +    + SS  E    I   L       L+
Sbjct: 4   LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + IR  +   P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR K 
Sbjct: 64  VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRRSKE 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G I +        ++ +   + RRE  +L+ L+ N G+ +++ Q+   +YG 
Sbjct: 124 RAKPIISHGDITLDPASHVVTLKKKEVMVARREFALLQKLLENAGRVISREQLNQTLYG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E ++ N +E HI  LRK+     G   + + R +GY ++
Sbjct: 183 WGENIDSNALEVHIHNLRKR----FGAKLIRTIRGVGYMVE 219


>gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 225

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 103/219 (47%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +  +++     E   ++  +   DV  ++  L        E
Sbjct: 6   LVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVH--DGWE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +R +    P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR  +
Sbjct: 64  ILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSE 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + +   G + + +  +     G+   L ++E +ILEYL+ N+ + V K ++   ++  
Sbjct: 124 SKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLW-S 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD+ V  +V+ SHI  LRKK+        + + R +GY 
Sbjct: 183 FDDEVFSDVLRSHIKNLRKKVDKGFKRKIIHTVRGIGYV 221


>gi|283797816|ref|ZP_06346969.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1]
 gi|291074501|gb|EFE11865.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1]
          Length = 228

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAI---EAFLIGKG 57
           +  + +D   +++         G     F + E        A+ D+ ++   +  L   G
Sbjct: 4   LIYVTEDDENIRNLICVALESFGYQTRSFETAEEALEAVKEAQGDLPSLFVFDWMLP--G 61

Query: 58  EKVLELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              +     ++A     ++P++ ++   S    +   D G DD + KP    E  AR+  
Sbjct: 62  MDGMAAVGKLKAAAETKKIPVMMLTAKDSELDVVAGLDGGADDYMTKPFGILEFSARIRN 121

Query: 115 IYRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + +R    K        G I +  + R+  ++G+   L  +E  +L YLM N  + V + 
Sbjct: 122 LLKRFSDDKQEEKNLSVGDISIDLEKREVRMRGQEVELTLKEYELLCYLMENTSRVVTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   I+G +D   E   ++ HI  LR+KL        + + R +GY I
Sbjct: 182 ELLDRIWG-YDYDGETRTLDMHIKTLRQKLGEAGHS--IKTVRGVGYRI 227


>gi|218661396|ref|ZP_03517326.1| two-component response regulator protein [Rhizobium etli IE4771]
          Length = 251

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ S    DV  I+  L  +    L
Sbjct: 29  ILIIEDDLEAAAYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRR--DGL 86

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 87  SVISELRRKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 147 TPEQDVIYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 207 D-YHFDPQTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 247


>gi|322383169|ref|ZP_08056991.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152712|gb|EFX45343.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 225

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 11/223 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +I+D   + +        DG                S+ + D+  ++  L   G    E+
Sbjct: 2   IIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLMLP--GIDGYEI 59

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--- 120
            R IR  ++VP++ ++        +     G DD ++KP    E++ARV A   + +   
Sbjct: 60  CRKIRGKTEVPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYERLT 119

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V +   + GP+R+        +         +E  +L +L++N     +K Q++  
Sbjct: 120 TGSVVRSEEVQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLYER 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           I+G+ D   +   V  HI++LR+K+  +      + +    GY
Sbjct: 180 IWGM-DAIGDLKTVAVHINRLREKIEKDPQNPVYIQTVWGTGY 221


>gi|254784803|ref|YP_003072231.1| PhoB family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237686809|gb|ACR14073.1| transcriptional regulatory protein PhoP [Teredinibacter turnerae
           T7901]
          Length = 225

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++      F      ++     E   W       D + I+  L       +E
Sbjct: 4   LIVEDEAAIRQQLTDYFSSQNFVIDAVADGEEGAWQAVEYDYDFAVIDLGLP--KLDGME 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA   + P++ ++     Q  ++  ++G DD + KP H+ E+ AR  A+ RR   
Sbjct: 62  IIRRLRAAGKKYPVLILTARGHWQDKVEGLEAGADDYLVKPFHNEELRARANALIRRAAG 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S   + + GPI + +  +   V      L   E   LEYL  + GK V+KT++   +Y  
Sbjct: 122 SATPQLQFGPIAIDTAQKRVLVSNVAIELTSYEYNTLEYLALHAGKPVSKTELTEHLYHQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + NV+E  I +LRKKL       P+ + R  GY  
Sbjct: 182 -DFERDSNVIEVFIGRLRKKLDPDNQLKPISTIRGQGYRF 220


>gi|218895625|ref|YP_002444036.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218544951|gb|ACK97345.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 3   LLVVEDNTSLLESIVQILCDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMP--GMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 232

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G  +    S E           D+  ++  L   G    
Sbjct: 8   ILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKLKMLDPDIVVLDIMLP--GIDGF 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + I A   +  +I ++        +   + G DD + KP +  E+ AR+ A+ RR  
Sbjct: 66  EVCQHICATMPETRVIMLTARGQDTDKILGLELGADDYIVKPFNPIELTARIKAVLRRRN 125

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K +      G + +               L   E  +L++ M N+GK + + +I +A+
Sbjct: 126 GPKETKQVLNCGKLCLDITANKLFKDELEIELTPNEFALLKFFMENQGKALKRYEILNAV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G  +   +   ++ HI +LR+K+ +     D + +    GY 
Sbjct: 186 WGE-NYFGDTKTLDVHIRRLREKIEDHPSYPDYIKTVWGSGYR 227


>gi|315640983|ref|ZP_07896074.1| response regulator [Enterococcus italicus DSM 15952]
 gi|315483254|gb|EFU73759.1| response regulator [Enterococcus italicus DSM 15952]
          Length = 226

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +  S+  + ++     L+   + +   +   L+      L
Sbjct: 3   ILIVDDEEKILEIIDAYLVANHYSV--YKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I ++        L     G DD + KP   +E++AR+  + RR + 
Sbjct: 61  TVCRKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTET 120

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +N     +  G + V+ + R   +      L   E  IL  L++   K  +++ +   +
Sbjct: 121 LSNPNKLSSSNGELIVYPESRHVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            G+ +    +  ++SHI  LR K+ N       + +    GY  
Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223


>gi|150389477|ref|YP_001319526.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949339|gb|ABR47867.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 237

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +      +   +G+  + + + +         +ED   I   ++       
Sbjct: 10  ILIIDDEEDILKLLSTVLKREGLD-DIYTAGDANSGYALFEKEDPDIILLDIMLPDGDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA S VP++ IS        +  F  G DD + KP   +E+  RV A  RR   
Sbjct: 69  EICKRIRAISNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRVKASLRRTNQ 128

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N +      E GP ++     +    G++  L  +E +I  Y+  N  + ++K QI S 
Sbjct: 129 RNEKYQDTIYELGPFKIDEKKIEVIKNGQLVELLPKEYKIFLYMTKNPNQILSKEQISSK 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G  D    +N +  HI +LR+K+ +       + +K+ LGY  
Sbjct: 189 VWGE-DYIGFDNTIMVHIRRLREKIEDDPSNPKHIINKKGLGYKF 232


>gi|259503740|ref|ZP_05746642.1| response regulator [Lactobacillus antri DSM 16041]
 gi|259168303|gb|EEW52798.1| response regulator [Lactobacillus antri DSM 16041]
          Length = 234

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 104/233 (44%), Gaps = 20/233 (8%)

Query: 5   IDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKVLE 62
           I+D   V +         G   E  ++ +E EE   ++  + DV  ++  L  K    ++
Sbjct: 2   IEDNHSVCEMMAMFLKKQGWQYEFAYDGIEAEEKFTAAPDKWDVILLDLNLPKK--DGMQ 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   IR  S  VPLI ++   +    +   + G DD V KP     ++AR+ A+YRR ++
Sbjct: 60  VAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSAITLIARIKALYRRSQL 119

Query: 122 SNNR------------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRV 168
           S +              +T   R+ +  R+  +  +    L  +E  +L+ L +   +  
Sbjct: 120 SKHPEDQDGTAARDFDVQTKNFRMNTKTREVYLYDQPIADLTPKEFDLLKTLASKPRQVF 179

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + Q+   ++  ++   +E  V++HI KLR+KL + LG   + +   +GY  D
Sbjct: 180 TREQLLQLVWD-YEYYGDERTVDAHIKKLRQKLED-LGPQVIKTVWGVGYKFD 230


>gi|226314263|ref|YP_002774159.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097213|dbj|BAH45655.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +        +G S++   S +           D+  ++  L        
Sbjct: 4   ILIIEDDTVIAEVQKDYLEANGYSVDVATSGDRGLQKALQEEYDLLILDLMLPIV--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R    +P++ +S        +     G DD ++KP    E++ARV A   R   
Sbjct: 62  EICKQVRKVKNIPILLVSAKKEDIDKIRGLGLGADDHISKPFSLGELVARVKAHLARYDR 121

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    +        IR+    R   + G       +E  +L +L+ +     +KT+
Sbjct: 122 LVSDSKPLTAKEEIRLRGIRIDKLARRVYINGNEVAFTSKEYDLLLFLVTHPNWVFSKTE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +F  I+GL D   +   V  HISKLR+K+  +      +++   +GY  
Sbjct: 182 LFEKIWGL-DSYGDIATVTVHISKLREKIESDPAKPQYIETVWGVGYRF 229


>gi|254252356|ref|ZP_04945674.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124894965|gb|EAY68845.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 225

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEESYDVIVLDVMLPV--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LARV  + RR   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L    G+ +++TQI S ++ +
Sbjct: 121 RETERITVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKVDDDFPIKLIHTVRGVGYVLE 220


>gi|124026776|ref|YP_001015891.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123961844|gb|ABM76627.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 246

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +      E    +      D+  ++  L        
Sbjct: 4   ILVVDDEPAVLKVLVTRLNLAGYQVLSAQDGEQALEVFHKEAPDLVVLDVMLP--KMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD + KP   +E+ AR+A I RR+  
Sbjct: 62  AVCRRIRAESCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRVGP 121

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                + G + V ++ R     GE   L   E  +LE L  + G+ V 
Sbjct: 122 APTIDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVP 181

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 182 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 232


>gi|260577651|ref|ZP_05845587.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258604197|gb|EEW17438.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 240

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPE--LDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 133

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V      L   E  +L  L    G+ + +  + + 
Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTGTEFELLVALALRPGQVLTRHDLVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 237


>gi|71737192|ref|YP_276924.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|289646922|ref|ZP_06478265.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|71557745|gb|AAZ36956.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320326322|gb|EFW82375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320331685|gb|EFW87623.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330872407|gb|EGH06556.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330891387|gb|EGH24048.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330989497|gb|EGH87600.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 224

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPE--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R      ++ ++    L+  +   + G DD + KP    E+LARV  + RR + 
Sbjct: 61  EVLSRLRKTVSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|88854568|ref|ZP_01129235.1| two component transcriptional regulator, winged helix family
           protein [marine actinobacterium PHSC20C1]
 gi|88816376|gb|EAR26231.1| two component transcriptional regulator, winged helix family
           protein [marine actinobacterium PHSC20C1]
          Length = 241

 Score =  224 bits (572), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIG---KGE 58
           ++I+D   + D      G+ G +    +      E  +     D+  ++  L G    G+
Sbjct: 4   LIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDVAGD 63

Query: 59  K--VLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           +   + + R IR   + VP++ ++    ++T ++  D+G DD + KP H  E+LARV A+
Sbjct: 64  EPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARVRAL 123

Query: 116 YRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR  +          + + +  R  E  G    L  +E  +LEYLM N G+ V+ T++ 
Sbjct: 124 LRRSPQAQAPVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSSTELI 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +   +     NVV+++I  LR+KL      D ++++R  GY I+
Sbjct: 184 DHAWD-SNYEGFSNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIE 229


>gi|326773621|ref|ZP_08232904.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326636851|gb|EGE37754.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 219

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +     + E  + +  + +ED   I   +        
Sbjct: 4   ILIVEDEPRIVAFLTKGLKAAGFTTH--TTAEGGQAVALAVQEDFDLIILDVGLPDIDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--R 118
           E+ + +R      P+I ++   S+   +   + G DD + KP    E+LAR+    R   
Sbjct: 62  EVLQQLRGQGVGTPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R     + +    R   ++G    L  RE  + E  M + G+ +++ Q+ SA++
Sbjct: 122 TGPDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAETFMRHPGQVLSREQLLSAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GL D     NVVE ++S LR KL    G   V++ R +GY +
Sbjct: 182 GL-DFDPGSNVVEVYVSYLRNKL----GRQRVETVRGMGYRL 218


>gi|253579795|ref|ZP_04857063.1| two-component system response regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848794|gb|EES76756.1| two-component system response regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   +E LQ    ++   +   ++  G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAENIEADFCNT--GKEGLQKLREQEYQLVVLDVMMPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N +           +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 227


>gi|297200795|ref|ZP_06918192.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712366|gb|EDY56400.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 269

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +                R D   ++  L       L 
Sbjct: 46  LVVDDELSITELLSMALRYEGWQIRSAGDGTGAVQTAREFRPDAVVLDMMLPD--MDGLA 103

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 163

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R++     G + +  D  +    GE   L   E  +L +LM N  + ++K QI   +
Sbjct: 164 ADRRSDSVLVVGDLTLDEDSHEVSRAGENIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 224 W-SYDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 264


>gi|163797104|ref|ZP_02191059.1| Response regulator [alpha proteobacterium BAL199]
 gi|159177620|gb|EDP62173.1| Response regulator [alpha proteobacterium BAL199]
          Length = 246

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 8/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D A +          +G  +      E    + +  + D+  ++  L       
Sbjct: 18  LILIVEDEAPIVTLLRYNLEREGFRVADAGDGEEALLVAAERKPDLILLDWMLPL--LSG 75

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +R       VP+I ++        +   +SG DD V KP    E++ARV A+ R
Sbjct: 76  IEVCRRLRRVPDTKNVPIIMLTARGEEGDRIRGLNSGADDYVTKPFSPSELIARVRAVLR 135

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R + S  +     G + +       +       L   E R+L + + + G+  ++ Q+  
Sbjct: 136 RARPSTEDEMLHYGDLHMDLAAHRVKRSERDIHLGPTEFRLLRHFLEHPGRVFSREQLLD 195

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  VE   V+ HI +LRK L  +   D + + R  GY++D
Sbjct: 196 TVWGP-DVYVEPRTVDVHIRRLRKALNAEQDDDVIRTVRSAGYALD 240


>gi|94480746|emb|CAK02710.1| putative response regulator [Escherichia coli]
          Length = 239

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNV--NGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 65  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 124

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +        + +    R+  +  +   L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNILLAGRLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|87301814|ref|ZP_01084648.1| two-component response regulator [Synechococcus sp. WH 5701]
 gi|87283382|gb|EAQ75337.1| two-component response regulator [Synechococcus sp. WH 5701]
          Length = 248

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +   +           +  D+  ++  +        
Sbjct: 11  ILVVDDEASIRRILDTRLSMIGYQVVTASDGVEALEAFRQSSPDLVVLDVMMP--KLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   + G +R+ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 DPVVGIPNSGVIQVGELRIDTNKRQVYRGEERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|75762247|ref|ZP_00742136.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74490270|gb|EAO53597.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 247

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 21  ILIVDDDQDIVQFIKVNLMQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R +R    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 79  ELCRRVREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 139 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEI 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 199 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246


>gi|291545612|emb|CBL18720.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 230

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   +E LQ    ++   +   ++  G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAENIEADFCNT--GKEGLQKLREQEYQLVVLDVMMPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N++       +   +++  + R        F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 227


>gi|307730121|ref|YP_003907345.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307584656|gb|ADN58054.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 225

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++  +       L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTSAYLKKGLEESGFSVDLASDGAEGLLLAQEQDYDVIVLDVMLPT--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + +++RA    P++ ++    +   +   + G DD + KP    E LARV  + RR   
Sbjct: 61  AVLKVLRATHATPVLFLTARDDVNDRVRGLELGGDDYLVKPFAFVEFLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G + +    R  +       L  RE  +L+ L+  +G+ +++TQI S ++ +
Sbjct: 121 RESERLAVGDLEMDIQRRRVKRGATRIDLTPREFSLLQLLVRRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY I+
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIQTVRGVGYVIE 220


>gi|307293657|ref|ZP_07573501.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879808|gb|EFN11025.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 232

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A          G+ G +++  ++     +L S     V  ++  +       +
Sbjct: 5   ILVVEDDADTAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGVIILDRMMPA--MDGM 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + +RA   + P+I +S   + +  ++   SG DD + KP    E+LARV  + RR  
Sbjct: 63  ATLKALRAAGIETPVIILSALGTPEDRVEGLTSGADDYLVKPFAFAELLARVQLLLRRGG 122

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +          + +    R  +       L  RE R+LE+ + +  + V +T +   +
Sbjct: 123 SGSAVVTHLRHDDLEMDLLSRRVKRGSRTVDLQPREFRLLEFFLRHPDQVVTRTMLLEGV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF----DPVDSKRFLGYSI 220
           +  +      NV++ H+S+LR+KL            + + R +GY +
Sbjct: 183 WD-YHFDPGTNVIDVHVSRLRRKLDEGGEAGGSRPLLHTVRGMGYRL 228


>gi|304405488|ref|ZP_07387147.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345527|gb|EFM11362.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         ++G  +           L       V  ++  +   G    
Sbjct: 9   ILLVDDEPHILQFLELGLANEGFDVRTAPDGMTAINLAQEFVPHVIVLDVMMP--GMDGF 66

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119
           E  R+I+   S+V +I ++    +   +     G DD + KP    E+LAR+ A  R + 
Sbjct: 67  ETCRMIKKGGSEVAVIMLTAKDEVDDRVKGLTLGADDYLVKPFSFDELLARIRARLRNQF 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + G   +    ++ + +G+   L   E  +L+Y++AN G  ++K+ I   ++G
Sbjct: 127 PMLFGEVKLGRFSIDDRRKEIQYEGQALELSPTEYELLKYMVANHGIVLSKSTILDKVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   EEN+VE ++  LR KL +K     + + R  GY ID
Sbjct: 187 -YDFGGEENIVEVYVRSLRDKLGDK-EHRLIRTLRGAGYRID 226


>gi|253681316|ref|ZP_04862114.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562554|gb|EES92005.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 235

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        D   + G  +      +  +   D++ I+  +        
Sbjct: 4   ILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFNIIENNNVDLAIIDIMMP--KIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR   ++P+I +S        +   + G DD + KP +  E++ARV A  RR   
Sbjct: 62  HLVKKIREKYKIPVIMLSAKSEYSHKILGLELGADDYITKPFNAMEVVARVKAQLRRYYK 121

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            ++            E G +++ +        G   PL   E +I+ YLM + G+   K 
Sbjct: 122 YHSTGDTVNDNEKCLEYGNLKLNNSTCTLYKNGVEIPLTSTEYKIIFYLMNSCGRVFTKK 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           QIF  ++       ++NV+  HIS LR K+ N     + + + R LGY  ++N
Sbjct: 182 QIFEYVWDEP-FYGDDNVIMVHISNLRDKIENDSKNPEYIKTIRGLGYKFNYN 233


>gi|229032474|ref|ZP_04188442.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228728843|gb|EEL79851.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 229

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   +      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTIDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|229096388|ref|ZP_04227360.1| Two-component response regulator vanR [Bacillus cereus Rock3-29]
 gi|229102503|ref|ZP_04233209.1| Two-component response regulator vanR [Bacillus cereus Rock3-28]
 gi|228680893|gb|EEL35064.1| Two-component response regulator vanR [Bacillus cereus Rock3-28]
 gi|228686950|gb|EEL40856.1| Two-component response regulator vanR [Bacillus cereus Rock3-29]
          Length = 243

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G ++  F++   EE L+      +      ++      +
Sbjct: 17  ILIVDDDLDIVQFINVNLTQEGFTV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 75  ELCRRIREKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R  ++ G+   + + E  IL  + A + +     +I
Sbjct: 135 FNQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +++         N V  HI++LR K+  N      + +   +GY I
Sbjct: 195 YESVWNERAYESN-NTVMVHIARLRNKIEENPKEPRFIQNVWGVGYKI 241


>gi|261856400|ref|YP_003263683.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261836869|gb|ACX96636.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 236

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++    A   D G  +    + E  E         V  I   L+  GE  L
Sbjct: 4   ILVVDDDADLRSLLRAYLTDQGYHV--IEAAEGSELWTRLENSTVDLIILDLMLPGEDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IRA    P++ ++        +   + G DD + KP H RE+LAR+ +I+RR + 
Sbjct: 62  ALCRTIRARQTTPILMLTARGDEMDRIIGLEMGADDYMPKPFHPRELLARIRSIFRRSEQ 121

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N              +    R      + V PL   E R+L+ L  +    +++ Q+  
Sbjct: 122 QNQAQPPRHLHFSGWTLDLAARHLMSADQVVIPLSTGEFRLLKTLAEHPNTVLSRDQLMD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           A+ G   + ++   ++  +S+LR++L  +      + + R  GY +
Sbjct: 182 ALAGREADPLD-RTIDVMMSRLRRRLGDDAREPTLIKTIRNEGYML 226


>gi|320540374|ref|ZP_08040024.1| putative DNA-binding response regulator in two-component regulatory
           system with PhoQ [Serratia symbiotica str. Tucson]
 gi|320029305|gb|EFW11334.1| putative DNA-binding response regulator in two-component regulatory
           system with PhoQ [Serratia symbiotica str. Tucson]
          Length = 223

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++     +  ++       D++ ++  L   GE  L
Sbjct: 3   ILVVEDNGLLRHHLSVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIVDLVLP--GEDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  RAH  ++P++G++   S Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRWRAHQMKLPILGLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIIVLPPFQIDLSRRELSVNEQNIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKK++ +   D + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKVQAEYPQDVITTVRGQGYRFDV 222


>gi|313678937|ref|YP_004056676.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313151652|gb|ADR35503.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 230

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A     G ++   +  E           D+  ++  L   G    
Sbjct: 4   ILIVEDDREIAALAAAQLERAGHAVRVVHDGEAGLAEALEGGHDLLVLDVMLP--GVSGF 61

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R     P ++ ++        +   + G DD + KP   RE+ ARV A+ RR  
Sbjct: 62  EIVERLRRRPGYPRVLMLTARAEEVDRVLGLELGADDYLTKPFSLRELEARVRALLRRGV 121

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +    R   V G    L  RE  +L  L  + G+   + ++   
Sbjct: 122 GPEPKPAGPLVFGALEIDPAARRVRVDGRTVNLTAREFDLLYELARHPGRVYTRAELLER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G    +  E+ V SHI++LR K+  +      V++   +GY  
Sbjct: 182 VWGAG-FSGYEHTVNSHINRLRAKIEPDAKRPVYVETVWGVGYRF 225


>gi|300766939|ref|ZP_07076852.1| DNA-binding response regulator [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495477|gb|EFK30632.1| DNA-binding response regulator [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 234

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 98/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-------AIEAFLI 54
            ++++D   +  GY+       +  E FN L   + L +               ++  L 
Sbjct: 5   ILIVEDEGSL-SGYLT----KELQFEDFNVLVAADGLAAMETYQAHQNELLLILLDWMLP 59

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                 +E+ R IR H QVP+I ++    +   +   D+G DD + KP    E+LAR+  
Sbjct: 60  --KLDGMEVLRRIRKHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRV 117

Query: 115 IYRRLKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           I RR++     N   +   +++ +         E   L  RE  +L++ +A+  +   + 
Sbjct: 118 IQRRIENQVEPNQVYQLDDVQLDTKAHRVTNGQEEVTLTHREYDLLQFFLAHPDEVFTRD 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   ++G  D   ++NVV+ ++  LR K+        + + R +GY +
Sbjct: 178 DLLDQVWGA-DFLGQQNVVDVYVGYLRNKITTTGASPLIQTVRGVGYKL 225


>gi|152973317|ref|YP_001338463.1| DNA-binding response regulator CreB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238892984|ref|YP_002917718.1| DNA-binding response regulator CreB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150958166|gb|ABR80196.1| catabolic regulation response regulator [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545300|dbj|BAH61651.1| catabolic regulation response regulator [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 229

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   + D  + +   +G  +  F          +    DV+ ++  L        
Sbjct: 6   IWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGLPD--ISGF 63

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +   +  +P++ ++        L   + G DD + KP   RE+ ARV  + RRL+
Sbjct: 64  ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G   +          G+   L R E  +L+ L+   G+  ++ Q+   +
Sbjct: 124 KFAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    E+++   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WIDAWESLD-RTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226


>gi|90579472|ref|ZP_01235281.1| putative transcriptional regulatory protein PhoP [Vibrio angustum
           S14]
 gi|90439046|gb|EAS64228.1| putative transcriptional regulatory protein PhoP [Vibrio angustum
           S14]
          Length = 224

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 105/224 (46%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++     +   + G  ++  N+ E   +   +   D++ ++  L  +    +
Sbjct: 3   ILIVEDDAILSHHLKSQLSELGNQVQCANTAEEGLFFAENYPNDIAIVDIGLPDR--DGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R    ++P++ ++   + Q  +   ++G DD + KP    E++AR++A+ RR  
Sbjct: 61  SLIKDMRKKGLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G IRV    +   V   +  L   E  +LEYLM +  + V+K ++   +Y 
Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVYVHETLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D+  + N +E  IS+LRKK       +P+ + R  GY  + N
Sbjct: 180 -EDQEGDPNTIEVMISRLRKKFTKTGQDNPISTIRGQGYIFELN 222


>gi|118476259|ref|YP_893410.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118415484|gb|ABK83903.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 232

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +   D   ++   + E   +L      DV  ++  +        
Sbjct: 12  LLVVEDNASLLESIVQIL-HDEFEVDTALNGEEGLFLALQNIYDVILLDVMMPE--MDGF 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 129 SLTTKQTIRYKGIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 189 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 229


>gi|325277325|ref|ZP_08142950.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324097515|gb|EGB95736.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 226

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A           + G + E  +  E  ++L  S   D+  ++  L   G    
Sbjct: 3   LLIVEDQARTGQYLRQGLNEAGFATELASDGETGQFLALSGDHDLLILDVMLP--GRDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +R A    P++ ++   +++  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQAVRQAGRDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       +R+    R  E  G    L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGSRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLE 222


>gi|229167840|ref|ZP_04295572.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228615656|gb|EEK72749.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 228

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++    +++ +E L      +V  I   ++       
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNV--LEAIDGKEALSIFEEHEVHLIILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYT 122

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +      +   +  I V    R   +  +   L   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 STVNVSIEDTLTSSGIHVHFPSRTVNIDEKEINLTHTEFEILTYFMQNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQK--ATCIVTVVRTGYKFE 225


>gi|260588299|ref|ZP_05854212.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|260541350|gb|EEX21919.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
          Length = 230

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 98/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  N+   ++ LQ    ++   +   ++  G    
Sbjct: 4   ILIIDDDRELCALIKRSVQAENIEADFCNT--GKDGLQKLKEQEYQLVVLDVMMPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  + +P++  +      + +    +G DD + KP    E++AR+A++ RR   
Sbjct: 62  ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N +           +++  + R    +   F LP +E  +L Y   ++GK + K QI+ 
Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N + + IS+LRKKL  N      + + + +GY  +
Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFN 227


>gi|158339459|ref|YP_001520636.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309700|gb|ABW31317.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 222

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G +     +    E L  +  +    +   L   G   L
Sbjct: 4   ILIAEDEPRIASFIEKGLKSHGYATTTVEN--AHEALSFALSDGFELLILDLGLPGRDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R    V P+I ++    +Q  +   + G DD + KP    E+LARV    R + 
Sbjct: 62  EVLADLRGQGSVLPVIILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRLRTVS 121

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             + +    R  +V  +   LP RE  + E    + G+ +++ Q+   
Sbjct: 122 IGTPPETMTMTAHNVVLDLRTRKAKVDDQWIELPAREFILAETFFRHPGQVLSRQQLLDR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ ++  LRKKL    G   +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKL----GNSLIETVRGVGYRL 220


>gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 290

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +      E    +    + D+  ++  L        
Sbjct: 28  ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPR--LDGF 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+  
Sbjct: 86  AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGP 145

Query: 122 SNNRAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  AE             G + V ++ R     GE   L   E  +LE L    G+ V 
Sbjct: 146 GSATAEIRDLPVGQGVMRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVP 205

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GYS
Sbjct: 206 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYS 257


>gi|300727604|ref|ZP_07060993.1| transcriptional activator protein CopR [Prevotella bryantii B14]
 gi|299775124|gb|EFI71727.1| transcriptional activator protein CopR [Prevotella bryantii B14]
          Length = 233

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
             +++D   + D       D G  ++ F++  E    L++  R D+  ++  +   G   
Sbjct: 13  ICMVEDELNISDFVSRGLKDFGYEIDVFHNGQEAWNKLKADNRYDLLLLDIRMP--GMTG 70

Query: 61  LELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           LE+ +  R       P++ ++   + +  +    +G DD V KP    E++AR+ A+ RR
Sbjct: 71  LEICQHYREKYGYHTPILMLTALGTTEDIVMGLHAGADDYVVKPFKFAELIARIKAMLRR 130

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +    N      + +               L  +E R+LEY+M + G+ +++ Q+   +
Sbjct: 131 TQALQQNSLIYHDLTIDPSTHKAIRSNIEADLSVKEYRLLEYMMQHHGEVISRRQLLKDV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   D     N+V+ ++  LR K+ +      + +   +GY +
Sbjct: 191 WDK-DFDTNTNIVDVYVKYLRTKIDDPFKTKLIHTIIGMGYML 232


>gi|86356934|ref|YP_468826.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281036|gb|ABC90099.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 251

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ S    DV  I+  L  +    L
Sbjct: 29  ILIIEDDLEAAAYLTKAFREAGIVADHASDGEAGLFMGSENTYDVIVIDRMLPRR--DGL 86

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 87  SVISELRRKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 147 TPEQDVVYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 207 D-YHFDPQTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 247


>gi|163940379|ref|YP_001645263.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862576|gb|ABY43635.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++    + +  E +    ++    I   ++       
Sbjct: 6   ILVVEDDQEIQELIKQFLMTQQYTV--VVASDGLEGMTQFNKQSFDLILLDVMMPNLNGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 64  EVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G
Sbjct: 124 KNVNNHLVFKEVRIDVDAYRVYVNDVEILLTIKEFEILQLLFQNERKVLTRENIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E  ++++HI  LRKKL        + + + +GY ID
Sbjct: 184 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKID 220


>gi|320012873|gb|ADW07723.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 244

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 86/235 (36%), Gaps = 20/235 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D     +        DG  +   +         +    D+  ++  L   G   LE
Sbjct: 6   LVAEDDRKQAELIRRYLAHDGHEVSVVHDGRTALGEATRRPPDLLVLDWMLP--GLDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   ++P++ ++   +    L   D G DD + KP   RE++AR+  + RR + S
Sbjct: 64  VCRRLRGAGELPILMLTARSTEDDLLRGLDLGADDYMTKPFRPRELVARIRTLLRRSRPS 123

Query: 123 NN----------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                                 G + V +      V          E RIL  + A+  +
Sbjct: 124 AGPATVAAVSPAAPESPAVLTVGGLTVNAAQHQVFVHDRPVNCTPGEFRILSAMAASPDR 183

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++Q+   +       V E  V+ HI  LRKK+  +      + +   +GY +
Sbjct: 184 VFTRSQLLDCLTD-HGRPVSERTVDVHILNLRKKIETSPRRPQHLLTVHGIGYKL 237


>gi|215919141|ref|NP_820222.2| transcriptional regulatory protein [Coxiella burnetii RSA 493]
 gi|206584025|gb|AAO90736.2| transcriptional regulatory protein [Coxiella burnetii RSA 493]
          Length = 232

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + DG  A     G +++     +    + SS  E    I   L       L+
Sbjct: 13  LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 72

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + IR  +   P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR K 
Sbjct: 73  VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRRSKE 132

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G I +        ++ +   + RRE  +L+ L+ N G+ +++ Q+   +YG 
Sbjct: 133 RAKPIISHGDITLDPASHVVTLKKKEVMVARREFALLQKLLENAGRVISREQLNQTLYG- 191

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E ++ N +E HI  LRK+     G   + + R +GY ++
Sbjct: 192 WGENIDSNALEVHIHNLRKR----FGAKLIRTIRGVGYMVE 228


>gi|170749884|ref|YP_001756144.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656406|gb|ACB25461.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 249

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +  F + G   +  +       L      DV  ++  L       L
Sbjct: 21  LLIIEDDREAAAYLVKAFRETGHVADSAHDGLDGYALAREGDYDVLIVDRMLP--KLDGL 78

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R  +   P + +S    +   +    +G DD + KP    E+LAR  A+ RR  
Sbjct: 79  SLIRSLREQNVATPTLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEALARRQA 138

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S      R   G + +          G   PL  RE R+LEYLM + G+ V +T +   
Sbjct: 139 GSGAAEETRYRIGDLELDRLSHRVTRAGREIPLQPREFRLLEYLMRHAGQVVTRTMLLEH 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++  +    + NV++ H+S+LR KL        + + R  GY + ++
Sbjct: 199 VWD-YHFDPQTNVIDVHVSRLRSKLDKGFPSPIIHTVRGAGYVLRFD 244


>gi|326789171|ref|YP_004306992.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326539935|gb|ADZ81794.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 230

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G  +E   +      L    + D+  ++  +       +
Sbjct: 6   ILIVDDEKEIRDLIEIYLKNEGYIVEKAGTGLEALQLVEERQIDLIILDVMMPVV--NGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +    IR     P+I +S        +     G DD + KP +  E++ARV A  RR   
Sbjct: 64  DACIKIREQYNTPIIMLSAKVEDIDKILGLSVGADDYLAKPFNPLELIARVKAQLRRFTK 123

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S+   E   + +  +       G+   L   E  IL+ L  N+G       I+ 
Sbjct: 124 LNTAHTSSKVLEQDGLTLNLETGKVHKNGDEINLTPTELSILKLLWMNKGMVFKIETIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++G  +     N V  HI KLR+K+       D + +   +GY  
Sbjct: 184 RVWGQ-EYFDNNNTVMVHIRKLREKIEENPRTPDYIYTVWGVGYKF 228


>gi|295677593|ref|YP_003606117.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437436|gb|ADG16606.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 265

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLVRSLRQSAYAVDHVKSGVEADTALSMQTFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR   V  +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLE 219


>gi|258651433|ref|YP_003200589.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258554658|gb|ACV77600.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 240

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 14/220 (6%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           ++        DG  +           L  S   D+  ++  L   G   L++ R +R  S
Sbjct: 16  REVLRRYLTRDGHDVLEAADGPTGLRLVRSHHPDLIVLDLMLP--GMDGLQVCREVRRTS 73

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
            VP+I ++        +   + G DD V KP   RE+  RV+ + +R +     A  G  
Sbjct: 74  TVPVIMLTALGQESDRVVGLEFGADDYVVKPFSPRELALRVSRVLQRSRGPAAPAAPGSA 133

Query: 132 RV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            V          +  R     G+   L  RE  +L +L+A+ G+  ++T++   ++G   
Sbjct: 134 EVTSADGELSANALSRTARRGGDELALTSREFDLLHFLLAHPGQVFSRTELMEQVWGW-- 191

Query: 183 EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              +++ V  H+ +LR+K+  +      + +   +GY +D
Sbjct: 192 SFGDQSTVTVHVRRLREKVEPDPTKPTRIVTVWGVGYRLD 231


>gi|187919104|ref|YP_001888135.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717542|gb|ACD18765.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 226

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G  ++   +    +    +   D+  ++  L   G+   
Sbjct: 3   ILLVEDEPKTGAYLRKGLSEAGYVVDWAQNGVTGQHQAETEDYDLLILDVMLP--GQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R     P++ ++    +   +   + G DD + KP    E++ARV +I RR K 
Sbjct: 61  TLLQNLRRKRCTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELIARVRSILRRGKP 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + +    R    Q +V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 REFTLLKVADLELDLTRRKATRQHDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+S I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220


>gi|262045791|ref|ZP_06018755.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|260573750|gb|EEX30306.1| response regulator [Lactobacillus crispatus MV-3A-US]
          Length = 240

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 104/235 (44%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEK 59
            ++++D   V +     F  +G   +   + +E  +  + +A + D+  ++  L  K   
Sbjct: 5   ILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKK--D 62

Query: 60  VLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++ + +RA    VP+I ++   S    +     G D+ V KP     ++AR+ A++RR
Sbjct: 63  GIQVAKEVRAILPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRR 122

Query: 119 LKVSNN-----------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGK 166
           + +                 T  +++  + R+     +    L  +E  +L  +     +
Sbjct: 123 VMMEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQ 182

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 183 VFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235


>gi|257877591|ref|ZP_05657244.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257811757|gb|EEV40577.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 231

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E F               DV+ ++  L        
Sbjct: 5   IIVVDDEKEIAELVTTFLRNEGFQVESFYDGTSALAYLEKETVDVAVLDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR     P++ ++        +     G DD V KP +  E++ARV    RR + 
Sbjct: 63  QLLQQIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  A        E   + +  +     + G+   L   E +IL YL  ++G  VA   +
Sbjct: 123 YNQSANPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F A++         N V +HI++LR+KL         + +   +GY I+
Sbjct: 183 FEAVWKEK-YLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIE 230


>gi|255519927|ref|ZP_05387164.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
          Length = 225

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   N     E +  + +  ++ I+  +        
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPN--MDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R ++  +P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR  
Sbjct: 62  ELCKKMRTSYPDIPVIMLTAKDTLADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLE 222


>gi|217969842|ref|YP_002355076.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507169|gb|ACK54180.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 230

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  ++ DG        G +++        +   +    D+  ++  L       +
Sbjct: 3   ILLAEDDPVIADGICRALRRGGCAVDHVADGMEADAALAGQGYDLLILDLGLPR--MNGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA     P++ ++    +   +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLKRLRARKSAQPVLILTAQDGVDDRVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G +      R  ++ G++  L  RE  +LE  +   G+ V+K Q+   + G 
Sbjct: 121 GQPRCIEIGQLSYDQADRVVKIGGQLVELSAREIGLLEIFLLRVGRLVSKDQLVDHLCG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E V  N +E ++ +LRKKL +      + + R LGY ++
Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEDSG--VRIVTVRGLGYCLE 218


>gi|219683981|ref|YP_002470364.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219621631|gb|ACL29788.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
          Length = 239

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 85/229 (37%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +                   D+  ++  L       +
Sbjct: 14  ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPV--MDGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + I A   +P++ ++        +     G DD ++KP   RE++AR  A+ RR+  
Sbjct: 72  EATKRIEAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARERALLRRVDR 131

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         +   + G + +    R   + G+   L   E  +L  L       + + Q
Sbjct: 132 AKVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQ 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D A     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 192 LLEEVWDWVD-ASSTRTVDSHVKALRHKL----GASTIRTVHGVGYAFE 235


>gi|218551702|ref|YP_002385494.1| DNA-binding response regulator CreB [Escherichia fergusonii ATCC
           35469]
 gi|218359244|emb|CAQ91910.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia fergusonii ATCC 35469]
 gi|324112609|gb|EGC06586.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325495931|gb|EGC93790.1| DNA-binding response regulator CreB [Escherichia fergusonii ECD227]
          Length = 229

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  I +   +G  +E F               DV+ ++  L        EL
Sbjct: 8   LVEDEQGIADTLIYMLTQEGFLVEAFERGLPALEKAHFQVPDVAILDVGLPD--ISGFEL 65

Query: 64  PRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R +   H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+   ++ 
Sbjct: 126 SAPSPVIRCGQFELNEPAAQISWCDTPLQLTRYEFLLLKTLIMSPGRVWSRQQLMDKVWA 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTFD-RTVDTHIKTLRAKLRAINPALSPINTHRGMGYSL 226


>gi|215482948|ref|YP_002325153.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB307-0294]
 gi|301510477|ref|ZP_07235714.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AB058]
 gi|213989068|gb|ACJ59367.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB307-0294]
          Length = 223

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L     +  
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPD--IEGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKI 219


>gi|160880125|ref|YP_001559093.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428791|gb|ABX42354.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 240

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 97/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++IDD   +      +   +G     + + + E       R   D+  ++  L    E+
Sbjct: 10  ILIIDDEEDILKLLSMVLKKEGFE-NIYTAEDGEGGFTLFKRISPDIILLDIMLPD--EE 66

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E+ + IR  S VP++ IS        +  F  G DD + KP   +E+  R+ AI RR 
Sbjct: 67  GYEVCKKIRKSSNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRIKAILRRS 126

Query: 120 KVSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +           GP ++  +  +    GE+  L  +E ++  YL  +  + ++K ++
Sbjct: 127 SYHDEEENKSTILNLGPFQIDEEKIEVRKNGELIELKPKEYKMFLYLAKHPNQIMSKEKL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            S ++G  D    +N +  HI KLR+K+  +      + + + LGY  
Sbjct: 187 CSEVWGE-DYIGFDNTIMVHIRKLREKIEKDPSNPKHILNIKGLGYKF 233


>gi|5764628|gb|AAD51348.1|AF173226_5 SmeR [Stenotrophomonas maltophilia]
          Length = 229

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G++ E  +         +  + D+  ++  L  +    +
Sbjct: 11  ILIVEDEPRLASVLRDYLAAAGMASEWVDDGGQVIDAFARYQPDLVLLDLMLPQR--DGV 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +RA S VP+I ++        L   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 69  DLCRELRASSDVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVMAVLRRYRP 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +          G+   L   E R+L  L+A  G+  A+ ++   +Y L 
Sbjct: 129 DPGARANGGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLY-LD 187

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              V +  V+SH+  LR+KL +     +P+ S   +GYS +
Sbjct: 188 HRVVVDRTVDSHVRNLRRKLADAGMEGEPIRSVYGMGYSYE 228


>gi|238796000|ref|ZP_04639512.1| Two-component response regulator of virulence determinant [Yersinia
           mollaretii ATCC 43969]
 gi|238720205|gb|EEQ12009.1| Two-component response regulator of virulence determinant [Yersinia
           mollaretii ATCC 43969]
          Length = 218

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 105/220 (47%), Gaps = 5/220 (2%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D AL++        + G  ++     +  ++       D++ I+  L   GE  L L R
Sbjct: 2   EDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLP--GEDGLSLIR 59

Query: 66  IIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123
             R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + +++
Sbjct: 60  RWRSHQANLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIGLAS 119

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y    E
Sbjct: 120 QVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNSGKVVSKETLMLQLY-PDAE 178

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 179 LRESHTIDVLMGRLRKKLLAEHEGEVITTIRGQGYRFDAN 218


>gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 239

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +          AR D   ++  +   G     
Sbjct: 16  LVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMP--GMDGFG 73

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPNEFTLLRYFVINAGTVLSKPKILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235


>gi|28377207|ref|NP_784099.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|28270038|emb|CAD62938.1| response regulator [Lactobacillus plantarum WCFS1]
          Length = 234

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 97/229 (42%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-------AIEAFLI 54
            ++++D   +  GY+       +  E FN L     L +               ++  L 
Sbjct: 5   ILIVEDEGSL-SGYLT----KELQFEDFNVLVAANGLAAMETYQAHQNELLLILLDWMLP 59

Query: 55  GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                 +E+ R IR H QVP+I ++    +   +   D+G DD + KP    E+LAR+  
Sbjct: 60  --KLDGMEVLRRIRKHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRV 117

Query: 115 IYRRLKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           I RR++     N   +   +++ +         E   L  RE  +L++ +A+  +   + 
Sbjct: 118 IQRRIENQVEPNQVYQLDDVQLDTKAHRVTNGQEEVTLTHREYDLLQFFLAHPDEVFTRD 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   ++G  D   ++NVV+ ++  LR K+        + + R +GY +
Sbjct: 178 DLLDQVWGA-DFLGQQNVVDVYVGYLRNKITTTGASPLIQTVRGVGYKL 225


>gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus DSM
           44985]
 gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 240

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G S++  ++      + +    D   ++  L   G    
Sbjct: 16  ILIVDDEPNIAYLLRECLLAQGFSVKEAHNPTDALAVVTKEPPDAMILDVMLP--GMDGY 73

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R   ++ P++ ++   SL+  L     G DD V KP    E++AR+  I RR  
Sbjct: 74  TLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S+   E        I +  +  +    G + PL   E  +L Y M N    ++K QI  
Sbjct: 134 KSDGARESPTLVFEDIELNEETHEVWKAGVLVPLSPTEFTLLRYFMVNARIVLSKRQILE 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 HVW-HYDFGGDMNVVESYVSYLRRKI-DTGEKKMLQTLRGVGYVL 236


>gi|253581579|ref|ZP_04858804.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
 gi|251836649|gb|EES65184.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
          Length = 220

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 102/221 (46%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G  +      E    L      D+  ++  L  K     
Sbjct: 4   ILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIMLPKK--DGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + R I+ +S VP++ +S     +  L  F+ G D+ + KP +++ +LAR+  + +    
Sbjct: 62  SVLREIKKYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKTLIKNTSN 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++  E G I +        V+G+   L  +E  +L YL+ N    +++ ++ + ++G 
Sbjct: 122 NTDHIIELGKITINDTSHTVTVEGKEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D    +  +++HI  LRKKL    G + + + R +GY  +
Sbjct: 181 YDFPGSDRTIDTHIKNLRKKL----GDECIKTVRGIGYKFE 217


>gi|83999830|emb|CAH60130.1| putative two-component response regulator [Streptomyces
           tenjimariensis]
          Length = 234

 Score =  224 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 99/237 (41%), Gaps = 30/237 (12%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++        DG ++    +G + LE         R D++ ++  L   G 
Sbjct: 7   LFVEDDDVIREATQLALERDGFTVTAMPDGLSGLESFRAD----RPDIALLDVMLP--GM 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 61  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 120

Query: 119 L---------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
                           +        G + V ++G +    G    L   E R+L    + 
Sbjct: 121 FGHAGGAESPDPEGRGQAERGLLVFGDLEVDTEGMEVRRAGAPVALTPTEMRLLLEFSSA 180

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G  +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 181 PGTVLSRDKLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 232


>gi|299782927|gb|ADJ40925.1| Two-component response regulator [Lactobacillus fermentum CECT
           5716]
          Length = 240

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 99/233 (42%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +     F  +          E      ++  +D   +   L    +  +
Sbjct: 3   ILMIEDNRSVCEMMSMFFKKEKWDTTFAYDGEEAVEKFAAEADDWEMVLLDLNLPKKDGM 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IR  S  VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR++
Sbjct: 63  QVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALRRRVQ 122

Query: 121 VSNNR-----------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRV 168
           +S               +T   ++ S  R+  + G +   L  +E  +L+ L +   +  
Sbjct: 123 LSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKPKQVF 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 183 TREQLLQLVWD-YEFYGDERTVDAHIKKLRQKIE-KVGPKVIQTVWGVGYKFD 233


>gi|218550275|ref|YP_002384066.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii
           ATCC 35469]
 gi|218357816|emb|CAQ90460.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia fergusonii ATCC 35469]
          Length = 219

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDRLIGDGIKTGLSKMGFSVDWFTGGREGKEALYSAPYDAIILDLTLP--GIDGR 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R  R +  + P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE  PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LR+KL    G   + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHIHHLRRKL----GSGFIRTVHGIGYTL 216


>gi|33594405|ref|NP_882049.1| response regulator protein [Bordetella pertussis Tohama I]
 gi|33597124|ref|NP_884767.1| response regulator protein [Bordetella parapertussis 12822]
 gi|33600968|ref|NP_888528.1| response regulator protein [Bordetella bronchiseptica RB50]
 gi|5777378|emb|CAB53386.1| transcriptional regulatory protein, putative [Bordetella pertussis]
 gi|33564480|emb|CAE43793.1| response regulator protein [Bordetella pertussis Tohama I]
 gi|33566575|emb|CAE37832.1| response regulator protein [Bordetella parapertussis]
 gi|33575403|emb|CAE32480.1| response regulator protein [Bordetella bronchiseptica RB50]
 gi|332383816|gb|AEE68663.1| response regulator protein [Bordetella pertussis CS]
          Length = 223

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +         D G +++     E ++ L + A +    +   L   G   L+
Sbjct: 4   LVIEDDTTLGHALQEFLADQGYAVDWLT--EGDKVLGALAGQPYDLLLLDLNLPGMSGLD 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           + R +R   +QVP++ ++    L   +   D+G DD V KP    E+ ARV A+  RR  
Sbjct: 62  VLRQLRQDGNQVPVLILTARDGLDDRVAGLDAGADDYVTKPFDLPELAARVRALGRRRSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  + E GP+   + GR+    G    L  RE  +LE LMA  G+ V K QI +++   
Sbjct: 122 QAQPQIEVGPLVFDTVGREVRANGTRLALSVRELSVLEMLMARSGRVVTKRQIVNSL-SA 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    EN VE ++ +LRK+L        + + R  GY +D 
Sbjct: 181 WDADFSENAVEVYVYRLRKRLEGSGAS--IQTVRGFGYMLDV 220


>gi|46143552|ref|ZP_00204506.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208535|ref|YP_001053760.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae L20]
 gi|190150390|ref|YP_001968915.1| QseB family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250189|ref|ZP_07336391.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253361|ref|ZP_07339510.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|126097327|gb|ABN74155.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915521|gb|ACE61773.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648043|gb|EFL78250.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302651252|gb|EFL81406.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 221

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG           ++ F   +       S   D   ++  L       L
Sbjct: 3   ILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFEALFSTEYDAVVLDLTLP--KMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
            + +  R  +  +P++ ++   +L   +  F+SG DD + KP    E++ R+ A+  RR 
Sbjct: 61  AILKNWRKENLDIPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K S+     G + + S      +  +   L  +E ++L    +N+ + + ++ I   +Y 
Sbjct: 121 KQSSTEITLGDLTIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRSAIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  V  N +E +I  LRKKL    G + + +   +GY I
Sbjct: 180 SWDNDVSSNAMEVYIHNLRKKL----GKEWIKTVHGIGYKI 216


>gi|332872003|ref|ZP_08440390.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
 gi|332731036|gb|EGJ62339.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
          Length = 223

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L     +  
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPD--IEGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 181 -NFDTDTNNIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKI 219


>gi|261410066|ref|YP_003246307.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286529|gb|ACX68500.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 247

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 18/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    + +    ++ +  +    +   L+  G+  +
Sbjct: 9   ILVVDDEQPIADILKFNLEKEGYEV--ICAFDGISAVEIALTQRPDLMLLDLMLPGKDGM 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA + Q+P+I ++        +   + G DD V KP   REILARV A  RR +
Sbjct: 67  DVCREVRAANLQIPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAHLRRQQ 126

Query: 121 VSNNRAETGP-------------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             +N A+                + + +D       GE   L  RE  ++ YL  N GK 
Sbjct: 127 KPDNSADNTGGTSAGGQGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKV 186

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           + +  +  A++G F+   +   V+  I +LR+K+       + + ++R LGY
Sbjct: 187 MTREHLLQAVWG-FEYFGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGY 237


>gi|194476927|ref|YP_002049106.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
 gi|171191934|gb|ACB42896.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
          Length = 268

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 16/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+   +      G  +      E    +    + D+  ++  L         
Sbjct: 27  LIVDDEPAVRRVLVTRLQLVGYRVICAEDGEEALTIFHQDQPDLIVLDVMLP--KLDGFA 84

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   
Sbjct: 85  VCRRLRAESCVPIIFLSALDTISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144

Query: 123 NNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +  AE             G + V ++ R     G    L   E  +LE L    G+ V +
Sbjct: 145 SATAEPCDIPAGQGVLRVGDLVVDTNRRQVTRGGNRIALTYTEFSLLELLFREPGRVVPR 204

Query: 171 TQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            +I   ++G     A +  VV+ ++++LR KL  +    + + + R  GY
Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254


>gi|56540655|gb|AAV92781.1| PmrA [Salmonella enterica]
 gi|56540657|gb|AAV92782.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                +R     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRVRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +          G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELTVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|58000301|ref|YP_190195.1| DNA-binding transcriptional activator CusR [Escherichia coli]
 gi|47716815|gb|AAT37590.1| SilR [Escherichia coli]
          Length = 226

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 103/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N  G   + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLEV 223


>gi|229015017|ref|ZP_04172094.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229021448|ref|ZP_04178059.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229024498|ref|ZP_04180945.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228736786|gb|EEL87334.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228739853|gb|EEL90239.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|228746284|gb|EEL96210.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 226

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGD-DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD + + D    +F D D   L+ +N  +  + L++    D+  ++  +       
Sbjct: 5   ILVVDDESEIVDVLSDIFSDRDYKVLKAYNGEQALDHLKTQV--DLVILDIMMP--KMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  +++R   + P++ +S   S    +  F  G DD + KP   +E++ARV A  RR K
Sbjct: 61  FEFCKVVREQIKCPILFLSAKHSEIDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREK 120

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N+   G + +     D  + G    +  +E +ILE L  N G+  +K QI+  
Sbjct: 121 RERVNLQNQRFLGNLTINYSQHDVFIDGVKIDVTSKEFKILELLTVNLGQIFSKEQIYEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+GL D   + N +  HI+ LR KL   +    + +   +GY ++
Sbjct: 181 IWGL-DAVGDLNTIIVHINNLRAKLSLGMSTYHIKTVWGVGYKLE 224


>gi|158340377|ref|YP_001521733.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310618|gb|ABW32232.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 222

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G +            L +S   D+  ++  L  +    L
Sbjct: 4   ILIAEDEPRIASFIEKGLKSHGFTTTTIGDAHATLSLAASGEFDLLILDLGLPDR--DGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R H  ++P++ ++    +Q  +   + G DD + KP    E+LARV     R  
Sbjct: 62  EVLADLRGHGAKLPILILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRL-RTN 120

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +  + ++        + +    R  +V  +   LP RE  + E    + G+ +++ Q+  
Sbjct: 121 IHQSTSQPLTMVARNVVLDLRARKAKVHDQWIELPAREFILTEAFFQHPGQVLSRQQLLD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G +D     N+V+ ++  LRKKL    G D + + R +GY ++
Sbjct: 181 RVWG-YDYDPGSNIVDVYVGYLRKKL----GDDLIQTVRGVGYRLN 221


>gi|311033061|ref|ZP_07711151.1| DNA-binding response regulator [Bacillus sp. m3-13]
          Length = 232

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 91/220 (41%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++    +++        +G  +    + + +   +   + D   +   L        E
Sbjct: 12  LIVESDQEIRNLLRTNLEKEGYEV--LEAADGKRAKKMIPQLDPCILLLDLSLPKISGEE 69

Query: 63  LPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + R +R    S +P+I IS        +  F  G DD V KP    E++ R+ A+ RR  
Sbjct: 70  ICRWVRNDLKSLMPIIIISGKTEESDIIKGFKLGADDYVVKPFRPAELMVRIEAVLRRTA 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +       +     +  + G    L + E ++L + M N  + + + QI ++IY  
Sbjct: 130 ARCGKLSFTGFTLKPAKGEALINGSPLNLTKFEFKLLHFFMQNSDQVLTREQILNSIYEH 189

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ V +  ++ HI  LR+K++     D + + R +GY  
Sbjct: 190 HEKMVSDRTIDVHIKHLREKIKMYTPKDYIQTVRGMGYKF 229


>gi|269957298|ref|YP_003327087.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305979|gb|ACZ31529.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 226

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +       SA+ D+  ++  L   G+   +
Sbjct: 6   LVVDDDTALAEMIGMVLRTEGFDPVFCADGDGALAAFRSAQPDIVLLDVMLP--GKDGTQ 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           + R IRA S VP+I ++        +   +SG DD V KP   +E++AR+ A  RR +  
Sbjct: 64  VAREIRAESGVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELVARMRARLRRQEDP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R   G + +   G      G    L   E  +L  L     +   +  +   ++G +
Sbjct: 124 GPERLLVGDLEIDVTGHTVTRAGGRISLTPLEFDLLVALARKPWQVFTREVLLEKVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             + +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHSADTRLVNVHVQRLRSKVERDPENPEIVLTVRGVGYK 221


>gi|255280412|ref|ZP_05344967.1| phosphate regulon response regulator PhoB [Bryantella formatexigens
           DSM 14469]
 gi|255268877|gb|EET62082.1| phosphate regulon response regulator PhoB [Bryantella formatexigens
           DSM 14469]
          Length = 223

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       + G S+E F   +      S  + D+  ++  L       
Sbjct: 3   LIYILEDDKNIREIESYSLKNSGYSVEEFEYAKPFWNKVSERKPDLVLLDIMLPDS--DG 60

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ + +R      +VP++ ++   S    +   D+G DD + KP    E+++RV A+ R
Sbjct: 61  VEVLKKLRRNPETKKVPVVMVTAKSSEIDKVKGLDNGADDYITKPFGVMELISRVKAVLR 120

Query: 118 RLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R+             I + ++ R   V      L  +E  +L+  + N G  +A+  I  
Sbjct: 121 RVNQMEEEKLMRLHEIFMDNEKRMVYVSDVPCELTYKEFELLKLFLQNAGIVMARESIME 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G+ D   E   ++ HI  LR+KL   +    + + R +GY I+
Sbjct: 181 RVWGV-DFEGESRTLDMHIKTLRQKLG--VAGKYIKTVRNVGYRIE 223


>gi|271964907|ref|YP_003339103.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508082|gb|ACZ86360.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +++  +  E    L      DV  ++  L         
Sbjct: 4   LVVEDERRMAAALQRGLQAEGFAVDLAHDGEDGLHLARQGDYDVVVLDIMLPR--LSGYN 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA    VP++ +S         D  D G DD + KP  +  ++AR+ A+ RR   
Sbjct: 62  VCKQLRAEENWVPILMLSAKDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRRGAN 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G + +    R          L  RE  +LEYLM    + V+KT+I   ++  
Sbjct: 122 RRPSVLRAGDLSLDPARRRVSRGETPVELTPREFALLEYLMRRHDEVVSKTEILEHVWDT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + NVVE ++  LR+K+        + + R  GY +
Sbjct: 182 FD--TDPNVVEVYVGYLRRKIDVPFSRTALQTVRGAGYRL 219


>gi|17227625|ref|NP_484173.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75907720|ref|YP_322016.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|17135107|dbj|BAB77653.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75701445|gb|ABA21121.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 247

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 93/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +    G+   L   E  +L  L+   G+ V+ ++
Sbjct: 122 TDRIPQAAKHSEILNYGPLTLVPERFEAIWFGQTVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILREVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|308205569|gb|ADO19044.1| two component transcriptional regulator [Nostoc flagelliforme str.
           Sunitezuoqi]
          Length = 232

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +    L   +G +++             +   D+  ++  L   G+  L
Sbjct: 3   ILLVDDEVELTEPLSRLLTREGYTVDAAYDGTSGNEHAQTGSYDLLILDWMLP--GKTGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ + +R      P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  EICQQLRRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSG 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +  R     + +  + +    QG +  L ++E ++L+Y M + G+ +   QI  
Sbjct: 121 SQTYETTTGRLIVADLELDCENQVAYRQGRIIELSQKESQLLQYFMEHTGQLMTHAQIME 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   +E    NV+ + I  LR+K+        + +    GY  
Sbjct: 181 NLW-QEEEQPSSNVIAALIRLLRRKIEVGKETTLIHTVYGKGYRF 224


>gi|326778918|ref|ZP_08238183.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326659251|gb|EGE44097.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 267

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  +  +   L   G   LE
Sbjct: 47  LLAEDDASISEPLARALRREGYEVEVRQ--DGPTALDAGLQGGIDLVVLDLGLPGMDGLE 104

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    +P++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 105 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 164

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 165 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 224

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 225 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 265


>gi|296141305|ref|YP_003648548.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 235

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++         G  +              +   DV  ++  +   G   L 
Sbjct: 13  LVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRTFHPDVMVLDIMMP--GMDGLG 70

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R      P + ++   S++  +     G DD V KP    E++AR+  + RR   
Sbjct: 71  LLKRLRQDGIDAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRRSGF 130

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R +   + +  +  +    GE+  L   E  +L Y M N G  ++K +I   +
Sbjct: 131 GQKEEITRLKFADLELDDETHEVWKAGELVSLSPTEFTLLRYFMVNAGVVLSKPRILDHV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 191 W-HYDFGGDVNVVESYVSYLRRKV-DTGEPRLIHTLRGVGYVL 231


>gi|54294190|ref|YP_126605.1| hypothetical protein lpl1254 [Legionella pneumophila str. Lens]
 gi|54297210|ref|YP_123579.1| hypothetical protein lpp1255 [Legionella pneumophila str. Paris]
 gi|148358833|ref|YP_001250040.1| DNA-binding response regulator [Legionella pneumophila str. Corby]
 gi|296106878|ref|YP_003618578.1| DNA-binding response regulator [Legionella pneumophila 2300/99
           Alcoy]
 gi|53750995|emb|CAH12406.1| hypothetical protein lpp1255 [Legionella pneumophila str. Paris]
 gi|53754022|emb|CAH15493.1| hypothetical protein lpl1254 [Legionella pneumophila str. Lens]
 gi|148280606|gb|ABQ54694.1| DNA-binding response regulator [Legionella pneumophila str. Corby]
 gi|295648779|gb|ADG24626.1| DNA-binding response regulator [Legionella pneumophila 2300/99
           Alcoy]
 gi|307610003|emb|CBW99535.1| hypothetical protein LPW_13061 [Legionella pneumophila 130b]
          Length = 225

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 9/214 (4%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AH 70
            D   A     G  ++     E       S   ++  ++  L       L L + IR   
Sbjct: 13  GDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLP--KLSGLSLLQNIRHDG 70

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETG 129
           +  P+I ++   S++  +   DSG DD + KP    E+ AR+ A+ RR +  +++  +  
Sbjct: 71  NSTPVIILTARESIEDRVKGLDSGADDYLIKPFDLNELSARIRALVRRSQGRADSVLQYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +        V   +  +PRRE  +L+ L+ N G+ +++ Q+  +IYG ++E V+ N 
Sbjct: 131 NITLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG-WEEDVDSNA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +E HI  LRKKL      + + + R +GY  + N
Sbjct: 190 LEVHIHNLRKKL----NANFIRTIRGVGYMAEKN 219


>gi|31791784|ref|NP_854277.1| putative two component DNA binding transcriptional regulatory
           protein TCRA [Mycobacterium bovis AF2122/97]
 gi|121636520|ref|YP_976743.1| putative two component DNA binding transcriptional regulatory
           protein tcrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224988992|ref|YP_002643679.1| putative two component DNA binding transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31617371|emb|CAD93480.1| PUTATIVE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
           PROTEIN TCRA [Mycobacterium bovis AF2122/97]
 gi|121492167|emb|CAL70633.1| Putative two component DNA binding Transcriptional regulatory
           protein tcrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224772105|dbj|BAH24911.1| putative two component DNA binding transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 253

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++G +++                 D   ++  L   G    
Sbjct: 25  ILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLP--GIDGF 82

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+  R+ R     P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G +R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              EA   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 203 AAYEAR-SNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242


>gi|117676235|ref|YP_863811.1| DNA-binding transcriptional activator CusR [Shewanella sp. ANA-3]
 gi|117615059|gb|ABK50512.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella sp. ANA-3]
          Length = 226

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPD--MNGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++     + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEV 223


>gi|294341402|emb|CAZ89819.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As]
          Length = 239

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG +      G +++        +    S+  D+  ++  L        
Sbjct: 3   ILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGLPR--LSGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA    VP++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR +
Sbjct: 61  EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA--I 177
             ++   + GP+     GR   + G V  L  RE  +LE L+   G+ V+K Q+     +
Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+   +G   + + R LGY ++
Sbjct: 181 WG---EEVSTNAIEVYVHRLRKKIE--VGPVRIATVRGLGYCLE 219


>gi|255526457|ref|ZP_05393368.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296184830|ref|ZP_06853241.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509839|gb|EET86168.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050612|gb|EFG90035.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D        +   +    + +    +    + D+  ++  L       L
Sbjct: 4   ILIVEDDEDIRDILKIYLKAESFEIWEAENGKQAFEILEDKKPDLVILDLMLPD--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + IR   + P+I I+   + Q  +     G DD + KP +  E++ARV A  RR K 
Sbjct: 62  NICKSIRTKYKYPIIMITAKTADQDKIIGLTYGADDYITKPFNPLEVMARVKAQLRRYKE 121

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +    R   + G+   L   E  +LE L+ NRG+ ++  ++F 
Sbjct: 122 YGENTKEDSTIYYKGLILDRKSRQANLNGKELKLTPTEFNLLEILLLNRGQVLSGEKLFH 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            +      +   N V  HI  LR+K+       + + +   +GY I+
Sbjct: 182 LLREDEYYSKSTNTVTVHIRNLREKMEESFEHPEYIKTVWGVGYIIE 228


>gi|254304225|ref|ZP_04971583.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324417|gb|EDK89667.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 224

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 101/224 (45%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +  S++  +  + EE L+     D   I   ++       
Sbjct: 3   ILVVEDEKDLNNIITKHLKKNNFSVD--SVFDGEEALEYLNYGDYDVIILDVMMPKMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +RA+     ++ ++    +   +   D G DD + KP   RE++AR+ A+ RR  
Sbjct: 61  EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  +   + V    +     G+   L  +E  +LEYL+ N+G+ +++ +I   ++ 
Sbjct: 121 GNISNELQIDDLIVDISKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +    E N+++  I  +RKK+        + +KR LGY +  +
Sbjct: 181 -YAYEGESNIIDVLIKNIRKKIDIGDSKPIIHTKRGLGYVLKED 223


>gi|254251535|ref|ZP_04944853.1| DNA-binding response regulator [Burkholderia dolosa AUO158]
 gi|124894144|gb|EAY68024.1| DNA-binding response regulator [Burkholderia dolosa AUO158]
          Length = 251

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     E    L +   E    +   L       +
Sbjct: 34  ILLVEDDRMIAEGVRKALRSDGFAVDWVQDGEA--ALTALGGEAYDLLLLDLGLPKRDGI 91

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 92  DVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 151

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 152 GRSESLIRHGTLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 211

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 212 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 247


>gi|148546876|ref|YP_001266978.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148510934|gb|ABQ77794.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|313497928|gb|ADR59294.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 227

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G  A     G++++   +      +  +A+ DV  ++  L    E  L+
Sbjct: 4   LLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMILDLGLPD--EDGLK 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R +R   +  P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N  E GP+R      +  + G+   L RRE+ +L+ L+ N G+ ++  Q+   +YG 
Sbjct: 122 RAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQALLQNPGRVLSSEQLKDCVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL    G   V++ R LGY +
Sbjct: 182 SDE-VESNALNVHIHHLRRKL----GNGIVETVRGLGYRL 216


>gi|26986792|ref|NP_742217.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           putida KT2440]
 gi|148545318|ref|YP_001265420.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031082|ref|YP_001666313.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719251|ref|YP_001746939.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|325272074|ref|ZP_08138510.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|24981387|gb|AAN65681.1|AE016195_2 DNA-binding heavy metal response regulator, putative [Pseudomonas
           putida KT2440]
 gi|148509376|gb|ABQ76236.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166857570|gb|ABY95977.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757254|gb|ACA70570.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
 gi|324102770|gb|EGC00181.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D     +       + G  ++  ++     +L      ++  ++  L    G +V
Sbjct: 3   ILVIEDEVKTAEYVRQGLTECGYVVDCVHTGSDGLFLAKQHEYELIILDINLPEMDGWQV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R  R +    ++ ++    L   +   ++G DD + KP    E+LARV A+ RR  
Sbjct: 63  LELLR--RKNCPSRIMMLTARSRLADKVRGLENGADDYLIKPFEFPELLARVRALMRRSD 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S        + +          G+   L  +E  +L YLM N G  +++TQI S ++
Sbjct: 121 HPASVEVIRVADLELDQSRHRAFRDGQRIDLTTKEFALLHYLMRNTGVVLSRTQIISQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLE 222


>gi|295097784|emb|CBK86874.1| heavy metal response regulator [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 226

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 103/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TLITESQFKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N  G   + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLEV 223


>gi|269791708|ref|YP_003316612.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099343|gb|ACZ18330.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 228

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++     F   G ++      +    L  +A  D+  ++  L        
Sbjct: 5   ILVVEDEEGIREILSEAFRRQGYTVMCAADGDQAVDLALTAVPDLIILDLMLP--KMDGW 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IR   +   VP+I ++     +  +   ++G DD V KP    E++ARV A  RR
Sbjct: 63  EVCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHLRR 122

Query: 119 L---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +    +   G + +   G D  V G    L   E R+LE LM+ RG+ V+K +I  
Sbjct: 123 SDSPQGGEVQISMGNLTLEPQG-DVLVDGRPLDLSPTEHRLLEVLMSGRGRLVSKEEILG 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G      +   V+ ++ +LR+KL        + + R  GY +
Sbjct: 182 KIWG--HVGSDSRTVDVNVFRLRRKLEEAGARVTIKTVRGRGYRV 224


>gi|260554524|ref|ZP_05826745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|260411066|gb|EEX04363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
          Length = 228

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 97/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L        
Sbjct: 8   ILIIEDEMKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPD--IDGW 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 66  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 126 LQENELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNI 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 186 -NFDTDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 224


>gi|228899255|ref|ZP_04063518.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228963662|ref|ZP_04124806.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796010|gb|EEM43474.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860286|gb|EEN04683.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 8   LLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMP--GMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|226314802|ref|YP_002774698.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097752|dbj|BAH46194.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +  ++E     E           D+  ++  +  + +  L
Sbjct: 3   ILLVEDDPKLGPLIRYKLSQEYHTVEWVADPELVMEYVQQTYYDLYILDWMM--QKKSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   IRA +   P++ ++   ++   +   + G DD + KP    E+ AR+ A+ RR+ 
Sbjct: 61  ELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRIP 120

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           VS       E   I +     +   +G++  L ++E ++L++ + +  K + + QI + +
Sbjct: 121 VSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNYV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +GL D  +  N V++ I  LRKK+        + + R +GY +
Sbjct: 181 WGL-DATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRL 222


>gi|295836986|ref|ZP_06823919.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
 gi|295826313|gb|EDY44378.2| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
          Length = 260

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E            +    D+  ++  L   G   LE
Sbjct: 40  LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGTQGAIDLVVLDLGLP--GMDGLE 97

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +RA    VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 98  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 218 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 258


>gi|154503490|ref|ZP_02040550.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149]
 gi|153795590|gb|EDN78010.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149]
          Length = 224

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGD-DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +           D +  + F+  E    L +  R  V  ++  L   G   
Sbjct: 4   ILIVEDDMNINGLLKEALEKADYLCTQAFSGTEAR-MLLAMNRYSVVLLDLMLP--GISG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR     P+I ++   ++   ++   SG DD V KP   +E+LARVA   RR++
Sbjct: 61  EEVLQEIRKQGNTPVIILTAKDTIDDKVEVLQSGADDYVTKPFDIKEVLARVAVQIRRME 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSAI 177
              S        + +  +     V     P + R+E  ILE L+ +  K  +K +IF   
Sbjct: 121 GSFSEGNLVYQGLELDRENFCVRVDQTELPKITRQEFSILELLLKHPKKVFSKEEIFEYA 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +       E   ++ HIS +RKK+++    + +++   +GY +
Sbjct: 181 WEEA-YMGETKTLDVHISNIRKKIKSVTSKEYIETIWGIGYRL 222


>gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1627

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L      A+  +   ++E  +       L  +   D+  ++  L       +
Sbjct: 3   ILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVMLPR--LDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R IR+   Q+P++ ++   S        D+G DD V KP    E++ARV A+ RR +
Sbjct: 61  SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G +++     +      +  L  +E  +LE  + +  +  + + I   I+ 
Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D   EE  V +HI  LR KLRN     D V++   +GY +
Sbjct: 181 YEDTPGEE-AVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRL 221



 Score = 71.5 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + +DD   +      L    G+ +   +              D+  ++  +       +E
Sbjct: 382 LAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYT--NGIE 439

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L +++R     S++P++ ++ +   +     F  G DD V+KPI   E++ R+     R+
Sbjct: 440 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLERV 499

Query: 120 KVSNNRAETGPI 131
           K+    +E+  +
Sbjct: 500 KLLRRVSESRGV 511



 Score = 51.1 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 1    MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
            + ++ DD  L++    +L    G  +    + +      S+   DV  ++  + G  G +
Sbjct: 1378 LVLVCDDDPLIRTELQSLLEQGGYRVFTVATGQEAIASASTQHPDVIVLDLLMPGMNGWE 1437

Query: 60   VLELPRIIRAHSQVPLIG 77
             + + +       +P++ 
Sbjct: 1438 TMAMLKESTETKHIPIVI 1455



 Score = 50.3 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 2    FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++++D A + + ++ LF      +E F++    E +  S   +   +   LI       
Sbjct: 1501 ILIVEDDADLAELFVTLFER--HDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGF 1558

Query: 62   ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNK-PIHHREILARVAAIYR 117
             +   ++ H     +P++  S     ++       G  + + K  +  +E   RV  + +
Sbjct: 1559 AVVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQ 1618

Query: 118  RLKVSNNR 125
            R+  +N R
Sbjct: 1619 RITPTNVR 1626


>gi|88809226|ref|ZP_01124735.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88787168|gb|EAR18326.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 235

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +    +     D +  +G N       L    R D+  ++  L       +
Sbjct: 9   LLIVDDDPELLQFLLEELSQDSIVCQGANCGAEALLLLRQQRFDLVVLDWNLPDF--NGI 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++ +  L+  +   D G DD + KP    E+ ARV A  RR +
Sbjct: 67  EICRRLRSSGDTTPVLMLTAHHDLEDRVQALDLGADDYITKPFELPELHARVRAQLRRSR 126

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  + +   G +R+    R          L +RE  +L +L+ ++G    + QI  
Sbjct: 127 YPSVERPSEQLTLGDLRINLMTRTVRRGERDVSLTQREFDLLAFLVKHQGTVQPREQILD 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++G      + N ++ ++  LR+KL        + + R +G+ 
Sbjct: 187 SVWGAP-FVGDPNTLDVYMGYLRRKLEGAELPKLLHTVRGVGFM 229


>gi|170023956|ref|YP_001720461.1| DNA-binding transcriptional regulator PhoP [Yersinia
           pseudotuberculosis YPIII]
 gi|1617255|emb|CAA47148.1| phoP [Yersinia pseudotuberculosis]
 gi|49617497|gb|AAT67459.1| nonfunctional two-component system response regulator [Yersinia
           pseudotuberculosis]
 gi|169750490|gb|ACA68008.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
          Length = 223

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLP--GEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H   +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIEPLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRGQGYRFDVN 223


>gi|311064059|ref|YP_003970784.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310866378|gb|ADP35747.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 245

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +  D  D    G    L   E ++L YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVGDLEINEDSHDVSRAGYAIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+   +  D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIMVTDDNGEQHKVTPLIETKRGIGYMI 238


>gi|310827238|ref|YP_003959595.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612]
 gi|308738972|gb|ADO36632.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612]
          Length = 223

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 99/221 (44%), Gaps = 3/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     AL  ++G S++   +    E      R D+  ++  L        
Sbjct: 4   ILIVEDERQIVKHLRALLEEEGFSVDTAATRAEAESALEGDRFDLILLDLMLPD--GNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I      P+I ++      + +  F+ G DD + KP    E++ARV    RR   
Sbjct: 62  ALCTEILHRGNTPVIFLTALDDEASIVTGFNLGADDYITKPFKPMELVARVKNSLRRSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  + G + V + G      G+   L   E R+L  L+++RG+ ++++++   I+   
Sbjct: 122 AQSVFQLGNLSVDTAGASVRRDGQEIVLSALEYRLLLTLLSHRGEVLSRSRLLQEIWDAS 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            + V +N +  +I +LR+K+  +      + + R LGY ++
Sbjct: 182 GDFVNDNTLTVYIKRLREKIEKDPAEPRIIKTVRGLGYKVE 222


>gi|929822|emb|CAA62008.1| FeuP [Rhizobium leguminosarum]
          Length = 223

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPE--MDGV 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    R A   VP++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|300717533|ref|YP_003742336.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299063369|emb|CAX60489.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 235

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 5/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +    +                +           D+  ++  L   G   
Sbjct: 9   LILVVEDEPKLGQLMVDYLQAANYRTHHLLRGDEVLDWVKQTPPDMILLDLMLP--GMDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I +R K
Sbjct: 67  LTVCREIRRFSDLPIMMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILKRCK 126

Query: 121 VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   A+   + V  + R           L   E R+L+ L    GK  ++  + + +Y 
Sbjct: 127 RTPEEAQKASLLVIDENRFQASWDQGPLDLTPAEFRLLKTLAQEPGKVFSREMLLNHLYD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
            +   V +  ++SHI  LR+KL       P + +   +GY  + +
Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLELLDSDQPFIRAVYGMGYRWEAD 230


>gi|257870747|ref|ZP_05650400.1| two component transcriptional regulator [Enterococcus gallinarum
           EG2]
 gi|257804911|gb|EEV33733.1| two component transcriptional regulator [Enterococcus gallinarum
           EG2]
          Length = 232

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  +   N          + +  +  ++  L   G    E
Sbjct: 6   LIIEDDEDISMIEKDFLEMEGYEVHIVNDGCVGYHEALTEKYQLILLDVMLP--GMDGHE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------IY 116
           + R IR    +P+I ++        L     G DD ++KP    E++ARV A        
Sbjct: 64  ICRNIRDKVDIPIIMVTAKSEELEKLRGLGIGADDYISKPFSPTELVARVKANIAQYNRI 123

Query: 117 RRLKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +R + +   ++  E G IR+ S      V G       RE  +L +LM N     +K Q+
Sbjct: 124 KRGQQTETVSSEIELGGIRINSQTHRVYVDGIEVDCKHREYELLLFLMENPEIVFSKEQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +  I+G+ +       V  HI++LR+K+  +      + +    GY  
Sbjct: 184 YEKIWGM-EALGNIRTVAVHINRLREKVEEDPTNPQYIQTVWGAGYRF 230


>gi|329925042|ref|ZP_08279986.1| transcriptional regulatory protein WalR [Paenibacillus sp. HGF5]
 gi|328940161|gb|EGG36493.1| transcriptional regulatory protein WalR [Paenibacillus sp. HGF5]
          Length = 243

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 18/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    + +    ++ +  +    +   L+  G+  +
Sbjct: 5   ILVVDDEQPIADILKFNLEKEGYEV--ICAFDGISAVEIALTQRPDLMLLDLMLPGKDGM 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA + Q+P+I ++        +   + G DD V KP   REILARV A  RR +
Sbjct: 63  DVCREVRAANLQIPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAHLRRQQ 122

Query: 121 VSNNRAETGP-------------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             +N A+                + + +D       GE   L  RE  ++ YL  N GK 
Sbjct: 123 KPDNSADNTGGTSAGGQGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           + +  +  A++G F+   +   V+  I +LR+K+       + + ++R LGY
Sbjct: 183 MTREHLLQAVWG-FEYFGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGY 233


>gi|134276940|ref|YP_537039.2| Ycf27 [Porphyra yezoensis]
 gi|125991250|sp|Q1XDC9|YCF27_PORYE RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
          Length = 243

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +   ++ E    +       +  ++  +        
Sbjct: 8   ILVVDDEASIRRILETRLTIIGYEVITASNGEEALLVFRKEYPSLVVLDVMMP--KLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR   
Sbjct: 66  GVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADK 125

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++     G +++ ++ R      E   L   E  +LE L++  G+  ++  I
Sbjct: 126 ITTSLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
              ++G   +  V+  VV+ HIS+LR KL +     D + + R  GY
Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGY 232


>gi|206976990|ref|ZP_03237891.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962303|ref|YP_002340873.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222098284|ref|YP_002532341.1| two-component response regulator [Bacillus cereus Q1]
 gi|229141548|ref|ZP_04270082.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206744795|gb|EDZ56201.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065924|gb|ACJ80174.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221242342|gb|ACM15052.1| Two-component response regulator [Bacillus cereus Q1]
 gi|228641948|gb|EEK98245.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 229

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEVVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RR- 118
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +   R+ 
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKI 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L+  ++      I V    R   V      L   E  IL YLM N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|145636091|ref|ZP_01791761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittHH]
 gi|145270613|gb|EDK10546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittHH]
          Length = 231

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            ++++D   +++            +    + +F+  +        +  ++  L   G   
Sbjct: 5   ILIVEDECAIREMITLFLSQKYYDV--IEASDFKTAINKIKENPKLILLDWMLP--GRSG 60

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           ++  + I+     + +P+I ++   + +  +   ++G DD + KP   + +LAR+ A++R
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120

Query: 118 RLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R+    ++  +   + +  + +    Q +   L   E ++L + M +  K  ++ Q+ + 
Sbjct: 121 RIYEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNR 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+   D  VE   V+S+I +LR+ L      D + + R  GY  
Sbjct: 181 IW-HNDLEVEYRTVDSYIRRLRRNLAPFQCEDYIQTVRGSGYRF 223


>gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
          Length = 223

 Score =  224 bits (571), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 103/219 (47%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +  +++     E   ++  +   DV  ++  L        E
Sbjct: 4   LVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVH--DGWE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +R +    P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR  +
Sbjct: 62  ILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSE 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + +   G + + +  +     G+   L ++E +ILEYL+ N+ + V K ++   ++  
Sbjct: 122 SKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLW-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD+ V  +V+ SHI  LRKK+        + + R +GY 
Sbjct: 181 FDDEVFSDVLRSHIKNLRKKVDKGFKRKIIHTVRGIGYV 219


>gi|329888201|ref|ZP_08266799.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC
           11568]
 gi|328846757|gb|EGF96319.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC
           11568]
          Length = 223

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A      +    + G  +       F          DV  ++  +       +
Sbjct: 3   ILVVEDDAEAATAMVRGLSEAGHEVTHAVDGAFGLLESQKGGYDVYVVDRMMPR--LDGV 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   IR      P++ +S    ++  +    +G DD + KP    E++ARV A+ RR +
Sbjct: 61  AMVETIRKGGDQTPVLFLSALGEVEDRVTGLKAGGDDYLVKPYALAELVARVEALSRRRE 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +    R     G+   L  RE ++LE+LM + G+ V +T +   ++
Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRDGQEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +    + NV++ HIS+LR K+        + + R  GY ++
Sbjct: 181 -EYHFDPQTNVIDVHISRLRSKIDKGFDKAMLQTVRGAGYRLE 222


>gi|329947016|ref|ZP_08294428.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526827|gb|EGF53840.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 219

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +           G +     +      L      D+  ++  L        
Sbjct: 4   ILIVEDESRIVAFLTKGLKAAGFTTHTTAAGREAVELALQTSFDLIILDVGLPD--IDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P+I ++   S+   +   + G DD + KP    E+LAR+    R   
Sbjct: 62  EVLQQLRGQGVAAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPEA 121

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  R     + +    R   ++G    L  RE  + E  M + G+ +++ Q+ SA++
Sbjct: 122 AGADQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GL D     NVVE ++S LR KL    G D V++ R +GY +
Sbjct: 182 GL-DFDPGSNVVEVYVSYLRNKL----GRDRVETVRGMGYRL 218


>gi|47567988|ref|ZP_00238694.1| two-component response regulator [Bacillus cereus G9241]
 gi|47555291|gb|EAL13636.1| two-component response regulator [Bacillus cereus G9241]
          Length = 229

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   +      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTIDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|330896968|gb|EGH28534.1| two component transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330977797|gb|EGH77700.1| two component transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 227

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G +A     G++L+   S      +  +A+ DV  ++  L    E  + 
Sbjct: 4   LLCEDDELIASGIVAGLHAQGLNLDRVGSASAAHAILDAAQFDVMILDLGLPD--EDGIS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R +R+    +P++ ++    +   +    +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLRSLRSRGHNIPVLILTARDDVDDRVKGLHAGADDYMVKPFDLRELFARLHTLVRRVAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N  E G +      R+  + G    L RRE+ +L  L+ N G+ ++  Q+  ++YG 
Sbjct: 122 RTVNHIEHGILTYDPSTRETWLSGTAIDLSRREQAVLLALLNNPGRVLSLEQLKDSVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL    G   +++ R  GY +
Sbjct: 182 TDE-VESNALNVHIFHLRRKL----GGQIIETVRGSGYRL 216


>gi|325275490|ref|ZP_08141410.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324099375|gb|EGB97301.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 227

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G  A     G++++   +      +  +A+ DV  ++  L    E  L+
Sbjct: 4   LLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMVLDLGLPD--EDGLK 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R +R   +  P++ ++   ++   +D   +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N  E GP+R      +  + G+   L RRE+ +L+ L+ N G+ ++  Q+   +YG 
Sbjct: 122 RAVNVIEHGPLRYDPSSCEATLAGQQVDLSRREQALLQALLQNPGRVLSSEQLKDCVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL    G   V++ R LGY +
Sbjct: 182 SDE-VESNALNVHIHHLRRKL----GNGIVETVRGLGYRL 216


>gi|300867618|ref|ZP_07112266.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300334379|emb|CBN57436.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 233

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D    +   +G  ++  ++        +    D+  ++  L   G+  L
Sbjct: 3   ILLVDDEIELTDPLSRVLTREGYEVDVADNGATGSEFATQGNYDLLILDWMLP--GKTGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + +R+  +  P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  AICQKLRSEGRATPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRPS 120

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                       +NR +   + +  + +    +G    L  +E ++LEYLM + G+ +  
Sbjct: 121 ILETGSSNFSGDSNRLQVADLELDFENQLAYRRGRTIDLSEKECQLLEYLMRHPGQLLTH 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            QI   ++    E    NV+ + I  LR+K+        + +    GY +
Sbjct: 181 EQIHQYLW-PDGEKPSSNVLAAQIRLLRRKIEAAGDLPLIHTVYGKGYRL 229


>gi|218248373|ref|YP_002373744.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060302|ref|YP_003138190.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218168851|gb|ACK67588.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590468|gb|ACV01355.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 231

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 103/231 (44%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQS-SAREDVSAIEAFLIGKGEK 59
            +L++D + + +            ++      E  ++L+   +   +   +  L      
Sbjct: 3   ILLVEDESDLGNAIKRTLIQHNYIVDWAQDGKEGLDYLEIGLSHYTLGIFDWLLP--KLS 60

Query: 60  VLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            ++L R +R H S +P++ ++   S +  +   D+G DD + KP    E+LAR+ A+ RR
Sbjct: 61  GVDLIRKVRQHKSSLPILMLTAKDSEEDKVIGLDAGADDYLVKPFGMAELLARLRALQRR 120

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQ 172
             +++  + + G + +         Q +        L  +E ++LEY + +  + V + Q
Sbjct: 121 SPQINPQQLKVGNLTLDYSTYTIFCQDKEGDNQTIALTNKEFQLLEYFLHHPNQIVTRDQ 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + S ++  ++     NVV + I  LR+KL    G + +++   LGY    N
Sbjct: 181 LLSQLW-EWESEPMSNVVAAQIRLLRRKLAPYGGDNWIETIYGLGYRFIVN 230


>gi|88808215|ref|ZP_01123726.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88788254|gb|EAR19410.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 277

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+   +      G  +      E    L      D+  ++  L        
Sbjct: 34  LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALELFHRESPDLVVLDVMLP--KLDGF 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+  
Sbjct: 92  AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGR 151

Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  AE             G + V ++ R      E   L   E  +LE L    G+ V 
Sbjct: 152 GSASAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVP 211

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           + +I   ++G     + +  VV+ ++++LR KL  +    + + + R +GYS
Sbjct: 212 RAEILEQLWGYPPRRSADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYS 263


>gi|168218156|ref|ZP_02643781.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182379830|gb|EDT77309.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 231

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G   E   +      +    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALNIIREIKFDLILLDLMLPE--IDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A+ RR 
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   N  + G + V    R+     +   L  +E  +L+ L+ N+G  + +  +   I
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVIKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|167561730|ref|ZP_02354646.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167568964|ref|ZP_02361838.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 220

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     E    L +   E    +   L       +
Sbjct: 3   ILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAA--LTALGGEAYDLLLLDLGLPKRDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 216


>gi|167647848|ref|YP_001685511.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350278|gb|ABZ73013.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 223

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++I+D             + G         E           DV  ++  +    G +V
Sbjct: 3   ILIIEDDLEAAAAMSHGLTEAGYQCVHAPDGEAGLTAAGKGGFDVMIVDRMMPKKNGVEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R  R     P++ +S    +   +    +G DD + KP    E++ARV A+ RR +
Sbjct: 63  VETLR--REGDNTPVLFLSALGEVGDRVVGLKAGADDYLVKPYAFPELIARVEALSRRRE 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +    R    QG+   L  RE ++LE++M + G+ V +T +   ++
Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +    + NV++ HIS+LR K+        + + R  GY +D
Sbjct: 181 -EYHFDPQTNVIDVHISRLRSKIDKGFDRAMLQTVRGAGYRLD 222


>gi|2245588|gb|AAB92482.1| IrlR [Burkholderia pseudomallei 1026b]
          Length = 229

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 22/231 (9%)

Query: 2   FVLIDDRA---------LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++++D           L + G+IA + +DGV+  G +  E EE+       D+  ++  
Sbjct: 3   ILIVEDEPKTGMYVRKGLTEAGFIADWVEDGVT--GLHQAETEEY-------DLIILDVM 53

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L   G     +   +R     P++ ++    +   +   + G DD V KP    E++ARV
Sbjct: 54  LP--GHDGWTVLERLRRAHSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARV 111

Query: 113 AAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +I RR +   +       + +    R    QG+V  L  +E  +L  LM   G+ + + 
Sbjct: 112 RSILRRGQARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRA 171

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            I S ++ + +   + NVV++ I +LR K+ +      + + R +GY ++ 
Sbjct: 172 TIASQVWDM-NFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLEV 221


>gi|160894855|ref|ZP_02075629.1| hypothetical protein CLOL250_02405 [Clostridium sp. L2-50]
 gi|156863286|gb|EDO56717.1| hypothetical protein CLOL250_02405 [Clostridium sp. L2-50]
          Length = 239

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAR-EDVSAIEAFLIG-KGE 58
            ++++D   + +         G S E  F+  E +  L        +  ++  L G  GE
Sbjct: 16  ILIVEDDTNINNLLQEALSKAGYSCEQAFSGTEAKLLLNMQEHSYALVLLDLMLPGITGE 75

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            VLE    IR    +P+I ++   SL   +    SG DD + KP   RE+LAR+    R 
Sbjct: 76  AVLE---EIRKKGNLPVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQLRH 132

Query: 119 L---KVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               ++  +      + +        + G++ P + R+E  ILE L+ N  +  +K  IF
Sbjct: 133 TEEKEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKEDIF 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 193 EYAWDEP-YMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 237


>gi|167032707|ref|YP_001667938.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166859195|gb|ABY97602.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 226

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A           + G + E     E  ++L  +   D+  ++  L   G    
Sbjct: 3   LLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLP--GRDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +R      P++ ++   +++  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       +R+    R  E  G    L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGTRIDLTAKEFCLLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLE 222


>gi|150017794|ref|YP_001310048.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904259|gb|ABR35092.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 238

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D   A    DG  +    +++ +  L   + E++  I   L+       
Sbjct: 7   ILVVDDEQNILDVIKAYLEKDGFDV--ITAMDGKSALDIYSNENIHLIVLDLMLPKMTGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IRA S VP+I ++        ++    G DD + KP   RE++ RV A+ RR   
Sbjct: 65  EVCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYR 124

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +          G + V       + QG V  L   E +IL   ++N  +  ++ ++  
Sbjct: 125 DFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKLVE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +G  +    +  V+S+I  +R+K+  N      + +   +GY  
Sbjct: 185 KAFGA-NYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKF 229


>gi|254470779|ref|ZP_05084182.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211959921|gb|EEA95118.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 233

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 96/229 (41%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE--- 58
            +++DD A +++                N++  E   ++ A      ++  ++  G    
Sbjct: 4   ILVVDDDAHIREVITFAIEKANY-----NTIIAENGFEAVACFKQQPVDLIILDIGMPEM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R IR HS+VP++ +S        +   + G DD V KP   RE++AR+ AI +R
Sbjct: 59  DGFEVCREIRKHSEVPILFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARIGAILKR 118

Query: 119 L-------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +   ++ + G +++    R     G+   L   E  IL+  +       ++ 
Sbjct: 119 TNGPKITGEAKPSQLQAGGVQLDPSYRSVAYNGQPVELTSIEFEILKLFLDRPRMTFSRD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +I    Y   +  V +  ++SHI  +R KL      + +++   +G+ +
Sbjct: 179 RIIDLAY-PPNIHVSDRTIDSHIRNVRSKLTTAGAPNLIETVHAVGFRL 226


>gi|206970631|ref|ZP_03231583.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734267|gb|EDZ51437.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 232

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDQDIVRFVKANLMQEGFKV--FSAHNGEESLEIINNNSIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A R +     +I
Sbjct: 124 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 184 YESVWNERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|56540665|gb|AAV92786.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +          G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELTVGNLTLNMGRHQTWKDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|42784015|ref|NP_981262.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739945|gb|AAS43870.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 229

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYIV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVMVDKTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|320530934|ref|ZP_08031967.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|320136799|gb|EFW28748.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 235

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G S++  +  +  + +  +    +  ++  L   G    
Sbjct: 4   ILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLP--GADGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ +S        +     G DD + KP    E+ ARV A   R   
Sbjct: 62  AICRAVRKELDIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITRYNR 121

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G + +        V G    L  RE  +L +L  +     +K  ++
Sbjct: 122 LKGGEPTEPMSLRFGTLEIQPWTHRVFVAGREVHLASREFELLLFLAEHPQIVFSKETLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++ L D     + V  H+++LR+K+  +      + +    GY  +
Sbjct: 182 DRVWDL-DAMGSTSTVSVHMNRLREKIEEDPSNPQWLQTVWGSGYRFN 228


>gi|300697997|ref|YP_003748658.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CFBP2957]
 gi|299074721|emb|CBJ54279.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CFBP2957]
          Length = 232

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A V D        +G  +    +    E LQ +   + + +   L+  G   L
Sbjct: 9   ILVIEDDARVSDFLSRGLRAEGYRV--LLARTGPEGLQLARTGEPALLLLDLMLPGISGL 66

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA  + VP++ ++    +   +     G DD + KP    E+LAR+ A+ RR +
Sbjct: 67  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 126

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N  +   + +  +       G+  PL  +E   LE LM+  G+  ++ +I S +
Sbjct: 127 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  ++ +  N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 187 WGANEDPL-TNIVDVYVRRLRSKIDEGHPVPLLKTVRGLGYRLD 229


>gi|91199976|emb|CAJ73018.1| strongly similar to two component response regulator of OmpR/PhoB
           family [Candidatus Kuenenia stuttgartiensis]
          Length = 223

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       +   +++  N  E   ++ +S   D+  ++  L        
Sbjct: 3   ILVIEDEKKLANYLKKGLEEHHFAVDTCNDGEEGLFMINSHAYDLVVLDIMLPL--MDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  R    ++P + ++   +++  +   D G DD + KP    E+ AR+ A+ RR K
Sbjct: 61  EILRTARKSGLRMPFLLLTAKDAIEDKVRGLDLGADDYLVKPFSFIELTARIRALIRRGK 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V    +     + +          GE   L  +E  +LE+ + N    + +TQI   ++ 
Sbjct: 121 VHYQTKLTVADLSLDLATHRLYRNGETIDLTNKEFALLEFFLRNLNIVLTRTQITEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++     NVV+  +++LR K+        + + + +GY +
Sbjct: 181 -YNFDSFTNVVDVFVNRLRNKIDKNRETKLIHTIKGVGYIM 220


>gi|332754263|gb|EGJ84629.1| transcriptional regulatory protein qseB [Shigella flexneri 2747-71]
          Length = 219

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDSR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|315651808|ref|ZP_07904812.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315485938|gb|EFU76316.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 225

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 108/225 (48%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD A ++         D +S++G+  LE E+  ++       +D+  I   ++   
Sbjct: 6   ILVVDDEARMRK-----LVKDFLSIKGYIVLEAEDGEEALKVFDTNKDIKLILLDVMMPK 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+   IR +S+VP++ ++     +  L+ +  GVD+ + KP   + ++ARV A+ R
Sbjct: 61  MDGFEVLEAIRQYSKVPVMMLTARSEERDELEGYKLGVDEYITKPFSPKILVARVEAVLR 120

Query: 118 RL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R       +   G I V    R   +  +   L  +E  +L Y + N+G  +++ +I S+
Sbjct: 121 RTVGEPEEKLVAGAIEVDKVARSVYIDKKPVDLSFKEYELLTYFIENKGIALSREKILSS 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   +   +++H+ KLR K+  +   D + +   +GY  +
Sbjct: 181 VWN-YDYFGDARTIDTHVKKLRAKMGERG--DYIKTVWGMGYKFE 222


>gi|225575437|ref|ZP_03784047.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037382|gb|EEG47628.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +         +   S++     E      +    D   ++  +       L
Sbjct: 3   ILIAEDEKDLNVLLKKRLENQKYSVDACCDGEEALDYLAVTEYDAVVLDIMMP--KINGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + IR   +  P++ ++   S++  +   D G DD + KP    E+LAR+  + R+  
Sbjct: 61  QVLQKIRKEGTSTPVLLLTAKDSIEDRVTGLDLGADDYLVKPFAFEELLARIRVMLRKSA 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + N  +   + V  +            L  +E  IL Y+  N+G  +++ +I   I
Sbjct: 121 AVETNTNVVKIANLTVDLNTHRVFRDETEIELSNKEFSILRYMCMNKGVVLSRDKIEEHI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D A   NVV+ +I  LR+K+ +      + + R  GY +
Sbjct: 181 WN-YDYAGASNVVDVYIRYLRRKIDDSYEPKLIHTIRGAGYVL 222


>gi|110566635|emb|CAL23368.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus amyloliquefaciens]
          Length = 229

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 95/226 (42%), Gaps = 15/226 (6%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
              +           G  +   +  E    L  +   D+  ++  L       +++ + +
Sbjct: 1   EPSIVTLLQYNLERSGYDVITASDGEEALELAENENPDLIVLDVMLPKV--DGIDVCKQL 58

Query: 68  RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---- 122
           R     VP++ ++        +   + G DD + KP   RE+ ARV AI RR  +S    
Sbjct: 59  RQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRADISSLSQ 118

Query: 123 ------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + +   G +++  +  +   + E   L  +E  +L YL  ++G+ + +  + SA
Sbjct: 119 GREEEKDGQILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTRDLLLSA 178

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++  +D A +  +V+ HIS LR K+ +       + + R LGY ++
Sbjct: 179 VWN-YDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLE 223


>gi|83717734|ref|YP_439572.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|167577990|ref|ZP_02370864.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           TXDOH]
 gi|167616115|ref|ZP_02384750.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           Bt4]
 gi|257142704|ref|ZP_05590966.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|83651559|gb|ABC35623.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
          Length = 229

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G   +             +   D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLP--GHDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P++ ++    +   +   + G DD V KP    E++ARV +I RR + 
Sbjct: 61  TVLERLRRERSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQG 120

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +   + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RESTILKIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV++ I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLEV 221


>gi|23464658|ref|NP_695261.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23325218|gb|AAN23897.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 240

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 21/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
             ++DD   + +    +  ++G  ++   + L   E      + D+  ++  L   G   
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIV-KPDLILLDVMLP--GLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R IRA S VP+I ++        +   ++G DD V KP    E+LAR+ A +R  K
Sbjct: 61  TGVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAK 120

Query: 121 VSN---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
            +                N  E GPI +          G+   L   E  +L  L A  G
Sbjct: 121 PAAEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAG 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           + ++++ +   ++G ++ + +  +V  H+ +LR K+ +      +  + R +GY  
Sbjct: 181 EAISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235


>gi|83950531|ref|ZP_00959264.1| two-component response regulator [Roseovarius nubinhibens ISM]
 gi|83838430|gb|EAP77726.1| two-component response regulator [Roseovarius nubinhibens ISM]
          Length = 224

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             ++G  ++   +        S    DV  I+  L   G   +
Sbjct: 4   ILVVEDDKTTGAYVAGGLREEGHVVDLIENGREALLQASGTEYDVLIIDRMLP--GLDGM 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A +  P++ ++    +   ++  ++G DD + KP    E+ ARVAA+ RR +
Sbjct: 62  ALVKTLRGAKNHTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPR 121

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +    R     G+V  L  RE  +LE L+  +G+   +T +  A++
Sbjct: 122 ATQEETILRAGDLEMDLMHRKVTRAGQVIDLLPREFALLEQLLRRKGRVQTRTMLLEAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +     + NVVE+HIS+LR K+      + +++ R  GY I
Sbjct: 182 DIS-FDPQTNVVETHISRLRAKVDKPFETELIETVRGSGYRI 222


>gi|94314049|ref|YP_587258.1| OmpR/winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93357901|gb|ABF11989.1| two component transcriptional regulator, OmpR/winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 223

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +           G  ++  +     E L +    D   ++  L       L
Sbjct: 3   ILLIEDEATLARQLADTLSQAGYVVDHASDGIDAEHLGTENPYDAVILDLGLP--KLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +  R     VP++ ++   S    ++  D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TVLKRWRQAGNGVPVLILTARDSWVEKVEGIDAGADDYLTKPFRAEELLARIRALIRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     GP+ +        V G    L   E ++L+YLM ++G  V+KT +   IY 
Sbjct: 121 GHTSPVLVCGPVTLAPATGQVSVDGSPIVLTAHEYKVLDYLMHHQGVIVSKTTLTEHIYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LR+KL    G D +++ R LGY +
Sbjct: 181 Q-DHDRDSNTIEVFVGRLRRKL----GVDVIETVRGLGYRL 216


>gi|229095219|ref|ZP_04226211.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229101326|ref|ZP_04232070.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229114167|ref|ZP_04243588.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669187|gb|EEL24608.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228682031|gb|EEL36164.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228688078|gb|EEL41964.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLAMQNIYDAILLDVMMP--GMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  EVIQKIRDERIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V+G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTKQTIRYKGIELFGKDKDVQVEGQDIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|239630540|ref|ZP_04673571.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526823|gb|EEQ65824.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 233

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 100/226 (44%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D     F  + +S+           L  +    ++ I    +       
Sbjct: 5   LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  +QVP+I ++    +   +     G DD + KP    E++ARV    R  + 
Sbjct: 65  SVLRKIRQSNQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 124

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + + A   +   + V +D +  +    + PL +RE  +L  L+A++ +  ++  +  A++
Sbjct: 125 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           G  D   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 185 GT-DFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|182419828|ref|ZP_02951068.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237666356|ref|ZP_04526341.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376376|gb|EDT73958.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657555|gb|EEP55110.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 235

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G +     + +  E +      DV  +   ++      +
Sbjct: 6   ILIVDDEKEIRDLVEIYLKSEGYN--TLQACDGLEAIDIIENTDVDIVILDVMMPNLNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E    IR   ++P+I +S        +   + G DD ++KP +  E++ARV +  RR   
Sbjct: 64  ETCLKIREMKEMPIIMLSAKSEDIDKILGLNMGADDYLSKPFNPLELVARVKSQLRRFYK 123

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    K   N      + +  D  + ++      L   E  IL  L  +RGK  + 
Sbjct: 124 FKNKQDVLYKEDENIIRIEDLTINLDTHEVKLGDTFLKLTPTEFDILSLLSKSRGKVFSI 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             I+ +++   +    +N V  HI K+R+K+  +      + +   +GY I+
Sbjct: 184 ENIYESVWNQ-EFMTSDNTVMVHIRKIREKIESDPRNPRFIKTVWGVGYKIE 234


>gi|11465824|ref|NP_053968.1| Ycf27 [Porphyra purpurea]
 gi|1723330|sp|P51358|YCF27_PORPU RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|1276824|gb|AAC08244.1| hypothetical chloroplast ORF 27 [Porphyra purpurea]
          Length = 243

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +   ++ E    +       +  ++  +        
Sbjct: 8   ILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMP--KLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR   
Sbjct: 66  GVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADK 125

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++     G +++ ++ R      E   L   E  +LE L++  G+  ++  I
Sbjct: 126 ITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
              ++G   +  V+  VV+ HIS+LR KL +     D + + R  GY
Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGY 232


>gi|332184568|gb|AEE26822.1| response regulator in two-component regulatory system with PhoQ
           [Francisella cf. novicida 3523]
          Length = 229

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +       F ++G+        +   +L ++   DV  I+  +       + 
Sbjct: 8   LVADDDKEIAQFIKTKFVENGIETTVAYDGKEALFLINTNNYDVIVIDWMMPY--LDGIS 65

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L +I+R  +   P+I +S   S +  +    SG DD + KP    E++ RV  +Y+R K 
Sbjct: 66  LLKILRKQNVNTPIIILSALDSTENKIQGLKSGSDDYLTKPFSIDELMIRVNILYKRTKQ 125

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +R   G I +     +    G++  L +RE ++L  L+ ++ + V+KT I   +
Sbjct: 126 ITEAQTHRLSCGDIVLDELAHEVRRNGDLILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 186 WD-YDFDPQTNVVEVHISRLRNKLTEGGLIDPIKTIRGFGYVI 227


>gi|260598567|ref|YP_003211138.1| DNA-binding transcriptional regulator BaeR [Cronobacter turicensis
           z3032]
 gi|260217744|emb|CBA32154.1| Transcriptional regulatory protein baeR [Cronobacter turicensis
           z3032]
          Length = 240

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILVVEDEPKLGALLVDYLRAASYAPTLINHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSEVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +        P+ +         + +   L   E R+L+ L +  GK  ++ Q+ + +Y
Sbjct: 131 QRDLQTLDAQSPLVIDEGRFQASWRQKPLDLTPAEFRLLKTLSSEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL       P + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDDDQPFIRAVYGVGYRWEAD 235


>gi|256851855|ref|ZP_05557243.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661884|ref|ZP_05862794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282931967|ref|ZP_06337431.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|297205479|ref|ZP_06922875.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615813|gb|EEU21002.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547353|gb|EEX23333.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303909|gb|EFA96047.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|297150057|gb|EFH30354.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 228

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  ++  E    + ++    +  ++  +       
Sbjct: 3   IIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMPQ--MTG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  S +P+I +S        +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  IDVIKELRKDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQ 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +  E GP+ +  D  +   + G V  L   E  IL  L ++  +  +  +IF
Sbjct: 121 KKVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K++    G + + +   +GY ++
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|227111566|ref|ZP_03825222.1| DNA-binding transcriptional regulator PhoP [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 229

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++  +  +  ++       D++ ++  L    E  +
Sbjct: 3   ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGLPD--EDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R  R H  ++P++ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIRRWRTHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    R+  +      L   E  I+E L+ N+GK V+K  +   +Y 
Sbjct: 121 GLASQVISLPPFEIDLSRREMMIHSSPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK++     D + + R  GY  D
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQAEAPDVITTVRGQGYRFD 221


>gi|332708796|ref|ZP_08428767.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332352338|gb|EGJ31907.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 245

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILVIDDDPAISELVTINLEMAGYDVSQAMDGIKGQALALQLQPDLIMLDLMLPKV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     S +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP+ +  +  +     +   L   E  +L  L+   G+ V+ ++
Sbjct: 122 TDRIPQAAKHTEILNYGPLTLVPERFEAIWFDKTVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILKEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPKYIKTVYGAGYCLE 230


>gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378]
          Length = 225

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 98/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-----SSAREDVSAIEAFLIGK 56
            +++DD       +I       +  EGF+ LE  + L+      + +  ++ I+  +   
Sbjct: 4   ILVVDDDR-----HILKLVGHYLRAEGFHVLEASDGLEGEKMVETEQVHLAVIDVMMPN- 57

Query: 57  GEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
                EL + +R ++  +P+I ++   +L      F+ G DD V KP    E++ R+ A+
Sbjct: 58  -MDGFELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRAL 116

Query: 116 YRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR  + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++ 
Sbjct: 117 LRRSNQASEAKITIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELI 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I+   D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 177 ERIW-QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGIGYKLE 222


>gi|325981914|ref|YP_004294316.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325531433|gb|ADZ26154.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 228

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++         G  ++  +  +   +L S    D + I+  L   G+  L
Sbjct: 3   ILVIEDEFKLQNQIRQQLETAGYMIDTCSDGDEGLFLASEYPLDAAIIDIGLP--GKSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +R    + P++ ++   S Q  +   + G DD + KP    E+LARV A+ RR  
Sbjct: 61  EIIKTLRERGNLLPILILTARSSWQDKVQGLEMGADDYLTKPFQMEELLARVKALLRRAT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + GPI V    +   +      L   E R+LE L+ + G+ ++K  +   +Y 
Sbjct: 121 GIPQTLLKCGPITVDVTAQSVAINEVEIELTSFEYRLLEELVRHHGEVLSKHTLSDYLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS--IDWN 223
             DE  + NV+E  I +LR+KL      +P+++ R  GY   ++ N
Sbjct: 180 PHDEDRDSNVLEVMIGRLRRKLDPDGTLNPIETMRGRGYRFTLECN 225


>gi|238059275|ref|ZP_04603984.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881086|gb|EEP69914.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 230

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 101/223 (45%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD+  + D    +    G  +    +          +   +  ++  L        E
Sbjct: 8   LVVDDQPNIVDMLATVLRFHGFDVVTATTAAEALRRAGESHPRLVVLDVLLPD--GDGFE 65

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R +RA   ++ ++ ++   + +  +     G DD V KP    E++ARV A+ RR+  
Sbjct: 66  VCRTLRAAGHEIGIVFLTARDAPRDRIAGLTYGGDDYVTKPFSVEELVARVRAVLRRIGS 125

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +        + +  +  +    G +  L   E ++L +LM N G+ +++ QI  A+
Sbjct: 126 TPVPATGVLRYADLELDEETCEVRRGGRLLSLSPTEYKLLRHLMLNPGRVLSRAQILDAV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     NVV+++I  LR+KL + LG   ++++R  GY++
Sbjct: 186 W-RYDFDGASNVVDTYIGYLRRKL-DPLGPPLIETRRGFGYAL 226


>gi|228906317|ref|ZP_04070202.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228853340|gb|EEM98112.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 8   LLVVEDNTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMP--GMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 227

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +         +   D+  ++  L       L
Sbjct: 5   ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPN--ISGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  + V P+I ++   S+   +   D G  D + KP    E+LAR+ A  R   
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V     N+  +   + +    R+ +    +  L  RE  +L +LM +  + + + QI + 
Sbjct: 123 VVKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LRKK+   +    V + R +GY +
Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKVDCNVDVPLVHTVRGVGYVL 225


>gi|46908754|ref|YP_015143.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|254854409|ref|ZP_05243757.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|300766082|ref|ZP_07076050.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|46882026|gb|AAT05320.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|258607809|gb|EEW20417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|300513228|gb|EFK40307.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
          Length = 225

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   N     E +  + +  ++ I+  +        
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPN--MDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R +++ +P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR  
Sbjct: 62  ELCKKMRTSYTDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLE 222


>gi|17228665|ref|NP_485213.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130516|dbj|BAB73127.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 234

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 104/230 (45%), Gaps = 12/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQ-SSAREDVSAIEAFLIGKGEKV 60
           +L++D   +              ++      +   +L+ SSA+  V  ++  L   G   
Sbjct: 4   LLVEDEPDLGAAIKRTLNQQKYLVDWVMDGNDAWTYLENSSAQYTVVILDWMLP--GISG 61

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL + +R   + +P++ ++    ++  +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LELCKRLRYQGNPLPILMLTAKDRMEDKVAGLDAGADDYLVKPFGMVELLARLRALQRRS 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +   +   G   +         Q      +  PL  +E ++LEY M +  + V   QI
Sbjct: 122 PHLQPQQLTVGNFTLDYGNSTVVRQNTTGEQQSIPLTNKEFQLLEYFMNHPHQIVTTEQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + I+ +  E+   NVV + I  LR+KL +    +P+++   +GY + ++
Sbjct: 182 RNQIWEVNAES-SSNVVAAQIRLLRRKLTSNDCPNPIETLHGMGYRLKFS 230


>gi|308375329|ref|ZP_07443555.2| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu007]
 gi|308346707|gb|EFP35558.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu007]
          Length = 254

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  +E  +  +           DV  ++  L       LE
Sbjct: 32  LLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDV--DGLE 89

Query: 63  LPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           + R +R  S V  P + ++   S+   +    SG DD + KP    E++AR+  + RR  
Sbjct: 90  ILRRVRE-SDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 148

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++     G + +    R+    G    L   E  +L +LM N  + +++T+I   
Sbjct: 149 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 208

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D A   ++V+ +IS LRKK+ +      + + R +GY +
Sbjct: 209 VWN-YDFAGRTSIVDLYISYLRKKIDSDREP-MIHTVRGIGYML 250


>gi|320009638|gb|ADW04488.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 23  LVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRTARDFRPDAVILDVMLPD--MDGLA 80

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R  S VP++ ++   S++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 81  VLGRLRRELSDVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGT 140

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R+E     G + +  D  +     +   L   E  +L +LM N  + ++K QI   +
Sbjct: 141 ASVRSESTLVVGDLVLDEDSHEVHRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDRV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 201 WN-YDFGGQANVVELYISYLRKKI-DAGRTPMIHTRRGAGYLI 241


>gi|241668018|ref|ZP_04755596.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876552|ref|ZP_05249262.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842573|gb|EET20987.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 229

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +       F ++G+     +  +   +L ++   DV  I+  +       + 
Sbjct: 8   LVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWMMPY--LDGIS 65

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L +I+R  +   P+I +S   S +  +    SG DD + KP    E++ RV  +Y+R K 
Sbjct: 66  LLKILRKQNVTTPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELMVRVNILYKRTKQ 125

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +++   G I +     +     E+  L +RE ++L  L+ ++ + V+KT I   +
Sbjct: 126 IAEAQSHKLTCGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 186 WD-YDFDPQTNVVEVHISRLRNKLTENGLPDPIKTIRGFGYVI 227


>gi|227532872|ref|ZP_03962921.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189477|gb|EEI69544.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 241

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D     F  + +S+           L  +    ++ I    +       
Sbjct: 13  LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  SQVP+I ++    +   +     G DD + KP    E++ARV    R  + 
Sbjct: 73  SVLRKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 132

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + + A   +   + V +D +  +    + PL +RE  +L  L+A++ +  ++  +  A++
Sbjct: 133 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
              D   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 193 ET-DFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 237


>gi|91786148|ref|YP_547100.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695373|gb|ABE42202.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 226

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +    +     DG++L     L            DV  ++  L       L+
Sbjct: 7   LLVEDDPAIARSIVFALERDGINLTHSLLLSDARRQLLVRTPDVVILDIGLPD--GSGLD 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           L + +RA   +P++ +S +      +   + G DD ++KP   RE+LARV ++ RR +  
Sbjct: 65  LCKELRAAGSMPVLILSAHGEEIDRVLGLELGADDYLSKPFSPRELLARVRSLLRRARMP 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      GP  + + G+   + G    L RRE  +L  L+ +RG+  ++ ++  A++G 
Sbjct: 125 PAAPVPANGPFEIDAAGQRMRLHGRPLNLTRREFGLLADLLHHRGRIRSRDELLGAVWGA 184

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            D    +  V++HI  LR KL       D + + R +GY ++
Sbjct: 185 -DSDSTDRTVDTHIKTLRAKLQEAAPERDYIVTHRGMGYCLE 225


>gi|42779797|ref|NP_977044.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735714|gb|AAS39652.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 225

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIKAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYDGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|331269705|ref|YP_004396197.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329126255|gb|AEB76200.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 224

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D   +++       ++   +   ++      +      D+  ++  L   G+   ++ +
Sbjct: 2   EDEEHIRELIKFNLENNNYKIIFASNGIDAVEIAKKELPDLILLDIMLP--GKDGYDVCK 59

Query: 66  IIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            IR ++      +I I+        +   + G DD + KP   RE++ARV A+ RR  + 
Sbjct: 60  EIRNNNDTYNISIIMITAKSEEIDKILGLELGADDYITKPFSIRELIARVKAVLRRTTLL 119

Query: 123 NNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N +   +   I V  D        +   L  +E  ++E L+ N+GK + +  +   ++G
Sbjct: 120 QNNSRMYKFENIMVDFDQHKLFKDNKKVDLTLKEFELIEILVKNKGKIMTREYLLDKVWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   E   ++ HI  LRKK+  +      +++ R +GY  + 
Sbjct: 180 -YEYVGETRTIDVHIRHLRKKIELDDKRPKFIETIRGVGYRFNC 222


>gi|254480429|ref|ZP_05093676.1| phosphate regulon transcriptional regulatory protein PhoB [marine
           gamma proteobacterium HTCC2148]
 gi|214039012|gb|EEB79672.1| phosphate regulon transcriptional regulatory protein PhoB [marine
           gamma proteobacterium HTCC2148]
          Length = 234

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++D                 ++     L    R D+  ++  L   G   LE
Sbjct: 7   LVVEDEKAIRDMLRMALEVAKYRFIEAENIRDAHVLIVDERPDIVLLDWMLP--GGSGLE 64

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++       +P+I ++   +    +   + G DD V KP   RE++AR+ A+ RR 
Sbjct: 65  LLRRLKREDNTREIPVIMLTAKAAEDNVIQGLEVGADDYVTKPFAPRELIARIQALLRRS 124

Query: 120 KVSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              + +   G   + + SD R          L   E  +L++ M++  +  +++Q+   +
Sbjct: 125 AKDSAQGRIGLNGLVLNSDSRRVFAGEIALNLGPTEFNLLQFFMSHPERAYSRSQLLDQV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
           +G  +  +EE  ++ HI +LRK L+       + + + R +GY  
Sbjct: 185 WGA-NVYLEERTIDVHIRRLRKALQTDHADYGELIQTVRGIGYRF 228


>gi|116496108|ref|YP_807842.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116106258|gb|ABJ71400.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 233

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 101/226 (44%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D     F  + +S+           L  +    ++ I    +       
Sbjct: 5   LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  SQVP+I ++    +   +     G DD + KP    E++ARV    R  + 
Sbjct: 65  SVLRKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 124

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + + A   +   + V +D +  +    + PL +RE  +L  L+A++ +  ++  + +A++
Sbjct: 125 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           G  D   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 185 GT-DFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|78183890|ref|YP_376324.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|116071497|ref|ZP_01468765.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|78168184|gb|ABB25281.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
 gi|116065120|gb|EAU70878.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 248

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++           L  +   D+  ++  +        
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPNCMPDLVVLDVMMP--KLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   +R+ ++ R      E   L   E  +LE L++  G+   + +I 
Sbjct: 129 EAIAGIPNSGVIQVSDLRIDTNKRQVFRNDERIRLTGMEFSLLELLVSRSGEPFNRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|22299966|ref|NP_683213.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296151|dbj|BAC09975.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 242

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D         G  +         + L      D+  ++  L        
Sbjct: 5   ILIIDDDPAIADVLAINLQMAGYEVTKSLDGMQGQALAVQLSPDLILLDLMLPQV--DGF 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R       +P++ ++        ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 63  TICQRLRRDPRTQDIPILMLTALSQTHNKVEGFNAGADDYLTKPFELEEMLARVRALLRR 122

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP+ +  +  +    G++  L R E  +L  L+   G+ V+ ++
Sbjct: 123 ADRIPATAGHREILSYGPLTLVPERFEVSWFGKIIKLTRLEFELLHCLLQRHGQTVSPSE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 183 ILKEVWG-YDPDDDIETIRVHVRHLRTKLEPDPRNPRYIKTVYGAGYCLE 231


>gi|295428068|ref|ZP_06820700.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128426|gb|EFG58060.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|323439506|gb|EGA97227.1| respiratory response protein, SrrA [Staphylococcus aureus O11]
 gi|323441526|gb|EGA99177.1| respiratory response protein, SrrA [Staphylococcus aureus O46]
          Length = 222

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 85/216 (39%), Gaps = 14/216 (6%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
               +   +   ++ +    L          ++  L       +++   +R H Q P+I 
Sbjct: 2   YLERESFEIHEASNGQEAYELAMENNYACILLDLMLPE--MDGIQVATKLREHKQTPIIM 59

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---------VSNNRAET 128
           ++        ++ F+SG DD + KP   RE++ RV A+ RR +          + +  E 
Sbjct: 60  LTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTTVEQSEPHARDVIEF 119

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
             + + +D        +   L  +E  +L YL     K   + Q+   ++  ++   +  
Sbjct: 120 KHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQLLKEVW-HYEFYGDLR 178

Query: 189 VVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222
            V++H+ +LR+KL   +      + +   +GY  + 
Sbjct: 179 TVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 214


>gi|262279620|ref|ZP_06057405.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259971|gb|EEY78704.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus
           RUH2202]
          Length = 228

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L        
Sbjct: 8   ILIIEDEIKIATYLVKGLKESGYQAECIHLGLQGLEMLKRDQYDLLILDVMLPD--IDGW 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 66  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 125

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  N      +++          G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 126 LQENELSISDLKMDLVAHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNI 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 186 -NFDTDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 224


>gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 229

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 102/229 (44%), Gaps = 15/229 (6%)

Query: 2   FVLIDD----RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++ DD    R L++D    L  +D   +E  N  +  +     +   +  ++  +    
Sbjct: 6   ILVADDESRMRKLIRD---YLVREDYEVVEAENGEQALDMFYMDSEISLIILDVMMPKV- 61

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
                + + IR  S +P++ ++        L+ F+ G D+ +NKP   + ++ARV A+ R
Sbjct: 62  -DGFAVLKEIRETSSIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNAVLR 120

Query: 118 RL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R     +     E G I++  D       G    L  +E  +L Y + N G  +++ +I 
Sbjct: 121 RSTDDSLGKKVVEAGGIQLDVDAHVATNDGNPVELSVKEFELLYYFINNEGIALSREKIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + ++  +D   +   +++H+ KLR KL +K   + + +   +GY  + +
Sbjct: 181 NHVWD-YDYFGDARTIDTHVKKLRSKLDDKG--NYIKTIWGMGYKFEVD 226


>gi|227877262|ref|ZP_03995335.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|227863118|gb|EEJ70564.1| response regulator [Lactobacillus crispatus JV-V01]
          Length = 234

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 103/232 (44%), Gaps = 19/232 (8%)

Query: 5   IDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKVLE 62
           ++D   V +     F  +G   +   + +E  +  + +A + D+  ++  L  K    ++
Sbjct: 2   VEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKK--DGIQ 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR+ +
Sbjct: 60  VAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVMM 119

Query: 122 SNN-----------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVA 169
                            T  +++  + R+     +    L  +E  +L  +     +  +
Sbjct: 120 EEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQVFS 179

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 180 RDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 229


>gi|300774982|ref|ZP_07084845.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506797|gb|EFK37932.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 224

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 104/224 (46%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +  I    + G ++   +S E    L  +   D+  ++  L   G   +
Sbjct: 3   ILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLP--GLDGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +L +IIR   +  P++ +S   S    +   D G DD ++KP H  E+++R+ A+ RR  
Sbjct: 61  QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K  +     G I + +D        +       E ++  +LM N+ K +++TQI   
Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G+ D     NVV+ +IS +R K+ ++     + + +  GY I
Sbjct: 181 VWGI-DFDNTTNVVDVYISYIRNKI-DETEQKIIHTVKGTGYLI 222


>gi|68536518|ref|YP_251223.1| two-component system response regulator TcsR4 [Corynebacterium
           jeikeium K411]
 gi|68264117|emb|CAI37605.1| two-component system response regulator TcsR4 [Corynebacterium
           jeikeium K411]
          Length = 240

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGPQAVDETRRFSPDVVVLDLGLPE--LDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 133

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V      L   E  +L  L    G+ + +  + + 
Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTGTEFELLVALALRPGQVLTRHDLVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 237


>gi|296112407|ref|YP_003626345.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295920101|gb|ADG60452.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326560837|gb|EGE11203.1| two-component system response regulator [Moraxella catarrhalis
           46P47B1]
 gi|326561915|gb|EGE12250.1| two-component system response regulator [Moraxella catarrhalis
           7169]
 gi|326563058|gb|EGE13332.1| two-component system response regulator [Moraxella catarrhalis
           103P14B1]
 gi|326569554|gb|EGE19608.1| two-component system response regulator [Moraxella catarrhalis BC8]
 gi|326570341|gb|EGE20385.1| two-component system response regulator [Moraxella catarrhalis BC1]
 gi|326572378|gb|EGE22371.1| two-component system response regulator [Moraxella catarrhalis BC7]
 gi|326573651|gb|EGE23610.1| two-component system response regulator [Moraxella catarrhalis
           CO72]
 gi|326577274|gb|EGE27162.1| two-component system response regulator [Moraxella catarrhalis
           101P30B1]
 gi|326578036|gb|EGE27900.1| two-component system response regulator [Moraxella catarrhalis
           O35E]
          Length = 240

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 93/231 (40%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +    + +    +  +   D+S I   L+      +
Sbjct: 5   ILLIEDDPDLAELISDYLSMNYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPDMDGM 64

Query: 62  ELPRIIRAHSQ-----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E+ + +R         VP++ ++        +   + G DD + KP   RE+LAR+ A+ 
Sbjct: 65  EVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVL 124

Query: 117 RRLKVSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR +  N           G + V+ D  +  +  +   L   + ++L Y   + GK + +
Sbjct: 125 RRHETPNQADTNSGSLTFGRLTVYPDSHEVTIDEKTVRLTTHQFQLLHYFATHAGKVLNR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q++ A+         +  ++ HIS+LR  + +       + + R +GY  
Sbjct: 185 EQLWQAMPNDDSSENIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|256848039|ref|ZP_05553483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256715099|gb|EEU30076.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 237

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 105/235 (44%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEK 59
            ++++D   V +     F  +  + E  ++ ++  + + +   R D+  ++  L  K   
Sbjct: 3   ILMVEDNHSVCEMMAMFFKKEKWTAEFVYDGVKAVDKFNEDPQRWDLVLLDLNLPKK--D 60

Query: 60  VLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++   IR  S V P+I ++   S    +   + G D+ V KP     ++AR+ A++RR
Sbjct: 61  GMQVAADIRRISPVVPIIMLTARDSESDQVLGLEMGADEYVTKPFSPLTLIARIKALHRR 120

Query: 119 -----------LKVSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGK 166
                         S+   +T   ++ +  R+  +  +    L  +E  +L+ L +   +
Sbjct: 121 IAMGNVGGKEPASESDFDIQTPHFKLNTKTREAFLNDQPIKDLTPKEFDLLKTLASKPKQ 180

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ Q+   ++  ++   +E  V++HI KLR+K+   +G   + +   +GY  D
Sbjct: 181 VFSREQLLQLVWN-YEYYGDERTVDAHIKKLRQKIEQ-VGPKVIQTVWGVGYKFD 233


>gi|261342626|ref|ZP_05970484.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315274|gb|EFC54212.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
          Length = 220

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      ++G +L+   +    + L  S    +  ++  L  K    L
Sbjct: 3   LLIVEDDLLLQEGLALALANEGYALDCAATAAEADALIQSGEYSLVILDLGLPDKDGATL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R   + P++ ++   +++  ++  DSG DD + KP    E+ ARV A+ RR + 
Sbjct: 63  -LSQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N    G I +    +    Q +   +  +E  +L  L+   G+ V +  +   IY  
Sbjct: 122 HSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYSW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 182 QDDPG-SNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLE 217


>gi|94266053|ref|ZP_01289772.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453375|gb|EAT03803.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 240

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G  +   +  E    L      D+  ++  L   G    
Sbjct: 13  ILVVEDDENIQQLVGYNLVKAGFQVVYADHGEQALALVFRENPDLVLLDLMLP--GLDGG 70

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + +R   +   +P++ ++            D G DD + KP   + ++ARV A  RR
Sbjct: 71  EVCKALRRDPRSRHLPIVMLTARGDEDEISAGLDLGADDYITKPFSPKILVARVKAALRR 130

Query: 119 LKVSNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +             R E   + +        V GE   L   E  ILE L    G   +
Sbjct: 131 GREVAGEEGGAGGVLRLEAAGLVIDPGRYQVLVAGEPVFLTLSEFGILELLARRPGWVFS 190

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + QI  A+ G +D A+    V+  +  LRKKL    G   +++ R +GY +
Sbjct: 191 RQQIIDAVRG-YDYAITPRAVDVQVFGLRKKLGAAGG--CIETVRGVGYRL 238


>gi|50121372|ref|YP_050539.1| DNA-binding transcriptional regulator PhoP [Pectobacterium
           atrosepticum SCRI1043]
 gi|49611898|emb|CAG75347.1| two-component response regulator of virulence determinants
           [Pectobacterium atrosepticum SCRI1043]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++  +  +  ++       D++ ++  L    E  +
Sbjct: 3   ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGLPD--EDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R  RAH  ++P++ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIRRWRAHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    R+  +      L   E  I+E L+ N+GK V+K  +   +Y 
Sbjct: 121 GLASQIISLPPFEIDLSRRELMIHSAPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK++     D + + R  GY  D
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQADAQDVITTVRGQGYRFD 221


>gi|119715849|ref|YP_922814.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536510|gb|ABL81127.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 225

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G  ++  +              DV  ++  L        +
Sbjct: 4   LMVEDEVRLAETVSRGLRAEGFVVDTIHDGAEGLAEAQLRDYDVIVLDIMLPS--MNGYD 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +R     VP++ ++         D  D G DD + KP     ++AR+ A+ RR   
Sbjct: 62  VCRELRKAGVWVPILMLTAKDGEYDEADALDLGADDYLTKPFSFVVLVARLRALVRRGAP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G + +    R     G    L  RE  +L +LM + G+ ++KT I  +++ L
Sbjct: 122 KRPSVLTVGDLTLDPATRMVGRGGTEIALTPREFALLHFLMRHPGEVLSKTAIVQSVWDL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   +ENVVE ++  LR+K+    G   + + R  GY +
Sbjct: 182 -NYDGDENVVEVYVGYLRRKIDQPFGTTTIQTMRGAGYRL 220


>gi|16332195|ref|NP_442923.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1653824|dbj|BAA18735.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|122893699|gb|ABM67667.1| CcaR [Synechocystis sp. PCC 6803]
          Length = 234

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       D   +++            S    D+  ++  L       +
Sbjct: 3   ILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPE--LDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L +  R+HS  +P++ ++   ++   +   D+G DD V KP+   E+ ARV A+ RR  
Sbjct: 61  TLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E GPIR+     +     EV  L R+E  ILE L+ N  + ++++ I  +I+ 
Sbjct: 121 ATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           L +   EE+ V+ H+  LR+KL++  L  D +++   +GY +
Sbjct: 181 L-ESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRL 221


>gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +++    +  D+G S+    ++   + L+    E +      ++       
Sbjct: 4   ILVIDDDDYIRELICTVLKDEGFSV--AEAVNGRDALEKLGEEKIDLCVLDIMMPQMDGY 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  +  R +   +P++ ++    L   +  F+ G DD + KP    E+L R+ A+ RR K
Sbjct: 62  EFCKQARRYYEDMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALLRRYK 121

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V+ +R    G + +           E F +P +E  +L  L +  GK +++ ++   ++G
Sbjct: 122 VAASRIINIGNLVMDKSSYTVISNNEQFDIPMKEFELLFMLGSYPGKTLSRDRLIEEVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L D    E  ++ HI++LR++ ++ +    + + R LGY ++
Sbjct: 182 L-DFEGNERTLDVHINRLRERFQSDIYKFKITTIRGLGYRVE 222


>gi|306832962|ref|ZP_07466094.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304424861|gb|EFM27995.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 232

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 8/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    N       L    +   S +   ++       +
Sbjct: 5   LIIDDDKELCALMKKCIEQEEMSALVANGGTEGLRLIDENKNLFSLVILDVMMPDIDGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  S +P++ ++        +     G DD + KP   +E++ARV ++ RR    
Sbjct: 65  VLEKIRETSNIPVLMLTAKSGEDDKVFGLRLGADDYLTKPFSIKELMARVNSLIRRYTTL 124

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N             +++    R   V      L  +E  +L +L +N+G+   K QI++ 
Sbjct: 125 NPTFAEEDCITLKGMKIDKVNRTVLVNNISVELTSKEFDLLTFLASNKGRIFTKKQIYTQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++   D A ++N + S ISKLRKK+         + + R +GY  +
Sbjct: 185 VW-KDDYAFDDNNIMSFISKLRKKIEADPEHPFYILTIRGVGYRFN 229


>gi|297569540|ref|YP_003690884.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925455|gb|ADH86265.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 237

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G  +   ++ E    L      D+  ++  L   G    
Sbjct: 12  ILIVEDDENIQQLVGYNLVKAGFQVIYADNGEQALALVQREAPDLVVLDVMLP--GMDGY 69

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + +R   +   +P+I ++            D G DD + KP   + +++RV +  RR
Sbjct: 70  QICKTLRRDPRHRWLPIIMLTARSDDDDVTAGLDQGADDYITKPFSPKILVSRVKSALRR 129

Query: 119 LKVSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +  +        R     I +        VQ +   L   E  ILE L    G   ++ 
Sbjct: 130 SRELDQDEDGGVLRLTEAGIVIDPRRHQVLVQDKPVSLTISEFSILELLARRPGWVFSRQ 189

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI   + G +D A+    V+  +  LRKKL        +++ R +GY +
Sbjct: 190 QIIDTVRG-YDYAITPRAVDVQVFGLRKKLGQAGA--CIETVRGVGYRL 235


>gi|229013874|ref|ZP_04171002.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
 gi|228747543|gb|EEL97418.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 92/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +            ++  +S E    LQ + +ED   I   ++       
Sbjct: 4   ILLVEDEISIAELQRDYLEISDFQVDVEHSGET--GLQRALQEDYDLIILDIMLPKMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +E  +L + + +  + + K Q+F
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTMKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL + A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 182 ERIWGL-ESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|225388657|ref|ZP_03758381.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
           DSM 15981]
 gi|225045255|gb|EEG55501.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
           DSM 15981]
          Length = 235

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++ + +  F S E       S   D++ ++  L       L
Sbjct: 5   ILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPD--ISGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR+     P+I +S        +     G DD + KP    E++ARV A  RR K
Sbjct: 63  SICQSIRSKEYTYPVIMLSAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYK 122

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     ++   +   + +     +  + GE   L   E  IL  L+  R   V+  
Sbjct: 123 KYNVGAAVPAADEVFQYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++F  I+         N +  HI  LR+K+++       + +   +GY I
Sbjct: 183 ELFHEIWQEEYYNKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKI 232


>gi|302188629|ref|ZP_07265302.1| two component transcriptional regulator [Pseudomonas syringae pv.
           syringae 642]
          Length = 220

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +G       +G +++             S   D++ ++  L        
Sbjct: 3   LLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPT--LSGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R + S +P++ ++   + +  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLRRLRHSGSTLPVMILTARDATEDRIIGLDIGADDYLVKPFDVSELKARLRALLRRSA 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   IR+    +          L  +E ++L  L++  G+ + + ++   +YG
Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++E  E N +E HI  LRKK  + L    + + R +GY ++
Sbjct: 181 -WNEEAESNTLEVHIHHLRKKFSSTL----IRTIRGVGYLVE 217


>gi|260654507|ref|ZP_05859997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Jonquetella anthropi E3_33 E1]
 gi|260630784|gb|EEX48978.1| phosphate regulon transcriptional regulatory protein PhoB
           [Jonquetella anthropi E3_33 E1]
          Length = 237

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A + D  +      G         +    L  + R D+  ++  L   G +  
Sbjct: 6   ILVIEDEAPIADILVQALKRSGYEASWAGDGDTGLELIMTGRPDLVLLDLMLP--GLEGW 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R        P+I ++        +    +G DD + KP    E++ARV A  RR
Sbjct: 64  EVCRRMRQAPETRDTPVIMVTARRDESEAVAGLAAGADDYIRKPFSLAELMARVEAQLRR 123

Query: 119 LKVSNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             ++   AE      I +  +     + G    L   E +ILE L +  G+ V++ +I +
Sbjct: 124 RSMARQDAEETKDERIVLDQETGVVRIDGWEAELSPTEFQILELLASRPGRPVSRDRITA 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++GL  +  E   +++H+S+LRKKL        + + R  GY ++W
Sbjct: 184 VVWGL--DPAESRALDTHLSRLRKKLSGCPDGPEITTLRSRGYRLEW 228


>gi|221211979|ref|ZP_03584957.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD1]
 gi|221168064|gb|EEE00533.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD1]
          Length = 225

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G S++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGLEESGFSVDLATDGAQGLLLAQEESYDVIVLDVMLPV--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +R     P++ ++    +Q  +   + G DD + KP    E+LARV  + RR   
Sbjct: 61  GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L    G+ +++TQI S ++ +
Sbjct: 121 RETERITVGDLDIDVVRRRVKRGAVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKVDDDFPIKLIHTVRGVGYVLE 220


>gi|188588155|ref|YP_001921219.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|188498436|gb|ACD51572.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
          Length = 235

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + DG      + G ++  F +    E L     E +      ++      ++
Sbjct: 7   LIVEDEKEICDGIAIYLNNQGYNV--FKAHNGIEGLDIINNETIHLAIVDIMMPKMDGIQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   +R+    P+I +S        +   + G DD + KP +  E+LARV +  RR    
Sbjct: 65  MTMKLRSKFDFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQLRRYSKY 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +  NN      + + ++ ++  V  E   L   E +IL  L+ N G+  +  +
Sbjct: 125 LNVINNLEEKNNNFIIDGLELNAETKEVFVDEESVKLTPIEFKILHLLIKNPGRVFSADE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 185 IYEKVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 232


>gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20]
 gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G  +   +  +    L      D   ++  L       +
Sbjct: 4   ILVVDDEIAISTLLKYNLEENGYDVTVASDGQTAYDLAKQESFDAILLDLMLPV--IDGM 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R      P+I ++        +   + G DD + KP   RE++ARV A+ RR +
Sbjct: 62  TLLKNLRQDKVSTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVVARVKAVLRRSQ 121

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V       ++  +   + +  + +      ++  L  RE  +L Y     G+ + +  I 
Sbjct: 122 VDHQVVAESDVIKVQNVVIDDNKKVVTRDNQILTLTPREYELLLYFAHRIGRVIDRETIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +A++G ++   E  +V+ HIS LR+K+  N      + + R  GY++
Sbjct: 182 TAVWG-YEFTGESRMVDMHISNLREKIETNPKSPQLLKTVRGFGYTL 227


>gi|166030784|ref|ZP_02233613.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC
           27755]
 gi|166029366|gb|EDR48123.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC
           27755]
          Length = 257

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 95/252 (37%), Gaps = 36/252 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L G +G  +    +      L      D+  ++  +   G    
Sbjct: 6   ILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMP--GPNGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R IR  S  P++ +S           F SG DD + KP  + E+++R  A+ RR +V
Sbjct: 64  QTCRKIRELSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRRYQV 123

Query: 122 SNNRAETG---------------------------------PIRVFSDGRDPEVQGEVFP 148
              + E+G                                  + +    R+    G++  
Sbjct: 124 YKGKNESGNQSINSASVNPTAEPIASTSNASDSRHRILLFHDLEINQTVREVHKNGQLLD 183

Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-F 207
           L   E  +LE L+ANR +  +  ++F +++         N V  HI  LR K+ +  G  
Sbjct: 184 LTETEYSMLELLVANRHQTFSAQRLFESVWQEPYYYGANNTVTVHIRNLRSKVEDHPGNP 243

Query: 208 DPVDSKRFLGYS 219
           + + +    GY 
Sbjct: 244 ELIKTVWGKGYR 255


>gi|152988150|ref|YP_001350819.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7]
 gi|150963308|gb|ABR85333.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7]
          Length = 221

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  L+ DG  A    +G ++E        E    +   D+  ++  L  +    L
Sbjct: 3   ILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRR--SGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R   Q  P++ ++    +   +   DSG DD + KP    E+ ARV A+ RR  
Sbjct: 61  DILRNLRHQGQLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G +R+        + G+   L  RE  +L  L+ N GK +++ Q+  ++YG
Sbjct: 121 GRALPQLVHGALRLDPATHQVTLAGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   VE N +E H+  LR+KL    G   + + R +GY ID
Sbjct: 181 -WSGDVESNAIEVHVHHLRRKL----GNQLIRTVRGIGYGID 217


>gi|332971320|gb|EGK10283.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   +     G       +      +      D+  ++  L        
Sbjct: 4   ILIVDDEKKIREVLSSYLSHAGYRTLEAGTGRKALDIHREVAVDLIILDLMLPD--LSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  S VP++ ++     +  L+    G DD V KP   RE++ARV AI RR   
Sbjct: 62  EVCREIRRQSAVPILMLTAKVEERHRLEGLAIGADDYVIKPFSPREVVARVQAILRRSAD 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + G + V +  +     G+   L   E R+++ L  N G+  ++ ++   +
Sbjct: 122 DLLAERVSFQHGDLIVDTRTKTVCKAGQPVHLTPIEYRLIQILARNPGRPFSREELVEKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G FD + +E  ++ H+  LR K+  +        +    GY  +
Sbjct: 182 FG-FDYSGDERTIDQHVKNLRNKVEPDPKNPTYFKTVFGFGYRFE 225


>gi|16126989|ref|NP_421553.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221235781|ref|YP_002518218.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13424351|gb|AAK24721.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220964954|gb|ACL96310.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 223

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D             + G  +      E           DV  ++  +    G  V
Sbjct: 3   ILIIEDDLEAAGAMAHGLKEAGYDVAHAPDGEAGLAEAQKGGWDVLVVDRMMPKMDGVTV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R  R   Q P++ +S    +   +    +G DD + KP    E++ARV A+ RR +
Sbjct: 63  VETLR--REGDQTPVLFLSALGEVNDRVVGLKAGADDYLVKPYAFPELMARVEALSRRRE 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +    R    QG+   L  RE ++LE++M + G+ V +T +   ++
Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +    + NV++ HIS+LR K+        + + R  GY +D
Sbjct: 181 -EYHFDPQTNVIDVHISRLRSKIDKGFDRAMLQTVRGAGYRLD 222


>gi|23014270|ref|ZP_00054096.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +      G S                   D+  ++  L   G    
Sbjct: 7   ILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIMLP--GMDGT 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S +P+I ++        L   + G DD + KP   RE++AR+ +++RR++ 
Sbjct: 65  AVCRELRRFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRRMEW 124

Query: 122 SNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N    +GP  + +   G    + G   PL   E R++  L ++ G+   + QI    Y 
Sbjct: 125 GNPVPASGPAQLEIDDAGLRICINGNRLPLTPTEFRLMRLLASSPGRIYTRAQILDLAY- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             D+ V + +++SH+  +RKK+ +     D + S   +GY  +
Sbjct: 184 HGDQDVSDRIIDSHVKNIRKKISSVWPDVDVIHSVYGIGYRYE 226


>gi|313898964|ref|ZP_07832491.1| response regulator MprA [Clostridium sp. HGF2]
 gi|312956163|gb|EFR37804.1| response regulator MprA [Clostridium sp. HGF2]
          Length = 242

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +  +D   + +        +G +++  F+  E  E+L + A  D   ++  +       
Sbjct: 21  LLFAEDERDLNEIVCQKLRKEGYTVDACFDGAEALEFL-AVADYDAVILDIMMPV--MDG 77

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             + + +RA  +  P++ +S   S++  +   DSG +D + KP    E++AR+  + R  
Sbjct: 78  YAVLKQLRAEGRMTPVLFLSARDSIEDRVLGLDSGANDYLIKPFSFAELMARIRTMIRLS 137

Query: 120 KVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K S  +  + G + + +         ++  L  +E  +LEY++ N+   +++  I   I+
Sbjct: 138 KGSQTSLLQVGDLTLDTATHTVHRANKLILLSAKEYALLEYMLLNKNIVLSRETIEEHIW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD A   N+V+ +IS LRKK+        + + R  GY I
Sbjct: 198 D-FDYAGGTNLVDVYISYLRKKIDGASTCKLIHTVRGSGYVI 238


>gi|300694173|ref|YP_003750146.1| transcriptional regulatory protein, probable baer protein, response
           regulator for mdtABCd and acrd [Ralstonia solanacearum
           PSI07]
 gi|299076210|emb|CBJ35523.1| Transcriptional regulatory protein, probable baeR protein, response
           regulator for mdtABCD and acrD [Ralstonia solanacearum
           PSI07]
          Length = 222

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +               E  +              ++  ++  L   G+  
Sbjct: 4   MILIVEDEPKLAALMGDYLRAAHYDTEWVDDGTRAVQRVRETSPELVLLDLMLP--GKDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +RA S +P++ ++        L   + G DD + KP   RE++AR+  I RR++
Sbjct: 62  LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRRVQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + ++  +++ +      ++G+   L   E R+L  L    G+ +++  +   IY  
Sbjct: 122 RGGAQPDS-LLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               V +  V++H+  LR+K+     G + + S   +GY +D
Sbjct: 181 H-RIVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 221


>gi|239942785|ref|ZP_04694722.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989244|ref|ZP_04709908.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 248

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 24  LVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPD--MDGLA 81

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R ++ VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 82  VLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGS 141

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +       +    G + +  D  +    GE   +   E  +L +LM N  + ++K QI  
Sbjct: 142 AVAAGRGESTLTVGDLVLDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQILD 201

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 202 RVWN-YDFGGQANVVELYISYLRKKI-DAGRTPMIHTRRGAGYLI 244


>gi|291287141|ref|YP_003503957.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884301|gb|ADD68001.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 223

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 7/223 (3%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KG 57
           M   ++I+D   ++D      G +      F++         +   D+  ++  L G KG
Sbjct: 1   MIKVLVIEDHEEIRDLISYNLGKESFETICFDNANEGLIHLENNDVDIILLDLMLPGLKG 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            + L++ R  + +S VP+I IS   + Q  ++  + G DD + KP   + ++A++ AI R
Sbjct: 61  MQFLQIVRNNKKYSGVPIIIISAKNTEQDIINGLEMGADDYLTKPFSIKILIAKINAILR 120

Query: 118 RL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R   + +       I + ++     V GE   L  +E  +L+ L+ +  +   + QI +A
Sbjct: 121 RNPAIKSKVISINGINIDTNNYVVTVDGEEISLTNKEYELLQLLLKHPKRVFTRNQILNA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G ++  V    V++H+S LRKKL  +  F  + S   +GY 
Sbjct: 181 VWG-YESDVYTRTVDTHVSSLRKKLGTRGSF--IKSVPKIGYR 220


>gi|205354093|ref|YP_002227894.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273874|emb|CAR38875.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326629210|gb|EGE35553.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 219

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R  R    Q P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +        + GE   L  +E  +LE L+ N+G+ + +  I   +Y 
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 181 -WDDDVSSNAVEVHVHHLRRKL----GSEFIRTMHGIGYTL 216


>gi|209548520|ref|YP_002280437.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534276|gb|ACI54211.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 223

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +         + G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   ILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPDLDGVTV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  +   A   VP++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 63  LE--KWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|115523941|ref|YP_780852.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517888|gb|ABJ05872.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 231

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +     +   D G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   LLVVEDDPDLNRQLASALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIAV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R  R    +P++ ++        +  FD+G DD V+KP H  E+LAR+ A+ RR  
Sbjct: 63  LEAWR--RNARAMPVLILTARDRWSDKVQGFDAGADDYVSKPFHLEEVLARIRALLRRTA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    GP+ + +      V G    +   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHAQSELSCGPVVLDTRTGRVSVNGAPVKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + ++R+KL      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRRKLD----VDIIQTVRGLGYLL 216


>gi|53716914|ref|YP_105697.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
           23344]
 gi|53722061|ref|YP_111046.1| transcriptional activator protein [Burkholderia pseudomallei
           K96243]
 gi|76818559|ref|YP_335189.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|121596825|ref|YP_989627.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
 gi|124381657|ref|YP_001024226.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
 gi|126444012|ref|YP_001062520.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126445741|ref|YP_001078366.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
 gi|126456086|ref|YP_001075473.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
 gi|134283471|ref|ZP_01770171.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
 gi|167003030|ref|ZP_02268820.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
 gi|167723508|ref|ZP_02406744.1| transcriptional activator IrlR [Burkholderia pseudomallei DM98]
 gi|167742474|ref|ZP_02415248.1| transcriptional activator IrlR [Burkholderia pseudomallei 14]
 gi|167819642|ref|ZP_02451322.1| transcriptional activator IrlR [Burkholderia pseudomallei 91]
 gi|167828025|ref|ZP_02459496.1| transcriptional activator IrlR [Burkholderia pseudomallei 9]
 gi|167849481|ref|ZP_02474989.1| transcriptional activator IrlR [Burkholderia pseudomallei B7210]
 gi|167898085|ref|ZP_02485487.1| transcriptional activator IrlR [Burkholderia pseudomallei 7894]
 gi|167906419|ref|ZP_02493624.1| transcriptional activator IrlR [Burkholderia pseudomallei NCTC
           13177]
 gi|167914754|ref|ZP_02501845.1| transcriptional activator IrlR [Burkholderia pseudomallei 112]
 gi|167922645|ref|ZP_02509736.1| transcriptional activator IrlR [Burkholderia pseudomallei BCC215]
 gi|217419095|ref|ZP_03450602.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
 gi|226199348|ref|ZP_03794907.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
           9]
 gi|237509707|ref|ZP_04522422.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|238562934|ref|ZP_00439668.2| transcriptional activator protein IrlR [Burkholderia mallei GB8
           horse 4]
 gi|242312627|ref|ZP_04811644.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
 gi|254174272|ref|ZP_04880934.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
 gi|254183534|ref|ZP_04890126.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
 gi|254190152|ref|ZP_04896661.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193175|ref|ZP_04899610.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
 gi|254200501|ref|ZP_04906866.1| transcriptional activator IrlR [Burkholderia mallei FMH]
 gi|254204526|ref|ZP_04910879.1| transcriptional activator IrlR [Burkholderia mallei JHU]
 gi|254263255|ref|ZP_04954120.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
 gi|254300419|ref|ZP_04967865.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
 gi|254356844|ref|ZP_04973119.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
 gi|55977758|sp|O31395|IRLR_BURPS RecName: Full=Transcriptional activator protein irlR
 gi|52212475|emb|CAH38501.1| transcriptional activator protein [Burkholderia pseudomallei
           K96243]
 gi|52422884|gb|AAU46454.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
           23344]
 gi|76583032|gb|ABA52506.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|121224623|gb|ABM48154.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
 gi|124289677|gb|ABM98946.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
 gi|126223503|gb|ABN87008.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126229854|gb|ABN93267.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
 gi|126238595|gb|ABO01707.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
 gi|134245220|gb|EBA45314.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
 gi|147748113|gb|EDK55188.1| transcriptional activator IrlR [Burkholderia mallei FMH]
 gi|147754112|gb|EDK61176.1| transcriptional activator IrlR [Burkholderia mallei JHU]
 gi|148025871|gb|EDK83994.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
 gi|157809906|gb|EDO87076.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
 gi|157937829|gb|EDO93499.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695318|gb|EDP85288.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
 gi|169649929|gb|EDS82622.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
 gi|184214067|gb|EDU11110.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
 gi|217398399|gb|EEC38414.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
 gi|225928563|gb|EEH24591.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
           9]
 gi|235001912|gb|EEP51336.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|238521676|gb|EEP85126.1| transcriptional activator protein IrlR [Burkholderia mallei GB8
           horse 4]
 gi|242135866|gb|EES22269.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
 gi|243061379|gb|EES43565.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
 gi|254214257|gb|EET03642.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 22/231 (9%)

Query: 2   FVLIDDRA---------LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++++D           L + G+IA + +DGV+  G +  E EE+       D+  ++  
Sbjct: 3   ILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVT--GLHQAETEEY-------DLIILDVM 53

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           L   G     +   +R     P++ ++    +   +   + G DD V KP    E++ARV
Sbjct: 54  LP--GHDGWTVLERLRRAHSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARV 111

Query: 113 AAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +I RR +   +       + +    R    QG+V  L  +E  +L  LM   G+ + + 
Sbjct: 112 RSILRRGQARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRA 171

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            I S ++ + +   + NVV++ I +LR K+ +      + + R +GY ++ 
Sbjct: 172 TIASQVWDM-NFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLEV 221


>gi|315094756|gb|EFT66732.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
          Length = 243

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +   NS         + R DV  ++  L       LE
Sbjct: 21  LVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLPDF--DGLE 78

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR     VP + ++   ++   +    +G DD + KP    E++AR+  + RR   
Sbjct: 79  VMRQIRMNQPTVPAVFLTAKDAISGRIAGLTAGGDDYITKPFSLEEVIARLRTLLRRAGA 138

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S++    G + +  D R+    GE   L   E  +L Y M N  + ++K QI   +
Sbjct: 139 TEPKSDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDRV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ ++     + + R  GY +
Sbjct: 199 WN-YDFRGQANVVELYISYLRKKI-DRGHTPMIHTMRGAGYVL 239


>gi|256422749|ref|YP_003123402.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256037657|gb|ACU61201.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 266

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 104/225 (46%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   V +       ++G  ++        + L +S   D+  ++  L    G +V
Sbjct: 42  ILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYEV 101

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R  R ++ +P+I ++    +   +  F+ G DD + KP   RE++AR+    +R  
Sbjct: 102 CEVIR--RKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAG 159

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    +   G + +  + ++    G+   L  +E ++LE+L  ++GK ++K  I  
Sbjct: 160 SEVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAE 219

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ + D     NV+E +++ LRKK+        + +K  +GY +
Sbjct: 220 KVWDI-DFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYL 263


>gi|229030926|ref|ZP_04186945.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228730420|gb|EEL81381.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 225

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFV--DGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LNADMITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTADFQITTVRGLGYKLE 223


>gi|227524819|ref|ZP_03954868.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088034|gb|EEI23346.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 242

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 95/231 (41%), Gaps = 18/231 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +              ++   +      +  +   D+  ++  L        E
Sbjct: 5   LVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPE--MSGEE 62

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR   +  P+I ++   +    +   + G DD V KP   RE++AR+ A+ RR + 
Sbjct: 63  VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122

Query: 122 SN-------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           S              +   TGP  +        V  +   L  +E  +++YL+ +  + +
Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           ++ Q+   ++G FD + +  +V+  I+ LR+K+ +       + + R  GY
Sbjct: 183 SRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGY 232


>gi|191639614|ref|YP_001988780.1| Response regulator [Lactobacillus casei BL23]
 gi|190713916|emb|CAQ67922.1| Response regulator [Lactobacillus casei BL23]
 gi|327383726|gb|AEA55202.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei LC2W]
 gi|327386919|gb|AEA58393.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei BD-II]
          Length = 233

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 101/226 (44%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D     F  + +S+           L  +    ++ I    +       
Sbjct: 5   LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  SQVP+I ++    +   +     G DD + KP    E++ARV    R  + 
Sbjct: 65  SVLRKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 124

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + + A   +   + V +D +  +    + PL +RE  +L  L+A++ +  ++  + +A++
Sbjct: 125 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAAVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           G  D   + N+++ +I  LR K+ +  G    + + R +GY +  N
Sbjct: 185 GT-DFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|218779424|ref|YP_002430742.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760808|gb|ACL03274.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 236

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 25/235 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGK 56
            +++DD A +++  +  F    +  EGF ++  ++ LQ+      A  D+  ++  +   
Sbjct: 7   IMVVDDDAHIRE--VVGFA---LKKEGFQTIPAKDGLQAVEMFAEATPDLVILDILMPE- 60

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                E+ + IRAHS VP+I +S        +   + G DD V KP   RE++ARV A  
Sbjct: 61  -MDGTEVCKKIRAHSDVPIIFLSSKDDEIDRILGLELGGDDYVTKPFSPRELIARVKARL 119

Query: 117 RRL-----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           RR            +      E G +R+  D R          L  RE RIL+ LM    
Sbjct: 120 RRRLTEAKPAVSLQEKLGAILEKGRLRLDVDARIVSWDSVRVELTHREFRILQTLMGYPE 179

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           K   + ++    YG  D  V +  ++SHI  +RKKL   +G + + +   +GY +
Sbjct: 180 KIFTREELIDGAYGR-DHFVSDRTIDSHIKSVRKKL-AAVGGEAIRTAHGVGYQL 232


>gi|117621514|ref|YP_855892.1| transcriptional regulatory protein PhoP [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562921|gb|ABK39869.1| transcriptional regulatory protein PhoP [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 235

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+      L  +    +   +S +      +    DV+ I+  L       L
Sbjct: 14  ILLVEDDKLLNHHLSTLLTEAQNQVHSTDSAQVALHYAADYPIDVAIIDLGLPD--MDGL 71

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +L R +R      P+I ++   + Q  ++  ++G DD + KP    E+LAR+ A+ RR  
Sbjct: 72  QLIRQLREQQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSA 131

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + R + G   +    ++  + G    L   E  ILEYLM N  + V+K Q+   +YG
Sbjct: 132 GFISPRVKAGDYELDLSRKELTIAGTPVVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  +S+LRKKL  +    P+ + R  GY  +
Sbjct: 192 --DGEGDPNTIEVMVSRLRKKLDPEGTIQPISTIRRQGYIFN 231


>gi|104781839|ref|YP_608337.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95110826|emb|CAK15541.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 220

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +L+                 D+  ++  L       +
Sbjct: 3   LLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHEAFDLVILDLGLPR--MDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +RA    +P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELLRRVRAGGDSLPVLILTARDALDDRISGLDAGADDYLVKPFDLNELKARLRALLRRSA 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   + +    +     G    L  +E R+L  L+A  GK   + ++   +YG
Sbjct: 121 GRAKVLIEHAGVSLDPATQQVHYNGMEIVLTPKEYRLLHELLAQPGKVFTRERLTQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +DE  E N +E +I  LRKKL N L    + + R +GY ++
Sbjct: 181 -WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217


>gi|83747585|ref|ZP_00944622.1| probable two-component response regulator [Ralstonia solanacearum
           UW551]
 gi|207725031|ref|YP_002255428.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207738626|ref|YP_002257019.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83725765|gb|EAP72906.1| probable two-component response regulator [Ralstonia solanacearum
           UW551]
 gi|206590261|emb|CAQ37222.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206591994|emb|CAQ58900.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 226

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A V D        +G  +    +    E LQ +   + + +   L+  G   L
Sbjct: 3   ILVIEDDARVSDFLSRGLRAEGYRV--LLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA  + VP++ ++    +   +     G DD + KP    E+LAR+ A+ RR +
Sbjct: 61  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N  +   + +  +       G+  PL  +E   LE LM+  G+  ++ +I S +
Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  ++ +  N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 181 WGANEDPL-TNIVDVYVRRLRSKIDEGHPVPLLKTVRGLGYRLD 223


>gi|307267065|ref|ZP_07548578.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391596|ref|ZP_08213126.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306917896|gb|EFN48157.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992378|gb|EGD50840.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 234

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G  +    + +         + D+  ++  L       LE
Sbjct: 6   LVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDV--DGLE 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +I++ +     +P+I ++        +   + G DD + KP   RE+LAR+ A+ RR 
Sbjct: 64  ICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRT 123

Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +      E     G I + +       +G+V  L  +E  +L+ L  N GK + +  +  
Sbjct: 124 QQPEEEKEGIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++G ++ A E   V+ HI  LRKK+ +       +++ R +GY +
Sbjct: 184 KVWG-YEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKL 228


>gi|225174414|ref|ZP_03728413.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170199|gb|EEG78994.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 236

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         D   +   ++ +  E LQ    E    +   L+       
Sbjct: 7   ILVVDDEPKIRRIVEQSLRKDAYRV--VHACDGLEALQKLETEHPDLLVLDLMMPEMDGF 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R      P+I ++    L+     F+ GVDD V KP    E+  RV A+ RR+ 
Sbjct: 65  EVCKAMRNRGDNTPVIILTAKDELEDKAFGFNLGVDDYVTKPFSPSELALRVKAVLRRVS 124

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     + G + + S  R+  + GE   L  +E  +L  L  N G   ++ Q+
Sbjct: 125 GEELAPRLKEGTFDDGRLYINSKTREVRLNGEDVYLTAKEFDLLWVLANNPGVVYSRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++G  +   +   V   I ++R+K+  +      + +   +GY  +
Sbjct: 185 LDMVWGN-EYFGDAGTVTVLIRRIREKIEKDPANPTYLRTVWGIGYKFE 232


>gi|187779051|ref|ZP_02995524.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC
           15579]
 gi|187772676|gb|EDU36478.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC
           15579]
          Length = 234

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G    + F+ LE  E  Q      +  ++  +       
Sbjct: 6   ILIVEDDININNMIKESLIKEGYDAGQAFHGLEAVEKFQ-GEEWHMVIMDVMMPV--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E  R IR  S+V +I +S        +     G DD + KP    E++ARV +  RR  
Sbjct: 63  IEAMRRIREKSKVSIIILSAKGEDSDKIIGLGMGADDYIVKPFSISELIARVKSNIRRAI 122

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +   + G I+   +       G+   L  +E +IL+    N  +   K Q
Sbjct: 123 YYNETSANNEDKIYQYGDIKFNMNKYIVTKGGKELALTAKEMKILKLFFENPNRVFTKVQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I+ +++G  +   + N V  H+ +LR K+ +       +++   +GY +
Sbjct: 183 IYDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDSNNPKLIETVWGIGYKL 230


>gi|325265151|ref|ZP_08131877.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029555|gb|EGB90844.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 232

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G        G  +  + + +  E L+   +E++      ++      +
Sbjct: 6   ILIVEDDKEIREGVQIYLQSQGYKV--YQAADGVEGLEVMEKEEIHLAIVDVMMPRMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD V KP    E++ARV +  RR + 
Sbjct: 64  RMTMKLREKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRRYRR 123

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E        G + +  D  +  V G    +   E +IL  L  N G+  +  +I+
Sbjct: 124 FMEKLEPKENVHVIGGLEINEDRVEVLVDGNPVKMTPIEYKILLLLAKNPGRVFSAEEIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++   ++A+  + +  H+  +R+K+  +      +     +GY I+
Sbjct: 184 ERVWQ--EKAISTDTIMVHVRNIREKIEVDPKNPKYLKVVWGVGYKIE 229


>gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 240

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G +++  ++      + +    D   ++  L   G    
Sbjct: 16  ILIVDDEPNIAYLLRECLLAQGFNVKEAHNPTDALAVVTKEPPDAMILDVMLP--GMDGY 73

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R   ++ P++ ++   SL+  L     G DD V KP    E++AR+  I RR  
Sbjct: 74  TLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S+   E        I +  +  +    G++  L   E  +L Y M N    ++K QI  
Sbjct: 134 KSDGARESPTLVFEDIELNEETHEVWKAGQLVSLSPTEFTLLRYFMVNARIVLSKRQILE 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 HVW-HYDFGGDMNVVESYVSYLRRKI-DTGEKKMLQTLRGVGYVL 236


>gi|310641862|ref|YP_003946620.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309246812|gb|ADO56379.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         ++G  L    + +  E L+   RE +  +   ++      +
Sbjct: 6   ILLVDDEPEIIKLMQIYLENEGYRL--LMARDGLEALEQVNREQIDVMVLDVMMPNMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR     P+I +S        +     G DD V KP    E++AR+ +  RR++ 
Sbjct: 64  EACMKIRETEHFPIIMLSAKGQDMDKITGLSVGADDYVTKPFSPLELVARIKSQLRRVRK 123

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + +           + + +   +  + GE   L  RE  I+E L  +RG+ ++  QI+
Sbjct: 124 YTHSSSVLEHEMVLDELSINTVTHEVTLAGESVKLTPREFAIVELLARHRGQVLSMEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++         N +  H+ K+R+K+  +      + +   +GY ++
Sbjct: 184 EKVW-KEQYLESNNTLMVHVRKIREKIETDPRKPKYLKTVWGIGYKME 230


>gi|290958392|ref|YP_003489574.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647918|emb|CBG71023.1| two-component system response regulator [Streptomyces scabiei
           87.22]
          Length = 235

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 100/237 (42%), Gaps = 30/237 (12%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++        DG ++    +G + LE         R D++ ++  +   G 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRAD----RPDIALLDVMVP--GL 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 62  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121

Query: 119 LKVSN---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
              ++                    G + + ++G +    G    L   E R+L    + 
Sbjct: 122 FGHASGGDTRAEEAGAASTGGVLTFGELVIDTEGMEVLKSGVPVALTPTEMRLLLEFSSA 181

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G  +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 182 PGTVLSRDKLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 233


>gi|229823556|ref|ZP_04449625.1| hypothetical protein GCWU000282_00854 [Catonella morbi ATCC 51271]
 gi|229787000|gb|EEP23114.1| hypothetical protein GCWU000282_00854 [Catonella morbi ATCC 51271]
          Length = 238

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 104/239 (43%), Gaps = 29/239 (12%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-------LEGFNSLEFEEWLQSSAREDVSAIEAFLIG 55
           ++I+D   V +     F  +          LEG+N+     + +S ++ D+  ++  L  
Sbjct: 4   LMIEDNESVCEMMSMFFEKEQFQGHFYHDGLEGYNA-----YAESPSKWDIVLLDINLPS 58

Query: 56  KGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                + + R IR  S + P+I ++   S    +   + G DD V KP     ++AR+ A
Sbjct: 59  --MDGITICRNIRKISKETPIIMLTAQDSESDQVIGLEMGADDYVTKPFSPLTLMARMKA 116

Query: 115 IYRRLKV-----SNNRAETG------PIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMA 162
           +YRR ++     S  + E G       +++ +  R+     ++   L  +E  +L   + 
Sbjct: 117 LYRRSQIPGTDHSQTQEEEGFDVVTKSVKINTVTREAYYNNQLIENLTPKEFDLLLTFVR 176

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +   + Q+   ++       +E  V++HI KLR+K+   +G   + +   +GY  +
Sbjct: 177 SPKRVFNREQLLKQLW-EDPFYGDERTVDAHIKKLRQKIE-VIGPQIIQTVWGVGYKYE 233


>gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 243

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +       D+G ++E   + +  E ++        A+   L+  G   LE
Sbjct: 8   LIVEDDAHIAELLRLHLRDEGYAVE--YAADGNEGMRRLEEGGWDALVLDLMLPGIDGLE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + +  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR + 
Sbjct: 66  ICKRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRTEA 125

Query: 122 --SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              N R + G +R     +    R   V      L  RE  +L +   N  K  ++  + 
Sbjct: 126 LERNARIDAGSLRQHGVAIDPIARTASVDERRLELTPREFDLLHFFARNPDKVFSRLDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 186 NQVWG-YQHEGYEHTVNTHINRLRTKIEADPSNPQRILTVWGRGYKF 231


>gi|228910661|ref|ZP_04074472.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228848929|gb|EEM93772.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 94/227 (41%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALAVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    K 
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S    E          I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDMLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  +
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFE 226


>gi|167579987|ref|ZP_02372861.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|167618057|ref|ZP_02386688.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257140105|ref|ZP_05588367.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 220

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ DG       DG +++     +    L +   E    +   L       +
Sbjct: 3   ILLVEDDRMIADGVRKALKADGCAVDWVQDGDA--ALTALGGEAYDLLLLDLGLPKRDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 216


>gi|308231597|ref|ZP_07663887.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308369995|ref|ZP_07666840.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308370458|ref|ZP_07666935.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308371718|ref|ZP_07667231.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308373532|ref|ZP_07667599.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308374053|ref|ZP_07667699.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308375208|ref|ZP_07667966.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308376453|ref|ZP_07668274.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308377474|ref|ZP_07479280.2| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308378680|ref|ZP_07668799.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308379824|ref|ZP_07669054.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308395904|ref|ZP_07669353.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu012]
 gi|308216603|gb|EFO76002.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325660|gb|EFP14511.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331909|gb|EFP20760.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335696|gb|EFP24547.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308337275|gb|EFP26126.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308343200|gb|EFP32051.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308347069|gb|EFP35920.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308351012|gb|EFP39863.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355644|gb|EFP44495.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359599|gb|EFP48450.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363527|gb|EFP52378.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308367210|gb|EFP56061.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu012]
 gi|323720956|gb|EGB30021.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CDC1551A]
          Length = 234

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++                 D   ++  L   G    
Sbjct: 6   ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLP--GIDGF 63

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+  R+ R     P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 64  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 123

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G +R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 124 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              EA   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 184 AAYEAR-SNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 223


>gi|328957344|ref|YP_004374730.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673668|gb|AEB29714.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 241

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +   ++ E    +      D+  ++  L       +
Sbjct: 8   LLVVDDEDRIRRLLKMYLERENYVISEADNGEDAVKMALENDYDLILLDLMLP--KMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR     P++ ++      + ++ F+ G DD + KP   RE++ RV+AI +R + 
Sbjct: 66  QAAEKIRESKNTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQS 125

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +        +     +          G    L  +E  +L YL  +  +   + Q+ 
Sbjct: 126 GKPKEKDNPDLIKMPHFEIDDQSHRVLADGNAVNLTPKEYDLLLYLAQSPDQIFGREQLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221
             ++  ++   +   V++H+ +LR+KL   ++     + +   LGY  +
Sbjct: 186 REVW-KYEFFGDLRTVDTHVKRLREKLTKHSEPAAKMIVTVWGLGYKFN 233


>gi|222056251|ref|YP_002538613.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. FRC-32]
 gi|221565540|gb|ACM21512.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. FRC-32]
          Length = 223

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G + +  N       L  +   D+  ++  L   G    
Sbjct: 3   ILVIEDEVKTAAFIRKGLRESGYTADVANEGFEGLDLALTREYDIIILDVMLP--GLDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IR      P+I ++   ++Q  +   + G DD + KP    E+L R+  I RR  
Sbjct: 61  QIISRIRKLKKDTPIIFLTARDAIQDRIKGLELGADDYLVKPFAFSELLVRIRTILRRGP 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V +      G + +   G      G+   L  +E  ++  L    G+ + + +I   I+ 
Sbjct: 121 VRTQELITIGDLEIDLMGHRVTRGGKRLDLTPKEFALISLLARRSGEVLTRVRIAERIWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D   + NVV+ H+ +LR K+ +      + + R +GY ++
Sbjct: 181 I-DFESDTNVVDVHMRRLRAKVDDPFEKKLIHTVRGVGYVLE 221


>gi|310827668|ref|YP_003960025.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308739402|gb|ADO37062.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 222

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +    + +  E ++ +  +D   I   ++       
Sbjct: 4   ILMVDDEEKIRAIVRKYAEFEGNEV--VEAADGMEAVKLAKSQDFDIIILDIMMPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + IR +   P+I +S        +  F+ G+DD V KP   +E++ RV AI +R   
Sbjct: 62  SACKEIRKYKDTPVIMLSARGEEYDRIHGFELGIDDYVVKPFSPKELMMRVGAILKRRGG 121

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +       + G + V   GR   + G+   +  +E  +  Y++ NRG  + + ++ + ++
Sbjct: 122 AQENKDVVKIGDLEVDFAGRRVTISGKPVEMTPKEYDLFFYMVRNRGIALTREKLITNVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   ++  +++HI  LRK L +      + + R +GY  +
Sbjct: 182 G-YDFYGDDRTLDTHIKLLRKSLGDY--SKCIVTLRGVGYRFE 221


>gi|290959872|ref|YP_003491054.1| two-component system reponse regulator [Streptomyces scabiei 87.22]
 gi|260649398|emb|CBG72513.1| putative two-component system reponse regulator [Streptomyces
           scabiei 87.22]
          Length = 241

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 6/224 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  +  +   L   G   LE
Sbjct: 21  LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGMQGGIDLVVLDLGLPGMDGLE 78

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 79  VARRLRAEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 138

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +   T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 139 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 198

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
              +     ++ HIS LRKKL  +      + + R +G+  + N
Sbjct: 199 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 241


>gi|229087735|ref|ZP_04219858.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228695570|gb|EEL48432.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 223

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E LQ  A E DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGNEALQRWAEEPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP +H E++ RV  + RR+
Sbjct: 59  YELLRVFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNHAELILRVKNMARRV 118

Query: 120 KVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N     G + ++   R   V GE   L  RE  + +   ++  +   + ++ 
Sbjct: 119 MKQGVPKDNKIIRAGELVIYPKERKVHVNGEEIDLTYREFNLCQLFASHPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      D + +   +GY ++ 
Sbjct: 179 EKVWG-FEYTGNTRAVDIMVQRLRKKLGASG--DSIKTIYGVGYKLEC 223


>gi|148658695|ref|YP_001278900.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570805|gb|ABQ92950.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 245

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +         D    +    +        + ++ DV  ++  +        
Sbjct: 21  ILIADDDPSIAMLIQVTLKDPRYEIVAVKNGLEALKAFNESKFDVVILDVMMPYV--DGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E  + IR  S VP+I ++        +  F+ G DD + KP    E++ARV AI RR+  
Sbjct: 79  EACQRIRERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEG 138

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +V+      G I +        V+G+   L   E  +L +L AN G    +  +F  
Sbjct: 139 YKHRVAPPVVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFRE 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G +D   E N+V+  + +LR+K+  +      + + R +GY +
Sbjct: 199 VWG-YDYVGETNLVDVCVRRLREKVEAEPSRPRMILTVRGVGYKM 242


>gi|72383034|ref|YP_292389.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72002884|gb|AAZ58686.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 246

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +      E    +      D+  ++  L        
Sbjct: 4   ILVVDDEPAVLKVLVTRLNLAGYKVLSAQDGEQALEVFHKEAPDLVVLDVMLP--KMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IRA S VP+I ++   ++   +   D G DD + KP   +E+ AR+A I RR+  
Sbjct: 62  AVCRRIRAESCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRVGP 121

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                + G + V ++ R     GE   L   E  +LE L  + G+ V 
Sbjct: 122 APTIDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVP 181

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 182 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 232


>gi|319950313|ref|ZP_08024232.1| putative OmpR family two-component response regulator [Dietzia
           cinnamea P4]
 gi|319436005|gb|EFV91206.1| putative OmpR family two-component response regulator [Dietzia
           cinnamea P4]
          Length = 235

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++         G S+E   + + E  L+ +  +D   +   ++       E
Sbjct: 4   LVVDDEPALRESLRRGLAAGGWSVE--TAPDGEAGLEMACGDDFDVVVLDIMMPRRSGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R      P++ ++         D FD G DD + KP     + AR+ A+ RR   
Sbjct: 62  VVREMRQRGIWTPVLMLTAKDGEYDEADAFDLGADDYLVKPFSFVVLEARLRALVRRGAP 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G + V    R+         +  RE  +LEYL+ NR + V+K QI  A++  
Sbjct: 122 ERPATFEAGDLVVDPAAREVRRGDTRISVTAREYAVLEYLIRNRNQVVSKAQIMRAVWDS 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                ++N+VE ++  LR+K+    G   +++ R  GY +
Sbjct: 182 A-YDGDDNIVEVYVGYLRRKIDAPFGAHAIETVRGQGYRL 220


>gi|258593899|emb|CBE70242.1| two-component response transcriptional regulator (OmpR family)
           [NC10 bacterium 'Dutch sediment']
          Length = 244

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G+ +E  +          S    +  ++  L   G    
Sbjct: 4   ILVIDDDVELCELLTDYLTPEGIQVEAVHDGGQGAERALSGEHALVVLDVMLP--GISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA S VP++ ++        +   + G DD ++KP + RE++AR+ AI RR + 
Sbjct: 62  EVLRRIRAGSSVPVLMLTARGDDVDRIVGLEMGADDYLSKPFNPRELVARIRAIQRRAQP 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           S            R   G + V         +G    L   E  +LE L+   G+ V++ 
Sbjct: 122 SVERETGTGKAVERVVVGDVEVDPGAHIVLQRGHPVDLTSVEFTMLEVLLRASGQVVSRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
            +     G      +   ++ HIS LR+KL ++LG  + + + R +GY
Sbjct: 182 DLAKQALGRRLSPYD-RSIDVHISSLRRKLGHQLGDTERIKTVRGMGY 228


>gi|288555603|ref|YP_003427538.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
 gi|288546763|gb|ADC50646.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
          Length = 226

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D  +++D        +G  +      E  +         +  ++  L       
Sbjct: 4   LVLVVEDDDMIRDLIDIYLKKEGYDVILAADGETAKEQFLKYSPCLVILDLMLP--KISG 61

Query: 61  LELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            E+ + IRA   ++V +I ++   S    +     G DD V KP    E++AR+ A+ RR
Sbjct: 62  EEVCQWIRAQERNEVSIIMVTAKTSSDHKISGLKMGADDYVTKPFSPNELMARIEAVLRR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     + +     +  + GE+ PL + E  +L Y M N    +++ Q+   I+
Sbjct: 122 GGQFCQKISHEGLVIKPRKGEVLLNGELVPLTKYEFNLLYYFMENPNIVLSREQLIKQIH 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              +  + +  +++HI KLR+K+         + + R +GY  
Sbjct: 182 PDDEADILDRTIDAHIKKLREKIETEPKKPQRIVTVRGMGYQF 224


>gi|269123509|ref|YP_003306086.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
 gi|268314835|gb|ACZ01209.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
          Length = 224

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  ++  N  + +E L ++       I   ++       
Sbjct: 5   ILIIEDDVKIARIIEVELKFEGFDIQIEN--DGKEGLLAAKYNHFDLILLDVMLPKMNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP+I ++    +   +  FD G DD + KP  + E++ARV A+ RR  +
Sbjct: 63  EVCKRIREDSDVPIIFLTAKDQITDKVISFDYGADDYITKPFSNEELIARVKALLRRSTL 122

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N + E      +R+     +    GE+  L ++E  +L+YL+ N+G  + +  I   ++
Sbjct: 123 KNKKKEDFIFEDLRISYTAHEVYRGGELIQLSKKEFELLDYLVLNKGIVLGRDSILEEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD+    N+++ +I  LR K+        + +KR +G+  
Sbjct: 183 G-FDQIGNNNILDLYIKYLRDKIDKPYLRKFIQTKRGIGFVF 223


>gi|324112281|gb|EGC06259.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
          Length = 223

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQFLESGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                IR      P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKHTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G +++    R   +  E   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 TQGESELNIGNLKLIMGRRQVWMGNEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR K+    G + + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLRDKI----GKERIRTVRGFGYML 216


>gi|257092800|ref|YP_003166441.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045324|gb|ACV34512.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 220

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 9/218 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  ++          DG + +     +  E   ++   D+  ++  L   G   L+
Sbjct: 4   LLVEDDPMIGKSVQQGLRQDGHTADWLRDGQQAELALATTPYDILLLDLGLP--GRSGLD 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +  R+ R+ + +P++ I+   ++   +   D+G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  VLTRLRRSANSIPVLVITARDAIADRIRGLDAGADDYLVKPFDLDELSARMRAVQRRHAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    E GP+R+     +  + G    L  RE  +L+ L+   G  +++ ++   +YG 
Sbjct: 122 RAEPVIENGPLRMNPATHELTLDGTPVTLSAREFALLQALLEQPGVPLSRARLEEKLYGW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            DE +E N VE +I  LR+KL    G + + + R +GY
Sbjct: 182 GDE-IESNAVEVYIHSLRRKL----GAEQIKNIRGVGY 214


>gi|239995786|ref|ZP_04716310.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Alteromonas macleodii
           ATCC 27126]
          Length = 226

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V          +G                SS   D   ++  L         
Sbjct: 4   LLVEDDPKVASHIANGLLGEGHECITVGDGTSGYQQASSNELDAVILDVMLPE--LDGFS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R      P++ +S    ++  +    +G +D + KP    E+LARV  +  R K 
Sbjct: 62  VLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNKE 121

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +    R      +   L  +E ++LE L+ ++GK V ++ +   ++ 
Sbjct: 122 GEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVWN 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR+K+        +++ R  GY I
Sbjct: 182 -YHFDPQTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRI 221


>gi|163816389|ref|ZP_02207755.1| hypothetical protein COPEUT_02578 [Coprococcus eutactus ATCC 27759]
 gi|158448386|gb|EDP25381.1| hypothetical protein COPEUT_02578 [Coprococcus eutactus ATCC 27759]
          Length = 239

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAR-EDVSAIEAFLIG-KGE 58
            ++++D   + +         G S E  F+  E +  L        +  ++  L G  GE
Sbjct: 16  ILIVEDDTNINNLLQEALSKAGYSCEQAFSGTEAKLLLNMQEHSYALMLLDLMLPGITGE 75

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            VLE    IR    +P+I ++   SL   +    SG DD + KP   RE+LAR+    R 
Sbjct: 76  AVLE---EIRKKGNLPVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQLRH 132

Query: 119 L---KVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               ++  +      + +        + G++ P + R+E  ILE L+ N  +  +K  IF
Sbjct: 133 TEEKEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKEDIF 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 193 EYAWDEP-YMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 237


>gi|281355429|ref|ZP_06241923.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281318309|gb|EFB02329.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 231

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +++        DG   +    S E      +    D+  ++  L   G   
Sbjct: 6   ILVVEDEEAIQELIRYNLNKDGYDRVRCCESGEEALAAATEFAPDLILLDLMLP--GMDG 63

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           L + R +++    S +P+I ++        +   + G DD + KP   + ++AR+ ++ R
Sbjct: 64  LAVCRRLKSDTRTSAIPIIMLTAKSEESDIVIGLEMGADDYLPKPFSPKVLIARIKSVLR 123

Query: 118 RLKVSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R+K S+        + GP+ +    R+  + G    L   E   L  L    G    + Q
Sbjct: 124 RVKPSDAEAAAGTIKRGPLCMNRGTREALLDGRPMTLTFSEFETLYLLARRPGWVYTRGQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I + + G  D  V E  ++  +  +R+KL      D +++ R +GY  
Sbjct: 184 IVNEVKG-DDYPVTERAIDVQMVSIRRKLGTHG--DLIETVRGVGYRF 228


>gi|145298334|ref|YP_001141175.1| two-component system responsse regulator PhoP [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851106|gb|ABO89427.1| two-component system responsse regulator PhoP [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 224

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+      L  +    +   ++ +      +    DV+ I+  L       L
Sbjct: 3   ILLVEDDKLLNHHLATLLTEAQNQVHSTDNAQVALHYATDYPIDVAIIDLGLPD--MDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +L R +R      P+I ++   + Q  ++  ++G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  QLIRQLRERQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + R + G   +    ++  + GE   L   E  ILEYLM N  + V+K Q+   +YG
Sbjct: 121 GFISPRVKAGDYELDLSRKELTIGGEPVVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  +S+LRKKL  +    P+ + R  GY  +
Sbjct: 181 --DGEGDPNTIEVMVSRLRKKLDPEGNIQPISTIRRQGYIFN 220


>gi|15893741|ref|NP_347090.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023306|gb|AAK78430.1|AE007559_8 Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507864|gb|ADZ19500.1| Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 227

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +   +   +S+E  + + ++ +  +  ++  L        
Sbjct: 4   ILLVEDDEALSMGIKYTLLSEKFEVIATSSIEEAKEVFNNEKISLVLMDLMLPD--GSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R +S +P+I ++        +  FD G DD + KP   +E+++R+ A+ RR   
Sbjct: 62  DLCRELRKNSDIPIIFLTACDEEVNVVMGFDLGADDYITKPFKIKELISRIKAVLRRCSS 121

Query: 122 SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +E     + +           +   L   E ++L   + N G+ + +  I   ++ 
Sbjct: 122 REEVSELKSRDVLIDKRTLKAYKNDKEIVLTHMELKLLILFIENSGQTLKRNLILQRLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + +E V++N +  +I +LR+KL+       + + R +GY   WN
Sbjct: 182 ISEEFVDDNTLSVYIKRLREKLKEDSKNPYIVTVRGIGYR--WN 223


>gi|317491839|ref|ZP_07950274.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920273|gb|EFV41597.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 223

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        D G  ++     +  ++       D++ ++  L   GE  L
Sbjct: 3   ILVVEDNGLLRHHLSVQMRDMGHQVDAAEDAKEADFFVKEQTPDIAIVDLGLP--GEDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  RA   ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRWRAEQIKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P ++    R+  V   +  L   E  I+E L+ N  K V+K  +   +Y 
Sbjct: 121 GLASQVITLPPFQIDLSRRELTVNENLIKLTAFEYTIIETLIRNHAKVVSKDALMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              E  E + ++  + +LRKKL+N+   + + + R  GY  D N
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQNEYPQEVITTVRGQGYRFDIN 223


>gi|299769446|ref|YP_003731472.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter sp. DR1]
 gi|298699534|gb|ADI90099.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter sp. DR1]
          Length = 223

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 96/220 (43%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L        
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGMQGLEMLKRDQYDLLILDVMLPD--IDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  N      +++          G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDLVAHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDEGYDLKLIHTIRGLGYKI 219


>gi|282853701|ref|ZP_06263038.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282583154|gb|EFB88534.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314923679|gb|EFS87510.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314967118|gb|EFT11217.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314983174|gb|EFT27266.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092396|gb|EFT64372.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315103851|gb|EFT75827.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327327251|gb|EGE69027.1| DNA-binding response regulator [Propionibacterium acnes HL103PA1]
          Length = 236

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S            +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLP--GRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
            + + IR  S VP+I ++        +    +G DD V KP    E++AR+ A  R    
Sbjct: 68  RICQDIRRESGVPIIMLTARSDTPDVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVA 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 QREEGEVITVGDLTIDPAAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G +    +  +V  H+ +LR K+ RN      + + R +GY I+
Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230


>gi|257885040|ref|ZP_05664693.1| response regulator [Enterococcus faecium 1,231,501]
 gi|257820892|gb|EEV48026.1| response regulator [Enterococcus faecium 1,231,501]
          Length = 233

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 92/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D       +DG  ++ F   +           D++ ++  L        
Sbjct: 5   ILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDCIERESFDLAVLDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR +   P+I ++        +     G DD + KP +  E++AR+    RR + 
Sbjct: 63  KIVQKIRENHFFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFQK 122

Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N              +   + +        + GE   L   E  IL YL+  +G+ V  
Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLVERKGEVVPA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            Q+F A++G        N V +HI +LR+KL+        + +   +GY ++
Sbjct: 183 EQLFEAVWGEK-FLDNNNTVMAHIGRLREKLKEPTRKPKFIKTIWGVGYKVE 233


>gi|257482938|ref|ZP_05636979.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331011818|gb|EGH91874.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 224

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGMTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPE--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R      ++ ++    L+  +   + G DD + KP    E+LARV  + RR + 
Sbjct: 61  EVLSRLRKTVSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
 gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
          Length = 235

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +   +S      +  + R D   ++  +   G    
Sbjct: 10  ILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMP--GMDGF 67

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +RA     P++ ++   SL   +     G DD V KP    E++ R+  I RR  
Sbjct: 68  GLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAG 127

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  + R +   I +  D R+   +GE+  L   E  +L Y M N G  ++K +I  
Sbjct: 128 RGVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILD 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 188 HVWN-YDFGGEVGVVESYVSYLRRKV-DTGETPLIHTLRGVGYVM 230


>gi|257867512|ref|ZP_05647165.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873841|ref|ZP_05653494.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|18460982|gb|AAK53981.1| VanRc-2 [Enterococcus casseliflavus]
 gi|18476141|gb|AAK58492.1| response regulator VanRc3 [Enterococcus casseliflavus]
 gi|257801568|gb|EEV30498.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808005|gb|EEV36827.1| transcriptional regulator [Enterococcus casseliflavus EC10]
          Length = 231

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E F               DV+ ++  L        
Sbjct: 5   IIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR     P++ ++        +     G DD V KP +  E++ARV    RR + 
Sbjct: 63  QLLQQIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  A        E   + +  +     + G+   L   E +IL YL  ++G  VA   +
Sbjct: 123 YNQSANPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F A++         N V +HI++LR+KL         + +   +GY I+
Sbjct: 183 FEAVWKEK-YLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIE 230


>gi|148243637|ref|YP_001219877.1| two component heavy metal response transcriptional regulator
           [Acidiphilium cryptum JF-5]
 gi|146400200|gb|ABQ28735.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidiphilium cryptum JF-5]
          Length = 225

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A           ++G + +     E           D   ++  L  +     E
Sbjct: 4   LIVEDEAKTAAYLRKGLEENGFTADVATDGETGLEFARHGGYDAIILDIMLPRR--NGFE 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   IR   SQ  ++ ++    +   +   ++G DD + KP    E+LARV  I RR   
Sbjct: 62  ILDEIRRRDSQTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGHA 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + +   G      G+   L  +E R+L  L    G  +++T I   ++ +
Sbjct: 122 RQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWDI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+ H+ +LR KL +      + + R +GY ++
Sbjct: 182 -NFDSGTNVVDVHMYRLRAKLDDPFSRRLIHTVRGVGYVLE 221


>gi|315651221|ref|ZP_07904251.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315486517|gb|EFU76869.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G  ++   S + +E L+ +  ED   +   L+  G    E
Sbjct: 5   LIIEDEVSIAELERDYLEISGFEVDI--STDGKEGLEKALSEDYDLVLLDLMLPGLDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R IRA  ++P++ +S   +    +     G DD + KP    E++ARV A   R    
Sbjct: 63  ICRRIRATKEIPIVMVSAKKNDIDKIRGLGLGADDYMTKPFSPSELVARVKAHINRYDRL 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +  E   +++ S  R     G+   L  +E  IL +L  +  K  AK  +F 
Sbjct: 123 AGVSAANRDIIEVRELKIDSSSRRVWSYGKERTLTAKEFDILRFLAEHPNKVYAKEDLFK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++GL +   + + V  HI  +R+K+  +      +++   +GY  
Sbjct: 183 EVWGL-ESMGDISTVTVHIKNIREKIELDSSKPQFIETIWGVGYRF 227


>gi|317133437|ref|YP_004092751.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315471416|gb|ADU28020.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 226

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++ G       +G  +    + +  E +     +D  AI   ++       
Sbjct: 4   ILIVDDETNIRAGLREYAEFEGHEVT--EAGDGMEAVTICREQDFDAIIMDVMMPKLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + IR    +P++ +S        L  F+ GVDD V KP   +E++AR+  I  R + 
Sbjct: 62  SACKEIRKTKDIPVLMLSARGEEYDKLFGFEVGVDDYVVKPFSPKEVMARLRVIISRNRQ 121

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + V   GR   V G+   L  +E  +L YL+ NR   +++ Q+  
Sbjct: 122 HLQNGGPMQTFRHDGLVVDLAGRSVMVDGQKAELTPKETDLLFYLVQNRNLALSRAQLLQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++G +D   ++  V++HI  LR  L      D + + R +GY  + +
Sbjct: 182 DVWG-YDFYGDDRTVDTHIKMLRSSLGKY--KDAIVTLRGVGYKFEVH 226


>gi|229116660|ref|ZP_04246046.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228666832|gb|EEL22288.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 228

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++    +++ +E L      +V  I   ++       
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNI--LEAIDGKEALSIFEEYEVHLIILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +      +   +  I +    R   + GE   L   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 SAVKVLTADTLTSSGIHLHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  + SHI  LR KL  K     + +    GY  +
Sbjct: 183 KIFG-YEFAGDDRTINSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225


>gi|163749892|ref|ZP_02157137.1| DNA-binding response regulator [Shewanella benthica KT99]
 gi|161330406|gb|EDQ01385.1| DNA-binding response regulator [Shewanella benthica KT99]
          Length = 225

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +  +  F + G ++E  +       L +S   D+  ++  L       L
Sbjct: 3   ILLVEDDTTTIEYVVKGFIEQGHNIETASDGHQGLLLATSMNYDLVILDRMLPQ--LDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R  
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGL 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +      G + +    R   + G    L  +E ++L+YLM +  + V++T +F A++
Sbjct: 121 SQPAETELSVGNLVMELLTRKVTLDGSELMLQPKEFQLLKYLMEHPNQVVSRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221


>gi|163849781|ref|YP_001637824.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|163661386|gb|ABY28753.1| response regulator receiver [Methylobacterium extorquens PA1]
          Length = 232

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +  F + G +++          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALACEGDYDVLIVDRMLP--KLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R  +   P++ +S    +   +    +G DD + KP    E+LAR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  ++E      G + +          G    L  RE R+LEYLM + G+ V +T +  
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 181 HVWD-YHFDPQTNVIDVHVSRLRAKIDRGFEHPMIHTVRGAGYVI 224


>gi|154496215|ref|ZP_02034911.1| hypothetical protein BACCAP_00500 [Bacteroides capillosus ATCC
           29799]
 gi|150274298|gb|EDN01375.1| hypothetical protein BACCAP_00500 [Bacteroides capillosus ATCC
           29799]
          Length = 233

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G     F + +  E L+   ++D+  +   ++  G   +
Sbjct: 7   ILICDDDKDIVSALDIYLTSEGYK--TFKAYDGLEALKVVDQQDIQLVLLDVMMPGLDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                +R    +P+I ++        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 65  RTTAKLRESKNIPIILLTAKSEDSDKILGLNIGADDYITKPFNPIEVIARVKSQLRRYTT 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K  +N    G I +    +   V GE   L   E  IL+ L+ + G+  + +QI+
Sbjct: 125 LGGREKTEDNVIRNGGIAMDDGAKSVTVDGESVSLTPIEYNILKLLLKSPGRVYSTSQIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++        EN V  HI  LR+K+  +      +     LGY ++
Sbjct: 185 EQVWNDP-SLGSENTVAVHIRHLREKIEIDPANPRYIKVVWGLGYKME 231


>gi|25026834|ref|NP_736888.1| sensory transduction protein [Corynebacterium efficiens YS-314]
 gi|259506103|ref|ZP_05749005.1| phosphate regulon transcriptional regulatory protein PhoB
           [Corynebacterium efficiens YS-314]
 gi|23492113|dbj|BAC17088.1| sensory transduction protein [Corynebacterium efficiens YS-314]
 gi|259166319|gb|EEW50873.1| phosphate regulon transcriptional regulatory protein PhoB
           [Corynebacterium efficiens YS-314]
          Length = 240

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G      ++             DV  ++  L       LE
Sbjct: 16  LIVDDEKPLAQMVETYLLRAGFETVQAHTGIDAVHEARRFSPDVVILDLGLPE--LDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +RA S   ++ ++   S +  +     G DD + KP   RE++ RV A+ RR ++ 
Sbjct: 74  VCRQVRAFSDCYILMLTARGSEEDKITGLTMGADDYITKPFGIRELVTRVRAVMRRPRIT 133

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++     G + +        V G    +   E  +L  L    G+  ++ ++ + 
Sbjct: 134 VTGPGTDAPLIIGDLVIDPSAHTVRVGGGAVDITPTEFDLLLALALRPGRVCSRRELVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL  +  G   +D+ R +GY +
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDARGRGLIDTVRGVGYRL 237


>gi|17229456|ref|NP_486004.1| two-component system response regulator [Nostoc sp. PCC 7120]
 gi|17131054|dbj|BAB73663.1| two-component system response regulator [Nostoc sp. PCC 7120]
          Length = 236

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 102/228 (44%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      +   +G ++E     +    + +    D+  ++  L   G+  L
Sbjct: 9   ILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLP--GKTGL 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ + +R   ++ P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 67  EICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSS 126

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +  R     + +  + +    QG V  L ++E ++L+Y M + G+ +   QI  
Sbjct: 127 SQTYEATPGRLTVADLELDCENQVAYRQGRVIELSQKESQLLQYFMEHTGQLLTHAQILQ 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++   +E    NV+ + I  LR+K+        + +    GY    N
Sbjct: 187 HLW-EDNEPPNSNVIAALIRLLRRKIEVGKELPLIHTVYGKGYRFGTN 233


>gi|330957583|gb|EGH57843.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 220

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G      ++G +L+     +    L +   E    +   L        
Sbjct: 3   LLLVEDDRAIGQGIRVALNNEGYTLDWLE--DGLSALHALRSEPFDLLLLDLGLPRMDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLVKPFDVDELKARVRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +    QG   P+   E ++L  LM   GK V + ++ + +YG
Sbjct: 121 GRAQPLLEHAGISLDPASQQVTFQGNEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E  I  LRKKL      + + + R +GY ++
Sbjct: 181 WQDK-VESNTLEVLIHNLRKKL----STELIRTVRGVGYLLE 217


>gi|319408243|emb|CBI81896.1| two-component system regulatory protein [Bartonella schoenbuchensis
           R1]
          Length = 222

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G   +     E   +L S+   D   ++  L       +
Sbjct: 3   ILIVEDDRDLNDQLAEALKNAGYVFDCVFDGEEAYFLGSTEPYDAVILDIGLPR--MDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    R     +P++ ++        +   D+G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  RVVEKWRQEGYSMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHIEEVIARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N    G + + +      V G++  L   E R+L YLM +  + V++T++   +Y 
Sbjct: 121 GHATNSLSCGSVLLDTKTSRVFVDGQLIKLTSHEFRLLSYLMHHCDQIVSRTELIEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL    G D +++ R +GY +
Sbjct: 181 Q-DFDKDSNTIEVFVGRLRKKL----GVDLIETVRGMGYRV 216


>gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator
           [cyanobacterium UCYN-A]
 gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family
           [cyanobacterium UCYN-A]
          Length = 243

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +      E    +   +  D+  ++  +        
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFYDSVPDLVVLDVMMP--KLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S +P+I ++    +   +   + G DD V KP   +E+ AR+ ++ RR++ 
Sbjct: 66  GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +N             +++ ++ R      E   L   E  +LE L+   G+  ++++I 
Sbjct: 126 GSNPGIPNSGVISIASVKIDTNKRQVYKGDERIRLTGMEFSLLELLVGCSGEPFSRSEIL 185

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGY 231


>gi|229012369|ref|ZP_04169546.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229167829|ref|ZP_04295561.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228615645|gb|EEK72738.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228749005|gb|EEL98853.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 232

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +      E    +  S   D+  ++  +        
Sbjct: 6   ILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMP--KMDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR    +P+I +S   S    +     G DD + KP    E++ARV A  RR   
Sbjct: 64  EVTRQIRVKYNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFAPIELVARVNAQLRRFLT 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++ + +  E G + +  + R   V GE   L  +E  IL  L+++  K  +   I
Sbjct: 124 LNQPKVEENKSVLEVGGVVINLEQRKLNVYGEQIELTPKEFDILYLLVSHPKKVYSVENI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              ++           V  HI  LRKK+  +      + +   +GY+ +
Sbjct: 184 LQQVWADDYYDGGS-TVAVHIRTLRKKIGEDTRKNKLIKTVWGVGYTFN 231


>gi|225570310|ref|ZP_03779335.1| hypothetical protein CLOHYLEM_06406 [Clostridium hylemonae DSM
           15053]
 gi|225160842|gb|EEG73461.1| hypothetical protein CLOHYLEM_06406 [Clostridium hylemonae DSM
           15053]
          Length = 228

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +  G       +G  +E  +  +           ++  ++  L       L
Sbjct: 3   ILIIEDDGGLSRGITFTMEREGYKVECCSGYKQGLAKVQKTPPELILLDWNLPD--GDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L + IR  S VP++ I+        +   + G DD + KP     + ARV+A+ RR   
Sbjct: 61  DLCKKIREFSHVPILMITARDMEMDEVMCLECGADDYIAKPFSLAVLKARVSALSRRYVL 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S     +G I +               L   E R+L+Y + N+ + + K QI   ++
Sbjct: 121 KTGSKRLLVSGDISIDGAEMKAYKGDRALDLSLTEFRLLKYFLENKNQVLLKEQILEYVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +    VEEN +  +I +LR+KL  N    + + +   +GY  +
Sbjct: 181 DMGGTFVEENTLTVNIGRLRRKLETNSSSTEYIKTIHGMGYLWE 224


>gi|160893495|ref|ZP_02074280.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
 gi|156864890|gb|EDO58321.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
          Length = 227

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +           L  S   D+  ++  L       L
Sbjct: 5   ILIVEDEEKIARFVELELVHEGYEVIKAFDGRTGLDLALSEHADLIVLDVMLPR--LNGL 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R IR   + VP++ ++   ++   +   D+G DD + KP    E+LAR+    +R  
Sbjct: 63  EVLRRIRKEGNNVPILLLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRVALKRKS 122

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   ++ E   + + +D  +  V GE   L  RE  +L  LM N+   + + ++ + +
Sbjct: 123 TDRQETHKLEIHGVSLDTDRHEVMVAGEPVELTNREFELLHTLMENKNIVMDREKLMNIV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G ++   E N+++ +I  LR K+ ++ G   + + R +GY I
Sbjct: 183 CG-YEYVGETNIIDVYIRYLRTKIDDRFGIKLITTVRGVGYVI 224


>gi|75910544|ref|YP_324840.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704269|gb|ABA23945.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 236

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 101/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      +   +G ++E     +    + +    D+  ++  L   G+  L
Sbjct: 9   ILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLP--GKTGL 66

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ + +R   ++ P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 67  EICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSS 126

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +  R     + +  + +    QG V  L ++E ++L+Y M + G+ +   QI  
Sbjct: 127 SQTYEATPGRLTVADLELDCENQVAYRQGRVIELSQKESQLLQYFMEHTGQLLTHAQILQ 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   +E    NV+ + I  LR+K+        + +    GY  
Sbjct: 187 HLW-EDNEPPNSNVIAALIRLLRRKIEVGKELSLIHTVYGKGYRF 230


>gi|308084106|gb|ADO13169.1| QseB [Edwardsiella tarda 080813]
          Length = 219

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D  L+ DG  A     G SL+ F           SA  D   ++  L   G   LE
Sbjct: 4   LLIEDDRLIGDGIKAGLSKMGFSLDWFTDGLQGMTALESAPYDAVILDLSLP--GIDGLE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R  R      P++ ++   +L+  +     G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  ILRRWREAGHAEPVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIRRNHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +        + G   PL  +E  +LE L+ N G+ + ++ I   +Y  
Sbjct: 122 QAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D+ V  N VE HI  LR+KL +      + +   +GY++
Sbjct: 181 WDDDVSSNAVEVHIHHLRRKLGSHF----IRTVHGVGYTL 216


>gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 235

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E                 D+  ++  L       +
Sbjct: 9   ILIVEDEKNLARFVELELKHEGYETELAKDGRIGLEKAQEGNWDLILLDLMLPE--INGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S+   +  FD G DD + KP    E+LAR+ A+ RR+ +
Sbjct: 67  EVCRRLRPTSDVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIDI 126

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +            + V  + R      E+  L +RE  +L  LM N    + +T++ 
Sbjct: 127 EEEQQHRKQTKVTFRDLSVEKENRIVRRGEEIIDLTKREYELLVMLMENVNVVLPRTELL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G +   VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 187 NKVWG-YTTEVETNVVDVYIRYLRNKIDVDGQPGYIQTVRGTGYVM 231


>gi|260773415|ref|ZP_05882331.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           metschnikovii CIP 69.14]
 gi|260612554|gb|EEX37757.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           metschnikovii CIP 69.14]
          Length = 209

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 92/205 (44%), Gaps = 9/205 (4%)

Query: 24  VSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIG 77
           +  +G+ ++E E++  +  +      D+  ++  L  G G   ++  +       +P++ 
Sbjct: 2   LEQKGYQAVEAEDYDSAVTKLVEPFPDLVLLDWMLPGGSGINFIKHMKREELTRNIPVVM 61

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFS 135
           ++     +  +   + G DD + KP   +E++AR+ A+ RR+  ++  +  +   +++  
Sbjct: 62  LTARGEEEDKVRGLEVGADDYITKPFSPKELIARLKAVIRRVTPTSLEDVIDVQGLKLDP 121

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
                        +   E ++L + M  + +  ++ Q+ + I+G  +  VE+  V+ HI 
Sbjct: 122 VSHRVTADDVALDMGPTEFKMLHFFMTQQERVYSREQLLNNIWGT-NVYVEDRTVDVHIR 180

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220
           +LRK L +      + + R  GY  
Sbjct: 181 RLRKALEDAGHDKLIQTVRGAGYRF 205


>gi|228907600|ref|ZP_04071457.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           200]
 gi|228852092|gb|EEM96889.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           200]
          Length = 242

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R +R    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRVREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + G+   L + E  IL  + A + +     +I
Sbjct: 134 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGDTMNLTKTEYDILYLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|190890997|ref|YP_001977539.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696276|gb|ACE90361.1| two-component response regulator protein [Rhizobium etli CIAT 652]
          Length = 223

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPE--MDGV 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    R A   VP++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  TVLEKWRGAGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIVCGPVRLDTKSSKATVNGTALKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|124112128|ref|YP_001019064.1| regulatory component of sensory transduction system [Chlorokybus
           atmophyticus]
 gi|124012235|gb|ABM87971.1| regulatory component of sensory transduction system [Chlorokybus
           atmophyticus]
          Length = 241

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 97/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A+V+          G ++   N  E    +    +  +  ++  +        
Sbjct: 10  IMVVDDEAIVRQIIQTRLSMIGYNVITANDGEEAIKMFFKEQPQLVVLDVMMP--KLDGY 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP+I ++    +   +   + G DD + KP   +E+ AR+ +++RR   
Sbjct: 68  SVCQQLRRESDVPIIMLTALEDVADRITGLELGADDYIMKPFSPKELEARIRSVFRRSNR 127

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         ++    G + +    +      +   L   E  +LE L+   G+ V++ +
Sbjct: 128 NSYVVKQNKDSSIINIGSLIIDKKRKQVFKDNKRLRLTGMEFSLLELLINRSGESVSRYE 187

Query: 173 IFSAIYGLF-DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           I   ++    D  ++  VV+ HIS+LR KL  +    D + + R +GY
Sbjct: 188 ILKEVWEYGNDSYIDTRVVDVHISRLRSKLEEDPANPDLILTVRGIGY 235


>gi|301061392|ref|ZP_07202164.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300444516|gb|EFK08509.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + E    +    R D+  ++  L   G   L
Sbjct: 6   ILVVDDEEDILELVNFNLAKEGYRVISTTTGERAVEMSRVERPDLIVLDLMLP--GMDGL 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + ++ +     +P++ ++        +   + G DD V KP   + +LAR+ A+ RR
Sbjct: 64  EVAKFLKKNQETQNIPIVMLTAKGEESDVVTGLELGADDYVTKPFSPKILLARIRAVLRR 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   ++  +   + +    R+  V  +V  L   E  IL YL+   G    ++QI 
Sbjct: 124 KATETPKPSDVIKVQNLIIHPGRREVRVDDKVIDLTYTEFGILRYLVQRPGWVFTRSQIV 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A+ G  D  V +  V+  I  LRKKL        +++ R +GY  
Sbjct: 184 DAVRG-SDYFVTDRSVDVQIVGLRKKLG--FMGKYIETVRGVGYRF 226


>gi|237793685|ref|YP_002861237.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229263015|gb|ACQ54048.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 234

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 93/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D       ++G       +    E L+     +V  I   ++      +
Sbjct: 6   ILIVDDEKEIRDLIDIYLTNEGYI--TLKASNGIEALELLKTNNVHLIILDIMMPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E    IR    +P+I +S        +    +G DD + KP +  E+LARV +  RR   
Sbjct: 64  EACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     + +      I +     + ++  +   L  RE  ILE L  NRG   +  
Sbjct: 124 LNNSNGNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIE 183

Query: 172 QIFSAIYGLFDEAVEE-NVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +I+  ++   +E ++  N V  HI KLR+K+         + +   +GY ++
Sbjct: 184 KIYELVWK--EEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVE 233


>gi|197285448|ref|YP_002151320.1| DNA-binding transcriptional regulator BaeR [Proteus mirabilis
           HI4320]
 gi|227355932|ref|ZP_03840324.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194682935|emb|CAR43323.1| two-component system response regulator [Proteus mirabilis HI4320]
 gi|227163920|gb|EEI48822.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 235

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 88/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I          +              +  D+  ++  L   G+  +
Sbjct: 10  ILIVEDEPKLAQLLIDYLQASDYQTQWLADGTEVIQHIKQSHYDLVLLDLMLP--GKDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R  S +P+I ++        L   + G DD + KP   RE++ARV  + RR   
Sbjct: 68  TLCKELRQFSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRRYYR 127

Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +  +   +  +       +   ++  L   E R+++ L    GK +++ Q+   +Y  
Sbjct: 128 PQDIVQNSALVIIDEQAYQIQYHNKILDLTTAEFRLIKALATQPGKVLSRDQLMDHLYDD 187

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +   V +  ++SHI  LR+KL       + + S    GY  +
Sbjct: 188 Y-RIVTDRTIDSHIKNLRRKLEQLNDQIEFIRSIYGQGYRWE 228


>gi|91779387|ref|YP_554595.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91692047|gb|ABE35245.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 226

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVMLP--GQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R     P++ ++    +   +   + G DD + KP    E++ARV +I RR K 
Sbjct: 61  TLLHNLRRTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGKP 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RETMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+S I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFNSDTNVVDSAIRRLRSKVDDAYEPKLIHTVRGMGYVLEV 221


>gi|309700427|emb|CBI99718.1| DNA-binding response regulator transcriptional regulator
           [Escherichia coli ETEC H10407]
          Length = 226

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R A    P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  + +LR K+ N      + + R +GY ++
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLE 222


>gi|253575382|ref|ZP_04852720.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845379|gb|EES73389.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 248

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G  ++   +      + ++   D+  ++  L        +
Sbjct: 17  LVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPD--MDGWQ 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR    V ++ ++     +  +     G DD + KP    E+LARV ++ RR  ++
Sbjct: 75  VCKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +        E   +R+  +GR+  +        ++E  +   L  +  +  ++ ++ + 
Sbjct: 135 QSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELVNL 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           I+G  +   E  VV++HI  +R+K +   LG++P+ +   +GY  +
Sbjct: 195 IWG-DEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFN 239


>gi|227504192|ref|ZP_03934241.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227199236|gb|EEI79284.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 232

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 98/231 (42%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  +    + +  E +++   E+   +   ++      L
Sbjct: 3   ILVVDDEQAVRESLRRSLRFNGYDV--LIASDGVEAVETVRSENPELLILDVMMPNMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +R+      ++ ++    +   +   D+G DD + KP    E+LARV ++ RR  
Sbjct: 61  EVCRTLRSEGWDRSILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S  +     + + +D R+ +       L R E  +L+ LM +  K +++  
Sbjct: 121 ANSIGVKTASKTQLSFEDLHLNADTREVKRGERAISLTRTEFALLQLLMESPRKVLSRNT 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           I   ++G +D     N +E +I  LRKK         + + R +GY +  N
Sbjct: 181 ILEEVWG-YDFPSSGNALEVYIGYLRKKTEGGGESRLIHTVRGVGYVLREN 230


>gi|33241229|ref|NP_876171.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238759|gb|AAQ00824.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 269

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +   +  E    +      D+  ++  L        
Sbjct: 28  ILVVDDEPAVLKVLVTRLELAGYKVVSASDGEEALDVFHREIPDLVVLDVMLP--KLDGF 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 86  AVCRRLRAESIVPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 145

Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             + AE             G + V ++ R     GE   L   E  +LE L  + GK V 
Sbjct: 146 GASVAEPREIPAGQGVMKLGELVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGKVVP 205

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GYS
Sbjct: 206 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYS 257


>gi|119387030|ref|YP_918085.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377625|gb|ABL72389.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D    ++        +G  +    + +    L +  + D+  ++  L       +E
Sbjct: 9   LVVEDEGAQREVLKYNLEAEGFDVVLAENGDEAMLLVAEEQPDLIVLDWMLPNV--SGIE 66

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++A     Q+P+I +S        +   ++G DD V KP    E++AR+    RR 
Sbjct: 67  ICRRVKADPSTRQIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARLRTQLRRT 126

Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + ++   R     I + +        G+   L   E R+L  LM   G+   + Q+   +
Sbjct: 127 RPASMGERLSFADIILDAGEHRVFRAGQPVHLGPTEFRLLSTLMEKPGRVWTREQLLDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   ++ H+ +LRK L    G +PV + R  GYS+
Sbjct: 187 WGR-DIYVDTRTIDVHVGRLRKALMANGGNNPVRTVRGTGYSL 228


>gi|315646998|ref|ZP_07900112.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277650|gb|EFU40975.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++G  +           L       +  ++  L       + 
Sbjct: 7   LIVDDDKEIRDVLHVYLRNEGYHVLEAEDGLQALQLLQQHEVQLIILDVMLP--KLDGIA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR  S +P+I +S        +    +G DD V KP H  E++ARV A  RR    
Sbjct: 65  ACLQIRERSAIPIIMLSAKVESLDKITGLSTGADDYVTKPFHPVELMARVKAQLRRQNFL 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +    G + +       +V+G    L   E  ILE L ANRG+  + ++I   
Sbjct: 125 SLREEEPSEIHIGDLSIHKKQHLVKVRGAAVSLTPIEFSILELLAANRGQIFSVSKIHEC 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++        +N V  HI  +R+K+         + +   +GY I+
Sbjct: 185 VWKEQTPFFSDNTVMVHIRNIREKIELVPRKPQYIKTVWGVGYKIE 230


>gi|148243511|ref|YP_001228668.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147851821|emb|CAK29315.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +          +G S  G             +   ++ ++  +       L
Sbjct: 8   ILIADDEANILMLLEMELQAEGFSTIGCGDGAKALAQIRESAPAIALLDWNMPI--ITGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R     +P+I I+    +   +   ++G DD ++KP + RE+LARV A+ RR  
Sbjct: 66  DVCRRLRDTGNRIPVIMITARDEMDDRVAALEAGADDFISKPFNIREVLARVKALLRRST 125

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S ++   G + +    R     G+   L  RE  +LE  + N  + +++TQ+   ++G
Sbjct: 126 AISPDQLNFGDLHLNGAERRCSYGGQELTLTVREFDLLECFLRNPRQALSRTQLIQNVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   ++NVV+ ++  LR+KL        + + R +G+++
Sbjct: 186 E-DYFGDDNVVDVYVRYLRRKLEEVKPDRIIQTIRGIGFAL 225


>gi|302559265|ref|ZP_07311607.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302476883|gb|EFL39976.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 231

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 101/233 (43%), Gaps = 26/233 (11%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++        DG ++    +G + LE       + R D++ ++  +   G 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAF----RTDRPDIALLDVMVP--GL 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 62  DGVSLCRRIRDESMVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121

Query: 119 LKVSN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
              +N                G + + + G +    G+   L   E R+L    A  G  
Sbjct: 122 FGRANGGREEPAADAGGVLAFGELEIDTGGMEVRRAGQPVALTPTEMRLLLEFSAAPGTV 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 182 LSRDKLLERVW-EYGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 229


>gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
 gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
          Length = 243

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +   +S      +  + R D   ++  +   G    
Sbjct: 18  ILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMP--GMDGF 75

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +RA     P++ ++   SL   +     G DD V KP    E++ R+  I RR  
Sbjct: 76  GLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAG 135

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  + R +   I +  D R+   +GE+  L   E  +L Y M N G  ++K +I  
Sbjct: 136 RGVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILD 195

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 196 HVWN-YDFGGEVGVVESYVSYLRRKV-DTGETPLIHTLRGVGYVM 238


>gi|222056601|ref|YP_002538963.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221565890|gb|ACM21862.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 222

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +                  +          + + ++  ++  L GKG   
Sbjct: 4   MILIVEDEEKLAKLLADYLHQADYETHCLSDGSRVVPWIQAQKPEMILLDLMLPGKG--G 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR+ S VP+I I+        L   + G DD + KP   RE++ARV A+ RR  
Sbjct: 62  LEICKEIRSFSSVPIIMITARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRAH 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        + +        +      L   E ++L  L A+ G+   + Q+   IY  
Sbjct: 122 GA-EAVNGKELVLDDSRYRAMLHDRDLHLTAVEFKLLSLLAASPGRIFGRQQLMDHIY-P 179

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
               V +  ++SHI KLR+KL     G + + S    GY  +
Sbjct: 180 DQRIVSDRTIDSHIKKLRRKLSGADPGQEYIHSLYGAGYKFE 221


>gi|326201098|ref|ZP_08190970.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988666|gb|EGD49490.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 233

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 93/231 (40%), Gaps = 19/231 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   +          +G  +    +G  ++E+ E      +  +  ++  L   G
Sbjct: 7   ILIVEDDRDINRLIADNLVKEGYCVTSTYDGAAAIEYFEAD----KFQLVILDIMLPKIG 62

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+ + IR     P++ +S        +     G DD + KP    E+ ARV A  R
Sbjct: 63  --GYEVLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLR 120

Query: 118 RL-------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           R        ++         I +  +  + +V G    L  +E  IL+  + N  K   K
Sbjct: 121 RFLKFSCEPQLQTQIVRHMDIEMDINTYEVKVGGNSVTLTAKEFEILKLFLKNPKKVFTK 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            Q+F +I+G  +   +EN V  HI +LR+K+  +      + +   +GY +
Sbjct: 181 NQMFKSIWGE-NYINDENTVMVHIRRLREKIEKDPSNPRYIQTIWGIGYKL 230


>gi|256850843|ref|ZP_05556232.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661054|ref|ZP_05861968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934486|ref|ZP_06339741.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|297205717|ref|ZP_06923112.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615905|gb|EEU21093.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547991|gb|EEX23967.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301433|gb|EFA93722.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|297148843|gb|EFH29141.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 240

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+      L  + + D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLMLPD--LNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+ +
Sbjct: 62  EIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVNI 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          +   + + +  R      +   L +RE  +L  L+ N+   V++ 
Sbjct: 122 EKKVSSNAAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + I+G  D  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 182 QLLNKIWGP-DSNIETNVVEVYVRYLRNKIDAPDRPSYIKTVRGTGYMV 229


>gi|157144972|ref|YP_001452291.1| DNA-binding transcriptional regulator BaeR [Citrobacter koseri ATCC
           BAA-895]
 gi|157082177|gb|ABV11855.1| hypothetical protein CKO_00702 [Citrobacter koseri ATCC BAA-895]
          Length = 240

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLQYVHQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ V         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQLDAQSPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|289677021|ref|ZP_06497911.1| two component transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
          Length = 227

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D  L+  G +A     G++L+   S      +  +A+ DV  ++  L    E  + 
Sbjct: 4   LLCEDDELIASGIVAGLHAQGLNLDRVGSASAAHAILDAAQFDVMILDLGLPD--EDGIS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R +R+    +P++ ++    +   +    +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLRSLRSRGHNIPVLILTARDDVDDRVKGLHAGADDYMVKPFDLRELFARLHTLVRRVAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N  E G +      R+  + G    L RRE+ +L  L+ N G+ ++  Q+  ++YG 
Sbjct: 122 RTVNHIEHGILTYDPSTRETWLSGTAIDLSRREQAVLLALLNNPGRVLSLEQLKDSVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+KL    G   +++ R  GY +
Sbjct: 182 TDE-VESNALNVHIFHLRRKL----GVQIIETVRGSGYRL 216


>gi|220909111|ref|YP_002484422.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865722|gb|ACL46061.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 263

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L      D+  ++  L        
Sbjct: 5   ILVIDDDPAIAELVAINLEMAGYDVSQAADGVKGQALAVQLMPDLIMLDLMLPRV--DGF 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     S +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 63  TVCQRLRRDERTSAIPILMLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRR 122

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +     +V  L R E  +L  L+   G+ VA ++
Sbjct: 123 TDRIPQAAKHSEILSYGPLTLIPERFEVVWLDKVIKLTRLEFELLHCLLQRHGQTVAPSE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 183 ILKEVWG-YDPDDDIETIRVHVRHLRTKLEPDPRHPRYIKTVYGAGYCLE 231


>gi|218528425|ref|YP_002419241.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|218520728|gb|ACK81313.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
          Length = 232

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +  F + G +++          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAAAYLVKAFREAGHAVDHAGGGLDGYALAREGDYDVLIVDRMLP--KLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R  +   P++ +S    +   +    +G DD + KP    E+LAR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  ++E      G + +          G    L  RE R+LEYLM + G+ V +T +  
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 181 HVWD-YHFDPQTNVIDVHVSRLRAKIDRGFEHPMIHTVRGAGYVI 224


>gi|156740441|ref|YP_001430570.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231769|gb|ABU56552.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 245

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +         D    +    +          ++ DV  ++  +        
Sbjct: 21  ILIADDDPSIGTLIQVTLKDPRYEIVAVKNGLEALKAFDESKFDVVILDVMMPYV--DGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E  + IR  S VP+I ++        +  F+ G DD + KP    E++ARV AI RR+  
Sbjct: 79  EACQRIRERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEG 138

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +V+      G I +        V+G+   L   E  +L +L AN G    +  +F  
Sbjct: 139 YKHRVAPPIVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFRE 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G +D   E N+V+  + +LR+K+ ++      + + R +GY +
Sbjct: 199 VWG-YDYVGETNLVDVCVRRLREKVESEPSRPRLILTVRGVGYKM 242


>gi|319955614|ref|YP_004166881.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
 gi|319424274|gb|ADV51383.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
          Length = 232

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 94/229 (41%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         D   +       +    +      D+  ++  L       +
Sbjct: 4   ILIIEDDPEIIKLLEIHLTDLIYTTAKAMDGKVGLAMALENSYDLILLDLTLPT--MDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR+    P+I ++        +   + G DD + KP   RE+LARV A+ RR   
Sbjct: 62  EICKKIRSQKNTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVLRRTDI 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   +      + +  D R   +  +   L  +E  +L  + +N G+   +T + +
Sbjct: 122 KPIPQKDTSSILAEGLSIDIDKRKVILNDKKIELSPKEFELLVLMASNPGRNYTRTDLLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
            I+G ++    E+ V SHI++LR K+ + +     + +   +GY  + +
Sbjct: 182 MIWG-YNFEGYEHTVNSHINRLRAKIESDMANPIFILTTWGVGYKFNED 229


>gi|229160850|ref|ZP_04288840.1| hypothetical protein bcere0009_16390 [Bacillus cereus R309803]
 gi|228622587|gb|EEK79423.1| hypothetical protein bcere0009_16390 [Bacillus cereus R309803]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++ +         G +++       E+ LQ    ED   +   ++  G    
Sbjct: 4   ILIIEDEAIIAELEKDYLEVAGYTVDI--DYSGEKGLQRVLLEDYDLLILDIMLPGIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQVRLEKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++  +      + +    R   V G    L  +E  +L  +  +  +  +K ++F
Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G+ D   +   V  H+  +R K+  +      +++   +GY  
Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRHKIELDPFDKSYIETIWGVGYRF 227


>gi|227514219|ref|ZP_03944268.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087415|gb|EEI22727.1| response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 245

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   +  +N  +    L +    D+S +   L+      
Sbjct: 19  ILIVDDDKEIVQLLEIYARNEGYEPVTAYNGRDAITKLNTM--PDISLVILDLMMPEMNG 76

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 77  MDVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 136

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    GP+ +  D  +   ++G+   L   E  IL  L ++  +  +   IF
Sbjct: 137 NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGILYLLASHPNRVFSADDIF 196

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 197 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 243


>gi|163840387|ref|YP_001624792.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162953863|gb|ABY23378.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 242

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEK 59
            +++DD   + +    +  +DG   E F   +  + L+   + + D+  ++  L   G  
Sbjct: 23  ILVVDDDEALAEMIGIVLRNDGF--EPFFCADGSQALEVFRAGKPDLVLLDLMLP--GID 78

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ R+IRA S VP++ ++        +   +SG DD V KP    E++ARV A  R  
Sbjct: 79  GIEVCRLIRAESDVPVVMLTAKADTSDVVRGLESGGDDYVPKPFKPAELVARVRARLRPG 138

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +    +   I +   G           L   E  +L  L     +   +  +   ++
Sbjct: 139 DQKTPETLKIADITIDVAGHVVARGETRISLTPLEFDLLVALARKPWQVFTRELLLEQVW 198

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           G +  A +  +V  H+ +LR K+  +    + V + R +GY 
Sbjct: 199 G-YRHAADTRLVNVHVQRLRSKIEIDPEAPEVVLTVRGVGYK 239


>gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
 gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
          Length = 232

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++            +++         +  +    D++ I+  L       +
Sbjct: 3   ILIVEDEDHIRQQLRTAMRRQNYAVDVAKDGREGLYFATEYPYDLAIIDLGLPE--ISGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R +  Q P++ ++     Q  ++  ++G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  TLIKELRENDKQFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRRSA 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S       GP+ + +  +   +      L   E   LEYL  N GK V+KT++   +Y 
Sbjct: 121 GSCKPSMSFGPLTINTTSKVALIGNTEMTLTSYEYNTLEYLAHNAGKVVSKTELTEHLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKK+        + + R  GY  
Sbjct: 181 Q-DFERDSNVIEVFIGRLRKKIDPDNQLKAIVTVRGQGYRF 220


>gi|258510266|ref|YP_003183700.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|50830978|emb|CAG29816.1| putative response regulator transcription factor kdpE
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476992|gb|ACV57311.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 232

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +S E    + S+ R D++ I+  L     + +
Sbjct: 6   ILVVDDERAILKLMQIALKGHGYEVLEASSGEEALVVASTKRPDLAVIDWGLPD--MEGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  SQ+P+I ++   + +  +   D+G DD V KP    E+LAR+    R    
Sbjct: 64  EVLRRLREWSQMPVIMLTVRDAEEDKIAALDAGADDYVVKPFGMGELLARIRVALRHAAR 123

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   + +    R  E+ GE   L   E  +L+ L  N GK V + Q+   ++G
Sbjct: 124 VQDEPVIEAAGLAIHLAERRVELNGEAVKLTPIEYDLLKALAQNAGKVVTQRQLLRHVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             D     + +  +I  LRKKL +       + ++  +GY +
Sbjct: 184 DVDPDNAAHYLRVYIGHLRKKLEDDPSRPWRIVTEPGVGYRL 225


>gi|115523206|ref|YP_780117.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517153|gb|ABJ05137.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 237

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 115/221 (52%), Positives = 153/221 (69%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           MFV+IDDR  V DGY A F  +GV   GF+S +F +WL+ +   D+ AI AFL+G     
Sbjct: 1   MFVVIDDRQGVIDGYAAGFNREGVVSIGFSSTDFRDWLECAVSNDLGAIGAFLLGDCVDR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             LP  IR  S+ P+I +S    L+ T++ F++GVDDVV+ P+H REILAR A I RR  
Sbjct: 61  TSLPLSIRNRSRAPIIALSGLKHLKNTIELFEAGVDDVVHAPVHVREILARTAVIRRRTV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S     T  I VF DGRDPE+ G    LPRRE RILEY ++++GK + KTQ+F++IYGL
Sbjct: 121 GSAEPTPTSVIHVFLDGRDPEIAGRTLALPRRELRILEYFVSHQGKWLTKTQLFNSIYGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD + +ENV+ESH+SKLRKKLR  LG+DP++SKR++GY +D
Sbjct: 181 FDSSFDENVIESHVSKLRKKLRGHLGYDPIESKRYMGYRLD 221


>gi|157376378|ref|YP_001474978.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318752|gb|ABV37850.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 231

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++        D   +++  +  E   +  +  R D + I+  L       + 
Sbjct: 4   LLVEDDIELQTNLKQHLVDANYNIDVADDGEIGLFQGTEYRYDAAIIDVGLP--KLDGIA 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           L + +R      P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR   
Sbjct: 62  LIKTLREQEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++     GP  + +   + +    V  L   E ++ EY M + G+ ++KT +   IY  
Sbjct: 122 KASPVVNNGPFSINTSSLEIKKGDVVITLSGTEYKLFEYFMLHPGEVISKTVLTEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  ++ NV+E  I +LRKKL     F  +++ R  GY +
Sbjct: 182 -DFDLDSNVIEVFIRRLRKKLDPDNSFSLIETLRGQGYRL 220


>gi|104781058|ref|YP_607556.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95110045|emb|CAK14750.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 222

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D   A     G +++         +   S   D+  ++  L   G   L
Sbjct: 3   LLLVEDNVPLADELTATLQRQGYAVDWLADGRDAVYQGQSEPYDLIVLDLGLP--GLPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+    RA +   P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR K
Sbjct: 61  EVLAQWRAANLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRAK 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  R E   + +    +    +G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPRLEAAGLHLDESRQCVSREGVDIQLTAAEFRLLRYFMLHPGQVLSKSHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              +   + NV+E H++ LR+KL    G   ++++R  GY 
Sbjct: 181 DG-ETERDSNVLEVHVNHLRRKL----GRSVIETRRGQGYV 216


>gi|333003432|gb|EGK22976.1| transcriptional regulatory protein baeR [Shigella flexneri K-272]
 gi|333017262|gb|EGK36582.1| transcriptional regulatory protein baeR [Shigella flexneri K-227]
          Length = 240

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLAYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLNLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|332980720|ref|YP_004462161.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698398|gb|AEE95339.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 223

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    +      L      D+  ++  +        
Sbjct: 4   ILVVDDEPKIRELIRKYAIFEGHEIVEAENGMQAIELCRRHNFDIIILDVMMPE--LDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR     P++ +S        +  F+ GVDD V KP   +E++ RV AI +R + 
Sbjct: 62  STCHEIRKICDTPVLMLSARGEEYDRIHGFELGVDDYVVKPFSPKELMLRVDAIMKRTRK 121

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   ++      + +       E+ G+   L  RE  +L Y++ N+   +++ ++   ++
Sbjct: 122 AETESDAFIYERLSINFAAHTVEIDGQRIDLSPRESDLLFYMVRNKNIALSRDKLMQEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   ++  +++H+  LRKKL+       + + R +GY  +
Sbjct: 182 G-YDFYGDDRTLDTHVKLLRKKLKEY--SRLIVTVRGVGYRFE 221


>gi|317046730|ref|YP_004114378.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316948347|gb|ADU67822.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 220

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++ G        G +++   S      L  S +  +  ++  L  +     
Sbjct: 3   LLIVEDDALLQSGLAQALSAQGYAVDCAASAAESNALLRSGQYSLIVLDLGLPDR--DGA 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R     VP++ ++   +L+  +D  D+G DD + KP    E+ AR  A+ RR +
Sbjct: 61  TLLRQWRRDGINVPVLILTARDALEDRVDGLDAGADDYLVKPFALVELQARARALIRRYQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  + G + +    +   ++     +  +E  +L  L+   G+ V +  +   +Y 
Sbjct: 121 GHSDNLLQQGDLTLNLSSQQVLLENLPLEITPKEFALLTRLLMRVGQNVHRETLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             D+    N +E HI  LR+KL    G D + + R +GY ++ 
Sbjct: 181 WNDDPG-SNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLEV 218


>gi|254391205|ref|ZP_05006411.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813637|ref|ZP_06772280.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704898|gb|EDY50710.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326236|gb|EFG07879.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 279

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +                + D   ++  L       L 
Sbjct: 56  LVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEAREFQPDAVVLDVALPD--MDGLT 113

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L  R+ R   +VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 114 LLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 173

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++     +    G + +  D R+    G+   L   E  +L YLM N  + ++K QI   
Sbjct: 174 ASAARGESLLAVGDLTLDEDSREVSRGGQAIHLTATEFELLRYLMRNPRRVLSKAQILDR 233

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE ++S LRKK+ +      + ++R  GY I
Sbjct: 234 VW-SYDFGGQANVVELYVSYLRKKI-DAGRAPMIHTRRGAGYLI 275


>gi|86606539|ref|YP_475302.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
 gi|86555081|gb|ABD00039.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
          Length = 251

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G  +         + L      D+  ++  L       L
Sbjct: 4   ILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQV--DGL 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     S++P++ ++     Q  ++ F++G DD + KP   +E+L RV A+ RR
Sbjct: 62  TVCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRR 121

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP+ +  +  +    G+   L   E  +L  LM   G+ V+ ++
Sbjct: 122 ADRIPQTAKHGEILTYGPLTLVPERFEAVWFGKTIKLTHLEFDLLHCLMQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G ++   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILQEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230


>gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
 gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
          Length = 227

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   E   +         ++  D+  ++  L       L
Sbjct: 5   ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFLNSSWDLILLDVMLPN--ISGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R  + V P+I ++   S+   +   D G  D + KP    E+LAR+ A  R   
Sbjct: 63  EVLRRVRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISH 122

Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +    R+ +    V  L  RE  +L +LM +  + + + QI + 
Sbjct: 123 AIKEEEYSSFHIADLFLDEKTREVKRGNNVAELTPREFDLLHFLMKHENQVLNREQIVTN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G FD   + NVV+ +I  LRKK+   +    + + R +GY +
Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKIDCNVDVPLIHTVRGVGYVL 225


>gi|222084784|ref|YP_002543313.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium radiobacter K84]
 gi|221722232|gb|ACM25388.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium radiobacter K84]
          Length = 211

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 8/213 (3%)

Query: 14  GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV 73
                   +G  ++     +  E        D+  ++  L   G   +EL R +R   + 
Sbjct: 1   MLRYNLEAEGFEVDTILRGDEAELRLQERIPDLLILDWMLP--GVSGIELCRRLRMRPET 58

Query: 74  ---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAET 128
              P+I ++        +    +G DD V KP    E++ARV A+ RR +    +     
Sbjct: 59  ERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELMARVKAMLRRARPEVLSTVLRC 118

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G I +  +      +     L   E R+LE+LMA+  +  +++Q+   ++G  D  V+E 
Sbjct: 119 GDIELDRETHRVHRKSREVRLGPTEFRLLEFLMASPSRVFSRSQLLDGVWG-HDIYVDER 177

Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            V+ H+ +LRK L      D + + R  GYS++
Sbjct: 178 TVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 210


>gi|149910657|ref|ZP_01899294.1| DNA-binding response regulator [Moritella sp. PE36]
 gi|149806284|gb|EDM66260.1| DNA-binding response regulator [Moritella sp. PE36]
          Length = 234

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 93/229 (40%), Gaps = 11/229 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D+  + +         G  +   ++ +            +  ++  L       L+
Sbjct: 6   LVVEDQQDIANLIRINLEMIGKKVTCCHNAKDAFQQLRDNVFQLILLDLNLPD--MDGLD 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR +   VP++ ++        +   ++G DD + KP    E+ ARV A+ RR  V
Sbjct: 64  ICKKIRINDAIVPIMMLTARTEELDRVQGLEAGADDYLAKPFSVLELQARVKALLRRSNV 123

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    + +   + +           ++  L   E  +L +L  + G+  ++ Q+ +
Sbjct: 124 QAIKNVEPEQIKIADLVIDQATHSVYRNKQLITLTSTEFSLLAFLAKSPGRVYSREQLLA 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
            ++   ++  E + V SH+++LR K+         + +   +GY ++ +
Sbjct: 184 EVWDYHNDCYE-HTVNSHMNRLRNKIEPNPAKPTYIKTVWGVGYKLEVS 231


>gi|33866776|ref|NP_898335.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639377|emb|CAE08761.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 248

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++           L  +   D+  ++  +        
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFENTAPDLVVLDVMMP--KLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   +R+ ++ R      E   L   E  +LE L++  G+   + +I 
Sbjct: 129 ESVAGIPNSGVIQVSDLRIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFNRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|258515908|ref|YP_003192130.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779613|gb|ACV63507.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 228

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G   +                 DV  ++  L   G+   
Sbjct: 4   ILIIEDDLHIAELERDYLQLNGFKADIVQDGVQGLKKALPGNYDVIIVDLMLP--GKDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR    VP++ +S        +   + G DD + KP    E++AR+ +  RR + 
Sbjct: 62  EIIREIREKLDVPVVVVSAKDEDVNKIRGLEYGADDYLTKPFSPGELVARIKSHIRRYER 121

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V +       + + +      + G+   +  RE  +L +L +N G   +K  I  
Sbjct: 122 LKGNHVPSEVIIHRGLEINTASHRVYLNGQQVQMTTREYELLLFLASNPGIVFSKEHILV 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +I+G  D   +   V  HI K+RKK+  +    + +++    GY  +
Sbjct: 182 SIWG-DDYFGDTATVAVHIQKIRKKIEKDPSNPEFIETLWGTGYRFN 227


>gi|229169399|ref|ZP_04297109.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
 gi|228614162|gb|EEK71277.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGE 58
            +L++D   + +        D + +  F        E  LQ + +ED   I   ++    
Sbjct: 4   ILLVEDEISIAE-----LQRDYLEISDFQVDVEYSGEIGLQMALQEDYDLIILDIMLPKM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R
Sbjct: 59  NGFEICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118

Query: 119 LKV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +          +      I +    R   +  E      +E  +L + + +  + + K 
Sbjct: 119 YERLSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
           Q+F  I+GL + A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 179 QLFERIWGL-ESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229


>gi|227498000|ref|ZP_03928176.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226832590|gb|EEH64973.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 227

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +    E F   +  + L +    +   +   L+  G   +
Sbjct: 5   ILVVDDDTALAEMIGIMLESEHY--EPFFCADGAQALATFREVNPHLVLLDLMLPGLDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IRA S VP+I ++     Q  +   ++G DD V KP   +E+LARV    RR   
Sbjct: 63  EICRLIRAESDVPVIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVRTRLRRGTE 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        G + +   G      G    L   E  +L  L     K   + ++ + ++G
Sbjct: 123 AGAVEHVRVGDVDIDVLGHRVTRDGAALALTPLEFDLLLTLARTPSKAFTREELLARVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
               A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 -HQHAADTRLVNVHVQRLRSKVEKDPEHPTIVVTVRGVGYR 222


>gi|218248106|ref|YP_002373477.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060567|ref|YP_003138455.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218168584|gb|ACK67321.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590733|gb|ACV01620.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +    +   +G  ++  ++      L  +   D+  ++  L  K    +
Sbjct: 3   ILLVDDEPELTEPLTHVLSHEGYEVDVTDNGNIGYELAVNNSYDLLILDWMLPNKP--GI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+     P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  EICQALRSQGNTTPVLFLTAKDTLNDRVLGLDAGADDYLVKPFELRELLARVRALLRRSP 120

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + + +   + +  D +    QG    L  +E ++L Y M N G+ +   QI+  
Sbjct: 121 HLDPTPSTKLKIADLELDRDNQVAYRQGRGVNLSDKEVQLLSYFMENPGQLLTHEQIYQQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++    E    NVV + I  LR+K+  +     + +    GY  
Sbjct: 181 LWDQT-EQPNSNVVAALIRLLRRKIEAEGELPLIHTVYGKGYRF 223


>gi|51209875|ref|YP_063539.1| Ycf27 [Gracilaria tenuistipitata var. liui]
 gi|50657629|gb|AAT79614.1| ompR transcriptional regulator [Gracilaria tenuistipitata var.
           liui]
          Length = 241

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  +   ++ + EE L    RE  + +   ++       
Sbjct: 8   ILIVDDETSIRTILETRLSMIGYDV--ISASDGEEGLHIFRREYPNLVILDVMMPKLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + IR  S VP+I ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 66  GVCQEIRKESDVPIIMLTALGDVSDRITGLELGADDYVIKPFSPKELEARIRCVLRRVYK 125

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S+     G +++ ++ R    + E   L   E  +LE L++  G+  +++ I
Sbjct: 126 ININSSIPSSGILNMGFLKIDTNKRQVYKKNERVRLTGMEFSLLELLVSKAGEAFSRSSI 185

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
              ++G   +  V+  VV+ HIS+LR KL +     D + + R  GY
Sbjct: 186 LQEVWGYKPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGY 232


>gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 245

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + D        +G  +    +      +    R D   ++  L       L 
Sbjct: 23  LVVDDESALADLLSMALRYEGWEVRTAGNGAEALRITRELRPDAVLLDIMLPD--MDGLT 80

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R    +VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 81  LLGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGA 140

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  R+E     G + +  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 141 AAARSESLLTVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 201 W-SYDFGGQANVVELYISYLRRKI-DAGRSPMIHTRRGAGYLI 241


>gi|229182901|ref|ZP_04310134.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228600525|gb|EEK58112.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 229

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +   D   ++   + E   +L      DV  ++  +        
Sbjct: 9   LLVVEDNASLLESIVQIL-HDEFEVDTALNGEEGLFLALQNIYDVILLDVMMPE--MDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|228474789|ref|ZP_04059520.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|314935741|ref|ZP_07843093.1| DNA-binding response regulator [Staphylococcus hominis subsp.
           hominis C80]
 gi|228271452|gb|EEK12820.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|313656306|gb|EFS20046.1| DNA-binding response regulator [Staphylococcus hominis subsp.
           hominis C80]
          Length = 224

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 104/226 (46%), Gaps = 6/226 (2%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +++DD   +          D +     +S E      +  R D++ ++  +   G 
Sbjct: 1   MIKCLIVDDDPKLLHYVSKHLEADHIKTVTHSSGEQALKYLNHHRVDIAVVDIMM--TGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              EL ++++   Q+P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR
Sbjct: 59  DGFELCQLLKDRYQLPVIMLTARDALSDKERAFVSGTDDYVTKPFEIKELLFRIRAVLRR 118

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++ + N+ E G + +  +  +  V  +   LP +E ++L  L  +  +   +  I   I
Sbjct: 119 YQINTQNKIEIGNVILNDEFMEVSVASKKMNLPTKEFQLLFLLCTHPRQIYTRESIIEKI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G FD   +E  V+ HI +LR +L+       + + R  GY ++ +
Sbjct: 179 WG-FDYTGDERTVDVHIKRLRTRLKKLEATIEIQTVRGQGYKVNKD 223


>gi|226349472|ref|YP_002776586.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
 gi|226245387|dbj|BAH55734.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 253

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 17/232 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +    +   +    +      L      DV  ++  L   G   +E
Sbjct: 21  LVVDDERPLAAVVASYLEREHFEVAVAYNGVDALTLAREIDPDVVVLDLGLP--GMDGIE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR + +
Sbjct: 79  VCRELRTFSDAYVVMLTARSAEMDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRKA 138

Query: 123 -------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G +R+   GR+  +  +   L R E  +L  L +  G   +
Sbjct: 139 PVYEIPAPEPGAEAPPRVFGALRIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAFS 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + Q+  A++G       E++V+ H+  LR+KL  +      V + R +GY +
Sbjct: 199 RRQLIEAVWGES-WVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGYRM 249


>gi|163815933|ref|ZP_02207303.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759]
 gi|158448743|gb|EDP25738.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759]
          Length = 228

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++  G        G  +E   S +  +        D+  ++  L     + L
Sbjct: 4   ILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEADGCLEHG-FDLILLDRNLPD--GRGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R +R  ++VP+I ++   +    ++ F +G DD + KP     +  R+ A+ RR + 
Sbjct: 61  DYCRELRKSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVLRRSEN 120

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +       R   G + V  +     +  E   L   E RILE L+ N+G+ + +  I   
Sbjct: 121 APDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I+   +  V+EN +  HI +LR+K+    G  + V +   +GY+ 
Sbjct: 181 IWDDNENYVDENTLNVHIRRLRQKIEKDAGNPEYVITVFGIGYTF 225


>gi|150019834|ref|YP_001312088.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149906299|gb|ABR37132.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 230

 Score =  223 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G       S +    +      D   ++  +       L
Sbjct: 5   ILVIDDDKDIVKLITKSLSYEGFGTISAYSGKEALCVLKENNIDFIILDIMMPD--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR     P++ +S        +   + G DD + KP   +E+ +R+ A +R++  
Sbjct: 63  DVCRSIRKSYNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELNSRIRANFRKVDR 122

Query: 120 ------KVSNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 ++S NR +   P+ +     +  +  +   L  +E +IL  LM N    + + +
Sbjct: 123 LFKEWNELSPNREKIDSPLILNDKTFEAFLNNKKLNLSTKEFQILSMLMHNPNNVLTRER 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+  ++G  DE  E N V  HI  +RKKL     +D + +   +GY 
Sbjct: 183 IYEYVWG--DEYGELNTVTVHIKNIRKKLG--PEYDFIKTIWGIGYK 225


>gi|315647964|ref|ZP_07901065.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315276610|gb|EFU39953.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 236

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       DG S    + +   + + +   +  +     L        
Sbjct: 12  ILLVEDDKTIASGLEYSLQQDGFSTVLCHDVASAQRVLAEDIDQFALCLFDLQLPDGSGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL ++++    +P+I ++        +   D G DD + KP   RE+L+R+ ++ RR + 
Sbjct: 72  ELCKLVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYQK 131

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   IR+ +       +G   PL   E R+L     + G+ + + Q+   I+
Sbjct: 132 PSHTRAIIDIDHIRINTLEGKVHKKGTEIPLTALEYRLLLIFGNHIGQVLTRNQLLEQIW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +  + V +N +  +I +LR+KL +  G    + + R LGY +
Sbjct: 192 DVAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYKV 234


>gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 245

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + D        +G  +           +    R D   ++  L       L 
Sbjct: 23  LVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRITRELRPDAVVLDVMLPD--MDGLT 80

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    +P++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 81  VLGRLRRELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGA 140

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  R+E     G + +  D  +    G    L   E  +L YLM N  + ++K QI   +
Sbjct: 141 AAARSESVLAVGDLILDEDSHEVSRGGREIHLTATEFELLRYLMRNPRRVLSKAQILDRV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 201 W-SYDFGGQANVVELYISYLRRKI-DAGRSPMIHTRRGAGYLI 241


>gi|241114102|ref|YP_002973577.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
 gi|240868675|gb|ACS66333.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
          Length = 228

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +   +       + G  ++   +      L  +   D+  ++  L     +  
Sbjct: 3   LLVVEDESKTGEYLQQGLSEAGFVVDLARNGMDGRHLAMTGDYDLLILDVMLPD--LEGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R A   VP++ ++   S+   +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILHALRSAELAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRSLLRRGS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   R +   + +    R     G+   L  +E  +LE L    G+ + ++ I S ++
Sbjct: 121 APSLAERIQVADLVLDLTRRRASRGGQRIALTSKEFSLLELLARRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDNFEPKLIHTVRGMGYVLE 222


>gi|170076628|ref|YP_001733267.1| two-component response regulator; transcriptional regulatory
           protein [Synechococcus sp. PCC 7002]
 gi|169887490|gb|ACB01198.1| two-component response regulator; transcriptional regulatory
           protein [Synechococcus sp. PCC 7002]
          Length = 223

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +     +    +G  +   ++      L      D+   +  +   G   L
Sbjct: 5   ILLAEDDQNLAQFVASELRLEGYLITVAHNGIDSLNLIRENTYDLLIFDWLMP--GLSGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +R+   + P++ ++    +   +   ++G DD V KP    E+LARV A  RR +
Sbjct: 63  DLCLRLRSSGIETPILLLTAKDEISDRVSGLNAGADDYVTKPFSIEELLARVNAHLRRAR 122

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               ++ E   + +    R+     ++  L  +E  +LE L+ +  + + + QI   ++G
Sbjct: 123 REVVDQLEFEDLSLNGITREVYRDRQLIQLTAKEFDLLELLLRHPRQVLTREQILEKVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   E NV+E +I  LR KL        + + R +GY +
Sbjct: 183 -YDFMGESNVIEVYIRALRLKLEATNPKRLIHTVRSVGYVL 222


>gi|161486796|ref|NP_805595.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161501946|ref|NP_455593.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|213021734|ref|ZP_03336181.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213162819|ref|ZP_03348529.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428532|ref|ZP_03361282.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213610054|ref|ZP_03369880.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213857941|ref|ZP_03384912.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289811681|ref|ZP_06542310.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
 gi|289824356|ref|ZP_06543949.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 226

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +       + G  ++          L       +  ++  L   G    
Sbjct: 3   ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q P+I ++   S++  +   ++G +D + KP    E+LARV A  R+   
Sbjct: 61  QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     + + +  +     G+   L R+E  +L  L +  G+ V +T I S ++G+ 
Sbjct: 121 VFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + + +GY +
Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVQGMGYRL 218


>gi|284037439|ref|YP_003387369.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816732|gb|ADB38570.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 230

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         +DG + E     E     Q + +  V  +   +   G    
Sbjct: 4   ILIIEDDRRIAQNISRTLQEDGYATEV--VYEGINGRQMALQPGVDLLILDINLPGINGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA    +P+I ++    ++  ++    G DD + KP   RE++ARV A  RR  
Sbjct: 62  EVCRSVRAEKPNLPIIMLTALGEIEDKVEGLGLGADDYLVKPFDIRELIARVEACLRRST 121

Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +                + V S  R+ +       L  RE  +LEYL+ NRG+ +AK  I
Sbjct: 122 LLEEMTAEPEKVWRVANLTVDSASREVKRGETTIDLTAREFALLEYLIRNRGRVMAKLDI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++ L +     NVVE +I+ LRKK+        + ++  +GY +
Sbjct: 182 TEQVWNL-NFDPTTNVVEVYINYLRKKIDRDFEPKLIHTRPGMGYVL 227


>gi|261342454|ref|ZP_05970312.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315092|gb|EFC54030.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
          Length = 219

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG        G S++ F   +  +    SA  D   ++  L       L
Sbjct: 3   ILLVEDDKLIGDGIKTGLSKLGFSVDWFTDGKTGQAALYSAPYDAVVLDLTLPE--IDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R  R   +  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EMLRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRSH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + +        + G+   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQTRSELRHGKVMLDPVSLVATLDGDTLVLKPKEFALLELLMRNAGRVLPRKHIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G + + +   +GY++
Sbjct: 181 -WDDDVSSNAVEVHVHHLRRKL----GSEFIRTVHGIGYTL 216


>gi|311112536|ref|YP_003983758.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
 gi|310944030|gb|ADP40324.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
          Length = 279

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++K+         G  ++          +    R DV  ++  +   G   LE
Sbjct: 58  LVVDDEEMLKELVSMGLKMIGWEVQSAGDGPAALAIARDWRPDVLVLDIMMP--GFDGLE 115

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IR  + +VP + ++   S+   ++   +G DD V KP    E++ R+  + +R  V
Sbjct: 116 LLDRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSGV 175

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G + +  D R+    GE   L   +  +L YLM N  + V+K+QI   ++
Sbjct: 176 AAIDDAELVVGDLVLNQDTREVTRGGEPIALTATQFDLLRYLMENAKRVVSKSQILDNVW 235

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+   +G +P + + R  GY I
Sbjct: 236 N-YDFGGQANIVELYISYLRKKID--VGREPMIHTVRGAGYVI 275


>gi|228993566|ref|ZP_04153474.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228766157|gb|EEM14803.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 229

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F ++   +    + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLNEQYKV--LEARDGKEALSLFEEEEVHLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  SQVP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRIL 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +     ++      I V    R   ++G    L   E  IL Y M N+   + + Q+ 
Sbjct: 123 TSKSPSNEDDTLSIHGICVHFPSRIVTIEGVDINLTHTEFEILTYFMQNQWIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL +K     + +   +GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGDK--AKYITTVVRMGYKFEGN 228


>gi|224438071|ref|ZP_03659010.1| phosphate regulon transcriptinal regulatory protein PhoB, putative
           [Helicobacter cinaedi CCUG 18818]
 gi|313144515|ref|ZP_07806708.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129546|gb|EFR47163.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 222

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           M  +++D   +    +       +  +GF+   EF E + +        ++  L    E 
Sbjct: 1   MIFILEDDEGILSLVLYALNSANLKAKGFSLPSEFWEAM-AKESPSCVVLDVMLPQ--ED 57

Query: 60  VLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            L +   +R +     +P+I ++   S    +   DSG DD + KP    E++AR+ A+ 
Sbjct: 58  GLSVLHKMRQNHKSKNIPVIMLTALGSEFDKIKGLDSGADDYLTKPFSALELIARIKALL 117

Query: 117 RRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR    N+     G ++         + GE   L  +E  +L  LM++  +  ++ ++  
Sbjct: 118 RRSHTQNDCEMSYGDLKYSKTIHSVSIGGESLHLTLKEFELLGLLMSSTNRVFSREELLE 177

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            I+G          ++ HI+ LR KL        + + R +GY  + N
Sbjct: 178 IIWGYN--ISGTRTIDIHINTLRSKLGKYG--KHIKTIRGVGYQFNTN 221


>gi|24113461|ref|NP_707971.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a
           str. 301]
 gi|30063524|ref|NP_837695.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a
           str. 2457T]
 gi|110806049|ref|YP_689569.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 5
           str. 8401]
 gi|24052492|gb|AAN43678.1| transcriptional response regulatory protein (sensor BaeS) [Shigella
           flexneri 2a str. 301]
 gi|30041777|gb|AAP17504.1| transcriptional response regulatory protein (sensor BaeS) [Shigella
           flexneri 2a str. 2457T]
 gi|110615597|gb|ABF04264.1| transcriptional response regulatory protein [Shigella flexneri 5
           str. 8401]
 gi|281601525|gb|ADA74509.1| Transcriptional response regulatory protein [Shigella flexneri
           2002017]
 gi|313649874|gb|EFS14294.1| transcriptional regulatory protein baeR [Shigella flexneri 2a str.
           2457T]
 gi|332755913|gb|EGJ86267.1| transcriptional regulatory protein baeR [Shigella flexneri K-671]
 gi|332756855|gb|EGJ87200.1| transcriptional regulatory protein baeR [Shigella flexneri 2747-71]
 gi|332766432|gb|EGJ96641.1| response regulator [Shigella flexneri 2930-71]
 gi|333002115|gb|EGK21680.1| transcriptional regulatory protein baeR [Shigella flexneri VA-6]
 gi|333002508|gb|EGK22070.1| transcriptional regulatory protein baeR [Shigella flexneri K-218]
 gi|333017079|gb|EGK36400.1| transcriptional regulatory protein baeR [Shigella flexneri K-304]
          Length = 240

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLAYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|548535|sp|P36556|BASR_SALTY RecName: Full=Transcriptional regulatory protein BasR
 gi|295211|gb|AAA72365.1| PmrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 222

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++ + +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +          G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|227548509|ref|ZP_03978558.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079417|gb|EEI17380.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 268

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 44  LVVDDERALAQMVDSYLIRVGFDTRQAHTGIQAVDEARRFSPDVVVLDLGLPE--LDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 265


>gi|84683692|ref|ZP_01011595.1| two-component response regulator [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84668435|gb|EAQ14902.1| two-component response regulator [Rhodobacterales bacterium
           HTCC2654]
          Length = 223

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D     F ++G S++                 DV  ++  L       L
Sbjct: 3   ILVVEDDPTTADFIARGFSEEGHSVDRLADGRSALGQAMQGSYDVLVVDRMLPE--LDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + +RA     P I ++    ++  +   ++G DD + KP    E+ ARVAA+ RR  
Sbjct: 61  SLVKALRAARVATPAIFLTSVGGVEDRIAGLEAGGDDYLVKPFAFGELSARVAALTRRPP 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+      + G + +    R+    G    L  RE  +LE+L+  +G+   +T +   ++
Sbjct: 121 LQAEETTLKAGDLEMDLVRREVRRAGRPIDLLPREFALLEHLLRRKGRVQTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 181 DIH-FDPGTNVVETHISRLRAKVDKPFDHELIRTVRGAGYRID 222


>gi|308173799|ref|YP_003920504.1| yvrH [Bacillus amyloliquefaciens DSM 7]
 gi|307606663|emb|CBI43034.1| yvrH [Bacillus amyloliquefaciens DSM 7]
          Length = 235

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   + +    +   +G+  +   ++             D+  ++  L     +  
Sbjct: 9   LIIDDEREILELIKTVLIREGIDRVITASTARDGLAQFHQENPDLVILDIMLPD--GEGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR  S VP+I +S        +     G DD + KP   +++  RV A  RR   
Sbjct: 67  DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKKVAYRVKAQLRRSSY 126

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++   + GP  +     +    G    L  +E  ++ Y + +  + ++K  ++ A
Sbjct: 127 LQPSQTDTLIKAGPFELHQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQA 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G  D    +N V  HI +LR+K+       D + + + LGY  
Sbjct: 187 VWGE-DFFGSDNTVMVHIRRLREKIETIPSTPDFLVTVKGLGYKF 230


>gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 239

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   +S +  E L+   + +  A+   L+  G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEV--VHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 231


>gi|328885480|emb|CCA58719.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 237

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 27/238 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--------REDVSAIEAFL 53
            +L++D   V     A+    G ++    +   EE LQ+             V  ++  L
Sbjct: 3   LLLVEDDDHVAAALSAILARHGFTVTHARN--GEEALQAVLPTAQGERPSYGVILLDLGL 60

Query: 54  IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
             +     ++   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ 
Sbjct: 61  PDQ--DGYQVCGRIRKLTTTPVIMVTARGDVRSRIHGLNLGADDYVVKPYDPGELLARIH 118

Query: 114 AIYRRLKVSNN-----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
           A+ RR   +             +   GP+ +    R   V GE  PL R+E  +L  L  
Sbjct: 119 AVSRRHAGTEETAATGTATDGTQLRLGPVTIELPTRRVSVDGESVPLTRKEFDLLALLAQ 178

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             G    + QI S ++    E      +E H++ LR KLR       +++ R +GY +
Sbjct: 179 RPGVVFRREQIISEVWRTSWEGTG-RTLEVHVASLRSKLRMPA---LIETVRGVGYRL 232


>gi|168179677|ref|ZP_02614341.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182669403|gb|EDT81379.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 221

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIVLDVMLP--KIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +  IIR  S VP+I ++     +  +  F+  VDD + KP     ++ RV A+ RR   
Sbjct: 63  VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEIIIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +  V+++HI  LR+KL      D + + R +GY I+
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIRTIRGVGYKIE 220


>gi|117924789|ref|YP_865406.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608545|gb|ABK44000.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 236

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 102/227 (44%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++++D   + +        +G +     + E    + +  R  D+  ++  L   G   
Sbjct: 5   ILIVEDERDLANTLEYSLKQEGFNARVALTGEEGMRIATVERWPDLVLLDLMLP--GVSG 62

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +E+ R +R       +P+I ++        +  F++G DD V KP   RE++ R+ AI R
Sbjct: 63  IEVCRRMREEDGTRTMPVIMLTARGEEIDKVMGFEAGADDYVVKPFKVRELVLRIRAILR 122

Query: 118 RLKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R++            G ++V  +G    V GE   L   E ++L   ++ +G+   +  +
Sbjct: 123 RVQPEQAESAALVTFGRLKVDLEGHRVWVDGEESSLTAMEFKLLTTFLSRKGRVQNRDTL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G+ +  V+   V++H+ +LR+KL        +++ R +GY  
Sbjct: 183 LNDVWGV-NAFVQTRTVDAHVKRLREKLGPAG--KYMETIRGVGYRF 226


>gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 225

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       +    +  F +   +E L+    + +S +   ++      +
Sbjct: 5   ILVVDDNDEICNIVTLYLENSSFKV--FEAKNGKEALEFLKNDKISLMILDIMMPEMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E+ + I      P+I +S   S++  ++    G DD + KP    E++ARV A+ RR   
Sbjct: 63  EVLKTIGNDRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALLRRNNH 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            SNN  + G +    D R     G V  L  +E  +L   M   GK   K +I+  ++  
Sbjct: 123 RSNNIIKVGNLSWDKDKRLIYKNGNVLNLRSKEYELLTMFMTTPGKVFTKQEIYENLWQS 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +    ++N +  HIS LR+K+ +       + + R LGY +
Sbjct: 183 YYFE-DDNTIMVHISNLREKIEDNPRSPTKIITIRGLGYML 222


>gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 246

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 104/234 (44%), Gaps = 19/234 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++   A     G  +      +     Q+ A  D++ ++  L         
Sbjct: 12  LVVDDEPSIRELLSASLRFAGFDVLSAADGKEALDHQAGAHLDLAVLDVMLPD--MDGFT 69

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R   +++P++ ++    ++  +     G DD + KP    E++AR+ A+ RR   
Sbjct: 70  ILRKLRERDAELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRRTHP 129

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+        G + +  +  D    G++  L   E ++L YL+ N  + V+K QI   ++
Sbjct: 130 SDADAAVLTYGDLELNEETYDVRRAGQIVELSPTEFKLLRYLLINAERVVSKMQILDHVW 189

Query: 179 GLFDEAVEENVVESHISKLRKKL------------RNKLGFDPVDSKRFLGYSI 220
             ++   E ++VES+IS LR+K+              K     + +KR +GY +
Sbjct: 190 D-YNWNGEVSIVESYISYLRRKIDSAEALGITDPEEAKAIVPLIHTKRGIGYVL 242


>gi|227529760|ref|ZP_03959809.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350244|gb|EEJ40535.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   +  ++  E    L ++    +  ++  +       
Sbjct: 3   ILVVDDDKEIVQLLEIYIRNEGYEPVTAYDGKEALTKLNTNPDIGLIILDLMMPE--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  S +P++ +S   +    +    SG DD V KP +  E++ARV ++ RR +
Sbjct: 61  MQVIKQVRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRSQ 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 + +    GP+ +  D  +   ++G+   L   E  IL  L ++  +  +   IF
Sbjct: 121 GEVTNDTPDILNVGPLTINKDSHEVKTIKGDTIQLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ++
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVLGVGYKVE 227


>gi|212212388|ref|YP_002303324.1| QseB [Coxiella burnetii CbuG_Q212]
 gi|212010798|gb|ACJ18179.1| QseB [Coxiella burnetii CbuG_Q212]
          Length = 232

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + DG  A     G +++     +    + SS  E    I   L       L+
Sbjct: 13  LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 72

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + IR  +   P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR K 
Sbjct: 73  VLKTIREKNDPTPVVILTARDTVDDRIKGLDTGSDDYMTKPFDLEELCARMRAMQRRSKE 132

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G I +        ++ +   + RRE  +L+ L+ N G+ +++ Q+   +YG 
Sbjct: 133 RAKPIISHGDITLDPASHVVTLKKKEVMVSRREFALLQKLLENAGRVISREQLNQTLYG- 191

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E ++ N +E HI  LRK+     G   + + R +GY ++
Sbjct: 192 WGENIDSNALEVHIHNLRKR----FGAKLIRTIRGVGYMVE 228


>gi|170783046|ref|YP_001711380.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157616|emb|CAQ02814.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +    L   +G  ++          + +  ++    I   L+  G    
Sbjct: 4   IMLVEDEASLSEPLAFLLQREGYEVDVVEDGPA--AVAAFEKDGTDLILLDLMLPGLPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCREIRTRSAVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRRVE 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +    N  E G +R+  +    EV G    +P +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 VDDEPLNVLEVGSVRMDVERHTVEVDGREIAMPLKEFELLELLLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ HI ++R K+ R       + + R LGY  +
Sbjct: 182 WG-SDYFGDTKTLDVHIKRIRSKIEREPSDPVLLVTVRGLGYRFE 225


>gi|217388361|ref|YP_002333390.1| regulatory protein VanR [Enterococcus faecalis]
 gi|227517498|ref|ZP_03947547.1| response regulator [Enterococcus faecalis TX0104]
 gi|260559887|ref|ZP_05832066.1| regulatory protein vanRB [Enterococcus faecium C68]
 gi|11345398|gb|AAG34686.1|AF310956_1 response regulator [Enterococcus faecium]
 gi|55709826|gb|AAV58811.1| vanRB [Clostridium sp. CCRI-9842]
 gi|61743147|gb|AAX55325.1| VanRB [Clostridium hathewayi]
 gi|61743150|gb|AAX55327.1| VanRB [Clostridium hathewayi]
 gi|61743153|gb|AAX55329.1| VanRB [Clostridium hathewayi]
 gi|80973253|gb|ABB53358.1| VanRB [Clostridium sp. MLG245]
 gi|80973264|gb|ABB53368.1| VanRB [Enterococcus faecium]
 gi|216409903|dbj|BAH02338.1| vanR [Enterococcus faecalis]
 gi|227075103|gb|EEI13066.1| response regulator [Enterococcus faecalis TX0104]
 gi|229463102|gb|ACQ66100.1| response regulator [Enterococcus faecium]
 gi|260074111|gb|EEW62434.1| regulatory protein vanRB [Enterococcus faecium C68]
          Length = 219

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   A   + G  ++                  +  ++  L   G    
Sbjct: 5   ILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLP--GMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   + + V +HI  LR KL      + + + R +GY ++ +
Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEES 219


>gi|325122777|gb|ADY82300.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acinetobacter calcoaceticus PHEA-2]
          Length = 223

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 97/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L        
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPD--IDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSRIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDVVGHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 219


>gi|239929738|ref|ZP_04686691.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438063|ref|ZP_06577453.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340958|gb|EFE67914.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 232

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 101/234 (43%), Gaps = 27/234 (11%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++        DG ++    +G + LE       S R D++ ++  +   G 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAF----RSDRPDIALLDVMVP--GL 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 62  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121

Query: 119 LKVSNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
              +N                 G + + + G +    GE   L   E R+L    +  G 
Sbjct: 122 FGRANGGRDESAAAAGAGVLAFGELEIDTGGMEVRRAGEPVALTPTEMRLLLEFSSAPGT 181

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 182 VLSRDKLLERVW-EYGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 230


>gi|237736365|ref|ZP_04566846.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
 gi|229421407|gb|EEO36454.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
          Length = 219

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++         +G  ++   + + EE ++         +   ++       
Sbjct: 4   ILVIDDEWKIRKLIKDYLVREGYIVD--EAGDGEEGIEKFFSNIYDIVILDIMMPKIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  SQVP+I ++        L  FD   D+ + KP + + ++A+V A+ RR   
Sbjct: 62  SVCRKIREESQVPIIMLTARADESDQLFGFDLETDEYMVKPFNPKLLVAKVKALLRRDGK 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       G + +    R+  ++  V  L  +E  +L + + N+G  +++ +I ++++G
Sbjct: 122 IIDKAPMVFGDLAIDGIKREVRLKDVVLDLTPKEYDLLYFFVENKGIALSREKILNSVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +   V++HI +LRKK+ +K     V + R  GY  +
Sbjct: 182 -WDYFGDSRTVDTHIKRLRKKIGDK----YVQTVRGFGYKFE 218


>gi|228941999|ref|ZP_04104542.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974930|ref|ZP_04135491.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981523|ref|ZP_04141820.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228778202|gb|EEM26472.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228784783|gb|EEM32801.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817668|gb|EEM63750.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942601|gb|AEA18497.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G +D V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGANDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHDIHVHFPSRTVTVNRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|8885859|gb|AAF80268.1|AF155506_2 ArmR [Pseudomonas sp. JR1]
          Length = 227

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 111/220 (50%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D  L+  G +A     G+++E   +      +   A  DV  ++  L    E  L+
Sbjct: 4   LVCEDDELIASGIVAGLTAQGLTVEHVATASSARAMLKVAEFDVMVLDLGLPD--EDGLK 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L + +R +  ++P++ ++   S+   +D   +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLQQLRHSGLEIPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S N  E G +      R+  + G+   L RRE+ +L+ L+ NRG+ ++  Q+  ++YG 
Sbjct: 122 RSVNLIEHGRLTYDPSSRETMLGGQPVDLSRREQSLLQALLHNRGRVLSTEQLKDSVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE +E N +  HI  LR+KL    G   V++ R LGY +
Sbjct: 182 NDE-LESNALNVHIHHLRRKL----GNGIVETVRGLGYRL 216


>gi|229060825|ref|ZP_04198180.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228718472|gb|EEL70104.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 225

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGILEKENIHLAIVDIMMPF--IDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|229120301|ref|ZP_04249551.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663111|gb|EEL18701.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 242

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMP--KMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 138

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 139 HA-QIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 236


>gi|169349708|ref|ZP_02866646.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
 gi|169293783|gb|EDS75916.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            +++DD   + D       ++   +  F     ++ L+S  +   D++ ++  +      
Sbjct: 5   ILVVDDEQSIADLIELYLQNENYHI--FKYYCGKDALESLQKNHYDLAILDVMMPD--LD 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              L + IR H   P+I ++   +    ++    G DD + KP +  E+ ARV    RR 
Sbjct: 61  GFSLLKKIRKHYYFPVIMLTAKSNDLDKINGLTLGADDYLTKPFNPLELAARVKTQLRRY 120

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +  +   + + +      +  +   L   E  IL YL + RG  V   +
Sbjct: 121 LRYNQNPSTNQHIYDFNGLVINNHTHKCTLYDQPLNLTPIEFSILWYLCSKRGNVVTSEE 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +F A++         N V +H+++LR+K+  N      + +   +GY+I+
Sbjct: 181 LFEAVWQEK-YLDNNNTVMAHVARLREKMHENARKPKFIKTVWGVGYTIE 229


>gi|117618787|ref|YP_857713.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560194|gb|ABK37142.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 106/219 (48%), Gaps = 9/219 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ DG +      G +++     +    L     E+ +A+   L       +
Sbjct: 3   ILLVEDDVMLGDGMVDALRSSGYTVDWLQ--QGLPALSVLKSEEFAALILDLNLPDIDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R   Q  P++ ++   +L   +   D+G DD + KP   +E+ AR+ A+ RR K
Sbjct: 61  SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G ++++ + +    +GE   L   E ++L+ L+   G+ ++K Q+  ++YG
Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +DE  E N VE HI  LRKK       D + + R +GY
Sbjct: 181 -WDEGAESNAVEVHIHHLRKK----FYSDLIRNIRGVGY 214


>gi|56540675|gb|AAV92791.1| PmrA [Salmonella bongori]
 gi|56540677|gb|AAV92792.1| PmrA [Salmonella bongori]
          Length = 222

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARVRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +        + G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELTVGKLTLNMGRHQVWMDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYML 216


>gi|237795357|ref|YP_002862909.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229261731|gb|ACQ52764.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G S+    +    E ++   + D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFQDQGYSI--ITASNGREAIEYCDK-DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QICQKIRDKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + ++   G + +  + R    + E      +E  I+E L  +  +  +K QI+  +
Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + N V  HI K+R K ++     + + +   +GY  + N
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKINASLNHIATVWGVGYRWEKN 227


>gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G S+    S      +      D+  ++  +        
Sbjct: 9   ILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMVREQHPDLMILDVMMPE--MDGW 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  SQ+P++ ++     +  +   +SG DD + KP +  E+ AR+ A+ RR+  
Sbjct: 67  EVCRRLREFSQIPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126

Query: 122 SNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N     G   I +    R+  V+GE   L   E  +L  L  + G  +    +   ++G
Sbjct: 127 PNRPIVAGGGEIVIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             +   + + ++ +I  LR+K+         + ++  +GY +
Sbjct: 187 -HEYTRDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRL 227


>gi|56540671|gb|AAV92789.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +          G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELAVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 239

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +          AR D   ++  +   G     
Sbjct: 16  LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDAVILDVMMP--GMDGFG 73

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235


>gi|262373013|ref|ZP_06066292.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262313038|gb|EEY94123.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 223

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G + E  +S              +  ++  L        
Sbjct: 3   ILIIEDETKIASYLVKGLIESGYTAECVHSGLEGLERLKMKSYSLVILDVMLPD--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +I+R  S+VP+I ++    +   +   + G DD + KP  + E+LARV ++ RR + 
Sbjct: 61  DVLKILRQFSKVPVIFLTAKDQILDRVKGLELGADDYLAKPFSYIELLARVKSLLRRQQY 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  N      +++         +  +  L ++E  +L +++ ++ + + + QI S ++ +
Sbjct: 121 NQENEFSIASLKMDLTQHKVWREDTLIDLSKKEFNLLRFMLLHQNEIITRRQIASEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+ +      + + R LGY +
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDDGHDLKLIHTIRGLGYKL 219


>gi|152977294|ref|YP_001376811.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026046|gb|ABS23816.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 221

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 101/224 (45%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++            ++   +      L      D+  ++  L        
Sbjct: 4   ILVIEDNPDIQELIREFLTAQNYKVDVAGTGTEGILLFQKNLYDLVLLDVMLPD--IDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +IIR  S VP+I ++   + +  +  F+ GVDD + KP H+   + RV A+ RR   
Sbjct: 62  SICKIIRGQSDVPIIMLTGLQNEENEIKGFELGVDDYITKPFHYAIFIKRVEAVLRRAAS 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     N  +   + + S      V G+   L  +E  I+  L+ NRGK ++++ + + +
Sbjct: 122 TEVENANILQFHELMLNSTAYAAYVNGDQVELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL        + + + +GY ID
Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----CIPYIKTVKGIGYKID 220


>gi|329767923|ref|ZP_08259435.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
 gi|328838586|gb|EGF88189.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
          Length = 221

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 98/219 (44%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  S++  +  + EE L   +  +   I   ++       
Sbjct: 3   ILVVEDERDLNRIITKHLKKNNYSVD--SCFDGEEALDFVSYSEYDLIITDIMMPNVDGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E    +R   +  P+I ++   +L+  +   DSG DD + KP    E+LAR+  + RR  
Sbjct: 61  EFIARLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ N  +   + +    +     G+   L  +E  +LEYLM N+   +++ QI + ++ 
Sbjct: 121 GLATNVIQVDDVVLDISKKQVLRNGQNIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +D     N+V+  I  +RKKL N      + +KR LGY
Sbjct: 181 -YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGY 218


>gi|239501396|ref|ZP_04660706.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB900]
          Length = 223

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 97/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L        
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPD--IDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 219


>gi|228988075|ref|ZP_04148175.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771645|gb|EEM20111.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E++  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEIDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL YLM N+G  + + Q+ 
Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     V +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYVTTVVRTGYKFEGN 228


>gi|42781806|ref|NP_979053.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
 gi|42737730|gb|AAS41661.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
          Length = 221

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++           ++   +         +    D+  ++  +        
Sbjct: 6   ILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVMMPN--LNGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IR+ S +P+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 64  EVAKMIRSQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G
Sbjct: 124 NNVNNHLIFKEVRIDVDAYRVYVDDVEIFLTTKEFEILQLLFQNERKVLTRENIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E  ++++HI  LRKKL        + + + +GY +D
Sbjct: 184 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKVD 220


>gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262]
 gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262]
 gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023]
          Length = 225

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+  +        
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEGEKIVETEQVHLAVIDVMMPN--MDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL + +R ++  +P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR  
Sbjct: 62  ELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEAKITIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLE 222


>gi|87123222|ref|ZP_01079073.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86168942|gb|EAQ70198.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 256

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 97/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+   +      G  +      E    L      D+  ++  L        
Sbjct: 14  ILVVDDEPAVRRVLVMRLQLAGYQVICAEDGEKALELFHRDSPDLVVLDVMLP--KLDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A+I RR+  
Sbjct: 72  AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRIGR 131

Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  AE             G + V ++ R      E   L   E  +LE L    G+ V 
Sbjct: 132 GSATAEPREVPVGQGVLRLGDLMVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVP 191

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 192 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 242


>gi|319648966|ref|ZP_08003175.1| YcbL protein [Bacillus sp. BT1B_CT2]
 gi|317388960|gb|EFV69778.1| YcbL protein [Bacillus sp. BT1B_CT2]
          Length = 230

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +G  +      E    L      D   ++  L       +
Sbjct: 4   ILLIEDDHSISEMVDHYLTKEGFEVVLAFDGEEGVRLFQQGNYDAILLDIMLP--KLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +  ++IR  S+VP++ IS              G DD + KP    E+ AR+ A  RR   
Sbjct: 62  DFLKMIREQSKVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARIKAAIRRATQ 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +        + V  +    +  GE   L   E ++L   + N  K   K QI+
Sbjct: 122 YSVSEPANQKILRVHELTVDIENVSVQKNGEPLQLTSTEWKMLTLFVTNPKKVFTKEQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++   D   ++N++  H+ +LR+K+ +       + +   +GY +
Sbjct: 182 RSVWN-DDYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 227


>gi|228925839|ref|ZP_04088923.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944403|ref|ZP_04106776.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815305|gb|EEM61553.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228833854|gb|EEM79407.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPT--MDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 138

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 139 HA-QIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 236


>gi|229127229|ref|ZP_04256226.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4]
 gi|228656345|gb|EEL12186.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4]
          Length = 232

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDQDIVRFVKANLMQEGFKV--FSAHNGEESLEIINNNSIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 124 FNQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231


>gi|261339001|ref|ZP_05966859.1| hypothetical protein ENTCAN_05206 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318832|gb|EFC57770.1| DNA-binding response regulator CreB [Enterobacter cancerogenus ATCC
           35316]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  I +   +G  ++ F                ++ ++  L        EL
Sbjct: 8   LVEDEISIADTLIYMLQQEGFEVKAFERGLPVLEAARRQVPALAILDVGLPD--ISGFEL 65

Query: 64  PRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            R +   H  +P++ ++        L   + G DD V KP   RE+ ARV  I RR++ S
Sbjct: 66  CRQLLARHPSLPVLFLTARSDEVDKLLGLEMGADDYVAKPFSPREVCARVRTILRRMQKS 125

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++    G   +          GE   L R E  +L+ L+   G+  ++ Q+   ++G
Sbjct: 126 AAPSDILRIGQFELNEPAARIHWCGEPLLLTRYEFLLLKTLLHAPGRVFSRQQLMDLVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++ +   V++HI  LR KLR       P+ + R +GYS+
Sbjct: 186 EDGDSFD-RTVDTHIKTLRAKLRAVNAEISPISTHRGMGYSL 226


>gi|289643275|ref|ZP_06475400.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506915|gb|EFD27889.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 253

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D         G  +      +      + A+ D+  ++  L        E
Sbjct: 15  LVVDDEANITDLVRMSLRFHGFDVVTATCGQEAVAAVAEAKPDLMVLDVLLSD--IDGFE 72

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R +R   + VP+I ++        +     G DD V KP    E++ARV A+ RR + 
Sbjct: 73  VCRRLRDVGTDVPVIFLTARDRHADKIAGLTCGGDDYVTKPFSVDELVARVRAVLRRTRR 132

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +        + +  D  +    G    L   E ++L YL+AN  + +++ QI  A
Sbjct: 133 DRPSAAAQTLAFADVVLNEDTHEVARAGHPIDLSPTEFKLLRYLLANPRRVLSRVQILDA 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D      VV+ ++S LR+KL    G   + ++R  GY +
Sbjct: 193 VWN-YDFDGAYTVVDQYVSYLRRKL-APYGPPLIHTQRGFGYML 234


>gi|73537794|ref|YP_298161.1| heavy metal response regulator [Ralstonia eutropha JMP134]
 gi|72121131|gb|AAZ63317.1| Heavy metal response regulator [Ralstonia eutropha JMP134]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D  +    + G  ++                 D+  ++  L   G    
Sbjct: 3   ILIVEDEPKAGDYLLKGLTESGFVVDLARDGVDGLAHAREQPYDLIVLDVMLP--GMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R     P++ ++    LQ  L   + G DD + KP    E++ R+  I RR  +
Sbjct: 61  SVLRELRRERDTPVLFLTARDELQDRLKGLELGADDYMVKPFAFAELVMRIRTILRRGPL 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E   +++ +  R     G+   L  +E  +L  L   RG+ ++++ I S ++ +
Sbjct: 121 RESEFIEVADLQIDAIRRRVSRSGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + ++R +GY +D
Sbjct: 181 -NFDSNTNVVDVSIRRLRAKVDDPFDHKLIHTRRGMGYVLD 220


>gi|41407100|ref|NP_959936.1| hypothetical protein MAP1002c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254774011|ref|ZP_05215527.1| hypothetical protein MaviaA2_04954 [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|41395451|gb|AAS03319.1| hypothetical protein MAP_1002c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 257

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  ++  ++          A  DV  ++  L       L 
Sbjct: 35  LLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMAKFDRAAPDVLVLDIMLPDV--DGLR 92

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R      P + ++   S+   +    +G DD + KP    E++AR+  + RR   
Sbjct: 93  ILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRASQ 152

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    + G + V +  R+         L   E  +L +LM N  + +++T+I   +
Sbjct: 153 QPAPTAETLKVGDLVVDTASREVTRGDTPVSLSSTEFELLRFLMRNPRRALSRTEILDRV 212

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D A   ++V+ +IS LRKK+ +      + + R +GY +
Sbjct: 213 WN-YDFAGRTSIVDLYISYLRKKIDSGREP-MIHTVRGVGYML 253


>gi|75761320|ref|ZP_00741297.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491192|gb|EAO54431.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 228

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++            +   +  +  E ++   ++    I   ++       
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQQYKVIVAS--DGLEGMKQFNKQSFDLILLDVMMPNLNGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 71  EVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNN 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++N      + V  D     V     PL  +E  IL+ L+ N  K + +  I   I+G
Sbjct: 131 QSTDNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLRNEKKVLTRDNIVEKIWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ A +  ++++H+  +RKKL        + + + +GY ID
Sbjct: 191 -YEYAGDTRMIDTHMKNIRKKLD----IPYIKTVKGIGYKID 227


>gi|70731532|ref|YP_261273.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68345831|gb|AAY93437.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 225

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D  L+  G +A     G+++E   +      +   A  DV  ++  L    E  L+
Sbjct: 4   LVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMLGVADFDVMVLDLGLPD--EDGLK 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L +  R    ++P++ ++   S+   +D   +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLKQQRQQGLEIPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S N  E G +      R+  + G+   L RRE+ +L+ L+ NRG+ ++  Q+  ++YG 
Sbjct: 122 RSVNLIEHGRLTYDPSTRETLLGGQPVDLSRREQSLLQALLHNRGRVLSSEQLKDSVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE +E N +  HI  LR+KL    G   V++ R LGY +
Sbjct: 182 NDE-LESNALNVHIHHLRRKL----GNGIVETVRGLGYRL 216


>gi|77456430|ref|YP_345935.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77380433|gb|ABA71946.1| heavy metal sensing two-component sytem,response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 226

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 99/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +      G+ G +++   +     +       D+  ++  L   G    
Sbjct: 3   LLVVEDEAKTANFIAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVMLP--GLNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L ++IR     P++ ++   +++  +   + G DD + KP    E+LARV  + RR  +
Sbjct: 61  QLLQLIRQRGATPVLFLTAKDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGPL 120

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     + +    R     G+   L  +E  +L  L + +G+ +++T I S ++ L
Sbjct: 121 REAESYNIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWNL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + N+VE  + +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNMVEVAVRRLRSKVDDPYMPKLIHTVRGVGYQLE 220


>gi|324114941|gb|EGC08906.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
          Length = 219

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDRLIGDGIKTGLIKMGFSVDWFTGGREGKEALYSAPYDAVILDLTLP--GIDGR 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R  R +  + P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE  PL  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LR+KL    G   + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHIHHLRRKL----GSGFIRTVHGIGYTL 216


>gi|255656550|ref|ZP_05401959.1| two-component response regulator [Clostridium difficile QCD-23m63]
          Length = 240

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G ++  F      E L+    +++      ++      +
Sbjct: 6   ILVVEDEKEIADAIEIYLLNQGYNV--FKGYNGLEGLKVIENQEIHLAIIDIMMPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R +   P+I +S        +   + G DD V KP    E+LARV +  RR   
Sbjct: 64  TLTMKLRENHNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTK 123

Query: 122 SNNRAE--------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             N  E               G + +  + ++  V G+       E +IL  LM N G+ 
Sbjct: 124 YLNMVENKEQKVDDDDGVFAIGGLELNENTKEVSVDGKHIKATPIEFKILSLLMRNAGRV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +  +I+  ++   D AV  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 184 FSADEIYERVWN--DNAVNTDTVMVHVRNIREKIEVDPKNPKYLKVVWGVGYKIE 236


>gi|319893322|ref|YP_004150197.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317163018|gb|ADV06561.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 225

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 95/219 (43%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G   +       E  L+   +  +      ++  G    E
Sbjct: 6   LIVDDDPEILNYVATHLQHKGY--QAVTVASGEAALEYLEKHTIDIAIVDIMMDGMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++   + P+I ++   +L      F +G DD V KP    E++ R+ A+ RR +++
Sbjct: 64  LCETLKYDYEYPVIMLTARDALSDKERAFLAGTDDYVTKPFEVAELIFRIQAVLRRYQIA 123

Query: 123 NNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +     + +V+ +   LP +E  +L  L+A   +   + Q+   I+G+ 
Sbjct: 124 TETLLTLGNLTIDQTQLEVKVETKGMILPHKEFELLSLLVAYPKQVFPREQLIEKIWGI- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   +E  V+ HI +LR +L+       +++ R +GY +
Sbjct: 183 DYEGDERTVDVHIKRLRARLKKLGANVYIETVRGIGYKV 221


>gi|295703773|ref|YP_003596848.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801432|gb|ADF38498.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 239

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++          +G  +  F   E +  L+++    +  +   ++      +
Sbjct: 5   ILIVEDEEMIARALQIELEHEGYKV--FVEHEGKSGLEAALHNSIDLVLLDVMLPELSGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  +  +P+I ++   +    +   D G +D + KP    E+LARV    R   
Sbjct: 63  EVLRRIRKKNAYLPVILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRHGA 122

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +     E          + V  + R+   + +   L  +E  +L YL+ N+   +++  I
Sbjct: 123 IIQEVTEKKDVHLSIEDLSVNLETREVIRKNKTIILTPKEYDLLVYLLKNQNIVLSRENI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D   E NVV+ +I  LRKK+  ++    + + R +GY I
Sbjct: 183 LLTVWG-YDYEGETNVVDVYIGHLRKKIEEEINSPLIRTVRGVGYVI 228


>gi|260774096|ref|ZP_05883011.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260611057|gb|EEX36261.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 225

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  ++  N  ++      S   D+  ++  L       L
Sbjct: 3   ILLIEDDPRIASFIERGLKAEGHQIQHLNDGQYAVETVISYEPDLLILDRMLPHC--DGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR A   V ++ +S    +   +    +G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  TICQQIRSAGIDVRILMLSALGDVDERVKGLRTGADDYLAKPFHFEELLARLDALQRRHS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S+     +   + +           ++  L  +E  ILE LM   G   ++ +I + ++
Sbjct: 121 ESSPLPTLQVADLVLCLPTMQVTRDNQLIELTAKELSILELLMNKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+  + +  NVV+ ++ +LRKK+ +      + +KR +GY +
Sbjct: 181 GMHQDPL-TNVVDVYMRRLRKKIDDPFTAPLLKTKRGMGYYL 221


>gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37]
 gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37]
          Length = 228

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G S+                  D+  ++  L        
Sbjct: 3   ILIVDDDPSLRDLLRLALERAGHSVICAADGAMALTHAMRETPDLIVLDIGLPE--MDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +RA S VP++ ++        +   + G DD V KP   RE++ARVAAI RR   
Sbjct: 61  EVCRRLRARSDVPVLFLTARDDEVDRIVGLEMGADDYVTKPFSPREVVARVAAILRRSGT 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++    G + +  + R     G+   L   E ++L+ L+   G+   + ++ +A++G
Sbjct: 121 PARDDTRGHGALTLDREARLCRAAGQPVALTGTEFQMLDTLIGAPGRLFTRAELAAAVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   +  ++SH+  LR+KL +    D +++    G  +
Sbjct: 181 AGAQQ-SDRTMDSHLRNLRRKLADAGIPDAIETVHAQGMRL 220


>gi|94314250|ref|YP_587459.1| transcriptional regulator two components regulatory system
           [Cupriavidus metallidurans CH34]
 gi|93358102|gb|ABF12190.1| transcriptional regulator two components regulatory system
           [Cupriavidus metallidurans CH34]
          Length = 225

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD             ++G  +E  +S++      +      S +    +  G+  +
Sbjct: 3   ILLVDDDQKAARLLARGLQEEGYDVETAHSVDVA---AAHNCYAFSLLILDWMLPGKSGV 59

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R +R    + P++ ++   ++   +   D+G DD + KP    E+LA V A+ RR++
Sbjct: 60  EFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVE 119

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++         + +    R     G    L  +E  IL  L+ + G+ V++ Q+   I+ 
Sbjct: 120 LAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIWH 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               A++ N+++ H+  LR+KL        + + R  G+ I
Sbjct: 180 ADLIAID-NLIDVHMKNLRRKLDPPGMAALIQTVRGQGFRI 219


>gi|304309688|ref|YP_003809286.1| Putative heavy metal response regulator precursor [gamma
           proteobacterium HdN1]
 gi|301795421|emb|CBL43619.1| Putative heavy metal response regulator precursor [gamma
           proteobacterium HdN1]
          Length = 224

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D       + G   +                 D+  ++  L   G    
Sbjct: 3   ILLVEDEPKTGDYLKQGLCEAGFPTDWVQDGISGSHQALHETYDLIILDVMLP--GRSGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR A   +P++ ++    +   +   ++G DD + KP    E+LAR+  + RR +
Sbjct: 61  EVLQDIRSAGKDMPVLFLTARDEVNDRVRGLEAGADDYLVKPFAFAELLARIRTLLRRER 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      + +    R      +   L  RE  +L  LM  RG+ + +  I S ++ 
Sbjct: 121 SREPDVLNVADLELDLRTRRATRSHQRIELTAREFALLALLMRRRGEILPRALIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  + +LR K+ +      + + R +GY+++
Sbjct: 181 M-NFESDTNVVEVAVRRLRAKIDDPFEPRLIHTVRGMGYTLE 221


>gi|258545772|ref|ZP_05706006.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
 gi|258519017|gb|EEV87876.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
          Length = 219

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D        +   +   ++         + R D   ++  L        
Sbjct: 4   ILLIEDDPAIADPLSYALAREQWQVVWHDTGIAALAALQAQRFDCIVLDVGLPDT--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR     PLI +S        +   + G DD   KP  +RE+++R+ A+ RR   
Sbjct: 62  ELCRRIRQQWTTPLIFLSARNEEIDRIVGLELGADDYCGKPFSNRELISRIKAVCRR--- 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           SN        +     +     G    L R E R+L +L+A+ G+   + Q+ + ++   
Sbjct: 119 SNETETASVWQHNDSAQTISYHGTTLDLTRYEYRLLRHLLAHPGQTFDRDQLVNTLWDHP 178

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           D  ++   V+SHI  LR+KLR      DP+ ++R  GY ++
Sbjct: 179 DH-IDNRTVDSHIKTLRQKLRAIAPDADPIRTRRGYGYHLE 218


>gi|119944067|ref|YP_941747.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
 gi|119862671|gb|ABM02148.1| two component transcriptional regulator, winged helix family
           [Psychromonas ingrahamii 37]
          Length = 230

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++             ++  +  E   +       D + I+  L       +
Sbjct: 3   ILLVEDDISLQSNLKQHLIASHYRVDAASDGEEGLFQGIEYNYDAAIIDLGLP--KIDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +R  +   P++ ++   S Q  ++  D+G DD + KP +  E++AR+ A+ RR  
Sbjct: 61  TVITRLREKNRNFPILILTARDSWQDKVEGLDAGADDYLCKPFYPEELVARLNALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     GP  + +   + + + E   L   E +I EY M + G+  +KT +   IY 
Sbjct: 121 GKASPVINNGPFSINTSSLEVKKEHEFISLSASEYKIFEYFMLHPGEVKSKTVLTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +LRKKL     +  +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNEYGLIETLRGQGYRL 220


>gi|66046441|ref|YP_236282.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257148|gb|AAY38244.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330972923|gb|EGH72989.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 222

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++         +  +S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLP--GMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R+     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+KL    G   V+++R  GY
Sbjct: 181 DGENE-RDSNVIEVHVNHLRRKL----GRAVVETRRGQGY 215


>gi|16331577|ref|NP_442305.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001644|dbj|BAA10375.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 224

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 101/230 (43%), Gaps = 22/230 (9%)

Query: 1   MFVLIDDRALVK--------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           + V+ ++  L +        +GY      DG+   GF   +           D+  +   
Sbjct: 5   VLVVEEEEKLARFMELELKYEGYDVSVARDGLK--GFTQAQEF-------PPDLIIVNGA 55

Query: 53  LIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L   G   LEL R +R   S++P+I I+    ++  +   D+G DD + KP +  E  AR
Sbjct: 56  LP--GMSGLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFAR 113

Query: 112 VAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +    RR    S+   +   +R     R+ +    +  L  +E  +L+YL+++  + + +
Sbjct: 114 IRVQLRRTHTTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTR 173

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            QI   ++G +D   + N++E +I  LR KL        + + R +GY +
Sbjct: 174 EQILERVWG-YDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGYVL 222


>gi|237811046|ref|YP_002895497.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|237502846|gb|ACQ95164.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
          Length = 269

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     +    L +   E    +   L       +
Sbjct: 52  ILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAA--LTALGGEAYDLLLLDLGLPKRDGI 109

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 110 DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 169

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 170 GRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 229

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 230 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 265


>gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G S+    S      +      D+  ++  +        
Sbjct: 9   ILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQHPDLMILDVMMPE--MDGW 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  SQ+P++ ++     +  +   +SG DD + KP +  E+ AR+ A+ RR+  
Sbjct: 67  EVCRRLREFSQMPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126

Query: 122 SNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N     G   I +    R+  V+GE   L   E  +L  L  + G  +    +   ++G
Sbjct: 127 PNRPIVAGGGEIMIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +   + + ++ +I  LR+K+  +      + ++  +GY +
Sbjct: 187 -HEYTKDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRL 227


>gi|30018758|ref|NP_830389.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|29894299|gb|AAP07590.1| Two-component response regulator [Bacillus cereus ATCC 14579]
          Length = 232

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 12  LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMP--GMDGF 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 189 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 229


>gi|332968660|gb|EGK07713.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Psychrobacter sp. 1501(2011)]
          Length = 240

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 94/231 (40%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +   +    + +    +  +    +  I   L+      +
Sbjct: 5   ILIIEDDPDLAELISDYLTMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDGM 64

Query: 62  ELPRIIR-----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           ++ + IR       ++VP++ ++        +   + G DD + KP   RE+LAR+ A+ 
Sbjct: 65  QVCQKIRGGKNTQTNKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVL 124

Query: 117 RRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR +  N      +    G + VF D  +  +  +   L   + ++L Y   + GK + +
Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKVLNR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q++ A+         +  ++ HIS+LR  + +       + + R +GY  
Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|324325942|gb|ADY21202.1| two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 232

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++  +       +
Sbjct: 6   ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPQ--MDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE+  L + E  IL  + A + +     +I
Sbjct: 124 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGEIINLTKTEYDILYLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|258652754|ref|YP_003201910.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258555979|gb|ACV78921.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 88/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++         DG  +      E    L      D+  ++  L   G   LE
Sbjct: 5   LVVDDEPHIRTVLRGYLEADGFEVVDAADGETAVDLVRRDPPDLVLLDVMLP--GIDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S   +I ++        L     G DD V KP   RE+ ARV A+ RR +  
Sbjct: 63  VLRRLRAVSDAYVILVTARAEEVDKLVGLAVGADDYVTKPFSPREVTARVKAVLRRDRGG 122

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +   GR+    G    L   E  +L  L    G+  ++ Q+   ++
Sbjct: 123 RTGEDVVLRFRGLSIDLAGREVHADGAPVALSSLEFDLLAALAGAPGRVFSRAQLLERVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           G +D   +E VV+ HI  LR +L +       + + R +GY  
Sbjct: 183 G-YDFYGDERVVDVHIRSLRSRLGDPAADPRLIATVRGVGYKF 224


>gi|229822838|ref|ZP_04448908.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271]
 gi|229787651|gb|EEP23765.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271]
          Length = 234

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G      +          +   DV  ++  L       LE
Sbjct: 10  LIIEDEKNLARFVDLELQHEGYETAICHDGRKGLETALNQEWDVILLDLMLPE--LNGLE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R IR     P+I ++   S+   +   D G DD + KP    E+LAR+ A++RR+   
Sbjct: 68  VCRRIRPIKDTPIIIMTARDSVIDRVSGLDQGADDYIVKPFAIEELLARLRALFRRIDHN 127

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   +  +   + +   GR  +   +V  L +RE  +L YLM N    +++  + 
Sbjct: 128 KEEKNQSQQSSVKYRNLVIEKKGRIVKRDDQVIDLTKREYELLLYLMENLNTVMSREVLL 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +   VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 188 DKVWG-YKTEVETNVVDVYIRYLRNKIDVPGKDSYIQTVRGTGYVM 232


>gi|297565290|ref|YP_003684262.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849739|gb|ADH62754.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 223

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   V+ G        G  +    +    E  +   + D+  ++  L    G ++
Sbjct: 5   LLVVEDEPAVRMGLRLSLSRAGHQV--LEAATATEAWEQLPQADLVVLDWMLPDEPGVRL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R    +  +P++ ++        ++    G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  LERLRRDGRYENLPVLMLTARAGEGDRVEGLTRGADDYLTKPFSTPELLARIQALLRRSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S  R E G + +  +     + G    L RRE  +L +L  + G+  ++ ++   ++G 
Sbjct: 123 KS-GRIERGGLALDLERHQASLDGRPLDLTRREFDLLAFLARHPGRVYSREELLERVWGP 181

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +       V+ H+++LR+KL  +      +++ R +GY  
Sbjct: 182 -EFMGTARTVDQHVAQLREKLQEDPKLPRFLETLRGVGYRF 221


>gi|224543644|ref|ZP_03684183.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523417|gb|EEF92522.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM
           15897]
          Length = 225

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++         G  +  FN+             D++  +  L       +
Sbjct: 5   IYVIEDDENIQEIIKLSLESSGYQITLFNNAIDAIVAIHEDTPDLAIFDVMLPE--LDGI 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + IR  +   P++ +S        +   DSG DD + KP    E+ ARV ++ RR +
Sbjct: 63  SAIKQIRKTNTTLPILILSAKDREIDKVRGLDSGCDDYMTKPFGVLELAARVRSLLRRSQ 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +T  + +         QGE   L  +E ++L YL+ N+ + V + ++ + I+G 
Sbjct: 123 HHSKVIKTTSLEIDKSKHIILKQGEKLELTHKEYQLLLYLVENKERVVEREELLNNIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E   ++ HI  LR KL +  G   + + R +GY  
Sbjct: 182 YDFVGESRALDVHIRSLRAKLGDD-GHHYIKTIRSVGYRF 220


>gi|119513415|ref|ZP_01632446.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119461935|gb|EAW42941.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 241

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 92/226 (40%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++            +E     +    L      D+  ++  L        
Sbjct: 8   ILVVDDDPAVRNLIQRFLIKQTYQVEAAEDGKTALALFEQFNPDLVILDVNLPDVI--GF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L + +++ + V ++ ++        +  F  G DD + KP    E+  RV AI RR + 
Sbjct: 66  NLCQEMQSRNGVFVLMLTSRADEADKIRGFSKGADDYLTKPFGLGELEVRVGAILRRQRI 125

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R+  +  +V PL   E  +L +L ++ G+   + ++   +
Sbjct: 126 VTTAEQKRLVFEKLMIDPARREVALNNQVIPLTALEFDLLHFLASHPGRVWRRAELIQEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +  ++   ++ VV+ HI ++RKK+  +      + + R +GY  + 
Sbjct: 186 WD-YEYVGDQRVVDVHIGQIRKKIEIDVSQPALIQTVRGVGYKFEC 230


>gi|73661850|ref|YP_300631.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643287|sp|Q49ZT8|HSSR_STAS1 RecName: Full=Heme response regulator hssR
 gi|72494365|dbj|BAE17686.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 224

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +       +S E       + + D++ ++  +        E
Sbjct: 5   LIVDDDPKILEYVSKYIEREHFETIVQSSAENALSYLETHQVDIAIVDVMM--GKMSGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L +I++    +P+I ++   +L      + +G DD V KP   +E++ R+ A+ +R  V+
Sbjct: 63  LCKILKEDFDIPVIMLTARDALSDKEQAYLTGTDDYVTKPFEVKELMFRIKAVLKRYNVN 122

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            NN    G + +     + +   +   LP +E ++L  L +N  +   +  +   I+G F
Sbjct: 123 INNEVSIGNLTLNQSYLEIQSSSKSMNLPNKEFQLLFLLASNPRQVFNRDALIEKIWG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   +E  V+ HI +LRK+L        + + R LGY +D
Sbjct: 182 DYEGDERTVDVHIKRLRKRLEKIDASVTIHTVRGLGYKVD 221


>gi|65317712|ref|ZP_00390671.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 209

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 10/200 (5%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89
            +++ E  LQ   + + S +   L+      +E+ R +R  + VP++ ++        + 
Sbjct: 4   TAIDGEVALQLFNQNNYSIVILDLMMPKXDGIEVCRKLRDKTNVPILMLTAKDHEVDKIL 63

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLKV--------SNNRAETGPIRVFSDGRDPE 141
               G DD + KP    E++ARV A+ RR  V                 + +  +     
Sbjct: 64  GLSIGADDYITKPFSIHEVVARVKALIRRFLVLGSNINVQEKTTLAFKGLTINLNTYTVH 123

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              E   L  +E  +L++  +N G+   KTQ+F  ++   +   ++N V  HI KLRKK+
Sbjct: 124 TNKEEISLTGKELELLKFFTSNPGQVFTKTQLFRNVWD-DNYIEDDNTVMVHIRKLRKKI 182

Query: 202 R-NKLGFDPVDSKRFLGYSI 220
             +      + +   +GY  
Sbjct: 183 EIDPSNPKFIQTVWGIGYKF 202


>gi|326562467|gb|EGE12785.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 46P47B1]
 gi|326564282|gb|EGE14512.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 103P14B1]
 gi|326567216|gb|EGE17336.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 12P80B1]
 gi|326568279|gb|EGE18361.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC8]
 gi|326569979|gb|EGE20026.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC1]
 gi|326570061|gb|EGE20107.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC7]
 gi|326572915|gb|EGE22900.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis CO72]
 gi|326573839|gb|EGE23792.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis O35E]
 gi|326574741|gb|EGE24677.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 101P30B1]
          Length = 230

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            +      +         + D+  ++  +   GE  +
Sbjct: 5   ILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMP-HGESGI 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  R ++ +     +P+I ++        +   D+GVDD + KP   RE+++RV A+ RR
Sbjct: 64  DFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAVLRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +       + G + + +  +     G    +   E R+L + + +  +   + QI  A
Sbjct: 124 TGIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSERAYTRAQILDA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  ++E  ++ HI +LRK L        + + R  GY  
Sbjct: 184 VWGG-NVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGYRF 226


>gi|270261453|ref|ZP_06189726.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044937|gb|EFA18028.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 223

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L++        + G  ++     +  ++       D++ ++  L   GE  L 
Sbjct: 4   LVVEDNGLLRHHLSVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIVDLGLP--GEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  RAH  ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRAHQMKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIVLPPFQIDLSRRELSVGEQQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKKL+ +   + + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQAEYPQEVITTVRGQGYRFD 221


>gi|256376753|ref|YP_003100413.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255921056|gb|ACU36567.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +        +G  +   +       L  S R D   ++  +   G   L
Sbjct: 3   ILVVDDEVAVAEAVTRTLRFEGYEVTTAHDGAQALDLVRSLRPDGVILDVTMPVLG--GL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +  R +RA     P++ ++    +   +   D+G DD + KP   +E+LARV A+ RR  
Sbjct: 61  DACRALRASGDTTPVLMLTARAEVSDRVAGLDAGADDYLAKPFALQELLARVRALVRRGG 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       + + +  R+         L R E  ILE  + N    +++  +F 
Sbjct: 121 YAGTAARSEALRFADLLLDAGTREVRRGDRQVALTRTEFSILETFLRNPRLVLSREAMFR 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D     N ++ ++  LR+KL        + + R +GY +
Sbjct: 181 TVWG-HDFGAGSNGLDVYVGYLRRKLEQDGEPRLIHTVRGVGYVL 224


>gi|123443239|ref|YP_001007213.1| transcriptional activator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090200|emb|CAL13063.1| transcriptional activator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D            G+ G S++   S +  E L  +   D  AI   ++  G    
Sbjct: 3   LLLVEDEEKTSSYLSRALGESGFSVDI--SADGAEGLHYALEYDYDAIILDVMLPGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IRA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  RVLEGIRASKQTPMLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRST 120

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + +   + +    R     G    L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGADITQLQIHDLHLDLLARRVFRTGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+        + + R +GY ++ 
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDAPFEVKLLHTVRGMGYVLEV 223


>gi|116748153|ref|YP_844840.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697217|gb|ABK16405.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 227

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 15/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEKV 60
           ++++D   +           G ++  F + E  E L+ +   R  +  ++  +   G   
Sbjct: 7   LIVEDDDDILHLLAYNVRAAGFAV--FTAQEGYEALRIAKERRPGLIVLDLMIP--GADG 62

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ R ++  S    +P+I ++        +   + G DD V KP   RE++ R+ A+ R
Sbjct: 63  FEVCRELKRGSDTRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAVLR 122

Query: 118 RL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R        +  +   +R+  D     + GE       E ++L  L+ +RGK  ++  + 
Sbjct: 123 RSPPDGAQGSVWQLEGLRIDFDAHKVLIDGEDVLFTATEFKLLVELIRSRGKVKSRDYLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +        V++H+ +LR+KL      D V++ R +GY  
Sbjct: 183 DKVWG-YHFEGYARTVDTHVRRLRQKLGPY--ADRVETVRGIGYRF 225


>gi|326795286|ref|YP_004313106.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546050|gb|ADZ91270.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 219

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G     G DG +++             S   D+  ++  L        
Sbjct: 3   ILVVEDDESLGSGLCTALGQDGYTVDWLKDGLHASQALQSEHFDLVILDVGLPR--MDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + +R   S++P++ ++   +++  +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 61  SVLKNMRLLKSEIPVLVLTARDAIEDRITGLDAGADDYLVKPFEVDELKARVRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   E   IR+  + +   ++ +   L RRE  +L  L+++ G    +  +   +YG
Sbjct: 121 GRASAHIEYKNIRIEPNAQQVFMEDKEVTLTRREYSLLVELVSHPGHVFTRDVLQQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E HI  +RKKL + L    V + R +GY +D
Sbjct: 181 WGDD-VESNTLEVHIHHIRKKLFSGL----VRTVRGVGYIVD 217


>gi|299069010|emb|CBJ40258.1| response regulator in two-component regulatory system with CopS,
           regulation of copper resistance [Ralstonia solanacearum
           CMR15]
          Length = 228

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +       + G  ++   +      L ++   D+  ++  L        
Sbjct: 3   LLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATTGDYDLLVLDVMLPD--LDGW 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +RA    VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+ +R +   + +    R     G+   L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 TPVALDRLQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFHPKLIQTVRGMGYVLE 222


>gi|295396500|ref|ZP_06806661.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970692|gb|EFG46606.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 240

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPE--LDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV  + RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHTVLRRPRTS 133

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              A+       G + +        V      L R E  +L  L    G+ + +  + + 
Sbjct: 134 TTPAQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 237


>gi|229134079|ref|ZP_04262899.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228649414|gb|EEL05429.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFV--DGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LNADIITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|170021416|ref|YP_001726370.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC
           8739]
 gi|169756344|gb|ACA79043.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
          Length = 226

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +         G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTGAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R A    P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + +    R     G+   L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGKRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  + +LR K+ N      + + R +GY ++
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLE 222


>gi|326793099|ref|YP_004310920.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543863|gb|ADZ85722.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 225

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G     G +G  ++   ++   +    +   D+  ++  L        
Sbjct: 3   ILVVEDDLSIAMGIEYSLGQEGYEVKVCGNVAEGKAYIENEVVDLCLLDLTLPD--GSGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL ++ + +  +P+I ++        +   D G DD V KP   RE+++R+ ++ RR   
Sbjct: 61  ELCKVAKENRDIPVIFLTACDDEVNVVMGLDMGADDYVTKPFRIRELISRIKSVLRRHNK 120

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++         IR+ +         +   L   E R+L   + + G+ +++ Q+   I+
Sbjct: 121 TDSTKAIFNYNNIRINTLEAKVYKNNKEVQLTALEYRLLLTFITHEGQALSRNQLLEGIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +  + V +N V  +I +LR KL +  G    + + R +GY +
Sbjct: 181 DIAGDFVNDNTVTVYIKRLRDKLEDDPGNPTFITTIRGIGYKV 223


>gi|148656746|ref|YP_001276951.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148568856|gb|ABQ91001.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 231

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +    +      G +++     E    L S    D+  ++  L       L
Sbjct: 3   LLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPA--LDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA+   + ++ ++     +  +   D+G DD + KP H  E+LAR+ A+ RR L
Sbjct: 61  DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V     +   +++    +   +  +   L R+E  IL YLM ++G+ + +  +   ++ 
Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
                   N V  HI+ LR+KLR+ +     +++   +GY +
Sbjct: 181 GT-VNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRL 221


>gi|54297348|ref|YP_123717.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Paris]
 gi|148358969|ref|YP_001250176.1| transcriptional regulator CpxR [Legionella pneumophila str. Corby]
 gi|296107018|ref|YP_003618718.1| two-component system, OmpR family, response regulator CpxR
           [Legionella pneumophila 2300/99 Alcoy]
 gi|53751133|emb|CAH12544.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Paris]
 gi|148280742|gb|ABQ54830.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Corby]
 gi|295648919|gb|ADG24766.1| two-component system, OmpR family, response regulator CpxR
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 226

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D        +G ++   +  E       +   D   ++  L        
Sbjct: 5   ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKKALNQVFDAIILDVMLP--KLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR H + P++ ++        +   + G DD + KP + RE++AR+ AI RR + 
Sbjct: 63  EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   I V    R   + G+   L   E  ILE L+ + G+  +K ++     
Sbjct: 123 IPTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYAL 182

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G    A +   ++ HIS LR KL  N  G   V + R  GY  +
Sbjct: 183 GRKYTAYD-RSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMFN 225


>gi|304393600|ref|ZP_07375528.1| transcriptional activator protein CopR [Ahrensia sp. R2A130]
 gi|303294607|gb|EFL88979.1| transcriptional activator protein CopR [Ahrensia sp. R2A130]
          Length = 228

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  +V           G  +      E  E   S+A  DV  ++  +  +    L
Sbjct: 5   ILLAEDDTIVAHQLTLTLETAGHEVTHVGDGEQGEARASAAEFDVLIVDRMMPKR--DGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +R+     P++ +S    +   +    +G DD + KP    E+LARV A+ RR  
Sbjct: 63  TMVSNLRSQGVNTPVLILSALGQVDDRVAGLRAGGDDYLTKPYAQTELLARVEALARRST 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +   +  G + +    R  E  GE   L  RE R+L+YLM + G+ V +T +   ++
Sbjct: 123 VQATETSSSVGDLSLDRLSRKAERSGEEIILQPREYRLLDYLMRHSGQLVTRTMLLENVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            L +   + NV++ H+S+LR K+        + + R  GY ++
Sbjct: 183 EL-NFDPQTNVIDVHVSRLRSKIDKGFDKPLLHTVRGKGYRLE 224


>gi|206577736|ref|YP_002236556.1| transcriptional regulatory protein QseB [Klebsiella pneumoniae 342]
 gi|288933539|ref|YP_003437598.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290511402|ref|ZP_06550771.1| DNA-binding transcriptional regulator QseB [Klebsiella sp. 1_1_55]
 gi|206566794|gb|ACI08570.1| transcriptional regulatory protein QseB [Klebsiella pneumoniae 342]
 gi|288888268|gb|ADC56586.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289776395|gb|EFD84394.1| DNA-binding transcriptional regulator QseB [Klebsiella sp. 1_1_55]
          Length = 219

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G S++ F +    +    SA  D + ++  L   G   L
Sbjct: 3   ILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLP--GIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R      P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + +  +     + GE   L  +E  +LE L+ N G+ + +  I   +Y 
Sbjct: 121 GQSSSELRHGKVSLDPNRLTASLDGESLVLKPKEFALLELLLRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE H+  LR+KL    G   + +   +GY++
Sbjct: 180 TWDDEVSSNAVEVHVHHLRRKL----GSGFIRTVHGIGYTL 216


>gi|119964678|gb|ABM17107.1| response regulator receiver [Sulfobacillus acidophilus DSM 10332]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD A +++         G  +                  DV  ++  L        +
Sbjct: 2   LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPE--MDGFQ 59

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +   +R     +P+I ++     +  +   D G DD + KP   RE+++RV A+ RR   
Sbjct: 60  VLAEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFL 119

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + V    R  +   +V  L  RE  +L +L ++  +  ++  +   +
Sbjct: 120 APADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRV 179

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSI 220
           +GL D   +   V+ H+++LR+K L +   ++ +++    GY  
Sbjct: 180 WGL-DFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRF 222


>gi|33336059|gb|AAQ12900.1| response regulator protein [Enterococcus faecium]
          Length = 220

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   A   + G  ++                  +  ++  L   G    
Sbjct: 5   ILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLP--GMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   + + V +HI  LR KL      + + + R +GY ++ +
Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEES 219


>gi|269102403|ref|ZP_06155100.1| putative transcriptional regulatory protein PhoP [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162301|gb|EEZ40797.1| putative transcriptional regulatory protein PhoP [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 224

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++     +   + G  ++  ++ E   +   +   D++ ++  L  +    L
Sbjct: 3   ILIVEDDPILSHHLKSQLSELGNQVQCADTAEEGLFFAQNYPNDIAIVDLGLPDR--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R+   ++P++ ++   + Q  +   ++G DD + KP    E++AR++A+ RR  
Sbjct: 61  SLIKDMRSKDLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEELVARLSALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G IRV    +   +  EV  L   E  +LEYLM +  + V+K ++   +Y 
Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVFINEEVLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  IS+LRKK       +P+ + R  GY  +
Sbjct: 180 -EDQEGDPNTIEVMISRLRKKFTKTGQENPISTIRGQGYIFE 220


>gi|238927184|ref|ZP_04658944.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|304437129|ref|ZP_07397091.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|238884966|gb|EEQ48604.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|304369888|gb|EFM23551.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 230

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +        DG +++     +  + L  +   D+  ++  L   G    
Sbjct: 4   ILLVEDDAAIAELERDYLEADGFAVDISADGDAGKRLAMTGDYDLLLLDVMLP--GADGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ +S        +     G DD + KP    E+ ARV A   R + 
Sbjct: 62  AICRDVRKAYDIPILMVSARLEDVDKIRALGLGADDYIIKPFSPSELAARVKAHLARYER 121

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + +    R   + G    L  RE  +L +L  +     +K  ++ 
Sbjct: 122 LKGSAGDAAVLRFGALEIQPQTRRVFLGGNEVILAAREFDLLLFLAQHPQVVFSKETLYD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            ++ L D       V  HI++LR+K+ R+      + +    GY  +
Sbjct: 182 RVWEL-DAMGSTATVSVHINRLREKMERDPAHPQWLQTVWGAGYRFN 227


>gi|187780065|ref|ZP_02996538.1| hypothetical protein CLOSPO_03661 [Clostridium sporogenes ATCC
           15579]
 gi|187773690|gb|EDU37492.1| hypothetical protein CLOSPO_03661 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G ++   +S++  +   S  + D+  ++  L        
Sbjct: 4   ILLVEDNISLNRGIQFSLMKEGYNVIAIDSIKEAQQKLSKEKIDLIILDVNLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S +P+I ++   S    ++  D G DD + KP   RE+++RV AI RR   
Sbjct: 62  DYCLHIRKTSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRTSK 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  N  ++  I  + +    E   +   L + E ++L+Y M N  K ++K QI   ++ 
Sbjct: 122 DSDFNIIQSKDIVFYINEMKVEKYEKEIFLSKTELKLLQYFMKNYQKILSKEQILENLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +  E + EN V  +I ++R+K+       + + + R +GY 
Sbjct: 182 IDGEFINENTVAVNIRRIREKIEEIPSKPEYIQTIRGIGYV 222


>gi|326802679|ref|YP_004320497.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650499|gb|AEA00682.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 228

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G  +    + + +E L + S   D++ I   ++  G+  
Sbjct: 3   LLIVDDDKEIVELLTIYSSNEGYDV--IQAYDGDEALKRISENPDIALIILDIMMPGKDG 60

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L + + +R+    VP++ +S   +    +    +G DD V KP +  E++ARV ++ RR 
Sbjct: 61  LTVVKELRSREVDVPILLLSAKSADMDKISGLTTGADDYVTKPFNPLEVMARVKSLLRRS 120

Query: 120 KVSN----NRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             S+    +  E GP+ +  +  +   + GE   L   E  IL  L ++  +  +  +IF
Sbjct: 121 GASDQGSGDTIEIGPLIIHKNSHEVKTIDGEDIQLTALEFGILYLLASHPNEVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++   +  V    V  H+S LR K+    G D  + +   +GY I
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIETATGGDKVISTVWGVGYKI 226


>gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 239

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   +S +  E L+   + +  A+   L+  G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEV--VHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 231


>gi|319898558|ref|YP_004158651.1| two-component system regulatory protein [Bartonella clarridgeiae
           73]
 gi|319402522|emb|CBI76065.1| two-component system regulatory protein [Bartonella clarridgeiae
           73]
          Length = 222

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G   +   + E   +L S+   D   ++  L       +
Sbjct: 3   ILIVEDDRDLNHQLAKAVKDAGYVSDSAFNGEDGYFLGSTEPYDAVILDIGLSR--MDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++  R  +    +P++ ++        +   D+G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  QVVERWRKEGYSMPILMLTARDRWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N    G + + +      V G++  L   E R+L YLM +  K V++T++   +Y 
Sbjct: 121 GHATNTLSCGEVLLDTKTSRVFVDGQLIKLTSYEFRLLAYLMHHCDKVVSRTELIEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKKL    G D +++ R LGY I
Sbjct: 181 Q-DFNKDSNTIEVFIRRLRKKL----GVDSIETVRGLGYRI 216


>gi|218462225|ref|ZP_03502316.1| two-component response regulator protein [Rhizobium etli Kim 5]
          Length = 223

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPE--MDGV 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    R A   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIICGPVRLDTKSSKATVNGTPLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|49474036|ref|YP_032078.1| two-component response regulator [Bartonella quintana str.
           Toulouse]
 gi|49239540|emb|CAF25897.1| Two-component response regulator [Bartonella quintana str.
           Toulouse]
          Length = 228

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           FG+ G S++     +    L  +   D+  ++  L+ +    L
Sbjct: 3   ILVIEDDHETGRYLEKAFGESGHSVDVAYDGDTGYALAETENYDIMVVDRMLLHR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SIIAELRAKGNKTPVLILSALGQVNDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       +   +   L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDKNIVLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLHTVRGAGYML 221


>gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A++ D        +G      +         +S   DV  ++  +       LE
Sbjct: 12  LVVDDEAMLADLLSQALRHEGWETATASDGLDALAKAASFHPDVVILDVQMPR--MDGLE 69

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
               +RAH   +P++ ++   ++   +    +G DD V KP    E+ ARV A+ RR   
Sbjct: 70  TLERLRAHDPHMPVLFLTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRRSGR 129

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +            + +  +  D    GE   L   E  +L +LM N G  ++K +I  A+
Sbjct: 130 AQQTRSTVLTVADLTLNVESHDVSRGGENITLTNTEFELLRFLMENVGIVLSKQRILDAV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 190 W-SYDFGGQVNVVELYISYLRKKI-DSGRPALIRTVRGAGYIM 230


>gi|269792328|ref|YP_003317232.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 226

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F + G  ++          L  S + D   ++  L        
Sbjct: 3   LLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPE--MDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R     VP+I ++   S++  +   + G DD + KP   +E++ARV A+ RR  
Sbjct: 61  EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  + GP+ +    R+  V     PL RRE  ILE LM    +  ++ +I + ++ 
Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     NVV+ HI  LR KLR       V + R +GY +
Sbjct: 181 K-EYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYKV 220


>gi|182416794|ref|ZP_02948188.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237667398|ref|ZP_04527382.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379374|gb|EDT76871.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237655746|gb|EEP53302.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 224

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         D  ++   ++ E   ++ S+ + D+  ++  +       +
Sbjct: 5   ILIVEDELRIRFLLRDYLTKDDFNVFEASNGEEGLFVFSTQKIDLVILDIMMPV--MDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R  S VP+I ++        L  +D G DD + KP   + ++A+V A+ +R + 
Sbjct: 63  TMLEKLREVSTVPVILLTAKSEEDDKLQGYDYGADDYITKPFSPKVLIAKVKALLKRSRE 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + ++  E   + +     +  V G+   L  +E  +L YL+ N G  +++  I   ++G
Sbjct: 123 DIDSSSQEFNGLTINKLSHEVRVNGKEITLSPKEYELLIYLVTNEGIALSRDNILDNVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L D   +   V++++ +LR+KL ++   + + + R  GY  +
Sbjct: 183 L-DYYGDIRTVDTNVKRLREKLLDR--SNLIVTVRGSGYKFE 221


>gi|94971486|ref|YP_593534.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553536|gb|ABF43460.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 97/220 (44%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +          +G  +E  ++ E       S    +  ++  L   G   L
Sbjct: 4   ILLIDDDIELTSLLTDYLKSEGFEVEAVHNGEQGLQKALSGNYSIVVLDIMLP--GISGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S++P++ ++        +   + G DD V KP + RE+LAR+ AI RR++ 
Sbjct: 62  DVLRRLRPQSRIPVLLLTARGEDVDRIVGLELGADDYVPKPFNTRELLARIQAILRRVQG 121

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +    R  +  G+       E  +L YL+ N G  V + ++   + 
Sbjct: 122 GQTPGAIVNVGDVTLDPGARTVQRGGQKLDFTSVEFDLLRYLLENAGNVVPREELAERVL 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           G    +  +  ++ HISK+R+KL ++   + + + R  GY
Sbjct: 182 GRR-FSPFDRSIDMHISKIRRKLLDE-SDELIKTVRGTGY 219


>gi|150388491|ref|YP_001318540.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948353|gb|ABR46881.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 17/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++++D   + +        D + +  F+       +E LQ +   D   I   ++  G+
Sbjct: 4   ILILEDDISIAE-----LQRDYLEINQFDVDIEARGDEGLQRALNHDYDLIILDIMLPGK 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ + IR     P++ +S        +     G DD + KP    E++ARV A   R
Sbjct: 59  DGFEICKEIRLTKNTPILLVSAKKEDIDKVRGLGLGADDYMTKPFSPNELVARVRAHIAR 118

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +       +     + G I +    R   V  +   L  +E  +L  L  N  +   K 
Sbjct: 119 FERLTSNEDIHKGLIQVGEISIEQLSRSVFVNQKETNLTTKEFDLLYLLAQNPQRVFRKE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++F  I+G +D   + + V  HI ++R+K+ R+      +++   +GY  
Sbjct: 179 ELFETIWG-WDSFGDISTVTVHIRRIREKIERDPSNPKYIETIWGVGYKF 227


>gi|229169551|ref|ZP_04297255.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613941|gb|EEK71062.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 229

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    L      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYKVLEARDGKEALALFKEEEVDLVILDIMLPE--LDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQA 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--SKHITTVVRTGYKFEGN 228


>gi|311747935|ref|ZP_07721720.1| DNA-binding response regulator [Algoriphagus sp. PR1]
 gi|126574903|gb|EAZ79261.1| DNA-binding response regulator [Algoriphagus sp. PR1]
          Length = 222

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 101/218 (46%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       ++  +++  ++ +    L  S   D+  ++  L   G   +
Sbjct: 3   ILVVEDEPGISNFLKQGLEEEAFAVDLADNGKSGLELALSGSYDLLLLDWMLP--GISGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R  R   S  P+I ++   ++  T+    SG +D + KP H  E+L R+    R  K
Sbjct: 61  ELTRQFRKQFSDTPIIFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIRVQLRAKK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +   GPI + ++        +   L ++E  +LEYLM N+ K   +T+I  +++ +
Sbjct: 121 GAKEKFTLGPIVLDTERHIVLKNEQEIQLTQKEFALLEYLMRNKNKVCRRTRIIESVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                   V++  I+ LRKKL  +   D + + R +GY
Sbjct: 181 H-FDYNTGVIDVFINSLRKKLDLQKDEDYIQTIRGVGY 217


>gi|315283776|ref|ZP_07871856.1| heme response regulator HssR [Listeria marthii FSL S4-120]
 gi|313612577|gb|EFR86639.1| heme response regulator HssR [Listeria marthii FSL S4-120]
          Length = 225

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   N     E +  + +  ++ I+  +        
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAERIVETEQVHLAVIDVMMPN--MDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA +  +P+I ++   +L      F+ G DD V KP   +E++ R+ A+ RR  
Sbjct: 62  ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPQELVFRIRALLRRSN 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLE 222


>gi|312870288|ref|ZP_07730416.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus oris PB013-T2-3]
 gi|311094172|gb|EFQ52488.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus oris PB013-T2-3]
          Length = 238

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 105/236 (44%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEK 59
            ++I+D   V +             E  ++ +E EE   ++  + DV  ++  L  K   
Sbjct: 3   ILMIEDNHSVCEMMAMFLKKQNWQYEFAYDGVEAEEKFNAAPDKWDVILLDLNLPKK--D 60

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++   IR  S  VPLI ++   +    +   + G DD V KP     ++AR+ A+YRR
Sbjct: 61  GMQVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSAITLIARIKALYRR 120

Query: 119 LKVSNNRAE------------TGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRG 165
            +++   AE            T   R+ +  R+  +  +    L  +E  +L+ L +   
Sbjct: 121 SQLAKQPAEQPGTADRDFDVKTKNFRMNTKTREVFLYDQQIDDLTPKEFDLLKTLASKPR 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + Q+   ++  ++   +E  V++HI KLR+KL + LG   + +   +GY  D
Sbjct: 181 QVFTREQLLQLVWD-YEYYGDERTVDAHIKKLRQKLED-LGPQVIKTVWGVGYKFD 234


>gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 228

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +     +   E L+++  +D   I   L+       
Sbjct: 5   ILIVEDEKNLARFVSLELQHEGYEVTV--EVNGREGLETALEKDFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR   
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + N+     + +    R      +   L +RE  +L  LM+N  + + + ++ S 
Sbjct: 123 ETEKKAPNQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMSNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225


>gi|118466262|ref|YP_880424.1| TrcR family transcriptional regulator [Mycobacterium avium 104]
 gi|118167549|gb|ABK68446.1| two component transcriptional regulator trcr [Mycobacterium avium
           104]
          Length = 254

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  ++  ++          A  DV  ++  L       L 
Sbjct: 32  LLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMAKFDRAAPDVLVLDIMLPDV--DGLR 89

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R      P + ++   S+   +    +G DD + KP    E++AR+  + RR   
Sbjct: 90  ILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRASQ 149

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    + G + V +  R+         L   E  +L +LM N  + +++T+I   +
Sbjct: 150 QPAPTAETLKVGDLVVDTASREVTRGDTPVSLSSTEFELLRFLMRNPRRALSRTEILDRV 209

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D A   ++V+ +IS LRKK+ +      + + R +GY +
Sbjct: 210 WN-YDFAGRTSIVDLYISYLRKKIDSGREP-MIHTVRGVGYML 250


>gi|86607748|ref|YP_476510.1| DNA-binding response regulator RpaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556290|gb|ABD01247.1| DNA-binding response regulator RpaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 250

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D         G  +         + L      D+  ++  L       L
Sbjct: 4   ILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQV--DGL 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     S++P++ ++     Q  ++ F++G DD + KP   +E+L RV A+ RR
Sbjct: 62  TVCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP+ +  +  +    G+   L   E  +L  LM   G+ V+ ++
Sbjct: 122 SDRIPQAAKHGEILTYGPLTLVPERFEALWFGKTIKLTHLEFDLLHCLMQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G ++   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILQEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230


>gi|328545642|ref|YP_004305751.1| Two component transcriptional regulator, winged helix family
           [polymorphum gilvum SL003B-26A1]
 gi|326415382|gb|ADZ72445.1| Two component transcriptional regulator, winged helix family
           [Polymorphum gilvum SL003B-26A1]
          Length = 219

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          DG S++    L+       S   D+  ++  L     + +
Sbjct: 3   ILLIEDDTTLGAAVRDQIAADGQSVDWVTRLDAARDAIGSTSYDLILLDLMLPD--GRGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + +RA   V P+I ++    +   ++  ++G DD + KP    E+ AR+ ++ RR  
Sbjct: 61  TFLKGLRARGDVTPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYS 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N     G + +    R     G   PL  RE  + E  +A  G+ ++K Q+   +Y 
Sbjct: 121 GNPNPILTHGALDIDLAARSVHRDGRPVPLTAREWALFEAFLARPGQLLSKAQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E H+S+LRKKL    G   ++++R +GY +
Sbjct: 180 AFDAEVESNTIEVHVSRLRKKL----GTSVIETERGMGYRL 216


>gi|323137186|ref|ZP_08072265.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322397544|gb|EFY00067.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 230

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D  +  F + G   +            S    DV  ++  L       L
Sbjct: 6   ILIIEDDREASDYLVKAFREQGHVADHAADGLSGYASASEGDYDVLIVDRMLP--KMDGL 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L   +R    + P + +S    +   +    +G DD + KP    E+LARV A+ RR  
Sbjct: 64  SLISSLREQKVETPALILSALGQVDDRVKGLRAGGDDYLPKPYSFSELLARVEALARRRV 123

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +        G + +        V G+   L  RE R+LEYLM N G+ V +T +   +
Sbjct: 124 GPRGEETHYRVGDLELDRLSHKVTVGGQEIALQPREFRLLEYLMKNAGQVVTRTMLLENV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 184 WD-YHFDPQTNVIDVHISRLRAKIDKGRENPLLHTIRGAGYMI 225


>gi|188532493|ref|YP_001906290.1| DNA-binding transcriptional regulator BasR [Erwinia tasmaniensis
           Et1/99]
 gi|188027535|emb|CAO95382.1| Two-component system response regulator [Erwinia tasmaniensis
           Et1/99]
          Length = 220

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++ G       +G +++   +         S +  +  ++  L  +     
Sbjct: 3   ILIVEDDALLQQGLSLALSGEGYAVDCAANAAQGAAFLQSGQYSLVVLDLGLPDR--DGA 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R     +P++ ++   +L   +D  D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  HLLRQWRKEQQDLPVLILTARDALSDRVDGLDAGADDYLIKPFALAELKARVRALIRRYQ 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  + G I +    +   V  +   +  +E  +L  L+   G+ V +  +   +Y 
Sbjct: 121 GKSDNLLQHGDISLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+    N +E HI  LR+KL    G + + + R +GY ++
Sbjct: 181 WQDD-TSSNTLEVHIHNLRRKL----GKERIKTVRGVGYRLE 217


>gi|148378355|ref|YP_001252896.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153933802|ref|YP_001382754.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934962|ref|YP_001386305.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153938363|ref|YP_001389720.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168177695|ref|ZP_02612359.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|148287839|emb|CAL81905.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929846|gb|ABS35346.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930876|gb|ABS36375.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152934259|gb|ABS39757.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|182670981|gb|EDT82955.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|295317808|gb|ADF98185.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 228

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 89/224 (39%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + ++         +   +    + E         + DV  ++  L   G   L
Sbjct: 4   ILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLP--GVDGL 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R     + +I ++        +   + G DD + KP +  E+  R+ AI RR+ 
Sbjct: 62  EVCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +N    GP ++    +      E   +   E  +++  + N GK   + ++   
Sbjct: 122 AVKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           ++G +D   +  +V+ +I +LR K+         + +    GY 
Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224


>gi|56540673|gb|AAV92790.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +          G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELAVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|38347964|ref|NP_941213.1| DNA-binding transcriptional activator CusR [Serratia marcescens]
 gi|156936338|ref|YP_001440254.1| DNA-binding transcriptional activator CusR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|157412123|ref|YP_001481464.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC
           O1]
 gi|170766561|ref|ZP_02901014.1| transcriptional activator protein CopR [Escherichia albertii
           TW07627]
 gi|218697185|ref|YP_002404852.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989]
 gi|237728472|ref|ZP_04558953.1| SilR [Citrobacter sp. 30_2]
 gi|238910394|ref|ZP_04654231.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|295697874|ref|YP_003602531.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|296105224|ref|YP_003615370.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|38259441|emb|CAE51669.1| probable transcriptional regulatory protein(silver resistance)
           [Serratia marcescens]
 gi|99867148|gb|ABF67793.1| SilR [Escherichia coli APEC O1]
 gi|156534592|gb|ABU79418.1| hypothetical protein ESA_04238 [Cronobacter sakazakii ATCC BAA-894]
 gi|170123999|gb|EDS92930.1| transcriptional activator protein CopR [Escherichia albertii
           TW07627]
 gi|218353917|emb|CAV00347.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli 55989]
 gi|226909950|gb|EEH95868.1| SilR [Citrobacter sp. 30_2]
 gi|295059683|gb|ADF64421.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059986|gb|ADF64723.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|322614029|gb|EFY10965.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322617921|gb|EFY14814.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625465|gb|EFY22291.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629930|gb|EFY26703.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632181|gb|EFY28932.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636468|gb|EFY33175.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322644676|gb|EFY41212.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651301|gb|EFY47685.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322652785|gb|EFY49124.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659087|gb|EFY55339.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663211|gb|EFY59415.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668698|gb|EFY64851.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674498|gb|EFY70591.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678296|gb|EFY74357.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682447|gb|EFY78468.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684160|gb|EFY80166.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323192284|gb|EFZ77516.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196289|gb|EFZ81441.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201437|gb|EFZ86503.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206453|gb|EFZ91414.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212045|gb|EFZ96872.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216950|gb|EGA01673.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220317|gb|EGA04771.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224364|gb|EGA08653.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228292|gb|EGA12423.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233440|gb|EGA17533.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237098|gb|EGA21165.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243687|gb|EGA27703.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246071|gb|EGA30058.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323250847|gb|EGA34725.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257657|gb|EGA41343.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261866|gb|EGA45433.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267742|gb|EGA51224.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323268622|gb|EGA52089.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|323974959|gb|EGB70069.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 226

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 102/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++ +   + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEV 223


>gi|332296285|ref|YP_004438208.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179388|gb|AEE15077.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 225

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +     F ++G +++   + E   +   +   D   ++  L       +
Sbjct: 6   LLIVEDEKTLANLIKKGFEEEGYAVDVTYNGEDGLFFAKNNIYDAIVLDIMLPI--IDGI 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R  +   P+I ++   S++  +   DSG DD + KP    E+L+RV A+ RR  
Sbjct: 64  SLLKELREQNISTPVIILTAKDSVKDKVLGLDSGSDDYLTKPFSFEELLSRVRALIRRRF 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+   +   + + +  +  +   +   L  +E  +LEYL  N+ K +++T I   +Y 
Sbjct: 124 ATSSPIIKISDLVIDTAQKTIKRGNKRIDLSAKEYALLEYLALNKNKVISRTSIIEHLYD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  +  NV++  I+++R K+        + + R +GYS+
Sbjct: 184 E-DFDLYSNVIDVFINRIRNKIDKDFDKKLIHTYRGIGYSL 223


>gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D   +     G  +               +R D+  ++  L        
Sbjct: 10  LLVVDDEPNIRDLLASSLRFAGFDVVTAEDGSGAFHEAQESRPDLIVLDVMLPD--MDGF 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A    P++ ++    ++  +     G DD V KP    E++AR+ AI RR  
Sbjct: 68  TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 127

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +  D  +    G    L   E ++L YL+ N G+ V+K QI   +
Sbjct: 128 GGEEEDALLRVGDLVIDEDAHEVTRAGVQIDLSPTEFKLLRYLVINAGRVVSKMQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +  +D   E  +VES+IS LR+KL  +    + + +KR +GY +
Sbjct: 188 W-EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYIL 230


>gi|254386084|ref|ZP_05001398.1| two-component system regulator [Streptomyces sp. Mg1]
 gi|194344943|gb|EDX25909.1| two-component system regulator [Streptomyces sp. Mg1]
          Length = 240

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 29/240 (12%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED-----VSAIEAFLIGK 56
            +L++D   V     A+    G  +    +   EE LQ+    D     V  ++  L  +
Sbjct: 3   LLLVEDDDHVAAALSAILARHGFRVTHARN--GEEALQALLPADAPPFGVVLLDLGLPDQ 60

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ 
Sbjct: 61  --DGYEVCGKIRKRTSTPVIMVTARADVRSRIHGLNMGADDYVVKPYDTGELLARIHAVA 118

Query: 117 RRLKVSNNRA----------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
           RR   S N A                  GP+ +    R   V G   PL R+E  +L  L
Sbjct: 119 RRTGGSENTATATPGPAGTGGEPGVVRLGPVSIELPTRRVSVDGADVPLTRKEFDLLALL 178

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               G    + QI S ++    E      +E H++ LR KLR       +++ R +GY +
Sbjct: 179 AQRPGVVFRREQIISEVWRTSWEGTG-RTLEVHVASLRSKLRMPA---LIETVRGVGYRL 234


>gi|144899128|emb|CAM75992.1| two-component transcriptional regulator FeuP, winged helix family
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 222

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++     E    L  +   D + ++  L       +
Sbjct: 3   ILIVEDEPALAFRLQQALEAAGFAVDTAYDGENGWHLGDTEPYDAAVLDLGLP--KLDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +  R   A   +P++ ++        +  F++G DD V KP    EI+ R+ A+ RR  
Sbjct: 61  SVLSRWREAGRDLPVLILTARGRWSEKMQGFNAGADDYVTKPFEMDEIVYRLRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S      GP+R+ ++G    + G+V  L  +E RIL YLM + GK V++T++   +Y 
Sbjct: 121 GHSQPELACGPVRLDTNGGRVSLDGQVLQLTAQEFRILSYLMHHPGKVVSRTELMEHVYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   + NV+E  I +LRKK+    G + + + R  GY +
Sbjct: 181 R-NFDSDSNVLEVMIGRLRKKI----GAEMIQTVRGQGYVL 216


>gi|42779713|ref|NP_976960.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735630|gb|AAS39568.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 223

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +   D   ++   + E   +L S    D   ++  +        
Sbjct: 3   LLVVEDNASLLESIVQIL-HDEFEVDTALNGEDGLFLASQNIYDAILLDVMMPE--MDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|53718445|ref|YP_107431.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|53725056|ref|YP_102132.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|124383485|ref|YP_001028396.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126440297|ref|YP_001057896.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126448259|ref|YP_001079631.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126452671|ref|YP_001065131.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|167718314|ref|ZP_02401550.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167737359|ref|ZP_02410133.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167814484|ref|ZP_02446164.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167822949|ref|ZP_02454420.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167844517|ref|ZP_02470025.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167893045|ref|ZP_02480447.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167901503|ref|ZP_02488708.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167909750|ref|ZP_02496841.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167917773|ref|ZP_02504864.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|254176802|ref|ZP_04883459.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254181603|ref|ZP_04888200.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254187561|ref|ZP_04894073.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254203812|ref|ZP_04910172.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254208790|ref|ZP_04915138.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254261588|ref|ZP_04952642.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254360157|ref|ZP_04976427.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52208859|emb|CAH34798.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52428479|gb|AAU49072.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|124291505|gb|ABN00774.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126219790|gb|ABN83296.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126226313|gb|ABN89853.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126241129|gb|ABO04222.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147745324|gb|EDK52404.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147750666|gb|EDK57735.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148029397|gb|EDK87302.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157935241|gb|EDO90911.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160697843|gb|EDP87813.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|184212141|gb|EDU09184.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254220277|gb|EET09661.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 220

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     +    L +   E    +   L       +
Sbjct: 3   ILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAA--LTALGGEAYDLLLLDLGLPKRDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 216


>gi|87122181|ref|ZP_01078064.1| Two component response regulator [Marinomonas sp. MED121]
 gi|86162501|gb|EAQ63783.1| Two component response regulator [Marinomonas sp. MED121]
          Length = 226

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V     +     G  ++     +      S    D   ++  L   G   L 
Sbjct: 4   LVVEDDKEVAQFIGSSLQQIGYVVDRCEDGKQGLLQASVETYDAIILDRMLP--GLDGLN 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +RA  S VP++ +S    +   ++   +G DD + KP    E+ AR+  ++RR   
Sbjct: 62  LLKTLRATGSNVPILLLSAMADVSHRVEGLQAGADDYLTKPFAFSELHARLEVMFRRNTH 121

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    ++ +    +  L  RE R+LEYL+ N+ + V +T +  +++
Sbjct: 122 ESGEQTSLHCADLSLNLLTQEAKRAETLISLQPREYRLLEYLLRNQDRVVTRTMLLESVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 182 D-YHFDPQTNVIDVHISRLRNKIDKPFSQVLIHTIRGRGYVI 222


>gi|315126788|ref|YP_004068791.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas sp. SM9913]
 gi|315015302|gb|ADT68640.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas sp. SM9913]
          Length = 224

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +  S++  +  E   +  +    D++ ++  L       +
Sbjct: 3   ILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLP--KIDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL    RA    +P++ ++     Q  ++  D+G DD + KP H  E++AR  A+ RR  
Sbjct: 61  ELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N     GPI++ +  +   V  +   L   E ++LEYLM N  K ++K+++   IY 
Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVNDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  + +LRKKL      +PV++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFVLRLRKKLDPDGVLNPVETLRGRGYRL 220


>gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
 gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
          Length = 228

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +     +   E L+++  +D   I   L+       
Sbjct: 5   ILIVEDEKNLARFVSLELQHEGYEVTV--EVNGREGLETALEKDFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR   
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + N+     + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225


>gi|281491496|ref|YP_003353476.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375214|gb|ADA64727.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 228

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   + D        +   +   F+ L   E  + +A+  +  +    +      L
Sbjct: 6   LIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFE-TAKPAIDVVLLDWMIPKLDGL 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R ++   +  P+I ++    +   +   D+G DD + KP    E+LAR+  I+R+  
Sbjct: 65  TVLRRMKKIQADTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKWS 124

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S+++  E   ++V       EV G+   L +RE  +L Y + +RG  V++  I   ++G
Sbjct: 125 NSSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDDVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D   +EN V++++  LR K+        +++ R +GY ++
Sbjct: 185 M-DFDGQENTVDAYVRYLRAKIDLPNHKSLIETVRGIGYRLN 225


>gi|222871904|gb|EEF09035.1| predicted protein [Populus trichocarpa]
          Length = 284

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 108/223 (48%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG +      G  +    N  E +  L +S+  D+  ++  L       
Sbjct: 63  ILIAEDDQVLADGLLRSLRGSGAVVSHVANGSEADTALMTSSEFDLLILDLGLP--KMHG 120

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +R     +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 121 LEVLKKLRGRGDALPVLILTAADSVEERVQGLDYGADDYMAKPFALSELEARVRALTRRG 180

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 181 MGGASSTIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 240

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              DE V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 241 EWGDE-VSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 280


>gi|169628810|ref|YP_001702459.1| putative two-component system response regulator [Mycobacterium
           abscessus ATCC 19977]
 gi|169240777|emb|CAM61805.1| Putative two-component system response regulator [Mycobacterium
           abscessus]
          Length = 227

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G +++  ++             D+  ++  L   G   L
Sbjct: 7   ILVVDDEPTICASISARLRAEGYAVDTEDNGLDAVRHCRENPPDLMVLDVMLP--GLDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R ++AH+ +P++ ++   +    L     G DD + KP   R ++ARVAA+ RR   
Sbjct: 65  EVCRQVQAHAPIPVLMLTARGTETDMLVGLGVGADDYLPKPFSMRVLVARVAALLRRTHR 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G +R+    R    + +   L R E  +L YL  N    +++ ++   ++
Sbjct: 125 IAPPSTDVRIGQVRIDVSERRVYHRDDEVHLTRTEFDLLAYLADNPRVAISRDRLLDQVW 184

Query: 179 GLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G           V+SHI  LR+KL    G + + +   +GY+++
Sbjct: 185 GWSAGLPSGRRTVDSHIKALRRKL----GQELIRTVHGIGYALE 224


>gi|148378608|ref|YP_001253149.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932965|ref|YP_001382995.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934579|ref|YP_001386541.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|170761006|ref|YP_001785954.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947859|ref|YP_002802950.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148288092|emb|CAL82160.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929009|gb|ABS34509.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930493|gb|ABS35992.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|169407995|gb|ACA56406.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226841886|gb|ACO84552.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 227

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 102/225 (45%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   + D  ++    DG  ++G F + + ++ L      D+  ++  L    E   
Sbjct: 6   LVVEDEISINDILVSALRADGYKVKGVFLAKDAKDAL-DFFHPDLVLLDINLPD--ESGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R I     +P+I ++    +   +   + G DD + KP + +E+L RV    RR+  
Sbjct: 63  ELCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVNK 122

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +++   I      +V  +GR      +   L  +E  +LE+ + NR    ++  + +
Sbjct: 123 YKEKSDKEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD   E   V+ H+ +LR KL  +     +D+   +GY +
Sbjct: 183 KVWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTVFGIGYVM 226


>gi|126699731|ref|YP_001088628.1| two-component system response regulator [Clostridium difficile 630]
 gi|254975704|ref|ZP_05272176.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255093090|ref|ZP_05322568.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255101245|ref|ZP_05330222.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
 gi|255307120|ref|ZP_05351291.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
 gi|255314833|ref|ZP_05356416.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255517507|ref|ZP_05385183.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255650618|ref|ZP_05397520.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|255656088|ref|ZP_05401497.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|260683714|ref|YP_003214999.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260687374|ref|YP_003218508.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|296450481|ref|ZP_06892237.1| response regulator [Clostridium difficile NAP08]
 gi|296879395|ref|ZP_06903389.1| response regulator [Clostridium difficile NAP07]
 gi|115251168|emb|CAJ68999.1| Two-component response regulator [Clostridium difficile]
 gi|260209877|emb|CBA63796.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260213391|emb|CBE05019.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|296260742|gb|EFH07581.1| response regulator [Clostridium difficile NAP08]
 gi|296429541|gb|EFH15394.1| response regulator [Clostridium difficile NAP07]
          Length = 222

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + +++        +G  ++  N              D+  ++  +        
Sbjct: 5   ILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPN--LDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + ++IR  S VP+I ++        L  FD   DD + KP     ++ RV AI RR   
Sbjct: 63  GVCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRSNK 122

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + N        +++  +    E+ GE   L  +E  IL+ L+    + + +  +  +I+G
Sbjct: 123 TINDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDSIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D   +  +V++HI  +RKK+        + + + +GY+++ +
Sbjct: 183 -YDYYGDTRIVDAHIKNIRKKI----SLPYIKTVKGIGYTLEKD 221


>gi|229017208|ref|ZP_04174118.1| Two-component response regulator vanR [Bacillus cereus AH1273]
 gi|229023385|ref|ZP_04179889.1| Two-component response regulator vanR [Bacillus cereus AH1272]
 gi|228737946|gb|EEL88438.1| Two-component response regulator vanR [Bacillus cereus AH1272]
 gi|228744088|gb|EEL94180.1| Two-component response regulator vanR [Bacillus cereus AH1273]
          Length = 247

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G ++  F++   EE L+     DV      ++      +
Sbjct: 21  ILIVDDDRDIIRFINVNLEQEGFTV--FSADNGEEALEVLNNNDVQLAILDVMMPQMDGI 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 79  ELCRRIREKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  +   R +     +I
Sbjct: 139 FNQNTVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILCLMAVTRNRVFTMEEI 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 199 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246


>gi|188590060|ref|YP_001921679.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
 gi|188500341|gb|ACD53477.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
          Length = 223

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 105/222 (47%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++         DG ++  F + + EE L   ++E +  I   ++      LE
Sbjct: 6   LIVEDELKIRFLIRDYLLKDGFNI--FEASDGEEGLFQFSKEKIDLIILDIMMPKMNGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           +   +R  S VP+I ++     +  L+ ++ G DD + KP   + ++A+V A+ +R +  
Sbjct: 64  MLEKLREVSNVPVIFLTARGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKRTRED 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++      + V     + +V   +  L  +E  +L YL+ N    +++  I   ++G+
Sbjct: 124 LDSSIQNFNGLSVNQLSHEVKVNDNIILLSPKEYELLIYLINNESIALSRDNILDNVWGI 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D   +   V+++I +LR+KL +K     + + R  GY  + 
Sbjct: 184 -DYYGDIRTVDTNIKRLREKLLDK--SSYIVTVRGSGYKFEV 222


>gi|153939783|ref|YP_001391249.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935679|gb|ABS41177.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319285|gb|ADF99662.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 229

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            +++DD   +       F  D    +G+  +      ++     +D+  I   ++     
Sbjct: 5   ILIVDDEDDI-----VSFMKDYFEDQGYGVITASNGREAIEYCDKDIDIILLDIMMPNID 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR 
Sbjct: 60  GFQVCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRRE 119

Query: 120 KV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           K     + ++   G + +  + R    + E      +E  I+E L  +  +  +K QI+ 
Sbjct: 120 KRIPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
            ++G +D   + N V  HI K+R K ++     + + +   +GY  + N
Sbjct: 180 KVWG-YDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEIN 227


>gi|187927671|ref|YP_001898158.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|309780716|ref|ZP_07675457.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA]
 gi|187724561|gb|ACD25726.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|308920398|gb|EFP66054.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA]
          Length = 224

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G  ++     E       +     + ++  L       +
Sbjct: 3   ILLVEDDPLLGDGIRAGLQQQGFQVDWVRDGEAAWRELRTDAYVAAILDLGLPR--MDGV 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R A   VP++ ++   ++   +   D G DD + KPI   E+ AR+ A+ RR  
Sbjct: 61  DVLRKVRGAGIAVPILVLTARDAIPDRVRGLDLGADDYIVKPIDLHELSARLRALVRRAH 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +     I +    R     G    L  RE  +L  LM N G+ +++ Q+   +Y 
Sbjct: 121 GHPTEQLRARGIVLEPASRTVFCNGRAVALSTREFDLLHALMLNAGRVLSREQLEQCLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + V  N VE HI  LR KL    G D + + R +GY +
Sbjct: 180 PWGQEVGSNSVEVHIHHLRVKL----GSDLIVTVRGVGYML 216


>gi|161525507|ref|YP_001580519.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|189349765|ref|YP_001945393.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|160342936|gb|ABX16022.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
 gi|189333787|dbj|BAG42857.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 227

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G  ++   +         S   D+  ++  L        
Sbjct: 3   LLVIEDENKTADYVRQGLMEAGFVVDLARNGLDGHHQAMSETYDLVILDVMLPDV--DGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A  QVP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVQSLREAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N  +R +   + +    R     G+   L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APNHPDRIQIADLLLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY++D
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDAFDPKLIHTVRGMGYTLD 222


>gi|29831310|ref|NP_825944.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608425|dbj|BAC72479.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 245

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   ++         +G ++                  DV  ++  +   G   L+
Sbjct: 16  LLAEDDRAIRHALERALTLEGYAVTAVADGVEALAQAHRTPPDVLLLDVMMP--GIDGLQ 73

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++RA     P++ ++        +   D+G DD V KP    E+ AR+ A+ RR   
Sbjct: 74  VCRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTGN 133

Query: 122 S-----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +           + +     +R+    R          L R E  +LE L+ N G  +  
Sbjct: 134 ASLDAPKEEPSPSGQVSVAGLRMDVQARRAWRGEREVELTRTEFDLLELLVRNAGIVLDH 193

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           T I+  I+G +D       +  ++  LR+KL        + + R +GY +
Sbjct: 194 TTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDQPGAPALIHTVRGVGYVL 242


>gi|91785110|ref|YP_560316.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689064|gb|ABE32264.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 266

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   +    +   S    D+  ++  L       L
Sbjct: 9   ILIAEDDSILADGLVRSLRQSAYAVDHVKTGVEADTALSMQTFDLLILDLGLPR--MSGL 66

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 67  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR   V  +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 127 GGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 187 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLE 225


>gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 89/221 (40%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++   I     +   +    +      L    + D+  ++  L        
Sbjct: 5   ILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEKPDLVLLDIMLPD--MDGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + I   +  + +I ++        +   + G DD + KP    E++AR+ AI RR  
Sbjct: 63  QVCKEISCDYPSLSVIMLTARGQDLDKVRGLELGADDYIIKPFSPMELVARIKAILRRAG 122

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N+  E   GP RV  + +       +     RE  +++  + N  K   + +I + ++
Sbjct: 123 KQNSSVEIHIGPFRVDMEAQSIYKNDVLLDFTPREFSLMKVFINNINKAFTRDEILNIVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           G  D   +   V+ HI ++R+K+ +       +++    GY
Sbjct: 183 GE-DFVGDPKTVDVHIRRIREKIEDDPSNPKYIETLWGRGY 222


>gi|251797128|ref|YP_003011859.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544754|gb|ACT01773.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 231

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D      G +G       +           + D+  ++  L  +    L
Sbjct: 6   ILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDR--SGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + + A   +P++ ++    +   +   + G DD + KP   RE++ R+  I RRL  
Sbjct: 64  DICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRLAQ 123

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    +           I V    R    +GE   L  +E  +L  L+  RG+   + ++
Sbjct: 124 AQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRAEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +++G +D   +   V++HI +LRKKL      D + +   +GY  +
Sbjct: 184 LESVWG-YDFPGDMRTVDTHIQRLRKKLDAA---DLITTVFGIGYKFE 227


>gi|167835609|ref|ZP_02462492.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 220

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     +    L +   E    +   L       +
Sbjct: 3   ILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAA--LTALGGEAYDLLLLDLGLPKRDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSESLIRHGTLTLDPASHQVTLGGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 216


>gi|52841668|ref|YP_095467.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|54294527|ref|YP_126942.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Lens]
 gi|33415232|gb|AAQ18123.1| CpxR [Legionella pneumophila]
 gi|52628779|gb|AAU27520.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|53754359|emb|CAH15843.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Lens]
 gi|307610141|emb|CBW99687.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           130b]
          Length = 226

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D        +G ++   +  E       +   D   ++  L        
Sbjct: 5   ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKRALNQVFDAIILDVMLP--KLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR H + P++ ++        +   + G DD + KP + RE++AR+ AI RR + 
Sbjct: 63  EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   I V    R   + G+   L   E  ILE L+ + G+  +K ++     
Sbjct: 123 IPTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYAL 182

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G    A +   ++ HIS LR KL  N  G   V + R  GY  +
Sbjct: 183 GRKYTAYD-RSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMFN 225


>gi|319403885|emb|CBI77471.1| two-component system regulatory protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 222

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G   +   + E+  +L S+   D   ++  L   G   +
Sbjct: 3   ILIVEDDRDLNHQLAKAIKDAGYVFDSAFNGEYAYFLGSTESYDAVILDIGL--SGMDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ +  R     +P++ ++        +   D+G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  QVVKKWRKEGYSMPVLMLTVCDRWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N    G + + +      + G++  L   E R+L YLM +  K V+KT++   +Y 
Sbjct: 121 GHATNTLSCGEVLLDTKTSRVFIDGQLIKLTSYEFRLLSYLMHHSDKVVSKTELIEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL    G D +++ R LGY I
Sbjct: 181 Q-DFDKDSNTIEVFVRRLRKKL----GVDSIETVRGLGYRI 216


>gi|315441548|ref|YP_004074425.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
 gi|315265203|gb|ADU01944.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
          Length = 251

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +   +    +  +    ++      +      DV  ++  L   G   LE
Sbjct: 21  LVVDDEAALAEVVASYLNREHFTTRIVDNGPDAVAVARDFDPDVVILDLGLP--GMDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR + +
Sbjct: 79  VCRQLRTFSDAYVVMLTARDTEMDTIVGLTVGADDYVAKPFSPRELVARIRAMLRRPRAT 138

Query: 123 NN-----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            GP+R+   GR+  + GE   L R E  IL  L A  G  +++ 
Sbjct: 139 PEPESDRGGDLPAPLSFGPLRIDVAGREVSLDGEPILLTRTEFDILAALSARPGVVLSRR 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  +R+KL  +      V + R +GY +
Sbjct: 199 QLLETVR-EGPWVGNEHLVDVHIGHVRRKLGDDPAAPRYVITVRGVGYRM 247


>gi|293609501|ref|ZP_06691803.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827953|gb|EFF86316.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 223

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 97/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +    + G   E  +       +    + D+  ++  L        
Sbjct: 3   ILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPD--IDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + +++R  S++P+I ++    +   +   + G DD + KP  + E+LAR+ ++ RR + 
Sbjct: 61  SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  N      +++   G      G +  L + E  +L YL+ N+ + V + QI S ++ +
Sbjct: 121 LQENELSISDLKMDVVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N ++  + +LR K+        + + R LGY I
Sbjct: 181 -NFDTDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 219


>gi|229591797|ref|YP_002873916.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363663|emb|CAY51014.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 226

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 110/220 (50%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D  L+  G +A     G ++E   +      +  +A  D+  ++  L    E  L+
Sbjct: 4   LVCEDDELIASGIVAGLTAQGFTVERVATAGAARAMLKAATFDIMVLDLGLPD--EDGLK 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L +  R+   ++P++ ++   S+   +D   +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLQQQRSQGLEIPVLILTARDSVTNRVDGLQAGADDYLLKPFDLRELAARLQTLLRRVAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S N  E G +      R+  + G+   L RRE+ +L+ L+ N+G+ ++  Q+  ++YG 
Sbjct: 122 RSVNLIEHGRLAYNPSSRETFLGGQPVDLSRREQALLQALLHNKGRVLSSEQLKDSVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE +E N +  HI  LR+KL    G   V++ R LGY +
Sbjct: 182 NDE-LESNALNVHIHHLRRKL----GNGIVETVRGLGYRL 216


>gi|229059564|ref|ZP_04196945.1| Two-component response regulator vanR [Bacillus cereus AH603]
 gi|228719768|gb|EEL71363.1| Two-component response regulator vanR [Bacillus cereus AH603]
          Length = 244

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +  F++   EE L+      +      ++      +
Sbjct: 18  ILIVDDDRDIVRFVNANLMQEGFKV--FSAHNGEEALEIINNNGIQLAILDIMMPQMDGI 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 76  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 135

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N               + +    R   + GE   L + E  IL  + A   +     +I
Sbjct: 136 FNQNAVQVIKKEINIRGLEIDEMSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEI 195

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 196 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 243


>gi|228913340|ref|ZP_04076973.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846249|gb|EEM91268.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 225

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTTDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|256824367|ref|YP_003148327.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687760|gb|ACV05562.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 222

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  +   ++             DV  ++  L   G   +E
Sbjct: 2   LVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLP--GMDGIE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S+  ++ ++     +  L+    G DD + KP   RE++ARV A+ RR + +
Sbjct: 60  VCRRVRAFSECYVLMLTARGDERHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTT 119

Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  E     G + +        V G+V  L R E  +L  L     +  ++ Q+   ++
Sbjct: 120 VSAPEPERVCGDLVIDLAAHGARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +E +V+ HI  LR+KL        +D+ R +GY +
Sbjct: 180 DPA-WVGDERLVDVHIKNLRRKLDADPAR-YIDTVRGVGYRM 219


>gi|21221787|ref|NP_627566.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787037|ref|ZP_05525468.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289770930|ref|ZP_06530308.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|81859427|sp|Q9ZEP4|CSEB_STRCO RecName: Full=Transcriptional regulatory protein CseB
 gi|3980223|emb|CAA10325.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|4585590|emb|CAB40858.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289701129|gb|EFD68558.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 234

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 99/236 (41%), Gaps = 29/236 (12%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++        DG ++    +G + LE         R D++ ++  L   G 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLESFRAD----RPDIALLDVMLP--GL 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 62  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121

Query: 119 LKVS--------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
              +                    G + V +DG +    G    L   E R+L    +  
Sbjct: 122 FGHAGGGDRTEGAGAAETGGVLTFGDLEVDTDGMEVRRAGRPVGLTPTEMRLLLEFSSAP 181

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 182 GTVLSRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 232


>gi|325113029|ref|YP_004276975.1| two-component response regulator [Acidiphilium multivorum AIU301]
 gi|325052496|dbj|BAJ82833.1| two-component response regulator [Acidiphilium multivorum AIU301]
          Length = 225

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A           ++G + +     E           D   ++  L  +     E
Sbjct: 4   LIVEDEAKTAAYLRKGLEENGFTTDVATDGETGLQFARHGGYDAIILDIMLPRR--DGFE 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   IR   S   ++ ++    +   +   ++G DD + KP    E+LARV  I RR   
Sbjct: 62  ILAEIRRRDSHTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGHA 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + +   G      G+   L  +E R+L  L    G  +++T I   ++ +
Sbjct: 122 RQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWDI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+ H+ +LR KL +      + + R +GY ++
Sbjct: 182 -NFDSGTNVVDVHMYRLRAKLDDPFSRRLIHTVRGVGYVLE 221


>gi|229042428|ref|ZP_04190174.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229108177|ref|ZP_04237799.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126003|ref|ZP_04255026.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228657428|gb|EEL13243.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228675193|gb|EEL30415.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228726882|gb|EEL78093.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 228

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMP--GMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|187919636|ref|YP_001888667.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718074|gb|ACD19297.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 223

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G +++   +      +      D+  ++  L   G    
Sbjct: 3   ILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLP--GIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E+ R +R    +P+I ++    +   +   + G DD + KP    E++ R+  + RR + 
Sbjct: 61  EIMRALRTRRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGVI 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++  E   +++    R    +G   PL  +E  +L  L+  +G+ +++TQI S ++ +
Sbjct: 121 RESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+  I +LR K+ +      + + R +GY+ 
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDHPFEKKLIHTVRSIGYTF 219


>gi|116873949|ref|YP_850730.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742827|emb|CAK21951.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 225

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+  +        
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFHVLAASDGVEAEKIVENEQIHLAVIDVMMPN--MDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA +  +P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR  
Sbjct: 62  ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGKITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLE 222


>gi|116620224|ref|YP_822380.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223386|gb|ABJ82095.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 231

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +         ++G ++E     +           D+  ++  L  +     
Sbjct: 5   ILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRR--SGF 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + +R     VP++ ++    +   +    SG DD + KP    E+LAR+ A+ RR  
Sbjct: 63  DVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAP 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++    + G I V     +    G+   L  RE R+L YL+ + G+ V +  + + 
Sbjct: 123 VRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQ 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           ++G +    +   V+ H++ LR+KL     +   + + R LGY +
Sbjct: 183 VWG-YSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226


>gi|282866555|ref|ZP_06275598.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558602|gb|EFB64161.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 239

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++    +     G  +                R D+  ++  L         
Sbjct: 11  LVVEDDPSIRTLLTSALHAAGYRVAPAADGREALAETDRCRPDLIVLDVMLPDT--DGFA 68

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R +RA     P++ ++    ++  +    SG DD V KP H +EIL RV AI RR   
Sbjct: 69  VTRELRARGVYTPVLFLTARTEVEDRIIGLSSGGDDYVTKPFHIQEILLRVRAILRRTGG 128

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + V  +       G    L   E R+L  L+++  K + K +I  
Sbjct: 129 PAPVPAERPPLRYADLGVDRERHTVHRGGRPVRLSPTEFRLLVCLVSHPEKVLEKREILQ 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +  A +  +V+++I  LR+K+  + G   + + R +GY +
Sbjct: 189 EVW-QYGFAGDTRIVDTYIKNLRRKIDQE-GPPLIHTVRGVGYCL 231


>gi|299534474|ref|ZP_07047807.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
           ZC1]
 gi|298730102|gb|EFI70644.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
           ZC1]
          Length = 233

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 91/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   + D          +     +  E  ++L+     D+  ++  +        
Sbjct: 4   ILCIDDEPRMLDLLTLYLEPLFLCRAMTSIQEALDFLE-EEHVDLVLLDIMMPE--MNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR    VP+I ++        +   + G DD + KP    E+LAR+ A+ RR   
Sbjct: 61  QVCQEIRKFWDVPIIMLTAKGEHADIVKGLNLGADDYILKPFDEEELLARIHAVLRRTIS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + +  +  +   Q +  PL  +E  +L   +  + +  ++  +  A++G +
Sbjct: 121 EEKVINFEGLCLDRESFEVYFQHKAIPLTPKEFAMLALFLDYQNRAFSREHLIHAVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           D  +E+  ++SH+  LR+KLR       D + +   +GY 
Sbjct: 180 DVTIEDRTIDSHVRNLREKLRKSGFPADDYLQTVWGIGYK 219


>gi|168186993|ref|ZP_02621628.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169295082|gb|EDS77215.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 235

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 17/235 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +        D   +    N LE  E + S+ + D++ I+  +       
Sbjct: 4   ILIADDEEEIIELLSLYLEKDKHCIYSAVNGLEAFE-IISNNKVDIAIIDIMMP--KIDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L + IR    +P+I +S        +   D G DD V KP +  E++ARV A  RR  
Sbjct: 61  YHLIKKIREKYDIPIIMLSAKSEYSDKILGLDLGADDYVTKPFNAMEVVARVNAQLRRYN 120

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     K   +  E G +R+  +            L   E +I+ YL+ N+G+   
Sbjct: 121 KLKKNTYVNLKEKKSYLECGNLRLNINTCTLYKDNVEVYLTSTEYKIISYLLENKGRVFT 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           K QIF  ++       ++N +  HIS LR K+ +       + + R LGY +D N
Sbjct: 181 KKQIFEYVWEEP-FYGDDNAIMVHISNLRDKVEDDSKNPKYIKTIRGLGYKLDAN 234


>gi|107023589|ref|YP_621916.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|105893778|gb|ABF76943.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
          Length = 282

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 43  ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLP--KMSGL 100

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 101 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 160

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 161 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 220

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 221 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRISTVRGLGYCLE 259


>gi|332799755|ref|YP_004461254.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697490|gb|AEE91947.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 228

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 100/226 (44%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG   L    G  L+   ++     + +  + D+  ++  L        
Sbjct: 4   ILLLEDDLSLIDGLSRLLKRQGFELDIARTVREANTIWADGKYDLLILDVSLPD--GSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R  S+VP+I ++        +   D G DD + KP     +++R+ A+ RR+K 
Sbjct: 62  EVCQKVRQVSKVPIIFLTASDEEMNIVTGLDIGGDDYITKPFKLGVLISRINALLRRVKN 121

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++    +  I+V          G++  L   E R+L  LM N    ++K +I   ++
Sbjct: 122 FGTADTEIISNGIKVLLLQGQVYKDGQLLDLTTAEYRLLCLLMQNPNIILSKEKILDKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
                 V++N +  +I +LR K+ N  G    + + R +GY   WN
Sbjct: 182 DGEGSYVDDNTLAVYIRRLRMKIENNPGDPQMLLTVRGMGYK--WN 225


>gi|225026830|ref|ZP_03716022.1| hypothetical protein EUBHAL_01082 [Eubacterium hallii DSM 3353]
 gi|224955837|gb|EEG37046.1| hypothetical protein EUBHAL_01082 [Eubacterium hallii DSM 3353]
          Length = 223

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++       + G S+E F+              D++ ++  L    E   
Sbjct: 4   IYIVEDDTNIQEIEAIALKNSGHSVEQFDDAAHFYKKLEEKLPDLAILDLMLPD--EDGY 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + +R   A  ++P+I ++   S    +   D G DD + KP    E + RV AI RR
Sbjct: 62  EIVKKLRQNPATKKLPVIMVTAKTSEIDMVRGLDIGADDYIKKPFSIIEFITRVKAILRR 121

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +     G I + ++     V  +   L  +E  +L+ LM N G  + + +I   
Sbjct: 122 TLEQPDDKYMTIGDIFLDNERHVVYVDNKGIELTYKEYELLKLLMHNAGIVLTREKIMER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +   E   V+ HI  LRKKL +      + + R +GY ++
Sbjct: 182 VWDT-EFEGESRTVDMHIKTLRKKLGD--SSRHIKTVRNVGYVME 223


>gi|153852940|ref|ZP_01994377.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
 gi|149754582|gb|EDM64513.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
          Length = 235

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 89/234 (38%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G   +     +       +   D+  ++  L G      
Sbjct: 4   ILIVEDDRKIAQLESDYLESNGYETKIIEDGKKALSELKTNHYDLILLDLMLPGC--SGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR    +P++ ++        +     G DD + KP    +++ARV +  +R + 
Sbjct: 62  DICRKIRDEIDIPILMVTARTEGVDVIRGLGLGADDYITKPFDPSQLVARVRSHLKRYER 121

Query: 122 -------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                        +  + +   + +          GE   LP RE  +L +L  N     
Sbjct: 122 LTTRHKEREEKENAQEQIKVEDVVIEPQTWRVWKAGEEVKLPHREFELLVFLAKNPNIVF 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +K  +F  I+G FD   +   V  HI++LR+KL +       +++    GY ++
Sbjct: 182 SKEALFEKIWG-FDYVSDAATVSVHINRLREKLEDDPRDPKIIETVWGAGYRLN 234


>gi|315644524|ref|ZP_07897656.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280031|gb|EFU43328.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 226

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 105/222 (47%), Gaps = 3/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       + G+  E   + +  E L    +  V  +   ++       
Sbjct: 4   ILVVDDDPNIRELVKVFLEEAGME-EILEASDGVEALSVMDQASVDLVVMDIMMPNMDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR ++ +P++ ++     +  +  F+ G DD + KP    E++ RV A+ +R +V
Sbjct: 63  ELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQV 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++    G +++     + +   ++F LP +E  +L  L +  G  + + ++   I+G 
Sbjct: 123 AASQTVNVGKLQMNRRTYEVKTADDIFALPLKEFELLFKLGSYPGSTLTRDRLIEDIWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    E  ++ H+++LR++   +     + + R LGY ++ 
Sbjct: 182 YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLEV 223


>gi|311280342|ref|YP_003942573.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749537|gb|ADO49289.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 223

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D +L+  G I     +G   +G  +        +++   +  ++  L    E  L+
Sbjct: 4   LVVEDDSLLLQGLILAMQSEGYVCDGVTTAHEAALCLANSHYSLMVLDLGLPD--EDGLD 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
              RI R    +P++ ++   ++   ++  D+G DD + KP    E+ ARV A+ RR   
Sbjct: 62  FLSRIRREKFSLPVLILTARDTVNDRIEGLDTGADDYLVKPFALEELNARVRALLRRHNN 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N    G IR+    R   ++     L  +E  +L  LMA  G  V +  +++ IY  
Sbjct: 122 QGDNEISVGNIRINVTRRQVWLEETQLELTPKEYALLSRLMAKAGSPVHREILYNDIY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N +E HI  LR K+    G   + + R  GY +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKI----GKSRIRTVRGFGYML 216


>gi|210617470|ref|ZP_03291592.1| hypothetical protein CLONEX_03814 [Clostridium nexile DSM 1787]
 gi|210149301|gb|EEA80310.1| hypothetical protein CLONEX_03814 [Clostridium nexile DSM 1787]
          Length = 237

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++  G       +G         +  + L      D+  ++  L        
Sbjct: 13  ILVIEDDEMLNAGLCYNLQMEGFEAAPAFGAKTAKKLWKEKSFDLILLDGNLPD--GDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP++ ++     +  ++ F++G DD + KP + + ++ R+ AI RR + 
Sbjct: 71  AVSREIRKESKVPIVFLTARDMDEDMIEGFENGADDYITKPFNIKIVIQRIKAILRRCEG 130

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      + G + V  +    +  G++  L   E ++L     N G+ + +  +   ++
Sbjct: 131 DDTVEKVLQCGNLAVDFESHTVKKHGKLLTLTPTEFKLLHRFCLNPGQVLTRQILLEKLW 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                 V+E+ +  +IS+LR K+ ++  +  + +    GY 
Sbjct: 191 DQDGNFVDEHTLTINISRLRAKIADE-EYAYIKTIYGGGYK 230


>gi|17987612|ref|NP_540246.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|225852137|ref|YP_002732370.1| transcriptional activator protein copR [Brucella melitensis ATCC
           23457]
 gi|256044314|ref|ZP_05447218.1| Transcriptional activator protein copR [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113151|ref|ZP_05454028.1| Transcriptional activator protein copR [Brucella melitensis bv. 3
           str. Ether]
 gi|256264351|ref|ZP_05466883.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260563668|ref|ZP_05834154.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265990726|ref|ZP_06103283.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994564|ref|ZP_06107121.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|17983321|gb|AAL52510.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|225640502|gb|ACO00416.1| Transcriptional activator protein copR [Brucella melitensis ATCC
           23457]
 gi|260153684|gb|EEW88776.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|262765677|gb|EEZ11466.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263001510|gb|EEZ14085.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094644|gb|EEZ18423.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326408637|gb|ADZ65702.1| transcriptional activator protein copR [Brucella melitensis M28]
 gi|326538359|gb|ADZ86574.1| transcriptional activator protein copR [Brucella melitensis M5-90]
          Length = 235

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S +     E    L  +   DV  ++  L  +    L
Sbjct: 3   ILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKR--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +RA   + P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     G + +         Q     L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 PREADTIYRVGDLELDRLTHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEKGFDEPLLHTVRGAGYML 221


>gi|326559342|gb|EGE09769.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 7169]
          Length = 230

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 92/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            +      +         + D+  ++  +   GE  +
Sbjct: 5   ILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMP-HGESGI 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  R ++ +     +P+I ++        +   D+GVDD + KP   RE+++RV A+ RR
Sbjct: 64  DFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVRAVLRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +       + G + + +  +     G    +   E R+L + + +  +   + QI  A
Sbjct: 124 TGIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSERAYTRAQILDA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +  ++E  ++ HI +LRK L        + + R  GY  
Sbjct: 184 VWGG-NVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGYRF 226


>gi|313681083|ref|YP_004058822.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153798|gb|ADR37649.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 235

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +     A  G+ G  ++        + L     +    I   L        
Sbjct: 16  ILIIEDDPEIASLLQAELGEAGYRVDWAPG--GMQGLVKLREDPPHLIVLDLGLPDLDGS 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R  + H  VP+I ++   +++  +     G DD + KP H  E+LAR+    RR + 
Sbjct: 74  EIARRAKQHGDVPIIVLTATDAVERKVQLLLGGADDYLTKPFHPAELLARIQVQLRRGEG 133

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R   G + +  + R     G    L  +E  +LE L +  G+  ++ +I   I+G  
Sbjct: 134 GEVR-RVGDLEIEVETRRVRAGGREVALSPKEFALLELLSSRPGRVFSRDEIARHIWGKP 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E  E NVV+ H++ LR KLR    +  + + R +GY++
Sbjct: 193 LE-TESNVVDVHVANLRAKLREAGAYGYLRTVRGVGYAL 230


>gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8]
 gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans
           A8]
          Length = 242

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +       D+G ++E  ++ +  E ++        A+   L+  G   LE
Sbjct: 8   LIVEDDAHIAELLRLHLRDEGYAVE--HAADGNEGMRRLEEGSWDALVLDLMLPGIDGLE 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + +  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 66  ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSDA 125

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++         + +    R  EV G    L  RE  +L +   +  K  ++  + 
Sbjct: 126 LERNARIDAGSLALHGVSLDPVARTAEVDGRRLDLTPREFDLLHFFARHPDKVYSRMDLL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 186 NQVWG-YQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGKGYKF 231


>gi|255527226|ref|ZP_05394109.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255509090|gb|EET85447.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 235

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +      +   +G   ++ F+     +         +  ++  +       
Sbjct: 9   ILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMVPFV--DG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ R +R  S VP++ IS   +    +     G DD + KP    E + R+ A+ RR  
Sbjct: 67  FEIIRRVRQKSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIRRYI 126

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++  +      + V  +        ++  +   E  IL+  + N  K   K+QI
Sbjct: 127 YFNSEQEMHESAINYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVFTKSQI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +I+G  D    +N V  HI +LR K+  +    + + +   +GY +
Sbjct: 187 YDSIWGQ-DALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYKL 233


>gi|209518321|ref|ZP_03267146.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501240|gb|EEA01271.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 257

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLVRSLRQSAYAVDHVKSGVEADTALSIQTFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR   V  +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLE 219


>gi|218778981|ref|YP_002430299.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760365|gb|ACL02831.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 234

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G+++      E         R D   ++  L  +    +
Sbjct: 8   ILMIEDDQRLAKLTQEYLERNGLAVSLSGDGEAGLQQALQHRFDAIVLDLMLPAR--DGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR HS  P+I ++        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 66  SVCQRIREHSDAPIIMVTARGEEADRVMGLEIGADDYLPKPFSPRELLARIRAMVRRARG 125

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++    G + +        + G    L   E  +L+ L    G+ +++ ++    
Sbjct: 126 QAGPRSSVVVVGDLMLDPAALTAVLDGAPLDLTTYEFALLKALAERAGQVLSRERLMELA 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            G  +EA +   ++ HIS+LR+K+ +       + + R  GY
Sbjct: 186 KGNAEEAFD-RSIDVHISRLRQKIGDDPRHPTRIRTVRGAGY 226


>gi|47094036|ref|ZP_00231766.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226225129|ref|YP_002759236.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254826316|ref|ZP_05231317.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254932174|ref|ZP_05265533.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|47017586|gb|EAL08389.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225877591|emb|CAS06305.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293583731|gb|EFF95763.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293595557|gb|EFG03318.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|328465186|gb|EGF36454.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|332313013|gb|EGJ26108.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes str. Scott A]
          Length = 225

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+  +        
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPN--MDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R ++  +P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR  
Sbjct: 62  ELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLE 222


>gi|134291674|ref|YP_001115443.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134863|gb|ABO59188.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 220

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 106/221 (47%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G      + G++++  +     +    +   D+  ++  L       +E
Sbjct: 4   LLVEDDKLIGSGVEDGLSEAGMTVDWAHDGRHAQLALETTPYDLVVLDLGLPR--MSGVE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L   +R      P++ ++   ++   +    +G DD + KP    E++AR  A+ RR + 
Sbjct: 62  LLAWLRKRRDHTPVLVMTARDTVADRVSGLSAGADDYLGKPFDLTELVARCRALVRRSQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +  E G + V           E   L  RE  +L  L++N+G+ +++ Q+  ++YG 
Sbjct: 122 RSTDTIEYGDLSVDPALMTATRGAERIALTSRECALLVELLSNQGRPLSRAQLQDSLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++E +E N +E H+S LRKKL    G D + + R +GY ++
Sbjct: 181 WNEEIESNAIEVHVSNLRKKL----GADLIRTIRGVGYVVE 217


>gi|270157088|ref|ZP_06185745.1| DNA-binding response regulator PmrA [Legionella longbeachae D-4968]
 gi|289164500|ref|YP_003454638.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Legionella longbeachae NSW150]
 gi|269989113|gb|EEZ95367.1| DNA-binding response regulator PmrA [Legionella longbeachae D-4968]
 gi|288857673|emb|CBJ11516.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Legionella longbeachae NSW150]
          Length = 225

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 9/214 (4%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
            D         G  ++     E       S   ++  ++  L       L L + IR   
Sbjct: 13  GDAVKTGLTQFGYIVDWLKDGEAARAALKSESFELIILDLGLP--KLSGLALLQSIRNDG 70

Query: 72  Q-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETG 129
              P+I ++   S++  +   DSG DD + KP    E+ AR+ A+ RR +  ++   +  
Sbjct: 71  NPTPVIILTARESVEDRVKGLDSGADDYLVKPFDLNELSARIRALVRRSQGRADAVLQYR 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +        V   +  +PRRE  +L+ L+ N G+ +++ Q+  +IYG ++E V+ N 
Sbjct: 131 NITLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG-WEEDVDSNA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +E HI  LRKKL      + + + R +GY  + N
Sbjct: 190 LEVHIHNLRKKL----NANFIRTIRGVGYMAEKN 219


>gi|256826808|ref|YP_003150767.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582951|gb|ACU94085.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 226

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A+   +   ++     +       S   D + ++  L  +     
Sbjct: 3   ILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRR--DGF 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  ++ R  + +P++ ++    ++  ++  D+G DD + KP    E+LAR+ ++ RR  
Sbjct: 61  SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      I +  D  + E +G+   L ++E  I+  LMA   +  +K  + S ++G
Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D    +N VE+++S LRKKL        + + R  GY +
Sbjct: 181 -YDSTAADNNVEAYVSFLRKKLAFIGATTCIVTLRGQGYRL 220


>gi|84394086|ref|ZP_00992821.1| putative two-component response regulator [Vibrio splendidus 12B01]
 gi|84375277|gb|EAP92189.1| putative two-component response regulator [Vibrio splendidus 12B01]
          Length = 243

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G ++E  N++E  + L    + D+  ++  L       L
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHNVERANTIEKAQDLYLDGQFDLVVLDRGLPD--GDGL 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R+IR      P++ ++   +    +   ++GVDD + KP    E  ARV  + RRL 
Sbjct: 70  DFCRMIRQKEDWTPVLMLTARDAELDKVSGLEAGVDDYITKPFSVLEFQARVRNVLRRLS 129

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              +  +           G + +  +     +     PL   E  +L +L    G+  +K
Sbjct: 130 HVESVTQEAMTTESIMNFGGLIIQPERHQVSLNNRDVPLTATEFTLLHFLATRPGRVYSK 189

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   ++     +   + V S +++LR KL       D + +   +GY  +
Sbjct: 190 DELLDHVWNTH-HSGYHHTVCSTVNRLRTKLAMPNSDDDFIKTVWGVGYKFE 240


>gi|119510916|ref|ZP_01630039.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119464444|gb|EAW45358.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 230

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 101/230 (43%), Gaps = 12/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
           +L++D   +              ++   +  E   +L+ S     ++  +  L       
Sbjct: 4   LLVEDEPDLGAAIKRTLTQQKYLVDWVIDGDEAWGYLEDSWTEYTLAIFDWMLP--KISG 61

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL + +R H   +P++ ++   S++  +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LELCKRLRKHQNSLPILMLTAKDSMEDKVTGLDAGADDYLVKPFGMAELLARLRALQRRS 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +    +   G + +         Q      +   L  +E ++LEY M +  + +   QI
Sbjct: 122 PQFQPQKLTVGNLTLDYGNNVVSSQDAVGNVQEITLTYKEFQLLEYFMKHPNQILTTEQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + ++ +  E V  NVV + +  LR+KL N    + +++   LGY  ++N
Sbjct: 182 RNQLWEVNAEPV-SNVVAAQMRLLRRKLVNGGCENMIETLHGLGYRFNFN 230


>gi|284039640|ref|YP_003389570.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283818933|gb|ADB40771.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 225

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             +    ++   + +     + + +   +AI   LI  G    
Sbjct: 3   LLVVEDEPKTLHAIQQGLEESQFEVDI--AYDGLLAKRLALKNTYAAIITDLILPGLNGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL R +RA     P++ ++     +  +  FD+G D  + KP    E+LARV ++ +R  
Sbjct: 61  ELCRQLRAEGVSTPILMLTALDETEDRIQGFDAGADQYLAKPFQFAELLARVRSLTKRGT 120

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + ++      G I +  D +     G+   L  RE  +LE+LM N+G+ ++K  I   +
Sbjct: 121 QVTMTAQMLRYGGIEINLDAKTVTRDGQPIELTAREFALLEFLMRNQGRVLSKPAIAEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + L +     NVVE +I+ LRKK+        + +   +GY  
Sbjct: 181 WDL-NFDTGTNVVEVYINYLRKKIDKGFDKKLIHTHFGMGYMF 222


>gi|228925760|ref|ZP_04088844.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120222|ref|ZP_04249473.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663263|gb|EEL18852.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228833775|gb|EEM79328.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 229

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 9   LLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPE--MDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|283788536|ref|YP_003368401.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282951990|emb|CBG91717.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 226

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 101/219 (46%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    +D       + G  ++   + + +E L+ + +E  + I   ++  G    
Sbjct: 3   ILLIEDNQKTRDWVSQGLSEAGYVVD--QASDGKEGLRFALQESYALIILDIMLPGLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  +Q P+I ++   +++  +   +S  +D + KP    E+LARV A  R    
Sbjct: 61  QVLKALRTANQTPVICLTARDAVEDRVKGLESSANDYLVKPFSFAELLARVRAQLRNHSP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +   + + S  +     G+   L R+E  +L  L +  G+ + +T I S ++G+ 
Sbjct: 121 HHTYLKISGLEMDSVRQSVSRDGKAIVLTRKEFLLLWLLASRAGEIIPRTVIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   E N V+  I +LR K+ +      + + R +GY  
Sbjct: 180 NFDSETNTVDVAIRRLRSKVDDPFDVKLIGTVRGMGYRF 218


>gi|172036640|ref|YP_001803141.1| two-component transcriptional regulatory protein [Cyanothece sp.
           ATCC 51142]
 gi|171698094|gb|ACB51075.1| two-component transcriptional regulatory protein [Cyanothece sp.
           ATCC 51142]
          Length = 237

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +          +    +  ++ L   +  Q  A  D+  ++  L       
Sbjct: 3   ILIVEDEMEIAKIIQTTLERESFDCMVAYDGLTALDLFQQQA-PDLIILDLMLP--KLDG 59

Query: 61  LELPRIIRAHSQV--P-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+   IR       P ++ ++        +    +G DD + KP    E++ARV A+ R
Sbjct: 60  LEVCTRIRQKVNTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLR 119

Query: 118 RL----KVSNNRAETGPIRVFSDGRDPEVQGE-----VFPLPRRERRILEYLMANRGKRV 168
           R        NN  ET    V  D      + E        L   E  +L   M+  G+  
Sbjct: 120 RSLRHGGSQNNVYETPHFMVDLDKHSAVKKLEDNTEDTLELTTLEFNLLSTFMSYPGRVW 179

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++TQ+   ++G  D   +E VV++H+ +LRKK+         + +   +GY  +
Sbjct: 180 SRTQLIDKLWGN-DFFGDERVVDTHVRRLRKKIEPDTANPTFIKTVVGVGYKFE 232


>gi|218903029|ref|YP_002450863.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218538582|gb|ACK90980.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 232

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKV--FSAYNGEEALEIINNNSIQLAILDIMMPQMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + +  IL  + A + +     +I
Sbjct: 124 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTKYDILFLMAAAKNRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|148273675|ref|YP_001223236.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831605|emb|CAN02573.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +    L   +G  ++                 D+  ++  L   G    
Sbjct: 4   IMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVASFDKDGADLILLDLMLP--GLPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++   S    +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCREIRTRSAVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRRVE 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +    N  E G +R+  +    EV G    +P +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 VDDEPLNVLEVGSVRMDVERHTVEVDGREIAMPLKEFELLELLLRNAGRVLTRGQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ HI ++R K+ R       + + R LGY  +
Sbjct: 182 WG-SDYFGDTKTLDVHIKRIRSKIEREPSDPVLLVTVRGLGYRFE 225


>gi|124024919|ref|YP_001014035.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123959987|gb|ABM74770.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 248

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +           L  +   D+  ++  +        
Sbjct: 11  ILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVMMP--KLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRRVEK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++       +++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQIAGLPNSGVIAVMNLKIDTNKRQVYRNDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|27367386|ref|NP_762913.1| response regulator [Vibrio vulnificus CMCP6]
 gi|320159231|ref|YP_004191609.1| DNA-binding heavy metal response regulator [Vibrio vulnificus
           MO6-24/O]
 gi|27358955|gb|AAO07903.1|AE016811_144 Response regulator [Vibrio vulnificus CMCP6]
 gi|319934543|gb|ADV89406.1| DNA-binding heavy metal response regulator [Vibrio vulnificus
           MO6-24/O]
          Length = 231

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 96/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G  +          +  +S R D+  ++  L        
Sbjct: 3   LLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVMLPH--LNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R++    P+I ++    ++  +   + G DD + KP    E+LAR+  + +R +
Sbjct: 61  QVLRALRSNQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQQ 120

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S  R     + +    R      E   L  +E  +LE  M   G+ ++++QI S++
Sbjct: 121 PTTQSTTRLSIANLHLDLLRRKVFRDKEPIALTAKEFALLELFMRKTGEVMSRSQIASSV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + +   + NV++  + +LR K+        + ++R +GY ++
Sbjct: 181 WDM-NFDSDTNVIDVAVRRLRNKVDKPFEPKLIHTERGMGYVLE 223


>gi|317470763|ref|ZP_07930147.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901752|gb|EFV23682.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 245

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +G  +   +N LE  + L     +D+  +   ++  G   
Sbjct: 16  ILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLV---EQDIQLLIIDIMMPGMDG 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L     IR    +P+I +S        +     G DD V+KP    E++ARV +  RR  
Sbjct: 73  LSATMKIRESKNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRRYL 132

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       NR   G + +  DG+   V GE   +   E +IL  LM + G+  +  
Sbjct: 133 QLGSKAAGPEDKNRLILGGLTLDLDGKCIYVDGEPVKVTATEFKILNLLMRHPGRVFSAE 192

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +I+  ++     A E N V  HI ++R+K+  +      +     +GY ++
Sbjct: 193 EIYERVWEEAAYATE-NTVMVHIRRIREKIEIDPKNPKYLKVVWGIGYKME 242


>gi|182437360|ref|YP_001825079.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777970|ref|ZP_08237235.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178465876|dbj|BAG20396.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658303|gb|EGE43149.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 248

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 24  LVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRAARDFRPDAVVLDVMLPD--MDGLS 81

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +  R+ R +  VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 82  VLGRLRREYDDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGS 141

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +    G + +  D  +    G+   +   E  +L +LM N  + ++K QI  
Sbjct: 142 AVAAGRAESTLTVGDLVLDEDSHEVSRGGDAIHVTATEFELLRFLMRNPRRVLSKAQILD 201

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 202 RVWN-YDFGGQANVVELYISYLRKKI-DAGRTPMIHTRRGAGYLI 244


>gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L]
 gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 9   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPE--MDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE +I  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYIHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|29653715|ref|NP_819407.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 493]
 gi|153207221|ref|ZP_01945985.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154705969|ref|YP_001425049.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii Dugway 5J108-111]
 gi|161830581|ref|YP_001596307.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 331]
 gi|165918696|ref|ZP_02218782.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 334]
 gi|212213134|ref|YP_002304070.1| PhoB [Coxiella burnetii CbuG_Q212]
 gi|212218191|ref|YP_002304978.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii CbuK_Q154]
 gi|29540978|gb|AAO89921.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii RSA 493]
 gi|120576709|gb|EAX33333.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154355255|gb|ABS76717.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii Dugway 5J108-111]
 gi|161762448|gb|ABX78090.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 331]
 gi|165917631|gb|EDR36235.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 334]
 gi|212011544|gb|ACJ18925.1| PhoB [Coxiella burnetii CbuG_Q212]
 gi|212012453|gb|ACJ19833.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii CbuK_Q154]
          Length = 248

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++I+D   ++D       D+   L+  ++ +  + L +    D+  ++  L GK G + 
Sbjct: 21  LLIIEDEIAIRDMVRFSLPDEFELLDAEDTAKAIKQLAAQI-PDLILLDWMLPGKSGIEF 79

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E  +       +P++ ++     +  +    SG DD + KP    E++AR+ AI RR  
Sbjct: 80  IEWIKQKEIWQDIPIVLLTAKAEEENKVRGLMSGADDYITKPFSPDELIARIRAILRRGP 139

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L  SN   + G I++ +      V+ E   L   E ++L + M +  K  ++ Q+ + I+
Sbjct: 140 LISSNQEIKIGDIKINTAKHLVTVKDEHIALSPTEYKMLHFFMKHPNKTYSRDQLITYIW 199

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  +++  V+  + +LR KL+       + + R  GY +
Sbjct: 200 GG-NIYIDDRTVDVQVRRLRDKLKKYDHHHLIKTIRGAGYQL 240


>gi|107103873|ref|ZP_01367791.1| hypothetical protein PaerPA_01004944 [Pseudomonas aeruginosa PACS2]
 gi|254238491|ref|ZP_04931814.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa C3719]
 gi|254244323|ref|ZP_04937645.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa 2192]
 gi|313109760|ref|ZP_07795699.1| two-component response regulator [Pseudomonas aeruginosa 39016]
 gi|126170422|gb|EAZ55933.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa C3719]
 gi|126197701|gb|EAZ61764.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa 2192]
 gi|310882201|gb|EFQ40795.1| two-component response regulator [Pseudomonas aeruginosa 39016]
          Length = 221

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  L+ DG  A    +G ++E        E    +   D+  ++  L  +    L
Sbjct: 3   ILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRR--SGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R   +  P++ ++    +   +   DSG DD + KP    E+ ARV A+ RR  
Sbjct: 61  DILRNLRHQGRLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G +R+        + G+   L  RE  +L  L+ N GK +++ Q+  ++YG
Sbjct: 121 GRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   VE N +E H+  LR+KL    G   + + R +GY ID
Sbjct: 181 -WSGDVESNAIEVHVHHLRRKL----GNQLIRTVRGIGYGID 217


>gi|329936872|ref|ZP_08286551.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
 gi|329303797|gb|EGG47681.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
          Length = 236

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++   I+  G  G  ++    L            DV  ++  L   G    E
Sbjct: 10  LVVDDDPGIRRLLISALGFAGFEVDVAGDLTEALEHVDRRPPDVVVLDVMLP--GADGFE 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + +++RA +  VP++ ++   +++  +     G DD V KP    E+ AR+ A+ RR + 
Sbjct: 68  ILQLLRARAVDVPVLFLTARDAVEDRVRGLRLGGDDYVTKPFSVVEVGARLQALLRRARG 127

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E         + +     +    GE   L   E R+L YL++++G+ +++ QI  
Sbjct: 128 GAPAPEETTGLRCADLEIDDPRHEVRRAGEPVDLSPTEYRLLHYLLSHQGQVLSRAQILE 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A++  +D   +  VVE  +S LR+K+        + + R +GY++
Sbjct: 188 AVW-QYDFGGDTVVVERFVSNLRRKIDQGREP-LLHTVRGVGYTL 230


>gi|330810541|ref|YP_004355003.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378649|gb|AEA69999.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G + +  ++         ++   +  ++  L   G   L
Sbjct: 7   ILIVEDEPKLAALMRDYLIAAGYATQCLDNGLQVVPAVRASEPRLILLDLMLP--GRDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R+ S VP+I I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 65  QVCQELRSFSAVPIIMITARVEEVDRLLGLDLGADDYICKPFSPREVVARVKAILRRS-P 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + +  D     + G    L   E R+L  L  + G+  ++ Q+   IY   
Sbjct: 124 QLLVTAPARLLIDEDRYQASLDGVALDLTPLELRLLRTLAQSPGRVFSRDQLLDRIYSDH 183

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
              V +  V+SHI  LR+KL       +P++S   +GY  
Sbjct: 184 -RVVTDRTVDSHIRNLRRKLEQACPAENPIESLYGVGYRF 222


>gi|268610730|ref|ZP_06144457.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 224

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +    +      L      D+  ++  +        
Sbjct: 4   ILVVDDEVNIRKVVREYAEFEGYEVTEAENGMEAVNLCHDNDYDLIIMDVMMPR--LDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I     +P+I +S        L  F+ GVDD V KP   +E++ARV  + +R   
Sbjct: 62  SACKEIHKSKNIPVIMLSARGEEYDKLFGFEIGVDDYVVKPFSPKELMARVKVVLKRSAR 121

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             + A+        + V   GR+  V GE   +  +E  +L YL+ N+   + + ++   
Sbjct: 122 QESDAQLDKYVFEGLEVDISGREVYVNGEKASMTPKEYDLLFYLVKNKNIALTRDKLLEE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  V++HI  LR  L        + + R +GY  +
Sbjct: 182 VWG-YDFFGDDRTVDTHIKMLRNSLGEY--RKFIVTLRGMGYKFE 223


>gi|253575388|ref|ZP_04852726.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845385|gb|EES73395.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 235

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A        +   +S +    L  + + D+  ++  L        
Sbjct: 6   ILIVDDEPSLLHVIKAYLEKQDYLVYETDSGQGALRLFENLQPDLIILDLMLPD--LSGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P++ ++        +     G DD + KP   RE++ARV ++ RR K 
Sbjct: 64  DVCKTIRKKSDIPILMLTAKSGEDDLVHGLLIGADDYLVKPFSPRELMARVISLLRRSKS 123

Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    +   I        +  +  +  V+GE+  L   E ++LE L  +  +  ++ ++ 
Sbjct: 124 AGYTTQEKKISFGGNRLSIDPERHEVTVRGEIVQLTPIEFKLLETLAKHPKRAFSRFELV 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + I G  D    E  ++ HI  +R+K+  +      + +   +GY  
Sbjct: 184 NLIQG-DDFEGMERTIDVHIKNIRQKIGDDPKNPSFIITVYGVGYKF 229


>gi|190576270|ref|YP_001974115.1| putative two-component system response regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014192|emb|CAQ47836.1| putative two-component system response regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 229

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G++ E  +            + D+  ++  L  +    +
Sbjct: 11  ILIVEDEPRLASVLRDYLAAAGMASEWVDDGGQVIDAFVRYQPDLVLLDLMLPQR--DGV 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +RA S VP+I ++        L   + G DD + KP   RE++ARV A+ RR + 
Sbjct: 69  DLCRELRASSDVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVMAVLRRYRP 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +          G+   L   E R+L  L+A  G+  A+ ++   +Y L 
Sbjct: 129 DPGARANGGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLY-LD 187

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              V +  V+SH+  LR+KL +     +P+ S   +GYS +
Sbjct: 188 HRVVVDRTVDSHVRNLRRKLADAGMEGEPIRSVYGMGYSYE 228


>gi|37677144|ref|NP_937540.1| putative two component response regulator transcription regulator
           protein [Vibrio vulnificus YJ016]
 gi|37201689|dbj|BAC97510.1| putative two component response regulator transcription regulator
           protein [Vibrio vulnificus YJ016]
          Length = 231

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 95/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G  +          +  +S R D+  ++  L        
Sbjct: 3   LLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVMLPH--LNGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R+     P+I ++    ++  +   + G DD + KP    E+LAR+  + +R +
Sbjct: 61  QVLRALRSSQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQQ 120

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S  R     + +    R      E   L  +E  +LE  M   G+ ++++QI S++
Sbjct: 121 PTTQSTTRLSIANLHLDLLRRKVFRDKEPIALTAKEFALLELFMRKTGEVMSRSQIASSV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + +   + NV++  + +LR K+        + ++R +GY ++
Sbjct: 181 WDM-NFDSDTNVIDVAVRRLRNKVDKPFEPKLIHTERGMGYVLE 223


>gi|330719359|ref|ZP_08313959.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 232

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +           L    + D   ++  L       +
Sbjct: 4   ILVVDDEQAITTLLQFNLEQNGYHVTIAADGATALQLVEQEQYDAVLLDLMLPEV--DGM 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R +S ++P+I ++        +   + G DD + KP   RE++AR+ A+ RR  
Sbjct: 62  SVLRQMRENSIRIPVILVTAKGDEFDRIFGLEIGADDYITKPFSPREVIARLKAVLRRYH 121

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +              + +    +  +  G+   L  RE  +L Y     G+ + +  I
Sbjct: 122 EQSTNRNDQVGYLTIQDLVIDDARKVVKKDGQTVILTPREYELLLYFAKRIGRVIDRETI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
            ++++G +D   +  +V+ HIS LR+K+        +  + R  GY++
Sbjct: 182 LTSVWG-YDFTGQSRMVDMHISNLREKIEKDPKHPTILKTVRGFGYTM 228


>gi|320184189|gb|EFW59005.1| Two-component system response regulator QseB [Shigella flexneri CDC
           796-83]
          Length = 219

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTTRDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   +  E   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|240136993|ref|YP_002961462.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens AM1]
 gi|254558845|ref|YP_003065940.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens DM4]
 gi|240006959|gb|ACS38185.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens AM1]
 gi|254266123|emb|CAX21875.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens DM4]
          Length = 232

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +  F + G +++          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLP--KLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R  +   P++ +S    +   +    +G DD + KP    E+LAR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  ++E      G + +          G    L  RE R+LEYLM + G+ V +T +  
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 181 HVWD-YHFDPQTNVIDVHVSRLRAKIDRGFEHPMIHTVRGAGYVI 224


>gi|229194886|ref|ZP_04321669.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228588590|gb|EEK46625.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 229

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 9   LLVVEDNASLLESIVQILCDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPE--MDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|261366515|ref|ZP_05979398.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282571787|gb|EFB77322.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 230

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   + +G        G  L    +    E L ++   D+  ++  L        
Sbjct: 4   IFFVEDDLSLINGLSFAIKKQGYELTIARTSVEAEQLWTNGNYDLVILDVTLPD--GSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L R IRA S+VP++ ++        +   D G DD + KP      L+R+ A+ RR   
Sbjct: 62  DLCRKIRASSKVPIMFLTAADEETDIIMGLDIGGDDYMTKPFKLAVFLSRINALLRRSEN 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +    ++  I++    +     G    L   E ++L   M N    ++  QI S 
Sbjct: 122 FNQEQAETELQSNGIQIQLLKQKVIKNGTPLDLTASEYKLLCLFMENPNIILSPEQILSK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           ++   ++ ++ N +  +I +LR K+ +       + + R +GY   WN
Sbjct: 182 LWDCDEKYIDNNTLTVYIRRLRTKVEDNPADPQKIVTVRRMGYK--WN 227


>gi|170754525|ref|YP_001780005.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169119737|gb|ACA43573.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 228

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 89/224 (39%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + ++         +   +    + E         + DV  ++  L   G   L
Sbjct: 4   ILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLP--GVDGL 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R     + +I ++        +   + G DD + KP +  E+  R+ AI RR+ 
Sbjct: 62  EVCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +N    GP ++    +      E   +   E  +++  + N GK   + ++   
Sbjct: 122 AVKESDDNIITGGPFKIDLYSKKIHKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           ++G +D   +  +V+ +I +LR K+         + +    GY 
Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224


>gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 223

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKTEVTVSHEVIEAGEITICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL N    + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLDC 223


>gi|299139099|ref|ZP_07032275.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598779|gb|EFI54941.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 238

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D A +           G   + + ++     +Q + R   +     ++  G   ++L
Sbjct: 7   VLEDDADISRLVQYQLERAGFIAKPYAAI--GSIVQDAERSRPALFLLDIMVPGGDGMDL 64

Query: 64  PRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R +R H   S VP+I ++   S    +   + G DD + KP   RE++ARV A+ RR +
Sbjct: 65  CRRLRQHPTLSGVPVIFLTARASENDRVHGLELGADDYITKPFGTRELVARVRAVLRRFE 124

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S      +  +   I +        V+GE+ P    E R+L+YL  +  +  ++ Q+  
Sbjct: 125 PSEAPGPLSIVKIEEIEIDGSAMQLRVKGELVPTTATEFRLLDYLARHPARVFSRDQLLD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           A++G     V    V+ ++ ++R+K+         + + R  GY  +
Sbjct: 185 AVWGDA-RFVTPRSVDVYVRRIREKVEADPETPRYLKTMRGAGYRFE 230


>gi|260548960|ref|ZP_05823182.1| two-component system DNA-binding response regulator [Acinetobacter
           sp. RUH2624]
 gi|260408128|gb|EEX01599.1| two-component system DNA-binding response regulator [Acinetobacter
           sp. RUH2624]
          Length = 224

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +    L       +E  N+        +  + D+  ++  L       +
Sbjct: 4   ILMIEDDFMIAESTTTLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  V
Sbjct: 62  QVLKQIRQRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   E+G + +  +      +G+   L  RE  IL  LM++  K  +K  +  
Sbjct: 122 EAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 182 KLYD-FDSDVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 221


>gi|228961087|ref|ZP_04122714.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798632|gb|EEM45618.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 229

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 12/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++      
Sbjct: 4   IILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    K
Sbjct: 62  WSVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRK 121

Query: 121 VS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           V+       ++      I V    R   V      L   E  IL Y + N+G  + + Q+
Sbjct: 122 VTKQLLENEDDILSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFIKNQGIVLTREQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 182 ISRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|190891005|ref|YP_001977547.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696284|gb|ACE90369.1| two-component response regulator protein [Rhizobium etli CIAT 652]
          Length = 251

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ S    DV  I+  L  +    L
Sbjct: 29  ILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRR--DGL 86

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 87  SVISELRRKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 147 TPEQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 207 D-YHFDPQTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 247


>gi|322421546|ref|YP_004200769.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M18]
 gi|320127933|gb|ADW15493.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M18]
          Length = 224

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +       ++G S++  N+ E    L  +   D+  ++  L  KG    
Sbjct: 3   ILIIEDEQKAANYLKKGLSENGFSVDIANNGEDGLHLAMTEAYDLIILDVMLPIKG--GW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A + VP+I +S   ++   +   + G DD + KP    E+LAR+  I RR  
Sbjct: 61  AIIKELRDAGNDVPVIFLSARDAVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRHP 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   +   + +          G    L  +E ++L  ++  RG+ + +T I   ++G
Sbjct: 121 LQQSELLKMADLELDLIRHKARRGGHSLDLTVKEFQLLALMLRRRGEVLTRTTISEQVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVV+  I +LRKK+ +      + + R +GY ID
Sbjct: 181 I-NFDSDTNVVDVAIRRLRKKVDDPFPLKLIHTIRGVGYVID 221


>gi|261345195|ref|ZP_05972839.1| QseB protein [Providencia rustigianii DSM 4541]
 gi|282566888|gb|EFB72423.1| QseB protein [Providencia rustigianii DSM 4541]
          Length = 219

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG        G +++ F   +  +     A  D   ++  L       +
Sbjct: 3   ILLVEDDRLIGDGLKVGLTQLGFTMDWFMDGKQGQQALFDAPYDAVILDLSLPN--IDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +  R      P++ ++   +L   +     G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILKYWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALMEVAARLQALIRRRS 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + +         QG+   L  +E  +L   + N  K ++++ I   +Y 
Sbjct: 121 GQLSPTLIHGDVEMDPQAMTVTCQGKPVQLKGKELALLSLFLHNPKKVLSRSLIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LR+KL  K     + +   +GY +
Sbjct: 181 -WDEEVSSNSVEVHIHHLRRKLGAKF----IQTVHGVGYRL 216


>gi|226330499|ref|ZP_03806017.1| hypothetical protein PROPEN_04417 [Proteus penneri ATCC 35198]
 gi|225201294|gb|EEG83648.1| hypothetical protein PROPEN_04417 [Proteus penneri ATCC 35198]
          Length = 224

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L++      F D G  ++     +  +   +    DV+ ++  L    E  +
Sbjct: 3   ILIIEDNILLRHHLSVQFRDAGHQVDAAEDAKEADSFIAEGTPDVAIVDLGLPD--EDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R ++  +P++ ++   S Q  +   ++G DD V KP H  EI+AR+ A+ RR +
Sbjct: 61  SLIRRWRENNITLPIMVLTARESWQEKVSALNAGADDYVTKPFHFEEIIARIQALMRRNM 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    ++  + GE   L   E  ILE LM N+ K V+K  +   +Y 
Sbjct: 121 GIASQTLAIEPFELDLSRKEFMISGEQIKLTAFEYTILETLMRNQNKVVSKDALMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK+  K   D V + R  GY  D
Sbjct: 180 PDAELKESHTIDVLMGRLRKKILEKYPDDVVVTVRGQGYRFD 221


>gi|74058492|gb|AAZ98835.1| VanRD [Enterococcus gallinarum]
          Length = 232

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 96/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F +         S   D++ ++  L        
Sbjct: 5   ILVVDDEKELADLVEVYLKNDGYTVYKFYNGTDALKCIESTPLDLAILDIMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
           ++ + IR     P+I ++        +       DD + KP +  E++ARV A  R   R
Sbjct: 63  QICQKIREKFYFPVIMLTAKVEDGDKIMGLSI-ADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 119 LKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +  +       +  +   + +  +     + G+   L   E  IL YL  N+GK V+  
Sbjct: 122 YRQPHFKQEDERSEYDIRGMTISKNSHKCILFGKELQLTPTEFSILWYLCENQGKVVSTE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           ++F A++G        N V +HI +LR+K++        + +   +GY+I+
Sbjct: 182 ELFEAVWGEK-YMDNNNTVMAHIGRLREKMKERAKNPKFIKTVWGVGYTIE 231


>gi|170684671|ref|ZP_02875896.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|254685761|ref|ZP_05149620.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|170670931|gb|EDT21669.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 224

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +  S++   + E      + A  D+  ++  +   G   L+
Sbjct: 4   LIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIP--GINGLQ 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +RA +    ++ ++   ++   +   D G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLQKLRADNHTTSVLLLTAKDTIDGRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   + V  +        +V  L  +E  ILEY++ N+   + + +I   ++  
Sbjct: 122 NTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D     N+++ ++  LRKK+ ++     + + R  GY +
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 220


>gi|163842887|ref|YP_001627291.1| transcriptional activator protein copR [Brucella suis ATCC 23445]
 gi|163673610|gb|ABY37721.1| Transcriptional activator protein copR [Brucella suis ATCC 23445]
          Length = 235

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S +     E    L  +   DV  ++  L  +    L
Sbjct: 3   ILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKR--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +RA   + P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     G + +         Q     L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 N-YHFDPQTNVIDVHISRLRSKIEKGFDEPLLHTVRGAGYML 221


>gi|70733706|ref|YP_257346.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68348005|gb|AAY95611.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 226

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A          G+ G +++   +     +       D+  ++  L   G    
Sbjct: 3   LLVVEDEAKTAHFLAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVMLP--GLNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L +++R     P++ ++   +++  +   + G DD + KP    E+LARV  + RR  +
Sbjct: 61  QLLQLVRQRGATPVLFLTARDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGPL 120

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     + +    R     G+   L  +E  +L  L + +G+ +++T I S ++ L
Sbjct: 121 REAESFSIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWNL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + N+VE  + +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNMVEVAVRRLRAKVDDPYMPKLIHTVRGVGYQLE 220


>gi|330940506|gb|EGH43585.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 224

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPE--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R      ++ ++    L+  +   + G DD + KP    E+LARV  + RR + 
Sbjct: 61  EVLSRLRKTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++     + G + +           +   L  +E  +L  LM + G+ ++ TQI S ++ 
Sbjct: 121 TSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSPTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|302527318|ref|ZP_07279660.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302436213|gb|EFL08029.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 230

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++           ++             +  R D+  ++  +       L
Sbjct: 10  LLVVDDEPAVREALTDALETQSYAVHTACDGAEALRAVADLRPDLILLDVMMPA--LDGL 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A  + P++ ++   + Q  +D  D+G DD V KP    E+ AR+ A+ RR +
Sbjct: 68  AVCRALRSAGDRTPIVALTARTAAQDRIDGLDAGADDYVLKPYDLGELFARIRALLRRTR 127

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V  +R     + +    R       V      E  +L  L+ N G+ + +  I   ++G
Sbjct: 128 DVGGDRLAFADLTLDEATRQGVRGSRVIQFSETEFALLALLVRNAGQVLTREIITDRVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N V+ ++  LR+KL        V + R +GY +
Sbjct: 188 -YDFGPSSNSVDVYVRYLRRKLEADGEPRLVHTVRGIGYQL 227


>gi|118587757|ref|ZP_01545167.1| two component transcriptional regulator, winged helix family
           protein [Stappia aggregata IAM 12614]
 gi|118439379|gb|EAV46010.1| two component transcriptional regulator, winged helix family
           protein [Stappia aggregata IAM 12614]
          Length = 228

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +    + G + +          +      D+  ++  L       L
Sbjct: 4   ILVIEDDPEAASYLVKGLSELGHTADQAADGPAGLDMALDRDYDILIVDRMLP--KMDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ +S    +   +    +G DD + KP    E+LAR+ A+ RR K
Sbjct: 62  SVIQELRRQGNHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELLARIEALARRPK 121

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++    T   G + +              PL  RE R+LEYLM N G+ V +T +   +
Sbjct: 122 SASQIETTYTVGDLTLDRMAHSCRRGETEIPLQPREFRLLEYLMQNAGQVVTRTMLLENV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR K+        + + R  GY+I
Sbjct: 182 W-EYHFDPQTNVIDVHISRLRGKIDKGFDTPLLHTIRGAGYTI 223


>gi|39998037|ref|NP_953988.1| DNA-binding heavy metal response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984982|gb|AAR36338.1| DNA-binding heavy metal response regulator [Geobacter
           sulfurreducens PCA]
 gi|298506979|gb|ADI85702.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter sulfurreducens KN400]
          Length = 223

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D           F ++G + +   S +    L  +   D+  ++  L   G    E
Sbjct: 4   LIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLARTENYDLIILDIMLP--GRDGWE 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +   +R   S+VP+I +S   ++   +   + G DD + KP    E+LAR   I RR   
Sbjct: 62  VLEELRKEGSEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSELLARARTILRRGPS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R     + +   G     +G    L  +E  +L  L+  +G+ +++T I   ++G+
Sbjct: 122 RQPERLRADDLEMDLVGHKARREGRPIDLTAKEFILLSLLLRRKGEVLSRTLIAEQVWGI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + N+V+  I +LR+K+ +      + + R  GY ++
Sbjct: 182 -NFDSDTNIVDVAIRRLRRKVDDPFERKLIHTVRGAGYVLE 221


>gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu009]
 gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu011]
 gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu009]
 gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu011]
          Length = 240

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +           R D   ++  +   G     
Sbjct: 17  LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMP--GMDGFG 74

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 75  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N      R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 195 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 236


>gi|168185395|ref|ZP_02620030.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169296276|gb|EDS78409.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 222

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++      F     S+           +      D+  ++  +        
Sbjct: 3   ILIIEDEERMRKLLRDYFNRSEFSVLEAEDGVKALKVFKENSVDIVILDIMIPY--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + + IR +S+VP+I ++     +  L  ++ G DD V KP   + ++A+V A+ +R   
Sbjct: 61  TVCKSIRQNSKVPIIMLTAKGEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRSVV 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   N      + +     + ++ G++  L  +E  +L +   N    +++  I   ++
Sbjct: 121 EQKETNIKNYNGLEINKLSNEVKIDGDIVNLSPKEYDLLIFFANNIDIVLSRDIILDKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G FD       V++H+ +LR+KL+ K     + + R  GY  + +
Sbjct: 181 G-FDYEGGLRTVDTHVKRLREKLKEK--AKFIVTVRGKGYKFEVD 222


>gi|65318077|ref|ZP_00391036.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 225

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWNEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NXNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|325571361|ref|ZP_08146861.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755]
 gi|325155837|gb|EGC68033.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755]
          Length = 231

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E F               DV+ ++  L        
Sbjct: 5   IIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR     P++ ++        +     G DD V KP +  E++ARV    RR + 
Sbjct: 63  QLLQTIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  A        E   + +  +     + G+   L   E +IL YL  ++G  VA   +
Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCYLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F A++         N V +HI++LR+KL         + +   +GY I+
Sbjct: 183 FEAVWKEK-YLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIE 230


>gi|227543824|ref|ZP_03973873.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908892|ref|ZP_07126355.1| response regulator [Lactobacillus reuteri SD2112]
 gi|227186201|gb|EEI66272.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894299|gb|EFK87657.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 237

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   +  ++  E    L ++    +  ++  +       
Sbjct: 11  ILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPE--IDG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 69  MDVIKRVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 128

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    GP+ +  D  +   ++G+V  L   E  IL  L ++  +  +   IF
Sbjct: 129 GEVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIF 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ++
Sbjct: 189 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 235


>gi|171743213|ref|ZP_02919020.1| hypothetical protein BIFDEN_02341 [Bifidobacterium dentium ATCC
           27678]
 gi|171278827|gb|EDT46488.1| hypothetical protein BIFDEN_02341 [Bifidobacterium dentium ATCC
           27678]
          Length = 225

 Score =  222 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 16/227 (7%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G +    +         +  R D+  ++  L       LE 
Sbjct: 2   VVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIMLPV--MDGLEA 59

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
            + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR+  + 
Sbjct: 60  TKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRAK 119

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       + G + +    R   V GE   L   E  +L  L       + + ++ 
Sbjct: 120 VIAKNSENEKILDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKLL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++   D +     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 180 EEVWDWVDASG-TRTVDSHVKALRHKL----GSQTIRTVHGVGYAFE 221


>gi|229083888|ref|ZP_04216195.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228699409|gb|EEL52087.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 230

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +    +++  +E +    ++    I   ++       
Sbjct: 4   ILLVDDEPRMLELLTLYLTPRGYNC--ISAISGQEAISYIEKQSFKFILLDIMMPEMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR+ S VP+I ++        +     G DD + KP H  E+LAR+ A+ RR   
Sbjct: 62  ETCRKIRSFSNVPIIMVTARDQTIDVVQGLKIGADDYITKPFHEDELLARIEAVLRRSNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   I          V G+   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 H-ELIQYKGILWDEAKHFISVHGQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           D   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 DATTEDRTVDSHIRNLRDKLRKAKFPIDEHLKTVYGVGYR 219


>gi|254519614|ref|ZP_05131670.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913363|gb|EEH98564.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 234

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 94/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       + G ++  F      E L+  ++E++      ++      + 
Sbjct: 7   LVVEDEKEIADAIEIYLKNQGYNV--FKGYNGIEGLEIISKEEIHLAIVDIMMPRMDGIA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR    
Sbjct: 65  MTMKLREKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPLELLARVNSQLRRYSKF 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  K  +N    G + +  D  +  V G    +   E +IL  LM N G+  +  +
Sbjct: 125 LSLVGVEKEKSNSFVIGGLELNVDTVELTVDGNPVKITPIEFKILHLLMQNPGRVFSPEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   ++A+  + +  H+  +R+K+  N      +     +GY I+
Sbjct: 185 IYERVWN--EQAINTDTIMVHVRNIREKIEINPKNPKYLKVVWGVGYKIE 232


>gi|261366093|ref|ZP_05978976.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
 gi|282572094|gb|EFB77629.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
          Length = 224

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +    +        S++   +        +    D   ++  L   G   L
Sbjct: 3   ILVVEDQPEMNALLVKQLKAAQYSVDSCLTGTDALDYLAGGEYDAVILDIMLP--GVDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P++ ++    +   +   DSG DD + KP   +E+LAR+  + RR  
Sbjct: 61  EVLRRRRAAGDKTPVLLLTARDGIDDRVRGLDSGADDYLVKPFALQELLARLRVLIRRRA 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++      ++V    R     G+   L  +E  +LEYL  N G  +++ +I   ++ 
Sbjct: 121 DQVSDVITVADLQVDCIARTASRGGQGIALSAKEFAVLEYLARNAGVVLSRERISQGVWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVV+ +I  LRKK+        + + R +GY +
Sbjct: 181 -YDYEGGSNVVDVYIRYLRKKIDEGRQPKLIHTVRSVGYVL 220


>gi|310641893|ref|YP_003946651.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309246843|gb|ADO56410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus polymyxa SC2]
          Length = 237

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          +G  +E   +         +   D+  ++  L       +E
Sbjct: 6   LVIDDEEKISRLLQLELSHEGYVVEIAQTGREGLEKALAHTWDIIILDVMLPE--INGVE 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117
           + + IR   +  P+I ++   +    +   D G +D + KP    E+LAR+ A  R    
Sbjct: 64  VLKQIRKVDNHTPIIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRNQLE 123

Query: 118 -------RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                  +     ++ +   + +    R    +G+   L  +E  +L YLM ++ + + +
Sbjct: 124 PAATASPKEDKQQSKLQVDSLVLEPKTRSVVREGKRIELTPKEFDLLLYLMEHKNQVLHR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   ++G FD   + NVV+ +I  +RKK+ +      + + R +GY I
Sbjct: 184 DQMIQDVWG-FDFVGDTNVVDVYIRYVRKKIDHGYKKKLIKTVRGVGYCI 232


>gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL N    + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLDC 223


>gi|72383336|ref|YP_292691.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72003186|gb|AAZ58988.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 248

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +           L  +   D+  ++  +        
Sbjct: 11  ILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVMMP--KLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++       +++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQIAGLPNSGVIAVMNLKIDTNKRQVYRNDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|30248529|ref|NP_840599.1| response regulator baeR [Nitrosomonas europaea ATCC 19718]
 gi|30138415|emb|CAD84425.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 229

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +           G         LE   WL+ +    V  I   L+  G   
Sbjct: 4   ILIVEDEPRLARLEADYLQHAGFQTHCLSQGLEVIPWLKENT---VELILLDLMVPGRDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R IR+ SQVP+I ++        L   + G DD + KP   RE++ARV A+ RRL+
Sbjct: 61  LDICRDIRSFSQVPVIIVTARIEEIDRLLGLEMGADDYICKPFSPREMVARVKAVLRRLQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                +    + +       +  G    L   E ++L  L    G+  ++ ++   IY  
Sbjct: 121 PPAPNSAQQALTLSPQSFKVQYDGREIELTAVEFQLLYTLYQQPGRIFSRARLMDLIY-Q 179

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
               V +  ++SHI KLRKK+       + + S    GY  D
Sbjct: 180 DQRIVSDRTIDSHIKKLRKKIAELIPEKEVICSVYGAGYRYD 221


>gi|89076752|ref|ZP_01163030.1| putative transcriptional regulatory protein PhoP [Photobacterium
           sp. SKA34]
 gi|89047591|gb|EAR53203.1| putative transcriptional regulatory protein PhoP [Photobacterium
           sp. SKA34]
          Length = 224

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 105/224 (46%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++     +   + G  ++  N+ E   +   +   D++ ++  L  +    +
Sbjct: 3   ILIVEDDAILSHHLKSQLSELGNQVQCANTAEEGLFFAENYPNDIAIVDIGLPDR--DGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R    ++P++ ++   + Q  +   ++G DD + KP    E++AR++A+ RR  
Sbjct: 61  SLIKDMRKKGLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G IRV    +   V   +  L   E  +LEYLM +  + V+K ++   +Y 
Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVYVHEILLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D+  + N +E  IS+LRKK       +P+ + R  GY  + N
Sbjct: 180 -EDQEGDPNTIEVMISRLRKKFTKTGQENPISTIRGQGYIFELN 222


>gi|218901766|ref|YP_002449600.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539476|gb|ACK91874.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 3   LLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPE--MDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|38232699|ref|NP_938466.1| putative two-component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38198957|emb|CAE48572.1| Putative two-component system response regulator [Corynebacterium
           diphtheriae]
          Length = 240

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPE--LDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 133

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V+  +  L R E  +L  L    G+ + +  + + 
Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVRVEETIVELTRTEFELLVALALRPGQALTRHDLVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRM 237


>gi|116513986|ref|YP_812892.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093301|gb|ABJ58454.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325125674|gb|ADY85004.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal precursor [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 225

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +++  +         + GF   +       ++R D+  ++  L    E   
Sbjct: 4   IWCVEDDESIREIEMYTLESMNFKVRGFEDGQSFFKALDNSRPDLVILDLMLPD--EDGS 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   +R+ S    +P+I  S   +    +   DSG DD + KP    E+++RV A+ RR
Sbjct: 62  EILHRLRSTSATEDLPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRR 121

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   ++ E   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I
Sbjct: 122 TNRKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +       E   V+ H+  LR+KL        +++ R +GY 
Sbjct: 182 WETG-FYGETRTVDVHVRTLRQKLGEAG--KHIETVRGVGYR 220


>gi|329736115|gb|EGG72388.1| putative transcriptional regulatory protein WalR [Staphylococcus
           epidermidis VCU045]
          Length = 219

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 11/208 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   + D        +G  +           L      D+  ++  L   G   +E
Sbjct: 6   VVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLP--GRDGME 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R   ++P+I ++   S    +   + G DD V KP   RE++ARV A  RR    
Sbjct: 64  VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               +  + N      I ++ D    + +GE   L  RE  +  YL  + G+ + +  + 
Sbjct: 124 PAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR 202
             ++G +D   +   V+  I +LR+KL+
Sbjct: 184 QTVWG-YDYFGDVRTVDVTIRRLREKLK 210


>gi|329896136|ref|ZP_08271349.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium IMCC3088]
 gi|328921955|gb|EGG29320.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium IMCC3088]
          Length = 214

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 9/217 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D   +  G ++    +G  ++  +S    E    +   D+  ++  L       L+L  
Sbjct: 2   EDEHSLAQGVVSGLEREGFVVDWVDSGRLAETAVKADPPDIMVLDLGLGD--MDGLDLLA 59

Query: 66  IIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
            IR    + P++ ++    +   +   D+G DD + KP    E+ AR+  + RRL   S 
Sbjct: 60  SIRQKKHRFPILILTARGEVDDKVKGLDAGADDYMAKPFDFLELCARLRVLERRLGTAST 119

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +      + +  +    EV G+   LPRRE  +L+ LM N+G+ V + Q+ S +Y   DE
Sbjct: 120 STISISNVVLHINTHQVEVGGKDLDLPRREYMLLKCLMENQGRVVTRDQLESRLYHWGDE 179

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  N +E H+  LRKKL +      + + R LGY++
Sbjct: 180 -ISSNALEVHVHHLRKKLPDAF----IKTIRGLGYTV 211


>gi|302335808|ref|YP_003801015.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301319648|gb|ADK68135.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 231

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 84/219 (38%), Gaps = 3/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D    L G +G+  +  +  E      +     +  ++  +   G    E
Sbjct: 6   LVVDDSREIADLVTTLLGAEGIHADACHDGESALERFAERGYGLVILDIMMP--GLDGWE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ +S        +  F    DD + KP    E++ARV A  RR    
Sbjct: 64  VCRRIRRTSAVPVLFLSAKSEEMDVVRGFSLDADDYITKPFKPFELIARVKARLRRAARP 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       I +        +      L  +E  ILE L+ N G+ V    I+  ++    
Sbjct: 124 DGILCAQGIALEPLTHRATLHDLELSLTPKEFGILELLLRNAGRPVPNRMIYEEVWRDAY 183

Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                N V  HI  LR KL        P+ +   +GY +
Sbjct: 184 LPSANNTVMVHIRNLRHKLAGIDSSAHPIQTVWGVGYRV 222


>gi|196041400|ref|ZP_03108693.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027648|gb|EDX66262.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 229

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +  F + + +E L     E+V  +   ++       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVV--FEARDGKEALVVFEEEEVDLVILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +    KV
Sbjct: 63  SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       ++      I V    R   V      L   E  IL Y M N G  + + Q+ 
Sbjct: 123 TKQLLENEDDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNLGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|157147945|ref|YP_001455264.1| DNA-binding transcriptional regulator BasR [Citrobacter koseri ATCC
           BAA-895]
 gi|157085150|gb|ABV14828.1| hypothetical protein CKO_03752 [Citrobacter koseri ATCC BAA-895]
          Length = 222

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHCLETGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHH 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELTVGNLMLNLGRRQVWLAGQELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|291523295|emb|CBK81588.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +   +    +   +      +            +  ++  +       +
Sbjct: 3   ILLIEDDIEISEMLCSYLIAENFEVVCATDGQKACEAFDIGFYSIVLLDLMIP--KITGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + + IR  S VP+I IS   S          G DD + KP    E++AR+ A  RR   
Sbjct: 61  NVMKYIRQKSTVPIIIISAKDSDSDKTLGLGLGADDYITKPFSITEVMARIKANIRRNTE 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              ++    +   GP+ +  +       GE+  L  +E  IL  L+ N  +   K QI+S
Sbjct: 121 YAAVQPEQTKLVWGPLVMNLENHTVTKSGEIIELTAKEFDILRLLLENPQRVYTKAQIYS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            I+       +EN V  HIS+LR K+ +       V +   +GY +
Sbjct: 181 LIWNDA-YMGDENAVNVHISRLRTKIEDDPRKPQVVITVWGIGYKL 225


>gi|260663755|ref|ZP_05864642.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|260551704|gb|EEX24821.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 245

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   +  +N  +    L +    D+S +   L+      
Sbjct: 19  ILIVDDDKEIVQLLEIYARNEGYEPVSAYNGKDAITKLNTM--PDISLVILDLMMPEMNG 76

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 77  MDVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 136

Query: 121 VS-----NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    GP+ +  D  +   ++G+   L   E  IL  L ++  +  +   IF
Sbjct: 137 NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGILYLLASHPNRVFSADDIF 196

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   +++   +GY ++
Sbjct: 197 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEVATGGEKVIETVWGVGYKVE 243


>gi|253702308|ref|YP_003023497.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M21]
 gi|251777158|gb|ACT19739.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M21]
          Length = 224

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       ++G S++  N  E    L  +    +  ++  L  +G    
Sbjct: 3   ILIVEDEQKAANYLKKGLTENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRG--GW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA  + VP+I +S    +   +   + G DD + KP    E+LAR+  I RR  
Sbjct: 61  SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRCP 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  + + +   + +          G    L  +E ++L  ++   G+ +++T I   ++G
Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLRRHGEVLSRTTISEQVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVV+  I +LRKK+ +      + + R +GY +D
Sbjct: 181 I-NFDTDTNVVDVAIRRLRKKVDDPFPVKLIQTIRGVGYVLD 221


>gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC
           19977]
 gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus]
          Length = 249

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +   +   +       L      DV  ++  L   G   +E
Sbjct: 19  LVVDDEVPLAEVVASYLKRESFEVHLAHDGRRALDLAREVDPDVVILDIGLP--GVDGIE 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++ARV A+ RR + +
Sbjct: 77  VCRQLRVFSDAYVVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRRPRRA 136

Query: 123 NNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G +R+  DGR+  V      L R E  +L  L +  G  +++ 
Sbjct: 137 PESPAAVTPELSPPRVFGALRINVDGREVHVGERPVTLTRTEFDVLAALSSRPGIVLSRK 196

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+   ++G       +N+V+ H+  LR+KL +       V + R +GY +
Sbjct: 197 QLLDTVWGDT-WVGNDNIVDVHVGHLRQKLGDSPSQPRYVMTVRGVGYRM 245


>gi|126728700|ref|ZP_01744515.1| probable two-component response regulator protein [Sagittula
           stellata E-37]
 gi|126710630|gb|EBA09681.1| probable two-component response regulator protein [Sagittula
           stellata E-37]
          Length = 225

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   V D  +A   + G S++  +  +  + L      D        +  G   L
Sbjct: 3   IMLAEDDTKVADYIVAGLSEHGHSVD--HVADGRDALSYLLYNDCDLAILDRMLPGMDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + +RA    +P++ ++    +   ++   +G DD + KP H  E++AR+ AI RR  
Sbjct: 61  SVLKALRASKKSLPVLFLTAMGQVDDRVEGLAAGSDDYLTKPFHFSELVARIDAIVRRKT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + +    R    QG V  L  +E  ILE LM N G+ V +T +   ++
Sbjct: 121 ETRAEPVLTVHDLTLDLLARTATRQGTVMELHSKEFAILEILMRNSGRVVTRTLLLERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F+      VVE+H+S+LR K+        + + R  GYS+
Sbjct: 181 N-FNFDPNTTVVETHMSRLRAKVDKPFETPLIHTIRNTGYSM 221


>gi|40021671|gb|AAR37056.1| VanRD5 [Enterococcus faecium]
          Length = 232

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F + +       S   D++ ++  L        
Sbjct: 5   ILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDV--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
           ++ + IR     P+I ++        +       DD + KP +  E++ARV A  R   R
Sbjct: 63  QICQKIREKFYFPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 119 LKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            K  +          +   + +        + G+   L   E  IL YL   +G  V+  
Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++F A++G        N V +HI +LR+K++        + +   +GY+I+
Sbjct: 182 ELFEAVWGER-YFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIE 231


>gi|300172950|ref|YP_003772116.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Leuconostoc gasicomitatum LMG 18811]
 gi|299887329|emb|CBL91297.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Leuconostoc gasicomitatum LMG 18811]
          Length = 229

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +      +    L      D   ++  L       +
Sbjct: 4   ILVVDDEPAISTLLKYNLEQNGYQVTIATDGQSAYELIGEQTFDAILLDLMLPV--MDGM 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++        +   + G DD + KP   RE+LAR+ A+ RR +
Sbjct: 62  TVLKNLRQDKIATPVLLVTAKGDEFDRVFGLELGADDYITKPFSLREVLARLKAVLRRSQ 121

Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +        E   I +  + +     G+   L  RE  +L Y     G+ + +  I 
Sbjct: 122 TERSTSDKPDVIEIQDIVIDDNKKVVTKSGKNLTLTPREYELLLYFSQRVGRVIDRETIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +A++G ++   E  +V+ HIS LR+K+ N      +  + R  GY++
Sbjct: 182 TAVWG-YEFVGESRMVDMHISNLREKVENNPKSPQILKTVRGFGYTM 227


>gi|94970088|ref|YP_592136.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552138|gb|ABF42062.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 229

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G S+E   + E      +    D+  ++  L  +     
Sbjct: 5   ILLIEDEEALLTTLTDRLRAEGYSVEVARNGEEGYHHGTRNVFDLIILDIQLPKR--NGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR A    P++ ++    L   +     G DD + KP    E++AR+ A+ RR  
Sbjct: 63  DVCRDIRQAGVATPILMLTARGQLVDKVVGLKIGADDYMTKPFEMIELMARIEALLRRSP 122

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         + G +RV   G +   +G+   L  RE ++L YL+ NRGK V++ ++   
Sbjct: 123 MRPPEKEEVQQFGDLRVDLRGTEVTREGKPVALSAREFQLLRYLLENRGKTVSRGELLKE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G +  +     V+ HI+ LR+K+  +      V +   LGY  
Sbjct: 183 VWG-YSASTYTRTVDMHIASLRQKIEPDPKQPQWVHTVPGLGYKF 226


>gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 221

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +++   A    +G  +    + +  E L    +  +  ++  L        E
Sbjct: 5   LLVDDDPAIREVLSAYLRQEGYEV--VEAADGLEALGKIPQASLVVLDLMLPR--LSGWE 60

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R  + ++P++ ++     +  +   D G DD V KP   RE++ARV A+ RR  +
Sbjct: 61  VARELRRDYPELPVLMLTAKGEEEERIRGLDLGADDYVTKPFSPREVVARVRALLRRSGL 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +    R+  + GE   L + E  +L  L  +     ++ ++   ++G  
Sbjct: 121 -KAELAFGELVIRPREREAYLAGEPLALSKLEFDLLLTLAQHPRLVWSRERLLERVWGT- 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           D    + VV+ HI+ LRKKL         +++ R +GY  
Sbjct: 179 DFPGVDRVVDVHIAGLRKKLGEDGDNPRYIETVRGVGYRF 218


>gi|291540888|emb|CBL13999.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 228

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L DD +L+ +G    F   G  L    +L+  E L +  + D+  ++  L       
Sbjct: 4   ILLLEDDLSLI-NGLSFAFKKQGFELNIARTLKEAEKLWTDGKYDLLVLDVSLPD--GSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E  + +R  S+VP+I ++      + +   D G DD + KP     +++R+ A+ RR  
Sbjct: 61  FEFCKRVRLTSKVPIIFLTASDEETSIIMGLDIGGDDYITKPFKLGVLVSRINALLRRAN 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + ++   ++  I+V          GE+  L   E ++L   M N    + K QI   +
Sbjct: 121 SFQAADTELQSNGIKVLLLQGQVFKNGELLDLTAAEYKLLCLFMRNPSMVLTKGQILDKL 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +      ++ + +  ++ +LR K+ +       + + R +GY   WN
Sbjct: 181 WDCDGNYIDSSTLTVYMRRLRMKIEDNPSEPQMLLTVRGMGYK--WN 225


>gi|222159810|gb|ACM47283.1| response regulator VanRD [Enterococcus faecium]
          Length = 232

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F + +       S   D++ ++  L        
Sbjct: 5   ILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDV--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
           ++ + IR     P+I ++        +       DD + KP +  E++ARV A  R   R
Sbjct: 63  QICQKIREKFYFPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEMVARVKAQLRQYMR 121

Query: 119 LKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            K  +          +   + +        + G+   L   E  IL YL   +G  V+  
Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++F A++G        N V +HI +LR+K++        + +   +GY+I+
Sbjct: 182 ELFEAVWGER-YFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIE 231


>gi|229097656|ref|ZP_04228614.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228685795|gb|EEL39715.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       ++G ++    +++ +E L      +V  I   ++       
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNI--LEAIDGKEALSIFEEYEVHLIILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  AVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +      +   +  I V    R   + GE   L   E  IL Y M N+G  +++ Q+ +
Sbjct: 123 SAVKVLTADTLTSSGIHVHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLIN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I G ++ A ++  + SHI  LR KL  K     + +    GY  +
Sbjct: 183 KILG-YEFAGDDRTINSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225


>gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   +     +     G  +   +  +    L    + D+  ++  L   G   L+
Sbjct: 5   LLIEDETELARVAQSYLEKAGFQVILASRGDTGLSLFRQHKPDLVLLDLNLP--GMDGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VPLI ++        L   + G DD + KP   RE++ARV A+ RR   S
Sbjct: 63  VAREIRRQSDVPLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLRRFNRS 122

Query: 123 NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  ++    G + V  D    +   E   L   E ++L  LMA  G+   + Q+  AI G
Sbjct: 123 SGGSQILREGNLEVDLDTHTVKRGDEEIFLTPTEFQLLSTLMAQPGRVFTRLQLLEAIQG 182

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +      E  +++HI  LR K+  +      V++   +GY  
Sbjct: 183 VA-YEGYERTIDAHIKNLRAKIEEDPHHPHYVETVFGVGYRF 223


>gi|270291051|ref|ZP_06197274.1| two-component system, OmpR family, response regulator [Pediococcus
           acidilactici 7_4]
 gi|304385329|ref|ZP_07367674.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|270280447|gb|EFA26282.1| two-component system, OmpR family, response regulator [Pediococcus
           acidilactici 7_4]
 gi|304328536|gb|EFL95757.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 240

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 109/237 (45%), Gaps = 23/237 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   V D     F  +      + +G  +LE   +     + D+  ++  L   G
Sbjct: 3   ILMIEDNKSVSDMMGMFFKKEKWKVTFAYDGVKALEI--FKADPQQWDIVLLDLNLP--G 58

Query: 58  EKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           +  +E+   +R  S+ VPLI ++   S    +   + G D+ + KP     ++AR+ A++
Sbjct: 59  KDGMEVAAELRRTSRTVPLIMLTARDSESDQVLGLEMGADEYITKPFSPITLIARIKALH 118

Query: 117 RR--LKVSNNRAE---------TGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANR 164
           RR  +   N+ AE         T  +++ +  R+  + G++   L  +E  +L+ L    
Sbjct: 119 RRVLMNKHNSNAEQQAGKFDVRTAHLKISTATREVYLDGKLISDLTPKEFDLLKTLAQKP 178

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +  ++ Q+   ++  ++   +E  V++HI KLR+KL   +G   V +   +GY  D
Sbjct: 179 MQVFSREQLLQMVWD-YEYYGDERTVDAHIKKLRQKLE-AVGPQVVQTVWGVGYKFD 233


>gi|226939262|ref|YP_002794333.1| OmpR [Laribacter hongkongensis HLHK9]
 gi|226714186|gb|ACO73324.1| OmpR [Laribacter hongkongensis HLHK9]
          Length = 219

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+ DG  A     G +++            ++A  D   ++  L       L+
Sbjct: 4   LLVEDDPLLGDGLEAGLRQSGFNVDWMKDGAAARAAMAAAPYDAVVLDLGLPKV--SGLD 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           +     R     P++ ++   S++  +   D+G DD + KP    E++AR+ A+ RR   
Sbjct: 62  VLGEWRRQGVDTPVLILTARDSVEDRIRGLDTGADDYLVKPFALGEVVARLRALIRRSHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N   E G + +  + R     G    L  +E ++LE  + N+ + + +  +   +YG 
Sbjct: 122 RANPVFEHGTLVLDPNARTVLQDGRAVELTAKEFQLLELFLENKSRVLPRALLEEKLYGW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E ++ N +E H+  LRKKL    G   + + R +GY +
Sbjct: 182 AQE-LDSNALEVHVHHLRKKL----GSQLIRTVRGVGYQL 216


>gi|33864662|ref|NP_896221.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33632185|emb|CAE06641.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 253

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V+   +      G  +      E    L  S   D+  ++  L         
Sbjct: 14  LVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLVVLDVMLP--KLDGFA 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR++ I RR+   
Sbjct: 72  VCRRLRAESCVPIIFLSAVDAISEKVAGLDLGADDYLPKPFSPKELEARISTILRRVGRG 131

Query: 123 NNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               E             G + V ++ R      E   L   E  +LE L    G+ V +
Sbjct: 132 AAEIESRELPTGQGVMCIGELVVDTNRRQVTRGAERINLTYTEFSLLELLFREPGEVVPR 191

Query: 171 TQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY 
Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYC 242


>gi|116251199|ref|YP_767037.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255847|emb|CAK06928.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 223

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +         + G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   ILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPELDGVTV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  +   A   VP++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 63  LE--KWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGATLKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|5759261|gb|AAD51056.1|AF175293_1 response regulator [Enterococcus faecium]
          Length = 232

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 92/231 (39%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F + +       S   D++ ++  L        
Sbjct: 5   ILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDV--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR     P+I ++        +       DD + KP +  E++ARV A  R+   
Sbjct: 63  QICQKIREKFYFPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLELVARVKAQLRQYMR 121

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +      +   + +        + G+   L   E  IL YL   +G  V+  
Sbjct: 122 YKQPGIKQEAERTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++F A++G        N V +HI +LR+K++        + +   +GY+I+
Sbjct: 182 ELFEAVWGER-FFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIE 231


>gi|313895961|ref|ZP_07829515.1| putative transcriptional regulatory protein ResD [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975386|gb|EFR40847.1| putative transcriptional regulatory protein ResD [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 235

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G S++  +  +  + +  +    +  ++  L   G    
Sbjct: 4   ILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLP--GADGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ +S        +     G DD + KP    E+ ARV A   R   
Sbjct: 62  AICRAVRKELDIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITRYNR 121

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G + +        V G    L  RE  +L +L  +     +K  ++
Sbjct: 122 LKGGEPTEPMSLRFGTLEIQPWTHRVFVAGREVHLASREFELLLFLAEHPQIVFSKETLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++ L +     + V  H+++LR+K+  +      + +    GY  +
Sbjct: 182 DRVWDL-EAMGSTSTVSVHMNRLREKIEEDPSNPQWLQTVWGSGYRFN 228


>gi|291548309|emb|CBL21417.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 230

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +      G DG  +    + +  + ++     D+  ++  +   G    
Sbjct: 14  LLVVDDEVSILELIKNSLGKDGYLITVCQNADDVD-IKKLHFYDLILLDVMMP--GTDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR     P++ ++     +  L     G DD + KP   +E+ ARVAA  RR K 
Sbjct: 71  EFCKQIRNMVDCPILFLTAKTLEEDILFGLGIGADDYITKPFRIQELRARVAAHLRREKR 130

Query: 122 SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++   +    IR     +   V  +  PL + E  I EYL  NRG+   K QI+ A++G
Sbjct: 131 EHHSTLSFEPDIRFDLSAKVLYVSEQPVPLTKSEYSICEYLAKNRGQVFTKEQIYEAVFG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   + + + +HI  +R KL +     P+ +   +GY  +
Sbjct: 191 -FDGIGDNSTISTHIKNIRAKLEH-FKISPISTVWGIGYKWE 230


>gi|225376547|ref|ZP_03753768.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
 gi|225211584|gb|EEG93938.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + + EE L+     +V  +   ++      +
Sbjct: 4   ILVCDDDKEIVEAIEIYLQQEGFHV--LKAYDGEEALEILKNNEVHLLIMDVMMPKLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR +S +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 62  RATLKIRENSSIPIIILSAKTEDSDKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQ 121

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N AE        G + +  D ++  V GEV  L   E  IL  L+ N+GK  +  QI+
Sbjct: 122 LGNAAESGDSIYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            +I+   D    +N V  HI  +R+K+  N      +     +GY ID N
Sbjct: 182 ESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 230


>gi|90577545|ref|ZP_01233356.1| Response regulator [Vibrio angustum S14]
 gi|90440631|gb|EAS65811.1| Response regulator [Vibrio angustum S14]
          Length = 219

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  IA     G   E         +  +S   D   ++  L       +
Sbjct: 3   ILVVEDEVTLGEQIIAGLEQSGWVAELSCDGIDALYRATSEPWDAIVLDLGLP--KLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + IR  +   P++ +S    L   +D  ++G DD + KP    E++ARV A  RR  
Sbjct: 61  TVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       +G++  L   E ++L YLM N  K +++T++   IY 
Sbjct: 121 GNASPVIQAGNLSLDTRTSKVTWEGQIIDLTALEFKVLSYLMHNTDKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  I ++R+K+    G D + + R LGY I+ N
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRRKI----GNDVIKTVRGLGYRINAN 219


>gi|326204220|ref|ZP_08194080.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985731|gb|EGD46567.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL--EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            ++IDD   +      +   +G +     F   E  E + S    D+  ++  L      
Sbjct: 6   ILIIDDEPGIVKMLETILRKEGYTSISSAFTGQEAMEKI-SRNLYDLIVLDVMLPDT--D 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              L + IR H+ VP++ ++        L     G DD + KP +  E+ AR+   +RRL
Sbjct: 63  GFRLCQEIRRHTAVPILFLTARSGDLDKLTGLGIGGDDYITKPFNPLEVAARINVQFRRL 122

Query: 120 KVSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   N  +T      GP+ +        V G+  P P +E  +L +L  +  +     Q+
Sbjct: 123 EQYQNAGQTTEINRFGPVAIDRKAAQLLVDGQEVPCPAKEFELLLFLTDHPNQVFTSGQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +  I+G +D   +E  V  HI +LRKK+ R+      + + R +GY  
Sbjct: 183 YEHIWG-YDSIGDEKTVSIHIMRLRKKIERDAKNPSLIVNIRGIGYKF 229


>gi|212709975|ref|ZP_03318103.1| hypothetical protein PROVALCAL_01026 [Providencia alcalifaciens DSM
           30120]
 gi|212687384|gb|EEB46912.1| hypothetical protein PROVALCAL_01026 [Providencia alcalifaciens DSM
           30120]
          Length = 225

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G +L+ F   +  +     A  D   ++  L       +
Sbjct: 8   ILLIEDDRLIGDGLKVGLTQLGFTLDWFMDGKQGQQALFDAPYDAVVLDLSLPH--IDGM 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +  R      P++ ++   +L+  ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  DILKFWRKQGRDEPVLILTARDALEQRVNGLQQGADDYLCKPFALAEVAARLQALIRRRS 125

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + +         QG+   L  +E  +L   + N  K ++++ I   +Y 
Sbjct: 126 GQLSPTLVHGDVEMDPLAMTVTYQGKPVQLKGKELALLSLFLHNPKKVLSRSAIEEKLYN 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LR+KL +K     + +   +GY +
Sbjct: 186 -WDEEVSSNSVEVHIHHLRRKLGSKF----IQTVHGIGYRL 221


>gi|296332216|ref|ZP_06874679.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|296150708|gb|EFG91594.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
          Length = 230

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G   E  ++ + EE ++   ++    I   ++      +
Sbjct: 4   ILLVEDDHSISEMVDHYLTKEGF--EMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +  +IIR  S +P++ IS              G DD + KP    E+ ARV A  RR   
Sbjct: 62  DFLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N       + +  D       GE   L   E ++L    AN  K   K QI+
Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++   +   ++N++  H+ +LR+K+ +       + +   +GY +
Sbjct: 182 RSVWNE-EYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 227


>gi|254418732|ref|ZP_05032456.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196184909|gb|EDX79885.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 240

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D         G++       E      +  R ++  ++  +       +E
Sbjct: 9   LVVDDDPHIRDLLTFALQKAGLATREAADGEAALADIALYRPNLVVLDINMPR--MDGIE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
             R IRA   +P++ +S        +   + G DD V KP   RE++ARVAAI RR+   
Sbjct: 67  ACRRIRAQGDLPVLFLSSRDDEIDRILGMELGADDYVTKPFSPREVVARVAAILRRIARN 126

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +  +   G + + +DG     +    PL   E  I+  L     +   +  I   +
Sbjct: 127 PPPPTPGQFAFGGLGLDADGWRATWRDVEVPLTVTEFSIVRTLADAPRRVFTRDAIIDRV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G    A+ +  ++SH+  LR K     G D ++++  +GY +
Sbjct: 187 HGPG-FAMTDRTIDSHVRNLRAKFAAVGGADVIETRPGIGYQL 228


>gi|119469680|ref|ZP_01612549.1| DNA-binding response regulator [Alteromonadales bacterium TW-7]
 gi|119446927|gb|EAW28198.1| DNA-binding response regulator [Alteromonadales bacterium TW-7]
          Length = 241

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 87/234 (37%), Gaps = 17/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +            + ++   S E      +     +  ++  L       L
Sbjct: 6   LLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINLPQ--MDGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119
            L R I+ H     +I ++   S    +   + G DD + KP   RE+ ARV    R R 
Sbjct: 64  SLCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRA 123

Query: 120 K------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           +             S    + G + +  D     +  +   L   E  +L Y   +    
Sbjct: 124 QLLASQNTDEPSVASEQTLKVGSLNIEFDSHQVYLAEQAINLTATEFDLLVYFARHPNHV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ Q+   ++G +  +  E+ V SHI++LR KL        +++   +GY ++
Sbjct: 184 FSRQQLLDKVWG-YQHSGYEHTVNSHINRLRAKLELHQSTPIIETVWGVGYKLN 236


>gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 251

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       D+   +   +S +  E L+   + +  A+   L+  G   LE
Sbjct: 16  LIVEDDVDIANVLSLHLRDERYEV--VHSADGNEGLRLLEQGNWDALILDLMLPGVDGLE 73

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR   
Sbjct: 74  ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRADA 133

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++         + +    R+  V G+   L  RE  +L +  +  GK  ++  + 
Sbjct: 134 MAKDARMEAGSLNLAGLFIDPLTREASVNGKRIELTPREFDLLYFFASRPGKVFSRMDLL 193

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +A++G +     E+ V +HI++LR K+ +       + +    GY  
Sbjct: 194 NAVWG-YQHEGYEHTVNTHINRLRAKIEDDPAQPARILTVWGRGYKF 239


>gi|297183269|gb|ADI19407.1| response regulators consisting of a chey-like receiver domain and a
           winged-helix DNA-binding domain-protein [uncultured
           Pseudomonadales bacterium HF0500_12O04]
          Length = 222

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A     G +L+         +   S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELMASLTRSGYALDWLADGRDALYQGQSEPYDLIILDLGLP--GISGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  RA     P++ ++   S    ++   +G DD + KP H  E+L RV A+ RR  
Sbjct: 61  EVLKQWRAQGLATPVLILTARSSWSERIEGLKAGADDYLTKPFHPEELLLRVQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   +   + +    +     G    L   E R+L Y M +  + ++K+ +   +Y
Sbjct: 121 GQANQPLLKCAGLHLDEARQCVINDGAQVQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   + NV+E H++ LR+KL    G   ++++R  GY  
Sbjct: 181 DG-ETERDSNVLEVHVNHLRRKL----GRSVIETRRGQGYIF 217


>gi|159029954|emb|CAO90333.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 97/227 (42%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G  ++  ++      L      D+  ++  L  +    L
Sbjct: 3   ILIVDDEKELTEPLEQILAQEGYDVDIADNGRTGLELAQENNYDLLILDWMLPQQ--SGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + +R      P++ ++   ++   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  QICQYLRDQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSP 120

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++++ +   + + S+ +     G    L  +E ++L   M   G+ +   QI+  
Sbjct: 121 NFEASNSSKLKCADLELDSENQVAYRHGRTISLSAKEIQLLTLFMTYPGQLLTHEQIYQH 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++    E    NVV + +  LR+K+        +++    GY    N
Sbjct: 181 LWSEG-EQPNSNVVPALMRLLRRKIEADGETPLINTVYGKGYRFGEN 226


>gi|30260805|ref|NP_843182.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525930|ref|YP_017279.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183643|ref|YP_026895.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165872685|ref|ZP_02217314.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635188|ref|ZP_02393504.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640906|ref|ZP_02399164.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689014|ref|ZP_02880214.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708465|ref|ZP_02898907.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652822|ref|ZP_02935195.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568540|ref|ZP_03021446.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227816479|ref|YP_002816488.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601364|ref|YP_002865249.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684272|ref|ZP_05148132.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722076|ref|ZP_05183865.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738737|ref|ZP_05196440.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742051|ref|ZP_05199738.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754962|ref|ZP_05206996.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762307|ref|ZP_05214151.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254254|gb|AAP24668.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501078|gb|AAT29754.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177570|gb|AAT52946.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164711546|gb|EDR17094.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511126|gb|EDR86514.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529447|gb|EDR92198.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126586|gb|EDS95471.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170666999|gb|EDT17762.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081856|gb|EDT66925.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560334|gb|EDV14313.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006857|gb|ACP16600.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265772|gb|ACQ47409.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 225

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWNEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|27382730|ref|NP_774259.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355902|dbj|BAC52884.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 234

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G+ +      +      ++ R D+  ++  +       L
Sbjct: 5   ILIVDDEGHIREVIRVALKKAGMDVIEARDGKEALARFAADRPDLIVLDVGMPEF--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP++ +S        +   + G DD V KP   RE++ARV  I RRL  
Sbjct: 63  DVCREIRKGSDVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILRRLSP 122

Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N  A+ GP       + +  +       G    L   E  IL   +        + Q+ 
Sbjct: 123 RNGEAKAGPSALAQGGLLIDPEQHVASFAGTPLKLTAIEFGILRAFLTRPTSVFNREQLM 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A Y L +  V +  ++SHI  +R KL      + +++   +G+ +
Sbjct: 183 RAAYQL-NIQVSDRTIDSHIRNIRAKLAALSCDNVIETIHGVGFKL 227


>gi|89096575|ref|ZP_01169467.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088590|gb|EAR67699.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 226

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +K+         G       + +  E +Q   R  V  +   ++      L
Sbjct: 4   ILLVDDEERMKNLLALFLEPHGYKC--LRAKDGYEAIQLVKRTHVDMLLLDIMMPELDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR  S VP+I ++        +  FD G DD V KP   R +LARV A++RR ++
Sbjct: 62  ETCRKIREFSNVPIIMLTARTDNLDMIKGFDCGADDYVTKPFDERVLLARVNALFRRQQI 121

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   E   G  ++  D    + +G+   L  +E  +LE LM +  +   + Q+ +  + 
Sbjct: 122 QHGAKEVIRGDFKLDMDSYTLKYKGKAVSLTLKEFLLLETLMKHPERVYTRDQLLAVAWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD----SKRFLGY 218
           + + + E   V+SH+  LR+KL  K    P++    +   +GY
Sbjct: 182 I-NASTEIRTVDSHVRNLREKL--KGASFPIEEHLATVWGIGY 221


>gi|109896972|ref|YP_660227.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109699253|gb|ABG39173.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 222

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D        +G ++ G  +        ++    +  ++  L       L
Sbjct: 3   ILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPD--MDGL 60

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R   R    VP + ++   S+   +   DSG DD + KP   +E+LAR+  + RRL 
Sbjct: 61  EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +               L RRE  +L+ LM N G+  +K+Q+ + +Y 
Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE +  N +E HI  LRKKL      D + + R +GYS+
Sbjct: 181 WGDE-LSSNAIEVHIHNLRKKL----PKDFIKTIRGVGYSV 216


>gi|325686293|gb|EGD28332.1| phosphate regulon response regulator [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 225

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +++  +         + GF+  +       ++R D+  ++  L    E   
Sbjct: 4   IWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALDNSRPDLVILDLMLPD--EDGS 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   +R+ S    +P+I  S   +    +   DSG DD + KP    E+++RV A+ RR
Sbjct: 62  EILHRLRSTSATEDLPVIVASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRR 121

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   ++ E   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I
Sbjct: 122 TNRKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +       E   V+ H+  LR+KL        +++ R +GY 
Sbjct: 182 WETG-FYGETRTVDVHVRTLRQKLGEAG--KHIETVRGVGYR 220


>gi|239831456|ref|ZP_04679785.1| Transcriptional activator protein copR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823723|gb|EEQ95291.1| Transcriptional activator protein copR [Ochrobactrum intermedium
           LMG 3301]
          Length = 235

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S +     E    L  +   DV  ++  L  +    L
Sbjct: 3   ILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYALAENGSYDVLVVDRMLPKR--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +RA   + P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SVVAGLRAKGMETPVLVLSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     G + +         Q     L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEKGFDVPLLHTVRGAGYML 221


>gi|228985005|ref|ZP_04145173.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774693|gb|EEM23091.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 247

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +  F++   EE L+      +      ++      +
Sbjct: 21  ILIVDDDQDIVRFVKANLMQEGFKV--FSAHNGEESLEIINNNSIQLAILDIMMPQMDGI 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 79  ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 139 FNQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 199 YESVWKEKAYESN-NTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 246


>gi|332142499|ref|YP_004428237.1| Response regulator consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552521|gb|AEA99239.1| Response regulator consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 226

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V          +G   E     +       ++  ++ A+   ++        
Sbjct: 4   LLVEDDPKVASHIANGLLGEGH--ECITVGDGASGFNEASSNELDAVILDVMLPELDGFS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R      P++ +S    ++  +    +G +D + KP    E+LARV  +  R K 
Sbjct: 62  VLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNKD 121

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +    R      +   L  +E ++LE L+ ++GK V ++ +   ++ 
Sbjct: 122 GEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVWN 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR+K+        +++ R  GY I
Sbjct: 182 -YHFDPQTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRI 221


>gi|298501422|ref|YP_003723419.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298235162|gb|ADI66296.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 244

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 20/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQS-SAREDVSAIEAFLIGKGEK 59
            +L++D A +      +   +   ++ F +  +  ++L++      ++  +  L   G  
Sbjct: 3   LILVEDEADLGAAIKQVLSHEAYIVDWFLDGNQAWQYLETGWTEYTLAIFDWMLP--GVS 60

Query: 60  VLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +EL + +R+H  + P++ ++    ++  +   DSG DD + KP    E+LAR+ A+ RR
Sbjct: 61  GIELCKWLRSHQLILPVLMLTAKDRIEEKIIGLDSGADDYLVKPFDMAELLARLRALQRR 120

Query: 119 L---------KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANR 164
                     +V     + G + +         Q      +VF L  +E ++LEY M + 
Sbjct: 121 SSYVGTTLTPQVQPRHLQVGCLTLNYSTHQLHRQYSHGKNQVFSLTVKEFQLLEYFMRHP 180

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + V++ QI S ++ +  E V  NVV + I  LR+KL  +     +++   +GY ++
Sbjct: 181 HQIVSRDQIISQLWEIGAEPV-SNVVAAQIRLLRRKLGEEEKESLIETVYGVGYRLN 236


>gi|146291368|ref|YP_001181792.1| DNA-binding transcriptional activator CusR [Shewanella putrefaciens
           CN-32]
 gi|145563058|gb|ABP73993.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella putrefaciens CN-32]
          Length = 226

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++     + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEV 223


>gi|258515817|ref|YP_003192039.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779522|gb|ACV63416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 237

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +   +    S +       + R  +  ++  L   G   L
Sbjct: 7   ILVVEDEDSIRQFITINLERNSFQVMEAVSGKEALTRSKTFRPHLMVLDIMLP--GMDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R  S  + +I ++        +   + G DD V KP +  E++AR+ A+ RR++
Sbjct: 65  EVCRRLRVESPGIAVIMLTARGQDIDKVMGLELGADDYVVKPFNPLELVARIRAVLRRMQ 124

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++     G  R+    +      +   L  RE  +++  + N  + +++  + + 
Sbjct: 125 TDRPDNSQIICQGLFRLDDRAQLICKNDQELDLTPREYCLMKIFLENSNRALSRDWLLNL 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
            +G  D   +   V+ HI +LR+K+ +       +++   +GY 
Sbjct: 185 AWGE-DFVGDPKTVDVHIRRLREKIEDNPSKPVYIETVWGVGYR 227


>gi|255283546|ref|ZP_05348101.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bryantella formatexigens DSM 14469]
 gi|255265808|gb|EET59013.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bryantella formatexigens DSM 14469]
          Length = 223

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++        + G S+             S    D+  ++  L        
Sbjct: 4   ILIVEDDISIQALLHDFIQEAGHSVVLAADGVEALAKYSEQTFDLVLLDIMLP--KIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +  +IR  S VP+I ++   + +  +   D   DD + KP     +L ++AA+ RR   
Sbjct: 62  GVCEVIRQKSNVPIIMLTALDNEENQIKGLDLQADDYITKPFSMPVLLRKIAAVLRRSSR 121

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++  +T     + +  DG       E   L  RE  IL  L+ ++G+ + +  +   ++
Sbjct: 122 QDDVPQTINYKDLTLDLDGYKVYNGQESVDLTPREFEILRELLTHKGRILTRQNLLQTLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++   EE ++++HI  LRKKL      D +++ R +GY ID
Sbjct: 182 -KYEFFGEERIIDTHIKNLRKKLGTA---DYIETIRGVGYRID 220


>gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 234

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 107/227 (47%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL----QSSAREDVSAIEAFLIGKG 57
            ++I+D   + +        +G ++  F++ +    L    +     DV  ++  +    
Sbjct: 17  ILIIEDEESISNLLETELSFEGYNV--FSAADGMSGLKIFEEKQEYLDVVLLDWMIP--K 72

Query: 58  EKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              LE+ R ++   ++VP+I ++    +   +   D+G DD + KP +  E++AR+  I+
Sbjct: 73  LDGLEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIF 132

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R+          G + +       E Q +   L +RE  +L +L  ++G+ +++  I   
Sbjct: 133 RK-NTQPAIYSYGTVSLNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEIISRDDILEE 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G+ +   + N V++++  LRKKL      + +++ R LGY ++ +
Sbjct: 192 VWGM-NFGGQLNTVDTYVRYLRKKLD----KNMIETIRGLGYRLNKD 233


>gi|23501499|ref|NP_697626.1| DNA-binding response regulator [Brucella suis 1330]
 gi|62289574|ref|YP_221367.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|148560055|ref|YP_001258605.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|161618587|ref|YP_001592474.1| transcriptional activator protein copR [Brucella canis ATCC 23365]
 gi|225627119|ref|ZP_03785157.1| Transcriptional activator protein copR [Brucella ceti str. Cudo]
 gi|254688895|ref|ZP_05152149.1| transcriptional activator protein copR [Brucella abortus bv. 6 str.
           870]
 gi|254693376|ref|ZP_05155204.1| transcriptional activator protein copR [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697027|ref|ZP_05158855.1| transcriptional activator protein copR [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701406|ref|ZP_05163234.1| transcriptional activator protein copR [Brucella suis bv. 5 str.
           513]
 gi|254703951|ref|ZP_05165779.1| transcriptional activator protein copR [Brucella suis bv. 3 str.
           686]
 gi|254707671|ref|ZP_05169499.1| transcriptional activator protein copR [Brucella pinnipedialis
           M163/99/10]
 gi|254709746|ref|ZP_05171557.1| transcriptional activator protein copR [Brucella pinnipedialis
           B2/94]
 gi|254713749|ref|ZP_05175560.1| transcriptional activator protein copR [Brucella ceti M644/93/1]
 gi|254717193|ref|ZP_05179004.1| transcriptional activator protein copR [Brucella ceti M13/05/1]
 gi|254718761|ref|ZP_05180572.1| transcriptional activator protein copR [Brucella sp. 83/13]
 gi|254729926|ref|ZP_05188504.1| transcriptional activator protein copR [Brucella abortus bv. 4 str.
           292]
 gi|256031236|ref|ZP_05444850.1| transcriptional activator protein copR [Brucella pinnipedialis
           M292/94/1]
 gi|256060744|ref|ZP_05450908.1| transcriptional activator protein copR [Brucella neotomae 5K33]
 gi|256159339|ref|ZP_05457129.1| transcriptional activator protein copR [Brucella ceti M490/95/1]
 gi|256254644|ref|ZP_05460180.1| transcriptional activator protein copR [Brucella ceti B1/94]
 gi|256257143|ref|ZP_05462679.1| transcriptional activator protein copR [Brucella abortus bv. 9 str.
           C68]
 gi|256369051|ref|YP_003106559.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260168372|ref|ZP_05755183.1| DNA-binding response regulator [Brucella sp. F5/99]
 gi|260566800|ref|ZP_05837270.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260754380|ref|ZP_05866728.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260757599|ref|ZP_05869947.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761425|ref|ZP_05873768.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883405|ref|ZP_05895019.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261213626|ref|ZP_05927907.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|261219009|ref|ZP_05933290.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261221819|ref|ZP_05936100.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261315167|ref|ZP_05954364.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261317277|ref|ZP_05956474.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261321491|ref|ZP_05960688.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324734|ref|ZP_05963931.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751945|ref|ZP_05995654.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261754603|ref|ZP_05998312.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261757832|ref|ZP_06001541.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265983739|ref|ZP_06096474.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|265988315|ref|ZP_06100872.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265997783|ref|ZP_06110340.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|294851980|ref|ZP_06792653.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297247989|ref|ZP_06931707.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306838737|ref|ZP_07471572.1| DNA-binding response regulator [Brucella sp. NF 2653]
 gi|306842118|ref|ZP_07474787.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|306845218|ref|ZP_07477794.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|23347405|gb|AAN29541.1| DNA-binding response regulator [Brucella suis 1330]
 gi|62195706|gb|AAX74006.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|148371312|gb|ABQ61291.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|161335398|gb|ABX61703.1| Transcriptional activator protein copR [Brucella canis ATCC 23365]
 gi|225617954|gb|EEH14998.1| Transcriptional activator protein copR [Brucella ceti str. Cudo]
 gi|255999211|gb|ACU47610.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260156318|gb|EEW91398.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260667917|gb|EEX54857.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671857|gb|EEX58678.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674488|gb|EEX61309.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872933|gb|EEX80002.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260915233|gb|EEX82094.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260920403|gb|EEX87056.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|260924098|gb|EEX90666.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261294181|gb|EEX97677.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296500|gb|EEX99996.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300714|gb|EEY04211.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261304193|gb|EEY07690.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261737816|gb|EEY25812.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261741698|gb|EEY29624.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261744356|gb|EEY32282.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262552251|gb|EEZ08241.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|264660512|gb|EEZ30773.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|264662331|gb|EEZ32592.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|294820569|gb|EFG37568.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297175158|gb|EFH34505.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306274377|gb|EFM56184.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|306287705|gb|EFM59136.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|306406224|gb|EFM62468.1| DNA-binding response regulator [Brucella sp. NF 2653]
          Length = 235

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S +     E    L  +   DV  ++  L  +    L
Sbjct: 3   ILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKR--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +RA   + P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     G + +         Q     L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEKGFDEPLLHTVRGAGYML 221


>gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 235

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD     +         G ++           +    + D+  ++  +       +
Sbjct: 6   ILIADDEPNQLELLSFNLRQAGFTVFEAADGRQAVNMVEDLQPDLIILDWMMPH--MSGI 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R+ R+      +P+I +S            D+G DD + KP   RE+++RV A+ RR
Sbjct: 64  EVCRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGADDYITKPFSPRELVSRVKALLRR 123

Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   +++  E   +++F    +    G+  PL  +E ++L  L    G+  ++  +   
Sbjct: 124 ARPALASDMMEFEDLQIFPSRMEVRRAGKTVPLGPKEYQLLLTLFERPGQVFSRPLLLDR 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-----RNKLGFDPVDSKRFLGYSI 220
           ++G     VEE  V+ H S+LRK +      N    + + + R  GY++
Sbjct: 184 VWG-HGVFVEERTVDVHFSRLRKAINGAASDNDKRPNLIRTVRGGGYAL 231


>gi|229018483|ref|ZP_04175345.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229024739|ref|ZP_04181178.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228736582|gb|EEL87138.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228742835|gb|EEL92973.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 6   ILLADDDKHIRELLHYHVQKEGFKVFEAEDGKVAQGILEKENIHLAIVDIMMPF--IDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +  +     +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIIKLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115]
 gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 222

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +           G  +                  D+  ++  L        
Sbjct: 5   ILLIEDNPDITRVVQYELEQAGYRVLTAADGITGLTSAREHAPDLVVLDLGLPDF--DGA 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   ++   ++  ++G DD + KP H  E++ARV     R + 
Sbjct: 63  EVARRLRKTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQL-RHQQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +    R     G    L  +E  +L +L    G+  ++ +I   ++   
Sbjct: 122 HGEVISIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219


>gi|196035783|ref|ZP_03103186.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195991750|gb|EDX55715.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 225

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPT--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|302524998|ref|ZP_07277340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302433893|gb|EFL05709.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 264

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G                +    D+  ++  L        
Sbjct: 40  LLVVDDEPHIADLVATVARYEGWQAVTAGCGADALARAAEFAPDIVVLDLMLPDF--DGF 97

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R     VP++ ++   +    +     G DD + KP    E++AR+ A+ RR  
Sbjct: 98  TVLDKLREKHDAVPVVFLTAKDATADRIAGLTRGGDDYLVKPFSVEELMARLRAVLRRTS 157

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      + G + +  +  +    G++  L   E  +L YLM +    + K QI   
Sbjct: 158 EKPDARAVSLQVGDLTLDEETHEVRRGGQLAELTPTEYELLRYLMRHSPAVLTKAQILDH 217

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D     NVVE  IS+LR+KL  +     + + R +GYS+
Sbjct: 218 VW-EYDFGGRSNVVELAISRLRRKLDAEAEP-LIHTVRGVGYSV 259


>gi|296501330|ref|YP_003663030.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296322382|gb|ADH05310.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMP--GMDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|229821566|ref|YP_002883092.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229567479|gb|ACQ81330.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 233

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G                 S   D+  ++  L   G   LE
Sbjct: 12  LIVDDDDALVGVLAEYLRAAGFVTSVAGDGLGAVERTRSWEPDLIVLDRMLP--GIDGLE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +RA    P+I ++   +    +   + G DD V KP   RE++ R+ ++ RR    
Sbjct: 70  VTRRVRAICDAPIIMLTALGTGDDRIAGLEVGADDYVTKPFSPRELVLRIQSVLRRALGP 129

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + + A  GP+ +    R     G+V PL  RE  +L +LM +  +  ++ ++   ++G
Sbjct: 130 LSAPSDATAGPLDLDGARRRVTRDGDVVPLTTREFDLLAFLMRHPDRAFSREELLEHVWG 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
                 + + V  H+ +LR K+ +      +  +   +GY +
Sbjct: 190 WT--FGDLSTVTVHVRRLRAKIEDDPTRPRIVQTVWGVGYLL 229


>gi|226314787|ref|YP_002774683.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097737|dbj|BAH46179.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 226

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 19/228 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-----LQSSAREDVSAIEAFLIGKG 57
           +L++D  L+++     F  D    E +   E +       L +    D+  ++  +    
Sbjct: 6   LLVEDDELIRE-----FVSDYFKKEAWEVYEAQHGKMAMELFALHSVDLVVLDIMMPE-- 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
                + R IR  S +P+I I+        L  F+ G D+ V KP   + ++AR  A+ +
Sbjct: 59  MDGWSVCRKIRQQSDIPIIIITARVDDDDQLMGFELGADEYVTKPFSPKVLVARAKALMK 118

Query: 118 RLKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R + S    ++ A+ G + V        +      L  +E  +L + + + G  +++  I
Sbjct: 119 RAEGSIGRGDDIAQFGALTVNKRAHTVTIASVPVSLTPKEYELLLFFIKHEGTVLSRDSI 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++G+ D   +   V++H+ KLR KL        + +    GY  +
Sbjct: 179 LNGVWGM-DYFGDHRTVDTHVKKLRAKLDT--EQHLIQTMIRFGYKFE 223


>gi|196045036|ref|ZP_03112269.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225863840|ref|YP_002749218.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196024038|gb|EDX62712.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225786425|gb|ACO26642.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 232

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++  +       +
Sbjct: 6   ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPH--MDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 64  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A   +     +I
Sbjct: 124 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 184 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231


>gi|56540667|gb|AAV92787.1| PmrA [Salmonella enterica]
 gi|56540669|gb|AAV92788.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +        ++G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELAVGNLTLNMGRHQAWIEGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 223

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL N    + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLDC 223


>gi|26250928|ref|NP_756968.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           CFT073]
 gi|91213660|ref|YP_543646.1| DNA-binding transcriptional regulator BasR [Escherichia coli UTI89]
 gi|117626400|ref|YP_859723.1| DNA-binding transcriptional regulator BasR [Escherichia coli APEC
           O1]
 gi|170769529|ref|ZP_02903982.1| DNA-binding response regulator BasR [Escherichia albertii TW07627]
 gi|215489463|ref|YP_002331894.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218561202|ref|YP_002394115.1| DNA-binding transcriptional regulator BasR [Escherichia coli S88]
 gi|218692409|ref|YP_002400621.1| DNA-binding transcriptional regulator BasR [Escherichia coli ED1a]
 gi|227886849|ref|ZP_04004654.1| DNA-binding transcriptional regulator BasR [Escherichia coli 83972]
 gi|237703701|ref|ZP_04534182.1| transcriptional regulatory protein basR/PmrA [Escherichia sp.
           3_2_53FAA]
 gi|300988429|ref|ZP_07178667.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301047669|ref|ZP_07194731.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|306815753|ref|ZP_07449902.1| DNA-binding transcriptional regulator BasR [Escherichia coli NC101]
 gi|312965731|ref|ZP_07779960.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           2362-75]
 gi|331660690|ref|ZP_08361622.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA206]
 gi|26111360|gb|AAN83542.1|AE016771_53 Transcriptional Regulatory protein basR/pmrA [Escherichia coli
           CFT073]
 gi|56540613|gb|AAV92760.1| PmrA [Escherichia coli]
 gi|56540615|gb|AAV92761.1| PmrA [Escherichia coli]
 gi|56540617|gb|AAV92762.1| PmrA [Escherichia coli]
 gi|56540619|gb|AAV92763.1| PmrA [Escherichia coli]
 gi|56540621|gb|AAV92764.1| PmrA [Escherichia coli]
 gi|56540623|gb|AAV92765.1| PmrA [Escherichia coli]
 gi|56540625|gb|AAV92766.1| PmrA [Escherichia coli]
 gi|56540627|gb|AAV92767.1| PmrA [Escherichia coli]
 gi|56540629|gb|AAV92768.1| PmrA [Escherichia coli]
 gi|56540631|gb|AAV92769.1| PmrA [Escherichia coli]
 gi|56540633|gb|AAV92770.1| PmrA [Escherichia coli]
 gi|56540635|gb|AAV92771.1| PmrA [Escherichia coli]
 gi|56540637|gb|AAV92772.1| PmrA [Escherichia coli]
 gi|91075234|gb|ABE10115.1| transcriptional regulatory protein basR/PmrA [Escherichia coli
           UTI89]
 gi|115515524|gb|ABJ03599.1| BasR, DNA-binding response regulator in two-component regulatory
           system with BasS [Escherichia coli APEC O1]
 gi|170121586|gb|EDS90517.1| DNA-binding response regulator BasR [Escherichia albertii TW07627]
 gi|215267535|emb|CAS11989.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli O127:H6 str. E2348/69]
 gi|218367971|emb|CAR05771.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli S88]
 gi|218429973|emb|CAR10806.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli ED1a]
 gi|222035841|emb|CAP78586.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           LF82]
 gi|226901613|gb|EEH87872.1| transcriptional regulatory protein basR/PmrA [Escherichia sp.
           3_2_53FAA]
 gi|227836191|gb|EEJ46657.1| DNA-binding transcriptional regulator BasR [Escherichia coli 83972]
 gi|294491023|gb|ADE89779.1| DNA-binding response regulator BasR [Escherichia coli IHE3034]
 gi|300300415|gb|EFJ56800.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300407427|gb|EFJ90965.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|305851415|gb|EFM51870.1| DNA-binding transcriptional regulator BasR [Escherichia coli NC101]
 gi|307556283|gb|ADN49058.1| transcriptional regulatory protein [Escherichia coli ABU 83972]
 gi|307629184|gb|ADN73488.1| DNA-binding transcriptional regulator BasR [Escherichia coli UM146]
 gi|312289705|gb|EFR17596.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           2362-75]
 gi|312948707|gb|ADR29534.1| DNA-binding transcriptional regulator BasR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315287932|gb|EFU47334.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315293972|gb|EFU53324.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315296115|gb|EFU55424.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320193493|gb|EFW68130.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           WV_060327]
 gi|323190005|gb|EFZ75283.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           RN587/1]
 gi|323950321|gb|EGB46202.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323954400|gb|EGB50184.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|324008691|gb|EGB77910.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|331051732|gb|EGI23771.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA206]
          Length = 222

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELNVGNLTLNMGRRQVWMSGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYMLVAN 219


>gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL N    + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLDC 223


>gi|268592132|ref|ZP_06126353.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
 gi|291312530|gb|EFE52983.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
          Length = 227

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++       + G  ++   +      + ++   D+  ++  L        
Sbjct: 3   LLIVEDEHKTREYLSKGLSESGFIVDAIENGITGLHMATTEDYDLIILDVMLPD--INGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ + +R +    P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EIAKSLRNSGKNTPILMLTALGNVEHRVKGLELGADDYLVKPFDFSELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   +     + V    R    + +   L  +E  +LE+ + ++G+ ++++ I S ++
Sbjct: 121 SSIQKTQFTIANLHVDLIKRRVTRENDKIILTSKEFSLLEFFILHQGEVLSRSLIASKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  + +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAVKRLRAKIDQGYEPKLIHTIRGMGYLLE 222


>gi|218676350|ref|YP_002395169.1| putative two-component response regulator [Vibrio splendidus LGP32]
 gi|218324618|emb|CAV26167.1| putative two-component response regulator [Vibrio splendidus LGP32]
          Length = 243

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 93/231 (40%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +         G ++E  N++E  + L    + D+  ++  L       L+
Sbjct: 13  LLVEDDDDLAELVQMHLKFQGHNVERANTIEKAQDLYLDGQFDLVVLDRGLPD--GDGLD 70

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R+IR      P++ ++   +    +   ++GVDD + KP    E  ARV  + RRL  
Sbjct: 71  FCRMIRQKEDWTPVLMLTARDAELDKVSGLEAGVDDYITKPFSVLEFQARVRNVLRRLSH 130

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             +  +           G + +  +     +  +  PL   E  +L +L    G+  +K 
Sbjct: 131 VESVTQEAMTTESIMNFGGLIIQPERHQVSLNNQDVPLTATEFTLLHFLATRPGRVYSKD 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++   ++         + V S +++LR KL       D + +   +GY  +
Sbjct: 191 ELLDHVWNTHHS-GYHHTVCSTVNRLRTKLAMPNSDDDFIKTVWGVGYKFE 240


>gi|89895637|ref|YP_519124.1| hypothetical protein DSY2891 [Desulfitobacterium hafniense Y51]
 gi|89335085|dbj|BAE84680.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 263

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 9/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +++        +G  +           +    + ++  ++  L   G   
Sbjct: 39  VILVVDDEEPIQELLRFNLEKEGYQVLIAADGSEALGILEEKQPELVVLDIMLP--GISG 96

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+   IR      ++P+I ++        +   + G DD + KP   RE++AR+ A  R
Sbjct: 97  LEVLNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRELIARIRARLR 156

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RLK S  NN      + +  D     V+GE   L  +E  +L  L    GK   + ++  
Sbjct: 157 RLKPSEENNDILRQDLHIDLDRFRVSVRGEYIELTPKEFELLRVLATYPGKVYTRDELLE 216

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G ++ A +   V+ H+  LR+K+  +    + +++ R +GY +
Sbjct: 217 RIWG-YEYAGDTRTVDVHVRHLRQKIEKDPSNPEYIETLRGIGYRL 261


>gi|22125688|ref|NP_669111.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis KIM 10]
 gi|108807885|ref|YP_651801.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis
           Antiqua]
 gi|108812159|ref|YP_647926.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis
           Nepal516]
 gi|149366402|ref|ZP_01888436.1| response regulator protein [Yersinia pestis CA88-4125]
 gi|165925538|ref|ZP_02221370.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938457|ref|ZP_02227014.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008412|ref|ZP_02229310.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210640|ref|ZP_02236675.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401723|ref|ZP_02307214.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421718|ref|ZP_02313471.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426336|ref|ZP_02318089.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469318|ref|ZP_02334022.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis FV-1]
 gi|218928770|ref|YP_002346645.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis CO92]
 gi|229841621|ref|ZP_04461779.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843738|ref|ZP_04463881.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229902480|ref|ZP_04517599.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Nepal516]
 gi|270490340|ref|ZP_06207414.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504168|ref|YP_003568230.1| response regulator protein [Yersinia pestis Z176003]
 gi|21958603|gb|AAM85362.1|AE013782_3 transcriptional regulatory protein [Yersinia pestis KIM 10]
 gi|1621018|emb|CAA70004.1| PhoP protein [Yersinia pestis]
 gi|108775807|gb|ABG18326.1| response regulator protein [Yersinia pestis Nepal516]
 gi|108779798|gb|ABG13856.1| response regulator protein [Yersinia pestis Antiqua]
 gi|115347381|emb|CAL20279.1| response regulator protein [Yersinia pestis CO92]
 gi|149290776|gb|EDM40851.1| response regulator protein [Yersinia pestis CA88-4125]
 gi|165913572|gb|EDR32192.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922647|gb|EDR39798.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992794|gb|EDR45095.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207820|gb|EDR52300.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960203|gb|EDR56224.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048828|gb|EDR60236.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054691|gb|EDR64495.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680526|gb|EEO76623.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Nepal516]
 gi|229689346|gb|EEO81409.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229694084|gb|EEO84132.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|262362285|gb|ACY59006.1| response regulator protein [Yersinia pestis D106004]
 gi|262366219|gb|ACY62776.1| response regulator protein [Yersinia pestis D182038]
 gi|270338844|gb|EFA49621.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294354627|gb|ADE64968.1| response regulator protein [Yersinia pestis Z176003]
 gi|320014777|gb|ADV98348.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 223

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGLP--GEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H   +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             E  E + ++  + +LRKKL  +   + + + R  GY  D N
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRSQGYRFDVN 223


>gi|296271218|ref|YP_003653850.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296094005|gb|ADG89957.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 229

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++         G  +    +    EW  + +R D+  ++  L       L 
Sbjct: 8   LVVEDDPGIRELLREGLRHAGFEVIATATGREAEWQANRSRPDLVLLDVMLPD--IDGLL 65

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L  R++ A   VP++ ++   S    +     G DD V KP    E++AR+ A+ RR + 
Sbjct: 66  LAERLVHAIGPVPVVFVTARDSTADKVAGLARG-DDYVTKPFRMEELIARIQAVLRRSRG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R     + +  + R+    G    L   E R+L Y M N+G+ ++K QI   ++
Sbjct: 125 WDAPRPRLTVADLELDEETREVWRAGRPIRLSPTEFRLLRYFMINQGRVLSKAQILDHVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VES++S LR+K+ +      + + R +GY +
Sbjct: 185 N-YDFRGDANIVESYVSYLRRKI-DTTEPKLIHTLRGVGYVL 224


>gi|260102559|ref|ZP_05752796.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|260083634|gb|EEW67754.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
          Length = 234

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 110/234 (47%), Gaps = 23/234 (9%)

Query: 5   IDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           ++D   V +     F  +G    ++++G  +++   + +++ + D+  ++  L  K    
Sbjct: 2   VEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDM--FKENADKYDLITLDLNLPKK--DG 57

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + +RA S  VP+I ++   S    +     G D+ V KP     ++AR+ A++RR+
Sbjct: 58  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 117

Query: 120 KVSNN-----------RAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKR 167
            +  +             +T  +++  D R+     + V  L  +E  +L  +     + 
Sbjct: 118 MMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLLYTMAQKPKQV 177

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ Q+   ++G ++   EE  V++HI KLR+KL  K+G   + +   +GY  D
Sbjct: 178 FSRDQLLDLVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 229


>gi|229162132|ref|ZP_04290103.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228621339|gb|EEK78194.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 223

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFV--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F +G DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFIAGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 122 LSADIITLHGTTIDRKGIEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|227513674|ref|ZP_03943723.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083085|gb|EEI18397.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 242

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 95/231 (41%), Gaps = 18/231 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +              ++   +      +  +   D+  ++  L        E
Sbjct: 5   LVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPE--MSGEE 62

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR   +  P+I ++   +    +   + G DD V KP   RE++AR+ A+ RR + 
Sbjct: 63  VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122

Query: 122 SN-------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           S              +   TGP  +        V  +   L  +E  +++YL+ +  + +
Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           ++ Q+   ++G FD + +  +V+  I+ LR+K+  +      + + R  GY
Sbjct: 183 SRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGY 232


>gi|187928922|ref|YP_001899409.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|309783197|ref|ZP_07677913.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
 gi|187725812|gb|ACD26977.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
 gi|308918075|gb|EFP63756.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
          Length = 228

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +   +       + G  ++   +      L  +   D+  ++  L     +  
Sbjct: 3   LLVVEDESKTGEYLQQGLSEAGFVVDLARNGLDGRHLAMTGDYDLLILDVMLPD--LEGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R+    VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  QILHALRSTELAVPVLFLTARDSVADRVKGLELGADDYMVKPFAFAELLARVRTLLRRGS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   R +   + +    R     G+   L  +E  +LE L    G+ + ++ I S ++
Sbjct: 121 APSLAERIQVADLVLDLTRRRASRGGQRITLTSKEFSLLELLARRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDNFEPKLIHTVRGMGYVLE 222


>gi|169794902|ref|YP_001712695.1| transcriptional regulator [Acinetobacter baumannii AYE]
 gi|184159323|ref|YP_001847662.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213157694|ref|YP_002320492.1| two-component system DNA-binding response regulator [Acinetobacter
           baumannii AB0057]
 gi|215482449|ref|YP_002324635.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|239502332|ref|ZP_04661642.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB900]
 gi|260557267|ref|ZP_05829483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|301346205|ref|ZP_07226946.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB056]
 gi|301512563|ref|ZP_07237800.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB058]
 gi|301597175|ref|ZP_07242183.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB059]
 gi|332854188|ref|ZP_08435208.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013150]
 gi|332866379|ref|ZP_08436976.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013113]
 gi|332872585|ref|ZP_08440554.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6014059]
 gi|169147829|emb|CAM85692.1| transcriptional regulator [Acinetobacter baumannii AYE]
 gi|183210917|gb|ACC58315.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078207|gb|ABO13164.2| transcriptional regulator [Acinetobacter baumannii ATCC 17978]
 gi|213056854|gb|ACJ41756.1| two-component system DNA-binding response regulator [Acinetobacter
           baumannii AB0057]
 gi|213988084|gb|ACJ58383.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|260409373|gb|EEX02675.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|300915683|gb|ADK46841.1| PmrA [Acinetobacter baumannii]
 gi|300915687|gb|ADK46844.1| PmrA [Acinetobacter baumannii]
 gi|300915690|gb|ADK46846.1| PmrA [Acinetobacter baumannii]
 gi|300915693|gb|ADK46848.1| PmrA [Acinetobacter baumannii]
 gi|300915696|gb|ADK46850.1| PmrA [Acinetobacter baumannii]
 gi|300915699|gb|ADK46852.1| PmrA [Acinetobacter baumannii]
 gi|300915703|gb|ADK46855.1| PmrA [Acinetobacter baumannii]
 gi|300915707|gb|ADK46858.1| PmrA [Acinetobacter baumannii]
 gi|300915711|gb|ADK46861.1| PmrA [Acinetobacter baumannii]
 gi|300915715|gb|ADK46864.1| PmrA [Acinetobacter baumannii]
 gi|322509234|gb|ADX04688.1| Transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323519263|gb|ADX93644.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332728113|gb|EGJ59501.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013150]
 gi|332734663|gb|EGJ65768.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013113]
 gi|332739271|gb|EGJ70129.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6014059]
          Length = 224

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +  I L       +E  N+        +  + D+  ++  L       +
Sbjct: 4   ILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKTKFDLILLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  V
Sbjct: 62  QVLKQIRQRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   E+G + +  +      +G+   L  RE  IL  LM +  K  +K  +  
Sbjct: 122 EAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMTHPNKIFSKANLED 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 182 KLYD-FDSDVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 221


>gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium ulcerans Agy99]
 gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium ulcerans Agy99]
          Length = 240

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +    +           R D   ++  +   G    
Sbjct: 16  ILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMP--GMDGF 73

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + R ++A     P + ++   SLQ  +     G DD V KP    E++AR+  I RR  
Sbjct: 74  GVLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  N+R     I +  +  +    G+   L   E  +L Y + N G  ++K +I  
Sbjct: 134 KGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 HVW-RYDFGGDVNVVESYVSYLRRKI-DTGDKRLLHTLRGVGYVL 236


>gi|296535791|ref|ZP_06897952.1| response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296263859|gb|EFH10323.1| response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 259

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++     L   +G  + G  +        + +  D+  ++  L   G+  L
Sbjct: 27  ILVVEDDGEMRTLIAKLLRQNGFRVTGARNGAEMWDTMALSPVDLVLLDVMLP--GQSGL 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IRA S+VP+I ++        +   + G DD + KP    E+LAR+ A+ RR + 
Sbjct: 85  DLCRTIRARSEVPIIMVTARGEEADRVVGLELGADDYLPKPFSRPELLARIRAVLRRAQA 144

Query: 122 SNNRA--------ETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             NRA              + +  R+     G    L   E  +L     +  + +++ Q
Sbjct: 145 GANRAGMVSGDRMVFSDWVLDTRRRELAAPDGSAVDLSSGEYDLLLAFCEHPQRVLSRDQ 204

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +         ++V+   V+  +S+LR+KL         + + R  GY  
Sbjct: 205 LLDLARNRISDSVD-RSVDVMVSRLRRKLEPLPDSPAVIKTVRGAGYMF 252


>gi|226349426|ref|YP_002776540.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
 gi|226245341|dbj|BAH55688.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 224

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +        +G  ++     E  + L+ +   D   +   ++  G    
Sbjct: 3   ILLVEDEARLAETVRRGLTAEGFVVDVAR--EGCDGLEQAVTGDFDVVVLDIMLPGMHGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA     P++ +S         D FD G DD + KP     ++AR+ A+ RR  
Sbjct: 61  QILRELRARQVWTPVLMLSAKDGEYDQADAFDLGADDYLTKPFSFVILVARLRALLRRGA 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R      +V  L  RE  +LE+L+ N+G  V+K +I  +++ 
Sbjct: 121 PERPAILTAGNLALDPARRRVSRGEDVLALTPREYGVLEFLLRNKGDVVSKAEILRSVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   ++NVVE +I  LR+K+    G   +++ R +GY +
Sbjct: 181 -SNYDGDDNVVEVYIGYLRRKIDAPFGMATIETVRGVGYRL 220


>gi|119469337|ref|ZP_01612276.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonadales bacterium TW-7]
 gi|119447201|gb|EAW28470.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonadales bacterium TW-7]
          Length = 224

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +  S++  +  E   +  +    D++ ++  L       +
Sbjct: 3   ILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLP--KIDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL    RA    +P++ ++     Q  ++  D+G DD + KP H  E+ AR  A+ RR  
Sbjct: 61  ELINKARAQGVTIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELAARCNALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N     GPI++ +  +   V  +   L   E ++LEYLM N  K ++K+++   IY 
Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVDDKELTLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  + +LRKKL  +   +PV++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFVLRLRKKLDPEGTLNPVETLRGRGYRL 220


>gi|161505227|ref|YP_001572339.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866574|gb|ABX23197.1| hypothetical protein SARI_03365 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 222

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +        + G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELAVGNLTLNMGRHQAWMDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|332529947|ref|ZP_08405898.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040644|gb|EGI77019.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 250

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 27/243 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED------VSAIEAFLIG 55
            ++I+D A +           G +++   +         ++ +       +  ++  L  
Sbjct: 6   LLMIEDDARLAAMVRDYLAPSGFAVQHAGTGAAGLAKLGASPQGAEQAPQLIVLDLMLPD 65

Query: 56  KGEKVLELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
                L++ R IR    A +  P++ ++        +   + G DD + KP   RE+LAR
Sbjct: 66  --MDGLDICRRIRSLPGATAHTPILMLTAKGDPMDRVIGLEIGADDYLAKPFEPRELLAR 123

Query: 112 VAAIYRRLKVSNNRAET-------------GPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           V A+ RR   S+    T             G + +  D R   VQG    L   +  +L 
Sbjct: 124 VRALLRRHAQSSTSLSTDEGTGSGHPPLHFGSLTIDRDARTVTVQGRSCELTSYQFDLLV 183

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLG 217
            L    G+ + + QI  A+ G   EA +   ++ H+ ++R  +  +      + + R +G
Sbjct: 184 TLAERAGRVLTREQIMEAVRGRELEAFD-RSIDVHMGRIRAAIEADPKAPKRILTVRGVG 242

Query: 218 YSI 220
           Y  
Sbjct: 243 YVF 245


>gi|302537327|ref|ZP_07289669.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302446222|gb|EFL18038.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 234

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 23/234 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGK 56
            +L++D   V     A+    G  +    +   EE LQ+     +    V  ++  L  +
Sbjct: 3   LLLVEDDDHVAAALSAILARHGFRVTHARN--GEEALQALLPAGAKPFGVVLLDLGLPDQ 60

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ 
Sbjct: 61  --DGYEVCGKIRKRTSTPVIMVTARGDVRSRIHGLNMGADDYVVKPYDTGELLARIHAVA 118

Query: 117 RRLKVSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           RR   ++               GP+ V    R   V G   PL R+E  +L  L    G 
Sbjct: 119 RRTGATDEGAATPETAPGTVRLGPVAVELPTRRVTVNGTDVPLTRKEFDLLALLAQRPGV 178

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + QI S ++    E      +E H++ LR KL        +++ R +GY +
Sbjct: 179 VFRREQIISEVWRTSWEGTG-RTLEVHVASLRSKLGMPA---LIETVRGVGYRL 228


>gi|333024984|ref|ZP_08453048.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744836|gb|EGJ75277.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 260

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 40  LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLP--GMDGLE 97

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +RA    VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 98  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 218 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 258


>gi|311746326|ref|ZP_07720111.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Algoriphagus sp. PR1]
 gi|311302500|gb|EAZ80840.2| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Algoriphagus sp. PR1]
          Length = 234

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         D G  ++  N       + +S   D+  ++  L       + 
Sbjct: 7   LVVEDDPNISHLIQIHLNDLGYQIQVCNHGREGFEIANSNPFDLIILDIMLPE--MDGIA 64

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + + +RA     P++ I+        +   +SG DD + KP   RE +ARV AI RR   
Sbjct: 65  ICQKLRALDNFTPILMITAKSEEIDKVIGLESGADDYITKPFKIREFIARVKAIMRRQDQ 124

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    ++ +   + +    R   +  +   L  +E  +L  +  N G+  ++ ++ 
Sbjct: 125 FNMVASKEADQLQFNSLEIDEKKRKVLLDEKRMDLTPKEFDLLVLMAKNPGRSYSRGELL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             I+G +D +  E+ V +HI++LR K+  +    + + +   +GY  +
Sbjct: 185 ELIWG-YDFSGYEHTVNAHINRLRAKIEKDPNNPNFILTTWGVGYRFN 231


>gi|302521367|ref|ZP_07273709.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302430262|gb|EFL02078.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 260

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 40  LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLP--GMDGLE 97

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +RA    VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 98  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 218 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 258


>gi|302035689|ref|YP_003796011.1| heavy metal response regulator [Candidatus Nitrospira defluvii]
 gi|300603753|emb|CBK40085.1| Heavy metal response regulator [Candidatus Nitrospira defluvii]
          Length = 223

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V         ++  +++          +  S   D+  I+  L       LE
Sbjct: 4   LVVEDETKVGSFIKRALEEESYAVDLCEDGAQGLDMALSGSYDLIMIDLMLPS--LPGLE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +   +R    Q P++ ++    +   +   D+G DD + KP    E+LARV A+ RR   
Sbjct: 62  VLTRLRKEKIQTPVLILTAQSKVDQRVKGLDAGADDYLTKPFAIDELLARVRALLRRGTA 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+   +   + +    R+    G+   L  +E  +LEY M + G+ + +  I   ++  
Sbjct: 122 ESSGTLQIDDLLLNPATREVTRGGQRIDLTVKEYALLEYFMRHAGRVLTRPMISDHVWNQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D     NV++ +++ LR K+        + + R  GY +  +
Sbjct: 182 -DFDTFTNVIDVYVNYLRNKIDRGRARKLIHTIRGSGYMLKVD 223


>gi|295093611|emb|CBK82702.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++  G        G  +E   S +  +        D+  ++  L     + L
Sbjct: 4   ILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEADGCLEHG-FDLILLDRNLPD--GRGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R +R  ++VP+I ++   +    ++ F +G DD + KP     +  R+ A+ RR + 
Sbjct: 61  DYCRELRKSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVLRRSEN 120

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +       R   G + V  +     +  E   L   E RILE L+ N+G+ + +  I   
Sbjct: 121 ALDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           I+   +  V+EN +  HI +LR+K+    G  + V +   +GY+ 
Sbjct: 181 IWDDNENYVDENTLNVHIRRLRQKIEKDAGNPEYVITVFGIGYTF 225


>gi|295133762|ref|YP_003584438.1| two component transcriptional regulator winged helix family protein
           [Zunongwangia profunda SM-A87]
 gi|294981777|gb|ADF52242.1| two component transcriptional regulator, winged helix family
           protein [Zunongwangia profunda SM-A87]
          Length = 222

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 99/218 (45%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++  +++  ++ +    L  + + D+  ++  L   G   +
Sbjct: 3   ILIVEDETGISGFLKQGLEEESFAVDIADNGKKGLELALTGKYDLLLLDWMLP--GLSGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  R    + P++ ++   ++  T+    SG +D + KP H  E+L R+    R   
Sbjct: 61  EICRQFRKEDKETPVLFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIKVQLRPKS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     GPI + +        G+   L  +E  +LEYL+ N+ +   +T+I   ++ +
Sbjct: 121 GEHAIFSLGPIELNTGTHQAFKNGKEVNLTLKEFALLEYLIRNKERVCTRTKIIEKVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + +    V++ +I+ LR+KL      + + + R +GY
Sbjct: 181 -NFSYNTGVIDVYINALRRKLDLDQDENYIQTVRGVGY 217


>gi|219848680|ref|YP_002463113.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542939|gb|ACL24677.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 226

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD          +  + G  +   +       +      D+  ++  +        
Sbjct: 3   ILVVDDDIPSAKLTSYVLEEAGYRVLRAHDATSIMQMIEQHNPDLILLDIMMP--KIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S+VP+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DVCRQIRRSSEVPIIFLSARSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRNA 120

Query: 122 ----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++ R   G I +           G    L   E R+L YLM N G+ +  +QI S 
Sbjct: 121 DVLNTSTRLSQGDITLDPVEHKVIFTDGRTVELTPLEFRLLYYLMKNAGRILNVSQILSK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++G +D   E N+V  +I +LR K+  N      V + R LGY  +
Sbjct: 181 VWG-YDYEGESNLVAVYIRRLRTKIEENPNNPRHVITVRNLGYKFE 225


>gi|85704878|ref|ZP_01035979.1| two-component response regulator [Roseovarius sp. 217]
 gi|85670696|gb|EAQ25556.1| two-component response regulator [Roseovarius sp. 217]
          Length = 223

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A           ++G S++  ++        +S   DV  I+  L       L
Sbjct: 3   LLVVEDDATTGAYIARGLREEGQSVDLVSNGRDALIQATSGPYDVLIIDRMLPE--IDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A +  P++ ++   S+   +   ++G DD + KP    E+ ARVAA+ RR  
Sbjct: 61  TLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRPH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       GP+ +    R    +     L  RE  ILE+LM  +G+   +T +  AI+
Sbjct: 121 ALDQETMLRAGPLEMDLIARKVTRERHEIDLLPREFAILEHLMRRKGRVQTRTMLLEAIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      D + + R  GY ID
Sbjct: 181 DIS-FDPMTNVVETHISRLRAKVDRPFATDLIKTVRGAGYRID 222


>gi|154500201|ref|ZP_02038239.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC
           29799]
 gi|150270933|gb|EDM98207.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC
           29799]
          Length = 233

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +      +  D G      F+  E   W   + + D   I   L+  G   
Sbjct: 6   ILVVEDDQDINRLLCKILEDGGYCCRPAFSGSEAMLW---AGQYDYDLILLDLMLPGLTG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E    +R    +P+I +S    L++ ++    G DD + KP  + E+LARV A  RR +
Sbjct: 63  EEFIAELRKSRTMPIIVLSAKAGLESRVNVLKLGADDFIPKPFDNAEVLARVEAQLRRYR 122

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +    G + +  +       G+   +  RE  IL  LM+   K   + Q++
Sbjct: 123 QFSSPAGEKHVLTWGDLILDKESVSVTAAGKDVTVTAREFEILALLMSYPKKVFTREQLY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G  +   ++N V  HIS LR KL      + + +   +G+ ++
Sbjct: 183 EQVWGG-EYFGDDNTVNVHISNLRSKLAKVSSAEYIKTVWGIGFKMN 228


>gi|153954764|ref|YP_001395529.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347622|gb|EDK34158.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 228

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 99/225 (44%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++   + +    L+ + +     I   ++      +
Sbjct: 6   ILIVEDEIKIARFVQLELEHEGYMVD--QTGDGRVGLEKALKGGYDLIILDVMLPSLNGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S++P+I ++    +   +   D G +D + KP    E+LAR+  +++    
Sbjct: 64  EVLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 123

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                NN    G +++         +     L ++E  +L+YLM N+   +++  I   +
Sbjct: 124 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   + N+V+ +I  LR K+ +K     + + R LGY   +
Sbjct: 184 WG-YDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQFRY 227


>gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 230

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +            + +   ++  L       +
Sbjct: 4   ILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPE--MDGM 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P+I ++        +   + G DD + KP   RE++AR+ A+ RR +
Sbjct: 62  TVLKQLRQDKVSTPIILVTAKGDEFDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQ 121

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           VS +             + +    +    +  V  L  RE  +L Y     G+ + +  I
Sbjct: 122 VSTDTNKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
            +A++G ++   E  +V+ HIS LR K+ +      +  + R  GY++
Sbjct: 182 LTAVWG-YEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGYTM 228


>gi|148548790|ref|YP_001268892.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|148512848|gb|ABQ79708.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
          Length = 226

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A           + G + E     E  ++L  +   D+  ++  L   G    
Sbjct: 3   LLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLP--GRDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +R      P++ ++   +++  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       +R+    R  E  G    L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLE 222


>gi|255101735|ref|ZP_05330712.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307604|ref|ZP_05351775.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 238

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 93/235 (39%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G ++  F      E L+    +++      ++      +
Sbjct: 6   ILVVEDEKEIADAIEIYLLNQGYNV--FKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            L   +R +   P+I +S        +   + G DD V KP    E+LARV +  RR   
Sbjct: 64  TLTMKLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTK 123

Query: 120 ------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                       +  ++    G + +  + ++  + G+       E +IL  LM N G+ 
Sbjct: 124 YLNMVGNKEQKVESDDSVFAIGGLELNENTKEVSIDGKYIKTTPIEFKILSLLMRNAGRV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +  +I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 184 FSADEIYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 236


>gi|215429436|ref|ZP_03427355.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis EAS054]
 gi|289752642|ref|ZP_06512020.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis EAS054]
 gi|289693229|gb|EFD60658.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis EAS054]
          Length = 253

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++                 D   ++  L   G    
Sbjct: 25  ILVVEDEPKMTVLLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLP--GIDGF 82

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+  R+ R     P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G +R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              EA   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 203 AAYEAR-SNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242


>gi|6318168|emb|CAB60254.1| MrsR2 protein [Bacillus sp. HIL-Y85/54728]
          Length = 240

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +  I  F  +G S +    +             ++  ++  L       
Sbjct: 8   ILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVMLPDT--DG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L   IR+H+ VP++ ++   +    L  F  G DD + KP +  EI+ARV A  +R  
Sbjct: 66  FTLCSKIRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRTT 125

Query: 121 VSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             ++        +    ++  +     V G     P +E ++L Y   +  + ++K QI+
Sbjct: 126 QLSSSYPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIY 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             ++G F     ++ V  H+ +LR+KL         + + R  GY  +
Sbjct: 186 KDVWGEF--YGGDSTVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIFE 231


>gi|315640403|ref|ZP_07895515.1| response regulator [Enterococcus italicus DSM 15952]
 gi|315483841|gb|EFU74325.1| response regulator [Enterococcus italicus DSM 15952]
          Length = 229

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++G   ++ +N  E    +++    ++  ++  +       
Sbjct: 3   ILVADDDKEIVELLSIYLKNEGYEPIQAYNGREALSKVRTINDIELLILDIMMPEV--DG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ +I+R  SQ+P+I ++   +    +    +G DD V KP +  E++ARV ++ RR  
Sbjct: 61  MQVVKILRKESQLPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRST 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +       +  E   + +  D  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 MQVTADQPDVLEVSSLIINRDSHEVKTLDGKDIQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ID
Sbjct: 181 ERVWKQ-ESVVSAKTVMVHVSHLRDKIEEATGGEKIIQTVWGVGYKID 227


>gi|294636784|ref|ZP_06715122.1| DNA-binding response regulator PhoP [Edwardsiella tarda ATCC 23685]
 gi|291089999|gb|EFE22560.1| DNA-binding response regulator PhoP [Edwardsiella tarda ATCC 23685]
          Length = 224

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++   + +  ++       D++ ++  L   GE  L
Sbjct: 3   ILVVEDNNLLRHHLAVQMRELGHQVDAAENAKEADFFVREQTPDIAIVDLGLP--GEDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R     +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SLIRRWRSEQVTLPILVLTARESWQEKVTVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P +V    R+  V   +  L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIISLPPFQVDLSRRELRVDDTLIKLTAFEYTIMETLIRNNGKVVSKDALMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKKL+     + + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQQAFPAEVITTVRGQGYRFDV 222


>gi|291549052|emb|CBL25314.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 232

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 93/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +  F + +  E L+   +E++      ++      + 
Sbjct: 7   LIVEDDKEIREGVQIYLQSQGYKV--FQAADGIEGLEVLEKEEIHLAIIDIMMPRMDGIR 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           +   +R     P+I +S        +   + G DD V KP    E++ARV +  RR +  
Sbjct: 65  MTMKLREKYDFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYRRF 124

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N    G + +  D  +  + G    L   E +IL  L  N G+  +  +I+ 
Sbjct: 125 LEKLVPQENVHVIGGLEINEDTVEVTMDGNPVKLTPIEYKILLLLAKNPGRVFSSEEIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   ++A+  + +  H+  +R+K+  +      +     +GY ++
Sbjct: 185 RVWQ--EKAINTDTIMVHVRNIREKIEIDPKKPKYLKVVWGVGYKLE 229


>gi|255284065|ref|ZP_05348620.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
 gi|255265410|gb|EET58615.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
          Length = 235

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++G   L   +G  +E   +       + +    +  ++  +   G   +
Sbjct: 6   ILMIEDDPAIREGVRILLEGEGYHVEEAENGRM-GLEKLTENTHLVILDIMMP--GISGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S VP++ ++        +    +G DD + KP  + E+LARV A+ RR  V
Sbjct: 63  RTCEEIRKVSNVPVLFLTAKEQESDKVIGLTAGGDDYLVKPFSYAELLARVKALLRRRNV 122

Query: 122 SNNRAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +  A+            G IR+ +      V+GE   L   E R+L   M    K  + 
Sbjct: 123 YDKAAQEEKSNLPEWLKKGDIRICTIQNSVFVRGEEVNLTELEYRLLLLFMEYPQKIFSA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             ++ + +    +    N V  HI +LRKK+  +      +++    GY +
Sbjct: 183 RNLYESAWEEPFDLGSANTVMVHIRRLRKKVEEDAQNPKLIETVWGKGYRL 233


>gi|210622831|ref|ZP_03293375.1| hypothetical protein CLOHIR_01323 [Clostridium hiranonis DSM 13275]
 gi|210154048|gb|EEA85054.1| hypothetical protein CLOHIR_01323 [Clostridium hiranonis DSM 13275]
          Length = 228

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +  G        G  ++   +++  E L  + + D++ ++  L        
Sbjct: 4   IFFVEDDLSLISGLSFALKKQGYEVDNARTIDEAEKLWQNNKYDLAILDISLPD--GSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L   IR +S++P+I ++        +   D G DD + KP      L++V AI RR   
Sbjct: 62  QLCEKIRLNSKIPIIFLTAADEETDIIMGLDMGADDYITKPFKLAVFLSKVNAILRRSND 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N    +  I V     D    GE   L   E ++L   M N    +++ QI   ++
Sbjct: 122 FNQKNTVLNSNGISVNLLNGDVTKNGETLNLTSGEYKLLCLFMENPNIILSQEQILGKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
              ++ ++ + +  +I +LRKK+ +       + + R +GY   WN
Sbjct: 182 DSNNDFIDNSTLTVYIRRLRKKVEDDPSNPTNIVTVRRMGYK--WN 225


>gi|167037240|ref|YP_001664818.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256751995|ref|ZP_05492864.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|320115659|ref|YP_004185818.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856074|gb|ABY94482.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749105|gb|EEU62140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|319928750|gb|ADV79435.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 234

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G  +    + +         + D+  ++  L       LE
Sbjct: 6   LVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAFEGKPDLVILDLMLPDV--DGLE 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +I++ +     +P+I ++        +   + G DD + KP   RE+LAR+ A+ RR 
Sbjct: 64  ICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRT 123

Query: 120 KVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          + G I + +       +G+V  L  +E  +L+ L  N GK + +  +  
Sbjct: 124 QQPEEEKEEIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            ++G ++ A E   V+ HI  LRKK+ +       +++ R +GY ++
Sbjct: 184 KVWG-YEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLN 229


>gi|47096766|ref|ZP_00234349.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254829514|ref|ZP_05234201.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254900963|ref|ZP_05260887.1| hypothetical protein LmonJ_14151 [Listeria monocytogenes J0161]
 gi|254913823|ref|ZP_05263835.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254938212|ref|ZP_05269909.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|47014852|gb|EAL05802.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601929|gb|EEW15254.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610824|gb|EEW23432.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|293591840|gb|EFG00175.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 225

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+  +        
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPN--MDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA +  +P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR  
Sbjct: 62  ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLE 222


>gi|332992601|gb|AEF02656.1| two component transcriptional regulator [Alteromonas sp. SN2]
          Length = 237

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD A +          DG ++E  NS +     L  S   D   ++  +   G   
Sbjct: 8   ILLVDDDAELCALLSEFLQTDGFAVETLNSGDAAVARLLQSDEFDTVVLDIMMP--GMSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +RA  Q P++ ++        +   + G DD + KP + RE+ AR+ AI RR +
Sbjct: 66  LDVLRNVRAKKQTPILMLTGRGDDIDRILGLEMGADDYLAKPCNPRELGARIRAIIRRTQ 125

Query: 121 VSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N        AE   I + S  R   V     PL   E   L  LM   G+ + K ++ 
Sbjct: 126 NGNAPTQTVVHAELHGIVLDSGARTALVDNTPLPLTGAEFNALSLLMERVGQTITKQEMT 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     EA +   ++ H+S++R+KL      D + S R +GY +
Sbjct: 186 EEVLNRPLEAYD-RAMDVHVSRIRQKLTAVGINDVIKSVRGVGYQM 230


>gi|332711870|ref|ZP_08431800.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332349198|gb|EGJ28808.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 230

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ +       +    ++   + E           D+  ++  L        
Sbjct: 3   ILLVEDDILLAENLSEALTNQRYVVDLVTNGEIACQQSQMLDYDLMVLDLTLP--KLDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA   Q+P++ ++   +    +   D+G DD + KP+   E+ AR+ A+ RR +
Sbjct: 61  GVCRKLRAQGYQMPILMLTGRDTTNDKVKGLDAGADDYLVKPVDLPELFARIRALLRRGQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++    + G +R+     +     +     R+E  +LE+L+ N  + + ++ I   ++ 
Sbjct: 121 SIAPPVLKWGDLRLDPSTYEVSYAHQPIHFTRKEYSLLEFLLRNGRRVLTRSVIIEHVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            F+   EE  V ++I  LR+KLR      D +++   +GY +
Sbjct: 180 SFENPPEEETVNAYIKSLRRKLRLAGAPRDLIETVHSVGYRL 221


>gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 244

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 104/227 (45%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          DG  +   +   E  E +++    D+  ++  L       
Sbjct: 10  ILVVDDEERMVRFIRLNLEHDGFQVISAYRGYEALEKVRTEM-PDLVLLDVMLPD--LDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ ++IR  S  P+I ++        +   + G DD + KP   RE+++RV A+ RR++
Sbjct: 67  FEVLKLIRESSNTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRRVE 126

Query: 121 VS-----NNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +     N   +    +++    R+  V+G +  L   E R+L +L+ N G  +   Q+ 
Sbjct: 127 ATSLTAKNEIIQVDDRLKIDFGRREVWVEGNLVKLRPTEYRLLYHLVQNAGWVMTYEQLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + ++G ++   EE+ V  +++ LR+K+  +      + ++R +GY  
Sbjct: 187 TKVWG-YEYRDEEHYVRLYVNYLRQKIEEDPSNPKYILTERGVGYRF 232


>gi|229191306|ref|ZP_04318292.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228592111|gb|EEK49944.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
          Length = 225

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIMMPFV--DGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            D   +E  V+ H+ +LR +   +     + + R LGY ++ N
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLELN 225


>gi|80973243|gb|ABB53349.1| VanRB [Eggerthella lenta]
          Length = 219

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   A   + G  ++                  +  ++  L   G    
Sbjct: 5   ILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLP--GMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   + + V +HI  LR KL      + + + R +GY ++ +
Sbjct: 182 DFESDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEES 219


>gi|51596319|ref|YP_070510.1| transcriptional activator [Yersinia pseudotuberculosis IP 32953]
 gi|186895361|ref|YP_001872473.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis PB1/+]
 gi|51589601|emb|CAH21231.1| transcriptional activator [Yersinia pseudotuberculosis IP 32953]
 gi|186698387|gb|ACC89016.1| two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia pseudotuberculosis PB1/+]
          Length = 230

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   +     +L      D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSSYINRALSELGFTVDVAATGNDGLYLALEYDYDTIVLDVMLP--GMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  SVLEGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPS 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  ++     + +    R     GE   L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDTPYPVKLLHTVRGMGYVLE 222


>gi|319795275|ref|YP_004156915.1| two component heavy metal response transcriptional regulator winged
           helix family [Variovorax paradoxus EPS]
 gi|315597738|gb|ADU38804.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus EPS]
          Length = 235

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G +++  ++    + L  +   DV  ++  L   G+   
Sbjct: 3   ILIVEDELRTADYLSKGLTEQGCTVDAAHNGIDGQHLALTHDYDVIVLDVMLP--GQDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA  Q P+I ++    ++  +     G DD + KP    E+LAR+ A+ RR + 
Sbjct: 61  AVLRALRAVKQTPVIMLTARDRVEDRIKGLHEGADDYLVKPFSFLELLARLQALNRRGRK 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     +++    R          L  +E  +L  L   +G+ ++KT I   ++ +
Sbjct: 121 QEPVQLRIANLQIDLLARKAFRGATRIDLTAKEFALLAVLARRQGEILSKTAIAELVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 -NFDSNTNVVEVAIKRLRDKIDAPFSPKLLHTIRGMGYVME 220


>gi|296128518|ref|YP_003635768.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020333|gb|ADG73569.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 235

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D    +D      G +G  +    +    E L+  A      +   L+  G    
Sbjct: 4   ILLVEDEESYRDPLSYQLGREGYDV--VTAATGPEALERFAEHGADLVLLDLMLPGLPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++        +   + G DD V KP   RE+LAR+ A+ RR   
Sbjct: 62  EVCRRLRLDSDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRRDT 121

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S         +   E G +R+  D     V GE+ P P +E  +LE L+ N  + + + Q
Sbjct: 122 SARPADDPEDDGVLEVGAVRMDVDRHTVHVHGELVPFPLKEFELLELLLRNPDRVLTRGQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   ++G  D   +   ++ H+ ++R K+ R+      + + R LGY +
Sbjct: 182 LIDRVWG-SDYVGDTKTLDVHVKRIRAKIERDPSAPTLLTTVRGLGYKL 229


>gi|229012458|ref|ZP_04169633.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229167897|ref|ZP_04295628.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228615537|gb|EEK72631.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228748817|gb|EEL98667.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFV--DGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTIIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|161779855|gb|ABX79416.1| VanRc4 [Enterococcus casseliflavus]
          Length = 231

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E F               DV+ ++  L        
Sbjct: 5   IIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR     P++ ++        +     G DD V KP +  E++ARV    RR + 
Sbjct: 63  QLLQTIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  A        E   + +  +     + G+   L   E +IL YL  ++G  VA   +
Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F A++         N V +HI++LR+KL         + +   +GY I+
Sbjct: 183 FEAVWKEK-YLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIE 230


>gi|262281227|ref|ZP_06059009.1| two-component system DNA-binding response regulator [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257458|gb|EEY76194.1| two-component system DNA-binding response regulator [Acinetobacter
           calcoaceticus RUH2202]
          Length = 224

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +  I L       +E  N+        +  + D+  ++  L       +
Sbjct: 4   ILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  +  P++ IS    LQ  +D  ++G DD + KP    E+LAR+ A+ RR  V
Sbjct: 62  QVLKQIRQRAATPVLIISARDQLQNRVDGLNNGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      ++G + +  +      +G+   L  RE  IL  LM++  K  +K  +  
Sbjct: 122 EAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 182 KLYD-FDSDVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 221


>gi|253579802|ref|ZP_04857070.1| DNA-binding response regulator [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848801|gb|EES76763.1| DNA-binding response regulator [Ruminococcus sp. 5_1_39BFAA]
          Length = 228

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L DD +L+ +G    F   G  L    +L+  E L +  + D+  ++  L       
Sbjct: 4   ILLLEDDLSLI-NGLSFAFKKQGFELNIARTLKEAEELWTDGKYDLLVLDVSLPD--GSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E  + +R  S+VP+I ++      + +   D G DD + KP     +++R+ A+ RR  
Sbjct: 61  FEFCKRVRLTSKVPIIFLTASDEETSIIMGLDIGGDDYITKPFKLGVLVSRINALLRRAN 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + ++   ++  I+V          GE+  L   E ++L   M N    + K QI   +
Sbjct: 121 SFQAADTELQSNGIKVLLLQGQVFKNGELLDLTAAEYKLLCLFMRNPSMVLTKGQILDKL 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           +      ++ + +  ++ +LR K+ +       + + R +GY   WN
Sbjct: 181 WDCDGNYIDSSTLTVYMRRLRMKIEDNPSEPQMLLTVRGMGYK--WN 225


>gi|255658861|ref|ZP_05404270.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
 gi|260849265|gb|EEX69272.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
          Length = 230

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            +      +  + ++++       +   L+  G    
Sbjct: 4   ILIVEDDREIAELERDYLEASDFEV--AIEGDGRKGVEAALAGGFDLVILDLMLPGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P+I +S   +    +  F  G DD + KP    E++ARV A   R + 
Sbjct: 62  NVCRRLREELDIPVIIVSARQTDIDKIRGFGLGADDYMTKPFSPSELVARVKAHIARYEQ 121

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                     R   G + + +        GE   L  RE  +L +LM NRG   ++  +F
Sbjct: 122 LTRKEQQCVARLSCGKLALEAKSHRVFKDGEEIHLTNREFELLRFLMENRGLVFSRETLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+GL D   +   V  HI+++R+K+  +      +++ R  GY  
Sbjct: 182 ERIWGL-DAMGDNATVAVHINRIREKIETDPAHPAYIETVRGAGYRF 227


>gi|83718618|ref|YP_441229.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83652443|gb|ABC36506.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 241

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ DG       DG +++     +    L +   E    +   L       +
Sbjct: 24  ILLVEDDRMIADGVRKALKADGCAVDWVQDGDA--ALTALGGEAYDLLLLDLGLPKRDGI 81

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 82  DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 141

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 142 GRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 201

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 202 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 237


>gi|323342046|ref|ZP_08082279.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464471|gb|EFY09664.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 222

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           F+++DD   +++         G+  +  +       +  S   DV  ++  +        
Sbjct: 4   FLIVDDEEKIREVAKEYAKATGLLCDEASDGAEAIEMVKSNDYDVVVLDIMMPN--LDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R I+    VP+I +S        L  F+ G+DD V KP   +E++AR+ A+  R K 
Sbjct: 62  TACREIKKIKDVPIIMLSARQEEFDKLLGFELGIDDYVTKPFSPKELMARIKAVSERAKG 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G + V   GR+  + GE   +  +E  +L +L+ ++ + +++  +   ++  
Sbjct: 122 MKHSVYSFGGLEVDITGRNLIIDGERINVTPKEFDLLVFLIQHKDQALSRDVLLDKVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   +   V++HI  LR+ L      D + + R  GY  + N
Sbjct: 181 YNYYGDYRTVDTHIKMLRQNLGPY--RDYIVTVRGTGYKFEIN 221


>gi|291614947|ref|YP_003525104.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
 gi|291585059|gb|ADE12717.1| two component transcriptional regulator, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 224

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG        G +++          + S  +  D+  ++  L       
Sbjct: 3   ILIAEDDEVLSDGLCHSMRQSGYAVDCVKDGHSANLILSGEQPFDLVILDLGLPKV--DG 60

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             + R +R  + QVP+I ++   +    +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 61  FSVLRSLREKNRQVPVIILTARDAEGDRVKGLDLGADDYMIKPFSLPELEARVRALIRRG 120

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   N     G +   S GR   + G    L  RE  +LE LM   G  V+K Q+   +Y
Sbjct: 121 QCGVNPVYSCGTLTFDSVGRRASINGTTLELTTRELSVLEALMLRTGWVVSKEQLLERLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E    N +E +I +LRKK+        + + R LGY I+
Sbjct: 181 -SYAEEASNNAIEVYIHRLRKKIEPAG--VTIRTIRGLGYVIN 220


>gi|229494209|ref|ZP_04387972.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
 gi|229318571|gb|EEN84429.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
          Length = 237

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++   +               +  ++  L   G   LE
Sbjct: 15  LVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLP--GFDGLE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ +S        +    +G DD V KP   RE++ARV A+ RR + S
Sbjct: 73  VCRRIRTFSDAYVLMLSARGDESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRAS 132

Query: 123 NNRAETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   E  P    + +    R   V      L   E  +L  L        ++  I ++++
Sbjct: 133 SMLPEALPTPPGLDIDVLARTVHVDNRPVDLTPTEFALLSALATRPDAAWSRADIIASVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      ++++V+ H+  LR+KL  +      + + R +GYS+
Sbjct: 193 GSP-WFGDQHIVDVHVRALRRKLGDDATDPRFIRTVRGVGYSL 234


>gi|307153686|ref|YP_003889070.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306983914|gb|ADN15795.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 230

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 104/227 (45%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQS-SAREDVSAIEAFLIGKGEK 59
            +L++D   + +            ++   +  E    L+S     +++ ++  L   G  
Sbjct: 3   ILLVEDEPDLGEALKKALNQKKYIVDWVQDGAEAWTCLESQWTEYNLAIVDWLLP--GIS 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L++ + +R     +P++ ++    ++  +   D+G DD + KP    E+LAR+ A+ RR
Sbjct: 61  GLDIIKRLRKQKNSLPVLMLTAKDQMEDKVIGLDAGADDYLIKPFGMAELLARLRALGRR 120

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++   + + G + +    R    +  +  PL  +E ++LEY   +  + +   QI + 
Sbjct: 121 SPQLQPQQFQRGLLILDYGTRTVYYKNHQTLPLTTKEFQLLEYFFNHPNQILTSEQIRNH 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++ + +E +  NVV + +  LR+KL      + +++   +GY  + N
Sbjct: 181 LWEMGEEPL-SNVVAAQVRLLRRKLETVGSKNSIETVHGVGYRFNLN 226


>gi|51094316|gb|AAT95326.1| response regulator [Bifidobacterium breve UCC2003]
          Length = 243

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +++  +A     G  +    S      +    + D+  ++  L        
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPD--IDGF 66

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR      P++ ++     Q  +     G DD V KP    E++AR+ AI RR +
Sbjct: 67  TVTRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  D  D    G+   L   E + + YLM N G+ ++K QI   +
Sbjct: 127 EQVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKFVRYLMDNEGRVLSKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220
           +  +D   +  +VES+IS LRKK+      D           +++KR +GY I
Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238


>gi|240169874|ref|ZP_04748533.1| two component transcriptional regulator TrcR [Mycobacterium
           kansasii ATCC 12478]
          Length = 254

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  +E  ++             DV  ++  L       L+
Sbjct: 32  LLVDDEPALTNLVKMALHYEGWDVEIAHNGREAIAKFERISPDVLVLDIMLPDV--DGLQ 89

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + +R      P + ++   S+   +    +G DD + KP    E++AR+  + RR   
Sbjct: 90  ILQRVRESDDYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSSH 149

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++   + G +++ +  R+    G    L   E  +L +LM N  + +++T+I   +
Sbjct: 150 LAPPADESLKVGDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILDRV 209

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D A   ++V+ +IS LRKK+        + + R +GY +
Sbjct: 210 WN-YDFAGRTSIVDLYISYLRKKIDADRDP-MIHTVRGIGYML 250


>gi|226324729|ref|ZP_03800247.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
 gi|225207177|gb|EEG89531.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
          Length = 235

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +  F + +  E L+   +E++      ++      + 
Sbjct: 7   LVVEDDKEIREGVEIYLKSQGYEV--FQAADGIEGLEVIEKEEIHLAIVDIMMPRMDGIR 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR ++ 
Sbjct: 65  MTMKLREKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRRYRMF 124

Query: 123 NNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +             G + +     +  V GE   L   E +IL  LM + G+  +  +
Sbjct: 125 AEKLRDREENQNIHVIGGLELNEATVEVSVDGEPVRLTPIEYKILLLLMKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           I+  ++   ++A+  + +  HI  +R+K+ +       +     +GY I+
Sbjct: 185 IYERVWN--EKAINTDTIMVHIRNIREKIESCPKEPKYLKVVWGVGYKIE 232


>gi|170761752|ref|YP_001787320.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408741|gb|ACA57152.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 229

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G  +    +    E ++   + D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFEDQGYRV--ITASNGREAIEYCDK-DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QICQKIRDKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + ++     + +  + R    + E      +E  I+E L  +  +  +K QI+  +
Sbjct: 122 VPLNNRSKISFEKLTLDINSRKVHYEEEEILFTAKEFDIIELLALHPEQVFSKEQIYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + N V  HI K+R KL +     + + +   +GY  + N
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKLIKRNASLNHIATVWGVGYRWEKN 227


>gi|77360226|ref|YP_339801.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875137|emb|CAI86358.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 224

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +  S++  +  E   +  +    D++ ++  L       +
Sbjct: 3   ILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLP--KIDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL    RA    +P++ ++     Q  ++  D+G DD + KP H  E++AR  A+ RR  
Sbjct: 61  ELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N     GPI++ +  +   V  +   L   E ++LEYLM N  K ++K+++   IY 
Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  + +LRKKL  +   +PV++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFVLRLRKKLDPEGVLNPVETLRGRGYRL 220


>gi|325264313|ref|ZP_08131044.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030384|gb|EGB91668.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 231

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + +  E L+    EDV  +   ++      +
Sbjct: 4   ILVCDDDKEIVEAIEIYLSQEGYHV--LKAYDGAEALKMLESEDVHLLVLDVMMPRLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR ++ +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 62  RATLKIRENNSIPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQ 121

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + S    E G + +  D ++  V GEV  L   E  IL  LM N+G+  +  QI
Sbjct: 122 LGGSVKEKSERVYEVGGLAINDDLKEVTVDGEVVKLTPIEYNILLLLMKNQGRVFSIDQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +I+   D    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 182 YESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIE 229


>gi|313900503|ref|ZP_07833996.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312954565|gb|EFR36240.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 231

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++   ++   +         +   D++ ++  L        
Sbjct: 5   ILVVDDEKEIAGLVEIYLKNENYKVDVCYTGTQALQNIRTRSYDLAILDVMLPD--MDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR +   P+I ++        ++    G DD + KP    E++ARV A  RR K 
Sbjct: 63  SICRTIRQNYTWPIIMLTAKEQDIDKINGLMIGADDYMTKPFQPLELIARVKAQLRRYKR 122

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N            + +  +     +  +   L   E R+L YL   +GK V+  ++++A
Sbjct: 123 YNVQQKAKELSYLGLVMNQEQHICRLNEKDLNLTPIEFRLLWYLCERQGKVVSARELYTA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           I+     +   N +  HI  +R+K++++      + +   +GY +
Sbjct: 183 IWQEEYLSSSNNTLMVHIRHIREKMKDRGEHPRYIQNVWGVGYKL 227


>gi|255022542|ref|ZP_05294528.1| two-component response regulator [Listeria monocytogenes FSL
           J1-208]
          Length = 225

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 90/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +    +  ++ I+  +        
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVELEQVHLAVIDVMMPN--MDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA    +P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR  
Sbjct: 62  ELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D    +  V+ HI +LR           + + R +GY ++
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEDKDGIRIVTVRGVGYKLE 222


>gi|188579674|ref|YP_001923119.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179343172|gb|ACB78584.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 232

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +  F + G +++          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLP--KLDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R      P++ +S    +   +    +G DD + KP    E+LAR   + RR  
Sbjct: 61  SLVRSLREQEIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRA 120

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  ++E      G + +          G    L  RE R+LEYLM + G+ V +T +  
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 181 HVWD-YHFDPQTNVIDVHVSRLRSKIDRGFEHPMIHTVRGAGYVI 224


>gi|157963921|ref|YP_001503955.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848921|gb|ABV89420.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 225

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +  +  F + G ++E          L +S + D+  ++  L       L
Sbjct: 3   ILMVEDDATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQ--LDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R  
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGE 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +      GP+ +    R   + G+   L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SQPAVTDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|170738031|ref|YP_001779291.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820219|gb|ACA94801.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 248

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D  +  +  +      G ++E   +             DV  ++  L       L + 
Sbjct: 30  IEDDEITANEIVTELEGRGFTVEWVANGRDGMARALGNEFDVITLDRMLPVV--DGLTIL 87

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
             +R+   + P++ +S    +   +    +G DD + KP    E+ AR+  + RR + + 
Sbjct: 88  TTMRSVGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSQAAP 147

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     GP+++    R     GE   L   E R+LEY+M N G+ + +T +F A++G
Sbjct: 148 ATFDTTLVVGPLKLDLISRKAFRDGEEIVLLPTEYRVLEYMMRNAGQTITRTMLFEAVWG 207

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N++E H+ +LR+K+        + + R  GY +
Sbjct: 208 -YHFDPGTNLIEVHMGRLRRKIDPSDAKQMIQTVRGAGYRL 247


>gi|26989432|ref|NP_744857.1| DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|24984298|gb|AAN68321.1|AE016466_6 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 220

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +L+                 D+  ++  L       L
Sbjct: 3   LLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPR--MDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL R +RA    +P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   + +    +  +  G    L  +E  +L  L+A  GK   + ++   +YG
Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +DE  E N +E +I  LRKKL N L    + + R +GY ++ 
Sbjct: 181 -WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVEV 218


>gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 222

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +           G  +                  D+  ++  L        
Sbjct: 5   ILLIEDNPDITRVVQYELEQAGYRVLTAPDGVTGLTSARENSPDLVILDLGLPDF--DGA 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   ++   ++  ++G DD + KP H  E++ARV     R + 
Sbjct: 63  EIARRLRKTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQL-RHQQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +    R     G    L  +E  +L +L    G+  ++ +I   ++   
Sbjct: 122 HGEVISIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219


>gi|300855893|ref|YP_003780877.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300436008|gb|ADK15775.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 228

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 87/220 (39%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    + L   +G ++    +      + +  + D++ I+  L        
Sbjct: 4   IFLVEDDKEIAKNLVLLLRSEGFTVTHAPTRSDALAMLAGNKFDLALIDISLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    VP+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEIKEIQDVPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +  E   + +       +       L   E R+L   + N    + + ++   ++   
Sbjct: 122 SPSAFEVCGLHIDMASGVVKKDDSEVFLSALEYRLLLVFINNPKSIITRGRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+  N      + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRL 221


>gi|254422490|ref|ZP_05036208.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189979|gb|EDX84943.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 871

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 85/217 (39%), Gaps = 5/217 (2%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D   +      L       ++          +      D+  ++  L       ++L +
Sbjct: 2   EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLP--KLDGMQLCQ 59

Query: 66  IIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123
            +R   +  P+I ++   +    +   D+G DD + KP    E+LAR+ A+ RR + + +
Sbjct: 60  QLRNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGIVS 119

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              + G +++               L  +E  +LE  + N  +  +   +   ++  F++
Sbjct: 120 PVLQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVW-PFED 178

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 V +HI  LR+KLR     D + +   LGY +
Sbjct: 179 TPTVASVRTHIKGLRQKLRQVGLSDVISTVYGLGYRL 215



 Score = 85.7 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 5/141 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + +      L    G  +E                 D+  ++  +        
Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQ--LSGF 628

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L +++R+     ++P++ +S +   +T  + F  G DD + KPI   E++ARV     R
Sbjct: 629 DLCQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLAR 688

Query: 119 LKVSNNRAETGPIRVFSDGRD 139
            +    R E   +    + R 
Sbjct: 689 SRDRRLRTEIDSLTGLYNRRK 709


>gi|169334592|ref|ZP_02861785.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259309|gb|EDS73275.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
          Length = 236

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 100/234 (42%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D       + G ++  F +   +E L+   RED+      ++      +
Sbjct: 5   ILIVEDEKGIRDAIKIYLNNQGYNV--FEAENGKEGLEVLNREDIHLAIVDIMMPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +R    +P+I +S        +   + G DD V KP    E++ARV +  RR   
Sbjct: 63  TMTMRLRETYDIPVIFLSAKSEDIDKITGLNIGADDYVTKPFASMELIARVNSQIRRYDQ 122

Query: 120 -----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                      + ++NR   G + +  D ++  V G    L  +E +IL  L+   G+  
Sbjct: 123 ILNLKHSSIKEEENSNRYVVGGLELDDDTKEVTVDGNKVKLTAKEYQILRLLIKTPGRVY 182

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  QI+  ++   ++A+    +  HI KLR+K+  N      +     +GY ++
Sbjct: 183 SSEQIYEQVWN--EKAINTETIMVHIRKLREKIEVNPKKPHYIKVVWGIGYKME 234


>gi|65317995|ref|ZP_00390954.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|228913258|ref|ZP_04076894.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228931999|ref|ZP_04094891.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944325|ref|ZP_04106698.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815227|gb|EEM61475.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827582|gb|EEM73324.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228846397|gb|EEM91413.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 229

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 9   LLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPE--MDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|322806184|emb|CBZ03752.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 229

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G S+    +    E ++   + D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFEDQGYSV--ITASNGREAIEYCDK-DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QVCQNIRDKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + ++   G + +  + R    + +   L  +E  I+E L  +  +  +K QI+  I
Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + N V  HI K+R K ++     + + +   +GY  + N
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEIN 227


>gi|238854466|ref|ZP_04644805.1| two-component system regulator [Lactobacillus jensenii 269-3]
 gi|260665486|ref|ZP_05866333.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282934536|ref|ZP_06339788.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|313471830|ref|ZP_07812322.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153]
 gi|238832893|gb|EEQ25191.1| two-component system regulator [Lactobacillus jensenii 269-3]
 gi|239530126|gb|EEQ69127.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153]
 gi|260560754|gb|EEX26731.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281301374|gb|EFA93666.1| response regulator ArlR [Lactobacillus jensenii 208-1]
          Length = 240

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+      L  + + D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLMLPD--LNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+ +
Sbjct: 62  EIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVNI 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          +   + + +  R      +   L +RE  +L  L+ N+   V++ 
Sbjct: 122 EKKVSSNTAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 182 QLLNKIWGP-ESNIETNVVEVYVRYLRNKIDAPDRPSYIKTVRGTGYMV 229


>gi|224541337|ref|ZP_03681876.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525774|gb|EEF94879.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM
           15897]
          Length = 234

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 100/231 (43%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++            +    +   +E L++    D+      ++      L
Sbjct: 5   LLLVEDELGIRETVKIFLKSQNYEV--IEAENGKEGLEALKHNDIHLAIVDIMMPVMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +R  S +P+I ++        +   + G DD + KP    E++ARV +  RR   
Sbjct: 63  TMTMKLREVSDIPVIFLTAKTEDIDKITGLNLGADDYITKPFEPMELIARVNSNLRRYEQ 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +  NN+   G + +  + ++  V G    L ++E +ILE LM+  GK  +  
Sbjct: 123 ILNLKGNIQKPNNQLIVGGLVLDQETKEVFVNGRSVRLTKKEFQILELLMSYPGKVYSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +I+ +I+   + A+    +  H+ +LR+K+  N    + + +   +GY I+
Sbjct: 183 EIYESIW--EETAINTETIMVHVRRLREKIEANPKHPEYLKAVWGVGYKIE 231


>gi|71734983|ref|YP_275297.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485460|ref|ZP_05639501.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|71555536|gb|AAZ34747.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323806|gb|EFW79890.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327945|gb|EFW83950.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881161|gb|EGH15310.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889640|gb|EGH22301.1| DNA-binding response regulator [Pseudomonas syringae pv. mori str.
           301020]
 gi|330989766|gb|EGH87869.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010708|gb|EGH90764.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 222

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++         +  ++   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLP--GMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R      P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+KL    G   V+++R  GY
Sbjct: 181 DGENE-RDSNVIEVHVNHLRRKL----GRAVVETRRGQGY 215


>gi|326567041|gb|EGE17164.1| two-component system response regulator [Moraxella catarrhalis
           12P80B1]
          Length = 240

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 93/231 (40%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +    + +    +  +   D+S I   L+      +
Sbjct: 5   ILLIEDDPDLAELISDYLSINYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPDMDGM 64

Query: 62  ELPRIIRAHSQ-----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           E+ + +R         VP++ ++        +   + G DD + KP   RE+LAR+ A+ 
Sbjct: 65  EVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVL 124

Query: 117 RRLKVSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR +  N           G + V+ D  +  +  +   L   + ++L Y   + GK + +
Sbjct: 125 RRHETPNQADTNSGSLTFGRLTVYPDSHEVTIDEKTVRLTTHQFQLLHYFATHAGKVLNR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q++ A+         +  ++ HIS+LR  + +       + + R +GY  
Sbjct: 185 EQLWQAMPNDDSSENIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|254496481|ref|ZP_05109357.1| transcriptional regulatory protein CpxR [Legionella drancourtii
           LLAP12]
 gi|254354298|gb|EET12957.1| transcriptional regulatory protein CpxR [Legionella drancourtii
           LLAP12]
          Length = 226

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D        +G         + E  ++ +  +   AI   ++       
Sbjct: 5   ILIIDDDTELTDLLTQYLEPEGF--HAVCVHDGENGVKKALNQPFDAIILDVMLPKLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR H + P++ ++        +   + G DD + KP + RE++AR+ AI RR + 
Sbjct: 63  EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    E   I V    R   + G    L   E  ILE L+ + G+  +K ++     
Sbjct: 123 IPAARPIIEQHNIVVDCSKRHVTLAGNYLELTNAEFNILEMLIKSPGQAFSKEELTEYAL 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
           G    A +   ++ HIS LR KL +    +P+  + R  GY  +
Sbjct: 183 GRKYTAYD-RSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYLFN 225


>gi|161523860|ref|YP_001578872.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341289|gb|ABX14375.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
          Length = 225

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     + E  L +   E    +   L       +
Sbjct: 8   ILLVEDDRMIAEGVRKALRSDGFAVDWVQ--DGESALTALGGESYDLLLLDLGLPKRDGI 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  DVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 126 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 186 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 221


>gi|332533632|ref|ZP_08409492.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036913|gb|EGI73373.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 224

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +  S++  +  E   +  +    D++ ++  L       +
Sbjct: 3   ILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLP--KIDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL    RA    +P++ ++     Q  ++  D+G DD + KP H  E++AR  A+ RR  
Sbjct: 61  ELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N     GPI++ +  +   V  +   L   E ++LEYLM N  K ++K+++   IY 
Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  + +LRKKL      +PV++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFVLRLRKKLDPDGVLNPVETLRGRGYRL 220


>gi|320333134|ref|YP_004169845.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754423|gb|ADV66180.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 222

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +           G  +                  D+  ++  L        
Sbjct: 5   ILLIEDNPDITRVVQYELEQSGYRVLSAPDGITGLTSARENNPDLVILDLGLPDF--DGA 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   ++   ++  ++G DD + KP H  E++ARV     R + 
Sbjct: 63  EIARRLRKTSAVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQL-RHQQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G + +    R     G    L  +E  +L +L    G+  ++ +I   ++   
Sbjct: 122 HGEVIQIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219


>gi|229179439|ref|ZP_04306792.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228603940|gb|EEK61408.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 229

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +   ++ +  E L++     +  I   ++      +
Sbjct: 7   ILIVDDDIEIRKIVSIYLKNEGYEI--IDASDAIEALETLRNTTIDLIILDIMLPKMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR   Q+P+I +S        +    SG +D + KP +  E++AR+ +  RR +V
Sbjct: 65  EACLKIREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      E G ++V    R   ++ E   L  +E  IL  L+ N+GK  +  +I+ 
Sbjct: 125 YQTEEVKQFIHEIGHLKVDEKTRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++        +N V  HI+K+R+K+         + +   +GY +
Sbjct: 185 MVW-EDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYRV 229


>gi|196041826|ref|ZP_03109115.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027320|gb|EDX65938.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       D + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYR 219


>gi|148273950|ref|YP_001223511.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831880|emb|CAN02850.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 257

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D        +G  +    +           + D   ++  L       L+
Sbjct: 34  LVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPD--LDGLQ 91

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA +  +P++ ++   SL   L    +G DD V KP    E++AR+  + RR  +
Sbjct: 92  VLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSTL 151

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +     G + +  D  +    G+   L   E  +L YLM N  + ++K QI   
Sbjct: 152 VVSDSVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILDR 211

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + +VVE +IS LR+K+ +      + + R  GY +
Sbjct: 212 VW-SYDFGGKSSVVEIYISYLRRKI-DAGRNPMIHTVRGSGYML 253


>gi|83719535|ref|YP_440832.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83653360|gb|ABC37423.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 272

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D  +  +  +      G +++   +         S   DV  ++  L   G   L + 
Sbjct: 54  IEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLP--GVDGLTIL 111

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
             +R+   + P++ +S    +   +    +G DD + KP    E+ AR+  + RR + S 
Sbjct: 112 TTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQASP 171

Query: 124 NRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ET    GP+ +    R     G    L   E R+LE++M + G+ + +  +F A++G
Sbjct: 172 APFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAVWG 231

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ H+ +LRKK+        + + R  GY +
Sbjct: 232 -YHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYIL 271


>gi|74197595|emb|CAJ29527.1| two-component system response regulator [uncultured Aeromonas sp.]
          Length = 229

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ DG +      G +++     +    L     E+ +A+   L       +
Sbjct: 3   ILLVEDDVMLGDGMVDALRSSGYTVDWLQ--QGLPALSVLKSEEFAALILDLNLPDIDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R   Q  P++ ++   +L   +   D+G DD + KP   +E+ AR+ A+ RR K
Sbjct: 61  SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   ++++ + +    +GE   L   E ++L+ L+   G+ ++K Q+  ++YG
Sbjct: 121 GQAQAVLEYEELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE  E N VE HI  LRKK       D + + R +GY I
Sbjct: 181 -WDEGAESNAVEVHIHHLRKK----FYSDLIRNIRGVGYII 216


>gi|16804621|ref|NP_466106.1| hypothetical protein lmo2583 [Listeria monocytogenes EGD-e]
 gi|224503624|ref|ZP_03671931.1| hypothetical protein LmonFR_14158 [Listeria monocytogenes FSL
           R2-561]
 gi|16412071|emb|CAD00661.1| lmo2583 [Listeria monocytogenes EGD-e]
          Length = 225

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+  +        
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPN--MDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA +  +P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR  
Sbjct: 62  ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLE 222


>gi|229073674|ref|ZP_04206788.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228709461|gb|EEL61521.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 228

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       DDG  +    + + +E L      +V  I   ++       
Sbjct: 5   ILIVEDEDILREIVKDYLLDDGYEV--LEATDGKEALSIFEEHEVHLIILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  SVCRRIRKTSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYS 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +      I +    R   +  E   L   E  IL YLM N+G  + + Q+ +
Sbjct: 123 SVISVTNEDTLMNSGIYIHFPSRTATLDKEAISLTHTEFEILTYLMQNQGIVITREQLIT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  + SHI  LR KL  K   + + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTINSHIRNLRHKLGKK--ANHIVTVVRAGYKFE 225


>gi|217976239|ref|YP_002360386.1| putative two component transcriptional regulator, winged helix
           family [Methylocella silvestris BL2]
 gi|217501615|gb|ACK49024.1| putative two component transcriptional regulator, winged helix
           family [Methylocella silvestris BL2]
          Length = 224

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 127/221 (57%), Positives = 163/221 (73%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V+ID+R +V  GY + FG++GVS  GF   EF EW+ + A  D+ A+EAFL+G     
Sbjct: 1   MLVIIDEREIVTAGYASRFGNEGVSSAGFCPEEFREWVATVAEGDLGAVEAFLLGDCRDR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              P++I+  S+ P+I ++D P L+ TLD F +GVDDVV KPIH REILARV AI RR  
Sbjct: 61  QAYPKMIKERSRAPVIAMNDAPCLEQTLDLFAAGVDDVVRKPIHVREILARVGAIKRRCD 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  +    G +RVF DGRDPE+ G V  LPRRERRILEYL+ NRG+RV+K QIF++IYG+
Sbjct: 121 IEVDSVALGDLRVFFDGRDPELNGRVLALPRRERRILEYLVNNRGRRVSKAQIFNSIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FDE VEENVVESHISKLRKKLR +LG+DP++S R+LGY +D
Sbjct: 181 FDENVEENVVESHISKLRKKLRRQLGYDPINSVRYLGYRLD 221


>gi|313499205|gb|ADR60571.1| DNA-binding response regulator [Pseudomonas putida BIRD-1]
          Length = 220

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +L+                 D+  ++  L       L
Sbjct: 3   LLLVEDDIALGEGICDGLRQEGYTLDWLRDGVGGLHALQHETFDLLILDLGLPR--MDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL R +RA    +P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   + +    +  +  G    L  +E  +L  L+A  GK   + ++   +YG
Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +DE  E N +E +I  LRKKL N L    + + R +GY ++ 
Sbjct: 181 -WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVEV 218


>gi|295094577|emb|CBK83668.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 239

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +      +  D+G +     S++    + +  + D+  ++  L        
Sbjct: 11  ILIVDDDADLSMLIQDMLEDNGYAFLYAASIDDAYEVLTDNKCDLILLDINLPD--GTGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
              + +R  SQVP+I  S   S    ++  D G DD + KP   +E+++R+ +I RR   
Sbjct: 69  SFCKELRHTSQVPIIFASARTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYG 128

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           V +N++E          I +    R          +  +E  +L Y+  NRG+ + K QI
Sbjct: 129 VDDNKSEMLTLNTDGNEIEINRHARTVNRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQI 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            SA++GL+   VE + V  H+  LR+KL  +      + +    GY +
Sbjct: 189 MSAVWGLY-SDVEPSTVAVHVRWLREKLETDPSHPQLIRTVWGTGYVL 235


>gi|257061481|ref|YP_003139369.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256591647|gb|ACV02534.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 635

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A               +++  N+ E    L      DV  ++  L       +
Sbjct: 3   ILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQ--LDRI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +R   +  P++ ++     +  +   ++G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V  +      + +     +   QG++  L   E  +LE  + +  +  ++  I   I+ 
Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           L     EE  + SHI  LR+KL+      + + +    GY +
Sbjct: 181 LDKVPGEE-TISSHIKALRQKLKAVGMTQNMIKTVYGFGYRL 221



 Score = 61.5 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 5/111 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD     +   A     G ++   ++ +    +  +   D+  ++  +       L
Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHF--SGL 567

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
            L + +R       VP++ +S +   ++       G D  + K I   E++
Sbjct: 568 NLCQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618


>gi|254382225|ref|ZP_04997586.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194341131|gb|EDX22097.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 227

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   +++G        G  +    + E    L +S R ++  ++  L   G   ++
Sbjct: 5   LLIEDDPSIREGVGLGLRRRGHEVSAAETGEDGLALMASFRPELVLLDLMLP--GINGVQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           + R IR  SQVP+I ++        +   ++G DD + KP     I ARV A+ RRL   
Sbjct: 63  VCRRIRESSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEVIEARVKAVLRRLSTP 122

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + +R E    G + +   G     +GE  PL   E ++L +L A+     ++ Q+   ++
Sbjct: 123 AGSRPEVEFHGELAIDRAGLTVAKRGERVPLAPSEIKLLLHLSASPEHVFSRQQLLEYVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                  +  +V++ + +LR K+ N  G    + + R  GY  
Sbjct: 183 D-HSYHADARLVDACVRRLRTKIENPAGSPRYIQTVRGFGYRF 224


>gi|148240584|ref|YP_001225971.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849123|emb|CAK24674.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 248

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++                  D+  ++  +        
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALECFQECEPDLVVLDVMMP--KLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEK 128

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +          +   +++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EHAAGIPNTGLIKVSDLKIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|20808060|ref|NP_623231.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|254478788|ref|ZP_05092156.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|20516641|gb|AAM24835.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035300|gb|EEB76006.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 240

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G  +    + +         + D+  ++  L       LE
Sbjct: 6   LVIEDEIHILELLRYNLEAAGYKVMASENGKEGLEKALEEKPDLLILDLMLPD--MDGLE 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + ++++ +     +P+I ++        +   + G DD + KP   RE+LAR+ A+ RR 
Sbjct: 64  ICKVLKKNEDTKNIPIIMLTARSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRT 123

Query: 120 KV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          + G I + +       +G+   L  +E  +L+ L  N+GK + +  +  
Sbjct: 124 QQVEEEKEEIIKFGDIVIDTGKHVVYKKGKALDLTLKEFELLKLLSQNKGKVLTRDYLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++G ++ A E   V+ HI  LRKK+ +       +++ R +GY +
Sbjct: 184 KVWG-YEYAGETRTVDVHIRHLRKKIEDDDKAPVYIETVRGIGYKL 228


>gi|17227568|ref|NP_484116.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17135050|dbj|BAB77596.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 224

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +    +  + G  ++     E  EWL S    D+  ++  L       L
Sbjct: 3   ILLVEDDYEQLEPLQGILSEAGYIVDTAEDGEIAEWLISQKDYDLLILDWMLPT--ISGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L R  R +    P++ ++   +    +   D+G DD + KP    E+LARV A+ RR+ 
Sbjct: 61  SLCRQYRCSGKTAPILMLTARDTTPDKVMGLDAGADDYLVKPADLVELLARVRALARRVP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      +++       E +     L  RE R+LEYLM +  + + ++QI  A++ 
Sbjct: 121 NWQGDSLRVADLQLHLAYLTVEREQIKVELSPREARLLEYLMRHPNQVLTRSQIEEALW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +    E N +   + KLR +L+     + + +   +GY ++
Sbjct: 180 EWGMEPESNALTVLVRKLRHRLQQVDAAEWIRTVYGMGYRLN 221


>gi|316934891|ref|YP_004109873.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602605|gb|ADU45140.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 241

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D  +  F + G   +     E    L  S   DV  ++  L  +    L
Sbjct: 18  LLIIEDDRESADYLVKAFREVGHIADLAGDGEEGLALAESGDYDVLVVDRMLPKR--DGL 75

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R   ++ P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 76  SVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +          GE   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 136 GPAEETSYRVGDLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 196 D-YHFDPQTNVIDVHISRLRGKIDKGFDRPLLHTIRGAGYMI 236


>gi|222110191|ref|YP_002552455.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221729635|gb|ACM32455.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 242

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + D  +      G + E         + L +    D++ ++  L   G   
Sbjct: 7   ILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLP--GIDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE+ R  R H+  P++ I+        L   + G DD + KP   RE++ARV A+ RR  
Sbjct: 65  LEVLRQARRHTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLRRRA 124

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +      G + +        + G +  L  RE  +L  L+A+    +++ Q+  
Sbjct: 125 PLAQAAAQAELAYGALVLDEAQLQATLHGTLVALTPREWHLLRTLLAHPRSVLSRAQLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
             Y    +   E  V+SHI  LR+KLR  +  G D + S   +G++ D
Sbjct: 185 HAYPDSPQEPNERAVDSHIKNLRRKLRSADPAGHDWIRSVYGVGFAFD 232


>gi|108763454|ref|YP_632339.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108467334|gb|ABF92519.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 232

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++         G  ++                  +  ++  +       L 
Sbjct: 8   LVVDDDPHLREIVRFALEQGGFRVDEAADGRAALTQVDRGLPALIVLDIMMPE--LDGLA 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   ++P++ +S        +   + G DD + KP   RE++ARV A+ RR + +
Sbjct: 66  VCREVRRKHELPIVFLSSRDDEVDRILGLELGGDDYLTKPFSPRELVARVKAVLRRARPA 125

Query: 123 NNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          GP+R+ ++      Q     L   E ++L  L+   GK   + ++
Sbjct: 126 PAPEVEAPAARMQSRGPLRMDAERWRAWWQDTEVVLTVTEFQLLATLLRVPGKVFTRDEL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + +Y   D  V +  ++SH+ ++R+K  +  G D +++   LGY +
Sbjct: 186 MNRVYD--DVVVSDRTIDSHVRRVRQKFASAGG-DVIETVHGLGYRL 229


>gi|150018389|ref|YP_001310643.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904854|gb|ABR35687.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 226

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  +       L
Sbjct: 4   ILIVEDDEKLARFVELELLHEGYEILKADNGRLGLEIAEKGEVDLVLLDIMIPQ--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    +R   
Sbjct: 62  EVLRRIRKTSDLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKRRTV 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   +    G + +           +   L  RE  +L+ L+ N+   + +  +   +
Sbjct: 122 IEKRDTDIISCGLLSLDKMRHKVTYDNKEIELTNREFTLLKILLENKNIVLTRDILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYIGETNVIDVYIRFLRTKIDDAFKTKIITTVRGVGYVI 223


>gi|293610947|ref|ZP_06693246.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826599|gb|EFF84965.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 224

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +  I L       +E  N+        +  + D+  ++  L       +
Sbjct: 4   ILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  V
Sbjct: 62  QVLKQIRQRAATPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      ++G + +  +      +G+   L  RE  IL  LM++  K  +K  +  
Sbjct: 122 EAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 182 KLYD-FDSDVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 221


>gi|219855228|ref|YP_002472350.1| hypothetical protein CKR_1885 [Clostridium kluyveri NBRC 12016]
 gi|219568952|dbj|BAH06936.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 231

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 99/225 (44%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++   + +    L+ + +     I   ++      +
Sbjct: 9   ILIVEDEIKIARFVQLELEHEGYMVD--QTGDGRVGLEKALKGGYDLIILDVMLPSLNGM 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S++P+I ++    +   +   D G +D + KP    E+LAR+  +++    
Sbjct: 67  EVLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 126

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                NN    G +++         +     L ++E  +L+YLM N+   +++  I   +
Sbjct: 127 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   + N+V+ +I  LR K+ +K     + + R LGY   +
Sbjct: 187 WG-YDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQFRY 230


>gi|107026097|ref|YP_623608.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116692719|ref|YP_838252.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105895471|gb|ABF78635.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116650719|gb|ABK11359.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
          Length = 248

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D  +  +  +      G ++E   +             DV  ++  L       L + 
Sbjct: 30  IEDDEITANEIVTELEGRGFTVEWVANGRDGMARALGNEFDVITLDRMLPVV--DGLAIL 87

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
             +R+   + P++ +S    +   +    +G DD + KP    E+ AR+  + RR + + 
Sbjct: 88  TTMRSVGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSQAAP 147

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     GP+++    R     GE   L   E R+LEY+M N G+ + +T +F A++G
Sbjct: 148 ATFDTTLVVGPLKLDLISRKAFRDGEEIVLLPTEYRVLEYMMRNAGQTITRTMLFEAVWG 207

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N++E H+ +LR+K+        + + R  GY +
Sbjct: 208 -YHFDPGTNLIEVHMGRLRRKIDPSDAKQMIQTVRGAGYRL 247


>gi|254411201|ref|ZP_05024978.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181702|gb|EDX76689.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 249

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILLIDDDPAISELVSINLEMAGYEVHQAPDGIKGQALALQLQPDLIMLDLMLPRV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     + +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDERTTDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP+ +  +  +     +   L   E  +L  L+   G+ V+ ++
Sbjct: 122 TDRIPQAAKHTEILNYGPLTLIPERFETIWFNQTVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 182 ILKEVWG-YDPDDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230


>gi|114762503|ref|ZP_01441947.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Pelagibaca bermudensis HTCC2601]
 gi|114544758|gb|EAU47763.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Roseovarius sp. HTCC2601]
          Length = 219

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          DG S++    L+      ++   D+  ++  L     + +
Sbjct: 3   ILLIEDDTTLGAAVRDQIAADGQSVDWVTRLDAARDAMAATSYDLILLDLMLPD--GRGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + +R    V P+I ++    +   +D  ++G DD + KP    E+ AR+ ++ RR  
Sbjct: 61  GFLKGLRTRGDVTPVIILTALDQVSDRIDGLNAGADDYLVKPFDLSELSARIGSVARRYS 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N     GP+ +    R     G   PL  RE  + E  +A  G+ ++K Q+   +Y 
Sbjct: 121 GNPNPILTHGPLDIDLAARSVHRDGRHVPLTAREWALFEAFLARPGQLLSKAQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E H+S+LRKKL    G   ++++R +GY +
Sbjct: 180 AFDAEVESNTIEVHVSRLRKKL----GSATIETERGMGYRL 216


>gi|330813170|ref|YP_004357409.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486265|gb|AEA80670.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 228

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
             +++D   +          +   +  F S   EE L+   +   D+  ++  L      
Sbjct: 5   IFIVEDEPSIATLVKYNLEKENYKV--FISNNGEEGLKEIKKIEPDLILLDWMLPD--LS 60

Query: 60  VLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
            +E+ R ++   +   +P+I ++     +  +   ++G DD + KP  H E++AR+ A+ 
Sbjct: 61  GIEICRSLKKDKKFKFIPIIMLTAKGQEEDKVLGLNTGADDYLVKPFSHSELVARINALL 120

Query: 117 RRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR+K     +      ++V    +      +   L   E R++ + + N  +  ++ Q+ 
Sbjct: 121 RRVKPQAIEDSVTFEDLKVDRLQKRVSRGSQQIILGPTEYRLINFFITNPRRVFSREQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ L    VE   V+ HI +LRK +      D + + R  GYS+D
Sbjct: 181 ENVW-LNSINVELRTVDVHIRRLRKAINLPGKKDLIRTVRSTGYSLD 226


>gi|317123920|ref|YP_004098032.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588008|gb|ADU47305.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 249

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G S+    +      +  +   DV  ++  L   G   +E
Sbjct: 16  LVVDDERALAQMVSTYLARAGYSVSEAYTGPDALSMARALDPDVIVLDLGLP--GLDGVE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++        +     G DD + KP   RE++ARV A+ RR +  
Sbjct: 74  VCRQIRTFSDCYVLMLTARGDEMDRIIGLSVGADDYITKPFSARELVARVQAVLRRPRQR 133

Query: 123 NNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              +              G + +   GR   V G    L R E  IL+ L A      ++
Sbjct: 134 GAGSSRDQAHREEPARLFGDLTIDPAGRSVSVAGSAVLLTRTEFDILDVLSARPKYAFSR 193

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            Q+   ++ +     +E++V+ H+  +R+KL  +      +D+ R +GY +
Sbjct: 194 RQLIDEVWDIA-WVGDEHIVDVHVGHIRRKLGDDPTTPRYIDTVRGVGYRM 243


>gi|296449998|ref|ZP_06891762.1| response regulator [Clostridium difficile NAP08]
 gi|296878379|ref|ZP_06902387.1| response regulator [Clostridium difficile NAP07]
 gi|296261268|gb|EFH08099.1| response regulator [Clostridium difficile NAP08]
 gi|296430677|gb|EFH16516.1| response regulator [Clostridium difficile NAP07]
          Length = 266

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G ++  F      E L+    +++      ++      +
Sbjct: 32  ILVVEDEKEIADAIEIYLLNQGYNV--FKGYNGLEGLKVIENQEIHLAIIDIMMPKMDGI 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R +   P+I +S        +   + G DD V KP    E+LARV +  RR   
Sbjct: 90  TLTMKLRENHNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTK 149

Query: 122 SNNRAE--------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             N  E               G + +  + ++  V G+       E +IL  LM N G+ 
Sbjct: 150 YLNMVENKEQKVDDDDGVFAIGGLELNENTKEVSVDGKHIKATPIEFKILSLLMRNAGRV 209

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +  +I+  ++   D AV  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 210 FSADEIYERVWN--DNAVNTDTVMVHVRNIREKIEVDPKNPKYLKVVWGVGYKIE 262


>gi|229089633|ref|ZP_04220895.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693663|gb|EEL47364.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 229

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +   D   ++   + E   +L      D   ++  +        
Sbjct: 9   LLVVEDNASLLESIVQIL-HDEFEVDTALNGEEGLFLALQNIYDAILLDVMMPE--MDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|218893871|ref|YP_002442740.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa LESB58]
 gi|218774099|emb|CAW29915.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa LESB58]
          Length = 221

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  L+ DG  A    +G ++E        E    +   D+  ++  L  +    L
Sbjct: 3   ILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRR--SGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R   +  P++ ++    +   +   DSG DD + KP +  E+ ARV A+ RR  
Sbjct: 61  DILRNLRHQGRLTPVLLLTARDKVADRVAGLDSGADDYLTKPFYLDELQARVRALTRRTT 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G +R+        + G+   L  RE  +L  L+ N GK +++ Q+  ++YG
Sbjct: 121 GRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   VE N +E H+  LR+KL    G   + + R +GY ID
Sbjct: 181 -WSGDVESNAIEVHVHHLRRKL----GNQLIRTVRGIGYGID 217


>gi|5353563|gb|AAD42180.1|AF130997_1 response regulator [Enterococcus faecium]
 gi|154267919|gb|ABS72054.1| response regulator [Ruminococcus gauvreauii]
          Length = 232

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F + +       S   D++ ++  L        
Sbjct: 5   ILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDV--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
           ++ + IR     P+I ++        +       DD + KP +  E++ARV A  R   R
Sbjct: 63  QICQKIREKFYFPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 119 LKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            K  +          +   + +        + G+   L   E  IL YL   +G  V+  
Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++F A++G        N V +HI +LR+K++        + +   +GY+I+
Sbjct: 182 ELFEAVWGER-FFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIE 231


>gi|91203082|emb|CAJ72721.1| strongly similar to response regulator protein phoB [Candidatus
           Kuenenia stuttgartiensis]
          Length = 230

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +  +     DG         E    L  S R  +  ++  L   G   L
Sbjct: 5   ILIVDDERDIVNLIMYHLEKDGYKTITALDGEAALELSKSERPALIILDIMLP--GMNGL 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + +++    S   +I ++              G DD V KP   +E++ARV ++ RR
Sbjct: 63  EVCKRLKSDEALSDAAIIMLTARGEEDDITRGLKLGADDYVTKPFSPKELVARVHSVLRR 122

Query: 119 LKVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            K ++      E G +++  D  + ++  +V PL   E ++L  L    G+   + Q+  
Sbjct: 123 TKNASFKKELLEIGDLKINMDNYEVKIGHDVIPLTLTEFKLLCQLAGKPGRVFTRDQLID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS-IDW 222
           AI G+    ++   ++ HI+ LRKKL++    + + + R +GY  ++W
Sbjct: 183 AIAGVETIIID-RTIDVHIASLRKKLKSF--KNHIITIRGIGYKFMEW 227


>gi|119717163|ref|YP_924128.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119537824|gb|ABL82441.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 232

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 89/225 (39%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            +++DD   ++         +G  +              +   E V  +   ++  G   
Sbjct: 4   ILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPGMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  +   +I ++        L     G DD V KP   RE+ ARV ++ RR +
Sbjct: 64  LEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLRRRR 123

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + R     + V   GR+  V G    L   E  +L  L+   G+  ++ Q+   
Sbjct: 124 DGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQLLEQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++G  D   +E VV+ HI  LR +L  +      + + R +GY  
Sbjct: 184 VWGN-DFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKF 227


>gi|302188250|ref|ZP_07264923.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|330944499|gb|EGH46487.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330953676|gb|EGH53936.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 220

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G +L+     +    L +   E    +   L       L
Sbjct: 3   LLLVEDDRAIGQGIRVALNTEGYTLDWLE--DGLSALHALRSEPFDLLLLDLGLPRMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA +  +P++ ++        +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +    QG   P+   E ++L  LM   GK V + ++ + +YG
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E  I  LRKKL      + + + R +GY ++
Sbjct: 181 WQDK-VESNTLEVLIHNLRKKL----STELIRTVRGVGYLLE 217


>gi|283834149|ref|ZP_06353890.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC
           29220]
 gi|291070299|gb|EFE08408.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC
           29220]
          Length = 227

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  ++  D+  ++  L        
Sbjct: 3   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIVESQFQAADLMVDLVSRKVTRSGARITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|113954022|ref|YP_731785.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113881373|gb|ABI46331.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 248

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 100/226 (44%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++    + +  E L+S  + +   +   ++       
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNV--VTACDGTEALESFEQCNPDLVVLDVMMPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++ 
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   +R+ ++ R      E   L   E  +LE L+   G+  ++ +I 
Sbjct: 129 EQVAGIPNSGVIQVADLRIDTNKRQVFRADERIRLTGMEFSLLELLVGRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 189 KDVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|82546448|ref|YP_410395.1| DNA-binding transcriptional regulator BasR [Shigella boydii Sb227]
 gi|81247859|gb|ABB68567.1| transcriptional regulatory protein [Shigella boydii Sb227]
 gi|320183598|gb|EFW58442.1| Transcriptional regulatory protein basR/pmrA [Shigella flexneri CDC
           796-83]
 gi|332087317|gb|EGI92446.1| transcriptional regulatory protein basR/pmrA [Shigella boydii
           3594-74]
          Length = 222

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYMLVAN 219


>gi|116492482|ref|YP_804217.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102632|gb|ABJ67775.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 228

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +E  ++      L+++  ED  AI   L+      +
Sbjct: 4   ILIIEDEKSLARFVQLELQHEGYEVEVQSNGRT--GLEAALSEDFDAILLDLMLPEINGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  EVCRRIRREKITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVDL 121

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       E   I +  + R      EV  L +RE  +L  LM N     ++  + 
Sbjct: 122 ETQDSTFHQTTVEFQDIVIEKENRVVRRNNEVINLTKREYELLLLLMENINVVQSRETLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G+ D+ VE NVV+ +I  LR K+  K     + + R  GY +
Sbjct: 182 NKVWGV-DDGVETNVVDVYIRYLRNKIDVKGRPSYIQTVRGTGYVM 226


>gi|229132845|ref|ZP_04261690.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228650672|gb|EEL06662.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 232

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    + S    DV+ ++  L   G    
Sbjct: 7   ILVLEDEIPIRSFIVLNLKHAGFYVLEASTGEEALQILSEHIVDVALLDVMLP--GIDGF 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 65  QVCKAIREENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNTITSGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYV 226


>gi|194015744|ref|ZP_03054360.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
 gi|194013148|gb|EDW22714.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
          Length = 231

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  ++   + E        +  D+  ++  +   G   +
Sbjct: 5   ILIVEDDQDIGDLLQESLTRAGYEVQRAMNGEQALKFVDDSL-DLVILDVMMP--GISGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +RA S VP++ ++   S     +   +G DD + KP    E+ ARV A  RR  V
Sbjct: 62  ETCQQMRASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYTV 121

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E        G +RV  +  +     +   L   E R+L+ LM+ R K  +   I+
Sbjct: 122 YQEKKEQEETFLVGGKLRVSEEFNEVWKGNQQLKLSDLEYRMLKLLMSRRNKIFSAQNIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +++G        N V  HI KLR K+ +       + ++   GY  
Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRAKIEDDPARPVYIKTEWGRGYRF 228


>gi|37526668|ref|NP_930012.1| DNA-binding transcriptional regulator BaeR [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786100|emb|CAE15152.1| two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 234

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +          +     +           D+  ++  L G     + 
Sbjct: 11  LIVEDEPKLGQLLVDYLQAADYETQWLLRGDEAVSHVQQHNPDIILLDLMLPGC--DGIT 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++        L   + G DD + KP   REI+ARV  I RR    
Sbjct: 69  ICREIRRFSDVPIIMVTAKTEEIDRLLGLEIGADDYICKPYSPREIVARVKTILRRCYRP 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  +   + +         + ++  L   E R+L+ + +  G+  ++ ++ + +Y    
Sbjct: 129 QDIVKQSDLHIDEACFQARYRDKILDLTPVEFRLLKTMASRPGQVFSRDKLLNNLYDDH- 187

Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             V +  ++SHI  LR+KL         + S   LGY  + +
Sbjct: 188 RIVTDRTIDSHIKNLRRKLEQLDNSKTFIRSIYGLGYRWEAD 229


>gi|315648396|ref|ZP_07901495.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315276090|gb|EFU39436.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 14/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++E     +       S   DV  ++  +        +
Sbjct: 5   LVVDDEVSISSAVAYALRREGYTVETAGDGQEALERVESFHPDVMVLDVMMPR--LSGYD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +    +  ++ ++    +   +   + G DD + KP   REI+ARV A+ RR +  
Sbjct: 63  VCRKLENRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRTV 122

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     N      + +    R    +G++  L  +E  ++  L  N  +  ++  +
Sbjct: 123 ENVQQPASPQNEIRISGLVINLLNRTVHAEGKLLELTPKEFDLIALLARNPERVYSREAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              ++ + D A     V+ H+ +LRKKL +    D + +   +GY 
Sbjct: 183 LEQVWDM-DFAGGTRTVDIHVQRLRKKLGDL--HDVIQTVYGIGYK 225


>gi|229014012|ref|ZP_04171136.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229135662|ref|ZP_04264439.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228647760|gb|EEL03818.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228747268|gb|EEL97147.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 229

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    L      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIMLPE--LDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQA 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228


>gi|229173900|ref|ZP_04301438.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228609538|gb|EEK66822.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 225

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFV--DGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|158334669|ref|YP_001515841.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158304910|gb|ABW26527.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 225

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +   +     D G  ++  +  E   +  + +   +  ++  L       L
Sbjct: 3   LLLVEDDYPLAAVFAEALEDSGYIVDVVHDGEAGWYQATESEYGIILLDCMLP--KLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RAH   +P++ ++   +    +   D+G DD + KP+   E+LAR+ A+ RR  
Sbjct: 61  GLCQRLRAHGYTIPILMMTARDASTDKVLGLDAGADDYLVKPVDLPELLARIRAVLRRGT 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +     G + +     +         L   E  +LE  + +  + +++  I S ++ 
Sbjct: 121 ATPSPLLYWGDLCLHPLNHEVTYASHPVKLTPTEFSLLELFLRSGLRVLSRKIIISHLWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           L D   EE  V++HI  LR+KL         +++ R +GY +
Sbjct: 181 LEDPPGEE-TVKAHIKGLRQKLTEAGAPKTFIETIRGVGYRM 221


>gi|224500461|ref|ZP_03668810.1| hypothetical protein LmonF1_12649 [Listeria monocytogenes Finland
           1988]
 gi|254830991|ref|ZP_05235646.1| hypothetical protein Lmon1_06513 [Listeria monocytogenes 10403S]
 gi|284803023|ref|YP_003414888.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578]
 gi|284996164|ref|YP_003417932.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923]
 gi|284058585|gb|ADB69526.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578]
 gi|284061631|gb|ADB72570.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923]
          Length = 225

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+  +        
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPN--MDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA +  +P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR  
Sbjct: 62  ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLE 222


>gi|138894005|ref|YP_001124458.1| transcriptional regulatory component of sensory transduction system
           [Geobacillus thermodenitrificans NG80-2]
 gi|196250325|ref|ZP_03149018.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265518|gb|ABO65713.1| Transcriptional regulatory component of sensory transduction system
           [Geobacillus thermodenitrificans NG80-2]
 gi|196210214|gb|EDY04980.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 234

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 100/226 (44%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G      D+G  +   ++LE  + L +S   D+  ++  L        
Sbjct: 4   LLLVEDDESLALGIEFALQDEGYEVCRASTLEEGKALFASQSFDLIILDINLPD--GSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L + IRA S VP++ ++        +   + G DD + KP      L+R+ A+ RR   
Sbjct: 62  DLCKHIRATSDVPILFLTALDEEVNIILGLELGGDDYITKPFGVGVFLSRIKALLRRSAG 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +    ++G I V       E  G+   L  +E ++L  LM      +++ +I   + 
Sbjct: 122 HRATGMILKSGTITVDPLAATVEKNGQKISLSAQEYKLLLTLMDRPCTVMSRDEILRELA 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
              +   +EN +  +I +LR+K+ +       + ++R LGY   WN
Sbjct: 182 EGTEAFFDENTLAVYIRRLREKIEDDPKEPQYIVTQRGLGYK--WN 225


>gi|294635401|ref|ZP_06713893.1| DNA-binding response regulator BaeS [Edwardsiella tarda ATCC 23685]
 gi|291091224|gb|EFE23785.1| DNA-binding response regulator BaeS [Edwardsiella tarda ATCC 23685]
          Length = 243

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I             +  +       +   D+  ++  L   G   L
Sbjct: 18  ILIVEDEPKLGQLLIDYLLAASYRPHWLSRGDEVLPHLQNHLYDLILLDLMLP--GVDGL 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR  +
Sbjct: 76  TLCREIRRSSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCGL 135

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                   P+ +         + +   L + E R+L+ L    G  +++ Q+ + +Y  +
Sbjct: 136 QEGGEVRTPLLIDERHFQARYRQQTLDLTQAEFRLLKTLATQPGCVLSREQLLNHLYDDY 195

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  V+SHI  LR+KL   + G   + S   +GY  +
Sbjct: 196 -RVVTDRTVDSHIKNLRRKLEAIEQGEPLIRSVYGVGYRWE 235


>gi|241895394|ref|ZP_04782690.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241871368|gb|EER75119.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 233

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 99/226 (43%), Gaps = 5/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D        + + +      +    L     ++++ I    +       
Sbjct: 5   ILLVEDEEGLADSLKTELELEDMVVIWAKDGQEALDLFHEHEQELNLIILDWMLPKLDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR HSQ+P+I ++    +   +     G DD + KP    E+LAR+    R  + 
Sbjct: 65  SVLRRIRKHSQMPVIMLTARDYIGDKVAGLTGGADDYMTKPFEVEELLARIEVSLRHSQK 124

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++++A+    G + V +  +      ++ PL +RE  +L  L+ N  +  ++  +   ++
Sbjct: 125 TDHQAKIYTVGDLTVDTTTKRVSRHNKIIPLTQREYELLVVLVMNEDEACSRDGLLDEVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           G+ D   + N+++ ++  LR K+  +      + + R +GY +  N
Sbjct: 185 GV-DFEGQPNILDVYVRNLRSKIDADPSNQKLIHTVRGVGYMLSQN 229


>gi|187777045|ref|ZP_02993518.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
           15579]
 gi|187773973|gb|EDU37775.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 90/224 (40%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +   +    + E         + +V  ++  L   G   L
Sbjct: 4   ILIVEDEPSIRGFVKVNLKMNNFDVIEAETGEEGVEKAREHKPEVVILDIMLP--GMDGL 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +I+R   + + +I ++        +   + G DD + KP +  E+  R+ AI RR+ 
Sbjct: 62  EVCKILRQEFTNMGIIMLTAKSQDTDKVLGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +N    GP ++    +      E   +   E  +++  + N GK   + ++   
Sbjct: 122 AVKENDDNIITGGPFKIDLYSKKIYKDEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           ++G +D   +  +V+ +I +LR K+         +++    GY 
Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFINTVWGTGYR 224


>gi|170769721|ref|ZP_02904174.1| DNA-binding response regulator BaeR [Escherichia albertii TW07627]
 gi|170121335|gb|EDS90266.1| DNA-binding response regulator BaeR [Escherichia albertii TW07627]
          Length = 240

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYIRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP+I ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPIIMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +  +    + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDVEQSFIRAVYGVGYRWEAD 235


>gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL +    + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGDSG--EYIKTIYGVGYKLDC 223


>gi|21222423|ref|NP_628202.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|13122184|emb|CAC32360.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 271

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +                R D   ++  L       L 
Sbjct: 48  LVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPD--MDGLS 105

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 106 VLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 165

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R++     G + +  D  +    G+   L   E  +L +LM N  + ++K QI   +
Sbjct: 166 ADRRSDSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRV 225

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 226 W-SYDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 266


>gi|319424670|gb|ADV52744.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 239

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +  F + G ++E  N       L +S + D+  ++  L       L
Sbjct: 17  ILLVEDDATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQ--LDGL 74

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA     P++ +S    +   +    +G DD + KP    E+L R   + +R +
Sbjct: 75  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 134

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +     G +++    R+  + G+   L  +E ++L+YLM +  + +++T +F A++
Sbjct: 135 STPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 194

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 195 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 235


>gi|297563588|ref|YP_003682562.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848036|gb|ADH70056.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 234

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D     D        +G  +   +            R D+  ++  +       L+
Sbjct: 6   LVAEDDVNQADLIRRYLEHEGHFVRVVHDGRAAVAAHHRDRPDLVVLDVMMPV--MSGLD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
             R +RA S V ++ ++   + +  L   D G DD V KP   RE++ARV  + RR +  
Sbjct: 64  ACRALRAESDVAVLMLTARSTEEDLLTGLDLGADDYVTKPYSPRELMARVRTLLRRSRRD 123

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++     GP+ V        V G        E ++L  L A  G+ + + Q+   I+
Sbjct: 124 PDDADRVLRAGPVAVDPSRHAVRVDGVPVTCTPAEFQLLAALAAQPGRVLTRAQLLEHIH 183

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G+    + E  ++ H+  LR+KL  +      + +   +GY +
Sbjct: 184 GMS-RFITERTIDVHVKNLRRKLEPDPRRPVRLVTVYGVGYKL 225


>gi|239620735|ref|ZP_04663766.1| DNA-binding response regulator [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132346|ref|YP_003999685.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481680|ref|ZP_07940714.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689647|ref|YP_004209381.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691608|ref|YP_004221178.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239516311|gb|EEQ56178.1| DNA-binding response regulator [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773960|gb|ADQ03448.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916912|gb|EFV38300.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456464|dbj|BAJ67086.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460983|dbj|BAJ71603.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 240

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 21/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
             ++DD   + +    +  ++G  ++   + L   E      + D+  ++  L   G   
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIV-KPDLILLDVMLP--GLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R IRA S VP+I ++        +   ++G DD V KP    E+LAR+ A +R  K
Sbjct: 61  TGVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAK 120

Query: 121 VSN---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
            +                N  E G I +          G+   L   E  +L  L A  G
Sbjct: 121 PAAEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAG 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           + ++++ +   ++G ++ + +  +V  H+ +LR K+ +      +  + R +GY  
Sbjct: 181 EAISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235


>gi|153813864|ref|ZP_01966532.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756]
 gi|317502000|ref|ZP_07960184.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088182|ref|ZP_08337102.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848260|gb|EDK25178.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756]
 gi|316896680|gb|EFV18767.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408838|gb|EGG88301.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 232

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 93/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +  F + +  E L+   +E++      ++      + 
Sbjct: 7   LIVEDDKEIREGVQIYLQSQGYVV--FQAADGIEGLEILEKEEIHLAIIDIMMPRMDGIR 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           +   +R     P+I +S        +   + G DD V KP    E++ARV +  RR +  
Sbjct: 65  MTMKLREKYDFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYRKF 124

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N    G + +  D  +  + G    L   E +IL  L  N G+  +  +I+ 
Sbjct: 125 LEKLAPQENTHVIGGLEINEDMVEVSMDGNPVKLTPIEYKILLLLAKNPGRVFSAEEIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   ++A+  + +  H+  +R+K+  +      +     +GY I+
Sbjct: 185 RVWQ--EKAINTDTIMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 229


>gi|163940906|ref|YP_001645790.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863103|gb|ABY44162.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFV--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 122 LSADIITLHGTIIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|150019307|ref|YP_001311561.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905772|gb|ABR36605.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 229

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +  + + +  E ++ + + + + +   ++  G    
Sbjct: 11  ILIVDDEKSIVDFIKMGLEGEGYLV--YEAYDGNEAIELARKINPNIVILDIMLPGMDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+  II+   +  +I ++    +   +   D G DD + KP   +E+LAR+ A  R    
Sbjct: 69  EVCSIIKKSIKTSVIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNSFP 128

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G  +V     +   + +V  LP  +  +L +L+ N G  ++K+ I   ++G 
Sbjct: 129 ELSDITNIGNFKVDDKAHEITYREKVLDLPPTQYNLLSFLLMNNGIALSKSLILEKVWG- 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E+N+VE +I  LR K+ +K   + + + R +GY +
Sbjct: 188 YDFNGEDNIVEVYIRYLRDKIGDK-DHNIIKTVRGVGYKM 226


>gi|256618610|ref|ZP_05475456.1| two-component system response regulator [Enterococcus faecalis ATCC
           4200]
 gi|256598137|gb|EEU17313.1| two-component system response regulator [Enterococcus faecalis ATCC
           4200]
 gi|315171705|gb|EFU15722.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
          Length = 227

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A    +  S+    +         S   D+  ++  L       L
Sbjct: 3   ILIVDDEVKILEVIDAYLVANKFSVYKATNGSMALSKFESINPDLVVLDLMLPDT--DGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S +P+I ++     +  L     G DD + KP   +E++AR+  + RR + 
Sbjct: 61  TVCRKIRESSNIPIIMLTAKSDEEDILTGLQLGADDYMVKPFSPKELVARIQTVLRRSET 120

Query: 122 --SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + N+     G + ++ D R   +      L   E  IL  L +   K  ++  +   I
Sbjct: 121 LLNPNKLSINKGELLIYPDSRQVYLHQIELNLTTTEFDILYTLASTPNKVFSRGDLIEKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G+ +    +  ++SHI  LR K+  +    + + +    GY  
Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIESDPKTPNYILTVHGTGYRF 223


>gi|229815480|ref|ZP_04445812.1| hypothetical protein COLINT_02528 [Collinsella intestinalis DSM
           13280]
 gi|229809013|gb|EEP44783.1| hypothetical protein COLINT_02528 [Collinsella intestinalis DSM
           13280]
          Length = 229

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFN----SLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +L++D  L+ D    L    G S++  +    ++E      S+    +  ++  L    
Sbjct: 5   ILLVEDDPLIVDALTELLTSSGYSVDTADTQTRAIELATGAGSAGTYQLVLLDVTLRE-- 62

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                +   ++  S   P+I ++       T+     G DD V KP   RE+LAR+AA  
Sbjct: 63  GNGFAVCAAVKETSPSTPVIFLTASDDEFNTVTGLTMGADDYVAKPFRPRELLARIAATI 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR + S      G IR+ +D    E +G    L   E R+L     N GK V++  I  A
Sbjct: 123 RRSQPSRRIVSLGDIRIDTDRAYVERKGVELTLSALEYRLLLLFATNPGKLVSRDMIRDA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           ++      +EEN +  +I +LR K+ +     + + + R LGY 
Sbjct: 183 LWDSAGTYIEENTLSVYIKRLRDKIEDDPSRPELIQTVRGLGYK 226


>gi|322804625|emb|CBZ02177.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 228

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 90/224 (40%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + ++         +   +    + E         + +V  ++  L   G   L
Sbjct: 4   ILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLP--GVDGL 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R     + +I ++        +   + G DD + KP +  E+  R+ AI RR+ 
Sbjct: 62  EVCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++N    GP ++    +      E   +   E  +++  + N GK   + ++   
Sbjct: 122 AVKESNDNIITGGPFKIDLYSKKIYKNKEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           ++G +D   +  +V+ +I +LR K+         + +    GY 
Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224


>gi|312143607|ref|YP_003995053.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904258|gb|ADQ14699.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 225

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 107/223 (47%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++    +   +D    E + +   E+ L+  A  + + I   L+       
Sbjct: 4   ILIVEDEYKIRKIITSYLEEDY---EVYEAENGEKALKLFADNNFNLIILDLMIPKLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  SQ+P+I ++   S +  +D F+ G DD + KP   RE+ AR+ A+ RR   
Sbjct: 61  KVCQKIRQSSQIPIIMLTAKSSEENKIDGFNYGTDDYITKPFSPRELKARIKAVLRRSND 120

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           SN       + G I+++ +    +   +   L   E +IL  L+ N  + +++ Q+ + +
Sbjct: 121 SNKASIITLKDGNIKIYPEEMVVKQDNDNCDLTSTEFKILMELINNARQVLSREQLANKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            GL + +  +  +++HI  +RKKL+ K   + + +    GY  
Sbjct: 181 MGL-EFSGFDRTIDTHIKNIRKKLKLK-KDEYIVTVYGAGYKF 221


>gi|295837253|ref|ZP_06824186.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826427|gb|EFG64844.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 237

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 18/229 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G  +               A  D++ ++  +   G   + 
Sbjct: 14  LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRVAAPDIALLDVMVP--GMDGVS 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR    
Sbjct: 72  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 131

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     ++     G + V ++G +   +G+   L   E R+L    A  G  +++ 
Sbjct: 132 GGGGEPVETGADGPLRFGDLEVDTEGMEVRREGKRIALTPTEMRLLLEFSAAPGTVLSRD 191

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 192 QLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 235


>gi|121598313|ref|YP_991950.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|134279900|ref|ZP_01766612.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|217419846|ref|ZP_03451352.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|238562735|ref|ZP_00439964.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242314238|ref|ZP_04813254.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|251767807|ref|ZP_04820262.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|121227123|gb|ABM49641.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|134249100|gb|EBA49182.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|217397150|gb|EEC37166.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|238522054|gb|EEP85501.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242137477|gb|EES23879.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|243061672|gb|EES43858.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 283

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     +    L +   E    +   L       +
Sbjct: 66  ILLVEDDRMIAEGVRKALKADGCAVDWVQDGDA--ALTALGGEAYDLLLLDLGLPKRDGI 123

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 124 DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 183

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 184 GRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 243

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 244 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 279


>gi|319779219|ref|YP_004130132.1| Two-component system response regulator OmpR [Taylorella
           equigenitalis MCE9]
 gi|317109243|gb|ADU91989.1| Two-component system response regulator OmpR [Taylorella
           equigenitalis MCE9]
          Length = 247

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 97/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       + G ++      + +E  ++  RE+ + I   ++  GE  L
Sbjct: 11  ILVVDDDPRLRELLKKYLTEQGYTVTAVE--DGKEMSKACQRENFNIIVLDIMLPGEDGL 68

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA +   P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 69  SICRRLRATNDMTPIIMLTAKSEDIDRIIGLEMGADDYIVKPFNPRELLARINAVLRRNT 128

Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V           +     GP ++    R      E  P+   E  IL+    +  + +++
Sbjct: 129 VEFEHPGAPSTEDLVVNFGPFKLNLSTRTLTKNDEPVPMTTGEFAILKVFARHPREPLSR 188

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++     G   E  +   ++  IS++RK +  N      + +   LGY  
Sbjct: 189 YKLMELARGKEYENFD-RSLDVQISRVRKLIEVNPSYPQFIQTVWGLGYVF 238


>gi|295108701|emb|CBL22654.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 227

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  +     +G +   +++    E L    ++ V+ I   L+  G    
Sbjct: 5   ILIVDDDMAINDMLVKYLRKNGYT--TYSAYSGTEALLFLEKQKVNLIILDLMLPGLSGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++   I+    VP+IG+S     ++ +    +G DD V KP    E+LAR+  I RR+  
Sbjct: 63  QVLAEIKKTKNVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRIYE 122

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN+    G + + + G +  ++ +  PL + E  IL+ LM +  +   K  I+  +
Sbjct: 123 NQYTSNSLLCCGDLNLDTIGMEATLKKQKLPLTKNEFAILKMLMEHPQQVFTKDMIYEQL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +    E   EN +  HIS LRKK+         + +   +G+ +D
Sbjct: 183 WNEALE-GSENAINVHISNLRKKIAAIDNSKSYIKTVWGIGFKMD 226


>gi|240850128|ref|YP_002971521.1| two-component response regulator [Bartonella grahamii as4aup]
 gi|240267251|gb|ACS50839.1| two-component response regulator [Bartonella grahamii as4aup]
          Length = 228

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S++     +    L ++   DV  ++  L+ +    L
Sbjct: 3   ILVIEDDHETGHYLEKAFLEVGHSVDVAYDGDTGYALATTENYDVMVVDRMLLHR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SIIAELRAKGNETPVLILSALGQVNDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       +       L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDRNILLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLHTVRGAGYML 221


>gi|218437945|ref|YP_002376274.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218170673|gb|ACK69406.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 238

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 104/228 (45%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   +      +   +   ++   +      +L+    E   AI  +L+ K    
Sbjct: 3   LLLVEDEPDLGAIIQRMLNRENYLVDWVQDGATAWNYLEQEWIEYSVAIFDWLLPK-ISG 61

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LEL + +R  +  +P++ ++    +Q  +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LELCQRLRQQNCSLPVLILTAKSDIQDMVTGLDAGADDYLIKPFVKAELLARIRALQRRA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQI 173
           L +  ++ + GP+ +                +  PL   E R+LEY M +  + + + Q+
Sbjct: 122 LHIQPSQLQIGPLTLDYAKSSVFTSNSQGKPQTIPLTANEFRLLEYFMKHPNQTLTRDQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++   D  +  NVV + I  LR+KL +    D +++    GY ++
Sbjct: 182 LAQLWETDDAPI-SNVVSARIRLLRRKLADYGCKDLIETVHGFGYRLN 228


>gi|168179958|ref|ZP_02614622.1| two-component response regulator [Clostridium botulinum NCTC 2916]
 gi|182669104|gb|EDT81080.1| two-component response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G ++   +S++  +   +  + D+  ++  L        
Sbjct: 4   ILLVEDNMSLNRGIQFSLMKEGYNVIATDSMKESQQKLNKEKVDLIILDINLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S +P+I ++   S    ++  D G DD + KP   RE+++RV AI RR   
Sbjct: 62  DYCLDIRKTSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRTSN 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N  ++  I  + +    E  G+   L + E ++L+Y M N  K ++K QI  +++ 
Sbjct: 122 DCDFNIIQSKDIFFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIESLWN 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           +  E + EN V  +I ++R+K+       + + + R +GY 
Sbjct: 182 IDGEFINENTVAVNIRRIREKIEEVPSKPEYIQTIRGIGYV 222


>gi|114569487|ref|YP_756167.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339949|gb|ABI65229.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 225

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   +         D G +++     E   ++  +   DV  ++  L    G  VL
Sbjct: 4   LVVEDDPDLNRQLGRALEDAGYAVDAAVDGEDGHFMGDTEPYDVVVLDLGLPKMDGVTVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E  R  +A    P++ ++        +  FD+G DD + KP H  E+LAR+ A+ RR   
Sbjct: 64  E--RWRQAGRDFPVLILTARDRWSEKVAGFDAGADDYLTKPFHTEELLARMRALTRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    E G + + + G    + G    +   E R+L YL  ++ + +++T++   IY  
Sbjct: 122 HTTATIECGGLSIDTRGARVFIDGAPVKVTSHEFRMLSYLAHHQDRVISRTELVEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  + +LRKK+    G D +++ R LGY +
Sbjct: 182 -DFDRDSNTIEVFVGRLRKKI----GTDRIETVRGLGYRL 216


>gi|17549661|ref|NP_523001.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431915|emb|CAD18593.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 226

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A V D        +G  +    +    E LQ +   + + +   L+  G   L
Sbjct: 3   ILVIEDDARVSDFLSRGLRAEGYRV--LLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA  + VP++ ++    +   +     G DD + KP    E+LAR+ A+ RR +
Sbjct: 61  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N  +   + +  +       G+   L  +E   LE LM+  G+  ++ +I S +
Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRERILSNV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  ++ +  N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 181 WGANEDPL-TNIVDVYVRRLRSKIDEGQPVPLLKTVRGLGYRLD 223


>gi|217970660|ref|YP_002355894.1| osmolarity response regulator [Thauera sp. MZ1T]
 gi|217507987|gb|ACK54998.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 257

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++       + G S++        +        D+  ++  L   GE  L
Sbjct: 9   ILVVDDDARLRELLSRYLQEQGFSVKAVGDAPMMDRALHREHYDLIVLDLMLP--GEDGL 66

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +RA  +Q+P+I ++        +   + G DD V KP + RE++AR+ A+ RR  
Sbjct: 67  SICRRLRAAENQIPVIMLTAKGDDVDRIVGLEMGADDYVAKPFNPRELVARIQAVMRRQP 126

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G ++V    R     GE   L   E  +L+ L+ +  + +++ +
Sbjct: 127 HTLPGAPTPEDEIVAFGRVKVNLGTRVLVRDGEEIQLTTGEFSLLKVLLTHPRQPLSRDK 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +     G  +  V +  ++  +S+LRK + +       + +    GY  
Sbjct: 187 LMELARGR-EYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVF 234


>gi|301052222|ref|YP_003790433.1| putative response regulator [Bacillus anthracis CI]
 gi|300374391|gb|ADK03295.1| probable response regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 223

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  L        
Sbjct: 3   LLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMLPE--MDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +E             +   DV  ++  L       LE
Sbjct: 5   LIVEDEENLAKFVGLELKHEGYEVETVLDGRAGLDAALANNYDVILLDLMLPE--LNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   + P+I ++   S+   +   D G DD + KP    E+LAR+ ++ RR+ + 
Sbjct: 63  VARRLRESKKTPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLRRIAIE 122

Query: 123 NN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          +R+  + R      ++  L +RE  +L  L+ N     ++ Q+  
Sbjct: 123 TESNDKHRAIINFKDLRIEKENRIARRDNQIINLTKREYDLLLTLVENINVVQSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            ++G FD  VE NVV+ +I  LR K+ +       + + R  GY +
Sbjct: 183 EVWG-FDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVM 227


>gi|224588150|gb|ACN58774.1| DNA-binding response regulator [uncultured bacterium BLR8]
          Length = 239

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + D         G  +       E E+W+ +     V  +   L+  G+  
Sbjct: 17  ILIVEDEDKIADVLRDYLVQAGYDTHRLARGDEVEDWVMA---NGVELVLLDLMLPGKSG 73

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S   +I ++        L   + G DD + KP   RE++ARV A+ RR +
Sbjct: 74  LEVCRGLRTFSNAAIIMVTAKVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSQ 133

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   A    G +++        + G+   L   E ++L  L +  G+  ++ Q+  A+Y
Sbjct: 134 GAGAAATPRAGGLQLDDSRWKATLDGQDLDLTAVEFKLLSVLASQPGRIFSRDQLMDAMY 193

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              +  V +  V+SH+ KLR+K+       + + S   +GY  +
Sbjct: 194 -RDERIVADRTVDSHVKKLRRKIAEVVPDHEFIHSVYGVGYQYE 236


>gi|30260728|ref|NP_843105.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525845|ref|YP_017194.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183566|ref|YP_026818.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871773|ref|ZP_02216417.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635679|ref|ZP_02393990.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640647|ref|ZP_02398908.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688512|ref|ZP_02879719.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708249|ref|ZP_02898695.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653779|ref|ZP_02935880.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568234|ref|ZP_03021143.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196035780|ref|ZP_03103183.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041341|ref|ZP_03108635.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227816558|ref|YP_002816567.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229600912|ref|YP_002865173.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684351|ref|ZP_05148211.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722153|ref|ZP_05183942.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738815|ref|ZP_05196518.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743799|ref|ZP_05201483.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755039|ref|ZP_05207073.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762227|ref|ZP_05214071.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254096|gb|AAP24591.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500993|gb|AAT29669.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177493|gb|AAT52869.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712498|gb|EDR18031.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511362|gb|EDR86747.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528938|gb|EDR91694.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126905|gb|EDS95786.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667537|gb|EDT18293.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081171|gb|EDT66247.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560726|gb|EDV14702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991747|gb|EDX55712.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196027826|gb|EDX66439.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227006713|gb|ACP16456.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265320|gb|ACQ46957.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 3   LLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPE--MDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|332974230|gb|EGK11163.1| DNA-binding response regulator [Kingella kingae ATCC 23330]
          Length = 231

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G  ++  + ++    L +  R D+  ++  L       +
Sbjct: 6   ILVVEDEMPIQTLIAFSLQQAGFDVQCASHVQAARELIAQQRHDLLLLDWMLPD--GDGV 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR- 117
                +RA       P+I ++           F  G DD + KP   RE++AR+ A  R 
Sbjct: 64  SWIAELRAQPATAALPIILLTARSEDADKEHGFAQGADDYLTKPFSPRELIARIHARLRH 123

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R++ +   +  + G +++  D +              E ++L +LM +  +  ++ Q+  
Sbjct: 124 RVQAALPVSLIQMGNLQLNPDTQRVNAGSLHLECSSSEFKLLHFLMQHPERVFSRRQLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D  VEE  V++ I +LR+ L        + + R  GY  
Sbjct: 184 HVWGE-DAFVEERTVDTQIGRLRRLLETANIGHYIQTVRGSGYRF 227


>gi|291294702|ref|YP_003506100.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469661|gb|ADD27080.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 221

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L+DD   +++        +G   E   +    E LQ   + DV  ++  L    G +V 
Sbjct: 5   LLVDDDPAIREVLGVYLRQEG--CEVLEATNGLEALQLLPQADVVILDLMLPQLTGWQVA 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R  R +  +PL+ ++        +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 63  QELR--RDYPDLPLLMLTARGEEAERIQGLELGADDYVTKPFSPREVVARVRALLRRSGF 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +    R+   +G+   L + E  +L  L  + G   ++ ++   ++G  
Sbjct: 121 KQE-LVFGDLILRPRQREALFKGQALNLSKLEFDLLLTLAQHPGLVWSRERLLERVWG-S 178

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           D    + VV+ H++ LRKKL  +      +++ R +GY  
Sbjct: 179 DFPGVDRVVDVHVAGLRKKLGEDAENPLYIETVRGVGYRF 218


>gi|205375079|ref|ZP_03227870.1| two component transcriptional regulator [Bacillus coahuilensis
           m4-4]
          Length = 234

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   + D        +G  +      +    L +     +  ++  +  +     
Sbjct: 4   ILLADDEESILDVCRRYLELEGYRVITATDGQDALKLVNEYSPHLIVLDIMMPIQ--DGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I ++     +  +     G DD + KP   +E++ RV  I RR+  
Sbjct: 62  HVAEQVRVSRDTPIIMLTALGQERDRIYGLSIGADDYLVKPFSPKELVLRVNNILRRVYR 121

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    E        G +++ +D R  E   +   L  +E  +L  L  +  +  +K+Q+ 
Sbjct: 122 TGGVKEEQPSLIRFGELKIDTDRRLVERNRKEIELTVKEYDLLVLLSRHPKQVFSKSQLI 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++G ++   + N V  HI +LR+K+  +      + +   +GY  +
Sbjct: 182 EKVWG-YEYDGDANTVNVHIRRLREKIEMDPSNPQFIHTVWGIGYRFE 228


>gi|229137374|ref|ZP_04265986.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228646073|gb|EEL02295.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 229

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 9   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPE--MDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 NLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 240

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLVEDDRDIATLLRLNLQDEGYKIVHEADGARALALLDKQVWDAVILDLMLPHV--DGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++ARV A++RR  
Sbjct: 65  EICRRIRQMARYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALFRRQE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +++         + +    R+  ++GE+  L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNIRLEGGMISCHGLAIDPLAREVRLRGELVDLTPREFDLLYWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+ R+    + + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRTKIERDAAEPEVILTVWGKGYKF 231


>gi|17548876|ref|NP_522216.1| two component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431126|emb|CAD17806.1| probable two component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 228

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +       + G  ++   +      L +    D+  ++  L        
Sbjct: 3   LLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATMGDYDLLVLDVMLPD--LDGW 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +RA    VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+ +R +   + +    R     G+   L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFTPKLIQTVRGMGYVLE 222


>gi|331002009|ref|ZP_08325529.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411805|gb|EGG91210.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 225

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 108/226 (47%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD A ++         D ++++GF  LE ++  Q+       +D+  I   ++   
Sbjct: 6   ILVVDDEARMRK-----LVKDFLTIKGFIVLEAQDGEQALKVFDENKDIKLILLDVMMPK 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E   ++R +S+VP+I ++     +  L  +  GVD+ + KP   + ++ARV A+ R
Sbjct: 61  LDGFETLEVLRQYSKVPVIMLTARSEERDELLGYKLGVDEYITKPFSPKILVARVEAVLR 120

Query: 118 RL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    S  +   G I +    R   +  +   L  +E  +L Y + N+G  +++ +I S+
Sbjct: 121 RTIGESEEKLVAGAIEIDKVARSVYIDQKPVDLSFKEYELLTYFIENKGIALSREKILSS 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++  +D   +   +++H+ KLR K+  +   D + +   +GY  + 
Sbjct: 181 VWN-YDYFGDARTIDTHVKKLRAKMGERG--DYIKTVWGMGYKFEV 223


>gi|237784979|ref|YP_002905684.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757891|gb|ACR17141.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 234

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +   +       +  S   D   ++  +         
Sbjct: 11  LVVDDEANIVELLKVSLKFQGFEVATASDGGEALDIARSFHPDAFILDVMMPR--MDGFT 68

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++   ++   +     G DD V KP    E++ R+  I RR+  
Sbjct: 69  LLSKLRADGHDAPVLFLTAKDAVDDRIHGLTIGADDYVTKPFSLEEVVTRLKVILRRVSP 128

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                + R     + +  +  +    GE   L   E ++L YLM N    ++K +I   +
Sbjct: 129 PEVDDDQRITYADLTLDDNSHEVTKAGEYVDLSPTEFKLLRYLMVNAEVVLSKAKILDHV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+ +K     + + R +GY +
Sbjct: 189 WN-YDFGGDGNVVESYVSYLRRKV-DKDEPHLIQTVRGVGYVL 229


>gi|148543356|ref|YP_001270726.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152766|ref|YP_001841107.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|194467516|ref|ZP_03073503.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227364430|ref|ZP_03848520.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325683629|ref|ZP_08163145.1| response regulator [Lactobacillus reuteri MM4-1A]
 gi|148530390|gb|ABQ82389.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224110|dbj|BAG24627.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|194454552|gb|EDX43449.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227070523|gb|EEI08856.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977979|gb|EGC14930.1| response regulator [Lactobacillus reuteri MM4-1A]
          Length = 229

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   +  ++  E    L ++    +  ++  +       
Sbjct: 3   ILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  S +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  MDVIKRVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    GP+ +  D  +   ++G+V  L   E  IL  L ++  +  +   IF
Sbjct: 121 GEVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ++
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227


>gi|269838051|ref|YP_003320279.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787314|gb|ACZ39457.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 244

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++             D+  ++  L G     L
Sbjct: 7   ILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPG-DIDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IRA  + +P++ ++    +   +   D+G DD + KP    E+LARV A+ RR +
Sbjct: 66  EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +       + + +  R          L  RE  +L   M +  + + +  I
Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D   E NV+E ++S LR+ L        + + R  GY++
Sbjct: 186 MERVWG-YDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYAL 231


>gi|168818174|ref|ZP_02830174.1| response regulator [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205344977|gb|EDZ31741.1| response regulator [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320086566|emb|CBY96337.1| probable transcriptional regulator ycf27 OmpR-like protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 240

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
 gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 228

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  +D   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVTV--EVNGREGLETALEKDFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKTPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLSILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|228924395|ref|ZP_04087631.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835257|gb|EEM80662.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 228

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++       +DG  +    + + +E L      +V  I   ++       
Sbjct: 5   ILIVEDEDILREIVKDYLLNDGYEI--LEATDGKEALSIFEEHEVHLIILDIMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLK 120
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +   R  
Sbjct: 63  SVCRRIRKTSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYS 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +   +  I +    R   V  E   +   E  IL YLM N+G  + + Q+ +
Sbjct: 123 SVISVTNEDTLMSSGIHIHFPSRTVTVDKEAKSITHTEFEILTYLMQNQGNVITREQLIT 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G ++ A ++  + SHI  LR KL  K   + + +    GY  +
Sbjct: 183 KIWG-YEFAGDDRTINSHIRNLRHKLGKK--ANHIVTVVRAGYKFE 225


>gi|170758276|ref|YP_001787361.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405265|gb|ACA53676.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 221

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +  + G  +E          +      D+  ++  L        
Sbjct: 5   ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGEFDLIILDVMLP--KIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            +  IIR  S +P+I ++     +  +  F+  VDD + KP     ++ RV A+ RR   
Sbjct: 63  VVCEIIRKESSMPIIMLTALGEEEDEMKGFELKVDDYIIKPFSINLLIKRVEAVLRRANG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +N+      I ++       V  +   L  +E +ILE L++N G+  ++  + + I+
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +  V+++HI  LR+KL      D + + R +GY I+
Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIE 220


>gi|319760961|ref|YP_004124898.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
 gi|317115522|gb|ADU98010.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
          Length = 228

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       ++G  ++   +      + S    D+  ++  L   G    
Sbjct: 3   LLIVEDEAKLADYLRKGLSEEGYVIDVAVNGIDGLHMASDGHYDLIVLDTMLP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R + Q P+I ++    ++  +    +G DD + KP    E++AR+  + RR   
Sbjct: 61  GLLAALRQNKQTPVIMLTARHRIEDRVRGLKTGADDYLVKPFAFSELVARIEVLLRRAAG 120

Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +      G ++V    R     G+   L  +E ++L  L+  +G+ +++T+I   
Sbjct: 121 TAPAPDALVLCLGDLQVDLARRRATRAGQRIDLSAKEFQLLTLLLRRKGEVLSRTEIAEQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +     NV++  + +LR KL        + + R +GY ++
Sbjct: 181 VWDV-NFDHGTNVIDVAVRRLRSKLDLPFERPLLHTVRGMGYVLE 224


>gi|298247348|ref|ZP_06971153.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550007|gb|EFH83873.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 230

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       ++  S++     +  + L   A  D+  ++  L  K    L
Sbjct: 3   ILVIEDNYRLSESLKTNLVNERYSVDAAYDGQEGQDLAELAPYDLIILDILLPKK--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R    Q P++ ++   S+   +   D G DD + KP    E+LAR+ A+ RR +
Sbjct: 61  EVCRELRRRRVQTPILLLTARDSIDDRVRGLDCGADDYLVKPFAMNELLARLRALLRRQQ 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + R E G + +       E +G+   L  RE  +LEY M + G+ V +  I   I+ 
Sbjct: 121 PYKSARLEIGSLVIDPATHTVEREGQAIELTPREYALLEYFMYHPGQVVTRDMIEQHIWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV++ ++ +LR+K+        + + R +GY +
Sbjct: 181 -YDFECSSNVIDVYVRRLRRKIDAPFTTKLLATIRGVGYCL 220


>gi|237732127|ref|ZP_04562608.1| transcriptional response regulatory protein [Citrobacter sp. 30_2]
 gi|226907666|gb|EEH93584.1| transcriptional response regulatory protein [Citrobacter sp. 30_2]
          Length = 240

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDLVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSEVPIMMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ V         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQMDADSPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDTEQSFIRAVYGVGYRWEAD 235


>gi|226948577|ref|YP_002803668.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841560|gb|ACO84226.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G ++   +S++  +   +  + D+  ++  L        
Sbjct: 4   ILLVEDNMSLNRGIQFSLMKEGYNVIATDSIKESQQKLNKEKVDLIILDINLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S +P+I ++   S    ++  D G DD + KP   RE+++RV AI RR   
Sbjct: 62  DYCLDIRKTSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRTSN 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N  ++  I  + +    E  G+   L + E ++L+Y M N  K ++K QI   ++ 
Sbjct: 122 DCDFNIIQSKDIVFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIENLWN 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           +  E + EN V  +I ++R+K+       + + + R +GY 
Sbjct: 182 IDGEFINENTVAVNIRRIREKIEEVPSKPEYIQTIRGIGYV 222


>gi|160915463|ref|ZP_02077674.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
 gi|158432583|gb|EDP10872.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
          Length = 235

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 99/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G  +  + +      L+   +ED+      ++      +
Sbjct: 5   ILIVEDEVGIRETISVFMKNQGYHV--YVAENGMAGLELLQKEDIHLAIVDIMMPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R +  +P+I +S        +   + G DD V KP    E++ARV +  RR + 
Sbjct: 63  TMTMKLRENYDIPVIFLSAKSEDIDKITGLNVGADDYVTKPFEPMELIARVNSNLRRYQQ 122

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                            + G + +  + ++  ++ +   L  +E +ILE LM   G+  +
Sbjct: 123 ILRLKQGKKEEEQGVLLQVGDLMLNQETKEVSIRKKSVHLTSKEFKILELLMGQPGRIFS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             QI+  ++   +EAV  + +  HI KLRKK+  +    + +     +GY I+
Sbjct: 183 AEQIYENVW--EEEAVNTDTIMVHIRKLRKKIEADPRNPEYIKVVWGIGYKIE 233


>gi|289770395|ref|ZP_06529773.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289700594|gb|EFD68023.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 285

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +                R D   ++  L       L 
Sbjct: 62  LVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPD--MDGLS 119

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 120 VLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 179

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R++     G + +  D  +    G+   L   E  +L +LM N  + ++K QI   +
Sbjct: 180 ADRRSDSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRV 239

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 240 W-SYDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 280


>gi|229155489|ref|ZP_04283597.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342]
 gi|228627807|gb|EEK84526.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342]
          Length = 242

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+   +  +      ++      +
Sbjct: 16  ILIVDDDQDIVRFMNVNLIQEGFKV--FSAHNGEEALEIINKNCIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   +  E   L + E  IL  + A + +     +I
Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEASRTVMLYRETINLTKTEYDILFLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  +      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 241


>gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
 gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
          Length = 233

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 105/232 (45%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE--WLQSSAREDVSAIEAFLIGKGEK 59
            ++++D   +++  +      G  +   NS E     + ++    DV+ ++  +   G  
Sbjct: 4   ILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMP--GID 61

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + + +R  S  + +I ++        +     G DD V KP    E++ARV ++YRR
Sbjct: 62  GLTVCKELRKKSGNLGIIMLTAKTQEMDKVTGLMLGADDYVTKPFSPSELVARVDSLYRR 121

Query: 119 LKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + ++  R E        +G   +    R  + +G +  L + E +I+EY  +N G  + +
Sbjct: 122 VAIAEMREENNFQEELVSGDFVLNLRNRALKKKGRMIELTQVEFQIMEYFFSNPGVALDR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           T I + ++G      EE +V+ +I +LR K+ ++      + +   LGY  +
Sbjct: 182 TNILTHVWGEA-YYGEEKIVDVNIRRLRMKIEDEPSNPKHIVTVWGLGYKWE 232


>gi|194468210|ref|ZP_03074196.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194453063|gb|EDX41961.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 239

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 107/236 (45%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +    E  ++ +E EE   ++  + D+  ++  L  K   
Sbjct: 3   ILMIEDNHSVCEMMAMFFKKEKWQYEFAYDGVEAEEKFNAAPHKWDIILLDLNLPKK--D 60

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++   IR  S  VPLI ++   +    +   + G DD V KP     ++AR+ A+YRR
Sbjct: 61  GMQVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSTITLIARIKALYRR 120

Query: 119 LKVSNNR------------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRG 165
             ++                +T   ++ +  R+  + G+    L  +E  +L+ L +   
Sbjct: 121 THLNKLEEVQETDSDDTFDIQTKNFKMNTKTREVFLYGKPVSDLTPKEFDLLKTLASKPR 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++Q+   ++  ++   +E  V++HI KLR+KL N +G   + +   +GY  D
Sbjct: 181 QVFTRSQLLQLVWD-YEYYGDERTVDAHIKKLRQKLEN-IGPQVIKTVWGVGYKFD 234


>gi|189351379|ref|YP_001947007.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221200185|ref|ZP_03573228.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221206662|ref|ZP_03579674.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221211364|ref|ZP_03584343.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|189335401|dbj|BAG44471.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221168725|gb|EEE01193.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|221173317|gb|EEE05752.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221180424|gb|EEE12828.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 220

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     + E  L +   E    +   L       +
Sbjct: 3   ILLVEDDRMIAEGVRKALRSDGFAVDWVQ--DGESALTALGGESYDLLLLDLGLPKRDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 216


>gi|326341835|gb|EGD65618.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           O157:H7 str. 1125]
          Length = 222

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWIGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYMLVAN 219


>gi|225862542|ref|YP_002747920.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225787819|gb|ACO28036.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +   D   ++   + E   +L      D   ++  +        
Sbjct: 3   LLVVEDNASLLESIVQIL-HDEFEVDTALNGEEGLFLALQNIYDAILLDVMMPE--MDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|163751031|ref|ZP_02158262.1| DNA-binding response regulator [Shewanella benthica KT99]
 gi|161329192|gb|EDQ00191.1| DNA-binding response regulator [Shewanella benthica KT99]
          Length = 237

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++       D   +L+  +  E   +  S    D + I+  L       +
Sbjct: 3   ILLVEDDIELQNNLKQHLLDANFTLDVASDGEDGLFQGSEYIYDAAIIDIGLP--KLNGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   +R      P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR  
Sbjct: 61  ELITKLREQEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELIARLNALIRRSA 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     GP  + +   + +  G++  L   E ++ E+ M + G+  +KT +   IY 
Sbjct: 121 GKASPLVYNGPFSINTSTLEVKKSGQLMNLSSSEYKLFEFFMLHPGEVKSKTVLIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +LRKKL        +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNQLGLIETLRGQGYRL 220


>gi|154688064|ref|YP_001423225.1| MrsR2 [Bacillus amyloliquefaciens FZB42]
 gi|154353915|gb|ABS75994.1| MrsR2 [Bacillus amyloliquefaciens FZB42]
          Length = 240

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +  I  F  +G S +    +             ++  ++  L       
Sbjct: 8   ILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVMLPDT--DG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L   IR+H+ VP++ ++   +    L  F  G DD + KP +  EI+ARV A  +R+ 
Sbjct: 66  FTLCSKIRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRMT 125

Query: 121 VSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             ++        +    ++  +     V G     P +E ++L Y   +  + ++K QI+
Sbjct: 126 QLSSSYPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIY 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             ++G F     ++ V  H+ +LR+KL         + + R  GY  +
Sbjct: 186 KDVWGEF--YGGDSTVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIFE 231


>gi|90022993|ref|YP_528820.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952593|gb|ABD82608.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 225

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++      F      +E     E   +L S    D++ ++  L       +
Sbjct: 3   LLVIEDEQAIRQQLEDFFKSQKFVIESAEDGEEGLYLGSEYDYDLAIVDIGLP--KLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +RA     P++ ++     Q  +D  ++G DD + KP H  E+ AR  A+ RR  
Sbjct: 61  EVVKTLRARGRNFPILILTARGHWQDKVDGLEAGADDYLVKPFHTEELRARANALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      GPI + +  +   + G    L   E   LEYL  N GK ++KT +   +Y 
Sbjct: 121 GKAAPEMVFGPININTANKSVSLNGAAVELTSFEYNTLEYLALNAGKPISKTVLTEHLYH 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL       P+ + R LGY  
Sbjct: 181 Q-DFERDSNVIEVFIGRLRKKLDPDGDLKPIKTVRGLGYRF 220


>gi|323463631|gb|ADX75784.1| heme response regulator HssR [Staphylococcus pseudintermedius ED99]
          Length = 225

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 95/219 (43%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G   +       E  L+   +  +      ++  G    E
Sbjct: 6   LIVDDDPEILNYVATHLQHKGY--QAVTVASGEAALEYLEKHTIDIAIVDVMMDGMDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           L   ++   + P+I ++   +L      F +G DD V KP    E++ R+ A+ RR + V
Sbjct: 64  LCETLKYDYEYPVIMLTARDALSDKERAFLAGTDDYVTKPFEVAELIFRIQAVLRRYQIV 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +      G + +     + +V+ +   LP +E  +L  L+A   +   + Q+   I+G+ 
Sbjct: 124 TETLLTLGNLTIDQTQLEVKVETKGMILPHKEFELLSLLVAYPKQVFPREQLIEKIWGI- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   +E  V+ HI +LR +L+       +++ R +GY +
Sbjct: 183 DYEGDERTVDVHIKRLRARLKKLGANVYIETVRGIGYKV 221


>gi|319781666|ref|YP_004141142.1| transcriptional regulator domain-containing protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317167554|gb|ADV11092.1| transcriptional regulator domain-containing protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 222

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 128/220 (58%), Positives = 163/220 (74%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LV +GY +LF  +G++  GF S EF EW+ S+A  D+ ++ AFLIG   + 
Sbjct: 1   MIVIVDERELVTEGYNSLFDREGIACAGFASGEFGEWVNSAADTDLRSVRAFLIGDCREG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              PR IR  +  P+I +S+  SL+ TL  F+SGVDDV+ KP+H REILAR+ AI RR +
Sbjct: 61  SISPRQIRDRTGAPVIALSEQHSLENTLRLFESGVDDVIRKPVHIREILARITAIRRRAQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G +R+F DGRDPE+ G+  PLPRRERRILEYL +NRG+RV KTQ+F+AIYG+
Sbjct: 121 EDVAYTEIGAMRIFMDGRDPEIDGQPLPLPRRERRILEYLASNRGRRVTKTQVFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FDE VEENVVESHISKLRKKLR KLG DP+DSKRFLGY +
Sbjct: 181 FDEEVEENVVESHISKLRKKLREKLGTDPIDSKRFLGYRL 220


>gi|312964390|ref|ZP_07778684.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
 gi|312290867|gb|EFR18743.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
          Length = 227

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVSDLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|302387089|ref|YP_003822911.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197717|gb|ADL05288.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 228

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG   L    G  L+   ++     + + ++ D+  ++  L        
Sbjct: 4   ILLLEDDLSLIDGLSCLLKRQGFELDIARTVREANTIWTDSKYDLLILDVSLPD--GSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R  S+VP+I ++        +   D G DD + KP     +L+R+ A+ RR K 
Sbjct: 62  EVCQKVRQVSKVPIIFLTASDEELNIVTGLDIGGDDYITKPFKLGVLLSRINALLRRAKN 121

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +    +  I+V          G++  L   E R+L  LM N    ++K +I   ++
Sbjct: 122 FGEHDTEIISNGIKVLLLQGQAYKGGQLLDLTTAEYRLLCLLMQNPNIILSKEKILEKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
              +  V++N +  +I +LR K+  N      + + R +GY   WN
Sbjct: 182 DGDESYVDDNTLAVYIRRLRIKIEQNPGEPQMLLTVRGMGYK--WN 225


>gi|161779849|gb|ABX79411.1| VanRc4 [Enterococcus casseliflavus]
          Length = 231

 Score =  221 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +E F               DV+ ++  L        
Sbjct: 5   IIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR     P++ ++        +     G DD V KP +  E++ARV    RR + 
Sbjct: 63  QLLQNIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N  A        E   + +  +     + G+   L   E +IL YL  ++G  VA   +
Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F A++         N V +HI++LR+KL         + +   +GY I+
Sbjct: 183 FEAVWKEK-YLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIE 230


>gi|253687171|ref|YP_003016361.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753749|gb|ACT11825.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 226

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G S      L  +E +  +   D +A+   ++      +
Sbjct: 3   ILLVDDDVELGDMLCEYLNAEGFSTS--RVLTGKEGVDGAMSGDYTAMILDVMLPDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR   Q+P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 61  DVLRQIRKTQQLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYDD 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K   + A +G + +    R  E +G+ F L   E  +LE L+ +  + V+K ++  
Sbjct: 121 QPSTKRDESVAASGDLVLNPATRISEWRGQPFDLTASEFNLLELLLRSPERVVSKDELSE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 KCLGRRREAYD-RSVDVHISNIRQKLSALPGSTMTIETVRSVGYRI 225


>gi|210617979|ref|ZP_03291838.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
 gi|210149053|gb|EEA80062.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
          Length = 225

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 104/224 (46%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD + ++         +G  + E  + +E  +    +    +  ++  +       
Sbjct: 6   ILVVDDESRMRKLVKDFLEREGHIIIEAADGMEAMDIFYENKDIALIILDVMMPR--MDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R +RA SQVP+I ++     +  L  F+ GVD+ ++KP   + ++ARV AI +R +
Sbjct: 64  WQVCREVRALSQVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVNAILKRGR 123

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +    + G I +       ++      L  +E  +L Y + N+   +++ +I + ++
Sbjct: 124 AAASEDLIDAGVIVIDKAAHLVKIDDVPIDLSVKEFELLTYFVENQKMALSREKILNNVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +D   +   +++H+ KLR KL  K   + + +   +GY  + 
Sbjct: 184 D-YDYFGDARTIDTHVKKLRSKLGEKG--NYIKTIWGMGYKFEV 224


>gi|196046810|ref|ZP_03114032.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022345|gb|EDX61030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 223

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +   D   ++   + E   +L      D   ++  +        
Sbjct: 3   LLVVEDNASLLESIVQIL-HDEFEVDTALNGEEGLFLALQNIYDAILLDVMMPE--MDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKEIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|157370255|ref|YP_001478244.1| DNA-binding transcriptional regulator PhoP [Serratia proteamaculans
           568]
 gi|157322019|gb|ABV41116.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 223

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 105/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L++        + G  ++     +  ++       D++ ++  L   GE  L 
Sbjct: 4   LVVEDNGLLRHHLSVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIVDLGLP--GEDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  RAH  ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRAHQMKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIVLPPFQIDLSRRELSVNEQQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKVQAEYPQEVITTVRGQGYRFD 221


>gi|186683796|ref|YP_001866992.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466248|gb|ACC82049.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     S++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDDRTSEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEELLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G + +  +  +     +   L   E  +L  L+   G+ V+ ++
Sbjct: 122 TDRIPQAAKHSEILNYGSLTLVPERFEAIWFNDTVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILREVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|237728197|ref|ZP_04558678.1| two-component system response regulator [Citrobacter sp. 30_2]
 gi|226910208|gb|EEH96126.1| two-component system response regulator [Citrobacter sp. 30_2]
          Length = 222

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLETGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRIRQKKYSLPVLILTARDTLKDRVSGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      + +    R   + G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVSNLTLNIGRRQVWMDGQEVILTPKEYALLSRLMLKAGSPVHREILYNDIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 180 SWDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRGFGYML 216


>gi|289578661|ref|YP_003477288.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|297544881|ref|YP_003677183.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528374|gb|ADD02726.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|296842656|gb|ADH61172.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 234

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G  +    + +         + D+  ++  L       LE
Sbjct: 6   LVIEDEVHILELLRYNLEAAGYKVITSENGKEGLDKALEEKPDLVILDLMLPDV--DGLE 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +I++ +     +P+I ++        +   + G DD + KP   RE+LAR+ A+ RR 
Sbjct: 64  ICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRT 123

Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +      E     G I + +       +G+V  L  +E  +L+ L  N GK + +  +  
Sbjct: 124 QQPEEEKEEIIRFGDIVIDTGKHLVYKKGKVLDLTLKEFELLKLLSQNMGKVLTRDYLLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++G ++ A E   V+ HI  LRKK+ +       +++ R +GY +
Sbjct: 184 KVWG-YEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKL 228


>gi|332992634|gb|AEF02689.1| two component transcriptional regulator [Alteromonas sp. SN2]
          Length = 229

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +     +G +    N  E    + +  +E  +AI    +  G   L 
Sbjct: 8   LIVEDEDKIAQILVEFLALEGFTSTVLN--EGTHVVDTVKKEVPAAIILDRMLPGVDGLT 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + +R+ S VP+I ++        L   ++G DD V KP   RE++AR+ A+ RR    
Sbjct: 66  ICKSLRSFSMVPIIMLTARVDEIDRLIGLEAGADDYVCKPFSAREVVARIQAVLRRATQQ 125

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + S+ +     I +     +  V G +  L   E R+L+ +M   G   ++ Q+   
Sbjct: 126 NQTESSSEKLTFRHIELDMSRFECAVDGNIIELTPVEFRLLKTMMTKPGVVYSRDQLMEL 185

Query: 177 IYGLFD-EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             G  D   V    ++SH+  LR KL       P+ +   +GY +
Sbjct: 186 --GYDDGRVVSNRTIDSHMKNLRHKLATAEHTSPIHAVYGIGYKV 228


>gi|332981849|ref|YP_004463290.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699527|gb|AEE96468.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 229

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++     F   G S+    + E           D+  ++  L   G    
Sbjct: 4   ILIIEDEKPIREFIKIGFERSGYSIVEATTGEDGIRKAREQTPDMVILDIILP--GIDGF 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R    ++ +I ++        +   + G DD V KP +  E++ R  AI +RL 
Sbjct: 62  NVCKTLRQEFPRMGIIMLTARNLEMDRIMGLEYGADDYVIKPFNPLELILRAEAILKRLH 121

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++         +GP ++ +  +     G    L  +E  +LE L+++    ++K ++  
Sbjct: 122 GNSQTSDRETLTSGPFKIATYAQKVYKHGMEIELTPKEYLLLETLISHPNVVMSKDKLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
            ++G ++   +   V+  + +LRKK+ +       +++   +GY 
Sbjct: 182 IVWG-YEFDGDSKSVDVQVHRLRKKIEDDPAKPRYIETVWGIGYR 225


>gi|305672956|ref|YP_003864627.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|305411199|gb|ADM36317.1| two-component response regulator (paired with YcbM) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 230

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G   E  ++ + EE ++   ++    I   ++      +
Sbjct: 4   ILLVEDDHSISEMVDHYLTKEGF--EMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +  +IIR  S +P++ IS              G DD + KP    E+ ARV A  RR   
Sbjct: 62  DFLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N       + +  D       GE   L   E ++L    AN  K   K QI+
Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++   +   ++N++  H+ +LR K+ +       + +   +GY +
Sbjct: 182 RSVWNE-EYFGDQNIINVHMRRLRGKIEDDPSSPQYIKTLWGIGYKL 227


>gi|300864039|ref|ZP_07108940.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300337962|emb|CBN54086.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 229

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 94/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +E     +    L      D   ++  L        
Sbjct: 6   ILVVDDDPAIRNLIHRYLSQQGYQVESAGDGQTALGLFEQLNPDFVILDVNLPDT--TGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L + +++ + V ++ ++        +  F+SGVDD + KP    EI  RV AI +R + 
Sbjct: 64  KLCQEMQSRTGVFVVMLTSRTDEADKIKGFESGVDDYITKPFSLVEIGFRVGAILKRKRI 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GP+ +    R+  + G+   L   E  +L  L +  G+   + ++   +
Sbjct: 124 VTPAEQQSLIFGPLAIDPVRREVMLSGQTVSLTALEFDLLYCLASKPGRVWRRAELLQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++   ++ VV+ HI ++R+K+  +      + + R +GY  +
Sbjct: 184 WD-YEYVGDQRVVDVHIGQIRRKIEPDANQPSMIQTVRGVGYKFE 227


>gi|228932078|ref|ZP_04094970.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827661|gb|EEM73403.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 242

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNQ 138

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 139 HA-QIQYHGILWNEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 236


>gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 231

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G  +E   +      +    + D+  ++  L       LE
Sbjct: 7   LIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNIIREIKFDLILLDLMLPE--IDGLE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + IR     S +P++ I+        +   + G DD + KP   RE++ARV A+ RR 
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K   N  + G + V    R+     +   L  +E  +L+ L+ N+   + +  +   I
Sbjct: 125 NFKKEENIIKFGDVVVNFKTREVIKGTQNVELTLKEFELLKLLIKNKDNILTRELLLDKI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G ++   E   V+ HI  LRKK+  +      + + R +GY    N
Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|71907879|ref|YP_285466.1| two component heavy metal response transcriptional regulator
           [Dechloromonas aromatica RCB]
 gi|71847500|gb|AAZ46996.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dechloromonas aromatica RCB]
          Length = 225

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++          L  +   D++ ++  L   G    
Sbjct: 3   ILVVEDEQKTGDYLRQGLMEAGFIVDLARDGFDGLHLALTEAYDLAVLDVMLP--GIDGW 60

Query: 62  ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + I RA   +P++ ++    ++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  QVLQGIRRAGKDMPVLFLTARDDVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  ++      + +    R     G+   L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 KAKESDLLNAADLELDLMRRRVTRSGKKIDLTSKEFALLEVLLRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKVDDGFEPKLIRTVRGMGYVLE 222


>gi|228908986|ref|ZP_04072816.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228850708|gb|EEM95532.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 223

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFV--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 122 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|212637675|ref|YP_002314200.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212559159|gb|ACJ31613.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 225

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +  +  F + G ++E          L +S + D+  ++  L       L
Sbjct: 3   ILMVEDDATTVEYVVKGFIEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQ--LDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R +
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGE 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP+ +    R   + G+   L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SQPMVTDLSVGPLSIELLTRKVTLDGQEILLQPKEFQLLKYLMEHENQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  +D   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVTV--EVNGREGLETALEKDFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR   
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + ++     + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|294812995|ref|ZP_06771638.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325594|gb|EFG07237.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 250

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E          L++     V  +   L   G   LE
Sbjct: 30  LLAEDDASISEPLARALRREGYEVEVREDGPA--ALEAGLAGGVDLVVLDLGLPGMDGLE 87

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 88  VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 147

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               A  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 148 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 207

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 208 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 248


>gi|171319254|ref|ZP_02908370.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171095556|gb|EDT40520.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 239

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + D       D+   +   +S +  E L+   + +  A+   L+  G   L
Sbjct: 7   ILIVEDDADIADVLSLHLRDERYEV--VHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 65  EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++     +   + +    R+  V G    L  RE  +L +   + GK  ++  +
Sbjct: 125 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G   E   E+ V +HI++LR K+  +      + +    GY +
Sbjct: 185 LNAVWGYRHE-GYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 231


>gi|289674391|ref|ZP_06495281.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 220

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G +L+     +    L +   E    +   L       L
Sbjct: 3   LLLVEDDRAIGQGIRVALNTEGYTLDWLE--DGLSALHALRSEPFDLLLLDLGLPRMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA +  +P++ ++        +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +    +G   P+   E ++L  LM   GK V + ++ + +YG
Sbjct: 121 GRAQPLLEHAGISLDPTSQQVSFKGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E  I  LRKKL      + + + R +GY ++
Sbjct: 181 WQDK-VESNTLEVLIHNLRKKL----STELIRTVRGVGYLLE 217


>gi|312115807|ref|YP_004013403.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220936|gb|ADP72304.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 226

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D      G+ G   E     E      +S++ DV  ++  L       L 
Sbjct: 4   LIVEDDRTAADFLAKALGEAGFQTEIAGDGEAAFDSATSSKFDVLIVDRMLP--KLDGLT 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           L   +R      P++ +S   ++   +    SG DD + KP    E++ARV A+ RR   
Sbjct: 62  LVERLRERGDTTPVLILSALGAVDDRVKGLRSGGDDYLPKPYSLVELVARVEALTRRGPT 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +      G + +          GE   L  RE R+LEYLM + G+ V +T +   ++ 
Sbjct: 122 ERAVTTYAVGDLVLDRLSHKVSRGGETIVLQPREYRLLEYLMKHAGQVVTRTMLLENVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR K+    G   +++ R  GY I
Sbjct: 182 -YHFDPQTNVIDVHISRLRSKIDKGQGKPLLETVRGAGYMI 221


>gi|170780989|ref|YP_001709321.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155557|emb|CAQ00673.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 269

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D        +G  +    +           + D   ++  L       L+
Sbjct: 46  LVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPD--LDGLQ 103

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +   +RA +  +P++ ++   SL   L    +G DD V KP    E++AR+  + RR   
Sbjct: 104 VLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSTL 163

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +     G + +  D  +    G+   L   E  +L YLM N  + ++K QI   
Sbjct: 164 VVSDTVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILDR 223

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + +VVE +IS LR+K+ +      + + R  GY +
Sbjct: 224 VW-SYDFGGKSSVVEIYISYLRRKI-DAGRNPMIHTVRGSGYML 265


>gi|156933326|ref|YP_001437242.1| DNA-binding transcriptional regulator BaeR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156531580|gb|ABU76406.1| hypothetical protein ESA_01139 [Cronobacter sakazakii ATCC BAA-894]
          Length = 240

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILVVEDEPKLGALLVDYLRAASYAPTLINHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSEVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCKP 130

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   +    P+ +         + +   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRDLQAQDAQSPLIIDEGRFQASWRQKPLDLTPAEFRLLKTLSGEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL       P + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDDEQPFIRAVYGVGYRWEAD 235


>gi|39934999|ref|NP_947275.1| two-component transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|192290532|ref|YP_001991137.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39648850|emb|CAE27371.1| two-component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192284281|gb|ACF00662.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 241

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D  +  F + G   +  +  E    +  S   DV  ++  L  +    L
Sbjct: 18  LLIIEDDRESADYLVKAFREVGHIADLASDGEEGLAMAESGDYDVLVVDRMLPKR--DGL 75

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R   ++ P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 76  SVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +          GE   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 136 GPAEETSYRVADLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 196 D-YHFDPQTNVIDVHISRLRSKIDKGFDHPLLHTIRGAGYMI 236


>gi|317132922|ref|YP_004092236.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470901|gb|ADU27505.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 236

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 94/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  I      G  +    + E    L  S   ++      ++  G    
Sbjct: 5   ILVVEDEQAIREFVIINLKRAGYEVLEAGTGEAALKLYESHGNEIRIALLDIMLPGIDGF 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R  S+   +I ++        +     G DD V KP    E++ARV A+YRRL 
Sbjct: 65  AVCRELRQKSKTLGIIMLTARTQEMDKVGGLMIGADDYVTKPFSPSELVARVDALYRRLN 124

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +     E      +G   + +  R    +G+   L + E +I++Y + N    +++  I 
Sbjct: 125 LEAGEKEDENGIVSGDFVLNTKSRTFYRRGQPIELTQMEYQIMKYFLENPDTALSRGDIL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
           + ++G  D   E  +V+ +I +LR K+  +      + +    GY 
Sbjct: 185 NHVWGE-DYFGELKIVDVNIRRLRMKVEEDPSAPRHILTVWGFGYK 229


>gi|289428091|ref|ZP_06429794.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|289158691|gb|EFD06892.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|313820661|gb|EFS58375.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823192|gb|EFS60906.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313825530|gb|EFS63244.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|314924865|gb|EFS88696.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314978112|gb|EFT22206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314986186|gb|EFT30278.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989598|gb|EFT33689.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315084809|gb|EFT56785.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315088297|gb|EFT60273.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|327327165|gb|EGE68942.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL096PA3]
 gi|328754980|gb|EGF68596.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|332675749|gb|AEE72565.1| DNA-binding response regulator MtrA [Propionibacterium acnes 266]
          Length = 236

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S  G         +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLMLP--GRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
            + + IR  S VP+I ++        +    +G DD V KP    E++AR+ A  R    
Sbjct: 68  RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G +    +  +V  H+ +LR K+ RN      + + R +GY I+
Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230


>gi|220935638|ref|YP_002514537.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996948|gb|ACL73550.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 216

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 90/208 (43%), Gaps = 8/208 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++         G  ++        +   +S   D+  ++  L   G   ++
Sbjct: 11  LIVEDEPAIREMVSFALARAGFEVDEAVDGGEAQERIASRLPDMILLDWMLP--GTSGID 68

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L R ++       VP+I ++        +   ++GVDD V KP   RE++AR+ A+ RR 
Sbjct: 69  LARRLKRDEYTRDVPIIMLTARGEEDDRVGGLEAGVDDYVTKPFSPRELVARIKAVMRRT 128

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N     E   + +        V G    +   E R+L++ M +  +  +++Q+   +
Sbjct: 129 VPENEDKPLEVDGLTLDPGSHRASVDGNALEMGPTEFRLLQFFMTHPERVYSRSQLLDRV 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL 205
           +G  +  VEE  V+ HI +LRK L    
Sbjct: 189 WGR-NTYVEERTVDVHILRLRKALGPSG 215


>gi|212636326|ref|YP_002312851.1| DNA-binding response regulator [Shewanella piezotolerans WP3]
 gi|212557810|gb|ACJ30264.1| DNA-binding response regulator [Shewanella piezotolerans WP3]
          Length = 233

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++            +++  +  E   +       D + I+  L       +
Sbjct: 3   LLLVEDDLALQSNLKQHLLAANYTVDTADDGEIGLFQGKEYNYDAAIIDVGLP--KLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L   +RA + + P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR  
Sbjct: 61  ALITELRALTIEFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     GP  + +   +    GE+  L   E ++LEY M + G+  +KT +   IY 
Sbjct: 121 GKASPVINNGPFSLNTSSLELTKNGELISLSGSEYKLLEYFMLHIGEVKSKTVLTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +LRKKL        +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDADNQLGLIETLRGQGYRL 220


>gi|228907578|ref|ZP_04071435.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL
           200]
 gi|228852070|gb|EEM96867.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL
           200]
          Length = 229

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++ +         G +++       E+ LQ    ED   +   ++  G    
Sbjct: 4   ILIIEDEAIIAELEKDYLEVAGYTVDI--DYSGEKGLQRVLLEDYDLLILDIMLPGIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  EICKQVRLEKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++  +      + +    R   V G    L  +E  +L  +  +  +  +K ++F
Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G+ D   +   V  H+  +R+K+  +      + +   +GY  
Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRQKIELDPFDKSYIGTIWGVGYRF 227


>gi|256377936|ref|YP_003101596.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255922239|gb|ACU37750.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 227

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++        D+G ++    S E    L      DV  ++  L   G   L 
Sbjct: 6   LMVEDDAHIRQALGLALEDEGFAVSEAVSGEQALALLDRRAFDVVLLDLMLP--GVDGLH 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R++R+   +P+I ++     +  +   ++G DD V KP+    + AR+ A+ RR   +
Sbjct: 64  VCRVLRSRGDLPVIVVTARADAEDVIAGLEAGADDYVTKPLVAAVLAARIRALLRRSGGA 123

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G + V  D R     GE   L R E R+L  L+A  G+ V + Q+ + ++G 
Sbjct: 124 AQADELRAGDLVVRQDNRTAHRAGEQVHLTRTEFRLLVELLAAEGRVVTREQLLNRVWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +D   +  +++ HI +LR+K+         V + R  GY I
Sbjct: 183 YDYFGDTRLLDVHIRRLRRKVEPDPDTPALVLTVRGSGYRI 223


>gi|206969330|ref|ZP_03230285.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|206736371|gb|EDZ53529.1| regulatory protein VanR [Bacillus cereus AH1134]
          Length = 229

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +   ++ +  E L++     +  I   ++      +
Sbjct: 7   ILIVDDDIEIRKIVSIYLKNEGYEI--IDASDAIEALETLRNTTIDLIILDIMLPKMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR   Q+P+I +S        +    SG +D + KP +  E++AR+ +  RR +V
Sbjct: 65  EACLKIREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      E G ++V  + R   ++ E   L  +E  IL  L+ N+GK  +  +I+ 
Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++        +N V  HI+K+R+K+         + +   +GY +
Sbjct: 185 MVW-EDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYRV 229


>gi|75907669|ref|YP_321965.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701394|gb|ABA21070.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 224

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +    +  + G  ++     E  EWL S    D+  ++  L       L
Sbjct: 3   ILLVEDDYEQLEPLQGILSEAGYIVDTAEDGEIAEWLISQKDYDLLILDWMLPT--ISGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L R  R +    P++ ++   +    +   D+G DD + KP    E+LARV A+ RR+ 
Sbjct: 61  SLCRQYRCSGKTAPILMLTARDTTPDKVMGLDAGADDYLVKPADLVELLARVRALARRVP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      +++       E +     L  RE R+LEYLM +  + + ++QI  A++ 
Sbjct: 121 NWQGDSLRVADLQLHLAYLTVEREQLKVELSPREARLLEYLMRHPNQVLTRSQIEEALW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +    E N +   + KLR +L+     + + +   +GY ++
Sbjct: 180 EWGMEPESNALTVLVRKLRHRLQQVDAAEWIRTVYGMGYRLN 221


>gi|15672984|ref|NP_267158.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723949|gb|AAK05100.1|AE006334_6 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406546|gb|ADZ63617.1| two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 228

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   + D        +   +   F+ L   E  + +A+  +  +    +      L
Sbjct: 6   LIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFE-TAKPAIDVVLLDWMIPKLDGL 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R ++      P+I ++    +   +   D+G DD + KP    E+LAR+  I+R+  
Sbjct: 65  TVLRRMKKIQPDTPIIFLTACDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKWS 124

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S+++  E   ++V       EV G+   L +RE  +L Y + +RG  V++  I   ++G
Sbjct: 125 NSSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDDVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D   +EN V++++  LR K+        +++ R +GY ++
Sbjct: 185 M-DFDGQENTVDAYVRYLRAKIDLPNHKSLIETVRGIGYRLN 225


>gi|229009996|ref|ZP_04167211.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229131506|ref|ZP_04260397.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229165510|ref|ZP_04293290.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617958|gb|EEK75003.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651953|gb|EEL07899.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228751278|gb|EEM01089.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPE--MDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|159040471|ref|YP_001539724.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157919306|gb|ABW00734.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 228

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 9/221 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D A + D        DG  +      +         R     ++  L   G   
Sbjct: 10  LVLLVEDEATIADLVRLYLNRDGFGVHLERDGDAGLAAARRLRPVACVLDIALP--GLPG 67

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ R +R      P+I ++        +   + G DD V KP   RE++AR+ A+ RR+
Sbjct: 68  TEICRRLREAGDWTPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELVARLRAVLRRV 127

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +  D R     G+   L   E  +L +LMA  G+   + ++ + +
Sbjct: 128 AGPPPGQPRRVGVVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLAGV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +G +         + H++++R KL +      + + R +GY
Sbjct: 188 WG-YAVPAGTRTADVHVAQVRAKLGSA---SVIRTHRGVGY 224


>gi|114049392|ref|YP_739942.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113890834|gb|ABI44885.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 227

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        D   S++  +  E   +       D + I+  L       +
Sbjct: 3   LLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLYQAIEYNYDAAIIDVGLP--KLDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L R +R   +  P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     GP  + +   +     E+  L   E ++ E  M ++G+  +KT +   IY 
Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +LRKKL     ++ +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|313499723|gb|ADR61089.1| Two component heavy metal response transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 226

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A           + G + E     E  ++L  +   D+  ++  L   G    
Sbjct: 3   LLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLP--GRDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +R      P++ ++   +++  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       +R+    R  E  G    L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 SPSQDTILSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLE 222


>gi|190574616|ref|YP_001972461.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190012538|emb|CAQ46166.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 232

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D     +       + G  ++   +      L  S    +  ++  L G  G  V
Sbjct: 3   LLIVEDEPKTGNYLRQGLIEAGYVVDLACNGVDGLHLAGSGEYQLVILDVMLPGLDGWNV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L   R   A  QVP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 63  LSRLRE--AGWQVPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R     + V +  R  E  G+   L ++E  +LE L   RG+ + ++ I S ++
Sbjct: 121 AQPQAERIVIADLVVDTLRRRVERGGQRITLSQKEYTLLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFDAKLIVTVRGMGYVLE 222


>gi|183600334|ref|ZP_02961827.1| hypothetical protein PROSTU_03896 [Providencia stuartii ATCC 25827]
 gi|188020124|gb|EDU58164.1| hypothetical protein PROSTU_03896 [Providencia stuartii ATCC 25827]
          Length = 220

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G +++ F   +  +     A  D   ++  L       +
Sbjct: 3   ILLIEDDRLIGDGLKVGLSQLGFTIDWFADGKQGQVALFDAPYDAVILDLSLPSV--DGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R      P++ ++   +L   +     G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EILKFWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALAEVAARLQALIRRRS 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   + G I +          GE   L  +E  +L   + N  K +++  I   +Y 
Sbjct: 121 GQLSPILKHGHIEMDPVAMTVTCHGERIELKSKELSLLSLFLHNPNKVLSRAFIEEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE HI  LR+KL    G   + +   +GY +
Sbjct: 181 -WDEEVSSNAVEVHIHHLRRKL----GTRFIRTVHGVGYRL 216


>gi|125624324|ref|YP_001032807.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|7669466|gb|AAF66142.1| putative response regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493132|emb|CAL98096.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071107|gb|ADJ60507.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 228

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 103/225 (45%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++++D   + D        +   +    +G  +LE  E  Q+    DV  ++  +     
Sbjct: 6   LIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFE--QAKPAVDVVLLDWMIP--KL 61

Query: 59  KVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             L + R ++      P+I ++    +   +   D+G DD + KP    E+LAR+  I+R
Sbjct: 62  DGLTVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFR 121

Query: 118 RLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +   S ++  E   ++V       EV G+   L +RE  +L Y + +RG  V++  I   
Sbjct: 122 KWSTSRSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDD 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G+ D   +EN V++++  LR  +        +++ R +GY ++
Sbjct: 182 VWGM-DFDGQENTVDAYVRYLRATIDLPNHKSLIETVRGVGYRLN 225


>gi|121604441|ref|YP_981770.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593410|gb|ABM36849.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 222

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L +D +L+ DG  A     G  ++     E  E    +   + + ++  L    G  V
Sbjct: 3   ILLAEDDSLLGDGLRAGLRQLGFQVDWVRDGEAAERELRAQPYEAAVLDLGLPRKDGLDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R  R+  + P++ ++   ++   +   D+G DD V KP+   E+ AR+ A+ RR  
Sbjct: 63  LAAVR--RSGVKTPVLVLTARDAVPERIRGLDAGADDYVVKPVDLHELAARLRALVRRAH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R     + +    R     GE   L  RE  +L+  M +  + +++ Q+   +Y 
Sbjct: 121 GQPQERLSAQDVELDPASRTVRKAGEPVTLSTREFDLLQAFMLSADRVLSREQLEQQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + VE N +E HI  LR+KL    G   + + R +GY +
Sbjct: 180 SWGQEVESNAIEVHIHNLRRKL----GPALIHTVRGVGYML 216


>gi|120553936|ref|YP_958287.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120323785|gb|ABM18100.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 233

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 99/229 (43%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +       D G++    +  +           D+  ++  L   G   L 
Sbjct: 6   LIIEDNPGIGELVRMQVSDLGMTAVLRDRGDSGLARFRDGGIDLVILDLMLP--GLDGLA 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA +  VP++ ++   +    +   + G DD + KP    E+ AR+ A++RR+  
Sbjct: 64  VCREIRASAGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARIKALFRRVDA 123

Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +            E   +R+    R   ++     L  RE  +L +  ++RG+  ++ Q
Sbjct: 124 LSRKSSAEDDVAEIEADGLRIDPVRRRVFLECRELDLTAREFDLLWHFASHRGRVFSRAQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  A++G ++    E+ V +HI++LR K+  +      V +   +GY  
Sbjct: 184 LLDAVWG-YNHDGYEHTVNTHINRLRNKIEPDPAEPRYVQTVWGVGYRF 231


>gi|332671154|ref|YP_004454162.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332340192|gb|AEE46775.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 264

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 87/231 (37%), Gaps = 19/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +       F  +G  +E            +  + D+  ++  L   G   LE
Sbjct: 31  LVVEDEPAIAQAVAHRFSAEGWRVEVAADGPSGVSAATRVQPDLVVLDVMLP--GIDGLE 88

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY------ 116
           + R I+A   VP++ ++        L     G DD + KP   RE++AR  A+       
Sbjct: 89  VCRQIQAERPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARTKALLRRQERA 148

Query: 117 ------RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                     V +     G + V    R          L   E  +L  L  +    + +
Sbjct: 149 ARAAEIAVAAVPDPPLVIGDVTVDRAQRRVTRGDREVHLTPTEFDLLVALANSSRTVLTR 208

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + ++   D +     V+SH+  LR+KL    G D + +   +GY+ +
Sbjct: 209 ERLLAEVWDWVDASG-TRTVDSHVKALRRKL----GADLIRTVHGVGYAFE 254


>gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 246

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 24  LIVDDEAPLAELLSMALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVMLPD--MDGLT 81

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 82  VLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGT 141

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  R+E     G + +  D  +     +   L   E  +L +LM N  + ++K QI   +
Sbjct: 142 AVARSESTLVVGDLVLDEDSHEVSRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDRV 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 202 WN-YDFGGQANVVELYISYLRKKI-DAGRSPMIHTRRGAGYLI 242


>gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +          +G ++           + S+   ++  ++  L       +E
Sbjct: 6   LVVEDEAGISRILQLELEHEGYTVGTAADGRTGYEMASTGEWELVLLDVMLPE--LNGIE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     VP+I ++   ++   +  F+ G +D + KP    E+LARV  I R  + 
Sbjct: 64  VLRRLRQAGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNILRIFQQ 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +E       G + +    R    +  V  L  RE  +L YL+ N+ +  ++  I S
Sbjct: 124 YPKESEGSDLIKVGDLTIELRTRKVYRKEIVIELTPREFELLVYLVENKNEEKSREDILS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D   E N+V+ +I  LR+KL        + + R +GY I
Sbjct: 184 EVWG-YDFIGETNLVDVYIRYLRQKLDKGYRHKLIHTVRGVGYMI 227


>gi|218898303|ref|YP_002446714.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228901739|ref|ZP_04065911.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228966150|ref|ZP_04127212.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218542653|gb|ACK95047.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228793519|gb|EEM41060.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228857871|gb|EEN02359.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 225

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +  F + + +   +   +E++      ++       
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKV--FEAEDGKIAQEVLEKENIHLAIVDIMMPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|42782326|ref|NP_979573.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|217960663|ref|YP_002339227.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222096718|ref|YP_002530775.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228986323|ref|ZP_04146460.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229139866|ref|ZP_04268431.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|229197364|ref|ZP_04324091.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|42738251|gb|AAS42181.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|217065124|gb|ACJ79374.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221240776|gb|ACM13486.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228585988|gb|EEK44079.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228643531|gb|EEK99797.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|228773350|gb|EEM21779.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 225

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G ++  F + + +   +   +E++      ++       
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFTV--FEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|329939486|ref|ZP_08288822.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301715|gb|EGG45609.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 233

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 99/235 (42%), Gaps = 28/235 (11%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++        DG ++    +G + LE       S R D++ ++  +   G 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLESF----RSRRPDIALLDVMVP--GL 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 62  DGVSLCRRIRDESNVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121

Query: 119 LKVS-------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
              +                   G + V + G +    G    L   E R+L    A  G
Sbjct: 122 FGHAGGMRGEEDDPAAEGGVLTFGELEVDTGGMEVRRSGRPVSLTPTEMRLLLEFSAVPG 181

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 182 TVLSRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 231


>gi|313819282|gb|EFS56996.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|314960588|gb|EFT04690.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|315085982|gb|EFT57958.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
          Length = 236

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S  G         +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLMLP--GRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
            + + IR  S VP+I ++        +    +G DD V KP    E++AR+ A  R    
Sbjct: 68  RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G +   ++  +V  H+ +LR K+ RN      + + R +GY I+
Sbjct: 188 G-YTNIIDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230


>gi|229122769|ref|ZP_04251978.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228660633|gb|EEL16264.1| DNA-binding response regulator [Bacillus cereus 95/8201]
          Length = 225

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +  F + + +   +   +E++      ++       
Sbjct: 6   ILLADDDKHIRELLQYHLQKEGFKV--FEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|254413738|ref|ZP_05027507.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179335|gb|EDX74330.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 227

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D    +   +G  ++     +    L   +  D+  ++  L  +    L
Sbjct: 3   ILLVDDEVELTDPLSRVLKREGYEVDVAYEGQSGRQLAMQSDYDLLILDWMLPHQ--SGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R      P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  ELCQQLRSQGKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELLARVRALLRRSA 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +      R     + +  + +     G +  L  +E ++L+Y M + G+ +   +I+  
Sbjct: 121 ATETNAPVRLRVASLELDVENQLAYRNGRLIELSEKETQLLDYFMRHSGQLLTHGEIYQQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   +E    NV+ + +  LR+K+        + +    GY +
Sbjct: 181 LW-QDEEQPSSNVLAALVRLLRRKIEAPGEAPLIHTVYGKGYRL 223


>gi|187933115|ref|YP_001885875.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187721268|gb|ACD22489.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 230

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +  F + +  + L+    ED+  +   ++       
Sbjct: 6   ILVVDDDKTITEAIGVYLVNEGYKI--FKAYDGIQALKVIDEEDIHLVILDIMMPNMNGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR   Q+P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 64  RTTIKIREERQIPIIMLSAKSEDTDKILGLNLGADDYITKPFNPLELIARVNSQIRRYTK 123

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K +NN      I +  + ++  V GE   L   E +IL  LM N  +  +  +I+ 
Sbjct: 124 FSPLKENNNVITVAGIELNKESKEVFVDGENIRLTPLEFKILTLLMDNPNRVFSIEEIYE 183

Query: 176 AIYGLFDEAVEEN--VVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   +E V  N   V  HI ++R+K+  N      +     +GY I+
Sbjct: 184 RVW---NEPVFNNVDTVTVHIRRIREKIEINPKEPRYLKVVWGIGYKIE 229


>gi|218438132|ref|YP_002376461.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218170860|gb|ACK69593.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 227

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 102/227 (44%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQS-SAREDVSAIEAFLIGKGEK 59
            +L++D   + +            ++      E    L S     +++ I+  L   G  
Sbjct: 3   ILLVEDEPDLGEALKKALNQKKYIVDWVQDGTEAWNCLDSQWTEYNLAIIDWLLP--GMS 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +EL + +RA    +P++ ++    ++  +   D+G DD + KP    E+LAR+ A+ RR
Sbjct: 61  GIELIKRLRARQNSLPVLMLTAKDQMEDKVIGLDAGADDYLVKPFGMAELLARLRALGRR 120

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++   + + G + +    R    QG +   L  +E  +LEY   +  + +   QI + 
Sbjct: 121 SPQLVPQQLQRGDLILDYGTRTVFYQGNQTLSLTTKEFLLLEYFFNHPNQILTSEQIRNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++ + +E +  NVV + +  LR+KL      + +++   +GY  + N
Sbjct: 181 LWEMGEEPM-SNVVAAQVRLLRRKLETVDCKNVIETVHGVGYRFNLN 226


>gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator
           PHOP [Mycobacterium tuberculosis H37Rv]
 gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator
           PHOP [Mycobacterium bovis AF2122/97]
 gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive
           regulator phoP [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis F11]
 gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 94_M4241A]
 gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T92]
 gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T17]
 gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive
           regulator [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 1435]
 gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis C]
 gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis str. Haarlem]
 gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 605]
 gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T17]
 gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T92]
 gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis 210]
 gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN R506]
 gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu001]
 gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu003]
 gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu004]
 gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu008]
 gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu007]
 gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu010]
 gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu002]
 gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu005]
 gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu006]
 gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN V2475]
 gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
           REGULATOR PHOP [Mycobacterium tuberculosis H37Rv]
 gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
           REGULATOR PHOP [Mycobacterium bovis AF2122/97]
 gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive
           regulator phoP [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis C]
 gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis str. Haarlem]
 gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis F11]
 gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive
           regulator [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 605]
 gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T17]
 gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T92]
 gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu001]
 gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu002]
 gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu003]
 gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu004]
 gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu005]
 gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu006]
 gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu007]
 gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu008]
 gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu010]
 gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CDC1551A]
 gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis W-148]
 gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 4207]
          Length = 247

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +           R D   ++  +   G     
Sbjct: 24  LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMP--GMDGFG 81

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 82  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N      R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 202 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 243


>gi|311111412|ref|ZP_07712809.1| DNA-binding response regulator VicR [Lactobacillus gasseri MV-22]
 gi|311066566|gb|EFQ46906.1| DNA-binding response regulator VicR [Lactobacillus gasseri MV-22]
          Length = 214

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 89/211 (42%), Gaps = 12/211 (5%)

Query: 19  FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78
              +G  ++     E           D+  ++  L  K    LE+ R +R    +P+I +
Sbjct: 1   MTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKK--DGLEVAREVRQTHDMPIIMV 58

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------TGP 130
           +   +    +   + G DD V KP  +RE++ARV A  RR  ++    E           
Sbjct: 59  TAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDLTQKATEDDEDKNITISN 118

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + +  +    E  GE   L  RE  +L YL  + G+ + +  +   ++G +D   +   V
Sbjct: 119 LVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHLLQTVWG-YDYFGDVRTV 177

Query: 191 ESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +  + +LR+K+ +      +  ++R +GY +
Sbjct: 178 DVTVRRLREKIEDNPSSPTILVTRRGVGYYV 208


>gi|239627954|ref|ZP_04670985.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518100|gb|EEQ57966.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 236

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++G        G  +  F + +  E L++    ++      ++      +
Sbjct: 6   ILLVEDDKEIREGVEIFLKSQGYVV--FQAADGLEGLKALEDNEIDLAIVDVMMPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +R     P+I +S        +   + G DD + KP    E+LARV +  RR   
Sbjct: 64  TMTAKLREKYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSHLRRYHR 123

Query: 120 ---KVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              ++S+ +AE       G + V  +  +  V  +   +   E +IL  L+ N G+    
Sbjct: 124 FLDRLSSKQAEDPRIHRLGGLEVNEETVEVMVDDKPVKVTPIEFKILLLLIQNPGRVFPA 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +I+  ++   + A+  + V  HI  LR+K+  N      V     +GY I+
Sbjct: 184 EEIYERVWN--ERAINTDTVMVHIRNLREKIEVNPREPKYVKVVWGVGYKIE 233


>gi|241554112|ref|YP_002979325.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240863418|gb|ACS61080.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 234

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G++     +    E + +  R ++  I   +       L
Sbjct: 5   ILVVDDEPHIRDVICFALERAGLA--WMAARNGTEAMAAFRRGNIDLIILDIGMPEMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 63  EVCRQIRKTSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVKAILKRSSN 122

Query: 122 SNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + +   GR          +   E  IL+ L++      ++ Q+  
Sbjct: 123 GAEPDRRHATLVAGELSLDRRGRTVMFGENTIAMTALEFAILDALLSRPDMVFSREQLME 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A YG     V +  ++SHI  +R K     G   + + R +G+ +
Sbjct: 183 AAYGAGTY-VADRTIDSHIRNIRAKFLVAGGQGIIATVRGIGFKL 226


>gi|294143010|ref|YP_003558988.1| DNA-binding response regulator [Shewanella violacea DSS12]
 gi|293329479|dbj|BAJ04210.1| DNA-binding response regulator [Shewanella violacea DSS12]
          Length = 225

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +  +  F + G ++E  +       L +S + D+  ++  L       L
Sbjct: 3   ILLVEDDTTTIEYVVKGFVEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQ--LDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   +  R  
Sbjct: 61  KLLAALRATGSQTPVLILSALGHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMLRGL 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +    R   + G    L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 AKPTETELSVGNLLMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221


>gi|218283223|ref|ZP_03489293.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989]
 gi|218216041|gb|EEC89579.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989]
          Length = 233

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 19/234 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED--VSAIEAFLIGKGEK 59
            ++ DD A +++    L   +G  +     +E ++  +     D  +  I   ++     
Sbjct: 5   ILVADDNAEIREILRILLTGEGYEV-----IEAKDGNEVLQLFDSSIDLIVLDIMMPNMN 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             +    +R  S VP++ ++           F SG DD + KP  + E+ ARV A+ RR 
Sbjct: 60  GYQTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRY 119

Query: 120 KVSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +V   + E              + +    ++ EV G+   L   E  IL  LM N  +  
Sbjct: 120 QVYKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIF 179

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  Q++   +         N +  HI  LRKK+  +      + +    GY  +
Sbjct: 180 SAEQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233


>gi|167565733|ref|ZP_02358649.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis
           EO147]
 gi|167572829|ref|ZP_02365703.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis
           C6786]
          Length = 227

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G   +             +   D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEDYDLIILDVMLP--GHDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P++ ++    +   +   + G DD V KP    E++ARV +I RR + 
Sbjct: 61  TVLERLRRERSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQA 120

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++      + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RESSILRVADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV++ I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLEV 221


>gi|126658592|ref|ZP_01729739.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
 gi|126620179|gb|EAZ90901.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
          Length = 235

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 91/234 (38%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +          +    +  ++ L   +  Q  A  D+  ++  L       
Sbjct: 3   ILIVEDEMEISKLIQTTLERESFECISAYDGLTALDLFQQQA-PDLIVLDLMLP--KLDG 59

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+   IR         ++ ++        +    +G DD + KP    E++ARV A+ R
Sbjct: 60  LEVCTRIRQKLTEKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLR 119

Query: 118 RL----KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRV 168
           R        NN  ET    V  D      +      E   L   E  +L   M+  G+  
Sbjct: 120 RSLRHGGTQNNVYETPHFIVDLDKYSAIQKTDNNTEEPLELTTLEFNLLSTFMSYPGRVW 179

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++TQ+   ++G  D   +E VV++H+ +LRKK+         + +   +GY  +
Sbjct: 180 SRTQLIDKLWGN-DFFGDERVVDTHVRRLRKKIEPDTANPTYIKTVVGVGYKFE 232


>gi|166032523|ref|ZP_02235352.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC
           27755]
 gi|166026880|gb|EDR45637.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC
           27755]
          Length = 235

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 97/230 (42%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +  F + +  E L+   +E++      ++      ++
Sbjct: 7   LIVEDDKEIREGVEIYLKSQGYVV--FQAADGVEGLEVIEKEEIHLAIVDVMMPRMDGIQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR +  
Sbjct: 65  MTVKLREKYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPLELLARVNSQLRRYRRF 124

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + N    G + +  +  +  V GE+  +   E +IL  LM N G+  +  +
Sbjct: 125 MEKLGDKEKTQNIHVIGGLELDEERVEVRVDGELVKVTPMEYKILLLLMKNPGRVFSADE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   + AV  + +  H+  +R+K+  N      +     +GY I+
Sbjct: 185 IYERVWN--ERAVNTDTIMVHVRNIREKIEINPKEPKYLKVVWGVGYKIE 232


>gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
          Length = 239

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +   ++           R D   ++  +   G     
Sbjct: 16  LVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKAREVRPDAVILDVMMP--GMDGFG 73

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 74  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 133

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N R     I +  D  +    GE   L   E  +L Y + N G  ++K +I   
Sbjct: 134 GVEETRNARLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235


>gi|111027030|ref|YP_709008.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110825569|gb|ABH00850.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 252

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 17/232 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +    +   +    +      L      DV  ++  L   G   +E
Sbjct: 20  LVVDDERPLAAVVASYLEREHFEVAVAYNGVDALALAREIDPDVVVLDLGLP--GMDGIE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR + +
Sbjct: 78  VCRQLRTFSDAYVVMLTARSAEVDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRKA 137

Query: 123 -------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G + +   GR+  +  +   L R E  +L  L +  G   +
Sbjct: 138 PVYETPSPDRGGEEAPRVFGALSIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAFS 197

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + Q+  A++G       E++V+ H+  LR+KL  +      V + R +GY +
Sbjct: 198 RRQLIEAVWGES-WVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGYRM 248


>gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   N+      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLARFIELELKHEGYEILKANNGRTGVEIAEKGEVDLVLLDIMLPE--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++   
Sbjct: 62  EVLRRIRRSSDIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + +  +   +
Sbjct: 122 TVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRNTLMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYIGETNVIDVYVRYLRTKIDDVFKVKTITTVRGVGYVI 223


>gi|26988882|ref|NP_744307.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24983690|gb|AAN67771.1|AE016408_9 DNA-binding heavy metal response regulator [Pseudomonas putida
           KT2440]
          Length = 226

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A           + G + E     E  ++L  +   D+  ++  L   G    
Sbjct: 3   LLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLP--GRDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +R      P++ ++   +++  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       +R+    R  E  G    L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 SPSQDTILSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLE 222


>gi|87119833|ref|ZP_01075730.1| DNA-binding response regulator [Marinomonas sp. MED121]
 gi|86165309|gb|EAQ66577.1| DNA-binding response regulator [Marinomonas sp. MED121]
          Length = 220

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 9/219 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G       +G  ++    ++ ++ L +   E    +   L   G   L+
Sbjct: 4   LLVEDDELLGKGIKKSLTREGYQVDWL--MDGKQGLAALNTEQFDLLLLDLNLPGMGGLD 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   IR      P++ ++   SL   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  ILSAIRKQQLNTPVLILTANDSLDDKIQGLDLGADDYLPKPFEIAELKARMRALSRRHHG 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    + G + +        + G+   L RRE  +L   + + G+ +++ ++   +YG 
Sbjct: 122 HSEPTIQFGRLHINPASMQVTLDGKDLTLGRREFTLLMEFVNHPGQILSRAKLEDVVYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +D  VE N +E HI  LRKK    +  + + + R +GY 
Sbjct: 181 WDGDVESNSIEVHIHHLRKK----VYPEFIKTVRGMGYK 215


>gi|47567150|ref|ZP_00237866.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
 gi|47556206|gb|EAL14541.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
          Length = 223

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPE--MDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|110633256|ref|YP_673464.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284240|gb|ABG62299.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 224

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G   +  +  E    L      DV  I+  L  +    L
Sbjct: 3   ILIIEDDREAASFLKKAFSEAGHIADVASDGEAGFALADGGNYDVFVIDRMLPRR--DGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA+    P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SVIAGLRANGNTTPALILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLKRRAG 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G + +          G+   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 TRDVETLYRAGDLELDRLSHTVRRGGQEITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 181 D-YHFDPQTNVIDVHVSRLRGKIERGFDKPILHTVRGAGYMI 221


>gi|323706108|ref|ZP_08117677.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534552|gb|EGB24334.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 235

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A + +         G ++   ++ +           D+  ++  L       +
Sbjct: 5   ILVIEDEAHILELLRYNLEAQGYNVVLTDNGKGGLEKCKETNPDLVLLDLMLPD--IDGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + +++      +P+I ++        +   + G DD + KP   RE+LAR+  + RR
Sbjct: 63  DVCKKLKSDEHLKNIPIIMLTAKSEEVDKILGLELGADDYITKPFSIRELLARIKVVLRR 122

Query: 119 LKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            K     N   + G I + ++        E+  L  +E  +L+ L  NRGK + +  +  
Sbjct: 123 SKNESEDNEIIKFGDITIDTEKHLVYKGNELLDLTLKEFELLKLLSKNRGKVLTRDYLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++G ++ A E   V+ HI  LRKK+ +       +++ R +GY +
Sbjct: 183 KVWG-YEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKL 227


>gi|323359410|ref|YP_004225806.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275781|dbj|BAJ75926.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 244

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D        +G  +    +    + LQ++      A+   ++      + 
Sbjct: 21  LVVDDEQMLTDLLSMALRMEGWDVR--TAGSGFDALQAARDFAPDAMVLDIMMPDLDGMA 78

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + + +R + + VP++ ++   ++   +    +G DD V KP    E++AR+  + RR   
Sbjct: 79  VLQRLRHSGNDVPVLFLTAKDAVADRVAGLTAGGDDYVTKPFSLEEVVARLRGLMRRAGT 138

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + S      G + +  D  +    G    L   E  +L +LM N+ + V+K QI   
Sbjct: 139 ALTRDSEPILRVGDLSLNEDSHEVVRGGHEIELTATEFELLRFLMRNQRRVVSKAQILDR 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D     +VVE +IS LRKK+ +      + + R +GY I
Sbjct: 199 VWN-YDFGGRSSVVELYISYLRKKI-DAGHDPLIHTVRGVGYMI 240


>gi|302185041|ref|ZP_07261714.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 222

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++            +S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLP--GMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R+     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPTLESAGLNLDESRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+KL    G   V+++R  GY
Sbjct: 181 DGENE-RDSNVIEVHVNHLRRKL----GRAVVETRRGQGY 215


>gi|304317190|ref|YP_003852335.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778692|gb|ADL69251.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 235

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A + +         G ++   ++ +           D+  ++  L       +
Sbjct: 5   ILVIEDEAHILELLRYNLEAQGYNVILTDNGKEGLEKCRELSPDLVLLDLMLPD--IDGI 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + I++      +P+I ++        +   + G DD + KP   RE+LAR+  + RR
Sbjct: 63  DVCKKIKSDEHLKNIPIIMLTAKSEEFDKILGLELGADDYITKPFSIRELLARIKVVLRR 122

Query: 119 LK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            K     N   + G I + ++        E+  L  +E  +L+ L  NRGK + +  +  
Sbjct: 123 SKNETEENEIIKFGDITIDTEKHIVYKGNEILDLTLKEFELLKLLSKNRGKVLTRDYLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++G ++ A E   V+ HI  LRKK+ +       +++ R +GY +
Sbjct: 183 KVWG-YEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKL 227


>gi|302875608|ref|YP_003844241.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690139|ref|ZP_07632585.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578465|gb|ADL52477.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 222

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 102/223 (45%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +G  +    +++    ++     ++  I   L+      +
Sbjct: 4   ILVVEDDDRIRKLICNYLSKEGFEI--IEAVDGVSAIEKFKNNNIDLIVLDLMLPKLNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   IR  S V +I ++     +  L  +++G DD + KP   + ++A++ A+ +R+K 
Sbjct: 62  TVCSKIREISDVHIIMLTAKSQEEDKLIGYETGADDYITKPFSPKVLVAKIKAVLKRIKE 121

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   +   + +    R+  + GE   L  +E  ++ YL  N+G  +++  I   ++
Sbjct: 122 DEKEDGVLQFDDLIINELSREVILSGETLDLTPKEIDLILYLAKNKGIALSREHILEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G FD   +   V++++ +LR+KL++K     + + R  GY  +
Sbjct: 182 G-FDYEGDIRTVDTNVKRLRQKLKDK--ATVISTVRGSGYKFE 221


>gi|228951142|ref|ZP_04113258.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808552|gb|EEM55055.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 225

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPE--MDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|78067418|ref|YP_370187.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77968163|gb|ABB09543.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 224

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     +    L +   E    +   L       +
Sbjct: 7   ILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAA--LTALGGETYDLLLLDLGLPKRDGI 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  DVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 125 GRSESLIRHGALTLDPASHQVTLDGVPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 185 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 220


>gi|116618821|ref|YP_819192.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097668|gb|ABJ62819.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 229

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G   E  N       L      DV  ++  L       LE
Sbjct: 5   LIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPE--LNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R   + P+I ++   S+   +   D G DD + KP    E+LAR+ ++ RR+ + 
Sbjct: 63  VARRLREVKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAIE 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      +R+  + R      ++  L +RE  +L  L+ N     ++ Q+  
Sbjct: 123 TETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            ++G FD  VE NVV+ +I  LR K+ +       + + R  GY +
Sbjct: 183 EVWG-FDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVM 227


>gi|301052303|ref|YP_003790514.1| response regulator [Bacillus anthracis CI]
 gi|300374472|gb|ADK03376.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 225

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDEAKHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|296103156|ref|YP_003613302.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057615|gb|ADF62353.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 719

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 95/210 (45%), Gaps = 9/210 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +   +  +    LQ   ++   A+   L+      L
Sbjct: 4   ILLVEDDHDIAALLRLNLEDEGYIIT--HEPDGGNALQCLEKQPWDAVILDLMLPNVDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   ++G DD + KP   +E++AR+ A++RR +
Sbjct: 62  EICRRIRQITRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQ 121

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S    +   + +    R   + G++  L  RE  +L +   + G+  ++  +  
Sbjct: 122 AMGQAQSAGNIQAHGLTIDPLARSVLLHGQIVDLTPREFELLYFFARHPGEVFSRLALLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL 205
            ++G +     E+ V +HI++LR K+   L
Sbjct: 182 QVWG-YQHEGYEHTVNTHINRLRIKIEKTL 210


>gi|228963749|ref|ZP_04124890.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795894|gb|EEM43361.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 242

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN- 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 138 EHKQIQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236


>gi|229017310|ref|ZP_04174214.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
 gi|229023487|ref|ZP_04179983.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228737755|gb|EEL88255.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228744011|gb|EEL94109.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
          Length = 232

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    + S    +V+ ++  L   G    
Sbjct: 7   ILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILSEQTVNVALLDVMLP--GIDGF 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E++AR+ ++ RR++
Sbjct: 65  QVCKAIREENKKMGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELIARIQSLLRRIE 124

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNTITSGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYV 226


>gi|330445663|ref|ZP_08309315.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489854|dbj|GAA03812.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 224

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++     +   + G  ++  N+ E   +   +   D++ ++  L  +    +
Sbjct: 3   ILIVEDDAILSHHLKSQLSELGNQVQCANTAEEGLFFAENYPNDIAIVDIGLPDR--DGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R    ++P++ ++   + Q  +   ++G DD + KP    E++AR++A+ RR  
Sbjct: 61  SLIKDMRKKGLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G IRV    +   VQ  +  L   E  +LEYLM +  + V+K ++   +Y 
Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVYVQESLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  IS+LRKK       +P+ + R  GY  +
Sbjct: 180 -EDQEGDPNTIEVMISRLRKKFTKTGQDNPISTIRGQGYIFE 220


>gi|325275439|ref|ZP_08141370.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324099415|gb|EGB97330.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       ++G  ++  ++      L      D+  ++  L        
Sbjct: 3   LLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQHPYDLVILDVNLPE--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            + + +RA S   ++ ++ +  L   +   D G DD + KP    E+LAR+ ++ RR   
Sbjct: 61  TVLQRLRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +      + +          G+   L  +E  +L  LM   G+ +++TQI S ++ 
Sbjct: 121 QLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFDTKLIHTLRGVGYVLE 221


>gi|254518244|ref|ZP_05130300.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911993|gb|EEH97194.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 235

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G ++    + +  E L+   +E +  I   ++      +
Sbjct: 10  ILVVDDEKDIREIIEIYLINEGYNI--VLASDGIEALEKLKKEKIDLIILDIMMPKLDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR   ++P+I +S        +   + G DD + KP +  E++ARV +  RR+  
Sbjct: 68  RTCIKIREDKKMPIIMLSAKSEDSDKILGLNIGADDYIIKPFNPLELVARVKSQLRRVTS 127

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                ++++       +R+    R+  V+     L  RE  ILE L  NRG+ ++  QI+
Sbjct: 128 FSEAKEINDEEIYIDGLRINKANREVLVEDRNIKLTPREFDILEVLAINRGRVLSTEQIY 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++        EN V  HI  +R+K+  N      +     +GY I+
Sbjct: 188 EKVWNEP-FYNSENTVAVHIRNIREKIEINPKDPKYIKLVWGVGYKIE 234


>gi|206974313|ref|ZP_03235230.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217958161|ref|YP_002336705.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222094323|ref|YP_002528382.1| response regulator [Bacillus cereus Q1]
 gi|206747553|gb|EDZ58943.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217064677|gb|ACJ78927.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221238380|gb|ACM11090.1| probable response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPE--MDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 NLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|47568103|ref|ZP_00238808.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
 gi|47555257|gb|EAL13603.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
          Length = 225

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPT--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       D + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYR 219


>gi|312197895|ref|YP_004017956.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229231|gb|ADP82086.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 248

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 18/226 (7%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS------AREDVSAIEAFLIGKG 57
           +++D   V   Y+       + L  F  +E     ++       A   +  ++  L    
Sbjct: 29  VVEDDVNVS--YVVATA---LRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPD-- 81

Query: 58  EKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
               E+   ++A  S VP++ +S   +L   L    +G DD + KP    E++AR+  I 
Sbjct: 82  LDGFEVCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVIL 141

Query: 117 RRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR  V    +    G +R+  D R   V G    L   E ++L +L+ N G+ V++ QI 
Sbjct: 142 RRRGVLTEASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQIL 201

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++  +    E  VVE+ IS LRKK+        + + R +GY +
Sbjct: 202 DHVWD-YGFDGESTVVETFISSLRKKVDTAP-PTLIHTVRGVGYRL 245


>gi|206578805|ref|YP_002237485.1| transcriptional regulatory protein BaeR [Klebsiella pneumoniae 342]
 gi|288934410|ref|YP_003438469.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290508614|ref|ZP_06547985.1| two-component system, OmpR family, response regulator BaeR
           [Klebsiella sp. 1_1_55]
 gi|206567863|gb|ACI09639.1| transcriptional regulatory protein BaeR [Klebsiella pneumoniae 342]
 gi|288889139|gb|ADC57457.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289778008|gb|EFD86005.1| two-component system, OmpR family, response regulator BaeR
           [Klebsiella sp. 1_1_55]
          Length = 240

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G +    N  +            +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLQAAGYAPTLINHGDKVLPYVRQTPPHLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +        P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRDLQALDAQSPLIVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL         + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWEAD 235


>gi|194446630|ref|YP_002041403.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194405293|gb|ACF65515.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 240

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKNILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|328957976|ref|YP_004375362.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328674300|gb|AEB30346.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 234

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 105/233 (45%), Gaps = 22/233 (9%)

Query: 5   IDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           I+D   V +     F  +        +G   L+   +L  S   D+  ++  L       
Sbjct: 2   IEDNQSVCEMMEMFFMKEEWKATFVQDGKEGLDA--FLNDSENWDLITLDLNLPS--MDG 57

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R IR  S+ +P+I ++   S    +   + G DD V KP     ++AR+ A+YRR+
Sbjct: 58  MQICREIRKVSKTIPIIMLTAKDSESDQVIGLEIGADDYVTKPFSPLTLIARIKALYRRV 117

Query: 120 KVSNNRA----------ETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRV 168
            + ++ A          ET  +++    R+  +  +    L  +E  +L  L  +  +  
Sbjct: 118 DLIHDEAGKVDEKAYEVETKYLKMDKRTREAILYDKSIDSLTPKEFELLYTLAKSPKQVF 177

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ Q+ + ++  ++   +E  V++HI KLR+K+ +K G   + +   +GY  D
Sbjct: 178 SREQLLTIVWD-YEYFGDERTVDAHIKKLRQKI-DKTGPQVIQTVWGIGYKYD 228


>gi|313606643|gb|EFR83406.1| heme response regulator HssR [Listeria monocytogenes FSL F2-208]
          Length = 222

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +G  + E  + +E E+ +  + +  ++ I+  +       
Sbjct: 1   ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEK-IVETEQVHLAVIDVMMPN--MDG 57

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL + IRA    +P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR 
Sbjct: 58  FELCQKIRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 117

Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+
Sbjct: 118 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 177

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 178 -QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLE 219


>gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 244

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   A     G  +                  D+  ++  +   G    
Sbjct: 16  LLVVDDEPNIVELLSASLRFAGYDVTTAAHGTEALRKAREVEPDLVVLDVMMP--GLDGF 73

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R     VP++ ++   +++  +    +G DD V KP    E++ARV A+ RR  
Sbjct: 74  EVVRRLRGEDRHVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALLRRSG 133

Query: 121 VSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       +   + +  D  +    G+   L   E ++L  L+ N  + ++K Q+ 
Sbjct: 134 HREQAAAEPAVLKYADLELNEDSYEVFKAGQAVQLSLTEFKLLRCLLENAERVMSKGQLL 193

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           SA++  +D A +  VVES++S LR+K+ +      + + R +GY +
Sbjct: 194 SAVWN-YDFAGDAGVVESYVSYLRRKV-DTGEPKLLHTVRGVGYVL 237


>gi|189424064|ref|YP_001951241.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189420323|gb|ACD94721.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 223

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         ++G  ++  +  E           D+  ++  L  K    L
Sbjct: 3   ILVVEDEKKVAAFIKRGLEEEGYQVDAVHDGEEGVRQAQEQPYDLLILDVMLPSK--DGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R    V P++ ++   +    +   D+G DD + KP    E+ ARV A+ RR+ 
Sbjct: 61  SVVRELRQAGTVMPVLMLTARDTTDDIVAGLDAGSDDYLTKPFAFAELSARVRALARRIG 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      +R+    R      +   L  +E  +LE+LM N G  V +  I   ++ 
Sbjct: 121 RDRGAELVVADLRMDPLSRKVWRGDKEIELTIKEYGLLEFLMRNAGTVVTRNMIAEKVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+++ +++ +RKK+        + + R  GY++
Sbjct: 180 EHSFESFTNIIDVYVNYVRKKVDKGFDRKLIHTVRGQGYTL 220


>gi|148825917|ref|YP_001290670.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittEE]
 gi|319776338|ref|YP_004138826.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3047]
 gi|329123490|ref|ZP_08252054.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC
           11116]
 gi|148716077|gb|ABQ98287.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittEE]
 gi|301170132|emb|CBW29736.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae 10810]
 gi|309973064|gb|ADO96265.1| Phosphate regulon transcriptional regulatory protein [Haemophilus
           influenzae R2846]
 gi|317450929|emb|CBY87155.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3047]
 gi|327471072|gb|EGF16527.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC
           11116]
          Length = 231

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            ++++D   +++            +    + +F+  +        +  ++  L   G   
Sbjct: 5   ILIVEDECAIREMITLFLSQKYYDV--IEASDFKTAINKIKENPKLILLDWMLP--GRSG 60

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           ++  + I+     + +P+I ++   + +  +   ++G DD + KP   + +LAR+ A++R
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120

Query: 118 RLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R+    ++  +   + +  + +    Q +   L   E ++L + M +  K  ++ Q+ + 
Sbjct: 121 RIYEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNR 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+   D  VE   V+S+I +LR+ L        + + R  GY  
Sbjct: 181 IW-HNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRF 223


>gi|312960053|ref|ZP_07774566.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311285710|gb|EFQ64278.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 222

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A     G +++         +   S   D+  ++  L   G   L
Sbjct: 3   LLLVEDNVPLADELLAGLQRQGYAVDWLADGRDAAYQGRSEPYDLIILDLGLP--GLPGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+    RA + V P++ ++   S    ++   +G DD ++KP H  E+  R+ A+ RR  
Sbjct: 61  EVLAQWRAAALVTPVLILTARDSWAERIEGLKAGADDYLSKPFHPEELHLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   +   + +    +     GE   L   E R+L Y M +  + ++K+ +   +Y
Sbjct: 121 GQANQPTLQAAGLHLDEGRQCVLRDGEEIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   + NV+E H++ LR+KL    G   ++++R  GY  
Sbjct: 181 DG-ETERDSNVLEVHVNHLRRKL----GRSVIETRRGQGYRF 217


>gi|312978124|ref|ZP_07789869.1| phosphate regulon response regulator PhoB [Lactobacillus crispatus
           CTV-05]
 gi|310895099|gb|EFQ44168.1| phosphate regulon response regulator PhoB [Lactobacillus crispatus
           CTV-05]
          Length = 225

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   ++   +         + GF          +    D+  ++  L    E   
Sbjct: 4   IWCVEDDESIRKIEMYTLESMNFKVRGFEDGTTFVKALAEKHPDLVILDLMLPD--EDGS 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + +R +S     P+I  S   +    +   DSG DD + KP    E+++RV A+ RR
Sbjct: 62  DILKKLRGNSSTEELPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRR 121

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 ++ E   I++     +  V G+   L  +E  +L+ L+ + G   ++ +I   I
Sbjct: 122 TNHKKEDKIEKDGIKILLKRHEVYVDGQEIELTLKEYGLLKLLITHPGTVFSREEIMDQI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +       E   V+ H+  LR+ L        +++ R +GY 
Sbjct: 182 WETG-FYGETRTVDVHVRTLRQTLSEAGSH--IETVRGVGYR 220


>gi|229591602|ref|YP_002873721.1| response regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229363468|emb|CAY50681.1| response regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 223

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +  +    + G S+                  DV  ++  +        
Sbjct: 3   ILVVEDEPKAGNYLLNGLQELGYSVSLARDGVDGLHQALETPFDVIVLDVMMP--KMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E+ R +R  +  P++ ++    +   +   + G DD + KP    E++AR+  + RR   
Sbjct: 61  EVLRRLRKEADTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGPS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + +   +++    R     G    L  +E  +L     ++ + ++++ I S ++ +
Sbjct: 121 REEEQLQIADLQIDVLKRRVTRAGTRITLTNKEFALLHLFATHQDQVLSRSLIASRVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  + +LR K+ +      + S R +GY  D
Sbjct: 181 -NFDSDTNVVDVAVRRLRLKIDDPFQLKLIHSVRGIGYRFD 220


>gi|229159651|ref|ZP_04287662.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623802|gb|EEK80617.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDMALNGEDGLFLALQNIYDAILLDVMMPE--MDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  EVIQKIRNEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTKQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|227541191|ref|ZP_03971240.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227183035|gb|EEI64007.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 248

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 24  LVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPE--LDGLE 81

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 82  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 141

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V      L R E  +L  L   RG+ + +  + + 
Sbjct: 142 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRRGQALTRHDLVTE 201

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 202 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 245


>gi|226310694|ref|YP_002770588.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093642|dbj|BAH42084.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 230

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         ++G  +           +    +  V  ++  +   G    
Sbjct: 12  ILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVMMP--GMDGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+++    V  I ++    ++  +     G DD + KP    E+LAR+ A  R    
Sbjct: 70  EVCRMLKKIQNVATIMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARIRNHYP 129

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              ++   GP ++    ++    G +  L   E  +L+YL+ N G  ++K  I   ++G 
Sbjct: 130 HLLSKVHLGPFQIDDRRKEITYDGTLLELSPTEYSLLKYLVTNHGLVLSKPMILDNVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D   EEN+VE +I  LR KL ++     + + R  GY +D+
Sbjct: 189 YDFGGEENIVEVYIRSLRDKLNDRQHR-IIRTLRGAGYRVDF 229


>gi|193215940|ref|YP_001997139.1| two component transcriptional regulator, winged helix family
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089417|gb|ACF14692.1| two component transcriptional regulator, winged helix family
           [Chloroherpeton thalassium ATCC 35110]
          Length = 239

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 98/233 (42%), Gaps = 21/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++I+D   + +       D G    ++ +G + +E+      S   DV  ++  L     
Sbjct: 7   LIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYAL----SNNYDVIILDMMLP--KL 60

Query: 59  KVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LE+ + +R  H  VP++ ++        +   ++G DD + KP   RE+ ARV A  R
Sbjct: 61  DGLEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIR 120

Query: 118 RLKVSNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           R +     +            + + ++     +  +   +  +E  +L   M N G+  +
Sbjct: 121 RYRPEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYS 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +T++   ++G    +  E+ V SHI++LR K+         + +   +GY  +
Sbjct: 181 RTELLDLVWGAS-YSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFN 232


>gi|6862582|gb|AAD30120.2| DNA binding response regulator RpaA [Tolypothrix sp. PCC 7601]
          Length = 247

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +     E   L   E  +L  L+   G+ V+ ++
Sbjct: 122 TDRIPQAAKHSEILNYGPLTLVPERFEAIWFHETVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILREVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|331268289|ref|YP_004394781.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
 gi|329124839|gb|AEB74784.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
          Length = 236

 Score =  221 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 94/234 (40%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        D   +  + +    +  +     D+      ++       
Sbjct: 4   ILIADDEEEIIELLSLYLEKDNNII--YGAKNGLDAFEIIENNDIDLAIIDIMMPKIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR   ++P+I +S        +   + G DD + KP +  E++ARV A  RR   
Sbjct: 62  HLVKKIREKYEIPVIMLSAKSEYSDKILGLELGADDYITKPFNAMEVVARVKAQLRRYYK 121

Query: 122 SNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            ++             E G +++ +        G   PL   E +I+ YLM + G+   K
Sbjct: 122 YHSIGDIVENNNEECLEYGSLKLNNSTCTLYKDGVEIPLTSTEYKIIFYLMNSCGRVFTK 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
            QIF  ++       ++N +  HIS LR K+ N     + + + R LGY  ++N
Sbjct: 182 KQIFEYVWDEP-FYGDDNAIMVHISNLRDKIENDSKNPEYIKTIRGLGYKFNFN 234


>gi|330897339|gb|EGH28758.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 220

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G +L+     +    L +   E    +   L       L
Sbjct: 3   LLLVEDDRAIGQGIRVALNTEGYTLDWL--GDGLSALHALRSEPFDLLLLDLGLPRMDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA +  +P++ ++        +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +    +G   P+   E ++L  LM   GK V + ++ + +YG
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFKGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E  I  LRKKL      + + + R +GY ++
Sbjct: 181 WQDK-VESNTLEVLIHNLRKKL----STELIRTVRGVGYLLE 217


>gi|284041764|ref|YP_003392104.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945985|gb|ADB48729.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 226

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 94/220 (42%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++        +DG+  +     E   W+  S+  D   ++  L   G    E
Sbjct: 4   LVIEDEPKLRAAIRRGLTEDGLVCDVAERGEDALWMAGSSAYDAIVLDVMLP--GIDGFE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +RA     P++ ++   +++  +   D+G DD V KP    E+ AR+ A+ RR  V
Sbjct: 62  TCRRLRADGVWAPVLMLTARDAVEDRVAGLDTGADDYVTKPFSLAELSARLRALARRGPV 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R          L  RE  +LE  M   G+ + +  +    +G 
Sbjct: 122 QRPAVLAAGDLTLDPATRRVARGEVEIELSAREYALLEAFMRRPGEVLERHVLLDLAWGR 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D     NVV+ ++  LR+++    G + +++ R +GY +
Sbjct: 182 -DYENRSNVVDVYVRYLRERVDRPFGAEAIETLRGVGYRL 220


>gi|241766028|ref|ZP_04763947.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241363977|gb|EER59246.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 247

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G   +               + D+  ++  L   G    
Sbjct: 23  ILVVEDEPKMAALLIDYLHAAGYRADRLADGREVAAFVRGRQPDLVLLDIMLP--GRDGF 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK-PIHHREILARVAAIYRRLK 120
           E+ R +R  S VP+I ++        L   D G DD + K P   REI+ARV AI RR +
Sbjct: 81  EVCRELRGFSDVPIIMLTARADEADRLAGLDLGADDYICKTPFSPREIVARVKAILRRSR 140

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++            + + +       +G    L   E R+L  L A  G+ +++  + +
Sbjct: 141 RADASTAPEGKGAAALHIDAAAYRATFRGVALDLTPVEFRLLRSLAAVPGQVLSREVLLN 200

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            ++     AV +  V++HI  LR+KL     G +P+ +   +G+ ++
Sbjct: 201 KLHDDH-RAVTDRAVDAHIKNLRRKLEQVAPGCEPIRAVYGVGFRLE 246


>gi|238895651|ref|YP_002920386.1| DNA-binding transcriptional regulator BaeR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330010883|ref|ZP_08306922.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
 gi|238547968|dbj|BAH64319.1| two-compoent regulatory system response regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328534358|gb|EGF60966.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
          Length = 240

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G +    N  +            +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLQAAGYAPALINHGDKVLPYVRQTPPHLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +        P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRDLQALDAQSPLIVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL         + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWEAD 235


>gi|224543110|ref|ZP_03683649.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523897|gb|EEF93002.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM
           15897]
          Length = 234

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 18/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56
            +L+DD   + D        +G      N  + +  L +         D+  ++  L   
Sbjct: 6   IMLVDDEPDILDLLDKALTIEGYC----NITKIDNGLSAINTCKEINPDIIVLDVMLPD- 60

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                E+ + IR  S  P++ +S        +     G DD V KP   +EI  RV A  
Sbjct: 61  -IDGYEVCKKIREISHCPILFLSSKNDELDKILGLAVGGDDYVTKPFSPKEIAYRVKAQL 119

Query: 117 RRLKVSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR +   N         G + + +DG       +   L  RE  IL+YL  N G+ +++ 
Sbjct: 120 RRAEYKYNPKQDFSVRIGELMIDADGCRVMKNNKEIELTAREFEILQYLAQNVGRVISRE 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +++  ++G  D    +N +  HI  LR+KL +       + + + LGY +
Sbjct: 180 RLYETVWGE-DSFGCDNTIMVHIRHLREKLEDNPTAPQYIITMKGLGYKL 228


>gi|7144547|gb|AAA62132.2| orf246; ompR homolog [Rhodella violacea]
          Length = 247

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++   ++ + EE L    +E  + I   ++       
Sbjct: 13  ILIVDDEASMRRLLEYRLSIIGYNV--ISASDGEEALNIFRKEHPNLIVLDIMMPKLDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + IR  S +P+I ++    +   +   + G DD + KP   +E+ AR+ ++ RR   
Sbjct: 71  GVCQEIRKESDIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVLRRSDR 130

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++   + G + + ++ R      E   L   E  +LE L++  G   ++  I
Sbjct: 131 MTVNSNIPTSGINQIGFLTIDTNRRQVYKNNERVRLTGIEFCLLELLISRAGSPFSRAVI 190

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
              ++G   +  ++  VV+ HIS+LR KL +     D + + R  GY
Sbjct: 191 LQKVWGYTPERHIDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGY 237


>gi|213971813|ref|ZP_03399916.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas syringae pv. tomato T1]
 gi|301382522|ref|ZP_07230940.1| transcriptional activator CopR [Pseudomonas syringae pv. tomato
           Max13]
 gi|213923428|gb|EEB57020.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas syringae pv. tomato T1]
          Length = 227

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D             + G +++    L   E L  +  E    +   ++  G    
Sbjct: 3   ILVAEDEPKTGMYLQQGLLEAGFNVD--RVLTGTEALHQALNESYDLLILDVMMPGIDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA  S VP++ ++    +   +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  DVIQSVRAAGSLVPVLFLTARDGVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + N    + G + V    R     G+   L  +E  +LE LM  RG+ ++K+ I S ++
Sbjct: 121 GAPNLTSIKIGDLEVDLLKRRASRSGQRIDLTAKEFALLELLMRRRGEVLSKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY +D
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKIDDDFDTKLIQTSRGMGYMLD 222


>gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 223

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 223


>gi|150021690|ref|YP_001307044.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149794211|gb|ABR31659.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 222

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D        +G  ++   +        S  R D+  ++  L   G    
Sbjct: 4   ILIVEDDETLRDLLKRYIKSEGYEVDEAENNFEMRKKLSKERYDLVLLDIMLPD-GLSTD 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ELP I   + ++ +I +S   +    +   + G DD V KP + RE++AR+ A +RR+  
Sbjct: 63  ELPEIKVLYPKLGIIIVSAKDNDSDKIYGLEIGADDYVTKPFNPREVVARIKAFFRRISG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G +++F D    ++  ++     +E  IL  L  N     ++ +I   ++   
Sbjct: 123 EREVIKFGQLQIFCDDYLVKLNDKIIDFTAKEFEILCLLAKNPNVVFSRERILDIVWK-- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE + + VV+ HIS +R KL    G D + + R +GY  +
Sbjct: 181 DEFISDRVVDVHISNIRNKL----GKDSIITVRGVGYKFN 216


>gi|146301142|ref|YP_001195733.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146155560|gb|ABQ06414.1| two-component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 224

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 102/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +       F ++   +      +    +  +   DV  ++  L       +
Sbjct: 3   LLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPD--INGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA    VP++ ++   + +  +   +SG DD + KP    E+ ARV A++RR  
Sbjct: 61  EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              ++ +    G + +    +  +  GE   L  +E ++L YL  N G+ V++ QI   +
Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + +  +  NVV+ +I+ LRKK+        + + + LGY I
Sbjct: 181 WDI-NFDMNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVI 222


>gi|2598275|emb|CAA73687.1| FeuP protein [Brucella suis 1330]
          Length = 229

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQ--MDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +  R  R+   +P++ ++        +   D+G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYITKPFHIEEVLARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+ + +      + G V  L   E R+L Y+M N  + V++T++   +Y 
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVVLKLTSHEYRLLSYMMNNMDEVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R +GY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGMGYRM 216


>gi|49480229|ref|YP_034909.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331785|gb|AAT62431.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 225

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPT--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|223935938|ref|ZP_03627853.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895539|gb|EEF61985.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 224

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D              +  +++  +       L S+   D   ++  L   G   L
Sbjct: 3   ILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLP--GRDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P++ +S    +   ++  ++G DD + KP    E++ARV +I RR  
Sbjct: 61  SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   +   + + +  R  +  G  F L  RE R+LE+LM   G+   +  I   ++ 
Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N+V+ +I +LR+K+        + + R +GY +
Sbjct: 181 -YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVM 220


>gi|148271879|ref|YP_001221440.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829809|emb|CAN00728.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 222

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++   ++    +   + G  S    E        D+  ++  L   G   ++
Sbjct: 8   LVVEDDAAIRAAVVSTLTAERFVVRGLASGVDLEEEVKGFLPDLVVLDWMLP--GPSGIQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR  S   +I ++   +++  L  F  GVDD + KP    E++ARV A+ RR    
Sbjct: 66  LAERIRRWSDASVIMLTARDAVEDRLRGFGQGVDDYIVKPFALAELVARVGAVLRRRGRL 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  E G + V  D       GE   L   E ++L YL A+RG+ ++KTQ+ + ++G   
Sbjct: 126 ASVVEIGDLLVDPDSGLARRGGEQLELTSIEFQLLAYLAAHRGRTLSKTQLLTQVWGY-- 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  + N+VE HIS LRKK+  + G   + + R LGY ++
Sbjct: 184 DQTDPNLVEVHISALRKKMEAR-GPRLLHTVRGLGYRVE 221


>gi|56540659|gb|AAV92783.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L R+ +    +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +        + G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELAVGNLTLNMGRHQAWMDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYML 216


>gi|326794734|ref|YP_004312554.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326545498|gb|ADZ90718.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 225

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +   A     G         +       S + D+  ++  L   G   +E
Sbjct: 5   LIVEDEPKLAELMSAYLEQAGYEHHHLERGDIVVDYVKSNQVDLILLDLMLP--GLDGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S +P+I ++        L   + G DD V KP   RE++ARV A  RR+++ 
Sbjct: 63  VCKQVRQFSGIPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREVVARVKANLRRVELD 122

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    +T    + +D      +GE+  L   E ++L+ L+   G+   +  I  +IY   
Sbjct: 123 HIESPKTDGFDLDADRLRATYKGELIDLTTVEFQLLQLLIKEPGRVFGRDLIMKSIY-SD 181

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
              V +  ++SHI KLRKK+       + + S    GY  + N
Sbjct: 182 SRVVSDRTIDSHIKKLRKKISAVAPELNVIHSVYGAGYRFENN 224


>gi|302527275|ref|ZP_07279617.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302436170|gb|EFL07986.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 226

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D AL+ +       D G ++    S E    +  S   DV  ++  L   G   L 
Sbjct: 6   LLVEDDALISEALSLALADQGCAVTQAASGEDALAMLESVSVDVVLLDLMLP--GMDGLS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121
           +   +R    +P+I I+     Q  +   ++G DD V KP+   E+ AR+ A+ RR   V
Sbjct: 64  VCHELRVRGDLPVIIITARADSQDVIAGLEAGADDYVTKPLVAGELAARIRALLRRAAPV 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + G + + +        G    L R E R+L  L A  G+ V + Q+   I+G  
Sbjct: 124 RRCCLQVGDLLLSTHDETVSRHGVQILLTRTEFRLLAELAAAEGEVVTREQLLHRIWGR- 182

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           D      +++ HI +LR+K+  +      V + R +GY 
Sbjct: 183 DYFGGTRLLDVHIRRLRRKVEPDPDCPRLVLTVRGIGYR 221


>gi|196228884|ref|ZP_03127750.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227165|gb|EDY21669.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 229

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++  G    F  +G  ++  N  +    L  + +  +  ++  L        
Sbjct: 7   ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKV--NGY 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R    ++P+I ++        +     G DD V KP   +E+LARV A  RR +
Sbjct: 65  EICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQR 124

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G  R  +  R     G+  PL  +E  +L +L+ N G+ +++ +I S ++G
Sbjct: 125 KQTGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
            +D  V    ++  ++ LR K+        +  + R  GY  +
Sbjct: 185 -YDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226


>gi|152983575|ref|YP_001347907.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150958733|gb|ABR80758.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 223

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++            +S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLASLGRQGYAVDWLADGRDAALQGASEPYDLIILDLGLP--GRPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  R      P++ ++   S    +D   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EILREWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + ++ E   + +    +   + G    L   E R+L Y M + G+ ++K  +   +Y
Sbjct: 121 GLANQSQLEAAGLSLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              +   + NV+E H++ LR+KL    G + ++++R  GY 
Sbjct: 181 DG-ETERDSNVIEVHVNHLRRKL----GREVIETRRGQGYR 216


>gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi]
          Length = 242

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +E   +         + R D   ++  +   G     
Sbjct: 20  LIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMP--GMDGFG 77

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 78  MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGH 137

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S++    R     + +  D R+    GE   L   E  +L Y M N G  ++K +I   +
Sbjct: 138 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHV 197

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 198 WN-YDFGGEVGVVESYVSYLRRKI-DTTEPRLIHTLRGVGYVM 238


>gi|90961498|ref|YP_535414.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820692|gb|ABD99331.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 228

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +    E   +    + L+ +  ED  AI   L+      L
Sbjct: 4   ILIIEDEKNLSRFVELELQHEEYETEVCKNGR--QGLELALDEDWDAILLDLMLPELNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+++
Sbjct: 62  DICRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVEL 121

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N +            + +  + R      E+  L +RE  +L  LM N    +A+  + 
Sbjct: 122 ENEQNGNKQTTLTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDTLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G ++  +E NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 KKVWG-YETQIETNVVDVYIRYLRNKIDRPGEDSYIQTVRGTGYVM 226


>gi|294339068|emb|CAZ87417.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
          Length = 240

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A    +G+ +      +  E    +AR D+  ++  L   G+  L
Sbjct: 7   ILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLMLP--GDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P++ ++        +   + G DD + KP   RE+LAR+  I RR + 
Sbjct: 65  TLCRQLRAKSDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRARS 124

Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                +   +R                    G V  L   E R+L   +++  + + + Q
Sbjct: 125 LPVNLQPEDLREAHFAGWTLNTLHRHLISPAGVVVTLSGAEYRLLRIFLSHPNRVLNRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +     G   + ++   ++  +S+LR++L +       + + R +GY +
Sbjct: 185 LVDLTQGREADPLD-RSIDVQVSRLRQRLGDDPRDPVLIKTVRGMGYVL 232


>gi|289626740|ref|ZP_06459694.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289648659|ref|ZP_06480002.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487563|ref|ZP_07005605.1| Two-component system response regulator QseB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298157947|gb|EFH99025.1| Two-component system response regulator QseB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|330870522|gb|EGH05231.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 222

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++         +  ++   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLP--GMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R      P++ ++   S    ++   SG DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWSERIEGLKSGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+KL    G   V+++R  GY
Sbjct: 181 DGENE-RDSNVIEVHVNHLRRKL----GRAVVETRRGQGY 215


>gi|291438629|ref|ZP_06578019.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341524|gb|EFE68480.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 268

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +      +         R D   ++  L       L 
Sbjct: 46  LVVDDEQSITELLSMALRYEGWQIHSEGDGQGALRAARELRPDAVVLDMMLPD--MDGLS 103

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   S++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 104 VLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSGA 163

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R       G + +  D  +    GE   L   E  +L +LM N  + ++K QI   +
Sbjct: 164 ADRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 224 W-SYDFGGHANVVELYISYLRKKI-DAGREPMIHTRRGAGYMI 264


>gi|323341209|ref|ZP_08081456.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091403|gb|EFZ34028.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 243

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 93/233 (39%), Gaps = 18/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED--VSAIEAFLIGKGEK 59
            ++++D + +++G   L   +   +     +E E  +      D  +  +   ++     
Sbjct: 11  ILVVEDDSDIREGVRILLESEEYEV-----IEAENGVVGLKLLDETIDLVILDIMMPKLN 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L++   IR  S VP++ ++        L     G DD + KP  + E+L RV A+ RR 
Sbjct: 66  GLKVCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRRY 125

Query: 120 KVSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +V   +           E G I++ +   +    G    +   E +IL  +M + GK  +
Sbjct: 126 QVYQGKSTNENEAEKIIEIGSIKLNTAFNEIVADGNKVEVSDLEYKILRLMMQHPGKIFS 185

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              I+ +++         N V  HI KLR K+  +      + +    GY  +
Sbjct: 186 TQNIYESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRFE 238


>gi|38639718|ref|NP_943487.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae]
 gi|168998689|ref|YP_001687957.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|38016816|gb|AAR07837.1| SilR [Klebsiella pneumoniae]
 gi|238549704|dbj|BAH66055.1| silver resistance two-component system response regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 226

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++     + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TMITESQFRVADLSMDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  + +LR K+ N  G   + + R +GY ++
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYILE 222


>gi|324006395|gb|EGB75614.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2]
          Length = 227

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 TVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|326792918|ref|YP_004310739.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543682|gb|ADZ85541.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 232

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++ DD  L+ +  +     +G  +L+ +N +E    L++  +++V  I   ++      L
Sbjct: 6   LVCDDDKLIVNSIVLHLQKEGYRTLKAYNGVEA---LEAIEKQEVHLILMDIMMPQLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR    +P+I +S        +   + G DD + KP +  E+LARV +  RR   
Sbjct: 63  SATLKIRQEKNIPIIILSAKSEDTDKIAGLNLGADDYITKPFNTFELLARVRSQLRRYTK 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +     TG + + +      V GE+  L   E +IL+YLM N G+ ++  QI+ 
Sbjct: 123 LGAMQQTPQLLMTGGLCMDTGANTVYVDGELVRLTPTEYKILQYLMINMGQVLSMHQIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++     A E N V  HI +LR+K+  N      +      GY ++
Sbjct: 183 NVWHDTPFAPE-NTVAVHIRRLREKIEINPKEPKYIKVVWGSGYLVE 228


>gi|295705391|ref|YP_003598466.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294803050|gb|ADF40116.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 224

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   ++         +G  +      E    L +     ++ ++  +  K     
Sbjct: 4   ILLADDDEHMRQLVRHYLQLEGYVVHEAKDGEEASGLLAKQHIHLAVVDIMMPHK--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR++   P+I ++    L+     F +G DD V KP   +E++ R+ A+ RR +V
Sbjct: 62  EVCEEIRSYYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLRRYEV 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N +        +     +    G +  LP +E  +L  L +  G+   + ++   I+G 
Sbjct: 122 VNEKMIVLNNTSIDRKSYEVHCSGRLLILPMKEFELLAQLASYPGRIFTREELIHLIWGA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D   +   ++ H+ +LR++  +   F  + + R +GY ++ 
Sbjct: 182 -DFNGDNRTIDVHVKRLRERFEHTDDF-VITTVRGVGYKLEV 221


>gi|325680084|ref|ZP_08159651.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
 gi|324108247|gb|EGC02496.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
          Length = 223

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   V       F  +G  +  F +    E + Q+S + D+  ++  +       
Sbjct: 4   ILIADDEPDVVSLVKDYFELNGYLV--FTAKNGSEAIKQASRQPDIILLDINMPEA--DG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR +   P++ ++        +  F +G DD + KP    E+ AR+AA  RR  
Sbjct: 60  IEVCRRIRDYVPCPIVFLTARIEDSDKVSGFAAGGDDYIIKPFSLEELGARIAAHIRREN 119

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S    +    G + V          GE   L ++E +ILE L  N G+  +K +I+  +
Sbjct: 120 RSAAKRDVLLCGSLSVDYGNMTVSSGGEEINLAKKEFQILELLSRNTGQVYSKERIYEKV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  +D   + +VV  HI +LR KL        +++   +GY 
Sbjct: 180 W-SYDAEGDSSVVAEHIRRLRSKLSKYGEGSHIETVWGMGYK 220


>gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
 gi|302477398|gb|EFL40491.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
          Length = 249

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +      +         R D   ++  L       L 
Sbjct: 26  LVVDDEQSITELLSMALRYEGWQIRSAGDGQGALRTAREFRPDAVVLDMMLPD--MDGLA 83

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 84  ILGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 143

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R+E     G + +  D  +    G+   L   E  +L +LM N  + ++K QI   +
Sbjct: 144 ADRRSESMLVVGDLTLDEDSHEVTRGGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRV 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 204 W-SYDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 244


>gi|255971801|ref|ZP_05422387.1| two-component system response regulator [Enterococcus faecalis T1]
 gi|256958081|ref|ZP_05562252.1| two-component system response regulator [Enterococcus faecalis DS5]
 gi|256963908|ref|ZP_05568079.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|257079968|ref|ZP_05574329.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|257417030|ref|ZP_05594024.1| two-component system response regulator [Enterococcus faecalis
           AR01/DG]
 gi|294779527|ref|ZP_06744922.1| regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|300861078|ref|ZP_07107165.1| putative Response regulator SaeR [Enterococcus faecalis TUSoD Ef11]
 gi|307268332|ref|ZP_07549713.1| regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|307272098|ref|ZP_07553361.1| regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|307276158|ref|ZP_07557289.1| regulatory protein VanR [Enterococcus faecalis TX2134]
 gi|307286853|ref|ZP_07566935.1| regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|312951112|ref|ZP_07770017.1| regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|255962819|gb|EET95295.1| two-component system response regulator [Enterococcus faecalis T1]
 gi|256948577|gb|EEU65209.1| two-component system response regulator [Enterococcus faecalis DS5]
 gi|256954404|gb|EEU71036.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|256987998|gb|EEU75300.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|257158858|gb|EEU88818.1| two-component system response regulator [Enterococcus faecalis
           ARO1/DG]
 gi|294453406|gb|EFG21813.1| regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|295113733|emb|CBL32370.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300850117|gb|EFK77867.1| putative Response regulator SaeR [Enterococcus faecalis TUSoD Ef11]
 gi|306502068|gb|EFM71354.1| regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|306507152|gb|EFM76291.1| regulatory protein VanR [Enterococcus faecalis TX2134]
 gi|306511214|gb|EFM80221.1| regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|306515358|gb|EFM83892.1| regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|310630888|gb|EFQ14171.1| regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|315036301|gb|EFT48233.1| regulatory protein VanR [Enterococcus faecalis TX0027]
 gi|315154148|gb|EFT98164.1| regulatory protein VanR [Enterococcus faecalis TX0031]
 gi|315158989|gb|EFU03006.1| regulatory protein VanR [Enterococcus faecalis TX0312]
 gi|315166289|gb|EFU10306.1| regulatory protein VanR [Enterococcus faecalis TX1302]
 gi|315171873|gb|EFU15890.1| regulatory protein VanR [Enterococcus faecalis TX1342]
 gi|323481725|gb|ADX81164.1| response regulator vanRG [Enterococcus faecalis 62]
 gi|327536016|gb|AEA94850.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 234

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        DG  +E F   +      ++ + D++ ++  L        
Sbjct: 5   ILLVDDEQEIADLLEVYLTSDGYEVEKFYRGKPALESMANNQFDLAVLDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +  R     P+I ++        +     G DD + KP +  E++AR+    RR + 
Sbjct: 63  QMVKKAREKYFFPIILLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFRK 122

Query: 122 SNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N++            +   + +       ++ GE   L   E  IL YL   +G+ V  
Sbjct: 123 YNSQASLQQETEGTEIDIHGLVINKIHHTSKLYGEDIFLTPLEFSILWYLAERQGEVVPA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +F  I+G        N V +HI +LR+KL+        + +   +GY ID
Sbjct: 183 EILFEEIWGEKYLENNGNTVMAHIGRLREKLKEPPRKPKFIKTVWGVGYKID 234


>gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 241

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 21  ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEGPDVLILDVMLPDT--DG 76

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 77  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 136

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 137 KKTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 196

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL N    + + +   +GY +D 
Sbjct: 197 EKVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLDC 241


>gi|1408184|gb|AAB03659.1| two component response regulator [Mycobacterium tuberculosis str.
           Erdman]
          Length = 234

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++                 D   ++  L   G    
Sbjct: 6   ILVVEDEPKMTALLARALTEEGHTVDTVADGRHTVASVDGGDYDAVVLDVMLP--GIDGF 63

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+  R+ R     P++ ++   +    +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 64  EVCARLRRQRVWTPVLMLTARGAFTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 123

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G +R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 124 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              EA   N+V+ +I  LR K+    G   +++ R  GY +
Sbjct: 184 AAYEAR-SNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 223


>gi|163943206|ref|YP_001642436.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865403|gb|ABY46461.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           ++E  +         +    D+  ++  +        
Sbjct: 6   ILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVMMPN--LNGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ ++IR+ S VP+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 64  EVAKMIRSQSNVPVIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSND 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  +N      +RV  D     V      L  +E  IL+ L+ N  + + +  I   ++G
Sbjct: 124 KSLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNEKRVLPRESIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E  ++++H+  +RKKL        + + + +GY ID
Sbjct: 184 -YDYIGESRIIDTHMKNIRKKLD----IPYIKTIKGIGYKID 220


>gi|325262670|ref|ZP_08129406.1| regulatory protein VanR [Clostridium sp. D5]
 gi|324031764|gb|EGB93043.1| regulatory protein VanR [Clostridium sp. D5]
          Length = 238

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D       ++  ++ + ++S E  E +      D++ ++  +       
Sbjct: 12  ILIVDDEKEIADLVECYLQNEDFTIFKYYDSREAWECIVR-EEPDLALMDVMMPE--IDG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L R IR     P+I ++        +     G DD + KP    E++ARV A  RR K
Sbjct: 69  FTLCRQIRERYHFPVIMLTAKGEEIDKITGLTLGADDYIAKPFLPLEMVARVKAQLRRYK 128

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N  +E          + +        +  E   L   E  IL  L  NRG+ V+   +
Sbjct: 129 RYNQASERDDSVILVSGLMLNVKTHKCTLNEEALSLTPTEFDILRILCENRGEVVSAESL 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           F  I+         N V  HI  LR+K+++       + +    GY I+
Sbjct: 189 FRQIWADEYYVKNNNTVTVHIRHLREKMKDSFENPRYIKTVWGCGYKIE 237


>gi|317402962|gb|EFV83502.1| winged helix family Two component transcriptional regulator
           [Achromobacter xylosoxidans C54]
          Length = 219

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +     +  +++        E    +   D+  ++  L  +    L
Sbjct: 3   ILLVEDDTMIGESVLDCLRAEHYAVDWVKDGHAAELALRTDPYDLVLLDLGLPRR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L R +RA     P++  +   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TLLRELRARKDRTPVLIATARDAVSDRIAGLDAGADDYIVKPYDVDELLARMRALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +        V G   PL  RE  +LE L+A  G   ++ Q+   +Y 
Sbjct: 121 GRAEPVFEHDGITIDPQSHAATVDGTPVPLTAREWAVLEPLIARPGMIFSRAQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V  N VE +I  LRKKL    G + + + R +GY I
Sbjct: 181 WKDS-VSSNAVEVYIHGLRKKL----GQNLIQNVRGVGYVI 216


>gi|315655993|ref|ZP_07908891.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315490057|gb|EFU79684.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
          Length = 257

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +              +  + +      +   +   L+  G   +
Sbjct: 35  ILVVDDDQALSEMIGIILESSAYEPSF--CADGAKAVDKFREVEPDLLLLDLMLPGMDGI 92

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        +   ++G DD + KP   +E+LARVAA  R L  
Sbjct: 93  EICRRIREFSNVPIIMLTAKSDTTDVVAGLEAGADDYIPKPFKPKELLARVAARLRNLDA 152

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  +  +   + +     +   +G+   L   E  +L  L    G+  ++ ++   ++GL
Sbjct: 153 AEHDVLKAAGVEINLASHEVSREGKPLNLTPLEYDLLVALATKPGRVFSREELLEQVWGL 212

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              A +  +V  H+ +LR K+  +      V + R +GY I
Sbjct: 213 R-HASDTRLVNVHVQRLRAKVELDPDNPTVVLTVRGVGYRI 252


>gi|262040109|ref|ZP_06013362.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042462|gb|EEW43480.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 240

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G +    N  +            +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLQAAGYAPALINHGDKVLPYVRQTPPHLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +        P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRDLQAMDAQSPLIVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL         + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWEAD 235


>gi|225159323|ref|ZP_03725621.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224802077|gb|EEG20351.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 263

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 102/229 (44%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            ++++D         A    +G  +   ++    +   ++    +  D+  ++  L   G
Sbjct: 6   ILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASLAAHPSESPADLVILDWMLP--G 63

Query: 58  EKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              + L R +RA  Q +P++ ++   ++   +   ++G DD + KP    E+LARV A+ 
Sbjct: 64  IDGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVRALL 123

Query: 117 RRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           RR        +     + +  + R     G    L  RE  +L YL  ++G+ V++ Q+ 
Sbjct: 124 RRFTTPREPWQRSVADLAINLETRLVTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQLA 183

Query: 175 SAIYGLFDEAVE-ENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSI 220
             I+   + A   +NV++ HI++LR+K+          + + R LGY +
Sbjct: 184 REIWRENNRATPIDNVIDVHIARLRRKIDEASPGAEKLLHTLRGLGYML 232


>gi|168179635|ref|ZP_02614299.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182669357|gb|EDT81333.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 229

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G S+    +    E ++   + D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFMKDYFEDQGYSV--ITASNGREAIEYCDK-DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QVCQNIRDKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + ++   G + +  + R    + +   L  +E  I+E L  +  +  +K QI+  I
Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
           +G +D   + N V  HI K+R K ++     + + +   +GY  + N
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEIN 227


>gi|56476059|ref|YP_157648.1| two-component response regulatory protein [Aromatoleum aromaticum
           EbN1]
 gi|56312102|emb|CAI06747.1| Two-component response regulatory protein [Aromatoleum aromaticum
           EbN1]
          Length = 228

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  ++ +G        G +++   S    +   ++   D+  ++  L       +
Sbjct: 3   ILLAEDDQVIANGLGRALKRSGYAVDHVASGSEADTALATQTYDLLILDLGLP--KLPGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA  S +P++ ++    ++  +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVLKRLRARKSALPVLILTAQDGVEERVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G +      R  ++ G+V  L  RE  +LE      G+ V+K QI   + G 
Sbjct: 121 GQPRCIEIGSLSYDQADRVAKINGQVVELSAREVGLLEVFALRVGRLVSKDQIVDHLCG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E V  N +E ++ +LRKKL +      + + R LGY ++
Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEDSG--VRIVTVRGLGYCLE 218


>gi|324324610|gb|ADY19870.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +   D   ++   + E   +L      D   ++  +        
Sbjct: 3   LLVVEDNASLLESIVEIL-HDEFEVDTALNGEEGLFLALQNIYDAILLDVMMPE--MDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|256004559|ref|ZP_05429537.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417251|ref|ZP_06248271.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255991431|gb|EEU01535.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281408653|gb|EFB38911.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316940723|gb|ADU74757.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 223

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 91/220 (41%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  ++               + D+  ++  L        
Sbjct: 4   ILIVEDDKDIVNNLTEYLRDEGFDVDSAGGQNEAINKMDKNKYDLLLVDISLKD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +    R ++ +P+I +S        +   + G DD + KP   RE+L+R+    RR   
Sbjct: 62  AVCSAARENNDIPVIFLSASDDEYNIVTGLEIGADDYIVKPFRPRELLSRIRKALRRNGK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    E   IRV +        G    L   E R+L   + N+G  ++++++   I+ + 
Sbjct: 122 AGAVIEHDNIRVDTVRGIVTKNGSEIFLSALEYRLLLVFLNNKGAVLSRSRLLEEIWNIA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ +       + + R LGY +
Sbjct: 182 GEYVNDNTLTVYIKRLREKIEDDPQNPTFIKTVRGLGYKV 221


>gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 227

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  +E       EE L++    D   +   ++  G   +E
Sbjct: 7   LIIEDEEKIARFLELELEHEGYEVEA--VYNGEEGLEAIIEGDFDLVLLDIMLPGLSGME 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S++P+I ++        +   D G  D + KP    E+LAR+  + RR K  
Sbjct: 65  ICRRVRKESEIPIIMLTAKDDTTDKVMGLDLGAHDYITKPFAIEELLARMRGVLRRNKRD 124

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++      + +  + R+  V  EV  L ++E  +L YL+ N+G  +++ QI   ++G
Sbjct: 125 AGMDSILRVKNLVLNQETREVRVNDEVVELTKKEYNLLLYLLKNKGIVLSREQIIEDVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + N+V+ +I  LR K+ ++     +++ R +GY I
Sbjct: 185 -YDYPGDTNIVDVYIRYLRSKIDDECKETYIETVRGVGYVI 224


>gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
 gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
          Length = 237

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +    +      L      D++ ++  L        
Sbjct: 6   ILVVDDEKTITDLVGIYLRNEGYDVTLAYTGADAARLILEQEFDLAVLDIMLPDV--DGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR     P+I ++   S    ++    G DD + KP    E++AR  A  RR   
Sbjct: 64  ELLRTIRTERTYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRRYTS 123

Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
              R +               + +  D R   V  +       E  IL YL  +RG  V 
Sbjct: 124 YGTREQSVAAEDAGPIIAFNGLSINKDARTVTVDEKPVRCTPLEYSILLYLAEHRGCVVP 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++F A++     A   N V  HI  LR+KL  +      + +   +GY+I+
Sbjct: 184 VEELFRAVWDEEFMAGSNNTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTIE 236


>gi|158321721|ref|YP_001514228.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141920|gb|ABW20232.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +   ++  F +    E L+    E++  +   ++       
Sbjct: 4   ILVVDDEKEITDAIEVYLKNQNYNV--FKAYNGIEALEVFREEEIHLVLIDIMMPRLDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +    IR  S VP+I +S        +   + G DD + KP +  E+LARV +  RR   
Sbjct: 62  KTTIKIRETSSVPIIFLSAKSEDMDKILGLNIGADDYITKPFNPMELLARVNSNLRRYTN 121

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  V  N  + G I +  D ++  V G+   +   E RIL  LM+N  +  +  +I
Sbjct: 122 YANNNTPVKENMIKIGGIELKDDSKELIVDGKSIKITPLEYRILYLLMSNPNRVFSIEEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++       +   V  HI ++R+K+  N      +     +GY  +
Sbjct: 182 YEKVWKEPAYNPD--TVTVHIRRIREKIEINPGEPRYLKVVWGVGYKFE 228


>gi|134291089|ref|YP_001114858.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134278|gb|ABO58603.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 226

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V         + G  ++  ++      L      D   ++  L G G   L
Sbjct: 3   ILLVEDNQQVAGFLKKGLLETGHVVDWADNGRDGMALAIGESYDAIVLDRMLPG-GIDGL 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +RA  S+VP++ +S    +   +    +G DD V KP    E++AR+ A+ RR +
Sbjct: 62  KIVAALRAAGSKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRSQ 121

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +   +   + +    R     G+   L  RE ++LEYLM +  + V +T +   I+
Sbjct: 122 DNGFDTALKLADLSIDLLSRKVTRAGKPIVLKPREFKLLEYLMRHAEQVVTRTMLLENIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+SKLR+K+        + + R  GY +
Sbjct: 182 -EYHFDPQTNVIDVHVSKLRQKIDTGFDRSLLRTIRNAGYML 222


>gi|187478610|ref|YP_786634.1| two-component response regulator [Bordetella avium 197N]
 gi|115423196|emb|CAJ49727.1| two-component response regulator [Bordetella avium 197N]
          Length = 223

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +         D G +++     +  +   +    ++  ++  L   G+  LE
Sbjct: 4   LVIEDDTTLGHALQEFLSDQGYAVDWLTEGDKVQGALAGQPYELLLLDLNLP--GQSGLE 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           + R +R   +QVP++ ++    L   +   D+G DD V KP    E+ ARV A+  RR  
Sbjct: 62  VLRQLRQEGNQVPVLILTARDGLDDRVAGLDAGADDYVTKPFDLPELAARVRALGRRRTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    E GP+   + GR+  V G+   L  RE  +LE LMA  G+ + K QI +++   
Sbjct: 122 QAQPLIEVGPLVFDTVGREVRVNGQRLSLSVRELSVLEMLMARVGRVITKRQIVNSL-SA 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    EN VE ++ +LRK+L        + + R  GY +D 
Sbjct: 181 WDADFSENAVEVYVYRLRKRLEGTGAS--IQTVRGFGYMLDV 220


>gi|299069814|emb|CBJ41094.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CMR15]
          Length = 226

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A V D        +G  +    +    E LQ +   + + +   L+  G   L
Sbjct: 3   ILVIEDDARVSDFLSRGLRAEGYRV--LLARTGPEGLQLARGGEPALLLLDLMLPGMSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA  + VP++ ++    +   +     G DD + KP    E+LAR+ A+ RR +
Sbjct: 61  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N  +   + +  +       G+   L  +E   LE LM+  G+  ++ +I S +
Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRERILSNV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  ++ +  N+V+ ++ +LR K+        + + R LGY +D
Sbjct: 181 WGANEDPL-TNIVDVYVRRLRSKIDEGQPVPLLKTVRGLGYRLD 223


>gi|255526633|ref|ZP_05393539.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186093|ref|ZP_06854498.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509666|gb|EET86000.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049361|gb|EFG88790.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 227

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 103/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A    +G  +    +      L  S   ++  ++  L     +  
Sbjct: 4   ILIVEDEEKISNVQKAYLEKEGYEVYTSTTGLKALELFDSIEFNLIILDLMLPD--IQGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR  S V +  ++   +L+  ++  ++G D+ + KP   RE++ARV +++RRL  
Sbjct: 62  EICKIIRNKSDVYIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLVS 121

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +N+     + G + +  D R  +V+G    L   E  IL  L  N+GK + + Q+   ++
Sbjct: 122 NNSSILCFDNGNLEIHKDSRIVKVKGLEVSLTPNEFDILYSLAMNKGKVLTREQLIDRVF 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G+ D    +  V+ HI  +RKK+         + +   LGY  
Sbjct: 182 GM-DFEGFDRTVDVHIKNIRKKIEEDSKNPKYILTVTKLGYKF 223


>gi|225570827|ref|ZP_03779850.1| hypothetical protein CLOHYLEM_06930 [Clostridium hylemonae DSM
           15053]
 gi|225160289|gb|EEG72908.1| hypothetical protein CLOHYLEM_06930 [Clostridium hylemonae DSM
           15053]
          Length = 234

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D        D    ++  ++      +      DV  ++  L       
Sbjct: 5   ILLVDDEKDIVDLLEETLRKDAAYEIKKAHTGAEALSMCREFHPDVIILDIMLPD--IDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R IR  S   ++ +S        +     G DD + KP   RE+  RV A  RR K
Sbjct: 63  LEICRQIRGFSYCSILFLSSRDDDIDKILGLSGGGDDYITKPFSPREVAFRVKAQLRRQK 122

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             ++           G + + S+       GE   L  RE  +L Y+  N G+ ++K ++
Sbjct: 123 YQHSIPPQQEKLLPAGGLTIDSESCRVCKNGEEIELTGREFLLLSYMAENAGRIISKERL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +  ++G +  ++ +N +  HI  +R+K+ +     + + + + LGY +
Sbjct: 183 YEQVWGEY-SSICDNTIMVHIRHIREKIEDNPSEPELLVTVKGLGYKL 229


>gi|170722475|ref|YP_001750163.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760478|gb|ACA73794.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 220

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +L+                 D+  ++  L       +
Sbjct: 3   LLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPR--MDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +RA    +P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELLRRVRAGGDSLPVLILTARDALDDRITGLDAGADDYLVKPFDLNELKARLRALLRRSA 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   + +    +     G    L  +E  +L  L+A  GK   + ++   +YG
Sbjct: 121 GRAKVLIEHAGVSLDPATQQVHYHGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +DE  E N +E +I  LRKKL N L    + + R +GY ++
Sbjct: 181 -WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217


>gi|51891869|ref|YP_074560.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855558|dbj|BAD39716.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 231

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD              +G ++   +  +    L  S R D+  ++  +        
Sbjct: 7   ILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKV--DGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   IRA S VP++ ++        +  F  G DD V KP    E++ RV AI RR+  
Sbjct: 65  AVCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPT 124

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + +    R   V      L  RE  +L  + ++ G    +  + + ++ 
Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVW- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             D   +++ V   I +LR+K+ +       + +   +GY  D
Sbjct: 184 HGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFD 226


>gi|116619216|ref|YP_821372.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222378|gb|ABJ81087.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 228

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++    A     G S E   +   E+ L++   E  + +   +   G   L
Sbjct: 6   ILVVDDDPQIRRVMKATLV--GHSYEVIEARTGEDALEALPHEMPNLVLLDMNMPGMGGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR+ + +P+I +S   + +  +   D+G DD V KP    E+LAR+ A  RR   
Sbjct: 64  ETCRAIRSGTDIPVIILSVRNTEKDKVAALDAGADDYVTKPFGIEELLARIRAALRRSPS 123

Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +    G     + +  D R     G+   L  +E  +L YL+A+ G+ V   ++  A+
Sbjct: 124 GPDGGPHGFTASNLEIDFDARRVHANGKDVRLTPKEFEMLRYLVAHSGRPVTHRELLQAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G  D   E   +   I++LRKK+  N      + ++ ++GY  
Sbjct: 184 WGP-DYGDEPEYLRVFINQLRKKIEANPSKPKFILTEPWVGYRF 226


>gi|315644225|ref|ZP_07897395.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280600|gb|EFU43889.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 243

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 40/243 (16%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-------- 53
            +++DD   + D        +G  +               A + +SA+E  L        
Sbjct: 5   ILVVDDEQPIADILKFNLEKEGYDV-------------ICAFDGISAVEIALTKRPDLML 51

Query: 54  ---IGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109
              +  G+  +++ R +RA + Q+P+I ++        +   + G DD V KP   REIL
Sbjct: 52  LDLMLPGKDGMDVCREVRAANLQIPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTREIL 111

Query: 110 ARVAAIYRRLKVSNNRAETGP-------------IRVFSDGRDPEVQGEVFPLPRRERRI 156
           ARV A  RR +  +N A+                + + +D       GE   L  RE  +
Sbjct: 112 ARVKAQMRRQQKPDNSADNTGGTSAGGQGLRLFELFIDTDMYMVYKSGEALDLTHREYEL 171

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRF 215
           + YL  N GK + +  +  A++G F+   +   V+  I +LR+K+       + + ++R 
Sbjct: 172 VYYLARNAGKVMTREHLLQAVWG-FEYFGDVRTVDVTIRRLREKIEENPSKPEYILTRRG 230

Query: 216 LGY 218
           LGY
Sbjct: 231 LGY 233


>gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWKEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKTEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGKSG--EYIKTIYGVGYKLDC 223


>gi|218233819|ref|YP_002367876.1| regulatory protein VanR [Bacillus cereus B4264]
 gi|218161776|gb|ACK61768.1| regulatory protein VanR [Bacillus cereus B4264]
          Length = 229

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        ++G  +   ++ +  E L++   + +  I   ++      +
Sbjct: 7   ILIVDDDIEIRKIVSIYLKNEGYEI--IDASDAIEALETLRNKTIDLIILDIMLPKMDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR   Q+P+I +S        +    SG +D + KP +  E++AR+ +  RR +V
Sbjct: 65  EACLKIREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      E G ++V  + R   ++ E   L  +E  IL  L+ N+GK  +  +I+ 
Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++        +N V  HI+K+R+K+         + +   +GY +
Sbjct: 185 MVW-EDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYRV 229


>gi|206978377|ref|ZP_03239249.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206743411|gb|EDZ54846.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|324324690|gb|ADY19950.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 84/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTVDLVRGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 EHKQIQYHGIIWDEAKHSVSVHNEELFLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|62180703|ref|YP_217120.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224583379|ref|YP_002637177.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|62128336|gb|AAX66039.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224467906|gb|ACN45736.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322715177|gb|EFZ06748.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 240

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKLLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|323965502|gb|EGB60956.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323975545|gb|EGB70646.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|327250054|gb|EGE61773.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           STEC_7v]
          Length = 222

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMDGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYMLVAN 219


>gi|300853644|ref|YP_003778628.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300433759|gb|ADK13526.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 225

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ D  + +   +  +++        + +  S   D+  ++  L  K    L
Sbjct: 3   LLLVEDEVMLSDALVYILKKNNYAVDAAYDGITGQEMAESEIYDLIILDRMLPEK--NGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR    + P++ ++   S++  ++  D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  DILKFIRKKGIETPVLMLTAMDSIENRVEGLDNGADDYLVKPFSKEELLARIRALSRRHT 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + +   +   +       + E  G    L  +E ++LE L  N+ + + K QI   ++
Sbjct: 121 DFIQHGSIKLSSLTFNPLRGEIECNGNKTKLTTKESQLLELLARNKNQVLTKDQILDRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GL  +    N +E + S LRKKLR       +++ R +GY +
Sbjct: 181 GLDSDIEMNNNIEVYFSYLRKKLRELKCNVVIETIRGIGYCL 222


>gi|229171355|ref|ZP_04298940.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612059|gb|EEK69296.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 229

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 9   LLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPE--MDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|160941017|ref|ZP_02088356.1| hypothetical protein CLOBOL_05911 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436107|gb|EDP13874.1| hypothetical protein CLOBOL_05911 [Clostridium bolteae ATCC
           BAA-613]
          Length = 228

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +F+L DD +L+  G        G  ++   ++   + L ++   D++ ++  L       
Sbjct: 4   LFLLEDDLSLI-SGLSFAVKKQGYEIDAARTILEADTLWANGSYDLAILDVSLPD--GSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R IR  S+VP++ ++        +   D G DD + KP      L+R+ A+ RR +
Sbjct: 61  FDFCRKIRRMSKVPVMFLTAADEETDIIMGLDMGGDDYITKPFKLAVFLSRINALLRRSE 120

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +     +  I +          G+   L   E ++L   M +  + ++  QI S +
Sbjct: 121 NFNTAAAEISSNGIHIQLLKGTVYKNGKRLDLTASEYKLLCLFMEHPDQILSPDQILSKL 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +   ++ ++ + +  +I +LR K+ +  G  + + + R +GY   WN
Sbjct: 181 WDCSEQYIDNSSLTVYIRRLRIKIEDNPGAPERIITVRGMGYK--WN 225


>gi|87119340|ref|ZP_01075238.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Marinomonas sp. MED121]
 gi|86165731|gb|EAQ66998.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Marinomonas sp. MED121]
          Length = 225

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G      +  +         + D+  ++  L   G   +
Sbjct: 4   ILIVEDEPKLAELLTAYLAQSGYESHHLDRGDIVIDYLKQNQVDLILLDLMLP--GLDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S +P+I ++        L   + G DD V KP   RE++ARV A  RR+  
Sbjct: 62  EICKQVRLFSNIPIIMLTAKAEEIDRLLGLEMGADDYVCKPYSPREVVARVKANLRRVSF 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +T    +  D      +GE+  L   E ++L+ L++  G+   +  I   IY  
Sbjct: 122 DQVEEPKTEGFELDVDRLRVTYKGELIDLTTVEFQLLQLLISEPGRVFGREIIMKRIY-T 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
               V +  ++SHI KLRK++       + + S    GY  + N
Sbjct: 181 DSRVVSDRTIDSHIKKLRKRISMVAPELNVIHSVYGAGYRFENN 224


>gi|15800284|ref|NP_286296.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 EDL933]
 gi|15829863|ref|NP_308636.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128554|ref|NP_415103.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. MG1655]
 gi|26246549|ref|NP_752588.1| DNA-binding transcriptional activator CusR [Escherichia coli
           CFT073]
 gi|74311107|ref|YP_309526.1| DNA-binding transcriptional activator CusR [Shigella sonnei Ss046]
 gi|89107436|ref|AP_001216.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. W3110]
 gi|91209616|ref|YP_539602.1| DNA-binding transcriptional activator CusR [Escherichia coli UTI89]
 gi|110640801|ref|YP_668529.1| DNA-binding transcriptional activator CusR [Escherichia coli 536]
 gi|117622794|ref|YP_851707.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC
           O1]
 gi|157160063|ref|YP_001457381.1| DNA-binding transcriptional activator CusR [Escherichia coli HS]
 gi|168747766|ref|ZP_02772788.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4113]
 gi|168754663|ref|ZP_02779670.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4401]
 gi|168760288|ref|ZP_02785295.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4501]
 gi|168770166|ref|ZP_02795173.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4486]
 gi|168774625|ref|ZP_02799632.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4196]
 gi|168779053|ref|ZP_02804060.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4076]
 gi|168786410|ref|ZP_02811417.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC869]
 gi|168798123|ref|ZP_02823130.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC508]
 gi|170021072|ref|YP_001726026.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC
           8739]
 gi|170080150|ref|YP_001729470.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|170080251|ref|YP_001729571.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|170681461|ref|YP_001742686.1| DNA-binding transcriptional activator CusR [Escherichia coli
           SMS-3-5]
 gi|188493381|ref|ZP_03000651.1| transcriptional regulatory protein CusR [Escherichia coli 53638]
 gi|191172295|ref|ZP_03033837.1| transcriptional regulatory protein CusR [Escherichia coli F11]
 gi|193063345|ref|ZP_03044435.1| transcriptional regulatory protein CusR [Escherichia coli E22]
 gi|193069124|ref|ZP_03050082.1| transcriptional regulatory protein CusR [Escherichia coli E110019]
 gi|194427935|ref|ZP_03060480.1| transcriptional regulatory protein CusR [Escherichia coli B171]
 gi|194432525|ref|ZP_03064811.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012]
 gi|195936116|ref|ZP_03081498.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807343|ref|ZP_03249680.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4206]
 gi|208816331|ref|ZP_03257510.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4045]
 gi|208823294|ref|ZP_03263612.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4042]
 gi|209398379|ref|YP_002269201.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4115]
 gi|209917826|ref|YP_002291910.1| DNA-binding transcriptional activator CusR [Escherichia coli SE11]
 gi|215485613|ref|YP_002328044.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217324144|ref|ZP_03440228.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. TW14588]
 gi|218549855|ref|YP_002383646.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii
           ATCC 35469]
 gi|218557511|ref|YP_002390424.1| DNA-binding transcriptional activator CusR [Escherichia coli S88]
 gi|218688397|ref|YP_002396609.1| DNA-binding transcriptional activator CusR [Escherichia coli ED1a]
 gi|218694011|ref|YP_002401678.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989]
 gi|218698943|ref|YP_002406572.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI39]
 gi|218703903|ref|YP_002411422.1| DNA-binding transcriptional activator CusR [Escherichia coli
           UMN026]
 gi|227884451|ref|ZP_04002256.1| transcriptional regulatory protein CusR [Escherichia coli 83972]
 gi|237707459|ref|ZP_04537940.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA]
 gi|238899848|ref|YP_002925644.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli BW2952]
 gi|254791736|ref|YP_003076573.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. TW14359]
 gi|256023816|ref|ZP_05437681.1| DNA-binding transcriptional activator CusR [Escherichia sp.
           4_1_40B]
 gi|260842796|ref|YP_003220574.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O103:H2 str. 12009]
 gi|260853821|ref|YP_003227712.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O26:H11 str. 11368]
 gi|261224036|ref|ZP_05938317.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257730|ref|ZP_05950263.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O157:H7 str. FRIK966]
 gi|291281521|ref|YP_003498339.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O55:H7 str. CB9615]
 gi|293403832|ref|ZP_06647826.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli FVEC1412]
 gi|293408693|ref|ZP_06652532.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli B354]
 gi|293413867|ref|ZP_06656516.1| two-component system [Escherichia coli B185]
 gi|298379609|ref|ZP_06989214.1| two-component system [Escherichia coli FVEC1302]
 gi|300817922|ref|ZP_07098136.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300901064|ref|ZP_07119177.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300907733|ref|ZP_07125353.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300920632|ref|ZP_07137050.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300927346|ref|ZP_07143070.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300940500|ref|ZP_07155071.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300949241|ref|ZP_07163273.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300954363|ref|ZP_07166820.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|300990248|ref|ZP_07179164.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300996924|ref|ZP_07181589.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|301023989|ref|ZP_07187709.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|301027580|ref|ZP_07190910.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|301049754|ref|ZP_07196698.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|301302040|ref|ZP_07208173.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|301329064|ref|ZP_07222077.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301643823|ref|ZP_07243858.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|306812997|ref|ZP_07447190.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101]
 gi|307137184|ref|ZP_07496540.1| DNA-binding transcriptional activator CusR [Escherichia coli H736]
 gi|309798092|ref|ZP_07692466.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|312970644|ref|ZP_07784825.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|331641064|ref|ZP_08342199.1| transcriptional regulatory protein CusR [Escherichia coli H736]
 gi|331645728|ref|ZP_08346831.1| transcriptional regulatory protein CusR [Escherichia coli M605]
 gi|331651576|ref|ZP_08352595.1| transcriptional regulatory protein CusR [Escherichia coli M718]
 gi|331656596|ref|ZP_08357558.1| transcriptional regulatory protein CusR [Escherichia coli TA206]
 gi|331661932|ref|ZP_08362855.1| transcriptional regulatory protein CusR [Escherichia coli TA143]
 gi|331672070|ref|ZP_08372866.1| transcriptional regulatory protein CusR [Escherichia coli TA280]
 gi|331681986|ref|ZP_08382610.1| transcriptional regulatory protein CusR [Escherichia coli H299]
 gi|82583735|sp|P0AD00|CUSR_ECO57 RecName: Full=Transcriptional regulatory protein CusR
 gi|82583736|sp|P0ACZ9|CUSR_ECOL6 RecName: Full=Transcriptional regulatory protein CusR
 gi|82583737|sp|P0ACZ8|CUSR_ECOLI RecName: Full=Transcriptional regulatory protein CusR
 gi|7804906|gb|AAF70175.1|AF245661_2 CusR [Escherichia coli]
 gi|12513453|gb|AAG54904.1|AE005236_5 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|26106948|gb|AAN79132.1|AE016757_36 Transcriptional Regulatory protein cusR [Escherichia coli CFT073]
 gi|1778486|gb|AAB40769.1| CopR homolog [Escherichia coli]
 gi|1786784|gb|AAC73672.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. MG1655]
 gi|4062195|dbj|BAA35205.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K12 substr. W3110]
 gi|13360067|dbj|BAB34032.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|73854584|gb|AAZ87291.1| putative 2-component transcriptional regulator [Shigella sonnei
           Ss046]
 gi|91071190|gb|ABE06071.1| putative 2-component transcriptional regulator [Escherichia coli
           UTI89]
 gi|110342393|gb|ABG68630.1| probable two component response regulator transcription regulator
           protein [Escherichia coli 536]
 gi|115511918|gb|ABI99992.1| putative 2-component transcriptional regulator [Escherichia coli
           APEC O1]
 gi|157065743|gb|ABV04998.1| transcriptional regulatory protein CusR [Escherichia coli HS]
 gi|169756000|gb|ACA78699.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
 gi|169887985|gb|ACB01692.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|169888086|gb|ACB01793.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|170519179|gb|ACB17357.1| transcriptional regulatory protein CusR [Escherichia coli SMS-3-5]
 gi|187769690|gb|EDU33534.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4196]
 gi|188017686|gb|EDU55808.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4113]
 gi|188488580|gb|EDU63683.1| transcriptional regulatory protein CusR [Escherichia coli 53638]
 gi|189003139|gb|EDU72125.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4076]
 gi|189358078|gb|EDU76497.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4401]
 gi|189360901|gb|EDU79320.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4486]
 gi|189369137|gb|EDU87553.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4501]
 gi|189373725|gb|EDU92141.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC869]
 gi|189379305|gb|EDU97721.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC508]
 gi|190907394|gb|EDV66991.1| transcriptional regulatory protein CusR [Escherichia coli F11]
 gi|192930929|gb|EDV83533.1| transcriptional regulatory protein CusR [Escherichia coli E22]
 gi|192957668|gb|EDV88113.1| transcriptional regulatory protein CusR [Escherichia coli E110019]
 gi|194413910|gb|EDX30187.1| transcriptional regulatory protein CusR [Escherichia coli B171]
 gi|194419086|gb|EDX35169.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012]
 gi|208727144|gb|EDZ76745.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4206]
 gi|208732979|gb|EDZ81667.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4045]
 gi|208737487|gb|EDZ85171.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4042]
 gi|209159779|gb|ACI37212.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4115]
 gi|209777738|gb|ACI87181.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777740|gb|ACI87182.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777742|gb|ACI87183.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777744|gb|ACI87184.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777746|gb|ACI87185.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209911085|dbj|BAG76159.1| putative two-component response regulator [Escherichia coli SE11]
 gi|215263685|emb|CAS08019.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320365|gb|EEC28789.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. TW14588]
 gi|218350743|emb|CAU96435.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli 55989]
 gi|218357396|emb|CAQ90035.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia fergusonii ATCC 35469]
 gi|218364280|emb|CAR01951.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli S88]
 gi|218368929|emb|CAR16683.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli IAI39]
 gi|218425961|emb|CAR06772.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli ED1a]
 gi|218431000|emb|CAR11876.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli UMN026]
 gi|222032331|emb|CAP75070.1| Transcriptional regulatory protein cusR [Escherichia coli LF82]
 gi|226898669|gb|EEH84928.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA]
 gi|227838537|gb|EEJ49003.1| transcriptional regulatory protein CusR [Escherichia coli 83972]
 gi|238860861|gb|ACR62859.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli BW2952]
 gi|254591136|gb|ACT70497.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O157:H7 str. TW14359]
 gi|257752470|dbj|BAI23972.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O26:H11 str. 11368]
 gi|257757943|dbj|BAI29440.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O103:H2 str. 12009]
 gi|260450264|gb|ACX40686.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli DH1]
 gi|281177711|dbj|BAI54041.1| putative two-component response regulator [Escherichia coli SE15]
 gi|284920369|emb|CBG33430.1| two-component system response regulator [Escherichia coli 042]
 gi|290761394|gb|ADD55355.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O55:H7 str. CB9615]
 gi|291428418|gb|EFF01443.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli FVEC1412]
 gi|291433925|gb|EFF06898.1| two-component system [Escherichia coli B185]
 gi|291471871|gb|EFF14354.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli B354]
 gi|294494152|gb|ADE92908.1| transcriptional regulatory protein cusR [Escherichia coli IHE3034]
 gi|298279307|gb|EFI20815.1| two-component system [Escherichia coli FVEC1302]
 gi|299879285|gb|EFI87496.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|300298486|gb|EFJ54871.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|300304379|gb|EFJ58899.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|300318662|gb|EFJ68446.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|300355477|gb|EFJ71347.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300396795|gb|EFJ80333.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|300400551|gb|EFJ84089.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300407136|gb|EFJ90674.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300412371|gb|EFJ95681.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300416702|gb|EFK00013.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300451322|gb|EFK14942.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300454700|gb|EFK18193.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300529619|gb|EFK50681.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300842592|gb|EFK70352.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|300844580|gb|EFK72340.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301077805|gb|EFK92611.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|305853760|gb|EFM54199.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101]
 gi|307552442|gb|ADN45217.1| transcriptional regulatory protein CusR [Escherichia coli ABU
           83972]
 gi|307627991|gb|ADN72295.1| DNA-binding transcriptional activator CusR [Escherichia coli UM146]
 gi|308118333|gb|EFO55595.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|309700808|emb|CBJ00105.1| two-component system response regulator [Escherichia coli ETEC
           H10407]
 gi|310337293|gb|EFQ02431.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|312945116|gb|ADR25943.1| DNA-binding transcriptional activator CusR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315135236|dbj|BAJ42395.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli DH1]
 gi|315255136|gb|EFU35104.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1]
 gi|315287006|gb|EFU46421.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3]
 gi|315291379|gb|EFU50739.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1]
 gi|315616518|gb|EFU97135.1| transcriptional activator protein irlR [Escherichia coli 3431]
 gi|320180105|gb|EFW55046.1| Copper-sensing two-component system response regulator CusR
           [Shigella boydii ATCC 9905]
 gi|320192974|gb|EFW67614.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli O157:H7 str. EC1212]
 gi|320194244|gb|EFW68876.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli WV_060327]
 gi|320638018|gb|EFX07782.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. G5101]
 gi|320643424|gb|EFX12594.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H- str. 493-89]
 gi|320648759|gb|EFX17386.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H- str. H 2687]
 gi|320654345|gb|EFX22392.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660133|gb|EFX27660.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|323153719|gb|EFZ39967.1| transcriptional activator protein irlR [Escherichia coli EPECa14]
 gi|323158749|gb|EFZ44762.1| transcriptional activator protein irlR [Escherichia coli E128010]
 gi|323164006|gb|EFZ49814.1| transcriptional activator protein irlR [Shigella sonnei 53G]
 gi|323170689|gb|EFZ56339.1| transcriptional activator protein irlR [Escherichia coli LT-68]
 gi|323191206|gb|EFZ76470.1| transcriptional activator protein irlR [Escherichia coli RN587/1]
 gi|323938427|gb|EGB34680.1| heavy metal response regulator [Escherichia coli E1520]
 gi|323943161|gb|EGB39318.1| heavy metal response regulator [Escherichia coli E482]
 gi|323952851|gb|EGB48719.1| heavy metal response regulator [Escherichia coli H252]
 gi|323958328|gb|EGB54034.1| heavy metal response regulator [Escherichia coli H263]
 gi|323967516|gb|EGB62932.1| heavy metal response regulator [Escherichia coli M863]
 gi|323972194|gb|EGB67406.1| heavy metal response regulator [Escherichia coli TA007]
 gi|324010554|gb|EGB79773.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1]
 gi|324020182|gb|EGB89401.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3]
 gi|324114702|gb|EGC08670.1| heavy metal response regulator [Escherichia fergusonii B253]
 gi|324116644|gb|EGC10559.1| heavy metal response regulator [Escherichia coli E1167]
 gi|325498235|gb|EGC96094.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii
           ECD227]
 gi|326341321|gb|EGD65113.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli O157:H7 str. 1044]
 gi|326345902|gb|EGD69641.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli O157:H7 str. 1125]
 gi|327254248|gb|EGE65870.1| transcriptional activator protein irlR [Escherichia coli STEC_7v]
 gi|330910330|gb|EGH38840.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli AA86]
 gi|331037862|gb|EGI10082.1| transcriptional regulatory protein CusR [Escherichia coli H736]
 gi|331044480|gb|EGI16607.1| transcriptional regulatory protein CusR [Escherichia coli M605]
 gi|331049854|gb|EGI21912.1| transcriptional regulatory protein CusR [Escherichia coli M718]
 gi|331054844|gb|EGI26853.1| transcriptional regulatory protein CusR [Escherichia coli TA206]
 gi|331060354|gb|EGI32318.1| transcriptional regulatory protein CusR [Escherichia coli TA143]
 gi|331071059|gb|EGI42418.1| transcriptional regulatory protein CusR [Escherichia coli TA280]
 gi|331080665|gb|EGI51839.1| transcriptional regulatory protein CusR [Escherichia coli H299]
 gi|332085680|gb|EGI90844.1| transcriptional activator protein irlR [Shigella dysenteriae
           155-74]
 gi|332094233|gb|EGI99284.1| transcriptional activator protein irlR [Shigella boydii 5216-82]
 gi|332341911|gb|AEE55245.1| transcriptional activator protein IrlR [Escherichia coli UMNK88]
 gi|333008223|gb|EGK27698.1| transcriptional activator protein irlR [Shigella flexneri VA-6]
          Length = 227

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|310829931|ref|YP_003962288.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308741665|gb|ADO39325.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 230

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +   +    + + +  L  + R+D   I   L+  G    
Sbjct: 4   ILIIEDDRKIAELERDYLEINDFQV--ALAADGDTGLLFAVRDDFDLIVLDLMLPGVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + R IR   + P+I +S        +     G DD + KP    E++ARV A   R   
Sbjct: 62  AICRRIREKKETPIIMVSAKRDDVDKIRGLGLGADDYMVKPFSPAELVARVKAHIGRFER 121

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++  E   +R+  D R   ++G    L  +E  +L ++  N      K  +
Sbjct: 122 LTSQEKRKQHHIIEINGLRIDKDARRVYLRGAETALANKEFDLLLFMAENPNIVFNKETL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  ++GL D   +   V  H+++LR+K+  +      +++    GY  
Sbjct: 182 FERVWGL-DAVGDTTTVTVHVNRLREKIETDNREPRYIETVWGAGYRF 228


>gi|300855125|ref|YP_003780109.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435240|gb|ADK15007.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 233

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G  +E     E            +  ++  L        
Sbjct: 5   ILLVDDEKSILDVLTYALKREGYLVERAYDGEEALHKVDIFNPHIVILDLMLPV--MNGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +  +  + +I ++    +   +   + G DD + KP   RE+LAR+ ++ RRL  
Sbjct: 63  DICKKL-ENKNIGIIMLTAKEDIVDKILGLEFGADDYMTKPFDIRELLARIKSLVRRLNK 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +            + +    R   ++  +  L   E  +L  L++N G   ++ Q+ +
Sbjct: 122 TIDEKKDIGVITINDLNINKKKRTVSIKNVLVELTPMEFDLLYLLLSNPGIVYSREQLLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+ + D       V++HI ++RKKL +    D + +   +GY 
Sbjct: 182 IIWNM-DYVGGTRTVDTHIQRVRKKLGDSY-QDLIQTVYGIGYK 223


>gi|283455806|ref|YP_003360370.1| response regulator of two-component system [Bifidobacterium dentium
           Bd1]
 gi|283102440|gb|ADB09546.1| Response regulator of two-component system [Bifidobacterium dentium
           Bd1]
          Length = 224

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 84/226 (37%), Gaps = 16/226 (7%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +          +G +    +         +  R D+  ++  L       LE  
Sbjct: 2   VEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIMLPV--MDGLEAT 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122
           + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR+  +  
Sbjct: 60  KRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRAKV 119

Query: 123 -------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      + G + +    R   V GE   L   E  +L  L       + + ++  
Sbjct: 120 IAKNSENEKILDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKLLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   D +     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 180 EVWDWVDASG-TRTVDSHVKALRHKL----GSQTIRTVHGVGYAFE 220


>gi|296137486|ref|YP_003644728.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295797608|gb|ADG32398.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 240

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A    +G+ +      +  E    +AR D+  ++  L   G+  L
Sbjct: 7   ILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLMLP--GDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P++ ++        +   + G DD + KP   RE+LAR+  I RR + 
Sbjct: 65  TLCRQLRAKSDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRARS 124

Query: 122 SN--------NRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                       A      + +         G V  L   E R+L   +++  + + + Q
Sbjct: 125 LPVNFQPEDLREAHFAGWTLNTLHRHLISPAGVVVTLSGAEYRLLRIFLSHPNRVLNRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +     G   + ++   ++  +S+LR++L +       + + R +GY +
Sbjct: 185 LVDLTQGREADPLD-RSIDVQVSRLRQRLGDDPRDPVLIKTVRGMGYVL 232


>gi|228970770|ref|ZP_04131410.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228788895|gb|EEM36834.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 242

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +    NS E       +       ++  +        
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFKFVLLDIMMP--KMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN- 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV----DSKRFLGYS 219
           +   E+  V+SHI  LR KLR      P+     +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKA--HFPIDHHLKTVYGVGYR 236


>gi|217077821|ref|YP_002335539.1| response regulator receiver [Thermosipho africanus TCF52B]
 gi|217037676|gb|ACJ76198.1| response regulator receiver [Thermosipho africanus TCF52B]
          Length = 217

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++      F  +  +++     E         + DV  ++  L        
Sbjct: 3   ILVVEDDDKLRRLLELEFKHEKCTVKTCEYGEDAIIEYQEFKPDVVVLDIMLPD--IDGT 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR       +I ++     +  L+ F+SG DD V KP    E+ ARV AI RR  
Sbjct: 61  EVAKKIRKLDPSAGIIMLTALSEKKNKLEGFESGADDYVVKPFDFEELFARVKAIARRKN 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ N+  +   + +    R+   +G+   L + E  +L YL+ N G+ V+K +I  A++G
Sbjct: 121 ITLNDEIKIKDLIINISKREVIFKGKPINLSKTEFDLLAYLVKNAGRVVSKEEILDAVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      EN VE +I+ LRKKL      D + + R +GY+I
Sbjct: 181 IS-YEGSENTVEVYINYLRKKL----SSDIIKTVRGIGYTI 216


>gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1]
 gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1]
          Length = 222

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +           G  +                  D+  ++  L        
Sbjct: 5   ILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSARENTPDLVILDLGLPDF--DGA 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   ++   ++  ++G DD + KP H  E++ARV     R + 
Sbjct: 63  EVARRLRKTSSVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQL-RHQQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +    R     G    L  +E  +L +L    G+  ++ +I   ++   
Sbjct: 122 HGEVITIGALEIHPQKRLCSYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +     NVV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGYGVIRTVRGIGYAL 219


>gi|186686379|ref|YP_001869575.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468831|gb|ACC84632.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 232

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + +    L   +G  ++  F+     E+ Q+    D+  ++  L   G+  
Sbjct: 3   ILLVDDEVELTEPLSRLLTREGYIVDAAFDGTIGSEYAQA-GSYDLLILDWMLP--GKTG 59

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +R      P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR 
Sbjct: 60  LEICQQLRRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRS 119

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +  R     + +  + +    QG +  L ++E ++L+Y M + G+ +   QI 
Sbjct: 120 GSQTYETTTGRLTVADLELDCENQVAYRQGRIIELSQKESQLLQYFMEHTGQLMTHAQIM 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++   +E    NV+ + I  LR+K+        + +    GY  
Sbjct: 180 ENLW-QEEEQPSSNVIAALIRLLRRKIEVGRETALIHTVYGKGYRF 224


>gi|310640765|ref|YP_003945523.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309245715|gb|ADO55282.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 235

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 92/232 (39%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +  +     +G +L    + + EE L +  R     +   L+      +
Sbjct: 5   ILLIEDDLSIAEMLLKALTKEGYNLT--TASDGEEGLNAFERHTYDLVLVDLMMPKVDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ +S   S          G DD V KP    E+ AR+ +  RR   
Sbjct: 63  EVIRQIRTRSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTT 122

Query: 122 SNN-----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             G +R+  D       G    L  +E  IL+   +N  +   K
Sbjct: 123 YARLQQQEEQPQAQVLTYGNLRIDFDHFTVIRDGNEIQLTAKESDILKLFASNPNRVFTK 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            Q++  I+   D   +ENV+  HI +LR+K+  +      + +   +GY  +
Sbjct: 183 AQLYGFIW-KDDYMGDENVINVHIRRLREKIEEDPSHPVHIKTLWGIGYKWE 233


>gi|303252114|ref|ZP_07338283.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248279|ref|ZP_07530305.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302649096|gb|EFL79283.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306855213|gb|EFM87390.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 213

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 91/197 (46%), Gaps = 6/197 (3%)

Query: 29  FNSLEFEEWLQS----SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPS 83
           +  LE E++  +    S +  +  ++  L G  G + ++  +     +Q+P++ ++   S
Sbjct: 11  YQVLEAEDYQSAVKKLSEKPKLILLDWMLPGCSGIQFIQYLKKSEETAQIPILMLTARSS 70

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ 143
               +   ++G DD V KP   + ++AR+ ++ RR   +N+      + +  + +    Q
Sbjct: 71  EDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDDLILDQNAKRVTFQ 130

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   L   E ++L + M +  K  ++ Q+   ++G  D  VE+  V+S+I +LRK L  
Sbjct: 131 KKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWGN-DIYVEDRTVDSYIRRLRKSLEP 189

Query: 204 KLGFDPVDSKRFLGYSI 220
                 V + R  GY  
Sbjct: 190 CGFERYVQTVRGSGYRF 206


>gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 228

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 8   LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMP--GMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++   LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYEFLEYLVQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|160894765|ref|ZP_02075540.1| hypothetical protein CLOL250_02316 [Clostridium sp. L2-50]
 gi|156863699|gb|EDO57130.1| hypothetical protein CLOL250_02316 [Clostridium sp. L2-50]
          Length = 236

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++  +    + G   EGF + +      +    D+  ++  L  +    
Sbjct: 16  LIYIVEDDMNIQEIEMFALKNTGYVTEGFANAKSFFSRMTEKIPDLILLDIMLPDQ--DG 73

Query: 61  LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ R +R   +   VP+I ++   +    +   D G DD + KP    E+++RV A+ R
Sbjct: 74  LEIVRKLRERPETVRVPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLR 133

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R K    +       + + S+ R   V      L  +E  +L+ LM N G  + +  I  
Sbjct: 134 RSKSIQEDQILRLKNVTLDSEKRIVHVNDIPCELTFKEFELLKLLMINAGIVLRREVIMM 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D   E   ++ HI  LR+KL +    + + + R +GY ++
Sbjct: 194 DVWGT-DYEGESRTLDMHIKTLRQKLGDAG--NMIKTVRNVGYKME 236


>gi|302552564|ref|ZP_07304906.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470182|gb|EFL33275.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 268

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +      +         R D   ++  L       L 
Sbjct: 45  LVVDDELSITELLSMALRYEGWQIRSAGDGQGAIQSARDFRPDAVVLDMMLPD--MDGLA 102

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 103 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 162

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R+E     G + +  D  +    G+   L   E  +L +LM N  + ++K QI   +
Sbjct: 163 ADRRSESMLVVGDLTLDEDSHEVTRAGDNIHLTATEFELLRFLMRNPRRVLSKAQILDRV 222

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 223 W-SYDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 263


>gi|229816442|ref|ZP_04446743.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
 gi|229807984|gb|EEP43785.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
          Length = 278

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 15/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +    +      L      D++ ++  L        
Sbjct: 47  ILVVDDEKTITDLVGIYLRNEGFDVTLAYNGADAARLILEREFDLAVLDIMLPDV--DGF 104

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR     P+I ++   S    ++    G DD + KP    E++AR  A  RR   
Sbjct: 105 ELLRTIRTERTYPVIMLTARDSQSDKIEGLTLGADDYMVKPFRPLELVARCKAQLRRYTR 164

Query: 122 SNNR------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             +R                 + +  D R   V  +       E  IL YL  +RG  V 
Sbjct: 165 YGSREQAAPVEDAGPIISFNGLEINRDARTVTVDEKSVRCTPLEYSILLYLAEHRGHVVP 224

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             ++F A++     A   N V  HI  LR+KL  +      + +   +GY+I+
Sbjct: 225 VEELFRAVWDEEFMAGSNNTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTIE 277


>gi|163858914|ref|YP_001633212.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163262642|emb|CAP44945.1| two-component response regulator [Bordetella petrii]
          Length = 224

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         +    ++  ++             D+  ++  L   G    
Sbjct: 3   ILVIEDERKLAHYLQKGLTEHNYVVDIASNGVDGRHAALEGNYDLVVLDVMLP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R     P++ ++    ++  +   ++G DD + KP    E+LAR+ A+ RR + 
Sbjct: 61  WILKDLRETKDTPVLMLTARDKVEDRVRGLENGADDYLVKPFAFSELLARIQALLRRGRG 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   + G + +    R     G    L  +E  +L  L+  +G+ +++T +   ++ +
Sbjct: 121 QESTLLKLGDLELDLARRKAHRAGMRLDLTAKEFTLLALLLRRQGQVLSRTMLAEQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + N +E  + +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNAIEVAVRRLRAKIDDPFDRRLLHTVRGMGYVLE 220


>gi|117925190|ref|YP_865807.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608946|gb|ABK44401.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 235

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +       F   G  ++   N  E    +      D+  ++  L   G   
Sbjct: 5   ILIVEDETDLLRTLEYNFTQAGFDTVTTTNGREAIRLVSQKPEPDLVVLDLMLP--GISG 62

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            ++ + +R   +  ++P+I ++           FD+G DD V KP   RE+L RV A+ R
Sbjct: 63  YDVCKTLRDRESTRKIPIIMLTARGESLDQEMGFDAGADDYVTKPFSMRELLLRVKALMR 122

Query: 118 RLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R +V +           GP+ V        V G+   L   E ++L   + NRG+ + + 
Sbjct: 123 RAQVVSLPSAAVEDLCFGPLTVDQTAHQVWVNGQEVQLTYMEFKLLVAFLENRGRLLTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   ++GL   AV+   +++H+ +LR+KL +      +++ R  GY  
Sbjct: 183 FLLDEVWGLS-AAVQTRTIDTHVKRLRQKLSDAG--QYIETLRGAGYRF 228


>gi|330944587|gb|EGH46541.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330954542|gb|EGH54802.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 222

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++            +S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLP--GMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R+     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+KL    G   V+++R  GY
Sbjct: 181 DGENE-RDSNVIEVHVNHLRRKL----GRAVVETRRGQGY 215


>gi|320179124|gb|EFW54083.1| Transcriptional regulatory protein basR/pmrA [Shigella boydii ATCC
           9905]
          Length = 222

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYMLVAN 219


>gi|241203804|ref|YP_002974900.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857694|gb|ACS55361.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 223

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +         + G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   ILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPELDGVTV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  +   A   VP++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 63  LE--KWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|116071684|ref|ZP_01468952.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|116065307|gb|EAU71065.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 255

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V+   +      G  +      E    L  S   D+  ++  L         
Sbjct: 16  LVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLP--KLDGFA 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   
Sbjct: 74  VCRRLRAESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 133

Query: 123 NNRAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           N   E+            G + V ++ R      E   L   E  +LE L  + G  V +
Sbjct: 134 NAVVESRELPTGQGVLCLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 193

Query: 171 TQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GYS
Sbjct: 194 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYS 244


>gi|74314598|ref|YP_313017.1| DNA-binding transcriptional regulator BasR [Shigella sonnei Ss046]
 gi|73858075|gb|AAZ90782.1| transcriptional regulatory protein [Shigella sonnei Ss046]
 gi|323164603|gb|EFZ50403.1| transcriptional regulatory protein basR/pmrA [Shigella sonnei 53G]
          Length = 222

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYTCDGVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYMLVAN 219


>gi|11465394|ref|NP_045215.1| Ycf27 [Cyanidium caldarium]
 gi|14548002|sp|Q9TLQ4|YCF27_CYACA RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|6466297|gb|AAF12879.1|AF022186_1 unknown [Cyanidium caldarium]
          Length = 249

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 100/231 (43%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G S+    + E    + ++   D+  ++  +        
Sbjct: 14  LLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLIILDVMMP--KLDGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S +P+I ++    +   +   + G DD V KP   RE+ AR+ +I RR++ 
Sbjct: 72  GVCQEIRKESDIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRRIQT 131

Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            N +          +TG + +  + +      E+  L   E  +LE L++  GK  ++++
Sbjct: 132 RNAKLKPYDNINLFKTGSLNIDLEKKQIYKNNELIRLTEMEFSLLELLVSQSGKAFSRSK 191

Query: 173 IFSAIYGL----FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           I   ++G      +   +  +V+ HIS+LR KL +       + + R  GY
Sbjct: 192 ILKEVWGYKLSKHEPIADTRIVDVHISRLRAKLEDDPTNPTLILTARGTGY 242


>gi|322805361|emb|CBZ02925.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 228

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 105/224 (46%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +  + + +  E ++     D+  I   L+       
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKV--YCTTKGLESIEIFKSIDIQLIILDLMLPDISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RIIR  S V +  ++   +L   ++  + G D+ + KP   RE+ ARV A++RRL  
Sbjct: 62  EVCRIIRQSSDVHIFMLTAKRALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            N+ +    + G + +  D R  +V G+   +   E  IL  L++N+G  +++ Q+ + I
Sbjct: 122 YNSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGIVLSREQLINKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 250

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D              +G +++  +          + R D+  ++  +       L
Sbjct: 5   ILVAEDDEKQARLIRIYLEREGNAVQTVHDGRSAIDRARTTRPDLIVLDVMMPQV--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ RI+R  SQVP++ ++   + +  L   D G DD + KP   RE+ ARV A+ RR + 
Sbjct: 63  DVCRILRTDSQVPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALLRRSRA 122

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + + +   +  + GE+  L  +E  IL  L A  G+   + QI   ++
Sbjct: 123 ITGEPTLIRAGALEIDTACFEVRLAGELIALTGKEFAILALLAAEPGRAFTRAQIIDRVF 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSI 220
           G F++ V E  V++H+  LR+KL          V++    GY +
Sbjct: 183 G-FEQNVLERTVDAHVMNLRRKLEQRGPGAPRMVETVYGRGYRL 225


>gi|34495671|ref|NP_899886.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472]
 gi|34101526|gb|AAQ57895.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472]
          Length = 243

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 95/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++         G  +E     +  +   +  R D+  ++  +   GE  L
Sbjct: 6   ILVVDDDAKLRELLTRYLTQQGYIVETLPDPKDLDRKLARNRPDLIVLDVMMP--GEDGL 63

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA  +  P+I ++        +   + G DD + KP + RE+ AR+ ++ RR  
Sbjct: 64  AVVRRLRAQGETLPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELTARIQSVLRRHH 123

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     +++  E G   +    R+    G+   L   E  +L  L+++  + + + 
Sbjct: 124 ATPALAALHNADDVVEFGEFVLNLGQRELRRAGQPVSLTSAEFAVLSVLVSHPRRPLTRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD---PVDSKRFLGYSI 220
           Q+     G  +    +  ++ HIS+LRK L +         + +    GY  
Sbjct: 184 QLMELALGKGNGESLDRSIDVHISRLRKALESGDSDSQLRYIQTVWGYGYVF 235


>gi|24216802|ref|NP_714283.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
 gi|45659090|ref|YP_003176.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24198167|gb|AAN51301.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
 gi|45602336|gb|AAS71813.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 233

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       ++G  ++   +             D+  ++  L G G   ++
Sbjct: 13  LVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLIILDLMLPGIG--GMD 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + I+    +P+I ++        +   + G DD V KP   RE++ARV ++ RR+K  
Sbjct: 71  LCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRIKDE 130

Query: 123 NN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G I +        +      L   E +IL   M N G    + ++   +
Sbjct: 131 EEDEFEGNITIGNIFLNLKAHKAFINNSEVDLTLIEYKILNLFMTNPGVAFTRDKLLDRV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D  V +  V+ +I +LR KL +    + +++ R +GY  +
Sbjct: 191 WGK-DIYVTDRAVDVNIKRLRDKLGD--EKERLETIRGIGYRFN 231


>gi|16765461|ref|NP_461076.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56412969|ref|YP_150044.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161613184|ref|YP_001587149.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167991049|ref|ZP_02572148.1| response regulator [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168229457|ref|ZP_02654515.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168236293|ref|ZP_02661351.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168242208|ref|ZP_02667140.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194451571|ref|YP_002046183.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194472565|ref|ZP_03078549.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194737843|ref|YP_002115222.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250857|ref|YP_002147092.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197264591|ref|ZP_03164665.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361899|ref|YP_002141535.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198242249|ref|YP_002216218.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200389136|ref|ZP_03215748.1| response regulator [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929186|ref|ZP_03220329.1| response regulator [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205353273|ref|YP_002227074.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207857567|ref|YP_002244218.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|238912561|ref|ZP_04656398.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16420665|gb|AAL21035.1| response regulator in two-component regulatory system with BaeS
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56127226|gb|AAV76732.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161362548|gb|ABX66316.1| hypothetical protein SPAB_00893 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409875|gb|ACF70094.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458929|gb|EDX47768.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194713345|gb|ACF92566.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197093375|emb|CAR58825.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214560|gb|ACH51957.1| DNA-binding response regulator BaeR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242846|gb|EDY25466.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197290555|gb|EDY29910.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936765|gb|ACH74098.1| response regulator [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199606234|gb|EDZ04779.1| response regulator [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321730|gb|EDZ06929.1| response regulator [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205273054|emb|CAR38003.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205330587|gb|EDZ17351.1| response regulator [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335782|gb|EDZ22546.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205338415|gb|EDZ25179.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|206709370|emb|CAR33710.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261247346|emb|CBG25171.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994189|gb|ACY89074.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158692|emb|CBW18204.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913123|dbj|BAJ37097.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224781|gb|EFX49844.1| Response regulator BaeR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615161|gb|EFY12083.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322617752|gb|EFY14648.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624654|gb|EFY21485.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626895|gb|EFY23691.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322634081|gb|EFY30817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635728|gb|EFY32438.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640267|gb|EFY36930.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646315|gb|EFY42828.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649408|gb|EFY45844.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656528|gb|EFY52817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661504|gb|EFY57728.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322665608|gb|EFY61792.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667132|gb|EFY63299.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671138|gb|EFY67266.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675221|gb|EFY71298.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680830|gb|EFY76865.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687005|gb|EFY82982.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323130456|gb|ADX17886.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192769|gb|EFZ77996.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198799|gb|EFZ83898.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204931|gb|EFZ89922.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208234|gb|EFZ93178.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210956|gb|EFZ95817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215741|gb|EGA00484.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323223394|gb|EGA07726.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227221|gb|EGA11392.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231186|gb|EGA15301.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233621|gb|EGA17713.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237691|gb|EGA21751.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245674|gb|EGA29668.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247751|gb|EGA31693.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252967|gb|EGA36800.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256769|gb|EGA40494.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323259475|gb|EGA43110.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323268258|gb|EGA51733.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271952|gb|EGA55368.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326623967|gb|EGE30312.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628362|gb|EGE34705.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989065|gb|AEF08048.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 240

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|163849376|ref|YP_001637420.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222527373|ref|YP_002571844.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163670665|gb|ABY37031.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222451252|gb|ACM55518.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 230

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   V+        + G  +   +       +    R D+  ++  +        
Sbjct: 5   ILIIDDHLNVRTMIADYLQEIGYRVVTASDGAEGLIIARRVRPDLVLLDIMMP--KLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              +  R   Q P+I ++        +   + G DD V KP   +E++AR+ A+ RR   
Sbjct: 63  GFLQAYRREHQAPVILLTARIDETDKVVGLELGADDYVTKPFSLKELVARIRAVLRRTAA 122

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G + +    R   V      L   E  +L  LMA+ G+   + Q+   
Sbjct: 123 ARQPNEEQPLRIGNLELNRATRMVTVDERPIYLTPSEFALLALLMASPGRVYTREQLLEH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           + G   E VE   ++ HI  LR+K+  +      +++   +GY 
Sbjct: 183 LQGNSYEGVE-RTIDVHIRNLRRKIEPDPTNPTYIETVFGIGYR 225


>gi|15804705|ref|NP_290746.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 EDL933]
 gi|15834349|ref|NP_313122.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. Sakai]
 gi|110644471|ref|YP_672201.1| DNA-binding transcriptional regulator BasR [Escherichia coli 536]
 gi|157158920|ref|YP_001465612.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           E24377A]
 gi|157163578|ref|YP_001460896.1| DNA-binding transcriptional regulator BasR [Escherichia coli HS]
 gi|168748031|ref|ZP_02773053.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755294|ref|ZP_02780301.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760973|ref|ZP_02785980.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766383|ref|ZP_02791390.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774482|ref|ZP_02799489.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780536|ref|ZP_02805543.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4076]
 gi|168784741|ref|ZP_02809748.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC869]
 gi|168798215|ref|ZP_02823222.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC508]
 gi|170021889|ref|YP_001726843.1| DNA-binding transcriptional regulator BasR [Escherichia coli ATCC
           8739]
 gi|170679832|ref|YP_001746506.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           SMS-3-5]
 gi|188494489|ref|ZP_03001759.1| DNA-binding response regulator BasR [Escherichia coli 53638]
 gi|191165619|ref|ZP_03027459.1| DNA-binding response regulator BasR [Escherichia coli B7A]
 gi|191173347|ref|ZP_03034876.1| DNA-binding response regulator BasR [Escherichia coli F11]
 gi|193063133|ref|ZP_03044225.1| DNA-binding response regulator BasR [Escherichia coli E22]
 gi|193067895|ref|ZP_03048861.1| DNA-binding response regulator BasR [Escherichia coli E110019]
 gi|194426834|ref|ZP_03059387.1| DNA-binding response regulator BasR [Escherichia coli B171]
 gi|194437292|ref|ZP_03069390.1| DNA-binding response regulator BasR [Escherichia coli 101-1]
 gi|195935902|ref|ZP_03081284.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808477|ref|ZP_03250814.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813842|ref|ZP_03255171.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820064|ref|ZP_03260384.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397598|ref|YP_002273657.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325375|ref|ZP_03441459.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218556665|ref|YP_002389579.1| DNA-binding transcriptional regulator BasR [Escherichia coli IAI1]
 gi|218697815|ref|YP_002405482.1| DNA-binding transcriptional regulator BasR [Escherichia coli 55989]
 gi|218707728|ref|YP_002415247.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           UMN026]
 gi|253775258|ref|YP_003038089.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037123|ref|ZP_04871200.1| two component transcriptional regulator [Escherichia sp. 1_1_43]
 gi|254796135|ref|YP_003080972.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. TW14359]
 gi|256024989|ref|ZP_05438854.1| DNA-binding transcriptional regulator BasR [Escherichia sp.
           4_1_40B]
 gi|260846908|ref|YP_003224686.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O103:H2 str. 12009]
 gi|260858217|ref|YP_003232108.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O26:H11 str. 11368]
 gi|260870866|ref|YP_003237268.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O111:H- str. 11128]
 gi|261225234|ref|ZP_05939515.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255514|ref|ZP_05948047.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O157:H7 str. FRIK966]
 gi|291285529|ref|YP_003502347.1| DNA-binding response regulator BasR [Escherichia coli O55:H7 str.
           CB9615]
 gi|293402745|ref|ZP_06646842.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           FVEC1412]
 gi|293407838|ref|ZP_06651678.1| DNA-binding transcriptional regulator BasR [Escherichia coli B354]
 gi|293417619|ref|ZP_06660241.1| two-component system [Escherichia coli B185]
 gi|293476410|ref|ZP_06664818.1| two-component system [Escherichia coli B088]
 gi|298378274|ref|ZP_06988158.1| two-component system [Escherichia coli FVEC1302]
 gi|300818032|ref|ZP_07098245.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821199|ref|ZP_07101347.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300897526|ref|ZP_07115941.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300906439|ref|ZP_07124136.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300924382|ref|ZP_07140357.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300930477|ref|ZP_07145878.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300947736|ref|ZP_07161900.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300954156|ref|ZP_07166622.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300994998|ref|ZP_07181022.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301017387|ref|ZP_07182140.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301021686|ref|ZP_07185674.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301302808|ref|ZP_07208937.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301330508|ref|ZP_07223121.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301644716|ref|ZP_07244694.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307140806|ref|ZP_07500162.1| DNA-binding transcriptional regulator BasR [Escherichia coli H736]
 gi|307312050|ref|ZP_07591687.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309796881|ref|ZP_07691283.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|312974084|ref|ZP_07788255.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1827-70]
 gi|331644860|ref|ZP_08345977.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H736]
 gi|331655943|ref|ZP_08356931.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M718]
 gi|331665779|ref|ZP_08366673.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA143]
 gi|331670976|ref|ZP_08371810.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA271]
 gi|331680240|ref|ZP_08380899.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H591]
 gi|331681048|ref|ZP_08381685.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H299]
 gi|12519083|gb|AAG59312.1|AE005644_6 transcriptional regulatory protein 2-component regulatory system
           member [Escherichia coli O157:H7 str. EDL933]
 gi|13364572|dbj|BAB38518.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli O157:H7 str. Sakai]
 gi|56540527|gb|AAV92717.1| PmrA [Escherichia coli]
 gi|56540529|gb|AAV92718.1| PmrA [Escherichia coli]
 gi|56540531|gb|AAV92719.1| PmrA [Escherichia coli]
 gi|56540533|gb|AAV92720.1| PmrA [Escherichia coli]
 gi|56540535|gb|AAV92721.1| PmrA [Escherichia coli]
 gi|56540537|gb|AAV92722.1| PmrA [Escherichia coli]
 gi|56540539|gb|AAV92723.1| PmrA [Escherichia coli]
 gi|56540541|gb|AAV92724.1| PmrA [Escherichia coli]
 gi|56540543|gb|AAV92725.1| PmrA [Escherichia coli]
 gi|56540545|gb|AAV92726.1| PmrA [Escherichia coli]
 gi|56540547|gb|AAV92727.1| PmrA [Escherichia coli]
 gi|56540549|gb|AAV92728.1| PmrA [Escherichia coli]
 gi|56540551|gb|AAV92729.1| PmrA [Escherichia coli]
 gi|56540553|gb|AAV92730.1| PmrA [Escherichia coli]
 gi|56540555|gb|AAV92731.1| PmrA [Escherichia coli]
 gi|56540557|gb|AAV92732.1| PmrA [Escherichia coli]
 gi|56540559|gb|AAV92733.1| PmrA [Escherichia coli]
 gi|56540561|gb|AAV92734.1| PmrA [Escherichia coli]
 gi|56540565|gb|AAV92736.1| PmrA [Escherichia coli]
 gi|56540567|gb|AAV92737.1| PmrA [Escherichia coli]
 gi|56540569|gb|AAV92738.1| PmrA [Escherichia coli]
 gi|56540571|gb|AAV92739.1| PmrA [Escherichia coli]
 gi|56540573|gb|AAV92740.1| PmrA [Escherichia coli]
 gi|56540575|gb|AAV92741.1| PmrA [Escherichia coli]
 gi|56540579|gb|AAV92743.1| PmrA [Escherichia coli]
 gi|56540581|gb|AAV92744.1| PmrA [Escherichia coli]
 gi|56540583|gb|AAV92745.1| PmrA [Escherichia coli]
 gi|56540589|gb|AAV92748.1| PmrA [Escherichia coli]
 gi|56540597|gb|AAV92752.1| PmrA [Escherichia coli]
 gi|56540599|gb|AAV92753.1| PmrA [Escherichia coli]
 gi|56540603|gb|AAV92755.1| PmrA [Escherichia coli]
 gi|56540605|gb|AAV92756.1| PmrA [Escherichia coli]
 gi|56540607|gb|AAV92757.1| PmrA [Escherichia coli]
 gi|56540643|gb|AAV92775.1| PmrA [Escherichia coli]
 gi|56540645|gb|AAV92776.1| PmrA [Escherichia coli]
 gi|56540647|gb|AAV92777.1| PmrA [Escherichia coli]
 gi|56540649|gb|AAV92778.1| PmrA [Escherichia coli]
 gi|56540651|gb|AAV92779.1| PmrA [Escherichia coli]
 gi|110346063|gb|ABG72300.1| transcriptional regulatory protein BasR/PmrA [Escherichia coli 536]
 gi|157069258|gb|ABV08513.1| DNA-binding response regulator BasR [Escherichia coli HS]
 gi|157080950|gb|ABV20658.1| DNA-binding response regulator BasR [Escherichia coli E24377A]
 gi|169756817|gb|ACA79516.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|170517550|gb|ACB15728.1| DNA-binding response regulator BasR [Escherichia coli SMS-3-5]
 gi|187769816|gb|EDU33660.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017496|gb|EDU55618.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489688|gb|EDU64791.1| DNA-binding response regulator BasR [Escherichia coli 53638]
 gi|189001669|gb|EDU70655.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357501|gb|EDU75920.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364240|gb|EDU82659.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368662|gb|EDU87078.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374840|gb|EDU93256.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC869]
 gi|189379213|gb|EDU97629.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC508]
 gi|190904314|gb|EDV64023.1| DNA-binding response regulator BasR [Escherichia coli B7A]
 gi|190906323|gb|EDV65933.1| DNA-binding response regulator BasR [Escherichia coli F11]
 gi|192931392|gb|EDV83994.1| DNA-binding response regulator BasR [Escherichia coli E22]
 gi|192958870|gb|EDV89307.1| DNA-binding response regulator BasR [Escherichia coli E110019]
 gi|194415170|gb|EDX31439.1| DNA-binding response regulator BasR [Escherichia coli B171]
 gi|194423848|gb|EDX39837.1| DNA-binding response regulator BasR [Escherichia coli 101-1]
 gi|208728278|gb|EDZ77879.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735119|gb|EDZ83806.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740187|gb|EDZ87869.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158998|gb|ACI36431.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4115]
 gi|209750778|gb|ACI73696.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750780|gb|ACI73697.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750782|gb|ACI73698.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750784|gb|ACI73699.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750786|gb|ACI73700.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|217321596|gb|EEC30020.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218354547|emb|CAV01439.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli 55989]
 gi|218363434|emb|CAR01088.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli IAI1]
 gi|218434825|emb|CAR15760.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli UMN026]
 gi|226840229|gb|EEH72231.1| two component transcriptional regulator [Escherichia sp. 1_1_43]
 gi|242379640|emb|CAQ34462.1| BasR transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253326302|gb|ACT30904.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253980104|gb|ACT45774.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli BL21(DE3)]
 gi|254595535|gb|ACT74896.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli O157:H7 str. TW14359]
 gi|257756866|dbj|BAI28368.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O26:H11 str. 11368]
 gi|257762055|dbj|BAI33552.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O103:H2 str. 12009]
 gi|257767222|dbj|BAI38717.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O111:H- str. 11128]
 gi|290765402|gb|ADD59363.1| DNA-binding response regulator BasR [Escherichia coli O55:H7 str.
           CB9615]
 gi|291320863|gb|EFE60305.1| two-component system [Escherichia coli B088]
 gi|291429660|gb|EFF02674.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           FVEC1412]
 gi|291430337|gb|EFF03335.1| two-component system [Escherichia coli B185]
 gi|291472089|gb|EFF14571.1| DNA-binding transcriptional regulator BasR [Escherichia coli B354]
 gi|298280608|gb|EFI22109.1| two-component system [Escherichia coli FVEC1302]
 gi|299882731|gb|EFI90942.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300304895|gb|EFJ59415.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300318845|gb|EFJ68629.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300358747|gb|EFJ74617.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300397919|gb|EFJ81457.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300401775|gb|EFJ85313.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300419416|gb|EFK02727.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300452682|gb|EFK16302.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300461640|gb|EFK25133.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300526088|gb|EFK47157.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300529442|gb|EFK50504.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300842028|gb|EFK69788.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300843533|gb|EFK71293.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301076970|gb|EFK91776.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|306907857|gb|EFN38358.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|308119522|gb|EFO56784.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|309704580|emb|CBJ03930.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310331618|gb|EFP98874.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1827-70]
 gi|315063430|gb|ADT77757.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli W]
 gi|315253794|gb|EFU33762.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|315617492|gb|EFU98098.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           3431]
 gi|320175437|gb|EFW50537.1| Transcriptional regulatory protein basR/pmrA [Shigella dysenteriae
           CDC 74-1112]
 gi|320190755|gb|EFW65405.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           O157:H7 str. EC1212]
 gi|320200754|gb|EFW75340.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           EC4100B]
 gi|320638872|gb|EFX08518.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. G5101]
 gi|320644241|gb|EFX13306.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H- str. 493-89]
 gi|320649559|gb|EFX18083.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H- str. H 2687]
 gi|320654955|gb|EFX22916.1| DNA-binding transcriptional regulator BasR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660462|gb|EFX27923.1| DNA-binding transcriptional regulator BasR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320665732|gb|EFX32769.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155841|gb|EFZ42009.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           EPECa14]
 gi|323162098|gb|EFZ47967.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           E128010]
 gi|323171538|gb|EFZ57184.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           LT-68]
 gi|323176002|gb|EFZ61594.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1180]
 gi|323182218|gb|EFZ67628.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1357]
 gi|323935427|gb|EGB31765.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323940032|gb|EGB36226.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323946107|gb|EGB42142.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323960387|gb|EGB56024.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323969906|gb|EGB65184.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|324015821|gb|EGB85040.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|324118681|gb|EGC12573.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|326346590|gb|EGD70324.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           O157:H7 str. 1044]
 gi|331035835|gb|EGI08073.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H736]
 gi|331046297|gb|EGI18387.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M718]
 gi|331056830|gb|EGI28824.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA143]
 gi|331061890|gb|EGI33815.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA271]
 gi|331071703|gb|EGI43039.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H591]
 gi|331081269|gb|EGI52430.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H299]
 gi|332083467|gb|EGI88691.1| transcriptional regulatory protein basR/pmrA [Shigella boydii
           5216-82]
 gi|332346120|gb|AEE59454.1| transcriptional regulatory protein BasR [Escherichia coli UMNK88]
          Length = 222

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYMLVAN 219


>gi|65320879|ref|ZP_00393838.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 225

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F ++G  +      +    L +    D+  ++  L         
Sbjct: 6   LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPE--IDGWS 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S VP+I ++       TL  F+ G D+ V KP   + ++AR   + +R    
Sbjct: 64  VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 N      I V    R   V GE   L  +E  +L YLM N+G  +++  +   +
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  V++HI KLR KL +K     + +   + Y  +
Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVXYKFE 224


>gi|330818567|ref|YP_004362272.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370960|gb|AEA62316.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 248

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D  +  +  +    D G ++E   +         +   DV  ++  L   G   L + 
Sbjct: 30  IEDDEITANEIVGELKDRGFAVEWVANGRDGMARALTDEYDVITLDRMLP--GVDGLTIV 87

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
             +R+   + P++ +S    +   +    +G DD + KP    E+ AR+  + RR + + 
Sbjct: 88  TTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSRSAP 147

Query: 124 NRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ET    GP+ +   GR     G    L   E R+LEY+M N G+ + +T +F A++G
Sbjct: 148 AQSETSLTVGPLALDLIGRKASRDGVEIALLPTEYRVLEYMMRNAGQTITRTMLFEAVWG 207

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ H+ +LRKK+        + + R  GY +
Sbjct: 208 -YHFDPGTNLIDVHMGRLRKKIDPPELAPMIRTVRGAGYIL 247


>gi|313123613|ref|YP_004033872.1| DNA-binding response regulator, ompr family (rec-whth domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280176|gb|ADQ60895.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 225

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +++  +         + GF+  +       ++R D+  ++  L    E   
Sbjct: 4   IWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALDNSRPDLVILDLMLPD--EDGS 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   +R+ S    +P+I  S   +    +   DSG DD + KP    E+++RV A+ RR
Sbjct: 62  EILHRLRSTSATEDLPVIVASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRR 121

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   ++ +   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I
Sbjct: 122 TNRKKEDKIDKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +       E   V+ H+  LR+KL        +++ R +GY 
Sbjct: 182 WETG-FYGETRTVDVHVRTLRQKLGEAG--KHIETVRGVGYR 220


>gi|297627027|ref|YP_003688790.1| Response regulator receiver [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922792|emb|CBL57370.1| Response regulator receiver [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 225

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 105/223 (47%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    +D    +   +G ++    + + E+ L    R     +   L+  G   +
Sbjct: 4   ILIIEDEESYRDAMSFMLDREGFAVAA--APDGEQGLAEFDRNGADLVLLDLMMPGLPGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR + 
Sbjct: 62  EVCKALRQRSDVPVIMVTARDSEVDKVVGLELGADDYVTKPFSQRELVARIRAVLRRGRA 121

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  E+G +R+  +  +  V+ E   L  +E  +LE L+ N G+ +++ Q+   ++
Sbjct: 122 EELVPDVLESGDVRMDVERHEVAVRDEPVRLALKEFELLELLLRNSGRVMSREQLIDRVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G  D   +   ++ H+ +LR K+  +      + + R LGY  
Sbjct: 182 G-SDYVGDTKTLDVHVKRLRAKIELDPSHPTALVTVRGLGYKF 223


>gi|90414318|ref|ZP_01222297.1| Response regulator [Photobacterium profundum 3TCK]
 gi|90324656|gb|EAS41203.1| Response regulator [Photobacterium profundum 3TCK]
          Length = 218

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++    +      G +++        E   ++       ++  L       L
Sbjct: 3   ILLVEDDVMLGKSMVTSLSRHGYTVDWLQQGNGVEVNLNTETFMAIILDLTLPDT--DGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +R A   +P++ ++    +   +   D G DD + KP    E+LAR+  + RR  
Sbjct: 61  EVLRRVRKAGHSLPILILTARDEIDDRVKGLDGGADDYLVKPFALEELLARLRVLIRRVS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ + E G + +     D   QG    L + E +IL  L+   G+ ++K  +   +  
Sbjct: 121 GHTDTQLEIGDLSISLKTNDVHYQGNPVKLTKNEFKILATLVTQSGRVLSKESL-QQVLH 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D+   +N +E HI  LRKK+    G   + + R +GY I+
Sbjct: 180 GWDDLASDNAIEVHIHNLRKKI----GGQLIKNIRGVGYIIE 217


>gi|150018594|ref|YP_001310848.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905059|gb|ABR35892.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++   +    + +  E L+    E +  I   ++      +
Sbjct: 7   ILVVDDEKDIREVIEIYLINEEFEV--ITACDGLEALEKLKNEAIDLIILDIMMPKLDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR   ++P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 65  RTCLKIREEKKMPIIMLSAKSEDSDKILGLNIGADDYVVKPFNPLELVARVKSQIRRTTS 124

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N   E          + + +  R+  V  +   L  RE  IL+ L  N G+ ++  QI+
Sbjct: 125 FNEPREENDDEICIDGLVINTANREVFVDDKFVRLTPREFEILKVLATNIGRVLSTEQIY 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++        +N V  HI  +R+K+  N      +     +GY ID
Sbjct: 185 ENVWDEP-FFNSDNTVAVHIRNIREKIEINPKEPKYIKLVWGVGYKID 231


>gi|332285068|ref|YP_004416979.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
 gi|330429021|gb|AEC20355.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
          Length = 227

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D       + G  ++   +      L  +   D+  ++  L        
Sbjct: 3   LLLVEDETKTGDYVRQGLVESGFVVDLVRTGLDGHHLALTGSYDLIILDVMLPDV--DGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A S  P++ ++   S++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVQALRDAKSSTPVLFLTARDSVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + +    R  + +     L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 APAFQDQLQIADLVLDIPRRRAQRKSVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV++  I +LR K+ +      + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFDPKLIHTVRGMGYMLDV 223


>gi|302542071|ref|ZP_07294413.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459689|gb|EFL22782.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
           ATCC 53653]
          Length = 238

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 92/237 (38%), Gaps = 24/237 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ---SSAREDVSAIEAFLIGKGE 58
            +L++D   V     A+    G  +    S E         + A   V  ++  L  +  
Sbjct: 3   LLLVEDDNHVAAALTAVLSRHGFDITHARSGEEALKALLPGAGAPFGVVLLDLGLPDQ-- 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR
Sbjct: 61  DGFEVCGRIRKLTATPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTMELLARIHAVSRR 120

Query: 119 LKVSNN---------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
              S++                   GP+ +    R   V G    L R+E  +L  L   
Sbjct: 121 TLPSDSGGGAGTEDSGEGPQPPLRLGPVTIELPTRQVSVDGATVSLTRKEFDLLALLAQR 180

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G    + QI S ++    E      +E HI+ LR KL        +++ R +GY +
Sbjct: 181 PGVVFRREQIISEVWRTSWEGTG-RTLEVHIASLRSKLHMPA---LIETVRGVGYRL 233


>gi|296134128|ref|YP_003641375.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032706|gb|ADG83474.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 237

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D    +F  +   ++        + +  +   D+  ++  L  K  + +
Sbjct: 3   LLLVEDEKRLADALAYIFKKNNYGIDVAYDGITGQEMAETGIYDLIILDRMLPKK--EGV 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + +R+   + P++ ++   +++  ++  D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  SVLKHLRSIGIKTPVLLLTARDAVEDRVEGLDAGADDYLVKPFATEELLARIRALARRQS 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + +   G + +     +     E   L  +E ++LE  M N G+ + K QI   ++
Sbjct: 121 ENFHSEKIRVGSLTLDPLHCEITCGDEKVRLTYKETQLLELFMRNSGQVITKEQILDRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GL D  VE N VE +I  LRKK+  +     +++ R +GY +
Sbjct: 181 GL-DSEVELNNVEIYIHYLRKKIVPEKSKVRLETVRGVGYCL 221


>gi|229126083|ref|ZP_04255105.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229143378|ref|ZP_04271809.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228640185|gb|EEK96584.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228657405|gb|EEL13221.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 242

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIMMP--KMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236


>gi|227885266|ref|ZP_04003071.1| response regulator [Escherichia coli 83972]
 gi|227837792|gb|EEJ48258.1| response regulator [Escherichia coli 83972]
 gi|307556495|gb|ADN49270.1| putative response regulator [Escherichia coli ABU 83972]
          Length = 239

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNV--NGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 65  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 124

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +        + +    R+  +  +   L  RE  +L +   +  +  ++  +
Sbjct: 125 AMGQNILLAGRLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPSEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|196047257|ref|ZP_03114472.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225863933|ref|YP_002749311.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196021882|gb|EDX60574.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225788837|gb|ACO29054.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 229

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 62  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V + +A T   GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHDEKAHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|15599970|ref|NP_253464.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa PAO1]
 gi|116052923|ref|YP_793240.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296391604|ref|ZP_06881079.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
 gi|9951041|gb|AAG08162.1|AE004891_4 PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa PAO1]
 gi|115588144|gb|ABJ14159.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 221

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  L+ DG  A    +G ++E        E    +   D+  ++  L  +    L
Sbjct: 3   ILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRR--SGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R      P++ ++    +   +   DSG DD + KP    E+ ARV A+ RR  
Sbjct: 61  DILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G +R+        + G+   L  RE  +L  L+ N GK +++ Q+  ++YG
Sbjct: 121 GRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   VE N +E H+  LR+KL    G   + + R +GY ID
Sbjct: 181 -WSGDVESNAIEVHVHHLRRKL----GNQLIRTVRGIGYGID 217


>gi|326801362|ref|YP_004319181.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326552126|gb|ADZ80511.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 231

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D++ +          DG  +   +  E    +      D+  ++  L   G   +
Sbjct: 5   ILVIEDQSKLASLIQRGLSADGYDVRIASDGELGLDMIYHNAFDLIVLDVMLP--GISGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +++R  +  VP++ ++   +    +   DSG DD + KP    E+ AR+  + RR  
Sbjct: 63  EVCQLLRKENNPVPILMLTALSATNNVVTGLDSGADDYMVKPFKFEELKARIRTLVRRAN 122

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +N +            + +  D R     G+   L   E R+LE++M N+ K + + +I
Sbjct: 123 GTNGQQNPASSTIRIMDLVLDMDARIATRGGKEIALTATEYRLLEFMMKNKNKVLTRIEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++ + +  +  NVV+ +++ LRKK+        + +   +GYSI
Sbjct: 183 LEHVWDI-NFNMGTNVVDVYVNYLRKKVDKGFDVKLIHTMIGVGYSI 228


>gi|312880968|ref|ZP_07740768.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
 gi|310784259|gb|EFQ24657.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
          Length = 235

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +E     +    +  +   D+  ++  L        
Sbjct: 6   ILVVEDERSIADLVAEALRRQGYRVETAGDGDQALEVAETTLPDLVILDLMLP--KLDGW 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR- 117
           E+ R +R      ++P+I ++     +  +   + G DD + KP    E+LARV A  R 
Sbjct: 64  EVCRRLREEETTRRIPIIMLTARRDEKDVVAGLELGADDYLRKPFSLAELLARVKAHLRA 123

Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +  + +     GP+ +     +  + G    L   E R+LE L+  +G+ V++ ++ +
Sbjct: 124 RAQDALGDEGIAVGPLTLEPRSGEVLLDGTPLDLSPVEYRLLETLVRGKGRLVSREELLA 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222
            ++G    A +   V+ HI +LR+K+         V + R  GY + W
Sbjct: 184 KVWGY--VAGDTRTVDVHIFRLRRKIEPDPEHPRLVHTVRGRGYRLLW 229


>gi|297201268|ref|ZP_06918665.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712870|gb|EDY56904.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 228

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 14/225 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V           G  +E  ++       +     DV  ++  L       L+
Sbjct: 4   LLVEDDEPVAQSLRRGLIRYGFEVEWVSTGAAALGHE--GPYDVVLLDLGLPDT--DGLD 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R    VP+I IS        +   + G DD V KP   RE++AR+ A+ RR +  
Sbjct: 60  VCRALRERGDVPIIVISARSDETDRVVGLELGADDYVTKPFGVREVIARIRAVMRRAQPR 119

Query: 123 NNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              A  GP      + +        + GE  PL  +E  +L +L    G  +++ QI  A
Sbjct: 120 TEVAAAGPDTYGSRLSIDRKAARVRLDGEEVPLAPKEYDLLAFLTEEPGALMSREQIMEA 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +       ++ H++ LR+KL    G   +++ R +G+ ++
Sbjct: 180 VWDA-NWFGPTKTLDVHVAALRRKLA---GAVVIEAVRGVGFRLE 220


>gi|145592903|ref|YP_001157200.1| two component transcriptional regulator [Salinispora tropica
           CNB-440]
 gi|145302240|gb|ABP52822.1| two component transcriptional regulator, winged helix family
           [Salinispora tropica CNB-440]
          Length = 227

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D    +   +G  +    +             D+  ++  L        E
Sbjct: 5   LVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLMLPE--MSGSE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R  S VP+I ++   S    +   + G DD V KP   RE++AR+ A+ RR    
Sbjct: 63  VCRQLRQRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRKSVE 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++        GP+R+  +     V G    LP +E  +LE L+ N G+ + + Q+   +
Sbjct: 123 TVESGAATLAAGPVRMDIERHVVTVDGGPVQLPLKEFELLELLLRNAGRVLTRGQLIDRV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKVEPEPSTPRHIVTVRGLGYKFE 226


>gi|163942544|ref|YP_001647428.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864741|gb|ABY45800.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 229

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++     F  +   +      +    L      D+  ++  L        
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIMLPE--LDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
            + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +      
Sbjct: 63  SVCRRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQA 122

Query: 117 --RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             + L+  ++      I V    R   V      L   E  IL Y M N+G  + + Q+ 
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--SKHITTVVRTGYKFEGN 228


>gi|308067409|ref|YP_003869014.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305856688|gb|ADM68476.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 226

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++     F  +   +    + +       S + D+  ++  +        E
Sbjct: 6   LLVEDEIRIREVIADYFKQNNWEVYEAGNGKDALIWLDSVQPDLIILDIMMPE--LDGWE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R+ S VP+I ++        +  F+ G DD V KP   + ++AR  A+ +R    
Sbjct: 64  VCRQVRSRSGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVEGH 123

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  ++    G   + +     EV      L  +E  +L  L+ N+G  +++  I + ++
Sbjct: 124 VQPESHILRFGSAILNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVISRDTILNRVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G+ D   +  VV++HI KLR KL        + +    GY  +
Sbjct: 184 GI-DFEGDTRVVDTHIKKLRSKLGR--ESRHIRTVFGTGYRFE 223


>gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 1629

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L      A+  +   ++E  +       L  +   D+  ++  L       +
Sbjct: 3   ILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPR--LDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R IR+   Q+P++ ++   S        D+G DD V KP    E++ARV A+ RR  
Sbjct: 61  SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G +++     +      +  L  +E  +LE  + +  +  + + I   I+ 
Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D   EE  V +HI  LR KLRN     D V++   +GY +
Sbjct: 181 YEDTPGEE-AVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRL 221



 Score = 72.6 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + +DD   +      L    G+ +   +              D+  ++  +       +E
Sbjct: 384 LAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYT--NGIE 441

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L +++R     S++P++ ++ +   +     F  G DD V+KPI   E++ R+     R+
Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLERV 501

Query: 120 KVSNNRAETGPI 131
           K+ +  +E+  I
Sbjct: 502 KLLHKVSESRGI 513



 Score = 51.4 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 1    MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
            + ++ DD  L++    +L    G  +    + +      S+   DV  ++  + G  G +
Sbjct: 1380 LVLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWE 1439

Query: 60   VLELPRIIRAHSQVPLIG 77
             + + +       +P++ 
Sbjct: 1440 TMAMLKESTETKHIPIVI 1457



 Score = 50.3 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 2    FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++++D A + + ++ LF      +E F++    E +  S   +   +   LI       
Sbjct: 1503 ILIVEDDADLAELFVTLFER--HDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGF 1560

Query: 62   ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNK-PIHHREILARVAAIYR 117
             +   ++ H     +P++  S     ++       G  + + K  +  +E   RV  + +
Sbjct: 1561 AVVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQ 1620

Query: 118  RLKVSNNR 125
            R+  +N R
Sbjct: 1621 RITPTNVR 1628


>gi|124266822|ref|YP_001020826.1| two-component response regulator [Methylibium petroleiphilum PM1]
 gi|124259597|gb|ABM94591.1| two-component response regulator [Methylibium petroleiphilum PM1]
          Length = 228

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + G  ++  +       L      D+  +++ L   G   L
Sbjct: 3   LLVVEDEVKLAEYLRKGLTESGYVVDVAHDGIDGLHLAMEGNYDLLVLDSMLP--GIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R     P++ ++    +   +     G DD + KP    E+ AR+  + RR   
Sbjct: 61  ALLAALRRSKHTPVLMLTARVHVDDRVRGLQGGADDYLTKPFAFTELTARIQVLLRRAAP 120

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S + +E        + V    R     G+   L  +E  +L  LM  +G+ +++T++ + 
Sbjct: 121 SQSASEPTLLRIADLEVDLLRRKAVRAGQRLDLTAKEFSLLALLMRRQGEVLSRTELAAQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +   E NVVE  I +LR K         + + R +GY ++
Sbjct: 181 VWDM-NYDSETNVVEVAIRRLRNKFDAPFEQVLLHTVRGMGYVLE 224


>gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
 gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
          Length = 236

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A++ D        +G                +S   DV  ++  +       LE
Sbjct: 14  LVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPR--MDGLE 71

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
               +RA   ++P++ ++   ++   +    +G DD V KP    E+ ARV  + RR   
Sbjct: 72  TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGR 131

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + ++   +   + +  D  D    GE   L   E  +L YLM N G  ++K +I  A+
Sbjct: 132 TQQAASTVLQVADLTLDMDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+        + + R  GY +
Sbjct: 192 W-SYDFGGQVNVVELYISYLRKKIDADR-PALIRTVRGAGYIM 232


>gi|291516211|emb|CBK69827.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
          Length = 240

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 21/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
             ++DD   + +    +  ++G  ++   + L   E      + D+  ++  L   G   
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEIFPIV-KPDLILLDVMLP--GLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R IRA S VP+I ++        +   ++G DD V KP    E+LAR+ A +R  K
Sbjct: 61  TGVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAK 120

Query: 121 VSN---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
            +                N  E G I +          G+   L   E  +L  L A  G
Sbjct: 121 PAAEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAG 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           + ++++ +   ++G ++ + +  +V  H+ +LR K+ +      +  + R +GY  
Sbjct: 181 EAISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235


>gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 223

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L       DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALAKWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R  +  +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+     G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKAEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL N    + + +   +GY ID 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKIDC 223


>gi|229156833|ref|ZP_04284920.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228626753|gb|EEK83493.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 225

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G ++  F + + +   +   +E++      ++       
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFTV--FEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|150395862|ref|YP_001326329.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027377|gb|ABR59494.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 233

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D           F + G+  +  +  E   ++ S    DV  ++  L  +    L
Sbjct: 7   ILIVEDDLEAAAYLAKAFREAGIVCDHASDGEAGLFMASENAYDVLVVDRMLPRR--DGL 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R      P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 65  SLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +         QG+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 125 APEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 185 D-YHFDPQTNVIDVHVSRLRSKIEKDFDPPLLRTIRGAGYMI 225


>gi|332760827|gb|EGJ91115.1| transcriptional activator protein irlR [Shigella flexneri 4343-70]
 gi|333007818|gb|EGK27294.1| transcriptional activator protein irlR [Shigella flexneri K-218]
          Length = 227

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R   + G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTLSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407]
 gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407]
 gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC
           H10407]
          Length = 240

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLVEDDYDIATLLRLNLQDEGYQIVHEADGAKSLALLEKQVWDAVLLDLMLPNV--DGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R IR  +  +P+I IS   S    +   + G DD + KP   +E++ARV A++RR  
Sbjct: 65  EICRRIRQMAGYLPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALFRRQE 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +++         + +    R+  + GE+  L  RE  +L +   + G+  ++  +
Sbjct: 125 AMGQNIRLEGGLIRCHGLHIDPLAREVRLCGELIDLTPREFDLLYWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +    + + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRTKIEHDAAEPEIILTVWGKGYKF 231


>gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 222

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +         S    D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGVEGLHRASEGAYDLVILDIMLP--GMNGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA    VP++ ++         +  D+G DD + KP  +  ++ARV A+ RR  
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRH 120

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S   +   E G +R+ +  R   +  +   L  +E  +LE L+   G+ V+K +I   +
Sbjct: 121 ASGGASPVHEVGELRLDTAARRVFLTEDEISLTTKEFSVLEQLVLRAGEVVSKAEILEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  F    + N+VE +IS LR+KL    G   + + R  GY ++
Sbjct: 181 WD-FAYDGDPNIVEVYISTLRRKL----GPTLIKTVRGAGYRLE 219


>gi|159904286|ref|YP_001551630.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159889462|gb|ABX09676.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 269

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V    +      G  +      E    L      D+  ++  L        
Sbjct: 27  ILVVDDEPAVLKVLVTRLELAGYHVISAKDGEEALELFHRESPDLVVLDVMLP--KLDGF 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S VP+I +S   ++   +   D G DD ++KP   +E+ AR+A I RR+  
Sbjct: 85  AVCRRIRGESIVPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 144

Query: 121 ------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                       V     + G + V ++ R     GE   L   E  +LE L  + GK V
Sbjct: 145 GASSVAEPREIPVGQGVMKLGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFRDPGKVV 204

Query: 169 AKTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GYS
Sbjct: 205 PRAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYS 257


>gi|126650356|ref|ZP_01722584.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593006|gb|EAZ86988.1| two-component response regulator [Bacillus sp. B14905]
          Length = 241

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +   +++  ++ +    L      D+  ++  L       
Sbjct: 7   ILIVDDEVGILKLLEITLRKENFINIDAASTGKDTLQLVKENHYDIILLDIMLPD--ISG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            EL   IR H+  P+I +S   +    L     G DD + KP +  E++AR+  I RR  
Sbjct: 65  FELCTEIRKHTNTPIIFVSARSTDFDKLTGLGIGGDDYITKPFNPLEVVARIKVILRRQK 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  +++ + G   +  +     V  ++     +E  +L +   N  +    +Q+
Sbjct: 125 MYESSHQQQSSKFDFGYFALNPESATLIVNNQLVDCTAKELELLHFFCKNPNRIFTTSQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +  ++G  D   EE  V  HISKLRKKL +       + + R +GY  
Sbjct: 185 YEFVWGN-DVYGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKF 231


>gi|86356926|ref|YP_468818.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281028|gb|ABC90091.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 223

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPE--MDGV 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    R A   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIICGPVRLDTKSSKATVNGAALKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|126650368|ref|ZP_01722596.1| hypothetical protein BB14905_18480 [Bacillus sp. B14905]
 gi|126593018|gb|EAZ87000.1| hypothetical protein BB14905_18480 [Bacillus sp. B14905]
          Length = 231

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 94/228 (41%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G       +        +  + ++  ++  L       L
Sbjct: 6   ILIIEDDEPIADLLSYGLMMEGFHTRIETTGSSGLSAIAIYKPNLLLLDWMLPDC--SGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +     +P++ I+    +   +   + G DD + KP   RE++AR+  I+RRL  
Sbjct: 64  DICKQVTTTYNIPILMITAKSDITDKVIGLEYGADDYITKPFDLREVVARIRTIFRRLDQ 123

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +N+              I +  + R          L  +E  +L  L+  +GK   ++++
Sbjct: 124 TNSLEKQEKSQDIRFKNILILPEERLVIKDDINIELTPKEYDLLMTLIGQKGKIFTRSEL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G +D   +   V++HI +LRKKL      D + +   +GY  +
Sbjct: 184 LDLVWG-YDFVGDTRTVDTHIQRLRKKLD---AGDIITTVFGIGYKFE 227


>gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 268

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 16/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V+   +      G  +      E    L    + D+  ++  L         
Sbjct: 27  LVVDDEATVRRVLVMRLQLAGYRVVCAEDGEQALSLFHDEQPDLVVLDVMLP--KLDGFA 84

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   
Sbjct: 85  VCRRLRAESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144

Query: 123 NNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +  AE             G + V ++ R    +GE   L   E  +LE L  + G+ V +
Sbjct: 145 SAAAESRDVPAGQGVLRVGDLVVDTNRRQVTREGERIGLTYTEFSLLELLFRDPGRVVPR 204

Query: 171 TQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            +I   ++G     A +  VV+ ++++LR KL  +    + + + R  GY
Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254


>gi|126463834|ref|YP_001044947.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105645|gb|ABN78175.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 220

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ DG        G   E   +LE       + R +   ++  L       L
Sbjct: 3   ILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPD--GSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL   +RA    VP++ ++    L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELLAELRAAREPVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  R E   + +     +    G    L  RE  +L  LMA+    ++K QI   +YG
Sbjct: 121 ALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E H+ KLR KL    G   +++ R +GY +
Sbjct: 181 -WQEEIESNAIEVHVHKLRAKL----GHGFIETVRGVGYRL 216


>gi|218901847|ref|YP_002449681.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539651|gb|ACK92049.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 225

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPT--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLCHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|170019594|ref|YP_001724548.1| DNA-binding transcriptional regulator BaeR [Escherichia coli ATCC
           8739]
 gi|169754522|gb|ACA77221.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
          Length = 240

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEETDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|119489672|ref|ZP_01622431.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119454409|gb|EAW35558.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 226

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 111/234 (47%), Gaps = 27/234 (11%)

Query: 2   FVLIDD---------RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            +L+DD         RAL ++GY     D+G +  G+N       L +    D+  ++  
Sbjct: 3   ILLVDDEVELTLPLSRALTREGYAVDVADEGAT--GYN-------LATQHHYDLLILDWM 53

Query: 53  LIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L  +    +E+ + +R  ++Q+P++ ++   +L   ++  D+G DD + KP   RE+LAR
Sbjct: 54  LPHQ--SGVEMCQQLRLKNNQIPILFLTAKDTLNDRVEGLDAGADDYLVKPFELRELLAR 111

Query: 112 VAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           V A+ RR        +N+R +   + +  + +     G +  L  +E ++LEY M + G+
Sbjct: 112 VRALLRRPPTLESPAANSRLQIFNLELDIENQLAYRNGRIIELSEKECQLLEYFMRHSGQ 171

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   QI+  ++   D+    NV+ + I  LR+K+ +      + +    GY  
Sbjct: 172 LLTHQQIYQHLWADSDQ-PSSNVLAAQIRLLRRKIEDPKERQLIHTVYRKGYRF 224


>gi|16273290|ref|NP_439531.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae Rd KW20]
 gi|68250104|ref|YP_249216.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 86-028NP]
 gi|145629534|ref|ZP_01785332.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 22.1-21]
 gi|145632874|ref|ZP_01788607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 3655]
 gi|145634311|ref|ZP_01790021.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittAA]
 gi|145639024|ref|ZP_01794632.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittII]
 gi|148826862|ref|YP_001291615.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittGG]
 gi|229844161|ref|ZP_04464302.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 6P18H1]
 gi|229846768|ref|ZP_04466875.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 7P49H1]
 gi|260580787|ref|ZP_05848613.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|260582709|ref|ZP_05850497.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|319897031|ref|YP_004135226.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Haemophilus influenzae F3031]
 gi|1172480|sp|P45189|PHOB_HAEIN RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|1574213|gb|AAC23025.1| phosphate regulon transcriptional regulatory protein (phoB)
           [Haemophilus influenzae Rd KW20]
 gi|68058303|gb|AAX88556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 86-028NP]
 gi|144978377|gb|EDJ88141.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 22.1-21]
 gi|144986530|gb|EDJ93096.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 3655]
 gi|145268291|gb|EDK08285.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittAA]
 gi|145271996|gb|EDK11905.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittII]
 gi|148718104|gb|ABQ99231.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittGG]
 gi|229810257|gb|EEP45976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 7P49H1]
 gi|229813155|gb|EEP48843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 6P18H1]
 gi|260092604|gb|EEW76541.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|260094275|gb|EEW78175.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|309750983|gb|ADO80967.1| Phosphate regulon transcriptional regulatory protein [Haemophilus
           influenzae R2866]
 gi|317432535|emb|CBY80895.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3031]
          Length = 231

 Score =  221 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            ++++D   +++            +    + +F+  +        +  ++  L   G   
Sbjct: 5   ILIVEDECAIREMIALFLSQKYYDV--IEASDFKTAINKIKENPKLILLDWMLP--GRSG 60

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           ++  + I+     + +P+I ++   + +  +   ++G DD + KP   + +LAR+ A++R
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120

Query: 118 RLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R+    ++  +   + +  + +    Q +   L   E ++L + M +  K  ++ Q+ + 
Sbjct: 121 RIYEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNR 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+   D  VE   V+S+I +LR+ L        + + R  GY  
Sbjct: 181 IW-HNDLEVEYRTVDSYIRRLRRNLAPFQCEHYIQTVRGSGYRF 223


>gi|332561089|ref|ZP_08415407.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332274887|gb|EGJ20203.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 220

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ DG        G   E   +LE       + R +   ++  L       L
Sbjct: 3   ILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPD--GSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL   +RA    VP++ ++    L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELLAKLRAAREPVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  R E   + +     +    G    L  RE  +L  LMA+    ++K QI   +YG
Sbjct: 121 ALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E H+ KLR KL    G   +++ R +GY +
Sbjct: 181 -WQEEIESNAIEVHVHKLRAKL----GHGFIETVRGVGYRL 216


>gi|325262406|ref|ZP_08129143.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032238|gb|EGB93516.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 272

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  DD A + D        + + +    + +  E ++    E V  +   ++  G    
Sbjct: 45  ILAADDEAELLDVLELYLERENIGIR--KAKDGIEAMEIFRSEKVHLVLLDIMMPGLDGY 102

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R IR  S++P I ++        +   + G DD + KP +  E++AR+ A  RR   
Sbjct: 103 AVLRKIRETSRIPAIMLTAKSEDYDKILGLELGADDYITKPYNPLEVVARIKAQLRRNYD 162

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +        +++  +  + E+ G    L   E +IL   M   G+   K QIF
Sbjct: 163 YREETGQNREVLRLRGLQLCVEEGNVELDGRAVELTSTEFKILRLFMGQPGRIFTKQQIF 222

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             ++       ++N V  HIS LR KL    G  P + + + LGY I+
Sbjct: 223 ENVW-EDSYEGDDNTVMVHISNLRGKLEQSGGQPPQIKTVKGLGYKIE 269


>gi|228946856|ref|ZP_04109158.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812843|gb|EEM59162.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 225

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +  F + + +   +   +E++      ++       
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKV--FEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|197119976|ref|YP_002140403.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197089336|gb|ACH40607.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 224

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       ++G S++  N  E    L  +    +  ++  L  +G    
Sbjct: 3   ILIVEDEQKAANYLKKGLSENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRG--GW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA  + VP+I +S    +   +   + G DD + KP    E+LAR+  I RR  
Sbjct: 61  SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRYP 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  + + +   + +          G    L  +E ++L  ++  RG+ +++T I   I+G
Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLHRRGEVLSRTTISEQIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVV+  I +LRKK+ +      + + R +GY +D
Sbjct: 181 I-NFDTDTNVVDVAIRRLRKKVDDPFPVKLIQTIRGVGYVLD 221


>gi|118477427|ref|YP_894578.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|229090987|ref|ZP_04222211.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|229184209|ref|ZP_04311418.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|118416652|gb|ABK85071.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|228599324|gb|EEK56935.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228692388|gb|EEL46123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GMDGF 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 65  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V + +A T   GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKAHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|126700190|ref|YP_001089087.1| two-component response regulator [Clostridium difficile 630]
 gi|115251627|emb|CAJ69460.1| Two-component response regulator [Clostridium difficile]
          Length = 238

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 93/235 (39%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G ++  F      E L+    +++      ++      +
Sbjct: 6   ILVVEDEKEIADAIEIYLLNQGYNV--FKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            L   +R +   P+I +S        +   + G DD V KP    E+LARV +  RR   
Sbjct: 64  TLTMKLRENYNFPVIMLSAKSEEVDKMMGLNIGADDYVTKPFKPLELLARVNSQLRRYTK 123

Query: 120 ------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                       +  ++    G + +  + ++  + G+       E +IL  LM N G+ 
Sbjct: 124 YLNMVGNKEQKVESDDSVFAIGGLELNENTKEVSIDGKYIKTTPIEFKILSLLMRNAGRV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +  +I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 184 FSADEIYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 236


>gi|50842818|ref|YP_056045.1| putative response regulator [Propionibacterium acnes KPA171202]
 gi|289425213|ref|ZP_06426990.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|295130871|ref|YP_003581534.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|50840420|gb|AAT83087.1| putative response regulator [Propionibacterium acnes KPA171202]
 gi|289154191|gb|EFD02879.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|291375364|gb|ADD99218.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313764116|gb|EFS35480.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771854|gb|EFS37820.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313792423|gb|EFS40518.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313801533|gb|EFS42778.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313809578|gb|EFS47314.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313813262|gb|EFS50976.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313816381|gb|EFS54095.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313827322|gb|EFS65036.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313829983|gb|EFS67697.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313833010|gb|EFS70724.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314914892|gb|EFS78723.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918039|gb|EFS81870.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314919689|gb|EFS83520.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314930068|gb|EFS93899.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956471|gb|EFT00759.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314957307|gb|EFT01410.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314963204|gb|EFT07304.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314967673|gb|EFT11772.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314972933|gb|EFT17030.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314975639|gb|EFT19734.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314984091|gb|EFT28183.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315078181|gb|EFT50226.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315080885|gb|EFT52861.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315095758|gb|EFT67734.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315098866|gb|EFT70842.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101706|gb|EFT73682.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315109432|gb|EFT81408.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327329939|gb|EGE71693.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL097PA1]
 gi|327330096|gb|EGE71849.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL096PA2]
 gi|327442666|gb|EGE89320.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327443798|gb|EGE90452.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327452406|gb|EGE99060.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327452714|gb|EGE99368.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327453471|gb|EGF00126.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328752586|gb|EGF66202.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328753863|gb|EGF67479.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328761465|gb|EGF74990.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL099PA1]
          Length = 236

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S            +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLP--GRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
            + + IR  S VP+I ++        +    +G DD V KP    E++AR+ A  R    
Sbjct: 68  RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G +    +  +V  H+ +LR K+ RN      + + R +GY I+
Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230


>gi|148548249|ref|YP_001268351.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148512307|gb|ABQ79167.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 220

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G       +G +L+                 D+  ++  L       +
Sbjct: 3   LLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLLILDLGLPR--MDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL R +RA    +P++ ++   +L   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   + +    +     G    L  +E  +L  L+A+ GK   + ++   +YG
Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVHYNGVDVVLTPKEYVLLHELLAHPGKVFTRERLTQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +DE  E N +E +I  LRKKL N L    + + R +GY ++ 
Sbjct: 181 -WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVEV 218


>gi|312959649|ref|ZP_07774166.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311286366|gb|EFQ64930.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 226

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+            + G + E        + L  +   D+  ++  L   G    
Sbjct: 3   LLIVEDQPKTGHYLRQGLAEAGFTTELVADGTSGQHLALTGDYDLLILDVMLP--GRDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +R A   +P++ ++   +++  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQAVRSAGLDIPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   +   +R+    R  E  G+   L  +E  +LE L+  +G+ + KT I S ++
Sbjct: 121 STPQDTALQLADLRLDLIRRRVERDGQRIDLTAKEFALLELLLRRQGEVLPKTLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N++E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNIIEVAIRRLRLKVDDNFPNKLIHTVRGMGYVLE 222


>gi|168178082|ref|ZP_02612746.1| transcriptional regulatory component of sensory transduction system
           [Clostridium botulinum NCTC 2916]
 gi|170755464|ref|YP_001780337.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226947966|ref|YP_002803057.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|169120676|gb|ACA44512.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|182671281|gb|EDT83255.1| transcriptional regulatory component of sensory transduction system
           [Clostridium botulinum NCTC 2916]
 gi|226843975|gb|ACO86641.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 232

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   + +G        G  ++   +    E L  + + D+  ++  L        
Sbjct: 4   IFFVEDDLSLINGLSFAIKKQGYEIDVARTSLEAEALWKNGKYDLVILDVSLPD--GSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L + IR  S+VP++ ++        +   D G DD + KP      ++R+ A+ RR   
Sbjct: 62  DLCKKIRKTSKVPIMFLTAADEETDIIMGLDIGGDDYITKPFKLAVFMSRINALLRRSNN 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++    +  I V     +    GE   L   E ++L   M N    ++  QI S ++
Sbjct: 122 FNQADTELNSNGINVQLLKGEVYKNGEQLDLTASEYKLLCMFMENPDIVLSPEQILSRLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS---IDW 222
              +  ++ N +  +I +LR K+ +       + + R +GY    +DW
Sbjct: 182 DCNENYIDNNTLTVYIRRLRTKIEDNPGEPQKIVTVRRMGYKWSTVDW 229


>gi|229089713|ref|ZP_04220974.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693612|gb|EEL47314.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDEARHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|226311053|ref|YP_002770947.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094001|dbj|BAH42443.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 240

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A +++       + G +   + +    + L   +   +  + A ++       
Sbjct: 14  ILIIDDEAQIRELLSIYLKNYGFA--TYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL + IR  S+VP + +S        +     G DD V KP +  E+++RV A++RR+  
Sbjct: 72  ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDV 131

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K ++   + G + +          G+   +   E +IL  LM + G+   K  I+
Sbjct: 132 FSKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKASIY 191

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++G  +   +EN++  +ISKLR+K+ +       + + R LGY  +
Sbjct: 192 EHVWGQ-EYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFE 238


>gi|209921602|ref|YP_002295686.1| DNA-binding transcriptional regulator BasR [Escherichia coli SE11]
 gi|256019757|ref|ZP_05433622.1| DNA-binding transcriptional regulator BasR [Shigella sp. D9]
 gi|331675637|ref|ZP_08376384.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA280]
 gi|332280893|ref|ZP_08393306.1| transcriptional regulatory protein [Shigella sp. D9]
 gi|56540601|gb|AAV92754.1| PmrA [Escherichia coli]
 gi|56540609|gb|AAV92758.1| PmrA [Escherichia coli]
 gi|56540611|gb|AAV92759.1| PmrA [Escherichia coli]
 gi|56540653|gb|AAV92780.1| PmrA [Escherichia coli]
 gi|209914861|dbj|BAG79935.1| two-component response regulator [Escherichia coli SE11]
 gi|284924201|emb|CBG37301.1| two-component response regulator [Escherichia coli 042]
 gi|324017155|gb|EGB86374.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|331067245|gb|EGI38653.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA280]
 gi|332103245|gb|EGJ06591.1| transcriptional regulatory protein [Shigella sp. D9]
          Length = 222

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMSGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYMLVAN 219


>gi|163938495|ref|YP_001643379.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860692|gb|ABY41751.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 3   LLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPE--MDGF 59

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220


>gi|229012628|ref|ZP_04169801.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228748651|gb|EEL98503.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +       +    +  S   D+  ++  +        
Sbjct: 13  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPI--MDGW 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 71  TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 130

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G + +           E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 131 IGSTQKIHFGNVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 191 I-DYAGDDRTVDVHIKRLRERFATTPDF-RIETVRGLGYRLEV 231


>gi|281355652|ref|ZP_06242146.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281318532|gb|EFB02552.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 222

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A   +  +  F   G             +   SA  D + I+  L        
Sbjct: 3   ILLIEDDAKTAEIILKGFQQAGFETCHAADGLDGLFKAKSALFDAAVIDVMLP--KLNGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA   ++P+I +S   S+++ +   + G DD + KP    E++ARV A  RR  
Sbjct: 61  TVIEELRAAGLKLPIIVLSAKDSVESKITGLEKGGDDYLAKPFSMAELIARVHAQLRRAS 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    R     GE   L   E ++LEYLM N+G+ V+K  I   ++
Sbjct: 121 CAAETTVLTVEDLTLDLISRKVVRGGERIELQPLEYQLLEYLMRNKGRVVSKNTIMEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +      N+VES + +LR+K+        + + R  GY ++
Sbjct: 181 -EYHFDTRTNIVESRVCRLREKIDKPFARKLIRTVRGFGYVLE 222


>gi|118477336|ref|YP_894487.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416561|gb|ABK84980.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 247

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++  +       +
Sbjct: 21  ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPH--MDGI 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 79  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A   +     +I
Sbjct: 139 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEI 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 199 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246


>gi|15832141|ref|NP_310914.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. Sakai]
 gi|168750408|ref|ZP_02775430.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757981|ref|ZP_02782988.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761825|ref|ZP_02786832.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769836|ref|ZP_02794843.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775469|ref|ZP_02800476.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782366|ref|ZP_02807373.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788752|ref|ZP_02813759.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC869]
 gi|168799035|ref|ZP_02824042.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC508]
 gi|195938273|ref|ZP_03083655.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806650|ref|ZP_03248987.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817189|ref|ZP_03258281.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820121|ref|ZP_03260441.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398758|ref|YP_002271322.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7
           str. EC4115]
 gi|217329588|ref|ZP_03445667.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           TW14588]
 gi|254793864|ref|YP_003078701.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. TW14359]
 gi|261225071|ref|ZP_05939352.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257583|ref|ZP_05950116.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O157:H7 str. FRIK966]
 gi|13362356|dbj|BAB36310.1| transcriptional response regulatory protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|187768926|gb|EDU32770.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015386|gb|EDU53508.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000071|gb|EDU69057.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355122|gb|EDU73541.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361284|gb|EDU79703.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367779|gb|EDU86195.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189371573|gb|EDU89989.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC869]
 gi|189378506|gb|EDU96922.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC508]
 gi|208726451|gb|EDZ76052.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730808|gb|EDZ79498.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740244|gb|EDZ87926.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160158|gb|ACI37591.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7
           str. EC4115]
 gi|209747942|gb|ACI72278.1| transcriptional response regulatory protein [Escherichia coli]
 gi|209747944|gb|ACI72279.1| transcriptional response regulatory protein [Escherichia coli]
 gi|209747946|gb|ACI72280.1| transcriptional response regulatory protein [Escherichia coli]
 gi|217317356|gb|EEC25785.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593264|gb|ACT72625.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O157:H7 str. TW14359]
 gi|320191754|gb|EFW66402.1| Response regulator BaeR [Escherichia coli O157:H7 str. EC1212]
 gi|320641378|gb|EFX10833.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. G5101]
 gi|320646748|gb|EFX15635.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H- str. 493-89]
 gi|320652025|gb|EFX20378.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H- str. H 2687]
 gi|320668107|gb|EFX34986.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326338436|gb|EGD62264.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1044]
 gi|326347041|gb|EGD70774.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1125]
          Length = 240

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|157693669|ref|YP_001488131.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682427|gb|ABV63571.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 231

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +    + E        +  D+  ++  +   G   +
Sbjct: 5   ILVVEDDQDIGDLLQESLTRAGYEVLRAMNGEQALKFVDDSL-DLVILDVMMP--GLSGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +RA S VP++ ++   S     +   +G DD + KP    E+ ARV A  RR  V
Sbjct: 62  ETCQQMRASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYTV 121

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E        G +RV  +  +   + +   L   E R+L+ LM+ R K  +   I+
Sbjct: 122 YQEKKEQEETFLVGGKLRVSEEFNEVWKENQQIKLSDLEYRMLKLLMSRRNKIFSAQNIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +++G        N V  HI KLR K+ +       + ++   GY  
Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRAKIEDDPARPFYIKTEWGRGYRF 228


>gi|113972144|ref|YP_735937.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|113886828|gb|ABI40880.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
          Length = 227

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        D   S++  +  E   +       D + I+  L       +
Sbjct: 3   LLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLYQAIEYNYDAAIIDVGLP--KLDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L R +R   +  P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRVREKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     GP  + +   +     E+  L   E ++ E  M ++G+  +KT +   IY 
Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +LRKKL     ++ +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|218702777|ref|YP_002410406.1| DNA-binding transcriptional regulator BasR [Escherichia coli IAI39]
 gi|300940585|ref|ZP_07155153.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|331650141|ref|ZP_08351214.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M605]
 gi|56540585|gb|AAV92746.1| PmrA [Escherichia coli]
 gi|56540587|gb|AAV92747.1| PmrA [Escherichia coli]
 gi|56540591|gb|AAV92749.1| PmrA [Escherichia coli]
 gi|56540593|gb|AAV92750.1| PmrA [Escherichia coli]
 gi|56540595|gb|AAV92751.1| PmrA [Escherichia coli]
 gi|56540639|gb|AAV92773.1| PmrA [Escherichia coli]
 gi|56540641|gb|AAV92774.1| PmrA [Escherichia coli]
 gi|218372763|emb|CAR20641.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli IAI39]
 gi|281181203|dbj|BAI57533.1| two-component response regulator [Escherichia coli SE15]
 gi|300454642|gb|EFK18135.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|330908446|gb|EGH36965.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           AA86]
 gi|331041086|gb|EGI13243.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M605]
          Length = 222

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYMLVAN 219


>gi|15802560|ref|NP_288587.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 EDL933]
 gi|12516285|gb|AAG57142.1|AE005434_6 transcriptional response regulatory protein (sensor BaeS)
           [Escherichia coli O157:H7 str. EDL933]
          Length = 240

 Score =  220 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEXRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|323527265|ref|YP_004229418.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384267|gb|ADX56358.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 267

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR   +  +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLE 219


>gi|187932476|ref|YP_001887260.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187720629|gb|ACD21850.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 236

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G +     +   EE L     +++  +   ++      +
Sbjct: 7   ILIVDDEKEIRDLVEIYLKSEGYA--TVKACNGEEALNIIREQNIDLVILDVMMPKLNGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR   ++P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 65  DTCLKIREEREMPIIMLSAKSEGIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYK 124

Query: 122 SNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N +            E   + +  +  +  +   +  L   E  IL  L  NRGK  + 
Sbjct: 125 FNTKHMEDEKEEESIIEIDELIINLETHEVILSNNLVKLTPTEFDILLLLSKNRGKVFSI 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             I+ +++   +    +N V  HI K+R+K+  +      + +   +GY I+
Sbjct: 185 ENIYESVWNQ-EFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIE 235


>gi|218440560|ref|YP_002378889.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173288|gb|ACK72021.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 246

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     S +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDDRTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +     +   L   E  +L  L+   G+ V+ + 
Sbjct: 122 TDRIPQAAKHSEILNYGPLTLVPERFEAIWFNKTVKLTHLEFELLHCLLQRHGQTVSPSD 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILKEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|152971070|ref|YP_001336179.1| DNA-binding transcriptional regulator BaeR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150955919|gb|ABR77949.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 240

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G +    N  +            +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLQAAGYAPALINHGDKVLPYVRQTPPHLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +        P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRDLQALDARSPLIVDESRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL         + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWEAD 235


>gi|154483735|ref|ZP_02026183.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC
           27560]
 gi|149735226|gb|EDM51112.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC
           27560]
          Length = 225

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 98/226 (43%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            +++DD   + D   + F       +   +   +E L+  A + D+  ++  +   G   
Sbjct: 7   LLIVDDERGIVDMIQSYFQ---TQYDILTAYSGQEALKKVACKPDLILLDINMP--GMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR H   P++ ++        +  F +G DD + KP    E+ AR+AA  RR +
Sbjct: 62  LTVCQQIREHIACPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHLRREQ 121

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N +     G + +    R   +  +  PL +RE  I+E L  N G+   + +I+  +
Sbjct: 122 RRQNNSAVRFFGELILDYSARTVTINNQNIPLSKREFEIVELLSLNAGQVFDRERIYELV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +GL D     + +  HI K+R K       + +++    GY   WN
Sbjct: 182 WGL-DGDGNSDTIMEHIRKIRAKFAAHTLHNYIETVWGCGYR--WN 224


>gi|159898879|ref|YP_001545126.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891918|gb|ABX04998.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 231

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A +++   +   ++G ++    +     ++    + D+  ++  +   G   L
Sbjct: 5   ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG--GL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +  R     ++ P+I ++        +   + G DD + KP + RE++ARV A+ RR   
Sbjct: 63  DFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYK 122

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +    G I +        V  +   L   E  IL  LMA+ G   ++  +     
Sbjct: 123 AQPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDRTS 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G       E  ++ HI  LR K+  +      +++   +GY  
Sbjct: 183 GQA-YEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRF 224


>gi|330981352|gb|EGH79455.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 222

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++            ++   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGATEPYDLIVLDLGLP--GMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R+     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+KL    G   V+++R  GY
Sbjct: 181 DGENE-RDSNVIEVHVNHLRRKL----GRAVVETRRGQGY 215


>gi|330949891|gb|EGH50151.1| response regulator protein [Pseudomonas syringae Cit 7]
          Length = 220

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +G       +G +++             S   D++ ++  L        
Sbjct: 3   LLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPT--LSGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R + S +P++ ++   + +  +   DSG DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRRSA 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   IR+    +          L  +E ++L  L++  G+ + + ++   +YG
Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++E  E N +E HI  LRKK  + L    + + R  GY ++
Sbjct: 181 -WNEEAESNTLEVHIHHLRKKFSSTL----IRTIRGGGYLVE 217


>gi|326319003|ref|YP_004236675.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375839|gb|ADX48108.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 248

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +     A    DG+     +       L    + D+  ++  L   G   
Sbjct: 13  LVLVVEDEPGIATILSAYLQRDGLRAHQAHDGLEALRLFRQLKPDMVLLDIHLP--GMDG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L R IR   Q P+I ++        L     G DD V KP    E++ARV A+ RR++
Sbjct: 71  LDLLRAIREDGQTPVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVLRRVQ 130

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGE-----VFPLPRRERRILEYLMANRGKRV 168
                   +  R   G I +  +       G+       PL   E R+L  L A   +  
Sbjct: 131 AQPSAPARAAQRIRVGRIEIDQEAHAAFAHGDDGRAVPLPLTLTEYRLLACLAAQPRRCF 190

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ +      L +    + V++SH+SKLR+KL+     + +++ R +GY +
Sbjct: 191 SRSHLIEHC--LPESDALDRVIDSHLSKLRRKLQQAGQGELIETVRGIGYRL 240


>gi|228919426|ref|ZP_04082791.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840213|gb|EEM85489.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 228

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +  + +  D+   ++   + E   +L      D   ++  +   G    
Sbjct: 8   LLVIEDTTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMP--GMDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|82699504|ref|YP_414078.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|189023833|ref|YP_001934601.1| transcriptional regulator [Brucella abortus S19]
 gi|237815071|ref|ZP_04594069.1| Transcriptional activator protein copR [Brucella abortus str. 2308
           A]
 gi|260545665|ref|ZP_05821406.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|82615605|emb|CAJ10592.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|189019405|gb|ACD72127.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|237789908|gb|EEP64118.1| Transcriptional activator protein copR [Brucella abortus str. 2308
           A]
 gi|260097072|gb|EEW80947.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
          Length = 235

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S +     E    L  +   DV  ++  L  +    L
Sbjct: 3   ILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKR--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA   + P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +         Q     L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 PREVDTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEKGFDEPLLHTVRGAGYML 221


>gi|150016678|ref|YP_001308932.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903143|gb|ABR33976.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 89/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G   E          L  +   D+  ++  L   G+   
Sbjct: 4   ILIIEDDESIAELERDYLEITGFKTEIAQDGYKGLDLALNEEFDLILLDVMLP--GKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IRA  ++P++ ++        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  KVCQEIRAVKEIPILMVTAKKEDIYKIQGLGIGADDYIVKPFSPSELVARVNAHISRYER 121

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       +    G I++    R   +         +E  +L +L +N     +K 
Sbjct: 122 LTTIEKNSDNEKSSIIIGRIKILLKARRVYIGENEVKFANKEFELLMFLASNPNIVFSKD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +   I+G  +   + + +  HI+++R+K+  +    + +++    GY  +
Sbjct: 182 TLLDRIWGE-ESLGDSSTITVHINRIREKIELDSSNPEYIETVWGAGYRFN 231


>gi|309775270|ref|ZP_07670279.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916933|gb|EFP62664.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 233

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 86/232 (37%), Gaps = 15/232 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D A + D         G       +      +  S   D++ I+  +       
Sbjct: 4   VILIAEDEASIADAIEIYLKSQGYQTLKAANGAAAWEIVESTPVDLAIIDVMMPV--MDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L   IR     P+I +S        +   + G DD V KP    E+LARV A  RR  
Sbjct: 62  IALTMKIRETYDFPIIILSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVHAQLRRHM 121

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                 E           G I +    ++  V GE   L   E RIL+  M + G+  + 
Sbjct: 122 RYRQLLEQKQEVEDSLLLGGIELHRKSKEVFVDGEPRRLTPIEFRILQLFMEHPGQVFSS 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             I+  ++   + AV    V  HI  LR+K+  N      +     +GY I+
Sbjct: 182 DDIYEHVWK--EAAVNTETVMVHIRNLREKIEINPRTPRYIKVVWGVGYKIE 231


>gi|126698221|ref|YP_001087118.1| two-component response regulator [Clostridium difficile 630]
 gi|255099750|ref|ZP_05328727.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|115249658|emb|CAJ67475.1| Two-component response regulator [Clostridium difficile]
          Length = 229

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +  S++   +++    ++         I   L+       
Sbjct: 3   ILLVEDDKNIREMVYDFLISENYSVK--TAIDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR+ S VP+I  +   S    +   + G DD + KP    E+LAR+ A  RR  V
Sbjct: 61  EVLKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATV 120

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++         +   + +          G    L   E  I++ L  N+G+  +K Q++
Sbjct: 121 YSSSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLY 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           +AI+        ENV+ +HI++LR KL + +   + + +   +GY ++
Sbjct: 181 NAIWKEP-YYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKME 227


>gi|168466206|ref|ZP_02700076.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195631460|gb|EDX50020.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 240

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLVDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|323976449|gb|EGB71539.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 227

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLIVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|295693549|ref|YP_003602159.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031655|emb|CBL51134.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 239

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 93/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V          +   +      +      +  +  +  ++  L       +
Sbjct: 8   ILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDFFTQEKPTLILLDWMLPV--YDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S VP+I ++   S        D G+DD + KP    E+LAR+  + RRL+ 
Sbjct: 66  TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V +   E GP++V     +     E   L  +E  ++  LM +  +  ++ ++ 
Sbjct: 126 MRQQNDVPDTSLEFGPLKVDLLKHEFYCDNEKIYLTPKEFALITELMRDPEQVKSRDELL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   + N V+ +I  +R K+ N      + + R LGY +
Sbjct: 186 DTVWG-YDFVGQTNTVDVYIRTIRNKIGNPY-KKIIKTMRGLGYCL 229


>gi|294500029|ref|YP_003563729.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349966|gb|ADE70295.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 224

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   ++         +G  +      E    L +     ++ ++  +  K     
Sbjct: 4   ILLADDDEHMRQLVRHYLQLEGYVVHEAEDGEEASGLLAKQHIHLAVVDIMMPHK--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR++   P+I ++    L+     F +G DD V KP   +E++ R+ A+ RR +V
Sbjct: 62  EVCEEIRSYYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLRRYEV 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N +        +     +    G +  LP +E  +L  L +  G+   + ++   I+G 
Sbjct: 122 VNEKMIVLNNTFIDRKSYEVHCSGRLLILPMKEFELLAQLASYPGRIFTREELIHLIWGA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D   +   ++ H+ +LR++  +   F  + + R +GY ++ 
Sbjct: 182 -DFNGDNRTIDVHVKRLRERFEHTDDF-VITTVRGVGYKLEV 221


>gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +    L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGRAALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKAEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL N    + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLDC 223


>gi|27461219|gb|AAM09851.1| response regulator [Enterococcus faecium]
 gi|109240379|dbj|BAE96113.1| response regulator [Enterococcus raffinosus]
          Length = 232

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       +DG ++  F +         S   D++ ++  L        
Sbjct: 5   ILVVDDEKELADLVEVYLKNDGYTVYKFYNGRDALNCIESVELDLAILDIMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR     P+I ++        +       DD + KP +  E++ARV A  R+   
Sbjct: 63  QICQKIREKFYFPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +      +   + +        + G+   L   E  IL YL   +G  V+  
Sbjct: 122 YKQPCIKQEAERTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++F A++G        N V +HI +LR+K++        + +   +GY+I+
Sbjct: 182 ELFEAVWGER-YFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIE 231


>gi|225017492|ref|ZP_03706684.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum
           DSM 5476]
 gi|224949731|gb|EEG30940.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum
           DSM 5476]
          Length = 237

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +           L      D+  ++  +        
Sbjct: 19  ILIVDDEEKIRAIIRKYAEFEGYLVSEAADGMEAVKLCRDRDFDILILDVMMPE--LDGF 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR     P++ +S        +  F+ G+DD V KP   RE++ RV AI  R + 
Sbjct: 77  STCREIRKFKNTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKAILNRSQP 136

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                E      + +   GR   +      +  +E  +L YL+ N+G  + + ++   ++
Sbjct: 137 PQAEKEIAAFEGLTIDFTGRMVYIDDVRIDMSPKEYDLLFYLVKNKGIALTREKLICDVW 196

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   ++  +++HI  LR +L        + + R +GY  +
Sbjct: 197 G-YDFYGDDRTLDTHIKLLRGRLGAY--RHYIVTLRGVGYRFE 236


>gi|167839646|ref|ZP_02466330.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           MSMB43]
          Length = 229

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G   +             +   D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGMYLRKGLTEAGFVADWVEDGVTGLHQAETEEYDLIILDVMLP--GHDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P++ ++    +   +   + G DD V KP    E++ARV +I RR + 
Sbjct: 61  TVLERLRRERSTPVLFLTASDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQA 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       + +    R    QG+V  L  +E  +L  LM   G+ + +  I S ++ +
Sbjct: 121 RESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV++ I +LR K+ +      + + R +GY ++ 
Sbjct: 181 -NFNSDTNVVDAAIRRLRAKIDDAYEPKLIHTVRGMGYVLEV 221


>gi|163789439|ref|ZP_02183878.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159875293|gb|EDP69358.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 238

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 104/236 (44%), Gaps = 22/236 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   V +     F  +        +G   L+   +L  S + D+  ++  L    
Sbjct: 3   ILMIEDNQSVCEMMEMFFMKEEWKATFIQDGKEGLDA--FLNDSGKWDLVILDLNLPS-- 58

Query: 58  EKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +++ R +R  S++ P+I ++   S    +   + G DD V KP     ++AR+ A+Y
Sbjct: 59  LDGMQICREMRKVSKIIPIIMLTAKDSESDQVIGLEIGADDYVTKPFSPLTLIARIKALY 118

Query: 117 RRLKVSNN----------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
           RR  +  +            ET  +++    R   +  +    L  +E  +L  L  +  
Sbjct: 119 RRADLIRDEADKLADKAYEIETKYLKMDKRTRQAILYDKPIESLTPKEFELLYTLAKSPR 178

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+ + ++  ++   +E  V++HI KLR+K+ +K G   V +   +GY  D
Sbjct: 179 QVFSREQLLTIVWD-YEYFGDERTVDAHIKKLRQKI-DKTGPQVVQTVWGVGYKYD 232


>gi|153947115|ref|YP_001401057.1| DNA-binding heavy metal response regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|152958610|gb|ABS46071.1| DNA-binding heavy metal response regulator [Yersinia
           pseudotuberculosis IP 31758]
          Length = 230

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   +     +L      D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLP--GMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  SVLEGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPS 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  ++     + +    R     GE   L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDTPYPVKLLHTVRGMGYVLE 222


>gi|126733777|ref|ZP_01749524.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126716643|gb|EBA13507.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 226

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++ DD A ++D         G  +              S R D+  ++  +       
Sbjct: 1   MILVADDDAQIRDVVRIGLTQAGFGVAEAGDGRAALEKAESLRPDLIILDIGMPE--MDG 58

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ R +R  S VP++ ++        +   + G DD V+KP   RE++ARV AI +R  
Sbjct: 59  LEVCRALRKTSDVPILFLTARADEIDRVVGLELGADDYVSKPFSPRELVARVRAILKRSN 118

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G I V        V+     L  RE  +LE L+A     +++ Q+  AI
Sbjct: 119 GEVAEQVVMRRGVISVDPARHLCHVKDATVTLTSREMDLLERLIARPDHVMSRPQLVDAI 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG  +  V +  ++SH+  LR KL      D +++   +G  +
Sbjct: 179 YGT-NVNVSDRTMDSHLRNLRSKLGKAGCADAIETVHGVGIRM 220


>gi|28211540|ref|NP_782484.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203981|gb|AAO36421.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 235

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 12/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +++    L   +G  +   ++      +      D+  ++  +   G   
Sbjct: 9   IILIVDDDEEIREIINILLSREGFVVWEASNANTAMAML-EKPVDLIILDIMMP--GRNG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR  + VP++ +S         + F  G DD + KP    E+L R+ A+ RR  
Sbjct: 66  FELCTEIRKITTVPILFLSAKTQDIDKEEGFCCGGDDYLIKPFSQSELLLRIKALLRRFF 125

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V        ++N  + G + V  +     + G+   L   E +IL +L+ NR K ++  +
Sbjct: 126 VYQGVNNVSTDNTIKLGDLNVDFETGKVCINGDKVSLTGIEYQILSFLLHNRKKVLSARE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           I+  ++      +  N +  HI  LR+KL   L     + +    GY ID
Sbjct: 186 IYEHVWQEPFLPLSNNTIMVHIKNLRRKLEKDLQKPQYIRTIWGKGYYID 235


>gi|134298200|ref|YP_001111696.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134050900|gb|ABO48871.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 227

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD + +         ++G  ++          L    +  V  ++  +   G    
Sbjct: 9   ILLVDDESNILQFLEIGLQNEGFEVQTAQDGMSAITLMKQFQPHVVILDVMMP--GMDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+++    V +I ++    +   +   + G DD + KP    E+LAR+ A   R + 
Sbjct: 67  EVCRMLKKTENVAVIMLTARDEVDDRVKGLNLGADDYMVKPFSFEELLARIYARI-RNQF 125

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N   +   GP ++    ++ + +  V  L   E  +L++L+ N G  ++KT I   ++G
Sbjct: 126 PNLFGKVVVGPFQIDDRRKEIQFENRVLELSHTEYELLKFLVLNHGLVLSKTMILDKVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   EEN+VE +I  LR KL +K     + + R  GY +D
Sbjct: 186 -YDFGGEENIVEVYIRSLRDKLNDK-NHQIIRTLRRSGYRVD 225


>gi|99078311|ref|YP_611569.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035449|gb|ABF62307.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 230

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G      +        Q     D+  ++  L  K    L
Sbjct: 5   ILVVDDDPDILEVTRFAIEKAGFETCFASDGLAAIAAQRRDAPDLVVLDIGLPEK--DGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++        +   + G DD + KP   RE++AR+ AI +R   
Sbjct: 63  EVCRDIRKSSDVPILFLTARDEEIDRIVGLELGADDYLTKPFSPRELVARIKAILKRSTP 122

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S          G + + ++       G    L   E R+L+ LM      + + Q+  A+
Sbjct: 123 SITQLPTALTHGALELDAERHQCAFAGVPVSLTGSEFRLLKVLMTRPDLVLTRAQLVEAL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           YG F+  V +  ++SHI  +R K+      + V +   +G
Sbjct: 183 YG-FNIHVSDRTIDSHIRNIRAKMSEVGCTEAVVTVHGVG 221


>gi|319406904|emb|CBI80539.1| two-component response regulator [Bartonella sp. 1-1C]
          Length = 228

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G + +     +    L  +   DV  I+  L  +    L
Sbjct: 3   ILIIEDDRETGRYLEKAFLEAGHTADVAYDGDTGYTLAETVNYDVMIIDRMLPYR--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +RA   + P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SIITELRAKGIKTPVLILSALGQVDDRVTGLRAGGDDYLTKPFAFSELLARVEVLRRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       +  G+   L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGGKNIILQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLHTVRGAGYML 221


>gi|260583532|ref|ZP_05851280.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC
           700633]
 gi|260158158|gb|EEW93226.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC
           700633]
          Length = 231

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +     +    LQ++  ED   I   L+      L
Sbjct: 7   ILIIEDEKNLARFVELELQHEGYETKI--CFDGRSGLQAATDEDWDVILLDLMLPELNGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R   + P+I ++   S+   +   D G DD V KP    EILAR+ A++RRL +
Sbjct: 65  EVVRRLRQVKKTPIIIMTARDSVMDRVTGLDQGADDYVVKPFEIEEILARIRALFRRLSI 124

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       E   + +  + R     GE+  L +RE  +L  LM N    +++  + 
Sbjct: 125 EEEARVQKQTILEYRDLVIEKENRTVRRNGELIDLTKREYELLLMLMENINVVLSREVLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G +   VE NV++ +I  LR K+        + + R  GY +
Sbjct: 185 NQVWG-YKMEVETNVIDVYIRYLRNKIDIPGRESYIQTVRGTGYVM 229


>gi|326203672|ref|ZP_08193535.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986112|gb|EGD46945.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 258

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +  G      ++G ++     L        + + D+  ++  L        E
Sbjct: 32  LLVEDDTTLAFGIEYTLKNEGFNVSLAVDLAEARKALHTNKLDIVLLDVRLPD--GNGFE 89

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + IRA S++P+I ++        +   D G DD + KPI  +E+++R+ A+ RR    
Sbjct: 90  FCKEIRAVSKMPIIFLTSCNDEANVVMGLDLGADDYIPKPIRIKELISRINAVLRRNSAE 149

Query: 123 NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N A       I +         +G+   L   E ++L  L+ +  + +++  I   ++ 
Sbjct: 150 ANIASIIKSNDIEINVMQGKVMKRGQEVMLTAVEYKLLLTLIEHSEQILSRNTILEHLWD 209

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYS 219
           +  E +++N +  +I +LR+K+ +       + + R +GY 
Sbjct: 210 IDGEFIDDNTLSVYIRRLREKIEDNASSPVNILTVRGVGYK 250


>gi|302337766|ref|YP_003802972.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634951|gb|ADK80378.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 231

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +G  +         E    + + D+  ++  L   G    
Sbjct: 4   ILIIEDEPGLQMTLEDRLRVEGYEVTLAGDGLRGEAAALTGQHDLIILDIMLP--GRDGF 61

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R+ +A    P++ ++   S    +     G DD + KP     +LARV A+ RR  
Sbjct: 62  SVCSRLRKAGINTPVLMLTARGSDIDIVAGLRQGADDYMAKPFDMNVLLARVEALLRRAT 121

Query: 121 VSNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++++         R + G   +  D R+  +  +   L  +E R+LEYL+    K +++ 
Sbjct: 122 MASSALAEEGEQPRYQFGTFLLDLDKRELYLDDDPVLLSAQEYRLLEYLVRRPNKVLSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI   ++  +        V+ H++KLR+KL        + + R  GY  
Sbjct: 182 QIMDEVW-SYSSEATSRTVDVHVAKLRQKLGETAIPRHILTIRGRGYKF 229


>gi|325068515|ref|ZP_08127188.1| winged helix family two component transcriptional regulator
           [Actinomyces oris K20]
          Length = 219

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 16/225 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58
            ++++D   +       F   G+   GF +    E  Q+ A   +ED   I   +     
Sbjct: 4   ILIVEDEPRI-----VAFLTKGLKAAGFTTHTTAEGRQAVALAVQEDFDLIILDVGLPDI 58

Query: 59  KVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              E+ + +R      P+I ++   S+   +   + G DD + KP    E+LAR+    R
Sbjct: 59  DGFEVLQQLRGQGVGAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLR 118

Query: 118 RLKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +  R     + +    R   ++G    L  RE  + E  M + G+ +++ Q+ S
Sbjct: 119 PDATAPDQMRLTHRDMVLDLRARTLMLEGRTVELSAREFALAETFMRHPGQVLSREQLLS 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++GL D     NVVE ++S LR KL    G   V++ R +GY +
Sbjct: 179 SVWGL-DFDPGSNVVEVYVSYLRNKL----GRQRVETVRGMGYRL 218


>gi|308175743|ref|YP_003922448.1| two component transcriptional regulator, winged helix family
           [Bacillus amyloliquefaciens DSM 7]
 gi|307608607|emb|CBI44978.1| two component transcriptional regulator, winged helix family
           [Bacillus amyloliquefaciens DSM 7]
 gi|328555717|gb|AEB26209.1| two component transcriptional regulator, winged helix family
           protein [Bacillus amyloliquefaciens TA208]
 gi|328914103|gb|AEB65699.1| two component transcriptional regulator, winged helix family
           [Bacillus amyloliquefaciens LL3]
          Length = 227

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       ++G  +           L  + +  ++ ++  +   G   LE
Sbjct: 10  LIVDDEPAIIDFLTMGLVNEGFEVMSAADGMSAMNLVKTFQPHIAVLDVMMP--GMDGLE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R+++  S   +I ++    ++  +     G DD + KP    E+LAR+ A  R     
Sbjct: 68  LSRMLKKTSNTAVIMLTAKDEVELRVKALIEGADDYMIKPFSFEELLARIYARIRNQFPH 127

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    GP R+    R+     +   L   E  +L++L+   G  ++KT+I   ++G +
Sbjct: 128 LFDEVVLGPFRIDDRSREIHYNEQPLKLSATEYELLKFLVLRHGTVLSKTRILDQVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   E+N+VE +I  LR+KL++K     + + R  GY +D
Sbjct: 187 DFYGEDNIVEVYIRSLREKLKDK-EHKVIRTVRGAGYRVD 225


>gi|241895290|ref|ZP_04782586.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241871596|gb|EER75347.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 229

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   E   + + +E L       D+  I   ++      
Sbjct: 3   ILIVDDDHEIAELLEIYVKNEGY--EPVIASDGKEALTKIRTNPDIGLIILDIMMPEMSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            E+ + +R  + VP++ +S        +    +G DD V KP +  E++ARV A+ RR  
Sbjct: 61  TEVLKEVRKDNPVPILLLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRAQ 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               + +    + GP+ +  D  +     G    L   E  IL  L ++  +  +   IF
Sbjct: 121 NGLAQATPEVLDVGPLTINKDSHEVRTADGVDINLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222
             ++   +  V    V  H+S LR KL +   G   V +   +GY I+ 
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKLEDATGGNQVVQTVWGVGYKIEV 228


>gi|91775069|ref|YP_544825.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91709056|gb|ABE48984.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 233

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +        G +  SL   +  E    L  S   D+  ++  +        
Sbjct: 4   ILLIDDDVELCQMMEEYLGAEDFSLTIAHDGEEGARLALSGEHDLVVLDVMMPRF--NGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+IRA SQ+P+I ++        +   + G DD ++KP + RE++AR+ AI RR+ V
Sbjct: 62  DTLRLIRASSQIPVIMLTAKGDEIDRIVGLELGADDYLSKPFNPRELVARLRAIQRRVVV 121

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +   +           G I ++   R  E +GE   +   E  +LE L  + G  V+K 
Sbjct: 122 RDEALQNHHNKPSITRVGKIAIYPSERIIEWKGEPLDITTSEYALLEVLARHAGHVVSKA 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++F+   G  +   +   V+ H+S LR+KL   + G  P+ + R +GY  
Sbjct: 182 ELFTQALGRAESRYD-RSVDVHVSNLRQKLGLLEDGRSPIQTVRGVGYQF 230


>gi|54308179|ref|YP_129199.1| putative two component response regulator transcription regulator
           protein [Photobacterium profundum SS9]
 gi|46912607|emb|CAG19397.1| Putative two component response regulator transcription regulator
           protein [Photobacterium profundum SS9]
          Length = 231

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 98/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G +++  +      +  +S   D+  ++  L        
Sbjct: 3   ILIIEDEIKAGQYLKKGLTESGYTVDLASDGVEGLYHATSHSYDLIILDIMLP--KLDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R+     P+I ++    ++  +  F+ G +D V KP    E+LAR+  ++R   
Sbjct: 61  QILKTLRSSEMSTPVIMLTAKEQVEDRVKGFELGANDYVVKPYAFPELLARIQNVFRNHS 120

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +N      +++    R      +   L  +E  +LE LM  +G+ +++T I 
Sbjct: 121 PKSKNISQSNTIVIADLQLDIIKRTATRNNQSITLTAKEYLLLELLMRKQGEVLSRTTIA 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++ + +   + NV++  + +LR K+      + + + R +GY ++
Sbjct: 181 SLVWDM-NFDSDTNVIDVAVKRLRSKIDRPFEKELIHTIRGMGYKLE 226


>gi|13472591|ref|NP_104158.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14023337|dbj|BAB49944.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 222

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 128/220 (58%), Positives = 160/220 (72%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LV +GY +LF  +GV+  GF   EF EW+ S+A  D+ ++ AFLIG     
Sbjct: 1   MIVIVDERELVTEGYNSLFDREGVACAGFAPGEFGEWVNSAADTDLRSVRAFLIGDCRDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              PR IR  +  P+I +S+  SL+ TL  F+SGVDDV+ KP+H REILAR+ AI RR  
Sbjct: 61  AISPRQIRDRTGAPVIALSEQHSLENTLRLFESGVDDVIRKPVHIREILARITAIRRRAH 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G +R+F DGRDPE+ G+  PLPRRERRILEYL +NRG+RV KTQ+F+AIYG+
Sbjct: 121 EDVAYTEIGAMRIFMDGRDPEIDGQPLPLPRRERRILEYLASNRGRRVTKTQVFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FDE VEENVVESHISKLRKKLR KLG DP+DSKRFLGY +
Sbjct: 181 FDEEVEENVVESHISKLRKKLREKLGTDPIDSKRFLGYRL 220


>gi|310779946|ref|YP_003968278.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749269|gb|ADO83930.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 222

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  ++   + E   +L S    D+  ++  +       L
Sbjct: 3   ILVVEDEQNIMTYLKKGLTEAGYKVDVAGNGEDAIYLASINNYDLVILDVMIP--KINGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ RI+R       +I +S    +Q  ++  D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVCRILRREKNPAYIILLSAKDQVQDKVEGLDAGADDYLTKPFVFAELLARIRAVLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N  E   + V    R+ +  G+   L  +E  +LEY + N+   + +T I   ++ 
Sbjct: 121 EDKENIIEAKGLTVNLLNREVKRGGKDIELTLKEFSLLEYFIRNKNLVLTRTMIAEKVWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + D   + NVV+ +I+ LRKK+        + + R +GY +
Sbjct: 181 I-DFLTDTNVVDVYINHLRKKIDKDFDDKLIYTVRGVGYIL 220


>gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 238

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G S+   ++ +      ++   D+  ++  L        
Sbjct: 7   LLLVEDDGQIAKIISDHLRKYGFSVAWASTGKEGLEEFAAEAFDLVLVDLMLPE--LDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR   ++P++ IS     ++ +  F+ G DD + KP    E+ AR+ +  RR + 
Sbjct: 65  TLLRTIRKTHEIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITSHLRRYRR 124

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +T         + +    +   + G++  L  +E  +L  L  N  +  +K  + 
Sbjct: 125 YQGVNDTSKVNVYHNGLSIDFSQKAVHLDGQLLNLTAKEYELLHLLAKNPFETFSKEALL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             I+   D +   N V  HI  LR KL++       + +    GY  
Sbjct: 185 EMIWKQEDISA-SNTVTVHIKSLRSKLKDTSRSAVFIQTVWGSGYRF 230


>gi|297192903|ref|ZP_06910301.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151548|gb|EDY66528.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 234

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 96/233 (41%), Gaps = 22/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG ++              + R D++ ++  +   G   + 
Sbjct: 7   LFVEDDDVIREATQLALERDGFAVTAVPDGLLGLEAFRADRPDIALLDVMVP--GLDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR    
Sbjct: 65  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124

Query: 119 -----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                       +        G + V +DG +    GE   L   E R+L    +  G  
Sbjct: 125 GGAAGDGGPAGRQEQGGALTFGDLEVDTDGMEVRRAGEPVSLTPTEMRLLLEFSSAPGTV 184

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 LSRDKLLDRVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 232


>gi|294630664|ref|ZP_06709224.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833997|gb|EFF92346.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 233

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 28/235 (11%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++        DG ++    +G + LE         R D++ ++  +   G 
Sbjct: 8   LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRAD----RPDIALLDVMVP--GL 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 62  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121

Query: 119 L-------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                         +V       G + V +DG +    G    L   E R+L    +  G
Sbjct: 122 FGHAGGARAAADSGEVDGGVLTFGDLEVDTDGMEVRRAGRPVALTPTEMRLLLEFSSAPG 181

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 182 TVLSRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 231


>gi|167627448|ref|YP_001677948.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597449|gb|ABZ87447.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 229

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +       F ++G+     +  +   +L ++   DV  I+  +       + 
Sbjct: 8   LVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWMMPY--LDGIS 65

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L +I+R  +  +P+I +S   S +  +    SG DD + KP    E++ RV  +Y+R K 
Sbjct: 66  LLKILRKQNVTIPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELIVRVNILYKRTKQ 125

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +++   G I +     +     E+  L +RE ++L  L+ ++ + V+KT I   +
Sbjct: 126 IAEAQSHKLICGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 186 WD-YDFDPQTNVVEVHISRLRNKLTENGLPDPIKTIRGFGYVI 227


>gi|116329429|ref|YP_799149.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116329967|ref|YP_799685.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122173|gb|ABJ80216.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123656|gb|ABJ74927.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 234

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       ++G  ++   +             D+  ++  L G G   ++
Sbjct: 13  LVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIG--GMD 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + I+    +P+I ++        +   + G DD V KP   RE++ARV ++ RR K  
Sbjct: 71  LCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKEG 130

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G I +        +      L   E +IL   M N G    + ++   
Sbjct: 131 EEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRDKLLDR 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G  D  V +  V+ +I +LR KL +    + +++ R +GY  +
Sbjct: 191 VWGK-DIYVTDRAVDVNIKRLRDKLGD--EKERLETIRGIGYRFN 232


>gi|319442620|ref|ZP_07991776.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Corynebacterium
           variabile DSM 44702]
          Length = 225

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + DG       +G+ ++  N  E    + S A  D   ++  +   G    
Sbjct: 3   ILVVDDEVRLADGVRRGLEAEGMVVDVVNDGETGLAMASDADYDAIVLDVMMP--GMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +   +R      P++ ++        ++  D+G DD + KP  +  ++AR+ A+ RR  
Sbjct: 61  RVCEALREDGNWTPVLFLTAKDGEWDEVEGLDTGGDDWLTKPFSYPVLVARLRAMVRRGS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        G +R+    R      +  PL  RE  +L++L+ + G+ V K ++ + ++G
Sbjct: 121 RGRPEILSAGDLRLDPAARQAYRSDDEIPLTARELAVLDFLLRHAGEVVTKQEVLANVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                 + N+VE +I  LR K+    G   + + R  GY +D N
Sbjct: 181 GS-FDGDTNIVEVYIGHLRAKVDRPFGRAAIGTVRGAGYRLDRN 223


>gi|300853303|ref|YP_003778287.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433418|gb|ADK13185.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 233

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +S    +       L    +   S +   ++       +
Sbjct: 5   LIIDDDKELCVLMKKCVEQENLSAIIAHGGVEGLRLADENKNSCSLVILDVMMPDIDGFQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S +P++ ++        +     G DD + KP    E++ARV ++ RR    
Sbjct: 65  VLKKIRETSNMPVLMLTAKSDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTTL 124

Query: 123 NNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           N              + +    R   V      L  +E  +L +L +N+G+   K QI+ 
Sbjct: 125 NPTFITDTDYIMLKGMVIDKANRMVSVNDIPVELTSKEFDLLSFLASNKGRVFTKKQIYM 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
            ++   + A ++N + S ISKLRKK+         + + R +GY  +
Sbjct: 185 QVW-EEEYAYDDNNIMSFISKLRKKIEPDPEHLFYILTVRGVGYRFN 230


>gi|70730633|ref|YP_260374.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68344932|gb|AAY92538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 233

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   +    +G  +   +  +       ++  D+  ++  L   G   L
Sbjct: 4   ILLVEDDTALSELIASYLERNGYQVSVISRGDQVRERAKASPPDLVILDLMLP--GLDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R++RA S   P++ ++        +   + G DD V KP   R +LARV  + RR  
Sbjct: 62  QVCRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + ++++   G + +    R    + ++  L   E  +L  L  + G+ +++ QI  
Sbjct: 122 LSEPQSASDQILMGNLCIDLSERTVTWREQLVELSSGEYNLLVVLARHAGEVLSRDQILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            + G+ +    +  V+  ISKLR+K  +  G    + +    GY
Sbjct: 182 RLRGI-EFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGY 224


>gi|228906400|ref|ZP_04070283.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228853216|gb|EEM97990.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 230

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  ++SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTIDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|186475207|ref|YP_001856677.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191666|gb|ACC69631.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 253

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLVRSLRQSAYAVDHVKTGAEADTALSMQTFDLLILDLGLP--KMSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                  + G +     GR      +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVKHGSLSFDQVGRIAYANDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLE 219


>gi|93006927|ref|YP_581364.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394605|gb|ABE75880.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 240

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 92/231 (39%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +      +    L  +   D+  +   L+      +
Sbjct: 5   ILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLDTKERDIDLVVLDLMLPDMDGM 64

Query: 62  ELPRIIRAHSQ-----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           ++ + IR +       VP+I ++        +   + G DD + KP   RE+LAR+ A+ 
Sbjct: 65  QVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVI 124

Query: 117 RRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR +  N      +    G + VF D  +  +      L   + ++L Y   + GK + +
Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDLPVRLTTHQFQLLHYFATHSGKVLNR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q++ A+         +  ++ HIS+LR  + +       + + R +GY  
Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|119356708|ref|YP_911352.1| two component transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354057|gb|ABL64928.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 236

 Score =  220 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G   +   + E      +  R D+  ++  L   G   
Sbjct: 5   LLLVVEDDQNLAKLLGYNLERAGYRHQLSPTGEDALEQLAKRRFDLVLLDLMLP--GIDG 62

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            ++ R IR +     +P+I ++        +  F+ G+DD V KP   RE+  R+ AI +
Sbjct: 63  FDVCRKIRQNQLLRDIPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELTLRIRAILK 122

Query: 118 R----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R                + V     + ++ G+   L   E ++L  L+  +G+  ++  +
Sbjct: 123 RDRRQSAQHQEVLSAAGLDVDIVRHEVKLDGKEIVLTLMEFKLLVALLKRKGQAQSRDML 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S ++ + D  +    +++HI++LR+KL        + + R LGY  +
Sbjct: 183 LSDVWEV-DRFINTRTIDTHITRLREKLGVTGS--MIKTVRGLGYKFE 227


>gi|304408131|ref|ZP_07389780.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342819|gb|EFM08664.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +G  ++  +  E      ++ +  V  ++  +        
Sbjct: 5   ILVADDEPGIASAIAYALQREGFEVQVASDGEEALAAVAAFQPHVLLLDVMMP--KLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +    +  +I ++    +   +   + G DD + KP   RE+LAR  A+ RRL+ 
Sbjct: 63  DVCRRLPTSGRPGVILLTVKNDIVDKVLGLELGADDYMTKPFDIRELLARTNALLRRLEA 122

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E G + + +D R     G    L  +E  +L  L+    +  ++ ++   
Sbjct: 123 GKAVEPAAGIEIGGLLIRTDSRTVTADGSAIELTPKEFDLLALLLGKPDRVFSRDELLEL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G+ D       V+ H+ +LRKKL  +     + +   +GY 
Sbjct: 183 VWGI-DYEGGTRTVDIHVQRLRKKLGAQHAA-LLQTVFGVGYK 223


>gi|290968483|ref|ZP_06560022.1| response regulator receiver domain protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781479|gb|EFD94068.1| response regulator receiver domain protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 226

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  I      G    GF             + ++  ++  L   G   
Sbjct: 1   MIWCVEDDENIREIEIYTLNSTGFEAIGFADGVQFWKAIQKEKPELVILDVMLP--GMDG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL   +R       +P+I  +   +    +   D G DD + KP    E+++RV A+ R
Sbjct: 59  VELLGKMRHSVELENIPVIMATARGAEHEKIQALDLGADDYIVKPFGVMELVSRVKAVLR 118

Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R +        + G + +  D R   ++GE   L  +E  +L   +++ G    + Q++ 
Sbjct: 119 RCRQGRVFELLQVGSLILNLDERTLTIEGERIMLTFKEFELLHLFLSHPGSAFTREQLYD 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + D   +   ++ HI  LR+KL        +++ R +GY  +
Sbjct: 179 LVWNI-DYMGDSRTLDMHIKTLRQKLGRYG--KCIETVRHIGYRWE 221


>gi|255526947|ref|ZP_05393841.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185076|ref|ZP_06853486.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509347|gb|EET85693.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049910|gb|EFG89334.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   + D        +G  ++  +S  E  E+LQ   + ++  ++  L    E  
Sbjct: 5   IIVIEDEFSINDILTFALKGEGYKVKSASSSKEAREFLQDF-KPNLVLLDINLPD--ESG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + I A+ ++P+I ++    +   +   + G DD + KP H +E+L RV    RR+ 
Sbjct: 62  FELCKFINANYKIPIIMLTARNDITDKVLGLELGADDYITKPFHIKEVLVRVKIALRRVD 121

Query: 121 VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              N             I++  + R     G+   L  +E  +L + + N+ +   + +I
Sbjct: 122 KYRNLDNYNDFINLNDSIKIKLENRMVIKDGKEIKLKPKEYDLLVFFIKNKNRVFTREEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G+ D   E   V+ H+ +LR KL    G   +++   +GY +
Sbjct: 182 LDKVWGI-DYCGEIRTVDIHVRRLRAKLNLDSGQSFIETVFGVGYVM 227


>gi|229061003|ref|ZP_04198357.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228718372|gb|EEL70006.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 236

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +       +    +  S   D+  ++  +        
Sbjct: 16  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPI--MDGW 73

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 74  TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 133

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S  +   G + +           E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 134 IGSTQKIHFGNVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 193

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 194 I-DYAGDDRTVDVHIKRLRERFATTPDF-RIETVRGLGYRLEV 234


>gi|226364525|ref|YP_002782307.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243014|dbj|BAH53362.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 228

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++   A    +G  +   +       + +++  DV  ++  L   G   LE
Sbjct: 7   LVVDDEATIREAVAARLRAEGFDVVTASDGPAAVTVCAASSPDVLVLDVMLP--GFDGLE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD ++KP   R ++ARV A+ RR   +
Sbjct: 65  VCRRVQASRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRRADRA 124

Query: 123 NNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +            G + V    R      +   L R E  +L Y  +     +A+  + +
Sbjct: 125 HEAVPAERGGLAVGDLEVDLVERRVRRGADEIHLTRTEFDLLAYFASRPRAAIARESLLA 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G  D A     V+SH+  LR+KL    G D + +   +GY++D 
Sbjct: 185 EVWGWGDGAG-SRTVDSHVKALRRKL----GGDLIRTVHGVGYALDV 226


>gi|219849054|ref|YP_002463487.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543313|gb|ACL25051.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 247

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALF-GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   +              ++   N +E  E      + D+  ++  +       
Sbjct: 23  ILVADDDPSIGRLIQTALPAQQYETVVVANGMEALEAF-DRGQFDLVFLDVMMPFV--DG 79

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +    IRA S VP++ I+        +  F  G D+ + KP    E +ARV AI RR  
Sbjct: 80  FDACERIRAKSDVPIVIITARDGTDDIVQGFRRGADEYITKPFRVAEFVARVEAILRRVD 139

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +      G + + +      V+G    L   E  +L +L AN G+   +  +F 
Sbjct: 140 MQKARTAPPLVHVGDLVIDATAHKVSVRGAEVKLTPMEFELLYFLAANAGQVFTREVLFR 199

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G ++   E N+V+  + +LR+K+         + + R +GY ++
Sbjct: 200 EVWG-YEYIGETNLVDVCVRRLREKVEVEPSKPKIIVTVRGVGYKLE 245


>gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 238

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +   ++           R D   ++  +   G     
Sbjct: 15  LVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMP--GMDGFG 72

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           L R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 73  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGG 132

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +R     I +  D  +    GE   L   E  +L Y + N G  ++K +I   
Sbjct: 133 RVQEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 193 VW-RYDFGGDVNVVESYVSYLRRKI-DTGDKRLLHTLRGVGYVL 234


>gi|312621388|ref|YP_004023001.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201855|gb|ADQ45182.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 221

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 96/221 (43%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +         +DG ++   NS   ++ L      D+  ++  L     +  
Sbjct: 4   ILVVEDQQDLNQIITRFLKNDGFNV--INSYTAKDALNKLNDADLVILDIMLPD--MEGY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +   +   +P I ++        L  F+ G +D + KP    E++ARV  + RR + 
Sbjct: 60  EVLKEA-SKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRN 118

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G + +F       V GE   L  +E  +L +L  N+    ++ +I   ++G
Sbjct: 119 FEESIKLLGGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   E   V+ HI +LR+KL++      + +   +GY +
Sbjct: 179 -FDFIGETRTVDVHIKQLREKLKDY--KFLIKTVWGVGYKL 216


>gi|255025903|ref|ZP_05297889.1| hypothetical protein LmonocytFSL_05350 [Listeria monocytogenes FSL
           J2-003]
          Length = 225

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +     E +  + +  ++ I+  +        
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIIETEQVHLAVIDVMMPN--MDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA +  +P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR  
Sbjct: 62  ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+ 
Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLE 222


>gi|237799166|ref|ZP_04587627.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022021|gb|EGI02078.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 220

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G +L+     +    L +   E    +   L        
Sbjct: 3   LLLVEDDRAIGQGIRVALNTEGYTLDWLE--DGLSALHALRSEPFDLLLLDLGLPRMDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +     G   P+   E ++L  LM   GK V + ++   +YG
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFHGCEVPMTPMEYQLLHQLMIRPGKVVTRERLSDTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E VE N +E  I  LRKKL      + + + R +GY ++
Sbjct: 181 -WQEKVESNTLEVLIHNLRKKL----STELIRTVRGVGYLLE 217


>gi|168184842|ref|ZP_02619506.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226947583|ref|YP_002802674.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237793672|ref|YP_002861224.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672112|gb|EDT84073.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841854|gb|ACO84520.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261533|gb|ACQ52566.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 228

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 89/224 (39%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + ++         +   +    + E         + +V  ++  L   G   L
Sbjct: 4   ILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLP--GVDGL 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R     + +I ++        +   + G DD + KP +  E+  R+ AI RR+ 
Sbjct: 62  EVCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +N    GP ++    +      E   +   E  +++  + N GK   + ++   
Sbjct: 122 AVKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           ++G +D   +  +V+ +I +LR K+         + +    GY 
Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224


>gi|160936100|ref|ZP_02083473.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440910|gb|EDP18634.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC
           BAA-613]
          Length = 238

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 91/232 (39%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++G        G ++  F + +  E L+     ++      ++      +
Sbjct: 8   ILLVEDDKEIREGVEIFLKSQGYAV--FQAADGVEGLKVLEEREIDLAIVDVMMPRMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD + KP    E++ARV +  RR   
Sbjct: 66  TMTAKLREKYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELMARVNSQLRRYHR 125

Query: 122 SNNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +R              G + V  +  +  V  +   +   E +IL  L+ N G+    
Sbjct: 126 FLDRLNSKQTENPKVHRLGGLEVNEETVEVTVDDKTVKVTPIEFKILLLLIQNPGRVFPA 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +I+  ++   + AV  + V  HI  LR+K+  N      V     +GY I+
Sbjct: 186 EEIYERVWN--ERAVNTDTVMVHIRNLREKIEVNPREPKYVKVVWGVGYKIE 235


>gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +E    L+    L ++   +   I   L+      LE
Sbjct: 5   LIVEDEENLAKFVGLELKHEGYEVE--TVLDGRSGLDAALENNYDVILLDLMLPELNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R   + P+I ++   S+   +   D G DD + KP    E+LAR+ ++ RR+ + 
Sbjct: 63  VARRLRETKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAIE 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      +R+  + R      ++  L +RE  +L  L+ N     ++ Q+  
Sbjct: 123 TESSDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            ++G FD  VE NVV+ +I  LR K+ +       + + R  GY +
Sbjct: 183 EVWG-FDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVM 227


>gi|311280552|ref|YP_003942783.1| two component heavy metal response transcriptional regulator,
           winged helix family [Enterobacter cloacae SCF1]
 gi|308749747|gb|ADO49499.1| two component heavy metal response transcriptional regulator,
           winged helix family [Enterobacter cloacae SCF1]
          Length = 227

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEVKTGEYLSKGLTEAGFVVDLADNGLTGYHLAMTADYDLIVLDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + +    R     G    L  +E  +LE+ + +RG+ + ++ I S ++
Sbjct: 121 AVIPESQFQVADLTLDLVSRKVSRGGARITLTSKEFTLLEFFIRHRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYVLEV 223


>gi|304408275|ref|ZP_07389923.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342744|gb|EFM08590.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 242

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 23/235 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   ++    A    +G    G  S E    L  ++  D+  ++  L   G    
Sbjct: 8   IAVVDDDEAIRQLVEAYLHKEGYRTVGLGSGEEAWELWKASPPDLWVLDLMLP--GMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR  ++VP+I IS   +    +   + G DD + KP   RE++ARV    +R + 
Sbjct: 66  ELCRRIRNEAEVPIIMISARDTEVDKILGLELGSDDYMVKPFSPRELVARVKRQLQRQQR 125

Query: 122 ----------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                           S  R     + +  + R    QGE   +  +E  +L     +  
Sbjct: 126 AIAPDGVSSAGVDAASSAARILVNGLALIPEERRVFWQGEEVEMTNKEFDMLRVFTEHPN 185

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   + ++ + ++G  D    +  V+  I ++RKK        P+++    GY +
Sbjct: 186 RAFTRGELLTLVWG-DDYFGSDRAVDHLIKRIRKK----ADMLPIEAVWGHGYRM 235


>gi|168181983|ref|ZP_02616647.1| aspartate aminotransferase [Clostridium botulinum Bf]
 gi|237796826|ref|YP_002864378.1| response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182674789|gb|EDT86750.1| aspartate aminotransferase [Clostridium botulinum Bf]
 gi|229262727|gb|ACQ53760.1| response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G ++    +           + D++ I+  L        
Sbjct: 4   IFLVEDDKAITKNLILLLRSEGFTVTHAPTRSEALAALVGNKFDLALIDISLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+ +  R+   
Sbjct: 62  TVCTEIKETQDIPVIFLTASGDEASVVTGLNIGADDYITKPFRPRELIARIRSALRKSGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +  E   I V       +  G    L   E R+L   + N    + ++++   ++   
Sbjct: 122 SPSAFEILGIHVDMASGVVKKDGSEVFLSALEYRLLLVFINNPKSIITRSRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+  N      + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPQIILTIRGTGYKL 221


>gi|59713619|ref|YP_206394.1| putative transcriptional regulatory protein [Vibrio fischeri ES114]
 gi|59481867|gb|AAW87506.1| putative transcriptional regulatory protein [Vibrio fischeri ES114]
          Length = 225

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 105/223 (47%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    +D        +G  ++  +S + +E L  +   D   I    +      L
Sbjct: 3   ILVIEDDQTTRDFVTKALEQEGFIVD--SSDDGKEGLMMAISCDYQLIILDRMLPNLDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IRA  +  P++ +S   S+   ++   +G DD + KP    E+LAR+  I RR +
Sbjct: 61  KILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALAELLARINIILRRNR 120

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++N  +   + +    +   +   + PL  +E  +L YL  N  + V++ ++F A 
Sbjct: 121 PIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAA 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HI+KLRKKL N    D +++ R  GY +
Sbjct: 181 WD-YHFDPKTNVIDVHIAKLRKKLDNSGAVDLIETVRGAGYVL 222


>gi|254196433|ref|ZP_04902857.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|169653176|gb|EDS85869.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
          Length = 277

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     +    L +   E    +   L       +
Sbjct: 60  ILLVEDDRMIAEGVRKALKADGCAVDWVQDGDA--ALTALGGEAYDLLLLDLGLPKRDGI 117

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 118 DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 177

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 178 GRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 237

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 238 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 273


>gi|325523567|gb|EGD01867.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 220

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     +    L +   E    +   L       +
Sbjct: 3   ILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDA--ALTALGGETYDLLLLDLGLPKRDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 216


>gi|255527565|ref|ZP_05394430.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508731|gb|EET85106.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 367

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       D+G  L           L       +  ++  L   G    
Sbjct: 150 ILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLP--GINGY 207

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   I+      +I ++    +   +   D G DD + KP   +E+LAR+ A  R    
Sbjct: 208 EVCSEIKKWVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSLP 267

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N+    G   +     +   +  +  L   E  +L+YL+ N G  ++K  I   ++G 
Sbjct: 268 ELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG- 326

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + N+VE +I  LR K+ +      + + R +GY +
Sbjct: 327 FDFNGDVNIVEVYIRYLRDKIGDN-EHSIIRTVRGVGYKV 365


>gi|251778767|ref|ZP_04821687.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083082|gb|EES48972.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 237

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 98/231 (42%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +      +   +G  S+    +L+      +  + ++  ++  L       
Sbjct: 5   ILIVDDEIEILKLLETVLKKEGFNSVYTAKTLKEGLAEFNRVKPELVILDIMLPD--GDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ + IR+ S VP++ +S        +  F  G DD + KP   +E+  RV A  RR+ 
Sbjct: 63  YEICKDIRSKSNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVN 122

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           + GP  +     +    G++  L  +E +IL  L  N+ + ++K
Sbjct: 123 YNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKIIELTAKELKILSLLAHNQNQIISK 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +++  ++G  D    +N +  HI KLR+K+ +       + + R LGY +
Sbjct: 183 EKLWDKVWGE-DYFGFDNTIMVHIRKLREKIEDDSSNPQYILTVRGLGYKL 232


>gi|118619706|ref|YP_908038.1| two component transcriptional regulator TrcR [Mycobacterium
           ulcerans Agy99]
 gi|118571816|gb|ABL06567.1| two component transcriptional regulator TrcR [Mycobacterium
           ulcerans Agy99]
          Length = 257

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  +E  ++             DV  ++  L       L+
Sbjct: 35  LLVDDEPALTNLVKMALHYEGWDVEIAHNGREAISKFDKISPDVLVLDIMLPDV--DGLQ 92

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + +R + +  P + ++   S+   +    +G DD + KP    E++AR+  + RR   
Sbjct: 93  ILQRVRDSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSSH 152

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++   + G +++ +  R+    G    L   E  +L +LM N  + +++T+I   +
Sbjct: 153 LAPPADESLKVGDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILDRV 212

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D A   ++V+ +IS LRKK+        + + R +GY +
Sbjct: 213 WN-YDFAGRTSIVDLYISYLRKKIDADREP-MIHTVRGIGYML 253


>gi|88800953|ref|ZP_01116505.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
 gi|88776328|gb|EAR07551.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
          Length = 266

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  ++     +      ++   D+  ++  +   G+   
Sbjct: 35  LLVVDDDLEIRELLTEYLTKNGFRVDSAAEGQQMREKLNAGHFDLIVLDIMMP--GDDGF 92

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +R  S +P+I ++        +   + G DD V KP + RE+LAR+ A+ RR + 
Sbjct: 93  TLCKEVRTKSNIPIIMLTAGADETDRIIGLELGADDYVGKPFNPRELLARIKAVLRRYEE 152

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
           +            G   +    R+ + Q      L   +  +L+  ++  G+ +++  + 
Sbjct: 153 TAVVPKVAEIIRFGDFSLHLTNRELQYQDNPPEALNGADFNLLKLFLSRPGEVLSRDDLS 212

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             + G  D +  +  ++  IS+LR KLR+       + + R  GY +
Sbjct: 213 HHLRGR-DASPFDRSIDVQISRLRSKLRDDGKSPQLIKTVRGAGYIL 258


>gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
 gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
          Length = 225

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +    +         + R D   ++  +        +
Sbjct: 2   LVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKARTFRPDAVILDVMMPV--MDGFD 59

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             + +RA     P++ ++   +++  +     G DD V KP    E++AR+  I RR   
Sbjct: 60  AVKRLRADGCDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRRTGT 119

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + R     + +  D  +    G    L   E  +L YLM N G  ++K +I   
Sbjct: 120 LSAAERSARLTFADLELDEDSHEVYKAGRPVALSPTEFTLLRYLMLNAGTVLSKARILDH 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   +  VVES++S LRKK+        + + R +GY +
Sbjct: 180 VWD-YDFGGDGGVVESYVSYLRKKIDTA-EPRLIHTIRGVGYVL 221


>gi|260466604|ref|ZP_05812792.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259029610|gb|EEW30898.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 222

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 129/220 (58%), Positives = 162/220 (73%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LV +GY +LF  +GV+  GF   EF EW+ S+A  D+ ++ AFLIG   + 
Sbjct: 1   MIVIVDERELVTEGYNSLFDREGVACAGFAPGEFGEWVNSAADADLRSVRAFLIGDCREG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              PR IR  +  P+I +S+  SL+ TL  F+SGVDDVV KP+H REILAR+ AI RR +
Sbjct: 61  SISPRQIRDRTGAPVIALSEQHSLENTLRLFESGVDDVVRKPVHIREILARITAIRRRAQ 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G +R+F DGRDPE+ G+  PLPRRERRILEYL +NRG+RV KTQ+F+AIYG+
Sbjct: 121 EDVAYTEIGAMRIFMDGRDPEIDGQPLPLPRRERRILEYLASNRGRRVTKTQVFNAIYGI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FDE VEENVVESHISKLRKKLR KLG DP+DSKRFLGY +
Sbjct: 181 FDEEVEENVVESHISKLRKKLREKLGTDPIDSKRFLGYRL 220


>gi|326201907|ref|ZP_08191777.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987702|gb|EGD48528.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++   +  + +    E L      ++  +   ++      +
Sbjct: 3   ILVCDDDKEIVDAIEIYLKNEDYCV--YKAYNGAEALLVFDNYEIHLVIIDIMMPVMDGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR    +P++ +S        +   + G DD V KP +  E++ARV ++ RR   
Sbjct: 61  RATMKIREKYNIPVLMLSAKSEDTDKIIGLNMGADDYVTKPFNPLELVARVKSLLRRYVS 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +   +TG + +  D ++ ++  +   L   E +IL++L  N GK  +  QI+ 
Sbjct: 121 LGSFVAQSGVFKTGGLIIDDDAKEVKIDDKPVKLTPVEYKILKFLCENAGKVFSIDQIYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++     + E N V  HI ++R+K+  N      +     +GY I+
Sbjct: 181 QVWNEPSFSPE-NTVAVHIRRIREKIEINPKDPKYLKVVWGIGYKIE 226


>gi|168259535|ref|ZP_02681508.1| response regulator [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205350765|gb|EDZ37396.1| response regulator [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 240

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAKQSFIRAVYGVGYRWEAD 235


>gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 226

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   N+      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPE--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++   
Sbjct: 62  EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + ++ +   +
Sbjct: 122 TVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|153811804|ref|ZP_01964472.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174]
 gi|149832207|gb|EDM87292.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174]
          Length = 227

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  +     +G     +++    E L    ++ V+ I   L+  G    
Sbjct: 5   ILIVDDDMAINDMLVKYLRKNGYI--TYSAYSGTEALLFLEKQKVNLIILDLMLPGLSGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++   I+    VP+IG+S     ++ +    +G DD V KP    E+LAR+  I RR+  
Sbjct: 63  QVLAEIKKTKNVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRIYE 122

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               SN+    G + + + G +  ++ +  PL + E  IL+ LM +  +   K  I+  +
Sbjct: 123 NQYTSNSLLCCGDLNLDTIGMEATLKNQKLPLTKNEFAILKMLMEHPQQVFTKDMIYEQL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +    E   EN +  HIS LRKK+         + +   +G+ +D
Sbjct: 183 WNETLE-GTENAINVHISNLRKKIAAIDNSKSYIKTVWGIGFKMD 226


>gi|28211448|ref|NP_782392.1| two-component response regulator [Clostridium tetani E88]
 gi|28203889|gb|AAO36329.1| two-component response regulator [Clostridium tetani E88]
          Length = 240

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G S+    + E  E      + D S I   ++      +E
Sbjct: 15  LIVEDDKEINNLISKALIKEGFSV--VQAFEGIEGYSKYRKIDFSIIILDIMLPYLNGIE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP+I IS        +   + G DD + KP    E++AR+ +  RR    
Sbjct: 73  IMKKIREESVVPIILISAKDEEYDRIIGLELGADDYIVKPFFVGELVARIKSQLRRYIDF 132

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +      +R + G I +  +       GE   L  +E  +L+    N  +   K QIF  
Sbjct: 133 HKNDEVISRIQKGDIILDLNNYCIYKNGEKIDLTAKEFGLLKLFFTNPNRVFTKMQIFEN 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++   +   ++N +  +I +LR K+ +     + + +   +GY +
Sbjct: 193 VW-HEEYRGDDNTIMVNIRRLRNKIEDDPNNPEYILTVWGIGYKL 236


>gi|146295477|ref|YP_001179248.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409053|gb|ABP66057.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 221

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +         ++G  +   NS   +  L      D+  ++  L     +  
Sbjct: 4   ILVVEDQQDLNQIITRFLKNEGFEV--INSYTAKGALSKLNEADLIILDIMLPD--MEGY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +   +   +P I ++        L  F+ G +D + KP    E++ARV  + RR K 
Sbjct: 60  EVLKEA-SKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRSKN 118

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G + +F       V GE   L  +E  +L +L  N+    ++ +I   ++G
Sbjct: 119 FEESIKLLDGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   E   V+ HI +LR+KL++      + +   +GY +
Sbjct: 179 -FDFIGETRTVDVHIKQLREKLKDY--KFLIKTVWGVGYKL 216


>gi|307325774|ref|ZP_07604974.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306888562|gb|EFN19548.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++    +     +G +++         +       D   ++  L        +
Sbjct: 4   LVVEDHPMLGRALVHGLTTEGFAVDLATDGAEGLYRVGETPYDAIVLDIMLPRV--NGYD 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++         D  D G DD + KP  +  + AR+ A+ RR  +
Sbjct: 62  VCRRLRAAKDWTPVLMLTAKDGEYDEADGLDIGADDYLTKPFSYVVLTARLHALIRRGHI 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +   GR     G    L  RE  +LEYL+ + G+ V+K +I + ++  
Sbjct: 122 PRPPVLSVGDLLLDPGGRTCVRAGTPIELTTREFSLLEYLVRHEGQVVSKQEILTHVWAE 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               ++ NVVE +I  LR+K+        +++ R  GY +
Sbjct: 182 H-FDLDPNVVEVYIGYLRRKIDTPFRVRSIETVRGAGYRL 220


>gi|300742621|ref|ZP_07072642.1| DNA-binding response regulator TrcR [Rothia dentocariosa M567]
 gi|300381806|gb|EFJ78368.1| DNA-binding response regulator TrcR [Rothia dentocariosa M567]
          Length = 247

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++K+         G  ++          +    R DV  ++  +   G   LE
Sbjct: 26  LVVDDEEMLKELVSMGLKMIGWEVQSAGDGPAALAIARDWRPDVLVLDIMMP--GFDGLE 83

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IR  + +VP + ++   S+   ++   +G DD V KP    E++ R+  + +R  V
Sbjct: 84  LLDRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSGV 143

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G + +  D R+    GE   L   +  +L YLM N  + V+K+QI   ++
Sbjct: 144 AAIDDAELVVGDLVLNQDTREVTRGGEPIALTATQFDLLRYLMENAKRVVSKSQILDNVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ +      + + R  GY I
Sbjct: 204 N-YDFGGQANIVELYISYLRKKI-DVGREPMIHTVRGAGYVI 243


>gi|300693546|ref|YP_003749519.1| response regulator in two-component regulatory system with cops,
           regulation of copper resistance [Ralstonia solanacearum
           PSI07]
 gi|299075583|emb|CBJ34876.1| response regulator in two-component regulatory system with CopS,
           regulation of copper resistance [Ralstonia solanacearum
           PSI07]
          Length = 228

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +       + G  ++   +      L  +   D+  ++  L        
Sbjct: 3   LLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLAMTGDYDLLVLDVMLPD--LDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +RA    VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  QIVQSLRAAERAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+ +R +   + +    R     G+   L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFAPKLIQTVRGMGYVLE 222


>gi|229168168|ref|ZP_04295895.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228615263|gb|EEK72361.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 233

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +       +    +  S   D+  ++  +        
Sbjct: 13  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPI--MDGW 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 71  TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 130

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S      G + +           E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 131 IGSTQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 191 I-DYAGDDRTVDVHIKRLRERFATTPDF-RIETVRGLGYRLEV 231


>gi|218294955|ref|ZP_03495809.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244863|gb|EED11387.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 225

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   V         + G ++E   S           R D+  ++  L        
Sbjct: 4   ILLIEDDPEVARLLELELKEAGFAVEWAKSGVEGLIRHREKRPDLVVLDLGLPD--LDGG 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P++ ++   +++  +     G DD + KP H  E+LAR+    R  + 
Sbjct: 62  EVARRIRATDDTPILVLTAQDAVERKVSLLSEGADDYLVKPFHPAELLARIQVQLRHREG 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S      G + ++   R    + +   L  +E  +L  LM   G+  ++ +I   ++G  
Sbjct: 122 S-EVLSVGELTLYPKRRQVFFREQEVRLSPKEFDLLALLMGRPGRVFSRQEIEEKVWGRP 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               + NV++ H++ LR KLR    +  + + R LGY++
Sbjct: 181 -LGRDSNVLDVHVANLRAKLREAGAYGYLRTVRGLGYAL 218


>gi|187932341|ref|YP_001885950.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187720494|gb|ACD21715.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 235

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 93/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       + G ++  F +    E L     E +      ++      ++
Sbjct: 7   LIVEDEKEICDAIAIYLNNQGYNV--FKAHNGIEGLDVIKNETIHLAIVDIMMPKMDGIQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   +R     P+I +S        +   + G DD + KP +  E+LARV +  RR    
Sbjct: 65  MTMKLRGEFDFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQLRRYSKY 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +  NN      + + ++ ++  V  E   L   E +IL  L+ N G+  +  +
Sbjct: 125 LNVINNLEEKNNNFIIDGLELNAETKEVFVDEEPVKLTPIEFKILHLLIKNPGRVFSADE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 185 IYEKVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 232


>gi|164688245|ref|ZP_02212273.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM
           16795]
 gi|164602658|gb|EDQ96123.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM
           16795]
          Length = 236

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          +G +L+   +LE    + +S   D+  ++  L        
Sbjct: 4   ILMVEDDSTIAFAVKYAVEQEGFNLDIAENLENARKIVNSKEYDLILLDVMLPD--GNGY 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  + +R H    P+I ++        +   D G DD + KP   RE+++R+ AI RR  
Sbjct: 62  EFLKQLREHDEDTPVIFLTACDEEVNIVMGLDIGGDDYITKPFRVRELISRINAILRRKG 121

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S +      +   I + +         E   L   E ++L  L+ N+   +++ QI   
Sbjct: 122 KSQDSNKKILKFKNISIHTLEARVFKNNEEIFLTSAEYKLLLILIQNKNMVLSRAQILEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           ++ +  + + +N +  +I +LR+K+ +       + + R LGY   WN
Sbjct: 182 LWDVTYDFINDNTLSVYIKRLREKIEDDSSKPQYILTVRGLGYK--WN 227


>gi|121607345|ref|YP_995152.1| two component heavy metal response transcriptional regulator
           [Verminephrobacter eiseniae EF01-2]
 gi|121551985|gb|ABM56134.1| two component heavy metal response transcriptional regulator,
           winged helix family [Verminephrobacter eiseniae EF01-2]
          Length = 231

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + G +++   +    + L      DV  ++A L   G    
Sbjct: 3   ILIVEDEHKMAEYLRKGLSEQGCTVDLAANGIDGQHLAIWHDYDVIVLDAMLP--GLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R   Q P+I ++    ++  +     G DD + KP    E+LAR+ A+ RR + 
Sbjct: 61  SVLRSLRILKQTPVIMLTARDRVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRA 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +   G +++    R          L  +E  +L  +   +G+ ++KT I   ++ +
Sbjct: 121 QEPAQLRIGDLQIDLLSRKALRNNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 -NFDSNTNVVEVAIKRLRAKIDAPFSQKLLHTIRGMGYVLE 220


>gi|304321183|ref|YP_003854826.1| two component response regulatorT [Parvularcula bermudensis
           HTCC2503]
 gi|303300085|gb|ADM09684.1| two component response regulatorT [Parvularcula bermudensis
           HTCC2503]
          Length = 225

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A      I    + G +++     +  + +  S   D   I+  L   G   L
Sbjct: 3   ILVVEDDADAAKFLIKGLREAGHAVDHALDGDTGKNMAESGGYDAYVIDRMLP--GIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  + R A  Q P + +S    +   +    +G DD + KP    E++ARV A+ RR  
Sbjct: 61  TMLEMRRSAGDQTPALFLSALGEVDDRVAGLKAGGDDYLVKPYAFSELIARVEALGRRRG 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +N +     G + +    R     G+   L  RE R+LEYL+ +  + V +T +   ++
Sbjct: 121 PTNIQTTFTVGDLEMDVLTRTVRRAGKKVDLQPREFRLLEYLIRHSDQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY++
Sbjct: 181 -EYHFDPQTNVIDVHISRLRSKIDRDFDKPLLKTVRGAGYTL 221


>gi|125973922|ref|YP_001037832.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005047|ref|ZP_05430018.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418085|ref|ZP_06249105.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714147|gb|ABN52639.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255991015|gb|EEU01126.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409487|gb|EFB39745.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939876|gb|ADU73910.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 232

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 100/227 (44%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  + DD   + +   +    +G  +E F   +    L++  ++    +   ++      
Sbjct: 6   LIYIADDEINICNIIKSFLVKEGYDVETFT--DGRSILEAFNKKPADLLVIDIMMPEIDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L   IR  S VP+I +S   +    +     G DD + KP    E++AR+ +I+RR++
Sbjct: 64  FSLCSTIRRQSSVPIIIVSAKDTEPDKIAGLTLGSDDYLTKPFSPMELIARIKSIFRRIE 123

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +      S      G I +  D +  E  G+   L   E  +L YL  N+ + V+++++ 
Sbjct: 124 LDKMHNDSVREIRIGDIVINVDKKQAEFNGKNIGLTGTEFNLLYYLAKNKNRAVSRSELL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G F+  VE    +  I +LRKKL +      +++    G+ ++
Sbjct: 184 DKVWG-FENYVETRATDDTIKRLRKKLSDSGSSLKIETVWGFGFKVN 229


>gi|22126192|ref|NP_669615.1| two-component transcriptional regulator [Yersinia pestis KIM 10]
 gi|45441652|ref|NP_993191.1| transcriptional activator [Yersinia pestis biovar Microtus str.
           91001]
 gi|108807379|ref|YP_651295.1| transcriptional activator [Yersinia pestis Antiqua]
 gi|108811644|ref|YP_647411.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|149366068|ref|ZP_01888103.1| transcriptional activator [Yersinia pestis CA88-4125]
 gi|165926520|ref|ZP_02222352.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938800|ref|ZP_02227354.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009328|ref|ZP_02230226.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210680|ref|ZP_02236715.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401418|ref|ZP_02306915.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420362|ref|ZP_02312115.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424664|ref|ZP_02316417.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170024423|ref|YP_001720928.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis YPIII]
 gi|218929111|ref|YP_002346986.1| transcriptional activator [Yersinia pestis CO92]
 gi|229894710|ref|ZP_04509890.1| transcriptional activator [Yersinia pestis Pestoides A]
 gi|229897410|ref|ZP_04512566.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229898052|ref|ZP_04513203.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901922|ref|ZP_04517043.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|270490895|ref|ZP_06207969.1| transcriptional activator protein Irlr [Yersinia pestis KIM D27]
 gi|294503927|ref|YP_003567989.1| transcriptional activator [Yersinia pestis Z176003]
 gi|21959158|gb|AAM85866.1|AE013833_4 putative 2-component transcriptional regulator [Yersinia pestis KIM
           10]
 gi|45436514|gb|AAS62068.1| transcriptional activator [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775292|gb|ABG17811.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|108779292|gb|ABG13350.1| transcriptional activator [Yersinia pestis Antiqua]
 gi|115347722|emb|CAL20637.1| transcriptional activator [Yersinia pestis CO92]
 gi|149292481|gb|EDM42555.1| transcriptional activator [Yersinia pestis CA88-4125]
 gi|165913163|gb|EDR31786.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921741|gb|EDR38938.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991883|gb|EDR44184.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207860|gb|EDR52340.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962057|gb|EDR58078.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049114|gb|EDR60522.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056546|gb|EDR66315.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750957|gb|ACA68475.1| two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia pseudotuberculosis YPIII]
 gi|229680818|gb|EEO76913.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|229689093|gb|EEO81158.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693747|gb|EEO83796.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229702183|gb|EEO90202.1| transcriptional activator [Yersinia pestis Pestoides A]
 gi|262361952|gb|ACY58673.1| transcriptional activator [Yersinia pestis D106004]
 gi|262365909|gb|ACY62466.1| transcriptional activator [Yersinia pestis D182038]
 gi|270339399|gb|EFA50176.1| transcriptional activator protein Irlr [Yersinia pestis KIM D27]
 gi|294354386|gb|ADE64727.1| transcriptional activator [Yersinia pestis Z176003]
 gi|320015323|gb|ADV98894.1| transcriptional activator [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 230

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   +     +L      D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLP--GMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  SVLEGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPS 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  ++     + +    R     GE   L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDTPYPVKLLHTVRGMGYVLE 222


>gi|331083007|ref|ZP_08332126.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330399744|gb|EGG79405.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 235

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 101/229 (44%), Gaps = 11/229 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
           ++IDD   +          + +S +  ++ +E  + + ++      S I   ++      
Sbjct: 5   LIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMPYMDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ + IR  S +P++ ++   + +  +     G DD + KP    E+ ARV ++ RR  
Sbjct: 65  FQVLKKIREVSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSLIRRYT 124

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N              + +    R   V+G +  L  +E  +L +L +N+G+   K QI
Sbjct: 125 TLNPAFSEETDCICLKDMTIDRGNRSVTVRGALVELTGKEFDLLVFLASNKGRIFTKKQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++ ++   + A +++ + S ISKLRKK+         V + R +GY  +
Sbjct: 185 YTQVW-EDEYAFDDSNIMSFISKLRKKIEPNPEQPFYVLTVRGVGYRFN 232


>gi|330448429|ref|ZP_08312077.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492620|dbj|GAA06574.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 219

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  IA     G   E  +      +  +S   D   ++  L       +
Sbjct: 3   ILVVEDEVTLGEQIIAGLEQSGWVAELSSDGIDALYRATSEPWDAIVLDLGLP--KLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + IR  +   P++ +S    L   +D  ++G DD + KP    E++ARV A  RR  
Sbjct: 61  TVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG++  L   E ++L YLM N  K +++T++   IY 
Sbjct: 121 GNASPVIQAGDLSLDTRTSKVTWQGQLVDLTALEFKVLSYLMHNTDKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++R+K+    G D + + R LGY I+
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRRKI----GNDVIKTVRGLGYRIN 217


>gi|320352638|ref|YP_004193977.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320121140|gb|ADW16686.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 229

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + D        +G ++   +  E ++ L ++   D S +   ++  G    
Sbjct: 3   ILLIDDDTELCDLLTEYLEQEGFAVSACH--EAQQGLTTALAGDHSFLILDVMLPGFNGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L R IR  S VP++ ++        +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  DLLRKIRQASTVPVLMLTARGDEVDRIVGLELGADDYLPKPFNPRELVARIRAIQRRGEN 120

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +  +     I +    R         PL   E  +L  L+   G+ V + ++ 
Sbjct: 121 GLGNRRTAPGKLLADDIVLDPGTRTVWRHDVEIPLTTVEFALLHALLKRIGQVVNREELA 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
               G   E  +   ++ HIS LRKKL RN  G + + + R +GY 
Sbjct: 181 MEALGRKLELFD-RSIDVHISSLRKKLGRNVNGIERIKTVRSVGYM 225


>gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126]
 gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
 gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126]
 gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
          Length = 229

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +    +    E L+ +  +D   I   L+       
Sbjct: 5   ILIVEDEKNLARFVSLELQHEGYDV--VTADNGREGLEMALEKDFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ A +RR  +
Sbjct: 63  EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +      +    +++    R      E  PL +RE  +L  L++N  + + + ++  
Sbjct: 123 EAAKNAPAKASTYRDLKLDVQNRTVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D+A+E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 QVW-KYDDAIETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYVI 226


>gi|16130019|ref|NP_416583.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. MG1655]
 gi|26248453|ref|NP_754493.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           CFT073]
 gi|74312603|ref|YP_311022.1| DNA-binding transcriptional regulator BaeR [Shigella sonnei Ss046]
 gi|82543453|ref|YP_407400.1| DNA-binding transcriptional regulator BaeR [Shigella boydii Sb227]
 gi|82777414|ref|YP_403763.1| DNA-binding transcriptional regulator BaeR [Shigella dysenteriae
           Sd197]
 gi|89108899|ref|AP_002679.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. W3110]
 gi|91211367|ref|YP_541353.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UTI89]
 gi|110642289|ref|YP_670019.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 536]
 gi|117624275|ref|YP_853188.1| DNA-binding transcriptional regulator BaeR [Escherichia coli APEC
           O1]
 gi|157161570|ref|YP_001458888.1| DNA-binding transcriptional regulator BaeR [Escherichia coli HS]
 gi|170081709|ref|YP_001731029.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. DH10B]
 gi|170680336|ref|YP_001743060.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           SMS-3-5]
 gi|188492527|ref|ZP_02999797.1| DNA-binding response regulator BaeR [Escherichia coli 53638]
 gi|191169545|ref|ZP_03031273.1| DNA-binding response regulator BaeR [Escherichia coli B7A]
 gi|191169921|ref|ZP_03031475.1| DNA-binding response regulator BaeR [Escherichia coli F11]
 gi|193062926|ref|ZP_03044019.1| DNA-binding response regulator BaeR [Escherichia coli E22]
 gi|194428867|ref|ZP_03061401.1| DNA-binding response regulator BaeR [Escherichia coli B171]
 gi|215487302|ref|YP_002329733.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218549496|ref|YP_002383287.1| DNA-binding transcriptional regulator BaeR [Escherichia fergusonii
           ATCC 35469]
 gi|218558959|ref|YP_002391872.1| DNA-binding transcriptional regulator BaeR [Escherichia coli S88]
 gi|218690137|ref|YP_002398349.1| DNA-binding transcriptional regulator BaeR [Escherichia coli ED1a]
 gi|218705614|ref|YP_002413133.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           UMN026]
 gi|227887135|ref|ZP_04004940.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli 83972]
 gi|237704536|ref|ZP_04535017.1| transcriptional response regulatory protein [Escherichia sp.
           3_2_53FAA]
 gi|238901269|ref|YP_002927065.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli BW2952]
 gi|253772987|ref|YP_003035818.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162070|ref|YP_003045178.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B str.
           REL606]
 gi|256022229|ref|ZP_05436094.1| DNA-binding transcriptional regulator BaeR [Escherichia sp.
           4_1_40B]
 gi|260844689|ref|YP_003222467.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O103:H2 str. 12009]
 gi|291283320|ref|YP_003500138.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O55:H7 str. CB9615]
 gi|293405554|ref|ZP_06649546.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1412]
 gi|293410442|ref|ZP_06654018.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B354]
 gi|293415367|ref|ZP_06658010.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B185]
 gi|293446434|ref|ZP_06662856.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B088]
 gi|297520052|ref|ZP_06938438.1| DNA-binding transcriptional regulator BaeR [Escherichia coli OP50]
 gi|298381238|ref|ZP_06990837.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1302]
 gi|300897072|ref|ZP_07115538.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300930968|ref|ZP_07146328.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300955102|ref|ZP_07167506.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300978917|ref|ZP_07174430.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300981663|ref|ZP_07175649.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301021219|ref|ZP_07185252.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301026387|ref|ZP_07189832.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|306814798|ref|ZP_07448960.1| DNA-binding transcriptional regulator BaeR [Escherichia coli NC101]
 gi|307138737|ref|ZP_07498093.1| DNA-binding transcriptional regulator BaeR [Escherichia coli H736]
 gi|309787850|ref|ZP_07682460.1| transcriptional regulatory protein baeR [Shigella dysenteriae 1617]
 gi|312967314|ref|ZP_07781530.1| transcriptional regulatory protein baeR [Escherichia coli 2362-75]
 gi|312973671|ref|ZP_07787843.1| transcriptional regulatory protein baeR [Escherichia coli 1827-70]
 gi|331642699|ref|ZP_08343834.1| transcriptional regulatory protein BaeR [Escherichia coli H736]
 gi|331647732|ref|ZP_08348824.1| transcriptional regulatory protein BaeR [Escherichia coli M605]
 gi|331658159|ref|ZP_08359121.1| transcriptional regulatory protein BaeR [Escherichia coli TA206]
 gi|331663575|ref|ZP_08364485.1| transcriptional regulatory protein BaeR [Escherichia coli TA143]
 gi|59799175|sp|P69228|BAER_ECOLI RecName: Full=Transcriptional regulatory protein BaeR
 gi|59799176|sp|P69229|BAER_ECOL6 RecName: Full=Transcriptional regulatory protein BaeR
 gi|26108858|gb|AAN81061.1|AE016763_20 Transcriptional Regulatory protein baeR [Escherichia coli CFT073]
 gi|216533|dbj|BAA03141.1| BaeR [Escherichia coli]
 gi|1736788|dbj|BAA15935.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K12 substr. W3110]
 gi|1788394|gb|AAC75140.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. MG1655]
 gi|73856080|gb|AAZ88787.1| transcriptional response regulatory protein [Shigella sonnei Ss046]
 gi|81241562|gb|ABB62272.1| transcriptional response regulatory protein [Shigella dysenteriae
           Sd197]
 gi|81244864|gb|ABB65572.1| transcriptional response regulatory protein [Shigella boydii Sb227]
 gi|91072941|gb|ABE07822.1| transcriptional response regulatory protein BaeR [Escherichia coli
           UTI89]
 gi|110343881|gb|ABG70118.1| transcriptional regulatory protein BaeR [Escherichia coli 536]
 gi|115513399|gb|ABJ01474.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli APEC O1]
 gi|157067250|gb|ABV06505.1| DNA-binding response regulator BaeR [Escherichia coli HS]
 gi|169889544|gb|ACB03251.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. DH10B]
 gi|170518054|gb|ACB16232.1| DNA-binding response regulator BaeR [Escherichia coli SMS-3-5]
 gi|188487726|gb|EDU62829.1| DNA-binding response regulator BaeR [Escherichia coli 53638]
 gi|190900420|gb|EDV60241.1| DNA-binding response regulator BaeR [Escherichia coli B7A]
 gi|190909437|gb|EDV69022.1| DNA-binding response regulator BaeR [Escherichia coli F11]
 gi|192931569|gb|EDV84170.1| DNA-binding response regulator BaeR [Escherichia coli E22]
 gi|194413035|gb|EDX29323.1| DNA-binding response regulator BaeR [Escherichia coli B171]
 gi|215265374|emb|CAS09770.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218357037|emb|CAQ89669.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia fergusonii ATCC 35469]
 gi|218365728|emb|CAR03464.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli S88]
 gi|218427701|emb|CAR08608.2| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli ED1a]
 gi|218432711|emb|CAR13605.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli UMN026]
 gi|222033844|emb|CAP76585.1| Transcriptional regulatory protein baeR [Escherichia coli LF82]
 gi|226237431|dbj|BAH46953.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O55:H7]
 gi|226900902|gb|EEH87161.1| transcriptional response regulatory protein [Escherichia sp.
           3_2_53FAA]
 gi|227835485|gb|EEJ45951.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli 83972]
 gi|238860855|gb|ACR62853.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli BW2952]
 gi|242377732|emb|CAQ32493.1| BaeR transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253324031|gb|ACT28633.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973971|gb|ACT39642.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli B str. REL606]
 gi|253978165|gb|ACT43835.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli BL21(DE3)]
 gi|257759836|dbj|BAI31333.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O103:H2 str. 12009]
 gi|260448820|gb|ACX39242.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|281179177|dbj|BAI55507.1| two-component response regulator [Escherichia coli SE15]
 gi|284922073|emb|CBG35152.1| two-component response regulator [Escherichia coli 042]
 gi|290763193|gb|ADD57154.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O55:H7 str. CB9615]
 gi|291323264|gb|EFE62692.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B088]
 gi|291427762|gb|EFF00789.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1412]
 gi|291433015|gb|EFF05994.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B185]
 gi|291470910|gb|EFF13394.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B354]
 gi|294494062|gb|ADE92818.1| DNA-binding response regulator BaeR [Escherichia coli IHE3034]
 gi|298278680|gb|EFI20194.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1302]
 gi|299879705|gb|EFI87916.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300307464|gb|EFJ61984.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300317945|gb|EFJ67729.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300359122|gb|EFJ74992.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300398228|gb|EFJ81766.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300409550|gb|EFJ93088.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300461194|gb|EFK24687.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|305852192|gb|EFM52644.1| DNA-binding transcriptional regulator BaeR [Escherichia coli NC101]
 gi|307554152|gb|ADN46927.1| transcriptional regulatory protein BaeR [Escherichia coli ABU
           83972]
 gi|307626375|gb|ADN70679.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UM146]
 gi|308924249|gb|EFP69746.1| transcriptional regulatory protein baeR [Shigella dysenteriae 1617]
 gi|309702403|emb|CBJ01725.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310332266|gb|EFP99501.1| transcriptional regulatory protein baeR [Escherichia coli 1827-70]
 gi|312288122|gb|EFR16026.1| transcriptional regulatory protein baeR [Escherichia coli 2362-75]
 gi|312946701|gb|ADR27528.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315136713|dbj|BAJ43872.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli DH1]
 gi|315285690|gb|EFU45130.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315294400|gb|EFU53748.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315299488|gb|EFU58739.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320172686|gb|EFW47921.1| Response regulator BaeR [Shigella dysenteriae CDC 74-1112]
 gi|320183719|gb|EFW58557.1| Response regulator BaeR [Shigella flexneri CDC 796-83]
 gi|320195942|gb|EFW70566.1| Response regulator BaeR [Escherichia coli WV_060327]
 gi|320657502|gb|EFX25300.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663318|gb|EFX30623.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|323161803|gb|EFZ47682.1| transcriptional regulatory protein baeR [Escherichia coli E128010]
 gi|323168797|gb|EFZ54477.1| transcriptional regulatory protein baeR [Shigella sonnei 53G]
 gi|323936884|gb|EGB33168.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323940850|gb|EGB37038.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323948460|gb|EGB44441.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323951833|gb|EGB47707.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323956115|gb|EGB51867.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323961720|gb|EGB57323.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|324006443|gb|EGB75662.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324013872|gb|EGB83091.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|330911916|gb|EGH40426.1| response regulator BaeR [Escherichia coli AA86]
 gi|331039497|gb|EGI11717.1| transcriptional regulatory protein BaeR [Escherichia coli H736]
 gi|331043456|gb|EGI15594.1| transcriptional regulatory protein BaeR [Escherichia coli M605]
 gi|331056407|gb|EGI28416.1| transcriptional regulatory protein BaeR [Escherichia coli TA206]
 gi|331059374|gb|EGI31351.1| transcriptional regulatory protein BaeR [Escherichia coli TA143]
 gi|332097147|gb|EGJ02130.1| transcriptional regulatory protein baeR [Shigella boydii 3594-74]
 gi|332343861|gb|AEE57195.1| transcriptional regulatory protein BaeR [Escherichia coli UMNK88]
          Length = 240

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|326332848|ref|ZP_08199106.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
 gi|325949406|gb|EGD41488.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
          Length = 229

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 14/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++          +G  +                  D+  ++  L   G   LE
Sbjct: 8   LVVEDEPVINQAVSDRLTAEGYDVVRAWDGPGAVSCFEETSPDLVVLDVMLP--GYDGLE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R I+A   VP++ ++        L     G DD + KP   RE++ARV A+ RR++ +
Sbjct: 66  VCRRIQAVRPVPVLMLTARVDEADVLVGLGVGADDYLTKPFRARELVARVNALLRRVERA 125

Query: 123 NN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                     AE G +R+    R   V G    L   E  +L  L A+ G  V + ++ +
Sbjct: 126 AELAGAPRRTAEIGGLRMDPAARRVWVDGSEVRLTPTEFDLLVCLAADPGAVVTRERLLA 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D +     V+SH+  LR K+    G   V +   +GY+++
Sbjct: 186 EVWGWNDASG-TRTVDSHVKGLRAKI----GSARVRTVHGVGYALE 226


>gi|296118918|ref|ZP_06837491.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968016|gb|EFG81268.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 236

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G ++   NS      +      +   ++  +   G    E
Sbjct: 12  LVVDDEPNIVELLTVSLKFQGFNVRSANSGTEALRIAREINPEAYILDVMMP--GMDGFE 69

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++   S+   +     G DD V KP    E++ R+  I RR   
Sbjct: 70  LLAKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGA 129

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S+       + +  D  +    GE+  L   E  +L +LM N+   ++K +I   
Sbjct: 130 GQDENSDATMSYADLTLNDDTHEVTKGGEIIDLSPTEFNLLRFLMQNKEVVLSKAKILDN 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 190 VW-HYDFGGDGNVVESYISYLRRKI-DTGDSPLIHTVRGVGYVL 231


>gi|291523393|emb|CBK81686.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 228

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAR-EDVSAIEAFLIG-KGE 58
            ++++D   + +         G S E  F+  E +  L        +  ++  L G  GE
Sbjct: 4   ILIVEDDTNINNLLQEALSKAGYSCEQAFSGTEAKLLLNMQEHSYALVLLDLMLPGITGE 63

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            VLE    IR    +P+I ++   SL   +    SG DD + KP   RE+LAR+    R 
Sbjct: 64  AVLE---EIRKKGNLPVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQLRH 120

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQI 173
                    +      + +  D    ++ G++   + ++E  ILE L+ N  +  +K  I
Sbjct: 121 KEEKETEEEHNLSFKKMVLNRDTFQVKIDGKILSKITKQEFAILELLLRNPKQVFSKEDI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F   +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 181 FEYAWDEP-YMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 226


>gi|165976675|ref|YP_001652268.1| phosphate regulon transcriptional regulatory protein
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165876776|gb|ABY69824.1| phosphate regulon transcriptional regulatory protein
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
          Length = 213

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 29  FNSLEFEEWLQS----SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPS 83
           +  LE E++  +    S +  +  ++  L G+ G + ++  +     +Q+P++ ++   S
Sbjct: 11  YQVLEAEDYQSAVKKLSEKPKLILLDWMLPGRSGIQFIQYLKKSEETAQIPILMLTARSS 70

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ 143
               +   ++G DD V KP   + ++AR+ A+ RR   +N+      + +  + +    Q
Sbjct: 71  EDDCIVCLNTGADDYVTKPFSPKVLIARIEALLRRTYQNNDIINIDDLILDQNAKRVTFQ 130

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   L   E ++L + M +  K  ++ Q+   ++G  D  VE+  V+S+I +LRK L  
Sbjct: 131 KKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWGN-DIYVEDRTVDSYIRRLRKSLEP 189

Query: 204 KLGFDPVDSKRFLGYSI 220
                 V + R  GY  
Sbjct: 190 CGFERYVQTVRGSGYRF 206


>gi|115352716|ref|YP_774555.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282704|gb|ABI88221.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 220

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     +    L +   E    +   L       +
Sbjct: 3   ILLVEDDRMIAEGVRKALRADGFAVDWVQDGDA--ALTALGGEAYDLLLLDLGLPKRDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGLSLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +L+ L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLQALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 216


>gi|172060288|ref|YP_001807940.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171992805|gb|ACB63724.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 226

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V         + G  ++  ++      L      D   ++  L G G   L
Sbjct: 3   ILLVEDNQQVAGFLKKGLLETGHVVDWADNGRDGMALAIGESYDAIVLDRMLPG-GIDGL 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +RA  S+VP++ +S    +   +    +G DD V KP    E++AR+ A+ RR +
Sbjct: 62  KIVAALRAAGSKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRSQ 121

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  + + + G + +    R     G    L  RE ++LEYLM +  + V +T +   I+
Sbjct: 122 DNGFDTKLKVGDLCIDLLSRKVARAGNAILLKPREFKLLEYLMRHAEQVVTRTMLLENIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+SKLR+K+        + + R  GY +
Sbjct: 182 -EYHFDPQTNVIDVHVSKLRQKIDTGFDRSLLRTIRNAGYML 222


>gi|325660808|ref|ZP_08149436.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472882|gb|EGC76092.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 234

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+++D   +++G        G ++  F +   +E L    RE +      ++      +
Sbjct: 5   IVIVEDDKEIREGVEIYLRSQGYTV--FQAENGKEGLAIIEREKIDLAIVDIMMPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   + P+I +S        +   + G DD V KP    E++ARV +  RR   
Sbjct: 63  TMTMRLREKYEFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRRYNR 122

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + V  D  +  V G    +   E +IL  L+ + G+  +  
Sbjct: 123 FQEALNKKEEKERSYMIGGLEVNEDRVEVLVDGRQVKMTPIEFKILLLLIKHPGRVFSAE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +I+  ++   ++AV    +  HI  +R+K+  N      V     +GY ++
Sbjct: 183 EIYERVWN--EKAVNTETIMVHIRNIREKIEINPKEPKYVKVVWGIGYKME 231


>gi|319791294|ref|YP_004152934.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315593757|gb|ADU34823.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 227

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 104/224 (46%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A V D      G +G  ++   +    E L  +   D+S +   L+  G   L
Sbjct: 3   ILVVEDDARVADFLQRGLGAEGYRVQLART--GPEGLALARGSDLSLLLLDLMLPGLSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL + +RA    VP++ ++   + Q  +     G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  ELCQTLRAEGHHVPVLMLTALSNTQDKVSGLRLGADDYLTKPFAFEELLARIEALLRRGR 120

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++      +   + +  +       G+   L  +E   LE LM   G+  ++ +I S +
Sbjct: 121 EMRPRATTLQVADLVLDRERMSVTRAGKPVALTAKELAFLELLMTAPGRVYSRERILSNV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  ++ +  N+V+ ++ +LR K+ +      + + R LGY +D
Sbjct: 181 WGTNEDPL-TNIVDVYVRRLRGKIDDGHPVALLQTVRGLGYRLD 223


>gi|290892747|ref|ZP_06555739.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|290557807|gb|EFD91329.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
          Length = 225

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +G  + E  + +E E+ +  + +  ++ I+  +       
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEK-IVETEQVHLAVIDVMMPN--MDG 60

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL + +RA    +P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR 
Sbjct: 61  FELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 120

Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 181 -QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLE 222


>gi|196047153|ref|ZP_03114370.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022023|gb|EDX60713.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 225

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QRTQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYR 219


>gi|77745283|gb|ABB02542.1| response regulator [Lactobacillus reuteri]
          Length = 229

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         ++G   +  ++  +    L ++    +  ++  +       
Sbjct: 3   ILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKKALTKLNTNPDIGLIILDLMMPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ + +R  S +P++ +S  P+    +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  MDVIKRVRKDSDIPILVLSAKPADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +    GP+ +  D  +   ++G+V  L   E  IL  L ++  +  +   IF
Sbjct: 121 GEVTNDQPHILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   +  V    V  H+S LR K+     G   + +   +GY ++
Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227


>gi|302557635|ref|ZP_07309977.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
 gi|302475253|gb|EFL38346.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
          Length = 271

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + D    +   +G      N+ E      +  R D+  ++  L    G  V
Sbjct: 48  LLVVDDDPPIADLVATVARYEGWEAVTANTGEDALRRAAEFRPDIVVLDLMLPDVDGFGV 107

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L+  R+ R+ + VP++ ++    +   +     G DD + KP    E++AR+  + RR  
Sbjct: 108 LD--RLRRSGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 165

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + +  D R+    G    L   E  +L YLM      + K QI   +
Sbjct: 166 GPGFQRSVLRVGDLTMDEDTREVRRGGRTLSLTPTEYEVLRYLMRRSPTVLTKAQILDHV 225

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +      NVVE  +S+LR+KL +  G   + + R  GY I
Sbjct: 226 W-EYGFGGRSNVVELVVSRLRRKLDD-TGEPLIQTVRGFGYVI 266


>gi|229015889|ref|ZP_04172855.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022109|ref|ZP_04178662.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739199|gb|EEL89642.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745402|gb|EEL95438.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 229

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 9   LLVVEDNAALLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPE--MDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  EVIQKIRDEKIETPVLFLTAKDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDAQVDGQAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 236

 Score =  220 bits (563), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +   ++           R D   ++  +   G     
Sbjct: 13  LVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMP--GMDGFG 70

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 71  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 130

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +      R     I +  D  +    GE   L   E  +L Y + N G  ++K +I   
Sbjct: 131 GHEEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 191 VW-RYDFGGDVNVVESYVSYLRRKI-DTGDKRLLHTLRGVGYVL 232


>gi|330958140|gb|EGH58400.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 222

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++            +S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLP--GMSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+    R+     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLEQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GMANQPTLESAGLNLDESRQCVSRDGVDVQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+KL    G   ++++R  GY
Sbjct: 181 DGENE-RDSNVIEVHVNHLRRKL----GRTVLETRRGQGY 215


>gi|309812926|ref|ZP_07706654.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
 gi|308432998|gb|EFP56902.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
          Length = 225

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D   + D   +  G +G  ++        +WL +    DV  ++  L G  G  VL
Sbjct: 4   LLVEDEKHLADAVASGLGREGFVVDVAGDGITGQWLGAQNPYDVIVLDIMLPGRNGYDVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R  R     P++ ++        +D FD G DD + KP     ++AR+ A+ RR   
Sbjct: 64  AGLR--RDGVWAPVLMLTAKDGDLDQVDAFDLGADDYLTKPFSFPVLVARLRALARRGAP 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 + G + +               L  +E  +L YL    G+  +K +I   ++G 
Sbjct: 122 ERPTVLDVGGLTIDPARHVVMRGDVEISLTAKEFALLLYLARRGGEPASKPEILDNVWGA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D    +NVVE ++  LR+K+    G   +++ R  GY +
Sbjct: 182 -DFEGNDNVVEVYVGYLRRKIDAPFGTASLETVRGHGYRL 220


>gi|302543545|ref|ZP_07295887.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461163|gb|EFL24256.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 236

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 95/235 (40%), Gaps = 24/235 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG  +              + R D++ ++  +   G   + 
Sbjct: 7   LFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRADRPDIALLDVMVP--GLDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 65  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124

Query: 123 N-----------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           +                      G + V  +G +    GE   L   E R+L    A  G
Sbjct: 125 SGPGGRGGEQPGPEEPEGGVLRFGDLEVDPEGMEVRKGGEQVALTPTEMRLLLEFSAAPG 184

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 TVLSRDRLLERVW-EYGWGGDTRVVDVHVQRLRGKI----GQDRIETVRGFGYKL 234


>gi|225862629|ref|YP_002748007.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225787490|gb|ACO27707.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 225

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYDGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR+KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLREKLRKVNFPIDHHLKTVYGVGYR 219


>gi|77465432|ref|YP_354935.1| transcriptional regulator [Rhodobacter sphaeroides 2.4.1]
 gi|77389850|gb|ABA81034.1| transcriptional regulator, winged helix family [Rhodobacter
           sphaeroides 2.4.1]
          Length = 221

 Score =  220 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ DG        G   E   +LE       + R +   ++  L       L
Sbjct: 4   ILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPD--GSGL 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL   +RA    VP++ ++    L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 62  ELLAELRAAREAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  R E   + +     +    G    L  RE  +L  LMA+    ++K QI   +YG
Sbjct: 122 ALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E H+ KLR KL    G   +++ R +GY +
Sbjct: 182 -WQEEIESNAIEVHVHKLRAKL----GHGFIETVRGVGYRL 217


>gi|325519053|gb|EGC98554.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. TJI49]
          Length = 221

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 4/219 (1%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D             + G S++          L      DV  ++  L         +
Sbjct: 1   IVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEENYDVIVLDVMLPV--LDGWGV 58

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS 122
            + +R     P++ ++    +Q  +   + G DD + KP    E+LAR+  + RR     
Sbjct: 59  LKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPPRE 118

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             R   G + +    R  +       L  RE  +L+ L    G+ +++TQI S ++ + +
Sbjct: 119 TERLVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM-N 177

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 178 FDSDTNVVEVAIRRLRAKVDDAFPVKLIHTVRGVGYVLE 216


>gi|227487463|ref|ZP_03917779.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092687|gb|EEI27999.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 240

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +     G      ++             DV  ++  L       LE
Sbjct: 16  LVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPE--LDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   S    +     G DD + KP   RE++ RV A+ RR + S
Sbjct: 74  VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 133

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       G + +        V      L R E  +L  L   RG+ + +  + + 
Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRRGQALTRHDLVTE 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++       +E +V+ HI  LR+KL     G   +D+ R +GY +
Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRV 237


>gi|225386953|ref|ZP_03756717.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme
           DSM 15981]
 gi|225046965|gb|EEG57211.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme
           DSM 15981]
          Length = 231

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +        +G  + + ++  E  E+L+S    D   +   ++  G   
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGYEVLEYLES---HDADLLIIDVMMPGLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +     +R +S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 61  IRTTLKVRENSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 120

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +      + G +++  D ++  V G+   L   E  IL  L+ N GK  +  +
Sbjct: 121 QLGNLNQQPDGQVYKCGGLQINDDNKEVTVDGDPIKLTPIEYNILLLLVKNAGKVFSIDE 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 181 IYEQIWNE-EAIGADNTVAVHIRHIREKIEINPREPKYLKVVWGVGYKIE 229


>gi|307150227|ref|YP_003885611.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980455|gb|ADN12336.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 246

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     S +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +     +   L   E  +L  L+   G+ V+ + 
Sbjct: 122 TDRIPQAAKHSEILNYGPLTLVPERFEAIWFNKTVKLTHLEFELLHCLLQRHGQTVSPSD 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILKEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|15613716|ref|NP_242019.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173769|dbj|BAB04872.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 232

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++G      ++G+++  F + +  E L+    ED+  +   ++      ++
Sbjct: 8   LVVDDDKEIREGITIYLKNEGMNV--FQAKDGIEALERLNEEDIHLMLLDVMMPRLDGIQ 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR    +P+I +S        +     G DD V KP +  E++ARV +  RR    
Sbjct: 66  TTLKIREARNIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRRYVNL 125

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +          I +  D ++ +  GE   L   E RI+E LM N G+  +  +I+  
Sbjct: 126 GTYEQKKQLINLNGITLDLDAKEVKAYGEPVKLTPIEYRIIELLMTNAGRVFSIAEIYER 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++        EN V  HI K+R+K+  +      +     +GY ++
Sbjct: 186 VWNEPSFQSSENTVAVHIRKIREKIEIDPSNPRHLKVVWGIGYKME 231


>gi|229154275|ref|ZP_04282395.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228629099|gb|EEK85806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 229

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 9   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPE--MDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|166364232|ref|YP_001656505.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166086605|dbj|BAG01313.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 246

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     S +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDERTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +      V  L   E  +L  L+   G+ V+ + 
Sbjct: 122 TDRIPQAAKHSEILSFGPLTLVPERFEAVWFESVVKLTHLEFELLHCLLQRHGQTVSPSD 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILKEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|120597082|ref|YP_961656.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291504|ref|YP_001181928.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120557175|gb|ABM23102.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145563194|gb|ABP74129.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 225

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +  F + G ++E  N       L +S + D+  ++  L       L
Sbjct: 3   ILLVEDDATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQ--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA     P++ +S    +   +    +G DD + KP    E+L R   + +R +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +     G +++    R+  + G+   L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 STPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|26988171|ref|NP_743596.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148549489|ref|YP_001269591.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|24982905|gb|AAN67060.1|AE016334_9 DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148513547|gb|ABQ80407.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
          Length = 224

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       ++G  ++  ++      L      D+  ++  L        
Sbjct: 3   LLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQAYDLVILDVNLPE--IDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            + + +RA S   ++ ++ +  L   +   D G DD + KP    E+LAR+ ++ RR   
Sbjct: 61  TVLQRLRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +      + +          G+   L  +E  +L  LM   G+ +++TQI S ++ 
Sbjct: 121 QLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFDNKLIHTLRGVGYVLE 221


>gi|330958232|gb|EGH58492.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 227

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A+     +      G+ ++  ++         S   D+  ++  L       L
Sbjct: 4   ILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPE--MDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ IS    +   +    +G DD + KP    E+ ARV  + RR  
Sbjct: 62  TIVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSN 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + +    R+    GE   L   E ++LE+LM N G+ + +  IF  +
Sbjct: 122 PVSAAKTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +      N+++ HI +LRKK+        + + R  GY I
Sbjct: 182 WG-YHFDPGTNLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|226941119|ref|YP_002796193.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
 gi|226716046|gb|ACO75184.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
          Length = 233

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D    L    G ++      +    L   AR+ V  +   +   G   L
Sbjct: 4   ILVVDDDSDIRDVLGLLLQRHGFAVTC--VADGVAALDLLARQHVDLLVLDVNMPGPDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R  + V P++ +S        +    +G DD + KP    E++AR+ A  RR+ 
Sbjct: 62  EVCRQLRERAAVLPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQLRRVN 121

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     +      G ++V  D     V G+   L  RE R+L  L     +  +  
Sbjct: 122 RFAPAAAVPDNPQCLRAGVLQVDLDTCRVRVAGQPVTLTEREFRLLALLARRPERVFSLE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++    +   D  V +  + +HIS LR KL    G   V++    GY +
Sbjct: 182 ELHQGAWDNHD-PVADKTIMAHISNLRHKLGAAGGAGLVETVWGFGYRL 229


>gi|150021392|ref|YP_001306746.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149793913|gb|ABR31361.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 218

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++      +  +   ++     E    +    + DV  ++  L        
Sbjct: 3   ILIVEDDEKLRRLLELEYNHENCEVKTCEFGEDALLIYEEFKPDVVILDIMLPD--IDGT 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R       +I ++     +  L+ F+SG DD + KP    E+ AR  A+ RR  
Sbjct: 61  EVAKKLRKLDPSAGIIMLTALSQKKDKLEGFESGADDYIVKPFDFEELFARTKALARRKG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V +     G +++    R+   + ++  L + E  +L YL+ N  + V+K +I  A++G 
Sbjct: 121 VLDEEINLGELKINILKREVTFKDKLINLSKTEFDLLLYLVKNSDRVVSKEEILDAVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           F     EN+VE +I+ LRKK+      D + + R +GY+I+W
Sbjct: 180 FSYEGSENIVEVYINYLRKKI----SSDLIKTVRGIGYTINW 217


>gi|8100674|gb|AAF72358.1|AF192329_19 VanRB [Enterococcus faecalis]
          Length = 220

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       + G  ++                  +  ++  L   G    
Sbjct: 5   ILLVEDDDHICNTVRGFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLP--GMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   + + V +HI  LR KL      + + + R +GY ++ +
Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEES 219


>gi|150006575|ref|YP_001301319.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254881522|ref|ZP_05254232.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294775465|ref|ZP_06740978.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|319642909|ref|ZP_07997545.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
 gi|149934999|gb|ABR41697.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254834315|gb|EET14624.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294450706|gb|EFG19193.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|317385457|gb|EFV66400.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
          Length = 229

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 103/226 (45%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  ++  NS E    ++ +    +          G K+ 
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKMELTQYNLLLLDVMMGEISGFKMA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + +  +A + +P+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR   
Sbjct: 66  NMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTSP 125

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K +  + +   + V    +   + G    L ++E  IL  L+ N+G+  ++  I + 
Sbjct: 126 TQGKEAQEQLQYKGLLVDITKKKVSIDGIEISLTKKEFEILLLLLQNKGRVFSREDILAK 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++   +  V +  ++ +I++LRKK+        + ++   GY  + 
Sbjct: 186 VW-QEEVYVLDRTIDVNITRLRKKIGEYG--KCIVTRLGYGYCFEC 228


>gi|30263183|ref|NP_845560.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47528548|ref|YP_019897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186033|ref|YP_029285.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65320511|ref|ZP_00393470.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167632499|ref|ZP_02390826.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637046|ref|ZP_02395326.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170684879|ref|ZP_02876104.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705287|ref|ZP_02895752.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650137|ref|ZP_02933138.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564781|ref|ZP_03017702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196032201|ref|ZP_03099615.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218904374|ref|YP_002452208.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225865180|ref|YP_002750558.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227813952|ref|YP_002813961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228915829|ref|ZP_04079405.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928291|ref|ZP_04091332.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228934497|ref|ZP_04097332.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229046908|ref|ZP_04192540.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229602195|ref|YP_002867447.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254685790|ref|ZP_05149649.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254723197|ref|ZP_05184985.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738260|ref|ZP_05195963.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742572|ref|ZP_05200257.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254752575|ref|ZP_05204611.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761091|ref|ZP_05213115.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118413|ref|ZP_07056159.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|30257817|gb|AAP27046.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47503696|gb|AAT32372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179960|gb|AAT55336.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167514553|gb|EDR89919.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532797|gb|EDR95433.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170130142|gb|EDS99004.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170671139|gb|EDT21877.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172084089|gb|EDT69148.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564098|gb|EDV18062.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994952|gb|EDX58906.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218537351|gb|ACK89749.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225786724|gb|ACO26941.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227006224|gb|ACP15967.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228724453|gb|EEL75778.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228825134|gb|EEM70931.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228831338|gb|EEM76934.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843810|gb|EEM88883.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229266603|gb|ACQ48240.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724198|gb|EFI64894.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 225

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +  F + + +   +   +E++      ++       
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKV--FEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|332970747|gb|EGK09727.1| response regulator VanR [Desmospora sp. 8437]
          Length = 249

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +   ++   +    + +    ++D  A+   L+      +
Sbjct: 18  ILLIEDDPDISCLIAETLWSENYEVDVAEN--GLDGISYLKKKDYHAVILDLMLPDLDGI 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR    VP+I ++        +    +G DD + KP    E+ AR+ A  RR   
Sbjct: 76  DVLRHIRESRNVPVIILTAREEETDLIAGLSTGADDYMTKPFSIPELKARLQAHMRRYLY 135

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G + +  +  +  ++ EV  L  +E +ILE +M+   K  +K+Q+F
Sbjct: 136 LNAKPDQPEAILVHGELCLNRNSHELSIKSEVHKLTSKEFKILELMMSYPTKIFSKSQLF 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +++G  D   +EN V  HI +LR+K+  +      + +   +GY +
Sbjct: 196 RSVWG-DDSMSDENTVMVHIRRLRRKIEPDPSKPRYLQTVWGIGYRL 241


>gi|320333505|ref|YP_004170216.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754794|gb|ADV66551.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 226

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + +   A    +G   E          L  +AR D+  ++  L   G   
Sbjct: 4   LILIVEDEPHLAEILEAYARQEGFRTERAADGNTAMTLFHAARPDLILLDLMLP--GRSG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +RA  +  +I ++        +   + G DD V KP   RE++ARV A+ RR +
Sbjct: 62  LDVLRSVRAEGRTGVILVTARAEETDQVVGLELGADDYVVKPFRPREVMARVRAVLRRTQ 121

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +     G + V +      V G    L   E R+L +L +  G+   + ++   
Sbjct: 122 EALEPLSAPTRVGALEVDTRAVSVRVHGAPLSLTPAEFRLLAHLASAPGRAFTREELLEG 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              L D    E VV++H++ +R+KL        + + R +GY +
Sbjct: 182 A--LPDSDAMERVVDAHLTSVRRKLEANGAPGLLHTVRGVGYRL 223


>gi|300947806|ref|ZP_07161962.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300452626|gb|EFK16246.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
          Length = 240

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|294498881|ref|YP_003562581.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348818|gb|ADE69147.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 224

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++       + G  +      E         R D++ ++  +  K     
Sbjct: 4   ILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFK--DGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I+ +  +P++ ++        L  FD G DD V KP   +E++ARV A+ RR +V
Sbjct: 62  ELTKEIKEYFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYRV 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +NN    G I++     +         LP +E  +L  L+++ GK   + Q+   I+G 
Sbjct: 122 EANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           +D   +E  V+ HI +LR++L + K     + + R LGY 
Sbjct: 181 YDYEGDERTVDVHIKRLRERLNHMKNVGMEIKTIRGLGYR 220


>gi|16761060|ref|NP_456677.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29141243|ref|NP_804585.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213160755|ref|ZP_03346465.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213416998|ref|ZP_03350142.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213648513|ref|ZP_03378566.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289805497|ref|ZP_06536126.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|25300978|pir||AH0771 probable two-component system response regulator STY2344 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503358|emb|CAD02494.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136869|gb|AAO68434.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 240

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLP--GIDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 247

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +        +G  +                R D   ++  L       L 
Sbjct: 25  LVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSAREFRPDAVILDIMLPDV--DGLS 82

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L  RI R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 83  LLGRIRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 142

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  R+E     G + +  D  +    G+   L   E  +L YLM N  + ++K QI   +
Sbjct: 143 ALARSESLLVVGDLTLDEDSHEVTRGGDSIHLTATEFELLRYLMRNPRRVLSKAQILDRV 202

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 203 W-SYDFGGQANVVELYISYLRRKI-DAGRAPMIHTRRGAGYLI 243


>gi|293380991|ref|ZP_06627022.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|290922454|gb|EFD99425.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
          Length = 239

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V          +   +      +    L +  +  +  ++  L       +
Sbjct: 8   ILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPV--YDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S VP+I ++   S        D G+DD + KP    E+LAR+  + RRL+ 
Sbjct: 66  TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V +   E GP+++     +     E   L  +E  ++  LM +  K  ++ ++ 
Sbjct: 126 MRQQNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKSRDELL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   + N V+ +I  +R K+ N      + + R LGY +
Sbjct: 186 DTVWG-YDFVGQTNTVDVYIRTIRNKIGNPY-KKIIKTMRGLGYCL 229


>gi|217963310|ref|YP_002348988.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|217332580|gb|ACK38374.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|307572111|emb|CAR85290.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 225

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +G  + E  + +E E+ +  + +  ++ I+  +       
Sbjct: 4   ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEK-IVETEQVHLAVIDVMMPN--MDG 60

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL + +RA    +P+I ++   +L      F+ G DD V KP    E++ R+ A+ RR 
Sbjct: 61  FELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 120

Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++   I+
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              D    +  V+ HI +LR     +     + + R +GY ++
Sbjct: 181 -QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLE 222


>gi|71066375|ref|YP_265102.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039360|gb|AAZ19668.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 240

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 93/231 (40%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +      +    L ++   D+  +   L+      +
Sbjct: 5   ILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLNTKERDIDLVVLDLMLPDMDGM 64

Query: 62  ELPRIIRAHSQ-----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           ++ + IR +       VP+I ++        +   + G DD + KP   RE+LAR+ A+ 
Sbjct: 65  QVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVI 124

Query: 117 RRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR +  N      +    G + VF D  +  +      L   + ++L Y   + GK + +
Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDLPVRLTTHQFQLLHYFATHSGKVLNR 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q++ A+         +  ++ HIS+LR  + +       + + R +GY  
Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|66046356|ref|YP_236197.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|302184957|ref|ZP_07261630.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|63257063|gb|AAY38159.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330954638|gb|EGH54898.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
 gi|330972829|gb|EGH72895.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 227

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A+     +      G+ ++  ++         S   D+  ++  L       L
Sbjct: 4   ILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPE--MDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ IS    +   +    +G DD + KP    E+ ARV  + RR  
Sbjct: 62  TIVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSN 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + +    R+    GE   L   E ++LE+LM N G+ + +  IF  +
Sbjct: 122 PVSAAKTVLQVADLELNLITREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +      N+++ HI +LRKK+        + + R  GY I
Sbjct: 182 WG-YHFDPGTNLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|324997181|ref|ZP_08118293.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Pseudonocardia
           sp. P1]
          Length = 225

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G  +              +   D+  ++  L   G    
Sbjct: 5   ILVAEDEPRIASFLKKGLVAAGFGVTVVADGTGVHDHALTGGFDLMVLDIGLP--GMDGF 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA  S +P+I ++   S+  T+     G DD + KP    E+LARV     R +
Sbjct: 63  DVLRRLRAAGSAIPVIILTARDSVHDTVAGLTGGADDYMAKPFQFEELLARVQLRLERAR 122

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    R   + G    L  RE  + E  + + G+ +++ Q+   ++
Sbjct: 123 PAPDPEVLAHRGLELDPRTRLVTLHGHAVELSAREFALAETFLRHPGQVLSRDQLLRLVW 182

Query: 179 GLFDE--AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G      A   NVV+ ++  LR+KL    G D + + R  GY ++
Sbjct: 183 GSEYSAAATSSNVVDVYVRYLRRKL----GPDWIATVRGAGYRLE 223


>gi|293401478|ref|ZP_06645621.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305116|gb|EFE46362.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 225

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 95/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D   +  G +     +G  +    S +    L  +   D+  ++  L        
Sbjct: 3   ILFVEDDQAIALGLVYSLEKEGYEVIHCVSQKAALGLLEAQVFDLLLLDVSLPD--GDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +  +    VP+I ++        +   D G DD V KP   +E+L+R+ ++ RR + 
Sbjct: 61  TICKQAKHLHDVPVIFLTALDDEVNVVMGLDLGGDDYVTKPFRIKELLSRIKSVLRRYQK 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  +   + +         +G    L   E R+L   + ++G+ ++++Q+   I+ +
Sbjct: 121 DALDIVQIQHLEIHIREGKVYREGSEVFLTALEYRLLMVFVNHQGQVLSRSQLLEGIWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             + V +N +  +I +LR+KL  +    + + + R  GY ++
Sbjct: 181 AGDFVNDNTLSVYIKRLREKLEKDAAEPEIIKTIRGRGYRME 222


>gi|154487500|ref|ZP_02028907.1| hypothetical protein BIFADO_01355 [Bifidobacterium adolescentis
           L2-32]
 gi|154084018|gb|EDN83063.1| hypothetical protein BIFADO_01355 [Bifidobacterium adolescentis
           L2-32]
          Length = 224

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 16/226 (7%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +          +G +    +         S+ R D+  ++  L       LE  
Sbjct: 2   VEDEPTLATAIAQRITAEGWTARVASDGASAVQAASTLRPDLVIMDIMLPV--MDGLEAT 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118
           + I A   VP++ ++        +    +G DD + KP   RE++AR  A+ RR      
Sbjct: 60  KRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRAKV 119

Query: 119 -LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             K S N    + G + +    R   V GE   L   E  +L  L       + + ++  
Sbjct: 120 IAKNSENEKLLDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKLLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   D +     V+SH+  LR KL    G   + +   +GY+ +
Sbjct: 180 EVWDWVDASG-TRTVDSHVKALRHKL----GSKTIRTVHGVGYAFE 220


>gi|254523237|ref|ZP_05135292.1| DNA-binding response regulator [Stenotrophomonas sp. SKA14]
 gi|219720828|gb|EED39353.1| DNA-binding response regulator [Stenotrophomonas sp. SKA14]
          Length = 227

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 7/220 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D A+     +A     G+ ++     +  E L  +A  D   I    +  G   L + 
Sbjct: 7   IEDDAITAQEIVAELSSHGLQVDW--VADGREGLVRAASGDYDVITLDRMLPGLDGLAIV 64

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121
             +R      P++ +S    +   +    +G DD + KP    E+ ARV  + RR +   
Sbjct: 65  TTLRRIGVATPVLMLSALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRRQQPA 124

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G +++    R     G    L   E ++LEYLM N G+ + +  +F  ++G 
Sbjct: 125 SNETVLRVGDLQLDLLARTAHRGGRSLSLLPTEFKLLEYLMRNAGQVLTRMMLFEEVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      N+++ HI +LR+KL        + + R  GY +
Sbjct: 184 YHFDPGTNLIDVHIGRLRRKLDQADAPSLIRTVRGSGYVL 223


>gi|182414366|ref|YP_001819432.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177841580|gb|ACB75832.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 228

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 96/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD     +       + G +               +A  D+  ++  L       L
Sbjct: 5   ILLVDDEPDALEVLGFKLREAGFAPSFAADGAKALAAVRAAPPDLIVLDLMLPAV--DGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ +I+R   A + +P++ ++   +    +   + G DD V KP   RE++ R+  +  R
Sbjct: 63  EVCKILRRDPATAAIPILMLTAKAAEMDRVLGLELGADDYVTKPYSPRELVLRIKKLLTR 122

Query: 119 LKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            K S++   +   G + +        V G    L   E ++LE L   RG+   + ++  
Sbjct: 123 TKASDDPLAQLRIGGLEIDVPRHQVTVDGAPVTLTATEFKLLEILARRRGRVQTRDRLLQ 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D  ++   V++H+ +LR+KL        +++ R +GY  
Sbjct: 183 DVWG-YDNPIDSRTVDTHMRRLREKLGET--ASLLETIRGVGYRF 224


>gi|170738625|ref|YP_001767280.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168192899|gb|ACA14846.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 228

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G   +          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAASYLAKAFREAGHVADLAADGLDGYALAREGSYDVLVVDRMLP--KLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R    + P++ +S    +   +    +G DD V KP    E+LARV  + RR  
Sbjct: 61  SLIRSLREQGVETPVLILSALGQVDDRVKGLRAGGDDYVPKPYAFSELLARVEVLARRRG 120

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +          G+   L  RE R+LEYLM + G+ V +T +   +
Sbjct: 121 GGAGEPTAYRVGDLELDRLSHRVTRGGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H+S+LR K+        + + R  GY +
Sbjct: 181 WD-YHFDPQTNVIDVHVSRLRAKVDKGFDRPMIHTVRGAGYMV 222


>gi|168180732|ref|ZP_02615396.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226949683|ref|YP_002804774.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668403|gb|EDT80382.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226842646|gb|ACO85312.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 226

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   N+      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPE--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++   
Sbjct: 62  EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +    R          L  RE  +L+ LM N+   + ++ +   +
Sbjct: 122 TVKKDEDIIRCGLLSLDKMRRKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|326381575|ref|ZP_08203269.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199822|gb|EGD57002.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 238

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 14/228 (6%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D A +     +    DG  +           L      DV  ++  L   G   +E+
Sbjct: 10  VVEDEAALASLVASYLERDGFEVTVTGDGADAVALARKVDPDVVVLDLGLP--GLDGVEV 67

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R  S   ++ ++       TL     G DD + KP   RE+ AR+ A  RR +   
Sbjct: 68  CRRLRTFSDAYVVMLTARADEVDTLVGLSVGADDYITKPFSPRELSARIQARMRRPRTGF 127

Query: 124 NRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +T          G + +   GR+  V GE   L R E  +L  L +  G   ++ ++
Sbjct: 128 TGEQTPVTRAPDRVFGDLSIDVLGREVWVSGEPVHLTRTEFDLLAALSSAPGTVFSRARL 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G  +   ++++V+ HI  +R+KL +       V + R +GY +
Sbjct: 188 IDTVWGP-EWIGDDHLVDVHIGHVRRKLGDDAAQGRYVRTVRGVGYRM 234


>gi|228920611|ref|ZP_04083956.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839241|gb|EEM84537.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 242

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDQDIVRFVNVNLMQEGFKV--FSAHNGEEALEIINNNRIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N         +     + +    R   + GE   L R E  IL  + A + +     +I
Sbjct: 134 FNQNAAQEIEKKINIRGLEIDEVSRTVMLYGETINLTRTEYDILYLMAAVKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|53712868|ref|YP_098860.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60681087|ref|YP_211231.1| putative two-component response regulator [Bacteroides fragilis
           NCTC 9343]
 gi|253563148|ref|ZP_04840605.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|265762967|ref|ZP_06091535.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|52215733|dbj|BAD48326.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60492521|emb|CAH07292.1| putative two-component response regulator [Bacteroides fragilis
           NCTC 9343]
 gi|251946924|gb|EES87206.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|263255575|gb|EEZ26921.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|301162575|emb|CBW22122.1| putative two-component response regulator [Bacteroides fragilis
           638R]
          Length = 229

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  ++  NS E    +  S+   +          G K+ 
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMNISSYHLLLLDVMMGEISGFKMA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L +  +  +QVP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR   
Sbjct: 66  NLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTAT 125

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S+      +     + +    +   + GE  PL ++E  IL  L+ N+G+  ++  I S 
Sbjct: 126 SDTEKAPEQLCYQSLVIDITKKKVSIDGEEVPLTKKEFEILFLLLQNKGRVFSREDILSR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 186 IW-SDEVYVLDRTIDVNITRLRKKIGTYG--KRIVTRLGYGYCFE 227


>gi|47564389|ref|ZP_00235434.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558541|gb|EAL16864.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 225

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G ++  F + + +       +E++      ++       
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFTV--FEAEDGKVAQDVLEKENIHLAIVDIMMPFIDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|229110657|ref|ZP_04240221.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228672725|gb|EEL28005.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 225

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +  F + + +   +   +E++      ++       
Sbjct: 6   ILLADDDKHIRELLHYHLEKEGFKV--FEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|226308089|ref|YP_002768049.1| two-component response regulator CseB [Rhodococcus erythropolis
           PR4]
 gi|226187206|dbj|BAH35310.1| putative two-component response regulator CseB [Rhodococcus
           erythropolis PR4]
          Length = 225

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 102/225 (45%), Gaps = 11/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D A++++        +G  +   +       L   A+ D++ ++  L       
Sbjct: 5   LILLVEDDAVIREATQLNLERNGFRVITASGGLTGMDLAVDAKPDIAVLDVMLPD--LNG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L R IR    VP+I +S        +   ++G DD V KP     ++AR+ ++ RR++
Sbjct: 63  ISLCRRIREELSVPVIMLSARDDPVDIVLGLEAGADDYVTKPFDSGVLVARIRSVLRRVE 122

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +    +    G + +  +       G    L   E ++L  +++   K  +++++ S 
Sbjct: 123 SHSGTEKDIVTLGDLEIDRELVTVTRSGAEVALTPTEMKLLLIMVSVPRKVWSRSELLSD 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   +  +V+ HI +LR K+    G + + + R  GY++D
Sbjct: 183 VWD-YDWGGDTRIVDVHIQRLRTKI----GSEQIRTVRGFGYTMD 222


>gi|213582579|ref|ZP_03364405.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 239

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 12  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLP--GIDGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 70  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 129

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 130 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 190 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 234


>gi|113954007|ref|YP_729352.1| two-component response regulator [Synechococcus sp. CC9311]
 gi|113881358|gb|ABI46316.1| two-component response regulator [Synechococcus sp. CC9311]
          Length = 255

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 96/232 (41%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+   +      G ++      E       S   D+  ++  L        
Sbjct: 12  ILVVDDEPAVRRVLLMRLQLAGYNVVSAEDGEEALEKFHSESPDLVVLDVMLP--KMDGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   S+   +   D G DD + KP   +E+ AR+  I RR+  
Sbjct: 70  AVCRRLRAESCVPIIFLSALESISERVAGLDLGADDYLPKPFSPKELEARIFTILRRVGS 129

Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +   E             G + V ++ R      E   L   E  +LE L  + G  V 
Sbjct: 130 GSATVEPREIPSGQGVMRVGDLVVDTNRRQVNRGTERIALTYTEFSLLELLFRDPGHVVP 189

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GYS
Sbjct: 190 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPEMILTVRGIGYS 241


>gi|332526928|ref|ZP_08403021.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332111370|gb|EGJ11354.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 223

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 109/224 (48%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG +      G +++   S    +   S+   D+  ++  L        
Sbjct: 3   ILIAEDDQVLADGLLRSLRASGYAVDQVGSGTEADAALSAHEFDLVILDLGLP--KLHGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +RA    VP++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR L
Sbjct: 61  DVLKRLRARGASVPVLILTAADSVEQRVKGLDLGADDYMAKPFSLQELEARVRALTRRGL 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
             +++  + GP+   + GR   +  ++  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GTASSVIKHGPLTFDATGRVAYLNDQMIELSARELSLLEVLLQRSGRLVSKDQLVERLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYIHRLRKKIEQ--GPVRIATVRGLGYCLE 219


>gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 254

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +           L  S   DV  ++  +        
Sbjct: 11  ILIADDEANIRRILETRLAMQGHQVAAAQDGTEALELFRSVEPDVVVLDVMMPE--LDGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   IRA S+VP+I ++    +   +   + G DD + KP   +E+ AR+  + RR   
Sbjct: 69  AVLERIRAQSEVPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRRASQ 128

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     S+N    G + V  + R     GE   L   E  +LE L++  G+ + + 
Sbjct: 129 GQGGSSVGSASSNVIAVGDLSVDFNRRQAFRCGERIRLTGMEFHLLELLISRNGEPINRL 188

Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +  A++G   + A +  VV+ HIS+LR KL  + L  + + + R +GY  
Sbjct: 189 DMLEAVWGYKPERASDSRVVDVHISRLRGKLEPDPLNPELILTARGMGYMF 239


>gi|283832502|ref|ZP_06352243.1| DNA-binding response regulator BaeS [Citrobacter youngae ATCC
           29220]
 gi|291072167|gb|EFE10276.1| DNA-binding response regulator BaeS [Citrobacter youngae ATCC
           29220]
          Length = 240

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDLVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSEVPIMMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ V         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQMDADSPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|126657980|ref|ZP_01729132.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620618|gb|EAZ91335.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 231

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            +L++D   +      +       ++     E    L         +   +  L      
Sbjct: 3   ILLVEDENDLGTAIKRVLIQHNYIVDWAKDGEEANDLIEMGLNLYTIGIFDWLLP--KIS 60

Query: 60  VLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            ++L + IR   S +P++ ++     +  +   D+G DD + KP    E+LAR+ A+ RR
Sbjct: 61  GIDLIKKIRQQNSSLPILMLTAKDREEDKVIGLDAGADDYLVKPFGMAELLARLRALQRR 120

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQ 172
              ++  +   G I +         +      +  PL  +E ++LEY M +  + V + Q
Sbjct: 121 FPTINPQKLTVGHITLDYSNYTIFYRDQMGKHQPIPLTNKEFQLLEYFMKHPNQIVTRDQ 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + S ++   +E +  NVV + I  LR+KL    G + +++   LGY    N
Sbjct: 181 LLSQLWEWGNEPM-SNVVAAQIRLLRRKLEPHCGDNYIETVYGLGYRFIIN 230


>gi|71737739|ref|YP_275609.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298487905|ref|ZP_07005945.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71558292|gb|AAZ37503.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298157630|gb|EFH98710.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325046|gb|EFW81115.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320327849|gb|EFW83855.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330988750|gb|EGH86853.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 220

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G +L+     +    L +   E    +   L        
Sbjct: 3   LLLVEDDRAIGQGIRVALNTEGYTLDWLE--DGLSALHALRSEPFDLLLLDLGLPRMDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +    QG   P+   E ++L  LM   GK V + ++ + +YG
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E  I  LRKKL      + + + R +GY ++
Sbjct: 181 WQDK-VESNTLEVLIHNLRKKL----STELIRTVRGVGYLLE 217


>gi|148543652|ref|YP_001271022.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184153066|ref|YP_001841407.1| two-component system response regulator [Lactobacillus reuteri JCM
           1112]
 gi|227363377|ref|ZP_03847503.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325682015|ref|ZP_08161533.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|148530686|gb|ABQ82685.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224410|dbj|BAG24927.1| two-component system response regulator [Lactobacillus reuteri JCM
           1112]
 gi|227071566|gb|EEI09863.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324978659|gb|EGC15608.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 239

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 106/236 (44%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +    E  ++ +E EE +     + D+  ++  L  K   
Sbjct: 3   ILMIEDNHSVCEMMAMFFKKEKWHCEFAYDGVEAEEKFNADPHKWDIILLDLNLPKK--D 60

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++   IR  S  VPLI ++   +    +   + G DD V KP     ++AR+ A+YRR
Sbjct: 61  GMQVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSTITLIARIKALYRR 120

Query: 119 LKVSNNR------------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRG 165
             ++                +T   ++ +  R+  + G+    L  +E  +L+ L +   
Sbjct: 121 THLNKLEDVQDTDSDDTFDIQTKNFKMNTKTREVFLYGKPVGDLTPKEFDLLKTLASKPR 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++Q+   ++  ++   +E  V++HI KLR+KL N +G   + +   +GY  D
Sbjct: 181 QVFTRSQLLQLVWD-YEYYGDERTVDAHIKKLRQKLEN-IGPQVIKTVWGVGYKFD 234


>gi|262044958|ref|ZP_06018000.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037685|gb|EEW38914.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 229

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++    + D  + +   +G  +  F          +    DV+ ++  L        
Sbjct: 6   IWLVEYEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGLPD--ISGF 63

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +   +  +P++ ++        L   + G DD + KP   RE+ ARV  + RRL+
Sbjct: 64  ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G   +          G+   L R E  +L+ L+   G+  ++ Q+   +
Sbjct: 124 KFAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    E+++   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 184 WSDAWESLD-RTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226


>gi|229589098|ref|YP_002871217.1| heavy metal two component system, response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229360964|emb|CAY47824.1| heavy metal two component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 226

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+            + G + E        + L  +   D+  ++  L   G    
Sbjct: 3   LLIVEDQPKTGQYLRQGLTEAGFTTELVADGTSGQHLALTGAYDLLILDVMLP--GRDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +R A   +P++ ++   +++  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQAVRTAGLDIPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   +R+    R  E  G+   L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 STPQETALQLADLRLDLIRRRVERDGQRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N++E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNIIEVAIRRLRLKVDDNFPNKLIHTVRGMGYVLE 222


>gi|251794486|ref|YP_003009217.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542112|gb|ACS99130.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 240

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 100/229 (43%), Gaps = 15/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D  +++D       ++G S+    + E    +      DV  ++  L       + 
Sbjct: 5   LVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPD--MDGMG 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           +   IR  S VP++ +S    +   +    +G DD + KP    E+ ARV A+ RR +  
Sbjct: 63  VCASIRERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQFS 122

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                         A+  PI++ S+ R   V+G++      E  +++  +++ GK  ++ 
Sbjct: 123 ATEAEAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           ++ + I G FD  V +  ++ HI  LRKK+  N      + +    GY 
Sbjct: 183 ELINTIRG-FDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYK 230


>gi|71909179|ref|YP_286766.1| phosphate regulon transcriptional regulatory protein phoB
           [Dechloromonas aromatica RCB]
 gi|71848800|gb|AAZ48296.1| Phosphate regulon transcriptional regulatory protein phoB
           [Dechloromonas aromatica RCB]
          Length = 228

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +    S E  E    +A  D+  ++  L   G+  +
Sbjct: 5   ILVVEDEPAIQELVTINLKHAGFLVVRAGSAEEAESAIRAALPDLVILDWMLP--GQSGV 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + IRA     ++P+I ++     +  +   ++G DD + KP   +E++ARV A+ RR
Sbjct: 63  ALAKKIRADERTRELPIIMLTARVHEEDKVQGLEAGADDYITKPFSPKEMVARVRAVLRR 122

Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++    E G + +          G+   L   E R+L + M +  +   + Q+   
Sbjct: 123 RAPHLAGEAVEIGTLALNPATHRVLASGQPIELGPTEFRLLFFFMTHAERVYTRAQLLDE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     +EE  V+ HI +LR  L N    + V++ R  GY  
Sbjct: 183 VWGDH-VFIEERTVDVHIRRLRAALENSGNHERVETVRGTGYRF 225


>gi|317124213|ref|YP_004098325.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588301|gb|ADU47598.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 247

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 94/236 (39%), Gaps = 21/236 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGEK 59
           +++DD A ++    A    DG  +    +        ++A   R D++ ++  L      
Sbjct: 6   LVVDDEAQIRTVLRAYLEADGFVVSEAGTGGEALRQMTTANGQRPDLALLDVGLPD--LD 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+ R +RA S + +I ++        L     G DD + KP   RE++ARV  + RR 
Sbjct: 64  GLEVLRRVRAQSDLFVILVTARSEEVDKLVGLGIGADDYITKPFSPREVVARVKTVLRRR 123

Query: 120 KVSN--------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
             +               N      + +  D R+     +   L   E  +L       G
Sbjct: 124 HEAGAPDVGPDVDPATVANILRFEGLTIDEDRREVTTASDPVTLSTLEFDLLVAFAEAPG 183

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +  ++ Q+   ++G +D   +E V++ HI  LRK L  +      + + R +GY  
Sbjct: 184 RVFSRAQLLEKVWG-YDFYGDERVIDVHIRSLRKALADDASSPRVIGTVRGVGYKF 238


>gi|300856180|ref|YP_003781164.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300436295|gb|ADK16062.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 242

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   + D    +   +G   ++  +       +  S R D+  ++  L       
Sbjct: 11  ILLIDDEEDITDLIEDILLKEGFKNIKKAHCGLDGVKICQSERTDIVVLDIMLPD--IDG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ + IR  S  P++ +S   S    +     G DD + KP   REI  R+ A  RR +
Sbjct: 69  IEVCKRIRQFSYCPILFLSAKNSDVDKIVGLSMGGDDYITKPFSPREIAFRIKAQLRRQQ 128

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     G I +          G    L  +E ++L YL  N  K V K 
Sbjct: 129 YDGIKEVKSSENENIIIGSITIDKLHSQVYKDGSEVKLTAKEYKLLLYLAENSNKIVNKE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++   ++G  D    +N +  HI  LR+KL  N    + + +   LGY +
Sbjct: 189 RLCEVVWG-DDYFGYDNTISVHIRHLREKLEKNPSKPEIIVTVIGLGYKL 237


>gi|227506355|ref|ZP_03936404.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197006|gb|EEI77054.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 234

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +   NS      +      D   ++  +   G    E
Sbjct: 10  LVVDDEPNIVELLTVSLKFQGFEVFSANSGTEALRVAREVNPDAYIMDVMMP--GMDGFE 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L   +R      P++ ++   S+   +     G DD V KP    E++ R+  I RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGAN 127

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                ++       + +  D  +    GE+  L   E  +L YLM N+   ++K++I   
Sbjct: 128 VDDVNNDATISYADLTLNDDTHEVTKGGEIVELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGDTQLIHTVRGVGYVL 229


>gi|161502712|ref|YP_001569824.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864059|gb|ABX20682.1| hypothetical protein SARI_00761 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 240

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLIIDYLRAASYTPTLINHGDKVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +          G+   L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQLDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|260589582|ref|ZP_05855495.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Blautia hansenii DSM 20583]
 gi|260540150|gb|EEX20719.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Blautia hansenii DSM 20583]
          Length = 235

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 101/229 (44%), Gaps = 11/229 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
           ++IDD   +          + +S +  ++ +E  + + ++      S I   ++      
Sbjct: 5   LIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMPYMNG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ + IR  S +P++ ++   + +  +     G DD + KP    E+ ARV ++ RR  
Sbjct: 65  FQVLKKIREVSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSLIRRYT 124

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N              + +    R   V+G +  L  +E  +L +L +N+G+   K QI
Sbjct: 125 TLNPAFSEETDCICLKDMTIDRGNRSVTVRGALVELTGKEFDLLVFLASNKGRIFTKKQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++ ++   + A +++ + S ISKLRKK+         V + R +GY  +
Sbjct: 185 YTQVW-EDEYAFDDSNIMSFISKLRKKIEPNPEQPFYVLTVRGVGYRFN 232


>gi|83945597|ref|ZP_00957943.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850963|gb|EAP88822.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 228

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 104/220 (47%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   ++     +    G +++     E   +L  +   D   ++  L    G  VL
Sbjct: 4   LIVEDDPDLRRQLSDVLTHSGYAVDTAADGEDGLFLGETEPYDAIVLDLGLPKLDGVTVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E  R   A    P++ ++        +  FD+G DD + KP H  E+LAR+ A+ RR   
Sbjct: 64  E--RWRDAGMSAPVLILTARDRWSEKVAGFDAGADDYLTKPFHPEELLARLRALTRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++    G + + + G    +  ++  L   E R+L YLM +R + +++T++   IY  
Sbjct: 122 HSSSTLMCGDLSLDTRGSRVFLGDQLIKLTSHEFRMLSYLMHHRDRVISRTELVEHIYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  + +LRKK+    G + +++ R LGY +
Sbjct: 182 -DFDRDSNTIEVFVGRLRKKI----GSNRIETVRGLGYRL 216


>gi|304405929|ref|ZP_07387587.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345172|gb|EFM11008.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 259

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 100/246 (40%), Gaps = 32/246 (13%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +    + +  E ++ +  E    +   L+   +   
Sbjct: 5   ILVVDDEQPIADILKFNLEKEGYEV--ICAFDGGEAVRLAYEERPDLMLLDLMLPVKDGT 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA  Q+P+I ++   +    +   + G DD V KP   RE+LARV A  RR K 
Sbjct: 63  DVCREVRAGLQLPIIMLTAKDTELDKVLGLELGADDYVTKPFSTRELLARVKAQLRRQKK 122

Query: 122 SNNRAE----------------------------TGPIRVFSDGRDPEVQGEVFPLPRRE 153
           ++   +                               + + +D        E   L  RE
Sbjct: 123 ASEAVQEAQSAAADAIAGGAAGAAAAEPEKNGLTIFNLFIDTDMYVVYKNNEPLDLTHRE 182

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDS 212
             ++ YL  N GK + +  +  A++G F+   +   V+  + +LR+K+ +     + + +
Sbjct: 183 YELVYYLARNSGKVMTREHLLQAVWG-FEYFGDVRTVDVTVRRLREKIEDDPSRPEYIMT 241

Query: 213 KRFLGY 218
           +R LGY
Sbjct: 242 RRGLGY 247


>gi|326789251|ref|YP_004307072.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540015|gb|ADZ81874.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 234

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G  +   ++             D+  ++  L   G    
Sbjct: 5   LLIVEDDEQIADILREYLMNKGYEVNWASTGNEGLEDFKMKMYDLLIVDIMLP--GMDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S VP++ IS        +     G DD V KP    E+ AR+ ++ RR K 
Sbjct: 63  SLCQSIRWVSDVPILIISARNKELDKIKGLKIGADDYVTKPFSLPEVEARIESLLRRYKR 122

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N+  E        G + +  + +   +  E   L   E  +L  L  N  +   K +++
Sbjct: 123 MNSSEEQEEIHHYEGGLSINFNRKQAYLNEEELNLTATEWALLTILAKNPQRPFTKKELY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             I+   D     N +  HI +LR KL  +      +++   +GY  
Sbjct: 183 EHIWHEEDIE-SSNTITVHIKQLRNKLKEDSKNPKFIETAWGIGYRF 228


>gi|225377346|ref|ZP_03754567.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM
           16841]
 gi|225210877|gb|EEG93231.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM
           16841]
          Length = 240

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++DG        G  +  + + +  E LQ   +E +      ++      +
Sbjct: 11  ILVVEDDKEIRDGIEIFLKSQGYHV--YKAADGVEGLQIIEKEPIHLAIVDIMMPRMDGV 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R H + P+I +S        +   + G DD V KP    E++ARV +  RR   
Sbjct: 69  TMTIKLREHHEFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRRYTR 128

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
               A+           G + +  D  +  V G    L   E +IL  LM N G+  +  
Sbjct: 129 FMGMAQKKEEEGRNYVIGGLELNEDTIEFSVDGNPVKLTPIEFKILALLMRNPGRVFSTE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +I+  ++   ++A+  + +  H+  +R K+  N      +     +GY I+
Sbjct: 189 EIYERVWN--EKAINTDTIMVHVRNIRDKIEINPREPKYLKVVWGVGYKIE 237


>gi|206974598|ref|ZP_03235514.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206747241|gb|EDZ58632.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 225

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +  F + + +   +   +E++      ++       
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKV--FEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADMITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [Corynebacterium glutamicum R]
 gi|140846523|dbj|BAF55522.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 240

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G ++   N       +    R D   ++  +   G    E
Sbjct: 17  LVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMP--GMDGFE 74

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R+     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 75  LLTKLRSEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGA 134

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++   +   + +  +  +    GE+  L   E  +L YLM N    ++K +I   +
Sbjct: 135 VEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKILDNV 194

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES+IS LR+K+  +     + + R +GY +
Sbjct: 195 W-HYDFGGDGNVVESYISYLRRKVDTQ-EPQLIQTVRGVGYVL 235


>gi|90423350|ref|YP_531720.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105364|gb|ABD87401.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 240

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D  +  F + G   +     E    L  S   DV  I+  L  +    L
Sbjct: 18  LLIIEDDRESADYLVKAFREVGHVADHAADGEEGLALADSGDYDVLVIDRMLPKR--DGL 75

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R +    P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 76  SVIGTLRDNGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +           E   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 136 GPAEETSYKVGDLELDRLSHRVARGDEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 196 D-YHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMI 236


>gi|294629736|ref|ZP_06708296.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292833069|gb|EFF91418.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 234

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  V  +   L   G   LE
Sbjct: 14  LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGMQGGVDLVVLDLGLPGMDGLE 71

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 72  VARRLRADGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 131

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +   T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 132 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 191

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 192 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 232


>gi|94971080|ref|YP_593128.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553130|gb|ABF43054.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 226

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A V+      F   G  +    + +    +Q+       A+   L   G+   
Sbjct: 4   ILVIEDDATVQKALRRTFESAGFEV--VVAPDGATAVQTFQATSPRAVLLDLRLPGKSGQ 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR  S  VP++ +S    +   +   + G DD V KP   RE+LARV    RRL 
Sbjct: 62  DICREIRGFSPNVPILVLSAASDVVDKVLLLELGADDYVTKPFSPRELLARVRTALRRLI 121

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S ++ E      I+V     +    G+   L  +E ++L + + N+ + V++ ++ + +
Sbjct: 122 PSIDKQEVYNFDEIQVDFGKMELLRSGQPVALTPQEFKMLRFFLNNKDRVVSRNELLNEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220
           +G +        V++HI +LR+KL      DP+   +    GY  
Sbjct: 182 WG-YHSYPTTRTVDTHILRLRQKLERDPA-DPIHFRTVHGTGYKF 224


>gi|167585588|ref|ZP_02377976.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 220

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     +    L +   E    +   L       +
Sbjct: 3   ILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDA--ALTALGGEAYDLLLLDLGLPKRDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGLALPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 216


>gi|160914841|ref|ZP_02077055.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991]
 gi|158433381|gb|EDP11670.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991]
          Length = 246

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +    +   + +      S+   D+  ++  L  K    +
Sbjct: 7   ILIVEDDGPIRNLIATALQTNAYKYDLAANGKTALLALSTHHYDIVLLDLGLPDK--DGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S  P+I IS   + +  +   D+G DD + KP    E+LARV +  RR + 
Sbjct: 65  EIIDQLRTFSTTPIIVISARTNDEDKIAALDAGADDYLTKPFSVEELLARVRSTLRRAQF 124

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N+         E G +++    R    QG+   L   E  +L  L  N G+ +    I
Sbjct: 125 LENQKSQREEIAFENGDLKIDYPSRTVYFQGKELHLMPIEYNLLCLLAHNVGRVLTHQYI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++       + + +  +++ LRKK+        + +   +GY +
Sbjct: 185 LDKVW-TNAMESDLSSLRVYMTTLRKKIEKNSMQKYIQTHIGVGYKM 230


>gi|254247310|ref|ZP_04940631.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124872086|gb|EAY63802.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 300

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 60  ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLP--KMSGL 117

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 118 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 177

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 178 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 237

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++  LRKK+        + + R LGY ++
Sbjct: 238 WG---EEVSNNAIEVYVHGLRKKIEPSG--VRISTVRGLGYCLE 276


>gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 232

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +  ++           +  S   D+  ++  L   G   +
Sbjct: 5   ILVIEDEEGISRVLQLELEHESYTVGVAEDGRKGLEMAQSGEWDLVLLDVMLP--GLNGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R     VP+I ++   ++   +  F+ G  D V KP    E+LARV  I R   
Sbjct: 63  EVLRRLRQGGNTVPVILLTARDTVPDKVSGFEHGASDYVTKPFAMEELLARVRNILRIFA 122

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 E       G + V    R    +     L  RE  +L YL  ++ +  ++  I 
Sbjct: 123 QHTKEVEGADLIKVGDLTVELRTRKVFRKELAVDLTPREFELLVYLAEHKNEEKSREDIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G +D   E N+V+ +I  LR+KL     +  + + R +GY +
Sbjct: 183 SEVWG-YDFIGETNLVDVYIRYLRQKLDKGFRYKLIHTVRGVGYML 227


>gi|283457122|ref|YP_003361686.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133101|dbj|BAI63866.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 247

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++K+         G  ++          +    R DV  ++  +   G   LE
Sbjct: 26  LVVDDEEMLKELVSMGLKMIGWEVQSAGDGPSALAIARDWRPDVLVLDIMMP--GFDGLE 83

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IR  + +VP + ++   S+   ++   +G DD V KP    E++ R+  + +R  V
Sbjct: 84  LLSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSGV 143

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G + +  D R+    GE   L   +  +L YLM N  + V+K+QI   ++
Sbjct: 144 ASIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDNVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+   +G +P + + R  GY +
Sbjct: 204 N-YDFGGQANIVELYISYLRKKID--VGREPMIHTVRGAGYVL 243


>gi|228996926|ref|ZP_04156559.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229004602|ref|ZP_04162340.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228756643|gb|EEM05950.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228762805|gb|EEM11719.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 250

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D  +     +    +    +      L  +   D+  ++  L       
Sbjct: 17  ILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVMLPD--IDG 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            EL R IR ++  P++ ++   S    L     G DD + KP +  E+ AR+    RR  
Sbjct: 75  FELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQQ 134

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K  ++        ++       V G+      +E  +L +L  +  +     Q+
Sbjct: 135 MLIRHHKEEHSNLHFESFSLYPSEGLITVNGKSVHCTAKELELLTFLCTHPNRIFTAEQL 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +  ++GL     ++  V  HISKLRKK+  +      + + R +GY  
Sbjct: 195 YEQVWGLT-SMGDDKTVVMHISKLRKKIEEDPKSPTYIVNLRGIGYKF 241


>gi|157146841|ref|YP_001454160.1| DNA-binding transcriptional activator CusR [Citrobacter koseri ATCC
           BAA-895]
 gi|157084046|gb|ABV13724.1| hypothetical protein CKO_02615 [Citrobacter koseri ATCC BAA-895]
          Length = 232

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 8   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIMLPDV--NGW 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 66  DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + +    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 126 AVMVESQFQVADLTLDLVSRKVTRNGMRITLTSKEFTLLEFFVRHQGEVLPRSLIASQVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N+     + + R +GY ++ 
Sbjct: 186 DM-NFDSDTNAIDVAVKRLRAKIDNEFEPKLIQTVRGVGYVLEV 228


>gi|153956151|ref|YP_001396916.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856477|ref|YP_002473599.1| hypothetical protein CKR_3134 [Clostridium kluyveri NBRC 12016]
 gi|146349009|gb|EDK35545.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219570201|dbj|BAH08185.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 232

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +  G        G  ++   +    E L ++ + D+  ++  L        
Sbjct: 4   IFFVEDDFSLISGLSFAMKKQGYEIDVARTSLEAESLWTNGKYDLVILDVSLPD--GSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L + IR  S+VP++ ++        +   D G DD + KP      ++R+ A+ RR   
Sbjct: 62  DLCKKIRKTSKVPIMFLTAADEETNIIMGLDIGGDDYITKPFKLAVFMSRINALLRRSDN 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++    +  I+V     +    GE   L   E ++L   M N    ++  QI S ++
Sbjct: 122 FNQADTELNSNDIKVQLLKGEVYKNGEQLDLTASEYKLLCLFMENPDIVLSSEQILSKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
              +  ++ N +  +I +LR K+ +  G    + + R +GY   WN
Sbjct: 182 DCNENYIDNNTLTVYIRRLRTKIEDDPGKPQKIVTVRRMGYK--WN 225


>gi|221068907|ref|ZP_03545012.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220713930|gb|EED69298.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 235

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          +G+++   +SL   +  Q  +R     +   +       L+
Sbjct: 12  LLLEDDPAIARTVCYALEREGIAVT--HSLLIADARQQWSRTTFDVLLMDVGLPDGNGLD 69

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +R A S VP++ +S        +   + G DD + KP   RE+LAR  A+ RR K 
Sbjct: 70  WCRELRSAGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRRSKQ 129

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               A       +++   G+   +      L RRE ++L+ L+   G+ +++  +   I+
Sbjct: 130 FQPAAPAQLAKALQIDEQGQRALIHSRALDLTRREYQLLQSLVNAAGRILSRDALLEQIW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           GL D    +  V++HI  LR KLR +L   + + + R LGYS++
Sbjct: 190 GL-DSESTDRTVDTHIKTLRAKLRERLPDQELIVTHRGLGYSLN 232


>gi|56540563|gb|AAV92735.1| PmrA [Escherichia coli]
          Length = 222

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELILGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYMLVAN 219


>gi|312126506|ref|YP_003991380.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776525|gb|ADQ06011.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 221

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +         ++G ++   NS   ++ L+     D+  ++  L     +  
Sbjct: 4   ILVVEDQQDLNQIITRFLKNEGFNV--INSYTAKDALEKLNDTDLVILDIMLPD--MEGY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +   +   +P I ++        L  F+ G +D + KP    E++ARV  + RR + 
Sbjct: 60  EVLKEA-SKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRN 118

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G + +F       V GE   L  +E  +L +L  N+    ++ +I   ++G
Sbjct: 119 FEESIKLLGGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   E   V+ HI +LR+KL++      + +   +GY +
Sbjct: 179 -FDFIGETRTVDVHIKQLREKLKDY--KFLIKTVWGVGYKL 216


>gi|253682308|ref|ZP_04863105.1| regulatory protein VanR [Clostridium botulinum D str. 1873]
 gi|253562020|gb|EES91472.1| regulatory protein VanR [Clostridium botulinum D str. 1873]
          Length = 232

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+ +  + + +  + L     E++  I   ++      ++
Sbjct: 7   LVVDDDKEIREAIKIYLKNEGLKV--YEAQDGIDALMILQEEEIHLILMDIMMPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIREKKDIPIIMLSAKSEDTDKVLGLNIGADDYVTKPFNPLELIARVKSQLRRYVKF 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K++    + G I +    +   V GE       E +ILE+LM + G+  +  QI+  
Sbjct: 125 SNYKINKEELKVGGIILNKIAKRVTVDGEEIRFTPIEYKILEFLMESIGQVFSIKQIYEN 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 VWNEPCYNAE-NTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKI 228


>gi|220925326|ref|YP_002500628.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219949933|gb|ACL60325.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 228

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G   +          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAASYLSKAFREAGHVADLAADGLDGYALAREGDYDVLVVDRMLP--KLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R    + P++ +S    +   +    +G DD + KP    E+LAR+  + RR  
Sbjct: 61  SLIRSLREQGVETPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARIEVLARRRG 120

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +          G+   L  RE R+LEYLM + G+ V +T +   +
Sbjct: 121 GGAGEPTAYRVGDLELDRLSHRVTRGGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H+S+LR K+        + + R  GY +
Sbjct: 181 WD-YHFDPQTNVIDVHVSRLRAKVDKGFERPMIHTVRGAGYMV 222


>gi|161507847|ref|YP_001577811.1| two-component system regulator [Lactobacillus helveticus DPC 4571]
 gi|260103140|ref|ZP_05753377.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|160348836|gb|ABX27510.1| Two-component system regulator [Lactobacillus helveticus DPC 4571]
 gi|260083050|gb|EEW67170.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|323466118|gb|ADX69805.1| Two-component system regulator [Lactobacillus helveticus H10]
 gi|328464789|gb|EGF36104.1| two-component system regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+    + L+ +  +D  AI   L+      L
Sbjct: 4   ILIIEDEKNLARFVELELQHENYETVVENNGR--KGLEDALNQDFDAILLDLMLPDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+K+
Sbjct: 62  EIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAK 170
                          +   + + +  R      G+   L +RE  +L  L+ N+   V++
Sbjct: 122 EKDASRVTVAKQKIVKFKNLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R +GY +
Sbjct: 182 DQLLNKIWGP-ESNIETNVVEVYVRYLRNKIDVPGQPSYIKTVRGIGYMV 230


>gi|134296824|ref|YP_001120559.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139981|gb|ABO55724.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 220

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ DG       DG +++     +    L +   E    +   L       +
Sbjct: 3   ILLVEDDRMIADGVRKALRADGFAVDWVQDGDA--ALTALGGETYDLLLLDLGLPKRDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    GP+ +        + G    L  RE  +LE L+   G  ++K+Q+   +YG
Sbjct: 121 GRSESLIRHGPLTLDPASHQVTLDGAPVALSAREFALLEALLVRPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 216


>gi|77459117|ref|YP_348623.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383120|gb|ABA74633.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
          Length = 233

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   +    +G S+      +           D+  ++  L   G   L
Sbjct: 4   ILLVEDDTALAELISSYLERNGYSVSVIGRGDHVRERARLNPPDLVILDLMLP--GLDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++RA S   P++ ++        +   + G DD V KP   R +LARV  + RR  
Sbjct: 62  QVCRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +N+R   G + +    R    + +   L   E  +L  L  + G+ +++ QI  
Sbjct: 122 LGEPMTANDRILMGNLCIDLSERTVTWREQPVELSSGEYNLLVVLARHAGEVLSRDQILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            + G+ +    +  V+  ISKLR+K  +  G    + +    GY
Sbjct: 182 RLRGI-EFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGY 224


>gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 249

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +       D+G  ++  +N  +  E L      D+  ++  +       
Sbjct: 27  ILIADDDREIVEVMDDALRDEGFETVRAYNGKQVLEQLSGEKPIDLFILDIMMPE--MDG 84

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           LE  R IR  +  P++ +S        +     G DD V+KP    E++ARV A  RR  
Sbjct: 85  LETLRHIRERTDAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAHLRREN 144

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S      G +++       EV G+   L  +E +IL YL+ N G+ V++ QI++A+
Sbjct: 145 KHRQSAPVTGIGALKLDPSSWTVEVDGKPVELSGKEFQILSYLLINAGQTVSREQIYAAV 204

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +       + + V  HI  LR KL  +     + +   +GY ++
Sbjct: 205 W-KDAFGGDLSTVTVHIKNLRDKLGAEG--RRIRTVWGIGYRLE 245


>gi|307298631|ref|ZP_07578434.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915796|gb|EFN46180.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 215

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 8/219 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +        G +G  +E     +           D+  ++  L   G     +
Sbjct: 2   VVEDDMHIGKLLRLELGHEGYEVEVLTDGKEALKHLEKELPDLLILDVMLP--GLDGFSV 59

Query: 64  PRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              IR +  + +P+I ++    ++  +    SG DD + KP    E+LAR+ A+ RR K 
Sbjct: 60  LEEIREYISTDLPVIMLTAKGEVKDRIRGLKSGADDYLPKPFVIEELLARIEAVLRR-KG 118

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R     I +    R+  + GE   L + E  +L  L++N G  ++K ++   ++G  
Sbjct: 119 KVERISYFEITLDMQSREAFLNGEPLQLSKTEFDLLAVLLSNAGIVMSKERLLEKVWGSE 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     NVVE +I+ LRKKL      + + + R  GY +
Sbjct: 179 DW-GNPNVVEVYINYLRKKLGKTG--ERIKTVRGSGYVV 214


>gi|291537171|emb|CBL10283.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 271

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + + EE L+     +V  +   ++      +
Sbjct: 45  ILVCDDDKEIVEAIEIYLQQEGYHI--LKAYDGEEALEILKENEVHLLIMDVMMPRLDGI 102

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 103 RATLKIREESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQ 162

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N AE        G + +  D ++  V GEV  L   E  IL  L+ N+GK  +  QI+
Sbjct: 163 LGNAAENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIY 222

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            +I+   D    +N V  HI  +R+K+  N      +     +GY ID N
Sbjct: 223 ESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 271


>gi|259047740|ref|ZP_05738141.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035931|gb|EEW37186.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 236

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 106/232 (45%), Gaps = 17/232 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAFLIGKGEKV 60
           ++I+D   V +     F ++G     ++  +  F+ ++++ ++  +  ++  L       
Sbjct: 5   LMIEDTEAVCEMMEMFFENEGWKASFYHDGKEGFDAFMENQSKWGIVILDVNLPS--MDG 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R IR  +Q VP++ ++   S    +   + G DD V KP     I+AR+ A+ RR 
Sbjct: 63  MQICRQIRQVNQAVPIVMLTARDSESDQVIGLEIGADDYVAKPFSAVTIMARIKALLRRT 122

Query: 120 KVSNNR---------AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVA 169
           + S+            ET  +++ +   +  + G+    L  +E  +L  +  ++ +   
Sbjct: 123 QRSSASGSGALSTFDVETDHVKINTKTHEAFIDGKQIENLTPKEFDLLMVMAKHQRQVFT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  + + I+       +E  V++HI KLR+K+   +G   + +   +GY  D
Sbjct: 183 REHLLTKIW-EDPFYGDERTVDAHIKKLRQKIE-AVGPHVIHTVWGVGYKFD 232


>gi|220906986|ref|YP_002482297.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863597|gb|ACL43936.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 228

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G              L      D+  ++  L   G+  L
Sbjct: 4   ILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLP--GQDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           ++   +R   + +P+I ++    ++  +  F+ G DD + KP    E+L RV A  R   
Sbjct: 62  QVLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNY 121

Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   +  +   + +    R  +V      L  RE  + E    + G+ +++ Q+  
Sbjct: 122 GVPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLD 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D     N+V+ ++  LRKKL    G + +++ R +GY +
Sbjct: 182 RVWG-YDYDPGSNIVDVYVGYLRKKL----GNELIETVRGMGYRL 221


>gi|78211661|ref|YP_380440.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78196120|gb|ABB33885.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 253

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 98/231 (42%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V+   +      G  +      E    +  +   D+  ++  L        
Sbjct: 13  ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEEALEMYHNESPDLVVLDVMLP--KLDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR++ I RR+  
Sbjct: 71  AVCRRLRAESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARISTILRRVGR 130

Query: 122 SNNRAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            N   E+            G + V ++ R      E   L   E  +LE L  + G  V 
Sbjct: 131 GNAVIESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVP 190

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 191 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241


>gi|332638568|ref|ZP_08417431.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 237

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 96/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +    S +      ++   D+  ++  L   G+  +
Sbjct: 4   ILVVDDEPSLVTLLSYNLTKSGFEVVTATSGDEARNQLANHPIDLMLLDVMLP--GKSGV 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R   +++P+I I+        +   + G DD V KP   RE++ARV A+ RRL 
Sbjct: 62  DLTRELRGEQNRIPIIMITALDDEVDKILGLEIGADDYVTKPFSPREVIARVRAVLRRLD 121

Query: 121 VSNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          + G + +  D    + QGE+  L  +E  +L Y+    G+ + + 
Sbjct: 122 KQQEPQVAKTPTKLKQFGNLTIDFDKMVVQRQGEIVKLTPKEYELLAYMADREGRVLDRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            I   ++G      +  +V+ H+S LR K+ +       + + R  GY  D
Sbjct: 182 TILHGVWGYDYAGPDTRMVDMHLSHLRDKVEDDPKHPVHLKTVRGFGYRFD 232


>gi|331003431|ref|ZP_08326930.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412477|gb|EGG91866.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 231

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 11/229 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD   + D        +G  +    + + EE ++  A+  V  +   ++      
Sbjct: 3   LILVCDDDREIVDAIKIYLSGEGFEV--LTAYDGEEAIKLMAKNRVDLLIIDIMMPVLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +     IR +S VP+I +S        +   + G DD + KP +  E++ARV +  RR K
Sbjct: 61  IRATMKIRENSTVPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRRYK 120

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    + +   G + +  + ++  + GE+  L   E  IL  L  N GK  +  +I
Sbjct: 121 KLGNISIPESQKVVVGDLEIDDETKEVTIAGEMIKLTPIEYNILLLLAKNAGKVFSIDEI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 181 YEQIWNE-EAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIE 228


>gi|260435319|ref|ZP_05789289.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
 gi|260413193|gb|EEX06489.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
          Length = 262

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V+   +      G  +      E    +  +   D+  ++  L        
Sbjct: 22  ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEQALEMFHNESPDLVVLDVMLP--KLDGF 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+  
Sbjct: 80  AVCRRLRAESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGR 139

Query: 122 SNNRAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            N   E+            G + V ++ R      E   L   E  +LE L  + G  V 
Sbjct: 140 GNAVVESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVP 199

Query: 170 KTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           + +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GY
Sbjct: 200 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 250


>gi|229084804|ref|ZP_04217062.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228698487|gb|EEL51214.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 250

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D  +     +  S +    +      L  +   D+  ++  L       
Sbjct: 19  ILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPD--IDG 76

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR ++  P++ ++   S    L     G DD + KP +  E+ AR+    RR  
Sbjct: 77  FELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQH 136

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++                 ++       V  E      +E  +L +L  +  +     Q+
Sbjct: 137 MTQEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTAEQL 196

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +  ++GL     ++  V  HISKLRKK+         + + R +GY  
Sbjct: 197 YEQVWGLT-SIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKF 243


>gi|229160872|ref|ZP_04288862.1| Two-component response regulator vanR [Bacillus cereus R309803]
 gi|228622609|gb|EEK79445.1| Two-component response regulator vanR [Bacillus cereus R309803]
          Length = 242

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDQDIVRFVNANLMREGFKV--FSAHNGEEALEIINNNRIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSSDIDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNRNDAQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N    + + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPEFIQNIWGVGYKIE 241


>gi|261345981|ref|ZP_05973625.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM
           4541]
 gi|282565866|gb|EFB71401.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM
           4541]
          Length = 233

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G         +           D+  ++  L   G   +
Sbjct: 11  ILIVEDEPKLGQLLFDYLQAAGYVPALLMRGDEVIPYVQKHFPDLILLDLMLP--GMDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S VP+I ++        L   + G DD V KP   RE++ARV  I RR + 
Sbjct: 69  SVCRELRKFSDVPVIMVTAKTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRRCQN 128

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++      +   + +  +        ++  L   E R+L++L  N G   ++ Q+   +Y
Sbjct: 129 THTHSLEQQQKQLVIDENAFQVRYGDKLLELTPAEFRLLKFLSDNAGTVFSRDQLLDILY 188

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
                 V +  ++SH+  LR+KL         + S   LGY  D
Sbjct: 189 DDH-RIVTDRTIDSHVKNLRRKLEFLDPEKTFIRSIYGLGYRWD 231


>gi|218246759|ref|YP_002372130.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257059801|ref|YP_003137689.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218167237|gb|ACK65974.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256589967|gb|ACV00854.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 246

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILVIDDDAAISELVSVNLEMAGYDVNQAGDGIKGQALAVQLQPDLIMLDLMLPKV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     + +P++ ++     +  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDERTADIPVLMLTALGETKDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +     +   L   E  +L  L+   G+ V+ ++
Sbjct: 122 TDRIPQAAKHSEILNYGPLTLIPERFEAIWFQKTVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILKEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLE 230


>gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 224

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEV--LAAADGREALEKWNEGPDVLILDVMLPDT--DG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 120 KKTEAAVSHEVIEAGEIVICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 180 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 224


>gi|227431100|ref|ZP_03913158.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353140|gb|EEJ43308.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 229

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G   E  N       L      DV  ++  L       LE
Sbjct: 5   LIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPE--LNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R   + P+I ++   S+   +   D G DD + KP    E+LAR+ ++ RR+ + 
Sbjct: 63  VARRLREVKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRITIE 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      +R+  + R      ++  L +RE  +L  L+ N     ++ Q+  
Sbjct: 123 TETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            ++G F+  VE NVV+ +I  LR K+ +       + + R  GY +
Sbjct: 183 EVWG-FNSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVM 227


>gi|227546759|ref|ZP_03976808.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212721|gb|EEI80602.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 240

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 96/236 (40%), Gaps = 21/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
             ++DD   + +    +  ++G  ++   + L   E      + D+  ++  L   G   
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIV-KPDLILLDVMLP--GLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R IRA S VP+I ++        +   ++G DD V KP    E+LAR+ A +R  K
Sbjct: 61  TGVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAK 120

Query: 121 VSN---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
            +                N  E G I +          G+   L   E  +L  L A  G
Sbjct: 121 PAAEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAG 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           + +++  +   ++G ++ + +  +V  H+ +LR K+ +      +  + R +GY  
Sbjct: 181 EAISRPSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235


>gi|188589410|ref|YP_001921180.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|188499691|gb|ACD52827.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
          Length = 237

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +   +G +   + +   +E L    R     +   ++       
Sbjct: 5   ILIVDDEIEILKLLETVLKKEGFN-NVYTAKTLKEGLAEFNRVKPELVILDIMLPDGDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR+ S VP++ +S        +  F  G DD + KP   +E+  RV A  RR+  
Sbjct: 64  EICKDIRSKSNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVNY 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          + GP  +     +    G+   L  +E +IL  L  N+ + ++K 
Sbjct: 124 NNENLNENNTEEKIIKFGPYVLNESRAELIKNGKTIELTAKELKILSLLAHNQNQIISKE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +++  ++G  D    +N +  HI KLR+K+  +      + + R LGY +
Sbjct: 184 KLWDKVWGE-DYFGFDNTIMVHIRKLREKIEEDSSNPKYILTVRGLGYKL 232


>gi|159036736|ref|YP_001535989.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915571|gb|ABV96998.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 230

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D         G  +             ++   D+  ++  L   G   LE
Sbjct: 6   LVVDDDRTVSDVVCRYLEHAGYQVRHVGDGGAALAAVAAEPPDLVVLDLMLP--GVDGLE 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R +RA    +P+I ++        +     G DD ++KP   RE++ RV ++ RR   
Sbjct: 64  VCRRLRAQPGGIPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLRRSGG 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + V +  R   + G    L  RE  +L YLM +  +   + ++   +
Sbjct: 124 PRAAPATVLRDGALVVETGPRVARLHGHELTLTVREFDLLAYLMRHPVRAFRRAELLERV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      +++ V  H+ +LR+K+  +      + +   +GY  +
Sbjct: 184 WGWN--FGDQSTVTVHVRRLREKVEADPANPRRIVTVWGIGYRYE 226


>gi|153939744|ref|YP_001390056.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935640|gb|ABS41138.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318142|gb|ADF98519.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 232

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   + +G        G  ++   +    E L  + + D+  ++  L        
Sbjct: 4   IFFVEDDLSLINGLSFAIKKQGYEIDVARTSLEAEALWKNGKYDLVILDVSLPD--GSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L + IR  S+VP++ ++        +   D G DD + KP      ++R+ A+ RR   
Sbjct: 62  DLCKKIRKTSKVPIMFLTAADEETDIIMGLDIGGDDYITKPFKLAVFMSRINALLRRSNN 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++    +  + V     +    G+   L   E ++L   M N    ++  QI S ++
Sbjct: 122 FNQADTELNSNGMNVQLLKGEVYKNGKQLDLTASEYKLLCMFMENPDIVLSPEQILSRLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS---IDW 222
              +  ++ N +  +I +LR K+ +       + + R +GY    +DW
Sbjct: 182 DCNENYIDNNTLTVYIRRLRTKIEDNPGEPQKIVTVRRMGYKWSTVDW 229


>gi|78183737|ref|YP_376171.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168031|gb|ABB25128.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
          Length = 253

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V+   +      G  +      E    L  S   D+  ++  L         
Sbjct: 14  LVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLP--KLDGFA 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   
Sbjct: 72  VCRRLRAESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 131

Query: 123 NNRAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           N   E+            G + V ++ R      E   L   E  +LE L  + G  V +
Sbjct: 132 NAVVESRELPTGQGVLRLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 191

Query: 171 TQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            +I   ++G     A +  VV+ ++++LR KL  +    + + + R +GYS
Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYS 242


>gi|183984426|ref|YP_001852717.1| two-component transcriptional regulator TrcR [Mycobacterium marinum
           M]
 gi|183177752|gb|ACC42862.1| two-component transcriptional regulator TrcR [Mycobacterium marinum
           M]
          Length = 254

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  +E  ++             DV  ++  L       L+
Sbjct: 32  LLVDDEPALTNLVKMALHYEGWDVEIAHNGREAISKFDKISPDVLVLDIMLPDV--DGLQ 89

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + +R + +  P + ++   S+   +    +G DD + KP    E++AR+  + RR   
Sbjct: 90  ILQRVRDSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSSH 149

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++   + G +++ +  R+    G    L   E  +L +LM N  + +++T+I   +
Sbjct: 150 LAPPADESLKVGDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILDRV 209

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D A   ++V+ +IS LRKK+        + + R +GY +
Sbjct: 210 WN-YDFAGRTSIVDLYISYLRKKIDADREP-MIHTVRGIGYML 250


>gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630]
 gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13
           [Clostridium difficile]
          Length = 230

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + +       ++   +   +  +            +  ++  L        
Sbjct: 4   ILLIDDDKDLCNLLERELKNENFEVIVCHDGQTGLDTFKKQNYQLIILDIMLPA--MNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IR  + VP++ ++   S    +     G DD + KP    E +ARV ++ RR  V
Sbjct: 62  DVLTEIRKLNNVPVLMLTAKDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQSLIRRFTV 121

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            NN  E         +++    R   +      L  RE  +L +L +N+G+   K QI++
Sbjct: 122 FNNHTEENITLKFKGLQIDVTLRTVLLNDNQIYLTAREFDLLYFLASNQGRVFTKEQIYT 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            ++   + + ++  + S +SKLRKK++N KL  D + +   +GY  
Sbjct: 182 HVWNN-EYSYDDRNIMSFVSKLRKKIKNEKLDIDYIQTIHGIGYRF 226


>gi|223936259|ref|ZP_03628172.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895121|gb|EEF61569.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V +        +  +++  N       + S+   D+  ++  L        
Sbjct: 3   LLLVEDEKKVAEFVARGLRAERFAVDVCNDGLSGYEMASTYNYDLMILDLMLPT--LSGT 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +R  S QVP++ ++    +   ++ F++G DD + KP    E+L RV A+ RR  
Sbjct: 61  EILKRLRKQSSQVPVLVLTARDGMAEKIENFEAGADDYLTKPFAFAELLVRVKALLRRGT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++    G + +    +     G+   L  +E  +LEYL AN G+ +++T I   ++ 
Sbjct: 121 ANRSSVLHVGDLEIDRLTQQVRRGGKKIDLTSKEYGLLEYLAANAGRVLSRTMIVEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+V+ ++  LR K+ +      + + R +GYS+
Sbjct: 181 ES-FEGLTNIVDVYVRHLRSKVDSGYPCKLIRTVRGVGYSV 220


>gi|218895705|ref|YP_002444116.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228899336|ref|ZP_04063599.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|218542826|gb|ACK95220.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228860367|gb|EEN04764.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 225

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|165868373|ref|ZP_02213033.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|164715099|gb|EDR20616.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
          Length = 223

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +  F + + +   +   +E++      ++       
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGFKV--FEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 122 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|49481195|ref|YP_036138.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196039763|ref|ZP_03107067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|49332751|gb|AAT63397.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196029466|gb|EDX68069.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 229

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 62  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHDEKANTITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|150017764|ref|YP_001310018.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904229|gb|ABR35062.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+ +         G   E   + E       +   D+  ++  L  K     
Sbjct: 4   ILIIEDDKLIAELERDYLEVSGFKTEIAFNGEDGLNFALNREFDLILLDLMLPSK--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L + IR++ ++P++ ++        +  F+ G DD + KP    E++ARV A   R   
Sbjct: 62  QLCKEIRSNKEIPILMVTAKKDSVDKIKGFNLGADDYIVKPFDPSELVARVNAHLSRYDR 121

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    ++N       +++    R   V  +   L  +E  +L +L  N     +KT
Sbjct: 122 LTSMGKKDNINNGVMVFKRLKILKRERRVYVADKEVKLANKEFELLLFLATNSNIVFSKT 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   I+G+ D   +   V  HI+++R K+  +      +++    GY  
Sbjct: 182 ILLDRIWGM-DSFADVATVTVHINRIRDKIEEDSSNPQFIETVWGAGYRF 230


>gi|317048819|ref|YP_004116467.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316950436|gb|ADU69911.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 235

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 5/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +    I             +  +  E L    +     +   L+  G   
Sbjct: 9   LILVVEDEPKLAQLMIDYLQASNYRTH--HIGDGSEVLSYVQQTPPDLMLLDLMLPGRDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR  S +P+I ++        L   + G DD + KP   RE++ARV  I RR+K
Sbjct: 67  LTLCREIRRFSDLPIIMVTARTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRVK 126

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S   A +   + +         + +   L   E R+L+ L    GK  ++ Q+ + +Y 
Sbjct: 127 RSPEEAQQASHLLIDESRFQASWREQQLELTPAEFRLLKTLALEPGKVFSREQLLNHLYD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
            +   V +  ++SHI  LR+KL +     P + +   +GY  + +
Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLESLDAEQPFIRAVYGMGYRWEAD 230


>gi|309388597|gb|ADO76477.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 225

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +       F  +   +  F + + ++ L+     ++  I   L+   +  L
Sbjct: 6   ILIIDDDLQITKILRDYFNYENFEV--FVAHDGQKGLEKINNLEIDIIILDLMLPKKNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R ++ H+++P+I +S        +   + G DD V KP   +E++ RV  + +R+  
Sbjct: 64  DICRQLKPHNKIPIIILSAKNRENDRIKGLELGADDYVTKPFSPKELVLRVKNVLKRINN 123

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N      + +  + R  +V+ E   L  +E  +L  L ++     ++ ++   ++ 
Sbjct: 124 DQDQNELSFPDLIINKEQRLVKVKKEEIALAPKEFDLLWQLASSPKTVFSREKLLELVWD 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD       V++HI  +R KL  ++G + V +   +GY  
Sbjct: 184 -FDYFGGIRTVDTHIKSIRNKLGAEVG-NYVQTVWGIGYKF 222


>gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 239

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 13/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++          G  +      +    +    + D+  ++  L    E  ++
Sbjct: 5   LVVDDEPSLQTLLTYNLKKSGFDVVSAVDGKQALDIIHEQKIDIVLLDIMLPE--ESGVD 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    +P+I ++        +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 63  VTRELRAEKNQIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVLRRFSQ 122

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                +          G + +  D    +  GE+  L  +E  +L Y+    G+ +++  
Sbjct: 123 KTQTEKEQSVKHSQSYGRLTIDFDKMVVQFDGEIVKLTPKEYELLAYMAEREGRVLSRET 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G      +  +V+ H+S LR K+  +      + + R  GY  D
Sbjct: 183 ILDGVWGYEFSGPDTRMVDMHLSHLRDKIELDPKHPVYLKTVRGFGYRFD 232


>gi|229159731|ref|ZP_04287740.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623756|gb|EEK80573.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 225

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCVVSGEEAISHIENQNFTFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD + KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDEAKHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|119962132|ref|YP_946602.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119948991|gb|ABM07902.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 246

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G S+           L    R DV  ++  L   G   +E
Sbjct: 25  LVVDDEPSLAELMSMGLRMAGWSVAVAGDGPGAVKLAKDFRPDVLVLDVMLP--GFDGVE 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   IR    +VP + ++   ++Q  +    +G DD V KP    E+L R+  + +R  V
Sbjct: 83  VLNRIRTFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSGV 142

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G + +  D R+    GE   L   +  +L YLM N  + V+K QI   ++
Sbjct: 143 AAMDTAELVVGDLTLNVDTREVTRGGEDISLTATQFELLRYLMENPKRVVSKAQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+        + + R  GY I
Sbjct: 203 D-YDFGGQANIVELYISYLRKKIEANH-PPMIHTIRGAGYVI 242


>gi|228983771|ref|ZP_04143968.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775966|gb|EEM24335.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 9   LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPE--MDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|227536221|ref|ZP_03966270.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300772180|ref|ZP_07082050.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|227243924|gb|EEI93939.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300760483|gb|EFK57309.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 225

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 105/225 (46%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + D  +    ++G +++   S E    +      DV  ++  L   G   +
Sbjct: 3   ILLVEDDARISDFIVKGLEENGFNVQLCVSAEEAREVVFEHSFDVIIMDVMLP--GIDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L ++IR      P++ +S     +  +   DSG DD + KP H +E+++R+ A+ RR K
Sbjct: 61  QLTKMIRYKKNLTPILMLSALNEAEDKIAALDSGADDFLVKPFHFKELISRINALTRRTK 120

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +N      +++  D       GE   L  +E ++L YL  N  K V++T + +
Sbjct: 121 YQKQEVLSNSLVIQNLKIDRDKYAVYQDGEKIELSPKEFKLLLYLAENTDKVVSRTMVLN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A++G+ +     NVV+ +IS LR K+        + + +  GY  
Sbjct: 181 AVWGI-NFDNNTNVVDVYISYLRNKIDES-KHQFILTVKGTGYMF 223


>gi|152986242|ref|YP_001347715.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150961400|gb|ABR83425.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 228

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +     E L      D+  ++  L   G    
Sbjct: 5   LLIVEDEPRIGQYLRQGLAESGYAVDLSDDGNEGEQLALGGDYDLLILDVMLP--GRDGW 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R +R A   VP++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 63  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGN 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   + +    R  + QG+   L  +E  +LE L+   G+ + K+ I S ++
Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 183 DM-NFDSDTNVIEVAIRRLRAKVDDDFPQRLIHTVRGMGYVLE 224


>gi|329922499|ref|ZP_08278103.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
 gi|328942137|gb|EGG38417.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
          Length = 235

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++D    +   +   ++   + +    L  +   D+  ++  L        
Sbjct: 4   ILVIDDEAAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDC--SGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L + I     VP+I +S    +   +   + G +D + KP  +RE+LAR+  I RR   
Sbjct: 62  DLCKEITGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +V + R     +    + R     G    L  +E +ILE L+    K   + 
Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILETLLKRPDKIFTRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++    +G +D   +   V+  I +LRKKL +       V +    GY +
Sbjct: 182 ELLQIGWG-YDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230


>gi|229492138|ref|ZP_04385947.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
 gi|229320926|gb|EEN86738.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
          Length = 234

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 104/224 (46%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V +         G   +   +++    L S  ++  +A+   +   G   +
Sbjct: 10  ILIVDDDAKVLNSLERGLRLSGF--DTATAVDGRSALSSVNKQCPAALVLDVNMPGLDGV 67

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA  ++VP+  +S   S+   +   ++G DD + KP    E++AR+ A+ RR  
Sbjct: 68  GVVTALRAIGNEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTT 127

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    ++    GP+ V   G    + G    L +RE  +L  L  + G  +++ Q+   
Sbjct: 128 RATPSVDHPITVGPLTVDLRGHRAHIDGRRIELTKREFDLLSVLAEHAGVVLSRAQLLRL 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D A + NVV+  ++ LRKKL        + + R +G+ +
Sbjct: 188 VWG-YDFAADTNVVDVFVTYLRKKLEVDGAPRVIHTVRGVGFVL 230


>gi|325263303|ref|ZP_08130038.1| DNA-binding response regulator RegX3 [Clostridium sp. D5]
 gi|324031696|gb|EGB92976.1| DNA-binding response regulator RegX3 [Clostridium sp. D5]
          Length = 243

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +G    F  DG      + +     +      D   ++  L        
Sbjct: 24  LLIVEDDVDLGEGIGFAFSADGYVTRLASCIREGRRMLDDGGVDCVILDCNLPD--GNGF 81

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           E  R IRA S VP++ ++   +    +   + GVDD + KP     + ARV  +  RR  
Sbjct: 82  EFCREIRAGSDVPILMLTARDTELDEVKALELGVDDFMTKPFSVAVLKARVKRLVLRRNG 141

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    ++  IRV         +GE   L + E ++L + + NR + ++K QI   ++  
Sbjct: 142 GT--VIQSNGIRVDVKECRVFREGEEVVLSKVEYKLLLFFLENRNQVLSKEQILENVWDS 199

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
               V+EN V  +I +LR K+         + +   LGY
Sbjct: 200 AGRFVDENTVSVNIRRLRAKVEEHPDSPCCIKTVHGLGY 238


>gi|297531093|ref|YP_003672368.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297254345|gb|ADI27791.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 225

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  I +  D+   ++G    +   +L      D   ++  L   G    
Sbjct: 3   LLVVEDHHDLREAMIEMLADE-FEVDGACDGDEGLFLAQQNIYDAIILDVMLP--GIDGF 59

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  SIVRRLREDGIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQSPELKARLRALLRRSG 119

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +   V G+   L  ++  +LEYL+ N+G  + K QIF  I+
Sbjct: 120 ALTTKQTIRYRGIELFGKEKGVVVDGQPLKLTSKQYELLEYLVHNQGVILTKEQIFDRIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD     ++VE  + +LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTISIVEVFVHQLRKKLEPFGYHADIQTVRGIGYML 220


>gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676]
          Length = 224

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEV--LAAADGREALERWNEGPDVLILDVMLPDT--DG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 120 KKTEAAVSHEVIEAGEIVICPKKRKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 180 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 224


>gi|218659866|ref|ZP_03515796.1| two-component response regulator protein [Rhizobium etli IE4771]
          Length = 223

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPE--MDGV 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    R A   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+        V G    L   E R+L YLM + G+ V++T++   +Y 
Sbjct: 121 GHASSEIICGPVRLDIKSSKATVNGTALKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R LGY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGLGYRI 216


>gi|170766034|ref|ZP_02900845.1| transcriptional regulatory protein QseB [Escherichia albertii
           TW07627]
 gi|170125180|gb|EDS94111.1| transcriptional regulatory protein QseB [Escherichia albertii
           TW07627]
          Length = 219

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L        
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILDLTLPR--MDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DILREWRNKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 121 GLASNELRHGNVMLDPGKRIATLAGESLTLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216


>gi|118470690|ref|YP_884659.1| two component response transcriptional regulatory protein prra
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171977|gb|ABK72873.1| two component response transcriptional regulatory protein prra
           [Mycobacterium smegmatis str. MC2 155]
          Length = 246

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+          G  +    S +    L S+   D   ++  +       + 
Sbjct: 24  LMVDDDPDVRTSVARGLRHSGFDVRVAASGKEALRLLSTESHDALVLDVQMPE--LDGVA 81

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA  + +P+  +S   ++   +   ++G DD + KP    E++AR+ A+ RR   
Sbjct: 82  VVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRASH 141

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   ++T   GP+ + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++
Sbjct: 142 TEQPSDTMTVGPVTIDTARRLVFVSGERVDLTKREFDLLAVLAENAGVVLSRQRLLELVW 201

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D  V+ NV +  IS LR+KL        + + R +GY +
Sbjct: 202 G-YDFDVDTNVADVFISYLRRKLERDGVPRVIHTVRGIGYVL 242


>gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 235

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +         +      +    L       +  ++  L        
Sbjct: 6   ILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAEDKNPSLVVLDVMLPD--MDGF 63

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R  H  +P+I +S        +   + G DD + KP +  E+ AR+ ++ RR  
Sbjct: 64  EICARLRERHPDLPIIILSARGQDMDKIMGLEIGADDYIVKPFNPLELAARIRSVLRRTS 123

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + +       E GP  +    +     G +  L  RE +++++ +  R + V + ++  
Sbjct: 124 RNTSPVRPAALELGPYLLEVKTQRLYKSGRLVKLTAREFQLMKFFLQKRNEPVTRDELLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            ++GL +   +   V+ HI +LR+K+ ++      + +    GY  
Sbjct: 184 EVWGL-NYFGDPKTVDVHIRRLREKIEDEPSSPLFLKTVWGYGYCF 228


>gi|170016759|ref|YP_001727678.1| response regulator [Leuconostoc citreum KM20]
 gi|169803616|gb|ACA82234.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +E    L+    L S+   +   I   L+      LE
Sbjct: 5   LIVEDEENLAKFIGLELKHEGYEVE--TVLDGRSGLDSALENNYDVILLDLMLPELNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   + P+I ++   S+   +   D G DD + KP    E+LAR+ ++ RR+ + 
Sbjct: 63  VARRLRESKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAIE 122

Query: 123 NNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              ++          +R+  + R      ++  L +RE  +L  L+ N     ++ Q+  
Sbjct: 123 TESSDKHRAIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            ++G FD  VE NVV+ +I  LR K+ +       + + R  GY +
Sbjct: 183 EVWG-FDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVM 227


>gi|217970504|ref|YP_002355738.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|217980166|ref|YP_002364216.1| heavy metal response regulator [Thauera sp. MZ1T]
 gi|217507831|gb|ACK54842.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|217508337|gb|ACK55122.1| heavy metal response regulator [Thauera sp. MZ1T]
          Length = 228

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       ++   ++  +S     +L      D+  ++  L   G    
Sbjct: 3   ILVVEDELKLAEYLRKALTENSYVVDVAHSGTEGRYLAIEGHYDLVLLDVMLP--GLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R +R    VP++ ++    ++  +    +G DD + KP    E+LARV A+ RR   
Sbjct: 61  AVLRELRRDKHVPVLMLTARDKVEDRVKGLQAGADDYLVKPFALSELLARVQALLRRGAL 120

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   +   + +    R     G+   L  +E  +L  L+   G+ +++T +   
Sbjct: 121 PTPGQDSTVLKLADLELDLVRRKASRSGQRLDLTAKEFTLLTLLLRRHGQVLSRTALAEQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +     NVVE  + +LR KL +      + + R +GY ++
Sbjct: 181 VWDM-NFESNTNVVEVAVRRLRSKLDDPFAKKLLHTVRGMGYVLE 224


>gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +E    L+    L ++   +   I   L+      LE
Sbjct: 5   LIVEDEENLAKFVGLELKHEGYEVE--TVLDGRSGLDAALENNYDVILLDLMLPELNGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R   + P+I ++   S+   +   D G DD + KP    E+LAR+ ++ RR+ + 
Sbjct: 63  VARRLRESKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAIE 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      +R+  + R      ++  L +RE  +L  L+ N     ++ Q+  
Sbjct: 123 TESNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINIVQSREQLLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            ++G FD  VE NVV+ +I  LR K+ +       + + R  GY +
Sbjct: 183 EVWG-FDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVM 227


>gi|116333655|ref|YP_795182.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099002|gb|ABJ64151.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 228

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G              L+++  +D   I   L+      +
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYETNV--QFNGRTGLEAALSQDFDVILLDLMLPELNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LARV A+ RR+ +
Sbjct: 62  EVARRVREVKSTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRIHL 121

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +        +   + +  + R      EV  L +RE  +L  LM N    +A+  + 
Sbjct: 122 EGEQKSTKQTTVKFKDLTIEKENRIVRRGDEVINLTKREYELLLALMENINVVLARDVLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++  VE NVV+ ++  LR K+        + + R  GY +
Sbjct: 182 TKVWG-YESEVETNVVDVYVRYLRNKIDVPGQKSYIQTVRGTGYVM 226


>gi|328954969|ref|YP_004372302.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328455293|gb|AEB06487.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 232

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++G  +    S         S   D++ ++  L        
Sbjct: 5   ILVVDDEKTITDLVGIYLENEGYEVTLCYSGSDAARAIFSQEFDLAVLDIMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IRA    P+I ++   +    ++    G DD V KP    E++ARV A  RR   
Sbjct: 63  ELLRTIRADRTYPVIMLTARDTQIDKIEGLSLGADDYVVKPFRPLELVARVKAQLRRYTS 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              R             + +    R   V  +       E  IL YL  +RG+ V    +
Sbjct: 123 YGTRDSGEESPIISVNGLVINRAARSVTVDEKQVRCTPLEYSILLYLAEHRGRVVPVEDL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F A++     +   N V  HI  LR+K+  +      + +   +GY+I+
Sbjct: 183 FRAVWDEKFLSSSNNTVMVHIRHLREKIGDDAQNPRFIKNIWGVGYTIE 231


>gi|255523659|ref|ZP_05390626.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512714|gb|EET88987.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 228

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  ++                 DV  ++  L   G+   E
Sbjct: 5   LIIEDDNNIAALERDYLQLNGYKVDIEQDGISGLKRALLGVYDVVVVDLMLP--GKDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR   ++P+I +S        +     G DD + KP    E++AR+ +   R +  
Sbjct: 63  IVKAIRDKFEIPIIIVSAKNEDIDKIRGLGFGADDYLTKPFSPAELVARIRSHIMRYERL 122

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + +           + + +D     V G+   L  +E  +L +L +N      K QIFS+
Sbjct: 123 SGKKVTLEIISHKAMEIQTDSHKVFVNGKEIFLTTKEYELLVFLASNPNIVFTKDQIFSS 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           I+G  D   +   V  HI KLRKK+    G  + +++    GY  +
Sbjct: 183 IWGE-DYCGDTATVAVHIQKLRKKIEKDSGNPEYIETIWGTGYRFN 227


>gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family
           [Leptospirillum ferrodiazotrophum]
          Length = 232

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   E  +       L    + D   ++  L   G   L
Sbjct: 5   ILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLP--GIDGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R+I+   A S  P++ ++        +   + G DD + KP H +E++ARV A+ RR
Sbjct: 63  TVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRR 122

Query: 119 LKVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +       R   GP+ +     +   +G   PL  +E  +L  LM   G+ + +  + +
Sbjct: 123 RETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G  D    +  V+ HI +LRKK+        V++ + +GY  
Sbjct: 183 TVWG-DDYEGTDRTVDVHIRRLRKKMGESAA--WVETVKQIGYRF 224


>gi|255659043|ref|ZP_05404452.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
           20544]
 gi|260848481|gb|EEX68488.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
           20544]
          Length = 233

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +E          +    + D+  ++  L   G    
Sbjct: 4   ILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLP--GLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + R +R + +VP++ ++        L     G DD + KP +  E++ARV +   R   
Sbjct: 62  AVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYER 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K   +  ++G + +  D     +  +  P  RRE  +L +L  +     ++  +F
Sbjct: 122 ILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREALF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++G  +   +   V  HI+++R+K+         +++ R  GY  
Sbjct: 182 ERVWGA-EALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227


>gi|197302965|ref|ZP_03168015.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC
           29176]
 gi|197297960|gb|EDY32510.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC
           29176]
          Length = 238

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++G        G  +  + + +  E L+   +E++      ++      + 
Sbjct: 13  LVVEDDKEIREGVKIYLKSQGYEV--YEAADGIEGLKVLEKEEIHLAIVDIMMPRLDGIR 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           +   +R     P+I +S        +   + G DD V KP    E++ARV +  RR +  
Sbjct: 71  MTMKLREKYDFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRRYRKF 130

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N    G + +  D  +  V GE   L   E +IL  L  N G+  +  +I+ 
Sbjct: 131 MERLAPRENIHVIGGLEINEDTVEVSVDGEPVRLTPIEYKILLLLAKNPGRVFSSEEIYE 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   ++A+  + +  H+  +R+K+  +      +     +GY I+
Sbjct: 191 RVWQ--EKAINTDTIMVHVRNIREKIELDPKNPKYLKVVWGVGYKIE 235


>gi|228995903|ref|ZP_04155561.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003520|ref|ZP_04161338.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757758|gb|EEM06985.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763875|gb|EEM12764.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 223

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +    +  D+   ++   + E   +L      DV  ++  L        
Sbjct: 3   LLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVMLPV--IDGF 59

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V GE   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 NLTTKQTINYRGIELFGKDKDIQVDGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYML 220


>gi|229115399|ref|ZP_04244806.1| Two-component response regulator vanR [Bacillus cereus Rock1-3]
 gi|228668013|gb|EEL23448.1| Two-component response regulator vanR [Bacillus cereus Rock1-3]
          Length = 243

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +  ++  F++   EE L+      +      ++      +
Sbjct: 17  ILIVDDDLDIVQFINVNLTQEDFTV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 75  ELCRRIREKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R  ++ G+   + + E  IL  + A + +     +I
Sbjct: 135 FNQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +++         N V  HI++LR K+  N      + +   +GY I
Sbjct: 195 YESVWNERAYESN-NTVMVHIARLRNKIEENPKEPRFIQNVWGVGYKI 241


>gi|254976162|ref|ZP_05272634.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093552|ref|ZP_05323030.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255315295|ref|ZP_05356878.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517963|ref|ZP_05385639.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651079|ref|ZP_05397981.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684144|ref|YP_003215429.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687803|ref|YP_003218937.1| two-component response regulator [Clostridium difficile R20291]
 gi|260210307|emb|CBA64619.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213820|emb|CBE05796.1| two-component response regulator [Clostridium difficile R20291]
          Length = 238

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 93/235 (39%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G ++  F      E L+    +++      ++      +
Sbjct: 6   ILVVEDEKEIADAIEIYLLNQGYNV--FKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            L   +R +   P+I +S        +   + G DD V KP    E+LARV +  RR   
Sbjct: 64  TLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTK 123

Query: 120 ------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                       +  ++    G + +  + ++  + G+       E +IL  LM N G+ 
Sbjct: 124 YLNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNAGRV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +  +I+  ++   + A+  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 184 FSADEIYERVWN--ENAINTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 236


>gi|225018950|ref|ZP_03708142.1| hypothetical protein CLOSTMETH_02901 [Clostridium methylpentosum
           DSM 5476]
 gi|224948294|gb|EEG29503.1| hypothetical protein CLOSTMETH_02901 [Clostridium methylpentosum
           DSM 5476]
          Length = 222

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 95/220 (43%), Gaps = 8/220 (3%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKVLELP 64
           +D   +  G       +G  +  + +      L +     D+  ++  L        ++ 
Sbjct: 2   EDDKTIVMGLAYSLEQEGFEV--YTAGNVSAALTALKQNYDLILLDLTLPD--GTGYDVC 57

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           R ++     P+I ++        +   D G DD + KP   RE+++R+ ++ RR   +VS
Sbjct: 58  RAVKGRGDTPVIFLTACDDEGNVVMGLDMGADDYITKPFRIRELISRIKSVLRRCSKEVS 117

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                +G IRV +         +  PL   E R+L  L+ N G+ +++ Q+   I+ +  
Sbjct: 118 KTVFLSGSIRVNTAQARVTRGEQEIPLTSVEYRLLLTLIHNAGQVLSRAQLLDGIWDVGG 177

Query: 183 EAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           + V +N +  +I +LR KL +       + + R +GY ++
Sbjct: 178 DFVNDNTLTVYIKRLRDKLEDDPAHPSIIRTVRGIGYLVE 217


>gi|92113096|ref|YP_573024.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91796186|gb|ABE58325.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 227

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +           G +     +  E   WL   A   +  ++  L   G   
Sbjct: 5   ILIVEDEPKIARLVADYLQQSGYATHHLAHGDEVMPWLADHA-PALILLDLMLP--GTDG 61

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R I   +  +P+I ++        L   + G DD + KP   RE++ARV A+ RRL
Sbjct: 62  LTLCRRIGDQYPALPVIMLTARVEEVDRLLGLELGADDYICKPFSPREVVARVKAVLRRL 121

Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 A T  P+ +  DG     QG    L   E ++L+ +M   G+  ++ Q+   +Y
Sbjct: 122 HPQTEEAATPAPLSLDEDGWRALAQGTDLGLTAVEFQLLKVMMQAPGRIFSRDQLMDHMY 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219
                 V E  V+SHI KLR+K+ +     D + S   +GY 
Sbjct: 182 -RDHRIVSERTVDSHIKKLRRKIADAYPERDIIHSVYGVGYK 222


>gi|71736484|ref|YP_275217.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557037|gb|AAZ36248.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323718|gb|EFW79802.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320328357|gb|EFW84361.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882464|gb|EGH16613.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889733|gb|EGH22394.1| DNA-binding response regulator [Pseudomonas syringae pv. mori str.
           301020]
 gi|330987871|gb|EGH85974.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010798|gb|EGH90854.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 227

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A+     +    + G+ ++  ++         S   D+  ++  L       L
Sbjct: 4   ILAIEDDAITAKEIVTELSNHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPE--MDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ IS    +   +    +G DD + KP    E+ ARV  + RR  
Sbjct: 62  TIVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSN 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   + +    R+    GE   L   E ++LE+LM N G+ + +  IF  +
Sbjct: 122 PVSAGKTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +      N+++ HI +LRKK+        + + R  GY I
Sbjct: 182 WG-YHFDPGTNLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|28211098|ref|NP_782042.1| transcriptional regulatory component of sensory transduction system
           [Clostridium tetani E88]
 gi|28203538|gb|AAO35979.1| transcriptional regulatory component of sensory transduction system
           [Clostridium tetani E88]
          Length = 230

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 101/226 (44%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D +++          +G +L+  +S++           D+  ++  L        
Sbjct: 4   ILLVEDDSILAYSIEYTLNGEGFNLKCADSIKKARDNFKENSFDLIILDVMLPD--GNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + IR  S+VP+I ++        +   D G DD + KP   +E+++R+ AI RR K 
Sbjct: 62  DFCKEIRKASEVPVIFLTACDEEANVVIGLDIGADDYITKPFRIKELISRIRAILRRSKT 121

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +   +G I+V +     E   +   L   E R+L   + +  + +++  I   ++
Sbjct: 122 FSKDLDLLISGDIKVQTLQGKIEKNDKEIILTALEYRLLLIFINHPKQILSRNIILEELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
               E V++N +  +I +LR+K+ +       + + R LGY   WN
Sbjct: 182 DAEGEFVDDNTLSVYIRRLREKIEDNAGEPKYITTHRGLGYR--WN 225


>gi|307261733|ref|ZP_07543399.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306868551|gb|EFN00362.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 213

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 6/197 (3%)

Query: 29  FNSLEFEEWLQS----SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPS 83
           +  LE E++ ++    S +  +  ++  L G+ G + ++  +     +Q+P++ ++   S
Sbjct: 11  YQVLEAEDYQRAVKKLSEKPKLILLDWMLPGRSGIQFIQYLKKSEETAQIPILMLTARSS 70

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ 143
               +   ++G DD V KP   + ++AR+ A+ RR   +N+      + +  + +    Q
Sbjct: 71  EDDCIVCLNTGADDYVTKPFSPKVLIARIEALLRRTYQNNDIINIDDLILDQNAKRVTFQ 130

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   L   E ++L + M +  K  ++ Q+   ++G  D  VE+  V+S+I +LRK L  
Sbjct: 131 KKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWGN-DIYVEDRTVDSYIRRLRKSLEP 189

Query: 204 KLGFDPVDSKRFLGYSI 220
                 V + R  GY  
Sbjct: 190 CGFERYVQTVRGSGYRF 206


>gi|238920215|ref|YP_002933730.1| DNA-binding transcriptional regulator PhoP [Edwardsiella ictaluri
           93-146]
 gi|238869784|gb|ACR69495.1| transcriptional regulatory protein PhoP [Edwardsiella ictaluri
           93-146]
          Length = 224

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++   + +  ++       D++ ++  L   GE  +
Sbjct: 3   ILVVEDNNLLRHHLSVQIRELGHQVDAAENAKEADFFVREQGPDIAIVDLGLP--GEDGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R  R     +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SMIRRWRSEQITLPILVLTARESWQEKVAALEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P +     R+  V   +  L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIISMPPFQADLSRRELRVNETLIKLTAFEYTIMETLIRNSGKVVSKDALMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKKL+++   D + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQSEYPADVITTVRGQGYRFDV 222


>gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
 gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
          Length = 244

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A ++         +G  +    + + E+ L     ++ S +   ++      L
Sbjct: 26  ILIAEDEAKLRYVVSGYLKSEGYHV--VEAEDGEDALDKFYSDNFSLVLLDIMMPKRDGL 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   IR  S VP+I ++   +    L+ F  G D+ ++KP   + ++ RV +I +R   
Sbjct: 84  EVCAEIRKLSDVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSILKRAGL 143

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++    G +++        V  +   L  RE  +L YL+AN+   + + QI  A++G+
Sbjct: 144 LQDSEFNMGNLKISYREHSVYVDDQRISLTPREYDLLCYLVANKNIVLNREQILQAVWGM 203

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +   V++HI  LR K+      + + + R +GY  +
Sbjct: 204 -DYEGDIRTVDTHIKCLRIKI--PGAQEYIKTIRKIGYKFE 241


>gi|115377140|ref|ZP_01464354.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822862|ref|YP_003955220.1| phosphate regulon transcriptional regulatory protein phob
           [Stigmatella aurantiaca DW4/3-1]
 gi|115365849|gb|EAU64870.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395934|gb|ADO73393.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G S     + E      S     +  ++  L        E
Sbjct: 5   LIVDDERDLAELIDFNLQAAGFSTRVAATGEAALTAASEHPPHLVLLDLMLPD--ISGTE 62

Query: 63  LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           + R +R+++    V ++ ++        +  F+ G DD V KP   RE++ R+ AI RR 
Sbjct: 63  VCRQLRSNALTRDVLVVMLTAKGEEADRVRGFEVGADDYVTKPFSVRELVLRIKAILRRG 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K        GP+ +        V+G+   L   E R+LE++M   G+   + Q+   
Sbjct: 123 TPAKEGAAPLTLGPLTLDVATHRFYVEGKEVLLTALEFRLLEHMMTRLGRVQTREQLLEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++GL    +E   +++H+ +LR KL        +++ R +GY I
Sbjct: 183 VWGLS-SNLETRTIDTHVMRLRDKLGPARAH--LETVRGVGYRI 223


>gi|116251207|ref|YP_767045.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255855|emb|CAK06936.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 248

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ S    DV  I+  L  +    L
Sbjct: 26  ILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRR--DGL 83

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R  +   P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 84  SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 144 TPDQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 204 D-YHFDPQTNVIDVHVSRLRSKIEKDYSQPLLKTIRGAGYMI 244


>gi|121593642|ref|YP_985538.1| two component heavy metal response transcriptional regulator
           [Acidovorax sp. JS42]
 gi|120605722|gb|ABM41462.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax sp. JS42]
          Length = 219

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      L      D+  ++  L        
Sbjct: 3   LLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDV--DGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A  QVP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  +R +   + +    R     G+   L  +E  +LE L    G+ + ++ I S ++
Sbjct: 121 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            + +   + NV++  I +LR K+ +      + + R +GY
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGY 219


>gi|119776435|ref|YP_929175.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768935|gb|ABM01506.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 224

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +         ++  S++     E   +       D + I+  L       +
Sbjct: 3   LLLVEDDAALAANLGDHLRENLYSVDVAADGELGLFQGLEYDYDAAIIDVGLP--KLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L   +RA   + P++ ++   S +  ++  D+G DD + KP H RE+ +R+ A+ RR  
Sbjct: 61  SLVTKLRAEGREFPILILTARDSWEDKVEGLDAGADDYLTKPFHPRELASRLKALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   E GP+ + +   +  + GE   L   E R+L++LM +RG+  +KT +   IY 
Sbjct: 121 GKASPVIENGPVTLNTASGEVLLNGERVSLSASEFRLLQFLMMHRGEVQSKTMLTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  ++ NV+E  I +LRKKL        +++ R  GY ++
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNELGLIETLRGQGYRLN 221


>gi|89894532|ref|YP_518019.1| hypothetical protein DSY1786 [Desulfitobacterium hafniense Y51]
 gi|219668964|ref|YP_002459399.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333980|dbj|BAE83575.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539224|gb|ACL20963.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +        +G ++   FN L+    L+    + V  +   ++      
Sbjct: 3   ILVCDDDKEIVEAIRIYLAHEGYTIHKAFNGLQA---LEVIEEQTVHLVIMDIMMPQMDG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +     IR    +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 60  IRALMKIREERNIPVIMLSAKSEDTDKIMGLNMGADDYITKPFNPLELIARVKSQLRRYV 119

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   N  ++G + +  + +   V GE   L   + +IL+ L AN G+  +  QI+
Sbjct: 120 TLGSLETKTNVYQSGGLMIDDESKCVTVDGEEVKLTPVQYKILKLLTANAGRVFSIDQIY 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++     + E N V  HI K+R+K+  N      +     +GY I+
Sbjct: 180 ENVWNEAAFSAE-NTVAVHIRKIREKIEINPKEPKYLKVVWGIGYKIE 226


>gi|288561577|ref|YP_003428983.1| two component response regulator [Bacillus pseudofirmus OF4]
 gi|288548209|gb|ADC52091.1| two component response regulator [Bacillus pseudofirmus OF4]
          Length = 232

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 99/230 (43%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR----EDVSAIEAFLIGKG 57
            +++DD   ++        D+G  L  F +   +E +          D+  ++  +    
Sbjct: 7   ILIVDDEFQMRTLLSIYLKDEGFDL--FEASTGKEAITKIRNNPDNYDLIILDIMMPD-- 62

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+ +I+R +S +P++ +S   +L+  +D  + G DD + KP    E++ARV A+ R
Sbjct: 63  LDGFEVCKIVREYSTIPILMLSARKALEDRVDGLNLGADDYLTKPFEPEELIARVKALLR 122

Query: 118 RLKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R+     + +         + ++ + R   V  E+  L  +E  +L  L  N  +   + 
Sbjct: 123 RVTTIEAKKDEVKLAFEDGLSIYYENRSVYVNNELVELTAKEFELLYKLALNPQRVYTRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +   I+G  D    +  V+SH+  +R KL    L  + + +   +GY  
Sbjct: 183 DLLYLIWGE-DYVGAQRTVDSHMKNIRSKLYAAGLKNNRIITVWGVGYKF 231


>gi|260777188|ref|ZP_05886082.1| two-component system response regulator QseB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260606854|gb|EEX33128.1| two-component system response regulator QseB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 218

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 103/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  ++ +   A       + +   S E       +    +  ++  L   G   L+
Sbjct: 4   LLVEDDPMLGNAITASLARHHYTADWVTSGESALHALQTDSFLLVILDISLP--GISGLK 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           + + +R+     P++ +S    L   +   + G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VLKELRSKGDKTPVLILSARDELNDRVYGLNHGADDYLVKPFQLEELLARMGALIRRSAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           ++++    G + V  +     V GE   L   E +IL YL+ N G+ ++KTQI   ++G 
Sbjct: 122 MADDTIVVGDVSVSVNSHKVAVAGECINLTPNEFKILLYLVTNAGRVLSKTQILQNMHG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +DE+   N +E HI  LRKK+        +++ R +GY I
Sbjct: 181 WDESAGLNSIEVHIHNLRKKMPKGT----IENIRGVGYII 216


>gi|225572481|ref|ZP_03781345.1| hypothetical protein RUMHYD_00778 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040053|gb|EEG50299.1| hypothetical protein RUMHYD_00778 [Blautia hydrogenotrophica DSM
           10507]
          Length = 295

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +G       +G  +    SL     L    + D   ++  L       +
Sbjct: 69  ILIVEDDRGLAEGIKFYLEKEGYRVVMAGSLGGGRVLYRQEKPDAVLLDLNLPD--GDGM 126

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
              R IR +SQVP++ ++        +   ++G DD + KP     +  R+  +  R + 
Sbjct: 127 SFCREIRKNSQVPILMVTARDMETDEVMGLETGADDYLTKPFSLTVLRTRLRKLLERQQK 186

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V N+  ++G I +           E   L   E R+L   + N  + + K QI + I+
Sbjct: 187 GGVENHILKSGEIFLDESRTSVRKGAESLNLSMTEYRLLRLFLKNPNQVLLKEQILAVIW 246

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
                 V+EN +  +I +LRKK+ +       + +   +GY  +
Sbjct: 247 DSESNFVDENTLAVNIRRLRKKIESDPSNPMYLKTIHGMGYLWE 290


>gi|218133615|ref|ZP_03462419.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990990|gb|EEC56996.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
           43243]
          Length = 228

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 106/224 (47%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +++DD + ++         +   +    +   EE L     + D++ I   ++      
Sbjct: 10  ILVVDDESRMRKLVHDFLARNNYDV--IEAANGEEALDIFYEDKDIALIILDVMMPKMDG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            E+   IR +S+VP+I ++     +  L  F+ GVD+ ++KP   + + ARV AI RR  
Sbjct: 68  WEVCAEIRRNSKVPIIMLTAKGEERDELQGFELGVDEYISKPFSPKILTARVDAIIRRVY 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +    E G I +       ++ G+   L  +E  +LEY + N+G  +++ +I + ++
Sbjct: 128 SKDAGEIIEIGGIEMDKSAHVVKIDGQKIDLSFKEFELLEYFIDNKGIALSREKILNNVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             +D   +   +++H+ KLRKK+  K   + + +   +GY  + 
Sbjct: 188 N-YDYFGDARTIDTHVKKLRKKMGEKG--EYIKTIWGMGYKFEV 228


>gi|49478095|ref|YP_037336.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196037738|ref|ZP_03105048.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|229092209|ref|ZP_04223390.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|49329651|gb|AAT60297.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196031008|gb|EDX69605.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|228691200|gb|EEL44964.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKGNIHLAIVDIMMPFV--DGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 223

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALEKWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+     G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL N    + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLDC 223


>gi|302528854|ref|ZP_07281196.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437749|gb|EFL09565.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 230

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A    +G S+   +        +++   D+  ++  L   G   LE
Sbjct: 9   LVVEDDLTIAASIDARLSAEGFSVTVAHDGPAAVEAEAATSPDLVVLDVMLP--GFDGLE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R I+A   VP++ ++        L     G DD + KP   R + AR+ A+ RR++ S
Sbjct: 67  VCRRIQARRPVPVLMLTARADETDLLVGLGVGADDYLTKPFSMRVLSARIQALLRRVERS 126

Query: 123 N----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +     R   G + +    R     GE   L   E  +L +          + ++ S ++
Sbjct: 127 SAAAEERIVLGDLEIDIAERRVRRGGEPAQLTPIEFDLLVHFARRPRAVQPRERLLSEVW 186

Query: 179 GLF--DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                        V+SHI  LR+KL    G D + +   +GY+++ 
Sbjct: 187 DWDVQATGAGTRAVDSHIKALRRKL----GADLIRTVHGVGYALEV 228


>gi|258654528|ref|YP_003203684.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258557753|gb|ACV80695.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 230

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G  +    +      + + +  D+  ++  L       L
Sbjct: 7   LLVVDDEPSLQDIVATSMRFLGYQVAVAGTGREAVRIATDSHPDLIILDVMLPDF--DGL 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA      ++ +S   +    +    +G DD V KP    E+ ARVAA+ RR+K
Sbjct: 65  EVMKRVRAAGVDSGVVFLSARDTPADKIAGLTAGGDDYVTKPFGLEELAARVAAVLRRVK 124

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +       + +  +       G    L   E ++L +LM N    +++ Q+  A+
Sbjct: 125 PDPADDGTLRVADLELDPETYQVTRAGVPIELAPTEYKLLRHLMVNANVVLSRQQLLDAV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D   +++VV ++IS LR+K+ +  G   + + R  GY +
Sbjct: 185 WGT-DFYGDDSVVATYISYLRRKV-DATGEPLIHTHRGFGYVL 225


>gi|212691246|ref|ZP_03299374.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855]
 gi|237712324|ref|ZP_04542805.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|237726460|ref|ZP_04556941.1| two-component system response regulator [Bacteroides sp. D4]
 gi|265752033|ref|ZP_06087826.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
 gi|212666478|gb|EEB27050.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855]
 gi|229434986|gb|EEO45063.1| two-component system response regulator [Bacteroides dorei
           5_1_36/D4]
 gi|229453645|gb|EEO59366.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|263236825|gb|EEZ22295.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
          Length = 229

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 106/227 (46%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + +       ++G  ++  NS E    ++   + D+  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKME-LTQYDLLLLDVMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + +  +A + +P+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR  
Sbjct: 65  ANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTS 124

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +       + +   + V    +   + G    L ++E  IL  L+ N+G+  ++  I +
Sbjct: 125 PTQGKEVQEQLQYKGLLVDITKKKVSIDGIEISLTKKEFEILLLLLQNKGRVFSREDILA 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++   +  V +  ++ +I++LRKK+        + ++   GY  + 
Sbjct: 185 KVW-QEEVYVLDRTIDVNITRLRKKIGEYG--KCIVTRLGYGYCFEC 228


>gi|288937383|ref|YP_003441442.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|288892092|gb|ADC60410.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
          Length = 227

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  ++  D+  ++  L        
Sbjct: 3   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDV--NGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++RA +  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ + G + V    R          L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIVESQFQAGDLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|225568375|ref|ZP_03777400.1| hypothetical protein CLOHYLEM_04452 [Clostridium hylemonae DSM
           15053]
 gi|225162823|gb|EEG75442.1| hypothetical protein CLOHYLEM_04452 [Clostridium hylemonae DSM
           15053]
          Length = 232

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   + +G        G   +   +    + L  +   D+  ++  L        
Sbjct: 4   IFLVEDDLSLINGLSFALKKQGYETDIARTSLEAQNLWGNEDYDLVILDVSLPD--GSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +IIR  S+VP+I ++        +   D G DD + KP     +L+R+ A+ RR   
Sbjct: 62  ELCKIIRRTSKVPIIFLTAADEETDIIMGLDIGGDDYITKPFKLAILLSRINALLRRSDN 121

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N       +  I+V     +         L   E ++L   M N    ++  QI S ++
Sbjct: 122 FNETTTELNSNGIKVKLLKGEVYKNESQLDLTASEYKLLCLFMENPDIVLSPEQILSKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
              ++ ++ + +  +I +LR K+ +  G    + + R +GY   WN
Sbjct: 182 DCDEKYIDSSTLTVYIRRLRTKIEDTPGQPQKILTVRGMGYK--WN 225


>gi|114763733|ref|ZP_01443127.1| transcriptional regulator, winged helix family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114543734|gb|EAU46747.1| transcriptional regulator, winged helix family protein [Roseovarius
           sp. HTCC2601]
          Length = 222

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++ DG        G S E   +    +   + A E   A+   L+      L
Sbjct: 3   ILIVEDDAVLGDGLSVGLRLSGFSPELVET--CADARHAIAMEGFEAVVLDLMLPDGSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R   S +P++ ++    L   +   D+G DD + KP    E+ AR+ A+ RR +
Sbjct: 61  ELLRELRQSGSDMPVLMLTARDGLDDRVTGLDAGADDYLGKPFELPELSARLRALTRRAQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N      + + +         E     RRE  +L  LM   G  ++K  +   +YG
Sbjct: 121 GRAENLLHWNGLALDTARMSGRRGPEEIAFSRREYTVLAALMERPGSILSKATLEERLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N VE H+  LR KL    G   + + R  GY +
Sbjct: 181 -WQEDIESNTVEVHVHHLRAKL----GSGFIQTVRGAGYRL 216


>gi|53723015|ref|YP_112000.1| metal-related two-component system, response regulator
           [Burkholderia pseudomallei K96243]
 gi|76819077|ref|YP_336261.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|126444564|ref|YP_001063861.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126458151|ref|YP_001076746.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134278523|ref|ZP_01765237.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 305]
 gi|167724960|ref|ZP_02408196.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei DM98]
 gi|167743904|ref|ZP_02416678.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 14]
 gi|167821087|ref|ZP_02452767.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 91]
 gi|167829447|ref|ZP_02460918.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 9]
 gi|167850926|ref|ZP_02476434.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei B7210]
 gi|167899528|ref|ZP_02486929.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 7894]
 gi|167907844|ref|ZP_02495049.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei NCTC 13177]
 gi|167916204|ref|ZP_02503295.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 112]
 gi|167924039|ref|ZP_02511130.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei BCC215]
 gi|217422676|ref|ZP_03454179.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 576]
 gi|226197040|ref|ZP_03792618.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|237510348|ref|ZP_04523063.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|242313953|ref|ZP_04812970.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106b]
 gi|254184632|ref|ZP_04891221.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1655]
 gi|254185852|ref|ZP_04892370.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254193683|ref|ZP_04900115.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei S13]
 gi|254265562|ref|ZP_04956427.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1710a]
 gi|254300907|ref|ZP_04968351.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 406e]
 gi|52213429|emb|CAH39472.1| metal-related two-component system, response regulator
           [Burkholderia pseudomallei K96243]
 gi|76583550|gb|ABA53024.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|126224055|gb|ABN87560.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126231919|gb|ABN95332.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134250307|gb|EBA50387.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 305]
 gi|157811175|gb|EDO88345.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 406e]
 gi|157933538|gb|EDO89208.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169650434|gb|EDS83127.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei S13]
 gi|184215224|gb|EDU12205.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1655]
 gi|217394907|gb|EEC34926.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 576]
 gi|225931023|gb|EEH27032.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|235002553|gb|EEP51977.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|242137192|gb|EES23595.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106b]
 gi|254216564|gb|EET05949.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1710a]
          Length = 230

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 92/220 (41%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D             + G   +             +   D++ ++  L G       
Sbjct: 4   LIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGC--DGWT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   + P++ ++    +   +   + G DD + KP    E+LARV ++ RR + +
Sbjct: 62  VVRELRRTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRRGQAT 121

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +        + +    R    QG    L  +E  +L  LM  +G+ + ++ I S I+ + 
Sbjct: 122 DAPVLRVANLELDLIQRKARRQGNTILLTAKEFLLLWLLMRRQGEILPRSLIASQIWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVV++ I ++R K+        + + R +GY ++
Sbjct: 181 NFDSDSNVVDAAIKRVRAKVDQDYEPKLIHTVRGMGYVLE 220


>gi|163941059|ref|YP_001645943.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863256|gb|ABY44315.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 224

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +       +    +  S   D+  ++  +        
Sbjct: 4   ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPI--MDGW 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 62  TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 121

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S      G + +           E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 122 IGSTQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 182 I-DYAGDDRTVDVHIKRLRERFATTHDF-RIETVRGLGYRLEV 222


>gi|194436317|ref|ZP_03068419.1| DNA-binding response regulator BaeR [Escherichia coli 101-1]
 gi|194425045|gb|EDX41030.1| DNA-binding response regulator BaeR [Escherichia coli 101-1]
 gi|323972772|gb|EGB67971.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
          Length = 240

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|302384799|ref|YP_003820621.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195427|gb|ADL02998.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 237

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 96/233 (41%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++G        G  +  F + +  E L+   RE++      ++      +
Sbjct: 6   ILLVEDDKEIREGIEIYLRSQGYEV--FQAADGVEGLKVLQREEIHLAIVDVMMPRMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD V+KP    E+LARV +  RR K 
Sbjct: 64  TMTVKLREAYDFPVIILSAKSEEVDKIMGLNIGADDYVSKPFTPMELLARVNSQLRRYKK 123

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        +N    G + +  D  +  V  +   L   E +IL  L+ N G+  +
Sbjct: 124 YMDMLEEKEQKEKSNVYSIGGLELNEDTVEVTVDEKPVKLTPIEFKILALLIKNPGRVFS 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             +I+  ++   + A+  + +  H+ K+R+K+  N      +     +GY I+
Sbjct: 184 AEEIYERVWN--ERAINTDTIMVHVRKIREKIEINPKEPKYLKVVWGVGYKIE 234


>gi|167622073|ref|YP_001672367.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352095|gb|ABZ74708.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 225

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +  +  F + G ++E          L +S + D+  ++  L       L
Sbjct: 3   ILMVEDDATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQ--LDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA  SQ P++ +S    +   +    +G DD + KP    E+L R   + +R +
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGE 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +   GP+ +    R   + G+   L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SLPTITDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|255525634|ref|ZP_05392568.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185521|ref|ZP_06853931.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255510724|gb|EET87030.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050355|gb|EFG89779.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 224

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 95/227 (41%), Gaps = 17/227 (7%)

Query: 2   FVLIDDRALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++D   I L   D       N +E  + L+++ + D+  ++  +       
Sbjct: 6   ILVVDDDKDIRDMINIYLVNQDMNVHTAANGIEALDILENT-KVDLIVLDVMMP--KMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++    IR    VP+I +S        +     G DD V KP +  E+LAR+ +  RR K
Sbjct: 63  MKACMKIREKLNVPIIILSAKIDDADKILGLTIGADDYVGKPFNPLELLARIKSQLRRYK 122

Query: 121 VSNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             NN          +   + +     +  ++ +   L   E +IL  L  NRGK  +   
Sbjct: 123 QLNNNFKALQEEVIQIDELSINISTHEVFLKDKQIKLTPYEFKILVLLAQNRGKVFSIAS 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+  ++   D    +  V  HI ++R+K+    G D + +   +GY 
Sbjct: 183 IYENVW-EEDYVASDRTVTVHIRRIREKI----GRDYIKTVWGVGYK 224


>gi|217076252|ref|YP_002333968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thermosipho africanus TCF52B]
 gi|217036105|gb|ACJ74627.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thermosipho africanus TCF52B]
          Length = 222

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  ++   S+        + + D+  ++  L   G  + 
Sbjct: 4   ILIVEDDLSIRNILKKYLKSHGYEVDEAGSIVDFRKKLYNDKFDLVLLDIMLPD-GFSIN 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ELP I      + +I IS   S    +   + G DD V KP + RE++AR+ + +RR+  
Sbjct: 63  ELPDIKVNFPDLGVIIISARDSDNDKIYGLEIGADDYVAKPFNPREVVARIKSYFRRVSK 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N   + GP+ +F +    ++      +  +E  +L  L  N     ++ +I   ++   
Sbjct: 123 NNEYIKYGPLEIFCENYVVKLNNNEVEMTAKEFEVLCLLAKNPDYVFSREKILDTVW--E 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE + + VV+ HIS +R KL    G   + + R  GY  +
Sbjct: 181 DEFISDRVVDVHISNIRNKL----GKSWIKTIRGAGYKFN 216


>gi|56750974|ref|YP_171675.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81299367|ref|YP_399575.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56685933|dbj|BAD79155.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81168248|gb|ABB56588.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 237

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + V+   +      G  +E                 D+  ++  L        
Sbjct: 6   ILVVDDDSAVRTLLVRFLSRQGYQVEAAIDGSSALAQFERFSPDLLILDVNLPDT--NGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L  I++  + V +I ++        L  F  G DD + KP     + AR+AAI RR + 
Sbjct: 64  QLCEIVQKRTGVYVILLTSRDDEADILTGFAKGADDYITKPFSLMSVGARIAAILRRQRH 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S        +++    R+    G+   L   E  +L +L  +  +   + ++   +
Sbjct: 124 IETASQPALHYEQLQIDPARREVSFAGQPILLTALEFDLLHFLATHPDRVWRRNELIQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +  +D   ++ VV+ HI ++RKKL        P+ + R +GY  +
Sbjct: 184 W-EYDYVGDQRVVDVHIGQIRKKLEVNPELACPIQTVRGVGYKFE 227


>gi|315299097|gb|EFU58351.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3]
          Length = 227

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGMRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|283835062|ref|ZP_06354803.1| DNA-binding response regulator CreB [Citrobacter youngae ATCC
           29220]
 gi|291069354|gb|EFE07463.1| DNA-binding response regulator CreB [Citrobacter youngae ATCC
           29220]
          Length = 229

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  + +   +G S+E F               D   ++  L       
Sbjct: 5   LIWLVEDEQGIADTLVYMLQQEGFSVEAFERGLPVLEKARQRCPDAIILDVGLPD--ISG 62

Query: 61  LELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R +   H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+
Sbjct: 63  FELCRRLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122

Query: 120 K---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +      +    G   +          G    L R E  +L+ L+ + G+  ++ Q+   
Sbjct: 123 QKFASPASTTRCGDFELNELAAQITWFGIPLTLTRYEFLLLKTLLMSPGRIYSRQQLMDL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 183 VWADAQDTFD-RTVDTHIKTLRAKLRAINPEISPINTHRGMGYSL 226


>gi|229154353|ref|ZP_04282473.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228629177|gb|EEK85884.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 242

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 21  ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPT--MDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       D + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYR 236


>gi|167761025|ref|ZP_02433152.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704]
 gi|167661404|gb|EDS05534.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704]
          Length = 228

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 86/220 (39%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +      L   +G ++   +S      +    R D++ ++  L        
Sbjct: 4   IFLVEDDKEIAKNLALLLRTEGFNVTHASSQSEAISVLDGNRFDLALVDISLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE+ AR+    R+   
Sbjct: 62  TVCTEIKQAQNIPVIFLTASGDEASVVTGLNMGADDYIIKPFRPRELTARIRTALRKYGH 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    E   + V +     +  G    L   E R+L   + N    + + ++   ++   
Sbjct: 122 SPAAFEMCDLHVDTASGVVKKGGREVFLSALEYRLLLIFINNPNVIITRDRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            E V  N +  +I +LR+K+ N  G    + + R  GY +
Sbjct: 182 GEFVNNNTLTVYIKRLREKIENDPGNPQIILTVRGTGYRL 221


>gi|52142292|ref|YP_084536.1| response regulator [Bacillus cereus E33L]
 gi|51975761|gb|AAU17311.1| response regulator [Bacillus cereus E33L]
          Length = 225

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +  F + + +   +   +E++      ++       
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKV--FEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|227878289|ref|ZP_03996251.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256844179|ref|ZP_05549666.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256850449|ref|ZP_05555876.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|262047895|ref|ZP_06020842.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|312976705|ref|ZP_07788454.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
 gi|227862120|gb|EEJ69677.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256614084|gb|EEU19286.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256712654|gb|EEU27648.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|260571802|gb|EEX28376.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|310896033|gb|EFQ45098.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
          Length = 239

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V          +   +      +    L +  +  +  ++  L       +
Sbjct: 8   ILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPV--YDGM 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R IR  S VP+I ++   S        D G+DD + KP    E+LAR+  + RRL+ 
Sbjct: 66  TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEK 125

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V +   E GP+++     +     E   L  +E  ++  LM +  K  ++ ++ 
Sbjct: 126 MRQQNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKSRDELL 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D   + N V+ +I  +R K+ N      + + R LGY +
Sbjct: 186 DTVWG-YDFVGQTNTVDVYIRTIRNKIGNPY-KKIIKTMRGLGYCL 229


>gi|258611893|ref|ZP_05242924.2| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293596316|ref|ZP_05230458.2| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|293597011|ref|ZP_05266512.2| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300765250|ref|ZP_07075235.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|258606949|gb|EEW19557.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293584711|gb|EFF96743.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293594699|gb|EFG02460.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300514071|gb|EFK41133.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
          Length = 233

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            ++ DD   + D       ++G ++  + + +  E   L    +  +  ++  +      
Sbjct: 7   ILIADDDKEIVDLVKLYLQNEGYTI--YQAYDGAEVWRLVQEKQPTLVILDIMMPE--MN 62

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R++R +    P++ +S        +    +G DD + KP +  E+  RV AI RR
Sbjct: 63  GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 122

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++       VS ++   GPI V        V G+   L   E  IL  L +  G+  +  
Sbjct: 123 MQQMSQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            IF  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 183 YIFEKIWQEK-ALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 232


>gi|302543576|ref|ZP_07295918.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461194|gb|EFL24287.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 246

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 93/240 (38%), Gaps = 24/240 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G  ++                 D+  +E  L   G   L
Sbjct: 7   ILVVDDEPSVREAIGRALRFEGYEVDTAGDGVAALRRIEEEPPDLVLLEVMLP--GLDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA  + VP++ ++   S+   +   D+G DD + KP    E+LARV A+ RR +
Sbjct: 65  AVARRLRASGRTVPIMMVTGRDSVGDRIVGLDNGADDYLVKPYASEELLARVRALLRRGR 124

Query: 121 V--------------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
                                   R     + + +  R     G    L + E  +L+  
Sbjct: 125 TVPAAPPVRAPSPWQAPARPEPGARLAFADMTLDTLTRQVTRSGRALDLTKTEFALLKLF 184

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   + +++  I   ++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 185 LSRPRQVLSRAAILRDVWG-FDFEPSSNTLDVYVMYLRRKTEAGGEPRVVHTVRGVGYVL 243


>gi|229042513|ref|ZP_04190258.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228726866|gb|EEL78078.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 242

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD + KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVLRRTN- 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236


>gi|119470711|ref|ZP_01613379.1| response regulator [Alteromonadales bacterium TW-7]
 gi|119446181|gb|EAW27459.1| response regulator [Alteromonadales bacterium TW-7]
          Length = 219

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  LV  G       +G S+E   +++       S   ++  ++  L        
Sbjct: 3   LLLVEDDHLVAQGLCRSLRQEGYSVEHSATVKHALQCLGSGEIELVILDLGLPD--GDGS 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + I+A  +V P++ ++   S++  +   D G +D + KP    E+ AR+    RR+ 
Sbjct: 61  QILKHIKAQKKVIPVVILTARSSIEDKVQGLDMGAEDYLAKPFEPAELFARLRVASRRVN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  ++  + G + + +      +   +  LPR+E  +L+ L+ N+G+  +K Q+ + +Y 
Sbjct: 121 QAQSSLLQCGEVTMDTSAHSVTLNDGLLSLPRKEYMLLKALLENQGRVQSKQQLENKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E V  N +E HI  LRKK       D + + R +GY +
Sbjct: 180 QWGEEVGSNTIEVHIHHLRKK----FPSDFIKTLRGIGYVV 216


>gi|228990905|ref|ZP_04150869.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM
           12442]
 gi|228768842|gb|EEM17441.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM
           12442]
          Length = 245

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +          +   +    +    E L      D+  +   ++      +
Sbjct: 19  ILIVDDDADIVQLIEVHLRQEEFRV--LRAYTGGEALNILDINDIQLVILDIMMPAMDGI 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR    +P++ +S   +    +    +G DD + KP    E++ARV A  RR   
Sbjct: 77  EVCRRIRERHTIPVMFLSAKATDIDKVIGLSTGADDYITKPFSMMELVARVKAQLRRYTY 136

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V  N+ +   + +    R   +  +   L + E  IL  +  NR +     +I
Sbjct: 137 FNHMPSEVHKNKIKIRGLEIDELSRKVMLYEKAINLTKTEYDILHLMAKNRNRVFTLEEI 196

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           + +I+         N V  H+++LR K+         + +   +GY I+
Sbjct: 197 YESIWRERAHESN-NTVMVHLARLRNKIEENPKKPTVIQNVWGVGYKIE 244


>gi|229199377|ref|ZP_04326042.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228584091|gb|EEK42244.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 224

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+  +   DV  ++  L       
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALEKWSEGPDVLILDVMLPDT--DG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 60  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 119

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+     G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 120 KKKEVTVSHEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL +    + + +   +GY +D 
Sbjct: 180 EKVWG-FEYIGNTRAVDIMVQRLRKKLGSSG--EYIKTIYGVGYKLDC 224


>gi|254471766|ref|ZP_05085167.1| two-component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211958968|gb|EEA94167.1| two-component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 223

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +I+D     D  +    + G S +  ++ E    L  S   DV  ++  L  +    L +
Sbjct: 2   IIEDDREAADYLLKALKEAGHSPDHADNGEDGLELAISNTWDVLVVDRMLPKR--DGLSI 59

Query: 64  PRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
              +RA     P++ +S    +   +    +G DD + KP    E+LARV  + RR    
Sbjct: 60  IETLRASGDETPVLILSALSQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLSRRKAGP 119

Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + +   + +          G+   L  RE R+LEYLM + G+ V +T +   ++  
Sbjct: 120 QVETKLQVSDLVLDRLAHSVTRAGQEIVLQPREFRLLEYLMKHAGQVVTRTMLLENVWD- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    + NV++ HIS+LR K+     F  + + R  GYSI
Sbjct: 179 YHFDPQTNVIDVHISRLRSKIDKGFDFPLLHTVRGAGYSI 218


>gi|28211768|ref|NP_782712.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28204210|gb|AAO36649.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 261

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++G+ +    + +  E L     E+V  I   ++      ++
Sbjct: 10  LVVDDEDEIRDAIGIYLKNEGIKV--LKAKDGIEALMVLEEEEVHLIIMDIMMPRMDGIK 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR   ++P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 68  ATFKIRESKKIPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYIRF 127

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + N      + +  D +   V G+   L   E +IL+ LM N+G+  +   I+ +
Sbjct: 128 GNYKENKNAIVVRGLTLNKDAKTAMVDGKEVSLTLTEYKILKLLMENKGRVFSIEHIYES 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++       E N V  HI ++R+K+  N    + +     +GY I+
Sbjct: 188 VWQEPFYNGE-NTVAVHIRRIREKIEINPREPEYLKVVWGIGYKIE 232


>gi|89892848|ref|YP_516335.1| hypothetical protein DSY0102 [Desulfitobacterium hafniense Y51]
 gi|89332296|dbj|BAE81891.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 256

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L   +G ++         +   ++    V      ++  G+   
Sbjct: 32  ILVVDDDPEIREIIHILLQREGFAV---QVAADADTALATLTPGVDLAILDIMMPGKSGF 88

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL   IR  + +P++ ++         + F  G DD + KP    E+++RV A+ RR   
Sbjct: 89  ELCSEIRKTTTIPILFLTAKNQDADKAEGFSCGGDDYLVKPFSSIELISRVKALLRRYLI 148

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S      G + +  D       GE   L   E ++   L+ NR K  +  +I+
Sbjct: 149 YQKQEPASKKEVRLGDLYIDLDTGTVARSGEKIALTSMEYQVFRLLLLNRRKVFSAKEIY 208

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+      +  N +  HI  LR+KL   +G    + +    GY I+
Sbjct: 209 EHIWQEPFLPLSNNTIMVHIKNLRRKLEKDVGRPQYIRTVWGKGYYIE 256


>gi|115352751|ref|YP_774590.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282739|gb|ABI88256.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 282

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 43  ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLP--KMSGL 100

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 101 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 160

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 161 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 220

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 221 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRISTVRGLGYCLE 259


>gi|251791731|ref|YP_003006452.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247540352|gb|ACT08973.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 223

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+ DG  A     G +++ F          +SA  D   ++  L       L
Sbjct: 3   ILVIEDDRLIGDGIKAGLIKLGFNVDWFTQGREGMNALTSAPYDAVLLDLSLPE--IDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           ++ R  R H   VP++ ++   +L+  +     G DD + KP    E+ AR+ A+  RR 
Sbjct: 61  DILRQWRQHGYDVPVLVVTARDALEQRVQGLQQGADDYLCKPFELAEVAARLQALIRRRY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R     G    L  RE  +LE  + N    + + Q+   +Y 
Sbjct: 121 GQLQPVLRHGAVTLDLGSRQVTHNGVSLALKSRELALLELFLMNPTHILTRNQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE HI  LR+KL N      + +   +GY++
Sbjct: 180 SWDDEVSSNAVEVHIHHLRRKLGNHF----IRTVHGVGYTL 216


>gi|238755145|ref|ZP_04616491.1| Transcriptional regulatory protein basR/pmrA [Yersinia ruckeri ATCC
           29473]
 gi|238706592|gb|EEP98963.1| Transcriptional regulatory protein basR/pmrA [Yersinia ruckeri ATCC
           29473]
          Length = 220

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++ G       +G + +   +      L  +++  +  ++  L  +     
Sbjct: 3   LLIVEDDDLLQKGVALALTREGYACDCAGTAAEANSLIITSQYSMVILDLGLPDQ--DGA 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  R  S  +P++ ++   +L+  +D  D+G DD + KP    E+LARV A+ RR +
Sbjct: 61  TLLRQWRRQSISLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N  +   + +    +   ++ +   +  +E  IL  L+   G  V +  +   +Y 
Sbjct: 121 GQSDNFLQQDDLSLNLSTQQVYLRQQPLEITPKEFAILSRLIMRAGHTVNRELLQQDLYT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+    N +E H+  LR+KL    G + + + R +GY ++
Sbjct: 181 WQDDLG-SNTLEVHVHNLRRKL----GKERIRTVRGIGYRLE 217


>gi|229589618|ref|YP_002871737.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361484|emb|CAY48360.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 222

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A     G +++         +   S   D+  ++  L   G   L
Sbjct: 3   LLLVEDNVPLADELLAGLQRQGYAVDWLADGRDAVYQGRSEPYDLIILDLGLP--GLPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+    RA +  +P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLAQWRAAALAIPVLILTARDSWAERIEGLKAGADDYLAKPFHPEELYLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   +   + +    +     G    L   E R+L Y M +  + ++K+ +   +Y
Sbjct: 121 GQTNQPTLQAAGLHLDEGRQCVLRDGAEIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              +   + NV+E H++ LR+KL    G   ++++R  GY    N
Sbjct: 181 DG-ETERDSNVLEVHVNHLRRKL----GRSVIETRRGQGYRFGAN 220


>gi|326441956|ref|ZP_08216690.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 235

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +                + D   ++  L       L 
Sbjct: 12  LVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEAREFQPDAVVLDVALPD--MDGLT 69

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L  R+ R   +VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 70  LLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 129

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++     +    G + +  D R+    G+   L   E  +L YLM N  + ++K QI   
Sbjct: 130 ASAARGESLLAVGDLTLDEDSREVSRGGQAIHLTATEFELLRYLMRNPRRVLSKAQILDR 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE ++S LRKK+ +      + ++R  GY I
Sbjct: 190 VW-SYDFGGQANVVELYVSYLRKKI-DAGRAPMIHTRRGAGYLI 231


>gi|320528447|ref|ZP_08029609.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320131361|gb|EFW23929.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 227

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++  I     +G   E   + +  E ++   + +   +   ++       
Sbjct: 4   ILIVDDEAKIRELIIKYAKHEGF--ETAEAADGMEAVELCEKNNYDLVVMDIMMPHLDGF 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + I+    Q+P I +S        +  FD GVDD V KP   +E++ R+ AI +R+ 
Sbjct: 62  SAVKEIKKTKPQLPFILLSALGEEYDRIHGFDVGVDDYVVKPFSSKELMMRIHAILKRVH 121

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               VS+ + +   + +    R   ++G+   L  +E  +L YL+ N G  + + Q+   
Sbjct: 122 PVEAVSSEQFQIDGMVIDYSARTVTIEGQRIQLSPKEYELLVYLVKNMGIALTREQLLQN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  +++HI  LRK L +      + + R +GY  +
Sbjct: 182 VWG-YDFFGDDRTLDTHIKLLRKNLGDY--AKYIITLRGVGYRFE 223


>gi|302342499|ref|YP_003807028.1| two component transcriptional regulator, winged helix family
           [Desulfarculus baarsii DSM 2075]
 gi|301639112|gb|ADK84434.1| two component transcriptional regulator, winged helix family
           [Desulfarculus baarsii DSM 2075]
          Length = 227

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 97/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G ++    +      L    +  +  ++  L   G +  
Sbjct: 6   ILVVEDEQDIIDLVEFNLRQAGFNVIKATNGLDGLRLAKEKKPALLVLDLMLP--GLEGQ 63

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++       +P++ ++   S    +  F+ G DD + KP   RE++ RV AI RR
Sbjct: 64  EVCRRLKQGDDTRRIPVLMLTALASETDRIVGFELGADDYLAKPFSPRELVLRVRAILRR 123

Query: 119 LKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +        + +  D  +  +  E+  L   E ++L +L+AN G+   + Q+  
Sbjct: 124 QTGPEEQSAPLRKDALVIHPDRFEVRIDDEMVALTATEFKLLHHLVANAGRVQTRQQLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++G ++       V++H+ +LRKK+      D +++ R +GY 
Sbjct: 184 HVWG-YEYDGYARTVDTHVRRLRKKIGPL--SDDIETIRGIGYR 224


>gi|87125177|ref|ZP_01081023.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
 gi|86166946|gb|EAQ68207.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
          Length = 248

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G ++   +              D+  ++  +        
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVITASDGNEALECFRVNEPDLVVLDVMMP--KLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVDK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   +R+ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQVAGIPNSGLIQVADLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 189 KDVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|118580643|ref|YP_901893.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118503353|gb|ABK99835.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 222

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   +           G       N L+   W       D+  ++  L   G   L
Sbjct: 6   LIVEDEEKLSSLLHDYLSQSGFETHRLRNGLDVVPW-VRERNPDLILLDLMLP--GRDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR+ S VP+I  +        L   + G DD + KP   RE++ARV A+ RR   
Sbjct: 63  EICKEIRSFSSVPIIMTTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRTDG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   + +        +      L   E ++L++L AN G+  ++ Q+   IY   
Sbjct: 123 G-TTIKASGLTLDELRLRAVLNDRDLELTAVEFKLLQFLAANPGRIYSRQQLMDRIY-PD 180

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  V +  ++SHI KLR+K+       + + S   +GY  +
Sbjct: 181 ERIVSDRTIDSHIKKLRRKIAVATPDEELIHSVYGVGYKFE 221


>gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 247

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G  +                + D   ++  L        E
Sbjct: 24  LVVDDEPTLTDLLSMALRYEGWQVRTAGDGMGAIRAARQFQPDAVVLDVMLPD--LDGFE 81

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R   + VP++ ++   +++  +     G DD V KP    E++AR+ A+ RR   
Sbjct: 82  VLRKLREDDATVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 141

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     +     G + +  +  +    G++  L   E  +L YLM N  + ++K QI   
Sbjct: 142 AVTARQDAVLTVGDLTLNEESHEVRRSGQLITLTATEFELLRYLMRNPRRVLSKAQILDR 201

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE +IS LRKK+ +      + + R  GY +
Sbjct: 202 VWN-YDFGGQANVVELYISYLRKKI-DAGRQPMIHTLRGAGYLL 243


>gi|262369588|ref|ZP_06062916.1| two-component system response regulator protein [Acinetobacter
           johnsonii SH046]
 gi|262315656|gb|EEY96695.1| two-component system response regulator protein [Acinetobacter
           johnsonii SH046]
          Length = 220

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D A   +        DG S++     +           D   ++  L    G+ +
Sbjct: 3   ILLAEDDASQAESIKTWLEMDGYSVDWVERGDHAILAIEQHHYDCVLLDRGLPHATGDDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   ++   +   P+I ++   S++  ++  D G +D + KP    E+ AR+    R+ +
Sbjct: 63  L--LKVRGKNLSTPVIFLTARDSIRDRVEGLDLGANDYLVKPFSLEELSARIRLQLRQQQ 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S+++      I++    +     G+   L  +E +IL  LM      V + Q+  ++Y 
Sbjct: 121 HSSSQVLSYANIQLDPQAKSVTQNGQAVNLTAKEFQILHKLMLKPEYVVTREQLEESLYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             DE +E N +E  I +LRKKL    G   + + R LGY ++ +
Sbjct: 181 WGDE-IESNAIEVFIYQLRKKL----GSHCIKTIRGLGYRMNQD 219


>gi|239930282|ref|ZP_04687235.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 256

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +      +         R D   ++  L       L 
Sbjct: 34  LVVDDEQSITELLSMALRYEGWQIHSEGDGQGALRAARELRPDAVVLDMMLPD--MDGLS 91

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   S++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 92  VLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSGA 151

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R       G + +  D  +    GE   L   E  +L +LM N  + ++K QI   +
Sbjct: 152 ADRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDRV 211

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     NVVE +IS LRKK+ +      + ++R  GY I
Sbjct: 212 W-SYDFGGHANVVELYISYLRKKI-DAGREPMIHTRRGAGYMI 252


>gi|229056343|ref|ZP_04195761.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228721011|gb|EEL72553.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 8   LLVVEDNASLIESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPE--MDGF 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 125 SLTTKQTICYKGIELFGKDKDAQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225


>gi|170738500|ref|YP_001767155.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168192774|gb|ACA14721.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 220

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ DG  A     G +++   +    +   ++++     ++  L       L
Sbjct: 3   ILVVEDDPILSDGLRAGLALSGAAVDCVATCADADAALTASQFGAVILDLMLPD--GSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +R      P++ ++   ++   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRGLRGRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G IR+        V G    + RRE  +L  LM       +K ++   +YG
Sbjct: 121 GRAAAGLEHGGIRLDPGSLTVTVDGAPVTVSRREFMVLAALMERPSVLRSKAELEERLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E VE N VE H+  LR K+    G   +++ R LGY +
Sbjct: 181 -WQEEVESNAVEVHVHNLRTKI----GKHAIETVRGLGYRM 216


>gi|288942284|ref|YP_003444524.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288897656|gb|ADC63492.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 233

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  ++               R D+  ++  L   G+  L
Sbjct: 9   ILIVEDEERLARLVADYLRAAGHRVQHLAEGTGVAAWVRRERPDLILLDLMLP--GKDGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++ R IR  SQVP+I  +        L   + G DD V KP   RE++ARV A+ RR L 
Sbjct: 67  DICREIRTESQVPIIMTTARVEEIDRLLGLELGADDYVCKPYSPRELVARVKAVLRRTLA 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                A+ GP+ +  D        +   L   E  +LE L    G+  ++ ++   IY  
Sbjct: 127 PEPPAADPGPLHLHRDELRVRAGDDEIELTAVEFALLETLHGAPGRIFSRDRLMDRIY-R 185

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
               V +  ++SH+ KLR+KL       + + S   +GY  +
Sbjct: 186 DHRVVSDRTIDSHVKKLRRKLAELVPDQELIHSVYGVGYRYE 227


>gi|228989703|ref|ZP_04149685.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228770037|gb|EEM18619.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 223

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +    +  D+   ++   + E   +L      DV  ++  L        
Sbjct: 3   LLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVMLPV--IDGF 59

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 60  EVIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V GE   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 120 NLTTKQTINYRGIELFGKDKDIQVGGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYML 220


>gi|326201109|ref|ZP_08190981.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988677|gb|EGD49501.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 226

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++          G ++   ++      +    +E +S +   ++       
Sbjct: 6   ILIADDEERMRRLVADFLKKQGYAVIEADNGMKALQIIIEQKETISLVILDVMMPIMDGW 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R IR +S+VP+I ++   +    L  F  G D+ + KP     +LARV A+ +RL +
Sbjct: 66  EALRSIRQYSKVPVIMLTAKCTEADELLSFGIGADEYITKPFSLMILLARVQALLKRLNI 125

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N +     + +        V G+   L  +E  +L YL  N G  +++ +I ++++  
Sbjct: 126 NINGKKSFDGLEIDLPAHTVHVSGQEIELTPKEFELLLYLCDNDGIALSREKILNSVWD- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +    +   V++HI KLR KL  K   D + + R LGY  + 
Sbjct: 185 YGYFGDVRTVDTHIKKLRLKLGEKG--DFIQTIRGLGYKFEV 224


>gi|228940323|ref|ZP_04102894.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973239|ref|ZP_04133828.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786435|gb|EEM34425.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819449|gb|EEM65503.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326940961|gb|AEA16857.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 225

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFQVFEAEDGKVAQDVLEKENIHLAIVDIMMPFV--DGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|228937889|ref|ZP_04100517.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228977345|ref|ZP_04137740.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782322|gb|EEM30505.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228821795|gb|EEM67795.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938368|gb|AEA14264.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 225

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +    NS E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV----DSKRFLGYS 219
           +   E+  V+SHI  LR KLR      P+     +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKA--HFPIDHHLKTVYGVGYR 219


>gi|212710908|ref|ZP_03319036.1| hypothetical protein PROVALCAL_01976 [Providencia alcalifaciens DSM
           30120]
 gi|212686605|gb|EEB46133.1| hypothetical protein PROVALCAL_01976 [Providencia alcalifaciens DSM
           30120]
          Length = 237

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G         +           D+  ++  L   G   + 
Sbjct: 17  LIVEDEPKLGQLLFDYLQASGYVPALLMRGDEVIPYVQKHFPDLILLDLMLP--GLDGIS 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        L   + G DD V KP   RE++ARV  I RR + S
Sbjct: 75  VCRELRQFSDVPVIMVTAKTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRRCQHS 134

Query: 123 NNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  A      + +  +        ++  L   E R+L++L  N G   ++ Q+   +Y  
Sbjct: 135 STSANHHGTQLIIDENAFQVRYGDKLLELTPAEFRLLKFLSDNAGTVFSRDQLLDILYDD 194

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
               V +  ++SH+  LR+KL +       + S   LGY  D
Sbjct: 195 H-RVVTDRTIDSHVKNLRRKLESLDNEKTFIRSIYGLGYRWD 235


>gi|15964775|ref|NP_385128.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307309662|ref|ZP_07589314.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307319459|ref|ZP_07598886.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15073953|emb|CAC45594.1| Probable response regulator [Sinorhizobium meliloti 1021]
 gi|306894831|gb|EFN25590.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899874|gb|EFN30497.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 233

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D           F + G+  +  +  E   ++ S    DV  ++  L  +    L
Sbjct: 7   ILIVEDDLEAAAYLAKAFREAGIVCDHASDGESGLFMASENAYDVLVVDRMLPRR--DGL 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R      P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 65  SLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +         QG+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 125 APEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 185 D-YHFDPQTNVIDVHVSRLRSKIEKDFDPPLLRTIRGAGYMI 225


>gi|260221887|emb|CBA30899.1| Transcriptional regulatory protein tctD [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 224

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 112/225 (49%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG +      G +++   S  E +  L ++   D+  ++  L       
Sbjct: 3   ILIAEDDQVLADGLLRALRSAGAAVDHVASGTEADAALMTNTEFDLLILDLGLP--KMHG 60

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +RA  S +P++ ++   S+   +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  LEVLKKLRARGSSLPVLILTAADSVDERVKGLDYGADDYMAKPFSLQELEARVRALIRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI- 177
           +  +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGATSSSIKHGPLTYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 178 -YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +G   E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 EWG---EEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220


>gi|255326451|ref|ZP_05367533.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC
           25296]
 gi|255296491|gb|EET75826.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC
           25296]
          Length = 247

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++K+         G  ++          +    R DV  ++  +   G   LE
Sbjct: 26  LVVDDEEMLKELVSMGLKMIGWEVQSAGDGPSALAIARDWRPDVLVLDIMMP--GFDGLE 83

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IR  + +VP + ++   S+   ++   +G DD V KP    E++ R+  + +R  V
Sbjct: 84  LLSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSGV 143

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G + +  D R+    GE   L   +  +L YLM N  + V+K+QI   ++
Sbjct: 144 AAIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDNVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+   +G +P + + R  GY +
Sbjct: 204 N-YDFGGQANIVELYISYLRKKID--VGREPMIHTVRGAGYVL 243


>gi|238783257|ref|ZP_04627282.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia bercovieri ATCC 43970]
 gi|238715850|gb|EEQ07837.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia bercovieri ATCC 43970]
          Length = 251

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   +     +L      D   ++  L   G    
Sbjct: 28  LLLVEDEEKTSSYINRALSELGFTVDVAANGTDGLYLALEYDYDTIVLDVMLP--GMDGY 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + + +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 86  SVLQGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPS 145

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     + +    R     G    L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 146 DGADVTQLHIDDLHLDLLARRVTRGGARLELTAKEFALLSLLARHQGEILSKMMIAEQVW 205

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 206 DM-NFDSDANVVEVAIKRLRAKMDAPYPVKLLHTVRGMGYVLE 247


>gi|229134252|ref|ZP_04263067.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228649182|gb|EEL05202.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 233

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +       +    +  S   D+  ++  +        
Sbjct: 13  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPI--MDGW 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 71  TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 130

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S      G + +           E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 131 IGSTQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 191 I-DYAGDDRTVDVHIKRLRERFATTHDF-RIETVRGLGYRLEV 231


>gi|154498433|ref|ZP_02036811.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
           29799]
 gi|150272501|gb|EDM99686.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
           29799]
          Length = 228

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 14/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE---DVSAIEAFLIGKGEK 59
           ++++D + ++   +      G   E   +   EE L    R     V+ ++  L      
Sbjct: 5   LVLEDESNIRSFVVINLKRAGY--EAIEAETGEEALAQLRRNPDIKVALLDIMLPD--MD 60

Query: 60  VLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             E+ R IRA  SQ+ +I ++        +    +G DD V KP    E+ AR+ A+YRR
Sbjct: 61  GFEVCRRIRASDSQIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARIDALYRR 120

Query: 119 L----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K S+      P  + +  +  E  G+   L   E  I++  M   G+ +++ +I 
Sbjct: 121 TGGAEKESSGEISQPPFLLNTRNQTLEKNGQRVKLTPVEYSIVKLFMEKPGQALSREEIL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
             ++G  D   E  +V+ +I +LR K+ +       + +    GY 
Sbjct: 181 DTVWGR-DYFGELKIVDVNIRRLRIKIEDDPQNPAYITTVWGYGYK 225


>gi|228943430|ref|ZP_04105874.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228976315|ref|ZP_04136786.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783419|gb|EEM31527.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816210|gb|EEM62391.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 233

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++       +DG +       +    +  S   D+  ++  +        
Sbjct: 13  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISKNIDLVVLDIMMPI--MDGW 70

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A+  +PL+ ++        +  F+ G DD + KP    E+  RV A+ +R K
Sbjct: 71  TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 130

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + S      G + +           E   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 131 IGSTQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D A ++  V+ HI +LR++      F  +++ R LGY ++ 
Sbjct: 191 I-DYAGDDRTVDVHIKRLRERFATTPDF-RIETVRGLGYRLEV 231


>gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 235

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++         G  +           +  + + D+  ++  +   G     
Sbjct: 11  LVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRTFKPDILVLDVMMP--GMDGFG 68

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +RA     P + +S   S++  ++    G DD V KP    E++AR+A + RR   
Sbjct: 69  LLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRRSGF 128

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R     + +  +  +    GE+  L   E  +L Y M N G  ++K +I   
Sbjct: 129 GVGDEEPTRIVFSDLELDDETHEVFKNGELVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 189 VW-SYDFGGDVNVVESYVSYLRRKV-DTGPKRLIHTLRGVGYVM 230


>gi|300853968|ref|YP_003778952.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434083|gb|ADK13850.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 236

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +   +S   +E L+     + + +   ++       
Sbjct: 5   LMIVEDDEAIANILKEHLEKEGYEVNWASS--GKEGLEDFKTYEFALVMIDIMLPEMDGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + IR  +  +P++ IS   +    +     G DD + KP    E+ AR+ A  RR K
Sbjct: 63  TLCKNIRWINEDIPVVIISAKQTEMDKVKGLKLGADDYITKPFSLIEVSARIEAHLRRYK 122

Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +  +    I        +  + +   V  +   +  +E  +L  +  N  K  +K ++
Sbjct: 123 KVDRESAVNGILKFKNGLIIIPEEKKVTVNEKEIQMTIKEFELLSLMAQNPNKVFSKEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +  I+   D     N V  HI +LR+K+ +       + +   +GY  
Sbjct: 183 YHHIWESMDVEGN-NTVTVHIKELREKIGDSSKNPTFIKTVWGVGYKF 229


>gi|228914595|ref|ZP_04078204.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844914|gb|EEM89956.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 232

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEGALQILCEHTVDVALLDVMLP--GMDGF 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 65  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|227821360|ref|YP_002825330.1| putative two-component response regulator transcriptional
           regulatory protein [Sinorhizobium fredii NGR234]
 gi|227340359|gb|ACP24577.1| putative two-component response regulator transcriptional
           regulatory protein [Sinorhizobium fredii NGR234]
          Length = 233

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D           F + G+  +  +  E   ++ S    D   ++  L  +    L
Sbjct: 7   ILIVEDDLEAAAYLAKAFREAGIVSDHASDGESGLFMASENAYDALVVDRMLPRR--DGL 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R      P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 65  SLISELRRRGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G + +         QG+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 125 TPDQDMVYRVGDLELDRLAHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 185 D-YHFDPQTNVIDVHVSRLRSKIEKDFEPPLLRTVRGAGYMI 225


>gi|52841523|ref|YP_095322.1| DNA-binding response regulator [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628634|gb|AAU27375.1| DNA-binding response regulator [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 225

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 9/214 (4%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
            D   A     G  ++     E       S   ++  ++  L       L L + IR   
Sbjct: 13  GDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLP--KLSGLSLLQNIRHDG 70

Query: 72  Q-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETG 129
              P+I ++   S++  +   DSG DD   KP    E+ AR+ A+ RR +  +++  +  
Sbjct: 71  NSTPVIILTARESIEDRVKGLDSGADDYHIKPFDLNELSARIRALVRRSQGRADSVLQYK 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            I +        V   +  +PRRE  +L+ L+ N G+ +++ Q+  +IYG ++E V+ N 
Sbjct: 131 NITLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG-WEEDVDSNA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +E HI  LRKKL      + + + R +GY  + N
Sbjct: 190 LEVHIHNLRKKL----NANFIRTIRGVGYMAEKN 219


>gi|16762974|ref|NP_458591.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29144461|ref|NP_807803.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213420191|ref|ZP_03353257.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213427225|ref|ZP_03359975.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581684|ref|ZP_03363510.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609432|ref|ZP_03369258.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213650815|ref|ZP_03380868.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213854794|ref|ZP_03383034.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828852|ref|ZP_06546595.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25300973|pir||AD1022 two-component response regulator pmrA [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505281|emb|CAD09277.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140099|gb|AAO71663.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56540681|gb|AAV92794.1| PmrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 222

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G ++    E    S    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRISGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +          G+   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR    +K+G   + + R  GY +
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKSRIRTVRRFGYML 216


>gi|332284350|ref|YP_004416261.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
 gi|330428303|gb|AEC19637.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
          Length = 227

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      L  +   D+  ++  L        
Sbjct: 3   LLVVEDEIKTGDYVRQGLIESGFVVDLTRTGLDGHHLALTGSYDLIILDVMLPDV--DGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A S  P++ ++   S++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVQALRDAKSSTPVLFLTARDSVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + +    R  + Q     L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 APAFQDQLQVADLVLDIPRRRAQRQNVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV++  I +LR K+ +      + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDYEPKLIHTVRGMGYMLDV 223


>gi|313905592|ref|ZP_07838954.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469539|gb|EFR64879.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 227

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   +++  +      G  + GF        +    + ++  ++  L   GE  
Sbjct: 1   MIYCVEDDDSIRELMVYTLRASGFEVRGFQDASAFWNIMKEKKPELVLLDIMLP--GEDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           + + + +RA      +P+I  +   S   T+   DSG DD ++KP    E+++R+ A+ R
Sbjct: 59  ISILKKLRASPVTEDIPVIMATAKDSEYDTVIGLDSGADDYLSKPFGMMEMVSRIKAVLR 118

Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   K      + G I V        V      L  +E  +L+ L+ N G+   +  + +
Sbjct: 119 RSTPKKKQKLIQCGRIVVDEGKHTVTVNDRRVFLTLKEYELLKLLVENSGQVFTRDILLA 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +++G  D   E   V+ HI  LR KL      + + + R +GY ++
Sbjct: 179 SVWGA-DFVGETRTVDVHIGTLRTKLDECG--NMIKTVRGVGYKLE 221


>gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LAAADGREALEKWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKTDAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 223


>gi|293400081|ref|ZP_06644227.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306481|gb|EFE47724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 229

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++    L  ++G  +   ++    E +     +D+  ++  +   G    +
Sbjct: 6   LIVDDNKEIREVVNVLLSNEGYIVNEADN--GAEAITKCEAQDLIILDIMMP--GMDGFK 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
             R IR  + VP++ ++     Q   D F+SG DD + KP  + E+L+RV A+ RR  V 
Sbjct: 62  TCRRIRELTNVPILFLTSKTLDQDKEDGFNSGGDDYLIKPFSYSELLSRVNALIRRFYVY 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +N  E   ++V  +     V  E   L   E RIL+ L+ N  +  +  +++
Sbjct: 122 RGKSNIEESNIIERNDLKVDQNSNRVWVGDEEVNLTEIEYRILQLLITNPKRVFSNKELY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +I+         N +  HI  LRKKL  +      + +    GY  D
Sbjct: 182 ESIWDESYLYTANNTIMVHIRNLRKKLLVDPSNPKYIRTIWGKGYRFD 229


>gi|153010000|ref|YP_001371215.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561888|gb|ABS15386.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 230

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +           G  ++     E   +L  +   D   ++  L    G  V
Sbjct: 3   ILIVEDDKDLNRQLSEAMAAAGYVVDRAYDGEEGHYLGDTEPYDAVVLDIGLPRMDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +E  R  R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 63  VE--RWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+ + +      V G    L   E R+L YLM +  + V++T++   +Y 
Sbjct: 121 GHASSELVCGPLYLDTKTSKASVNGVALKLTSHEYRLLSYLMHHMDEVVSRTELIEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R +GY I
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGMGYRI 216


>gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   +         +D   +  F +   EE L+      D+  ++  +   G+  
Sbjct: 5   ILVVDDEEDIISFLRDSLEEDDYEV--FTASSGEEALEKIKLYPDLILLDIMMP--GKNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR     P+I ++     +  +    SG DD + KP   R++ AR+ A  RR K
Sbjct: 61  YEVCNDIRDIVSCPIIFLTAKGEERDIVKGLASGGDDYIQKPFSLRQLKARIHAHLRREK 120

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + N +E        I +    R+    G++  L ++E  I+E+L  N G+  +K QI+ 
Sbjct: 121 RNTNNSEKANLYFKNISINLRNREVYCNGQLVILTKKEFDIIEFLSVNCGQVFSKEQIYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            ++G +D   +   V  H+ K+R K++N     + + +   +GY  +
Sbjct: 181 KVWG-YDAEGDSASVAEHVKKIRHKIQNFDPEEEYISTVWGVGYKWE 226


>gi|298345536|ref|YP_003718223.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|298235597|gb|ADI66729.1| response regulator [Mobiluncus curtisii ATCC 43063]
          Length = 227

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +              +  + +      +   +   L+  G   +
Sbjct: 5   ILVVDDDQALSEMIGIILESSAYEPSF--CADGAKAVDKFREVEPDLLLLDLMLPGMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        +   ++G DD + KP   +E+LARVAA  R L  
Sbjct: 63  EICRRIREFSNVPIIMLTAKSDTTDVVAGLEAGADDYIPKPFKPKELLARVAARLRNLDA 122

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  +  +   + +     +    G+   L   E  +L  L    G+  ++ ++   ++GL
Sbjct: 123 AEHDVLKAAGVEINLASHEVSRGGKPLNLTPLEYDLLVALATKPGRVFSREELLEQVWGL 182

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              A +  +V  H+ +LR K+  +      V + R +GY I
Sbjct: 183 R-HASDTRLVNVHVQRLRAKVELDPDNPTVVLTVRGVGYRI 222


>gi|295704202|ref|YP_003597277.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801861|gb|ADF38927.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 224

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++       + G  +      E         R D++ ++  +  K     
Sbjct: 4   ILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFK--DGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I+ +  +P++ ++        L  FD G DD V KP   +E++ARV A+ RR +V
Sbjct: 62  ELTKEIKEYFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYRV 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +NN    G I++     +         LP +E  +L  L+++ GK   + Q+   I+G 
Sbjct: 122 EANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           +D   EE  V+ HI +LR++L + K     + + R LGY 
Sbjct: 181 YDYEGEERTVDVHIKRLRERLNHMKNVGMEIKTIRGLGYR 220


>gi|220919230|ref|YP_002494534.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957084|gb|ACL67468.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 230

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +           G       + E           D+  ++  L        E
Sbjct: 5   LLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDV--SGTE 62

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R I++  +   VP++ ++        +  F+ G DD V KP   RE++ R+ A+ RR 
Sbjct: 63  VCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRA 122

Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       GPIRV  +     V G    L   E ++L  LM+  G+  ++ Q+   
Sbjct: 123 GARPSERPPESVGPIRVDVESHRVYVDGAEVVLTPLEFKLLTTLMSRLGRVQSRDQLLED 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +  E VE   V++H+ +LR+KL +  G D +++ R +GY +
Sbjct: 183 VWEMSAE-VETRTVDTHVKRLREKLGS--GRDLLETVRGIGYRL 223


>gi|153955231|ref|YP_001395996.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855657|ref|YP_002472779.1| hypothetical protein CKR_2314 [Clostridium kluyveri NBRC 12016]
 gi|146348089|gb|EDK34625.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569381|dbj|BAH07365.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 228

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 87/220 (39%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    + L   +G ++    +        +  + D++ I+  L        
Sbjct: 4   IFLVEDDKAIARNLVLLLRSEGFTVTHAPTRSDAFTALAGNKFDLALIDISLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEIKEMQDLPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELMARIRTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    E   + V       +  G    L   E R+L   + N    V ++++   ++   
Sbjct: 122 SPRAFEICGVHVDMASGVVKKNGSEVFLSALEYRLLLVFINNPKSIVTRSRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+  N      + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRL 221


>gi|30018835|ref|NP_830466.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296501409|ref|YP_003663109.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29894377|gb|AAP07667.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296322461|gb|ADH05389.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|330821252|ref|YP_004350114.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
 gi|327373247|gb|AEA64602.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
          Length = 266

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 97/236 (41%), Gaps = 17/236 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG +               +    +  ++  L G+G   L
Sbjct: 10  ILIVEDEPKLSALLADYLHADGYATAIVADGREVVPHVRAHAPSLVLLDLMLPGRG--GL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S +P+I ++        L   + G DD V KP   RE++ARV AI RR++ 
Sbjct: 68  DICRELRGFSTIPVIILTARVDEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRIEQ 127

Query: 122 SNNRAE-------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +  + +               P  +  +     + G    L   E R+L  L+AN G+  
Sbjct: 128 AERKGKGEAGHEANAADGGAAPFEIDPEHHVARLDGRNLHLTPVELRLLALLVANPGRIY 187

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           ++  +   +Y      V +  V+SH+  LR+KL+  +   D + S   +GY  + +
Sbjct: 188 SRDFLLRRLYDDH-RVVTDRTVDSHVKNLRRKLQAVRPERDFIRSIYGVGYQFELD 242


>gi|295694966|ref|YP_003588204.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295410568|gb|ADG05060.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 234

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   ++D   +     G   L+     E  + LQ      V          GE  
Sbjct: 8   ILIVEDEQKLRDVVASYLKKAGYHPLQAARGDEAWDLLQREPVALVVLDLLLPDTPGE-- 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + IRAH+ VP++ ++        +     G DD V KP   RE++AR+ AI RR+ 
Sbjct: 66  -ELCKKIRAHTSVPILMLTAKAGETDRIRGLSLGADDYVTKPFSPRELVARIQAILRRVS 124

Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                A+T     G + + +  ++   +G + PL   E R+L  L  +  + + +  +  
Sbjct: 125 PEELLADTVTFRNGELVIDAGRQEVYRKGVLVPLTPFEYRLLLTLARHPDRPLTREDLIL 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + G FD   +   ++ HI  LR+K+  N      + +   +GY  
Sbjct: 185 KL-GGFDYEGDVRTIDQHIKNLRQKIEPNPKNPSYILTVFGVGYKF 229


>gi|229148989|ref|ZP_04277234.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634529|gb|EEK91113.1| Two-component response regulator [Bacillus cereus m1550]
          Length = 242

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236


>gi|15597853|ref|NP_251347.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107102178|ref|ZP_01366096.1| hypothetical protein PaerPA_01003228 [Pseudomonas aeruginosa PACS2]
 gi|116050644|ref|YP_790537.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218891181|ref|YP_002440047.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254235639|ref|ZP_04928962.1| hypothetical protein PACG_01571 [Pseudomonas aeruginosa C3719]
 gi|254241086|ref|ZP_04934408.1| hypothetical protein PA2G_01771 [Pseudomonas aeruginosa 2192]
 gi|296388882|ref|ZP_06878357.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313107697|ref|ZP_07793879.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9948727|gb|AAG06045.1|AE004694_8 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115585865|gb|ABJ11880.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167570|gb|EAZ53081.1| hypothetical protein PACG_01571 [Pseudomonas aeruginosa C3719]
 gi|126194464|gb|EAZ58527.1| hypothetical protein PA2G_01771 [Pseudomonas aeruginosa 2192]
 gi|218771406|emb|CAW27173.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310880381|gb|EFQ38975.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 223

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A     G +++            +S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLP--GRPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R      P++ ++   S    +D   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EILQEWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + ++ E   +R+    +   + G    L   E R+L Y M + G+ ++K  +   +Y
Sbjct: 121 GLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              +   + NV+E H++ LR+KL    G + ++++R  GY 
Sbjct: 181 DG-ETERDSNVIEVHVNHLRRKL----GREVIETRRGQGYR 216


>gi|290893701|ref|ZP_06556682.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556774|gb|EFD90307.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|307571948|emb|CAR85127.1| DNA-binding two-component response regulator [Listeria
           monocytogenes L99]
          Length = 237

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            ++ DD   + D       ++G ++  + + +  E   L    +  +  ++  +      
Sbjct: 11  ILIADDDKEIVDLVKLYLQNEGYTI--YQAYDGAEVWRLVQEKQPTLVILDIMMPE--MN 66

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R++R +    P++ +S        +    +G DD + KP +  E+  RV AI RR
Sbjct: 67  GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 126

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++       VS ++   GPI V        V G+   L   E  IL  L +  G+  +  
Sbjct: 127 MQQMSQAEPVSQDKVIIGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSE 186

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            IF  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 187 YIFEKIWQEK-ALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 236


>gi|264678635|ref|YP_003278542.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|299529727|ref|ZP_07043163.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
 gi|262209148|gb|ACY33246.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|298722283|gb|EFI63204.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
          Length = 227

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G   +   +      L       +  ++  L   G    
Sbjct: 3   ILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVMLP--GLNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R     +P++ ++    ++  +   + G DD + KP    E+LARV  I RR  
Sbjct: 61  QVLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGH 120

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +N         + +    R     G+   L  +E  +LE LM   G+ + ++ I S ++
Sbjct: 121 PANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  + +LR K+        + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRAKIDEGHSIKLIQTVRGMGYVLDV 223


>gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 234

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +   +            + +   ++  L       +
Sbjct: 8   ILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPE--MDGM 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P+I ++        +   + G DD + KP   RE++AR+ A+ RR +
Sbjct: 66  TVLKQLRQDKVSTPIILVTAKGDELDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQ 125

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           VS +             + +    +    +  V  L  RE  +L Y     G+ + +  I
Sbjct: 126 VSTDTYKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
            +A++G ++   E  +V+ HIS LR K+ +      +  + R  GY++
Sbjct: 186 LTAVWG-YEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGYTM 232


>gi|241203812|ref|YP_002974908.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857702|gb|ACS55369.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 248

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ S    DV  I+  L  +    L
Sbjct: 26  ILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRR--DGL 83

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R  +   P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 84  SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 144 TPDQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 204 D-YHFDPQTNVIDVHVSRLRSKIEKDYSQPLLKTIRGAGYMI 244


>gi|325840792|ref|ZP_08167156.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1]
 gi|325490162|gb|EGC92499.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1]
          Length = 228

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  LV D   A    +   +  F +    E L    +E +  +   L+    K  
Sbjct: 3   ILLIEDEVLVLDALKAYLEREQYRV--FVATTGNEGLTIFEKEKIDLVILDLMLPDMKGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IRA S V L  ++   SL+  +   + G DD + KP   RE++AR+  + RR+  
Sbjct: 61  EICQQIRAISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRING 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N  + G + +    R  +VQ E+ P    E  +L  LM N+GK + + Q+ + I 
Sbjct: 121 PLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQIL 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G FD    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 181 G-FDFNGYDRTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGYKF 222


>gi|323187842|gb|EFZ73139.1| transcriptional regulatory protein baeR [Escherichia coli RN587/1]
          Length = 240

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL         + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWEAD 235


>gi|168186231|ref|ZP_02620866.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169295719|gb|EDS77852.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 226

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 100/219 (45%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G       +G ++   ++  +EE  +  ++  V  +   +    +   
Sbjct: 4   ILIVEDDKLLNKGVKFALEIEGYTI--VDTYNYEEGYKVFSKNKVDLVLLDINLPDKSGS 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   IR +S++P+I I+   +    +D F  G DD ++KP     +  R+ A+ RR  V
Sbjct: 62  KLCIEIRKNSEIPIIFITAKDTESDIIDGFKLGCDDYISKPFSIEVLKQRIKAVLRRTTV 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             NR      I +  +  D +  G    L  +E R+LE L+ N G+ + +  I   ++  
Sbjct: 122 VENRLFVYEDITIDFNKMDVKKNGITIKLTAKEYRLLELLVKNSGQVLTRRTILEKLWDT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
               V+EN +  +I +LRKK+ +       + +   +GY
Sbjct: 182 DGNFVDENALNVNIRRLRKKIEDDSKNPKYIITVFSIGY 220


>gi|163867922|ref|YP_001609126.1| two-component response regulator [Bartonella tribocorum CIP 105476]
 gi|161017573|emb|CAK01131.1| two-component response regulator [Bartonella tribocorum CIP 105476]
          Length = 228

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S++     +    L ++   DV  ++  L+ +    L
Sbjct: 3   ILVIEDDRETGRYLEKAFLEVGHSIDVAYDGDTGYALATTENYDVMVVDRMLLHR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SIITELRAKGNETPVLILSALGQVNDRVTGLRAGADDYLTKPYAFSELLARVEVLQRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +        + +       +       L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVSNLELDRLAHTVKRGDRNILLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLHTVRGAGYML 221


>gi|168216104|ref|ZP_02641729.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182381612|gb|EDT79091.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 226

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPE--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR  S+VP+I ++   ++   +   D+G DD + KP    E+LAR+    ++   
Sbjct: 62  EVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + +  +   +
Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYDDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G ++   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 182 CG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223


>gi|326943053|gb|AEA18949.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LAAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKTENAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 223


>gi|293376525|ref|ZP_06622753.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325845461|ref|ZP_08168752.1| response regulator ArlR [Turicibacter sp. HGF1]
 gi|292644751|gb|EFF62833.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325488480|gb|EGC90898.1| response regulator ArlR [Turicibacter sp. HGF1]
          Length = 226

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   + +    +   +   ++ F+  +       +   D+  ++  L    G  +
Sbjct: 3   ILVVEDEIRLAEAISQILKTNKYDVDVFHDGQSGLDYALTGIYDLIILDIMLPKLNGFDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L++ R      + P++ ++    +   +   D G DD + KP    E+LAR+  + RR  
Sbjct: 63  LKMCRQ--DKIKTPILFLTAKDEIADKVRGLDLGADDYLTKPFATEELLARIRVLLRRQG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++ +        +     +     +   L  +E  IL YL +N  + V K  +   ++G
Sbjct: 121 EITTDTLRFHDAELNLSTYELSCGVKSVKLGLKEFNILNYLFSNGNQIVTKELLIEKVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            FD  VE N VE +IS LRKKL        + + R +GY +  N
Sbjct: 181 -FDADVEYNNVEVYISFLRKKLSFIKSNVIIRTVRGVGYCLGVN 223


>gi|228961520|ref|ZP_04123130.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798138|gb|EEM45141.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 224

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEV--LAAADGREALERWNEGPDVLILDVMLPDT--DG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 120 KKTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 180 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 224


>gi|170733982|ref|YP_001765929.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|254247342|ref|ZP_04940663.1| Two-component response regulator yvrH [Burkholderia cenocepacia
           PC184]
 gi|124872118|gb|EAY63834.1| Two-component response regulator yvrH [Burkholderia cenocepacia
           PC184]
 gi|169817224|gb|ACA91807.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 224

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     +    L +   E    +   L       +
Sbjct: 7   ILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAA--LTALGGETYDLLLLDLGLPKRDGI 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +R     +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 65  DVLRTLRGRGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 125 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 185 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 220


>gi|162421230|ref|YP_001606897.1| DNA-binding heavy metal response regulator [Yersinia pestis Angola]
 gi|162354045|gb|ABX87993.1| DNA-binding heavy metal response regulator [Yersinia pestis Angola]
          Length = 230

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   +     +L      D   ++  L   G    
Sbjct: 3   LLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLP--GMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  SVLEGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPR 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  ++     + +    R     GE   L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDTPYPVKLLHTVRGMGYVLE 222


>gi|47569833|ref|ZP_00240502.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47553479|gb|EAL11861.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 229

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 62  QVCKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHDEKANAITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi
           103S]
 gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi
           103S]
          Length = 224

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +E   +         + R D   ++  +   G     
Sbjct: 2   LIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMP--GMDGFG 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 60  MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGH 119

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S++    R     + +  D R+    GE   L   E  +L Y M N G  ++K +I   +
Sbjct: 120 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 180 WN-YDFGGEVGVVESYVSYLRRKI-DTTEPRLIHTLRGVGYVM 220


>gi|296104894|ref|YP_003615040.1| DNA-binding transcriptional regulator BasR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059353|gb|ADF64091.1| DNA-binding transcriptional regulator BasR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 220

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G      ++G +L+   +    + L  S    +  ++  L  K    L
Sbjct: 3   LLIVEDDLLLQEGLALALSNEGYALDCAATAAEADALIQSGEYSLVILDLGLPDKDGATL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L +  R     P++ ++   +++  ++  DSG DD + KP    E+ ARV A+ RR + 
Sbjct: 63  -LSQWRRRGVDNPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N    G I +    +    Q     +  +E  +L  L+   G+ V +  +   IY  
Sbjct: 122 HSDNLLTDGDITLNLQTQQVLCQSLPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYSW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D+    N +E HI  LR+KL    G D + + R +GY ++
Sbjct: 182 QDDPG-SNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLE 217


>gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 237

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G      N+         S   D   ++  L       L
Sbjct: 4   ILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPD--LNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+K+
Sbjct: 62  EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAK 170
                          +   + + +  R      G+   L +RE  +L  L+ N+   V +
Sbjct: 122 EKDASKNKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 182 DQLLNKIWGP-ESNIETNVVEVYVRYLRNKIDIPGQPSYIKTVRGTGYMV 230


>gi|114562310|ref|YP_749823.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114333603|gb|ABI70985.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 227

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        D   +++  +  E   +     + DV+ I+  L       L
Sbjct: 3   LLLVEDDLALQANIKQHLIDAQYTVDVASDGEEGLFQAQEYQYDVAIIDVGLP--KLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L   +R      P+I ++   S Q  +   D+G DD ++KP    E++AR+ A+ RR  
Sbjct: 61  SLISKLREQDISYPIIILTARDSWQDKVVGLDAGADDYLSKPFQLEELVARINALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + GP  + +   + +   ++  L   E ++ EYLM + G   +K+ +   IY 
Sbjct: 121 GKASPVIQNGPFSINTRSLEIKKSLQIINLSGSEYKLFEYLMLHPGSVHSKSSLIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +LRKKL     +  +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRL 220


>gi|289679223|ref|ZP_06500113.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 222

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A  G  G +++            +S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLP--GMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R+     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLQHWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   E+  + +    +     G    L   E R+L Y M + G+ ++K+ +   +Y
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +E  + NV+E H++ LR+KL    G   V+++R  GY
Sbjct: 181 DGENE-RDSNVIEVHVNHLRRKL----GRAVVETRRGQGY 215


>gi|53728807|ref|ZP_00348249.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208723|ref|YP_001053948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae L20]
 gi|126097515|gb|ABN74343.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 213

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 93/197 (47%), Gaps = 6/197 (3%)

Query: 29  FNSLEFEEWLQS----SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPS 83
           +  LE E++  +    S +  +  ++  L G+ G + ++  +     +Q+P++ ++   S
Sbjct: 11  YQVLEAEDYQSAVKKLSEKPKLILLDWMLPGRSGIQFIQYLKKSEETAQIPILMLTARSS 70

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ 143
               +   ++G DD V KP   + ++AR+ ++ RR   +N+      + +  + +    Q
Sbjct: 71  EDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDDLILDQNAKRVTFQ 130

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   L   E ++L + MA+  K  ++ Q+   ++G  D  VE+  V+S+I +LRK L  
Sbjct: 131 KKEISLSSTEYKLLHFFMAHPEKVYSREQLLDFVWGN-DIYVEDRTVDSYIRRLRKSLEP 189

Query: 204 KLGFDPVDSKRFLGYSI 220
                 V + R  GY  
Sbjct: 190 CGFERYVQTVRGSGYRF 206


>gi|300853701|ref|YP_003778685.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433816|gb|ADK13583.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 84/228 (36%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +   +                + D+  ++  L        
Sbjct: 5   ILIIEDDLSIAELIRDYLELENFEVVICTDGIEGLNNFKENKFDLLILDIMLPQ--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   I+    +P++ +S        +     G DD + KP    E++ARV +  +    
Sbjct: 63  SILHSIQEEKDIPVLLVSAKKEEIDKIKGLTLGADDYITKPFSPSELVARVKSHIKNYEK 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K   N      + +  D R   V G    L ++E  IL +L  N  +  +K  +
Sbjct: 123 IKGKFVKPPKNNIIIRGLEINQDCRQVFVNGREVNLAQKEFEILSFLAQNPNRVFSKEDL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           F  I+GL D   + + V  HI ++R+K+  +      +++    GY +
Sbjct: 183 FEKIWGL-DAIGDTSTVTVHIGRIREKIESSPSNPQYIETVWGAGYRL 229


>gi|301054747|ref|YP_003792958.1| putative response regulator [Bacillus anthracis CI]
 gi|300376916|gb|ADK05820.1| predicted response regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 223

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +  F + + +   +   +E++      ++       
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGFKV--FEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 122 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|254507033|ref|ZP_05119171.1| DNA-binding response regulator [Vibrio parahaemolyticus 16]
 gi|219550028|gb|EED27015.1| DNA-binding response regulator [Vibrio parahaemolyticus 16]
          Length = 219

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +     +G + E   S +  + L  +  ED  AI   L       L
Sbjct: 3   ILVVEDEPRLGEQIVEALEQNGWTPE--LSTDGIDALYRATSEDWEAIVLDLGLPKLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P+I +S   +L   ++  ++G DD   KP    E++AR+ A  RR  
Sbjct: 61  TVLKSIRDENINTPIIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M +  K +++T++   IY 
Sbjct: 121 GNASPVIQNGNLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHHPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+  K     + + R LGY ++
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKIAPK----VIKTVRGLGYQLN 217


>gi|315290879|gb|EFU50248.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
          Length = 239

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D+G  +           L      D   ++  L       L
Sbjct: 7   ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNV--NGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ +P+I IS   S    +   + G DD + KP    E++AR+ A++RR +
Sbjct: 65  EICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 124

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +        + +    R+  +  +   L  RE  +  +   + G+  ++  +
Sbjct: 125 AMGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLRLWFARHPGEVFSRLSL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|297563468|ref|YP_003682442.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847916|gb|ADH69936.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 221

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +    + +  + L  +   DV  +   L   G    
Sbjct: 3   ILVVEDEEGIVSFVRRGLETAGYQV--LTAADGIDGLTMALSSDVDLVVLDLGLPGIPGE 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA    VP+I ++   ++   +   D+G DD + KP    E+LARV A  R   
Sbjct: 61  EVLRRLRARRPSVPVIVLTAKDAVSDRVANLDAGADDYMVKPFSVSELLARVRARLRGGG 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   V+G    L  RE  +LE L+ +  +  ++ Q+   ++G
Sbjct: 121 QERGDVLAAGGVVLDLGARTASVEGRTVNLSAREFALLEVLIRHPTQVFSRPQLLDRVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVVE ++S+LR+KL    G + + + R  GY +
Sbjct: 181 -YDFDGASNVVEVYVSQLRRKL----GSERIQTVRGAGYRL 216


>gi|187934770|ref|YP_001885970.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722923|gb|ACD24144.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 237

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +   +G +   + +   +E L    R     +   ++       
Sbjct: 5   ILIVDDEIEILKLLETVLKKEGFN-NVYTAKTLKEGLAEFNRVKPELVILDIMLPDGDGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR+ S VP++ +S        +  F  G DD + KP   +E+  RV A  RR+  
Sbjct: 64  EICKDIRSKSNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVNY 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          + GP  +     +    G++  L  +E +IL  L  N+ + ++K 
Sbjct: 124 NNENLNENNTEEKIIKFGPYVLNESRAELIKNGKIIELTAKELKILSLLAHNQNQIISKE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +++  ++G  D    +N +  HI KLR+K+ +       + + R LGY +
Sbjct: 184 KLWDKVWGE-DYFGFDNTIMVHIRKLREKIEDDSSNPKYILTVRGLGYKL 232


>gi|326324767|dbj|BAJ84573.1| TCS response regulator CovR-like protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  +D   I   L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVTV--EVNGREGLETALEKDFDLILLDLKLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR   
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + ++     + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|229065319|ref|ZP_04200598.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|228715969|gb|EEL67706.1| Two-component response regulator vanRB [Bacillus cereus AH603]
          Length = 221

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           ++E  +         +    D+  ++  +        
Sbjct: 6   ILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVMMPN--LNGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ ++IR+ S VP+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   
Sbjct: 64  EVAKMIRSQSNVPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSND 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  +N      +RV  D     V      L  +E  IL+ L+ N  K + +  I   ++G
Sbjct: 124 KSLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNERKVLLRESIVEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E  ++++HI  +RKKL        + + + +GY ID
Sbjct: 184 -YDYIGESRIIDTHIKNIRKKLD----IPYIKTIKGIGYKID 220


>gi|297202432|ref|ZP_06919829.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197710046|gb|EDY54080.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 219

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 11/222 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G +++  +         +    D+  ++  L   G     +
Sbjct: 2   IVEDERRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVILDIMLP--GLNGYRV 59

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
              +RA   +VP++ ++         +  D+G DD + KP  +  ++AR+ A+ RR    
Sbjct: 60  CAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGNG 119

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   E G +R+ +      + G    L  +E  +LE L    G+ V+K QI   ++ 
Sbjct: 120 AGASPVLELGELRIDTAAHRVFLDGSEVTLTAKEFSVLEQLALRAGEVVSKAQILEHVWD 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F    + N+VE ++S LR+KL   L    + + R  GY ++
Sbjct: 180 -FAYDGDPNIVEVYVSTLRRKLDAGL----IRTVRGAGYRLE 216


>gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
          Length = 236

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A++ D        +G                +S   DV  ++  +       LE
Sbjct: 14  LVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPR--MDGLE 71

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
               +RA   ++P++ ++   ++   +    +G DD V KP    E+ ARV  + RR   
Sbjct: 72  TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGR 131

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + ++   +   + +  D  D    GE   L   E  +L YLM N G  ++K +I  A+
Sbjct: 132 TQQAASTVLQVADLTLDVDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+        + + R  GY +
Sbjct: 192 W-SYDFGGQVNVVELYISYLRKKIDADR-PALIRTVRGAGYIM 232


>gi|126470034|dbj|BAF48119.1| hypothetical protein [Rhodococcus rhodochrous]
          Length = 251

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D A + +   +    DG   E   + +  E +  + R D   +   L       +E+
Sbjct: 28  VVEDEAALANLIGSYLERDGF--EATITGDGAEAIALARRIDPDVLVLDLGLPSLDGVEV 85

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R  S   ++ ++       TL     G DD + KP   RE++AR+ A+ RR + ++
Sbjct: 86  CRQLRTFSDAYVVMLTARTEELDTLIGLSVGADDYMTKPFGPRELIARIQAMMRRPRTTD 145

Query: 124 -----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +  +GR+  V G    L R E  +L  L  + G  + + Q+  A++
Sbjct: 146 TARSRQIRTFGDLSIDVEGREVTVDGVPVSLTRTEFDVLAALSQDPGIVITRAQLIGAVW 205

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G  +   +E++V+ HI  LR+KL  +      V + R +GY +
Sbjct: 206 GP-NWVGDEHLVDVHIGHLRRKLGDDATRGRYVRTVRGVGYRM 247


>gi|24115318|ref|NP_709828.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 2a
           str. 301]
 gi|30064682|ref|NP_838853.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 2a
           str. 2457T]
 gi|110807888|ref|YP_691408.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 5
           str. 8401]
 gi|300920895|ref|ZP_07137289.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|24054618|gb|AAN45535.1| transcriptional regulatory protein [Shigella flexneri 2a str. 301]
 gi|30042941|gb|AAP18664.1| transcriptional regulatory protein [Shigella flexneri 2a str.
           2457T]
 gi|110617436|gb|ABF06103.1| Transcriptional Regulatory protein basR/pmrA [Shigella flexneri 5
           str. 8401]
 gi|281603423|gb|ADA76407.1| Transcriptional regulatory protein [Shigella flexneri 2002017]
 gi|300412123|gb|EFJ95433.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|313648696|gb|EFS13136.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri 2a
           str. 2457T]
 gi|332752050|gb|EGJ82443.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           4343-70]
 gi|332752221|gb|EGJ82613.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-671]
 gi|332753248|gb|EGJ83629.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           2747-71]
 gi|332764810|gb|EGJ95039.1| transcriptional regulatory protein BasR [Shigella flexneri 2930-71]
 gi|332999212|gb|EGK18799.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-218]
 gi|333010364|gb|EGK29797.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           VA-6]
 gi|333011063|gb|EGK30477.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-272]
 gi|333012744|gb|EGK32124.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-227]
 gi|333014176|gb|EGK33532.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-304]
          Length = 222

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E         +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEDGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYMLVAN 219


>gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 254

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 18/233 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++    +    +G ++                R D+  ++  +   G   L 
Sbjct: 17  LIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMP--GMDGLT 74

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
             R +R A   +P++ ++        +   D+G DD + KP    E+LARV A+ RR   
Sbjct: 75  ACRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGAL 134

Query: 119 -----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                      L   ++  E   +R+ +  R+    G +  L R E  +LE  +++  + 
Sbjct: 135 TGEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQA 194

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + QI  A++G FD     N ++ ++  +RKK         V + R +GY++
Sbjct: 195 LTREQILRAVWG-FDFEPASNSLDVYVMYVRKKTEFDDLPRLVQTVRGVGYAL 246


>gi|226227765|ref|YP_002761871.1| phosphate regulon transcriptional regulatory protein PhoB
           [Gemmatimonas aurantiaca T-27]
 gi|226090956|dbj|BAH39401.1| phosphate regulon transcriptional regulatory protein PhoB
           [Gemmatimonas aurantiaca T-27]
          Length = 239

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +++DD   +           G  +    S      +    R  +  ++  L G  G  V
Sbjct: 11  ILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFDV 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R   +  +V ++ ++        +     G DD + KP    E++ RV AI RR  
Sbjct: 71  LEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRTG 130

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               VS +    GP+ +        V G+   L   E ++L  L   RG+   +  +   
Sbjct: 131 SATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGHLLET 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++      ++   V+ H+ +LR KL      + +++ R  GY +
Sbjct: 191 VWEAA-PDIQTRTVDMHVQRLRSKLGAAG--ELIETVRGFGYRL 231


>gi|218900386|ref|YP_002448797.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218542036|gb|ACK94430.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LAAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 223


>gi|56479487|ref|YP_161076.1| two component response regulator [Aromatoleum aromaticum EbN1]
 gi|56315530|emb|CAI10175.1| Two component response regulator [Aromatoleum aromaticum EbN1]
          Length = 220

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +      G +++  ++     ++      D   ++  L       +
Sbjct: 3   ILVVEDEPTLAAQLVEALAAAGYAVDRADNGRDAHFIGDVEPLDAVVLDLGLPL--MDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + +  RA  +  P++ ++   +    +   D+G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  TVLKKWRAAGRTMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARLRALIRRAG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     GP+ + +      V G+   L   E R+L+YLM ++G+ V+++ +   IY 
Sbjct: 121 GHASAELACGPVLLDTRAGRVSVNGDAVNLTSHELRVLDYLMHHQGEIVSRSDLTEHIYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKKL        +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKLPAG----MIETVRGLGYRM 216


>gi|121605996|ref|YP_983325.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594965|gb|ABM38404.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 219

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A++ +  + +   +  +++        +    S + D+  ++  L  +    L
Sbjct: 3   LLLVEDDAMIGEAVLQVLRAEHYAVDWVRDGVMADAALRSEQYDLVLLDLGLPKR--DGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA  + VP++  +   ++   +   D+G DD V KP    E+LAR+ A+ RR  
Sbjct: 61  DVLRALRARRASVPVLVATARDAVGDRIAGLDAGADDYVVKPYDIDELLARIRALLRRSA 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   + +    R+  V G+   L  RE  +LE L+A  G  +++ Q+   ++ 
Sbjct: 121 GRGEPVFEHKGVSLNPATREATVHGQPVSLSAREWAVLEPLLARPGAVLSRAQLEEKLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D+ V  N VE +I  +RKKL    G D + + R LGY +
Sbjct: 181 WKDD-VSSNAVEVYIHGVRKKL----GNDFIQTVRGLGYVV 216


>gi|170757250|ref|YP_001780246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122462|gb|ACA46298.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 227

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 102/225 (45%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   + D  ++    DG  ++G F + + ++ L      D+  ++  L    E   
Sbjct: 6   LVVEDEISINDILVSALRADGYKVKGVFLAKDAKDAL-DFFHPDLVLLDINLPD--ESGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R I     +P+I ++    +   +   + G DD + KP + +E+L RV    RR+  
Sbjct: 63  ELCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVNK 122

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +++   I      +V  +GR      +   L  +E  +LE+ + NR    ++  + +
Sbjct: 123 YKEKSDEEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD   E   V+ H+ +LR KL  +     +D+   +GY +
Sbjct: 183 KVWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTAFGIGYVM 226


>gi|297567507|ref|YP_003686479.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851956|gb|ADH64971.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 226

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 8/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         DDG+ ++        + +      D+  ++  L    +   +
Sbjct: 4   LLVEDDPRLAALIAEGLRDDGLMVDHAPDAAIGQGMAELEAYDLLILDVMLPEGPQAGFD 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L R +R    ++P++ ++    + + L   D+G DD + KP   RE+ AR+ A+ RR K 
Sbjct: 64  LARTLRNQRDKIPILFLTARGDMDSKLTGLDTGGDDYLTKPFDFRELRARIRALVRRAKG 123

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N         +          G+  PL  RE  ++E L  N G+  ++  +   ++ 
Sbjct: 124 EAANLIPLPKGYVLDLSAHQVLKGGQPVPLTPREYALVECLGLNPGRAYSRNSLIERVW- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  V+  VV+ ++S LR+KL    G D V++ R LGY +
Sbjct: 183 PGESEVDTKVVDVYVSSLRRKL----GEDFVETVRGLGYRL 219


>gi|226314437|ref|YP_002774333.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097387|dbj|BAH45829.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 228

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +G       +G  +      +         R D+  ++  L        E
Sbjct: 4   LVVEDDKTIAEGLHYSLSSEGYEVVLCEGKQTALEAIKQQRFDLYLLDLTLPD--GNGYE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   ++ +   P+I ++        +   D G DD + KP   RE+++R+ +  R  +  
Sbjct: 62  ICEYVKENQDAPVIFLTACDDEINVVRGLDMGADDYITKPFRIRELISRMKSSLRHYQKE 121

Query: 123 NN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N   +   G + V +         E   L   E R+L   + NRG+ +++ Q+   I+ 
Sbjct: 122 PNLSDKVRVGNVVVNTKLAKVYKGTEEVMLTALEYRLLLAFINNRGQVLSRNQLLEGIWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           L    + +N +  +I +LR+KL +       +++ R LGY +
Sbjct: 182 LDGNFINDNTLSVYIKRLREKLEDDSQNPKVIETVRGLGYRM 223


>gi|167035362|ref|YP_001670593.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166861850|gb|ABZ00258.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 224

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       ++G  ++  ++      L      ++  ++  L        
Sbjct: 3   LLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYELVILDVNLPE--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            + + +RA S   ++ ++ +  L   +   D G DD + KP    E+LAR+ ++ RR   
Sbjct: 61  TVLQRLRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQ 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +      + +          G+   L  +E  +L  LM   G+ +++TQI S ++ 
Sbjct: 121 QLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFDNKLIHTLRGVGYVLE 221


>gi|197124506|ref|YP_002136457.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196174355|gb|ACG75328.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 230

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +           G       + E           D+  ++  L        E
Sbjct: 5   LLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDV--SGTE 62

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R I++  +   VP++ ++        +  F+ G DD V KP   RE++ R+ A+ RR 
Sbjct: 63  VCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRA 122

Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       GPIRV  +     V G    L   E ++L  LM+  G+  ++ Q+   
Sbjct: 123 GARPSERPPESVGPIRVDVESHRAYVDGAEVVLTPLEFKLLTTLMSRLGRVQSREQLLED 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +  E VE   V++H+ +LR+KL +  G D +++ R +GY +
Sbjct: 183 VWEMSAE-VETRTVDTHVKRLREKLGS--GRDLLETVRGIGYRL 223


>gi|260462382|ref|ZP_05810590.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031876|gb|EEW33144.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 221

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         D G  ++     E   +L  +   D   ++  L       + 
Sbjct: 4   LVVEDDKDLNRQIADALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQ--MDGIS 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +  R  R   ++P++ ++        +   D+G DD V KP H  E+LARV A+ RR   
Sbjct: 62  VVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARVRALIRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++    GP+R+ +     +V G    L   E R+L YLM + G  V++T++   +Y  
Sbjct: 122 HASSELTCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGDVVSRTELVEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  + +LRKK+    G D +++ R +GY +
Sbjct: 182 -DFDRDSNTIEVFVGRLRKKM----GIDMIETVRGMGYRM 216


>gi|229172566|ref|ZP_04300125.1| Two-component response regulator vanR [Bacillus cereus MM3]
 gi|228611037|gb|EEK68300.1| Two-component response regulator vanR [Bacillus cereus MM3]
          Length = 247

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +  F++   E  L+      +      ++      +
Sbjct: 21  ILIVDDDQDIIRFVKANLMQEGFKV--FSAHNGERALEIINNNSIKLAILDIMMPQMDGI 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 79  ELCRRIREKHSLPIMFLSAKTSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 139 FNQNAVQVIEKKINIRGLEIDEVSRTVVLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 199 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246


>gi|254374844|ref|ZP_04990325.1| two component response regulator [Francisella novicida GA99-3548]
 gi|151572563|gb|EDN38217.1| two component response regulator [Francisella novicida GA99-3548]
          Length = 229

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +       F ++G++       +   +L ++   DV  I+  +       + 
Sbjct: 8   LVADDDKKIAQFIKTKFEENGINTTVAFDGKEALFLINTNNYDVIVIDWMMPY--LDGIS 65

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L +I+R  +   P+I +S   S +  ++   SG DD + KP    E++ RV  +Y+R K 
Sbjct: 66  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 ++   G I +     +     E+  L +RE ++L  L+ ++ + V+KT I   +
Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 186 WD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 227


>gi|226939159|ref|YP_002794230.1| BaeR [Laribacter hongkongensis HLHK9]
 gi|226714083|gb|ACO73221.1| BaeR [Laribacter hongkongensis HLHK9]
          Length = 236

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +           G  +E   N L   + L+++  + +          G   
Sbjct: 10  ILVVEDEPKLAQLLADYLHAAGFEVECLDNGLTALDRLRAAPPDLMLLDLMLPGLDG--- 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R +R+ S +P+I ++        L   + G DD + KP   RE++ARV  + RR +
Sbjct: 67  LSLCRALRSFSSLPVIMLTARVEESDRLLGLEIGADDYICKPFSPREVVARVRTVLRRSQ 126

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +           ++  P  +  D       G    L R E R+LE L+ +  +  ++ Q
Sbjct: 127 PAAAAPAAAMPADSQATPFVLDPDTLTASYHGHELELTRVEFRLLEVLVDSPRRVFSRDQ 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           +   +Y      V +  V+SHI  LRKKL   +   DP+ S   +GY  +
Sbjct: 187 LLGHVYDDH-RVVSDRTVDSHIKNLRKKLAQVQPDADPIRSVYGVGYKFE 235


>gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 224

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEV--LAAADGREALERWNEGPDVLILDVMLPDT--DG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ R+  + RR+
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRV 119

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I V    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 120 KKTEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 180 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 224


>gi|224282831|ref|ZP_03646153.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 224

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 16/226 (7%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +          +G S    +            R D+  ++  L       LE  
Sbjct: 2   VEDEPTLATAIAQRITAEGWSARVASDGASAVQAAKQLRPDLVIMDIMLPV--MDGLEAT 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122
           + I A   VP++ ++   +    +    +G DD + KP   RE++AR  A+ RR++ +  
Sbjct: 60  KRIVADRPVPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERAKV 119

Query: 123 -------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + +    R   V GE   L   E  +L  L       + + ++  
Sbjct: 120 IAKNSENEKILNFGSLVIDPAQRLVTVNGEQVHLTPTEFDLLVTLARKPKSVLTREKLLE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   D +     V+SH+  LR KL    G + + +   +GY+ +
Sbjct: 180 EVWDWVDASG-TRTVDSHVKALRHKL----GSETIRTVHGVGYAFE 220


>gi|226944932|ref|YP_002800005.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226719859|gb|ACO79030.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 221

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A     G +++            +    D+  ++  L   G+  L
Sbjct: 3   LLLVEDSVSLADELVASLQRQGYAVDWLADGRDAARQGACEPYDLMILDLGLP--GKPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  EVLREWRAQGLATPVLVLTARASWAERIEGLKAGADDYLCKPFHPEELQLRIQALLRRAH 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  + E G +++    +      E   L   E R+L YLM + G+ ++K Q+   +Y
Sbjct: 121 GLANQPQLEAGGLQLDEARQVVRCGTEDIELTAAEFRLLRYLMLHPGQLLSKGQLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   + NV+E HI++LR KL    G   ++++R  GY  
Sbjct: 181 DG-ETERDSNVIEVHINRLRGKL----GRTVIETRRGQGYRF 217


>gi|290352217|dbj|BAI78819.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +  F  +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--FVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|229097240|ref|ZP_04228202.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|229103326|ref|ZP_04234009.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|229116236|ref|ZP_04245626.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228667068|gb|EEL22520.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228680165|gb|EEL34359.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228686051|gb|EEL39967.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 214

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++           ++   +         ++   D+  ++  +        E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNNQSFDLILLDVMMPN--LNGFEVS 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   K  
Sbjct: 60  KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  ++++HI  LRKKL        + + + +GY ID
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKID 213


>gi|221369433|ref|YP_002520529.1| Transcriptional regulator, winged helix family [Rhodobacter
           sphaeroides KD131]
 gi|221162485|gb|ACM03456.1| Transcriptional regulator, winged helix family [Rhodobacter
           sphaeroides KD131]
          Length = 221

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ DG        G   E   +LE       + R +   ++  L       L
Sbjct: 4   ILIVEDDPVLADGLQVGLRLAGFGPEAVGTLEDARAALDAGRFEAMVLDLMLPD--GSGL 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L   +RA    VP++ ++    L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 62  DLLAELRAAREAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++  R E   + +     +    G    L  RE  +L  LMA+    ++K QI   +YG
Sbjct: 122 ALATPRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E H+ KLR KL    G   +++ R +GY +
Sbjct: 182 -WQEEIESNAIEVHVHKLRAKL----GHGFIETVRGVGYRL 217


>gi|166032214|ref|ZP_02235043.1| hypothetical protein DORFOR_01917 [Dorea formicigenerans ATCC
           27755]
 gi|166027937|gb|EDR46694.1| hypothetical protein DORFOR_01917 [Dorea formicigenerans ATCC
           27755]
          Length = 232

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +         G  +++ F+  E     Q   +   S I   L+  G   
Sbjct: 10  ILIVEDDTDINNLLYTALQKAGYETVQAFSGTEARMLFQMD-KAGFSLILLDLMLPGISG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR     P+I ++    L   +    SG DD + KP   +E+LAR+    R ++
Sbjct: 69  EEVLAQIRKQGNTPVIVLTAKDGLDEKIGLLTSGADDYITKPFEIQEVLARIQVQLRHMQ 128

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSAI 177
                       + +  +  +  + G + P + ++E  ILE L+ +  +  +K +IF   
Sbjct: 129 QEPEHKSVSYKNLELDRERFEVRIAGVLLPKITKQEFAILELLLEHPKQVFSKEEIFEYA 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +       E   ++ HIS +RKK++     + +D+   +GY +
Sbjct: 189 WDEH-YMGETKTLDVHISNIRKKIKAVTQEEYIDTVWGIGYRL 230


>gi|254255322|ref|ZP_04948638.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901059|gb|EAY71809.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 225

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D           F + G  ++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQEESYDVIVLDVTLPV--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +R     P++ ++    +   +   + G DD + KP    E+LARV  + RR   
Sbjct: 61  SVLKRLRDTHTTPVMFLTARGDVHDRVHGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L    G+ +++TQI S ++ +
Sbjct: 121 RETERLAVGDLEIDVVRRRVKRGSVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKVDDAFPLKLIHTVRGVGYVLE 220


>gi|83716332|ref|YP_438576.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|167576884|ref|ZP_02369758.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           TXDOH]
 gi|167615059|ref|ZP_02383694.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           Bt4]
 gi|257141635|ref|ZP_05589897.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|83650157|gb|ABC34221.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
          Length = 230

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 92/220 (41%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D             + G   +             +   D++ ++  L G       
Sbjct: 4   LIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGC--DGWT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   + P++ ++    +   +   + G DD + KP    E+LARV ++ RR + S
Sbjct: 62  VVRELRRTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRRGQSS 121

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +        + +    R    QG    L  +E  +L  LM  +G+ + ++ I S I+ + 
Sbjct: 122 DAPVLRVANLELDLVQRKARRQGSTILLTSKEFLLLWLLMRRQGEILPRSLIASQIWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVV++ I ++R K+        + + R +GY ++
Sbjct: 181 NFDSDSNVVDAAIKRVRAKVDQDYEPKLIHTVRGMGYVLE 220


>gi|304384695|ref|ZP_07367041.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328889|gb|EFL96109.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 228

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   E          L+++  ED  AI   L+      +
Sbjct: 4   ILIIEDEKSLARFVELELQHEGYETEV--QGNGRTGLEAALSEDFDAILLDLMLPEINGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  EVCRRIRREKITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVDL 121

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       E   I +  + R  +   EV  L +RE  +L  LM N     ++  + 
Sbjct: 122 EEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLTKREYELLLLLMENVNVVQSRETLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++GL D  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 SKVWGLED-GVETNVVDVYIRYLRNKIDVAGQPSYIQTVRGTGYVM 226


>gi|290959131|ref|YP_003490313.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648657|emb|CBG71770.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 249

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +                R D   ++  L       L 
Sbjct: 26  LVVDDELSITELLSMALRYEGWQIRSAGDGTGALQTARDFRPDAVVLDMMLPD--MDGLT 83

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 84  VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 143

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R++     G + +  D  +    G    L   E  +L +LM N  + ++K QI   +
Sbjct: 144 ADRRSDSVLVVGDLMLDEDSHEVSRAGANIHLTATEFELLRFLMRNPRRVLSKAQILDRV 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 204 W-SYDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 244


>gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 225

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L++  +  V  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRE--DGPGALEAGMQGGVDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    VPL+ ++       T+   D+G DD V KP    E+LARV A+ RR  V
Sbjct: 63  VARRLRAEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAV 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +A  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPQQAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|52143445|ref|YP_083384.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|51976914|gb|AAU18464.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
          Length = 229

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 62  QVCKTIRKENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V + +A T   GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHDEKANTIISGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|71066630|ref|YP_265357.1| OmpR family two-component transcriptional regulator [Psychrobacter
           arcticus 273-4]
 gi|71039615|gb|AAZ19923.1| probable two-component transcriptional response regulator (ompR
           family) [Psychrobacter arcticus 273-4]
          Length = 224

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D + + DG +      G+ ++ F+  +  E        D   ++  L       +
Sbjct: 4   ILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEMALQDGMFDAVLLDLTLP--KGDGM 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  RA H   P++ I+   ++   +   ++G DD + KP    E++AR+ A+ RR +
Sbjct: 62  TVLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVIARLQALMRRSQ 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S      G +      +    QG+   L  +E  ILE ++ +  +  ++  +   +YG
Sbjct: 122 GRSQPEVRYGEVAYQPHNQQVSYQGKTVELTIKEVAILEQMLTHPKQIHSRASLEDKLYG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + + +E N +E HI  LRKKL    G D + +KR +GY ++
Sbjct: 182 -WKQDIESNAIEVHIHHLRKKL----GNDFILTKRGIGYYLN 218


>gi|229085934|ref|ZP_04218158.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228697370|gb|EEL50131.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 223

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGYKVFEAEDGKVAQSILEKENIHLALVDIMMPFV--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFVSGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +     + +   +   LP +E  +L  L    G+  ++ ++   ++G+
Sbjct: 122 LSADVITLHGTTIDRKSFEVKCNDQTILLPLKEFELLSQLAGYPGRTFSREELIELVWGI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ HI +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHIKRLRDRFSKRTDDFQIKTVRGLGYKLE 221


>gi|228985103|ref|ZP_04145270.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155589|ref|ZP_04283697.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228627907|gb|EEK84626.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228774590|gb|EEM22989.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 232

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GMDGF 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 65  QVCKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKANAITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|253989244|ref|YP_003040600.1| DNA-binding transcriptional regulator BaeR [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780694|emb|CAQ83856.1| transcriptional regulatory protein baer [Photorhabdus asymbiotica]
          Length = 234

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 4/222 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    I          +     +           D+  ++  L G     L 
Sbjct: 11  LIVEDEPKLGQLLIDYLNAADYKTQWLLRGDEVVPYVQQHNPDIILLDLMLPGC--DGLS 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S +P+I ++        L   + G DD + KP   REI+ARV  I RR    
Sbjct: 69  VCREIRCFSDIPIIMVTAKTEEIDRLLGLEIGADDYICKPYSPREIVARVKTILRRCYRP 128

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  +   +++         + ++  L   E R+L+ +    G+ +++ Q+ + +Y    
Sbjct: 129 QDIVKQSDLQIDEACFQARYRDKILDLTPVEFRLLKTMAIRPGRVLSRDQLLNNLYDDH- 187

Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             V +  ++SHI  LR+KL         + S   LGY  + +
Sbjct: 188 RIVTDRTIDSHIKNLRRKLEQLDSNKTFIRSIYGLGYRWEAD 229


>gi|229011982|ref|ZP_04169162.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
 gi|229060400|ref|ZP_04197766.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|229133551|ref|ZP_04262378.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|229167559|ref|ZP_04295297.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228616121|gb|EEK73208.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228649951|gb|EEL05959.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|228718990|gb|EEL70607.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|228749396|gb|EEL99241.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
          Length = 214

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++           ++    + +  E +    ++    I   ++       E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYTV--VVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVS 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   K  
Sbjct: 60  KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNHLVFKEVRIDVDAYRVYVNDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  ++++HI  LRKKL        + + + +GY ID
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKID 213


>gi|169350204|ref|ZP_02867142.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
 gi|169292987|gb|EDS75120.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
          Length = 223

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G  +   ++ E    +  +   D+  I+  +        E
Sbjct: 6   LVVDDEKDIRELIGFYLNKEGFEMLEASNGEEALDIFENEYVDLGIIDVMMPV--MDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L   ++    +P+I ++     +  L  F  GVDD V KP    E++ARV A+ +R  V 
Sbjct: 64  LVENLKEFKDIPVIMLTAKGESKDKLRGFSVGVDDYVVKPFDPTELMARVKAVLKRYSVN 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++N  +   +    +  +     E+  LP ++  ++  L  +  +  ++ Q+   I+G+ 
Sbjct: 124 TSNIIKLNDVEFDGEKYEIRYHDEIIHLPLKQFELVFELAKHPDQIFSREQLIEKIWGM- 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           D    +  V+ HI ++R+ L +  GF  V + R LGY ++ 
Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFKVV-TVRGLGYKVEV 222


>gi|158339404|ref|YP_001520581.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309645|gb|ABW31262.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 238

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 97/233 (41%), Gaps = 16/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +   +G   E  ++      + +  + D+  ++  L   G   L
Sbjct: 5   ILIVEDEKEIAQLVRNMLETEGFICETLSNGADALRVVTVLQPDLVILDLMLP--GLDGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   IR  S      ++ ++        +    +G DD + KP   RE++ARV A+ RR
Sbjct: 63  EVCTRIRQQSLAKDPYILMLTARAEELDRIIGLTTGADDYLTKPFSPRELIARVRALLRR 122

Query: 119 LKVSNNR----AETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVA 169
                        T    V  +    +        E+  L   E ++L+  ++  G+  +
Sbjct: 123 SLRGEQSDHLLYRTESFTVDVEHHIAQRHLSGQEAEMLDLTSLEFKLLQTFLSYPGRAWS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +TQ+   ++G  D   ++ VV++ +++LRKK+  N      + + + +GY  +
Sbjct: 183 RTQLIDNLWGN-DFFGDDRVVDTQVARLRKKIEVNPTQPQFIKTIQGVGYKFE 234


>gi|157375725|ref|YP_001474325.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318099|gb|ABV37197.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 230

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D        +  +      +S   D+  ++  L   G   L
Sbjct: 9   ILIVEDELKLAQLLADYLCDSSFEPHQLHRGDEVLGWLASHPCDLILLDLMLP--GLDGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + IR HS +P+I I+        L   + G DD + KP   RE++ARV A+ RR   
Sbjct: 67  EVCKQIRQHSNIPIIMITARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVIRRVVN 126

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + N  +   IR+  +G      G    L + E  +   +    G+  ++ Q+   I
Sbjct: 127 QTSSNTNDIQLDGIRLDEEGFKVSKSGFQCELTKVEFYLFHAMFKQPGRIFSRDQLMDII 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           Y      V +  ++SHI K+RKK+ +       V S    GY  +
Sbjct: 187 YDDR-HVVSDRTIDSHIKKVRKKIASIGIEESAVHSVYGAGYKYE 230


>gi|16804460|ref|NP_465945.1| hypothetical protein lmo2422 [Listeria monocytogenes EGD-e]
 gi|47095903|ref|ZP_00233507.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217963478|ref|YP_002349156.1| regulatory protein VanR [Listeria monocytogenes HCC23]
 gi|224500135|ref|ZP_03668484.1| regulatory protein VanR [Listeria monocytogenes Finland 1988]
 gi|254827997|ref|ZP_05232684.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254831155|ref|ZP_05235810.1| regulatory protein VanR [Listeria monocytogenes 10403S]
 gi|254900440|ref|ZP_05260364.1| regulatory protein VanR [Listeria monocytogenes J0161]
 gi|254913321|ref|ZP_05263333.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937702|ref|ZP_05269399.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284802860|ref|YP_003414725.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578]
 gi|284996001|ref|YP_003417769.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923]
 gi|16411910|emb|CAD00500.1| lmo2422 [Listeria monocytogenes EGD-e]
 gi|33439124|gb|AAQ18702.1| putative response regulator [Listeria monocytogenes]
 gi|47015780|gb|EAL06709.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217332748|gb|ACK38542.1| regulatory protein VanR [Listeria monocytogenes HCC23]
 gi|258600380|gb|EEW13705.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610305|gb|EEW22913.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284058422|gb|ADB69363.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578]
 gi|284061468|gb|ADB72407.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923]
 gi|293591325|gb|EFF99659.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 231

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            ++ DD   + D       ++G ++  + + +  E   L    +  +  ++  +      
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTI--YQAYDGAEVWRLVQEKQPTLVILDIMMPE--MN 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R++R +    P++ +S        +    +G DD + KP +  E+  RV AI RR
Sbjct: 61  GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++       VS ++   GPI V        V G+   L   E  IL  L +  G+  +  
Sbjct: 121 MQQMSQAEPVSQDKVIIGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            IF  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 181 YIFEKIWQEK-ALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 230


>gi|294788403|ref|ZP_06753646.1| DNA-binding response regulator CpxR [Simonsiella muelleri ATCC
           29453]
 gi|294483834|gb|EFG31518.1| DNA-binding response regulator CpxR [Simonsiella muelleri ATCC
           29453]
          Length = 228

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 23/234 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +L+DD   + +        +G+ +      E   +E L S    DV  +++ +   G   
Sbjct: 5   LLVDDDDTLTELLAEYLTAEGLEVNRMPDGESGVKEILHSGNSYDVVILDSMMPKMG--G 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +RA S++P+I ++        +   + G DD V KP   RE+LAR+ AI RR +
Sbjct: 63  LDVLKTVRAQSKIPIIMLTAKGDDIDRIIGLEMGADDYVPKPCQPRELLARINAILRRAQ 122

Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +N       N      + ++   R   +      L   E  +LE LM + G+ V+K  +
Sbjct: 123 HNNGDSNNAANSLSVSNVTLYPAKRQASIGDTPLELTSTEFNLLEALMRHAGQVVSKETL 182

Query: 174 ----FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                      FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 SLEALDRKLAKFD-----RSIDVHISSIRHKLGDP---SLIQTVRGLGYLFVKN 228


>gi|228991893|ref|ZP_04151829.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228998007|ref|ZP_04157608.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|229005564|ref|ZP_04163274.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228755664|gb|EEM04999.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228761740|gb|EEM10685.1| DNA-binding response regulator [Bacillus mycoides Rock3-17]
 gi|228767622|gb|EEM16249.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 223

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +  F + + +       +E++      ++       
Sbjct: 4   ILLADDDGHIRELLHYHLQKEGYKV--FEAEDGKVAQSILEKENIHLAVVDIMMPFIDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +     + +   +   LP +E  +L  L    G+  ++ ++   ++G+
Sbjct: 122 LSADVITLHGTTIDRKSFEVKCNDQTILLPLKEFELLSQLAGYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ HI +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHIKRLRDRFSKRTDDFQIKTVRGLGYKLE 221


>gi|91789521|ref|YP_550473.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91698746|gb|ABE45575.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 219

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 9/219 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A++ +  + +   +  +++        +    S + D+  ++  L  +    L
Sbjct: 3   LLLVEDDAMIGETVLHVLRAEHYAVDWVRDGSMADQALRSEQYDLVLLDLGLPQR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA     P++  +   ++   +   D+G DD V KP    E+LAR+ A+ RR  
Sbjct: 61  EVLRSLRARRNATPVLVATARDAIGDRIAGLDAGADDYVVKPYDIDELLARIRALIRRSA 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   + +    R+  V G+   L  RE  +LE L+A  G  +++ Q+   ++ 
Sbjct: 121 GRGEPVFEHKGVSLNPATREASVHGQPVSLSAREWAVLEALLARPGVVLSRAQLEEKLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             DE V  N VE +I  +RKKL    G + + + R LGY
Sbjct: 181 WKDE-VSSNAVEVYIHGVRKKL----GNELIQTVRGLGY 214


>gi|300717134|ref|YP_003741937.1| transcriptional activator [Erwinia billingiae Eb661]
 gi|299062970|emb|CAX60090.1| Transcriptional activator [Erwinia billingiae Eb661]
          Length = 229

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D            G+ G +++   S +  E L  +   D  A+   ++  G    
Sbjct: 3   ILFVEDEEKTSSYLSRALGESGFTVDV--SADGTEGLYYALEFDYDAVILDVMLPGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IRA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  RVLEGIRASKQTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRAT 120

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     + +    R     G    L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGADITQLHIHDLHLDLLARRVVRAGNRLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+        + + R +GY ++ 
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDAPFDVKLLHTVRGMGYVLEV 223


>gi|227877766|ref|ZP_03995799.1| two-component system regulator [Lactobacillus crispatus JV-V01]
 gi|256843617|ref|ZP_05549105.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256850093|ref|ZP_05555523.1| two-component system regulator [Lactobacillus crispatus MV-1A-US]
 gi|262047381|ref|ZP_06020338.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380726|ref|ZP_06626774.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|312984347|ref|ZP_07791689.1| DNA-binding response regulator CsrR [Lactobacillus crispatus
           CTV-05]
 gi|227862625|gb|EEJ70111.1| two-component system regulator [Lactobacillus crispatus JV-V01]
 gi|256615037|gb|EEU20238.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256713065|gb|EEU28056.1| two-component system regulator [Lactobacillus crispatus MV-1A-US]
 gi|260572355|gb|EEX28918.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290922690|gb|EFD99644.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|310894272|gb|EFQ43352.1| DNA-binding response regulator CsrR [Lactobacillus crispatus
           CTV-05]
          Length = 238

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+    + L+ +  +D  AI   L+      L
Sbjct: 4   ILIIEDEKNLSRFVELELQHENYETVVENNGR--KGLEDALSQDFDAILLDLMLPDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+K+
Sbjct: 62  EIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAK 170
                          +   + + +  R      G+   L +RE  +L  L+ N+   V++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 182 DQLLNKIWGP-ESNIETNVVEVYVRYLRNKIDAPGQPSYIKTVRGTGYMV 230


>gi|237729297|ref|ZP_04559778.1| DNA-binding response regulator CreB [Citrobacter sp. 30_2]
 gi|226909026|gb|EEH94944.1| DNA-binding response regulator CreB [Citrobacter sp. 30_2]
          Length = 229

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  I +   +G S+E F               D   ++  L       
Sbjct: 5   LIWLVEDEQGIADTLIYMLQQEGFSVEAFERGFPVLEKSRQQCPDAIILDVGLPD--ISG 62

Query: 61  LELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R +   H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+
Sbjct: 63  FELCRRLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122

Query: 120 K---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     ++    G   +               L R E  +L+ L+ + G+  ++ Q+   
Sbjct: 123 QKFSTPSSMTRCGDFELNELAAQITWFSIPLNLTRYEFLLLKTLLMSPGRIYSRQQLMDL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++    +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 183 VWADAQDTFD-RTVDTHIKTLRAKLRAINPELSPINTHRGMGYSL 226


>gi|225387530|ref|ZP_03757294.1| hypothetical protein CLOSTASPAR_01283 [Clostridium asparagiforme
           DSM 15981]
 gi|225046366|gb|EEG56612.1| hypothetical protein CLOSTASPAR_01283 [Clostridium asparagiforme
           DSM 15981]
          Length = 233

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   +++       ++G  +  F   +      S    D+  ++  +   G   L
Sbjct: 5   IYVADDELHIRNLIQTFLANEGYEVRTFADGDSLFQAFSERCPDLIILDIMMP--GTDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR  S+VP++ +S   S    +     G DD + KP    E++ARV A++RR + 
Sbjct: 63  SLCARIRGESRVPIMIVSAKDSPLDRVTGITLGSDDYMVKPFLPLELVARVKALFRRAEY 122

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S   A    + G + +    R   V GE F +   E   L YL+   G+ V+K ++   I
Sbjct: 123 SQTEAPAAFKCGNLLLEQGARTITVGGEAFSVTPTEFDFLSYLLERAGQAVSKQELMREI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + L D  ++  V +  + +LR+KL+       V +    G+ ++
Sbjct: 183 WKLPDYELDTRVADDLVKRLRRKLKEAGCSASVKTVWGFGFRLE 226


>gi|78776518|ref|YP_392833.1| two component transcriptional regulator [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497058|gb|ABB43598.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas denitrificans DSM 1251]
          Length = 224

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 94/220 (42%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++  S++  ++     +L  +   D+  ++  +   G   +
Sbjct: 3   ILVVEDDEKIASFIKKGLQEESYSVDVTSNGYEAIYLVETNSYDIVLLDLMI--HGLGGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  +   P+I ++   +++  ++  D G +D + KP    E+LAR+ +  R   
Sbjct: 61  DVCKNIRGKNIATPIIMLTARDAIKDKVEGLDCGANDYLTKPFSFEELLARIRSKLRTTS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++      + + +  R+ +   +   L  +E  +LEYL  N  K ++   I       
Sbjct: 121 TLSSTIAIADLTINTARREVKRGDKKINLTAKEYALLEYLARNSKKLLS-ETIIKENLSD 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             E    N+V  +I +LR K+        + + R LGY +
Sbjct: 180 MAEVSMSNIVNVYIYRLRNKIDKDYEPKLIHTVRGLGYML 219


>gi|30023294|ref|NP_834925.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228955506|ref|ZP_04117511.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229147792|ref|ZP_04276135.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229193510|ref|ZP_04320457.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|29898855|gb|AAP12126.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228590042|gb|EEK47914.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228635805|gb|EEK92292.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228804298|gb|EEM50912.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 224

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEV--LAAADGREALERWNEGPDVLILDVMLPDT--DG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 120 KKTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 180 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 224


>gi|91976489|ref|YP_569148.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91682945|gb|ABE39247.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 241

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D  +  F + G   +  +  E    L  S   DV  ++  L  +    L
Sbjct: 18  LLIIEDDRESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVVDRMLPKR--DGL 75

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 76  SVIGTLREKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +          GE   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 136 GPAEETSYRVGDLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 196 D-YHFDPQTNVIDVHISRLRAKIDKGFDRPLLHTIRGAGYMI 236


>gi|308068866|ref|YP_003870471.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858145|gb|ADM69933.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 233

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +++        +G  +   ++         S   DV  ++  +        +
Sbjct: 7   LVIDDEWNMRNLLRIYLSKEGFHVTEASNGSEGLKAFRSQTHDVVVLDVMMPD--MDGWQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  + VP++ ++    ++  +     G DD V KP+   E++AR+ A+ RR    
Sbjct: 65  VCKKMREIAPVPILMLTARGEVKDKVLGLGIGADDYVVKPVDPEELIARIYALLRRSSHQ 124

Query: 123 ------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +     + ++ + R   V  E   L ++E  IL+ L  +  +   +  I   
Sbjct: 125 AHAVVREQKLTFPDLTIYPERRQVLVLNENIDLTQKEYDILQLLAQHPQRTFERDAIVER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D   E  V+++HI  +R+KL+   L ++P+ +   +GY  D
Sbjct: 185 LWGN-DFLGENRVIDTHIKNIREKLQFVGLTYNPIKTVWGIGYKWD 229


>gi|239629091|ref|ZP_04672122.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519237|gb|EEQ59103.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 240

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +        +G  + + ++  E  E+L+   + D+  ++  +   G   
Sbjct: 13  ILVCDDDKQIVEAIDIYLTGEGFQVIKAYDGYEALEYLE-GNQVDLLIVDVMMP--GLDG 69

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +     +R +S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 70  IRTTLKVRENSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 129

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +      + G +++  D ++  V G+   L   E  IL  L+ N GK  +  +
Sbjct: 130 QLGNMNQQAEGQVFKCGGLQINDDNKEVTVDGDPIKLTPIEYNILLLLVKNAGKVFSIDE 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 190 IYEQIWNE-EAIGADNTVAVHIRHIREKIEINPREPKYLKVVWGVGYKIE 238


>gi|116073933|ref|ZP_01471195.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069238|gb|EAU74990.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 248

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A  +          G ++              +   D+  ++  +        
Sbjct: 11  ILVVDDEASSRRILETRLSMIGYNVITACDGNEALECFRNVEPDLVVLDVMMP--KLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVDK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++   +   +R+ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|329922877|ref|ZP_08278393.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328941650|gb|EGG37935.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 231

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 92/226 (40%), Gaps = 14/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++E   + + +E L+     D   +   ++       +
Sbjct: 5   LVVDDEISISSAVAYALRREGYTVE--TAGDGQEALERVESFDPDVMVLDVMMPRLSGYD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +    +  ++ ++    +   +   + G DD + KP   REI+ARV A+ RR +  
Sbjct: 63  VCRKLEDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRTP 122

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +      + +    R    +G+   L  +E  ++  L  N  +  ++  +
Sbjct: 123 EAAGKQAPEQHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSREAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              ++ + D A     V+ H+ +LRKKL N+   + + +   +GY 
Sbjct: 183 LEQVWDM-DFAGGTRTVDIHVQRLRKKLGNQ--HEVIQTVYGIGYK 225


>gi|304309784|ref|YP_003809382.1| Two-component transcriptional regulatory protein [gamma
           proteobacterium HdN1]
 gi|301795517|emb|CBL43715.1| Two-component transcriptional regulatory protein [gamma
           proteobacterium HdN1]
          Length = 246

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 100/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G +++        +   S    ++  ++  L   GE  L
Sbjct: 14  ILVVDDDARLRSLLQRYLEEQGYAVKAVADAPQMDKALSRELYNLMVLDLMLP--GEDGL 71

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A +++P+I ++        ++  D+G DD + KP + RE++AR+ A+ RR  
Sbjct: 72  SICRRLREATNRIPIIMLTAKGDDNDRINGLDAGADDYLPKPFNPRELMARIKAVLRRQV 131

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S+   E GP  +    R     GE   L   E  +L+ L+ +  + + + +
Sbjct: 132 KELPGAPSQSDESVEFGPYALDLSTRALTKHGESVALTTGEFAVLKALVQHPREPLTRDK 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G    A+E   ++  +S+LR+ + +       + +   +GY  
Sbjct: 192 LMNLARGREWSAME-RSIDVQVSRLRRLIEDDPSNARYIQTVWGVGYVF 239


>gi|289625552|ref|ZP_06458506.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289650888|ref|ZP_06482231.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487477|ref|ZP_07005521.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157992|gb|EFH99068.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866911|gb|EGH01620.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 227

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A+     +    + G+ ++  ++         S   D+  ++  L       L
Sbjct: 4   ILAIEDDAITAKEIVTELSNHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPE--MDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ IS    +   +    +G DD + KP    E+ ARV  + RR  
Sbjct: 62  TIVTHLRAQGIATPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSN 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   + +    R+    GE   L   E ++LE+LM N G+ + +  IF  +
Sbjct: 122 PVSAGKTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +      N+++ HI +LRKK+        + + R  GY I
Sbjct: 182 WG-YHFDPGTNLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
          Length = 224

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEV--LAAADGREALERWNEGPDVLILDVMLPDT--DG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ R+  + RR+
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRV 119

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I V    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 120 KKAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 180 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 224


>gi|255657538|ref|ZP_05402947.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452790|ref|ZP_06894477.1| response regulator [Clostridium difficile NAP08]
 gi|296879958|ref|ZP_06903930.1| response regulator [Clostridium difficile NAP07]
 gi|296258338|gb|EFH05246.1| response regulator [Clostridium difficile NAP08]
 gi|296429072|gb|EFH14947.1| response regulator [Clostridium difficile NAP07]
          Length = 228

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 89/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G  +   ++        +  + D++ I+  L        
Sbjct: 4   IFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNKFDLALIDISLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+ +  +P+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TICTEIKENQDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  E   + V +     +  G    L   E R+L   ++N    + + ++   ++   
Sbjct: 122 FGSTFEICGLYVDTATGVVKKNGNEVFLSALEYRLLLVFISNPKSIITRVRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ +       + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIEDDPSSPQIILTVRGTGYRL 221


>gi|241206417|ref|YP_002977513.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860307|gb|ACS57974.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 246

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  + L    G       S    + +    + D+  ++A L   GE   
Sbjct: 15  ILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLP--GEDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA   VP++ ++        +   + G DD V KP + RE+LAR+ +I RR   
Sbjct: 73  SICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRASY 132

Query: 122 SNNRAE------TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++++ E          R+    R      G    +   E  IL     N  K + + Q+ 
Sbjct: 133 AHHQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTREQLL 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
           S  +      VE   +++HIS++R+K+   L  DP  + + R  GY
Sbjct: 193 SMTHAGSAGPVE-RSIDAHISRVRQKIEPNL-KDPTFIKTVRLGGY 236


>gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 223

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+     G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL N    + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLDC 223


>gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 222

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          +G  +    +        +    DV  ++  L   G    E
Sbjct: 4   LLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLP--GRSGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+++   P++ ++         D FD G DD + KP   R ++AR+ A+ RR   
Sbjct: 62  VLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGAP 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +       +       L  RE  +LE+LM N+   V K  I + ++  
Sbjct: 122 ERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + NVVE ++  LR+K+    G + +++ R +GY +
Sbjct: 182 HHHGPD-NVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220


>gi|226199397|ref|ZP_03794955.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|225928473|gb|EEH24502.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
          Length = 217

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 9/219 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D  ++ +G       DG +++     +    L +   E    +   L       +++
Sbjct: 2   LVEDDRMIAEGVRKALKADGCAVDWVQDGDA--ALTALGGEAYDLLLLDLGLPKRDGIDV 59

Query: 64  PRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
            R +RA    +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR    
Sbjct: 60  LRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGR 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG +
Sbjct: 120 SESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG-W 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 179 GEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 213


>gi|167763747|ref|ZP_02435874.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC
           43183]
 gi|167697863|gb|EDS14442.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC
           43183]
          Length = 227

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 98/218 (44%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       + G ++    ++     + +  ++D+   +  L        
Sbjct: 4   ILVIEDENRMAELLKRGLEESGHTVGTATNVSEGLRMFAYEKQDIIISDIMLPD--GSGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R IR  ++ VP++ ++   +    L+ FDSG DD + KP   RE+ AR++ + +R +
Sbjct: 62  DLCRDIRRQNETVPILILTALGTTDDKLEGFDSGADDYMVKPFDFRELNARISILLKRCQ 121

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E   ++V+   +     G+   L  +E  +L + + N  + + +T+I   ++ 
Sbjct: 122 IPTVECIEYADLKVYLRTKSVSRNGQSIILTPKEYNLLLFFVQNPERILTRTEIAEKVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
                   N ++ +I+ LRKK+        + +K  +G
Sbjct: 182 TH-FDTGTNFIDVYINYLRKKIDKNFNTKLIHTKPGMG 218


>gi|157156750|ref|YP_001461733.1| DNA-binding transcriptional activator CusR [Escherichia coli
           E24377A]
 gi|194437422|ref|ZP_03069519.1| transcriptional regulatory protein CusR [Escherichia coli 101-1]
 gi|218553112|ref|YP_002386025.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI1]
 gi|253774451|ref|YP_003037282.1| CusR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160647|ref|YP_003043755.1| DNA-binding transcriptional activator CusR [Escherichia coli B str.
           REL606]
 gi|256020522|ref|ZP_05434387.1| DNA-binding transcriptional activator CusR [Shigella sp. D9]
 gi|293418681|ref|ZP_06661116.1| DNA-binding transcriptional activator CusR [Escherichia coli B088]
 gi|300825001|ref|ZP_07105099.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|307315262|ref|ZP_07594839.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|331666916|ref|ZP_08367790.1| transcriptional regulatory protein CusR [Escherichia coli TA271]
 gi|331676223|ref|ZP_08376935.1| transcriptional regulatory protein CusR [Escherichia coli H591]
 gi|332281703|ref|ZP_08394116.1| transcriptional regulatory protein cusR [Shigella sp. D9]
 gi|157078780|gb|ABV18488.1| transcriptional regulatory protein cusR [Escherichia coli E24377A]
 gi|194423591|gb|EDX39581.1| transcriptional regulatory protein CusR [Escherichia coli 101-1]
 gi|218359880|emb|CAQ97422.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli IAI1]
 gi|242376342|emb|CAQ31038.1| cusR [Escherichia coli BL21(DE3)]
 gi|253325495|gb|ACT30097.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972548|gb|ACT38219.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli B str. REL606]
 gi|253976742|gb|ACT42412.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli BL21(DE3)]
 gi|291325209|gb|EFE64624.1| DNA-binding transcriptional activator CusR [Escherichia coli B088]
 gi|300522521|gb|EFK43590.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|306905360|gb|EFN35899.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|315059824|gb|ADT74151.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli W]
 gi|320198302|gb|EFW72906.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli EC4100B]
 gi|323184946|gb|EFZ70314.1| transcriptional activator protein irlR [Escherichia coli 1357]
 gi|323379609|gb|ADX51877.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli KO11]
 gi|323945141|gb|EGB41202.1| heavy metal response regulator [Escherichia coli H120]
 gi|323963248|gb|EGB58814.1| heavy metal response regulator [Escherichia coli H489]
 gi|331066140|gb|EGI38024.1| transcriptional regulatory protein CusR [Escherichia coli TA271]
 gi|331076281|gb|EGI47563.1| transcriptional regulatory protein CusR [Escherichia coli H591]
 gi|332104055|gb|EGJ07401.1| transcriptional regulatory protein cusR [Shigella sp. D9]
          Length = 227

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLMKPFAFAELLARVRTLLRRGA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|46908593|ref|YP_014982.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093002|ref|ZP_00230782.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226224969|ref|YP_002759076.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254991991|ref|ZP_05274181.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
 gi|46881865|gb|AAT05159.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018656|gb|EAL09409.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225877431|emb|CAS06145.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465285|gb|EGF36542.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328471342|gb|EGF42239.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332312851|gb|EGJ25946.1| Two-component response regulator [Listeria monocytogenes str. Scott
           A]
          Length = 231

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            ++ DD   + D       ++G ++  + + +  E   L    +  +  ++  +      
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTI--YQAYDGAEVWRLVQEKQPTLVILDIMMPE--MN 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R++R +    P++ +S        +    +G DD + KP +  E+  RV AI RR
Sbjct: 61  GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++       VS ++   GPI V        V G+   L   E  IL  L +  G+  +  
Sbjct: 121 MQQMSQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            IF  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 181 YIFEKIWQEK-ALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 230


>gi|315105932|gb|EFT77908.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 236

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G S            +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDTALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLP--GRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
            + + IR  S VP+I ++        +    +G DD V KP    E++AR+ A  R    
Sbjct: 68  RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G +    +  +V  H+ +LR K+ RN      + + R +GY I+
Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230


>gi|298249773|ref|ZP_06973577.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547777|gb|EFH81644.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 94/230 (40%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +      G  +           L    + DV  ++  L       L
Sbjct: 13  ILLVEDENDLAKIVMRELRGAGYEVFHAEDGLKALDLHERHQPDVVLLDWMLPR--LNGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S  P++ ++        +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 71  EVLRRLRQSSATPVLMLTARSEEADRVIGLEIGADDYLTKPFSMRELVARVRALLRRAEL 130

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +V++     G +R+     +  + G +  L   E  +L+ L+ + G+  ++
Sbjct: 131 IKLTISADRRVASEELCLGNLRLNPQTHEVTLDGALLDLSPTEFALLQLLLRSPGRAFSR 190

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +   ++        +  V++ + +LRKKL      D +++   +GY +
Sbjct: 191 SYLIETLWSGT-YIGGDRSVDNVVLRLRKKLGKLG--DSIETIWGIGYRL 237


>gi|239982704|ref|ZP_04705228.1| two-component system regulator [Streptomyces albus J1074]
 gi|291454552|ref|ZP_06593942.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357501|gb|EFE84403.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 232

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 18/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58
            +L++D   V     A+    G  +    S E        A      V  ++  L  +  
Sbjct: 3   LLLVEDDNHVAGALSAILSRHGFQVTHARSGEEALKALLPAGGPPFGVVLLDLGLPDQ-- 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+   IRA + VP+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR
Sbjct: 61  DGYEVCGKIRARTSVPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVARR 120

Query: 119 LKVSNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +  +              G ++V    R   V GEV  L R+E  +L  L+   G    
Sbjct: 121 NQPGDAEGAATPAPGALVIGAVQVELPTRRVSVDGEVVALTRKEFDLLALLVQRPGVVFR 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + QI S ++    E      +E H++ LR KLR       +++ R +GY +
Sbjct: 181 REQIISEVWRTSWEGTG-RTLEVHVASLRSKLRRPA---LIETVRGVGYRL 227


>gi|209548528|ref|YP_002280445.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534284|gb|ACI54219.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 248

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++ S    DV  I+  L  +    L
Sbjct: 26  ILIIEDDLEAAVYLTKAFREAGIVADHASDGEAGLFMGSENTYDVIVIDRMLPRR--DGL 83

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R  +   P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 84  SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +         + +     +    G+  PL  RE R+LEYLM N G+ V +T +   ++
Sbjct: 144 TPDQDVVYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 204 D-YHFDPQTNVIDVHVSRLRSKIEKDYSQPLLKTIRGAGYMI 244


>gi|110598537|ref|ZP_01386806.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110339841|gb|EAT58347.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 230

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +           G      ++ E           D+  ++  L   G   
Sbjct: 5   MLLVVEDDPHLAQLLGYNLERAGFKCHVSSTGEDALLQLVRKSFDLVLLDVMLP--GIDG 62

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ R IR +     +P+I ++        +  F+ G+DD V KP   RE++ R+ AI++
Sbjct: 63  FEVCRQIRQNQLFRDLPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELILRIRAIFK 122

Query: 118 RLKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +    R       G + V        ++G    L   E ++L  L+  +G+  ++ ++
Sbjct: 123 RDRRHGGRVPEQLRAGTLDVDLVRHLVTLEGRELLLTLMEFKLLAALLKRKGEAQSREKL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S ++ + D ++    +++HI++LR+KL        + + R  GY  +
Sbjct: 183 LSDVWDV-DRSINTRTIDTHITRLREKLGETG--RMIKTVRGFGYKFE 227


>gi|52144660|ref|YP_082168.1| response regulator [Bacillus cereus E33L]
 gi|51978129|gb|AAU19679.1| response regulator [Bacillus cereus E33L]
          Length = 225

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPT--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDETRHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|308176281|ref|YP_003915687.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743744|emb|CBT74716.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 246

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G      +          S   DV  ++  L   G    E
Sbjct: 25  LVVDDEPSLAELVAMGTRMLGWEATMAHDGPEAVATARSLAPDVLVLDWMLP--GFDGPE 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R H  ++P++ ++   +++  ++   +G DD V KP    E+L R+  +  R   
Sbjct: 83  VLRKVRTHFPEIPVLFLTAKDAVEDRIEGLGAGADDYVAKPFSLEEVLIRLHRLVERSGA 142

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +     G + + +D  D    G    L   E  +L YLM N  + V+K+QI   ++
Sbjct: 143 ATADSAELVVGDLVLNTDSHDVSRAGREISLTATEFDLLSYLMNNARRVVSKSQILDNVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ +      + + R +GY +
Sbjct: 203 -HYDFDGQANIVELYISYLRKKI-DVDAEPMIHTVRGVGYVL 242


>gi|289678852|ref|ZP_06499742.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae FF5]
          Length = 236

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +      G+ G  ++          L    R D+  ++  L   G    
Sbjct: 14  ILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLP--GIDGW 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++  ++RA   VP++ ++    LQ  +   + G DD + KP    E+L R+  I RR + 
Sbjct: 72  QIIEVLRARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVV 131

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R    Q +V  L  +E  +L  L+   G  +++ QI S ++ +
Sbjct: 132 READHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWDM 191

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+        + + R +GY  + 
Sbjct: 192 -NFDSDTNVVDVAIKRLRSKVDLPYPVKLIHTVRGIGYVCEV 232


>gi|237665467|ref|ZP_04525455.1| two-component response regulator [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237658414|gb|EEP55966.1| two-component response regulator [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 228

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 90/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D  ++      L   +G ++    +      + +  + D++ I+  L        
Sbjct: 4   IFLVEDDKVIAKNLTLLLNSEGFTVTHAPTRGDAISMLAQNKFDLALIDISLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+    R+ + 
Sbjct: 62  TVCTEIKEMMNIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIKNALRKSES 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E   + V +     +  G    L   E R+L   ++N    + +T++   ++   
Sbjct: 122 FGTNFEIRGLYVDTVSGIVKKNGNEVFLSALEYRLLLVFISNPKSIITRTKLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+  +      + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENDPADPQIILTVRGTGYRL 221


>gi|192362017|ref|YP_001981895.1| DNA-binding response regulator CreB [Cellvibrio japonicus Ueda107]
 gi|190688182|gb|ACE85860.1| two-component response regulator CreB [Cellvibrio japonicus
           Ueda107]
          Length = 240

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSS-AREDVSAIEAFLIGKGEK 59
            ++++D   + +  + +   +  +      +     +LQ+S  R+ V  +   +      
Sbjct: 6   ILILEDEPSIAESLVFVLESESFTTHWETLASRALAYLQASPQRQPVDLVVMDVGLPDMT 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E  + +R  S+VP+I ++   S    +   + G DD V KP   RE+ ARV AI +R 
Sbjct: 66  GFEACKQLRRFSEVPVIFLTARGSELDRVVGLEIGADDYVVKPFSPRELAARVKAILKRT 125

Query: 120 K--------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +         + +  +     + ++ +      ++  L R E  +L+ ++   G+  ++ 
Sbjct: 126 RQVGATLASAAADVQDASEFVIDTERKTIHYHQQLLGLTRLEFSLLQAMVMQPGRVFSRE 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           Q+  A+ G+  +A  +  ++ HI  LR KLR  K G +P+ + R  GY
Sbjct: 186 QLLDAL-GISTDAGYDRSIDGHIKTLRAKLRALKPGAEPIKTLRGFGY 232


>gi|163734401|ref|ZP_02141841.1| probable two-component response regulator transcription regulator
           protein [Roseobacter litoralis Och 149]
 gi|161392409|gb|EDQ16738.1| probable two-component response regulator transcription regulator
           protein [Roseobacter litoralis Och 149]
          Length = 223

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 110/225 (48%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A V D        +G S++   + E    L +    DV  ++  L   G +  
Sbjct: 3   ILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLP--GIQGQ 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA  S+ P++ ++     +  ++    G DD + KP    E++AR+ A++RR  
Sbjct: 61  GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                VS+     G I       +  V+ +   L ++ER +L+ L+ + G+ +++ +I +
Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++GL  + +  NVV+ ++ +LR+KL  +     + + R +GY +
Sbjct: 181 TVWGLNADPL-TNVVDVYVGRLRRKLGQEG--QRIVTLRNVGYRM 222


>gi|111022019|ref|YP_704991.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821549|gb|ABG96833.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 228

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A +++   A    +G  +   +          ++  DV  ++  L   G   LE
Sbjct: 7   LVVDDEATIREAVAARLRAEGFDVVTASDGPSAVAECEASSPDVLVLDVMLP--GYDGLE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R ++A   VP++ ++        L     G DD ++KP   R ++ARV A+ RR   +
Sbjct: 65  VCRRVQASRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRRADRA 124

Query: 123 NNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G I V    R      +   L R E  +L Y  +     +A+  + +
Sbjct: 125 QETVPAERDGLSVGDIEVDLVERRVRRGVDEIHLTRTEFDLLAYFASRPRAAIARESLLA 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G  D A     V+SH+  LR+KL    G D + +   +GY++D 
Sbjct: 185 EVWGWGDGAG-SRTVDSHVKALRRKL----GGDLIRTVHGVGYALDV 226


>gi|127513276|ref|YP_001094473.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126638571|gb|ABO24214.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 224

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 106/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+         + G  ++   + +   +  ++   D++ I+  L  +    +
Sbjct: 3   ILVVEDDPLLSHHLKVQLSELGNQVQVAQTAKEGFYQATNYPIDIAIIDLGLPDQ--DGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLIQSLRKAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +  +GP+ +    +   +      +   E +ILEYLM +  + VAK ++   IYG
Sbjct: 121 GFVKPQITSGPLELDLAAKQVTLDQSPMEVTAFEYQILEYLMRHCHEVVAKQRLLDVIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 181 --DKEGDPNTIEVMVSRLRKKLTKGGLENPIATIRGQGYKFN 220


>gi|320449570|ref|YP_004201666.1| two-component response regulator [Thermus scotoductus SA-01]
 gi|320149739|gb|ADW21117.1| two-component response regulator [Thermus scotoductus SA-01]
          Length = 227

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 4/217 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A V         + G ++E   S           + D+  ++  L        
Sbjct: 4   ILLIEDDAEVARLVELELKEAGFTVEWAKSGMEGLVRHREKKPDLVVLDLGLPD--LDGA 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P++ ++   +++  +     G DD + KP H  E+LAR+     R K 
Sbjct: 62  EVARRIRATDDTPILVLTAQDAVERKVGLLSDGADDYLVKPFHPAELLARIQVQL-RHKE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + ++   R          L  +E  +L  LM+  G+   + +I   I+G  
Sbjct: 121 GSEVLSVGKLELYPKRRQVFFGETEVRLSPKEFDLLHLLMSRPGRVFPREEIEEKIWGKP 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               + NV++ H++ LR KLR    +  + + R LGY
Sbjct: 181 -LGRDSNVLDVHVANLRAKLREAGAYGYLRTVRGLGY 216


>gi|295693362|ref|YP_003601972.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031468|emb|CBL50947.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 238

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+    + L+ +  +D  AI   L+      L
Sbjct: 4   ILIIEDEKNLSRFVELELQHENYETVVENNGR--KGLEDALSQDFDAILLDLMLPDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+K+
Sbjct: 62  EIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAK 170
                          +   + + +  R      G+   L +RE  +L  L+ N+   V++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 182 DQLLNKIWGP-ESNIETNVVEVYVRYLRNKIDTPGQPSYIKTVRGTGYMV 230


>gi|255527989|ref|ZP_05394828.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186290|ref|ZP_06854694.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255508319|gb|EET84720.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049091|gb|EFG88521.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 235

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G  +    S   +E L+   +   +     ++       
Sbjct: 5   LLIVEDDEAIANILKEHLEKEGYEVNW--SSTGKEGLEDFKKYKFALAMVDIMLPEMDGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + IR  +  +P++ +S   +    +     G DD + KP    E+ ARV A  RR +
Sbjct: 63  TLCKNIRWINEDIPIMILSAKQTDMDKVKGLKLGADDYITKPFSLTEVSARVEAHLRRYR 122

Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +    +         + +  + +   + G+   +  +E  +L+ +  N  K  +K ++
Sbjct: 123 KMDKTLISNGTLKFKKDLIIIPEEKKVTINGQETQMTLKEFELLQLMAQNPNKVFSKEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +  ++   D     N V  HI +LR+K+ +       + +    GY  
Sbjct: 183 YHHVWDSIDLDGN-NTVTVHIKELREKIGDSSKNPIFIQTVWGTGYKF 229


>gi|206900228|ref|YP_002251690.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12]
 gi|206739331|gb|ACI18389.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12]
          Length = 220

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 111/225 (49%), Gaps = 16/225 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSL-EFEEWLQSSAREDVSAIEAFLIGK 56
            ++++D   +          +G  +    +G+++L E EE+     + DV  ++  L   
Sbjct: 3   ILVLEDDKKIAHLLELELTHEGHEVRVVGDGYDALIEAEEF-----KPDVVILDIMLP-- 55

Query: 57  GEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           G    E+ + +R  +  + +I ++    ++  ++ F+ G DD V KP    E+LAR+ A+
Sbjct: 56  GLSGKEVAKRLRDKYPDLGIIMLTALGDVKDKVEAFNLGADDYVVKPFSIEELLARIQAV 115

Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            RR +       +  I ++ D     V G+   L + E  +L  LM N    ++K +I S
Sbjct: 116 ARRKERKEEVISSEGIELYVDQHRVIVDGKEVDLSKTEFSLLYLLMKNENIVLSKEKILS 175

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +I+G +D+  E N+VE +I+ LRKKL +K     + + R +GYS 
Sbjct: 176 SIWGDYDDERE-NLVEVYINYLRKKLGDKG--KYIKTIRGIGYSF 217


>gi|218231365|ref|YP_002370039.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228903747|ref|ZP_04067865.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|218159322|gb|ACK59314.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228855893|gb|EEN00435.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 223

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LAAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 223


>gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 989

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L       L  +   ++E     +       +   D+  ++  L       +
Sbjct: 3   ILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLP--KLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R IR+++ Q+P++ ++   S        D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V++    E+G +R+     +      + PL  +E  +LE  + N  +  +   I   ++ 
Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             D   EE  V +HI  LR+KL+      D V++   +GY +
Sbjct: 181 YEDTPQEE-AVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRL 221



 Score = 90.0 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 7/130 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++     L    G+      N L+F E L++ A  D+  ++  L       
Sbjct: 398 ILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVA-PDMLILDVELPY--ING 454

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL R++R     S++P++ ++ +   +     F  G DD V+KPI   E++ R+     
Sbjct: 455 IELCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRIVNRLE 514

Query: 118 RLKVSNNRAE 127
           R+K+     +
Sbjct: 515 RMKLRQRVTQ 524


>gi|300936615|ref|ZP_07151519.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300458196|gb|EFK21689.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|323968214|gb|EGB63623.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323977760|gb|EGB72846.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324114498|gb|EGC08467.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325497900|gb|EGC95759.1| DNA-binding transcriptional regulator BaeR [Escherichia fergusonii
           ECD227]
 gi|327253212|gb|EGE64866.1| transcriptional regulatory protein baeR [Escherichia coli STEC_7v]
          Length = 240

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL         + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWEAD 235


>gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 223

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LAAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ R+  + RR+
Sbjct: 59  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I V    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 223


>gi|220927704|ref|YP_002504613.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998032|gb|ACL74633.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 225

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G  +E   + +  E +Q    ++   I   ++       
Sbjct: 4   ILIVDDEAGIRNIIKKYAVFEGHEVE--EAADGMEAIQVCREKEFDIIVMDVMMPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+  S+ P++ +S        +  F+ G+DD V KP   +E++ R+  I +R + 
Sbjct: 62  SACKEIKKFSKAPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRINVIVKRSRG 121

Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +++            + V   GR   +  E   +  +E  +  YL+ NRG  + + ++ +
Sbjct: 122 TSDTENKKEIFTFKGLTVDFTGRLVYIDNEKIDMSPKEYDLFFYLVKNRGIALTRERLIT 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G +D   ++  +++HI  LRK L +      + + R +GY  +
Sbjct: 182 DVWG-YDFFGDDRTLDTHIKLLRKSLGDY--SKNIVTLRGVGYRFE 224


>gi|319784560|ref|YP_004144036.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170448|gb|ADV13986.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 221

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +         D G  ++     E   +L  +   D   ++  L       + 
Sbjct: 4   LVVEDDKDLNRQISDALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQ--MDGIS 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +  R  R   ++P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR   
Sbjct: 62  VVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++    GP+R+ +     +V G    L   E R+L YLM + G+ V++T++   +Y  
Sbjct: 122 HASSELTCGPLRLDTKASKADVGGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  + +LRKK+    G D +++ R +GY +
Sbjct: 182 -DFDRDSNTIEVFVGRLRKKM----GIDMIETVRGMGYRM 216


>gi|261340522|ref|ZP_05968380.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC
           35316]
 gi|288317617|gb|EFC56555.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC
           35316]
          Length = 240

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAAGYAPTLINHGDHVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR + 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCRP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                      P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQVLDAESPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL         + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDADQSFIRAVYGVGYRWEAD 235


>gi|152974618|ref|YP_001374135.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023370|gb|ABS21140.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 220

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++            +   +  +  E ++   +     I   ++       
Sbjct: 5   ILVIEDDEEIQELIKQFLITQQYIVTVAS--DGLEGMKQFNKHPFDLILLDVMMPNLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+  IIR  S +P+I ++     Q  +  FD G+DD + KP      + RV A+ RR   
Sbjct: 63  EVANIIRNQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVLRRSYG 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++N      I V  D     V      L  +E  IL+ L+ N+ K + +  I   ++G
Sbjct: 123 ERTDNHLSFKEIHVDCDTYKVYVNKVEISLTAKEFEILQLLLKNKRKVITRENIVERVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   E  ++++HI  +RKKL        + + + +GY ID
Sbjct: 183 -YEPYGETRIIDTHIKNIRKKLNTP----YIKTVKGIGYKID 219


>gi|325578292|ref|ZP_08148427.1| two component response regulator [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160028|gb|EGC72157.1| two component response regulator [Haemophilus parainfluenzae ATCC
           33392]
          Length = 240

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+ +G        G  ++ F   +        A  D   ++  L       LE
Sbjct: 22  LLVEDDPLIGNGLQIGLTKSGFIVDWFTDGQSGLNALIGAPYDAVVLDLTLP--KLDGLE 79

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLK 120
           + +  R+++  VP++ ++   +L   +     G DD + KP    E++ R+ A+  RR  
Sbjct: 80  VLKQWRSNNQDVPVLILTARDTLDERIKGIQQGADDYLCKPFALAEVVVRLQALIRRRYG 139

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E G +++    R   +  +   L  RE ++LE  M N+ + +++  I   +   
Sbjct: 140 QVKPQIEHGNVKLDPAQRKAWLNEDEITLTGREYKLLELFMLNKERVLSRATIEEKL-SN 198

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 199 WDEELSSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 234


>gi|323485044|ref|ZP_08090397.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|323693581|ref|ZP_08107783.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673]
 gi|323401600|gb|EGA93945.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|323502356|gb|EGB18216.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673]
          Length = 225

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 100/224 (44%), Gaps = 5/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +  G   L   +  S++  N+         S   DV  ++  +  K    +
Sbjct: 3   ILIAEDEVELAKGLKFLLEKNKFSVDTVNNGADALDYFHSTDYDVIVLDIMMPKK--NGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+   IR   + VP++ ++    ++  +   ++G DD + KP   RE +ARV A+ RR  
Sbjct: 61  EVLSQIRSEGAAVPVLMLTARSEIEDRVAGLEAGADDYLPKPFATREFIARVKALARRNA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G +R+  +  +   + E   L  +E +++E    +     +   +   ++G
Sbjct: 121 GYADTVLSLGNVRLDCNRYELSCKEETVRLNNKEYQLMELFFQHPHFVFSTDHLMDKVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + +VV ++I  +RKKL++      + + R  GYS++ N
Sbjct: 181 K-DSEADIDVVWTYIGFIRKKLKHIGADIEIKTVRGAGYSLEGN 223


>gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 222

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+    + DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEQPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRV 118

Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           K    VS+     G + +    R   V+G+   L  RE  + +  ++N  +   + ++  
Sbjct: 119 KKEVAVSHEVIRAGELVICPKERKVHVEGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G F+       V+  + +LRKKL N    + + +   +GY +D 
Sbjct: 179 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLDC 222


>gi|311032119|ref|ZP_07710209.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 236

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D    +   +G   ++  ++ E           D+  ++  L       
Sbjct: 6   ILMVDDEQSIIDMMKLVLTKEGFQQVDTCSTGEMALHKLKHHAYDLILLDIMLPD--MTG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ + IR  +  P+  +S   S    L  F  G DD + KP +  E++AR+     R  
Sbjct: 64  YEICQAIRKTTDAPIFFLSAKTSDLDKLTGFAHGGDDYITKPFNPLEVVARIKVQLSRYL 123

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  E G   +     +  V GE   L  +   +L +   N  +   K Q++ 
Sbjct: 124 KTTTSKKEDVLEFGRFNLNLQSAELTVLGESVVLSGQLYHLLVFFCKNPNRIFTKEQLYY 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++   +  V+EN V  HI KLR+K+       + + + R +GY +
Sbjct: 184 HVW-KDNILVDENTVMVHIRKLREKIEENPSKPEYIKTVRGIGYKL 228


>gi|308068960|ref|YP_003870565.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858239|gb|ADM70027.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 237

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          +G ++E   +         +   D+  ++  L       +E
Sbjct: 6   LVIDDEKKISRLLQLELSHEGYAVEIAQTGREGLEKALAGTWDIIILDVMLPE--INGVE 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + + IR   +  P+I ++   +    +   D G +D + KP    E+LAR+ A  R    
Sbjct: 64  VLKQIRKVDNHTPVIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRHQME 123

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                        +R +   + +    R    +G    L  +E  +L YLM ++ + + +
Sbjct: 124 PIATVLQEEDKPPSRLQVDSLVLERKTRLVMREGNRIELTPKEFDLLLYLMEHKNQVLQR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   ++G FD   + NVV+ +I  +RKK+ +      + + R +GY I
Sbjct: 184 DQMIQDVWG-FDFVGDTNVVDVYIRYVRKKIDHGYKKKLIKTVRGVGYCI 232


>gi|116490257|ref|YP_809801.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|118586509|ref|ZP_01543953.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290889640|ref|ZP_06552729.1| hypothetical protein AWRIB429_0119 [Oenococcus oeni AWRIB429]
 gi|116090982|gb|ABJ56136.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|118433073|gb|EAV39795.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290480637|gb|EFD89272.1| hypothetical protein AWRIB429_0119 [Oenococcus oeni AWRIB429]
          Length = 231

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ D   A+  +     + FN  + E +    A  D+   +  L       L
Sbjct: 8   ILLIEDDKILNDDITAMLSEIAEVKQVFNGADGE-YEAVEAPYDLIVSDLMLPE--MNGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R AH + P++ ++   S+   +  F+ G DD + KP H  E+LARV A+ RR  
Sbjct: 65  DIIKEMRDAHIETPVLILTAKDSVDDKVKGFEVGADDYLTKPFHREELLARVEALLRRAG 124

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +     E   G +++    R   V  +   L  +E  IL YL  N+   + K QIF  ++
Sbjct: 125 IDTEEKEINIGNLKIHLSNRTVTVGNQNVQLVGKEYDILVYLAKNKNIIITKDQIFDRVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           GL D     +VV  +++ LR+KL +    D + + R +G+ ++
Sbjct: 185 GL-DSDTTTSVVNIYLNNLRRKLESVGKNDLIKTLRNVGFILE 226


>gi|327405853|ref|YP_004346691.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327321361|gb|AEA45853.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 227

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++    +  N+           + D+  ++  L   G   +
Sbjct: 4   ILIIEDDPQISSIVQKGLTEENFETKTANNGLKGLDEFHFWKPDLIILDIMLP--GLNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++   IR  SQVP++ ++   + +      DSG DD + KP    E+ ARV ++ RR++ 
Sbjct: 62  QVCSKIRETSQVPILMLTALGTPENVALGLDSGADDYLPKPFKFIELNARVRSLLRRIEN 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S+       + +  D +     G +  L   E R+L   M +  K  ++  I   +
Sbjct: 122 QVTASSTLFSFSDLVIDDDRKTVIRNGHLITLTSTEYRLLLLFMMSPKKVFSRIDILEEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G+ D     NVV+ +++ LRKKL        + +   +GY +
Sbjct: 182 WGI-DFESGTNVVDVYVNYLRKKLMQFGDSKLIHTVIGMGYVM 223


>gi|311109256|ref|YP_003982109.1| transcriptional activator protein IrlR 6 [Achromobacter
           xylosoxidans A8]
 gi|310763945|gb|ADP19394.1| transcriptional activator protein IrlR 6 [Achromobacter
           xylosoxidans A8]
          Length = 232

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D               G +++         +L      D   ++  L   G+   
Sbjct: 3   LLVVEDEPKTASHIKRGLTGLGFTVDLSGDGSEGLFLAIEHDYDAIILDVMLP--GQDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L R +RA    P++ +S   S+   +     G DD + KP    E+ AR+ A+ RR   
Sbjct: 61  ALLRQLRARKPTPVLMLSARGSVDERVKGLRQGADDYLGKPFSFIELAARIQALLRRRVG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   + G ++V    R     G+   L  +E  +L  L  ++G+ ++K  I   I+
Sbjct: 121 TGGDSTWLQVGDLQVDLLARRATRAGQRLNLTAKEFALLSLLARHQGEILSKMMISEQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  + +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAMRRLRLKVDAPYDTKLLHTVRGMGYLLE 222


>gi|302551904|ref|ZP_07304246.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469522|gb|EFL32615.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 232

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  V  +   L   G   LE
Sbjct: 12  LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGMQGGVDLVVLDLGLPGMDGLE 69

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +R     +P++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 70  VARRLRGEGHAIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 130 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 189

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 190 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 230


>gi|255023092|ref|ZP_05295078.1| regulatory protein VanR [Listeria monocytogenes FSL J1-208]
          Length = 231

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            ++ DD   + D       ++G ++  + + +  E   L    +  +  ++  +      
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTI--YQAYDGAEVWRLVQEKQPTLVILDIMMPE--MN 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R++R +    P++ +S        +    +G DD + KP +  E+  RV AI RR
Sbjct: 61  GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++       VS ++   GPI V        V G+   L   E  IL  L +  G+  +  
Sbjct: 121 MQQMSQAEPVSQDKVIIGPILVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            IF  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 181 YIFEKIWQEK-ALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 230


>gi|89072828|ref|ZP_01159385.1| Response regulator [Photobacterium sp. SKA34]
 gi|89051350|gb|EAR56805.1| Response regulator [Photobacterium sp. SKA34]
          Length = 219

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  IA     G   E         +  +S   D   ++  L       +
Sbjct: 3   ILVVEDEVTLGEQIIAGLEHSGWVAELSCDGIDALYRATSEPWDAIVLDLGLP--KLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + IR  +   P++ +S    L   +D  ++G DD + KP    E++ARV A  RR  
Sbjct: 61  TVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       +G++  L   E ++L YLM N  K +++T++   IY 
Sbjct: 121 GNASPVIQAGNLSLDTRTSKVTWEGQIIDLTALEFKVLSYLMHNTDKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++R+K+    G D + + R LGY I+
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRRKI----GNDVIKTVRGLGYRIN 217


>gi|125973056|ref|YP_001036966.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125713281|gb|ABN51773.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 223

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 90/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       D+G  ++               + D+  ++  L        
Sbjct: 4   ILIVEDDKDIVNNLTEYLRDEGFDVDSAGGQNEAINKMDKNKYDLLLVDISLKD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +    R ++ +P+I +S        +   + G DD + KP   RE+L+R+    RR   
Sbjct: 62  AVCSAARENNDIPVIFLSASDDEYNIVTGLEIGADDYIVKPFRPRELLSRIRKALRRNGK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    E   IRV +        G    L   E R+    + N+G  ++++++   I+ + 
Sbjct: 122 AGAVIEHDNIRVDTVRGIVTKNGSEIFLSALEYRLFLVFLNNKGAVLSRSRLLEEIWNIA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ +       + + R LGY +
Sbjct: 182 GEYVNDNTLTVYIKRLREKIEDDPQNPTFIKTVRGLGYKV 221


>gi|319936946|ref|ZP_08011356.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
 gi|319807882|gb|EFW04461.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
          Length = 219

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 104/220 (47%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L++D  L++   +  F   G ++ E  +  E    L  +   D+  ++  +   G    
Sbjct: 4   LLVEDEKLIRLFIVEYFSKQGAAVVEASDGYEALSLLDET--YDIVLLDIMMP--GIDGY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IR  S +P++ IS     +  L  ++ G DD ++KP     + A+  A+ +RL  
Sbjct: 60  EVCKLIRQKSDIPILFISALSEDENKLKGYELGADDFISKPFTPSLLYAKCNALLKRLNK 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N   + G I +  D  +  V      L  +E  IL Y + N+ K +++ Q+   ++G +
Sbjct: 120 GNESLDVGMIHIDEDTHEVFVNDVEIQLSHKEYLILIYFIENKRKILSRDQLLDHVWG-Y 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   ++ +V++++ KLRKKL        + +   +GY  D
Sbjct: 179 DYYGDQRIVDTYVKKLRKKLLEA--SSYIQTVVKIGYMFD 216


>gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 223

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V  +   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL N    + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLDC 223


>gi|163759086|ref|ZP_02166172.1| probable transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162283490|gb|EDQ33775.1| probable transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 228

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +    ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIVEDDKDLNRQLAEALEEQSYVVDRAYDGEEGHFLGDTEPYDAVILDIGLPE--MDGV 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    RA  + +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  TVLEKWRADGRAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+R+ +      V G    L   E R+L YLM +  + V++T++   +Y 
Sbjct: 121 GHASSEIVCGPVRLDTAASKASVDGTTLKLTSHEFRLLSYLMHHMDQVVSRTELVEHMYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G + +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKI----GVELIETVRGLGYRM 216


>gi|254787196|ref|YP_003074625.1| BaeR family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237684514|gb|ACR11778.1| transcriptional regulatory protein BaeR [Teredinibacter turnerae
           T7901]
          Length = 232

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D A +           G   E   N LE E WL S+   D+  ++  L   G+  L
Sbjct: 6   LIVEDEAELALLMRDYLLAAGFHCEIIGNGLEVERWL-STNTADIILLDLMLP--GKNGL 62

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R +R       +P+I ++        L   + G DD V KP   REI+ARV A+ RR
Sbjct: 63  DICRELRTQAQFKTLPIIMVTAKVEEIDRLLGLELGADDYVCKPFSPREIVARVKAVLRR 122

Query: 119 LKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           ++    + +   +  +++  + +   + G +  L   E  + + L   +G+  ++  I  
Sbjct: 123 VQQPQEQLQDSASQAVQLHENSQQVSISGSMIELTTIEFCLFKLLYTEQGRIFSRQYIMD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            IY  +   V +  V+SHI KLRKK+     G + + S    GY  +
Sbjct: 183 NIYSDY-RVVSDRTVDSHIKKLRKKMQEADPGLELIHSVYGAGYKYE 228


>gi|227824929|ref|ZP_03989761.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226905428|gb|EEH91346.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 234

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +    ++ F D+  ++  + + +  E L+    +    +   ++  G    
Sbjct: 6   ILIADDDEKLLSVLLSYFKDEQFTV--YLARDGGEALKRLKEDHPDIMVLDIMMPGIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R  R  + +P+I +S        L     G DD V KP H RE++ARV +  RR + 
Sbjct: 64  EVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRG 123

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E   + +  +  +   +     L   E  +L+ L +   +  ++ Q+    
Sbjct: 124 EVLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLLEKA 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G       E  +++HI  LRKKL  +      + +   +GY  
Sbjct: 184 MGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKF 227


>gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 226

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPE--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR  S+VP+I ++   ++   +   D+G DD + KP    E+LAR+    ++   
Sbjct: 62  EVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + +  +   +
Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G ++   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 182 CG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223


>gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
 gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
          Length = 240

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      L   +G   E   + +  E L    RE+V  I   ++      L
Sbjct: 6   ILVVDDNKEIVYSISELLKYEGY--ETLKAYDGMEALDIMERENVDLILLDVMMPRLNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R  S++P+I +S        +     G DD + KP +  E++ARV A  RR + 
Sbjct: 64  SALMKLREKSRIPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRRYRA 123

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       ++   G + +    R   V+GE   L   E +ILE LMA+ G+     
Sbjct: 124 WSGGETEKKKDPDQIVNGGLVLDKKQRVIFVEGEEVHLTATEYKILELLMAHPGQVFPAE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           QI+  ++    +   EN V  HI  +R+K+  +      V     +GY ++
Sbjct: 184 QIYENVWQETADYTVENTVMVHIRHIREKVEIDAKKPRYVKVVWGIGYKME 234


>gi|186473343|ref|YP_001860685.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195675|gb|ACC73639.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 226

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V         + G  ++  ++      L      D   ++  L G G   L
Sbjct: 3   ILLVEDNQQVAGFLKKGLLETGHVVDWADNGRDGMALAIGETYDAIVLDRMLPG-GIDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA    VP++ +S    +   +    +G DD V KP    E++AR+ A+ RR +
Sbjct: 62  SIVAALRASGNKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRSQ 121

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +N     +   + +    R     G+   L  RE ++LEYLM +  + V +T +   I+
Sbjct: 122 DNNFETTLKVADLCIDLLSRKVMRAGKAIVLKPREFKLLEYLMRHAEQVVTRTMLLENIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++   + NV++ H+SKLR+K+        + + R  GY +
Sbjct: 182 -EYNFDPQTNVIDVHVSKLRQKIDIGFERSLLRTIRNAGYML 222


>gi|320160793|ref|YP_004174017.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994646|dbj|BAJ63417.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 239

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD    +          G  +   ++ E    L SS + D+  ++  +        
Sbjct: 6   ILVVDDEPRYQHLLRVNLEAAGYLVSTASNGEEALELISSRQPDLVILDVMMPH--LDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S VP+I ++     Q  +   + G DD V KP    E++ARV A+ RR + 
Sbjct: 64  STCERIRQFSSVPIIMLTAKGEEQDRVKGLNVGADDYVVKPFSATELIARVRAVLRRAQT 123

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +      G +++     +     +   L   E R+L     N G+ ++  ++ +A
Sbjct: 124 AEAVTQNRYFTHGNLKIDFARAEVWKDDKPVFLSATEYRLLIQFAHNMGRVLSPEELLTA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
           ++G   +  ++ ++   I++LR+KL +       + ++  LGY
Sbjct: 184 VWGTQYKE-DKEILWVSIARLRQKLEDNPHNPVHIVTRSGLGY 225


>gi|298248013|ref|ZP_06971818.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550672|gb|EFH84538.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 225

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +             +++     E    + ++   D+  ++  L        
Sbjct: 3   ILVVEDDPRLGPSLKKGLEKHHYAVDLALDGEDAVLMGTTTPYDLIVLDVLLPR--LNGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R H +  P++ ++    L   +   D+G DD + KP   RE+ AR+ A+ RR  
Sbjct: 61  EVCSQLRNHRRTMPILLLTALGELDHRVTGLDTGADDYLTKPFAFRELEARIRALLRRES 120

Query: 121 VSNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   A     I + +   +      + PL  +E  +LEYLM +  + +++T I   ++ 
Sbjct: 121 TTKTAALCFLDIMLDTRTHEARRGERMIPLNNKEYALLEYLMRHPRQVLSRTMIAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E +  NV++ +I  LR+KL      D + + R  GY +
Sbjct: 181 CETEHL-SNVIDVYIRYLRRKLCENHEPDVIHTIRGAGYQL 220


>gi|237730523|ref|ZP_04561004.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2]
 gi|226906062|gb|EEH91980.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2]
          Length = 227

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     +       + G  ++  ++      L  +   D+  ++  L        +
Sbjct: 4   LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIMLPDV--NGWD 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR   
Sbjct: 62  IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++ 
Sbjct: 122 VIVESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 182 M-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|226303939|ref|YP_002763897.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183054|dbj|BAH31158.1| probable OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 231

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 104/224 (46%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A V +         G   +   +++    L S  ++  +A+   +   G   +
Sbjct: 7   ILIVDDDAKVLNSLERGLRLSGF--DTATAVDGRSALSSVNKQCPAALVLDVNMPGLDGV 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA  ++VP+  +S   S+   +   ++G DD + KP    E++AR+ A+ RR  
Sbjct: 65  GVVTALRAIGNEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTT 124

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    ++    GP+ V   G    + G    L +RE  +L  L  + G  +++ Q+   
Sbjct: 125 RATPSVDHPITVGPLTVDLRGHRAHIDGGRIELTKREFDLLSVLAEHAGVVLSRAQLLRL 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D A + NVV+  ++ LRKKL        + + R +G+ +
Sbjct: 185 VWG-YDFAADTNVVDVFVTYLRKKLEVDGAPRVIHTVRGVGFVL 227


>gi|89096971|ref|ZP_01169862.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
 gi|89088351|gb|EAR67461.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
          Length = 254

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 96/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   + +  + L    G    +     E       ++  DV  ++  +       
Sbjct: 33  ILLAEDDEYLGELIVHLLKKKGFGKADWVMEGEDAYEYAKASYYDVLILDWMMPN--GDG 90

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           + + R +R       ++ ++   ++   ++  ++G DD + KP    E+ AR+ A+ RR 
Sbjct: 91  ISVCRRLRREGYSGAILMLTARDAVSDRVEGLEAGADDYLIKPFEIDELAARLKALSRRM 150

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +  +  +   + +        + GE   L  RE ++LE L+ N+G+ + +  I   I
Sbjct: 151 LAPLQEDVIQWKSLELNRTSHTLFLNGEEIFLTPREYQLLEMLLRNKGQVLTREMILDRI 210

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+ +  V    +++ I  LRKK+        +++ R +GY I+
Sbjct: 211 WGI-ESDVSMKTIDATIKLLRKKIDKHGTNSLIETIRGVGYKIE 253


>gi|119716281|ref|YP_923246.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536942|gb|ABL81559.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 250

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 18/234 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++   +      G  +    S           + D+  ++  L   G   +E
Sbjct: 17  LVVEDDEDIRALIVYTLETQGFEVFAVGSGLEGVAAVRDRQPDLITLDLGLP--GIDGIE 74

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IR  S   ++ I+        L   ++G DD + KP   RE+ ARV A++RR +  
Sbjct: 75  ACRRIREISDAYVVMITARDDEIDRLLGLETGADDFIAKPFSARELKARVNAMFRRPRTG 134

Query: 123 -------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        +     GP+RV  +GR     G+   L R E  +L  LM    +  +
Sbjct: 135 GGAQRPDAPAEDPHELLVHGPLRVDVEGRRAFRDGQELVLTRTEFDLLTELMRAPSRVWS 194

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221
           +  +  +++G  D A + ++VE H+  LR+KL          + + R +GY ++
Sbjct: 195 REALLRSVWGT-DWASDTHLVEVHVGNLRRKLAAGTDGSTRFIRTVRGVGYRME 247


>gi|229028363|ref|ZP_04184487.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732911|gb|EEL83769.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 229

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  + +  D+   ++   + E   +L      D   ++  +        
Sbjct: 9   LLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPE--MDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR    + P++ ++   SL+  +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        I +F   +D +V G+   L  ++  +LEYL+ N GK + + QIF  ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      +VE ++  LRKKL        + + R +GY +
Sbjct: 186 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 226


>gi|189463287|ref|ZP_03012072.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136]
 gi|189430017|gb|EDU99001.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136]
          Length = 246

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 104/228 (45%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +++   S E    L    + ++  ++  +        
Sbjct: 24  ILVVDDEEDLCEILKFNLEMEGYTVDTAYSAEEALKL-DITQYNLLLLDVMMGE--ISGF 80

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R+++A+     +P+I I+   +   T+  F+ G DD ++KP   RE++ RV A+ RR
Sbjct: 81  KMARMLKANKDTAEIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 140

Query: 119 LKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                     + +   + +    +   + GE   L ++E  IL  L+ N+G+  ++  I 
Sbjct: 141 TAGVQIKEEEQLQYKGLVINIPQKKVTIDGEETSLTKKEFEILLLLLQNQGRVFSREDIL 200

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + ++   +  V +  ++ +I++LRKK+ +      + ++   GY  + 
Sbjct: 201 AKVWN-DEVYVLDRTIDVNITRLRKKIGSYG--KYIVTRLGYGYCFEC 245


>gi|150391442|ref|YP_001321491.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149951304|gb|ABR49832.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D       +   ++  F + +  E L+   +E++  +   ++        
Sbjct: 5   LVVDDEREITDAIEVYLRNQNYNV--FKAYDGAEALEIFEKEEIHLVLMDVMMPRLDGTS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR +S VP+I +S        +   + G DD + KP +  E+LARV +  RR    
Sbjct: 63  ATIKIRENSTVPIIILSAKSEDVDKIWGLNVGADDYITKPFNPMELLARVNSSLRRYTSY 122

Query: 123 NN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +N         + G I +  + +   V GE   +   E +IL  LM +  +  +  +I+ 
Sbjct: 123 SNVTTTKEDVIKIGGIELRDESKAVFVDGEAVRITPLEYKILYLLMNHPNRVFSIEEIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++       +   V  HI ++R+K+  N      +     +GY  +
Sbjct: 183 KVWNEPAYNPD--TVTVHIRRIREKIEINPGEPKYLKVVWGVGYKFE 227


>gi|300854564|ref|YP_003779548.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434679|gb|ADK14446.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 238

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            +LIDD   +      +   +G     F +    E   L  + + D+  ++  +      
Sbjct: 10  ILLIDDEVELLKLLETVLKKEGFR-RIFKAKNGTEGIKLCKTEKPDIVVLDIMMPD--MD 66

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
             E+ + IR  S VP+I +S        +     G DD V KP   +E+  R+ A  RR 
Sbjct: 67  GFEVCKNIRNFSFVPVIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRN 126

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 + +   +   G I +  +  +     +   L  +E  +L Y+  N  + + K  
Sbjct: 127 IYIKNEISMKKEKISFGDIIIDLEKGEVSKSDKNVVLTPKEYHLLCYMAQNANQILTKQM 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           I   ++   +    +N +  HI KLR+KL +       + + + LGY +
Sbjct: 187 ICDEVWN-DNYEGYDNTIMVHIRKLRQKLEDNPSSPKYIVTAKGLGYKL 234


>gi|299531523|ref|ZP_07044929.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298720486|gb|EFI61437.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 227

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          +G+++   +SL   +  Q  +R     +   +       L+
Sbjct: 4   LLLEDDPAIARTICYALEREGIAVT--HSLLIADARQQWSRTAFDVLLMDVGLPDGNGLD 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +R A S VP++ +S        +   + G DD + KP   RE+LAR  A+ RR + 
Sbjct: 62  WCRELRSAGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRRSRQ 121

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               A       +++   G+   +  +   L RRE ++L+ L+   G+ +++  +   I+
Sbjct: 122 FQPTAPAQLARALQIDEQGQRALIHSKALDLTRREYQLLQSLVNAAGRILSRDALLEQIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           GL D    +  V++HI  LR KLR +L   + + + R LGYS++
Sbjct: 182 GL-DSESTDRTVDTHIKTLRAKLRERLPDQELIVTHRGLGYSLN 224


>gi|182679197|ref|YP_001833343.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635080|gb|ACB95854.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 227

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D        +  F + G   +                 DV  ++  L       L
Sbjct: 3   ILIVEDDPEASQYMVKAFREAGHLADHAGDGLAGYQKACEENYDVLIVDRMLP--KLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L   +RA   + P++ +S    +   +    SG DD + KP    E+LARV A+ RR  
Sbjct: 61  SLIGGLRAQKIETPVLILSALGQVDDRVKGLRSGGDDYLPKPYAFSELLARVEALARRKP 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +          G+   L  RE R+LEYLM + G+ V +T +   +
Sbjct: 121 PGTAEETIYRIGGLELDRLAHKLTRDGKEIILQPREFRLLEYLMKHAGQVVTRTMLLEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR K+        + + R +GY I
Sbjct: 181 WD-YHFDPQTNVIDVHISRLRSKIDKGFDPPLLQTIRGIGYMI 222


>gi|168177977|ref|ZP_02612641.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670984|gb|EDT82958.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 227

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 102/225 (45%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   + D  ++    DG  ++G F + + ++ L      D+  ++  L    E   
Sbjct: 6   LVVEDEISINDILVSALRADGYKVKGVFLAKDAKDAL-DFFHPDLVLLDINLPD--ESGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R I     +P+I ++    +   +   + G DD + KP + +E+L RV    RR+  
Sbjct: 63  ELCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVSK 122

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +++   I      +V  +GR      +   L  +E  +LE+ + NR    ++  + +
Sbjct: 123 YKEKSDEEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD   E   V+ H+ +LR KL  +     +D+   +GY +
Sbjct: 183 KVWG-FDYEGEVRTVDVHVRRLRSKLDKENSASIIDTAFGIGYVM 226


>gi|163815559|ref|ZP_02206932.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759]
 gi|158449196|gb|EDP26191.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759]
          Length = 229

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +           G S+  + +   +E +     +D+  +   ++      +
Sbjct: 4   ILICDDEKDIVSAIEIYLKTAGYSV--YKAYNGKEAVDMVNAKDIQLVLMDVMMPQMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR +S VP+I ++        +   + G DD V KP +  E+LARV +  RR   
Sbjct: 62  TAMAKIRENSNVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRRYMQ 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   ++   G I +    +   + GEV PL   E  IL+ LM N GK  +  +I+ 
Sbjct: 122 LGGGETPKDKLVIGGIELDDKSKQVTLDGEVMPLTPTEYDILKLLMQNVGKVFSTKEIYR 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           A++   D    E  V  HI  LR+K+  N      +      GY ++ 
Sbjct: 182 AVW-KEDPMGAEGSVAVHIRHLREKIEINPSDPRYIKVIWGRGYKMEV 228


>gi|312959066|ref|ZP_07773585.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311286836|gb|EFQ65398.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 225

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G +++     E  E L  +   D + I   ++  G    
Sbjct: 3   ILIVEDEEKTADYLHRGLTEQGYTVDVAR--EGVEGLHLALENDYAVIVLDVMLPGLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  GVLRALRARKQTPVIMLTARERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGG 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     + +    R     G    L  +E  +L  L   +G+ ++KT I   ++ +
Sbjct: 121 HEPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 -NFDSDANVVEVAIKRLRAKLDGPFEHKLLHTIRGMGYVLE 220


>gi|310828961|ref|YP_003961318.1| hypothetical protein ELI_3395 [Eubacterium limosum KIST612]
 gi|308740695|gb|ADO38355.1| hypothetical protein ELI_3395 [Eubacterium limosum KIST612]
          Length = 228

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 88/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             LI+D   +    + L   +G  +    + +         + D++ I+  L        
Sbjct: 4   IFLIEDDQAIAKNLMLLLQSEGFIVTHAATRKEATDTLVDNKFDLALIDISLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   ++    +P+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEVKEVQNIPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIGTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    E   ++V +     +  G    L   E R+L   + N    + + ++   ++   
Sbjct: 122 SAATFEVCGLQVDTASGVVKKDGSEVFLSALEYRLLLMFVNNPKSIITRDRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ +  G    + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIEDDPGKPKIIRTVRGTGYRL 221


>gi|291295420|ref|YP_003506818.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470379|gb|ADD27798.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 219

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +    S    E L      D+   +  L    E   
Sbjct: 3   LLIVEDEPSLASTLKESLSAQGFQVTLAASRSEAEALVWEQPFDLLLFDVMLPEGPEAGF 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R      P++ ++   +L   +   + G DD + KP    E++AR+ A+ RR +
Sbjct: 63  ELAQALRESGFHQPILFLTAREALPDRVRGLEWG-DDYLPKPFALAELVARLKALGRRGE 121

Query: 121 VSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +     +  P + +  + R    QGE+  L  +E  +LE L  N+G+   + +I   I+G
Sbjct: 122 IKPQVLQISPQVELALEHRQVRRQGELVRLTAKEYLVLELLALNKGRVFTREEILERIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              EA + N+++ ++  LRK+L    G D +++ R +GY +
Sbjct: 182 PGFEA-DSNLIDVYVKNLRKRL----GEDVIETVRGVGYRL 217


>gi|160947044|gb|ABX54691.1| response regulator [Enterococcus faecalis]
          Length = 231

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   + +       ++G  +  F   + E++L   ARE +S     ++       
Sbjct: 5   IVVVDDEQEIANLITTFLENEGFQVTTF--YKGEDFLTYIARESISLAILDVMLPDIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR +   P++ ++        +     G DD + KP +  E++ARV    RR++ 
Sbjct: 63  RILQEIRKNFYFPVLMLTAKEENMDKIMGLTLGADDYITKPFNPIEVVARVKTQLRRVQK 122

Query: 122 SNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N + E           + +  D     +  +   +   E  +L YL  ++G  V+  ++
Sbjct: 123 YNRKVENESVIEFNKDGLTLKKDSHQVFLFDKEITVTPIEFNLLLYLFEHQGVVVSSEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F A++         N + +HI++LR+KL         + +   +GY I+
Sbjct: 183 FEAVWKEK-YLENNNTIMAHIARLREKLDEQPRKPKFIKTVWGVGYIIE 230


>gi|226304543|ref|YP_002764501.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183658|dbj|BAH31762.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 237

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++   +               +  ++  L   G   +E
Sbjct: 15  LVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLP--GFDGME 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ +S        +    +G DD V KP   RE++ARV A+ RR + S
Sbjct: 73  VCRRIRTFSDAYILMLSARGEESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRAS 132

Query: 123 NNRAETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   +  P    + +    R   V   +  L   E  +L  L +      ++ +I ++++
Sbjct: 133 SLLPKVLPTPPGLDIDVLARTVRVDDNLVDLTPTEFTLLSALASRPDAAWSRAEIIASVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G      ++++V+ H+  LR+KL  +      + + R +GYS+
Sbjct: 193 GSS-WFGDQHIVDVHVRGLRRKLGDDATDPRFIRTVRGVGYSL 234


>gi|160895572|ref|YP_001561154.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361156|gb|ABX32769.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 241

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +     A    DG+     +  +    L    R D+  ++  L   G   
Sbjct: 13  LVLVVEDEPAIASILTAYLERDGLRSRMASDGQEALQLFRLLRPDLVLLDIHLP--GMDG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R IR  SQ P+I ++        L     G DD V KP +  E++ARV A+ RR +
Sbjct: 71  IDVLRAIRDDSQTPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQ 130

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKT 171
              N        GPI + ++     V          PL   E R+L  L A   +  +++
Sbjct: 131 ARKNPAPAPIRVGPIEIDAEAHSAVVYDNEGRALPLPLTLTEFRLLACLAAQPRRCFSRS 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      L +    E V++SH+SKLR+KL+       +++ R +GY +
Sbjct: 191 HLIEHC--LPESDALERVIDSHLSKLRRKLQLAGQEGLIETVRGIGYRL 237


>gi|237799359|ref|ZP_04587820.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237805509|ref|ZP_04592213.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237806273|ref|ZP_04592977.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022215|gb|EGI02272.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331026616|gb|EGI06671.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331027387|gb|EGI07442.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 229

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +      G+ G  ++          L    R D+  ++  L   G    
Sbjct: 3   ILLIEDDTKTGEYLKKGLGESGYRVDWTQHGADGLHLALENRYDLIVLDVMLP--GIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++  ++RA   VP++ ++    LQ  +   + G DD + KP    E+L R+  I RR + 
Sbjct: 61  QIIEVLRARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R    Q +V  L  +E  +L  L+   G  +++ QI S ++ +
Sbjct: 121 READHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVMSRAQIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+        + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRSKIDLPYPVKLIHTVRGIGYVCEV 221


>gi|126701214|ref|YP_001090111.1| two-component response regulator [Clostridium difficile 630]
 gi|254977214|ref|ZP_05273686.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094542|ref|ZP_05324020.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102800|ref|ZP_05331777.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308621|ref|ZP_05352792.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255316295|ref|ZP_05357878.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518956|ref|ZP_05386632.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255652135|ref|ZP_05399037.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260685108|ref|YP_003216393.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688766|ref|YP_003219900.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521867|ref|ZP_07408214.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115252651|emb|CAJ70494.1| Two-component response regulator, CheY family [Clostridium
           difficile]
 gi|260211271|emb|CBA66824.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214783|emb|CBE07502.1| two-component response regulator [Clostridium difficile R20291]
          Length = 228

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 88/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G  +   ++        +  + D++ I+  L        
Sbjct: 4   IFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNKFDLALIDISLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TICTEIKEKQDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  E   + V +     +  G    L   E R+L   ++N    + + ++   ++   
Sbjct: 122 FGSTFEICGLYVDTATGVVKKNGNEVFLSALEYRLLLVFISNPKSIITRVRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ +       + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIEDDPSSPQIILTVRGTGYRL 221


>gi|319935317|ref|ZP_08009755.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1]
 gi|319809725|gb|EFW06126.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1]
          Length = 228

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A        +E  +       +      D+  ++  L       +E
Sbjct: 5   LIVEDDIALAKSLKAALEVKDYQIEVADCYNLAIRMFQHMTFDILVVDIQLPD--GDGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR  SQ+P++ ++   + +  +   +SG DD + KP   +E+ AR+ A+ RR +  
Sbjct: 63  LCEYIRKQSQLPILFLTANDNEEMLVKGLNSGGDDYMTKPFRIKELYARLQALLRRSQSL 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            ++   G +++    R+  ++ +   L   +  IL+ LM ++ + + ++Q+  AI    +
Sbjct: 123 QDKMIVGNLQIDLQRREVFIEKQEVHLSTIDFDILKMLMIHKNQVLTRSQLLEAI-DQEN 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             VE+N +  H+ +LR KL    G   +++ R +GY ++
Sbjct: 182 NFVEDNTLSVHVKRLRDKLGIYHGHSYIETVRGIGYRLN 220


>gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 219

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +        G +G +++  +         +    D+  ++  L   G    
Sbjct: 3   LLIVEDERRLARSLALGLGAEGYAVDVAHDGTEGLHRATEGGYDLIVLDIMLP--GMNGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
            +   +RA     P++ ++         +  D+G DD + KP  +  + ARV A+  RR 
Sbjct: 61  RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G +R+ +  R   + GE  PL  +E  +LE+L+   G+ V+K  I   ++ 
Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F  + + N+VE ++S LR+KL    G   + + R  GY ++
Sbjct: 181 -FAYSGDPNIVEVYVSTLRRKL----GAGLIRTVRGAGYLLE 217


>gi|254558966|ref|YP_003066061.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens DM4]
 gi|254266244|emb|CAX22002.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens DM4]
          Length = 220

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ DG  A  G  G ++E   +    +   +++      ++  L       L
Sbjct: 3   ILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALAASGFGAVVLDLMLPD--GSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +R      P++ ++   ++   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRGLRERGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELAARIRAVVRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   E   IR+        + GE  P+ RRE  +L  LM       +K ++   +YG
Sbjct: 121 GRASACLEHAGIRLDPAELTVTLHGEPVPVSRREFMVLTALMERPNVLRSKAELEERLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E VE N VE H+  LR K+    G   +++ R LGY +
Sbjct: 181 -WQEEVESNTVEVHVHNLRAKI----GKHAIETVRGLGYRM 216


>gi|146294933|ref|YP_001185357.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145566623|gb|ABP77558.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 231

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        D   S++  +  E   +       D + I+  L       +
Sbjct: 3   LLLVEDDIELQTNLKQHLLDAHYSIDVASDGEEGLFQALECNYDAAIIDVGLP--KLDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R      P++ ++   S Q  ++  D+G DD + KP H +E++AR+ A+ RR  
Sbjct: 61  SLIRSVRQKERDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSA 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     GP  + +   +     E+  L   E ++ E+LM ++G+  +KT +   IY 
Sbjct: 121 GKASPLVYNGPFSLNTSSLEIRKGDELINLSGSEYKLFEFLMLHQGEVKSKTVLTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +LRKKL     ++ +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|325845377|ref|ZP_08168676.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Turicibacter sp. HGF1]
 gi|325488592|gb|EGC91002.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Turicibacter sp. HGF1]
          Length = 230

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G  ++  +  E           DV  ++  L  K     
Sbjct: 5   ILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKK--DGF 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + +RA +    ++ +S        +   D G DD + KP   RE+++++ AI RR  
Sbjct: 63  AVCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKE 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + + N    G I++ +   +  V G+V     +E  +LE+L+ ++G+ +++  +  
Sbjct: 123 VLSSEKNKNYLGYGSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+   +  +V+ HI K+R+KL++      + + R +GY ++
Sbjct: 183 RLWG-FEYDGDTRIVDVHIFKIREKLKDYGIK--IKTIRGIGYMLE 225


>gi|322806654|emb|CBZ04223.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 226

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   N+      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPE--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+   +++   
Sbjct: 62  EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAFKKRIV 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++   +    G + +               L  RE  +L+ LM N+   + ++ +   +
Sbjct: 122 TVRKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|228983852|ref|ZP_04144047.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775901|gb|EEM24272.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 235

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 82/219 (37%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 21  ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPT--MDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGY 218
           +   E+  V+SHI  LR KLR       D + +   +GY
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGY 235


>gi|225405674|ref|ZP_03760863.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme
           DSM 15981]
 gi|225042775|gb|EEG53021.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme
           DSM 15981]
          Length = 238

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 92/232 (39%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++G        G  +  F + +  E L+   +E+V      ++      +
Sbjct: 8   ILLVEDDKEIREGVEIFLRSQGYQV--FQAADGLEGLKLLEQEEVQLAIVDVMMPRMDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD + KP    E+LARV +  RR + 
Sbjct: 66  TMVVKLREMYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSQLRRYRR 125

Query: 122 SNNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
              R              G + +  D  +  V  +   L   E +IL  L+ N G+    
Sbjct: 126 FMERLNRQQPENSKIHRLGGLEINEDTVEVTVDDKPVKLTPIEYKILLLLVQNPGRVFPA 185

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +I+  ++   + A+  + V  HI  +R+K+  N      V     +GY I+
Sbjct: 186 DEIYERVWN--ERAINTDTVMVHIRNIREKIEVNPKEPKYVKVVWGVGYKIE 235


>gi|254490397|ref|ZP_05103586.1| heavy metal response regulator subfamily [Methylophaga thiooxidans
           DMS010]
 gi|224464530|gb|EEF80790.1| heavy metal response regulator subfamily [Methylophaga thiooxydans
           DMS010]
          Length = 226

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  +   ++         +   DV  ++  L        
Sbjct: 3   LLVVEDERKAGEFIRQGLTEAGFLVTWMSNGLDGYHQAMTETFDVIILDVMLPD--IDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A +Q P+I ++   S+   +   + G DD + KP    E+LAR+ ++ RR  
Sbjct: 61  RILKSLREAGNQTPVIFLTARDSVTDRVKGLELGADDYLVKPFAFVELLARIRSLLRRGN 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      +   + +    R     G+   L ++E  +LE  +  +G+ + ++ I S ++
Sbjct: 121 STAIIEELKVADLVLDIPSRKVTRAGKKITLSQKEFLLLELFIRRQGEVLPRSIIASEVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  + +LR K+ ++     + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAVRRLRAKIDDEFEQKLIHTVRGMGYKLE 222


>gi|159898827|ref|YP_001545074.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891866|gb|ABX04946.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 225

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 95/214 (44%), Gaps = 15/214 (7%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L + G+      DG+             L    +  +  ++  L       L + + IR 
Sbjct: 22  LEQAGFTTYLASDGL---------AGLALVQQHQPSLVVLDLMLP--KLDGLAVFKTIRQ 70

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAE 127
            S  P+I ++   S +  +   + G DD V KP + RE++ARV A+ RR +   ++   +
Sbjct: 71  TSNTPIIMVTARSSDEERIHGLELGADDYVGKPFNARELVARVRAVLRRSQPIQASQMLK 130

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GPI +  +     V  +   L + +  +L   M +  + +++ Q+  A++   D A  +
Sbjct: 131 RGPIELDLEQHSCTVNQQPVELSKIQLALLATFMRHPNQILSREQLLEAVF-AGDYAGFD 189

Query: 188 NVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +++HI++LR+++  ++     + +   LGY  
Sbjct: 190 RSLDAHIARLRQRIEHDRTNPQYIVTVYGLGYKF 223


>gi|313617375|gb|EFR89783.1| regulatory protein VanR [Listeria innocua FSL S4-378]
          Length = 231

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            ++ DD   + D       ++G ++  + + +  E   L    +  +  ++  +      
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTI--YQAYDGAEVWRLVQEKQPTLVILDIMMPE--MN 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R++R +    P++ +S        +    +G DD + KP +  E+  RV AI RR
Sbjct: 61  GLEVCRLMRKNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++       VS ++   GPI V        V  +   L   E  IL  L +  G+  +  
Sbjct: 121 MQQMSQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            IF  I+           V  HIS LR KLR+   G + + +   +GY I+
Sbjct: 181 YIFEKIWQEK-ALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230


>gi|262045124|ref|ZP_06018153.1| transcriptional activator protein Irlr [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259037516|gb|EEW38758.1| transcriptional activator protein Irlr [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 232

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  ++  D+  ++  L        
Sbjct: 8   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDVMLPDV--NGW 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++RA  + +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 66  DIVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R          L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 126 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 186 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 228


>gi|152969364|ref|YP_001334473.1| DNA-binding transcriptional regulator BasR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238893828|ref|YP_002918562.1| DNA-binding transcriptional regulator BasR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330014488|ref|ZP_08307928.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
 gi|150954213|gb|ABR76243.1| response regulator in two-component regulatory system with BasS
           (OmpR family) [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238546144|dbj|BAH62495.1| OmpR family response regulator in two-component regulatory system
           with BasS [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328533015|gb|EGF59789.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
          Length = 223

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D AL+  G I     +G   +G ++        +S    +  ++  L    E  L
Sbjct: 3   ILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNHYSLIVLDLGLPD--EDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
               R+ R     P++ ++   +L+  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N    G +R+    R   +      L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR+K+    G   + + R  GY +  N
Sbjct: 180 SWDNEPATNTLEVHIHNLREKI----GKSRIRTVRGFGYMLANN 219


>gi|159038626|ref|YP_001537879.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157917461|gb|ABV98888.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 230

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +    DG  +                  DV  ++  L   G   +E
Sbjct: 6   LVVDDERSLAKVVASYLARDGYQVRCVFDGPAALDAAREDEPDVVVLDLMLP--GLDGVE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   +I ++        L     G DD + KP   RE++ARVAA+ RR +  
Sbjct: 64  VCRRLRTFSDCYVIMLTARTEEADKLTGLGVGADDYLTKPFSPRELVARVAAMQRRPRQP 123

Query: 123 NNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             R        GP+ V    R+  + G   PL R E  +L  L A     +++ ++ +A+
Sbjct: 124 RGRPEPAPRRFGPLEVDVPAREARLDGAPVPLTRTEFDLLAVLSARPNVVLSRAELITAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +G      +E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 184 WGEG-WVGDEHLVDVHIGHLRRKLGDAPARPRFILTVRGIGYRM 226


>gi|83945607|ref|ZP_00957953.1| two-component transcriptional regulator, winged helix family
           protein [Oceanicaulis alexandrii HTCC2633]
 gi|83850973|gb|EAP88832.1| two-component transcriptional regulator, winged helix family
           protein [Oceanicaulis alexandrii HTCC2633]
          Length = 223

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V      +  + G  ++  +  E    +      DV  ++  +  +    L
Sbjct: 3   ILIVEDDREVAGNIAKMLRESGHVVDMAHDGEDGLAMARDGAFDVLIVDRMMPRR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  I+R      P + +S    +   +    +G DD + KP    E+ ARV A+ RR  
Sbjct: 61  SMISILREEGDKTPALVLSALGEVDDRVAGLTAGGDDYLVKPYAPSELKARVDALARRRD 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R + G + +    R  +   E   L  RE R+LE+LM + G+ V +T +   ++
Sbjct: 121 PEALKTRLQVGDLEMDLLARTVKRGEEAIQLQPREFRLLEFLMRHAGQVVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIDKPFDTSMLHTVRGAGYRL 221


>gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075465|gb|ADJ64864.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 220

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 12/222 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  ++ DG   +    G ++   N+    + L       V  ++  L   G    E
Sbjct: 4   LLVEDDPVLTDGLSRVLNSHGFTVHTVNN--GNDALSQRFNAAVLVLDIGLP--GIDGFE 59

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  +  P++ ++   ++   +   + G DD + KP    E++AR+ A+ RR   
Sbjct: 60  VLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAP 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI--YG 179
              +   G + + +  +  ++ G    L  RE  +LEYLM +  + V+K QI  A+  +G
Sbjct: 120 QPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E    N VE ++S++R K+ +      + + R  GY ++
Sbjct: 180 ---EDFTINAVEVYVSRIRLKIADSG--VAIRTIRGFGYMLE 216


>gi|255281501|ref|ZP_05346056.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255267989|gb|EET61194.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 229

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D A +     ++   +G+ + + F+  E    L+     D+  ++  L   G   
Sbjct: 4   ILISEDDADINHLIRSICEKNGLQTAQAFSGTEALLRLE-LESFDMIILDLMLP--GMTG 60

Query: 61  LELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            EL + IRA     +P++ +S   SL   +     G DD + KP    E+LAR+ A  RR
Sbjct: 61  EELLKRIRAEKQPDIPVLVLSAKSSLADKVQLLTGGADDYMTKPFEPEELLARITACLRR 120

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  K + +      + +    R   V G+   L   E  IL  L     K  ++  
Sbjct: 121 AQRMPAAKPAADDISYKKLCICPAARRATVNGQELVLTPHEYDILLLLARELEKVFSRET 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++  ++       E+N V  H+S LRKK+       + + +   +G+ +
Sbjct: 181 LYERVW-QGGYYGEDNTVNVHVSNLRKKIAACDADNEYIKTVWGIGFKM 228


>gi|303250662|ref|ZP_07336859.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307246173|ref|ZP_07528255.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307252889|ref|ZP_07534778.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307255154|ref|ZP_07536972.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257309|ref|ZP_07539079.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|307259591|ref|ZP_07541316.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|302650650|gb|EFL80809.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306853108|gb|EFM85331.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306859678|gb|EFM91702.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306862027|gb|EFM94003.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306864159|gb|EFM96072.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306866527|gb|EFM98390.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 213

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 29  FNSLEFEEWLQS----SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPS 83
           +  LE E++  +    S +  +  ++  L G+ G + ++  +     +Q+P++ ++   S
Sbjct: 11  YQVLEAEDYQSAVKKLSEKPKLILLDWMLPGRSGIQFIQYLKKSEETAQIPILMLTARSS 70

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ 143
               +   ++G DD V KP   + ++AR+ ++ RR   +N+      + +  + +    Q
Sbjct: 71  EDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDDLILDQNAKRVTFQ 130

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   L   E ++L + M +  K  ++ Q+   ++G  D  VE+  V+S+I +LRK L  
Sbjct: 131 KKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWGN-DIYVEDRTVDSYIRRLRKSLEP 189

Query: 204 KLGFDPVDSKRFLGYSI 220
                 V + R  GY  
Sbjct: 190 CGFERYVQTVRGSGYRF 206


>gi|255305635|ref|ZP_05349807.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 229

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +  S++   +++    ++         I   L+       
Sbjct: 3   ILLVEDDRNIREMVYDFLISENYSVK--TAIDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR+ S VP+I  +   S    +   + G DD + KP    E+LAR+ A  RR  V
Sbjct: 61  EVLKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATV 120

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++         +   + +          G    L   E  I++ L  N+G+  +K Q++
Sbjct: 121 YSSSRNSQDMVIQYKDLIINISKYVVSKNGIDLNLTHTEFEIVKLLATNQGRAFSKEQLY 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           + I+        ENV+ +HI++LR KL + +   + + +   +GY ++
Sbjct: 181 NTIWKEP-YYGNENVLNTHINRLRNKLSDGIEKNNYIKTLWGIGYKME 227


>gi|209885691|ref|YP_002289548.1| transcriptional activator protein CopR [Oligotropha carboxidovorans
           OM5]
 gi|209873887|gb|ACI93683.1| transcriptional activator protein CopR [Oligotropha carboxidovorans
           OM5]
          Length = 226

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +     F + G   E     E    L  S   DV  ++  L  +    L
Sbjct: 3   LLIIEDDRESAEYLAKAFREAGHVAELARDGEEGLALAQSGGYDVLVVDRMLPKR--DGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SVIGTLRETGDTTPALILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G + +       +  G    L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 GPSEETSYRVGDLELDRLSHQVKRGGTEITLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIDKGQEVPLLHTIRGAGYMI 221


>gi|126652337|ref|ZP_01724513.1| two-component response regulator [Bacillus sp. B14905]
 gi|126590912|gb|EAZ85025.1| two-component response regulator [Bacillus sp. B14905]
          Length = 224

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 98/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++        +G +    +  +    +  S   D+  ++  +        
Sbjct: 4   ILVADDDANIRELVCLFLRKEGFATVEADDGKEALSIYHSTPVDLVVLDIMMPT--MDGW 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A++++PL+ ++        +  F+ G DD + KP    E+  RV A+ +R +
Sbjct: 62  TLCKELRRANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYR 121

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   + G I +           +   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 122 IGYSQTIKLGAITLDRQTYKIMTGTDTITLPLKEFELLYKLAETPGQVYTREQLIDQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + D A +   ++ HI +LR++      F  +++ R LGY ++ +
Sbjct: 182 I-DYAGDNRTIDVHIKRLRERFAMIADF-HIETIRGLGYRLEVD 223


>gi|289648792|ref|ZP_06480135.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. aesculi str. 2250]
          Length = 220

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G +L+     +    L +   E    +   L        
Sbjct: 3   LLLVEDDRAIGQGIRVALNTEGYTLDWLE--DGLSALHALRSEPFDLLLLDLGLPRMDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +    QG   P+   E ++L  LM   GK V + ++ + +YG
Sbjct: 121 GRAQPLLEDAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E  I  LRKKL      + + + R +GY ++
Sbjct: 181 WQDK-VESNTLEVLIHNLRKKL----STELIRTVRGVGYLLE 217


>gi|271970052|ref|YP_003344248.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513227|gb|ACZ91505.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 234

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++   A     G  +                R D+  ++  L        
Sbjct: 11  LLVVDDEPNIRELLSASLRRSGFEVVTAADGREAVHFAERIRPDLVVLDVMLPD--MDGF 68

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R    Q+P++ ++   +    +       DD V KP    E+LAR+ A+ RR +
Sbjct: 69  AVAGRLREMGGQMPVVFLTARDATDDKVAGLRV-ADDYVTKPFSLEEVLARIRAVLRRTR 127

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R + G + +  +       G    L   E ++L Y M N G+ ++K QI   +
Sbjct: 128 GDLDLPTRLQVGDLELDEEAHQVWRSGTPVRLSPTEFKLLHYFMVNTGRVLSKAQILDHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   +  VVES++S LR+K+ +      + + R +GY +
Sbjct: 188 WN-YDFGGDAGVVESYVSYLRRKV-DVSEPRLIHTLRGVGYVL 228


>gi|218699328|ref|YP_002406957.1| DNA-binding transcriptional regulator BaeR [Escherichia coli IAI39]
 gi|218369314|emb|CAR17072.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli IAI39]
          Length = 240

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL         + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWEAD 235


>gi|116690638|ref|YP_836261.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|206561168|ref|YP_002231933.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|116648727|gb|ABK09368.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|198037210|emb|CAR53131.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       DG +++     +    L +   E    +   L       +
Sbjct: 3   ILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDA--ALTALGGETYDLLLLDLGLPKRDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +R     +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRGRGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G D + + R LGY +
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYMV 216


>gi|298247520|ref|ZP_06971325.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550179|gb|EFH84045.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 223

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   V +            ++  ++ +    L      D+  ++  L        
Sbjct: 3   ILIAEDDLFVGESMKTGLERQRYVIDLVDNGKQALALGGLEPYDLVILDVLLPD--MDGF 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R   Q  P++ ++    +   ++  D G DD + KP   RE+ ARV A+ RR  
Sbjct: 61  DICRTLREQGQTMPILFLTALDGVDYRVNGLDIGGDDYLTKPFAFRELEARVRALLRREG 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S  ++ +   I + +             L R+E  +LE+LM N  + +++T I   I+ 
Sbjct: 121 PSKTSQLKFLDITLDTINHQVWRGERKINLTRKEYLLLEFLMHNPRQVISRTMIAEHIW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D     NV++ ++  +R+KL  +   D + + R  GY +
Sbjct: 180 ESDAENLSNVIDVYVRYVRRKLCEQGESDVIHTIRGFGYQL 220


>gi|297201515|ref|ZP_06918912.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147907|gb|EFH28783.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 237

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 89/236 (37%), Gaps = 21/236 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   ++         +G  +                  DV  ++  +   G   L+
Sbjct: 2   LLAEDDRAIRHALERALTLEGYQVTAVADGVEALAQAHKTPPDVLVLDVMMP--GIDGLQ 59

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R++RA     P++ ++     Q  +   D+G DD V KP    E+ AR+ A+ RR   
Sbjct: 60  VCRVLRAEGDRTPILMLTALVETQDRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSP 119

Query: 120 ---------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                          ++   R E   +R+    R          L R E  +LE L+ N 
Sbjct: 120 DGMAPVGAAPKAVAPELPQGRIEAAGLRMDIQARRAWRGTRELELTRTEFELLELLVRNA 179

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  + I+  I+G +D       +  ++  LR+KL        + + R +GY +
Sbjct: 180 GIVLDHSTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDEPGAPQLIHTVRGVGYVL 234


>gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 234

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 96/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   V         + G ++                   +  ++  L       L
Sbjct: 10  ILVADDEPDVLQLVSTNLKNAGYNVLKAEDGLSALEQARQTSPALIVLDLMLPE--MSGL 67

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ ++++   A +++P+I ++        +   + G DD + KP   RE++ RV ++ RR
Sbjct: 68  EVCKVLKRETATNRIPVIMLTAKAEEVDRIVGLELGADDYMTKPFSPRELVLRVKSVLRR 127

Query: 119 LKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++R   G I++     +  + G+V      E ++L  L+  RG+   +  + +
Sbjct: 128 ASNGAEVSDRLVLGDIQIDRTRHEVTIGGKVVDFTATEFKLLALLIERRGRVQDRETLLN 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G ++  ++   V++HI +LR+KL        +++ R  GY +
Sbjct: 188 DVWG-YETVIDTRTVDTHIRRLREKLGKSGS--YIETIRGFGYRV 229


>gi|30021338|ref|NP_832969.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|118478527|ref|YP_895678.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196042921|ref|ZP_03110160.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206968886|ref|ZP_03229841.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218233754|ref|YP_002367955.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228921982|ref|ZP_04085293.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228953540|ref|ZP_04115583.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229070715|ref|ZP_04203945.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229080448|ref|ZP_04212969.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229097707|ref|ZP_04228662.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|229103767|ref|ZP_04234447.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|229116716|ref|ZP_04246100.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|229128513|ref|ZP_04257491.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|229145816|ref|ZP_04274196.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229151413|ref|ZP_04279616.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|229179503|ref|ZP_04306856.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229185458|ref|ZP_04312640.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|296503743|ref|YP_003665443.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29896892|gb|AAP10170.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|118417752|gb|ABK86171.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196026405|gb|EDX65073.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206735927|gb|EDZ53085.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218161711|gb|ACK61703.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228598046|gb|EEK55684.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228604004|gb|EEK61472.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228631956|gb|EEK88582.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228637647|gb|EEK94097.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228654706|gb|EEL10566.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228666548|gb|EEL22006.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228679643|gb|EEL33840.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228685652|gb|EEL39575.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228702750|gb|EEL55215.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228712385|gb|EEL64330.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228806124|gb|EEM52700.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228837590|gb|EEM82920.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296324795|gb|ADH07723.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIMMPFV--DGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|319796195|ref|YP_004157835.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315598658|gb|ADU39724.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 257

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 92/230 (40%), Gaps = 17/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +       F   G +LE             + + D + ++  L        
Sbjct: 26  ILLIDDDEHLAAPLTTYFARFGCTLESAVRPSEGLAKLRAGQYDAAILDVMLPE--MDGF 83

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++    +   +   + G DD V KP   RE++ARV  I RR + 
Sbjct: 84  ALCREIRKESDIPIVMLTARGEVTDRVVGLELGADDYVPKPFEPRELVARVQTILRRQRS 143

Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +   A               + +  D R    QGE   L   E  +L  L A  GK  ++
Sbjct: 144 TPAVANGHGNNGTQLRVFDGLSIDLDRRQVLRQGERVELTGTEFELLALLAAEPGKVFSR 203

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I + + G  +  +    V+  +S+LRKKL      D + + R  GY++
Sbjct: 204 DDILNRLRG-HEAELYTRAVDIVVSRLRKKLEP---LDCIKTLRNAGYAL 249


>gi|268319761|ref|YP_003293417.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|262398136|emb|CAX67150.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 236

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 97/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +   ++          +   A +    +   L    +  +
Sbjct: 4   ILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKKAPDSYDIVTLDLNLPKKDGM 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA S  +P+I ++   S    +     G D+ V KP     ++AR+ A+YRR  
Sbjct: 64  EVAKEIRAISLSIPIIMLTARDSESDQILGLGIGADEYVTKPFSPLALIARIKALYRRSH 123

Query: 121 VSNN---------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAK 170
           +  +            T  +++  D R+     +V   L  +E  +L  +     +  ++
Sbjct: 124 LEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVFSR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   ++G ++   EE  V++HI KLR+KL  K G   V +   +GY  D
Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232


>gi|269119755|ref|YP_003307932.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268613633|gb|ACZ08001.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 217

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 92/221 (41%), Gaps = 12/221 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++    +    +G  +      E    L      D+  ++  +  K     
Sbjct: 3   ILIVEDEERIRKVVRSFLVKNGYIVREAADGEEGLDLFYEWNPDLVLLDVMMPKK--DGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R I++    P++ ++     +  +   + G DD + KP   + +  R+  +      
Sbjct: 61  EVCRAIKSEKTTPVLMLTAKTQEEDEIRGLEIGADDYIRKPFSLKILELRLKNLL----- 115

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G  R   + ++  +  ++  LP +E  +L YL  N  K  ++ QI + ++ L 
Sbjct: 116 GDEIYTIGNFRFLKNEKNVYLNEKIVDLPPKEYDLLFYLAKNHSKIFSREQILNNVWDLL 175

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            E+ +   V++HI  LRKK+    G + + + +  GY  + 
Sbjct: 176 CES-DPRTVDTHIKNLRKKI----GHEYITTVKGFGYKFEV 211


>gi|229829767|ref|ZP_04455836.1| hypothetical protein GCWU000342_01864 [Shuttleworthia satelles DSM
           14600]
 gi|229791756|gb|EEP27870.1| hypothetical protein GCWU000342_01864 [Shuttleworthia satelles DSM
           14600]
          Length = 229

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +           S++                 D+  ++  L   G    E
Sbjct: 5   LIIEDERSIAELEKDYLELSEFSVDIETDGAAGLKKALEGDYDIFILDLMLP--GADGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR     P++ +S        +     G DD V KP    E++ARV A   R    
Sbjct: 63  ICQKIREVKDRPILMVSARKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYSRL 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                + N+  E   +++    R   + GE      +E  +L +L  +     +K ++F 
Sbjct: 123 VGASPIKNDCLEIRGLKIDKSDRRVWINGEERTFTAKEYELLLFLAEHPNHVFSKDELFR 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+ +     E   V  HI ++R+K+  +      +++   +GY  
Sbjct: 183 EIWNMS-SNGEVATVTVHIKRIREKIEMDSSKPQYIETIWGVGYRF 227


>gi|163813849|ref|ZP_02205243.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759]
 gi|158450719|gb|EDP27714.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759]
          Length = 223

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD   + D   + F       E   +    E LQ  AR  D+  ++  +       
Sbjct: 5   LLIVDDEPGIVDMMASYFSSQY---EVLTAYCGNEALQKLARQPDLILLDINMPD--IDG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L + IR     P++ ++        +  F +G DD + KP    E+ ARVAA  RR +
Sbjct: 60  LTLCQKIRELITCPILFLTARVESADKIIGFQAGADDYIIKPFDLDELGARVAAHLRREQ 119

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N+A     G + +    R   V GE   L +RE  I+E L  N G+   + +I+  +
Sbjct: 120 RHRNKATIRFFGELTIDYSARTVTVAGEPVALSKREFDIVELLSLNAGQVFDRERIYETV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +GL D     + V  HI K+R KL        +D+    GY   WN
Sbjct: 180 WGL-DGEGNSDTVMEHIRKIRAKLAACTLHSYIDTVWGCGYR--WN 222


>gi|154484485|ref|ZP_02026933.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC
           27560]
 gi|149734333|gb|EDM50250.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC
           27560]
          Length = 234

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G ++    + +  E ++   +ED+  +   ++      +
Sbjct: 8   ILVCDDDKDIVEAIDIYLSKEGYNV--IKAYDGMEAMEILKKEDIQLLLIDVMMPRLDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  S +P+I +S        +   D G DD + KP +  E++ARV +  RR   
Sbjct: 66  RATLKIREKSSIPIIILSAKSEDSDKIIGLDVGADDYITKPFNPLELIARVKSQIRRYTR 125

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  +N    G + +  + ++ +V GE+  L   E  IL +L+ N G+     QI+
Sbjct: 126 LGTIAEPKSNVYSVGGLEIDDECKEVKVDGEIVKLTPFEYNILLFLVKNPGRVFTIDQIY 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            A++     A + N V  HI  +R+K+  N      +     +GY I+
Sbjct: 186 EAVWNEEAVAAD-NTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIE 232


>gi|329941091|ref|ZP_08290370.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299622|gb|EGG43521.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 225

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  V  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGMQGGVDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +R     VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRSEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|325292356|ref|YP_004278220.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325060209|gb|ADY63900.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 252

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++      DV  I+  L  +    L
Sbjct: 30  ILVIEDDLEAAAYMTKAFREVGIVADHASDGESGLFMGCENSYDVMVIDRMLPRR--DGL 87

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R    + P++ +S    +   +    +G DD + KP    E+LAR+  + RR  
Sbjct: 88  SVISELRRRGIETPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARIEVLGRRKG 147

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +     D    G+   L  RE R+LEYLM N G+ V +T +   ++
Sbjct: 148 KPEQDMVYRVGDLELDRLSHDVRRGGKEILLQPREFRLLEYLMKNAGQVVTRTMLLENVW 207

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY +
Sbjct: 208 D-YHFDPQTNVIDVHVSRLRSKIEKDFEKPLLKTIRGAGYMM 248


>gi|320010070|gb|ADW04920.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 237

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 99/237 (41%), Gaps = 27/237 (11%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           + ++D  ++++         G ++    + LE  E  ++  R D++ ++  +   G   +
Sbjct: 7   LFVEDDDVIREATQLALERVGFTVTAVPDGLEGLEAFRAD-RPDIALLDVMVP--GLDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   
Sbjct: 64  SLCRRIRDESTVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGH 123

Query: 122 SNNR------------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
           +                        G + + ++G +   QG    L   E R+L      
Sbjct: 124 ATGTGPGAPAATGGPQDGAGGVLVFGDVEIDTEGMEVRRQGAHVGLTPTEMRLLLEFSTA 183

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G  +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 184 PGTVLSRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 235


>gi|229153423|ref|ZP_04281601.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228630027|gb|EEK86678.1| DNA-binding response regulator [Bacillus cereus m1550]
          Length = 224

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEV--LAAADGREALERWNEGPDVLILDVMLPDT--DG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 120 KKTEVAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 180 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 224


>gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 245

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALF-GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   +              +    N LE  E  +     D+  ++  +       
Sbjct: 21  ILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERET-YDLIFLDVMMPFV--DG 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +    IRA S VP++ I+        +  F  G D+ + KP    E +ARV AI RR+ 
Sbjct: 78  FDACERIRAKSDVPIVIITAREGTDDIVQGFRRGADEYITKPFKVAEFVARVEAILRRVD 137

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +   R      + G + + +      V+G+   L   E  +L +L AN G+   +  +F 
Sbjct: 138 MQKARTAPTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFR 197

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G ++   E N+V+  + +LR+K+         + + R +GY ++
Sbjct: 198 EVWG-YEYVGETNLVDVCVRRLREKVEVEPSKPKIITTVRGVGYKLE 243


>gi|218441450|ref|YP_002379779.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174178|gb|ACK72911.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 614

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L +        D   +++     +    L   ++ D+  ++  L       +
Sbjct: 3   ILLVEDDPLTRTVLTQTLKDHHYTVDVATDGQTAATLTQVSQYDLLLLDVVLPS--LDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R    Q P+I ++   S    +   D+G DD + KP++   ++AR+ A++RR K
Sbjct: 61  SLCQQLRFQGFQEPIILLTARDSSTDQIIGLDAGADDYIVKPVNLETLMARIRALFRRKK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +S++      ++V  +  +    G    L  +E  +LE  + N  +  ++  I   ++ 
Sbjct: 121 NISSSVIHWENLQVNLNNCEVNSHGNSIHLTAKEYSLLELFLMNSQRIFSRRVILEKLWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D   EE  V +HI  LR+KL+     DP+++   LGY +
Sbjct: 181 LADSPGEE-TVSTHIKCLRQKLKAAGVPDPIETVYGLGYRL 220



 Score = 75.7 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD + +    + L    G+ +             ++   D+  ++  +       L+L
Sbjct: 493 IVDDDSAILSQIVDLLTPWGIEVITLKYSHNFWQELTTNNPDLLILDLEIPNF--NGLDL 550

Query: 64  PRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +++R       +P+I +S Y         F +G DD +NK    +E++ R+    RRLK
Sbjct: 551 CKVVRHDPKWQNLPIIFLSIYNEENIIQQMFLAGADDYLNKTYEPQELVNRI---LRRLK 607

Query: 121 VSNN 124
               
Sbjct: 608 SKEQ 611



 Score = 51.4 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 35/102 (34%), Gaps = 1/102 (0%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++IDD   + +          + +E   +L+    +      ++  ++       E  
Sbjct: 364 LILIIDDDLALAERIRLEALAWNLRVEIATNLQIAREIIIQLSPNIILLDLNFETAREDG 423

Query: 61  LELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101
             L   + +    +P++  +   SL   +     G    ++K
Sbjct: 424 FSLLEELGKTRPNLPIVVFTGRESLSDRVKVSRLGAKAFLHK 465


>gi|116625746|ref|YP_827902.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228908|gb|ABJ87617.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 235

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--AREDVSAIEAFLIGKGEK 59
            ++IDD   ++D  + +   +G       + +  +  + +   + D+  ++  L   G  
Sbjct: 15  ILVIDDDESLRDTIVVMLEQEGFR--AVQAGDGRDGFEKAITTKPDLVLVDLRLP--GMS 70

Query: 60  VLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             E+ + +RA     P+I +S        +   + G DD V KP   RE+ AR+ A+ RR
Sbjct: 71  GTEICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRR 130

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +        + V  + R  + +GE   L   E  +L Y + N  + + +  I +++
Sbjct: 131 ASTDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNSV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G ++       V++H+ KLR+KL  +        +   +GY  
Sbjct: 191 WG-YEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRF 233


>gi|33239608|ref|NP_874550.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237133|gb|AAP99202.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 247

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD A ++          G  +    +         +   D+  ++  +       
Sbjct: 10  IILVADDEASIRRILETRLSMIGYQVVTACNGNEALQQFHNCEPDLVVLDVMMP--KLDG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++
Sbjct: 68  YGVIQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVE 127

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++   +    R+ ++ R      E   L   E  +LE L++  G+  ++ +I
Sbjct: 128 KEQIAGLPNSGVIQVAAFRIDTNRRKVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEI 187

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
              ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 188 LKEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|167633009|ref|ZP_02391335.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229601325|ref|YP_002866373.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|167531821|gb|EDR94486.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229265733|gb|ACQ47370.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 230

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 5   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GMDGF 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 63  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 122

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 123 VHDEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 183 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 224


>gi|116493445|ref|YP_805180.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103595|gb|ABJ68738.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 229

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++G   +  +N  E    L++    D+S +   ++      
Sbjct: 3   ILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALSKLRTD--PDISLMILDIMMPEMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R +R  S +P++ +S        +    +G DD V KP +  E++ARV ++ RR +
Sbjct: 61  MQVVREVRKDSSLPILMLSAKTDDMDKIKGLLTGADDYVAKPFNPLEVMARVKSLLRRSE 120

Query: 121 V-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                      + G + + SD  +   + G+   L   E  IL  L ++  +  +  +IF
Sbjct: 121 KDMTADEPEILDIGSLIINSDSHEVRTLAGKDVQLTALEFGILYLLASHPNRVFSADEIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             ++   +  +    V  H+S LR K+     G   +++   +GY +
Sbjct: 181 ERVWQQ-ESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYKV 226


>gi|320335876|ref|YP_004172587.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319757165|gb|ADV68922.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 221

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       D G  ++  ++             D+  ++  L        
Sbjct: 6   ILVIEDDHDIANVLRMDLADAGFEVKHADAAMTGLIKAREDNPDLILLDLGLPDF--DGG 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R +S VP+I ++   ++   +     G DD V KP H  E+LAR+    R  + 
Sbjct: 64  DVVQRLRKNSTVPVIVLTARDTVDEKVRLLSLGADDYVIKPFHPDELLARIKVQLR--QR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G +++    R    QGE   L  +E  IL  LM   G+  ++ +I   I+   
Sbjct: 122 GSETLTLGDLQLDPQKRLVLFQGEELRLSPKEFDILALLMRQPGRVYSRQEIGQEIWQGR 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 NVV+ H++ LR KLR+  G+  + + R +GY++
Sbjct: 182 LPEG-SNVVDVHMANLRAKLRDLEGYGLLRTVRGVGYAL 219


>gi|153955660|ref|YP_001396425.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856034|ref|YP_002473156.1| hypothetical protein CKR_2691 [Clostridium kluyveri NBRC 12016]
 gi|146348518|gb|EDK35054.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569758|dbj|BAH07742.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 239

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            +LIDD   +      +   +G     F +L+  +   L  + + D+  ++  +      
Sbjct: 10  ILLIDDEIELLKLMETVLRKEGFK-RIFKALKGTDGINLCKNEKPDIVVLDVMMED--MD 66

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
             E+ R IR  S VP+I +S        +     G DD V KP   +E++ R+ A  RR 
Sbjct: 67  GFEVCRAIREFSYVPVIFLSARGDHIDKILALGLGADDYVTKPFSPKEVVFRIKAHLRRN 126

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 L +   +   G + +     +    G+   L  +E  +L Y+  N  + + K  
Sbjct: 127 IYIKNELTMKKEKICFGDLIIDFKKGEVLKSGKNITLTPKEYHLLCYMTQNANQILTKEM 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++   +    +N +  H+ KLR+KL  N      + + + LGY  +
Sbjct: 187 ICDEVWN-DNYEGYDNTIMVHMRKLRQKLESNPSKPQYIVTVKGLGYKFN 235


>gi|77458928|ref|YP_348434.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382931|gb|ABA74444.1| putative two-component response regulator Winged helix family
           [Pseudomonas fluorescens Pf0-1]
          Length = 241

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G  ++     E      + AR D   ++  L G+G   L
Sbjct: 9   LLIVDDDGEILSLLKKFFVQHGYQVDVAAHGEAMWAAIAQARPDTIILDLMLPGEG--GL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L + +RA   +P+I ++    L   +   + G DD + KP   +E+LARV A+ RR   
Sbjct: 67  SLCQKVRAQMGIPIIMLTAMAELSDRIVGLELGADDYLTKPFAPQELLARVRALQRRVGE 126

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 + S          +    R+    +G + P+   E  +L  L+ +  + + + Q
Sbjct: 127 NAPSGAEPSRPVMAFAGWHLDITCRELRSPEGVMIPMSAGEFDLLLVLLEHPQRILTREQ 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +    +G   +A +   ++  IS+LR+K+       D + + R  GY  
Sbjct: 187 LIDLTHGQGHDAYD-RSIDVQISRLRRKIEPDSKRPDLIRTVRNGGYMF 234


>gi|83941435|ref|ZP_00953897.1| two-component response regulator [Sulfitobacter sp. EE-36]
 gi|83847255|gb|EAP85130.1| two-component response regulator [Sulfitobacter sp. EE-36]
          Length = 223

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A           ++G +++            +S   DV  ++  L       L
Sbjct: 3   LLVVEDDATTGTYIARGLREEGHTVDLVAEGREGLIQATSGAYDVLIVDRMLPE--IDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R      P++ ++   S+   +   ++G DD + KP    E+ ARV A+ RR +
Sbjct: 61  TLVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQ 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +    R     G+   L  RE  +LE+L+  +G+   +T +  A++
Sbjct: 121 AMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 181 DIS-FDPMTNVVETHISRLRAKVDKPFDRELIQTVRGAGYRID 222


>gi|257063309|ref|YP_003142981.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790962|gb|ACV21632.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 242

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 85/224 (37%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +    G  ++        + L   A+E    +   ++  G    
Sbjct: 13  ILVVDDDQGITTLVAEVLASAG--MDAAACHSGYDALDVFAKEPFDLVLIDIMMPGMDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   +R  +  P++ ++        +     G DD + KP   RE++AR+ A  R    
Sbjct: 71  ELCANLRQVTDAPIVFLTAKDGESDLVVGLSLGADDYIVKPFRPRELVARIRARLRTPSA 130

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++   T    +     +  + G    L  +E  +L +L    G+ V+   ++   
Sbjct: 131 GAFEPSDVVVTRDFDINRRTHEAMLHGCRLDLTPKEFAVLLHLAERAGEPVSARDLYERA 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +G   +A   N V  HI  LRKK  +       +D+   +GY +
Sbjct: 191 WGETYDASAGNTVMVHIRHLRKKCADVDSSQTFIDTVWGVGYRL 234


>gi|332088374|gb|EGI93492.1| transcriptional regulatory protein baeR [Shigella boydii 5216-82]
          Length = 240

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVCQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|256545415|ref|ZP_05472777.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
 gi|256398811|gb|EEU12426.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
          Length = 237

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +     +    +G ++  F + + +E L     E +  I   L+       
Sbjct: 6   ILIIEDEQGISKIIKSYLEKEGYNV--FQAFDGKEGLDFFENEQIDLILLDLMIPKISGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S VP+I ++   S +  ++    G DD V KP   +E++ R+  + RR++ 
Sbjct: 64  DLIKEIRNKSNVPVIMVTAKVSEENIINGLKLGADDYVTKPFSPKELMQRIKTVLRRIEK 123

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N       +   G + +  +       GE   L + E +I++ L +N  K   + +I  
Sbjct: 124 YNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEIIE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
             +G FD    +  +++HI  +R+K+ +     D + +   +GY 
Sbjct: 184 ITFG-FDYDAYDRAIDTHIKNIRQKIEDNPKKPDYIKTIYGMGYK 227


>gi|293394527|ref|ZP_06638823.1| two component response regulator [Serratia odorifera DSM 4582]
 gi|291422992|gb|EFE96225.1| two component response regulator [Serratia odorifera DSM 4582]
          Length = 220

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ DG        G +L+ F          +SA  D   ++  L   G   L
Sbjct: 3   ILLIEDDKIIGDGINVGLTKLGFNLDWFTDGVIGRQALTSAPYDAVILDLSLP--GIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  R A   VP++ ++   +L+  +    +G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DLLREWREAGHDVPVLILTARDALEQRVSGLQNGADDYLCKPFALAEVAARLQALIRRRH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G +   +  R   + GE   L  RE  +LE L+ N+G+ +A+  I   +Y 
Sbjct: 121 GQLTPQLVHGKLVFDTAARSVCLNGEPVILTPRELAVLELLLNNKGRVLARPLIQEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE HI  LR+KL    G   + +   +GY++
Sbjct: 181 -WDDEVSSNAVEVHIHHLRRKL----GNGVIRTVHGVGYTL 216


>gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          DG   +     + EE L+    E+   I   L   G   L
Sbjct: 3   ILIIEDEEQLCRSMAEGLRMDGYETD--TCFDGEEGLELCMTENYDLILLDLNLPGIDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  R  ++  P++ +S    +Q  ++  D G +D + KP H  E+ AR+ ++ RR  
Sbjct: 61  EILRQFRTFNTNTPVLILSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +       I   +  R+  V G    L R+E  +LEY + +R + ++  ++   ++ 
Sbjct: 121 IQEDVCLRCSRITFDTRTREASVDGTPLALTRKESALLEYFLLHRNRIISPEEMIEHLWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                   N +  HIS LRKKLR  LG+DP+ +K   GY ++
Sbjct: 181 GS-VNSFSNSIRVHISSLRKKLRTALGYDPIQNKIGQGYILE 221


>gi|228901257|ref|ZP_04065454.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228921393|ref|ZP_04084716.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228939836|ref|ZP_04102413.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228965658|ref|ZP_04126739.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228972725|ref|ZP_04133324.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979309|ref|ZP_04139646.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|229045415|ref|ZP_04192076.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|229110168|ref|ZP_04239744.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|229150932|ref|ZP_04279143.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|229190816|ref|ZP_04317809.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228592686|gb|EEK50512.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228632492|gb|EEK89110.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|228673360|gb|EEL28628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|228724953|gb|EEL76249.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|228780417|gb|EEM28647.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228786940|gb|EEM34920.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228794066|gb|EEM41588.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228819767|gb|EEM65815.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228838166|gb|EEM83484.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228858375|gb|EEN02838.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 214

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++           ++    + +  E +    ++    I   ++       E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQHYTV--VVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVS 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   K  
Sbjct: 60  KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  ++++HI  LRKKL        + + + +GY ID
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKID 213


>gi|255035592|ref|YP_003086213.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254948348|gb|ACT93048.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 226

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G  +E          L      D+  ++  L        
Sbjct: 3   ILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPD--IDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L ++IR      P++ +S        +   D G DD + KPIH  E+L+R+ A+ RR  
Sbjct: 61  QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +N      + V  D    +  G+   L  +E R L YLM N+ K + ++QI   +
Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +     NVV+ +IS LR K+        + + +  GY I
Sbjct: 181 WST-NMDTYTNVVDVYISYLRNKIDVDFPDKLIRTVKGTGYMI 222


>gi|148658560|ref|YP_001278765.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570670|gb|ABQ92815.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 226

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 98/235 (41%), Gaps = 27/235 (11%)

Query: 2   FVLIDDR---------ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++ DD           L + GY  +   DG S+           LQS  + +   I   
Sbjct: 3   ILVADDDLPNVKLTAFVLEEAGYKVIKAYDGPSI-----------LQSVEQYNPDLILLD 51

Query: 53  LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           ++       ++ R IR  S VP+I +S    LQ  +     G DD + KP    E+LARV
Sbjct: 52  VMMPKTNGFDVCRQIRRTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARV 111

Query: 113 AAIYRRLKV----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKR 167
            A+ RR        + R   G + +           G +  L   E R+L YLM N G+ 
Sbjct: 112 EAVLRRRNSDMLNPSARLSLGDLTLDPVEHKVLFADGRIVELTPLEFRLLYYLMKNAGRV 171

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           +  +QI S ++G +D   E N+V  +I +LR K+         V + R LGY  +
Sbjct: 172 LNTSQILSKVWG-YDYEGESNLVAVYIRRLRTKIERDPEHPRHVLTVRNLGYKFE 225


>gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 222

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          +G  +    +        +    D+  ++  L   G    E
Sbjct: 4   LLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDIVILDIMLP--GRSGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+++   P++ ++         D FD G DD + KP   R ++AR+ A+ RR   
Sbjct: 62  VLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGAP 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +       +       L  RE  +LE+LM N+   V K  I + ++  
Sbjct: 122 ERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + NVVE ++  LR+K+    G + +++ R +GY +
Sbjct: 182 HHHGPD-NVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220


>gi|15888321|ref|NP_354002.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15155989|gb|AAK86787.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 252

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G+  +  +  E   ++      DV  I+  L  +    L
Sbjct: 30  ILVIEDDLEAAAYMTKAFREAGIVADHASDGESGLFMGCENAYDVLVIDRMLPRR--DGL 87

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R    + P++ +S    +   +    +G DD + KP    E+LAR+  + RR  
Sbjct: 88  SVISELRRRGIETPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARIEVLGRRKG 147

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +     D    G+   L  RE R+LEYLM N G+ V +T +   ++
Sbjct: 148 KPEQDMIYRVGDLELDRLSHDVRRGGKEILLQPREFRLLEYLMKNAGQVVTRTMLLENVW 207

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY +
Sbjct: 208 D-YHFDPQTNVIDVHVSRLRSKIEKDFEKPLLKTIRGAGYMM 248


>gi|302537791|ref|ZP_07290133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302446686|gb|EFL18502.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 226

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   +++G        G  +    + E    L    R ++  ++  L   G   ++
Sbjct: 5   LLIEDDPSIREGVGLGLRRRGHEVSAAATGEEGLALIGGFRPELVLLDLMLP--GINGVQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP+I ++        +   ++G DD + KP     I AR+ A+ RRLK  
Sbjct: 63  VCRRIRETSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEIIEARIKAVLRRLKGP 122

Query: 123 N---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +   G      GE   L   E ++L +L A+  +  ++ Q+   ++ 
Sbjct: 123 GGLPGVEHHGELAIDRAGLTVAKNGERVALAPSEIKLLLHLSASPEQVFSRQQLLEYVW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
                 +  +V++ + +LR K+ +  G    + + R  GY  
Sbjct: 182 EHSYHADARLVDACVRRLRNKVEDPDGHPRYIQTVRGFGYRF 223


>gi|253579380|ref|ZP_04856650.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251849478|gb|EES77438.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 220

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +      G DG  +    + +  + ++     D+  ++  +   G    
Sbjct: 4   LLVVDDEVSILELIKNSLGKDGYLITVCQNADDVD-IKKLHFYDLILLDVMMP--GTDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR     P++ ++     +  L     G DD + KP   +E+ ARVAA  RR K 
Sbjct: 61  EFCKQIRNMVDCPILFLTAKTLEEDILFGLGIGADDYITKPFRIQELRARVAAHLRREKR 120

Query: 122 SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++   +    IR     +   V  +  PL + E  I EYL  NRG+   K QI+ A++G
Sbjct: 121 EHHSTLSFEPDIRFDLSAKVLYVSEQPVPLTKSEYSICEYLAKNRGQVFTKEQIYEAVFG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   + + + +HI  +R KL +     PV +   +GY  +
Sbjct: 181 -FDGIGDNSTISTHIKNIRAKLEH-FKISPVSTVWGIGYKWE 220


>gi|22537765|ref|NP_688616.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           2603V/R]
 gi|25011712|ref|NP_736107.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           NEM316]
 gi|76788698|ref|YP_330242.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909]
 gi|76799420|ref|ZP_00781570.1| CsrR [Streptococcus agalactiae 18RS21]
 gi|77405803|ref|ZP_00782887.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B]
 gi|77408493|ref|ZP_00785231.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1]
 gi|77411918|ref|ZP_00788249.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           CJB111]
 gi|77414229|ref|ZP_00790391.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515]
 gi|22534656|gb|AAN00489.1|AE014265_18 DNA-binding response regulator CsrR [Streptococcus agalactiae
           2603V/R]
 gi|24413252|emb|CAD47331.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563755|gb|ABA46339.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909]
 gi|76585229|gb|EAO61837.1| CsrR [Streptococcus agalactiae 18RS21]
 gi|77159718|gb|EAO70867.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515]
 gi|77162015|gb|EAO72995.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           CJB111]
 gi|77172935|gb|EAO76066.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1]
 gi|77175590|gb|EAO78375.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B]
 gi|319745623|gb|EFV97924.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 229

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +    E L ++  +D   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELLHEGYDVVVETNGR--EGLDTALEKDFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++A     ++ ++   S+   +   D G DD + KP    E+LARV AI+RR ++
Sbjct: 63  EITRRLQAEKTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEI 122

Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E G       + + +  R      E   L +RE  +L  LM N  + + + ++  
Sbjct: 123 ETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEISLTKREFDLLNVLMTNMNRVMTREELLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D A E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 HVW-KYDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVI 226


>gi|325263883|ref|ZP_08130616.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
 gi|324030921|gb|EGB92203.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
          Length = 224

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +       F   G  +   ++   E   QSS   D+  ++  +   G    
Sbjct: 5   ILVADDEPGIVQLLRDYFEMQGYEVASASNG-VEALDQSSHNPDLILLDVNMP--GIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R+IR H   P++ ++     Q  +     G DD + KP    E+ ARV A  RR + 
Sbjct: 62  EVCRMIRDHVSCPILFLTAKVEEQDRIQGLMLGGDDYILKPFSIDELGARVEAHLRREER 121

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +    R     G    L + E  I+E L  + G+   + Q++  + 
Sbjct: 122 RSQSQAVKIQGSLAIHYTERSVYYDGRALNLTKTEFNIVELLSMHSGQVFTREQVYDRVR 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G +D   + ++V  HI ++R K+        +++   +GY 
Sbjct: 182 G-YDGDGDSSIVTEHIRRIRAKMSAVSEKQYIETVWGVGYK 221


>gi|110798695|ref|YP_695502.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168211129|ref|ZP_02636754.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|110673342|gb|ABG82329.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170710848|gb|EDT23030.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 226

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEVDLIILDVMLPE--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR  S+VP+I ++   ++   +   D+G DD + KP    E+LAR+    ++   
Sbjct: 62  EVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + +  +   +
Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G ++   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 182 CG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223


>gi|30262004|ref|NP_844381.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527270|ref|YP_018619.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184844|ref|YP_028096.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319288|ref|ZP_00392247.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165870159|ref|ZP_02214815.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167638255|ref|ZP_02396532.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686370|ref|ZP_02877591.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705941|ref|ZP_02896403.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650880|ref|ZP_02933777.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566407|ref|ZP_03019325.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036950|ref|ZP_03104329.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218903126|ref|YP_002450960.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227815205|ref|YP_002815214.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254684569|ref|ZP_05148429.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721327|ref|ZP_05183117.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734873|ref|ZP_05192585.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741273|ref|ZP_05198961.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254750824|ref|ZP_05202863.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760064|ref|ZP_05212088.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256630|gb|AAP25867.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502418|gb|AAT31094.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178771|gb|AAT54147.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714047|gb|EDR19568.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513556|gb|EDR88925.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170128943|gb|EDS97808.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669446|gb|EDT20188.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083341|gb|EDT68402.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562542|gb|EDV16509.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990439|gb|EDX54428.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218537031|gb|ACK89429.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227005965|gb|ACP15708.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 229

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 62  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHDEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|330002909|ref|ZP_08304459.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
 gi|328537146|gb|EGF63418.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
          Length = 232

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  ++  D+  ++  L        
Sbjct: 8   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDV--NGW 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 66  DIVRMLRTAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R          L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 126 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 186 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 228


>gi|302670905|ref|YP_003830865.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395378|gb|ADL34283.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 232

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++G  + + ++ +E  E L+  AR  ++ ++  +       
Sbjct: 4   ILVCDDDKEIVEAIEIYLEEEGFRVFKAYDGVEALEILR-QARIQLAIVDIMMPR--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L + +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 61  IRLVKEVRRFSTIPVIFLSAKSEDADKILGLNIGADDYITKPFNPLELIARVKSNLRRYT 120

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++N    G + +  + ++  V GE   L   E  IL +L+ N+GK  +  QI+
Sbjct: 121 TLGSEVTNDNVYTVGGLVIDDNSKECFVFGENIKLTPVEYNILCFLVKNKGKVYSIEQIY 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             I+        +N +  HI  +R+K+  N      +     +GY I+
Sbjct: 181 EHIWNESVGGRSDNTIAVHIRHIREKIEINPKDPKFLKVVWGVGYKIE 228


>gi|302560283|ref|ZP_07312625.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302477901|gb|EFL40994.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 225

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E          L++  R  +  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPA--ALEAGMRGGIDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +R     VPL+ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRSEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|251794279|ref|YP_003009010.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247541905|gb|ACS98923.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +            ++     +    ++     D+  ++  L        
Sbjct: 4   ILIIEDDPVIAEVQKDYLLAHSFEVDIAERGDSGLEMELRGEYDLILLDLMLPS--MDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  S VP++ +S        +  F  G DD + KP    E++ARV A   R + 
Sbjct: 62  EVCRRIREASNVPILIVSAKKEEIDKIRGFGLGADDYILKPFGLGELVARVKAHLSRYER 121

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +      IR+    R   V         +E  +L YL+ +  +   K  
Sbjct: 122 LVGQGHNGQHRDELRLNGIRIEKQSRRVFVNEREVSFTAKEYDLLFYLVTHPNRVFRKED 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +F  I+G+     +   V  HISKLR+K+ R+      V++   +GY  +
Sbjct: 182 LFEQIWGMDAIGSDHATVTVHISKLREKIERDPSKPQYVETIWGVGYRFN 231


>gi|95929117|ref|ZP_01311862.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135018|gb|EAT16672.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 231

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG  +    + E           D+  ++  L   G   L
Sbjct: 5   ILIVEDEEDILALVHYNLSRDGFEVTTATTGEDGVEQARKEHPDLMILDLMLP--GMDGL 62

Query: 62  ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   +   R    +P++ ++        +   + G  D V KP   + +LARV A+ RR
Sbjct: 63  EVCETLKKDRELRDIPIVMLTAKGEESDIVKGLEMGAADYVTKPFSPKVLLARVKAVLRR 122

Query: 119 LKVSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +  +           E   + +     +  V G    L   E R+L +L +  G    +
Sbjct: 123 YEQGDETEHVPTDAVIERHGLVIHPGRNEVLVDGRSVDLTYTEFRVLHFLASRPGWVFTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            QI +A+ G  D +V +  V+  I  LR+KL N      +++ R +GY  
Sbjct: 183 YQIVNAVRGE-DYSVTDRAVDVQIVGLRRKLGNFGH--CIETVRGVGYRF 229


>gi|301059336|ref|ZP_07200263.1| putative Sensory transduction protein regX3 [delta proteobacterium
           NaphS2]
 gi|300446565|gb|EFK10403.1| putative Sensory transduction protein regX3 [delta proteobacterium
           NaphS2]
          Length = 235

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 101/230 (43%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +  G +     +G  +   +  E    L  +   D+  ++  +   G+   
Sbjct: 5   ILVAEDDRHILSGLVDTLESEGYQVMPASDGEEALDLFKNNPFDLVLLDIMMP--GKSGY 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR+    +P+I ++        +     G DD + KP    E+LAR+AA+ RR +
Sbjct: 63  DVCREIRSTDEDIPIIMLTAKGEEIDKVVGLQLGADDYITKPFGVHELLARIAAVLRRAR 122

Query: 121 VSNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            ++  A          + G  ++ +         +   L  RE ++L++   +  + +++
Sbjct: 123 RNHEEAKKGENVPDLFKFGESQIDAKTFKMMKGRKSIDLSEREVKLLQFFFLHANEVLSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
            Q+ +A++G+ D       ++ HI++LRKK+ R+      + +   +GY 
Sbjct: 183 DQLLNAVWGI-DYYGTTRTLDQHIAQLRKKVERDPSNPRFIRTVHRVGYR 231


>gi|170760372|ref|YP_001786057.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407361|gb|ACA55772.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 232

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   + +G        G  ++        E L  + + D+  ++  L        
Sbjct: 4   IFFVEDDLSLINGLSFAIKKQGYEIDVARISLEAEALWKNGKYDLVILDVSLPD--GSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L + IR  S+VP++ ++        +   D G DD + KP      ++R+ A+ RR   
Sbjct: 62  DLCKKIRKTSKVPIMFLTAADEETDIIMGLDIGGDDYITKPFKLAVFMSRINALLRRSNN 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++    +  I V     +    GE   L   E ++L   M N    ++  QI S ++
Sbjct: 122 FNQADTELNSNGINVQLLKGEVYKNGEQLDLTASEYKLLCLFMENPDIVLSPEQILSRLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS---IDW 222
              +  ++ N +  +I +LR K+ +       + + R +GY    +DW
Sbjct: 182 DCNENYIDNNTLTVYIRRLRTKIEDNPGEPQKIVTVRCMGYKWSTVDW 229


>gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 229

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G ++           L+      +  I   L+      L
Sbjct: 5   ILVVEDDETLAQVLRKTLESEGYTVTLARDGRA--ALELGREPGLQLIILDLMLPRMSGL 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+ + V P+I ++        +     G DD ++KP +  E+LAR+ A+ RR  
Sbjct: 63  EVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTH 122

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S  +     G + +           +   L  RE ++LE L  + G+ V + +I+  ++
Sbjct: 123 QSKPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G +D AV    ++ HI++LR KL +       + +    GY  
Sbjct: 183 G-YDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRF 224


>gi|302873161|ref|YP_003841794.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688674|ref|ZP_07631120.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576018|gb|ADL50030.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 230

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 94/226 (41%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          +  ++    + + EE L      +   +   ++      +
Sbjct: 5   ILIADDNFEIIKILKPYIEKENFNV--IFAFDGEEALLKFDHYNPQLVLLDIMMPLIDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S  P+I I+        +   +SG DD + KP    E++AR+ A+ RR+  
Sbjct: 63  EVCNRIREKSNTPIIMITAKSEDADKILGLNSGADDYIIKPFSPGEVVARIKAVLRRITP 122

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N      +  P+ +  +    ++ GE   L ++E  +L  L ++  K + +  +   I
Sbjct: 123 VENSTLSVVKYPPMEIDINNYSVKIHGENINLTKKEIEVLWMLTSSPNKVIKRDDLLDNI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
           +G+ D   +   V++HI ++R KL     +   + +   +GY  + 
Sbjct: 183 WGI-DYFGDPRTVDTHIKRIRAKLALNGQYSWDIKTIWGMGYKFEV 227


>gi|149279260|ref|ZP_01885392.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149230022|gb|EDM35409.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 249

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D   +     +   + G  +    + +    LQ+    D   +   ++  G   +E+ R
Sbjct: 31  EDDVKIAGLIRSGLEEQGYDVTVSTNGQV--ALQTFLDNDFQLLILDVMMPGMSGVEICR 88

Query: 66  IIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
            +R    ++P++ ++   S+   +    SG DD + KP H +E+LAR+ A+ RR K    
Sbjct: 89  SLRQQQREMPILMLTALGSIDDKVTGLSSGADDYLLKPFHFKELLARIEALLRRHKKEAV 148

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++      I + +  ++    G+   L  +E  +LE  + N  + +++  I   ++ 
Sbjct: 149 VQEDHLLRFDDISLDTYSKEVSRAGQPISLTAKEYLLLELFLRNPNRLLSRQYIAERVWD 208

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +     NV++ +++ LR K+        + +K  +GY +
Sbjct: 209 V-NFDTGTNVIDVYMNFLRNKIEKGFDRKLIHTKIGMGYIL 248


>gi|110799600|ref|YP_696918.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168210169|ref|ZP_02635794.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213656|ref|ZP_02639281.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215869|ref|ZP_02641494.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169344243|ref|ZP_02865225.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182626272|ref|ZP_02954029.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674247|gb|ABG83234.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169297702|gb|EDS79802.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170711758|gb|EDT23940.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714853|gb|EDT27035.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177908451|gb|EDT70989.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182382158|gb|EDT79637.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 227

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++      F  +   +    S E         + D++ ++  L   G    
Sbjct: 3   ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLP--GMNGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    ++ +I ++        +     G DD V KP +  EI  RV A+ RRL+
Sbjct: 61  EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N        E    ++    +    +     +  +E  +++  M N GK   + ++ +
Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            ++G+ D   +  +V+ +I +LR K+         +++    GY 
Sbjct: 181 LVWGI-DFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYR 224


>gi|107102351|ref|ZP_01366269.1| hypothetical protein PaerPA_01003413 [Pseudomonas aeruginosa PACS2]
          Length = 228

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +     E L      D+  ++  L   G    
Sbjct: 5   LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLP--GRDGW 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R +R A   VP++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 63  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   + +    R  + QG+   L  +E  +LE L+   G+ + K+ I S ++
Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 183 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLE 224


>gi|325289382|ref|YP_004265563.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964783|gb|ADY55562.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G    F  DG       S++  + +      D+  ++  L       +
Sbjct: 4   ILILEDDENLSRGIAFTFEKDGYDAVSAGSIQDGKRMLEQHNIDLIILDLGLPD--GSGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR +S +P+I ++        +     G DD + KP     + ARV A+ RR + 
Sbjct: 62  DLCKEIRTYSNIPIIMLTACDLETDEVSGLLVGADDYITKPFSLSVLRARVEALLRRTES 121

Query: 122 -SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S +   +G  ++ ++       + E  P+   E R+L +LM N G+ ++K QI S ++ 
Sbjct: 122 ESRHIIHSGKYKLDAELCKFFRGEEEEIPISATEYRLLSFLMTNAGQVLSKEQILSFLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
                V+EN +  +IS+LR KL +       + +   +GY   WN
Sbjct: 182 NEGNFVDENTLPVNISRLRAKLEDDPKNPQTIKTIHGIGYI--WN 224


>gi|298250725|ref|ZP_06974529.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548729|gb|EFH82596.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 232

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 95/230 (41%), Gaps = 17/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED---VSAIEAFLIGKGE 58
            +++DD   +++     F    + L  F  L   + L++ A  D   V  +   ++    
Sbjct: 7   ILVVDDEPGIRN-----FIRRNLELRAFKVLLASDGLEALAHFDQANVVLVILDIMLPNM 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             LE+ R IR  S VP++ ++        +   D G DD + KP    E++ARV A+ RR
Sbjct: 62  DGLEVCRRIRQKSTVPIVMLTALGEDADKIAALDQGADDYLTKPFSVGELMARVKAVLRR 121

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    VS      G + +  + +     G+   L   E  +L+ L  + GK     
Sbjct: 122 SHWAFDEVPVSAGVKRFGGLEIDFEQKQVWRDGDPVKLSPTEFHLLQELALHPGKIFTHE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +   ++G+ +   E   +  +I +LR+KL         + ++  +GY +
Sbjct: 182 ALLRRVWGV-EYRSESEYLRVYIGRLRRKLEANPSRPTHIMTEPGIGYYM 230


>gi|255523933|ref|ZP_05390896.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185172|ref|ZP_06853582.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512364|gb|EET88641.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050006|gb|EFG89430.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 233

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G  +E               +  +  ++  L        
Sbjct: 5   ILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPV--INGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + +     + +I ++    +   +   + G DD + KP   RE++AR+ ++ RRL  
Sbjct: 63  DVCKRL-EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRRLDK 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  +     G + +    R   ++  +      E  +L  L++N G   ++ QI +
Sbjct: 122 TIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSREQILN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+ + D A     V++HI ++RKKL N    D + +   +GY 
Sbjct: 182 IIWNM-DYAGGTRTVDTHIQRIRKKLGNNY-QDLIQTVYGIGYK 223


>gi|253582131|ref|ZP_04859355.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251836480|gb|EES65017.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 220

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +      E    +      D+  ++  L  K     
Sbjct: 4   ILIVEDEKEIRNILKVYLLTAGYEVTEAADGEEAMRIFYEKPFDLVVLDIMLPKK--DGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            + R I+ +S VP+I I+   +    +  F+ G DD + KP  ++  LARV  I +    
Sbjct: 62  SICREIKEYSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTILKNKSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              NN  E G +++               L  +E  IL Y + N+   +++ ++ + I+G
Sbjct: 122 ININNEIEIGNLKINDISHSVRKGEGDLDLAPKEYEILMYFIKNKNIALSREKMLTEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D    + +V+ HI  LRKK+    G + + + R +GY  +
Sbjct: 182 -YDYTGNDRIVDVHIKNLRKKI----GDEYIKTIRSVGYKFE 218


>gi|158339279|ref|YP_001520456.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309520|gb|ABW31137.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 226

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + D   A     G +            L  S + D+  ++  L  K    L
Sbjct: 4   ILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRK--DGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RR 118
            + R IR   ++ P+I ++    +  T+   + G +D + KP    E+LAR+      RR
Sbjct: 62  TVLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRR 121

Query: 119 LKV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +     S    + G + +    R   V   V  L  +E  + E L+ +  + ++K Q+ +
Sbjct: 122 IGAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G +D     N++E +I  LR+K     G   +++ R +GY ++
Sbjct: 182 RVWG-YDYDPGSNIIEVYIRHLRRK----FGSQYIETVRGMGYRLN 222


>gi|111020130|ref|YP_703102.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819660|gb|ABG94944.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 235

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A + +        +G  +    +   E+ L  +  +   AI   ++  G    E
Sbjct: 4   LVVEDEARLANVVRRGLELEGFVV--VTAATGEDGLWHATEDTFDAIVLNIMLPGLNGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++         D FD G DD + KP     ++AR+ A+ RR   
Sbjct: 62  IVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRAAP 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +       G + +    R      E   L  RE  +LE+L+ N    + K +I   ++  
Sbjct: 122 ARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRNPDTALTKGEILRNVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                +EN+VE ++  LR+K+    G   +D+ R +GY +
Sbjct: 182 H-YDGDENIVEVYVGYLRRKIDAPFGAHTIDTVRGVGYRL 220


>gi|227545063|ref|ZP_03975112.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300909268|ref|ZP_07126729.1| response regulator [Lactobacillus reuteri SD2112]
 gi|77745287|gb|ABB02544.1| response regulator [Lactobacillus reuteri]
 gi|227184961|gb|EEI65032.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300893133|gb|EFK86492.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 239

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 106/236 (44%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +    E  ++ +E EE +     + D+  ++  L  K   
Sbjct: 3   ILMIEDNHSVCEMMAMFFKKEKWHYEFAYDGVEAEEKFNADPHKWDIILLDLNLPKK--D 60

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++   IR  S  VPLI ++   +    +   + G DD V KP     ++AR+ A+YRR
Sbjct: 61  GMQVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSTITLIARIKALYRR 120

Query: 119 LKVSNNR------------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRG 165
             ++                +T   ++ +  R+  + G+    L  +E  +L+ L +   
Sbjct: 121 THLNKLEDVQDTDSDDTFDIQTKNFKMNTKTREVFLYGKPVGDLTPKEFDLLKTLASKPR 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++Q+   ++  ++   +E  V++HI KLR+KL N +G   + +   +GY  D
Sbjct: 181 QVFTRSQLLQLVWD-YEYYGDERTVDAHIKKLRQKLEN-IGPQVIKTVWGVGYKFD 234


>gi|324327183|gb|ADY22443.1| two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 4   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIMMPFV--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 62  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 122 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221


>gi|312792374|ref|YP_004025297.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179514|gb|ADQ39684.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 221

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +         ++G ++   NS   ++ L+     D+  ++  L     +  
Sbjct: 4   ILVVEDQQDLNQIITRFLKNEGFNV--INSYTAKDALEKLNDADLIILDIMLPD--MEGY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +   +   +P I ++        L  F+ G +D + KP    E++ARV  + RR + 
Sbjct: 60  EVLKEA-SKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRN 118

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G + +F       V GE   L  +E  +L +L  N+    ++ +I   ++G
Sbjct: 119 FEESIKLLGGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG 178

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   E   V+ HI +LR+KL++      + +   +GY +
Sbjct: 179 -FDFIGETRTVDVHIKQLREKLKDY--KFLIKTVWGVGYKL 216


>gi|228945616|ref|ZP_04107966.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814134|gb|EEM60405.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 232

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GMDGF 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 65  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKANTITSGPFLLNIVEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|87199616|ref|YP_496873.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135297|gb|ABD26039.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 228

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A      +    ++G  ++         ++ +        ++  L   G   +
Sbjct: 5   ILLVEDDADTAAFIVGGLAEEGFVVDRARDGREGLFMGTDHTYQCIVLDRMLP--GLDGM 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R A    P+I +S   + +  +     G DD + KP    E+LAR+  + RR  
Sbjct: 63  AVLAALRGAGVHTPVIILSALGATEDRITGLTRGADDYLAKPFAFAELLARIRLLVRRGS 122

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +     +   G + +    R          L  RE R+LE+L+ +  + V +T +   +
Sbjct: 123 GAPTEQTKLSCGDLEMDLLSRRVRRGARAIDLQPREFRLLEFLLRHADQVVTRTMLLEGV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +      NV++ HIS+LRKK+        + + R  GY I
Sbjct: 183 WD-YHFDPGTNVIDVHISRLRKKIDEGEVVALLHTVRGAGYRI 224


>gi|332308855|ref|YP_004436705.1| two component heavy metal response transcriptional regulator,
           winged helix family [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176184|gb|AEE25437.1| two component heavy metal response transcriptional regulator,
           winged helix family [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D     D       + G  +E   +             ++  ++  L    G K+
Sbjct: 3   ILVVEDETKTGDYIKQGLAESGFVVELVRTGLDGHHKAMLGEYELIILDVMLPDIDGWKI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L   R   +++  P++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 63  LSSLRE--SNNHTPVLFLTARDHVNDRVKGLELGADDYLVKPFAFAELLARVRTLIRRGT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V NN      + +    R     G    L  +E  +LE ++  +G+ + ++ I S ++ 
Sbjct: 121 SVPNNILHIADLELDIPSRIATRSGRTINLTTKEFTLLELMVRRQGEVLPRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +   + NV++  I +LR K+ +      + + R +GY +
Sbjct: 181 M-NFDSDTNVIDVAIRRLRAKIDDDFSLKLIQTVRGMGYKM 220


>gi|330889138|gb|EGH21799.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 220

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G +L+     +    L +   E    +   L        
Sbjct: 3   LLLVEDDRAIGQGIRVALNTEGYTLDWLE--DGLSALHALRSEPFDLLLLDLGLPRMDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +    QG   P+   E ++L  LM   GK V + ++   +YG
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSHTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E  I  LRKKL      + + + R +GY ++
Sbjct: 181 WQDK-VESNTLEVLIHNLRKKL----STELIRTVRGVGYLLE 217


>gi|255523524|ref|ZP_05390492.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512781|gb|EET89053.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 232

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + D   +    DG   E F + E +  L++  R +   I   L+       E
Sbjct: 8   LVIDDENKIVDVIRSYLERDG--AEVFEAFEGKNALETFERVNPDLIILDLMLPDMTGEE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S+VP+I ++     ++ +     G DD V KP   RE++AR+ A+ RR+   
Sbjct: 66  ICKAIRKKSRVPIIMLTAKIDEKSVISGLHIGADDYVTKPFSPRELMARIFALLRRVSEE 125

Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G + V    R+   +GE   L   E ++L  L+    K   + ++ +A
Sbjct: 126 AVPLSDIVSLNNGDLVVDVLKREVRKKGENINLTITEYKVLMALLKYPQKTFTREELINA 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + G  D    + V+++H+  LR+KL  N    + + +    GY +
Sbjct: 186 VLGE-DYDGYDRVIDTHVKNLRQKLETNPKEPEYIITVHGTGYRL 229


>gi|300022650|ref|YP_003755261.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524471|gb|ADJ22940.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 223

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   +     A   D G +++     E   +L  +   DV  ++  L    G  +L
Sbjct: 4   LVVEDDKDLNRQLAAALADAGFAVDTAADGEEGYFLGDTEPYDVVILDIGLPKIDGISIL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  +  R+  ++P+I ++        +   D+G DD + KP H  E+LARV A  RR   
Sbjct: 64  E--QWRRSDRKMPVILLTARDRWSDKVTGMDAGADDYLAKPFHMEELLARVRAQIRRASG 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  E GPIR+ +        G    L   E R+L YLM + G+ V++T++   +Y  
Sbjct: 122 HVKSEIECGPIRLDTKSARVTCDGLPVKLTSHEFRLLAYLMHHNGRVVSRTELVEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  I +LRKK+      D + + R LGY +
Sbjct: 182 -DFDRDSNTIEVFIGRLRKKI----PGDVIQTVRGLGYRM 216


>gi|229591553|ref|YP_002873672.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363419|emb|CAY50598.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 227

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      ++         +    +  ++  L   G   +
Sbjct: 7   ILIVEDEPKLAALLQDYLVAAGYPTLCLDNGLQVVPTVRAQPPRLILLDLMLP--GRDGM 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S VP+I I+        L   D G DD + KP   RE++ARV AI RR   
Sbjct: 65  QVCQDLRGFSAVPIIMITARVEEVDRLLGLDLGADDYICKPFSPREVVARVKAILRR-GP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               +    + +        + G    L   E R+L     + G+  ++ Q+   +Y   
Sbjct: 124 QLLSSTPARLLIDETQYRASLDGVALDLTPLELRLLSTFARSAGRVFSRDQLLDKLYSDH 183

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
              V +  V+SHI  LR+KL     G  P++S   +GY  
Sbjct: 184 -RVVTDRTVDSHIRNLRRKLEQACPGETPIESLYGVGYRF 222


>gi|297582974|ref|YP_003698754.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141431|gb|ADH98188.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 228

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A + +        +G  +   +  E        +  D+  ++  L       L+
Sbjct: 4   LIIEDDANIAELVSLYMEKEGWRVTIASDGEEGLSCYYDSEPDLLIVDIMLPEV--NGLD 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + R +R   + VP++ ++        +   D+G DD + KP   +E+LARV ++ RR   
Sbjct: 62  ICRDVRQDDRLVPILILTGKGETDDIVRGLDAGADDYLVKPFEPKELLARVKSLLRRSFP 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S      G   +  +  +  + GE+     RE R+L  L+  +G+ +++ QI   ++
Sbjct: 122 YAGSTTFFTAGNTSLSPEQHEWRINGELIAAAPREIRVLSLLVHCKGQTLSREQILDPVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  D   +   V+ H+ ++R+KLR       + + R +GY I+
Sbjct: 182 GK-DFDGDPRTVDVHMKRIREKLRTFESDWSLVTVRGVGYRIE 223


>gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 230

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +  G     G +G ++   +  E    L  + + D+  ++  L   G   L
Sbjct: 5   ILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTEQPDLVVVDVMLPRMG--GL 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR    ++P++ +S        +     G DD + KP   +E+LAR+ A+ RR +
Sbjct: 63  EVIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRR 122

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+       G I +  D R   V G    L  RE  +L + + +  +  ++ Q+ 
Sbjct: 123 SRGEGAQPKAIRRAGEIELDLDARRALVDGRALELTSREFDLLAFFVTHPDRVYSREQLM 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222
            A++G          V++ +++LR  + +       +++ R +GY  + 
Sbjct: 183 EAVWGSR-YFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGYRFNV 230


>gi|325282397|ref|YP_004254938.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324314206|gb|ADY25321.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 222

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G              L      D+  ++  L        
Sbjct: 5   ILVIEDNPDISRVVQYELEQAGYEALTAPDGISGLTLAREEHPDLVILDLGLPD--LDGA 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R +S +P+I ++   +L   +   ++G DD + KP +  E++ARV     R + 
Sbjct: 63  EVTRRLRKNSSMPIIILTAMDALDRKVALLEAGADDYMTKPFYPEELVARVKVQL-RHQQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +    G + +    R    +G    L  RE  +L +L    G+  ++ +I   ++   
Sbjct: 122 HGDVIRVGDLEIHPQKRLCYFKGHEVRLSPREFDLLTFLARQPGRVYSRAEIEREVW-SG 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D     NVV+ H++ +R KLR+  G+  + + R +GY++
Sbjct: 181 DLPSNSNVVDVHMANMRSKLRDLDGYGLIRTVRGIGYAL 219


>gi|17351934|gb|AAL38203.1|AF319447_1 putative response regulator RR96 [Listeria monocytogenes]
          Length = 232

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            ++ DD   + D       ++G ++  + + +  E   L    +  +  ++  +      
Sbjct: 7   ILIADDDKEIVDLVKLYLQNEGYTI--YQAYDGAEVWRLVQEKQPTLVILDIMMPE--MN 62

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R++R +    P++ +S        +    +G DD + KP +  E+  RV AI RR
Sbjct: 63  GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 122

Query: 119 LKVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++  +          +GPI V        V G+   L   E  IL  L +  G+  +   
Sbjct: 123 MQQMSQAEPVVKIKSSGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEY 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           IF  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 183 IFEKIWQEK-ALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 231


>gi|56708575|ref|YP_170471.1| two component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671046|ref|YP_667603.1| two component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118498024|ref|YP_899074.1| two-component response regulator [Francisella tularensis subsp.
           novicida U112]
 gi|134301473|ref|YP_001121441.1| two component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931193|ref|YP_001891177.1| two component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194323249|ref|ZP_03057033.1| two component response regulator [Francisella tularensis subsp.
           novicida FTE]
 gi|224457753|ref|ZP_03666226.1| two component response regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371203|ref|ZP_04987205.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254373380|ref|ZP_04988868.1| hypothetical protein FTCG_00968 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254875432|ref|ZP_05248142.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|54112897|gb|AAV29082.1| NT02FT1880 [synthetic construct]
 gi|56605067|emb|CAG46176.1| two component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321379|emb|CAL09559.1| two component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423930|gb|ABK90320.1| two-component response regulator [Francisella novicida U112]
 gi|134049250|gb|ABO46321.1| two component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569443|gb|EDN35097.1| hypothetical protein FTBG_00969 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151571106|gb|EDN36760.1| hypothetical protein FTCG_00968 [Francisella novicida GA99-3549]
 gi|187712102|gb|ACD30399.1| two component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194322613|gb|EDX20093.1| two component response regulator [Francisella tularensis subsp.
           novicida FTE]
 gi|254841431|gb|EET19867.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159799|gb|ADA79190.1| two component response regulator [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332678746|gb|AEE87875.1| response regulator in two-component regulatory system with PhoQ
           [Francisella cf. novicida Fx1]
          Length = 229

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +       F ++G+        +   +L ++   DV  I+  +       + 
Sbjct: 8   LVADDDKKIAQFIKTKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWMMPY--LDGIS 65

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L +I+R  +   P+I +S   S +  ++   SG DD + KP    E++ RV  +Y+R K 
Sbjct: 66  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 ++   G I +     +     E+  L +RE ++L  L+ ++ + V+KT I   +
Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 186 WD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 227


>gi|38233301|ref|NP_939068.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199560|emb|CAE49211.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 232

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                 +   D+  ++  L   G   +
Sbjct: 12  ILVVDDDPAISEMLTIVLEAEGFEPVAVTDGAVAVDAFRTESPDLVLLDLMLP--GMNGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ RIIR  S VP++ ++        +   +SG DD +NKP   +E++AR+ A  RR + 
Sbjct: 70  DICRIIRQESAVPIVMLTAKTDTVDVVLGLESGADDYINKPFKPKELIARLRARLRRTED 129

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S +   E G + +   G +     E   L   E  +L  L +  G+   + ++   ++G 
Sbjct: 130 SPSETIEIGDLTIDVLGHEVTRGDEEIQLTPLEFDLLLELASKPGQVFTREELLQKVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +  A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 189 YRNASDTRLVNVHVQRLRSKIEKDPENPHIVLTVRGVGYK 228


>gi|327440492|dbj|BAK16857.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 226

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 97/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEK 59
            +++DD   +         + G  +  F + +  E L    RE  D++ ++  +      
Sbjct: 4   ILIVDDDINILQLVNIHLSEAGFKV--FQAKDGTEALGILNREVCDLAVVDVMMPF--MD 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              L R+IR    +P+I ++    ++     + SG DD + KP   +E+  R+ A+ RR 
Sbjct: 60  GYALTRVIRKKYDIPVILLTAKNQIEDKEIGYKSGTDDYLVKPFEPKELNFRIEALLRRY 119

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   +    G   +     + ++      LP +E  +L +L  N  +  ++  +   I
Sbjct: 120 DKQSDESIIRLGSTTINKKSYEVQIGDRTILLPLKEFELLYFLALNPMQVFSRDHLIEHI 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+ D   +E  V+ H+ +LR++         + + R +GYS++
Sbjct: 180 WGV-DYEGDERTVDVHVKRLRERFSKLTDDFHIKTVRGVGYSLE 222


>gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + DG       +G +++   +     W+    R D   ++  +   G    
Sbjct: 3   ILVVDDEVRLVDGVRRGLEAEGFAVDVAANGVDGLWMAQEHRYDAIVLDIMMP--GMNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +   +RA     P++ ++        ++  D+G DD ++KP  +  ++AR+ ++ RR  
Sbjct: 61  TVCERLRAAEDWTPILMLTAKDGEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRRGS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G +++    R          L  RE  +LE+L+ N G  V+K Q+   ++ 
Sbjct: 121 RERPVVLEAGDLQLDPAARRVRRGDVEIELTSREFAVLEFLIRNAGDVVSKRQVLDNVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N+VE ++  LR K+    G   +++ R  GY +
Sbjct: 181 G-DFEGDPNIVEVYVRHLRNKVDRPFGRASIETLRGAGYRL 220


>gi|163838960|ref|YP_001623365.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952436|gb|ABY21951.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 248

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +   +       G  +EG F   E     +S    ++  ++  L       
Sbjct: 21  ILIVEDDPNINAAFKLALSQRGPQVEGCFLGAEGVIAARSQNPPELIVLDLMLPD--LDG 78

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R IR  S VP+I ++        +   ++G DD V KP+    + AR+ A+ RR  
Sbjct: 79  FSVCRAIRQTSLVPIIMMTARSDDADIVVGLEAGADDYVVKPVDPAILDARILAVLRRNN 138

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                A+       G +R+              PL   E R+L  L+ + G+  ++ Q+ 
Sbjct: 139 FEGEAADKADVVINGALRIDRSALSVSKNNAPLPLSPTEIRLLLELLQHPGQVRSREQLL 198

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
            +++G  +  ++  +V++ I +LR K  +      +  + R  GY  D
Sbjct: 199 RSVWGA-EYLLDSRMVDASIQRLRSKNEDDPSNPQIVVTVRGFGYRFD 245


>gi|153939612|ref|YP_001390321.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935508|gb|ABS41006.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318412|gb|ADF98789.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 240

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++IDD   +      +   +G     + +   E+  +   +   D+  ++  L     +
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQ-NIYYATNLEDGFKEFNKVEPDIVILDIMLPD--GE 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             EL + IR+ S+VP++ +S        +  F  G DD + KP   +E+  RV A  RR 
Sbjct: 68  GYELCKTIRSKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRY 127

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     N    GP  +     + +  GE+  L  +E  ++ +   +  + ++K +I
Sbjct: 128 SYVENVNEEKNILSFGPFELNISKAEFKKDGEIIELKPKELALISFFAKHPNQIISKEKI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G  D    +N +  HI +LR+K+  +    + + + + LGY +
Sbjct: 188 CDNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKL 234


>gi|29830024|ref|NP_824658.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607134|dbj|BAC71193.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  V  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGMQGGVDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +RA    +P++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRAEGHTIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|330900238|gb|EGH31657.1| heavy metal response regulator [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 228

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D             + G +++   +         +   D+  ++  +   G    
Sbjct: 3   LLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMP--GLDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A   VP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EVIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S       + G ++V    R     G+   L  +E  +LE LM  +G+ ++K+ I S +
Sbjct: 121 SSLQVQTSLQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 WDM-NFDSDTNVIEVAIRRLRAKIDDDFEVKLLHTCRGMGYMLE 223


>gi|291548336|emb|CBL21444.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          DG   +     + +E L+    E+   I   L   G   L
Sbjct: 3   ILIIEDEKQLCQSIAEGLRMDGYEAD--TCFDGDEGLELCLVENYDLILLDLNLPGVDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  R   +  P++ +S    +Q  ++  D G +D + KP H  E+ AR+ ++ RR  
Sbjct: 61  EILRQFRESDTSTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   + G I   +  R   + G    L R+E  +LEY + ++ + ++  ++   I+ 
Sbjct: 121 IQQDVCLQCGRISFDTRTRKASIDGLPLSLTRKESSLLEYFLLHQNRIISPEEMIEHIW- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D +V    N +  HIS LRKKLR  LGFDP+ +K   GY +
Sbjct: 180 --DGSVNSLSNSIRVHISSLRKKLRTALGFDPIQNKIGQGYIL 220


>gi|227524026|ref|ZP_03954075.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088765|gb|EEI24077.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 230

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDG---VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++I+D   +        G+     VS +GF      + L      D+  ++  L     
Sbjct: 6   ILIIEDDESLAQSLQLFLGEIAQTTVSHDGFEG----QMLGEEGIYDLVVLDLMLPQV-- 59

Query: 59  KVLELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              ++ +  R  S   +P++ ++   +L   +  F+ G DD + KP H  E+L RV A+ 
Sbjct: 60  NGYDILKHWRTESHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALL 119

Query: 117 RRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +R     ++N+    P  V    R   V+ +   L  +E  +L Y + N    + K QIF
Sbjct: 120 KRSGHLGNDNQMVVEPFTVDLSNRTVTVRDQQLELNGKEFDLLVYFLQNPDTIITKEQIF 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G F+     +VVE ++S LRKK++      P+ + R +GY  +
Sbjct: 180 DRLWG-FESETAISVVEVYMSNLRKKIKTATDLKPIKTLRNVGYMFE 225


>gi|46203088|ref|ZP_00052097.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 232

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        +  F + G +++          L      DV  ++  L       L
Sbjct: 3   LLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLP--KLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R  +   P++ +S    +   +    +G DD + KP    E+LAR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRA 120

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 E      G + +          G    L  RE R+LEYLM + G+ V +T +  
Sbjct: 121 SVPGVTEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 181 HVWD-YHFDPQTNVIDVHVSRLRGKIDRGFENPMIHTVRGAGYVI 224


>gi|325295161|ref|YP_004281675.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065609|gb|ADY73616.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 217

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 103/223 (46%), Gaps = 12/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF--EEWLQSSAREDVSAIEAFLIGKGEK 59
             +++D   + +    +   +G  ++ +++ E    E  +     D+  ++  L   G  
Sbjct: 4   IAVVEDDISIGNLLKRILSKEGFYVKVYSTGEALINELFEYGKEYDLIILDVMLP--GMN 61

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +E  R +R    +VP++ ++        +   DSG DD V KP   +E+LAR+ A+ RR
Sbjct: 62  GVETCRFLRERKVKVPILMLTALSEEDDKVIGLDSGADDYVTKPFGVKELLARIRALLRR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +    T    +  +G   E++G+   L ++E  +L+ L  N+G  V+K  +   ++
Sbjct: 122 KETISG---TQSKEIVFNGNFVEIEGKKIELTKKEIEVLKILFENKGTPVSKETLLLKVW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              D  V +  ++ HI  LR KL  K G + + +   +GY  +
Sbjct: 179 ESRD--VSKRTIDVHIKHLRDKLG-KFG-NRIKTVWGVGYKFE 217


>gi|254820268|ref|ZP_05225269.1| hypothetical protein MintA_10086 [Mycobacterium intracellulare ATCC
           13950]
          Length = 257

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  ++  ++             DV  ++  L       L 
Sbjct: 35  LLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMAKFERVNPDVLVLDIMLPDV--DGLR 92

Query: 63  LPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   +R  S V  P + ++   S+   +    +G DD + KP    E++AR+  + RR  
Sbjct: 93  ILERVRQ-SDVYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSG 151

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +      G +RV +  R+         L   E  +L +LM N  + +++T+I   
Sbjct: 152 QPPTPTAETLIVGDLRVDTASREVTRGDTAVSLSSTEFELLRFLMRNPRRALSRTEILDR 211

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D A   ++V+ +IS LRKK+ +      + + R +GY +
Sbjct: 212 VWN-YDFAGRTSIVDLYISYLRKKIDSGREP-MIHTVRGVGYML 253


>gi|238764767|ref|ZP_04625710.1| Two-component system response regulator [Yersinia kristensenii ATCC
           33638]
 gi|238697058|gb|EEP89832.1| Two-component system response regulator [Yersinia kristensenii ATCC
           33638]
          Length = 239

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +        +G + E   + +       S       ++  L       +
Sbjct: 15  ILLVDDDVELGNMLREYLSGEGFNAELVLTGKEGIAAALSGEYTALILDIMLPD--MSGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R +R  S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 73  DVLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDE 132

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   ++      + +    R  E QG+ F L   E  +LE L+ +  + V K ++ 
Sbjct: 133 HPDAPSADDSVITHSDLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDELS 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 193 DKGLGRPREAYD-RSVDVHISNIRQKLAALPGNTLNIETVRSIGYRI 238


>gi|238028833|ref|YP_002913064.1| DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237878027|gb|ACR30360.1| DNA-binding response regulator [Burkholderia glumae BGR1]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D  +  +  +    D G ++E   +         S   DV  ++  L   G   L + 
Sbjct: 7   IEDDEITANEIVGELKDRGFAVEWVANGRDGMARALSDEYDVITLDRMLP--GVDGLTIV 64

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121
             +R+   + P++ +S    +   +    +G DD + KP    E+ AR+  + RR +   
Sbjct: 65  TTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMTARLEVLLRRSQASP 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E GP+ +    R     G    L   E R+LEY+M N G+ + +T +F A++G
Sbjct: 125 AQSETTLEVGPLALDLIARKATRDGAEIALLPTEYRVLEYMMRNAGQTITRTMLFEAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ H+ +LR+K+        + + R  GY +
Sbjct: 185 -YHFDPGTNLIDVHMGRLRRKIDPPDAPPMIRTVRGAGYIL 224


>gi|229488630|ref|ZP_04382496.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
 gi|229324134|gb|EEN89889.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 102/225 (45%), Gaps = 11/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D A++++        +G  +   +       +   A+ D++ ++  L       
Sbjct: 5   LILLVEDDAVIREATQLNLERNGFRVITASGGLTGMDMAVDAKPDIAVLDVMLPD--LNG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L R IR    VP+I +S        +   ++G DD V KP     ++AR+ ++ RR++
Sbjct: 63  ISLCRRIREELSVPVIMLSARDDPVDIVLGLEAGADDYVTKPFDSGVLVARIRSVLRRVE 122

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +    +    G + +  +       G    L   E ++L  +++   K  +++++ S 
Sbjct: 123 SHSGTEKDIVTLGDLEIDRELVTVTRSGAEVALTPTEMKLLLVMVSVPRKVWSRSELLSD 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++  +D   +  +V+ H+ +LR K+    G + + + R  GY++D
Sbjct: 183 VWD-YDWGGDTRIVDVHVQRLRTKI----GSEQIRTVRGFGYTMD 222


>gi|256389440|ref|YP_003111004.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256355666|gb|ACU69163.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 238

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D     F   G  +   +         ++   D   ++  +       +
Sbjct: 14  LLVVDDDTEIRDAIARAFRLQGYRVRTASGGLAALEQVAADPPDAIVLDVMMPE--LDGV 71

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R      P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR +
Sbjct: 72  EVCRRLRGVGDHTPVLLLTARDAVGDRVAGLDAGADDYLVKPFALAELHARMRALLRRSE 131

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + R     + +  + R     G    L R E  +LE LM N G+ + +  I   
Sbjct: 132 YDPVPESERLVFEDLELDPESRLAYRGGRTIELTRTEFALLELLMRNAGRVLPREVISDR 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G ++   E N +E  +S +R+K         V + R  GY++
Sbjct: 192 IWG-YELGPESNSLEVFVSCIRRKTEGGGEPRLVQTVRGFGYTL 234


>gi|228927067|ref|ZP_04090132.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229121552|ref|ZP_04250779.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228662016|gb|EEL17629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228832574|gb|EEM78146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 232

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GMDGF 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 65  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V +   N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|170697061|ref|ZP_02888157.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
 gi|170138235|gb|EDT06467.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
          Length = 223

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPE--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR  +
Sbjct: 61  EVLRRLRAQKQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  +   + V    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NARDILQVADLEVDLIKRRVRRADNRIDLTAQEFSLLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|89899236|ref|YP_521707.1| two component heavy metal response transcriptional regulator
           [Rhodoferax ferrireducens T118]
 gi|89343973|gb|ABD68176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Rhodoferax ferrireducens T118]
          Length = 227

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D      G+ G  ++             +   D++ ++  L   G    
Sbjct: 3   ILIVEDEPKTGDYLKQGLGEAGFVVDLLRDGTDGLHHALTEDYDLAILDVMLP--GMDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   IR A   +P++ +S    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  AVLAGIRKAGKDMPVLFLSARDHVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++        + +    R     G+   L  +E  +LE L+  + + + ++ I S ++
Sbjct: 121 KGSSTEFLRAADLELDLLRRRVTRAGKRIDLTSKEFALLELLLRRQDEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRAKVDDNFEPKLIRTVRGMGYVLE 222


>gi|261821426|ref|YP_003259532.1| PhoP family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261605439|gb|ACX87925.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 229

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+         + G  ++  +  +  ++       D++ ++  L    E  +
Sbjct: 3   ILVVEDNVLLLHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGLPD--EDGM 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R  RA  +++P++ ++     Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SMIRRWRANQAKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  V    R+  +      L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIISLPPFEVDLSRRELVIHSTPIKLTAFEYTIIETLIRNTGKVVSKDSLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK++     D + + R  GY  D
Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQADAPDVITTVRGQGYRFD 221


>gi|777765|gb|AAB38544.1| srrB [Synechococcus sp.]
          Length = 237

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + V+   +      G  +E                 D+  ++  L        
Sbjct: 6   ILVVDDDSAVRTLLVRFLSRQGYQVEAAIDGSSALAQFERFSPDLLILDVNLPDT--NGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L  I++  + V +I ++        L  F  G DD + KP     + AR+AAI RR + 
Sbjct: 64  QLCEIVQKRTGVYVILLTSRDDEADILTGFAKGADDYITKPFSLMSVGARIAAILRRQRH 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S        +++    R+    G+   L   E  +L +L  +  +   +  +  A+
Sbjct: 124 IETASQPALHYEQLQIDPARREVSFAGQPILLTALEFDLLHFLATHPDRVWRRNALIQAV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +  +D   ++ VV+ HI ++RKKL        P+ + R +GY  +
Sbjct: 184 W-EYDYVGDQRVVDVHIGQIRKKLEVNPELACPIQTVRGVGYKFE 227


>gi|291540403|emb|CBL13514.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + + EE L+     +V  +   ++      +
Sbjct: 8   ILVCDDDKEIVEAIEIYLQQEGYHI--LKAYDGEEALEVLKENEVHLLIMDVMMPRLDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 66  RATLKIREESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQ 125

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N AE        G + +  D ++  V GEV  L   E  IL  L+ N+GK  +  QI+
Sbjct: 126 LGNAAENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIY 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            +I+   D    +N V  HI  +R+K+  N      +     +GY ID N
Sbjct: 186 ESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 234


>gi|170691760|ref|ZP_02882924.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
 gi|170143044|gb|EDT11208.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G S++  N       L      DV  ++  L        
Sbjct: 3   ILIIEDEPKTGAYLKKGLEESGYSVDVANDGADGLLLAQEQDYDVIVLDVMLPT--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +++RA    P++ ++    +   +   + G DD + KP    E+LARV  + RR   
Sbjct: 61  AVLKVLRATRTTPVLFLTARDDVSDRVRGLELGGDDYLVKPFAFVELLARVRTLARRGPP 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   + G + +  + R          L  RE  +L+ L   +G+ +++TQI S ++ +
Sbjct: 121 RESELLKVGDLEIDVNRRRVRRGNTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY I+
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDDFPVKLIQTVRGVGYVIE 220


>gi|302867106|ref|YP_003835743.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302569965|gb|ADL46167.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 238

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D        DG  +    S +  + L ++  E    +   L+  G   +E
Sbjct: 12  LVVDDDRTVSDVVRRYLEQDGCRVR--LSFDGPDALATAEEEPPDLVVLDLMMPGLDGIE 69

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     +P++ ++        +   + G DD V KP   RE++ R+ ++ RR   
Sbjct: 70  VCRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAP 129

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +         G +   +D R  E  G+   L  RE  +L +L+AN G+  ++ ++   +
Sbjct: 130 QDRGPTGVLRDGDLTADTDRRVAERGGQPLSLTVREFDLLAFLLANPGRAWSRAELLDRV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G      +++ V  H+ +LR+K+ +       + +   +GY  +
Sbjct: 190 WGW--RFGDQSTVTVHVRRLREKIEDHPAQPRRIVTVWGVGYRYE 232


>gi|261408223|ref|YP_003244464.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284686|gb|ACX66657.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 92/226 (40%), Gaps = 14/226 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++E   + + +E L+     D   +   ++       +
Sbjct: 5   LVVDDEISISSAVAYALRREGYTVE--TAGDGQEALERVESFDPDVMVLDVMMPKLSGYD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +    +  ++ ++    +   +   + G DD + KP   REI+ARV A+ RR +  
Sbjct: 63  VCRRLGDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRTP 122

Query: 123 N---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +      + +    R    +G+   L  +E  ++  L  N  +  ++  +
Sbjct: 123 EAAGKQALETHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSREAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              ++ + D A     V+ H+ +LRKKL N+   + + +   +GY 
Sbjct: 183 LEQVWDM-DFAGGTRTVDIHVQRLRKKLGNQ--HEVIQTVYGIGYK 225


>gi|153939321|ref|YP_001389971.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935217|gb|ABS40715.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318056|gb|ADF98433.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 227

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 103/225 (45%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++I+D   + D  ++    DG  ++G F + + ++ L    R D+  ++  L    E   
Sbjct: 6   LVIEDEISINDILVSALRADGYKVKGVFLAKDAKDAL-DFFRPDLVLLDINLPD--ESGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R I     +P+I ++    +   +   + G DD + KP + +E+L RV    RR+  
Sbjct: 63  ELCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVNK 122

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +++   I      +V  +GR      +   L  +E  +LE+ + NR    ++  + +
Sbjct: 123 YKEKSDEEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD   E   V+ H+ +LR KL  +     +D+   +GY +
Sbjct: 183 KVWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTAFGIGYVM 226


>gi|28870461|ref|NP_793080.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|302132949|ref|ZP_07258939.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28853708|gb|AAO56775.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|330875864|gb|EGH10013.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
 gi|330966287|gb|EGH66547.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331017200|gb|EGH97256.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 227

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A+     +      G+ ++  ++         S   D+  ++  L       L
Sbjct: 4   ILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPE--MDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ IS    +   +    +G DD + KP    E+ ARV  + RR  
Sbjct: 62  TIVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSN 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + +    R+    GE   L   E ++LE+LM N G+ + +  IF  +
Sbjct: 122 PVSAAKTVLQVADLELNLISREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +      N+++ HI +LRKK+        + + R  GY I
Sbjct: 182 WG-YHFDPGTNLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|88797266|ref|ZP_01112856.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
 gi|88780135|gb|EAR11320.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
          Length = 233

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + +        +G  LE  +S E           D+  ++  +   G    
Sbjct: 6   ILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMP--GIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP++ ++        +   + G DD + KP  HRE+LAR+ A+ RR+++
Sbjct: 64  ETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIEL 123

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N+ E          + +  D       GE  P+   E ++L  LM+  GK V K  ++
Sbjct: 124 DKNQKEDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPKEDLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + G  +    +  ++ H+S +R+KL        + + R +GY  
Sbjct: 184 LEVLGR-EIMAYDRSIDMHVSNVRRKLGGTTEQSKIQTIRGIGYMF 228


>gi|312141823|ref|YP_004009159.1| two component system response regulator [Rhodococcus equi 103S]
 gi|325672915|ref|ZP_08152609.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|311891162|emb|CBH50481.1| putative two component system response regulator [Rhodococcus equi
           103S]
 gi|325556168|gb|EGD25836.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 230

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   ++D         G  +    S E      +    D+  ++  L   G    E
Sbjct: 8   LLIEDDDNLRDALSLALHRYGHVVTAAASGEAGLAALADGAPDIVVLDVMLP--GVDGFE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP+I ++        +   ++G DD V KP+  R + AR+ A+ RR   +
Sbjct: 66  VCRRIRARSGVPVIMLTARGEDVDVVSGLETGADDYVVKPVQPRILDARIKAVLRRTPTA 125

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + R   G + +  D            L R E ++L  L    G+ +++ Q+   ++G
Sbjct: 126 PTVDGREVHGDLVIDRDALTLTEGARRPELTRTEWQLLLALSERPGQVLSREQLLEKVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            FD      +V++ + +LR K+         V + R  GY  
Sbjct: 186 -FDHLGGSRLVDACVQRLRAKIEKEPSNPRYVQTVRGFGYRF 226


>gi|295093812|emb|CBK82903.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 229

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +           G S+  + +    E +      D+  +   ++      +
Sbjct: 4   ILICDDEKDIVSAIEIYLKTAGYSV--YKAYNGMEAVDMVNSNDIQLVLMDVMMPQMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  S VP+I ++        +   + G DD V KP +  E+LARV +  RR   
Sbjct: 62  TAMAKIRESSNVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRRYMQ 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   ++   G I +    +   + GE+ PL   E  IL+ LM N GK  +  +I+ 
Sbjct: 122 LGGGETPKDKLVIGGIELDDKSKQVTLDGELMPLTPTEYDILKLLMQNVGKVFSTKEIYK 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           A++   D    E  V  HI  LR+K+  N      +      GY ++
Sbjct: 182 AVW-KEDPMGAEGSVAVHIRHLREKIEINPSDPRYIKVIWGRGYRME 227


>gi|218781860|ref|YP_002433178.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763244|gb|ACL05710.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 235

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +             +++     +       S   D+  ++  L   G   +
Sbjct: 13  IWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLP--GADGV 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            L R IR  S VP+I ++        L   + G DD V KP   RE++ARV A+ RR   
Sbjct: 71  TLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRRGGE 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        GP+ +  +     V G+   + + E  +L   MA+ GK  ++ ++ + I G
Sbjct: 131 EPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSRDELIAKIQG 190

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              E  + N ++ HI  LRKKL   + G +P++S   +GY  
Sbjct: 191 RTYEGYDRN-IDWHIKNLRKKLIAAQPGLEPIESVYGVGYKF 231


>gi|154500437|ref|ZP_02038475.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC
           29799]
 gi|150270789|gb|EDM98081.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + D        +  ++E  ++ LE  E +      D+  ++  L   G   
Sbjct: 3   ILVVEDERQLCDDIAEDLELERYTVERCYDGLEAWERIL-VESYDLVILDLNLP--GMDG 59

Query: 61  LELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R + R   ++ ++ +S   SL   ++  D G DD + KP    E+ ARV ++ RR 
Sbjct: 60  LDILRSVRREKPELRVLILSARSSLANRVEGLDLGADDYLTKPFELEELEARVRSLLRRN 119

Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            V  + A T GP+ + +  R+        PL R+E  ILEYLM + GK V++ ++   I+
Sbjct: 120 FVPQSTAVTAGPLVLDTRKREISADSTPLPLTRKEFEILEYLMLHPGKTVSQEELLEHIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              +     + V  HIS LRKKL+  LG DP+ +K   GY ++ 
Sbjct: 180 DT-ESNPFSHSVRMHISSLRKKLKEALGHDPIATKIGQGYYLEV 222


>gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 241

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +   +  E        +  D+  ++  +        
Sbjct: 8   ILVVDDEASIRRILETRLSMIGYDVVTASDGEEALSTFRVSTPDLIVLDVMMP--KLDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + + +R  S VP+I ++   ++   +   + G DD + KP   +E+ AR+A I RR   
Sbjct: 66  GVCQELRKESDVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRRCFH 125

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++     G +++ ++ R      +   L   E  +LE L+ N GK  ++ ++
Sbjct: 126 KTSVNTTPNSTIIRVGNLKIDTNKRQVYKNEQRIRLTGVEFSLLELLVNNSGKVFSRLEM 185

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
              ++G +    ++  VV+ HIS+LR K+ +     + + + R  GY
Sbjct: 186 LQLLWGCVPGLHLDTRVVDVHISRLRTKVEDDPNLPELIITARGSGY 232


>gi|302540933|ref|ZP_07293275.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458551|gb|EFL21644.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
           ATCC 53653]
          Length = 249

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 98/229 (42%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++    +  G  G  +    +           R D+  ++  L        
Sbjct: 13  ILVVEDDPGIRLLLESALGLAGYQVSSAATGRDGLLEVERFRPDLLVLDVMLPD--LDGF 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R    + P++ ++    +   +    +G DD V KP    E+L R+ AI RR  
Sbjct: 71  EITRNLRGVGVRTPILFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRTG 130

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + +     +    G+  PL   E ++L  LM N G+ ++K+
Sbjct: 131 HDVPYGAGEDETEVLRYGDLELDERAHEVHRAGQYIPLSPTEFKLLTLLMENAGRVLSKS 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +I   ++G FD + +  +VE+++  LR+K+ + L    + ++R +GY +
Sbjct: 191 RILDRVWG-FDFSGDGRIVETYVRYLRRKI-DHLDPPLIHTERGVGYCL 237


>gi|328882847|emb|CCA56086.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 238

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  V  +   L   G   LE
Sbjct: 18  LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGLQGGVDLVVLDLGLPGMDGLE 75

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 76  VARRLRAEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 135

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               A  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 136 EPVAAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 195

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 196 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 236


>gi|229527792|ref|ZP_04417183.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229334154|gb|EEN99639.1| transcriptional regulator [Vibrio cholerae 12129(1)]
          Length = 224

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHV--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + IRA    V ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|149916162|ref|ZP_01904684.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Roseobacter sp. AzwK-3b]
 gi|149810017|gb|EDM69866.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Roseobacter sp. AzwK-3b]
          Length = 219

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          DG S++    L+  +    +   D+  ++  L     + +
Sbjct: 3   ILLIEDDTTLGAAVRDQIAADGRSVDWVTRLDAADDALRATSYDLILLDLMLPD--GRGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
              + +R    V P+I ++    +   ++  ++G DD + KP    E+ AR+ ++ RR  
Sbjct: 61  GFLKALRLRGDVTPVIILTALDQVTDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYC 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N     GPI V          G+   L  RE  + E  +A  G+ ++K Q+   +Y 
Sbjct: 121 GNPNPIISHGPIDVDLAAHSVHRDGKPVQLTAREWALFEAFLARPGQLLSKAQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F   VE N +E H+S+LRKKL    G   ++++R +GY +
Sbjct: 180 EFGAEVESNTIEVHVSRLRKKL----GAGIIETERGMGYRL 216


>gi|153814418|ref|ZP_01967086.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756]
 gi|317500137|ref|ZP_07958370.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087636|ref|ZP_08336564.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848814|gb|EDK25732.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756]
 gi|316898426|gb|EFV20464.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330399815|gb|EGG79475.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 235

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D A + +    +   +    ++ F+  E +  L      D+  ++  L   G   
Sbjct: 5   ILIAEDDADINNLLAKILRTEHFKPIQAFSGTEAKL-LFMHNTPDLILLDLMLP--GLSG 61

Query: 61  LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            EL   +R +  S VP+I +S   +L   +     G DD + KP    E++AR+ A  RR
Sbjct: 62  EELLSELRENLSSDVPVIILSAKIALADKVSLLKMGADDYITKPFEPEEVIARIQAALRR 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++ +     + ++ D R   V G    L   E  +L   + N  K  ++  ++  ++
Sbjct: 122 T-ATSKKLSCLNLELYPDSRKVTVHGIELSLTAHEYDLLYLFIKNPEKVYSREMLYDLVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
                  E N V  H+S LRKK+       + + +   +G+ +
Sbjct: 181 -HGGYYGENNTVNVHVSNLRKKIKEADPENEYIRTVYGIGFKL 222


>gi|90021593|ref|YP_527420.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89951193|gb|ABD81208.1| Heavy metal response regulator [Saccharophagus degradans 2-40]
          Length = 226

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  +    +      L  +   D+  ++  L   G    
Sbjct: 3   LLVVEDEVKTGDYLQQGLSEAGFMVTLARNGLDGHHLAMTETFDLLILDVMLPDVG--GW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR    Q P++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVQSIRESGCQAPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRST 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++     + +          G    L  +E  +LE L   +G+ + ++ I S ++
Sbjct: 121 APVLADQITVADLILDLPKHRALRGGRKINLSHKEFCLLELLARRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV++  I +LR K+        + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRSKIDEGFEPKLIHTVRGMGYKLDV 223


>gi|116253935|ref|YP_769773.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258583|emb|CAK09687.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 240

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  + L    G       S    + +    + D+  ++A L   GE   
Sbjct: 9   ILIVEDDPPIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLP--GEDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA   VP++ ++        +   + G DD V KP + RE+LAR+ +I RR   
Sbjct: 67  SICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRASY 126

Query: 122 SNNRAE------TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++++ E          R+    R      G    +   E  IL     N  K + + Q+ 
Sbjct: 127 AHHQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTREQLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
           S  +      VE   +++HIS++R+K+   L  DP  + + R  GY
Sbjct: 187 SMTHAGSAGPVE-RSIDAHISRVRQKIEPNL-KDPTFIKTVRLGGY 230


>gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 239

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +   +            R D   ++  +   G     
Sbjct: 16  LVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKARDVRPDAVILDVMMP--GMDGFG 73

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 74  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRTGR 133

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R     I +  D  +    GE   L   E  +L Y + N G  ++K +I   
Sbjct: 134 GAEEPKTSRLSFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGERRLLHTLRGVGYVL 235


>gi|216538|dbj|BAA03143.1| BasR [Escherichia coli]
          Length = 222

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +   +    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDTVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYMLVAN 219


>gi|330964376|gb|EGH64636.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 229

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +      G+ G  ++          L    R D+  ++  L   G    
Sbjct: 3   ILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLP--GIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++  ++RA   VP++ ++    LQ  +   + G DD + KP    E+L R+  I RR + 
Sbjct: 61  QIIEVLRARQNVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R    Q +V  L  +E  +L  L+   G  +++ QI S ++ +
Sbjct: 121 READHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+        + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRSKVDLPYPVKLIHTVRGIGYVCEV 221


>gi|268610621|ref|ZP_06144348.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 234

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    L G +G  +  + +    E +    + ++  I   ++      L
Sbjct: 8   ILVVDDDHDIVNAIAKLLGKEGYII--YKAYNGLEAIDMLMQHEIQLILIDVMMPKLDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  + +P+I +S        +     G DD + KP +  E++ARV +  RR   
Sbjct: 66  SAMMKIREKNNIPIIVLSAKSEDSDKILGLSMGADDYITKPYNPMELVARVNSNLRRYLS 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +S+N+   G + +  D R   + GE       E +I E LM N G+  +   I
Sbjct: 126 LGAAGSTMSDNKLRIGGLELDKDARQITLDGEPVKFTPTEYKITELLMENAGRTFSAEDI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +S I+     +VE N V  HI  +R+K+  N      +     +GY ++
Sbjct: 186 YSRIWNEDSYSVE-NTVMVHIRHIREKIEINPSEPRYLKVVWGIGYKME 233


>gi|264676960|ref|YP_003276866.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262207472|gb|ACY31570.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 227

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 8/224 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          +G+++   +SL   +  Q  +R     +   +       L+
Sbjct: 4   LLLEDDPAIARTICYALEREGIAVT--HSLLIADARQQWSRTAFDVLLMDIGLPDGNGLD 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +R A S VP++ +S        +   + G DD + KP   RE+LAR  A+ RR + 
Sbjct: 62  WCRELRSAGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRRSRQ 121

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               A       +++   G+   +  +   L RRE ++L+ L+   G+ +++  +   I+
Sbjct: 122 FQPAAPAQLARALQIDEQGQRALIHSKALDLTRREYQLLQSLVNAAGRILSRDALLEQIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           GL D    +  V++HI  LR KLR +L   + + + R LGYS++
Sbjct: 182 GL-DSESTDRTVDTHIKTLRAKLRERLPDQELIVTHRGLGYSLN 224


>gi|304404378|ref|ZP_07386039.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346185|gb|EFM12018.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 243

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 90/230 (39%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G ++   ++      L    R D+  ++  L       L
Sbjct: 6   ILVVDDEPEIIELMTLYLQREGYAVYAADNGTDALRLVDEVRPDLIVLDVLLKQ--LNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  + VP++ +S        +     G DD + KP    +++ARV A  RR  +
Sbjct: 64  DVCQQIREITAVPVLFVSAKSDDNDIIHGLSVGGDDYMTKPFSPGQLVARVKAHLRRQSL 123

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +         +     + +    R   V  +   L  +E  +L  L     +      +
Sbjct: 124 QSEQRDKPVRDQLVFDGLIIDLTARTVRVGDQYVSLSVKEFELLALLATQPNRAFQLANL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           + A++G+ +   +   +  H+S LRKK+  +      + + R +GY  + 
Sbjct: 184 YEAVWGV-NSIGDTRTLMVHMSNLRKKIEPDPTNPRWIVTLRGVGYKFNV 232


>gi|330940225|gb|EGH43362.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 227

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A+     +      G+ ++  ++         S   D+  ++  L       L
Sbjct: 4   ILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPE--MDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ IS    +   +    +G DD + KP    E+ ARV  + RR  
Sbjct: 62  TIVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSN 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + +    R+    GE   L   E ++LE+LM N G+ + +  IF  +
Sbjct: 122 PVSAAKTVLQVADLELNLITREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +      N+++ HI +LRKK+        + + R  GY I
Sbjct: 182 WG-YHFDPGTNLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|294084834|ref|YP_003551594.1| winged helix family two component transcriptional regulator
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664409|gb|ADE39510.1| two component transcriptional regulator, winged helix family
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 230

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +      +   +G  ++ +N  E    LQ  AR+ V      +       +
Sbjct: 5   IALVDDDQNILTSVSLMLESEGFDVDCYNDGEA--ALQGMARQPVELAVLDIKMPRMDGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL + IR +SQ+P+I ++           F  G DD + KP   R +LAR+ A+ RR   
Sbjct: 63  ELLQKIRKNSQLPVIFLTSKDDELDEALGFGMGADDYITKPFSQRLLLARIRAVLRRATE 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N    G + +  D      +GE   L   E  IL+ L +  G    + Q+  
Sbjct: 123 GVMDTAGPNVIHQGDLVMDPDRHLCSWKGEEVKLTVTEFLILQALASRPGMVKNRDQLMD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           A YG     +++  ++SHI +LR+K+R     FD +++   +GY 
Sbjct: 183 AAYGES-IFLDDRTIDSHIKRLRRKIRAHDNAFDGIETLYGIGYK 226


>gi|300780103|ref|ZP_07089959.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534213|gb|EFK55272.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 259

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 90/227 (39%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEKV 60
           +++DD   +     +     G   +   +    + +  + R   DV  ++  L       
Sbjct: 35  LVVDDEQPLAQMVASYLIRAGF--DTRQAYTGTQAVDEARRFSPDVVVLDLGLPE--LDG 90

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+   IR  S   ++ ++   +    +     G DD + KP   RE++ RV A+ RR +
Sbjct: 91  LEVCGRIRTFSDCYILMLTARGTEDDKITGLTLGADDYITKPFGIRELVTRVHAVLRRPR 150

Query: 121 VS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            S            G + +       +V   V  L R E  +L  L    G+ + +  + 
Sbjct: 151 TSTIPPQVTTPLTVGELTIDPAAHKVQVGEVVVDLTRTEFELLVTLALRPGQVLTRHDLV 210

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + ++       +E +V+ HI  LR+KL     G   +++ R +GY +
Sbjct: 211 TEVWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIETVRGVGYRV 256


>gi|217419703|ref|ZP_03451209.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|237811008|ref|YP_002895459.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242314295|ref|ZP_04813311.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|217397007|gb|EEC37023.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|237506421|gb|ACQ98739.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242137534|gb|EES23936.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
          Length = 273

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 29  ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPR--MSGL 86

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 87  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 147 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 207 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 245


>gi|297159383|gb|ADI09095.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 234

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 22/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG  +              + R D++ ++  +   G   + 
Sbjct: 7   LFVEDDDVIREATQLALERDGFVVTAAPDGLTGLERFRADRPDIALLDVMVP--GLDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 65  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124

Query: 123 N---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           +                    G + V  +G +    G+   L   E R+L    A  G  
Sbjct: 125 SGPGRGAEAEPDEPEGGVLRFGDLEVDPEGMEVRRAGQQVALTPTEMRLLLEFSAVPGTV 184

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 LSRDRLLERVWD-YGWGGDTRVVDVHVQRLRGKI----GQDRIETVRGFGYKL 232


>gi|289623884|ref|ZP_06456838.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|330869831|gb|EGH04540.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 224

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +     +L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPE--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R      ++ ++    L+  +   + G DD + +P    E+LARV  + RR + 
Sbjct: 61  EVLSRLRKTVSTRVMMVTARGRLEEKVKGLELGADDYLVEPFEFPELLARVRTLMRRSEQ 120

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + +           +   L  +E  +L  LM + G+ +++TQI S ++ 
Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222


>gi|260866719|ref|YP_003233121.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O111:H- str. 11128]
 gi|257763075|dbj|BAI34570.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O111:H- str. 11128]
 gi|323179962|gb|EFZ65519.1| transcriptional activator protein irlR [Escherichia coli 1180]
          Length = 227

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A+  +P++ ++   +++  +   + G DD   KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYQVKPFAFAELLARVRTLLRRGA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|241665358|ref|YP_002983717.1| transcriptional regulator [Ralstonia pickettii 12D]
 gi|240867385|gb|ACS65045.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 279

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 15/228 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-----AIEAFLIGKG 57
           +L++D  ++ D        DG +++     E      ++     +       +  L+  G
Sbjct: 39  LLVEDDDMIGDSVRKGLRHDGFTIDWVRDGEAALHAVTAPGAGGAEAGGTLFDLMLLDLG 98

Query: 58  E---KVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 LE+ R +R    V P++ ++   ++   +   ++G DD + KP   +E+ AR+ 
Sbjct: 99  LPKRDGLEVVRELRQRGIVIPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAARMH 158

Query: 114 AIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR    ++     G + +    R+    G    L  RE  +L  L+A  GK  +  Q
Sbjct: 159 ALLRRQGGRADPLLRHGDVVLNPVTREVLRDGVPVKLSGREFAVLHALLARPGKVWSIAQ 218

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +YG +DE V  N VE +I  LRKKL    G   + + R +GY I
Sbjct: 219 LQDNLYG-WDEEVGSNTVEVYIHALRKKL----GSHLIQNIRGVGYVI 261


>gi|217958237|ref|YP_002336783.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229137451|ref|ZP_04266062.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|217067440|gb|ACJ81690.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228646009|gb|EEL02232.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPT--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       D + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYR 219


>gi|206560046|ref|YP_002230810.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198036087|emb|CAR51982.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 221

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ D   A    +G   +    +            D   ++  L   G    
Sbjct: 3   ILLVEDDVMLADAVRAGLAQNGWRADWSADVPAARLALVGHDYDAVLLDLQLP--GASGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +RA+    P++ ++    L   +   D+G DD + KP    E+ AR+ A+ RR +
Sbjct: 61  TLLAAMRANYDATPVLIVTARDQLSDRIRGLDAGADDYLVKPFQLDELYARLRALTRRSQ 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + R     + V    R+    GE   L   E R L  LM  +G+ V + Q+   +YG
Sbjct: 121 GRVSERLVCRDVHVDPARREVTRAGEPVALSIHEYRTLLALMERQGRVVTRAQLEERVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D A+E N +  +I +LR+KL    G + + +    GY I
Sbjct: 181 N-DGAIESNTIAVYIHQLRRKL----GDELIVTVHGFGYRI 216


>gi|119511528|ref|ZP_01630637.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119463839|gb|EAW44767.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 250

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILVIDDDAAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDDRTAEIPVLMLTALSQTQNKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G + +  +  +     E   L   E  +L  L+   G+ V+ ++
Sbjct: 122 TDRIPQAAKHSEILNYGNLTLVPERFEAIWFNETVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILREVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|126435514|ref|YP_001071205.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126235314|gb|ABN98714.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 263

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +        S      +      DV  ++  L   G   LE
Sbjct: 34  LVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGLP--GIDGLE 91

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR ++ 
Sbjct: 92  VCRQLRTFSDAYVVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRMR 151

Query: 123 ----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP+ +    R+  + GE   L R E  ILE L A  G  +++ Q
Sbjct: 152 PVAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRRQ 211

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   +         E++V+ HI  LR+KL  +      + + R +GY +
Sbjct: 212 LLDIVR-EGPWVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGYRM 259


>gi|86160425|ref|YP_467210.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776936|gb|ABC83773.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 230

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +           G       + E           D+  ++  L        E
Sbjct: 5   LLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDV--SGTE 62

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R I++  +   VP++ ++        +  F+ G DD V KP   RE++ R+ A+ RR 
Sbjct: 63  VCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRS 122

Query: 120 KVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +       GPIRV  D     V G    L   E ++L  LM+  G+  ++ Q+   
Sbjct: 123 AARPSDRPPESVGPIRVDVDAHRAYVDGAEVVLTPLEFKLLTTLMSRLGRVQSREQLLED 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +  E VE   V++H+ +LR+KL +  G D +++ R +GY +
Sbjct: 183 VWEMSSE-VETRTVDTHVKRLREKLGS--GRDLLETVRGIGYRL 223


>gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314]
 gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 240

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G ++   +       +    R D   ++  +   G    E
Sbjct: 16  LVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMP--GMDGFE 73

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           L   +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 74  LLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGS 133

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++       + +  +  +    GE+  L   E  +L YLM N    ++K +I   
Sbjct: 134 VESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKILDN 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+        + + R +GY +
Sbjct: 194 VW-HYDFGGDGNVVESYISYLRRKVDTH-EPQLIQTVRGVGYVL 235


>gi|66046740|ref|YP_236581.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257447|gb|AAY38543.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330973569|gb|EGH73635.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 220

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G +L+     +    L +   E    +   L       L
Sbjct: 3   LLLVEDDRAIGQGIRVALNTEGYTLDWLE--DGLSALHALRSEPFDLLLLDLGLPRLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA +  +P++ ++        +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +    QG   P+   E ++L  LM   GK V + ++ + +YG
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E  I  LRKKL      + + + R +GY ++
Sbjct: 181 WQDK-VESNTLEVLIHNLRKKL----STELIRTVRGVGYLLE 217


>gi|192361100|ref|YP_001980663.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190687265|gb|ACE84943.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 221

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D         G +L+                 D+  ++  L   G   L
Sbjct: 3   LLLVEDNVALADELNRDLKRLGYALDWLADGRDALHQGLIEPYDLVLLDLGLP--GTSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  RA     P++ ++        +D   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  DVLRHWRAQGLHTPVLILTARDKWSERIDGLKAGADDYLTKPFHPEELQLRIQALLRRAH 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  + +   + +    +  + +GE   L   E  +L YLM +  + ++K+Q++  +Y
Sbjct: 121 GFANQPQLQAAGLVLDEARQMAQYRGETVTLTAAEFSLLRYLMLHPERILSKSQLYDHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   + NV+E HI+ LR+KL    G D ++++R  GY +
Sbjct: 181 NG-EAERDSNVIEVHINHLRRKL----GKDIIETRRGQGYRL 217


>gi|90022369|ref|YP_528196.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89951969|gb|ABD81984.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 230

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   +             S    N+  +  +WLQ++   D+  ++  L   G   L
Sbjct: 10  LIVEDEPDLAQLLNEYMQAAQYSTTVINNGTDANDWLQAN-EVDIVLLDLMLP--GMSGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR  S VP+I I+        L   + G DD + KP   RE++AR  A+ RR   
Sbjct: 67  DICRDIRKASDVPVIMITAKVEEIDRLIGLELGADDYICKPYSPREVVARTKAVLRRTLS 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++  +   + +  +     V  +   L + E R+ + L    G+  ++  I   IY 
Sbjct: 127 DTSSSEDQNQSVVLCEERSSVIVHKQEIELTQIEYRMFKLLFEQPGRIFSRQFIMDNIYT 186

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +   V +  V+SHI KLRKKL+      D + S    GY  +
Sbjct: 187 DY-RVVSDRTVDSHIKKLRKKLQAAAPEQDIIRSVYGAGYKFE 228


>gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 237

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G      N+         S   D   ++  L       L
Sbjct: 4   ILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPD--LNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+K+
Sbjct: 62  EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAK 170
                          +   + + +  R      G+   L +RE  +L  L+ N+   V +
Sbjct: 122 EKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 182 DQLLNKIWGP-ESNIETNVVEVYVRYLRNKIDIPGQPSYIKTVRGTGYMV 230


>gi|227114540|ref|ZP_03828196.1| two-component system response regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 226

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G S      L  +E +  +   D +A+   ++      +
Sbjct: 3   ILLVDDDVELGDMLCEYLNAEGFSTS--RVLTGKEGVDGAISGDYTAMILDVMLPDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR   Q+P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 61  DVLRQIRKTQQLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYDD 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K   + A +G + +    R  E +G+ F L   E  +LE L+ +  + V+K ++  
Sbjct: 121 QPSTKRDESLAASGDLVLNPATRISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELSE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 KCLGRRREAYD-RSVDVHISNIRQKLGALPGNTMTIETVRSVGYRI 225


>gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1]
 gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1]
          Length = 224

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +      +  ++G +++  F+     E + SS   D+  ++  L       
Sbjct: 4   ILIIEDEKQLNKQIKEILSEEGYTVDVSFDGATGLEKILSS-PYDLIILDIMLPE--ING 60

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             + + IR +    P++ IS    +   +   +SG DD ++KP    E++ARV AI RR 
Sbjct: 61  YNILKHIRENKILTPVLMISAKGEIDDRIKGLNSGADDYLSKPFSIAELIARVKAILRRT 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       +++  + R   +      L  +E  I+EYL++NR K V+K  I   ++
Sbjct: 121 FSQYEQIISIYNLKIDLNTRKVYINDSEVQLTSKEYGIIEYLVSNRNKVVSKFAIIEYVW 180

Query: 179 G-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  FD     N ++ HI  +RKK+ +K  +  + + R +GY +
Sbjct: 181 GDEFDPFSMSNFLDVHIKNIRKKIGDK-EYKIIQTVRGIGYLL 222


>gi|283766070|gb|ADB28435.1| two-component regulator protein PhoP [Edwardsiella tarda]
          Length = 224

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++   + +  ++       D++ ++  L   GE  +
Sbjct: 3   ILVVEDNNLLRHHLSVQMRELGHQVDAAENAKEADFFVREQSPDIAIVDLGLP--GEDGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R  R     +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SMIRRWRSEQITLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P +     R+  V   +  L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIISMPPFQADLSRRELRVNETLIKLTAFEYTIIETLIRNSGKVVSKDALMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKKL+N+   D + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQNEYPADVITTVRGQGYRFDV 222


>gi|224537739|ref|ZP_03678278.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520662|gb|EEF89767.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G ++    +    +  Q +  E    +   +I      L
Sbjct: 4   ILLVEDEVNIASFIERGLQEFGHTVSV--AYNGADGWQLAQDEPFDLLVLDIIMPKMNGL 61

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L R  R       P+I ++   +    +    +G DD + KP   +E+ AR+ A+ RR 
Sbjct: 62  DLCRQYRQLYGYDSPVIMLTALGTTDDIVKGLYAGADDYLVKPFSFQELEARITALLRRS 121

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K    +    G + +  + R          L  +E R+LE+ M N+G  +++  +   ++
Sbjct: 122 KEKRTSELVCGDLILDCNTRRARRGDHEMELTVKEYRLLEHFMNNQGVVLSRVNLLKHVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +     NVV+ +++ LR K+        + +   LGY ++
Sbjct: 182 DK-NFDTNTNVVDVYVNYLRTKIDKDYENKLIHTVVGLGYIME 223


>gi|197337216|ref|YP_002158034.1| probable transcriptional regulatory protein YedW [Vibrio fischeri
           MJ11]
 gi|197314468|gb|ACH63917.1| probable transcriptional regulatory protein YedW [Vibrio fischeri
           MJ11]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    +D        +G   +  ++ + +E L  +   D   I    +      L
Sbjct: 3   ILVIEDDQTTRDFVTKALEQEGFITD--STEDGKEGLMMAISCDYQLIILDRMLPNLDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IRA  +  P++ +S   S+   ++   +G DD + KP    E+LAR+  I RR +
Sbjct: 61  KILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALTELLARINIILRRNR 120

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++N  +   + +    +   +   + PL  +E  +L YL  N  + V++ ++F A 
Sbjct: 121 PIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAA 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HI+KLRKKL N    D +++ R  GY +
Sbjct: 181 WD-YHFDPKTNVIDVHIAKLRKKLDNSGAVDLIETVRGAGYVL 222


>gi|163814531|ref|ZP_02205920.1| hypothetical protein COPEUT_00682 [Coprococcus eutactus ATCC 27759]
 gi|158450166|gb|EDP27161.1| hypothetical protein COPEUT_00682 [Coprococcus eutactus ATCC 27759]
          Length = 239

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +      +  D+G +     S++    + +  + D+  ++  L        
Sbjct: 11  ILIVDDDADLSMLIQDMLEDNGYAFLYAASIDDAYEVLTDNKCDLILLDINLPD--GTGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
              + +R  SQVP+I  S   S    ++  D G DD + KP   +E+++R+ +I RR   
Sbjct: 69  SFCKELRHTSQVPIIFASVRTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYG 128

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           V +N++E          I +    R          +  +E  +L Y+  NRG+ + K QI
Sbjct: 129 VDDNKSEMLTLNTDGNEIEINRYARTVSRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQI 188

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            SA++GL+   VE + V  H+  LR+KL  +      + +    GY +
Sbjct: 189 MSAVWGLY-SDVEPSTVAVHVRWLREKLETDPSHPQLIRTVWGTGYVL 235


>gi|332969546|gb|EGK08565.1| subtilin biosynthesis regulatory protein SpaR [Desmospora sp. 8437]
          Length = 226

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEK 59
           + +++DD   +         D+G  +    + + E  W   + + D+  ++  +   G  
Sbjct: 4   IILVVDDERAMVSMIRDALEDEGYQV--LTAYDGESVWDLLNRKPDLILLDIMMP--GLD 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +++ R IR     P++ +S    ++  ++    G DD + KP    E++ARVAA  RR 
Sbjct: 60  GIQVCRWIRDSVSCPILFLSARREVEDRIEGLAVGGDDYITKPFSLEELVARVAAHLRRE 119

Query: 120 KVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             S ++       G + +     +      + P+  +E  ++ +L  + G+  ++ QI+ 
Sbjct: 120 LRSPDQEKTVLRFGRLLIDLKACEVRYGDRLIPMTAKEFEVIRFLAMHAGQVFSREQIYE 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
            ++G  +    +  V  HI K+R KL       P + +   +GY  +
Sbjct: 180 GVWGFGE--GSDATVTEHIKKIRAKLGAVDPVTPYISTVWGIGYRWE 224


>gi|269977562|ref|ZP_06184529.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|307701335|ref|ZP_07638356.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
 gi|269934165|gb|EEZ90732.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|307613496|gb|EFN92744.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +      G +G  +    +      LQ     D+  ++  L       L+
Sbjct: 5   LLVEDDPAIAEPLARALGREGYEVSAQTTGGA--ALQQVGGCDIVILDLGLPD--MDGLD 60

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA    +P++ ++        +   DSG DD V KP    E+LARV A+ RR   
Sbjct: 61  VARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRAGG 120

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   E   +RV               L  +E  +L  L+ + G  V++ Q+   ++
Sbjct: 121 EVTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDLLRVLIRDAGSVVSREQVMREVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G  D +     ++ H+S LR+KL  +      + + R +G+  +
Sbjct: 181 G-SDPSGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGMGFRFE 223


>gi|262274262|ref|ZP_06052073.1| putative transcriptional regulatory protein PhoP [Grimontia
           hollisae CIP 101886]
 gi|262220825|gb|EEY72139.1| putative transcriptional regulatory protein PhoP [Grimontia
           hollisae CIP 101886]
          Length = 224

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+         + G  +    +     ++      D++ ++  L  +    L
Sbjct: 3   ILIVEDDPLLSHHLKTELSELGHQVHCAQTAYEGLFVAKEYPNDIAIVDLGLPDR--DGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L R IR A  ++P++ ++   + Q  +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLIRDIRRADIRMPILILTGRANWQDKVSGLDAGADDYLVKPFQKEELVARLNALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G I +    +   + G+   L   E  +LEYL+    + V+K ++   +Y 
Sbjct: 121 GFVKPEIRAGKITIDLLAKKVSIDGQSVELTAFEYDLLEYLVRYNRQVVSKQRLLDVLYQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 181 --DQEGDPNTIEVMMSRLRKKLTQAGQENPISTVRGQGYIFE 220


>gi|182680347|ref|YP_001834493.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636230|gb|ACB97004.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 277

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +     A     G  ++   +         S    +  I+  L       L
Sbjct: 57  ILLVEDEADMASEIAAELTKLGYHVQIEETGPAGLAAARSQAMSLLIIDRMLPET--DGL 114

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L   +R      P++ +S   S+   +    +G DD + KP    E+ ARV A+ RR  
Sbjct: 115 TLIETLRQEGILTPVLVVSALGSVDEKIRGLKAGGDDYLTKPFAMGELAARVEALLRRPA 174

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +     G + +    R       +  L  RE ++LEYLM   G+ V +  +   ++
Sbjct: 175 AEARSAILRVGSLEMDLIERTVRRNERLLDLLPREFKLLEYLMRRPGQTVTRAMLLEDVW 234

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++   + N+V+ HI KLRKK+        ++S R  G+ ++
Sbjct: 235 N-YNFLPQTNLVDVHIGKLRKKIDQPGEVQMIESVRGAGFRLN 276


>gi|329120744|ref|ZP_08249406.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327460541|gb|EGF06877.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD A++ +        +G+ +      E       S + DV  +++ +       L+
Sbjct: 5   LLVDDDAVLTELLTEYLTAEGLEVRSVPDGEAGVHEILSGQYDVVVLDSMMP--KMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S +P+I ++        +   + G DD V KP   RE+LAR+ AI RR + +
Sbjct: 63  VLKTVRTQSSIPIIMLTAKGDDIDRIIGLEMGADDYVPKPSTPRELLARINAILRRAQHT 122

Query: 123 ------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI--- 173
                 +N      + +    R   V      L   E  +LE LM + G+ V+K  +   
Sbjct: 123 HDQNNISNSISVSNVTLHPSKRQATVGDAPLELTSTEFNLLEVLMRHAGQVVSKETLSIE 182

Query: 174 -FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-----RSIDVHISSIRHKLGDP---SLIQTVRGLGYLFVKN 225


>gi|58337790|ref|YP_194375.1| two-component system regulator [Lactobacillus acidophilus NCFM]
 gi|227904440|ref|ZP_04022245.1| two-component system regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58255107|gb|AAV43344.1| two-component system regulator [Lactobacillus acidophilus NCFM]
 gi|227867815|gb|EEJ75236.1| two-component system regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 238

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+    + L  +  +D  AI   L+      L
Sbjct: 4   ILIIEDEKNLARFVELELQHENYETVVENNGR--KGLDDALAQDFDAILLDLMLPDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+K+
Sbjct: 62  EIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAK 170
                          +   + + +  R      G+   L +RE  +L  L+ N+   V++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 182 DQLLNKIWGP-ESNIETNVVEVYVRYLRNKIDAPGQPSYIKTVRGTGYMV 230


>gi|257485787|ref|ZP_05639828.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|302130309|ref|ZP_07256299.1| heavy metal response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|6045171|dbj|BAA85309.1| ORFR [Pseudomonas syringae]
 gi|331012883|gb|EGH92939.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 228

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D             + G +++   +         +   D+  ++  +   G    
Sbjct: 3   LLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMP--GLDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A   VP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EVIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S       + G ++V    R     G+   L  +E  +LE LM  +G+ ++K+ I S +
Sbjct: 121 SSLPVQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIASQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + +   + NV+E  I +LR K+ +      + + R +GY +D
Sbjct: 181 WDM-NFDSDTNVIEVAIRRLRAKIDDDFEAKLLHTCRGMGYMLD 223


>gi|262371880|ref|ZP_06065159.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311905|gb|EEY92990.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +  + L       +E  N+      L +    D+  ++  L       +
Sbjct: 4   ILMIEDDFMIAESTLTLLRYHQFEVEWVNNGVDGLSLLAKHNFDLVLLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R IR  S +P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  QVLRQIRQRSALPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARINALLRRGHA 121

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               LK  +   + G + +  +      +G+   L  RE  IL  L+++  K  +K  + 
Sbjct: 122 ETAQLKSQSQLLKNGDLVLDVEQHLATFKGQQIELSNREWAILIPLVSHPNKIFSKANLE 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y  FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 182 DKLYD-FDSEVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 222


>gi|261417769|ref|YP_003251451.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319767418|ref|YP_004132919.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374226|gb|ACX76969.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317112284|gb|ADU94776.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G       + + EE L   ++  V A+   ++   +    
Sbjct: 7   LIVDDEEEMRLLVGMYLENAGFRC--LEAGDGEEALVLLSQHPVDAVLLDVMMPKQDGFA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +   IR  S VP++ ++        +     G DD + KP    E++AR+ A+ RR++  
Sbjct: 65  VCARIREQSDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ R + G + +   GR   V G+   L  +E  +L +L  +RG+  ++  +   ++G
Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGKPVKLTLKEFELLLFLAKHRGQVFSRDDLLVKVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D       V++H+  LR KL++      + +   +GY  +
Sbjct: 185 -YDYTGNARTVDTHVKTLRMKLKDA--ARHIQTVWGIGYKFE 223


>gi|111025331|ref|YP_707751.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110824310|gb|ABG99593.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 230

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +          +G  +    + E   W  +    DV  ++  L   G    E
Sbjct: 4   LVVEDEARLASVVRRGLELEGFVVVTAATGEDGLWRATEDTFDVIVLDIMLP--GMNGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++         D FD G DD + KP     ++AR+ A+ RR   
Sbjct: 62  IVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRGAP 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +       G + +    R      E   L  RE  +LE+L+ +    + K  I   ++  
Sbjct: 122 ARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRHPDTALTKGVILRNVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                +EN+VE +I  LR+K+    G   +D+ R +GY +
Sbjct: 182 H-YDGDENIVEVYIGYLRRKIDAPFGAHTIDTVRGVGYRL 220


>gi|257413137|ref|ZP_05591538.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257204550|gb|EEV02835.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 234

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 97/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + + EE L+     +V  +   ++      +
Sbjct: 8   ILVCDDDKEIVEAIEIYLQQEGYHI--LKAYDGEEALEILKENEVHLLIMDVMMPRLDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 66  RATLKIREESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQ 125

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N AE        G + +  D ++  V GEV  L   E  IL  L+ N+GK  +  QI+
Sbjct: 126 LGNAAESSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIY 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            +I+   D    +N V  HI  +R+K+  N      +     +GY ID N
Sbjct: 186 ESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 234


>gi|194292202|ref|YP_002008109.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czccba [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226106|emb|CAQ72053.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Cupriavidus
           taiwanensis LMG 19424]
          Length = 229

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++                 D+  ++  L   G    
Sbjct: 3   ILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P++ ++    L   L   + G DD + KP    E++ R+  I RR  +
Sbjct: 61  EVLRELRRERDTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGPL 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E   +++ +  R     G+   L  +E  +L  L   RG+ ++++ I S ++ +
Sbjct: 121 RESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + ++R +GY +D
Sbjct: 181 -NFDSNTNVVDVSIRRLRAKVDDPFPRKLIHTRRGMGYVLD 220


>gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu012]
 gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu012]
          Length = 240

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +           R D   ++  +   G     
Sbjct: 17  LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMP--GMDGFG 74

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 75  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N      R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++  LR+K+ +      + + R +GY +
Sbjct: 195 VW-RYDFGGDVNVVESYVLYLRRKI-DTGEKRLLHTLRGVGYVL 236


>gi|221134973|ref|ZP_03561276.1| response regulator in two-component regulatory system with PhoQ
           [Glaciecola sp. HTCC2999]
          Length = 224

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 109/221 (49%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + +      L    G S++  +  E  ++L      D   ++  +       +
Sbjct: 3   ILLVEDDSQLLMQLDQLLQQAGFSVDLADDGEKAQYLLKEYTYDAVVLDLGIPKV--DGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +  R +  + P+  ++   + +  +   D+G DD + KP HH+E+LARV A+ RR  
Sbjct: 61  SVLKFARENDIKTPVCILTARDTWEQKVLGLDAGADDYLTKPFHHQELLARVNALIRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GPI++    +  ++  +   L   E ++LEYLM NR K ++KT++   IY 
Sbjct: 121 GHASSELTCGPIQLHLTQQKVKIDDQELELTAYEYKVLEYLMLNRDKVISKTELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  + +LRKK+       P+++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFVGRLRKKIDPTNTLKPIETLRGRGYRL 220


>gi|116695586|ref|YP_841162.1| response regulator [Ralstonia eutropha H16]
 gi|113530085|emb|CAJ96432.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 229

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++                 D+  ++  L   G    
Sbjct: 3   ILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R     P++ ++    L   L   + G DD + KP    E++ R+  I RR  +
Sbjct: 61  QVLRELRRERDTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGPL 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E   +++ +  R     G+   L  +E  +L  L   RG+ ++++ I S ++ +
Sbjct: 121 RESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVV+  I +LR K+ +      + ++R +GY +D
Sbjct: 181 -NFDSNTNVVDVSIRRLRAKVDDPFPHKLIHTRRGMGYVLD 220


>gi|325123266|gb|ADY82789.1| two-component system, OmpR family, response regulator
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 219

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 13/222 (5%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D  ++ +  I L       +E  N+        +  + D+  ++  L       +++ 
Sbjct: 2   IEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPM--MDGMQVL 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--- 121
           + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  V   
Sbjct: 60  KQIRQRAATPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGVEAQ 119

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   ++G + +  +      +G+   L  RE  IL  LM++  K  +K  +   +Y
Sbjct: 120 LANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILVPLMSHPNKIFSKANLEDKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 180 D-FDSDVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 216


>gi|269139404|ref|YP_003296105.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|267985065|gb|ACY84894.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|304559300|gb|ADM41964.1| Transcriptional regulatory protein PhoP [Edwardsiella tarda FL6-60]
          Length = 224

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++   + +  ++       D++ ++  L   GE  +
Sbjct: 3   ILVVEDNNLLRHHLSVQMRELGHQVDAAENAKEADFFVREQSPDIAIVDLGLP--GEDGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R  R     +P++ ++   S Q  +   ++G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SMIRRWRSEQITLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P +     R+  V   +  L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIISMPPFQADLSRRELRVNETLIKLTAFEYTIIETLIRNSGKVVSKDALMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKKL+N+   D + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQNEYPGDVITTVRGQGYRFDV 222


>gi|220928585|ref|YP_002505494.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998913|gb|ACL75514.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 233

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 83/227 (36%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G      +          +    +  ++  L   G    
Sbjct: 7   ILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVG--GY 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR     P++ +S        +     G DD + KP    E+ ARV A  RR   
Sbjct: 65  EVLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLN 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           I +  D  + +V      L  +E  IL+  + N  K   K Q+F
Sbjct: 125 FSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +I+G  +   +EN V  HI +LR+K+  +      + +   +GY +
Sbjct: 185 KSIWGE-NYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKL 230


>gi|186475948|ref|YP_001857418.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192407|gb|ACC70372.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 228

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+  G      + G +++     +  E   ++    +  ++  L       +
Sbjct: 12  ILLVEDDDLIGSGLEVALRNAGFTVDWARDGQHAELALATTHYLLVILDLGLP--KLSGM 69

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +R   +++P++ ++   +    +   D+G DD + KP    E+++R  A+ RR +
Sbjct: 70  DLLKSLRLRGNEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRRSQ 129

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   E   + V    +     G   PL  RE  +L +L+ + G    + +I  ++YG
Sbjct: 130 GRGSELIEWRGLSVDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E VE N +E H+S LRKKL    G D + + R  GY +D
Sbjct: 190 -WHEEVESNAIEVHVSNLRKKL----GGDVIRTVRGFGYVVD 226


>gi|154247331|ref|YP_001418289.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161416|gb|ABS68632.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 236

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +              +   D+  ++  L   G   L
Sbjct: 7   ILIVDDDAEIRRLAGKFLREHGHKVTTAQDAREMREAMKAGPVDLIILDIMLP--GASGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP+I ++   S    +   + G DD ++KP + RE+LAR+ A+ RR++ 
Sbjct: 65  DLCRDIRRTSSVPIIMLTARGSDVDRIVGLELGADDYLSKPFNPRELLARIHAVLRRMRP 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-------VFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S   A  G +  F+       + E       V  L   E  +L   + +  + + + Q+ 
Sbjct: 125 SGGAATGGSLLNFAGWTLDTRRRELTNPAAVVVDLSTGEYDLLLTFLEHPQRVLTRDQLM 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            A          +  ++  +S+LRKKL +  G + V + R  GY
Sbjct: 185 DAA-KNRTATGFDRAIDIQVSRLRKKLESHGGPEMVKTVRGAGY 227


>gi|119774679|ref|YP_927419.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767179|gb|ABL99749.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 224

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+         + G  ++  N+ +   +  ++   DV+ ++  L  +    +
Sbjct: 3   ILVVEDDPLLSHHLKVQLSELGNQVQVANTAQEGFYQATNYPIDVAIVDLGLPDQ--DGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL   +R A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  ELITRLRDAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R  +G + +    +   +  EV  +   E  ILEYLM +  + VAK ++   IYG
Sbjct: 121 GFVKPRITSGSLELDLAAKQVTLDSEVLEITAFEYLILEYLMRHSHEVVAKQRLLDVIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 181 --DKEGDPNTIEVMVSRLRKKLTRDGMDNPIVTIRGQGYKFN 220


>gi|309774783|ref|ZP_07669805.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917468|gb|EFP63186.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 236

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G  +  F +   +E L+ + RE +      ++      +
Sbjct: 5   ILVVEDEKGIREAIQIYLKNQGYHV--FLAENGQEGLEIANRETIHLAVVDIMMPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   IR     P+I +S        +   + G DD + KP    E+LARV +  RR   
Sbjct: 63  TMTMEIRKKYDFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRRYEQ 122

Query: 120 ------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                       K          + + S  ++  V      L  +E  ILE LM + G+ 
Sbjct: 123 ILLLKEHASSTLKSEEEIYCIDALTLNSTTKEVLVDDVPVKLRPKEFMILELLMKHPGRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +  QI+ A++   +EA+    V  HI KLR+K+  +      +     +GY I+
Sbjct: 183 FSAQQIYEAVWN--EEAINTETVMVHIRKLREKIELDPKHPRYLKVVWGIGYKIE 235


>gi|308067994|ref|YP_003869599.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305857273|gb|ADM69061.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 235

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +  +     +G SL    + + EE L +  R     +   L+      +
Sbjct: 5   ILLIEDDLSIAEMLLKALTKEGYSLT--TAYDGEEGLLAFKRHTYDLVLVDLMMPKVDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR HS VP++ +S   S          G DD V KP    E+ AR+ +  RR   
Sbjct: 63  EVIRRIRTHSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTT 122

Query: 122 SNN-----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             G +R+  D            L  +E  IL+  +AN  +   K
Sbjct: 123 YARQQQQEEQPQAQILTYGSLRIDFDHFIVIRNENEIQLTAKESDILKLFVANPNRVFTK 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            Q++  I+   D   +ENV+  HI +LR+K+  +      + +   +GY  +
Sbjct: 183 AQLYGFIW-KDDYMGDENVINVHIRRLREKIEKDPSHPVHIKTLWGIGYKWE 233


>gi|298291170|ref|YP_003693109.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927681|gb|ADH88490.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 219

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++          DG S +    ++      + A  D+  ++  L     + +
Sbjct: 3   ILLIEDDGVLGAAVRDQIVGDGHSADWVTRIDAARDAMAGAAYDLILLDLMLPD--GRGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA   V P+I ++    +   ++   +G DD + KP    E+ AR+ ++ RR  
Sbjct: 61  VFLRALRAAGNVTPVIILTALDQVSDRIEGLTAGADDYLVKPFDLDELSARIGSVARRYS 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N       + +    R    +G    L  RE  +LE  +A  G+ ++K Q+   +Y 
Sbjct: 121 GNPNPIIRHHSLDIDIARRSVRREGRPVQLTAREWALLEAFLARPGQVLSKAQLEEKLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E H+S+LRKKL    G D ++++R LGY +
Sbjct: 181 -FDAEVESNTIEVHVSRLRKKL----GADLIETERGLGYRL 216


>gi|239981817|ref|ZP_04704341.1| two-component system reponse regulator [Streptomyces albus J1074]
 gi|291453676|ref|ZP_06593066.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356625|gb|EFE83527.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  R  V  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRQ--DGPTALDAGLRGGVDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+    VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRSDGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 SNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +   T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPPQPTATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|224371346|ref|YP_002605510.1| two-component response regulator (OmpR-like protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223694063|gb|ACN17346.1| two-component response regulator (OmpR-like protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 226

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G  +   +  +       +    +  ++  L         
Sbjct: 7   LIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPR--LDGKT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120
           + R +R  S VP+I I+        +  F+ GVDD + KP   RE++ARV A+ RR   K
Sbjct: 65  VCREVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRRTFKK 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++    GP+++    R  E+ G    L   E  I   L+ +  +   + Q+   + G 
Sbjct: 125 SSDDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQLIEKVQG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++    E  ++ HI  LRKK+   L G   + S    GY I
Sbjct: 184 YNYDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKI 224


>gi|167754915|ref|ZP_02427042.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402]
 gi|237735356|ref|ZP_04565837.1| two-component system response regulator [Mollicutes bacterium D7]
 gi|167704965|gb|EDS19544.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402]
 gi|229381101|gb|EEO31192.1| two-component system response regulator [Coprobacillus sp. D7]
          Length = 233

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 18/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--AREDVSAIEAFLIGKGEK 59
            +++DD   +++    L      S EG++ +E ++  ++     +D+      ++     
Sbjct: 6   ILIVDDNPEIREVLNVLL-----SSEGYDVIEAKDGQEAIDMVSDDIDLYILDIMMPIIN 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             +    IR  S  P++ ++           F SG DD ++KP  + E+  RV A+ RR 
Sbjct: 61  GYQACVEIRKKSNAPILFLTAKGQESDKTLGFSSGGDDYLSKPFSYNELTTRVKALLRRY 120

Query: 120 KVSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            V   + E             I +  +     + GE   L   E +IL  L++NR +  +
Sbjct: 121 YVYQGKMEKEENNDDNIVYNNITINPNSEAVYLNGEQIELTYLEYQILYLLLSNRKRIFS 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
              ++ +I+         N +  HI  LRKK+  +      + +    GY 
Sbjct: 181 TQTLYESIWNEPYYYSANNTIMVHIRNLRKKIESDPQNPKIIKTIWGKGYR 231


>gi|166999354|ref|ZP_02265195.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|243064651|gb|EES46837.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 220

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G       +G +++   + +       +    +  ++  L  K    L 
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWAQNADAATLALRTTSYGLLLLDLGLPDK--DGLA 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +   +R     +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G +R+           E   L  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 122 RAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDTILTVRGVGYRI 216


>gi|148559307|ref|YP_001258597.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|225627111|ref|ZP_03785149.1| DNA-binding response regulator [Brucella ceti str. Cudo]
 gi|254701398|ref|ZP_05163226.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513]
 gi|254707679|ref|ZP_05169507.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10]
 gi|254709738|ref|ZP_05171549.1| DNA-binding response regulator [Brucella pinnipedialis B2/94]
 gi|254713741|ref|ZP_05175552.1| DNA-binding response regulator [Brucella ceti M644/93/1]
 gi|254717201|ref|ZP_05179012.1| DNA-binding response regulator [Brucella ceti M13/05/1]
 gi|254718753|ref|ZP_05180564.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|256031228|ref|ZP_05444842.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1]
 gi|256159331|ref|ZP_05457121.1| DNA-binding response regulator [Brucella ceti M490/95/1]
 gi|256254636|ref|ZP_05460172.1| DNA-binding response regulator [Brucella ceti B1/94]
 gi|256369043|ref|YP_003106551.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260168364|ref|ZP_05755175.1| DNA-binding response regulator [Brucella sp. F5/99]
 gi|261219017|ref|ZP_05933298.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261221811|ref|ZP_05936092.1| FeuP [Brucella ceti B1/94]
 gi|261315175|ref|ZP_05954372.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317269|ref|ZP_05956466.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261321483|ref|ZP_05960680.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261751937|ref|ZP_05995646.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261757824|ref|ZP_06001533.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99]
 gi|265983731|ref|ZP_06096466.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|265988307|ref|ZP_06100864.1| FeuP [Brucella pinnipedialis M292/94/1]
 gi|265997775|ref|ZP_06110332.1| FeuP [Brucella ceti M490/95/1]
 gi|306838729|ref|ZP_07471564.1| two component transcriptional regulator [Brucella sp. NF 2653]
 gi|306842126|ref|ZP_07474795.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306845210|ref|ZP_07477786.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|148370564|gb|ABQ60543.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|225617946|gb|EEH14990.1| DNA-binding response regulator [Brucella ceti str. Cudo]
 gi|255999203|gb|ACU47602.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260920395|gb|EEX87048.1| FeuP [Brucella ceti B1/94]
 gi|260924106|gb|EEX90674.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294173|gb|EEX97669.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296492|gb|EEX99988.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261304201|gb|EEY07698.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261737808|gb|EEY25804.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99]
 gi|261741690|gb|EEY29616.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262552243|gb|EEZ08233.1| FeuP [Brucella ceti M490/95/1]
 gi|264660504|gb|EEZ30765.1| FeuP [Brucella pinnipedialis M292/94/1]
 gi|264662323|gb|EEZ32584.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|306274369|gb|EFM56176.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|306287713|gb|EFM59144.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306406216|gb|EFM62460.1| two component transcriptional regulator [Brucella sp. NF 2653]
          Length = 229

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQ--MDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +  R  R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y 
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R +GY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGMGYRM 216


>gi|108799871|ref|YP_640068.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119868981|ref|YP_938933.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108770290|gb|ABG09012.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119695070|gb|ABL92143.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 263

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +        S      +      DV  ++  L   G   LE
Sbjct: 34  LVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGLP--GIDGLE 91

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR ++ 
Sbjct: 92  VCRQLRTFSDAYVVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRMR 151

Query: 123 ----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP+ +    R+  + GE   L R E  ILE L A  G  +++ Q
Sbjct: 152 PVAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRRQ 211

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   +         E++V+ HI  LR+KL  +      + + R +GY +
Sbjct: 212 LLDIVR-EGPWVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGYRM 259


>gi|21221504|ref|NP_627283.1| two-component system reponse regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787308|ref|ZP_05525739.1| two-component system reponse regulator [Streptomyces lividans TK24]
 gi|289771203|ref|ZP_06530581.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7672246|emb|CAB89435.1| putative two-component system reponse regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701402|gb|EFD68831.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 6/224 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    + +  +  +  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRE--DGPTAVDAGLQGGIDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+    VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRSEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +   T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPPQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
              +     ++ HIS LRKKL  +      + + R +G+  + N
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 225


>gi|17987620|ref|NP_540254.1| transcriptional regulatory protein PhoP [Brucella melitensis bv. 1
           str. 16M]
 gi|62289566|ref|YP_221359.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|82699496|ref|YP_414070.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|189023825|ref|YP_001934593.1| PhoP family transcriptional regulator [Brucella abortus S19]
 gi|225852129|ref|YP_002732362.1| winged helix family two component transcriptional regulator
           [Brucella melitensis ATCC 23457]
 gi|237815063|ref|ZP_04594061.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308
           A]
 gi|254688887|ref|ZP_05152141.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 6 str. 870]
 gi|254693368|ref|ZP_05155196.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 3 str. Tulya]
 gi|254697019|ref|ZP_05158847.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729918|ref|ZP_05188496.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 4 str. 292]
 gi|256044306|ref|ZP_05447210.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113143|ref|ZP_05454020.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis bv. 3 str. Ether]
 gi|256257135|ref|ZP_05462671.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 9 str. C68]
 gi|256264359|ref|ZP_05466891.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2
           str. 63/9]
 gi|260545673|ref|ZP_05821414.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC
           8038]
 gi|260563660|ref|ZP_05834146.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1
           str. 16M]
 gi|260754372|ref|ZP_05866720.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260757591|ref|ZP_05869939.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761417|ref|ZP_05873760.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883397|ref|ZP_05895011.1| FeuP [Brucella abortus bv. 9 str. C68]
 gi|261213618|ref|ZP_05927899.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|265990718|ref|ZP_06103275.1| FeuP [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994556|ref|ZP_06107113.1| FeuP [Brucella melitensis bv. 3 str. Ether]
 gi|297247981|ref|ZP_06931699.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|18418609|gb|AAL68973.1|AF007804_1 FeuP [Brucella abortus]
 gi|17983330|gb|AAL52518.1| transcriptional regulatory protein phop [Brucella melitensis bv. 1
           str. 16M]
 gi|62195698|gb|AAX73998.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|82615597|emb|CAJ10584.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Brucella
           melitensis biovar Abortus 2308]
 gi|189019397|gb|ACD72119.1| Transcriptional regulatory protein PHOP [Brucella abortus S19]
 gi|225640494|gb|ACO00408.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis ATCC 23457]
 gi|237789900|gb|EEP64110.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308
           A]
 gi|260097080|gb|EEW80955.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC
           8038]
 gi|260153676|gb|EEW88768.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1
           str. 16M]
 gi|260667909|gb|EEX54849.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671849|gb|EEX58670.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674480|gb|EEX61301.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872925|gb|EEX79994.1| FeuP [Brucella abortus bv. 9 str. C68]
 gi|260915225|gb|EEX82086.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|262765669|gb|EEZ11458.1| FeuP [Brucella melitensis bv. 3 str. Ether]
 gi|263001502|gb|EEZ14077.1| FeuP [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094652|gb|EEZ18431.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2
           str. 63/9]
 gi|297175150|gb|EFH34497.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
          Length = 229

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQ--MDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +  R  R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y 
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R +GY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGMGYRM 216


>gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306836868|ref|ZP_07469824.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227077162|gb|EEI15125.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304567240|gb|EFM42849.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 234

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +            +   NS      +      D   ++  +   G    E
Sbjct: 10  LVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRVAREVNPDAYILDVMMP--GMDGFE 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P++ ++    +   +     G DD V KP    E++ R+  I RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             + +  D  +    GE+  L   E  +L YLM N+   ++K++I   
Sbjct: 128 AEESSNDATMSYADLTLNDDTHEVTKGGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGDTQLIHTVRGVGYVL 229


>gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104]
 gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104]
          Length = 222

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +          +G  +    +        +    DV  ++  L   G    E
Sbjct: 4   LLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLP--GRSGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+++   P++ ++         D FD G DD + KP   R ++AR+ A+ RR   
Sbjct: 62  VLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGAP 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +       +       L  RE  +LE+LM N+   V K  I + ++  
Sbjct: 122 ERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + NVVE ++  LR+K+    G + +++ R +GY +
Sbjct: 182 HHHGPD-NVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220


>gi|19553806|ref|NP_601808.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391446|ref|YP_226848.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21325379|dbj|BAC00001.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326787|emb|CAF21269.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 235

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G ++   N       +    R D   ++  +   G    E
Sbjct: 12  LVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMP--GMDGFE 69

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 70  LLTKLRGEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGA 129

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++   +   + +  +  +    GE+  L   E  +L YLM N    ++K +I   +
Sbjct: 130 VEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKILDNV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES+IS LR+K+  +     + + R +GY +
Sbjct: 190 W-HYDFGGDGNVVESYISYLRRKVDTQ-DPQLIQTVRGVGYVL 230


>gi|299133554|ref|ZP_07026748.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591390|gb|EFI51591.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 239

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +     F + G   E     E    L  S   DV  ++  L  +    L
Sbjct: 16  LLIIEDDRESAEYLAKAFREVGHVAELAGDGEEGLALAQSGDYDVLVVDRMLPKR--DGL 73

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 74  SVIGTLREKGDTTPALILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 133

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G + +               L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 134 GPSEETSYRVGDLELDRLSHQVRRGTTEITLQPREFRLLEYLMKHAGQVVTRTMLLENVW 193

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 194 D-YHFDPQTNVIDVHISRLRSKIDKGQERPLLHTIRGAGYMI 234


>gi|228912374|ref|ZP_04076064.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228847229|gb|EEM92193.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
          Length = 214

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 99/219 (45%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++            +   +  +  E ++   ++    I   ++       E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVAS--DGLEGMKQFNKQSFDLILLDVMMPNLNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   + +
Sbjct: 60  KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N      + V SD     V     PL  +E  IL+ L+ N  K + +  I   I+G ++
Sbjct: 120 DNHFVFRELHVDSDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A +  ++++H+  +RKKL        + + + +GY ID
Sbjct: 179 YAGDTRMIDTHMKNIRKKLD----IPYIKTVKGIGYKID 213


>gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 223

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      +V  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALEKWNEGPNVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+     G I++    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKKEVTVSHEVIGAGEIKICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL N    + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLDC 223


>gi|228953050|ref|ZP_04115111.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229079910|ref|ZP_04212442.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228703494|gb|EEL55948.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228806668|gb|EEM53226.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 214

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++           ++   +  +  E +    ++    I   ++       E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQHYTVIVAS--DGLEGMTQFNKQSFDLILLDVMMPNLNGFEVS 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   K  
Sbjct: 60  KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  ++++HI  LRKKL        + + + +GY ID
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKID 213


>gi|223984078|ref|ZP_03634232.1| hypothetical protein HOLDEFILI_01524 [Holdemania filiformis DSM
           12042]
 gi|223963953|gb|EEF68311.1| hypothetical protein HOLDEFILI_01524 [Holdemania filiformis DSM
           12042]
          Length = 234

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + +       + G  +    +   +E L+  AR+ +      L+      L
Sbjct: 6   ILVCEDEVEIGNAIEIYLKNQGYGVH--RAYNGKEGLEVLARQTIHLAIVDLMMPVMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD + KP    E+LARV +  RR   
Sbjct: 64  TMIMTLRQSYDFPVIVLSAKSEDMDKITGLNMGADDYITKPFTPMELLARVNSQLRRYAK 123

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G + + +D ++  + G    L   E RIL+ LM N G+  +  
Sbjct: 124 FLSLKEHQSEDEQVYTVGGLELNNDTKEVSLDGNPVRLTPIEFRILQLLMKNPGRVYSAE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +I+  ++   +EA+  + V  HI  +R+K+  +      +     +GY I+
Sbjct: 184 EIYERVWN--EEAIATDTVMVHIRNIREKIEIDPRNPRYLKVVWGVGYKIE 232


>gi|170760898|ref|YP_001785689.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407887|gb|ACA56298.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 228

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 88/224 (39%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +   +    + E         + +V  ++  L   G   L
Sbjct: 4   ILIVEDEISIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLP--GVDGL 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R     + +I ++        +   + G DD + KP +  E+  R+ AI RR+ 
Sbjct: 62  EVCKTLRQEFPNMGIIMLTAKSQDIDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  +N    GP ++    +      E   +   E  +++  + N GK   + ++   
Sbjct: 122 AVKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           ++G +D   +  +V+ +I +LR K+         + +    GY 
Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224


>gi|42518843|ref|NP_964773.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|41583129|gb|AAS08739.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
          Length = 236

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 105/233 (45%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSS-AREDVSAIEAFLIGKGEK 59
            ++++D   V +     F  +   ++   + +E  E  +++ +  D+  ++  L  K   
Sbjct: 4   ILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKANPSSYDIVTLDLNLPKK--D 61

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +E+ + IRA S  +P+I ++   S    +     G D+ V KP     ++AR+ A+YRR
Sbjct: 62  GMEVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRR 121

Query: 119 LKVSNN---------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRV 168
             +  +            T  +++  D R+     +V   L  +E  +L  +     +  
Sbjct: 122 SHLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVF 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ ++   ++G ++   EE  V++HI KLR+KL  K G   V +   +GY  D
Sbjct: 182 SRDKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232


>gi|67920570|ref|ZP_00514090.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67858054|gb|EAM53293.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 246

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++D         G  ++        + L    + D+  ++  L        
Sbjct: 4   ILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     S +P++ +S     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDDRTSDIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +         L   E  +L  L+   G+ V+ ++
Sbjct: 122 TDRIPQAAKHSEILNYGPLTLIPERFEAICFENTVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILKEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLE 230


>gi|228926973|ref|ZP_04090039.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832708|gb|EEM78279.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKV--FSAYNGEEALEIINNNSIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P+I +S   S    +  F +G DD + K     E +ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKLFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A + +     +I
Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|254391635|ref|ZP_05006833.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326441458|ref|ZP_08216192.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705320|gb|EDY51132.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E          L++     V  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPAA--LEAGLAGGVDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               A  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|322804927|emb|CBZ02486.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 227

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++I+D   + D  ++    DG  ++G F + + ++ L      D+  ++  L    E   
Sbjct: 6   LVIEDEISINDILVSALRADGYKVKGVFLAKDAKDAL-DFFHPDLVLLDINLPD--ESGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R I     +P+I ++    +   +   + G DD + KP + +E+L RV    RR+  
Sbjct: 63  ELCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVNK 122

Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +++   I      +V  +GR      E   L  +E  +LE+ + NR    ++  + +
Sbjct: 123 YKEKSDEEFIYINKFVKVNLEGRIVFKDDEEVKLKPQEYELLEFFVKNRNIVFSREILLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G FD   E   V+ H+ +LR KL  +     +D+   +GY +
Sbjct: 183 KVWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTAFGIGYVM 226


>gi|239627112|ref|ZP_04670143.1| DNA-binding response regulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239517258|gb|EEQ57124.1| DNA-binding response regulator [Clostridiales bacterium 1_7_47FAA]
          Length = 230

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +G    F   G   +   +L+  E + S  + D+  ++  L        
Sbjct: 6   ILLLEDDLSLINGLAFAFRKQGFETDIARTLDEAEKIWSDGKYDLLILDVSLPD--GSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +  +++R  S+VP+I ++        +   D G DD + KP     +++R+ A+ RR+K 
Sbjct: 64  DFCKMVRLVSKVPVIFLTASDEETNIIMGLDMGGDDYITKPFKLGVLVSRINALLRRVKD 123

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    ++  IRV          G++  L   E ++L   M N    ++K +I   ++
Sbjct: 124 FGTAGTELQSNGIRVLLLQGQVYKNGDLLELTAAEYKLLCLFMQNPNTVLSKEKILDKLW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
                 ++ N +  +I +LR K+ +       + + R +GY   WN
Sbjct: 184 DCEGSYIDNNTLTVYIRRLRMKVEDNPGEPQMILTVRRMGYK--WN 227


>gi|229108261|ref|ZP_04237882.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228675174|gb|EEL30397.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 225

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|226312547|ref|YP_002772441.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095495|dbj|BAH43937.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+ ++++       D+G  +    + +  + L      +V  I   ++       
Sbjct: 5   ILIVEDQQVLREIMKEYLMDEGYEV--LEAGDGSQALTLFQEHEVHLIILDVMLPELDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RRL 119
            + R IR  S VP++ ++       TL  F+ G DD V KP     +LAR   +   R++
Sbjct: 63  SVCRRIRKVSNVPILMLTARSDEDDTLLGFELGADDYVVKPCSPPILLARSKRLLENRQM 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G I +    R   ++G+ + L   E  IL YLM N+G  +++ Q+   I+G
Sbjct: 123 HEPGDMLSGGGITIHLPSRTVSIEGKNYSLTHTEYEILAYLMKNKGIILSREQLIIKIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E+  + SH+  LR KL +      + +    GY  +
Sbjct: 183 -YDFIGEDRTLSSHVRNLRSKLGDH--AKHIVTVVRSGYKFE 221


>gi|78222245|ref|YP_383992.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193500|gb|ABB31267.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 224

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++   ++     E   ++  +   D   ++  L       L
Sbjct: 3   ILIIEDEKRMAGILKKGLEENAFIVDLAGDGEEGLYMAENYPYDAVLLDIMLPV--MDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R   S+VP++ I+    +++ +   + G DD + KP    E+LAR+ ++ RR K
Sbjct: 61  SILSALRSKRSEVPVLLITARGEIESRIKGLNFGADDYIVKPFDFHELLARLKSVIRRSK 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +       + + ++ R     G    L   E  +LEYL  N G+ +++T++   IY 
Sbjct: 121 GRPSPLVAIDDLSLDTNSRSVCRGGREIRLSATEYNLLEYLALNSGRVISRTELTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV++ +++ LR KL        + + R  GY +
Sbjct: 181 T-DFDRDSNVIDVYVNHLRNKLDKGFDRQLIHTVRGAGYIL 220


>gi|17158720|ref|NP_478231.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134669|dbj|BAB77227.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 231

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 98/228 (42%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKV 60
           +L++D   +              ++   +  +   +L+    +  ++  +  L   G   
Sbjct: 4   LLVEDEPDLGAAIKRTLTQQKYLVDWVLDGNDAWAYLENQWTQYTLAIFDWMLP--GISG 61

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL + +R   S +P++ ++    ++  +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LELCKRLRYRQSPLPVLMLTAKDRMEDKVTGLDAGADDYLVKPFGMAELLARLRALQRRS 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +        G + +         Q      +   L  +E ++LEY M +  + V   QI
Sbjct: 122 PQFQPQELTVGNLTLDYGNNMVVSQNNTGKKQEISLTNKEFQLLEYFMKHPNQIVTTEQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++ +  E +  NVV + +  LR+KL N    + +++    GY ++
Sbjct: 182 RNQLWEVSAEPI-SNVVAAQMRLLRRKLTNSGCGNMIETLHGTGYRLN 228


>gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 219

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +         G   +  F+  E  + L+     D+  ++  L       
Sbjct: 4   ILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLEQEG-FDLILLDIMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR   ++P+I ++   + +  +    +G DD + KP    E+LARV  + RR +
Sbjct: 61  YELMDYIRPL-EIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRRCQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +R + G + +    R  + QG+   L  +E  +L  L+ N+   + +  I+  I+G 
Sbjct: 120 KTESRLKEGDLEIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKIWGS 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                +   V+ H+ +LRKK+  +     + +   +GY ++
Sbjct: 180 G-YMGDSRTVDLHVQRLRKKIGWEHK---IKTVYKVGYRLE 216


>gi|283785895|ref|YP_003365760.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282949349|emb|CBG88960.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 240

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLIDHGDRVLPWVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ V         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQMDAESPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL         + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWEAD 235


>gi|255282006|ref|ZP_05346561.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM
           14469]
 gi|255267325|gb|EET60530.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM
           14469]
          Length = 247

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G ++    ++   E L+ +   D + I   ++  G   L
Sbjct: 11  ILVVEDEEKLARFVELELVHEGYTVS--KAVNGREALEIALSGDFALILLDIMLPGLNGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
           E+ R ++     P+I ++   ++   +   D+G  D + KP    E+LAR+         
Sbjct: 69  EVLRRLQQEKPTPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGD 128

Query: 117 -RRLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            RR        ET     G +++          G    L  RE ++L+ L+ N+   + +
Sbjct: 129 TRRSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTR 188

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + + + G +D   E NVV+ +I  LR K+        + + R +GY I
Sbjct: 189 EVLLNRVCG-YDYVGETNVVDVYIRFLRAKIDEAFQIKMIQTVRGVGYVI 237


>gi|206580423|ref|YP_002239584.1| transcriptional regulatory protein BasR [Klebsiella pneumoniae 342]
 gi|288936427|ref|YP_003440486.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290510517|ref|ZP_06549887.1| transcriptional regulatory protein basR/pmrA [Klebsiella sp.
           1_1_55]
 gi|206569481|gb|ACI11257.1| transcriptional regulatory protein BasR [Klebsiella pneumoniae 342]
 gi|288891136|gb|ADC59454.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289777233|gb|EFD85231.1| transcriptional regulatory protein basR/pmrA [Klebsiella sp.
           1_1_55]
          Length = 223

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D AL+  G I     +G   +G ++        +S    +  ++  L    E  L
Sbjct: 3   ILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNHYSLIVLDLGLPD--EDGL 60

Query: 62  E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L R+ R     P++ ++   +L+  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLTRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N    G +R+    R   +      L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGDNEISVGDLRLNVTRRLVWLGETALELTPKEYALLSRLMMKAGSPVHREILYNDIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     N +E HI  LR+K+    G   + + R  GY +
Sbjct: 180 SWDNEPATNTLEVHIHNLREKI----GKSRIRTVRGFGYML 216


>gi|162149190|ref|YP_001603651.1| two component transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545067|ref|YP_002277296.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787767|emb|CAP57363.1| Two component Transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532744|gb|ACI52681.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 258

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G  +    +         S   DV  ++  L       L 
Sbjct: 38  LLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPE--MDGLT 95

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P++ +S   ++   +    +G DD + KP    E+ AR+ A+ RR   
Sbjct: 96  LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +       GP+ +    R     GE   L  RE R+LEYLM    + + +T +   ++  
Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWN- 214

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    + N+V+ HI KLR+K+ +      + S R  G+ +
Sbjct: 215 YRFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFML 254


>gi|194467366|ref|ZP_03073353.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194454402|gb|EDX43299.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 226

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D   +    I     +G  +      +  E L+    +D++ I    +      
Sbjct: 5   VIMLVEDEESLASFLITELELEGYEVIWAK--DGREALEIFKEKDITLILLDWMLPIYDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R IR  S VP+I I+            D G+DD + KP    E+LAR+  + RRL 
Sbjct: 63  LTVLRRIRQSSNVPIIMITARSQTSDISMALDQGLDDYITKPFEIEELLARIRVVLRRLG 122

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +  P  +        V G+   L  +E  ++  L+   G    +  + + I
Sbjct: 123 QKKAEKYDYKFRPFEINLLKHQFMVDGKRVHLTPKEFSLMVALIKEPGVVQTRDDLLNEI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D   + N V+ +I  LR KL      D + + R +GY +
Sbjct: 183 WG-YDFDGQTNTVDVYIRALRNKLGKY--RDLIKTVRGIGYVL 222


>gi|332531744|ref|ZP_08407629.1| copper-sensing two-component system response regulator CpxR
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038720|gb|EGI75162.1| copper-sensing two-component system response regulator CpxR
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 229

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  ++  +  E    L  +    +  ++  L        
Sbjct: 3   LLMIDDDTGLCELLSEYLTAQGFEIQSVHDGEQGLKLAQANDYALILLDVMLPT--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R     P+I ++        +   + G DD + KP +HRE+LARV AI RR++ 
Sbjct: 61  EVLKQLRQTKLTPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIEH 120

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       ++     I V    R+  + G    L   E  IL  L  N G+ V+K QI 
Sbjct: 121 INSLNVATTSKLLVNGITVNLAAREASIDGSTLTLTGTEYEILTLLCKNAGEVVSKEQIS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + G    + +   ++ H+S +RKK+   +  + + + R  GY  
Sbjct: 181 EEVLGRRLASFD-RSIDMHVSNIRKKIAEHIPGERIKTMRGTGYVF 225


>gi|330810260|ref|YP_004354722.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378368|gb|AEA69718.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 233

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   +    +G  +   +  +           D+  ++  L   G   L
Sbjct: 4   ILLVEDDTALSELIASYLERNGYQVSVLSRGDHVRERARVDPPDLVILDLMLP--GLDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++RA S   P++ ++        +   + G DD V KP   R +LARV  + RR  
Sbjct: 62  QVCRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           ++     N+R   G + +    R    +G+   L   E  +L  L  + G+ +++ QI  
Sbjct: 122 LTEPQTVNDRIVMGNLCIDLSERTVTWRGQAVELSSGEYNLLVVLARHSGEVLSRDQILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
            + G+ +    +  V+  ISKLR+K  +       + +    GY
Sbjct: 182 RLRGI-EFNGTDRSVDVAISKLRRKFDDNADEARKIKTVWGKGY 224


>gi|302381998|ref|YP_003817821.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192626|gb|ADL00198.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 223

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A      +    + G ++       +          DV  ++  +       +
Sbjct: 3   ILVVEDDAEAAQAMVRGLTEGGHTVSHAIDGAYGLLEAQKGEYDVYVVDRMMPR--LDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P++ +S    ++  +    +G DD + KP    E++ARV A+ RR +
Sbjct: 61  GMVETLRKDGDQTPVLFLSAMGEVEDRVVGLKAGGDDYLVKPYAFAELIARVEALSRRRE 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +    R          L  RE ++LE+LM + G+ V +T +   ++
Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRGTSEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +    + NV++ HIS+LR K+        + + R  GY ++
Sbjct: 181 -EYHFDPQTNVIDVHISRLRSKIDKGFDRAMLQTVRGAGYRLE 222


>gi|229075211|ref|ZP_04208205.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|228707988|gb|EEL60167.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 225

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIMMPFV--DGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|138895944|ref|YP_001126397.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248835|ref|ZP_03147535.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267457|gb|ABO67652.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211711|gb|EDY06470.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G       + + +E L   AR  V AI   ++   +    
Sbjct: 7   LIVDDEEEMRLLVSMYLENAGFCC--LEAGDGDEALTVLARRSVDAILLDVMMPNQDGFS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   IR  S VP++ ++        +  F  G DD + KP    E++AR+ A+ RR    
Sbjct: 65  VCARIREQSDVPILFLTALGEEWDKVKGFKLGGDDYIVKPFSPGELIARLEAVLRRTWRG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  + + + G + +   GR   V  E   L  +E  +L +L  + G+  ++  +   ++G
Sbjct: 125 RERDGQLQFGNLAIDEKGRKVTVGSEPVRLTLKEFELLLFLAKHHGQVFSRDDLLVNVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D       V++H+  LR KL++      + +   +GY  +
Sbjct: 185 -YDYTGNARTVDTHVKTLRMKLKDAG--RYIQTVWGIGYKFE 223


>gi|16131939|ref|NP_418537.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. MG1655]
 gi|89110834|ref|AP_004614.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. W3110]
 gi|170083565|ref|YP_001732885.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. DH10B]
 gi|238903221|ref|YP_002929017.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli BW2952]
 gi|34395951|sp|P30843|BASR_ECOLI RecName: Full=Transcriptional regulatory protein BasR
 gi|536957|gb|AAA97012.1| basR [Escherichia coli str. K-12 substr. MG1655]
 gi|1790552|gb|AAC77074.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. MG1655]
 gi|85676865|dbj|BAE78115.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K12 substr. W3110]
 gi|169891400|gb|ACB05107.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. DH10B]
 gi|238860857|gb|ACR62855.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli BW2952]
 gi|260451058|gb|ACX41480.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|315138669|dbj|BAJ45828.1| DNA-binding transcriptional regulator BasR [Escherichia coli DH1]
 gi|323380500|gb|ADX52768.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
          Length = 222

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +   +    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYMLVAN 219


>gi|94310118|ref|YP_583328.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353970|gb|ABF08059.1| two component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 266

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       D+   +   +S +  E L+   +    A+   L+  G   L
Sbjct: 26  ILLVEDDVGIANVLAMHLRDERYEV--VHSADGAEGLRLLEQGGWDALVLDLMLPGVDGL 83

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R  RA ++  P+I  S   S    +   + G DD + KP    E++ARV A+ RR  
Sbjct: 84  EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVE 143

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                ++      E   + +    R+  V G+   L  RE  +L Y   +  K  ++  +
Sbjct: 144 AMARDVRADAGSLELAGLAIDPLAREAAVDGKRLDLTPREFDLLYYFARHPDKVFSRMDL 203

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +A++G +     E+ V +HI++LR K+  +      + +    GY  
Sbjct: 204 LNAVWG-YQHEGYEHTVNTHINRLRTKIEVDPAQPKRILTVWRRGYRF 250


>gi|309779354|ref|ZP_07674116.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|308921912|gb|EFP67547.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 244

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 15/228 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-----SSAREDVSAIEAFLIGKG 57
           +L++D  ++ D        DG +++     E           +SA    +  +  L+  G
Sbjct: 4   LLVEDDDMIGDSVRKGLRHDGFAIDWVRDGEAAVHAVTAPGAASAESGSTLFDLMLLDLG 63

Query: 58  E---KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ R +R     +P++ ++   ++   +   ++G DD + KP   +E+ AR+ 
Sbjct: 64  LPKRDGLDVVREVRQRGIAIPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAARMH 123

Query: 114 AIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR     +     G + +    R+    G    L  RE  +L  L+A  GK  +  Q
Sbjct: 124 ALLRRQGGRADPLMRHGEVLLNPVTREVLRAGVPVKLSGREFAVLHALLARPGKVWSIAQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +YG +DE V  N VE +I  LRKKL +      + + R +GY I
Sbjct: 184 LQDNLYG-WDEEVGSNTVEVYIHALRKKLGSHF----IQNIRGVGYVI 226


>gi|315506484|ref|YP_004085371.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315413103|gb|ADU11220.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 238

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V D        DG  +    S +  + L ++  E    +   L+  G   +E
Sbjct: 12  LVVDDDRTVSDVVRRYLEQDGCRVR--LSFDGPDALAAAEEEPPDLVVLDLMMPGLDGIE 69

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R     +P++ ++        +   + G DD V KP   RE++ R+ ++ RR   
Sbjct: 70  VCRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAP 129

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +         G +   +D R  E  G+   L  RE  +L +L+AN G+  ++ ++   +
Sbjct: 130 QDRGPTGVLRDGDLTADTDRRVAERGGQPLSLTVREFDLLAFLLANPGRAWSRAELLDRV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G      +++ V  H+ +LR+K+ ++      + +   +GY  +
Sbjct: 190 WGW--RFGDQSTVTVHVRRLREKIEDRPAQPRRIVTVWGVGYRYE 232


>gi|251787958|ref|YP_003002679.1| DNA-binding transcriptional regulator BasR [Dickeya zeae Ech1591]
 gi|247536579|gb|ACT05200.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 232

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL+++G +    ++G   +  ++ +  + L +SA   +  ++  L    E  L
Sbjct: 3   LLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPD--EDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L  R  R H Q P++ ++   ++   +   D G DD + KP    E  ARV A+ RR +
Sbjct: 61  TLLGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S++       I +  + +   +  +   L  +E  IL  L+   G +V +  +   +Y 
Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+    N +E HI  LR+K+    G + + + R  GY +
Sbjct: 180 SWDDDPSSNSLEVHIHNLRQKI----GKNRIKTLRGFGYLL 216


>gi|229522924|ref|ZP_04412338.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229340141|gb|EEO05149.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 224

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHV--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + IRA    V ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|167616629|ref|ZP_02385260.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257143130|ref|ZP_05591392.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 220

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G       +G +++   + +       +    +  ++  L  K    L 
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDK--DGLA 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +   +R     +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G +R+          G+   L  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 122 RAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDTILTVRGVGYRI 216


>gi|120401218|ref|YP_951047.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954036|gb|ABM11041.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 244

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+          G  +    + +    L SS   D   ++  +       + 
Sbjct: 22  LMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPE--LDGVA 79

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA  + +P+  +S   ++   +   ++G DD + KP    E++AR+ A+ RR   
Sbjct: 80  VVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHH 139

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+  ++T   G + + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++
Sbjct: 140 SDPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVW 199

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D  V+ NV +  +S LR+KL  +     + + R +GY +
Sbjct: 200 G-YDFDVDTNVADVFVSYLRRKLEREGLPRVIHTVRGIGYVL 240


>gi|293375797|ref|ZP_06622067.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292645574|gb|EFF63614.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 228

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  LV D   A    +   +  F +    E L    +E +  +   L+    K  
Sbjct: 3   ILLIEDEVLVLDALKAYLEREQYRV--FVATTGNEGLTIFEKEKIDFVILDLMLPDMKGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IRA S V L  ++   SL+  +   + G DD + KP   RE++AR+  + RR+  
Sbjct: 61  EICQQIRAISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRMNG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N  + G + +    R  +VQ E+ P    E  +L  LM N+GK + + Q+ + I 
Sbjct: 121 PLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQIL 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G FD    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 181 G-FDFNGYDRTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGYKF 222


>gi|149190294|ref|ZP_01868568.1| transcriptional activator protein IrlR [Vibrio shilonii AK1]
 gi|148835901|gb|EDL52864.1| transcriptional activator protein IrlR [Vibrio shilonii AK1]
          Length = 227

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G +++         +L ++   D+  ++  L        
Sbjct: 3   LLVIEDEEKAGAYLKKGLIESGYTVDLSTDGVDALYLATTNDYDLIVLDIMLP--KLNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +R+     P+I +S    ++  +   + G +D + KP    E+LARV    R   
Sbjct: 61  QLLQTLRSSDIPTPVIILSAKDQVEDRVKGLELGANDYLVKPFAFIELLARVKNALRHQT 120

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S    +      + +    R      +  PL  +E  +LEYL A RG+ V +TQI SA+
Sbjct: 121 TSIKTESVLCIADLSLDLLKRKATRNNDTIPLTAKEFSLLEYLFAKRGQVVTRTQIASAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + +   + NV+++ + +LR K+        + + R +GY +D
Sbjct: 181 WDM-NFDSDTNVIDAAVKRLRSKIDKPYQIKLIQTVRGMGYKLD 223


>gi|172062381|ref|YP_001810032.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria MC40-6]
 gi|171994898|gb|ACB65816.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MC40-6]
          Length = 223

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPE--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR  +
Sbjct: 61  EVLRRLRAQKQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  +   + V    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NARDFLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|154492299|ref|ZP_02031925.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
           43184]
 gi|154087524|gb|EDN86569.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
           43184]
          Length = 225

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  +   N  +     +   +ED   +   +I      L
Sbjct: 4   ILLVEDEINIASFIERGLQEFGHEVRVANDGQA--GWELVQQEDFQLLILDIIMPKMNGL 61

Query: 62  ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L +  R     Q P+I ++   +    ++  D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 62  QLCKQYRQTYGYQSPVIMLTALGTTDDIVNGLDAGADDYLVKPFSFQELEARIKALLRRT 121

Query: 120 KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +            V  L  +E R+LEYL+ NRG   ++  +   +
Sbjct: 122 GAEPAVPLLSCGDLTLDPSSHRAIRGKVVIDLTVKEYRLLEYLIRNRGTAQSRLTLLKNV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +     NVV+ +++ LR K+        + +   +GY ++
Sbjct: 182 WDK-NFDTNTNVVDVYVNYLRSKIDKDFDRKLIRTVVGVGYMME 224


>gi|255008379|ref|ZP_05280505.1| putative two-component response regulator [Bacteroides fragilis
           3_1_12]
 gi|313146101|ref|ZP_07808294.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
 gi|313134868|gb|EFR52228.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
          Length = 229

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 105/225 (46%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  ++  NS E    +  S+   +          G K+ 
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMNISSYHLLLLDVMMGEISGFKMA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +  +  +QVP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR   
Sbjct: 66  NILKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTAT 125

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S+      +     + +    +   + GE  PL ++E  IL  L+ N+G+  ++  I S 
Sbjct: 126 SDMEKVPEQLSYQSLVIDITKKKVSIDGEEVPLTKKEFEILFLLLQNKGRVFSREDILSR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+   +  V +  ++ +I++LRKK+   +    + ++   GY  +
Sbjct: 186 IW-SDEVYVLDRTIDVNITRLRKKIG--IYGKRIVTRLGYGYCFE 227


>gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304749|gb|EFQ80820.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 234

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +            +   NS      +      D   ++  +   G    E
Sbjct: 10  LVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRIAREVNPDAYILDVMMP--GMDGFE 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P++ ++    +   +     G DD V KP    E++ R+  I RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             + +  D  +    GE+  L   E  +L YLM N+   ++K++I   
Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGETQLIHTVRGVGYVL 229


>gi|183219817|ref|YP_001837813.1| transcriptional regulatory protein CreB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189909952|ref|YP_001961507.1| two component response regulator sensor protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167774628|gb|ABZ92929.1| Sensor protein of a two-component response regulator [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778239|gb|ABZ96537.1| Transcriptional regulatory protein CreB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 225

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++        +G SL    +    + LQ  A +D+S I   +    +   
Sbjct: 4   ILLIEDEPGIQETIQIALEAEGFSLSIAPT--GIQGLQMLA-DDISLILLDIGLPDQSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  + +P+I ++   S    +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 61  EVLKSIRKAASIPVIFLTARSSEIDKVLGLEIGADDYIVKPFSPRELLARIRAILRRTQN 120

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +     +R+  D +     G+   L   E + +E      G+   + +I  +++ 
Sbjct: 121 PLVLEQKSNQKLRISLDKKLVYYNGKNLNLSPYEYKTMELFFKWPGRIFTREEIMDSVWT 180

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +++ +   V++ I  +R + +     FDP++++R  GY +
Sbjct: 181 EPEDSFD-RAVDTVIKNIRARFKEMDPNFDPIETRRGQGYGL 221


>gi|22299453|ref|NP_682700.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22295636|dbj|BAC09462.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 229

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++I+D   +              +E  +++    ++L+++A  D+  ++  L   G   L
Sbjct: 4   LVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATA-FDLLILDLGLP--GMDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + IR     +P++ ++   +    +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 61  SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        G + +  D        +   L  +E  ILE L+ +  + ++++ I    + 
Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223
           L DE   E  V+ H+  LR KL+      + +++    GY ++ N
Sbjct: 181 L-DEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRLNPN 224


>gi|310780298|ref|YP_003968630.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749621|gb|ADO84282.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 220

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++          G  +      E    L      D++ ++  +        
Sbjct: 4   ILLLEDEDKMRKVVKNFLVKAGYEVIEACDGEEALELFYENTFDLAILDVMVP--KIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            + R IR  S++P+I ++   +    L  FD G D+ + KP   + +LARV  + +R   
Sbjct: 62  TICRKIRKESKIPIIMLTARSTEDDELFGFDLGADEYITKPFSLKILLARVKVLLKRKDT 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   N  + G + + S         E+  L  +E  +L  ++ N+   +++ +  + I+G
Sbjct: 122 KTEENSLKVGKLEIDSSSHRVIFFDEILDLTPKEYDMLLMMVENKDIAISRERFLNQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD   +   V++H+ +LRKKL+ K     + + R +GY  +
Sbjct: 182 -FDYYGDLRTVDTHVKQLRKKLKGKH----IKTVRGVGYRFE 218


>gi|227509360|ref|ZP_03939409.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227512243|ref|ZP_03942292.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227084521|gb|EEI19833.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227191072|gb|EEI71139.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 230

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDG---VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++I+D   +        G+     VS +GF      + L      D+  ++  L     
Sbjct: 6   ILIIEDDESLAQSLQLFLGEIAQTTVSHDGFEG----QMLGEEGIYDLVVLDLMLPQV-- 59

Query: 59  KVLELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              ++ +  R  S   +P++ ++   +L   +  F+ G DD + KP H  E+L RV A+ 
Sbjct: 60  NGYDILKHWRTESHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALL 119

Query: 117 RRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +R     ++N+    P  V    R   V+ +   L  +E  +L Y + N    + K QIF
Sbjct: 120 KRSGHLGNDNQMVVEPFTVDLSNRTVTVRDQQLELNGKEFDLLVYFLQNPDTIITKEQIF 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G F+     +VVE ++S LRKK++      P+ + R +GY  +
Sbjct: 180 DRLWG-FESETAISVVEVYMSNLRKKIKTATDLKPIKTLRNVGYMFE 225


>gi|206579174|ref|YP_002240684.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342]
 gi|290512113|ref|ZP_06551480.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55]
 gi|206568232|gb|ACI10008.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342]
 gi|289775108|gb|EFD83109.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55]
          Length = 227

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  ++  D+  ++  L        
Sbjct: 3   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDV--NGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++RA +  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R          L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|209546661|ref|YP_002278579.1| two component winged helix family transcriptional regulator
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537905|gb|ACI57839.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 234

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G+      +           + D+  ++  +       L
Sbjct: 5   ILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPD--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S +P++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 63  DVCRQIRKTSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKRSGN 122

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + +   GR          +   E  IL+ L++      ++ ++  
Sbjct: 123 EAEPERRRAIFVAGELSLDRQGRTVMFGDSAISMTVLEFAILDALLSRPDMVFSRERLME 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A YG     V +  ++SHI  +R K     G   + +   +G+ +
Sbjct: 183 AAYGAGTY-VADRTIDSHIRNIRAKFLAAGGQGIIATVHGIGFKL 226


>gi|90962136|ref|YP_536052.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90821330|gb|ABD99969.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 239

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 106/236 (44%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEF-EEWLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +   +E  ++ +   E++ + S   D+  ++  L   G  
Sbjct: 3   LLMIEDNKSVCEMMSMFFEKEKWDVEYAYDGISAVEKFKEKSDEWDMITLDLNLP--GMD 60

Query: 60  VLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++   IR   S VP+I ++   S    +   + G D+ V+KP     ++AR+ A++RR
Sbjct: 61  GMQVNAEIRKISSTVPIIILTARDSESDQILGLEMGADEYVSKPFSPITLIARIKALHRR 120

Query: 119 LKVS------------NNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            ++S            +   +T   ++ S  R+  +       L  +E  +L  L     
Sbjct: 121 AQISALGSSKQNKVDDDFDVKTDHFKLNSSTREAYLNDNRIDGLTPKEFDLLRVLAKKPR 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 181 QVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 234


>gi|78067449|ref|YP_370218.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77968194|gb|ABB09574.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 273

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 34  ILIAEDDSILADGLTRSLRQSGYAVDHVKTGVDADTALSMQTFDLLILDLGLP--KMPGL 91

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 92  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 151

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 152 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 211

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 212 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRISTVRGLGYCLE 250


>gi|300214840|gb|ADJ79256.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Lactobacillus salivarius CECT 5713]
          Length = 233

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 97/231 (41%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  ++  N+         + + D   ++  L   G   +E
Sbjct: 5   LVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLP--GIDGIE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR       ++ ++        +   + G DD + KP   REI+AR+ A+ RR++ 
Sbjct: 63  VTKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRRVEH 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++ +E         G   V  D  +       +  L  +E  +L Y +  +G+ + + +
Sbjct: 123 YSDNSEKDSKNKYYFGNYVVNLDSYELRDKNNNLIKLTPKEFELLVYFLRKKGRVLGREE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSID 221
           + + ++G FD   +  +V+ H+S LR+K+       P+   + R  GY  +
Sbjct: 183 LLNNVWG-FDYIGQTRMVDMHVSHLREKIEENP-KKPIFLKTVRGFGYRFE 231


>gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 236

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G ++   +       +    R D   ++  +   G    E
Sbjct: 12  LVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMP--GMDGFE 69

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           L   +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 70  LLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGS 129

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + ++       + +  +  +    GE+  L   E  +L YLM N    ++K +I   
Sbjct: 130 VESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKILDN 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+        + + R +GY +
Sbjct: 190 VW-HYDFGGDGNVVESYISYLRRKVDTH-EPQLIQTVRGVGYVL 231


>gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   N+      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEIDLILLDIMLPE--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++   
Sbjct: 62  EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + ++ +   +
Sbjct: 122 TVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|332703144|ref|ZP_08423232.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553293|gb|EGJ50337.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 231

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD A +          +G       + +       S   D   ++  L G G   +
Sbjct: 7   ILLIDDDADLGSMLTEYLAGEGFETTTILNGDTGAEAALSGAYDAVILDVMLPGLG--GV 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S++P+I ++        +   + G DD V KP + RE++AR+ A+ RR+  
Sbjct: 65  EVLRRVRQASRIPIIMLTAKGDHVDRIVGLEMGADDYVPKPCYPRELVARLRAVLRRMAD 124

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +        G +++    R     G+   L   E  +LE L+    + V+K ++   
Sbjct: 125 AGERPPGETLVQGKLKLLPPQRKVSWDGKPLDLTVSEFNLLEILLHEGDRVVSKDELSER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             G   E  +   V+ H+S LR+KL    G +  +++ R +GY +
Sbjct: 185 ALGRPREPYD-RSVDVHVSNLRQKLHAAAGDEICIETVRGIGYRV 228


>gi|313622522|gb|EFR92939.1| regulatory protein VanR [Listeria innocua FSL J1-023]
          Length = 231

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            ++ DD   + D       ++G ++  + + +  E   L    +  +  ++  +      
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTI--YQAYDGAEVWRLVQEKQPTLVILDIMMP--KMN 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R++R +    P++ +S        +    +G DD + KP +  E+  RV AI RR
Sbjct: 61  GLEVCRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++       VS ++   GPI V        V  +   L   E  IL  L +  G+  +  
Sbjct: 121 MQQMSQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            IF  I+           V  HIS LR KLR+   G + + +   +GY I+
Sbjct: 181 YIFEKIWQEK-ALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230


>gi|257790923|ref|YP_003181529.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474820|gb|ACV55140.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 220

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   +++    + G DG  +      E    L+   R D+  ++  +   G    
Sbjct: 4   ILAVDDDEAIRNLLGRVLGKDGHDVRCAACAEEVLALKLD-RYDLVLLDVMMP--GTDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR     P++ ++   S    +     G DD + KP    E+ ARVAA  RR + 
Sbjct: 61  ELCRAIRGSVDAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRARVAAHLRRERR 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G +R+    R+  V     PL + E  + E+L  + G+  ++ QI   + G 
Sbjct: 121 ERKHALSFGALRLDLASREAYVGEATVPLTKTEFDVCEFLARHPGQAFSRDQIVENVLG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +D     + +  H++  R KL+   G +P+D+   +GY 
Sbjct: 180 WDAESAASTISVHVANARAKLKAA-GAEPIDTVWGVGYK 217


>gi|221199407|ref|ZP_03572451.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2M]
 gi|221205690|ref|ZP_03578705.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2]
 gi|221174528|gb|EEE06960.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2]
 gi|221180692|gb|EEE13095.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2M]
          Length = 225

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 89/221 (40%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D           F + G  ++          L      DV  ++  L        
Sbjct: 3   ILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQKESYDVIVLDVMLPV--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +R     P++ ++    +       + G DD + KP    E+LARV  + RR   
Sbjct: 61  SVLKRLRDTHATPVMFLTARGDVHDRAHGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +    R  +       L  RE  +L+ L    G+ +++TQI S ++ +
Sbjct: 121 RETERLAVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR K+ +      + + R +GY+++
Sbjct: 181 -NFDSDTNVVEVAIRRLRAKVDDAFPLKLIHTVRGVGYALE 220


>gi|332968745|gb|EGK07795.1| response regulator [Psychrobacter sp. 1501(2011)]
          Length = 248

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        DDG  +   +     + L       +  ++  L   GE  +
Sbjct: 16  ILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLP--GEDGI 73

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + +R  +S +P+I ++   S    +   ++G DD + KP + +E+LAR+ A+ RR  
Sbjct: 74  SICKRLREDNSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHS 133

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E GP  +    R  +  G V  L   E  +L+ L+ +  + + + +
Sbjct: 134 RELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDK 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  +    E  ++  +S+LR+ + +       + +   +GY  
Sbjct: 194 LMNLARGR-EWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 241


>gi|330828446|ref|YP_004391398.1| putative transcriptional regulator [Aeromonas veronii B565]
 gi|328803582|gb|AEB48781.1| Putative transcriptional regulator [Aeromonas veronii B565]
          Length = 215

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D AL+ +        +G      ++L   E  Q     D+  ++  +  +G+ + 
Sbjct: 4   ILLVEDEALLAENLQRYLTREGYRCLWCDTLTAAE--QQWLAADLVLLDRTMP-EGDALD 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            LP+ + A   +P+I ++    +   +   D+G  D + KP  H E+LAR+ A  R  ++
Sbjct: 61  WLPQWL-ARKALPVIVLTARVEVSDRVAGLDAGARDYLTKPFSHDELLARIRAQLR--QL 117

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G +++         Q         E  +L  L+   G+ +++ +I + ++G +
Sbjct: 118 GDGTQAVGGLQLHPARMQASWQDAEVSFTPTEFALLTLLVRMAGRVLSREEILNRVWG-Y 176

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
                   V++HI +LR+KL        +++ R +GY ++ 
Sbjct: 177 QAFPSTRTVDTHILQLRQKLPGLA----IETVRGIGYRLEV 213


>gi|237801204|ref|ZP_04589665.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331024061|gb|EGI04118.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 227

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A+     +      G+ ++  ++         S   D+  ++  L       L
Sbjct: 4   ILAIEDDAITAKEIVTELNSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPE--MDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ IS    +   +    +G DD + KP    E+ ARV  + RR  
Sbjct: 62  TIVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSN 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + +    R+    GE   L   E ++LE+LM N G+ + +  IF  +
Sbjct: 122 PVSAAKTVLQVADLELNLITREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +      N+++ HI +LRKK+        + + R  GY I
Sbjct: 182 WG-YHFDPGTNLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|152996884|ref|YP_001341719.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837808|gb|ABR71784.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 226

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +   A     G      +  +       + + D+  ++  L   G   +E
Sbjct: 5   LIIEDEPKLAELMSAYLEQAGYEHHHLDRGDIAVNYIKNNQVDIVLLDLMLP--GLDGVE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++        L   + G DD V KP   REI+ARV A  RR+++ 
Sbjct: 63  ICKQVRQFSGVPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREIVARVKANLRRVELD 122

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +  T    +  D      +G++  L   E ++L+ L+   G+   +  I  +IY   
Sbjct: 123 QAESPRTDGFDLDVDRLRATYKGDLIDLTTVEFQLLQLLIKEPGRVFGRDLIMKSIY-AD 181

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
              V +  ++SHI KLRKK+       + + S    GY  + N
Sbjct: 182 SRVVSDRTIDSHIKKLRKKISAVAPELNVIHSVYGAGYRFENN 224


>gi|116493100|ref|YP_804835.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103250|gb|ABJ68393.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 240

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 110/243 (45%), Gaps = 35/243 (14%)

Query: 2   FVLIDDRALVKDG---------YIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEA 51
            ++I+D   V D          +   F  DG+ ++E F + + E+W       D+  ++ 
Sbjct: 3   ILMIEDNKSVSDMMGMFFKKERWNVTFVYDGLKAIETFKT-DPEQW-------DIVLLDL 54

Query: 52  FLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
            L   G+  +E+   +R  SQ +PLI ++   S    +   + G D+ + KP     ++A
Sbjct: 55  NLP--GKDGMEVAAELRRTSQSIPLIMLTARDSESDQVLGLEMGADEYITKPFSPITLIA 112

Query: 111 RVAAIYRRLKVSNNR-----------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILE 158
           R+ A+YRR+ +S                T  +++ +  R+  +  ++   L  +E  +L+
Sbjct: 113 RIKALYRRVSMSRETMTQGAQNAKFDVRTAHLKISTSTREVYLDEKLISDLTPKEFDLLK 172

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            L     +  ++ Q+   ++  ++   +E  V++HI KLR+KL   +G   V +   +GY
Sbjct: 173 TLAQKPMQVFSREQLLQIVWD-YEYYGDERTVDAHIKKLRQKLE-AVGPQVVQTVWGVGY 230

Query: 219 SID 221
             D
Sbjct: 231 KFD 233


>gi|110804550|ref|YP_688070.1| DNA-binding transcriptional activator CusR [Shigella flexneri 5
           str. 8401]
 gi|110614098|gb|ABF02765.1| putative 2-component transcriptional regulator [Shigella flexneri 5
           str. 8401]
          Length = 227

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + +R  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLQRGA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|87121077|ref|ZP_01076968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Marinomonas sp. MED121]
 gi|86163569|gb|EAQ64843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Marinomonas sp. MED121]
          Length = 214

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 95/213 (44%), Gaps = 11/213 (5%)

Query: 14  GYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA--- 69
                    G   LE  NS    E +    R D+  ++  +   G   +EL R ++    
Sbjct: 1   MIAIALEMAGYEYLEADNSRTAYEIIVDH-RPDLILVDWMMP--GGSGIELTRRLKKEAL 57

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAE 127
            +++P+I ++        +   ++G DD + KP   RE++AR+ A+ RR      +   E
Sbjct: 58  TAEIPVIMLTAKSEEDNKIQGLEAGADDYITKPFSPRELVARLKAVLRRAHPQGVDEPIE 117

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              +++    +   +  +   +   E R+L++L+ ++ +  ++ Q+   ++G  +  VEE
Sbjct: 118 VDGLKLDPLSQRVSIGSKPLEMGPTEYRLLKFLITHQERAYSRAQLLDQVWGG-NVYVEE 176

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V+ HI +LRK + +   +  + + R  GY  
Sbjct: 177 RTVDVHIRRLRKAIGDSHDY-LIQTVRGTGYRF 208


>gi|299768936|ref|YP_003730962.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
 gi|298699024|gb|ADI89589.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
          Length = 222

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +  I L       +E  N+        +  + D+  ++  L       +
Sbjct: 4   ILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDIILLDLGLPM--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  +  P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  V
Sbjct: 62  QVLKQIRQRAVTPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRTGV 121

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      + G + +  +      +G+   L  RE  IL  LM++  K  +K  +  
Sbjct: 122 EAQLANHEQLLQNGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y  FD  V  N +E ++  LR KL    G D + + R LGY +
Sbjct: 182 KLYD-FDSEVTSNTIEVYVHHLRAKL----GKDFIRTIRGLGYRL 221


>gi|290475733|ref|YP_003468622.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Xenorhabdus bovienii SS-2004]
 gi|289175055|emb|CBJ81858.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Xenorhabdus bovienii SS-2004]
          Length = 235

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I          +     +         + D+  ++  L   G   +
Sbjct: 10  ILIVEDEPKLGQLLIDYLQAADYQTQWLIRGDEVIAHVQKRQPDIILLDIMLP--GLDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR  +
Sbjct: 68  SICREIRRFSDVPIVMMTARTEEIDRLLGLEIGADDYICKPYSPREMVARVKTILRRCYR 127

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +  +E G + +  +         V  L   E R+L+ + +  G+  ++ Q+ + +Y  
Sbjct: 128 PQDIISEHGSLTIDENHFQARYLDRVLELTPVEFRLLKIMSSQPGRVFSRDQLLNNLYDD 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
               V +  ++SHI  LR+KL         + S   LGY  +
Sbjct: 188 H-RIVNDRTIDSHIKNLRRKLEQLDEDKSFIRSIYGLGYRWE 228


>gi|256380199|ref|YP_003103859.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924502|gb|ACU40013.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 13/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D   A    +G  +   +          +   D+  ++  L   G   LE
Sbjct: 6   LVVEDDPTIADSVAARLRAEGFEVLVAHDGPSGVGRALAEGPDLVVLDVMLP--GFDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R ++A   VP++ ++        L     G DD + KP   RE+ ARV A+ RR+   
Sbjct: 64  VCRRVQAQRAVPVLMLTARGEETDLLVGLAVGADDYLTKPFSLRELAARVHALLRRVDRE 123

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +NR   G + V    R     G    L   E ++L +L        ++ ++ S 
Sbjct: 124 RERGSRSNRIVLGDVEVDLGERRVLKGGSEVHLTPTEFQLLVHLAGRPRAVQSRERLLSE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++  + E      V+SH+  LR+KL    G   + +   +GY+++ 
Sbjct: 184 VWD-WPEGTSTRTVDSHVKALRRKL----GGGLIRTVHSVGYALEV 224


>gi|81300213|ref|YP_400421.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81169094|gb|ABB57434.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 229

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      +   +G  ++  +  +  E L +    D+  ++  L  +    L
Sbjct: 3   ILLVDDEEALTAPLHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPER--SGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R    QVP++ ++   ++   +   D+G DD + KP   +E+LARV A+ RR  
Sbjct: 61  DLCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRSP 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R   G + + +  +    QG    L  +E ++L  LM + G+ V+  ++ + 
Sbjct: 121 RQETSEAPRLAGGDLELDTPNQLAYRQGRRIELSEKETQLLAVLMQHPGQLVSHQELQAQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +     NV+ + I  LR+KL        + S    GY  
Sbjct: 181 VWGSAN-PPSSNVLAAQIRLLRRKLEAPGETPLIFSVYGKGYRF 223


>gi|15601325|ref|NP_232956.1| transcriptional regulator [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121591182|ref|ZP_01678486.1| transcriptional regulator [Vibrio cholerae 2740-80]
 gi|121728902|ref|ZP_01681910.1| transcriptional regulator [Vibrio cholerae V52]
 gi|147672319|ref|YP_001215339.1| transcriptional regulator [Vibrio cholerae O395]
 gi|153217413|ref|ZP_01951164.1| transcriptional regulator [Vibrio cholerae 1587]
 gi|153819256|ref|ZP_01971923.1| transcriptional regulator [Vibrio cholerae NCTC 8457]
 gi|153822842|ref|ZP_01975509.1| transcriptional regulator [Vibrio cholerae B33]
 gi|227812134|ref|YP_002812144.1| transcriptional regulator [Vibrio cholerae M66-2]
 gi|229506264|ref|ZP_04395773.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229509616|ref|ZP_04399098.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229513266|ref|ZP_04402731.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229516561|ref|ZP_04406008.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229523058|ref|ZP_04412470.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229526866|ref|ZP_04416270.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229527591|ref|ZP_04416982.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229605814|ref|YP_002876518.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254285176|ref|ZP_04960142.1| transcriptional regulator [Vibrio cholerae AM-19226]
 gi|254849726|ref|ZP_05239076.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|298499362|ref|ZP_07009168.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9657975|gb|AAF96468.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121546967|gb|EAX57114.1| transcriptional regulator [Vibrio cholerae 2740-80]
 gi|121628830|gb|EAX61291.1| transcriptional regulator [Vibrio cholerae V52]
 gi|124113573|gb|EAY32393.1| transcriptional regulator [Vibrio cholerae 1587]
 gi|126510205|gb|EAZ72799.1| transcriptional regulator [Vibrio cholerae NCTC 8457]
 gi|126519619|gb|EAZ76842.1| transcriptional regulator [Vibrio cholerae B33]
 gi|146314702|gb|ABQ19242.1| transcriptional regulator [Vibrio cholerae O395]
 gi|150425179|gb|EDN16956.1| transcriptional regulator [Vibrio cholerae AM-19226]
 gi|227011276|gb|ACP07487.1| transcriptional regulator [Vibrio cholerae M66-2]
 gi|227015384|gb|ACP11593.1| transcriptional regulator [Vibrio cholerae O395]
 gi|229333953|gb|EEN99438.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229337024|gb|EEO02042.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229339908|gb|EEO04918.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229346442|gb|EEO11413.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229349676|gb|EEO14631.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229353566|gb|EEO18504.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229356615|gb|EEO21533.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229372300|gb|ACQ62722.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254845431|gb|EET23845.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|297541343|gb|EFH77394.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 245

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 101/221 (45%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   +  ++    +  Q   + D+  ++  L   G+ V 
Sbjct: 32  LLLVEDDKNLADGLLVSLEQAGY--DCLHAETIADVKQHWDKADLVILDRQLPD-GDSVQ 88

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            L    +    +P+I ++   +++  +   D+G +D + KP    E+ AR+ A  R    
Sbjct: 89  HLMDW-KKIKDIPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRSPDS 147

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +++  T  + +    R+    GE   L R E  +L +L +N G+   + ++   ++G
Sbjct: 148 GQDDSKVVTSNLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDELLDHVWG 207

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 208 -YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 243


>gi|315504995|ref|YP_004083882.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315411614|gb|ADU09731.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 230

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +    DG  +                R DV  ++  L   G   +E
Sbjct: 6   LVVDDERSLAKVVASYLERDGHEVSCVFDGRSAVAAARRDRPDVVVLDLALP--GLDGIE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY------ 116
           + R IR  +   ++ ++        L     G DD + KP   RE++AR+ A+       
Sbjct: 64  VCRQIRTFTDCYVVMLTARSEEVDKLIGLGVGADDYLTKPFSPRELVARIRAMLRRPRAA 123

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    G +RV   GR+  V  +   L R E  +L  L A     + + Q+  A
Sbjct: 124 VAPAAEQSTRTVGGLRVDLAGREVYVDEQPVELTRTEFDLLAALSAQPDTALRRRQLIDA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++G  D   +E++V+ HI+ LR+KL  +  G   + + R +GY +
Sbjct: 184 VWGA-DWVGDEHLVDVHIAHLRRKLGDDPAGPRFIRTVRGIGYRM 227


>gi|227328253|ref|ZP_03832277.1| two-component system response regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 226

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G S      L  +E +  +   D +A+   ++      +
Sbjct: 3   ILLVDDDVELGDMLCEYLNAEGFSTS--RVLTGKEGVDGATSGDYTAMILDVMLPDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR   Q+P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 61  DVLRQIRKTQQLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYDD 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K   + A +G + +    R  E +G+ F L   E  +LE L+ +  + V+K ++  
Sbjct: 121 QPSTKRDESLAASGDLVLNPATRISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELSE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 KCLGRRREAYD-RSVDVHISNIRQKLGVLPGNTMTIETVRSVGYRI 225


>gi|297200162|ref|ZP_06917559.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197713388|gb|EDY57422.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  +  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGMQGGIDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRAEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +   T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 226

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   N+      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKDEADLVLLDIMLPE--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++   
Sbjct: 62  EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + ++ +   +
Sbjct: 122 TVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKAKIITTVRGVGYVI 223


>gi|114569494|ref|YP_756174.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339956|gb|ABI65236.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 223

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G   +     E    +  +A  DV  ++  +       L
Sbjct: 3   ILIVEDDREAASYIRKGLRESGHVADHAGDGEEGLEMARAAEYDVLVVDRMMPR--MDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ +S    +   ++   +G DD + KP    E+LARV A+ RR  
Sbjct: 61  SMVEALRADDDRTPVLILSALGEVDDRVEGLKAGGDDYLVKPYAFAELLARVEALARRRD 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +   G + +    R    +GE   L  RE R+LE+LM + G+ V +T +   ++
Sbjct: 121 PDTVRTKLVVGDLEMDLLARTVIREGEDILLQPREFRLLEFLMKHSGQVVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIDKPFPRSLLHTVRGAGYRL 221


>gi|126432768|ref|YP_001068459.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126232568|gb|ABN95968.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 243

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+          G  +    + +    L S+   D   ++  +       + 
Sbjct: 21  LMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPE--LDGVA 78

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA  + +P+  +S   ++   +   ++G DD + KP    E++AR+ A+ RR   
Sbjct: 79  VVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHH 138

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+   +    GP+ + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++
Sbjct: 139 SDRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVW 198

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D  V+ NV +  IS LR+KL        + + R +GY +
Sbjct: 199 G-YDFDVDTNVADVFISYLRRKLERDGLPRVIHTVRGIGYVL 239


>gi|320664822|gb|EFX31957.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 227

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTLRGVGYMLEV 223


>gi|166031344|ref|ZP_02234173.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC
           27755]
 gi|166028749|gb|EDR47506.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC
           27755]
          Length = 231

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        DG  +    + +  E ++   +E V  +   ++      +
Sbjct: 4   ILVCDDDKEIVEAIEIYLTQDGHQV--LEAYDGIEAVEILKKESVDLLIMDIMMPRMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR    +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RATLKIREKHNIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSHLRRYMQ 121

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K S      G + +  D ++  V GE   L   E  IL  L+ ++GK  +  QI
Sbjct: 122 LGSTAIKESEAIYTVGGLAINDDLKEVTVDGEPVKLTPIEYNILLLLVKHQGKVFSIDQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+      V+ N V  HI  +R+K+  N      +     +GY I+
Sbjct: 182 YENIWNENAVGVD-NTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIE 229


>gi|326692942|ref|ZP_08229947.1| two-component system regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 109/225 (48%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D  I  F  D   +   ++    E+    +  D+   +  L   GE  L
Sbjct: 7   ILLIEDDVNLADN-IVGFLQDFADVHAVDNGLDGEFEGQESPYDLIISDLMLP--GENGL 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R  + + P++ ++   SL   ++ F+ G DD + KP +  E+L RV A+ RR  
Sbjct: 64  EVIKHLREKNIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLLRVKALLRRAG 123

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V   +N    G + +  + R  +V G+   L  +E  IL YL  N+   V + QIF  ++
Sbjct: 124 VYSEDNTIAVGDVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G+ D     NVV  +++ LR+KL      D + + R +G+ ++ +
Sbjct: 184 GI-DSDTTINVVNIYLNNLRRKLEAVGQHDLIKTLRNIGFILEVD 227


>gi|238894177|ref|YP_002918911.1| DNA-binding transcriptional regulator PhoP [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546493|dbj|BAH62844.1| response regulator in two-component regulatory system with PhoQ
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 237

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++        ++       D++ ++  L    E  L 
Sbjct: 18  LVVEDNALLRHHLKVQLQELGHQVDAAEDAREADYYLGEHLPDIAIVDLGLPD--EDGLS 75

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ RR   
Sbjct: 76  LIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLRRNSG 135

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  +   L   E  I+E L+ NRGK V+K  +   +Y  
Sbjct: 136 LASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLMLQLY-P 194

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 195 DAELRESHTIDVLMGRLRKKIQAEYPQDVITTVRGQGYLFE 235


>gi|254386477|ref|ZP_05001780.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345325|gb|EDX26291.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 235

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 98/238 (41%), Gaps = 31/238 (13%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++        DG  +    +G + LE         R D++ ++  +   G 
Sbjct: 7   LFVEDDDVIREATTLALERDGFVVTAMPDGLSGLESFRAD----RPDIALLDVMVP--GM 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 61  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRR 120

Query: 119 ----------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
                                     G + V ++G +    G    L   E R+L    +
Sbjct: 121 FGHAGGPNGGGGADDDADGERGVLTFGELEVDTEGMEVRKAGAPVALTPTEMRLLLEFSS 180

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             G  +++ ++   ++  +D   +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 181 APGTVLSRDRLLERVWD-YDWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 233


>gi|148652503|ref|YP_001279596.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571587|gb|ABQ93646.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 224

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D + + DG +      G+ ++ F+  +  E        D   ++  L       +
Sbjct: 4   ILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLP--KGDGM 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  RA H   P++ I+   ++   +   ++G DD + KP    E++AR+ A+ RR +
Sbjct: 62  TVLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQ 121

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +      +    QG++  L  +E  ILE ++ +  +  ++  +   +YG
Sbjct: 122 GRCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLYG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + + +E N +E HI  LRKKL    G D + +KR +GY ++
Sbjct: 182 -WQQDIESNAIEVHIHHLRKKL----GNDFILTKRGIGYYLN 218


>gi|300868611|ref|ZP_07113225.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300333370|emb|CBN58417.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 245

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L      D+  ++  L        
Sbjct: 5   ILVIDDDPTIAELVAVNLEMAGYEVTQAEDGIKGQALAIQMLPDLIMLDLMLPRV--DGF 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     + +P++ ++     Q  ++ F+SG DD + KP    E+LARV A+ RR
Sbjct: 63  TVCQRLRRDDRTADIPVLMLTALGQTQDKVEGFNSGADDYLTKPFELEEMLARVRALLRR 122

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP+ +  +  +     ++  L   E  +L  L+   G+ V+ ++
Sbjct: 123 TDRIPQAAKHAEILSYGPLTLVPERFEAIWYAQIVKLTHLEFELLHCLLQRHGQTVSPSE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR K+  +      + +    GY ++
Sbjct: 183 ILKEVWG-YDPDDDIETIRVHIRHLRTKMEPDPRHPRFIKTVYGAGYCLE 231


>gi|228968381|ref|ZP_04129376.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791347|gb|EEM38954.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 226

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 100/231 (43%), Gaps = 18/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR----EDVSAIEAFLIGKG 57
            +++DD + +++          + +EG+  L   +  ++  R     DV  ++  L    
Sbjct: 4   ILVVDDESSIRNLIRMQLE---MEMEGYEVLAAADGREALERWNEGPDVLILDVMLPDT- 59

Query: 58  EKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
               EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + 
Sbjct: 60  -DGYELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 118

Query: 117 RRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR+K     VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + 
Sbjct: 119 RRVKKTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++   ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 179 ELLEKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 226


>gi|120402833|ref|YP_952662.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955651|gb|ABM12656.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 251

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +        +      +      DV  ++  L   G   LE
Sbjct: 18  LVVDDEVPLAEVIAGYLEREQFETIVAANGLDAISVARELDPDVVILDLGLP--GIDGLE 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR +V 
Sbjct: 76  VCRQIRTFSDAYVVMLTARDTEIDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRVL 135

Query: 123 NNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           +              + GP+ +    R+  + GE   L R E  ILE L  + G  +++ 
Sbjct: 136 HTAGAAAERNVTPPRQFGPLSIDVAAREVRIDGEPILLTRTEFDILEALSGHPGIVLSRR 195

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 196 QLIEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAAQPRYIRTVRGVGYRM 244


>gi|13476381|ref|NP_107951.1| two-component system, regulatory protein [Mesorhizobium loti
           MAFF303099]
 gi|14027142|dbj|BAB54096.1| two-component system, regulatory protein [Mesorhizobium loti
           MAFF303099]
          Length = 221

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D   +         D G  ++     E   +L  +   D   ++  L    G  V+
Sbjct: 4   LVVEDDKDLNRQIADALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQIDGISVV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E  R  R   ++P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR   
Sbjct: 64  E--RWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++    GP+R+ +     +V G    L   E R+L YLM + G+ V++T++   +Y  
Sbjct: 122 HASSELTCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  + +LRKK+    G D +++ R +GY +
Sbjct: 182 -DFDRDSNTIEVFVGRLRKKM----GIDMIETVRGMGYRM 216


>gi|322805284|emb|CBZ02848.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 240

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++IDD   +      +   +G     + +   E+  +   +   D+  ++  L     +
Sbjct: 11  ILVIDDEEDIVRLIRTVLKKEGFQ-NIYYATNLEDGFKEFNKVEPDIVILDIMLPD--GE 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             EL + IRA S+VP++ +S        +  F  G DD + KP   +E+  RV A  RR 
Sbjct: 68  GYELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRY 127

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K   N    GP  +     + +  GE+  L  +E  ++ +   +  + ++K +I
Sbjct: 128 SYVDEVKEEKNILSFGPFELNISKAEFKKDGELIELKPKELALIAFFAKHPNQIISKEKI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G  D    +N +  HI +LR+K+  +    + + + + LGY +
Sbjct: 188 CDNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234


>gi|315652558|ref|ZP_07905539.1| response regulator [Eubacterium saburreum DSM 3986]
 gi|315485187|gb|EFU75588.1| response regulator [Eubacterium saburreum DSM 3986]
          Length = 250

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 11/229 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD   + D        +G  +    + + EE ++  A+  V  +   ++      
Sbjct: 23  LILVCDDDREIVDAIKIYLSGEGFEV--IAAYDGEEAIKLMAKHKVDLLIIDIMMPVLDG 80

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +     IR +S +P+I +S        +   + G DD + KP +  E++ARV +  RR K
Sbjct: 81  IRATMQIRENSTIPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRRYK 140

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R   G + +  + ++  V GE+  L   E  IL  L  N GK  +  +I
Sbjct: 141 KLGNMSMPEPQRVVVGDLEIDDETKEVVVAGELIKLTPIEYNILLLLAKNAGKVYSIDEI 200

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 201 YEQIWNE-EAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIE 248


>gi|293374093|ref|ZP_06620428.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292647259|gb|EFF65234.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 235

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G+     ++ E    L  +    +  ++  +       + 
Sbjct: 7   LVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVMMP--KMDGIV 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
              +IR  S VP+I ++        +     G DD + KP +  E++ARV +  RR    
Sbjct: 65  TTSLIREFSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQLRRYLML 124

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          E   +R+    +   V      L   E +IL  LM N+G+  +  
Sbjct: 125 GAKSSNQQTTDEGTIEINGLRINLSTKQTFVDDIEVRLTPTEFKILSLLMRNKGRVFSIN 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+  ++       E N V  HI K+R+K+  N      +     +GY I+
Sbjct: 185 DIYERVWDEPGYNAE-NTVAVHIRKIREKIEINPKEPRYLKVVWGVGYKIE 234


>gi|223985682|ref|ZP_03635730.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM
           12042]
 gi|223962373|gb|EEF66837.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM
           12042]
          Length = 223

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++        + G  + G            +   D+  I+  L       +
Sbjct: 4   ILLIEDEDSIRHLISYDLKNAGFDVTGCPDGASAREKGLNESFDIMIIDWMLPE--ISGI 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL R+ R       ++ ++     +  L+ F++GVDD + KP   RE+LAR+ A  +R +
Sbjct: 62  ELVRLFRGKGIDSVMMMLTAKDEEEDILEAFEAGVDDYITKPFSPRELLARIQAHVKRIV 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K S    E G + +    R+  V G+   L ++E  +LEYL+ N    +++  I + I+ 
Sbjct: 122 KTSRRVLEMGGLTMDLGSREVSVNGQPVSLTKKEFELLEYLLRNPQIVLSRDNILNEIWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            FD   +  +V+ HI KLR KL+       + S R +GY ++ 
Sbjct: 182 -FDYDGDTRIVDVHIFKLRNKLQGSGVK--IASLRGIGYKLEV 221


>gi|331004256|ref|ZP_08327734.1| hypothetical protein HMPREF0491_02596 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411421|gb|EGG90833.1| hypothetical protein HMPREF0491_02596 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 229

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +         G  ++   S   +E L+ +  ED   +   L+  G    E
Sbjct: 5   LIIEDEVSIAELERDYLEISGFEVDI--STNGKEGLERALSEDYELLLLDLMLPGMDGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + +RA  ++P+I +S   +    +     G DD + KP    E++ARV A   R    
Sbjct: 63  ICKQVRAVKEIPIIMVSAKKNDIDKIRGLGLGADDYMTKPFSPSELVARVKAHIGRYDRL 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  E   +++ +  R     G    L  +E  IL +L  +  K  +K  +F 
Sbjct: 123 AGVAASDKDIIEIRDLKIDAGSRRVWGYGNEKTLTAKEFDILYFLAKHPNKVYSKEDLFK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++GL +   + + V  HI  +R+K+  +      +++   +GY +
Sbjct: 183 EVWGL-ESMGDISTVTVHIKNIREKIELDSSKPQFIETIWGVGYRL 227


>gi|331268770|ref|YP_004395262.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125320|gb|AEB75265.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 229

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +      L    G +++   +    E +      D   I   L+  G    
Sbjct: 6   ILVIEDDNDINKMLSKLIEKKGYNVK--QAYSGTEGMLYIESLDFQLILLDLMLPGMTGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR   ++P+I IS     +  L+ F  G DD V KP    E+ AR+ A  RR   
Sbjct: 64  ELIKKIRKTKKLPIIVISAKLDKEIKLELFKLGADDYVTKPFDIDELSARIDANLRRYID 123

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            NN            I +  + ++  V G+   L  RE  ILE L+ +  K  +K  +F 
Sbjct: 124 FNNSSNGEKDIVHKDIILNKEAKEVLVSGQELSLTSREFNILELLLTHPKKVFSKANLFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +++G  +   +EN V  HIS LR KL +     + +++   +GY +
Sbjct: 184 SVWG-DEYLGDENTVNVHISNLRNKLNKASPNEEYIETVWGMGYKL 228


>gi|289207427|ref|YP_003459493.1| transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288943058|gb|ADC70757.1| two component transcriptional regulator, winged helix family
           [Thioalkalivibrio sp. K90mix]
          Length = 238

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 106/220 (48%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V+I+D   ++        ++G  ++  +  +   +L +    D++ ++  L   G   L+
Sbjct: 6   VVIEDDLALRSQIAEEMENNGCRVDTASDGDTGLYLLTEYHCDIAVVDLGLP--GMDGLD 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R  R    Q+P++ ++     Q  ++  ++G DD + KP H +E++AR+ A+ RR L+
Sbjct: 64  VIRKAREVKPQLPILILTARDRWQDKVEGLEAGADDYLTKPFHIQELVARLRALARRSLQ 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + + GP+ + +   D  +  E   L   E R+L  L+   G+ ++K  +   +Y  
Sbjct: 124 AGREQLQFGPLVIDTATDDVRLNDEPVSLTTFEYRLLLTLVRQPGRVLSKEVLADYLY-E 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE  E NV+E  I +LR+KL        +++ R  GY  
Sbjct: 183 HDEDRESNVIEVLIGRLRRKLDPGGSLGLIETLRGRGYRF 222


>gi|170782838|ref|YP_001711172.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157408|emb|CAQ02597.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 252

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 11/223 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   V +         G  +E          + +    D+  ++  L   G   LE+ 
Sbjct: 2   VEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLP--GLDGLEVC 59

Query: 65  RIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           R IRAH   S VP++ ++     +  ++  D+G DD + KP   RE++ RV A+ RR   
Sbjct: 60  RRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRRTVP 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V       GP  +    R+    G +  L  RE  +L +L+ N  +   +  +  +++
Sbjct: 120 EAVPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLLRSVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G   E  + + V  H+ +LR+K+  +      + +   +GY  
Sbjct: 180 GW--EIGDLSTVTVHVRRLREKIEADPAHPVLLGTVWGVGYRF 220


>gi|15598005|ref|NP_251499.1| two-component response regulator, CopR [Pseudomonas aeruginosa
           PAO1]
 gi|218891000|ref|YP_002439866.1| two-component response regulator, CopR [Pseudomonas aeruginosa
           LESB58]
 gi|254235792|ref|ZP_04929115.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719]
 gi|254241263|ref|ZP_04934585.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192]
 gi|9948893|gb|AAG06197.1|AE004708_3 two-component response regulator, CopR [Pseudomonas aeruginosa
           PAO1]
 gi|126167723|gb|EAZ53234.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719]
 gi|126194641|gb|EAZ58704.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192]
 gi|218771225|emb|CAW26990.1| two-component response regulator, CopR [Pseudomonas aeruginosa
           LESB58]
          Length = 226

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +     E L      D+  ++  L   G    
Sbjct: 3   LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLP--GRDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R +R A   VP++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   + +    R  + QG+   L  +E  +LE L+   G+ + K+ I S ++
Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLE 222


>gi|16330036|ref|NP_440764.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1652523|dbj|BAA17444.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 234

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 97/234 (41%), Gaps = 15/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +      G  G +++  +  +    +  + + D+  ++  L       L
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQV--SGL 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR      P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 62  EICRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQS 121

Query: 121 VS-----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        NN      + +    +    QG+   L  +E  +L   +   G+ ++
Sbjct: 122 HGETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             +I+S ++   +     NV+ + +  LR+K+        ++S    GY  + N
Sbjct: 182 HEEIYSHLW-PGESPPSSNVLAALVRLLRRKIEQPNAPRLINSVYGKGYCFEAN 234


>gi|257453899|ref|ZP_05619176.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus
           SK60]
 gi|257448671|gb|EEV23637.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus
           SK60]
          Length = 245

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 99/231 (42%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
           +LI+D   + +      G +   ++    + E  E L + A+  D+  ++  L       
Sbjct: 12  LLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPD--MDG 69

Query: 61  LELPRIIRAHSQ-----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           +++ + IR H         +I ++        +   + G DD V+KP   RE+LAR+ A+
Sbjct: 70  MQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIRAV 129

Query: 116 YRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            RR      +   +    G ++V+ D  +  +  E   L   + ++L Y   + GK +++
Sbjct: 130 MRRHDLPLHQQKEDNLVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSGKVLSR 189

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            Q++ A+         +  ++ HIS+LR  + +       + + R +GY  
Sbjct: 190 EQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 240


>gi|187778087|ref|ZP_02994560.1| hypothetical protein CLOSPO_01679 [Clostridium sporogenes ATCC
           15579]
 gi|187775015|gb|EDU38817.1| hypothetical protein CLOSPO_01679 [Clostridium sporogenes ATCC
           15579]
          Length = 240

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 99/228 (43%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++IDD   +      +   +G     + +   E+ L+   +   D+  ++  L     +
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQ-NIYYATNLEDGLKEFNKVEPDILILDVMLPD--GE 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             EL + IRA S+VP++ +S        +  F  G DD + KP   +E+  RV A  RR 
Sbjct: 68  GYELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRY 127

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K   N    GP  +     + +  GE+  L  +E  ++ +   +  + ++K +I
Sbjct: 128 SYVDEVKEEKNILSFGPFELNISKAEFKRDGEIIELKPKELALITFFAKHPNQIISKEKI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G  D    +N +  HI +LR+K+  +    + + + + LGY +
Sbjct: 188 CDNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234


>gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 226

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+++     F  +   +    +      L      D+  ++  +        
Sbjct: 5   ILLVEDDTLMREFITDYFKKEQWDVHEAENGRVALELFERVSVDLIVLDIMMPE--MDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I I+     +  L  F+ G D+ V KP+  R ++AR  A+ +R + 
Sbjct: 63  SVCRRIREKSDVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANALMKRTER 122

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  R     + G + V  +     V GE+  L  +E  +L +L+ + GK +++  I +A+
Sbjct: 123 TVGREAELLQYGELSVNREAHTVTVTGELINLSPKEYDLLLFLIKHDGKVLSRDYILNAV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +   V++HI KLR KL +      + +    GY  +
Sbjct: 183 WG-YEYLGDLRTVDTHIKKLRAKLGDAG--KLIATVIRSGYRFE 223


>gi|119490531|ref|ZP_01622973.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119453859|gb|EAW35015.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 225

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +         G  ++G  + +  +WL      D+   +  L       +
Sbjct: 3   ILLVEDDIEQLEPIRTALSQAGHIVDGVETGDTAQWLMGETDYDLLIFDWMLPAV--SGV 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL R  R+  +  P++ ++   +    +   DSG DD + KPI   E+LAR+ A+ RR  
Sbjct: 61  ELCRTYRSMGKTAPVLLLTAKDTTADKVIGLDSGADDYLVKPIDLLELLARIRALGRRSP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  + G + +       + + +   L  RE ++LEY + +  + +++ QI  +++ 
Sbjct: 121 HWLGDSLKLGDLELNLARLCVQREEKQVQLSVRESQLLEYFLRHPNQVLSRDQIEQSLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E N V + + +LR++L      + +++   LGY I+
Sbjct: 180 EWDNPPESNAVSTLVRRLRQRLGQVDAANWIETVYGLGYRIN 221


>gi|50119831|ref|YP_048998.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610357|emb|CAG73801.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 226

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G S      L  +E +  +   D +A+   ++      +
Sbjct: 3   ILLVDDDVELGDMLCEYLNAEGFSTS--RVLTGKEGVNGAISGDYTAMILDVMLPDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR   Q+P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 61  DVLRQIRKTQQLPIIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYDD 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K   + A +G + +    R  E +G+ F L   E  +LE L+ +  + V+K ++  
Sbjct: 121 QPSTKRDESVAASGDLVLNPATRISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELSE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 KCLGRRREAYD-RSVDVHISNIRQKLGALAGNMMTIETVRSVGYRI 225


>gi|115359931|ref|YP_777069.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria AMMD]
 gi|115285219|gb|ABI90735.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria AMMD]
          Length = 223

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPE--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR  +
Sbjct: 61  EVLRRLRAQKQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  +   + +    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NARDLLQVADLEIDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|294813210|ref|ZP_06771853.1| Transcriptional regulatory protein cseB [Streptomyces clavuligerus
           ATCC 27064]
 gi|326441678|ref|ZP_08216412.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325809|gb|EFG07452.1| Transcriptional regulatory protein cseB [Streptomyces clavuligerus
           ATCC 27064]
          Length = 232

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 92/231 (39%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G  +              + R D++ ++  +   G   + 
Sbjct: 7   LFVEDDDVIREATQLALERHGFVVTAMPDGLLGLEAFRADRPDIALLDVMVP--GLDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 65  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGRA 124

Query: 123 -------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                              G + + ++G +    G    L   E R+L       G  ++
Sbjct: 125 GAGDTAGSGQEAPGALLSFGDLEIDTEGMEVRKGGVPVALTPTEMRLLLEFSTAPGTVLS 184

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 RDRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 230


>gi|227891159|ref|ZP_04008964.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|227867033|gb|EEJ74454.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300214820|gb|ADJ79236.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 239

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 106/236 (44%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEF-EEWLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   V +     F  +   +E  ++ +   E++ + S   D+  ++  L   G  
Sbjct: 3   LLMIEDNKSVCEMMSMFFEKEKWDVEYAYDGISAVEKFKEKSDEWDMITLDLNLP--GMD 60

Query: 60  VLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++   IR   S VP+I ++   S    +   + G D+ V+KP     ++AR+ A++RR
Sbjct: 61  GMQVNAEIRKISSTVPIIILTARDSESDQILGLEMGADEYVSKPFSPITLIARIKALHRR 120

Query: 119 LKVS------------NNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
            ++S            +   +T   ++ S  R+  +       L  +E  +L  L     
Sbjct: 121 AQISALGSNKQNKVDDDFDVKTDHFKLNSSTREAYLNDNRIDGLTPKEFDLLRVLAKKPR 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++  ++   +E  V++HI KLR+K+  K+G   + +   +GY  D
Sbjct: 181 QVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KVGPQVIQTVWGVGYKFD 234


>gi|170755642|ref|YP_001780597.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120854|gb|ACA44690.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 240

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++IDD   +      +   +G     + +   E+  +   +   D+  ++  L     +
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQ-NIYYATNLEDGFKEFNKTEPDIVILDIMLPD--GE 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             EL + IR+ S+VP++ +S        +  F  G DD + KP   +E+  RV A  RR 
Sbjct: 68  GYELCKTIRSKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRY 127

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     N    GP  +     + +  GE+  L  +E  ++ +   +  + ++K +I
Sbjct: 128 SYVENVNEEKNILSFGPFELNISKAEFKKDGELIELKPKELALITFFAKHPNQIISKEKI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G  D    +N +  HI +LR+K+  +    + + + + LGY +
Sbjct: 188 CDNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234


>gi|157155282|ref|YP_001463431.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           E24377A]
 gi|187730866|ref|YP_001879801.1| DNA-binding transcriptional regulator BaeR [Shigella boydii CDC
           3083-94]
 gi|193069293|ref|ZP_03050249.1| DNA-binding response regulator BaeR [Escherichia coli E110019]
 gi|194431476|ref|ZP_03063768.1| DNA-binding response regulator BaeR [Shigella dysenteriae 1012]
 gi|209919543|ref|YP_002293627.1| DNA-binding transcriptional regulator BaeR [Escherichia coli SE11]
 gi|218554646|ref|YP_002387559.1| DNA-binding transcriptional regulator BaeR [Escherichia coli IAI1]
 gi|218695701|ref|YP_002403368.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 55989]
 gi|260856059|ref|YP_003229950.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O26:H11 str. 11368]
 gi|260868788|ref|YP_003235190.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O111:H- str. 11128]
 gi|300818923|ref|ZP_07099128.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821816|ref|ZP_07101961.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300902275|ref|ZP_07120272.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|301304482|ref|ZP_07210593.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301643523|ref|ZP_07243567.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|309792958|ref|ZP_07687386.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331653508|ref|ZP_08354509.1| transcriptional regulatory protein BaeR [Escherichia coli M718]
 gi|331668775|ref|ZP_08369623.1| transcriptional regulatory protein BaeR [Escherichia coli TA271]
 gi|331677990|ref|ZP_08378665.1| transcriptional regulatory protein BaeR [Escherichia coli H591]
 gi|331683763|ref|ZP_08384359.1| transcriptional regulatory protein BaeR [Escherichia coli H299]
 gi|157077312|gb|ABV17020.1| DNA-binding response regulator BaeR [Escherichia coli E24377A]
 gi|187427858|gb|ACD07132.1| DNA-binding response regulator BaeR [Shigella boydii CDC 3083-94]
 gi|192957426|gb|EDV87873.1| DNA-binding response regulator BaeR [Escherichia coli E110019]
 gi|194420301|gb|EDX36378.1| DNA-binding response regulator BaeR [Shigella dysenteriae 1012]
 gi|209912802|dbj|BAG77876.1| two-component response regulator [Escherichia coli SE11]
 gi|218352433|emb|CAU98207.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli 55989]
 gi|218361414|emb|CAQ99001.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli IAI1]
 gi|257754708|dbj|BAI26210.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O26:H11 str. 11368]
 gi|257765144|dbj|BAI36639.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O111:H- str. 11128]
 gi|300405637|gb|EFJ89175.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300525658|gb|EFK46727.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300528542|gb|EFK49604.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300840208|gb|EFK67968.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301078096|gb|EFK92902.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|308123244|gb|EFO60506.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|315255409|gb|EFU35377.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|320179499|gb|EFW54454.1| Response regulator BaeR [Shigella boydii ATCC 9905]
 gi|323152300|gb|EFZ38589.1| transcriptional regulatory protein baeR [Escherichia coli EPECa14]
 gi|323172671|gb|EFZ58305.1| transcriptional regulatory protein baeR [Escherichia coli LT-68]
 gi|323177024|gb|EFZ62614.1| transcriptional regulatory protein baeR [Escherichia coli 1180]
 gi|324019615|gb|EGB88834.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324119108|gb|EGC12997.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|331048357|gb|EGI20433.1| transcriptional regulatory protein BaeR [Escherichia coli M718]
 gi|331063969|gb|EGI35880.1| transcriptional regulatory protein BaeR [Escherichia coli TA271]
 gi|331074450|gb|EGI45770.1| transcriptional regulatory protein BaeR [Escherichia coli H591]
 gi|331078715|gb|EGI49917.1| transcriptional regulatory protein BaeR [Escherichia coli H299]
 gi|332092359|gb|EGI97433.1| transcriptional regulatory protein baeR [Shigella dysenteriae
           155-74]
          Length = 240

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|262043157|ref|ZP_06016295.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039545|gb|EEW40678.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 240

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++        ++       D++ ++  L    E  L 
Sbjct: 21  LVVEDNALLRHHLKVQLQELGHQVDAAEDAREADYYLGEHLPDIAIVDLGLPD--EDGLS 78

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  LIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLRRNSG 138

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  +   L   E  I+E L+ NRGK V+K  +   +Y  
Sbjct: 139 LASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLMLQLY-P 197

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 198 DAELRESHTIDVLMGRLRKKIQAEYPQDVITTVRGQGYLFE 238


>gi|108797145|ref|YP_637342.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866230|ref|YP_936182.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108767564|gb|ABG06286.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692319|gb|ABL89392.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 243

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+          G  +    + +    L S+   D   ++  +       + 
Sbjct: 21  LMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPE--LDGVA 78

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA  + +P+  +S   ++   +   ++G DD + KP    E++AR+ A+ RR   
Sbjct: 79  VVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHH 138

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+   +    GP+ + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++
Sbjct: 139 SDRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVW 198

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D  V+ NV +  IS LR+KL        + + R +GY +
Sbjct: 199 G-YDFDVDTNVADVFISYLRRKLERDGLPRVIHTVRGIGYVL 239


>gi|55981331|ref|YP_144628.1| response regulator [Thermus thermophilus HB8]
 gi|55772744|dbj|BAD71185.1| response regulator [Thermus thermophilus HB8]
          Length = 227

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 90/217 (41%), Gaps = 4/217 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   V     A   + G  ++   +           + D+  ++  L        
Sbjct: 4   ILLIEDDPEVARLVEAELKEAGFQVDWAKTGMEGLIRHREGKPDLVVLDLGLPD--LDGA 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P++ ++   ++   +     G DD + KP H  E+LAR+     R K 
Sbjct: 62  EVARRIRATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAELLARIQVQL-RHKE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + ++   R    +     L  +E  +L  LM+  G+   + +I   ++G  
Sbjct: 121 GSEVLAVGQLELYPGKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWGRP 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               + NV++ H++ LR KLR    +  + + R +GY
Sbjct: 181 -LGKDSNVLDVHMANLRAKLREAGAYGYLRTVRGVGY 216


>gi|307330420|ref|ZP_07609564.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306883937|gb|EFN14979.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 230

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 94/234 (40%), Gaps = 23/234 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++        DG  +              + R D++ ++  +   G   + 
Sbjct: 2   LFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRADRPDIALLDVMVP--GLDGVS 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 60  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 119

Query: 123 N----------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           +                     G + +  +G +    G    L   E R+L    A  G 
Sbjct: 120 SGPGGRGAEPVPEEPDGGVLCFGDLEIDPEGMEVRKGGRQVALTPTEMRLLLEFSAAPGT 179

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 180 VLSRDRLLERVW-EYGWGGDTRVVDVHVQRLRGKI----GQDRIETVRGFGYKL 228


>gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|157736695|ref|YP_001489378.1| two-component response regulator [Arcobacter butzleri RM4018]
 gi|157698549|gb|ABV66709.1| two-component response regulator [Arcobacter butzleri RM4018]
          Length = 225

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       ++   ++   + +   +L S    D+  ++  L  K    +
Sbjct: 6   ILIIEDDLKIINFLKKGLEEECYIVDFSTNGDEGLYLASINTYDLILLDIMLPVK--NGI 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+ + Q P+I ++   S++  +   D G +D + KP    E+LAR+    R   
Sbjct: 64  EVCKSLRSSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQLRITT 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +     + +    +      +   L  +E  +LEYL+ N+ + +++T I  A+   
Sbjct: 124 TTQTKLSIADLELDLLNKTASRSNQNIVLTAKEFSLLEYLIKNKNRVLSETTINEALSSF 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  +  N+V  +I +LR K+        + + R +G+ I
Sbjct: 184 EDSNI-SNIVNVYIYRLRNKIDKNFENKLIKTVRGIGFKI 222


>gi|304393592|ref|ZP_07375520.1| two component transcriptional regulator [Ahrensia sp. R2A130]
 gi|303294599|gb|EFL88971.1| two component transcriptional regulator [Ahrensia sp. R2A130]
          Length = 216

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +    ++   +    ++  +  E   +L  +   D   ++  L    G  V
Sbjct: 3   ILVVEDDRDLNRQLVSALEEASYVVDSASDGEEGHFLGDTEPYDAVILDVGLPELDGISV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  +  R    +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 63  LE--KWRRGGRSMPVLLLTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+   E G + + +      + G    L   E R+L YLM ++G+ V++T++   +Y 
Sbjct: 121 GHSSAEIEIGKVLLDTRQSRVFMDGTPVKLTSHEFRLLSYLMHHKGEIVSRTELIEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL +    D +++ R LGY +
Sbjct: 181 Q-DFDKDSNTIEVFVGRLRKKLHS----DVIETVRGLGYRV 216


>gi|148653918|ref|YP_001281011.1| osmolarity response regulator [Psychrobacter sp. PRwf-1]
 gi|148573002|gb|ABQ95061.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 248

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        DDG  +   +     + L       +  ++  L   GE  +
Sbjct: 16  ILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLP--GEDGI 73

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + +R  +S +P+I ++   S    +   ++G DD + KP + +E+LAR+ A+ RR  
Sbjct: 74  AICKRLREENSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHS 133

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E GP  +    R  +  G V  L   E  +L+ L+ +  + + + +
Sbjct: 134 RELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDK 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  +    E  ++  +S+LR+ + +       + +   +GY  
Sbjct: 194 LMNLARGR-EWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 241


>gi|82779650|ref|YP_405999.1| DNA-binding response regulator CreB [Shigella dysenteriae Sd197]
 gi|170021642|ref|YP_001726596.1| DNA-binding response regulator CreB [Escherichia coli ATCC 8739]
 gi|253774972|ref|YP_003037803.1| DNA-binding response regulator CreB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164324|ref|YP_003047434.1| DNA-binding response regulator CreB [Escherichia coli B str.
           REL606]
 gi|293417871|ref|ZP_06660493.1| two-component system [Escherichia coli B185]
 gi|297517068|ref|ZP_06935454.1| DNA-binding response regulator CreB [Escherichia coli OP50]
 gi|300918114|ref|ZP_07134726.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300930636|ref|ZP_07146025.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300947478|ref|ZP_07161662.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300955637|ref|ZP_07167992.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|309787378|ref|ZP_07681990.1| transcriptional regulatory protein creB [Shigella dysenteriae 1617]
 gi|81243798|gb|ABB64508.1| catabolic regulation response regulator [Shigella dysenteriae
           Sd197]
 gi|169756570|gb|ACA79269.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|242379919|emb|CAQ34756.1| CreB transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253326016|gb|ACT30618.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976227|gb|ACT41898.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli B str. REL606]
 gi|253980384|gb|ACT46054.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli BL21(DE3)]
 gi|291430589|gb|EFF03587.1| two-component system [Escherichia coli B185]
 gi|300317474|gb|EFJ67258.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300414698|gb|EFJ98008.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300452912|gb|EFK16532.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300461487|gb|EFK24980.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|308924956|gb|EFP70451.1| transcriptional regulatory protein creB [Shigella dysenteriae 1617]
 gi|323939784|gb|EGB35986.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
          Length = 229

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQAPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 SSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|332884908|gb|EGK05163.1| hypothetical protein HMPREF9456_03076 [Dysgonomonas mossii DSM
           22836]
          Length = 228

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 103/229 (44%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE---DVSAIEAFLIGKGE 58
            ++++D   +       F + G+++ GF +    + L +  +    D   I   +I    
Sbjct: 3   ILIVEDEQNISS-----FIERGLNISGFETEICNDGLHAWEKLQITDYDLIIMDIIMPFM 57

Query: 59  KVLELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
             LEL +  R       P+I ++   + +  +   ++G DD + KP    E+ AR+ A+ 
Sbjct: 58  SGLELCKAYRQKFGYITPVILLTALSTTEDIVKGLNAGADDYIVKPFKLVELEARINALL 117

Query: 117 RRLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR KVS     +   +   +++ ++ +     G +  L  +E  +LEY M N  + +++ 
Sbjct: 118 RRSKVSTEIEDDKILQISNLKLDTNTKQAIRDGNIIYLTAKEYLLLEYFMKNPNRVLSRQ 177

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   ++ + +     N+V+ +++ +R K++ +     + +   LGY +
Sbjct: 178 TLLENVWDI-NFDTNTNIVDVYVNYIRNKIQPEGMDKLIHTVIGLGYIL 225


>gi|332530194|ref|ZP_08406142.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
 gi|332040386|gb|EGI76764.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
          Length = 244

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +  F + + +   +   RE V  I   L+  GE  L
Sbjct: 12  ILVVDDDARIRDLLRRYLTQEGFEV--FLAEDGKALTRILLRESVDLIVLDLMMPGEDGL 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +RA +   P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 70  SICRRLRAANDRTPIIMLTAKVEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRRRP 129

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            GP       R     GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 130 APEAPGAPSSEQEVVAFGPYVFDLSARTLRKDGEELPLTTGEFAMLKALVRHPRQPMSRE 189

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 190 KLAQQARGR-EFEPFDRSLDVQVSRLRKLIELDPASPRYIQTVWGVGYVF 238


>gi|318056730|ref|ZP_07975453.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318075364|ref|ZP_07982696.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 225

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E                 D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLP--GMDGLE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +RA    VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|313107944|ref|ZP_07794113.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310880615|gb|EFQ39209.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 228

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +     E L      D+  ++  L   G    
Sbjct: 5   LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLP--GRDGW 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R +R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 63  QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   + +    R  + QG+   L  +E  +LE L+   G+ + K+ I S ++
Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 183 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLE 224


>gi|326334181|ref|ZP_08200404.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
 gi|325947972|gb|EGD40089.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
          Length = 235

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +    +   +G   +     +       S + DV  ++  L   G   +E
Sbjct: 16  LVVDDDASLSEMLAIVLRQEGFDSQLVARGDLALPAFHSYKPDVVLLDLMLP--GMDGIE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR  S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR   S
Sbjct: 74  VCKQIRKESGVPIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKELIARIRARVRRHGES 133

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E G + +   G      GE   L   E  +LE L     +  ++  +   ++G +
Sbjct: 134 LPEILEIGDLTIDVAGHQVTRGGEQIQLTPLEFDLLECLARKPHQVFSREVLLEQVWG-Y 192

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
             A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 193 RHAADTRLVNVHVQRLRSKVEHDPENPEIVVTVRGVGYK 231


>gi|298290746|ref|YP_003692685.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927257|gb|ADH88066.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 263

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D     F + G  ++  +  E    L      DV  ++  L  +    L
Sbjct: 40  LLIVEDDRDAADYLRKAFREAGHVVDVASDGEEGLMLAREGGYDVLLVDRMLPRR--DGL 97

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L   +R      P + +S    +   +    +G DD + KP    E+LARV A+ RR  
Sbjct: 98  ALIAELRGRGDKTPALILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEALARRGG 157

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++       + +          G+   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 158 PQAADTVYRVADLELDRLAHRCTRAGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLENVW 217

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ H+S+LR K+        + + R  GY I
Sbjct: 218 D-YHFDPQTNVIDVHVSRLRSKIDKGFDPPLLHTVRGAGYII 258


>gi|295425292|ref|ZP_06817995.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295065068|gb|EFG55973.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 259

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+         +   D   ++  L       L
Sbjct: 25  ILIIEDEKNLARFVQLELQHENYETVVENNGRKGLDRALNENFDAILLDLMLPD--LNGL 82

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+K+
Sbjct: 83  EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 142

Query: 122 S----------NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAK 170
                          +   + + +  R      G+   L +RE  +L  L+ N+   V++
Sbjct: 143 EKEAQNVTVAKQQTVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIHNKNNVVSR 202

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 203 DELLNKIWGP-ESNIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYMV 251


>gi|229161599|ref|ZP_04289579.1| Two-component response regulator vanRB [Bacillus cereus R309803]
 gi|228621844|gb|EEK78690.1| Two-component response regulator vanRB [Bacillus cereus R309803]
          Length = 214

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++           ++    + +  E +    ++    I   ++       E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYTV--VVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVS 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   K  
Sbjct: 60  KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  ++++HI  LRKKL        + + + +GY ID
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKID 213


>gi|170702575|ref|ZP_02893449.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170132509|gb|EDT00963.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 232

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D  +     I    + G S+E  ++             D   ++  L   G   L + 
Sbjct: 14  IEDDEITAHEIIGELSNRGHSVEWVSNGRDGIAQAIGGEYDAVTLDRMLP--GVDGLSIL 71

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
             +R+   + P++ +S    +   +    +G DD + KP    E+  R+ A+ RR + + 
Sbjct: 72  MTMRSIGVRTPVLMLSALSDVDERIRGLRAGGDDYLIKPFDLEEMALRLEALMRRNRAAP 131

Query: 124 NRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + E     GP+ +    R     G    L   E R+LE++M + G+ + +T +F A++G
Sbjct: 132 AQPEAKLSVGPLSLDLITRKVHRDGTEIALLPTEFRVLEFMMRHAGQTITRTMLFEAVWG 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ H+ +LRKKL        + + R  GY +
Sbjct: 192 -YHFDPGTNLIDVHMGRLRKKLDPPGETPMIQTIRGTGYML 231


>gi|168212632|ref|ZP_02638257.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715801|gb|EDT27983.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 234

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + G ++  F      E L+   +E++      ++       
Sbjct: 6   ILVVEDEKEIAEAIEIYLKNQGYNV--FKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGA 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR   
Sbjct: 64  TMVMKIRESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSK 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +   N    G + V  D ++  + G+V  +   E +IL+ L+ + G+  +  
Sbjct: 124 YLNMVKKDEKKTNSYAIGGLEVNIDRKEVMLDGDVVKVTPIEFKILQLLIKSPGRVFSAE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 184 EIYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 232


>gi|302671203|ref|YP_003831163.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395676|gb|ADL34581.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 230

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++        ++G ++    + + +E L+  A  D+S     ++       
Sbjct: 5   ILIADDETEIRSLLKLYLENEGYAV--AEAGDGQEALKILAGGDISLCLLDVMMPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R ++ +P+I IS   +    +   D G DD + KP +  E +ARV +  RR   
Sbjct: 63  HVLKEMRKNNNIPVIIISARDTDPDKILGLDLGADDYMIKPFNPLEAVARVRSNLRRFHA 122

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +    E   +++ ++      QGE   L   E +++E  M N GK   K +I
Sbjct: 123 LKGDLQPQTGKIIELLDLKLDTEACILYRQGEKIELTSNELKMMELFMENPGKVFTKEKI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++G     V +N +   ISKLR KL +      + + R LGY ++
Sbjct: 183 YEYVWGDT-YVVADNNIMVAISKLRSKLCDDPSA-YIRTVRGLGYRME 228


>gi|255533554|ref|YP_003093926.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255346538|gb|ACU05864.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 227

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   +    +    ++G+ +    + +    L+ + + D   I   ++      ++
Sbjct: 7   LLIEDTPDLVSVILRGLSEEGIEISV--AADGVTGLEMAFKYDFDLIVLDIMLPVMNGIQ 64

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR   + V ++ ++   S +  +   +SG DD + KP    E++AR+  + RR   
Sbjct: 65  VCKEIRKRNTDVAILMLTALGSTENIVTGLESGADDYLVKPFKLEELVARMRTLIRRSSK 124

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +R     + +    +     G+   L   E R+LEYL+ N  K +++ QI   ++
Sbjct: 125 QAAVTDRISIADLEINIASKTVTKTGKPVNLTATEYRLLEYLLKNHNKVLSRIQILENVW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + D  +  NVV+ +I+ LRKK+ N  G   + +   +GY +
Sbjct: 185 DI-DFNLGTNVVDVYINYLRKKIDNVNGGRLIHTVFGMGYIL 225


>gi|239623920|ref|ZP_04666951.1| two-component system protein response regulator [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239521951|gb|EEQ61817.1| two-component system protein response regulator [Clostridiales
           bacterium 1_7_47FAA]
          Length = 234

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL--EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L+DD   + D    +   +G  +  + +N  +  +  +   + DV  ++  L      
Sbjct: 5   ILLVDDEKDIVDLVEEVLRKEGFRVIQKAYNGTDALKICRDF-QPDVIVLDIMLPD--ID 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+ R IR  S   ++ +S        +     G DD V KP   RE++ R+ A  RR 
Sbjct: 62  GLEVCRQIRQFSYCSILFLSSKNDDVDKILGLSWGGDDYVTKPFSPREVVFRIKAQLRRQ 121

Query: 120 K-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +               GP+R+  +       G+   L  RE  +L YLM N  K ++K +
Sbjct: 122 QYQTASPLQEGTSLTVGPLRIDKESCRAYKGGQEIGLTGREYLLLTYLMENADKIISKER 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++  ++G +  ++ +N +  HI  LR+K+ +       + + + LGY +
Sbjct: 182 LYEQVWGEY-SSICDNTIMVHIRHLREKIEDLPSQPQQLITVKGLGYKL 229


>gi|317495907|ref|ZP_07954270.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914084|gb|EFV35567.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 223

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  S++  +  + E+ L      +   I   ++       
Sbjct: 3   ILVVEDEKDLNRVITKHLKKNNYSVD--SCFDGEQALDYVLYGEYDLIITDIMMPKIDGY 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL + +R   +  P+I ++   SL   +   DSG DD + KP    E+LAR+  + RR  
Sbjct: 61  ELIKQLRVKGNSTPVIMLTAKDSLDDKILGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  +   + +    +      E   L  +E  +LEYL  N+   +++ QI + ++ 
Sbjct: 121 GFATNIIQVDDVVLDISKKQVTRSSESIVLTGKEYEVLEYLFKNKTGIISREQILNHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +D     N+++  +  +RKKL        + +KR LGY
Sbjct: 181 -YDYEGVSNIIDVIVKNIRKKLDVGSKKPIIHTKRGLGY 218


>gi|313673530|ref|YP_004051641.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940286|gb|ADR19478.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 222

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +++         G  +    +             D+  ++  + G KG ++
Sbjct: 4   ILIVEDEDALRELIAFNLTKAGYDVIESENANDALIFIEEITPDLIILDIMMPGLKGTQL 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L +     S +P+I IS   S    ++  + G DD + KP   + ++A++  + R+ +
Sbjct: 64  LQLLKRSPKFSNIPVIIISARSSESDIVEGLELGADDYITKPFSMKVLIAKIKILLRKKQ 123

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  E   I V  +     +  +   L  +E  +L + + +  K  +++Q+ S I+G
Sbjct: 124 EKTENIIEYKGIIVDLEKYKVFLNNKEITLTYKEFELLVFFLKHPKKVFSRSQLLSNIWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D  +    V+SH+S LRKKL +K   + + S   +GY +D
Sbjct: 184 -YDADIFTRTVDSHVSSLRKKLEDKG--NLIKSLPKVGYLLD 222


>gi|301053529|ref|YP_003791740.1| alkaline phosphatase synthesis response regulator [Bacillus
           anthracis CI]
 gi|300375698|gb|ADK04602.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 229

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 62  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V + +     +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHDEKTHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|237803881|ref|ZP_04591466.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331025861|gb|EGI05917.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 226

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +      G+ G  ++          L    R D+  ++  L   G    
Sbjct: 3   ILLIEDDTKTGEYLKKGLGESGYRVDWTQHGADGLHLALENRYDLIVLDVMLP--GIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++  ++RA   VP++ ++    LQ  +   + G DD + KP    E+L R+  I RR + 
Sbjct: 61  QIIEVLRARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R    Q +V  L  +E  +L  L+   G  +++ QI S ++ +
Sbjct: 121 READHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVMSRAQIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+        + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRSKIDLPYPVKLIHTVRGIGYVCEV 221


>gi|298493190|ref|YP_003723367.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298235108|gb|ADI66244.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 247

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TICQRLRRDERTAEIPVLMLTALSQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G + +  +  +    GE   L   E  +L  L+   G+ V+ ++
Sbjct: 122 TDRIPQAAKHSEILNYGSLTLVPERFEAIWFGETVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILREVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|183222571|ref|YP_001840567.1| putative response regulator receiver [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189912606|ref|YP_001964161.1| response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167777282|gb|ABZ95583.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780993|gb|ABZ99291.1| Putative response regulator receiver, transcriptional regulatory
           protein (C-terminal) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 224

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++G   E  ++             D   ++  L G G   +
Sbjct: 3   ILIVDDEEDIAGLIQFHLEEEGFQTEVCHNGMEVLPRLEKNLPDGIILDLMLPGIG--GM 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + I+    Q+P++ ++        +   + G DD + KP + RE++ARV ++ RR  
Sbjct: 61  DLCKRIKEKYPQIPILMVTAKTGETDVVLGLELGADDYIRKPFNIRELVARVRSVTRRTT 120

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +   +    TG I++        V+G    L   E ++L+    N G   ++ ++   
Sbjct: 121 DPSQEVQGTITTGKIQINPTAHKVFVEGTEIDLTLIEFKLLQLFAGNPGVAFSRDKLLDR 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G  D  V +  V+ +I +LR KL      + +++ R +GY  
Sbjct: 181 IWGK-DVFVTDRTVDVNIKRLRDKL--LSEKERLETIRGVGYRF 221


>gi|78066346|ref|YP_369115.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77967091|gb|ABB08471.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 221

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ D   A    +G   +    +            D   ++  L   G    
Sbjct: 3   ILLVEDDVMLADAVCAGLRQNGWRADWSADVPAARLALVGHGYDAVLLDLQLP--GASGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +RA+    P++ ++    L   +   D+G DD + KP    E+ AR+ A+ RR +
Sbjct: 61  TLLAAMRANYDPTPVLIVTARDQLSDRIRGLDAGADDYLVKPFQLDELYARLRALTRRSQ 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + R     + V    ++    GE   L   E R L  LM  +G+ V +TQ+   +YG
Sbjct: 121 GRVSERLIYRDVHVDPARKEVTRAGEPVALSIHEYRTLLALMERQGRVVTRTQLEERVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D A+E N +  +I +LR+KL    G + + +    GY +
Sbjct: 181 N-DSAIESNTIAVYIHQLRRKL----GDELIVTVHGFGYRV 216


>gi|27366756|ref|NP_762283.1| transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|320158641|ref|YP_004191019.1| copper-sensing two-component system response regulator CusR [Vibrio
           vulnificus MO6-24/O]
 gi|27358323|gb|AAO07273.1| Transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|319933953|gb|ADV88816.1| copper-sensing two-component system response regulator CusR [Vibrio
           vulnificus MO6-24/O]
          Length = 220

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 103/223 (46%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E  ++    E      + D+  ++  L   G+ + 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECLHAERISEVESLWPQADLVILDRQLPD-GDSIS 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            LP   +    VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  R    
Sbjct: 62  HLPGW-KKTKNVPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQLRSPES 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S+++ ET  + +    R+   +GE   L R E  +L +L +N G+   + ++   +
Sbjct: 121 SEQGSSDKVETENLVIDKSTREVFFKGEQITLTRTEFDLLLFLASNLGRVFTRDELLDHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++       V++H+ +LR+KL        +++ R +GY +
Sbjct: 181 WG-YNHFPTTRTVDTHVLQLRQKLAGLE----IETLRGVGYKM 218


>gi|145221065|ref|YP_001131743.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315441964|ref|YP_004074843.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145213551|gb|ABP42955.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315260267|gb|ADT97008.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 248

 Score =  218 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V+          G  +    + +    L SS   D   ++  +       + 
Sbjct: 26  LMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPE--LDGVA 83

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA  + +P+  +S   ++   +   ++G DD + KP    E++AR+ A+ RR   
Sbjct: 84  VVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHH 143

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+  ++T   G + + +  R   V GE   L +RE  +L  L  N G  +++ ++   ++
Sbjct: 144 SDPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVW 203

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D  V+ NV +  +S LR+KL        + + R +GY +
Sbjct: 204 G-YDFDVDTNVADVFVSYLRRKLERDGLPRVIHTVRGIGYVL 244


>gi|303242250|ref|ZP_07328738.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590238|gb|EFL59998.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G S++  N  E    L     E+   +   ++  G    
Sbjct: 4   ILIVEDDHSIGELEKDYLEINGFSVKICN--EGVSGLNCIKEEEFDLLILDIMLPGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R    +P++ +S        +     G DD + KP    E++ARV A   + + 
Sbjct: 62  EILKRVRDVKDIPILLVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVNAHISKYER 121

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N       + +  + R   V G+   + ++E  +L +++ N  +   + +
Sbjct: 122 LKSKYGNENPNETFTIRGLEIQKESRRVFVNGKELNMAQKEYELLLFMVQNPNRVFGREE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +F  I+G FD   +   V  HI+++R+K+  +      V++    GY  
Sbjct: 182 LFERIWG-FDSLGDAATVTVHIARIREKIETDPSNPQYVETVWGAGYRF 229


>gi|300917087|ref|ZP_07133778.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300415654|gb|EFJ98964.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
          Length = 240

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGHLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|225017545|ref|ZP_03706737.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
 gi|224949695|gb|EEG30904.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
          Length = 231

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  +++D  +      G ++   ++ E        A+ D       ++  G    
Sbjct: 4   ILVCEDEDVIRDFVVINLERSGYTVVDVSNGEDALKAFDEAKGDFDIALLDIMMPGIDGF 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R  S  + +I ++        +     G DD V KP    E++ARV AI+RR+ 
Sbjct: 64  EVCKRLRERSSTIGIIMLTAKTQEMDKVRGLMLGADDYVAKPFSPSELVARVDAIHRRVN 123

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  N+ +      +GP  +    R     G    L + E +I+E  M N+   + +T I 
Sbjct: 124 MIANQPQQVKSIVSGPFELNPKSRILTKNGVPVDLTQVEYQIMELFMKNQNVALDRTHIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           + I+G  +   +  +V+ +I +LR K+ +       + +    GY   WN
Sbjct: 184 NEIWG-DNYYGDVKIVDVNIRRLRMKVEDEPSSPKYILTIWGFGYK--WN 230


>gi|163758770|ref|ZP_02165857.1| probable two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
 gi|162284060|gb|EDQ34344.1| probable two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
          Length = 225

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 103/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  ++ F   + ++ L ++  +D   +    +  G   L
Sbjct: 3   ILLLEDDRDLGPWITKGLREAGHVVDHFP--DGKDALIAAMGQDYDLLILDRMVPGLDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA     P + ++    + + ++ F++G DD + KP    E+ ARV A+ RR +
Sbjct: 61  AVLKSLRASKNTTPALFLTALGEVDSRVEGFEAGGDDYLTKPFAFVELSARVNALGRRRE 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          +++    R  E QG+   L  +E ++LEY M   G+ V +T +   
Sbjct: 121 GTQDSEPSVLHYAGLKLDLLARSCERQGQPIDLMAKEFKLLEYFMRRPGRLVTRTMLLEQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ +       +VVE+HIS+LR K+      + + ++R  GY  
Sbjct: 181 VWDMS-FDPTTSVVETHISRLRAKVDKPFDEELIRTRRGEGYVF 223


>gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeovibrioides DSM 265]
          Length = 236

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G       + E      S    D+  ++  L   G   
Sbjct: 5   LLLVVEDDRNLAKLVGYNLEKAGYKCLFSENGEDAFDQLSRRSFDLVLLDVMLP--GIDG 62

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ R IR H     +P+I ++        +  F+ G+DD V KP   RE+  R+ A+ +
Sbjct: 63  FEVCRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLK 122

Query: 118 RLKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +          + G + V        + G+   L   E ++L  L+  +G+  ++  +
Sbjct: 123 RDRRQGGVFREALKAGGLEVDIARHSVTLDGQELVLTLMEFKLLVALLKRKGQAQSREML 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S ++ + D ++    +++HI++LR+KL        + + R LGY  D
Sbjct: 183 LSDVWDV-DRSINTRTIDTHITRLREKLGESGRQ--IKTVRGLGYKFD 227


>gi|266619511|ref|ZP_06112446.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288868919|gb|EFD01218.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 237

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++G        G  +  F + +  E L+   +E++      ++      +
Sbjct: 6   ILLVEDDKEIREGVEIYLKSQGYEV--FQAADGIEGLKILDQEEIHLAIVDVMMPRMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD ++KP    E+LARV +  RR + 
Sbjct: 64  TMTVKLREKYDFPVIILSAKTEEVDKIMGLNIGADDYISKPFTPMELLARVNSQLRRYRK 123

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        +N    G + +  D  +  V G+   L   E +IL  LM N G+  +
Sbjct: 124 YLDMLEAKELKEKSNIYVIGGLELNEDTVEVTVDGKPAKLTPIEFKILALLMKNPGRVFS 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             +I+  ++   + A+  + +  H+ K+R+K+  N      +     +GY I+
Sbjct: 184 AEEIYERVWN--ERAINTDTIMVHVRKIREKIEINPKEPKYLKVVWGVGYKIE 234


>gi|255319016|ref|ZP_05360238.1| transcriptional regulatory protein QseB [Acinetobacter
           radioresistens SK82]
 gi|255303921|gb|EET83116.1| transcriptional regulatory protein QseB [Acinetobacter
           radioresistens SK82]
          Length = 221

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           VL++D   +     A      +S+E  ++    ++    +  D+  ++  L  +    LE
Sbjct: 4   VLVEDDPYIAHSICAALDFLNISVEHVSTASAADYFIRHSAVDLCLLDLGLPDQ--DGLE 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R  R      P++ ++     +  ++  + G DD + KP    E++AR+ A+ RR + 
Sbjct: 62  LLRKWRQDQIHTPILVLTARIQTRQCIEALNLGADDYLTKPFELDELVARLHALTRRHRG 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+N  +   + +  D ++   Q +   L RRE  +LE LM++  + +   Q+   +YG 
Sbjct: 122 FSSNVLQFEDLSLNQDTQEVFYQHQAIQLSRREYSLLETLMSHPNQILKNEQLLDKLYGY 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  +E N +  HI  LR+KL      D + + R +GY  
Sbjct: 182 QDS-IESNALNVHIYHLRQKLNA----DFIQTIRGVGYMF 216


>gi|268591078|ref|ZP_06125299.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
 gi|291313885|gb|EFE54338.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
          Length = 223

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 99/220 (45%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    +        + G  ++  N      +        +  ++  L   G    
Sbjct: 3   ILLIEDHLKTQVWVKNGLEEAGFLVDVTNDGRDGLYFALENSYQLVILDIMLP--GMNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R    +P+I ++   ++   +   + G +D + KP    E+LARV    +  + 
Sbjct: 61  EILKILRTAKNIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKINQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++       +++     D E  G+   L R+E  +L + + +  + + +T I S ++G+ 
Sbjct: 121 ASTTITIADLKIDLTRHDVERAGKKITLTRQEFSLLLFFVLHCDEILPRTLIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + N+++  I +LRKK+ ++     +++ R +GY ++
Sbjct: 180 DFESDTNIIDVAIRRLRKKIDDEFDVKLIETIRGMGYRLN 219


>gi|254387470|ref|ZP_05002709.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294815144|ref|ZP_06773787.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443505|ref|ZP_08218239.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701196|gb|EDY47008.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294327743|gb|EFG09386.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 221

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +       + S    D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLALSLARGLTAEGYAVDVVHDGLEGLHMASEGVHDLVILDIMLP--GMNGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA    +P++ ++         +  D+G DD + KP  +  ++ARV A+ RR  
Sbjct: 61  RVCAALRAAGHDMPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +     G +RV +  R   V      L  +E  +LE L    G  V+K QI   ++
Sbjct: 121 RAGGSPVLAVGDLRVDTAARRVFVGETETTLTAKEFAVLEQLAVRAGDVVSKAQILEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F    + N++E +IS LR+KL    G   + + R  GY +
Sbjct: 181 D-FAYDGDPNIIEVYISSLRRKL----GAPRIQTVRGAGYRL 217


>gi|170727718|ref|YP_001761744.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813065|gb|ACA87649.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 230

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        D   +++  +  E   +     R D   I+  L       +
Sbjct: 3   ILLVEDDIELQTNLKQHLLDANYTVDVASDGEIGLFQGCEYRYDAGIIDVGLP--KMDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L   +R      P++ ++   S Q  ++  D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  ALITTLREKEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFQPEELVARLKALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     GP  + +   + +    +  L   E ++ EY M + G+  +KT +   IY 
Sbjct: 121 GKASPLIHNGPFSINTSSLEVKKGERLITLSGSEYKLFEYFMLHPGEVKSKTVLTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +LRKKL     +  +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNQYGLIETLRGQGYRL 220


>gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A  ++       + G  ++   +      L  +   D+  ++  L        
Sbjct: 3   LLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEHFDLIVMDIMLPD--LDGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L   +R      P++ ++   S+   +   +SG DD + KP    E+LARV  I RR  
Sbjct: 61  RLLGSLREAGNATPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRRGL 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + +S N+   G + +    R     G    L  +E  +LE  +  +G+ + ++ I S ++
Sbjct: 121 VPLSGNQLSVGDLTLDISRRSARRGGSEIQLTTKEFTLLELFVRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV++  + +LR K+ +      + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIDVAVRRLRMKVDDGHDIKLIQTVRGMGYRLDV 223


>gi|77359341|ref|YP_338916.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874252|emb|CAI85473.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 229

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G +++  +  E    L  +    +  ++  L        
Sbjct: 3   LLMIDDDTGLCELLSEYLTAQGFNVQSVHDGEQGLKLAQANDYALILLDVMLPT--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R     P+I ++        +   + G DD + KP +HRE+LARV AI RR++ 
Sbjct: 61  EVLKQLRQTKLTPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIEH 120

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+N+     + +    R+  ++     L   E  IL  L    G+ V+K QI 
Sbjct: 121 ITTMNTTSSNKLVVNGVTINLAAREALIKQTTLTLTGTEYEILALLAKRAGEVVSKEQIS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + G    + +   ++ H+S +RKK+   L  + + + R  GY  
Sbjct: 181 EDVLGRRLASFD-RSIDMHVSNIRKKIAEHLPNELIKTIRGTGYVF 225


>gi|152969690|ref|YP_001334799.1| DNA-binding transcriptional regulator PhoP [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206579731|ref|YP_002239238.1| transcriptional regulatory protein PhoP [Klebsiella pneumoniae 342]
 gi|288936097|ref|YP_003440156.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290510851|ref|ZP_06550221.1| two-component system, OmpR family, response regulator PhoP
           [Klebsiella sp. 1_1_55]
 gi|330016190|ref|ZP_08308420.1| virulence transcriptional regulatory protein PhoP [Klebsiella sp.
           MS 92-3]
 gi|150954539|gb|ABR76569.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206568789|gb|ACI10565.1| transcriptional regulatory protein PhoP [Klebsiella pneumoniae 342]
 gi|288890806|gb|ADC59124.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289777567|gb|EFD85565.1| two-component system, OmpR family, response regulator PhoP
           [Klebsiella sp. 1_1_55]
 gi|328529475|gb|EGF56380.1| virulence transcriptional regulatory protein PhoP [Klebsiella sp.
           MS 92-3]
          Length = 223

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++        ++       D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQELGHQVDAAEDAREADYYLGEHLPDIAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  LIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  +   L   E  I+E L+ NRGK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAEYPQDVITTVRGQGYLFE 221


>gi|110802073|ref|YP_699510.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682574|gb|ABG85944.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 227

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++      F  +   +    S E         + D++ ++  L   G    
Sbjct: 3   ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLP--GMNGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    ++ +I ++        +     G DD V KP +  EI  RV A+ RRL+
Sbjct: 61  EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N        E    ++    +    +     +  +E  +++  M N GK   + ++ +
Sbjct: 121 GINEEDNNDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            ++G+ D   +  +V+ +I +LR K+         +++    GY 
Sbjct: 181 LVWGI-DFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYR 224


>gi|88860809|ref|ZP_01135446.1| probable two-component response regulator transcription regulator
           protein [Pseudoalteromonas tunicata D2]
 gi|88817404|gb|EAR27222.1| probable two-component response regulator transcription regulator
           protein [Pseudoalteromonas tunicata D2]
          Length = 227

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V          +G  +    + + +E L+ +   D   I   ++      L
Sbjct: 3   ILLVEDDDRVASFLERGLRAEGYFI--VRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     VP+I ++     Q  +     G DD V KP  + E+LAR+ A+ RR  
Sbjct: 61  EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + N  E GP+          +  E   L  +E  ILE LM N GK +++ +I S +
Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G+ +     NVV+ +I KLRKKL     G   +++KR +GY ++
Sbjct: 181 WGM-EMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRLN 224


>gi|325847791|ref|ZP_08170013.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480809|gb|EGC83862.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 237

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +     +    +   +  F + + +E L+    ED+  +   L+       
Sbjct: 6   ILLIEDEKGISKIMKSYLEKEDYEV--FQAFDGKEGLEIFESEDIDLVLLDLMIPKISGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S VP+I ++   S    ++    G DD V KP   +E++ R+  + RR++ 
Sbjct: 64  DLIKEIRNKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIEK 123

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N       +   G + +  +       GE   L + E +I++ L +N  K   + +I  
Sbjct: 124 YNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEIIE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
             +G FD    +  +++HI  +R+K+ +       + +   +GY 
Sbjct: 184 ITFG-FDYDAYDRAIDTHIKNIRQKIEDNPKKPSYIKTIYGMGYK 227


>gi|228990825|ref|ZP_04150790.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228769351|gb|EEM17949.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 250

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D  +     +    +    +      L  +   D+  ++  L       
Sbjct: 17  ILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVMLPD--IDG 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
            EL R IR ++  P++ ++   S    L     G DD + KP +  E+ AR+    R   
Sbjct: 75  FELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRGQS 134

Query: 118 ----RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  ++        ++       V G+      +E  +L +L  +  +     Q+
Sbjct: 135 MLLNNRQAEHSNLHFESFSLYPSEGLITVNGKSVHCTAKELELLTFLCTHPNRIFTAEQL 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +  ++GL     ++  V  HISKLRKK+  +      + + R +GY  
Sbjct: 195 YEQVWGLT-SMGDDKTVVMHISKLRKKIEEDPKSPTYIVNLRGIGYKF 241


>gi|315635865|ref|ZP_07891127.1| two component response regulator [Arcobacter butzleri JV22]
 gi|315479844|gb|EFU70515.1| two component response regulator [Arcobacter butzleri JV22]
          Length = 225

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       ++   ++   + +   +L S    D+  ++  L  K    +
Sbjct: 6   ILIIEDDLKIINFLKKGLEEECYIVDFSTNGDEGLYLASINTYDLILLDIMLPIK--DGI 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+ + Q P+I ++   S++  +   D G +D + KP    E+LAR+    R   
Sbjct: 64  EVCKSLRSSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQLRITT 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +     + +    +      +   L  +E  +LEYL+ N+ + +++T I  A+   
Sbjct: 124 TTQTKLSIADLELDLLNKTASRANQNIVLTAKEFALLEYLIKNKNRVLSETTINEALSSF 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  +  N+V  +I +LR K+        + + R +G+ I
Sbjct: 184 EDSNI-SNIVNVYIYRLRNKIDKNFENKLIKTVRGIGFKI 222


>gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 237

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G      N+         S   D   ++  L       L
Sbjct: 4   ILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPD--LNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+K+
Sbjct: 62  EIARRVRQSKATPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAK 170
                          +   + + +  R      G+   L +RE  +L  L+ N+   V +
Sbjct: 122 EKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 182 DQLLNKIWGP-ESNIETNVVEVYVRYLRNKIDIPGQPSYIKTVRGTGYMV 230


>gi|291482632|dbj|BAI83707.1| hypothetical protein BSNT_00453 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 230

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +      E    L      D+  ++  L       +
Sbjct: 4   ILLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLP--KLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  +IIR  S VP++ IS              G DD + KP    E+ ARV A  RR   
Sbjct: 62  DFLKIIREKSNVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N       + +  D       GE   L   E ++L    +N  K   K QI+
Sbjct: 122 YSAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNSKKVFTKEQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++   +   ++N++  H+ +LR+K+ +       + +   +GY +
Sbjct: 182 RSVWNE-EYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 227


>gi|28870763|ref|NP_793382.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|71737671|ref|YP_275453.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|213968943|ref|ZP_03397083.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|289625628|ref|ZP_06458582.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646477|ref|ZP_06477820.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298487733|ref|ZP_07005774.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|301382821|ref|ZP_07231239.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302062977|ref|ZP_07254518.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302134596|ref|ZP_07260586.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|302187955|ref|ZP_07264628.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae 642]
 gi|28854011|gb|AAO57077.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|71558224|gb|AAZ37435.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|213926242|gb|EEB59797.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|298157825|gb|EFH98904.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320323963|gb|EFW80047.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320328099|gb|EFW84104.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330869074|gb|EGH03783.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330875974|gb|EGH10123.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330876559|gb|EGH10708.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
 gi|330953840|gb|EGH54100.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           Cit 7]
 gi|330986579|gb|EGH84682.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331015882|gb|EGH95938.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 229

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +      G+ G  ++          L    R D+  ++  L   G    
Sbjct: 3   ILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLP--GIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++  ++RA   VP++ ++    LQ  +   + G DD + KP    E+L R+  I RR + 
Sbjct: 61  QIIEVLRARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R    Q +V  L  +E  +L  L+   G  +++ QI S ++ +
Sbjct: 121 READHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+        + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRSKVDLPYPVKLIHTVRGIGYVCEV 221


>gi|308070884|ref|YP_003872489.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305860163|gb|ADM71951.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 226

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++ D   ++D       ++G   +E  N +E  + ++S + E +  +++ L       
Sbjct: 4   ILVVGDDTEIRDVIHVYLRNEGYFVIEAANGMEALDLIRSISFE-LVILDSMLPQ--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +     IR  S  P+I +S        +     G DD + KP +  E+LARV A  +R  
Sbjct: 61  INACIKIREISNTPIILLSAKEEDIDKIVGLTPGADDYMIKPFNPLELLARVKAHLQRQS 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  N+      + +        ++     L   E  ILE L ++ G+  +  +I+ 
Sbjct: 121 LIGKEEFNSLIFFKDLVIDKTKHSVTLKENNISLTPLEFSILELLASHPGQVFSFDKIYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +++        +N V  HI  LR+KL         + +   +GY ID
Sbjct: 181 SVW-EDPIGYSDNTVMVHIRNLREKLEKSPRDPQYIKTVWGVGYKID 226


>gi|308235379|ref|ZP_07666116.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
 gi|311114873|ref|YP_003986094.1| response regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946367|gb|ADP39071.1| response regulator [Gardnerella vaginalis ATCC 14019]
          Length = 246

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 16/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      +          + + D+  ++  L       +
Sbjct: 14  ILVVEDEPDLATAIAQRIVARGWKARVVSDGVSAVKAALTLKPDLIIMDVMLPV--MDGI 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R I +   +P++ ++   +    L    +G DD V KP   RE++AR AAI RR++ 
Sbjct: 72  EATRRIVSRYPIPVLMLTARDAESDKLAGLSAGADDYVTKPFSPRELIARCAAILRRVER 131

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         N   + G + +    R   + G+       E  +L     +    + +  
Sbjct: 132 ATLIANRAQYNALFKFGDLIIDPRQRLVTLNGKEIHFTPTEFSLLTTFAKHPHDVLKRET 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D +     V+SH+  LR K+    G   + +   +GY+ +
Sbjct: 192 LLEEVWDWPDASG-TRTVDSHVKSLRHKI----GSSWIRTIHGIGYAFE 235


>gi|170076771|ref|YP_001733409.1| OmpR family two-component response regulator [Synechococcus sp. PCC
           7002]
 gi|169884440|gb|ACA98153.1| two-component system response regulator, OmpR family [Synechococcus
           sp. PCC 7002]
          Length = 227

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 6/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++     +   +G ++    + +    L      D+  ++  L       +
Sbjct: 3   ILLVDDERELRGALSQVLQREGHTVALAETGQQGLELACDQEYDLLILDWMLPQ--YSGV 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+     P++ ++   ++   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  EICQRVRSLGRTTPILFLTAKDTVDDRVSGLDAGADDYLVKPFELRELLARVRALLRRSP 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                NR     + +    +     G    L  RE ++L Y M +  + +   QI+  ++
Sbjct: 121 GGEPPNRLRIADLELDVANQMAYRAGRAIRLSDRELQLLSYFMEHPAQLLTHEQIYQHLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
              DE+   NV+ + +  LR+K+  K     + +    GY   + N
Sbjct: 181 QDGDESPSSNVLAALVRLLRRKVEAKGDRPLIHTIYGKGYYFGEQN 226


>gi|186682188|ref|YP_001865384.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464640|gb|ACC80441.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 244

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 109/237 (45%), Gaps = 20/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQS-SAREDVSAIEAFLIGKGEK 59
            +L++D A +      +   +   ++ F +  +  ++L++      ++  +  L   G  
Sbjct: 3   LLLVEDEADLGAAIKQVLSHEAYVVDWFLDGSQAWQYLETGWTEYTLAIFDWMLP--GVS 60

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +EL + +R+    +P++ ++    ++  +   DSG DD + KP    E+LAR+ A+ RR
Sbjct: 61  GVELCKWLRSRHLTLPVLMLTAKDRMEEKIIGLDSGADDYLIKPFGMAELLARLRALQRR 120

Query: 119 L---------KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANR 164
                     +V   R + G + +     +   Q       VF L  +E ++LEY M + 
Sbjct: 121 ASYVGATLTPQVQPRRLQVGCLILNYSTHELTRQYSHREKRVFSLTVKEFQLLEYFMRHP 180

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +++ QI + ++ +  E V  NVV + I  LR+KL  +     +++   +GY ++
Sbjct: 181 NHIISRDQIINQLWEIGAEPV-SNVVAAQIRLLRRKLGEEDSESLIETIYGVGYRLN 236


>gi|319442462|ref|ZP_07991618.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 244

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D   A        +   N       +    + D   ++  +   G     
Sbjct: 21  LVVDDEANIADLIKARLEFQDFDVRTANDGASALEIAKDFQPDAYILDVMMP--GMDGFT 78

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R      P++ ++   ++   +     G DD V KP    E++ R+  I RR++ 
Sbjct: 79  VLNKLREAGDEAPVLFLTAKDAVDDRIHGLTLGADDYVTKPFALEEVITRLRVILRRVQP 138

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + +  D  +    G+V  L   E ++L YL+ N    V+K +I  A+
Sbjct: 139 EEKEDESLITYADLTLSDDMHEVTKGGQVVDLSPTEFKLLRYLLINAEVVVSKAKILDAV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVES++S LR+K+  +     + + R +GY +
Sbjct: 199 W-EYDFGGDGNVVESYVSYLRRKIDTQ-EPHLIHTVRGVGYVL 239


>gi|290769853|gb|ADD61625.1| putative protein [uncultured organism]
          Length = 225

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 111/226 (49%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++         G  ++     E    L ++ R D+  ++  L       +
Sbjct: 3   LLLIEDEPTLRESVAKKLRRSGYEMDDCGDGETALELLAAERYDLVLLDLNLPKV--NGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R    + P++ +S    +   ++  D+G +D + KP H  E+ ARV ++ RR  
Sbjct: 61  TVLRTLRKTDLETPVLILSARSEISDKVEGLDAGANDYLAKPFHLAELEARVRSLTRRQF 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +     G +   +  R     G+  PL R+E  +LEYL+ ++G+ V++ ++   ++ 
Sbjct: 121 IQRDVCLRCGRLTFDTKSRLAMADGQPIPLTRKESGVLEYLLLHQGRPVSQEELIEHVW- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D +V+   N +  HIS LRKKLR  LG+DP+ ++   GY ++ N
Sbjct: 180 --DSSVDAFSNSIRVHISALRKKLRTALGYDPIRNRIGEGYELEEN 223


>gi|30023068|ref|NP_834699.1| two-component response regulator VanRB [Bacillus cereus ATCC 14579]
 gi|30265077|ref|NP_847454.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42784219|ref|NP_981466.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47530583|ref|YP_021932.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49480366|ref|YP_039053.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52140496|ref|YP_086334.1| response regulator [Bacillus cereus E33L]
 gi|65317022|ref|ZP_00389981.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118480119|ref|YP_897270.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|165870904|ref|ZP_02215556.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634910|ref|ZP_02393228.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167639953|ref|ZP_02398221.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685986|ref|ZP_02877209.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707061|ref|ZP_02897518.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652353|ref|ZP_02934856.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567210|ref|ZP_03020125.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033021|ref|ZP_03100434.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040431|ref|ZP_03107731.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196047515|ref|ZP_03114725.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206970050|ref|ZP_03231003.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206978207|ref|ZP_03239087.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|218234504|ref|YP_002369838.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218906232|ref|YP_002454066.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222098485|ref|YP_002532543.1| response regulator [Bacillus cereus Q1]
 gi|225867018|ref|YP_002752396.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227817807|ref|YP_002817816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601053|ref|YP_002869274.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687368|ref|ZP_05151225.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725381|ref|ZP_05187164.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254733723|ref|ZP_05191439.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740561|ref|ZP_05198252.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753177|ref|ZP_05205213.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761520|ref|ZP_05213541.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|270000517|ref|YP_003329022.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|296505470|ref|YP_003667170.1| two-component response regulator VanRB [Bacillus thuringiensis
           BMB171]
 gi|301056524|ref|YP_003794735.1| response regulator [Bacillus anthracis CI]
 gi|29898628|gb|AAP11900.1| Two-component response regulator vanRB [Bacillus cereus ATCC 14579]
 gi|30259754|gb|AAP28940.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42740150|gb|AAS44074.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47505731|gb|AAT34407.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49331922|gb|AAT62568.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51973965|gb|AAU15515.1| response regulator [Bacillus cereus E33L]
 gi|118419344|gb|ABK87763.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|164713413|gb|EDR18938.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167512034|gb|EDR87412.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529660|gb|EDR92409.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128164|gb|EDS97034.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670450|gb|EDT21190.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082359|gb|EDT67425.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561714|gb|EDV15684.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994450|gb|EDX58405.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196021629|gb|EDX60326.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028563|gb|EDX67170.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206734627|gb|EDZ51796.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206743566|gb|EDZ54993.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217067588|gb|ACJ81838.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218162461|gb|ACK62453.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218536647|gb|ACK89045.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221242544|gb|ACM15254.1| response regulator [Bacillus cereus Q1]
 gi|225786171|gb|ACO26388.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227003747|gb|ACP13490.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265461|gb|ACQ47098.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|296326522|gb|ADH09450.1| two-component response regulator VanRB [Bacillus thuringiensis
           BMB171]
 gi|300378693|gb|ADK07597.1| response regulator [Bacillus cereus biovar anthracis str. CI]
 gi|324328974|gb|ADY24234.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942852|gb|AEA18748.1| two-component response regulator VanRB [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 221

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           +++   +      L      D+  ++  L        
Sbjct: 4   ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPD--IDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR   
Sbjct: 62  SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 220


>gi|257093278|ref|YP_003166919.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045802|gb|ACV34990.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 235

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+++D A ++         +G  +   +S++       + R D+  ++  L       +
Sbjct: 8   IVVVEDEANIRRFIKLALESEGFQVFEADSVKRGLIEAGTRRADLVVLDLGLPD--GDGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R +RA S++P++ +S   +    +   D+G DD + KP    E+LARV A  RR   
Sbjct: 66  DFIRDLRAWSEIPVLVLSARTTEIDKVAALDAGADDYLTKPFGAAELLARVRAHLRRRSR 125

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S      AE G IRV    R  E  G    L   E R+L YL+AN    +   Q+   ++
Sbjct: 126 SAGGTALAEFGSIRVDLARRTVERDGAPLHLTPIEYRLLSYLIANPDCVLTHRQLLKNVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           G      + + V  ++  LRKK+ +       + ++  +GY  
Sbjct: 186 GPGHVE-DSHYVRVYMGNLRKKIEDDPARPKHLRTEAGVGYRF 227


>gi|229170768|ref|ZP_04298394.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228612717|gb|EEK69916.1| Two-component response regulator vanRB [Bacillus cereus AH621]
          Length = 214

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++            +   +  +  E ++   ++    I   ++       E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVAS--DGLEGMKQFNKQSFDLILLDVMMPNLNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   + +
Sbjct: 60  KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N      + V  D     V     PL  +E  IL+ L+ N  K + +  I   I+G ++
Sbjct: 120 DNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A +  ++++H+  +RKKL        + + + +GY ID
Sbjct: 179 YAGDTRMIDTHMKNIRKKLD----IPYIKTVKGIGYKID 213


>gi|186475237|ref|YP_001856707.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191696|gb|ACC69661.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 220

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +G       +G +++     E           D+  ++  L  +    L
Sbjct: 3   ILLVEDDRMIAEGVRKALRGEGFAVDWVQDGESALNAADGQPYDLVLLDLGLPKR--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +R    Q+P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRTLRTRGHQLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +    G + +        + G    L  RE  +L  L+A  G  ++K+Q+   +YG
Sbjct: 121 GRSESTIRHGNLTLDPASHQVTLDGAPVALSAREFALLAALLARPGAVLSKSQLEEKMYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +  N VE +I  LRKKL    G + + + R LGY I
Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GAELIRNVRGLGYMI 216


>gi|307945464|ref|ZP_07660800.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4]
 gi|307771337|gb|EFO30562.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4]
          Length = 228

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A           + G S +     E       +   DV  ++  L  +    L
Sbjct: 4   LLIIEDDAEAAAYLAKGLDELGHSADRAEDGEAGLEQAMAGSYDVLIVDRMLPKR--DGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R+     P++ +S    +   +    +G DD + KP    E+ ARV A+ RR K
Sbjct: 62  SVIESLRSAGDHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELQARVEALARRPK 121

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S +     + G + +              PL  RE R+LEYLM + G+ V +T +   +
Sbjct: 122 ASGDLETTYQVGDLVLDRLAHSCRRGDVEIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR K+        + + R  GYSI
Sbjct: 182 W-EYHFDPQTNVIDVHISRLRAKIDKDFDKPLLQTIRGAGYSI 223


>gi|169828806|ref|YP_001698964.1| sensory transduction protein [Lysinibacillus sphaericus C3-41]
 gi|168993294|gb|ACA40834.1| Sensory transduction protein [Lysinibacillus sphaericus C3-41]
          Length = 224

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 96/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +G +       +    +  S   D+  ++  +        
Sbjct: 4   ILVADDDPNIRELVCLFLRKEGFATVEAEDGKEALSIYHSTPVDLVVLDIMMPT--MDGW 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R A++++PL+ ++        +  F+ G DD + KP    E+  RV A+ +R +
Sbjct: 62  TLCKELRRANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYR 121

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   + G I +           +   LP +E  +L  L    G+   + Q+   I+G
Sbjct: 122 IGYSQTIQLGAITLDRQTFKIMTGTDAITLPLKEFELLYKLAETPGQVYTREQLIDQIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + D A +   ++ HI +LR++    +    +++ R LGY ++ +
Sbjct: 182 I-DYAGDNRTIDVHIKRLRERF-ALIADFHIETIRGLGYRLEVD 223


>gi|15601007|ref|NP_232637.1| transcriptional regulator [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121587109|ref|ZP_01676885.1| transcriptional regulator [Vibrio cholerae 2740-80]
 gi|121729896|ref|ZP_01682322.1| transcriptional regulator [Vibrio cholerae V52]
 gi|147672355|ref|YP_001215826.1| transcriptional regulator [Vibrio cholerae O395]
 gi|153215292|ref|ZP_01949936.1| transcriptional regulator [Vibrio cholerae 1587]
 gi|153802077|ref|ZP_01956663.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|153802458|ref|ZP_01957044.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|153820149|ref|ZP_01972816.1| transcriptional regulator [Vibrio cholerae NCTC 8457]
 gi|153822561|ref|ZP_01975228.1| transcriptional regulator [Vibrio cholerae B33]
 gi|153826711|ref|ZP_01979378.1| transcriptional regulator [Vibrio cholerae MZO-2]
 gi|227811861|ref|YP_002811871.1| transcriptional regulator [Vibrio cholerae M66-2]
 gi|229506603|ref|ZP_04396112.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229510601|ref|ZP_04400081.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229517268|ref|ZP_04406713.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229526139|ref|ZP_04415543.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229605078|ref|YP_002875782.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254225977|ref|ZP_04919578.1| transcriptional regulator [Vibrio cholerae V51]
 gi|254850562|ref|ZP_05239912.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255745957|ref|ZP_05419904.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262168256|ref|ZP_06035954.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|298500087|ref|ZP_07009893.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9657634|gb|AAF96150.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548645|gb|EAX58695.1| transcriptional regulator [Vibrio cholerae 2740-80]
 gi|121628363|gb|EAX60865.1| transcriptional regulator [Vibrio cholerae V52]
 gi|124114831|gb|EAY33651.1| transcriptional regulator [Vibrio cholerae 1587]
 gi|124122026|gb|EAY40769.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|124122376|gb|EAY41119.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|125621511|gb|EAZ49844.1| transcriptional regulator [Vibrio cholerae V51]
 gi|126509301|gb|EAZ71895.1| transcriptional regulator [Vibrio cholerae NCTC 8457]
 gi|126519921|gb|EAZ77144.1| transcriptional regulator [Vibrio cholerae B33]
 gi|146314738|gb|ABQ19278.1| transcriptional regulator [Vibrio cholerae O395]
 gi|149739498|gb|EDM53732.1| transcriptional regulator [Vibrio cholerae MZO-2]
 gi|227011003|gb|ACP07214.1| transcriptional regulator [Vibrio cholerae M66-2]
 gi|227014908|gb|ACP11117.1| transcriptional regulator [Vibrio cholerae O395]
 gi|229336297|gb|EEO01315.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229345304|gb|EEO10277.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229353046|gb|EEO17986.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229356954|gb|EEO21872.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229371564|gb|ACQ61986.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254846267|gb|EET24681.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255735711|gb|EET91109.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262023499|gb|EEY42202.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|297542068|gb|EFH78119.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|327485449|gb|AEA79855.1| transcriptional regulator [Vibrio cholerae LMA3894-4]
          Length = 224

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHV--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + IRA    V ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|255281730|ref|ZP_05346285.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
 gi|255267797|gb|EET61002.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
          Length = 234

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              I+D   + +G       +G  +  F++        +  + D+  ++  L       L
Sbjct: 4   IFFIEDDEALAEGISFALEREGYQISCFSTCRAGREAIAERQPDLVLLDWNLPD--GDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R I   + VP++ I+        +   +SG DD + KP     + AR+AA+ RR   
Sbjct: 62  ALCREIAGTAGVPVLMITARDMEIDQVMCLESGADDYIAKPFSLAVLKARIAALLRRRGG 121

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++     +G IR+        ++     L   E ++L+Y + N+ + + K QI + ++ 
Sbjct: 122 QDSSGWLISGDIRLQEKEMKAYLKDRELDLSLTEFKLLKYFLENKNQVLLKEQILARVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
                VEEN +  +I +LR K+  +      + +   +GY  +
Sbjct: 182 SGGSFVEENTLMVNIRRLRTKVEEDASHPRYIKTVHGMGYLWE 224


>gi|159030857|emb|CAO88536.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     S +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDERTSDIPILMMTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +      V  L   E  +L  L+   G+ V+ + 
Sbjct: 122 TDRIPQAAKHSEILSFGPLTLVPERFEAVWFEGVVKLTHLEFELLHCLLQRHGQTVSPSD 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILKEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|152986792|ref|YP_001349246.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150961950|gb|ABR83975.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 229

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A   D       + G +++  ++      L  +   DV  ++  L   G     
Sbjct: 4   LIVEDEAKTADYLNRGLTEQGFTVDLADNGIDGRHLALNGEYDVIVLDVMLP--GIDGYG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK 120
           + R +R   Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALREQRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGGNH 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S ++     + +    R     G    L  +E  +L  L    G+ ++KT I   ++ +
Sbjct: 122 ESASQMRVADLSIDLLSRKVFRGGSRLELTAKEYALLCVLAQRSGEILSKTAIAELVWDI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 182 -NFDTDTNVVEVAIKRLRAKLDGPFENKLLHTIRGMGYVLE 221


>gi|29376802|ref|NP_815956.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583]
 gi|256960861|ref|ZP_05565032.1| regulatory protein vanRB [Enterococcus faecalis Merz96]
 gi|2500744|sp|Q47744|VANR_ENTFA RecName: Full=Regulatory protein vanRB
 gi|1209526|gb|AAB05622.1| response regulator [Enterococcus faecalis]
 gi|29344267|gb|AAO82026.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583]
 gi|256951357|gb|EEU67989.1| regulatory protein vanRB [Enterococcus faecalis Merz96]
          Length = 220

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   A   +    ++                  +  ++  L   G    
Sbjct: 5   ILLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIMLP--GMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  RA +  P++ ++     +  +  FD+  DD V KP   R +L RV A+ RR   
Sbjct: 63  ELLREFRAQNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +       G   PL R+E  IL  L+ N+G+ +    I S I+G +
Sbjct: 123 LAKEFRVGRLTLLPEDFRVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   + + V +HI  LR KL      + + + R +GY ++ +
Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEES 219


>gi|330879178|gb|EGH13327.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 220

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G +L+     +    L +   E    +   L        
Sbjct: 3   LLLVEDDRAIGQGIRVALNTEGYTLDWLE--DGLSALHALRSEPFDLLLLDLGLPRMDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +    QG    +   E ++L  LM   GK V + ++ + +YG
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E  I  LRKKL      + + + R +GY ++
Sbjct: 181 WQDK-VESNTLEVLIHNLRKKL----STELIRTVRGVGYLLE 217


>gi|323486881|ref|ZP_08092198.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum
           WAL-14163]
 gi|323690896|ref|ZP_08105189.1| response regulator [Clostridium symbiosum WAL-14673]
 gi|323399813|gb|EGA92194.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum
           WAL-14163]
 gi|323505063|gb|EGB20832.1| response regulator [Clostridium symbiosum WAL-14673]
          Length = 231

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + +  E L+      V+ +   ++  G   +
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFEV--IKAYDGFEALELLQNHSVNLMIIDVMMPGLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RTTLKVRETSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 121

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +  + G + +  + ++  V GE+  L   E  IL  L+ N GK  +  QI
Sbjct: 122 LGNMNTQAGGHIFKCGGLLINDENKEVTVDGELIKLTPIEYNILLLLVRNAGKVFSIDQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 182 YEEIWNE-EAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIE 229


>gi|16801578|ref|NP_471846.1| hypothetical protein lin2516 [Listeria innocua Clip11262]
 gi|16415038|emb|CAC97743.1| lin2516 [Listeria innocua Clip11262]
          Length = 231

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            ++ DD   + D       ++G ++  + + +  E   L    +  +  ++  +      
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTI--YQAYDGAEVWRLVQEKQPTLVILDIMMPE--MN 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R++R +    P++ +S        +    +G DD + KP +  E+  RV AI RR
Sbjct: 61  GLEVCRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++       VS ++   GPI V        V  +   L   E  IL  L +  G+  +  
Sbjct: 121 MQQMSQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            IF  I+           V  HIS LR KLR+   G + + +   +GY I+
Sbjct: 181 YIFEKIWQEK-ALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230


>gi|325289762|ref|YP_004265943.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965163|gb|ADY55942.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   +         ++G  +           +    +  ++ ++  +   G    E
Sbjct: 10  LLIDDEPNILQFLEMGLLNEGFDVMTAQDGMSAMTIVKQFQPHIAILDVMMP--GMDGFE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + ++++      +I ++    +   +     G DD + KP    E+LAR+ A   R +  
Sbjct: 68  VCKMLKKTENTAIIMLTAKDEVDDKVKGLTLGADDYMAKPFSFEELLARIHARV-RNQFP 126

Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           N       GP R+    ++      V  L   E  +L +++ N+G  ++KT+I   ++G 
Sbjct: 127 NLLGEVVIGPFRIDDRRKEIFYHQVVLELSPTEYELLRFMVLNQGLVLSKTKILDKVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +EN+VE +I  LR KL +K     + + R  GY +D
Sbjct: 186 YDFVGDENIVEVYIRSLRDKLNDK-EHKLIRTLRGSGYRVD 225


>gi|315092676|gb|EFT64652.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
          Length = 236

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S            +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLP--GRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
            + + IR  S VP+I ++        +    +G DD V KP    E++AR+ A  R    
Sbjct: 68  RICQDIRRESGVPIIMLTARSDTPDVVQRLGAGADDYVCKPFRSAELIARIRARLRTPVA 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 QREEGEVITVGDLTIDPAAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G +    +  +V  H+ +LR K+ RN      + + R +GY I+
Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230


>gi|255525895|ref|ZP_05392822.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255510389|gb|EET86702.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 231

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  +  +          ++   +  ++  +   G    
Sbjct: 5   ILIIDDDKELCLLLQKSVSSENIEADCCHFGTAGLSALKNSEYQLVVLDVMMP--GIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E    IR  S VP++ ++        +    +G DD + KP +  E +ARV ++ RR   
Sbjct: 63  ETLERIRKKSSVPILMLTSKNDNGCKVRGLRAGADDYLTKPFNIDEFIARVISLIRRYTR 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V  ++ +   + +  D R   +  E   LP +E  IL Y   N+GK + K QI+ 
Sbjct: 123 FNPNGVQASKLDYDGLIIDLDSRTIMIHNETLELPPKEFDILLYCAKNQGKILTKKQIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            ++G      + N + + IS++RKK+         + + + +GY  +
Sbjct: 183 EVWGEPYAYDDSN-IMALISRIRKKIEKTPSKPTFIQTVKGIGYRFN 228


>gi|152973211|ref|YP_001338357.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238892871|ref|YP_002917605.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150958060|gb|ABR80090.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545187|dbj|BAH61538.1| copper resistance two-component system response regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 227

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  ++  D+  ++  L        
Sbjct: 3   ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDV--NGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++RA    +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R          L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|83854912|ref|ZP_00948442.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83842755|gb|EAP81922.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 223

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A           ++G +++            +S   DV  ++  L       L
Sbjct: 3   LLVVEDDATTGTYIARGLREEGHTVDLVAEGREGLIQATSGAYDVLIVDRMLPE--IDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++   S+   +   ++G DD + KP    E+ ARV A+ RR +
Sbjct: 61  TMVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQ 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +    R     G+   L  RE  +LE+L+  +G+   +T +  A++
Sbjct: 121 AMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +       NVVE+HIS+LR K+      + + + R  GY ID
Sbjct: 181 DIS-FDPMTNVVETHISRLRAKVDKPFDRELIQTVRGAGYRID 222


>gi|329930122|ref|ZP_08283741.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
 gi|328935381|gb|EGG31856.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
          Length = 242

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 96/223 (43%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           F+L++D   +  G       +  S    + +   + + +   +  +     L        
Sbjct: 18  FLLVEDDKTIASGLEYSLQQERYSTIICHDVASAKQVLAEDIDQFALCLFDLQLPDGSGY 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL ++++    +P+I ++        +   D G DD + KP   RE+L+R+ ++ RR + 
Sbjct: 78  ELCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYQK 137

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N+  +   IR+ +        G    L   E R+L     + G+ +++ Q+   I+
Sbjct: 138 PSQVNSIMDIDDIRINTLEGKVFKNGAEIALTALEYRLLLIFGNHIGQVLSRNQLLEQIW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +  + V +N +  +I +LR+KL +  G    + + R LGY +
Sbjct: 198 DVAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYKV 240


>gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G  +              S   D+  ++  L       LE
Sbjct: 5   LLAEDDPAISEPLARALRREGYEVLVREDGPAALGAGLSEDVDLIVLDLGLPE--MDGLE 62

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++       T+   D+G DD V KP    E+LARV A+ RR  V
Sbjct: 63  VCRRLRADGKSFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGNV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    +++  +     +  E   L  +E  +L  L+ + G+ V + +I   ++   
Sbjct: 123 DQLTTGAHGVKIDIESHRAWLGEEELTLSAKEFELLRVLVRDAGRVVTREEIMRQVWDTT 182

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
                   ++ HIS LRKKL  +      + + R +G+  + N
Sbjct: 183 WW-TSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 224


>gi|257484807|ref|ZP_05638848.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331011147|gb|EGH91203.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 229

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +      G+ G  ++          L    R D+  ++  L   G    
Sbjct: 3   ILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLP--GIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++  ++RA   VP++ ++    LQ  +   + G DD + KP    E+L R+  I RR + 
Sbjct: 61  QIIEVLRARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R    Q +V  L  +E  +L  L+   G  +++ QI S ++ +
Sbjct: 121 READHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+        + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRSKVDLPYPVKLIHTVRGIGYVCEV 221


>gi|225022167|ref|ZP_03711359.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680419|ref|ZP_07403227.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
           14266]
 gi|224945100|gb|EEG26309.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659950|gb|EFM49449.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
           14266]
          Length = 234

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +    S      +    + D   ++  +   G    E
Sbjct: 9   LVVDDEPNIVELLTVSLKFQGFEVATATSGLQALEVAPEFKPDAFILDVMMP--GMDGFE 66

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA   + P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 67  LLPKLRALGFEGPVLFLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGAQ 126

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +N      + +  D  +    G V  L   E  +L YLM N    ++K +I  
Sbjct: 127 VAEEVEDDNVLTYDDLVLNDDTHEVTKGGTVVELSPTEFNLLRYLMLNAEVVLSKPKILD 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 187 NVW-HYDFGGDGNVVESYISYLRRKI-DTGDVPLIHTVRGVGYVL 229


>gi|66046603|ref|YP_236444.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257310|gb|AAY38406.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|330970771|gb|EGH70837.1| heavy metal response regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 229

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +      G+ G  ++          L    R D+  ++  L   G    
Sbjct: 3   ILLIEDDTKTGEYLKKGLGESGYVVDWTQHGADGLHLALENRYDLIVLDVMLP--GIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++  ++RA   VP++ ++    LQ  +   + G DD + KP    E+L R+  I RR + 
Sbjct: 61  QIIEVLRARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R    Q +V  L  +E  +L  L+   G  +++ QI S ++ +
Sbjct: 121 READHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+        + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRSKVDLPYPVKLIHTVRGIGYVCEV 221


>gi|331092535|ref|ZP_08341357.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400756|gb|EGG80359.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 232

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +        +G ++ + ++  E  + L+   + D+  I+  +       
Sbjct: 4   ILVCDDDKEIVEAIEIYLRQEGYNVLKAYDGEEALKVLKREEKVDLLVIDVMMPR--LDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +     IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR  
Sbjct: 62  IRATLKIREENSLPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYT 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + +N     G + +  D ++  V GE   L   E  IL  LM N+GK  +  Q
Sbjct: 122 KLGSTVVQNNNTVYTVGGLSIDDDLKEVTVDGEPVKLTPIEYNILLLLMKNQGKVFSIDQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+ +I+   D    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 182 IYESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIE 230


>gi|163938574|ref|YP_001643458.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860771|gb|ABY41830.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRNKLRKVNFPIDHHLKTVYGVGYR 219


>gi|47567077|ref|ZP_00237794.1| two-component response regulator vanRB [Bacillus cereus G9241]
 gi|47556395|gb|EAL14729.1| two-component response regulator vanRB [Bacillus cereus G9241]
          Length = 221

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           +++   +      L      D+  ++  L        
Sbjct: 4   ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPD--IDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR   
Sbjct: 62  SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + I
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIHTLLQNRGKVLSRSDLLNKI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 220


>gi|313884093|ref|ZP_07817859.1| response regulator ArlR [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620540|gb|EFR31963.1| response regulator ArlR [Eremococcus coleocola ACS-139-V-Col8]
          Length = 232

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G   +  +              DV  ++  L       LE
Sbjct: 9   LIIEDEKNLARFVDLELQHEGYETDIRHDGRSGLEAALDEEWDVILLDLMLPE--LNGLE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R IR     P+I ++   S+   +   D G DD + KP    E+LAR+ A++RR+   
Sbjct: 67  VCRRIRPIKDTPIIIMTARDSVIDRVSGLDQGADDYIVKPFAIEELLARLRALFRRIDHE 126

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      E   + V    R  +    V  L +RE  +L +LM N    +++  +  
Sbjct: 127 EELRVTHQPTVEYRDLVVEKANRIVKRGDTVIDLTKREYELLLFLMENINMVMSRDTLLD 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +   VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 187 KVWG-YKSEVETNVVDVYIRYLRNKIDVPGQESYIQTVRGTGYVM 230


>gi|300857169|ref|YP_003782153.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300437284|gb|ADK17051.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 107/222 (48%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V +   A    +G  +  + S    + L+     + S I   L+    +  E
Sbjct: 5   LIVEDEEKVSNIQKAYLEKEGYEV--YTSTTGLKALELFDSIEFSLIILDLMLPDIQGEE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + +IIR  S V +  ++   +L+  ++  ++G D+ + KP   RE++ARV +++RRL  +
Sbjct: 63  ICKIIRDKSDVHIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLGAN 122

Query: 123 NN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           N      + G I+++ D R  +V+G+   L   E  IL  L  N+GK + + Q+   ++G
Sbjct: 123 NISVLSLDNGNIQIYKDSRIIKVKGQEISLTPNEFDILYVLAINKGKVLTREQLIDRVFG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + D    +  V+ HI  +RKK+         + +   LGY  
Sbjct: 183 M-DFEGFDRTVDVHIKNIRKKIEEDSKSPKYILTVTRLGYKF 223


>gi|294679014|ref|YP_003579629.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacter capsulatus SB 1003]
 gi|294477834|gb|ADE87222.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacter capsulatus SB 1003]
          Length = 230

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D +  ++        +G  +    + +         + D+  ++  L       +E
Sbjct: 10  LVVEDESAQREVLQYNLEAEGFRVVMAVNGDEALLFLREEKPDLVVLDWMLPNV--SGIE 67

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++A+ +   +P+I +S        +   ++G DD V KP    E++AR+    RR 
Sbjct: 68  ICRRVKANPETRSIPIIMLSARSEESDRVRGLETGADDYVVKPYSVVELMARLRTQLRRT 127

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +    R     I + +        G+   L   E R+L  LM   G+   + Q+   +
Sbjct: 128 RPATMGERLVFDDIILDAAEHRVFRDGQPLKLGPTEFRLLSTLMEKPGRVWTRDQLLDRV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V+   ++ H+ +LRK L    G DPV + R  GYS+
Sbjct: 188 WGR-DIYVDTRTIDVHVGRLRKALMVNGGADPVRTVRGTGYSL 229


>gi|269796463|ref|YP_003315918.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098648|gb|ACZ23084.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 231

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    ++        +G  +                  D+  ++  L   G    
Sbjct: 4   ILVVEDEESYREPLTYQLTREGYDVVAVADGAAGLAAYDEGGADLVLLDLMLP--GLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    VP+I ++        +   + G DD V KP   RE+LARV A+ RR + 
Sbjct: 62  EVCRELRQRGDVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARVRAVLRRRQP 121

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    E        +GP+++  D     V+GE+  LP +E  +LE+L+ N G+ + + Q+
Sbjct: 122 AAAVDEDEADELVGSGPVQMDVDRHVVTVRGELVSLPLKEFDLLEFLLRNAGRVLTRGQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++G  D   +   ++ H+ +LR K+  +    + + + R LGY +
Sbjct: 182 IDRVWG-SDYVGDTKTLDVHVKRLRAKIETDPASPELLLTVRGLGYKL 228


>gi|257092597|ref|YP_003166238.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045121|gb|ACV34309.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 220

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D +L+ DG  A       +++     E               ++  L  +    L
Sbjct: 3   ILLVEDDSLLGDGIRAGLKLADYAVDWVRDGEAARLALLDHAYQACVLDLGLPKR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + +RA    +P++ ++   S    +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  SVLKDLRARGNHLPVLILTARDSSADKIAGLDAGADDYLTKPFDLPELQARLRALIRRAG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   + +    +     G+   L  RE  +L  L++++     ++Q+  ++Y 
Sbjct: 121 GAATPTLEHAGVVLEPASKRVLRDGQPIALSAREYALLHDLLSHKTHIRTRSQLEESLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E    N VE ++  LRKKL    G D + + R LGY +
Sbjct: 180 AWGEETGSNTVEVYVHHLRKKL----GTDFIRTVRGLGYQL 216


>gi|229018018|ref|ZP_04174894.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
 gi|229026943|ref|ZP_04183264.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228734357|gb|EEL85030.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228743287|gb|EEL93411.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
          Length = 214

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++           ++    + +  E +    ++    I   ++       E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYTV--VVTSDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVS 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           ++IR+ S VP+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   K  
Sbjct: 60  KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNYLVFKEVRIDVDAYRVYVNDIEILLTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  ++++HI  LRKKL        + + + +GY ID
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKID 213


>gi|156740840|ref|YP_001430969.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232168|gb|ABU56951.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 226

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD          L  + G  +    + +    LQS  + +   I   ++       
Sbjct: 3   ILVADDDLPNVKLTAFLLEEAGYKV--IKAYDGPSILQSVEQYNPDLILLDVMMPKTNGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DVCRQIRRTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRNS 120

Query: 122 ----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + R   G I +           G +  L   E R+L YLM N G+ +  +QI + 
Sbjct: 121 DMLNPSARLSHGDITLDPVEHKVLFADGRIVELTPLEFRLLYYLMKNSGRVLNTSQILNK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           ++G +D   E N+V  +I +LR K+         V + R LGY  +
Sbjct: 181 VWG-YDCEGESNLVAVYIRRLRTKIERDPEHPRHVLTVRNLGYKFE 225


>gi|111221078|ref|YP_711872.1| response regulator in two-component regulatory system [Frankia alni
           ACN14a]
 gi|111148610|emb|CAJ60283.1| response regulator in two-component regulatory system [Frankia alni
           ACN14a]
          Length = 244

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD ALV +       + G  ++             +   D+  ++  L   G   LE
Sbjct: 5   LVVDDDALVAEVVDRYLRNAGFDVDRAADGPSALRTAEARPPDLVVLDLMLP--GLDGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-----R 117
           + R + A   VP+I ++        +   + G DD V KP   RE+  RV ++       
Sbjct: 63  VFRRLTARRPVPVIMLTARADEADRITGLEVGADDYVTKPFSPRELTLRVRSVLRRAAEA 122

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + V    R          L  RE  +L +L+   G    + ++   +
Sbjct: 123 AAAPEPGVLRAGALVVDPAARTATRHEVPLGLTVREFDLLAFLLRRPGHAFTRVELLEQV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +G      + + V  HI +LR+K+ +       + +   +GY  D
Sbjct: 183 WGW--SYGDPSTVTVHIRRLREKIEDDPTAPRLLVTVWGVGYRYD 225


>gi|296274651|ref|YP_003657282.1| winged helix family two component transcriptional regulator
           [Arcobacter nitrofigilis DSM 7299]
 gi|296098825|gb|ADG94775.1| two component transcriptional regulator, winged helix family
           [Arcobacter nitrofigilis DSM 7299]
          Length = 222

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 101/221 (45%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       ++  S++  ++ E   +L S    D+  ++  L       +
Sbjct: 3   ILIIEDDVKIVNFLKKGLEEESYSIDYSHNGEEGLYLASVNSYDLILLDIMLPL--LDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA     P+I ++   S++ T+   D G +D + KP    E+LAR+    R   
Sbjct: 61  EVCKKLRAEKINTPIIMLTAKDSIEDTIKGLDIGANDYLPKPFSFSELLARIRVQLRAKD 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + +    +  +  GE   L  +E  +LEYL+ N+ K ++   + +++   
Sbjct: 121 STQTTLKIADLELDLLAKTAKRAGEDITLTAKEFSLLEYLIKNQNKVLS-ETVLASMLNN 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            DE+   N+V  +I +LR K+        + + R LG+ ID
Sbjct: 180 MDESNISNLVNVYIYRLRNKIDKPYEKKLIKTIRGLGFKID 220


>gi|75908637|ref|YP_322933.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
 gi|75702362|gb|ABA22038.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
          Length = 684

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ +  +        +++     + EE    +       I   LI      +
Sbjct: 3   ILLVEDDELIGELLVKSLTSQHYTVDFAK--DGEEGWNFAELYTYDLILLDLILPKLDGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA  +Q P++ ++   +  T +   D+G DD V KP   +E+LAR+ A+ RR  
Sbjct: 61  SFCRQLRASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGG 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     E   +R+     +    G++  L  +E  +LE  + N  +  + + +   ++ 
Sbjct: 121 SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            F+E   E+ V SHI  LR+KL+      DP+D+   +GY +
Sbjct: 180 SFEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRL 221



 Score = 86.5 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 58/141 (41%), Gaps = 5/141 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD   +      L    G+ +  +     + +L++ A  +   +   +       +EL
Sbjct: 399 IVDDDPQILTALQTLLSAWGIKV--YTLAHSQGFLEAMALAEPELLILKMEMPSTSGIEL 456

Query: 64  PRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +I R   Q   +P++ +++     T    F +G DD ++KPI   E++ R+       +
Sbjct: 457 CQIARQEPQWAGLPILFLTNRHDTLTRQQIFIAGADDYISKPIVEPELIGRILNRLEHNR 516

Query: 121 VSNNRAETGPIRVFSDGRDPE 141
              N AE   + + ++ R   
Sbjct: 517 WLQNLAEIDTLTLVANRRKST 537


>gi|317500101|ref|ZP_07958336.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087672|ref|ZP_08336599.1| hypothetical protein HMPREF1025_00182 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898586|gb|EFV20622.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330410364|gb|EGG89797.1| hypothetical protein HMPREF1025_00182 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 230

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G       S      +    R  V  ++  L   G    E
Sbjct: 8   LIVEDDVNINGLLKEALEKEGYICTQAFSGTEARMILQGERYSVILLDLMLP--GIPGEE 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR     P+I ++   ++   ++F   G DD V KP   +E+ ARV    RR + +
Sbjct: 66  VLRDIRKKGNTPVIILTAKDTIDDKVEFLRGGADDYVTKPFDIKEVTARVEVQIRRAETT 125

Query: 123 NNRAE-----TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSA 176
             + E        + +       +V     P + ++E  ILE L+ +  K  +K ++F  
Sbjct: 126 GRKEEEHRFTYQELELNKGDFTVKVGNTELPHITKQEFSILELLLKHPKKVFSKEEMFEY 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 186 AW-EEQYMGETKTLDVHISNIRKKIKAVTDKEYIETVWGIGYRL 228


>gi|167759600|ref|ZP_02431727.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704]
 gi|167662726|gb|EDS06856.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704]
          Length = 233

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + + EE L+   +E +  +   ++      +
Sbjct: 6   ILVCDDDKEIVEAIDIYLSQEGYEV--LKAYDGEEALKVLGKEKIDLLVIDVMMPKLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 64  RATLKIREANNMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQ 123

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             + A        E G + +  D ++  V G    L   E  IL  L+ N+GK  +  QI
Sbjct: 124 LGSTANHKNEAVYEVGGLSINDDLKEVTVDGGPVKLTPIEYNILLLLVKNQGKVFSIDQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +I+   D    +N V  HI  +R+K+  N      +     +GY ++
Sbjct: 184 YESIWNE-DAIGVDNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKVE 231


>gi|331701040|ref|YP_004397999.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128383|gb|AEB72936.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 230

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDG---VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++I+D   +        G+     VS +GF      + L      D+  ++  L     
Sbjct: 6   ILIIEDDEDLAKSLQLFLGEIAQTTVSHDGFEG----QMLGQEGIYDLVVLDLMLPQV-- 59

Query: 59  KVLELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              ++ +  R   H  +P++ ++   +L   +  F+ G DD + KP H  E+L RV A+ 
Sbjct: 60  SGYDILKHWRTEDHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALL 119

Query: 117 RRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +R      +N    GP +V    R  EV G+   L  +E  +L Y + N    + K QIF
Sbjct: 120 KRSGHLGDDNTLSVGPFKVNLSNRIVEVNGKELALNGKEFDLLVYFIQNPDTIITKDQIF 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G F+     +VVE ++S LRKK++      P+ + R +GY  +
Sbjct: 180 DRLWG-FESETAISVVEVYMSNLRKKIKQSSSLQPIKTLRNVGYMFE 225


>gi|310641009|ref|YP_003945767.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309245959|gb|ADO55526.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 104/235 (44%), Gaps = 26/235 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-------EGFNSLEFEEWLQSSAREDVSAIEAFLI 54
            ++++D   +          +G  +       +G  +     W       D+  ++  + 
Sbjct: 5   ILIVEDEEKIARLLEIELEFEGYQVSKEKNGIDGLETYCKGSW-------DLVLLDIMIP 57

Query: 55  GKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
             G   +EL R IR H + VP+I ++   S+   ++  D G +D V KP    E+LARV 
Sbjct: 58  --GINGIELLRRIRKHDANVPVILLTAKSSIADKVEGLDLGANDYVTKPFVIEELLARVR 115

Query: 114 AIYR-------RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           A  R        L+V++     G +R+    R+         L  RE  +L +L+ ++ +
Sbjct: 116 AALRVGATKDMALQVADQWLSAGDLRLHEGTREVLRGEHNIELTPREFDLLVHLLRHQRQ 175

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +++ Q+   ++G+ D   + NVV+ +I  +R K+   +   + + + R +GY +
Sbjct: 176 VLSREQLLENVWGI-DYIGDTNVVDVYIRYVRNKIDPTRQLPELIHTVRGIGYVL 229


>gi|227431176|ref|ZP_03913231.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353071|gb|EEJ43242.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 235

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D  +  F  D   +         E+    A  D+   +  L   GE  L
Sbjct: 9   ILLIEDDVNLADN-VVGFLQDFADINAVTDGLDGEFEAQEAPYDLIISDLMLP--GETGL 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA+  + P++ ++   SL   ++ F+ G DD + KP H  E+L RV A+ RR  
Sbjct: 66  ELIKNLRANDVETPVLILTAKTSLDDKIEGFNVGADDYLTKPFHREELLVRVKALLRRSG 125

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V   +N    G + +  + R  +V G+   L  +E  IL YL  N+   V + QIF  ++
Sbjct: 126 VYSEDNTLAVGDVMINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D     NVV  +++ LR+KL      + + + R +G+ ++ 
Sbjct: 186 GI-DSDTTINVVNIYLNNLRRKLEAVGQNNLIKTLRNIGFILEV 228


>gi|169350089|ref|ZP_02867027.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552]
 gi|169293302|gb|EDS75435.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552]
          Length = 235

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 98/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++D       + G  +  + +   +E L+  ++ ++      ++      +
Sbjct: 5   ILIVEDEMGIRDTVSVFLKNQGYKV--YTATNGQEGLEVVSKHEIHLAIVDIMMPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD V KP    E++ARV    RR + 
Sbjct: 63  TMTMKLRQKYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFEPMELVARVNTNIRRYEQ 122

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       + ++   G + +    ++     +   L  +E +ILE LM+  G+  +
Sbjct: 123 IIKLKNMTTNDNAQHKLVVGGLELDKYTKEVSANNKTVRLTAKEFQILELLMSYPGRVYS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             +I+ A++   +EA+    +  HI KLR+K+  N    + +     +GY I+
Sbjct: 183 AEEIYQAVWK--EEAINTETIMVHIRKLREKIEINPKKPEYLKVVWGIGYKIE 233


>gi|153800662|ref|ZP_01955248.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|153828725|ref|ZP_01981392.1| transcriptional regulator [Vibrio cholerae 623-39]
 gi|254226950|ref|ZP_04920515.1| transcriptional regulator [Vibrio cholerae V51]
 gi|297580356|ref|ZP_06942283.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|124123797|gb|EAY42540.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|125620518|gb|EAZ48887.1| transcriptional regulator [Vibrio cholerae V51]
 gi|148875772|gb|EDL73907.1| transcriptional regulator [Vibrio cholerae 623-39]
 gi|297536002|gb|EFH74836.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 245

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 101/221 (45%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   +  ++    +  Q   + D+  ++  L   G+ V 
Sbjct: 32  LLLVEDDKNLADGLLVSLEQAGY--DCLHAETIADVKQHWDKADLVILDRQLPD-GDSVQ 88

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            L    +    +P+I ++   +++  +   D+G +D + KP    E+ AR+ A  R    
Sbjct: 89  HLMDW-KKLKDIPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRSPDS 147

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +++  T  + +    R+    GE   L R E  +L +L +N G+   + ++   ++G
Sbjct: 148 GQDDSKVVTSNLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDELLDHVWG 207

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 208 -YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 243


>gi|325843788|ref|ZP_08168030.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325489284|gb|EGC91662.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 235

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++        +G+     ++ E    L  +    +  ++  +       + 
Sbjct: 7   LVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVMMP--KMDGIV 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
              +IR  S VP+I ++        +     G DD + KP +  E++ARV +  RR    
Sbjct: 65  TTSLIREFSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQLRRYLML 124

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       +  E   +R+    +   V      L   E +IL  LM N+G+  +  
Sbjct: 125 GAKSSNQQTTDEDTIEINGLRINLSTKQTFVDDIEVRLTPTEFKILSLLMRNKGRVFSIN 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+  ++       E N V  HI K+R+K+  N      +     +GY I+
Sbjct: 185 DIYERVWDEPGYNAE-NTVAVHIRKIREKIEINPKEPRYLKVVWGVGYKIE 234


>gi|303238185|ref|ZP_07324721.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302594231|gb|EFL63943.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +        +G   +  +          S   +V  ++  L  K     E
Sbjct: 5   LIIEDDINIAELERDYLKLNGYKADIVHDGMKGLEKAISGIYEVIIVDLMLPDK--NGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + +R   ++P+I +S        +   D G DD + KP    E+ ARV +   R +  
Sbjct: 63  IIKAVRNRFEIPIIVVSAKSEDIDKIRGLDYGADDYLTKPFSPAELAARVKSHINRYERL 122

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +       + + +      V G    L  +E  +L +L +N      K  IF+ 
Sbjct: 123 KGKNTCSEVINHKGLEINAGSHKVFVNGREIQLTTKEYELLFFLASNPNIVFTKEHIFNT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           I+G  D   +   V  HI K+RKK+    G    +++    GY  +
Sbjct: 183 IWG-DDYYGDTATVPVHIQKIRKKIEKDAGNPQYIETLWGTGYRFN 227


>gi|219670061|ref|YP_002460496.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540321|gb|ACL22060.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 9/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +++        +G  +           +    + ++  ++  L   G   
Sbjct: 3   VILVVDDEEPIQELLKFNLEKEGYQVLMAADGSEALRILEEKQPELVVLDIMLP--GISG 60

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+   IR      ++P+I ++        +   + G DD + KP   RE++AR+ A  R
Sbjct: 61  LEVLNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRELIARIRARLR 120

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RLK S  NN      + +  D     V+GE   L  +E  +L  L    GK   + ++  
Sbjct: 121 RLKPSEENNDILRQDLHIDLDRFRVSVRGEYIELTPKEFELLRVLATYPGKVYTRDELLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I+G ++ A +   V+ H+  LR+K+  +    + +++ R +GY +
Sbjct: 181 RIWG-YEYAGDTRTVDVHVRHLRQKIEKDPSNPEYIETLRGIGYRL 225


>gi|326390090|ref|ZP_08211652.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993955|gb|EGD52385.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 229

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         D     E  +  E   +L    R  V  ++  L        
Sbjct: 4   ILVIEDDVNIAKFVKINL-DKYYETEIVHEGEKTLYLLERERFSVIVLDIMLPD--ISGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IRA     P+I ++        +   + G DD + KP + RE++ARV A+ RR+ 
Sbjct: 61  ELLKKIRAMKVNTPVIILTAKSQDVDKILGLELGADDYITKPFNPRELVARVRAVIRRVY 120

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N      N  E   I++        V+G+   L  RE +IL+ LM NR K V + ++ 
Sbjct: 121 EFNASSKSINLLEYDEIKLDLIQNKAFVRGKEVFLTPREFQILKMLMTNRKKVVKREELI 180

Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           ++I+G  D  + +   ++ HI +LR+K+  N      + ++  +GY    N
Sbjct: 181 ASIWG--DSFIEDTKTLDVHIRRLREKIEVNPDQPKYIHTQWGVGYYFGGN 229


>gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300075141|gb|ADJ64540.1| cobalt/zinc/cadmium resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 90/220 (40%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G +++   +      +      D+  ++  L   G    
Sbjct: 3   ILVIEDDPKTGDYLRKGLRESGYAVDLARNGADGLHMALEQDYDLVVLDVMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++   +R+   +P++ ++    +   +     G DD + KP    E++ R+  + RR + 
Sbjct: 61  QVMSALRSKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E   +++         QG    L  +E  +L  L+  +G+ ++++ I S I+ +
Sbjct: 121 REAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+  I +LR K+        + + R +GY  
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKIDAPFDKKLIHTVRSVGYMF 219


>gi|255523201|ref|ZP_05390172.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186167|ref|ZP_06854572.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255513069|gb|EET89338.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049435|gb|EFG88864.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 231

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      L    G  +    +    E +     +D   +   L+  G    
Sbjct: 7   ILIVEDDNGINTLLARLMEKKGYGV--VQAYSGTEAMLHIEAKDFQLVILDLMLPGITGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL + IR   Q+P+I IS     +  ++  + G DD + KP    E+ ARV +  RR   
Sbjct: 65  ELIKNIRKTKQMPVIVISAKIDKKDKIELLNLGADDYITKPFDIEEVCARVYSNLRRYMK 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N       I +  + ++  V G+      RE  ILE L+ +  K  +K  +F
Sbjct: 125 FSNNNVSVNENLTYKDIVLNKETKEVCVNGKNITFTAREFEILELLLTHPKKVFSKANLF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            +++G  +   ++N V  H+S LR KL+      + +++   +GY I
Sbjct: 185 ESVWGE-EYLGDDNTVNVHMSNLRSKLQKANPKEEYIETIWGMGYKI 230


>gi|160896539|ref|YP_001562121.1| two component heavy metal response transcriptional regulator
           [Delftia acidovorans SPH-1]
 gi|160362123|gb|ABX33736.1| two component heavy metal response transcriptional regulator,
           winged helix family [Delftia acidovorans SPH-1]
          Length = 232

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D       ++G  ++  +       L +    D+  ++  L   G   L 
Sbjct: 7   LVIEDEIKLADYLRKGLTEEGFVVDVAHDGIDGLHLATELAYDLIVLDGMLP--GIDGLA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   +R   Q P++ ++    ++  +     G DD + KP    E++AR+  + RR    
Sbjct: 65  VLAALRQSRQTPVLMLTARGQVEDRVRGLQGGADDYLVKPFAFSELVARMHVLLRRSVGT 124

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +    R     G+   L  +E  +L  L+  +G+ +++T++ S 
Sbjct: 125 AHPAAEATMLRMADLELDLIRRRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +   E NVVE  + +LR KL        + + R +GY ++
Sbjct: 185 VWDM-NFDSETNVVEVAVRRLRLKLDQPFEQPLLHTVRGMGYVLE 228


>gi|302339253|ref|YP_003804459.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636438|gb|ADK81865.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 239

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G + E  +       L      D+  ++  +   G    
Sbjct: 8   ILVVDDEKELAKMICDYLSAMGFTSESASDGPRALRLIGEKEWDLLVLDVMMP--GLDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +RA   +P+I ++        +  F+ G DD V KP   +E+ AR+ A+ RR   
Sbjct: 66  DVARKVRADRGLPIIFLTARAEESDRILGFEIGGDDYVTKPFSMKELAARIRAVLRRSAS 125

Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E       G +R+        +  +   L   +  IL+ L++   +   + ++  
Sbjct: 126 GEKEPEADTEIIRGALRLNPVSMKVRLGNDPVALTPGQFAILKQLVSYPDRVFTRNELLQ 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            + G +   V E  ++ HI  +RK + +       +++   +GY  
Sbjct: 186 EVSGDY-TGVYERTIDVHIKNIRKAIEDDPSHPRYIETIHGIGYRF 230


>gi|228912339|ref|ZP_04076034.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228847322|gb|EEM92281.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 238

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +   +  E           D++ ++  +        
Sbjct: 5   ILIVDDDTDIIELLKLFLEIEGFLVLEASDGEAALKYVKENHIDLAIVDIMMP--KMDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L + +R   + P++ +S        +     G DD + KP    EI+ARV A  RR   
Sbjct: 63  QLIKKVRETLKFPILILSAKTQEIDKIMGLGLGADDFIVKPFSPLEIIARVQAHLRRSYE 122

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L+ + N+   G + +           +   L   E ++L   M + G+   K QI
Sbjct: 123 FNKNTLESTVNQIHIGNLILDHHSCMLYKYNKSITLSAIEYKLLTLFMEDPGRIFTKKQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           F  ++       ++N +  HIS+LR+KL +       + + R LGY  
Sbjct: 183 FERVWSDH-YYSDDNAIMVHISRLREKLEDSPRNPVYIKTIRGLGYRF 229


>gi|212697532|ref|ZP_03305660.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675531|gb|EEB35138.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 233

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D       +DG S+   FN+ +  + L  S   D+  ++  L       
Sbjct: 8   IIIVDDEKEIADLLELYLTNDGFSVSKAFNAKDALD-LVESENFDLMILDIMLED--MDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + IR     P+I ++        +     G DD + KP +  E++ARV    RR +
Sbjct: 65  FSVCKKIREKHYFPIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRRSQ 124

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N   +   + +        +  +   L   E  I+ YL  N+GK V+  +
Sbjct: 125 KYNKTEKIQDNETYDIRGLLIDKKSHKCFLYDKQIQLTPIEFEIIWYLCKNQGKVVSSEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +F  I+         N V +HI ++R K+ +       + +   +GY I+
Sbjct: 185 LFENIWKEK-YLDNNNTVMAHIGRIRDKMNDSGRNPKFIKTVWGVGYEIE 233


>gi|228934444|ref|ZP_04097279.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825081|gb|EEM70878.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 245

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  ++   + +        +   +  ++  L   G    
Sbjct: 30  ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDSTYQLVILDILLP--GMNGH 87

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 88  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 147

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+ N G+ ++   I S ++G +
Sbjct: 148 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 206

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL +    + + + R +GY ++
Sbjct: 207 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLE 242


>gi|228959449|ref|ZP_04121138.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800225|gb|EEM47153.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 225

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +++        +G  +      +  + +       ++ ++  +        
Sbjct: 6   ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIMMPFV--DGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR +  +P+I ++    L      F SG DD + KP    E++ R+ A+ RR ++
Sbjct: 64  TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +        +   G + +  G+   LP +E  +L  L +  G+  ++ ++   ++G+
Sbjct: 124 LSADIITLHRTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   +E  V+ H+ +LR +   +     + + R LGY ++
Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223


>gi|229184109|ref|ZP_04311320.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1]
 gi|228599398|gb|EEK57007.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1]
          Length = 242

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +   ++ E    + ++    ++ ++  +       +
Sbjct: 16  ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPH--MDEI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S   S    +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A   +     +I
Sbjct: 134 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|218289377|ref|ZP_03493611.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240483|gb|EED07664.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 235

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G +++              +   V  ++  +   G    E
Sbjct: 18  LVVDDEPSIVKFLEFGLRREGYAVDTARDGVEAIAKARESMPHVCILDVMMP--GPDGFE 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R++++   V +I ++   ++   +     G DD V KP    E+LAR+ A  R    S
Sbjct: 76  VCRMLKSMGNVAVILLTARDAIDDRVKGLVGGADDYVVKPFSFEELLARIHARVRNQFPS 135

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R E GP  +    ++   +GE   L   E  +L YL+ N G  ++K QI   ++G +
Sbjct: 136 LLKRQEMGPFVIDDARKEISFRGETLKLSSTEYELLRYLLQNHGLVLSKAQILDHVWG-Y 194

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   ++N+VE +IS LR+KL ++     + + R  GY +D
Sbjct: 195 DFNGQDNIVEVYISALREKLGDR-DRTLIRTLRGQGYRVD 233


>gi|206563997|ref|YP_002234760.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198040037|emb|CAR56018.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L++D  L+  G       +G +++     +     L+++    +          G  VL
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRATGYGLLLLDLGLPNRDGLSVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
              R  R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR   
Sbjct: 64  AALR--RRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVSRRHAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      GP+R+        + G+  PL  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 122 RAQTTLAIGPLRLDPVKHLVWLDGDEVPLSPKEFVLLHELMREPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDMIRTVRGVGYRI 216


>gi|157148989|ref|YP_001456308.1| osmolarity response regulator [Citrobacter koseri ATCC BAA-895]
 gi|157086194|gb|ABV15872.1| hypothetical protein CKO_04827 [Citrobacter koseri ATCC BAA-895]
          Length = 290

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 58  ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 115

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 116 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 175

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 176 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 235

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 236 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 283


>gi|124265269|ref|YP_001019273.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124258044|gb|ABM93038.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 223

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG +      G +++   S    +   +    D+  ++  L       L
Sbjct: 3   ILIAEDDQVLADGLLRTLRKGGYAVDQVGSGSEADAALADHEFDLVILDLGLP--KLHGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA   V P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR L
Sbjct: 61  EVLRKMRARGTVTPVLILTAADSVEQRVKGLDLGADDYMAKPFALQELEARVRALTRRGL 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + GP+   + GR   +  ++  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GTASAIIKHGPLSFDATGRVAYLNDQMIELSARELSLLEVLLQRAGRLVSKDQLVERLCE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             DE V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 WGDE-VSNNAIEVYIHRLRKKIEQ--GPVRIATVRGLGYCLE 219


>gi|300854728|ref|YP_003779712.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434843|gb|ADK14610.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 228

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+          D  S++     E   ++      D+  ++  L        
Sbjct: 3   ILVVEDDKLISQSIKNSL-KDYYSIDTALDGEEGLYMAEQNIYDLIILDIMLPSLNGD-- 59

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R +    P++ ++   SL+  ++ F  G DD ++KP H  E+  R+ A+ RR  
Sbjct: 60  EILKSLRKNGVSTPILLLTAKDSLEDKINGFKIGADDYISKPFHIEELKVRIEALLRRSG 119

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N  + G +++    R+  +  E   L  +   ++EYL+ N+G  + K QIF  ++
Sbjct: 120 ALINENILKCGNLKIDIKIRELSINNEKVNLQAKLFDLMEYLINNKGTILTKEQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G F+     N+VE ++ KLRK L        + + R +GY  
Sbjct: 180 G-FESDTAINIVEVYMHKLRKTLVEHGCDGEIKTVRGIGYMF 220


>gi|167578493|ref|ZP_02371367.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 220

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G       +G +++   + +       +    +  ++  L  K    L 
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDK--DGLA 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +   +R     +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G +R+          G+   L  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 122 RAQTVLAVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDTILTVRGVGYRI 216


>gi|153947537|ref|YP_001400292.1| CpxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|152959032|gb|ABS46493.1| transcriptional regulatory protein CpxR [Yersinia
           pseudotuberculosis IP 31758]
          Length = 227

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +        G +G + +  + L  +  +  +   D +A+   ++      +
Sbjct: 3   ILLVDDDLELGTMLKEYLGGEGFTAK--HVLTGKAGIDGALSGDYTALILDIMLPDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR + 
Sbjct: 61  DVLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFEE 120

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N           G + +    R  E QG+ F L   E  +LE L+ +  + V K ++ 
Sbjct: 121 QPNLSATESSIITQGGLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDELS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 DKGLGRPREAYD-RSVDVHISNIRQKLAALPGNHLNIETVRSIGYRI 226


>gi|198276756|ref|ZP_03209287.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135]
 gi|198270281|gb|EDY94551.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135]
          Length = 231

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V D       ++G       + +    L+         + + +I       
Sbjct: 4   ILIIEDDKRVADLLKTGLEENGY--HTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR A+  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELCKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKA 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V+  +     +++ ++ R+   QG +  L  +E  +L Y++ N  + +++ +I 
Sbjct: 122 EATVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIA 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++         N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 182 EKVWNTH-FDTGTNFIDVYINYLRKKIDKDFETKLIHTKPGIGFIL 226


>gi|281181543|dbj|BAI57873.1| two-component regulator protein [Escherichia coli SE15]
          Length = 229

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIHIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|261418666|ref|YP_003252348.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319765481|ref|YP_004130982.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261375123|gb|ACX77866.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317110347|gb|ADU92839.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 223

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   + +  + L    G+  ++     E       +   DV  ++  L       
Sbjct: 3   ILLAEDDLHLGELIVHLLKKKGIDHIDWVQEGEDAYDYAMAEFYDVVVLDWMLPN--GDG 60

Query: 61  LELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +R +     ++ ++   ++Q  +   ++G DD + KP    E++AR+ A+ RR 
Sbjct: 61  LDICRRLRQNGYTGAILMLTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRT 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +   +       +           E   L  RE ++L+ L+ N+G+ V +  I   +
Sbjct: 121 FVPLQEEKVAFHGFTLNRTSHTLHRGDEEIFLTPREFQLLDLLVQNQGQVVPRETILDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D  V    +++ I  LRKKL++    D + + R +GY ID
Sbjct: 181 WG-WDADVSMKTIDATIKLLRKKLKD----DVIQTVRGVGYKID 219


>gi|16264749|ref|NP_437541.1| putative two component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|15140887|emb|CAC49401.1| putative two-component response regulator [Sinorhizobium meliloti
           1021]
          Length = 232

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++    +             DV  ++  L        E
Sbjct: 6   LIVDDDTRLSAMLSDYLSGNGYTVHTAATATAGIAELGHRTPDVVILDVMLPDF--DGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IRA S VP++ ++        +   + G DD + KP + RE+LAR+ AI RR   S
Sbjct: 64  TCRRIRAVSDVPVLMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRRRNGS 123

Query: 123 NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              A T   G + +    R   + G    L   +  +L  L  N G+ +++ Q+  A+ G
Sbjct: 124 AAVARTLRFGRLEIDPGSRSVRIDGRECTLTSYQFDVLVALAENPGRTLSREQLMDAVKG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              +A +   ++ HIS++R  +  +      + + R  GY  
Sbjct: 184 EELDAFD-RSIDVHISRIRAAIESDPKHPRRIITVRGAGYVF 224


>gi|167551081|ref|ZP_02344836.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205324105|gb|EDZ11944.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 240

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    N  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +          G+   L   E R+L+ L     K  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPSKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|188494474|ref|ZP_03001744.1| DNA-binding response regulator CreB [Escherichia coli 53638]
 gi|254037410|ref|ZP_04871487.1| DNA-binding response regulator CreB [Escherichia sp. 1_1_43]
 gi|260858572|ref|YP_003232463.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O26:H11 str. 11368]
 gi|188489673|gb|EDU64776.1| DNA-binding response regulator CreB [Escherichia coli 53638]
 gi|226840516|gb|EEH72518.1| DNA-binding response regulator CreB [Escherichia sp. 1_1_43]
 gi|257757221|dbj|BAI28723.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O26:H11 str. 11368]
 gi|284924577|emb|CBG37716.1| two-component response regulator [Escherichia coli 042]
 gi|309704906|emb|CBJ04259.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|323157712|gb|EFZ43817.1| transcriptional regulatory protein creB [Escherichia coli EPECa14]
 gi|323935191|gb|EGB31554.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323960113|gb|EGB55758.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|332346446|gb|AEE59780.1| transcriptional regulatory protein CreB [Escherichia coli UMNK88]
          Length = 229

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQAPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 SSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   +++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTIDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|329577164|gb|EGG58634.1| transcriptional regulatory protein WalR [Enterococcus faecalis
           TX1467]
          Length = 234

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        DG  +E F   +      ++ +  ++ ++  L        
Sbjct: 5   ILLVDDEQEIADLLEVYLTSDGYEVEKFYRGKPALESMANNQFVLAVLDVMLPD--IDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +  R     P+I ++        +     G DD + KP +  E++AR+    RR + 
Sbjct: 63  QMVKKAREKYFFPIILLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFRK 122

Query: 122 SNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            N++            +   + +       ++ GE   L   E  IL YL   +G+ V  
Sbjct: 123 YNSQASLQQETEGTEIDIHGLVINKIHHTSKLYGEDIFLTPLEFSILWYLAERQGEVVPA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +F  I+G        N V +HI +LR+KL+        + +   +GY ID
Sbjct: 183 EILFEEIWGEKYLENNGNTVMAHIGRLREKLKEPPRKPKFIKTVWGVGYKID 234


>gi|311744416|ref|ZP_07718217.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312221|gb|EFQ82137.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 249

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 91/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   V+D        +G  +              +A  D+  ++  L   G   L+
Sbjct: 13  LVVEDEPAVRDVVRRYLEAEGYRVTVAADGITGLETARTAEPDLIVLDIMLP--GLDGLQ 70

Query: 63  LPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   +R    S VP++ ++        +    SG DD V KP   +E++ RV ++ RR  
Sbjct: 71  ICERLRREDGSAVPIVMLTALGETDDRIAGLTSGADDYVVKPFSVKELVLRVESVLRRSV 130

Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +            G +++    R      +   L  RE  +L + + + G+  ++ ++ +
Sbjct: 131 IEPALPVAEVVREGDLQLNPVSRVAVRGRQPLSLTSREFDLLMFFLRHPGRVFSRDELLN 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            ++G   +  + + V  H+ +LR K+ +       + +    GY  D
Sbjct: 191 RVWGW--DFGDLSTVTVHVKRLRHKIEDIPADPRRIVTVYGRGYRWD 235


>gi|260430186|ref|ZP_05784161.1| DNA-binding response regulator [Citreicella sp. SE45]
 gi|260419109|gb|EEX12364.1| DNA-binding response regulator [Citreicella sp. SE45]
          Length = 217

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A+V D  +   G D   +         E +      D+  ++  L   G+  L
Sbjct: 3   ILLIEDDAIVGDALVKSLGRDRADVVWSRDGLEAEAMLRGGGFDLVVLDLGLP--GQDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R    V P++ ++    ++  +   D G DD + KP    E+LAR  A+ RR +
Sbjct: 61  TLLRGLRGRGDVTPVLVLTARDGVEDRIRGLDHGADDYLLKPFDTGELLARCRALLRRAQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +R E G + V        + G V  LP++E R+L YL   RG+ V K Q+   +YG
Sbjct: 121 GRGEDRIELGQLTVDLQAHTVTLAGRVLTLPQKEFRLLVYLAERRGRVVPKPQLEQMLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE  E N VE ++S LR+K+    G   + + R +GY I
Sbjct: 181 -WDEGAESNTVEVYVSALRRKI----GAASIRTLRGVGYMI 216


>gi|271498801|ref|YP_003331826.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342356|gb|ACZ75121.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 223

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G +++   +     +       D   ++  L   G    
Sbjct: 3   ILVVEDDGSTGDYLKKGLTEAGYAVDLARNGTDGLFNALEHSYDAIILDVMLP--GLNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++  ++R  S VP++ ++    L   +   + G DD + KP    E++ R+  + RR + 
Sbjct: 61  QIIEMLRKKSDVPVLFLTARDQLHDRIHGLELGADDYLIKPFSFTELVLRIRTLLRRGVV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      +R+    R    Q  V PL  +E  +L  L+   G+ +++T I S ++ +
Sbjct: 121 READHYAVADLRLDVLRRKATRQEVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  + +LR K+        + + R +GY  +
Sbjct: 181 -NFDSDTNVVDVAVKRLRAKIDKPFDIKLIHTVRGIGYVCE 220


>gi|228957071|ref|ZP_04118843.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802604|gb|EEM49449.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 225

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGY 218
           +   E+  V+SHI  LR KLR         + +   +GY
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGY 218


>gi|254481325|ref|ZP_05094570.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214038488|gb|EEB79150.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 231

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V     +     G         +           DV  ++  L   G   L+
Sbjct: 8   LLVEDDQSVAKFICSELERVGHRSVHCTEGDLAYDTARDQAFDVWVVDRMLP--GRDGLQ 65

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           L + +R   ++ P + +S    +   +    SG DD + KP    E+LAR+ A+ RR   
Sbjct: 66  LIQDLREIGNETPALVLSALGEVDDRVKGLRSGADDYLVKPFAMDELLARLQALSRRGVN 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R +   + +    ++   +G    L  RE ++LEYLM + G+ V +T +   ++
Sbjct: 126 NQDGTTRLQVQDLVMDLLKQNVSRRGLAVLLQPREYKLLEYLMRHAGQVVTRTMLLEHVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++   + NV++ H+S+LR+K+        + + R  GY +
Sbjct: 186 G-YNFDPQTNVIDVHVSRLRQKIDKDFDTSLLLTVRGAGYRL 226


>gi|46199299|ref|YP_004966.1| two-component response regulator [Thermus thermophilus HB27]
 gi|46196924|gb|AAS81339.1| two-component response regulator [Thermus thermophilus HB27]
          Length = 227

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 90/217 (41%), Gaps = 4/217 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   V     A   + G  ++   +           + D+  ++  L        
Sbjct: 4   ILLIEDDPEVARLVEAELKEAGFQVDWAKTGMEGLIRHREGKPDLVVLDLGLPD--LDGA 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA    P++ ++   ++   +     G DD + KP H  E+LAR+     R K 
Sbjct: 62  EVARRIRATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAELLARIQVQL-RHKE 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + ++   R    +     L  +E  +L  LM+  G+   + +I   ++G  
Sbjct: 121 GSEVLAVGQLELYPRKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWGRP 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
               + NV++ H++ LR KLR    +  + + R +GY
Sbjct: 181 -LGKDSNVLDVHMANLRAKLREAGAYGYLRTVRGVGY 216


>gi|56750113|ref|YP_170814.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|56685072|dbj|BAD78294.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
          Length = 218

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 11/205 (5%)

Query: 23  GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82
           G  +      E       +A  D+  ++  +         + + +R  S VP+I ++   
Sbjct: 3   GYEVVTAADGEEALITFRNATPDLVVLDVMMP--KLDGYGVCQELRKESDVPIIMLTALG 60

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-------VSNNRAETGPIRVFS 135
            +   +   + G DD V KP   +E+ ARV ++ RR++        S+   +   IR+ +
Sbjct: 61  DVADRITGLELGADDYVVKPFSPKELKARVRSVLRRVEKSGANGIPSSGVIQINSIRIDT 120

Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHI 194
           + R      E   L   E  +LE L++  G+  ++ +I   ++G   +  V+  VV+ HI
Sbjct: 121 NKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAEILQEVWGYTPERHVDTRVVDVHI 180

Query: 195 SKLRKKLRNKLG-FDPVDSKRFLGY 218
           S+LR KL +  G  + + + R  GY
Sbjct: 181 SRLRAKLEDDPGNPELILTARGTGY 205


>gi|315924541|ref|ZP_07920760.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622071|gb|EFV02033.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 228

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 95/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +      E        +  D+  ++  L  K     
Sbjct: 5   ILVVDDEKAIVDLIKMELTFEGYQVITAFDGEEAVAKSFESYPDLIVLDIMLPKK--NGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ + I+     P+I ++    +   +   + G DD + KP  +RE+LAR+ A  RR K 
Sbjct: 63  DVCKEIQQKLDTPIILLTAKTDIVDKVLGLELGADDYLTKPFDNRELLARIKAHLRRAKK 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                + + +   GP+ +  D R  ++      L  +E  +L  L ++  +   + ++  
Sbjct: 123 ITNADMQSAKIINGPLCIIPDERIVKLDDHEIHLTPKEFDLLLLLASHLEQVFPRDELLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+G +D   +   V+ HI ++R+K+ +      + +   +GY +
Sbjct: 183 EIWG-YDYYGDTRTVDMHIQRIRRKI-DIHPNKLIQTVFGIGYKM 225


>gi|238028534|ref|YP_002912765.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
 gi|237877728|gb|ACR30061.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 252

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVCSGVDADTALSMQTFDLLILDLGLP--KMPGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA + V P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVLRRLRARNSVLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVIRHGSLSFDQVGRLAYANERVLDLSARELGLLEVLLQRVGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSGA--RIATVRGLGYCLE 219


>gi|163857004|ref|YP_001631302.1| two-component response regulatory protein [Bordetella petrii DSM
           12804]
 gi|163260732|emb|CAP43034.1| two-component response regulatory protein [Bordetella petrii]
          Length = 223

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +         D G +++     +      +    D+  ++  L   G   L+
Sbjct: 4   LVIEDDTTLGHALQEFLADQGYAVDWLTDGDKVLGALAGQSYDLLLLDLNLP--GRSGLD 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           + R +R   +QVP++ ++    L+  +   D+G DD V KP    E+ ARV A   RR  
Sbjct: 62  VLRQLRQDGNQVPVLIVTARDGLEDRVAGLDAGADDYVTKPFDLPELAARVRAFGRRRAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    E G +   + GR+    G+   L  RE  +LE LMA  G+ V K QI +++   
Sbjct: 122 QAQPLIEAGTLTFDTVGREVRANGQRLSLSVRELSVLEMLMARAGRVVTKRQIVNSL-SA 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D    EN VE ++ +LRK+L        + + R  GY +D
Sbjct: 181 WDADFSENAVEVYVYRLRKRLEGTGAS--IQTVRGFGYMLD 219


>gi|268611303|ref|ZP_06145030.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 228

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +   +I     +G   E   +   EE     + +    I   +     +  
Sbjct: 6   ILIVDDDTDLS--FIISEMLEGCGYESLRAASAEEAFDILSHKSFHLILLDINLPDSEGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  S VP+I  S   +    +  FD G DD + KP   +E+L+RV A+ RR   
Sbjct: 64  EICRQLRKVSDVPVIFASARTAEDDRIRSFDIGGDDYLPKPYSMKELLSRVNALIRRAYG 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  + +   G I + +  R     GE   L +RE  +L YL  NR   + K ++ S ++G
Sbjct: 124 QTEDKQLSFGGIVINTATRTVTRNGEKVMLAQREFDLLVYLCRNRNTAIPKEKLLSEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            F E VE + +  HI  LR+KL +       + +   LGY ++ +
Sbjct: 184 AFSE-VEPSTLTVHIRWLREKLEDDPASPKYIKTVWRLGYMLEVD 227


>gi|257093436|ref|YP_003167077.1| DNA-binding response regulator CreB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045960|gb|ACV35148.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 226

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G + +          L  +   D+  ++  L        
Sbjct: 3   ILIVDDEPAISDTLAYALQAEGFASDCCTLGAEALALLDAGGHDLVVLDVGLPD--ISGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R++R +S VP+I ++        +   + G DD V KP   RE+++RV AI RR + 
Sbjct: 61  DVCRLLRRNSDVPVIFLTARSDEVDRIVGLELGADDYVAKPFSPREVVSRVRAILRRSRP 120

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                     +    V  +G      G    L R E  +L  L+A  G+ +++ QI   +
Sbjct: 121 ELRNGAGATASARFTVDGEGLRVAYHGVWLNLTRYEYLLLTLLLARPGRILSRGQIMENV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +    E++E   V++H+  LR KLR  +   +P+ + R LGYSI
Sbjct: 181 WQDSGESLE-RTVDTHVKTLRGKLRAVRADEEPILTHRGLGYSI 223


>gi|170017835|ref|YP_001728754.1| response regulator [Leuconostoc citreum KM20]
 gi|169804692|gb|ACA83310.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A + D  I  F  D   +    +    E+    +  D+   +  L   GE  L
Sbjct: 7   ILLIEDDANLADN-IVGFLQDFADVNVVTNGLDGEYEGQESPYDLIICDLMLP--GENGL 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R +  + P++ ++   SL   ++ F+ G DD + KP +  E+L RV A+ RR  
Sbjct: 64  EVIKHLRDNDIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRAG 123

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V   +N    G + +  + R  +V G+   L  +E  IL YL  N+   V + QIF  ++
Sbjct: 124 VYSEDNMITVGDVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G+ D     NVV  +++ LR+KL      D + + R +G+ ++ +
Sbjct: 184 GI-DSDTTINVVNIYLNNLRRKLEAVGQNDLIKTLRNIGFILEVD 227


>gi|53717560|ref|YP_105537.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|53721677|ref|YP_110662.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|67639687|ref|ZP_00438526.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|76819632|ref|YP_337359.1| response regulator protein [Burkholderia pseudomallei 1710b]
 gi|124383153|ref|YP_001023876.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126447427|ref|YP_001078753.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126458475|ref|YP_001074902.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134278880|ref|ZP_01765593.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167722822|ref|ZP_02406058.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167741803|ref|ZP_02414577.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167818985|ref|ZP_02450665.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167827365|ref|ZP_02458836.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167848846|ref|ZP_02474354.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167897444|ref|ZP_02484846.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167905799|ref|ZP_02493004.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167914106|ref|ZP_02501197.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167922015|ref|ZP_02509106.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217418866|ref|ZP_03450373.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|226194866|ref|ZP_03790457.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237510584|ref|ZP_04523299.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242313496|ref|ZP_04812513.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254179219|ref|ZP_04885871.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254183005|ref|ZP_04889597.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254189661|ref|ZP_04896170.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254192765|ref|ZP_04899200.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254204353|ref|ZP_04910710.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254209237|ref|ZP_04915584.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254264557|ref|ZP_04955422.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254299935|ref|ZP_04967381.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|254356523|ref|ZP_04972798.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52212091|emb|CAH38100.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52423530|gb|AAU47100.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76584105|gb|ABA53579.1| response regulator protein [Burkholderia pseudomallei 1710b]
 gi|124291173|gb|ABN00443.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126232243|gb|ABN95656.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126240281|gb|ABO03393.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134249299|gb|EBA49380.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|147744776|gb|EDK51859.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147750460|gb|EDK57530.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148025550|gb|EDK83673.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157810251|gb|EDO87421.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157937338|gb|EDO93008.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160694546|gb|EDP84556.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|169649519|gb|EDS82212.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184213538|gb|EDU10581.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217398170|gb|EEC38185.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|225932671|gb|EEH28667.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|235002789|gb|EEP52213.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|238520280|gb|EEP83741.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242136735|gb|EES23138.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254215559|gb|EET04944.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 220

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G       +G +++   + +       +    +  ++  L  K    L 
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWAQNADAATLALRTTSYGLLLLDLGLPDK--DGLA 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +   +R     +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G +R+           E   L  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 122 RAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDTILTVRGVGYRI 216


>gi|332655316|ref|ZP_08421056.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332515821|gb|EGJ45431.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 229

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   ++   +      G  ++E     +    L+ +    V+ ++  L   G    
Sbjct: 5   LVLEDEENIRSFVVINLKRAGYQTIEAATGEDALVALKENPGIKVALLDIMLP--GIDGF 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R IRA  +++ +I ++        +    +G DD V KP    E+ ARV A++RR  
Sbjct: 63  EVCRRIRAMDNKIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARVDALFRRTG 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + S +     P  + +  R  E  G+   L + E  I++  M N GK +++ +I  
Sbjct: 123 GEEEETSPDEISQPPFLLNTRNRTLEKNGQRVKLTQVEYGIVKLFMENPGKALSREEILD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           A++G  D   E  +V+ +I +LR K+ +       V++    GY 
Sbjct: 183 AVWGK-DYFGELKIVDVNIRRLRIKIEDNPTKPTYVNTVWGYGYK 226


>gi|258517410|ref|YP_003193632.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257781115|gb|ACV65009.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 384

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  L+ D        +G  +      +    L    R D   ++  L     + L
Sbjct: 166 ILIVDDDRLITDYISMGLIYEGYQVYTAYYGKDALELVKKVRIDAVILDWMLPD--IQGL 223

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R      +I ++        ++   +G DD + KP +  E+LAR+ A  RR   
Sbjct: 224 DLCRRLRELINPVIIMVTGKDEFIDRVNGLRAGADDYMVKPFNFAELLARLEAQLRRQTS 283

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S  +       I ++   R+      +  L   E  +L   M +  + + K  I   I+G
Sbjct: 284 SPEKEVLTYADITIWPTRREARRGQLLLLLTPTEFDLLLLFMRHPRQVLPKEIILQQIWG 343

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +   + N+VE +I  LR+KL+       + + R +GY  +
Sbjct: 344 -HNFTGDLNIVEVYIGYLRRKLQKP---SLIHTVRGVGYLFE 381


>gi|213968576|ref|ZP_03396718.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301385563|ref|ZP_07233981.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060389|ref|ZP_07251930.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302132437|ref|ZP_07258427.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926509|gb|EEB60062.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|331017510|gb|EGH97566.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 220

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G +L+     +    L +   E    +   L        
Sbjct: 3   LLLVEDDRAIGQGIRVALNTEGYTLDWLE--DGLSALHALRSEPFDLLLLDLGLPRMDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +    QG    +   E ++L  LM   GK V + ++ + +YG
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E  I  LRKKL      + + + R +GY ++
Sbjct: 181 WQDK-VESNTLEVLIHNLRKKL----STELIRTVRGVGYLLE 217


>gi|331673604|ref|ZP_08374367.1| transcriptional regulatory protein BaeR [Escherichia coli TA280]
 gi|331068877|gb|EGI40269.1| transcriptional regulatory protein BaeR [Escherichia coli TA280]
          Length = 240

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRSKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|261369014|ref|ZP_05981897.1| phosphate regulon response regulator PhoB [Subdoligranulum
           variabile DSM 15176]
 gi|282568888|gb|EFB74423.1| phosphate regulon response regulator PhoB [Subdoligranulum
           variabile DSM 15176]
          Length = 230

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 13/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D A +++        +G    G             +  D+  ++  L    E  
Sbjct: 1   MIYIVEDDASIRELEQYALQTNGYEATGCEDGASFWAALRESAPDLVILDVMLPD--EDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            ++   +RA      +P+I ++   S    +   D G DD + KP    E ++RV A+ R
Sbjct: 59  YQILNKLRADPATRTIPVIMVTAKTSEIDVVKGLDHGADDYLCKPFGIMEFISRVKAVLR 118

Query: 118 R-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           R        +      G I +    R   V G    L  +E  +L   + +  + +A+ +
Sbjct: 119 RAQAAAPAPAPKTLTFGAIVMDDVARTVRVDGAPVELTFKEYALLHLFLEHPEQVLARER 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++   D+ +E   ++ H+  LR+KL        + + R +GY +
Sbjct: 179 IMKEVWDT-DDLLESRTIDMHVRTLRQKLGAAGES--IRTVRKVGYKL 223


>gi|254417772|ref|ZP_05031496.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196183949|gb|EDX78925.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 223

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A      +    + G  +       F          DV  ++  +       +
Sbjct: 3   ILVVEDDAEAATAMVRGLSEAGHDVTHAVDGAFGLLESQKGGYDVYVVDRMMPR--LDGV 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P++ +S    ++  +    +G DD + KP    E++ARV A+ RR +
Sbjct: 61  GMVETVRKGGDQTPVLFLSALGEVEDRVTGLKAGADDYLVKPYAFAELIARVEALSRRRE 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +    R          L  RE ++LE+LM + G+ V +T +   ++
Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRGATEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +    + NV++ HIS+LR K+        + + R  GY ++
Sbjct: 181 -EYHFDPQTNVIDVHISRLRSKIDKGFDRAMLQTVRGAGYRLE 222


>gi|168205030|ref|ZP_02631035.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168212345|ref|ZP_02637970.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170663408|gb|EDT16091.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170716198|gb|EDT28380.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 226

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPE--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR  S+VP+I ++   ++   +   D+G DD + KP    E+LAR+    ++   
Sbjct: 62  EVLRRIRRVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + +  +   +
Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G ++   E NV++ ++  LR K+ +      + + R +GY I
Sbjct: 182 CG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223


>gi|254974251|ref|ZP_05270723.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091648|ref|ZP_05321126.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313376|ref|ZP_05354959.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255516063|ref|ZP_05383739.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649160|ref|ZP_05396062.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260682337|ref|YP_003213622.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685936|ref|YP_003217069.1| two-component response regulator [Clostridium difficile R20291]
 gi|306519270|ref|ZP_07405617.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260208500|emb|CBA61123.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211952|emb|CBE02450.1| two-component response regulator [Clostridium difficile R20291]
          Length = 229

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++        +   ++   +++    ++         I   L+       
Sbjct: 3   ILLVEDDKNIREMVYDFLISENYFVK--TAVDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR+ S VP+I  +   S    +   + G DD + KP    E+LAR+ A  RR  V
Sbjct: 61  EVLKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATV 120

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            ++         +   + +          G    L   E  I++ L  N+G+  +K Q++
Sbjct: 121 YSSSRNSEDMVIQYKDLIINISKYVVSKNGIDLNLTHTEFEIVKLLATNQGRAFSKEQLY 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
           + I+        ENV+ +HI++LR KL + +   + + +   +GY ++
Sbjct: 181 NTIWKEP-YYGNENVLNTHINRLRNKLSDGIEKNNYIKTLWGIGYKME 227


>gi|22127156|ref|NP_670579.1| DNA-binding response regulator CreB [Yersinia pestis KIM 10]
 gi|45443327|ref|NP_994866.1| DNA-binding response regulator CreB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|150260093|ref|ZP_01916821.1| putative response regulator [Yersinia pestis CA88-4125]
 gi|218928069|ref|YP_002345944.1| DNA-binding response regulator CreB [Yersinia pestis CO92]
 gi|21960218|gb|AAM86830.1|AE013929_3 catabolic regulation response regulator [Yersinia pestis KIM 10]
 gi|45438196|gb|AAS63743.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|115346680|emb|CAL19563.1| putative response regulator [Yersinia pestis CO92]
 gi|149289501|gb|EDM39578.1| putative response regulator [Yersinia pestis CA88-4125]
          Length = 233

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  I     +G +L  F+  E      SS    ++ ++  L       
Sbjct: 5   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPALAIVDVGLPD--ING 62

Query: 61  LELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +L R  + A   +P+I ++        +   + G DD + KP   RE+ ARV  I RRL
Sbjct: 63  FDLCRRMLAAAPDLPVIFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTILRRL 122

Query: 120 K------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +      V++   + G   +   G       ++  L R E  +L+ L+    +  ++ Q+
Sbjct: 123 QKSHLLAVTSTSYQFGHFSLDEAGARVTYHQQILGLTRYEYLLLKTLLLAPERIFSRQQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++   +E+ ++  V++HI  LR KLR     D P+ + R LGYS+
Sbjct: 183 MDIVWAQAEES-QDRTVDTHIKTLRSKLRTVYAEDSPIRTHRGLGYSL 229


>gi|329888261|ref|ZP_08266859.1| response regulator [Brevundimonas diminuta ATCC 11568]
 gi|328846817|gb|EGF96379.1| response regulator [Brevundimonas diminuta ATCC 11568]
          Length = 223

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD A  +          G +++   + + E  L  +     +AI    +  G   LE
Sbjct: 2   LVIDDDARTRAFVAEGLRQQGHTVD--EAGDGEAGLHMAMEGAYAAIVVDRMMPGLPGLE 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
             + +RA   + P++ ++   S+   +   ++G DD + KP    E+ AR+ A+ RR  L
Sbjct: 60  AVQAMRAGGLKTPVLMLTALGSVDDRVAGLNAGADDYLVKPFAFSELSARLQALVRRPPL 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +  R     + V          G    L   E ++LE L  N G  V +T +  +++G
Sbjct: 120 AEATTRHRVADLEVDVAAHRATRAGRTLDLTPHEFKLLERLARNAGHAVTRTMLLESLWG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F      N++++HIS+LR K+      + + + R +GY +
Sbjct: 180 -FHFDPRANLIDAHISRLRAKVDRGFDQELIHTIRGVGYVL 219


>gi|134099376|ref|YP_001105037.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009928|ref|ZP_06567901.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911999|emb|CAM02112.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 220

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 13/225 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEK 59
           + ++++D   V     A+ G  G   E   +    + L++ + + D+  ++  L      
Sbjct: 2   LLLIVEDDDHVASALAAVLGRHGFDTE--RARTGAQALEALSHDPDLVLLDLGLPDT--D 57

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             +L R +R     P++ ++     +  +   + G DD V KP    E++AR+ A+ RR 
Sbjct: 58  GFDLCRRMRQRYDRPILVVTARTDTRARIHGLNLGADDYVVKPYDVGELIARIHAVARRS 117

Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 A      GPI V  D R+  V G    L R+E  +L  L    G   ++ QI S
Sbjct: 118 APRGETATPTRHAGPISVDVDSREATVDGRPVQLTRKEFDLLAMLARQPGVVFSRGQILS 177

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++        +  +E H++ LR KL      D V + R +GY +
Sbjct: 178 EVWSTH-WQGSQRTLEVHVASLRTKL---GLPDAVQTVRGVGYRL 218


>gi|115375995|ref|ZP_01463242.1| putative two component response regulator protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366994|gb|EAU65982.1| putative two component response regulator protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 244

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         + G+ +    +             DV  ++  L   G   LE
Sbjct: 19  LLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLP--GRDGLE 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        +   ++G DD + KP   RE+LAR+ A  RR + +
Sbjct: 77  VCRELRTRSDVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRARGN 136

Query: 123 N----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +++        + G+   L   E  +L  L    G+ +++ Q+   I 
Sbjct: 137 AGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLDLIK 196

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G  DE V +  ++ HI +LR+KL  +      + + R  GY +
Sbjct: 197 GSADE-VFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 238


>gi|54309587|ref|YP_130607.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum SS9]
 gi|46914025|emb|CAG20805.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum SS9]
          Length = 229

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++     +   + G  ++   + E   +   +   D++ ++  L  +    +
Sbjct: 8   ILIVEDDQILSHHLKSQLSELGHQVQCAGTAEEGLFFAQNYPNDIAVVDIGLPDR--DGI 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R    ++P++ ++   + Q  +   ++G DD + KP    E++AR++A+ RR  
Sbjct: 66  SLIKDMRKKGLRLPVLILTARANWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G IRV    +   V   +  L   E  +LEYLM +  + V+K ++   +Y 
Sbjct: 126 GFVKPEMSAGDIRVDLLAKQVFVGETLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLY- 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  IS+LRKK  +    +P+ + R  GY  +
Sbjct: 185 -EDQEGDPNTIEVMISRLRKKFMSAGQDNPISTIRGQGYIFE 225


>gi|229077964|ref|ZP_04210573.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228705302|gb|EEL57679.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 225

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|212697066|ref|ZP_03305194.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675841|gb|EEB35448.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 240

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +     +    +   +  F + + +E L+    ED+  +   L+       
Sbjct: 9   ILLIEDEKGISKIMKSYLEKEDYKV--FQAFDGKEGLEIFESEDIDLVLLDLMIPKISGE 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S VP+I ++   S    ++    G DD V KP   +E++ R+  + RR++ 
Sbjct: 67  DLIKEIRNKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIEK 126

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N       +   G + +  +       GE   L + E +I++ L +N  K   + +I  
Sbjct: 127 YNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEIIE 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
             +G FD    +  +++HI  +R+K+ +       + +   +GY 
Sbjct: 187 ITFG-FDYDAYDRAIDTHIKNIRQKIEDNPKKPSYIKTIYGMGYK 230


>gi|126172546|ref|YP_001048695.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|152998839|ref|YP_001364520.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|217971506|ref|YP_002356257.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304411761|ref|ZP_07393373.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307306187|ref|ZP_07585932.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125995751|gb|ABN59826.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151363457|gb|ABS06457.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|217496641|gb|ACK44834.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349949|gb|EFM14355.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911060|gb|EFN41487.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
          Length = 225

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +  F + G ++E  +       L +S++ D+  ++  L       L
Sbjct: 3   ILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQ--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA     P++ +S    +   +    +G DD + KP    E+L R   +  R +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQ 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +   G +++    R+  + G+   L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SVPVTTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|51597482|ref|YP_071673.1| DNA-binding response regulator CreB [Yersinia pseudotuberculosis IP
           32953]
 gi|108806370|ref|YP_650286.1| DNA-binding response regulator CreB [Yersinia pestis Antiqua]
 gi|108813255|ref|YP_649022.1| DNA-binding response regulator CreB [Yersinia pestis Nepal516]
 gi|145597926|ref|YP_001162002.1| DNA-binding response regulator CreB [Yersinia pestis Pestoides F]
 gi|165924975|ref|ZP_02220807.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937334|ref|ZP_02225898.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010264|ref|ZP_02231162.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212654|ref|ZP_02238689.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399825|ref|ZP_02305343.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419175|ref|ZP_02310928.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425262|ref|ZP_02317015.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467689|ref|ZP_02332393.1| DNA-binding response regulator CreB [Yersinia pestis FV-1]
 gi|170023127|ref|YP_001719632.1| DNA-binding response regulator CreB [Yersinia pseudotuberculosis
           YPIII]
 gi|186896602|ref|YP_001873714.1| DNA-binding response regulator CreB [Yersinia pseudotuberculosis
           PB1/+]
 gi|229837582|ref|ZP_04457744.1| putative response regulator [Yersinia pestis Pestoides A]
 gi|229840805|ref|ZP_04460964.1| putative response regulator [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842636|ref|ZP_04462791.1| putative response regulator [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229903711|ref|ZP_04518824.1| putative response regulator [Yersinia pestis Nepal516]
 gi|270487490|ref|ZP_06204564.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294502937|ref|YP_003566999.1| response regulator [Yersinia pestis Z176003]
 gi|51590764|emb|CAH22409.1| Putative response regulator CreB family [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776903|gb|ABG19422.1| response regulator [Yersinia pestis Nepal516]
 gi|108778283|gb|ABG12341.1| putative response regulator [Yersinia pestis Antiqua]
 gi|145209622|gb|ABP39029.1| response regulator [Yersinia pestis Pestoides F]
 gi|165914808|gb|EDR33421.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923175|gb|EDR40326.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990750|gb|EDR43051.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205946|gb|EDR50426.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963169|gb|EDR59190.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050533|gb|EDR61941.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055662|gb|EDR65446.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749661|gb|ACA67179.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186699628|gb|ACC90257.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229679481|gb|EEO75584.1| putative response regulator [Yersinia pestis Nepal516]
 gi|229690946|gb|EEO83000.1| putative response regulator [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229697171|gb|EEO87218.1| putative response regulator [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229704270|gb|EEO91281.1| putative response regulator [Yersinia pestis Pestoides A]
 gi|262360972|gb|ACY57693.1| response regulator [Yersinia pestis D106004]
 gi|262364912|gb|ACY61469.1| response regulator [Yersinia pestis D182038]
 gi|270335994|gb|EFA46771.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294353396|gb|ADE63737.1| response regulator [Yersinia pestis Z176003]
 gi|320014028|gb|ADV97599.1| putative response regulator [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 232

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  I     +G +L  F+  E      SS    ++ ++  L       
Sbjct: 4   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPALAIVDVGLPD--ING 61

Query: 61  LELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +L R  + A   +P+I ++        +   + G DD + KP   RE+ ARV  I RRL
Sbjct: 62  FDLCRRMLAAAPDLPVIFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTILRRL 121

Query: 120 K------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +      V++   + G   +   G       ++  L R E  +L+ L+    +  ++ Q+
Sbjct: 122 QKSHLLAVTSTSYQFGHFSLDEAGARVTYHQQILGLTRYEYLLLKTLLLAPERIFSRQQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++   +E+ ++  V++HI  LR KLR     D P+ + R LGYS+
Sbjct: 182 MDIVWAQAEES-QDRTVDTHIKTLRSKLRTVYAEDSPIRTHRGLGYSL 228


>gi|304405824|ref|ZP_07387482.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345067|gb|EFM10903.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 231

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 100/224 (44%), Gaps = 12/224 (5%)

Query: 5   IDDR-ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++D   ++++G  A+   +G +++GF+S E  + L      D+  ++  L       L+ 
Sbjct: 8   VEDEVKILEEG-KAILQKEGFAVQGFHSFEEAKELLMEGVADIVILDWMLPDV--SGLDA 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--- 120
            + +     +P+I ++        +   + G DD + KP   RE++AR+  + RR +   
Sbjct: 65  CKWVVNTIGIPVIMVTARTDEFDKVLALEIGADDYIPKPFGMRELIARIRTVLRRSRKAP 124

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S+       + + +D  +  ++GE   L   E  +L  + +  G+   ++Q+  + 
Sbjct: 125 VETSSSQVLSFNELTIDTDKHEVRLRGERVSLTATEYNLLLAMASYPGRVFTRSQLIESS 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G       E  ++SHI  LRKK+  +   F+ + +   +GY  
Sbjct: 185 MGES-YFGYERTLDSHIRNLRKKIEADPNNFEYILTVYAVGYKF 227


>gi|167844478|ref|ZP_02469986.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei B7210]
          Length = 240

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 6   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPR--MSGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 184 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 222


>gi|118586833|ref|ZP_01544268.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290889967|ref|ZP_06553053.1| hypothetical protein AWRIB429_0443 [Oenococcus oeni AWRIB429]
 gi|118432753|gb|EAV39484.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290480409|gb|EFD89047.1| hypothetical protein AWRIB429_0443 [Oenococcus oeni AWRIB429]
          Length = 228

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 7/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE--WLQSSAREDVSAIEAFLIGKGE 58
           + ++I+D   +          +   +   +  E     + Q+S R +V  ++  L  +  
Sbjct: 5   IILIIEDETAIVAYLQTELKFEDYIVLTASDGEMGLSVFEQNSNRINVVLLDWMLPKR-- 62

Query: 59  KVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LE+ R IR  +SQV +I ++    +   +   DSG DD + KP    E+LAR+    R
Sbjct: 63  DGLEVLRRIRKLNSQVSIILMTAKSDIGDKVAALDSGADDYITKPFEIEELLARLRVTIR 122

Query: 118 RLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  +   + +  D       G+V  L +RE ++L YL+ N GK + +  +   
Sbjct: 123 HQNKPRPKLYQVSNLVLDLDAHRVTRDGQVIDLTQREFQLLTYLIENAGKTLTRDDLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G+ D   + N  + +I  LR+K+ +      + + R +GY +
Sbjct: 183 VWGV-DFNGQYNTADVYIRYLRQKIDDHFYPKLIHTVRSVGYVL 225


>gi|49187888|ref|YP_031141.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49181815|gb|AAT57191.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
          Length = 221

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           +++   +      L      D+  ++  L        
Sbjct: 4   ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPD--IDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR   
Sbjct: 62  SICKIMRGQSDVPIIMLTGSHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 220


>gi|23097812|ref|NP_691278.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776036|dbj|BAC12313.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 256

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 101/227 (44%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       +G  +   + ++  +   ++  +D+S     L        
Sbjct: 22  ILIVEDDKTIATGLEYSLKQEGYDVVVCHKVQEAQRKINNDLDDISLCLFDLSLPDGSGY 81

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL  +++  + +P+I ++        +   D G DD + KP   RE+++R+  + RR + 
Sbjct: 82  ELCEMVKRKADIPVIFLTVVDDEVNVVMGLDMGADDYITKPFRIRELISRIKTVLRRYEK 141

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S       ++    G I + +       + E   L   E R+L   + +RG+ +++ Q+ 
Sbjct: 142 SKPNKEQLSSVISIGSINIHTLEGKVYKETEEILLTALEYRLLMIFVNHRGQVLSRKQLL 201

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             I+ +  + V +N +  +I +LRKK+  +      +++ R +GY +
Sbjct: 202 QLIWDIAGDFVNDNTLTVYIKRLRKKIEEDAQHPTVIETVRGMGYRM 248


>gi|320160341|ref|YP_004173565.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994194|dbj|BAJ62965.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 234

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD AL++          G  +  F +   E+ L  + R     +   +   G   L
Sbjct: 5   ILLIDDDALMRRSLGFNLEQAGFQV--FTAASAEDGLVLAKRTPPDLVLLDINLPGMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R  R     P+I ++        +   + G DD + KP     +LAR+ A+ RR+  
Sbjct: 63  DALRRFREEVGAPVIFVTARRRELDQVLGLELGADDYITKPFDFNILLARIKAVLRRVSG 122

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              R          G +R+          G+   L  RE  +L  L    GK V   ++ 
Sbjct: 123 GEERKPAEPQPLLIGELRIDPLAHTVHRAGKPVDLSPREFDLLYTLALEAGKVVPADELL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + ++G  +   E  V+  HI  LR+KL +       + + R +GY +
Sbjct: 183 ARVWGA-EFVGEPQVLYVHIRWLREKLEDDPQNPHYILTVRGVGYKL 228


>gi|332975039|gb|EGK11946.1| two component response regulator [Psychrobacter sp. 1501(2011)]
          Length = 227

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D + + +G I    + G+ ++ F+  +  E     +  D   ++  L       + 
Sbjct: 5   LLIEDDSTIAEGLILGLKNHGIMVDWFSDAKLGELALQESMFDAVLLDLTLPN--GDGMS 62

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + +  R      P++ I+   ++   +   ++G DD + KP    E++AR+ A+ RR + 
Sbjct: 63  VLKSWRDKKIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVIARLQALMRRSQG 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G +  +   +    QG+   L  +E  ILE +M    K   +  +   +YG 
Sbjct: 123 RIYPEIRFGELVYYPHSQQVTYQGQSIDLTTKEVAILEQMMTQPQKIHNRASLEDKLYG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + +E N +E HI  LRKKL    G D + +KR +GY ++
Sbjct: 182 WQQDIESNAIEVHIHHLRKKL----GNDFILTKRGIGYYLN 218


>gi|307312356|ref|ZP_07591990.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|306907527|gb|EFN38030.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|315061354|gb|ADT75681.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli W]
 gi|320198770|gb|EFW73370.1| Response regulator BaeR [Escherichia coli EC4100B]
 gi|323183860|gb|EFZ69251.1| transcriptional regulatory protein baeR [Escherichia coli 1357]
 gi|323378066|gb|ADX50334.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
          Length = 240

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GIDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 226

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D    L   +G  +    +          A  D+  ++  L   G    
Sbjct: 4   ILVVEDEESFSDPLSYLLRREGYDVAVTETGPEALEEFDKAGADLVLLDLMLP--GLPGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++   S    +   + G DD V KP   RE+LARV A+ RR   
Sbjct: 62  EVCRQLRTRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVLRRGAE 121

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E G +R+  D     V+GE  PLP +E  +LE L+ N G+ + + Q+   +
Sbjct: 122 PEDLVQTTVEAGGVRMDVDRHVVTVRGERVPLPLKEFELLELLLRNAGRVLTRVQLIDRV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRAKIEPDPANPRHLVTVRGLGYKFE 225


>gi|331086452|ref|ZP_08335532.1| hypothetical protein HMPREF0987_01835 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406218|gb|EGG85741.1| hypothetical protein HMPREF0987_01835 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 227

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAR-EDVSAIEAFLIG-KGE 58
            ++++D   + +         G S E  F+  E +  L        +  ++  L G  GE
Sbjct: 4   ILIVEDDTNINNLLQEALSKAGYSCEQAFSGTEAKLLLNMQEHSYALVLLDLMLPGITGE 63

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            VLE    IR    + +I ++   SL   +    SG DD + KP   RE+LAR+    R 
Sbjct: 64  AVLE---EIRKKGNLQVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQLRH 120

Query: 119 L---KVSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIF 174
               ++  +      + +        + G++ P + R+E  ILE L+ N  +  +K  IF
Sbjct: 121 TEEKEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKEDIF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 181 EYAWDEP-YMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 225


>gi|329120052|ref|ZP_08248722.1| two component response regulator [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327463583|gb|EGF09901.1| two component response regulator [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 220

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 108/221 (48%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + DG  A     G++ + F+         ++A  D + ++  L       +
Sbjct: 3   ILLIEDDPHIGDGIAAGLKKLGMAADWFSDGLEGLAAATAAPYDAAVLDLGLPN--IDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +  R     +P++ ++   +L   L   + G DD + KP    E+ AR+  + RR +
Sbjct: 61  DILQRWRESGVNLPVLILTARDALPDRLAGLNGGADDYLCKPFALEELAARLNVLVRRHR 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++  + G + + +  +   + GE   L  RE R+LE L++N    V++ QI   +YG
Sbjct: 121 GRADSGLKFGRLTLDTAAQTASLGGEPLDLTAREWRLLEMLVSNPKHIVSRAQIEDKLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V+ N VE HI  LRKK+    G   + +KR LGY +
Sbjct: 181 -WDQEVDSNAVEVHIHHLRKKI----GASVIKTKRGLGYQL 216


>gi|313498604|gb|ADR59970.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 279

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D + + +   +    +   ++     +         R D+  ++  L   G   L
Sbjct: 50  IFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLP--GIDGL 107

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R++R  SQ  P++ ++        +   + G DD V KP   R +LARV  + RR  
Sbjct: 108 QLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 167

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V+  R +      G +R+    R    +GE   L   E  +L  L  N G+ + + +I  
Sbjct: 168 VNEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQ 227

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY---SIDW 222
            + G+ +    +  V+  ISKLR+K  +  G    + +    GY    ++W
Sbjct: 228 QLRGI-EFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEW 277


>gi|239817851|ref|YP_002946761.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239804428|gb|ACS21495.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 249

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 90/227 (39%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +       F   G +LE             +   D + ++  L        
Sbjct: 21  ILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAKLRAGPFDAAILDVMLPE--MDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++    +   +   + G DD V KP   RE++ARV  I RR + 
Sbjct: 79  ALCREIRKESDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILRRQRS 138

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +   A            + +  D R     GE   L   E  +L  L A  GK  ++  I
Sbjct: 139 TPAAANGNGTQHRVFDGLSIDLDRRQVLRHGERVELTGTEFELLALLAAEPGKVFSRDDI 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + G  +  +    V+  +S+LRKKL      D + + R  GY++
Sbjct: 199 LNRLRG-HEAELYTRAVDIVVSRLRKKLEP---LDCIKTLRNAGYAL 241


>gi|153003289|ref|YP_001377614.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026862|gb|ABS24630.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 231

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 12/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +           G       + E           D+  ++  L        E
Sbjct: 5   LLVDDERDLLSLLDFNLRAAGFETLLATTGEQALVQLRRRIPDLVVLDLMLPDV--SGTE 62

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R I+A ++   VP++ ++        +  F+ G DD V KP   RE++ R+ A+ RR 
Sbjct: 63  VCRQIKADARTRHVPVVMLTAKGEEVDRVVGFEVGADDYVTKPFSVRELVLRLKALARRT 122

Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      + GPIRV  D     V GE   L   E R+L  LMA  G+  ++ Q+  
Sbjct: 123 GAGRPAERPPEQVGPIRVDVDAHRAFVDGEEVQLTPLEFRLLTMLMARLGRVQSREQLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ +  E VE   V++H+ +LR+KL +  G D +++ R +GY +
Sbjct: 183 DVWEMSSE-VETRTVDTHVKRLREKLGS--GRDLLETVRGIGYRL 224


>gi|42781127|ref|NP_978374.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737048|gb|AAS40982.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 229

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 4   ILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GIDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 62  QVCKAIREENKKIGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 121

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V + +A+   +GP  +          G++  L   E  IL YLM    K V++ +I + I
Sbjct: 122 VHDEKADMITSGPFSLNVIEERLYKNGQLVDLTPTEYMILHYLMNQAAKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+KL  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKLECNPSEPEXILTVWGKGYV 223


>gi|254994186|ref|ZP_05276376.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
          Length = 220

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 96/225 (42%), Gaps = 15/225 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGK 56
            +++DD       +I       +  EGF  LE  + +++     + +  ++ I+  +   
Sbjct: 4   ILVVDDDR-----HILKLVGHYLRAEGFRVLEASDGVEARKNVETEQVHLAVIDVMMPN- 57

Query: 57  GEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
                EL + +R ++  +P+I ++   +L      F+ G DD V KP    E++ R+ A+
Sbjct: 58  -MDGFELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRAL 116

Query: 116 YRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            RR   ++  +   G I +       ++  +   +P +E  +L  L +  G+   + ++ 
Sbjct: 117 LRRSNQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELI 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             I+   D    +  V+ HI +LR     +     + + R +GY 
Sbjct: 177 ERIW-QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYK 220


>gi|242241118|ref|YP_002989299.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dickeya dadantii Ech703]
 gi|242133175|gb|ACS87477.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dickeya dadantii Ech703]
          Length = 223

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G +++   S     +       D   ++  L   G    
Sbjct: 3   ILVVEDDVSTGDYLKKGLTEAGYAVDLARSGTEGLFNALEHGYDAIILDVMLP--GLSGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +L  ++R  S VP++ ++    L   +   + G DD + KP    E++ R+  + RR + 
Sbjct: 61  QLIEMLRKKSDVPVLFLTARDQLHDRIRGLELGADDYLIKPFSFTELVLRIRTLLRRGVV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      +R+    R    Q  V PL  +E  +L  L+   G+ +++T I S ++ +
Sbjct: 121 READHYAVADLRLDVLRRKATRQEVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  + +LR K+        + + R +GY  +
Sbjct: 181 -NFDSDTNVVDVAVKRLRAKIDKPFDIKLIHTVRGIGYVCE 220


>gi|94268091|ref|ZP_01291082.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451731|gb|EAT02499.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 298

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   +     A     G +LE   SL            D+  ++  L       L
Sbjct: 75  LLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPD--GDGL 132

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E    +++ H Q+P+I ++    +   +   + G DD V KP    E+LAR+ A  R   
Sbjct: 133 EFCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANP 192

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    + G + +    +  +V G+   L  +E ++L  LM NR   V + +I   +
Sbjct: 193 GAGTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLMENRNHLVTREEIRKRL 252

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +          V++ HI  LR+K+         + +    GY  
Sbjct: 253 WRDSKIYSWSRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGYRF 296


>gi|70732535|ref|YP_262298.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346834|gb|AAY94440.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 224

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G  ++  N+      L      D+  ++  L        
Sbjct: 3   ILVIEDEPKTADYLHQGLTESGYVVDCANNGADGLHLTRQHAYDLVILDINLPH--IDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S   ++ ++    L   +   D G DD + KP    E+LARV  + RR + 
Sbjct: 61  GVLGQIRQDSSTRVMMLTAQGRLADKIRGLDLGADDYLVKPFQFPELLARVRTLMRRSEQ 120

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +      + +           +   L  +E  +L  LM   G  +++TQI S ++ 
Sbjct: 121 APVPDVLRVADLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRQSGVVLSRTQIISFVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFERKLIHTLRGVGYVLE 221


>gi|325276878|ref|ZP_08142571.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097983|gb|EGB96136.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 222

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  IA     G +++         +   S   D+  ++  L   G   L
Sbjct: 3   LLLVEDNVPLADELIAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLP--GMPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+    RA +   P++ ++   S    ++   +G DD ++KP H  E+  R+ A+ RR +
Sbjct: 61  EVLAQWRAAALATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  R E   + +    +     G    L   E R+L Y M +  + ++K+ +   +Y
Sbjct: 121 GLANQPRLEAAGLHLDEGRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +   + NV+E H++ LR+KL    G   ++++R  GY
Sbjct: 181 DG-ETERDSNVLEVHVNHLRRKL----GRSVIETRRGQGY 215


>gi|229014759|ref|ZP_04171862.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228746525|gb|EEL96425.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 97/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+    + DV  ++  L       
Sbjct: 5   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEQPDVLILDVMLPDT--DG 60

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 61  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRV 120

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +      ++     G + +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 121 RKEEVSSTHEVIRAGELVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL N      + +   +GY +D 
Sbjct: 181 EKVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEH--IKTIYGVGYKLDC 225


>gi|116050809|ref|YP_790370.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296388712|ref|ZP_06878187.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|115586030|gb|ABJ12045.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 226

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +     E L      D+  ++  L   G    
Sbjct: 3   LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLP--GRDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R +R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   + +    R  + QG+   L  +E  +LE L+   G+ + K+ I S ++
Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLE 222


>gi|219666111|ref|YP_002456546.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219536371|gb|ACL18110.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L   +G ++         +   ++    V      ++  G+   
Sbjct: 7   ILVVDDDPEIREIIHILLQREGFAV---QVAADADTALATLTPGVDLAILDIMMPGKSGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL   IR  + +P++ ++         + F  G DD + KP    E+++RV A+ RR   
Sbjct: 64  ELCSEIRKTTTIPILFLTAKNQDADKAEGFSCGGDDYLVKPFSSIELISRVKALLRRYLI 123

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S      G + +  D       GE   L   E ++   L+ NR K  +  +I+
Sbjct: 124 YQKQEPASKKEVRLGDLYIDLDTGTVARSGEKIALTSMEYQVFRLLLLNRRKVFSAKEIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I+      +  N +  HI  LR+KL   +G    + +    GY I+
Sbjct: 184 EHIWQEPFLPLSNNTIMVHIKNLRRKLEKDVGRPQYIRTVWGKGYYIE 231


>gi|116618899|ref|YP_819270.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097746|gb|ABJ62897.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 233

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D  +  F  D   +         E+    A  D+   +  L   GE  L
Sbjct: 7   ILLIEDDVNLADN-VVGFLQDFADINAVTDGLDGEFEAQEAPYDLIISDLMLP--GETGL 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA+  + P++ ++   SL   ++ F+ G DD + KP H  E+L RV A+ RR  
Sbjct: 64  ELIKNLRANDVETPVLILTAKTSLDDKIEGFNVGADDYLTKPFHREELLVRVKALLRRSG 123

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V   +N    G + +  + R  +V G+   L  +E  IL YL  N+   V + QIF  ++
Sbjct: 124 VYSEDNTLAVGDVMINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D     NVV  +++ LR+KL      + + + R +G+ ++ 
Sbjct: 184 GI-DSDTTINVVNIYLNNLRRKLEAVGQNNLIKTLRNIGFILEV 226


>gi|84496068|ref|ZP_00994922.1| putative two component response regulator [Janibacter sp. HTCC2649]
 gi|84382836|gb|EAP98717.1| putative two component response regulator [Janibacter sp. HTCC2649]
          Length = 247

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +   +              DV  ++  L   G+  +E
Sbjct: 22  LVVEDDLPMATLIGNYLEHEGYEVRLSHDGVAAVQAARGFDPDVVVLDLGLP--GQDGIE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++       TL     G DD + KP   RE++AR+ A+ RR +  
Sbjct: 80  VCRQLRTFSDAYVVMLTARADELDTLIGLSVGADDYMTKPFSPRELVARLRAMQRRPRPI 139

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G + +   GRD  +  +   L R E  +L  L    G   ++ Q+   
Sbjct: 140 DGANHGPTLRRFGTLAIDPIGRDVWLDDQPVSLTRTEFDVLAVLSERPGMAFSRRQLIDQ 199

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           ++G      ++++V+ HI  LR+KL +  G    + + R +GY +
Sbjct: 200 VWGGT-WVGDDHLVDVHIGHLRRKLGDDAGAARFIRTVRGIGYRM 243


>gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 232

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +E        E L  +      A+   ++  G     
Sbjct: 10  LIVDDEPSLVELLSVSLRFQGFEVE--TGTNGAEGLDKARAFRPDALILDVMMPGMDGFG 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 68  MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGH 127

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S++    R     + +  D R+    GE   L   E  +L Y M N G  ++K +I + +
Sbjct: 128 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILAHV 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 188 WN-YDFGGEVGVVESYVSYLRRKI-DTTEPRLIHTLRGVGYVM 228


>gi|241896109|ref|ZP_04783405.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870623|gb|EER74374.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 229

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G      ++         +   D+  ++  L       LE
Sbjct: 5   LVIEDEENLARFVELELQHEGYETHVEDNGRSGLDAALANDFDLILLDLMLPE--LSGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R +R     P+I ++   S+   +   D G DD V KP    E+LARV A+ RR    
Sbjct: 63  VARRLREEKNTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRRIDIE 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      + V  + R      E+  L +RE  +L  LM N     ++ ++  
Sbjct: 123 TEEHSTHQSVVRYRDLTVEKENRIARRGNEIINLTKREYELLLILMENINVVQSREELLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++G +D  +E NVV+ +I  LR K+         + + R  GY +
Sbjct: 183 KVWG-YDSEIETNVVDVYIRYLRNKIDQPDSRASYIQTVRGTGYVM 227


>gi|332140234|ref|YP_004425972.1| response regulator [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550256|gb|AEA96974.1| response regulator [Alteromonas macleodii str. 'Deep ecotype']
          Length = 221

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D       +   +++   +        S  + D+  ++  L       L
Sbjct: 3   ILLVEDDRPLSDALALSLKNANYAVDCVYTGADAMTTLSIGQTDIVVLDLGLPDT--DGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ ++    +   +   D+G DD + KP    E+LAR+  + RRL 
Sbjct: 61  NVLKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S        + + +      +  E   LPRRE  +L+ L+ N G+ ++K Q+ + +Y 
Sbjct: 121 TASQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E V  N +E H+S LRKK+ +    + + + R +GY I
Sbjct: 180 EWGEEVASNTIEVHVSHLRKKMPD----NFIKTIRGVGYCI 216


>gi|331091527|ref|ZP_08340364.1| hypothetical protein HMPREF9477_01007 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403692|gb|EGG83246.1| hypothetical protein HMPREF9477_01007 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 225

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +G   L   +G   E   S+          +  +  ++  L        
Sbjct: 4   ILIIEDDRHIGEGLQFLLESEGYCAELAMSVSEGREKLEKGKTQLLILDVNLPD--GSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + I    ++P+I ++     +  +  F+ G D+ + KP   RE+++RV  + R   +
Sbjct: 62  EFFQKI-QSKKIPVIFLTALDEEKNIVKGFNLGADEYITKPFRPRELVSRVKNVIRLTGI 120

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++R +    G + +  + +     G+   L   E ++L     NRG+ + + QI S I+
Sbjct: 121 EDSRKQELIIGNVSIHLEEKVAYKNGKQLELTALEYKVLLLFFENRGRILTRNQILSHIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                 V +N +  +I +LR+K+ +     D + + R +GY I
Sbjct: 181 DDSGNFVNDNTLTVYIKRLREKIEDNPYEPDIIKTVRGMGYKI 223


>gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 228

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++        +G  +E     E           DV  ++  +   G    
Sbjct: 5   ILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLG--GY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R + +   + ++ ++    +   +   + G DD ++KP   RE+LAR+ A+ RRL+ 
Sbjct: 63  EVCRRLESRKGIGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRRLER 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        GP+RV    R  E+      L  +E  +L  L+++ G+   + ++  
Sbjct: 123 EGAPAPEGTEVVLGPLRVRPSSRTAELGAIALDLTPKEFDVLALLVSHAGRVYTRDELLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++  FD       V+ HI +LRKKL        + +   +GY 
Sbjct: 183 QVW-SFDYVGGTRTVDIHIQRLRKKLEPHQA--ILQTVYGIGYK 223


>gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 229

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        DG  ++  ++      +      D+  ++  L   G   L
Sbjct: 3   ILVVEDERELLESIGEGLRIDGYYVDLLDNGTEALEMAQIEPYDLILLDLNLP--GIDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +RA HS+  ++ +S   ++   +   D+G DD + KP    E+ ARV  + RR  
Sbjct: 61  ELLRTLRAQHSETKVLILSARSAVSDRIVGLDAGADDYLVKPFAFGELEARVRNLLRREY 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G +R  +  R    +G    L ++E  ILEYLM ++G+ V+  ++ S  + 
Sbjct: 121 TQGETFLDCGDLRFDTTTRRLSAKGVEISLTKKETAILEYLMRHKGRVVSSEELLSHAW- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D +V+   N V  HI  LRKKLR+ LG DP+ +K   GY +
Sbjct: 180 --DSSVDPFSNSVRVHICSLRKKLRSVLGCDPISNKIGEGYYL 220


>gi|323343003|ref|ZP_08083234.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463067|gb|EFY08262.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 252

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALF-GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +        +D +  E FN +E  E L      D+  ++  +       
Sbjct: 20  ILICDDERDIVNALKIYLSQEDYIIYEAFNGVEALEILV-QEHIDLVLLDVMMPV--MDG 76

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE    IR  + +P+I ++        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 77  LEAMMHIRKTTTIPIILLTAKGEDTDKILGLNVGADDYITKPFNPMEVIARVKSQLRRYT 136

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +++  + G + +  + +   + G+       E  IL++LM +  +  +   I
Sbjct: 137 QFNQGYVETSHILKVGGLELNDETKSVSMDGKQVRCTPTEFDILKFLMEHPNRVFSPKHI 196

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++        E  V  HI  LR+KL  N             GY I+
Sbjct: 197 YEHVW-KDHSYGAEGTVAVHIRHLREKLEINPSEPRYFKVVWGQGYKIE 244


>gi|62258001|gb|AAX77759.1| unknown protein [synthetic construct]
          Length = 264

 Score =  217 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +       F ++G+        +   +L ++   DV  I+  +       + 
Sbjct: 34  LVADDDKKIAQFIKTKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWMMPY--LDGIS 91

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L +I+R  +   P+I +S   S +  ++   SG DD + KP    E++ RV  +Y+R K 
Sbjct: 92  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 151

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 ++   G I +     +     E+  L +RE ++L  L+ ++ + V+KT I   +
Sbjct: 152 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 211

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 212 WD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 253


>gi|300785437|ref|YP_003765728.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794951|gb|ADJ45326.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D     +        +  S+   +         +    D+  ++  +   G   LE
Sbjct: 6   LVAEDDVKQAELLRRYLRREAHSVLVVHDGREAVDQAALRHPDLLVLDVMMP--GLDGLE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP++ ++   + +  L  FD G DD V KP   RE++ARV ++ RR   S
Sbjct: 64  VVRALRRESDVPVLLVTARSTAEDKLAGFDLGADDYVTKPYDPRELMARVRSLLRRAGPS 123

Query: 123 NNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +R       G + +        V          E RILE LMA  G+ +++ Q+ +  +
Sbjct: 124 GSRPVLPLRVGALLLDQIRHTVRVHDRPIDCTPAEFRILEALMAEPGRVLSRRQLLNQAH 183

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G  D  V E   ++H+  LR+K+  +    + + +   +GY I
Sbjct: 184 GQ-DTFVTERTADAHLKNLRRKIEADPRRPEYLHTVYGVGYKI 225


>gi|315498662|ref|YP_004087466.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315416674|gb|ADU13315.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 241

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    S    + +       +  ++  +   GE  L
Sbjct: 14  ILVVDDDFDLRELISGFLSQNGFEVHTAASGREMDKVLQRGDIGLVVLDYMMP--GEDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + + +      P+I +S        +   + G DD + KP H RE+LAR+ A+ RR   
Sbjct: 72  SICKRLNQKGGPPVIMLSAKGEEIDRIVGLELGADDYLAKPFHPRELLARIRAVMRRGDG 131

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +         + +  R  +   G    L   E  +L   +   G+ + + QI  
Sbjct: 132 RGQGEKSPLTTFFGWTLDNIKRTLQRPDGVQVALSNAEFELLRVFLERPGRALTRDQILD 191

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
            ++G   +  +   ++  IS+LR+KL      G + + + R +GY  
Sbjct: 192 HLHGPNSDNFD-RAIDVQISRLRRKLNDEANDGEEIIRTIRGIGYMF 237


>gi|332561563|ref|ZP_08415876.1| two component transcriptional regulator, winged-helix family
           protein [Rhodobacter sphaeroides WS8N]
 gi|332274065|gb|EGJ19383.1| two component transcriptional regulator, winged-helix family
           protein [Rhodobacter sphaeroides WS8N]
          Length = 229

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ +       + G +++    L   +   + A  D++ ++  L       +
Sbjct: 13  ILLIEDDEVLGNAVADHVAEAGHTVDRAKCLSEADDSLAVATYDLALLDLMLPD--GLGI 70

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R  RA     P+I ++    +   +D  ++G DD + KP    E+ AR+ ++ RR  
Sbjct: 71  PFLRKRRARGDSTPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYG 130

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N     G   V    R    +G   PL  RE  +LE  +A   + ++K Q+   ++ 
Sbjct: 131 GNPNPVVRLGAFEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLW- 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F+  +E N +E ++S+LR+KL +      +++ R LGY +
Sbjct: 190 SFEAEIESNAIEVYVSRLRRKLDHS----VIETVRGLGYRL 226


>gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
          Length = 247

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + +         G  +    +           R D   ++  +   G     
Sbjct: 24  LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMP--GMDGFG 81

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P + ++   SLQ  +     G DD V KP    E++AR+  I RR   
Sbjct: 82  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N      R     I +  +  +    G+   L   E  +L Y + N G  ++K +I   
Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES++  LR+K+ +      + + R +GY +
Sbjct: 202 VW-RYDFGGDVNVVESYVLYLRRKI-DTGEKRLLHTLRGVGYVL 243


>gi|56476560|ref|YP_158149.1| two component response regulator [Aromatoleum aromaticum EbN1]
 gi|56312603|emb|CAI07248.1| Two component response regulator [Aromatoleum aromaticum EbN1]
          Length = 226

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D     D       + G  ++          L      D+  ++  L    G  V
Sbjct: 3   ILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALDGDYDLMVLDVMLPSLDGWGV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R  R+   +P++ ++    ++  +   + G DD + KP    E+LARV  + RR K
Sbjct: 63  LQTVR--RSGRDMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R     G    L  +E  +LE L+  +G+ + ++ I S ++ 
Sbjct: 121 AKEPEVYSAGDLELDLLRRRVTRAGVKIDLTSKEFALLELLLRRQGEVLLRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDSDTNVIEVAVRRLRAKVDDPFEPKLIRTVRGMGYVLE 221


>gi|126444717|ref|YP_001061957.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126224208|gb|ABN87713.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
          Length = 220

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G       +G +++   + +       +    +  ++  L  K    L 
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWAQNADAATLALRTTSYGLLLLDLGLPDK--DGLA 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +   +R     +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VLAALRRRDGALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G +R+           E   L  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 122 RAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDTILTVRGVGYRI 216


>gi|228928237|ref|ZP_04091278.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228946799|ref|ZP_04109104.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229122717|ref|ZP_04251927.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201]
 gi|228660768|gb|EEL16398.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201]
 gi|228812923|gb|EEM59239.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228831284|gb|EEM76880.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 245

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  ++   + +            +  ++  L   G    
Sbjct: 30  ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLP--GMNGH 87

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 88  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 147

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+ N G+ ++   I S ++G +
Sbjct: 148 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 206

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL +    + + + R +GY ++
Sbjct: 207 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLE 242


>gi|167893004|ref|ZP_02480406.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
          Length = 237

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       +  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 219


>gi|221065560|ref|ZP_03541665.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220710583|gb|EED65951.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 227

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G   +   +      L       +  ++  L   G    
Sbjct: 3   ILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVMLP--GLNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R     +P++ ++    ++  +   + G DD + KP    E+LARV  I RR  
Sbjct: 61  QVLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGH 120

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +N         + +    R     G+   L  +E  +LE LM   G+ + ++ I S ++
Sbjct: 121 PANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  + +LR K+        + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRVKIDEGHSIKLIQTVRGMGYVLEV 223


>gi|89899315|ref|YP_521786.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344052|gb|ABD68255.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 227

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D +++ DG  A     G  ++        E   +      + ++  L  K    +
Sbjct: 3   ILLAEDDSMLGDGLRAGLRQLGFQVDWVRDGLAAERELACGDYAAAVLDLGLPLK--DGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA     P++ ++   ++   +   D G DD V KP+   E+ AR+ ++ RR  
Sbjct: 61  DVLQAVRASKITTPVLVLTARDAVPDRIRGLDLGADDYVVKPVDLHELGARLRSLVRRAH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   +  E   L  RE  +L  LM N  + +++ Q+   +Y 
Sbjct: 121 GQMQDVLRCGAVLLEPSARRVSLNDEPVALSTREFDLLHVLMLNADRVLSREQLEQQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   VE N +E HI  LR+KL+     D + + R +GY++
Sbjct: 180 SWGYEVESNAIEVHIHHLRRKLQ----PDLIQTVRGIGYTV 216


>gi|54022513|ref|YP_116755.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014021|dbj|BAD55391.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 239

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ +         G  +E   +++  + L  +      A+   ++  G     
Sbjct: 15  LVVDDEPMIVELLSVSLRFQGFEVE--TAVDGAQALDKARSFRPQAMIVDVMMPGIDGFG 72

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L   +RA     P++ ++    +Q  +     G DD + KP    E++AR+  + RR   
Sbjct: 73  LLPRLRADGIDAPVLFLTARDDVQDKVAGLTLGADDYITKPFSLEEVVARLRVVLRRAGH 132

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ++R     I +  D  +    G    L   E  +L Y M N G  ++K +I   
Sbjct: 133 GAPVRESSRIRFEDIELDDDTHEVWKAGVPVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 192

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   E  VVE+++S LRKK+ +      + + R +GY +
Sbjct: 193 VW-RYDFGGEVGVVETYVSYLRKKV-DTGERRLIHTLRGVGYVM 234


>gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 234

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +   NS      +      D   ++  +   G    E
Sbjct: 10  LVVDDEPNIVELLTVSLKFQGFDVYSANSGNEALRIAREINPDAYIMDVMMP--GMDGFE 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA     P++ ++   S+   +     G DD V KP    E++ R+  I RR   
Sbjct: 68  LLGKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNA 127

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +++          + +  D  +    GE+  L   E  +L YLM NR   ++K++I   
Sbjct: 128 VDDQDGSATMTYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMQNREVVLSKSKILDN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGDTPLIHTVRGVGYVL 229


>gi|90414398|ref|ZP_01222375.1| putative DNA-binding response regulator [Photobacterium profundum
           3TCK]
 gi|90324511|gb|EAS41067.1| putative DNA-binding response regulator [Photobacterium profundum
           3TCK]
          Length = 219

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 104/224 (46%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ +  I     +G   E  +      +  +S   DV  ++  L       L
Sbjct: 3   ILVVEDEIILGEQIIDGLESNGWIAELSSDGIDALYRATSEPWDVIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S    L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKSIRDENVNTPVVILSARNELTQRVEGLNAGADDYLTKPFQMVELIARLRAQLRRST 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   +   + + +   +   QG+V  L   E ++L YLM N  K +++T++   IY 
Sbjct: 121 GNASPVIQVQELSLDTRTSNVLWQGQVVDLTALEFKVLSYLMHNTDKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  I ++R+K+    G D + + R LGY I+ N
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRRKI----GNDVIKTVRGLGYRINAN 219


>gi|302382397|ref|YP_003818220.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302193025|gb|ADL00597.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 239

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++      G  G    G  S    +   +S   D+  ++  +   GE  L
Sbjct: 8   ILVVDDDPGIREVLCEYLGQHGYEARGAASAAEMDRALASGPTDLIVLDLMMP--GEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +      P++ +S        +   + G DD + KP + RE+LAR+ A+ RR + 
Sbjct: 66  SVVRRLSGTP--PVVMLSAMGEDTDRIVGLELGADDYLAKPCNPRELLARIRAVLRRPRD 123

Query: 122 SNNRAE----TGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +  AE         +    R+ +   GE   L   E  +L   +   G+ + + Q+  A
Sbjct: 124 DDTPAEAALTFDGWTLDLVRRELKRSNGEPVQLSAGEFGLLRAFVERPGRVLTRDQLLEA 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             G  +  V +  ++  IS+LRKKL +  G D + + R  GY  D
Sbjct: 184 ARGT-EADVFDRAMDVQISRLRKKLDDGSGRDLITTIRGEGYRFD 227


>gi|229068336|ref|ZP_04201639.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229177176|ref|ZP_04304565.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228606357|gb|EEK63789.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228714797|gb|EEL66669.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 225

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHSEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|197106149|ref|YP_002131526.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196479569|gb|ACG79097.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 223

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D        +    + G   +  ++ + EE L+++   +   +    +      +
Sbjct: 3   ILIVEDDLEAAGVMVRGLTEAGH--DCVSAADGEEGLKAARDGEFDVMIVDRMMPKMDGV 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L   +R      P++ +S    +   +D   +G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TLVETLRREGDRTPVLFLSALGEVADRVDGLQAGADDYLVKPYAFPELIARIEALARRRD 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N     G + +    R     G+   L  RE ++LE++M + G+ V +T +   ++
Sbjct: 121 TGSVNTLLRVGELEMDLIARTVHRAGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +    + NV++ HIS+LR K+        + + R  GY +D
Sbjct: 181 -HYHFDPQTNVIDVHISRLRSKIDKGFDRPMLQTVRGAGYRLD 222


>gi|187935582|ref|YP_001887366.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187723735|gb|ACD24956.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 242

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 90/241 (37%), Gaps = 27/241 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +   ++G  + E    L    +  +  ++  L        
Sbjct: 6   ILVVEDEFSINDTLKFALSKENFEVKGAYNGESALKLLEEFQPHLVLLDIMLPD--ISGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I       +I ++    +   +   + G DD + KP   RE++AR+ AI+R    
Sbjct: 64  ELCKSISQKFY--VIMLTARDDVIDKILGMEIGADDYITKPFEIREVIARINAIFRTAGK 121

Query: 122 ----------------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
                                 +        I +  + R     GE   L R+E  +L Y
Sbjct: 122 NIWNNENNNMIMNVLECNTNDDNKGNTVEDEISINFNTRTVIKDGEEIILKRKEFELLSY 181

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L  N+G    + Q+ + ++G +D   +   V+ HI +LR  L        +++   +GY 
Sbjct: 182 LYKNKGIVFTRQQLLNEVWG-YDYYGDTRTVDVHIRRLRANLGEDKENSVIETVFGVGYV 240

Query: 220 I 220
           I
Sbjct: 241 I 241


>gi|158336600|ref|YP_001517774.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306841|gb|ABW28458.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 227

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +              ++     E       +A  ++  ++  L       +
Sbjct: 3   ILLVEDDDRIAKPLAEDLRHQHYVVDVAADGESGWHYTQTADYELILLDLMLPR--LDGI 60

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L + +R       ++ ++   +L   +   D+G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  SLCQQLRRSGYSGFVLMLTAKDTLTDKVMGLDAGADDYVVKPFELDELAARIRALCRRPP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  +  + G +++            +  L  +E  +LE+L+ + G+   +  +   ++ 
Sbjct: 121 QIQPSILKQGALQLDPIHHHAHYGETLLDLTPKEYILLEHLLQHPGQVFTRAMLLDRLWE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           L D A  E  V++HIS LR KL+   G D  +++   +GY ++
Sbjct: 181 L-DRASSEGTVKTHISNLRCKLKAAGGSDQLIETLYGVGYRLN 222


>gi|126702215|gb|ABO26811.1| CpxR [Tatlockia micdadei]
          Length = 223

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D  +     +G  +   +  E       +   D   ++  L        
Sbjct: 5   ILIVDDDTELTDLLVQYLEPEGFEVVCVHDGENAVKKALNQPFDAIILDVMLP--KLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR H + P++ ++        +   + G DD + KP + RE++AR+ AI RR + 
Sbjct: 63  EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   I V          GEV  L   E  ILE L+ + G+  +K ++     
Sbjct: 123 IPAQRPIIEHQGILVDE---SLPNHGEVLELTNAEFNILEMLIKSPGQAFSKEELTEYAL 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           G    A +   ++ HIS LR KL +    +P + + R  GY  +
Sbjct: 180 GRKYTAYD-RSIDVHISNLRNKLGDNEEGEPIIKTVRGFGYMFN 222


>gi|94985622|ref|YP_604986.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94555903|gb|ABF45817.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 227

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + +   A    +G   E             +A+ D+  ++  L   G   
Sbjct: 4   LILIVEDEPQLAEVLEAYARQEGYRTERAGDGLAALTAYRAAQPDLILLDVMLP--GRSG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L++ + +RA    P+I ++        +   + G DD V KP   RE++ARV A+ RR  
Sbjct: 62  LDVLKTVRADGPTPVILVTARAEETDQIVGLELGADDYVVKPFRPREVMARVKAVLRRAH 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             L+ +      GP+ V        V G+   L   E R+L YL    G+   + ++ +A
Sbjct: 122 AALEGTERPLRVGPLEVDRRAARARVNGQPLGLTPAEFRLLAYLAQVPGRACTREELLAA 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              L D    E VV++H++ +R+KL      + + + R +GY ++
Sbjct: 182 A--LPDSDALERVVDAHLASVRRKLDAAQAGELLHTVRGVGYRLE 224


>gi|30265287|ref|NP_847664.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530822|ref|YP_022171.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188099|ref|YP_031352.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65317232|ref|ZP_00390191.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869866|ref|ZP_02214523.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167641807|ref|ZP_02400048.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170708959|ref|ZP_02899391.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177654055|ref|ZP_02936065.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567646|ref|ZP_03020558.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227818024|ref|YP_002818033.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601800|ref|YP_002869478.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254735190|ref|ZP_05192899.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254755698|ref|ZP_05207731.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759571|ref|ZP_05211596.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259965|gb|AAP29150.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505970|gb|AAT34646.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182026|gb|AAT57402.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714189|gb|EDR19709.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510219|gb|EDR85624.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170126124|gb|EDS95019.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172080938|gb|EDT66017.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561062|gb|EDV15035.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006593|gb|ACP16336.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229266208|gb|ACQ47845.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREVLERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+   E G I +    R   V  +   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL N    + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLDC 223


>gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255297105|gb|EET76430.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 234

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +            +   NS      +      D   ++  +   G    E
Sbjct: 10  LVVDDEPNIVELLTVSLKFQDFEVYSANSGNEALRIAREVNPDAYILDVMMP--GMDGFE 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R      P++ ++    +   +     G DD V KP    E++ R+  I RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +             + +  D  +    GE+  L   E  +L YLM N+   ++K++I   
Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+ +      + + R +GY +
Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGETQLIHTVRGVGYVL 229


>gi|182419810|ref|ZP_02951050.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237666867|ref|ZP_04526852.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376358|gb|EDT73940.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237658066|gb|EEP55621.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 231

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 106/225 (47%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   ++D        +  ++  F + + +E L     E +  I   ++      +
Sbjct: 3   ILIAEDEKDIRDLISLHMKKENHNV--FEASDGKEALDIFECEKIDLILVDIMMPKINGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +R  S +P+I I+   S    +     G DD + KPI   E+ ARV++  RR  +
Sbjct: 61  AVIQKVRESSTIPIICITAMGSDSDKVLALGIGADDYLVKPISPIELCARVSSHLRRCYR 120

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + NR +   TG ++++SD  +     +   L  +E +IL+ L++N G+   K QI+  +
Sbjct: 121 YTENREDAYATGDLKIYSDTFEVYKGDKKIELNPKEFKILKLLISNAGRVFTKKQIYEQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +G      + N +  H+S +R+K+ +       + + R +GY I+
Sbjct: 181 WGEI-YIGDSNNIMVHLSHIREKIEDDPKNPVYIKTIRGIGYKIE 224


>gi|242237847|ref|YP_002986028.1| DNA-binding transcriptional regulator BasR [Dickeya dadantii
           Ech703]
 gi|242129904|gb|ACS84206.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 222

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 104/220 (47%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL+++G +    ++G + +   + +  + L +SA   +  ++  L   G+ + 
Sbjct: 3   LLIVEDDALLQEGLLQAMRNEGYTCDCATTAKEADALINSAHYSLIVLDLGLPD-GDGLT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R        P++ ++   ++   +   + G DD + KP    E+LAR+ A+ RR + 
Sbjct: 62  LLTRWRNNQHSQPVLILTARDTVDERVTGLNIGADDYMIKPFALSELLARIRALIRRHQG 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S+ N  +   I +  + +   +  +   L  +E  IL  L+   G +V +  +   IY  
Sbjct: 122 SSENLIQVDNITLDLNSQQVMLDSKPVILTPKEFAILSRLILKAGSQVHREVLHQDIYN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D+    N +E HI  LR+K+    G + + + R  GY +
Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI----GKNRIKTLRGFGYLL 216


>gi|331085187|ref|ZP_08334273.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407970|gb|EGG87460.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 91/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +    + + +E      R D S I   L+      +
Sbjct: 6   ILLIEDDKEISEMLKNYLTVENYEV--ICAYDGQEACDYFDRTDFSMILLDLMIPKINGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR HS VPLI IS   S          G DD + KP    E+LAR+ A  RR   
Sbjct: 64  DVMQHIREHSVVPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRRRNQ 123

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +        R   G + +          G    L  +E  IL+ LM +  K   K QI+
Sbjct: 124 YDQGSEDVPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           + ++       +EN V  HIS+LR K+         + +   +GY +  N
Sbjct: 184 ALVW-KDAYLGDENAVNVHISRLRNKIEEDTRNPRYIITVWGIGYKLGEN 232


>gi|261407193|ref|YP_003243434.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283656|gb|ACX65627.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 227

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 96/223 (43%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           F+L++D   +  G       +  S    + +   + + +   +  +     L        
Sbjct: 3   FLLVEDDKTIASGLEYSLQQERYSTVICHDVASAKQVLAEDIDQFALCLFDLQLPDGSGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL ++++    +P+I ++        +   D G DD + KP   RE+L+R+ ++ RR + 
Sbjct: 63  ELCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYQK 122

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N+  +   IR+ +        G    L   E R+L     + G+ +++ Q+   I+
Sbjct: 123 PSQVNSIMDIDDIRINTLEGKVFKNGAEIALTALEYRLLLIFGNHIGQVLSRNQLLEQIW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +  + V +N +  +I +LR+KL +  G    + + R LGY +
Sbjct: 183 DVAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYKV 225


>gi|229819736|ref|YP_002881262.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565649|gb|ACQ79500.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 227

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   D       +            + D+  ++  L   G+  +
Sbjct: 5   ILVVDDDPAISEMIGIVLESDDFDAVFCDDGALAVERFREEKPDLVLLDLMLP--GKDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R IR  S VP++ ++        +   ++G DD + KP   +E++ARV A  R+   
Sbjct: 63  EVCREIRRTSGVPIVMLTAKSDTVDVVRGLEAGADDYIAKPFKPKELVARVRARLRQSDD 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + +   G       E   L   E  ++  L     +   +  +   ++G 
Sbjct: 123 GEQERLRIGDLVLDVAGHRVLRGDETISLTPLEFDLVVALARKPWQVFTREALLEQVWGY 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
             +A +  +V  H+ +LR K+ R+    + V + R +GY 
Sbjct: 183 RHQA-DTRLVNVHVQRLRAKVERDAEHPEVVVTVRGVGYR 221


>gi|167579523|ref|ZP_02372397.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 225

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D  +  +  +      G +++   +         S   DV  ++  L   G   L + 
Sbjct: 7   IEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLP--GVDGLTIL 64

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
             +R+   + P++ +S    +   +    +G DD + KP    E+ AR+  + RR + S 
Sbjct: 65  TTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMTARLEVLLRRSQASP 124

Query: 124 NRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ET    GP+ +    R     G    L   E R+LE++M + G+ + +  +F A++G
Sbjct: 125 APFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ H+ +LRKK+        + + R  GY +
Sbjct: 185 -YHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYIL 224


>gi|152996350|ref|YP_001341185.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837274|gb|ABR71250.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 227

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + DG +     +G +++  +         ++   D+  ++  L       L
Sbjct: 9   ILVVEDDLSLADGLVTALKREGYTVDLLHDGIHALEALANEVFDLVVLDLGLPR--LDGL 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + +RA+   VP++ ++   +L+  +   D G DD + KP    E+ AR  A+ RR  
Sbjct: 67  AVLKQLRANENAVPVLILTARDALEDRVAGLDLGADDYLVKPFDVTELKARARALLRRSY 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      + +F        Q +   L RRE  +L  L++  G    +  +   +YG
Sbjct: 127 GRAISEIHYKGLVLFPASHKVTYQDKDVNLTRREYSLLHELVSQPGHVFTRDVLQQLMYG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E HI  LRKKL      + + + R +GY +D
Sbjct: 187 WGDD-VESNALEVHIHHLRKKL----FPELIRTIRGIGYVVD 223


>gi|77459994|ref|YP_349501.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383997|gb|ABA75510.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 222

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A     G +++         +  SS   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELLAGLQRQGYAVDWLADGRDAVYQGSSEPYDLIVLDLGLP--GVPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+    RA    +P++ ++   S    ++   +G DD + KP H  E+  R+ ++ RR K
Sbjct: 61  EVLAQWRAGGLTIPVLILTARDSWAERIEGLKAGADDYLTKPFHPEELYLRIQSLLRRSK 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   +   + +    +     G    L   E R+L Y M +  + ++K+ +   +Y
Sbjct: 121 GQANQPTLKAAGLHLDEGRQCVVRDGADIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +   + NV+E H++ LR+KL    G   ++++R  GY
Sbjct: 181 DG-ETERDSNVLEVHVNHLRRKL----GKSVIETRRGQGY 215


>gi|226356996|ref|YP_002786736.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226318986|gb|ACO46982.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 229

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V+I+D   V+D         G+ +   +S      L+     D   ++  L   GE  L 
Sbjct: 5   VVIEDEGTVRDVLRFHLERAGLRVTALDST--HGALEQLGGADALVLDWMLP--GESGLG 60

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             R +RA ++   +P++ ++   +    ++  +SG DD + KP    E++ARV A+ RR 
Sbjct: 61  FLRRLRADAELRRMPVLMLTARAAEAERVEGLESGADDYLTKPFSAAELVARVRALLRRS 120

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  S      GP+ V  +  +  V G+   L RRE  +L +L  N G+  ++T++   ++
Sbjct: 121 QPDSPPTLTNGPLIVDVNAAEARVSGKRLNLTRREFDLLAFLTQNTGRVYSRTELLDRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G  D    E  V+ H+++LR  L  +    D +++ R  GY +
Sbjct: 181 GA-DFLGGERTVDQHVTQLRAHLGDDPSKPDFLETVRGKGYRM 222


>gi|313899606|ref|ZP_07833114.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2]
 gi|312955591|gb|EFR37251.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2]
          Length = 229

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 91/222 (40%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D   +  G +     +G  +   +              D+  ++  L        
Sbjct: 5   LLFVEDDQAIAMGLVYTLKKEGYEVVWCDHKRSALQQLDQQTFDLLLLDVGLPD--GSGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           ++    ++   VP++ ++        +   D G DD + KP    E+L+R+ ++ RR  +
Sbjct: 63  DICTYAKSRQDVPVLFLTALDDEGNVVMGLDMGGDDYITKPFRINELLSRMRSVQRRYHR 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  +   + ++        + E   L   E R+L   + +  + ++++Q+   I+  
Sbjct: 123 QEEDIVQIQYLSIYPKQGKVYREQEEVLLTALEYRLLMVFINHPQQVLSRSQLLEGIWDA 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             + V +N +  +I +LR+KL R+      + + R LGY ++
Sbjct: 183 AGDFVNDNTLTVYIKRLREKLERDPQNPSIIVTVRGLGYRLE 224


>gi|326203229|ref|ZP_08193094.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986487|gb|EGD47318.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 223

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 95/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +    + +  E +Q     +   I   ++       
Sbjct: 4   ILIVDDEAGIRDIIKKYAVFEGHEV--VEAADGMEAIQVCREMEFDIIVMDVMMPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + IR     P++ +S        +  F+ G+DD V KP   +E++ RV AI +R   
Sbjct: 62  SACKEIRKFCMTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVNAIVKRSSG 121

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +      + V   GR   +  E   +  +E  +  Y++ NRG  + + ++ + +
Sbjct: 122 DKGNKKDIFTIEGLTVDFTGRLVYIDNEKIDMSPKEYDLFFYMVKNRGIALTRERLITDV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   ++  +++HI  LRK L +      + + R +GY  +
Sbjct: 182 WG-YDFFGDDRTLDTHIKLLRKSLGDY--SKNIVTLRGVGYRFE 222


>gi|296123001|ref|YP_003630779.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296015341|gb|ADG68580.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 225

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +       F + G       +         S + D   ++  L   GE   +
Sbjct: 4   LVIEDDPAIGRSLQQGFSEAGHHCVWQQNGISGYETALSRQADAIVLDLLLP--GESGWD 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA   Q P+I ++   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 62  VLQKLRAAGVQAPIILLTALGSIDDRVKGLKLGADDYLVKPFDFAELMARLEAVQRRTGN 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   +   + +    R        +   L   E  +LE LM   G+ V +  +   ++
Sbjct: 122 KPSMILQAAGLTLDLTTRRVTSNDTEKEIDLTPIEFSLLELLMRYAGQVVTRKMLCEHVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G F+     NV+E H+++LR KL        + + R  GY++
Sbjct: 182 G-FNWDGTTNVIEVHVNRLRGKLDKDRDQSIIKTVRGRGYAL 222


>gi|237734082|ref|ZP_04564563.1| DNA-binding response regulator [Mollicutes bacterium D7]
 gi|229382908|gb|EEO32999.1| DNA-binding response regulator [Coprobacillus sp. D7]
          Length = 236

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 94/233 (40%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G ++   N+ +    L+   R D+      ++      +
Sbjct: 6   ILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKA--GLEMVERYDIHLAIVDIMMPVMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   IR +   P+I +S        +   + G DD V KP    E+LARV++  RR   
Sbjct: 64  EMTMKIRENYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHK 123

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       + N+   G + +  D ++  V G+   +   E +ILE LM   G+  +
Sbjct: 124 YLNMIGKIQEDQAANKYVVGGLELDLDTKEVSVDGKAVKVTPIELKILELLMEKPGRVFS 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             QI+  ++   + A+    V  H+  LR+K+  N      +     +GY I+
Sbjct: 184 SEQIYENVW--HEAAINTETVMVHVRNLREKIEINPSNPQYLKVVWGVGYKIE 234


>gi|90962157|ref|YP_536073.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius UCC118]
 gi|227891180|ref|ZP_04008985.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|90821351|gb|ABD99990.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Lactobacillus salivarius UCC118]
 gi|227867054|gb|EEJ74475.1| response regulator [Lactobacillus salivarius ATCC 11741]
          Length = 233

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 97/231 (41%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G  ++  N+         + + D   ++  L   G   +E
Sbjct: 5   LVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLP--GIDGIE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR       ++ ++        +   + G DD + KP   REI+AR+ A+ RR++ 
Sbjct: 63  ITKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRRVEH 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++ +E         G   V  D  +       +  L  +E  +L Y +  +G+ + + +
Sbjct: 123 YSDNSEKDSKNKYYFGNYMVNLDSYELRDKNNNLIKLTPKEFELLVYFLRKKGRVLGREE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSID 221
           + + ++G FD   +  +V+ H+S LR+K+       P+   + R  GY  +
Sbjct: 183 LLNNVWG-FDYIGQTRMVDMHVSHLREKIEENP-KKPIFLKTVRGFGYRFE 231


>gi|116751092|ref|YP_847779.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700156|gb|ABK19344.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 263

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D       + G  ++   +      L      D   I+  L       LE
Sbjct: 35  LVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPV--MDGLE 92

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R      P++ +S   S+   +   + G DD + KP    E+LARV ++ RR KV
Sbjct: 93  ILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSKV 152

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    +   G + +    R      E F L  +E  +LEYLM N+G+ V + +I   ++G
Sbjct: 153 NQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVWG 212

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++     NVVE HI +LR+KL        + + R  GY++
Sbjct: 213 -YNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYAL 252


>gi|332087272|gb|EGI92404.1| transcriptional regulatory protein qseB [Shigella dysenteriae
           155-74]
          Length = 210

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 9/213 (4%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+ DG        G S++ F      +    SA  D   ++  L   G    ++ R  R 
Sbjct: 2   LIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGRDILREWRE 59

Query: 70  HSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAE 127
             Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR    ++N   
Sbjct: 60  KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELR 119

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y  +DE V  
Sbjct: 120 HGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY-TWDEEVTS 178

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N VE H+  LR+KL    G D + +   +GY++
Sbjct: 179 NAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 207


>gi|238796538|ref|ZP_04640045.1| Transcriptional regulatory protein creB [Yersinia mollaretii ATCC
           43969]
 gi|238719516|gb|EEQ11325.1| Transcriptional regulatory protein creB [Yersinia mollaretii ATCC
           43969]
          Length = 229

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  L++D   + D  I     +G +L  F+  E      ++    ++ ++  L       
Sbjct: 1   MIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALANGPPALAIVDVGLPD--ING 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R + A   ++P++ ++        +   + G DD + KP   RE+ ARV  + RRL
Sbjct: 59  FELCRRLLAQMPELPVVFLTARSEELDRIVGLEMGADDYIAKPFSPREVSARVRTVLRRL 118

Query: 120 KVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + S   +      + G   +   G       +V  L R E  +L+ L+    +  ++ Q+
Sbjct: 119 QKSQTLSVPAALHQFGHFTLDEAGARVTYHQQVLWLTRYEYLLLKTLLLAPERIFSRQQL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++   +E+ ++  V++HI  LR KLR       P+ + R LGYS+
Sbjct: 179 MDIVWAQAEES-QDRTVDTHIKTLRSKLRMTYDEESPIRTHRGLGYSL 225


>gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
 gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
          Length = 219

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +         G   +  F+  E  + L      D+  ++  L       
Sbjct: 4   ILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRL-DQEGFDLILLDIMLPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR   ++P+I ++   + +  +    +G DD + KP    E+LARV  + RR +
Sbjct: 61  YELMDYIRPL-EIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRRCQ 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +R + G + +    R  + QG+   L  +E  +L  L+ N+   + +  I+  I+G 
Sbjct: 120 KTESRLKEGDLEIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKIWGS 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                +   V+ H+ +LRKK+  +     + +   +GY ++
Sbjct: 180 G-YMGDSRTVDLHVQRLRKKIGWEHK---IKTVYKVGYRLE 216


>gi|153934205|ref|YP_001384185.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934696|ref|YP_001387726.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226949224|ref|YP_002804315.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|152930249|gb|ABS35749.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930610|gb|ABS36109.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226844186|gb|ACO86852.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 228

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G  +    +    E ++   + D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFEDQGYRV--ITASNGREAIEYCDK-DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QVCQKIRDKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + ++   G + +  + R    + E      +E  I+E L  +  +  +K QI+  +
Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSID 221
           +G +D   + N V  HI K+R K ++  +  + + +   +GY  +
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGYRWE 225


>gi|238792041|ref|ZP_04635677.1| Two-component system response regulator [Yersinia intermedia ATCC
           29909]
 gi|238728672|gb|EEQ20190.1| Two-component system response regulator [Yersinia intermedia ATCC
           29909]
          Length = 227

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +        G +G + E   + +       S       ++  L       +
Sbjct: 3   ILLVDDDVELGTMLREYLGGEGFNAELVLTGKAGIAAALSGDYTALILDIMLPD--MSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R +R  S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 61  DVLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDE 120

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   ++    G + +    R  E QG+ F L   E  +LE L+ +  + V K ++ 
Sbjct: 121 HPDVSSADDSIISHGDLTLNPSTRSSEWQGKAFDLTASEFNLLELLLRSPDRVVTKDELS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 DKGLGRPREAYD-RSVDVHISNIRQKLAALAGNKLNIETVRSIGYRI 226


>gi|290955980|ref|YP_003487162.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645506|emb|CBG68594.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 248

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 96/225 (42%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++    +     G S+   ++ +   +     + D+  ++  L         
Sbjct: 16  LVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPD--IDGFA 73

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R +RA     P++ ++    ++  +    SG DD V KP H +E+L R+ AI RR   
Sbjct: 74  VTRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDM 133

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                          + +     +    G    L   E R+L  L+A   + V K +I S
Sbjct: 134 PPSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILS 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D A +  +V++++  LR+K+ ++     + + R +GY +
Sbjct: 194 EVW-HYDFAGDARIVDTYVRNLRRKI-DRFEPQLIQTVRGVGYCL 236


>gi|170690170|ref|ZP_02881337.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
 gi|170144605|gb|EDT12766.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
          Length = 223

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 99/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         +   +++  ++     +L      D+  ++  L   G    
Sbjct: 3   ILIIEDEPKMAAYLRKGLVEASFTVDTADNGVNGLFLALHEEFDLIVLDVMLP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           EL R +R   Q P++ ++   ++   ++  + G DD ++KP  + E LAR+ ++ RR  +
Sbjct: 61  ELLRRLRKEKQTPVLLLTARDTVADKVEGLELGADDYLSKPFAYAEFLARIRSLLRRAPR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + V    R  +       L  +E  +L+ L   +G+ + +T I S I+ +
Sbjct: 121 AVKDVLRIADMEVDFIKRRVKRGDLRIDLTAQEFSLLQLLAERQGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ + +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAVKRLRAKIDNSFETKLLHTVRGMGYVLE 220


>gi|149926997|ref|ZP_01915255.1| two component transcriptional regulator, winged helix family
           protein [Limnobacter sp. MED105]
 gi|149824218|gb|EDM83438.1| two component transcriptional regulator, winged helix family
           protein [Limnobacter sp. MED105]
          Length = 236

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 106/224 (47%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D +L+ +G        G +++        +   ++   D+  ++  L       L
Sbjct: 3   ILLAEDDSLLSEGLSQSLRQAGYAVDCMFKGSDADTALTTMNYDILILDLGLP--KMSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  + +P++ ++   S++  +   D+G DD + KP   +E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARGNNMPVLILTAADSVEQRVQGLDAGADDYMAKPFDLKELEARVRALARRGT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
               +  + GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q    +  
Sbjct: 121 GGGASIWKHGPLTFDQVGRIAYINDDMLDLSAREVGLLEVLLQRVGRLVSKEQFVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E +I +LRKK+   +    + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYIHRLRKKIE--VNGVRIATVRGLGYCLE 219


>gi|331269514|ref|YP_004396006.1| regulatory protein VanR [Clostridium botulinum BKT015925]
 gi|329126064|gb|AEB76009.1| regulatory protein VanR [Clostridium botulinum BKT015925]
          Length = 226

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 101/219 (46%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G       +G ++   ++  +EE  ++  ++ V  +   +    E   
Sbjct: 4   ILIVEDDKLLNKGVKFALEIEGYTI--LDTYNYEEGYKAFLKDKVDLVLLDINLPDESGS 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   IR +S++P+I I+   +    +D F+ G DD ++KP     +  R+ A+ RR  +
Sbjct: 62  KLSMEIRKNSEIPIIFITAKDTESDIIDGFNLGCDDYISKPFSIEVLKQRIKAVLRRTNL 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N       I +  +  D +  G    L  +E R+LE L+ N G+ + +  I   ++  
Sbjct: 122 VENTVFVYEDITIDFNKMDVKKDGISIKLTAKEYRLLELLVKNSGQVLTRRTILEKLWDT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
               V+EN +  +I +LRKK+ +       + +   +GY
Sbjct: 182 DGNFVDENALNVNIRRLRKKIEDDSKNPKYIITVFSIGY 220


>gi|300855686|ref|YP_003780670.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435801|gb|ADK15568.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++    A    +G+++    +   +E L+      V  +   ++       
Sbjct: 5   ILMVDDEERMRFLIEAYLKSEGLNM--IPAGNGQEALEKFNENHVDLVVLDIMMPVMDGW 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              + +R  S VP+I ++     +  L  F  G D  V KP+  + ++A++ A+ +R   
Sbjct: 63  TACKELRKISNVPIIMLTARAEDEEQLLGFQLGTDSYVTKPVSPKVLVAKIKALLKRTYS 122

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  N +     + +  +G + +V  E   L  +E  +L YL+ N+   +++ +I  AI
Sbjct: 123 EEENQNKQNSYDGLYINREGHEVKVDDENVYLSPKEFELLCYLIKNKDIVLSREKILDAI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G+ D   +   V++H+ +LR+KL  K     + + R +GY  + 
Sbjct: 183 WGI-DYYGDLRTVDTHVKRLREKLGVKSY--LIATVRGVGYKFEV 224


>gi|295695240|ref|YP_003588478.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295410842|gb|ADG05334.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 236

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   ++          G       + E      ++ + D+  ++  L     +  
Sbjct: 7   IVIVDDEPQIRKFLRVSLRAHGYETLEAETGEDGLRQVTAGKPDLVILDLGLPD--MRGA 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I +S     +  +   D+G DD + KP    E+LAR+    R    
Sbjct: 65  DVLRAIREWSSVPVIILSVQEQEEEKIRALDAGADDYITKPFGMGELLARIRVALRHSAK 124

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   + G +R+    R+  V G+   L   E  +L+ L ++ G+ +   Q+  A++G
Sbjct: 125 ASGDPVIKLGTLRIDLGTREVTVGGQAVKLTPTEYELLKALASHPGRVMTHRQLLKAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                 + + +  +I +LR+K+         + ++  +GY +
Sbjct: 185 SG-YEQDIHSLRVYIGQLRRKIEEDPARPRWIVTEPGVGYRL 225


>gi|261344617|ref|ZP_05972261.1| transcriptional activator protein Irlr [Providencia rustigianii DSM
           4541]
 gi|282567532|gb|EFB73067.1| transcriptional activator protein Irlr [Providencia rustigianii DSM
           4541]
          Length = 223

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 97/220 (44%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    +        + G  ++         +        +  ++  L   G    
Sbjct: 3   ILLIEDHLKTQGWVKNGLEEAGFLVDVATDGRDGLYFALENNYQLVILDIMLP--GMNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +++R    +P+I ++   ++   +   + G +D + KP    E+LARV    +  + 
Sbjct: 61  DILKVLRTSKNIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKVHQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++       +++     + E  G+   L R+E  +L + + +  + + +T I S ++G+ 
Sbjct: 121 TSTNMTIADLKIDLVRHEVERGGQKIILTRQEFSLLLFFVLHCDEILPRTLIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + N+++  I +LRKK+ +      +++ R +GY ++
Sbjct: 180 DFDSDTNIIDVAIRRLRKKIDDGFDVKLIETIRGMGYRLN 219


>gi|154505591|ref|ZP_02042329.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149]
 gi|153794030|gb|EDN76450.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149]
          Length = 240

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + +  + L+    E V  +   ++      +
Sbjct: 13  ILVCDDDKEIVEAIEIYLTQEGYQV--LKAYDGMQALKMLETETVHLLILDVMMPRLDGI 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  + +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 71  RATLKIRETNSIPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLRRYTQ 130

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G +R+  D ++  V GE+  L   E  IL  LM N+G+  +  QI
Sbjct: 131 LGGNVSSTQETIYEVGGLRINDDLKEVTVDGEMVRLTPIEYNILLLLMKNQGRVFSINQI 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +I+   D    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 191 YESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIE 238


>gi|126735860|ref|ZP_01751605.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126715047|gb|EBA11913.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 220

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           F+L++D   + D  +A    DG +++   +L   +   + A  D+  ++  L        
Sbjct: 3   FLLVEDNNELGDAVVARLSLDGHAVDHAKTLAEADEWLAVADYDLMLLDVMLPD--GDGR 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  R  R   ++P+I ++    +   +D  D G DD + KP    E+ AR  A+ RR   
Sbjct: 61  EFLRKTRTTERMPVIVLTARSQVSDRVDTLDLGADDYITKPFDFGELEARCRAVLRRRGT 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G       G      GE  PL  RE R+LE    N+G+ ++K+Q+   ++  
Sbjct: 121 PTPALIPLGDALFDPSGGTLSHDGETKPLRNRELRLLEVFARNKGQILSKSQLLDRLFSQ 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D  V EN +E ++++LRK+L        +++ R +GY ++W
Sbjct: 181 -DAEVSENAIEVYVARLRKRLFAAGVE--IETVRGVGYRMNW 219


>gi|312135502|ref|YP_004002840.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775553|gb|ADQ05040.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 234

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
            ++DD   + D         G +++ F S E        +  D+  ++  L        E
Sbjct: 7   YVVDDEKDILDLVSEYLTQKGYAVKTFGSGESFLGEFEKSEPDIVILDIMLPD--IDGYE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + IR +S VP+I +S        +   + G DD ++KP    E+ AR+  I RR+K  
Sbjct: 65  ICKRIRKNSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIRKILRRVKRD 124

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +N  E   I+V  + R+    G    L  +E      L+    K + ++ I   I+
Sbjct: 125 SIKQDNVIEVFGIKVDFNQRNVFYNGTHIELSPKEFETFVLLLKESSKVLKRSYILERIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G      +E +V+  I +LRKK+        + +   LGY ++
Sbjct: 185 GDP-ALYDERMVDDVIKRLRKKILQYNLPVEIKTMWGLGYKLE 226


>gi|284036763|ref|YP_003386693.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816056|gb|ADB37894.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 228

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G S E          L  + + ++  ++  L        
Sbjct: 4   ILIIEDDRRIAQNISRSLRVLGYSTEVAYDGFTGRALGLTGQYELIILDINLPD--ISGY 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ R IRA H  +P+I ++    ++  ++  + G DD + KP   RE+ ARVA  +RR  
Sbjct: 62  EICRNIRADHPTLPIIMLTAMGEIEDKIEGLECGADDYIVKPFDLRELSARVATCFRRSD 121

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      +   + +    +          L  +E  +LEYLM ++G+ V+K  +  
Sbjct: 122 LLISSTGEEMLQVADLTLNVTSKVVMRDNTFIELTAKEFALLEYLMRHQGRVVSKIDLAE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++  F+     NVVE +I+ LRKK+  +     + ++  LGY++  +
Sbjct: 182 KVWN-FNFDPGTNVVEVYINYLRKKIDKEFDVKLIHTRPGLGYTLKAD 228


>gi|153814388|ref|ZP_01967056.1| hypothetical protein RUMTOR_00598 [Ruminococcus torques ATCC 27756]
 gi|145848784|gb|EDK25702.1| hypothetical protein RUMTOR_00598 [Ruminococcus torques ATCC 27756]
          Length = 234

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G       S      +    R  V  ++  L   G    E
Sbjct: 12  LIVEDDVNINGLLKEALEKEGYICTQAFSGTEARMILQGERYSVILLDLMLP--GIPGEE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR     P+I ++   ++   ++F   G DD V KP   +E+ ARV    RR + +
Sbjct: 70  VLRDIRKKGNTPVIILTAKDTIDDKVEFLRGGADDYVTKPFDIKEVTARVEVQIRRAETT 129

Query: 123 NNRAE-----TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSA 176
             + E        + +       +V     P + ++E  ILE L+ +  K  +K ++F  
Sbjct: 130 GRKEEEHRFTYQELELNKGDFTVKVGNTELPHITKQEFSILELLLKHPKKVFSKEEMFEY 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +       E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 190 AW-EEQYMGETKTLDVHISNIRKKIKAVTDKEYIETVWGIGYRL 232


>gi|317126129|ref|YP_004100241.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590217|gb|ADU49514.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 248

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 92/233 (39%), Gaps = 17/233 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +    +      G  ++          L      DV  ++  L   G   +E
Sbjct: 15  LVVDDEPSLVRVVVGYLQAGGFEVDSAPDGPTALDLARRTDPDVIVLDVGLP--GMDGIE 72

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  +   ++ ++        L     G DD + KP   RE++ARV  + RR + S
Sbjct: 73  VCRTLRTFTDAYVVMLTARADEVDMLIGLAVGADDYITKPFSPRELMARVQTVLRRPRQS 132

Query: 123 --------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                               G + +    R+  + G+   L R E  +L+ L        
Sbjct: 133 AADRPGAAARGSGEEAARVFGALVIDVLAREVSLGGQPVELTRTEFDLLDTLSERPRVAF 192

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +++ +   I+G    A +E++V+ HI +LR+KL  +      + + R +GY +
Sbjct: 193 SRSLLLERIWGGGAWAGDEHLVDVHIGRLRRKLGDDAREAKYIRTIRGIGYRM 245


>gi|329667608|gb|AEB93556.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 236

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 105/235 (44%), Gaps = 21/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDD----GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   V +     F  +     ++ +G  ++E  +   SS   D+  ++  L  K 
Sbjct: 4   ILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKADPSS--YDIVTLDLNLPKK- 60

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +E+ + IRA S  +P+I ++   S    +     G D+ V KP     ++AR+ A+Y
Sbjct: 61  -DGIEVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALY 119

Query: 117 RRLKVSNN---------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGK 166
           RR  +  +            T  +++  D R+     +V   L  +E  +L  +     +
Sbjct: 120 RRSHLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQ 179

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ ++   ++G ++   EE  V++HI KLR+KL  K G   V +   +GY  D
Sbjct: 180 VFSRDKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232


>gi|319405330|emb|CBI78948.1| two-component response regulator [Bartonella sp. AR 15-3]
          Length = 228

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G + +     +    L  +   DV  I+  L  +    L
Sbjct: 3   ILIIEDDRETGRYLEKAFLEAGHAADIAYDGDTGYALAETVNYDVMVIDRMLPYR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SIVTELRAKGNETPVLILSALGQVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       + + +   L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRRDKNIMLQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLHTVRGAGYML 221


>gi|254250133|ref|ZP_04943453.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124876634|gb|EAY66624.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 236

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L++D  L+  G       +G +++     +     L+++    +          G  VL
Sbjct: 20  LLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRATGYGLLLLDLGLPNRDGLSVL 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
              R  R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR   
Sbjct: 80  AALR--RRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVNRRHAG 137

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      GP+R+        +  +  PL  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 138 RAQTTLAIGPLRLDPVKHLVWLDDDEVPLSPKEFVLLHELMREPGAVISREQFEERLY-S 196

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 197 WGEEIESNAVQVHIHNLRKKL----GHDMIRTVRGVGYRI 232


>gi|56708585|ref|YP_170481.1| two-component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671056|ref|YP_667613.1| two-component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118498037|ref|YP_899087.1| two-component response regulator [Francisella tularensis subsp.
           novicida U112]
 gi|134301461|ref|YP_001121429.1| two-component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931186|ref|YP_001891170.1| two-component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194323262|ref|ZP_03057046.1| response regulator receiver domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|224457767|ref|ZP_03666240.1| two-component response regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254368789|ref|ZP_04984802.1| two-component response regulator [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254371214|ref|ZP_04987216.1| two-component response regulator [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254373393|ref|ZP_04988881.1| two-component response regulator [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374856|ref|ZP_04990337.1| hypothetical protein FTDG_01033 [Francisella novicida GA99-3548]
 gi|254875447|ref|ZP_05248157.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|56605077|emb|CAG46190.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321389|emb|CAL09573.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423943|gb|ABK90333.1| two-component response regulator [Francisella novicida U112]
 gi|134049238|gb|ABO46309.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569454|gb|EDN35108.1| two-component response regulator [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151571119|gb|EDN36773.1| two-component response regulator [Francisella novicida GA99-3549]
 gi|151572575|gb|EDN38229.1| hypothetical protein FTDG_01033 [Francisella novicida GA99-3548]
 gi|157121710|gb|EDO65880.1| two-component response regulator [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712095|gb|ACD30392.1| two-component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194322626|gb|EDX20106.1| response regulator receiver domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|254841446|gb|EET19882.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159813|gb|ADA79204.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332678759|gb|AEE87888.1| DNA-binding response regulator [Francisella cf. novicida Fx1]
          Length = 228

 Score =  217 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 12/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +G +     +G+ +   +  E  +    S   D+  ++  +  K    L
Sbjct: 3   ILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIK--TGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R IR    +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+ 
Sbjct: 61  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K  N     G              G + P+ ++E  +L  L+ N G+ V KTQ+  
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   D+ ++ N +E H+  LRKK+      + + + R +GY
Sbjct: 181 EVYST-DKEMDTNTLEVHMHNLRKKI---NIPNFIQTIRGVGY 219


>gi|321313923|ref|YP_004206210.1| two-component response regulator YcbM [Bacillus subtilis BSn5]
 gi|320020197|gb|ADV95183.1| two-component response regulator (YcbM) [Bacillus subtilis BSn5]
          Length = 230

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +      E    L      D+  ++  L       +
Sbjct: 4   ILLVEDDHSISEMVDHYLTKEGFGIVYAFDGEEGIRLFQQGSYDLVLLDIMLP--KLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  +IIR  S +P++ IS              G DD + KP    E+ ARV A  RR   
Sbjct: 62  DFLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N       + +  D       GE   L   E ++L    +N  K   K QI+
Sbjct: 122 YSAEELAVNKVIRIHQLAIDVDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++   +   ++N++  H+ +LR+K+ +       + +   +GY +
Sbjct: 182 RSVWNE-EYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 227


>gi|325679755|ref|ZP_08159329.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
 gi|324108570|gb|EGC02812.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
          Length = 224

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +G   E   + +  E ++   ++D   I   ++       
Sbjct: 4   ILIVDDEAKIRMIIKEYAEFEGY--ETAEAEDGMEAVEMVKKDDYDIIIMDIMMPRLDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+   ++P+I +S        L  F+ G+DD + KP   +E++AR+ A+  R K 
Sbjct: 62  SACKEIQKIKKIPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARIRAVLNRAKA 121

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S    +      + +    R+ ++ GE   +  +E  +L YL+ N    +++ ++   ++
Sbjct: 122 SQKTEDIIRYQGLEINFTAREVKIDGEKVSMTPKEYDLLFYLVRNMNIALSREKLLEEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G FD   ++  +++HI  LR  L      + + + R +GY  +
Sbjct: 182 G-FDFYGDDRTIDTHIKMLRNSLGPY--RNLIVTLRGMGYKFE 221


>gi|260576068|ref|ZP_05844062.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259021767|gb|EEW25069.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 225

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     D       ++G   +         +  +    DV  ++  +   G   L
Sbjct: 3   ILLIEDDPSAADYVARGLSENGHVCDILADGTDGLFQATRESYDVLVVDRMIP--GIDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +RA   + P++ ++    +   ++  ++G DD + KP    E++ARV A+ RR  
Sbjct: 61  SLVRALRAAGRKTPVLFLTALGGIDDRVEGLEAGGDDYLTKPFAFAELMARVNALARRPP 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V           + +    R+    G+   L  +E  +LE LM N G+ V +T +   ++
Sbjct: 121 VQEVKTLLRVADLELDLMRREARRAGQQIDLLPKEFTLLEVLMRNEGRVVTRTMLLERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F    + +VVE+HIS+LR K+        + + + +GYSI
Sbjct: 181 D-FHFDPKTSVVETHISRLRAKIDRPFAVALLHTVKNMGYSI 221


>gi|149908364|ref|ZP_01897027.1| DNA-binding response regulator BaeS [Moritella sp. PE36]
 gi|149808527|gb|EDM68462.1| DNA-binding response regulator BaeS [Moritella sp. PE36]
          Length = 226

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 86/221 (38%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +           G       N LE  +W       D+  ++  L  +    
Sbjct: 8   ILVVEDEPSLAIVLCEYLAQAGFQTHIIDNGLEVIDW-VKQKHPDLLILDLMLPNR--DG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R  SQVP++  +        L   + G DD + KP   RE++AR+  + RR  
Sbjct: 65  LDIYRELRTFSQVPVVMATARVDEIDRLLGLELGADDYICKPYSPREVVARIKNVLRRTV 124

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                +    + +               L   E R+L +   + G+   + Q+   IY  
Sbjct: 125 EVAASSPQHGLTINDKQMKATFDSNELTLTPAEFRLLSFFNHHPGQVFNRDQLMQEIY-A 183

Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
               V +  ++SHI  LRKKL++     + + S   +GY  
Sbjct: 184 DHRLVTDRTIDSHIKNLRKKLQDVAPDNEYIKSIYGVGYRF 224


>gi|24111908|ref|NP_706418.1| DNA-binding transcriptional activator CusR [Shigella flexneri 2a
           str. 301]
 gi|30062021|ref|NP_836192.1| DNA-binding transcriptional activator CusR [Shigella flexneri 2a
           str. 2457T]
 gi|24050711|gb|AAN42125.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|30040265|gb|AAP15998.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|281599865|gb|ADA72849.1| putative 2-component transcriptional regulator [Shigella flexneri
           2002017]
 gi|313646838|gb|EFS11295.1| transcriptional activator protein irlR [Shigella flexneri 2a str.
           2457T]
 gi|332761444|gb|EGJ91726.1| transcriptional activator protein irlR [Shigella flexneri 2747-71]
 gi|332763836|gb|EGJ94074.1| transcriptional activator protein irlR [Shigella flexneri K-671]
 gi|332768456|gb|EGJ98640.1| transcriptional activator protein copR [Shigella flexneri 2930-71]
 gi|333021888|gb|EGK41136.1| transcriptional activator protein irlR [Shigella flexneri K-304]
          Length = 227

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A+  +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + N ++  +  LR K+ N      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNAIDVAVKLLRGKIDNDFEPKLIQTVRGVGYMLEV 223


>gi|170720861|ref|YP_001748549.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169758864|gb|ACA72180.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 226

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A           + G + E     E  + L  S   D+  ++  L   G    
Sbjct: 3   LLIVEDQARTGQYLSQGLSEAGFATELVADGETGQHLALSGDHDLLILDVMLP--GRDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R      P++ ++   +++  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   +     +R+    R  E  G+   L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 SPSQETQLALADLRLDLFRRRAERAGQRIDLTAKEFALLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDPHRNKLIHTVRGMGYVLE 222


>gi|294501737|ref|YP_003565437.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|295707087|ref|YP_003600162.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294351674|gb|ADE72003.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294804746|gb|ADF41812.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 241

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +          +   ++     +      +SA+ D+  ++  L       +
Sbjct: 5   ILIVEDEAQIAKVLKIELEFEDYEVDVEYDGKAGLETATSAQYDLILLDVMLPS--LSGI 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119
           E+ R +R A    P+I ++   +    +   D G +D V KP    E+LARV +  R R 
Sbjct: 63  EVLRRLRKAEVFTPVILLTARNTTLDKVMGLDQGANDYVTKPFEIEELLARVRSCIRYRS 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +          + +  + R+     E   L  +E  ++ YL+ N+ K V + 
Sbjct: 123 LVEASGTKEAEAELLTISDLTINLETREVLRNNESITLTPKEYDLVVYLLTNKNKIVTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I + ++G ++   E NV++ +I  LRKK+        + + R +GY +
Sbjct: 183 GILTNVWG-YEYEGETNVIDVYIRHLRKKVDEGFSTSLIHTVRGVGYMM 230


>gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4]
 gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4]
          Length = 240

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +   ++         + R D   ++  +   G     
Sbjct: 16  LVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMP--GMDGFG 73

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           L + +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 74  LLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGK 133

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + R +   I +  D R+    G++  L   E  +L Y M N G  ++K +I   
Sbjct: 134 VSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 193

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 194 VWN-YDFGGEVGVVESYVSYLRRKV-DTGETPLIHTLRGVGYVM 235


>gi|254423774|ref|ZP_05037492.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196191263|gb|EDX86227.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 636

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +     +        ++     E      S+   D+  ++  L       + 
Sbjct: 4   LLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQ--LSGVH 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L  R+ R    VP++ ++     +  ++  ++G DD V KP    E+LAR+  + RR   
Sbjct: 62  LCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTPH 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G +++          G++  L  +E  +LE  + +  +  + T +   ++  
Sbjct: 122 ETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLW-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             E   E  V SH+ +LR+KL       D +++   LGY +
Sbjct: 181 SQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRL 221



 Score = 66.1 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 8/126 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A      + L       +    + +    L +    D+   +  +        
Sbjct: 511 IMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQ--INGF 568

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL R++R+H++   +P++ +S +         F  G DD + KP+H +    R   +  R
Sbjct: 569 ELARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATR---LLNR 625

Query: 119 LKVSNN 124
           L  + +
Sbjct: 626 LNQTAD 631


>gi|167565338|ref|ZP_02358254.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167572443|ref|ZP_02365317.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 220

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G       +G +++   + +       +    +  ++  L  K    L 
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTPYALLLLDLGLPDK--DGLA 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +   +R     +P+I I+   +L   +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VLAALRRRDDALPVIVITARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G +R+           E   L  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 122 RAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDTILTVRGVGYRI 216


>gi|313899159|ref|ZP_07832682.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956052|gb|EFR37697.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 233

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 17/233 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + ++ +D A + D         G  +L+  N     E LQ++   D++ I+  +      
Sbjct: 4   VILIAEDEASIADAIEIYLKSQGYQTLKAANGAIAWEQLQNNT-VDLAIIDVMMPV--MD 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            + L   IR   + P+I +S        +   + G DD V KP    E+LARV A  RR 
Sbjct: 61  GIALTMKIRELYEFPIIILSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVHAQLRRH 120

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     +   +R   G I +    ++  V GE   L   E RIL+  M + G+  +
Sbjct: 121 LRYQQLLEQKQEVEDRLLLGGIELHRKSKEVFVDGESRRLTPIEFRILQLFMEHPGQVFS 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              I+  ++   + AV    V  HI  LR+K+  N      +     +GY I+
Sbjct: 181 SDDIYEHVWN--ETAVNTETVMVHIRNLREKIEINPRAPRYIKVVWGVGYKIE 231


>gi|227889918|ref|ZP_04007723.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227849362|gb|EEJ59448.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 231

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      +    L    +  +  ++  L       +
Sbjct: 6   ILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLELFEKEKPTLILLDWMLPV--YDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S +P+I ++         +  D G+DD + KP    E+ AR+  I RRL+ 
Sbjct: 64  TVLRRIRKVSDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRRLER 123

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ++  E   +++         +GE   L  +E  +L  LM +  K  ++ ++   
Sbjct: 124 EKRQVVSSTLEFSVLKIDLVSHKFWCKGEEIYLTPKEYALLCELMNDPEKVKSRDELLDI 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D   + N V+ +I  LR KL      + + + R  GY +
Sbjct: 184 VWG-YDFVGQTNTVDVYIRALRNKLGKY--RNLIKTVRGYGYCL 224


>gi|119715834|ref|YP_922799.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536495|gb|ABL81112.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 226

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +     A    +G +++         W       DV  ++  L        E
Sbjct: 4   LVVEDEARLAASLKAGLEAEGFAVDVAADGGEALWYAEETSYDVILLDVMLPV--LNGYE 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +R      P++ ++        ++  D G DD V KP     +LAR+ ++ RR   
Sbjct: 62  VCRRLREREVWTPILMLTARDEELDEIEGLDQGADDYVTKPFSFDILLARIRSLVRRGAT 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G +R     +     G+   L  RE  ++ + M   G  + K +I   ++  
Sbjct: 122 ERPTILEVGDLRYDPARKAVSRAGQPIDLTSRELALMAFFMRRAGDVLTKLEILENVWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F    + N+VE ++ +LR+K+    G   +++ R  GY +
Sbjct: 181 FAFEGDPNIVEVYVGRLRRKVDKPFGCADLETFRGTGYRL 220


>gi|229173377|ref|ZP_04300921.1| Two-component response regulator vanRB [Bacillus cereus MM3]
 gi|228610071|gb|EEK67349.1| Two-component response regulator vanRB [Bacillus cereus MM3]
          Length = 214

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           ++   +         +    D+  ++  +        E+ 
Sbjct: 2   IEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVMMPN--LNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           ++IR+ S +P+I ++     +  +  FD G+DD + KP     ++ RV A+ RR   K  
Sbjct: 60  KMIRSQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           NN      +R+  D     V      L  +E  IL+ L  N  K + +  I   ++G +D
Sbjct: 120 NNHLVFKEVRIDVDAYRVYVTDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  ++++HI  LRKKL        + + + +GY ID
Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKID 213


>gi|23501491|ref|NP_697618.1| DNA-binding response regulator [Brucella suis 1330]
 gi|161618578|ref|YP_001592465.1| two component transcriptional regulator [Brucella canis ATCC 23365]
 gi|254703943|ref|ZP_05165771.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|260566808|ref|ZP_05837278.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str.
           40]
 gi|261754595|ref|ZP_05998304.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|23347396|gb|AAN29533.1| DNA-binding response regulator [Brucella suis 1330]
 gi|161335389|gb|ABX61694.1| two component transcriptional regulator, winged helix family
           [Brucella canis ATCC 23365]
 gi|260156326|gb|EEW91406.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str.
           40]
 gi|261744348|gb|EEY32274.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
          Length = 229

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTELYDAVVLDIGLPQ--MDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +  R  R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y 
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R +GY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGMGYRM 216


>gi|17232666|ref|NP_489214.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134312|dbj|BAB76873.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 601

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ +  +        +++     + +E    +       I   LI      +
Sbjct: 3   ILLVEDDELIGELLVKSLTSQHYTVDFAK--DGQEGWDFAELYTYDLILLDLILPKLDGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA  +Q P++ ++   +  T +   D+G DD V KP   +E+LAR+ A+ RR  
Sbjct: 61  SFCRQLRASGNQTPILLLTSQDTSITKVTGLDAGADDYVAKPFDFQELLARIRALLRRGG 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     E   +R+     +    G++  L  +E  +LE  + N  +  + + +   ++ 
Sbjct: 121 SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            F+E   E+ V SHI  LR+KL+      DP+D+   +GY +
Sbjct: 180 SFEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRL 221


>gi|319408250|emb|CBI81903.1| two-component response regulator [Bartonella schoenbuchensis R1]
          Length = 228

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G + +     +    L  +   DV  ++  L  +    L
Sbjct: 3   ILVIEDDRETGRYLEKAFLEVGYTADIACDGDTGYSLAETGNYDVMVVDRMLPHR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+LAR+  + RR  
Sbjct: 61  SIVSELRAKGNETPVLILSALGQVDDRVTGLRAGGDDYLTKPYAFLELLARIEVLQRRKS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       +  G    L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGGINIILQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDIPLLHTVRGAGYML 221


>gi|254520350|ref|ZP_05132406.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226914099|gb|EEH99300.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 91/221 (41%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         + + +   ++ E    L +     ++ ++  L   G    
Sbjct: 4   ILLVEDEESIRAFLKINLQRNNLQVIEASTGEEGLKLANIENPKIAVLDVMLP--GIDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R     + +I ++        +   + G DD + KP +  E++ R+ A+ RRL 
Sbjct: 62  KVCNKLRSEFPGMGIIMLTAKGQDMDKIMGLEYGADDYIVKPFNPLEVVLRIKALLRRLG 121

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + ++ E GP  +    +          +  +E  +++  + N  K   + ++   ++G
Sbjct: 122 DEDKDKLELGPFLIDLYSQKVLKDNIEIDVTPKEYLLMKIFLENPNKAFTRDELLDLVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             +   +  +++ +I +LR K+ +       +++   +GY 
Sbjct: 182 E-NYFGDAKIIDVNIRRLRAKIEDNASDPKYIETIWGIGYR 221


>gi|210633428|ref|ZP_03297776.1| hypothetical protein COLSTE_01689 [Collinsella stercoris DSM 13279]
 gi|210159152|gb|EEA90123.1| hypothetical protein COLSTE_01689 [Collinsella stercoris DSM 13279]
          Length = 229

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L++D  L+ D    L    G S++  ++ +   E  + S        I   +  +   
Sbjct: 5   ILLVEDDPLIVDSLTELLAGSGYSVDTADTQQRAIELAVDSGGAHPYQLILLDVTLRQGN 64

Query: 60  VLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              +   ++ A   VP+I ++       T+     G DD V KP   RE+LAR+AA  RR
Sbjct: 65  GFAVCAAVKEATPDVPVIFLTASDDEFNTVTGLTMGADDYVAKPFRPRELLARIAATIRR 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S      GPIR+ +D    E +G    L   E R+L     N GK + + +I  A++
Sbjct: 125 SQPSRRVVSLGPIRIDTDRAYVEREGAELTLSALEYRLLLLFATNPGKLITRDKIRDALW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
                 +EEN +  +I +LR K+  +    + + + R LGY 
Sbjct: 185 DSAGTYIEENTLSVYIKRLRDKIEGDPSRPELIQTVRGLGYK 226


>gi|170768541|ref|ZP_02902994.1| transcriptional regulatory protein CreB [Escherichia albertii
           TW07627]
 gi|170122645|gb|EDS91576.1| transcriptional regulatory protein CreB [Escherichia albertii
           TW07627]
          Length = 229

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G S++ F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFSVDVFERGLPVLDKARQQAPDVIILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLAIHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G   +               L R E  +L+ L+ + G+  ++ Q+   ++ 
Sbjct: 126 STPPPVLRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDCVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPELSPINTHRGMGYSL 226


>gi|168205523|ref|ZP_02631528.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170662911|gb|EDT15594.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 227

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++      F  +   +    S E         + D++ ++  L   G    
Sbjct: 3   ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLP--GMNGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    ++ +I ++        +     G DD V KP +  EI  RV A+ RRL+
Sbjct: 61  EVCQKLRESFPRMGIIILTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N        E    ++    +    +     +  +E  +++  M N GK   + ++ +
Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            ++G+ D   +  +V+ +I +LR K+         +++    GY 
Sbjct: 181 LVWGI-DFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYR 224


>gi|254284870|ref|ZP_04959836.1| transcriptional regulator [Vibrio cholerae AM-19226]
 gi|150424873|gb|EDN16650.1| transcriptional regulator [Vibrio cholerae AM-19226]
          Length = 224

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHV--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + IRA    V ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|153950414|ref|YP_001399859.1| DNA-binding response regulator CreB [Yersinia pseudotuberculosis IP
           31758]
 gi|152961909|gb|ABS49370.1| transcriptional regulatory protein CreB [Yersinia
           pseudotuberculosis IP 31758]
          Length = 232

 Score =  217 bits (555), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  I     +G +L  F+  E      SS    ++ ++  L       
Sbjct: 4   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPALAIVDVGLPD--ING 61

Query: 61  LELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +L R  + A   +P+I ++        +   + G DD + KP   RE+ ARV  I RRL
Sbjct: 62  FDLCRRMLAAAPDLPVIFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTILRRL 121

Query: 120 K------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +      V++   + G   +   G       ++  L R E  +L+ L+    +  ++ Q+
Sbjct: 122 QKSHLLAVASTSHQFGHFSLDEAGARVTYHQQILGLTRYEYLLLKTLLLAPERIFSRQQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++   +E+ ++  V++HI  LR KLR     D P+ + R LGYS+
Sbjct: 182 MDIVWAQAEES-QDRTVDTHIKTLRSKLRTVYAEDSPIRTHRGLGYSL 228


>gi|307152831|ref|YP_003888215.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
 gi|306983059|gb|ADN14940.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 633

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 97/217 (44%), Gaps = 5/217 (2%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D  L +        +   +++     +    L  +   D+  ++  +       + + +
Sbjct: 2   EDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPV--LDGISVCQ 59

Query: 66  IIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-N 123
            +R+   Q P++ ++   S    +   D+G DD + KP++   ++AR+ A+ RR   S +
Sbjct: 60  QLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKNASLS 119

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
           +  E G +++     +   + E   L  +E  +LE  + N  +   +  I   ++ + + 
Sbjct: 120 SVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWDIGES 179

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             EE  V +HI  LR+KL+N    DP+++   LGY +
Sbjct: 180 PGEE-TVSTHIKCLRQKLKNAGVSDPIETVYGLGYRL 215



 Score = 59.9 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---HSQVPLIGISD 80
           +++E        ++ +       + +   L       LEL +++R     + +P++ +S 
Sbjct: 535 LNIEVITCHNPNQFWEMLTTYHPNLLVLDLEMPQFNGLELCQVVRQDPTWNDLPILFLSI 594

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           Y   +     F +G DD ++K   H ++   +  I RRLK+S
Sbjct: 595 YTDEEMIQQMFAAGADDYISKQSDHTDL---INHIIRRLKLS 633



 Score = 53.8 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 1/102 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +          ++LE    L     +       +  ++       E   
Sbjct: 389 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 448

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
            L   + ++   +P+I  +   SL   +     G    ++KP
Sbjct: 449 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKP 490


>gi|256830427|ref|YP_003159155.1| winged helix family two component transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579603|gb|ACU90739.1| two component transcriptional regulator, winged helix family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 231

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+I+D   + +         G         +    L  S R D+  ++  L   G    
Sbjct: 5   IVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLP--GMSGT 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + ++   +   +P+I ++        +  F+ G DD V KP   RE++ R+  + RR
Sbjct: 63  DVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRR 122

Query: 119 LKVSNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +        +    +     V G    L   E  +    + N GK +++ Q+ S
Sbjct: 123 NVNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQLLS 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +G ++       V++H+ +LRKKL      D +++ R +GY +
Sbjct: 183 NAWG-YEFEGYSRTVDTHVRRLRKKLGPY--ADWLETVRGIGYRM 224


>gi|226227419|ref|YP_002761525.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090610|dbj|BAH39055.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 222

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +       +     +  N+    E +  S   D+  ++  L   G   L
Sbjct: 3   ILVIEDDPTVGEFVRRGLEEQRWQTDLCNNGLEGERMALSQPYDLVILDMRLP--GRNGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R+   + P++ ++   ++   ++   +G DD V KP    E+LAR  A+ RR +
Sbjct: 61  DVLRTLRSSGFERPVLVLTAQDAVDAKVETLRAGADDYVTKPFAFEELLARAEALLRRPR 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ +   G + +    R+    GE+  L  +E  +LEYLM + G+ +++T I    +G
Sbjct: 121 ALASPQLRVGDLELDQGTREVLRAGELIELTPKEFAVLEYLMRHAGRVMSRTLITEYAWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+V+  I+ LRKK+  +     + + R +GY I
Sbjct: 181 -YHFDPGTNIVDVVINHLRKKIDARFDKKLITTVRGVGYMI 220


>gi|146311299|ref|YP_001176373.1| DNA-binding transcriptional regulator PhoP [Enterobacter sp. 638]
 gi|145318175|gb|ABP60322.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 224

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQEMGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPD--EDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ RR   
Sbjct: 63  LIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARIQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNSGKVVSKDSLMLQLY-P 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQHPHDVITTVRGQGYLFE 222


>gi|333025275|ref|ZP_08453339.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332745127|gb|EGJ75568.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 265

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 95/231 (41%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G  +              +   D++ ++  +   G   + 
Sbjct: 40  LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVP--GMDGVS 97

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR    
Sbjct: 98  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 157

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     + ++     G + V ++G +    GE   L   E R+L    A  G  ++
Sbjct: 158 GGGARQAVEEEAASGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVLS 217

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 218 RDRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 263


>gi|325661085|ref|ZP_08149712.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472592|gb|EGC75803.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 233

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 91/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   +    + + +E      R D S I   L+      +
Sbjct: 6   ILLIEDDKEISEMLKNYLTVENYEV--ICAYDGQEACDYFDRTDFSMILLDLMIPKISGM 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR HS VPLI IS   S          G DD + KP    E+LAR+ A  RR   
Sbjct: 64  DVMQHIREHSVVPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRRRNQ 123

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +        R   G + +          G    L  +E  IL+ LM +  K   K QI+
Sbjct: 124 YDQGSEDIPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKEQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           + ++       +EN V  HIS+LR K+         + +   +GY +  N
Sbjct: 184 ALVW-KDTYLGDENAVNVHISRLRNKIEEDSRNPRYIITVWGIGYKLGEN 232


>gi|323694714|ref|ZP_08108874.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           symbiosum WAL-14673]
 gi|323501229|gb|EGB17131.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           symbiosum WAL-14673]
          Length = 232

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D A VK+                ++ E       S   DV  ++  L       
Sbjct: 5   LILVVEDDAAVKNLITTTLETHQYRFRTASTGETAVMEAVSHNPDVILLDLGLPD--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R IR+ S+ P+I +S        +D  D+G DD + KP    E+LAR+   +RRL 
Sbjct: 63  IDIIRKIRSWSKTPIIVLSARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTFRRLN 122

Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + + A         G +R+        + G+   L   E ++L  L  N GK +  T I
Sbjct: 123 DAGDSAAAPASVFTNGEMRLDYAAGTVTMSGQELHLTPIEYKLLCLLAKNVGKVLTHTYI 182

Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              I+G  +D  V    +   ++ LRKK+  +      + +   +GY +
Sbjct: 183 TKKIWGSAWDNDVAS--LRVFMATLRKKIEPDPSNPQYIQTHIGVGYRM 229


>gi|302554205|ref|ZP_07306547.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471823|gb|EFL34916.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 219

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 11/222 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   +          +G +++  +         S    D+  ++  L   G     +
Sbjct: 2   IVEDEKRLALSLARGLTAEGYAVDVVHDGREGLHQASEGTYDLVILDIMLP--GLNGYRV 59

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
              +RA   +VP++ ++         +  D+G DD + KP  +  ++AR+ A+ RR  V 
Sbjct: 60  CAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGVG 119

Query: 123 NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G ++V +  R   +  +   L  +E  +LE+L+   G+ V+K++I   ++ 
Sbjct: 120 AGASPVHVHGDLKVDTAARRVFLGDDEIALTAKEFSVLEHLVLRAGEVVSKSEILEHVWD 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F    + N+VE ++S LR+KLR  L    + + R  GY ++
Sbjct: 180 -FAYEGDPNIVEVYVSTLRRKLRAGL----IRTVRGAGYRLE 216


>gi|300813010|ref|ZP_07093393.1| putative DNA-binding response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300495980|gb|EFK31119.1| putative DNA-binding response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 225

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +++  +         + GF+  +       ++R D+  ++  L    E   
Sbjct: 4   IWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALENSRPDLVILDLMLPD--EDGS 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++   +R+ S    +P+I  S   +    +   DSG DD + KP    E+++RV A+ RR
Sbjct: 62  KILHRLRSTSATEDLPVIIASAKAAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRR 121

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   ++ E   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I
Sbjct: 122 TNRKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +       E   V+ H+  LR KL        +++ R +GY 
Sbjct: 182 WETG-FYGETRTVDVHVRTLRHKLGEAG--KHIETVRGVGYR 220


>gi|169334006|ref|ZP_02861199.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258723|gb|EDS72689.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
           17244]
          Length = 226

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 105/228 (46%), Gaps = 16/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58
            +++DD   + +       +   + EG++++E  + +++      ED   I   ++    
Sbjct: 4   ILIVDDEPKIAE-----LINKYATFEGYDTVEVNDGMKAIEICKVEDFDIIVMDIMMPEL 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
                 R IR     P+I +S        +  F+ G DD V KP   +E++ RV AI +R
Sbjct: 59  DGFSAVREIRKTKDTPVIMLSARGEEYDRIHGFEVGADDYVVKPFSPKELMMRVEAILKR 118

Query: 119 LKVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  +++ +        I +    R   + G+V  L  +E  +L +L+ N+G  +++ +I
Sbjct: 119 TQNKSDKEKENIINIDGINIDLAARILRIDGKVVSLTPKEYDLLTFLIENQGIALSREKI 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S ++G +D   ++  +++HI  LRK L      + + + R +GY  +
Sbjct: 179 ISTVWG-YDYYGDDRTLDTHIKLLRKNLGPY--SNRIVTLRGVGYRFE 223


>gi|238791834|ref|ZP_04635471.1| Two-component response regulator of virulence determinant [Yersinia
           intermedia ATCC 29909]
 gi|238728938|gb|EEQ20455.1| Two-component response regulator of virulence determinant [Yersinia
           intermedia ATCC 29909]
          Length = 223

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ I+  L   GE  L 
Sbjct: 4   LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLSLP--GEDGLS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR + 
Sbjct: 62  LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++   E  P ++    R+  V  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKKL  +   + + + R   Y  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHEGEVITTIRGQRYRFD 221


>gi|307324828|ref|ZP_07604034.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306889710|gb|EFN20690.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G ++E          L  S       ++  L G      
Sbjct: 3   ILVVEDDARLRELLTEGLEQEGFTIETAADGLSGLALARSGGYAAIVLDVMLPGC--SGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +R      P++ ++         D  D G DD + KP     ++ARV A+ RR  
Sbjct: 61  QLCSRLREKGDWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSFVVLIARVRALVRRGG 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +  E G +R+           E   L  +E  +LEYL    G+ V+K++I  +++ 
Sbjct: 121 LDRPDVLELGDLRLEPAALACARGKEEVTLTAKEFAVLEYLARRAGQVVSKSEIVQSVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+VE +I  LR+K+    G   + + R  GY +
Sbjct: 181 TA-YDGGANLVEVYIRSLRRKIDVPYGRQSIRTIRGAGYLL 220


>gi|171319841|ref|ZP_02908923.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|171094903|gb|EDT39933.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
          Length = 223

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPE--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR  +
Sbjct: 61  EVLRRLRAQKQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  +   + V    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NARDLLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|168178370|ref|ZP_02613034.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226948239|ref|YP_002803330.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670982|gb|EDT82956.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226841050|gb|ACO83716.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 240

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++IDD   +      +   +G     + +   E+  +   +   D+  ++  L     +
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQ-NIYYATNLEDGFKEFNKVEPDIVILDIMLPD--GE 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             EL + IRA S+VP++ +S        +  F  G DD + KP   +E+  RV A  RR 
Sbjct: 68  GYELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRY 127

Query: 120 KVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               N +E       GP  +     + + +G +  L  +E  ++ +   +  + ++K +I
Sbjct: 128 SYVENASEEKNILSFGPFELNISKGEFKKEGRLIELKPKELALIAFFAKHPNQIISKEKI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G  D    +N +  HI +LR+K+  +    + + + + LGY +
Sbjct: 188 CDNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKL 234


>gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 219

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +        G +G +++  +         +    D+  ++  L   G    
Sbjct: 3   LLIVEDERRLARSLALGLGAEGYAVDIAHDGTEGLRRATEGGYDLIVLDIMLP--GMNGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
            +   +RA     P++ ++         +  D+G DD + KP  +  + ARV A+  RR 
Sbjct: 61  RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G +R+ +  R   + GE  PL  +E  +LE+L+   G+ V+K  I   ++ 
Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F  + + N+VE ++S LR+KL    G   + + R  GY ++
Sbjct: 181 -FAYSGDPNIVEVYVSTLRRKL----GAGLIRTVRGAGYLLE 217


>gi|26990167|ref|NP_745592.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985105|gb|AAN69056.1|AE016538_5 transcriptional regulatory protein RstA, putative [Pseudomonas
           putida KT2440]
          Length = 279

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D + + +   +    +   ++     +         R D+  ++  L   G   L
Sbjct: 50  IFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLP--GIDGL 107

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R++R  SQ  P++ ++        +   + G DD V KP   R +LARV  + RR  
Sbjct: 108 QLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 167

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V+  R +      G +R+    R    +GE   L   E  +L  L  N G+ + + +I  
Sbjct: 168 VNEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQ 227

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY---SIDW 222
            + G+ +    +  V+  ISKLR+K  +  G    + +    GY    ++W
Sbjct: 228 QLRGI-EFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEW 277


>gi|74314832|ref|YP_313251.1| DNA-binding response regulator CreB [Shigella sonnei Ss046]
 gi|193065660|ref|ZP_03046726.1| transcriptional regulatory protein CreB [Escherichia coli E22]
 gi|218556934|ref|YP_002389848.1| DNA-binding response regulator CreB [Escherichia coli IAI1]
 gi|256020158|ref|ZP_05434023.1| DNA-binding response regulator CreB [Shigella sp. D9]
 gi|260847288|ref|YP_003225066.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O103:H2 str. 12009]
 gi|300905390|ref|ZP_07123159.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300923534|ref|ZP_07139569.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|301303503|ref|ZP_07209626.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|332281320|ref|ZP_08393733.1| catabolic regulation response regulator [Shigella sp. D9]
 gi|73858309|gb|AAZ91016.1| catabolic regulation response regulator [Shigella sonnei Ss046]
 gi|192926733|gb|EDV81361.1| transcriptional regulatory protein CreB [Escherichia coli E22]
 gi|218363703|emb|CAR01363.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli IAI1]
 gi|257762435|dbj|BAI33932.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O103:H2 str. 12009]
 gi|300402759|gb|EFJ86297.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300420208|gb|EFK03519.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300841230|gb|EFK68990.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|315255739|gb|EFU35707.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|320200483|gb|EFW75069.1| Two-component response regulator CreB [Escherichia coli EC4100B]
 gi|323166208|gb|EFZ51986.1| transcriptional regulatory protein creB [Shigella sonnei 53G]
 gi|323181940|gb|EFZ67352.1| transcriptional regulatory protein creB [Escherichia coli 1357]
 gi|324019813|gb|EGB89032.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|332103672|gb|EGJ07018.1| catabolic regulation response regulator [Shigella sp. D9]
          Length = 229

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 SSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|325300034|ref|YP_004259951.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
 gi|324319587|gb|ADY37478.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
          Length = 228

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 104/228 (45%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  ++  NS E    L    + ++  ++  +        
Sbjct: 6   ILVVDDEDDLCEILKFNLEMEGYKVDTANSAEEALKL-DLTQYNLLLLDVMM--GEISGF 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R+++A+     +P+I I+   +   T+  F+ G DD ++KP   RE++ RV A+ RR
Sbjct: 63  KMARMLKANKDTVNIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 122

Query: 119 L----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  +   +   + +    +   ++GE   L ++E  IL  L+ N G+  ++  I 
Sbjct: 123 TANLQRKESEELQYKGLVINVPQKKVTIEGEEISLTKKEFEILSLLLQNAGRVFSREDIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           S ++   +  V +  ++ +I++LRKK+        + ++   GY  + 
Sbjct: 183 SKVWN-DEVYVLDRTIDVNITRLRKKIGEYGKN--IVTRLGYGYCFEC 227


>gi|312960633|ref|ZP_07775139.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311285159|gb|EFQ63734.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 233

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + +   +    +G  +   +  +           D+  ++  L   G   L
Sbjct: 4   ILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNPPDLVILDLMLP--GLDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R++R  S  +P++ ++        +   + G DD V KP   R +LARV  + RR  
Sbjct: 62  QVCRLLRDDSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +V+N++   G + +    R    + +   L   E  +L  L  + G+ +++ QI  
Sbjct: 122 LSEPQVANDQIIMGNLCIDLSERSVSWREQAVELSSGEYNLLVVLARHAGEVLSRDQILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            + G+ +    +  V+  ISKLR+K  +  G    + +    GY
Sbjct: 182 RLRGI-EFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGY 224


>gi|309790025|ref|ZP_07684599.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308227880|gb|EFO81534.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 229

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +     +     G  +      E    L  + R D+  ++  L  +     
Sbjct: 4   ILVTDDDRQIVRLVSSYLEQAGYRVLTAYDGEATLRLARTERPDLLVLDLMLPDR--DGY 61

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R       +P+I ++        +   + G DD + KP + RE++ARV A+ RR
Sbjct: 62  SIVQTLRGDPHLGGMPIIMLTARVEDTDRIVGLELGADDYIGKPFNPREVVARVRAVLRR 121

Query: 119 LK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    R   G I +  D     + G    L   E  +L   M N G    + ++  
Sbjct: 122 GAGPPQPPQRLSYGAISLDLDAHRATIAGAPLELTPSEFDLLALFMRNPGHAFTRLELIE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              G +  A  E  V+SHI  LRKK+ R+      +++   +GY +
Sbjct: 182 QGLG-YAYAGMERTVDSHIKNLRKKIERDPQAAPLIETVYGVGYRL 226


>gi|229101412|ref|ZP_04232155.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681988|gb|EEL36122.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 230

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 84/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +    +S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCASSGEEAILHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  DTCKKIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 EHKQIQYHGILWDEAKHFASVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|182413226|ref|YP_001818292.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840440|gb|ACB74692.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 265

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         +   +     +      + + +  D   ++  L       L
Sbjct: 47  ILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPD--GDGL 104

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L R  RA     P++ +S   ++   +   + G DD + KP    E++ARV ++ RR  
Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V       GP+R+   GR     G    L  RE  +LE  + N  + + +T I   ++ 
Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                +E N+++ ++ +LR+KL        + + R  GY +
Sbjct: 225 AS-YDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264


>gi|145594981|ref|YP_001159278.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145304318|gb|ABP54900.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 334

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D +++         D G  +           + +    D+  ++  L       
Sbjct: 108 LILLVEDDSIITAALSRALTDAGHVVRAVGQAAEALRVLTGEPPDLVLLDLGLPD--IDG 165

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R+IR+ S+VP++ I+   S    +   +SG DD V KP     ILAR++A+ RR +
Sbjct: 166 TDTLRMIRSISEVPVVVITARRSETDIIHLLNSGADDYVTKPFSGEHILARISAVLRRYR 225

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +R        GP+ +    R   + G    L RRE  +L YL    G+ V++ ++ +
Sbjct: 226 SGTDREGPGAITVGPLVIGRKERRVTMHGNPLKLTRREYDVLTYLAERVGQVVSRRELMT 285

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLG 217
            ++       EE  ++ HIS LR+KL         + + R +G
Sbjct: 286 EVWRQA-RIGEEQTIDVHISWLRRKLGETAAKPRLLHTVRGVG 327


>gi|315304579|ref|ZP_07874825.1| regulatory protein VanR [Listeria ivanovii FSL F6-596]
 gi|313627057|gb|EFR95944.1| regulatory protein VanR [Listeria ivanovii FSL F6-596]
          Length = 231

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            ++ DD   + D       ++G ++  + + +  E   L    +  +  ++  +      
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTI--YLAYDGAEVWRLVQEKQPTLVILDIMMPE--MD 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R++R+     P++ +S        +    +G DD + KP +  E+  RV AI RR
Sbjct: 61  GLEVCRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++       +S ++   GPI V        V G+   L   E  IL  L +  G+  +  
Sbjct: 121 MQQMSQAEPISQDKVIIGPIVVDRALHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            IF  I+           V  HIS LR KLR+   G + + +   +GY ++
Sbjct: 181 YIFEKIWQEK-ALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKVE 230


>gi|194434141|ref|ZP_03066409.1| transcriptional regulatory protein CreB [Shigella dysenteriae 1012]
 gi|218708083|ref|YP_002415602.1| DNA-binding response regulator CreB [Escherichia coli UMN026]
 gi|256025318|ref|ZP_05439183.1| DNA-binding response regulator CreB [Escherichia sp. 4_1_40B]
 gi|293403071|ref|ZP_06647168.1| transcriptional regulatory protein creB [Escherichia coli FVEC1412]
 gi|298378597|ref|ZP_06988481.1| two-component system [Escherichia coli FVEC1302]
 gi|300896756|ref|ZP_07115262.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|301330244|ref|ZP_07222902.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301646920|ref|ZP_07246765.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307136599|ref|ZP_07495955.1| DNA-binding response regulator CreB [Escherichia coli H736]
 gi|331640443|ref|ZP_08341591.1| transcriptional regulatory protein CreB [Escherichia coli H736]
 gi|331661358|ref|ZP_08362282.1| transcriptional regulatory protein CreB [Escherichia coli TA143]
 gi|194417578|gb|EDX33679.1| transcriptional regulatory protein CreB [Shigella dysenteriae 1012]
 gi|218435180|emb|CAR16138.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli UMN026]
 gi|291429986|gb|EFF03000.1| transcriptional regulatory protein creB [Escherichia coli FVEC1412]
 gi|298280931|gb|EFI22432.1| two-component system [Escherichia coli FVEC1302]
 gi|300359412|gb|EFJ75282.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300843750|gb|EFK71510.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301074908|gb|EFK89714.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|320177680|gb|EFW52669.1| Two-component response regulator CreB [Shigella boydii ATCC 9905]
 gi|331040189|gb|EGI12396.1| transcriptional regulatory protein CreB [Escherichia coli H736]
 gi|331061273|gb|EGI33236.1| transcriptional regulatory protein CreB [Escherichia coli TA143]
 gi|332083394|gb|EGI88625.1| transcriptional regulatory protein creB [Shigella boydii 5216-82]
 gi|332098001|gb|EGJ02974.1| transcriptional regulatory protein creB [Shigella dysenteriae
           155-74]
          Length = 229

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|168182818|ref|ZP_02617482.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237794261|ref|YP_002861813.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673963|gb|EDT85924.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263864|gb|ACQ54897.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 240

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++IDD   +      +   +G     + +   E+ L+   +   D+  ++  L     +
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQ-NIYYATNLEDGLKEFNKVEPDILILDVMLPD--GE 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             EL + IRA S+VP++ +S        +  F  G DD + KP   +E+  RV A  RR 
Sbjct: 68  GYELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRY 127

Query: 120 KVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               N  E       GP  +     + + +G +  L  +E  ++ +   +  + ++K +I
Sbjct: 128 SYVENAIEEKNILSFGPFELNMSKGEFKKEGRLIELKPKELALIAFFAKHPNQIISKEKI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G  D    +N +  HI +LR+K+  +    + + + + LGY +
Sbjct: 188 CDNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKL 234


>gi|196042971|ref|ZP_03110210.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|229185367|ref|ZP_04312550.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|196026455|gb|EDX65123.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|228598100|gb|EEK55737.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 229

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 102/227 (44%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++        ++G  + +  +++E  + L+++   D+  ++  L       
Sbjct: 7   ILIVDDDIEIRKIISIYLRNEGYEIIDAPDAIEALDILRNTT-VDLIILDIMLP--KMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E    IR   Q+P+I +S        +    SG +D + KP +  E++AR+ +  RR +
Sbjct: 64  IEACLKIREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYR 123

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           V           E G ++V  + R   ++ E   L  +E  IL  L+ N+GK  +  +I+
Sbjct: 124 VYQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++        +N V  HI+K+R+K+         + +   +GY +
Sbjct: 184 EMVWEDL-FYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYRV 229


>gi|21224124|ref|NP_629903.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|256784797|ref|ZP_05523228.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289768685|ref|ZP_06528063.1| two-component system regulator [Streptomyces lividans TK24]
 gi|2687343|emb|CAA15884.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|289698884|gb|EFD66313.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 228

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE----DVSAIEAFLIGKG 57
            +L++D   V     A+    G  +    S   EE LQ+   E     V  ++  L  + 
Sbjct: 3   LLLVEDDNHVAAALSAILARHGFDVTHARS--GEEALQALVPEVDGFGVVLLDLGLPDQ- 59

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ R
Sbjct: 60  -DGYEVCGKIRKRTSTPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSR 118

Query: 118 R------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R         +      G +R+    R   V G V  L R+E  +L  L    G    + 
Sbjct: 119 RTAHEDATGSTETVVRLGAVRIELPTRQVSVDGSVVQLTRKEFDLLALLAQRPGVVFRRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI S ++    E      +E H++ LR KL        +++ R +GY +
Sbjct: 179 QIISEVWRTSWEGTG-RTLEVHVASLRSKLHMPA---LIETVRGVGYRL 223


>gi|333029328|ref|ZP_08457389.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332739925|gb|EGJ70407.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 222

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 104/218 (47%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   + +       ++G ++   ++ E    +      D+  ++  L     + +
Sbjct: 3   IAIIEDEIGITNFLKQGLEEEGYNVTIAHNGEDGLSMVLEKCPDLVLLDWMLPQ--MQGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R+IR A    P++ ++   ++  T++   +G +D + KP    E+LAR+   +R  +
Sbjct: 61  DVCRLIRQADQSTPILFLTAKDTINETIEGLQAGANDYIKKPFSFAELLARIEVHFREKE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V  N+ + G I +          GE  PL +RE  +LE+L+AN+G+  ++  I   I+ +
Sbjct: 121 VLKNQLKLGNILLNKSTYQVIKSGEEIPLTQREFELLEFLIANKGEVCSRQLIIEKIWNI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            D   +  V++  I+ +RKKL        + + R +GY
Sbjct: 181 -DFDYDTGVIDVFINAIRKKLSMDKDEGYIKTIRGVGY 217


>gi|256017749|ref|ZP_05431614.1| DNA-binding transcriptional regulator BaeR [Shigella sp. D9]
 gi|332278767|ref|ZP_08391180.1| DNA-binding response regulator in two-component system response
           regulatory system with BaeS [Shigella sp. D9]
 gi|332101119|gb|EGJ04465.1| DNA-binding response regulator in two-component system response
           regulatory system with BaeS [Shigella sp. D9]
          Length = 240

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GIDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|229196226|ref|ZP_04322974.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228587080|gb|EEK45150.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 226

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++     F  DG  +      +    L +    ++S +   ++        
Sbjct: 5   LIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMDGWS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR +S VP+I ++       TL  F+ G DD V KP     +LAR   +++     
Sbjct: 65  VCRRIRKNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRLFKDTNQQ 124

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      IR+    R   + G+       E  IL  LM ++ + +++ Q+ + I+G
Sbjct: 125 VQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLSREQLITNIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   ++  + +H+  +R KL  K     + +    GY  + 
Sbjct: 185 -YDYDGDDKTLTAHMRNVRLKLGEK--AKHIITVVRTGYKFEV 224


>gi|208779566|ref|ZP_03246911.1| two component response regulator [Francisella novicida FTG]
 gi|208744527|gb|EDZ90826.1| two component response regulator [Francisella novicida FTG]
          Length = 229

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +       F ++G+        +   +L ++   DV  I+  +       + 
Sbjct: 8   LVADDDKKIAQFIKNKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWMMPY--LDGIS 65

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L +I+R  +   P+I +S   S +  ++   SG DD + KP    E++ RV  +Y+R K 
Sbjct: 66  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 ++   G I +     +     E+  L +RE ++L  L+ ++ + V+KT I   +
Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE HIS+LR KL      DP+ + R  GY I
Sbjct: 186 WD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 227


>gi|206976925|ref|ZP_03237827.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206744891|gb|EDZ56296.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 223

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 KVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K             G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL +    + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGSSG--EYIKTIYGVGYKLDC 223


>gi|167755460|ref|ZP_02427587.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
 gi|237733688|ref|ZP_04564169.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167704399|gb|EDS18978.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
 gi|229383286|gb|EEO33377.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 230

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++   +  F   +           D++ ++  +        
Sbjct: 5   ILVVDDEQSIADLVELYLQNESYQVFKFYHGQEALDSLKKNHYDLAILDVMMPD--LDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L + IR     P+I ++   +    ++    G DD + KP +  E+ ARV    RR   
Sbjct: 63  SLLKKIREDYFFPVIMLTAKNNDMDKINGLTLGADDYLTKPFNPLELAARVKTQLRRYTR 122

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  V+    +   + + +D     +  +   L   E  IL YL + RG  V   ++
Sbjct: 123 YNTNEPAVNQQIYDFNGLMINNDNHKCTLYDQPLNLTPIEFSILWYLCSKRGSVVTSEEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F A++         N V +H+++LR+K+  N      V +   +GY+I+
Sbjct: 183 FEAVWQEK-YLDNNNTVMAHVARLREKMNENARKPKFVKTVWGVGYTIE 230


>gi|238563602|ref|ZP_00438600.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|251766703|ref|ZP_02264739.2| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254208757|ref|ZP_04915105.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|147750633|gb|EDK57702.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|238520363|gb|EEP83824.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|243064967|gb|EES47153.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 273

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 29  ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPR--MSGL 86

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 87  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 147 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 207 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 245


>gi|170720972|ref|YP_001748660.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758975|gb|ACA72291.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 222

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 98/220 (44%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  IA     G +++         +   S   D+  ++  L   G   L
Sbjct: 3   LLLVEDNVPLADELIAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLP--GLPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+    RA     P++ ++   S    ++   +G DD ++KP H  E+  R+ A+ RR K
Sbjct: 61  EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAK 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  R E   + +    +    +G    L   E R+L Y M +  + ++K+ +   +Y
Sbjct: 121 GLANQPRLEAAGLHLDESRQCVSREGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +   + NV+E H++ LR+KL    G   ++++R  GY
Sbjct: 181 DG-ETERDSNVLEVHVNHLRRKL----GRSVIETRRGQGY 215


>gi|293402553|ref|ZP_06646688.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304067|gb|EFE45321.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 220

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +    +   S    +    +   D+  ++  L   G    
Sbjct: 3   ILIIEDNDDINAMIADYLMKNKYQCDQAYSGTEGKMYFLNNHYDLIVMDLMLP--GLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR  S+VP+I ++   ++ + ++   +G DD + KP    E+LAR+    R+   
Sbjct: 61  TLLNEIRKQSKVPIIILTAKDTVDSKVNLLSAGADDYLCKPFDLEELLARIQVQLRKSDN 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+   +   + + +   D  ++     L + E  ILE LM N  +   K +I+   +   
Sbjct: 121 SSELLQFKELTLNNRAYDAFIKSYSLYLTKHEYYILELLMKNPKRVFTKQEIYEYAWNDS 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               ++  + +HIS +RKK++     + + +   +G+ +
Sbjct: 181 -YYGDDKTITTHISNIRKKIKQVASEEYIKTIWGIGFKM 218


>gi|262277654|ref|ZP_06055447.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
 gi|262224757|gb|EEY75216.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
          Length = 226

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   +          +G      ++ E           D+  ++  L       +++
Sbjct: 7   LVEDEQSIITLVEYNLKKEGFKFSVSSNGEEALHEIKEQEPDLVLLDWMLPD--LSGIDI 64

Query: 64  PRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R ++       +P+I ++     +  +   ++G DD + KP  H E++AR+ A+ RR K
Sbjct: 65  CRSLKKDKKFQDLPIIMLTAKGQEEDKVAALNAGADDYITKPFGHAELVARINALLRRSK 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+ ++A    + +    R          L   E R+L++ + N  +  ++ Q+ + I+
Sbjct: 125 PRVAEDKAVYEDLVIDRIQRKVFRNETQIDLGPTEYRMLDFFIKNPKRVYSRDQLLTNIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +  VE   V+ HI +LRK +      + + + R  GYS+D
Sbjct: 185 -PDNINVENRTVDVHIRRLRKAINLDGTKELIRTVRSAGYSLD 226


>gi|239941771|ref|ZP_04693708.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988231|ref|ZP_04708895.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445216|ref|ZP_06584606.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348163|gb|EFE75067.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  +  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRQ--DGPTALDAGLQGGIDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    +P++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSS 122

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPVPQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|229080389|ref|ZP_04212913.1| Response regulator [Bacillus cereus Rock4-2]
 gi|228702951|gb|EEL55413.1| Response regulator [Bacillus cereus Rock4-2]
          Length = 240

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD   + +   A+   +G     +     EE ++     + D+  ++  L      
Sbjct: 13  ILIVDDEKEILNLLEAVLKKEGFQ-HIYTCTTGEEGIRMCKQVQPDLIILDIMLPD--LD 69

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + IR  + VP+  +S        +     G DD + KP   +E+  ++ A +RR 
Sbjct: 70  GYSVCQQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRN 129

Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         + G I +            +  L  +E  IL +L+ N  +  +KT+++ A
Sbjct: 130 QYQEKARIMYQFGDITIDDAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKTRLYEA 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++G       +N++  HI  LR+K+ +       + + R LGY ++
Sbjct: 190 VWGET-YLGNDNIMMVHIRHLREKIEDNPSKPHYLVTVRGLGYKLN 234


>gi|300361402|ref|ZP_07057579.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|300354021|gb|EFJ69892.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 236

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 96/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +     F  +   ++          +  +  +    +   L    +  +
Sbjct: 4   ILMVEDDNSVAEMMKMFFSKEQWEVDIAKDGVEAVEMFKAHPDSYDIVTLDLNLPKKDGM 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA S  +P+I ++   S    +     G D+ V KP     ++AR+ A+YRR  
Sbjct: 64  EVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRSH 123

Query: 121 VSNN---------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAK 170
           +  +            T  +++  D R+      +   L  +E  +L  +     +  ++
Sbjct: 124 IEKDMHASNGLKYDVITKHLKISKDRREVRFDDNIVEGLTPKEFDLLYTMAQKPKQVFSR 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   ++G ++   EE  V++HI KLR+KL  K G   V +   +GY  D
Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232


>gi|77460076|ref|YP_349583.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77384079|gb|ABA75592.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Pseudomonas fluorescens
           Pf0-1]
          Length = 226

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+            + G + E        + L  S    +  ++  L   G    
Sbjct: 3   LLIVEDQPKTGQYLRQGLTEAGFNTELVADGTTGQQLALSGDYALLILDVMLP--GRNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +R+   + P++ ++   +++  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQAVRSAGLETPILFLTAKDTVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +    R  E  G+   L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 STPQETSLRLADLSLDLIRRRVERSGQRIDLTAKEFALLEMLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDDFPNKLIHTVRGMGYVLE 222


>gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 99/224 (44%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +    +   +   +    + +    +      D+  ++  L    E   
Sbjct: 4   ILVCDDERSILNMLKMVLEKEKYEVICAENGKDVIEVLKKQIPDLIILDVMLPD--ESGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ + I    +VP+I ++    +   +   + G DD V KP   RE++ARV A+ RR   
Sbjct: 62  DILKKIVPLYKVPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLRRIEE 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +K + N    G + V  D    + +G++  L  +E  +L+ L+  +G  + + ++   ++
Sbjct: 122 VKANKNFCTFGDLIVNFDQGIVKKRGKIINLTPKEFVLLKVLIDAKGNVLTREELLDKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           G +D   +  VV+ HI +LRKK+ +       + +    GY  D
Sbjct: 182 G-YDYYGDTRVVDIHILRLRKKIEDDTQSPRYIRTVYGFGYKFD 224


>gi|315038843|ref|YP_004032411.1| two-component system regulator [Lactobacillus amylovorus GRL 1112]
 gi|325957282|ref|YP_004292694.1| two-component system regulator [Lactobacillus acidophilus 30SC]
 gi|312276976|gb|ADQ59616.1| two-component system regulator [Lactobacillus amylovorus GRL 1112]
 gi|325333847|gb|ADZ07755.1| two-component system regulator [Lactobacillus acidophilus 30SC]
 gi|327184012|gb|AEA32459.1| two-component system regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+    + L  +  +D  AI   L+      L
Sbjct: 4   ILIIEDEKNLARFVELELQHENYETVVENNGR--KGLDDALSQDFDAILLDLMLPDLNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+K+
Sbjct: 62  EIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAK 170
                          +   + + +  R      G+   L +RE  +L  L+ N+   V++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 182 DQLLNKIWGP-ESNIETNVVEVYVRYLRNKIDVPGQPSYIKTVRGTGYMV 230


>gi|269957744|ref|YP_003327533.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269306425|gb|ACZ31975.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 246

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 98/241 (40%), Gaps = 25/241 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D    +D        +G   +   + LE  E  ++    D+  ++  L   G   
Sbjct: 4   ILVVEDEESYRDPLTYQLAREGFDVVAAADGLEAIEKFEADGGIDIVLLDLMLP--GLSG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------- 109
            E+ R +R  S VP+I ++   +    +   + G DD V KP   RE+L           
Sbjct: 62  TEVCRRLRLVSDVPVIMLTAKDTEIDKVVGLELGADDYVTKPYSFRELLARVRAVLRRRA 121

Query: 110 ---------ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
                    AR        +  +   + GP+R+  D     V G    LP +E  +LE L
Sbjct: 122 PVAVDPSGRARPDDGRHGWEDDDGVLDVGPVRMDVDRHTVTVDGAPVALPLKEFDLLELL 181

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYS 219
           + N G+ + + Q+   ++G  D   +   ++ H+ +LR K+    G    + + R LGY 
Sbjct: 182 LRNAGRVLTRGQLIDRVWGA-DYVGDTKTLDVHVKRLRAKIEPDPGTPRFLLTVRGLGYK 240

Query: 220 I 220
           +
Sbjct: 241 L 241


>gi|18309439|ref|NP_561373.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144115|dbj|BAB80163.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 234

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       + G ++  F      E L+   +E+V      ++        
Sbjct: 7   LVVEDEKEIAEAIEIYLKNQGYNV--FKGSNGLEGLEIVEKEEVHLAVVDIMMPKMDGAT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR    
Sbjct: 65  MVMKIRESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +   N    G + V SD ++  + G+V  +   E +IL+ L+ + G+  +  +
Sbjct: 125 LNMVKKDEKKTNSYSIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 185 IYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 232


>gi|323496680|ref|ZP_08101731.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
 gi|323318262|gb|EGA71222.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
          Length = 219

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +     +G + E         +  +S   +   ++  L       L
Sbjct: 3   ILVVEDEPRLGEQIVEALEQNGWTPELSTDGIDALYRATSENWEAIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P+I +S   +L   ++  ++G DD   KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVIQIGNLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+  K     + + R LGY ++
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKIAPK----VIKTVRGLGYQLN 217


>gi|302520129|ref|ZP_07272471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429024|gb|EFL00840.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 173

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 6/173 (3%)

Query: 54  IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           +  G    E+ R +R  S VP+I  +   S    +   + G DD V KP   RE++AR+ 
Sbjct: 1   MLPGLPGTEVCRQLRGRSNVPVIMGTAKDSEIEKVVGLEIGADDYVTKPFSSRELVARIR 60

Query: 114 AIYRRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           A+ RR     +V+    E GP+R+  D     V G    LP +E  +LE L+ N G+ + 
Sbjct: 61  AVLRRRGEPEEVTPTALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLT 120

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + Q+   ++G  D   +   ++ H+ +LR K+  +      + + R LGY  +
Sbjct: 121 RMQLIDRVWGA-DYVGDTKTLDVHVKRLRAKIEPDPSAPRYLVTVRGLGYKFE 172


>gi|188534102|ref|YP_001907899.1| DNA-binding transcriptional regulator PhoP [Erwinia tasmaniensis
           Et1/99]
 gi|188029144|emb|CAO97016.1| Two-component response regulator of virulence determinants [Erwinia
           tasmaniensis Et1/99]
          Length = 222

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L++        + G  ++     +  ++  +    D++ ++  L    E  + 
Sbjct: 4   LVVEDNPLLRHHLAVQLREMGHQVDAAEDAKEADYFLNEHTPDITLVDLGLPD--EDGMT 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R    + P++ ++     Q  ++  ++G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRTQEVRQPILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMRRNCG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P ++    R+  +   +  L   E  ILE L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIITLQPFQIDLSRREVTIHERLLKLTAFEYTILETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R LGY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAEYAQEVITTVRGLGYRFD 221


>gi|159035892|ref|YP_001535145.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914727|gb|ABV96154.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 237

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 101/225 (44%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++    A        +    S +    L +    D+  ++  L        +
Sbjct: 9   LVVDDEDNIRALLSATLRLIEFDVRTAASGQEALALAAEFDPDLVVLDVMLPD--LDGFQ 66

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     VP++ ++   +++  +    +G DD V+KP    E++ R+ AI RR +V
Sbjct: 67  VAQRLRDVRVGVPVLFLTARSAVEDRISGLTAGADDYVSKPFSLEEVVLRIRAILRRSQV 126

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       +++  D  +      V  L   E ++L YLM N G+ V+K QI  
Sbjct: 127 EPYPGADSGVLRYADLQLDEDAHEVRRADRVIDLSPTEFKLLRYLMVNAGRVVSKAQILD 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   +  +VES++  LRKK+ ++     + + R +GY++
Sbjct: 187 RVWN-YDFGGDGRIVESYVYYLRKKVDSR-APALIHTIRGVGYTL 229


>gi|75760136|ref|ZP_00740196.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218900181|ref|YP_002448592.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|74492373|gb|EAO55529.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218540655|gb|ACK93049.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 221

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           +++   +      L      D+  ++  L        
Sbjct: 4   ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPD--IDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR   
Sbjct: 62  SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----GITYIKTVKGIGYKIE 220


>gi|226358137|ref|YP_002787876.1| response regulator, OmpR; phosphate regulon transcriptional
           regulatory protein phoB [Deinococcus deserti VCD115]
 gi|226319780|gb|ACO47774.1| putative response regulator, OmpR; putative phosphate regulon
           transcriptional regulatory protein phoB [Deinococcus
           deserti VCD115]
          Length = 223

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 8/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A  G +G  +    + + +E      R DV+ ++  L G    VL 
Sbjct: 5   LIVDDDPAILEILRAYLGAEGHEV--LEAQDGQEARALLPRADVAVMDWMLPGAAGPVL- 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R  RA    +P++ ++     +  L   + GVDD V KP   REI+ARV A+ RR+ V
Sbjct: 62  -AREARAAGLDLPILMLTARGEEEDKLHGLEEGVDDYVVKPFSPREIVARVRALLRRVGV 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +   +  + +    R   V G    L R E  +L  L  + G    + ++   ++G  
Sbjct: 121 HQD-VRSDSLTMDLKRRTVMVDGLPVELSRLEFDLLAALALHPGLAWTRERLLERLWGP- 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           D    E VV+ HI+ LRKKL +       +++ R +GY  
Sbjct: 179 DFPGTERVVDVHITALRKKLGDDPERPRYIETVRGVGYRF 218


>gi|255305157|ref|ZP_05349329.1| DNA-binding response regulator [Clostridium difficile ATCC 43255]
          Length = 228

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 92/226 (40%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G S++   ++E    +      D+  ++  L        
Sbjct: 4   ILLVEDDLSLIYGLEYSIQKNGFSVDVARTVEEALQIYKEKNYDLLLLDVSLPD--GDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S VP+I ++        +   D G DD + KP    E+++R+ A+ RR   
Sbjct: 62  DICKRVREASNVPIIFLTASDEEVNVVMGLDMGGDDYITKPFKLNELISRIKALLRRYNF 121

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++      ++  I V               L   E ++L  LM N+   + +  I   ++
Sbjct: 122 TSENVTELKSNNITVKLLENRVFKNEIELELTTAEYKLLCLLMKNKNIVLTRKNILDKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSIDWN 223
                 V++N +  ++ +LR K+ +      +  + R +GY   WN
Sbjct: 182 DGNGSFVDDNTLSVYVRRLRNKIEDNPENPKILLTVRRMGYK--WN 225


>gi|210610549|ref|ZP_03288475.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787]
 gi|210152408|gb|EEA83414.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787]
          Length = 225

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            +++DD   + D   + F       +   +   +E L+  A + D+  ++  +   G   
Sbjct: 7   LLIVDDERGIVDMIQSYFQ---TQYDILTAYSGQEALKKVACKPDLILLDINMP--GMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR H   P++ ++        +  F +G DD + KP    E+ AR+AA  RR +
Sbjct: 62  LTVCQQIREHIACPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHLRREQ 121

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N +     G + +    R   +     PL +RE  I+E L  N G+   + +I+  +
Sbjct: 122 RRQNNSAVRFFGELILDYSARTVTINNLNIPLSKREFEIVELLSLNAGQVFDRERIYELV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +GL D     + +  HI K+R K       + +++    GY   WN
Sbjct: 182 WGL-DGDGNSDTIMEHIRKIRAKFAAHTLHNYIETVWGCGYR--WN 224


>gi|170077923|ref|YP_001734561.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885592|gb|ACA99305.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 249

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 89/230 (38%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + IR     + +P++ ++     Q  +D F++G DD + KP    E+L RV A+ RR
Sbjct: 62  TVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP+ +  +  +     +   L   E  +L  L+   G+ ++ ++
Sbjct: 122 SDRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTHLEFELLHCLLQRHGQTISPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D + +   +  H+  LR KL         + +    GY ++
Sbjct: 182 ILKEVWG-YDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLE 230


>gi|56420909|ref|YP_148227.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380751|dbj|BAD76659.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 99/222 (44%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G       + + EE L   ++  V A+   ++   +    
Sbjct: 7   LIVDDEEEMRLLVGMYLENAGFRC--LEAGDGEEALVLLSQHPVDAVLLDVMMPKQDGFA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +   IR  S VP++ ++        +     G DD + KP    E++AR+ A+ RR++  
Sbjct: 65  VCARIREQSDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ R + G + +   GR   V GE   L  +E  +L +L  +RG+  ++  +   ++G
Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGEAVKLTLKEFELLLFLAKHRGQVFSRDDLLVKVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D       V++H+  LR KL++      + +   +GY  +
Sbjct: 185 -YDYTGNARTVDTHVKTLRMKLKDA--ARHIQTVWGIGYKFE 223


>gi|293375811|ref|ZP_06622081.1| putative subtilin biosynthesis regulatory protein SpaR
           [Turicibacter sanguinis PC909]
 gi|325840818|ref|ZP_08167182.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp.
           HGF1]
 gi|292645588|gb|EFF63628.1| putative subtilin biosynthesis regulatory protein SpaR
           [Turicibacter sanguinis PC909]
 gi|325490188|gb|EGC92525.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp.
           HGF1]
          Length = 226

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       D+G  + +  NS E    L+     D+  ++  +   G+  
Sbjct: 5   ILVVDDDLEILEMLYDALNDEGYLVYKASNSFEARSQLKV--NPDLMILDVMMP--GQDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  + IR+    P+I ++   S    +  F  G DD + KP   RE+ ARVAA  RR +
Sbjct: 61  FEFCKEIRSVVSCPIIFLTAKVSESDLIQGFAIGGDDYLTKPFSLRELRARVAAHLRRNE 120

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++R +       +++    R      E  PL +RE  I+E L  N+ +  +K QI+  
Sbjct: 121 RQSSREQSFLIFQHLKINLQSRTVLYFDECVPLTKREYEIVELLALNKNQVFSKEQIYEL 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           ++GL D   +   V  H+ K+R K +  +  F+ + +   +GY  D 
Sbjct: 181 VWGL-DAEGDCATVAEHVKKVRSKFQTIQTDFNYLKTVWGVGYKWDV 226


>gi|260587106|ref|ZP_05853019.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
 gi|260542596|gb|EEX23165.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
          Length = 234

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  L++D   +++  +      G+  EGF               D+  ++  L    E  
Sbjct: 9   MIYLVEDDESIRELLVYTLNGQGLVAEGFAYPSDFWHAMEKKIPDLVLLDIMLPE--EDG 66

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ + +R       +P+  ++   S    +   D G DD + KP    E+++RV A+ R
Sbjct: 67  LEILQKLRKKKETKNIPIAMLTAKGSEYDVVKGLDGGADDYIPKPFRMMELVSRVKALLR 126

Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R      + +     G + V       +V+GE   L  +E  +L   ++N G   ++ Q+
Sbjct: 127 RGGQEQPQDDEEYVLGELYVSKKRHLVKVKGEEVTLTMKEFELLLLFLSNPGIVFSRAQL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +    E   V+ HI  LR+KL+       +++ R +GY +
Sbjct: 187 LDKIWG-YQFDGESRTVDVHIRTLRQKLKEAG--RYIETVRGIGYKV 230


>gi|77404656|ref|YP_345230.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77390306|gb|ABA81489.1| two component transcriptional regulator, winged-helix family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 219

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ +       + G +++    L   +   + A  D++ ++  L       +
Sbjct: 3   ILLIEDDEVLGNAVADHVAEAGHTVDRAKCLSEADDSLAVATYDLALLDLMLPD--GLGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R  RA     P+I ++    +   +D  ++G DD + KP    E+ AR+ ++ RR  
Sbjct: 61  PFLRKRRARGDSTPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYG 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N     G   V    R    +G   PL  RE  +LE  +A   + ++K Q+   ++ 
Sbjct: 121 GNPNPVVRLGAFEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F+  +E N +E ++S+LR+KL +      +++ R LGY +
Sbjct: 180 SFEAEIESNAIEVYVSRLRRKLDHS----VIETVRGLGYRL 216


>gi|71908789|ref|YP_286376.1| DNA-binding response regulator CreB [Dechloromonas aromatica RCB]
 gi|71848410|gb|AAZ47906.1| two component transcriptional regulator, winged helix family
           [Dechloromonas aromatica RCB]
          Length = 226

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG + E          L ++   D+  ++  L        
Sbjct: 3   ILIVDDEPAISETLAYALRSDGFTTESCTLGAQALTLLAAGGHDLVVLDVGLPD--MSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R +S VP++ ++        +   + G DD V KP   RE+++R+ AI RRL  
Sbjct: 61  DVCRALRRYSDVPVLFLTARSDEVDRIVGLELGGDDYVAKPFSPREVVSRIRAILRRLNP 120

Query: 122 SNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               A   P       V  DG      G    L R E  +L  L+   G+ +++TQI  +
Sbjct: 121 EPRLAAAPPPTPSRFAVDRDGLRIAYHGHWLNLTRYEYLLLALLLERPGRILSRTQIMES 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++    E++E   V++HI  LR KLR  +   D + + R LGYSI
Sbjct: 181 VWQDGGESLE-RTVDTHIKTLRGKLRGLRPDEDVIVTHRGLGYSI 224


>gi|240144544|ref|ZP_04743145.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257203433|gb|EEV01718.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 235

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 96/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++DG          ++  + + +  E L+    +++      ++      +
Sbjct: 6   ILIVEDDKEIRDGIEIFLKSQNYNV--YKAADGVEGLEIIESKEIHLAIVDIMMPRMDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R H   P+I +S        +   + G DD V KP    E++ARV +  RR   
Sbjct: 64  TMTLKLREHHDFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRRYTK 123

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            NNR +           G I +  D  +  V G+   +   E +IL  LM N G+  +  
Sbjct: 124 FNNRGQNKKENDRVHVIGGIELNEDTVEVFVDGKPVKMTPIEFKILALLMKNPGRVYSAD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +I+  ++   ++A+  + +  H+  +R K+  N      +     +GY ++
Sbjct: 184 EIYERVWN--EKAINTDTIMVHVRNIRDKIEINPREPKYLKVVWGVGYKME 232


>gi|224024107|ref|ZP_03642473.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM
           18228]
 gi|224017329|gb|EEF75341.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM
           18228]
          Length = 228

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V     A   ++G   + + + +    L+   +     + + +I       
Sbjct: 4   ILIIEDEERVAGLLKAGLEENGY--QTWVAYDGAMGLRLFKQHTFQLVISDVILPKMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL + IR  +  VP++ ++   S    L+ FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELCKEIRKINPSVPILMLTALGSTDDKLEGFDAGADDYMVKPFDFRELNARIKVLLKRNT 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +     +R+     +         L  +E  +L Y+  +  + +++ +I   
Sbjct: 122 EQTAPEPEQLTYANLRIDLRQHEVFRGQTPVRLSPKEYNLLVYMTQHAERVISRMEIAEN 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           ++         N ++ +I+ LRKK+        + +K  +G
Sbjct: 182 VWNTH-FDTGTNFIDVYINYLRKKIDRDFEPKLIHTKPGVG 221


>gi|220908317|ref|YP_002483628.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219864928|gb|ACL45267.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 224

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +  D    ++     E      ++   D+  ++  L       +
Sbjct: 3   ILVVEDDLQLAEMLAEVLSDHNYIVDLAEDGEKAWDYVNTLEYDLVILDVTLPR--LDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              +  R   +  P++ ++   +L   +   D+G DD + KP    E+LARV A+ RR  
Sbjct: 61  GFCQRWRGKGEATPVLMLTARDTLADKVTGLDAGADDYMVKPFELPELLARVRAMLRRSG 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S       G + +     +         L  +E  +LE L++N  + +++T I   I+ 
Sbjct: 121 ASVALNLSWGRLHLNPSTYEVTFDNRPLSLTPKEYALLELLVSNGRRVLSRTGIIERIWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           L D   EE  V+SHI  LR KLR     D  +++   LGY +
Sbjct: 181 LEDPPSEE-TVKSHIKGLRAKLREAGAPDNFIETVHGLGYRL 221


>gi|315446747|ref|YP_004079626.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
 gi|315265050|gb|ADU01792.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
          Length = 250

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +   +    +      +      DV  ++  L       LE
Sbjct: 20  LVVDDELPLAEVVASYLEREQFEVVVAANGVDAIAVARDLDPDVVILDIGLPS--IDGLE 77

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD + KP   RE++AR+ A+ RR +V 
Sbjct: 78  VCRQLRTFSDAYIVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRVL 137

Query: 123 NNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +               GP+ +    R+  + GE   L R E  ILE L    G  +++ 
Sbjct: 138 QSATATAEIALAPPRRFGPLSINVAAREVSIDGEQILLTRTEFDILEALSGRPGNVLSRR 197

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  LR+KL  +      + + R +GY +
Sbjct: 198 QLLEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGYRM 246


>gi|256822630|ref|YP_003146593.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256796169|gb|ACV26825.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 224

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L++D   +++  ++        +E   + E   +L      D+   +  L    G  V
Sbjct: 3   LLLVEDDDALREQLVSALKAQNYVVEEAPNGEEALYLAREYEFDLGIFDLGLPDISGMDV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R      Q P++ ++     Q  +D   +G DD + KP    E+LAR+ A+ RR  
Sbjct: 63  ITSLRD--EDIQFPVLILTARGHWQDKVDGLAAGADDYLVKPFQTEELLARINALLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      GPI + S  ++ +V GEV  L   E ++LEYLM N  K V+KT++   +Y 
Sbjct: 121 GYAKPEIVKGPISLNSLKQEVKVNGEVMDLTAYEYKVLEYLMLNPDKVVSKTELTEHLYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  + +LRKK+       P+D+ R  GY +
Sbjct: 181 Q-DYDRDSNVLEVFVGRLRKKIDPDGTIQPIDTLRGRGYRL 220


>gi|226951189|ref|ZP_03821653.1| heavy metal response regulator [Acinetobacter sp. ATCC 27244]
 gi|226838068|gb|EEH70451.1| heavy metal response regulator [Acinetobacter sp. ATCC 27244]
          Length = 235

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D       + G   +        +    S   D+  ++  L        
Sbjct: 11  ILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLSGKHQALSEEYDLIILDVMLP--KLDGW 68

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   IR     +P++ +S    ++  +   D G DD + KP    E+LAR+ ++ RR  
Sbjct: 69  NIIYDIRKSGKTMPILFLSARDQIEDRVKGLDLGADDYLVKPFAFAELLARIKSLLRRGQ 128

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  +N      + +    R     G+   L  +E  ++E  M  RG+ + +  I S I+
Sbjct: 129 QKEDSNLITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 189 DM-NFDSDTNVVEVAIKRLRSKIDSNFSPKLIQNIRGMGYVLEV 231


>gi|152996638|ref|YP_001341473.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837562|gb|ABR71538.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 232

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD A + D     F  +G  +    +      L ++   D+  ++  +        
Sbjct: 4   LLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPE--LDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP+I ++        +   + G DD ++KP + RE+LAR+ AI RR   
Sbjct: 62  ETLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQ 121

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +    R   ++GE+  L   E  +LE ++   G+ + K ++   
Sbjct: 122 EREDDPTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQELSEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             G      +   ++ HIS LRKK+ N    DP + + R +GY  
Sbjct: 182 ALGRKLTMYD-RSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIF 225


>gi|89054505|ref|YP_509956.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864054|gb|ABD54931.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 239

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   +  G +G  +   ++ E    LQ     +   ++  L   G   L
Sbjct: 5   ILLVEDDTRLAEMVASYLGGNGFDVSRVDTGEKALGLQGRQSFEAMILDLNLP--GIDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++A S +P+I ++        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 63  EVCRHVKAQSALPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAVMRRGQT 122

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S    +   + G +++        V G    L   + +IL  L    G+ +++  +  A+
Sbjct: 123 SPHAGSTPLQFGRLQIDPGAMVARVDGRPCDLTTHQFQILLVLARAAGRVLSRDALMDAL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            G   EA +   ++ H+S++R ++ +       + + R  GY  
Sbjct: 183 RGEALEAFD-RSIDVHVSRIRAEIEDDPKHPRRIITVRGAGYVF 225


>gi|194336760|ref|YP_002018554.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309237|gb|ACF43937.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 236

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G       + E      S    D+  ++  L   G   
Sbjct: 5   LILVVEDDPNLAKLLEYNLNRAGYKSHLSGTAEDALEQLSRKSFDLVLLDVMLP--GMDG 62

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            EL RIIR H     +P+I ++        +  F+ G+DD V KP   RE+  R+ AI +
Sbjct: 63  FELCRIIRQHQLYKDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAILK 122

Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +    + E     G + +        + G+   +   E ++L  L+  +G+  ++ ++
Sbjct: 123 RDRRQGGKIEELLKAGDLEIDLVRHIVTLDGKELVVTLMEFKLLVALLKRKGEAQSRERL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S ++ + D+++    +++HI+++R+KL        + + R LGY  +
Sbjct: 183 LSDVWDV-DKSINTRTIDTHITRIREKLGETG--RMIKTVRGLGYKFE 227


>gi|300853956|ref|YP_003778940.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434071|gb|ADK13838.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 232

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G      D+G  ++  + +   +    S   D+  ++  L        
Sbjct: 4   ILLLEDDEALALGIDFTLQDEGYEVKRCSCVSEAKKTFDSETFDIVILDVMLPD--GSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  SQVP+I ++        +   D G DD + KP   +E ++R+ AI RR + 
Sbjct: 62  DVCKYIRKRSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFISRIKAILRRTEK 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +N    +  ++  I + +   +    G    L  +E ++L   M N  + + + +I   +
Sbjct: 122 NNSDKSDILKSEKIVLNTTKLEAYRNGCDMSLSMQEYKLLLLFMTNPKRAMNREEILDKL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
                +  + N +  +I ++R+K+ +       + +KR  GY  +W+
Sbjct: 182 SDGSGDYFDTNTLSVYIKRIREKIEDDSSNPKYIKTKRGFGY--EWD 226


>gi|311103714|ref|YP_003976567.1| transcriptional activator protein IrlR 1 [Achromobacter
           xylosoxidans A8]
 gi|310758403|gb|ADP13852.1| transcriptional activator protein IrlR 1 [Achromobacter
           xylosoxidans A8]
          Length = 229

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       +    ++          L      D+  ++  L   G    
Sbjct: 3   ILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGVYDLIVLDVMLP--GVDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P++ ++   +++  +   + G DD + KP    E+LARV A+ RR + 
Sbjct: 61  GVLAAVREQKDTPILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGRS 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +    R  +  G    L  +E  +L  L+  +G+ +++T +   ++ +
Sbjct: 121 QEPTLLRLADLELDLARRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NV++  + +LR KL +      + + R +GY ++
Sbjct: 181 -NFDSDTNVIDVAVRRLRSKLDDPYDTKLLHTVRGMGYVLE 220


>gi|16760106|ref|NP_455723.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142123|ref|NP_805465.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213052791|ref|ZP_03345669.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213428093|ref|ZP_03360843.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|73621401|sp|Q8Z7H2|PHOP_SALTI RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|25300977|pir||AH0646 transcription regulatory protein PhoP, regulator of virulence
           determinants STY1271 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16502400|emb|CAD08355.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137752|gb|AAO69314.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 224

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPD--EDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 63  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGYLFE 222


>gi|163942751|ref|YP_001647635.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864948|gb|ABY46007.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 101/224 (45%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++           +++   +      L      D+  ++  L        
Sbjct: 4   ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPD--IDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR   
Sbjct: 62  SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +  V+++HI  LRKKL        + + + +GY I+
Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKLE----IPYIKTVKGIGYKIE 220


>gi|307129681|ref|YP_003881697.1| putative two-component system response regulator [Dickeya dadantii
           3937]
 gi|306527210|gb|ADM97140.1| Putative two-component system response regulator [Dickeya dadantii
           3937]
          Length = 226

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A +          +G S      +  +E +  +  +  +A+   ++      +
Sbjct: 3   ILLVDDDAELGHMLCEYLTAEGFSTS--QVMTGKEGVDGAMSDQYTAMILDIMLPDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R +  +P+I ++        +   + G DD V KP + RE++AR+ A+ RR + 
Sbjct: 61  DVLRQVRRNRSIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYED 120

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              ++E       G + +    R  E +G+ F L   E  +LE LM +  + V K ++  
Sbjct: 121 KAEKSEDTGTLNYGELAICPSTRSSEWRGKAFDLTASEFNLLELLMRSSERVVTKDELSE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              G   EA +   V+ HIS +R+KL    G +  +++ R +GY I
Sbjct: 181 KCLGRRREAYD-RSVDVHISNIRQKLAALDGCNLTIETVRSVGYRI 225


>gi|258651192|ref|YP_003200348.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258554417|gb|ACV77359.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 252

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 95/231 (41%), Gaps = 18/231 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + V+++D +++ D         G  +    + +       + R     ++  L       
Sbjct: 17  LVVVVEDESVIADVIRRYLTAAGFGVRWCRTGQEGLAAVRTDRPTAVVLDIGLPD--MDG 74

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L+L R +R      P++ ++        +   + G DD + KP + RE++AR+ A+ RR 
Sbjct: 75  LDLCRRLREAGDWTPVLFVTARDEDVDRILGLELGGDDYLVKPFNPRELVARLRAVLRRT 134

Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQ---GE----VFPLPRRERRILEYLMANRGKRV 168
                      + G +R+    R   V+   GE       L   E  +L +L  + G+  
Sbjct: 135 GGPAAAGGTTLQVGRVRIDPGRRRVWVEPGPGEPAPRPVDLTATEFDLLVHLARHPGRVF 194

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +  + S+++G +  A     V+ H++ LR KL       P+ + R +GYS
Sbjct: 195 ERAGLLSSVWG-YASAAGARTVDVHVAALRAKLGTA---SPIRTVRGVGYS 241


>gi|50843487|ref|YP_056714.1| putative two-component system response regulator [Propionibacterium
           acnes KPA171202]
 gi|50841089|gb|AAT83756.1| putative two-component system response regulator [Propionibacterium
           acnes KPA171202]
 gi|315107835|gb|EFT79811.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 243

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +   NS         + R DV  ++  L       LE
Sbjct: 21  LVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDF--DGLE 78

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR     V  + ++   +    +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 79  VMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSGA 138

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +       G + +  + R+    GE   L   E  +L Y M N  + ++K QI   +
Sbjct: 139 TEPKPDSMLTVGDLTLDENSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDRV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ ++     + + R  GY +
Sbjct: 199 WN-YDFRGQANVVELYISYLRKKI-DRGHKPMIHTMRGAGYVL 239


>gi|158318242|ref|YP_001510750.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113647|gb|ABW15844.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 270

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 94/226 (41%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D         G  +    + +      ++ + D+  ++  L        E
Sbjct: 24  LVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDA--DGFE 81

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA   +V ++ ++   + +  +     G DD + KP    E++ARV A+ RR + 
Sbjct: 82  VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  D        +   L   E  +L Y + N  + +++ QI 
Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +A++   D   E  VV+ ++S LR+KL    G   + ++R  GY++
Sbjct: 202 AAVWDR-DFDGEPTVVDQYVSYLRRKLGQH-GPPLIHTQRGFGYAL 245


>gi|296187341|ref|ZP_06855736.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|296047863|gb|EFG87302.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       D+G  L           L       +  ++  L   G    
Sbjct: 11  ILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLP--GINGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   I+      +I ++    +   +   D G DD + KP   +E+LAR+ A  R    
Sbjct: 69  EVCSEIKKWVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSLP 128

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N+    G   +     +   +  +  L   E  +L+YL+ N G  ++K  I   ++G 
Sbjct: 129 ELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG- 187

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   + N+VE +I  LR K+ +      + + R +GY +
Sbjct: 188 FDFNGDVNIVEVYIRYLRDKIGDN-EHSIIRTVRGVGYKV 226


>gi|170693423|ref|ZP_02884582.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170141578|gb|EDT09747.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 290

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   S    +   S    D+  ++  L       L
Sbjct: 26  ILIAEDDSILADGLVRSLRQSAYAVDHVKSGVEADTALSMQSFDLLILDLGLPR--MSGL 83

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 84  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 143

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR   +  +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 144 GGGPTIVRHGSLGFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 204 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLE 242


>gi|16612082|gb|AAL27445.1|AF430807_10 VanRE [Enterococcus faecalis]
          Length = 229

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      L  ++G  +    S +    +  + + D++ ++  L        
Sbjct: 4   ILILDDEKEIVSLLSTLLSNEGYEVYEAMSGKESLEIIENNKIDLAILDVMLPD--ISGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P++ ++        +     G DD + KP +  E+LARV    RR + 
Sbjct: 62  DVLQSIREKQFFPVLMLTARGQDMDKITGLSMGADDYIVKPFNPFEVLARVKTQLRRYQT 121

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       N      + +  + R   +  E   L   E  IL YL  N G+ ++  ++F
Sbjct: 122 YNSQSIDETNEYAKNGLNISVNSRKVFLYDEEIKLTPIEFDILWYLCRNEGRVISSEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             ++   D     N V +HI+K+R+K+  K    + + +   +GY+I+
Sbjct: 182 EKVW-KEDYLENNNTVMAHIAKIREKMHEKPRQPNIIKTVWGVGYTIE 228


>gi|323359874|ref|YP_004226270.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323276245|dbj|BAJ76390.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 224

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 5/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++   +     +G + EG           S+ R D+  ++  +   G   + 
Sbjct: 8   LVLDDDETIRLSVVTALRAEGFTAEGAPDGTDLTARLSAFRPDLVVLDWMMP--GPAGIR 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +IRA     +I ++    +   L  F  G DD V KP    E++AR  A+ RR    
Sbjct: 66  LLPVIRAEGDTAVIMLTARDEVDDRLRGFAEGADDYVTKPFTVAELVARTGAVLRRRGRL 125

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + V  D       G    L   E R+L+ L  +RG+ ++K QI + ++G  D
Sbjct: 126 PQTIAIGDLVVDPDAAVAHRAGGPLDLTATEFRLLQLLAESRGRTLSKGQILTQVWGYDD 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + N+VE H+S LR+K+  + G   + + R LGY +
Sbjct: 186 Y--DPNLVEVHLSALRRKMEAR-GPRLIHTVRGLGYRL 220


>gi|298370202|ref|ZP_06981518.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281662|gb|EFI23151.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 226

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +           +     + E    L +    D+  ++  L     +  
Sbjct: 5   ILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDT--EGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           EL + +R     P+I ++        +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 63  ELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQT 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + ++           +       QG   PL + E R+L  L+   G+  ++ ++ +A++G
Sbjct: 123 RPASEAESAPVWHDDAPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAMFG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +   + + + +HI  LR KLR      +P+ +   LGYS +
Sbjct: 183 G-NRPSDPHTINTHIRALRHKLRAAGVAGEPIRTHHGLGYSFN 224


>gi|269104518|ref|ZP_06157214.1| response regulator [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161158|gb|EEZ39655.1| response regulator [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 219

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +A    +    E         +  +S   D   ++  L       +
Sbjct: 3   ILVVEDEIQLGEQIVAGLEQNSWVAELSTDGIDALYRATSEPWDAIVLDLGLP--KLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + IR  +   P++ +S    L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIREENVDCPIVILSARSELTQRVEGLNAGADDYLTKPFQMVELVARLRAQLRRST 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + GP+ + +        G+   L   E ++L YLM N+ K +++T++   IY 
Sbjct: 121 GNTSPVIQAGPLELDTRSSKVTFHGQPVELTALEFKVLSYLMHNQDKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++R+K    +G D + + R LGY I+
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRRK----VGTDVIKTVRGLGYRIN 217


>gi|320010411|gb|ADW05261.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 225

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  V  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +RA    VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRADGHAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|301048805|ref|ZP_07195803.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300299390|gb|EFJ55775.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
          Length = 240

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYSVGYRWEAD 235


>gi|266620404|ref|ZP_06113339.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288867981|gb|EFD00280.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 231

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +        +G ++ + ++  E  + L+++ + D+  ++  +   G   
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFTVIKAYDGYEALDLLENN-QVDLMIVDVMMP--GLDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +     +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR  
Sbjct: 61  IRTTLKVRETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 120

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + +    + G + +  D ++  V GE+  L   E  IL  L+ N GK  +  +
Sbjct: 121 QLGNMNQQTAGQVYKCGGLAINDDNKEVTVDGELIKLTPIEYNILLLLVKNAGKVFSIDE 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 181 IYEQIWNE-EAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIE 229


>gi|229190104|ref|ZP_04317108.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228593327|gb|EEK51142.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 229

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 4   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLP--GIDGL 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  + ++ +I ++     +  +     G DD + KP     + AR+ ++ RR++
Sbjct: 62  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 121

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYM 223


>gi|31074967|gb|AAP42072.1| unknown [Xanthomonas euvesicatoria]
          Length = 227

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G   +   +      L      D+  ++  L   G    
Sbjct: 3   ILVVEDEPKTGEYLRQGLTEAGYVSDLVPNGADGLHLALQGEYDLVILDVMLP--GLNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R    ++P++ ++    ++  +   + G DD + KP    E+LARV  I RR  
Sbjct: 61  QVLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLGKPFSFAELLARVRIILRRGH 120

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N     +   + +    R     G+   L  +E  +LE LM   G+ + ++ I S ++
Sbjct: 121 AGNEGTMLKVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  + +LR K+        + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRVKIDEGHAVKLIQTVRGMGYVLDV 223


>gi|75758856|ref|ZP_00738968.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218899977|ref|YP_002448388.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903325|ref|ZP_04067456.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|74493622|gb|EAO56726.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218542108|gb|ACK94502.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228856286|gb|EEN00815.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 230

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYI-ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D  ++++        +  V  E  +  E     +     D+  ++  L       
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEEVDLVILDIMLPE--LDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---- 116
             + R IR  S+VP+I ++       TL  F+ G DD V KP     +LAR   +     
Sbjct: 63  WSVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRK 122

Query: 117 ---RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + L+  ++      I+V    R   V      L   E  IL Y M N+G  + + Q+
Sbjct: 123 ASKKPLENEDDTLSIHGIQVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            S I+G ++ A ++  V SHI  LR KL  K     + +    GY  + N
Sbjct: 183 ISRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 229


>gi|315645110|ref|ZP_07898236.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315279531|gb|EFU42836.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         ++G  +      E    + S+    V  ++  +   G   L
Sbjct: 9   ILLVDDEPHILQFLELGLRNEGFEVRSAPDGEQAVIVASNFEPHVVVLDVMMP--GMDGL 66

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R ++     V +I ++    +   +     G DD + KP    E+LAR+ A  R   
Sbjct: 67  EVCRRLKEEGKDVAVIMLTAKDEIDDRVKGLTIGADDYMVKPFSFEELLARIQARLRNQF 126

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S       G   +    ++   QGE   L   E ++L+ L+   G  ++K+ I + ++ 
Sbjct: 127 PSLLGEIRLGSFTIDDRKKEIAYQGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E+N+VE +I  LR+KL +K     + + R  GY +D
Sbjct: 187 -YDFGGEDNIVEVYIRSLREKLGDK-EHRVIRTLRGAGYRVD 226


>gi|225376447|ref|ZP_03753668.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM
           16841]
 gi|225211823|gb|EEG94177.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM
           16841]
          Length = 228

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 90/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +          DG  +  F +    E L+   +ED+  +   ++      +
Sbjct: 4   ILVCDDEKDIVSALKIYLMADGYQV--FEAYNGREALEILKKEDIHLVLMDIMMPEMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  S VP+I ++        +     G DD V KP +  E+ ARV +  RR   
Sbjct: 62  TAMLKIREVSNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNTVELQARVKSQLRRYMK 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V  +    G I +    ++  + G+   L R E  IL+ LM + G+  +  +I+ 
Sbjct: 122 LGGGTVRPDTIVIGGIELNDVTKEVTLDGDKVQLTRTEYDILKLLMQHPGQVFSPNEIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++   +    EN V  HI  LR+K+  N      +      GY ++ 
Sbjct: 182 KVWN-DNPFRNENTVAVHIRHLREKVEYNPAEPRHLKVVWGRGYKMEV 228


>gi|213417018|ref|ZP_03350162.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213580461|ref|ZP_03362287.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213612642|ref|ZP_03370468.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213648225|ref|ZP_03378278.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213864844|ref|ZP_03386963.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828350|ref|ZP_06546263.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 223

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGYLFE 221


>gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 226

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      +      D+  ++  L       L
Sbjct: 4   ILIVEDEEKLSRFIELELKHEGYEIVKADNGRTGLEIAEKGEIDLILLDIMLPE--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S +P+I ++   ++   +   D+G DD + KP    E+LAR+    ++   
Sbjct: 62  EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +K   +    G + +               L  RE  +L+ LM N+   + ++ +   +
Sbjct: 122 TVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G +D   E NV++ +I  LR K+ +      + + R +GY I
Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223


>gi|311279965|ref|YP_003942196.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749160|gb|ADO48912.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 224

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQELGHQVDAAEDAKEADYYLGEHVPDIAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  MIRRWRSHDVSLPILVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVAARIQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVITIPPFQVDLSRRELSIHDEVIKLTAFEYTIMETLIRNSGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYAQDVITTVRGQGYLFE 221


>gi|332705560|ref|ZP_08425638.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332355920|gb|EGJ35382.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 242

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++  +         ++     +           D+  ++  L        
Sbjct: 6   ILVVDDDPAIRNLILRFLSQKNFQMQAAQDGKTALATFEQFNPDLVILDVNLPDA--LGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +++ + V ++ ++           F  G DD + KP   +E+  RV AI +R + 
Sbjct: 64  NLCQQMQSRTDVFVLLLTSRSDAADKNQGFQQGADDYITKPFDLQELENRVRAILKRKRA 123

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R+  +   + PL   E  +L +L  + G+ + ++++   +
Sbjct: 124 VTATEAERLVFDHLVIDPGRREVTIDEILIPLTALEFDLLHFLACHPGRVLRRSELIQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  +D   ++ VV+ HI ++R+K+  N      + + R +GY  +
Sbjct: 184 W-EYDYVGDQRVVDVHIGQIRRKIEVNSSDPSLIQTVRGVGYKFE 227


>gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 229

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +    +    E L+ +  +D   I   L+       
Sbjct: 5   ILIVEDERNLARFVSLELQHEGYDV--VTADNGREGLEMALEKDFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ A +RR  +
Sbjct: 63  EVTRRLQQEKNTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +      +    +++    R      E  PL +RE  +L  L++N  + + + ++  
Sbjct: 123 EATKNAPAKASTYRDLKLDVQNRAVIRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|296159399|ref|ZP_06842224.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295890383|gb|EFG70176.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 227

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G +++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEIKTGTYLRKGLTEAGFTVDWVADGVTGQHRALTEDYDLIILDVMLP--GQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R      ++ ++    +   +   + G DD + KP    E+LARV +I RR + 
Sbjct: 61  TVLKNLRRTHSTSVLLLTARDEVDDKVRGLEMGGDDYLGKPFDFAELLARVRSILRRGQP 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + +    R    QG+   L  +E  +L  LM  +G+ + ++ I S ++ +
Sbjct: 121 RDAASLQVSNLVLDLTRRKATRQGDTILLTAKEFALLWLLMRRQGEILPRSTIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIRRLRAKVDDNYEPRLIHTVRGMGYVLE 220


>gi|290352129|dbj|BAI78775.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +  PL +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|270290423|ref|ZP_06196648.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
 gi|270281204|gb|EFA27037.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
          Length = 228

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   E          L+++  ED  AI   L+      +
Sbjct: 4   ILIIEDEKSLARFVELELQHEGYETEV--QGNGRTGLEAALSEDFDAILLDLMLPEINGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ R+   
Sbjct: 62  EVCRRIRREKITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRQVDL 121

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       E   I +  + R  +   EV  L +RE  +L  LM N     ++  + 
Sbjct: 122 EEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLTKREYELLLLLMENVNVVQSRETLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++GL D  VE NVV+ +I  LR K+        + + R  GY +
Sbjct: 182 SKVWGLED-GVETNVVDVYIRYLRNKIDVAGQPSYIQTVRGTGYVM 226


>gi|295700958|ref|YP_003608851.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440171|gb|ADG19340.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 225

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A           + G +++          L   +  DV  ++  L        
Sbjct: 3   ILVIEDEAKTSAYLKKGLEESGYTVDIAADGAEGLILAKESEYDVIVLDVMLPS--IDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +RA    P++ ++    +   +   + G DD + KP    E+LARV  + RR   
Sbjct: 61  TVLKTLRATQTTPVLFLTARDDVSDRVKGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N+    G + V    R  +  G+   L  +E  +L+ L+  +G+ + +TQI S ++ +
Sbjct: 121 RENDVLTLGDLEVDVTRRRVKRGGKRIDLTPKEFSLLQLLVRRQGEVLTRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            +   + NVVE  I +LR K+ +      + + R +GY 
Sbjct: 181 -NFDSDTNVVEVAIRRLRGKVDDDFPVKLIHTVRGVGYV 218


>gi|296135841|ref|YP_003643083.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|294340005|emb|CAZ88369.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
 gi|295795963|gb|ADG30753.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 242

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +    +    R D+  ++  L   GE  L
Sbjct: 9   LMVVDDDARIRDLLRRYLSQEGYEVFVAEDSKAMSRIMVKERFDLIVLDLMLP--GEDGL 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + +RA     P+I ++        +   + G DD + KP + RE+LAR++A+ RR  
Sbjct: 67  SICKRLRASKDQTPIIMLTAKGEDVDRIIGLEVGADDYLPKPFNPRELLARISAVLRRQP 126

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      +     GP  +    R+    GEV  L   E  +L+ L+ +  + +++ 
Sbjct: 127 SPELPGAPSREDETVVFGPFSLDLARRELSKNGEVISLTTGEFAMLKALVRHPRQPLSRD 186

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  D    +  ++  IS+LRK +  +      + +   +GY  
Sbjct: 187 RLAELARGR-DYEAFDRSLDVAISRLRKIIETDAAHPRYIQTVWGVGYVF 235


>gi|229007521|ref|ZP_04165116.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228753659|gb|EEM03102.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
          Length = 223

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + + +E LQ      +V  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGKEALQRWDEEPNVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 KVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + ++   R   V GE   L  RE  + +   +N+ +   + ++ 
Sbjct: 119 MKHGVPKDDKVIRAGELVIYPKERKVHVNGEEIDLTYREFNLCQLFASNKQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+ +     V+  + +LRKKL        + +   +GY +D 
Sbjct: 179 EKVWG-FEYSGNTRAVDIMVQRLRKKLGASGEH--IKTIYGVGYKLDC 223


>gi|229166773|ref|ZP_04294523.1| Two-component response regulator vanR [Bacillus cereus AH621]
 gi|228616770|gb|EEK73845.1| Two-component response regulator vanR [Bacillus cereus AH621]
          Length = 242

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     A    +G  +  F++   EE L+      +      ++      +
Sbjct: 16  ILIVDDDRDIVRFVNANLMQEGFKV--FSAHNGEEALEIINNNSIQLAILDIMMPQMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           EL R IR    +P++ +S        +  F +G DD + KP    E +ARV A  RR   
Sbjct: 74  ELCRRIREKHSLPIMFLSAKSLDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +V   +     + +    R   + GE   L + E  IL  + A   +     +I
Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEI 193

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +++         N V  HI++LR K+  N      + +   +GY I+
Sbjct: 194 YESVWKERAYESN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241


>gi|291087543|ref|ZP_06571994.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291074707|gb|EFE12071.1| regulatory protein VanR [Clostridium sp. M62/1]
          Length = 273

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + +  E L+     +V+ +   ++  G   +
Sbjct: 46  ILVCDDDRQIVEAIDIYLTGEGFEV--IKAYDGLEALELLKTHEVNLMIVDVMMPGLDGI 103

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 104 RTTLKVRETSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 163

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  +   + G +++  + ++  V GE+  L   E  IL  L+ N GK  +  QI
Sbjct: 164 LGNMHTQSDSRVYKCGGLQINDENKEVLVDGELIKLTPIEYNILLLLVKNAGKVFSIDQI 223

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 224 YEEIWNE-EAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIE 271


>gi|187925269|ref|YP_001896911.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716463|gb|ACD17687.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 260

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLVRSLRQSAYAVDHVKSGVEADTALSMQSFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSTLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR   V  +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLE 219


>gi|218438325|ref|YP_002376654.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171053|gb|ACK69786.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 226

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +    +   +G +++  ++ +    L  +   D+  ++  L       L
Sbjct: 3   ILLVDDEVELTEPLRQVLSKEGYTIDVADNGKTGLQLALNHGYDLLILDWMLPY--LSGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + +R      P++ ++   +L   +   D G DD + KP   RE+LARV A+ RR  
Sbjct: 61  EICQQLRSQGKTTPVLFLTAKDTLDDRVMGLDVGADDYLIKPFQLRELLARVRALLRRSP 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +S  R +   + +  + +     G    L  +E  +L Y M + G+ +   QI+ 
Sbjct: 121 TFEANISQERLKAADLELDPENQMAYRHGRGISLSEKEVMLLSYFMLHPGQLLTHEQIYQ 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++    E    NV+ + +  LR+K+        + +    GY  
Sbjct: 181 HLW-TEKEQPNSNVLAALVRLLRRKIEADGELPLIHTVYGKGYRF 224


>gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42]
 gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42]
          Length = 231

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +    + + +  LQ    + +  +   ++  G   +
Sbjct: 5   ILVVEDDRDIGDLLEESLTRSGYEV--LTAKDGKRALQ-LVNDSLDLVILDIMMPGISGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP++ ++   S     +   +G DD + KP    E+ ARV A  RR  +
Sbjct: 62  ETCQHIRKTSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTI 121

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E        G +RV  +  +   + +   L   E RIL+ LM+ R K  +   I+
Sbjct: 122 YQEKKEQEETFLIGGNLRVSEEFNEVYKEEQQIKLSDLEYRILKLLMSKRNKIFSAQNIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +++G        N V  HI KLR K+ +       + ++   GY  
Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRF 228


>gi|160873420|ref|YP_001552736.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|160858942|gb|ABX47476.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315265649|gb|ADT92502.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 225

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +  F + G ++E  +       L +S++ D+  ++  L       L
Sbjct: 3   ILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQ--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA     P++ +S    +   +    +G DD + KP    E+L R   +  R +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQ 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +   G +++    R+  + G+   L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SVPVTTDLVVGGLKMELLTRNVTLDGQELLLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|310824267|ref|YP_003956625.1| winged helix family two component transcriptional regulator
           [Stigmatella aurantiaca DW4/3-1]
 gi|309397339|gb|ADO74798.1| Two component transcriptional regulator, winged helix family
           [Stigmatella aurantiaca DW4/3-1]
          Length = 241

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         + G+ +    +             DV  ++  L   G   LE
Sbjct: 16  LLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLP--GRDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        +   ++G DD + KP   RE+LAR+ A  RR + +
Sbjct: 74  VCRELRTRSDVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRARGN 133

Query: 123 N----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G +++        + G+   L   E  +L  L    G+ +++ Q+   I 
Sbjct: 134 AGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLDLIK 193

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G  DE V +  ++ HI +LR+KL  +      + + R  GY +
Sbjct: 194 GSADE-VFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 235


>gi|218236076|ref|YP_002365447.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218164033|gb|ACK64025.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 225

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNLPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGIGYR 219


>gi|331082889|ref|ZP_08332010.1| hypothetical protein HMPREF0992_00934 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400030|gb|EGG79683.1| hypothetical protein HMPREF0992_00934 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 226

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  L++D   +++  +      G+  EGF               D+  ++  L    E  
Sbjct: 1   MIYLVEDDESIRELLVYTLNGQGLVAEGFAYPSDFWHAMEKKIPDLVLLDIMLPE--EDG 58

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+ + +R       +P+  ++   S    +   D G DD + KP    E+++RV A+ R
Sbjct: 59  LEILQKLRKKKETKNIPIAMLTAKGSEYDVVKGLDGGADDYIPKPFRMMELVSRVKALLR 118

Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R      + +     G + V       +V+GE   L  +E  +L   ++N G   ++ Q+
Sbjct: 119 RGGQEQPQDDEEYVLGELYVSKKRHLVKVKGEEVTLTMKEFELLLLFLSNPGIVFSRAQL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+G +    E   V+ HI  LR+KL+       +++ R +GY +
Sbjct: 179 LDKIWG-YQFDGESRTVDVHIRTLRQKLKEAG--RYIETVRGIGYKV 222


>gi|149926102|ref|ZP_01914365.1| DNA-binding response regulator [Limnobacter sp. MED105]
 gi|149825390|gb|EDM84601.1| DNA-binding response regulator [Limnobacter sp. MED105]
          Length = 222

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 105/222 (47%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++        G  G + +   +    E        D+  ++  L   G+  L
Sbjct: 3   LLLVEDDPVLGAQLHKQLGKAGYAADWVQNGNEAEAQGCIEPYDLVVLDLGLP--GKSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ +  RA   ++P+I ++   + Q  ++ F++G DD V KP    E+LAR+ A+ +R  
Sbjct: 61  DVLKGWRAQGLKLPVIVLTARGTWQEKVEGFNAGADDYVPKPFQTEELLARIGAVLKRAV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +    +   + +    +  +V  E    L   E R+L Y M + G+ ++KT++   +Y
Sbjct: 121 GTAPESLKAKGLLLDETLQTVKVDNEEPQQLTGTEFRLLRYFMLHPGQPLSKTRLTEHVY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + NV+E ++++LRKK+    G   + +++  GY  
Sbjct: 181 -EYDADKDSNVMEVYVNRLRKKI----GAQWIQTRKGQGYVF 217


>gi|332638553|ref|ZP_08417416.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 229

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G      ++      LQ++   D   I   L+      LE
Sbjct: 5   LVIEDEVNLARFVELELQHEGYETHVEDNGRG--GLQAALDNDYDLILLDLMLPELSGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R     P+I ++   S+   +   D G DD V KP    E+LARV A+ RR+ + 
Sbjct: 63  VARRLREVKNTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRRINIE 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      + V  + R      ++  L +RE  +L  LM N     ++ ++  
Sbjct: 123 TEEHSTHQSVVRYRDLTVEKENRIARRGNDIINLTKREYELLLILMENINVVQSREELLK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++G +D  +E NVV+ +I  LR K+         + + R  GY +
Sbjct: 183 KVWG-YDSQIETNVVDVYIRYLRNKIDQPDSRASYIQTVRGTGYVM 227


>gi|332185092|ref|ZP_08386841.1| response regulator [Sphingomonas sp. S17]
 gi|332014816|gb|EGI56872.1| response regulator [Sphingomonas sp. S17]
          Length = 235

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 87/231 (37%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G     +   E           D++  +  +       L
Sbjct: 5   IALVDDDRNILTSVSIALQAEGFLTRIYADGEAALKALIDNPPDLAIFDIKMPR--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  SQ+P+I ++              G DD + KP   R ++AR+ AI RR + 
Sbjct: 63  ELLRRLREKSQIPVIFLTSKDDELDEALGLAMGADDYIAKPFSQRLLIARIRAILRRSEG 122

Query: 122 SNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           S+                G + +         +GE   L   E  ILE L    G    +
Sbjct: 123 SSQTPGTPAAEVQGPLTRGQLAMDPARHKVTWKGEPVTLTVTEFLILETLAQRPGIVRTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            Q+  A Y   D  V++  ++SHI +LR+K R     FD +++    GY  
Sbjct: 183 NQLMDAAY-QDDIYVDDRTIDSHIKRLRRKFRQVDPEFDAIETLYGAGYRF 232


>gi|302186071|ref|ZP_07262744.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae 642]
          Length = 225

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLP--GLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G+   L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|298291237|ref|YP_003693176.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927748|gb|ADH88557.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 220

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A++ DG  A     G++++   +    E    S+R D   ++  L        
Sbjct: 3   ILLVEDDAVLADGIRAGLWLAGLTVDAVGNCADAEAALGSSRFDAVVLDLMLPD--GSGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++   +RA     P+I ++        +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLATLRARHDATPVIVLTALDETPDRVRGLDGGADDFLGKPFDLDELAARLRALVRRGG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G + +        +     P+ RRE  +L  LM   G   +K ++   +YG
Sbjct: 121 GRASPLLTHGTVALDPATLSVSIDEVPVPVSRREFAVLSMLMERPGVIRSKGELEERLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N VE +I  LR KL    G D +++ R LGY +
Sbjct: 181 -WQEEIESNTVEVYIHNLRAKL----GRDLIETVRGLGYRL 216


>gi|228899749|ref|ZP_04063996.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228859863|gb|EEN04276.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 214

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++            +   +  +  E ++   ++    I   ++       E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVAS--DGLEGMKQFNKQSFDLILLDVMMPNLNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   + +
Sbjct: 60  KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N      + V  D     V     PL  +E  IL+ L+ N  K + +  I   I+G ++
Sbjct: 120 DNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLRNEKKVLTRDNIVEKIWG-YE 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A +  ++++H+  +RKKL        + + + +GY ID
Sbjct: 179 YAGDTRMIDTHMKNIRKKLD----IPYIKTVKGIGYKID 213


>gi|87199648|ref|YP_496905.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135329|gb|ABD26071.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 227

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +           L +S   D   ++  L        
Sbjct: 3   ILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPD--MDGF 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R   S +P+I ++    +   +     G DD + KP    E+LAR+ AI RR+ 
Sbjct: 61  EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120

Query: 121 VS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            S       + R   G +            G    L  +E  +L  LM + G  +++T+I
Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             A++G+ D+ +  N+VE ++S+LR+KL + LG   V++ R  GY +
Sbjct: 181 LRAVWGMEDDPL-TNIVEVYLSRLRRKL-HALGPPVVENVRGFGYRL 225


>gi|16764586|ref|NP_460201.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56413783|ref|YP_150858.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|168239138|ref|ZP_02664196.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194444063|ref|YP_002040487.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448565|ref|YP_002045233.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194471531|ref|ZP_03077515.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736162|ref|YP_002114238.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195874180|ref|ZP_02701035.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197251572|ref|YP_002146810.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197261891|ref|ZP_03161965.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362706|ref|YP_002142343.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198244282|ref|YP_002215904.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200390596|ref|ZP_03217207.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204930765|ref|ZP_03221638.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205357417|ref|ZP_02347547.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205357746|ref|ZP_02573078.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205358670|ref|ZP_02658171.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205359350|ref|ZP_02669237.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205360059|ref|ZP_02834338.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205360758|ref|ZP_02686229.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|207857262|ref|YP_002243913.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224584261|ref|YP_002638059.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|130127|sp|P14146|PHOP_SALTY RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|73621400|sp|Q5PMJ1|PHOP_SALPA RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|154264|gb|AAA27187.1| PhoP protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|154266|gb|AAA27188.1| phoP protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|7007369|emb|CAB75591.1| PhoP protein [Salmonella typhimurium]
 gi|16419749|gb|AAL20160.1| response regulator in two-component regulatory system with PhoQ
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56128040|gb|AAV77546.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194402726|gb|ACF62948.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406869|gb|ACF67088.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457895|gb|EDX46734.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711664|gb|ACF90885.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630373|gb|EDX48999.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094183|emb|CAR59687.1| transcriptional regulatory protein PhoP,regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197215275|gb|ACH52672.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240146|gb|EDY22766.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288154|gb|EDY27541.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197938798|gb|ACH76131.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603041|gb|EDZ01587.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320224|gb|EDZ05428.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205321841|gb|EDZ09680.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329802|gb|EDZ16566.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332740|gb|EDZ19504.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336749|gb|EDZ23513.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205341203|gb|EDZ27967.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347225|gb|EDZ33856.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709065|emb|CAR33398.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|219523857|gb|ACL14891.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
 gi|219523864|gb|ACL14894.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
 gi|219523866|gb|ACL14895.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi A]
 gi|219523868|gb|ACL14896.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
 gi|224468788|gb|ACN46618.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261246443|emb|CBG24253.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993010|gb|ACY87895.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157772|emb|CBW17265.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912219|dbj|BAJ36193.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320086328|emb|CBY96101.1| Response regulator mprA Mycobacterial persistence regulator A
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223849|gb|EFX48912.1| Transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322673635|gb|EFY69737.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322687247|gb|EFY83219.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323129501|gb|ADX16931.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323218886|gb|EGA03397.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323242880|gb|EGA26901.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246796|gb|EGA30766.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323259404|gb|EGA43040.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|326623652|gb|EGE29997.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|332988122|gb|AEF07105.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 224

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPD--EDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 63  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGYLFE 222


>gi|323485055|ref|ZP_08090408.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323693570|ref|ZP_08107773.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
 gi|323401611|gb|EGA93956.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323502378|gb|EGB18237.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
          Length = 230

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 99/226 (43%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +++       D G  +    + LE     Q   R D+  ++  L       
Sbjct: 4   ILIIEDERDIEEFLRFFLEDSGYEVAVARDGLEGITAFQKD-RYDLILLDIMLP--KIDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             +  +IR  S +P+I I+   S +  +   D   DD + KP     ++ ++AA+ RR  
Sbjct: 61  FAVCELIRKESNIPVIMITALSSEEEQVRGLDLLADDYITKPFSMPVLIRKIAAVLRRSG 120

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N +     + +  D     V GE   L +RE  IL  L+ ++GK + +  +  
Sbjct: 121 RGAKAGENQKLIYRDLCLDLDNYQTFVDGEPVALTKREFEILRELLNHQGKVMTREILLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  ++    + VV++HI  LR+KL      D +++ + +GY ID
Sbjct: 181 KLW-KYEFYGNDRVVDNHIKNLRRKLER----DYIETVKGIGYRID 221


>gi|308187501|ref|YP_003931632.1| transcriptional regulator [Pantoea vagans C9-1]
 gi|308058011|gb|ADO10183.1| Probable transcriptional regulator [Pantoea vagans C9-1]
          Length = 235

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 5/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +    I             +  +    L+   +     +   L+  G   
Sbjct: 9   LILVVEDEPKLAQLMIDYLHASNYRTH--HIADGNAVLEYVRQTPPDLMLLDLMLPGTDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR HS++P+I ++        L   + G DD + KP   RE++ARV  I RR+K
Sbjct: 67  LTLCREIRRHSELPIIMVTARTEEIDRLLGLELGADDYICKPFSPREVVARVKTILRRVK 126

Query: 121 VSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S    ++   +RV         + +   L   E R+L+ L    GK  ++ Q+ + +Y 
Sbjct: 127 RSAEEPQSASLLRVDESRFFASWREKPLDLTPAEFRLLKTLSLEPGKVFSREQLLNHLYD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
            +   V +  ++SHI  LR+KL N     P + +   +GY  + +
Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLENLDSEQPFIRAVYGMGYRWEAD 230


>gi|326790543|ref|YP_004308364.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541307|gb|ADZ83166.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 228

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V D        +G  +  F        L    +  +  +   L+    +  
Sbjct: 3   ILVIEDEERVADIMTKYLEKEGYKV--FTCYTGRSGLDCFYKNKIDIVLLDLMLPDIQGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S V +  I+   +L + +D FD G D+ + KPI  RE++ARV A+  R + 
Sbjct: 61  EICAEMRQVSNVHIFMITAKGTLDSKIDGFDRGADEYLVKPISPREVVARVKALDTRKQR 120

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N+     + G  ++F   R  ++  E   L   E  +L  L +  G+  ++ Q+  A+
Sbjct: 121 EENKEMLVFDKGHFKIFLQERIVQINNEEITLTPNEFDLLYELASAPGRVFSRDQLIEAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            G+ D    +  ++ HI  LRKK+  +      + +   +GY  +
Sbjct: 181 MGI-DFDGFDRTIDVHIKNLRKKIETDTKNPRYIKTVTGVGYKFE 224


>gi|271963089|ref|YP_003337285.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506264|gb|ACZ84542.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 241

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 99/224 (44%), Gaps = 13/224 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  ++     E      + +  DV  ++  L   G   LE
Sbjct: 22  LVVEDDETIARAVRHRLAAEGFDVQVVGDGEGALAAYARSGPDVVVLDRLLP--GLDGLE 79

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R ++A   VP++ ++        L     G DD + KP   RE++ARV A+ RR++  
Sbjct: 80  VCRRMQAARPVPVLMLTALGEETDLLVGLGVGADDYMTKPFSMRELVARVHALLRRVERA 139

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V++     G + + +  R   V+G    L R E  +L  L    G+   + ++ + 
Sbjct: 140 SQLAVADPVIRAGDVEIDTAERRVYVRGAEAQLTRTEFDLLCRLAERPGQVFERERLLND 199

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G F EA     V+SH+  LR+KL    G   V +   +GY++
Sbjct: 200 IWG-FSEAAATRTVDSHVRALRRKL----GPGVVRTVHGVGYAL 238


>gi|212711730|ref|ZP_03319858.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM
           30120]
 gi|212685832|gb|EEB45360.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM
           30120]
          Length = 223

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 98/220 (44%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    +        + G  ++  +      +        +  ++  L   G    
Sbjct: 3   ILLIEDHLKTQGWVKNGLEEAGFLVDVADDGRDGLYFALENNYQLVILDIMLP--GMNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R    +P+I ++   ++   +   + G +D + KP    E+LARV    +  + 
Sbjct: 61  EILKILRTAKNIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKVNQP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       +++     + E  G+   L R+E  +L + + +  + + +T I S ++G+ 
Sbjct: 121 VSTTMTIADLKIDLTRHEVERGGQKIILTRQEFSLLLFFVLHCDEILPRTLIASEVWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + N+++  I +LRKK+ ++     +++ R +GY ++
Sbjct: 180 DFDSDTNIIDVAIRRLRKKIDDEFEIKLIETIRGMGYRLN 219


>gi|228913685|ref|ZP_04077312.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|301052645|ref|YP_003790856.1| transcriptional regulator [Bacillus anthracis CI]
 gi|228845973|gb|EEM90997.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|300374814|gb|ADK03718.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 240

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +   A+   +G   +    + +    +    R D+  ++  L       
Sbjct: 13  ILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVRPDLILLDIMLPD--LDG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             +   IR  + VP+  +S        +     G DD + KP   +E+  ++ A +RR +
Sbjct: 71  YSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + N  + G I +          G +  L  +E  IL +L+ N  +  +K +++ A+
Sbjct: 131 YKEKNPNMYQFGDITIDEAQGTVLRAGTLLNLTAKEFNILLFLIKNPNQIFSKARLYEAV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G       +N++  H+  LR+K+ +     + + + R LGY ++
Sbjct: 191 WGET-YLGNDNIMMVHMRHLREKIEDNPSKPNYLVTVRGLGYKLN 234


>gi|119714578|ref|YP_921543.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119535239|gb|ABL79856.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 233

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     +    DG ++   +              DV  ++  L   G   +E
Sbjct: 7   LVVEDEPELARLVGSYLERDGFAVTIVHDGLEAVARSREVDPDVVVLDLGLP--GLDGVE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R  S   ++ ++       TL     G DD + KP   RE++ARV A+ RR +  
Sbjct: 65  VCRRLRTFSDGYVVMLTARSDEVDTLIGLSVGADDYLTKPFSPRELVARVQAMLRRPRPL 124

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +      G + +   GRD  ++    PL R E  +L  L    G   ++ Q+  
Sbjct: 125 GHMDADAGEALSFGDLTIELAGRDVWLEDRAVPLTRTEFDLLATLAQRPGMAFSRRQLID 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           A++G      +E++V+ H+  LR KL +       V + R +GY +
Sbjct: 185 AVWGPA-WVGDEHLVDVHVGHLRHKLGDSAAEGRYVRTVRGIGYRM 229


>gi|302335659|ref|YP_003800866.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301319499|gb|ADK67986.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 228

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  + +  D   + E     +       S   D   ++  L   G   +
Sbjct: 3   ILVVEDERNLADAIVRILSDADYNAEAVYDGKSGLTACESGLYDAVIMDGMLP--GMDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R  +  +P++ ++   S    ++  D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVVRRLRRENNSIPVLMLTARTSTSDKVEGLDAGADDYMTKPFESPELLARLRALTRRQG 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V  +      + +     D    G    L  +E  +L  LM++  + ++K  + + ++G
Sbjct: 121 DVVIDEVSFADLTLDLATHDLSCDGHTVHLSGKEFEVLRMLMSSTARVISKQDLLTRVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D    EN VE++IS LRKK+ +      + + R LGY ++
Sbjct: 181 T-DGEASENSVEAYISFLRKKISHVHSTVQITTLRMLGYRLE 221


>gi|209526757|ref|ZP_03275279.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209492801|gb|EDZ93134.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 253

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + ++          G S+           +      D+  ++  +        
Sbjct: 16  ILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPR--LNGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + IRA S +P+I ++    +   +   + G DD + KP   +E+ AR+ AI RR K 
Sbjct: 74  GVCQKIRAISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRRFKD 133

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +S    +   +R+ +  R      ++ PL   E  +LE L    G+ V++++I 
Sbjct: 134 NASSHDLSPEVIQVDTLRIDTIKRRVYKGDKLLPLTYIEFNLLELLFKRSGEAVSRSEIL 193

Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             ++G     + +  VV+ H+++LR K+  ++   + + + R +GYS
Sbjct: 194 QQLWGYTPRRIADMRVVDVHVARLRAKIETDQRNPEYILTVRGIGYS 240


>gi|254247838|ref|ZP_04941159.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124872614|gb|EAY64330.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 270

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D A+  +  +      G  ++  ++         SA  D   ++  L   G   L + 
Sbjct: 52  VEDDAVTANEIVGELTARGFEVDWTDNGRDGMMRAMSASYDAITLDRMLP--GADGLAIV 109

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
             +R      P++ +S    +   +    +G DD + KP    E+ AR+  + RR + S 
Sbjct: 110 TAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQASG 169

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + +    R      +  PL   E R+LE++M N G+ + +T +F A++G
Sbjct: 170 VPQQTLLKVGVLELDLISRCARRGTDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEAVWG 229

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ H+ +LRKK+        + + R  GY +
Sbjct: 230 -YHFDPGTNLIDVHMGRLRKKIDPPGANPMIQTVRGSGYML 269


>gi|49078508|gb|AAT49792.1| PA2657 [synthetic construct]
          Length = 224

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A     G +++            +S   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLP--GRPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R      P++ ++   S    +D   +G DD + KP H  E+   + A+ RR  
Sbjct: 61  EILQEWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALHIQALLRRAH 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + ++ E   +R+    +   + G    L   E R+L Y M + G+ ++K  +   +Y
Sbjct: 121 GLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              +   + NV+E H++ LR+KL    G + ++++R  GY 
Sbjct: 181 DG-ETERDSNVIEVHVNHLRRKL----GREVIETRRGQGYR 216


>gi|323171415|gb|EFZ57062.1| transcriptional regulatory protein creB [Escherichia coli LT-68]
          Length = 229

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGVPVLDKARQLVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 SSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|237734077|ref|ZP_04564558.1| signal transduction regulator [Mollicutes bacterium D7]
 gi|229382903|gb|EEO32994.1| signal transduction regulator [Coprobacillus sp. D7]
          Length = 229

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++        +G  +  F++              ++  +  L       +
Sbjct: 7   IFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLMLP--KMSGI 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  + IR   S++P++ +S        ++  DSG DD + KP    E+ ARV ++ RR  
Sbjct: 65  DAIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRR-H 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+++   T  + V    R  ++  +   L  +E ++L YLM N+ + V + ++ + I+G 
Sbjct: 124 VTSDIIRTKHLTVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWG- 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E   ++ HI  LR KL +  G   + + R +GY  
Sbjct: 183 YDFIGESRALDVHIRALRSKLNDD-GHKYIKTIRSVGYRF 221


>gi|209558840|ref|YP_002285312.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
 gi|209540041|gb|ACI60617.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
          Length = 228

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  ++  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEGNGREGLKTALEKEFDLILLDLMLPE--MDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|167756098|ref|ZP_02428225.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402]
 gi|167704090|gb|EDS18669.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402]
          Length = 250

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 94/233 (40%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G ++   N+ +    L+   R D+      ++      +
Sbjct: 20  ILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKA--GLEMVERYDIHLAIVDIMMPVMDGI 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   IR +   P+I +S        +   + G DD V KP    E+LARV++  RR   
Sbjct: 78  EMTMKIRENYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHK 137

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       + N+   G + +  D ++  V G+   +   E +ILE LM   G+  +
Sbjct: 138 YLNMIGKIQEDQAANKYVVGGLELDLDTKEVSVDGKAVKVTPIELKILELLMEKPGRVFS 197

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             QI+  ++   + A+    V  H+  LR+K+  N      +     +GY I+
Sbjct: 198 SEQIYENVW--HEAAINTETVMVHVRNLREKIEINPSNPQYLKVVWGVGYKIE 248


>gi|330809365|ref|YP_004353827.1| two-component regulator system, response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377473|gb|AEA68823.1| Putative two-component regulator system, response regulator
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 219

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + D       DDG +++   +L       S+   D+  ++  L     + L+
Sbjct: 4   LLVEDSPRLGDAVREQIADDGHAVDWVQNLAQARSSVSTTAYDLILLDLMLPD--GRGLD 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R  R+      +I ++    +   +   ++G DD + KP    E+ ARVAA+ RR   
Sbjct: 62  FLRQRRSAGDATAVIILTAQDQISDRIAGLNAGADDYLVKPFDLFELSARVAAVARRYSG 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N +   G + V    R  +  G    L  RE  +LE  +   G  ++K Q+   +Y  
Sbjct: 122 NPNPQIRLGELHVDMTARTLQRAGMAVDLTAREWALLEAFIQRPGALLSKGQLEDRLY-A 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F   +E N +E +IS+LRKKL    G D +++ R +GY +
Sbjct: 181 FGAEIESNTIEVYISRLRKKL----GRDLIETVRGMGYRM 216


>gi|295398157|ref|ZP_06808206.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973676|gb|EFG49454.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++   +    + + +E L+  A   D++ +   ++  G+  
Sbjct: 3   ILITDDDKEIVELLTIYATNEDYEV--IQAFDGDEALKKIAENPDIAMMVLDIMMPGKDG 60

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + + +R     +P++ +S   S    +    +G DD V KP +  E++AR+ ++ RR 
Sbjct: 61  ITVIKELRKRDVDMPILLLSAKSSDMDKISGLTTGADDYVTKPFNPLEVMARIKSLLRRA 120

Query: 120 KVSNN---RAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + +     E GP+ +  +  +     G+   L   E  IL  L +N     +  +IF 
Sbjct: 121 STAGDDSATIEVGPLVINKNSHEVKTTDGQQIQLTALEFGILYLLASNPNNVFSADEIFE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            ++   +  V    V  H+S LR K+    G D  + +   +GY I
Sbjct: 181 RVWQQ-ESVVSAKTVMVHVSHLRDKIGEATGGDKVISTVWGVGYKI 225


>gi|71907609|ref|YP_285196.1| osmolarity response regulator [Dechloromonas aromatica RCB]
 gi|71847230|gb|AAZ46726.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 243

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D  +   G+ G  ++     +  + L+S     +  ++  +   GE  L
Sbjct: 10  ILVVDDDARLRDLLVRYLGEQGFEVKAAADGQQMDKLRSREHYHLIVLDLMMP--GEDGL 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R    Q P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 68  TICRRLRGQGDQTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIHAVLRRQG 127

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             I V    R  +   E+  L   E  +L+ L+ +  + +++ +
Sbjct: 128 SKPPGAPEDEPETITFSNIEVDLAARTLKRGEELQALTTGEFAVLKVLLQHPRQPLSRDK 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + S   G  ++   +  ++  +S+LRK +  +      + +    GY  
Sbjct: 188 LMSLARGR-EQGPFDRAIDVQVSRLRKLIETDPAQPRYLQTVWGFGYVF 235


>gi|297625346|ref|YP_003687109.1| Response regulator, two-component system [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921111|emb|CBL55658.1| Response regulator, two-component system [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 239

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +       F  +G   E     +  E + ++ R D S +   L       +
Sbjct: 14  ILIVEDEHSLATVMAGYFTRNGYRAEV--VGDGLEAVAAARRLDPSVVILDLGLPSLDGV 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S   ++ ++        L     G DD + KP   R ++ARV A+ RR + 
Sbjct: 72  EVARRIRTFSDCYILMLTARADEVDELIGLSVGADDYLTKPFSPRLLIARVQAMQRRPRS 131

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G + +    R+ ++      L R E  +L +L  N  + +++ ++  A
Sbjct: 132 AITPPDEQPLRIGELTIDPAAREVQLGTREIALTRTEFDLLAHLARNPRRAISRDELIEA 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G+   + ++ +V++HI  LRKKL +       +++ R +GY +
Sbjct: 192 VWGVG-WSGDDQLVDTHIGHLRKKLGDSAANARFIETVRGVGYRM 235


>gi|217976385|ref|YP_002360532.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217501761|gb|ACK49170.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 231

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +   +     F + G   +  +  +  E    +  ED   +    +      L
Sbjct: 7   ILIVEDDSEAANYMAKAFREAGHVAD--HVGDGLEGYARAREEDYDVLIVDRMLPKLDGL 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +RA   + P++ +S    +   +    +G DD ++KP    E+LARV  + RR +
Sbjct: 65  SLIGGLRAQKVETPVLILSALGQVDDRVKGLRAGGDDYLSKPYAFAELLARVEILARRKQ 124

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +         +G+   L  RE R+LEYLM + G+ V +T +   +
Sbjct: 125 NGTGEETVYRVGGLELDRLAHKVAREGKEIQLQPREFRLLEYLMRHAGQVVTRTMLLENV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 185 WD-YHFDPQTNVIDVHISRLRSKIDKGFEPPLLQTIRGAGYMI 226


>gi|161614534|ref|YP_001588499.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|238910949|ref|ZP_04654786.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|161363898|gb|ABX67666.1| hypothetical protein SPAB_02283 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|322616607|gb|EFY13516.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619878|gb|EFY16752.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622446|gb|EFY19291.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629436|gb|EFY26213.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632932|gb|EFY29675.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636823|gb|EFY33526.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641377|gb|EFY38016.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322645142|gb|EFY41671.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652305|gb|EFY48661.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655657|gb|EFY51959.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660962|gb|EFY57192.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322665452|gb|EFY61640.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667571|gb|EFY63732.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322677561|gb|EFY73625.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679774|gb|EFY75813.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|323193061|gb|EFZ78283.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199442|gb|EFZ84535.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203630|gb|EFZ88652.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208829|gb|EFZ93767.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209871|gb|EFZ94787.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217803|gb|EGA02518.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323226634|gb|EGA10834.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229606|gb|EGA13729.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323232831|gb|EGA16927.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240133|gb|EGA24177.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323254304|gb|EGA38121.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255570|gb|EGA39329.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323267000|gb|EGA50485.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272104|gb|EGA55518.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 223

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGYLFE 221


>gi|86750553|ref|YP_487049.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573581|gb|ABD08138.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 241

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D  +  F + G   +  +  E    L  S   DV  I+  L  +    L
Sbjct: 18  LLIIEDDRESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVIDRMLPKR--DGL 75

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R   ++ P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 76  SVIGTLRDKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +           E   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 136 GPAEETSYRVGDLELDRLSHRVTRGSEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 196 D-YHFDPQTNVIDVHISRLRGKIDKGFDRPLLHTIRGAGYMI 236


>gi|229588502|ref|YP_002870621.1| tw-component system, response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229360368|emb|CAY47225.1| tw-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 230

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++     E  E L  +   D + I   ++  G     
Sbjct: 4   LIIEDEEKTADYLHRGLTEQGYTVDVAR--EGVEGLHLALENDYAVIVLDVMLPGLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLE 220


>gi|254388578|ref|ZP_05003812.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702299|gb|EDY48111.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 243

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G + E             S R D+  ++  +       L
Sbjct: 10  ILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPR--MDGL 67

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 68  TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 127

Query: 121 VSN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            ++                   +R+    R+         L R E  +LE L+A+  + +
Sbjct: 128 YASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVL 187

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + QI  +++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 188 TREQILKSVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRIVHTVRGVGYVL 238


>gi|221067068|ref|ZP_03543173.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712091|gb|EED67459.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     +       + G   +   +      +       +  ++  L   G    +
Sbjct: 4   LIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHMALQGEYSLVILDVMLP--GLNGWQ 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     +P++ ++    ++  +   + G DD + KP    E+LARV  I RR   
Sbjct: 62  VLQALRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGHP 121

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N         + +    R     G+   L  +E  +LE LM   G+ + ++ I S ++ 
Sbjct: 122 ANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NV+E  + +LR K+        + + R +GY +D 
Sbjct: 182 M-NFDSDTNVIEVAMRRLRAKIDEGHSIKLIQTVRGMGYVLDV 223


>gi|127513623|ref|YP_001094820.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126638918|gb|ABO24561.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 226

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++       D   +L+  +  E   +       D + I+  L       +
Sbjct: 3   LLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLP--KLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L   +R      P++ ++   + Q  ++  D+G DD + KP H  E++AR+ A+ RR  
Sbjct: 61  ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+   + GP  + +   + +   +   L   E ++ EY M + G+  +K+ +   IY 
Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +LRKKL     +  +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGYRL 220


>gi|331681384|ref|ZP_08382021.1| transcriptional regulatory protein CreB [Escherichia coli H299]
 gi|331081605|gb|EGI52766.1| transcriptional regulatory protein CreB [Escherichia coli H299]
          Length = 229

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|169350719|ref|ZP_02867657.1| hypothetical protein CLOSPI_01492 [Clostridium spiroforme DSM 1552]
 gi|169292582|gb|EDS74715.1| hypothetical protein CLOSPI_01492 [Clostridium spiroforme DSM 1552]
          Length = 223

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 92/219 (42%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G     + +    E L     ++   I   L+  G    
Sbjct: 6   ILIIEDNNDINEMIYNYLNKNGFKC--YQAYSGTEGLLYCKDDNYDLIILDLMLPGMDGK 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S +P+I ++   SL + ++  + G  D + KP    E+LAR+    R+   
Sbjct: 64  SVLVKIREKSDIPVIVLTAKDSLNSKVEILEIGAYDYLCKPFELEELLARIHVQLRKSNK 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             N      + + +   D  +  ++  L R E  ILE L+ N  +   K +I++  +   
Sbjct: 124 KTNNMTFKKLTLDNQIYDAIINNQLLQLTRHEYYILELLIQNPKRVFTKQEIYAYAWN-D 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   ++  +  HIS +RKK+  +   D + +   +G+ +
Sbjct: 183 DYLSDDKTINVHISNIRKKISKQTDEDYIKTVWGIGFKM 221


>gi|330966499|gb|EGH66759.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 220

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G +L+     +    L +   E    +   L        
Sbjct: 3   LLLVEDDRAIGQGIRVALNTEGYTLDWLE--DGLSALHALRSEPFDLLLLDLGLPRMDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSR 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +    QG    +   E ++L  LM   GK V + ++ + +YG
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E  I  LRKKL      + + + R +GY ++
Sbjct: 181 WQDK-VESNTLEVLIHNLRKKL----STELIRTVRGVGYLLE 217


>gi|322807733|emb|CBZ05308.1| putative response regulator ArlR [Clostridium botulinum H04402 065]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++    +          +G  ++     +  E L+     +   I   ++  G   +
Sbjct: 6   ILLVEYEEQMSMFIEMELTHEGYKVDI--VYDGREALEKVENTEYQLILLDIMIPGLNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           E+ R IR  S VP+I ++    +   +   D G +D + KP    E+LAR+    R   +
Sbjct: 64  EVCRRIRQFSCVPIIMLTTKSGVSDKVLGLDVGANDYLTKPFAIEELLARIRVYGREKLV 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K   +  +   I + +        G    L ++E  +LE L+ N+   + + ++   ++G
Sbjct: 124 KSKFDEVKVKEIVMDNKTHQVWRSGREIELTKKEYDLLEKLLINKNIVLTRERLIEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   + NVV+  I  LR K+ N      + + R +GY I
Sbjct: 184 -YDYVGDTNVVDVFIRYLRSKIDNDSKEKLITTIRGVGYVI 223


>gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 228

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A +++        +G  +E     E           DV  ++  +   G    
Sbjct: 5   ILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLG--GY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R + +   V ++ ++    +   +   + G DD ++KP   RE+LAR+ A+ RRL+ 
Sbjct: 63  EVCRRLESRKGVGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRRLER 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        GP+RV    R  E+  +   L  +E  +L  L+++ G+   +  +  
Sbjct: 123 EGAPAPEGTEVILGPLRVRPSSRTAELGVKALDLTPKEFDVLALLVSHTGRVYTRDDLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++G+ D       V+ HI +LRKKL        + +   +GY 
Sbjct: 183 QVWGI-DYVGGTRTVDIHIQRLRKKLEPH--QSMLQTVYGIGYK 223


>gi|72161734|ref|YP_289391.1| response regulator receiver [Thermobifida fusca YX]
 gi|71915466|gb|AAZ55368.1| response regulator receiver [Thermobifida fusca YX]
          Length = 219

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +    +          +   D+  ++  L        
Sbjct: 4   ILIVEDEDRIASFVRKGLNANGFTSTVVDRAGAAIDYALTGNFDLMVLDLGLPDA--DGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   S++P+I ++   S++ T+   ++G DD + KP    E+LAR+    R   
Sbjct: 62  TVLRRLREEGSRLPIIILTARDSVRDTVTGLETGADDYMTKPFRFEELLARIRLRMRSAH 121

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       G + +    R          L  RE  +LE  + + G+ +++ QI S ++G
Sbjct: 122 NAETTVLHAGDLALDLRTRRASTPEATVDLTAREFALLELFLRHPGQVLSRQQILSHVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVV+  I  LRKK+    G   +++ R +GY +
Sbjct: 182 -YDYDPGSNVVDVFIRALRKKI----GAHRIETLRGMGYRL 217


>gi|53713474|ref|YP_099466.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60681720|ref|YP_211864.1| putative two component system response regulator [Bacteroides
           fragilis NCTC 9343]
 gi|253565462|ref|ZP_04842917.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|265763741|ref|ZP_06092309.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|52216339|dbj|BAD48932.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60493154|emb|CAH07935.1| putative two component system response regulator [Bacteroides
           fragilis NCTC 9343]
 gi|251945741|gb|EES86148.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|263256349|gb|EEZ27695.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
          Length = 224

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G S+   N  +    L      D+  ++  +       L
Sbjct: 4   ILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWELIRQEAFDLLILDIIMP--KMNGL 61

Query: 62  ELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL R+ R       P+I ++   + +  +   DSG DD + KP   +E+ AR+ AI RR 
Sbjct: 62  ELCRLYRQQYGYLTPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILRRG 121

Query: 120 KVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +  +     + +  + R    +     L  +E R+LEY M ++G  +++  +   ++
Sbjct: 122 REDSVQQLVCDDLVLNCNTRRARRKEVEIELTVKEYRLLEYFMTHQGMVLSRLTLLKDVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +     NVV+ +++ LR K+  +     + +    GY +
Sbjct: 182 DK-NFDTNTNVVDVYVNYLRGKIDKEHDKKLIHTVVGSGYIM 222


>gi|311069979|ref|YP_003974902.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870496|gb|ADP33971.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 237

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 96/230 (41%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  ++    L   +   ++ + D+  ++  L        
Sbjct: 4   ILLVEDDTRIASLLCGHLQKYGYHVQIAEKLNQIKEEFTAMKPDLVLLDINLPYF--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              R IR  S VP+I IS        +   + G DD + KP H   +LA++ ++ RR   
Sbjct: 62  YWCRQIRTISNVPIIFISARTDELNQVMAIEHGGDDYITKPFHLEVVLAKIKSVLRRTYG 121

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +   E G + ++ D  + E +       ++E ++L   +    K V + ++
Sbjct: 122 EYSPSISQESKVVEIGELYIYPDKYEAEWKNNRMSFSQKEFQLLSIFVKEHKKIVTRDEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             A++   D  V++N +  ++++LRKKL N    + + + R  GY  + N
Sbjct: 182 LEALWDEID-FVDDNTLTVNVNRLRKKLENAGLQEAITTIRGKGYKFEIN 230


>gi|167627435|ref|YP_001677935.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|241668005|ref|ZP_04755583.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876539|ref|ZP_05249249.1| two-component system response regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|167597436|gb|ABZ87434.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|254842560|gb|EET20974.1| two-component system response regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 228

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 12/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +G +     +G+ +   +  E  +    S   D+  ++  +  K    L
Sbjct: 3   LLLAEDDLNLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIK--TGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +R    +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+ 
Sbjct: 61  EVLRNVRNKGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K +    + G              G + P+ ++E  +L  L+ N G+ V KTQ+  
Sbjct: 121 TRSGKSTKEEIKFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   D+ ++ N +E H+  LRKK+      + + + R +GY
Sbjct: 181 EVYST-DKEMDTNTLEVHMHNLRKKI---NIPNFIQTIRGVGY 219


>gi|307823347|ref|ZP_07653576.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307735332|gb|EFO06180.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 223

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++     E    L ++   D+  ++  +  +     
Sbjct: 3   ILIVEDEKKTAAYLHKGLTEQGFIVDVGIDGEEGLLLATTIAYDLIILDVMVPLR--DGW 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +R    Q P++ ++   ++   +   + G DD + KP    E+LAR+ +I RR  
Sbjct: 61  SVLRELRRGGKQTPVLFLTARDAIDDRVKGLELGADDYLVKPFAFVELLARIRSILRRGP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +          G+   L  +E  +L   +    + +++T I   ++ 
Sbjct: 121 ARQAEHLALADLALDPIRHKAFRNGQRLDLSPKEFALLSLFLQRPAEVLSRTLIAEQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     + N+V+  I +LR+K+ +      + + R +GY ++
Sbjct: 181 VH-FDSDTNIVDVAIRRLRQKIDDPFPQKLLHTVRGVGYVLE 221


>gi|261406956|ref|YP_003243197.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283419|gb|ACX65390.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 235

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++D    +   +   ++   + +    L  +   D+  ++  L        
Sbjct: 4   ILVIDDEVAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDC--SGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L + I     VP+I +S    +   +   + G +D + KP  +RE+LAR+  I RR   
Sbjct: 62  DLCKEITGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +V + R     +    + R     G    L  +E +ILE L+    K   + 
Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILESLLKRPDKIFTRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++    +G +D   +   V+  I +LRKKL +       V +    GY +
Sbjct: 182 ELLQIGWG-YDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230


>gi|85706269|ref|ZP_01037363.1| two component response regulator [Roseovarius sp. 217]
 gi|85669042|gb|EAQ23909.1| two component response regulator [Roseovarius sp. 217]
          Length = 219

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++          DG +++    L+        A  D+  ++  L     + +
Sbjct: 3   ILLIEDDTVLGAAVRDQIASDGQTVDWVTRLDAAGAAVRGAAFDLILLDLMLPD--GRGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + +RA  +V P+I ++    +   ++  ++G DD + KP    E+ AR+ ++ RR  
Sbjct: 61  GFLKALRARGEVTPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYS 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   T GP+ +    R     G+   L  RE  + E  +A  G+ ++K Q+   +Y 
Sbjct: 121 GNPNPIVTHGPLDIDLAARSVHRGGKPVQLTAREWALFEAFLARPGQLLSKAQLEDKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  VE N +E H+S+LRKKL    G   V+++R LGY +
Sbjct: 180 AYDAEVESNTIEVHVSRLRKKL----GAGIVETERGLGYRL 216


>gi|309776080|ref|ZP_07671071.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916031|gb|EFP61780.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
          Length = 229

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +         ++   ++   +             D++ ++  L        
Sbjct: 3   ILVVDDEQEIAGLVEIYLKNENYDVDVCYTGTQALQNIQKHTYDLAILDVMLPD--MDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR     P+I ++        +     G DD + KP    E++ARV A  RR K 
Sbjct: 61  TICKTIRQKHTWPIIMLTAKEQDIDKITGLMIGADDYMTKPFQPLELVARVKAQLRRYKR 120

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N            + +  D     +  +   L   E RIL YL   +GK V+  ++++A
Sbjct: 121 YNVQQKAQELSYLGLVMNRDLHICRLNEKDVFLTPIEFRILWYLCERQGKVVSAKELYTA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           I+         N +  HI  +R+K+ ++      + +   +GY +
Sbjct: 181 IWQEEYLTSSNNTLMVHIRHIREKMHDRGEHPRYIQNVWGVGYKL 225


>gi|208779553|ref|ZP_03246898.1| response regulator receiver domain protein [Francisella novicida
           FTG]
 gi|208744514|gb|EDZ90813.1| response regulator receiver domain protein [Francisella novicida
           FTG]
          Length = 228

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 12/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +G +     +G+ +   +  E  +    S   D+  ++  +  K    L
Sbjct: 3   ILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDISMPIK--TGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R IR    +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+ 
Sbjct: 61  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K  N     G              G + P+ ++E  +L  L+ N G+ V KTQ+  
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   D+ ++ N +E H+  LRKK+      + + + R +GY
Sbjct: 181 EVYST-DKEMDTNTLEVHMHNLRKKI---NIPNFIQTIRGVGY 219


>gi|78186515|ref|YP_374558.1| two component transcriptional regulator [Chlorobium luteolum DSM
           273]
 gi|78166417|gb|ABB23515.1| two component transcriptional regulator, winged helix family
           [Chlorobium luteolum DSM 273]
          Length = 236

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 95/230 (41%), Gaps = 12/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G   +   + E      S    ++  ++  L   G   
Sbjct: 5   LILVVEDDRNLAKLVGYNLEKAGYKCQFSENGEDAFEQLSMRSFELILLDIMLP--GIDG 62

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            ++ R IR H     +P+I ++        +  F+ G+DD V KP   RE+  R+ A+ +
Sbjct: 63  FDVCRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLK 122

Query: 118 RLKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +           +G + V        + G    L   E ++L  L+  +G+  ++  +
Sbjct: 123 RDRRQGGVFRDALRSGGLDVDISRHAVTLDGRELVLTLMEFKLLVALLKRKGQAQSREML 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            S ++ + D  +    +++H+++LR+KL        + + R LGY  + +
Sbjct: 183 LSDVWDV-DRTINTRTIDTHVTRLREKLGTVGAK--IKTVRGLGYKFEED 229


>gi|49474029|ref|YP_032071.1| two-component system regulatory protein [Bartonella quintana str.
           Toulouse]
 gi|49239533|emb|CAF25890.1| Two-component system regulatory protein [Bartonella quintana str.
           Toulouse]
          Length = 222

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   +     +   +L S+   D   ++  L       +
Sbjct: 3   ILIVEDDRNLNHQLAEAVRSAGYVSDSAFDGQEAYFLGSTESYDAVILDIGLPL--LDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +    R     +P++ ++        +   D+G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SVVEKWRKEGHLMPVLMLTARDRWSDKVFGIDAGADDYVVKPFHLEELMARLRALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + + +      V G++  L   E R+L YLM + G+ V+KT++   +Y 
Sbjct: 121 GHATSALCCGAVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCGRVVSKTELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N VE  + +LR+KL    G D +++ R +GY +
Sbjct: 181 Q-DFDKDSNTVEVFVGRLRRKL----GVDVIETIRGMGYRV 216


>gi|88703724|ref|ZP_01101440.1| heavy metal response regulator [Congregibacter litoralis KT71]
 gi|88702438|gb|EAQ99541.1| heavy metal response regulator [Congregibacter litoralis KT71]
          Length = 230

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  +    +      L  +   D+  ++  L        
Sbjct: 3   LLVVEDEIKTGDYVQQGLTEAGFLVTLARNGLDGHHLAMTETFDLLVLDVMLPDV--DGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A  Q P++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVQSLREAGRQTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRST 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V    ++ +   + +          G    L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 VPVMTDQIKVADLTLDLPRHRATRAGRKINLSHKEFCLLELLVRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV++  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFEPKLIHTVRGMGYKLEV 223


>gi|194429158|ref|ZP_03061687.1| transcriptional regulatory protein CreB [Escherichia coli B171]
 gi|194412773|gb|EDX29066.1| transcriptional regulatory protein CreB [Escherichia coli B171]
 gi|323163220|gb|EFZ49052.1| transcriptional regulatory protein creB [Escherichia coli E128010]
          Length = 229

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 SSPSPVIRIGYFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|327441682|dbj|BAK18047.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 222

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++         +G      +       L      D++ ++  +       +
Sbjct: 3   ILVVDDDAFIRKLIGIHLKKEGFEALFASDGMEALNLLQQEPVDLAIVDVMMP--KMDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +     VP++ ++   +L      F +G DD + KP   +E+L RV AI RR + 
Sbjct: 61  TLTKNLVEIG-VPVLMLTAKTTLDDKEKGFLAGADDYMVKPFEPKELLFRVRAILRRFQK 119

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  ++ +   + +     + +V  +V  LP +E  +L  L +       + Q+   ++G 
Sbjct: 120 TERSQIKIANMLIDRQTYEVKVGEQVSLLPLKEFELLSILCSRPEVVFTRDQLMEQVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   ++  + +HI +LR +L        + + R +GY I+
Sbjct: 179 YDYDGDDFTLTTHIKRLRSRLEEVNAQVKIQTVRGIGYKIE 219


>gi|325264533|ref|ZP_08131263.1| phosphate regulon transcriptional regulatory protein PhoB
           [Clostridium sp. D5]
 gi|324030195|gb|EGB91480.1| phosphate regulon transcriptional regulatory protein PhoB
           [Clostridium sp. D5]
          Length = 230

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +G        G       ++        + + D+  ++  L       +
Sbjct: 6   ILIVEDDLALAEGLRMNMEMAGFQASAVYNVRDAFMQLEAEQADLLLLDINLPD--GNGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    +R    +P+I ++     +  +  F +G DD + KP H + ++ RV A+ RR + 
Sbjct: 64  DFAEKVRRMLNIPIIFLTARDMDEDMIAGFRAGADDYIIKPFHIQVLVERVRAVLRRYQP 123

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S    N+ +TG +++  +       G+   L   E ++LE    N G  + +  +   ++
Sbjct: 124 SMEVKNQIQTGHLQIDFESYTVLKSGKPLSLTPTEFKLLEKFCRNPGIVLTRQVLIDELW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                 V+E+ +   +S+LR K+ +   F  + +    GY 
Sbjct: 184 DNEGNYVDEHTLTIFVSRLRSKIADN-EFTYIKTVYGTGYR 223


>gi|238917552|ref|YP_002931069.1| two-component system, OmpR family, phosphate regulon response
           regulator PhoB [Eubacterium eligens ATCC 27750]
 gi|238872912|gb|ACR72622.1| two-component system, OmpR family, phosphate regulon response
           regulator PhoB [Eubacterium eligens ATCC 27750]
          Length = 222

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 99/223 (44%), Gaps = 5/223 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59
           +  +++D   +++       + G  +  F S +           D+  ++  L  + G  
Sbjct: 3   LIYIVEDDESIREIETIALKNSGHMVGAFGSSKEFFKKLDEILPDLVLLDVMLPDESGYD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++  R+  A  ++P+I ++   +    +   + G DD + KP    E++ RV A+ RR 
Sbjct: 63  IIKKLRLNSATKRLPVIMVTAKSTELDMIKGLEDGADDYIKKPFSVMELITRVKALLRRT 122

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +       + G I +  +     V G+   L  +E  +L YLMAN+   +++  I   ++
Sbjct: 123 ETDEAGVLDVGEIELNHERHVVTVSGKQVELTFKEYELLRYLMANKNIVLSRDSIVLKVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G  +   E   V+ HI  LR+KL +      + + R +GY I+
Sbjct: 183 GT-EFEGESRTVDMHIKTLRQKLGDAGS--RIRTVRNVGYVIE 222


>gi|229119327|ref|ZP_04248628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228664089|gb|EEL19629.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
          Length = 214

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++            +   +  +  E ++   ++    I   ++       E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVAS--DGLEGMKQFNKQSFDLILLDVMMPNLNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   + +
Sbjct: 60  KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N      + V  D     V     PL  +E  IL+ L+ N  K + +  I   I+G ++
Sbjct: 120 DNHFVFKELHVDGDAYKVYVNRVDVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A +  ++++H+  +RKKL        + + + +GY ID
Sbjct: 179 YAGDTRMIDTHMKNIRKKLD----IPYIKTVKGIGYKID 213


>gi|224543016|ref|ZP_03683555.1| hypothetical protein CATMIT_02210 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524041|gb|EEF93146.1| hypothetical protein CATMIT_02210 [Catenibacterium mitsuokai DSM
           15897]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       ++  ++  + S +         + D++ ++  +        
Sbjct: 3   ILVVDDEKEITDLIQIYLENENFTVYKYYSSQDVLRDIDDLKIDLAILDVMMPD--MDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR   + P+I ++        ++    G DD V KP    E++ARV A  RR K 
Sbjct: 61  SLCNTIRRKYKFPIIFVTAKVEDIDKINGLSIGADDYVTKPFQPLELVARVKAQLRRYKN 120

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N     N  +   IR+ +D R+     +   L + E  IL  L  ++G  V    +F  
Sbjct: 121 YNEKEEKNEIDFRGIRINNDTREFYFNEKKIELTKTEFAILWELCLHKGNVVKSDDLFLK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++G      + N +  HI  LR+K+ +       +     +GY I+
Sbjct: 181 VWGEDYYKRDNNTIMVHIRHLREKMHDGGRNPKYIKKVYGVGYKIE 226


>gi|213970103|ref|ZP_03398235.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301381459|ref|ZP_07229877.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061114|ref|ZP_07252655.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato K40]
 gi|213925207|gb|EEB58770.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A+     +      G+ ++  ++         S   D+  ++  L       L
Sbjct: 4   ILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPE--MDGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA     P++ IS    +   +     G DD + KP    E+ ARV  + RR  
Sbjct: 62  TIVTHLRAQGISTPILMISALSDVDERVRGLRGGGDDYLPKPFASDEMAARVEVLLRRSN 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + +    R+    GE   L   E ++LE+LM N G+ + +  IF  +
Sbjct: 122 PVSAAKTVLQVADLELNLISREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +      N+++ HI +LRKK+        + + R  GY I
Sbjct: 182 WG-YHFDPGTNLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223


>gi|293189340|ref|ZP_06608063.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus
           F0309]
 gi|292821803|gb|EFF80739.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus
           F0309]
          Length = 225

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +      G +G  +    +    E L      D+  ++  L       L+
Sbjct: 5   LLVEDDPAISEPLARALGREGYDVRAHAT--GAEALADVRGVDLVVLDLGLPD--MDGLD 60

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           + R IR+    VP++ ++        +   D+G DD V KP    E+LARV A+ RR   
Sbjct: 61  VAREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +        IR+        V      L  +E  +L  L+   G  VA+  +   ++G
Sbjct: 121 EPAEGELRAQDIRMDVAAHRAFVGDVELSLTAKEFDLLRVLLREAGSVVARDTLMREVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             D       ++ H+S LR+KL  +      + + R +G+  +
Sbjct: 181 -SDPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRFE 222


>gi|257064017|ref|YP_003143689.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791670|gb|ACV22340.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 228

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 108/223 (48%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +      +  D+G  ++  ++ +       +   DV  ++  L        E
Sbjct: 4   LIVEDDVRLASALKHILEDNGYLVDMVHNGQSGYDYAVAGIYDVVILDVMLP--KMNGFE 61

Query: 63  L-PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           +   + RA+   P++ ++   ++   +   DSG DD + KP    E+LA + A+ RR  +
Sbjct: 62  VVASLRRANLDTPVLLLTARDAIPDKITGLDSGADDYMTKPFSPAELLAHLRALTRRQGQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V   + E G + +  +  D     +   L  +E  I   LM+N G+ ++K Q+ S ++G+
Sbjct: 122 VVFEKLEAGDLSLNLESHDLSSGQKTINLSFKEYEIANILMSNAGQIISKEQLISKVWGV 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +   ++N VE++IS LRKKL+       +D+ R +GY ++ +
Sbjct: 182 -ESTADDNNVEAYISFLRKKLKFLGSSVSIDTVRRVGYKLNVD 223


>gi|153829425|ref|ZP_01982092.1| transcriptional regulator [Vibrio cholerae 623-39]
 gi|148875079|gb|EDL73214.1| transcriptional regulator [Vibrio cholerae 623-39]
          Length = 224

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHV--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + IRA    V ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  ALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|90413072|ref|ZP_01221069.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum 3TCK]
 gi|90325915|gb|EAS42361.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum 3TCK]
          Length = 224

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++     +   + G  ++   + E   +   +   D++ ++  L  +    +
Sbjct: 3   ILIVEDDQILSHHLKSQLSELGHQVQCAGTAEEGLFFAQNYPNDIAVVDIGLPDR--DGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R    ++P++ ++   + Q  +   ++G DD + KP    E++AR++A+ RR  
Sbjct: 61  SLIKDMRKKGLRLPVLILTARANWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G IRV    +   V   +  L   E  +LEYLM +  + V+K ++   +Y 
Sbjct: 121 GFVKPEMSAGDIRVDLLAKQVFVGEALLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  IS+LRKK       +P+ + R  GY  +
Sbjct: 180 -EDQEGDPNTIEVMISRLRKKFITTGQDNPITTIRGQGYIFE 220


>gi|66044744|ref|YP_234585.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255451|gb|AAY36547.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
          Length = 228

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D             + G +++   +         +   D+  ++  +   G    
Sbjct: 3   LLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMP--GLDGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   Q VP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EVIRRLRTVGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +       + G ++V    R     G+   L  +E  +LE LM  +G+ ++K+ I S +
Sbjct: 121 SNLPVQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIASQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + +   + NV+E  I +LR K+ +      + + R +GY +D
Sbjct: 181 WDM-NFDSDTNVIEVAIRRLRAKIDDDFEAKLLHTCRGMGYMLD 223


>gi|323483412|ref|ZP_08088800.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum
           WAL-14163]
 gi|323691088|ref|ZP_08105369.1| regulatory protein VanR [Clostridium symbiosum WAL-14673]
 gi|323403266|gb|EGA95576.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum
           WAL-14163]
 gi|323504857|gb|EGB20638.1| regulatory protein VanR [Clostridium symbiosum WAL-14673]
          Length = 246

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 94/236 (39%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++G        G  +  F + +  E L+   RE++      ++      +
Sbjct: 12  ILLVEDDKEIREGIEIFLRGQGYRV--FQAADGVEGLEILEREEIHLAIVDIMMPRMDGV 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R H   P+I +S        +   + G DD + KP    E+LARV +  RR   
Sbjct: 70  TMVIRLREHYDFPVIFLSAKSEEVDKIMGLNMGADDYITKPFTPMELLARVNSHLRRYNR 129

Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                          ++N    G + +  D  +  V GE   L   E +IL  LM N G 
Sbjct: 130 FMALLNRKEEKDGGENSNIYRIGGLELNEDTVELMVDGEPAKLTPMEFKILSLLMKNPGH 189

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             +   I+  ++   + A+  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 190 VFSADDIYERVWN--ERAINTDTVMVHVRNIREKIELDPKKPKYLKVVWGVGYKIE 243


>gi|309389284|gb|ADO77164.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 225

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++    +   ++    E  N  +    L  +   D+  ++  L        
Sbjct: 4   ILIVEDEAKIRKLIKSYLAEEYKLKEAANGKKALS-LFKNNNFDLIILDLMLP--KISGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I ++   S +  +  F+ G DD + KP   RE+L RV A+ RR + 
Sbjct: 61  EVCQNIRQISDIPIIMLTAKSSEEHKIAGFNYGADDYLTKPFSPRELLVRVKALLRRSQN 120

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G  ++F +            L   E +IL  L+ N  + +++ Q+   +
Sbjct: 121 VKKANVIALNKGEYKIFPEKMIVTKDDLDCELTTTEFKILMALINNANQVLSREQLADIV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            GL + +  +  +++HI  +RKK+  KL  D  + +    GY  
Sbjct: 181 MGL-EFSGFDRTIDAHIKNIRKKM--KLEKDQYIITVYGAGYKF 221


>gi|119898000|ref|YP_933213.1| osmolarity response regulator [Azoarcus sp. BH72]
 gi|119670413|emb|CAL94326.1| response regulator [Azoarcus sp. BH72]
          Length = 248

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD A +++       + G +++        +        D+  ++  L   GE  L 
Sbjct: 13  LLVDDDARLRELLSRYLQEQGFAVKAVVDAPMMDRALHREHFDLIVLDLMLP--GEDGLA 70

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R A + +P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 71  ICRRLRGAENHIPIIMLTAKGDDVDRIVGLEMGADDYLPKPFNPRELVARIQAVMRRQPH 130

Query: 122 S--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S        +     G +RV    R     GE   L   E  +L+ L+ +  + +++ ++
Sbjct: 131 SLPGAPTPEDEIVVFGRVRVNLGTRALTRDGEEIQLTTGEFSLLKVLLQHPRQPLSRDKL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
                G  +  V +  ++  +S+LRK + +       + +    GY  
Sbjct: 191 MELARGR-EYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVF 237


>gi|309390235|gb|ADO78115.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 95/221 (42%), Gaps = 8/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          +   +    + E        A++++  +   ++   E  LE
Sbjct: 7   LIIDDDPHIIKILQDYLKFEDFKVRVAENTEI--GYSILAKDEIDLLLLDIMLPNENGLE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
             + +R    + +I +S     Q  +   + G DD + KP   +E++AR+ A+ RR    
Sbjct: 65  FCQRVRKDFDLAIIFLSAKTEAQAKITGLELGADDYIGKPFSPQEVIARIKAVLRRYDSG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N  + G +++       + +GE   L  +E  +L +L  N  K   +  +  A++G
Sbjct: 125 AAADNCLQFGALKINKQEHYLKYKGENIDLTPKEFSLLWHLAQNPKKVFRRKNLLKAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   +   V++HI  LR+KL        +++   +GY  
Sbjct: 185 -YDYFGDVRTVDTHIKSLRQKLGEAAAA--IETVWGVGYKF 222


>gi|296170765|ref|ZP_06852337.1| two component response regulator IrlR [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894580|gb|EFG74317.1| two component response regulator IrlR [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 222

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A +          +G  +    +             DV  ++  L   G    E
Sbjct: 4   LLVEDEARLSATLARGLKAEGFVVVAVGTGVDGLREAVDNNFDVVILDIMLP--GHSGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +RA +   P++ ++         D FD G DD + KP   R ++AR+ A+ RR + 
Sbjct: 62  VLRRMRARNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGVP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +       +       L  RE  +LE+LM N+   V K  I   ++  
Sbjct: 122 QRPAVLTAGSLLLDPARHSVQRGANPITLTPREFGVLEFLMRNKDMVVTKADILRNVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + NVVE ++  LR+K+    G + +++ R +GY +
Sbjct: 182 HYHGPD-NVVEVYVGYLRRKIDIPFGTNTIETIRGVGYRL 220


>gi|291521248|emb|CBK79541.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++       + G   EGF++        S     +  ++  L       L
Sbjct: 4   IYILEDDLNIQEIEAYALKNSGYQTEGFDNAREFFKKVSERVPSLLLLDIMLPDA--DGL 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R +R      ++P+I ++   S    +   D G DD + KP    E+++RV A+ RR
Sbjct: 62  DVLRKLRSMPETKKLPIILVTAKTSEIDKVKGLDVGADDYITKPFGIMELISRVKALLRR 121

Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +     G + +  +     V  +V  L  +E  +L+ LM+N G   A+  I   
Sbjct: 122 SAYVEEKKFLTLGNVFMDDEKHAVYVSDQVCELTYKEYELLKLLMSNAGIVTARDTIMER 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I+G+ D   E   ++ HI  LRKKL        + + R +GY +
Sbjct: 182 IWGI-DFEGESRTLDMHIKTLRKKLGEAGS--MIKTVRNVGYIM 222


>gi|241766482|ref|ZP_04764351.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241363311|gb|EER58847.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 224

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 112/225 (49%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG +      G  ++   S  E +  L ++   D+  ++  L       
Sbjct: 3   ILIAEDDQVLADGLLRTLRASGAVVDHVASGSEADAALMTNNEFDLLILDLGLP--KMHG 60

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +R+  S +P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  LEVLKKLRSRGSALPVLILTAADSVEERVKGLDFGADDYMAKPFSLQELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI- 177
           +  +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGGTSSAIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180

Query: 178 -YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +G   E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 EWG---EEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220


>gi|187923506|ref|YP_001895148.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
 gi|187714700|gb|ACD15924.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEIKTGTYLRKGLTEAGFIVDWVEDGLTGQHRALTEDYDLIVLDVMLP--GQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R      ++ ++    +   +   + G DD + KP    E+LARV +I RR + 
Sbjct: 61  TVLKNLRRTHSTSVLLLTARDEVDDKVRGLNMGGDDYLVKPFDFAELLARVRSILRRGQT 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + +    R     G++  L  +E  +L  LM  +G+ + ++ I S ++ +
Sbjct: 121 RDAASLQVANLVLDLTRRKATRHGDMILLTAKEFALLWLLMRRQGEILPRSTIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIRRLRAKVDDNYEPKLIHTVRGMGYVLE 220


>gi|254229759|ref|ZP_04923167.1| transcriptional activator protein CopR [Vibrio sp. Ex25]
 gi|151937726|gb|EDN56576.1| transcriptional activator protein CopR [Vibrio sp. Ex25]
          Length = 232

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 101/237 (42%), Gaps = 27/237 (11%)

Query: 2   FVLIDDR---------ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++++D           L++ GY+     DG  ++G        +  +S   D+  ++  
Sbjct: 5   ILIVEDEHKAGEYLQKGLIESGYVVDLVHDG--VDGL-------YHATSEEYDLILLDIM 55

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L        ++   +R+     P+I ++    ++  +  F+ G +D V KP    E+LAR
Sbjct: 56  LP--KLDGWQVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLAR 113

Query: 112 VAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           +  ++R      +  S        + +    R     G+   L  +E  +LE LM   G+
Sbjct: 114 IQNVFRHHISAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQ 173

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +++T I S ++ + +   + NV++  + +LR K+        + + R +GY ++ +
Sbjct: 174 VLSRTTIASLVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLEES 229


>gi|318061543|ref|ZP_07980264.1| two-component system response regulator [Streptomyces sp. SA3_actG]
          Length = 240

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 99/233 (42%), Gaps = 23/233 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           + ++D  ++++         G  +    + L+  E  ++ A  D++ ++  +   G   +
Sbjct: 14  LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGA-PDIALLDVMVP--GMDGV 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   
Sbjct: 71  SLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGH 130

Query: 122 SN--------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           +                    G + V ++G +    GE   L   E R+L    A  G  
Sbjct: 131 AGGGARQAVEEEAAAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTV 190

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 191 LSRDRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 238


>gi|94968685|ref|YP_590733.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550735|gb|ABF40659.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 98/218 (44%), Gaps = 4/218 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         ++  +++  +  E  + +      D+  ++  L        
Sbjct: 3   ILVVEDDAPLAKFVAKGLEEEHYAVDTVHDGEQAKSMACEVEYDLVILDLNLP--KLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + + +R H + P++ ++    L+  +   D G DD + KP    E+ ARV A+ RR + 
Sbjct: 61  GVLQQVRDHKRCPILVLTGRTRLEDRVRVLDGGADDCLLKPFSFAELSARVRALLRRGVS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +     + +    R     G    L  +E  +LEYLM N G+RV +T I   ++ L
Sbjct: 121 AAQFKLRVADLELDRVQRTVARSGRRIELTSKEFALLEYLMRNAGRRVTRTMIIEHVWNL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                  NVV+ +++ LR+K+ ++     + + R +GY
Sbjct: 181 K-FDTGTNVVDVYVNYLRRKVDSEFPTKLIGTVRGVGY 217


>gi|332162529|ref|YP_004299106.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666759|gb|ADZ43403.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330860750|emb|CBX71041.1| transcriptional regulatory protein cpxR [Yersinia enterocolitica
           W22703]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G + E    L  +E +  +   + +A+   ++      +
Sbjct: 3   ILLVDDDVELGSMLREYLSGEGFTAE--LVLTGKEGIDGALSGNYTALILDIMLPDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R +R  S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 61  DVLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDE 120

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R  E QG+ F L   E  +LE L+ +  + V K ++ 
Sbjct: 121 HPDVSSGDDGVITHGDLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPDRVVTKDELS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 DKGLGRPREAYD-RSVDVHISNIRQKLAALPGSTLNIETVRSIGYRI 226


>gi|312961965|ref|ZP_07776462.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311283775|gb|EFQ62359.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 223

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 88/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +  +    + G S                   DV  ++  +        
Sbjct: 3   ILVVEDEPKAGNYLLNGLQELGYSASLARDGVDGLHQALETPFDVIVLDVMMP--KMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  +  P++ ++    +   +   + G DD + KP    E++AR+  + RR  +
Sbjct: 61  EVLRRLRKETDTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGPI 120

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +     +++    R     G    L  +E  +L     ++ + ++++ I S ++ +
Sbjct: 121 REEEQLHIADLQIDVLKRRVTRAGTRITLTNKEFALLHLFATHQDQVLSRSLIASRVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  + +LR K+ +      + S R +GY  D
Sbjct: 181 -NFDSDTNVVDVAVRRLRLKVDDPFQLKLIHSVRGIGYRFD 220


>gi|296506631|ref|YP_003667865.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296327218|gb|ADH10145.1| Two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 226

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++     F  DG  +      +    L +    ++S +   ++        
Sbjct: 5   LIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMDGWS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR +S VP+I ++       TL  F+ G DD V KP     +LAR   +++     
Sbjct: 65  VCRRIRKNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRLFKDTNQQ 124

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      IR+    R   + G+       E  IL  LM ++ + + + Q+ + I+G
Sbjct: 125 VQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLTREQLITNIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   ++  + +H+  +R KL  K     + +    GY  + 
Sbjct: 185 -YDYDGDDKTLTAHMRNVRLKLGEK--AKHIITVVRTGYKFEV 224


>gi|325679466|ref|ZP_08159046.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324108753|gb|EGC02989.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 224

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A + D    L   +G   +  ++    E L +   E VS I   L+  G    
Sbjct: 4   ILIIEDDAGINDMLRVLLRQNGY--DTISAYSGTEGLLAHGEE-VSLILLDLMLPGLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + + ++    VP+I  S    +   +D F  G DD V KP H+ E+LAR++A  R +  
Sbjct: 61  AVIKGLKEKKNVPVIVTSAIHDVSKKVDLFALGADDYVTKPFHNEELLARISARLRNVLP 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +      I +          G    L + E  +LE  M +  +   K++I+  ++
Sbjct: 121 EQTKGDVLTYKDIILNKSEHTVSCHGTAVELSKHEFALLELFMESPKRTCTKSRIYDTVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             ++ + ++N +  HISKLRKKL+      D +++   +GY +
Sbjct: 181 D-YENSADDNTLNVHISKLRKKLKECSPDEDYIETVWGIGYRL 222


>gi|146312332|ref|YP_001177406.1| DNA-binding transcriptional regulator BaeR [Enterobacter sp. 638]
 gi|145319208|gb|ABP61355.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 240

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I      G +    +  +           ++  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAAGYAPSLISHGDQVLPYVRQTPPNLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S+VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                      P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQVLDAESPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNQLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL         + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDADQSFIRAVYGVGYRWEAD 235


>gi|262392415|ref|YP_003284269.1| putative two component response regulator transcription regulator
           protein [Vibrio sp. Ex25]
 gi|262336009|gb|ACY49804.1| putative two component response regulator transcription regulator
           protein [Vibrio sp. Ex25]
          Length = 230

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 101/237 (42%), Gaps = 27/237 (11%)

Query: 2   FVLIDDR---------ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++++D           L++ GY+     DG  ++G        +  +S   D+  ++  
Sbjct: 3   ILIVEDEHKAGEYLQKGLIESGYVVDLVHDG--VDGL-------YHATSEEYDLILLDIM 53

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L        ++   +R+     P+I ++    ++  +  F+ G +D V KP    E+LAR
Sbjct: 54  LP--KLDGWQVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLAR 111

Query: 112 VAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           +  ++R      +  S        + +    R     G+   L  +E  +LE LM   G+
Sbjct: 112 IQNVFRHHISAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQ 171

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +++T I S ++ + +   + NV++  + +LR K+        + + R +GY ++ +
Sbjct: 172 VLSRTTIASLVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLEES 227


>gi|228933303|ref|ZP_04096159.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826464|gb|EEM72241.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 232

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GMDGF 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 65  QVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V + +     +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKTHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMDQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|227889541|ref|ZP_04007346.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227850019|gb|EEJ60105.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 242

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   +          +     +EG       + L  +  ED  AI   L+     
Sbjct: 4   ILIIEDEKNLARFVELELRHEKYETQVEG----NGRKGLDLALNEDFDAILLDLMLPDLN 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+
Sbjct: 60  GLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRV 119

Query: 120 KVS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++                   + + +  R          L +RE  +L  L+ N+   V 
Sbjct: 120 QIEKRAMGDTMGVQKVIHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVT 179

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 180 REQLLNKIWGP-ESKIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYMV 229


>gi|260587571|ref|ZP_05853484.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|331084554|ref|ZP_08333654.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541836|gb|EEX22405.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|330401104|gb|EGG80698.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 237

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 91/233 (39%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G           +  F + +  E L+   +E++      ++      +
Sbjct: 6   ILIVEDDKDIREGVAIYLKSQSYEV--FMAADGIEGLEVLEKEEIHLAIVDIMMPRMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R     P+I +S        +   + G DD V KP    E++ARV +  RR + 
Sbjct: 64  TMTIKLREKHDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQMRRYRK 123

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       ++     G + V  +  +  V      +   E +IL  L+ N G+  +
Sbjct: 124 FMEKLQAKESERTDTIYTIGGLEVNENTFEVRVDDTPVKMTPMEFKILLLLIKNPGRVFS 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             +I+  ++   + A+    V  H+  +R+K+  N      +     +GY I+
Sbjct: 184 ADEIYERVWN--ERAINTETVMVHVRNIREKIEINPKEPKYLKVVWGVGYKIE 234


>gi|169826231|ref|YP_001696389.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990719|gb|ACA38259.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
          Length = 223

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + +    L +    D++ ++  +   G    
Sbjct: 3   ILVVDDDVHILQLVNIYLTREGYQVLRAENAQQALALLNGNLPDLAVVDVMMP--GMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
            L   +     +P++ ++    L+     F +G DD V KP   +E+L R+AAI RR+ K
Sbjct: 61  TLTETLTQDYDIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRRMDK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    + G + +     +  +  E   LP +E  +L  L +   +   ++ I   ++G 
Sbjct: 121 KNQITIQVGQLVIDRRSFEVIIGEETLILPLKEFELLALLASRPNQVFTRSYIMEQVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  + +H+ ++R++L        + + R +GY ++
Sbjct: 180 YDYDGDEQTLNTHVKRVRERLNRFDTAVEIITVRGVGYKLE 220


>gi|81428113|ref|YP_395112.1| two-component response regulator transcriptional regulator
           [Lactobacillus sakei subsp. sakei 23K]
 gi|4104599|gb|AAD10261.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609754|emb|CAI54800.1| Two-component system, response regulator (possibly involved in
           phosphate regulation) [Lactobacillus sakei subsp. sakei
           23K]
          Length = 237

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +   +           +    + D   ++  L       +
Sbjct: 4   ILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLP--KLDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + IR    + P++ ++   +    +   + G DD V KP   REI+AR+ AI RR  
Sbjct: 62  AVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTT 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + ++     G + V       +       L  +E  +L Y M    K  ++ +
Sbjct: 122 QPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSREK 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           + +A++G FD   E  +V+  +S LR+K+ +       + + R  GY ++
Sbjct: 182 LLNAVWG-FDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLE 230


>gi|309778021|ref|ZP_07672962.1| DNA-binding response regulator RegX3 [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914211|gb|EFP60010.1| DNA-binding response regulator RegX3 [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D   +  G +     +G  +   +  +           D+  ++  L        +
Sbjct: 4   LFVEDDQAIAMGLVYTLKKEGYEVVWCDCKQAALQQLHRETFDLLLLDVGLPD--GSGYD 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           +    ++   VP++ ++        +   D G DD + KP    E+L+R+ ++ RR  + 
Sbjct: 62  ICTYAKSRQDVPVLFLTALDDEGNVVMGLDMGGDDYITKPFRINELLSRIRSVQRRYHRQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   + ++        + E   L   E R+L  L+ +  + ++++Q+   I+ + 
Sbjct: 122 EEDIIQIQYLSIYPKQGKVYKEQEEILLTALEYRLLMVLVNHPQQVLSRSQLLEGIWDVA 181

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            + V +N +  ++ +LR+KL R+      + + R LGY ++
Sbjct: 182 GDFVNDNTLSVYMKRLREKLERDPKNPTIIVTVRGLGYRLE 222


>gi|293376811|ref|ZP_06623031.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292644563|gb|EFF62653.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 230

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G  ++  +  E           DV  ++  L  K     
Sbjct: 5   ILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKK--DGF 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + +RA +    ++ +S        +   D G DD + KP   RE+++++ AI RR  
Sbjct: 63  AVCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKE 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + + N      I++ +   +  V G+V     +E  +LE+L+ ++G+ +++  +  
Sbjct: 123 VLSSEKNKNYLGYRSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G F+   +  +V+ HI K+R+KL++      + + R +GY ++
Sbjct: 183 RLWG-FEYDGDTRIVDVHIFKIREKLKDYGIK--IKTIRGIGYMLE 225


>gi|240146794|ref|ZP_04745395.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257201080|gb|EEU99364.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 237

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 94/235 (40%), Gaps = 20/235 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEKV 60
           +++DD + + D       ++  ++  + S   +  L+   S + D++ ++  L       
Sbjct: 6   LVVDDESEIADLIEMYLQNENYTV--YKSYTAQSALEYIESEKLDLAILDVMLPD--IDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ + IR     P+I ++       T+     G DD V KP     ++ARV A  RR K
Sbjct: 62  FQICKKIREKYTYPVIMLTAKDGEVDTITGLTLGADDYVTKPFKPLALMARVKAQLRRYK 121

Query: 121 VSNNRAE-------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
             N+ +E             +  + +        V G    L   E +IL+ L   +G  
Sbjct: 122 KYNSFSEPMDSEGKETIITTSNGLVMNISAHVCIVDGTSVELTPTEFKILQTLCEKKGLA 181

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           V   ++F +++         N +  HI  LR+K+ +       + +   +GY ++
Sbjct: 182 VMSEELFRSVWPDEFYDKNSNTITVHIRHLREKMGDTTEEPRYIKTIWGVGYKVE 236


>gi|213964807|ref|ZP_03393006.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
 gi|213952343|gb|EEB63726.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
          Length = 224

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G   +     +  E ++++ RE+   I   L+  G   +
Sbjct: 5   ILVVDDDPAIAEMLTMVMEREGF--DTVVVDDGLEAVKAAERENPDLILLDLMLPGMSGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S VP+I ++        +   +SG DD V KP   +E++ARV A  RR + 
Sbjct: 63  DVCRTVRETSAVPIIMLTAKTDTVDVVLGLESGADDYVTKPFKPKELVARVRARLRRQED 122

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S +   E G + +   G      G+   L   E  +L  L +   +  ++ ++   ++G 
Sbjct: 123 SPSETLEVGDLTIDVPGHAVFRDGKEISLTPLEFDLLHALASRPKQVFSRDELLEKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +    +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 182 YQHTSDTRLVNVHVQRLRSKIELDPENPQIVLTVRGVGYK 221


>gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88]
 gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88]
          Length = 222

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 107/222 (48%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  ++   + +  E +      D+  ++  L        
Sbjct: 3   LLIVEDEKQLLESIAEGLRLSGYVVDIAENGKEAEEMCFVEDYDLVILDINLPL--MDGF 60

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR H++   +I ++    ++  +   D G +D + KP H  E+ AR+ ++ RR  
Sbjct: 61  SVLKSIREHNKTVNIIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRRKT 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V  +     GPI+  ++ R  ++  E F L ++E  ILEYL+ N+ + V++ +I   ++G
Sbjct: 121 VQQDAVIVCGPIKFDTNSRTVQIHDENFKLTKKETTILEYLILNKSRIVSQEEILDHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              + +  N V  H+S LR+KL++K G + + +    GY ID
Sbjct: 181 DSVDFL-SNTVRVHMSTLRRKLKDKAGCNIIKNVIGEGYIID 221


>gi|30248361|ref|NP_840431.1| response regulator [Nitrosomonas europaea ATCC 19718]
 gi|30138247|emb|CAD84255.1| possible Response regulators consisting of a CheY-like receiver
           domain and a HTH DNA-binding [Nitrosomonas europaea ATCC
           19718]
          Length = 223

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +LV  G      + G +++   +    E        D++ ++  L       L
Sbjct: 3   ILVVEDDSLVASGIKQGLTNAGYTVDVARNAASAERHLREENFDLAVVDIGLPD--IDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R     +P++ ++   S++ T+   D G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TLVQRLRHRKMCLPVLVLTARGSMEDTIAGLDIGADDYMTKPFRLPELIARIRALIRRAH 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   +   + + +      +  +   L RRE  ILE L+    + V+K ++   + G
Sbjct: 121 SITSTELQHDRLVLNTGSYTATLNDQPLLLTRREWTILETLLMASPRVVSKDKLLQNLTG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D+ +  N +E H+S+LR K+    G   + + R +GY ID
Sbjct: 181 -WDKNITPNAIEVHVSRLRAKI--APGGIEIRTVRGIGYRID 219


>gi|325957156|ref|YP_004292568.1| DNA-binding response regulator [Lactobacillus acidophilus 30SC]
 gi|325333721|gb|ADZ07629.1| DNA-binding response regulator [Lactobacillus acidophilus 30SC]
          Length = 226

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +++  +            F +           + D+  ++  L    E   
Sbjct: 4   IWCVEDDESIREIEMYTLQTMNFKTRSFENGTSFFKALKEKKPDLVILDLMLPD--EDGS 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R IR +S     P+I  S   +    +   DSG DD + KP    E+++RV A+ RR
Sbjct: 62  DILRRIRGNSATKELPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRR 121

Query: 119 LKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +      R E   +++     +  V GE   L  +E  +L+ L+ +     ++ +I   
Sbjct: 122 TQRREEKDRIERDGVKILLKRHEVLVNGEEIELTLKEYGLLKLLITHPETVFSREEIMDQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           I+       E   V+ H+  LR+KL        +++ R +GY 
Sbjct: 182 IWETG-FYGETRTVDVHVRTLRQKLSEAG--KHIETVRGVGYR 221


>gi|307313311|ref|ZP_07592935.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307320756|ref|ZP_07600167.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306893574|gb|EFN24349.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899324|gb|EFN29959.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 232

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G ++    +             DV  ++  L        E
Sbjct: 6   LIVDDDTRLSAMLSDYLSGNGYTVHTAATATAGIAELGRRTPDVVILDVMLPDF--DGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IRA S VP++ ++        +   + G DD + KP + RE+LAR+ AI RR   S
Sbjct: 64  TCRRIRAVSDVPVLMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRRRNGS 123

Query: 123 NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              A T   G + +    R   + G    L   +  +L  L  N G+ +++ Q+  A+ G
Sbjct: 124 AAVARTLRFGRLEIDPGSRSVRIDGRECTLTSYQFDVLVALAENPGRTLSREQLMDAVKG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              +A +   ++ HIS++R  +  +      + + R  GY  
Sbjct: 184 EELDAFD-RSIDVHISRIRAAIESDPKHPRRIITVRGAGYVF 224


>gi|282882917|ref|ZP_06291522.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
           315-B]
 gi|300813311|ref|ZP_07093666.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297328|gb|EFA89819.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
           315-B]
 gi|300512582|gb|EFK39727.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 223

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    +++  + ++     D   I   ++       
Sbjct: 4   ILVVDDEKKIREVIKTYAEFEGHEV--VEAVDGIDAIEKVKENDFDVIVMDIMMPRLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+    +P++ +S        L  F+ G+DD V KP   +E++AR+  I  R   
Sbjct: 62  SSYKEIKKIKDIPVLMLSARGEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNNK 121

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  N+      +++   GR   V GE   L  +E  +L +L+ N    +++  + + ++G
Sbjct: 122 TTNNDNLIFQGLKIDLGGRVVFVDGEKIDLTPKEYDLLVFLVKNENIALSRETLLNKVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   ++  V++HI  LR  +++      + + R +GY  D
Sbjct: 182 -YDFFGDDRTVDTHIKMLRNSIKDY--RKFIVTVRGVGYKFD 220


>gi|218132654|ref|ZP_03461458.1| hypothetical protein BACPEC_00513 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992380|gb|EEC58383.1| hypothetical protein BACPEC_00513 [Bacteroides pectinophilus ATCC
           43243]
          Length = 230

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 104/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   + +  +A+   +   ++  ++  +  +W  +   +D   I   ++      
Sbjct: 3   LLLAEDEKELSNALVAVLKANNYIVDAVYDGADAYDWAVT---DDYDGIILDIMMPKRNG 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++   +R    + P++ ++    ++  +   D+G DD + KP   +E+LAR+  + RR 
Sbjct: 60  IDVLAQLRKDGIKTPVLLLTAKSEVEDRVLGLDTGADDYLTKPFAMKELLARIRVMTRRT 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + +  +   +++       E  G    L  +E ++LE LM N+G+ V+  Q    ++
Sbjct: 120 ASYAPDTLDVDGMKLNRGNCMLEYNGGEVQLVNKEYQMLEMLMRNKGRLVSSEQFIEHVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++  +  NVV  +IS LR+KL        + + R LGY ++
Sbjct: 180 G-YETDINVNVVWVNISNLRRKLTQINAPVEIKAVRGLGYRLE 221


>gi|172036610|ref|YP_001803111.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171698064|gb|ACB51045.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 231

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 93/231 (40%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            +L++D   + +            ++     E    L         +   +  L      
Sbjct: 3   ILLVEDENDLGNAIKRALIQHNYIVDWAQDGEEANDLIEIGLNLYTIGIFDWLLP--KIS 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            ++L + IR  +  +P++ ++     +  +   D+G DD + KP    E+LAR+ A+ RR
Sbjct: 61  GIDLIKKIRQQNSFLPILMLTAKDREEDKVIGLDAGADDYLVKPFGMAELLARLRALQRR 120

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              ++  +   G I +                +   L  +E ++LEY M +  + + + Q
Sbjct: 121 FPTINPQKLTVGKITLDYSNYTIYFQEETGDNKPLSLTNKEFQLLEYFMKHPNQIITRDQ 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           I S ++   +E +  NVV + I  LR+KL      + +++   LGY    N
Sbjct: 181 ILSQLWEWGNEPM-SNVVAAQIRLLRRKLEPSGMENCIETVYGLGYRFLVN 230


>gi|296102314|ref|YP_003612460.1| two-component system, OmpR family, copper resistance phosphate
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056773|gb|ADF61511.1| two-component system, OmpR family, copper resistance phosphate
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEIKTGEYLSKGLTEAGFVVDRADNGLTGYHLAMTADYDLLILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R A   +P++ +S   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIIRMLRSAGKGMPVLLLSALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ ++     + +    R     G    L  +E  +LE+ + ++G+ + ++ I + ++
Sbjct: 121 TVIAESQFTVADLSIDLVSRKVNRAGNRILLTSKEFSLLEFFVRHQGEVLPRSLIAAQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     + N ++  + +LR K+ N      + + R +GY ++ 
Sbjct: 181 DMS-FDSDTNAIDVAVKRLRAKIDNDYEPKLIQTVRGVGYMLEV 223


>gi|188579406|ref|YP_001922851.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179342904|gb|ACB78316.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 220

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ DG  A  G  G ++E   +    +   +++      ++  L       L
Sbjct: 3   ILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALAASGFGAVVLDLMLPD--GSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +R      P++ ++   ++   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRGLRERGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELAARIRAVVRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   IR+        + GE  P+ RRE  +L  LM       +K ++   +YG
Sbjct: 121 GRAAACLEHAGIRLDPAELAVTLHGEPVPVSRREFMVLTALMERPNVLRSKAELEERLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E VE N VE H+  LR K+    G   +++ R LGY +
Sbjct: 181 -WQEEVESNTVEVHVHNLRAKI----GKHAIETVRGLGYRM 216


>gi|77918267|ref|YP_356082.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM
           2380]
 gi|77544350|gb|ABA87912.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM
           2380]
          Length = 230

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 94/228 (41%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +    +   EE L++ A +    +   L+  G   L
Sbjct: 6   ILVVEDEEDILALLHYNLVREGFRVS--LAGTGEEGLETLAEDPPDLVVLDLMLPGMDGL 63

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R ++ ++      ++ ++        +   + G DD V KP   + ++AR+ ++ RR
Sbjct: 64  QVCRALKENADTRHIAVVMVTAKGEEADVVAGLELGADDYVTKPFSPKILIARIRSVLRR 123

Query: 119 LKVSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            + ++             + +        V+G    L   E R+L +L +  G    + Q
Sbjct: 124 RESADETGADQVVVHIDDLVIHPGRNQVTVKGVPVDLTFTEFRVLHFLASRPGWVFTRYQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I +A+ G  D +V +  V+  I  LRKKL        +++ R +GY  
Sbjct: 184 IVNAVRG-DDYSVTDRAVDVQIVGLRKKLGAYG--KYIETVRGVGYRF 228


>gi|295697225|ref|YP_003590463.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412827|gb|ADG07319.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 231

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +     + ++ +     +  + +      D+  I+  L G      
Sbjct: 3   ILLVEDDPRIAGLVVKGLEREHMATDHAPDAQTAQLMVEMNPYDLFIIDVGLPGS-TDGF 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L  I+R      P++ ++   SL   L  FD G DD + KP    E++AR+ A+ +R  
Sbjct: 62  ALCDILRRRGYDAPVLFLTARDSLADKLTGFDRGGDDYLVKPFAFAELVARIRALLKRAN 121

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R   G   +        + G+   L  +E ++LE LM      ++K QI   ++
Sbjct: 122 RPLQPERLTVGEWELDPKTHTFSIAGQEVELTSKEFQLLELLMQYPRYTLSKIQILEQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR---NKLGFDP---VDSKRFLGYSI 220
           G   +AV  NVVE  I +LR+K+       G  P   + + R +GY +
Sbjct: 182 GFAPDAV-TNVVEVTIGRLRQKIEGFYRDRGMHPGVVIQTVRGVGYRL 228


>gi|30020111|ref|NP_831742.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus ATCC 14579]
 gi|296502594|ref|YP_003664294.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|29895661|gb|AAP08943.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus ATCC 14579]
 gi|296323646|gb|ADH06574.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 4   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLP--GIDGL 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  + ++ +I ++     +  +     G DD + KP     + AR+ ++ RR++
Sbjct: 62  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRRIE 121

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|330810822|ref|YP_004355284.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378930|gb|AEA70280.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 222

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 98/220 (44%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  +A     G +++         +  SS   D+  ++  L   G   L
Sbjct: 3   LLLVEDHVPLADELMAGLARQGYAVDWLADGRDAVYQGSSEPYDLIILDLGLP--GVPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++    RA     P++ ++   S    ++   +G DD + KP H  E+  R+ A+ RR  
Sbjct: 61  DVLAQWRAGGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+    ++  + +    +     G    L   E R+L Y M +  + ++K+ +   +Y
Sbjct: 121 GQVNQPTLKSAGLHLDESRQCVVRDGTDIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +   + NV+E H++ LR+KL    G   ++++R  GY
Sbjct: 181 DG-ETERDSNVLEVHVNHLRRKL----GRSVIETRRGQGY 215


>gi|325263093|ref|ZP_08129828.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324031486|gb|EGB92766.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 226

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 89/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G  +   ++      +    + D++ ++  L        
Sbjct: 4   IFLVEDDKAIAKNLILLLRSEGFEVTHASTRAEAFNVLEGNKFDLALVDISLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEIKDTQDIPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIGTALRKSVR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    E   ++V +     +  G    L   E R+L   + N    + + ++   ++   
Sbjct: 122 SGAAIEICGLQVDTASGVVKKDGREVFLSALEYRLLLVFVNNPKSIITRGRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ R+      + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIERDPANPQIILTVRGTGYRL 221


>gi|262370731|ref|ZP_06064056.1| transcriptional activator protein CusR [Acinetobacter johnsonii
           SH046]
 gi|262314531|gb|EEY95573.1| transcriptional activator protein CusR [Acinetobacter johnsonii
           SH046]
          Length = 226

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D       + G   +        +    S   D+  ++  L   G    
Sbjct: 3   ILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLTGKHQALSEEYDLIILDVMLP--GLSGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   IR+    +P++ ++    ++  +   + G DD + KP    E+LAR+  + RR +
Sbjct: 61  NIINDIRSSGKSMPILFLTARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLRRGQ 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               NN  +   + +    R     G+   L  +E  ++E  M  RG+ + +  I S I+
Sbjct: 121 QREDNNIIKIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVVEVAIKRLRNKVDSNFTPKLIQNIRGMGYVLEV 223


>gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281437|gb|ABR89847.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D             + G  ++  N+    + L  +   D   ++  L   G   +
Sbjct: 3   ILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGDYDAIVLDIMLP--GRDGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R     P+I ++    +   +    +G DD + KP    E+LAR+ A+ RR + 
Sbjct: 61  EVLQALRRQKSTPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRRGRP 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       + +    R          L  +E  +L  L  +RG+ ++KT I   ++ +
Sbjct: 121 QESTHIRIADLHIDLIARRAMRGVRRLDLTAKEFALLAALARHRGQVLSKTVIVEMVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +     NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 -NFESNTNVVEVAIKRLRAKLDEPSEVKLLHTIRGMGYLLE 220


>gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 231

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      +   +G  +      + EE LQ  A +  + +   ++       
Sbjct: 4   ILLVDDDLELTQLLTEILTLEGFQVTVAE--DGEEGLQLLAEQHFNLVLLDVMMPKLNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R     P++ ++     Q  ++  ++G DD + KP   RE+LARV AI RR + 
Sbjct: 62  AMLARLRKTHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQS 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S+       + +    +     GE+  L   E  +LE L+ N G+ V+K+Q+ 
Sbjct: 122 TQPQRGGSSEEVRFMDLVLQPGLQQASCHGELLELTATEFGLLECLLRNPGQIVSKSQLS 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
             + G   E  +   ++ H+S LRKKL     G     + R  GY
Sbjct: 182 ELVLGKKLEPFD-RAIDMHLSNLRKKLPERTDGQPRFKTVRGRGY 225


>gi|315283525|ref|ZP_07871693.1| regulatory protein VanR [Listeria marthii FSL S4-120]
 gi|313612832|gb|EFR86806.1| regulatory protein VanR [Listeria marthii FSL S4-120]
          Length = 233

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            ++ DD     D       ++G ++  + + +  E   L    +  +  ++  +      
Sbjct: 7   ILIADDDXXXXDLVKLYLQNEGYTI--YQAYDGAEVWRLVQEKQPTLVILDIMMPE--MN 62

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R++R +    P++ +S        +    +G DD + KP +  E+  RV AI RR
Sbjct: 63  GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 122

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++       VS ++   GPI V        V G+   L   E  IL  L +  G+  +  
Sbjct: 123 MQQMSQVEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTXEFDILFLLASEPGRVFSSE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            IF  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 183 YIFEKIWQEK-ALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 232


>gi|304407940|ref|ZP_07389590.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342959|gb|EFM08803.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 234

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 91/229 (39%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +   +    + +  + L    +  V  I   ++  G+   
Sbjct: 7   ILVVDDDPSIVELLRDFLEYESFQV--LTACDAAQALALFQQHPVHGIVLDVMMPGQNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR+ S VP++ +S        +     G DD + K     EI+ARV A+ RR   
Sbjct: 65  ELCRTIRSSSSVPILFLSARGEDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSSA 124

Query: 122 SNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +  +        G +++    R+  V G    L  RE  +L+  +    +  +   +
Sbjct: 125 QQEQERSLAVLDYDEGRLQINLSTREVFVDGTSISLTPREFELLQLFVERPRQVFSYDHL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++   +   +++ V  H+S+LR K+  +      + +   +GY  +
Sbjct: 185 IDKLW---EGVGDKHTVRVHLSRLRDKIESDPAQPRYLINVWGVGYRFE 230


>gi|217962746|ref|YP_002341322.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141995|ref|ZP_04270520.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|217065523|gb|ACJ79773.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228641284|gb|EEK97590.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 223

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 94/228 (41%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 KVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G I +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 NKKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL +    + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGSSG--EYIKTIYGVGYKLDC 223


>gi|54112871|gb|AAV29069.1| NT02FT1860 [synthetic construct]
          Length = 228

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 12/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +G +     +G+ +   +  E  +    S   D+  ++  +  K    L
Sbjct: 3   ILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIK--TGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R IR    +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+ 
Sbjct: 61  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K  N     G              G + P+ ++E  +L  L+ N G+ V KTQ+  
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   D+ ++ N +E H+  LRKK+      + + + R +GY
Sbjct: 181 EVYST-DKEMDTNTLEVHMHNLRKKI---NIPNFIQTIRGVGY 219


>gi|153954968|ref|YP_001395733.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855413|ref|YP_002472535.1| hypothetical protein CKR_2070 [Clostridium kluyveri NBRC 12016]
 gi|146347826|gb|EDK34362.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569137|dbj|BAH07121.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 227

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++    A    +G+ +    +   EE L+      V  +   ++        
Sbjct: 6   LMVDDEERMRLLIEAYLKREGLKV--LLAENGEEALRKFKENHVDLVVLDIMMPLMDGWT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++     +  L  F  G D  V KP+  + ++A++ A+ RR    
Sbjct: 64  VCRELRKISNVPIIMLTARGEDEDQLLGFQLGTDSYVTKPVSPKILVAKIKALLRRTYYD 123

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                       + +  +G + ++ GE   L  +E   L YL+ N+   +++ +I  AI+
Sbjct: 124 EINQVKDNTYDGLFINEEGHEVKIDGENIYLSPKEFEFLCYLIKNKDIVLSREKILDAIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D   +   V++H+ +LR+KL  K     + + R +GY  + 
Sbjct: 184 GI-DYYGDLRTVDTHVKRLREKLGVKSY--LITTVRGVGYKFEV 224


>gi|194365942|ref|YP_002028552.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas maltophilia
           R551-3]
 gi|194348746|gb|ACF51869.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas maltophilia
           R551-3]
          Length = 232

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  S    +  ++  L   G    
Sbjct: 3   LLIVEDEPKTGNYLRQGLIEAGYVVDLASNGIDGLHLAESGEYQLVILDVMLP--GLDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R A   +P++ ++   S+   +   + G DD + KP    E+LARV  + RR +
Sbjct: 61  TVLSRLRGAGWPLPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R     + V +  R  E  G+   L ++E  +LE L   RG+ + ++ I S ++
Sbjct: 121 AVPQVERIVIADLVVDTQRRRVERGGQRIALSQKEYTLLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFADKLIITVRGMGYVLE 222


>gi|27375415|ref|NP_766944.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27348552|dbj|BAC45569.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 324

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A   +  +A   D G  ++             ++  D   ++  L   G   L
Sbjct: 102 ILLIEDDAETAEAIVAELADRGFEVQWAGDGVDGLDRARTSSPDAMIVDRMLP--GMDGL 159

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R    + P++ +S   ++   +     G DD + KP    E++AR+ A+ RR  
Sbjct: 160 AVIEALRKDQVRTPVLVLSALGAVDDRVRGLRMGGDDYLTKPFAIIELVARIEALLRRPT 219

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S       GP+ +    R          L  RE R+LEY+M    + + +  +   ++ 
Sbjct: 220 DSRETILHVGPLEIDLIERTARRGERELELLPREFRLLEYMMRRNDQLLTRAMLLEEVWN 279

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+++ H+ +LR K+        + + R  G+ +
Sbjct: 280 YKFVPATTNLIDVHMGRLRHKVDGPGEVQLIHNVRGSGFVL 320


>gi|89096819|ref|ZP_01169710.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088199|gb|EAR67309.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 236

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      +   +G S     +   EE L+  +R  +  +   ++  G+   
Sbjct: 6   ILLVDDEKSIVKLMETVLRKEGFSSIH-TAYTAEEALECVSRHPIDIVVLDVMLPGQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   IR  S   ++ ++   S    L  F  G DD + KP +  EI AR+ A  RR + 
Sbjct: 65  DICPKIREISDAYILFLTARVSDLDVLTGFAIGGDDYITKPFNPLEIAARIKARLRRNQA 124

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +          + G   +  +  D  V+G+    P +   +L+YL  +    ++KTQ+ 
Sbjct: 125 PSPALKEAGRKHDFGRFILDEEAGDLIVEGKAVQTPAQVFLLLQYLCQHPNTVISKTQML 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            A++G FD  V++N V  HI ++R+++  +    + + + R LGY +
Sbjct: 185 EAVWG-FDSFVDDNTVTVHIRRIRERIEKDPSHPELLVTVRGLGYKL 230


>gi|313807086|gb|EFS45581.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
          Length = 236

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S  G         +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLMLP--GRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
            + + IR  S VP+I ++        +    +G DD V KP    E++AR+ A  R    
Sbjct: 68  RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G +    +  +V  H+ +LR K+ RN      + +   +GY I+
Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVCGIGYRIN 230


>gi|229127407|ref|ZP_04256401.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|229144616|ref|ZP_04273018.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228638856|gb|EEK95284.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228656026|gb|EEL11870.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
          Length = 232

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 7   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLP--GIDGL 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  + ++ +I ++     +  +     G DD + KP     + AR+ ++ RR++
Sbjct: 65  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRRIE 124

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|254477299|ref|ZP_05090685.1| two-component response regulator [Ruegeria sp. R11]
 gi|214031542|gb|EEB72377.1| two-component response regulator [Ruegeria sp. R11]
          Length = 225

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +        G  G  ++   +        S+   DV   +  +       L
Sbjct: 3   ILLLEDDADIGAWTSKGLGAAGHVVDWIENGREALIAASTRDYDVLVFDRMVPD--LDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R A    P+I ++   +++  ++  ++G DD ++KP    E+LAR+ A+ RR +
Sbjct: 61  SALRTLRGARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGR 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +    +     + +    +     G   PL  +E R+LE LM ++G+   +  +   
Sbjct: 121 GEGDAPATKLSHRGLELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLER 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ + +     +VVE+H+S+LR K+      + + + R  GY  
Sbjct: 181 VWDI-NFEPSTSVVETHMSRLRNKIEKPFDAEYIRTIRGSGYMF 223


>gi|62261777|gb|AAX78015.1| unknown protein [synthetic construct]
          Length = 263

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 12/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +G +     +G+ +   +  E  +    S   D+  ++  +  K    L
Sbjct: 29  ILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIK--TGL 86

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R IR    +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+ 
Sbjct: 87  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 146

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K  N     G              G + P+ ++E  +L  L+ N G+ V KTQ+  
Sbjct: 147 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 206

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   D+ ++ N +E H+  LRKK+      + + + R +GY
Sbjct: 207 EVYST-DKEMDTNTLEVHMHNLRKKI---NIPNFIQTIRGVGY 245


>gi|268319896|ref|YP_003293552.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|262398271|emb|CAX67285.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 242

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   +          +     +EG       + L  +  ED  AI   L+     
Sbjct: 4   ILIIEDEKNLARFVELELRHEKYETQVEG----NGRKGLDLALNEDFDAILLDLMLPDLN 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+
Sbjct: 60  GLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRV 119

Query: 120 KVS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++                   + + +  R          L +RE  +L  L+ N+   V 
Sbjct: 120 QIEKRAMGDTMGVQKVIHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVT 179

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 180 REQLLNKIWGP-ESKIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYMV 229


>gi|229164200|ref|ZP_04292135.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619317|gb|EEK76208.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 224

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E ++      DV  ++  L       
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREAVEKWNEGPDVLILDVMLPDT--DG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 60  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRV 119

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     VS+     G + +    R   V GE   L  RE  + +  ++N  +   + ++ 
Sbjct: 120 KKEEVTVSHEVIRAGELIICPKERKVHVGGEEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 180 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 224


>gi|225571197|ref|ZP_03780195.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
           15053]
 gi|225160028|gb|EEG72647.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
           15053]
          Length = 233

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + + EE L+    E V  +   ++      +
Sbjct: 6   ILVCDDDREIVEAIDIYLTQEGYEV--LKAYDGEEALKVLQSEKVDLLIIDVMMPRLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 64  RATLKIREQNNMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQ 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   S    E G + +  D ++  V GE+  L   E  IL  L+ N+GK  +  QI
Sbjct: 124 LGSTVSGDSQAVYEVGGLSINDDLKEVTVDGELVKLTPIEYNILLLLVKNQGKVFSIDQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+   D    +N V  HI  +R+K+  N      +     +GY ++
Sbjct: 184 YENIWNE-DAIGVDNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKVE 231


>gi|329922845|ref|ZP_08278361.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941618|gb|EGG37903.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 239

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +  + ++  +S +           D+  ++  L       
Sbjct: 6   ILVVDDEIGILKLLEITLRKENFTHIDTVSSGKGALQRVKEKSYDMILLDIMLPD--LSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR H+  P+I IS   +    L     G DD + KP +  E++AR+ AI RR +
Sbjct: 64  FELCTEIRKHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQR 123

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  N  +       G +    +     V+G+      +E  +L +   +        Q++
Sbjct: 124 IMENALQQNTAYDYGHLSYHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTVQLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G  D   EE  V  HISKLRKK+ +       + + R +GY  
Sbjct: 184 ELVWGN-DVFGEEKTVTIHISKLRKKIGDDTRKPAIIVNLRGIGYKF 229


>gi|317500934|ref|ZP_07959144.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089166|ref|ZP_08338069.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897637|gb|EFV19698.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405943|gb|EGG85469.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 226

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G S+  + +    E L   +   D+  ++  +   G   
Sbjct: 7   ILIVDDEQSILDMLKLQLEFEGYSV--YTAGNAAEALDKLSYSPDIVLLDINM--DGMNG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L   IR     P+I ++   S Q  ++   +G DD + KP    E+LAR++A  RR +
Sbjct: 63  LDLCVSIRDFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHLRREQ 122

Query: 121 VSNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S+N+ ++     + +    R   ++G    L  +E  I++ L +N G+   + +I+  I
Sbjct: 123 RSHNKTKSKFSEDLIIDYSDRSLYIKGHKIELSNKEFEIIQLLSSNAGQVFDREKIYENI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+ D   +  V++ HI K+R K         + +   +GY  +
Sbjct: 183 WGI-DGNGDSVVIKEHIRKIRLKFNEFTDKGYITTVWGVGYKWE 225


>gi|313677457|ref|YP_004055453.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
 gi|312944155|gb|ADR23345.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
          Length = 229

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 97/228 (42%), Gaps = 19/228 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + +        +G  +E     +         +  +  ++  +  +    +E
Sbjct: 10  LVVDDESDILELLEYNLTKEGYEVETAQDGKTAVEKAQKFQPQLILLDIMMPNQ--DGVE 67

Query: 63  LPRIIRAHSQVP------LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
             R +R     P      +I ++      + +  F++G DD + KPI  R +++R+ A +
Sbjct: 68  TCRQLRE---TPESANSFIIFLTARSEEYSEVAAFENGADDYITKPIKPRALMSRINAYF 124

Query: 117 RR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           RR    +  NN+   G + +        V G+   LP++E  +L +L  N  K   +  +
Sbjct: 125 RRDVKKQKDNNKITIGGLTIDRTSYTVSVDGKQVSLPKKEFELLYFLAQNPNKVFNRDDL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              I+G  D  V    V+ H+    +K+R K+G   + + + +GY  D
Sbjct: 185 LQNIWG-SDVYVLARTVDVHV----RKVREKVGDGYISTVKGVGYKFD 227


>gi|307946640|ref|ZP_07661975.1| transcriptional activator protein Irlr [Roseibium sp. TrichSKD4]
 gi|307770304|gb|EFO29530.1| transcriptional activator protein Irlr [Roseibium sp. TrichSKD4]
          Length = 226

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++            S    DV  ++      G   L
Sbjct: 3   LMVLEDDPEIGQWVYDGLTREGHVVDWLKDGREALAAGSINSYDVLILDRMTP--GLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA     P++ ++    +   ++  ++G DD + KP    E+ ARV A+ RR  
Sbjct: 61  SVLKALRAAKVATPVLFLTAMGDVDDRVEGLEAGGDDYLAKPFAFSELKARVGALGRRSS 120

Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++ + ET       I +    R     G+   L  +E  +LE L+ + G+   +  +  
Sbjct: 121 FASEQTETTKLNVKDIELDLLRRKCTRAGQDVDLNGKEFALLEALIRSNGRIQTRNMLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + +     +VVE+HIS+LR K+    G   + + R  GY I+
Sbjct: 181 KVWNM-NFDPTTSVVETHISRLRGKIEKPFGDTVIRTVRGAGYVIE 225


>gi|296131358|ref|YP_003638608.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296023173|gb|ADG76409.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 237

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V++DD   +          DG      +       +      DV  ++  L   G   +E
Sbjct: 10  VVVDDEQALARLVAGYLERDGFETHVCHDGVGALQVLREVDPDVVVLDLGLP--GLDGVE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   +I ++       TL     G DD V KP   RE++ARV  + RR + +
Sbjct: 68  VCRQLRTFSDCYVIMLTARAEEVDTLIGLSVGADDYVTKPFSPRELMARVGVLMRRPRRT 127

Query: 123 --------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + V +D R+  V GE   L R E  +L  L A  G  +++  + 
Sbjct: 128 PGPAAPAPSAAVTIGSLTVDTDAREVHVDGEPVALTRTEFDVLAALAARPGVVLSRRALI 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            A++G      +E++V+ H+  +R+KL +       V + R +GY +
Sbjct: 188 EAVWGAG-WVGDEHLVDVHVLHVRQKLGDSAEQQRFVRTVRGVGYRM 233


>gi|158337175|ref|YP_001518350.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158307416|gb|ABW29033.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 253

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L      D+  ++  L        
Sbjct: 5   ILVIDDDPAIAELVAINLEMAGYDVAQATDGIKGQALAVQLLPDLIILDLMLPKV--DGF 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     + +P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 63  TICQRLRRDQRTADIPILMLTALSQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRR 122

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +     +V  L R E  +L  L+   G+ V+ ++
Sbjct: 123 TDRIPQAARHSEILSYGPLTLVPERFEVLWVDKVIKLTRLEFELLHCLLQRHGQTVSPSE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 183 ILQEVWG-YDPNDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLE 231


>gi|284051845|ref|ZP_06382055.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291567764|dbj|BAI90036.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 253

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + ++          G S+           +      D+  ++  +        
Sbjct: 16  ILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPR--LNGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + IR  S +P+I ++    +   +   + G DD + KP   +E+ AR+ AI RR K 
Sbjct: 74  GVCQKIREISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRRFKD 133

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +S    +   +R+ +  R      ++ PL   E  +LE L    G+ V++++I 
Sbjct: 134 NASSHDLSPEVIQVDTLRIDTIKRRVYKGDKLLPLTYIEFNLLELLFKRSGEAVSRSEIL 193

Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
             ++G     + +  VV+ H+++LR K+  ++   + + + R +GYS
Sbjct: 194 QQLWGYTPRRIADMRVVDVHVARLRAKIETDQRNPEYILTVRGIGYS 240


>gi|229010082|ref|ZP_04167296.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229056424|ref|ZP_04195837.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229131595|ref|ZP_04260477.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228651821|gb|EEL07776.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228720898|gb|EEL72447.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228751215|gb|EEM01027.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|225567971|ref|ZP_03776996.1| hypothetical protein CLOHYLEM_04044 [Clostridium hylemonae DSM
           15053]
 gi|225163259|gb|EEG75878.1| hypothetical protein CLOHYLEM_04044 [Clostridium hylemonae DSM
           15053]
          Length = 240

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +        +    E L    R+D+      ++       
Sbjct: 13  ILIVEDDKAIADAVAYTLEKEEFKF--IIAGSAAEALPYIGRKDIGLYLLDVMLPDGTGY 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R I+ +  VP+I ++        +   D G DD + KP   RE+++R+ ++ RR   
Sbjct: 71  DICRKIKRYHNVPVIFLTACDEEANVVMGLDIGADDYIVKPFRIRELISRIRSVLRRYDS 130

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +         G IRV +       + E   L   E ++L +L+ + G+ V + Q+ S 
Sbjct: 131 RQDIRPASVYCAGDIRVLTAEGKVYCKEEEICLSALEYKLLLFLIRHEGQIVTREQLLSH 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           IY +  E V +N +  +I +LR KL  +  G + + + R LGY+I
Sbjct: 191 IYDIAGEYVNDNTLTVYIKRLRDKLETDTEGPEIIRTVRGLGYTI 235


>gi|297197902|ref|ZP_06915299.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197717155|gb|EDY61189.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 231

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V++G           ++   + E       + R D+  ++  L   G   LE
Sbjct: 5   LLIEDDPAVREGVALALRRQNHDVDATATGEEGMDRLRAFRPDIVVLDLMLP--GMTGLE 62

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA  Q  P+I  +        +   ++G DD V KP+  R + AR+ A+ RR   
Sbjct: 63  VCRGIRAVDQTLPIIMATARGEEVDIVVGLEAGADDYVVKPVLARVLDARIRAVLRRAAG 122

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               AE        G + V   G    + GE   L   E R+L  L A+ G+  ++ Q+ 
Sbjct: 123 GTPGAEGLPKIDTYGDLAVDRAGLTVALNGEPIALAPSELRLLLTLSASPGQVFSRQQLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            A++   D   +  +V++ + +LR K+         + + R  GY  
Sbjct: 183 EAVW-EHDYHGDARLVDACVKRLRTKMSEPPRAPRYIHTVRGFGYRF 228


>gi|153816362|ref|ZP_01969030.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756]
 gi|317501003|ref|ZP_07959211.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089043|ref|ZP_08337949.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846323|gb|EDK23241.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756]
 gi|316897581|gb|EFV19644.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406243|gb|EGG85762.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 232

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + +  E L+   RE+V  +   ++      +
Sbjct: 4   ILVCDDDKEIVEAIEIYLTQEGYRI--LKAYDGTEALEMLEREEVHLLLLDVMMPKLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  + +P+I +S        +   + G DD V KP    E++ARV +  RR   
Sbjct: 62  RATLKIREKNSIPIIILSAKSEDADKILGLNVGADDYVTKPFSPLELVARVKSQLRRYTQ 121

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               A+         G +R+  D ++  V GE+  L   E  IL  LM N+G+  +  QI
Sbjct: 122 LGGTAQNENDKIYSVGGLRINDDLKEVTVDGELVRLTPIEYNILLLLMKNQGRVFSINQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 182 YEMIWNE-EAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIE 229


>gi|71906343|ref|YP_283930.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71845964|gb|AAZ45460.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 226

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          DG      +  E       S    + A++  +   G   +
Sbjct: 4   ILLVDDDVELSGMLRDYLNQDGFEATAVHDGESGVVEALSGHYAIVALDVMMP--GISGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IRA S VP++ ++        +   + G DD V KP   RE+ AR+ AI RR   
Sbjct: 62  EVLRRIRAVSNVPVLMLTAKGDDMDRIVGLELGADDYVPKPCQPRELAARLRAILRRTTL 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + ++     GP+ V+ + R  E  G    +   E  ++E L  N G+ V+K  +     
Sbjct: 122 VEAASGPIVAGPLTVYPEQRRVEWGGAPVDMTSTEFNLVEVLARNAGRPVSKGLLCEQAL 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G    A  +  ++ H+S +R KL N   G   + +    GY +
Sbjct: 182 GRP-LARFDRSIDVHLSSIRHKLGNLPDGRSCIQTVYRQGYQL 223


>gi|297579645|ref|ZP_06941572.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535291|gb|EFH74125.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 224

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHV--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + IRA    V ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIGLTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|300723604|ref|YP_003712909.1| response regulator in two-component regulatory system with PhoQ
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630126|emb|CBJ90763.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Mg+] (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 227

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL++          G  ++   + +  ++       D++ I+  L   GE  L
Sbjct: 3   ILIVEDNALLRHHLTVQLRGIGHQVDAAENAKEADYYLKENHPDIAIIDLGLP--GEDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R  R     +P++ ++   S Q  +   ++G DD V KP H  EI AR+ A+ RR  
Sbjct: 61  SMLRRWRNEQINLPILVLTARESWQEKVAVLNAGADDYVTKPFHLEEINARIQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  +    ++  V      L   E  I+E LM N GK V+K  +   +Y 
Sbjct: 121 GLASQIVALSPFLIDLSRKEFSVNETNIRLTAFEYTIIETLMRNNGKVVSKESLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKK+ N+   + + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKILNQWPEEVIVTVRGQGYRFDV 222


>gi|294012529|ref|YP_003545989.1| two-component system phosphate regulon response regulator OmpR
           [Sphingobium japonicum UT26S]
 gi|292675859|dbj|BAI97377.1| two-component system phosphate regulon response regulator OmpR
           [Sphingobium japonicum UT26S]
          Length = 238

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   ++   + L   +G    G  +    + L    R D++ ++  L   GE   
Sbjct: 6   IAVVEDDREIRALVVDLLNREGFEAVGCRTTLEFDQLNQRRRIDLAVLDVMLP--GEDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA   +P++ ++        +   + G DD + KP + RE++ARV AI RR + 
Sbjct: 64  SLCRRLRAAGDIPVLMVTAKADDVDRIVGLEIGADDYLPKPFNPRELVARVRAILRRTRG 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   +N R   G   +    R     +GE   L   E  +L   + +  + + + Q
Sbjct: 124 QHRISPALANERYGFGGWTLDLGARSVVGPEGEEVELTAGEFDLLHCFVTHPQRVLNRDQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +     G      +   ++  +S+LR+KL    G D  + + R  GY  
Sbjct: 184 LLDWTRGRSAGPFD-RAIDVQLSRLRRKLAQAPGGDTVIKTVRGGGYQF 231


>gi|255320575|ref|ZP_05361754.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262374353|ref|ZP_06067628.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262380816|ref|ZP_06073968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255302376|gb|EET81614.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262297558|gb|EEY85475.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|262310610|gb|EEY91699.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 226

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D       + G   +        +    S   D+  ++  L   G    
Sbjct: 3   ILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLTGKHQALSEEYDLIILDVMLP--GLNGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   IR+    +P++ ++    ++  +   + G DD + KP    E+LAR+  + RR +
Sbjct: 61  NIINDIRSSGKTMPILFLTARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLRRGQ 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               NN  +   + +    R     G+   L  +E  ++E  M  RG+ + +  I S I+
Sbjct: 121 QREDNNIIKIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVVEVAIKRLRNKVDSNFTPKLIQNIRGMGYVLEV 223


>gi|206562188|ref|YP_002232951.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038228|emb|CAR54181.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 106/221 (47%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           +L++D  LV  G      + G++++  +     +    +   D+  ++  L    G  +L
Sbjct: 4   LLVEDDKLVGSGVEDGLIEAGMTVDWAHDGRHAQLALETTPYDLVVLDLGLPRMSGTDLL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
              R  R H   P++ ++   ++   +    +G DD + KP    E++AR  A+ RR + 
Sbjct: 64  GWIRKRRDH--TPVLVMTARDTVADRVSGLSAGADDYLGKPFDLAELIARCRALVRRSQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  E G + V           E   L  RE  +L  L+AN+G+ +++ Q+  ++YG 
Sbjct: 122 RGTDTIEYGELTVDPALMTVVRGAERIALTSRECALLVELLANQGRPLSRAQLQDSLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++E +E N +E H+S LRKKL    G + + + R +GY ++
Sbjct: 181 WNEEIESNAIEVHVSNLRKKL----GAELIRTIRGVGYVVE 217


>gi|167756093|ref|ZP_02428220.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402]
 gi|167704085|gb|EDS18664.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402]
          Length = 227

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   +++        +G  +  F++              ++  +  L       +
Sbjct: 5   IFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLMLP--KMSGI 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  + IR   S++P++ +S        ++  DSG DD + KP    E+ ARV ++ RR  
Sbjct: 63  DAIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRR-H 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+++   T  + V    R  ++  +   L  +E ++L YLM N+ + V + ++ + I+G 
Sbjct: 122 VTSDIIRTKHLTVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E   ++ HI  LR KL +  G   + + R +GY  
Sbjct: 181 YDFIGESRALDVHIRALRSKLNDD-GHKYIKTIRSVGYRF 219


>gi|115377125|ref|ZP_01464339.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1]
 gi|310822859|ref|YP_003955217.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365834|gb|EAU64855.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1]
 gi|309395931|gb|ADO73390.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 226

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G   E  NS         +   D+  ++  L        
Sbjct: 4   ILIIEDEQDLAGLIEYNLRAAGFDPEVANSGAGGLAKARTRLPDLVLLDLMLPD--ISGH 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R+++    +   P++ +S        +   + G DD V KP   RE++ RV A+ RR
Sbjct: 62  EVLRMLKNDPGLRAAPVVIVSAKGQEADRIQGLEMGADDYVVKPFSVRELMLRVKAVLRR 121

Query: 119 L---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  + +   G I++ +      V+GE   L   E R+L  L+   G+   +  + S
Sbjct: 122 ADADEGPSTQLTAGEIQLDTSRHQVRVKGEEVVLTALEFRLLHTLLERGGRVQTREVLLS 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G+  E +    V++HI +LR+KL      D +++ R +GY ++
Sbjct: 182 DVWGIQAE-IHTRTVDTHIKRLREKLGPAG--DIIETVRGVGYKLN 224


>gi|125975295|ref|YP_001039205.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256003046|ref|ZP_05428038.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|125715520|gb|ABN54012.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255992737|gb|EEU02827.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|316939457|gb|ADU73491.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 231

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G ++    +   ++ L++   E +  +   ++      L
Sbjct: 6   ILVCDDDKAIVDALEIYLKQEGYNV--VKAHTGKQALKALEEEKIHLVLMDVMMPELDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR    +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 64  SATVKIREELNIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQLRRYTQ 123

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  +   + G + + ++ ++  V GE+  L   E  I+ +LM N GK  +  QI+ 
Sbjct: 124 LGGAERKSGVLKNGGLELDTEAKELRVDGELVKLTATEYGIVLFLMKNAGKVFSIDQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++     +  EN V  HI ++R+K+  N      +     +GY ++
Sbjct: 184 NVWKEPAYS-SENTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKME 229


>gi|329768935|ref|ZP_08260362.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
 gi|328836652|gb|EGF86310.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
          Length = 221

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 99/219 (45%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  S++  +  + +E L   +  +   I   ++       
Sbjct: 3   ILVVEDERDLNRIITKHLKKNNYSVD--SCFDGQEALDFISYSEYDLIITDIMMPNVNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E    +R +    P+I ++   +L+  +   DSG DD + KP    E+LAR+  + RR  
Sbjct: 61  EFIEKLRNNKNNTPVILLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            ++ N  +   + +    +      E+  L  +E  +LEYLM N+G  +++ QI + ++ 
Sbjct: 121 GLATNIIQIEDVVLDISKKQVTKSKELIDLTGKEYEVLEYLMKNKGSILSRDQILNHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++     N+V+  I  +RKKL N      + +KR LGY
Sbjct: 181 -YNYEGASNIVDVIIKNIRKKLSNGEDSTIIYTKRGLGY 218


>gi|307564544|ref|ZP_07627085.1| response regulator receiver domain protein [Prevotella amnii CRIS
           21A-A]
 gi|307346904|gb|EFN92200.1| response regulator receiver domain protein [Prevotella amnii CRIS
           21A-A]
          Length = 234

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D       + G  +    + +    LQ   + D   I + +I       
Sbjct: 5   ILIVEDEQRVADLLKVGIEEHGYEVMV--AYDGMMGLQLFNKYDFKLIISDIILPKLDGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +L + IR  +  VP++ ++   +    L+ FD G DD + KP   RE++AR+  + +R  
Sbjct: 63  DLCKEIRTKNKHVPILMLTALGTTDDKLEGFDVGADDYMVKPFDLRELVARMKVLLKRNS 122

Query: 119 ---LKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               +   N  +     +++  +  + +  G    L  +E  +L+Y+M +  + + +T+I
Sbjct: 123 SQIYESEGNAVDIVYADLQINPNLHECKRGGVAIKLTPKEYNLLKYMMLHADRIIPRTEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G        N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 183 AEKVWGTH-FDTGTNFIDVYINYLRKKIDRSFPVKLIHTKPGIGFVL 228


>gi|206896488|ref|YP_002246916.1| DNA-binding response regulator YycF [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206739105|gb|ACI18183.1| DNA-binding response regulator YycF [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 236

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G  +    ++  +E L+       + +   L+       
Sbjct: 8   ILVVEDDRNILDAIERKLTKEGFKV--IKAMNGKEALEKFYAHQPNLVLLDLMLPLVDGK 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ + IR+    P+I ++        +   + G DD + KP    E++ARV A+ RR   
Sbjct: 66  EILKEIRSQYDTPIIVVTAREEEVDRILGLELGADDYITKPFSLPELVARVRAVLRRTYG 125

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V   R     I +   G +  V    + LP+++  +L  LM+  G+ + +  + + 
Sbjct: 126 MKKTVGERRLVCDDIALDLRGHELRVNNRSYLLPKKQFELLRILMSRAGEVLTREYLLNE 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+G  D   ++  ++ HI  LR K+  N      + + R +GY  +
Sbjct: 186 IWGA-DYYGDKRTLDVHIKWLRDKIEPNPNEPKYILTVRGVGYKFN 230


>gi|254501423|ref|ZP_05113574.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437494|gb|EEE44173.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 227

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 17/230 (7%)

Query: 1   MFVLIDDRAL---VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
           + +L DDR L   V  G      ++G  ++ F   + +E L ++  +D   +    +  G
Sbjct: 3   ILLLEDDRQLGPWVAGG----LREEGHVVDHFT--DGKEALIAAMGQDYDVLILDRMVSG 56

Query: 58  EKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              L + + +RA     P + ++    +   ++ FD+G DD + KP    E+ ARV A+ 
Sbjct: 57  LDGLSVLKSLRASEDPTPALFLTALGEVDARVEGFDAGGDDYLTKPFAFVELSARVNALG 116

Query: 117 RR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           RR        +       G + +    R  E QG+V  L  +E ++LEY M   G+ V +
Sbjct: 117 RRRDSNGTSTIEPTTLRYGVLSLDLLARRCERQGQVIDLMAKEFKLLEYFMRRPGRLVTR 176

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           T +   ++ +       +VVE+HIS+LR K+      + + ++R  GY  
Sbjct: 177 TMLLEQVWDMS-FDPTTSVVETHISRLRSKIDKPFDDELIRTRRGEGYVF 225


>gi|153938445|ref|YP_001391244.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168180510|ref|ZP_02615174.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|152934341|gb|ABS39839.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|182668847|gb|EDT80825.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|295319280|gb|ADF99657.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 233

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 17/231 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEK 59
           +++DD   ++D           S+E  N ++  + L +       ++  I   ++     
Sbjct: 7   LVVDDEKEIRDAIEIYLR----SIESINIIKAADGLDALDILENNEIHVIILDIMMPKLD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +     IR  + +P+I +S        +   + G DD + KP +  E++ARV +  RR 
Sbjct: 63  GIRTCMKIRERNNIPIIMLSAKNEDTDKILGLNIGADDYIAKPFNPLELVARVNSQLRRY 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      ++      + +        V G+   L   E  IL  L  N G+    +
Sbjct: 123 TNLGNFPKTADDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVFPSS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           QI+  ++        EN V  HI +LRKK+  +      +     +GY ID
Sbjct: 183 QIYEYVWNEP-SFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKID 232


>gi|146338495|ref|YP_001203543.1| OmpR family two-component response regulator [Bradyrhizobium sp.
           ORS278]
 gi|146191301|emb|CAL75306.1| two-component response transcriptional regulator (OmpR family)
           [Bradyrhizobium sp. ORS278]
          Length = 235

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   ++         +G  ++ G      + +  +    D+  ++  L   GE  
Sbjct: 7   LLIIEDDIEIRSLLRDHLAREGFRVDVGDGGAALDRFRNTFGDPDLVVLDIMLP--GEDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +RA S+VP++ ++        +   + G DD + KP   RE++AR+ AI RR +
Sbjct: 65  LSICRRLRAASRVPILMLTAKGDEIDRIVGLEMGADDYLPKPFSPRELVARIRAILRRAE 124

Query: 121 VSNNR----AETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +            + V  D R+    Q    PL   E  +L   +    + +++ Q+  
Sbjct: 125 PAPLENRRFLVNATLTVDLDKREIAHAQDGALPLTSAEFELLGCFLVRPNRVLSRDQLMD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              G   + ++   ++  +S+LRKK+      + + + R  GY  
Sbjct: 185 WTRGRQADPLD-RTIDVQVSRLRKKIERDGEEELIKTVRSAGYIF 228


>gi|117922456|ref|YP_871648.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614788|gb|ABK50242.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 227

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        D   S++  +  E   +       D + I+  L       +
Sbjct: 3   LLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLFQAIEYNYDAAIIDVGLP--KLDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L R +R   +  P++ ++   S Q  ++  D+G DD + KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     GP  + +   +     E+  L   E ++ E  M ++G+  +KT +   IY 
Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +L KKL     ++ +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLCKKLDPDNQYNLIETLRGQGYRL 220


>gi|298290157|ref|YP_003692096.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296926668|gb|ADH87477.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 239

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 12/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++   +   G +G  +E   S    +        D+  ++  L   GE  L 
Sbjct: 7   LLVEDDRDIRSLLVDFLGGEGYDVEAVGSGALMDRALMRGMPDLVILDIMLP--GEDGLS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R  S+VP++ ++        +   + G DD + KP + RE+LAR+ A+ RR    
Sbjct: 65  ICRRLRTKSRVPILMLTAKHDDIDRIVGLEIGADDYLGKPFNPRELLARIRALLRRASGP 124

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    R     +    D R      G+   L   E  +L   +   G+ +++ Q+ 
Sbjct: 125 LSAGVPERRRRRFAGLVADLDARTVVDDGGQRVNLTTAEFDLLTCFLERPGRVLSRDQLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGY 218
               G       +  ++  +S+LR KL   +G    P+ + R +GY
Sbjct: 185 DWTRGRAGGDPFDRTIDVTVSRLRGKLSRCIGEAEQPITTVRNVGY 230


>gi|325963065|ref|YP_004240971.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469152|gb|ADX72837.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 246

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G S+           L    R DV  ++  L   G   +E
Sbjct: 25  LVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKLAKDFRPDVLVLDVMLP--GFDGVE 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IRA   +VP + ++   ++Q  +    +G DD V KP    E+L R+  + +R  V
Sbjct: 83  LLGRIRAFAPEVPALFLTAKDAIQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSGV 142

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G + +  D R+    G+   L   +  +L YLM N  + ++K QI   ++
Sbjct: 143 AAMDTAELVVGDLVLNVDTREVTRAGQDVQLTATQFELLRYLMENPKRVISKAQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ + +    + + R  GY I
Sbjct: 203 N-YDFGGQANIVELYISYLRKKI-DAVHPPMIHTVRGAGYVI 242


>gi|296103743|ref|YP_003613889.1| DNA-binding transcriptional regulator BaeR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295058202|gb|ADF62940.1| DNA-binding transcriptional regulator BaeR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 240

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPSLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                      P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQVLDAESPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL         + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWEAD 235


>gi|296137847|ref|YP_003645090.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296025981|gb|ADG76751.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 235

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 18/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D            +    S   ++     +  D   ++  L   GE   
Sbjct: 4   LLLIEDDPAIVDALTLSLQRLDYQVAHLPSA-PDDLDDHVSAADAVILDVGLP--GEDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  SQVP++ ++       T+   +SG DD V KP+  R + AR+ A  RR   
Sbjct: 61  AVCRRIRRTSQVPILMLTARADDIDTVAGLESGADDYVVKPVSPRVLDARIKAALRRSAP 120

Query: 122 SNNRAET--------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           +    ET                + V     +    G   PL   E+R++     + G+ 
Sbjct: 121 AGAAPETVVAEPAVPAVAVPGTGLVVDRAAAEVLRDGAPLPLTPTEKRLMYVFADHPGQV 180

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++ Q+ + ++   D   +  +V++ I +LR K+        +++ R  GY  
Sbjct: 181 LSREQLLTLVWNQ-DFLGDSRLVDNAILRLRPKVDPPGEPSCIETVRGFGYRF 232


>gi|255036502|ref|YP_003087123.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254949258|gb|ACT93958.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 228

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +    E        + +    + D+  ++  L   G K  
Sbjct: 4   ILIVEDDRRIAQNIFRGLAAENFEAEIAYDGITGKQMALEKKFDLVLLDVNLP--GMKGY 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           ++ + +R     +P+I ++ +  ++  ++  +SG DD + KP   RE+LAR+ A  R   
Sbjct: 62  DVCQQLRVYKPSLPIIMLTAFGEIEDKVEGLNSGADDYIVKPFDFRELLARIYAALRVSD 121

Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + S+       + +    +     G+V  L  +E  +LEY + +RG+ V+K  +  
Sbjct: 122 LMHPETSDKILRIADLEMNLGTKQVRRAGQVIDLTAKEFALLEYFLLHRGRVVSKMDLAE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ L +     NVVE +I+ LRKK+        + ++  +GY +
Sbjct: 182 HVWHL-NFDPGTNVVEVYINYLRKKVDKDFPTKLIHTRPGMGYIM 225


>gi|167032955|ref|YP_001668186.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859443|gb|ABY97850.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 222

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D   A     G +++         +   S   D+  ++  L   G   L
Sbjct: 3   LLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLP--GLPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+    RA     P++ ++   S    ++   +G DD ++KP H  E+  R+ A+ RR +
Sbjct: 61  EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  + E   + +    +     G    L   E R+L Y M +  + ++K+ +   +Y
Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +   + NV+E H++ LR+KL    G   ++++R  GY
Sbjct: 181 DG-ETERDSNVLEVHVNHLRRKL----GRSVIETRRGQGY 215


>gi|317129751|ref|YP_004096033.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474699|gb|ADU31302.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 7/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D  ++ +   A     G  +E   + +           D   ++  L        E+
Sbjct: 7   IVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPD--MPGEEI 64

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            + IR  S VP++ +S   S +  +     G DD V KP   RE++ R+ AI RR +  N
Sbjct: 65  CKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTLN 124

Query: 124 N----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      I +    ++  +  E   L   E  I+  +  + G+  ++  +   I  
Sbjct: 125 KMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADLLQKIQE 184

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                  E  ++ HI  LRKKL  N      + +   +GY  
Sbjct: 185 DSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKF 226


>gi|254501155|ref|ZP_05113306.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437226|gb|EEE43905.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 228

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +       + G   +  +  E    +      D+  ++  L  +    L
Sbjct: 4   ILVIEDDHEAANYLAKGLSELGHRADKADDGETGLQMALDRDYDILIVDRMLPKR--DGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P++ +S    +   +    +G DD + KP    E+ ARV A+ RR K
Sbjct: 62  AVIEELRKSGNHTPVLILSALGQVDDRVTGLKAGGDDYLPKPYAFTELQARVEALARRPK 121

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++    T   G + +              PL  RE R+LEYLM + G+ V +T +   +
Sbjct: 122 SASQVETTYTVGDLTLDRMAHSCRRGDMEIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR K+        + + R  GY+I
Sbjct: 182 W-EYHFDPQTNVIDVHISRLRGKIDKGFDVPLLHTIRGAGYTI 223


>gi|205372140|ref|ZP_03224955.1| DNA-binding response regulator [Bacillus coahuilensis m4-4]
          Length = 267

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +      +    G + +   S         S R D+  I+  L   G    
Sbjct: 44  ILIIEDDEDINRLICNIVSKSGYTPKSAYSGTEAMIYLDSERWDMVLIDLMLP--GLSGE 101

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ +I+   S VP+I IS     Q+ +    +G DD + KP    E+ AR+ +  RR + 
Sbjct: 102 DILKIVTKESDVPIIIISAKLETQSKIAALRAGADDYITKPFDIEEVSARIDSCLRRYRD 161

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N      I +  D +   V G V  L  RE  IL  LM++  K   K  +F +
Sbjct: 162 IPSVSITNLMSNKDIVLDPDAKIVTVNGNVLKLTAREYEILLLLMSSPNKVFTKANLFES 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++       ++N +  H+S +R KL +       +++   +GY +
Sbjct: 222 VWNEP-FYGDDNTINVHLSNIRNKLSKANPNEVYIETVWGMGYKL 265


>gi|165869837|ref|ZP_02214495.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|254754585|ref|ZP_05206620.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|164714666|gb|EDR20185.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
          Length = 227

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +        +   ++  +S E    +      D+  ++  L        
Sbjct: 4   ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLP--KMNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IRA   +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    +      I +    R   +  E      +   +L + + N  + + K Q+F
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTK--DLLTFFVTNPNQVLNKEQLF 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222
             I+GL D A +   V  HI KLR+K+ R+      +++    GY  + 
Sbjct: 180 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 227


>gi|89255956|ref|YP_513318.1| two-component response regulator [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314439|ref|YP_763162.1| two-component response regulator [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501952|ref|YP_001428017.1| two-component response regulator [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954599|ref|ZP_06559220.1| two-component response regulator [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295311942|ref|ZP_06802766.1| two-component response regulator [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143787|emb|CAJ78992.1| Two-component response regulator [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129338|gb|ABI82525.1| two-component response regulator [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252555|gb|ABU61061.1| Two-component response regulator [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 228

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 12/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +G +     +G+ +   +  E  +    S   D+  ++  +  K    L
Sbjct: 3   ILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIK--TGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R IR    +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+ 
Sbjct: 61  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K  N     G              G + P+ ++E  +L  L+ N G+ V KTQ+  
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            IY   D+ ++ N +E H+  LRKK+      + + + R +GY
Sbjct: 181 EIYST-DKEMDTNTLEVHMHNLRKKI---NIPNFIQTIRGVGY 219


>gi|271499378|ref|YP_003332403.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342933|gb|ACZ75698.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 226

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 102/226 (45%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A + +        +G S     + +       S++     ++  L       +
Sbjct: 3   ILLVDDDAELGNMLCEYLTAEGFSTSQVMTGKEGIDGAMSSQYTAMILDIMLPD--MSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R +  +P+I ++        +   + G DD V KP + RE++AR+ A+ RR + 
Sbjct: 61  DVLRQVRRNHAIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYED 120

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + ++E       G + V    R  E +G+ F L   E  +LE LM +  + V K ++  
Sbjct: 121 KSEKSEDAGTVSYGDLVVCPSTRSSEWRGKAFDLTASEFNLLELLMRSSSRVVTKDELSE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              G   EA +   V+ HIS +R+KL      +  +++ R +GY I
Sbjct: 181 KCLGRRREAYD-RSVDVHISNIRQKLAALDECNLTIETVRSVGYRI 225


>gi|209809498|ref|YP_002265036.1| transcriptional regulator, response regulator [Aliivibrio
           salmonicida LFI1238]
 gi|208011060|emb|CAQ81477.1| transcriptional regulator, response regulator [Aliivibrio
           salmonicida LFI1238]
          Length = 225

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 101/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    ++        +G  ++  NS + +E L  +   +   I    +      L
Sbjct: 3   ILVIEDDQTTREFIAKALEQEGFIVD--NSGDGKEGLMMAISCEYQLIVLDRMLPNIDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IRA  +  P++ +S   S+   ++   +G DD + KP    E+LAR+  I RR +
Sbjct: 61  KILSAIRATGNNTPVLILSALDSVDQRVEGLIAGSDDYLTKPFALAELLARINIILRRNR 120

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +N  +   + +    +   +      L  +E  +L YL  +  + V++ ++F A 
Sbjct: 121 PIESFSNEIKINNLLINLRSQKVTINNNAISLQNKEFILLRYLAEHVNEVVSRMRLFEAA 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HI+KLRKKL      + +++ R  GY I
Sbjct: 181 WD-YHFDPKTNVIDVHIAKLRKKLEQGGAINLIETVRGAGYVI 222


>gi|148379888|ref|YP_001254429.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148289372|emb|CAL83468.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 228

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F D G  +    +    E ++   + D+  I   ++       
Sbjct: 5   ILIVDDEDDIVSFIKDYFEDQGYRV--ITASNGREAIEYCDK-DIDIILLDIMMPNIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR     P+I +S   S    +     G DD + KP   +E+ ARV A  RR K 
Sbjct: 62  QVCQKIRDKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + ++   G + +  + R    + E      +E  I+E L  +  +  +K QI+  +
Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQIFSKEQIYEKV 181

Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSID 221
           +G +D   + N V  HI K+R K ++  +  + + +   +GY  +
Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGYRWE 225


>gi|161520240|ref|YP_001583667.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353582|ref|YP_001949209.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|160344290|gb|ABX17375.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189337604|dbj|BAG46673.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 220

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G       +G +++     +       S    +  ++  L  +    L 
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRSTGYGLLLLDLGLPNR--DGLA 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +   +R   +  P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VLASLRRRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFALEELLARIRAVNRRHAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      GP+R+        +  +  PL  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 122 RAQTTLAIGPLRLDPVKHQVWLHDDEVPLSPKEFVLLHELMREPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDMIRTVRGVGYRI 216


>gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 235

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +   ++         + R D   ++  +   G     
Sbjct: 11  LVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMP--GMDGFG 68

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           L + +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 69  LLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGK 128

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + R +   I +  D R+    G++  L   E  +L Y M N G  ++K +I   
Sbjct: 129 VSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   E  VVES++S LR+K+ +      + + R +GY +
Sbjct: 189 VWN-YDFGGEVGVVESYVSYLRRKV-DTGETPLIHTLRGVGYVM 230


>gi|300859158|ref|YP_003784141.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686612|gb|ADK29534.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206852|gb|ADL11194.1| Two-component system, OmpR family, response regulator PhoP
           [Corynebacterium pseudotuberculosis C231]
 gi|302331414|gb|ADL21608.1| Two component system response regulator protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277104|gb|ADO27003.1| Two component system response regulator protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 237

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +         G  +   NS      +    + D   ++  +   G    
Sbjct: 11  ILVVDDEPNIVELLNVSLKFQGFDVATANSGVEALEIAKEFKPDAFILDVMMP--GMDGY 68

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   +RA     P++ ++   +++  +     G DD V KP    E++ R+  I RR  
Sbjct: 69  ELLPKLRAEGLDGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGS 128

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++      + +  D  +    G+V  L   E  +L  LM N    ++K +I  
Sbjct: 129 SVEMVEDDSTLVYADLTLNDDTHEVTKAGKVVDLSPTEFNLLRCLMLNAEVVMSKAKILD 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D   + NVVES+IS LR+K+        + + R +GY +
Sbjct: 189 HVW-HYDFGGDGNVVESYISYLRRKIDTH-DPQLIQTVRGVGYVL 231


>gi|300816027|ref|ZP_07096250.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300531234|gb|EFK52296.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
          Length = 229

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQLVPDVIILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 SSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|271964343|ref|YP_003338539.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507518|gb|ACZ85796.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 228

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A V+        + G ++   ++         + R D+  ++  L        
Sbjct: 4   LLLVEDDAQVRSALTRALTERGHAVASASAGMPGLTRAVADRPDLVVLDLGLPD--LDGC 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R++RA S VP+I  +        +   D+G DD V KP     + AR+ A+ RR + 
Sbjct: 62  EVLRMLRAVSAVPVIVATARDDEPEIVRALDAGADDYVVKPFSAAHLDARIRAVLRRGRD 121

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++        G + +    R+  + G    L  +E  +L YL    G+ V+K ++ + ++
Sbjct: 122 ADEGTAPVVVGGLHIEPAAREATLDGTPLGLTPKEFDLLHYLAVRPGQVVSKRELLTEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
                   +  V+ H+S LR+KL  +      + +   +G  +
Sbjct: 182 -RMAYGGADKTVDVHLSWLRRKLGESAQRPHYLQTVHGVGVKL 223


>gi|229028450|ref|ZP_04184572.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732899|gb|EEL83759.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 225

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFILLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|300361211|ref|ZP_07057388.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|300353830|gb|EFJ69701.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 246

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   +          +     +EG       + L  +  ED  AI   L+     
Sbjct: 8   ILIIEDEKNLARFVELELRHEKYETQVEG----NGRKGLDLALNEDFDAILLDLMLPDLN 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+
Sbjct: 64  GLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRV 123

Query: 120 KVS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++                   + + +  R          L +RE  +L  L+ N+   V 
Sbjct: 124 QIEKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIKNKNNVVT 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 184 REQLLNKIWGP-ESKIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYMV 233


>gi|170757163|ref|YP_001781483.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122375|gb|ACA46211.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 233

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 17/231 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEK 59
           +++DD   ++D           S+E  N ++  + L +       ++  I   ++     
Sbjct: 7   LVVDDEKEIRDAIEIYLR----SIESINIIKAADGLDALDILENNEIHVIILDIMMPKLD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +     IR  + +P+I +S        +   + G DD + KP +  E++ARV +  RR 
Sbjct: 63  GIRTCMKIRERNNIPIIMLSAKNEDTDKILGLNIGADDYIAKPFNPLELVARVNSQLRRY 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    V ++      + +        V G+   L   E  IL  L  N G+    +
Sbjct: 123 TNLGNFPKTVDDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVFPSS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           QI+  ++        EN V  HI +LRKK+  +      +     +GY ID
Sbjct: 183 QIYEYVWNEP-SFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKID 232


>gi|221069658|ref|ZP_03545763.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714681|gb|EED70049.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 249

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 96/236 (40%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQ-----SSAREDVSAIEAFLIG 55
            ++I+D   +        G++G+ +      +   E LQ     S    D+  ++  L  
Sbjct: 12  LLMIEDDVRLAQMVSDYLGNNGLEVTHMADGKSGLEQLQPSDGGSVELPDLVILDLMLPD 71

Query: 56  KGEKVLELPRIIRAHS----QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
                LE+ R IR+      QVP++ ++        +   + G DD + KP   RE+LAR
Sbjct: 72  --MDGLEVCRRIRSMPGAPAQVPVLMLTAKGDPMDRIIGLELGADDYLPKPFEPRELLAR 129

Query: 112 VAAIYRR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           + AI RR         +N     G + +  D R   V  +   L   +  +L  L    G
Sbjct: 130 IRAILRRKGGESQAAPANAVMRFGSLEIDRDARTVSVGEQQADLTSYQFDLLVALAERAG 189

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + + + QI  A+ G   EA +   ++ H+ ++R  +  +      + + R +GY  
Sbjct: 190 RVLTRDQIMEAVRGRELEAFD-RSIDVHMGRIRAAIEADPKAPKRILTVRGVGYVF 244


>gi|167461939|ref|ZP_02327028.1| hypothetical protein Plarl_05185 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 205

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVD 96
           L    + D+  ++  L       LE+ R +R ++  VP+I ++   ++   +   D G +
Sbjct: 12  LALQEKWDLILLDIMLPE--LSGLEVLRRLRQNNPTVPVILLTARDAVPDRVSGLDQGAN 69

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPR 151
           D V KP    E+LAR+  + R  +  N            + +    R+    G+   L  
Sbjct: 70  DYVTKPFAIEELLARIRNLLRITEQQNQPENEQTLHVDDLDMNLKSREVRRNGQWVELTP 129

Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211
           +E  +L+YLM ++G+   +  I S ++G +D   + N+V+ +I  LR+K+        + 
Sbjct: 130 KEFDLLQYLMEHKGEVRTREDIISDVWG-YDFVGDTNIVDVYIRYLRQKIEKGFKGKLIH 188

Query: 212 SKRFLGYSI 220
           + R +GY +
Sbjct: 189 TIRGIGYLL 197


>gi|71279117|ref|YP_269981.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H]
 gi|71144857|gb|AAZ25330.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H]
          Length = 232

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G      +          +   D+  ++  L   G+  L
Sbjct: 4   ILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLP--GKDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R I+  S + +I ++        L   + G DD + KP   RE++ARV  I RR+  
Sbjct: 62  TICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRINP 121

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                       +++T  + + +D     +      L   E  +L  L +  G+  +++Q
Sbjct: 122 PLTTGINTNIAKQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRIYSRSQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   +Y   +  V E  ++SHI KLRKKL   +   + V S   +GY +
Sbjct: 182 LIDRVY-QDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKL 229


>gi|42519507|ref|NP_965437.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|41583795|gb|AAS09403.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|329667746|gb|AEB93694.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii DPC 6026]
          Length = 242

 Score =  216 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   +          +     +EG       + L  +  ED  AI   L+     
Sbjct: 4   ILIIEDEKNLARFVELELRHEKYETQVEG----NGRKGLDLALNEDFDAILLDLMLPDLN 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+
Sbjct: 60  GLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRV 119

Query: 120 KVS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++                   + + +  R          L +RE  +L  L+ N+   V 
Sbjct: 120 QIEKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVT 179

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 180 REQLLNKIWGP-ESKIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYMV 229


>gi|254446238|ref|ZP_05059714.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198260546|gb|EDY84854.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 224

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D+  V +      G+ G +++     +   WL      D    +  +   G   + 
Sbjct: 4   LVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMP--GRDGVS 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R +  + P I ++    ++  +   D+G DD + KP    E+LAR+ AI RR + 
Sbjct: 62  LIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQRP 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             NN      +++               L  RE  +LE LM    + V+K+ I   ++  
Sbjct: 122 EMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +A   N+V+ +I  LR+K+  +     + + R +GY+I
Sbjct: 182 SYDAG-TNIVQVYIKYLREKIDQEGEPPLIQTARGIGYAI 220


>gi|123441540|ref|YP_001005526.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088501|emb|CAL11294.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 227

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G + E    L  +E +  +   + +A+   ++      +
Sbjct: 3   ILLVDDDVELGSMLREYLSGEGFTAE--LVLTGKEGIDGALSGNYTALILDIMLPDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R +R  S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 61  DVLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDE 120

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R  E QG+ F L   E  +LE L+ +  + V K ++ 
Sbjct: 121 HPDVPSGDDGVITHGDLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPDRVVTKDELS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 DKGLGRPREAYD-RSVDVHISNIRQKLAALPGSTLNIETVRSIGYRI 226


>gi|15894117|ref|NP_347466.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023722|gb|AAK78806.1|AE007599_2 Response regulator [Clostridium acetobutylicum ATCC 824]
 gi|325508244|gb|ADZ19880.1| Response regulator [Clostridium acetobutylicum EA 2018]
          Length = 229

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +    +        ++ +  +  ++  L       +
Sbjct: 4   ILVVDDDIEILNLVSIYLSNEGYEIIKATNGCEAISKINNEKPKLVILDVMLPD--IDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    VP+I +S        +    +G DD + KP +  E + RV  + RR  +
Sbjct: 62  EVCRKIREKLNVPIIILSAKVQNSDKIKGLLTGADDYITKPFNQLEFIVRVKTLLRRTYL 121

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            + R           G + +        +      L   E  IL+ L  N+G+  +  +I
Sbjct: 122 FDTRGNKDDLDDIVLGTLTIKKSTHTVLINNNEIILTATEFEILKLLAINKGRIFSAEEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           F  ++         N V  HIS LR K+  KL G   + +   +GY I+
Sbjct: 182 FETVWKEK-YFQSNNTVMVHISNLRDKIERKLNGEKLIHTVWGVGYKIE 229


>gi|129157|sp|P28257|YCF27_GALSU RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|73047|pir||RGKKOR regulatory protein ompR - red alga (Cyanidium caldarium)
           chloroplast
 gi|11279|emb|CAA44458.1| regulatory protein [Cyanidium caldarium]
 gi|254505|gb|AAA10400.1| OmpR-like protein [Cyanidium caldarium]
          Length = 255

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 95/227 (41%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + ++          G  +          +L      ++  ++  +        
Sbjct: 10  ILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHPNLVVLDVMMP--KIDGY 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + IR  S +P+I ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 68  GVCQEIRKESDIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRRVDK 127

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++     G +++  + +      E   L   E  +LE L++N G+ +++T I
Sbjct: 128 FYFSNTFTNSGIINIGFLKIDINRKQVYKNEERIRLTGMEFNLLELLISNSGEPLSRTTI 187

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
              ++G   +  ++  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 188 LEEVWGYTPERHLDTRVVDVHISRLRAKLEDDPSNPELILTSRGTGY 234


>gi|15641643|ref|NP_231275.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591202|ref|ZP_01678505.1| DNA-binding response regulator [Vibrio cholerae 2740-80]
 gi|121728924|ref|ZP_01681931.1| DNA-binding response regulator [Vibrio cholerae V52]
 gi|147675175|ref|YP_001217188.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|153216915|ref|ZP_01950679.1| DNA-binding response regulator [Vibrio cholerae 1587]
 gi|153801571|ref|ZP_01956157.1| DNA-binding response regulator [Vibrio cholerae MZO-3]
 gi|153819736|ref|ZP_01972403.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457]
 gi|153823944|ref|ZP_01976611.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|153826176|ref|ZP_01978843.1| DNA-binding response regulator [Vibrio cholerae MZO-2]
 gi|153830672|ref|ZP_01983339.1| DNA-binding response regulator [Vibrio cholerae 623-39]
 gi|227081790|ref|YP_002810341.1| DNA-binding response regulator [Vibrio cholerae M66-2]
 gi|229508249|ref|ZP_04397754.1| DNA-binding response regulator [Vibrio cholerae BX 330286]
 gi|229511512|ref|ZP_04400991.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|229515034|ref|ZP_04404494.1| DNA-binding response regulator [Vibrio cholerae TMA 21]
 gi|229518651|ref|ZP_04408094.1| DNA-binding response regulator [Vibrio cholerae RC9]
 gi|229520763|ref|ZP_04410186.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80]
 gi|229523733|ref|ZP_04413138.1| DNA-binding response regulator [Vibrio cholerae bv. albensis VL426]
 gi|229529329|ref|ZP_04418719.1| DNA-binding response regulator [Vibrio cholerae 12129(1)]
 gi|229607823|ref|YP_002878471.1| DNA-binding response regulator [Vibrio cholerae MJ-1236]
 gi|254226103|ref|ZP_04919700.1| DNA-binding response regulator [Vibrio cholerae V51]
 gi|254285418|ref|ZP_04960383.1| DNA-binding response regulator [Vibrio cholerae AM-19226]
 gi|254848758|ref|ZP_05238108.1| DNA-binding response regulator [Vibrio cholerae MO10]
 gi|255744933|ref|ZP_05418883.1| two-component system response regulator QseB [Vibrio cholera CIRS
           101]
 gi|262161782|ref|ZP_06030800.1| two-component system response regulator QseB [Vibrio cholerae INDRE
           91/1]
 gi|262169653|ref|ZP_06037344.1| two-component system response regulator QseB [Vibrio cholerae RC27]
 gi|262190570|ref|ZP_06048811.1| two-component system response regulator QseB [Vibrio cholerae CT
           5369-93]
 gi|297579217|ref|ZP_06941145.1| DNA-binding response regulator [Vibrio cholerae RC385]
 gi|298498279|ref|ZP_07008086.1| DNA-binding response regulator [Vibrio cholerae MAK 757]
 gi|9656150|gb|AAF94789.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546957|gb|EAX57105.1| DNA-binding response regulator [Vibrio cholerae 2740-80]
 gi|121628810|gb|EAX61272.1| DNA-binding response regulator [Vibrio cholerae V52]
 gi|124114064|gb|EAY32884.1| DNA-binding response regulator [Vibrio cholerae 1587]
 gi|124122898|gb|EAY41641.1| DNA-binding response regulator [Vibrio cholerae MZO-3]
 gi|125621338|gb|EAZ49675.1| DNA-binding response regulator [Vibrio cholerae V51]
 gi|126509727|gb|EAZ72321.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457]
 gi|126518538|gb|EAZ75761.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|146317058|gb|ABQ21597.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|148873852|gb|EDL71987.1| DNA-binding response regulator [Vibrio cholerae 623-39]
 gi|149740117|gb|EDM54282.1| DNA-binding response regulator [Vibrio cholerae MZO-2]
 gi|150424690|gb|EDN16626.1| DNA-binding response regulator [Vibrio cholerae AM-19226]
 gi|227009678|gb|ACP05890.1| DNA-binding response regulator [Vibrio cholerae M66-2]
 gi|227013546|gb|ACP09756.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|229333103|gb|EEN98589.1| DNA-binding response regulator [Vibrio cholerae 12129(1)]
 gi|229337314|gb|EEO02331.1| DNA-binding response regulator [Vibrio cholerae bv. albensis VL426]
 gi|229342318|gb|EEO07313.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80]
 gi|229343340|gb|EEO08315.1| DNA-binding response regulator [Vibrio cholerae RC9]
 gi|229347739|gb|EEO12698.1| DNA-binding response regulator [Vibrio cholerae TMA 21]
 gi|229351477|gb|EEO16418.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|229355754|gb|EEO20675.1| DNA-binding response regulator [Vibrio cholerae BX 330286]
 gi|229370478|gb|ACQ60901.1| DNA-binding response regulator [Vibrio cholerae MJ-1236]
 gi|254844463|gb|EET22877.1| DNA-binding response regulator [Vibrio cholerae MO10]
 gi|255737404|gb|EET92799.1| two-component system response regulator QseB [Vibrio cholera CIRS
           101]
 gi|262021887|gb|EEY40597.1| two-component system response regulator QseB [Vibrio cholerae RC27]
 gi|262028514|gb|EEY47169.1| two-component system response regulator QseB [Vibrio cholerae INDRE
           91/1]
 gi|262033557|gb|EEY52054.1| two-component system response regulator QseB [Vibrio cholerae CT
           5369-93]
 gi|297536811|gb|EFH75644.1| DNA-binding response regulator [Vibrio cholerae RC385]
 gi|297542612|gb|EFH78662.1| DNA-binding response regulator [Vibrio cholerae MAK 757]
 gi|327484248|gb|AEA78655.1| Two-component system response regulator QseB [Vibrio cholerae
           LMA3894-4]
          Length = 219

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    ++     G   E         +  ++   DV  ++  L       L
Sbjct: 3   ILVVEDDVQLGQQILSALEQTGWVPELAQDGIDALYRATAEEWDVIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQVGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFMHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  I ++RKK+      D + + R LGY +  N
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKI----APDVIKTVRGLGYQLHAN 219


>gi|332711236|ref|ZP_08431169.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332350050|gb|EGJ29657.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 224

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D    +   +G +++   +      L      D+  ++  L       L
Sbjct: 3   ILLVDDEIELTDPLSRVLTREGYTVDVAYNGASGNELACVGAYDLLILDWMLPH--ISGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+H +  P++ ++   ++   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  EICQQMRSHDATTPVLFLTAKDTVDDRVMGLDAGADDYLVKPFELRELLARVRALLRRSA 120

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++     R   G + +  + +     G    L  +E ++L Y M++ G  ++  QI+  
Sbjct: 121 ATDAHPSQRLRVGQLELDLNNQIAYRHGHPIELSEKESQLLGYFMSHVGLLLSHKQIYQH 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   +E  + N + + +  LR+K+  K     + +    GY  
Sbjct: 181 LW-PSEEIPKSNNLAALVRLLRRKIEIKGSAPLIHTVYGKGYRF 223


>gi|312962223|ref|ZP_07776715.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311283560|gb|EFQ62149.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 226

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 112/220 (50%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D  L+  G +A  G  G ++E   +      +  +A  D+  ++  L    E  L+
Sbjct: 4   LVCEDDELIASGIVAGLGAQGFTVERVATAAAARAMLKAATFDIMVLDLGLPD--EDGLK 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L + +R+   ++P++ ++   S+   +D   +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLQQLRSQGLEIPVLILTARDSVTNRVDGLQAGADDYLLKPFDLRELAARLQTLLRRMAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S N  E G +      R+  + G+   L RRE+ +L+ L+ N+G+ ++  Q+  ++YG 
Sbjct: 122 RSVNLIEHGRLSYDPSSRETLLGGQPVDLSRREQALLQALLHNKGRVLSSEQLKDSVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE +E N +  HI  LR+KL    G   V++ R LGY +
Sbjct: 182 NDE-LESNALNVHIHHLRRKL----GNGIVETVRGLGYRL 216


>gi|229514729|ref|ZP_04404190.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229348709|gb|EEO13667.1| transcriptional regulator [Vibrio cholerae TMA 21]
          Length = 224

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHV--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + IRA    V ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  ALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N+     + +           +   L  +E  ILE  +   G   ++ +I + ++
Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+  + +  N+V+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQDPL-TNIVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|224482624|gb|AAB36584.2| JadR1 [Streptomyces venezuelae ATCC 10712]
 gi|328886020|emb|CCA59259.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces venezuelae ATCC 10712]
          Length = 259

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 13/221 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++      +G +      G  ++   +      LQ+    D+  I+  L       LE
Sbjct: 46  LVVESCGKEGEGLVQGLRRHGHEVDRVETGGAA--LQAYEEADLVLIDLELPD--LDGLE 101

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR+   VP+I ++   S    +    +G DD + KP   RE++AR+ A+ RR +  
Sbjct: 102 VCRGIRSAGDVPVIAVTSRGSELDRVLGLQAGADDYLVKPYGFRELMARMEAVMRRARPR 161

Query: 123 NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + A T   GP+ + +  R   + G+   L R+E  +L  L ++    + + Q+   ++G
Sbjct: 162 PSTARTITRGPLHIDAAARQVTLDGQDVDLTRKEFDLLYLLASHPDTVIPRKQLMQQVWG 221

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++     V++H+S LR KL      D V + R +G+  
Sbjct: 222 ---DSWSRRTVDTHVSSLRNKL---GASDWVITIRGVGFRF 256


>gi|12484568|gb|AAG09631.1| CztR [Pseudomonas fluorescens]
          Length = 224

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++  ++      L      ++  ++  L   G+   
Sbjct: 3   ILVVEDEQKTADYLQQGLSESGYVVDCASNGIDGLHLAGQHAYELVILDVNLP--GKDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   +R +    ++ ++    L   +   D G DD + KP    E+LARV  + RR + 
Sbjct: 61  EVLEQLRRNGTQRVMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRSEH 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +               L  +E  +L+ LM   G+ + +TQI S ++ 
Sbjct: 121 IPQPEVFSVQDLELDPRRHRAYRGSRRIDLTTKEFALLQVLMRQTGEVLTRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  IS+LR K+ ++     + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSISRLRAKVDDQSEVKLIHTIRGVGYVLE 221


>gi|28210332|ref|NP_781276.1| two-component response regulator [Clostridium tetani E88]
 gi|28202769|gb|AAO35213.1| two-component response regulator [Clostridium tetani E88]
          Length = 234

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  +   ++   +E  +   RE+ S +   ++      L
Sbjct: 5   ILIVEDDEEIALCIKEYVEKTGYEVLWAST--GKEGYEEFKRENFSLLMIDIMMPEMDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  S VP++ IS        +   + G DD + KP    E+ AR+ +  RR + 
Sbjct: 63  TLCKNIRLTSDVPILIISAKNEDGYKVKGLNIGADDYITKPFSLVELQARLESHLRRYRR 122

Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       I        ++ +G+  EV G    L  +E  +L  +  N  K   K++++
Sbjct: 123 YNGIENNEHILKFKRGLIIYQEGKYVEVDGRNIHLTSKEFELLMLMAENPKKTFTKSELY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G  D     N V  HI +LR+KL+  +   + +++   +GY  
Sbjct: 183 EILWGEKDVHGN-NTVTVHIKELREKLKENIKNPNFIETVWGVGYKF 228


>gi|222094405|ref|YP_002528464.1| response regulator [Bacillus cereus Q1]
 gi|221238462|gb|ACM11172.1| response regulator [Bacillus cereus Q1]
          Length = 225

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR       D + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYR 219


>gi|113953975|ref|YP_731313.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113881326|gb|ABI46284.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 250

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 106/231 (45%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + +        +G  +E  +         +S    D+  ++  L       
Sbjct: 14  ILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDF--SG 71

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + IR+     P++ ++ +  +   +   D+GVDD + KP    E++AR+ A+ RR 
Sbjct: 72  VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131

Query: 120 KVSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +     A+           G + + ++ RD    G+   L  +E  +L +LM   GK + 
Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++I   ++G  D   ++N+++ +I  LR+K+ NK     + + R +G+ +
Sbjct: 192 RSEIMKGVWGE-DFYGDDNLLDVYIRYLRQKVENKDLPSLIHTVRGVGFIL 241


>gi|221218319|ref|YP_002524346.1| two component transcriptional regulator, winged-helix family
           [Rhodobacter sphaeroides KD131]
 gi|221163346|gb|ACM04312.1| two component transcriptional regulator, winged-helix family
           [Rhodobacter sphaeroides KD131]
          Length = 229

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ +       + G  ++    L   +   + A  D++ ++  L       +
Sbjct: 13  ILLIEDDEVLGNAVADHVAEAGHMVDRAKCLSEADDSLAVATYDLALLDLMLPD--GLGI 70

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R  RA     P+I ++    +   +D  ++G DD + KP    E+ AR+ ++ RR  
Sbjct: 71  PFLRKRRARGDSTPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYG 130

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N     G   V    R    +G   PL  RE  +LE  +A   + ++K Q+   ++ 
Sbjct: 131 GNPNPVVRLGAFEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLW- 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F+  +E N +E ++S+LR+KL +      +++ R LGY +
Sbjct: 190 SFEAEIESNAIEVYVSRLRRKLDHS----VIETVRGLGYRL 226


>gi|182413136|ref|YP_001818202.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840350|gb|ACB74602.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 240

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 96/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  +     +G       +       + +    V+ +   +        
Sbjct: 8   ILVVEDEAPIAETIVYALQTEGFVPRWVTTGRAAL-TELTIPPAVALVILDIGLPDANGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R I+  +  P+I ++   S    +   + G DD + KP   RE+ ARV A+ RR++ 
Sbjct: 67  DVFRQIQQRAPTPVIFLTARASEVDRIVGLELGADDYLTKPFSPRELTARVRAVLRRVQA 126

Query: 122 SNNRAETGP-----------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
               A                    +      +G+   L R E R+L  L+A  G+  ++
Sbjct: 127 VPTPAGPVAANAAPPATAKVWTHDVERCRISYRGQPLTLTRNEYRLLAVLLAAPGRVFSR 186

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            Q+ +  +     A++   V++H+  +R KLR+     DP+ + R LGYS+
Sbjct: 187 EQLMAQAWPDPGAALD-RTVDAHVKTVRAKLRDIASDADPILTHRGLGYSL 236


>gi|57207865|dbj|BAD86532.1| hypothetical protein [Staphylococcus aureus]
          Length = 232

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDD-GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +      +       ++  ++  E   +L+ + + D+  ++  L   G   
Sbjct: 7   ILVVEDDNDINQMLCKIIKKSKYYAIPAYSGTEALLYLE-NKQWDLVLLDLMLP--GISG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + +R HS  P+I IS     Q  +     G DD ++KP    E+ AR+ A+ RR +
Sbjct: 64  KEVLKQVREHSSTPVIIISAKNESQYKITSLRMGADDYISKPFDIEEVAARIDALLRRYQ 123

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   SN       I +  D +   V      L  RE +IL+ LM N  K  +K  +
Sbjct: 124 KSEREKNTSNQELVFLDIVLNIDSQKVIVNNFEVTLTLREFKILQLLMENPQKIYSKANL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           F  ++       +EN V  H+S LR KL      D  +++   +GY +
Sbjct: 184 FETVW-EDKFHGDENTVNVHMSNLRNKLAQNNATDTYIETIWGIGYRL 230


>gi|330821858|ref|YP_004350720.1| Heavy metal response regulator [Burkholderia gladioli BSR3]
 gi|327373853|gb|AEA65208.1| Heavy metal response regulator [Burkholderia gladioli BSR3]
          Length = 226

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G+S++          L      DV  ++  L        
Sbjct: 3   ILVVEDEPKTGAYLKKGLEESGMSVDLATDGADGLLLAEEEPYDVIVLDVMLPV--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +RA    P++ ++    ++  +   + G DD + KP    E+LARV  + RR   
Sbjct: 61  AVLQRLRASKATPVLFLTARDDVEDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + +    R          L  RE  +L  L   +G+ +++TQI S ++ +
Sbjct: 121 RESEWIAIGDLEIDVLRRRVRRGATRIELTPREFALLHLLARRQGEVLSRTQIASYVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR K+ ++     V + R +GY ++
Sbjct: 181 -NFDSDTNVVDVAIRRLRVKIDDEFPVKLVHTVRGVGYVLE 220


>gi|326802899|ref|YP_004320717.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650426|gb|AEA00609.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 238

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 99/239 (41%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDD-----GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK 56
            ++I+D   V +        +       S +G    ++ +  +     D+  ++  L  K
Sbjct: 3   ILMIEDNTSVAEMLSMFLDQEAGWESHFSYDGQEGYDYFKAHED--EIDIVILDLNLPSK 60

Query: 57  GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               + + + IR  +  V +I ++   S    +     G DD + KP     ++A++ A+
Sbjct: 61  --DGISICQDIRKSNQDVIIIMLTARDSESDQVLGLGLGADDYITKPFSPLTLVAKMHAL 118

Query: 116 YRRLKVSNNR----------AETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANR 164
            RR   ++NR           +T  + +  + R+    G+    L  +E  IL  L ++ 
Sbjct: 119 LRRRDANDNRESQDQEEKSLIKTKYLTIDPNTREASFHGQAIANLTPKEFDILALLASHP 178

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +   +  + ++++       +E  V++HI KLR+K+  K G   + +   +GY  D +
Sbjct: 179 KQVFTRDHLLTSLW-EDPFYGDERTVDAHIKKLRQKME-KNGPQAIRTVWGVGYKYDES 235


>gi|322434161|ref|YP_004216373.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161888|gb|ADW67593.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 226

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V          +  +++          L  +   D+  ++  L        
Sbjct: 3   ILVVEDEPKVSSFVQRGLVAERYAVDVSADGREGLELAQAFPYDLIILDMMLPR--MDGG 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  +  VP++ ++   S++  +  F++G DD + KP    E+L R  A+ RR  
Sbjct: 61  EILQRIRRTNTCVPVLMLTARDSVEDKVRMFENGADDYLTKPFAFAELLVRSKALLRRGP 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V+ ++    G + +    +  +  G+   L  +E  +LEYLM N  + +++  I   ++ 
Sbjct: 121 VNRSSTMTVGELELDRLTQQVKRAGKRIELTAKEYSLLEYLMQNAERVLSRNMIIEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + +  N+V+ ++  LR K+ +      + + R  GY I
Sbjct: 181 QSFDGI-TNIVDVYVRHLRAKVDDGHIIKLIRTVRGSGYMI 220


>gi|255281522|ref|ZP_05346077.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
 gi|255268010|gb|EET61215.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
          Length = 225

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 90/219 (41%), Gaps = 3/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       ++G  +   +          +    +  ++  L         
Sbjct: 7   LLVEDDQAIVENLTGFLKEEGFCVTAVSGQAAAMEALEAREFALVLLDVTLAQ--GNGYS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               I++   +P+I ++      + +   D G DD ++KP   RE+++R+  + RR   S
Sbjct: 65  TCTAIKSRGDIPVIFLTALGDEFSVVTGLDMGADDYISKPFRPRELVSRMRTVLRRSGRS 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               + G + V       E +G    L   E R+L   + +RG  + ++ +   I+    
Sbjct: 125 QRVMKIGNLSVDMVKGTVEKEGREIYLSAMEYRLLLIFLNHRGMVLTRSVLLEEIWDAAG 184

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           E V +N +  +I +LR+K+ +      +  + R +GY +
Sbjct: 185 EFVNDNTLTVYIKRLREKIEDDPANPQILLTVRGVGYRL 223


>gi|57866897|ref|YP_188567.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis
           RP62A]
 gi|242242696|ref|ZP_04797141.1| DNA-binding response regulator [Staphylococcus epidermidis W23144]
 gi|81674611|sp|Q5HPC3|ARLR_STAEQ RecName: Full=Response regulator ArlR
 gi|57637555|gb|AAW54343.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis
           RP62A]
 gi|242233832|gb|EES36144.1| DNA-binding response regulator [Staphylococcus epidermidis W23144]
 gi|319400771|gb|EFV88990.1| response regulator [Staphylococcus epidermidis FRI909]
          Length = 219

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++  N  +       S   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFIELELTHENYTVDIENDGKAGLDKALSKPYDLYILDLMLPN--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  +  P+I I+        +   D G DD + KP    E+LAR+ A+ RR + 
Sbjct: 62  EICRQIRQKTTTPIIIITAKSETYDKVAGLDYGADDYIVKPFDIEELLARIRAVLRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  D     V G    L + E  +L  L  NR   + + QI   ++G +
Sbjct: 121 DKDVLDINGIIIDKDAFKVTVNGHQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218


>gi|83312342|ref|YP_422606.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947183|dbj|BAE52047.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 225

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   A     G   + F ++        SA    + ++  L       L
Sbjct: 3   ILLVEDNDRLAEFISAGLKSAGFVPDVFGTVADATAAFESAAYQAAILDLGLPD--GDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  RA +   P++ ++    +   +   ++G DD + KP    E++AR+ AI RR  
Sbjct: 61  DIVRAQRAKAAPCPIMVLTARDRVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPG 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +     G +   + GR+  V G++  +PRRE  +LE+L+   GK V+K  +   +YG
Sbjct: 121 AALSVELSLGNLTFDTAGREVRVDGQLVAMPRREMEMLEHLLRRSGKVVSKRSLEEGLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD+ V  N VE  +S+LRK+L+       V + R +GY +
Sbjct: 181 -FDDDVTPNSVEVLVSRLRKRLQQTGAGVTVHTLRGIGYML 220


>gi|319652161|ref|ZP_08006280.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317396150|gb|EFV76869.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 230

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++G+++    + +  E L+      V  I   ++      + 
Sbjct: 7   LVVDDEKEIRDAIEIYLKNEGITV--LKAKDGIEALEILNENQVHLIILDVMMPKLDGIS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR    +P+I +S        +     G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATYKIREKKNIPIIILSAKTEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVTF 124

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      +   + +  + ++  V GE   +   E +I+E LM N G+  +  +I+  
Sbjct: 125 GTFEGVKKVIDLNGLMLDKEAKEVSVNGEPVKMTPIEYKIVELLMTNAGRVFSINEIYER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++       E N V  HI K+R+K+  +      +     +GY ++
Sbjct: 185 VWNEPYYNAE-NTVAVHIRKIREKIEIDPKNPRYLKVVWGIGYKME 229


>gi|28869098|ref|NP_791717.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28852338|gb|AAO55412.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 220

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G +L+     +    L +   E    +   L        
Sbjct: 3   LLLVEDDRAIGQGIRVALNTEGYTLDWLE--DGLSALHALRSEPFDLLLLDLGLPRMDGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA    +P++ ++        +   D+G DD + KP    E+ ARV A+ RR +
Sbjct: 61  DLLRQLRAEELALPVLILTARDGTANRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +    +    QG    +   E ++L  LM   GK V + ++ + +YG
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+ VE N +E  I  LRKKL      + + + R +GY ++
Sbjct: 181 WQDK-VESNTLEVLIHNLRKKL----STELIRTVRGVGYLLE 217


>gi|331005376|ref|ZP_08328760.1| putative two-component response regulator transcription regulator
           protein [gamma proteobacterium IMCC1989]
 gi|330420830|gb|EGG95112.1| putative two-component response regulator transcription regulator
           protein [gamma proteobacterium IMCC1989]
          Length = 236

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 104/235 (44%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRA---------LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++I+D           L  +GY     +DG +  G  + E  +  + +A + +  ++  
Sbjct: 3   ILVIEDDPRVHGFLQRGLKAEGYQTELAEDGATGLGL-ARELHKAFRDNAEKSLVILDIM 61

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           +       LE+ + +RA    +P++ ++        +    +G DD + KP    E+LAR
Sbjct: 62  MPE--MNGLEVCQQLRAEGFPLPILMLTALNDTDDRVTGLRTGADDYLGKPFDFEELLAR 119

Query: 112 VAAIYRRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           +  + RR      K    +     + +  D        E   L  +E  +LE +M + G+
Sbjct: 120 IEGLARRGLVAPDKQRAKQLSVADLHLDLDSMRVFRGDEEISLTAKELALLELMMRSVGR 179

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ +I S ++GL ++ +  N+V+ +I +LR K+        + ++R LGY ++
Sbjct: 180 LFSRERILSNVWGLNEDPL-TNIVDVYIRRLRNKIDTDNKPQLIHTQRGLGYRLE 233


>gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 220

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +         +    D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGPYDLVILDIMLP--GMNGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA   +VP++ ++         +  D+G DD + KP  +  ++ARV A+ RR  
Sbjct: 61  RVCAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRA 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + V +  R    +G    L  +E  +LE+L+   G+ VAK +I   ++
Sbjct: 121 RPGPSPVHVHGGLTVDTAARRVLREGVEVALTAKEFAVLEHLVLRPGEVVAKAEILDHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F    + N+VE +IS LR+KL    G + + + R  GY ++
Sbjct: 181 D-FAYDGDPNIVEVYISALRRKL----GAERIRTVRGAGYRLE 218


>gi|121593474|ref|YP_985370.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120605554|gb|ABM41294.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 242

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + D  +      G + E         + L +    D++ ++  L   G   
Sbjct: 7   ILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLP--GIDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---- 116
           LE+ R  R H+  P++ I+        L   + G DD + KP   RE++ARV A+     
Sbjct: 65  LEVLRQARRHTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLRRRA 124

Query: 117 -RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +      G + +        + G +  L  RE  +L  L+A+    +++ Q+  
Sbjct: 125 PPAQAAAQAELAYGALVLDEAQLQATLHGTLVALTPREWHLLRTLLAHPRSVLSRAQLLQ 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
             Y    +   E  V+SHI  LR+KLR  +  G D + S   +G++ D
Sbjct: 185 HAYPDSPQEPNERAVDSHIKNLRRKLRSADPAGHDWIRSVYGVGFAFD 232


>gi|238853787|ref|ZP_04644153.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
 gi|282851358|ref|ZP_06260723.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311110344|ref|ZP_07711741.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22]
 gi|238833596|gb|EEQ25867.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
 gi|282557326|gb|EFB62923.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311065498|gb|EFQ45838.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22]
          Length = 242

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   +          +     +EG       + L  +  ED  AI   L+     
Sbjct: 4   ILIIEDEKNLARFVELELRHEKYETQVEG----NGRKGLDLALNEDFDAILLDLMLPDLN 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+
Sbjct: 60  GLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRV 119

Query: 120 KVS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++                   + + +  R          L +RE  +L  L+ N+   V 
Sbjct: 120 QIEKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVT 179

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 180 REQLLNKIWGP-ESKIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYMV 229


>gi|154244330|ref|YP_001415288.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158415|gb|ABS65631.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 238

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 93/227 (40%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++       G +G  +         + L ++ R D+  ++  L   GE  L
Sbjct: 6   LLLVEDDREIRSLLADFLGREGYGVLAAEDGAAMDRLLATTRPDLVVLDLMLP--GEDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + R +RA S +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 64  SICRRLRARSGLPILMLTAKADDVDRIVGLEMGADDYLVKPFNPRELLARIRAVLRRADG 123

Query: 120 -----KVSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                +  + R          D R     +GE   L   E  +L   +    + +++ Q+
Sbjct: 124 AMPQPQFQSRRVAFAGFVADLDARSVGCAEGEALDLTSAEFELLACFLERPKRVLSRDQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGY 218
                G   +  +   ++  +S+LR+KL          + + R  GY
Sbjct: 184 LDWTRGRSADPFD-RTIDVSVSRLRRKLVAAAPEAALLIKTVRNGGY 229


>gi|261408286|ref|YP_003244527.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284749|gb|ACX66720.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 239

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            + +DD   +          +  + ++  +S +           D+  ++  L       
Sbjct: 6   ILAVDDEIGILKLLEITLRKENFTHIDTVSSGKGALQRVKEKSYDMILLDIMLPD--LSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR H+  P+I IS   +    L     G DD + KP +  E++AR+ AI RR K
Sbjct: 64  FELCTEIRKHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQK 123

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  N  +       G +    +     V+G+      +E  +L +   +        Q++
Sbjct: 124 IMENELQQNTAYDYGYLSFHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTAQLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++G  D   EE  V  HISKLRKK+ +       + + R +GY  
Sbjct: 184 ELVWGN-DVFGEEKTVTIHISKLRKKIGDDTRKPAIIVNLRGIGYKF 229


>gi|152994457|ref|YP_001339292.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835381|gb|ABR69357.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 229

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  + +        + G  ++  +  +   +        +  ++  L       +
Sbjct: 3   ILVVEDDIVTQGFIKKGLTEQGYQVDVASDGQDALFQALEGDYQLIILDRMLP--KLDGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R A   +P++ +S   S+   +     G DD + KP    E+LARV  + RR  
Sbjct: 61  TVLNTLRSAQKTLPVLILSALDSVDERVKGLREGGDDYLVKPFAFAELLARVEILIRRQP 120

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++    +   +   +++    R     G    L  +E +IL YLM +  + V +T +F A
Sbjct: 121 MAAVQQSTLLQVSDLKMDLLTRQVWRAGREISLQPKEFQILRYLMEHPKQVVTRTLLFEA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NV++ H+++LRKK+        +++ R +GY +
Sbjct: 181 VWD-YDFDPQTNVIDVHVARLRKKVETDDLPPILETIRGVGYRL 223


>gi|319950703|ref|ZP_08024601.1| response regulator receiver [Dietzia cinnamea P4]
 gi|319435619|gb|EFV90841.1| response regulator receiver [Dietzia cinnamea P4]
          Length = 217

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 13/213 (6%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
               DG  +      +    L      DV  ++  L   G   +E+ R +R HS   ++ 
Sbjct: 4   YLERDGFVVTITGDGQDAVDLARRIAPDVIVLDLGLP--GLDGIEVCRQVRTHSDAYIVM 61

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---------NNRAET 128
           ++       TL     G DD + KP   RE+ AR+ A+ RR + +         ++    
Sbjct: 62  LTARTEEVDTLIGLSVGADDYMTKPFSPRELSARIQAMMRRPRQATTGGGGKTPSHVHSI 121

Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188
           G + + + GR+  V G    L R E  IL  L  + G  V + Q+ +A++G  +   +++
Sbjct: 122 GQLTINTAGREVTVGGSAIGLTRTEFDILATLARDPGIVVTRAQLMAAVWGP-NWVGDDH 180

Query: 189 VVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +V+ HI  LR+KL +       V + R +GY +
Sbjct: 181 LVDVHIGHLRRKLGDDAAVGRYVRTVRGVGYRM 213


>gi|317509412|ref|ZP_07967031.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316252335|gb|EFV11786.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 239

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 13/210 (6%)

Query: 23  GVSLEGFNSLEFEE---WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI 78
           G+ L GF+ +  +     L +  ++   A+   +   G   + +   +RA    +P+  +
Sbjct: 27  GLRLSGFSVVTADNGAAALSAVHQQHPDALILDMNMPGLDGVSVVTALRAMGDDIPICVL 86

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--------NRAETGP 130
           S   S+   ++  ++G DD + KP    E++ARV A+ RR   +N               
Sbjct: 87  SARSSVGDRIEGLEAGADDYLTKPFVLGELVARVKALLRRPSTTNRPAPTVEFGVIHVDY 146

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V   GR   V  E   L +RE  +L  L  N G  +++T++   ++G +D A + NVV
Sbjct: 147 LSVDIPGRRVTVDDEPVELTKREFELLAALAENTGVVLSRTELLERVWG-YDFAADTNVV 205

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +  LRKKL  K     + + R  G+ +
Sbjct: 206 DVFVGYLRKKLELKGRHRLIHTVRGYGFVL 235


>gi|228919505|ref|ZP_04082869.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840148|gb|EEM85425.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 225

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|169825763|ref|YP_001695921.1| transcriptional regulatory protein SrrA [Lysinibacillus sphaericus
           C3-41]
 gi|168990251|gb|ACA37791.1| Transcriptional regulatory protein srrA (Staphylococcal respiratory
           response protein A) [Lysinibacillus sphaericus C3-41]
          Length = 216

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 84/187 (44%), Gaps = 3/187 (1%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
            + L     E V  +   ++       ++ + IR    VP+I ++        +   + G
Sbjct: 22  HDALIYLEEEHVDLVLLDIMMPEMDGFQVCQEIRKFWHVPIIMLTAKGEHSDIVKGLNIG 81

Query: 95  VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
            DD + KP    E+LAR+ A+ RR KV N       +R+  +  +   Q E  PL  +E 
Sbjct: 82  ADDYILKPFDEEELLARIHAVLRRTKVENKVVVFEGLRLDKESFELYFQQEAIPLTPKEF 141

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDS 212
            ++   +  + K  ++  + + ++G +  ++E+  ++SH+  LR+KLR       D + +
Sbjct: 142 SMMSLFLDYQNKVFSREHLINTVWG-YHVSIEDRTIDSHVRNLREKLRKSGFPADDYLQT 200

Query: 213 KRFLGYS 219
              +GY 
Sbjct: 201 VWGIGYK 207


>gi|15596634|ref|NP_250128.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100871|ref|ZP_01364789.1| hypothetical protein PaerPA_01001901 [Pseudomonas aeruginosa PACS2]
 gi|116049382|ref|YP_791815.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892691|ref|YP_002441560.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254234536|ref|ZP_04927859.1| hypothetical protein PACG_00396 [Pseudomonas aeruginosa C3719]
 gi|254239787|ref|ZP_04933109.1| hypothetical protein PA2G_00413 [Pseudomonas aeruginosa 2192]
 gi|296390196|ref|ZP_06879671.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313106435|ref|ZP_07792666.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9947387|gb|AAG04826.1|AE004573_5 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115584603|gb|ABJ10618.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166467|gb|EAZ51978.1| hypothetical protein PACG_00396 [Pseudomonas aeruginosa C3719]
 gi|126193165|gb|EAZ57228.1| hypothetical protein PA2G_00413 [Pseudomonas aeruginosa 2192]
 gi|218772919|emb|CAW28731.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310879168|gb|EFQ37762.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 229

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A   D       + G +++  ++      L      DV  ++  L   G     
Sbjct: 4   LIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVMLP--GVDGYG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK 120
           + R +R   Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRERRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGGNH 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+++     + +    R          L  +E  +L  L    G+ ++KT I   ++ +
Sbjct: 122 ESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVWDI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 182 -NFDTDTNVVEVAIKRLRAKLDGPFENKLLHTIRGMGYVLE 221


>gi|317056826|ref|YP_004105293.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449095|gb|ADU22659.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 227

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
             +++D   +      L    G   ++ F+  E    L  + R D+  ++  L  K    
Sbjct: 5   IAVVEDDREISSILKELLESSGYECVQAFDGDEASR-LLKNERFDMVLMDLMLPYK--NG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L   +R+ S+ P+I IS    ++T LD    G DD + KP    E+L R+  + RR  
Sbjct: 62  ERLIGELRSRSETPVIVISAKSMMETKLDVLRLGADDYIIKPFDIDEVLVRIEVVLRRSG 121

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    E G + + ++       G    L  +E  +L+  M +  K   K +++  ++
Sbjct: 122 AFAARPVLEVGDLSMNTEENTVSANGGQVQLTAKEFMLLKLFMEHPQKVYTKAELYETVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  E+N +  H+S LR KL+   G D +++   +GY +
Sbjct: 182 NEV-YYYEDNTINVHVSNLRSKLKKVSGKDHIETVWGIGYRL 222


>gi|197301304|ref|ZP_03166389.1| hypothetical protein RUMLAC_00035 [Ruminococcus lactaris ATCC
           29176]
 gi|197299622|gb|EDY34137.1| hypothetical protein RUMLAC_00035 [Ruminococcus lactaris ATCC
           29176]
          Length = 220

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++  +   G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSN-PLKINMEELHRYDLILLDIMMP--GMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    ++ + +HI  +R K  +   + P+ +   +GY  +
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWE 219


>gi|158321191|ref|YP_001513698.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141390|gb|ABW19702.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 233

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    +   +  F +    E ++   +  +  +   L+       
Sbjct: 8   ILVVDDEEDIVNVIKSYLEKEKYHV--FTAYNGNEAIERFHQNSIDFVILDLMLPDLSGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  SQVP++ ++    L   +   D G DD + KP   +E++ARV AI+RRL  
Sbjct: 66  EICKKIRIESQVPILMLTAKVDLTDRIYGLDIGADDYMIKPFSPKELVARVNAIWRRLGE 125

Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +A         + V  +  +   +G++  L   E +IL  L  N GK   + ++ + 
Sbjct: 126 DTVKANILSFSNEDLTVDLNKLEVRKKGKLIDLTSTEYKILSLLSKNTGKIFTREELVTK 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I G +D    +  +++HI  +R+K+ ++     + +    GY  
Sbjct: 186 ILG-YDYEGYDRTIDTHIKNIRQKIDDE-QNKYIVTVYGTGYKF 227


>gi|221369103|ref|YP_002520199.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides KD131]
 gi|221162155|gb|ACM03126.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides KD131]
          Length = 219

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G + +    +E      ++   D+  ++  L       L
Sbjct: 3   ILLVEDDPGLGGAIRDQISAEGHAADWMTGVEDALASVATTAYDLVLLDLNLPD--GSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R +RA  +  P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRYA 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + + R   GP+ +    R  E  G    L +RE  I E L+   G  V+KTQ+   +Y 
Sbjct: 121 GNPSPRLALGPLEIDIADRRIEGPGGEVTLSQREWAIFEALVKRPGSVVSKTQLEETLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E ++S+LRKKL    G D ++++R +GY +
Sbjct: 180 AFDAEVESNTIEVYVSRLRKKL----GRDRIETRRGMGYRL 216


>gi|194015253|ref|ZP_03053869.1| response regulator [Bacillus pumilus ATCC 7061]
 gi|194012657|gb|EDW22223.1| response regulator [Bacillus pumilus ATCC 7061]
          Length = 240

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 97/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +      +   +G     + +   +E L     ED+  +   ++  G+   
Sbjct: 6   ILIADDEKAIVKMVERVLKKEGFK-HIYKAYHADEALDIVKNEDIHLLLLDVMMPGKSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R +++ P+  ++   S    L  F  G DD + KP +  E++AR+ A   R  +
Sbjct: 65  DVLPEMRKYTKAPIFYLTARTSDVDKLTGFAQGADDYITKPFNPLELVARIKAHLNRTYI 124

Query: 122 S--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S         ++ E           + +V+GEV     +   +L+Y   +    ++K QI
Sbjct: 125 SLKEDHDEAQSQYEYAHFSYHPHSAELKVRGEVTACSAQLLSLLKYFCDHPNVVLSKDQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G+     + N V  HI KLR+K+  +    + + + R +GY  
Sbjct: 185 YEKVWGVP-SYGDNNTVMVHIRKLREKIELDPSQPEYIVTIRGMGYKF 231


>gi|307264989|ref|ZP_07546550.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919974|gb|EFN50187.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 229

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         D     E  +  E   +L    R  V  ++  L        
Sbjct: 4   ILVIEDDVNIAKFVKINL-DKYYETEIVHEGERALYLLERERFSVIVLDIMLPD--ISGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IRA     P++ ++        +   + G DD + KP + RE++ARV A+ RR+ 
Sbjct: 61  ELLKKIRAMKVNTPVVILTAKSQDVDKILGLELGADDYITKPFNPRELVARVRAVIRRVY 120

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N      N  E   I++        V+G+   L  RE +IL+ LM NR K V + ++ 
Sbjct: 121 EFNASSKSINLLEYDEIKLDLIQNKAFVRGKEVFLTPREFQILKMLMTNRKKVVKREELI 180

Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           ++I+G  D  + +   ++ HI +LR+K+  N      + ++  +GY    N
Sbjct: 181 ASIWG--DSFIEDTKTLDVHIRRLREKIEVNPDQPKYIHTQWGVGYYFGGN 229


>gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +  F++   EE L+   R     I   L   G   L
Sbjct: 8   ILVVDDEIEIVRALQRSLTAYGYEV--FSASSGEEALEEVVRHRPDLILLDLGLPGISGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S +P+I +S   + +  +   D G DD V+KP    E+LARV    R    
Sbjct: 66  EVCRKVREQSNLPIIVLSVKDTERDKVQALDLGADDYVSKPFGLNEVLARVRVALRHSAQ 125

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    + GP+RV    R  +V+G+   L   E  +L+ L+ N GK + +  + S +
Sbjct: 126 VKVGTEPVFQAGPLRVDFSQRLVQVEGKEVKLTPTEYDLLKALIRNSGKIMTRQMLLSQV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G      E + +  +I +LR+K+  +      + +   +GY  +
Sbjct: 186 WGTG-YGTEAHYLHVYIGQLRRKIEPDPAHPRFILTISGVGYRFN 229


>gi|296157300|ref|ZP_06840136.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892636|gb|EFG72418.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 260

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG +        +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLVRSLRQSAYAVDHVKTGVEADTALSMQTFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSNMPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR   V  +V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIITVRGLGYCLE 219


>gi|164686210|ref|ZP_02210240.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM
           16795]
 gi|164601812|gb|EDQ95277.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM
           16795]
          Length = 231

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 99/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  +  F + +  E L     E++  I   ++      +
Sbjct: 4   ILVVDDDKEIVESIEIYLRNEGYKV--FKAYDGLEALDILTNEEIHLILMDIMMPKLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +    IR    +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  KATIKIRQEKNIPIILVSAKGEDTDKILGLNIGADDYITKPFNLLELIARVKSNLRRYMN 121

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +   +G + + +  ++ +V G    +   E RILE L+ N+G+  +  +I
Sbjct: 122 FGNFNNETREDVLRSGGLELNTSTKEVKVDGNQVKVTPIEYRILELLLRNKGRVFSIDEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++      VE N V  HI ++R+K+  N      +     +GY I+
Sbjct: 182 YEKVWKEESFNVE-NTVAVHIRRIREKIEINPKEPRYLKVVWGIGYKIE 229


>gi|331671522|ref|ZP_08372320.1| transcriptional regulatory protein CreB [Escherichia coli TA280]
 gi|331071367|gb|EGI42724.1| transcriptional regulatory protein CreB [Escherichia coli TA280]
          Length = 229

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQICWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|258591886|emb|CBE68189.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family) [NC10
           bacterium 'Dutch sediment']
          Length = 227

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 96/227 (42%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G  +    + +  + L+   RE  S +   L+      L+
Sbjct: 4   LVVDDEKDITALVAYHLEREGFRV--LQAHDGLQALELVKRERPSLLVLDLMLPHLSGLD 61

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R        P++ ++        +   + G DD + KP   +E++ARV A+ RR 
Sbjct: 62  VCRRLRKEPDTARLPILMLTAKAEETDKVLGLELGGDDYLTKPFGPKELVARVKALIRRS 121

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +        + G + +  D     ++     L  +E  +L+ L+  +G+ + +  +   +
Sbjct: 122 EEVQGGEIVKAGSLEIDLDRYTVAIRKRAVELTPKEFDLLKALVLAKGRVLTREYLLDRV 181

Query: 178 YGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +G      +E   V+ H+ +LR+KL  +     + + + +GY  + +
Sbjct: 182 WGYERASEIESRTVDVHVRRLREKLGPEAAR--IVTVKSVGYRFNQD 226


>gi|170684107|ref|YP_001746856.1| DNA-binding response regulator CreB [Escherichia coli SMS-3-5]
 gi|218703147|ref|YP_002410776.1| DNA-binding response regulator CreB [Escherichia coli IAI39]
 gi|170521825|gb|ACB20003.1| transcriptional regulatory protein CreB [Escherichia coli SMS-3-5]
 gi|218373133|emb|CAR21027.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli IAI39]
          Length = 229

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|298247403|ref|ZP_06971208.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550062|gb|EFH83928.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 225

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +               +     E       +   D+  ++  L        
Sbjct: 3   ILVAEDHPSLGPDIQRGLERFHYVTDLATDGEDALASALATPYDLLILDVMLPS--LDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R AH  +P++ ++    +   +   D G DD + KP   RE+ ARV A+ RR K
Sbjct: 61  EVCRRLRSAHRTLPILFLTARGEIDDRVRGLDLGGDDYLVKPFVFRELEARVRALLRREK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   +   I + +  R+         L  RE  +LE+L+ +  + +++  I   ++ 
Sbjct: 121 SATSATLQFEDITLDTQTREAWRGSRQLTLSSREYALLEFLLHHPRQVLSRETIADHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   + N+++ +I  LR KL      D + + R +GY +
Sbjct: 181 G-EAPYQSNIIDVYIRYLRNKLCASGEPDVIQAIRGVGYQL 220


>gi|28211551|ref|NP_782495.1| regulatory component of sensory transduction system [Clostridium
           tetani E88]
 gi|28203992|gb|AAO36432.1| regulatory component of sensory transduction system [Clostridium
           tetani E88]
          Length = 228

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 89/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    + L   +G ++    +        +  + D++ I+  L        
Sbjct: 4   IFLVEDDKAIARNLMLLLRSEGFTVTHAPTRSEAFAALAGNKFDLALIDISLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    VP+I ++      + +   + G DD + KP   RE++AR+    R+   
Sbjct: 62  TVCTEIKETQDVPVIFLTASGDEASVVTGLNMGADDYITKPFRSRELIARIGTALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +  E   + V +     +  G    L   E R+L   ++N    + + ++   ++   
Sbjct: 122 SRSDFEIRGLHVDTASGIVKKNGNEVFLSALEYRLLLVFISNPKSIITRGRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+  +      + + R  GY +
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENDPASPQIILTVRGTGYRL 221


>gi|729183|sp|Q02540|COPR_PSESM RecName: Full=Transcriptional activator protein CopR
 gi|151181|gb|AAA25803.1| transcriptional activator [Pseudomonas syringae]
          Length = 227

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D             + G +++   +         +   D+  ++  +   G    
Sbjct: 3   LLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMP--GLDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A   VP++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EVIRRLRTAGQPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRRGS 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G ++V    R     G+   L  +E  +LE LM  +G+ ++K+ I S ++
Sbjct: 121 SLQVQTSLQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKIDDDFEVKLLHTCRGMGYMLE 222


>gi|182438267|ref|YP_001825986.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466783|dbj|BAG21303.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 225

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  +  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRQ--DGPTALDAGLQGGIDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    +P++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|104782714|ref|YP_609212.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
 gi|95111701|emb|CAK16425.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
          Length = 226

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+A           + G + E     +  + L  +   D+  ++  L   G    
Sbjct: 3   LLIVEDQAKTGQYLCQGLSEAGFATELATDGDTGQHLALTGDHDLLILDVMLP--GRNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +R      P++ ++   +++  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQSVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       +R+    R  E  G+   L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 NASQDTHLALADLRLDLIRRRAERSGQRIDLTAKEFALLELLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDSHPTKLIHTVRGMGYVLE 222


>gi|157163846|ref|YP_001461164.1| DNA-binding response regulator CreB [Escherichia coli HS]
 gi|191167432|ref|ZP_03029247.1| transcriptional regulatory protein CreB [Escherichia coli B7A]
 gi|193070613|ref|ZP_03051551.1| transcriptional regulatory protein CreB [Escherichia coli E110019]
 gi|194439266|ref|ZP_03071345.1| transcriptional regulatory protein CreB [Escherichia coli 101-1]
 gi|209921865|ref|YP_002295949.1| DNA-binding response regulator CreB [Escherichia coli SE11]
 gi|218698234|ref|YP_002405901.1| DNA-binding response regulator CreB [Escherichia coli 55989]
 gi|260871120|ref|YP_003237522.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O111:H- str. 11128]
 gi|293476662|ref|ZP_06665070.1| transcriptional regulatory protein creB [Escherichia coli B088]
 gi|300824440|ref|ZP_07104553.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|301024658|ref|ZP_07188307.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|307313667|ref|ZP_07593286.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309795675|ref|ZP_07690091.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331650886|ref|ZP_08351914.1| transcriptional regulatory protein CreB [Escherichia coli M718]
 gi|331666227|ref|ZP_08367108.1| transcriptional regulatory protein CreB [Escherichia coli TA271]
 gi|331680565|ref|ZP_08381224.1| transcriptional regulatory protein CreB [Escherichia coli H591]
 gi|157069526|gb|ABV08781.1| transcriptional regulatory protein CreB [Escherichia coli HS]
 gi|190902572|gb|EDV62306.1| transcriptional regulatory protein CreB [Escherichia coli B7A]
 gi|192956096|gb|EDV86561.1| transcriptional regulatory protein CreB [Escherichia coli E110019]
 gi|194421748|gb|EDX37756.1| transcriptional regulatory protein CreB [Escherichia coli 101-1]
 gi|209915124|dbj|BAG80198.1| two-component regulator protein [Escherichia coli SE11]
 gi|218354966|emb|CAV02211.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli 55989]
 gi|257767476|dbj|BAI38971.1| DNA-binding response regulator CreB in two-component regulatory
           system with CreC [Escherichia coli O111:H- str. 11128]
 gi|291321115|gb|EFE60557.1| transcriptional regulatory protein creB [Escherichia coli B088]
 gi|299880329|gb|EFI88540.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300523082|gb|EFK44151.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|306906490|gb|EFN37003.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|308120799|gb|EFO58061.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|315063700|gb|ADT78027.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli W]
 gi|323176305|gb|EFZ61897.1| transcriptional regulatory protein creB [Escherichia coli 1180]
 gi|323380218|gb|ADX52486.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323945811|gb|EGB41857.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323970848|gb|EGB66100.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|324118351|gb|EGC12245.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|331051340|gb|EGI23389.1| transcriptional regulatory protein CreB [Escherichia coli M718]
 gi|331066438|gb|EGI38315.1| transcriptional regulatory protein CreB [Escherichia coli TA271]
 gi|331072028|gb|EGI43364.1| transcriptional regulatory protein CreB [Escherichia coli H591]
          Length = 229

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQLVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 SSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|116669221|ref|YP_830154.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609330|gb|ABK02054.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 246

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G S+           L    R DV  ++  L   G   +E
Sbjct: 25  LVVDDEPSLSELMSMGLRMAGWSVAVAGDGPDAVKLAKEFRPDVLVLDVMLP--GFDGVE 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IRA   +VP + ++   ++Q  +    +G DD V KP    E+L R+  + +R  V
Sbjct: 83  LLTRIRAFAPEVPALFLTAKDAVQDRILGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSGV 142

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G + +  D R+    GE   L   +  +L YLM N  + V+K QI   ++
Sbjct: 143 AAMDTAELVVGDLVLNIDTREVTRAGEELQLTATQFELLRYLMENPRRVVSKAQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ + +    + + R  GY I
Sbjct: 203 D-YDFGGQANIVELYISYLRKKV-DAVHPPMIHTVRGAGYVI 242


>gi|302336274|ref|YP_003801481.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320114|gb|ADK68601.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 228

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++   + +    ++++   D   +   ++      +
Sbjct: 4   ILVVEDEEKIARFVELELRHEGYEVD--KAADGRSGVEAALSSDYDLVLLDVLLPQLNGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R     P+I ++   ++   +   D+G DD + KP    E+LAR+    +  + 
Sbjct: 62  EVLRRLRRQKDTPVILLTARDAVMDKVAGLDAGADDYITKPFAIEELLARIRVTLKHRES 121

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S+       + +  D  +  VQGE   L  RE  +L  LMA++G  + + ++ S
Sbjct: 122 GQLPSTSSATLAACGVTLDPDRHEVLVQGEPVALTNREFEVLHALMAHKGVVLTRARLAS 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              G ++   E N V+ HI+ LR K+ ++ G   + + R +GY +
Sbjct: 182 EALG-YEYVGETNNVDVHIAHLRSKIDDRFGIKLLTTVRGVGYVV 225


>gi|218246382|ref|YP_002371753.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218166860|gb|ACK65597.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 237

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 104/228 (45%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   +      +   +   ++   +      +L+    E   AI  +L+ K    
Sbjct: 3   LLLAEDEPDLGAIIQRMLNRENYLVDWVQDGATAWNYLEQEWIEYSVAIFDWLLPK-ISG 61

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LEL + +R     +P++ ++    +Q  +   D+G DD ++KP    E+LAR+ A+ RR 
Sbjct: 62  LELCQKLRQQGYSLPVLMLTAKSDIQDMVTGLDAGADDYLSKPFIKAELLARIRALQRRA 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEV---QGEV--FPLPRRERRILEYLMANRGKRVAKTQI 173
           L +  N+ + G + +            QG+    PL   E R+LEY M +  + + + Q+
Sbjct: 122 LHIQPNQLQIGLLTLDYAKSSVFTPNAQGQPQNIPLTANEFRLLEYFMKHPNQTLTRDQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++   D  +  NVV + I  LR+KL +    D +++    GY ++
Sbjct: 182 LAQLWETDDAPI-SNVVSARIRLLRRKLADYGCKDLIETVHGFGYRLN 228


>gi|168208958|ref|ZP_02634583.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170712748|gb|EDT24930.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 234

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       + G ++  F      E L+   +E++      ++        
Sbjct: 7   LVVEDEKEIAEAIEIYLKNQGYNV--FKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGAT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR    
Sbjct: 65  MVMKIRESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +   N    G + V SD ++  + G+V  +   E +IL+ L+ + G+  +  +
Sbjct: 125 LSMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 185 IYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 232


>gi|150017260|ref|YP_001309514.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903725|gb|ABR34558.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 223

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 106/223 (47%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +  ++   ++ E   ++ S+ + D+  ++  +       L
Sbjct: 5   ILIVEDELRIRFLLRDYLIKEDFNVFEASNGEEGLFVFSTQKIDLVLLDIMMPV--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R  S VP++ ++     +  L  +D G DD + KP   + ++A+V A+ +R + 
Sbjct: 63  TMLEKLREVSTVPVVLLTAKGEEEDKLQGYDYGADDYITKPFSPKVLIAKVKALLKRTRE 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + ++  +   + +     + ++ G+   L  +E  +L YL+ N G  +++  I   ++G
Sbjct: 123 DLDSSFQDFNGLTINKLSHEVKIDGKEIILSPKEYELLMYLVTNEGIALSRDNILDNVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + D   +   V++++ +LR+KL +K   + + + R  GY  + 
Sbjct: 183 I-DYYGDIRTVDTNVKRLREKLLDK--SNYIITVRGSGYKFEV 222


>gi|325679575|ref|ZP_08159151.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324108732|gb|EGC02972.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 240

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 92/231 (39%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      L   +G S+    + +  + L+  A  D+  I   ++      L
Sbjct: 8   ILVVDDDRDIVAAIAKLLELEGYSV--VKAYDGIDALEKLAENDIQLILIDVMMPRMDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +     G DD + KP +  E+ ARV +  RR   
Sbjct: 66  SAIMKIRDKRNIPIIVLSAKSEDTDKILGLSMGADDYITKPYNPMELTARVRSSLRRYMQ 125

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +  + G + +    +   V GE   L   E +ILE LM N G+  +   I
Sbjct: 126 LGDIGSINKTDVIKIGGLELDKSAKQLTVDGEPVRLTATELKILELLMENAGRVFSAEDI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +  ++     AVE N V  HI  +R+K+  +      +     +GY I+ N
Sbjct: 186 YRRVWNEDAYAVE-NTVMVHIRHIREKIEIDPKEPRYLKVVWGIGYKIEKN 235


>gi|229016961|ref|ZP_04173882.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229027724|ref|ZP_04183908.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|229035338|ref|ZP_04189244.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|229160663|ref|ZP_04288656.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228622798|gb|EEK79631.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228727951|gb|EEL79021.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228733586|gb|EEL84386.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744321|gb|EEL94402.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 230

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++     F  DG  +      +    L +    ++S +   ++        
Sbjct: 9   LIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMDGWS 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR +S VP+I ++       TL  F+ G DD V KP     +LAR   +++     
Sbjct: 69  VCRRIRKNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRLFKDTNQQ 128

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      IR+    R   + G+       E  IL  LM ++ + +++ Q+ + I+G
Sbjct: 129 VQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLSREQLITNIWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   ++  + +H+  +R KL  K     + +    GY  + 
Sbjct: 189 -YDYDGDDKTLTAHMRNVRLKLGEK--AKHIITVVRTGYKFEV 228


>gi|284031439|ref|YP_003381370.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283810732|gb|ADB32571.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 236

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G ++E  +  E   W       D   ++  L   G    
Sbjct: 3   ILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLP--GLSGD 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA     P++ ++     +      + G DD + KP  ++ ++AR+ A+ RR  
Sbjct: 61  EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       G + +    R          L RRE  +LEYLM N G   +K +I   ++G
Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             D   E NVVE ++  LR+K+    G   + + R  GY
Sbjct: 181 A-DFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGY 218


>gi|116630026|ref|YP_815198.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|116095608|gb|ABJ60760.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
          Length = 246

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            ++I+D   +          +     +EG       + L  +  ED  AI   L+     
Sbjct: 8   ILIIEDEKNLARFVELELRHEKYETQVEG----NGRKGLDLALNEDFDAILLDLMLPDLN 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+
Sbjct: 64  GLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRV 123

Query: 120 KVS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           ++                   + + +  R          L +RE  +L  L+ N+   V 
Sbjct: 124 QIEKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVT 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 184 REQLLNKIWGP-ESKIETNVVEVYVRYLRNKIDVPGRPSYIKTVRGTGYMV 233


>gi|307128989|ref|YP_003881005.1| DNA-binding heavy metal response regulator [Dickeya dadantii 3937]
 gi|306526518|gb|ADM96448.1| DNA-binding heavy metal response regulator [Dickeya dadantii 3937]
          Length = 223

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A   D       + G +++   +     +       D   ++  L   G    
Sbjct: 3   ILVIEDDAGTGDYLKKGLTEAGYAVDLARNGTDGLFNALEHGYDAIILDVMLP--GLNGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  ++R  S VP++ ++    L   +   + G DD + KP    E++ R+  + RR  V
Sbjct: 61  QIIEMLRKKSDVPVLFLTARDQLHDRIHGLELGADDYLIKPFSFTELVLRMRTLLRRGAV 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      +++    R    Q    PL  +E  +L  L+   G+ +++T I S ++ +
Sbjct: 121 READHYVVADLQLDVLRRKATRQDTAIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  + +LR K+        + + R +GY  +
Sbjct: 181 -NFDSDTNVVDVAVKRLRAKIDKPFDVKLIHTVRGIGYVCE 220


>gi|166030722|ref|ZP_02233551.1| hypothetical protein DORFOR_00396 [Dorea formicigenerans ATCC
           27755]
 gi|166029514|gb|EDR48271.1| hypothetical protein DORFOR_00396 [Dorea formicigenerans ATCC
           27755]
          Length = 220

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 99/221 (44%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++  +   G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSN-PLKLNMEELHRYDLILLDIMMP--GMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   +  +  P  + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    ++ + +HI  +R K  +   + P+ +   +GY  +
Sbjct: 180 FDSESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWE 219


>gi|114331551|ref|YP_747773.1| two component transcriptional regulator, winged helix family
           protein [Nitrosomonas eutropha C91]
 gi|114308565|gb|ABI59808.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas eutropha C91]
          Length = 223

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +LV  G      + G +++  N+    E        D+  ++  L       L
Sbjct: 3   ILVVEDDSLVASGIKQGLINAGYTVDVANTAGSAEIHLRDENFDLVVVDIGLPD--MDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R    ++P++ ++   S++ T+   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  MLVQRLRNRQMRLPVLVLTARGSMEDTIAGLDVGADDYMVKPFRLPELAARIRALIRRAH 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V++       + + +      + G+   L  RE  ILE L+    K V+K ++  ++ G
Sbjct: 121 SVASTELRHDQLILNTGSHTATLHGQPLFLTMREWTILEILLMASPKVVSKDKLLQSLAG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D+ +  N +E H+S+LR K+   LG   + + R +GY ID
Sbjct: 181 -WDKNITPNAIEVHVSRLRAKI--ALGGIGIRTVRGIGYRID 219


>gi|320094294|ref|ZP_08026085.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978760|gb|EFW10312.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 226

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +      G +G  +    S    E L +    D+  ++  L       L+
Sbjct: 5   LLVEDDPAISEPLARALGREGYEV--LASSTGREALTNVEGADLVVLDLGLPD--MDGLD 60

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           + R IRA   +VP++ ++        +   D+G DD V KP    E+LARV A+ RR   
Sbjct: 61  VAREIRADGGRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRHTA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + + +      IRV               L  +E  +L  L+   G  V + ++   ++G
Sbjct: 121 EPAESELRAQDIRVDVAAHRAFSGSTELQLTAKEFDLLRVLLREAGSVVERDELMREVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
             D       ++ H+S LR+KL ++      + + R +G+  +
Sbjct: 181 -SDPTGSTKTLDMHVSWLRRKLGDEASDPHYITTVRGMGFRFE 222


>gi|315179960|gb|ADT86874.1| DNA-binding response regulator [Vibrio furnissii NCTC 11218]
          Length = 219

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +  IA     G   E         +  +S   DV  ++  L       L
Sbjct: 3   ILVVEDDARLGEQIIASLEQTGWVPELSQDGIDALYRATSEEWDVIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       +G+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGDLSLDTRSSKVMWRGQAINLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I ++RKK+      + + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKI----APNIIKTVRGLGYQL 216


>gi|256060736|ref|ZP_05450900.1| DNA-binding response regulator [Brucella neotomae 5K33]
 gi|261324726|ref|ZP_05963923.1| FeuP [Brucella neotomae 5K33]
 gi|261300706|gb|EEY04203.1| FeuP [Brucella neotomae 5K33]
          Length = 229

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  ++     E   +   +   D   ++  L       +
Sbjct: 3   ILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYRGDTEPYDAVVLDIGLPQ--MDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +  R  R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y 
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R +GY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGMGYRM 216


>gi|258515258|ref|YP_003191480.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778963|gb|ACV62857.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 227

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A     G S   + + + EE L   +  + S +   L+  G+  L
Sbjct: 4   LMVVEDETPIALVLRAYLEKAGFS--TYIAADGEEALLKFSEINPSLLLLDLMLPGQDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   IR  S  P+I I+   +++  L  F  G DD + KP    E++ARV A+ RR   
Sbjct: 62  SVLEKIRKTSTCPVIVITARGAVKDRLQGFHLGADDYIAKPFDPDEVVARVKAVLRRPAR 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V  +  + G + V     +  ++G    L RR+  +L +L+ +  +  ++TQ+   ++G
Sbjct: 122 IVEADLVQFGHLTVDFTSCNAVLKGRNISLARRDWDLLSFLVRHPNQVFSRTQLLDYVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + D    +  V+  + +LR+ L++    +  + + R  GY +
Sbjct: 182 I-DYDGGDRAVDVAVKRLRQALKDWPSSEGEIATVRGTGYML 222


>gi|218549147|ref|YP_002382938.1| DNA-binding transcriptional regulator PhoP [Escherichia fergusonii
           ATCC 35469]
 gi|218356688|emb|CAQ89315.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia fergusonii ATCC 35469]
 gi|324113921|gb|EGC07895.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325497568|gb|EGC95427.1| DNA-binding transcriptional regulator PhoP [Escherichia fergusonii
           ECD227]
          Length = 223

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L++        D G  ++     +  ++  +    D++ I+  L    E  L 
Sbjct: 4   LVVEDNPLLRHHLKVQLQDAGHQVDDAEDAKEADYFLNEHEPDIAIIDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R++   +P++ ++     Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDISLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVIARMQALLRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  E+  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINNEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPDEVITTVRGQGYLFE 221


>gi|289428055|ref|ZP_06429759.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295131570|ref|YP_003582233.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|289158938|gb|EFD07138.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291377382|gb|ADE01237.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313763694|gb|EFS35058.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771712|gb|EFS37678.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793758|gb|EFS41789.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803070|gb|EFS44278.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808476|gb|EFS46943.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810535|gb|EFS48249.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313813831|gb|EFS51545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313816988|gb|EFS54702.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818098|gb|EFS55812.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313820957|gb|EFS58671.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823972|gb|EFS61686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827091|gb|EFS64805.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313831577|gb|EFS69291.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313839302|gb|EFS77016.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916553|gb|EFS80384.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918787|gb|EFS82618.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314920994|gb|EFS84825.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926984|gb|EFS90815.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932398|gb|EFS96229.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956707|gb|EFT00959.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959618|gb|EFT03720.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961803|gb|EFT05904.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964787|gb|EFT08887.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968705|gb|EFT12803.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974927|gb|EFT19022.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977978|gb|EFT22072.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314979631|gb|EFT23725.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314984610|gb|EFT28702.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988269|gb|EFT32360.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990356|gb|EFT34447.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079245|gb|EFT51248.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082292|gb|EFT54268.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083737|gb|EFT55713.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087378|gb|EFT59354.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089795|gb|EFT61771.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095569|gb|EFT67545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315100169|gb|EFT72145.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102492|gb|EFT74468.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|327326542|gb|EGE68330.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL096PA3]
 gi|327332809|gb|EGE74541.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL096PA2]
 gi|327447632|gb|EGE94286.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448505|gb|EGE95159.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449638|gb|EGE96292.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455816|gb|EGF02471.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456090|gb|EGF02745.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327457963|gb|EGF04618.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757131|gb|EGF70747.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757326|gb|EGF70942.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757510|gb|EGF71126.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328762085|gb|EGF75590.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL099PA1]
 gi|332676438|gb|AEE73254.1| putative two-component system response regulator [Propionibacterium
           acnes 266]
          Length = 243

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +   NS         + R DV  ++  L       LE
Sbjct: 21  LVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDF--DGLE 78

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR     V  + ++   +    +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 79  VMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSGA 138

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +       G + +  D R+    GE   L   E  +L Y M N  + ++K QI   +
Sbjct: 139 TEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDRV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ ++     + + R  GY +
Sbjct: 199 WN-YDFRGQANVVELYISYLRKKI-DRGHKPMIHTMRGAGYVL 239


>gi|169797190|ref|YP_001714983.1| transcriptional activator protein [Acinetobacter baumannii AYE]
 gi|213156019|ref|YP_002318064.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB0057]
 gi|293610351|ref|ZP_06692652.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|301347407|ref|ZP_07228148.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB056]
 gi|301513259|ref|ZP_07238496.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB058]
 gi|301595578|ref|ZP_07240586.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB059]
 gi|332850792|ref|ZP_08433024.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
 gi|332866185|ref|ZP_08436891.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
 gi|169150117|emb|CAM88011.1| Transcriptional activator protein [Acinetobacter baumannii AYE]
 gi|213055179|gb|ACJ40081.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB0057]
 gi|292827583|gb|EFF85947.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|332730451|gb|EGJ61768.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
 gi|332734759|gb|EGJ65854.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
          Length = 227

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D       + G   +        +    S   D+  ++  L        
Sbjct: 3   ILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLSGKHQALSEEYDLIILDVMLP--KLDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   IR     +P++ +S    ++  +   + G DD + KP    E+LAR+  + RR  
Sbjct: 61  NIINDIRKSGKTMPILFLSARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLRRGQ 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  +N      + +    R     G+   L  +E  ++E  M  RG+ + +  I S I+
Sbjct: 121 QKEDSNIITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVVEVAIKRLRNKIDSNFSPKLIQNIRGMGYVLEV 223


>gi|110799947|ref|YP_694916.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168216455|ref|ZP_02642080.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182624595|ref|ZP_02952377.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674594|gb|ABG83581.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|177910199|gb|EDT72587.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182381505|gb|EDT78984.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 234

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       + G ++  F      E L+   +E++      ++        
Sbjct: 7   LVVEDEKEIAEAIEIYLKNQGYNV--FKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGAT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR    
Sbjct: 65  MVMKIRESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +   N    G + V SD ++  + G+V  +   E +IL+ L+ + G+  +  +
Sbjct: 125 LNMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 185 IYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 232


>gi|312622039|ref|YP_004023652.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202506|gb|ADQ45833.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 234

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
            ++DD   + +         G S++ F + E        +  D+  ++  L        E
Sbjct: 7   YIVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSEPDIVILDIMLPD--IDGYE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR +S+VP+I +S        +   + G DD + KP    E+ AR+  I RR+  S
Sbjct: 65  ICKRIRKNSEVPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKILRRVNKS 124

Query: 123 ----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +N  E   I+V  + R+    G    L  +E      L+    K + +  I   I+
Sbjct: 125 PIKQDNVIEMFGIKVDFNQRNVFYNGTHIELSPKEFETFALLLKESNKVLKRNCILERIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G      +E +V+  I +LRKK+        + +   LGY ++
Sbjct: 185 GDP-ALYDERMVDDVIKRLRKKILQYNLPVEIKTMWGLGYKLE 226


>gi|217966593|ref|YP_002352099.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217335692|gb|ACK41485.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 220

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++               + DV  ++  L   G    
Sbjct: 3   ILVVEDDRKISHLLELELTHEGHEVKVVGDGYDALIEVEDFKPDVVILDIMLP--GLSGK 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R  +  + +I ++    ++  ++ F  G DD V KP    E+LAR+ A+ RR +
Sbjct: 61  EVAKRLRDKYPDLGIIMLTALGDVKDKVEAFKLGADDYVVKPFSIEELLARIQAVSRRKE 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     I ++ D     + G+   L + E  +L  L+ N    ++K +I S+I+G 
Sbjct: 121 KKEEIISKHGIELYVDQHRVFIDGKEVELSKTEFSLLYLLLKNENIVLSKEKILSSIWGD 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D+  E N+VE +I+ LRKKL  +     + + R +GYS 
Sbjct: 181 YDDERE-NLVEVYINYLRKKLGERG--KYIKTIRGVGYSF 217


>gi|296102850|ref|YP_003612996.1| DNA-binding transcriptional regulator PhoP [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057309|gb|ADF62047.1| DNA-binding transcriptional regulator PhoP [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 223

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQEMGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  LIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRREFSINNEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGYLFE 221


>gi|302558338|ref|ZP_07310680.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus
           Tu4000]
 gi|302475956|gb|EFL39049.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +         +    D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGTYDLLILDIMLP--GLNGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA    VP++ ++         +  D+G DD + KP  +  ++AR+ A+ RR  
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRP 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G ++V +  R   +  +   L  +E  +LE+L+   G+ V+K  I   ++ 
Sbjct: 121 AGASPVHVHGDLKVDTAARRVFLGEDEVALTAKEFSVLEHLVLRAGEVVSKADILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F    + N+VE +IS LR+KLR +L    + + R  GY ++
Sbjct: 181 -FAYEGDPNIVEVYISALRRKLRARL----IRTVRGAGYRLE 217


>gi|110803699|ref|YP_697777.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110684200|gb|ABG87570.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 234

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       + G ++  F      E L+   +E++      ++        
Sbjct: 7   LVVEDEKEIAEAIEIYLKNQGYNV--FKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGAT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR    
Sbjct: 65  MVMKIRERYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +   N    G + V SD ++  + G+V  +   E +IL+ L+ + G+  +  +
Sbjct: 125 LSMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 185 IYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 232


>gi|304397451|ref|ZP_07379329.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304355069|gb|EFM19438.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 235

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 5/225 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +    I             +  +    L+   +     +   L+  G   
Sbjct: 9   LILVVEDEPKLAQLMIDYLHASNYRTH--HIADGNAVLEYVRQTPPDLMLLDLMLPGTDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R IR HS++P+I ++        L   + G DD + KP   RE++ARV  I RR++
Sbjct: 67  LTLCREIRRHSELPIIMVTARTEEIDRLLGLELGADDYICKPFSPREVVARVKTILRRVR 126

Query: 121 VSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S    ++   +RV         + +   L   E R+L+ L    GK  ++ Q+ + +Y 
Sbjct: 127 RSAEEPQSASLLRVDESRFFASWREKPLDLTPAEFRLLKTLSLEPGKVFSREQLLNHLYD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223
            +   V +  ++SHI  LR+KL N     P + +   +GY  + +
Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLENLDSEQPFIRAVYGMGYRWEAD 230


>gi|260904234|ref|ZP_05912556.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 281

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V +       + G  ++     +  + L+S A      +       G    
Sbjct: 56  LLLVEDDPTVAEVARNYLRNAGFLVD--EVADGFQALESVAELVPDLVILDRKLPGIDGT 113

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R+ + VP++ ++   + +  +D  +SG DD + KP   RE++ RV +I +R   
Sbjct: 114 EVCRRLRSFTAVPVLMLTALSATEDRIDGLESGADDYLTKPFSPRELVLRVQSILKRTVD 173

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     GP  +   GR     G    +  RE  +L + + +  +   +  +  +++
Sbjct: 174 ESTPEAPFRLGPFHLDVSGRRVSRNGIPLEVSAREFDLLAFFLKHPHQVFDRETLLRSVW 233

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222
           G   E  + + +   + +LR+K+ +       + +    GY  D 
Sbjct: 234 GW--EIGDPSTITVTVRRLREKIEDDPSHAQFLSTVWGAGYRFDV 276


>gi|291286929|ref|YP_003503745.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884089|gb|ADD67789.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 236

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    L   +G ++   ++      L      D+  ++  L        
Sbjct: 9   ILVVDDDPDILEVLRLLLDLEGYNVITASNGITGLALARENTPDMIVLDLNLPD--INGQ 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +IIR+   +P++ +S   ++   +   + G DD + KP  + E++ARV AI RR + 
Sbjct: 67  QICKIIRSELDIPIMILSARDNVSDKVVCLEYGADDYMTKPFENIELIARVKAILRRSEK 126

Query: 122 SNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +N   E G         + +    R   ++ E   L  +E  IL Y +   G  +++  I
Sbjct: 127 NNTSQEAGTGDVLIFHHMTIDKASRQVFIKDEKVALTPKEYEILLYFVGKTGHVLSRDDI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + I+G          ++ HI  LR+K+  N    D V +   +GY I
Sbjct: 187 VNDIWGKNSIYSWSRSLDVHIKNLRQKIEINPKNPDIVKTVSGVGYKI 234


>gi|167566789|ref|ZP_02359705.1| DNA-binding heavy metal response regulator [Burkholderia
           oklahomensis EO147]
 gi|167573865|ref|ZP_02366739.1| DNA-binding heavy metal response regulator [Burkholderia
           oklahomensis C6786]
          Length = 230

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 92/220 (41%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D             + G   +             +   D++ ++  L G       
Sbjct: 4   LIVEDELKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGC--DGWT 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   + P++ ++    +   +   + G DD + KP    E+LARV ++ RR + +
Sbjct: 62  VVRELRRTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRRGQAT 121

Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +        + +    R    QG    L  +E  +L  LM  +G+ + ++ I S I+ + 
Sbjct: 122 DAPVLRVANLELDLIQRKARRQGNTILLTAKEFLLLWLLMRRQGEILPRSLIASQIWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVV++ I ++R K+        + + R +GY ++
Sbjct: 181 NFDSDSNVVDAAIKRVRAKVDQDYEPKLIHTVRGMGYVLE 220


>gi|153939788|ref|YP_001390660.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935684|gb|ABS41182.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
          Length = 230

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +  ++   +S++  +   +  + D+  ++  L        
Sbjct: 4   ILLVEDNMSLNRGIQFSLMKERYNVIATDSIKESQQKLNKEKVDLIILDINLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S +P+I ++   S    ++  D G DD + KP   RE+++RV AI RR   
Sbjct: 62  DYCLDIRKTSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRTSN 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N  ++  I  + +    E  G+   L + E ++L+Y M N  K ++K QI   ++ 
Sbjct: 122 DCDFNIIQSKDIVFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIENLWN 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           +  E + EN V  ++ ++R+K+       + + + R +GY 
Sbjct: 182 IDGEFINENTVAVNVRRIREKIEEVPSKPEYIQTIRGIGYV 222


>gi|331088794|ref|ZP_08337704.1| hypothetical protein HMPREF1025_01287 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330407317|gb|EGG86820.1| hypothetical protein HMPREF1025_01287 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 226

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D  ++  G       D  ++                + D+  ++  L       L
Sbjct: 9   IFLLEDDKILSKGISIALKKDEHTVTAVYGYLEALQQYQKQKYDLFLLDINLPD--GNGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S+ P++ ++   + +  L+ F  G DD ++KP     +  +V A+ +R  +
Sbjct: 67  EFCKKIRETSETPVLFLTANDTEEDMLEGFGVGCDDYISKPFSIEVLRKKVLAVLKRTGI 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R +   + +  +     ++G+   L   E ++L YLM NRG+ V K  +   ++ + 
Sbjct: 127 GKFRMKYRDLELDKEKCVVLMKGQEIHLTSTEYKLLLYLMENRGRVVTKAMLLEQLWDID 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V++N V  +I +LR+KL ++   + + +   +GY+ 
Sbjct: 187 GNFVDDNTVRVNIKRLRQKLHDE-KQEYIVTVFGMGYTF 224


>gi|312127220|ref|YP_003992094.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777239|gb|ADQ06725.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 234

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
            ++DD   + +         G +++ F + E        +  D+  ++  L        E
Sbjct: 7   YVVDDEKDILELVSEYLTQKGYAVKTFENGEGFLEEFEKSEPDIVILDIMLPD--IDGYE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR +S VP+I +S        +   + G DD ++KP    E+ AR+  I RR+   
Sbjct: 65  ICKRIRKNSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRRVNKG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +N  E   I+V    R+    G    L  +E      L+    K + ++ I   I+
Sbjct: 125 PTKQDNVIEMFGIKVDFSQRNVFYNGTHIELSPKEFETFALLLKESTKVLKRSYILERIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G      +E +V+  I +LRKK+        + +   LGY ++
Sbjct: 185 GDP-ALYDERMVDDVIKRLRKKILQYSLPVEIKTMWGLGYKLE 226


>gi|301163263|emb|CBW22813.1| putative two component system response regulator [Bacteroides
           fragilis 638R]
          Length = 224

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G S+   N  +           D+  ++  +       L
Sbjct: 4   ILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWEFIRQEAFDLLILDIIMP--KMNGL 61

Query: 62  ELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL R+ R       P+I ++   + +  +   DSG DD + KP   +E+ AR+ AI RR 
Sbjct: 62  ELCRLYRQQYGYLTPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILRRG 121

Query: 120 KVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +  +     + +  + R    +     L  +E R+LEY M ++G  +++  +   ++
Sbjct: 122 REDSVQQLVCDDLVLNCNTRRARRKEVEIELTVKEYRLLEYFMTHQGMVLSRLTLLKDVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +     NVV+ +++ LR K+  +     + +    GY +
Sbjct: 182 DK-NFDTNTNVVDVYVNYLRGKIDKEHDKKLIHTVVGSGYIM 222


>gi|22125379|ref|NP_668802.1| two-component transcriptional regulator [Yersinia pestis KIM 10]
 gi|45442400|ref|NP_993939.1| putative two-component system response regulator [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597038|ref|YP_071229.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808182|ref|YP_652098.1| putative two-component system response regulator [Yersinia pestis
           Antiqua]
 gi|108811547|ref|YP_647314.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|145599382|ref|YP_001163458.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149365137|ref|ZP_01887172.1| putative two-component system response regulator [Yersinia pestis
           CA88-4125]
 gi|162419859|ref|YP_001607146.1| transcriptional regulatory protein CpxR [Yersinia pestis Angola]
 gi|165926850|ref|ZP_02222682.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936048|ref|ZP_02224618.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011209|ref|ZP_02232107.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212464|ref|ZP_02238499.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398895|ref|ZP_02304419.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422720|ref|ZP_02314473.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424434|ref|ZP_02316187.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170023666|ref|YP_001720171.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186896121|ref|YP_001873233.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930047|ref|YP_002347922.1| putative two-component system response regulator [Yersinia pestis
           CO92]
 gi|229838590|ref|ZP_04458749.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895658|ref|ZP_04510829.1| putative two-component system response regulator [Yersinia pestis
           Pestoides A]
 gi|229899156|ref|ZP_04514299.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901816|ref|ZP_04516938.1| putative two-component system response regulator [Yersinia pestis
           Nepal516]
 gi|270490006|ref|ZP_06207080.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504751|ref|YP_003568813.1| putative two-component system response regulator [Yersinia pestis
           Z176003]
 gi|21958263|gb|AAM85053.1|AE013751_5 transcriptional regulator in 2-component system [Yersinia pestis
           KIM 10]
 gi|45437265|gb|AAS62816.1| putative two-component system response regulator [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51590320|emb|CAH21957.1| putative two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775195|gb|ABG17714.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108780095|gb|ABG14153.1| putative two-component system response regulator [Yersinia pestis
           Antiqua]
 gi|115348658|emb|CAL21602.1| putative two-component system response regulator [Yersinia pestis
           CO92]
 gi|145211078|gb|ABP40485.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149291550|gb|EDM41624.1| putative two-component system response regulator [Yersinia pestis
           CA88-4125]
 gi|162352674|gb|ABX86622.1| transcriptional regulatory protein CpxR [Yersinia pestis Angola]
 gi|165916193|gb|EDR34800.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921201|gb|EDR38425.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989887|gb|EDR42188.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206395|gb|EDR50875.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958427|gb|EDR55448.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051399|gb|EDR62807.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056316|gb|EDR66085.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750200|gb|ACA67718.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186699147|gb|ACC89776.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681745|gb|EEO77839.1| putative two-component system response regulator [Yersinia pestis
           Nepal516]
 gi|229687558|gb|EEO79631.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694956|gb|EEO85003.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701464|gb|EEO89492.1| putative two-component system response regulator [Yersinia pestis
           Pestoides A]
 gi|262362813|gb|ACY59534.1| putative two-component system response regulator [Yersinia pestis
           D106004]
 gi|262366737|gb|ACY63294.1| putative two-component system response regulator [Yersinia pestis
           D182038]
 gi|270338510|gb|EFA49287.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355210|gb|ADE65551.1| putative two-component system response regulator [Yersinia pestis
           Z176003]
 gi|320014446|gb|ADV98017.1| putative two-component system response regulator [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 227

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +        G +G + +  + L  +  +  +   D +A+   ++      +
Sbjct: 3   ILLVDDDLELGTMLKEYLGGEGFTAK--HVLTGKAGIDGALSGDYTALILDIMLPDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR + 
Sbjct: 61  DVLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFEE 120

Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R  E QG+ F L   E  +LE L+ +  + V K ++ 
Sbjct: 121 QPTLSSIDSGIITQGGLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDELS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 DKGLGRPREAYD-RSVDVHISNIRQKLAALPGNHLNIETVRSIGYRI 226


>gi|153808092|ref|ZP_01960760.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185]
 gi|149128995|gb|EDM20211.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185]
          Length = 229

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 103/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  ++  NS E    +  S+   +          G K+ 
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMDISSYHLILLDVMMGEISGFKMA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR   
Sbjct: 66  NMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTAT 125

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +  R     + +    +   + GE   L ++E  IL  L+ N+G+  ++  I + 
Sbjct: 126 AETERAPERLVYQSLVIDITKKKVSIDGEEVQLTKKEFEILLLLVQNKGRVFSREDILTR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 186 IW-SNEVYVLDRTIDVNITRLRKKIGEYG--KCIVTRLGYGYCFE 227


>gi|325288326|ref|YP_004264507.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324963727|gb|ADY54506.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 244

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D + ++         +G  ++ F + E           ++  ++  L       
Sbjct: 5   LIYVVEDESHIQQLVKYNLEKEGYRVKAFGNGESFLQETRLKVPELFLLDIMLPD--IDG 62

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LEL +++R +    +VP+I ++        +   + G DD + KP   RE++ARV A+ R
Sbjct: 63  LELCKLLRKNPATHKVPIILLTAKGEEFDKVLGLEIGADDYITKPFSIREMIARVKAVLR 122

Query: 118 RLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R+             G I +    R+         L  +E  +L+ L+ N+G+ +++  +
Sbjct: 123 RVTEIGAEEEEEIRQGDIVMNCSRREVYKGSRQLDLTLKEFELLKLLLLNKGRVLSRDML 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              I+G ++   E   V+ HI  LR+K+         +++ R +GY  
Sbjct: 183 LEKIWG-YEYQGETRTVDVHIRYLRQKIEEDDNNPLYIETVRGIGYRF 229


>gi|295098193|emb|CBK87283.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 240

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                      P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 QRELQVLDAQSPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL         + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDADQSFIRAVYGVGYRWEAD 235


>gi|156934385|ref|YP_001438301.1| DNA-binding transcriptional regulator PhoP [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156532639|gb|ABU77465.1| hypothetical protein ESA_02216 [Cronobacter sakazakii ATCC BAA-894]
          Length = 223

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++  +    DV+ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLSELGHQVDAAEDAKEADYYLNEHLPDVAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  RA    +P++ ++     Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRASEISLPVLVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVVARMQALLRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P  V    R+  +   +  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISMPPFVVDLSRREVTINDNLIRLTAFEYTIMETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAEYPGEAITTVRGQGYRFD 221


>gi|330898407|gb|EGH29826.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 229

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     +      G+ G  ++          L    R D+   +  L   G    
Sbjct: 3   ILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVQDVMLP--GIDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++  ++RA   VP++ ++    LQ  +   + G DD + KP    E+L R+  I RR + 
Sbjct: 61  QIIEVLRARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGVV 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R    Q +V  L  +E  +L  L+   G  +++ QI S ++ +
Sbjct: 121 READHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +   + NVV+  I +LR K+        + + R +GY  + 
Sbjct: 181 -NFDSDTNVVDVAIKRLRSKVDLPYPVKLIHTVRGIGYVCEV 221


>gi|311108903|ref|YP_003981756.1| transcriptional activator protein IrlR 5 [Achromobacter
           xylosoxidans A8]
 gi|310763592|gb|ADP19041.1| transcriptional activator protein IrlR 5 [Achromobacter
           xylosoxidans A8]
          Length = 224

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D       +    ++                 DV  ++  L   G    
Sbjct: 3   ILLIEDERKLADYVRKGLTEHNYVVDVARDGIDGRHAAIEGDYDVVVLDVMLP--GVDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R H Q P++ ++    ++  +   + G DD + KP    E+LAR+ A+ RR + 
Sbjct: 61  GVLADLRKHKQTPVLMLTARDKVEDRVRGLEGGADDYLVKPFAFSELLARIQALLRRGRG 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   +   + +    R  +  G    L  +E  +L  ++   G+ +++T +   ++ +
Sbjct: 121 QESTLLKLADLEMDLARRKAQRGGMRLDLTAKEFTLLTLMLRRHGQVLSRTVLAEQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVIEVAVRRLRAKIDDPFETKLLHTVRGMGYVLE 220


>gi|210622429|ref|ZP_03293161.1| hypothetical protein CLOHIR_01109 [Clostridium hiranonis DSM 13275]
 gi|210154245|gb|EEA85251.1| hypothetical protein CLOHIR_01109 [Clostridium hiranonis DSM 13275]
          Length = 239

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 91/236 (38%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + G ++  F +    E L+    E++      ++      +
Sbjct: 6   ILVVEDEKEIAEAVEIYLLNQGYNV--FKAFNGMEGLKVLENEEIHLAIVDIMMPVMDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
                 R +   P+I +S        +   + G DD V KP    E+LARV +  RR   
Sbjct: 64  TFTMKARENHNFPIIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTK 123

Query: 121 --------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
                         V+ N    G + +  D ++  V G    L   E +IL  L+ N G+
Sbjct: 124 YMNIQKASSTEVEAVNENIYTIGGLELNDDTKEVSVDGNPVRLTPIEFKILGLLIKNPGR 183

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
                +I+  ++   + A+  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 184 VFPAEEIYERVWN--EAAINTDTVMVHVRNIREKIELDPKNPRYLKVVWGVGYKIE 237


>gi|53718414|ref|YP_107400.1| response regulator transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|126452265|ref|YP_001065094.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|254261284|ref|ZP_04952338.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|52208828|emb|CAH34767.1| response regulator transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|126225907|gb|ABN89447.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|254219973|gb|EET09357.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 247

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 219


>gi|254412739|ref|ZP_05026512.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180474|gb|EDX75465.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 235

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 105/228 (46%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKV 60
           +L++D   +          +   ++   +  E   +L+    +  ++  +  L       
Sbjct: 4   LLVEDEPDLGAAIKRALSLEKYVVDWVVDGTEAWGYLENQEMQYTLAIFDWLLPE--LSG 61

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL R +RA  S +P++ ++    L+  +   D+G DD + KP    E+LARV A+ RR 
Sbjct: 62  LELLRRLRANKSSLPVLMLTAKDRLEDRVAGLDAGADDYLVKPFRMAELLARVRALQRRS 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            ++   + + G + +    R         + +  PL  +E ++LEY M +  + V   QI
Sbjct: 122 PQLQPQQLQVGSLTLDCGTRTVYRVAAKGEKQEVPLTNKEYQLLEYFMRHPNQVVTSDQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++ +  E +  NVV + I  LR+KL +     P+++   +GY ++
Sbjct: 182 RNQLWEVSAEPL-SNVVAAQIRLLRRKLESIGCAIPIETVHGIGYRLN 228


>gi|261406712|ref|YP_003242953.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283175|gb|ACX65146.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       +D   ++     E    +          ++  +   G+   
Sbjct: 7   ILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMP--GQNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R IRA S VP++ +S        +     G DD + K     EI+ARV A+ RR   
Sbjct: 65  ELCRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSAT 124

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +     + G +R+    R+  V G    L  +E  +L     +        Q+ +  
Sbjct: 125 RRPMEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQLLAKF 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   D   + + +  H+S+LR+K+  +      + +   +GY  +
Sbjct: 185 W---DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFE 226


>gi|148379883|ref|YP_001254424.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931457|ref|YP_001384180.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935275|ref|YP_001387721.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226949220|ref|YP_002804311.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148289367|emb|CAL83463.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927501|gb|ABS33001.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931189|gb|ABS36688.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226840740|gb|ACO83406.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 233

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 17/231 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEK 59
           +++DD   ++D           S+E  N ++  + L +       ++  I   ++     
Sbjct: 7   LVVDDEKEIRDAIEIYLR----SIESINIIKAADGLDALDILENNEIHVIILDIMMPKLD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +     IR  + +P+I +S        +   + G DD + KP +  E++ARV +  RR 
Sbjct: 63  GIRTCMKIRERNNIPIIMLSAKNEDIDKILGLNIGADDYIAKPFNPLELVARVNSQLRRY 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      ++      + +        V G+   L   E  IL  L  N G+    +
Sbjct: 123 TNLGNFPKTADDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVFPSS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           QI+  ++        EN V  HI +LRKK+  +      +     +GY ID
Sbjct: 183 QIYEYVWNEP-SFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKID 232


>gi|21909780|ref|NP_664048.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|50913656|ref|YP_059628.1| response regulator CsrR [Streptococcus pyogenes MGAS10394]
 gi|56808741|ref|ZP_00366459.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71902940|ref|YP_279743.1| response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910096|ref|YP_281646.1| response regulator [Streptococcus pyogenes MGAS5005]
 gi|94987913|ref|YP_596014.1| response regulator [Streptococcus pyogenes MGAS9429]
 gi|94989788|ref|YP_597888.1| response regulator CsrR [Streptococcus pyogenes MGAS10270]
 gi|94993673|ref|YP_601771.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
 gi|139474380|ref|YP_001129096.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|3599371|gb|AAC64935.1| CsrR [Streptococcus pyogenes]
 gi|21903965|gb|AAM78851.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|50902730|gb|AAT86445.1| Response regulator CsrR [Streptococcus pyogenes MGAS10394]
 gi|71802035|gb|AAX71388.1| response regulator [Streptococcus pyogenes MGAS6180]
 gi|71852878|gb|AAZ50901.1| response regulator [Streptococcus pyogenes MGAS5005]
 gi|84578944|dbj|BAE72910.1| two-component response regulator mutated protein M3-2
           [Streptococcus pyogenes]
 gi|94541421|gb|ABF31470.1| response regulator [Streptococcus pyogenes MGAS9429]
 gi|94543296|gb|ABF33344.1| Response regulator CsrR [Streptococcus pyogenes MGAS10270]
 gi|94547181|gb|ABF37227.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
 gi|134272627|emb|CAM30894.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|190350983|gb|ACE75888.1| CovR [Streptococcus pyogenes]
 gi|190350986|gb|ACE75890.1| CovR [Streptococcus pyogenes]
 gi|190350989|gb|ACE75892.1| CovR [Streptococcus pyogenes]
 gi|190350992|gb|ACE75894.1| CovR [Streptococcus pyogenes]
 gi|190350995|gb|ACE75896.1| CovR [Streptococcus pyogenes]
 gi|190350998|gb|ACE75898.1| CovR [Streptococcus pyogenes]
 gi|190351001|gb|ACE75900.1| CovR [Streptococcus pyogenes]
 gi|190351004|gb|ACE75902.1| CovR [Streptococcus pyogenes]
 gi|190351007|gb|ACE75904.1| CovR [Streptococcus pyogenes]
 gi|190351010|gb|ACE75906.1| CovR [Streptococcus pyogenes]
 gi|190351013|gb|ACE75908.1| CovR [Streptococcus pyogenes]
 gi|190351016|gb|ACE75910.1| CovR [Streptococcus pyogenes]
 gi|190351019|gb|ACE75912.1| CovR [Streptococcus pyogenes]
 gi|190351022|gb|ACE75914.1| CovR [Streptococcus pyogenes]
 gi|190351025|gb|ACE75916.1| CovR [Streptococcus pyogenes]
 gi|190351028|gb|ACE75918.1| CovR [Streptococcus pyogenes]
 gi|190351031|gb|ACE75920.1| CovR [Streptococcus pyogenes]
 gi|190351034|gb|ACE75922.1| CovR [Streptococcus pyogenes]
 gi|190351037|gb|ACE75924.1| CovR [Streptococcus pyogenes]
 gi|190351040|gb|ACE75926.1| CovR [Streptococcus pyogenes]
 gi|190351043|gb|ACE75928.1| CovR [Streptococcus pyogenes]
 gi|190351046|gb|ACE75930.1| CovR [Streptococcus pyogenes]
 gi|190351049|gb|ACE75932.1| CovR [Streptococcus pyogenes]
 gi|190351052|gb|ACE75934.1| CovR [Streptococcus pyogenes]
 gi|190351055|gb|ACE75936.1| CovR [Streptococcus pyogenes]
 gi|190351058|gb|ACE75938.1| CovR [Streptococcus pyogenes]
 gi|190351061|gb|ACE75940.1| CovR [Streptococcus pyogenes]
 gi|254826682|dbj|BAH86623.1| response regulator [Streptococcus pyogenes]
 gi|254826685|dbj|BAH86625.1| response regulator [Streptococcus pyogenes]
 gi|254826688|dbj|BAH86627.1| response regulator [Streptococcus pyogenes]
 gi|254826691|dbj|BAH86629.1| response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|229172695|ref|ZP_04300252.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228610735|gb|EEK68000.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 232

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLP--GIDGF 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 65  QVCKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V + +A T   GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKANTIISGPFSLNVIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|291326185|ref|ZP_06123519.2| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131]
 gi|291315319|gb|EFE55772.1| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131]
          Length = 237

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +                     +         +  +  ++  L   G   +
Sbjct: 11  ILVVEDEPKLGQLLFDYLQAANYQPALIARGDQVIDYVKQHQPALILLDLMLP--GMDGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S VP+I ++        L   + G DD + KP   RE++ARV  I RR + 
Sbjct: 69  SVCRELRKFSDVPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCQP 128

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N      + +  +        ++  L   E R+L+++  N G   ++ Q+ 
Sbjct: 129 NMTTSNSQTNSNNQTKLIIDENAFQVRYGSQLLELTPAEFRLLKFMSDNAGMVFSRDQLL 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +Y      V +  ++SH+  LR+KL +       + S   LGY  D
Sbjct: 189 DILYDDH-RVVTDRTIDSHVKNLRRKLESLDNEKTFIRSIYGLGYRWD 235


>gi|206968529|ref|ZP_03229485.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206737449|gb|EDZ54596.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 225

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +  +      G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLMLYLTPIGYNCVCATSGEEAILHIENRNFKFILLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHSEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|298491318|ref|YP_003721495.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233236|gb|ADI64372.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 236

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A + D    +   +G  ++          L      D+  ++  L   G+  L
Sbjct: 9   ILLVDDEAELTDPLSRVLIREGYIVDAAYHGINGSQLAQIGTYDLLILDWMLP--GKTGL 66

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+ + +R      P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 67  EICQELRRQAKTTPVLFLTAKDTLDDRVQGLDAGADDYLIKPFELRELLARVRALLRRCS 126

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +        + +  + +    QG +  L ++E ++L+Y M   G+ ++ +QI  
Sbjct: 127 IEFYNTTTAHLVVADLELDVENQIAYRQGRIIELSQKESQLLQYFMEYTGQLLSHSQIMQ 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++    +    NV+ + I  LR+K+        + +    GY  
Sbjct: 187 HLWPNGQQPG-SNVIAALIRLLRRKIEAGNESALIRTVYGKGYRF 230


>gi|284929132|ref|YP_003421654.1| winged helix family two component transcriptional regulator
           [cyanobacterium UCYN-A]
 gi|284809591|gb|ADB95296.1| two component transcriptional regulator, winged helix family
           [cyanobacterium UCYN-A]
          Length = 246

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++D         G  +         + L    + D+  ++  L        
Sbjct: 4   ILVIEDDDAIRDLISTNLEMAGYDINQAPDGIKGQALAVQLQPDLIMLDLMLPKV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     + +P++ +S     +  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDERTADIPVLMLSALGQTKDKVEGFNAGADDYLTKPFELAEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +     +   L   E  +L  L+   G+ V+ ++
Sbjct: 122 TDRIPQAAKHSEILNYGPLTLIPERFEAIWFEQTVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILKEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLE 230


>gi|229171432|ref|ZP_04299017.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612136|gb|EEK69373.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 225

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNIPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|220923033|ref|YP_002498335.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219947640|gb|ACL58032.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 223

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ +        DG S +   ++       ++A  D+  ++  L     + +
Sbjct: 3   ILLIEDDLVLGEAVRDHLLSDGHSADWMKTVADAAAAITAAVYDLVLLDLMLPD--GRGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  +  R+   V P+I ++    +   +   ++G DD + KP    E+ AR++A+ RR  
Sbjct: 61  DFLQHRRSLGDVTPVIILTARDQISDRIAGLNAGADDYLIKPFDLFELTARISAVGRRYS 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N     G + +    R     G+  PL  RE  + E L+      ++KTQ+   +Y 
Sbjct: 121 GNPNPLVTIGDLDIDLAARSVHKGGKPVPLTAREWSLFEALIQRPNALLSKTQLEERLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E +I +LRKK+    G D +++ R +GY +
Sbjct: 180 SFDAEVESNTIEVYIGRLRKKI----GADVIETVRGMGYRL 216


>gi|333030003|ref|ZP_08458064.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332740600|gb|EGJ71082.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 242

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 92/221 (41%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D       + G  ++     +    L  +    +   +  L        
Sbjct: 18  ILVVEDEVRVADLIKRGLEEVGYKVDAAYDGQQGLNLFQNNSYHMIISDIILPH--ISGF 75

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL + IR     +P++ ++   +    L+ FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 76  ELCQKIRLIDKNIPILMLTALGTTDDKLEGFDAGADDYMVKPFDFRELDARIKVLLKRGL 135

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +      + +  + ++   +G++  L  +E  +L +++ N  + +++ +I   
Sbjct: 136 EKGSSQPSEISYSDLTINLNTKEASRKGKLIKLSPKEYNLLLFMIKNPERVLSRIEIAEK 195

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           ++         N ++ +I+ LR K+      + + +K  +G
Sbjct: 196 VWDTH-FDTGTNFIDVYINYLRNKIDKPFDTNLIHTKPGMG 235


>gi|297528744|ref|YP_003670019.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297251996|gb|ADI25442.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 223

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   + +  + L    G+  ++     E       +   DV  ++  L       
Sbjct: 3   ILLAEDDLHLGELIVHLLKKKGIDHIDWVQEGEDAYDYAMAEFYDVVVLDWMLPN--GDG 60

Query: 61  LELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R +R +     ++ ++   ++Q  +   ++G DD + KP    E++AR+ A+ RR 
Sbjct: 61  VDICRRLRQNGYTGAILMLTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRT 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +   +       +           E   L  RE ++L+ L+ N+G+ V +  I   +
Sbjct: 121 FVPLQEEKVAFHGFTLNRTSHTLHRGDEEIFLTPREFQLLDLLVQNQGQVVPRETILDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D  V    +++ I  LRKKL++    D + + R +GY ID
Sbjct: 181 WG-WDADVSMKTIDATIKLLRKKLKD----DVIQTVRGVGYKID 219


>gi|289424081|ref|ZP_06425867.1| transcriptional regulatory protein ResD [Peptostreptococcus
           anaerobius 653-L]
 gi|289155506|gb|EFD04185.1| transcriptional regulatory protein ResD [Peptostreptococcus
           anaerobius 653-L]
          Length = 224

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 101/223 (45%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   ++D     F  +  S++  N+  E  +  + +   D+  ++  +       
Sbjct: 6   ILIIDDDLSIQDLLAEFFTANDYSVDCANNGVEGIKLFRDNLGYDLILLDIMMPN--LDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               ++IR  S+VP+I +S   +    L  ++ G DD + KP     ++ +V A+ +R  
Sbjct: 64  YTTCKMIRNTSKVPIIFMSALNAENDQLKGYELGCDDYITKPFSFNLLVKKVEAVLKRTS 123

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++  N      + +  D     + G    L  +E  IL+ L+    + + +  +   I+
Sbjct: 124 ETSPTNSIVFDKMHLDLDTYSISIDGNTVELTLKEFNILKTLIEKYPQIITRESLLDQIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   +  +V++HI  +RKKL+       + + + +GY+++
Sbjct: 184 G-YDYYGDTRIVDAHIKNIRKKLK----IPYIRTVKGIGYTLE 221


>gi|182627315|ref|ZP_02954997.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177907260|gb|EDT70003.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 229

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 104/227 (45%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +    +   +G  + + F+  E +  L+     D+  ++  L G   ++
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFF-DFDMVLLDLMLPGITGEI 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                 IR     P+I IS   +++  ++    G DD ++KP    E+LARV A+ RR K
Sbjct: 66  F--IEEIRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSK 123

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           ++N        +   + +    R+ +V GE   L  +E +ILE L+ N  K   K  +F 
Sbjct: 124 ITNSSEGVETIKYKNLILEPRSREVKVNGEEIQLTSKEFKILELLVCNPKKVFTKANLFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   +   ++N +  HIS LR K+       D + +   +G+ +D
Sbjct: 184 TVW-KEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKMD 229


>gi|159028847|emb|CAO90652.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 230

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 102/230 (44%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       +    ++     E         + D+  ++  L        
Sbjct: 3   ILVVEDDMQLAEILREALSERQYVVDVARDGEEGWNWLELGKYDLLVLDVTLP--KLSGT 60

Query: 62  ELPRIIR---------AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
            L + +R         A++ VP++ ++   ++   +D  D+G DD V KP    E++AR+
Sbjct: 61  LLCQRLRRAESHHPVSANATVPVLLLTARDTVIDKIDGLDAGADDYVTKPFDLGELMARI 120

Query: 113 AAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A+ RR   +++     G +++     +    G++  L  +E  +LE L+ +  + ++++
Sbjct: 121 RALIRRGSSTSSVLLSWGGLQLNPSTHEASYNGQLLSLTPKEFALLELLVTHGRRVLSRS 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            I   ++ L D   EE  V SHI  LR KL++     D +++   LGY +
Sbjct: 181 GIIERVWSLDDSPAEE-TVTSHIRGLRHKLKSLGAPEDFIETVHGLGYRL 229


>gi|170739881|ref|YP_001768536.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194155|gb|ACA16102.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 223

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ +        DG S +   +L       ++A  D+  ++  L     + L
Sbjct: 3   ILLIEDDPVLGEAVRDHLASDGHSADRVATLADAAAAITAAVYDLVLLDLMLPD--GRGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R  R    V P+I ++    +   +   ++G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DFLRQRRTQGDVTPVIILTARDQISDRIAGLNAGADDYLIKPFDLFELTARVGAVGRRYS 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N     G + +    R     G+  PL  RE  + E L+      ++K Q+   +Y 
Sbjct: 121 GNPNPLVTIGDLDIDLAARSVHRAGKPVPLTAREWSLFEALVQRPHALLSKAQLEERLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E ++ +LRKK+    G + +++ R +GY +
Sbjct: 180 AFDAEVESNTIEVYVGRLRKKI----GAEAIETVRGMGYRL 216


>gi|331645097|ref|ZP_08346208.1| transcriptional regulatory protein CreB [Escherichia coli M605]
 gi|330909844|gb|EGH38354.1| two-component response regulator CreB [Escherichia coli AA86]
 gi|331045854|gb|EGI17973.1| transcriptional regulatory protein CreB [Escherichia coli M605]
          Length = 229

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G  +E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFGVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|300921717|ref|ZP_07137883.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|301329917|ref|ZP_07222638.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|300421855|gb|EFK05166.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300844016|gb|EFK71776.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
          Length = 240

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  IMIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GIDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|225570047|ref|ZP_03779072.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
           15053]
 gi|225161517|gb|EEG74136.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
           15053]
          Length = 240

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   +      L   +G  + + FN +E  + L +   + V  I   ++      L
Sbjct: 13  LVVDDDKEIVRSLGKLLELEGYKVLKAFNGMEALDMLVT---DKVHLIILDVMMPELNGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  + +P+I +S        +     G DD V KP +  E++ARV +  RR   
Sbjct: 70  SALMKIREKNNIPVIMLSAKTEESDKVIGLSMGADDYVTKPYNTAELMARVKSQLRRYFA 129

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   SN    TG + +  + +   V GE   L   E +ILE LM + G      QI
Sbjct: 130 LGAAAWADSNAVLRTGGLVLDKNTKQVTVDGEPAQLTATEYKILELLMEHPGYVFPAEQI 189

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +S ++   D    E  V  HI ++R+K+         +     +GY I+
Sbjct: 190 YSRVW-QEDVYAGEKTVMVHIRRIREKIEITPKNPKYLKVVWGIGYKIE 237


>gi|163855906|ref|YP_001630204.1| two-component transcriptional regulator [Bordetella petrii DSM
           12804]
 gi|163259634|emb|CAP41935.1| two-component transcriptional regulator [Bordetella petrii]
          Length = 235

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 13/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++++D A           + G     +++G  +L+      ++   D   ++  L     
Sbjct: 5   LIVEDDADNARYIANGLKELGYDPVITMDGPTALQRA----TTEHWDAIILDRMLP-NDV 59

Query: 59  KVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             L +   +RA   + P++ +S   +L   +    +G DD + KP    E+ ARV A+ R
Sbjct: 60  DGLSILWSLRALGRKTPVLVLSALTALDERVRGLKAGGDDYLTKPFAFPELAARVEALIR 119

Query: 118 R--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R        +     + +          G    L  RE ++L Y+M N G+ + +T + +
Sbjct: 120 RSSSGYERRQLTVADLSLDLVSGQVARGGRAITLQPREYKLLAYMMNNAGQVLTRTMLLA 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +    + NV++ HIS+LR+K+        + + R +GY +
Sbjct: 180 TVWG-YHYDPQTNVIDVHISRLRQKIDGPGEAPLIHTVRGVGYRL 223


>gi|6002654|gb|AAF00081.1|AF095713_1 response regulator CsrR [Streptococcus pyogenes]
          Length = 228

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          DG  +     +   E L+++   +   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQPDGYEV--IVEVNGREGLETALEGEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|70731371|ref|YP_261112.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68345670|gb|AAY93276.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 222

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 98/220 (44%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D  +      G +++         +  +S   D+  ++  L   G   L
Sbjct: 3   LLVVEDHVSLADELLEGLNRQGYAVDWLADGRDALYQGASEPYDLIILDLGLP--GVPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  RA     P++ ++   S    ++   +G DD ++KP H  E+  RV A+ RR  
Sbjct: 61  EVLRKWRADGLATPVLVLTARGSWAERIEGLKAGADDYLSKPFHPEELHLRVQALLRRSH 120

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N+   +   + +    +     G+   L   E R+L Y M +  + ++K+ +   +Y
Sbjct: 121 GQANQQTLQAAGLHLDEGRQCVVRDGQDVLLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +   + NV+E H++ LR+KL    G   ++++R  GY
Sbjct: 181 DG-ETERDSNVLEVHVNHLRRKL----GRSVIETRRGQGY 215


>gi|229114252|ref|ZP_04243673.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669272|gb|EEL24693.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 225

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|331091201|ref|ZP_08340042.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404648|gb|EGG84187.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 226

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G ++  F +   +E L          I   +   G   L
Sbjct: 7   ILIVDDEQSILDMLKLQLEFEGYAV--FTAGNAKETL-DKVSYGPDIILLDINMAGMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   IR     P+I ++   S Q  ++   +G DD + KP    E+LAR++A  RR + 
Sbjct: 64  DLCASIRDFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHLRREQR 123

Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+N+ ++  +    +    R   ++G    L  +E  I++ L AN G+   + +I+  I+
Sbjct: 124 SHNKTKSKFLEELIIDYSDRSLYIKGNKIELSNKEFEIIQLLSANAGQVFDREKIYDCIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G+ D + +  V++ HI K+R K         + +   +GY 
Sbjct: 184 GI-DGSGDSVVIKEHIRKIRLKFSEFTDKTYITTVWGVGYK 223


>gi|307250506|ref|ZP_07532451.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857448|gb|EFM89559.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 201

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 91/194 (46%), Gaps = 6/194 (3%)

Query: 32  LEFEEWLQS----SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQT 86
           LE E++  +    S +  +  ++  L G+ G + ++  +     +Q+P++ ++   S   
Sbjct: 2   LEAEDYQSAVKKLSEKPKLILLDWMLPGRSGIQFIQYLKKSEETAQIPILMLTARSSEDD 61

Query: 87  TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV 146
            +   ++G DD V KP   + ++AR+ ++ RR   +N+      + +  + +    Q + 
Sbjct: 62  CIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDDLILDQNAKRVTFQKKE 121

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L   E ++L + M +  K  ++ Q+   ++G  D  VE+  V+S+I +LRK L     
Sbjct: 122 ISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWGN-DIYVEDRTVDSYIRRLRKSLEPCGF 180

Query: 207 FDPVDSKRFLGYSI 220
              V + R  GY  
Sbjct: 181 ERYVQTVRGSGYRF 194


>gi|226324201|ref|ZP_03799719.1| hypothetical protein COPCOM_01980 [Coprococcus comes ATCC 27758]
 gi|225207750|gb|EEG90104.1| hypothetical protein COPCOM_01980 [Coprococcus comes ATCC 27758]
          Length = 220

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++  +   G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSN-PLKLNMEELHRYDLILLDIMMP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    ++ + +HI  +R K  +   + P+ +   +GY  +
Sbjct: 180 FDSESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWE 219


>gi|254422525|ref|ZP_05036243.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190014|gb|EDX84978.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 245

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G      N     + L      D+  ++  L        
Sbjct: 4   ILVIDDDPAIVELVSINLEMAGYDTTQANDGIKGQALAVQLVPDLIMLDLMLPKV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     + +P++ ++     Q  +D F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDDRTADIPVLMLTALGETQNKVDGFNAGADDYLTKPFELEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +     +   L   E  +L  L+   G+ V+ ++
Sbjct: 122 TDRIPQAAKHSEILSYGPLTLVPERFEAIWLDKTVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 182 ILKEVWG-YDPNDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230


>gi|160935922|ref|ZP_02083296.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441164|gb|EDP18881.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC
           BAA-613]
          Length = 231

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + +  E L+   + +V  +   ++  G   +
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFKV--IKAYDGYEALEYLDKNEVDLLIVDVMMPGLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                +R +S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RTTLKVRENSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQMRRYTQ 121

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +      + G +++  D ++  V G+   L   E  IL  L+ N GK  +  +I
Sbjct: 122 LGNLNQQADGQIYKCGGLQINDDNKEVTVDGDAIKLTPIEYNILLLLVKNAGKVFSIDEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 182 YEQIWNE-EAIGADNTVAVHIRHIREKIEINPREPKYLKVVWGVGYKIE 229


>gi|16132215|ref|NP_418815.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli str. K-12 substr. MG1655]
 gi|89111106|ref|AP_004886.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli str. K-12 substr. W3110]
 gi|170083784|ref|YP_001733104.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli str. K-12 substr. DH10B]
 gi|238903485|ref|YP_002929281.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli BW2952]
 gi|312970092|ref|ZP_07784274.1| transcriptional regulatory protein creB [Escherichia coli 1827-70]
 gi|117433|sp|P08368|CREB_ECOLI RecName: Full=Transcriptional regulatory protein CreB
 gi|147250|gb|AAA24374.1| 28 kd protein [Escherichia coli]
 gi|537238|gb|AAA97294.1| creB [Escherichia coli str. K-12 substr. MG1655]
 gi|1790860|gb|AAC77351.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli str. K-12 substr. MG1655]
 gi|85677137|dbj|BAE78387.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli str. K12 substr. W3110]
 gi|169891619|gb|ACB05326.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli str. K-12 substr. DH10B]
 gi|238860860|gb|ACR62858.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli BW2952]
 gi|260450790|gb|ACX41212.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|310337590|gb|EFQ02701.1| transcriptional regulatory protein creB [Escherichia coli 1827-70]
 gi|315138952|dbj|BAJ46111.1| DNA-binding response regulator CreB [Escherichia coli DH1]
          Length = 229

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|300693555|ref|YP_003749528.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum PSI07]
 gi|299075592|emb|CBJ34885.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum PSI07]
          Length = 231

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 14/231 (6%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +L+DD A +    +     +G + E  +  E       S R  +  ++  +     
Sbjct: 1   MIPVLLVDDDAELTAMLVQYLAHEGFAAEVAHDGEAGVAGALSGRFAIVVLDVMMPR--L 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             ++  R IRA S+VP++ ++        +   + G DD V KP    E++AR+ AI RR
Sbjct: 59  SGIDALRRIRAASRVPVLMLTARGDDIDRISGLNLGADDYVPKPCTPGELVARLRAILRR 118

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                     V+N     GP+ ++   R    Q     L   E  ++E L  + G+ V+K
Sbjct: 119 VPAAGTGDASVANGPIHAGPLALWPSSRRATWQDAPLDLTGTEFSLIEILARHAGRLVSK 178

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             I    +       +   ++ HIS +R+KL  +    P + S R +GY +
Sbjct: 179 EDISQQAFDRPLARFDRR-IDVHISSIRQKLGQRPDGQPWIISVRGMGYQL 228


>gi|326790349|ref|YP_004308170.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541113|gb|ADZ82972.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 234

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +    L   +G  +   FN  E  +++ +++ + +  ++  +       
Sbjct: 6   ILVVDDDLQIMEVLCKLLELEGYKVHSSFNGFEAIDYINNNSIQ-LVILDVMMPH--LNG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L     IR    VP+I +S        +     G DD + KP +  E+LARV A  RR  
Sbjct: 63  LTALLKIREKHNVPIIMLSAKTEETDKVCGLSLGADDYIEKPFNTAELLARVKAQLRRYM 122

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      +++  E G + +    ++  V    + L   E +ILE LM +  +  + 
Sbjct: 123 LLGASIENAAQTHDLIEVGDLVLNQATKEILVCDIPYALTATEYKILELLMKHPNQVFSA 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            QI+  ++     AVE N V  HI ++R+K+  N      +     +GY I+
Sbjct: 183 EQIYENVWQETVYAVE-NTVMVHIRRIREKIEMNPKEPKYLKVVWGIGYKIE 233


>gi|289435683|ref|YP_003465555.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171927|emb|CBH28473.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313632083|gb|EFR99179.1| regulatory protein VanR [Listeria seeligeri FSL N1-067]
 gi|313636469|gb|EFS02215.1| regulatory protein VanR [Listeria seeligeri FSL S4-171]
          Length = 231

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            ++ DD   + D       ++G ++  + + +  E   L    +  +  ++  +      
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTI--YLAYDGAEVWRLVQEKQPTLVILDIMMPE--MN 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R++R+     P++ +S        +    +G DD + KP +  E+  RV AI RR
Sbjct: 61  GLEVCRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++       +S ++   GPI V        V G+   L   E  IL  L++  G+  +  
Sbjct: 121 MQQMSQAEPISQDKVIIGPIVVDRALHVVTVSGKELHLTTSEFDILFLLVSEPGRVFSSE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            IF  I+           V  HIS LR KLR+   G + + +   +GY ++
Sbjct: 181 YIFEKIWQEK-ALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKVE 230


>gi|254520016|ref|ZP_05132072.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913765|gb|EEH98966.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 227

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    D  ++   NS    E L+     D   +   L+       
Sbjct: 4   ILIIEDEESVANVLKAYLEKDKYNVSVCNS--GMEALEVYKEIDFQLVILDLMLPDIDGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR  S V +  ++   SL   +   D G D+ + KP   RE+ ARV A++RR+  
Sbjct: 62  EICKIIRRTSDVYIFMLTSKASLNDRIVGLDIGADEYLIKPFSPRELTARVNALFRRINT 121

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S   ++    G +++  + R  E++GE       E  IL  L+ N+GK +++ Q+   ++
Sbjct: 122 SEKISDIFNDGILKIDYEKRIVELRGEEISFTPSEFDILYTLLINKGKVLSREQLIEIVF 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G+ D    +  ++ HI  +RKK+         + +   +GY  
Sbjct: 182 GI-DFDGYDRTIDVHIKNIRKKIEEDTKNPKYIITVTKVGYKF 223


>gi|215486384|ref|YP_002328815.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312966386|ref|ZP_07780608.1| transcriptional regulatory protein phoP [Escherichia coli 2362-75]
 gi|215264456|emb|CAS08819.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288839|gb|EFR16737.1| transcriptional regulatory protein phoP [Escherichia coli 2362-75]
          Length = 223

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R++   +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQDVITTVRGQGYLFE 221


>gi|170760124|ref|YP_001787315.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|237795352|ref|YP_002862904.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|169407113|gb|ACA55524.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|229262869|gb|ACQ53902.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 233

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 17/231 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEK 59
           +++DD   ++D           S+E  N ++  + L +       ++  I   ++     
Sbjct: 7   LVVDDEKEIRDAIEIYLR----SIENTNIIKAADGLDALDVLENNEIHVIILDIMMPKLD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +     IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR 
Sbjct: 63  GIRTCMKIREKNNIPIIMLSAKNEDTDKILGLNIGADDYVAKPFNPLELVARVNSQLRRY 122

Query: 120 KVSNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
               N              + +        V G+   L   E  IL  L  N G+    +
Sbjct: 123 TNLGNFPKTADVDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVFPSS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           QI+  ++        EN V  HI +LRKK+  +      +     +GY ID
Sbjct: 183 QIYEYVWNEP-SFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKID 232


>gi|16331854|ref|NP_442582.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1208484|dbj|BAA10652.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 241

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D         G  ++        + L    + D+  ++  L        
Sbjct: 4   ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     + +P++ ++    +Q  +  FDSG DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +    G+   L   E  +L  L+   G+ V+ + 
Sbjct: 122 TDRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSD 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G ++   +   +  HI  LR KL  N      + +    GY ++
Sbjct: 182 ILREVWG-YEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLE 230


>gi|163942945|ref|YP_001647829.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865142|gb|ABY46201.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+    + DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEQPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     +++     G + +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKKEVPLNHEVIGAGNLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGASG--EYIKTIYGVGYKLDC 223


>gi|262377611|ref|ZP_06070832.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262307498|gb|EEY88640.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 226

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D       + G   +        +    S   D+  ++  L   G    
Sbjct: 3   ILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLTGKHQALSEEYDLIILDVMLP--GLNGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   IR+    +P++ ++    ++  +   + G DD + KP    E+LAR+  + RR +
Sbjct: 61  NIINDIRSSGKTMPILFLTARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLRRGQ 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +N  +   + +    R     G+   L  +E  ++E  M  RG+ + +  I S I+
Sbjct: 121 QREDSNIIKIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVVEVAIKRLRSKVDSNFTPKLIQNIRGMGYVLEV 223


>gi|260597499|ref|YP_003210070.1| DNA-binding transcriptional regulator PhoP [Cronobacter turicensis
           z3032]
 gi|260216676|emb|CBA30024.1| Virulence transcriptional regulatory protein phoP [Cronobacter
           turicensis z3032]
          Length = 223

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++  +    DV+ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLSELGHQVDAAEDAKEADYYLNEHLPDVAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  RA    +P++ ++     Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRASEITLPILVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVVARMQALLRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P  V    R+  +   +  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISMPPFVVDLSRREVTIHDNLIRLTAFEYTIMETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAEYPGEAITTVRGQGYRFD 221


>gi|239831448|ref|ZP_04679777.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
 gi|239823715|gb|EEQ95283.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
          Length = 235

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D   +           G  ++     E    L  +   D   ++  L    G  V
Sbjct: 9   ILIVEDDKDLNRQLAEAMAAAGYVVDRAYDGEEGHHLGDTEPYDAVVLDIGLPRMDGISV 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +E  R  R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 69  VE--RWRRSGRAMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+ + +      + G    L   E R+L YLM +  + V++T++   +Y 
Sbjct: 127 GHASSELVCGPLYLDTKTSKASINGVALKLTSHEYRLLSYLMHHMDEVVSRTELVEHLYD 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R +GY I
Sbjct: 187 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGMGYRI 222


>gi|319403893|emb|CBI77479.1| two-component response regulator [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 228

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G + +     +       +   DV  I+  L  +    L
Sbjct: 3   ILIIEDDRETGRYLEKAFLEAGHTADIAYDGDTGYTFAETVNYDVMVIDRMLPYR--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +RA   + P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SIVTELRAKGIETPVLILSALGQVDDRVTGLRAGGDDYLTKPFAFSELLARVEVLRRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       +   +   L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGDKNIILQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLHTVRGAGYML 221


>gi|311278928|ref|YP_003941159.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308748123|gb|ADO47875.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 240

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +        +   +  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLLAANYAPTLISHGDKVLPYVHQSPPALILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR + 
Sbjct: 71  TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCRP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                      P+ V         + ++  L   E R+L+ L    GK  ++ Q+ + +Y
Sbjct: 131 HRELQAMDAESPLIVDESRFQASWRNKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL         + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWEAD 235


>gi|218508381|ref|ZP_03506259.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli Brasil 5]
          Length = 228

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 84/218 (38%), Gaps = 9/218 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G++     S             D+  ++  +       L
Sbjct: 5   ILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGNIDLIILDIGMPD--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R IR  S +P++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 63  EVCRQIRKTSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKRSGN 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G I +   GR          +   E  ILE L++  G   ++ Q+  
Sbjct: 123 GAASGRRHAALVAGEISLDRHGRTVMFGDSALAMTALEFAILEALLSRPGMVFSREQLMQ 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
           + YG     V +  ++SHI  +R K     G   + + 
Sbjct: 183 SAYGAGTY-VADRTIDSHIRNIRAKFTAVGGTGIIATV 219


>gi|167033576|ref|YP_001668807.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860064|gb|ABY98471.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 230

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 13/230 (5%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +L+DD   + +        +G      ++ E  E    S    V  ++  L   G 
Sbjct: 1   MIPVLLVDDDRELTEMLSLYLAREGFQATAVDTGEEGEAQALSGNYQVVVLDVMLP--GI 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +E+ R +RA SQVP++ ++        +   + G DD V KP    E++AR+ AI RR
Sbjct: 59  SGIEVLRRVRARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRR 118

Query: 119 LKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++           +  TG ++++   R+         L   E  +LE L    G+ V+K 
Sbjct: 119 VQPQQMGEASAPEQLRTGALKMWPGRREAHWGDATLELTGSEFSLLEALARQAGQLVSKQ 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +     G      +   ++ H+S +R+KL     G   + S R +GY +
Sbjct: 179 DLSLNALGRPLTRYDRR-IDVHVSSIRQKLGPRADGSSWIQSVRGMGYML 227


>gi|121606845|ref|YP_984174.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595814|gb|ABM39253.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 224

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 109/223 (48%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG +      G + +   S  E +  L ++   D+  ++  L       
Sbjct: 3   ILIAEDDQVLADGLLRTLRASGAAADHVASGTEADAALLTNTEFDLLILDLGLPR--MHG 60

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +RA  S +P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  LEVLKRLRARGSTLPVLILTAADSVEERVKGLDYGADDYMAKPFSLQELEARVRALVRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +   ++  + GP+     GR   + G +  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGGGSSTIKHGPLVYDQAGRVATIDGHMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 -EWGEEVSNNAIEVYIHRLRKKIEK--GPVRIATVRGLGYCLE 220


>gi|296111541|ref|YP_003621923.1| two-component system regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295833073|gb|ADG40954.1| two-component system regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D  I  F  D   +   ++    E+    +  D+   +  L   GE   
Sbjct: 7   ILLIEDDVNLADN-IVGFLQDFADVNVVDNGLDGEFEGQESPYDLIISDLMLP--GENGF 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R +  + P++ ++   SL   ++ F+ G DD + KP +  E+L RV A+ RR  
Sbjct: 64  EVIKYLRKNDIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRAG 123

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V   +N    G + +  + R  +V G+   L  +E  IL YL  N+   V + QIF  ++
Sbjct: 124 VYSEDNMIAVGDVMINLENRGVQVHGQQVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G+ D     NVV  +++ LR+KL      D + + R +G+ ++ N
Sbjct: 184 GI-DSDTTINVVNIYLNNLRRKLEAVGQNDLIKTLRNIGFILEVN 227


>gi|254432170|ref|ZP_05045873.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197626623|gb|EDY39182.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 240

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 16/227 (7%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD A V+   +      G  +      E    L    + D+  ++  L         + R
Sbjct: 2   DDEAAVRRVLLMRLQLAGYRVICAEDGEEALTLFHQEQPDLVVLDVMLP--KLDGFAVCR 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            +RA S VP+I +S   ++   +   D G DD + KP   +E+ AR+A I RR+   +  
Sbjct: 60  RLRAESCVPIIFLSALDAIAERVSGLDLGADDYLPKPFSPKELEARIATILRRVGRGSAS 119

Query: 126 AE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           AE             G + V ++ R     GE   L   E  +LE L    G+ V + +I
Sbjct: 120 AEPREQPSGTGVLRLGDLVVDTNRRQVTRDGERIALTYTEFSLLELLFREPGRVVPRAEI 179

Query: 174 FSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
              ++G     A +  VV+ ++++LR KL  +    + + + R  GY
Sbjct: 180 LEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 226


>gi|110801717|ref|YP_699624.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682218|gb|ABG85588.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 232

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        +G+++    S +  E L+   +ED+  +   ++      + 
Sbjct: 9   LVVDDEKEIRDAIDIYLRGEGINV--IKSGDGFEALEILDKEDIHLVVLDIMMPKLDGMR 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR    +P+I +S        +   + G DD V KP +H E++ARV +  RR    
Sbjct: 67  TCLKIRESRNIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRRYDYP 126

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + + +      + + +  +   ++GE   L   E +IL  L ++ G+  +  +I+  
Sbjct: 127 LNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKEIYER 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++        EN V  HI ++R+K+  N    + +     LGY ID
Sbjct: 187 VWEEP-FYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGYKID 231


>gi|126651878|ref|ZP_01724079.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591346|gb|EAZ85454.1| two-component response regulator [Bacillus sp. B14905]
          Length = 256

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 103/232 (44%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD + + D    +   +G   ++  ++ +      +    D+  ++  L  +    
Sbjct: 21  ILLVDDESAILDMLQMVLTKEGFRQIDRASTAQEALNACNKKPYDMILLDVMLPDR--SG 78

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++   IR  ++ P++ I+   S    L  F  G DD + KP +  EI+AR+ A  RR+K
Sbjct: 79  FDICPFIRETTEAPILFITAKNSDLEKLTGFAMGGDDYITKPFNPLEIVARMKAQLRRVK 138

Query: 121 VSNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +                + G  +V     +  V G+V   P +  ++L +   +  +   
Sbjct: 139 LYEEERPLHLSSNMFIYDFGRFQVNERAGELMVDGQVISCPAQVYQLLLFFCKHPNQIFT 198

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           K+Q++ A++G      ++N V  HI ++R+++  +    + + + R LGY +
Sbjct: 199 KSQLYEAVWGDH-SFGDDNTVTVHIGRIRERIEKDPKDPELLLTIRGLGYKL 249


>gi|331083633|ref|ZP_08332744.1| hypothetical protein HMPREF0992_01668 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403844|gb|EGG83396.1| hypothetical protein HMPREF0992_01668 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 227

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G +     S    + L       +  ++  L   G    
Sbjct: 7   ILIVEDDTDINNLLFTALKKQGYTATQAFSGTEAKMLLKMENFALILLDLMLP--GISGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+   I+      +I ++   +L   ++   +G DD + KP   +E+LARV    RR   
Sbjct: 65  EVLEFIKEQGNSAVIILTAKDTLDDKVNLLIAGADDYITKPFEIQEVLARVQVQLRRSVQ 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + ++N      + +  +    +V+G++   + ++E  ILE L+ +  +  +K  IF   +
Sbjct: 125 EGNSNVLSHKQMVLDREKFQIKVEGQLMGKITKQEFSILELLLKHPKQVFSKEDIFEYAW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 185 EEP-YMGETKTLDVHISNIRKKIKEVTKEEYIETVWGIGYRL 225


>gi|251799424|ref|YP_003014155.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547050|gb|ACT04069.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 225

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   ++     +   +G  +  + + +  E ++   R  ++     ++       
Sbjct: 4   LLLADDDPNIRALVRFVMTREGYQV--YEAQDGAEAVEVMQRAPINLAIIDVMMPRIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           EL   IR    +P+I ++    L      +  G DD V KP    E+L RV A++RR  +
Sbjct: 62  ELCEYIRERYDIPIIMLTAKDQLSDKEQGYLRGTDDYVTKPFEPEELLFRVKALFRRYNQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS++      I +     +      V  LP +E  +L  L    G+  ++ ++   ++  
Sbjct: 122 VSHDLIRMNRITIDRKNVEVTDGQSVLLLPMKEFELLAQLAQYPGRLFSREELIRLVW-A 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D   ++  V+ HI +LR++  +      + + R +GY ++ 
Sbjct: 181 ADFEGDDRTVDVHIKRLRQRFADYAEDFTIQTVRGIGYKVEV 222


>gi|59713362|ref|YP_206137.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Vibrio fischeri ES114]
 gi|197337719|ref|YP_002157770.1| transcriptional activator protein IrlR [Vibrio fischeri MJ11]
 gi|59481610|gb|AAW87249.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Vibrio fischeri ES114]
 gi|197314971|gb|ACH64420.1| transcriptional activator protein IrlR [Vibrio fischeri MJ11]
          Length = 226

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +       + G +++         +  ++ + D+  ++  L        
Sbjct: 3   LLIIEDETKTGEYLKKGLTESGYTVDLSQDGADGLYNATTNQYDLIILDVMLP--KLNGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           ++ + +R   +  P+I ++    +   +  F+ G +D + KP    E+ ARV    R   
Sbjct: 61  QILQTLRNCENDTPIIMLTAKDQIDDRVKGFELGANDYLIKPFAFAELKARVENALRAKS 120

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + S+N      +++    R      +   L  +E  +LE  M  +G+ +++T I S 
Sbjct: 121 VISQPSSNELVLHDLKLDLLKRTATRNQDNITLTAKEFSLLELFMRKQGEVLSRTTIASL 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+ + +   + NV++  + +LR K+        + + R +GY +D
Sbjct: 181 IWDM-NFDSDTNVIDVAVKRLRSKIDKPYDTPLIHTVRGMGYKMD 224


>gi|300723580|ref|YP_003712885.1| response regulator in two-component regulatory system with BaeS
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630102|emb|CBJ90739.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Xenorhabdus nematophila ATCC 19061]
          Length = 235

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +                +         + D+  ++  L   G   L 
Sbjct: 11  LIVEDEPKLGRLLVDYLQSADYQTAWLKRGDEVIDHVQKYQPDIILLDLMLP--GLDGLS 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           + R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR  + 
Sbjct: 69  VCREIRKFSDIPIVMMTAKTEEIDRLLGLEIGADDYICKPYSPREMVARVKTILRRCYRP 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +  +E G + +  +         V  L   E R+L+ + +  G+  ++ Q+ + +Y   
Sbjct: 129 QDIISEQGALSIDENHFQARYLERVLELTPIEFRLLKIMSSQPGRVFSRDQLLNNLYNDH 188

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
              V +  ++SHI  LR+KL         + S   LGY  +
Sbjct: 189 -RIVNDRTIDSHIKNLRRKLEQLDEDKSFIRSIYGLGYRWE 228


>gi|294815494|ref|ZP_06774137.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328093|gb|EFG09736.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 307

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 92/232 (39%), Gaps = 19/232 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE------DVSAIEAFLIG 55
            +L++D   V     A+ G  G  +    + E        A         V  ++  L  
Sbjct: 77  LLLVEDDDHVAAALSAVLGRHGFQVVHARNGEEALRAVLPAAHPGRPPFGVILLDLGLPD 136

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           +     ++   +R  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+
Sbjct: 137 Q--DGYQVCGKLRKITSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAV 194

Query: 116 YRRLKVSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            RR    ++           GP+ +    R   V G    L R+E  +L  L    G   
Sbjct: 195 SRRGGPGDDAPAPAGQALRLGPMTIELSTRRVSVDGTEVQLTRKEFDLLALLAQRPGVVF 254

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + QI S ++    E      +E H++ LR KLR       V++ R +GY +
Sbjct: 255 RREQIISEVWRTSWEGTG-RTLEVHVASLRAKLRMPA---LVETVRGVGYRL 302


>gi|330993828|ref|ZP_08317760.1| Transcriptional regulatory protein pcoR [Gluconacetobacter sp.
           SXCC-1]
 gi|329759096|gb|EGG75608.1| Transcriptional regulatory protein pcoR [Gluconacetobacter sp.
           SXCC-1]
          Length = 245

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D + +    I         ++   S      +  +A  DV  ++  L    G  +
Sbjct: 25  ILLVEDDSKIAQEVIEELESRHYHVQHEVSGAAGLAMGLNAHFDVMIVDRMLPELDGLSL 84

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  R  R H  VP++ +S   ++   +    +G DD + KP    E+ AR+ A+ RR  
Sbjct: 85  IETLRERRVH--VPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARLEALLRRPD 142

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S +     GP+ +    R    +G    L  RE R+LEYLM    + + +  +   ++ 
Sbjct: 143 NSRHTMLRAGPLEMDLIERTVMREGVPIELLPREFRLLEYLMRRPNQVLTRNMLLEDVWN 202

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + N+V+ HI KLR+K+        + S R  G+ +
Sbjct: 203 -YRFIPQTNLVDVHIGKLRRKIDESGRPPLIQSIRGAGFML 242


>gi|18311346|ref|NP_563280.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|110799262|ref|YP_697054.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168205193|ref|ZP_02631198.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168210332|ref|ZP_02635957.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213275|ref|ZP_02638900.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168216671|ref|ZP_02642296.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169347122|ref|ZP_02866064.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182625790|ref|ZP_02953557.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|18146030|dbj|BAB82070.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110673909|gb|ABG82896.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169296805|gb|EDS78934.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170663236|gb|EDT15919.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170711566|gb|EDT23748.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170715215|gb|EDT27397.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177908946|gb|EDT71433.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182381197|gb|EDT78676.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 232

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        +G+++    + +  E L+   +ED+  +   ++      + 
Sbjct: 9   LVVDDEKEIRDAIDIYLRGEGINV--IKAGDGFEALEILDKEDIHLVVLDIMMPKLDGMR 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR    +P+I +S        +   + G DD V KP +H E++ARV +  RR    
Sbjct: 67  TCLKIRESRNIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRRYDYP 126

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + + +      + + +  +   ++GE   L   E +IL  L ++ G+  +  +I+  
Sbjct: 127 LNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKEIYER 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++        EN V  HI ++R+K+  N    + +     LGY ID
Sbjct: 187 VWEEP-FYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGYKID 231


>gi|332827589|gb|EGK00335.1| hypothetical protein HMPREF9455_03474 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 227

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +  +    + G S+    +      L S     +  ++  L       +
Sbjct: 3   ILLIEDNHRISEFVVKGLEETGYSVVLAENGVDARSLISEKEWSLILLDIMLPD--IDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL +  R      P++ IS     +  +   D G DD + KP   RE++A + A+ RR  
Sbjct: 61  ELLQYTRYKKINTPILVISALGDAEDKIRALDCGADDYLTKPFLLRELIAHINALTRRAG 120

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V+++  E   +++F D    E  GE   L  +E ++L+ LM N+ K +++ Q+   
Sbjct: 121 LKYDVASDVLECDDLKLFKDRHRVERGGEEIKLTMQEFKLLKLLMENKDKVLSRAQLLDT 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G+ +     NVV+ +IS LR K+        + + +  GY I+
Sbjct: 181 VWGV-NYDTNTNVVDVYISYLRNKIDTDGHVKLIKTVKGRGYMIE 224


>gi|294055631|ref|YP_003549289.1| two component transcriptional regulator, winged helix family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614964|gb|ADE55119.1| two component transcriptional regulator, winged helix family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 233

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +        +G   E  N            + D+  ++  +       L
Sbjct: 9   ILVVDDEPDVTELLKYKLEQEGYQCEVLNDPLAFVGRARDYQPDLMILDIMMPE--LNGL 66

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L RI R   A   VP++ ++     +  +   + G DD V+KP + +E++ RV  +  R
Sbjct: 67  QLCRIARSDPAIKDVPIVFLTARGEAEDRIKGLEIGADDYVSKPFNTKELMLRVGKVLNR 126

Query: 119 LK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +  R + G + +  +     V  E   L   E R+L+ LM  +G+  ++  +
Sbjct: 127 GTQREAIAAPARIQIGGVVIDEELHQLTVDDEPVVLTATEFRLLKLLMERKGRVQSRENL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
              ++  +D  +E   V++H+ ++R+KL        +++ R +GY 
Sbjct: 187 LVNVW-HYDTDIETRTVDTHVRRVREKLGRYSH--LIETVRGVGYR 229


>gi|300769838|ref|ZP_07079718.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763289|gb|EFK60105.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 234

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 98/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V +  I    +DG  +           +  +   D+  ++  L       L
Sbjct: 4   ILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAVDLVILDILLPQ--MNGL 61

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           ++ + IR   ++ +P++ ++   S +  +   D+G DD ++KP    E+ AR+  + RR 
Sbjct: 62  DVCKAIRDSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLLRRK 121

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    ++ N       +++    +      E   L   E R+L+  M +  K   +
Sbjct: 122 SEISKSVQSQMKNEVYRYSVLKLDDYQKVAYCNDEELNLTSTEYRLLQLFMRSPKKVFMR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++   ++G+ +  +  NVV+ +++ LR+K+        + +   +GY +
Sbjct: 182 SELLDEVWGI-NFDIGSNVVDVYVNYLRRKIEKHSPMKLIHTVIGMGYVL 230


>gi|167839126|ref|ZP_02465903.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 220

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G       +G +++   + +       +    +  ++  L  K    L 
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDK--DGLA 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +   +R     +P+I ++   +L   +   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLIKPFALEELLARIRAVNRRQAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G +R+           E   L  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 122 RAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDTILTVRGVGYRI 216


>gi|313888528|ref|ZP_07822195.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845557|gb|EFR32951.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 223

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    +++  + +     ED   I   ++       
Sbjct: 4   ILVVDDEKSIREVIRTYAEFEGHEV--VEAVDGLDAIDKVKEEDFDVIVMDIMMPRLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + I+    +P++ +S        L  F+ G+DD V KP   +E++AR+  I  R   
Sbjct: 62  SSYKEIKKIKNIPVLMLSARSEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNNK 121

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N   E   +++  DGR   V  E+  L  +E  +L Y++ N+   +++ ++ + ++G
Sbjct: 122 VEENKTMEFEGLKIDLDGRVVFVDDEMIDLTPKEYDLLVYMVKNKNIALSRDKLLNQVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E+  V++HI  LR  ++       + + R +GY  D
Sbjct: 182 -YDFYGEDRTVDTHIKMLRNSIKEY--RKFIITVRGVGYKFD 220


>gi|169349478|ref|ZP_02866416.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552]
 gi|169293553|gb|EDS75686.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552]
          Length = 227

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +++        +G  +  F++      L       ++  +  L       +
Sbjct: 5   IFVIEDDENIREIINLALVSNGYEVVQFDNAIDALELMKKETPSLAIFDLMLP--KMSGI 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  + IR  +  +P++ +S        ++  DSG DD + KP    E+ ARV ++ RR  
Sbjct: 63  DAIKKIRETNNELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRR-H 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+++  +T  + V    R  ++ G+   L  +E ++L YLM N+ + V + ++ + I+G 
Sbjct: 122 VTSDVIKTKHLVVDKQTRMIKMDGKKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   E   ++ HI  LR KL +  G   + + R +GY  
Sbjct: 181 YDFIGESRALDVHIRALRSKLNDD-GHKYIKTIRSVGYRF 219


>gi|126642907|ref|YP_001085891.1| OmpR family transcriptional regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 199

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 7/184 (3%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
           + ++  ++  +       L + R +R  S +P+I ++        +   + G DD V KP
Sbjct: 16  KPNLMILDLMVPR--MDGLTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKP 73

Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
              +E++ARV A+ RRL+      +    R+    +    Q +   L   E R+LE  + 
Sbjct: 74  FSPKELVARVQAVLRRLERKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLE 133

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGY 218
           + G+  ++ Q+   I       V + V++SHI  LR+K+          + + +   +GY
Sbjct: 134 HVGQVYSRAQLLDHI-NPDSFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGY 192

Query: 219 SIDW 222
             ++
Sbjct: 193 RFEY 196


>gi|70731211|ref|YP_260952.1| DNA-binding response regulator QseB [Pseudomonas fluorescens Pf-5]
 gi|68345510|gb|AAY93116.1| DNA-binding response regulator QseB, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 220

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G +L+     +    L +   E    +   L       L
Sbjct: 3   LLLVEDDRALGQGIRVALSAEGYTLDWLQ--DGASALHALRTESFDLLLLDLGLPRLDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +RA    +P++ ++        +   D+G DD + KP    E  ARV A+ RR +
Sbjct: 61  ELLQQLRAAQQDLPVLILTARDGTAERIAGLDAGADDYLVKPFDVEEFKARVRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   IR+    +  + Q     L   E ++L  LM   GK V + ++  A+YG
Sbjct: 121 GRAQPLLEHAGIRLDPANQQVQYQDNEVVLTPMEYQLLHQLMVRPGKVVTRERLSRALYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  VE N +E  I  LRKKL      + + + R +GY +
Sbjct: 181 WQDR-VESNTLEVLIHNLRKKL----CSELIRTVRGVGYVL 216


>gi|186687169|ref|YP_001870312.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186469472|gb|ACC85271.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 228

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +              ++   + +E  E+ Q+    D+  ++  L       
Sbjct: 3   ILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQA-GNYDLILLDLMLPR--LDG 59

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L + +RA +    ++ ++   +    +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 60  ITLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRS 119

Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + +       G +++           +   L  +E  ILE  + N  + + ++ I   ++
Sbjct: 120 QETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             FD+   E  V++HI+ LRKKLR      D +++   +GY +
Sbjct: 180 -EFDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRL 221


>gi|119503823|ref|ZP_01625905.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
 gi|119460331|gb|EAW41424.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
          Length = 234

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        +G  +      +   WL +    D+  ++  L   G   +
Sbjct: 4   ILVVDDEPDLRDMLRFALETEGFEVLEAADTQKAYWLITDQDPDLVLLDWMLP--GGSGI 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL   ++   A   +P+I ++     +  +   D G  D + KP   +E+LAR+  I+R 
Sbjct: 62  ELLSRLKKEEATQSLPVIMVTAKAREEDIIQGLDMGAHDYITKPFSLKELLARIRTIFRH 121

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    N++   G + +  D R   +  +V  L   E ++L++ M +  +  A+ QI   
Sbjct: 122 TEDDDVNHQLRVGDLVLELDNRRVTLGSQVLMLGPTEFKLLQFFMLHPERAHARKQILQH 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220
           I+G  +  V+   V+  I +LRK L++      + + + R  GY  
Sbjct: 182 IWGN-NACVDARTVDVSIRRLRKTLQSAHPVYSELIQTVRGTGYRF 226


>gi|238925292|ref|YP_002938809.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Eubacterium rectale ATCC 33656]
 gi|238876968|gb|ACR76675.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Eubacterium rectale ATCC 33656]
          Length = 226

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       +    +  F + +           D+  ++  L    E  
Sbjct: 7   LIYIVEDDESIREIESIALKNSNYIVSAFENAKEFYKKLDELVPDLILLDVMLPD--ESG 64

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            ++ R +R       +P+I ++   +    +  FD G DD + KP    E++ RV A+ R
Sbjct: 65  YDIVRKLRKRPATQDIPIIMVTAKTTEMDMIKGFDGGADDYIKKPFSIMELITRVKALLR 124

Query: 118 RLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R      +  +   + +  +     V  E   L  +E  +L  LM ++G  + +  I  +
Sbjct: 125 RTAKEEPKLLKLDDLVIDHERHVVTVNNEPVDLTYKEYELLRLLMGSQGIVMTREVIMRS 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   D   E   V+ HI  LR KL +      + + R +GY I+
Sbjct: 185 VWDT-DFEGETRTVDMHIKTLRHKLGDYGS--RIKTVRNVGYVIE 226


>gi|157158031|ref|YP_001464487.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           E24377A]
 gi|157080061|gb|ABV19769.1| transcriptional regulatory protein QseB [Escherichia coli E24377A]
          Length = 215

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 13/221 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG        G S++ F      +    SA  D   ++  L   G    
Sbjct: 3   ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGR 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  R   Q  P++ ++   +L+  ++    G DD + KP     +     A+ RR  
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIGL----EALMRRTN 116

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y 
Sbjct: 117 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 175

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE V  N VE H+  LR+KL    G D + +   +GY++
Sbjct: 176 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 212


>gi|126439551|ref|YP_001057860.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126219044|gb|ABN82550.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
          Length = 247

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLP--KMSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       +  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 219


>gi|292670361|ref|ZP_06603787.1| response regulator [Selenomonas noxia ATCC 43541]
 gi|292647953|gb|EFF65925.1| response regulator [Selenomonas noxia ATCC 43541]
          Length = 235

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 84/228 (36%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G +++  +  +  +    +    +  ++  L   G    
Sbjct: 4   ILLVEDDNDIAQLERDYLEASGFAVDISSDGDEGQRRALTGEYSLILLDVMLP--GADGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + R +R    +P++ +S        +     G DD + KP    E+ ARV A   R   
Sbjct: 62  AICRAVRRELDIPILMVSARLEDVDKIRALGLGADDYIVKPFSPSELAARVKAHITRYER 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + + +    G + +        V G    L  RE  +L +L  +     +K  ++
Sbjct: 122 LKGGEQTAPSVLRFGSLEIQPQTHRVFVNGHEVRLAVREFELLLFLAEHPQIVFSKETLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++ L D     + V  H+++LR+K+  +      + +    GY  +
Sbjct: 182 DRVWDL-DAMGSVSTVSVHMNRLREKIEPDPSNPRWLQTVWGAGYRFN 228


>gi|170758675|ref|YP_001786359.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405664|gb|ACA54075.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 240

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++IDD   +      +   +G     + +   E+  +   +   D+  ++  L     +
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQ-NIYYATNLEDGFKEFNKVEPDIIILDIMLPD--GE 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             EL + IRA S+VP++ +S        +  F  G DD + KP   +E+  RV A  RR 
Sbjct: 68  GYELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRY 127

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     N    GP  +     + + +G +  L  +E  ++ +   +  + ++K +I
Sbjct: 128 SYVENANEEKNILSFGPFELNISKGEFKKEGSLIELKPKELALIAFFAKHPNQIISKEKI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G  D    +N +  HI +LR+K+  +    + + + + LGY +
Sbjct: 188 CDNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234


>gi|218232340|ref|YP_002366694.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229178405|ref|ZP_04305773.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|218160297|gb|ACK60289.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228605043|gb|EEK62496.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|326939716|gb|AEA15612.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 229

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 4   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLP--GIDGL 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  + ++ +I ++     +  +     G DD + KP     + AR+ ++ RR++
Sbjct: 62  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 121

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|148241662|ref|YP_001226819.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849972|emb|CAK27466.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 240

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + +        +G +++  N        L+     D+  ++  L       
Sbjct: 10  LLLVDDEPKLTEFLRMELEVEGYAVQIANDGASGLIALRGEPAPDLVLLDWNLPDF--TG 67

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R IR+    VP++ ++ Y  ++  ++  D+GVDD + KP    E+LAR+ A+ RR 
Sbjct: 68  LDICRRIRSTGMSVPVLMLTGYDEVKDKVEALDAGVDDYLVKPFSIEELLARLRALQRRS 127

Query: 120 KV------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +    G + +     D         L  +E ++L +LM +  K  ++ +I
Sbjct: 128 NALQPQASEPDVLRIGDLELNQANHDVRRGSRSIQLSNKEYQLLVFLMRSPNKVQSRLEI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G      ++N+++ +I  LR+K+ +      + + R +G+ +
Sbjct: 188 LHGVWGES-FYGDDNLLDVYIRYLRQKVESPDEPKLIHTVRGVGFMM 233


>gi|119473456|ref|ZP_01614965.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium
           TW-7]
 gi|119444467|gb|EAW25798.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium
           TW-7]
          Length = 229

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  ++  +  E    L  +    +  ++  L        
Sbjct: 3   LLMIDDDTGLCELLSEYLSSQGFEIQSVHDGEQGLKLAQANDYALILLDVMLPT--IDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R     P+I ++        +   + G DD + KP +HRE+LARV AI RR++ 
Sbjct: 61  EVLKQLRQTKLTPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIEH 120

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N       N+     + +    R+  +      L   E  IL  L  N  + V+K QI 
Sbjct: 121 INSLNINTTNKLLVNGVTINLAAREASIDENTLTLTGTEYEILALLCKNASQVVSKEQIS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + G    + +   ++ H+S +RKK+   +  + + + R  GY  
Sbjct: 181 EEVLGRRLASFD-RSIDMHVSNIRKKIAEHIKTERIKTMRGSGYVF 225


>gi|317490823|ref|ZP_07949259.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920370|gb|EFV41693.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 233

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D + + D  I     +G ++  F        + +  + D+  ++  L        
Sbjct: 5   IWLVEDESSIADTLIYTLESEGFTVCWFERGLPVLEMMTEKKPDLVILDVGLPD--INGF 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL R I   S  +P++ ++        L   + G DD V KP   RE+ ARV  I RR  
Sbjct: 63  ELCRKILTQSPDLPVLFLTARNDEVDRLIGLEIGADDYVAKPFSPREVCARVRTILRRSL 122

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L   ++    GP  +           +   L R E  +L+ L+   G+  ++ Q+
Sbjct: 123 KQNRLLNTPSSAVSIGPFMLDEACASISYHQQPLTLTRYEFLLLKTLLLAPGRVFSREQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++   +E++E   V++HI  LR KLR      + + + R LGYS+
Sbjct: 183 MDIVWTHAEESLE-RTVDTHIKTLRAKLRAVNSEGNAIQTHRGLGYSL 229


>gi|190150575|ref|YP_001969100.1| phosphate regulon transcriptional regulator PhoB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307263920|ref|ZP_07545524.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|189915706|gb|ACE61958.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306870785|gb|EFN02525.1| Phosphate regulon transcriptional regulatory protein phoB
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 213

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 29  FNSLEFEEWLQS----SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPS 83
           +  LE E++  +    S +  +  ++  L G+ G + ++  +     +Q+P++ ++   S
Sbjct: 11  YQVLEAEDYQSAVKKLSEKPKLILLDWMLPGRSGIQFIQYLKKSEETAQIPILMLTARSS 70

Query: 84  LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ 143
               +   ++G DD V KP   + ++AR+ ++ RR   +N+      + +  + +    Q
Sbjct: 71  EDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDDLILVQNAKRITFQ 130

Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203
            +   L   E ++L + M +  K  ++ Q+   ++G  D  VE+  V+S+I +LRK L  
Sbjct: 131 KKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWGN-DIYVEDRTVDSYIRRLRKSLEP 189

Query: 204 KLGFDPVDSKRFLGYSI 220
                 V + R  GY  
Sbjct: 190 CGFERYVQTVRGSGYRF 206


>gi|148241212|ref|YP_001226369.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849522|emb|CAK27016.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 257

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+          G  +      E    L +S + D+  ++  +        
Sbjct: 15  LLVVDDEPAVRRVLSMRLQLSGYRVVCAEDGEQALELFASEQPDLVVLDVMMP--KLDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP++ +S   ++   +   D G DD ++KP   +E+ AR++ I  R+  
Sbjct: 73  AVCRRLRAESAVPIVFLSSLDAIAEKVAGLDLGADDYLSKPFSPKELEARISRILGRVVG 132

Query: 122 SN-------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                               G + V ++ R     GE   L   E  +LE L    G+ V
Sbjct: 133 RGTASQDPREPVAGLGVLRLGDLVVDTNRRQVSRGGERISLTYTEFSLLELLFREPGRVV 192

Query: 169 AKTQIFSAIYGLFD-EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            + +I   ++G       +  VV+ ++++LR KL  +    + + + R  GY
Sbjct: 193 PRAEILEQLWGYPPRRTADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 244


>gi|332295042|ref|YP_004436965.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332178145|gb|AEE13834.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 224

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 103/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   + +        +G  + + F++ +  +     A+  +  ++  L       
Sbjct: 5   ILLVEDDIDISNNIKTFLSLNGFEVIQAFSASDAFDVF-DEAKVSLIILDLMLPD--MFG 61

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ +++RA   ++P++ +S        +   D G DD + KP   +E+LAR+ ++ RR 
Sbjct: 62  SEILKVLRARGLEIPILVLSALTEEHNKVSLLDLGADDYLTKPFGMKELLARIRSLIRRK 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E GP RV  +      QG +  L   E ++L +L  N G+  ++ ++   ++G
Sbjct: 122 NGFGLVVEKGPFRVDKEKSQIYFQGNLMNLTATEYKLLLFLFENNGRTYSREKLIDKVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
             +  VE  +V+ +I +LR+K+        +  ++R  GY ++
Sbjct: 182 E-EYFVEARMVDVYIRRLREKIETDPSNPQILKTRRGFGYVLE 223


>gi|290958605|ref|YP_003489787.1| two component system reponse regulator [Streptomyces scabiei 87.22]
 gi|260648131|emb|CBG71239.1| putative two component system reponse regulator [Streptomyces
           scabiei 87.22]
          Length = 242

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V +         G  +E  N+      L      DV  ++  L       L+
Sbjct: 4   LLVEDDEPVAESLRRGLLRYGFEVEWVNTGGAA--LSYGGPYDVVLLDLGLPDT--DGLD 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  SQVP+I IS        +   + G DD V+KP   RE++AR+ A+ RR++  
Sbjct: 60  VCKALRDRSQVPIIVISARSDETDRVVGLELGADDYVSKPFGVREVIARIRAVMRRVQPR 119

Query: 123 NNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              A  GP      + V        + G    L  +E  +L +L    G  +++ QI  A
Sbjct: 120 AADAPAGPDRYGPRLTVDRKAARVHLDGTEVGLAPKEYDLLAFLTEEPGALMSREQIMEA 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   +       ++ H++ LR+KL   +    +++ R +G+ +  N
Sbjct: 180 VWDA-NWFGPTKTLDVHVAALRRKLAGAI---TIEAVRGVGFRLIVN 222


>gi|253996694|ref|YP_003048758.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983373|gb|ACT48231.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 235

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +          +G  +   +       L  S + D++ ++  +       +
Sbjct: 4   ILLIDDDIELTAMLKEFLCTEGFDVTTASDGVSGAQLALSNQFDLAVLDVMMP--KMNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E   +IR  SQ+P+I ++            + G DD V KP   RE+ AR+ AI RR K 
Sbjct: 62  ETLGLIRKSSQIPVIMLTARGDESDRFFGLELGADDYVPKPCTPRELTARIRAILRRAKP 121

Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +    +T      G + ++ + R  E+ G    L   E  +LE L  N G  V+K ++  
Sbjct: 122 TQESLQTESQLTVGDLTIWPEQRRVELDGNTINLTSTEFNLLEVLAKNAGHVVSKKELAK 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              G    A  +  ++ H+S +R+K+   K G D + +   +GY +
Sbjct: 182 LGMGKP-LARFDRSIDVHMSSIRQKIGTLKDGRDCIQTVYRMGYQL 226


>gi|229104138|ref|ZP_04234811.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228679273|gb|EEL33477.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
          Length = 214

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++            +   +  +  E ++   ++    I   ++       E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVAS--DGLEGMKQFNKQSFDLILLDVMMPNLNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   + +
Sbjct: 60  KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N      + V  D     V     PL  +E  IL+ L+ N  K + +  I   I+G ++
Sbjct: 120 DNHFVFRELHVDGDAYKVYVNRVDVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A +  ++++H+  +RKKL        + + + +GY ID
Sbjct: 179 YAGDTRMIDTHMKNIRKKLD----IPYIKTVKGIGYKID 213


>gi|227892817|ref|ZP_04010622.1| two-component system regulator [Lactobacillus ultunensis DSM 16047]
 gi|227865458|gb|EEJ72879.1| two-component system regulator [Lactobacillus ultunensis DSM 16047]
          Length = 238

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       N+             D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALEQNFDAILLDLMLPD--LNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+K+
Sbjct: 62  EIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAK 170
                          +   + + +  R      G+   L +RE  +L  L+ N+   V++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+ + I+G  +  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 182 DQLLNKIWGP-ESNIETNVVEVYVRYLRNKIDVPGQPSYIKTVRGTGYMV 230


>gi|134279950|ref|ZP_01766662.1| Transcriptional regulatory protein tctD [Burkholderia pseudomallei
           305]
 gi|134249150|gb|EBA49232.1| Transcriptional regulatory protein tctD [Burkholderia pseudomallei
           305]
          Length = 273

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 29  ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPR--MSGL 86

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+   +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 87  EVLSRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 147 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 207 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 245


>gi|91790516|ref|YP_551468.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91699741|gb|ABE46570.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 223

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG +      G + +   S  E +  L ++   D+  ++  L       
Sbjct: 3   ILIAEDDQVLADGLLRTLRASGAAADHVASGTEADAALLTNTEFDLLILDLGLPR--MHG 60

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +RA  S +P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  LEVLKRLRARGSALPVLILTAADSVEERVKGLDYGADDYMAKPFSLQELEARVRALIRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGGASSTIKHGPLVYDQAGRVATIDGQMLELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 -EWGEEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220


>gi|317053265|ref|YP_004119032.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|316953004|gb|ADU72476.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 230

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D            G+ G +++   S    E L  +   D  AI   ++  G    
Sbjct: 3   LLLVEDEEKTSTYLRRALGESGFTVDV--SANGAEGLHFALEFDYDAIILDVMLPGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R+  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  RVLEGVRSSKQTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRSA 120

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + +   ++V    R     G    L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGTDITQLQIHDLQVDLLSRRVFRLGTRLDLTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+        + + R +GY ++ 
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKVDTPFAVRLLHTVRGMGYVLEV 223


>gi|206560503|ref|YP_002231267.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198036544|emb|CAR52441.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 224

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D A+  +  +      G  ++  ++         SA  D   ++  L   G   L + 
Sbjct: 6   VEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLP--GADGLAIL 63

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
             +R      P++ +S    +   +    +G DD + KP    E+ AR+  + RR + S 
Sbjct: 64  TAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQASG 123

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + +    R      +  PL   E R+LE++M N G+ + +T +F A++G
Sbjct: 124 VPQQTLLKVGALELDLISRCARRGADEIPLLPTEFRVLEFMMRNAGQTITRTMLFEAVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ H+ +LRKK+        + + R  GY +
Sbjct: 184 -YHFDPGTNLIDVHMGRLRKKIDPPGANPMIQTVRGSGYML 223


>gi|182437916|ref|YP_001825635.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778552|ref|ZP_08237817.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178466432|dbj|BAG20952.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658885|gb|EGE43731.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 237

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 99/240 (41%), Gaps = 33/240 (13%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++         G ++    +G + LE         R D++ ++  +   G 
Sbjct: 7   LFVEDDDVIREATQLALERVGFTVTAMPDGLSGLEAFRAD----RPDIALLDVMVP--GL 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 61  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 120

Query: 119 LKVS------------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
              +                        G + V +DG +    GE   L   E R+L   
Sbjct: 121 FGHAAGPDGLGQGGAEGDAETFGGVLVFGDLEVDTDGMEVRRAGEQVALTPTEMRLLLEF 180

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  G  +++ ++   ++  +    +  VV+ H+ +LR K+    G D +D+ R  GY +
Sbjct: 181 SSAPGTVLSRDRLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIDTVRGFGYKL 235


>gi|146328950|ref|YP_001209795.1| two component phosphate response regulator PhoB [Dichelobacter
           nodosus VCS1703A]
 gi|146232420|gb|ABQ13398.1| two component phosphate response regulator PhoB [Dichelobacter
           nodosus VCS1703A]
          Length = 229

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D   ++   +    D    +E   +L   + +      D+  ++  L  G G K+
Sbjct: 5   ILLVEDEPAIQQLLLYGLQDQYQCIEA-GTLAQAKTILQQQIPDLVLLDWMLPDGSGIKI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R I     +P+I ++     +  +   D G DD + KP    E+ +R+ A++RR+ 
Sbjct: 64  LEDLRKIETLRYLPVIMLTARADERDIIKGLDYGADDYLTKPFSMAELQSRIKALFRRMP 123

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S           I +     +   Q ++  L RRE ++LE  + +  K +++ Q+    
Sbjct: 124 ESEEEQSCLSWEDITMNLLTYEVFFQDKLLKLNRREFQLLECFLRHPNKVLSREQLLDFA 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +E + +  V+  I +LRK   N     PV S R +GY +
Sbjct: 184 W-QGEEDIGDRAVDVAIRRLRKAFENIDEQLPVMSIRGIGYRL 225


>gi|157693741|ref|YP_001488203.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682499|gb|ABV63643.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 240

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +      +   +G     + +   +E L     ED+  +   ++  G+   
Sbjct: 6   ILIADDEEAIVKMVERVLKKEGFK-HIYKAYHADEALDVVKNEDIHLLLLDVMMPGKSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R  ++ P+  ++   S    L  F  G DD + KP +  E++AR+ A   R  +
Sbjct: 65  DVLPEMRKFTKAPIFYLTARTSDVDKLTGFAQGADDYITKPFNPLELVARIKAHLNRTYI 124

Query: 122 S--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S         +  E           + +V+GEV     +   +L+Y   +    ++K QI
Sbjct: 125 SLKEDQDEAQSPYEYAHFSYHPHSAELKVRGEVTACSAQLLSLLKYFCDHPNVVLSKDQI 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++G+     + N V  HI KLR+K+  +    + + + R +GY  
Sbjct: 185 YEKVWGVP-SYGDNNTVMVHIRKLREKIELDPSQPEYIVTIRGMGYKF 231


>gi|149187893|ref|ZP_01866189.1| two-component system response regulator (Pho family) protein
           [Vibrio shilonii AK1]
 gi|148838289|gb|EDL55230.1| two-component system response regulator (Pho family) protein
           [Vibrio shilonii AK1]
          Length = 224

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D + +    +  F  +G+++              +A  DV  ++  L  K     
Sbjct: 3   ILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKK--DGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P+I +S   S++  +    SG DD + KP    E+LAR   + RR K
Sbjct: 61  EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +      GP+ +       + + +   + +RE  +++ L+ N    ++KT I   +
Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G      + NVV+  + +LR K+        + + R +GY +
Sbjct: 181 WG-HQFDPQTNVVDVLVCRLRSKVDKGFATPLIHTLRGVGYVL 222


>gi|116629893|ref|YP_815065.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|238853664|ref|ZP_04644032.1| transcriptional regulatory protein ResD [Lactobacillus gasseri
           202-4]
 gi|282851588|ref|ZP_06260953.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311110472|ref|ZP_07711869.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22]
 gi|116095475|gb|ABJ60627.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|238833702|gb|EEQ25971.1| transcriptional regulatory protein ResD [Lactobacillus gasseri
           202-4]
 gi|282557556|gb|EFB63153.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311065626|gb|EFQ45966.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22]
          Length = 236

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 103/233 (44%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAR-EDVSAIEAFLIGKGEK 59
            ++++D   V +     F  +   ++   + +E  E  ++     D+  ++  L  K   
Sbjct: 4   ILMVEDDNSVAEMMKMFFSKEQWEVDIAKDGIEAVEMFKAHPDSYDIVTLDLNLPRK--D 61

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +E+ + IRA S  +P+I ++   S    +     G D+ V KP     ++AR+ A+YRR
Sbjct: 62  GMEVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRR 121

Query: 119 LKVSNN---------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRV 168
            ++  +            T  +++  D R+      +   L  +E  +L  +     +  
Sbjct: 122 SRIEKDMHASNGVKYDVITKHLKISKDRREVRFDDNIVEGLTPKEFDLLYTMAQKPKQVF 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ ++   ++G ++   EE  V++HI KLR+KL  K G   V +   +GY  D
Sbjct: 182 SRDKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232


>gi|91229001|ref|ZP_01262867.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
 gi|254230618|ref|ZP_04923975.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262394555|ref|YP_003286409.1| two-component system response regulator QseB [Vibrio sp. Ex25]
 gi|91187465|gb|EAS73803.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
 gi|151936858|gb|EDN55759.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262338149|gb|ACY51944.1| two-component system response regulator QseB [Vibrio sp. Ex25]
          Length = 219

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  I      G   E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDDPRLGEQIIETLESTGWVPELSQDGIDALYRATSEEWDAIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|332524805|ref|ZP_08400998.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332108107|gb|EGJ09331.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 244

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD A ++D        +G  +      +    + +    D+  ++  L   GE  L
Sbjct: 12  IVVVDDDARIRDLLRRYLSQEGFEVLLAEDAKALNRVLTRDTVDLIVLDLMLP--GEDGL 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +RA + + P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 70  SICRRLRAANDITPIIMLTAKVEDVDRIVGLEVGADDYLPKPFNPRELLARIHAVLRRRP 129

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            GP       R     GE   L   E  +L+ L+ +  + +++ 
Sbjct: 130 APEAPGAPSKEPQVVNFGPFEFDLSLRRLSKNGEQIALTTGEFSMLKALVRHPRQPLSRD 189

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  IS+LRK L  +      + +   +GY  
Sbjct: 190 KLAQLARGR-EFEPFDRSLDVQISRLRKMLEPDPAQPRYIQTVWGVGYVF 238


>gi|228939139|ref|ZP_04101733.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972017|ref|ZP_04132634.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978626|ref|ZP_04138998.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|229150234|ref|ZP_04278455.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|228633206|gb|EEK89814.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|228781066|gb|EEM29272.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228787676|gb|EEM35638.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228820508|gb|EEM66539.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 232

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 7   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLP--GIDGL 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  + ++ +I ++     +  +     G DD + KP     + AR+ ++ RR++
Sbjct: 65  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 124

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|227889684|ref|ZP_04007489.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227849827|gb|EEJ59913.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 236

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 106/235 (45%), Gaps = 21/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDD----GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++++D   V +     F  +     ++ +G  ++E  +   SS   D+  ++  L  K 
Sbjct: 4   ILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKADPSS--YDIVTLDLNLPKK- 60

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +E+ + IRA S  +P+I ++   S    +     G D+ V KP     ++AR+ A+Y
Sbjct: 61  -DGIEVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALY 119

Query: 117 RRLKVSNN---------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGK 166
           RR  +  +            T  +++  D R+     +V   L  +E  +L  +   + +
Sbjct: 120 RRSHLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKQKQ 179

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ ++   ++G ++   EE  V++HI KLR+KL  K G   V +   +GY  D
Sbjct: 180 VFSRDKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232


>gi|221308070|ref|ZP_03589917.1| hypothetical protein Bsubs1_01408 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312393|ref|ZP_03594198.1| hypothetical protein BsubsN3_01411 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317326|ref|ZP_03598620.1| hypothetical protein BsubsJ_01413 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321590|ref|ZP_03602884.1| hypothetical protein BsubsS_01434 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767066|ref|NP_388137.2| two-component response regulator YcbM [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|238054356|sp|P42244|YCBL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           ycbL
 gi|225184693|emb|CAB12049.2| two-component response regulator [YcbM] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 226

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 11/225 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + +        +G  +      E    L      D+  ++  L       ++ 
Sbjct: 2   LVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLP--KLNGMDF 59

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
            +IIR  S +P++ IS              G DD + KP    E+ ARV A  RR     
Sbjct: 60  LKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119

Query: 123 ------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N       + +  D       GE   L   E ++L    +N  K   K QI+ +
Sbjct: 120 AEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRS 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++   +   ++N++  H+ +LR+K+ +       + +   +GY +
Sbjct: 180 VWNE-EYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223


>gi|170723552|ref|YP_001751240.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169761555|gb|ACA74871.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 224

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLP--GLDGYG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSGSH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + + G + +    R     G+   L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPLQVQVGDLWIDLMARKASRGGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFDNKLLHTIRGMGYVLE 220


>gi|332977099|gb|EGK13903.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 227

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   V          +G  +    +           +  +  ++  L       +
Sbjct: 5   LLLVDDEEQVLQFMEPFLRQEGFQILTAQTGSEALEKAGEKKPALVVLDWMLPE--MSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S++ +I ++        +   + G DD + KP   RE+ AR+ ++ RR   
Sbjct: 63  EVCRELRKMSRMGIIMVTARTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRRMEG 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           L+ +  + + G + +         QG+  PL   E R+L  L A  G   ++  +     
Sbjct: 123 LEFTEQQMQRGELLISESQCRAWKQGKEIPLTPTEFRLLLTLAAKPGIVYSR--LQLLAA 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              +   +E  V++HIS+LRKK+ +       + +    GY  
Sbjct: 181 LEDELLNDERTVDAHISRLRKKIEDAPSDPVYIQTVYGFGYRF 223


>gi|317502228|ref|ZP_07960401.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896343|gb|EFV18441.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 221

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D  ++  G       D  ++                + D+  ++  L       L
Sbjct: 4   IFLLEDDKILSKGISIALKKDEHTVTAVYGYLEALQQYQKQKYDLFLLDINLPD--GNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S+ P++ ++   + +  L+ F  G DD ++KP     +  +V A+ +R  +
Sbjct: 62  EFCKKIRETSETPVLFLTANDTEEDMLEGFGVGCDDYISKPFSIEVLRKKVLAVLKRTGI 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R +   + +  +     ++G+   L   E ++L YLM NRG+ V K  +   ++ + 
Sbjct: 122 GKFRMKYRDLELDKEKCVVLMKGQEIHLTSTEYKLLLYLMENRGRVVTKAMLLEQLWDID 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              V++N V  +I +LR+KL ++   + + +   +GY+ 
Sbjct: 182 GNFVDDNTVRVNIKRLRQKLHDE-KQEYIVTVFGMGYTF 219


>gi|291005149|ref|ZP_06563122.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 13/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D A++++         G  +    + L   E  Q+ A   V+ ++  L       
Sbjct: 7   LLLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQADA-PQVAVLDVMLPN--LDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL R IR  S VP++ +S        +   ++G DD V KP     ++AR+ ++ RRL+
Sbjct: 64  IELCRRIRGCSHVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRRLR 123

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                A      G + V  D  +    G   PL   E R++    A  G  + ++ +   
Sbjct: 124 REPAPASAVRTFGDLEVDLDSLEVRRAGRSVPLTPTELRLVLEFAAQPGVVLTRSALLER 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +    +  VV+ H+ +LR K+    G + V++ R  GY +
Sbjct: 184 VWD-YAWGGDTRVVDVHVQRLRAKI----GRERVETVRGFGYKL 222


>gi|325108974|ref|YP_004270042.1| transcriptional regulator [Planctomyces brasiliensis DSM 5305]
 gi|324969242|gb|ADY60020.1| two component transcriptional regulator, winged helix family
           [Planctomyces brasiliensis DSM 5305]
          Length = 228

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D  +     DG  +      +       ++  D+  ++  L       L
Sbjct: 6   ILVIEDERSILDALVYNLQKDGFDVITATDGQDGLRRAQASLPDLIVLDLMLPVT--DGL 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +RA      + ++ ++        +  F  G DD V KP   + +++RV A+ RR
Sbjct: 64  EVCRQLRADPRTKHIRILMLTAKSEEVDEIVGFSMGADDYVTKPFKVKPLISRVKALLRR 123

Query: 119 LKV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S +      I V        +  E   L   E ++L  L+   G+   + ++  
Sbjct: 124 PSAKSNSQDIVTCRGISVDRMNHRVTLNNEEVLLTPTEFKLLWTLVRQSGRPFRRNELMD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              G  D    E  ++ HI  LR+KL +    D +++ R +GY  
Sbjct: 184 TCRGE-DANALERTIDVHIRSLRQKLDDH--ADLIETVRGVGYRF 225


>gi|255505684|ref|ZP_05347547.3| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
 gi|255266531|gb|EET59736.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
          Length = 248

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 105/223 (47%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++   A    +G   +  +       L  S R DV  ++  L G G    
Sbjct: 22  ILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLG--GY 79

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + +R   ++  +I +S    L+  +   D G DD + KP   +E+ AR+ A+ RR  
Sbjct: 80  QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139

Query: 120 KVSNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +V  +      + +                 L  +E +++EYLM N  + +++++I   I
Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D  VE N V+ +IS LRKKL++      + + R +GY++
Sbjct: 200 WG-YDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTL 241


>gi|222529736|ref|YP_002573618.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456583|gb|ACM60845.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 234

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
            ++DD   + +         G S++ F + E        +  D+  ++  L        E
Sbjct: 7   YIVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSEPDIVILDIMLPD--IDGYE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR +S+VP+I +S        +   + G DD + KP    E+ AR+  I RR+  S
Sbjct: 65  ICKRIRKNSEVPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKILRRINKS 124

Query: 123 ----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +N  ET  I+V  + R+    G    L  +E      L+    K + ++ I   I+
Sbjct: 125 PIKQDNVIETFGIKVDFNQRNVFYNGTHIELSPKEFETFALLLKESTKVLKRSYILERIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G      +E +V+  + +LRKK+        + +   LGY ++
Sbjct: 185 GDP-ALYDERMVDDVVKRLRKKILQYNLPVEIKTMWGLGYKLE 226


>gi|189346302|ref|YP_001942831.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
 gi|189340449|gb|ACD89852.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
          Length = 233

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G       + E           D+  ++  L   G   
Sbjct: 5   LLLVVEDDQNLAKLLGYNLERAGYKYHISETGEDALDQLLKRSFDLILLDIMLP--GIDG 62

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ R IR H     +P+I ++        +  F+ G+DD V KP   RE+  R+ AI +
Sbjct: 63  FEVCRRIRQHQMLKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILK 122

Query: 118 RLKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +            G + V        + G+   L   E ++L  L+  +G+  ++  +
Sbjct: 123 RDRRQRAGLQEVLSAGGLDVDITRHQITLDGKGVILTLMEFKLLVALLKRKGQAQSREAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S ++ + D+ +    +++HI++LR+KL        + + R LGY  D
Sbjct: 183 LSDVWDV-DKTINTRTIDTHITRLREKLGETG--KMIKTVRGLGYKFD 227


>gi|330811570|ref|YP_004356032.1| two-component response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379678|gb|AEA71028.1| putative two-component response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLHRGLSEQGYTVDVAPDGIEGLHLALETDYAVIVLDVMLP--GLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G+   L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPVQVSIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLE 220


>gi|229029708|ref|ZP_04185781.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228731596|gb|EEL82505.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 232

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      D++ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDLALLDVMLP--GIDGF 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++     +  +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 65  QVCKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIE 124

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V + +A T   GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHDEKANTIISGPFSLNVIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|119944747|ref|YP_942427.1| response regulator BaeR [Psychromonas ingrahamii 37]
 gi|119863351|gb|ABM02828.1| response regulator BaeR [Psychromonas ingrahamii 37]
          Length = 227

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +       F   G       N LE  +W   + + D+  ++  L   G   
Sbjct: 8   ILIVEDEPALASVLCEYFIQSGFQTHIIDNGLEVIDW-VKNYQPDLLILDLMLP--GRNG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R  SQVP++  +        L   + G DD + KP   RE++ RV  I RR K
Sbjct: 65  LDIYRELRTFSQVPVVMATARIDEIDRLLGLELGADDYICKPYSPREVVIRVKNILRRSK 124

Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N   +    +++        +  +   L   E R+L     +  +  ++ Q+ + IY 
Sbjct: 125 EGNGTLQGYAGLQIDEQKMMASLNQQTIILTPAEFRLLSVFNKHPEQVFSREQLMTQIY- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
                V +  ++SHI  LRKK+++     + + S   +GY +
Sbjct: 184 SDGRIVTDRTIDSHIKNLRKKMQDVAPESECIKSIYGIGYKL 225


>gi|160872789|ref|ZP_02062921.1| DNA-binding response regulator [Rickettsiella grylli]
 gi|159121588|gb|EDP46926.1| DNA-binding response regulator [Rickettsiella grylli]
          Length = 224

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG        G +++     +       +   DV  ++  L       L
Sbjct: 3   ILLVEDDGSLGDGIQKGLKQYGYTVDWLTDGQTALSSIKTESFDVILLDLNLP--KLSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKP-IHHREILARVAAIYRRL 119
            + R +RA     P++ ++   S++  +   DSG DD  +K      E+ AR+ A+ RR 
Sbjct: 61  SVLREVRAAGITTPILILTARQSVEDRVKGLDSGADDYYSKYYFDLDELSARIRALQRRS 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++       I +        ++G+V  L RRE  +L+ L+ N G  V++  +   +
Sbjct: 121 SNNRASPLLTYRDIELNPSAFTVTLKGQVVNLSRREFSLLQKLLENAGHVVSRDSLNQCL 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           YG  D+ ++ N +E H+  LRKKL +      + + R +GY 
Sbjct: 181 YGWEDD-IDSNTLEVHVHNLRKKLAHTH---FIRTIRGVGYM 218


>gi|51244452|ref|YP_064336.1| Pho family two-component response regulator [Desulfotalea
           psychrophila LSv54]
 gi|50875489|emb|CAG35329.1| probable two-component system response regulator (Pho family)
           [Desulfotalea psychrophila LSv54]
          Length = 224

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D       + G +++  ++               + I+  L  +    L
Sbjct: 3   LLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPER--DGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA   + P++ +S   S+   +     G DD + KP    E+L RV A+ RR +
Sbjct: 61  SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R   GP+ +    +     G    LP +E  +L Y+  N G  ++KT I   +Y
Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++   + NVV+  + +LR K+    G   + + R +GY +
Sbjct: 181 G-YNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVL 221


>gi|307132852|ref|YP_003884868.1| Response regulator of the two-component transcriptional regulatory
           system (PmrA-PmrB BasR-BasS) [Dickeya dadantii 3937]
 gi|306530381|gb|ADN00312.1| Response regulator of the two-component transcriptional regulatory
           system (PmrA-PmrB BasR-BasS) [Dickeya dadantii 3937]
          Length = 222

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G +    ++G   +  ++ +  + L +SA   +  ++  L    E  L
Sbjct: 3   LLIVEDDTLLQEGLLQAMRNEGYVCDCASTAKEADALITSAHYSLVVLDLGLPD--EDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L  R  R   Q P++ ++   ++   +   D G DD + KP    E  ARV A+ RR +
Sbjct: 61  TLLNRWRRNRYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S++       I +  + +   +  +   L  +E  IL  L+   G +V +  +   +Y 
Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+    N +E HI  LR+K+    G + + + R  GY +
Sbjct: 180 SWDDDPSSNSLEVHIHNLRQKI----GKNRIKTLRGFGYLL 216


>gi|254429139|ref|ZP_05042846.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195308|gb|EDX90267.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 225

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +  +     +  ++      +      +    D+  ++  L        +
Sbjct: 5   LIVEDEPRIAEPLMFALEREHFAVTHVTLGQQALDAVAGQAVDLVVLDVGLPD--MNGFD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R HS++P++ ++        +   + G DD V KP   RE++AR+ AI +RL   
Sbjct: 63  VLKQLRQHSELPVLFLTARQDEVDRILGLELGGDDYVTKPFSPREVVARIRAILKRLGPK 122

Query: 123 N----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +  +T   +V   G     +     L R E RIL  ++   G+  ++ Q+     
Sbjct: 123 SDADIDTNKTTLWQVDDSGLRVFFRHTELSLTRSEYRILTTMVQRPGQVFSRAQLLDIC- 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              DE   E  V++HI  LR KLR   G   + ++R +GY +D
Sbjct: 182 -DSDEDSFERSVDTHIKTLRAKLRPLNGDHLIVTRRGIGYLLD 223


>gi|168704577|ref|ZP_02736854.1| two component transcriptional regulator, winged helix family
           protein [Gemmata obscuriglobus UQM 2246]
          Length = 228

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 6/216 (2%)

Query: 7   DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           D+A   D  +    ++G ++E            ++A  DV  ++  L   GE  L L + 
Sbjct: 10  DQADFADFVVRGLREEGFTVESAADARAAWHALATADWDVVLLDRGLP--GEDGLSLLKR 67

Query: 67  IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNN 124
           +RA  +  P++ ++   ++   +   D+G DD + KP    E+LARV A+ RR   V+  
Sbjct: 68  LRAAGRFTPVLMLTARDAVPDRVAGLDAGADDYLTKPFAFDELLARVRALARRPAAVTGT 127

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 +RV    +  E  G    L  +E  +L   + + G+ + +T+I+  ++      
Sbjct: 128 TLSHADVRVDLATQRAERAGHKLDLTAKEYALLVLFLRHPGQVLTRTRIYEHVWDER-YD 186

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              N +E H+  LR+KL    G   + + R  GY  
Sbjct: 187 GTSNTLEVHVKDLRRKLEGH-GPRLIHTLRNRGYRF 221


>gi|118476337|ref|YP_893488.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415562|gb|ABK83981.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 225

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 86/220 (39%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     ++  EE +      +   I   ++ +     
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNC--VCAVSGEEAISHIENRNFKFILLDIMMRKMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYQGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|153827358|ref|ZP_01980025.1| transcriptional regulator [Vibrio cholerae MZO-2]
 gi|255746657|ref|ZP_05420604.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262158752|ref|ZP_06029865.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262166974|ref|ZP_06034693.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|149738727|gb|EDM53069.1| transcriptional regulator [Vibrio cholerae MZO-2]
 gi|255736411|gb|EET91809.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262024615|gb|EEY43297.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|262029325|gb|EEY47976.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
          Length = 218

 Score =  215 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 101/221 (45%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   +  ++    +  Q   + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--DCLHAETIADVKQHWDKADLVILDRQLPD-GDSVQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            L    +    +P+I ++   +++  +   D+G +D + KP    E+ AR+ A  R    
Sbjct: 62  HLMDW-KKIKDIPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRSPDS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +++  T  + +    R+    GE   L R E  +L +L +N G+   + ++   ++G
Sbjct: 121 GQDDSKVVTSNLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDELLDHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 -YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 216


>gi|220928012|ref|YP_002504921.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998340|gb|ACL74941.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 228

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ +G   +    G ++   +   + E L      +   I   +       L
Sbjct: 4   ILIVEDDKLLNEGISIVLKKHGHTV--LSGYSYNEALCLFLNNNFELILLDINLPDRSGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S VP+I I+   + Q  ++ F +G DD + KP     +  R+ A+ RR   
Sbjct: 62  ELCNEIRKKSDVPIIFITANDTEQDIVNGFVNGCDDYIAKPFSLEVMNRRIQAVLRRTGT 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     +G I +  +            L   E ++L  L  N G+ + +  I   ++G 
Sbjct: 122 EDKSIFRSGEISINYEKMVVSKGKISLKLTATEYKLLTLLTQNSGQVLTRDIILQRLWGT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            +  V+EN V  ++ +LR+K+ +       + +   +GY
Sbjct: 182 DEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGIGY 220


>gi|332184581|gb|AEE26835.1| DNA-binding response regulator [Francisella cf. novicida 3523]
          Length = 228

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 12/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +G +     +G+ +   +  E  +    S   D+  ++  +  K    L
Sbjct: 3   ILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIIVLDIGMPIK--TGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +R    +VP+I ++    L+  +   D G DD + KP   +E++AR+ AI RR+ 
Sbjct: 61  EVLRNVRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K  N     G              G + P+ ++E  +L  L+ N G+ V KTQ+  
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +Y   D+ ++ N +E H+  LRKK+      + + + R +GY
Sbjct: 181 EVYST-DKEMDTNTLEVHMHNLRKKI---NIPNFIQTIRGVGY 219


>gi|325914487|ref|ZP_08176831.1| two component transcriptional regulator, winged helix family
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325539257|gb|EGD10909.1| two component transcriptional regulator, winged helix family
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 221

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +           +++   S    +      R     ++  L   GE  L
Sbjct: 3   LLLVEDDTMLANAICDGVRQQSWTIDHVGSANAAKTALVDHRYTAVLLDIGLP--GESGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R+H    P+I ++    L   +   D+G DD + KP    E++AR+ AI RR +
Sbjct: 61  TVIRFLRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAITRRSQ 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + V    R     G    L   E R+L  LM   G+ V K Q+  ++YG
Sbjct: 121 GRVVPVLSQGDVCVDPSSRKVTRAGTWVALSAHEYRLLLALMERAGRVVTKDQLEESVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E    N++  ++ +LR+KL    G + + +    GY I
Sbjct: 181 GPSEGG-SNMIAVYVHQLRRKL----GDELISTVYGQGYMI 216


>gi|281419285|ref|ZP_06250301.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|281407151|gb|EFB37413.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 231

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D        +G ++    +   ++ L++   E +  +   ++      L
Sbjct: 6   ILVCDDDKAIVDALEIYLKQEGYNV--VKAHTGKQALKALEEEKIHLVLMDVMMPELDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR    +P+I +S        +   + G DD V KP +  E++ARV + +RR   
Sbjct: 64  SATVKIREELNIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQFRRYTQ 123

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  +   + G + + ++ ++  V GE+  L   E  I+ +LM N GK  +  QI+ 
Sbjct: 124 LGGAERKSGVLKNGGLELDTEAKELRVDGELVKLTATEYGIVLFLMKNAGKVFSIDQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++     +  EN V  HI ++R+K+  N      +     +GY ++
Sbjct: 184 NVWKEPAYS-SENTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKME 229


>gi|223938485|ref|ZP_03630378.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223892904|gb|EEF59372.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 237

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 94/225 (41%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD     +         G  +      E       S   ++  ++  +       L
Sbjct: 15  ILVVDDEPDAIELIKFNLKSAGYEVITAADGEEALNKARSLLPNLIILDLMIPEV--DGL 72

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ +I+R     S +P+I ++   +    +   + G DD V KP   RE++ RV  + R 
Sbjct: 73  EVCKILRRDARVSGIPIIMLTAKAAEIDRVLGLELGADDYVTKPFSPRELVLRVKRLLRS 132

Query: 119 LKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + +  +++      + +        V+G+   L   E ++L  L   RG+  ++ Q+  
Sbjct: 133 GQTTGEKSDEIILKELSLNIPKHLALVKGKPVELTATEFKLLTVLAQRRGRVQSREQLLQ 192

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D  ++   V++H+ +LR+KL        +D+ R +GY  
Sbjct: 193 DVW-EYDNLIDTRTVDTHMRRLREKLGAA--ARYLDTVRGVGYRF 234


>gi|299138867|ref|ZP_07032044.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298599021|gb|EFI55182.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 227

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++I+D   ++      F  +G  +              + R     ++  L   G   
Sbjct: 3   LILVIEDDPRIQRALKRQFTAEGYEVHIEGEGPAGLTACKNMRPATVVLDLMLP--GLSG 60

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+ + I+A S   P+I +S    +   +   ++G DD V KP   RE+LARV A  RR 
Sbjct: 61  REVCKEIKAWSPDTPVIILSAISEVADKVLLLETGADDYVTKPFSPRELLARVQAAMRRT 120

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  V       G + V     +    G + PL   E ++L + + N G+ +A+ ++ S +
Sbjct: 121 RRTVQEPPLNFGNVTVDFLKMEVYKAGSLVPLTAHEFKLLRFFLDNPGRAIARDELLSGV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220
           +GL +  +    V++ I KLR+KL      +PV   +    GY  
Sbjct: 181 WGL-NFHLTTRTVDNQILKLRQKLEADPA-NPVHFRTVHGFGYKF 223


>gi|259047806|ref|ZP_05738207.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
 gi|259035483|gb|EEW36738.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
          Length = 240

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++  S E   + + ++ L+      D+  I   ++      
Sbjct: 13  ILVVDDDREIVELLTIYLKNE--SYEIVKAYDGKQALEKLKMYPDIDMIILDIMMPRLDG 70

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +   +R  + Q+P++ +S   +    +    +G DD V KP +  E++ARV ++ RR 
Sbjct: 71  ISVVHEVRKENAQLPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRRS 130

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +N     GP+ +  +        G+   L   E  IL  L ++  +  +  +I
Sbjct: 131 TITQEGPANEEITIGPLTIKKESHQVTTSDGKEIQLTVLEFGILFLLASHPNRVFSADEI 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  ++   +  V    V  H+S LR K+     G   +++   +GY I+
Sbjct: 191 FETVWQQ-ESIVSTKTVMVHVSHLRDKIAEATGGEKVIETVWGVGYKIE 238


>gi|255973443|ref|ZP_05424029.1| two-component response regulator [Enterococcus faecalis T2]
 gi|256957737|ref|ZP_05561908.1| two-component response regulator [Enterococcus faecalis DS5]
 gi|256963145|ref|ZP_05567316.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|257080045|ref|ZP_05574406.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|257085734|ref|ZP_05580095.1| two-component system response regulator [Enterococcus faecalis D6]
 gi|294780611|ref|ZP_06745972.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|307270032|ref|ZP_07551354.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307272184|ref|ZP_07553444.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307282378|ref|ZP_07562585.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|255966315|gb|EET96937.1| two-component response regulator [Enterococcus faecalis T2]
 gi|256948233|gb|EEU64865.1| two-component response regulator [Enterococcus faecalis DS5]
 gi|256953641|gb|EEU70273.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|256988075|gb|EEU75377.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|256993764|gb|EEU81066.1| two-component system response regulator [Enterococcus faecalis D6]
 gi|294452221|gb|EFG20662.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|306503741|gb|EFM72968.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306511073|gb|EFM80083.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306513608|gb|EFM82218.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|315026240|gb|EFT38172.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315032211|gb|EFT44143.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315035425|gb|EFT47357.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|329574672|gb|EGG56234.1| putative transcriptional regulatory protein ResD [Enterococcus
           faecalis TX1467]
          Length = 230

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D        + +++   +  +       +   D+  ++  L        E
Sbjct: 6   LIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPT--MDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR   Q P++ +S        +     G DD + KP    E++AR  A   R ++ 
Sbjct: 64  ICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +N        +   I V +      V         +E ++L +LM +  +   K ++F +
Sbjct: 124 SNAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           ++G      E + V  HI ++R+KL+   L   P+++    GY  +
Sbjct: 184 VWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFN 229


>gi|271961705|ref|YP_003335901.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504880|gb|ACZ83158.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + D        +G +++  +      W+ S    DV  ++  L         
Sbjct: 4   LLVEDEKRLADLLKGGLAGEGFAVDVAHDGRDGLWMASENVYDVIVLDVMLPR--MNGYT 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R A +  P++ ++    +    +  D+G DD ++KP  +  +LAR+ A+ RR   
Sbjct: 62  VCARLRDAENWTPILMLTAKDGVHDEAEALDTGADDFLSKPFSYVVLLARLRALIRRGGR 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +       G + V   G           L  +E  +L  L    G+ V+K+++ +  +  
Sbjct: 122 ARPVSITVGDLTVDPAGLRCRRGEVEIALTPKEFAVLHGLARRPGEVVSKSELLAQAWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           F    + N+VE +IS LR+K+ +  G   + + R  GY ++
Sbjct: 181 FSYDGDPNIVEVYISALRRKIDSPFGRSSLVTVRGAGYRLE 221


>gi|226946662|ref|YP_002801735.1| response regulator [Azotobacter vinelandii DJ]
 gi|226721589|gb|ACO80760.1| response regulator [Azotobacter vinelandii DJ]
          Length = 267

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        D G ++   +  +  E L    R DV  ++  +   GE  L
Sbjct: 31  ILVVDDEQDLRALLQRYLSDQGYAVRALDGGQHLERLLGRERFDVLVLDVMMP--GEDGL 88

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +RA  +  P++ ++        +   + G DD + KP + RE+ AR+ A+ RR +
Sbjct: 89  SLCRRLRARGETIPIVMLTARGDPLDRIIGLEMGADDYLPKPFNPRELQARIEALIRRQR 148

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      + R + GP  +    R     G   PL   E  +L+ L  + G+ + + 
Sbjct: 149 MLGAHTGPLPGDGRIDFGPFSLHLGERRLRRDGGDIPLTSGEFALLQALARHPGRPLGRD 208

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++     G  D    +  ++  + +LR+ + +       + +   LGY +
Sbjct: 209 RLIELSRGR-DHEASDRSIDVQVMRLRRAIEDDPAQPRYIQTVWGLGYVL 257


>gi|255281374|ref|ZP_05345929.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
 gi|255267862|gb|EET61067.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
          Length = 237

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 86/233 (36%), Gaps = 15/233 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A     G              L      D+  ++  L   G+   +
Sbjct: 8   LIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLP--GKSGYD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR    +P++ ++        +     G DD + KP    E++ARV A  R+    
Sbjct: 66  ICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQYDRM 125

Query: 123 NNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             +                +R+  +             P RE  +L++L  N     ++ 
Sbjct: 126 MRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIVFSRE 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSIDWN 223
           Q+F  I+G +D   +   V  HI+++R+K+ +      + ++    GY  + +
Sbjct: 186 QLFEKIWG-YDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237


>gi|218460387|ref|ZP_03500478.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli Kim 5]
          Length = 218

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 9/217 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G++     +             D+  ++  +       L
Sbjct: 5   ILVVDDEPHIRDVICFALERAGLTSTAVRTGTEAMAAFRRGNIDLIILDIGMPD--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  S +P++ +S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 63  EVCRQIRKTSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKRSGN 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     G I +   GR       V  +   E  ILE L++  G   ++ Q+  
Sbjct: 123 GAAPDRRHAALVAGEISLDRHGRTVMFGDSVLGMTALEFAILEALLSRPGMVFSREQLME 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           A YG     V +  ++SHI  +R K     G   + +
Sbjct: 183 AAYGAGTY-VADRTIDSHIRNIRAKFTAVGGAGIIAT 218


>gi|168204365|ref|ZP_02630370.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170664057|gb|EDT16740.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 234

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       + G ++  F      E L+   +E++      ++        
Sbjct: 7   LVVEDEKEIAEAIEIYLKNQGYNV--FKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGAT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR    
Sbjct: 65  MVMKIRESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +   N    G + V SD ++  + G+V  +   E +IL+ L+ + G+  +  +
Sbjct: 125 LNMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++     AV  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 185 IYERVWNGN--AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 232


>gi|169343028|ref|ZP_02864056.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298937|gb|EDS81011.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 234

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +       + G ++  F      E L+   +E++      ++        
Sbjct: 7   LVVEDEKEIAEAIEIYLKNQGYNV--FKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGAT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   IR     P+I +S        +   + G DD V KP +  E+LARV +  RR    
Sbjct: 65  MVMKIRESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +   N    G + V SD ++  + G+V  +   E +IL+ L+ + G+  +  +
Sbjct: 125 LSMVKKDEKKTNSYVIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++   + AV  + V  H+  +R+K+  +      +     +GY I+
Sbjct: 185 IYERVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 232


>gi|75675389|ref|YP_317810.1| two-component transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74420259|gb|ABA04458.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 238

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D  +  F + G   E     E           DV  I+  L  +    L
Sbjct: 17  LLIIEDDRESADYLVKAFREVGHIAELARDGEEGLSFADGGDYDVLVIDRMLPKR--DGL 74

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 75  SVIGCLREKGILTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRHG 134

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +    R     GE   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 135 GRAEETLYRVGDLELDRLSRRVARGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 194

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 195 D-YHFDPQTNVIDVHISRLRSKIDKGFEQPLLHTIRGAGYMV 235


>gi|302874388|ref|YP_003843021.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307691010|ref|ZP_07633456.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577245|gb|ADL51257.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 234

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + D       ++   +   +++  EE L+     ++      ++       
Sbjct: 5   ILIAEDDKDIIDLLKLYLENEKFQV--LSAINGEEALEIVENNEIHLAILDIMMPKLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL + IR  S +P++ +S        +   D G DD + KP +  EI+ARV +  RR   
Sbjct: 63  ELTKKIREISNMPILILSAKNLDSDKILGLDLGADDYLTKPFNPLEIIARVKSSIRRCYN 122

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      N    G + + ++       G    +   E RIL  LM + G+   K Q
Sbjct: 123 LKADEVASEKENILTVGELSLNTESFMLTKGGNEISITPTEYRILALLMKSPGRVYTKMQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           I+  I G +    +EN +  HISKLR K+ +       + + R LGY I+
Sbjct: 183 IYELIKGEY-FESDENTIMVHISKLRDKIEDDSKNPLYIKTIRGLGYKIE 231


>gi|229096516|ref|ZP_04227487.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229102609|ref|ZP_04233313.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|229115490|ref|ZP_04244896.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228667903|gb|EEL23339.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228680836|gb|EEL35009.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228686722|gb|EEL40629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +   ++ E    +      DV+ ++  L   G    
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCDHTVDVALLDVMLP--GIDGF 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + ++ +I ++        +     G DD + KP    E+ AR+ ++ RR++
Sbjct: 65  QVCKTIREENKKMGIIMLTARVQDGDVVQGLGIGADDYITKPFSPVELTARIQSLLRRIE 124

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHKEKTNTITSGPFSLNIIEERLYRDGQLVDLTPTEYMILQYLMNQSSKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|239502107|ref|ZP_04661417.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB900]
 gi|260549020|ref|ZP_05823241.1| heavy metal response regulator [Acinetobacter sp. RUH2624]
 gi|294648943|ref|ZP_06726393.1| two component response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|193078364|gb|ABO13342.2| Heavy metal response regulator [Acinetobacter baumannii ATCC 17978]
 gi|260407748|gb|EEX01220.1| heavy metal response regulator [Acinetobacter sp. RUH2624]
 gi|292825159|gb|EFF83912.1| two component response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 227

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D       + G   +        +    S   D+  ++  L        
Sbjct: 3   ILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLTGKHQALSEEYDLIILDVMLP--KLDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   IR     +P++ +S    +   +   + G DD + KP    E+LAR+ ++ RR  
Sbjct: 61  NIINDIRKSGKSMPILFLSARDQIDDRVKGLELGADDYLVKPFAFAELLARIKSLLRRGQ 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  +N      + +    R     G+   L  +E  ++E  M  RG+ + +  I S I+
Sbjct: 121 QKEDSNLITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+ +      + + R +GY ++ 
Sbjct: 181 DM-NFDSDTNVVEVAIKRLRNKIDSNFTPKLIQNIRGMGYVLEV 223


>gi|315028795|gb|EFT40727.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
          Length = 258

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +  + +++ +   +        +  ++  +   G    +
Sbjct: 33  LIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMP--GMDGFQ 90

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  +++P++ ++      + +    SG DD + KP    E +ARV ++ RR    
Sbjct: 91  VLEKIRETNRLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTNF 150

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N             + +  + R    +     LP +E  IL Y   N+GK + K QIF  
Sbjct: 151 NSLHEPIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFEK 210

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++       ++N + + ISKLRKK+ +       + + + +GY  
Sbjct: 211 VWQEP-YVYDDNNIMAIISKLRKKIEDNPSSPTYIQTVKGIGYRF 254


>gi|295096184|emb|CBK85274.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 225

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 6   LVVEDNALLRHHLKVQLQEMGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPD--EDGLS 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ RR   
Sbjct: 64  LIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLRRNSG 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 124 LASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 183 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGYLFE 223


>gi|257439293|ref|ZP_05615048.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165]
 gi|257198168|gb|EEU96452.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165]
          Length = 242

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 19/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEK 59
            ++ +D   ++DG   L      S EG++ +E E   ++    R +V  +   ++  G  
Sbjct: 6   ILIAEDDPDIRDGVRILL-----SGEGYHIIEAENGTRALEVFRPEVDLVILDIMMPGMS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L +   +R  S VP++ ++        L    +G DD + KP    E+ ARV A+ RR 
Sbjct: 61  GLRVCEELRKLSTVPILFLTAKSQESDKLLGLTAGGDDYLPKPFSFAELSARVKALLRRY 120

Query: 120 -----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                      +  N    +  +++  D     V GE   L   E +IL  LM +  +  
Sbjct: 121 CVYQGKGQAPARAENLTLCSHGVKLALDCNRVWVDGEEIDLTETEYKILRLLMQSPQRIF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               I+  ++           V  HI  LR K+  +      + +    GY  
Sbjct: 181 PVQVIYEDVWQEPYFYTSNGTVMVHIRNLRMKIEKDPQNPARLQTMWGKGYRF 233


>gi|255034088|ref|YP_003084709.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254946844|gb|ACT91544.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 232

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   V          +G  +      +    +    + DV  ++  +       +
Sbjct: 3   LLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPI--INGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R  R A    P++ ++   + +  +   DSG DD + KP    E+ AR+  + RR K
Sbjct: 61  EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 ++     G + +    +  +  G+   L   E R+LEYL++N  + + + +I  
Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ + +  +  NVV+ +I+ LRKK+        + +   +GY I
Sbjct: 181 NVWDI-NFNLGTNVVDVYINYLRKKIDKNHDIKLIHTVFGMGYVI 224


>gi|70730512|ref|YP_260253.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344811|gb|AAY92417.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 224

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G  ++  N+      L      ++  ++  L   G+   
Sbjct: 3   ILVIEDEPKTADYLHQGLSESGYVVDRANNGVDGLHLIQQQPYELVILDINLP--GKDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++   ++ +    ++ ++    L+  +   D G DD + KP    E+LARV  + RR + 
Sbjct: 61  QVLEQLQGNYPARVMMLTARGRLEDKVKGLDMGADDYLVKPFQFPELLARVRTLMRRSEV 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V     +   +++               L  +E  +L  LM + G+ + +TQI S ++ 
Sbjct: 121 IVQPEVLQVADLQLDPRRHRAYRGSRRIDLTTKEFTLLHVLMRHSGEVLTRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  IS+LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSISRLRGKIDDASDVKLIHTLRGVGYVLE 221


>gi|238785583|ref|ZP_04629563.1| Two-component system response regulator [Yersinia bercovieri ATCC
           43970]
 gi|238713518|gb|EEQ05550.1| Two-component system response regulator [Yersinia bercovieri ATCC
           43970]
          Length = 227

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 102/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G + E    L  +E +  +   D +A+   ++      +
Sbjct: 3   ILLVDDDVELGTMLREYLSGEGFNAE--LVLTGKEGIDGALSGDYTALILDIMLPDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R +R  S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 61  DVLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDE 120

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   ++    G + +    R  E QG+ F L   E  +LE L+ +  + V K ++ 
Sbjct: 121 HPDLSSTDDSVITHGDLTLNPSTRSSEWQGKTFDLTASEFNLLELLLRSPDRVVTKDELS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 DKGLGRPREAYD-RSVDVHISNIRQKLAALPGNTLNIETVRSIGYRI 226


>gi|291527568|emb|CBK93154.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 222

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       +    +  F + +           D+  ++  L    E  
Sbjct: 3   LIYIVEDDESIREIETIALKNSNYIVSAFENAKEFYKKLDELVPDLILLDVMLPD--ESG 60

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            ++ R +R       +P+I ++   +    +   D G DD + KP    E++ RV A+ R
Sbjct: 61  YDIVRKLRKRPATQDIPIIMVTAKSTEMDMIKGLDGGADDYIKKPFSIMELITRVKALLR 120

Query: 118 RLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R      +  +   + +  +     V  E   L  +E  +L  LM ++G  + +  I  +
Sbjct: 121 RTAKEEPKLLKLDDLVIDHERHVVTVNNEPVDLTYKEYELLRLLMGSQGIVMTREVIMRS 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   D   E   V+ HI  LR KL +      + + R +GY I+
Sbjct: 181 VWDT-DFEGETRTVDMHIKTLRHKLGDYGS--RIKTVRNVGYVIE 222


>gi|187924179|ref|YP_001895821.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187715373|gb|ACD16597.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 219

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G  A     G +++             +    +  ++  L       +E
Sbjct: 4   LLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKAGLALDTTAYALVLLDLGLPRV--SGME 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R +   VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR + 
Sbjct: 62  LLKRLRDSGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQG 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +     + V    +  EV     PL  RE  IL  L+ N+G   +++++  ++YG 
Sbjct: 122 RSVEQIRYQDLTVNPAAQTVEVGTTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E +E N +E H+S LRKKL    G   + + R +GY ++
Sbjct: 181 WQEEIESNAIEVHVSNLRKKL----GAKLIKTVRNIGYVVE 217


>gi|300788479|ref|YP_003768770.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797993|gb|ADJ48368.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 232

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 12/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A    +G  +E  +         +++  D+  ++  L   G   LE
Sbjct: 11  LVVEDDVTIAGSIAARLRAEGFGVEVVHDGPAAVEADTASEPDLVVLDVMLP--GFDGLE 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R I+    VP++ ++        L     G DD + KP   R + ARV A+ RR++ S
Sbjct: 69  VCRRIQGRRPVPVLMLTARADETDMLVGLGVGADDYLTKPFSMRVLTARVHALLRRVERS 128

Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    R   G + +  D R     G    L   E  +L +          + ++ S ++
Sbjct: 129 ASVAGTRIVLGDLEIDVDQRRVARAGVAAQLTPIEFDLLVHFARRPRVVQPRERLLSEVW 188

Query: 179 GL--FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                  +     V+SHI  LR+KL    G D + +   +GY+++
Sbjct: 189 DWDVHGTSAGTRAVDSHIKALRRKL----GADLIRTVHGVGYALE 229


>gi|297539212|ref|YP_003674981.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297258559|gb|ADI30404.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 224

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +  I  F + G++                   D   ++  L        +
Sbjct: 6   LIIEDEPAIAETLIYAFKEAGIATTHKLLGGDAITQIKQQTFDFVILDVGLPD--MTGFD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + ++IRA S +P++ ++        +   + G DD V KP   RE++ARV AI RR  + 
Sbjct: 64  VCKLIRAESNIPILFLTARNHEIDRIVGLEIGADDYVTKPFSPREVVARVNAILRRTALK 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             ++ +     V       + +G++  L R E  +L+ L+    +  ++ Q+   ++ + 
Sbjct: 124 QESQHKNVSFVVDELANRIQYRGQLLDLTRYEFLLLKTLIQQPQRVFSRNQLMDIVW-VN 182

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            E   E  V++HI  LR KLR   +  + + + R +GYS+
Sbjct: 183 AENTLERTVDAHIKTLRAKLRAVDMQSEAIITHRGMGYSL 222


>gi|288549514|ref|ZP_05967289.2| DNA-binding response regulator PhoP [Enterobacter cancerogenus ATCC
           35316]
 gi|288318237|gb|EFC57175.1| DNA-binding response regulator PhoP [Enterobacter cancerogenus ATCC
           35316]
          Length = 224

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQEMGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPD--EDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+H   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ RR   
Sbjct: 63  LIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPQDVITTVRGQGYLFE 222


>gi|225377534|ref|ZP_03754755.1| hypothetical protein ROSEINA2194_03184 [Roseburia inulinivorans DSM
           16841]
 gi|225210611|gb|EEG92965.1| hypothetical protein ROSEINA2194_03184 [Roseburia inulinivorans DSM
           16841]
          Length = 220

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++  +   G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSN-PLKLNMEELHRYDLILLDIMMP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    ++ + +HI  +R K  +   + P+ +   +GY  +
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWE 219


>gi|62179752|ref|YP_216169.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|73621399|sp|Q57QC3|PHOP_SALCH RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|62127385|gb|AAX65088.1| response regulator in two-component regulatory system with PhoQ,
           transcribes genes expressed under low Mg+ concentration
           (OmpR family) [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|219523861|gb|ACL14893.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
 gi|322714222|gb|EFZ05793.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 224

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQDSGHQVDATEDAREADYYLNEHLPDIAIVDLGLPD--EDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 63  LIRRWRSSDISLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGYLFE 222


>gi|310827010|ref|YP_003959367.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308738744|gb|ADO36404.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 230

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D A +      L  + G  +   F+  E +  L+   + D+  ++  L   G   
Sbjct: 6   ILIVEDDADINSLLEKLLTNAGYHVRPAFSGSEGKMCLE-QYQYDLVLLDLMLP--GVTG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
             L   IR  S VP+I IS   S+   +D    G DD + KP    E+LARV A  RR  
Sbjct: 63  EALVAQIRRSSTVPIIIISAKASVADRIDLLKLGADDFICKPFDVGEVLARVEAQLRRAV 122

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S     +G + + +D  +  ++ +   L  RE +IL  LM++  K   +  +F
Sbjct: 123 AFSEAGGSVKILTSGDLVLDADSMEVRLKDQPVSLTVREFKILHLLMSHPKKVFTRENLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
           + ++       E+N V  HIS +R KL  K+  D   + +   +G+ ++
Sbjct: 183 TQVW-EDAFLGEDNTVNVHISNIRSKL-AKIDPDTSYIKTVWGIGFKME 229


>gi|299541675|ref|ZP_07052005.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
 gi|298725770|gb|EFI66404.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
          Length = 223

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 92/221 (41%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +    + +    L      D++ ++  +   G    
Sbjct: 3   ILVVDDDVHILQLVNIYLTKEGYQVLLAENAKQALALLEGNLPDLAVVDVMMP--GMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +     +P++ ++    L+     F +G DD V KP   +E+L R+AAI RR   
Sbjct: 61  TLTEYLTQDYDIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRRFDK 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            N    + G + +     +  +      LP +E  +L  L +   +   ++ I   ++G 
Sbjct: 121 KNQVTIQVGKLVIDRRSFEVVIGENTLILPLKEFELLALLASRPHQVFTRSYIMEQVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   +E  + +H+ ++R++L        + + R +GY ++
Sbjct: 180 YDYDGDEQTLNTHVKRIRERLNRYDTAVEITTVRGVGYKLE 220


>gi|297624289|ref|YP_003705723.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297165469|gb|ADI15180.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 236

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 103/224 (45%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++      G +G  +    +    E L+  A+E +  +   ++  G    
Sbjct: 16  LLLVEDDPGIRESLELGLGFEGFEV--VTAASASEGLRLFAQEAIDVVILDILLPGSDGY 73

Query: 62  ELPRIIRA----HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            +   IR       +V ++ ++   +++  +     G DD + KP    E++AR+ A++R
Sbjct: 74  RVLEAIRTPHNPKREVAVLFLTALDTIEDRVRGLRLGADDYLVKPFSLAELVARIEALWR 133

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           RL+          +R++ D R+    G    L  +E  +L+ L+ +R + V++  +   +
Sbjct: 134 RLQRPVTALCAADVRLYPDKREAWRGGVPLELAPKEFALLQVLLEHRARVVSREALMQRL 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V+ N +E H+S LR+ L +      + + R  GY +D
Sbjct: 194 WG---ERVDPNTLEVHVSSLRRALGDPP---MIRTVRGYGYLLD 231


>gi|302534835|ref|ZP_07287177.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302443730|gb|EFL15546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 225

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  V  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++A  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EASQAPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|120555970|ref|YP_960321.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325819|gb|ABM20134.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 223

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D A +  G      D G+ +E        ++L S+ R D   ++  L  G G + 
Sbjct: 3   ILLVEDDAALAQGLAGSLRDAGLLVEVAGEGRTADFLVSTERYDAVVLDLGLPDGNGTQW 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L   R       +P++ ++           F +G DD V KP    EIL R+ A+ RR  
Sbjct: 63  LAGWRER--GIDLPVLILTARERWSDKAAGFSAGADDYVTKPFETAEILFRLRALVRRSH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G I + +        G    L  +E R+L +L+    + V++T++   +Y 
Sbjct: 121 GHAHPVITVGDIALDTHAGHVTRSGMPVSLTAQEFRLLSHLIHAAPRIVSRTELSEHVYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NV++  +S+LR+KL    G   +++ R  GY ++
Sbjct: 181 G-DQEPDSNVIDVQVSRLRRKL----GAQAIETIRGQGYRMN 217


>gi|326792137|ref|YP_004309958.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326542901|gb|ADZ84760.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 224

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +  + +   +  +               +   DV  ++  L       L
Sbjct: 3   LLVIEDEVRLAEALVQILQKNKYAALAAYDGITGLDHALTGIYDVIILDIMLP--KLNGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R    Q P+I ++    +   +   D G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVLKQLREQKIQTPVILLTAKDEVSDRVKGLDHGADDYLTKPFATDELLARIRALGRRRG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + ++      I +     +     +   L  +E RILE+L+ +    V+K ++   I+
Sbjct: 121 ELICDDTLHFEDISLNLSTYELSCGSKTVRLGLKEFRILEFLIRHGQHIVSKEELLEKIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   E N VE +IS LRKKL +      + + R +GY +
Sbjct: 181 G-FDSEAEYNHVEVYISFLRKKLSHIHSKVGIQTVRGVGYRL 221


>gi|294668444|ref|ZP_06733544.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309597|gb|EFE50840.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 232

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +           +     + E    L +    D+  ++  L        
Sbjct: 11  ILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDT--DGF 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           EL + +R     P+I ++        +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 69  ELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQT 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +            +       QG   PL + E R+L  L+   G+  ++ ++ +A++G
Sbjct: 129 QPAAEAESAPVWHDDAPAYCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAMFG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +   + + + +HI  LR KLR      + + +   LGYS +
Sbjct: 189 G-NRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSFN 230


>gi|255523159|ref|ZP_05390131.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255513274|gb|EET89542.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 262

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G   +    +             D+  ++  +       
Sbjct: 33  ILLIDDEIELLKLMETVLKKEGFRRISKAANGTDGIKTCKIENPDIVVLDVMMPD--IDG 90

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++ + IR  S VP+I +S        +     G DD V KP   +E+  R+ A  RR  
Sbjct: 91  FDVCKRIREFSFVPIIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRNI 150

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L V   +   G I +     +    GE   L  +E  +L Y+  N  + + K  I
Sbjct: 151 YIKNELSVKEEKISFGDIVIDFQNGEVLKLGENIVLTPKEYHLLRYMAQNANQILTKQMI 210

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++   D    +N +  H+ KLR+KL  +    + + + + LGY +
Sbjct: 211 CNEVWD-DDYEGYDNTIMVHMRKLRQKLEKDPSNPEYIITVKGLGYKL 257


>gi|284993057|ref|YP_003411611.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066302|gb|ADB77240.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 220

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 13/222 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D A +          +G +              +S   D+  ++  L   G    E
Sbjct: 5   LIAEDEARIAAFVEKGLRANGFATAVVADGRTARAAAASGDFDLMILDIGLP--GMDGFE 62

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA    +P++ ++   S+Q T+   + G DD + KP    E+LARV    R    
Sbjct: 63  VLRALRADRVTIPVVILTARDSVQDTVAALEGGADDYMPKPFRFEELLARVR--LRLSGG 120

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +    R  +       L  RE  + E  + + G+ +A+ Q+ S ++
Sbjct: 121 RQTETTVLTCGDLSLDLRTRRAQAGSRTVALSAREFALAETFLRHPGQVLAREQLLSHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     NVV+ ++  LR+KL    G D +++ R +GY +
Sbjct: 181 G-YDFDPGSNVVDVYVRYLRRKL----GADRIETVRGMGYRL 217


>gi|167033875|ref|YP_001669106.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860363|gb|ABY98770.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 226

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 6/219 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D A+     +A     G+ ++  ++         +   D+  ++  L       L + 
Sbjct: 7   IEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIAGGYDLITLDRMLPEV--DGLTIV 64

Query: 65  RIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121
             +R+     P++ IS    +   +    +G DD + KP    E+ ARV  + RR  V  
Sbjct: 65  TTLRSLKIATPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPM 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  R +   +++     +         L   E ++LEYLM + G+ + +  IF  ++G +
Sbjct: 125 TQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 N+++ HI +LRKK+ +      + + R  GY+I
Sbjct: 184 HFDPGTNLIDVHIGRLRKKIDSPGQSPLIRTVRGSGYAI 222


>gi|24380274|ref|NP_722229.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans UA159]
 gi|290579753|ref|YP_003484145.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans NN2025]
 gi|24378286|gb|AAN59535.1|AE015017_1 response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans UA159]
 gi|6174678|dbj|BAA85986.1| gcrR [Streptococcus mutans]
 gi|254996652|dbj|BAH87253.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans NN2025]
          Length = 230

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +E   + +    L+ +  +D   I   L+       
Sbjct: 5   ILIIEDEKKLAKFVSLELQHEGYEVEV--TYDGRSGLERALEKDFDLILLDLMLPEMDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R ++      +I I+   S+   +   D G D  + KP    E+LARV AI+RR   
Sbjct: 63  EVIRRLQLEKTTYVIIITARDSIMDIVTGLDRGADGYIVKPFAIEELLARVRAIFRRQDI 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S N      +++    R     GE  PL +RE  +L  L+ N  + + + ++ +
Sbjct: 123 EKAKHSSKNDTTYRDLKLDVHNRAAIRNGETIPLTKREFDLLNALVENINQVMTREELLA 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++  +D+  E NVV+ +I  LR K+        + + R +GY I  N
Sbjct: 183 RVW-KYDQEAETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYIIREN 229


>gi|254251504|ref|ZP_04944822.1| two component transcriptional regulator [Burkholderia dolosa
           AUO158]
 gi|124894113|gb|EAY67993.1| two component transcriptional regulator [Burkholderia dolosa
           AUO158]
          Length = 269

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 29  ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLP--KMSGL 86

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 87  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 147 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 207 WG---EEVSNNAIEVYVHRLRKKIEPIG--VRISTVRGLGYCLE 245


>gi|325660770|ref|ZP_08149398.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085492|ref|ZP_08334577.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472844|gb|EGC76054.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330407730|gb|EGG87228.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 219

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD A +          DG  ++     E    ++ S R D+  ++  +   G    
Sbjct: 4   ILAVDDEAKILQIIRKALEKDGHIVQTVQDGEVVRQMELS-RYDLILLDVMMP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L R IR     P++ ++     +  +    SG DD + KP    E+ ARV A  RR L+
Sbjct: 61  TLCREIRETVDCPIVFLTAKTLEEDLMAGLGSGADDYICKPFGLGELRARVQAHLRRELR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     +  +   +    + +  PL + E +I EYL  + G+ +++ QI+ A++G 
Sbjct: 121 EKKQVFAVSGLHFYMQAKKVMAKDQKVPLTKSEYQICEYLALHHGQTLSREQIYEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   + + +  HI  +R KL  K+  +P+++   +GY   WN
Sbjct: 180 YEGESDASAITEHIKNIRAKL-IKVQAEPIETVWGMGYR--WN 219


>gi|304405338|ref|ZP_07386997.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345377|gb|EFM11212.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 234

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D   A       +++             + + D+  ++  L        
Sbjct: 4   ILVIEDDEKIADMLSAAIAKYDFAVQVVEDFRLVLECFLAVKPDLVLLDVNLP--KFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              R IRA S  P+I IS   S    +   ++G DD + KP     ++A++ +  RR   
Sbjct: 62  YWCRQIRAQSTCPIIFISARDSQMDQVMALENGADDYITKPFDIEIVIAKIRSQLRRAYG 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +       +  I ++ +      QG    L ++E  +LE LM   G+ V++ ++ 
Sbjct: 122 AYAAGQEQERTVTSAGIVLYPERFVVSCQGNSIELTQKEAALLEVLMLKEGRVVSRERLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++      +++N +  +I+++R+KL++    D +++ R  GY +
Sbjct: 182 DLMW-EDQHFIDDNTLNVYITRVRRKLKDIGIGDRIETVRGAGYRL 226


>gi|302871492|ref|YP_003840128.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574351|gb|ADL42142.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 234

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
            ++DD   + +         G ++  F S E        +  D+  ++  L        E
Sbjct: 7   YVVDDEKDILELVSEYLTQKGYAVRTFESGESFLGEFEKSEPDIVILDIMLPD--IDGYE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + IR +S VP+I +S        +   + G DD ++KP    E+ AR+  I RR+   
Sbjct: 65  ICKRIRKNSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRRVNKG 124

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +N  ET  I+V  + R+         L  +E      L+    K + ++ I   I+
Sbjct: 125 PIKQDNVIETFGIKVDFNQRNVFYNDTQIELSPKEFETFALLLKESTKVLKRSYILERIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G      +E +V+  I +LRKK+        + +   LGY I+
Sbjct: 185 GNP-ALYDERMVDDVIKRLRKKILQYNLPVEIKTMWGLGYKIE 226


>gi|300863556|ref|ZP_07108502.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300338423|emb|CBN53644.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 232

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 106/229 (46%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
           +L++D   +          +   ++   +  E  E+L+S   +  ++  +  L   G   
Sbjct: 4   LLVEDEPDLGKAIKRTLNQEKYIVDWAQNGNEAWEYLESQWTQYTLAIFDWLLP--GLSG 61

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL + +RA +  +P++ ++    ++  +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LELCQRLRAKNNHLPVLMLTARDRMEDKVAGLDAGADDYLVKPFGMAELLARLRALQRRS 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPE---VQGE--VFPLPRRERRILEYLMANRGKRVAKTQI 173
            ++   +     + +    R      ++GE  +  L  +E ++LEYLM +  + V   +I
Sbjct: 122 PQLQPEQLTVVNLTLDYGTRTVYHFNLKGEKQIISLTNKEFQLLEYLMRHPNQIVTSDRI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            + I+   D     NVV + +  LR+KL +     + + +   +GY ++
Sbjct: 182 RNQIW-EADADAFSNVVAAQMRLLRRKLESVGCAANLIGTVHGVGYRLN 229


>gi|291522104|emb|CBK80397.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 237

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 14/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +      +   +G  +L+ ++ LE  + L  +    V  I   ++      
Sbjct: 6   ILIVDDDREIVRVIAKILELEGYRTLKAYDGLEALDMLVGNV---VHLIMIDIMMPKMNG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L     IR  + +P+I +S        +     G DD ++KP + +E++ARV A  RR  
Sbjct: 63  LAAVMKIRETNNIPIIILSAKTEETDKVLGLSMGADDYISKPFNTQEMIARVKAQLRRYM 122

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +   +    G + +    ++  V GE   L   E +I+E LM+N G+     +
Sbjct: 123 RLGAMNSESMQDSIRIGDLYLDKHAKELNVNGESVHLTATEYKIMELLMSNPGRVFPAEE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           I+  ++     +VE N V  HI ++R+K+  N      +     +GY I+ +
Sbjct: 183 IYERVWQEPAYSVE-NTVMVHIRRIREKIEINPKQPKYLKVVWGIGYKIEKD 233


>gi|317051237|ref|YP_004112353.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316946321|gb|ADU65797.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 235

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G+ +      E         R DV  ++  L   G   +
Sbjct: 9   ILIIEDDRRLAQLISEYLQSHGLVVRVETDGERGLREALRHRYDVILLDLGLP--GRDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R HS +P++  +        +   + G DD + KP   RE+LAR+ A  RR++ 
Sbjct: 67  SVCQQLRGHSDIPILITTARGEEADKVLGLEVGADDYIAKPYSPRELLARIRAFTRRMRG 126

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +   + G + +  +     +      L   E  +L  L +N G+ +++ ++    
Sbjct: 127 QVGPRHAVLQVGSLCLEPEALQATLDSSRLDLTSYEFALLYALASNAGQVLSRERLMELA 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            G  D+A +   V+ HIS+LR+KL +       + + R  GY  
Sbjct: 187 RGSSDDAFD-RSVDVHISRLRQKLGDNSRPVKMIRTVRGAGYQF 229


>gi|264680754|ref|YP_003280664.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299529368|ref|ZP_07042806.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262211270|gb|ACY35368.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298722617|gb|EFI63536.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 231

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 19/229 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G +++   S+       S+ R D   ++  L        
Sbjct: 3   ILVVEDNEGIAAGLRTNLMQRGYAVDVCASVAEAWHALSAERFDAVLLDLGLPD--GDGS 60

Query: 62  ELPRIIRAHS-----------QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
           E+ R +R  +             P++ ++    +Q  +   + G DD + KP    E+ A
Sbjct: 61  EVVRRLRLQTGRPGVPQLPDPATPVLILTARDQVQDRVAGLNLGADDYLVKPFDMDELEA 120

Query: 111 RVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           R+ A+ RR    ++       + V    R     G+   +  RE  +L  L+  RG+ ++
Sbjct: 121 RLRAMMRRAAGQASPVIRHADLEVDPAARTIRQAGQKVEVSPREFAVLWALLLARGRVLS 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + QI   +Y   D  VE N VE ++  LRKKL  K+    + + R +GY
Sbjct: 181 RPQIEEHLYSWGD-TVESNAVEVYVHHLRKKLGQKI----IVTMRGVGY 224


>gi|259046372|ref|ZP_05736773.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259037009|gb|EEW38264.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 220

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 102/220 (46%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G      + G ++  F + +  E L+   RE V  I   ++   +   
Sbjct: 5   LLIVEDEEAIREGVREFLSEQGFTV--FEACDGVEALEVFNRESVDLILLDIMMPRKNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R  S VP++ ++     +T +  F+  VD  + KP     +  R+ A+ +R   
Sbjct: 63  EVLEEVRQKSNVPILMLTALQDEETQVKSFELLVDGYIQKPFSLMVLYKRIEALLKRHYG 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                      V     +  V  ++  +  +E  IL+ L+ + G+ ++++QI   ++   
Sbjct: 123 EVETWSYQDTSVNFTRFEAYVNNQLVEVTAKELSILKLLVKHEGQALSRSQILDHVWSNH 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   + VV+ +I +LRKKL+     D + + + +GY ++
Sbjct: 183 EDPPFDRVVDVYIKQLRKKLK----LDCIVTIKNVGYKLE 218


>gi|254426949|ref|ZP_05040656.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196193118|gb|EDX88077.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 220

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 97/220 (44%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D AL+ DG  A     G ++              S   D   ++  L  + +   
Sbjct: 3   ILLIEDDALLGDGIQAGLQAMGFTVAWVTRAREGLAAWKSVEFDALVLDLGLPDQ-DGGQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L +   A    P++ ++   ++Q  +D    G DD + KP    E+ AR+ A+ RR + 
Sbjct: 62  ALCQWRDAGLTAPVLILTARDAVQDRIDGLQRGADDYLVKPFDLGELAARLQALLRRSRG 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E G +RV    +   +  +   L RRE  +L  L+ +RG+ +   Q+   +YG 
Sbjct: 122 QASPLIEHGRVRVDPFRQQVWLADQEVELQRREMALLLALLQSRGRLLTPDQLADRVYGW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  VE N +  HI  LR+KL    G   V++ R  GY +
Sbjct: 182 VD-GVESNALAVHIHNLRRKL----GSGIVETVRGGGYRL 216


>gi|85710771|ref|ZP_01041832.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
 gi|85695175|gb|EAQ33112.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
          Length = 241

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +   +  E  + L +     +  ++  L   GE  L
Sbjct: 8   ILVVDDDARLRSLLERYLNEQGFQVRVASDAEQMDRLLTRENYHLLVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R  +  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICKRLRQTNNTIPVIMLTAKGDEVDRIIGLELGADDYLAKPFNPRELLARIRAVLRRRG 125

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V         +     G  R+    R+        PL   E  +L+ L+++  + +++ +
Sbjct: 126 VEAPGAPSQDDQEITFGTYRLNLGTREMFDGDTPMPLTSGEFAVLKALVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLETDPAKPRYIQTVWGLGYVF 233


>gi|323495121|ref|ZP_08100207.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
 gi|323310622|gb|EGA63800.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
          Length = 231

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N+ E    L S    D+  I   ++      +
Sbjct: 4   ILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLELLS---NDIDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R + + P++ ++        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQS 120

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S N          E   I+++   ++   QGE+  L   E  +L + + N G+ + K  +
Sbjct: 121 SANGKQGKNSDCIEYQDIQIYPGKQEAYCQGELMVLTTTEFALLSHFVQNPGQTLTKEAL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              + G    A +   ++ H+S LRKKL   K G   + + R  GY +
Sbjct: 181 SLDVLGKRLAAFD-RAIDMHVSNLRKKLPERKDGKSRIKTLRGRGYLL 227


>gi|311033146|ref|ZP_07711236.1| two-component response regulator; MrsR2 protein [Bacillus sp.
           m3-13]
          Length = 236

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +G S         + W + +    ++  ++  L     + 
Sbjct: 6   ILIVDDEKDLCTLIKTALIKEGFSEIRIAGTVNQGWNEFNDFHPNIVILDVMLPD--GEG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +L + IR  S+VP++ +S        +     G DD ++KP   +E+  RV A  RR  
Sbjct: 64  YDLCKKIREISRVPVLFLSAKTEEVDKILGLAIGGDDYISKPFSPKEVAFRVKAQLRRAG 123

Query: 121 VS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            S                G   +  +  +    G++  L  +E  ++   M N    ++K
Sbjct: 124 YSTVGASTSNKNEKVISVGSFSINHEETEVMKDGKMLELTAKEVGLMACFMRNPNHIISK 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             +F+ ++G  +    +N +  HI +LR+K+ +       + + + LGY  
Sbjct: 184 ETLFNKVWGE-EFYGADNTLTVHIRRLREKIEDTPSKPTYIITVKGLGYRF 233


>gi|291518383|emb|CBK73604.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 235

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 13/232 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   +          +G+++    N  E  + +     +D+  I   ++      
Sbjct: 4   ILICDDEKDIISALRIYLESEGMNVTAASNGREAVDIMAGPNGKDMQLILMDVMMPEMDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +     IR  S VP+I ++        +     G DD V KP +  E++ARV +  RR  
Sbjct: 64  IAAMAEIRKTSNVPIIMLTAKSEDADKVIGLTVGADDYVTKPFNPVELMARVKSQLRRYT 123

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                     V+ N    G I +    ++  + G    L   E  IL+ LM ++G+ ++ 
Sbjct: 124 MLGSQNNDNIVNTNTISIGGIELNDKSKEVTLDGNPVSLTPLEYDILKLLMTHKGEVLSP 183

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             I+ +++       E   V  HI  LR+KL  +      + +    GY  +
Sbjct: 184 RDIYESVWNETGLGAES-TVAVHIRHLREKLEYDSANPRHLKAVWGHGYKFE 234


>gi|196250488|ref|ZP_03149179.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|196209978|gb|EDY04746.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 220

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 11/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L +D   + +  + L    G+  ++     E       +   DV  ++  L       +
Sbjct: 4   LLAEDDLHLGELIVHLLKKKGIDHIDWVQEGEDAYDYAMAEFYDVVVLDWMLPN--GDGV 61

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R +R +     ++ ++   ++Q  +   ++G DD + KP    E++AR+ A+ RR  
Sbjct: 62  DICRRLRQNGYTGAILILTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRTF 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +           +           E   L  RE ++L+ L+ N+G+ V +  I   ++
Sbjct: 122 VPLQEETVTFHGFTLNRTSHTLHRNNEEISLTPREFQLLDLLVQNQGQVVPRETILDRVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D  V    +++ I  LRKKL++    D + + R +GY ID
Sbjct: 182 G-WDADVSMKTIDATIKLLRKKLKD----DVIQTVRGVGYKID 219


>gi|49477046|ref|YP_035262.1| two-component response regulator; MrsR2 protein [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52144318|ref|YP_082509.1| response regulator [Bacillus cereus E33L]
 gi|49328602|gb|AAT59248.1| probable two-component response regulator; probable MrsR2 protein
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51977787|gb|AAU19337.1| response regulator [Bacillus cereus E33L]
          Length = 240

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 95/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +   A+   +G   +    + +    +    + D+  ++  L       
Sbjct: 13  ILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPD--LDG 70

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             +   IR  + VP+  +S        +     G DD + KP   +E+  ++ A +RR +
Sbjct: 71  YSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               + N  + G I +          G +  L  +E  IL +L+ N  +  +K +++ A+
Sbjct: 131 YKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARLYEAV 190

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G       +N++  H+  LR+K+ +     + + + R LGY ++
Sbjct: 191 WGET-YLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLN 234


>gi|26251291|ref|NP_757331.1| DNA-binding response regulator CreB [Escherichia coli CFT073]
 gi|91214116|ref|YP_544102.1| DNA-binding response regulator CreB [Escherichia coli UTI89]
 gi|110644837|ref|YP_672567.1| DNA-binding response regulator CreB [Escherichia coli 536]
 gi|117626758|ref|YP_860081.1| DNA-binding response regulator CreB [Escherichia coli APEC O1]
 gi|191173173|ref|ZP_03034705.1| transcriptional regulatory protein CreB [Escherichia coli F11]
 gi|215489711|ref|YP_002332142.1| DNA-binding response regulator CreB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218561631|ref|YP_002394544.1| DNA-binding response regulator CreB [Escherichia coli S88]
 gi|218692788|ref|YP_002401000.1| DNA-binding response regulator CreB [Escherichia coli ED1a]
 gi|227885110|ref|ZP_04002915.1| DNA-binding response regulator [Escherichia coli 83972]
 gi|237704134|ref|ZP_04534615.1| transcriptional regulatory protein CreB [Escherichia sp. 3_2_53FAA]
 gi|300939389|ref|ZP_07154056.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300980841|ref|ZP_07175222.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300983983|ref|ZP_07176834.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301048371|ref|ZP_07195400.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|306815404|ref|ZP_07449553.1| DNA-binding response regulator CreB [Escherichia coli NC101]
 gi|312966116|ref|ZP_07780342.1| transcriptional regulatory protein creB [Escherichia coli 2362-75]
 gi|331661033|ref|ZP_08361965.1| transcriptional regulatory protein CreB [Escherichia coli TA206]
 gi|26111724|gb|AAN83905.1|AE016772_83 Transcriptional Regulatory protein creB [Escherichia coli CFT073]
 gi|91075690|gb|ABE10571.1| transcriptional regulatory protein CreB [Escherichia coli UTI89]
 gi|110346429|gb|ABG72666.1| transcriptional regulatory protein CreB [Escherichia coli 536]
 gi|115515882|gb|ABJ03957.1| catabolic regulation response regulator CreB [Escherichia coli APEC
           O1]
 gi|190906558|gb|EDV66165.1| transcriptional regulatory protein CreB [Escherichia coli F11]
 gi|215267783|emb|CAS12246.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli O127:H6 str. E2348/69]
 gi|218368400|emb|CAR06220.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli S88]
 gi|218430352|emb|CAR11222.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli ED1a]
 gi|222036141|emb|CAP78886.1| Transcriptional regulatory protein creB [Escherichia coli LF82]
 gi|226902046|gb|EEH88305.1| transcriptional regulatory protein CreB [Escherichia sp. 3_2_53FAA]
 gi|227837939|gb|EEJ48405.1| DNA-binding response regulator [Escherichia coli 83972]
 gi|294493345|gb|ADE92101.1| transcriptional regulatory protein CreB [Escherichia coli IHE3034]
 gi|300299788|gb|EFJ56173.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300306817|gb|EFJ61337.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300409158|gb|EFJ92696.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300455735|gb|EFK19228.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|305851066|gb|EFM51521.1| DNA-binding response regulator CreB [Escherichia coli NC101]
 gi|307556633|gb|ADN49408.1| transcriptional regulatory protein CreB [Escherichia coli ABU
           83972]
 gi|307629570|gb|ADN73874.1| DNA-binding response regulator CreB [Escherichia coli UM146]
 gi|312289359|gb|EFR17253.1| transcriptional regulatory protein creB [Escherichia coli 2362-75]
 gi|312949030|gb|ADR29857.1| DNA-binding response regulator CreB [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315284971|gb|EFU44416.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315298370|gb|EFU57625.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320195353|gb|EFW69981.1| Two-component response regulator CreB [Escherichia coli WV_060327]
 gi|323190322|gb|EFZ75598.1| transcriptional regulatory protein creB [Escherichia coli RN587/1]
 gi|323950513|gb|EGB46391.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323955193|gb|EGB50966.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|324007720|gb|EGB76939.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324012409|gb|EGB81628.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|331052075|gb|EGI24114.1| transcriptional regulatory protein CreB [Escherichia coli TA206]
          Length = 229

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G  +E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFDVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|282900388|ref|ZP_06308338.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194701|gb|EFA69648.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Cylindrospermopsis raciborskii CS-505]
          Length = 268

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 102/227 (44%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D    +   +G  ++   + +    L  +   D+  ++  L  K    L
Sbjct: 35  ILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEK--TGL 92

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     +P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 93  EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V +     +   G + +  + +    QG +  L  +E ++L+Y M N  + +   QI   
Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   ++  E NV+ + I  LR+K+        + +    GY   ++
Sbjct: 213 LW-KGEKPPESNVIAALIRLLRRKIELGGESMLIHTVYGKGYRFSYH 258


>gi|260587331|ref|ZP_05853244.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|260542198|gb|EEX22767.1| regulatory protein VanR [Blautia hansenii DSM 20583]
          Length = 235

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G +     S    + L       +  ++  L   G    
Sbjct: 15  ILIVEDDTDINNLLFTALKKQGYTATQAFSGTEAKMLLKMENFALILLDLMLP--GISGE 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+   I+      +I ++   +L   ++   +G DD + KP   +E+LARV    RR   
Sbjct: 73  EVLEFIKEQGNSAVIILTAKDTLDDKVNLLIAGADDYITKPFEIQEVLARVQVQLRRSVQ 132

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + ++N      + +  +    +V+G++   + ++E  ILE L+ +  +  +K  IF   +
Sbjct: 133 EGNSNVLSHKQMVLDREKFQIKVEGQLMGKITKQEFSILELLLKHPKQVFSKEDIFEYAW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  E   ++ HIS +RKK++     + +++   +GY +
Sbjct: 193 EEP-YMGETKTLDVHISNIRKKIKEVTKEEYIETVWGIGYRL 233


>gi|123443580|ref|YP_001007553.1| DNA-binding response regulator CreB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090541|emb|CAL13410.1| putative response regulator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 232

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  I     +G +L  F+  E      ++    ++ ++  L       
Sbjct: 4   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALANGPPALAIVDVGLPD--ING 61

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +L R I A   ++P++ ++        +   + G DD + KP   RE+ ARV  + RRL
Sbjct: 62  FDLCRRILAQVPELPVVFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTVLRRL 121

Query: 120 KVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + S + A      + G   +   G       +V  L R E  +L+ L+    +  ++ Q+
Sbjct: 122 QKSQSLATSATLHQFGNFTLDEAGARVTYHQQVLWLTRYEYLLLKTLLLAPDRVFSRQQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++   +E+ ++  V++HI  LR KLR       P+ + R LGYS+
Sbjct: 182 MDIVWAQAEES-QDRTVDTHIKTLRSKLRMTYDEESPIRTHRGLGYSL 228


>gi|294146553|ref|YP_003559219.1| two-component system response regulator [Sphingobium japonicum
           UT26S]
 gi|292676970|dbj|BAI98487.1| two-component system response regulator [Sphingobium japonicum
           UT26S]
          Length = 236

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++   +  FG  G+        E           D+  ++  +       L
Sbjct: 5   ILIVDDDPHIRQLLVFAFGKAGLETIEAADGEAALAAVERHAPDLVILDINMPR--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RAH  VP+  +S        +   + G DD V KP   RE++AR  AI RR   
Sbjct: 63  EVCRRLRAHDDVPIFFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVVARSMAILRRASA 122

Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                E       G + + ++       G    L   E  IL  L+A   +  ++ QI  
Sbjct: 123 RPPAVEAIGAIRHGRLSLDTESWSAHWGGAEVSLTVTEFTILRTLLAMPSRIFSRDQIID 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              G    A+ +  V+SHI  LR+K  +  GFD ++++  +GY +
Sbjct: 183 RFRGPG-FALTDRTVDSHIRNLRRKFADVGGFDIIETRPGIGYRL 226


>gi|283788574|ref|YP_003368439.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282952028|emb|CBG91757.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 229

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  I +   +G ++E F               DV+ ++  L        EL
Sbjct: 8   LVEDEQGIADTLIYMLQQEGFTVEAFERGLPALERSRHQCPDVAILDVGLPD--ISGFEL 65

Query: 64  PRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R +   H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRRLLERHPSLPVLFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +    TG   +     +    G    L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 ATPSPVVRTGHFELNELSAEVSWFGTPLSLTRYEFLLLKTLLLSPGRVYSRQQLMESVWA 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTFD-RTVDTHIKTLRAKLRAVNPDLSPINTHRGMGYSL 226


>gi|261254101|ref|ZP_05946674.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
 gi|260937492|gb|EEX93481.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
          Length = 230

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N+ E    L +  + D+  ++  +       +
Sbjct: 4   ILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLALLND-QIDLILLDVMMP--KLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R   + P++ ++        +   + G DD + KP   RE++AR+ AI RR + 
Sbjct: 61  ETLKRLRETWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELMARIRAILRRTQS 120

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           SNN+        E   I+ F   ++   QGE+  L   E  +L + + + G  + K  + 
Sbjct: 121 SNNKAAKNSDCIEYQDIQAFPGKQEAYCQGELIDLTTTEFALLAHFIQHPGDTLTKEALS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 LDVLGKRLAAFD-RAIDMHVSNLRKKLPERADGKSRIKTIRGRGYLL 226


>gi|261253108|ref|ZP_05945681.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
 gi|260936499|gb|EEX92488.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
          Length = 219

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +      G   E         +  +S   DV  ++  L       L
Sbjct: 3   ILVVEDDPRLGEQIVETLEKTGWVPELSQDGIDALYRATSEEWDVIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E+ AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGNLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+  K     + + R LGY ++
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKIAPK----VIKTVRGLGYQLN 217


>gi|259500533|ref|ZP_05743435.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|302191223|ref|ZP_07267477.1| DNA-binding response regulator [Lactobacillus iners AB-1]
 gi|309805234|ref|ZP_07699286.1| response regulator ArlR [Lactobacillus iners LactinV 09V1-c]
 gi|309808122|ref|ZP_07702036.1| response regulator ArlR [Lactobacillus iners LactinV 01V1-a]
 gi|309810189|ref|ZP_07704034.1| response regulator ArlR [Lactobacillus iners SPIN 2503V10-D]
 gi|312871771|ref|ZP_07731859.1| response regulator ArlR [Lactobacillus iners LEAF 3008A-a]
 gi|312872980|ref|ZP_07733040.1| response regulator ArlR [Lactobacillus iners LEAF 2062A-h1]
 gi|312874189|ref|ZP_07734223.1| response regulator ArlR [Lactobacillus iners LEAF 2052A-d]
 gi|312875576|ref|ZP_07735577.1| response regulator ArlR [Lactobacillus iners LEAF 2053A-b]
 gi|315653632|ref|ZP_07906552.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|325912125|ref|ZP_08174523.1| response regulator ArlR [Lactobacillus iners UPII 143-D]
 gi|325912567|ref|ZP_08174950.1| response regulator ArlR [Lactobacillus iners UPII 60-B]
 gi|329920102|ref|ZP_08276933.1| response regulator ArlR [Lactobacillus iners SPIN 1401G]
 gi|259167917|gb|EEW52412.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|308165468|gb|EFO67699.1| response regulator ArlR [Lactobacillus iners LactinV 09V1-c]
 gi|308168634|gb|EFO70738.1| response regulator ArlR [Lactobacillus iners LactinV 01V1-a]
 gi|308169461|gb|EFO71509.1| response regulator ArlR [Lactobacillus iners SPIN 2503V10-D]
 gi|311088830|gb|EFQ47273.1| response regulator ArlR [Lactobacillus iners LEAF 2053A-b]
 gi|311090259|gb|EFQ48669.1| response regulator ArlR [Lactobacillus iners LEAF 2052A-d]
 gi|311091502|gb|EFQ49886.1| response regulator ArlR [Lactobacillus iners LEAF 2062A-h1]
 gi|311092713|gb|EFQ51069.1| response regulator ArlR [Lactobacillus iners LEAF 3008A-a]
 gi|315488994|gb|EFU78636.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|325476075|gb|EGC79243.1| response regulator ArlR [Lactobacillus iners UPII 143-D]
 gi|325477988|gb|EGC81117.1| response regulator ArlR [Lactobacillus iners UPII 60-B]
 gi|328936556|gb|EGG33000.1| response regulator ArlR [Lactobacillus iners SPIN 1401G]
          Length = 241

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +       ++      L      D   ++  L       L
Sbjct: 4   ILIIEDEKNLARFVELELQHEKYDTTVESNGRKGLDLALRDNYDAILLDLMLPD--LNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I ++   S+   +   D G DD + KP    E+LAR+ A+ RR+++
Sbjct: 62  EIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                              + + +  R      +   L +RE  +L  L+ ++   V + 
Sbjct: 122 EKRASGEAAGVQRVIRFNDLTIETANRIVHRGDKTVDLTKREYNLLMTLIEHKNNVVTRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Q+   I+G  D  +E NVVE ++  LR K+        + + R  GY +
Sbjct: 182 QLLKKIWG-SDSKIETNVVEVYVRYLRNKIDVPGRSSYIKTVRGTGYMV 229


>gi|33860694|ref|NP_892255.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|123965397|ref|YP_001010478.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|33633636|emb|CAE18593.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|123199763|gb|ABM71371.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +    + + +E L+     D   +   ++       
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKV--VTACDGKEALKLFKDYDPDLVVLDVMMPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++       I++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQLPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGY 234


>gi|162420052|ref|YP_001608150.1| DNA-binding response regulator CreB [Yersinia pestis Angola]
 gi|162352867|gb|ABX86815.1| transcriptional regulatory protein CreB [Yersinia pestis Angola]
          Length = 232

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  I     +G +L  F+  E      SS    ++ ++  L       
Sbjct: 4   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPALAIVDVGLPD--ING 61

Query: 61  LELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +L R  + A   +P+I ++        +   + G DD + KP   RE+ ARV  I RRL
Sbjct: 62  FDLCRRMLAAAPDLPVIFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTILRRL 121

Query: 120 K------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +      V++   + G   +   G       ++  L R E  +L+ L+    +  ++ Q+
Sbjct: 122 QKSHLLAVTSTSYQFGHFSLDEAGARVTYHQQILGLIRYEYLLLKTLLLAPERIFSRQQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++   +E+ ++  V++HI  LR KLR     D P+ + R LGYS+
Sbjct: 182 MDIVWAQAEES-QDRTVDTHIKTLRSKLRTVYAEDSPIRTHRGLGYSL 228


>gi|330996298|ref|ZP_08320183.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573490|gb|EGG55097.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila
           YIT 11841]
          Length = 230

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +         + G  ++  +       +      D+  ++  +       L
Sbjct: 9   ILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQEGVFDLLVLDVIMP--KMDGL 66

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           E+ R  R       P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 67  EVCRQFRLKEGYHTPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRG 126

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K   +R      + +  D R       V  L  +E R+LEY M ++G  +++  +   ++
Sbjct: 127 KERPDRQLWCHDLVLDCDTRRARRGDTVIELTVKEYRLLEYFMTHQGVALSRLTLLKDVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +     NVV+ +++ LR K+  +     + +   +GY +
Sbjct: 187 DK-NFDTNTNVVDVYVNYLRNKIDREFEVKLIRTIVGMGYIM 227


>gi|323493870|ref|ZP_08098987.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
 gi|323311811|gb|EGA64958.1| transcriptional regulator [Vibrio brasiliensis LMG 20546]
          Length = 219

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 103/222 (46%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E F+S    +  Q   + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECFHSETIADVAQYWDKADLVILDRQLPD-GDSV- 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E     +    VP+I ++   +++  +   D+G +D + KP    E+ AR+ A  R  + 
Sbjct: 61  EHLVEWKKLKDVPVILLTALVTVKDKVMGLDAGANDYLTKPFAEAELFARIRAQLRAPEG 120

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +++  T  + +    R+   + E   L R E  +L +L +N G+   + ++   ++
Sbjct: 121 DAFDDSKVTTEHLVIDKATREVFYKEESITLTRTEFDLLLFLASNLGRVFTRDELLDHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 G-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 217


>gi|262163484|ref|ZP_06031230.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262028051|gb|EEY46710.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
          Length = 224

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +      ++      S+  D+  ++  L       L
Sbjct: 3   ILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHV--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + IRA    V ++ +S    ++  +    +G DD + KP H  E+LAR+ A+ RR  
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++N+     + +           +   L  +E  ILE  +   G   ++ ++ + ++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERVLANVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G+  + +  NVV+ ++ +LRKK+        + +KR +GY +
Sbjct: 181 GIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221


>gi|91782863|ref|YP_558069.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91686817|gb|ABE30017.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 227

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 94/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++        +    +   D+  ++  L   G+   
Sbjct: 3   ILIVEDEIKTGTYLRKGLTEAGFIVDWVADGVTGQHRALTEDYDLIILDVMLP--GQDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R      ++ ++    +   +   + G DD + KP    E+LARV +I RR + 
Sbjct: 61  TVLKNLRRTHSTSVLLLTARDEVDDKVRGLEMGGDDYLGKPFDFAELLARVRSILRRGQP 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + +    R    QG+   L  +E  +L  LM  +G+ + ++ I S ++ +
Sbjct: 121 RDAASLQVSNLVLDLTRRKATRQGDTILLTAKEFALLWLLMRRQGEILPRSTIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ +      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIRRLRAKVDDNYEPRLIHTVRGMGYVLE 220


>gi|294010703|ref|YP_003544163.1| two-component system response regulator CusR [Sphingobium japonicum
           UT26S]
 gi|292674033|dbj|BAI95551.1| two-component system response regulator CusR [Sphingobium japonicum
           UT26S]
          Length = 228

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A          G+ G +++  ++     +L S        ++  +       +
Sbjct: 5   ILVVEDDAATAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGAIILDRMMPA--MDGM 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA   + P+I +S   + +  ++   SG DD + KP    E++ARV  + RR  
Sbjct: 63  AMLKALRAAEIETPVIILSALGTPEDRVEGLTSGADDYLAKPFAFAELMARVQLLLRRGG 122

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + +    R  +       L  RE R+LEY + +  + V +T +   +
Sbjct: 123 GGGGVVTHLRHADLEMDLLSRRVKRGSRSVDLQPREFRLLEYFLRHPDQVVTRTMLLEGV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +      NV++ H+S+LR+KL +      + + R +GY +
Sbjct: 183 WD-YHFDPGTNVIDVHVSRLRRKLDDGGDRPLLHTVRGMGYRL 224


>gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 239

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +   +   N+      L      D+  ++  +   G    E
Sbjct: 6   LIVDDDPTLLRFLQDFLRAEAFEVLAANNGHEALKLAYQEHPDLVVLDVMMP--GMDGWE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +   S +P+I ++   S Q  L  F  GVDD + KP    E+ AR+ AI  R + S
Sbjct: 64  VCSRLHELSDIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIRAILARAQRS 123

Query: 123 -----NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N+   G   +  D R+    + ++ PL   E R+LEYL  N+G+ V++ ++   
Sbjct: 124 LPAQRKNQITFGEFIMDLDKRELWRGREQMIPLTPTEFRLLEYLARNKGRAVSEQELSEQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G++  + + + V  +I  LR+K+  +      + + R  GY +
Sbjct: 184 VWGVYLSS-DRSAVRRYIWLLRQKIESDPTHPRWIRTVRGYGYRL 227


>gi|297203139|ref|ZP_06920536.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297148318|gb|EFH28940.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 262

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +++DD   + D    +   +G      NS E      +  R D+  ++  L    G  V
Sbjct: 39  LLVVDDDPPIADLVATVARYEGWEAVTANSGEEALSRAAEFRPDIVVLDLMLPDLDGFGV 98

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L+  R+ R+ + VP++ ++   ++   +     G DD + KP    E++AR+  + RR  
Sbjct: 99  LD--RLRRSGTMVPVVFLTARDAVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 156

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +      + +  D R+     ++  L   E  +L YLM      + K QI   +
Sbjct: 157 GPGFQRSVLRVADLTMDEDTREVRRGDKLLTLTPTEYEVLRYLMRKSPTVLTKAQILDHV 216

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +      NVVE  +S+LR+KL +  G   + + R  GY +
Sbjct: 217 W-EYGFGGRSNVVELVVSRLRRKLDD-TGEPLIHTVRGFGYVV 257


>gi|148977229|ref|ZP_01813856.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3]
 gi|145963511|gb|EDK28774.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3]
          Length = 229

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G ++   N       L++   E D+  ++  +       
Sbjct: 4   ILLIDDDTELTSLLKDILSFEGFTVSEANDGYA--GLEAINDEIDLILLDVMMPR--LNG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  + +R H + P++ ++        +   + G DD + KP   RE+LAR+ AI RR +
Sbjct: 60  METLKKLREHWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQ 119

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +N      +R +   I VF   ++    GE+  L   E  +L +L+ N G+ + K  + 
Sbjct: 120 TTNTPKAASDRVQYQDIEVFPGKQEAYCNGEIIDLTTTEFALLSHLIQNPGQVITKEALS 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             + G    A +   ++ HIS LRKK+     G   + + R  GY +
Sbjct: 180 LDVLGKRLAAFD-RAIDMHISNLRKKIPERSDGKSRIKTLRGRGYLL 225


>gi|126659073|ref|ZP_01730213.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|172035214|ref|YP_001801715.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|126619601|gb|EAZ90330.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|171696668|gb|ACB49649.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 246

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 93/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++D         G  ++        + L    + D+  ++  L        
Sbjct: 4   ILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     + +P++ +S     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TVCQRLRRDDRTADIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLRR 121

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +     +   L   E  +L  L+   G+ V+ ++
Sbjct: 122 TDRIPQAAKHSEILNYGPLTLIPERFEAIWFEDTVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILKEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLE 230


>gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 245

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   +         D    +    N LE  +  +     DV  ++  +       
Sbjct: 21  ILIADDDPSIAALIQVTLKDPRYEIIAVANGLEALKAFEKQ-PFDVVILDVMMPYV--DG 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            E    IRA S VP++ ++     +  +  F+ G DD + KP    E++ARV +I RR  
Sbjct: 78  FEACERIRAQSDVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILRRVE 137

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +      G + +        V+G    L   E  +L +L AN G+   +  +F 
Sbjct: 138 GYSARRAPPVVRVGELEIDEPRHRVSVRGSDVNLTPMEFELLYFLAANAGQVFDRETLFR 197

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++G ++   E N+V+  + +LR+K+         + + R +GY +
Sbjct: 198 EVWG-YEYVGETNLVDVCVRRLREKVELIPSRPKIILTVRGVGYKL 242


>gi|295090647|emb|CBK76754.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 247

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 91/237 (38%), Gaps = 21/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++ G        G  +  F + +  E L+   +E++      ++      +
Sbjct: 12  ILIVEDDREIRQGIEIFLRGQGYRV--FQAADGIEGLRVLEKEEILLAIVDIMMPRMDGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR   
Sbjct: 70  TMVIKLREQYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRR 129

Query: 120 --------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                         K   N    G + +  D  +  V G    +   E +IL  LM N G
Sbjct: 130 FMKLLEEKEAGGQEKQDKNVYRIGGLELNEDTVELFVDGSPVKVTPMEFKILLLLMKNPG 189

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              +  +I+  ++   + AV  + V  H+  +R+K+  N      +     +GY I+
Sbjct: 190 HVFSAEEIYERVWN--ERAVNTDTVMVHVRNIREKIEINPRNPKYLKVVWGVGYKIE 244


>gi|225024963|ref|ZP_03714155.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC
           23834]
 gi|224942294|gb|EEG23503.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC
           23834]
          Length = 221

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++ D       D G +++  N+         S   D+  ++  L   G+  L
Sbjct: 3   ILLIEDDTMIADAVAGSLKDSGYAVDWINNGRTAVTAFGSQSYDLILLDLGLP--GQDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +R + +  P++ ++    L + L   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLQQLRGSGNTTPVLILTARDDLHSRLSGLDGGADDYLIKPFDMAELQARIRAVLRRQH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + +N     G + +       E+ G  E   L  +E  ILE L+   G  ++++ +   I
Sbjct: 121 QRANPLLGNGSLTLNPAAHQVEIVGQSEPVALSNKEFAILEALLQRPGTILSRSSLEDKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG + E VE N ++  I  LRKK+    G + + + R +G+ +
Sbjct: 181 YG-WGEEVESNAIDYLIHALRKKI----GKEHIKNIRGVGWMV 218


>gi|297582644|ref|YP_003698424.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141101|gb|ADH97858.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 228

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D         G  +   +  E      +    D+  ++  +        
Sbjct: 4   ILIVDDETRMLDLVALYVAPYGHRVLKESDGEAAVNRVADEPVDLVILDVMMP--KMNGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR+ S VP+I ++     +  +     G DD V KP    E++ARV A+ RR K 
Sbjct: 62  EVCQDIRSFSDVPIIMLTARDGKEDVVKGLRYGADDYVTKPFDEGELMARVDALLRRTKR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +  A  G +      R    +GE   L  +E   +   + N G+  ++ +I    +GL 
Sbjct: 122 QDEAA-CGGLVWNGRERALSFEGEAIHLTPKEFDTIGLFLRNPGRAFSREEIIETAWGLG 180

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221
               E   V++HI  +R+K++       D + +    GY  +
Sbjct: 181 -SGTEGRTVDTHIRNMREKIKKSGFPVEDHLKTVWGKGYKWE 221


>gi|282866274|ref|ZP_06275320.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558860|gb|EFB64416.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 225

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  V  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +R     VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRGEGLAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|224539062|ref|ZP_03679601.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519307|gb|EEF88412.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 243

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 87/224 (38%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V         ++G              L      D+   +  L        
Sbjct: 19  ILIIEDEPRVASLLKNGLEENGYQTMIAYDGVMGLRLFRVHTFDLVISDIILP--KMDGF 76

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL + IR  +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 77  ELCKEIRKTNPGIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRNN 136

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                         + +   G++    G    L  +E  +L Y+  N  + +++ +I   
Sbjct: 137 EATAPQPREIRYSDLYIDLQGKNVTRNGTPIKLSPKEYNLLLYMTENAERVLSRIEIAEK 196

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++         N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 197 VWNTH-FDTGTNFIDVYINYLRKKIDKDFDTKLIHTKAGMGFIL 239


>gi|161503675|ref|YP_001570787.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865022|gb|ABX21645.1| hypothetical protein SARI_01759 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|219523852|gb|ACL14889.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Arizona]
          Length = 224

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ I+  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIIDLGLPD--EDGLS 62

Query: 63  LPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L R  R+ S V  P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR  
Sbjct: 63  LIRRWRS-SDVLLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNS 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P +V    R+  V  E+  L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 122 GLASQVINIPPFQVDLSRRELSVNEEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 181 PDAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGYLFE 222


>gi|18309930|ref|NP_561864.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144608|dbj|BAB80654.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 229

 Score =  215 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +    +   +G  + + F+  E +  L+     D+  ++  L G   ++
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFF-DFDMVLLDLMLPGITGEI 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                 IR     P+I IS   +++  ++    G DD ++KP    E+LARV A+ RR K
Sbjct: 66  F--IEEIRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSK 123

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           ++N        +   + +    R+ +V+GE   L  +E +ILE L+ N  K   K  +F 
Sbjct: 124 ITNSSKGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   +   ++N +  HIS LR K+       D + +   +G+ +D
Sbjct: 184 TVW-EEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKMD 229


>gi|312198458|ref|YP_004018519.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229794|gb|ADP82649.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 221

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 12/222 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +G  +E     +    L ++      A+   +   G    +
Sbjct: 2   LVVEDEPHISDLIRLYLTREGFGVEVRQ--DGAAGLTAARELAPVALVLDVRLPGLDGRD 59

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + R +RA     P++ ++        +   + G DD + KP   RE++AR+ A+ RR   
Sbjct: 60  VLRALRAEENWTPVLFVTARDDEVDRILGLELGADDYLVKPFSPRELVARLRAVLRRAGP 119

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +      G + +  D R     G    L   E  +L  L+A  G    + ++ S 
Sbjct: 120 QAAQPATRTLRAGAVELDLDRRQVAAAGVPVALTATEFDLLAALLARPGLVYTRERLLSQ 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           ++G +  A     V+ H++++R KL +     P+ + R +GY
Sbjct: 180 VWG-YHAAAGTRTVDVHVAQVRAKLGD---VSPIRTVRGVGY 217


>gi|229063921|ref|ZP_04200222.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|229136075|ref|ZP_04264831.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|229169971|ref|ZP_04297664.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613489|gb|EEK70621.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228647396|gb|EEL03475.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228716391|gb|EEL68099.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 224

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+    + DV  ++  L       
Sbjct: 4   ILVVDDESSIRNLIRMQLEMEGYEV--LTAADGREALERWNEQPDVLILDVMLPDT--DG 59

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 60  YELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K     +++     G + +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 120 KKKEVPLNHEVIGAGDLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 180 EKVWG-FEYIGNTRAVDIMVQRLRKKLGASG--EYIKTIYGVGYKLDC 224


>gi|153840529|ref|ZP_01993196.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810]
 gi|149745809|gb|EDM56939.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810]
          Length = 229

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      +S   D+  I   ++      +
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAVNS---DIDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R + + P++ ++        +   + G DD + KP   RE+LAR+ AI RR   
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSH 120

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          E   +R++   ++     ++  L   E  +L + + N G  + K  +  
Sbjct: 121 TQKNGKNSDCIEYQELRLYPGKQEAYCDQQLLDLTATEFALLTHFVQNPGHVLTKETLSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|78778522|ref|YP_396634.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712021|gb|ABB49198.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 248

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +   +  +    L      D+  ++  +        
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMP--KLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++       I++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 DQIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGY 234


>gi|28897986|ref|NP_797591.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364229|ref|ZP_05776932.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260877141|ref|ZP_05889496.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260895801|ref|ZP_05904297.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902062|ref|ZP_05910457.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28806200|dbj|BAC59475.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088349|gb|EFO38044.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308093914|gb|EFO43609.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308109081|gb|EFO46621.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308111902|gb|EFO49442.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|328473058|gb|EGF43906.1| DNA-binding response regulator [Vibrio parahaemolyticus 10329]
          Length = 219

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  I    ++G   E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDDPRLGEQIIETLENNGWVPELSQDGIDALYRATSEEWDAIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARLRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|313898659|ref|ZP_07832194.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956543|gb|EFR38176.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 236

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 96/235 (40%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G  +  F +   +E L    RE ++     ++      +
Sbjct: 5   ILVVEDEKGIREAIQIYLKNQGYRV--FLAENGQEGLNIIKRETINLAVVDIMMPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD + KP    E+LARV +  RR + 
Sbjct: 63  TMTMEVRKDYDFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRRYEQ 122

Query: 122 --------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                                G + + S  ++  V  ++  L  +E  ILE LM + G+ 
Sbjct: 123 ILMLKEHAVSSVNREEEIYSIGALELNSTTKEVRVDNQIVKLRPKEFMILELLMKHAGRV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +  QI+ A++   +EA+    V  HI KLR+K+  +      +     +GY I+
Sbjct: 183 FSAQQIYEAVWN--EEAINTETVMVHIRKLREKIELDPKHPRYLKVVWGIGYKIE 235


>gi|297538213|ref|YP_003673982.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297257560|gb|ADI29405.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 230

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + +        +G  +   N  +       + + D++ ++  +       +
Sbjct: 5   ILLIDDDIALTEMLEQYLVTEGFDVTVANDGQTGAQYVLAGQFDLTVLDVMMP--KLNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  RIIR  S +P+I ++        +   +SG DD V KP   RE+LAR+ A+ RR K+
Sbjct: 63  ETLRIIRQASHIPVIMLTAKGDESERVMGLESGADDYVAKPCTPRELLARIRALLRRSKI 122

Query: 122 SNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           + +      +   G + +    R  EV G+   L   E  +LE L  N G  V K  +  
Sbjct: 123 TKDGSQQALQIVIGGLTITPAQRRVEVAGKAINLTSTEFNLLEILAKNAGHVVCKEDLAL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              G      +   V+ H+S +R+K+  +  G D + +   +GY +
Sbjct: 183 QAMGRTLVRFD-RSVDVHMSSIRQKIGTSSNGSDYIQTVYRMGYQL 227


>gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 222

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G  +E   S +  + L+ +    +  I   L       LE
Sbjct: 5   LLAEDDTSISEPLARALRREGYQVEV--SPDGPQALERALSGGIDLIVLDLGLPEMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA     P++ ++       T+   D+G DD V KP    E+LARV A+ RR + 
Sbjct: 63  VARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGQS 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   +R+ +D R   +  +   L  +E  +L  L+ + GK V + QI   ++   
Sbjct: 123 ETPVVQ--GVRIDADSRRAWLGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDT- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +       ++ HIS LR+KL +       + + R +G+  +
Sbjct: 180 NWWGSTKTLDMHISWLRRKLGDDASKPRYITTVRGVGFRFE 220


>gi|284051060|ref|ZP_06381270.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
          Length = 236

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 91/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +E     E    L  +   D+  ++  L        
Sbjct: 6   ILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDAFNPDLVILDVNLPDT--TGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +++ ++V ++ ++        +  FD G DD + KP    E+ ARV AI +R + 
Sbjct: 64  ALCQEMQSRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +    R+  ++     L   E  +L  L    G+   ++++   +
Sbjct: 124 VEETEMRSLTYGDLVIDPVRREVYIRDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +  ++   E+ VV+ HI ++RKK+         + + R +GY  D
Sbjct: 184 WD-YEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFD 227


>gi|266625369|ref|ZP_06118304.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
 gi|288862730|gb|EFC95028.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
          Length = 225

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    +  +     +   +     +   S   DV  ++  L   GE   
Sbjct: 3   ILIVEDEVRLADALGQIMEEQHYHTDIVYTGTDGLYCGLSGEYDVIVLDVMLP--GENGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R +R AH Q P++ ++    +   +   D G DD + KP    E+LARV A+ RR  
Sbjct: 61  DVVRKLRKAHVQTPVLMLTARDDISDKVTGLDRGADDYMTKPFVPEELLARVRALSRRQG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V       G + +     D     +   L  +E  +L+ LM N GK ++K  + S ++G
Sbjct: 121 EVVVEELHFGDLVLNLSTNDLLRGRKSIHLGYKEFEVLKLLMNNAGKIISKDTLISRVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   E+N VE++IS LRKKL        + + R +GY ++
Sbjct: 181 N-DSDAEDNNVEAYISFLRKKLFFLNSRVEIVTVRKVGYRLE 221


>gi|226309940|ref|YP_002769834.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092888|dbj|BAH41330.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 104/223 (46%), Gaps = 8/223 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + + ++D   +      +  D+G  ++  +  +    L      D+  ++  +   G   
Sbjct: 2   LILAVEDEKALLQTIAGVLADEGYQVDMADRGDDGLLLAERGIYDLLVLDIMMP--GMDG 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R +R      P++ ++   S+++ ++  D+G DD + KP    E+ ARV A+ RR 
Sbjct: 60  LSLVRTLRTKGIMTPVLFLTAKDSVESRVEGLDAGADDYLVKPFAAEELTARVRALLRRQ 119

Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N   E   GP+ +  +  D  V  E   L  +E  +L+Y + NR + + + QIF  +
Sbjct: 120 GKQNTEGELAYGPLSLKINEYDGFVDDEPMKLTTKEYELLKYFLQNREQILTRQQIFDRV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G+ D      VV+ ++  LRKKL    GF  + + R +GY +
Sbjct: 180 WGI-DSEANYGVVDLYVHYLRKKLGAYEGF--IRTIRNVGYIL 219


>gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281427|gb|ABR89837.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 233

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D +++ DG        G + +   +    + + S+   D+  ++  L       L
Sbjct: 3   ILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLP--KMSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +RA  S++P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+   +G   + + R LGY ++
Sbjct: 180 EWSEEVSNNAIEVYVHRLRKKIE--IGGLRIATVRGLGYCLE 219


>gi|19745448|ref|NP_606584.1| CovR [Streptococcus pyogenes MGAS8232]
 gi|19747562|gb|AAL97083.1| CovR [Streptococcus pyogenes MGAS8232]
          Length = 228

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ A +RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +  PL +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|323490769|ref|ZP_08095971.1| two-component response regulator [Planococcus donghaensis MPA1U2]
 gi|323395651|gb|EGA88495.1| two-component response regulator [Planococcus donghaensis MPA1U2]
          Length = 218

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 6/218 (2%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L+DD   + D                 +      L      D+  ++  +        E+
Sbjct: 2   LVDDEKRMLDLVALYLRPHHYVCTKAANGYQALELLKKESFDLVLLDIMMPD--MDGWEV 59

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R IR  S +P+I ++     +  +     G DD + KP    E+LAR+ A+ RR   + 
Sbjct: 60  CRDIRKFSDIPIIMLTAREQQEDVVKGLRLGADDYMTKPFGEEELLARMEAVLRRSAPAR 119

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
            R E   +    +G +   + +   L  +E  +L  LM N  K   + ++   ++G +D 
Sbjct: 120 -RIEFRGLLWDEEGFELSYEQKSIRLTPKEFSMLGLLMKNPNKVFERDRLLELVWG-YDS 177

Query: 184 AVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
             E   V+SH+  +R+K+R       D   +   +GY 
Sbjct: 178 ETEGRTVDSHVRNIREKVRQAGFPVDDHFLTVWGIGYK 215


>gi|291534308|emb|CBL07420.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291538051|emb|CBL11162.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 235

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 97/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++DG          ++  + + +  E L+    +++      ++      +
Sbjct: 6   ILIVEDDKEIRDGIEIFLKSQNYNV--YKAADGIEGLEIIESKEIHLAIVDIMMPRMDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R H   P+I +S        +   + G DD V KP    E++ARV +  RR   
Sbjct: 64  TMTLKLREHHDFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQIRRYTK 123

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            NN+++           G I +  D  +  V G+   +   E +IL  LM N G+  +  
Sbjct: 124 FNNKSQEKKENDRVHIIGGIELNEDTVEVFVDGKPVKMTPIEFKILALLMKNPGRVYSAD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +I+  ++   ++A+  + +  H+  +R K+  N      +     +GY ++
Sbjct: 184 EIYERVWN--EKAINTDTIMVHVRNIRDKIEINPREPKYLKVVWGVGYKME 232


>gi|228920706|ref|ZP_04084047.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228952377|ref|ZP_04114463.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228807294|gb|EEM53827.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228838924|gb|EEM84224.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 232

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 7   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLP--GIDGL 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  + ++ +I ++     +  +     G DD + KP     + AR+ ++ RR++
Sbjct: 65  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 124

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|37676469|ref|NP_936865.1| response regulator [Vibrio vulnificus YJ016]
 gi|37201011|dbj|BAC96835.1| response regulator [Vibrio vulnificus YJ016]
          Length = 232

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 102/223 (45%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E  ++    E      + D+  ++  L   G+ + 
Sbjct: 17  LLLVEDDKNLADGLLVSLEQAGY--ECLHAERISEVESLWPQADLVILDRQLPD-GDSIS 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            LP   +    VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  R    
Sbjct: 74  HLPGW-KKTKNVPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQLRSPES 132

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S+++ ET  + +    R+   +GE   L R E  +L +L +N G+   + ++   +
Sbjct: 133 SEQGSSDKVETENLVIDKSTREVFFKGEQITLTRTEFDLLLFLASNLGRVFTRDELLDHV 192

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++       V +H+ +LR+KL        +++ R +GY +
Sbjct: 193 WG-YNHFPTTRTVNTHVLQLRQKLAGLE----IETLRGVGYKM 230


>gi|329954397|ref|ZP_08295489.1| putative transcriptional regulatory protein ResD [Bacteroides
           clarus YIT 12056]
 gi|328527665|gb|EGF54658.1| putative transcriptional regulatory protein ResD [Bacteroides
           clarus YIT 12056]
          Length = 229

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  ++  NS E    +  SA   +          G K+ 
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMDISAYNLLLLDVMMGEISGFKMA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE+ ARV A+ RR + 
Sbjct: 66  SMLKKEKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRRTQQ 125

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +       +     + +    +   + GE  PL ++E  IL  L+ N+G+  ++  I S 
Sbjct: 126 AETERAPEQIVYKSLVLDIIKKRVSIDGEEAPLTKKEFEILLLLLQNKGRVFSREDILSR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+   +  V +  ++ +I++LRKK+   +    + ++   GY  +
Sbjct: 186 IW-SDEVYVLDRTIDVNITRLRKKIG--IYGKCIVTRLGYGYCFE 227


>gi|306819902|ref|ZP_07453555.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552059|gb|EFM39997.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 244

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   +++        +G   + F++ +       +   D+  ++  +       L
Sbjct: 14  IYIVDDEQRIRELIQMYLKKEGYDTKIFSNAKDALEEFKNQEPDLMILDIMMRE--MDGL 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR  S VP+I +S        +   + G DD + KP   RE++ RV  I +R+  
Sbjct: 72  ELCREIRKTSDVPIIFVSARSEELDRILGLELGADDYLAKPFSPRELMVRVKTILKRVSQ 131

Query: 122 SNN-----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + N             +     ++ D +  + +    P   +E  ILEYL+ N    +++
Sbjct: 132 NANADSKDKKEEPKVLKVSDFEMYPDIKLAKYKNTEIPFTIKEFDILEYLLRNISTPLSR 191

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            QI + I+G  D    E  V+  I ++RKKL+       + +   +GY ID N
Sbjct: 192 EQITAKIWGN-DRDGYERNVDDAIKRVRKKLKEYRVNLEIRTVWGIGYRIDVN 243


>gi|329908873|ref|ZP_08274974.1| two component transcriptional regulator, winged helix family
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546575|gb|EGF31550.1| two component transcriptional regulator, winged helix family
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 219

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +         +DG +++    L   +    S   D+  ++  L     + L
Sbjct: 3   ILLIEDHAGLGQAVREQLAEDGHAVDWMQRLADADASLRSTSYDLILLDLILPD--GQGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R  RA     P+I ++    +   +   ++G DD + KP    E+ AR+AA+ RR  
Sbjct: 61  DFLRKRRAGGDTTPVIILTARDQISDRIAGLNAGADDYLVKPFDLFELSARIAAVARRYG 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N +   G ++V    R  +  G V  L  RE  + E L+   G  ++K Q+   +Y 
Sbjct: 121 GNPNPQVHLGELQVNLSDRSVQRAGVVVELTAREWALFEALLQRPGALLSKPQLEERLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F   +E N +E HIS LRKKL    G+  + + R +GY +
Sbjct: 180 AFGAEIESNTIEVHISHLRKKL----GYQVIATVRGVGYRL 216


>gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 254

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +   ++      L   +  D+  ++  +        
Sbjct: 15  ILVADDEANIRRILETRLTMQGHEVLMASNGAEALELFRGSEPDLVVLDVMMPE--LDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IRA S+VP+I ++    +   +     G DD + KP   +E+ AR+  + RR   
Sbjct: 73  AVVERIRAQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRANT 132

Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           S            N    G + V  + R      E   L   E  +LE L++  G+ +++
Sbjct: 133 SQAGGGSGGGAAANVVVVGDLSVDFNRRQAFRAEERIRLTGMEFNLLELLISRSGEPISR 192

Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             +   ++G   + + +  VV+ HIS+LR KL +     + + + R +GY  
Sbjct: 193 LDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEHDPENPELILTARGMGYMF 244


>gi|24115626|ref|NP_710136.1| DNA-binding response regulator CreB [Shigella flexneri 2a str. 301]
 gi|30065634|ref|NP_839805.1| DNA-binding response regulator CreB [Shigella flexneri 2a str.
           2457T]
 gi|110808186|ref|YP_691706.1| DNA-binding response regulator CreB [Shigella flexneri 5 str. 8401]
 gi|24054966|gb|AAN45843.1| catabolic regulation response regulator [Shigella flexneri 2a str.
           301]
 gi|30043898|gb|AAP19617.1| catabolic regulation response regulator [Shigella flexneri 2a str.
           2457T]
 gi|110617734|gb|ABF06401.1| catabolic regulation response regulator [Shigella flexneri 5 str.
           8401]
 gi|313646243|gb|EFS10705.1| transcriptional regulatory protein creB [Shigella flexneri 2a str.
           2457T]
 gi|332748911|gb|EGJ79335.1| transcriptional regulatory protein creB [Shigella flexneri 4343-70]
 gi|332749686|gb|EGJ80102.1| transcriptional regulatory protein creB [Shigella flexneri 2747-71]
 gi|332768786|gb|EGJ98965.1| response regulator [Shigella flexneri 2930-71]
 gi|333009377|gb|EGK28833.1| transcriptional regulatory protein creB [Shigella flexneri K-218]
          Length = 229

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V+ HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDIHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|328544519|ref|YP_004304628.1| Response regulators consisting of a chemotaxis protein CheY domain
           and a winged-helix DNA-binding domain [polymorphum
           gilvum SL003B-26A1]
 gi|326414261|gb|ADZ71324.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 227

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G   +     E           DV  ++  L  +    L
Sbjct: 3   ILIIEDDKQAAAYLAKGLREVGHVADHAADGEEGLERALDGDYDVMIVDRMLPRR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R      P++ +S    +   +    +G DD + KP    E+LAR+ A+ RR K
Sbjct: 61  SVIEALRKAGDHTPVLILSALGQVDDRVTGLRAGGDDYLPKPFAFTELLARIEALGRRPK 120

Query: 121 VSNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S           + +          G+  PL  RE R+LEYLM + G+ V +T +   +
Sbjct: 121 ASGETETVYRVADLELDRLTHRCSRAGKDIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR K+        + + R  GYSI
Sbjct: 181 W-EYHFDPQTNVIDVHISRLRAKIDKDFDRPLLHTIRGAGYSI 222


>gi|296448436|ref|ZP_06890320.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296254060|gb|EFH01203.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 230

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +      +  F + G   +            S  R DV  ++  L       L
Sbjct: 6   ILIVEDDSEAGAYLVKAFREQGHVADHEVDGLAGYAAASDGRYDVIVVDRMLPR--LDGL 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L   +R    + P + +S    +   +    +G DD V KP    E+LARV A+ RR  
Sbjct: 64  SLISGLREQKIETPALILSALGQVDDRVKGLRAGGDDYVAKPYAFSELLARVEALARRRG 123

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K        G + +          G+   L  RE R+LEYLM + G+ V +T +   +
Sbjct: 124 GAKQEETVYRVGDLELDRLAHKVTSAGQEIVLQPREFRLLEYLMKHAGQVVTRTMLLENV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 184 WD-YHFDPQTNVIDVHISRLRAKIDKSRETPLLHTIRGAGYMI 225


>gi|115352153|ref|YP_773992.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282141|gb|ABI87658.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 224

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D A+  +  +      G  ++  ++         SA  D   ++  L   G   L + 
Sbjct: 6   VEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLP--GADGLAIL 63

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
             +R      P++ +S    +   +    +G DD + KP    E+ AR+  + RR + S 
Sbjct: 64  TAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQASG 123

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    GP+ +    R      +  PL   E R+LE++M N G+ + +T +F A++G
Sbjct: 124 VPQQTLLTVGPLELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEAVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ H+ +LRKK+        + + R  GY +
Sbjct: 184 -YHFDPGTNLIDVHMGRLRKKIDPPGAVPMIQTVRGSGYML 223


>gi|326408629|gb|ADZ65694.1| Transcriptional regulatory protein PHOP [Brucella melitensis M28]
 gi|326538351|gb|ADZ86566.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis M5-90]
          Length = 229

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQ--MDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +  R  R+   +P++ ++        +   D+G DD V KP H  E+L R+ A+ RR  
Sbjct: 61  SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLTRLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y 
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R +GY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGMGYRM 216


>gi|302391640|ref|YP_003827460.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302203717|gb|ADL12395.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 233

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 92/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    + E           D+  ++  L   G    
Sbjct: 6   ILVVDDEKNILELVKYNLIQEGYEVSLAINGEKALKKVDDIAPDLIILDIMLP--GLDGF 63

Query: 62  ELP---RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+    + +     +P+I +S    ++  +   + G  D + KP   RE+ +RV A+ RR
Sbjct: 64  EVCHCLQEMEKTEGIPIIFLSAKSEVEDKVKGLNLGATDYLTKPFSPRELASRVKAVSRR 123

Query: 119 LKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +  +          G + +   G    +  E   L  +E  +L YL+   GK  ++ ++ 
Sbjct: 124 INQNPYHKKETLRYGKLTMDLKGYRVLINKEEIDLTNKEFNLLAYLIDKLGKVCSRDELL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           + ++G ++       V+ HI  LRKK     +    + + + +GY +  N
Sbjct: 184 ANVWG-YENVSGIRTVDVHIRMLRKKFTQYNIESLLIKTVQGVGYKLVKN 232


>gi|255099323|ref|ZP_05328300.1| DNA-binding response regulator [Clostridium difficile QCD-63q42]
          Length = 228

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 92/226 (40%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G S++   ++E    +      D+  ++  L        
Sbjct: 4   ILLVEDDLSLIYGLEYSIQKNGFSVDVARTVEEALQIYKEKNYDLLLLDVSLPD--GDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S VP+I ++        +   D G DD + KP    E+++R+ A+ RR   
Sbjct: 62  DICKRVREASNVPIIFLTASDEEVNVVMGLDMGGDDYITKPFKLNELISRIKALLRRYNF 121

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++      ++  I V               L   E ++L  LM N+   + +  I   ++
Sbjct: 122 TSENVTELKSNNITVKLLENRVFKNEIELELTTAEYKLLCLLMKNKNIVLTRKNILDKLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
                 V++N +  ++ +LR K+ +       + + R +GY   WN
Sbjct: 182 DGNGSFVDDNTLSVYVRRLRNKIEDNPENPKNLLTVRRMGYK--WN 225


>gi|254425350|ref|ZP_05039068.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192839|gb|EDX87803.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 243

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D    +   +         +      +       +A + +  +   ++       
Sbjct: 10  ILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLDGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ + +RA S VP+I  +   S    +   + G +D + KP   +E++AR+ +I RR   
Sbjct: 70  QVCQRLRATSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSILRRAAR 129

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   V  +  E G   + S  R   ++G    L   E R++E L +  G   ++  
Sbjct: 130 RQEHVSGVVHRSAIEIGQFVIDSSTRRAYIEGHNLRLTEIEFRLIELLASRPGHIFSRGD 189

Query: 173 IFSAIYGLF-DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           I  A++G   + A +   V+ HIS+LR KL         + + R  GY  
Sbjct: 190 ILEALWGYDANSAADTKTVDVHISRLRIKLNETTHNPKYIVTIRGRGYMF 239


>gi|84497467|ref|ZP_00996289.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84382355|gb|EAP98237.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 254

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 91/230 (39%), Gaps = 20/230 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++++D   V     A     G     + +G  +L+         R DV  ++  L     
Sbjct: 26  LVVEDDPTVSSVLSAYLRRAGFEPVLAADGLTALQAW----RERRPDVVILDVMLPL--M 79

Query: 59  KVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LE+ R  RA      +I +S        L   + G DD + KP   RE L RV A+ R
Sbjct: 80  SGLEVLRRRRAEDDHAAVIVLSARGEEDDRLLGLELGADDYMVKPFSPREALGRVEALLR 139

Query: 118 RLKVSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R +            E   +RV +  R   V G    L  RE  +L YL+A+ G    K 
Sbjct: 140 RAERLGAVTLLPKVTERLGVRVDTGSRTATVDGRGVELTTREFDLLAYLIAHPGLTFTKE 199

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           Q+   ++G   +  + + V  H+ ++R+K+  +      + + R  GY  
Sbjct: 200 QLMRRVWGW--DFGDTSTVTVHVRRVREKIETDPSDPQRIVTVRGAGYRF 247


>gi|288959503|ref|YP_003449844.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288911811|dbj|BAI73300.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 253

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 17/231 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G  + G             AR D+  ++  L   GE  L
Sbjct: 7   LLVVDDDREIRSLVAQFLTKHGYRVTGVRDGAEMMRTLDGARVDLIVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L R +RA    +Q P+I ++        +   + G DD + KP   RE+LAR+ A+ RR
Sbjct: 65  SLCRRLRATLQTAQTPVIMLTAMGEETDRIVGLEMGADDYLAKPFSPRELLARIKAVLRR 124

Query: 119 L---------KVSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRV 168
           +           +          +    R+     G +  L   E  +L     +  + +
Sbjct: 125 VAAPLVAGGPTAAGTVLRFEGWSLDLTKRELRSPDGVLVQLSAGEYDLLVAFAEHPQRVL 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            + Q+     G      +   ++  +S+LR+K+  +      + + R  GY
Sbjct: 185 TRDQLLDLARGRSAVPFD-RSIDVQVSRLRRKIEPDPADPTLIKTVRGGGY 234


>gi|261251207|ref|ZP_05943781.1| transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260938080|gb|EEX94068.1| transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 219

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 107/222 (48%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E F+S    +  Q   + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECFHSETIADVAQYWDKADLVILDRQLPD-GDSVT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            LP   +   +VP+I ++   +++  +   D+G +D + KP    E+ AR+ A  R  + 
Sbjct: 62  HLP-EWKNIKEVPVILLTALVTVKDKVMGLDAGANDYLTKPFAEAELFARIRAQLRAPEG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + +++  T  + +    R+ + + E   L R E  +L +L +N G+   + ++   ++
Sbjct: 121 DAIDDSKVTTEHLIIDKATREVQYKDEAITLTRTEFDLLLFLASNLGRVFTRDELLDHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 G-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 217


>gi|168184909|ref|ZP_02619573.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182672016|gb|EDT83977.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 233

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 17/231 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEK 59
           +++DD   ++D           S+E  N ++  + L +       ++  I   ++     
Sbjct: 7   LVVDDEKEIRDAIEIYLR----SIENTNIIKAADGLDALDVLENNEIHVIILDIMMPKLD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +     IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR 
Sbjct: 63  GIRTCMKIREKNNIPIIMLSAKNEDTDKILGLNIGADDYVAKPFNPLELVARVNSQLRRY 122

Query: 120 KVSNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
               N              + +        V G+   L   E  IL  L  N G+    +
Sbjct: 123 TNLGNFPKTADVDEIYIDQLFINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVFPSS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           QI+  ++        EN V  HI +LRKK+  +      +     +GY ID
Sbjct: 183 QIYEYVWNEP-SFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKID 232


>gi|15804969|ref|NP_291011.1| DNA-binding response regulator CreB [Escherichia coli O157:H7
           EDL933]
 gi|15834610|ref|NP_313383.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
           Sakai]
 gi|168750963|ref|ZP_02775985.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4113]
 gi|168756818|ref|ZP_02781825.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4401]
 gi|168762752|ref|ZP_02787759.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4501]
 gi|168766682|ref|ZP_02791689.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4486]
 gi|168776622|ref|ZP_02801629.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4196]
 gi|168781690|ref|ZP_02806697.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4076]
 gi|168785043|ref|ZP_02810050.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC869]
 gi|168797973|ref|ZP_02822980.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC508]
 gi|195937669|ref|ZP_03083051.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809655|ref|ZP_03251992.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4206]
 gi|208812237|ref|ZP_03253566.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4045]
 gi|208820456|ref|ZP_03260776.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4042]
 gi|209399995|ref|YP_002273919.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4115]
 gi|217325103|ref|ZP_03441187.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. TW14588]
 gi|254796394|ref|YP_003081231.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226756|ref|ZP_05941037.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255160|ref|ZP_05947693.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli O157:H7 str. FRIK966]
 gi|12519430|gb|AAG59578.1|AE005671_2 catabolic regulation response regulator [Escherichia coli O157:H7
           str. EDL933]
 gi|13364834|dbj|BAB38779.1| catabolic regulation response regulator [Escherichia coli O157:H7
           str. Sakai]
 gi|187768032|gb|EDU31876.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4196]
 gi|188014947|gb|EDU53069.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4113]
 gi|189000768|gb|EDU69754.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4076]
 gi|189356081|gb|EDU74500.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4401]
 gi|189364332|gb|EDU82751.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4486]
 gi|189366953|gb|EDU85369.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4501]
 gi|189374813|gb|EDU93229.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC869]
 gi|189379581|gb|EDU97997.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC508]
 gi|208729456|gb|EDZ79057.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4206]
 gi|208733514|gb|EDZ82201.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4045]
 gi|208740579|gb|EDZ88261.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4042]
 gi|209161395|gb|ACI38828.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. EC4115]
 gi|209748778|gb|ACI72696.1| catabolic regulation response regulator [Escherichia coli]
 gi|209748780|gb|ACI72697.1| catabolic regulation response regulator [Escherichia coli]
 gi|209748782|gb|ACI72698.1| catabolic regulation response regulator [Escherichia coli]
 gi|209748786|gb|ACI72700.1| catabolic regulation response regulator [Escherichia coli]
 gi|217321324|gb|EEC29748.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
           str. TW14588]
 gi|254595794|gb|ACT75155.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia coli O157:H7 str. TW14359]
 gi|320190484|gb|EFW65134.1| Two-component response regulator CreB [Escherichia coli O157:H7
           str. EC1212]
 gi|320643909|gb|EFX13029.1| DNA-binding response regulator CreB [Escherichia coli O157:H- str.
           493-89]
 gi|320649067|gb|EFX17649.1| DNA-binding response regulator CreB [Escherichia coli O157:H- str.
           H 2687]
 gi|320654584|gb|EFX22596.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320665393|gb|EFX32477.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326345287|gb|EGD69030.1| Two-component response regulator CreB [Escherichia coli O157:H7
           str. 1125]
 gi|326346859|gb|EGD70593.1| Two-component response regulator CreB [Escherichia coli O157:H7
           str. 1044]
          Length = 229

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+   ++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDIVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|318076622|ref|ZP_07983954.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 266

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 21/232 (9%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G  +              +   D++ ++  +   G   + 
Sbjct: 40  LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVP--GMDGVS 97

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 98  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 157

Query: 123 N--------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                               G + V ++G +    GE   L   E R+L    A  G  +
Sbjct: 158 GGGARQAVEEEAAAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVL 217

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 218 SRDRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 264


>gi|226357509|ref|YP_002787249.1| response regulator, CheY [Deinococcus deserti VCD115]
 gi|226319500|gb|ACO47495.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 227

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V+D       + G  +   ++           R D+  ++  +   G   L
Sbjct: 4   ILIVEDNPGVRDMVREYLQEHGYRVRVASNGHEGLLEVRHHRPDLVLLDMMMP--GMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R  RA    P++ ++   +    +   + G DD V KP    E+LARV A  RR   
Sbjct: 62  EFLRRFRAAEHAPVVFLTARDAELDKVLGLELGADDYVTKPFSMAELLARVRAHLRRGNE 121

Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   A    G + + +  R   VQG    L R E  ++   +   G+  ++ ++      
Sbjct: 122 APPSAFVRAGELEMDAASRTFLVQGSRVDLTRSEFELMAAFLRAPGRVFSRLELLEQ--L 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             +    E  ++ H+  LR K+  + G    +++   +GY ++
Sbjct: 180 QEEALGAERTIDVHVRNLRAKIEPEPGKPRFIETVFGMGYRLN 222


>gi|171057189|ref|YP_001789538.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774634|gb|ACB32773.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 223

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG +      G +++   S    +   ++   D+  ++  L       L
Sbjct: 3   ILIAEDDQVLADGLLRSLRSAGYAVDHVGSGSEADAALAAHEFDMLILDLGLP--KLHGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +R   S VP++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR L
Sbjct: 61  EVLKKLRGRGSSVPVLILTAADSIEQRVKGLDFGADDYMAKPFSLQELEARVRALTRRGL 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     GP+   + GR   +   +  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GSASAIIRHGPLSFDATGRVAYINDLMIDLSARELSLLEVLLQRAGRLVSKDQLVERLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 180 EWGEEVSNNAIEVYIHRLRKKIEQ--GPIRIATVRGLGYCLE 219


>gi|238787325|ref|ZP_04631124.1| Transcriptional regulatory protein creB [Yersinia frederiksenii
           ATCC 33641]
 gi|238724587|gb|EEQ16228.1| Transcriptional regulatory protein creB [Yersinia frederiksenii
           ATCC 33641]
          Length = 232

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  I     +G +L  F+  E      ++    ++ ++  L       
Sbjct: 4   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALANGPPALAIVDVGLPD--ING 61

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +L R + A   ++P++ ++        +   + G DD + KP   RE+ ARV  + RRL
Sbjct: 62  FDLCRRLLAQVPELPVVFLTARSEELDRIIGLEIGADDYIAKPFSPREVSARVRTVLRRL 121

Query: 120 KVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + S          + G   +   G       +V  L R E  +L+ L+    +  ++ Q+
Sbjct: 122 QKSQTVVTSTALHQFGHFTLDEAGARVTYHQQVLWLTRYEYLLLKTLLLAPERVFSRQQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              ++   +E+ ++  V++HI  LR KLR     + P+ + R LGYS+
Sbjct: 182 MDIVWAQAEES-QDRTVDTHIKTLRSKLRTACDEESPIRTHRGLGYSL 228


>gi|327485596|gb|AEA80002.1| Copper-sensing two-component system response regulator CusR [Vibrio
           cholerae LMA3894-4]
          Length = 218

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 101/221 (45%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   +  ++    +  Q   + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--DCLHAETIADVKQHWDKADLVILDRQLPD-GDSVQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            L    +    +P+I ++   +++  +   D+G +D + KP    E+ AR+ A  R    
Sbjct: 62  HLMDW-KKLKDIPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRSPDS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +++  T  + +    R+    GE   L R E  +L +L +N G+   + ++   ++G
Sbjct: 121 GQDDSKVVTSNLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDELLDHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 -YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 216


>gi|121602270|ref|YP_988746.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583]
 gi|120614447|gb|ABM45048.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583]
          Length = 221

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G   +     E   +L S+   D   ++  L       +
Sbjct: 3   ILIVEDDRDLNHQLAETVRNAGYVSDSAFDGEEAYFLGSTESYDAVILDIGLPR--MDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    R     +P++ ++        +   D+G DD V KP +  E++AR+ A+ RR  
Sbjct: 61  RVVEKWRQDGHLMPILILTARDRWSDKVLGIDAGADDYVVKPFYLEEVMARLRALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + + +      V G++  L   E R+L YLM +  K V++T++   +Y 
Sbjct: 121 GHATSALSCGAVLLDTKTSRVFVDGQLIKLTSHEFRLLSYLMHHCDKVVSRTELIEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKKL    G D +++ R +GY +
Sbjct: 181 Q-DFDRDSNTIEVFVRRLRKKL----GVDFIETIRGMGYRV 216


>gi|332530381|ref|ZP_08406326.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040192|gb|EGI76573.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 225

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +         G  ++ F S    +        D   ++  L   G   L
Sbjct: 3   LLILEDDPQLGEALSGGLRQQGHVVDWFTSGPPADAALRGTAYDALVLDLGLP--GTDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R  R     +P++ ++   +L+  ++  D G DD + KPI   E+ AR+ A+ RR  
Sbjct: 61  VWLRRWRQGGLALPVLVLTARDTLEQRIEGLDLGADDYLIKPIALDELAARLRAMLRRAT 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +AE   G +R     +    Q +   L  RE  +LE L+ N  + ++KTQ+   +Y
Sbjct: 121 GRATQAEWVHGDLRYDPASKQVHWQDKPVELTGREISLLEVLLKNPQRVLSKTQLLEQLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  E N +E HI  LR+K+        V + R LGY++
Sbjct: 181 DWGGGEPESNALEVHIHHLRRKI----APGVVRTVRGLGYAL 218


>gi|330963138|gb|EGH63398.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 225

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVMLP--GLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|294341311|emb|CAZ89725.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
          Length = 240

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++    A    +G+ +      +  E    ++  D+  ++  L   G+  L
Sbjct: 7   ILIVDDDAEIRRLLSAYLQKNGLRVTAVGDGKAMERALLASGVDLIVLDLMLP--GDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P++ ++        +   + G DD + KP   RE+LAR+  I RR + 
Sbjct: 65  TLCRNLRAKSDIPILMLTARGEETDRIVGLEMGADDYLPKPFSARELLARIKVILRRARS 124

Query: 122 --------SNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +       + +         G V  L   E R+L   +++  + + + Q
Sbjct: 125 LPRNLQPEEARQVRFAGWTLDTAHRHLVSPAGVVVALSGAEYRLLRVFLSHPNRVLNRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +     G   + ++   ++  +S+LR++L +       + + R  GY +
Sbjct: 185 LVDLTQGREADPLD-RSIDVQVSRLRQRLGDDPRDPALIKTVRGAGYVL 232


>gi|254380718|ref|ZP_04996084.1| two-component systen response regulator [Streptomyces sp. Mg1]
 gi|194339629|gb|EDX20595.1| two-component systen response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+         +G  + G           ++   D   ++  +       L
Sbjct: 21  ILVVDDEPEVRAAVEDGLAVEGYEVRGAADGLAGLSQVAAWEPDAVVLDVMMPV--LDGL 78

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P++ ++   S+   +D  ++G DD + KP    E++ARV A+ RR  
Sbjct: 79  GVCRQLRAMGDRTPILVLTALDSVSERVDGLEAGADDYLVKPFALDELVARVRALLRRAA 138

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   A       + +    R            R E  +LE L+ + G+ + +  I   +
Sbjct: 139 PAPGGAAALGFADLVLDPATRTGRRGSRPLEFSRTEAALLELLVRHAGQVLPRELILELV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  D   + N +  +I  LR+KL        V +   +GY +D
Sbjct: 199 WGQ-DFGPDSNSLAVYIGYLRRKLEAGGEPRLVHTVHGVGYRLD 241


>gi|260469831|ref|ZP_05813985.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259028402|gb|EEW29724.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 227

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D  +    + G   +   +     +  +S   DV   +  +   G   L
Sbjct: 3   LLLVEDDHRTADYIVRGLTEAGHVCDLLRNGHDALFAATSGTYDVIVADRMIP--GLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + IRA   + P I ++    +   ++  ++G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  SLVKAIRAAGVRTPAIFLTSVGGIDDRVEGLEAGGDDYLVKPFAFSELLARINALGRRPA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    R    QG    L  RE  +LE LM   G+ + +T +   ++
Sbjct: 121 AQEQKTVLRVADLEMDLIMRRVVRQGRPIDLQPREFSLLEVLMRGEGRVITRTMLLERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F      +VVE+HIS+LR K+        + + R  GYS+
Sbjct: 181 D-FHFDPRTSVVETHISRLRAKIDKPFETQLIHTVRNTGYSL 221


>gi|227486683|ref|ZP_03916999.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235395|gb|EEI85410.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
           51172]
          Length = 237

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +   +    +G  +  + + + EE L+    ED+  +   L+       
Sbjct: 6   ILIIEDEESINNIVKSYLVKEGYEV--YQAFDGEEGLRKFLAEDIDLVILDLMLPKMLGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S+VP+I +S        +     G DD + KP   RE++ R+ A+ RR++ 
Sbjct: 64  DVMKEIRNRSEVPVIMLSAKVEENDKVTGLRLGADDYITKPFSARELIERIKAVLRRIEK 123

Query: 122 SN-NRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N  RA+      G + +  +       G    L + E  IL+ L +N  K   + +I  
Sbjct: 124 YNIPRADIIKTLDGRLEMDLEYNRFFKDGVEIYLTKNEFSILKTLFSNPNKIYTRDEIIE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
             +G +D    +  +++HI  +R+K+ +       + +   +GY 
Sbjct: 184 ITFG-YDYDAYDRAIDTHIKNIRQKIEDNPKKPMYIKTIYGMGYK 227


>gi|187776729|ref|ZP_02993202.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
 gi|187775388|gb|EDU39190.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  ++   S   EE L     E    I   ++       
Sbjct: 5   ILIVDDDKTIVEFLQIFLIKEGYEVKF--SYNGEEALNKIKNEKFDLILMDIMMPKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  ++IR  +  P+I ++   + Q  +  F SG DD + KP    E+  R++AI RR  V
Sbjct: 63  EAIKVIRKFTNTPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLIELSLRMSAILRRSNV 122

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +               L  +E  IL  L  N+G+    ++++  
Sbjct: 123 REFEDDKYIIKIKDLELNLKEHTLYKGEGEITLTPKEFDILCLLARNKGRVFPSSELYER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++G  +    +N + +HI  LR+KL + +     + +   +GY I+
Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIE 227


>gi|326792369|ref|YP_004310190.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543133|gb|ADZ84992.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +++     F      +   N  +    +      D+  ++  +   G    
Sbjct: 4   ILLVEDEKRMQEIISDYFQVKDCKVICVNQGKEALSILEKESFDLILLDVMMP--GIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R   + P+I I+     +  L  ++ G DD V KP     + A+V ++ +R K 
Sbjct: 62  TVCKEVRLRYETPIIFITAKSDEEDQLYGYELGADDYVTKPFSLGVLYAKVNSLIKRAKG 121

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   ++ +   I +     +  V GE   L   E R+L Y M N+ + + + Q+   ++G
Sbjct: 122 TIIEDKLKVNDICIDCKKLEVTVGGEEIKLAPMEYRMLVYFMRNKNQVITRDQLIVRLWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D    + V+++H+ KLRK L        + +   +GY ++ 
Sbjct: 182 -YDFEGNDRVIDTHVKKLRKALGKSG--KAIRTIMKVGYKLEV 221


>gi|289643612|ref|ZP_06475726.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506561|gb|EFD27546.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 247

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 28/243 (11%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V++        +G  +             +  R D+  ++  +       LE
Sbjct: 4   LVVDDEPAVRESLERSLRFEGYEVSSAQDGAEALDAVTRDRPDIVVLDVMMPRV--DGLE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
             R +RA    +P++ ++    L   +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  ACRRLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALTRRASL 121

Query: 121 -----------------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157
                                            +R+    R          L + E  +L
Sbjct: 122 SARAASAAAVAAGGSADSAGPGPGRPQVLTFSDVRLDPGSRQVTRGDRELTLTKTEFDLL 181

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           E  +A++ + ++++ I   ++G +D     N +E  +S LR+KL        + + R +G
Sbjct: 182 ELFLAHQRQVLSRSTIMERVWG-YDFGPSSNSLEVFVSYLRRKLEAGGEPRLLHTVRGVG 240

Query: 218 YSI 220
           Y +
Sbjct: 241 YVL 243


>gi|15807237|ref|NP_295967.1| phosphate regulon transcriptional regulatory protein PhoB
           [Deinococcus radiodurans R1]
 gi|6460051|gb|AAF11793.1|AE002057_1 phosphate regulon transcriptional regulatory protein PhoB
           [Deinococcus radiodurans R1]
          Length = 238

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V+I+D + V+D         G+ +  + S +  E   + A  D   ++  L   GE  + 
Sbjct: 5   VVIEDESTVRDVLRFHLERAGLRVSAYASTQAAEEAGALAGADALVLDWMLP--GESGIG 62

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             R +R  + +   P++ ++   +    ++  ++G DD + KP    E++ARV A+ RR 
Sbjct: 63  FLRRLRTDNDLRRLPVLMLTARAAEAERVEGLETGADDYLTKPFSAAELVARVRALLRRA 122

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +      GP+ V     + ++ G    L RRE  +L +L AN G+  ++T++   ++
Sbjct: 123 QPETPQHLGNGPLTVDLAAAEAQLAGRTLNLTRREFDLLAFLTANAGRVYSRTELLDRVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID-WN 223
           G  D    E  V+ H+++LR  L +  G    +++ R  GY +  WN
Sbjct: 183 GA-DFLGGERTVDQHVTQLRAHLGDDPGKPSFLETVRGKGYRMRAWN 228


>gi|159902689|ref|YP_001550033.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887865|gb|ABX08079.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 248

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ DD A ++          G  +   ++         +   D+  ++  +       
Sbjct: 10  IILVADDEASIRRILETRLSMIGYQVVTASNGNEALEKFRNLEPDLVVLDVMMP--KLDG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR++
Sbjct: 68  YGVIQELRKESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRIE 127

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++   +    R+ ++ R      E   L   E  +LE L++  G+  ++ +I
Sbjct: 128 KEHIAGLPNSGVIQVASFRIDTNKRKVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEI 187

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
              ++G   +  V+  VV+ HIS+LR KL +     + + + R  GY
Sbjct: 188 LKEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGY 234


>gi|186683239|ref|YP_001866435.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465691|gb|ACC81492.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 710

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++++                 +++  +       L  +   D+  ++  L    E  +
Sbjct: 3   LLIVENDQDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPD--ENGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R +R  +Q  P++ ++        +  F++G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  RLCRQLRTQNQQEPILLLTGKVDPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V       G +++  +  +   QG+   L  +E ++LE  + +  +   +  +   I  
Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRQIFDRRTLLDRICS 180

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + DE   E  V + I  LR+KL+   L  DP+++   LGY +
Sbjct: 181 I-DECPGEEAVTTQIRGLRRKLQMAGLNSDPIETLYGLGYRL 221



 Score = 86.9 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +     A     G  +    +S +F ++L+++   D+  ++  +   G   
Sbjct: 593 LLIVDDDPALLSMLEAQLQLWGFQVTTLADSSQFWQYLEATT-PDLLLLDVAMP--GFSG 649

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +EL +++++    S++P++ +S +    T      +G DD + KPI   +++ R+
Sbjct: 650 IELCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 704



 Score = 60.3 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 1/127 (0%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +LIDD   + +   A   +  + LE    L            D   ++       E  
Sbjct: 467 VVLLIDDDTDLIERMQANASNWSIHLETVTDLTLARQRLQYLTPDAIILDLIFPNTTESG 526

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L   ++     +P++ ++    L   ++    G +  + KP    E+   V+ +  R+
Sbjct: 527 LTLLAQLKHQFPTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLHRI 586

Query: 120 KVSNNRA 126
              N R 
Sbjct: 587 DTINARL 593


>gi|319936036|ref|ZP_08010459.1| hypothetical protein HMPREF9488_01290 [Coprobacillus sp. 29_1]
 gi|319808986|gb|EFW05493.1| hypothetical protein HMPREF9488_01290 [Coprobacillus sp. 29_1]
          Length = 220

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 101/219 (46%), Gaps = 3/219 (1%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +++    L    G  ++    ++ E  L   +  DV  I+  L       
Sbjct: 1   MILIVEDDIAIQETLKELLCMKGYQVQQAYHMK-EALLLDKSHIDVMIIDIQLPD--GNG 57

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + L + +R  SQ+P++ ++     QT ++  ++G DD + KP    E+LAR+  I RR++
Sbjct: 58  ITLCQQMRQQSQIPILFLTAKDDEQTIVEALNAGGDDYITKPFRANELLARLNCIMRRIE 117

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++  +T  + +           +   L      IL  ++ N+G  + + ++   I   
Sbjct: 118 HNHDIIQTNDLSIDIRKYRVMKNNQEIVLSAIGYEILFLIVQNQGMVITRERMIEFIEEK 177

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
               +E+N V  H+ +LR+KL      + +++ R +GY 
Sbjct: 178 TGNYIEDNTVSVHMKRLREKLGQYQQQEYIETVRGIGYR 216


>gi|312793945|ref|YP_004026868.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181085|gb|ADQ41255.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 234

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
            ++DD   + +         G +++ F + E        +  D+  ++  L        E
Sbjct: 7   YVVDDEKDILELVSEYLIQKGYAVKTFENGESFLEEFGKSEPDIVILDIMLPD--IDGYE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR +S VP+I +S        +   + G DD ++KP    E+ AR+  I RR+  S
Sbjct: 65  ICKRIRKNSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRRVNKS 124

Query: 123 ----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +N  E   I+V  + R+    G    L  +E      L+    K + ++ I   I+
Sbjct: 125 PIKQDNVIEMFGIKVDFNQRNVFYNGTQIELSPKEFETFALLLKESTKVLKRSYILERIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G      +E +V+  I +LRKK+        + +   LGY ++
Sbjct: 185 GDP-ALYDERMVDDVIKRLRKKILQYNLPVEIKTMWGLGYKLE 226


>gi|290352251|dbj|BAI78836.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLNLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|264676241|ref|YP_003276147.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533423|ref|ZP_07046805.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262206753|gb|ACY30851.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718629|gb|EFI59604.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 243

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 96/236 (40%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQ-----SSAREDVSAIEAFLIG 55
            ++I+D   +        G++G+ +      +   E LQ     S    D+  ++  L  
Sbjct: 6   LLMIEDDVRLAQMVSDYLGNNGLEVTHMADGKSGLEQLQPSDGGSVELPDLVILDLMLPD 65

Query: 56  KGEKVLELPRIIRAHS----QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
                LE+ R IR+      QVP++ ++        +   + G DD + KP   RE+LAR
Sbjct: 66  --MDGLEVCRRIRSMPGTPAQVPVLMLTAKGDPMDRIIGLELGADDYLPKPFEPRELLAR 123

Query: 112 VAAIYRR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           + AI RR         +N     G + +  D R   V  +   L   +  +L  L    G
Sbjct: 124 IRAILRRKGSESQATPANAVMRFGSLEIDRDARTVSVGEQQADLTSYQFDLLVALAERAG 183

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + + + QI  A+ G   EA +   ++ H+ ++R  +  +      + + R +GY  
Sbjct: 184 RVLTRDQIMEAVRGRELEAFD-RSIDVHMGRIRAAIEADPKAPKRILTVRGVGYVF 238


>gi|257784846|ref|YP_003180063.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473353|gb|ACV51472.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 234

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 97/234 (41%), Gaps = 17/234 (7%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   ++++D   +          +G  ++   +L+     + +   D   I   ++    
Sbjct: 1   MIKVLIVEDEEKIARFIELELKHEGYEVD--KALDGRTGAEKALTNDYDLILLDILLPQL 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             LE+ R IR     P I ++   S+   +   D+G DD + KP    E+LAR+    + 
Sbjct: 59  NGLEVLRRIRREKNTPTIMLTARDSVMDKVAGLDAGADDYLTKPFAIEELLARIRVALKH 118

Query: 119 LKV------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
            +V            + N      + +  D R+  V      L  +E  +L  LM + G 
Sbjct: 119 HEVDSTSSQIPSNVPTKNVFTIKGVSLDVDRREVCVNNNSIELTTKEFEVLRMLMEHAGV 178

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +++ +I S   G ++ A E N V+ HI+ LR K+ ++     + + R +GY I
Sbjct: 179 VLSRERIASEALG-YEFAGETNNVDVHIAHLRAKIDDQYNIKLITTVRGVGYVI 231


>gi|227539981|ref|ZP_03970030.1| possible response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240259|gb|EEI90274.1| possible response regulator [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 226

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 101/224 (45%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +       + G   +   + +     + + + D S I   +I      L
Sbjct: 3   ILIIEDDLRVAELIERAVQEQGF--QTMLAYDGMSGKKLALQHDFSLIITDIILPKIDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +L + +R     +P+I ++   +    ++ FD+G DD + KP   RE++AR+ A+ +R  
Sbjct: 61  DLCKEVRQLKPDLPIIMLTALGTTDNKVEGFDAGADDYLVKPFEMRELIARIRALLKRKD 120

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V++   +   + +  + +  +  G    L  +E  +L+Y +++  K ++++ I   
Sbjct: 121 QSASVASFVLKYHDLEMNLNTKMVKRAGIEIELTPKEFNLLQYFLSHPEKVLSRSDIAEH 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++         N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 181 VWETH-FDTGTNFIDVYINYLRKKIDKGFDHKLIHTKPGMGFIL 223


>gi|160895408|ref|ZP_02076177.1| hypothetical protein CLOL250_02965 [Clostridium sp. L2-50]
 gi|156862910|gb|EDO56341.1| hypothetical protein CLOL250_02965 [Clostridium sp. L2-50]
          Length = 229

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +   +E   +    + L  +   D S I   L+       
Sbjct: 4   ILIIEDELSIAELERDYLELNDFEVEIETN--GAKGLDKALENDYSLILLDLMLPDLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR    +P+I ++   +    +     GVDD V KP    E++ARV A   R + 
Sbjct: 62  EICRQIREKKDIPIIMVTAKKNDIDKIRGLGLGVDDYVTKPFSPSELVARVKAHISRYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   +++    R   V GE      +E  +L +L +N  K  +K ++F
Sbjct: 122 LIGSTALQNDVIEIRGLKIDKTDRRVYVDGEEKVFTNKEFDLLTFLASNPNKVFSKDELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 NKIWNM-ESIGDIATVTVHIKKIREKIEFDTSKPQYIETVWGVGYRF 227


>gi|116873785|ref|YP_850566.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742663|emb|CAK21787.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 231

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLIGKGEK 59
            ++ DD   + D       ++G ++  + + +  E   L    +  +  ++  +      
Sbjct: 5   ILIADDDREIVDLVKLYLQNEGYTI--YQAYDGAEVWRLVQEKQPTLVILDIMMPE--MD 60

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LE+ R++R      P++ +S        +    +G DD + KP +  E+  RV AI RR
Sbjct: 61  GLEVCRLMRKSGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++       VS ++   GPI V        V  +   L   E  IL  L +  G+  +  
Sbjct: 121 MQQMSQAEPVSRDKVVIGPIVVDRGLHVVTVSEKELHLTTSEFDILFLLASEPGRVFSSE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
            IF  I+           V  HIS LR KLR+   G   + +   +GY I+
Sbjct: 181 YIFEKIWQEK-ALGASKTVMVHISNLRDKLRDAMGGESVIKTIWGVGYKIE 230


>gi|33603516|ref|NP_891076.1| response regulatory protein [Bordetella bronchiseptica RB50]
 gi|33577640|emb|CAE34905.1| response regulatory protein [Bordetella bronchiseptica RB50]
          Length = 223

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 93/220 (42%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G S++   +           R DV  ++  L   G+   
Sbjct: 3   ILVIEDDLKTGDYLKKGLLESGYSVDLARNGIDGLHRLREQRYDVLVLDVMLP--GKDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           ++   +R  S VP+I ++    +   +     G DD + KP    E++ R+  + RR   
Sbjct: 61  QVIEEVRQDSDVPVIFLTARDHVADRIRGLRLGADDYLVKPFSFAELVLRIQTMLRRGAA 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   +R+    R     G    L  +E  +L  L+  +G+ +++T I S ++ +
Sbjct: 121 RAAETLQVADLRLDPVRRKVTRGGASIVLTNKEFMLLHLLIRRQGEALSRTIIASEVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + NVV+  I +LR K+        + + R +GY++
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDAPFPLKLIQTVRGIGYAL 219


>gi|261414846|ref|YP_003248529.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371302|gb|ACX74047.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327318|gb|ADL26519.1| DNA-binding response regulator [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 238

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 16/234 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  +++ G    F  +   +E     E       S +  +  ++  L  K     
Sbjct: 6   ILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKK--SGF 63

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ RIIR  H +  +I ++      + +   D G DD V KP    E+LARV A  RR+ 
Sbjct: 64  EVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRRID 123

Query: 121 VSN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +             +  +   I +          G    L  RE +IL+Y    RG+ V 
Sbjct: 124 LQTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGEVVL 183

Query: 170 KTQIFSAIYGLFDE-AVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +  +   ++G   E       +++HI  LR+KL +       + S R  GY  D
Sbjct: 184 REDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKFD 237


>gi|225020670|ref|ZP_03709862.1| hypothetical protein CORMATOL_00677 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679950|ref|ZP_07402760.1| DNA-binding response regulator MtrA [Corynebacterium matruchotii
           ATCC 14266]
 gi|224946616|gb|EEG27825.1| hypothetical protein CORMATOL_00677 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660570|gb|EFM50067.1| DNA-binding response regulator MtrA [Corynebacterium matruchotii
           ATCC 14266]
          Length = 228

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G +    N       +      D+  ++  L   G   ++
Sbjct: 10  LVVDDDPAISEMLTLVLSTEGFASVVVNDGGQAVEVFQRENPDLVLLDLMLP--GMNGID 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IR  S VP++ ++        +   +SG DD + KP   +E++ARV A  RR  + 
Sbjct: 68  ICRAIRQESTVPIVMLTAKTDTVDVVLGLESGADDYIPKPFKPKELVARVRARLRRSDES 127

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +  E G + +   G      GE   L   E  +L  L +  G+   + ++   ++G +
Sbjct: 128 STDSMEVGDLLIDVPGHSVSRDGEEISLTPLEFDLLHELASKPGQVFTREELLQRVWG-Y 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 187 RNASDTRLVNVHVQRLRAKIEKDPEKPQIVLTVRGVGYK 225


>gi|123967688|ref|YP_001008546.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197798|gb|ABM69439.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 248

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +   +  +    L      D+  ++  +        
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMP--KLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++       I++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGY 234


>gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus LMG 18311]
 gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus CNRZ1066]
          Length = 229

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +    +    E L+ +  +D   I   L+       
Sbjct: 5   ILIVEDERNLARFVSLELQHEGYDV--VTADNGREGLEMALEKDFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ A +RR   
Sbjct: 63  EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K     +    +++    R      EV PL +RE  +L  L++N  + + + ++  
Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|330873035|gb|EGH07184.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 225

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVMLP--GLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEQKLLHTIRGMGYVLE 220


>gi|182420209|ref|ZP_02951439.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237665789|ref|ZP_04525777.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182375907|gb|EDT73498.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237658736|gb|EEP56288.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 226

 Score =  215 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D        D    +   + +  E L     +  S +   ++   +  +
Sbjct: 5   ILIVDDDKEIRDLISLYLEADRFYTD--KAADGVEALIKLEEKKYSLVILDIMMPKKDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR   ++P+I ++        ++    G DD ++KP    E++ARV A  RR  +
Sbjct: 63  ETIIEIRKKYKMPVIFLTAKSQEIDMINGLTLGADDYISKPFSSLELIARVKAQLRRYTI 122

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N          G + + ++  +  V+G    L   E +ILE +  NR K     +++  
Sbjct: 123 LNLNSDEKIIRVGDLVLNTEMHEVTVKGNEVRLTPTEYKILEVMCKNRNKVFTVEELYEF 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+     +V +  +  HI+KLR+K+  +    + + +   +GY I
Sbjct: 183 IWKEK-YSVSDTSIMVHITKLRRKIEKDSKNPEYIKTVWGIGYKI 226


>gi|315606091|ref|ZP_07881122.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312373|gb|EFU60459.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 225

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +      G +G  +    +    + L  +   D+  ++  L       L+
Sbjct: 5   LLVEDDPAISEPLARALGREGYDVRAHAT--GGQALADARGVDLVVLDLGLPD--IDGLD 60

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           + R +RA    VP++ ++        +   D+G DD V KP    E+LARV A+ RR   
Sbjct: 61  VARELRASGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQTS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +        IR+               L  +E  +L  L+   G  VA+  +   ++G
Sbjct: 121 EPAEGELRAQDIRMDVAAHRAFAGDTELSLTAKEFDLLRVLLREAGSVVARETLMREVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             D       ++ H+S LR+KL  +      + + R +G+  +
Sbjct: 181 -SDPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRFE 222


>gi|271502259|ref|YP_003335285.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270345814|gb|ACZ78579.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 222

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+++G +    ++G   +  ++ +  + L +SA   +  ++  L    E  L
Sbjct: 3   LLIVEDDTLLQEGLLQAMRNEGYVCDCASTAKEADALINSAHYSLVVLDLGLPD--EDGL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L  R  R + Q P++ ++   ++   +   D G DD + KP    E  ARV A+ RR +
Sbjct: 61  TLLGRWRRNNYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S++       I +  + +   +  +   L  +E  IL  L+   G +V +  +   +Y 
Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+    N +E HI  LR+K+    G + + + R  GY +
Sbjct: 180 SWDDDPSSNSLEVHIHNLRQKI----GKNRIKTLRGFGYLL 216


>gi|167617621|ref|ZP_02386252.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257140513|ref|ZP_05588775.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 225

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D  +  +  +      G +++   +         S   DV  ++  L   G   L + 
Sbjct: 7   IEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLP--GVDGLTIL 64

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
             +R+   + P++ +S    +   +    +G DD + KP    E+ AR+  + RR + S 
Sbjct: 65  TTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQASP 124

Query: 124 NRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ET    GP+ +    R     G    L   E R+LE++M + G+ + +  +F A++G
Sbjct: 125 APFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ H+ +LRKK+        + + R  GY +
Sbjct: 185 -YHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYIL 224


>gi|186683925|ref|YP_001867121.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466377|gb|ACC82178.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 225

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       D    ++     E           D+  ++  L       +
Sbjct: 3   ILLVEDDVRLAETLAEALTDQRYMVDVVTDGEAGWNQAKMLDYDLLLLDVMLPE--LDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R+HS  +P++ ++   ++   +   D+G DD V KP+  +E+ AR+ A+ RR  
Sbjct: 61  SLCHRLRSHSYSMPVLMLTARDTVSDKITGLDAGADDYVVKPVDLQELFARIRALLRRGN 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           VS+    E G + +     +      +  L  +E  ILE L+ N  + ++++ I   I+ 
Sbjct: 121 VSSPPILEWGNLHLNPSTYEVSYGKNMLHLTPKEYGILELLLRNGRRVLSRSVIIEHIWS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           L +   EE+ V+ H+  LR+KL+    F D +++   +GY +
Sbjct: 181 L-ESPPEEHAVKVHLRSLRQKLKAAGAFEDFIETVHGIGYRL 221


>gi|317493853|ref|ZP_07952270.1| heavy metal response regulator [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918180|gb|EFV39522.1| heavy metal response regulator [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 226

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   S +  E L  +   D  AI   ++  G    
Sbjct: 3   LLLVEDEEKTSTYLNRALSESGFTVDV--SADGAEGLHYALEFDYDAIILDVMLPGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  RVLEGVRAAKQTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRAT 120

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + +   + +    R     G    L  +E  +L  L  ++G+ ++K  I   I+
Sbjct: 121 DGADITQLQIHDLHLDLLARRVFRAGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+        + + R +GY ++ 
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKVDAPFDVKLLHTVRGMGYVLEV 223


>gi|222102367|ref|YP_002546508.1| two component response regulator [Agrobacterium vitis S4]
 gi|221739611|gb|ACM40313.1| two component response regulator [Agrobacterium vitis S4]
          Length = 225

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    +   +      G S++               R D+  ++  +   G   L
Sbjct: 3   ILVIEDDQTTRKYLVKGLSSAGHSIDCIGDGREGLSAGLDTRYDILIVDRMIP--GLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA S + P++ ++    +   ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  NLVKSLRAASVRTPVLFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELVARINALVRRPP 120

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++    +   G + +    R     G++  L  RE  +LE LM N G+ + KT     I+
Sbjct: 121 IAAEKTKLRVGDLEMDLVARTTSRAGQLIELLPREFSLLELLMRNEGRVLTKTMFLEKIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F+   + +VVE+HIS+LR K+        + + +  GY++
Sbjct: 181 N-FNFDPQSSVVETHISRLRAKIDKPFSTSLLHTVKNTGYTL 221


>gi|86605140|ref|YP_473903.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86553682|gb|ABC98640.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 246

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D        +G S++  +      E LQ         +    +  G   
Sbjct: 4   ILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPGLSG 63

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + +R   +  P++ ++   +L   ++  D+G DD + KP   RE+LARV A+ RR 
Sbjct: 64  LSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRA 123

Query: 120 KVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R + G + +  + +    QG +  L ++E R+LEY MA+ G+ +   QI+  
Sbjct: 124 AGPGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYER 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   D     NV+ + +  LR++LR     + + +    GY  
Sbjct: 184 VWAGED-PPSSNVLAAQVRLLRRRLRLPGSPELIHAVYGKGYRF 226


>gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus
           thermophilus ND03]
          Length = 229

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +   ++      L      D+  ++  L        
Sbjct: 5   ILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELALEKDFDLILLDLMLPE--MDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ A +RR   
Sbjct: 63  EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K     +    +++    R      EV PL +RE  +L  L++N  + + + ++  
Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|170721590|ref|YP_001749278.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169759593|gb|ACA72909.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 226

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 6/219 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D A+     +A     G+ ++  ++             D+  ++  L       L + 
Sbjct: 7   IEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIGGGYDLITLDRMLPEV--DGLTIV 64

Query: 65  RIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121
             +R      P++ IS    +   +    +G DD + KP    E+ ARV  + RR  V  
Sbjct: 65  TTLRNLKIATPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPM 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  R +   +++     +     +   L   E ++LEYLM + G+ + +  IF  ++G +
Sbjct: 125 TQTRLQVADLQLDLISHEARRGDQTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 N+++ HI +LRKK+ +      + + R  GY+I
Sbjct: 184 HFDPGTNLIDVHIGRLRKKIDSPGQSPLIRTVRGSGYAI 222


>gi|28868517|ref|NP_791136.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213968347|ref|ZP_03396491.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301383478|ref|ZP_07231896.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302129901|ref|ZP_07255891.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28851755|gb|AAO54831.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213926985|gb|EEB60536.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|331015193|gb|EGH95249.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 225

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVMLP--GLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPLQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|291524414|emb|CBK90001.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
          Length = 222

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       +    +  F + +           D+  ++  L    E  
Sbjct: 3   LIYIVEDDESIREIETIALKNSNYIVSAFENAKEFYKKLDELVPDLILLDVMLPD--ESG 60

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            ++ R +R       +P+I ++   +    +   D G DD + KP    E++ RV A+ R
Sbjct: 61  YDIVRKLRKRPATQDIPIIMVTAKTTEMDMIKGLDGGADDYIKKPFSIMELITRVKALLR 120

Query: 118 RLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R      +  +   + +  +     V  E   L  +E  +L  LM ++G  + +  I  +
Sbjct: 121 RTAKEEPKLLKLDDLVIDHERHVVTVNNEPVDLTYKEYELLRLLMGSQGIVMTREVIMRS 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   D   E   V+ HI  LR KL +      + + R +GY I+
Sbjct: 181 VWDT-DFEGETRTVDMHIKTLRHKLGDYGS--RIKTVRNVGYVIE 222


>gi|240142635|ref|YP_002967148.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
 gi|240012582|gb|ACS43807.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
          Length = 220

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ DG  A  G  G ++E   +    +   +++R  V  ++  L       L
Sbjct: 3   ILVVEDDPILSDGLRAGLGLSGATVECVGTCADADAALATSRFGVVVLDLMLPD--GSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +R      P++ ++   ++   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVLRGLRRRDDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   E G IR+   G    V G   P+ RRE  +L  LM       +KT++   +YG
Sbjct: 121 GRASAGLEHGGIRLDPAGLVVTVDGVNVPVSRREFMVLAALMERPNVLRSKTELEERLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E VE N VE H+  LR K+    G   +++ R +GY +
Sbjct: 181 -WQEEVESNAVEVHVHNLRAKI----GKQAIETVRGVGYRM 216


>gi|218886726|ref|YP_002436047.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757680|gb|ACL08579.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 275

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G   E          +    R D+  ++  L   G+  L
Sbjct: 7   ILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLP--GDDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R +RA S++P+I ++        +   + G DD V KP + RE++AR+  + RR + 
Sbjct: 65  TLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRARA 124

Query: 121 -----------VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
                        +         + +         G V  L   E R+L + +    + +
Sbjct: 125 LPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRVM 184

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++ Q+     G   EA +   ++  +S+LR +LR+       + + R  GY +
Sbjct: 185 SRDQLLDLTQGRAAEAFD-RSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYL 236


>gi|313829791|gb|EFS67505.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|315109590|gb|EFT81566.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
          Length = 243

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  +   NS         + R DV  ++  L       LE
Sbjct: 21  LVIEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDF--DGLE 78

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR     V  + ++   +    +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 79  VMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSGA 138

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +       G + +  D R+    GE   L   E  +L Y M N  + ++K QI   +
Sbjct: 139 TEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDRV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ ++     + + R  GY +
Sbjct: 199 WN-YDFRGQANVVELYISYLRKKI-DRGHKPMIHTMRGAGYVL 239


>gi|196032134|ref|ZP_03099548.1| transcriptional regulatory protein VanRB [Bacillus cereus W]
 gi|218904325|ref|YP_002452159.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus cereus AH820]
 gi|195994885|gb|EDX58839.1| transcriptional regulatory protein VanRB [Bacillus cereus W]
 gi|218538575|gb|ACK90973.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus cereus AH820]
          Length = 220

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  ++   + +            +  ++  L   G    
Sbjct: 5   ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLP--GMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+ N G+ ++   I S ++G +
Sbjct: 123 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL +    + + + R +GY ++
Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLE 217


>gi|154507667|ref|ZP_02043309.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797301|gb|EDN79721.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC
           17982]
          Length = 225

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +      G +G  +    +    E L      D+  ++  L       L+
Sbjct: 5   LLVEDDPAISEPLARALGREGYDVRAHAT--GAEALADVRGVDLVVLDLGLPD--MDGLD 60

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           + R IR+    VP++ ++        +   D+G DD V KP    E+LARV A+ RR   
Sbjct: 61  VAREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +          IR+        V      L  +E  +L  L+   G  VA+  +   ++G
Sbjct: 121 EPVEGELRAQDIRMDVAAHRAFVGDVELSLTAKEFDLLRVLLREAGSVVARDTLMREVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
             D       ++ H+S LR+KL  +      + + R +G+  +
Sbjct: 181 -SDPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRFE 222


>gi|119896995|ref|YP_932208.1| DNA-binding response regulator CreB [Azoarcus sp. BH72]
 gi|119669408|emb|CAL93321.1| two-component system regulatory protein [Azoarcus sp. BH72]
          Length = 235

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G   +      +    L+  A   +  ++  L  +    
Sbjct: 5   ILIVDDEPAIADMLAYALRTEGYEPDCVGLGGDALAALRGGADYALVILDVGLPDQ--SG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ R +R  S VP+I ++        +   + G DD V KP   RE+ +RV AI RR +
Sbjct: 63  FDVCRALRRESDVPVIFLTARSDEVDRIVGLELGADDYVPKPFSPREVASRVRAILRRAR 122

Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                          + P    + G      G    L R E R+L  L+   G+  ++ Q
Sbjct: 123 PQPAAVAPAPAAETCSAPFHHDAAGARIAYHGVWLSLTRYEYRLLATLLDRPGRVQSRAQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           + + ++   ++++E   V++HI  LR KLR      DP+++ R LGYS+
Sbjct: 183 LMADVWRDAEDSLE-RTVDAHIKTLRAKLRAVREDEDPIETHRGLGYSL 230


>gi|302521034|ref|ZP_07273376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429929|gb|EFL01745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 264

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 19/230 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G  +              +   D++ ++  +   G   + 
Sbjct: 40  LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVP--GMDGVS 97

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 98  LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 157

Query: 123 N------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                             G + V ++G +    GE   L   E R+L    A  G  +++
Sbjct: 158 GGGARQAVEEEAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVLSR 217

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 218 DRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 262


>gi|239980291|ref|ZP_04702815.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291452155|ref|ZP_06591545.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355104|gb|EFE82006.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 239

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 97/241 (40%), Gaps = 34/241 (14%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++         G  +    +G + LE         R D++ ++  +   G 
Sbjct: 8   LFVEDDDVIREATQLALERVGFRVTAMPDGLSGLEAFRAD----RPDIALLDVMVP--GM 61

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 62  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRR 121

Query: 119 LKV-------------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
                                 ++     G + + ++G      G    L   E R+L  
Sbjct: 122 FGHAAGAQGARAEEEPSGGPAEADGLLRFGDLELDTEGMVVRRAGSPVALTPTEMRLLLE 181

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             A  G  +++ ++   ++  +    +  VV+ H+ +LR K+    G + +++ R  GY 
Sbjct: 182 FSAAPGTVLSRDKLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQERIETVRGFGYK 236

Query: 220 I 220
           +
Sbjct: 237 L 237


>gi|192361000|ref|YP_001982278.1| abfR arabinofuranosidase two component system response regulator
           [Cellvibrio japonicus Ueda107]
 gi|190687165|gb|ACE84843.1| abfR arabinofuranosidase two component system response regulator
           [Cellvibrio japonicus Ueda107]
          Length = 232

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +         ++G +++  +  +    L   A   +  ++  L  +     
Sbjct: 4   ILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVR--SGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +I+R HSQ P+I ++        +   + G DD + KP   RE++AR+ AI RR  +
Sbjct: 62  DVLKILRQHSQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRRASI 121

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +        R  +G + +    R      +   L   E  +LE L+   G+ ++K  +  
Sbjct: 122 AEANQPNVERLTSGKLSLHLGTRTATWDNQDVVLTGTEFSVLEILVRRAGQVISKDDMTE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
                     +   ++ H+S +RKK+       D + + R  GY +  N
Sbjct: 182 QALNRKLTPYD-RSIDVHVSNIRKKIALAGSTKDLIINVRGAGYMLTLN 229


>gi|56540577|gb|AAV92742.1| PmrA [Escherichia coli]
          Length = 222

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  G+ +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIPTVRGFGFMLVAN 219


>gi|26989626|ref|NP_745051.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|148547998|ref|YP_001268100.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|24984509|gb|AAN68515.1|AE016483_6 DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|148512056|gb|ABQ78916.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|313499075|gb|ADR60441.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 226

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 6/219 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D A+     +A     G+ ++  ++         +   D+  ++  L       L + 
Sbjct: 7   IEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIAGGYDLITLDRMLPEV--DGLTIV 64

Query: 65  RIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121
             +R      P++ IS    +   +    +G DD + KP    E+ ARV  + RR  V  
Sbjct: 65  TTLRNLKIATPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPT 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  R +   +++     +         L   E ++LEYLM + G+ + +  IF  ++G +
Sbjct: 125 TQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 N+++ HI +LRKK+ +      + + R  GY+I
Sbjct: 184 HFDPGTNLIDVHIGRLRKKIDSPGQSPLIRTVRGSGYAI 222


>gi|313200176|ref|YP_004038834.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. MP688]
 gi|312439492|gb|ADQ83598.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. MP688]
          Length = 268

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 98/223 (43%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D     +       + G   +  +     + +  +   D+  ++  L    G ++
Sbjct: 45  ILVVEDEHKTGEYLRKGLTEAGFVTDLVHDGLDGQHMALAEHYDLIILDVMLPRASGWQI 104

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   A    P++ ++    ++  +   + G DD + KP    E+LAR+  + RR +
Sbjct: 105 IAALRE--AGKHTPVLFLTARDLVEDRVKGLELGADDYLVKPFAFSELLARIRTLLRRGR 162

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  +   + +    R  +  G+   L  +E  +LE L+  RG+ ++++ I S ++ 
Sbjct: 163 TREADVLQVANLEIDVLRRRVQRDGKKIELTAKEFGLLELLVRRRGEVLSRSLIASQVWD 222

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +   + NV+E  + +LR K+ +      + + R +GY +D 
Sbjct: 223 M-NFDSDTNVIEVAMRRLRAKIDDPFEPKLIHTVRGMGYVLDV 264


>gi|182413658|ref|YP_001818724.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840872|gb|ACB75124.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 216

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 105/222 (47%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +   G++G +++G ++     +   S   D   ++  L        
Sbjct: 3   LLVVEDDPDLLANLLKALGEEGYAVDGADTGPEGLFKAESWDYDAIVLDVMLPE--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
            L + +R   + P++ ++   + Q  +   D G DD + KP    E+ AR+ A+ RR   
Sbjct: 61  TLLQRLRRTKRTPVLMLTARDATQDRVRGLDIGADDYLTKPFDLPELCARLRALIRRSCG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + R   G + +    R    +G   PL   E  ++E+L  +RG+ V++T ++  +   
Sbjct: 121 EVHPRLALGDLVIDQTARTVTCKGATVPLTATEYALIEFLALHRGQVVSRTTLYEHL--- 177

Query: 181 FDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FDEA +   N+++ H++ +R+K+    G D + ++R  GY I
Sbjct: 178 FDEAHDSLSNLLDVHVAHVRRKI----GRDVIVTRRGHGYLI 215


>gi|85715372|ref|ZP_01046354.1| Two-component transcriptional regulator, winged helix family
           protein [Nitrobacter sp. Nb-311A]
 gi|85697793|gb|EAQ35668.1| Two-component transcriptional regulator, winged helix family
           protein [Nitrobacter sp. Nb-311A]
          Length = 230

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D  +  F + G   E     E    L      DV  I+  L  +    L
Sbjct: 3   LLIIEDDRESADYLVKAFREVGHVAELAGDGEEGLSLADGGDYDVLVIDRMLPKR--DGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +R    Q P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SVIGCLRDKGIQTPVLILSALGQVDDRVKGLRAGGDDYLPKPYSFAELLARVEVLSRRHV 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +           E   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 GRAEETVYRVGDLELDRLSHRVVRGVEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIDKGFEQPLLHTIRGAGYMI 221


>gi|148547951|ref|YP_001268053.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148512009|gb|ABQ78869.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 219

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       DDG +++    L+       S   D+  ++  L     + L+
Sbjct: 4   LLVEDAPGLGEAVREQIADDGHAVDWVQRLDHARNSVRSTPYDLILLDLMLPD--GRGLD 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R  RA   V P+I ++    +   +   ++G DD + KP    E+ ARVAA+ RR   
Sbjct: 62  FLRQQRAAGDVTPVIILTAQDQISDRIAGLNAGADDYLVKPFDLFELSARVAAVGRRYSG 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N +   G ++V    R  +       L  RE  + E  +      ++K+Q+   +Y  
Sbjct: 122 NPNPQIRLGDLQVDMSARTVQRGSATVDLTAREWALFEAFVQRPSALLSKSQLEERLY-A 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F   +E N +E +IS+LRKKL    G + +++ R +GY +
Sbjct: 181 FGAEIESNTIEVYISRLRKKL----GRELIETVRGMGYRL 216


>gi|304408471|ref|ZP_07390115.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342556|gb|EFM08406.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E   +++  + ++         +   ++       
Sbjct: 4   LLVVDDDGAIRKLVRHFMETEGYIVE--EAVDGLDAIRKLETFKADLVILDVMMPNMDGY 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R +   +PL+ ++        +  FD G DD V KP    E++ARV A+ +R +
Sbjct: 62  RLCQELRDYYADMPLLMLTAKGETSQKIKGFDLGTDDYVVKPFIPEELVARVKALLKRYR 121

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ ++  + G + +     +  +      LP +E  +L  L +  G+ + + Q+  AI+G
Sbjct: 122 IAVSSSVQIGAVTLNRRTFETLMGDASLSLPPKEFELLFKLASYPGQTLLREQLIEAIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + D    E  ++ HI++LR++         + + R LGY ++
Sbjct: 182 I-DFEGNERTLDVHINRLRERFPEAEAGFRIATVRGLGYRME 222


>gi|294339218|emb|CAZ87572.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As]
          Length = 258

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +     +G +++        +    + + D+  ++  L       +
Sbjct: 3   LLLVEDDVMIGESVLDALRGEGYAVDWVRDGAVADSALRTEQYDLVLLDLGLP--KMDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + +R   +  P++  +   ++   +   D+G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  AVLKALRTRRETTPVLIATARDAVSARIAGLDAGADDYVLKPYDLDELSARIRALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G I +     +  + GE   L +RE  +LE L+A  G  +++ Q+   +Y 
Sbjct: 121 GRAEPVFSYGRISLNPATHEALLDGEPVALSQREWAVLEALIARPGMILSRAQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE +  N VE ++  LRKKL    G D + + R +GY I
Sbjct: 181 WKDE-ISSNAVEVYVHSLRKKL----GPDLIRNIRGMGYMI 216


>gi|322418162|ref|YP_004197385.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124549|gb|ADW12109.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 237

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +   +    +G  ++  +          S       ++  L        
Sbjct: 5   ILIIDDDTGLCELLGSYLASEGYLVDAVHDGAEGVDKAVSRDYAFVVLDVMLPT--LNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR ++QVP++ ++        +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 63  DVLRRIRQNTQVPVLMLTARGDEIDRIVGLEMGADDYLPKPFNPRELVARLRAIQRRSDA 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   +  + G + +    R          L   E  +LE L+   G  +++  + 
Sbjct: 123 FPAGAEPKPDLLQVGDVSLDLGARTVSCANSPVELTSLEFSVLEALVRQAGNVMSRDDLT 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
               G  + +  +  ++ H+S LRKKL     G + + S R +GY
Sbjct: 183 RQALGR-EFSSFDRSIDVHVSSLRKKLGPAAGGEERIKSVRGVGY 226


>gi|226325687|ref|ZP_03801205.1| hypothetical protein COPCOM_03500 [Coprococcus comes ATCC 27758]
 gi|225205811|gb|EEG88165.1| hypothetical protein COPCOM_03500 [Coprococcus comes ATCC 27758]
          Length = 233

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +         G  +++ F+  E     Q   +   S I   L+  G   
Sbjct: 10  ILIVEDDTDINNLLYTALQKAGYETVQAFSGTEARMLFQMD-KAGFSLILLDLMLPGISG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR     P+I ++    L   +    SG DD + KP   +E+LAR+    R ++
Sbjct: 69  EEVLAQIRKQGNTPVIVLTAKDGLDEKIGLLTSGADDYITKPFEIQEVLARIQVQLRHMQ 128

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSAI 177
                       + +  +  +  + G + P + ++E  ILE L+ +  +  +K +IF   
Sbjct: 129 QEPEHKSVSYKNLELDRERFEVRIAGVLLPKITKQEFAILELLLEHPKQVFSKEEIFEYA 188

Query: 178 YGLFDEAVEENVVESHISKLR-KKLRNKLGFDPVDSKRFLGYSI 220
           +       E   ++ HIS +R KK++     + +D+   +GY +
Sbjct: 189 WDEH-YMGETKTLDVHISNIRKKKIKAVTQEEYIDTVWGIGYRL 231


>gi|312877360|ref|ZP_07737325.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795834|gb|EFR12198.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 234

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
            ++DD   + D         G +++ F + E        +  D+  ++  L        E
Sbjct: 7   YVVDDEKDILDLVSEYLIQKGYAVKTFENGESFLEEFGKSEPDIVILDIMLPD--IDGYE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IR +S VP+I +S        +   + G DD ++KP    E+ AR+  I RR+  S
Sbjct: 65  ICKRIRKNSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRRVNKS 124

Query: 123 ----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +N  E   I+V  + R+    G    L  +E      L+    K + ++ I   I+
Sbjct: 125 PIKQDNVIEMFGIKVDFNQRNVFYNGTQIELSPKEFETFALLLKESTKVLKRSYILERIW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G      +E +V+  I +LRKK+        + +   LGY ++
Sbjct: 185 GDP-ALYDERMVDDVIKRLRKKILQYNLPVEIKTMWGLGYKLE 226


>gi|228958286|ref|ZP_04120012.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801367|gb|EEM48258.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 229

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 4   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLP--GINGL 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  + ++ +I ++     +  +     G DD + KP     + AR+ ++ RR++
Sbjct: 62  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 121

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|225028056|ref|ZP_03717248.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353]
 gi|224954656|gb|EEG35865.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353]
          Length = 245

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 90/230 (39%), Gaps = 17/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++I+D   V +        D + +  F        E  LQ + + D+  I   L+    
Sbjct: 4   ILIIEDERAVAE-----LERDYLEINSFKVSIEETGEGGLQRALKGDIDLIILDLMLPDM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R +R    +P++ +S   S    +     G DD + KP    E++ARV A   R
Sbjct: 59  DGFEICRELRHRIDIPILIVSAKKSDIDKIRGLGIGADDYITKPFSPNELVARVKAHLNR 118

Query: 119 LKV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N   E   +++    R   V  E      +E  +L YL  +     +K 
Sbjct: 119 YIRLTRKRIDVNEYIEYPGLKIDKSARRVFVNEEERFFTTKEFDLLTYLATHPNHVFSKD 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           ++FSA++G+ D   E   V  HI K+RKK  N       +++    GY  
Sbjct: 179 ELFSAVWGM-DSMGEIATVTVHIKKIRKKTENANVKSGYIETVWGSGYRF 227


>gi|229099979|ref|ZP_04230899.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|228683407|gb|EEL37365.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 214

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 9/219 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D   +++            +   +  +  E ++   ++    I   ++       E+ 
Sbjct: 2   VEDDQEIQELIKQFLMTQQYKVIVAS--DGLEGMKQFNKQSFDLILLDVMMPNLNGFEVA 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122
           ++IR+ S +P+I ++     Q  +  FD G+DD + KP     ++ RV A+ RR   + +
Sbjct: 60  KMIRSQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +N      + V  D     V     PL  +E  IL+ L+ N  K + +  I   I+G ++
Sbjct: 120 DNHFVFRELHVNGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            A +  ++++H+  +RKKL        + + + +GY ID
Sbjct: 179 YAGDTRMIDTHMKNIRKKLD----IPYIKTVKGIGYKID 213


>gi|153854777|ref|ZP_01996011.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814]
 gi|149752684|gb|EDM62615.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814]
          Length = 231

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + + EE L+   +  V  +   ++      +
Sbjct: 4   ILVCDDDKEIVEAIEIYLSQEGYKV--LKAYDGEEALKLLDKHKVDLLIIDVMMPRLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +   + G DD + KP +  E+ ARV +  RR   
Sbjct: 62  RATLKIREKQNMPIIILSAKSEDADKILGLNVGADDYMTKPFNPLELTARVKSQLRRYTQ 121

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +  E         G + +  D ++  V GE   L   E  IL  L+ N+GK  +  QI
Sbjct: 122 LGSTVEKENQAVYTVGGLMIDDDQKEITVDGEPVKLTPIEYNILLLLVKNQGKVFSIDQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +I+   D    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 182 YESIWNE-DAIGVDNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIE 229


>gi|37519850|ref|NP_923227.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210841|dbj|BAC88222.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 230

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +              ++     +      +S   DV  ++  L        
Sbjct: 4   ILLAEDDERIAIPLAEDLTHQHYLVDVAADGKAAWHYATSYHYDVLLLDVMLPE--IDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R A  + P++ ++        +   DSG DD + KP    E+ ARV A+ RR  
Sbjct: 62  ALCRRLREAGYEQPILMLTALDRTTDRVAGLDSGADDYLVKPFSLEELGARVRALLRRSG 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +     + GP+ +          G    L  +E R+LE L+ + G+  ++  +   ++ 
Sbjct: 122 PTRGPVLKAGPLSLDPLMLQATYGGLPVHLTPKEYRLLECLLRHPGQIFSREMLLDRLWE 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221
                 ++  V++ + +LR+KL+      D + +    GY  +
Sbjct: 182 PAHAGGDD-AVKALVLRLRRKLQEAGAPQDLLKTVHGFGYCFN 223


>gi|333011380|gb|EGK30794.1| transcriptional regulatory protein creB [Shigella flexneri K-272]
 gi|333012275|gb|EGK31657.1| transcriptional regulatory protein creB [Shigella flexneri K-227]
          Length = 229

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVCSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V+ HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDIHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|295707307|ref|YP_003600382.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294804966|gb|ADF42032.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 227

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   +         ++G  ++          +    +  ++ ++  L   G    E
Sbjct: 10  LLIDDEPTILQFLSLGLTNEGFDIKATQDGIEGINVAKEFKPHIAIVDVMLP--GMDGFE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+++    + +I ++    +   +     G DD + KP    E+LAR+ A   R +  
Sbjct: 68  VCRLLKKMGNIAVIMLTAKDQVDDRVKGLTIGADDYMVKPFSFEELLARIQARI-RNQFP 126

Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           N  +    GP ++    ++ +    +  L   E  +L++L+ N G  ++K+ I   ++G 
Sbjct: 127 NLLDEVSIGPFKIDDRRKEIKYLNHILDLSPTEYALLKFLVINHGLVLSKSTILDRVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   EEN+VE +I  LR+KL++      + + R +GY ID
Sbjct: 186 YDFGGEENIVEVYIRSLREKLQD-YSRTVIRTLRGVGYRID 225


>gi|262372418|ref|ZP_06065697.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262312443|gb|EEY93528.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 219

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D A   +        DG S++     +           D   ++  L        
Sbjct: 3   ILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVKQHHYDCILLDRGLPNA--SGD 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR     +P+I I+    +   ++  D G +D + KP +  E+ AR+ A  R+ +
Sbjct: 61  DILKRIREQHLLIPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARIRAQLRQFQ 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      +++  + +     GE   L  +E +IL  LM N    V + Q+  ++Y 
Sbjct: 121 KQTGAYLCFADLKLDPNAKTVLKAGETVNLTAKEFQILYKLMQNPNHIVTREQLEESLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E +E N +E  I ++RKK+    G   + + R LGY ++
Sbjct: 180 AWGEEIESNAIEVFIYQIRKKI----GSQLIKTIRGLGYRMN 217


>gi|260902480|ref|ZP_05910875.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ4037]
 gi|308109776|gb|EFO47316.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ4037]
          Length = 230

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 101/237 (42%), Gaps = 27/237 (11%)

Query: 2   FVLIDDR---------ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++++D           L++ GY+     DG  ++G        +  +S   D+  ++  
Sbjct: 3   ILIVEDEHKAGEYLQKGLIESGYVVDLVHDG--VDGL-------YHATSEEYDLILLDIM 53

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L        ++   +R+     P+I ++    ++  +  F+ G +D V KP    E+LAR
Sbjct: 54  LP--KLDGWQVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLAR 111

Query: 112 VAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           V  ++R      +  S        + +    R     G+   L  +E  +LE LM   G+
Sbjct: 112 VQNVFRHHIAAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQ 171

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +++T I S ++ + +   + NV++  + +LR K+        + + R +GY ++ +
Sbjct: 172 VLSRTTIASLVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLEES 227


>gi|168202297|ref|ZP_02629867.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298694|gb|EDS80773.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 229

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 106/227 (46%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +    +   +G  + + F+  E +  L+     D+  ++  L G   ++
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFF-DFDMVLLDLMLPGITGEI 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                 IR     P+I IS   +++  ++    G DD ++KP    E+LARV A+ RR K
Sbjct: 66  F--IEEIRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSK 123

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           ++N      + +   + +    R+ +V+GE   L  +E +ILE L+ N  K   K  +F 
Sbjct: 124 ITNSSEGVEKIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   +   ++N +  HIS LR K+       D + +   +G+ +D
Sbjct: 184 TVW-EEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKMD 229


>gi|167901468|ref|ZP_02488673.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
          Length = 247

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       +  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 219


>gi|110798796|ref|YP_695638.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168206916|ref|ZP_02632921.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209543|ref|ZP_02635168.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213967|ref|ZP_02639592.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215963|ref|ZP_02641588.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|110673443|gb|ABG82430.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170661678|gb|EDT14361.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712327|gb|EDT24509.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714590|gb|EDT26772.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|182381636|gb|EDT79115.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 229

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +    +   +G  + + F+  E +  L+     D+  ++  L G   ++
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFF-DFDMVLLDLMLPGITGEI 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                 IR     P+I IS   +++  ++    G DD ++KP    E+LARV A+ RR K
Sbjct: 66  F--IEEIRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSK 123

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           ++N        +   + +    R+ +V+GE   L  +E +ILE L+ N  K   K  +F 
Sbjct: 124 ITNSSEGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   +   ++N +  HIS LR K+       D + +   +G+ +D
Sbjct: 184 TVW-EEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKMD 229


>gi|311104981|ref|YP_003977834.1| transcriptional regulator QseB 1 [Achromobacter xylosoxidans A8]
 gi|310759670|gb|ADP15119.1| transcriptional regulatory protein QseB 1 [Achromobacter
           xylosoxidans A8]
          Length = 219

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +     +  +++        E    +   D+  ++  L  +    L
Sbjct: 3   ILLVEDDLMIGESVLDFLRAEHYAVDWVKDGNAAELALRTDTYDLILLDLGLPKR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L R +RA     P++  +   ++   +   D+G DD V KP    E+LAR+ A+ RR  
Sbjct: 61  SLLRDLRARKDRTPVLIATARDAVSDRIAGLDAGADDYVVKPYDVDELLARMRALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +        V G    L  RE  +LE L+A  G   ++ Q+   +Y 
Sbjct: 121 GRAEPVFEHEGITIDPQSHAAMVDGTPVTLTAREWAVLEPLIARPGMIFSRAQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E++  N VE +I  LRKKL    G + + + R +GY I
Sbjct: 180 SWKESISSNAVEVYIHGLRKKL----GPNLIQNVRGVGYVI 216


>gi|297623124|ref|YP_003704558.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297164304|gb|ADI14015.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 223

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 13/221 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  +V++         G ++E   +LE  E  +S    D   ++  L       +E
Sbjct: 6   LVVEDEFVVRELIAFHLTQAGFTVEEVGTLE--EAWRSLTGVDAVVLDWMLPD--GSGVE 61

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             R +RA  +   +P++ ++   S +  +   D+G DD + KP    E+ AR+ A+ RR 
Sbjct: 62  WLRRLRATVRGERLPVLMLTARASERDKVFGLDAGADDYLAKPFSSAELTARLRALLRRT 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      + GP+ +        + G    L RRE  +L +L A+ G+  ++T++   ++G
Sbjct: 122 EP-QRVHKVGPLELDERLGVVTLNGRELSLTRREFELLAFLCASPGRVFSRTELLDRVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D    E  V+ HI++LR      +G + +++ R  GY +
Sbjct: 181 E-DFLGTERTVDQHIAQLR----ALVGAELIETVRGRGYRL 216


>gi|291446455|ref|ZP_06585845.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349402|gb|EFE76306.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 240

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + D        +G       +         + R  +  ++  L       ++
Sbjct: 9   LVVDDESYLADLVATALRYEGFETAVAGTGGAAVAQVETFRPHLIVMDVMLPD--GSGID 66

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +R +    P++ ++   + +  +     G DD V KP    E++AR+ A+ RR   
Sbjct: 67  ATRRLRGSGCLAPVVFLTARDATEDKIAGLTVGGDDYVTKPFSLEELIARIRAVLRRTAH 126

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              RA+     + +  D  +    G    L   E ++L YL+A+ G+ ++K QI   ++ 
Sbjct: 127 PAERAKVTFADLEIDDDAHEVRRHGVPVDLTPTEFKLLRYLVAHAGRVLSKRQILDHVW- 185

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D    + VV+++IS LR+K+ +      + +   +GY +
Sbjct: 186 EYDFGGSDAVVQTYISYLRRKI-DVFEPSLIQTVPRIGYVV 225


>gi|163790641|ref|ZP_02185069.1| two-component response regulator [Carnobacterium sp. AT7]
 gi|159874089|gb|EDP68165.1| two-component response regulator [Carnobacterium sp. AT7]
          Length = 233

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEK 59
            +++DD   + D   A        +  F +    E L+     + ++  ++  L      
Sbjct: 3   ILIVDDEPKILDIVEAYLTIKRFQV--FRASNGIEALEKFELVQPNLIVLDLMLPD--IS 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + IR  S VP+I ++   +    L+    G DD + KP   +E++ARV  + RR 
Sbjct: 59  GTVICQKIRKTSDVPIIMLTAKSTENDILNGLQIGADDYIVKPFSPKELVARVETVLRRS 118

Query: 120 KVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             S         + G + ++ + +      +   L   E  +L  L +   K  ++ Q+ 
Sbjct: 119 DSSVVTETKWSFDKGNLVIYPENKQVFKNQKEVILTPTEFELLTLLASYPKKIFSREQLL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             + GL +  V + +++SHI  LR+K+ +       + +   +GY  
Sbjct: 179 ENVKGL-EFDVLDRIIDSHIKNLRQKIEDNTRQPYFILTVYGMGYRF 224


>gi|153952701|ref|YP_001393466.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219853372|ref|YP_002470494.1| hypothetical protein CKR_0029 [Clostridium kluyveri NBRC 12016]
 gi|146345582|gb|EDK32118.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219567096|dbj|BAH05080.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 229

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 17/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++I+D   + +        D + LEGF      E  + L +        +   ++    
Sbjct: 4   ILIIEDDLSIAE-----LQKDYLELEGFEVTICTEGVKGLNTLNNNKFDLLILDIMLPKI 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               + R I+    +P++ +S        +  F  G DD + KP    E++ARV +  + 
Sbjct: 59  NGYSILRSIQDKKDIPVLLVSAKKEEIDKIKGFTLGADDYITKPFSPGELVARVKSHIQN 118

Query: 119 LKV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +         +N+     + +  D R   V G+   L ++E  IL Y+  N  +   + 
Sbjct: 119 YERIKSKFNLKHNKLIIRGLEILKDSRQVFVNGKEITLAQKEFDILLYMAENPNRVFNRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++F  I+GL     +   V  HI ++R+K+         +++    GY +
Sbjct: 179 ELFEKIWGLG-SMGDNATVTVHIRRIREKIEPYPSKPQYIETVWGAGYRL 227


>gi|187927029|ref|YP_001893374.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|187728783|gb|ACD29947.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 244

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 15/228 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-----AIEAFLIGKG 57
           +L++D  ++ D        DG +++     E      ++     +       +  L+  G
Sbjct: 4   LLVEDDDMIGDSVRKGLRHDGFTIDWVRDGEAALHAVTAPGAGGAEAGGTLFDLMLLDLG 63

Query: 58  E---KVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 LE+ R +R    V P++ ++   ++   +   ++G DD + KP   +E+ AR+ 
Sbjct: 64  LPKRDGLEVVRELRQRGIVIPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAARMH 123

Query: 114 AIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           A+ RR    ++     G + +    R+    G    L  RE  +L  L+A  GK  +  Q
Sbjct: 124 ALLRRQGGRADPLLRHGDVVLNPVTREVLRDGVPVKLSGREFAVLHALLARPGKVWSIAQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +YG +DE V  N VE +I  LRKKL    G   + + R +GY I
Sbjct: 184 LQDNLYG-WDEEVGSNTVEVYIHALRKKL----GSHLIQNIRGVGYVI 226


>gi|110806919|ref|YP_690439.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 5
           str. 8401]
 gi|110616467|gb|ABF05134.1| QseB [Shigella flexneri 5 str. 8401]
 gi|332752697|gb|EGJ83082.1| transcriptional regulatory protein qseB [Shigella flexneri K-671]
          Length = 210

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 9/213 (4%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+ DG        G S++ F      +    SA  D   ++  L   G    ++ R  R 
Sbjct: 2   LIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGRDILREWRE 59

Query: 70  HSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAE 127
             Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR    ++N   
Sbjct: 60  KGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELR 119

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y  +DE V  
Sbjct: 120 HGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY-TWDEEVTS 178

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N VE H+  LR+KL    G D + +   +GY++
Sbjct: 179 NAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 207


>gi|254293644|ref|YP_003059667.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254042175|gb|ACT58970.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 223

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D    +  + G  +   N  E    L  +  ++  A+    +      +E
Sbjct: 4   LVIEDDIEAADFVRKVLSEAGHDVAVENDGEA--GLSRAQSDEFDAMVVDRMMPKMNGIE 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           +    R      P + ++    ++  ++   +G DD + KP    E++ARV A+ RR   
Sbjct: 62  MLTTYRDTGGNTPALFLTALGDVENRVEGLKAGGDDYLCKPFAPSELIARVEALGRRASS 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    + + G + +    R          L  RE R+LE+LM N  + V +T +   ++ 
Sbjct: 122 EAPTTKLQVGDLVMDLLARTVFRGEVKIDLQPREFRLLEFLMRNADQVVTRTMLLEKVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 182 -YHFDPQTNVIDVHISRLRSKIDKDFEVALLHTVRGAGYRL 221


>gi|27468018|ref|NP_764655.1| putative response regulator ArlR [Staphylococcus epidermidis ATCC
           12228]
 gi|251810848|ref|ZP_04825321.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876146|ref|ZP_06285013.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366617|ref|ZP_06613294.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81842840|sp|Q8CP82|ARLR_STAES RecName: Full=Response regulator ArlR
 gi|27315563|gb|AAO04697.1|AE016747_194 putative response regulator ArlR [Staphylococcus epidermidis ATCC
           12228]
 gi|251805683|gb|EES58340.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295171|gb|EFA87698.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319386|gb|EFE59755.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329729376|gb|EGG65782.1| response regulator ArlR [Staphylococcus epidermidis VCU144]
 gi|329732898|gb|EGG69243.1| response regulator ArlR [Staphylococcus epidermidis VCU028]
 gi|329735341|gb|EGG71633.1| response regulator ArlR [Staphylococcus epidermidis VCU045]
          Length = 219

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +  +++  N  +       S   D+  ++  L       L
Sbjct: 4   ILIVEDEQNLARFIELELTHENYTVDIENDGKVGLDKALSKPYDLYILDLMLPN--INGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  +  P+I I+        +   D G DD + KP    E+LAR+ A+ RR + 
Sbjct: 62  EICRQIRQKTTTPIIIITAKSETYDKVAGLDYGADDYIVKPFDIEELLARIRAVLRR-QP 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   I +  D     V G    L + E  +L  L  NR   + + QI   ++G +
Sbjct: 121 DKDVLDINGIIIDKDAFKVTVNGHQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  VE NVV+ +I  LR KL+       +++ R +GY I
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218


>gi|268609051|ref|ZP_06142778.1| response regulator receiver protein [Ruminococcus flavefaciens
           FD-1]
          Length = 225

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 103/223 (46%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D    +   +  S++             +   D   ++  L   G   +
Sbjct: 3   LLVVEDEVQLADALSEILKRNMYSVDTVYDGVDGLDNALTGVYDCIILDIMLP--GMNGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R  H   P++ ++    ++  ++  D G DD + KP    E+LARV A+ RR  
Sbjct: 61  EVLRNLRQEHINTPVLLLTARSEVEDKINGLDCGADDYLTKPFITGELLARVRALTRRKG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V  +  +   + +  D      +G    L  +E +I+E L++N  + + K +I   I+
Sbjct: 121 EIVDESNLDFNGLTLNKDTCSVIWKGSDVKLSLKEYQIMELLISNPRRILPKERIIEKIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++  VE N +E +IS LRKKL +      + + R +GYS++
Sbjct: 181 G-YESDVEYNNIEVYISFLRKKLASISAPVQIKTARGIGYSLE 222


>gi|238786192|ref|ZP_04630142.1| Transcriptional regulatory protein creB [Yersinia bercovieri ATCC
           43970]
 gi|238712909|gb|EEQ04971.1| Transcriptional regulatory protein creB [Yersinia bercovieri ATCC
           43970]
          Length = 229

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  L++D   + D  I     +G +L  F+  E      ++    ++ ++  L       
Sbjct: 1   MIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALANGPPALAIVDVGLPD--ING 58

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R +     ++P++ ++        +   + G DD + KP   RE+ ARV  + RRL
Sbjct: 59  FELCRRLLVQMPELPVVFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTVLRRL 118

Query: 120 KVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + S   +      + G   +           +V  L R E  +L+ L+    +  ++ Q+
Sbjct: 119 QKSQTLSIPAALHQFGHFTLNEASARVTYHQQVLWLTRYEYLLLKTLLLAPERIFSRQQL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++   +E+ ++  V++HI  LR KLR       P+ + R LGYS+
Sbjct: 179 MDIVWAQAEES-QDRTVDTHIKTLRSKLRMTYDEESPIRTHRGLGYSL 225


>gi|126736726|ref|ZP_01752465.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126713841|gb|EBA10713.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 249

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +   +  G +G  +    + E    +          ++  L   G   LE
Sbjct: 16  LLVEDDTRLAEMVASYLGANGFGVTTAKTGEDGLGVLDDTPFKAVILDINLP--GIDGLE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + R ++A S+ P+I ++        +   + G DD + KP   RE+LAR+ AI RR    
Sbjct: 74  VCRRMKARSETPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAIMRRGQTP 133

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      + G +++       +V G    L   + ++L  L    G+ +++  +  A+ 
Sbjct: 134 TQTVTTPLQFGRLQIDPGSMLAKVDGRSCDLTSHQFQLLLVLARAPGRVLSRELLMDALR 193

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G   EA +   ++ HIS++R ++ +       + + R  GY  
Sbjct: 194 GETLEAFD-RSIDVHISRIRAEIEDDPKNPRRIITVRGAGYVF 235


>gi|172061017|ref|YP_001808669.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993534|gb|ACB64453.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 224

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D A+  +  +      G  ++  ++         SA  D   ++  L   G   L + 
Sbjct: 6   VEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLP--GADGLAIL 63

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
             +R      P++ +S    +   +    +G DD + KP    E+ AR+  + RR + S 
Sbjct: 64  TAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQASG 123

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    GP+ +    R      +  PL   E R+LE++M N G+ + +T +F A++G
Sbjct: 124 VPQQTLLTVGPLELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEAVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ H+ +LRKK+        + + R  GY +
Sbjct: 184 -YHFDPGTNLIDVHMGRLRKKIDPPGAVPIIQTVRGSGYML 223


>gi|26989071|ref|NP_744496.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|148548557|ref|YP_001268659.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|24983899|gb|AAN67960.1|AE016428_8 DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|148512615|gb|ABQ79475.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 222

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D   A     G +++         +   S   D+  ++  L   G   L
Sbjct: 3   LLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLP--GLPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++    RA     P++ ++   S    ++   +G DD ++KP H  E+  R+ A+ RR +
Sbjct: 61  DVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  + E   + +    +     G    L   E R+L Y M +  + ++K+ +   +Y
Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDVQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +   + NV+E H++ LR+KL    G   ++++R  GY
Sbjct: 181 DG-ETERDSNVLEVHVNHLRRKL----GRSVIETRRGQGY 215


>gi|332532103|ref|ZP_08407986.1| transcriptional regulatory protein in two-component regulatory
           system with BaeS [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038444|gb|EGI74888.1| transcriptional regulatory protein in two-component regulatory
           system with BaeS [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 226

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +            + +  +  E   WL+   R  V  ++  L   G+  
Sbjct: 7   ILIVEDEVKLANLMSDFLSSHHFITHQIHHGNEVLPWLE-INRPSVILLDIMLP--GQSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + IR  S VP+I +S        L   + G DD + KP  + E++ARV AI RRL 
Sbjct: 64  IELCKAIRRFSNVPIIMVSAKVEEIDRLLGLELGADDYICKPFSYAELVARVKAILRRLN 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++  E+  +++       + +     L   E ++ + L  N  +  ++  +   +Y  
Sbjct: 124 NASDVTES-TMKLDESSYSVKYKSNSIELTNFEFQLFKPLFNNPNRIYSRDSLMDTMY-A 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
               V    ++SHI KLRKKL      +  + S   +GY  
Sbjct: 182 DQRIVSHRTIDSHIKKLRKKLDEVTQTESVIQSVYGVGYRF 222


>gi|325568587|ref|ZP_08144880.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325157625|gb|EGC69781.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 261

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59
            +L++D   +     +    +G         +    L  Q +   D+  ++  L      
Sbjct: 31  ILLVEDEESLASFIQSELTFEGYGTVWAKDGQEALTLFNQQANAFDLILLDWMLPI--YD 88

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            + + R IR  S +P++ ++        +   D G+DD + KP    E+ AR+  I RRL
Sbjct: 89  GITVARRIRKESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 148

Query: 120 KVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +          N+   G + +       +V GE   L  +E  IL  LM        +  
Sbjct: 149 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 208

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + I+G ++   + NVV+ +I  LR KL        + + R LGY +
Sbjct: 209 LLNEIWG-YEYDGQTNVVDVYIRTLRNKLDVCGKGKMIATVRGLGYVL 255


>gi|310658379|ref|YP_003936100.1| DNA-binding response regulator [Clostridium sticklandii DSM 519]
 gi|308825157|emb|CBH21195.1| DNA-binding response regulator [Clostridium sticklandii]
          Length = 233

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       +    +  F +   +  +    +E +  I   ++       
Sbjct: 6   ILIVEDDKQIADAIEIYMKNQNYGV--FKAHNGQLAIDIFEKEVIHLIIMDVMMPVMDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  S VP+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 64  TAIMKIRQSSTVPIIVLSAKSEDMDKIAGLNIGADDYVTKPFNPMELIARVNSNLRRYVN 123

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++     G I +  + ++  V G        E +IL  LM+N GK  +  +
Sbjct: 124 FSMKKESDKNSKLISIGDIALDDERKEISVLGAPVKTTPIEYKILYLLMSNAGKVFSIDE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++     + +   V  HI ++R+KL  N      +     +GY  +
Sbjct: 184 IYEKVWNEPAYSPD--TVAVHIRRIREKLEINPKEPKYLKVVWGIGYKFE 231


>gi|300172681|ref|YP_003771846.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887059|emb|CBL91027.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D  I  F +D   +   N+    E+    +  D+   +  L   GE   
Sbjct: 7   ILLIEDDVNLADN-IVGFLEDFADVNVVNNGLDGEFEGQESPYDLIISDLMLP--GENGF 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R +  + P++ ++   SL   ++ F+ G DD + KP +  E+L RV A+ RR  
Sbjct: 64  EVIKYLRKNGIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRAG 123

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V   +N    G + +  + R  +V G+   L  +E  IL YL  N+   V + QIF  ++
Sbjct: 124 VYSEDNMIAVGDVLINLENRGVQVHGQQIKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D     NVV  +++ LR+KL +    D + + R +G+ ++ 
Sbjct: 184 GI-DSDTTINVVNIYLNNLRRKLESVGQNDLIKTLRNIGFILEV 226


>gi|153839375|ref|ZP_01992042.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ3810]
 gi|149747097|gb|EDM58085.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ3810]
          Length = 230

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 101/237 (42%), Gaps = 27/237 (11%)

Query: 2   FVLIDDR---------ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++++D           L++ GY+     DG  ++G        +  +S   D+  ++  
Sbjct: 3   ILIVEDEHKAGEYLQKGLIESGYVVDLVHDG--VDGL-------YHATSEEYDLILLDIM 53

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L        ++   +R+     P+I ++    ++  +  F+ G +D V KP    E+LAR
Sbjct: 54  LP--KLDGWQVLNTLRSSGINTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLAR 111

Query: 112 VAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           V  ++R      +  S        + +    R     G+   L  +E  +LE LM   G+
Sbjct: 112 VQNVFRHHIAAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQ 171

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +++T I S ++ + +   + NV++  + +LR K+        + + R +GY ++ +
Sbjct: 172 VLSRTTIASLVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDRPLIHTVRGMGYKLEES 227


>gi|312140596|ref|YP_004007932.1| two component system response regulator [Rhodococcus equi 103S]
 gi|311889935|emb|CBH49252.1| putative two component system response regulator [Rhodococcus equi
           103S]
          Length = 218

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A    +G ++              +   D+  ++  L   G   LE
Sbjct: 2   LVVDDEHTISESIAARLRAEGYAVRTAFDGPSAVTECETFGPDLVVLDVMLP--GFDGLE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R I+A   VP++ ++        +     G DD + KP   R ++AR++A+ RR   +
Sbjct: 60  VCRRIQASRAVPVLMLTARADETDLVIGLGVGADDYLGKPFSMRVLVARISALLRRADRT 119

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G + +    R     G    L R E  +L +L +     +A+  +   ++G 
Sbjct: 120 TDSDVLVLGDVSIDLSARLVRSAGIEVHLTRTEFDLLAHLASRPRAAIAREILLEQVWGW 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D       V+SH+  LR+KL    G D + +   +GY+++ 
Sbjct: 180 GD-GASSRTVDSHVKALRRKL----GGDVIRTVHGVGYALEV 216


>gi|167737322|ref|ZP_02410096.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei 14]
          Length = 239

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 180 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 219


>gi|710006|dbj|BAA06476.1| ycbL [Bacillus subtilis]
          Length = 226

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 11/225 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + +        +G  +      E    L      D+  ++  L       ++ 
Sbjct: 2   LVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLP--KLNGMDF 59

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
            +IIR  S +P++ IS              G DD + KP    E+ ARV A  RR     
Sbjct: 60  LKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119

Query: 123 ------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N       + +  D       GE   L   E ++L    +N  K   K QI+ +
Sbjct: 120 AEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKDQIYRS 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++   +   ++N++  H+ +LR+K+ +       + +   +GY +
Sbjct: 180 VWNE-EYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223


>gi|258514614|ref|YP_003190836.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778319|gb|ACV62213.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 228

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +       ++G  +  F +    E L+     ++  I   ++      L
Sbjct: 3   ILVCDDDKTIVEAIEIYLENEGYKI--FKASNGIEALELIEGNEIHLIIMDIMMPKMDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
                IR    +P+I +S        +   + G DD + KP +  E++AR+ +  RR   
Sbjct: 61  RATMKIREEKNIPVIMLSAKSEDTDKIIGLNLGADDYITKPFNPLELIARIKSQLRRFTI 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              L+  +N   TG + +  + +   V G+   L   + +IL+ L AN G+  +  +I+ 
Sbjct: 121 LGSLESKSNVYSTGGLAIDDESKIITVDGDEIHLTPVQYKILKLLTANAGRVFSIDEIYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++     + E N V  HI K+R+K+  N      +     +GY ++
Sbjct: 181 KVWNETAFSPE-NTVAVHIRKIREKIEINPKEPKYLKVVWGIGYKVE 226


>gi|322389092|ref|ZP_08062657.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321144228|gb|EFX39641.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 224

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +    + L      S++     +        ++ DV   +  +       L 
Sbjct: 4   LVIEDEVDLNRSIVKLLKTQQYSVDAAYDGQEALDYIRVSQYDVIISDIMMPQ--LDGLG 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R H  + P++ ++   SL+  +   D+G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLSYLRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRRNNR 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N  N  + G   +    +  + +G +  L  +E  +LE L+ +    +++ QI   I+ 
Sbjct: 122 ENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   E N+++  +  +RKKL N      + +KR +GY  
Sbjct: 182 -FDYVGESNIIDVLVKNIRKKLGNP---SIIQTKRGMGYVF 218


>gi|319902736|ref|YP_004162464.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
 gi|319417767|gb|ADV44878.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
          Length = 229

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 106/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + +       ++G  +E  NS E    +      D+  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVETANSAEEALKM-DIGNYDLLLLDIMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE+ ARV A+ RR +
Sbjct: 65  ASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRRTQ 124

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +       +     + +    +   + GE  PL ++E  IL  L+ N+G+  ++  I S
Sbjct: 125 QAEAEQIPEQIIYQSLVLDIIKKKVSIDGEEAPLTKKEFEILLLLLQNKGRVFSREDILS 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+   +  V +  ++ +I++LRKK+   +    + ++   GY  +
Sbjct: 185 RIW-SDEVYVLDRTIDVNITRLRKKIG--IYGKCIVTRLGYGYCFE 227


>gi|148557410|ref|YP_001264992.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502600|gb|ABQ70854.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 225

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V D       + G  +E            ++   DV  ++  L       L+
Sbjct: 4   LLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQV--DGLK 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           + + IRA     P++ +S    +   +    +G DD + KP    E++ARV A+ RR   
Sbjct: 62  ILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGPA 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +G + +   GR     G    L +RE RILEYL+ + G+ V ++ +   ++ 
Sbjct: 122 IAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   + N+++ H+S+LR+KL        +++ R  GY +
Sbjct: 182 -YNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYVV 221


>gi|306827976|ref|ZP_07461243.1| two component response regulator [Streptococcus pyogenes ATCC
           10782]
 gi|304429895|gb|EFM32937.1| two component response regulator [Streptococcus pyogenes ATCC
           10782]
          Length = 228

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR++AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARISAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|326792334|ref|YP_004310155.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543098|gb|ADZ84957.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   V          +G  +   F+ LE  + L  S   ++  ++  L  K    
Sbjct: 4   ILIIEDNKDVNLLLKETLISEGYEVISAFDGLEGTK-LAKSGEFNLILLDIMLPYK--SG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR    VP+I +S    + T +D    G DD + KP    E+ ARVA   RR  
Sbjct: 61  DEILKEIRTWGDVPVIILSAKDMVGTKIDLLKLGADDYITKPFDLGEVAARVAVQLRRAH 120

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                AE      + V  + +   V G+   L  +E  +LE L+ N  K  +K  I+ A+
Sbjct: 121 KQMKEAEVLSYKDLIVEKEDKRVTVNGQEVELTAKEYSMLELLLNNPNKVFSKANIYEAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   +   ++N V++H+S LR KL+      + +++   LGY +
Sbjct: 181 WNE-EYLGDDNAVKTHMSNLRSKLKKVNAEAEYIETVWGLGYRL 223


>gi|325675782|ref|ZP_08155466.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325553753|gb|EGD23431.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 218

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A    +G ++              +   D+  ++  L   G   LE
Sbjct: 2   LVVDDEHTISESIAARLRAEGYAVRTAFDGPSAVTECEAFGPDLVVLDVMLP--GFDGLE 59

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R I+A   VP++ ++        +     G DD + KP   R ++AR++A+ RR   +
Sbjct: 60  VCRRIQASRAVPVLMLTARADETDLVIGLGVGADDYLGKPFSMRVLVARISALLRRADRT 119

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             ++    G + +    R     G    L R E  +L +L +     +A+  +   ++G 
Sbjct: 120 TDSDVLVLGDVSIDLSARLVRSAGIEVHLTRTEFDLLAHLASRPRAAIAREILLEQVWGW 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            D       V+SH+  LR+KL    G D + +   +GY+++ 
Sbjct: 180 GD-GASSRTVDSHVKALRRKL----GGDVIRTVHGVGYALEV 216


>gi|284037811|ref|YP_003387741.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817104|gb|ADB38942.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 230

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 97/226 (42%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +    ++     +    +  +   DV  ++  L        
Sbjct: 8   ILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLP--KMNGF 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + IR      P++ ++   S+   L  F++G DD + KP   RE++AR+ A+ +R  
Sbjct: 66  DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +  N  +   + +  + +      +   L  +E  +L+YLM NRG+ V++  I   +
Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + +       NV++ +++ LRKK+        + +   +GY +  +
Sbjct: 186 WDIH-FDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLKED 230


>gi|49081818|gb|AAT50309.1| PA2809 [synthetic construct]
          Length = 227

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G +++  +     E L      D+  ++  L   G    
Sbjct: 3   LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLP--GRDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R +R A   VP++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     +   + +    R  + QG+   L  +E  +LE L+   G+ + K+ I S ++
Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +        + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLTHTVRGMGYVLE 222


>gi|152974334|ref|YP_001373851.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023086|gb|ABS20856.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 86/224 (38%), Gaps = 14/224 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +LIDD   +           G     +  GF +LE    L      D+  ++  +    
Sbjct: 4   ILLIDDEERMLQLLDLFLSPRGYFCMKAKSGFEALE----LVQQKEFDIILLDVMMPN-- 57

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E  + IR  S VP+I ++        +     G DD + KP   + ++AR+ A+ R
Sbjct: 58  MDGWETCKQIRQLSNVPIIMLTARNQNYDMIKGLTIGADDYITKPFDEQVLVARIEAVLR 117

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R K          I          V  E   L   E  +L   + N  +  ++  +   I
Sbjct: 118 RTKK-EGFVSFNGIEWDKMKHTVTVYNEKISLTPIEFALLGLFLQNVNRAYSRDDLIEKI 176

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +G +   +E   V+SHI  +R+KLR K     + +++   +GY 
Sbjct: 177 WG-YQTDIEYRTVDSHIRNIREKLRKKGFPVENYLETIYKVGYK 219


>gi|323494536|ref|ZP_08099641.1| two-component system response regulator QseB [Vibrio brasiliensis
           LMG 20546]
 gi|323311263|gb|EGA64422.1| two-component system response regulator QseB [Vibrio brasiliensis
           LMG 20546]
          Length = 219

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +      G   E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDEPRLGEQIVESLEQTGWVPELSQDGIDALYRATSEEWDAIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E+ AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGNLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+  K     + + R LGY ++
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKIAPK----VIKTVRGLGYQLN 217


>gi|319793996|ref|YP_004155636.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315596459|gb|ADU37525.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 243

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD A ++D        +G  +      +     +   R+ V  I   L+  GE  L
Sbjct: 11  IVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALN--RILLRDTVDLIVLDLMMPGEDGL 68

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +RA +   P+I ++        +   + G DD + KP + RE+LARV A+ RR  
Sbjct: 69  SVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRP 128

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     GP       R  +  GE   L   E  +L+ L+ +  + +++ 
Sbjct: 129 PLEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  IS+LRK +  +      + +   +GY  
Sbjct: 189 KLAQLARGR-EFEPFDRSLDVQISRLRKLVESDAAAPRYIQTVWGVGYVF 237


>gi|307822689|ref|ZP_07652920.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307736293|gb|EFO07139.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 225

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 108/221 (48%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +     F D G +++  ++ +   ++      D + I+  L       +
Sbjct: 3   ILVVEDEVKLCEQIQQFFADKGFAVDTAHTGQDGYYMGKEYPIDAAVIDIGLPDF--SGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL + +R     VP++ ++     Q  ++  ++G DD + KP H+ E+ AR+ A+ RR  
Sbjct: 61  ELIKRLRKDKVTVPILILTARSRWQEKVEGLEAGADDYLVKPFHYEELQARINALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V++       I + +  ++  V G    L   E ++LEYLM  +G+ V+K+ + + IY 
Sbjct: 121 GVAHPVLTHDNIELDTVAQEVTVSGVKQELTAYEYKVLEYLMFRKGEVVSKSVLTAHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + NV+E  I +LRKKL       P+++ R  GY I
Sbjct: 181 E-DFDRDSNVLEVFIGRLRKKLDPDGTRKPIETLRGRGYLI 220


>gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
 gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
          Length = 228

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +  S++   + + EE ++         I   L+       
Sbjct: 4   ILIIEDEKKIRRYLQLELEHEKYSVD--TAQDGEEGIEKFKNNFYDIILLDLMMPKFSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR  S +P+I ++        ++  D G DD + KP    E+ AR+    R    
Sbjct: 62  EVCKIIRKTSNIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSN 121

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N        +++           +   L + E  +  YL+ N+   V++ +I + ++G
Sbjct: 122 FTNTDYIHYDILKLDLKTNSLYKNEKEISLTKTEYNLFHYLLLNKELVVSREKILNEVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+ +      + + R  GY +
Sbjct: 182 -YDYMGEEKIVDVYINALRKKI-DYDENKFIHTVRGFGYVL 220


>gi|226356970|ref|YP_002786710.1| response regulator OmpR [Deinococcus deserti VCD115]
 gi|226318960|gb|ACO46956.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 228

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +      GD G ++E  +S             D+  ++  L        
Sbjct: 13  ILVIEDDLDIANVLKMDLGDAGYTVEHADSAMNGLIKAREEHPDLILLDLGLPDF--DGG 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R +S VP+I ++   ++   +     G DD + KP H  E+LARV    R  + 
Sbjct: 71  DVVQRLRKNSAVPIIVLTARDTVDEKVRLLGLGADDYLIKPFHPDELLARVKVQLR--QR 128

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +    R    + E   L  +E  IL  L+   G+  ++ +I   I+   
Sbjct: 129 ITESLSMGDLTLDPQKRLVTYKAEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGR 188

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 NVV+ H++ LR KLR+  G+  + + R +GY++
Sbjct: 189 LPEG-SNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYAL 226


>gi|222875029|gb|EEF12160.1| predicted protein [Populus trichocarpa]
          Length = 175

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 8/172 (4%)

Query: 54  IGKGEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
           +  G   L L R  RA S+   VP++ ++        +   D+G DD + KP   +E+LA
Sbjct: 1   MLPGASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLA 60

Query: 111 RVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R+ A+ RR       ++   G + + +       QG++  +   E ++L YLM +  +  
Sbjct: 61  RIRAVLRRRAPEQIQDKVNIGELVLDAAAHRVSWQGDMIKVGPTEFKLLHYLMKHPERVH 120

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ Q+   ++G     +EE  V+ H+ +LR+ L        +++ R  GY +
Sbjct: 121 SRAQLLDKVWGDH-VFIEERTVDVHVKRLREALGMAGA--LIETVRGAGYRL 169


>gi|319652578|ref|ZP_08006692.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317395652|gb|EFV76376.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +   +    + + EE L    +E+   I   L+      +
Sbjct: 5   ILLVEDDREINKLIKDHLEQENFKV--LTAFDGEEALSLFKKEEFDLILLDLMLPKFSGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S +P++ IS   S          G DD ++KPI   E+ ARV A  RR   
Sbjct: 63  DILKKVREKSLLPVLIISAKGSDLDKALGLGFGADDYISKPISMIELTARVHAAIRRATQ 122

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +    +   + +       +V+ ++  L  +E  IL+  M N+ +   K QI
Sbjct: 123 YIPATNHSAPAIIQFKELSLDLSTFSVQVKDKIAQLTSKEFHILKLFMTNQSRVFTKEQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  I+   D    ENV+  HI +LR+K+  +      + +   +GY +
Sbjct: 183 YQFIW-QDDYYGNENVINVHIRRLREKIEKDPSNPQYIRTIWGIGYKL 229


>gi|229175730|ref|ZP_04303236.1| Two-component response regulator vanRB [Bacillus cereus MM3]
 gi|228607681|gb|EEK64997.1| Two-component response regulator vanRB [Bacillus cereus MM3]
          Length = 216

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPD--IDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LK 120
           +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR      
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + + S      V G    L  +E  IL  L+ NRGK ++++ + + ++G 
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEILYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 215


>gi|186471004|ref|YP_001862322.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197313|gb|ACC75276.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 220

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 110/221 (49%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D  L+  G      + G++++     +  +    +   D+  ++  L    G ++L
Sbjct: 4   LLVEDDRLIGSGVEDGLIEAGMTVDWACDGKHAQLALETTPYDLVILDLGLPRVSGTELL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +  R  R H   P++ ++   ++   +   ++G DD + KP    E++AR  A+ RR + 
Sbjct: 64  DWIRKRRDH--TPVLVMTARDTVADRVSGLNAGADDYLGKPFDLTELVARCRALVRRSQG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +  E G + V  +        E   L  RE  +L  L+AN+G+ +++ ++  ++YG 
Sbjct: 122 RSTDTIEYGDLLVDPERLTVMRGSERIALSSRECALLVELLANQGRPLSRARLQDSLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++E +E N +E HIS LRKKL    G   + + R +GY ++
Sbjct: 181 WNEEIESNAIEVHISNLRKKL----GAQLIRTIRGVGYVVE 217


>gi|147676383|ref|YP_001210598.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272480|dbj|BAF58229.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 232

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  ++     +    +  S+  D+  ++  L G      
Sbjct: 6   ILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGP-LNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P+I ++     Q  +  FD+G DD V KP    E+L RV AI RR   
Sbjct: 65  EVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILRRSHP 124

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S         + G + +    +   V+G    L   E ++L +L  N GK +    + + 
Sbjct: 125 SEEFPKGPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVITHEDLLTR 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           ++G  +   E + + ++IS LRKK+ +  G    +  K  +GY +
Sbjct: 185 VWGA-EYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYL 228


>gi|218534663|ref|YP_002424425.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis]
 gi|218473132|emb|CAQ76560.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis]
          Length = 226

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   S +  E L  +   D  AI   ++  G    
Sbjct: 3   LLLVEDEEKTSTYLNRALSESGFTVDV--SADGAEGLHYALEFDYDAIILDVMLPGMDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +RA  Q P++ +S   S+   +     G DD + KP    E++AR+ A+ RR   
Sbjct: 61  RVLEGVRAAKQTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRAT 120

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + +   + +    R     G    L  +E  +L  L  ++G+ ++K  I   I+
Sbjct: 121 DGADITQLQIHDLHLDLLARRVFRAGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NVVE  I +LR K+        + + R +GY ++ 
Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKVDAPFDIKLLHTVRGMGYVLEV 223


>gi|325847010|ref|ZP_08169836.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480982|gb|EGC84027.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 230

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D       +DG S+   FN+ +  + L  +   D+  ++  L       
Sbjct: 5   IIIVDDEKEIADLLELCLTNDGFSVSKAFNAKDALD-LVEAENFDLMILDIMLED--MDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + IR     P+I ++        +     G DD + KP +  E++ARV    RR +
Sbjct: 62  FSVCKKIREKHYFPIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRRSQ 121

Query: 121 VSN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N           +   + +        +  +   L   E  I+ YL  N+GK V+  +
Sbjct: 122 KYNKTEKIKDDETYDIRGLLIDKKSHKCFLYDKQIQLTPIEFEIIWYLCKNQGKVVSSEE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           +F  I+         N V +HI ++R K+ +       + +   +GY I+
Sbjct: 182 LFENIWKEK-YLDNNNTVMAHIGRIRDKMNDSGRNPKFIKTVWGVGYEIE 230


>gi|167561696|ref|ZP_02354612.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis EO147]
 gi|167568932|ref|ZP_02361806.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis C6786]
          Length = 250

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 6   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGAEADTALSMQTFDLLILDLGLP--KMPGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 64  DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIACANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 184 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 222


>gi|126699566|ref|YP_001088463.1| two-component response regulator [Clostridium difficile 630]
 gi|255101086|ref|ZP_05330063.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306951|ref|ZP_05351122.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115251003|emb|CAJ68832.1| Two-component response regulator [Clostridium difficile]
          Length = 223

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +G    F +DG ++  F +   +E L     +++  I            
Sbjct: 3   LLIIEDDINLNEGLFYAFENDGFNV--FKAYTKQEGLNIFNSKNIDFIILDCNLPDGDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +IIR  S +P+I ++   S    +   + G+DD + KP     + ARV    R+ K 
Sbjct: 61  DVCQIIREKSDIPIIMLTARDSEIDEVKGLEIGLDDYITKPFSLSVLKARVKVAIRK-KS 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N    +  I++           E   L   E ++L YL+ N+G+ + K QI   I+   
Sbjct: 120 NNKVIYSNGIKLDQKLLKVYKNKECLELSSVEYKLLSYLIENKGQILLKEQILHHIWDSE 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  V++N+V  +I +LR K+ +       + +   +GY   WN
Sbjct: 180 ENYVDDNIVSVNIRRLRVKVEDDPSNPKYIKTAYGMGYL--WN 220


>gi|291534760|emb|CBL07872.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 220

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++  +   G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSN-PLKINMEELHRYDLILLDIMMP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    ++ + +HI  +R K  +   + P+ +   +GY  +
Sbjct: 180 FDSESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWE 219


>gi|255009234|ref|ZP_05281360.1| putative two component system response regulator [Bacteroides
           fragilis 3_1_12]
 gi|313146983|ref|ZP_07809176.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
 gi|313135750|gb|EFR53110.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
          Length = 224

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G ++   N       L      D+  I+  +   G   L
Sbjct: 4   ILLVEDEVNIASFIERGLKEFGHTVSVANDGNSGWELIRQEVFDLLIIDIIMP--GMNGL 61

Query: 62  ELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL R+ R      VP+I ++   + +  +   D+G DD + KP   +E+ AR+ AI RR 
Sbjct: 62  ELCRLYRRQYGYLVPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKAILRRG 121

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  S  +     + +  + R          L  +E R+LEY M ++G  +++  +   ++
Sbjct: 122 REDSARQLVCDDLVLNCNSRRARRGEAEIDLTVKEYRLLEYFMTHQGLVLSRLTLLRDVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +     NVV+ +++ LR K+        + +    GY +
Sbjct: 182 DK-NFDTNTNVVDVYVNYLRGKIDKDFSKKLIHTVVGSGYIM 222


>gi|254519605|ref|ZP_05131661.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913354|gb|EEH98555.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +    +  ++  S++     E       +   DV  ++  L       L
Sbjct: 3   LLLVEDERELSEALFQILTNNKYSVDAVYDGEDGLDYALTGVYDVIVLDTMLP--KLNGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R      P+I ++    ++  +   D G DD + KP    E+LAR+ +I RR  
Sbjct: 61  SLLKQLRKSGISTPVIMLTAKSQIEDRVRGLDLGADDYLTKPFATEELLARLRSITRRKG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V++N    G I +  D  D +V  E   L  +E  I++Y M      V+K  + + ++
Sbjct: 121 NVVNDNILTYGDISLNLDTYDLDVNNENIRLTLKEFEIIKYFMERPKCVVSKDDLITKLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G FD  VE N +E +IS +RKKL        + + R +GY ++
Sbjct: 181 G-FDSEVEYNNIEVYISFIRKKLTYLKSNVSIVTIRGVGYRME 222


>gi|313887875|ref|ZP_07821554.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846041|gb|EFR33423.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 227

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++         +G ++  F +   EE ++ + RE    +   ++  G    E
Sbjct: 6   LLVEDEESIRKFVKINLEREGYTI--FEAGSGEEGIEIARRELPDIVVLDIMLPGIDGFE 63

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R     + +I ++        +     G DD + KP +  E+  R+ +I RRL++
Sbjct: 64  VCKTLRGEFPSLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSIERRLEI 123

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +N     P ++ S  R          L   E +I++  M N GK + + +I   +
Sbjct: 124 GEENESNLITDPPFKIDSYSRKFYKDDVELELTPTEYQIIKIFMTNPGKAMTRNEILKLV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  D   +  +V+ +I +LR K+  N    D +++    GY 
Sbjct: 184 WG-DDFLGDSKIVDVNIRRLRSKIETNPAKPDYIETVWGTGYR 225


>gi|325681430|ref|ZP_08160956.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324106920|gb|EGC01210.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 226

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
             +I+D   + +    L  D G  +++ F+  E    L  +   D+  ++  L  K    
Sbjct: 5   IAVIEDDREINNILFRLLTDSGYEAVQAFDGSEASR-LLKAENFDLVLMDLMLPYK--SG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L   IR  SQ P+I IS    ++T L+    G DD + KP    E+L R+  + RR  
Sbjct: 62  ERLIAEIRETSQTPVIVISAKSMMETKLEVLRLGADDYIIKPFDIDEVLVRIEVVLRRTA 121

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S   +  E G I + +      + G    L  +E  +L   M +  K   K +++ +++
Sbjct: 122 GSQHSDSLEVGGIVLNNTENSVTLDGTAVRLTAKELMLLRLFMEHPQKVYTKAELYESVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  E+N +  H+S LR KL+   G D +D+   +GY +
Sbjct: 182 NDT-YYYEDNTINVHVSNLRSKLKKAGGRDFIDTVWGIGYRL 222


>gi|229109465|ref|ZP_04239057.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228673962|gb|EEL29214.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
          Length = 232

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 7   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEGLQILSEQTVDIALLDVMLP--GIDGL 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  + ++ +I ++     +  +     G DD + KP     + AR+ ++ RR++
Sbjct: 65  EVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 124

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|255657296|ref|ZP_05402705.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|296451852|ref|ZP_06893571.1| response regulator [Clostridium difficile NAP08]
 gi|296879752|ref|ZP_06903726.1| response regulator [Clostridium difficile NAP07]
 gi|296259331|gb|EFH06207.1| response regulator [Clostridium difficile NAP08]
 gi|296429223|gb|EFH15096.1| response regulator [Clostridium difficile NAP07]
          Length = 276

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L+DD   + D    +  +DG    ++ +N L+    L   A  DV  ++  L      
Sbjct: 48  ILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAIS-LCKIACPDVVILDIMLPD--ID 104

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ + IR  S   ++ +S        +    SG DD + KP   REI+ RV A  RR 
Sbjct: 105 GIEVCKKIREFSYCSILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIVFRVKAQLRRQ 164

Query: 120 KVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +        ++  + G I +  +G       +   L  RE  +L Y+  N  K + K ++
Sbjct: 165 QYQSIVPSDSSVIKIGDITIDIEGNRVYKDRKEIELTGREYHLLSYMAQNVNKIIGKERL 224

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +  ++G++  ++ +N +  HI  +R+K+ +      +  + + LGY +
Sbjct: 225 YEQVWGVY-SSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKL 271


>gi|255280864|ref|ZP_05345419.1| subtilin biosynthesis regulatory protein SpaR [Bryantella
           formatexigens DSM 14469]
 gi|255268801|gb|EET62006.1| subtilin biosynthesis regulatory protein SpaR [Bryantella
           formatexigens DSM 14469]
          Length = 240

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +     F   G  +    + +  E L+ +  + D+  ++  +       
Sbjct: 21  ILIVDDEPDIVEMLRCFFERRGYFV--LTATDGAEALKKAEQQPDMILLDVNMPE--LDG 76

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR     P++ ++        +  F +G DD + KP    E+ ARVAA  RR  
Sbjct: 77  MEVCRRIRDFVPCPILFLTARIEESDRVQGFAAGGDDYILKPFSLAELEARVAAHLRRET 136

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              N A       + +    R   V  E    P++E  I+E L AN G+   K +I+  +
Sbjct: 137 RRINGASVRFDKELSIDYSQRKVFVNKETLAFPKKEFAIIELLSANAGQVFDKERIYEKV 196

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G +D   + +VV  HI ++R +L      + +++    GY 
Sbjct: 197 WG-YDGEGDSSVVAEHIRRIRARLSAVTDREYIETVWGCGYK 237


>gi|150389689|ref|YP_001319738.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949551|gb|ABR48079.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++  +    ++G  +    + + E+ L+      V  +   ++       
Sbjct: 4   ILVVEDEDILREVIMDYLIEEGYQV--LEAADGEQALELFQSHSVDLVILDIVLPKIDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR +S +P+I ++       +L  ++ G DD + KP   R ++ +V     +   
Sbjct: 62  SVCRRIRKNSNIPIIMLTARSDEDDSLLGYELGADDYLIKPYSPRVLMVKVKRFLEKYSG 121

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +        I +    R   V G    L   E  +L YLM NRG  + + Q+ + I+G
Sbjct: 122 NMDEMLTSASGIVINMGARLVSVDGNTISLTHTEFEMLAYLMQNRGIVINREQLIAKIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +E  V SHI  LR KL +K     + +    GY  +
Sbjct: 182 -YDFYGDEKTVNSHIRNLRAKLGSKGS--CIVTVIRSGYKFE 220


>gi|309775020|ref|ZP_07670035.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917238|gb|EFP62963.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 226

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E   +++  + ++   +     I   ++       
Sbjct: 4   LLVVDDEERIRSMIRKYGEFEGHEIE--EAVDGMDAIEKCKQAAYDLIIMDIMMPNLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + IR  +  P+I +S        +  F+ G+DD V KP   +E++ RV+AI +R   
Sbjct: 62  SAVKEIRKDASTPVIMLSARGEEYDRIHGFEIGIDDYVVKPFSPKELMMRVSAILKRYHG 121

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             N           +++    R   +  +   +  +E  +L YL+ N G  + + Q+   
Sbjct: 122 DQNTKKKDIYTYEGLKIDFTARKVFIDDKEQEMSPKEYVLLFYLVRNEGIALTREQLIHD 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  +++HI  LRK L++      + + R +GY  +
Sbjct: 182 VWG-YDFYGDDRTLDTHIKLLRKSLQDY--SRLIVTLRGVGYRFE 223


>gi|310826825|ref|YP_003959182.1| DNA-binding response regulator [Eubacterium limosum KIST612]
 gi|308738559|gb|ADO36219.1| DNA-binding response regulator [Eubacterium limosum KIST612]
          Length = 231

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG       +G ++    +++  E L    ++    +   L        
Sbjct: 6   ILLVEDDTSLIDGLEYTLVKNGFNVRVAQTVQ--EALLLFEKDSFDLLLLDLTLPDGTGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           ++ R +R HS+VP+I ++        +   D G DD + KP +  E+++R+ A+ RR  K
Sbjct: 64  DICRSVRRHSEVPIIFLTASDEEVNVVMGLDIGGDDYITKPFNLGELVSRIKALLRRARK 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +   E+  I V          G+   L   E+R+L   + N G  +++  I   ++  
Sbjct: 124 LRSPILESHGIAVDLMKGSATKNGQSLELTAAEQRLLIMFLQNPGMILSRNSILERLWDS 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
             + V++N +  +I +LR K+ +       + + R +GY 
Sbjct: 184 PSDFVDDNTLSVYIRRLRSKIEDDPNHPARLLTVRGMGYK 223


>gi|317056870|ref|YP_004105337.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449139|gb|ADU22703.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 234

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 97/227 (42%), Gaps = 13/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE--WLQSSAREDVSAIEAFLIGKGEKV 60
           ++ +D   +++  +      G  +   N  E     + ++    DV+ ++  +   G   
Sbjct: 5   LVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGGFDVALLDIMMP--GIDG 62

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + IR  +  V +I +S        +    SG DD + KP    E++ARV A+ RR+
Sbjct: 63  MQVCKKIREKNNSVGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVCRRV 122

Query: 120 KVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             S       +   +GP  +    R      +   L + E +I+EY   N+   + ++ I
Sbjct: 123 NRSAVKPEEASTITSGPFVLNLKSRTVTKNNKQIDLTQVEYQIMEYFFKNQNAALDRSSI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            + I+G      ++ +V+ +I ++R K+ ++      + +    GY 
Sbjct: 183 LNHIWGES-YYGDDKIVDVNIRRIRMKIEDEPSNPKYILTIWGFGYK 228


>gi|295103423|emb|CBL00967.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 224

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD + +     + F   G  +   FN  E  +  Q   + D+  ++  +   G   
Sbjct: 5   ILIADDESDIVSMLGSFFESKGFRVLPAFNGAEALK--QVEKQPDIILLDINMP--GTDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+ + IR H   P++ ++        +  F  G DD + KP    E+ ARV A  RR  
Sbjct: 61  LEVCKRIRDHISCPILFLTARIEDTDKVKGFTVGGDDYIVKPFSLMELEARVRAHLRREA 120

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N  A+    G + +    R      +   L ++E  I+E L  N G+   K +I+  I
Sbjct: 121 RHNFEAQVNFSGDLTIDYSERCLFFGDKRVGLAKKEFDIVELLSQNPGQVFDKERIYEHI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G +D   + +VV  HI ++R K+        V++    GY 
Sbjct: 181 WG-YDSEGDSSVVAEHIRRIRTKIAAYTDHIYVETVWGCGYK 221


>gi|227486950|ref|ZP_03917266.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227093024|gb|EEI28336.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 304

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G   +     +  E + +  RE    I   L+  G   +
Sbjct: 83  ILVVDDDPAISEMLSIVLEAEGF--DTVVVTDGAEAVATFEREQPDLILLDLMLPGMNGI 140

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S VP++ ++        +   +SG DD V KP   +E++ARV A  RR   
Sbjct: 141 DICKTIRRSSPVPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKELVARVRARLRRSSS 200

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N   +   + +           E   L   E  +L  L    G+   + ++   ++G 
Sbjct: 201 DDNEIMQISNLTIDVPSHTVRRGNEELQLTPLEFDLLVELGRKPGQVFTREELLEKVWG- 259

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYSI 220
           +  A +  +V  H+ +LR K+        +  + R +GY +
Sbjct: 260 YKHASDTRLVNVHVQRLRSKIETDPENPTIVLTVRGVGYKV 300


>gi|254384902|ref|ZP_05000238.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343783|gb|EDX24749.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 225

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  V  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +RA     P++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +     T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EAAQSPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|328477647|gb|EGF47686.1| two-component response regulator [Lactobacillus rhamnosus MTCC
           5462]
          Length = 194

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 13/192 (6%)

Query: 22  DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81
           +G  +      E       S   D+  ++  L       LE+ R IR     P+I ++  
Sbjct: 1   EGYDVVTAYDGEEALKKVESESPDLILLDLMLP--KIDGLEVARQIRKEHDTPIIMLTAK 58

Query: 82  PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN----------RAETGPI 131
            S    +   + G DD V KP  +RE++ARV A  RR   +N             E G +
Sbjct: 59  DSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSSANAAGSEEDEANRELEVGDL 118

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +  D      +GE   L  RE  +L YL  + G+ + +  +   ++G +D   +   V+
Sbjct: 119 TIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTREHLLQTVWG-YDYFGDVRTVD 177

Query: 192 SHISKLRKKLRN 203
             + +LR+K+ +
Sbjct: 178 VTVRRLREKIED 189


>gi|92116995|ref|YP_576724.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799889|gb|ABE62264.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 230

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D  +  F + G   E  +  E    L      DV  I+  L  +    L
Sbjct: 3   LLIIEDDRESADYLVKAFREVGHVAELASDGEEGLSLADGGDYDVLVIDRMLPKR--DGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R   ++ P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRRG 120

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +           E   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 GPAEETVYRVGDLELDRLSHRVVRGEEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMI 221


>gi|107025799|ref|YP_623310.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116693018|ref|YP_838551.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737720|ref|YP_001778980.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895173|gb|ABF78337.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116651018|gb|ABK11658.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169819908|gb|ACA94490.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 220

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L++D  L+  G       +G +++     +     L+++    +          G  VL
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRATGYGLLLLDLGLPNRDGLSVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
              R  R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR   
Sbjct: 64  AALR--RRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVNRRHAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      GP+R+        +  +  PL  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 122 RAQTTLAIGPLRLDPVKHLVWLDDDEVPLSPKEFVLLHELMREPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDMIRTVRGVGYRI 216


>gi|315618142|gb|EFU98733.1| transcriptional regulatory protein baeR [Escherichia coli 3431]
          Length = 240

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I        +    +  +           D+  ++  L   G   L
Sbjct: 13  ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP--GTDGL 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S +P++ ++        L   + G DD + KP   RE++ARV  I RR K 
Sbjct: 71  TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +     P+ +         +G++  L   E R+L+ L    GK  ++  + + +Y
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
             +   V +  ++SHI  LR+KL +       + +   +GY  + +
Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYSVGYRWEAD 235


>gi|311894023|dbj|BAJ26431.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +++  +         +    DV  ++  L   G     
Sbjct: 4   LVVEDEQRLALAIKHGLEAEGFTVDTVHDGLSGLARATDHSYDVVILDIMLP--GLNGYR 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +   +RA  S   ++ ++         +  D+G DD ++KP     ++AR+ A+ RR+  
Sbjct: 62  VCARLRAAGSDAGILMLTAKDGEWDEAEALDTGADDYLSKPFSFVVLVARLKALARRIGS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  RA  G + V S  R     G    L  RE  +L++L    G+ V+K +I   ++  
Sbjct: 122 RAPRRAVLGDLVVDSAARTCSRAGRPIALTPREFAVLDHLARRAGEAVSKREILEQVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++ + N VE HIS LR+K+    G   + + R  GY ++
Sbjct: 182 AADS-DPNTVEVHISALRRKIDTPFGRSALQTVRGAGYRLE 221


>gi|258623484|ref|ZP_05718487.1| transcriptional regulator [Vibrio mimicus VM573]
 gi|258625936|ref|ZP_05720806.1| transcriptional regulator [Vibrio mimicus VM603]
 gi|262165025|ref|ZP_06032763.1| transcriptional regulator [Vibrio mimicus VM223]
 gi|262173746|ref|ZP_06041423.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|258581775|gb|EEW06654.1| transcriptional regulator [Vibrio mimicus VM603]
 gi|258584299|gb|EEW09045.1| transcriptional regulator [Vibrio mimicus VM573]
 gi|261891104|gb|EEY37091.1| transcriptional regulator [Vibrio mimicus MB-451]
 gi|262027405|gb|EEY46072.1| transcriptional regulator [Vibrio mimicus VM223]
          Length = 218

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 101/221 (45%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   +  ++    +  Q   + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--DCLHAETIADVKQHWDKADLVILDRQLPD-GDSVQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            L    +    +P+I ++   +++  +   D+G +D + KP    E+ AR+ A  R    
Sbjct: 62  HLLDW-KKIKDIPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRSPDN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +++  T  + +    R+    GE   L R E  +L +L +N G+   + ++   ++G
Sbjct: 121 GQDDSKVVTANLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDELLDHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 -YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 216


>gi|188585544|ref|YP_001917089.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350231|gb|ACB84501.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 234

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +     A    +G  +   +       L      D+  ++  L        E
Sbjct: 11  LIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPN--MSGEE 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R IR   + P++ ++   S    +     G DD V KP   REI+AR+  I RR+   
Sbjct: 69  IARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKE 128

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++       G I + +  +   ++G    L + E  IL  L     K  ++  +   I
Sbjct: 129 PGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLADRI 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           YG +    +   +++HI  LR+K+         + +    GY  
Sbjct: 189 YG-YLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231


>gi|107028754|ref|YP_625849.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116690087|ref|YP_835710.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170733421|ref|YP_001765368.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105897918|gb|ABF80876.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116648176|gb|ABK08817.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169816663|gb|ACA91246.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 224

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D A+  +  +      G  ++  ++         SA  D   ++  L   G   L + 
Sbjct: 6   VEDDAVTANEIVGELTARGFEVDWTDNGREGMMRAMSASYDAITLDRMLP--GADGLAIV 63

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
             +R      P++ +S    +   +    +G DD + KP    E+ AR+  + RR + S 
Sbjct: 64  TAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQASG 123

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G + +    R      +  PL   E R+LE++M N G+ + +T +F A++G
Sbjct: 124 VPQQTLLKVGALELDLISRCARRGADEIPLLPTEFRVLEFMMRNAGQTITRTMLFEAVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ H+ +LRKK+        + + R  GY +
Sbjct: 184 -YHFDPGTNLIDVHMGRLRKKIDPPGANPMIQTVRGSGYML 223


>gi|71064707|ref|YP_263434.1| osmolarity response regulator [Psychrobacter arcticus 273-4]
 gi|93004966|ref|YP_579403.1| osmolarity response regulator [Psychrobacter cryohalolentis K5]
 gi|71037692|gb|AAZ18000.1| transcriptional regulatory protein, OmpR [Psychrobacter arcticus
           273-4]
 gi|92392644|gb|ABE73919.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 254

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        DDG  +   +     + L       +  ++  L   GE  +
Sbjct: 14  ILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLLQRELFSLVVLDLMLP--GEDGI 71

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R  +  +P+I ++        +   ++G DD + KP + +E+LAR+ A+ RR  
Sbjct: 72  SICKRLREDNGDIPIIMLTAKGGDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQN 131

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E GP  +    R  +  G V  L   E  +L+ L+ +  + + + +
Sbjct: 132 RELPGAPSHQLEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDK 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  +    E  ++  +S+LR+ + +       + +   +GY  
Sbjct: 192 LMNLARGR-EWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 239


>gi|297588589|ref|ZP_06947232.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573962|gb|EFH92683.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 229

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          D  ++    +    + L+   +  +      ++ +G   L
Sbjct: 4   IMVVDDEKDIVKAIEIYLKTDNYNV--LKAYNGYDALELMEKNKIDLFLVDIMMEGMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S  P+I +S    L   +   + G DD + KP    E+LAR+ +  RRL++
Sbjct: 62  ELTQKIREVSNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLRRLEL 121

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S       N    G + +  D ++  + GE   L   E  I+  L+ N+G      +I+ 
Sbjct: 122 SKDNSLNGNVFSAGRLTINDDKKEVLIDGEEIKLTPYEYGIILLLLKNKGIVFTSEEIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++      V + +V  HIS+LR+K+  N    D + S   +GY I+
Sbjct: 182 NVWEAPPYDV-KKIVSVHISRLREKVEINPRRPDLIKSVYGMGYKIE 227


>gi|299821998|ref|ZP_07053885.1| response regulator [Listeria grayi DSM 20601]
 gi|299816626|gb|EFI83863.1| response regulator [Listeria grayi DSM 20601]
          Length = 230

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + D       ++G  + + +N  E  E +Q      +  ++  +       
Sbjct: 4   ILIADDDKEIVDLVKLYLQNEGYQIYQAYNGKEAWEIVQDKM-PSLVILDVMMPE--MDG 60

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ + +R  +   P++ +S        +    +G DD + KP +  E+  RV  I RR+
Sbjct: 61  LEVCKKMRNENILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKVILRRI 120

Query: 120 K--VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   +N+  +T     GPI +  D     V  +   L   E  IL  L +  G+  +   
Sbjct: 121 QNIQANSSVDTAKTIIGPIVIDKDQHIVTVNEKELHLTTSEFDILYLLASEPGRVFSSEY 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           IF  I+           V  HIS LR KLR    G + + +   +GY I+
Sbjct: 181 IFEKIWQEK-ALGASKTVMVHISNLRDKLRVAMAGENVIKTIWGVGYKIE 229


>gi|222082916|ref|YP_002542281.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727595|gb|ACM30684.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 240

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    + L   +G       S    + L +  + D+  ++  L   GE   
Sbjct: 9   ILIVEDDTDIAHMLVELVKSNGFEATSAASGGEMDRLLARHKFDLIVLDGMLP--GEDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R+   +P++ ++        +   + G DD V KP + RE++AR+ +I RR   
Sbjct: 67  SICRRLRSSRSIPILMLTALREDVDRILGLELGADDYVTKPFNSRELMARIKSILRRASF 126

Query: 122 SNNRAE------TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           S    E          R+    R     +G    +   E  +L    +N  K + + Q+ 
Sbjct: 127 SQQPEEDVAPMTFAGWRIDPKSRQLFDAEGAEVSMTTAEFDLLWAFCSNPNKVLTREQLL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218
           S  +      VE   +++HIS++R+K+   L  DP  + + R  GY
Sbjct: 187 SMTHAGSAGPVE-RSIDAHISRVRQKIEPNL-KDPTFIKTVRLGGY 230


>gi|164688358|ref|ZP_02212386.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM
           16795]
 gi|164602771|gb|EDQ96236.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM
           16795]
          Length = 222

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +         +G  ++  N  +  E +Q     + + I   ++       
Sbjct: 5   ILVVEDDYKSQQLLQQFLTSNGYKVDCAN--DGLEGIQMYKDRNYNLILLDIVMPNLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + ++IR  S VP+I ++   S    +  FD   DD + KP  +  ++ R+ A+ RR K 
Sbjct: 63  SMCKMIRKESDVPIIFVTALSSESDQIKGFDLLCDDYIVKPFSYNLLIKRIEAVLRRSKE 122

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        I++       E+ G++  L  +E  IL+ L+ N  + V + ++  +I+G
Sbjct: 123 DKAGVYLTFEKIKLNLKTYSAEIDGKIIDLTLKEFNILKSLIENYPQVVTREKLLDSIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   +  +V++HI  +RKK+        + + + +GY++
Sbjct: 183 -YDYFGDTRIVDAHIKNIRKKI----ILPYIKTVKGIGYTL 218


>gi|332655153|ref|ZP_08420894.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516013|gb|EGJ45622.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 222

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G+  +     + +E L+    +D  A+   ++       
Sbjct: 4   ILVVEDERAMREIIRDYLTAHGLECDLAR--DGQEALELLEEQDYDAVVLDVLMPRLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S VP++ ++     + TL  +  G DD V KP     +LA++ A+ RR + 
Sbjct: 62  GVCRAVRRQSSVPILFLTALGGEEETLRGYALGADDYVTKPFSLAVLLAKLQALIRRSRG 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G I+V +  R     G+   L  RE  +L  L+ N+G+ +++ Q+   ++G
Sbjct: 122 ERKTGVLSCGAIQVDTGARRCTAAGQEIKLSPREYELLLCLLRNQGQVLSRAQLLDKVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L D   ++  V+  +  LR  L        + +    GY ++
Sbjct: 182 L-DFEGDDRAVDVRVRSLRAALGKAG--KQIKTVFKAGYRLE 220


>gi|239904794|ref|YP_002951532.1| transcriptional regulatory protein CpxR [Desulfovibrio magneticus
           RS-1]
 gi|239794657|dbj|BAH73646.1| transcriptional regulatory protein CpxR [Desulfovibrio magneticus
           RS-1]
          Length = 231

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + +        +G   E  ++         S + D+  ++  +        
Sbjct: 4   LLLIDDDMELCELLGDYLHGEGFDTESVHNPMVGVTRAVSGQHDLVVLDVMMPE--LNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IRA SQ+P++ ++        +   + G DD + KP + RE++AR+ AI RR + 
Sbjct: 62  EVLRRIRAASQIPVLMLTARGEDVDRIVGLEIGADDYLPKPFNSRELVARIRAILRRTET 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +        + +   GR     G+   L   E  ILE LM   GK V++ ++ 
Sbjct: 122 GEPTPSKAGESISISDVVINVGGRSVLCNGKPLDLTSIEYSILEVLMRMAGKVVSREELA 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
               G    A E   ++ HI  LRKKL  + L  + + + R +GY
Sbjct: 182 EKAMGRKHSAYE-RSLDVHICSLRKKLGTHSLYGERIKTVRNMGY 225


>gi|226308071|ref|YP_002768031.1| two-component response regulator PrrA [Rhodococcus erythropolis
           PR4]
 gi|229488493|ref|ZP_04382359.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
 gi|226187188|dbj|BAH35292.1| two-component response regulator PrrA [Rhodococcus erythropolis
           PR4]
 gi|229323997|gb|EEN89752.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
          Length = 234

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEA-FLIGKGE 58
            +++DD A V           G ++    +++  + L+  S  R D   ++    +  G 
Sbjct: 7   ILVVDDDADVLTSLERGLRLSGFTV--LTAVDGADALRVISDKRPDAVVLDINMPVLDGT 64

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            V+   R   A +++P+  +S   S+   +   +SG DD + KP    E++AR+ A+ RR
Sbjct: 65  GVVTALRA--AGNEIPICVLSARNSVDDRIAGLESGADDYMVKPFVLAELVARIRAMLRR 122

Query: 119 LKV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       N    G + +   GR   V G+  PL +RE  +LE L  N G  + + 
Sbjct: 123 SNTPAGDHSEGTNTLRVGNLDIDLSGRRVRVDGKEVPLTKREFELLEVLAHNSGIVLTRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   ++G +D   + NVV+  I  LR+K  +      + + R +G+ +  N
Sbjct: 183 RLLELVWG-YDFVADTNVVDVFIGYLRRKFESGGSPRLLHTVRGVGFVLREN 233


>gi|71083864|ref|YP_266584.1| phosphate regulatory protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062977|gb|AAZ21980.1| phosphate regulatory protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 226

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 99/225 (44%), Gaps = 12/225 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEKVL 61
           +++D   +          +G  +   +S    E ++   +   D+  ++  L       +
Sbjct: 7   IVEDEQPIITLVKYNLEKEGYKVS--SSDNGNEGIEDIKKLFPDLVLLDWMLPDF--SGV 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ +I++   +    P+I ++     +  +   +SG DD + KP    E+LAR+ A+ RR
Sbjct: 63  EICKILKKEKKFKEIPIIMLTAKGEDEDKIKGLNSGADDYITKPFSFPELLARIKALLRR 122

Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            K S  ++  E   ++V    R    + +   L  +E  ++ + + N  +  ++ QI   
Sbjct: 123 SKPSLVSDIVEFEDLKVDRLTRRVFRKNKEIHLGPKEYDLINFFIKNPKRVYSRDQILEN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  VE   V+ HI +LR+ +      + + + R  GYS++
Sbjct: 183 VW-SDNINVETRTVDVHIRRLRQSINIDGFKELIRTVRSAGYSLN 226


>gi|163846512|ref|YP_001634556.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524297|ref|YP_002568768.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163667801|gb|ABY34167.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448176|gb|ACM52442.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 227

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 103/223 (46%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +++        +G  +    S      +    R D+  ++  L       L
Sbjct: 7   ILVVEDDSGLQELIRVRLEQEGYHVIQTISGLEAIKIIRQQRPDLVILDIMLPD--LDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  + +P++ ++     +  +   + G DD V KP ++ E+LAR+ A+ RR+  
Sbjct: 65  TVCQKVREFASLPILMLTARTMPEDIITGLNQGADDYVIKPFNYDELLARIRALLRRVPA 124

Query: 122 SNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +N     G   I +    R+  V+GE+  L   E ++L  L  + G+ V   Q+  A++G
Sbjct: 125 TNRPLTVGNNLISIDQRKREVRVRGELVDLTPTEYQLLLVLAEHAGEVVTHEQLLRAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             +   + + ++ +I  LR+K+  +      + ++  +GY ++
Sbjct: 185 -SEPMRDNDYLKVYIWHLRRKIEIDPRQPQLLLTEWGVGYRME 226


>gi|332342732|gb|AEE56066.1| transcriptional regulatory protein PhoP [Escherichia coli UMNK88]
          Length = 223

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R++   +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEMMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221


>gi|315150222|gb|EFT94238.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
          Length = 230

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 17/230 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++I+D   + D        + +++    +G N LE       +   D+  ++  L     
Sbjct: 6   LIIEDDPSIADLQKDYLEINDMTVTIEHDGKNGLEAAL----NEPFDLIILDVMLPT--M 59

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R IR   Q P++ +S        +     G DD + KP    E++AR  A   R
Sbjct: 60  DGFEICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNR 119

Query: 119 LK------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +            +   I V +      V         +E ++L +LM +  +   K +
Sbjct: 120 YQLLSKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEE 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           +F +++G      E + V  HI ++R+KL+   L   P+++    GY  +
Sbjct: 180 LFESVWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFN 229


>gi|260777617|ref|ZP_05886510.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605630|gb|EEX31915.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450]
          Length = 219

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 105/222 (47%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E F++    +  Q   + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECFHAEMIADVEQYWEKADLVILDRQLPD-GDSV- 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E     +A   VP+I ++   +++  +   D+G +D + KP    E+ AR+ A  R  + 
Sbjct: 61  EHLVGWKAIKDVPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRAPES 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +++ +T  + +    R+   + E   L R E  +L +L +N G+   + ++   ++
Sbjct: 121 DAQDDSKVKTQHLVIDKATREVFYKDESITLTRTEFDLLLFLASNLGRVFTRDELLDHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 G-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 217


>gi|226324678|ref|ZP_03800196.1| hypothetical protein COPCOM_02463 [Coprococcus comes ATCC 27758]
 gi|225207126|gb|EEG89480.1| hypothetical protein COPCOM_02463 [Coprococcus comes ATCC 27758]
          Length = 237

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 105/222 (47%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  LV+ G + +    G +     S              +  ++  L       +
Sbjct: 5   ILVIEDDDLVRQGIVDILELKGWNAVAAKSCSEALVRIRGEEYMLYVLDMKLPD--GNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR ++  P++ +S Y S +  ++ F++G +D V KP    E +AR+ A+ RR  +
Sbjct: 63  MLCREIRRYTDNPILFLSAYDSEEFIVEGFEAGANDYVIKPFRTFEFIARIKALLRRTGM 122

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            N +      ++G   +    +  +  G    L R E +IL  L+AN    VA+  +   
Sbjct: 123 QNGKKVKKGIKSGEYELDLQKQILQKDGVRIDLTRTEYQILCSLLANAPNLVAREFLLDT 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           I+   +  +++N +  H+++LRKKL  +   DP+++KR +GY
Sbjct: 183 IWDFNENYIDDNTLSVHMNRLRKKLTAENEQDPIETKRGVGY 224


>gi|116490563|ref|YP_810107.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|116091288|gb|ABJ56442.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
          Length = 228

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 7/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE--WLQSSAREDVSAIEAFLIGKGE 58
           + ++I+D   +          +   +   +  E     + Q+S R +V  ++  L  +  
Sbjct: 5   IILIIEDETAIVAYLQTELKFEDYIVLTASDGEMGLSVFEQNSNRINVVLLDWMLPKR-- 62

Query: 59  KVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LE+ R IR  +SQV +I ++    +   +   DSG DD + KP    E+LAR+    R
Sbjct: 63  DGLEVLRRIRKLNSQVSIILMTAKSDIGDKVAALDSGADDYITKPFEIEELLARLRVTIR 122

Query: 118 RLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  +   + +  D       G+V  L +RE ++L YL+ N  K + +  +   
Sbjct: 123 HQNKPRPKLYQVSNLVLDLDAHRVTRDGQVIDLTQREFQLLTYLIENADKTLTRDDLLDN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G+ D   + N  + +I  LR+K+ +      + + R +GY +
Sbjct: 183 VWGV-DFNGQYNTADVYIRYLRQKIDDHFYPKLIHTVRSVGYVL 225


>gi|329902991|ref|ZP_08273335.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548543|gb|EGF33207.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 228

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D +++ DG        G + +  ++    +   S+   D+  ++  L       L
Sbjct: 3   ILLAEDDSVLADGLTRSLRQSGYATDCVHNGVEADLALSTQDFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR +
Sbjct: 61  EVLRKLRARNSHLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGPLSYDQVGRIAYINEQMLDLSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+   LG   + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIE--LGGVRIATVRGLGYCLE 219


>gi|312877424|ref|ZP_07737388.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795813|gb|EFR12178.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 217

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++         +G  +E  +           +   V  ++  L  K     
Sbjct: 3   ILLIEDEEKLRKIIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +  F+ G DD V KP+  +EI+ARV AI +R K 
Sbjct: 61  SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTKK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+      + +    R+  V+G+   L ++E  +L YL   +   +++ QI ++++G +
Sbjct: 121 PNSN---DILFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG-Y 176

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +   V++HI  LR+KL +    D + + R  GY  + 
Sbjct: 177 EYYGDLRTVDTHIKNLREKLGDL--RDYIKTVRGYGYKFEV 215


>gi|283784940|ref|YP_003364805.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282948394|emb|CBG87982.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 223

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQLQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R +   +P++ ++     Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRGNDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVVARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 HASQIISIPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDALMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPDDVITTVRGQGYLFE 221


>gi|162451220|ref|YP_001613587.1| phosphate regulon transcriptional regulatory protein phoB
           [Sorangium cellulosum 'So ce 56']
 gi|161161802|emb|CAN93107.1| Phosphate regulon transcriptional regulatory protein phoB
           [Sorangium cellulosum 'So ce 56']
          Length = 231

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++      F   G  +    S E         R D+  ++  L        E
Sbjct: 6   LIVEDERDLQRVLTYNFRQAGFDVVSAGSGETALRAVKEERFDLVLLDLMLPD--MSGTE 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R ++ +   S VP+I ++        +  F+ G DD V KP   RE++ R  AI +R 
Sbjct: 64  ICRRLKQNPQTSAVPVIMVTAKGEEIDRIVGFELGADDYVVKPFSVRELILRARAILKRS 123

Query: 120 K---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    +  + + G +RV        VQ     L   E R+L  L   RG+ +++  +   
Sbjct: 124 ESPASAPEKFDFGILRVDRAAHRAWVQEAEIALTALEFRLLMMLYDRRGRVLSRDLLLDE 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G     V    V++H+ ++R+KL      D +++ R +GY  
Sbjct: 184 VWGSH-VDVTARNVDTHVKRVREKLGAAG--DYIETVRGVGYRF 224


>gi|126652889|ref|ZP_01725032.1| DNA-binding response regulator [Bacillus sp. B14905]
 gi|126590309|gb|EAZ84430.1| DNA-binding response regulator [Bacillus sp. B14905]
          Length = 233

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +    +   +G+ S+   N++E  +    +   D   ++  L       
Sbjct: 6   ILVLEDERAIAEMIDIILRKEGMTSITVCNTIEAAKSEIYAKTFDFYLLDIMLPD--GSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+  IIR  S  P+  ++   S    L  F +G DD + KP +  E++ARV     R  
Sbjct: 64  LEVAHIIREKSDAPIFYLTAKSSDADKLRGFMNGADDYITKPFNPLELVARVKVQLARYM 123

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 E             D  +  V G    +  R   +L+YL  N G+ ++K QI+ 
Sbjct: 124 KKKQVTENHLFTCSRFTFDIDAAEITVDGVREIISGRLFHLLKYLCDNAGQVLSKEQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            ++G  D   ++N V  HI KLR+K+    G    + + R +GY +
Sbjct: 184 RVWG--DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYKL 227


>gi|330957398|gb|EGH57658.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 225

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENEHAVIILDVMLP--GLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRGGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|302388461|ref|YP_003824283.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302199089|gb|ADL06660.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 231

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + +  + L+     +V  +   ++  G   +
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFHV--IKAYDGYDALKLLEDHEVDLMILDVMMPGLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RTTLKVRETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 121

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +    + G + +  D ++  V+GE+  L   E  IL  L+ N GK  +  +I
Sbjct: 122 LGNMNQQPAGQVYKCGGLAINDDNKEVTVEGELIKLTPIEYNILLLLVRNAGKVFSIDEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 182 YEQIWNE-EAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIE 229


>gi|210617024|ref|ZP_03291359.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787]
 gi|210149547|gb|EEA80556.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787]
          Length = 233

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + + EE +Q+  +E V  +   ++      +
Sbjct: 6   ILVCDDDKEIVEAIEIYLTQEGYEV--LKAYDGEEAIQTLKKEHVDLLIMDVMMPRLDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  + +P+I +S        +   + G DD V KP +  E++AR  +  RR   
Sbjct: 64  RATLKIREENSLPIIILSAKSEDADKILGLNIGADDYVTKPFNPLELVARAKSQLRRYTQ 123

Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +          E G + +  + ++  V GE   L   E  IL  L+ N+GK  +  QI
Sbjct: 124 LGSTVQDEKKEVYEVGGLSINDELKEVTVDGESVRLTPIEYNILLLLVKNQGKVFSIDQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 184 YENIWNE-EAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIE 231


>gi|38505865|ref|NP_942483.1| two-component response regulator [Synechocystis sp. PCC 6803]
 gi|38423889|dbj|BAD02097.1| two-component response regulator [Synechocystis sp. PCC 6803]
          Length = 232

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 103/231 (44%), Gaps = 22/231 (9%)

Query: 2   FVLIDDR---------ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            +L++D          AL ++ Y+  +  DG       +L +    Q      ++  +  
Sbjct: 3   LLLVEDEPDLGMVLEKALRRENYVVDWVQDG-------NLAWSYLDQGWVNYTLAIFDWM 55

Query: 53  LIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           +   G   LEL + +R   S +P++ ++    +   ++  D+G DD + KP    E+LAR
Sbjct: 56  VP--GLSGLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLAR 113

Query: 112 VAAIYRRL-KVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           + ++ RR  ++   + + G  R+            +   L  +E ++LEY M +  + ++
Sbjct: 114 LRSLQRRSPELQPQQLQVGDWRLDYGTFVVVTPDKQQISLTAKEFQLLEYFMKHPQQILS 173

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             QI + ++ L  E+   NVV + +  LR+KL      + +++   LGY  
Sbjct: 174 SEQIKNQLWALSAEST-SNVVAAQVRLLRRKLGEYSHGNLIETVYGLGYRF 223


>gi|196037899|ref|ZP_03105209.1| regulatory protein VanRB [Bacillus cereus NVH0597-99]
 gi|196031169|gb|EDX69766.1| regulatory protein VanRB [Bacillus cereus NVH0597-99]
          Length = 220

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  ++   + +            +  ++  L   G    
Sbjct: 5   ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLP--GMNGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +  +     E   L  +E  IL  L+ N G+ ++   I S ++G +
Sbjct: 123 VAKELHYGKLTILPEDFNVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL +    + + + R +GY ++
Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLE 217


>gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133737759|emb|CAL60804.1| Heavy metal response transcriptional activator protein
           [Herminiimonas arsenicoxydans]
          Length = 231

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 99/225 (44%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D  +    + G ++    +     ++ +    D+  ++  L        
Sbjct: 3   ILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPL--LSGW 60

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           EL   +R+ +    +P+I ++    ++  +   + G DD + KP    E+LAR+  + RR
Sbjct: 61  ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120

Query: 119 LKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             V +      G + +    R     G+   L  +E  +L  L   + + ++++ I S +
Sbjct: 121 SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + + +   + NV+++ + +LR K+ +      + ++R +GY  + 
Sbjct: 181 WDI-NFESDTNVIDAAVRRLRSKIDDPFETKLIHTQRGMGYVCEV 224


>gi|120553067|ref|YP_957418.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120322916|gb|ABM17231.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 221

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 106/223 (47%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ +G +      G S++  +S    + L        + ++  L       L
Sbjct: 3   LLLVEDDRLLAEGLVRQLEKAGFSIDHTSSAREAQILGEQEDYRAAVLDLGLPD--GNGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R+   + P++ ++     Q  ++   +G DD + KP    E++AR+ A+ RR +
Sbjct: 61  EVLKRWRSKLVECPVLVLTARGDWQDKVNGLKAGADDYLAKPFQTEELIARINALIRRSE 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +++ + G   +  + +     +G    L   E R+L  LM+  G   +K Q+   +Y
Sbjct: 121 GRVHSQVKAGGFELDENRQSLRTEEGAEHALTGTEFRLLRCLMSRPGHIFSKEQLMEQLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            L DE+  ENV+E++I +LRK     +G + + ++R  GY  +
Sbjct: 181 NL-DESPSENVIEAYIRRLRK----LVGNETITTRRGQGYMFN 218


>gi|309777924|ref|ZP_07672867.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914322|gb|EFP60119.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 224

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +        +G S++     + +E L+ +A  +   I   ++       
Sbjct: 3   LLLAEDERDLNELVCRKLKKEGYSVDA--CYDGQEALEYAAVTEYDGIILDIMMPKVNGY 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +RA     P++ ++   +++  +   DSG +D + KP    E+ AR+  + R  K
Sbjct: 61  EVLKRLRAEKNMTPVLFLTARDAIEDRVLGLDSGANDYLIKPFSFAELTARIRTMIRLAK 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S     + G + + +         ++  L  RE  +LEY++ N+   +++ +I + I+ 
Sbjct: 121 GSATTHLQAGDLILDTATHTVHRGEKLLLLSAREYALLEYMLLNKNIVLSREKIENHIW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++     N+V+ +IS LRKK+        + + R  GY +
Sbjct: 180 SYEYEGGTNLVDVYISYLRKKVDGGFSCKLIYTVRGSGYVL 220


>gi|261408735|ref|YP_003244976.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285198|gb|ACX67169.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   V +        +G  +   ++          A+  +  ++  L       +
Sbjct: 5   LLLVDDERKVIEFMEPFLRQEGFHIITASTGTEALAKAREAKPSLVVLDWMLPE--LSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R  S+V +I ++        L   + G DD + KP   RE+ AR+ ++ RR++ 
Sbjct: 63  EVCRELRKSSRVGIIMVTARIEETDKLIGLEVGADDYMTKPFSLRELAARIRSVLRRIEG 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+    + G + +              PL   E ++L  L +  G   ++ Q+  A  
Sbjct: 123 ESVTEEMLKRGDLTISETQCRVWKHDREIPLTPTEFKLLLTLASRPGVVYSRLQLLQAAM 182

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              D   +E   ++HIS++RKK+  +      + +    GY  +
Sbjct: 183 -EDDIHNDERTADAHISRIRKKIEDDPAEPVFIKTVYGFGYRFE 225


>gi|326386564|ref|ZP_08208186.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208879|gb|EGD59674.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 188

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 8/188 (4%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVD 96
           + + ++ DV  ++  L   G   L L + +RA     P++ +S   S    +    +G D
Sbjct: 1   MATDSQFDVVVLDRMLP--GMDGLSLLKAMRAADVDTPVLMLSALGSTDDRVSGLTAGAD 58

Query: 97  DVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152
           D + KP    E+LARV A+ RR     K        G + +    R  +  G    L  R
Sbjct: 59  DYLGKPFSFAELLARVQALIRRRSGPAKAQETGLRCGDLELDRLTRVVKRGGRKIALQPR 118

Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212
           E R+LEYLM ++G+ V +T +  A++  +      NV++ HIS+LR+K+ +        +
Sbjct: 119 EFRLLEYLMLHQGEVVTRTMLLEAVWD-YHFDPGTNVIDVHISRLRRKIDDGEAQVLFHT 177

Query: 213 KRFLGYSI 220
            R  GY +
Sbjct: 178 VRGAGYRL 185


>gi|319764284|ref|YP_004128221.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330826433|ref|YP_004389736.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317118845|gb|ADV01334.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329311805|gb|AEB86220.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 222

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +    L   +  +++     +  +   ++ + D+  ++  L  +    L
Sbjct: 7   LLLVEDDTMIGEAVRDLLRAEHYAVDWATDGDMADAALATQQYDLVLLDLGLPRR--DGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA     P++  +    +   ++  D+G DD V KP    E+LAR+ A+ RR  
Sbjct: 65  AVLRSLRARKDRTPVLIATARDGVAQRVEGLDAGADDYVLKPYDAGELLARIRALLRRAS 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   + +    R+  VQG    L  RE  +LE L+A  G  +++ QI   +YG
Sbjct: 125 GRAEPVYEHQGVTLNPGTREATVQGRPVVLSAREWAVLEPLIARPGMVLSRQQIEDKLYG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE V  N VE ++  LRKKL    G   V + R LGY +
Sbjct: 185 WGDE-VSSNAVEVYVHGLRKKL----GAHIVLNVRGLGYMV 220


>gi|299143988|ref|ZP_07037068.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518473|gb|EFI42212.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 230

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G  +    + E    +      ++  ++  L   G    
Sbjct: 5   ILLVEDEDAIRKFVKINLEREGYDVYEAPTGEDGVAIAREVHPEIVVLDVMLP--GIDGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ RI+R    ++ ++ ++        +     G DD + KP +  E+  R+ ++ RRL+
Sbjct: 63  EVCRILRGEFPELGIVMLTAKTEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLE 122

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N     P ++ +  R      E   L   E +I++  M N GK + + +I + 
Sbjct: 123 PEEHTNKNLIIFPPFKLDTYSRKFYKGDEELELTPTEYQIMKNFMQNPGKALNRDEILNL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           ++G  D   +  +V+ +I +LR K+         +++   LGY 
Sbjct: 183 VWGE-DFVGDSKIVDVNIRRLRSKIEENAAKPKFIETVWGLGYR 225


>gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G  +E   S +  + L+ +    +  I   L       LE
Sbjct: 5   LLAEDDTSISEPLARALRREGYQVEV--SPDGPQALERALSGGIDLIVLDLGLPEMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA     P++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR--G 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++       +R+ +D R   +  +   L  +E  +L  L+ + GK V + QI   ++   
Sbjct: 121 TSETPVVQGVRIDADSRRAWMGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDT- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +       ++ HIS LR+KL +       + + R +G+  +
Sbjct: 180 NWWGSTKTLDMHISWLRRKLGDDAAKPRYITTVRGVGFRFE 220


>gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
 gi|151283163|gb|ABR91573.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
          Length = 230

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G +++  N+      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVMLPD--IDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R A + VP + ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  KILHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRRGN 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S   +R +   + +    R     G+   L  +E  +LE+L+ ++G+ + ++ I S I+
Sbjct: 121 PSPLVDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DI-NFNSDTNVIDVAIRRLRAKMDDDYDPKLISTIRGVGYVLE 222


>gi|239815564|ref|YP_002944474.1| osmolarity response regulator [Variovorax paradoxus S110]
 gi|239802141|gb|ACS19208.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 243

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD A ++D        +G  +      +     +   R+ V  I   L+  GE  L
Sbjct: 11  IVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALN--RILLRDTVDLIVLDLMMPGEDGL 68

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +RA +   P+I ++        +   + G DD + KP + RE+LARV A+ RR  
Sbjct: 69  SVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRP 128

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     GP       R  +  GE   L   E  +L+ L+ +  + +++ 
Sbjct: 129 PLEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  IS+LRK +  +      + +   +GY  
Sbjct: 189 KLAQLARGR-EFEPFDRSLDVQISRLRKLVEADAAAPRYIQTVWGVGYVF 237


>gi|15887970|ref|NP_353651.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15155576|gb|AAK86436.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 225

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +         G  ++                 DV+ ++  +   G   L
Sbjct: 3   ILLVEDDNTTGNYVTKGLASAGHIVDWVKDGREALAAGLDGGYDVAIVDRMIP--GLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA S ++P++ ++    +   ++  ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  NLVKSLRAASIRIPILFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELTARINALVRRPP 120

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++    R   G + +    R     G+   L  RE  +LE LM N G+ + KT     I+
Sbjct: 121 ITTEKTRLRVGDLEMNLVTRTTSRGGQRIDLLPREFSLLELLMRNEGRILTKTMFLEKIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F+   + +VVE+HIS+LR K+        + + +  GY++
Sbjct: 181 N-FNFDPQSSVVETHISRLRAKIDKPFDQPLLHTVKNTGYTL 221


>gi|209516256|ref|ZP_03265114.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. H160]
 gi|209503367|gb|EEA03365.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. H160]
          Length = 228

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D   +   + G  ++     E   +L +    DV  ++  L  +     
Sbjct: 3   LLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMYLATEFDYDVIVLDVMLPKR--DGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R     P+I ++    +   +     G DD + KP    E++ R+ A+ RR + 
Sbjct: 61  SVLKALRMRKSTPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTRS 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + V   GR     G    L  +E ++L  L   +G  ++KT I   ++ +
Sbjct: 121 QESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 -NFDSHTNVVETAIKRLRAKLDGPFPSKLLHTVRGMGYVLEV 221


>gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Herminiimonas
           arsenicoxydans]
 gi|133738671|emb|CAL61716.1| Transcriptional regulatory protein CusR [Herminiimonas
           arsenicoxydans]
          Length = 230

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 101/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G +++  N+      L  +   D+  ++  L        
Sbjct: 3   LLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPD--IDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R A + VP + ++    +   +   + G DD V KP    E+LARV  + RR  
Sbjct: 61  KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S   +R +   + +    R     G+   L  +E  +LE+L+ ++G+ + ++ I S I+
Sbjct: 121 PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DI-NFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVLE 222


>gi|24112549|ref|NP_707059.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 2a
           str. 301]
 gi|26247378|ref|NP_753418.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           CFT073]
 gi|30062677|ref|NP_836848.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 2a
           str. 2457T]
 gi|74311689|ref|YP_310108.1| DNA-binding transcriptional regulator PhoP [Shigella sonnei Ss046]
 gi|82544383|ref|YP_408330.1| DNA-binding transcriptional regulator PhoP [Shigella boydii Sb227]
 gi|82777259|ref|YP_403608.1| DNA-binding transcriptional regulator PhoP [Shigella dysenteriae
           Sd197]
 gi|91210286|ref|YP_540272.1| DNA-binding transcriptional regulator PhoP [Escherichia coli UTI89]
 gi|110641307|ref|YP_669037.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 536]
 gi|110805158|ref|YP_688678.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 5
           str. 8401]
 gi|117623315|ref|YP_852228.1| DNA-binding transcriptional regulator PhoP [Escherichia coli APEC
           O1]
 gi|157159002|ref|YP_001462399.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           E24377A]
 gi|170681232|ref|YP_001744047.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           SMS-3-5]
 gi|187730593|ref|YP_001879938.1| DNA-binding transcriptional regulator PhoP [Shigella boydii CDC
           3083-94]
 gi|191168321|ref|ZP_03030113.1| DNA-binding response regulator PhoP [Escherichia coli B7A]
 gi|191173098|ref|ZP_03034631.1| DNA-binding response regulator PhoP [Escherichia coli F11]
 gi|193066242|ref|ZP_03047294.1| DNA-binding response regulator PhoP [Escherichia coli E22]
 gi|194429552|ref|ZP_03062073.1| DNA-binding response regulator PhoP [Escherichia coli B171]
 gi|194433627|ref|ZP_03065903.1| DNA-binding response regulator PhoP [Shigella dysenteriae 1012]
 gi|194437080|ref|ZP_03069179.1| DNA-binding response regulator PhoP [Escherichia coli 101-1]
 gi|209918387|ref|YP_002292471.1| DNA-binding transcriptional regulator PhoP [Escherichia coli SE11]
 gi|218553708|ref|YP_002386621.1| DNA-binding transcriptional regulator PhoP [Escherichia coli IAI1]
 gi|218558012|ref|YP_002390925.1| DNA-binding transcriptional regulator PhoP [Escherichia coli S88]
 gi|218689083|ref|YP_002397295.1| DNA-binding transcriptional regulator PhoP [Escherichia coli ED1a]
 gi|218694664|ref|YP_002402331.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 55989]
 gi|218700347|ref|YP_002407976.1| DNA-binding transcriptional regulator PhoP [Escherichia coli IAI39]
 gi|218704604|ref|YP_002412123.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           UMN026]
 gi|227886513|ref|ZP_04004318.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 83972]
 gi|237706884|ref|ZP_04537365.1| virulence transcriptional regulatory protein phoP [Escherichia sp.
           3_2_53FAA]
 gi|253773846|ref|YP_003036677.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161237|ref|YP_003044345.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B str.
           REL606]
 gi|256018614|ref|ZP_05432479.1| DNA-binding transcriptional regulator PhoP [Shigella sp. D9]
 gi|260843446|ref|YP_003221224.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O103:H2 str. 12009]
 gi|260854812|ref|YP_003228703.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O26:H11 str. 11368]
 gi|260867559|ref|YP_003233961.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O111:H- str. 11128]
 gi|293409496|ref|ZP_06653072.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B354]
 gi|293414421|ref|ZP_06657070.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B185]
 gi|293433418|ref|ZP_06661846.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B088]
 gi|298380261|ref|ZP_06989866.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           FVEC1302]
 gi|300816833|ref|ZP_07097053.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821086|ref|ZP_07101235.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300896841|ref|ZP_07115336.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300922660|ref|ZP_07138757.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300928312|ref|ZP_07143848.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300938702|ref|ZP_07153426.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300975596|ref|ZP_07173075.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300982385|ref|ZP_07176083.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301024584|ref|ZP_07188256.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301051080|ref|ZP_07197914.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|301328495|ref|ZP_07221561.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|306814020|ref|ZP_07448193.1| DNA-binding transcriptional regulator PhoP [Escherichia coli NC101]
 gi|307310093|ref|ZP_07589743.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309788200|ref|ZP_07682806.1| transcriptional regulatory protein phoP [Shigella dysenteriae 1617]
 gi|309796524|ref|ZP_07690931.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331646389|ref|ZP_08347492.1| transcriptional regulatory protein PhoP [Escherichia coli M605]
 gi|331652181|ref|ZP_08353200.1| transcriptional regulatory protein PhoP [Escherichia coli M718]
 gi|331657194|ref|ZP_08358156.1| transcriptional regulatory protein PhoP [Escherichia coli TA206]
 gi|331662541|ref|ZP_08363464.1| transcriptional regulatory protein PhoP [Escherichia coli TA143]
 gi|331667531|ref|ZP_08368395.1| transcriptional regulatory protein PhoP [Escherichia coli TA271]
 gi|331682636|ref|ZP_08383255.1| transcriptional regulatory protein PhoP [Escherichia coli H299]
 gi|332279682|ref|ZP_08392095.1| DNA-binding response regulator in two-component system response
           regulatory system with PhoQ [Shigella sp. D9]
 gi|81724595|sp|Q83RR0|PHOP_SHIFL RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|81741528|sp|Q8CXZ9|PHOP_ECOL6 RecName: Full=Transcriptional regulatory protein phoP
 gi|26107779|gb|AAN79978.1|AE016759_252 Transcriptional Regulatory protein phoP [Escherichia coli CFT073]
 gi|24051444|gb|AAN42766.1| transcriptional regulatory protein [Shigella flexneri 2a str. 301]
 gi|30040925|gb|AAP16655.1| transcriptional regulatory protein [Shigella flexneri 2a str.
           2457T]
 gi|73855166|gb|AAZ87873.1| transcriptional regulatory protein [Shigella sonnei Ss046]
 gi|81241407|gb|ABB62117.1| transcriptional regulatory protein [Shigella dysenteriae Sd197]
 gi|81245794|gb|ABB66502.1| transcriptional regulatory protein [Shigella boydii Sb227]
 gi|91071860|gb|ABE06741.1| transcriptional regulatory protein [Escherichia coli UTI89]
 gi|110342899|gb|ABG69136.1| transcriptional regulatory protein PhoP [Escherichia coli 536]
 gi|110614706|gb|ABF03373.1| transcriptional regulatory protein [Shigella flexneri 5 str. 8401]
 gi|115512439|gb|ABJ00514.1| transcriptional regulatory protein PhoP [Escherichia coli APEC O1]
 gi|157081032|gb|ABV20740.1| DNA-binding response regulator PhoP [Escherichia coli E24377A]
 gi|170518950|gb|ACB17128.1| DNA-binding response regulator PhoP [Escherichia coli SMS-3-5]
 gi|187427585|gb|ACD06859.1| DNA-binding response regulator PhoP [Shigella boydii CDC 3083-94]
 gi|190901616|gb|EDV61373.1| DNA-binding response regulator PhoP [Escherichia coli B7A]
 gi|190906643|gb|EDV66249.1| DNA-binding response regulator PhoP [Escherichia coli F11]
 gi|192926091|gb|EDV80733.1| DNA-binding response regulator PhoP [Escherichia coli E22]
 gi|194412426|gb|EDX28727.1| DNA-binding response regulator PhoP [Escherichia coli B171]
 gi|194418056|gb|EDX34149.1| DNA-binding response regulator PhoP [Shigella dysenteriae 1012]
 gi|194424063|gb|EDX40051.1| DNA-binding response regulator PhoP [Escherichia coli 101-1]
 gi|195182817|dbj|BAG66393.1| two-component response regulator protein [Escherichia coli O111:H-]
 gi|209911646|dbj|BAG76720.1| two-component transcriptional regulator [Escherichia coli SE11]
 gi|218351396|emb|CAU97102.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli 55989]
 gi|218360476|emb|CAQ98030.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli IAI1]
 gi|218364781|emb|CAR02471.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli S88]
 gi|218370333|emb|CAR18136.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli IAI39]
 gi|218426647|emb|CAR07475.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli ED1a]
 gi|218431701|emb|CAR12583.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli UMN026]
 gi|222032882|emb|CAP75622.1| Transcriptional regulatory protein phoP [Escherichia coli LF82]
 gi|226898094|gb|EEH84353.1| virulence transcriptional regulatory protein phoP [Escherichia sp.
           3_2_53FAA]
 gi|227836717|gb|EEJ47183.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 83972]
 gi|242376932|emb|CAQ31653.1| phoP [Escherichia coli BL21(DE3)]
 gi|253324890|gb|ACT29492.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973138|gb|ACT38809.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli B str. REL606]
 gi|253977352|gb|ACT43022.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli BL21(DE3)]
 gi|257753461|dbj|BAI24963.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O26:H11 str. 11368]
 gi|257758593|dbj|BAI30090.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O103:H2 str. 12009]
 gi|257763915|dbj|BAI35410.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O111:H- str. 11128]
 gi|281178240|dbj|BAI54570.1| two-component transcriptional regulator [Escherichia coli SE15]
 gi|281600563|gb|ADA73547.1| Virulence transcriptional regulatory protein phoP [Shigella
           flexneri 2002017]
 gi|291324237|gb|EFE63659.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B088]
 gi|291434479|gb|EFF07452.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B185]
 gi|291469964|gb|EFF12448.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B354]
 gi|294490321|gb|ADE89077.1| DNA-binding response regulator PhoP [Escherichia coli IHE3034]
 gi|298279959|gb|EFI21467.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           FVEC1302]
 gi|300297252|gb|EFJ53637.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300307222|gb|EFJ61742.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300359323|gb|EFJ75193.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300396509|gb|EFJ80047.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300410259|gb|EFJ93797.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300421009|gb|EFK04320.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300456347|gb|EFK19840.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300463698|gb|EFK27191.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300526385|gb|EFK47454.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300530607|gb|EFK51669.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300845102|gb|EFK72862.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|305852657|gb|EFM53105.1| DNA-binding transcriptional regulator PhoP [Escherichia coli NC101]
 gi|306909811|gb|EFN40305.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307553131|gb|ADN45906.1| DNA-binding response regulator PhoP [Escherichia coli ABU 83972]
 gi|307627398|gb|ADN71702.1| DNA-binding transcriptional regulator PhoP [Escherichia coli UM146]
 gi|308119836|gb|EFO57098.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|308924052|gb|EFP69553.1| transcriptional regulatory protein phoP [Shigella dysenteriae 1617]
 gi|312945692|gb|ADR26519.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313650392|gb|EFS14799.1| transcriptional regulatory protein phoP [Shigella flexneri 2a str.
           2457T]
 gi|315060407|gb|ADT74734.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli W]
 gi|315287473|gb|EFU46884.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315293102|gb|EFU52454.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315296599|gb|EFU55894.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320175636|gb|EFW50728.1| Transcriptional regulatory protein PhoP [Shigella dysenteriae CDC
           74-1112]
 gi|320179170|gb|EFW54128.1| Transcriptional regulatory protein PhoP [Shigella boydii ATCC 9905]
 gi|320184387|gb|EFW59198.1| Transcriptional regulatory protein PhoP [Shigella flexneri CDC
           796-83]
 gi|320195867|gb|EFW70492.1| Transcriptional regulatory protein PhoP [Escherichia coli
           WV_060327]
 gi|320201026|gb|EFW75610.1| Transcriptional regulatory protein PhoP [Escherichia coli EC4100B]
 gi|323153124|gb|EFZ39389.1| transcriptional regulatory protein phoP [Escherichia coli EPECa14]
 gi|323163674|gb|EFZ49496.1| transcriptional regulatory protein phoP [Escherichia coli E128010]
 gi|323165638|gb|EFZ51425.1| transcriptional regulatory protein phoP [Shigella sonnei 53G]
 gi|323172493|gb|EFZ58130.1| transcriptional regulatory protein phoP [Escherichia coli LT-68]
 gi|323179334|gb|EFZ64904.1| transcriptional regulatory protein phoP [Escherichia coli 1180]
 gi|323185686|gb|EFZ71047.1| transcriptional regulatory protein phoP [Escherichia coli 1357]
 gi|323187618|gb|EFZ72925.1| transcriptional regulatory protein phoP [Escherichia coli RN587/1]
 gi|323379033|gb|ADX51301.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323947566|gb|EGB43570.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323953183|gb|EGB49049.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323957956|gb|EGB53668.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323962729|gb|EGB58307.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323967069|gb|EGB62495.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323973280|gb|EGB68469.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323976499|gb|EGB71587.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324005953|gb|EGB75172.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324013223|gb|EGB82442.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|324017498|gb|EGB86717.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324117299|gb|EGC11206.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|327253834|gb|EGE65463.1| transcriptional regulatory protein phoP [Escherichia coli STEC_7v]
 gi|331045141|gb|EGI17268.1| transcriptional regulatory protein PhoP [Escherichia coli M605]
 gi|331050459|gb|EGI22517.1| transcriptional regulatory protein PhoP [Escherichia coli M718]
 gi|331055442|gb|EGI27451.1| transcriptional regulatory protein PhoP [Escherichia coli TA206]
 gi|331060963|gb|EGI32927.1| transcriptional regulatory protein PhoP [Escherichia coli TA143]
 gi|331065116|gb|EGI37011.1| transcriptional regulatory protein PhoP [Escherichia coli TA271]
 gi|331080267|gb|EGI51446.1| transcriptional regulatory protein PhoP [Escherichia coli H299]
 gi|332089268|gb|EGI94374.1| transcriptional regulatory protein phoP [Shigella boydii 5216-82]
 gi|332092880|gb|EGI97948.1| transcriptional regulatory protein phoP [Shigella dysenteriae
           155-74]
 gi|332094417|gb|EGI99466.1| transcriptional regulatory protein phoP [Shigella boydii 3594-74]
 gi|332102034|gb|EGJ05380.1| DNA-binding response regulator in two-component system response
           regulatory system with PhoQ [Shigella sp. D9]
 gi|332758319|gb|EGJ88642.1| transcriptional regulatory protein phoP [Shigella flexneri 4343-70]
 gi|332767375|gb|EGJ97569.1| response regulator [Shigella flexneri 2930-71]
 gi|333004967|gb|EGK24487.1| transcriptional regulatory protein phoP [Shigella flexneri VA-6]
 gi|333005526|gb|EGK25044.1| transcriptional regulatory protein phoP [Shigella flexneri K-218]
 gi|333008362|gb|EGK27836.1| transcriptional regulatory protein phoP [Shigella flexneri K-272]
 gi|333019381|gb|EGK38664.1| transcriptional regulatory protein phoP [Shigella flexneri K-304]
 gi|333019849|gb|EGK39121.1| transcriptional regulatory protein phoP [Shigella flexneri K-227]
          Length = 223

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R++   +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221


>gi|227537308|ref|ZP_03967357.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242811|gb|EEI92826.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 234

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V +  I    +DG  +           +  +   D+  ++  L       L
Sbjct: 4   ILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAVDLVILDILLPQ--MNGL 61

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           ++ + IR   ++ +P++ ++   S +  +   D+G DD ++KP    E+ AR+  + RR 
Sbjct: 62  DVCKAIRDSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLLRRK 121

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    ++ N       +++    +      +   L   E R+L   M +  K   +
Sbjct: 122 SEISKSVQSQLKNEVYRYSVLKLDDYQKVAYCNDQELNLTSTEYRLLLLFMRSPKKVFMR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++   ++G+ +  +  NVV+ +++ LR+K+        + +   +GY +
Sbjct: 182 SELLDEVWGI-NFDIGSNVVDVYVNYLRRKIEKHSPMKLIHTVIGMGYVL 230


>gi|206562306|ref|YP_002233069.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038346|emb|CAR54301.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 223

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEAKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPE--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR  +
Sbjct: 61  EVLRRLRAQKQTPVLLLTARDAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|157374930|ref|YP_001473530.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157317304|gb|ABV36402.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 224

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+         + G  ++   + +   +  ++   D++ ++  L  +    +
Sbjct: 3   ILVVEDDPLLSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDIAIVDLGLPDQ--DGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLIQNLRDAGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +  +G + V    +   +  E   +   E  ILEYLM +  + VAK ++   IYG
Sbjct: 121 GFVKPQITSGALEVDLAAKQVSLNNEPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL      +PV + R  GY  +
Sbjct: 181 --DKEGDPNTIEVMVSRLRKKLTKGGIENPVVTIRGQGYKFN 220


>gi|89096132|ref|ZP_01169025.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088986|gb|EAR68094.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 230

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++G+++    + +  E L+      V  I   ++      + 
Sbjct: 7   LVVDDEKEIRDAIEIYLKNEGITV--LKAGDGIEALEMLNEHQVHLIVLDVMMPNLDGIS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR    +P+I +S        +     G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATYKIREKKNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVSF 124

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      +   + +  + ++ +V GE   L   E +I+E LM N G+  +  +I+  
Sbjct: 125 GTFEGIRKVVDLNGLTLEKETKEVKVNGEPVKLTPIEYKIVELLMLNAGRVFSIQEIYEL 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++       E N V  HI K+R+K+  +      +     +GY ++
Sbjct: 185 VWKEPGYNAE-NTVAVHIRKIREKIEIDAKNPRYLKVVWGVGYKME 229


>gi|310828574|ref|YP_003960931.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740308|gb|ADO37968.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 232

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          DG   E   + +  E L+         +   ++  G    
Sbjct: 5   IIIIDDDPKLCALLEKCVTCDGF--EAACASDGREGLEKLEEGSPVLVVLDVMMPGLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP++ ++        +     G DD + KP    E  ARV ++ RR  +
Sbjct: 63  EVLRKIRETSAVPVLMLTARDDNIDKVYGLRLGADDYLTKPFDINEFSARVHSLVRRYTI 122

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N        R     + +  D R   V G    L  +E  IL YL  N+G+ + K QI+
Sbjct: 123 LNGSGEEILGRLSFKNLEIDPDRRLVTVCGRGIELQAKEFDILYYLAKNKGRALTKKQIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++   +   +++ + +HISK+R+ +  +      + + + +GY  +
Sbjct: 183 EEVW-QEEYLYDDSNIMAHISKIRRLIEPDSKKPTYIQTIKGVGYRFN 229


>gi|268607886|ref|ZP_06141617.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 223

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 97/222 (43%), Gaps = 3/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         ++G +++          +    + D+  ++  L        
Sbjct: 4   LLLVEDDKEIIVNLTEFLSNEGFTVKNVTGQAAALDIIEKEKFDLVLLDVSLAD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I++    P+I ++      +T+  FD G DD + KP   RE+++R+  + R    
Sbjct: 62  AVCSAIKSDGATPVIFLTASSDEFSTVTGFDLGADDYIAKPFRPRELISRIKNVLRLTGN 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + +  + G + V +        G    L   E R+L   + NRG  +++T++  +I+ + 
Sbjct: 122 TGSVTQLGDVLVDTVKGTASKNGNDLYLSALEYRLLLVFINNRGAVLSRTKLLESIWDIA 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
            E V +N +  +I +LR+K+ +       + + R LGY +D 
Sbjct: 182 GEYVNDNTLTVYIKRLREKIEDDPQDPKIIRTVRGLGYKVDV 223


>gi|260600057|ref|YP_003212795.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis
           z3032]
 gi|260219404|emb|CBA34756.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis
           z3032]
          Length = 231

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D             ++G   + FN+        S  + D+  ++  L    G ++
Sbjct: 9   ILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQI 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   +  + P++ ++   +++  +   + G DD + KP    E++ARV  + RR +
Sbjct: 69  ISALRE--SGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 126

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + V    R     G+   L  +E  +LE L+   G+ + ++ I S ++ 
Sbjct: 127 SQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV++  + +LR K+ +      + + R  GY ++
Sbjct: 187 M-NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLE 227


>gi|239928855|ref|ZP_04685808.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437180|ref|ZP_06576570.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291340075|gb|EFE67031.1| response regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 221

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 99/223 (44%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +         +    D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVVLDIMLP--GLNGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA    VP++ ++         +  D+G DD + KP  +  ++ARV A+ RR +
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRQ 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++     G +RV +  R   +  +   L  +E  +LE L+   G+ V+K +I   ++
Sbjct: 121 GAGASPVHVHGDLRVDTAARRVFLGEDEVALTAKEFSVLEQLVLRAGEVVSKAEILEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F    + N+VE ++S LR+KLR  L    + + R  GY ++
Sbjct: 181 D-FAYEGDPNIVEVYVSALRRKLRAGL----IRTVRGAGYRLE 218


>gi|110597968|ref|ZP_01386249.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340417|gb|EAT58906.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 231

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 96/228 (42%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +           G + +   S E      S    D+  ++  L   G   
Sbjct: 5   LLLVVEDDRNLSKLLEFNLERAGYACKISESGENAFEQLSRKCFDLILLDIMLP--GMNG 62

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            EL + I+ H     +P+I ++        +  F+ G+DD V KP   RE+  R+ A+ +
Sbjct: 63  FELCQKIKQHQIYKDIPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAVLK 122

Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +  + + +       I +               L   E ++L  L+  +G+  ++  +
Sbjct: 123 RDRRKSAKMQEILNGDGIVIDLSRHRVTSDQRELELTLMEFKLLVALLKRKGEAQSRETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S ++ + D  +    +++HI++LR+KL  K   + + + R +GY  +
Sbjct: 183 LSDVWDV-DRNINTRTIDTHITRLREKLGEKG--NLIKTLRGIGYKFE 227


>gi|288561544|ref|YP_003428950.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
 gi|288548176|gb|ADC52058.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
          Length = 231

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G ++    ++  +E L+         I   ++       
Sbjct: 5   ILIVDDEWNMRNLIRIHLSKQGYNI--VEAVNGKEALKEMKCHSFQLIILDVMMPEMDGW 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+   IR  +  +P++ ++        +   D G DD + KP    E++ARV A+ RR  
Sbjct: 63  EVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAV 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +     +++  D     VQ     L  +E  +L+ L+ N  +   + Q+   
Sbjct: 123 VNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           I+G+ D   +E  V+SHI  +R KL+ + L F  +++   +GY +
Sbjct: 183 IWGV-DFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKL 226


>gi|256843981|ref|ZP_05549468.1| DNA-binding response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|262046126|ref|ZP_06019089.1| DNA-binding response regulator [Lactobacillus crispatus MV-3A-US]
 gi|256613886|gb|EEU19088.1| DNA-binding response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|260573456|gb|EEX30013.1| DNA-binding response regulator [Lactobacillus crispatus MV-3A-US]
          Length = 225

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +++  +         + GF        +  + R D+  ++  L    E   
Sbjct: 4   IWCVEDDESIREIEMYTLEAMNFKVRGFEDGHSFFKVLDNNRPDLVILDLMLPD--EDGS 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   ++  S    +P+I  S   +    +   DSG DD + KP    E+++RV A+ RR
Sbjct: 62  EILHRLKYTSATEDLPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRR 121

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   ++ E   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I
Sbjct: 122 TNRKKEDKIEKDGIKILLKRHEVFENGRQVDLTLKEYGLLKLLITHPGTVFSREEIMDQI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +      VE   V+ H+  LR+KL        +++ R +GY 
Sbjct: 182 WETG-FYVETRTVDVHVRTLRQKLGEAG--KYIETLRGVGYR 220


>gi|229513612|ref|ZP_04403076.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TMA 21]
 gi|229349489|gb|EEO14445.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TMA 21]
          Length = 228

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      S    D+  ++  +       +
Sbjct: 4   ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSD-EIDLILLDVMMP--KLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R     P++ ++        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 61  ETLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQS 120

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +++  E   I+V+   ++   QG++  L   E  +L + + + G  + K  +   
Sbjct: 121 GLTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           + G    A +   ++ H+S LRKKL     G   + + R  GY
Sbjct: 181 VLGKHLAAFD-RAIDMHVSNLRKKLPERPDGKARIKTLRGRGY 222


>gi|169824596|ref|YP_001692207.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302380339|ref|ZP_07268809.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303235188|ref|ZP_07321807.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|167831401|dbj|BAG08317.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302311829|gb|EFK93840.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302493675|gb|EFL53462.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 229

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          D  ++    +    + L+   +  +      ++ +G   L
Sbjct: 4   IMVVDDEKDIVKAIEIYLKTDNYNV--LKAYNGFDALELMEKNKIDLFLVDIMMEGMDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S  P+I +S    L   +   + G DD + KP    E+LAR+ +  RRL++
Sbjct: 62  ELTQKIREVSNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLRRLEL 121

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S       N    G + +  D ++  + GE   L   E  I+  L+ N+G      +I+ 
Sbjct: 122 SKDKSLNGNIFSAGRLTINDDKKEVLIDGEEIKLTPYEYGIILLLLKNKGIVFTSEEIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++      V + +V  HIS+LR+K+  N    D + S   +GY I+
Sbjct: 182 NVWEAPPYDV-KKIVSVHISRLREKVEINPRRPDLIKSVYGMGYKIE 227


>gi|332526604|ref|ZP_08402711.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332110867|gb|EGJ11044.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 224

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE--- 58
            +L++D  ++ +   A    +G +++    +       +S R D   ++  L   G    
Sbjct: 3   LLLVEDDRMIGESLRAALRLEGHAVDWVRDVAAARATLASERFDCVLLDLGLPPGGPPGS 62

Query: 59  ---KVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                L++ R +R  +   P+I ++   +    +   D+G DD + KP    E+ AR+ A
Sbjct: 63  PPADGLDVLRELRGRADTTPVIVLTARDASGDRVRGLDAGADDYLVKPFEFDELTARIRA 122

Query: 115 IYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR    +      G + +    R     G+   L  RE  +LE LM   G  +++ Q+
Sbjct: 123 VTRRHGGRAAPLLTHGGVTLDPATRQVTKDGQPVLLSSREFAVLEALMQRPGAVLSRAQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +YG  D AVE N V  ++ +LR+KL    G D + + R +GY +
Sbjct: 183 EDRLYGWGD-AVESNAVSVYVHQLRRKL----GADFIRNMRGVGYFL 224


>gi|160935401|ref|ZP_02082783.1| hypothetical protein CLOBOL_00296 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441759|gb|EDP19459.1| hypothetical protein CLOBOL_00296 [Clostridium bolteae ATCC
           BAA-613]
          Length = 222

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 92/220 (41%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    + L   +G +     + E           D+  ++  L        
Sbjct: 4   ILIVEDDRDIAGNLLLLLKKEGFTAVAVGTREESLEQIRRESFDLVLLDLMLPD--GNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+  + +P+I ++     ++ +  F+ G DD + KP    E+++RV  + RR   
Sbjct: 62  SVCTAIKREADIPVIFLTAMGDEESVVTGFELGADDYIAKPFRPLELVSRVKNVLRRRGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +    G + V +        G+   L   E R+    +  +G+ + + ++   I+ + 
Sbjct: 122 SRSVLRAGDLLVDTVKGTVTRDGQEIILSALEYRLFLVFLNRQGEVLTRNRLLEEIWDIA 181

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + V +N +  +I +LR K+  +    + +++ R  GY +
Sbjct: 182 GDYVNDNTLTVYIKRLRDKIEKDPAHPEIIETVRGRGYKV 221


>gi|332799978|ref|YP_004461477.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697713|gb|AEE92170.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 225

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +   +  +++  +  E       S   D+  ++  L       +
Sbjct: 3   ILIVEDELHLAEALTQILKKNNYTVDAVHDGESGLDNALSGIYDLIILDIMLP--KMNGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR      P+I ++    +   +   DSG DD + KP    E+LAR+ A+ RR  
Sbjct: 61  SILKHIRKQEIATPVILLTAKGEISDKVMGLDSGADDYLPKPFATEELLARIRALSRRKG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + ++  + G I + +         +   L  +E  +LE+LM  +    +K  I   ++
Sbjct: 121 DILPDSSLKYGDIELDALNLKLSKDSKDVKLTLKESELLEFLMLRKNIVTSKELIIEKLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G FD  VE N VE +IS LRKKL        + + R +GY ++
Sbjct: 181 G-FDSEVEPNNVEVYISFLRKKLSFLNSKVSIVTVRGVGYILE 222


>gi|296314968|ref|ZP_06864909.1| transcriptional regulatory protein OmpR [Neisseria polysaccharea
           ATCC 43768]
 gi|296838165|gb|EFH22103.1| transcriptional regulatory protein OmpR [Neisseria polysaccharea
           ATCC 43768]
          Length = 225

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD AL+ +        +G+++      E       S + DV  +++ +       L+
Sbjct: 5   LLVDDDALLTELLTEYLNAEGLNVHSVPDGEAGVQEILSGQYDVVVLDSMMP--KMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR + S
Sbjct: 63  VLKNVRAQSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQHS 122

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI--- 173
                  N      + ++   R   V+     L   E  +LE LM + G+ V+K  +   
Sbjct: 123 GEQNNAPNSISVSDVVLYPAKRQASVKDTPLELTSTEFNLLEVLMRHAGQVVSKETLSVE 182

Query: 174 -FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-----RSIDVHISSIRHKLGDA---SLIQTVRGLGYLFVKN 225


>gi|291167113|gb|EFE29159.1| transcriptional regulator FeuP [Filifactor alocis ATCC 35896]
          Length = 225

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG  ++   + +    +  S   D+  ++  L   G   +
Sbjct: 3   ILVVEDEKTLCTSIANGLRIDGYEVDTCFNGDDAWDMALSESYDLIILDLNLP--GMDGM 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R IR   S+  ++ +S    LQ  +D  D+G +D + KP H  E+ ARV ++ RR  
Sbjct: 61  DVLRSIREEDSETGILILSARGQLQDKIDGLDNGANDYLCKPFHFEELEARVRSLTRRRV 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V NN   E G + + +  R    +G VF L R+E  +LEYLM ++ + V + ++   ++ 
Sbjct: 121 VQNNLVLECGELALDTKARTVSARGTVFSLTRKEFGLLEYLMLHQDRPVGQEELIEHVW- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D +V+   N +  HIS LRKKL+  LG+DP+ ++   GY I
Sbjct: 180 --DASVDSFSNSIRVHISALRKKLKAVLGYDPIVNRVGQGYII 220


>gi|229079179|ref|ZP_04211727.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228704105|gb|EEL56543.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
          Length = 229

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 4   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLP--GIDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  ++ + +I ++     +  +     G DD + KP     + AR+ ++ RR++
Sbjct: 62  EVCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 121

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 122 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 182 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 223


>gi|229164006|ref|ZP_04291943.1| Two-component response regulator vanRB [Bacillus cereus R309803]
 gi|228619389|gb|EEK76278.1| Two-component response regulator vanRB [Bacillus cereus R309803]
          Length = 216

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPD--IDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR      
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 125 R----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++G 
Sbjct: 120 ETATILHFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 215


>gi|42782234|ref|NP_979481.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987]
 gi|42738159|gb|AAS42089.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987]
          Length = 226

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D  ++++     F  DG  +      +    L ++   +VS I   ++        
Sbjct: 5   LIIEDEKIIRETVAHYFSHDGYDVITAEDGQIGLELFAAHDHEVSLIILDIMLPVMDGWS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP+I ++       TL  F+ G DD V KP     +LAR   +++    +
Sbjct: 65  ICRRIRKSSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPAILLARAKRLFKDTNQN 124

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      IR+    R   + G+       E  IL+ LM ++ + + + Q+ + I+G
Sbjct: 125 LQFQDCIHLCGIRLDKSARSVSIDGQKIDFTHTEYEILQSLMEHKEQVLTREQLITNIWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   ++  + +H+  +R KL  K     + +    GY  + 
Sbjct: 185 -YDYDGDDKTLTAHMRNVRLKLGEK--AKHITTVVRTGYKFEV 224


>gi|24375906|ref|NP_719949.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350882|gb|AAN57393.1|AE015875_9 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 225

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +  F + G ++E  +         +S + D+  ++  L       L
Sbjct: 3   ILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLLQATSGQYDLLILDRMLPQ--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA     P++ +S    +   +    +G DD + KP    E+L R   + +R +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +   G +++    R+  + G    L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 STPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|295092131|emb|CBK78238.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 230

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        + ++ +  +S +   +L S+ +  +  ++  +   G    
Sbjct: 4   ILIIDDDKELCELLQRSVLVENINADVCHSGKDGIFLLSTKQYQLIVLDIMMP--GLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  S +P++ ++      + +    +G DD + KP    E +ARV ++ RR   
Sbjct: 62  ETMERIREKSNIPILMLTAKSDSLSKVRGLRAGADDYLTKPFDVDEFVARVISLIRRSTQ 121

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +       +     + +  D      +   F LP +E  +L YL  N+GK + K QI+ 
Sbjct: 122 FSVIDDTFGQLVYKGLEINLDEHSVTTEKGTFELPHKEFELLLYLARNQGKILTKKQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           A++   +   ++  +   ISKLRKK+  +      + + + +GY  
Sbjct: 182 AVWNE-EYCFDDANIMVMISKLRKKIEPDSDKPSIIQTVKGMGYRF 226


>gi|146339743|ref|YP_001204791.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|148254517|ref|YP_001239102.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146192549|emb|CAL76554.1| putative Two-component transcriptional regulator; putative
           transcriptional regulator involved in heavy-metal
           (Cu/Zn) homeostasis [Bradyrhizobium sp. ORS278]
 gi|146406690|gb|ABQ35196.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 234

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D  +  F + G   +     E    +  S   DV  ++  L  +    L
Sbjct: 11  LLIIEDDRESADYLVKAFREVGHVADLAGDGEEGLAMAESGDYDVLVVDRMLPKR--DGL 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R   ++ P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 69  SLIGALRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 128

Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +           +   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 129 GPAEETTYKVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 189 D-YHFDPQTNVIDVHISRLRSKIDKGFDRPLLHTIRGAGYMI 229


>gi|296137843|ref|YP_003645086.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296025977|gb|ADG76747.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 232

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +          +G  +      E    L       V  ++  L       LE
Sbjct: 10  LVIEDEPALGRLVRDYLTREGFDVTVAMDGERGLQLARELDPAVIILDIGLPR--IDGLE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++        +     G DD + KP   RE++ARV A+ RR +  
Sbjct: 68  VCRSLRRFSDAYVLMLTARGDETDKIVGLSVGADDYLVKPFSPREVVARVRAMLRRPRRM 127

Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + A      G + +   GR+  +  +   L   E  +L  L  +     +++Q+  A++
Sbjct: 128 PDGAGTDRTYGDLAIDLLGREVRIGEKEIDLTATEFDVLAVLARSPNVAFSRSQLIEAVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           G      +E +V+ H+ ++R+KL +  G    V + R +GY +
Sbjct: 188 GAG-WVGDERLVDVHVGRVRRKLGDDAGDPRYVRTVRGVGYRM 229


>gi|294501956|ref|YP_003565656.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294351893|gb|ADE72222.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 227

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   +         ++G  ++          +    +  ++ ++  L   G    E
Sbjct: 10  LLIDDEPTILQFLSLGLTNEGFDIKATQDGIEGINVAKEFKPHIAIVDVMLP--GMDGFE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R+++    + +I ++    +   +     G DD + KP    E+LAR+ A   R +  
Sbjct: 68  VCRLLKKMGDIAVIMLTAKDQVDDRVKGLTIGADDYMVKPFSFEELLARIQARI-RNQFP 126

Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           N  +    GP ++    ++ +    +  L   E  +L++L+ N G  ++K+ I   ++G 
Sbjct: 127 NLLDEVSIGPFKIDDRRKEIKYLNHILDLSPTEYALLKFLVINHGLVLSKSTILDRVWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   EEN+VE +I  LR+KL++      + + R +GY ID
Sbjct: 186 YDFGGEENIVEVYIRSLREKLQDH-SRTVIRTLRGVGYRID 225


>gi|194292693|ref|YP_002008600.1| response regulator in two-component regulatory system with cops,
           regulation of copper resistance [Cupriavidus taiwanensis
           LMG 19424]
 gi|193226597|emb|CAQ72548.1| response regulator in two-component regulatory system with CopS,
           regulation of copper resistance [Cupriavidus taiwanensis
           LMG 19424]
          Length = 241

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +   +       + G  ++  ++    + +  +   D+  ++  L        
Sbjct: 3   LLVVEDESKTGEYLRQGLTEAGFVVDLVHNGLDGQHMAMTEPYDLIILDVMLPDV--DGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + +RA    VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVQALRAGQNPVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++ +R +   + +    R     G    L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 AQMTLDRIQVADLVLDLTRRRATRAGRRITLTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDGFDARLIQTVRGMGYVLE 222


>gi|38639703|ref|NP_943472.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae]
 gi|218697172|ref|YP_002404839.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989]
 gi|38016801|gb|AAR07822.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae]
 gi|218353904|emb|CAV00324.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989]
 gi|238549690|dbj|BAH66041.1| copper resistance two-component system response regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 228

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D             ++G   + FN+        S  + D+  ++  L    G ++
Sbjct: 6   ILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQI 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   +  + P++ ++   +++  +   + G DD + KP    E++ARV  + RR +
Sbjct: 66  ISALRE--SGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 123

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + V    R     G+   L  +E  +LE L+   G+ + ++ I S ++ 
Sbjct: 124 SQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV++  + +LR K+ +      + + R  GY ++
Sbjct: 184 M-NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLE 224


>gi|309790009|ref|ZP_07684584.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227952|gb|EFO81605.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 227

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +      +  ++  +++  +  E    L      +++ ++  L  +     
Sbjct: 3   LLIIEDDQRLARLMRRMLAEEHYTIDVAHDGEEGLDLALQGVYEIAIVDWMLPSR--DGP 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IRA  + + L+ ++    L+  +   DSG DD + KP    E+LARV A+ RR  
Sbjct: 61  TICRAIRAARTPMALLLLTARGQLEDRVKGLDSGADDYLVKPFAFEELLARVRALSRRFT 120

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S    +    G I +            V  L   E  +LEYLM N G  +++ QI   +
Sbjct: 121 PSGSDTSELRVGEIVLDLRSHTARRGNRVLDLTPTEWNLLEYLMRNVGLSLSRQQILDYV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++  V+  +V+ +IS LR+KL      DP+ + R +GY ++
Sbjct: 181 W-SYERDVQIALVDVYISYLRRKLNAPGESDPIMTVRGVGYRLE 223


>gi|257439558|ref|ZP_05615313.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Faecalibacterium prausnitzii A2-165]
 gi|257198005|gb|EEU96289.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Faecalibacterium prausnitzii A2-165]
          Length = 232

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++IDD   +          + +S +  +N +E    L    ++  S I   ++       
Sbjct: 5   LIIDDDKELCALMKKCIEQEKLSAVTVYNGIEGVR-LIDENKDSYSLIILDVMLPDIDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S +P++ ++   S +  +     G DD + KP    E+LARV ++ RR   
Sbjct: 64  QILQKIRDTSNIPVLMLTAKSSEEDKVFGLRLGADDYLTKPFGINELLARVNSLIRRYTT 123

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N      +      + +    R   V+     L  +E  +L +L +N+G+   K QI+S
Sbjct: 124 LNPFTADIDSISLKDMVIDKLNRTVTVKDIPVLLTGKEFDLLLFLASNKGRVFTKKQIYS 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            ++   + A +++ + S ISKLRKK+         + + R +GY  +
Sbjct: 184 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPDHPFYILTVRGVGYRFN 229


>gi|310780216|ref|YP_003968548.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749539|gb|ADO84200.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 225

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G S++  +       L      ++  ++  L        
Sbjct: 4   ILIIEDEKKISRYLQLELEHEGYSVDIASDGIMALKLFGENFYNIILLDLMLP--KLSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++      + ++  D G DD + KP    E+LAR+    R  K 
Sbjct: 62  EVCRRIRKKSDVPVIVLTATDKTFSKINLLDLGADDYITKPFIIGELLARIRVALRHNKE 121

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++        IR+  + +   VQ E   L + E  +L YL+ NR   +++ +I + I+
Sbjct: 122 FSDKGQVISYEGIRLDLNKKLVIVQEEEISLTKTEFNLLHYLILNREIVLSREKILNNIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D    E +V+ +I  LRKK+ +      + + R  GY +
Sbjct: 182 G-YDYNGGEKIVDVYIKSLRKKV-DFREKKLIHTVRGFGYML 221


>gi|256821572|ref|YP_003145535.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256795111|gb|ACV25767.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 232

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +          +G  +   +       L      D+  ++  L        
Sbjct: 4   LLLADDDTELCQLLHEYLTQEGFEVALAHDGATAAKLILDHSFDLMVLDVMLPN--LNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQVP++ ++        +   + G DD + KP + RE+ AR+  I RR + 
Sbjct: 62  DVLKTVRKESQVPILMLTARGDEIDRIVGLELGADDYIAKPCNPRELTARIRTILRRTEN 121

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +           G + +    R+  +  EV  L   E  IL  LM+N G  V++  + 
Sbjct: 122 VYSTKHKKLQSVHLGDVYINPASREVLLNNEVVKLTATEFDILYLLMSNAGTLVSRDDLS 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
               G   EA +   ++ HIS LR+KL  +  G + + + R +GY
Sbjct: 182 EGCLGRTLEAYD-RSIDMHISNLRRKLGPDTKGDERIKTVRGVGY 225


>gi|171059687|ref|YP_001792036.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170777132|gb|ACB35271.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 221

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ D   A     G  ++        E    +     + ++  L   G+  +
Sbjct: 3   ILLVEDDPLLGDALRAGLRQQGFQVDWVREGPAAERELLTGAYQAAVLDLGLP--GKDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P++ ++   +++  +   D G DD V KP+   E+ AR+ A+ RR  
Sbjct: 61  EVLADLRRRKIATPVLVLTARAAVRDRVHCLDLGADDYVVKPVDLDELAARLRALVRRAH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    RD   +GE   L  RE  +L  L+ N G+ + + QI   +Y 
Sbjct: 121 GQVEDNLRVGEVELRPGSRDVFFRGERIALAVREFDLLHALLLNAGRVLTRDQIEQHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   VE N +E HI  LRKKL      + +++ R +GY I
Sbjct: 180 SWGREVESNAIEVHIHHLRKKL----APELIETVRGVGYMI 216


>gi|163867915|ref|YP_001609119.1| two-component system regulatory protein [Bartonella tribocorum CIP
           105476]
 gi|161017566|emb|CAK01124.1| two-component system regulatory protein [Bartonella tribocorum CIP
           105476]
          Length = 222

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   +     E   +L S+   D   ++  L    + V 
Sbjct: 3   ILIVEDDRNLHHQLAEAVRQAGYVYDSAFDGEEAYFLGSTESYDAVILDIGLPYI-DGVR 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + +  +    +P++ ++        +   D+G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  VVEKWRQEGHTMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHLEEVMARLRALIRRTTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +    G + + +      V G++  L   E R+L YLM +  + +++T++   +Y  
Sbjct: 122 HATSALCCGNVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCDRVISRTELTEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N VE  + +LRKKL    G D +++ R +GY +
Sbjct: 182 -DFDKDSNTVEVFVGRLRKKL----GVDLIETIRGMGYRV 216


>gi|158521332|ref|YP_001529202.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158510158|gb|ABW67125.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 234

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   ++      F +  + +      L+  + + +    D+  ++  L       
Sbjct: 5   ILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPD--IDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  + IRA SQVP+I ++        +   + G DD ++KP + RE+LAR+ A+ RR  
Sbjct: 63  FETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRAT 122

Query: 121 VSNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            S   A            G + +   GR     G    +   E  IL  L++++G  + +
Sbjct: 123 ASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            ++     G  D    +  ++ HIS++RKKL +       + +    GY 
Sbjct: 183 DRLLDLASGR-DFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYM 231


>gi|88857640|ref|ZP_01132283.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
 gi|88820837|gb|EAR30649.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
          Length = 246

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + + +     + G  +   N  +    L  +   ++  ++  L  K     
Sbjct: 14  IMLVEDDMSLAEWFGDYLTEHGYLVTLVNRGDAAVELIRTDLPELVVLDIMLPVK--DGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +  RA  Q P++ ++        +   + G DD V KP+  R +L+R+ A+ RR   
Sbjct: 72  DVCKEARAFYQGPILMMTARDDEMDEILGLELGADDYVTKPVKPRVLLSRIKALLRRSNT 131

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N             E G + + +  R  ++ G+   +   E  +L YL  + G+ V++T
Sbjct: 132 PNQPNAETNLNEGLIELGSLYIDAPSRAVKLHGQTIAISSNEFDLLWYLAQSAGQVVSRT 191

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           ++F+ + G  +    +  ++  IS+LRKKL +       + +    GY +
Sbjct: 192 ELFNQLRG-SEYDGFDRSIDIFISRLRKKLGDDANHPYRIKTVWGKGYLL 240


>gi|290352269|dbj|BAI78845.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +    +             D+  +E  L        
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLELMLPE--MDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|229015978|ref|ZP_04172939.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022195|ref|ZP_04178745.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739126|gb|EEL89572.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745338|gb|EEL95379.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQKVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|53804012|ref|YP_114372.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757773|gb|AAU92064.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 221

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  ++          +G  ++        E     A  D + +   L       L
Sbjct: 3   LLLAEDDRMIGQALCEGLNQEGFVVDWVQDGHQAELALKVAEADYALLLLDLGLPRLSGL 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L   +R     +P++ ++   SL   +   +SG DD + KP    E++AR+ A+ RR  
Sbjct: 63  DLLTDLRRRGAGIPVLILTARDSLSDRVLGLNSGADDYLVKPFELDELVARIHALVRRAA 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E GP+R+    R+  ++GE   L  RE  +L  L+   G  +++T++   +YG
Sbjct: 123 GRAEPVVEHGPLRLLPVKRECWLRGEPVELSAREFDLLYALLEKPGAVLSRTRLEERVYG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E V  N ++ HI  LRKKL    G   + + R +GY +
Sbjct: 183 WGQEVV-SNAIDVHIHHLRKKL----GPGFIVNVRGVGYRV 218


>gi|15642687|ref|NP_232320.1| transcriptional regulator CpxR [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121726722|ref|ZP_01679947.1| transcriptional regulator CpxR [Vibrio cholerae V52]
 gi|147675245|ref|YP_001218180.1| transcriptional regulator CpxR [Vibrio cholerae O395]
 gi|227082808|ref|YP_002811359.1| transcriptional regulator CpxR [Vibrio cholerae M66-2]
 gi|229507260|ref|ZP_04396765.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae BX 330286]
 gi|229509818|ref|ZP_04399299.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae B33]
 gi|229516940|ref|ZP_04406386.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae RC9]
 gi|229527383|ref|ZP_04416775.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae 12129(1)]
 gi|229606767|ref|YP_002877415.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae MJ-1236]
 gi|254851228|ref|ZP_05240578.1| transcriptional regulator CpxR [Vibrio cholerae MO10]
 gi|255744348|ref|ZP_05418300.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholera CIRS 101]
 gi|262158542|ref|ZP_06029657.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae INDRE 91/1]
 gi|262170064|ref|ZP_06037753.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae RC27]
 gi|298500492|ref|ZP_07010296.1| transcriptional regulator CpxR [Vibrio cholerae MAK 757]
 gi|9657287|gb|AAF95833.1| transcriptional regulator CpxR [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121630883|gb|EAX63265.1| transcriptional regulator CpxR [Vibrio cholerae V52]
 gi|146317128|gb|ABQ21667.1| transcriptional regulator CpxR [Vibrio cholerae O395]
 gi|227010696|gb|ACP06908.1| transcriptional regulator CpxR [Vibrio cholerae M66-2]
 gi|227014580|gb|ACP10790.1| transcriptional regulator CpxR [Vibrio cholerae O395]
 gi|229335015|gb|EEO00500.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae 12129(1)]
 gi|229346003|gb|EEO10975.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae RC9]
 gi|229353292|gb|EEO18231.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae B33]
 gi|229354765|gb|EEO19686.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae BX 330286]
 gi|229369422|gb|ACQ59845.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae MJ-1236]
 gi|254846933|gb|EET25347.1| transcriptional regulator CpxR [Vibrio cholerae MO10]
 gi|255737873|gb|EET93266.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholera CIRS 101]
 gi|262021472|gb|EEY40184.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae RC27]
 gi|262029703|gb|EEY48352.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae INDRE 91/1]
 gi|297540661|gb|EFH76718.1| transcriptional regulator CpxR [Vibrio cholerae MAK 757]
 gi|327485164|gb|AEA79571.1| Copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae LMA3894-4]
          Length = 228

 Score =  214 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      S    D+  ++  +       +
Sbjct: 4   ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSD-EIDLILLDVMMP--KLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + +R     P++ ++        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 61  ETLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQN 120

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +++  E   I+V+   ++   QG++  L   E  +L + + + G  + K  +   
Sbjct: 121 GLTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           + G    A +   ++ H+S LRKKL     G   + + R  GY
Sbjct: 181 VLGKHLAAFD-RAIDMHVSNLRKKLPERPDGKARIKTLRGRGY 222


>gi|312886562|ref|ZP_07746170.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300965|gb|EFQ78026.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 228

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         D G  +           +    + D+  ++  L       ++
Sbjct: 4   LLVEDEPNIVSVIKRGLADFGFEISVATDGLTALQMTIDHQFDLVILDVMLPS--MDGIQ 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + IR     +P++ ++   S +  +   +SG DD + KP    E+  R+  + RR   
Sbjct: 62  LCKHIRERDENIPILMLTALDSTENIVTGLNSGADDYMVKPFKMIELATRLKTLLRRAGG 121

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           ++     N      + + +D +   V+     L   E R+LE+ + N+ K +++ Q+  +
Sbjct: 122 NSIQQPKNIYRIADLELDADAKIASVKQVPLNLTATEYRLLEHFIKNQRKVLSRIQLLES 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ + D  +  NVV+ +I+ LRKKL +K     + +   +GY +
Sbjct: 182 VWDI-DFNLGTNVVDVYINYLRKKLDSKNPAKYIQTVFGMGYMM 224


>gi|301156196|emb|CBW15667.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Haemophilus parainfluenzae T3T1]
          Length = 222

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+ +G        G  ++ F   +        A  D   ++  L       L+
Sbjct: 4   LLVEDDPLIGNGLQIGLTKSGFIVDWFTDGQSGLNALIGAPYDAVVLDLTLP--KLDGLD 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLK 120
           + +  R+++  VP++ ++   +L   +     G DD + KP    E++ R+ A+  RR  
Sbjct: 62  VLKQWRSNNQDVPVLILTARDTLDERIKGIQQGADDYLCKPFALAEVVVRLQALIRRRYG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E G +++    R   +  +   L  RE ++LE  M N+ + +++  I   +   
Sbjct: 122 QVKPQIEHGNVKLDPAQRKAWLNEDEITLTGREYKLLELFMLNKERVLSRATIEEKL-SN 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +DE +    ++ HI  LR+KL    G   + +   +GY++
Sbjct: 181 WDEELSSGALDVHIYNLRQKL----GKQFIRTVHGVGYAL 216


>gi|229188858|ref|ZP_04315891.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594563|gb|EEK52349.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 225

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVMKPFHEEELFARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHSEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219


>gi|225377220|ref|ZP_03754441.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM
           16841]
 gi|225210924|gb|EEG93278.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM
           16841]
          Length = 232

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 107/227 (47%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   +    + +   +  S++  ++  E  ++L++    D   ++  +       
Sbjct: 7   LLLAEDEEDLSRALVMVLKHNNYSVDAVYDGAEALDYLENGGNYDGVILDIMMP--KMDG 64

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           + + + IR H   VP++ ++    +   ++  DSG DD + KP   +E+LAR+ A+ RR 
Sbjct: 65  ITVLKTIRRHGNSVPVLLLTAKAEIDDRVEGLDSGADDYLPKPFSMKELLARIRAMTRRQ 124

Query: 119 LKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              ++N    G I +             E   L  +E ++LE LM+N G+ +        
Sbjct: 125 TDTTDNVLTFGDIALNRSTYQLTGPENPEGIRLAGKEYQMLEMLMSNPGQVICPDLFMDK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           I+G +D   E+NVV  +IS LRKKL +      + + R LGYS++ +
Sbjct: 185 IWG-YDSEAEQNVVWVYISYLRKKLTSIGSQVKIRAARGLGYSLEKD 230


>gi|126700252|ref|YP_001089149.1| two-component response regulator [Clostridium difficile 630]
 gi|254976231|ref|ZP_05272703.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093618|ref|ZP_05323096.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255101806|ref|ZP_05330783.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307673|ref|ZP_05351844.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255315366|ref|ZP_05356949.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518031|ref|ZP_05385707.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651147|ref|ZP_05398049.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|255656615|ref|ZP_05402024.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|260684213|ref|YP_003215498.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687872|ref|YP_003219006.1| two-component response regulator [Clostridium difficile R20291]
 gi|296449929|ref|ZP_06891693.1| response regulator [Clostridium difficile NAP08]
 gi|296878311|ref|ZP_06902319.1| response regulator [Clostridium difficile NAP07]
 gi|306520997|ref|ZP_07407344.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115251689|emb|CAJ69524.1| Two-component response regulator [Clostridium difficile]
 gi|260210376|emb|CBA64753.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213889|emb|CBE05918.1| two-component response regulator [Clostridium difficile R20291]
 gi|296261199|gb|EFH08030.1| response regulator [Clostridium difficile NAP08]
 gi|296430609|gb|EFH16448.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 109/229 (47%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKVL 61
           ++IDD   + +            +  ++   F+ ++++   + D+  ++  L       +
Sbjct: 6   LVIDDEMHIVELLKFNLEVSNYEVS-YSYDGFDGFIKAKEIKPDLILLDWMLPN--ISGI 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IR+      +P+I ++        ++  + G DD + KP   +E+LAR++++ RR
Sbjct: 63  EVLRKIRSDKDLKNIPVIMLTAKNMENDKVEGLEIGADDYITKPFSIKELLARISSVLRR 122

Query: 119 LKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             ++     NN   TG +++     +     E   L  +E  +L+ L+ N+GK +++  +
Sbjct: 123 YNLTSLGEENNILTTGNLKLDLSKHEVTKGSEKIELTLKEFELLKLLIQNKGKVLSRNYL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
              I+G ++   E   V+ HI  LRKK+ ++      +++ R +GY ID
Sbjct: 183 LDKIWG-YEYYGETRTVDVHIRYLRKKIEDEDKSEKYIETIRGVGYKID 230


>gi|229043767|ref|ZP_04191467.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|229069548|ref|ZP_04202837.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|228713687|gb|EEL65573.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|228725568|gb|EEL76825.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
          Length = 232

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +      G  +    + E    + S    D++ ++  L   G   L
Sbjct: 7   ILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLP--GIDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  ++ + +I ++     +  +     G DD + KP     + AR+ ++ RR++
Sbjct: 65  EVCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIE 124

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           V     N   +GP  +          G++  L   E  IL+YLM    K V++ +I + I
Sbjct: 125 VHEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMI 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +G  +   E  VV+ ++ +LR+K+  N    + + +    GY 
Sbjct: 185 WGT-NYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYV 226


>gi|256850876|ref|ZP_05556265.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661087|ref|ZP_05862001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282932666|ref|ZP_06338079.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
 gi|297205750|ref|ZP_06923145.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615938|gb|EEU21126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260548024|gb|EEX24000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303176|gb|EFA95365.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
 gi|297148876|gb|EFH29174.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 240

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 107/234 (45%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEK 59
            ++++D + V +     F  +  +++   + LE  + + +     D+  ++  L  K   
Sbjct: 5   ILMVEDDSSVAEMMELFFKKEQWNVDIARDGLEAVDKFKERPDYYDMITLDLNLPKK--D 62

Query: 60  VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +++ + +RA S+ VP+I ++   S    +   + G D+ V KP     ++AR+ A++RR
Sbjct: 63  GIQVAKEVRAISESVPIIMLTARDSESDQVLGLEIGADNYVTKPFSPIALIARIKALHRR 122

Query: 119 LKVSNNRAE----------TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKR 167
             + NN  +          T  +++    R+     +    L  +E  +L  +     + 
Sbjct: 123 AALENNDEDRKAKGDFDIVTNTLKISKIRREVYFLDKQIDGLTPKEFDLLYTMAQKPKQV 182

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ ++   ++G ++   EE  V++HI KLR+KL   +G   + +   +GY  D
Sbjct: 183 FSRDKLLELVWG-YEYYGEERTVDAHIKKLRQKLEE-VGPQIIQTVWGVGYKFD 234


>gi|254559323|ref|YP_003066418.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens DM4]
 gi|254266601|emb|CAX22371.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens DM4]
          Length = 220

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++ DG  A  G  G ++E   +    +   +++      ++  L       L
Sbjct: 3   ILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALATSGFAAVVLDLMLPD--GSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +R      P++ ++   ++   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DVLRGLRGRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   IR+        + G   P+ RRE  +L  LM       +K ++   +YG
Sbjct: 121 GRAAACLEHAGIRLDPAELAVTLHGRPIPVSRREFMVLAALMERPSVLRSKGELEERLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E VE N VE H+  LR K+    G   +++ R LGY +
Sbjct: 181 -WQEEVESNAVEVHVHNLRAKI----GKHTIETVRGLGYRM 216


>gi|254000175|ref|YP_003052238.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|313202139|ref|YP_004040797.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|253986854|gb|ACT51711.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
 gi|312441455|gb|ADQ85561.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 223

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D A++ D         G +++     +  +        D   ++  L       LE
Sbjct: 4   LLVEDDAVLGDAIHRSLIKSGYAVDWTQDGQQADVALHEQVYDAVVLDLGLPR--MDGLE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           + R +R   Q VP++ +S    L   +   D G DD + KP    E+ AR+ A  RR  +
Sbjct: 62  VLRRLRQRKQLVPVVILSAREGLDDRVHGLDLGADDYLTKPFKLPELEARLRAQIRRSHQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V  +  + GP+R  S  R   V G +    +RE  +LE L+   G+ V+K  +   +   
Sbjct: 122 VVTSYIDFGPMRFDSTDRTVTVNGALVEFSQRELSVLEALILRSGRVVSKESLVENLCN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D  V  N +E ++ +LRKKL        + + R LGY ++
Sbjct: 181 WDVDVGNNAIEVYVHRLRKKLEPYGI--LIRTVRGLGYLLE 219


>gi|90578546|ref|ZP_01234356.1| hypothetical DNA-binding response regulator [Vibrio angustum S14]
 gi|90439379|gb|EAS64560.1| hypothetical DNA-binding response regulator [Vibrio angustum S14]
          Length = 225

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++       + G  ++          + +S    +  ++  L       L+
Sbjct: 4   LVIEDDVTTREFIAQGLREHGFVVDEAEDGHQGLMMATSCEYQLIILDRMLPI--LDGLK 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA  ++ P++ +S   S++  +    +G DD + KP    E++AR   + +R + 
Sbjct: 62  VLAALRATENETPILILSAMDSVEDRVAGLTAGSDDYLTKPFALAELIARANILVKRHQS 121

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S   ++      +R+               L ++E  +L+YLM +    V++  +F +++
Sbjct: 122 SVNISSEYSYDDLRLDIKSHRVWRGSRELNLQQKEFLLLQYLMEHAESVVSRMSLFESVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HI+ LRKKL        + + R  GY +
Sbjct: 182 -SYHFDPKTNVIDVHIANLRKKLEEGGEPSLIHTVRGAGYVL 222


>gi|114330053|ref|YP_746275.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
 gi|114307067|gb|ABI58310.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
          Length = 227

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 98/225 (43%), Gaps = 6/225 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +      L  +   D+  ++  L        
Sbjct: 3   LLVVEDEIKTGEYVRQGLVESGFIVDLARTGLDGHHLALTEDYDLIILDVMLPDV--DGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A S  P++ ++   S++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVQALREAKSATPVLFLTARDSVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +++ +   + +    R    Q     L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 121 APALSDQLQVADLVLDIPRRRARRQEVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + +   + NV++  I +LR K+ +      + + R +GY +D +
Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDAFEPKLIHTVRGMGYMLDVS 224


>gi|294341285|emb|CAZ89694.1| Transcriptional regulatory protein cusR [Thiomonas sp. 3As]
          Length = 251

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 96/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +          A  D+  ++  L        
Sbjct: 27  LLIVEDEVKTGEYLQQGLRESGFVVDWARNGLDGHHHAMIAPYDLIVLDVMLPD--IDGW 84

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   +  P++ ++   +++  +   + G DD + KP    E+LARV  + RR +
Sbjct: 85  RILRSLRESGNNTPVLFLTARDAVEDRVKGLELGADDYLVKPFVFTELLARVRTLLRRGR 144

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ++ E   + +    R     G    L  +E  +LE L+  +G+ + ++ I S ++
Sbjct: 145 APTQIDQLEVADLVLDLPRRRATRAGTRINLSSKEFALLELLIRRQGEVLPRSLIASQVW 204

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV++  I +LR K+ +      + + R +GY++D 
Sbjct: 205 DM-NFDSDTNVIDVAIRRLRAKVDDGFEPKLIQTVRGMGYTLDV 247


>gi|240146411|ref|ZP_04745012.1| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
 gi|257201459|gb|EEU99743.1| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
 gi|291526354|emb|CBK91941.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291526803|emb|CBK92389.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 220

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++  +   G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSN-PLKINMEELHRYDLILLDIMMP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    ++ + +HI  +R K  +   + P+ +   +GY  +
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWE 219


>gi|126698685|ref|YP_001087582.1| two-component response regulator [Clostridium difficile 630]
 gi|115250122|emb|CAJ67943.1| Two-component response regulator, Tn1549-like,CTn4-Orf26
           [Clostridium difficile]
          Length = 230

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +  +  N+   +E LQ     +   +   ++  G    E
Sbjct: 5   LIIDDDKELCALIKRSVLSEDIEADFCNT--GKEGLQKLKEREYQLVILDIMMPGMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR  + +P++  +      + +    +G DD + KP    E++AR+ ++ RR    
Sbjct: 63  TLEEIRKENSLPILMFTSKNDSASKVRGLRAGADDYLTKPFDMDELIARIISLIRRYTRF 122

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N       + E   +++  + R    +   F LP +E  +L Y   N+GK + K QI+  
Sbjct: 123 NQQDGISQQLEFDGLKIDIENRSVTTENGTFELPPKEFDLLLYCAKNQGKILTKQQIYEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++   +   +++ + + IS+LRKKL  N      + + + +GY  +
Sbjct: 183 VW-REEYFYDDSNIMAIISRLRKKLEVNPGSPKYIQTIKGIGYRFN 227


>gi|291572104|dbj|BAI94376.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 236

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +E     E    L      D+  ++  L        
Sbjct: 6   ILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNLPDT--TGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +++ ++V ++ ++        +  FD G DD + KP    E+ ARV AI +R + 
Sbjct: 64  ALCQEMQSRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +    R+  ++     L   E  +L  L    G+   ++++   +
Sbjct: 124 VEETEMRSLTYGDLVIDPVRREVYIRDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +  ++   E+ VV+ HI ++RKK+         + + R +GY  D
Sbjct: 184 WD-YEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFD 227


>gi|251790853|ref|YP_003005574.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247539474|gb|ACT08095.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 232

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 103/226 (45%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A +          +G S      +  +E +  +  +  +A+   ++      +
Sbjct: 9   ILLVDDDAELGHMLCEYLTAEGFSTS--QVMTGKEGVDGAMSDQYTAMILDIMLPDMSGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R +  +P+I ++        +   + G DD V KP + RE++AR+ A+ RR + 
Sbjct: 67  DVLRQVRRNRSIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYED 126

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              ++E       G + +    R  E +G+ F L   E  +LE L+ +  + V K ++  
Sbjct: 127 KAEKSEDAGTINYGELVISPSTRSSEWRGKAFDLTASEFNLLELLIRSSERVVTKDELSE 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 187 KCLGRRREAYD-RSVDVHISNIRQKLAALDGCSLTIETVRSVGYRI 231


>gi|241765260|ref|ZP_04763241.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241365051|gb|EER59943.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 243

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +    L      D+  ++  +   GE  L
Sbjct: 11  ILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRLLLRETVDLIVLDLMMP--GEDGL 68

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA +   P+I ++        +   + G DD + KP + RE+LARV A+ RR  
Sbjct: 69  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRP 128

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     GP       R  +  GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 129 AQEAPGAPSGDNEVVTFGPFTFDLGTRALQRNGEELPLTTGEFAMLKALVRHPRQPLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 189 KLALLARGR-EFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|238022830|ref|ZP_04603256.1| hypothetical protein GCWU000324_02747 [Kingella oralis ATCC 51147]
 gi|237866033|gb|EEP67169.1| hypothetical protein GCWU000324_02747 [Kingella oralis ATCC 51147]
          Length = 222

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 111/223 (49%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            +L++D +++    +    DDG +++  N+    E   +    D+  ++  L G+ G +V
Sbjct: 3   ILLVEDDSMIAQAVVGSLKDDGYAVDWVNNGNTAETTLAGQNYDIILLDLGLPGQDGIQV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L+  R +R  +  P++ ++    +Q+ L   D G DD + KP    E+ AR+ AI RR  
Sbjct: 63  LQHTRALR--NATPILILTARDDIQSRLAGLDGGADDYIIKPFIMAELKARIRAILRRHA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++     G I++        ++G+     L ++E  +L+ L++  G   +++++   I
Sbjct: 121 GQASPLLRNGSIQLNPQTYQATLEGQPENILLSQKEFAVLQALISRAGIIHSRSELEDKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG + E VE N ++  I  LRKK+    G + + + R +G+ +
Sbjct: 181 YG-WGEEVESNAIDFLIHSLRKKI----GKEHIKNIRGVGWMM 218


>gi|284029757|ref|YP_003379688.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283809050|gb|ADB30889.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 232

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 97/228 (42%), Gaps = 16/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++++         G  +    + +  E +++  +    A+   ++  G   +
Sbjct: 10  ILMVEDDAVIREATQLTLERHGYDVT--TAEDGLEAIETFEKVHPDAVMLDVMLPGLDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + R IR  S VP++ +S        +   ++G DD V KP   + ++AR+ A+ RR   
Sbjct: 68  SVCRRIRETSLVPIVMVSARGDALDVVLGLEAGADDYVTKPFDTQVLVARLRAVMRRAVS 127

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G + +  +  +    G    L   E ++L     N G  ++++ 
Sbjct: 128 DPERPAPTSGAGVESFGDLELDREALEVRRGGSTVQLTPTELKLLIEFANNPGVVLSRST 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   ++  ++   +  +V+ H+ +LR K+    G D +++ R  GY +
Sbjct: 188 LLQRVWD-YEWGGDGRLVDVHLQRLRTKI----GADRIETVRGFGYKL 230


>gi|262199161|ref|YP_003270370.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262082508|gb|ACY18477.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 243

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D A +          +G      +      E L      D   ++  L       
Sbjct: 13  ILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPD--ISG 70

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ + +R       VP+I ++   +    +  F+ G DD V KP   RE++ R+ A+ R
Sbjct: 71  TEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLR 130

Query: 118 RLKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R +   +         +RV  +G    V  +   L   E R+L   ++ RG+   +  + 
Sbjct: 131 RTERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTRDALL 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           S ++G+ +  V    V++H+ +LR+KL +      V++ R +GY  
Sbjct: 191 SDVWGI-EADVTTRTVDTHVKRLREKLGDAG--RYVETLRGVGYRF 233


>gi|218442075|ref|YP_002380404.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174803|gb|ACK73536.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 228

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +       + G  ++     E  +WL +    D+  ++  +       L
Sbjct: 3   ILLVEDDLEQLEPLSFALSETGHIIDAVQDGETAQWLINEKEYDLLILDWMIPN--ISGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L    R   +  P++ ++   +    +   D+G DD + KP+   E+LARV A+ RR  
Sbjct: 61  QLCTYYRYLGKTSPVLMLTAKDTTLDKVTGLDAGADDYLVKPVDLLELLARVRALGRRSP 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +  +   + +  +    E       L  RE ++LEY M +  + + + QI  +++ 
Sbjct: 121 LWQGDSLKIEDLSLDLNSLKLERNSVTIELSVREFQLLEYFMRHPQQVLTREQIEQSLWE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +E  E N V + I +LRK+L+       +++   +GY ++
Sbjct: 181 WGNE-PESNAVSTLIRRLRKRLQLVEVHHWIETVYGVGYRLN 221


>gi|157412490|ref|YP_001483356.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387065|gb|ABV49770.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 248

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +    + + +E L+     D   +   ++       
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKV--VTASDGKEALKLFKDYDPDLVVLDVMMPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++       I++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGY 234


>gi|238788573|ref|ZP_04632366.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia frederiksenii ATCC 33641]
 gi|238723486|gb|EEQ15133.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia frederiksenii ATCC 33641]
          Length = 235

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D           F +   S++  ++     +L      D   ++  L   G    
Sbjct: 3   LLIVEDEEKTSSYIRRAFLELSYSIDVADNGNDGLYLAIENDYDAIILDVMLP--GLDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +RA  Q P++ +S   ++   +    SG DD + KP    E++AR+ A++RR+  
Sbjct: 61  SLLEYLRAEKQTPVLMLSARSTVDERVRGLRSGADDYLPKPFSLIELVARIQALHRRMSK 120

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            NN         +++    R     G    L  +E  +L  L  ++GK ++K  I   ++
Sbjct: 121 DNNDPTHILIDDLQLDLIARKVSRGGIRIDLTAKEFSLLSLLARHQGKILSKMMIADEVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAIKRLRNKIDTPYAVKLLYTVRGMGYVLE 222


>gi|53724716|ref|YP_102097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121599835|ref|YP_993967.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|126449442|ref|YP_001079600.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|254203780|ref|ZP_04910140.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|52428139|gb|AAU48732.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121228645|gb|ABM51163.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|126242312|gb|ABO05405.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147745292|gb|EDK52372.1| DNA-binding response regulator [Burkholderia mallei FMH]
          Length = 247

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 180 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 219


>gi|332687311|ref|YP_004457084.1| vancomycin response regulator VanR [Melissococcus plutonius ATCC
           35311]
 gi|332371320|dbj|BAK22275.1| vancomycin response regulator VanR [Melissococcus plutonius ATCC
           35311]
          Length = 231

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+IDD   + D   +L   +G ++  F     + +++ S R +V  +   ++      L
Sbjct: 6   IVVIDDEKDICDLIASLLVSEGYTVSSF--YTGKNFIEYSERNEVPLLILDIMLPDIGGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR     P++ ++        L     G DD + KP +  E++ARV    RR+  
Sbjct: 64  EILKEIRKRKFFPILLLTAKNLDADKLVGLTLGADDYITKPFNSLEVVARVKTHLRRVNH 123

Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            NN+        E   + +        +  E   +   E  IL YL+ N G+ V   ++F
Sbjct: 124 YNNQTPEESYLLEYNGLTLNKKKYKIFLFDEEIKVTPIEFAILHYLLINSGRVVTSEELF 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            A++         N +  HI+++R+KL  N    + + +   +GY+I
Sbjct: 184 EAVWKEK-YMDSNNTIMDHIARIREKLHENPREPNYIKTVWGVGYTI 229


>gi|152995590|ref|YP_001340425.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836514|gb|ABR70490.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 228

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D    +   +  ++      E      ++  + V  I   ++       
Sbjct: 4   ILIIDDDVELSDLLKEVLSFENCAVSAAYDGEAG---LAAMDDSVDLILLDVMMPKLNGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R    VP++ ++        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 61  ETLKQLREKWDVPVLMLTAKGEEIDRVVGLELGADDYLPKPFSERELLARIRAILRRTQA 120

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 N+      I+++    +    G++  L   E  +L Y + + GK + K  +   
Sbjct: 121 GKGQQQNDVVTYRDIKLYPGRLEAYCNGDLLDLTSTEFALLHYFLLHPGKVLTKEDLSLD 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + G    A +   ++ H+S LRKKL +   G   + + R  GY +
Sbjct: 181 VLGKRLAAFD-RAIDMHVSNLRKKLPDWPNGKPRIKTLRGRGYLL 224


>gi|49475273|ref|YP_033314.1| two-component response regulator [Bartonella henselae str.
           Houston-1]
 gi|49238079|emb|CAF27286.1| Two-component response regulator [Bartonella henselae str.
           Houston-1]
          Length = 228

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G S++     E    L  +   DV  ++  L+ +    L
Sbjct: 3   ILVIEDDHETGRYLEKAFEEAGHSVDVAYDGETGYALAETENYDVMVVDRMLLHR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +RA     P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SIIAELRAKGNETPALILSALGQVNDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       +       L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDRNIILQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLYTIRGAGYML 221


>gi|119715669|ref|YP_922634.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536330|gb|ABL80947.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 248

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G         +         R D+  ++  L   G+  +
Sbjct: 28  ILVVDDDASLAEMLTIVLRQEGFESHMVARGDLAMEAFREYRPDLVLLDLMLP--GKDGI 85

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           ++ + IRA S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR   
Sbjct: 86  DVCKEIRAESGVPIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKELVARIRARVRRFDA 145

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + +   G      GE   L   E  +L  L     +   +  +   ++G 
Sbjct: 146 PAQETLTIGDLTIDVAGHAVTRAGERISLTPLEFDLLVCLARKPWQVFTREVLLEQVWG- 204

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
           +  A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 205 YRHAADTRLVNVHVQRLRSKVEHDPENPEIVVTVRGVGYK 244


>gi|330829011|ref|YP_004391963.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328804147|gb|AEB49346.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 242

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D A + D   A     G+             +  + + D+  ++  +       
Sbjct: 15  LVLIAEDEAEIADILAAYLQRHGLRSLHAADGREALAMHQAFKPDLLLLDVQMPQ--LDG 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++   IRA    P+I ++        L     G DD V KP +  E++ARV A+ RR +
Sbjct: 73  WQVLSEIRARGDTPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRTQ 132

Query: 121 ----VSNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                + N    G  ++  +  +  +    Q +V  L   E ++L  LM    +  ++ +
Sbjct: 133 AVKPATANVLRVGQFQIDLESHEASIFRDDQQQVLELTLTEFKLLASLMRAPKRVFSRAE 192

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +      D   +E  V+SHISKLRKKL          S   +GY  
Sbjct: 193 LLTHCLPEGD--TQERTVDSHISKLRKKLETHGIQGVPASVWGVGYRF 238


>gi|315638413|ref|ZP_07893591.1| phosphate regulon response regulator [Campylobacter upsaliensis
           JV21]
 gi|315481541|gb|EFU72167.1| phosphate regulon response regulator [Campylobacter upsaliensis
           JV21]
          Length = 229

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 96/222 (43%), Gaps = 10/222 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D A + +  +       ++ +GF  +E  +    +    +  ++  L        E+
Sbjct: 9   VLEDDANILELVLYALKSQNINAQGFLDIESFKKALKAEIPQILVLDVMLPNA--SGFEI 66

Query: 64  PRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + ++A+     + ++ ++        +   D G DD + KP    E +AR+ AI RR  
Sbjct: 67  LKELKANANTKNISVLMLTALNHEIDKVKGLDLGADDYITKPFSVMEFIARIRAILRRTS 126

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N        + +    R+ +V G V  L  +E  +L +L+ N+ +  ++  +   ++
Sbjct: 127 QEQNAENIVLDELELSYKTREVKVCGAVIVLTLKEFELLGFLLKNQNRVFSRDDLLEILW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +  + E   ++ HI  LR+KL   +    + + R +GY I
Sbjct: 187 G-YSYSGESRTIDIHIKTLRQKLG--IASRFIKTIRGVGYKI 225


>gi|311029642|ref|ZP_07707732.1| DNA-binding response regulator [Bacillus sp. m3-13]
          Length = 230

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +      +    G + +   S         S R D+  I+  L   G    
Sbjct: 7   ILIIEDDEDINRLLCNIVSKSGYTPKSAYSGTEAMIYLDSERWDMVLIDLMLP--GLSGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ +I+   S VP+I IS     Q+ +    +G DD + KP    E+ AR+ +  RR + 
Sbjct: 65  DILKIVTKESDVPIIIISAKLETQSKIAALRAGADDYITKPFDIEEVSARIDSCLRRYRD 124

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N      I +  D +   V G V  L  RE  IL  LM++  K   K  +F +
Sbjct: 125 IPSVSITNLMSNKDIVLDPDAKIVTVNGNVLKLTAREYEILLLLMSSPNKVFTKANLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++       ++N +  H+S +R KL +       +++   +GY +
Sbjct: 185 VWNEP-FYGDDNTINVHLSNIRNKLSKANPNEVYIETVWGMGYKL 228


>gi|295106656|emb|CBL04199.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 229

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M   ++D   ++D  +      G    GF +             ++  ++  L       
Sbjct: 1   MIYYVEDDTNIRDLTVYALKQAGFEAAGFAAAGEFFVACKRRLPELVLLDIMLPEV--DG 58

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+  ++R   A   +P++ ++   +   T+   D+G DD + KP    E+++RV A+ R
Sbjct: 59  LEILHMLREDPATKHLPVMMLTAKGTEFDTVSGLDAGADDYLAKPFGMMELVSRVNALMR 118

Query: 118 R----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R       +++    GPI +     D  V GE   L  +E  +L  LM N G  +++ Q+
Sbjct: 119 RAAAPAVAADDEFSCGPIALTVSSHDVSVDGENVALTLKEFDLLRTLMQNEGHVLSRRQL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220
              ++G+     E   V+ HI  LR+KL          + + R +GY +
Sbjct: 179 LEDVWGMT-YVGETRTVDVHIQTLRQKLAAAVEGADAYIQTVRGVGYCV 226


>gi|229825404|ref|ZP_04451473.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC
           49176]
 gi|229790408|gb|EEP26522.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC
           49176]
          Length = 236

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        DG  ++     E    + S    D+  ++  L       +
Sbjct: 15  ILVVEDEQELCESVAKGLRLDGYEVDTCFDGEEAWEIISVESYDLIILDLNLP--KLDGM 72

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IRA  ++  ++ +S    LQ  +D  DSG +D + KP H  E+ ARV ++ RR  
Sbjct: 73  EVLKNIRAEDNETSVLILSARGGLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRRV 132

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V NN   E G + + +  R    +GE   L R+E  ILEYL+ +R   V++ ++ S ++ 
Sbjct: 133 VQNNLVLECGELSLDTKARTVTAKGEELSLTRKELAILEYLILHREHPVSQEELISHVW- 191

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D +V+   N +  HIS LRKKLR  LG+DP+ ++   GY I
Sbjct: 192 --DGSVDSFSNSIRVHISALRKKLRTALGYDPITNRVGQGYMI 232


>gi|229165596|ref|ZP_04293370.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617879|gb|EEK74930.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 225

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVYAVSGEEAISHIENRNFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S VP+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   I          V  E   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 HA-QIQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYR 219


>gi|205353035|ref|YP_002226836.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272816|emb|CAR37742.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628114|gb|EGE34457.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 224

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL+         D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLLHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPD--EDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 63  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGYLFE 222


>gi|254444774|ref|ZP_05058250.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198259082|gb|EDY83390.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 226

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + +          +G+ +E  ++    E L    R    A+   ++      L 
Sbjct: 4   LVVEDESKLTSLIEKGLRCEGIEVE--STSSGLEALDQVKRFSYDAVVLDIMIHELDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA S + P+I I+        ++  D+G DD V KP    E++AR+ A++RR   
Sbjct: 62  VLKRMRAASIRTPVIIITARDMHNEKIEGLDAGADDYVVKPFFVDELVARLNAVWRRSLG 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + V    R+    G    +P +E  +L +LM   G+   + QIF  ++  
Sbjct: 122 QGLDVLSVDDLTVNLMTREVTRGGVKIDMPTKEFNLLVFLMKAPGRVFNRVQIFENVWN- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD   E N+V+ +I +LR+K+        +++ R +GY I
Sbjct: 181 FDFDPETNLVDVYIGRLRRKIDQGDSKKLLETVRGVGYRI 220


>gi|167822911|ref|ZP_02454382.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei 9]
          Length = 241

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 6   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPR--MSGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLC- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 183 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 222


>gi|148378962|ref|YP_001253503.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932237|ref|YP_001383344.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936363|ref|YP_001386892.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288446|emb|CAL82523.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928281|gb|ABS33781.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932277|gb|ABS37776.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 240

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++IDD   +      +   +G     + +   E+  +   +   D+  ++  L     +
Sbjct: 11  ILIIDDEEDIVRLIRTVLKKEGFQ-NIYYATNLEDGFKEFNKVEPDIIILDIMLPD--GE 67

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             EL + IRA S+VP++ +S        +  F  G DD + KP   +E+  RV A  RR 
Sbjct: 68  GYELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRY 127

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     N    GP  +     + +   E+  L  +E  ++ +   +  + ++K +I
Sbjct: 128 SYVENANEEKNILSFGPFELNISKAEFKKDREIIELKPKELALITFFAKHPNQIISKEKI 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              ++G  D    +N +  HI +LR+K+  +    + + + + LGY +
Sbjct: 188 CDNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234


>gi|307243929|ref|ZP_07526054.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492751|gb|EFM64779.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 227

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 93/222 (41%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            ++   +          ++ D+  ++  +        
Sbjct: 6   ILIVEDDKEILELTAEFLQAKNYLVDTATNGVECIKKFKESKYDMIILDIKMPN--LDGH 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              ++IR  S +P+I ++        +  F+ G DD + KP     +L R+ A+ RR   
Sbjct: 64  TTCKMIRNTSNIPIIFLTALSDESDQIKGFELGCDDYITKPFSFNLLLKRLEAVLRRSHN 123

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N       I +  +    +V+  V  L  +E  IL+ L+    + + +  +  +I+G
Sbjct: 124 ENKNTSLNFEDISLDLNTYTLKVKDAVVELTLKEFNILKELIEKYPQVITRETLLDSIWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   +  +V++HI  +RKK+    G   + + + +GY+++
Sbjct: 184 -YDYYGDSRIVDAHIKNIRKKI----GLPYIKTVKGIGYTLE 220


>gi|297565268|ref|YP_003684240.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849717|gb|ADH62732.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 217

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 99/219 (45%), Gaps = 7/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +    +      G       S E           D+  ++  L    E   E
Sbjct: 2   LLVEDDPSLSQTLLESLAAQGFKPRLATSAEAAWEALWRDPVDLIVLDVMLPEGEEAGFE 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R A    P++ ++   SL   +   + G DD + KP    E++AR+ A+ RR +V
Sbjct: 62  LAKELREAGFHQPILFLTARESLPDRVRGLEVG-DDYLAKPFALAELVARLRALARRGEV 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                + GP+ V  + R+   +G++  L  +E ++LE  + N G+   + ++   ++G  
Sbjct: 121 RPRVVQAGPLEVALEKREVRYRGQMVRLTAKEYQVLELFVINPGRIFTREEVLERVWGPG 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               + N+++ ++  LRKKL +    + +++ R LGY  
Sbjct: 181 -FESDSNLIDVYVKNLRKKLYD----NVIETVRGLGYRF 214


>gi|319795506|ref|YP_004157146.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315597969|gb|ADU39035.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 234

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+++D   +           G     F   +       +A  D++ ++  L       +
Sbjct: 4   IVVVEDEIDIASVVQDYLRHSGYETAHFADGQSALESIVAAPPDLTLLDIMLPR--LDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R  R H+  P+I ++        L   + G DD V KP   RE++ARV A+ RR   
Sbjct: 62  EVLRRAREHTAHPIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLRRTAP 121

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            N         ++E   + +        ++G    L RRE  +L+ L  + G+  ++ ++
Sbjct: 122 GNVPGVPGQAPQSEGPGLVLDDVHWRASLEGTPLNLTRREFGLLQVLSRHPGRIFSRARL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLG 217
               Y      V E  ++SH+  LR+KL       D + S   +G
Sbjct: 182 LELAYDDT-VDVTERAIDSHVKNLRRKLGAVSPAHDWIRSVYGVG 225


>gi|238752020|ref|ZP_04613504.1| Two-component system response regulator [Yersinia rohdei ATCC
           43380]
 gi|238709720|gb|EEQ01954.1| Two-component system response regulator [Yersinia rohdei ATCC
           43380]
          Length = 239

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A +          +G + E    L  +E + ++   D SA+   ++      +
Sbjct: 15  ILLVDDDAELGTMLREYLSGEGFNAE--LVLTGKEGITAALSGDYSALILDIMLPDMSGI 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R +R +S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 73  DVLRQVRQNSRIPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVMRRFDE 132

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   ++    G + +    R    QG+ F L   E  +LE L+ +  + V K ++ 
Sbjct: 133 RPDLSSTDDSAITLGNLTLSPSTRSSLWQGKPFDLTASEFNLLELLLRSPERVVTKDELS 192

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G   EA +   V+ HIS +R+KL         +++ R +GY I
Sbjct: 193 DKGLGRPREAYD-RSVDVHISNIRQKLAALPDNRLNIETVRSIGYRI 238


>gi|89894512|ref|YP_517999.1| hypothetical protein DSY1766 [Desulfitobacterium hafniense Y51]
 gi|219668942|ref|YP_002459377.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333960|dbj|BAE83555.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539202|gb|ACL20941.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 232

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 95/233 (40%), Gaps = 20/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++++D + + +        D + + GF+   S +  E L++    +   I   ++  G 
Sbjct: 4   ILIVEDDSSIAE-----LERDYLEVAGFDVTLSTDGVEGLRAIQNNEFDLIILDIMLPGL 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             LE+ + ++    +P++ +S        +     G DD + KP    E++ARV A    
Sbjct: 59  DGLEILKSMKEDKDIPVLLVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKAHIEN 118

Query: 119 LKVSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            +    R               +++  D R   V  +   L ++E  +L YL  N  +  
Sbjct: 119 YERLKERFNAGIKKRQSITIRGLKIEKDSRRVFVNHQEVNLAQKEFDLLLYLAQNPNRVF 178

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + ++F  I+GL +   +   V  HI+++R+K   +      +++    GY  
Sbjct: 179 GREELFERIWGL-ESLGDSATVTVHIARIREKTEIDPSKPQYIETVWGAGYRF 230


>gi|310828577|ref|YP_003960934.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740311|gb|ADO37971.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 229

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +  G +    +D  + L  F+  E  E L  +   D+  ++  L       
Sbjct: 8   ILIVEDDRALNQGLVLSLKNDSYTTLSAFSIKEAREKLTDNT-FDLIVLDVNLPD--GNG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL + IR  S VP+I ++        +   ++G DD + KP     + AR+AA+ RR +
Sbjct: 65  LELCQEIRRRSAVPIIFLTANDMEMDVVIGLENGGDDYITKPFSLAILRARIAALLRRSQ 124

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               NR +        D        +   L + E+++L+ L+ANRG  V +  +   ++G
Sbjct: 125 KERQNRIKIDAFTFDFDQMVFLKGEDELTLSKTEQKLLKLLLANRGTTVTRDLLLEKVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
              + V+EN +   I +LR KL +       + +   LGY
Sbjct: 185 DSMDFVDENALSVTIRRLRSKLEDNSSKPVYIQTVYGLGY 224


>gi|253701719|ref|YP_003022908.1| transcriptional regulator [Geobacter sp. M21]
 gi|251776569|gb|ACT19150.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 235

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++    +    +  +L   +S        ++ R D+  ++  L     + +
Sbjct: 12  ILVIDDEAAIRRFLHSALSSEEFTLHEADSGHGGLSAAAALRPDLILLDLGLPD--LEGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  SQVP+I +S        +   D+G DD + KP    E+LAR+ A  RR   
Sbjct: 70  EVIRRIREWSQVPIIVLSVREREDDKVAALDAGADDYLTKPFGVGELLARMRASLRRSAV 129

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++S     +G + V  + R   V+G    L   E  +L  L+ +  K +  +QI   I+G
Sbjct: 130 QLSEPVFSSGDLTVDLNLRRVTVEGGEVQLTPTEYDLLRLLITHADKVITHSQILKQIWG 189

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +  +  +  V+   IS LRKK+ R+      + ++  +GY +
Sbjct: 190 VAYQE-QPQVLRVTISNLRKKIERDPSRPRHITTEPGVGYRL 230


>gi|78061618|ref|YP_371526.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77969503|gb|ABB10882.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 220

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L++D  L+  G       +G +++     +     L+++    +          G  VL
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRATGYGLLLLDLGLPNRDGLSVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
              R  R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR   
Sbjct: 64  AALR--RRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVNRRHAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      GP+R+        +  +  PL  +E  +L  LM + G  +++ Q    +Y  
Sbjct: 122 RAQTTLVIGPLRLDPVKHLVWLNDDEVPLSPKEFVLLHELMRDPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDMIRTVRGVGYRI 216


>gi|291542174|emb|CBL15284.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 235

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 104/232 (44%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE--WLQSSAREDVSAIEAFLIGKGEK 59
            ++ +D A ++D  +      G  +   +  E     + +++   DV+ ++  +   G  
Sbjct: 4   ILVCEDEAAIRDFVVINLTRAGYDVVEADCGEAALQKYEENNGDFDVAILDVMMP--GID 61

Query: 60  VLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             ++ + +R  +  + +I +S        +     G DD V KP    E+LARV ++YRR
Sbjct: 62  GFQVCKELRNRNGGIGIIMLSAKTQEMDKVTGLMLGADDYVTKPFSPSELLARVDSLYRR 121

Query: 119 LKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + ++ + +E        +G   +    R     G++  L + E +I+EY  +N G  + +
Sbjct: 122 VALAQSHSENNFKEELKSGEFTLNLRNRALMKSGKMIELTQVEFQIMEYFFSNPGVALDR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
             I + ++G      E+ +V+ +I +LR K+ ++      + +   LGY  D
Sbjct: 182 IDILNHVWGDA-YVGEDKIVDVNIRRLRMKVEDEPSNPKHIITVWGLGYKWD 232


>gi|292488012|ref|YP_003530889.1| response regulator phoP [Erwinia amylovora CFBP1430]
 gi|292899230|ref|YP_003538599.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291199078|emb|CBJ46189.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291553436|emb|CBA20481.1| Response regulator phoP [Erwinia amylovora CFBP1430]
 gi|312172136|emb|CBX80393.1| Response regulator phoP [Erwinia amylovora ATCC BAA-2158]
          Length = 222

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L++        + G  ++     +  ++  +    D++ ++  L    E  + 
Sbjct: 4   LVVEDNPLLRHHLAVQLREMGHQVDAAEDAKEADYFLNEHTPDITLVDLGLPD--EDGMA 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R    + P++ ++     Q  ++  ++G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRTQEVRQPILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMRRNCG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +      L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIITLQPFQVDLSRRELTINDRQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAEHAQEVITTVRGQGYRFD 221


>gi|168704604|ref|ZP_02736881.1| phosphate regulon response regulator PhoB [Gemmata obscuriglobus
           UQM 2246]
          Length = 236

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 18/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            ++I+D   +       F  +G  +    +G   L   +    +A  DV  ++  L   G
Sbjct: 6   ILIIEDERGLTQTLTWYFNKEGYEVTVSGDGLEGLRKAQ----TALPDVVLLDLNLP--G 59

Query: 58  EKVLELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
              L++ R +RA      +P+I I+        +  +  G DD V KP +++ +L +V A
Sbjct: 60  MNGLDVCRELRAGERTRDIPIIMITAKTDETDQVVGYSLGADDYVGKPFNNKILLHKVKA 119

Query: 115 IYRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + RR +  +      +   +++         + E   L   E R+LE L+   G+  ++ 
Sbjct: 120 LLRRAQGQSEPGDVTDYSGVKIDRVRHRVTFEEEALDLTPTEFRLLECLVRQPGRAFSRK 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+  A  G  +  V E  ++ HI  LR+KL    G  D +++ R +GY  
Sbjct: 180 QLMEAAIG-DNSIVLERTIDVHIKTLRQKLTKAGGSADLIETVRSIGYRF 228


>gi|152977462|ref|YP_001376979.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026214|gb|ABS23984.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    +   +E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEIEGYEV--LTAASGKEALERWEDGPDVLILDVMLPD--IDG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++     G I V    R   V GE   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 TKREVPQNHEVIRAGEIVVCPKERKVHVNGEEVQLTYREFNLCKLFVSNPQRVFMREELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL+       + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLKASGEH--IKTIYGVGYKLDC 223


>gi|329571904|gb|EGG53582.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1467]
          Length = 209

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 15/195 (7%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVD 96
           L  S + D   ++  L   G   LE+ + +R      P++ ++        +   + G D
Sbjct: 13  LALSNQYDFIILDVMLP--GMDGLEITKALRREKIDTPILILTAKDEQVDKIIGLEIGAD 70

Query: 97  DVVNKPIHHREILARVAAIYRRLKVSNNR----------AETGPIRVFSDGRDPEVQGEV 146
           D + KP   RE+LAR+ AI+RRLK +                G IRV     +  V+ + 
Sbjct: 71  DYLTKPFSPREVLARMKAIFRRLKPTTTEPLQEDTPKAPLVIGEIRVDEQNYEVFVRNQP 130

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKL 205
             L  +E  +L Y M  + + + +  +   I+  +D A +  +V+ HIS LR K+  +  
Sbjct: 131 IELTPKEFELLVYFMKRKDRVINRETLLERIW-QYDFAGQSRIVDVHISHLRDKIEPDPK 189

Query: 206 GFDPVDSKRFLGYSI 220
               + + R  GY  
Sbjct: 190 RPVYLVTVRGFGYRF 204


>gi|304440255|ref|ZP_07400145.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371304|gb|EFM24920.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 231

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 99/229 (43%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G  +  + +   EE ++ +  ED+  +   ++  G    
Sbjct: 5   ILLVEDEDAIRKFIKINLEREGYDV--YEAGTGEEGIEIADSEDIKIVVLDVMLPGIDGF 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R     + +I ++        +     G DD + KP +  E+  R+ ++ RR+ 
Sbjct: 63  KVCETLRKKYKDLGIIMLTAKAEDYDKIMGLQYGTDDYMTKPFNPTELTLRIKSLERRVI 122

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +     N  E+   ++ +  R     G+   L   E  I++  + N+G+ + + ++ +
Sbjct: 123 PEDEEDKKNIIESDIFKMDTYSRKFYKAGKELDLTPTEFLIMKTFLENKGRAITREELLN 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
            ++G  +   +  +V+ +I +LR K+  +      +++   LGY   WN
Sbjct: 183 KVWGE-EFIGDSKIVDVNIRRLRSKIEGDSADPKYIETVWGLGYR--WN 228


>gi|332306808|ref|YP_004434659.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174137|gb|AEE23391.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 244

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +          +G  +E  ++ +   E L  S   D   ++  +   G   
Sbjct: 8   ILLVDDDETLCALLSEFLQAEGFEVETLHTGDAATERLLQSDEFDTVVLDIMMP--GMSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +RA  QVP++ ++        +   + G DD + KP + RE+ AR+ AI RR +
Sbjct: 66  LDVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRRTE 125

Query: 121 VSNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            S             +   I + +  R   V     PL   E   L  LM   G+ ++K 
Sbjct: 126 NSLGNGLDTKPIVHTQLHGIELDTGTRTALVNNTPLPLTSAEFNALSLLMTRAGQTISKQ 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   +     EA +   ++ HIS++R+KL ++   D + S R +GY +
Sbjct: 186 DMTQEVLNRPLEAYD-RAMDVHISRIRQKLSSEGINDVIKSIRGVGYQM 233


>gi|238920016|ref|YP_002933531.1| DNA-binding transcriptional activator CusR [Edwardsiella ictaluri
           93-146]
 gi|238869585|gb|ACR69296.1| transcriptional activator protein CopR [Edwardsiella ictaluri
           93-146]
          Length = 227

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G   +  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEVKTGKYLCKGLTEAGFVADLTDNGLTGYHLAMTASYDLIILDILLPDV--NGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R  +Q +P++ +S   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIVRMLRNANQGMPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++     + +    R     G+   L  +E  +LE+ + ++G+ + ++ I S ++
Sbjct: 121 THIPESQLHVADLSLDLLSRKVTRSGKRITLTGKEFTLLEFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  + +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDLDFEPKLIQTVRGVGYLLE 222


>gi|237654631|ref|YP_002890945.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|237625878|gb|ACR02568.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
          Length = 226

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D     D       + G  ++          L  +   D+  ++  L    G  +
Sbjct: 3   ILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALNGDYDLIVLDVMLPSLDGWGI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R  R   + P++ ++    ++  +   + G DD + KP    E+LARV  + RR +
Sbjct: 63  LQTLR--RGGRETPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGR 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +  + +    R     G+   L  +E  +LE L+  +G+ + ++ I S ++ 
Sbjct: 121 NHEPETLRSANLELDLLRRRVNRCGQRIDLTAKEFALLELLLRRKGEVLPRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDSDTNVIEVAVRRLRVKVDDPFEPKLIHTVRGMGYVLE 221


>gi|121605861|ref|YP_983190.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594830|gb|ABM38269.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 230

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +    +     +G +++  N  E       S R ++  ++  +       +E
Sbjct: 5   LLVDDDNELTLMLVQYLSLEGFAVQATNDSETGVAQALSGRFEIVVLDVMMPR--LSGME 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
             R IRA SQ+P+I ++        +   + G DD V KP    E++AR+ AI RR    
Sbjct: 63  ALRRIRAGSQIPVIMLTARGDNIDRIVGLEMGADDYVPKPCTPGELVARLRAIMRRVRPF 122

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + + N  + G + ++   R     G    L   E  +LE L+   G+ V+K  +  
Sbjct: 123 VDDSQPAANHLKAGGLELWPGRRQAAWHGAPLELTGTEFSLLEVLVRQAGRLVSKQDLSK 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
            ++G      E   ++ HIS +R+KL  +    P +   R +GY +
Sbjct: 183 HVFGRPLAPFERR-IDVHISSIRQKLGQRPDGQPWILGVRGMGYQL 227


>gi|317490524|ref|ZP_07949002.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|316910375|gb|EFV32006.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 232

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 26/235 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   + D    L  + G +   F +       Q+    D+  ++  +   G    
Sbjct: 7   IAVCDDEQAIADLVGQLLVEAGFAPTVFYAAPDLLACQADDPFDLVILDIMMP--GMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------- 108
              R +R  S VP+I ++        +  F+ G DD V KP   RE+             
Sbjct: 65  ACCRELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRRATS 124

Query: 109 --LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
             +A         +      E   I +        + GE   L  +E  IL  LM ++G+
Sbjct: 125 NDVA--------SEDGPGMLECCGITLDESAYTATLHGEALSLTPKEFAILACLMRDQGR 176

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            VA   +F +++G    A   N V  HI  LRKKL       + V++   +GY +
Sbjct: 177 PVASRDLFESVWGEIANAQSNNTVMVHIRHLRKKLAAVDSSQEFVETVWGVGYKL 231


>gi|310829315|ref|YP_003961672.1| hypothetical protein ELI_3753 [Eubacterium limosum KIST612]
 gi|308741049|gb|ADO38709.1| hypothetical protein ELI_3753 [Eubacterium limosum KIST612]
          Length = 226

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++  G       +G       S E           ++  ++  L        
Sbjct: 4   ILVVEDDEMLGAGLCYNLELEGFKTTLVQSFEEAGKKIEEKSWEMVILDVNLPD--GDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR   + PLI ++        L  F+ G DD + KP + + ++ R+ A++RR +V
Sbjct: 62  SLAKKIRLKDRTPLIFLTACDLDDDILKGFELGADDYITKPFNIKIVIKRINAVFRRTEV 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S       G + +  + R      +   L   E ++L+    N GK + +  +  +++  
Sbjct: 122 SRKELFICGNLEIDFEKRTATKNEKPLVLTPTEFKLLQLFCKNPGKVLTRKMLLESLWDN 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
               V+E+ +  ++S+LR K+ +   F  + +   +GY  +W
Sbjct: 182 EGNFVDEHTLTINVSRLRSKISDDT-FAYIKTIYGMGY--EW 220


>gi|317152805|ref|YP_004120853.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316943056|gb|ADU62107.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 232

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D   A    +G  +    + E   +L +    DV  ++  L G+G   L
Sbjct: 3   LLLVEDEREIADFLKARLEGEGFDVVAAVTGEEGFFLANEQVFDVVLLDLTLPGRG--GL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R++R      P+I IS   S++  +   D+G DD + KP    E+LAR+  + RR  
Sbjct: 61  EVLRMLRRRGINAPVILISGSDSVEDKVAGLDAGADDYIVKPFAFPEVLARIRVVLRRGW 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R     G    L  RE  +LEYL+ + G+ V +  +   I+ 
Sbjct: 121 ADQVLLLRCGDLAMDLITRIVTRGGRTIALTAREFELLEYLLRHPGRVVTRDMLARDIWQ 180

Query: 180 LFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               A   +NV++ HI+++RKKL +      + ++R +G+ +
Sbjct: 181 EDTRATNLDNVIDVHIARIRKKLDHGHERKLLHTQRGVGFQL 222


>gi|148264601|ref|YP_001231307.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146398101|gb|ABQ26734.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   + +        +G   L   + +   E ++S+  + +          G ++
Sbjct: 4   ILVIEDEKDLAELIAFNLEKEGYRPLIALDGISGLEAVRSNPPDLILLDLMLPGLLGTEI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +L +     + +P+I ++        +  F+ G DD + KP   RE+L RV A+ RR  
Sbjct: 64  CKLLKKNEKTAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVLRRTM 123

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K +  R   G + + ++     V GE   L   E ++L  L    G+  ++  +   +
Sbjct: 124 PEKTAEKRITIGLVTIDTERHLVNVAGEEIILTTTEFKLLLNLAERLGRVQSRDILLQNV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G ++   +   V++H+++LR KL      + + + R  GY ++
Sbjct: 184 WG-YNYVGDSRTVDTHVTRLRTKLGEAG--EMIKTVRGFGYKME 224


>gi|269968140|ref|ZP_06182175.1| DNA-binding response regulator [Vibrio alginolyticus 40B]
 gi|269827271|gb|EEZ81570.1| DNA-binding response regulator [Vibrio alginolyticus 40B]
          Length = 219

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +      G   E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDDPRLGEQIMETLESTGWVPELSQDGIDALYRATSEEWDAIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|229095303|ref|ZP_04226295.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228688162|gb|EEL42048.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 242

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S E       +       ++  +        
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMP--KMDGW 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S +P+I ++        +     G DD V KP H  E+ AR+ A+ RR   
Sbjct: 79  ETCKKIRSFSNIPIIMVTARDQTVAVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN- 137

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   I          V  E   L   E  +L   + +    + + Q+   I+GL 
Sbjct: 138 EHKQIQYHGIVWDETKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           +   E+  V+SHI  LR KLR         + +   +GY 
Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236


>gi|110802452|ref|YP_698343.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682953|gb|ABG86323.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 229

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 105/227 (46%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +    +   +G  + + F+  E +  L+     D+  ++  L G   ++
Sbjct: 7   ILVVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFF-DFDMVLLDLMLPGITGEI 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                 IR     P+I IS   +++  ++    G DD ++KP    E+LARV A+ RR K
Sbjct: 66  F--IDEIRKIKNTPIIVISAKTTMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSK 123

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           ++N        +   + +    R+ +V+GE   L  +E +ILE L+ N  K   K  +F 
Sbjct: 124 ITNSSEGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++   +   ++N +  HIS LR K+       D + +   +G+ +D
Sbjct: 184 TVW-EEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKMD 229


>gi|29375010|ref|NP_814163.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227519052|ref|ZP_03949101.1| response regulator [Enterococcus faecalis TX0104]
 gi|227553742|ref|ZP_03983791.1| response regulator [Enterococcus faecalis HH22]
 gi|229547739|ref|ZP_04436464.1| response regulator [Enterococcus faecalis TX1322]
 gi|229548299|ref|ZP_04437024.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255970931|ref|ZP_05421517.1| two-component response regulator [Enterococcus faecalis T1]
 gi|256617297|ref|ZP_05474143.1| two-component response regulator [Enterococcus faecalis ATCC 4200]
 gi|256761300|ref|ZP_05501880.1| two-component response regulator [Enterococcus faecalis T3]
 gi|256852353|ref|ZP_05557729.1| response regulator [Enterococcus faecalis T8]
 gi|256959583|ref|ZP_05563754.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|257080788|ref|ZP_05575149.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|257083459|ref|ZP_05577820.1| two-component system response regulator [Enterococcus faecalis
           Fly1]
 gi|257088874|ref|ZP_05583235.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257415107|ref|ZP_05592101.1| two-component response regulator [Enterococcus faecalis AR01/DG]
 gi|257418153|ref|ZP_05595147.1| two component system response regulator [Enterococcus faecalis T11]
 gi|293384250|ref|ZP_06630138.1| DNA-binding response regulator SrrA [Enterococcus faecalis R712]
 gi|293387019|ref|ZP_06631587.1| DNA-binding response regulator SrrA [Enterococcus faecalis S613]
 gi|300861877|ref|ZP_07107957.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307275240|ref|ZP_07556386.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307288746|ref|ZP_07568724.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307292514|ref|ZP_07572363.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312900547|ref|ZP_07759847.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312904930|ref|ZP_07764069.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312906317|ref|ZP_07765328.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909663|ref|ZP_07768517.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312952008|ref|ZP_07770892.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29342469|gb|AAO80234.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44933142|gb|AAS49388.1| response regulator [Enterococcus faecalis]
 gi|227073499|gb|EEI11462.1| response regulator [Enterococcus faecalis TX0104]
 gi|227177124|gb|EEI58096.1| response regulator [Enterococcus faecalis HH22]
 gi|229306515|gb|EEN72511.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229307231|gb|EEN73218.1| response regulator [Enterococcus faecalis TX1322]
 gi|255961949|gb|EET94425.1| two-component response regulator [Enterococcus faecalis T1]
 gi|256596824|gb|EEU16000.1| two-component response regulator [Enterococcus faecalis ATCC 4200]
 gi|256682551|gb|EEU22246.1| two-component response regulator [Enterococcus faecalis T3]
 gi|256712207|gb|EEU27239.1| response regulator [Enterococcus faecalis T8]
 gi|256950079|gb|EEU66711.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|256988818|gb|EEU76120.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|256991489|gb|EEU78791.1| two-component system response regulator [Enterococcus faecalis
           Fly1]
 gi|256997686|gb|EEU84206.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257156935|gb|EEU86895.1| two-component response regulator [Enterococcus faecalis ARO1/DG]
 gi|257159981|gb|EEU89941.1| two component system response regulator [Enterococcus faecalis T11]
 gi|291078398|gb|EFE15762.1| DNA-binding response regulator SrrA [Enterococcus faecalis R712]
 gi|291083561|gb|EFE20524.1| DNA-binding response regulator SrrA [Enterococcus faecalis S613]
 gi|295114236|emb|CBL32873.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300848402|gb|EFK76159.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306496436|gb|EFM66004.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306500215|gb|EFM69554.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306508108|gb|EFM77232.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|310627692|gb|EFQ10975.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310630008|gb|EFQ13291.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310631814|gb|EFQ15097.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311290065|gb|EFQ68621.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311292372|gb|EFQ70928.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315028498|gb|EFT40430.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315144040|gb|EFT88056.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315146803|gb|EFT90819.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315153816|gb|EFT97832.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315167757|gb|EFU11774.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315172811|gb|EFU16828.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315574822|gb|EFU87013.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315576415|gb|EFU88606.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315582269|gb|EFU94460.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323479529|gb|ADX78968.1| response regulator [Enterococcus faecalis 62]
 gi|327534112|gb|AEA92946.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 230

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D        + +++   +  +       +   D+  ++  L        E
Sbjct: 6   LIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPT--MDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR   Q P++ +S        +     G DD + KP    E++AR  A   R +  
Sbjct: 64  ICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   I V +      V         +E ++L +LM +  +   K ++F +
Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           ++G      E + V  HI ++R+KL+   L   P+++    GY  +
Sbjct: 184 VWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFN 229


>gi|319898247|ref|YP_004158340.1| transcriptional regulator BatR [Bartonella clarridgeiae 73]
 gi|319402211|emb|CBI75742.1| transcriptional regulator BatR [Bartonella clarridgeiae 73]
          Length = 240

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD + +          +G  +E +          +     ++  +  +       +
Sbjct: 11  IVLVDDDSNILTSLSFALETEGYRVESYTDGSAALKNLTVNPPHLAIFDIKMPR--MDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 69  ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRSNA 128

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N    T          G + +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLPTGATPASSLRRGDLVMDQERHICTWKNKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A+Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAVYN-DQIYVDDRTIDSHIKRLRKKFKQVDNDFAMIETLYGVGYRF 237


>gi|256397386|ref|YP_003118950.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256363612|gb|ACU77109.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 266

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 89/226 (39%), Gaps = 17/226 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           A V +   A     G  +             +    D+  ++  L   G    E+ + +R
Sbjct: 38  ATVAEVVAAYLARAGYRVRRAADGPAAVAAAAERLPDLMVLDLMLP--GFDGYEVHQRVR 95

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-------- 120
           A  +VP+I ++        +     G DD V KP   RE++ R  ++ RR +        
Sbjct: 96  ALGEVPVIMLTARGEEGDRILGLQVGADDYVTKPFSPRELVLRAGSVLRRARGHGRGRGG 155

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +      G + V        + GE   L  RE  +L +LMAN G+  ++ ++   
Sbjct: 156 AEPPQTPEILALGRLEVDLTAHQARLGGEPLALTGREFDLLAFLMANPGQAFSRAELMQQ 215

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G      +++ V  H+ +LR+K+  +      + +   +GY ++
Sbjct: 216 VWGW--SFGDQSTVTVHVRRLREKIEPDPAAPSLIVTVWGVGYRLE 259


>gi|259908742|ref|YP_002649098.1| DNA-binding transcriptional regulator PhoP [Erwinia pyrifoliae
           Ep1/96]
 gi|224964364|emb|CAX55873.1| Two-component response regulator of virulence determinants [Erwinia
           pyrifoliae Ep1/96]
 gi|283478715|emb|CAY74631.1| Response regulator phoP [Erwinia pyrifoliae DSM 12163]
 gi|310767361|gb|ADP12311.1| DNA-binding transcriptional regulator PhoP [Erwinia sp. Ejp617]
          Length = 222

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L++        + G  ++     +  ++  +    D++ ++  L    E  + 
Sbjct: 4   LIVEDNPLLRHHLAVQLREMGHQVDAAEDAKEADYFLNEHTPDITLVDLGLPD--EDGMT 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R    + P++ ++     Q  ++  ++G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRTQEVRQPILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMRRNCG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +      L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIITLQPFQVDLSRRELTINDRQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAEHAQEVITTVRGQGYRFD 221


>gi|220929662|ref|YP_002506571.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999990|gb|ACL76591.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 231

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 91/225 (40%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++      F      +    + E           DV  ++  L   G    +
Sbjct: 6   LIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLP--GISGFQ 63

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R     V +I ++        +   + G DD V KP +  E++ R  ++ RRL  
Sbjct: 64  VCETLRKEMPDVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRRLGG 123

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +      +  ++G  ++    +    + +   L  +E  +L+  + N+ K   + ++  
Sbjct: 124 KSAGDSKEDTLKSGVFKLELYSQRVFKEDKEILLTPKEFFLLKIFLENKNKAFTRDELLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
            I+G +D   +  +V+ +I +LR K+ +K      +++   +GY 
Sbjct: 184 KIWG-YDYVGDTKIVDVNIRRLRSKIEDKDSHGMYIETVWGIGYR 227


>gi|255525277|ref|ZP_05392218.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187784|ref|ZP_06856178.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255511042|gb|EET87341.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047741|gb|EFG87181.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            ++ DD   +++    L   +G ++    ++  E+ +    +  D+  ++  +  K    
Sbjct: 4   ILIADDNEEIREIVRVLLESEGYNV--MEAVNGEDAVIKVDKNIDLIILDIMMPIK--SG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +    IR  +  P++ ++           F SG DD ++KP  + E+++RV A+ RR  
Sbjct: 60  FKACVEIREKTSAPILFLTAKTQDSDKCMGFSSGCDDYLSKPFSYTELVSRVKALLRRYY 119

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V        SN       + +     +  +  +   L   E RIL  +  NR K  +   
Sbjct: 120 VYKGKEKVNSNEDINIDGLTINISSNEVFIDNKEIILTETEYRILLLMAQNRKKVFSAQN 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++ +++         N +  HI  LR+KL R       + +    GY I+
Sbjct: 180 LYESVWKEPYFYSCNNTIMVHIRNLRRKLEREPQNPKYIKTVWGKGYRIE 229


>gi|160889014|ref|ZP_02070017.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492]
 gi|317479297|ref|ZP_07938432.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
 gi|156861481|gb|EDO54912.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492]
 gi|316904585|gb|EFV26404.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
          Length = 229

 Score =  214 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 105/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + +       ++G  ++  NS E E         ++  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAE-EALRMDIGSYNLLLLDVMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + +  +  +Q+P+I I+   +   T+  F+ G DD ++KP   RE+ ARV A+ RR +
Sbjct: 65  ASMLKKDKKTAQIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRRTQ 124

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  +     + +    +   + GE  PL ++E  IL  L+ N+G+  ++  I +
Sbjct: 125 QGETEHAPEQIVYKTLVLNVIKKKVCIDGEEAPLTKKEFEILLLLLQNKGRVFSREDILN 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 185 RIW-SDEVYVLDRTIDVNITRLRKKIGVYG--KCIVTRLGYGYCFE 227


>gi|326800747|ref|YP_004318566.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326551511|gb|ADZ79896.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 226

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + +         + G            + L      D+  ++  L       +
Sbjct: 3   ILIIEDESRIAQLLQRGLEELGYKTTVAYDGILGKKLVWQQAYDLIIMDIILP--KINGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R I+  +  +P+I ++   +    L+ FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 61  DLCREIKESYPDLPIIMLTALGTTDDKLEGFDAGADDYLVKPFDFRELEARIRVLLKRGS 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            SN+      + G + +    R  +       L  +E ++LEY++ N+G+ + + +I   
Sbjct: 121 ASNSASTAILKAGELEMNLHTRIVKRGNVEINLTPKEFKLLEYMIRNKGRVLPRVEIAEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           ++         N ++ +I+ LR K+        + +K  +G
Sbjct: 181 VWDTT-FDTGTNFIDVYINYLRNKIDKAFEEKYIHTKPGMG 220


>gi|326204574|ref|ZP_08194431.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985367|gb|EGD46206.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ DG        G  +   +   + E L          I   +       L
Sbjct: 4   ILIVEDDKLINDGISIALKKGGHMV--LSGFSYNEALCLFLNNSFELILLDINLPDRSGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR  S +P+I I+   + Q  ++ F  G DD + KP     +  R+ A+ RR   
Sbjct: 62  ELCNEIRKKSDIPIIFITANDTEQDIVNGFVIGCDDYIAKPFSLEVMNRRIHAVLRRTTP 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N   +G I +  D      +  +  L   E ++L  L  N G+ + +  I   ++  
Sbjct: 122 EDKNTFRSGEISINYDKMVVSKREVLIKLTATEYKLLALLTQNSGQVLTRDIILQRLWDT 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
            +  V+EN V  ++ +LR+K+ +       + +   +GY
Sbjct: 182 DEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGIGY 220


>gi|223936068|ref|ZP_03627982.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895290|gb|EEF61737.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 88/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +G  +      E       + + D+  ++  +        
Sbjct: 4   ILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMP--KLDGF 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R  +  VP++ ++    ++  +   D+G DD + KP    E+LARV A+ RR +
Sbjct: 62  ALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQ 121

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +    +      +      +E  +L  L    G+ +++ +    +
Sbjct: 122 REKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +G +        V++HI+ LR K+ +       + +   +GY ++
Sbjct: 182 WG-YAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLE 225


>gi|170768311|ref|ZP_02902764.1| DNA-binding response regulator PhoP [Escherichia albertii TW07627]
 gi|170123077|gb|EDS92008.1| DNA-binding response regulator PhoP [Escherichia albertii TW07627]
          Length = 223

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R++   +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHEVITTVRGQGYLFE 221


>gi|28210164|ref|NP_781108.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium tetani E88]
 gi|28202600|gb|AAO35045.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium tetani E88]
          Length = 228

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       ++G  ++   S +    +    R ++  ++  L    E   
Sbjct: 5   IIVIEDEFSINDILTFALKEEGYRVKSTFSSQEARKIMKEFRPNLVLLDINLPD--ESGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I    ++P++ I+    L   +   + G DD + KP H +E++ RV    RR+K 
Sbjct: 63  ELCKFITCKYKIPILMITARNDLVDKVLGLELGADDYITKPFHIKEVMTRVRVALRRVKK 122

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +   E          +++  + R+         L  +E  +L +L  NR    ++  I 
Sbjct: 123 YSVVKENKEFIELNDEVKINLESREVFKNNREIKLKPKEYDLLVFLAQNRNIVFSRETIL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++ L +   E   V+ H+ +LR KL +  G   +++   +GY +
Sbjct: 183 DRVWEL-EYDGEIRTVDIHVRRLRAKLDSNNGQSIIETVFGVGYVM 227


>gi|238917580|ref|YP_002931097.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238872940|gb|ACR72650.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 220

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++  +   G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSN-PLKLNMEELHRYDLILLDIMMP--GMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   +  +  P  + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    ++ + +HI  +R K  +   + P+ +   +GY  +
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYMPIKTVWGIGYKWE 219


>gi|153005959|ref|YP_001380284.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152029532|gb|ABS27300.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 233

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD A V+    A  G  G  L    +L   E L +S   DV  ++  L       
Sbjct: 7   LVLVVDDEAQVRRFLRAALGSRGFRLVEAETLREAEQLATSHNPDVYLLDLTLPD--GDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L R +R  ++ P+I +S     +  ++  D+G DD + KP    E+LAR+    R  +
Sbjct: 65  VDLARRLREWTRAPIIVLSARGREEDKVNALDAGADDYLTKPFGVNELLARLRVALRHAQ 124

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S  +    E GP+R+    R+  V+G    L   E R+L  L  + G  +   QI   +
Sbjct: 125 ASPAQPAVLEAGPLRIDLARREVTVEGREVRLTPTEYRLLALLARHAGMVLTHRQILREV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G    A E + V  H+++LRKK+         + ++  +GY +
Sbjct: 185 WGPN--ATEAHYVRVHMAELRKKIEADPARPRLLVTEPGVGYRL 226


>gi|71733992|ref|YP_273462.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257487334|ref|ZP_05641375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289647322|ref|ZP_06478665.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298485866|ref|ZP_07003942.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71554545|gb|AAZ33756.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298159555|gb|EFI00600.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320329839|gb|EFW85827.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330867883|gb|EGH02592.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330874409|gb|EGH08558.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330890476|gb|EGH23137.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. mori str. 301020]
 gi|331009063|gb|EGH89119.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 225

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVMLP--GLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|126695491|ref|YP_001090377.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542534|gb|ABO16776.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 248

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 93/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A ++          G  +      +    L      D+  ++  +        
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTARDGKEALKLFKDYEPDLVVLDVMMP--KLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R  S VP++ ++    +   +   + G DD V KP   +E+ AR+  + RR+  
Sbjct: 69  GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++       I++ ++ R      E   L   E  +LE L++  G+  ++ +I 
Sbjct: 129 EQIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188

Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             ++G   +  V+  VV+ HIS+LR KL  +    + + + R  GY
Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGY 234


>gi|320156641|ref|YP_004189020.1| two-component system response regulator QseB [Vibrio vulnificus
           MO6-24/O]
 gi|319931953|gb|ADV86817.1| two-component system response regulator QseB [Vibrio vulnificus
           MO6-24/O]
          Length = 219

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  I      G   E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDDPRLGEQIIESLEKTGWVPELSQDGIDALYRATSEEWDAIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y + N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFVHNADKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  I ++RKK+      + + + R LGY ++ N
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKI----APNIIKTVRGLGYQLNAN 219


>gi|295402179|ref|ZP_06812137.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111459|ref|YP_003989775.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975770|gb|EFG51390.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216560|gb|ADP75164.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 222

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +    + +   +  +++     +   +       D+  ++  +  K  +  
Sbjct: 3   ILLAEDDTRLGKLIVYMLKKEKHTVDWVQDGDDAYYFAKHTHYDLLILDWMMPSK--EGT 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R       ++ ++   +++  +   D G DD V KP    E+ AR+ A+ RR+ 
Sbjct: 61  EVCKALRKDGFNGAILMLTAKDAVEDRVAGLDCGADDYVVKPFEFSELFARIRALSRRIA 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +  +    +   +   L  RE +++E  M +  + + +  I   I+
Sbjct: 121 QPFQAEELSFGNLSLNLNEYSIKKGNKKIQLTNREFQLMELFMRHPNQILPRELIIERIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GL D  +  N ++S I  LRKKL +      + + R +GY +
Sbjct: 181 GL-DADISSNNIDSFIRLLRKKLGDDG--TLIQNIRGVGYKL 219


>gi|254520861|ref|ZP_05132917.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226914610|gb|EEH99811.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 232

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G ++    + +  + L+ +  ED+  I   L+       
Sbjct: 6   ILVVDDDKEITEAIEIYLINEGYNV--LVAYDGVQALKIAREEDIHLIIMDLMMPNLDGT 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                +R   ++P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 64  RATIELRREKEIPIIMLSAKSEDSDKILGLNLGADDYLTKPFNPLELIARVNSQIRRYTR 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +      G + +    ++  V G+   L   E +IL  LM+N G+  +  +I
Sbjct: 124 FSSMTNDKNKEVIAVGGLELNRLNKEVNVNGKEAKLTPLEFKILSLLMSNLGRVFSIEEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++      V+   V  HI ++R+K+  +      +     +GY +D
Sbjct: 184 YERVWNEAPYNVD--TVTVHIRRIREKIEIDPRNPQYLKVVWGVGYKVD 230


>gi|224540237|ref|ZP_03680776.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518116|gb|EEF87221.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 229

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  ++  NS E    +   +   +          G K+ 
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMNIGSYNLLLLDVMMGEISGFKMA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L +  +  +QVP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR + 
Sbjct: 66  SLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTQQ 125

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +  +     + +    +   + GE  PL ++E  IL  L+ ++G+  ++  I + 
Sbjct: 126 GEPERAPEQISYKTLVIDIVKKKVSIDGEEAPLTKKEFEILLLLLQSKGRVFSREDILAR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+   +  V +  ++ +I++LRKK+   +    + ++   GY  +
Sbjct: 186 IW-SDEVYVLDRTIDVNITRLRKKIG--IYGKCIVTRLGYGYCFE 227


>gi|170692767|ref|ZP_02883929.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
 gi|170142423|gb|EDT10589.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
          Length = 234

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D   +   + G  ++     E   +L +    DV  ++  L  +     
Sbjct: 3   LLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGTYLATEFDYDVIVLDVMLPKR--DGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R     P+I ++    +   +     G DD + KP    E++ R+ A+ RR + 
Sbjct: 61  SVLKALRMRKSTPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTRS 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + V   GR     G    L  +E ++L  L   +G  ++KT I   ++ +
Sbjct: 121 QESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 -NFDSHTNVVETAIKRLRAKLDGPFPSKLLHTVRGMGYVLEV 221


>gi|163847093|ref|YP_001635137.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|163668382|gb|ABY34748.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
          Length = 245

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALF-GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   +              +    N LE  E  +     D+  ++  +       
Sbjct: 21  ILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERET-YDLIFLDVMMPFV--DG 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +    IRA S VP++ I+        +  F  G D+ + KP    E +ARV AI RR+ 
Sbjct: 78  FDACERIRAKSDVPIVIITAREGTDDIVQDFRRGADEYITKPFKVAEFVARVEAILRRVD 137

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +   R      + G + + +      V+G+   L   E  +L +L AN G+   +  +F 
Sbjct: 138 MQKARTAPTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFR 197

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G ++   E N+V+  + +LR+K+         + + R +GY ++
Sbjct: 198 EVWG-YEYVGETNLVDVCVRRLREKVEVEPSKPKIITTVRGVGYKLE 243


>gi|94314717|ref|YP_587926.1| winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93358569|gb|ABF12657.1| two component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 242

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 106/227 (46%), Gaps = 16/227 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-------GFNSLEFEEWLQSSAREDVSAIEAFLIG 55
           +L++D A++ +        +G +++       G ++   +   ++    DV  ++  L  
Sbjct: 4   LLVEDDAMIGESVKVALRQEGFTVDWVRDGDAGLDAASDQHGPRADGGYDVVLLDLGLPR 63

Query: 56  KGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
           +    L++ + +RA + + P++ ++   ++   +   ++G DD + KP   +E+ AR+ A
Sbjct: 64  RP--GLDVLKTLRARNVRTPVLILTARDAVADRVAGLNAGADDYLIKPFDLQELAARMHA 121

Query: 115 IYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR +  +      G I +    R+    G    L  RE  +L  LMA  GK  +  Q+
Sbjct: 122 LVRRAEGRAEPVLRYGDIMLNPATREATQAGASVRLSAREFALLSALMARPGKVWSVPQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +YG +D+ V  N VE +I  LR+K     G   + + R +GY I
Sbjct: 182 QERLYG-WDDEVGSNTVEVYIHALRRK----FGAALIRNIRGVGYVI 223


>gi|261820326|ref|YP_003258432.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|261604339|gb|ACX86825.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 226

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G        L  +E +  +   D +A+   ++      +
Sbjct: 3   ILLVDDDVELGDMLCEYLNAEGFLTS--RVLTGKEGIDGAMSGDYTAMILDVMLPDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR   Q+P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 61  DVLRQIRKTEQLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYDE 120

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K   + A +G + +    R    +G+ F L   E  +LE L+    + V+K ++  
Sbjct: 121 QPSTKRDASVAASGELVLHPATRISAWRGKPFDLTASEFNLLELLLRFPERVVSKDELSE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 KCLGRRREAYD-RSVDVHISNIRQKLGALPGNTMTIETVRSVGYRI 225


>gi|288573461|ref|ZP_06391818.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569202|gb|EFC90759.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 240

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + + D         G  +   ++ +  + L          +   L+  G    
Sbjct: 8   ILLVEDESSIVDVVSQALKRHGFDVMTADNGD--DALDMLYPVLPDLVLLDLMLPGMDGW 65

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IR+  +   +P+I ++     +  +   + G DD + KP    E++ARV ++ RR
Sbjct: 66  EVCRRIRSSPESRALPIIMMTARRDERDLVQGLELGADDYIRKPFSLVELMARVKSLIRR 125

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +   +      G + +  +G+  + +GE   L   E R+L  L    G+ V + ++ S 
Sbjct: 126 TQLVQTKPTVSVGDLEIDLEGQIAKFKGEEINLSLTEYRLLRTLAERPGQVVPRERLLSL 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220
           I+G++    +   V+ HIS+LRKKL    G     + + R  GY I
Sbjct: 186 IWGVY--GGDTRTVDVHISRLRKKLAQAGGDSAPTITALRGRGYRI 229


>gi|224371593|ref|YP_002605757.1| response regulator, CheY-like receiver domain protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223694310|gb|ACN17593.1| response regulator, CheY-like receiver domain protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 247

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 90/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   +       +  S       ++  +        
Sbjct: 13  ILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMP--KMDGF 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S +P++ ++        +   + G DD + K    RE+LAR+ A+ RR ++
Sbjct: 71  EMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRL 130

Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           S          +N    G + +    R   + G+   L   E  +L  L     + +++ 
Sbjct: 131 SMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRD 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           Q+  A+ G     V +  V+ HIS LR+KL  +      + + R +GY  +
Sbjct: 191 QLLDAVAGRS-YDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFN 240


>gi|91791478|ref|YP_561129.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91713480|gb|ABE53406.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 225

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A  +   +  F    ++ +  +  +    L      D+  ++  L       L
Sbjct: 3   ILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLP--KLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R+     P++ +S    +   +    +G DD + KP    E+L RV  + +R +
Sbjct: 61  TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                AE   G +R+    R   +      L  +E ++L+YLM +  K +++T +F A++
Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRL 221


>gi|38347978|ref|NP_941227.1| two-component-system response regulator involved in copper
           resistance [Serratia marcescens]
 gi|152973495|ref|YP_001338546.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|156936353|ref|YP_001440269.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894]
 gi|157412136|ref|YP_001481477.1| PcoR [Escherichia coli APEC O1]
 gi|168998674|ref|YP_001687942.1| PcoR [Klebsiella pneumoniae NTUH-K2044]
 gi|170021402|ref|YP_001726356.1| two component heavy metal response transcriptional regulator
           [Escherichia coli ATCC 8739]
 gi|170767051|ref|ZP_02901504.1| transcriptional activator protein IrlR [Escherichia albertii
           TW07627]
 gi|238910409|ref|ZP_04654246.1| transcriptional regulatory protein PcoR [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|295697854|ref|YP_003602511.1| two component heavy metal response transcriptional regulator
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|296105206|ref|YP_003615352.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|300916232|ref|ZP_07132982.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|329999923|ref|ZP_08303582.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
 gi|13632798|sp|Q47456|PCOR_ECOLX RecName: Full=Transcriptional regulatory protein pcoR
 gi|619132|emb|CAA58529.1| pcoR [Escherichia coli]
 gi|38259455|emb|CAE51683.1| probable two-component-system response regulator involved in copper
           resistance [Serratia marcescens]
 gi|99867161|gb|ABF67806.1| PcoR [Escherichia coli APEC O1]
 gi|150958287|gb|ABR80316.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|156534607|gb|ABU79433.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894]
 gi|169756330|gb|ACA79029.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
 gi|170124489|gb|EDS93420.1| transcriptional activator protein IrlR [Escherichia albertii
           TW07627]
 gi|295059665|gb|ADF64403.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059966|gb|ADF64703.1| two component heavy metal response transcriptional regulator
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|300416468|gb|EFJ99778.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|309700444|emb|CBI99735.1| putative transcriptional regulatory protein PcoR [Escherichia coli
           ETEC H10407]
 gi|322614044|gb|EFY10980.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617936|gb|EFY14829.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625450|gb|EFY22276.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629915|gb|EFY26688.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632196|gb|EFY28947.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636453|gb|EFY33160.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322644691|gb|EFY41227.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651287|gb|EFY47671.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652800|gb|EFY49139.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659102|gb|EFY55354.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663196|gb|EFY59400.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668683|gb|EFY64836.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674513|gb|EFY70606.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678281|gb|EFY74342.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682462|gb|EFY78483.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684175|gb|EFY80181.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192269|gb|EFZ77501.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196304|gb|EFZ81456.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201894|gb|EFZ86957.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206437|gb|EFZ91398.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212030|gb|EFZ96857.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216935|gb|EGA01658.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220302|gb|EGA04756.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224349|gb|EGA08638.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228277|gb|EGA12408.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233455|gb|EGA17548.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237083|gb|EGA21150.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243702|gb|EGA27718.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246055|gb|EGA30042.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250832|gb|EGA34710.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257672|gb|EGA41358.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261881|gb|EGA45448.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267727|gb|EGA51209.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268607|gb|EGA52074.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|323974974|gb|EGB70084.1| heavy metal response regulator [Escherichia coli TW10509]
 gi|328538134|gb|EGF64293.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
          Length = 226

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D             ++G   + FN+        S  + D+  ++  L    G ++
Sbjct: 4   ILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   +  + P++ ++   +++  +   + G DD + KP    E++ARV  + RR +
Sbjct: 64  ISALRE--SGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 121

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + V    R     G+   L  +E  +LE L+   G+ + ++ I S ++ 
Sbjct: 122 SQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV++  + +LR K+ +      + + R  GY ++
Sbjct: 182 M-NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLE 222


>gi|325831421|ref|ZP_08164675.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|325486675|gb|EGC89123.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 232

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 26/235 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   + D    L  + G +   F +       Q+    D+  ++  +   G    
Sbjct: 7   IAVCDDEQAIADLVGQLLVEAGFAPTVFYAAPDLLACQADDPFDLVILDIMMP--GMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------- 108
              R +R  S VP+I ++        +  F+ G DD V KP   RE+             
Sbjct: 65  ACCRELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRRAIS 124

Query: 109 --LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
             +AR        +      E   I +        + GE   L  +E  IL  LM ++G+
Sbjct: 125 NDVAR--------EDGPGMLECCGIALDESAYTATLHGEALSLTPKEFAILACLMRDQGR 176

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            VA   +F +++G    A   N V  HI  LRKKL       + V++   +GY +
Sbjct: 177 PVASRDLFESVWGEIANAQSNNTVMVHIRHLRKKLAAVDSSQEFVETVWGVGYKL 231


>gi|312862894|ref|ZP_07723134.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           vestibularis F0396]
 gi|311101754|gb|EFQ59957.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           vestibularis F0396]
          Length = 219

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 101/219 (46%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD+  +    +         + GF S+  +    S  R D+  ++  +       L
Sbjct: 4   ILVIDDQEDIVKLVVKALELQNHKVTGFTSV-LDLDKNSLPRFDLILLDIMMPDV--DGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +    IR     P++ I+        +     G DD + KP   +E+ ARVAA  RR  +
Sbjct: 61  QFCHEIRNQVDCPILFITAKTQEADIVQGLTYGADDYICKPFGVKELQARVAAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +++   G  +     ++  V+ ++  L + E  I ++L  N+G+  +K QI++ +YG 
Sbjct: 121 ERHHKLSLGDFQFDLSAQELYVENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++      V  HI  +R KL++ +G +P+++   +GY 
Sbjct: 180 YEDKGSPTAVAEHIKNIRAKLKD-VGQNPIETVWGIGYK 217


>gi|94971588|ref|YP_593636.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553638|gb|ABF43562.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 247

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD A + +         G S++   +        +  + D+  ++  L   G    
Sbjct: 22  LLLIDDDAELCEMMSEFLVQHGHSVDCIRNGPDGLKSAAETKYDLVILDVMLP--GMNGF 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R  + VP+I ++   +    +   ++G DD + KP    E+LARV A+ RR   
Sbjct: 80  TLLSQLRRRTPVPVIMLTARTAPHDRIQGLEAGADDYLPKPFDPDELLARVRAVLRRASQ 139

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   A        +R+ +  R   ++ ++  L   E  IL  L+ + G+ + + +I  AI
Sbjct: 140 APADALFDFTFDDVRINARTRQVWLKADLIDLTAVEFDILYLLVCSAGRVLTREEISLAI 199

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 + +   ++ HIS +R KL     F  + + R +GY  
Sbjct: 200 LERRLMSHD-RSLDVHISHIRSKLETLAPF--IQTVRGVGYVF 239


>gi|310826289|ref|YP_003958646.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612]
 gi|308738023|gb|ADO35683.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612]
          Length = 231

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D       ++G   + F +   +E L+  +   +  I   ++      +
Sbjct: 3   ILICDDEREIVDALELYLKNEGY--DIFKAYSGKEALEIVSENTIHLILMDIMMPEMDGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  + +P+I +S        +     G DD + KP +  E++ARV +  RR   
Sbjct: 61  HATLKIRETANIPIIFLSAKAEDNDKIMGLTVGGDDYITKPFNPLEVIARVKSQLRRYTT 120

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  +TG + +    +   V GE   L   E +IL++LM   GK  +  QI+ 
Sbjct: 121 LGSYVKRTDVYKTGGLELDDAYKKVTVDGEEVKLTPVEYKILKFLMREMGKVFSIEQIYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++       + N V  H+ ++R+K+  N      +     +GY ++
Sbjct: 181 NVWEEPSYNAD-NTVAVHVRRIREKIEINPKEPKYLKVVWGIGYKVE 226


>gi|262392993|ref|YP_003284847.1| copper-sensing two-component system response regulator CpxR [Vibrio
           sp. Ex25]
 gi|262336587|gb|ACY50382.1| copper-sensing two-component system response regulator CpxR [Vibrio
           sp. Ex25]
          Length = 229

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      ++  + +  I   ++      +
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAG---LAAVNDKIDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R + + P++ ++        +   + G DD + KP   RE+LAR+ AI RR   
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSS 120

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          E   +R++   ++     ++  L   E  +L + + N G+ + K  +  
Sbjct: 121 TQKNTKNSDCIEYQELRLYPGKQEAYCDQQLLDLTATEFALLTHFVQNPGQVLTKETLSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|296135166|ref|YP_003642408.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295795288|gb|ADG30078.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 258

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +     +G +++        +    + + D+  ++  L       +
Sbjct: 3   LLLVEDDVMIGESVLDALRGEGYAVDWVRDGAVADSALRTEQYDLVLLDLGLP--KMDGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + +R   +  P++  +   ++   +   D+G DD V KP    E+ AR+ A+ RR  
Sbjct: 61  AVLKALRTRRETTPVLIATARDAVSARIAGLDAGADDYVLKPYDLDELSARIRALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G I +     +  + GE   L +RE  +LE L+A  G  +++ Q+   +Y 
Sbjct: 121 GRAEPVFSYGRISLNPATHEALLDGEPVALSQREWAVLEALIARPGMILSRAQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE +  N VE ++  LRKKL    G D + + R +GY I
Sbjct: 181 WKDE-ISSNAVEVYVHSLRKKL----GPDLIRNIRGMGYMI 216


>gi|224026196|ref|ZP_03644562.1| hypothetical protein BACCOPRO_02952 [Bacteroides coprophilus DSM
           18228]
 gi|224019432|gb|EEF77430.1| hypothetical protein BACCOPRO_02952 [Bacteroides coprophilus DSM
           18228]
          Length = 228

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 102/226 (45%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + +        +G  ++  NS E    L      ++  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLEMEGYQVDTANSAEEALKL-DLPSYNLLLLDVMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             + +  +  + +P+I I+   +   T+  F+ G DD ++KP   RE++ RV A+ RR  
Sbjct: 65  ASMMKKNKDTAGIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRRTA 124

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   + +   + +    +   + GE   L ++E  IL  L+ N+G+  ++  I + 
Sbjct: 125 NVQTREQEQLQYRDLVIDIPKKKVTISGEEISLTKKEFEILLLLLQNQGRVFSREDILAK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++   +  V +  ++ +I++LRKK+ N      + ++   GY  + 
Sbjct: 185 VW-HDEVYVLDRTIDVNITRLRKKIGNYG--KYIVTRLGYGYCFEC 227


>gi|171058578|ref|YP_001790927.1| osmolarity response regulator [Leptothrix cholodnii SP-6]
 gi|170776023|gb|ACB34162.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 244

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD A ++D        +G  +      +    + +    D+  ++  L   GE  L
Sbjct: 12  IVVVDDDARIRDLLRRYLTQEGFEVLLAEDSKALNRILTRETVDLIVLDLMLP--GEDGL 69

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +RA + + P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 70  SICRRLRAANDITPIIMLTAKVDDVDRIVGLEVGADDYLPKPFNPRELLARINAVLRRRP 129

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            GP       R     GEV  L   E  +L+ L+ +  + +++ 
Sbjct: 130 VMEAPGAPSREAQSVTFGPFEFDLALRRLTRDGEVISLTTGEFSMLKALVRHPRQPLSRD 189

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 190 KLAQLARGR-EFEPFDRSLDVQVSRLRKMIEPDPSQPRYIQTVWGVGYVF 238


>gi|158319154|ref|YP_001511661.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139353|gb|ABW17665.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++         DG  +    S E    + +  +  V  ++  L   G    E
Sbjct: 8   LVVEDETSIRKFLAINLNRDGFEVIEAASGEEALDIITRTQPKVVVLDLMLP--GIDGFE 65

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + IR     + +I ++        +   + G DD + KP +  E++AR+ A  R++  
Sbjct: 66  VCQNIRKSIPNIVIIMLTAKSQDMDKIMGLELGADDYMVKPFNPLELIARIRANLRKIDN 125

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    N         +  D +    +G    L   E  +++  M    K  ++ +I + +
Sbjct: 126 AKGQLNKIISLREFELDLDAQKFYKRGIEIELTPIEFSMMKMFMEGNNKAFSRDEILNIV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G  +   +   V+ H+ ++R+K+ +       +++   +GY +
Sbjct: 186 WGK-NYFGDMKTVDVHVRRIREKIEDDPSNPRIIETVWGVGYRL 228


>gi|145221487|ref|YP_001132165.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145213973|gb|ABP43377.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 251

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +       ++      +      DV  ++  L   G   LE
Sbjct: 21  LVVDDELPLAEVVASYLEREQFEAVVADNGVDAIAVARDLDPDVVILDIGLP--GIDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD + KP   RE++AR+ A+ RR +V 
Sbjct: 79  VCRQLRTFSDAYVVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRVL 138

Query: 123 NNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +               G + +    R+  +  E   L R E  ILE L    G  +++ 
Sbjct: 139 QSATATAGIDVAPPRRFGALSIDVAAREVRIDDEQILLTRTEFDILEALSGRPGNVLSRR 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  LR+KL  +      + + R +GY +
Sbjct: 199 QLLEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGYRM 247


>gi|257455860|ref|ZP_05621080.1| transcriptional activator protein CopR [Enhydrobacter aerosaccus
           SK60]
 gi|257446745|gb|EEV21768.1| transcriptional activator protein CopR [Enhydrobacter aerosaccus
           SK60]
          Length = 244

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       + G  ++  + +   +   +   ED S +   ++       E
Sbjct: 4   LLVEDEKNLGEYIKKGLTEAGFIVD--HHMTGLDGYHALMTEDFSVVVMDVMLPDVSGFE 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L +  RA     P++ ++    L   +   + G DD + KP    E++ R+ ++ RR   
Sbjct: 62  LIQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRANQ 121

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+   +      +++    R          L  +E  +L++ +  +G+ + +T I S ++
Sbjct: 122 SDYKSSVIHIADLKMDIAKRTVYRGNTNIKLTAKEFALLQFFLERQGEVLPRTVIASQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 182 DI-NFDSDTNVIDVAIRRLRIKIDDGFDTKLIHTVRGMGYRLE 223


>gi|189913071|ref|YP_001964960.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|189913405|ref|YP_001964634.1| Two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167777747|gb|ABZ96047.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167781473|gb|ABZ99770.1| Two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 241

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 92/233 (39%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +           +   F + E       S   D+  ++  L       +
Sbjct: 4   ILVIEDDPDIGNLIRKSLDSAHYTTSVFENGEDGLKFYKSNHPDLVILDLSLPD--IDGM 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR   +  P+  +S        +   + G DD + KP   RE+  RV   +RR  
Sbjct: 62  EICRSIRKSDESTPIFILSARTEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWD 121

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                            G +++ S  R   +   +  + R+E  IL+ L  + GK  ++ 
Sbjct: 122 KKIGIKPNVGQAGEIIRGALKIDSIRRRVTLNENIINISRKEFDILQLLAGSPGKVFSRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            I  +++G+ +    E +++SHI ++R KL       + +++   +GY    N
Sbjct: 182 MILESVWGV-EWDGFERMIDSHIKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233


>gi|154250109|ref|YP_001410934.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154045|gb|ABS61277.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 229

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 6/218 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++ +    L   DG   +  N +            +V  ++  L   G  + E
Sbjct: 4   LIVEDERIIAENLQKLLKSDGFESDVANGINDMYRKLEKNTYEVILLDLMLPD-GNAINE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +  +      + +I IS   +    +   + G DD V KP + RE++ARV A  RR K  
Sbjct: 63  IQTLKNEFPDIGIIVISAKSTDIDKILGIELGADDYVGKPFNPREVVARVKAYLRRTKGI 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + ++         G+   L  +E  IL+ L     +  ++ +I   I+   +
Sbjct: 123 KEVIRYGKLEIYPSDYVVLYDGQKIDLTAKEFEILKLLAQRPDRVYSREEILETIW-TDE 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V + VV+ HI+ LRKKL    G D + + R +GY  
Sbjct: 182 YDVFDRVVDVHINSLRKKL----GKDWIITVRGVGYKF 215


>gi|92114714|ref|YP_574642.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91797804|gb|ABE59943.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 233

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  LV  G  A     G +++   S+            D+  ++  L       L 
Sbjct: 4   LLVEDDELVAAGIRAGLESHGWAVDTVASMAAARHALQVVASDIVVLDRGLRD--GDGLT 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L    R A  +VP++ ++   ++   +   D+G DD + KP    E++AR+ A+ RR   
Sbjct: 62  LVEEWREAGKRVPVLVLTARDAISDRIAGLDAGADDYLVKPFDLDELVARLHALLRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++     G +R     R    +G    L RRE  +LE  + + G  ++  Q+  ++YGL
Sbjct: 122 RAHPCIVHGALRFDPQARQVTWRGRPVTLSRRELVLLETFLQSPGSVLSANQLRDSLYGL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE VE N +  HI  LR+K+        +++ R LGY +
Sbjct: 182 DDE-VESNALNVHIHHLRRKVAPA----VIETVRGLGYRL 216


>gi|260584875|ref|ZP_05852620.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
 gi|260157532|gb|EEW92603.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
          Length = 231

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 95/230 (41%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +       ++    ++ ++  +  E +Q+    D+  ++  +       
Sbjct: 3   ILVVDDDREIVELLSIYLRNEKFEIVKAYDGKQALEKIQAYPDIDMVILDIMMPR--LDG 60

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +   IR  +  +P++ +S   +    +    +G DD V KP +  E++ARV ++ RR 
Sbjct: 61  ISVVHEIRKTNDALPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRRT 120

Query: 120 KV------SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   S      GP+ +         + G    L   E  IL  L ++  K  +  +
Sbjct: 121 SALTKESESAEEITIGPLLINKGSHQVTTLDGLEIQLTVLEFGILFLLASHPNKVFSADE 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           IF  ++   +  V    V  H+S LR K+    G D  +++   +GY I+
Sbjct: 181 IFETVWQQ-ESIVSTKTVMVHVSHLRDKIAEATGGDKVIETVWGVGYKIE 229


>gi|221200480|ref|ZP_03573522.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221206160|ref|ZP_03579174.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221174172|gb|EEE06605.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221179821|gb|EEE12226.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 220

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G       +G +++     +       S    +  ++  L  +    L 
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRSTGYGLLLLDLGLPNR--DGLA 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +   +R   +  P I I+    ++  +   DSG DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VLASLRRRDETLPTIIITARDGVRDRIAGLDSGADDYLVKPFELEELLARIRAVNRRHAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      GP+R+        +  +  PL  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 122 RAQTTLAIGPLRLDPVKHRVWLHDDEVPLSPKEFVLLHELMREPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDMIRTVRGVGYRI 216


>gi|159899580|ref|YP_001545827.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892619|gb|ABX05699.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 227

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G        G S    +  +    +    + D+  ++  L        
Sbjct: 5   ILIVEDERKIAVGLQNYLEGVGYSTITASDGQAGLDMARREQPDLVLLDLMLPMV--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA S VP+I ++       +L   + G DD + KP   R+++AR+ A+ RR+  
Sbjct: 63  TVCRTLRAESSVPIIMLTARVEEVDSLAGLELGADDYITKPFSPRQVVARIKAVLRRVNG 122

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                       I +    R   ++      L   E  +L  L+ + G+ + ++Q+  A+
Sbjct: 123 ELEPPMIVRKSGIEIDLQRRTVVIEQNPITSLTPTEFDLLVTLVRSAGRPLTRSQLLDAV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            G   EA +   V++HI  +R+K+         + +   +GY  
Sbjct: 183 QGEEGEAYD-RTVDAHIKNVRRKIEPNPSVPRYILTVFGVGYKF 225


>gi|296116946|ref|ZP_06835548.1| two component response regulator PhoB [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976512|gb|EFG83288.1| two component response regulator PhoB [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 261

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 87/236 (36%), Gaps = 19/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G  +              S + D+  ++  L   G   +
Sbjct: 21  ILVAEDDEALSVLVTYNLEAAGYEVRAVADGLDALEQVGSWQPDLLVLDWMLP--GLSGV 78

Query: 62  ELPRIIRAH----SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +L R +RA       +P++ ++   +   ++   D+G DD + KP     + ARV A+ R
Sbjct: 79  DLCRRLRARGGAMCDMPVLMLTARTAESDSVHALDTGADDYLTKPCGMEALNARVRALLR 138

Query: 118 RL------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           R               +        + +          G V      E R+LE+ M N  
Sbjct: 139 RSVLNAGAGGVQAQADATAVLRFVDVVLDPVSHRVTRAGRVLAPGPTEYRLLEFFMRNPN 198

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++  +  +++      VE   V+ HI +LR+ L      D + + R  GY++D
Sbjct: 199 RVFSREDLLRSVWERG-VHVESRTVDVHIRRLRRILNEGDLPDLIRTVRASGYALD 253


>gi|240850121|ref|YP_002971514.1| two-component system regulatory protein [Bartonella grahamii
           as4aup]
 gi|240267244|gb|ACS50832.1| two-component system regulatory protein [Bartonella grahamii
           as4aup]
          Length = 221

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G   +     E   +L S+   D   ++  L       +
Sbjct: 3   ILIVEDDRNLHHQLAEAVRRAGYVSDSAFDGEEAYFLGSTESYDAVILDIGLPY--IDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +    R     +P++ ++        +   D+G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  RVVEKWRQEGHSMPVLMLTARDRWSDKVHGIDAGADDYVVKPFHLEEVMARLRALIRRAT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +    G + + +      V G++  L   E R+L YLM +  + +++T++   +Y 
Sbjct: 121 GHATSALCCGNVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCDRVISRTELTEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N VE  + +LRKKL    G D +++ R +GY +
Sbjct: 181 Q-DFDKDSNTVEVFVGRLRKKL----GVDLIETIRGMGYRV 216


>gi|228995978|ref|ZP_04155634.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003595|ref|ZP_04161411.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757637|gb|EEM06866.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763751|gb|EEM12642.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 230

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S +       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR+ S VP+I ++        +     G DD + KP H  E+LAR+ A+ RR   
Sbjct: 62  ETCNRIRSFSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVLRRSNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     I          V  +   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 H-EQLRYKGILWDEAKHFITVYEQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           D   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 DTNTEDRTVDSHIRNLRDKLRKNNFPIDEHLKTVYGVGYR 219


>gi|167031851|ref|YP_001667082.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166858339|gb|ABY96746.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 224

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLP--GLDGYG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSSSH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   + +    R     G+   L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPLQVQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFDNKLLHTIRGMGYVLE 220


>gi|311070908|ref|YP_003975831.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310871425|gb|ADP34900.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 258

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  +   ++ + EE +Q   +     I   L+      +
Sbjct: 32  ILLVEDDRSISEVVDHYLTKEGFHV--VHAFDGEEGIQLFRQNAFDLILLDLMLPKLNGM 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L +IIR  S++P++ IS              G DD + KP    E+ ARV A  RR   
Sbjct: 90  DLLKIIREQSKIPVLIISAKDGDVEKALGLGFGADDYIAKPFSMIELSARVKAAIRRATQ 149

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N      + +  +      + EV  L  +E +I++ L  N  K   + QI+
Sbjct: 150 YAVNEPAETNIIRVHELTLDIENVLITKKDEVIQLTSKEWQIIKLLFTNPKKVFTREQIY 209

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +++   D   +EN++  H+ +LR+K+ +       + +   +GY +
Sbjct: 210 RSVWNE-DYYGDENIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 255


>gi|228471212|ref|ZP_04056025.1| transcriptional regulatory protein ResD [Porphyromonas uenonis
           60-3]
 gi|228307027|gb|EEK16109.1| transcriptional regulatory protein ResD [Porphyromonas uenonis
           60-3]
          Length = 233

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
            +++DD   +++        +G  +    +   EE L+       +  ++  +   G   
Sbjct: 8   LLIVDDEEDLREILTFNLASEGYQVS--TAANAEEALKMPLEEYHLLILDVMMP--GMNG 63

Query: 61  LELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +L  +IR   +   P+I ++   +    L  F+ G DD + KP   +E+ AR+ AI  R
Sbjct: 64  FKLAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQAILMR 123

Query: 119 LKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              S      ++ E G + +  D +   V GE+  L ++E  IL  L  + GK  ++ +I
Sbjct: 124 FLQSGPDFGESQIEIGTLLIDLDAKQVFVHGELIELTKKELEILVLLARDPGKVFSREEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++   D  V E  ++ HI+++RKKLR+  G   + ++   GY +
Sbjct: 184 LDRVW-REDVFVLERTIDVHITRIRKKLRS--GGIKIINRSGFGYCL 227


>gi|17549773|ref|NP_523113.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17432028|emb|CAD18705.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 246

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE----EWLQSSAREDVSAIEAFLIGKGE 58
           +L++D  ++ +        DG +++     E          +++    S  +  L+  G 
Sbjct: 7   LLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAIGAPGAASEAGGSMFDLMLLDLGL 66

Query: 59  ---KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                L++   +R     +P++ ++   ++   +   ++G DD + KP   +E+ AR+ A
Sbjct: 67  PKRDGLDVVHEVRRRGITLPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAARMHA 126

Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + RR     +     G + +    R+    G    L  RE  +L  L++  GK  +  Q+
Sbjct: 127 LLRRQGGRADPLMRHGEVLLNPVTREVLRAGMPIKLSGREFAVLHALLSRPGKVWSIAQL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +YG +DE V  N VE +I  LRKKL +      + + R +GY I
Sbjct: 187 QDNLYG-WDEEVGSNTVEVYIHALRKKLGSHF----IQNIRGVGYVI 228


>gi|320160200|ref|YP_004173424.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994053|dbj|BAJ62824.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 229

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD++ V+        + G  +      +   ++      D+  ++  +        
Sbjct: 5   ILIVDDQSSVRQLLQEYLTEQGYRVLTTTDGQSALYIARHENPDLILLDIMMPR--MDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R  R   Q P+I I+        +   D G DD + KP   RE+ AR+ AI RR + 
Sbjct: 63  QFLRQFRQERQTPVIIITAREEETDAVLGLDLGADDYIIKPFRMRELAARIRAILRRGEE 122

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             ++ E    G I +        V G+   L   E  +L  LM + G+   + ++   I 
Sbjct: 123 HPDKQEILRAGEIILDETTHTVTVSGKPVSLTPIEFDLLATLMRSPGRVYTRAELVE-IL 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                A  +  +  H+  LR K+  +      +++   +GY  
Sbjct: 182 ADSGFAGIDTTLNVHVRNLRLKIEPDPKNPRYIETIFGIGYRF 224


>gi|293604231|ref|ZP_06686639.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817456|gb|EFF76529.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 219

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +     +  +++        E    +   D+  ++  L  +    L
Sbjct: 3   ILLVEDDVMIGESVLDCLRAEHYAVDWVKDGNAAELALRTDTYDLILLDLGLPKR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L R +R      P++  +   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  GLLRDLRGRKDRTPVLIATARDAVSDRIAGLDAGADDYIVKPYDVDELLARMRALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   I +        V G    L  RE  +LE L+A  G   ++ Q+   +Y 
Sbjct: 121 GRAEPVFEHEGITIDPQAHAAMVDGTPVALTAREWAVLEPLIARPGMIFSRAQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  V  N VE +I  LRKKL    G + + + R +GY I
Sbjct: 181 WKDS-VSSNAVEVYIHGLRKKL----GPNLIQNVRGVGYVI 216


>gi|16129093|ref|NP_415648.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. MG1655]
 gi|89107976|ref|AP_001756.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. W3110]
 gi|157160654|ref|YP_001457972.1| DNA-binding transcriptional regulator PhoP [Escherichia coli HS]
 gi|170020477|ref|YP_001725431.1| DNA-binding transcriptional regulator PhoP [Escherichia coli ATCC
           8739]
 gi|170080781|ref|YP_001730101.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. DH10B]
 gi|188494074|ref|ZP_03001344.1| DNA-binding response regulator PhoP [Escherichia coli 53638]
 gi|238900384|ref|YP_002926180.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli BW2952]
 gi|256023172|ref|ZP_05437037.1| DNA-binding transcriptional regulator PhoP [Escherichia sp.
           4_1_40B]
 gi|300906951|ref|ZP_07124623.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300917903|ref|ZP_07134536.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300949478|ref|ZP_07163476.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300955536|ref|ZP_07167898.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|301029561|ref|ZP_07192639.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301306074|ref|ZP_07212152.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301644548|ref|ZP_07244541.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307137765|ref|ZP_07497121.1| DNA-binding transcriptional regulator PhoP [Escherichia coli H736]
 gi|312971266|ref|ZP_07785444.1| transcriptional regulatory protein phoP [Escherichia coli 1827-70]
 gi|331641674|ref|ZP_08342809.1| transcriptional regulatory protein PhoP [Escherichia coli H736]
 gi|130126|sp|P23836|PHOP_ECOLI RecName: Full=Transcriptional regulatory protein phoP
 gi|147254|gb|AAA24377.1| phoP [Escherichia coli]
 gi|216608|dbj|BAA14390.1| PhoP protein [Escherichia coli K-12]
 gi|1651558|dbj|BAA35952.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K12 substr. W3110]
 gi|1787375|gb|AAC74214.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. MG1655]
 gi|157066334|gb|ABV05589.1| DNA-binding response regulator PhoP [Escherichia coli HS]
 gi|169755405|gb|ACA78104.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169888616|gb|ACB02323.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. DH10B]
 gi|188489273|gb|EDU64376.1| DNA-binding response regulator PhoP [Escherichia coli 53638]
 gi|238860868|gb|ACR62866.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli BW2952]
 gi|260449731|gb|ACX40153.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|299877556|gb|EFI85767.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300317575|gb|EFJ67359.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300401298|gb|EFJ84836.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300414893|gb|EFJ98203.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300451114|gb|EFK14734.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300838646|gb|EFK66406.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301077130|gb|EFK91936.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|309701454|emb|CBJ00758.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310336468|gb|EFQ01654.1| transcriptional regulatory protein phoP [Escherichia coli 1827-70]
 gi|315135762|dbj|BAJ42921.1| DNA-binding transcriptional regulator PhoP [Escherichia coli DH1]
 gi|315252615|gb|EFU32583.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|315616012|gb|EFU96638.1| transcriptional regulatory protein phoP [Escherichia coli 3431]
 gi|323937870|gb|EGB34134.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323942600|gb|EGB38767.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|331038472|gb|EGI10692.1| transcriptional regulatory protein PhoP [Escherichia coli H736]
          Length = 223

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R++   +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221


>gi|281603735|gb|ADA76719.1| Catabolic regulation response regulator [Shigella flexneri 2002017]
 gi|332749163|gb|EGJ79586.1| transcriptional regulatory protein creB [Shigella flexneri K-671]
 gi|333022265|gb|EGK41503.1| transcriptional regulatory protein creB [Shigella flexneri K-304]
          Length = 229

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A +  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALYPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V+ HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDIHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|221134984|ref|ZP_03561287.1| osmolarity response regulator [Glaciecola sp. HTCC2999]
          Length = 241

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLVEQGFQVRSAANAEQMDRLLERENFHLIVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + R +R   + +P+I ++        +   + G DD + KP + RE+LAR  A+ RR  
Sbjct: 66  SICRRLRQKENTIPIIMLTAKGDEIDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRKS 125

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    +    E    ++    R+    G+   L   E  +L+ L+ +  + +++ +
Sbjct: 126 AEAPGAPSQAEQIVEFAHYKLNLATREMSADGKPMTLTSGEFAVLKSLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D    E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYGALERSIDVQVSRLRRMLEQDPTNPRYIQTVWGLGYVF 233


>gi|125973317|ref|YP_001037227.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256006166|ref|ZP_05431082.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417519|ref|ZP_06248539.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125713542|gb|ABN52034.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255989869|gb|EEU00035.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281408921|gb|EFB39179.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316940451|gb|ADU74485.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 225

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +  +     +   ++        + +  +   +V  ++  L  K    L
Sbjct: 3   ILLVEDEVRLSEALVHTLKKNNYIVDVAFDGITGQQMAETNMYNVIILDRMLPKK--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R      P++ ++   S++  ++  DSG DD + KP    E+LAR+ A+ RR  
Sbjct: 61  DVLRDLRKQGVTTPVLILTAKDSVKNRVEGLDSGADDYLTKPFSKSELLARIRALGRRQS 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N     G +       + +V G+   L  +E +ILE L+ N+   V+K Q+   ++
Sbjct: 121 EIFVNEEINIGNMSFNCMKGEIKVNGQTIKLTSKESQILEILIKNKNIVVSKEQLLEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G F   +E N +E ++S LRKKL        +++ R  GY +
Sbjct: 181 G-FQTDIELNNIEVYLSYLRKKLSKLDCGIVIETIRARGYCL 221


>gi|300853321|ref|YP_003778305.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300433436|gb|ADK13203.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 230

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G  +    ++E  + + +    D+  ++  L        
Sbjct: 4   ILLVEDDKSLNRGISFKLSKEGYKVFSSRTIEEAKIILAENSVDLMILDVGLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           +L   +R  + + +I ++        +   D G DD + KP     +++++ A+ RR   
Sbjct: 62  DLCGEVRKKNDLLIIFLTACDQEIDIVTGLDMGADDYIAKPFSLMVLMSKINALLRRNSN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  + +  +G I             E   L + E ++L+YLM N G+ + K Q+ + ++ 
Sbjct: 122 KNQSKKIVSGDIVFSITDMKVLKNEEELFLSKTEIKLLKYLMDNAGQIITKDQLLNKLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           + +  V++N +  +I +LR+K+ +       + + R +GY
Sbjct: 182 IDNTFVDDNTIAVNIRRLREKIEDNPSKPKYIKNVRGMGY 221


>gi|290352167|dbj|BAI78794.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMYGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|282896672|ref|ZP_06304680.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|282900162|ref|ZP_06308118.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194911|gb|EFA69852.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281198390|gb|EFA73278.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 247

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +         G  +         + L    + D+  ++  L        
Sbjct: 4   ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLILLDLMLPRV--DGF 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 62  TICQRLRRDERTAEIPVLMLTALNQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G + +  +  +     E   L   E  +L  L+   G+ V+ ++
Sbjct: 122 ADRIPQAAKHSEILNYGSLTLVPERFEAIWFHETVKLTHLEFELLHCLLQRHGQTVSPSE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 182 ILREVWG-YDPDDDIETIRVHIRHLRTKLEPDPRRPRYIKTVYGAGYCLE 230


>gi|228942401|ref|ZP_04104939.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975334|ref|ZP_04135890.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981970|ref|ZP_04142264.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228777731|gb|EEM26004.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228784316|gb|EEM32339.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817242|gb|EEM63329.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 219

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 14/225 (6%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKVLEL 63
           +DD + +++        +G  +    + +  E L+      DV  ++  L        EL
Sbjct: 2   VDDESSIRNLIRMQLEMEGYEV--LAAADGREALERWNEGPDVLILDVMLPDT--DGYEL 57

Query: 64  PRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K  
Sbjct: 58  LRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKT 117

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++   +
Sbjct: 118 ENAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKV 177

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 178 WG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 219


>gi|298500471|ref|ZP_07010275.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757]
 gi|297540640|gb|EFH76697.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757]
          Length = 241

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGLS 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R +R  +  +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G    A+EE  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGREYSAMEERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 233


>gi|160899673|ref|YP_001565255.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365257|gb|ABX36870.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 220

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D ALV  G  A     G  ++   S    +    S+  D   ++  L    E  L 
Sbjct: 4   LLVEDNALVASGVRAGLQLQGFGVDTVASAGQADAAIRSSHFDACVLDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L    R    QVP++ ++   ++   ++   +G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  LLARWRGQGLQVPVLVLTARDAVSQRIEGLQTGADDYLVKPFDLHELAARLHALLRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +  E G +R+       + QG    L RRE  +L  L+ + G+ ++  Q+  ++YG 
Sbjct: 122 RSVDWIELGEVRINPAAGHIQRQGRTVELSRREWSLLRALLQSPGRILSTEQLRDSLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + VE N V  H+  LR+KL    G + V++ R  GY +
Sbjct: 181 YSQDVESNAVNVHVHHLRRKL----GHELVETVRGEGYRL 216


>gi|326382019|ref|ZP_08203712.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326199445|gb|EGD56626.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 233

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G   +   +      +  +    +  ++  L   G   LE
Sbjct: 11  LLAEDDTAIAEPLARALTREGNDCDIAGTGPDALKMVMTGDYGLLILDLGLP--GMDGLE 68

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+   Q+P++ ++        +   D+G DD V KP    E+LARV A+ RR   
Sbjct: 69  VCRRVRSELPQLPVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELLARVRALMRRSVA 128

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +       + G IR+ S  R   V GE   L  RE  +L +LM   G+ V++  I +A++
Sbjct: 129 AVDEEEVLDIGGIRLDSRARRVVVDGEDLTLANREFDLLRFLMERAGEVVSRDDIMTAVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221
           G  D       ++ HIS +R+K+ +    +   + + R +G+  D
Sbjct: 189 GSTD-LRSSKTLDMHISWIRRKIGDDRPKERRHIVTVRGVGFRFD 232


>gi|312884061|ref|ZP_07743775.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368280|gb|EFP95818.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 218

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  ++ +   A       + +   + E       +    +  ++  L   G   L+
Sbjct: 4   LLVEDDTMLGETMTASLARHHYTADWVTTGESALHALQTDSFPLVILDISLP--GISGLQ 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           + + +R      P++ +S    L   +   + G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VLKKMRDRGDKTPVLILSARDELNDRVYGLNHGADDYLVKPFQLEELLARMGALIRRSAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +++      + +        +  E   L   E +IL+YL+ N G+ ++KTQI   ++G 
Sbjct: 122 SADDIITVRDVSMSIHSHKVSIAEEEINLTPNEFKILQYLITNAGRVLSKTQILQNMHG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +DE+   N +E HI  LRKK+        +++ R +GY I
Sbjct: 181 WDESAGLNSIEVHIHNLRKKMPKGT----IENIRGVGYII 216


>gi|89899322|ref|YP_521793.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344059|gb|ABD68262.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 234

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G  +      +       S   D+  ++  L       L
Sbjct: 5   LLMIEDDTRLAQMVSEYLAQSGFVVGHAGDGQTGLTDLQSDPPDLVILDLMLPD--MDGL 62

Query: 62  ELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E+ R IR    A +Q+P++ ++        +   + G DD + KP   RE+LAR+ A+ R
Sbjct: 63  EVCRRIRSLPGALAQIPVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAVLR 122

Query: 118 R----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R          +   G + +  D R   V G++  L   +  +L  L    G+ + + QI
Sbjct: 123 RHVEGAHPVQTQLRFGTLEIDRDARSVSVAGQLCDLTSYQFDLLVALAERAGRVLTRDQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             A+ G   +A +   ++ H+ ++R  +  +      + + R +GY  
Sbjct: 183 MEAVRGRELDAFD-RSIDVHMGRIRAAIELDAKDPKRILTVRGVGYVF 229


>gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. CB0205]
          Length = 253

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++          G  +    +         ++  DV  ++  +        
Sbjct: 12  ILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASEPDVVVLDVMMPE--LDGF 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   IRA S+VP+I ++    +   +     G DD + KP   +E+ AR+  + RR+  
Sbjct: 70  AVTERIRAQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRVSS 129

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      +++    G + +  + R      E   L   E  +LE L++  G+ +++
Sbjct: 130 VQANGVAGPGRTSHVVVVGDLSIDFNKRQAHRGDERIRLTGMEFNLLELLLSRSGEPISR 189

Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             +   ++G   + + +  VV+ HIS+LR KL +     + + + R LGY  
Sbjct: 190 LDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEDDPENPELILTARGLGYMF 241


>gi|311031011|ref|ZP_07709101.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 230

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++GV +    + +  E L+     +V  I   ++      + 
Sbjct: 7   LVVDDEKEIRDAIEIYLKNEGVRV--LKAQDGVEALEMLHENEVHLILLDVMMPRLDGIS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR    +P+I +S        +     G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATHRIREEKNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVTL 124

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +      +   + +  + ++  VQG+   L   E +I+E LM N G+  +   I+  
Sbjct: 125 GTFEGIKKVIDLNGLTIDKESKEVTVQGDPVKLTPIEYKIVELLMTNAGRVFSINDIYER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++       E N V  HI K+R+K+  +      +     +GY ++
Sbjct: 185 VWKEPGYNAE-NTVAVHIRKIREKIEIDPKNPRYLKVVWGIGYKME 229


>gi|307825418|ref|ZP_07655637.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307733593|gb|EFO04451.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 224

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A++ DG        G S+    +  + + L  +   D+  ++  L       L
Sbjct: 3   ILLIEDDAVLADGLTHTLSGSGYSVTSATTGGYADQLLQAQGFDLIVLDLGLPD--MDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL R +R+    +P++ ++    +   ++  + G DD + KP   RE+ ARV A+ RR  
Sbjct: 61  ELLRKLRSRKIPLPILILTARDGVNDRINGIEQGADDYMTKPFELRELEARVHALIRRCY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N    G + + +      V G+   L  RE  +LE L+   GK V+K +I   +  
Sbjct: 121 GGFSNDIVIGRLALDTHNHQVLVDGQTINLSAREYGVLEILLIQAGKVVSKDRIAQRL-A 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  +A+ +N VE ++ +LRK++        + + R LGY ++
Sbjct: 180 VDGDALTDNAVEIYVHRLRKRIEPYGA--VIRTVRGLGYLLE 219


>gi|134096807|ref|YP_001102468.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909430|emb|CAL99542.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 219

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 13/223 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L++D A++++         G  +    + L   E  Q+ A   V+ ++  L       +
Sbjct: 2   LLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQADA-PQVAVLDVMLPN--LDGI 58

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR  S VP++ +S        +   ++G DD V KP     ++AR+ ++ RRL+ 
Sbjct: 59  ELCRRIRGCSHVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRRLRR 118

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               A      G + V  D  +    G   PL   E R++    A  G  + ++ +   +
Sbjct: 119 EPAPASAVRTFGDLEVDLDSLEVRRAGRSVPLTPTELRLVLEFAAQPGVVLTRSALLERV 178

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    +  VV+ H+ +LR K+    G + V++ R  GY +
Sbjct: 179 WD-YAWGGDTRVVDVHVQRLRAKI----GRERVETVRGFGYKL 216


>gi|255283760|ref|ZP_05348315.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
 gi|255265643|gb|EET58848.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
          Length = 230

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +  +  ++ +            +  ++  +   G    E
Sbjct: 5   LIIDDDKELCALIKRSVLPEAIEADCCDTGKEGLKKLKEKEYQLVILDVMMP--GMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IRA + +P++  +      + +    +G DD + KP    E++AR+ ++ RR    
Sbjct: 63  TLEKIRAENSLPILMFTSKNDSASKVRGLRAGADDYLTKPFDMDELIARIVSLIRRYTRF 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + ++     + +  + R        F LP +E  IL +   N+GK + K +I+  
Sbjct: 123 NQPGGTPHQLHFDGLEIDLESRSVTTMNGTFELPPKEFDILLFCAKNQGKILTKQRIYEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           ++G      + N + + IS+LRKK+    G    + + + +GY  +
Sbjct: 183 VWGGEYFYDDSN-IMAIISRLRKKIEENPGSPKYIQTIKGIGYRFN 227


>gi|187779726|ref|ZP_02996199.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC
           15579]
 gi|187773351|gb|EDU37153.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC
           15579]
          Length = 234

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+++  F + +  + L     +D+  I   ++      ++
Sbjct: 11  LIVDDEDEIREAIEIYLKNEGITV--FKAKDGIDALMLLEDQDIHLIIMDIMMPKMDGIK 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR +  +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 69  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVNL 128

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + ++   G + +    +   V  +   L   E +ILE L+ N+G+  +  +I+  
Sbjct: 129 GNYKETEDKVVAGSLILDKKRKIVSVDEKEIRLTPIEYKILELLIENKGRVFSIEEIYEK 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 189 AWKEPYYNGE-NTVAVHIRRIREKIEINPREPRYLKVVWGIGYKI 232


>gi|221069936|ref|ZP_03546041.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714959|gb|EED70327.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 257

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 19/229 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G  A       +++   S+       S+ R D   ++  L        
Sbjct: 29  ILVVEDNEGIAAGLRANLMQRSYAVDVCASVAEAWHALSTERFDAVLLDLGLSD--GDGS 86

Query: 62  ELPRIIRAHS-----------QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
           E+ R +R  +             P++ ++    +Q  +   + G DD + KP    E+ A
Sbjct: 87  EVVRRLRLQTGRPGVPQLPDPATPVLILTARDQVQDRVAGLNLGADDYLVKPFDMDELEA 146

Query: 111 RVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           R+ A+ RR    ++       + V    R     G+   +  RE  +L  L+  RG+ ++
Sbjct: 147 RLRAMMRRAAGQASPVIRHADLEVDPAARTIRQAGQKVEVSPREFAVLWALLLARGRVLS 206

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           + QI   +Y   D  VE N VE ++  LRKKL  K+    + + R +GY
Sbjct: 207 RPQIEEHLYSWGD-TVESNAVEVYVHHLRKKLGQKI----IVTMRGVGY 250


>gi|226945181|ref|YP_002800254.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226720108|gb|ACO79279.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 249

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G      +  E  E    S R  +  ++  L       +E
Sbjct: 25  LLVDDDHELTALLTEYLAREGFVATAVHDGELGELEALSGRYAIVVLDVMLPR--LSGIE 82

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R IR+HSQ+P++ ++        +   D G DD V KP    E++AR+ AI RR    
Sbjct: 83  VLRRIRSHSQIPVLLLTARGDNIDRIAGLDLGADDYVPKPSSPGELVARLRAILRRTGVQ 142

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + + +    G + ++   R  E QG    L   E ++LE L  + G+ V+K  +   
Sbjct: 143 AQPEQAADAVRAGALTLWPARRKAEWQGAPLELTGTEFQLLEELARHVGQLVSKQDLSIN 202

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             G      +   ++ HIS +R+KL  +   +P + S R  GY +
Sbjct: 203 ALGRPLTRFDRR-IDVHISSIRQKLGQRGDGEPWIQSVRGQGYQL 246


>gi|291619427|ref|YP_003522169.1| CpxR [Pantoea ananatis LMG 20103]
 gi|291154457|gb|ADD79041.1| CpxR [Pantoea ananatis LMG 20103]
          Length = 267

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G  +   +  E    L  ++  D+  ++  +  K    +
Sbjct: 39  ILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLLDNS-IDLLLLDVMMPKK--NGI 95

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 96  DTLKELRQQYQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 155

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S  +          E   +R+    ++     E   L   E  +L  L  + G+ V++  
Sbjct: 156 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDSETLDLTGTEFTLLYLLAQHLGQVVSREH 215

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   + G     + R  GY
Sbjct: 216 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPDRRDGHPWFKTLRGRGY 261


>gi|225025447|ref|ZP_03714639.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC
           23834]
 gi|224941731|gb|EEG22940.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC
           23834]
          Length = 226

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +           +     + E    L +    D+  ++  L        
Sbjct: 5   ILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDT--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           EL + +R     P+I ++        +   + G DD + KP   RE++ARV A+ RR   
Sbjct: 63  ELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQT 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + +                    QG   PL + E R+L  L+   G+  ++ ++ +A++G
Sbjct: 123 RPAAKTESVPVWHDDVPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAMFG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             +   + + + +HI  LR KLR      + + +   LGYS +
Sbjct: 183 G-NRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSFN 224


>gi|108803626|ref|YP_643563.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764869|gb|ABG03751.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 231

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A + +    L   +G  +                  D+  ++  +        
Sbjct: 5   ILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPR--LSGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116
           E+ + IR  S VP+I ++        +   + G DD + KP   +E+LAR+ AI      
Sbjct: 63  EVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRRLGR 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R     +     GP+ + ++       GE   L   E +IL  L+   G+   + QI  A
Sbjct: 123 REGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRAQISEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
           +       +    ++ HIS+LR K+ R+    + + +   +GY 
Sbjct: 183 V-STGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225


>gi|312792501|ref|YP_004025424.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179641|gb|ADQ39811.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 217

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++         +G  +E  +           +   V  ++  L  K     
Sbjct: 3   ILLIEDEEKLRKIIKLYLEKEGFEVEEVSDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +  F+ G DD V KP+  +EI+ARV AI +R K 
Sbjct: 61  SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTKK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+      + +    R+  V+G+   L ++E  +L YL   +   +++ QI ++++G +
Sbjct: 121 PNSN---DILFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG-Y 176

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +   V++HI  LR+KL +    D + + R  GY  + 
Sbjct: 177 EYYGDLRTVDTHIKNLREKLGDL--RDYIKTVRGYGYKFEV 215


>gi|293605203|ref|ZP_06687591.1| response regulator [Achromobacter piechaudii ATCC 43553]
 gi|292816388|gb|EFF75481.1| response regulator [Achromobacter piechaudii ATCC 43553]
          Length = 233

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 7/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G ++    +   +  +++  R D +     L+  G   L+
Sbjct: 5   LLVEDDPKLSRLIAQFLEQHGFNV--AQAYRGDHAVEAFRRHDPAITILDLMLPGRDGLQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R +RA S  P++ ++        +   +SG DD V KP+  R +LAR+ A+ RR    
Sbjct: 63  VCRDLRAFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHNKG 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   ++ E GP+ +    R     G    L   E  +L  L +  G+ + +  + +A+ G
Sbjct: 123 QEQADQLEFGPLSIDRHTRSVRHAGVEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVRG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           + +    +  V+  +SKLR+KL +       + +    GY
Sbjct: 183 I-EFNGLDRSVDVCVSKLRRKLDDDPRDPARIKTIWGKGY 221


>gi|261212338|ref|ZP_05926623.1| transcriptional regulator [Vibrio sp. RC341]
 gi|260838269|gb|EEX64925.1| transcriptional regulator [Vibrio sp. RC341]
          Length = 218

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 101/221 (45%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   +  ++    +  Q   + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--DCLHAETIADVKQHWDKADLVILDRQLPD-GDSVQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            L    +    +P+I ++   +++  +   D+G +D + KP    E+ AR+ A  R    
Sbjct: 62  HLMDW-KKLKDIPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRSPDN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +++  T  + +    R+    GE   L R E  +L +L +N G+   + ++   ++G
Sbjct: 121 GQDDSKVVTANLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDELLDHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 -YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 216


>gi|313900856|ref|ZP_07834346.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2]
 gi|312954276|gb|EFR35954.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2]
          Length = 226

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +E   +++  + ++   + +   I   ++       
Sbjct: 4   LLVVDDEERIRSMIRKYGEFEGHEIE--EAVDGMDAIEKCKQAEYDLIIMDIMMPNLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + IR   Q P+I +S        +  F+ GVDD V KP   +E++ RV+AI +R   
Sbjct: 62  SAVKEIRKDVQTPVIMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVSAILKRYHG 121

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             N           +++    R   +  +   +  +E  +L YL+ N G  + + Q+   
Sbjct: 122 DVNTRKKDIYTYEGLKIDFTARKVFIDDKEVEMSPKEYVLLFYLVRNEGIALTREQLIHD 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  +++HI  LRK L++      + + R +GY  +
Sbjct: 182 VWG-YDFYGDDRTLDTHIKLLRKSLQDY--SRLIITLRGVGYRFE 223


>gi|297563709|ref|YP_003682683.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848157|gb|ADH70177.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 219

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 94/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +     +         +   D+  ++  L        
Sbjct: 4   ILIVEDEERIASFVRKGLDASGFTTTVVGTGAEAVDYAVTGGFDLMLLDLGLPDT--DGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R+    +P++ ++    ++ T+   + G DD V KP    E+LARV    R  +
Sbjct: 62  DVLRRVRSLGVDIPVVILTARDGVRDTVTGLEIGADDYVTKPFRFEELLARVRLRMRNER 121

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       G + +    R   V+G    L  RE  +LE LM + G+ + + Q+ S ++G
Sbjct: 122 PTELTVLRAGGLALDLRTRRVAVEGTSVDLTAREFSLLELLMRHPGQVLTRQQMLSHVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVV+  +  LR+K    +G + + + R +GY +
Sbjct: 182 -YDYDPGSNVVDVFVRALRRK----VGAERIVTVRGMGYRL 217


>gi|89902579|ref|YP_525050.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347316|gb|ABD71519.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 221

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  + L   +G +++     E  +    S   D+  ++  L  +    L
Sbjct: 3   LLLVEDDLMIGESVLDLLRAEGYAVDWVKDGEMADTALDSQTYDLVLLDLGLPRR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA     P++  +   ++   ++  D G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  AVLRRLRARKDRTPVLVATARDAIAQRVEGLDMGADDYIVKPYELDELLARIRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   + +    R+  + G+   L  RE  ILE L+A  G  +++ Q+   +Y 
Sbjct: 121 GRAEPVYEHLGVSINPVTREVLLDGQAVVLSAREWSILELLLARPGMVLSRRQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D+ +  N VE +I  LRKKL    G   + + R +GY I
Sbjct: 181 WKDD-LSSNAVEVYIHGLRKKL----GPRIIQNVRGVGYMI 216


>gi|28899632|ref|NP_799237.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260895491|ref|ZP_05903987.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus Peru-466]
 gi|28807884|dbj|BAC61121.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088063|gb|EFO37758.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus Peru-466]
 gi|328472243|gb|EGF43113.1| transcriptional regulator CpxR [Vibrio parahaemolyticus 10329]
          Length = 229

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      +S   D+  I   ++      +
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAINS---DIDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R + + P++ ++        +   + G DD + KP   RE+LAR+ AI RR   
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSN 120

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          E   +R++   ++     ++  L   E  +L + + N G  + K  +  
Sbjct: 121 TQKNGKNSDCIEYQELRLYPGKQEAYCDQQLLDLTATEFALLTHFVQNPGHVLTKETLSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|294139946|ref|YP_003555924.1| DNA-binding response regulator [Shewanella violacea DSS12]
 gi|293326415|dbj|BAJ01146.1| DNA-binding response regulator [Shewanella violacea DSS12]
          Length = 237

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        D   +L+  +  E   +       D   I+  L       +
Sbjct: 3   ILLVEDDLELQKNLKQHLLDANFTLDVASDGEDGLFQGCEHNYDAGIIDVGLP--KLNGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL   +R      P++ ++   S Q  +   D+G DD + KP H +E++AR+ A+ RR  
Sbjct: 61  ELITRLREQEVDFPILILTARDSWQDKVAGLDAGADDYLTKPFHPQELIARLNALIRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     GP  + +   + +  G +  L   E ++ E+ M + G+  +KT +   IY 
Sbjct: 121 GKASPLVHNGPFSINTSTLEVKKSGHLMSLSSSEYKLFEFFMLHLGEVKSKTVLIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  ++ NV+E  I +LRKKL        +++ R  GY +
Sbjct: 181 Q-DFDLDSNVIEVFIRRLRKKLDPDNQLGLIETLRGQGYRL 220


>gi|94991797|ref|YP_599896.1| response regulator CsrR [Streptococcus pyogenes MGAS2096]
 gi|94545305|gb|ABF35352.1| Response regulator CsrR [Streptococcus pyogenes MGAS2096]
          Length = 228

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE +VV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETHVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|18311314|ref|NP_563248.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|168205161|ref|ZP_02631166.1| response regulator [Clostridium perfringens E str. JGS1987]
 gi|168210364|ref|ZP_02635989.1| response regulator [Clostridium perfringens B str. ATCC 3626]
 gi|168213243|ref|ZP_02638868.1| response regulator [Clostridium perfringens CPE str. F4969]
 gi|168216703|ref|ZP_02642328.1| response regulator [Clostridium perfringens NCTC 8239]
 gi|182625784|ref|ZP_02953551.1| response regulator [Clostridium perfringens D str. JGS1721]
 gi|18145997|dbj|BAB82038.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|170663254|gb|EDT15937.1| response regulator [Clostridium perfringens E str. JGS1987]
 gi|170711562|gb|EDT23744.1| response regulator [Clostridium perfringens B str. ATCC 3626]
 gi|170715305|gb|EDT27487.1| response regulator [Clostridium perfringens CPE str. F4969]
 gi|177908940|gb|EDT71427.1| response regulator [Clostridium perfringens D str. JGS1721]
 gi|182381236|gb|EDT78715.1| response regulator [Clostridium perfringens NCTC 8239]
          Length = 230

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   A    +G S+  F+    EE L+      +  I   L+       
Sbjct: 3   ILLVDDEEKIIEVLEAYLKKEGFSV--FSCSNGEEALKIFDNNKIDLILLDLMLPDLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IRA S VP+I I+     +  L+ FD G DD V KP   ++++AR+ AI RR   
Sbjct: 61  EVCKVIRAKSCVPIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRRSTP 120

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N          G +++  D R+  V+ E+  L   E  IL  L +   K   + +I  
Sbjct: 121 CPNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIFTRDEIIE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            + G   ++ +  V++SHI  LR K+         + +   +GY  +
Sbjct: 181 LVLGDKSDSFD-RVIDSHIKNLRGKIEENTRKPKFIVTVYGVGYKFE 226


>gi|299541871|ref|ZP_07052194.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
 gi|298725609|gb|EFI66250.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +           G S+ + FN  +     + + + D+  ++  L  K    
Sbjct: 4   ILVIEDEYPISQVLKVYLQKVGYSVTQCFNGGQALVMFRET-QPDLVLLDIMLPEK--NG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + IR  S  P+I ++    +   L+ FD G DD + KP    E++ARV A+ RR  
Sbjct: 61  WTILKEIRERSTCPVIMLTALGEVNYRLEGFDHGADDYIGKPFIADEVVARVRAVLRRAV 120

Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S + A   + G + +        + GE   L  R+  +L +L  +  +   + Q+   +
Sbjct: 121 GSPDSATSKQYGSLVIDCKAHKVLLHGEEIVLTPRDLSVLMFLADHPNQTFTRDQLIDQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +G ++    +  V+  I +LRK L+     +  + + R LGY +
Sbjct: 181 WG-WEYEGSDRAVDLAIKRLRKALKEWDEAEGEIKTLRGLGYQL 223


>gi|229076471|ref|ZP_04209433.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|229099686|ref|ZP_04230613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228683756|gb|EEL37707.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228706657|gb|EEL58868.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 223

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LVAADGREALEKWNEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K      S+     G + +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 223


>gi|157146166|ref|YP_001453485.1| DNA-binding transcriptional regulator PhoP [Citrobacter koseri ATCC
           BAA-895]
 gi|157083371|gb|ABV13049.1| hypothetical protein CKO_01922 [Citrobacter koseri ATCC BAA-895]
          Length = 224

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQDLGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPD--EDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R++   +P++ ++     Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 63  LIRRWRSNDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVVARMQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVISIPPFQVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQARYPDDVITTVRGQGYLFE 222


>gi|167917734|ref|ZP_02504825.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
          Length = 239

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       +  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 180 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 219


>gi|320638620|gb|EFX08325.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
           G5101]
          Length = 229

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLLYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+   ++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDIVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|228911099|ref|ZP_04074906.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228923993|ref|ZP_04087270.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835792|gb|EEM81156.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228848603|gb|EEM93450.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 219

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 14/225 (6%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKVLEL 63
           +DD + +++        +G  +    + +  E L+      DV  ++  L        EL
Sbjct: 2   VDDESSIRNLIRMQLEMEGYEV--LAAADGREALERWNEGPDVLILDVMLPDT--DGYEL 57

Query: 64  PRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K  
Sbjct: 58  LRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKT 117

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++   +
Sbjct: 118 ETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKV 177

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 178 WG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 219


>gi|209520018|ref|ZP_03268796.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209499557|gb|EDZ99634.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 219

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 104/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+  G  A     G +++             + +  +  ++  L       L
Sbjct: 3   LLLVEDDELIGCGVEAGLRQAGFTVDWARDGHKAGLALDTTQYALVVLDLGLPRV--SGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R A   VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR +
Sbjct: 61  ELLKRVRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELVARCHALLRRAQ 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      + V    +  +V     PL  RE  IL  L+ N G   +++++  ++YG
Sbjct: 121 GRSIDLIRYQNLTVNPAAQTVQVDEARVPLTSREWAILLQLLTNLGIPQSRSRLEESLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E +E N +E H+S LRKKL    G + + + R +GY ++
Sbjct: 181 -WQEEIESNAIEVHVSNLRKKL----GANLIKTVRNIGYVME 217


>gi|110801456|ref|YP_699593.1| two-component response regulator [Clostridium perfringens SM101]
 gi|110681957|gb|ABG85327.1| two-component response regulator [Clostridium perfringens SM101]
          Length = 233

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   A    +G S+  F+    EE L+      +  I   L+       
Sbjct: 6   ILLVDDEEKIIEVLEAYLKKEGFSV--FSCSNGEEALKIFDNNKIDLILLDLMLPDLSGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IRA S VP+I I+     +  L+ FD G DD V KP   ++++AR+ AI RR   
Sbjct: 64  EVCKVIRAKSCVPIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRRSTP 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N          G +++  D R+  V+ E+  L   E  IL  L +   K   + +I  
Sbjct: 124 CPNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIFTRDEIIE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            + G   ++ +  V++SHI  LR K+         + +   +GY  +
Sbjct: 184 LVLGDKSDSFD-RVIDSHIKNLRGKIEENTRKPKFIVTVYGVGYKFE 229


>gi|27366129|ref|NP_761657.1| Two-component system response regulator QseB [Vibrio vulnificus
           CMCP6]
 gi|27362329|gb|AAO11184.1| Two-component system response regulator QseB [Vibrio vulnificus
           CMCP6]
          Length = 219

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  I      G   E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDDPRLGEQIIESLEKTGWVPELSQDGIDALYRATSEEWDAIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y + N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFVHNADKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  I ++RKK+      + + + R LGY ++ N
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKI----APNIIKTVRGLGYQLNAN 219


>gi|313499571|gb|ADR60937.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 222

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 95/220 (43%), Gaps = 10/220 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D         G +++         +   S   D+  ++  L   G   L
Sbjct: 3   LLLVEDNVPLADELTTGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLP--GLPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++    RA     P++ ++   S    ++   +G DD ++KP H  E+  R+ A+ RR +
Sbjct: 61  DVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  + E   + +    +     G    L   E R+L Y M +  + ++K+ +   +Y
Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDVQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
              +   + NV+E H++ LR+KL    G   ++++R  GY
Sbjct: 181 DG-ETERDSNVLEVHVNHLRRKL----GRSVIETRRGQGY 215


>gi|239942982|ref|ZP_04694919.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239989442|ref|ZP_04710106.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 236

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD + + D        +G       +         + R  +  ++  L       ++
Sbjct: 5   LVVDDESYLADLVATALRYEGFETAVAGTGGAAVAQVETFRPHLIVMDVMLPD--GSGID 62

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +R +    P++ ++   + +  +     G DD V KP    E++AR+ A+ RR   
Sbjct: 63  ATRRLRGSGCLAPVVFLTARDATEDKIAGLTVGGDDYVTKPFSLEELIARIRAVLRRTAH 122

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              RA+     + +  D  +    G    L   E ++L YL+A+ G+ ++K QI   ++ 
Sbjct: 123 PAERAKVTFADLEIDDDAHEVRRHGVPVDLTPTEFKLLRYLVAHAGRVLSKRQILDHVW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D    + VV+++IS LR+K+ +      + +   +GY +
Sbjct: 182 EYDFGGSDAVVQTYISYLRRKI-DVFEPSLIQTVPRIGYVV 221


>gi|256855119|ref|ZP_05560480.1| two-component system response regulator [Enterococcus faecalis T8]
 gi|300862210|ref|ZP_07108290.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|256709632|gb|EEU24679.1| two-component system response regulator [Enterococcus faecalis T8]
 gi|300848735|gb|EFK76492.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
          Length = 231

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          + +  + +++ +   +        +  ++  +   G    +
Sbjct: 6   LIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMP--GMDGFQ 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  +++P++ ++      + +    SG DD + KP    E +ARV ++ RR    
Sbjct: 64  VLEKIRETNRLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTNF 123

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N             + +  + R    +     LP +E  IL Y   N+GK + K QIF  
Sbjct: 124 NSLHEPIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFEK 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++       ++N + + ISKLRKK+ +       + + + +GY  
Sbjct: 184 VWQEP-YVYDDNNIMAIISKLRKKIEDNPSSPTYIQTVKGIGYRF 227


>gi|16331910|ref|NP_442638.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001828|dbj|BAA10709.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 232

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWL-QSSAREDVSAIEAFLIGKGEK 59
            +L++D   +          +   ++          +L Q      ++  +  +   G  
Sbjct: 3   LLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVP--GLS 60

Query: 60  VLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            LEL + +R   S +P++ ++    +   ++  D+G DD + KP    E+LAR+ ++ RR
Sbjct: 61  GLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRR 120

Query: 119 L-KVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++   + + G   +          +     L  +E ++LEY M +  + ++  QI + 
Sbjct: 121 SPELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIKNQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ L  E+   NVV + +  LR+KL      + +++   LGY  
Sbjct: 181 LWALSAEST-SNVVAAQVRLLRRKLEEYSHGNLIETVYGLGYRF 223


>gi|262278413|ref|ZP_06056198.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258764|gb|EEY77497.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
          Length = 220

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D     +   +    DG  ++     ++          D   ++  L    GEKV
Sbjct: 3   ILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGEKV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  R+  
Sbjct: 63  LTTIRH--KQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S  +    G +++ +  +     G+   L  +E +IL  LM +    + + Q+  A+Y 
Sbjct: 121 LSQQSVLTWGNLQLDTQAKVVSCAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E  I +LRKK+    G   + + R LGY +
Sbjct: 180 AWGEEIESNAIEVFIYQLRKKI----GSSSIKTIRGLGYRM 216


>gi|16079696|ref|NP_390520.1| two-component response regulator YrkQ [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310574|ref|ZP_03592421.1| hypothetical protein Bsubs1_14456 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314898|ref|ZP_03596703.1| hypothetical protein BsubsN3_14377 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319820|ref|ZP_03601114.1| hypothetical protein BsubsJ_14293 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324099|ref|ZP_03605393.1| hypothetical protein BsubsS_14427 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1731135|sp|P54443|YRKP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yrkP
 gi|1303715|dbj|BAA12371.1| YrkP [Bacillus subtilis]
 gi|2635088|emb|CAB14584.1| two-component response regulator [YrkQ] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 231

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +    + + +  LQ    + +  +   ++  G   +
Sbjct: 5   ILVVEDDEDIGDLLEESLTRAGYEV--LRAKDGKRALQ-LVNDSLDLVILDIMMPGISGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP++ ++   S     +   +G DD + KP    E+ ARV A  RR  +
Sbjct: 62  ETCQHIRKSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTI 121

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E        G +RV  +  +   + +   L   E RIL+ LM  R K  +   I+
Sbjct: 122 YQEKKEQEETFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +++G        N V  HI KLR K+ +       + ++   GY  
Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRF 228


>gi|171912654|ref|ZP_02928124.1| DNA-binding heavy metal response regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 226

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D    ++       + G  ++     E        +  D+  ++  L    G  V
Sbjct: 3   ILIVEDERRSREFLAKGLQEAGYVVDVAGDGEEGLQATRDSAFDLIVLDVMLPVRDGWHV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R      + P++ ++   S+   +   + G DD + KP    E LARV  + RR  
Sbjct: 63  LEHLRT--EGCETPVLFLTARDSVPDRVRGLELGADDYLVKPFAWTEFLARVRTLLRRSP 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V +    + G + +               L  +E ++L  L   RG+ +++T I   ++ 
Sbjct: 121 VRTAEIIKIGDLELDLPRMKARRGRHPIDLTAKEFQLLSLLARRRGEVLSRTTICEQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + + + N V+  + +LR+K+        + ++R LGY ++
Sbjct: 181 M-NFSTDSNAVDVAMGRLRRKVDEPFENKLIHTQRGLGYILE 221


>gi|262273999|ref|ZP_06051811.1| transcriptional regulator [Grimontia hollisae CIP 101886]
 gi|262221809|gb|EEY73122.1| transcriptional regulator [Grimontia hollisae CIP 101886]
          Length = 223

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A + DG +A    +G      +     E L + A  D+  ++  L       +
Sbjct: 7   LLLVEDDANLADGLLASLEQNGYKCLYADCASKVEHLWAQA--DLVVLDRQLPE--GDSM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E          VP+I ++   S++  +   DSG  D + KP    E+LAR+    RR   
Sbjct: 63  EWLPAWNKIKDVPVIMLTAMVSVRDRVGGLDSGATDYMTKPFAEAELLARIRVHLRRPVT 122

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +++    G +R+    R          L R E  +L +L  N G+   + ++   +
Sbjct: 123 AGESTSDDIVVGKLRINLSTRSVICAESEVVLTRTEFDLLAFLAKNAGRVFTRDELLDQV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++       V++H+ +LR+KL        +++ R +GY +
Sbjct: 183 WG-YNHYPTTRTVDTHVLQLRQKLPECE----IETLRGVGYRM 220


>gi|163801134|ref|ZP_02195034.1| DNA-binding response regulator [Vibrio sp. AND4]
 gi|159175483|gb|EDP60280.1| DNA-binding response regulator [Vibrio sp. AND4]
          Length = 219

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +A   ++G   E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDEPRLGEQILATLENNGWVPELSQDGIDALYRATSEEWDAIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR  +   P++ +S   +L   ++  ++G DD + KP    E+ AR+ A  RR  
Sbjct: 61  TVLRGIRDENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLRRAS 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   + G + + +       QG+   L   E +++ Y + N  K +++T++   +Y 
Sbjct: 121 GNPSPVMQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFVHNPEKVISRTELVEHVYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|28897135|ref|NP_796740.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361433|ref|ZP_05774492.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           K5030]
 gi|260878046|ref|ZP_05890401.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AN-5034]
 gi|260896941|ref|ZP_05905437.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           Peru-466]
 gi|28805344|dbj|BAC58624.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088763|gb|EFO38458.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           Peru-466]
 gi|308089716|gb|EFO39411.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AN-5034]
 gi|308111004|gb|EFO48544.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           K5030]
          Length = 230

 Score =  214 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 101/237 (42%), Gaps = 27/237 (11%)

Query: 2   FVLIDDR---------ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            ++++D           L++ GY+     DG  ++G        +  +S   D+  ++  
Sbjct: 3   ILIVEDEHKAGEYLQKGLIESGYVVDLVHDG--VDGL-------YHATSEEYDLILLDIM 53

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L        ++   +R+     P+I ++    ++  +  F+ G +D V KP    E+LAR
Sbjct: 54  LP--KLDGWQVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLAR 111

Query: 112 VAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           V  ++R      +  S        + +    R     G+   L  +E  +LE LM   G+
Sbjct: 112 VQNVFRHHIAAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQ 171

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +++T I S ++ + +   + NV++  + +LR K+        + + R +GY ++ +
Sbjct: 172 VLSRTTIASLVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDRPLIHTVRGMGYKLEES 227


>gi|330445927|ref|ZP_08309579.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490118|dbj|GAA04076.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 225

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 96/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++       + G  ++          + +S    +  ++  L       L+
Sbjct: 4   LVIEDDITTREFIAQGLREHGFVVDEAEDGHQGLMMATSCDYQLIILDRMLPM--LDGLK 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA  +Q P++ +S   S++  +    +G DD + KP    E++AR   + +R + 
Sbjct: 62  VLAALRATENQTPILILSAMDSVEDRVAGLSAGSDDYLTKPFALAELVARAKILVKRNQA 121

Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S   +       +R+            +  L ++E  +L+YLM +    V++  +F +++
Sbjct: 122 SATISSEYIYDDLRLDIKSHRVWRGSRMLNLQQKEFLLLQYLMEHAESVVSRMSLFESVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HI+ LRKKL        + + R  GY +
Sbjct: 182 -SYHFDPKTNVIDVHIANLRKKLEEGGEPSLIHTVRGAGYVL 222


>gi|237728485|ref|ZP_04558966.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2]
 gi|226909963|gb|EEH95881.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2]
          Length = 226

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D             ++G   + F++        S  + D+  ++  L    G ++
Sbjct: 4   ILIVEDEHKTGSYLQQGLVEEGYQADLFDNGRDGLGAASKGQYDLIILDVMLPFLDGWQI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   R   +  + P++ ++   +++  +   + G DD + KP    E++ARV  + RR +
Sbjct: 64  ISALRE--SGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 121

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + V    R     G+   L  +E  +LE L+   G+ + ++ I S ++ 
Sbjct: 122 SQTATVCTIADMTVDMVRRTVTRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV++  + +LR K+ +      + + R  GY ++
Sbjct: 182 I-NFDSDTNVIDVAVRRLRSKIDDDYEPKLIHTVRGAGYILE 222


>gi|171322290|ref|ZP_02911124.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171092384|gb|EDT37742.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 224

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D A+  +  +      G  ++  ++         SA  D   ++  L   G   L + 
Sbjct: 6   VEDDAVTANEIVGELSARGFEVDWIDNGREGMMRAMSASYDAITLDRMLP--GADGLAIL 63

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
             +R      P++ +S    +   +    +G DD + KP    E+ AR+  + RR + S 
Sbjct: 64  TAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQASG 123

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R      +  PL   E R+LE++M N G+ + +T +F A++G
Sbjct: 124 VPQQTLLTVGALELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEAVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ H+ +LRKK+        + + R  GY +
Sbjct: 184 -YHFDPGTNLIDVHMGRLRKKIDPPGAVPMIQTVRGSGYML 223


>gi|225390210|ref|ZP_03759934.1| hypothetical protein CLOSTASPAR_03960 [Clostridium asparagiforme
           DSM 15981]
 gi|225043721|gb|EEG53967.1| hypothetical protein CLOSTASPAR_03960 [Clostridium asparagiforme
           DSM 15981]
          Length = 228

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 90/220 (40%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    I L   +G S+    +        +  R D++ ++  L+       
Sbjct: 4   IFLVEDDEAIARNLIRLLRAEGFSVTHALTRGKAHETLAGDRFDLALVDISLLD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+ +  +P+I ++      + +  F  G DD V KP   RE++AR+ A  R+   
Sbjct: 62  AVCTEIKENGDIPVIFLTASDDEASVVTGFHMGADDYVTKPFRPRELVARIRAALRKSGR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S    +   + V +     +  G    L   E R+L   + N    + + ++   ++   
Sbjct: 122 SGAVFKISGLSVDTASGVVKKNGGDVFLSALEYRLLLVFVNNPKMILTRGRLLDELWDAA 181

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+  +      + + R  GY +
Sbjct: 182 GEYVNDNTLTVYIKRLREKIEEDPANPQIILTVRGTGYRL 221


>gi|333008060|gb|EGK27536.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-218]
          Length = 175

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 75/172 (43%), Gaps = 6/172 (3%)

Query: 54  IGKGEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
           +  G   ++  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++A
Sbjct: 1   MLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVA 60

Query: 111 RVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R+ A+ RR+         +   + +           E   +   E ++L + M +  +  
Sbjct: 61  RIKAVMRRISPMAVEEVIKMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVY 120

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ Q+ + ++G  +  VE+  V+ HI +LRK L        V + R  GY  
Sbjct: 121 SREQLLNHVWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 171


>gi|254164047|ref|YP_003047155.1| DNA-binding transcriptional regulator BasR [Escherichia coli B str.
           REL606]
 gi|253975948|gb|ACT41619.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli B str. REL606]
          Length = 222

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+  G I     +G + +G  +    E    +    +  ++  L    E  L
Sbjct: 3   ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPD--EDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
                IR     +P++ ++   +L   +   D G DD + K     E+ AR+ A+ RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKLFALEELHARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    R   + GE   L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR    +K+G   + + R  GY +  N
Sbjct: 181 -WDNEPSTNTLEVHIHNLR----DKVGKARIRTVRGFGYMLVAN 219


>gi|298528299|ref|ZP_07015703.1| two component transcriptional regulator, winged helix family
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511951|gb|EFI35853.1| two component transcriptional regulator, winged helix family
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 232

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++         G  +  F +    + L+ +  E    I   L+      L
Sbjct: 6   ILVIEDEEDIQNLLHINLEAAGYRV--FLTDNGYDGLKIAREEQPELIILDLMLPHMDGL 63

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++       + +I ++        +  F+ G DD V KP   RE+L R+ A+ RR
Sbjct: 64  EVCRRLKKDDKLKDIIVIMVTAKSEEMDRVVGFELGADDYVVKPFSIRELLLRIKAVLRR 123

Query: 119 LKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              S++  E       +    +  + +V G    L   E ++L+ ++ N G+ + + ++ 
Sbjct: 124 EYRSDSGVERIWKHKGLEFDFEAMEFKVDGINVSLTATEMKLLQEMVQNEGRVLTRERLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + ++G ++       V++H+ +LR KL      D + + R LGY  
Sbjct: 184 NNVWG-YEFEGYARTVDTHVRRLRAKLEPY--SDLIQTARGLGYKF 226


>gi|89896507|ref|YP_519994.1| hypothetical protein DSY3761 [Desulfitobacterium hafniense Y51]
 gi|219667638|ref|YP_002458073.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335955|dbj|BAE85550.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537898|gb|ACL19637.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   + +        +G  +    S +   +L +S   D+  ++  L  K    L 
Sbjct: 8   LLIEDDRYISNFVAVSLKKEGYKVTVAESADEGLFLFTSNHPDMVLLDLGLPDK--DGLV 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R IR  S  P++ +S     +  ++  D G DD + KP H  E+LAR+ A+ RRL+  
Sbjct: 66  VIREIRGFSGTPILVVSAREQEKEKIEALDLGADDYITKPFHMGELLARIRAVKRRLQQQ 125

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S +      + V  + R   V G    L   E ++L+ ++AN+GK +    I   +
Sbjct: 126 LAPPSLSVFSCDYLTVDYEKRKVLVDGNEVHLTPMEYKLLQLMIANKGKVLTHNYIVKEV 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +G + E  +   +   ++ LR+K+   +     + ++  +GY  
Sbjct: 186 WG-YSETGDTKTIRVFMANLRRKIEKNIAKPRFILTEIGVGYRF 228


>gi|299143947|ref|ZP_07037027.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518432|gb|EFI42171.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 223

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G ++    + +  E ++    ++   I   ++       
Sbjct: 4   ILVVDDEEKIREVIKTYAEFEGHNV--VEACDGLEAIEKCKEQEFDVIVMDIMMPRLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
              + I+  + +P++ +S        L  F+ G+DD V KP   +E++AR+  I +R + 
Sbjct: 62  SSYKEIKKINDIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVKRRQR 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N   E   +++  DGR   V GE   +  +E  +L +L  N    +++ ++ S ++G
Sbjct: 122 IIENAVLEFQGLKIDLDGRVVYVDGEKVDMTPKEYDLLVFLATNENIALSRDKLLSKVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   ++  V++HI  LR  +++      + + R  GY  D
Sbjct: 182 -YDFYGDDRTVDTHIKMLRNSIKDY--RKFIVTVRGTGYKFD 220


>gi|153938900|ref|YP_001390952.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934796|gb|ABS40294.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319014|gb|ADF99391.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+++  F + +  + L      D+  I   ++      ++
Sbjct: 7   LIVDDEDEIREAIEIYLKNEGITV--FKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR +  +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVNL 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + ++   G + +    +   V G+   L   E RILE LM N+G+  +  +I+  
Sbjct: 125 GNYKETEDKVVAGTLILDKKRKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 AWKEPYYNGE-NTVAVHIRRIREKIEINPREPRYLKVVWGIGYKI 228


>gi|49081912|gb|AAT50356.1| PA1437 [synthetic construct]
          Length = 230

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A   D       + G +++  ++      L      DV  ++  L   G     
Sbjct: 4   LIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVMLP--GVDGYG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK 120
           + R +R   Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRERRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGGNH 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S+++     + +    R          L  +E  +L  L    G+ ++KT I   ++ +
Sbjct: 122 ESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVWDI 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 182 -NLDTDTNVVEVAIKRLRAKLDGPFENKLLHTIRGMGYVLE 221


>gi|148257443|ref|YP_001242028.1| OmpR family two component response transcriptional regulator
           [Bradyrhizobium sp. BTAi1]
 gi|146409616|gb|ABQ38122.1| putative two component response transcriptional regulator (OmpR
           family) [Bradyrhizobium sp. BTAi1]
          Length = 255

 Score =  214 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D   +      L  + G +     S      +    + D+  ++  L    E  +
Sbjct: 21  ILCVEDDREIAALLTELLQEHGFAPRFVASAAAMNDVLQREQVDLIMLDLMLPD--EDGM 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S VP+I ++        +   + G DD V KP + RE++AR+ A+ RR ++
Sbjct: 79  SICRRLRQVSTVPIIMVTAKGEDIDRILGLELGADDYVVKPFNPRELVARIRALLRRSQL 138

Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQI 173
                            R+    R       V   L   E  IL     N G+ +++ Q+
Sbjct: 139 HPAVIAARQAPMTFDGWRIEPATRTLFDPDRVKITLTSAEFDILLAFCRNAGRVLSREQL 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
               +G     VE   ++ HIS++R+K+      +  + + R  GY  
Sbjct: 199 IELAHGGQAGPVE-RSIDVHISRIRQKIEPGAKSWSLIKTVRLGGYVF 245


>gi|332994661|gb|AEF04716.1| transcriptional regulatory protein CpxR [Alteromonas sp. SN2]
          Length = 246

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
            ++IDD   + D         G  ++  N  +      ++    D+  ++  +       
Sbjct: 20  ILIIDDDNELTDMLATYLSSMGYQIQVSNDGQAGLAEATAGGHYDLILLDVMMP--KMDG 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ + +R     P++ ++        +   + G DD + KP +HRE++AR+ AI+RRL 
Sbjct: 78  FDVLKKLRVSHATPVLMLTARGDDYDRILGLELGADDYLPKPFNHRELVARIKAIFRRLS 137

Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++++        +       S  +  +V      L   E  IL  LM N G RV K +I 
Sbjct: 138 LTHSGGTIEQDLIVNELFLSSSSQVAKVGEVEMTLTSTEFSILRLLMLNTGSRVTKEEIS 197

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + G   +A +   ++ H+S LRKK+      + + + R +GY +
Sbjct: 198 LKVLGKSLQAFD-RSIDMHVSNLRKKIAAISNIEKIKTIRGVGYML 242


>gi|332160502|ref|YP_004297079.1| DNA-binding response regulator CreB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607030|emb|CBY28528.1| two-component response regulator CreB [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664732|gb|ADZ41376.1| DNA-binding response regulator CreB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863453|emb|CBX73572.1| transcriptional regulatory protein creB [Yersinia enterocolitica
           W22703]
          Length = 232

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  I     +G +L  F+  E      ++    ++ ++  L       
Sbjct: 4   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALANGPPALAIVDVGLPD--ING 61

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +L R I     ++P++ ++        +   + G DD + KP   RE+ ARV  + RRL
Sbjct: 62  FDLCRRILVQVPELPVVFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTVLRRL 121

Query: 120 KVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + S + A      + G   +   G       +V  L R E  +L+ L+    +  ++ Q+
Sbjct: 122 QKSQSLATSATLHQFGYFTLDEAGARVTYHQQVLWLTRYEYLLLKTLLLAPDRVFSRQQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              ++   +E+ ++  V++HI  LR KLR       P+ + R LGYS+
Sbjct: 182 MDIVWAQAEES-QDRTVDTHIKTLRSKLRMTHDEESPIRTHRGLGYSL 228


>gi|300024327|ref|YP_003756938.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526148|gb|ADJ24617.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 229

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D  +A     G ++E  ++      +        + ++  L     + L
Sbjct: 15  ILLIEDDDEIADRLVAGLARAGFTVERADNGADGYAMGLDDTYAAAILDLGLPQ--MQGL 72

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ +  RA   ++P++ +S   +    +D  ++G DD + KP H  E+ AR+ A+ RR  
Sbjct: 73  DVLKRWRASDRKLPVLILSARGTWAEKVDGLNAGADDYITKPFHIPEVAARLKALIRRAS 132

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++     G I + +        GE   L  RE ++L Y M   G+ V++ ++   +Y 
Sbjct: 133 GIASPVLSHGGISLDTTSNRVCQNGESIELTARELKMLTYFMHRIGRIVSQAELVDHLYA 192

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L D   E N +E +IS+LR+KL    G D + + R LGY +D
Sbjct: 193 LEDS-RESNTIEVYISRLRRKL----GADVITTVRGLGYRMD 229


>gi|237718181|ref|ZP_04548662.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|260174609|ref|ZP_05761021.1| two-component system response regulator [Bacteroides sp. D2]
 gi|293371072|ref|ZP_06617612.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|315922873|ref|ZP_07919113.1| two-component system response regulator [Bacteroides sp. D2]
 gi|229452602|gb|EEO58393.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|292633841|gb|EFF52390.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|313696748|gb|EFS33583.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 224

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G S+   +  +    +      D+  ++  +       L
Sbjct: 4   ILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDEPFDLLILDIIMP--KINGL 61

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL R+ R     Q+P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 62  ELCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRN 121

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K V +N      + +  + R  +       L  +E R+LEY M ++G  +++  +   ++
Sbjct: 122 KEVPSNLLTCDNLVLDCNTRKAKRGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +     N+V+ +++ LR K+        + +   LGY ++
Sbjct: 182 DK-NFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 223


>gi|163842879|ref|YP_001627283.1| two component transcriptional regulator [Brucella suis ATCC 23445]
 gi|163673602|gb|ABY37713.1| two component transcriptional regulator, winged helix family
           [Brucella suis ATCC 23445]
          Length = 229

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G  ++     E   +L  +   D   ++  L       +
Sbjct: 3   ILIIEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTELYDAVVLDIGLPQ--MDGI 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            +  R  R+   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR  
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y 
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  + +LRKK+    G D +++ R  GY +
Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKM----GVDLIETVRGRGYRM 216


>gi|37679606|ref|NP_934215.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
 gi|37198350|dbj|BAC94186.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
          Length = 219

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  I      G   E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDDPRLGEQIIESLEKTGWVPELSQDGIDALYRATSEEWDAMVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y + N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFVHNADKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  I ++RKK+      + + + R LGY ++ N
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKI----APNIIKTVRGLGYQLNAN 219


>gi|325970799|ref|YP_004246990.1| transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324026037|gb|ADY12796.1| two component transcriptional regulator, winged helix family
           [Spirochaeta sp. Buddy]
          Length = 239

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 17/229 (7%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D  ++++G        G ++ GF +L+      ++    +   +  L       
Sbjct: 11  LIYIVEDHEVIREGVRQYLELSGYAVRGFANLKSAREAFATQTPSLLIQDVMLPD--GDG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               + ++  +  P+I ++        +  F+ G DD ++KP   +E++ RV A+ RR +
Sbjct: 69  FAFVKQLKEKTDCPVIFMTARTEESDRILGFELGADDYISKPFSPKELVLRVQAVLRRYR 128

Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +     G        +          V      L   E RILEYL+ N    V+++QI
Sbjct: 129 NGSYEISDGLLYVGEHWMSFDEQDHRLVVDDGEIVLTAAEWRILEYLVQNSHHLVSRSQI 188

Query: 174 FSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  FD +VE  E VV++HI  +R KL +      +++ R  GY  
Sbjct: 189 LEE---CFDYSVESYERVVDTHIKNIRSKLGD---GPWIETVRGYGYRF 231


>gi|317132810|ref|YP_004092124.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470789|gb|ADU27393.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 225

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +  G +  F ++G       +   E       + D+  ++  L        
Sbjct: 4   ILLIEDDTDLAAGLLFTFQEEGFKTLH-AACAAEARASFKNKFDLVVLDIMLPD--GNGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IRA S VP++ ++       T+   D G DD V KP     +L+R+ A  RR   
Sbjct: 61  DLCKEIRAFSDVPILFLTSCDDEANTITALDGGGDDYVTKPFKLDVLLSRIRAHLRRRNT 120

Query: 122 SNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +A   G +R+           +   L   E R+L  L  N G  + + Q+  A++  
Sbjct: 121 QPPQAPFCGGVRLDDAQGRAFAAEQDLRLTLTEYRLLSLLTRNAGLILKRGQLLDALWDG 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             + V++N +  HI  LR+KL        + + R LGY ++ +
Sbjct: 181 KGDFVDDNTLSVHIRHLREKLSTAGSGVSIRTVRGLGYRLEEH 223


>gi|225027798|ref|ZP_03716990.1| hypothetical protein EUBHAL_02057 [Eubacterium hallii DSM 3353]
 gi|224954848|gb|EEG36057.1| hypothetical protein EUBHAL_02057 [Eubacterium hallii DSM 3353]
          Length = 232

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        D  +++     E  +   ++   D+  ++  L       + 
Sbjct: 14  LIVEDEKDLCNILKKRLQKD-YTIDICMDGEIAKDYLNTYTYDIILLDIMLP--KIDGIT 70

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           L + +R      P++ ++   S++  ++  DSG DD + KP    E+ AR+  + RR   
Sbjct: 71  LLKWLRNQKKTTPVLLLTAKSSIEERVNGLDSGADDYLIKPFAFEELQARLRVLLRRNIA 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++      + + +  +     G+   L  +E ++L+Y+M N G  +++ Q+    + 
Sbjct: 131 ADPSDILIYEDLVMDTKKKKVSRNGKEISLTTKEYKLLQYMMRNPGHVLSRDQLEQRGWD 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+++ +I  LRKK+ +      + +    GY +
Sbjct: 191 ST-FEGGSNIIDVYIRYLRKKIDSDYEKKLIHTVYGKGYCL 230


>gi|115523953|ref|YP_780864.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517900|gb|ABJ05884.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 225

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D  +  F + G   +     E    L  S   DV  I+  L  +    L
Sbjct: 3   LLIIEDDRESADYLVKAFREVGHVADLAADGEEGLSLADSGDYDVLVIDRMLPKR--DGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R   ++ P + +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SVIGTLRDKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V     + G + +           E   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 GPVEETSYKVGDLELDRLSHRVTRGSEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMV 221


>gi|315616229|gb|EFU96848.1| transcriptional regulatory protein creB [Escherichia coli 3431]
          Length = 229

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQLVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTAPSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 SSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|224541807|ref|ZP_03682346.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525275|gb|EEF94380.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM
           15897]
          Length = 231

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++    L   +G  + E  N  E  E +       +  +    +      
Sbjct: 5   IMVVDDDKDIREVIQVLLSSEGYEVIEASNGKEALELVDDDTDLIILDV----MMPEMNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   ++R  ++ P++ ++           F SG DD + KP  + E+  RV A+ RR  
Sbjct: 61  YQACVLLREKTKAPILFLTAKGQDSDKTLGFSSGGDDYLTKPFSYNELNGRVKALLRRYH 120

Query: 121 VSNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V   +          +TG I V S  R   + GE   L   E  ILEYL+ N+ + ++ +
Sbjct: 121 VYQGKGTTQEKQITYKTGNIEVNSAKRTASIDGEKLNLTDLEYNILEYLLMNKQQVISPS 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           Q+F AI+         N +  HI  LR+K+  +    + + +    GY
Sbjct: 181 QLFEAIWHEEYYYGANNTIMVHIRHLRQKIEKDPTNPEHIKTIWGKGY 228


>gi|124384287|ref|YP_001028366.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|124292307|gb|ABN01576.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
          Length = 250

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 6   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPR--MSGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 124 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLC- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 183 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 222


>gi|114706873|ref|ZP_01439773.1| two-component transcriptional regulator, winged helix family
           protein [Fulvimarina pelagi HTCC2506]
 gi|114537821|gb|EAU40945.1| two-component transcriptional regulator, winged helix family
           protein [Fulvimarina pelagi HTCC2506]
          Length = 225

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D             + G   +     E    +      D+  ++  L  +    L
Sbjct: 3   ILIIEDDRETASYLTKALKEAGHVADHAGDGETGLNMAEGRDYDLLIVDRMLPKR--DGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R   +  P + +S    +   ++   +G DD + KP    E+LAR   + RR  
Sbjct: 61  SVIADLRKSGTHTPALILSALGQVDDRVEGLKAGGDDYLTKPYAMSELLARAEVLGRRRA 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G + +     +    G+   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 121 TGEVETSYQVGDLELDRLSHEVRRAGKPIILQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+  +     + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEREFDGPLLHTVRGSGYIM 221


>gi|320527273|ref|ZP_08028458.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320132297|gb|EFW24842.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 221

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G S +  +  +  E L  + +  +  ++  L        
Sbjct: 4   ILLVEDDFAIVHSLQEYLNLEGFSSDYASGQKEAEQLLKTKQYQLLLLDVSLKD--GDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +    Q+P+I +S     +T +   + G DD + KP   +E+L+R+  + RR   
Sbjct: 62  AVC-NMAQKIQLPVIFLSASSDEETVVRGLNIGADDYITKPFRPKELLSRIKNVLRRHTG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    I+V  +    + + +   L   E ++L   + +RGK + + Q+   I+ + 
Sbjct: 121 HQTIILLDEIQVDIEKAIVKKKEKEINLSALEYKLLTLFIDHRGKLLTRDQLLDEIWNIA 180

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            + V +N +  +I +LR+K+ +       + + R LGY +D
Sbjct: 181 GDFVNDNTITVYIKRLREKIEDDPTNPKIIKTVRGLGYRMD 221


>gi|229130510|ref|ZP_04259466.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228652849|gb|EEL08731.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
          Length = 219

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 14/225 (6%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKVLEL 63
           +DD + +++        +G  +    + +  E L+      DV  ++  L        EL
Sbjct: 2   VDDESSIRNLIRMQLEMEGYEV--LAAADGREALERWNEGPDVLILDVMLPDT--DGYEL 57

Query: 64  PRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+K  
Sbjct: 58  LRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKT 117

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              VS+   E G I +    R   V G+   L  RE  + +  ++N  +   + ++   +
Sbjct: 118 EAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKV 177

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 178 WG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 219


>gi|218291330|ref|ZP_03495290.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218238776|gb|EED05990.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 221

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +         GV ++     E       S   D+  ++  L   G   ++
Sbjct: 4   LIVEDEPGLVEFLRLELELSGVEVDVAMDAETALERARSQAYDLLLVDIVLP--GMSGVD 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ AI RR + +
Sbjct: 62  LCREVRRFSNVPIMMLTARGAVADRVGGLDAGADDYLVKPFAIEELWARIRAIRRRYEAN 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G   V  D      +G+   L  RE  +L YL+ N  +  ++ ++   ++G F 
Sbjct: 122 GAPFRFGEATVHLDAHRVVYRGQEVDLTAREYDLLLYLLRNVNRTCSRQELLERVWG-FQ 180

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              + NVV+ +I  LR+KL        + + R  GY ++ 
Sbjct: 181 APGDTNVVDVYIGYLRQKLD--PERRYIKTVRGQGYRLEV 218


>gi|70729347|ref|YP_259084.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343646|gb|AAY91252.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 226

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+            + G + E        +    +    +  ++  L   G    
Sbjct: 3   LLIVEDQPKTGHYLRQGLSEAGFNAELVADGSTGQHQALTGDYALLILDVMLP--GRNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R+   ++P++ ++   ++Q  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  QILQAVRSAGLEMPVLFLTARDAVQDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   +R+    R  E   +   L  +E  +LE L+  +G+ + K+ I S ++
Sbjct: 121 AVAQETSLQLADLRLDLIRRRVERGSQRIDLTAKEFALLEMLLRRQGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRLKIDDDFPNKLIHTVRGMGYVLE 222


>gi|49475266|ref|YP_033307.1| two-component system regulatory protein [Bartonella henselae str.
           Houston-1]
 gi|49238072|emb|CAF27279.1| Two-component system regulatory protein [Bartonella henselae str.
           Houston-1]
          Length = 222

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 99/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G   +   + E   +L S+   D   ++  L    + + 
Sbjct: 3   ILIVEDDRNLNRQLAEAVKNAGYVSDSAFNGEEAYFLGSTESYDAVILDIGLPRL-DGIC 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            + +  +    +P++ ++        +   D+G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  VVEKWRKEGHLMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHLEELMARLRALIRRSTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +    G + + +        G++  L   E R+L YLM +  + V++T++   +Y  
Sbjct: 122 HATSTLCCGKVLLDTKTSRVFFDGQLIKLTSYEFRLLSYLMHHGDRIVSRTELTEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N VE  + +LRKKL    G D +++ R +GY +
Sbjct: 182 -DFDKDSNTVEVFVGRLRKKL----GMDLIETIRGMGYRV 216


>gi|282896786|ref|ZP_06304792.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Raphidiopsis brookii D9]
 gi|281198195|gb|EFA73085.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Raphidiopsis brookii D9]
          Length = 236

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 103/227 (45%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D    +   +G  ++   + +    L  +   D+  ++  L  K    L
Sbjct: 3   ILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEK--TGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R     +P++ ++   +L   +   D+G DD + KP   RE+LARV A+ RR  
Sbjct: 61  EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 120

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V    +  +   G + +  + +    QG +  L  +E ++L+YLM N  + +   QI   
Sbjct: 121 VDSYTTTGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYLMENPEQLLTHGQIMQH 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   ++  E NV+ + I  LR+K+        + +    GY   ++
Sbjct: 181 LW-KGEKPPESNVIAALIRLLRRKIELGGESTLIHTVYGKGYRFSYH 226


>gi|254292563|ref|YP_003058586.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254041094|gb|ACT57889.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 230

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   + +   A F  +G ++  ++  E      +    +++ ++  +       +
Sbjct: 4   IALVDDDENIVESLKAFFEAEGYTVRAYHDGEAALQGLAEHPPELAILDVKMP--KMDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P I ++        +  F+ G DD + KP   R +  RV A+ RR + 
Sbjct: 62  ELLRRLRQTSNLPAIFLTSKDDEIDEVVGFNIGADDFIRKPCSMRLLSERVKAVLRRSRG 121

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +    E        G + +  +      +GEV  L   E  IL+ L    G   ++ Q+ 
Sbjct: 122 AGVSEEGDKKPIVRGSLTLDPNRHACTWKGEVVRLTVTEFLILQALSTRPGYVKSRDQLM 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
            A Y      V++  ++SHI +LRKK R+    FD +++   +GY 
Sbjct: 182 DAAYD-DQVYVDDRTIDSHIKRLRKKFRDQDDEFDSIETLYGVGYR 226


>gi|312198931|ref|YP_004018992.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311230267|gb|ADP83122.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 257

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 86/234 (36%), Gaps = 19/234 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A V+         +G  +           L S  R D++ ++  +       LE
Sbjct: 14  LVVDDDAAVRQSLERSLRFEGYEVATAADGLAALELISRERPDIAVLDVMMPR--MDGLE 71

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------- 108
             R +RA    +P++ ++    L   +   D G DD + KP    E+             
Sbjct: 72  ACRQLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALSRRSAL 131

Query: 109 --LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
              A        +         G + +    R     G    L + E  +LE  + +  +
Sbjct: 132 AARAGAGRGGAAVSGGPAPLTYGGVVLDQSSRQVTRDGRELTLTKTEYELLELFLTHPRQ 191

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++++ I   ++G +D     N +E  +S LR+KL        + + R +GY +
Sbjct: 192 VLSRSMIMERVWG-YDFGPSSNSLEVFVSYLRRKLEAGGEARLLHTVRGVGYVL 244


>gi|293399972|ref|ZP_06644118.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306372|gb|EFE47615.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 226

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 101/225 (44%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +++        +G  +    +++  + ++   ++    I   ++       
Sbjct: 4   LLVVDDEAQIRNIIRKYGEFEGYEI--AEAVDGMDAIEKCRKDQFDLIIMDIMMPNLDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              + IR  +  P+I +S        +  F++G+DD V KP   +E++ RV AI +R+  
Sbjct: 62  SAVKKIREEASTPVIMLSARGEEYDRIHGFETGIDDYVVKPFSPKELMMRVNAILKRVHG 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K   +  E   +R+    R   +  +   +  +E  +L Y++ N G  + + Q+   
Sbjct: 122 EEDKKHKDVYEYEGLRIDFTARKVFINEKESEMSPKEYVLLFYMVRNEGIALTREQLIHD 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  +++HI  LRK L   +    + + R +GY  +
Sbjct: 182 VWG-YDFYGDDRTLDTHIKLLRKSLG--IYSSTIVTLRGVGYRFE 223


>gi|289549074|ref|YP_003474062.1| transcriptional regulator [Thermocrinis albus DSM 14484]
 gi|289182691|gb|ADC89935.1| two component transcriptional regulator, winged helix family
           [Thermocrinis albus DSM 14484]
          Length = 223

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 12/223 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   + +  +    ++G   EGF                +  ++  L         L
Sbjct: 7   VVEDDIDLLETVVHYLEEEGFQAEGFRDGSSFIRRIRDDVPHLVLLDVMLPDH--DGFSL 64

Query: 64  PRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R ++   A   VP++ I+        L  F+ G DD + KP   RE+LAR+ A+ RR  
Sbjct: 65  ARYLKTNPATKSVPIVFITVKGMEDDRLKGFELGADDYITKPFSLRELLARIRAVLRRSG 124

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S    + G +++ +   +     E   L   E +ILE L+ N G+ V++  +  A+ 
Sbjct: 125 HLKSEGIYQLGELQIDTQKMEVRRGKEKIYLTPTEFKILECLLENYGRPVSREYLIEAVL 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                 V +  ++ H+  LR+KL  +     + + R +GY I+
Sbjct: 185 KK---DVYDRTIDVHVKNLREKLGKEG--QAIRTVRGIGYKIE 222


>gi|28210358|ref|NP_781302.1| subtilin biosynthesis regulatory protein spaR [Clostridium tetani
           E88]
 gi|28202795|gb|AAO35239.1| subtilin biosynthesis regulatory protein spaR [Clostridium tetani
           E88]
          Length = 220

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            + IDD   +     +    +G ++        L  +++L    + D+  ++  +     
Sbjct: 4   ILAIDDEEGILTIIKSALEKEGHNVTTVSNPTCLLKDKYL----KYDLILLDVMMPE--I 57

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               L + IR     P+I ++     Q  +     G DD ++KP    E+ ARVAA  RR
Sbjct: 58  DGFSLCKEIRNLVDCPIIFLTAKTMEQDIVMGLSLGGDDYISKPFGISELRARVAAHLRR 117

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N      ++     ++     ++ P  + E  I EYL  N G+  +K +I+  +
Sbjct: 118 EHREKQNAFSISNVKFNITSKEAYYNEKLIPFTKSEYNICEYLAMNHGQVFSKDRIYEKV 177

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           YG +  +    +VE HI  +R KL+N +G +P+++   +GY 
Sbjct: 178 YGTYGNSDTTAIVE-HIKNIRNKLKN-MGINPIETVWGIGYK 217


>gi|242237780|ref|YP_002985961.1| osmolarity response regulator [Dickeya dadantii Ech703]
 gi|242129837|gb|ACS84139.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 239

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+     E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAIISFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|229588249|ref|YP_002870368.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229360115|emb|CAY46969.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 224

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   S      L    R ++  ++  L        
Sbjct: 3   ILVVEDEQKTADYLQQGLTESGYVVDCAASGIDGLHLARQHRYELVILDVNLPNT--DGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   +R      ++ ++    L   +   D G DD + KP    E+LARV  + RR + 
Sbjct: 61  EVLEQLRRDGNQRVMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRSEH 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      + +               L  +E  +L  LM   G+ + +TQI S ++ 
Sbjct: 121 IPVPDVLRVSDLELDPRRHRAYRGDRRIDLTTKEFALLHVLMRQAGEVMTRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  IS+LR K+ ++     + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSISRLRGKVDDQSEVKLIHTIRGVGYVLE 221


>gi|148270636|ref|YP_001245096.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|170289342|ref|YP_001739580.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|147736180|gb|ABQ47520.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
 gi|170176845|gb|ACB09897.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 226

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 7/218 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   ++         +G   +   SL   +   S    +V  ++      G  + E
Sbjct: 6   LIAEDDEDIRSVLKRYLETEGYECDEAESLFDLKKKLSEGTYNVLLLDLMFPD-GVAMDE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +P +  +H ++ +I IS        +   + G DD V KP + RE+LARV A+ RR+   
Sbjct: 65  IPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGKE 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + +F +       G+   +  +E  +L+ L     K  ++ +I + ++G  D
Sbjct: 125 QKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWG--D 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + V + VV+ HIS +R K+    G   + + R LGY  
Sbjct: 183 DYVSDRVVDVHISAIRSKI----GKGWIKTVRGLGYKF 216


>gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396]
 gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396]
          Length = 229

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +    +    E L+ +  +D   I   L+       
Sbjct: 5   ILIVEDERNLARFVSLELQHEGYDV--VTADNGREGLEMALEKDFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R ++      ++ ++    +   +   D G DD + KP    E+LAR+ A +RR   
Sbjct: 63  EVTRRLQQEKNTYIMMMTARDLIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +  +    +++    R      E  PL +RE  +L  L++N  + + + ++  
Sbjct: 123 EATKNAPSKASTYRDLKLDVQNRAVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|238921493|ref|YP_002935008.1| osmolarity response regulator [Edwardsiella ictaluri 93-146]
 gi|269140620|ref|YP_003297321.1| osmolarity response regulator [Edwardsiella tarda EIB202]
 gi|294638112|ref|ZP_06716369.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC
           23685]
 gi|238871062|gb|ACR70773.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
 gi|267986281|gb|ACY86110.1| osmolarity response regulator [Edwardsiella tarda EIB202]
 gi|291088744|gb|EFE21305.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC
           23685]
 gi|304560407|gb|ADM43071.1| Two-component system response regulator OmpR [Edwardsiella tarda
           FL6-60]
          Length = 239

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G  ++    R+     E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEDAVINFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|83719681|ref|YP_441198.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83653506|gb|ABC37569.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 291

 Score =  213 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 47  ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPR--MPGL 104

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 105 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 164

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 165 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLC- 223

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 224 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 263


>gi|330988080|gb|EGH86183.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 225

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVMLP--GLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  + KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILTKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|261401423|ref|ZP_05987548.1| transcriptional regulatory protein OmpR [Neisseria lactamica ATCC
           23970]
 gi|313668918|ref|YP_004049202.1| two-component system regulator [Neisseria lactamica ST-640]
 gi|269208555|gb|EEZ75010.1| transcriptional regulatory protein OmpR [Neisseria lactamica ATCC
           23970]
 gi|309379000|emb|CBX22453.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006380|emb|CBN87843.1| putative two-component system regulator [Neisseria lactamica
           020-06]
          Length = 225

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD AL+ +        +G+++   +  E       S + DV  +++ +       L+
Sbjct: 5   LLVDDDALLTELLTEYLSAEGLNVRSVSDGEAGVQEILSGQYDVVVLDSMMP--KMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + +R+ S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR +  
Sbjct: 63  VLKNVRSQSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRTQHG 122

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI--- 173
                + N      + ++   R   V+     L   E  +LE LM + G+ V+K  +   
Sbjct: 123 GEQNNAPNSISASDVVLYPAKRQASVKDTPLELTSTEFNLLEVLMRHAGQVVSKETLSVE 182

Query: 174 -FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-----RSIDVHISSIRHKLGDA---SLIQTVRGLGYLFVKN 225


>gi|206890620|ref|YP_002248594.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742558|gb|ACI21615.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 222

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       ++G +++     E   ++  +   D+  ++  L       +
Sbjct: 3   ILIVEDEKSLADIIKKGLEEEGYAVDVAYDGEEGLFMAENQPSDLIILDIMLPIV--DGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R IR    + P++ ++   ++   +   DSG DD + KP    E+LAR+ A+ RR  
Sbjct: 61  TILRKIRKAGLKTPVLMLTAKDTVMDKVSGLDSGADDYLTKPFSFEELLARIRALLRRRS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  +  E   + +     +    G+   L  +E  +LEY+  N+ K +++T++   IY 
Sbjct: 121 DIKASIIEIDDLVINMATHEVMRGGKQISLSPKEYALLEYMAINKNKVLSRTELIEHIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +   + NV++  I++LR K+  + G   + + R  GY +
Sbjct: 181 E-NSDFDSNVIDVFINRLRNKIDREFGKKLIHTVRGAGYIL 220


>gi|157961570|ref|YP_001501604.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157846570|gb|ABV87069.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 224

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++         + G  ++   + +   +  ++   DV+ ++  L  +    +
Sbjct: 3   ILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQ--DGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R    + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLIQSLRDEGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +  +G + +    +   +  +   +   E  ILEYLM +  + VAK ++   IYG
Sbjct: 121 GFVKPQITSGALELDLAAKQVSLNEQPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 181 --DKEGDPNTIEVMVSRLRKKLTKGGIENPIVTIRGQGYKFN 220


>gi|328468880|gb|EGF39840.1| DNA-binding response regulator [Vibrio parahaemolyticus 10329]
          Length = 218

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+    +      G +++             +       ++  L       L
Sbjct: 3   LLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGAGVTSALKTEAFTAVILDLTLPD--IDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R IR    ++P++ ++    ++  +   D G DD + KP    E+LAR+  + RR  
Sbjct: 61  EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G + +    +          L R E +IL  LM N G+  +K Q+  +++G
Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLHG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +DE   +N +E HI  LRKK         + + R +GY ++
Sbjct: 181 -WDEGSSDNAIEVHIHNLRKK----APNVAIKNIRGVGYILE 217


>gi|315646887|ref|ZP_07900002.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277817|gb|EFU41141.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 218

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        + V+       +    L++  RE    I   ++       
Sbjct: 5   ILIVEDDIHISNIIKMNL--NIVNYATTEVYDGLAALEAIERETFDLILLDVMIPKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   I    ++P+I ++   S+   +     G DD + KP    E+LAR+  + RR   
Sbjct: 63  ELMSKI-QRHRIPVIFLTAKNSVYDKVTGLKLGADDYMVKPFEAIELLARIETVLRRYGK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             +  +   ++V  D R+  +  +   L  +E  +L  L+ N+   +++ Q    ++G  
Sbjct: 122 EESMMQFQDVQVNMDKREVTIHSQPVELTPKEYDLLVVLLKNKNIALSREQFLDKVWGG- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   E   V+ HI  LRKKL      + + +   +GY ++
Sbjct: 181 DYFGETRTVDMHIKSLRKKL---HLQENIKTIYKIGYRLE 217


>gi|73542175|ref|YP_296695.1| heavy metal response regulator [Ralstonia eutropha JMP134]
 gi|72119588|gb|AAZ61851.1| Heavy metal response regulator [Ralstonia eutropha JMP134]
          Length = 228

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +       + G  ++   +      L  S   D+  ++  L        
Sbjct: 3   LLVVEDEAKTGEYLRQGLTEAGFVVDLAANGLDGHHLAMSEAYDLIILDVMLPDV--DGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + +RA  ++VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVQTLRAAGNRVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++ S +R + G + +    R     G    L  +E  +LE L+  RG+ + ++ I S ++
Sbjct: 121 VQASVDRVQVGDLVLDLARRRASRGGRRIVLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDDFDTKLIQTVRGMGYVLE 222


>gi|28898508|ref|NP_798113.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836151|ref|ZP_01988818.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ3810]
 gi|260365049|ref|ZP_05777620.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260879555|ref|ZP_05891910.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260894970|ref|ZP_05903466.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260901020|ref|ZP_05909415.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28806726|dbj|BAC59997.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750426|gb|EDM61171.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ3810]
 gi|308086020|gb|EFO35715.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308093370|gb|EFO43065.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308110777|gb|EFO48317.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308111621|gb|EFO49161.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
          Length = 218

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+    +      G +++             +       ++  L       L
Sbjct: 3   LLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGSGVTSALKTEAFTAVILDLTLPD--IDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R IR    ++P++ ++    ++  +   D G DD + KP    E+LAR+  + RR  
Sbjct: 61  EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G + +    +          L R E +IL  LM N G+  +K Q+  +++G
Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLHG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +DE   +N +E HI  LRKK         + + R +GY ++
Sbjct: 181 -WDEGSSDNAIEVHIHNLRKK----APNVAIKNIRGVGYILE 217


>gi|328471931|gb|EGF42808.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus 10329]
          Length = 230

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 96/228 (42%), Gaps = 9/228 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  +      +  +S   D+  ++  L        
Sbjct: 3   ILIVEDEHKAGEYLQKGLIESGYVVDLVHDGIDGLYHATSEEYDLILLDIMLP--KLDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++   +R+     P+I ++    ++  +  F+ G +D V KP    E+LARV  ++R   
Sbjct: 61  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +  S        + +    R     G+   L  +E  +LE LM   G+ +++T I S
Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVASRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++ + +   + NV++  + +LR K+        + + R +GY ++ +
Sbjct: 181 LVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLEES 227


>gi|297192015|ref|ZP_06909413.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719538|gb|EDY63446.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
          Length = 223

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A    +G +++  +         +    D+  ++  L   G    
Sbjct: 3   LLIVEDERRLARSLAAGLTAEGYAVDVVHDGLEGLHRATEGVHDLVVLDIMLP--GMNGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA    VP++ ++         +  D+G DD + KP  +  ++ARV A+ RR  
Sbjct: 61  RVCAALRAAGHDVPVLMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +     G +RV +  R     GE   L  +E  +LE+L     + V K +I   ++
Sbjct: 121 RAGGSPVLTAGDLRVDTATRRVHAGGEEVALTAKEFAVLEHLATRTDEVVGKPEILEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F    + N+VE +IS LR+KL    G D + + R  GY +
Sbjct: 181 D-FAYEGDPNIVEVYISALRRKL----GADRILTVRGAGYRL 217


>gi|170722109|ref|YP_001749797.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760112|gb|ACA73428.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 233

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + + +   +    +   +      +         + D+  ++  L   G   L
Sbjct: 4   ILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLEAFRQDKPDLVILDLMLP--GIDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R  SQ +P++ ++        +   + G DD V KP   R +LARV  + RR  
Sbjct: 62  QVCRLLRQESQSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V   R +      G +R+    R    +GE   L   E  +L  L  N G+ +++ +I  
Sbjct: 122 VHEPRLDSEQILVGGLRIDLAERLVSWRGEEVELSSGEYNLLVVLARNAGEVLSRDRILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY---SIDW 222
            + G+ +    +  V+  ISKLR+K  +  G    + +    GY    ++W
Sbjct: 182 QLRGI-EFNGTDRSVDVAISKLRRKFDDSAGEARKIKTVWGKGYLFSRVEW 231


>gi|33593530|ref|NP_881174.1| two-component response regulatory protein [Bordetella pertussis
           Tohama I]
 gi|33601058|ref|NP_888618.1| two-component response regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|33572886|emb|CAE42822.1| two-component response regulatory protein [Bordetella pertussis
           Tohama I]
 gi|33575493|emb|CAE32571.1| two-component response regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|332382938|gb|AEE67785.1| two-component response regulatory protein [Bordetella pertussis CS]
          Length = 229

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG       +G +++        +   +    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAVQPFDLLILDLGLPH--LPGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA + V P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSVLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR   V  +   L  RE  +LE L+A  G+ V+KTQ+   +  
Sbjct: 121 GGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEILLARSGRMVSKTQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKKL        + + R LGY ++
Sbjct: 180 EWGEEVSTNAIEVYVHRLRKKLEPSGVK--IITVRGLGYCLE 219


>gi|296112289|ref|YP_003626227.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295919983|gb|ADG60334.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326561799|gb|EGE12134.1| osmolarity response regulator [Moraxella catarrhalis 7169]
 gi|326562259|gb|EGE12585.1| osmolarity response regulator [Moraxella catarrhalis 103P14B1]
 gi|326563236|gb|EGE13503.1| osmolarity response regulator [Moraxella catarrhalis 46P47B1]
 gi|326564762|gb|EGE14975.1| osmolarity response regulator [Moraxella catarrhalis 12P80B1]
 gi|326568975|gb|EGE19044.1| osmolarity response regulator [Moraxella catarrhalis BC1]
 gi|326569275|gb|EGE19336.1| osmolarity response regulator [Moraxella catarrhalis BC7]
 gi|326571952|gb|EGE21957.1| osmolarity response regulator [Moraxella catarrhalis BC8]
 gi|326575462|gb|EGE25387.1| osmolarity response regulator [Moraxella catarrhalis 101P30B1]
 gi|326576449|gb|EGE26357.1| osmolarity response regulator [Moraxella catarrhalis CO72]
 gi|326577920|gb|EGE27784.1| osmolarity response regulator [Moraxella catarrhalis O35E]
          Length = 244

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        DDG  +   +  +  + L +     +  ++  L    E  +
Sbjct: 12  ILVVDDDARLRTLLQRFLEDDGYVVRVAHDGKQMDKLIAREMFSLIVLDLMLPD--EDGI 69

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA +S +P+I ++   S    +   ++G DD + KP + +E+LAR+ A+ RR  
Sbjct: 70  AICKRLRAENSSIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQN 129

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E GP  +    R  +  G V  L   E  +L+ L+ +  + + + +
Sbjct: 130 RELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDK 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  +    E  ++  +S+LR+ + +       + +   +GY  
Sbjct: 190 LMNLARGR-EWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 237


>gi|220911579|ref|YP_002486888.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858457|gb|ACL38799.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 246

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G S+           L    R DV  ++  L   G   +E
Sbjct: 25  LVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKLAKDFRPDVLVLDVMLP--GFDGVE 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IRA   +VP + ++   ++Q  +    +G DD V KP    E++ R+  + +R  V
Sbjct: 83  LLGRIRAFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVILRLHRLVQRSGV 142

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G + +  D R+    G+   L   +  +L YLM N  + ++K QI   ++
Sbjct: 143 AAMDTAELVVGDLVLNVDTREVTRAGDDVQLTATQFELLRYLMENPKRVISKAQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ + +    + + R  GY I
Sbjct: 203 D-YDFGGQANIVELYISYLRKKI-DAVHPPMIHTVRGAGYVI 242


>gi|28209933|ref|NP_780877.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28202368|gb|AAO34814.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 238

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +    G  +   ++    E      ++D   I   L+       
Sbjct: 12  ILVVEDDTDINNLLCTMLNKQGYKVT--SAYSGSEAKMCLEKQDFQLILLDLMIPAISGE 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR    +P+I IS  P     +     G DD + KP    E+LARV +  RR  V
Sbjct: 70  NLISEIRKFKTMPIIVISAKPGQDIKIKVLKLGADDFICKPFDTNEVLARVESQLRRYTV 129

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N      + +  +  +  V+GE   L  RE  ILE LM+N+ K   K  +F 
Sbjct: 130 FSSKNKEKNILTYKDLSLNKETLEVAVKGEYISLTAREFTILELLMSNQKKVFTKANLFE 189

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
             +   D   + N V  HIS +R KL       + + +   +GY I+
Sbjct: 190 HAWNE-DFFCDHNTVNVHISNIRSKLAKINPDIEYIHTVWGIGYKIN 235


>gi|27378242|ref|NP_769771.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27351389|dbj|BAC48396.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 247

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D  +  F + G   +     E    +  +   DV  ++  L  +    L
Sbjct: 24  LLIIEDDRESADYLVKAFREVGHIADHAPDGEEGLAMAENGDYDVLVVDRMLPKR--DGL 81

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R      P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 82  SLIGALRDKGNTAPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 141

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +           +   L  RE R+LEYLM + G+ V +T +   ++
Sbjct: 142 GPAEDTLYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 201

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY I
Sbjct: 202 D-YHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMI 242


>gi|229828178|ref|ZP_04454247.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
           14600]
 gi|229792772|gb|EEP28886.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
           14600]
          Length = 250

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 5/224 (2%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   ++++D   +            + +      E           D+  ++  L     
Sbjct: 20  MIHVLIVEDDPAIVKSLEDFLRGQEMQVTSAGGQEEALQKLQERPYDLVLLDITLPD--G 77

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               +   ++   Q P+I ++      + +  FD G +D + KP   RE+++R+  + R 
Sbjct: 78  SGYSVCNAVKRDYQTPVIFLTASGDENSVVTGFDLGAEDYIAKPFRPRELVSRIRNVLRH 137

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  +N      +RV  D        +   L   E R+L   + NRG+ ++++Q+  A +
Sbjct: 138 TKRQSNIERVQDLRVDLDSGRVFKGEQELSLSAMEYRLLGIFLENRGRILSRSQLLEAAW 197

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               + V +N +  +I +LR+K+  +      + + R LGY ++
Sbjct: 198 DFAGDYVNDNTLSVYIKRLREKIESDPQNPTMIRTVRGLGYRME 241


>gi|227873308|ref|ZP_03991572.1| response regulator [Oribacterium sinus F0268]
 gi|227840845|gb|EEJ51211.1| response regulator [Oribacterium sinus F0268]
          Length = 237

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + +  + L+   +E+V  I   ++  G   +
Sbjct: 4   ILVCDDDKQIVEAISIYLTGEGYQV--IKAFDGYDVLKILEKENVDLIILDVMMPGLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RTTLKIREKSSIPIIILSAKGEDTDKILGLNIGADDYITKPFNPLEMVARVKSQLRRYTQ 121

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N  E          G + +  D ++  V GE+  L   E  IL  L+ N GK  +  +
Sbjct: 122 LGNMNEQSKGEAIYSCGGLVINDDTKEVSVDGELVKLTPIEYNILLLLVRNAGKVFSIDE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+++I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 182 IYTSIWNE-EAIGADNTVAVHIRHIREKIEINSRKPKYLKVVWGVGYKIE 230


>gi|325264428|ref|ZP_08131159.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030499|gb|EGB91783.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 245

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 85/240 (35%), Gaps = 24/240 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++    L   +G  +E   +      +      D+  ++  +   G    
Sbjct: 6   IIIVDDNPEIREIIRILLQGEGYDIEEARNGMEALEMLEQGMFDLIILDIMMP--GMNGY 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S  P++ +S           F SG DD + KP  + E+++R  A+ RR ++
Sbjct: 64  QTCLEIRKQSNAPILFLSAKGQESDKTLGFSSGGDDYLVKPFSYNELVSRAKALIRRYQI 123

Query: 122 ---------------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
                                   R     + +  +      +G    L   E  +L  L
Sbjct: 124 YKGKENSETVSEQVICTGNTQEKQRLHFHDLEIDEEQEAVYAEGRQIELTDTEYAMLHLL 183

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +  R +  +  +++ A++         N +  HI  LRKK+  +      + +    GY 
Sbjct: 184 IKYRHQIFSAERLYEAVWDEPYYYGANNTIMVHIRNLRKKIEKDAKNPVLIKTIWGKGYR 243


>gi|299146067|ref|ZP_07039135.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|298516558|gb|EFI40439.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
          Length = 224

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G S+   +  +    +      D+  ++  +       L
Sbjct: 4   ILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDKPFDLLILDIIMP--KINGL 61

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL R+ R     Q+P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 62  ELCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRN 121

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K V +N      + +  + R  +       L  +E R+LEY M ++G  +++  +   ++
Sbjct: 122 KEVPSNLLTCDNLVLDCNTRKAKRGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +     N+V+ +++ LR K+        + +   LGY ++
Sbjct: 182 DK-NFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 223


>gi|295108248|emb|CBL22201.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 224

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD   +       F   G  +  + ++  +E L +  +  D+  ++  +       
Sbjct: 5   ILIVDDEKDIVSMLNQYFYKIGYVV--YTAINGKEALNAITKNPDIILLDINMPD--MNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             +   IR +   P+I ++        +  F  G DD V KP    E+ ARVAA  RR K
Sbjct: 61  FTVCEAIRNYVSCPIIFLTARVEDCDKIKGFAIGADDYVVKPFSIDELEARVAAHLRREK 120

Query: 121 VSNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             ++ A       I +    R    +       ++E  I+E+L  N+G    +  I+  +
Sbjct: 121 RHSSSAIVQFDKNIVIDYSSRTVFYKNAEINFTKKEFDIIEFLSQNKGIVFDRETIYEKV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +GL D   + +VV  HI ++R K  +      +++    GY 
Sbjct: 181 WGL-DGCGDNSVVTEHIRRIRTKFLSMSDNPYIETVWGCGYK 221


>gi|257455895|ref|ZP_05621112.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
 gi|257446641|gb|EEV21667.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
          Length = 257

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        DDG  +   +     + L       +  ++  L    E  +
Sbjct: 25  ILVVDDDARLRTLLQRFLEDDGYIVRTAHDGSQMDKLMQRELFSLIVLDLMLPN--EDGI 82

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +RA +S +P+I ++   S    +   ++G DD + KP + +E+LAR+ A+ RR  
Sbjct: 83  SICHRLRAENSDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQT 142

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E G   +    R  +  G +  L   E  +L+ L+ +  + + + +
Sbjct: 143 RELPGAPSQQMEVVEFGSWTLDLSTRTLKRDGNIVTLTTGEFSVLKALVQHPREPLTRDK 202

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  +    E  ++  +S+LR+ + +       + +   +GY  
Sbjct: 203 LMNLARGR-EWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 250


>gi|229105863|ref|ZP_04236490.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228677584|gb|EEL31834.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 223

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD + +++        +G  +    + +  E L+      DV  ++  L       
Sbjct: 3   ILVVDDESSIRNLIRMQLEMEGYEV--LVAADGREALEKWKEGPDVLILDVMLPDT--DG 58

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL R+ R     +P++ ++    +   L     G DD V KP ++ E++ RV  + RR+
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRV 118

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K      S+     G + +    R   V G+   L  RE  + +  ++N  +   + ++ 
Sbjct: 119 KKEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
             ++G F+       V+  + +LRKKL      + + +   +GY +D 
Sbjct: 179 EKVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLDC 223


>gi|26986774|ref|NP_742199.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148545300|ref|YP_001265402.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031064|ref|YP_001666295.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719233|ref|YP_001746921.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|325272092|ref|ZP_08138528.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|24981367|gb|AAN65663.1|AE016193_4 DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148509358|gb|ABQ76218.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
 gi|166857552|gb|ABY95959.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757236|gb|ACA70552.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
 gi|324102788|gb|EGC00199.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     +       + G  ++  ++      L ++    +  ++  L   G    +
Sbjct: 4   LVVEDEIKTAEYLQQGLSESGYVVDIVHNGVDALHLFNTNVYSLVLLDVNLP--GIDGWD 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           L   IR  S+V +I ++    +   L   D G DD + KP    E+LAR+ ++ RR    
Sbjct: 62  LLETIRKTSRVRIIMLTARGRINDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGDEL 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V  +  +   + + S        G    L  +E  +L  LM+  G+ + ++QI S ++ +
Sbjct: 122 VEKSSLKIADLELDSVRHRVFRGGTRIDLTTKEFALLHLLMSRTGEALTRSQIISLVWDM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NV++  I +LR K+ +      + + R +GY  +
Sbjct: 182 -NFDCDTNVIDVAIRRLRSKIDDPFETKLIHTLRGVGYVFE 221


>gi|312129843|ref|YP_003997183.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311906389|gb|ADQ16830.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 230

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         + G   E     +    L  S   D+  ++  L        
Sbjct: 7   ILIVEDDLRIAQNISKGLMEKGFDTEIAYDGKIGVKLAISNPYDLILLDLNLPE--LNGY 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R     +P+I ++     +  ++ F+ G DD + KP   RE+LAR+    +R  
Sbjct: 65  EVCSEVRKRKPSIPIIMLTALGETEDKIEGFERGADDYLVKPFDFRELLARINVFIKRNA 124

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +     N  +   + +  DG+     G    L  +E  +LEYL+ N+GK V+K +I SA
Sbjct: 125 GAGASQENTLKIANLVMDLDGKTVMRDGVKIDLTPKEFSLLEYLIKNKGKVVSKAEISSA 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   ++    NVVE +I+ LRKK+        + +K  +GY I
Sbjct: 185 LWEPNNQQ-SLNVVEVYINFLRKKIDKDFIPKLIHTKTGMGYII 227


>gi|262039182|ref|ZP_06012502.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
 gi|261746798|gb|EEY34317.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
          Length = 196

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 95/197 (48%), Gaps = 6/197 (3%)

Query: 29  FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTT 87
           F+  E  E+L+     D+  ++  +        E+ + +R   +   ++ ++   S    
Sbjct: 2   FDGEEALEYLEY-GEYDLVILDVMMP--KINGFEVVKELRSKGNNTSVLMLTARDSADDK 58

Query: 88  LDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEV 146
           +   D G DD + KP    E+ AR+ A+ RR    S+N+ E   + + +  +     G+ 
Sbjct: 59  VKGLDMGADDYLIKPFDFNELSARIRAVVRRKFGNSSNKIEVKDLVLDTTEKSVTRAGKK 118

Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206
             L  +E  ILEYL+ ++ + +++ QI   ++G ++   + N+++  I  +RKK+  + G
Sbjct: 119 IDLTGKEYEILEYLVQSKNRILSRDQIIERVWG-YEYEGDSNIIDVLIKNIRKKIDIEDG 177

Query: 207 FDPVDSKRFLGYSIDWN 223
              + +KR +GY +  +
Sbjct: 178 KQIIFTKRGMGYVVKED 194


>gi|212635060|ref|YP_002311585.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212556544|gb|ACJ28998.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 224

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++         + G  ++   + +   +  ++   DV+ ++  L  +    +
Sbjct: 3   ILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQ--DGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R +  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLIQSLRDNGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +  +G + +    +   +  E   +   E  ILEYLM +  + VAK ++   IYG
Sbjct: 121 GFVKPKITSGALEIDLAAKQVSMNEEPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 181 --DKEGDPNTIEVMVSRLRKKLTKDGLENPIATIRGQGYKFN 220


>gi|37523780|ref|NP_927157.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214785|dbj|BAC92152.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 611

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   V +            ++     E    L      D+  ++  L       + 
Sbjct: 4   LLAEDDESVAEALREFLVHQRHLVDVAGDGETAWNLIELGNYDLILLDVLLP--KLDGIS 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R    ++P++ ++   +    +   D+G DD V KP    E+ AR+ A+ RR   
Sbjct: 62  LCRRLRSKGHRMPVLLLTGLDASTDKVAGLDAGADDYVVKPCDLSELAARIRALLRRGGA 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +     E GP+R+  +  +   QG+   L  +E  +LE  +    +  ++  I   ++  
Sbjct: 122 ALPPVLEWGPLRLDPNTCEVSYQGQPLHLTPKEYNLLELFLRGGRRVYSRRAIVDHLW-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           F+E  EE+ V++H+  LR KLR      D +++   LGY +
Sbjct: 181 FEEPPEEDTVKAHVKGLRHKLRAVGAPADLIETVYGLGYRL 221



 Score = 66.1 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++DD A +     AL    G+ L      L+F   L+S  R D+  ++  +       +E
Sbjct: 492 IVDDDAPLLAALRALLAPWGLQLLTLADPLQFWRQLESF-RPDLLVLDVEMPH--LSGIE 548

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L RI+R   Q   +P++ +S +   +T    +  G DD V KP+    +  R+     R 
Sbjct: 549 LCRIVRGDPQWQWLPVLFLSAHTDEETVERAWAGGADDFVAKPVSGPNLAMRILNRLERR 608

Query: 120 K 120
           +
Sbjct: 609 R 609



 Score = 35.7 bits (82), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 12/113 (10%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAF------LIGKGE----KVLELPRIIRAHSQV 73
             L+    +E         R D+  ++        L    E     +L      R    +
Sbjct: 380 FLLDVVCGVEAAHVWMEHHRPDLVVLDLHPALAERLPAADEAARWSLLGELAARR--PPI 437

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126
           P + +SD  S +  ++    G    + KP+    ++  V  +  R +    + 
Sbjct: 438 PALVLSDRHSFEERIEATRLGSRAFLEKPVGPERVVGTVERVLERARRRTAKV 490


>gi|260575288|ref|ZP_05843288.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259022548|gb|EEW25844.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 219

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G + +   +L        +   D+  ++  L     + L
Sbjct: 3   ILLVEDDRGLGSAVRDQIAAEGHTPDWVETLADATACTQTISYDLILLDLMLPD--GRGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R +R      P+I ++    +   +D  ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DFLRGLRKRGAATPVIILTARDRITDRIDGLNAGADDYLVKPFDLAELSARIGAVARRYS 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N +     + +    R          L +RE  I E L+   G  V K QI   +Y 
Sbjct: 121 GNPNPQVHLADLTIDLAARSITSPEGPIDLSQREWIIFEVLLQRPGTIVPKGQIEERLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E ++S+LRKKL    G D +++ R +GY +
Sbjct: 180 SFDAEVESNTIEVYVSRLRKKL----GRDVIETVRGMGYRL 216


>gi|209809014|ref|YP_002264552.1| transcriptional activator protein, response regulator [Aliivibrio
           salmonicida LFI1238]
 gi|208010576|emb|CAQ80951.1| transcriptional activator protein, response regulator [Aliivibrio
           salmonicida LFI1238]
          Length = 227

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 93/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D       + G +++         +  ++ + D+  ++  L        
Sbjct: 3   LLIIEDETKAGDYLKKGLTESGYTVDLSRDGVDGLYNATTYQYDLIILDVMLP--KLNGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R   +  P+I ++    +   +  F+ G +D + KP    E+ AR+    R   
Sbjct: 61  QILQTLRNCENSTPIIMLTAKDQVDDRVKGFELGANDYLIKPFAFAELKARIENALRSQT 120

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++     N      +++           +   L  +E  +LE  M  +G+ +++T I S
Sbjct: 121 ANSHTQKVNELVLCDLQLDLLKHTATRNHDNITLTAKEFSLLELFMRKQGEVLSRTTIAS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+ + +   + NV++  + +LR K+        + + R +GY +D
Sbjct: 181 LIWDM-NFDSDTNVIDVAVKRLRAKIDKPYDTPLIHTVRGMGYKMD 225


>gi|186683435|ref|YP_001866631.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465887|gb|ACC81688.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 97/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++          G  +    + + EE L + +RE    I   ++       
Sbjct: 11  ILVVDDEASIRRILQTRLEMIGYHV--VTASDGEEALSAWSRETPDLIVLDVMMPKLDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  S VP+I ++    +   +   + G DD + KP   +E+ AR+A++ RR   
Sbjct: 69  GVCLELRKQSDVPIIMLTALADVADRITGLELGADDYMIKPFSPKELEARIASLLRRRFH 128

Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            ++             G +++  + R      +   L   E  +LE L+ + G+  ++ +
Sbjct: 129 KSDINTIIPNSLIIHVGNLKIDVNKRQVHKNEQRIRLTGIEFSLLELLVNHSGRVFSRLE 188

Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
           I   ++G +     +  VV+ HIS+L  K+  +    + + + +  GY
Sbjct: 189 ILQQLWGFVPGSHTDTRVVDVHISRLLTKVESDPNDPEFIITAKGSGY 236


>gi|325663532|ref|ZP_08151942.1| hypothetical protein HMPREF0490_02683 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087057|ref|ZP_08336131.1| hypothetical protein HMPREF0987_02434 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470431|gb|EGC73662.1| hypothetical protein HMPREF0490_02683 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330409337|gb|EGG88784.1| hypothetical protein HMPREF0987_02434 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 224

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +        DG  ++    ++     +     D+  ++  +   GE   
Sbjct: 4   ILAVDDEEEMLELVKMALERDGHQVDTEEDVKRVSA-ERCRIYDLLLLDVMMP--GEDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IRA    P++ ++        +  F  G DD + KP    E+ ARV A  RR   
Sbjct: 61  SLCGRIRAEVDCPILFLTAKTEDAALVQGFGLGADDYIKKPFSIAELRARVNAHLRREGR 120

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              RA   G +R     ++  V+ ++ PL + E  I E+L  + G+  +K Q++ A++G 
Sbjct: 121 QPVRAMARGGVRFDMQAKEAMVEEQILPLTKGEYEICEHLALHAGQVFSKEQLYEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD   +   +  HI  +R KL+ K G  P+++   +GY 
Sbjct: 180 FDAEGDPGTIAEHIKNIRAKLK-KYGKSPIETVWGMGYK 217


>gi|317494410|ref|ZP_07952824.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917660|gb|EFV39005.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 239

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEDAVISFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|228989788|ref|ZP_04149768.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228769935|gb|EEM18518.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 230

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S +       +       ++  +        
Sbjct: 4   ILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIMMP--KMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR+ S VP+I ++        +     G DD + KP H  E+LAR+ A+ RR   
Sbjct: 62  ETCNRIRSFSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVLRRSNQ 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     I          V  +   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 122 H-EQLRYKGILWDEAKHFISVYEQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           D   E+  V+SHI  LR KLR       + + +   +GY 
Sbjct: 180 DTNTEDRTVDSHIRNLRDKLRKNNFPIDEHLKTVYGVGYR 219


>gi|198277154|ref|ZP_03209685.1| hypothetical protein BACPLE_03362 [Bacteroides plebeius DSM 17135]
 gi|198269652|gb|EDY93922.1| hypothetical protein BACPLE_03362 [Bacteroides plebeius DSM 17135]
          Length = 228

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 100/226 (44%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + +        +G  ++  NS E    L+   R ++  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLEMEGYMVDTANSAEEALKLE-LPRYNLILLDVMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + +  +    +P+I I+   +   TL  F+ G DD ++KP   RE++ RV A+ RR  
Sbjct: 65  ASMMKKNKDTQNIPIIFITAKDTENDTLTGFNLGADDYISKPFSLREVIMRVKAVLRRTA 124

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   +     + V    +   +  E   L ++E  IL  L+ N+G+  ++  I + 
Sbjct: 125 GVQTQVPEQLIYKGLSVNIPKKKVTINNEEISLTKKEFEILLLLLQNQGRVFSREDILAK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++   +  V +  ++ +I++LRKK+        + ++   GY  + 
Sbjct: 185 VW-HDEVYVLDRTIDVNITRLRKKIGEYGA--CIVTRLGYGYCFEC 227


>gi|329904416|ref|ZP_08273802.1| DNA-binding heavy metal response regulator [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547984|gb|EGF32724.1| DNA-binding heavy metal response regulator [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 218

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 88/217 (40%), Gaps = 4/217 (1%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D     D       ++G  ++          L      D+  ++  L   G    E+ +
Sbjct: 2   EDEPKTGDYLRKGLQENGYVVDLARDGTTGLHLAVQEDYDLIVLDVMLP--GIDGWEVLK 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNN 124
            +R      ++ ++    +   +   + G DD + KP    E+LAR+  + RR  +   +
Sbjct: 60  KLRETKATAVLFLTSRDDVNDRVKGLELGADDYLIKPFAFVELLARIRTVLRRNPQREAD 119

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
                 + +    R     G+   L  +E  +L  L+  +G+ ++++ I S ++ + +  
Sbjct: 120 TMNVADLEIDVLKRRVIRDGQRIDLTAKEFALLHLLVRRQGEVLSRSLIASQVWDM-NFD 178

Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + NVV+  I +LR K+ +      V + R +GY  +
Sbjct: 179 SDTNVVDVAIRRLRAKVDDPFPNKLVHTIRGMGYLFE 215


>gi|317472204|ref|ZP_07931533.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900293|gb|EFV22278.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 226

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD   + D        +G ++  F +   +E L   +   D+  ++  +   G   
Sbjct: 7   ILIVDDEQSILDMLKLQLEFEGYTV--FIACNAKEALDKLSYSPDIILLDINM--AGMNG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+L   IR     P+I ++   S Q  ++   +G DD + KP    E+LAR++A  RR +
Sbjct: 63  LDLCVSIRDFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHLRREQ 122

Query: 121 VSNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S+N+ ++     + +    R   ++G    L  +E  I++ L +N G+   + +I+  I
Sbjct: 123 RSHNKTKSKFSEELVIDYSDRSLYIRGNKIELSNKEFEIIQLLSSNAGQVFDREKIYECI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+ D   +  V++ HI K+R K         + +   +GY  +
Sbjct: 183 WGI-DGNGDSVVIKEHIRKIRLKFSEFTDKAYITTVWGVGYKWE 225


>gi|260361519|ref|ZP_05774566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus K5030]
 gi|308112856|gb|EFO50396.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus K5030]
          Length = 229

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      +S   D+  I   ++      +
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAINS---DIDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R + + P++ ++        +   + G DD + KP   RE+LAR+ AI RR   
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSN 120

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          E   +R++   ++     ++  L   E  +L + + N G  + K  +  
Sbjct: 121 TQKNGKNSDCIEYQELRLYPGKQEAYCDQQLLDLTATEFALLTHFVQNPGHVLTKETLSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|229020274|ref|ZP_04177043.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
 gi|229026498|ref|ZP_04182853.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228734806|gb|EEL85446.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228741027|gb|EEL91256.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
          Length = 216

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLTAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPD--IDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LK 120
           +I+R  S VP+I ++   + ++ +  F+ GVDD + KP H+   + RV A+ RR      
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGVDDYITKPFHYTVFIKRVEAVLRRTTTKET 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++G 
Sbjct: 120 ETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 215


>gi|255308409|ref|ZP_05352580.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
          Length = 276

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L+DD   + D    +  +DG    ++ +N L+    L   A  DV  ++  L      
Sbjct: 48  ILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAIS-LCKIACPDVVILDIMLPD--ID 104

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ + IR  S   ++ +S        +    SG DD + KP   REI  RV A  RR 
Sbjct: 105 GIEVCKKIREFSYCSILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIAFRVKAQLRRQ 164

Query: 120 KVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +        +   + G I +  +G           L  RE  +L Y+  N  K + K ++
Sbjct: 165 QYQSIVPSDSEVIKIGDITIDIEGNRVYKDRNEIELTGREYHLLSYMAQNVNKIIGKERL 224

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +  ++G++  ++ +N +  HI  +R+K+ +      +  + + LGY +
Sbjct: 225 YEQVWGVY-SSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKL 271


>gi|188590423|ref|YP_001919717.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|251779363|ref|ZP_04822283.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188500704|gb|ACD53840.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|243083678|gb|EES49568.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 230

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D         G +L+ F + +  E L+    E +  I   ++      + 
Sbjct: 5   LVVDDEKEIRDAIEIYLR--GENLKVFKAADGLEALEILNNEKIHVIVLDIMMPKLDGIR 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR    +P+I +S        +   + G DD + KP +H E++ARV +  RR    
Sbjct: 63  TCLKIRETENLPIIMLSAKGEDSDKILGLNVGADDYIIKPFNHLELVARVKSQLRRYDKP 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +          + + +  +   V+GE   +   E +IL  L +N GK  +  +I+  
Sbjct: 123 LNIEDEEQILTVKDLVIDTVSKSITVRGEEIKVTATEYKILHLLASNLGKVFSIKEIYEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++        EN V  HI ++R+K+  N    + +     +GY I+
Sbjct: 183 VWDEP-FYKSENTVTVHIRRIREKIEINTKEPEYIKVVWGIGYKIE 227


>gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281400|gb|ABR89810.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 229

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 99/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++           G S++  ++   E+  ++ A +  + +   +       L
Sbjct: 3   ILIVEDDAVLAAALTRALTQAGYSVDHVDN--GEDAHRALANDIYALLLLDISLPKMDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   S++P++ ++   +L   +   D G DD + KP    E  ARV A+ RR +
Sbjct: 61  AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G +R   +        +   L  RE  + E L++ +G+ V K Q+   ++G
Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRLFG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+    N +E ++ + RKKL        + + R +GY ++
Sbjct: 181 WGDDGG-SNAIEVYVHRTRKKLEPYNIN--IRTVRGMGYLLE 219


>gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 226

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++       G  G  ++          +      D++ I+  L       L
Sbjct: 3   LLVVEDEPALRRQLADALGRAGYVVDQAADGREGLHMARDYPLDLAIIDLGLPRF--SGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +RA  +  P++ ++     Q  +   ++G DD + KP    E+LARV A+ RR  
Sbjct: 61  ELIRALRADGRTLPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALLRRAG 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++      P+ + +  +     G    L   E R+L Y+M ++G  ++KT++   +Y 
Sbjct: 121 GWADPVLRCPPLALDTRSQTAWRDGARIELTGSEFRLLHYMMLHQGAVLSKTRLEEHLYP 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E  + NV+E  I +LR+KL       P+++ R  GY +
Sbjct: 181 DAAEH-DSNVMEVFIRRLRRKLDPDGTLQPIETLRGRGYRL 220


>gi|291561248|emb|CBL40047.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 221

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +   ++D   + +  +    + G  +EGF             + D++ ++  L    E  
Sbjct: 3   LIYAVEDDKNILEIEMFALKNSGYQVEGFECARDFYKKLEEKQPDLALLDIMLPD--EDG 60

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE+   +R   +    P+I ++   +    +   D G DD + KP    E++ARV A+ R
Sbjct: 61  LEIVAKLRRRPETKKLPIIMVTAKSTEIDKVKGLDVGADDYLTKPFGVMELIARVKAVLR 120

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R    +     G I +  +     V+     L  +E  +L+ L+ N G  V +  I   +
Sbjct: 121 RTMEEDKFLTLGDIFLDDEKHMVYVKDVPCSLTFKEYELLKLLLHNAGIVVTREIILERV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G+ D   E   ++ HI  LR+KL        + + R +GY I+
Sbjct: 181 WGI-DFEGESRTLDMHIRTLRQKLGEAGS--MIRTVRNVGYMIE 221


>gi|255066588|ref|ZP_05318443.1| transcriptional regulatory protein OmpR [Neisseria sicca ATCC
           29256]
 gi|261363728|ref|ZP_05976611.1| transcriptional regulatory protein OmpR [Neisseria mucosa ATCC
           25996]
 gi|255049172|gb|EET44636.1| transcriptional regulatory protein OmpR [Neisseria sicca ATCC
           29256]
 gi|288568297|gb|EFC89857.1| transcriptional regulatory protein OmpR [Neisseria mucosa ATCC
           25996]
          Length = 225

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD AL+ +        +G+++      E       + + DV  +++ +       L+
Sbjct: 5   LLVDDDALLTELLTEYLTAEGLNVHSVPDGEAGVHEILTGQYDVVVLDSMMP--KMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R+ S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR + S
Sbjct: 63  VLKNVRSQSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQQS 122

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI--- 173
                  N      + ++   R   ++     L   E  +LE LM + G+ V+K  +   
Sbjct: 123 GEPNNAPNSISVSDVVLYPAKRQATIKDTPLELTSTEFNLLEVLMRHAGQVVSKETLSIE 182

Query: 174 -FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-----RSIDVHISSIRHKLGDA---SLIQTVRGLGYLFVKN 225


>gi|92112237|ref|YP_572165.1| two component heavy metal response transcriptional regulator
           [Chromohalobacter salexigens DSM 3043]
 gi|91795327|gb|ABE57466.1| two component heavy metal response transcriptional regulator,
           winged helix family [Chromohalobacter salexigens DSM
           3043]
          Length = 223

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D +   D      G+ G  +E          L   A  ++  ++  L   G    
Sbjct: 3   ILLVEDESKTADYLARGLGEAGYRVEVARDGLDGRHLIEEADFELIILDVMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R+IR H QVP++ ++   +++  +   + G DD + KP    E+LARV  + RR   
Sbjct: 61  ELLRLIRRHGQVPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLLRRGPL 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R +   + +    R          L  +E  +L+ L+   G+ +++T I S ++G+
Sbjct: 121 RERERFQVADLHMDVLKRRVTRGETRLALTNKEFALLQLLLEREGEVLSRTLIASEVWGM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVVE  + +LR K+ +      + ++R +GY ++
Sbjct: 181 -NFDSDTNVVEVAVRRLRAKVDDPFTRRLIHTERGMGYVLE 220


>gi|15801327|ref|NP_287344.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 EDL933]
 gi|15830856|ref|NP_309629.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. Sakai]
 gi|168749733|ref|ZP_02774755.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756469|ref|ZP_02781476.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762547|ref|ZP_02787554.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4501]
 gi|168770998|ref|ZP_02796005.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776057|ref|ZP_02801064.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782467|ref|ZP_02807474.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787605|ref|ZP_02812612.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC869]
 gi|168800458|ref|ZP_02825465.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC508]
 gi|195938762|ref|ZP_03084144.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807257|ref|ZP_03249594.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816336|ref|ZP_03257515.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822245|ref|ZP_03262564.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395806|ref|YP_002270047.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328143|ref|ZP_03444225.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792590|ref|YP_003077427.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. TW14359]
 gi|261227231|ref|ZP_05941512.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258762|ref|ZP_05951295.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O157:H7 str. FRIK966]
 gi|291282165|ref|YP_003498983.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O55:H7 str. CB9615]
 gi|81764773|sp|Q8X738|PHOP_ECO57 RecName: Full=Transcriptional regulatory protein phoP
 gi|12514781|gb|AAG55956.1|AE005328_14 transcriptional regulatory protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13361066|dbj|BAB35025.1| transcriptional regulatory protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768498|gb|EDU32342.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015943|gb|EDU54065.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999973|gb|EDU68959.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356343|gb|EDU74762.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360170|gb|EDU78589.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367118|gb|EDU85534.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372453|gb|EDU90869.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC869]
 gi|189377228|gb|EDU95644.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC508]
 gi|208727058|gb|EDZ76659.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732984|gb|EDZ81672.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737730|gb|EDZ85413.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157206|gb|ACI34639.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4115]
 gi|209772868|gb|ACI84746.1| transcriptional regulatory protein [Escherichia coli]
 gi|209772870|gb|ACI84747.1| transcriptional regulatory protein [Escherichia coli]
 gi|209772872|gb|ACI84748.1| transcriptional regulatory protein [Escherichia coli]
 gi|209772874|gb|ACI84749.1| transcriptional regulatory protein [Escherichia coli]
 gi|209772876|gb|ACI84750.1| transcriptional regulatory protein [Escherichia coli]
 gi|217318570|gb|EEC26996.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591990|gb|ACT71351.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O157:H7 str. TW14359]
 gi|290762038|gb|ADD55999.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O55:H7 str. CB9615]
 gi|320187857|gb|EFW62527.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7
           str. EC1212]
 gi|320637598|gb|EFX07398.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. G5101]
 gi|320643158|gb|EFX12359.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H- str. 493-89]
 gi|320648095|gb|EFX16771.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H- str. H 2687]
 gi|320653928|gb|EFX22002.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659408|gb|EFX26977.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664545|gb|EFX31696.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326339409|gb|EGD63221.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7
           str. 1044]
 gi|326341468|gb|EGD65259.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7
           str. 1125]
          Length = 223

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPD--EDGLS 61

Query: 63  L-PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L  R       +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LICRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221


>gi|332991876|gb|AEF01931.1| Response regulator consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Alteromonas sp. SN2]
          Length = 227

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   V       F  +G S       E       S   DV  ++  L         
Sbjct: 4   LLVEDDPKVAAHIEKGFIGEGHSCVAARDGEKGLAEALSDDVDVIVLDVMLPL--LDGFT 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R  +   P++ +S    ++  +    SG +D + KP    E+LARV  +  R + 
Sbjct: 62  ILERLRKDNVLTPVLLLSAKSQVEDKVRGLRSGANDYLTKPFAFEELLARVEGLAGRERE 121

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S ++   + G + +    R  +       L  +E ++LE L+ ++GK V ++ +   ++ 
Sbjct: 122 SGDKTLIKVGDLTLDLVNRKVQRGDTEIDLQSKEFQLLECLLRHQGKVVTRSMLLEQVWN 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR+K+        +++ R  GY I
Sbjct: 182 -YHFDPQTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRI 221


>gi|294101700|ref|YP_003553558.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
 gi|293616680|gb|ADE56834.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
          Length = 226

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 5/206 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F ++G S+E   +   EE L+ +   +   I   L+  G   L
Sbjct: 3   LLIIEDNKDLVQVLAEGFAENGFSVE--RAYTGEEGLEKAKNPECECIVLDLMLPGISGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+   +R++    P+I ++   S+   ++  + G DD + KP   RE+LARV  + RR  
Sbjct: 61  EVLERLRSNGATLPIIILTAKDSVDEKVEGLNKGADDFLVKPFDFRELLARVRTLLRRTS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ +N    G + +    R+  V   + PL RRE  ILE L+ +  +   + +I S ++ 
Sbjct: 121 ELQHNLLHCGSMTIDPVARECRVDNTILPLRRREFDILELLLRHENQVFTREKIISQVWQ 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL 205
             +     NVV+ HI  LR KLR + 
Sbjct: 181 K-EYDGTSNVVDVHIKYLRDKLREQG 205


>gi|227878532|ref|ZP_03996466.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|293380947|ref|ZP_06626980.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|227861866|gb|EEJ69451.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|290922478|gb|EFD99447.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
          Length = 225

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +++  +         + GF        +  + R D+  ++  L    E   
Sbjct: 4   IWCVEDDESIREIEMYTLEAMNFKVRGFEDGHSFFKVLDNNRPDLVILDLMLPD--EDGS 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   ++  S    +P+I  S   +    +   D G DD + KP    E+++RV A+ RR
Sbjct: 62  EILHRLKYTSATEDLPVIIASAKTAEYDKVKNLDFGADDYLTKPFGMMEMVSRVKAVLRR 121

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   ++ E   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I
Sbjct: 122 TNRKKEDKIEKDGIKILLKRHEVFENGRQVDLTLKEYGLLKLLITHPGTVFSREEIMDQI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +      VE   V+ H+  LR+KL        +++ R +GY 
Sbjct: 182 WETG-FYVETRTVDVHVRTLRQKLGEAG--KYIETLRGVGYR 220


>gi|307151759|ref|YP_003887143.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306981987|gb|ADN13868.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 226

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD+  +      +   +G  ++  ++      L      D+  ++  L  +    L
Sbjct: 3   ILLVDDQVELTQPLSLVLSREGYQVDVADNGRTGLQLALDNGYDLLILDWMLPYQ--SGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ + +R      P++ ++   +L   +   D G DD + KP   +E+LARV A+ RR  
Sbjct: 61  DICQKLRTEGKTTPVLFLTAKDTLDDRVMGLDVGADDYLVKPFQLKELLARVRALLRRSP 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              L V+  R +   + + SD +    QG    L  +E  +L Y M +  + +   QI+ 
Sbjct: 121 SFDLTVTQTRFKVADLELDSDNQVAYRQGRAISLSEKEVMLLSYFMLHPSQVLTHEQIYQ 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++    E    NV+ + +  LR+K+  +     + +    GY  
Sbjct: 181 HLW-TEKEQPNSNVLAALVRLLRRKIEAEGELPLIHTVYGKGYRF 224


>gi|150388130|ref|YP_001318179.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149947992|gb|ABR46520.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 216

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 12/223 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGE 58
           + ++I+D   +++         G   E   + + EE LQ    E  D+  ++  L  +  
Sbjct: 3   VILIIEDEDPIRELIKLNLVMAGY--ETLEACDGEEGLQYLNNEKIDLVLLDVMLPQQDG 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             L LP+I++    +P I ++    L+  +   + G DD V KP    E+LARV  + RR
Sbjct: 61  YTL-LPKILKK--NIPTIMLTAKDRLKDKVKGLEMGADDYVTKPFEAMELLARVKCVLRR 117

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     I +  D       G+   L  +E  +L  L+ N+G  +++ ++   ++
Sbjct: 118 SDKEKTKIVMDDIEICLDQWKVLKDGKEVDLTYKEFDLLRLLIENKGNVMSRDRLLELVW 177

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++       V+ HI +LR K+    G D + +   +GY ++
Sbjct: 178 G-YEFEGNTRTVDMHIQRLRNKI----GADKIKTIYKVGYRME 215


>gi|1575690|gb|AAB38789.1| response regulator [Synechococcus elongatus PCC 7942]
          Length = 223

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 5/205 (2%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLI 76
               +  S++   + +    +  +       ++  + G     LE+ + +R A    P++
Sbjct: 19  ALTQERYSVDWLTNGDEAWEMIQTYPYRALVLDWMVPGC--SGLEICQRLRQAQDSTPVL 76

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD 136
            ++    LQ  +   D+G DD + KP    E+LARV A+ RR   +        +R+   
Sbjct: 77  VLTARDGLQDLVQGLDAGADDYLVKPFRLAELLARVRALLRRSPQTQTPLLQVGVRLDPA 136

Query: 137 GRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195
               +V      PL  RE ++LE LM + G+ +++ Q+   ++   D     NVV + + 
Sbjct: 137 QATVQVDDYSPMPLTAREFQLLEALMHHPGQILSRDQLLDQLW-PMDAEPSSNVVAAQVR 195

Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220
            LR+KL        +++    GY +
Sbjct: 196 LLRRKLATYQADLLIETVYGFGYRL 220


>gi|319947435|ref|ZP_08021667.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746375|gb|EFV98636.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 224

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +    + L      S+      +        ++ DV   +  +       L 
Sbjct: 4   LVIEDEVDLNRSIVKLLKTQQYSVNAAYDGQEALDYIRVSQYDVIISDIMMPQ--LDGLG 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R H  + P++ ++   SL+  +   D+G DD + KP    E+LAR+  + RR   
Sbjct: 62  VLSYLRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRRNNR 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N  N  + G   +    +  + +G +  L  +E  +LE L+ +    +++ QI   I+ 
Sbjct: 122 ENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   E N+++  +  +RKKL N      + +KR +GY  
Sbjct: 182 -FDYVGESNIIDVLVKNIRKKLGNP---SIIQTKRGMGYVF 218


>gi|309811181|ref|ZP_07704976.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185]
 gi|308434867|gb|EFP58704.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185]
          Length = 228

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 87/218 (39%), Gaps = 4/218 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G  +               A+ D+  ++  L   G+  +E
Sbjct: 6   LIVDDDPALAEMLGIVLRGEGYHVTHCGDGTSALATFRDAKPDLVLLDVMLP--GKNGVE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP++ ++        +   ++G DD VNKP    E++ARV A  RR    
Sbjct: 64  VCRAIRAESDVPIVMLTARTDTLDVVAGLEAGADDYVNKPFKPAELVARVRARLRRGDAE 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + +          G    L   E  +L  L     +  ++  +   ++G + 
Sbjct: 124 PETVTIGDLTIDLAAHSVTRDGTPISLTPLEFDLLLALARKPWQVFSREVLLEQVWG-YR 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219
            A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 HAADTRLVNVHVQRLRAKVEKDPEKPEIVVTVRGVGYK 220


>gi|300857935|ref|YP_003782918.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685389|gb|ADK28311.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302330215|gb|ADL20409.1| Putative sensor kinase [Corynebacterium pseudotuberculosis 1002]
          Length = 225

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G +              +    D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLMLP--GMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           ++ R+IR +S VP++ ++        +   ++G DD + KP   +E++AR+ A  RR   
Sbjct: 63  DICRLIRQNSTVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELIARLRARLRRTDD 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  E   + +   G       EV  L   E  +L  L +  G+   + ++   ++G 
Sbjct: 123 APADVIEISDLAIDVPGHVVSRGREVIQLTPLEFDLLLELASKPGQVFTREELLQKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +  A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 182 YRNASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221


>gi|261250559|ref|ZP_05943134.1| two-component system response regulator OmpR [Vibrio orientalis CIP
           102891]
 gi|260939128|gb|EEX95115.1| two-component system response regulator OmpR [Vibrio orientalis CIP
           102891]
          Length = 239

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A+S +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 TELPGAPSSEESVVEFGDFRLNLGTREMFRDDEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|261377986|ref|ZP_05982559.1| transcriptional regulatory protein OmpR [Neisseria cinerea ATCC
           14685]
 gi|269145857|gb|EEZ72275.1| transcriptional regulatory protein OmpR [Neisseria cinerea ATCC
           14685]
          Length = 225

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD AL+ +        +G+++      E       S + DV  +++ +       L+
Sbjct: 5   LLVDDDALLTELLTEYLSAEGLNVHSVPDGEAGVQEILSGQYDVVVLDSMMP--KMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR + S
Sbjct: 63  VLKNVRTQSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQHS 122

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI--- 173
                  N      + ++   R   V+     L   E  +LE LM + G+ V+K  +   
Sbjct: 123 GEQNNVPNSISVSDVVLYPAKRQASVKDTPLELTSTEFNLLEVLMRHAGQVVSKETLSVE 182

Query: 174 -FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-----RSIDVHISSIRHKLGDA---SLIQTVRGLGYLFVKN 225


>gi|323497233|ref|ZP_08102253.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323317808|gb|EGA70799.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 219

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 104/222 (46%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E F+S    +  Q   + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECFHSETIADVAQYWDKADLVILDRQLPD-GDSVQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            LP   +    VP+I ++   +++  +   D+G +D + KP    E+ AR+ A  R  + 
Sbjct: 62  HLP-EWKLIKDVPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRAPEG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + + +T  + +    R+   + E   L R E  +L +L +N G+   + ++   ++
Sbjct: 121 DAQDDTKVKTEHLLIDKATREVFYKEESITLTRTEFDLLLFLASNLGRVFTRDELLDHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 G-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 217


>gi|309792219|ref|ZP_07686691.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308225760|gb|EFO79516.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 226

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD          +  + G  +      +           D+  ++  +        
Sbjct: 3   ILVADDDIPSVKLTSFVLEEAGYRVLKVYDAQSVLQAVDQHNPDLILLDVMMPKS--NGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R IR +S VP+I +S    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DICRQIRRNSDVPIIFLSGRSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRNS 120

Query: 121 ---VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +++R   G + +           G    L   E R+L YLM N G+ +  +QI S 
Sbjct: 121 DLLSTSSRLSHGDLTLDPVEHKAIFSDGRTIELTPLEFRLLYYLMKNAGRILNVSQILSK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++G +D   E N+V  +I +LR K+         V + R LGY  +
Sbjct: 181 VWG-YDYEGESNLVAVYIRRLRTKIERDPEHPTYVITVRNLGYKFE 225


>gi|300864987|ref|ZP_07109818.1| multi-component transcriptional regulator [Oscillatoria sp. PCC
           6506]
 gi|300337022|emb|CBN54968.1| multi-component transcriptional regulator [Oscillatoria sp. PCC
           6506]
          Length = 620

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 102/231 (44%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD  L+      + G +  +++  +  +    L ++   D+  ++  +       +
Sbjct: 3   ILLVDDDRLLSATLAKVLGVNHYAIDLASDGQAGLELATAIEYDLILLDVQVP--KLDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R+   + P++ ++   S    +  FD+G DD ++KP     +LAR+  + RR +
Sbjct: 61  SLCRQLRSQGYRKPILLLTANDSDADVVAGFDAGADDYISKPCATEVLLARIRTLLRRSQ 120

Query: 121 VSN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +          N    G + +  D        ++  L   E  +LE  + N  +  ++
Sbjct: 121 ALSPRDSAQNLLANTLTWGNLCLDLDSGRVTFDKQIISLTATEYNLLELFLRNPDRIFSR 180

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + I   ++GL D A  +  + +HI  +RKKL+   L  + +++   +GY +
Sbjct: 181 SAILDRLWGLED-APTDRAIITHIKDVRKKLKAGGLSEEIIETVYGMGYRL 230



 Score = 74.2 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 52/121 (42%), Gaps = 5/121 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  L+            + +      +    +  S + D+  ++  +       LE
Sbjct: 501 LIVDDDVLMLARLSDFLTPWAIEVITLTEPQQFWEVLISTKPDLVVLDIEMPF--INGLE 558

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L +++R       +P++ ++ +   ++    F +G DD ++KP+   E++ RV +   R 
Sbjct: 559 LCQVVRQDIQWENLPILVVTAHTDPESLQKAFIAGADDFISKPVLGPELVTRVISRMERS 618

Query: 120 K 120
           +
Sbjct: 619 R 619



 Score = 60.3 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++ +   A     G+ ++  ++L     L + +  DV  ++       E  L
Sbjct: 375 LLVVDDDIVLTERLKAESEAWGLRIKIASNLTNARALLALSMPDVMLLDLSFAETEEDGL 434

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
            L + +   S  +P+I  +   SL   L     G    ++KP
Sbjct: 435 TLLQEVTKRSPHLPIIVFTGRDSLADRLAVSRLGARQFLHKP 476


>gi|325681332|ref|ZP_08160858.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324106822|gb|EGC01112.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 234

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 98/227 (43%), Gaps = 13/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE--WLQSSAREDVSAIEAFLIGKGEKV 60
           ++ +D   +++  +      G  +   N  E     + ++    DV+ ++  +   G   
Sbjct: 5   LVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGAFDVALLDIMMP--GIDG 62

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + IR  +S + +I +S        +    SG DD + KP    E++ARV A+ RR+
Sbjct: 63  MQVCKKIREKNSGMGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVCRRV 122

Query: 120 KVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             S       +   +GP  +    R     G    L + E +I+EY   N+   + ++ I
Sbjct: 123 NRSAVKPEEASTITSGPFVLNLKSRTVLKNGRQIDLTQVEYQIMEYFFKNQNAALDRSSI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
            + I+G      ++ +V+ +I ++R K+ ++      + +    GY 
Sbjct: 183 LNHIWGES-YYGDDKIVDVNIRRIRMKIEDEPSNPKYILTIWGFGYK 228


>gi|322830982|ref|YP_004211009.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321166183|gb|ADW71882.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 239

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVISFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|258542012|ref|YP_003187445.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633090|dbj|BAH99065.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636147|dbj|BAI02116.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639202|dbj|BAI05164.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642256|dbj|BAI08211.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645311|dbj|BAI11259.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648366|dbj|BAI14307.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651419|dbj|BAI17353.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654410|dbj|BAI20337.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-12]
          Length = 243

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 97/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +   A     G  +   +       L+++ R +   +    +  G   L 
Sbjct: 23  LLVEDDGTIAEEIAAELTARGFKV--LHEATGNAGLEAALRLEADIMVVDRLLPGLDGLS 80

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           +   +R    ++P++ +S   ++   +    +G DD + KP    E++AR+ A+ RR   
Sbjct: 81  VIETMRQQGIRMPVLVLSALSAVDDRVTGLKAGGDDYLTKPFAIEELVARIEALLRRPDD 140

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + +   GPI +    R     G    L  RE R+LEYLM   G+ + ++ +   ++  
Sbjct: 141 TRSTKLHLGPIDMDLIERRVWRDGREIELLPREFRLLEYLMRRPGQVLTRSMLLEDVW-Q 199

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      N+V+ HI KLR+K+        ++S R  G+ +
Sbjct: 200 YRFIPRTNLVDVHIGKLRRKIDGPGEEPLIESIRGTGFRL 239


>gi|171317083|ref|ZP_02906287.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171097784|gb|EDT42608.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 225

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D  +V         D G  +E             S + DV  ++  L   G   L 
Sbjct: 5   LIIEDDEIVAHDMATHLKDRGFGVEWVPDGREGLARALSRQYDVVTLDRMLP--GIDGLT 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R+   + P++ +S    +   +    +G DD + KP    E+ ARV  + RR + 
Sbjct: 63  IVTTMRSVGVRTPVLMVSALSDVDNRVGGLRAGGDDYLTKPFDPEELTARVEVLLRRRQP 122

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++       + GP+ +    R     G    L   E R+LE++M +  + + ++ +F A+
Sbjct: 123 ASVQVATTLQVGPLELDLITRCVRRDGREIGLLPTECRVLEFMMRHAHQTITRSMMFEAV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +      NV++ H+ +LR K+        + + R  GY +
Sbjct: 183 WG-YRFDPGTNVIDVHMRRLRAKIDPTGVTPMIQTVRGSGYRL 224


>gi|284989870|ref|YP_003408424.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284063115|gb|ADB74053.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 232

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++    +    G  +    S             DV  ++  L        E
Sbjct: 7   LVVEDTEEIRELVCTVLRRAGTDVRAVASGAEALAEVRRDAPDVVVLDLGLPDA--DGTE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IRA S+  ++ ++        L     G D  + KP   RE++ARV A+ RR +  
Sbjct: 65  VCRQIRAESECYVLMLTARAEEVDLLIGLAVGADGYMAKPFSPRELVARVQALLRRPRVP 124

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V  +      + V  D R+  V G V  L R E  +L  L +  G+ + +  + 
Sbjct: 125 APRSAPVEESVLRLAELEVDEDSREVRVDGAVVDLTRTEFDLLTALASRPGRVLQRETLL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             ++   D      +VE+H+S LR+KL+      P + + R +GY +
Sbjct: 185 REVWQT-DWEGSVRLVEAHMSNLRRKLQAAGLSSPSIRTVRGVGYRL 230


>gi|257413909|ref|ZP_04744629.2| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257201844|gb|EEV00129.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 234

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +    + +  E ++   +ED   I   ++       
Sbjct: 14  ILVVDDEDKIRAIIRKYGEFEGYEI--AEAHDGMEAVEICRKEDFDLIILDVMMPELDGF 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
              R IR   ++P+I +S        +  F+ G+DD V KP   RE++ RV  +  R   
Sbjct: 72  STCREIRKFKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNNK 131

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++  +   +   + V   GR   V G+   +  +E  +L YL+ NR   + + ++ + 
Sbjct: 132 KDVRGGHEIFQAEGLVVDFTGRTVTVDGKRVEMSPKEYELLFYLVRNRNIALDREKLITE 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  +++HI  LR  L        + + R +GY  +
Sbjct: 192 VWG-YDYYGDDRTLDTHIKLLRSSLGEY--RKFLVTLRGVGYRFE 233


>gi|160879763|ref|YP_001558731.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428429|gb|ABX41992.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 227

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +    +   +  +++  +  E+      SA  D+  ++  L       L
Sbjct: 3   ILLIEDEKYMAEAVAQVLRKNNYTVDLAHDGEYGLDCALSAIYDIIILDIMLP--KMNGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R      P+I +S     +  +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  DVLKSLRREKIATPVILLSAKGETEDKVRGLDTGADDYLPKPFKTEELLARLRALGRRKG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       G I +  +  D     + + L  +E ++LE LM  +G  ++K  I   ++
Sbjct: 121 EIIPEGILSYGDIELNPNTLDVYCGKKTYKLTLKESQLLELLMNMKGMVISKNYIIEKLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD   E+N VE +IS LRKKL      + + + R LGY +
Sbjct: 181 G-FDGEAEDNHVEVYISFLRKKLAALGSTNTIQTIRGLGYML 221


>gi|62182004|ref|YP_218421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|238896872|ref|YP_002921617.1| osmolarity response regulator [Klebsiella pneumoniae NTUH-K2044]
 gi|254038572|ref|ZP_04872628.1| osmolarity response regulator [Escherichia sp. 1_1_43]
 gi|293416807|ref|ZP_06659444.1| ompR [Escherichia coli B185]
 gi|293453711|ref|ZP_06664130.1| transcriptional regulatory protein ompR [Escherichia coli B088]
 gi|62129637|gb|AAX67340.1| Transcriptional regulatory protein ompR [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|226839078|gb|EEH71101.1| osmolarity response regulator [Escherichia sp. 1_1_43]
 gi|238549199|dbj|BAH65550.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|291321837|gb|EFE61268.1| transcriptional regulatory protein ompR [Escherichia coli B088]
 gi|291431383|gb|EFF04368.1| ompR [Escherichia coli B185]
 gi|322716492|gb|EFZ08063.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 244

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 12  ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 70  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 129

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 130 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 190 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 237


>gi|319762025|ref|YP_004125962.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330826156|ref|YP_004389459.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317116586|gb|ADU99074.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329311528|gb|AEB85943.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 243

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++D        +G  +      +    +      D+  ++  +   GE  L 
Sbjct: 12  LVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLMMP--GEDGLS 69

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA S   P+I ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 70  ICRRLRAASDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N     GP       R  +  GE  PL   E  +L+ L+ +  + +++ +
Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G  +    +  ++  IS+LRK +  +      + +   +GY  
Sbjct: 190 LALLARGR-EFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|289678146|ref|ZP_06499036.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae FF5]
 gi|330895769|gb|EGH28058.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. japonica str. M301072PT]
 gi|330950912|gb|EGH51172.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           Cit 7]
          Length = 225

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLP--GLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|325983378|ref|YP_004295780.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325532897|gb|ADZ27618.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 229

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G + +   +      L  + R D   ++  L       +
Sbjct: 3   ILIIEDDLAIAANLYGFLESRGHTADAAANGVAGLHLAVTQRFDAILLDLGLPS--MNGM 60

Query: 62  ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L R +R  S    P++ ++   +L+  L  F+ G DD + KP   +E+ AR+ A+++R 
Sbjct: 61  TLCRKLRQESQIDTPILMLTARDTLEDKLAGFEQGADDYLIKPFALKEVEARLLALHKRH 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             KV+N   E   +           + +   LP +  R+L  +M+  GK  ++ ++    
Sbjct: 121 LGKVANRTLEFDKLTFDPKTLSIRFENKNVKLPPKCIRLLALMMSEPGKVFSREELEMEA 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    E  +   + SH+  LR+ L    G+DP+++   LGY +
Sbjct: 181 WEDVQETSD--TLRSHMHILRRALTKAGGYDPIETVHGLGYCL 221


>gi|262193593|ref|YP_003264802.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262076940|gb|ACY12909.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 227

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD + ++D        DG  +E     +       +   D+  ++  +       L
Sbjct: 6   ILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPE--LDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R    VP+I +S        +   + G DD V KP   RE+  RV A+ RR+  
Sbjct: 64  NLCRKLRERGDVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRRVAA 123

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +        + +     +  V  +   L   E R+L  ++   G+ + ++Q+  
Sbjct: 124 RRGADDAPPALVYERLTLDPAAHELRVDDDKIALTVTEFRVLHAILERPGRVLTRSQLID 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             Y      V E  +++HI ++R KLR   G + +++   LGY 
Sbjct: 184 RAY-EDGLHVSERTIDTHIRRIRAKLR-PYGIEAIETVHGLGYK 225


>gi|291543807|emb|CBL16916.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 263

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +      L   +G+++    +    E L++ A   VS I   ++      L 
Sbjct: 28  LVADDDRDIVRAIATLLEQEGLTV--LRAYNGLEALEAVAEHPVSLILIDVMMPKLDGLS 85

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR    +P++ +S        +     G DD + KP H +E+ ARV +  RR    
Sbjct: 86  AMMKIREQKNIPILILSAKSEESDKILGLSMGADDYIAKPYHPQELAARVKSSLRRYLHL 145

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                         G +    D R   V GE   L  +E +I+E  + N G+  +  +I+
Sbjct: 146 GAADSARMQKLIRVGGLEYDPDTRQLTVDGEPVRLTSKELKIMELFLRNPGRIFSAEEIY 205

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           S ++     AVE N V  HI  +R+K+  N    + +     +GY +
Sbjct: 206 SRVWNEDAYAVE-NTVMVHIRHIREKIEINPREPNYLKVVWGIGYQL 251


>gi|293401400|ref|ZP_06645543.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305038|gb|EFE46284.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 238

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 97/235 (41%), Gaps = 20/235 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++       + G  +    + +    L  +    ++ ++  +       + 
Sbjct: 6   LVVEDEQGIREAIAIYLKNQGYQVLLAENGKEGLDLIHTNDVHLAIVDIMMPI--MDGIT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +   +R +   P+I +S        ++  + G DD V KP    E+LARV +  RR +  
Sbjct: 64  MTMELRKNYDFPVIFLSAKSEDIDKINGLNIGADDYVTKPFGSMELLARVRSQLRRYEQI 123

Query: 122 --------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
                         + +R   G + + +  +D  V G    L  +E  IL+ LM + G+ 
Sbjct: 124 LSLQTASKQDKTEKNPHRFCVGGLELDTYTKDVYVDGRRVKLTPKEFAILQLLMESAGRV 183

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +  QI+  ++   +EA+    +  H+ KLR+K+  N      +     +GY I+
Sbjct: 184 YSAKQIYEQVW--EEEAINTETIMVHVRKLREKIEVNPRQPQYLKVVWGVGYKIE 236


>gi|150017826|ref|YP_001310080.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904291|gb|ABR35124.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 227

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V D   A    +G  +  +++    + ++   +E +  +   L+       
Sbjct: 4   ILIIEDEKSVSDVVKAYLEREGYGV--YSTENGLDGIEVFRKERIDLVILDLMLPDIDGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ +I+R  S V +  ++   +L   ++  + G D+ + KP+  RE+ ARV A++RR+  
Sbjct: 62  EVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGC 121

Query: 121 VSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              N        + +  D R  ++ GE   L   E  IL  L +N+GK   +  I    +
Sbjct: 122 KKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIERAF 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G+ +    +  ++ HI  LRKK+         + +   +GY  
Sbjct: 182 GM-EFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223


>gi|115359104|ref|YP_776242.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|170701807|ref|ZP_02892740.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171317681|ref|ZP_02906865.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172063886|ref|YP_001811537.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115284392|gb|ABI89908.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|170133286|gb|EDT01681.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171097156|gb|EDT42007.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171996403|gb|ACB67321.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 220

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L++D  L+  G       +G +++     +     L+S+A   +          G  VL
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRSTAYGLLLLDLGLPNRDGLSVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
              R  R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR   
Sbjct: 64  ASLR--RRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVNRRHAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      GP+R+        +  +   L  +E  +L  LM + G  +++ Q    +Y  
Sbjct: 122 RAQTTLAIGPLRLDPVKHLVWLNDDEVTLSPKEFVLLHELMRDPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDMIRTVRGVGYRI 216


>gi|318060148|ref|ZP_07978871.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|333026707|ref|ZP_08454771.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746559|gb|EGJ77000.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 227

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V+          G  +    S E      ++A  DV  ++  L   G   LE
Sbjct: 5   LLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWMLP--GMDGLE 62

Query: 63  LPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + R +R    + VPL+ ++        +   ++G DD V KP+  R + AR+ A+ RRL 
Sbjct: 63  VCRRLRTPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLRRLD 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      GP+ +   G     +G   PL   E R+L  L A+ G+ +++ Q+  A++
Sbjct: 123 TPGTPPPETHGPLTIDRTGLRVAHEGAPVPLAPSELRLLLTLSASPGQVLSRQQLLEAVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +  +V++ + +LR KL      D V++ R  GY  
Sbjct: 183 -EHSYHGDIRLVDACVKRLRNKL--AAAADRVETVRGFGYRF 221


>gi|262375479|ref|ZP_06068712.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262309733|gb|EEY90863.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 221

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D     D        DG  ++     +         + D   ++  L        
Sbjct: 3   ILLAEDDQSQADSIQTWLEMDGYVIDRVERGDHAILAIEQHQYDCILLDRGLPNATGD-- 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P+I I+   S+   ++  D G +D + KP    E+ ARV A  R+ +
Sbjct: 61  EILKSLRSQQQDTPVIFITAKDSIDDRVEGLDLGANDYLVKPFSLEELSARVRAQLRQKQ 120

Query: 121 VSNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N       + + +  +    +G+   L  +E +IL  LM      V + Q+  ++Y 
Sbjct: 121 QTPNHILLWQDLSLDTQAKTLTKEGQAVNLTAKEFQILYKLMQQPEHIVTREQLEESLYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE +E N +E  I +LRKK+    G   + + R LGY +
Sbjct: 181 WGDE-IESNAIEVFIYQLRKKI----GSQMIKTIRGLGYRM 216


>gi|325283532|ref|YP_004256073.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324315341|gb|ADY26456.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       D G  ++  +              D+  ++  L        
Sbjct: 6   ILIIEDDLDIANVLKLDLTDAGYEVDHADVAMTGLIKAREDNPDLIILDLGLPDF--DGG 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R +S VP+I ++   ++   +     G DD + KP H  E+LARV    R  + 
Sbjct: 64  DVVQRLRKNSAVPIIVLTARDTVDEKVRLLGLGADDYIIKPFHPDELLARVKVQLR--QR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +    R    +GE   L  +E  IL  L+   G+  ++ +I   I+   
Sbjct: 122 VTESLSMGDLTLDPQKRLATYKGEELRLSPKEFDILSLLIRQPGRVYSRQEIGQEIWQGR 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 NVV+ H++ LR KLR+  G+  + + R +GY++
Sbjct: 182 LPEG-SNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYAL 219


>gi|116252033|ref|YP_767871.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256681|emb|CAK07769.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 219

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   +          DG S++  N L+       +A  D+  ++  L       + 
Sbjct: 4   LLIEDDTALGAAIRDQIAADGHSVDWVNRLDQAGDAIVAAAYDLVLLDLMLPD--GLGIP 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             + +R    V P++ ++    +   +   ++G DD + KP    E+ AR+ ++ RR   
Sbjct: 62  FLKGLRGRGDVTPVMILTALDQVTDRIAGLNAGADDYMVKPFDLAELSARIGSVARRYAG 121

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N     GP+ +    R   + G+   L  RE  + E  +   G+ ++K Q+   +Y  
Sbjct: 122 NPNPNITLGPLAIDLAARSITLNGKAIVLTAREWVLFEAFLQRPGQLLSKAQLEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD  ++ N +E H+S+LRKKL    G   ++++R LGY +
Sbjct: 181 FDREIDSNAIEVHVSRLRKKL----GTHVIETERGLGYRL 216


>gi|83816732|ref|YP_444717.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294506480|ref|YP_003570538.1| response regulator DrrA [Salinibacter ruber M8]
 gi|83758126|gb|ABC46239.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294342808|emb|CBH23586.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 237

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 12/223 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKVL 61
           +++DD   V +       ++G ++    + + EE L+ +S + D+  ++  L   G    
Sbjct: 13  LVVDDEKDVVEVVGHFLEEEGYTVH--TAFDGEEALETASGKIDLIVLDIMLP--GVDGY 68

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +R      ++P++ +S     +  ++    G DD + KP+  + ++A V A+ RR
Sbjct: 69  EVCRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRR 128

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             V  ++  E   ++++ D    E+ GE   L   E  +L YL+ +  K   + Q+   I
Sbjct: 129 SGVEESSILEVDGLKIYEDEYRAELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQLLETI 188

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      V E  V++HI  LR+KL +      + + R +GY  
Sbjct: 189 W-KDAMMVTERTVDAHIKNLREKLGDF--AKHIQTVRGVGYRF 228


>gi|29346892|ref|NP_810395.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298386461|ref|ZP_06996017.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|29338790|gb|AAO76589.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298260838|gb|EFI03706.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 229

 Score =  213 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 102/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  ++  NS E    +  S+   +          G K+ 
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMDISSYHLILLDVMMGEISGFKMA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR   
Sbjct: 66  NMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTAT 125

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +  R     + +    +   +  E   L ++E  IL  L+ N+G+  ++  I + 
Sbjct: 126 METEKAPERLTYQSLVIDITKKKVSIDDEEVQLTKKEFEILLLLVQNKGRVFSREDILAR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 186 IW-SDEVYVLDRTIDVNITRLRKKIGEYG--KCIVTRLGYGYCFE 227


>gi|281412946|ref|YP_003347025.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281374049|gb|ADA67611.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 222

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 7/218 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   ++         +G   +   SL   +   S    +V  ++      G  + E
Sbjct: 2   LIAEDDEDIRSVLKRYLETEGYECDEAESLFDLKKKLSEGTYNVLLLDLMFPD-GVAMDE 60

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +P +  +H ++ +I IS        +   + G DD V KP + RE+LARV A+ RR+   
Sbjct: 61  IPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGKE 120

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + +F +       G+   +  +E  +L+ L     K  ++ +I + ++G  D
Sbjct: 121 QKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWG--D 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + V + VV+ HIS +R K+    G   + + R LGY  
Sbjct: 179 DYVSDRVVDVHISAIRSKI----GKGWIKTVRGLGYKF 212


>gi|27364655|ref|NP_760183.1| Copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus CMCP6]
 gi|37681297|ref|NP_935906.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016]
 gi|320155050|ref|YP_004187429.1| copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus MO6-24/O]
 gi|27360800|gb|AAO09710.1| Copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus CMCP6]
 gi|37200048|dbj|BAC95877.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016]
 gi|319930362|gb|ADV85226.1| copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus MO6-24/O]
          Length = 227

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
            +LIDD   +      +   +G ++   N  + E+ LQ+ SA  D+  ++  +       
Sbjct: 4   ILLIDDDTELTSLLTEVLSYEGFNVTEAN--DGEQGLQALSAEIDLILLDVMMP--KLNG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  + +R     P++ ++        +   + G DD + KP   RE+LAR+ AI RR  
Sbjct: 60  IDTLKKLREQWDTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIKAILRRTS 119

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S++  E   ++++    +    G    L   E  +L + M N G  + K  +  
Sbjct: 120 ATKAPKSSDCIEYQDLKIYPGRLEAYCAGTQLDLTATEFALLSHFMQNPGSTLTKETLSL 179

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
            + G    A +   ++ H+S LRKKL     G   + + R  GY
Sbjct: 180 DVLGKRLAAFD-RAIDMHVSNLRKKLPERADGKSRIKTLRGRGY 222


>gi|317052735|ref|YP_004113851.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316947819|gb|ADU67295.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 224

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LI+D+  +++        DG   +E  ++      +      D+  ++  L   G   
Sbjct: 4   ILLIEDQEELRELVEYNLVRDGQFQVESVDNANDALMMLEDIEVDLILLDLMLP--GLSG 61

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LE  RI++     S++P+I IS     Q  +     G DD + KP   + + A+V A+ R
Sbjct: 62  LEFLRILKNSVERSEIPVIIISAKSGEQDIVTGLSLGADDYITKPFSMKVLKAKVDAVLR 121

Query: 118 RLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R    +NR    G I +  +     V G    L  +E  +L   +    K   + Q+ S+
Sbjct: 122 RALHHDNRTVAYGSISIDMETHKAYVDGNEVVLTMKEFELLHLFLKRPKKVFHRNQLLSS 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+G +D  V    V++HIS LRKKL +K     + S   +GY +D
Sbjct: 182 IWG-YDSEVYTRTVDAHISSLRKKLGDKG--KMIRSIPKVGYGMD 223


>gi|218282853|ref|ZP_03489006.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989]
 gi|218216309|gb|EEC89847.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989]
          Length = 233

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G ++    +   +E L+     D+      ++      +
Sbjct: 5   ILVVEDEQGIREAIGIYMKNQGYNV--ILAANGKEGLEKIETNDIHLAIVDIMMPVMDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +    R H   P++ +S        +   + G DD + KP    E++ARV +  RR + 
Sbjct: 63  SMVMEARKHHDFPILFLSAKSEDIDKITGLNIGADDYITKPFQSMELVARVRSHLRRYEQ 122

Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +    G + + +  +   +      L  +E  IL+ L+++ G+  +  Q
Sbjct: 123 ILNLKNETKNEDEYMIGDLVLNNTTKRVTLNSRDIKLTPKEFDILKLLISHPGQVFSSQQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           I+  ++   +EA+    +  HI KLR+K+         +      GY ++
Sbjct: 183 IYELVWK--EEAINTETIMVHIRKLREKIEANPKKPIYIKVVWGQGYKME 230


>gi|146283738|ref|YP_001173891.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501]
 gi|145571943|gb|ABP81049.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501]
          Length = 243

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G +++  +       L      D+  ++  L        
Sbjct: 22  ILVVEDEIKAAEYLQQGLIECGYTVDCVSDGLDGFHLALQNDYDIVLLDVNLPT--MDGW 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+  +IR   Q  +I ++    L+  +   +SG DD + KP    E+LAR+  + RR + 
Sbjct: 80  EVLELIRRRKQTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLLRRGEA 139

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      + +          G+   L  +E  +L  LM   G+ + +T+I + ++ 
Sbjct: 140 VALPSNLRVADLELDPGRHRAYRSGQRIDLTSKEFALLHLLMRRTGEVLTRTEITALVWD 199

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVV+  I +LR K+    G   + + R +GY ++
Sbjct: 200 I-NFDCDTNVVDVAIRRLRMKVDEPFGDRLIHTIRGVGYVLE 240


>gi|254975553|ref|ZP_05272025.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092941|ref|ZP_05322419.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314682|ref|ZP_05356265.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517356|ref|ZP_05385032.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650463|ref|ZP_05397365.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683573|ref|YP_003214858.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687233|ref|YP_003218367.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520433|ref|ZP_07406780.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260209736|emb|CBA63511.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213250|emb|CBE04771.1| two-component response regulator [Clostridium difficile R20291]
          Length = 223

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +G    F +DG ++  F +   +E L     +++  I            
Sbjct: 3   LLIIEDDINLNEGLFYAFENDGFNV--FKAYTKQEGLNIFNSKNIDFIILDCNLPDGDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ +IIR  S +P+I ++   S    +   + G+DD + KP     + ARV    R+ K 
Sbjct: 61  DVCQIIREKSDIPIIMLTARDSEIDEVKGLEIGLDDYITKPFSLSVLKARVKVAIRK-KS 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N    +  I++               L   E ++L YL+ N+G+ + K QI   I+   
Sbjct: 120 NNKVIYSNGIKLDQKLLKVYKNKACLELSSVEYKLLSYLIENKGQILLKEQILHHIWDSE 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  V++N+V  +I +LR K+ +       + +   +GY   WN
Sbjct: 180 ENYVDDNIVSVNIRRLRVKVEDDPSNPKYIKTAYGMGYL--WN 220


>gi|330863190|emb|CBX73317.1| signal transduction histidine-protein kinase baeS [Yersinia
           enterocolitica W22703]
          Length = 670

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 4/195 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +      G S +   +          +   +  ++  L   G   + 
Sbjct: 476 LIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLMLP--GSDGIS 533

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S VP++ ++        L   + G DD + KP   RE++ARV  I RR +  
Sbjct: 534 ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 593

Query: 123 NNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             + +E+ P+ +         QG +  L   E R+L+ L    G   ++ Q+ + +Y  +
Sbjct: 594 REQPSESAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 653

Query: 182 DEAVEENVVESHISK 196
              V +  ++SHI K
Sbjct: 654 -RVVTDRTIDSHIKK 667


>gi|330721725|gb|EGG99721.1| two component transcriptional regulator2C winged helix family
           [gamma proteobacterium IMCC2047]
          Length = 219

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         +   ++    + E    +  + + D+  ++  L       +
Sbjct: 3   ILLVEDDYPLAKALQQALQEQQHTVNAVGTGEAALHIIDTEKPDIVILDLGLPD--IDGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +  R  HS +P++ ++    L   +   DSG DD + KP    E+ AR+  + RRL 
Sbjct: 61  DVLKKARKKHSDLPILLLTARAELDDRITGLDSGADDYLAKPFEMAELFARLRVLERRLG 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++      + +  +    +  G    L R+E  +L+ LM N G+   ++ +   +Y 
Sbjct: 121 TAHSSEIVIHNVCLDCNNNSVKFNGTELELSRKEYMLLKSLMENAGRIQTRSTLERRLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +DE V  N +E H+  LRKKL    G + + + R +GY I+
Sbjct: 180 SWDEEVASNALEVHVHHLRKKL----GSNFIKTVRGVGYKIE 217


>gi|308069282|ref|YP_003870887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305858561|gb|ADM70349.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 232

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 98/225 (43%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   ++   +     +G  + E     E    L +    D++ ++  +   G    
Sbjct: 5   LIMEDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVP--GMDGF 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ + +I ++     Q  +     G DD V+KP    E++AR+ ++ RR+ 
Sbjct: 63  EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVN 122

Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V    A     ++GP  +    +  +  G++  L   E  ++++ +      +++  +  
Sbjct: 123 VHRETAAKVSFQSGPFTLDLIAKQFKKNGQLIELTPTEFSLIQFFLEKENTPLSRDVLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            ++G  +   +  +V+ +I +LR+K+  N      + +    GY 
Sbjct: 183 HVWGK-EYMGDPKIVDVNIRRLRQKIENNPSEPAFLQTVWGHGYK 226


>gi|157158943|ref|YP_001465919.1| DNA-binding response regulator CreB [Escherichia coli E24377A]
 gi|157080973|gb|ABV20681.1| transcriptional regulatory protein CreB [Escherichia coli E24377A]
          Length = 229

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQLVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 SSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRVKLRAINPDLSPINTHRGMGYSL 226


>gi|269216894|ref|ZP_06160748.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
 gi|269129701|gb|EEZ60785.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
          Length = 244

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 21/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++        +G  +    +++  E L +     +  +   ++       
Sbjct: 11  ILIADDDQDIRELLRLYLESEGYRVR--EAVDGAEALGAVKAGGIDLVLLDIMMPRIDGY 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R  S +P+I +S        +   D G DD + KP +  E LARV +  RR   
Sbjct: 69  QVLRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYG 128

Query: 122 SNN-----------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
                                     + +  D        E   L   E R+L   M++ 
Sbjct: 129 MPAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHP 188

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G+   K QIF   +G  +     N V   ISKLR KL +  G   + + R LGY ++
Sbjct: 189 GRVFTKQQIFEEGWGE-EYVASGNNVMVGISKLRAKLSDDPGA-YIATVRGLGYRME 243


>gi|182419109|ref|ZP_02950363.1| two-component response regulator [Clostridium butyricum 5521]
 gi|237669289|ref|ZP_04529271.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377064|gb|EDT74634.1| two-component response regulator [Clostridium butyricum 5521]
 gi|237655176|gb|EEP52734.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 233

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V    I     +G  +E   +L+    + + +  D+  ++  L        
Sbjct: 4   ILLVEDDRAVALAVIYSLKKEGFEVEHATNLKSARSILNDS-IDLILLDVMLPD--GDGY 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   IR A + +P+I ++        +   D G DD V+KP+  RE+++R+ A+ RR  
Sbjct: 61  ELCSEIRTAQNNIPIIFMTACDEENNVVIGLDLGADDYVSKPVKIRELVSRINAVLRRKG 120

Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             NN        ++  + +          GE   L   E +++  LM N    + +  + 
Sbjct: 121 KDNNINSVKEIFKSENLELDKGAHIVRKNGEEISLTLNEYKLMLLLMENSPNVLTRDMML 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
             ++ +    ++ N +  +I +LR+K+ + +     + + R +GY 
Sbjct: 181 EKVWDIEGNFIDANALSVNIKRLREKIEDDIKSPKFIITIRGVGYK 226


>gi|153933899|ref|YP_001383953.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937109|ref|YP_001387498.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226948941|ref|YP_002804032.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|152929943|gb|ABS35443.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933023|gb|ABS38522.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226842658|gb|ACO85324.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+++  F + +  + L      D+  I   ++      ++
Sbjct: 7   LIVDDEDEIREAIEIYLKNEGITV--FKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR +  +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVNL 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + ++   G + +    +   V G+   L   E RILE LM N+G+  +  +I+  
Sbjct: 125 GNYKETEDKVVAGALILDKKTKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 AWKEPYYNGE-NTVAVHIRRIREKIEINSREPRYLKVVWGIGYKI 228


>gi|153003748|ref|YP_001378073.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027321|gb|ABS25089.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 234

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D   + D         G+++              S R +   ++  L   G+  
Sbjct: 8   LVLLVEDDRRLADLTREYLEGHGLAVVHVADGRRGLEEALSGRYEAVLLDLMLP--GKDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           LE+ R +RA S VP+I ++        +   + G DD + KP   RE+LAR+ AI R   
Sbjct: 66  LEVCRELRARSDVPVIVLTARGEEADRVLGLELGADDYLAKPFSPRELLARIRAIVRRAR 125

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            R   + +    G + V    R   + G    L   E  +L+ L    G+ +++ Q+   
Sbjct: 126 GRAGPAASTLRVGGLVVDPGARRVTLDGREIALTGYEFALLDALARRAGRVLSREQLMEL 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             G  +EA +   ++ H+S+LR+KL +       + + R  GY +
Sbjct: 186 AGGSAEEAFD-RSIDVHVSRLRQKLGDDPKRPRLIKTVRGAGYLL 229


>gi|77361118|ref|YP_340693.1| transcriptional regulatory protein in two-component regulatory
           system with baeS [Pseudoalteromonas haloplanktis TAC125]
 gi|76876029|emb|CAI87251.1| Transcriptional regulatory protein in two-component regulatory
           system with baeS [Pseudoalteromonas haloplanktis TAC125]
          Length = 226

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +            + +  +  E   WL+   +  V  ++  L   G+  
Sbjct: 5   ILIVEDEVKLANLISDFLTSHHYITHQIHHGNEVLPWLE-INKPSVILLDIMLP--GQSG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + IR  S VP+I +S        L   + G DD + KP  + E++ARV AI RRL 
Sbjct: 62  IELCKAIRQFSNVPIIMVSAKVEEIDRLLGLELGADDYICKPFSYAELVARVKAILRRLN 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N   +T  +++       + +     L   E ++ + L  N  +  ++  +   +Y  
Sbjct: 122 --NVEPKTNVMQLDESTYSVKYKAVSIELTNVEFQLFKPLFNNPNRIYSRDSLMDTMY-A 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
               V +  ++SHI KLRKKL      D  + S   +GY  
Sbjct: 179 DQRIVSQRTIDSHIKKLRKKLDELTKTDSVIQSVYGVGYRF 219


>gi|145220641|ref|YP_001131319.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442411|ref|YP_004075290.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145213127|gb|ABP42531.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315260714|gb|ADT97455.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 236

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 13/208 (6%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA--HSQVPL 75
               DG+ +   +       L SS R DV+ ++  +   G   + L R +R   H  VP+
Sbjct: 21  YLERDGLEVSTAHDGNEALRLLSSQRIDVAVLDVMMP--GPDGMALCRRLRQNGHYSVPV 78

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR----AETGPI 131
           I ++        +   ++G DD + KP   RE+  RV ++ RR   S         +G +
Sbjct: 79  ILLTALGEEDDRIAGLEAGADDYLTKPFSPRELALRVRSVLRRSPASIAAHPVDITSGDL 138

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V +  R   V G    L  RE  +L + + + G    +  +   ++    +  + + V 
Sbjct: 139 TVSTASRSATVGGRTVSLTNREFDLLLFFLTHAGTVYTREDLLKEVWHW--DFGDLSTVT 196

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            H+ +LR KL ++     V +    GY 
Sbjct: 197 VHVKRLRSKLGDRH---RVQTVWGRGYM 221


>gi|319639234|ref|ZP_07993985.1| two-component system regulator [Neisseria mucosa C102]
 gi|317399418|gb|EFV80088.1| two-component system regulator [Neisseria mucosa C102]
          Length = 225

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD AL+ +        +G+++      E       + + DV  +++ +       L+
Sbjct: 5   LLVDDDALLTELLTEYLTAEGLNVHSVPDGEAGVQEILTGQYDVVVLDSMMP--KMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR + S
Sbjct: 63  VLKNVRTQSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQHS 122

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI--- 173
           N      N      + ++   R   ++     L   E  +LE LM + G+ V+K  +   
Sbjct: 123 NEQNNAPNSISVSDVVLYPAKRQASIKDTPLELTSTEFNLLEVLMRHAGQVVSKETLSIE 182

Query: 174 -FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-----RSIDVHISSIRHKLGDA---SLIQTVRGLGYLFVKN 225


>gi|227823552|ref|YP_002827525.1| two component transcriptional regulator [Sinorhizobium fredii
           NGR234]
 gi|227342554|gb|ACP26772.1| two component transcriptional regulator [Sinorhizobium fredii
           NGR234]
          Length = 232

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +          +G +++   +             D   ++  L        E
Sbjct: 6   LIVDDDTRLSAMLADYLSGNGYTVKTAATATAGLTDLGRRAPDAVILDVMLPD--LDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IRA S VP++ ++        +   + G DD + KP + RE+LAR+ AI RR   S
Sbjct: 64  TCRRIRAVSDVPILMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRRRNGS 123

Query: 123 NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + T   G + +    R   + G V  L   +  +L  L  N G+ +++ Q+  A+ G
Sbjct: 124 ATVSRTFRFGRLEIDPGSRSVRIDGRVCALTSYQFDLLVALAENAGRTLSREQLMDAVKG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              EA +   ++ H+S++R  +  +      + + R  GY  
Sbjct: 184 EELEAFD-RSIDVHVSRIRAAIESDPRHPRRIITVRGAGYVF 224


>gi|237806797|ref|YP_002891237.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237499058|gb|ACQ91651.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 240

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G  +    + +  E  Q  A      I   ++  G+   
Sbjct: 7   ILIVDDDQEIRELLKEYLTRAGFDV--LTACDGVEMYQQLALSTPELIILDIMMPGDDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L + IR  SQVP+I ++        +   + G DD + KP   RE++AR+ A+ RR + 
Sbjct: 65  SLCQQIRRKSQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELMARIKALLRRAEF 124

Query: 121 -------VSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  VS  + +     + +  +      G    L   +  +L   + + G+ + +  
Sbjct: 125 RQPEKEVVSGRKLKFAGWTLDTRTQLLTHEDGSGIDLTGSDFILLHLFLQHPGQVLDRDT 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I  A  G  +    E  ++  IS+LR+KL +   G   + + R  GY +
Sbjct: 185 ISDATRGR-ESLPMERGIDVQISRLRQKLGDNGKGPRIIKTIRGSGYML 232


>gi|170736487|ref|YP_001777747.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|169818675|gb|ACA93257.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
          Length = 223

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPA--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR  +
Sbjct: 61  EVLRRLRAQKQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|238798946|ref|ZP_04642410.1| Two-component system response regulator [Yersinia mollaretii ATCC
           43969]
 gi|238717216|gb|EEQ09068.1| Two-component system response regulator [Yersinia mollaretii ATCC
           43969]
          Length = 227

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G + E    L  +E +  +   D +A+   ++      +
Sbjct: 3   ILLVDDDVELGTMLREYLSGEGFNAE--LVLTGKEGIDRALSGDYTALILDIMLPDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R +R  S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 61  DVLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDE 120

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   +     G + +    R  E QG  F L   E  +LE L+ +  + V K ++ 
Sbjct: 121 HPDLSSTDDGVITHGDLTLNPSTRSSEWQGTSFDLTASEFNLLELLLRSPDRVVTKDELS 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 DKGLGRPREAYD-RSVDVHISNIRQKLAALPGNTLNIETVRSIGYRI 226


>gi|75812821|ref|YP_320438.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75705577|gb|ABA25249.1| multi-component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 725

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++++                 +++  +       L  +   D+  ++  L    E  +
Sbjct: 3   LLIVENDRDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPD--ENGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R +R  +Q  P++ ++   +    +  F++G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  RLCRQLRTQNQQEPILLLTRKVNPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V       G +++  +  +   QG+   L  +E ++LE  + +  +   +  +   I  
Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRRIFDRRTLLDRICS 180

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + DE   E  + + I  LR+KL+   L  DP+++   LGY +
Sbjct: 181 I-DECPGEEAITTQIRGLRRKLQMAGLNSDPIETLYGLGYRL 221



 Score = 86.5 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +     A     G  +    +S +F ++L+++   D+  ++  +   G   
Sbjct: 608 LLIVDDDPALLSILEAQLQPWGFQVTTLADSSQFWQYLEATT-PDLLLLDVAMP--GFSG 664

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112
           +EL +++++    S++P++ +S +    T      +G DD + KPI   +++ R+
Sbjct: 665 IELCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 719



 Score = 61.5 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +LIDD   + +   A   +  + LE    L            D   ++       E  
Sbjct: 482 VVLLIDDDTDLIERMQANASNWSIHLETVTDLTLARQRLQYLTPDAIILDLTFPNTTESG 541

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L   ++   S +P++ ++    L   ++    G +  + KP    E+   V+ +  R+
Sbjct: 542 LTLLAQLKHQFSTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLHRI 601

Query: 120 KVSNNRA 126
              N R 
Sbjct: 602 DTINARL 608


>gi|258512232|ref|YP_003185666.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478958|gb|ACV59277.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 221

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +         GV ++     E       S   D+  ++  L   G   ++
Sbjct: 4   LIVEDEPGLVEFLRLELELSGVEVDVAMDGETALERARSEPYDLLLVDIVLP--GMSGVD 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S VP++ ++   ++   +   D+G DD + KP    E+ AR+ AI RR +V+
Sbjct: 62  LCREVRRFSNVPIMMLTARGAVADRVGGLDAGADDYLVKPFAIEELWARIRAIRRRYEVN 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G   V  D      +G+   L  RE  +L YL+ N  +  ++ ++   ++G F 
Sbjct: 122 GAPFRFGEATVHLDAHRVVYRGQEVDLTAREYDLLLYLLRNVNRTCSRQELLERVWG-FQ 180

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              + NVV+ +I  LR+KL        + + R  GY ++ 
Sbjct: 181 APGDTNVVDVYIGYLRQKLD--PERRYIKTVRGQGYRLEV 218


>gi|237731111|ref|ZP_04561592.1| DNA-binding transcriptional regulator PhoP [Citrobacter sp. 30_2]
 gi|226906650|gb|EEH92568.1| DNA-binding transcriptional regulator PhoP [Citrobacter sp. 30_2]
          Length = 224

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLRHHLKVQLQDLGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPD--EDGLS 62

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R++   +P++ ++     Q  ++   +G DD V KP H  E+ AR+ A+ RR   
Sbjct: 63  LIRRWRSNEVSLPILVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQIISLPPFQVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPDDVITTVRGQGYLFE 222


>gi|223985510|ref|ZP_03635567.1| hypothetical protein HOLDEFILI_02873 [Holdemania filiformis DSM
           12042]
 gi|223962527|gb|EEF66982.1| hypothetical protein HOLDEFILI_02873 [Holdemania filiformis DSM
           12042]
          Length = 269

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D A +           G   E   + +  +    S +  +  ++  L   G+   
Sbjct: 49  IWIIEDDASLARLISENLTKWGYPCEAATNFDQLDKEFLSVQPQLIILDVSLP--GKSGH 106

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
                IR  S+VP++ +S +      +   + G DD + KP     ++AR+ A+ RR   
Sbjct: 107 AWCAEIRKLSKVPILFLSSHNENLDIIMALNQGGDDYLTKPFSMEILVARIQALLRRAYS 166

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S    E                G    L + E +IL+ L+ N+ K V++ +I   ++
Sbjct: 167 YEPSGTLMEFQGAVFNLADASLSKDGRQCELTKNEFKILQLLLENKNKVVSREKIMLKLW 226

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D  V+EN +  ++++LR+K+      D +++++ LGY +
Sbjct: 227 NN-DCFVDENTLTVNVNRLRRKMEQLGIDDCIETRKGLGYQL 267


>gi|126656902|ref|ZP_01728080.1| two-component system response regulator [Cyanothece sp. CCY0110]
 gi|126621740|gb|EAZ92449.1| two-component system response regulator [Cyanothece sp. CCY0110]
          Length = 223

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A + +    +   +G  ++  ++ +    L      D+  ++  L   G+  L
Sbjct: 3   ILLVDDEAELTEPLYHVLSHEGYDVDVADNGQKGYELALQNNYDLLILDWMLP--GKPGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + + +R+     P++ ++   +L   +   D+G DD + KP   RE++ARV A+ RR  
Sbjct: 61  SICQELRSQGQNTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRRFP 120

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R + G + +  + +    QG +  L  +E ++L Y M +  + +   QI+  
Sbjct: 121 SLEGTGTGRLKIGDLELDPENQVAYRQGRMVSLSDKEVKLLTYFMQHPHQLLTHKQIYQF 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++    E    NV+ + I  LR+K+        + +    GY  
Sbjct: 181 LWEEP-EKPNSNVLAALIRLLRRKIEE--ESPLIHTVYGKGYRF 221


>gi|167647929|ref|YP_001685592.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350359|gb|ABZ73094.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 243

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++   +      G+        E      +    D+  ++  +       L
Sbjct: 8   ILIVDDDPHIRQLLVFALAKVGLETREAADGEAALAAVAERAPDLVVLDINMPR--LDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +RA   +P++ +S        +   + G DD V KP   RE++ARV AI RR   
Sbjct: 66  EVCRRLRAQGDLPILFLSSRDDEIDRVLGIELGADDYVVKPFSPREVVARVQAILRRTGA 125

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++     G + +  +            L   E  IL+ L A   K  ++  I 
Sbjct: 126 KAGEAAPADGLIVRGRLTLDPEAWSARWAEAEVSLTVTEFTILKTLAATPTKVFSRDAII 185

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + G    AV +  ++SH+  LR K     G D ++++  +GY +
Sbjct: 186 DRLRGPG-FAVTDRTIDSHVRNLRAKFAGVGGHDVIETRAGIGYRL 230


>gi|156742564|ref|YP_001432693.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|219850344|ref|YP_002464777.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|156233892|gb|ABU58675.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
 gi|219544603|gb|ACL26341.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 232

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 103/222 (46%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   +         + G +++  ++  E  +WL  +A  D+  ++  L       L
Sbjct: 4   LIVEDERAIAGYIKRGLEEQGYAVDVAYDGREALDWL-DAAPFDLVILDLMLPQ--IDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA   ++P++ ++   S+   +   DSG DD + KP   +E+LAR+ A+ RR  
Sbjct: 61  TVCRELRARGFRMPVLMLTARDSIDDRVRGLDSGADDYLVKPFAIQELLARLRALARRST 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + + +  R     G+   L  +E  ILE LM   G+ + +T I   ++
Sbjct: 121 DAPKTPVLHIADLMLDTATRRVSRGGKYIELTAKEYAILECLMRASGRLLTRTMIAEHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + NV++ +I  LR+K+ +      + + R  GY +
Sbjct: 181 N-YDTFNQSNVIDVYIRNLRRKIDDPFPVKLIQTVRGAGYRL 221


>gi|294678530|ref|YP_003579145.1| winged helix family two component transcriptional regulator
           [Rhodobacter capsulatus SB 1003]
 gi|294477350|gb|ADE86738.1| two component transcriptional regulator, winged helix family
           [Rhodobacter capsulatus SB 1003]
          Length = 219

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++          DG S++    L+      + A  D+  ++  L     + +
Sbjct: 3   ILIVEDDAILGAAVRDQVAADGHSVDWAMRLDQAADALAVAAYDLILLDLMLPD--GRGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + +R      P+I ++    +   ++  ++G DD + KP    E+ AR+ ++ RR  
Sbjct: 61  PFLKTLRTQGVATPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELTARIGSVARRYA 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N     G + +    R+    G+   L  RE  + E L++  G+   K  +   +Y 
Sbjct: 121 GNPNPVIRLGELTIDLAARELRRAGKAVALTAREWALFELLLSRPGQIFPKRDLEDRLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD+ +  N +E H+S+LRKKL    G   ++++R LGY +
Sbjct: 180 SFDDEIGSNTLEVHVSRLRKKL----GAQVIETERGLGYRL 216


>gi|291458269|ref|ZP_06597659.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418802|gb|EFE92521.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 240

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  L    + +  + L+   +E V  +   ++  G   +
Sbjct: 4   ILVCDDDKQIVEAISIYLAGEGFRL--LKAYDGYDALKIMDQEKVDLLIIDVMMPGLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RTTLKIREKSSIPIIILSAKGEDNDKILGLNIGADDYITKPFNPLEMVARVKSQLRRYTQ 121

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             N  E         +G + +  D ++  V+GE   L   E  IL  L+ N GK  +  +
Sbjct: 122 LGNIGEAGNLDSIYSSGGLVINDDTKEVTVEGEPVKLTPIEYNILLLLVKNAGKVFSIDE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+++I+        +N V  HI  +R+K+  N      +     +GY ++
Sbjct: 182 IYTSIWNE-QAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKVE 230


>gi|291523701|emb|CBK89288.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
          Length = 231

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED--VSAIEAFLIGKGEK 59
            ++++D   V  G   L       L+ ++ +  +  +++  + D   S +   ++     
Sbjct: 4   ILVVEDDKTVYSGIKKLLE-----LQHYSVVIAQNGMEALEKIDESFSLVIMDIMMPQLD 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E  R +R    VP++ +S        L+  + G DD + KP  + E++++V A+ RR 
Sbjct: 59  GIETCRRMRERHSVPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALIRRY 118

Query: 120 KV----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +V           +   ET  +++F++    E       L  +E  IL+ LM N  +   
Sbjct: 119 RVYDSGSANRTNKDESIETDGLKLFTNRNKVEFNDNEIKLTGKEYEILKLLMKNPDRIYT 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              I+  ++        +N V  HI  LR KL    G   + ++   GY  +
Sbjct: 179 IEMIYEMVWDEAFTYNAKNTVMVHIKNLRNKLIKACGDACIHTEWGRGYRFE 230


>gi|291302794|ref|YP_003514072.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572014|gb|ADD44979.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 230

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D              DG  +              S   D+  ++  +       ++
Sbjct: 9   LVAEDDPKQAHLIRTYLERDGHDVLVVTDGRRAVDETRSRHPDLLVLDIMMP--KLDGMD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R++R+ SQVP++ ++      T L     G DD + KP   RE+ ARV A+ RR +  
Sbjct: 67  VCRVLRSDSQVPILVLTARDDEDTLLQGLQLGADDYMTKPFSPRELAARVRALLRRSRPE 126

Query: 123 NN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      + G + V +      V GE   +  RE  +L  L A  G+  ++  I    +G
Sbjct: 127 SGPPTVFQVGRLTVDTGRVRVSVDGEPVSVTAREFAVLAALAAEPGRVFSRLDIVHRAFG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220
            FD  V    V++HI+ LR+K+       PV   +    GY++
Sbjct: 187 -FDSHVSPRTVDAHIANLRRKIEPDPAH-PVQLLTVYGHGYTL 227


>gi|253572356|ref|ZP_04849759.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|251838131|gb|EES66219.1| two-component system response regulator [Bacteroides sp. 1_1_6]
          Length = 229

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 102/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  ++  NS E    +  S+   +          G K+ 
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMDISSYHLILLDVMMGEISGFKMA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR   
Sbjct: 66  NMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTAT 125

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              + +  R     + +    +   +  E   L ++E  IL  L+ N+G+  ++  I + 
Sbjct: 126 MEAEKAPERLTYQSLVIDITKKKVSIDDEEVQLTKKEFEILLLLVQNKGRVFSREDILAR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 186 IW-SDEVYVLDRTIDVNITRLRKKIGEYG--KCIVTRLGYGYCFE 227


>gi|256374532|ref|YP_003098192.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255918835|gb|ACU34346.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 233

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G       S E         + D+  ++  L        
Sbjct: 9   LLVVDDEPHIADLVATVARYEGWQAVTAGSGEAAIRAALDFQPDIVVLDLMLPDV--DGF 66

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R   + VP++ ++        +     G DD + KP    E++AR+ A+ RR  
Sbjct: 67  TVLDRLRGEGAMVPVVFLTARDGTADRVAGLTRGGDDYLVKPFSVEELMARLRAVLRRST 126

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   +  +   + +  D R+      +  L   E  +L YLM      + K QI   +
Sbjct: 127 GPSWKRSVLKVADLVLDEDTREVRRGDRLVTLTPTEYELLRYLMRRSPTVLTKAQILDHV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     NVVE  +S LR+KL  +     + + R +GY +
Sbjct: 187 W-EYDFGGRSNVVELVVSHLRRKLDVEGDEPLIHTVRGVGYVL 228


>gi|163815874|ref|ZP_02207244.1| hypothetical protein COPEUT_02053 [Coprococcus eutactus ATCC 27759]
 gi|158448684|gb|EDP25679.1| hypothetical protein COPEUT_02053 [Coprococcus eutactus ATCC 27759]
          Length = 226

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +L++D   + +G +          E      +  +    L      D+  ++  L   G
Sbjct: 5   ILLVEDEQKIAEGIMDYMNGGEAEYETCFTWADDGDKALELVYENEYDLVLLDIMLP--G 62

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+ + IRA S VP+I ++     +  L  +D G DD V KP    E+ A++ +  R
Sbjct: 63  ADGFEICKAIRAKSYVPVIFLTARGREEDRLYGYDIGCDDYVVKPFSMAELSAKIMSFLR 122

Query: 118 RLKV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R K      +  E   I ++ D     V G    L  +E  +L+Y M +RG  + +  + 
Sbjct: 123 RSKGLWEKKSSIEAYDIVIYPDKLQVFVAGNEVRLAPKEYAMLKYFMEHRGMLITRDDLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G +D    + VV++HI KLR+ L        + +    GY +D
Sbjct: 183 VRLWG-YDYEGSDRVVDNHIKKLRQALGEPGKK--IKTVFAKGYRMD 226


>gi|170727148|ref|YP_001761174.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812495|gb|ACA87079.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 224

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++         + G  ++   + +   +  ++   DV+ ++  L  +    +
Sbjct: 3   ILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQ--DGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R +  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLIQSLRDNGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +GP+ +    +   +  EV  +   E +ILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFVKPVITSGPLNLDLAAKQVTMHEEVMEVTAFEYQILEYLMRHCHEVVAKQRLLDVVY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL +    +P+ + R  GY  +
Sbjct: 180 -ADKEGDPNTIEVMVSRLRKKLTSGGLDNPIATIRGQGYKFN 220


>gi|116690673|ref|YP_836296.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170734017|ref|YP_001765964.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116648762|gb|ABK09403.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169817259|gb|ACA91842.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 242

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLP--KMSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRISTVRGLGYCLE 219


>gi|303240446|ref|ZP_07326963.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592011|gb|EFL61742.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 232

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  + DD   + +   +    +G  +E FN         +    D+  I+  +       
Sbjct: 6   LIYIADDEVNICNIIKSFLVKEGYEVETFNDGRKILEAFNKRPADMLIIDIMMPE--LDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L   IR  S VP+I +S   +    +     G DD + KP    E++AR+ +I+RR++
Sbjct: 64  FSLCSSIREKSNVPVIIVSAKDTETDKIAGLTLGSDDYLTKPFSPMELIARIKSIFRRIE 123

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +         + +   + + SD +  E+  +   L   E  +L YL  N+ K V+++++ 
Sbjct: 124 MDKIKNEKVQKIKIADVVINSDKKQAEINDKNIGLTNMEFALLYYLAVNKNKAVSRSELL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++G FD  VE    +  I ++RKKL +      +++    G+ ++
Sbjct: 184 DKVWG-FDNEVETRATDDMIKRVRKKLTDVGSALKIETVWGYGFKVE 229


>gi|302519462|ref|ZP_07271804.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302428357|gb|EFL00173.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 227

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V+          G  +    S E      ++A  DV  ++  L   G   LE
Sbjct: 5   LLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWMLP--GMDGLE 62

Query: 63  LPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + R +R    + VPL+ ++        +   ++G DD V KP+  R + AR+ A+ RRL 
Sbjct: 63  VCRRLRTPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLRRLD 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      GP+ +   G     +G   PL   E R+L  L A+ G+ +++ Q+  A++
Sbjct: 123 TPGTPPPETHGPLTIDRTGLRVAHEGAPVPLAPSELRLLLTLSASPGQVLSRQQLLEAVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +  +V++ + +LR KL      D V++ R  GY  
Sbjct: 183 -EHSYHGDIRLVDACVKRLRNKL--AAAADRVETVRGFGYRF 221


>gi|239626813|ref|ZP_04669844.1| two-component response regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239516959|gb|EEQ56825.1| two-component response regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 243

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +  DD   +++    L   +G  +    + E      S A +    I   ++  G    
Sbjct: 19  ILFADDDPEIREVVRILLESEGYQVVEAENGEQA---ASMADDTFDLIILDVMMPGRNGF 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR     P++ ++           F +G DD ++KP  + E+ ARV A+ RR  +
Sbjct: 76  SACAEIRRRLNTPILFLTARTQDSDKTMGFGAGGDDYLSKPFSYAELAARVKAMIRRYHI 135

Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              + E G        + +     +    G    L   E RIL  L +NRGK      I+
Sbjct: 136 YKGKEEDGEESIAVKDLVIQKSFNEVMKNGGEILLTDLEYRILLLLASNRGKLFTIENIY 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +++G        N V  HI  LRKKL  +      + +    GY I+
Sbjct: 196 ESVWGEAYYYSANNTVMVHIRNLRKKLEADPKNPKYIVNVWGKGYRIE 243


>gi|332528510|ref|ZP_08404498.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332042021|gb|EGI78359.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 234

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 92/233 (39%), Gaps = 22/233 (9%)

Query: 1   MFVLIDDRALVKDG--YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + +L DD  L   G             L    SL  +E L     E   A+   ++  G 
Sbjct: 4   VLLLDDDEQL---GPPLTVYCQR--FELALAQSLRPDEGLARLRTEHFDAVILDVMLPGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E+ R +R  S +P+I ++    +   +   + G DD + KP   RE++ARV  + RR
Sbjct: 59  DGFEVCRTLRKESDIPIIMLTARGDVMDRVVGLELGADDYLPKPFEPRELVARVQTMLRR 118

Query: 119 LKVSN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
               N           +      + + +  R    QG+   L   E  +L  L    G+ 
Sbjct: 119 RHGQNGPPVMVTAGEPSVLSFEGLTLDAARRSVLRQGQAVELTGTEFELLHLLARESGRV 178

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  I + + G  D  +    V+  +S+LRKKL      D + + R  GY++
Sbjct: 179 FSRDDILTQLRG-HDAELYTRAVDIVVSRLRKKLEP---LDCIKTLRNAGYTL 227


>gi|310640161|ref|YP_003944919.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309245111|gb|ADO54678.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 219

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 97/222 (43%), Gaps = 13/222 (5%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEKVLEL 63
           +D   +++     F  +   +  + +   ++ L    S + ++  ++  +        E+
Sbjct: 2   EDEIRIREVIADYFKQNNWEV--YEAGNGKDALLWFDSVQPELIILDIMMPE--LDGWEV 57

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----L 119
            R +R+ S VP+I ++        +  F+ G DD V KP   + ++AR  A+ +R    +
Sbjct: 58  CRQVRSRSGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVEGHV 117

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  ++    G   + +     EV      L  +E  +L  L+ N+G  V++  I + ++G
Sbjct: 118 QPESHILRFGSAMLNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVVSRDAILNRVWG 177

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   +  VV++HI KLR KL        + +    GY  +
Sbjct: 178 I-NFEGDTRVVDTHIKKLRSKLGR--ESRHIRTVFGTGYRFE 216


>gi|301632442|ref|XP_002945294.1| PREDICTED: phosphate regulon transcriptional regulatory protein
           phoB-like [Xenopus (Silurana) tropicalis]
          Length = 178

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 8/172 (4%)

Query: 54  IGKGEKVLELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
           +  G+  L+L R  RA      VP++ ++        +   D+G DD + KP   +E+LA
Sbjct: 1   MLPGQSGLQLARKWRADARTKPVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLA 60

Query: 111 RVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R+ A+ RR       +    G + + +       QG+   +   E ++L Y M +  +  
Sbjct: 61  RIRAVLRRRAPEQVSDSVAIGELLLDAATYRVSWQGQQLKVGPTEFKLLHYFMKHAERVH 120

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++Q+   ++G     +EE  V+ H+ +LR+ L        V++ R  GY +
Sbjct: 121 SRSQLLDKVWGDH-VFIEERTVDVHVKRLREALGAASA--MVETVRGAGYRL 169


>gi|295398503|ref|ZP_06808537.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973226|gb|EFG49019.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 241

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 19/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED-VSAIEAFLIGKGEKV 60
            ++I+D   V +     F         F     E W    A E+ +  +   L    +  
Sbjct: 3   ILMIEDNESVAEMMSMFFEQQKDWEATFIQDGEEGWQYYLANEETIEMVILDLNLPSKDG 62

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ R IR    QVP+I ++   +    +     G DD V KP      +AR+ A+YRR 
Sbjct: 63  IQICRDIRQQNKQVPIIMLTARDAESEQVLGLGLGADDYVVKPFDPITFMARMRALYRRS 122

Query: 120 KVSNNRAE--------------TGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANR 164
           +++ +  E              T  IR+ S  R+   + ++   L  +E  IL+ L    
Sbjct: 123 QLTESAVEAAEEKGNADQFDIQTEFIRINSQNREAFYKDQLIQHLTPKEFEILQLLAGRP 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   +  + + ++       +E  V++HI KLR+K+    G   + +   +GY  D
Sbjct: 183 KQVFTREHLLTTLW-EDPFYGDERTVDAHIKKLRQKMEE-YGPQLIQTVWGVGYKFD 237


>gi|295705037|ref|YP_003598112.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
 gi|294802696|gb|ADF39762.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
          Length = 230

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F  +G  +E  +  E       S + DV  ++  +        
Sbjct: 5   ILVVDDEKSIATAVSYAFKREGYIVETASDGEEALEKVKSFQPDVMILDVMMP--KLTGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +     + +I ++    +   +   + G DD + KP   RE++AR  A+ RR++ 
Sbjct: 63  EVCRKLENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRRMEK 122

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G ++V    R   V  E+  L  +E  ++  L+AN  +   +  +   
Sbjct: 123 NEAPEAVGEITVGKVKVNLIQRTLHVANELVKLTPKEFDLIALLLANLERVYTREDLLDL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G+ D A     V+ H+ +LRKK+        + +   +GY 
Sbjct: 183 VWGM-DYAGGTRTVDIHMQRLRKKVGEA-EPYLLQTVYGVGYK 223


>gi|170767150|ref|ZP_02901603.1| transcriptional regulatory protein OmpR [Escherichia albertii
           TW07627]
 gi|251787894|ref|YP_003002615.1| osmolarity response regulator [Dickeya zeae Ech1591]
 gi|271502326|ref|YP_003335352.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|170124588|gb|EDS93519.1| transcriptional regulatory protein OmpR [Escherichia albertii
           TW07627]
 gi|247536515|gb|ACT05136.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
 gi|270345881|gb|ACZ78646.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 239

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+     E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|169826346|ref|YP_001696504.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990834|gb|ACA38374.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
          Length = 233

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +    +   +G+ S+   N++E  +    +   D   ++  L       
Sbjct: 6   ILVLEDERAIAEMIDIILRKEGMTSITLCNTIEAAKSEIYAKTFDFYLLDIMLPD--GSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE+  +IR  S  P+  ++   S    L  F +G DD + KP +  E++ARV     R  
Sbjct: 64  LEVANLIREKSDAPIFYLTAKSSDADKLRGFMNGADDYITKPFNPLELVARVKVQLARYM 123

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 E             D  +  V G    +  R   +L+YL  N G+ ++K QI+ 
Sbjct: 124 KKKQVTENHLFTCSRFTFDIDAAEITVDGVREIISGRLFHLLKYLCDNAGQVLSKEQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            ++G  D   ++N V  HI KLR+K+    G    + + R +GY +
Sbjct: 184 RVWG--DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYKL 227


>gi|254519763|ref|ZP_05131819.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913512|gb|EEH98713.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 233

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 17/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   + +        +G  ++   N LE ++ +++    D+  ++  L       
Sbjct: 5   ILIIEDDRDISEILRFALIKEGYKVKVNPNGLEVKDEIKNF-NPDLILLDIMLNDT--DG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R I +   +P+I +     +   +   + G DD + KP   RE++ RV    RR +
Sbjct: 62  FSVCRNI-SGYNIPIIMLIARVDIMDKILGLELGADDYITKPFDIREVITRVRVAIRRRE 120

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                             I +    R   V  E   L  +E  +L +L  N  K  ++ Q
Sbjct: 121 EMKKLITSKEQEEILVDNIVINEACRSVHVNNEEIQLKPKEFELLTFLCKNTNKVHSRNQ 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   I+G +D   +   V+ HI++LRKKL++      +++   +GY +
Sbjct: 181 LLDLIWG-YDFLGDTRTVDVHITRLRKKLKDNFN---IETIFGVGYML 224


>gi|160934057|ref|ZP_02081444.1| hypothetical protein CLOLEP_02920 [Clostridium leptum DSM 753]
 gi|156866730|gb|EDO60102.1| hypothetical protein CLOLEP_02920 [Clostridium leptum DSM 753]
          Length = 234

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G  +  F + +  E L+ +  +D+  I   ++      L
Sbjct: 5   ILVVDDDKEIVQAIAINLEQEGFRV--FKAYDGLEALEIAMSQDLQLIIIDVMMPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR     P++ +S        +     G DD + KP +  E++ARV +  RR   
Sbjct: 63  SAVLKIRERKNFPIMILSAKSEDTDKVLGLSMGADDYLTKPFNSMELIARVKSQVRRYTT 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K      E G +    + R     GE   L   E +I + L+ N G+     +I
Sbjct: 123 LGDIHAKTGGKTIEIGRLCYDLETRSLFADGEPVHLTATESKIFDLLIRNAGRIFPAEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++     + E N V  HI ++R+K+  N    + +     +GY I+
Sbjct: 183 YERVWNEPAFSAE-NTVMVHIRRIREKIELNPKEPEYLKVVWGIGYKIE 230


>gi|294630728|ref|ZP_06709288.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292834061|gb|EFF92410.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 237

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 21/236 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   ++         +G  +                  D+  ++  +   G   L+
Sbjct: 2   LLAEDDRAIRHALERALTLEGYEVIAVADGVEALAQAHRTPPDILVLDVMMP--GIDGLQ 59

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++RA     P++ ++        +   D+G DD V KP    E+ AR+ A+ RR   
Sbjct: 60  VCRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSP 119

Query: 122 S-----------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           +                   + E   +R+    R          L R E  +LE L+ N 
Sbjct: 120 ALAAGPAEDVPARGPQLPERQIEAAGLRMDLQARRVWRGARELELTRTEFELLELLVRNA 179

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +  + I+  I+G +D       +  ++  LR+KL        + + R +GY +
Sbjct: 180 GIVLDHSTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDEPDAPQLIHTVRGVGYVL 234


>gi|322420870|ref|YP_004200093.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320127257|gb|ADW14817.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G       +    E +     +    +   L+  G   L
Sbjct: 5   IMIVEDEEKLASLLGDYLKQSGFETVWIANGT--EVVPRVREKQPDLMLLDLMLPGRDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  SQ+P+I I+        L   + G DD V KP   RE++ARV  + RR   
Sbjct: 63  EICKEIRTFSQLPIIMITARVEEIDRLLGLELGADDYVCKPFSPREVVARVKTVLRRSGE 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
               A  G + +  D    + QG    L   E ++L +L  N G+  +++Q+   IY   
Sbjct: 123 HPAPA-AGGLTLDPDRYSAQWQGRDLDLTVVEFKLLHFLYQNPGRIYSRSQLMDRIY-SD 180

Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
              V +  ++SHI KLRKK+       + + S    GY  +
Sbjct: 181 QRIVSDRTIDSHIKKLRKKISAVAADQELIHSIYGAGYKYE 221


>gi|225016919|ref|ZP_03706111.1| hypothetical protein CLOSTMETH_00832 [Clostridium methylpentosum
           DSM 5476]
 gi|224950313|gb|EEG31522.1| hypothetical protein CLOSTMETH_00832 [Clostridium methylpentosum
           DSM 5476]
          Length = 258

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 93/218 (42%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++  G       +G   E   +    E L      +++ ++  L       L
Sbjct: 39  ILLVEDDRMLSRGIAFALSQEGH--ESICASTCREGLVLGRDAELALLDINLPD--GNGL 94

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L   +R    +P+I ++   + +  +  F++G DD + KP     +  RV A+ RR   
Sbjct: 95  DLCTQLRRERSLPVIFLTANDTEREIVAGFETGCDDYIAKPFSVPVLKQRVRAVLRRADR 154

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 +G +RV          G+   L   E  +LE L  N+G+ + +  +   ++   
Sbjct: 155 QETVFSSGALRVDYQRYSVHKDGKPVKLTATEYALLELLTKNKGRVLTRQTLIERLWDCN 214

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +  V+EN +  +I++LR+K+  +      V +   +GY
Sbjct: 215 ENFVDENALSVNIARLRRKIEEDPKHPRYVITVFGIGY 252


>gi|126650812|ref|ZP_01723028.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592477|gb|EAZ86495.1| two-component response regulator [Bacillus sp. B14905]
          Length = 265

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +          +G  +    +             D+  ++  L       L
Sbjct: 38  LLLIEDDAAIGRIVKDTMEQEGYLVTWATTGLEGLADFQEQPFDLVLVDWMLPE--MDGL 95

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S VP++ +S        ++    G DD + KP    E+ ARVA+  RR + 
Sbjct: 96  TVCQNIRWESDVPILMMSARKEEADKVEGLQ-GADDYIAKPFSLEELKARVASHLRRWRR 154

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N + E          + +        +  +   L ++E  +++ L  N  +   K +++
Sbjct: 155 YNKQEEVEEQTAYANGLIIDWQREIVSINQQEIALTQKEFALVKLLAKNPSQTFTKKELY 214

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             I+       + + V  HI  LR+KL + +     + +    GY  
Sbjct: 215 QYIWQQATLE-DTHTVTVHIKALREKLNDSVRHPYFIQTVWGRGYRF 260


>gi|149191565|ref|ZP_01869811.1| DNA-binding response regulator PhoB [Vibrio shilonii AK1]
 gi|148834583|gb|EDL51574.1| DNA-binding response regulator PhoB [Vibrio shilonii AK1]
          Length = 175

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 76/172 (44%), Gaps = 4/172 (2%)

Query: 52  FLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110
            L G  G   ++  +       +P++ ++     +  +   + G DD + KP   +E++A
Sbjct: 1   MLPGGSGINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVA 60

Query: 111 RVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           R+ A+ RR+  +   +  +   +++               +   E ++L + M ++ +  
Sbjct: 61  RLKAVIRRVTPTALEDVIDVQGLKLDPVSHRVTANDAPLDMGPTEFKMLHFFMTHQERVY 120

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ Q+ + ++G  +  VE+  V+ HI +LRK L +      + + R  GY  
Sbjct: 121 SREQLLNNVWGT-NVYVEDRTVDVHIRRLRKALESAGHDKLIQTVRGAGYRF 171


>gi|71907213|ref|YP_284800.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71846834|gb|AAZ46330.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 223

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  LV  G        G +++   S E  E        D++ ++  L       L
Sbjct: 3   ILIVEDDNLVAQGLKQGLQQLGYTVDVARSAEEAEAFAVGEDFDITLVDIGLPKA--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R     +P + ++   S+  T+   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFIRQLRTRGNRLPALILTARDSMDDTIKGLDAGADDYMTKPYRLPEVAARIRALIRRSN 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V +       IR+ +      + GE   L  RE  ILE L+      V+K ++   + G
Sbjct: 121 AVVDACLHHDGIRMDTRSHTATLNGEPLDLTNREWAILEMLLMASPAVVSKDKLVQGLAG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D+ +  N +E H+S+LR+KL    G   + + R +GY +D
Sbjct: 181 -WDKDITPNAIEVHVSRLRQKL--TTGTIVIRTVRGIGYRVD 219


>gi|56751418|ref|YP_172119.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|56686377|dbj|BAD79599.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
          Length = 249

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 91/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD + + +         G  +         + L      D+  ++  L        
Sbjct: 5   ILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRV--DGF 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ RR
Sbjct: 63  TVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 122

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +         L   E  +L  L+   G+ VA ++
Sbjct: 123 TDRIPHAARHSEILSYGPLTLIPERFEAIWFNRTVKLTHLEFELLHCLLQRHGQTVAPSE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 183 ILKEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 231


>gi|57234026|ref|YP_181946.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224474|gb|AAW39531.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 222

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +        G+ G  +E        E+  +++  D+  ++  L  K    +
Sbjct: 3   ILLLDDDKCLCQTLERALGEAGHVVEYACDGASGEYFAANSEFDLLILDIGLPDK--NGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA   V  ++ ++   SL + +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVCRKLRADGIVTSVLMLTARDSLDSKVKGLDAGADDYLCKPFACDELFARIRALQRRPP 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      ET  I   +             L   E +ILEY + N G  + ++ +   ++G
Sbjct: 121 LRVLPVVETAGISFDNVSHRVCGGKTEIKLTAAEYKILEYFITNPGVLITRSMLEEHLWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
               +V  N ++S I KLR+KL       P+ + R  GY +D
Sbjct: 181 AESTSV-SNTIDSLIKKLRQKLGWDAKSGPIKTLRGAGYRLD 221


>gi|308067144|ref|YP_003868749.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305856423|gb|ADM68211.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 228

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +         ++G  +    +      L    R  V+ ++  +        
Sbjct: 9   IMLADDEPHILQFLELGLINEGYEVRTAENGSKALDLAREFRPHVAVLDVMMPE--MNGF 66

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + ++     + +I ++    +   +     G DD V KP    E+LAR+ A   R +
Sbjct: 67  EVCQSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYVVKPFSFNELLARIEARL-RNQ 125

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +       GP +V    ++   Q +V  L   E  +L++L+ N G  ++K++I   ++
Sbjct: 126 FPDLLGEVVHGPFQVDDRRKEIRYQSQVLELSPTEYELLKFLVLNHGIVLSKSRILDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   E+N+VE +I  LR+KL++K     + + R +GY +D
Sbjct: 186 G-YDFGGEDNIVEVYIRSLREKLKDK-EHRVIRTLRGVGYRVD 226


>gi|302205664|gb|ADL10006.1| Putative sensor kinase [Corynebacterium pseudotuberculosis C231]
 gi|308275899|gb|ADO25798.1| Putative sensor kinase [Corynebacterium pseudotuberculosis I19]
          Length = 232

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G +              +    D+  ++  L   G   +
Sbjct: 12  ILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLMLP--GMNGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           ++ R+IR +S VP++ ++        +   ++G DD + KP   +E++AR+ A  RR   
Sbjct: 70  DICRLIRQNSTVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELIARLRARLRRTDD 129

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +  E   + +   G       EV  L   E  +L  L +  G+   + ++   ++G 
Sbjct: 130 APADVIEISDLAIDVPGHVVSRGREVIQLTPLEFDLLLELASKPGQVFTREELLQKVWG- 188

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           +  A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 189 YRNASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 228


>gi|284920956|emb|CBG34019.1| two-component response regulator [Escherichia coli 042]
          Length = 223

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 105/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNTLLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R++   +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221


>gi|299822697|ref|ZP_07054583.1| two component response regulator [Listeria grayi DSM 20601]
 gi|299816226|gb|EFI83464.1| two component response regulator [Listeria grayi DSM 20601]
          Length = 229

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 22/231 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS--------LEGFNSLEFEEWLQSSAREDVSAIEAFL 53
            +++DD   +      +   +G+S         EG+   E E       + D+  ++  L
Sbjct: 4   ILIVDDEKELSLLLKRILEKEGLSDISIAQNLAEGYTKFEAE-------KPDLVLLDIML 56

Query: 54  IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                +  +L + IR  S VP++ +S        L     G DD + KP   +E+  RV 
Sbjct: 57  PD--GEGYDLCKKIRETSIVPILFMSAKGEEIDKLLGLAIGGDDYITKPFSPKEVAYRVK 114

Query: 114 AIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           A  RR           + GP +   +  +    GE   L  +E  ++   M N  + ++K
Sbjct: 115 AHLRRANFTVPQQKALQVGPFQFNDNETELRKAGEPLELTAKEIALMRVFMHNPNQIISK 174

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +F  ++        +N +  HI +LR+K+       + + + + LGY  
Sbjct: 175 ETLFERVWQET-FLGADNTLMVHIRRLREKIEAQPSKPEYLITVKGLGYKF 224


>gi|256394226|ref|YP_003115790.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256360452|gb|ACU73949.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 242

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++ G     G  G ++E   + + +  L       V A+   +   G   +
Sbjct: 10  LLVVDDDPALRRGLGRALGLSGFAVE--TAADGQAALAVLGGGGVDAVVLDVSMPGISGV 67

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R     VP++ +S    +   +    +G DD V KP    E+  RV A+ RR +
Sbjct: 68  DVVRRLRRQGDDVPVLMLSALDDVADRIAGLAAGADDYVVKPFSTAELELRVRALLRRGR 127

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V +       I + +D R     G    L RRE  +LE L+ N G  + + Q+   ++G
Sbjct: 128 PVPHGVVAACGIVMDTDARTVTAAGCPLELTRREFDVLEVLVRNAGAVLTRDQLLDRVWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  V  + V++ +S LR+KL        + + R +G+++
Sbjct: 188 -YDFQVRSDAVDTVVSYLRRKLEADDRPRVLHTVRGVGFAL 227


>gi|313832563|gb|EFS70277.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
          Length = 243

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G  +   NS         + R DV  ++  L       LE
Sbjct: 21  LVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDF--DGLE 78

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR     V  + ++   +    +    +G DD V KP    E++AR+ A  RR   
Sbjct: 79  VMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRAPLRRSGA 138

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +       G + +  D R+    GE   L   E  +L Y M N  + ++K QI   +
Sbjct: 139 TEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDRV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ ++     + + R  GY +
Sbjct: 199 WN-YDFRGQANVVELYISYLRKKI-DRGHKPMIHTMRGAGYVL 239


>gi|156936433|ref|YP_001440349.1| osmolarity response regulator [Cronobacter sakazakii ATCC BAA-894]
 gi|156534687|gb|ABU79513.1| hypothetical protein ESA_04334 [Cronobacter sakazakii ATCC BAA-894]
          Length = 252

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 20  ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 77

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 78  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 137

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 138 NELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 197

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 198 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 245


>gi|104781224|ref|YP_607722.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95110211|emb|CAK14918.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 226

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 6/219 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D A+     +A     G+ ++  ++         +   D+  ++  L       L + 
Sbjct: 7   IEDDAVTGQEIVAELTSHGLEVDWADNGREGLSKAIAGGYDLITVDRMLPEV--DGLTIV 64

Query: 65  RIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKV 121
             +R+     P++ IS    +   +    +G DD + KP    E+ ARV  + RR    +
Sbjct: 65  TTLRSLKIATPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSTPM 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +  R +   + +     +     +   L   E ++LEYLM + G+ + +  IF  ++G +
Sbjct: 125 TQTRLQVADLELDLISHEARRGEQSLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 N+++ HI +LRKK+ +      + + R  GY+I
Sbjct: 184 HFDPGTNLIDVHIGRLRKKIDSPGQTPLIRTVRGSGYAI 222


>gi|38234503|ref|NP_940270.1| putative two component system response regulator protein
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38200766|emb|CAE50470.1| Putative two component system response regulator protein
           [Corynebacterium diphtheriae]
          Length = 236

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +E   S         S + D   ++  +   G    E
Sbjct: 12  LVVDDEPNIVELLKVSLKFQGFEVETAQSGIEALEKARSFQPDAFILDVMMP--GMDGYE 69

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +RA   + P++ ++   +++  +     G DD V KP    E++ R+  I RR   
Sbjct: 70  LLPKLRADGFEGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGLR 129

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            ++           + +  D  +    G+V  L   E  +L YLM N    ++K++I + 
Sbjct: 130 HDDVDDSATLVYADLTLNDDTHEVTKAGQVVELSPTEFNLLRYLMLNAEVVLSKSKILNN 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVES+IS LR+K+  +     + + R +GY +
Sbjct: 190 VW-HYDFGGDGNVVESYISYLRRKVDTQ-EPALIQTVRGVGYVL 231


>gi|238759460|ref|ZP_04620624.1| Two-component system response regulator [Yersinia aldovae ATCC
           35236]
 gi|238702357|gb|EEP94910.1| Two-component system response regulator [Yersinia aldovae ATCC
           35236]
          Length = 242

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G + E   + +       S       ++  L       +
Sbjct: 18  ILLVDDDIELGTMLREYLSGEGFNAELVLTGKAGITAALSGNYSALILDIMLPD--MSGI 75

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 76  EVLQQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDE 135

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +           G + +    R  E +G+ F L   E  +LE L+ +  + V K ++ 
Sbjct: 136 HPDVVFSDKSVITQGALILNPSTRSSEWRGKSFDLTASEFNLLELLLRSPERVVTKDELS 195

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
               G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 196 DKGLGRPREAYD-RSVDVHISNIRQKLAALPGNTLNIETVRSIGYRI 241


>gi|28896527|ref|NP_802877.1| two-component response regulator (CsrR/CovR) [Streptococcus
           pyogenes SSI-1]
 gi|28811781|dbj|BAC64710.1| putative two-component response regulator (CsrR/CovR)
           [Streptococcus pyogenes SSI-1]
          Length = 228

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+ R  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFCRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|87119735|ref|ZP_01075632.1| two-component response regulator [Marinomonas sp. MED121]
 gi|86165211|gb|EAQ66479.1| two-component response regulator [Marinomonas sp. MED121]
          Length = 229

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +    +     D   ++     +        ++ D+  ++  L   G+  
Sbjct: 5   LIYIVEDEIKIAQILVDYLVKDNYDVKVLYRGDEAVERILESKPDLVILDVMLP--GKSG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + + + +R HS VP++ ++        L     G DD V KP   RE++ARV AI RR+ 
Sbjct: 63  INICKELREHSNVPIMMLTARIDEMDRLVGLKVGADDYVCKPFLPREVVARVNAILRRVN 122

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             ++  E         I +  +       G+   L   E R+L+ +++   +  ++  + 
Sbjct: 123 RIDDEEEKSSELVYRSITLDLECFKCHANGQYVELTPVEYRLLQIMVSRPKRVFSRESLM 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
              Y   D  V +  ++SH+  LRKKL       + + S   +GY ++
Sbjct: 183 QKCY-KDDRIVSDRTIDSHVKNLRKKLAAADPSEEIIHSIYGVGYKVE 229


>gi|153212561|ref|ZP_01948308.1| transcriptional regulator CpxR [Vibrio cholerae 1587]
 gi|229521757|ref|ZP_04411175.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TM 11079-80]
 gi|254225418|ref|ZP_04919029.1| transcriptional regulator CpxR [Vibrio cholerae V51]
 gi|297581527|ref|ZP_06943450.1| transcriptional regulator CpxR [Vibrio cholerae RC385]
 gi|124116432|gb|EAY35252.1| transcriptional regulator CpxR [Vibrio cholerae 1587]
 gi|125622052|gb|EAZ50375.1| transcriptional regulator CpxR [Vibrio cholerae V51]
 gi|229341351|gb|EEO06355.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TM 11079-80]
 gi|297534365|gb|EFH73203.1| transcriptional regulator CpxR [Vibrio cholerae RC385]
          Length = 228

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      S    D+  ++  +       +
Sbjct: 4   ILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVSD-EIDLILLDVMMP--KLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + +R     P++ ++        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 61  ETLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQN 120

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +++  E   I+V+   ++   QG++  L   E  +L + + + G  + K  +   
Sbjct: 121 GLTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           + G    A +   ++ H+S LRKKL     G   + + R  GY
Sbjct: 181 VLGKHLAAFD-RAIDMHVSNLRKKLPERPDGKARIKTLRGRGY 222


>gi|290352241|dbj|BAI78831.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D GVDD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGVDDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|150015325|ref|YP_001307579.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901790|gb|ABR32623.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 231

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 101/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +   +  + + +  E L     E +  I   ++      +
Sbjct: 3   ILIVEDERDIRNLISLHMRKENYEV--YEASDGREALNIFENEKIDLILLDIMMPNVDGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + + +RA S +P+I I+   +    +     G DD + KPI   E+ ARVA+  RR   
Sbjct: 61  SVIQKVRAISTIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCYK 120

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  +    TG +++F++  +         L  +E +IL+ L++N GK   K QI+  +
Sbjct: 121 YAEHKDIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQIYEEV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +       + N +  H+S +R+K+ +       + + R +GY I+
Sbjct: 181 WEEA-YFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYKIE 224


>gi|160898293|ref|YP_001563875.1| osmolarity response regulator [Delftia acidovorans SPH-1]
 gi|160363877|gb|ABX35490.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 243

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +    +      D+  ++  +   GE  L
Sbjct: 11  ILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLMMP--GEDGL 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A+ + P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 69  SICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     GP       R  +  GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 129 PQEAPGAPSGDNEVVSFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 189 KLALLARGR-EFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVF 237


>gi|21954779|ref|NP_665764.1| ANL23 [Synechococcus elongatus PCC 7942]
 gi|81230366|ref|YP_398748.1| response regulator receiver domain-containing protein
           [Synechococcus elongatus PCC 7942]
 gi|21913201|gb|AAM81151.1|AF441790_22 ANL23 [Synechococcus elongatus PCC 7942]
 gi|81170338|gb|ABB58676.1| response regulator receiver domain protein (CheY-like)
           [Synechococcus elongatus PCC 7942]
          Length = 224

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 6/206 (2%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLI 76
               +  S++   + +    +  +       ++  + G     LE+ + +R A    P++
Sbjct: 19  ALTQERYSVDWLTNGDEAWEMIQTYPYRALVLDWMVPGC--SGLEICQRLRQAQDSTPVL 76

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFS 135
            ++    LQ  +   D+G DD + KP    E+LARV A+ RR   +     + G +R+  
Sbjct: 77  VLTARDGLQDLVQGLDAGADDYLVKPFRLAELLARVRALLRRSPQTQTPLLQVGRLRLDP 136

Query: 136 DGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194
                +V      PL  RE ++LE LM + G+ +++ Q+   ++   D     NVV + +
Sbjct: 137 AQATVQVDDYSPMPLTAREFQLLEALMHHPGQILSRDQLLDQLW-PMDAEPSSNVVAAQV 195

Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220
             LR+KL        +++    GY +
Sbjct: 196 RLLRRKLATYQADLLIETVYGFGYRL 221


>gi|332139716|ref|YP_004425454.1| probable two component response regulator transcription regulator
           protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549738|gb|AEA96456.1| probable two component response regulator transcription regulator
           protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 227

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D     D       + G  +E   +             ++  ++  L   +G K+
Sbjct: 3   ILVVEDEVKTGDYIKQGLIESGFVVELVRTGLDGHHKSMIGDYELIVLDVMLPDIEGWKI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           L   R   +    P++ ++    +   +   + G DD + KP    E+LARV  + RR  
Sbjct: 63  LSSLRE--SGKFTPVLFLTARDHVNDRVKGLELGADDYLVKPFAFAELLARVRTLIRRGT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V NN      + +    R  +  G+V  L  +E  +LE ++  +G+ + ++ I S ++ 
Sbjct: 121 SVPNNTLHIADLELDIPSRVAKRGGKVINLTTKEFTLLELMVRRQGEVLPRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +   + NV++  I +LR K+ +      + + R +GY +
Sbjct: 181 M-NFDSDTNVIDVAIRRLRAKIDDDFPVKLIQTVRGMGYKM 220


>gi|110640660|ref|YP_668388.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 536]
 gi|110342252|gb|ABG68489.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 536]
          Length = 243

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 87/201 (43%), Gaps = 18/201 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D A +++    +   +G     F  +E E++  +  +      D+  ++  L   
Sbjct: 5   ILVVEDEAPIREMVCFVLEQNG-----FQPVEAEDYDSAVNQLNEPWPDLILLDWMLP-- 57

Query: 57  GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           G   ++  + ++  S    +P++ ++     +  +   ++G DD + KP   +E++AR+ 
Sbjct: 58  GGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117

Query: 114 AIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           A+ RR+         E   + +           E   +   E ++L + M +  +  ++ 
Sbjct: 118 AVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 177

Query: 172 QIFSAIYGLFDEAVEENVVES 192
           Q+ + ++G  +  VE+  V+ 
Sbjct: 178 QLLNHVWGT-NVYVEDRTVDV 197


>gi|70732373|ref|YP_262129.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346672|gb|AAY94278.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 225

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          +       V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLHRGLTEQGYTVDLARDGVEGLHMALEGDYAVIVLDVMLP--GLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPVQISIADLWIDLISRKASRAGSRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLE 220


>gi|117920330|ref|YP_869522.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117612662|gb|ABK48116.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 219

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+  G        G+ ++  +S  +++ L     E  SAI   L        
Sbjct: 3   IMLVEDNELLAQGICLSLAKMGMQVDHLSS--YQQALVGIKNETFSAIVLDLGLPDGNGK 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL +  RA    +P I ++      T L+  D G DD + KP   RE+ AR+ AI RR  
Sbjct: 61  ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + NN    G + +  + R+   + +  PL RRE ++L  L  + G+ + + Q+    YG
Sbjct: 121 GLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLELAQSAGRVLTRNQLEQLTYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
              + V  N +E HI  LRKKL N    D + + R +GY++ + N
Sbjct: 181 W--DEVGSNSIEVHIHHLRKKLAN----DLIKTVRGIGYTLTEVN 219


>gi|333030914|ref|ZP_08458975.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332741511|gb|EGJ71993.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 226

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 105/224 (46%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + + +  +    ++  S+    +      L +S    +  ++  L       +
Sbjct: 3   LLLVEDNSRISEFMVKGLQENNFSVTLAVNGVEARQLITSKEWSLIILDIMLPD--IDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL +  R      P++ +S     +  +   + G DD ++KP H  E++AR+ A+ RR +
Sbjct: 61  ELLQYTRFKKINTPILVVSALGDPEDKIKALNYGADDYLSKPFHFGELVARINALTRRSR 120

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             N       E   I++         +G +  L  +E ++L+ LM N  K +++T+I ++
Sbjct: 121 SENTHASTLLECKGIQLNVTEHLVYKEGALIHLTLQEFKLLQLLMENLDKVLSRTEIINS 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++GL D     N+V+ +IS LR K+ +K     +++ +  GY I
Sbjct: 181 VWGL-DYESNTNIVDVYISYLRNKIEDKSKAKIIETVQGRGYII 223


>gi|293394600|ref|ZP_06638894.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291422909|gb|EFE96144.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 231

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   + D  +     +G  +  F   E      +     +  ++  L        
Sbjct: 5   IWLVEDEPSIADTLVYTLESEGFQVRWFERGEPALQALAQGEPALIILDVGLPD--INGF 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R + A S  +P++ ++        L   + G DD V KP   RE+ ARV  I RRL 
Sbjct: 63  ELCRRLLAQSADLPILFLTARSDEIDRLLGLEIGADDYVAKPFSPREVSARVRTILRRLH 122

Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + +  D            L R E  +L+ L+   G+  ++ Q+  
Sbjct: 123 KQQRITASATHRVGELVLDEDAATVHYYQRPLALTRYEYLLLKTLLLAPGRVFSRQQLME 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            ++   ++++E   V++HI  LR KLR       P+ + R LGYS+
Sbjct: 183 VVWAQAEDSLE-RTVDTHIKTLRAKLRAVNAHASPIHTHRGLGYSV 227


>gi|226314253|ref|YP_002774149.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097203|dbj|BAH45645.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 241

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 102/230 (44%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +      +   +G  S++   + E           D+  ++  L       
Sbjct: 6   ILLVDDEQAILQLLETVLHKEGFHSIDKVKTSEEALCACERKSYDLIVLDVTLPN--MSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E    IR  +  P++ +S   +    L  F  G DD V KP +  EI+AR+ A+ RR +
Sbjct: 64  IEACPFIRRLTDAPILFLSARDTDFDKLTGFAVGGDDYVTKPFNPMEIVARIKALLRRTR 123

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +             + G  +V     +  V+G+V P P    ++L +L  N  +  +K+
Sbjct: 124 KTSAAVPTAPVQGVYDFGRFQVHEAAGELCVEGKVIPCPSLVFQLLLFLCKNPNRIFSKS 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +++  ++G+ +   ++N +  HI ++R+++  +    + + + R LGY +
Sbjct: 184 ELYERVWGV-NSLRDDNTIMVHIHRIRERIEPDPAQPEFLVNVRGLGYKM 232


>gi|75908138|ref|YP_322434.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701863|gb|ABA21539.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 238

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++  I  F      +E     +    L       +  ++  L        
Sbjct: 11  ILVVDDDFGVRN-LIYRFLSRKYQIESAADGKTALSLFEQFNPALVILDWNLPDT--SGY 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L + +++ + V ++ ++        +    +G DD + KP    EI  RV A+ RR++ 
Sbjct: 68  SLCQEMQSRNNVLVMILTGRTEEADKIKILAAGADDFITKPFSLAEIEVRVQALLRRIRS 127

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                + R     + +  +GR+  +  +   L   E  IL +L ++ G+  ++ Q+   I
Sbjct: 128 IKPSPSQRLIFKQLAINPEGREVTLNDKPLNLTALEFNILHFLASHPGQAWSRPQLIQKI 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G  D   +  VV+ HI +LRKKL +     + + + R  GY  +
Sbjct: 188 WGC-DYVGDGRVVDVHIGQLRKKLESDTSIPEFIKTVRGYGYKFE 231


>gi|88800403|ref|ZP_01115968.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
 gi|88776850|gb|EAR08060.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
          Length = 224

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 88/219 (40%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+++D   + +         G  +  F+  +  +    +   D+  ++  L   G   L
Sbjct: 4   IVIVEDERQLAELERDYLKAAGYEVTLFDRGDTAQQWLETHEPDLLVLDLMLP--GLDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S VP+I  +        L   + G DD + KP   RE++ARV  I RR   
Sbjct: 62  ELCRNLRRRSTVPIIMTTARVEEVDRLIGLEIGADDYLCKPFSLRELVARVKVILRRTHP 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                 +    +       E+      L + E R+L  L  +  +  ++ QI   IY   
Sbjct: 122 EAAPPVSLNPILNEALAMVELGSHSVELTQVEVRLLALLQNHPRRIFSRDQIIDHIY-ED 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYS 219
              V +  V+SHI KLR+KL+      D + S    GY 
Sbjct: 181 RRIVSDRTVDSHIKKLRRKLQQLSEDHDFIHSVYGAGYR 219


>gi|310659192|ref|YP_003936913.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Clostridium sticklandii DSM 519]
 gi|308825970|emb|CBH22008.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Clostridium sticklandii]
          Length = 230

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 12/227 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +E     E         +  +  ++  L        +
Sbjct: 6   LIVDDEENIVELLKFNMELKGYKVEYAYDGEEALKKAKDIKPGLILLDLMLPI--MDGTK 63

Query: 63  LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +   IR        P+I ++     +  +   + G DD + KP   +E++ARV A+ RR 
Sbjct: 64  VCSKIREDEELKDTPIIMLTAKNMEKDKIYGLELGADDYITKPFSIKELMARVKAVTRRY 123

Query: 120 KVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              +        E   + +  +  +   + E   L  +E  +L+ L  NRGK + +  + 
Sbjct: 124 AAPSQPIMDTSLEISELYIDMENYEVFKRNEKIDLTLKEFELLKLLALNRGKVLTRNYLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             I+G ++   E   V+ HI  LRKK+ +       +++ R +GY I
Sbjct: 184 DKIWG-YEYFGETRTVDVHIRHLRKKIEDNDKKPQYIETIRGVGYKI 229


>gi|28211166|ref|NP_782110.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203606|gb|AAO36047.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 231

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            ++               + D+  ++  L        
Sbjct: 4   ILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLP--KMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ RII     VP++ +S        +     G DD + KP    E++ARV +  +    
Sbjct: 62  DILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYER 121

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  K++NN      + +  D R   +  +   L ++E  +L ++     +   K +
Sbjct: 122 LKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKDE 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +F +I+GL D   +   V  HI ++R+K+  N      +++   +GY I
Sbjct: 182 LFESIWGL-DSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRI 229


>gi|319409984|emb|CBY90313.1| putative two-component system transcriptional regulator protein
           [Neisseria meningitidis WUE 2594]
          Length = 225

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD AL+ +        +G+++      E       S + DV  +++ +       L+
Sbjct: 5   LLVDDDALLTELLTEYLSAEGLNVHSVPDGEAGVQEILSGQYDVVVLDSMMP--KMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR + S
Sbjct: 63  VLKNVRARSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQHS 122

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI--- 173
                  N      + ++   R   V+     L   E  +LE LM + G+ V+K  +   
Sbjct: 123 GEQNNAPNSISVSDVVLYPAKRQASVKDMPLELTSTEFNLLEVLMRHAGQVVSKETLSVE 182

Query: 174 -FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-----RSIDVHISSIRHKLGDA---SLIQTVRGLGYLFVKN 225


>gi|293376504|ref|ZP_06622732.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292644730|gb|EFF62812.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 233

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         D+G  +   +   E  E ++ S    +  ++  +       
Sbjct: 4   ILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMP--KMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R +R   + P+I +S       TL   + G DD + KP    E++ARV A  RR K
Sbjct: 62  LELCRRVRDQLKAPIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRREK 121

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +       +++ +  +         L  RE ++ +Y + N G+ +++ Q
Sbjct: 122 RHQMNAIESLQDVLPFDHFKLYPNRYEVFKDEVNIDLSPREFQLFQYFVENSGRVLSREQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           IF AI+G  +   +   V  +I  LR+KL        + +   +GY +
Sbjct: 182 IFDAIWG--ENYGDIGTVAVNIKNLRQKLDPD--NQYIKTIWGVGYKL 225


>gi|260778334|ref|ZP_05887227.1| DNA-binding heavy metal response regulator [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260606347|gb|EEX32632.1| DNA-binding heavy metal response regulator [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 226

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +    I  F  +G ++    +         S   DV  ++  L  K     
Sbjct: 3   ILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQK--DGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P++ +S   S+   +    SG DD + KP    E+LAR  ++ RR +
Sbjct: 61  EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +     +     + +       E  G    L +RE  +++ ++ N    ++KT I   +
Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G      + NVV+  + +LR K+        + + R +GY +
Sbjct: 181 WG-HQFDPQTNVVDVLVCRLRSKVDKGFDTPLIHTLRGVGYVL 222


>gi|254773908|ref|ZP_05215424.1| two component response transcriptional regulatory protein prra
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 223

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD + V           G  +    +++  E L+S+      AI   +       + +
Sbjct: 2   VVDDDSDVLASLERGLRLSGFEVS--TAVDGAEALRSATETRPDAIVLDINMPVLDGVSV 59

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
              +RA  + VP+  +S   S+   +   ++G DD + KP    E++ARV A+ RR    
Sbjct: 60  VTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGAT 119

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S+     GP+ V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++
Sbjct: 120 ATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D A + NVV+  I  LR+KL    G   + + R +G+ +
Sbjct: 180 G-YDFAADTNVVDVFIGYLRRKLEANGGPRLLHTVRGVGFVL 220


>gi|170757144|ref|YP_001781246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122356|gb|ACA46192.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D       ++G+++  F + +  + L     +D+  I   ++      ++
Sbjct: 7   LIVDDEDEIRDAIEIYLRNEGITV--FKAKDGIDALMLLEDQDIHLIIMDIMMPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR +  +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVNL 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + ++   G + +    +   V  +   L   E RILE L+ N+G+  +  +I+  
Sbjct: 125 GNYKETEDKVVAGTLVLDKKRKIVTVDEKKIRLTPIEYRILELLIENKGRVFSIEEIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 AWKEPYYNGE-NTVAVHIRRIREKIEINPREPRYLKVVWGIGYKI 228


>gi|56418866|ref|YP_146184.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|56378708|dbj|BAD74616.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
          Length = 223

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 96/224 (42%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   + +  + L    G+  ++     E       +   DV  ++  L       
Sbjct: 3   ILLAEDDLHLGELIVHLLKKKGIDHIDWVQEGEDAYDYAMAEFYDVVVLDWMLPN--GDG 60

Query: 61  LELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + +   +R +     ++ ++   ++Q  +   ++G DD + KP    E++AR+ A+ RR 
Sbjct: 61  VNICSRLRQNGYTGAILMLTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRT 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +   +       +           E   L  RE ++L+ L+ N+G+ V +  I   +
Sbjct: 121 FVPLQEEKVTFHGFTLNRTSHTLHRGDEEIFLTPREFQLLDLLVQNQGQVVPRETILDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D  V    +++ I  LRKKL++    D + + R +GY ID
Sbjct: 181 WG-WDADVSMKTIDATIKLLRKKLKD----DVIQTVRGVGYKID 219


>gi|297529461|ref|YP_003670736.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297252713|gb|ADI26159.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 224

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 98/222 (44%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G       + + EE L   ++  V A+   ++   +    
Sbjct: 7   LIVDDEEEMRLLVGMYLENAGFRC--LEAGDGEEALVLLSQHPVDAVLLDVMMPKQDGFA 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           +   IR  S VP++ ++        +     G DD + KP    E++AR+ A+ RR++  
Sbjct: 65  VCARIREQSDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++ R + G + +   GR   V GE   L  +E  +L +L  +RG   ++  +   ++G
Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGEAVKLTLKEFELLLFLAKHRGLVFSRDDLLVKVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D       V++H+  LR KL++      + +   +GY  +
Sbjct: 185 -YDYTGNARTVDTHVKTLRMKLKDA--ARHIQTVWGIGYKFE 223


>gi|290475831|ref|YP_003468723.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Mg+] (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289175156|emb|CBJ81959.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Mg+] (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 227

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A+++        + G  ++   + +  ++       D++ ++  L   GE  L
Sbjct: 3   ILIIEDEAILRHHLTVQLRELGHQVDAAENTKEADYYLKENHPDIAIVDLGLP--GEDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R  R+    +P++ ++ + S Q  +   ++G DD V KP    EI AR+ A+ RR  
Sbjct: 61  SMIRRWRSDQVNLPILILTVHDSWQEKVTVLNAGADDYVTKPFRLEEINARIQALMRRHS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++   E  P  +    ++  V      L   E  I+E LM N GK V+K  +   +Y 
Sbjct: 121 GLASQLVELSPFLIDLSRKEFSVNKNSIKLTAFEYTIIETLMRNNGKVVSKESLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  + +LRKK+ N+   + + + R  GY  D 
Sbjct: 180 PDAELRESHTIDVLMGRLRKKISNEWSDEVIVTVRGQGYRFDV 222


>gi|302381990|ref|YP_003817813.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192618|gb|ADL00190.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 226

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D A +        GD G +++     E   +L  +   DV  ++  L    G  VL
Sbjct: 4   LLVEDDADLSRQLKMALGDAGYAVDHAADGEEAHFLGDTEPYDVVVLDLGLPKIDGVSVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E  R  R     P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ RR   
Sbjct: 64  E--RWRRDGKTTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++     G +R+        V GE   L   E R+L Y+M ++G+ +++T++   +Y  
Sbjct: 122 IASATLSCGGLRLDPKAARATVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  I +LRKK    +G D +++ R LGY +
Sbjct: 182 -DFDRDSNTIEVFIGRLRKK----VGSDRIETVRGLGYRL 216


>gi|294628412|ref|ZP_06706972.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
 gi|292831745|gb|EFF90094.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
          Length = 249

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  +              + R D   ++  L       L 
Sbjct: 25  LVVDDDPDLAEVLSGALRYQGWEVRTAEDGASAVAEARALRPDAVVLDVMLPDT--DGLT 82

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +      V ++ ++   +++  +    +G DD V KP    E++AR+  + RR  +
Sbjct: 83  VLRRLHEVRPDVCVLLLTARDAVEDRIAGITAGGDDYVTKPFSLEEVIARLRGLLRRAGM 142

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +       R   G + +  D R+    GE+  L   E  +L +LM N  + ++KTQI   
Sbjct: 143 ARQPADGPRLTVGDLVMDEDAREVTRAGELIELSPTEYELLRFLMRNPRRVLSKTQILDR 202

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D     +VVE +IS LRKK+ +      + + R  GY +
Sbjct: 203 VW-SYDFGGRAHVVELYISYLRKKV-DAGREPMIHTVRGAGYVL 244


>gi|254249195|ref|ZP_04942515.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
 gi|124875696|gb|EAY65686.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
          Length = 223

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPA--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR  +
Sbjct: 61  EVLRRLRAQKQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|260774751|ref|ZP_05883654.1| two-component system response regulator OmpR [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609313|gb|EEX35465.1| two-component system response regulator OmpR [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 239

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A+S +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  E G   +    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 TELPGAPSSEESVVEFGEFSLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|261406258|ref|YP_003242499.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329922002|ref|ZP_08277809.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
 gi|261282721|gb|ACX64692.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328942462|gb|EGG38725.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
          Length = 232

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 101/225 (44%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   ++   +     +G  + E  N  E    LQ++   D++ ++  +   G    
Sbjct: 5   LILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTTPDIDIALLDVMVP--GIDGF 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ + +I ++     Q  +     G DD V+KP    E++AR+ ++ RR+ 
Sbjct: 63  EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLRRVN 122

Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V    A     ++GP  +    +  +  G+   L   E  ++++ +      +++  +  
Sbjct: 123 VQRAGAAKVSFQSGPFTLDLISKQFKKNGQPVELTPTEFSLVQFFLEKENTPLSRDVLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            ++G  +   +  +V+ +I +LR+K+  N    + + +    GY 
Sbjct: 183 HVWGK-EYMGDPKIVDVNIRRLRQKIEGNPSEPEYLQTVWGHGYK 226


>gi|156972517|ref|YP_001443424.1| transcriptional regulator CpxR [Vibrio harveyi ATCC BAA-1116]
 gi|156524111|gb|ABU69197.1| hypothetical protein VIBHAR_00149 [Vibrio harveyi ATCC BAA-1116]
          Length = 229

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      +S   D+  ++  +       +
Sbjct: 4   ILLIDDDTELTSLLKEVLSFEGFDVTEANDGEAGLAAINS-EIDLILLDVMMP--KLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R + + P++ ++        +   + G DD + KP   RE+LAR+ AI RR   
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSS 120

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          E   I+++   ++      +  L   E  +L + + N G+ + K  +  
Sbjct: 121 TQKSSKNSDCIEYQEIKLYPGKQEAYCDNALMDLTTTEFALLTHFVQNPGQVLTKEALSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|160879024|ref|YP_001557992.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427690|gb|ABX41253.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 236

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 94/232 (40%), Gaps = 17/232 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +G      + G ++  F +   ++ L+    E +      ++      + 
Sbjct: 7   LIVEDDREILEGIGIYLRNQGYTV--FQAENGKKGLEIMQNETIHLAIVDIMMPVMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   +R +   P+I +S        +   + G DD V KP    E++ARV +  RR    
Sbjct: 65  MTMKLRENFDFPVIMLSAKSEEIDKVTGLNIGADDYVTKPFTPMELMARVNSHLRRYSRY 124

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    K   N    G + +  D  +  V G    L   E +IL  L+ N G+  + 
Sbjct: 125 LKAVDSKEEKEPENYYVVGGLELNEDTVEVSVDGRAVKLTPIEFKILLLLIKNPGRVFSP 184

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +I+  ++   ++ +  + +  H+ ++R+K+  N      +     +GY I+
Sbjct: 185 DEIYERVWN--EKPITTDTIMVHVRRIREKIEINPKEPKYLKVVWGVGYKIE 234


>gi|37526697|ref|NP_930041.1| DNA-binding transcriptional regulator PhoP [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786129|emb|CAE15181.1| Two-component response regulator PhoP [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 222

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        D G  ++   + +  ++    +  D++ ++  L   GE  L
Sbjct: 3   ILIVEDNMLLRHHLTVQLRDTGHLVDAAANAKEADYYLVESEPDIAIVDLGLP--GEDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R   + +P++ ++   S Q  +   D+G DD V KP H  EI+AR+ A+ RR  
Sbjct: 61  SLIRRWRQKDEKLPILVLTARESWQEKVTVLDAGADDYVTKPFHLEEIIARMQALLRRNN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   E  P ++    ++  V GE   L   E RI+E LM N  K V K  +   +Y 
Sbjct: 121 GLVSQIIEFPPFKIDLSRKEFTVYGESVKLTAFEYRIIEILMCNSDKVVTKESLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  I +LRKK+ +   ++ + + R  GY  D 
Sbjct: 180 PDAELREGHSIDVLIGRLRKKILDIWPYEAIVTVRGQGYRFDV 222


>gi|146279695|ref|YP_001169853.1| histidine kinase A domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557936|gb|ABP72548.1| histidine kinase A domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 220

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++ DG  A     G S E   SLE       + R D   ++  L       L
Sbjct: 3   ILVVEDDAVLSDGLRAGLRIAGFSPETVASLEDARAALLAGRFDAMVLDLMLPD--GSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L   +R+    VP++ ++    L   +   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DLLVEVRSAGLAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +S  R     + +              PL  RE  +L  LM      ++K Q+   +YG
Sbjct: 121 ALSETRPAWNGVTLDLAALVASRADGPVPLSPREFSVLRALMDRPRAVLSKAQLEEQLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N VE HI KLR KL    G D +++ R  GY +
Sbjct: 181 -WQEEIESNAVEVHIHKLRSKL----GHDFIETVRGAGYRL 216


>gi|119715795|ref|YP_922760.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536456|gb|ABL81073.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 228

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D   +         + G  +E  ++     + L S    DV+ ++  L   G   
Sbjct: 3   ILVAEDDVRLAGLLEESLAEAGWQVEVVHNGRVAYDRLLSDTSFDVALLDWMLP--GMDG 60

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + R +R     +P++ ++    ++  +D  D+G DD + KP    E+LAR+ A+YRR 
Sbjct: 61  VTVARRLRGLGLALPILMLTARGDVRDRIDGLDAGADDYLPKPFDLDELLARLRALYRRG 120

Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +      + G + V    R     G    L  RE  IL  L ++ G+ V +  I   ++
Sbjct: 121 GLGGEAPVQIGDLVVDPGARRVSRGGVEIILSTREFDILYLLASHAGQVVTRLTILDEVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +  +  NV++ H++ +R K+    G D + + R +GY +D
Sbjct: 181 DG-ETDLRSNVIDVHLAAIRGKIDKPFGTDTITTLRGVGYRLD 222


>gi|328545463|ref|YP_004305572.1| Response regulators consisting of a chemotaxis protein CheY domain
           and a winged-helix DNA-binding domain [polymorphum
           gilvum SL003B-26A1]
 gi|326415204|gb|ADZ72267.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 242

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 114/221 (51%), Positives = 155/221 (70%), Gaps = 1/221 (0%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           MFV++DDR +V  GY + F  +G +       E  EW+ +++ +D++++EA L+G  E+ 
Sbjct: 1   MFVIVDDREIVTSGYTSGFEREGFACMALLPSELAEWINAASEDDLASVEAVLLGDCEER 60

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              P IIR    Q P+I + + P L+ TLD F  GVDDV+ KP+H REILARV AI RR 
Sbjct: 61  PGFPPIIRTRCGQTPIIALEEKPCLEQTLDLFACGVDDVLRKPVHVREILARVGAIRRRT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  + G IRVF DGRDP V GEVF LPRRERRILEY+  N G+RV KTQI++A+YG
Sbjct: 121 MAEADNLDVGRIRVFFDGRDPIVGGEVFELPRRERRILEYMARNHGRRVTKTQIYNAVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L +E V+E VVESH+SKLRKKL+ +LG+DP++SKR++GY +
Sbjct: 181 LMNEEVDECVVESHVSKLRKKLKMRLGYDPIESKRYIGYML 221


>gi|290352153|dbj|BAI78787.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+R   +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRSQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|224038940|gb|ACN38369.1| putative two-component system response regulator [Micromonospora
           inyonensis]
          Length = 231

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++   +    D G ++   ++           R D+  ++  L        
Sbjct: 4   LLLIEDDLTIRTPLVRALRDRGHAVAAASTAMDGLRDALENRPDLVVLDLGLPD--LDGR 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL R++RA S VP+I  +        +   D+G DD V KP    ++ ARV A+ RR   
Sbjct: 62  ELLRMLRAVSPVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARVRAVLRRGGS 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G +RV    R   + GE   L  RE  +L +L A  G+ V K ++ + +
Sbjct: 122 AAGADDPALVVGGLRVDPRARQVTLDGEPVELTPREFDLLHHLAARPGEVVTKRELMTEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +      +  V+ H+S LR+KL  N      + + R +G  +
Sbjct: 182 WQIP-YGGADKTVDVHLSWLRRKLGENAQQPRYLHTVRGVGVRL 224


>gi|229042173|ref|ZP_04189928.1| hypothetical protein bcere0027_2460 [Bacillus cereus AH676]
 gi|228727170|gb|EEL78372.1| hypothetical protein bcere0027_2460 [Bacillus cereus AH676]
          Length = 182

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 72/176 (40%), Gaps = 10/176 (5%)

Query: 54  IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           +      +E+ + +R  + VP++ ++        +     G DD + KP    E++ARV 
Sbjct: 1   MMPKIDGIEVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVK 60

Query: 114 AIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
           A+ RR                    + +  +        E   L  +E  +L++  +N G
Sbjct: 61  ALMRRFLVLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPG 120

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   KTQ+F  ++   +   ++N V  HI KLRKK+  +      + +   +GY  
Sbjct: 121 QVFTKTQLFRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 175


>gi|94986248|ref|YP_605612.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94556529|gb|ABF46443.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 221

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       D G ++E  +S             D+  ++  L        
Sbjct: 6   ILVIEDDLDIANVLRLDLTDAGYAVEHADSAMNGLIRAREDHPDLILLDLGLPDF--DGG 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R +S VP+I ++   ++   +     G DD + KP H  E++ARV    R  + 
Sbjct: 64  DVVQRLRKNSAVPIIVLTARDTVDEKVRLLGLGADDYLIKPFHPDELIARVKVQLR--QR 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +     G + +    R    + E   L  +E  IL  L+   G+  ++ +I   I+   
Sbjct: 122 VSESLSMGDLTLDPQKRLVTYKNEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGR 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 NVV+ H++ LR KLR+  G+  + + R +GY++
Sbjct: 182 LPEG-SNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYAL 219


>gi|57242283|ref|ZP_00370222.1| phosphate regulon response regulator PhoB [Campylobacter
           upsaliensis RM3195]
 gi|57016963|gb|EAL53745.1| phosphate regulon response regulator PhoB [Campylobacter
           upsaliensis RM3195]
          Length = 224

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M  +++D A + +  +       ++ +GF  +E  +    +    V  ++  L       
Sbjct: 1   MVFVLEDDANILELVLYALKSQNINAQGFLDIESFKKALKTEIPQVLVLDVMLPNA--SG 58

Query: 61  LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ + ++A+     + ++ ++        +   D G DD + KP    E +AR+ AI R
Sbjct: 59  FEILKELKANANTKNISVLMLTALNHEIDKVKGLDLGADDYITKPFSVMEFIARIRAILR 118

Query: 118 RLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R+    N        + +    R+ +V   +  L  +E  +L +L+ N+ +  ++  +  
Sbjct: 119 RISQEQNTENIVLDELELSYKTREVKVCDAIIVLTLKEFELLGFLLKNQNRVFSRDDLLE 178

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +  + E   ++ HI  LR+KL   +    + + R +GY I
Sbjct: 179 ILWG-YSYSGESRTIDIHIKTLRQKLG--IASRFIKTIRGVGYKI 220


>gi|319944530|ref|ZP_08018801.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
 gi|319742243|gb|EFV94659.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
          Length = 252

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G                 +   D+  ++  L   G   +
Sbjct: 16  LLVVEDEPKLAVLVCRYLDAAGFQTGILADGRLVVNAVRTNPPDLVLLDLMLP--GRDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ R IR  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR   
Sbjct: 74  DICREIRTFSSVPIIMMTARVEEIDRLLGLELGADDYICKPFSPREMVARVRAVLRRTLA 133

Query: 120 ----------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
                           K ++       + + +      ++G    L   E R+L  L A 
Sbjct: 134 DAVKPQQKAVAEAVLEKPADVSPPPDGLWIDTVRHAAWLEGSPLELTPVEFRLLSVLAAM 193

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            G   ++  +   +Y      V    V++H+  LR+K+   L   D + S   +GY 
Sbjct: 194 PGHVFSREDLLERLY-EDHRVVNGRTVDTHVKNLRRKMGRILPDSDLIQSVYGMGYK 249


>gi|84578942|dbj|BAE72909.1| two-component response regulator mutated protein M3-f
           [Streptococcus pyogenes]
          Length = 228

 Score =  213 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIPTVRGMGYVI 225


>gi|167996917|gb|ACA14308.1| two component heavy metal transcriptional regulator [uncultured
           bacterium]
          Length = 253

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       + G  ++   +    +   +   ++ S +   ++       E
Sbjct: 4   LLVEDEIKLGEYIKKGLTEAGFIVDHHTT--GLDGYHALMTDEFSVVLMDVMLPDVSGFE 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R  RA     P++ ++    L   +   + G DD + KP    E++ R+ ++ RR   
Sbjct: 62  LVRNYRAAGKHTPVLFLTAKDDLSDKIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRANQ 121

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+          +++    R          L  +E  +L++L+  +G+ + ++ I S ++
Sbjct: 122 SDYKSTIMHIADLKMDIAKRTVHRGDTAIKLTAKEFSLLQFLLERQGEVLPRSVIASQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ ++     + + R +GY +D
Sbjct: 182 DM-NFDSDTNVIDVAIRRLRLKIDDEFAIKLIHTVRGMGYRLD 223


>gi|167579955|ref|ZP_02372829.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 257

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 13  ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPR--MSGL 70

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 71  DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 131 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLC- 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 190 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 229


>gi|148379575|ref|YP_001254116.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148289059|emb|CAL83149.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 230

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+++  F + +  + L      D+  I   ++      + 
Sbjct: 7   LIVDDEDEIREAIEIYLKNEGITV--FKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIN 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR +  +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVNL 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + ++   G + +    +   V G+   L   E RILE LM N+G+  +  +I+  
Sbjct: 125 GNYKETEDKVVAGALILDKKTKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 AWKEPYYNGE-NTVAVHIRRIREKIEINSREPRYLKVVWGIGYKI 228


>gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
 gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 233

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +  S++     E       S   D+  ++  +        
Sbjct: 9   ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMP--KLSGE 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR  S +P+I ++    +   ++  D G DD + KP    E+ AR+    R    
Sbjct: 67  EVCKIIRKTSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSN 126

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N        +++           +   L + E  +  YL+ N+   V++ +I + ++G
Sbjct: 127 FSNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKILNEVWG 186

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+ +      + + R  GY +
Sbjct: 187 -YDYMGEEKIVDVYINALRKKI-DYDENKFIHTVRGFGYVL 225


>gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 228

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++         +  S++     E       S   D+  ++  +        
Sbjct: 4   ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMP--KLSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +IIR  S +P+I ++    +   ++  D G DD + KP    E+ AR+    R    
Sbjct: 62  EVCKIIRKTSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSN 121

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N        +++           +   L + E  +  YL+ N+   V++ +I + ++G
Sbjct: 122 FSNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKILNEVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D   EE +V+ +I+ LRKK+ +      + + R  GY +
Sbjct: 182 -YDYMGEEKIVDVYINALRKKI-DYDENKFIHTVRGFGYVL 220


>gi|254822956|ref|ZP_05227957.1| two component response transcriptional regulatory protein prra
           [Mycobacterium intracellulare ATCC 13950]
          Length = 223

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD + V           G  +    +++  E L+S+      AI   +       + +
Sbjct: 2   VVDDDSDVLASLERGLRLSGFEVS--TAVDGAEALRSATETRPDAIVLDINMPVLDGVSV 59

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
              +RA  + VP+  +S   S+   +   ++G DD + KP    E++ARV A+ RR    
Sbjct: 60  VTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGAT 119

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S+     GP+ V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++
Sbjct: 120 ATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D A + NVV+  I  LR+KL    G   + + R +G+ +
Sbjct: 180 G-YDFAADTNVVDVFIGYLRRKLEAHGGPRLLHTVRGVGFVL 220


>gi|229100335|ref|ZP_04231208.1| Response regulator [Bacillus cereus Rock3-29]
 gi|228683091|gb|EEL37096.1| Response regulator [Bacillus cereus Rock3-29]
          Length = 240

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD   + +   A+   +G     +     +E +      + D+  ++  L      
Sbjct: 13  ILIVDDEKEILNLLEAVLKKEGFQ-HIYTCTTGKEGIHMCKQVQPDLIILDIMLPD--LD 69

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + IR  + VP+  +S        +     G DD + KP   +E+  ++ A +RR 
Sbjct: 70  GYSVCQQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRN 129

Query: 120 KVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         + G I +            +  L  +E  IL +L+ N  +  +K +++ A
Sbjct: 130 QYQEKARIVYQFGDITIDEAQGTVLRGDTLLTLTAKEFNILLFLIKNPNQIFSKARLYEA 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           ++G       +N++  H+  LR+K+ +       + + R LGY ++
Sbjct: 190 VWGDT-YLGNDNIMMVHMRHLREKIEDNPSKPHYLVTVRGLGYKLN 234


>gi|332186432|ref|ZP_08388176.1| response regulator [Sphingomonas sp. S17]
 gi|332013415|gb|EGI55476.1| response regulator [Sphingomonas sp. S17]
          Length = 236

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D        IA     G  +   +  +    L +    D   ++  L   G   L
Sbjct: 16  ILVIEDDGATAAAIIAELKQHGHEVTHASDGDAGLELATREAFDAITLDRMLP--GLDGL 73

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   +R     +P++ +S    +   +    +G DD + KP    E+  RV  + RR +
Sbjct: 74  SLVARLRERHITIPVLMLSALSDVDERIAGLRAGGDDYLTKPFDFAEMAMRVEVLLRRRE 133

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       G I      R  +V GE   L   E R+LE+LM N+G+ + +  IF  ++G
Sbjct: 134 QAEAVVLRGGGIECDLVRRTVKVDGEPVRLLHMEFRLLEFLMRNQGEVMTRRIIFERVWG 193

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +      N++  HI++LRKK+       P+ + +  GY  D
Sbjct: 194 YY-FDPGANLISVHIARLRKKIDRPDRSSPIQTVKGEGYLFD 234


>gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072766|gb|ADJ62165.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 237

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D +++ DG        G + +   +    +   S+   D+  ++  L       L
Sbjct: 3   ILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLP--KMSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S++P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+   +G   + + R LGY ++
Sbjct: 180 EWGEEVSNNAIEVYVHRLRKKIE--VGGVRIATVRGLGYCLE 219


>gi|183599417|ref|ZP_02960910.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827]
 gi|188021661|gb|EDU59701.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827]
          Length = 231

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G         +         + D+  ++  L   G   L 
Sbjct: 12  LVVEDEPKLGQLLYDYLQAAGYQPSILQRGDEVIDYVRQQQPDIILLDLMLP--GMDGLT 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R   ++P+I ++        L   + G DD + KP   RE++ARV  I RR + +
Sbjct: 70  ICRELRKFCEIPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCQRA 129

Query: 123 NNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +  ++ P + +  +        ++  L   E R+L+++  N G   ++ Q+   +Y   
Sbjct: 130 ASPDKSRPQLIIDENAFQVRYGEQLLELTPAEFRLLKFMSDNAGTVFSRDQLLDILYDDH 189

Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              V +  ++SH+  LR+KL         + S   LGY  D
Sbjct: 190 -RIVTDRTIDSHVKNLRRKLELLDNEKTFIRSIYGLGYRWD 229


>gi|163838816|ref|YP_001623221.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952292|gb|ABY21807.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 247

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 94/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G  ++  +       +    R DV  ++  L   G   +E
Sbjct: 25  LVVDDEPSLAELMSMGLQMAGWDVQVAHDGNEALKIAREYRPDVLVLDIMLP--GFDGVE 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IR     +P + ++   ++Q  +    +G DD V KP    E+L R+  I +R  V
Sbjct: 83  LLGKIRLFAPNIPALFLTAKDAVQDRVAGLTAGGDDYVTKPFSMEEVLLRLHRIVQRAGV 142

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + +  D R      +   L   E  +L YLM N  + ++KTQI   ++
Sbjct: 143 IAEDSAEVRVGDLVLNHDTRQVTRGADDVTLTATEFELLRYLMENPKRVISKTQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+        + + R  GY +
Sbjct: 203 N-YDFGGQVNIVELYISYLRKKIEANH-PPMIHTVRGAGYIL 242


>gi|85058937|ref|YP_454639.1| DNA-binding transcriptional regulator BasR [Sodalis glossinidius
           str. 'morsitans']
 gi|84779457|dbj|BAE74234.1| two-component system response regulator [Sodalis glossinidius str.
           'morsitans']
          Length = 222

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++I+D  L+++G       +  + E  ++L     L +S    +  ++  L  G G  +
Sbjct: 3   ILVIEDDKLLREGLQQALEQESFACECASNLGQSWPLLTSTTYSLIILDLGLPDGDGMTL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  ++ R  + VP++ ++   ++   +   D G DD + KP    E+LAR  AI RR +
Sbjct: 63  LE--KLRRQGNGVPVLILTARDAIDERVRGLDFGADDYLIKPFALSELLARSRAIIRRHQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            VSNN      I +     D  V G+   L  +E  IL  LM   G R+ +  +   +Y 
Sbjct: 121 GVSNNLLWVDDISLDLTHHDVTVDGKAVILTPKEFAILSRLMLRAGHRIHREILHQDLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+    N +E HI  LR+K+    G   + + R  GY +
Sbjct: 180 SWDDDPSSNSLEVHIHHLRQKI----GRGRIQTLRGFGYLL 216


>gi|150019435|ref|YP_001311689.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905900|gb|ABR36733.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 242

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 94/241 (39%), Gaps = 27/241 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +   + G  + E    +       +  ++  L        
Sbjct: 6   ILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPD--ISGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +I+   S   ++ ++    +   +   + G DD + KP   RE+ AR+ AI+RR+  
Sbjct: 64  ELCKIMSQKSY--IVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIFRRVSK 121

Query: 122 S----------------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
           +                       ++ +     +  D R     G+   L R+E  +L Y
Sbjct: 122 NIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVIKDGKEIMLKRKEFDLLSY 181

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L  N+G    + Q+ + ++G +D   +   V+ HI +LR  L +      V++   +GY 
Sbjct: 182 LYKNKGIVFNRQQLLNEVWG-YDYYGDTRTVDVHIRRLRANLGDDKENSIVETVFGVGYV 240

Query: 220 I 220
           I
Sbjct: 241 I 241


>gi|296159315|ref|ZP_06842141.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295890574|gb|EFG70366.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 219

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G  A     G +++             +    +  ++  L       +E
Sbjct: 4   LLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKAGLALDTTVYALVVLDLGLPRV--SGME 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R +   VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR + 
Sbjct: 62  LLKRLRDSGKDVPVLVLTARSTVLDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQG 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +     + V    +  EV     PL  RE  IL  L+ N+G   +++++  ++YG 
Sbjct: 122 RSVEQIRYLDLTVNPAAQTVEVGTRRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E +E N +E H+S LRKKL    G   + + R +GY ++
Sbjct: 181 WQEEIESNAIEVHVSNLRKKL----GAKLIKTVRNIGYVME 217


>gi|295108877|emb|CBL22830.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 225

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G   +     +  E L+    E    I   L   G   L
Sbjct: 3   ILIIEDEEQLCCSIAEGLRMNGYETD--TCFDGNEGLELCMTESYDLILLDLNLPGTDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +  R + S  P++ +S    +Q  ++  D G +D + KP H  E+ AR+ ++ RR  
Sbjct: 61  DILQQFRTSDSTTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   + G I   +  R   V      L R+E  +LEY + ++G+ ++  ++   ++ 
Sbjct: 121 IQEDICLKCGRIIFDTRTRKASVDDATLSLTRKESALLEYFLLHQGRIISPEEMIEHLWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N +  HIS LRKKLR  LGFDP+ +K   GY +
Sbjct: 181 GS-VNSFSNSIRVHISSLRKKLRAALGFDPIQNKIGQGYIL 220


>gi|152998159|ref|YP_001342994.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839083|gb|ABR73059.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 223

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 107/222 (48%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++++D  ++ +         G  L+   +      + +    D+  ++  L    G ++
Sbjct: 3   ILVVEDDRILGEAISQRISRMGHGLDLAQTGLQANQMLALQEYDLMLLDLNLPDMTGNQI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R  + HS  P+I ++    ++  ++  D G DD + KP+   E+ AR  A+ RR +
Sbjct: 63  LQTLR--KKHSNTPVIVLTARDGIKDRIELLDLGADDYMTKPVDFGELEARCRALLRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + N  E G + +        V G +  L +RE R+LE  +++ G+ ++K  +   IY 
Sbjct: 121 GQAQNTIEYGNVSLNLQACSVTVDGNLIDLKQREFRLLEVFISHTGRVLSKEALIEHIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            F+E    +V+E ++++LRK L++      + + R LGY ++
Sbjct: 181 -FNENPNSSVIEIYVARLRKSLQDSDIN--IRTIRGLGYLLE 219


>gi|301166631|emb|CBW26207.1| putative two-component system response regulator [Bacteriovorax
           marinus SJ]
          Length = 224

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 100/227 (44%), Gaps = 15/227 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +     +    +G  +    SL     L+S   E++  ++  L     + ++
Sbjct: 5   LLVEDDDSLGSSLKSYLTGEGHEVVWAQSLSMARELKSD--EEIIILDWMLPD--GQGVD 60

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
             + +R A    P+I ++    L   +   ++G +D + KP   RE++AR+    R    
Sbjct: 61  FLKELREAEINKPVIMLTARTDLIDKVIGLEAGANDYMTKPFEPRELIARIRVQIRDHAK 120

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S+     G + +  + R+    GEV    + E   L  L  +  +  ++ +I + 
Sbjct: 121 KDHDSSDGVLTRGDLVINQNEREIRWHGEVIEFTKMEFDFLTLLAESPNRAFSREEILNK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++G ++       V++H+ ++R+KL +    + +++ R +GY   +N
Sbjct: 181 VWG-YENYPSTRTVDTHVLQIRQKLSD----ELIETVRGIGYRFRFN 222


>gi|290352123|dbj|BAI78772.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+ R  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFSRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|266622104|ref|ZP_06115039.1| DNA-binding response regulator PhoB [Clostridium hathewayi DSM
           13479]
 gi|288866189|gb|EFC98487.1| DNA-binding response regulator PhoB [Clostridium hathewayi DSM
           13479]
          Length = 223

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +              +    S+     + S  + D+  I+  +      VL
Sbjct: 4   IYYVEDDRNIASLVAEYLEQRDCIVSIIPSIAEARQMLSRQKPDLCLIDWNMPDGQGDVL 63

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R IR     +P+I ++    ++  +  F  G DD V KP     + +R+ A+ RR  
Sbjct: 64  --CRSIRFRWKDMPIIFLTARGDVKDIVAGFGCGADDYVVKPFELEVLYSRIQALLRRAG 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            VS+       I +    +      E   L + E ++LE L+ N+G+ +++ QI   ++ 
Sbjct: 122 TVSDQVLSCDFISLNHSKKTVFCGDEEITLSQMEYQLLEVLLKNKGQTISREQILHEVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                V +N +   + +LR+KL   L    + + R  GY ++
Sbjct: 182 SNGSYVNDNTLTVTMKRLREKLHQPL---CIKTIRSFGYRME 220


>gi|218256845|ref|ZP_03474359.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225919|gb|EEC98569.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii
           DSM 18315]
          Length = 255

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 102/227 (44%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFL-IGKGEK 59
            +++DD   + +        +G  ++   +   EE L    A   +  ++  +    G K
Sbjct: 33  ILVVDDEEDLCEILKFNLEIEGYEVD--TAFSAEEALKMDIASYQLLLLDVMMGEISGFK 90

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +  + R     + +P+I ++   +    L  F+ G DD ++KP   R+++ARV A+ RR 
Sbjct: 91  MASILRKEEKTADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVLRRT 150

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   +   + + +      V G+  PL ++E  IL+ L+ N+G   ++ +I 
Sbjct: 151 SDKEKVQENECLKYETLSLDTKRIKASVDGQEVPLTKKEFEILKLLLENKGNVFSREEIL 210

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S I+   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 211 SRIW-KDEVYVLDRTIDVNITRLRKKIGPYGKN--IVTRLGFGYCFE 254


>gi|168185598|ref|ZP_02620233.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169296235|gb|EDS78368.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 234

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +   +       S+    S   +E L+   +++   I   ++       
Sbjct: 5   ILVIEDDIEIANIIRSHLTRQEYSVNW--SSTGKEGLEDFRKDEYDLIILDIMLPEIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S VP++ +S        +     G DD + KP    E+ ARVA   +R K 
Sbjct: 63  AVCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLVELEARVANNIKRYKY 122

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N +            + +  D     +  E   L  +E  +L  L  N  K   K +++
Sbjct: 123 YNEKTSNNNIWKYKNGLTIIKDEMKVLIDNEKIELTAKEFSLLIVLAQNENKVFTKKELY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++   +     N +  H+ +LR+KL++ +     + +    GY  
Sbjct: 183 ENVWNQDNLEGN-NTITVHVKELRQKLKDNVKNPKYIQTVWGTGYKF 228


>gi|315170598|gb|EFU14615.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
          Length = 230

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + D        + +++   +  +       +   D+  ++  L        E
Sbjct: 6   LIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPT--MDGFE 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR   Q P++ +S        +     G DD + KP    E++AR  A   R +  
Sbjct: 64  ICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   I V +      V         +E ++L +LM +  +   K ++F +
Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVVVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           ++G      E + V  HI ++R+KL+   L   P+++    GY  +
Sbjct: 184 VWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFN 229


>gi|255523798|ref|ZP_05390763.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512501|gb|EET88776.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 242

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 93/234 (39%), Gaps = 22/234 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK 56
            +LIDD   + D    +   +G      +  G + ++  E      + D+  ++  L   
Sbjct: 11  ILLIDDEEDITDLIEDILLKEGFKNIKKAHCGLDGIKICE----DEKPDIVVLDIMLPD- 65

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
               +E+ + IR  S  P++ +S   S    +     G DD V KP   +EI  R+ A +
Sbjct: 66  -IDGIEVCKKIRQFSYCPILFLSAKNSDVDKIVGLSMGGDDYVTKPFSPKEIAFRIKAQF 124

Query: 117 RRLKVS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           RR +           N   +   I +         +     L  +E ++L YL  N  K 
Sbjct: 125 RRQQYDGIKEVSDNKNENIKISNINIDKLHSQVYKEDIEVKLTAKEYKLLLYLAENSNKI 184

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           V K ++   ++G  D    +N +  HI  LR+KL  N    + + +   LGY +
Sbjct: 185 VNKERLCEVVWG-DDYIGYDNTISVHIRHLREKLEKNPSKPEIIVTVIGLGYKL 237


>gi|225075455|ref|ZP_03718654.1| hypothetical protein NEIFLAOT_00460 [Neisseria flavescens
           NRL30031/H210]
 gi|224953273|gb|EEG34482.1| hypothetical protein NEIFLAOT_00460 [Neisseria flavescens
           NRL30031/H210]
          Length = 225

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD AL+ +        +G+++      E       + + DV  +++ +       L+
Sbjct: 5   LLVDDDALLTELLTEYLTAEGLNVHSVPDGEAGVQEILTGQYDVIVLDSMMP--KMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR + S
Sbjct: 63  VLKNVRTQSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQHS 122

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI--- 173
           N      N      + ++   R   ++     L   E  +LE LM + G+ V+K  +   
Sbjct: 123 NEQNNAPNNISVSDVVLYPAKRQASIKDTPLELTSTEFNLLEVLMRHAGQVVSKETLSIE 182

Query: 174 -FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-----RSIDVHISSIRHKLGDA---SLIQTVRGLGYLFVKN 225


>gi|325519076|gb|EGC98569.1| OmpR family two-component system response regulator [Burkholderia
           sp. TJI49]
          Length = 220

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G       +G +++     +       S    +  ++  L  +    L 
Sbjct: 4   LLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRSTGYGLLLLDLGLPNR--DGLS 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +   +R   +  P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR   
Sbjct: 62  VLASLRRRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVNRRHAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G +R+        +  +  PL  +E  +L  LM + G  +++ Q    +Y  
Sbjct: 122 RAQTTLAIGALRLDPVKHQVWLNDDEVPLSPKEFVLLHELMRDPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDMIRTVRGVGYRI 216


>gi|160947611|ref|ZP_02094778.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
 gi|158446745|gb|EDP23740.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
          Length = 227

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 98/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G  +    S E    L       V  ++  L   G    
Sbjct: 4   ILLVEDEENIRLFTKINLEREGFEVLEAESGEIGVELALKYNPQVVILDVMLP--GIDGF 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ +I+R    ++ +I ++        ++  +SG DD ++KP +  E++ R+ ++ RRL 
Sbjct: 62  EVCKILREKLPKIGIIMLTAKTQDVDRINGLESGTDDYLSKPFNPVELILRIKSLIRRLD 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S++     P R+    +     G+   L   E  I+   M+N GK  ++ ++ +  
Sbjct: 122 SIQNSSDLINIYPFRLDLYSKSFYKDGKEIELTPTELTIITIFMSNPGKAFSRNELLNMT 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +G  +   +  +V+ +I +LR K+ +       +++    GY   WN
Sbjct: 182 WGE-EFEGDIKIVDVNIRRLRAKIEDNSSKPKYIETVWGTGYR--WN 225


>gi|56552218|ref|YP_163057.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761709|ref|ZP_04759796.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260752274|ref|YP_003225167.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56543792|gb|AAV89946.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374017|gb|EER63550.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258551637|gb|ACV74583.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 235

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G S+  ++  +        +  D+  ++  +       +
Sbjct: 5   IALVDDDRNILASVSMTLQSEGFSVRVYSDGKTALNALLESPPDLVVLDIKMPI--MDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I ++             SG DD + KP   R ++AR+ A+ RR + 
Sbjct: 63  EVLRRLREKSMVPVIFLTSKDDELDEALGLASGADDYIAKPFSLRLLIARIRALLRRTEA 122

Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      +++    G + +  D       GE   L   E  ILE L    G   ++
Sbjct: 123 RFQEKSEETPQNSHIIVRGRLVMDPDRHQVSWDGEDISLTVTEFLILEALAQRPGFVKSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            Q+    Y   D  V++  ++SHI +LR+K R     F  +++   +GY  
Sbjct: 183 DQLMDTAY-QDDVYVDDRTIDSHIKRLRRKFRQVDNQFKSIETLYGIGYRF 232


>gi|33597212|ref|NP_884855.1| two-component response regulatory protein [Bordetella parapertussis
           12822]
 gi|33573639|emb|CAE37924.1| two-component response regulatory protein [Bordetella
           parapertussis]
          Length = 229

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG       +G +++        +   +    D+  ++  L       L
Sbjct: 3   ILIAEDDSILTDGLSRSLRHNGYAVDAVRDGLAADSALAVQPFDLLILDLGLPH--LPGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA + V P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSVLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR   V  +   L  RE  +LE L+A  G+ V+KTQ+   +  
Sbjct: 121 GGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEILLARSGRMVSKTQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + EAV  N +E ++ +LRKKL        + + R LGY ++
Sbjct: 180 EWGEAVSTNAIEVYVHRLRKKLEPSGVK--IITVRGLGYCLE 219


>gi|113968625|ref|YP_732418.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114049227|ref|YP_739777.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|117918739|ref|YP_867931.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|113883309|gb|ABI37361.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890669|gb|ABI44720.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
 gi|117611071|gb|ABK46525.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 225

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A   D  +  F + G ++E  +         +S + D+  ++  L       L
Sbjct: 3   ILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLLQATSGQYDLLILDRMLPQ--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +RA     P++ +S    +   +    +G DD + KP    E+L R   + +R +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +   G +++    R+  + G    L  +E ++L+YLM +  + +++T +F A++
Sbjct: 121 SVPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221


>gi|257064991|ref|YP_003144663.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256792644|gb|ACV23314.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 229

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++        D G ++      +    +  +   DV  ++  +        
Sbjct: 5   ILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPE--MDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + +R  S VP+I +S        +   + G DD + KP +  E +ARV    RRL  
Sbjct: 63  QVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLKG 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K          + +  +       GE   L   E RI+   M + G+   K QI
Sbjct: 123 MAAAQPKRPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +   D    EN V   +S+LR KL +  G + + + R LGY ++
Sbjct: 183 YECGWDE-DYVAAENSVMVCMSRLRSKLGDD-GQEAIKTIRGLGYRLE 228


>gi|229489226|ref|ZP_04383092.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis
           SK121]
 gi|229324730|gb|EEN90485.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis
           SK121]
          Length = 228

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 14/223 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A    +G  +E                 D+  ++  +   G   LE
Sbjct: 7   LVVDDEVSICESIAARLRAEGYDVELAFDGPSAVARCEQMDADLVVLDVMMP--GFDGLE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R I+A   VP++ ++        L     G DD ++KP   R ++ARV A+ RR   +
Sbjct: 65  VCRRIQAVRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVQALLRRADRA 124

Query: 123 NNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +         E G + +    R      +   L R E  ++ YL       + +  +  
Sbjct: 125 EHAARPVADLLEFGDVVIDLTERRVRRDAQEVHLTRTEFDLIAYLAERPRAAIPRESLLE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            I+G + E      V+SH+  LR+KL    G   + +   +GY
Sbjct: 185 EIWG-WGEGAGSRTVDSHVKALRRKL----GPSVIRTVHGVGY 222


>gi|254473390|ref|ZP_05086787.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211957506|gb|EEA92709.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 224

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/222 (49%), Positives = 159/222 (71%), Gaps = 1/222 (0%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M++++D++ LV DGY + F  +G+S  GF+  +F +WL ++   +  A+EA LIG+  + 
Sbjct: 1   MYLIVDEQQLVTDGYASGFEREGISTSGFSPDDFRDWLNTAPDTEFEAVEAILIGEIGER 60

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +  +IIR   SQ P++ ++  P L+ TL  F +GVDDVV KP+H +EILARV AI RR 
Sbjct: 61  DKFSQIIRRRCSQKPVLVLNSSPVLEQTLKLFAAGVDDVVRKPVHPQEILARVNAIKRRT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   E G + V+ DGRDPE++G    LPRRERRILEYL  N G+R+ KTQI++ +YG
Sbjct: 121 TNQSINVELGDLTVYFDGRDPEIKGNTLALPRRERRILEYLAQNNGRRLTKTQIYNFVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +F+  V+ENV+ESHISKLRKKLR+++G+DP+DSKR+LGY I+
Sbjct: 181 IFESEVDENVIESHISKLRKKLRSQMGYDPIDSKRYLGYIIN 222


>gi|210631746|ref|ZP_03296988.1| hypothetical protein COLSTE_00873 [Collinsella stercoris DSM 13279]
 gi|210159866|gb|EEA90837.1| hypothetical protein COLSTE_00873 [Collinsella stercoris DSM 13279]
          Length = 241

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEK 59
           +++DD   + D     F  +G  +   N         S++R    A +  L+        
Sbjct: 14  LVVDDEVEIADMLAEYFRMEGYDVATANDGAAALEAVSASRGGRGAFDIILLDVNMTNMD 73

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E+ R IR H   P+I ++        +D F +G DD V KP     +  RVAA   R 
Sbjct: 74  GFEVCRRIREHLSCPIIFLTARVEDVDQIDGFAAGADDYVLKPFSLEVLGRRVAAHMARE 133

Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             +  + +       + +    R  EV G    L + E  ++  L    G+   +  I+ 
Sbjct: 134 GRARRQEQAVRFFRGLTIDYGSRTVEVAGSPVDLTKLEFDLVALLSKRPGQVFDREAIYE 193

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219
            ++G +D A + + V  H+ ++R KL    L  DP+++   +GY 
Sbjct: 194 RVWG-WDAAGDPSQVREHVRRIRNKLAAAGLDEDPIETVWGVGYR 237


>gi|312885159|ref|ZP_07744839.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367172|gb|EFP94744.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 219

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  I     +    E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDEPRLGEQIIEALEQNEWVPELSQDGIDALYRATSEEWDAIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R  +   P+I +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLNGLRDENINTPVIILSARDTLTQRIEGLNAGADDYLTKPFEMPELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGNLSLDTRSSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  + ++RKK+  K     + + R LGY ++
Sbjct: 181 Q-DFDRDSNTIEVFVGRIRKKIAPK----VIKTVRGLGYQLN 217


>gi|2108342|emb|CAA70146.1| OmpR protein [Yersinia enterocolitica]
          Length = 239

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEETVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|15605840|ref|NP_213217.1| transcriptional regulator (PhoB-like) [Aquifex aeolicus VF5]
 gi|2982999|gb|AAC06611.1| transcriptional regulator (PhoB-like) [Aquifex aeolicus VF5]
          Length = 228

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
             LI+D   +          +G  +E F          S    D+  I+  L    G ++
Sbjct: 8   IALIEDDKDLAFLVKLNLEREGFEVEHFERATPFFKFISENSVDLILIDIMLPDLDGFRI 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               +      ++P+I I+     +  L  F+ G DD + KP   +E++ARV A+ +R K
Sbjct: 68  ANFLKSRADLKEIPVIFITAKGEEEDKLKGFELGADDYITKPFSMKELIARVRAVLKRYK 127

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   +   + + ++ +   V G    L   E +IL+ LM N G+ V+++ +   ++
Sbjct: 128 KVSESKVLKYEGVELDTERQKLFVDGREVYLTPAEFKILKTLMENFGRPVSRSSLVEKLW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             ++    E  ++ H+  +R KL    G   + + R +GY  +
Sbjct: 188 D-YERETTERAIDVHVKHIRDKLGKYKG--LIKTVRGVGYKFE 227


>gi|37523731|ref|NP_927108.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214736|dbj|BAC92103.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 246

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 89/230 (38%), Gaps = 13/230 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + +         G  +         +        D+  ++  L       L 
Sbjct: 5   LVIDDDPAILELVAFNLEMSGYEVLEAPDGHKGQAFALQMLPDLIVLDLMLPQV--DGLT 62

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + +R     +++P++ ++    ++  +  F++G DD + KP    E+L RV A+ RR 
Sbjct: 63  ICQRLRRDERTAEIPILMLTALGQIKDKVGGFNAGADDYMTKPFEIEELLVRVRALLRRT 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          GP+ +  +  +     +   L   E  +L  L+   G+ V+ ++I
Sbjct: 123 DRMPQAARHAEILSLGPLTLIPERFECIWFNKPIKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
              ++G +D   +   +  HI  LR KL  +      + +    GY ++ 
Sbjct: 183 LREVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPQFIKTVYGAGYCLEV 231


>gi|322831824|ref|YP_004211851.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321167025|gb|ADW72724.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 227

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G       + +       S       ++  L       +
Sbjct: 3   ILLVDDDLELGTMLSEYLIAEGFDASLVLTGKAGVEGAMSGEYTAMILDIMLPD--MSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R +S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR++ 
Sbjct: 61  DVLRQVRKNSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRVEE 120

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N+    G + +    R  E +G  F L   E  +LE L+ +  + V+K ++  
Sbjct: 121 QQESHSDNSSVNYGDLTLNPATRSSEWRGVPFDLTASEFNLLELLLRSPERVVSKDELSE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220
              G   EA +   ++ HIS +R+KL +  G D   +++ R +GY I
Sbjct: 181 KGLGRPREAYD-RSIDVHISNIRQKLGSLEGGDILTIETVRSIGYRI 226


>gi|254163333|ref|YP_003046441.1| osmolarity response regulator [Escherichia coli B str. REL606]
 gi|253975234|gb|ACT40905.1| osmolarity response regulator [Escherichia coli B str. REL606]
          Length = 239

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGTPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|187478800|ref|YP_786824.1| two-component system response regulator [Bordetella avium 197N]
 gi|115423386|emb|CAJ49920.1| two-component system response regulator [Bordetella avium 197N]
          Length = 231

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG       +G +++        +   ++   D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAAQPFDLLILDLGLPQV--TGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA + + P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G +     GR   V      L  RE  +LE L++  G+ V+KTQ+   +  
Sbjct: 121 GGGSTLIRHGRLVFDQTGRVATVDDHALDLSAREVSLLEILLSRSGRMVSKTQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKKL        + + R LGY ++
Sbjct: 180 EWGEEVSTNAIEVYVHRLRKKLEPSGVK--IITVRGLGYCLE 219


>gi|53804200|ref|YP_114203.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757961|gb|AAU92252.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 224

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG      +DG  L    +  + +    +   D+  ++  L        
Sbjct: 3   ILLVEDDETLADGLSRSLAEDGFDLTVAATGTYADSALRTQDYDLVILDLGLPD--IDGK 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R   S VP++ ++    L   +   + G DD + KP   RE+ ARV A+ RR  
Sbjct: 61  EVLRQLRVRKSPVPVLILTARDGLDDRIGGLELGADDYMTKPFELRELEARVRALIRRSH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    GP+ + +  R   V GE   LP RE  +LE L+   G+ V+K +I   +  
Sbjct: 121 GGFGHDIVCGPLVLNTFDRQVHVNGEPMLLPSREYGVLEALLLQAGRVVSKDRIALRLAS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             DE  + N +E ++ +LR++L +      + + R LGY ++
Sbjct: 181 GGDELAD-NAIEVYVHRLRRRLDDLGI--RIRTVRGLGYLLE 219


>gi|332753082|gb|EGJ83466.1| transcriptional regulatory protein qseB [Shigella flexneri 4343-70]
          Length = 210

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 9/213 (4%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+ DG        G S++ F      +    SA  D   ++  L   G    ++ R  R 
Sbjct: 2   LIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDGRDILREWRE 59

Query: 70  HSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAE 127
             Q  P++ ++   +L   ++    G DD + KP    E+ A++ A+ RR    ++N   
Sbjct: 60  KGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAAKLEALMRRTNGQASNELR 119

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y  +DE V  
Sbjct: 120 HGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY-TWDEEVTS 178

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N VE H+  LR+KL    G D + +   +GY++
Sbjct: 179 NAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 207


>gi|298247426|ref|ZP_06971231.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550085|gb|EFH83951.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 239

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +  DD + +          +   +   +  E    +      D+  ++  +       
Sbjct: 7   VILTADDDSQLLRLVSRNLELEDYEVLTASDGEQALAIVEKQLPDLILLDVMMPRV--DG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + IR  S VP+I I+     +  +   D G DD + KP    E+LARV A+ RR +
Sbjct: 65  FTVCKHIREFSMVPIIIITARGQDRDKVKGLDLGADDYLTKPFSIEELLARVRAVLRRSR 124

Query: 121 VSNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            S +        +A  G + +           +   L   E R+L YL  N G+ V   Q
Sbjct: 125 FSASEPGQSARMQASIGELTIDYSQHLIIKGTKELSLTPIEYRLLAYLAQNMGRIVTHDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   ++G  +   E ++++ +I++LR+KL  +      + +K  +GY +
Sbjct: 185 LLEHVWG-SEYIGESHMLQVNINRLRRKLEPDPSHPRYLLTKVGIGYFL 232


>gi|242240600|ref|YP_002988781.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
 gi|242132657|gb|ACS86959.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 226

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A + +        +G S      +   E +  +  +  +A+   ++      +
Sbjct: 3   ILLVDDDAELGNMLCEYLTAEGFSTS--QVMTGREGVDGAMSDQYTAMILDIMLPDMSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R   Q+P+I ++        +   + G DD V KP + RE++AR+ A+ RR + 
Sbjct: 61  DVLRQVRRDRQIPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYED 120

Query: 122 SNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +           G + +    R  E  G+ F L   E  +LE LM +  + V K ++  
Sbjct: 121 RSEASADVSTVSYGDLVINPSTRSSEWCGKAFDLTASEFNLLELLMRSSERVVTKDELSE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              G   EA +   V+ HIS +R+KL    G    +++ R +GY I
Sbjct: 181 KCLGRRREAYD-RSVDVHISNIRQKLALLDGCTLTIETVRSVGYRI 225


>gi|255690604|ref|ZP_05414279.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM
           17565]
 gi|260623875|gb|EEX46746.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM
           17565]
          Length = 228

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 103/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  ++  NS E    L   + + +          G K+ 
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKLDICSYQLILLDVMMGEISGFKMA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR   
Sbjct: 66  NMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTAA 125

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +       R     + +    +   +  E  PL ++E  IL  L+ N+G+  ++  I + 
Sbjct: 126 AETERVPERLTYQTLVIDITKKKVSIDEEEVPLTKKEFEILLLLVQNKGRVFSREDILAR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+   +  V +  ++ +I++LRKK+   +    + ++   GY  +
Sbjct: 186 IW-SDEVYVLDRTIDVNITRLRKKIG--IYGKCIVTRLGYGYCFE 227


>gi|91228465|ref|ZP_01262389.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01]
 gi|269966827|ref|ZP_06180900.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B]
 gi|91188000|gb|EAS74308.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01]
 gi|269828494|gb|EEZ82755.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B]
          Length = 229

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      ++  + +  I   ++      +
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAG---LAAINDKIDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R + + P++ ++        +   + G DD + KP   RE+LAR+ AI RR   
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSS 120

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          E   IR++   ++   + ++  L   E  +L + + N G+ + K  +  
Sbjct: 121 TQKNTKNSDCIEYQEIRLYPGKQEAYCEQQLLDLTATEFALLTHFVQNPGQVLTKETLSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|254254972|ref|ZP_04948289.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124899617|gb|EAY71460.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 221

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +     +     G +++          L    R D+  ++A L   G    
Sbjct: 3   ILVVEDDAEIGAAIRSRLARLGHAVDLEADGATAHGLLRVERFDLVVLDANLP--GMDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR  
Sbjct: 61  TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N+    G + +    R  E+ G+   L R+E  +LE L +   +  +K ++ + ++ 
Sbjct: 121 GHANDVLTLGGLAIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +E    N VE +++++R+KL        + + R +GY I
Sbjct: 181 FGNEPT-ANAVEQYVTRVRRKL--AGSSVEIRTVRGMGYQI 218


>gi|77460884|ref|YP_350391.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77384887|gb|ABA76400.1| tw-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 225

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L   +   V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLHRGLTEQGYTVDRARDGVEGLHLALESDYAVIVLDVMLP--GLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIRGLRDGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPVQVSIADLWIDLISRKATRAGTRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFDEKLLHTIRGMGYVLE 220


>gi|152974374|ref|YP_001373891.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023126|gb|ABS20896.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 224

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 84/219 (38%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +         G +     S +               ++  +        
Sbjct: 4   ILLVDDEPKMLELLTLYLTPKGYNCVCATSGQEAISYIEKQNFKFVLLDIMMPN--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR+ S++P++ ++        +     G DD + KP H  E+LAR+ A+ RR   
Sbjct: 62  ETCKNIRSFSRIPILMVTARDQKIDVVHGLKIGADDYITKPFHEEELLARIEAVLRRTN- 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + + +   +          +  +   L   E  +L   + +    +++ Q+   I+GL 
Sbjct: 121 EHEQIQYKGLLWDEVKHFVSIYEQEVLLTPIEFSLLGLFLRHINYVLSRDQLIERIWGL- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGY 218
           +   E+  ++SHI  LR KLR       +   +   +GY
Sbjct: 180 NANTEDRTIDSHIRNLRDKLRKARFPIDIHLKTVYGVGY 218


>gi|83309728|ref|YP_419992.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82944569|dbj|BAE49433.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 238

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L+     ++   +G+ ++   +   E+ L+     D   I   L+       E
Sbjct: 4   LVVEDDQLMSRAIESMLKAEGMVVD--TTALGEDGLEIGKLYDYDIILLDLMLPDMDGYE 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R +R A    P++ +S        +    SG DD + KP    E++AR+ AI RR K 
Sbjct: 62  VLRRLRSARIDTPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSKG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  +TG + V  D R   V G+   L  +E  ILE L   +G+ + K Q  + +YG 
Sbjct: 122 HAQSVIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYGG 181

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            DE  E  +++  I KLRKKL     G   +++    GY +
Sbjct: 182 IDE-PELKIIDVFICKLRKKLATATGGESYIETVWGRGYVL 221


>gi|259648971|dbj|BAI41133.1| putative two-component response regulator [Lactobacillus rhamnosus
           GG]
          Length = 266

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +        +G  L      +       +   DV  ++  L  K     
Sbjct: 37  ILLVEDNREFSELLKLYLQGEGYILTRVFDGKIAMDTIKNNTFDVVLLDIMLPEK--NGF 94

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R     P+I I+     Q  +     G DD + KP     + AR+ A  RR   
Sbjct: 95  NVLKELRQTKMTPVIIITARDMDQDEVLGLSLGADDYLKKPFSLVALNARIKAQIRRTTQ 154

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     + ++     +R+ +  +          L  +E R+L+ LM + G   +K 
Sbjct: 155 YAVYGYEKMHTQSQVTFADLRLDNLNQTVYKNDRRLNLTVKEYRLLKLLMIHPGHVFSKQ 214

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+  ++G      +EN V   I +LR K+++ +    + +   +GY ++
Sbjct: 215 AIYEKVWGES-YIGDENTVNVCIKRLRDKIQD-VNQRYIRTVWGIGYVLE 262


>gi|188993478|ref|YP_001905488.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735238|emb|CAP53450.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 221

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ D           +++   +                 ++  L   G+  L
Sbjct: 3   LLLVEDDTMLADAICDGVRQQSWTIDHVGTAAAARTALVEHHYTAVLLDIGLP--GDSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R H    P+I ++    L   +   D+G DD + KP    E++ARV AI RR  
Sbjct: 61  TVIRYMRGHYDPTPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARVRAIARRSH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + V    R     G+   L   E R+L  LM   G+ V K Q+   +YG
Sbjct: 121 GRVVPLLTQGEVSVDPSSRKVTRNGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E    N++  ++ +LR+KL    G + + +    GY I
Sbjct: 181 GPSEGG-SNMIAVYVHQLRRKL----GDEAISTIYGQGYMI 216


>gi|221067477|ref|ZP_03543582.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|264678108|ref|YP_003278015.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533688|ref|ZP_07047062.1| osmolarity response regulator [Comamonas testosteroni S44]
 gi|220712500|gb|EED67868.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|262208621|gb|ACY32719.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718410|gb|EFI59393.1| osmolarity response regulator [Comamonas testosteroni S44]
          Length = 243

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +    +      D+  ++  +   GE  L
Sbjct: 11  ILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLMMP--GEDGL 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A+ + P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 69  SICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     GP       R  +  GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 129 PQEAPGAPSGDNEVVTFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 189 KLALLARGR-EFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVF 237


>gi|86147918|ref|ZP_01066223.1| transcriptional regulator CpxR [Vibrio sp. MED222]
 gi|218710833|ref|YP_002418454.1| transcriptional regulator CpxR [Vibrio splendidus LGP32]
 gi|85834345|gb|EAQ52498.1| transcriptional regulator CpxR [Vibrio sp. MED222]
 gi|218323852|emb|CAV20213.1| Transcriptional regulatory protein cpxR [Vibrio splendidus LGP32]
          Length = 229

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEK 59
            +LIDD   +          D +S EGF   E  +         +++  I   ++     
Sbjct: 4   ILLIDDDTEL-----TGLLKDILSFEGFTVSEANDGYAGLEAINDEIDLILLDVMMPRLN 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E  + +R + + P++ ++        +   + G DD + KP   RE+LAR+ AI RR 
Sbjct: 59  GMETLKKLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRT 118

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 K ++++ +   I VF   ++    G++  L   E  +L +L+ N G+ + K  +
Sbjct: 119 QINTAPKAASDKIQYQDIEVFPGKQEAYCNGQLIDLTTTEFALLSHLIQNPGQVITKEAL 178

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              + G    A +   ++ HIS LRKK+     G   + + R  GY +
Sbjct: 179 SLDVLGKRLAAFD-RAIDMHISNLRKKIPERSDGKSRIKTLRGRGYLL 225


>gi|323482946|ref|ZP_08088344.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323691625|ref|ZP_08105888.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
 gi|323403726|gb|EGA96026.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323504351|gb|EGB20150.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
          Length = 235

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 91/233 (39%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            ++I+D   +++G   L   +   +    + +  E L+  + + D+  ++  +   G   
Sbjct: 6   ILIIEDDEDIREGIRILLESEDYQIT--EAADGWEGLRLLSDDTDLVILDIMMP--GISG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L+    IR  S VP++ ++        L    +G DD + KP  + E+L RV A  RR  
Sbjct: 62  LKTCEEIRKTSFVPVLFLTAKAQESDKLIGLMAGGDDYLTKPFSYAELLGRVKAQLRRYH 121

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                     +   +  E+G  R+  D  +  V G    L   E  IL  +M    +  +
Sbjct: 122 IYRGKEDEASQPEEHFIESGRFRINEDFNEVYVDGTEVNLSDIEYHILLIMMQYPKRIFS 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              ++ +I+           V  HI  LRKK+  N      + +    GY  D
Sbjct: 182 AQNLYESIWSEPYFYSCNATVMVHIRNLRKKVEKNPQNPVSITTVWGKGYRFD 234


>gi|170736312|ref|YP_001777572.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818500|gb|ACA93082.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 221

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +     +     G +++          L    R D+  ++A L   G    
Sbjct: 3   ILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLP--GMDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR  
Sbjct: 61  TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N+    G + +    R  E+ G+   L R+E  +LE L +   +  +K ++ + ++ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +E    N VE +++++RKKL+       + + R +GY I
Sbjct: 181 FGNEPT-ANAVEQYVTRVRKKLQ--GSSVEIRTARGMGYQI 218


>gi|15644015|ref|NP_229064.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thermotoga maritima MSB8]
 gi|4981814|gb|AAD36333.1|AE001781_4 phosphate regulon transcriptional regulatory protein PhoB
           [Thermotoga maritima MSB8]
          Length = 229

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 7/218 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   ++         +G   +   SL   +   S    +V  ++      G  + E
Sbjct: 9   LIAEDDEDIRSVLKRYLETEGYECDEAESLFDLKKKLSEGTYNVLLLDLMFPD-GVAMDE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +P +  +H ++ +I IS        +   + G DD V KP + RE+LARV A+ RR+   
Sbjct: 68  IPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGKE 127

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + +F +       G+   +  +E  +L+ L     K  ++ +I + ++G  D
Sbjct: 128 QKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWG--D 185

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + V + VV+ HIS +R K+    G   + + R LGY  
Sbjct: 186 DYVSDRVVDVHISAIRSKI----GKGWIKTVRGLGYKF 219


>gi|50123028|ref|YP_052195.1| osmolarity response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|227112166|ref|ZP_03825822.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227329044|ref|ZP_03833068.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|253690259|ref|YP_003019449.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261823304|ref|YP_003261410.1| osmolarity response regulator [Pectobacterium wasabiae WPP163]
 gi|307132912|ref|YP_003884928.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Dickeya dadantii 3937]
 gi|49613554|emb|CAG77005.1| two-component osmolarity response regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|251756837|gb|ACT14913.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261607317|gb|ACX89803.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|306530441|gb|ADN00372.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Dickeya dadantii 3937]
          Length = 239

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+     E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAIIAFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|237744204|ref|ZP_04574685.1| two-component response regulator [Fusobacterium sp. 7_1]
 gi|229431433|gb|EEO41645.1| two-component response regulator [Fusobacterium sp. 7_1]
          Length = 227

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++          G  ++     E    L +    DV  ++  L  K     
Sbjct: 7   ILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGMELFTKNYYDVILLDLMLPKK--SGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +  R  +  P+I I+   S+   ++  D G +D + KP    E+LAR+    R  + 
Sbjct: 65  ELCQEFRKLNNTPIIIITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 124

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S ++       I++    +   +Q E   L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 125 SVDKQFYLEKDIKLDLSAKRVYLQEEEVNLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   EE +V+ +I+ LRKK+   +    + + R  GY   +
Sbjct: 185 -YDFDGEEKIVDVYINSLRKKID--VDNKYIHTIRGFGYMFQY 224


>gi|74318372|ref|YP_316112.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057867|gb|AAZ98307.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 235

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   +++         G ++E        + L ++   D+  ++  +   GE  L
Sbjct: 6   IYVTDDDRGIRELVAEYLTSQGYAVETAEDAAALDRLLAARLPDLVVLDWMMP--GEDGL 63

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA    P +I +S        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 64  SVARRLRARPGFPPIIMLSAKGEDIDRIIGLEVGADDYLPKPFNPRELLARIRAVLRRQP 123

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +    E       GP  V  D R     G   PL   E  +LE  + +  + +++  + 
Sbjct: 124 TAAEPTESARLVRFGPFSVNLDARMLSRDGVEIPLTGGEYELLEIFVRHANRALSRDWLM 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
             + G F+    +  ++  +++LRKK+ +       + ++R  GY
Sbjct: 184 DQLRG-FERDPFDRSIDVRVNRLRKKIEDDPTNPAYIRTQRGQGY 227


>gi|313906333|ref|ZP_07839675.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313468839|gb|EFR64199.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 243

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 20/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +          +G  +    +      L  S   D+  ++  L   G   L
Sbjct: 5   ILIVEDESKLARYVELELLHEGYEVTKSENGREALELALSNHFDLILLDIMLP--GLNGL 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +      +  P+I ++   ++   +   D+G  D + KP    E+LAR+    + 
Sbjct: 63  EVLRRLNKEQEMNPTPVILLTARDAVMDKVSGLDAGAVDYITKPFAIEELLARIRVALKL 122

Query: 119 LKVSNNRAETG--------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
            +  N  A +G               +R+          G    L  RE  +LE L+AN 
Sbjct: 123 YEARNRGASSGAVEKEKEEGVYTWNKLRLDEKRHTVHFDGHEVTLTNREFLMLETLLANM 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +++  +   + G +D   E NV++ ++  LR K+    G   + + R +GY I
Sbjct: 183 DIVLSRDTLLEKVCG-YDYIGETNVIDVYVRYLRSKIDEAYGVKMIQTVRGVGYVI 237


>gi|154247327|ref|YP_001418285.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161412|gb|ABS68628.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 223

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++          DG + +    L+       +A  ++  ++  L     + L
Sbjct: 3   ILLVEDDPVLGMAVRDQIVADGHTPDWVTRLDDATEAIHAAAFELVLLDLMLPD--GRGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  + +R    V P+I ++    +   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DFLKRLRVAGDVTPVIVLTARDQISDRIAALDAGADDYLVKPFDLFELSARIRAVGRRYA 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N     G I V    R     G    L  RE  + E  +    + ++K Q+   +Y 
Sbjct: 121 GNPNPLVSFGDIEVDLAARSVWRAGRPVVLTGREWSLFEAFVQRPHQLMSKPQLEERLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E ++ +LRKKL    G   +++ R +GY +
Sbjct: 180 SFDAEVESNTIEVYVGRLRKKL----GAQVIETVRGMGYRL 216


>gi|332639030|ref|ZP_08417893.1| two-component response regulator [Weissella cibaria KACC 11862]
          Length = 231

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       D G  +   +  +   +   S   D   ++  L   G+   
Sbjct: 8   LLVVEDDYALNDTVRETISDLG-EVTQVHDGDEGWYEIESGVYDAVVLDVMLP--GQDGF 64

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  +  +  +P++ ++    L   +  F+ G D+ + KP +  E+LAR+  + R   
Sbjct: 65  TILKKAKELYPTLPILMLTAKGELSDKMQGFNLGADEYITKPFYKEELLARLKTLLRHAG 124

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V   +   E G ++VF D     V  E   L  RE  +L YLM + G+ V K QIF  ++
Sbjct: 125 VLGQDGALEVGNVQVFIDQHRVLVNNEEISLQGREFGLLVYLMQHVGQIVTKDQIFDRLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G FD      VVE ++S LRK LRN      + + R +GY+++
Sbjct: 185 G-FDSDTSLTVVEVYMSNLRKNLRNADAQVNIKTLRNVGYTLN 226


>gi|295108183|emb|CBL22136.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 220

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++  +   G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSN-PLKLNMEELHRYDLILLDIMMP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR     P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKKIRTLVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARIHAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   +  +   L + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLMDDKELSLTKAEYEICEFLAKNRGQVFSKEQILEKVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    ++ + +HI  +R K      + P+ +   +GY  +
Sbjct: 180 FDSESNDSTIITHIKNIRSKFAE-YNYTPIKTVWGIGYKWE 219


>gi|295105976|emb|CBL03519.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 233

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A +          +G ++E   S E    + ++   D+  ++  L   G+   
Sbjct: 4   ILIVDDDADLSAIVARYLESEGFAVERAASAEEAYDVLATRAFDLVLLDINLP--GDDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
                +R  S VP++  S   S    +   D+G DD + KP   RE+LA V A+ RR + 
Sbjct: 62  AACAALRRASDVPIVFASARTSETDRIVGLDTGGDDYLPKPYSLRELLAHVNALLRRSRG 121

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 ++     GP  +          G   PL  +E  +  YLMA  G+ V+K ++ +
Sbjct: 122 RAGGEGADGALAAGPYVLDEAAGSMLKDGAAIPLSPKEFALARYLMAREGEVVSKDRLLA 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            ++G F E VE   V  H+S LR K+ +         + R  GY  D
Sbjct: 182 EVWGAFSE-VEPQTVSVHMSWLRAKVEDDPAHPAHFKTVRGRGYCFD 227


>gi|282866884|ref|ZP_06275918.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558283|gb|EFB63851.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 236

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 95/235 (40%), Gaps = 24/235 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D  ++++         G ++              + R D++ ++  +   G   + 
Sbjct: 7   LFVEDDDVIREATQLALERVGFTVTAVPDGLLGLEAFRADRPDIALLDVMVP--GLDGVS 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR   +
Sbjct: 65  LCRRIRDESTVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124

Query: 123 -----------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                            +     G + + ++G +    G    L   E R+L    +  G
Sbjct: 125 SGAGGGPEGGTGHVDGTDGVLVFGDVEIDTEGMEVRRGGAHVSLTPTEMRLLLEFSSAPG 184

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +++ ++   ++  +    +  VV+ H+ +LR K+    G D +++ R  GY +
Sbjct: 185 TVLSRDRLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 234


>gi|261211760|ref|ZP_05926047.1| two-component system response regulator QseB [Vibrio sp. RC341]
 gi|262404056|ref|ZP_06080611.1| two-component system response regulator QseB [Vibrio sp. RC586]
 gi|260839110|gb|EEX65742.1| two-component system response regulator QseB [Vibrio sp. RC341]
 gi|262349088|gb|EEY98226.1| two-component system response regulator QseB [Vibrio sp. RC586]
          Length = 219

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  ++     G   E         +  ++   DV  ++  L       L
Sbjct: 3   ILVVEDDVQLGNQILSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       +G+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I +LRKK+      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKI----APDVIKTVRGLGYQL 216


>gi|281421933|ref|ZP_06252932.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri
           DSM 18205]
 gi|281403987|gb|EFB34667.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri
           DSM 18205]
          Length = 231

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 100/229 (43%), Gaps = 15/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +E  NS E E      A  D+  ++  +   G    
Sbjct: 8   ILVVDDEQDLCEILKFNLETEGYEVETANSAE-EALEMDIASFDLLLLDVMM--GGMSGF 64

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L + ++ +     VP+I ++   +   T+  F+ G DD ++KP   RE++ RV A+ RR
Sbjct: 65  QLAKQLKGNPMTANVPIIFLTARDTENDTVTGFNIGADDYISKPFSIREVMVRVRAVLRR 124

Query: 119 LKVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +       +++  D +   + GE  P  + E  +L   +  RGK  ++ +
Sbjct: 125 TAEQAGDADESKIINYQGLQLNLDKKTVSIDGEAIPFTKTEFELLRLFLEERGKVFSRQE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   ++   D  V +  V+ +I+++RKK+        + ++   GY  D
Sbjct: 185 LIDRVWPK-DVMVLDRTVDVNITRMRKKIGKF--AKCIVTRLGFGYYFD 230


>gi|70725698|ref|YP_252612.1| hypothetical protein SH0697 [Staphylococcus haemolyticus JCSC1435]
 gi|123660954|sp|Q4L8L9|HSSR_STAHJ RecName: Full=Heme response regulator hssR
 gi|68446422|dbj|BAE04006.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 224

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 91/219 (41%), Gaps = 4/219 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +              ++       E  +   A   V      ++  G    E
Sbjct: 5   LIVDDDYKILHYVSQHLEAA--QIQTVTQASGESAIAYLANNKVDIAVVDIMMTGMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L ++++    +P+I ++   +L      F SG DD V KP   +E+L R+ A+ RR ++ 
Sbjct: 63  LCQLLKNDYDLPVIMLTARDALSDKERAFVSGTDDYVTKPFEVKELLFRIQAVLRRYQIN 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S +  + G + +  +  +  V  +   LP +E ++L  L         +  +   I+G F
Sbjct: 123 SQDIIKLGNVTLIQEYMELSVDSKNVNLPTKEFQLLFLLCGQPKHIFTRDTLIERIWG-F 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   +E  ++ HI +LR +L        + + R  GY +
Sbjct: 182 DYEGDERTIDVHIKRLRHRLNQLKATIEIQTVRGQGYRV 220


>gi|91791603|ref|YP_561254.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91713605|gb|ABE53531.1| response regulator receiver [Shewanella denitrificans OS217]
          Length = 221

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +     F          +  +       + +     ++  L   G+  +
Sbjct: 5   ILIVEDEIKLANLLADYFKQTEYQPHLIHHGDEVISWVKTHQPQAILLDIMLP--GKNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR  S VP++ ++        L   + G DD + KP   RE++ARV A+ RR  V
Sbjct: 63  DLCKEIRQFSNVPILMVTAKVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRGLV 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             NR +T  +++               L   E ++L+ L     +   + Q+   +Y   
Sbjct: 123 IENRDDT--LQLDEHRFMVSFHQRGVSLTAVEFQLLKPLATKPERIFTREQLMQNMYSDH 180

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              V    ++SHI KLRKKL +   G D + S    GY +
Sbjct: 181 -RIVNYRTIDSHIKKLRKKLADISQGKDWIQSVYGAGYRL 219


>gi|241762014|ref|ZP_04760098.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373480|gb|EER63067.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 196

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 8/183 (4%)

Query: 44  EDVSAIEAFLIGKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100
            D+  ++  +  +G   +E+ R +R     + +P+I ++        +   ++G DD V 
Sbjct: 13  PDIMLLDWMV--EGTSGIEVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVT 70

Query: 101 KPIHHREILARVAAIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158
           KP   RE++ARV A+ RR++   S  +     I +       +  G    +   E R+L 
Sbjct: 71  KPFSPRELVARVLAVLRRIRPALSKEQLTYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLR 130

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +LM    +  ++ ++   I+G  D  +E   V+ HI +LRK L      D + + R  GY
Sbjct: 131 HLMEYPRRVFSREKLLDYIWGQ-DSDIELRTVDVHIRRLRKALNRDGLPDLIRTVRSAGY 189

Query: 219 SID 221
           ++D
Sbjct: 190 ALD 192


>gi|190350980|gb|ACE75886.1| CovR [Streptococcus pyogenes]
          Length = 228

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+L R+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLVRIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|160937479|ref|ZP_02084840.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439548|gb|EDP17298.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC
           BAA-613]
          Length = 233

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 95/226 (42%), Gaps = 6/226 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   ++        ++G  +E F   +       ++  D+  ++  +   G    
Sbjct: 5   IYVADDELHIRTLIQTFLVNEGYEVETFEDGKSLFEAFHASCPDLIILDIMMP--GMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            L   IR  S+VP+I +S   +    +     G DD + KP    E++ARV A++RR   
Sbjct: 63  ALCTAIRRESRVPIIIVSAKDAPMDRVTGITLGSDDYMVKPFLPLELVARVKALFRRAGY 122

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +        + +    R   V G  F +   E   L+YLM  RG+ V+K  +   +
Sbjct: 123 IRQDAGETLVCANLSLDPRSRCMTVDGAHFSVTPTEFAFLQYLMERRGEAVSKQVLLKEV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           + L D  ++  V +  + +LR+K R       +++    G+ ++ +
Sbjct: 183 WELPDYDLDTRVADDLVKRLRRKFREAGCRAAIETVWGYGFRLEED 228


>gi|145300939|ref|YP_001143780.1| two-component system osmolarity response regulator OmpR [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853711|gb|ABO92032.1| two-component system osmolarity response regulator OmpR [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 239

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G  + G  + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLP--GEDGLS 65

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R A +Q+P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  V
Sbjct: 66  ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 125

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +      G  ++    R+    GE   L   E  +L+ L+++  + +++ ++
Sbjct: 126 ELPGAPSTAEKMVTFGSYQLNLATRELSRDGEPVALTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +   G  +    E  ++  +S+LR+ L         + +   LGY  
Sbjct: 186 MNLARGR-EYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVF 232


>gi|104780165|ref|YP_606663.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
 gi|95109152|emb|CAK13849.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
          Length = 223

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       V  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLP--GLDGYG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    ++  +     G DD + KP    E++AR+ A+ RR  + 
Sbjct: 62  VLRALRARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSAIH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + +   + +    R     G+   L  +E  +L  L   +G+ ++KT I   ++ + 
Sbjct: 122 EPLQIQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFDNKLLHTIRGMGYVLE 220


>gi|289425716|ref|ZP_06427471.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289153822|gb|EFD02528.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
          Length = 243

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D   +          +G  +   NS         + R DV  ++  L       LE
Sbjct: 21  LAVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDF--DGLE 78

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR     V  + ++   +    +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 79  VMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSGA 138

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +  +       G + +  D R+    GE   L   E  +L Y M N  + ++K QI   +
Sbjct: 139 TEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDRV 198

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LRKK+ ++     + + R  GY +
Sbjct: 199 WN-YDFRGQANVVELYISYLRKKI-DRGHKPMIHTMRGAGYVL 239


>gi|66044378|ref|YP_234219.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255085|gb|AAY36181.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|330969196|gb|EGH69262.1| heavy metal response regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 225

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLP--GLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTAREQIDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPIQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|93005532|ref|YP_579969.1| two component heavy metal response transcriptional regulator
           [Psychrobacter cryohalolentis K5]
 gi|92393210|gb|ABE74485.1| two component heavy metal response transcriptional regulator,
           winged helix family [Psychrobacter cryohalolentis K5]
          Length = 238

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       + G  ++ + +         +    V  ++  L        E
Sbjct: 4   LLVEDEQKLGEYIKKGLTEAGFIVDHYMTGLDGYHALMTEEFSVVLMDVMLPDV--SGFE 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L +  RA     P++ ++    L   +   + G DD + KP    E++ R+ ++ RR   
Sbjct: 62  LIQRYRAAEKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRANQ 121

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+       T  +++    R       +  L  +E  +L++ +  +G+ + +T I S ++
Sbjct: 122 SDYKSTVIHTADLKMDIAKRTVYRGDTLIKLTAKEFALLQFFLERQGEVLPRTVIASQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 182 DI-NFDSDTNVIDVAIRRLRIKIDDGFDTKLIHTVRGMGYRLE 223


>gi|319442833|ref|ZP_07991989.1| two-component system response regulator MtrA [Corynebacterium
           variabile DSM 44702]
          Length = 224

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 98/220 (44%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G S       +  E ++++  +    I   L+  G   +
Sbjct: 5   ILVVDDDPAISEMLTMVLQGEGFS--TVTVGDGAEAVEAARTQHPDLILLDLMLPGMNGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           ++ R +R  S VP++ ++        +   +SG DD V KP   +E++ARV A  RR+ +
Sbjct: 63  DVCRAVRDFSAVPIVMLTAKTDTVDVVLGLESGADDYVPKPFKPKELVARVRARLRRIPE 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + + A  G + +   G      G V  L   E  +L  L +   +  ++ ++   ++G 
Sbjct: 123 ETPDTATVGDVTIDFGGHQVTRDGAVIQLTPIEFELLGTLASRPRQVFSREELLERVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           + +  +  +V  HI +LR K+  +      + + R +GY 
Sbjct: 182 YRKNSDTRLVNVHIQRLRSKVEKDPDNPVIIQTVRGVGYK 221


>gi|297517136|ref|ZP_06935522.1| osmolarity response regulator [Escherichia coli OP50]
 gi|242378928|emb|CAQ33726.1| ompR [Escherichia coli BL21(DE3)]
 gi|253979390|gb|ACT45060.1| osmolarity response regulator [Escherichia coli BL21(DE3)]
          Length = 239

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|229194660|ref|ZP_04321454.1| hypothetical protein bcere0001_2480 [Bacillus cereus m1293]
 gi|228588818|gb|EEK46842.1| hypothetical protein bcere0001_2480 [Bacillus cereus m1293]
          Length = 209

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 10/200 (5%)

Query: 30  NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89
            ++  +E LQ   + + + +   L+      +E+ R +R  + VP + ++        + 
Sbjct: 4   TAINDDEALQLFNQNNYNLVILDLMMPKVDGIEVCRKLRDKTNVPRLMLTAKDHEVDKIL 63

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRRLKV--------SNNRAETGPIRVFSDGRDPE 141
               G DD + KP    E++ARV A+ RR  V                 + +  +     
Sbjct: 64  GLSIGADDYITKPFSIHEVIARVKALMRRFLVLGSDANIQEKTTLTFKGLLIDLNIYTVH 123

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              E   L  +E  +L++  +N G+   KTQ+F  ++   +   ++N V  HI KLRKK+
Sbjct: 124 TNKEEINLTGKELELLKFFTSNPGQVFTKTQLFRNVWD-DNYIEDDNTVMVHIRKLRKKI 182

Query: 202 R-NKLGFDPVDSKRFLGYSI 220
             +      + +   +GY  
Sbjct: 183 EVDPSNPKFIQTVWGIGYKF 202


>gi|218130473|ref|ZP_03459277.1| hypothetical protein BACEGG_02062 [Bacteroides eggerthii DSM 20697]
 gi|217987352|gb|EEC53682.1| hypothetical protein BACEGG_02062 [Bacteroides eggerthii DSM 20697]
          Length = 229

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 103/225 (45%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  ++  NS E    L  SA   +          G K+ 
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYVVDTANSAEEALKLDISAYNLLLLDVMMGEISGFKMA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE+ ARV A+ RR + 
Sbjct: 66  SMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRRTQQ 125

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +  +     + +    +   + GE  PL ++E  IL  L+ N+G+  ++  I   
Sbjct: 126 GERERAPEQIVYESLVLDIIKKKVSIDGEEAPLTKKEFEILLLLLQNKGRVFSREDILGR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+   +  V +  ++ +I++LRKK+   +    + ++   GY  +
Sbjct: 186 IW-SDEVYVLDRTIDVNITRLRKKIG--IYGKCIVTRLGYGYCFE 227


>gi|295699191|ref|YP_003607084.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438404|gb|ADG17573.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 228

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D   +   + G  ++     E    L +    DV  ++  L  +     
Sbjct: 3   LLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGTHLATEFDYDVIVLDVMLPKR--DGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R     P+I ++    +   +     G DD + KP    E++ R+ A+ RR + 
Sbjct: 61  SVLKALRMRKSTPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTRS 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + V   GR     G    L  +E ++L  L   +G  ++KT I   ++ +
Sbjct: 121 QESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 -NFDSHTNVVETAIKRLRAKLDGPFPSKLLHTVRGMGYVLEV 221


>gi|237714601|ref|ZP_04545082.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262406466|ref|ZP_06083015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294647765|ref|ZP_06725320.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294808589|ref|ZP_06767331.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445370|gb|EEO51161.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262355169|gb|EEZ04260.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292636902|gb|EFF55365.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294444213|gb|EFG12938.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295083997|emb|CBK65520.1| two component transcriptional regulator, winged helix family
           [Bacteroides xylanisolvens XB1A]
          Length = 225

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G ++   +       +      D+  ++  +       L
Sbjct: 5   ILLVEDEINIASFIERGLKEFGHTVTVCHDGNAGWKILQDEPFDLLILDIIMP--KINGL 62

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL R+ R     Q P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 63  ELCRLYRQTFGYQSPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRN 122

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K V++N      + +  + R  +       L  +E R+LEY M ++G  +++  +   ++
Sbjct: 123 KEVTSNLLTCDNLILDCNTRRAKRGNIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +     N+V+ +++ LR K+        + +   LGY ++
Sbjct: 183 DK-NFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 224


>gi|158421790|ref|YP_001523082.1| response regulator [Azorhizobium caulinodans ORS 571]
 gi|158328679|dbj|BAF86164.1| response regulator [Azorhizobium caulinodans ORS 571]
          Length = 245

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++       G +G            + + +  R D+  ++  L   GE  L
Sbjct: 10  LLIVEDDREIRSLLADFLGREGYDTRLAADGRAMDAILAGIRPDLVILDIMLP--GEDGL 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA   VP++ ++        +   + G DD + KP + RE+LAR+ AI RR++ 
Sbjct: 68  SLCRRLRAQGDVPVLMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRAILRRVQA 127

Query: 122 SNNRAE--------TGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +    E         G +    D R      G    L   E  +L   +    + +++ Q
Sbjct: 128 AARVGEDPRRQDIAFGGLIADLDARSVRTPDGIALDLTSAEFDLLACFLERPRRVLSRDQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220
           +     G   +  +   ++  +S+LR++L          + + R  GY  
Sbjct: 188 LLDWTRGRSADPFD-RTIDVAVSRLRRRLSLVAPEAAQLIKTVRNGGYIF 236


>gi|89074900|ref|ZP_01161350.1| hypothetical DNA-binding response regulator [Photobacterium sp.
           SKA34]
 gi|89049297|gb|EAR54860.1| hypothetical DNA-binding response regulator [Photobacterium sp.
           SKA34]
          Length = 225

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D    ++       + G  ++          + +S    +  ++  L       L+
Sbjct: 4   LVIEDDVTTREFIAQGLREHGFVVDEAEDGHQGLMMATSCEYQLIILDRMLPI--LDGLK 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA  ++ P++ +S   S++  +    +G DD + KP    E++AR   + +R + 
Sbjct: 62  VLAALRATENETPILILSAMDSVEDRVAGLTAGSDDYLTKPFALAELIARANILVKRHQS 121

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S   ++      +R+            +  L ++E  +L+YLM +    V++  +F +++
Sbjct: 122 SVNISSEYSYDDLRLDIKSHRVWRGSRLLNLQQKEFLLLQYLMEHAESVVSRMSLFESVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HI+ LRKKL        + + R  GY +
Sbjct: 182 -SYHFDPKTNVIDVHIANLRKKLEEGGETSLIHTVRGAGYVL 222


>gi|289705357|ref|ZP_06501753.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557872|gb|EFD51167.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 254

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 100/222 (45%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D     F   G  +   +       L ++ R D++ ++  L       L+
Sbjct: 34  LVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVELGAAGRPDLAILDVMLPD--MDGLD 91

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RAH S++P + ++   + +  +    +G DD V KP    E+L R   + +R  V
Sbjct: 92  VLERLRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLVQRSGV 151

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + + +   +    G+   L   +  +L++LMAN    ++K +I   ++
Sbjct: 152 VSGGSEVLVVGDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERILQDVW 211

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N+VE +IS LRKK+        + + R  GY I
Sbjct: 212 G-YDFGGRANIVELYISYLRKKIDADRDP-MIHTVRGAGYVI 251


>gi|237728724|ref|ZP_04559205.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
 gi|226909346|gb|EEH95264.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
          Length = 244

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 12  ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 70  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 129

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 130 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 190 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 237


>gi|170744192|ref|YP_001772847.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198466|gb|ACA20413.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 221

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +  G +A     G++ +     E    L  S    +  ++  L   G    E
Sbjct: 4   LVVEDDAALARGLVASLRLAGLAADHEADGEDAARLALSEPYSLIVLDIGLP--GLSGFE 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA  S VP++ ++   ++   +   D G DD + KP    E  ARV A  RR + 
Sbjct: 62  VLRRIRAAGSTVPVLILTARDAVADRVRGLDLGADDYLLKPFAPAEFEARVRAQIRRGQG 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N     G + +        + GE   L RRER +L  LMA  G+ V K ++ + ++G 
Sbjct: 122 QPNPVLRCGTLALDRSTGAVTLDGEPLALRRRERAVLTVLMAKAGQVVPKERLNNEVFG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD+ V  N +E +I++LRKKL+ K     + + R LGY +D
Sbjct: 181 FDDEVAPNALELYIARLRKKLQPKGPE--IRTIRGLGYLLD 219


>gi|160884401|ref|ZP_02065404.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
 gi|156110140|gb|EDO11885.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
          Length = 224

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G S+   +       +      D+  ++  +       L
Sbjct: 4   ILLVEDEINIASFIERGLKEFGHSVTVCHDGNTGWKILQDEPFDLLILDIIMP--KINGL 61

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL R+ R     Q+P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 62  ELCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRN 121

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K V +N      + +  + R  +       L  +E R+LEY M ++G  +++  +   ++
Sbjct: 122 KEVPSNLLTCDNLILDCNTRKAKRGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +     N+V+ +++ LR K+        + +   LGY ++
Sbjct: 182 DK-NFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 223


>gi|91199718|emb|CAI78073.1| putative two-component system regulator [Streptomyces ambofaciens
           ATCC 23877]
 gi|96771765|emb|CAI78347.1| putative two-component system regulator [Streptomyces ambofaciens
           ATCC 23877]
 gi|114049989|emb|CAK51006.1| putative two-component system regulator [Streptomyces ambofaciens]
 gi|114050211|emb|CAK51244.1| putative two-component system regulator [Streptomyces ambofaciens]
 gi|117164310|emb|CAJ87852.1| putative two-component system regulator [Streptomyces ambofaciens
           ATCC 23877]
 gi|126347422|emb|CAJ89130.1| putative two-component system regulator [Streptomyces ambofaciens
           ATCC 23877]
          Length = 253

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 13/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D      D  +      G            + LQ+ A  D+  +   L       L
Sbjct: 39  ILVVDADVDPADSLVTQLRRYGHEPLAVQC--GSQALQAHADADLVLLALELPD--LDGL 94

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IRA S+VP++ ++   S    +    +G DD V KP   RE++AR+ A+ RR   
Sbjct: 95  EVCRAIRAVSRVPVVIVTARQSELDCVLGLQAGADDYVTKPYGLRELMARIEAVMRRAHW 154

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G + +  + R+  V G   PL R+E  +L  L ++    + + Q+   ++
Sbjct: 155 QPAARRYIRRGRLHIDVNSREVTVDGSGIPLTRKEFDLLCLLASHPDTVIPRKQLLKQVW 214

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G   ++  +  V++H+S LR KL    G   + + R +G+ +
Sbjct: 215 G---DSWSQRTVDTHVSSLRGKL---GGSGWIVTVRGVGFKL 250


>gi|109896556|ref|YP_659811.1| osmolarity response regulator [Pseudoalteromonas atlantica T6c]
 gi|332304523|ref|YP_004432374.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|109698837|gb|ABG38757.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
 gi|332171852|gb|AEE21106.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 240

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + +       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLVEQGYQVRAAANAEQMDRMLERENFHLMVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + R +R   +++P++ ++        +   + G DD + KP + RE+LARV A+ RR  
Sbjct: 66  SICRRLRQKENEIPIVMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARVKAVLRRKV 125

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    +    E G  ++    R+   +G    L   E  +L+ L+ +  + +++ +
Sbjct: 126 VEAPGAPSHAEQIVEFGKFKLNLGTREMSSEGTPMTLTSGEFAVLKSLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVF 233


>gi|332992484|gb|AEF02539.1| response regulator [Alteromonas sp. SN2]
          Length = 221

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +           +++              ++ D+  ++  L  +    L
Sbjct: 3   ILLVEDDKPLSNALKVSLRKANYTVDCVYDGASAISTLRPSQNDIVILDLGLPDQ--DGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  + V P++ ++        +   D+G DD + KP    E+LAR+  + RRL 
Sbjct: 61  IVLKSIRKTNPVLPVLILTARDKTSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S+        + + +      +  ++  LPRRE  +L+ L+ N G+ ++K Q+ S +Y 
Sbjct: 121 TSSESVITVQNVSLDTKHHTLTIDSDIVHLPRRELMLLKALIENAGRILSKHQLESKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E V  N +E HIS LRKK+      + + + R +GY I
Sbjct: 180 EWGEEVSSNTIEVHISNLRKKMPE----NFIRTIRGVGYCI 216


>gi|269962482|ref|ZP_06176831.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3]
 gi|269832778|gb|EEZ86888.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3]
          Length = 229

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E    L  ++  D+  ++  +       +
Sbjct: 4   ILLIDDDTELTSLLKEVLSFEGYEVSEANDGEA-GLLAINSEIDLVLLDVMMP--KLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R + + P++ ++        +   + G DD + KP   RE+LAR+ AI RR   
Sbjct: 61  ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSS 120

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          E   I+++   ++   +  +  L   E  +L + + N G+ + K  +  
Sbjct: 121 TQKNTKNSDCIEYREIKLYPGKQEAYCEEALLDLTTTEFALLTHFVQNPGQVLTKETLSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225


>gi|161506627|ref|YP_001573748.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|189348849|ref|YP_001942044.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|160346865|gb|ABX19948.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
 gi|189338987|dbj|BAG48054.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 223

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 97/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLTEASYTVDVAENGKIGLFLALHENFDLVVLDVMLPE--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +RA  Q P++ ++   +++  +   + G DD ++KP  + E LAR+ ++ RR   
Sbjct: 61  EVLKRLRAEKQTPVLMLTAREAIEDKVAGLELGADDYLHKPFAYAEFLARIRSLLRRAPR 120

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S  +      + +    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 SIRDILLVADMEIDLLKRRVRRGDNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKVDNAYDKKLIHTIRGMGYVLE 220


>gi|325921831|ref|ZP_08183648.1| two component transcriptional regulator, winged helix family
           [Xanthomonas gardneri ATCC 19865]
 gi|325547708|gb|EGD18745.1| two component transcriptional regulator, winged helix family
           [Xanthomonas gardneri ATCC 19865]
          Length = 221

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +   A       +++   S    + +    R     ++  L   GE  L
Sbjct: 3   LLLVEDDTMLANAICAGVRQQSWTIDHVGSANAAKTVLVDHRYTAVLLDIGLP--GESGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R      P+I ++    L   +   D+G DD + KP    E++AR+ AI RR +
Sbjct: 61  TVIRFMRGQYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAITRRSQ 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + V    R     G+   L   E R+L  LM   G+ V K Q+   +YG
Sbjct: 121 GRVVPLLTQGDVCVDPSSRKVTRDGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E    N++  ++ +LR+KL    G + + +    GY +
Sbjct: 181 GPSEGG-SNMIAVYVHQLRRKL----GDELISTIYGQGYMV 216


>gi|123444180|ref|YP_001008150.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|157372853|ref|YP_001480842.1| osmolarity response regulator [Serratia proteamaculans 568]
 gi|238751147|ref|ZP_04612642.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
           43380]
 gi|238788973|ref|ZP_04632763.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
           ATCC 33641]
 gi|238792875|ref|ZP_04636505.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
           29909]
 gi|238797301|ref|ZP_04640802.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
           43969]
 gi|270264440|ref|ZP_06192706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|293393393|ref|ZP_06637705.1| response regulator OmpR [Serratia odorifera DSM 4582]
 gi|332163326|ref|YP_004299903.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122091141|emb|CAL14024.1| transcriptional regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|157324617|gb|ABV43714.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
 gi|238710625|gb|EEQ02848.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
           43380]
 gi|238718938|gb|EEQ10753.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
           43969]
 gi|238723000|gb|EEQ14650.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
           ATCC 33641]
 gi|238727729|gb|EEQ19253.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
           29909]
 gi|270041576|gb|EFA14674.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|291424130|gb|EFE97347.1| response regulator OmpR [Serratia odorifera DSM 4582]
 gi|318607817|emb|CBY29315.1| two-component system response regulator OmpR [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667556|gb|ADZ44200.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862979|emb|CBX73112.1| transcriptional regulatory protein ompR [Yersinia enterocolitica
           W22703]
          Length = 239

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|330827879|ref|YP_004390831.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328803015|gb|AEB48214.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G  + G  + E  + L +     +  ++  L   GE  L 
Sbjct: 9   LVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLP--GEDGLS 66

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R A +Q+P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  V
Sbjct: 67  ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 126

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +      G  ++    R+    GE   L   E  +L+ L+++  + +++ ++
Sbjct: 127 ELPGAPSAAEKVVNFGAFQLNLATRELSRDGEPMALTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +   G  +    E  ++  +S+LR+ L         + +   LGY  
Sbjct: 187 MNLARGR-EYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVF 233


>gi|262403606|ref|ZP_06080164.1| transcriptional regulator [Vibrio sp. RC586]
 gi|262350110|gb|EEY99245.1| transcriptional regulator [Vibrio sp. RC586]
          Length = 218

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 101/221 (45%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   +  ++    +  Q   + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--DCLHAETIADVKQHWDKADLVILDRQLPD-GDSVQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
            L    +    +P+I ++   +++  +   D+G +D + KP    E+ AR+ A  R    
Sbjct: 62  HLVDW-KNIKDIPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRSPDN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +++  T  + +    R+    GE   L R E  +L +L +N G+   + ++   ++G
Sbjct: 121 GQDDSKVVTANLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDELLDHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 -YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 216


>gi|255525139|ref|ZP_05392083.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188106|ref|ZP_06856498.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511193|gb|EET87489.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047232|gb|EFG86674.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 235

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 102/236 (43%), Gaps = 25/236 (10%)

Query: 3   VLIDDRALV---------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL 53
           ++IDD   +         K+   A+    G+  EG   ++     ++ ++  +S +   +
Sbjct: 5   LIIDDDKELCTLMKKCVEKENLSAIIAHGGI--EGIRLVD-----ENKSKGSLSLVILDV 57

Query: 54  IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           +       ++ +IIR  S +P++ ++        +     G DD + KP    E++ARV 
Sbjct: 58  MMPDINGFQVLKIIRETSNIPVLMLTAKSDEDDKVSGLRLGADDYLTKPFSISELMARVN 117

Query: 114 AIYRRLKVSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
           ++ RR    N              + +    R   V   +  L  +E  +L +L +N+G+
Sbjct: 118 SLIRRYTTLNPTFPMETDLIALQGMLIDKVNRIVSVNDILVELTGKEFDLLSFLASNKGR 177

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
              K QI++ ++   + + +++ + S ISKLRKK+         + + R +GY  +
Sbjct: 178 VFTKKQIYTQVW-EDEYSFDDSNIMSFISKLRKKIEPDPDRPFYILTVRGVGYRFN 232


>gi|301024924|ref|ZP_07188536.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300396299|gb|EFJ79837.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
          Length = 229

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQICWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDTHIKTLRAKLRAINPDLSPINTHRSMGYSL 226


>gi|255102513|ref|ZP_05331490.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
          Length = 237

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L+DD   + D    +  +DG    ++ +N L+    L   A  DV  ++  L      
Sbjct: 9   ILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAIS-LCKIACPDVVILDIMLPD--ID 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ + IR  S   ++ +S        +    SG DD + KP   REI  RV A  RR 
Sbjct: 66  GIEVCKKIREFSYCSILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIAFRVKAQLRRQ 125

Query: 120 KVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +        +   + G I +  +G           L  RE  +L Y+  N  K + K ++
Sbjct: 126 QYQSIVPSDSEVIKIGDITIDIEGNRVYKDRNEIELTGREYHLLSYMAKNVNKIIGKERL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +  ++G++  ++ +N +  HI  +R+K+ +      +  + + LGY +
Sbjct: 186 YEQVWGVY-SSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKL 232


>gi|206559345|ref|YP_002230106.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198035383|emb|CAR51259.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 242

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKSGIDADTALSMQTFDLLILDLGLP--KMSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRISTVRGLGYCLE 219


>gi|56750160|ref|YP_170861.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|56685119|dbj|BAD78341.1| two-component response regulator [Synechococcus elongatus PCC 6301]
          Length = 229

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      +   +G  ++  +  +  E L +    D+  ++  L  +    L
Sbjct: 3   ILLVDDEEALTAPPHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPER--SGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R    QVP++ ++   ++   +   D+G DD + KP   +E+LARV A+ RR  
Sbjct: 61  DLCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRSP 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R   G + + +  +    Q     L  +E ++L  LM + G+ V+  ++ + 
Sbjct: 121 RQETSEAPRLAGGDLELDTPNQLAYRQARRIELSEKETQLLAVLMQHPGQLVSHQELQAQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  +     NV+ + I  LR+KL        + S    GY  
Sbjct: 181 VWGSAN-PPSSNVLAAQIRLLRRKLEAPGETPLIFSVYGKGYRF 223


>gi|13473757|ref|NP_105325.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14024508|dbj|BAB51111.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 227

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D  +    + G   +   +     +  +S   DV   +  +   G   L
Sbjct: 3   LLLVEDDQKTADYIVRGLTEAGHVCDLLRNGHDALFAATSGSYDVIVADRMIP--GLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + +  RA   + P I ++    +   ++  ++G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  SMVKAARAAGVRTPAIFLTSIGGIDDRVEGLEAGGDDYLVKPFAFSELLARINALGRRPA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    R    QG+   L  RE  +LE LM   G+ + +T +   ++
Sbjct: 121 AQEQKTVLRVADLEMDLIMRRVTRQGQPIDLQPREFSLLEVLMRGEGRVITRTMLLERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F    + +VVE+HIS+LR K+        + + R  GYS+
Sbjct: 181 D-FHFDPKTSVVETHISRLRAKVDKPFEAQLIHTIRNTGYSL 221


>gi|313116090|ref|ZP_07801513.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310621596|gb|EFQ05128.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 227

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
            +L++D   +         ++G  +    +G + L+         + D+  ++  L  + 
Sbjct: 3   ILLVEDDLEISKLLAEFLQENGYEVFCQYDGLHVLDC----LRENKIDLILLDIMLPYRN 58

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
                +   +R  S VP+I IS   + Q  +D    G DD + KP    E+LAR+ +  R
Sbjct: 59  GD--TVLTAVRECSTVPIIVISAKGTTQNKVDLLRLGADDYITKPFDMEEVLARIESNLR 116

Query: 118 RLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R++   +       G + +  +     +QG    L  +E  ILE LM    K  +K  +F
Sbjct: 117 RVQFQKDNPTHLRHGDLVLDLNDNTAFLQGSELTLTAKEFAILELLMKYPDKIFSKANLF 176

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            +++   +   E+N +  HIS LR KL+      D +D+   +GY +
Sbjct: 177 QSVWNA-EYISEDNTLNVHISNLRNKLKAVCPDKDFIDTVWGIGYRL 222


>gi|254391808|ref|ZP_05007003.1| two-component system regulator [Streptomyces clavuligerus ATCC
           27064]
 gi|326443845|ref|ZP_08218579.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705490|gb|EDY51302.1| two-component system regulator [Streptomyces clavuligerus ATCC
           27064]
          Length = 233

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 92/232 (39%), Gaps = 19/232 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE------DVSAIEAFLIG 55
            +L++D   V     A+ G  G  +    + E        A         V  ++  L  
Sbjct: 3   LLLVEDDDHVAAALSAVLGRHGFQVVHARNGEEALRAVLPAAHPGRPPFGVILLDLGLPD 62

Query: 56  KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           +     ++   +R  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+
Sbjct: 63  Q--DGYQVCGKLRKITSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAV 120

Query: 116 YRRLKVSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
            RR    ++           GP+ +    R   V G    L R+E  +L  L    G   
Sbjct: 121 SRRGGPGDDAPAPAGQALRLGPMTIELSTRRVSVDGTEVQLTRKEFDLLALLAQRPGVVF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + QI S ++    E      +E H++ LR KLR       V++ R +GY +
Sbjct: 181 RREQIISEVWRTSWEGTG-RTLEVHVASLRAKLRMPA---LVETVRGVGYRL 228


>gi|170757016|ref|YP_001782974.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122228|gb|ACA46064.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    S   EE L     E  + I   ++       
Sbjct: 5   ILIVDDDKTIVEFLQIFLIKEGYEVRI--SYNGEEALDKIRSEQFNLILMDIMMPKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  + +P+I ++   S Q  +  F SG DD + KP    E+  RV+AI +R+  
Sbjct: 63  EAIKRIRKLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S      +  +   + +         +     L  +E  IL  L  N+G+    ++I+  
Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++G  +    +N + +HI  LR+KL + +     + +   +GY I+
Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIE 227


>gi|160895287|ref|ZP_02076058.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50]
 gi|156862980|gb|EDO56411.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50]
          Length = 229

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +           G ++  + +   +E L+     D+  +   ++      +
Sbjct: 4   ILICDDEKDIVSALKIYLKTSGYNI--YEAYNGKEALEQIKEHDIHLVLMDIMMPEMDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  + +P+I ++        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  TAMLKIREETNLPVILLTAKSEDTDKILGLEVGADDYITKPFNPVEVIARVKSQLRRYMQ 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               ++  +    G I +  + +   V G++  L   E  IL  LM + G+  +   I+ 
Sbjct: 122 LGSGQIKKDAIVIGGIELNDNSKQVTVDGKLVSLTPTEYDILRLLMEHPGQVFSPRDIYK 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
            ++        E  V  HI  LR+K+  N      +      GY +++
Sbjct: 182 EVWKET-PLGAEGSVAVHIRHLREKIEINPGEPRYIKVIWGRGYKMEY 228


>gi|318079812|ref|ZP_07987144.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 227

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V+          G  +    S E      ++A  DV  ++  L   G   LE
Sbjct: 5   LLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWMLP--GMDGLE 62

Query: 63  LPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + R +R    + VPL+ ++        +   ++G DD V KP+  R + AR+ A+ RRL 
Sbjct: 63  VCRRLRTPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLRRLD 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      GP+ +   G     +G   PL   E R+L  L A+ G+ +++ Q+  A++
Sbjct: 123 TPGTPPPETHGPLTIDRTGLRVAHEGAPVPLAPSELRLLLTLSASPGQVLSRQQLLEAVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  +  +V++ + +LR KL      D V++ R  GY  
Sbjct: 183 -EHSYHGDIRLVDACVKRLRNKL--AAAADRVETVRGFGYRF 221


>gi|295089945|emb|CBK76052.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 231

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + +  E L+     +V+ +   ++  G   +
Sbjct: 4   ILVCDDDRQIVEAIDIYLTGEGFEV--IKAYDGLEALELLKTHEVNLMIVDVMMPGLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                +R  S +P+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  RTTLKVRETSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 121

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +  +   + G +++  + ++  V GE+  L   E  IL  L+ N GK  +  QI
Sbjct: 122 LGNMNTQSDSRVYKCGGLQINDENKEVLVDGELIKLTPIEYNILLLLVKNAGKVFSIDQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 182 YEEIWNE-EAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIE 229


>gi|259418488|ref|ZP_05742406.1| transcriptional activator protein CopR [Silicibacter sp. TrichCH4B]
 gi|259345883|gb|EEW57727.1| transcriptional activator protein CopR [Silicibacter sp. TrichCH4B]
          Length = 223

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D     D   +     G +++  ++ +           DV   +  L       L 
Sbjct: 4   LVVEDDLETADYIASSLKAQGHAVDHCDNGKDGFLNALDNDYDVMVFDRMLPR--LDGLT 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           L + +R A  + P++ +S    +   ++   +G DD + KP    E+ AR+ A+ RR  L
Sbjct: 62  LIKSVRGAGIETPILFLSAMDGINDRVEGLLAGSDDYLVKPFSFHELSARLVALVRRPPL 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K          + +    R     G    L  RE  +LEYL+ N  + V +T +  A++ 
Sbjct: 122 KTEETVLRVADLEMNLIRRTVSRGGTEVELQPREFSLLEYLIRNADRVVTRTMLLEAVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F    + NVVE+HIS+LR K+      + + + R  GYS+
Sbjct: 182 -FHFDPKTNVVETHISRLRNKVDKPFATELIHTIRGAGYSL 221


>gi|255655908|ref|ZP_05401317.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296450670|ref|ZP_06892423.1| response regulator [Clostridium difficile NAP08]
 gi|296879213|ref|ZP_06903208.1| response regulator [Clostridium difficile NAP07]
 gi|296260514|gb|EFH07356.1| response regulator [Clostridium difficile NAP08]
 gi|296429756|gb|EFH15608.1| response regulator [Clostridium difficile NAP07]
          Length = 223

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +G    F +DG ++  F +   +E L     +++  I            
Sbjct: 3   LLIIEDDINLNEGLFYAFENDGFNV--FKAYTKQEGLNIFNSKNIDFIILDCNLPDGDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ ++IR  S +P+I ++   S    +   + G+DD + KP     + ARV    R+ K 
Sbjct: 61  DVCQLIREKSDIPIIMLTARDSEIDEVKGLEIGLDDYITKPFSLSVLKARVKVAIRK-KS 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +N    +  I++               L   E ++L YL+ N+G+ + K QI   I+   
Sbjct: 120 NNKVIYSNGIKLDQKLLKVYKNKVCLELSSVEYKLLSYLIENKGQILLKEQILHHIWDSE 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
           +  V+EN+V  +I +LR K+ +       + +   +GY   WN
Sbjct: 180 ENYVDENIVSVNIRRLRVKVEDDPSNPKYIKTAYGMGYL--WN 220


>gi|163858929|ref|YP_001633227.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163262657|emb|CAP44960.1| two-component response regulator [Bordetella petrii]
          Length = 232

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 92/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       +    ++          L    + D+  ++  L   G    
Sbjct: 6   ILVIEDERKLAEYLKRALSEHNYVVDIAMDGISGLHLAQETQYDLILLDVMLP--GRDGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   +VP++ ++    L+  +     G DD + KP    E+LARV A+ RR   
Sbjct: 64  SVLAELRKGDRVPILMLTARDKLEDRVRGLQDGADDYLAKPFALSELLARVLALSRRQSN 123

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S       N  + G + +    R     G    L  +E  +L  LM  +G+ +++  +  
Sbjct: 124 SVIEPNRQNVLKVGDLELDLLRRRASRGGVRLDLTAKEFTLLALLMKKQGQVLSRLDLAE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + +     NVVE  + +LR K+ +      + + R +GY ++
Sbjct: 184 QVWDI-NFNSNTNVVEVAVRRLRGKVDDPFPTKLLHTVRGMGYVLE 228


>gi|295703892|ref|YP_003596967.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801551|gb|ADF38617.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 239

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +   +  E +  L+++    +  I   ++  G   +
Sbjct: 5   ILIIEDEVRIARALQIELEHEGYQVLVVH--EGKTGLETALNSSIDLILLDVMLPGLNGI 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR     +P+I ++   +    +   D G +D + KP    E+LARV    R   
Sbjct: 63  EVLRRIRKKDIYLPIILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRHRA 122

Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  + +E          + V  + RD   + +   L  +E  +L +L+ N+   +++  I
Sbjct: 123 IVQDVSEKKDVHLSIEDLSVNLETRDVIRKNKQIILTSKEYDLLVHLLKNKNIVLSRDNI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G +D   E NVV+  I  LRKKL        + + R +GY I
Sbjct: 183 LLTVWG-YDYEGETNVVDVFIGHLRKKLEEDTTSSLIQTIRGVGYVI 228


>gi|289450478|ref|YP_003474431.1| putative DNA-binding response regulator [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289185025|gb|ADC91450.1| putative DNA-binding response regulator [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 222

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D   +++       + G  +  F             + ++  ++  L  +   V
Sbjct: 3   LIYIVEDDDNIREIEKFALLNAGHQVWEFACATAFYRQLEKMQPELCILDIMLPDEPGDV 62

Query: 61  LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +   + +R  S     P+I ++   S    +   ++G DD + KP    E++ARV A+ R
Sbjct: 63  I--LKKLRMDSHTAGLPVIMVTAKTSDLDLVKGMENGADDYIKKPFSVLELMARVKALLR 120

Query: 118 RLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R +  +    +   + V S  R+  + G++  L  +E  ++ +++AN+G  +++  +   
Sbjct: 121 RTQKPSIVELQLDALTVNSAKREIAIAGKLVDLTYKEFELIYFMLANKGIVLSRDTLMDK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D  +    ++ HI  LR+KL +  G   + + R +GY I
Sbjct: 181 VWGT-DHELNSRTLDMHIKTLRQKLGSYGG--RICTVRNVGYVI 221


>gi|225378771|ref|ZP_03755992.1| hypothetical protein ROSEINA2194_04441 [Roseburia inulinivorans DSM
           16841]
 gi|225209363|gb|EEG91717.1| hypothetical protein ROSEINA2194_04441 [Roseburia inulinivorans DSM
           16841]
          Length = 217

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 103/220 (46%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G      ++   +      E    +  S    ++ ++  L  K    +
Sbjct: 3   ILIVEDDTAIREGVAEFLKENEYEVFCAEDGEKALEILKSKEIHLALLDIMLPKK--NGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S++P+I ++     +T +  FD+  DD + KP     +L R+ A+ R    
Sbjct: 61  EVLKELRTFSELPVIMLTAVTDEETQVQTFDNLADDYICKPFSLILLLKRIEALLRARYK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + N  +     V   G      G+   +  +E ++L  L+ N G+ V++ QI   I+G  
Sbjct: 121 TENTWKYKDAVVDFSGYRATYLGKDAAVTPKEIKLLAVLLENAGQVVSRDQILDRIWGE- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +E+  + VV+ ++  LRKKL+     D + + + +GY ++
Sbjct: 180 EESPFDRVVDVYVKNLRKKLQ----LDCIITVKGVGYKLE 215


>gi|15803909|ref|NP_289945.1| osmolarity response regulator [Escherichia coli O157:H7 EDL933]
 gi|15833501|ref|NP_312274.1| osmolarity response regulator [Escherichia coli O157:H7 str. Sakai]
 gi|16131282|ref|NP_417864.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. MG1655]
 gi|16762785|ref|NP_458402.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766790|ref|NP_462405.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|26250005|ref|NP_756045.1| osmolarity response regulator [Escherichia coli CFT073]
 gi|29144272|ref|NP_807614.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|30065312|ref|NP_839483.1| osmolarity response regulator [Shigella flexneri 2a str. 2457T]
 gi|56415417|ref|YP_152492.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56480330|ref|NP_709178.2| osmolarity response regulator [Shigella flexneri 2a str. 301]
 gi|74313908|ref|YP_312327.1| osmolarity response regulator [Shigella sonnei Ss046]
 gi|82545760|ref|YP_409707.1| osmolarity response regulator [Shigella boydii Sb227]
 gi|82778778|ref|YP_405127.1| osmolarity response regulator [Shigella dysenteriae Sd197]
 gi|89110605|ref|AP_004385.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. W3110]
 gi|91212879|ref|YP_542865.1| osmolarity response regulator [Escherichia coli UTI89]
 gi|110643638|ref|YP_671368.1| osmolarity response regulator [Escherichia coli 536]
 gi|110807237|ref|YP_690757.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
 gi|117625672|ref|YP_858995.1| osmolarity response regulator [Escherichia coli APEC O1]
 gi|146313450|ref|YP_001178524.1| osmolarity response regulator [Enterobacter sp. 638]
 gi|152972283|ref|YP_001337429.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|157155385|ref|YP_001464862.1| osmolarity response regulator [Escherichia coli E24377A]
 gi|157162882|ref|YP_001460200.1| osmolarity response regulator [Escherichia coli HS]
 gi|161505932|ref|YP_001573044.1| osmolarity response regulator [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161616542|ref|YP_001590507.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549294|ref|ZP_02343053.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990705|ref|ZP_02571804.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232639|ref|ZP_02657697.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235095|ref|ZP_02660153.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241642|ref|ZP_02666574.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260774|ref|ZP_02682747.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465230|ref|ZP_02699122.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168747118|ref|ZP_02772140.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4113]
 gi|168753157|ref|ZP_02778164.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4401]
 gi|168759429|ref|ZP_02784436.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4501]
 gi|168765752|ref|ZP_02790759.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4486]
 gi|168772704|ref|ZP_02797711.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4196]
 gi|168779488|ref|ZP_02804495.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4076]
 gi|168785209|ref|ZP_02810216.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC869]
 gi|168797175|ref|ZP_02822182.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC508]
 gi|168818686|ref|ZP_02830686.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|170018359|ref|YP_001723313.1| osmolarity response regulator [Escherichia coli ATCC 8739]
 gi|170082922|ref|YP_001732242.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. DH10B]
 gi|170679581|ref|YP_001745653.1| osmolarity response regulator [Escherichia coli SMS-3-5]
 gi|187731609|ref|YP_001882082.1| osmolarity response regulator [Shigella boydii CDC 3083-94]
 gi|188494829|ref|ZP_03002099.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
 gi|188535332|ref|YP_001909129.1| osmolarity response regulator [Erwinia tasmaniensis Et1/99]
 gi|191167885|ref|ZP_03029689.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
 gi|191171568|ref|ZP_03033116.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
 gi|193061647|ref|ZP_03042744.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
 gi|193068756|ref|ZP_03049716.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
 gi|194426991|ref|ZP_03059543.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
 gi|194431316|ref|ZP_03063609.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
 gi|194435761|ref|ZP_03067864.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
 gi|194444248|ref|YP_002042753.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451706|ref|YP_002047526.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470984|ref|ZP_03076968.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736616|ref|YP_002116444.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195934894|ref|ZP_03080276.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|195940963|ref|ZP_03086345.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|197250375|ref|YP_002148425.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197261835|ref|ZP_03161909.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364347|ref|YP_002143984.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243980|ref|YP_002217461.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200386697|ref|ZP_03213309.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928549|ref|ZP_03219748.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354874|ref|YP_002228675.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206580912|ref|YP_002236223.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
 gi|207858742|ref|YP_002245393.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|208808819|ref|ZP_03251156.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4206]
 gi|208813810|ref|ZP_03255139.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4045]
 gi|208819419|ref|ZP_03259739.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4042]
 gi|209400499|ref|YP_002272840.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4115]
 gi|209920861|ref|YP_002294945.1| osmolarity response regulator [Escherichia coli SE11]
 gi|213426887|ref|ZP_03359637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852070|ref|ZP_03381602.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|215488686|ref|YP_002331117.1| osmolarity response regulator [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217324126|ref|ZP_03440210.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. TW14588]
 gi|218550663|ref|YP_002384454.1| osmolarity response regulator [Escherichia fergusonii ATCC 35469]
 gi|218555954|ref|YP_002388867.1| osmolarity response regulator [Escherichia coli IAI1]
 gi|218560463|ref|YP_002393376.1| osmolarity response regulator [Escherichia coli S88]
 gi|218691682|ref|YP_002399894.1| osmolarity response regulator [Escherichia coli ED1a]
 gi|218697088|ref|YP_002404755.1| osmolarity response regulator [Escherichia coli 55989]
 gi|218702150|ref|YP_002409779.1| osmolarity response regulator [Escherichia coli IAI39]
 gi|218706996|ref|YP_002414515.1| osmolarity response regulator [Escherichia coli UMN026]
 gi|224585296|ref|YP_002639095.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|227883539|ref|ZP_04001344.1| response regulator [Escherichia coli 83972]
 gi|237703135|ref|ZP_04533616.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
 gi|238902496|ref|YP_002928292.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli BW2952]
 gi|238910492|ref|ZP_04654329.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|254795320|ref|YP_003080157.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020749|ref|ZP_05434614.1| osmolarity response regulator [Shigella sp. D9]
 gi|256025867|ref|ZP_05439732.1| osmolarity response regulator [Escherichia sp. 4_1_40B]
 gi|259910053|ref|YP_002650409.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
 gi|260846189|ref|YP_003223967.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O103:H2 str. 12009]
 gi|260857512|ref|YP_003231403.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O26:H11 str. 11368]
 gi|260870131|ref|YP_003236533.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O111:H- str. 11128]
 gi|261224686|ref|ZP_05938967.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254419|ref|ZP_05946952.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           FRIK966]
 gi|262045241|ref|ZP_06018267.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|283787961|ref|YP_003367826.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|283835800|ref|ZP_06355541.1| hypothetical protein CIT292_10194 [Citrobacter youngae ATCC 29220]
 gi|288933210|ref|YP_003437269.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289824834|ref|ZP_06544277.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|290512014|ref|ZP_06551382.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Klebsiella sp. 1_1_55]
 gi|291284741|ref|YP_003501559.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291619235|ref|YP_003521977.1| OmpR [Pantoea ananatis LMG 20103]
 gi|292489908|ref|YP_003532798.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
 gi|292900945|ref|YP_003540314.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|293406983|ref|ZP_06650907.1| ompR [Escherichia coli FVEC1412]
 gi|293412822|ref|ZP_06655490.1| ompR [Escherichia coli B354]
 gi|298382725|ref|ZP_06992320.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
 gi|300718778|ref|YP_003743581.1| transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
 gi|300815399|ref|ZP_07095624.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
 gi|300822798|ref|ZP_07102934.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
 gi|300898908|ref|ZP_07117207.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
 gi|300907453|ref|ZP_07125098.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
 gi|300919310|ref|ZP_07135823.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
 gi|300926906|ref|ZP_07142671.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
 gi|300931064|ref|ZP_07146418.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
 gi|300937298|ref|ZP_07152139.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
 gi|300946853|ref|ZP_07161093.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
 gi|300956733|ref|ZP_07169004.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
 gi|300985401|ref|ZP_07177424.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
 gi|300987222|ref|ZP_07178059.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
 gi|301019578|ref|ZP_07183738.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
 gi|301023125|ref|ZP_07186931.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
 gi|301050386|ref|ZP_07197273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
 gi|301302283|ref|ZP_07208415.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
 gi|301329710|ref|ZP_07222459.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
 gi|306816257|ref|ZP_07450395.1| osmolarity response regulator [Escherichia coli NC101]
 gi|307140090|ref|ZP_07499446.1| osmolarity response regulator [Escherichia coli H736]
 gi|307311931|ref|ZP_07591569.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309785850|ref|ZP_07680481.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
 gi|309794675|ref|ZP_07689097.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
 gi|311277661|ref|YP_003939892.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|312968285|ref|ZP_07782495.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
 gi|312972331|ref|ZP_07786505.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
 gi|317049901|ref|YP_004117549.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|330012469|ref|ZP_08307383.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
 gi|331644105|ref|ZP_08345234.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
 gi|331649203|ref|ZP_08350289.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
 gi|331654982|ref|ZP_08355981.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
 gi|331659694|ref|ZP_08360632.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
 gi|331665010|ref|ZP_08365911.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
 gi|331670227|ref|ZP_08371066.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
 gi|331679469|ref|ZP_08380139.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
 gi|331685045|ref|ZP_08385631.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
 gi|332281952|ref|ZP_08394365.1| transcriptional regulatory protein ompR [Shigella sp. D9]
 gi|76364198|sp|P0AA16|OMPR_ECOLI RecName: Full=Transcriptional regulatory protein ompR
 gi|76364199|sp|P0AA20|OMPR_SALTI RecName: Full=Transcriptional regulatory protein ompR
 gi|76364200|sp|P0AA19|OMPR_SALTY RecName: Full=Transcriptional regulatory protein ompR
 gi|76364201|sp|P0AA21|OMPR_SHIFL RecName: Full=Transcriptional regulatory protein ompR
 gi|85692720|sp|P0AA18|OMPR_ECO57 RecName: Full=Transcriptional regulatory protein ompR
 gi|85692721|sp|P0AA17|OMPR_ECOL6 RecName: Full=Transcriptional regulatory protein ompR
 gi|25300972|pir||AD0998 two-component response regulator OmpR ompR [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|12518032|gb|AAG58506.1|AE005562_9 response regulator (sensor, EnvZ) affecting transcription of ompC
           and ompF: outer membrane protein synthesis [Escherichia
           coli O157:H7 str. EDL933]
 gi|26110434|gb|AAN82619.1|AE016768_37 Transcriptional Regulatory protein ompR [Escherichia coli CFT073]
 gi|453287|gb|AAA16241.1| OmpR protein [Escherichia coli]
 gi|602089|emb|CAA54510.1| ompR [Salmonella enterica subsp. enterica serovar Typhi]
 gi|606339|gb|AAA58202.1| CG Site No. 434; alternate name ompB [Escherichia coli str. K-12
           substr. MG1655]
 gi|1789809|gb|AAC76430.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. MG1655]
 gi|13276842|emb|CAC34268.1| OmpR protein [Shigella flexneri]
 gi|13363721|dbj|BAB37670.1| response regulator OmpR [Escherichia coli O157:H7 str. Sakai]
 gi|16422061|gb|AAL22364.1| response regulator in two-component regulatory system with EnvZ
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16505091|emb|CAD08112.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139909|gb|AAO71474.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|30043574|gb|AAP19294.1| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 2457T]
 gi|56129674|gb|AAV79180.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|56383881|gb|AAN44885.2| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 301]
 gi|73857385|gb|AAZ90092.1| response regulator [Shigella sonnei Ss046]
 gi|81242926|gb|ABB63636.1| response regulator affecting transcription of ompC and ompF
           [Shigella dysenteriae Sd197]
 gi|81247171|gb|ABB67879.1| OmpR [Shigella boydii Sb227]
 gi|85676636|dbj|BAE77886.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K12 substr. W3110]
 gi|91074453|gb|ABE09334.1| transcriptional regulatory protein OmpR [Escherichia coli UTI89]
 gi|110345230|gb|ABG71467.1| transcriptional regulatory protein OmpR [Escherichia coli 536]
 gi|110616785|gb|ABF05452.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
 gi|115514796|gb|ABJ02871.1| osmolarity response regulator OmpR [Escherichia coli APEC O1]
 gi|145320326|gb|ABP62473.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
 gi|150957132|gb|ABR79162.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|157068562|gb|ABV07817.1| transcriptional regulatory protein OmpR [Escherichia coli HS]
 gi|157077415|gb|ABV17123.1| transcriptional regulatory protein OmpR [Escherichia coli E24377A]
 gi|160867279|gb|ABX23902.1| hypothetical protein SARI_04113 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365906|gb|ABX69674.1| hypothetical protein SPAB_04358 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|169753287|gb|ACA75986.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169890757|gb|ACB04464.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. DH10B]
 gi|170517299|gb|ACB15477.1| transcriptional regulatory protein OmpR [Escherichia coli SMS-3-5]
 gi|187428601|gb|ACD07875.1| transcriptional regulatory protein OmpR [Shigella boydii CDC
           3083-94]
 gi|187771637|gb|EDU35481.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4196]
 gi|188018416|gb|EDU56538.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4113]
 gi|188030374|emb|CAO98265.1| Transcriptional regulatory protein OmpR [Erwinia tasmaniensis
           Et1/99]
 gi|188490028|gb|EDU65131.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
 gi|189002353|gb|EDU71339.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4076]
 gi|189358802|gb|EDU77221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4401]
 gi|189364583|gb|EDU83002.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4486]
 gi|189369806|gb|EDU88222.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4501]
 gi|189374544|gb|EDU92960.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC869]
 gi|189379922|gb|EDU98338.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC508]
 gi|190902058|gb|EDV61803.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
 gi|190908195|gb|EDV67786.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
 gi|192932437|gb|EDV85034.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
 gi|192957832|gb|EDV88275.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
 gi|194402911|gb|ACF63133.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194410010|gb|ACF70229.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194414952|gb|EDX31222.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
 gi|194420771|gb|EDX36847.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
 gi|194425304|gb|EDX41288.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
 gi|194457348|gb|EDX46187.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712118|gb|ACF91339.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195632389|gb|EDX50873.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095824|emb|CAR61397.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197214078|gb|ACH51475.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240090|gb|EDY22710.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291564|gb|EDY30916.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197938496|gb|ACH75829.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603795|gb|EDZ02340.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321982|gb|EDZ07180.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274655|emb|CAR39709.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205325884|gb|EDZ13723.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330636|gb|EDZ17400.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333120|gb|EDZ19884.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338846|gb|EDZ25610.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344561|gb|EDZ31325.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350330|gb|EDZ36961.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206569970|gb|ACI11746.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
 gi|206710545|emb|CAR34903.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|208728620|gb|EDZ78221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4206]
 gi|208735087|gb|EDZ83774.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4045]
 gi|208739542|gb|EDZ87224.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4042]
 gi|209161899|gb|ACI39332.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4115]
 gi|209756518|gb|ACI76571.1| response regulator OmpR [Escherichia coli]
 gi|209756520|gb|ACI76572.1| response regulator OmpR [Escherichia coli]
 gi|209756522|gb|ACI76573.1| response regulator OmpR [Escherichia coli]
 gi|209756524|gb|ACI76574.1| response regulator OmpR [Escherichia coli]
 gi|209756526|gb|ACI76575.1| response regulator OmpR [Escherichia coli]
 gi|209914120|dbj|BAG79194.1| two-component response regulator [Escherichia coli SE11]
 gi|215266758|emb|CAS11198.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320347|gb|EEC28771.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. TW14588]
 gi|218353820|emb|CAV00172.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli 55989]
 gi|218358204|emb|CAQ90851.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia fergusonii ATCC 35469]
 gi|218362722|emb|CAR00348.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli IAI1]
 gi|218367232|emb|CAR05006.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli S88]
 gi|218372136|emb|CAR19998.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli IAI39]
 gi|218429246|emb|CAR10202.2| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli ED1a]
 gi|218434093|emb|CAR15010.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli UMN026]
 gi|222035107|emb|CAP77852.1| Transcriptional regulatory protein ompR [Escherichia coli LF82]
 gi|224469824|gb|ACN47654.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224965675|emb|CAX57207.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
 gi|226902399|gb|EEH88658.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
 gi|227839418|gb|EEJ49884.1| response regulator [Escherichia coli 83972]
 gi|238860863|gb|ACR62861.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli BW2952]
 gi|254594720|gb|ACT74081.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli O157:H7 str. TW14359]
 gi|257756161|dbj|BAI27663.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O26:H11 str. 11368]
 gi|257761336|dbj|BAI32833.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O103:H2 str. 12009]
 gi|257766487|dbj|BAI37982.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O111:H- str. 11128]
 gi|259037451|gb|EEW38696.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|260447576|gb|ACX37998.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|261248657|emb|CBG26495.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995722|gb|ACY90607.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|281180437|dbj|BAI56767.1| two-component response regulator [Escherichia coli SE15]
 gi|281602755|gb|ADA75739.1| Transcriptional regulatory protein ompR [Shigella flexneri 2002017]
 gi|282951415|emb|CBG91114.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|283480152|emb|CAY76068.1| two-component response regulator OmpR [Erwinia pyrifoliae DSM
           12163]
 gi|284923397|emb|CBG36491.1| two-component response regulator [Escherichia coli 042]
 gi|288887939|gb|ADC56257.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289775804|gb|EFD83804.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Klebsiella sp. 1_1_55]
 gi|290764614|gb|ADD58575.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291067965|gb|EFE06074.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC
           29220]
 gi|291154265|gb|ADD78849.1| OmpR [Pantoea ananatis LMG 20103]
 gi|291200793|emb|CBJ47927.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291425794|gb|EFE98828.1| ompR [Escherichia coli FVEC1412]
 gi|291468469|gb|EFF10962.1| ompR [Escherichia coli B354]
 gi|291555345|emb|CBA23707.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
 gi|294490408|gb|ADE89164.1| transcriptional regulatory protein OmpR [Escherichia coli IHE3034]
 gi|295097016|emb|CBK86106.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
 gi|298276561|gb|EFI18079.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
 gi|299064614|emb|CAX61734.1| Transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
 gi|299880979|gb|EFI89190.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
 gi|300297896|gb|EFJ54281.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
 gi|300306257|gb|EFJ60777.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
 gi|300316489|gb|EFJ66273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
 gi|300357447|gb|EFJ73317.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
 gi|300399166|gb|EFJ82704.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
 gi|300400791|gb|EFJ84329.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
 gi|300408084|gb|EFJ91622.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
 gi|300413605|gb|EFJ96915.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
 gi|300417089|gb|EFK00400.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
 gi|300453462|gb|EFK17082.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
 gi|300457621|gb|EFK21114.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
 gi|300461084|gb|EFK24577.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
 gi|300524564|gb|EFK45633.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
 gi|300532291|gb|EFK53353.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
 gi|300842446|gb|EFK70206.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
 gi|300844222|gb|EFK71982.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
 gi|301160045|emb|CBW19564.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|305850653|gb|EFM51110.1| osmolarity response regulator [Escherichia coli NC101]
 gi|306908075|gb|EFN38575.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307555491|gb|ADN48266.1| transcriptional regulatory protein OmpR [Escherichia coli ABU
           83972]
 gi|307628466|gb|ADN72770.1| osmolarity response regulator [Escherichia coli UM146]
 gi|308121725|gb|EFO58987.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
 gi|308746856|gb|ADO46608.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308926970|gb|EFP72446.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
 gi|309703816|emb|CBJ03157.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310334708|gb|EFQ00913.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
 gi|310765655|gb|ADP10605.1| osmolarity response regulator [Erwinia sp. Ejp617]
 gi|312174092|emb|CBX82345.1| two-component response regulator OmpR [Erwinia amylovora ATCC
           BAA-2158]
 gi|312287110|gb|EFR15020.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
 gi|312914526|dbj|BAJ38500.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|312947953|gb|ADR28780.1| osmolarity response regulator [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313647299|gb|EFS11751.1| transcriptional regulatory protein ompR [Shigella flexneri 2a str.
           2457T]
 gi|315062684|gb|ADT77011.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli W]
 gi|315137981|dbj|BAJ45140.1| osmolarity response regulator [Escherichia coli DH1]
 gi|315255995|gb|EFU35963.1| transcriptional regulatory protein OmpR [Escherichia coli MS 85-1]
 gi|315286031|gb|EFU45469.1| transcriptional regulatory protein OmpR [Escherichia coli MS 110-3]
 gi|315291671|gb|EFU51027.1| transcriptional regulatory protein OmpR [Escherichia coli MS 153-1]
 gi|315295898|gb|EFU55211.1| transcriptional regulatory protein OmpR [Escherichia coli MS 16-3]
 gi|315614673|gb|EFU95313.1| transcriptional regulatory protein ompR [Escherichia coli 3431]
 gi|316951518|gb|ADU70993.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|320087917|emb|CBY97679.1| probable transcriptional regulator ycf27 OmpR-like protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|320175772|gb|EFW50858.1| Two-component system response regulator OmpR [Shigella dysenteriae
           CDC 74-1112]
 gi|320186725|gb|EFW61448.1| Two-component system response regulator OmpR [Shigella flexneri CDC
           796-83]
 gi|320191584|gb|EFW66234.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. EC1212]
 gi|320197363|gb|EFW71978.1| Two-component system response regulator OmpR [Escherichia coli
           WV_060327]
 gi|320199575|gb|EFW74165.1| Two-component system response regulator OmpR [Escherichia coli
           EC4100B]
 gi|320639687|gb|EFX09281.1| osmolarity response regulator [Escherichia coli O157:H7 str. G5101]
 gi|320645185|gb|EFX14201.1| osmolarity response regulator [Escherichia coli O157:H- str.
           493-89]
 gi|320650496|gb|EFX18962.1| osmolarity response regulator [Escherichia coli O157:H- str. H
           2687]
 gi|320655688|gb|EFX23611.1| osmolarity response regulator [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661472|gb|EFX28887.1| osmolarity response regulator [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666495|gb|EFX33478.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           LSU-61]
 gi|321226552|gb|EFX51602.1| Two-component system response regulator OmpR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614124|gb|EFY11060.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618016|gb|EFY14909.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625370|gb|EFY22196.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629835|gb|EFY26608.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632276|gb|EFY29027.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636373|gb|EFY33080.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643229|gb|EFY39798.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644769|gb|EFY41305.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651206|gb|EFY47590.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654926|gb|EFY51241.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659183|gb|EFY55435.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663116|gb|EFY59320.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668602|gb|EFY64755.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674594|gb|EFY70687.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678200|gb|EFY74261.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682543|gb|EFY78564.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684256|gb|EFY80262.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131861|gb|ADX19291.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323154238|gb|EFZ40441.1| transcriptional regulatory protein ompR [Escherichia coli EPECa14]
 gi|323162790|gb|EFZ48627.1| transcriptional regulatory protein ompR [Escherichia coli E128010]
 gi|323164967|gb|EFZ50758.1| transcriptional regulatory protein ompR [Shigella sonnei 53G]
 gi|323174038|gb|EFZ59666.1| transcriptional regulatory protein ompR [Escherichia coli LT-68]
 gi|323179070|gb|EFZ64644.1| transcriptional regulatory protein ompR [Escherichia coli 1180]
 gi|323182865|gb|EFZ68266.1| transcriptional regulatory protein ompR [Escherichia coli 1357]
 gi|323189006|gb|EFZ74290.1| transcriptional regulatory protein ompR [Escherichia coli RN587/1]
 gi|323192189|gb|EFZ77421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196385|gb|EFZ81537.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201814|gb|EFZ86877.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206356|gb|EFZ91317.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211949|gb|EFZ96776.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216855|gb|EGA01578.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222254|gb|EGA06637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224268|gb|EGA08557.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228197|gb|EGA12328.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233536|gb|EGA17629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237002|gb|EGA21069.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243783|gb|EGA27799.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323245975|gb|EGA29962.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250751|gb|EGA34629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255762|gb|EGA39512.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261380|gb|EGA44966.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267647|gb|EGA51129.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268528|gb|EGA51995.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|323376728|gb|ADX48996.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323934605|gb|EGB31005.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323939375|gb|EGB35586.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323944373|gb|EGB40448.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323950062|gb|EGB45945.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323954658|gb|EGB50440.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323959595|gb|EGB55247.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323966218|gb|EGB61654.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323970003|gb|EGB65278.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323974791|gb|EGB69903.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324009406|gb|EGB78625.1| transcriptional regulatory protein OmpR [Escherichia coli MS 57-2]
 gi|324018722|gb|EGB87941.1| transcriptional regulatory protein OmpR [Escherichia coli MS 117-3]
 gi|324111717|gb|EGC05697.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|324116400|gb|EGC10319.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|325498947|gb|EGC96806.1| osmolarity response regulator [Escherichia fergusonii ECD227]
 gi|326337632|gb|EGD61467.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. 1044]
 gi|326344617|gb|EGD68366.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. 1125]
 gi|326625242|gb|EGE31587.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326630020|gb|EGE36363.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|327251040|gb|EGE62733.1| transcriptional regulatory protein ompR [Escherichia coli STEC_7v]
 gi|327395564|dbj|BAK12986.1| transcriptional regulatory protein OmpR [Pantoea ananatis AJ13355]
 gi|328533820|gb|EGF60499.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
 gi|330909438|gb|EGH37952.1| two-component system response regulator OmpR [Escherichia coli
           AA86]
 gi|331036399|gb|EGI08625.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
 gi|331041701|gb|EGI13845.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
 gi|331046997|gb|EGI19075.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
 gi|331052909|gb|EGI24942.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
 gi|331057520|gb|EGI29506.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
 gi|331062289|gb|EGI34209.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
 gi|331072641|gb|EGI43966.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
 gi|331077416|gb|EGI48628.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
 gi|332085553|gb|EGI90719.1| transcriptional regulatory protein ompR [Shigella boydii 5216-82]
 gi|332085681|gb|EGI90845.1| transcriptional regulatory protein ompR [Shigella dysenteriae
           155-74]
 gi|332090460|gb|EGI95558.1| transcriptional regulatory protein ompR [Shigella boydii 3594-74]
 gi|332104304|gb|EGJ07650.1| transcriptional regulatory protein ompR [Shigella sp. D9]
 gi|332345357|gb|AEE58691.1| transcriptional regulatory protein OmpR [Escherichia coli UMNK88]
 gi|332749496|gb|EGJ79913.1| transcriptional regulatory protein ompR [Shigella flexneri K-671]
 gi|332750346|gb|EGJ80757.1| transcriptional regulatory protein ompR [Shigella flexneri 4343-70]
 gi|332751423|gb|EGJ81826.1| transcriptional regulatory protein ompR [Shigella flexneri 2747-71]
 gi|332763612|gb|EGJ93851.1| ompR [Shigella flexneri 2930-71]
 gi|332990354|gb|AEF09337.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
 gi|332996407|gb|EGK16034.1| transcriptional regulatory protein ompR [Shigella flexneri VA-6]
 gi|332996648|gb|EGK16273.1| transcriptional regulatory protein ompR [Shigella flexneri K-272]
 gi|332997387|gb|EGK17003.1| transcriptional regulatory protein ompR [Shigella flexneri K-218]
 gi|333012311|gb|EGK31692.1| transcriptional regulatory protein ompR [Shigella flexneri K-304]
 gi|333013055|gb|EGK32431.1| transcriptional regulatory protein ompR [Shigella flexneri K-227]
          Length = 239

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|303247778|ref|ZP_07334047.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302490862|gb|EFL50761.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 220

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++  G     G  G++++   S +      ++   D   ++  L       L
Sbjct: 3   ILIIEDDQVLAAGLKVGLGLAGMTVDMVGSCDAARTALATTTFDAVVLDLMLPD--GSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +R      P++ ++    +   +   D G DD   KP    E+ AR+ AI RR  
Sbjct: 61  DVLRAMRQRGDRTPVLLLTALDEITDRVKGLDLGADDYCGKPFDLDELAARIRAIGRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        I +        + G+   L RRE  +L  LM + G   +K +I   +YG
Sbjct: 121 GRAAPCLTAAGIALEPASLSATINGQPLTLSRREFAVLALLMEHPGAIRSKGEIEDRLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E VE N VE H+  LR K    +G + +++ R LGY +
Sbjct: 181 -WGEEVESNTVEVHVHHLRAK----VGREKIETVRGLGYRM 216


>gi|156974939|ref|YP_001445846.1| hypothetical protein VIBHAR_02658 [Vibrio harveyi ATCC BAA-1116]
 gi|269963434|ref|ZP_06177761.1| DNA-binding response regulator [Vibrio harveyi 1DA3]
 gi|156526533|gb|ABU71619.1| hypothetical protein VIBHAR_02658 [Vibrio harveyi ATCC BAA-1116]
 gi|269831834|gb|EEZ85966.1| DNA-binding response regulator [Vibrio harveyi 1DA3]
          Length = 219

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +    ++G   E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDEPRLGEQILETLENNGWVPELSQDGIDALYRATSEEWDAIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E+ AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       QG+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N +E  I ++RKK+  K+    + + R LGY ++
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|282882337|ref|ZP_06290965.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
 gi|281297758|gb|EFA90226.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
          Length = 233

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + +       ++G S+    + +  E ++    +    I   L+       
Sbjct: 6   ILVCEDDKNIANSIGLYLENEGFSV--IYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + +R  S VP+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 64  EAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHS 123

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S+   + G I++ +  +   V  ++  L   E +ILE+LM N  K  +   I+  
Sbjct: 124 YDNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           ++   + A+E   V  HI ++R+K+  +      +     LGY    N
Sbjct: 184 VWN--EPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDN 229


>gi|297587723|ref|ZP_06946367.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297574412|gb|EFH93132.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 219

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + + +DD   + D    +   +   ++ + N L+ +      ++ D+  ++  +   G  
Sbjct: 3   LILAVDDELDMLDLIKNILKKNNHQVDVYQNPLDVDN--SKLSKYDLILLDVMMP--GID 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +   + IRA    P++ ++     +  ++    G DD + KP    E+LAR+ A  RR 
Sbjct: 59  GISFCKDIRAKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGAAELLARIEAHLRRE 118

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K   +     G IR      +  V  +   L + E +I E L   +G+  ++ QI+  I+
Sbjct: 119 KRERHTSLNLGEIRFDLSSNEVFVGDKKVHLTKSEYQISELLAKRKGQVFSREQIYELIF 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G FD   + + +  HI  +R K   K G +P+++   +GY   WN
Sbjct: 179 G-FDGIGDASAISEHIKNIRSKF-QKYGKNPIETVWGIGYK--WN 219


>gi|197302733|ref|ZP_03167787.1| hypothetical protein RUMLAC_01463 [Ruminococcus lactaris ATCC
           29176]
 gi|197298315|gb|EDY32861.1| hypothetical protein RUMLAC_01463 [Ruminococcus lactaris ATCC
           29176]
          Length = 244

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + +  E L    +E V+ +   ++      +
Sbjct: 17  ILVCDDDKEIVEAIDIYLSQEGYHI--LKAYDGVEALNILEKEKVNLLILDVMMPKLDGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  + VP+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 75  RATLKIRETNSVPIIILSAKSEDSDKILGLNIGADDYVTKPFNPLELVARVKSQLRRYNE 134

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +      E G +R+  D ++  V GE+  L   E  IL  L+ N+G+  +  QI
Sbjct: 135 LGGTSQEQKEKVYEVGGLRINDDLKEVTVDGELVKLTPIEYNILLLLLKNQGRVFSINQI 194

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +I+   +    +N V  HI  +R+K+  N      +     +GY ID
Sbjct: 195 YESIWNE-EAIGADNTVAVHIRHIREKIEINPKDPRYLKVVWGVGYKID 242


>gi|320157931|ref|YP_004190309.1| DNA-binding response regulator [Vibrio vulnificus MO6-24/O]
 gi|319933243|gb|ADV88106.1| DNA-binding response regulator [Vibrio vulnificus MO6-24/O]
          Length = 218

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+    +      G +++     +      +   ED +A+   L       L
Sbjct: 3   LLLIEDDTLLGQSMVTSLSRHGYTVDWLE--KGSGVTSALKTEDFTAVILDLTLPDIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R IR A   +P++ ++    ++  +   D G DD + KP    E+LAR+  + RR  
Sbjct: 61  DVLRNIRSAGFNLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G + +    +    Q  V  L R E +IL  LM N G+ ++K Q+  +++G
Sbjct: 121 GSATEVIEVGELSLSLSEQSIRYQEAVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLHG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D++  +N +E HI  LRKK        P+ + R +GY I+
Sbjct: 181 -WDDSASDNAIEVHIHNLRKK----APNVPIKNIRGVGYIIE 217


>gi|291543637|emb|CBL16746.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 236

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 99/231 (42%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   ++D   +    DG  +  F + +       +A  D+  ++  +   G   L
Sbjct: 5   IYIADDEKNIRDLIKSFLESDGYRVWAFETGDALMGAFQAAPADLVILDIMMP--GTDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +RA + VP+I ++   S    +     G DD + KP     +L RV ++ RR+++
Sbjct: 63  TICQQLRAKTDVPIIMLTAKDSEYDYVQGITIGSDDYLTKPFRPTTLLMRVRSLLRRMEM 122

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++ R            G +   ++       G+     + E R+L Y+M   GK  A+ +
Sbjct: 123 NSRRPVQPEEPDDLVVGDLTFSAEANTISCNGKGIGFTQTELRMLSYMMQKPGKAYARDK 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +   I+G ++  VE  V +  + ++R+KL        V +    GY ++ +
Sbjct: 183 LLETIWG-YETEVETRVTDETLRRIRRKLSLAGSSVCVQTIWGYGYKLEVS 232


>gi|251797011|ref|YP_003011742.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544637|gb|ACT01656.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   ++D  I+    +G       +  +   +  S+  D+  ++  L        +
Sbjct: 5   LVVEDEDKIRDVVISYLKKEGFKTLEAATGSYALEVLRSSLVDLVILDLMLPD--MDGEQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   IR  + +P++ +S   S    +     G DD + KP   RE++ARV AI RR   S
Sbjct: 63  VCVSIRKTNSIPILMLSAKMSDNNRIKGLSIGADDYLIKPFDPREVVARVRAILRRTDDS 122

Query: 123 N-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + + S  +     GE   L   E ++L  L     +   + ++   +
Sbjct: 123 QLLADRSSYNHGHLEIDSLKQMVFCHGEPISLTPNEYKLLLMLAKYPQRHFTRNELVDKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            G +D   +   ++ H+  +R K+  +      + +    GY  D
Sbjct: 183 LG-YDFEGDVRTIDQHVKNIRYKIEPDPKNPLYIRTVYGSGYRFD 226


>gi|146342521|ref|YP_001207569.1| OmpR family two component response transcriptional regulator
           [Bradyrhizobium sp. ORS278]
 gi|146195327|emb|CAL79352.1| putative two component response transcriptional regulator (OmpR
           family) [Bradyrhizobium sp. ORS278]
          Length = 255

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D   +      L  + G +     S      +    + D+  ++  L    E  +
Sbjct: 21  ILCVEDDREIAALLTELLQEHGFAPRFVASAAAMNDVLQREQVDLIMLDLMLPD--EDGM 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S VP+I ++        +   + G DD V KP + RE++AR+ A+ RR ++
Sbjct: 79  SICRRLRQISAVPIIMVTAKGEDIDRILGLELGADDYVVKPFNPRELVARIRALLRRSQL 138

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQI 173
                            R+    R       V   L   E  IL     N G+ +++ Q+
Sbjct: 139 HPAVIAARQAPMMFDGWRIEPATRTLFDPDRVKITLTSAEFDILLAFCRNAGRVLSREQL 198

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
               +G     VE   ++ HIS++R+K+      +  + + R  GY  
Sbjct: 199 IELAHGGQAGPVE-RSIDVHISRIRQKIEPGARSWSMIKTVRLGGYVF 245


>gi|256849457|ref|ZP_05554889.1| DNA-binding response regulator [Lactobacillus crispatus MV-1A-US]
 gi|256713573|gb|EEU28562.1| DNA-binding response regulator [Lactobacillus crispatus MV-1A-US]
          Length = 225

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   ++   +         + GF        +  + R D+  ++  L    E   
Sbjct: 4   IWCVEDDESIRKIEMYTLEAMNFKVRGFEDGHSFFKVLDNNRPDLVILDLMLPD--EDGS 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   ++  S    +P+I  S   +    +   DSG DD + KP    E+++RV A+ RR
Sbjct: 62  EILHRLKYTSATEDLPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRR 121

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   ++ E   I++     +    G    L  +E  +L+ L+ + G   ++ +I   I
Sbjct: 122 TNRKKEDKIEKDGIKILLKRHEVFENGRQVDLTLKEYGLLKLLITHPGTVFSREEIMDQI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +      VE   V+ H+  LR+KL        +++ R +GY 
Sbjct: 182 WETG-FYVETRTVDVHVRTLRQKLGEAG--KYIETLRGVGYR 220


>gi|300854679|ref|YP_003779663.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434794|gb|ADK14561.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 231

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 87/228 (38%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +   +  F + +    L       +      ++       
Sbjct: 4   ILIADDEQEIIELMTLYLERENYEV--FGAYDGFSALDILKEGAIDIAIIDIMMPNMDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR   ++P+I +S    +   +   + G DD + KP    E++ARV A  RR   
Sbjct: 62  QLIKKIREKYKIPVIVMSAKSEISDKILGLELGADDYITKPCDPLEVMARVKAQLRRCSE 121

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N            G +++ +         +   +   E ++L  LM N  K   K QIF
Sbjct: 122 FNCNEEKDTETIVVGELKLDTSCCVIYKGDKPISITSTEYKLLLLLMGNPKKVFTKKQIF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            +++       ++N +  HISKLR K+         + + R LGY  +
Sbjct: 182 ESVWNEP-FYGDDNTIMVHISKLRDKIEEDSKNPVYLKTIRGLGYKFE 228


>gi|293602287|ref|ZP_06684734.1| two component response regulator IrlR [Achromobacter piechaudii
           ATCC 43553]
 gi|292819316|gb|EFF78350.1| two component response regulator IrlR [Achromobacter piechaudii
           ATCC 43553]
          Length = 229

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 93/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       +    ++  +       L    + D+  ++  L   G    
Sbjct: 3   ILVVEDERKLAEYLKRALSEHNYVVDVASDGVSGLHLARETQYDLILLDVMLP--GMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R   +VP++ ++    ++  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DVLHELRKSDRVPVLMLTARDKVEDRVRGLQDGADDYLVKPFALSELLARVLALGRRRGH 120

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N  + G + +    R     G    L  +E  +L  LM  +G+ +++  +  
Sbjct: 121 IVAEASRQNVLKVGDLELDLLRRKASRAGTRLDLTAKEFTLLALLMRKQGEVLSRLDLAE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + +     NVVE  + +LR K+ +      + + R +GY ++
Sbjct: 181 QVWDI-NFNSNTNVVEVAVRRLRGKVDDPFETKVLHTVRGMGYVLE 225


>gi|254249049|ref|ZP_04942369.1| Response regulator [Burkholderia cenocepacia PC184]
 gi|124875550|gb|EAY65540.1| Response regulator [Burkholderia cenocepacia PC184]
          Length = 221

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +     +     G +++          L    R D+  ++A L   G    
Sbjct: 3   ILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLP--GMDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR  
Sbjct: 61  TVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N+    G + +    R  E+ G+   L R+E  +LE L +   +  +K ++ + ++ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +E    N VE +++++RKKL+       + + R +GY I
Sbjct: 181 FGNEPT-ANAVEQYVTRVRKKLQ--GSSVEIRTARGMGYQI 218


>gi|109898617|ref|YP_661872.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109700898|gb|ABG40818.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 244

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   +         ++G  +E  +S     E L  S   D   ++  +   G   
Sbjct: 8   ILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIMMP--GMSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +RA  QVP++ ++        +   + G DD + KP + RE+ AR+ AI RR +
Sbjct: 66  LDVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRRTE 125

Query: 121 VSNNRAETG---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            S      G          I + +  R   V     PL   E   L  LM   G+ + K 
Sbjct: 126 NSLGNGAAGKTIVHALLHGIELDTGTRTAVVNNTTLPLTSAEFNALSLLMERAGQTITKQ 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   +     EA +   ++ HIS++R+KL ++   D + S R +GY +
Sbjct: 186 DMTQEVLNRPLEAYD-RAMDVHISRIRQKLSSQGINDVIKSIRGVGYQM 233


>gi|89896373|ref|YP_519860.1| hypothetical protein DSY3627 [Desulfitobacterium hafniense Y51]
 gi|219667799|ref|YP_002458234.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335821|dbj|BAE85416.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538059|gb|ACL19798.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 7/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++++  +    ++G   +   + + E+ L+      V  +   ++        
Sbjct: 9   LVVEDEDILREVIVDYLVENGY--QALEAADGEKALELFLANSVDLVILDIVLPKVDGWS 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR +S +P+I ++       +L  ++ G DD + KP   R ++A+V     +    
Sbjct: 67  VCRRIRRNSGIPIIILTARSDEDDSLLGYELGADDYLIKPYSPRVLMAKVKRFLEKTSDT 126

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V   +   G I +    R   V+G+   L   E  IL YLM N+G  + + Q+ + ++G 
Sbjct: 127 VEEMQISAGGILLNLGSRCVSVEGDPINLTHTEFEILAYLMQNKGLVITREQLITKLWG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   +E  V SHI  LR KL +K     + +    GY  
Sbjct: 186 YDFYGDEKTVNSHIRNLRSKLGSKGSS--IVTVIRSGYKF 223


>gi|296139723|ref|YP_003646966.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296027857|gb|ADG78627.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 9/223 (4%)

Query: 4   LIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++D   V+          G +  +  +     E  Q+  R D+  ++  L   G    +
Sbjct: 9   VVEDDPAVRTVVADHLRLAGCLVSQHRDGARAWEAFQAD-RPDLLVLDRMLP--GLSGDD 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S VP+I ++    L+  +D  +SG DD + KP   RE+  RV A  RR   S
Sbjct: 66  LCRRVREVSTVPIIMLTALDGLENRIDGLESGADDYLAKPFSLRELQLRVNAQLRRNTPS 125

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   + GP R+ +  R   +      L  RE  ++ YL+ N G+ V++ +I   ++  
Sbjct: 126 EVDLVIDAGPFRIDAAHRRVWIGDREITLTTREYELMLYLVRNPGRVVSRDEILREVWRW 185

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
                + + V  H+ +LR+K+  +      + ++   GY   W
Sbjct: 186 G--FGDASTVTVHVRRLREKIESDPRNPVYLQTEWGAGYRFGW 226


>gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans]
 gi|133739701|emb|CAL62752.1| Transcriptional regulatory protein TctD [Herminiimonas
           arsenicoxydans]
          Length = 233

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D +++ DG        G   +   +    +   S+   D+  ++  L       L
Sbjct: 3   ILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLP--KMSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +RA  S++P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+   +G   + + R LGY ++
Sbjct: 180 EWSEEVSNNAIEVYVHRLRKKIE--IGGLRIATVRGLGYCLE 219


>gi|222056633|ref|YP_002538995.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221565922|gb|ACM21894.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 225

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 101/225 (44%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G         +    L+++  E    I   L+  G    
Sbjct: 4   ILVIEDERDLAELIAFNLEKEGFRC--LREADGTSGLETARSELPDLILLDLMLPGLMGT 61

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ +I++ +   + +P++ ++        +  F+ G DD + KP   RE+L R+ A+ RR
Sbjct: 62  EICKILKKNEKTATIPIMMLTARGEEIDRVVGFEVGADDYIVKPFSIRELLLRIRAVLRR 121

Query: 119 LKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +    +   GP+ + ++     ++ E   L   E ++L  L+  RG+  ++  +   
Sbjct: 122 AAPAAPACKLVIGPVHMDTERHQVLIENEEITLTTTEFKLLLNLVERRGRVQSRETLLQD 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G ++   +   V++H+++LR KL      + + + R  GY ++
Sbjct: 182 VWG-YNYVGDTRTVDTHVTRLRTKLGQAG--EMIKTIRGFGYKME 223


>gi|329938569|ref|ZP_08287994.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302542|gb|EGG46433.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 243

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 12/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +    S         + R D   ++  L  +    L 
Sbjct: 19  LVVDDEPDLAEVVTGALRYEGWEVRSAASASAALCEARAFRPDAVVLDIMLPDR--DGLS 76

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+    V ++ ++   +++  +    +G DD V KP    E++AR+  + RR  +
Sbjct: 77  VLRDLRSGQPHVCVLFLTARDTVEDRITGITAGGDDYVTKPFSLGELVARLRGLLRRAGM 136

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  RA       G + +  D  +    G+   L   E ++L  LM +  + ++KTQ+   
Sbjct: 137 TRERAADSLLVVGDLELDEDAHEVTRGGDPVDLSPTEFQLLRCLMRHPRQVLSKTQLLDL 196

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           ++  +D   + +VVE +IS LRKK+ +  G DP + + R  GY +
Sbjct: 197 VW-SYDFGGQAHVVELYISYLRKKIDS--GRDPMIHTVRGAGYVL 238


>gi|317404886|gb|EFV85256.1| winged helix family Two component Transcriptional regulator
           [Achromobacter xylosoxidans C54]
          Length = 221

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 103/220 (46%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +     A  G  G  ++   SL   +    ++      ++  L   G+ V 
Sbjct: 3   ILLVEDDASIASAIQAGLGLQGFVVDAVGSLRQADLAVGTSHASACVLDLCLPD-GDGVT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L +       +P++ ++   S+   +    +G DD V KP    E+ AR+ A+ RR   
Sbjct: 62  LLAKWRARRQDLPVLVLTARSSIAQRVAALRAGADDYVLKPFDLDELAARLQALIRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S +R + G + ++    +  + G    L RRE  +L+ L+ + G+ +   Q+  ++YG 
Sbjct: 122 HSADRIDHGRLTLYLSRGEVLLDGARVTLQRRELALLKTLLQHPGQILTMDQLRDSLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD+ VE N V  HI KLR+KL    G   +++ R  GY +
Sbjct: 181 FDDRVESNAVNVHIHKLRRKL----GAGLIETVRGWGYRL 216


>gi|266620348|ref|ZP_06113283.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
 gi|288868060|gb|EFD00359.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
          Length = 229

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++           G  ++     +   +  +    DV  ++  L       L
Sbjct: 3   ILLVEDDKVLCSTVAMQLEQAGYQVDQCCRGDDALYYATEYPYDVIILDRMLPS--LDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + IR  S   P+I  +    L   +D  D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  SLLQAIRQKSIMTPVIITTALDGLGDRIDGLDAGADDYLVKPFAVEELLARIRAVTRRPG 120

Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQG---EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            + + A    G + + +   +    G   E   L  RE  +LEYLM N G+ + +  I S
Sbjct: 121 RTADTASLAVGNLSLDAVKHELTRNGAESETVTLSGRESSLLEYLMRNAGRTLPRNAILS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++G  D  VE   ++++I  LR++L++  G   + +   +GY ++
Sbjct: 181 YVWGP-DSEVEAGNLDNYIYFLRRRLKSLHGNAKIQTVHGVGYRLE 225


>gi|114777962|ref|ZP_01452876.1| Two comoponent transcriptional regulator, winged helix family
           protein [Mariprofundus ferrooxydans PV-1]
 gi|114551749|gb|EAU54301.1| Two comoponent transcriptional regulator, winged helix family
           protein [Mariprofundus ferrooxydans PV-1]
          Length = 227

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + +        +G  +   +            + +++ ++  +   G+  +
Sbjct: 3   ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMP--GKNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R  S +P+I ++        +   + G DD + KP + RE+ AR+ A+ RR   
Sbjct: 61  DLLRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDT 120

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       G +      R     GE   L   E  IL  LM + G+ V+K ++  A
Sbjct: 121 QQESDDKQETRFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSKYELSQA 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
             G      +   ++ HI  LRKK+      +  + + R +G+
Sbjct: 181 ALGKRHGPFD-RTLDVHIGHLRKKISAADNTEARIKTVRSVGW 222


>gi|332976206|gb|EGK13070.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 227

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +  ++  S+   +       L  +   D+  ++  +       +
Sbjct: 5   ILIVDDEEEMLSMLTLILEEE-FSVTPASDGVEAVKLLQNRVFDLCILDIMMPR--LDGM 61

Query: 62  ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+  ++ R  +++P+I +S     +  +   + G DD + KP    E++ARV ++ RR  
Sbjct: 62  EVLHVLNREQNRIPVILLSARADTRDRVAGLEGGADDYITKPFEPAELVARVKSLLRRAG 121

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        IR+   GR      +   L R E  +L  L  + G+  ++ ++   I
Sbjct: 122 SGPGMGGAEPMPGIRIDHTGRTAFAGEKELRLTRTEFDLLATLAGSPGRAWSREELVERI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +D   E   V++H+  LR+KL+      D +D+    GY 
Sbjct: 182 WG-WDFPGEVRTVDTHVKNLREKLKQAGASPDLIDTVWGYGYK 223


>gi|225408012|ref|ZP_03761201.1| hypothetical protein CLOSTASPAR_05233 [Clostridium asparagiforme
           DSM 15981]
 gi|225042445|gb|EEG52691.1| hypothetical protein CLOSTASPAR_05233 [Clostridium asparagiforme
           DSM 15981]
          Length = 234

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D    +   DG   E   + +    +++       A+   ++      L
Sbjct: 5   ILLVDDEKDILDLLEEVLRRDGFR-EIRRAKDGAGAIRACREFLPDAVVLDIMLPDMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR  S   ++ +S        +     G DD + KP   RE++ RV A  RR + 
Sbjct: 64  EVCKQIREFSYCSILFLSSKNDDIDKILGLSCGGDDYITKPFSPREVVFRVKAQLRRQQY 123

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +      GPI V  +       G    L  RE  +L  L+ +  K ++K +++
Sbjct: 124 QGAGPAAAGTLLTAGPISVDRESGRAYKDGRELSLTGREFLLLACLVEHADKIISKERLY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             ++G +  A+ +N +  HI  LR+K+ +       + + + LGY +
Sbjct: 184 EQVWGAY-SAICDNTIMVHIRHLREKIEDSPSSPRQLVTVKGLGYKL 229


>gi|138893961|ref|YP_001124414.1| transcriptional regulatory protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265474|gb|ABO65669.1| Transcriptional regulatory protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 220

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 11/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L +D   + +  + L    G+  ++     E       +   DV  ++  L       +
Sbjct: 4   LLAEDDLHLWELIVHLLKKKGIDHIDWVQEGEDAYDYAMAEFYDVVVLDWMLPN--GDGV 61

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R +R +     ++ ++   ++Q  +   ++G DD + KP    E++AR+ A+ RR  
Sbjct: 62  DICRRLRQNGYTGAILILTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRTF 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +           +           E   L  RE ++L+ L+ N+G+ V +  I   ++
Sbjct: 122 VPLQEETVTFHGFTLNRTSHTLHRNNEEISLTPREFQLLDLLVQNQGQVVPRETILDRVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D  V    +++ I  LRKKL++    D + + R +GY ID
Sbjct: 182 G-WDADVSMKTIDATIKLLRKKLKD----DVIQTVRGVGYKID 219


>gi|326795781|ref|YP_004313601.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546545|gb|ADZ91765.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 232

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD A + +     F  +G  +    +        +    D+  ++  +        
Sbjct: 4   LLLADDDARLSELVKEYFDGEGYEVTHAWNGREALDCMAMEMPDIVILDVMMPE--LDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + IRA S VP+I ++        +   + G DD ++KP + RE+LAR+ AI RR   
Sbjct: 62  DTLKHIRAKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRATQ 121

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +       +   + +    R   V GE+  L   E  +LE L+   G+ + K ++   
Sbjct: 122 EKDDDPMTDIDMSGVLLRRKDRTVHVTGELVELTTSEYTLLECLLMVPGQVLTKQELSEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             G      +   ++ HIS LRKK+ N + G   + + R +GY  
Sbjct: 182 ALGRKLTMYD-RSLDMHISNLRKKIGNLESGEPRIKTVRGVGYIF 225


>gi|262041138|ref|ZP_06014355.1| two component response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041512|gb|EEW42566.1| two component response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 223

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D AL+  G I     +G   +G ++        +S    +  ++  L    E  L
Sbjct: 3   ILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNHYSLIVLDLGLPD--EDRL 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
               R+ R     P++ ++   +L+  +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  HFLSRMRREKMTQPVLILTTRDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N    G +R+    R   +      L  +E  +L  LM   G  V +  +++ IY 
Sbjct: 121 NQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D     N +E HI  LR+K+    G   + + R  GY +  N
Sbjct: 180 SWDNEPATNTLEVHIHNLREKI----GKSRIRTVRGFGYMLANN 219


>gi|225414512|ref|ZP_03761701.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme
           DSM 15981]
 gi|225041976|gb|EEG52222.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme
           DSM 15981]
          Length = 243

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 102/227 (44%), Gaps = 9/227 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++     +   +G       S +    L  + + D+  ++  + G  +   +
Sbjct: 17  LIVDDDPAIRKLLTKVVEGNGFKSMTAASGQEAVALAQNRKFDLILLDIMMNGV-DDGFD 75

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +RA  + +P++ +S       TL   D G DD + KP +   + A++ A+ RR K 
Sbjct: 76  AIRSLRATGNDIPIVILSGRTEDFDTLYGLDIGADDYITKPFNPVVLGAKIKALIRRNKK 135

Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++N    GP R  +   +     ++ PL  +E  +++  ++N G+   K Q++  +
Sbjct: 136 AAYNAHNFITAGPFRYSNMTLEFFKNEQLIPLSSKENVMMKLFISNVGRVFTKEQLYELV 195

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +G  +  V+EN +  +IS LR K+ +       + +   LGY    N
Sbjct: 196 WG--NSIVDENAIMVYISHLRNKIEDNPKSPRYIKTVWGLGYKFTVN 240


>gi|239818155|ref|YP_002947065.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239804732|gb|ACS21799.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 223

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 111/223 (49%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ D  +      G +++   N  + +  L + +  D+  ++  L       
Sbjct: 3   ILIAEDDQVLADALLRSLRTSGAAVDHVANGSQADTALMTHSEFDLLILDLGLPN--LHG 60

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +E+ + +RA  SQ+P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  IEILKRLRARGSQLPVLVLTAADSVEERVKGLDHGADDYMAKPFSLQELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  ++N    GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGATSNTIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 -EWGEEVSLNAIEVYIHRLRKKIEK--GPVRIATVRGLGYCLE 220


>gi|254427529|ref|ZP_05041236.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196193698|gb|EDX88657.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 240

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 99/224 (44%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G+ +   +  E       + + D+  ++  L   G   L
Sbjct: 11  IMIVEDDERLADLTCEYLQSNGLDVTVVSDGEEAIRRIRAEQPDLVVLDLMLP--GADGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R+  + P++ ++        +   + G DD V KP+  R +LAR+ A+ RR++ 
Sbjct: 69  TVCREVRSAYKNPILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRRVET 128

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S  R E G + + +  R+  + GE   L   E  +L  L +N G  +++  IF 
Sbjct: 129 DSERDNSPARLEFGALVIDNSAREVTLAGESVDLTSAEYDLLWLLASNAGTVLSRETIFE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            + G+     ++  ++  IS++R K+ +       + + R  GY
Sbjct: 189 KLRGI-QYDGQDRSIDVRISRIRPKVGDDPENPKRIKTVRSKGY 231


>gi|310818000|ref|YP_003950358.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391072|gb|ADO68531.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca
           DW4/3-1]
          Length = 235

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   +    ++G ++E  ++L            DV  ++  L        
Sbjct: 10  ILVVEDDLNLRLTLVDNLEEEGYAVEAASTLAEARAKVRGTAFDVVVLDLMLPD--GDGY 67

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L R +R A +   ++ ++        +  F+ G DD V KP   RE+LAR+ A+ RR  
Sbjct: 68  TLCRELRQAATSSRVLMLTARSLEDDVVKGFEVGADDYVPKPYRLRELLARIRALARRGA 127

Query: 119 -LKVSNNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              VS         RV    R      G+   L R E  +L +L+ + GK + + QI S+
Sbjct: 128 GAPVSTEVLTFDRFRVDLASRRILNATGQALELTRTEFDLLVFLLRHAGKALTRDQILSS 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G  D  V+ + V++ +S LRKKL         + S R +GY +D
Sbjct: 188 VWGE-DVVVDGHTVDNFVSNLRKKLEWTSTSRFEIRSVRGVGYRLD 232


>gi|196229835|ref|ZP_03128699.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196226161|gb|EDY20667.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 221

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         +   S     +        + +  D   ++  L       L
Sbjct: 3   ILIVEDDRKVGQFIERGLSEVAYSGTLVRTCAEARDTLADSPYDAIVLDLGLPD--GDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  R+     P++ +S   +LQ  +   + G DD + KP    E++AR+ ++ RR  
Sbjct: 61  QLLRDWRSSGFNEPVLILSARDALQDKVKGLNLGADDYLAKPFSLEELIARIRSLLRRQG 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E   I++    R  EV+G+   L  RE  +LE  M N+G+ + +T I   ++ 
Sbjct: 121 GKKTTVFEHRAIKLDLLARTVEVEGKRIDLTAREFSLLELFMQNQGRVLTRTMIAEKVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
                ++ N+++ ++ +LRKKL +        + R +GY
Sbjct: 181 SH-SDLDTNLLDVYMRRLRKKLESTPDKQYFKTLRGVGY 218


>gi|238789578|ref|ZP_04633362.1| Transcriptional regulator in 2-component system [Yersinia
           frederiksenii ATCC 33641]
 gi|238722331|gb|EEQ13987.1| Transcriptional regulator in 2-component system [Yersinia
           frederiksenii ATCC 33641]
          Length = 232

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G ++   +  E    L  ++  D+  ++  +  K    +
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLLDNS-IDLLLLDIMMPRK--NGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R H Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  ETLKELRQHHQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S  +          E   +++    ++   +G+   L   E  +L  L  + G+ V++  
Sbjct: 121 SEQQQNIDQGAPTLEVDCLQLNPGRQEASFEGQSLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   K G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPDRKDGLPWFKTLRGRGY 226


>gi|319403541|emb|CBI77122.1| transcriptional regulator BatR [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 240

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +  +       +
Sbjct: 11  IVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTLHPPHLAIFDIKMPR--MDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 69  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRSNA 128

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N               G + +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLPIGTTPASSLKRGDLVMDQERHICTWKNKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A+Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAVYN-DQIYVDDRTIDSHIKRLRKKFKQVDNDFAMIETLYGVGYRF 237


>gi|225573147|ref|ZP_03781902.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039502|gb|EEG49748.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM
           10507]
          Length = 223

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD  L++D    +  +    + E  N  E  E    +    +  ++  +       
Sbjct: 4   ILVADDDYLLRDLIKDILEEKNYEVLEAKNGQEAVEIFNQNPEISLVILDVMMPQ--YDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IR  S VP++ ++     Q  L    SG +D + KP H   +LAR   + R ++
Sbjct: 62  MEVLRRIRLQSNVPVLILTALGDTQNELSSLRSGANDYMAKPFHPEVLLARAENLMRMVR 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++  + G + V        V+G+   L  +E ++L YLM NR   + + QI   ++G
Sbjct: 122 NKSDSHLQVGEVVVDEKKCRVYVRGKEISLTHKEYQLLVYLMQNRDIVLTRDQILEKVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD   +   +++HI  LR  +  K     + + R +GY++
Sbjct: 182 -FDYEGDIRTIDTHIKMLR--MDLKSCGSYIRTIRGMGYTL 219


>gi|119486828|ref|ZP_01620803.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119456121|gb|EAW37254.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 824

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           F++I++ A           + G  ++     E       +   D+  + A L       +
Sbjct: 3   FLVIENDAAQAHQIKKALIEQGYIVDVVIDGEQGWAYVEAFTYDLLLVNAHLP--KLNGV 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + IR     VP++ ++   S    +   ++G+DD + KP   RE+ AR+ A+ R  +
Sbjct: 61  DLCQRIREQGYSVPILLLTVQNSSIDHVACLEAGIDDHLIKPFSPRELFARIRALLRSPR 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N    +   + +    R+   Q     L  +E  +LE  + N  + + +T I   ++ 
Sbjct: 121 QANAPLLKWNSLHLDPISREVTYQQHPLSLSPKEYSLLELFLRNPKRVLTQTAILEHLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F+    E+ V +HI +LR+KL+       +++   +GY +
Sbjct: 180 SFESQPNEHTVRAHIKRLRRKLKTVNADKIIETVYGVGYRL 220



 Score = 93.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 1/143 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKV 60
            + +DD  +  +  + L    G+ +   +    F E L+ +A E +          G ++
Sbjct: 530 ILAVDDDPVTLNRLLELLPSYGLEVTPLDDPRLFWETLEKTAPELLILDLEMPFFNGVEL 589

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R  R+ + +P++ +S     QT  D + +G DD ++KP    E++ R+     R+ 
Sbjct: 590 CQTVRTDRSWNALPILFLSARKEPQTIQDIYQAGADDYISKPFAEAELITRIFNRLDRIH 649

Query: 121 VSNNRAETGPIRVFSDGRDPEVQ 143
           +  + AET PI   ++ R     
Sbjct: 650 LLRSLAETDPITGLANRRRSTHD 672



 Score = 57.6 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 52/159 (32%), Gaps = 18/159 (11%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + +       +  + L+    LE    +      D+  ++       +    
Sbjct: 406 LVIDDDLELTEQLQRAAINWNIQLDVITQLEKARLILQETPPDLVLLDLVFPDHQDGGFV 465

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   ++   S++P++  +    +         G +  ++K     ++L  +  I +    
Sbjct: 466 LLEELQHKFSELPVLVWTVRDDMSDRATVARLGGNAFLSKSASCDQVLTTIKDILQSTPT 525

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
           ++ +                V  +   L     R+LE L
Sbjct: 526 ASTQI-------------LAVDDDPVTLN----RLLELL 547


>gi|118443185|ref|YP_877407.1| two-component response regulator [Clostridium novyi NT]
 gi|118133641|gb|ABK60685.1| two-component response regulator [Clostridium novyi NT]
          Length = 234

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 86/227 (37%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +   +    +  S+    S   +E L+   ++    I   ++       
Sbjct: 5   ILVIEDDVEIANIIQSHLTRENYSVNW--SSTGKEGLEDFKKDTYDLIILDIMLPEIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S VP++ +S        +     G DD + KP    E+ ARV    +R K 
Sbjct: 63  TVCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKG 122

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            N + +          + +  D     +  +   L  +E  +L  L  N  K   K +++
Sbjct: 123 YNKKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKKELY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             ++   +     N +  H+  LR+KL++ +     + +    GY  
Sbjct: 183 ENVWNQDNLEGN-NTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKF 228


>gi|148254647|ref|YP_001239232.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406820|gb|ABQ35326.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 241

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +E   +    + +    R D+  ++  L   GE  L
Sbjct: 8   LLMVEDDPEISRLVRDFMRREGFEIEVAENAAAMDAVLRRLRPDLIILDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ +S        +   + G DD + KP   RE+LARV A+ RR + 
Sbjct: 66  SICRRLRQSDDIPILMLSAKSDEIDRVVGLELGADDYMVKPFGPRELLARVRALLRRAQA 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQ--------GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S  R  +          D + +             L   E  +L   +    + +++ QI
Sbjct: 126 SPRREASRRFAFDRFVLDVDARSIETVSGGDAPIQLTSAEFDLLACFVQRPRRVLSRDQI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218
                G   E  +   V+  IS+LR+KL     G   + + R  GY
Sbjct: 186 LDFTRGRSAEPFD-RTVDMLISRLRRKLEAASPGTSLITTVRNGGY 230


>gi|302670595|ref|YP_003830555.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395068|gb|ADL33973.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 225

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 104/226 (46%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----AREDVSAIEAFLIGKG 57
            +++DD + ++         DG  +     +E E+  Q+       +D+S I   ++   
Sbjct: 6   ILVVDDESRMRKLVKDFLVKDGYLV-----VEAEDGQQALDIFYEDKDISLIILDVMMPK 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+ + IR +S+VP+I ++     +  L  F+ GVD+ ++KP   + + ARV+AI R
Sbjct: 61  RDGWEVCKEIRTNSKVPIIMLTAKAEERDELLGFELGVDEYISKPFSPKILAARVSAILR 120

Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           R   +  N   E G I V        V G+   L  +E  +L +   N+G  +++ +I +
Sbjct: 121 RTNQAANNQIMEIGGIVVNKVAHSVLVDGKEIDLSYKEFELLSFFFENKGVALSREKILN 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  +D   +   +++H+ K   + +     D + +   +GY  D
Sbjct: 181 NVWN-YDYFGDARTIDTHVKK--LRGKLGKKGDMIKTIWGMGYKFD 223


>gi|291536113|emb|CBL09225.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 224

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +    + +  E ++   +ED   I   ++       
Sbjct: 4   ILVVDDEDKIRAIIRKYGEFEGYEI--AEAHDGMEAVEICRKEDFDLIILDVMMPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
              R IR   ++P+I +S        +  F+ G+DD V KP   RE++ RV  +  R   
Sbjct: 62  STCREIRKFKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNNK 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++  +   +   + V   GR   V G+   +  +E  +L YL+ NR   + + ++ + 
Sbjct: 122 KDVRGGHEIFQAEGLVVDFTGRTVTVDGKRVEMSPKEYELLFYLVRNRNIALDREKLITE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  +++HI  LR  L        + + R +GY  +
Sbjct: 182 VWG-YDYYGDDRTLDTHIKLLRSSLGEY--RKFLVTLRGVGYRFE 223


>gi|291286699|ref|YP_003503515.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290883859|gb|ADD67559.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 229

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        +G S++  ++ +        +  D+  ++  L G G    
Sbjct: 7   ILVIDDDVELCELLSEYLEAEGFSIKAVHNGKEGASTVIDSDFDLIILDVMLPGMG--GF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR+    P++ ++        +   + G DD + KP + RE+LAR+ AI RR   
Sbjct: 65  DVLKTIRSVKMTPILMLTAKGDDIDKILGLEIGADDYLPKPYNPRELLARIKAILRRYTS 124

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +          G   + +       +G    L   E  ILE L+ N G+ V + +I   
Sbjct: 125 PHYSEKAQELTGGNFVLDTGKLTASYRGFPLGLTVVEFNILEMLLINIGRVVTREEIALK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G    + +   ++ HIS +RKK       D + S R  GY +
Sbjct: 185 VLGRELSSFD-RSIDVHISNIRKK---ASDTDIIKSIRGAGYQL 224


>gi|239820125|ref|YP_002947310.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239804978|gb|ACS22044.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 229

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 103/223 (46%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D  +     +G ++    +    + L+ + R D++ +   L+  G   L
Sbjct: 5   ILIVEDDPRVADFLVRGLKAEGFAVTHART--GPQGLELARRGDLALLILDLMLPGINGL 62

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL +  RA   Q P++ ++   + +  ++    G DD + KP    E+LAR+ A+ RR +
Sbjct: 63  ELCQTFRAEGGQTPVLMLTAMSTTEDKVNGLRLGADDYLTKPFDFEELLARIEALLRRGR 122

Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + +  +    E  G+   L  +E   LE LM+  G+  ++ +I + +
Sbjct: 123 DLRLRVTTLRVANLVLDRERMRVERAGQPITLTAKELAFLELLMSAPGRVYSRERILATV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  ++ +  N+V+ ++ +LR K+        + + R LGY I
Sbjct: 183 WGTHEDPL-TNIVDVYVRRLRMKIDGDHAVQLLQTVRGLGYRI 224


>gi|163816850|ref|ZP_02208213.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
 gi|158448107|gb|EDP25102.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
          Length = 224

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   +      +   +  S++  +N  E  +++ +   + V  ++  +       
Sbjct: 3   LLLAEDEKALSSALQVILKHNNYSVDAVYNGQEAYDYIMAGVYDGV-ILDVMMP--KMDG 59

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
             +   IR     VP+I ++        ++  D G DD + KP   +E+LAR+ AI RR 
Sbjct: 60  FTVLSKIRSEGCDVPVIMLTAKSETDDKINGLDLGADDYLAKPFDTKELLARIRAITRRK 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +     G   + S   +    G    L  +E +I+E LMAN+   ++   +   I+
Sbjct: 120 SEAVSTDVIYGDCTLNSLNYELSSGGGSVKLQNKEYQIMELLMANQKSIISAELMMEKIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G +D   E +VV  +IS LRKKL        + + R  GY+++++
Sbjct: 180 G-YDTDTEISVVWVNISYLRKKLGQIGSKVSIKAVRNQGYTLEYS 223


>gi|157363824|ref|YP_001470591.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157314428|gb|ABV33527.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 228

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G  +      E    +      D   ++  L   G    E
Sbjct: 9   LIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLP--GINGFE 66

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
               +R     VP++ ++   ++   +     G DD + KP   RE+LAR+ ++ RR  +
Sbjct: 67  FVEHLRESLINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRSNI 126

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +         +++ S  R   V+  V  + +RE  +LE  + N G   ++ +I   ++  
Sbjct: 127 TKGEEINFKGLKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKVW-E 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++ ++ NV++ +I  LR KL+       + +    GY  
Sbjct: 186 NEKIIKSNVIDVYILYLRNKLKPYGYDRYIQTVPGYGYRF 225


>gi|291285833|ref|YP_003502651.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str.
           CB9615]
 gi|209748784|gb|ACI72699.1| catabolic regulation response regulator [Escherichia coli]
 gi|290765706|gb|ADD59667.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str.
           CB9615]
 gi|320660297|gb|EFX27801.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 229

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G ++E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+   ++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDIVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V +HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVYTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|153954268|ref|YP_001395033.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347149|gb|EDK33685.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 96/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G      D+G  +   +         +S   D+  ++  L        
Sbjct: 4   ILLLEDDKALALGIEFTLMDEGYDVVKCSYAREAVEAFNSEVFDILVLDIMLPD--GNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQVP+I ++        +   D G DD + KP   +E ++R+ AI RR + 
Sbjct: 62  DVCKYVRKKSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFVSRIKAILRRTES 121

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +N          I + ++  +   +G    L  +E ++L   M N  + +++ +I   + 
Sbjct: 122 NNYKPKIFRCKDIVLNAETLEAYKKGHDLALSMQEYKLLLLFMNNAQRVMSREEILDNLT 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               E  + N +  +I ++R+K+  +    + + +KR  GY  D
Sbjct: 182 DGSGEYFDTNTLSVYIKRIREKIEQDSSNPEYIKTKRGFGYQWD 225


>gi|89895181|ref|YP_518668.1| hypothetical protein DSY2435 [Desulfitobacterium hafniense Y51]
 gi|219669611|ref|YP_002460046.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89334629|dbj|BAE84224.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539871|gb|ACL21610.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 226

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALF-GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   +++     F       +E   +    + L+S+  +D   +   ++      
Sbjct: 4   ILLVEDDLQLQEIIEDYFTAKSAGEIEMVCAANGADGLESAQEKDYDLVLLDVMLPEVDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R +R HS VP++ ++   +    L  +  G DD + KP    E+ A+  ++ RR K
Sbjct: 64  FTICRELRRHSDVPIMFLTARQAEGDRLHGYGLGCDDYMIKPFSLAELYAKANSLVRRAK 123

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V ++    G I +        V G V  L  +E  +L+ LM N GK V +  + + I+
Sbjct: 124 GMVRDDLMSVGGISLDPYRGTVSVDGRVVELAPKEYALLKLLMENAGKIVTRETLLARIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D +  + VV++HI KLR+ L    G + + +    GY ++
Sbjct: 184 G-YDFSGNDRVVDNHIKKLRQTLGK--GAEQIKTVVKSGYRLE 223


>gi|323529593|ref|YP_004231745.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
 gi|323386595|gb|ADX58685.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
          Length = 228

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D   +   + G  ++     E    L +    DV  ++  L  +     
Sbjct: 3   LLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMHLATEFDYDVIVLDVMLPKR--DGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R     P+I ++    +   +     G DD + KP    E++ R+ A+ RR + 
Sbjct: 61  SVLKALRMRKSTPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTRS 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + V   GR     G    L  +E ++L  L   +G  ++KT I   ++ +
Sbjct: 121 QESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 -NFDSHTNVVETAIKRLRAKLDGPFPSKLLHTVRGMGYVLEV 221


>gi|210616118|ref|ZP_03290951.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787]
 gi|210149938|gb|EEA80947.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787]
          Length = 226

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  ++          L  S    +  ++  L        
Sbjct: 4   ILLIEDDEHIAQSIQFFLEGEGFQIKVAAMARQAMELLKSEDFQLVILDVTLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   I+A  ++P+I ++     +  +  F+ G D+ + KP   RE+L+R+  + R   +
Sbjct: 62  ELFEEIKARKELPVIFLTALDGEEEIVKGFELGADEYITKPFRPRELLSRIRNVIRHTGI 121

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    +   +++  +        E   L   E +IL     N+G+ + + QI S I+
Sbjct: 122 LEENRQEIQIEHVKMNLEQGAVYKNNERIELTALEYKILALFFENKGRILTRGQILSGIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
                 V  N +  +I +LR+K+  +      + + R +GY 
Sbjct: 182 DESGNFVNNNTLTVYIKRLREKIEEDPNAPKIIKTVRGMGYK 223


>gi|168180268|ref|ZP_02614932.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182668736|gb|EDT80714.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+++  F + +  + L      D+  I   ++      ++
Sbjct: 7   LIVDDEDEIREAIEIYLKNEGITV--FKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR +  +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVNL 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + ++   G + +    +   V G+   L   E RILE LM N+G+  +  +I+  
Sbjct: 125 GNYKETEDKVVAGALILDKKRKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 AWKEPYYNGE-NTVAVHIRRIREKIEINSREPRYLKVVWGIGYKI 228


>gi|299139571|ref|ZP_07032745.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598499|gb|EFI54663.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 225

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        + G  +           L S        ++  L  +    +
Sbjct: 3   LLLVEDEPEIQSFVKQSLMEAGYEVHTAEDGSAATELASKHVYHGLIVDLGLPDQ--DGI 60

Query: 62  EL-PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L  ++ R+    P++ +S   S+   +   + G DD + KP    E+LAR+  + RR  
Sbjct: 61  DLILQLRRSGVTSPVLILSARRSVDDRVKGLELGGDDYLTKPFAIAELLARMRNLLRRNS 120

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  R     + +    R      EV  L  +E  +LEYL  + G+ V ++ +   +
Sbjct: 121 SQAEDAMRLRVCDLELDMLKRRATRGDEVLNLSPQEFVLLEYLCRHAGRVVTRSMLLKEV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G+     + NVV+ HI +LR K+        + + R +GY +
Sbjct: 181 WGMR-IQPDTNVVDVHIYRLRGKIDTAGREPLIKTLRGIGYVL 222


>gi|255656273|ref|ZP_05401682.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|296450286|ref|ZP_06892046.1| response regulator [Clostridium difficile NAP08]
 gi|296878699|ref|ZP_06902703.1| response regulator [Clostridium difficile NAP07]
 gi|296260847|gb|EFH07682.1| response regulator [Clostridium difficile NAP08]
 gi|296430273|gb|EFH16116.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +  + + +  + L+     D+  I   ++      +
Sbjct: 4   ILVVDDDKEIVDSIEIYLKSEGFKI--YKAYDGMKALEIITENDIHLILMDIMMPKLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR    +P+I IS        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  KATVKIREERNIPIILISAKSEDTDKIMGLNIGADDYITKPFNLLELIARVKSNLRRYVT 121

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N         ++G + + +  ++ ++ GE   +   E +I+E L+ N+G+  +  +I+
Sbjct: 122 LGNYEDTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++   +    EN V  HI ++R+K+  N      +     +GY I+
Sbjct: 182 EKVWNE-ESFNSENTVAVHIRRIREKIEINPKEPRFLKVVWGVGYKIE 228


>gi|169347039|ref|ZP_02865981.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169296722|gb|EDS78851.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 230

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   A    +G S+  F+    EE L+      +  I   L+       
Sbjct: 3   ILLVDDEEKIIEVLEAYLKKEGFSV--FSCSNGEEALKIFDNNKIDLILLDLMLPDLSGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ ++IRA S VP+I I+     +  L+ FD G DD V KP   ++++AR+ AI RR   
Sbjct: 61  EVCKVIRAKSCVPIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRRSTP 120

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N          G +++  D R+  V+ E+  L   E  IL  L +   K   + +I  
Sbjct: 121 CPNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIFTRGEIIE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            + G   ++ +  V++SHI  LR K+         + +   +GY  +
Sbjct: 181 LVLGDKSDSFD-RVIDSHIKNLRGKIEENTRKPKFIVTVYGVGYKFE 226


>gi|296187359|ref|ZP_06855754.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|296047881|gb|EFG87320.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++  +  F  +G ++E   +   +E L+    +  S I   ++       
Sbjct: 5   ILIVDDDRDIREMLVNYFSKEGYAVE--QACNGDEGLKVLKAKSFSLILLDVMMPKMDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  S +P+I ++        +  F +G DD + KP    E+  RV AI +R K 
Sbjct: 63  TMLCKLRESSNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKRTKS 122

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +NN  +       I + +     +       L  +E  IL  L  N+G+  +   ++  +
Sbjct: 123 NNNPCQDIIKIKDIEINTSEYTVKKDNLEIILTPKEYEILYTLAINKGRVYSTKMLYELL 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +        +N V  HI  LR+KL + +     + +   +GY I+ +
Sbjct: 183 W-KDTFMQNDNTVTMHIKNLREKLGDSVKQGKYIKTIWGVGYKIEKD 228


>gi|262273559|ref|ZP_06051373.1| two-component system response regulator OmpR [Grimontia hollisae
           CIP 101886]
 gi|262222537|gb|EEY73848.1| two-component system response regulator OmpR [Grimontia hollisae
           CIP 101886]
          Length = 238

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L S     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRSLLERYLSEQGFQVRSVANAEQMDRLLSRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A++Q+P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRQANNQLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V             E G  R+    R+     E   L   E  +L+ L+ N  + +++ +
Sbjct: 125 VEAPGAPASEEKVVEFGQFRLNLGTREMFRNDEPLTLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMIEEDPSKPRYIQTVWGLGYVF 232


>gi|167584571|ref|ZP_02376959.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 220

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L++D  L+  G       +G +++     +     L+++    +          G  VL
Sbjct: 4   LLVEDDPLIGSGLEHGLKQEGFAVDWVKDGDAASLALRTTGYGLLLLDLGLPNRDGLSVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
              R  R    +P I I+    L   +   DSG DD + KP    E+LAR+ A+ RR   
Sbjct: 64  AALR--RRDETLPAIVITARDGLSDRIAGLDSGADDYLVKPFALEELLARIRAVNRRHAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      GP+R+        +      L  +E  +L  LM   G  +++ Q    +Y  
Sbjct: 122 RAQTTLAVGPLRLDPVKHLVWLDDAEVTLSPKEFVLLHELMREPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDMIRTVRGVGYRI 216


>gi|157412484|ref|YP_001483350.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387059|gb|ABV49764.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 263

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++D         G  ++        + L      D+  ++  L       L
Sbjct: 8   ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSV--DGL 65

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR
Sbjct: 66  TLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRR 125

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +             GP+ +  +  +         L   E  +L  L+   G+ V+  
Sbjct: 126 TNRAQLNSSNQQEILNYGPLTLVPERFEAMWFESPIRLTHLEFELLHCLLQRHGQTVSPA 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I   ++G ++   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 186 LILKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPVYIKTVYGAGYCLE 235


>gi|313887137|ref|ZP_07820833.1| response regulator receiver domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923366|gb|EFR34179.1| response regulator receiver domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 233

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
            +L+DD   +++        +G  +    +   EE L+       +  ++  +   G   
Sbjct: 8   LLLVDDEEDLREILTFNLAGEGYQVS--TAANAEEALKMPLEEYHLLILDVMMP--GMSG 63

Query: 61  LELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +L  +IR   +   P+I ++   +    L  F+ G DD + KP   +E+ AR+ AI  R
Sbjct: 64  FKLAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQAILMR 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L    ++ E G + +  D +   V GE   L ++E  ILE L  +  K  ++ +I
Sbjct: 124 SLQGGLDFEESQIEIGTLLIDLDAKQVFVNGEPIDLTKKELEILELLARDPSKVFSREEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++   D  V E  ++ HI+++RKKLR       + ++   GY +
Sbjct: 184 LDRVW-REDVFVMERTIDVHITRIRKKLRGSGIK--IINRSGFGYCL 227


>gi|300771736|ref|ZP_07081610.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761402|gb|EFK58224.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 226

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V         + G   +   + +     + + + D S I   +I      L
Sbjct: 3   ILIIEDDLRVAQLIERAVREQGF--QTMLAYDGMSGKKLALQHDFSLIITDIILPKIDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +L + +R     +P+I ++   +    ++ FD+G DD + KP   RE++AR+ A+ +R  
Sbjct: 61  DLCKEVRQLKPDLPIIMLTALGTTDNKVEGFDAGADDYLVKPFEMRELIARIRALLKRKD 120

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V++   +   + +  + +  +  G    L  +E  +L+Y +++  K ++++ I   
Sbjct: 121 QSASVASFVLKYHDLEMNLNTKMVKRAGIEIELTPKEFNLLQYFLSHPEKVLSRSDIAEN 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++         N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 181 VWETH-FDTGTNFIDVYINYLRKKIDKDFNHKLIHTKPGMGFIL 223


>gi|229489584|ref|ZP_04383447.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
 gi|229323681|gb|EEN89439.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
          Length = 232

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 99/230 (43%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            + I+D   V +         G ++      + +F++ L ++   D+  ++  L   G  
Sbjct: 4   ILFIEDDPAVAEAITLGLNRLGHNVSHRPDGNGDFDDALGAT---DLVLLDLGLP--GAD 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E+ R IR  S +P+I ++       T+   ++G DD V KP   R + AR+ A+ RR 
Sbjct: 59  GYEICRRIRTRSSIPIIILTARSDDIDTVAGLEAGADDYVVKPASPRVLDARIKAVVRRS 118

Query: 120 KVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
             +  R +        G + +          G +  L   E R++  L  N G+ +++ Q
Sbjct: 119 APATTRPDATPGAETFGDLELDRSSLQVRKAGMLLTLTPTELRLILALTENPGQVLSRRQ 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           + SA +   +   +  +V++ + +LR K+ +       +++ R  GY  +
Sbjct: 179 LLSAAWDQ-EYLGDSRIVDAAVQRLRGKIEDDPAAPTVIETVRGFGYRFN 227


>gi|222084364|ref|YP_002542893.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221721812|gb|ACM24968.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 239

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +  ++E  +S    +   +    D+  ++  L   GE  L
Sbjct: 6   LLLVEDDREIRALLEEFLTREDYTVEAVDSAAAMDRALARGFPDLIILDLMLP--GEDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R IR  S+VP++ ++        +   + G DD + KP + RE+LAR+ AI RR   
Sbjct: 64  SACRRIRTRSRVPILMLTAKSEDIDRILGLEMGADDYLGKPFNPRELLARIRAILRRAGP 123

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQ 172
                   S  R     + V  DGR  EV+GE    L   E  +L   +    + +++ Q
Sbjct: 124 ERPEEVVGSRRRKSFAGLIVDLDGRAIEVEGEGPMRLTTAEFDLLVCFLERPRRVLSRDQ 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSI 220
           +     G   +  +   ++  +S+LR KL   L  G   + + R  GY +
Sbjct: 184 LLDWTRGRGADPFD-RTIDVTVSRLRTKLAQYLPDGAQIITTVRNAGYLL 232


>gi|219854871|ref|YP_002471993.1| hypothetical protein CKR_1528 [Clostridium kluyveri NBRC 12016]
 gi|219568595|dbj|BAH06579.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 236

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 96/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G      D+G  +   +         +S   D+  ++  L        
Sbjct: 9   ILLLEDDKALALGIEFTLMDEGYDVVKCSYAREAVEAFNSEVFDILVLDIMLPD--GNGY 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  SQVP+I ++        +   D G DD + KP   +E ++R+ AI RR + 
Sbjct: 67  DVCKYVRKKSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFVSRIKAILRRTES 126

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +N          I + ++  +   +G    L  +E ++L   M N  + +++ +I   + 
Sbjct: 127 NNYKPKIFRCKDIVLNAETLEAYKKGHDLALSMQEYKLLLLFMNNAQRVMSREEILDNLT 186

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
               E  + N +  +I ++R+K+  +    + + +KR  GY  D
Sbjct: 187 DGSGEYFDTNTLSVYIKRIREKIEQDSSNPEYIKTKRGFGYQWD 230


>gi|254420558|ref|ZP_05034282.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196186735|gb|EDX81711.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 226

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D A +         D G +++     E   +L  +   DV  ++  L    G  VL
Sbjct: 4   LLVEDDADLSRQLKGALADAGYAVDHAADGEEAWFLGDTEPYDVIVLDLGLPKIDGVSVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E  R  R     P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ RR   
Sbjct: 64  E--RWRREGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++     G +R+        V GE   L   E R+L Y+M ++G+ +++T++   +Y  
Sbjct: 122 IASATLSCGGLRLDPRAARANVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYDQ 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + N +E  I +LRKK+    G D +++ R LGY +
Sbjct: 182 -DFDRDSNTIEVFIGRLRKKI----GSDRIETVRGLGYRL 216


>gi|77459741|ref|YP_349248.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383744|gb|ABA75257.1| putative two-component response regulator transcriptional
           regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 227

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A+     +A     G+ ++  ++         S   D+  ++  L       L
Sbjct: 4   ILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLDRAVSGNYDLITLDRMLPE--LDGL 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +R      P++ IS    +   +    +G DD + KP    E+ ARV  + RR  
Sbjct: 62  AIVTTLRTMGVATPILMISALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRRQN 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    +   +++     +     +V  L   E ++LE+LM N G+ +++  IF  +
Sbjct: 122 SNGAQPTTLQVADLQLDLISHEARRAEQVLTLLPTEYKLLEFLMRNSGQILSRMMIFEEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +      N+++ HI +LRKK+        + + R  GY I
Sbjct: 182 WG-YHFDPGTNLIDVHIGRLRKKIDPPGNVPLIRTVRGSGYVI 223


>gi|37519591|ref|NP_922968.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210582|dbj|BAC87963.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 222

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +          +G +     +      + S    D+  ++  L   G+  L
Sbjct: 4   ILIAEDETRIAAFLEKGLRANGYTTIVVRNGVEAAQMASCDDFDLMILDLGLP--GKAGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R   + +P+I ++    +   +   +SG DD V KP    E+LARV A  R   
Sbjct: 62  VVLEEMRGRGERLPVIILTARDDIADKVAGLESGADDYVTKPFRFEELLARVRARLRDTG 121

Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +      +G I +    R     G    L  RE  + E  M + G+ +++  + S 
Sbjct: 122 NGRTQEQLVLRSGEISLDLRTRKVSAGGRTVELSAREFTLAETFMRHPGQVMSREHLLSR 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ ++  LR+KL      D +++ R +GY +
Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRRKL----NTDRIETVRGMGYRL 220


>gi|88811133|ref|ZP_01126389.1| DNA-binding response regulator [Nitrococcus mobilis Nb-231]
 gi|88791672|gb|EAR22783.1| DNA-binding response regulator [Nitrococcus mobilis Nb-231]
          Length = 224

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 106/224 (47%), Gaps = 11/224 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D  ++ +G        G +++   S      L   A  D+  ++  L       
Sbjct: 2   LILVVEDDYVLAEGLRRDLKRAGFAVDLTGSAVDAAHLGREALYDLIVLDLGLPD--GAG 59

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R  RA    +P++ ++   +    +D F +G DD + KP H  E+LARV A+ RR 
Sbjct: 60  LEMLRGWRAAGNPIPVLILTARDAWYERVDGFKAGADDYLGKPFHTEELLARVGALLRRA 119

Query: 120 --KVSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +  +   ++  + +  + +   +   +   L   E R+L Y M N  + ++K ++   
Sbjct: 120 HRQQPSGPLQSAGLVLDEEEQKVILPDQQPVRLTATEFRLLRYFMLNPQRLLSKARLTEH 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +Y   D   + NV+E ++++LR+KL    G D ++++R  GY  
Sbjct: 180 VY-AEDGDPDSNVLEVYVNRLRRKL----GSDYIETRRGQGYRF 218


>gi|126464554|ref|YP_001045667.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332560699|ref|ZP_08415017.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|126106365|gb|ABN78895.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|332274497|gb|EGJ19813.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 219

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G + +    +E      ++   D+  ++  L       L
Sbjct: 3   ILLVEDDPGLGGAIRDQISAEGHAADWMTGVEDALAAVATTAYDLVLLDLNLPD--GSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R +RA  +  P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRYA 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + + R   GP+ V    R  +       L +RE  I E L+   G  V+KTQ+   +Y 
Sbjct: 121 GNPSPRLALGPLEVDIADRRIDGPEGEVTLSQREWAIFEALVKRPGSVVSKTQLEETLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E ++S+LRKKL    G D ++++R +GY +
Sbjct: 180 AFDAEVESNTIEVYVSRLRKKL----GRDRIETRRGMGYRL 216


>gi|325262811|ref|ZP_08129547.1| DNA-binding response regulator PhoP [Clostridium sp. D5]
 gi|324031905|gb|EGB93184.1| DNA-binding response regulator PhoP [Clostridium sp. D5]
          Length = 224

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +    +     +  S++            ++A  D   ++  +       L
Sbjct: 3   ILLAEDEPDLNRLIMDKLRAEHYSMDSCRDGRAALDYLAAAEYDAVILDIMMPVV--DGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA    +P++ ++   S++  +   D+G +D + KP    E+LAR+  + R  +
Sbjct: 61  TVLKKLRAQGKNIPVLLLTARDSIEDRVAGLDAGANDYLIKPFAFEELLARIRVLLRTPR 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +         + V  D  +    G+   L  +E  +L Y++ N G  +++ ++   ++ 
Sbjct: 121 DTGGVCCRVDDLEVRLDTHEVSRGGKQITLSGKEFALLRYMIQNEGIVLSREKMEQHLWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV++ +I  LRKK+        + + R  GY +
Sbjct: 181 -YDYPGGSNVIDVYIRYLRKKVDEGYETKLIHTVRGTGYVL 220


>gi|303234315|ref|ZP_07320955.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia
           magna BVS033A4]
 gi|302494568|gb|EFL54334.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia
           magna BVS033A4]
          Length = 220

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++            S+  +     +E L  S  + D+   +  +       
Sbjct: 5   ILVVDDDEQIRSVIETSLKRAQFSV--YTCASAKETLSLSLDQFDLMIFDVMMPD--MDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            EL R +R     P++ ++   +     +    G DD + KP    E+++RV A  RR  
Sbjct: 61  FELCRNVREKVDCPILFLTAKSTEADVAEGLAIGGDDYIRKPFTPLELVSRVKAHLRREE 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V ++    G IR   + ++ +++GE     + E  I E L  ++G+  ++  I   + G
Sbjct: 121 RVHHSYLSFGDIRFLLNAKEIQIKGETIKFTKMEYEICELLARHKGQVFSREHILEQVGG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E+    +VE HI  +RKK  +    DP+ +   +GY  +
Sbjct: 181 FWTESESAAIVE-HIKNIRKKF-STYQLDPIKTIWGVGYKWE 220


>gi|238855525|ref|ZP_04645829.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus jensenii 269-3]
 gi|260665399|ref|ZP_05866246.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282934342|ref|ZP_06339611.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
 gi|313471862|ref|ZP_07812354.1| DNA-binding response regulator ResD [Lactobacillus jensenii 1153]
 gi|238831858|gb|EEQ24191.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus jensenii 269-3]
 gi|239529223|gb|EEQ68224.1| DNA-binding response regulator ResD [Lactobacillus jensenii 1153]
 gi|260560667|gb|EEX26644.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281301592|gb|EFA93867.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
          Length = 240

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 101/245 (41%), Gaps = 40/245 (16%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE----------- 50
            ++++D + V +     F               E+W    AR+ V A++           
Sbjct: 5   ILMVEDDSSVAEMMELFFKK-------------EQWNVDIARDGVEAVDKFKERPDYYDM 51

Query: 51  --AFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107
               L    +  +++ + +RA S+ +P+I ++   S    +   + G D+ V KP     
Sbjct: 52  ITLDLNLPKKDGIQVAKEVRAISESIPIIMLTARDSESDQVLGLEIGADNYVTKPFSPIA 111

Query: 108 ILARVAAIYRRLKVSNN----------RAETGPIRVFSDGRDPEVQGEVFP-LPRRERRI 156
           ++AR+ A++RR  + N              T  +++    R+     +    L  +E  +
Sbjct: 112 LIARIKALHRRAALENTDNDRKAKGDFDIVTNTLKISKIRREVYFLDKQIDGLTPKEFDL 171

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           L  +     +  ++ ++   ++G ++   EE  V++HI KLR+KL   +G   + +   +
Sbjct: 172 LYTMAQKPKQVFSRDKLLELVWG-YEYYGEERTVDAHIKKLRQKLEE-VGPQIIQTVWGV 229

Query: 217 GYSID 221
           GY  D
Sbjct: 230 GYKFD 234


>gi|193071717|ref|ZP_03052617.1| DNA-binding response regulator PhoP [Escherichia coli E110019]
 gi|192954979|gb|EDV85482.1| DNA-binding response regulator PhoP [Escherichia coli E110019]
          Length = 223

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++  +    D++ ++  L    E  L 
Sbjct: 4   LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLLDIAIVDLGLPD--EDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R++   +P++ ++   S Q  ++   +G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   + + + R  GY  +
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221


>gi|323488348|ref|ZP_08093596.1| two component transcriptional regulator, winged helix family
           protein [Planococcus donghaensis MPA1U2]
 gi|323398006|gb|EGA90804.1| two component transcriptional regulator, winged helix family
           protein [Planococcus donghaensis MPA1U2]
          Length = 228

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D       D   + + F+  E   +L      D   ++  L        
Sbjct: 3   LLIIEDDPHLSDTIKETTQDMFHTQQAFD-GEEGLFLAEQNIFDCIILDIMLPY--LNGY 59

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+ +   P+I ++    +   +  F +G DD + KP H  E+L R+ AI RR  
Sbjct: 60  EVLKKLRSQNITTPVIMLTAKDGIGDKIQGFKAGADDYLAKPFHREELLLRLEAIVRRSG 119

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N      +++    +  ++  E   L  ++  +LEYL+ N+   + K QIF  I+
Sbjct: 120 GELKQNTLSFKELKLNIKNKTAQLGEETVKLNGKQFDLLEYLVNNKNIILTKEQIFDRIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G F+      VVE + S LRK L+       + + R LGY +
Sbjct: 180 G-FESDTSTTVVEVYASNLRKTLKKFNYDQYIKTFRGLGYML 220


>gi|319404967|emb|CBI78569.1| transcriptional regulator BatR [Bartonella sp. AR 15-3]
          Length = 240

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +  +       +
Sbjct: 11  IVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTIHPPHLAIFDIKMPR--MDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 69  ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRSHA 128

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N               G + +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLPIGTTSTSSLKRGDLIMDQERHICTWKNKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A+Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAVYN-DQIYVDDRTIDSHIKRLRKKFKQVDNDFAMIETLYGVGYRF 237


>gi|313901323|ref|ZP_07834810.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312953931|gb|EFR35612.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 233

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++    L   +G  + E  N  E  E++      D+  ++  +       
Sbjct: 6   ILVVDDDKEIREIIRVLLTQEGYDVSEARNGREALEYMND--HIDLYILDIMMPY--MDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR HS  P++ ++   + +     F  G DD + KP  + E+L RV A+  R  
Sbjct: 62  YELCEQIRKHSNAPILFLTAKGTQKDKAQGFFKGADDYLAKPFSYSELLVRVKAMLCRFM 121

Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           V   +           +   IR+        V+GE   +   E ++L ++  +R +  + 
Sbjct: 122 VYQGKQAEIEKRYRILQIRDIRIEERDEAVYVKGEKIAMTDLEYQLLHFMATHRNQTFSA 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            ++F +++         N +  HI  +RKK+  +      + +    GY  +
Sbjct: 182 EELFVSVWNEPYFTSANNTLMVHIRNVRKKIEEDARNPKYIKTIWGKGYRFE 233


>gi|302558018|ref|ZP_07310360.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302475636|gb|EFL38729.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 229

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED----VSAIEAFLIGKG 57
            +L++D   V     A+    G  +    S   EE LQ+   E     V  ++  L  + 
Sbjct: 4   LLLVEDDNHVAAALSAVLARHGFDVTHARS--GEEALQALVPEGEGFGVVLLDLGLPDQ- 60

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ R
Sbjct: 61  -DGYEVCGKIRKRTGTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSR 119

Query: 118 R------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R         +      GP+R+    R   V G    L R+E  +L  L    G    + 
Sbjct: 120 RSVPEEATGSTETELRLGPVRIELPTRQVTVNGAPVQLTRKEFDLLALLAQRPGVVFRRE 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI S ++    E      +E H++ LR KLR       +++ R +GY +
Sbjct: 180 QIISEVWRTSWEGTG-RTLEVHVASLRAKLRMPA---LIETVRGVGYRL 224


>gi|315293305|gb|EFU52657.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
          Length = 229

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  + +   +G  +E F               DV  ++  L        EL
Sbjct: 8   LVEDEQGIADTLVYMLQQEGFDVEVFERGLPVLDKARQQVPDVMILDVGLPD--ISGFEL 65

Query: 64  PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R + A H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G   +               L R E  +L+ L+ + G+  ++ Q+  +++ 
Sbjct: 126 STPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWE 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              +  +   V+ HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQDTYD-RTVDPHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|303327856|ref|ZP_07358296.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
           3_1_syn3]
 gi|302862217|gb|EFL85151.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
           3_1_syn3]
          Length = 226

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +++        +G S+    + + ++ L+ + R     I   ++       
Sbjct: 6   ILVVEDESDIRELLRFNLEREGFSV--LEAEDGQKGLELARRHLPCLIILDVMLPALDGF 63

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R +      S +P++ ++        +     G DD V KP   RE++ R+ AI RR
Sbjct: 64  EVSRRLGGQAETSAIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIKAILRR 123

Query: 119 LK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +   E   IR+  D            L   E R+LE L+ + G    + Q+ + 
Sbjct: 124 GGRVAESALLERHGIRLRPDAHTASAGERELVLTATEFRLLEDLLRHAGTVRTREQLLNN 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +        V++H+ +LR KL        +++ R +GY I
Sbjct: 184 VWG-YSFEGYARTVDTHVRRLRSKLGEAAAA--LETVRGVGYRI 224


>gi|317050079|ref|YP_004117727.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316951696|gb|ADU71171.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 232

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G  +   +  E    L  +   D+  ++  +  K    +
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFEVMVASDGEQALNLLDNT-VDLLLLDVMMPKK--NGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  DTLKELRQQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S  +          E   +R+    ++     E   L   E  +L  L  + G+ V++  
Sbjct: 121 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDNETLDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   + G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPERRDGHPWFKTLRGRGY 226


>gi|257465593|ref|ZP_05629964.1| two component transcriptional regulator [Actinobacillus minor 202]
 gi|257451253|gb|EEV25296.1| two component transcriptional regulator [Actinobacillus minor 202]
          Length = 225

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ D   A   D+  +++  N+ +  E        D+  ++  L   G+  L
Sbjct: 3   ILLVEDDRMIADAVSANLKDNHYAVDWVNNGKTAEEALMIQSYDLVLLDLGLP--GQDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++   IR      P++ ++    L + L   D G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  QVLSHIRQKKNSTPVLIVTARDDLDSRLSGLDGGADDYIIKPFDMAELQARMRAVLRRHG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             S+ +   G I +       E+ G+     L  +E  +L  L++  G  +++  +   I
Sbjct: 121 GQSSPKLTNGVITLDPTSYVVEIAGQNSTITLSNKEFSVLHALISRAGMILSRADLEDKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           Y  + E VE N ++  I  LRKK+    G + + + R +G+ +
Sbjct: 181 Y-AWGEEVESNAIDFLIHGLRKKI----GKEQIKNVRGVGWMM 218


>gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
          Length = 229

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  +    +    E L+ +  +D   I   L+       
Sbjct: 5   ILIVEDERNLARFVSLELQHEGYDV--VTADNGREGLEMALEKDFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R ++      ++ ++   S+   +   D G D+ + KP    E+LAR+ A +RR   
Sbjct: 63  EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATFRRQDI 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               K     +    +++    R      EV PL +RE  +L  L++N  + + + ++  
Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  +D+ +E NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226


>gi|291458739|ref|ZP_06598129.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418656|gb|EFE92375.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 247

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + ++ +   S              +  ++  +   G    
Sbjct: 21  ILVIDDDRELCTLIRRTVSQEDIAADCCYSGRAGLEKLKENEYQLVILDVMMP--GFDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E    IR  S VP++  +      + +    +G DD + KP    E+LAR+ ++ RR   
Sbjct: 79  ETLAQIRKESGVPVLMFTAKNDSSSKVRGLRNGADDYLTKPFVMEELLARIVSLIRRYTR 138

Query: 122 SNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N             + +  D R    +   F L  +E  +L +   N+G+ + K QI+ 
Sbjct: 139 FNPNGSDAKTLSYDGLMIDLDARSVTTENGTFELLPKEFDVLLHCAKNQGRILTKRQIYE 198

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N++   IS+LRKKL  +      + + + +GY  +
Sbjct: 199 EVWGEAYVYGDSNIMAV-ISRLRKKLEADPKNPKYIQTVKGVGYRFN 244


>gi|238922516|ref|YP_002936029.1| hypothetical protein EUBREC_0090 [Eubacterium rectale ATCC 33656]
 gi|238874188|gb|ACR73895.1| hypothetical protein EUBREC_0090 [Eubacterium rectale ATCC 33656]
          Length = 220

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++  +   G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSN-PLKINMEELHRYDLILLDIMMP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    ++ + +HI  +R K  +   + PV +   +GY  +
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPVKTVWGIGYKWE 219


>gi|229119146|ref|ZP_04248471.1| hypothetical protein bcere0017_53940 [Bacillus cereus Rock1-3]
 gi|228664299|gb|EEL19815.1| hypothetical protein bcere0017_53940 [Bacillus cereus Rock1-3]
          Length = 230

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  ++   + +            +  ++  L   G    
Sbjct: 15  ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLP--GMNGH 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 73  ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+   GK ++   I S ++G +
Sbjct: 133 VAKELHYGKLTLLPEDFKVFYGDEELLLTLKEFEILMLLVQKNGKTLSHEVILSRVWG-Y 191

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL +    + + + R +GY ++
Sbjct: 192 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLE 227


>gi|260599706|ref|YP_003212277.1| osmolarity response regulator [Cronobacter turicensis z3032]
 gi|261341904|ref|ZP_05969762.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
           ATCC 35316]
 gi|296105099|ref|YP_003615245.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|260218883|emb|CBA34238.1| Transcriptional regulatory protein ompR [Cronobacter turicensis
           z3032]
 gi|288315807|gb|EFC54745.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
           ATCC 35316]
 gi|295059558|gb|ADF64296.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 239

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|193077836|gb|ABO12711.2| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
          Length = 220

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D     +   +    DG  ++     ++          D   ++  L    GEKV
Sbjct: 3   ILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLTGEKV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  R+  
Sbjct: 63  LTTIRH--KQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  A+Y 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E  I +LRKK+    G   + + R LGY +
Sbjct: 180 AWGEEIESNAIEVFIYQLRKKI----GSSSIKTIRGLGYRM 216


>gi|153947217|ref|YP_001402928.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|238754106|ref|ZP_04615464.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
           29473]
 gi|238765203|ref|ZP_04626134.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
           33638]
 gi|238783102|ref|ZP_04627128.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
           43970]
 gi|152958712|gb|ABS46173.1| transcriptional regulatory protein OmpR [Yersinia
           pseudotuberculosis IP 31758]
 gi|238696586|gb|EEP89372.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
           33638]
 gi|238707602|gb|EEP99961.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
           29473]
 gi|238715898|gb|EEQ07884.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
           43970]
          Length = 239

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|329934372|ref|ZP_08284451.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305968|gb|EGG49823.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V+ G        G   E   + E      +++  D+  ++  L   G   LE
Sbjct: 5   LLIEDDPAVRRGVTLGLRRRGHETEAVATGEDGLEALAASPPDLVLLDLMLP--GMSGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  SQVP++ +S        +   ++G DD + KP     I AR+ A+ RRL  S
Sbjct: 63  VCRRIRETSQVPVVILSARGDDIDVVVGLEAGADDYIVKPSSDEVIEARMRAVMRRLAPS 122

Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + +          G    L   E ++L +L A   +  ++ Q+  
Sbjct: 123 QPGPAAGAEPTVHGDLEIDRLALRVCRSGTEVTLAPSELKLLLFLSAWPERTFSRQQLLE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++       +  +V++ + ++R K+  +      + + R  GY  
Sbjct: 183 QVW-EHSYYGDARLVDACVMRVRSKIEEDPRHPRHIQTVRGFGYRF 227


>gi|317126106|ref|YP_004100218.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590194|gb|ADU49491.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 244

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +      G  G       +    + + ++   D   I   L   G   +E
Sbjct: 16  LVVDDERDIAEMVSDYIGRAGYV--TLEAYTGPDAVSAAREFDPDVIMLDLGLPGFDGVE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR  S   ++ ++        +     G DD + KP    E+LAR+ A+ RR + +
Sbjct: 74  VCRQIRMFSDCYILMLTARADEVARVVGLSVGADDYITKPFSTNEVLARIQAVLRRPRRT 133

Query: 123 NNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G +R+   GR+  V G   PL R E  +L+ L         +  
Sbjct: 134 EPHVRPSVVEEPARVFGDLRIEVPGREVTVAGTPVPLTRTEFDLLDALSGRPKLVFTRRA 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +   ++       +E+VV+ HI  +R KL  +      +++ R +GY +
Sbjct: 194 LIDEVWDTG-WMGDEHVVDVHIGHIRGKLGDDANSAKYIETIRSVGYRM 241


>gi|291528837|emb|CBK94423.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 231

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 96/232 (41%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED--VSAIEAFLIGKGEK 59
            ++++D   V  G   L       L+ ++ +  +  +++  + D   S +   ++     
Sbjct: 4   ILVVEDDKTVYSGIKKLLE-----LQHYSVVIAQNGMEALEKIDESFSLVIMDIMMPQLD 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E  R +R    VP++ +S        L+  + G DD + KP  + E++++V A+ RR 
Sbjct: 59  GIETCRRMRERHSVPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALIRRY 118

Query: 120 KV----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           +V           +   ET  +++F++    E       L  +E  IL+ LM N  +   
Sbjct: 119 RVYDSGSANRTNKDESIETDGLKLFTNRNKVEFNDNEIKLTGKEYEILKLLMKNPDRIYT 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              I+  ++        +N V  HI  LR KL    G   + ++   GY  +
Sbjct: 179 IEMIYEMVWDEVFTYNAKNTVMVHIKNLRNKLIKACGDACIHTEWGRGYRFE 230


>gi|269140794|ref|YP_003297495.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Edwardsiella tarda
           EIB202]
 gi|267986455|gb|ACY86284.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Edwardsiella tarda
           EIB202]
 gi|304560554|gb|ADM43218.1| Copper-sensing two-component system response regulator CpxR
           [Edwardsiella tarda FL6-60]
          Length = 232

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G  +   +  E    +   A  D+  ++  +  K    +
Sbjct: 4   ILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLD-ASIDLLLLDVMMPKK--NGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R H Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  DTLKELRQHHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +  +          +   +++    ++    G+   L   E  +L  L  + G+ V++  
Sbjct: 121 NEQQQNSDSGAPILQVDRLQLNPGRQEASFDGQPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   + G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPERQDGQPWFKTLRGRGY 226


>gi|226315214|ref|YP_002775110.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098164|dbj|BAH46606.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 225

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +        G  G  ++             S + D+  ++  L       L
Sbjct: 4   ILLIEDEMPIARLVQVYLGRAGYEVKWNEGNHEAIPTFLSWKPDLVLLDLMLPDH--DGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++   IR +   P+I I+   ++   L     G DD + KP    E+LARV A+ RR   
Sbjct: 62  DILDQIRQYGSCPVIIITARGTVPDKLQGLAQGADDYIAKPFDPEEVLARVQAVLRRSSY 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +    ++  +      L  R+ ++L +L  +  +  ++ Q+   ++G
Sbjct: 122 ISEADTIRLGTLSIDVTAQNALIGKTPLALMPRDWQLLVFLARHPNQCFSRDQLLDQVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + D    +  V++ + +LRK L         + + R +GYS+
Sbjct: 182 M-DFEGGDRSVDTAVKRLRKSLLPWPTSEGEISTIRGMGYSL 222


>gi|33599368|ref|NP_886928.1| transcriptional regulatory protein [Bordetella bronchiseptica RB50]
 gi|33566964|emb|CAE30877.1| transcriptional regulatory protein [Bordetella bronchiseptica RB50]
          Length = 237

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEKV 60
           +LI+D             + G  +    S +    L+++ ++  D+  ++  L       
Sbjct: 5   LLIEDDQANARYLANGLTELGHMVTV--SGDGAGGLENAMKDQWDIIILDRMLPNN-VDG 61

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L +   +RA   + P++ +S   ++   +D   +G DD + KP    E++AR+ A+ RR 
Sbjct: 62  LSILSTLRALGKKTPVLVLSALSAVDDRVDGLRAGGDDYLVKPFSFSELVARLDALVRRT 121

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +        + V    +  +  G    L  +E R+L YLM +  + V +T +   I
Sbjct: 122 RPDPDVKELRIADLSVNVATQKVQRAGVPISLQPQEFRLLVYLMLHAHRIVTRTMLLETI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +    + NV++  +S+LR+K+        + + R  GY++
Sbjct: 182 WG-YSFDPQSNVIDVQVSRLRRKIDTASATPLIHTVRGAGYTL 223


>gi|114561278|ref|YP_748791.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332571|gb|ABI69953.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 227

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A         F      ++     +    L    + D+  ++  L       L
Sbjct: 5   ILLVEDDATTLKYVADGFTAQKYQVDSATDGQEGLTLAKHNQYDLLILDRMLP--KLDGL 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L   +R + ++ P++ +S    +   +    +G DD + KP    E+L R   + +R  
Sbjct: 63  TLLSALRTSGNKTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFAELLVRAEKLAQRNV 122

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++ +    E G +++    R   +      L  +E ++L+YLM +  + +++T +F A++
Sbjct: 123 VEPAATEIEVGSLKMELLTRKVTLDDSELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 183 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 223


>gi|120610269|ref|YP_969947.1| osmolarity response regulator [Acidovorax citrulli AAC00-1]
 gi|326316447|ref|YP_004234119.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|120588733|gb|ABM32173.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
 gi|323373283|gb|ADX45552.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 243

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +     +   RE V  I   L+  GE  L
Sbjct: 11  ILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALN--RILLRETVELIVLDLMMPGEDGL 68

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA +   P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 69  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     GP       R  +  GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 129 PQEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSRE 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 189 KLALLARGR-EFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|121607358|ref|YP_995165.1| two component transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121551998|gb|ABM56147.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 226

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D  ++ DG +      G  ++   S  E +  L ++   D+  ++  L       
Sbjct: 3   ILIVEDDQVLADGLLRTLRASGAVVDHVASGSEADAALLTNNEFDLLILDLGLPR--MHG 60

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +R     +P++ ++   S+   +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  LEVLKKLRGRGMALPVLILTAADSVDERVKGLDLGADDYMAKPFSLQELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +++    GP+     GR   + G++  L  RE  +L  L+   G+ V+K Q+   + 
Sbjct: 121 MGGTSSAIRHGPLVYDQAGRVATIDGKMIELSARELGLLGVLLQRVGRLVSKEQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 -EWSEEVSNNAIEVYIHRLRKKIE--GGPIRIATVRGLGYCLE 220


>gi|91778060|ref|YP_553268.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|187920547|ref|YP_001889579.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|296157989|ref|ZP_06840822.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307726131|ref|YP_003909344.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|91690720|gb|ABE33918.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
 gi|187718985|gb|ACD20208.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
 gi|295891757|gb|EFG71542.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307586656|gb|ADN60053.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 228

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V D   +   + G  ++     E    L +    DV  ++  L  +     
Sbjct: 3   LLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMHLATEFDYDVIVLDVMLPKR--DGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R     P+I ++    +   +     G DD + KP    E++ R+ A+ RR + 
Sbjct: 61  SVLKALRMRKSTPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTRS 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G + V   GR     G    L  +E ++L  L   +G  ++KT I   ++ +
Sbjct: 121 QESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWDV 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +     NVVE+ I +LR KL        + + R +GY ++ 
Sbjct: 181 -NFDSHTNVVETAIKRLRAKLDGPFPSKLLHTVRGMGYVLEV 221


>gi|257064074|ref|YP_003143746.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791727|gb|ACV22397.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 225

 Score =  212 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G + +          +  +   D   ++  L   G+    
Sbjct: 4   LIVEDDPNIAEYLRKSLESEGFTTDVAYDGPTGFDMALANPYDAITLDIILP--GKNGYT 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R +    P++ ++         D FD+G DD + KP     +LAR+ A+ RR  V
Sbjct: 62  VCKELRDSGVTTPILMLTAKDGEYDEADAFDTGADDFLRKPFSLVVLLARLRALVRRGGV 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  +  +   + + +  +     G    L  RE  +LE L+ N G  + K  +   ++G 
Sbjct: 122 AKGSVLKASDLMLDTRTKRVTRAGREIELTPREFALLELLLMNAGNALPKQLLLERVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           +    +ENVVE +IS LR+K+        + + R +GY ID +
Sbjct: 181 YAILADENVVEVYISYLRRKVDAPFDKKLIRTVRGVGYCIDKD 223


>gi|313672415|ref|YP_004050526.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939171|gb|ADR18363.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 231

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 100/228 (43%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D    L   +G  ++  ++          +  ++  ++  L        
Sbjct: 5   ILIIDDDYEILDMLKILLEVEGYEVDTASNGFTGLEKLKKSSYNLILLDLNLPD--IAGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L + IR +S++P++ +S   S+   +   + G DD + KP  + E++AR+ AI RR   
Sbjct: 63  QLCKAIRKNSELPILILSAKESVTDKVLCLEYGADDYITKPFQNIELIARIKAILRRCAC 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   +        +  +    +   EV     +E  I  YL+ N+GK V++ ++ 
Sbjct: 123 NYGTEEEHTSILYYKNFIIDVENMIVKRDDEVINFTPKEFEIFLYLVRNKGKIVSRDKMI 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + ++G  +       ++ HI  +R+K+  N  G   + +   +GY ++
Sbjct: 183 NELWGKDNLYKWSRSIDVHIQHIRQKIEKNSKGHLYLKTISGVGYKLE 230


>gi|333030029|ref|ZP_08458090.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332740626|gb|EGJ71108.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 229

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 106/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + D       D G S++  NS E    +   ++ D+  ++  +    G ++
Sbjct: 6   ILVVDDEEDLCDILQFNLEDAGYSVDAANSAEEALAM-DLSKYDLFLLDVMMGEISGYRL 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R  +   + P+I ++   +    +  F++G DD ++KP   RE+L R+ A+ +R  
Sbjct: 65  ASMLREQKETEKTPIIFLTAKDTENDMVAGFNAGADDYISKPFSLREVLIRIKAVLKRTN 124

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S  +     + +  + +   + GE   L +RE  IL+ L+  + +  ++ +I  
Sbjct: 125 EGGKVKSTAKLVYNTLVIDLEQKKVTIDGEDISLTKREFEILQLLLEQKDRVFSRQEILD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + +E + +  V+ +I+++RKK+ +      + ++   GY  +
Sbjct: 185 KVW-VNEEDISDRTVDVNITRIRKKIGHY--DKNLVTRLGYGYCFE 227


>gi|312889820|ref|ZP_07749366.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311297746|gb|EFQ74869.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 227

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 95/221 (42%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +         + G  +         + L      D+   +  L       +
Sbjct: 3   ILIVEDEARIALLVKRGLEEQGHIVAVAYDGMAGKKLALQHDYDLLISDIILPL--LSGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R IR A  ++P+I ++   +    ++ FD+G DD + KP   RE+L R+ A+  R  
Sbjct: 61  ELCREIRMAKPELPVILLTALGTTDDKVEGFDAGADDYLVKPFDFRELLVRIRAVMNRKN 120

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +    +   +   + + +  +     G+V  L  +E ++LEY++ +  + + + +I   
Sbjct: 121 GTGASISPVTKYADLEINNQTKSVTRSGKVIALTPKELKLLEYMVQHADRVLTRAEIAEK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           ++         N ++ +I+ LRKK+        + ++  LG
Sbjct: 181 VWNTH-FDTGTNFIDVYINYLRKKIDKDFSDKLIHTRPGLG 220


>gi|295707302|ref|YP_003600377.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294804961|gb|ADF42027.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 229

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +++G      ++G+ +  F + +  E ++   +E V  I   ++   +  
Sbjct: 5   VVLVVDDEQEIRNGIAIYLKNEGIKV--FTAKDGIEAIEILNKEKVHLIILDIMMPRQDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +     IR    +P+I +S        +     G DD V KP +  E++ARV +  RR  
Sbjct: 63  ISTTFKIREQKNIPIIMLSAKSEDADKVLGLQVGADDYVTKPFNPLELIARVKSQLRRYV 122

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      +   + +  + +   + G    L   E +I+E LM N G+  +   I+ 
Sbjct: 123 TLGTYEEKKTIDIRGLVLDIEAKSVTLDGGFIKLTPIEYKIVELLMKNAGRVFSIHDIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++       E N V  HI K+R+K+         V     LGY ++
Sbjct: 183 RVWNEPGYNAE-NTVAVHIRKIREKIEIEPKNPRYVKVVWGLGYKME 228


>gi|187777750|ref|ZP_02994223.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC
           15579]
 gi|187774678|gb|EDU38480.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC
           15579]
          Length = 217

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 94/219 (42%), Gaps = 7/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D+  +++         G  +   +  E       +   D+  ++  L         
Sbjct: 5   LVVEDQIAIRELIAINLEMAGYEVIEASDGEMAVNYIENTYFDIILLDIMLP--KLDGFS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   I     +P+I ++    +   +     G DD + KP    E+LAR+ A+ RR    
Sbjct: 63  IISKI-KGKGIPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLRRCGKI 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               +   + +F + R  + +GE+  +  +E  +L   + N+   +++ QI   ++G +D
Sbjct: 122 EEVIKLKHLDIFPEQRLIKSKGEIIDITLKEYELLMLFIKNKNIALSREQILERVWG-YD 180

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E   V+ H+ ++R+KL  K   D + +   +GY ++
Sbjct: 181 YFGETRTVDIHVLRIREKLNLK---DCIKTVYKVGYRLE 216


>gi|108763277|ref|YP_632939.1| DNA-binding response regulator PhoP1 [Myxococcus xanthus DK 1622]
 gi|45720780|emb|CAG17624.1| response regulator phoP1 [Myxococcus xanthus]
 gi|108467157|gb|ABF92342.1| DNA-binding response regulator phoP1 [Myxococcus xanthus DK 1622]
          Length = 226

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G   E  ++         +   D+  ++  L        
Sbjct: 4   ILIIEDEQDLAGLVDYNLRAAGFETETASTGASGLAKARAHPPDLVLLDLMLPDV--AGS 61

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R+++A +++    +I +S        +   + G DD V KP   RE+L RV A+ RR
Sbjct: 62  EVLRMLKADTELRKASVIIVSAKGQESDRVQGLELGADDYVVKPFSVRELLLRVKAVLRR 121

Query: 119 LKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +       +G I + +      V+GE   L   E R+L  L+    +   +  + S
Sbjct: 122 ADAEDGPSAVLASGDISLDTTRHQVRVKGEEVLLTALEFRLLRTLLERSDRVQTREVLLS 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G+  E +    V++HI +LR+KL      D +++ R +GY +
Sbjct: 182 DVWGIQAE-IHTRTVDTHIKRLREKLGPAG--DIIETVRGVGYKL 223


>gi|116253342|ref|YP_769180.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257990|emb|CAK09088.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 297

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +     AL   +G  +    +    + +    R D+  ++  L   GE  L
Sbjct: 67  ILVVDDDPEIGRLVAALLSREGFDVRTAENGMELDDVLRKVRPDLIILDLMLP--GEDGL 124

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + R +R+    P++ ++        +   + G DD V+KP   RE+LARV A+ RR   
Sbjct: 125 SICRRMRSEGAFPILMLTAKNDEMDRVVGLEVGADDYVSKPFGPRELLARVRALLRRTQS 184

Query: 120 ---KVSNNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + ++ R       +  D R      G    L   E  +L   +    + +++ QI  
Sbjct: 185 QPFQAASRRYSFDRFVIDLDARQLTDEDGAPATLTSAEFDLLTCFVLRPRRVLSRDQILD 244

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             +G   + ++   V+  +S+LRKKL +   G   + + R  GY +
Sbjct: 245 WTHGRTADPLD-RTVDILVSRLRKKLESLSPGNTLISTVRNGGYLL 289


>gi|319406454|emb|CBI80094.1| transcriptional regulator BatR [Bartonella sp. 1-1C]
          Length = 240

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +  +       +
Sbjct: 11  IVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTIHPPHLAIFDIKMPR--MDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 69  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRSNA 128

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N               G + +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLPIGTTPASSLKRGDLVMDQERHICTWKNKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A+Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAVYN-DQIYVDDRTIDSHIKRLRKKFKQVDNDFAMIETLYGVGYRF 237


>gi|255525004|ref|ZP_05391950.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511260|gb|EET87554.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 232

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++  +  F  +G ++E   +   +E L+    +  S I   ++       
Sbjct: 8   ILIVDDDRDIREMLVNYFSKEGYAVE--QACNGDEGLKVLKAKSFSLILLDVMMPKMDGY 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R  S +P+I ++        +  F +G DD + KP    E+  RV AI +R K 
Sbjct: 66  TMLCKLRESSNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKRTKS 125

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +NN  +       I + +     +       L  +E  IL  L  N+G+  +   ++  +
Sbjct: 126 NNNPCQDIIKIKDIEINTSEYTVKKDNLEIILTPKEYEILYTLAINKGRVYSTKMLYELL 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +        +N V  HI  LR+KL + +     + +   +GY I+ +
Sbjct: 186 W-KDTFMQNDNTVTMHIKNLREKLGDSVKQGKYIKTIWGVGYKIEKD 231


>gi|160903356|ref|YP_001568937.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160361000|gb|ABX32614.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 232

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   ++D        + + +    +L +    L   +  D+  ++  L   G  V 
Sbjct: 5   LIVEDDEDIRDILKTYLRLEDLQIFEAGTLSQMRNVLNKESNIDIILLDLMLPD-GNAVD 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ELP++   + ++ +I IS   +    +   +SG DD + KP + RE+ ARV A+ +RLK 
Sbjct: 64  ELPKVRALNREIGIIIISAKNTDGEKILGIESGADDYITKPFNPREVTARVRALLKRLKK 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S ++   GP+ ++S+      +G+   L  +E  IL+ L  N  K   + +I   I+   
Sbjct: 124 SESKMIFGPMEIYSNNYLVTYKGKNIELTSKEFEILDLLARNSEKVYTREEIIDKIW-FG 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           DE + + V++ HIS +R K+    G + + + R +GY  + N
Sbjct: 183 DEFITDRVIDVHISMIRSKI----GKEWIKTIRNVGYKFNKN 220


>gi|119715846|ref|YP_922811.1| two component transcriptional regulator [Nocardioides sp. JS614]
 gi|119536507|gb|ABL81124.1| two component transcriptional regulator, winged helix family
           [Nocardioides sp. JS614]
          Length = 232

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 88/221 (39%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++   +    EW  S    D   ++  L   G    
Sbjct: 3   ILVVEDDKQLAAALRRGLESEGHAVDVALTGTDGEWYASENTYDAMVVDVMLP--GLTGD 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L    R      P++ ++     +      D+G DD ++KP     + AR+ A+ RR  
Sbjct: 61  ALCARRRESGDWTPILMLTARSGPEQEARALDAGADDFLSKPFSFMVLTARLRALLRRDS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G +R+               L  ++  +LE++M +    ++K+ I   ++ 
Sbjct: 121 RERPTVLEVGDLRLDPALHRVWRGDTSIDLTPKQFSLLEFMMRHADHILSKSMILEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F      N+VE ++ +LR+++        + + R +GY +
Sbjct: 181 -FSYDGHPNIVEVYVRQLRQRIDEPFQRSSLQTVRLVGYRV 220


>gi|318042450|ref|ZP_07974406.1| OmpR subfamily protein [Synechococcus sp. CB0101]
          Length = 240

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEK 59
            +L++D   + +  +AL    G  ++  +       L     AR D++ ++  L      
Sbjct: 5   ILLVEDEPDLAEALVALLEQQGHVVDHCSDGLSAWTLLSGDLARYDLALVDWMLPQ--LS 62

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +EL R +RA    VP++ ++        ++  D+G DD ++KP    E+LARV A+ RR
Sbjct: 63  GVELCRRLRAAGFTVPVLLLTARDGTADRVEGLDAGADDYLSKPFAMEELLARVRALQRR 122

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQI 173
                  + + G  R+     +  VQ        PL  +E ++L Y M + G  ++ +++
Sbjct: 123 HPGYREPQLQVGSYRLDPSRSELTVQAATGAVRVPLSAKELQLLTYFMEHSGDILSGSRL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++ L  + V  NVV + +  LR+KL +     P+ +    GY  D
Sbjct: 183 RNQLWDLHQDPV-SNVVAAQVRLLRRKLADHGLPSPITTVPSRGYRFD 229


>gi|290352215|dbj|BAI78818.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+R   +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRLQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|254419224|ref|ZP_05032948.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196185401|gb|EDX80377.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 234

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +           G  +  ++          SA  D+  ++  +       +
Sbjct: 4   ITLVDDDENIVASVSLALESHGHKITAYHDGASGLAALESAPPDLVILDVKMPR--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  SQ+P+I ++        +  F+ G DD ++KP   R ++ RV A+ RR   
Sbjct: 62  EVLRRLRQTSQIPVIMLTSKDEEIDEILGFNLGADDYIHKPFSQRLLIERVKALLRRTGA 121

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +VS    + G + +     +    G+   L   E  +L+ L    G   ++
Sbjct: 122 DGVDPEPSAEVSGKAIKRGKLSMDPARHESTWDGKPVKLTVTEFLLLQALAQRPGFVKSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             +  A Y      V++  ++SH+ ++RKK R     FD +++   +GY 
Sbjct: 182 DNLMDAAYD-DQVYVDDRTIDSHVKRMRKKFRAVDNEFDAIETLYGVGYR 230


>gi|118471523|ref|YP_887235.1| DNA-binding response regulator, PhoP family protein [Mycobacterium
           smegmatis str. MC2 155]
 gi|118172810|gb|ABK73706.1| DNA-binding response regulator, PhoP family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 255

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  ++  +          +   D+  ++  L       L 
Sbjct: 33  LLVDDERALTNLVQMALQYEGWVIDVAHDAAQAVEKYRANLPDLLVLDIMLPDT--DGLG 90

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +   IR+     P + ++   S+   ++   +G DD + KP    E++AR+  + RR   
Sbjct: 91  VLEQIRSFGTYTPTLFLTARDSVADRVEGLTAGGDDYMTKPFSLEELVARLRGLLRRTAY 150

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               ++     G + + +             L   E ++L  LM +  K +++  I   +
Sbjct: 151 LTPAADETLRVGDLTLDASSHTVTRGDTPIALTSTEFQLLRVLMRHPRKALSRDDILRQV 210

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D     ++V+ ++S LRKK+        + + R +GY +
Sbjct: 211 W-EYDFGGRTSIVDLYVSYLRKKIDTGREP-MIHTVRGVGYML 251


>gi|117618227|ref|YP_854835.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559634|gb|ABK36582.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 239

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++        + G  + G  + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLP--GEDGLS 65

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R A +Q+P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  V
Sbjct: 66  ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 125

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +      G  ++    R+    G+   L   E  +L+ L+++  + +++ ++
Sbjct: 126 ELPGAPSTAEKVVSFGSYQLNLATRELSRDGDPVALTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +   G  +    E  ++  +S+LR+ L         + +   LGY  
Sbjct: 186 MNLARGR-EYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVF 232


>gi|33860688|ref|NP_892249.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633630|emb|CAE18587.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 251

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 87/231 (37%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++         G  ++        + L      D+  ++  L       L
Sbjct: 5   ILLIEDDRDMRELVSGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR
Sbjct: 63  TLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELYVRIKALLRR 122

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +             GP+ +  +  +         L   E  +L  LM   G+ V+  
Sbjct: 123 TNRAQLNSTNQQEILNYGPLTLVPERFEAIWFESAVRLTHLEFELLHCLMQRHGQTVSPA 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I   ++G ++   +   +  H+  LR KL         + +    GY ++
Sbjct: 183 LILKEVWG-YEPDDDIETIRVHVRHLRTKLEPEPRKPKYIKTVYGAGYCLE 232


>gi|322373046|ref|ZP_08047582.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus sp.
           C150]
 gi|321278088|gb|EFX55157.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus sp.
           C150]
          Length = 219

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 101/219 (46%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD+  +    +         + GF S+  +    S  R D+  ++  +       L
Sbjct: 4   ILVIDDQEDIVKLVVKALELKNHKVTGFTSV-LDLDKNSLPRFDLIILDIMMPDV--DGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +    IR     P++ I+        +     G DD + KP   +E+ ARVAA  RR  +
Sbjct: 61  QFCHEIRDQVDCPILFITARTQEGDIVQGLSYGADDYICKPFGVKELQARVAAHLRRESR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +++   G  +     ++  V+ ++  L + E  I ++L  N+G+  +K QI++ +YG 
Sbjct: 121 ERHHKLSLGDFQFDLSAQELYVENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++      V  HI  +R KL++ +G +P+++   +GY 
Sbjct: 180 YEDKGSPTAVAEHIKNIRAKLKD-VGQNPIETVWGIGYK 217


>gi|302870950|ref|YP_003839586.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573809|gb|ADL41600.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 217

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++         +G  +E  +           +   V  ++  L  K     
Sbjct: 3   ILLIEDEEKLRKIMKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +  F+ G DD V KP+  +EI+ARV AI +R K 
Sbjct: 61  SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTKK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++      + +    R+  V+G+   L ++E  +L YL   +   +++ QI ++++G +
Sbjct: 121 PSSN---DILFIDKAAREVYVKGQKLNLTQKEYELLLYLYERQNIALSREQILNSVWG-Y 176

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +   V++HI  LR+KL      D + + R  GY  + 
Sbjct: 177 EYYGDLRTVDTHIKNLREKLGEL--RDCIKTVRGYGYKFEV 215


>gi|255525477|ref|ZP_05392414.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188589|ref|ZP_06856977.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
 gi|255510842|gb|EET87145.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296046853|gb|EFG86299.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
          Length = 227

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         +D   +   ++ +E  E  ++    D+  ++  +   G+  
Sbjct: 5   ILIVDDEEDIISFLKDSLQEDDYEVFVAYSGIEAVE--KAKLNPDLILLDVMMP--GKNG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R IR     P+I ++     +  +     G DD ++KP   R++ AR++A  RR +
Sbjct: 61  YEVCREIRDIVNCPIIFLTAKSEEEDLITGLGVGGDDYISKPFSLRQLKARISAHLRRDQ 120

Query: 121 VSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S N           + +   GR     GEV PL ++E  ++E L  N G+  +K QI+ 
Sbjct: 121 RSFNNENRVNLYFENLNIDLKGRTIFCMGEVIPLTKKEFGVIELLAVNCGQVFSKEQIYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
            I+G +D   +   V  HI K+R KL+      + + +   +GY  +
Sbjct: 181 KIWG-YDAEGDSATVAEHIKKIRYKLKKYDKDREYISTVWGVGYKWE 226


>gi|134096087|ref|YP_001101162.1| two-component system regulatory protein [Herminiimonas
           arsenicoxydans]
 gi|133739990|emb|CAL63041.1| putative Two-component system regulatory protein [Herminiimonas
           arsenicoxydans]
          Length = 229

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +     A     G  L+   +      L +    D   ++  L   G   L
Sbjct: 3   ILIIEDNADIVANLYAFLEPRGYVLDCAANGYAGFALAAQHEYDAVILDIKLP--GIDGL 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L R +R    +  P++ ++   +L   +  FDSG DD + KP    E+  R+ A+ RR 
Sbjct: 61  TLCRKMRDELQNDTPVLMLTARDTLDDKVAGFDSGADDYLVKPFSLLEVEVRLKALIRRA 120

Query: 120 KVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  N   N    G +   +     +  G    L +   +IL  LM    K V++  +   
Sbjct: 121 RGKNQGTNFLSVGDLIFDTSTYQVKRDGVPIALTKTGFKILSCLMKEAPKVVSRETLELE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D   + + + +HI  LR+ L     F  + + + +GY +
Sbjct: 181 VWG--DHPPDSDALRTHIHALRQALDKSHPFAMLRTVQGIGYRL 222


>gi|22127786|ref|NP_671209.1| osmolarity response regulator [Yersinia pestis KIM 10]
 gi|45439999|ref|NP_991538.1| osmolarity response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51598054|ref|YP_072245.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108809324|ref|YP_653240.1| osmolarity response regulator [Yersinia pestis Antiqua]
 gi|108814089|ref|YP_649856.1| osmolarity response regulator [Yersinia pestis Nepal516]
 gi|145597386|ref|YP_001161461.1| osmolarity response regulator [Yersinia pestis Pestoides F]
 gi|150260818|ref|ZP_01917546.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
 gi|162420395|ref|YP_001608057.1| osmolarity response regulator [Yersinia pestis Angola]
 gi|165928014|ref|ZP_02223846.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936270|ref|ZP_02224839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010577|ref|ZP_02231475.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213187|ref|ZP_02239222.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398927|ref|ZP_02304451.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418957|ref|ZP_02310710.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425688|ref|ZP_02317441.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170022433|ref|YP_001718938.1| osmolarity response regulator [Yersinia pseudotuberculosis YPIII]
 gi|186897254|ref|YP_001874366.1| osmolarity response regulator [Yersinia pseudotuberculosis PB1/+]
 gi|218927347|ref|YP_002345222.1| osmolarity response regulator [Yersinia pestis CO92]
 gi|229836383|ref|ZP_04456550.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Pestoides A]
 gi|229839992|ref|ZP_04460151.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842073|ref|ZP_04462228.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904626|ref|ZP_04519737.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Nepal516]
 gi|270488161|ref|ZP_06205235.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
 gi|294502226|ref|YP_003566288.1| osmolarity response regulator [Yersinia pestis Z176003]
 gi|21960915|gb|AAM87460.1|AE013996_5 response regulator (sensor, EnvZ) [Yersinia pestis KIM 10]
 gi|45434854|gb|AAS60415.1| transcriptional regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51591336|emb|CAH23002.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108777737|gb|ABG20256.1| transcriptional regulatory protein [Yersinia pestis Nepal516]
 gi|108781237|gb|ABG15295.1| transcriptional regulatory protein [Yersinia pestis Antiqua]
 gi|115345958|emb|CAL18822.1| transcriptional regulatory protein [Yersinia pestis CO92]
 gi|145209082|gb|ABP38489.1| transcriptional regulatory protein [Yersinia pestis Pestoides F]
 gi|149290226|gb|EDM40303.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
 gi|162353210|gb|ABX87158.1| transcriptional regulatory protein OmpR [Yersinia pestis Angola]
 gi|165915884|gb|EDR34492.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919963|gb|EDR37264.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990667|gb|EDR42968.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205485|gb|EDR49965.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962951|gb|EDR58972.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051431|gb|EDR62839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055378|gb|EDR65172.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169748967|gb|ACA66485.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186700280|gb|ACC90909.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229678744|gb|EEO74849.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Nepal516]
 gi|229690383|gb|EEO82437.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696358|gb|EEO86405.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706451|gb|EEO92458.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Pestoides A]
 gi|262360305|gb|ACY57026.1| osmolarity response regulator [Yersinia pestis D106004]
 gi|262364256|gb|ACY60813.1| osmolarity response regulator [Yersinia pestis D182038]
 gi|270336665|gb|EFA47442.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
 gi|294352685|gb|ADE63026.1| osmolarity response regulator [Yersinia pestis Z176003]
 gi|320013272|gb|ADV96843.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 239

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|317047742|ref|YP_004115390.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316949359|gb|ADU68834.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 222

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ ++  L   GE  + 
Sbjct: 4   LVVEDNALLRHHLAVQLREMGHQVDAAEDAKEADYFLQEHVPDIALVDLGLP--GEDGMS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R  + + P++ ++     Q  ++  ++G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  LIRRWRGDAIRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++      P +V    R+  +  E   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 HASQIISMSPFQVDLSRRELTINEEQVKLTAFEYTIVETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK+      + +++ R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKILALYPTEVINTVRGQGYRFD 221


>gi|197105292|ref|YP_002130669.1| response regulator [Phenylobacterium zucineum HLK1]
 gi|196478712|gb|ACG78240.1| response regulator [Phenylobacterium zucineum HLK1]
          Length = 251

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++  +       +S       E      +    D+  ++  +       LE
Sbjct: 24  LVVDDDPHIRELLVFALEKARLSARVAEDGEAALAAVAEQAPDLVILDINMPR--LDGLE 81

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA   +P++ +S        +   + G DD V KP   RE+ ARV AI RR++  
Sbjct: 82  VCRRLRAQGDLPILFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVTARVQAILRRVRGR 141

Query: 123 NN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +  +           PL   E +IL  LM    +  ++  I   +
Sbjct: 142 AEPRGPGVLRHGRLSLDPEAWTARWDEVEAPLTVTEFQILRVLMGAPARVFSRDAIIDRL 201

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G    A+ +  ++SHI  LR K     G D V+++  +GY +
Sbjct: 202 HGPG-FAITDRTIDSHIRNLRAKFARAGGHDVVETRAGVGYRL 243


>gi|85060297|ref|YP_455999.1| osmolarity response regulator [Sodalis glossinidius str.
           'morsitans']
 gi|304397823|ref|ZP_07379699.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308188419|ref|YP_003932550.1| Two-component response regulator ompR [Pantoea vagans C9-1]
 gi|84780817|dbj|BAE75594.1| two-component regulatory protein [Sodalis glossinidius str.
           'morsitans']
 gi|304354534|gb|EFM18905.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308058929|gb|ADO11101.1| Two-component response regulator ompR [Pantoea vagans C9-1]
          Length = 239

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|17231280|ref|NP_487828.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132922|dbj|BAB75487.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 238

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++  I  F      +E     +    L       +  ++  L        
Sbjct: 11  ILVVDDDFGVRN-LIYRFLSRKYQIESAADGKTALSLFEQFNPALVILDWNLPDT--SGY 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L + +++ + V ++ ++        +    +G DD + KP    EI  RV A+ RR++ 
Sbjct: 68  SLCQEMQSRNNVLVMILTGRTEEADKIRILAAGADDFITKPFSLAEIEVRVQALLRRIRS 127

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                + R     + +  +GR+  +  +   L   E  IL +L ++ G+  ++ Q+   I
Sbjct: 128 IKPSPSQRLIFKQLAINPEGREVTLNDKPLNLTALEFNILHFLASHPGQAWSRPQLIQKI 187

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
           +G  D   +  VV+ HI +LRKKL +     + + + R  GY  +
Sbjct: 188 WGC-DYVGDGRVVDVHIGQLRKKLESDTSIPEFIKTVRGYGYKFE 231


>gi|107027098|ref|YP_624609.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116691509|ref|YP_837042.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|105896472|gb|ABF79636.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116649509|gb|ABK10149.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
          Length = 223

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLTEASYTVDVTENGQDGLFLALHEDFDLIVLDVMLPA--LDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ R +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR  +
Sbjct: 61  EVLRRLRAQKQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + +    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220


>gi|254228323|ref|ZP_04921750.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262394388|ref|YP_003286242.1| DNA-binding response regulator [Vibrio sp. Ex25]
 gi|151939129|gb|EDN57960.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262337982|gb|ACY51777.1| DNA-binding response regulator [Vibrio sp. Ex25]
          Length = 218

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+    +      G +++             +       ++  L       L
Sbjct: 3   LLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGYGVTSALKTEAFTAVILDLTLPD--IDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R IR    ++P++ ++    ++  +   D G DD + KP    E+LAR+  + RR  
Sbjct: 61  EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G + +    +          L R E +IL  LM N G+  +K Q+  +++G
Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLHG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +DE   +N +E HI  LRKK         + + R +GY ++
Sbjct: 181 -WDEGSSDNAIEVHIHNLRKK----APKVVIKNIRGVGYILE 217


>gi|262165813|ref|ZP_06033550.1| two-component system response regulator QseB [Vibrio mimicus VM223]
 gi|262025529|gb|EEY44197.1| two-component system response regulator QseB [Vibrio mimicus VM223]
          Length = 219

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  ++     G   E         +  ++   DV  ++  L       L
Sbjct: 3   ILVVEDDVQLGNQILSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       +G+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N +E  I ++RKK+      D + + R LGY +  N
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKI----APDVIKTVRGLGYQLHAN 219


>gi|145593184|ref|YP_001157481.1| two component transcriptional regulator [Salinispora tropica
           CNB-440]
 gi|145302521|gb|ABP53103.1| two component transcriptional regulator, winged helix family
           [Salinispora tropica CNB-440]
          Length = 240

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +     +    DG  +                  DV  ++  L   G   +E
Sbjct: 16  LVVDDEQSLAKVVASYLERDGYQVRCVFDGPAALDAAREDEPDVVVLDLMLP--GLDGVE 73

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S   +I ++        L     G DD + KP   RE++ARVAA+ RR +  
Sbjct: 74  VCRRLRAFSDCYVIMLTARTEETDKLTGLGVGADDYLTKPFSPRELVARVAAMRRRPRQP 133

Query: 123 NNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             R        GP+ V    R+  +     PL R E  +L  L       +++ Q+ +A+
Sbjct: 134 RIRPEPALRRFGPLEVDVPAREARLDEVPVPLTRTEFDLLAVLSGRPNVALSRAQLITAV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +G      +E +V+ HI  LR+KL +       + + R +GY +
Sbjct: 194 WG-DGWVGDERLVDVHIGHLRRKLGDGPARPRFILTVRGIGYRM 236


>gi|24214711|ref|NP_712192.1| response regulator containing a signal receiver domain and a
           DNA/RNA polymerase-binding domain [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45657759|ref|YP_001845.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24195704|gb|AAN49210.1| response regulator containing a signal receiver domain and a
           DNA/RNA polymerase-binding domain [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45600999|gb|AAS70482.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 240

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   ++D    +   +G  +    + + E         D+  ++  L        
Sbjct: 22  ILLTEDEPGIRDTIQIVLESEGFKMIYAMTGK-ECISLLKESPDLLVLDVGLPD--GSGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  + +P+I ++   S    +   + G DD + KP   RE++AR+ A+ RR   
Sbjct: 79  EILKELRKKNSIPVILLTARESELDRVLGLELGADDYMVKPFSPRELVARIKAVLRRYDG 138

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++ + +T  +    D +     G+   L   E + L   +   GK   + +I   ++   
Sbjct: 139 NSEKKQTEFLT-DEDRKIIYYYGKSLSLTPYEYKTLLLFLKRPGKIFTREEIMDRVWTEP 197

Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           +E+ +   V++ I  +R +L+      DP+++KR  GY +
Sbjct: 198 EESFD-RAVDTVIKNIRFRLKEIRPDLDPIETKRGQGYGL 236


>gi|330818201|ref|YP_004361906.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370594|gb|AEA61950.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 247

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLP--KMPGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA + V P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVLRRLRARNSVLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVIRHGSLSFDQVGRLAYANERVLDLSARELGLLEVLLQRVGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRILTVRGLGYCLE 219


>gi|254787133|ref|YP_003074562.1| RstA family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237685183|gb|ACR12447.1| transcriptional regulatory protein RstA [Teredinibacter turnerae
           T7901]
          Length = 229

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L +D   + +         G  +              S   D+  ++  L   G+  
Sbjct: 3   LVLLAEDDRRLAELVKDYLESHGFQVVVEEVGHTVPRAVQSLDPDIVILDVMLP--GKDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + + IR     P++ ++   S    +   + G DD V KP   R +LAR+ A+ RR +
Sbjct: 61  LTICKEIRPRYNGPILMLTARDSDADQVSGLEYGADDYVIKPAEPRVLLARIRALLRRYQ 120

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +    G + +F   R+ ++ GE+  L   E  +L       GK +++  +F+ 
Sbjct: 121 QGEDKEQSELHFGDLSIFVSSREVKLGGEIISLSSHEFDMLVTFAKQPGKVLSREYLFNV 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218
           IYG       +  ++  IS+LRKKL +     + + +    GY
Sbjct: 181 IYGRP-YDGMDRTIDVRISQLRKKLGDHSDDPNRIKTVWGRGY 222


>gi|237715036|ref|ZP_04545517.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262409016|ref|ZP_06085561.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294645619|ref|ZP_06723312.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294809922|ref|ZP_06768596.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444869|gb|EEO50660.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262353227|gb|EEZ02322.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292639064|gb|EFF57389.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294442768|gb|EFG11561.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087844|emb|CBK69367.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bacteroides
           xylanisolvens XB1A]
          Length = 229

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 106/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + +       ++G  ++  NS E E      +   +  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAE-EAMKMDISSYHLILLDVMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
             + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR  
Sbjct: 65  ANILKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTV 124

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +  R     + +    +   +  E  PL ++E  IL  L+ N+G+  ++  I +
Sbjct: 125 TTETERAPERLTYQSLVIDITKKKVSIDDEEVPLTKKEFEILLLLVQNKGRVFSREDILA 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+   +  V +  ++ +I++LRKK+   +    + ++   GY  +
Sbjct: 185 RIW-SDEVYVLDRTIDVNITRLRKKIG--IYGKRIVTRLGYGYCFE 227


>gi|160878354|ref|YP_001557322.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427020|gb|ABX40583.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 226

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 106/222 (47%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        DG +++     +    L S+   D+  ++  L   G   +
Sbjct: 3   ILIVEDEIDLCDTIAEGLQIDGYAVDTCYHGDVAYELISTETYDLVVLDLNLP--GMDGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R  +  + ++ +S   S+   +   D G +D + KP    E+ AR+ ++ RR  
Sbjct: 61  DILSDLRKTNKDMKILILSARSSVSDKVLGLDIGANDYLAKPFAFEELEARIRSLLRRSF 120

Query: 121 VSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V  N       I + + GR   V G    + ++E  +LEY + N+ K +++ ++   ++ 
Sbjct: 121 VQENSVLVWNEISLDTVGRTVSVSGIDVTMTKKELALLEYFLLNQSKVISQEELMEHVWN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++   N V  HI+ LRKKL+  LG+DP+ +K   GY ++
Sbjct: 181 MEADSF-SNAVRVHIASLRKKLKIALGYDPIATKIGEGYFLN 221


>gi|323494129|ref|ZP_08099245.1| OmpR family two-component response regulator [Vibrio brasiliensis
           LMG 20546]
 gi|323311756|gb|EGA64904.1| OmpR family two-component response regulator [Vibrio brasiliensis
           LMG 20546]
          Length = 224

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +    I  F     ++   ++         +   DV  ++  L  K     
Sbjct: 3   ILLIEDDAHIARFLINGFQQQACTITHADNGVDGLHEAVTQAYDVIVLDIMLPEK--DGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E+   +R      P+I +S   S++  +    SG DD + KP    E+ AR  ++ RR  
Sbjct: 61  EVLAQLRGEGHTTPVIILSAKHSVEERVLGLQSGADDYLVKPFAFPELFARCQSLARRGK 120

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +  ++      + +       +  G+   L +RE  +++ +M +    + KT I   +
Sbjct: 121 QNQAQSHTLSYSELSLDLFKHTLQRAGKTLHLNQREFMLIKLMMEHPESVITKTAILEQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G      + NVV+  + +LR K+        + + R +GY +
Sbjct: 181 WG-HQFDPQTNVVDVLVCRLRGKVDKGFDTPLIHTLRGVGYVL 222


>gi|307728697|ref|YP_003905921.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307583232|gb|ADN56630.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 224

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 9/211 (4%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AH 70
            DG  A     G  ++        E    S     + ++  L  K    +E+   IR A 
Sbjct: 13  GDGIRAGLRQAGFQVDWVRDGNAAEAELRSDVYAAAVLDLGLPRK--DGIEVLSSIRRAG 70

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETG 129
             +P++ ++   ++   +   D G DD V KP+  +E+ AR+ A+ RR   VS       
Sbjct: 71  ITLPVLVLTARDTVPDRVRGLDIGADDYVVKPVDLQELAARLRALVRRAHGVSQETLRVQ 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +    R      E   L  RE  +L+ LM N G+ +++ Q+  AIYG + + +E N 
Sbjct: 131 NVALEPATRSVYRNEEPVTLSSREFDLLQTLMLNAGRVLSREQLEQAIYG-WGQEIESNA 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           VE HI +LR KL    G D + + R +GY +
Sbjct: 190 VEVHIHRLRTKL----GSDLIKTVRGVGYVL 216


>gi|296120277|ref|YP_003628055.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296012617|gb|ADG65856.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 235

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D+  +      +  D+G +++     E           DV  ++  L        +
Sbjct: 4   LIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPR--LSGFD 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           L + +R     P++ ++    +   +   D G DD + KP    E+LAR+ A+ RR    
Sbjct: 62  LLKQLRTKKSTPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAAGE 121

Query: 122 SNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S +  E G  + +    R          L  RE  I EYL  +RG+ V +T ++  I+  
Sbjct: 122 SESLLELGQGVTINLIHRKVFRDDVEIVLTAREYSIFEYLALHRGRVVPRTDLYDHIFDE 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE++  N+++ HIS LR+KL    G D ++++R LGY I
Sbjct: 182 NDESL-SNLLDVHISNLRRKL----GRDVIETRRGLGYII 216


>gi|291087886|ref|ZP_06572149.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291073605|gb|EFE10969.1| regulatory protein VanR [Clostridium sp. M62/1]
          Length = 251

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 91/237 (38%), Gaps = 21/237 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++ G        G  +  F + +  E L+   +E++      ++      +
Sbjct: 16  ILIVEDDREIRQGIEIFLRGQGYRV--FQAADGIEGLRVIEKEEIHLAIVDIMMPRMDGI 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R     P+I +S        +   + G DD V KP    E+LARV +  RR + 
Sbjct: 74  TMVIKLREQYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRR 133

Query: 121 ---------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                             N    G + +  D  +  V G    +   E +IL  LM N G
Sbjct: 134 FMKLLEEKEAGGQEEQDKNVYRIGGLELNEDTVELFVDGSPVKVTPMEFKILLLLMKNPG 193

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              +  +I+  ++   + AV  + V  H+  +R+K+  N      +     +GY I+
Sbjct: 194 HVFSAEEIYERVWN--ERAVNIDTVMVHVRNIREKIEINPRNPKYLKVVWGVGYKIE 248


>gi|254483612|ref|ZP_05096835.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036121|gb|EEB76805.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 222

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +   A    +  +++   S E       +   D+  ++  L       +
Sbjct: 7   ILLVEDDVQLGESLEAALRLEHYAVDWLRSGEPVRATIGATPYDLMILDLGLPEVP--GI 64

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ R  RA    +P++ ++   +L   +D  DSG DD + KP    E+ ARV  + RR  
Sbjct: 65  QVLRQTRADKHDIPVLLLTARNTLDDKVDGLDSGADDYLTKPFEIDELFARVRTLLRRRG 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  + + E   I +    R    +GE+  L  RE  ILE L+ N G+ V++ ++   IY 
Sbjct: 125 EGRSQQLEARGITIDPVDRLVIFEGEMLDLTAREYAILEILIRNAGRFVSRPRLEEGIY- 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E V  N VE +IS+LRK+     G D +++ R +GY I
Sbjct: 184 SWGEEVGSNTVEVYISRLRKR----FGSDCIETMRGVGYRI 220


>gi|228917667|ref|ZP_04081208.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228923764|ref|ZP_04087042.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228930063|ref|ZP_04093073.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228936917|ref|ZP_04099666.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228942200|ref|ZP_04104740.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228948764|ref|ZP_04111041.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228955296|ref|ZP_04117304.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228961275|ref|ZP_04122894.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228975129|ref|ZP_04135688.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981768|ref|ZP_04142063.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228988285|ref|ZP_04148380.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229049720|ref|ZP_04194277.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|229072518|ref|ZP_04205720.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|229082277|ref|ZP_04214740.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|229112476|ref|ZP_04242013.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|229124573|ref|ZP_04253758.1| Two-component response regulator vanRB [Bacillus cereus 95/8201]
 gi|229130288|ref|ZP_04259247.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4]
 gi|229142354|ref|ZP_04270873.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26]
 gi|229147580|ref|ZP_04275925.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24]
 gi|229153223|ref|ZP_04281402.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|229158637|ref|ZP_04286695.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342]
 gi|229181325|ref|ZP_04308655.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|229187280|ref|ZP_04314425.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1]
 gi|229193313|ref|ZP_04320263.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|229199181|ref|ZP_04325862.1| Two-component response regulator vanRB [Bacillus cereus m1293]
 gi|228584287|gb|EEK42424.1| Two-component response regulator vanRB [Bacillus cereus m1293]
 gi|228590114|gb|EEK47983.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228596290|gb|EEK53965.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1]
 gi|228602218|gb|EEK59709.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|228624621|gb|EEK81390.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342]
 gi|228630322|gb|EEK86972.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|228635870|gb|EEK92355.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24]
 gi|228641124|gb|EEK97436.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26]
 gi|228653221|gb|EEL09100.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4]
 gi|228658913|gb|EEL14568.1| Two-component response regulator vanRB [Bacillus cereus 95/8201]
 gi|228670856|gb|EEL26163.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|228700709|gb|EEL53232.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228710494|gb|EEL62467.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|228722633|gb|EEL74021.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|228771457|gb|EEM19928.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228777880|gb|EEM26152.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228784650|gb|EEM32670.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228798396|gb|EEM45390.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804429|gb|EEM51040.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228810896|gb|EEM57240.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228817534|gb|EEM63619.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228822746|gb|EEM68629.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829562|gb|EEM75189.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228835893|gb|EEM81256.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228841904|gb|EEM87010.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 216

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 100/221 (45%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPD--IDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LK 120
           +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR      
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++G 
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 215


>gi|226308004|ref|YP_002767964.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226187121|dbj|BAH35225.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 228

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 14/223 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   A    +G  +E   + +    +    + D   +   ++  G   LE
Sbjct: 7   LVVDDEVSICESIAARLRAEGYDVE--LAFDGPSAVTRCEQMDADLVVLDVMMPGFDGLE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R I+A   VP++ ++        L     G DD ++KP   R ++ARV A+ RR   +
Sbjct: 65  VCRRIQAVRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVQALLRRADRA 124

Query: 123 NNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +         E G + +    R      +   L R E  ++ YL       + +  +  
Sbjct: 125 EHAARPVADLLEFGDVVIDLTERRVRRDTQEVHLTRTEFDLIAYLAERPRAAIPRESLLE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            I+G + E      V+SH+  LR+KL    G   + +   +GY
Sbjct: 185 EIWG-WGEGAGSRTVDSHVKALRRKL----GPSVIRTVHGVGY 222


>gi|224541447|ref|ZP_03681986.1| hypothetical protein CATMIT_00609 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525639|gb|EEF94744.1| hypothetical protein CATMIT_00609 [Catenibacterium mitsuokai DSM
           15897]
          Length = 238

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + D        +G  +E          L+   +  +  +   ++  G   +
Sbjct: 13  ILVIDDEKEICDLIEIYLSQEGYHVE--KRYNAYTLLRDLEKFKIDLVILDMMMPGVDGI 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +   +IR    +P+I +S   + Q  ++    G DD + KP +  E++ARV +  RR + 
Sbjct: 71  QALEMIREKYNIPVIFVSAKTADQDKIEGLLKGADDYIAKPFNAMELVARVKSQLRRYQV 130

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 V N+  +   + + ++ +   V      + + E  IL  L ++ G   +   I+
Sbjct: 131 YSKPIGVDNSIIQANDLLIDTNKKMVSVDNRPVAVTKIEYEILVLLASHPGTVFSTEDIY 190

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + I+   +     N +  HI KLR+K+ R       + +   +GY  +
Sbjct: 191 TKIW-HEEATHANNTIMVHIRKLREKIERQPRTPRHIITVWGIGYKFE 237


>gi|254285882|ref|ZP_04960844.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226]
 gi|150424064|gb|EDN16003.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226]
          Length = 228

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      S    D+  ++  +       +
Sbjct: 4   ILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVSD-EIDLILLDVMMP--KLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + +R     P++ ++        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 61  ETLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQN 120

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +++  E   I+V+   ++   QG++  L   E  +L + + + G  + K  +   
Sbjct: 121 GLAPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           + G    A +   ++ H+S LRKKL     G   + + R  GY
Sbjct: 181 VLGKHLAAFD-RAIDMHVSNLRKKLPDRPDGKARIKTLRGRGY 222


>gi|261404682|ref|YP_003240923.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261281145|gb|ACX63116.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +         ++G  +   +  E      +     V  ++  +   G   L 
Sbjct: 10  LLVDDEPHILQFLELGLQNEGFEVRTASDGECALREAAGFEPHVIVLDVMMP--GMDGLA 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R ++     V +I ++    +   +    +G DD + KP    E+LAR+ A  R    
Sbjct: 68  VCRRLKEEGRDVAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQFP 127

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S       GP  +    ++    GE   L   E ++L+ L+   G  ++K+ I + ++  
Sbjct: 128 SLLGEIRLGPFTIDDRKKEISYLGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD- 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   E+N+VE +I  LR+KL +K     + + R  GY +D
Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGDK-EHRVIRTLRGAGYRVD 226


>gi|72162948|ref|YP_290605.1| response regulator receiver [Thermobifida fusca YX]
 gi|71916680|gb|AAZ56582.1| response regulator receiver [Thermobifida fusca YX]
          Length = 222

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G S++   +++  E L  +   D+  +   L       LE
Sbjct: 5   LLAEDDASISEPLARALRREGYSVDV--TVDGMETLDRARSGDIDLLVLDLGLPELDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+     P++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRSEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR--G 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    +R+ +D R   +      L  +E  +L  L+   GK V + QI   ++   
Sbjct: 121 GGEVPVVHGVRIDTDSRRAWLGDRELQLTTKEFDLLRVLVREAGKVVTREQIMREVWDT- 179

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +       ++ HIS LR+KL  +      + + R +G+  +
Sbjct: 180 NWWGSTKTLDMHISWLRRKLGDDANQPSYITTVRGVGFRFE 220


>gi|167761675|ref|ZP_02433802.1| hypothetical protein BACSTE_00009 [Bacteroides stercoris ATCC
           43183]
 gi|167763397|ref|ZP_02435524.1| hypothetical protein BACSTE_01771 [Bacteroides stercoris ATCC
           43183]
 gi|167698691|gb|EDS15270.1| hypothetical protein BACSTE_01771 [Bacteroides stercoris ATCC
           43183]
 gi|167700456|gb|EDS17035.1| hypothetical protein BACSTE_00009 [Bacteroides stercoris ATCC
           43183]
          Length = 229

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  ++  NS E    +  S  + +          G K+ 
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAEDALKMDISTYDLLLLDVMMGEISGFKMA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + +  +  +++P+I I+   +   T+  F+ G DD ++KP   RE+ ARV A+ RR + 
Sbjct: 66  SMLKKEKKTAKIPIIFITAKDTENDTVTGFNIGADDYISKPFSLREVAARVKAVLRRTRQ 125

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +       +     + +    +   + GE  PL ++E  IL  L+ N+G+  ++  I S 
Sbjct: 126 TETERAPEQIAYKSLVLDIIKKKVSIDGEEAPLTKKEFEILLLLLQNKGRVFSREDILSR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+   +  V +  ++ +I++LRKK+   +    + ++   GY  +
Sbjct: 186 IW-SDEVYVLDRTIDVNITRLRKKIG--IYGKCIVTRLGYGYCFE 227


>gi|189423131|ref|YP_001950308.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189419390|gb|ACD93788.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 235

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          +G ++E  ++        S     +  ++  L   G    
Sbjct: 5   ILVIDDDRELCGLLEEYLVAEGFAVESVHTGPQGAEQGSQGNYALIVLDVMLP--GLNGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R IR  S VP++ ++        +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 63  DVLRRIRGESSVPVVMLTARGEEVDRIVGLEMGADDYLPKPFNPRELVARIRAIQRRQST 122

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +      G + +    R          L   E  +LE L+A  G+ +++  I 
Sbjct: 123 AQKDGTAAEAVLVVGDLVLDPGRRTVLQGERSVVLTSIEFSVLELLLAQAGRVISRDDIC 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           S   G    + +   ++ H+S LR+KL     G + + S R +GY
Sbjct: 183 SQALGRQLNSFD-RSIDVHVSSLRRKLGPAGDGSERIKSVRGIGY 226


>gi|119716293|ref|YP_923258.1| two component transcriptional regulator [Nocardioides sp. JS614]
 gi|119536954|gb|ABL81571.1| two component transcriptional regulator, winged helix family
           [Nocardioides sp. JS614]
          Length = 228

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D   + D       + G  +E  +      E L S +  DV+ ++  L   G   
Sbjct: 3   ILVAEDDVRLADVLEESLAEAGWQVEVAHDGRSAYERLLSDSSLDVALLDWMLP--GLDG 60

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + + R +R     +P++ ++    ++  +   D+G DD + KP    E+LAR+ A+YRR 
Sbjct: 61  VTVARRLRDLGVALPILMLTARGDVRDRVSGLDAGADDYLPKPFDLDELLARLRALYRRG 120

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V     + G + V    R     G    L  RE  IL  L+++ G+ V++  I   ++
Sbjct: 121 SLVGEAPVQLGDLVVDPVARRVTRGGVEIVLSAREFDILHLLVSHAGRVVSRLMILDEVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +  +  NV++ H++ +R K+    G + + + R +GY +D
Sbjct: 181 DG-ETDLRSNVIDVHLAAIRAKIDKPFGTETITTLRGVGYRVD 222


>gi|114562749|ref|YP_750262.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114334042|gb|ABI71424.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
          Length = 234

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 97/231 (41%), Gaps = 19/231 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGK 56
            ++++D   +    +     D ++LEGFN+L   +         + + D   ++  L  K
Sbjct: 12  ILVVEDEPKIAQILV-----DFLTLEGFNTLVQHDGRDVIETIKAQQIDFMILDLMLPYK 66

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
               L + R +R  S +P++ ++        L   D G DD V KP   RE++ARV  I 
Sbjct: 67  --DGLTICRELRQFSMLPVLMLTARVDEIDRLMGLDIGADDYVCKPFSAREVVARVKTIL 124

Query: 117 RRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           RR++      S        +++  +    +V  +   L   E R+L  L+   G   ++ 
Sbjct: 125 RRVENTHGSQSEQVIRYKHLQINIERFKCQVDQQDVELTPVEFRLLHTLLKRPGVVHSRD 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
            +    Y + D  V    ++SH+  LR KL       + + S   +GY ++
Sbjct: 185 SLMQVCY-VDDRIVSSRTIDSHVKNLRHKLTQASQQKELLHSIYGVGYKVE 234


>gi|271966751|ref|YP_003340947.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509926|gb|ACZ88204.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 228

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A V+        + G ++    +           R D+  ++  L        
Sbjct: 4   LLLVEDDAQVRSALTRALTERGHAVISAAAGMPGLTRALEDRPDLVVLDLGLPD--LDGC 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R++RA S VP+I  +        +   D+G DD V KP     + AR+ A+ RR + 
Sbjct: 62  EVLRMLRAVSAVPVIVATARDDEPEIVRALDAGADDYVVKPFSAAHLDARIRAVLRRGRD 121

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++        G + +   GR+  + G    L  +E  +L YL A  G+ V+K ++ + ++
Sbjct: 122 ADEGTAPVRVGGLLIEQAGREAFLDGVRLDLTPKEFDLLHYLAARPGQVVSKRELLTEVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
                   +  V+ H+S LR+KL  +      + +   +G  I
Sbjct: 182 -RMAYGGADKTVDVHLSWLRRKLGESAQAPRYLQTVHGVGVKI 223


>gi|260684887|ref|YP_003216172.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260688545|ref|YP_003219679.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|260211050|emb|CBA66398.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260214562|emb|CBE07107.1| two-component system response regulator [Clostridium difficile
           R20291]
          Length = 278

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L+DD   + D    +  +DG    ++ +N L+    L   A  DV  ++  L      
Sbjct: 50  ILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAIS-LCKIACPDVVILDIMLPD--ID 106

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ + IR  S   ++ +S        +    SG DD + KP   REI  RV A  RR 
Sbjct: 107 GIEVCKKIREFSYCSILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIAFRVKAQLRRQ 166

Query: 120 KVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +        +   + G I +  +G           L  RE  +L Y+  N  K + K ++
Sbjct: 167 QYQSIVPSDSAVIKIGDITIDIEGNRVYKDRNEIELTGREYHLLSYMAQNVNKIIGKERL 226

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +  ++G++  ++ +N +  HI  +R+K+ +      +  + + LGY +
Sbjct: 227 YEQVWGVY-SSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKL 273


>gi|229494312|ref|ZP_04388075.1| transcriptional activator protein CopR [Rhodococcus erythropolis
           SK121]
 gi|229318674|gb|EEN84532.1| transcriptional activator protein CopR [Rhodococcus erythropolis
           SK121]
          Length = 225

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G        L  ++   ++  ++   I   ++  G+   +
Sbjct: 5   LVVEDEVRLAETIRRGLVAEGFVTAV--ELNGDDGFATACSDEFDVIVLDIMLPGKHGYD 62

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ +S         D FD G DD + KP     +LAR+ A+ RR   
Sbjct: 63  IVRDLRAREIWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVLLARLRALVRRGAP 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +          G    L  RE  +LE+LM N G  V KT+I  +++  
Sbjct: 123 QRPAILSVGDLSLDPAKHQVSRAGIELTLTPREYSVLEFLMRNNGVVVTKTEIVRSVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   +EN+VE +I  LRKKL    G   +++ R +GY  
Sbjct: 183 -NYEGDENIVEVYIGYLRKKLDLPFGTQSIETVRGVGYRF 221


>gi|209974323|gb|ACJ04041.1| CsrR [Streptococcus pyogenes serotype M3]
          Length = 228

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + +P    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVRPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|229917896|ref|YP_002886542.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469325|gb|ACQ71097.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 230

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  + DD   +++       ++G +L    + +    L S+   D+  ++  +   G   
Sbjct: 6   VICIADDDEAIRELLAIYLKNEGYALRFAKNGQEVLDLASTETIDLLILDLMMPVMG--G 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E    IR    +P++ ++   S    +     G DD + KP +  E+  RV ++ RR +
Sbjct: 64  IEACIEIRKTQFMPILMLTAKTSDLDLMQGISVGADDYIKKPFNPLEVTLRVKSLLRRYR 123

Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +      + +    R       +  L  +E  IL Y M +  + +   QI
Sbjct: 124 DYGSDRADLTSTLVFENVTLDLQTRQCRKDEMLIRLTPKEFDILAYFMRHPNQVLTVEQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           + A++G     V+ N V  HI+K+R+KL +       + +   +GY +
Sbjct: 184 YEAVWGEAAFEVD-NTVMVHITKIREKLEDTPRKPTIIKTVWGVGYRL 230


>gi|227499590|ref|ZP_03929697.1| response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227218349|gb|EEI83603.1| response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 234

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G       S E    +    R  ++ ++  L   G    
Sbjct: 8   ILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEKERPALAILDIMLP--GMSGY 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR       +I +S        +   + G DD + KP + +E++ RV ++ RR+ 
Sbjct: 66  EVCEKIRTEAPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRVN 125

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            S ++           GP  +    +          +   E  IL+Y + N+GK + + +
Sbjct: 126 FSQDKANNKIKESISDGPFTLDLYAKSFYKNEREIDVTPTEFTILQYFIQNKGKAMTRDE 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           I +  +G  + + +  +V+ +I ++R K+ +     + +++    GY 
Sbjct: 186 IMTKTWGE-NYSNDTKIVDVNIRRIRAKIEDNPAKPEYIETVWGTGYR 232


>gi|59713744|ref|YP_206519.1| two component response regulator [Vibrio fischeri ES114]
 gi|197337772|ref|YP_002158123.1| transcriptional regulator [Vibrio fischeri MJ11]
 gi|59481992|gb|AAW87631.1| two component response regulator [Vibrio fischeri ES114]
 gi|197315024|gb|ACH64473.1| transcriptional regulator [Vibrio fischeri MJ11]
          Length = 218

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 11/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG I    + G       +      L S A  D+  ++  L       L
Sbjct: 5   ILLVEDDKNLADGLIVSLEEAGYRCLHSENAANVSGLWSEA--DIVILDRQLPE--GDSL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                 +    VP+I ++   S++  +   DSG +D + KP    E+LAR+ A  R  + 
Sbjct: 61  TWLSQWKQIKDVPVILLTALVSVRDKVTGLDSGANDYLTKPFAEAELLARLRAHLRSPET 120

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               ++   G + + +  RD    GE   L R E  +L +L +N GK   + ++   ++G
Sbjct: 121 DEVKSKLVVGNLAIDTSTRDVVNSGENVTLTRTEFDLLLFLASNLGKVFTRDELLDQVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++       V++HI +LR+K+   +G + +++ R +GY +
Sbjct: 181 -YNHFPTTRTVDTHILQLRQKI---VGIE-IETLRGVGYKM 216


>gi|261415718|ref|YP_003249401.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372174|gb|ACX74919.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326913|gb|ADL26114.1| DNA-binding response regulator [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 242

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +G + L   +G  ++     E       S +  +  ++  L   G    
Sbjct: 10  ILIIEDEIAIAEGLVDLCELNGYRVKHVVDGESGLAEALSGQYGLVLLDLMLP--GMDGF 67

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   IR     +P+I +S   S    ++    G DD + KP     +LAR+ A+ RR +
Sbjct: 68  TVCDKIREKDKSLPIIILSAKNSDDDIINGLKFGADDYIPKPFSVPMLLARIEAVLRRSR 127

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +     +   G +RV           E     R+E  ILEYL  NR   + ++++   +
Sbjct: 128 QTMENEGKLVAGNLRVNFREYTGVRGTEELAFTRKEIEILEYLWNNRDHAIPRSELLRKV 187

Query: 178 YGLFD-EAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G  + E+V+   V+ HI+KLRKK+ +       + + R  GY +
Sbjct: 188 WGYENAESVDTRTVDIHITKLRKKIEDDPAHPKLLVTFRGEGYQM 232


>gi|255280977|ref|ZP_05345532.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bryantella formatexigens DSM 14469]
 gi|255268425|gb|EET61630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bryantella formatexigens DSM 14469]
          Length = 224

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++     F   G  +   +  E       +    +  ++  L   GE   
Sbjct: 5   LLVVEDDRRLQEIISDYFESKGWQVRVTDDGEEVLEKIQTNSYQLILLDVMLP--GENGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S VP+I I+     +  L+ +  G DD V KP     + A+V A+  R+  
Sbjct: 63  TICRKIREISDVPVIFITARVQEEDELNGYAMGADDYVTKPFSLPVLYAKVTALIGRMHG 122

Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S+   R   G I V     +     E   LP +E  +L + + N  +  ++ Q+    +G
Sbjct: 123 SSAGRRIRAGDIEVDVRTHEVWSGEERCELPPKEYELLLFFLENPKRIFSREQLLIRFWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D    E VV++HI KLRK L        + + R  GY ++ 
Sbjct: 183 -YDFDGNERVVDNHIKKLRKLLGKSGS--MIRTIRKSGYRMEV 222


>gi|322835012|ref|YP_004215039.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321170213|gb|ADW75912.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 233

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 96/230 (41%), Gaps = 19/230 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED--VSAIEAFLIGKGEK 59
            +L+DD   +      L       +EGFN +   +  Q+  + D  +  +   ++   + 
Sbjct: 4   ILLVDDDRELTSLLKELLE-----MEGFNVVVAYDGEQALEKIDNTIDLLLLDVMMPKKN 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E  + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ A+ RR 
Sbjct: 59  GIETLKELRQRHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAMLRRS 118

Query: 120 KVSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             S  +           E   +++    ++    GE   L   E  +L  L  + G+ V+
Sbjct: 119 NWSEQQQTNENNGSPTLEVDGLQLNPGRQEASFNGEALDLTGTEFTLLYLLAKHLGQVVS 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +  +   + G      +   ++ HIS LR+KL   + G     + R  GY
Sbjct: 179 REHLSQEVLGKRLTPFD-RAIDMHISNLRRKLPDRQDGHPWFKTLRGRGY 227


>gi|323525907|ref|YP_004228060.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323382909|gb|ADX55000.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 219

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G  A     G +++             +    +  ++  L       +E
Sbjct: 4   LLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKAGLALDTTSYALVVLDLGLPRV--SGME 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R A   VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR + 
Sbjct: 62  LLRRLRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQG 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +      + V    +  EV G+   L  RE  IL  L+ N+G   +++++  ++YG 
Sbjct: 122 RSVDVIRYRELSVNPAAQAVEVAGKRVSLTSREWAILMQLLTNQGIPQSRSRLEESLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E +E N +E H+S LRKKL    G   + + R +GY ++
Sbjct: 181 WQEEIESNAIEVHVSNLRKKL----GAHLIRTVRNIGYVVE 217


>gi|229513635|ref|ZP_04403099.1| two-component system response regulator OmpR [Vibrio cholerae TMA
           21]
 gi|229521780|ref|ZP_04411198.1| two-component system response regulator OmpR [Vibrio cholerae TM
           11079-80]
 gi|229341374|gb|EEO06378.1| two-component system response regulator OmpR [Vibrio cholerae TM
           11079-80]
 gi|229349512|gb|EEO14468.1| two-component system response regulator OmpR [Vibrio cholerae TMA
           21]
          Length = 263

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 31  LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGLS 88

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R +R  +  +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 89  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 148

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 149 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 208

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 209 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 255


>gi|226228024|ref|YP_002762130.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091215|dbj|BAH39660.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 226

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 95/220 (43%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +++   A     G +++   + +    L + +  DV  ++  L    +    
Sbjct: 4   LLVEDDDTLRESATAFLRASGFAVDPAGTGKMARSLAAVSPYDVVVLDIRLPD--DDGFV 61

Query: 63  LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           L   +RA +  P ++  +   +++  +   D G DD + KP    E++ARV A+ RR   
Sbjct: 62  LCTALRARTPAPRVLMATARDAVEDRIAGLDLGADDYLVKPYALGELVARVRALMRRPDH 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        + +    R+    G V  L  +E  +LE LM   G+ + +  I    +  
Sbjct: 122 AAPTLLRVEDLVLDPATREAGRNGRVITLTTKEFAVLEVLMRAPGRVLTREFIGEHAWD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +     NV++ +I++LR+K+        + + R  GY +
Sbjct: 181 DNFDPMSNVIDVYIARLRRKVDADGDVPLLSTVRGAGYRL 220


>gi|297194010|ref|ZP_06911408.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722840|gb|EDY66748.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 225

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E             +   D+  ++  L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLAGGVDLVVLDLGLP--GMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +RA    +P++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRAEGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++  
Sbjct: 123 EPAPAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 223


>gi|329114231|ref|ZP_08242993.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001]
 gi|326696307|gb|EGE47986.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001]
          Length = 243

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 99/220 (45%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D + + +   A     G  +   +    +  L+++ R +   +    +  G   L 
Sbjct: 23  LLVEDDSTIAEEIAAELTARGFKV--LHEATGDAGLEAALRLEADVMVVDRLLPGLDGLS 80

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           +   +R    ++P++ +S   ++   +    +G DD + KP    E++AR+ A+ RR   
Sbjct: 81  VIETMRQQGIRLPVLVLSALSAVDDRVTGLKAGGDDYLTKPFAIEELVARIEALLRRPDD 140

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + +   GPI +    R     G    L  RE R+LEYLM   G+ + ++ +   ++  
Sbjct: 141 TRSTKLHLGPIDMDLIERRVWRDGREIELLPREFRLLEYLMRRPGQVLTRSMLLEDVW-Q 199

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      N+V+ HI KLR+K+        ++S R  G+ +
Sbjct: 200 YRFIPRTNLVDVHIGKLRRKIDGPGEEPLIESIRGTGFRL 239


>gi|295106296|emb|CBL03839.1| two component transcriptional regulator, winged helix family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 230

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L+DD   +      +  D G +       E    L +  + D+  ++  +   G    ++
Sbjct: 2   LVDDDESLHVLMRRIVEDAGYAFCAAFDGEEGLALLADEKPDLLLLDVMMP--GMNGFDV 59

Query: 64  PRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R +R   + +P++ +S    +      F +G DD V KP    E+L R+ A  RR K  
Sbjct: 60  CRRMREEGRRIPIVFLSAKGDIVDKSIGFKAGGDDYVVKPFSPDELLLRIEAHLRRHKDD 119

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                       + TG + VF +  +  + G    L  +E  IL  L AN G+   + QI
Sbjct: 120 LAFAKAVNREGSSTTGDLEVFFNQYEARLHGRKVDLTAKEFEILALLAANPGQVFTRQQI 179

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           F+ I+G  D  V+E+ +   + K+R+K+  N      + +   +GY  
Sbjct: 180 FAHIWGE-DSEVDESSITVFMRKIREKIEENPSQPKYLLTVWRVGYKF 226


>gi|229917735|ref|YP_002886381.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469164|gb|ACQ70936.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 230

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   ++   I      G  +  F +    E + +  RE    +   ++       
Sbjct: 4   ILVAEDEHAIRSFIIVNLKRAGFDV--FEATNGREAVTAFDREPFDVVLLDVMMPEMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E    IR     V +I ++     +  ++    G DD + KP    E++AR+ A+ RR+ 
Sbjct: 62  EACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRVE 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +  + R ++GP  +    +     G+   L   E  ++ +L+ N    +++  +  A
Sbjct: 122 KVKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALLDA 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
           ++G+ +   +   V+ +I +LR+K+ +       +++    GY 
Sbjct: 182 VWGV-NYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYK 224


>gi|254448321|ref|ZP_05061783.1| response regulator receiver domain protein [gamma proteobacterium
           HTCC5015]
 gi|198262188|gb|EDY86471.1| response regulator receiver domain protein [gamma proteobacterium
           HTCC5015]
          Length = 226

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 91/221 (41%), Gaps = 6/221 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D     D       + G  +    +      L  +   D+  ++  L         + 
Sbjct: 2   VEDEIKTGDYLQQGLTESGFLVTLVRNGLDGHHLAMTETFDLLVLDVMLPDV--DGWRIV 59

Query: 65  RIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
           + +R A  Q P++ ++   S+   +   + G DD + KP    E+LARV  + RR  V  
Sbjct: 60  QSLREAGRQTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRSTVPV 119

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
             ++     + +          G    L  +E  +LE L+  +G+ + ++ I S ++ + 
Sbjct: 120 MTDQIRVADLTLDLPRHRAMRAGRKINLSHKEFCLLELLVRRKGEVLTRSLIASQVWDM- 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   + NV++  I +LR K+ +      + + R +GY ++ 
Sbjct: 179 NFDSDTNVIDVAIRRLRAKIDDDYEPKLIHTVRGMGYKLEV 219


>gi|89902709|ref|YP_525180.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347446|gb|ABD71649.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 224

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 110/225 (48%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG +      G +++   S  E +  L ++   D+  ++  L       
Sbjct: 3   ILIAEDDQVLADGLLRTLRSSGAAVDHVASGTEADAALMTNTEFDLLILDLGLP--KMHG 60

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +RA  S +P++ ++    ++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 61  LEVLKKLRARGSALPVLILTAADGVEERVKGLDLGADDYMAKPFSLHELEARVRALSRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI- 177
           +  +++  + GP+     GR   + G +  L  RE  +LE ++   G+ V+K Q+   + 
Sbjct: 121 MGSASSTIKHGPLIYDQSGRVATIDGVMVELSARELGLLEVMLQRVGRLVSKDQLVERLC 180

Query: 178 -YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +G   E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 EWG---EEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220


>gi|46397856|sp|Q01473|RCAC_FREDI RecName: Full=Protein rcaC
 gi|387603|gb|AAA24892.1| putative [Fremyella diplosiphon Fd33]
          Length = 651

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 23/231 (9%)

Query: 1   MFVLIDDRALVK--------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
           + ++ DD  L+K          YI     DG     + S         +   D+  ++  
Sbjct: 3   ILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGS---------TFEYDLIILDIM 53

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L       + L +  RA    VP++ ++   ++   +   D+G DD V KP    E++AR
Sbjct: 54  LPN--LDGISLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIAR 111

Query: 112 VAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ RR   +       G + +     +    G    L   E  +LE L+ N     + 
Sbjct: 112 IRALLRRGSNNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSS 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
            ++   ++   D   E   V SH+ +LR KL       D + +    GY +
Sbjct: 172 EELLDKLWSSEDFPSEA-TVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYL 221



 Score = 67.2 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 16/127 (12%)

Query: 1   MFVLIDDRALVKDGYIAL---FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57
           M +  DD    +D    L       G  +      +    +  +   D   ++  +    
Sbjct: 529 MIL--DDD---QDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQ-- 581

Query: 58  EKVLELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
               EL +++R+     ++P++ +S      T    F  G DD + KP+   E+  R+  
Sbjct: 582 INGFELCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI-- 639

Query: 115 IYRRLKV 121
             RRL+ 
Sbjct: 640 -LRRLQR 645


>gi|307299054|ref|ZP_07578856.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915479|gb|EFN45864.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 225

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D   +          +G   E     E   ++  +   DV  ++  L    G +V
Sbjct: 3   ILIVEDERSLGRLLKESLEREGFVAELAVDGEEGLYMALNGPFDVIVLDILLPKLTGWQV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R   + S++P++ ++   S++  +  FD G DD + KP   RE++ R+ ++ RR +
Sbjct: 63  LEKIRD--SGSRIPVLMLTALDSIEDKVRGFDLGADDYLPKPFDIRELVVRIQSLLRRAQ 120

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + +    +      E   L ++E +ILEYLM N G+ V K+++   +
Sbjct: 121 FGGAPSRVLRVGDLELDMSLKTASRGNEKIELRKKEYQILEYLMLNSGRVVPKSELEEHL 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   DE   + V+ SHI  +RKK+        + + R +GY
Sbjct: 181 WNEDDELWSD-VIRSHIKNIRKKVDGGRRKKLIKTVRGMGY 220


>gi|229014970|ref|ZP_04172051.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228746320|gb|EEL96242.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 207

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 20/219 (9%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           +  +G      +D  ++E    LE +E+       D+  ++  +       ++    IR 
Sbjct: 1   MENEGLQTQKVED--AIEALKQLEEKEF-------DLIILDIMMPN--MDGIKACMKIRE 49

Query: 70  HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN------ 123
              +P+I +S        +    SG DD ++KP +  E++ARV +  RR    N      
Sbjct: 50  ERTIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRYTKYNTETNKN 109

Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            N  E G + + +D R   V+G+   L  +E  ILE L  N+G  ++  +I+ A++   +
Sbjct: 110 KNIIEIGNLTLNTDARQVWVRGKETRLTPKEFDILELLARNKGMVLSIEKIYEAVW-KEN 168

Query: 183 EAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
               +N V  HI+++R K+         + +   +GY I
Sbjct: 169 FYKSDNNVMVHITRIRDKIEEDSKHPIYIKTVWGVGYKI 207


>gi|254302887|ref|ZP_04970245.1| OmpR family response regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323079|gb|EDK88329.1| OmpR family response regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 224

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++            S++     E    + S    DV  ++  L  K     
Sbjct: 4   ILIIEDDKNIQRLLGLELRHKNYSVDSAYDGEQGIEIFSKNSYDVVLLDLMLPKK--SGK 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R     P+I I+   S+   ++  D G +D + KP    E+LAR+  + R  + 
Sbjct: 62  EVCRELRKLGDAPIIVITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVVTRNKEN 121

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           SNN+       I++    +   +      L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 122 SNNKHFYIENEIKMDISAKKVFLNEVEISLTKTEFLILEYFMKNKGLSCSREKIIVGVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   EE +V+ +I+ LRKK+  K   + + + R  GY   +
Sbjct: 182 -YDFDGEEKIVDVYINSLRKKIDPK--SNYIHTIRGFGYIFQY 221


>gi|229080381|ref|ZP_04212905.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2]
 gi|228702943|gb|EEL55405.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2]
          Length = 230

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  ++   + +            +  ++  L   G    
Sbjct: 15  ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNPYQLVILDILLP--GMNGH 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 73  ELLREFRKLNNTPVLMMTALSDDENQIRSFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 132

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +  +        E   L  +E  IL  L+   GK ++   I S ++G +
Sbjct: 133 VAKEIHYGKLTLLPEDFKVFYDDEELLLTLKEFEILMLLVQKNGKTLSHEVILSRVWG-Y 191

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   + + V +HI  LR KL +    + + + R +GY ++
Sbjct: 192 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLE 227


>gi|172058611|ref|YP_001815071.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991132|gb|ACB62054.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 223

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 92/222 (41%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +   +E   S E    L ++   D+  ++  L        
Sbjct: 3   ILVVDDEESIRHLVRLQLEIEHYQVETAKSGEEALKLHATQSFDLIILDLMLPDT--TGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +R+    +P++ ++    +   +     G DD + KP +  E++ RV  + +R+ 
Sbjct: 61  DLIPQLRSSQPDLPILMLTARDQMNDKIIGLQLGADDYMTKPFNGTELVLRVKNLLKRVV 120

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    +   + + S  R   + GE  PL  RE  +L   + +  +   + ++   +
Sbjct: 121 QMTPKPFTVDDSFLTIDSAERTILLDGEPLPLTYREYALLALFLQHPKRVFEREELLEQV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G FD + +   V+  + +LRKKL  +   + + +    GY 
Sbjct: 181 WG-FDFSGQTRAVDIMVQRLRKKLGPQG--ERLKTIYGAGYK 219


>gi|271500465|ref|YP_003333490.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270344020|gb|ACZ76785.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 222

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L++        + G  ++     +  ++       D++ ++  L    E   
Sbjct: 3   ILVIEDNVLLRHHLNVQLNEMGHQVDAAADAKEADYFLQEHAPDIAIVDLGLPI--EDGT 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R+H  ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRWRSHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  V    R+  V GE   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIISLPPFEVDLSRRELLVHGEPVKLTAFEYTIVETLIRNNGKVVSKESLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKKL++    D + + R  GY  D
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQSANSHDVITTVRGQGYRFD 221


>gi|238922778|ref|YP_002936291.1| hypothetical protein EUBREC_0366 [Eubacterium rectale ATCC 33656]
 gi|238874450|gb|ACR74157.1| hypothetical protein EUBREC_0366 [Eubacterium rectale ATCC 33656]
          Length = 231

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED--VSAIEAFLIGKGEK 59
            ++++D   V  G   L       L+ ++ +  +  +++  + D   S +   ++     
Sbjct: 4   ILVVEDDKTVYSGIKKLLE-----LQHYSVVIAQNGMEALEKIDESFSLVIMDIMMPQLD 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E  R +R    VP++ +S        L+  + G DD + KP  + E++++V A+ RR 
Sbjct: 59  GIETCRRMRERHSVPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALIRRY 118

Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                        +   ET  +++F++    E       L  +E  IL+ LM N  +   
Sbjct: 119 LVYDSGSANRTNKDETIETDGLKLFTNRNKVEFNDNEIKLTGKEYEILKLLMKNPDRIYT 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              I+  ++        +N V  HI  LR KL    G   + ++   GY  +
Sbjct: 179 IEMIYEMVWDEAFTYNAKNTVMVHIKNLRNKLIKACGDACIHTEWGRGYRFE 230


>gi|206602093|gb|EDZ38575.1| Putative two component transcriptional regulator, winged helix
           family [Leptospirillum sp. Group II '5-way CG']
          Length = 231

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +       F  +   +    +      L  +   D+  ++  L   G   L
Sbjct: 5   ILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLP--GLDGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R ++     S +P++ ++        +   + G DD + KP + +E+LAR+ AI RR
Sbjct: 63  SINRSLKKDPLTSGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRR 122

Query: 119 LKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +        R     + +     +      +  L  +E  +L  L+ N G+ + +  + 
Sbjct: 123 TEQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQMLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G  D    +  V+ HI +LRKKL      D V + + +GY  
Sbjct: 183 DLVWGA-DYEGTDRTVDVHIRRLRKKLGAY--QDRVQTVKQIGYKF 225


>gi|67921796|ref|ZP_00515313.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67856388|gb|EAM51630.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 223

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A + +    +   +G +++  +  +    L      D+  ++  L   G+  L
Sbjct: 3   ILLVDDEAELTEPLYHVLSHEGYNVDVADDGQKGYQLALQNTYDLLILDWMLP--GKPGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+     P++ ++   +L   +   D+G DD + KP   RE++ARV A+ RR  
Sbjct: 61  SICRELRSRGKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRRSP 120

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V+ N  + G + +  D +    Q  +  L  +E ++L Y M +  + +   QI+  
Sbjct: 121 ALENVATNPLKIGDLELEPDNQVAYRQSRIINLSDKEVKLLTYFMEHPQQLLTHEQIYQF 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++    E    NV+ + I  LR+K+  +     + +    GY  
Sbjct: 181 LW-EDSEKPSSNVLAALIRLLRRKIEEEG--PLIHTVYGKGYRF 221


>gi|319898567|ref|YP_004158660.1| two-component response regulator [Bartonella clarridgeiae 73]
 gi|319402531|emb|CBI76074.1| two-component response regulator [Bartonella clarridgeiae 73]
          Length = 228

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D           F + G + +     +    L  +   DV  ++  L  +    L
Sbjct: 3   ILIIEDDRETGRYLEKAFLEAGHAADIAYDGDTGYTLAETIDYDVMVVDRMLPHR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +RA     P++ +S    +   +    +G DD + KP    E+LARV  + RR  
Sbjct: 61  SIVAGLRAKGNETPVLILSALSQVDDRITGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +      G + +       +   +   L  RE R+LEYLM   G+ V +T +   ++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGEKNIVLQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NV++ HIS+LR K+        + + R  GY +
Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDVPLLHTVRGAGYML 221


>gi|254517513|ref|ZP_05129569.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911262|gb|EEH96463.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 231

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 101/227 (44%), Gaps = 11/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        +G+ +  F + +  E L+   +E +  I   ++      ++
Sbjct: 5   LVVDDEKEIRDAIDIYLRGEGMKV--FKAKDGVEALELLDKEKIHLIVLDIMMPRMDGIK 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
               IR    +P+I +S        +   + G DD + KP +H E++ARV +  RR +  
Sbjct: 63  TCLKIREKRNLPIIMLSAKGEDSDKILGLNVGADDYIAKPFNHLELVARVKSQLRRYQKP 122

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S +  E   + + +  +   ++GE   +   E +IL+ L +N G+  +  +I+ 
Sbjct: 123 LELEGESPDIIEVRDLIINNKEKTIFLRGEDVKVTATEFKILQLLASNLGRVFSIKEIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++        EN V  HI ++R+K+  N    + +     +GY I+
Sbjct: 183 KVWEEP-FYRSENTVTVHIRRIREKIEINTKDPEYIKVVWGVGYKIE 228


>gi|255505528|ref|ZP_05346649.3| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255267413|gb|EET60618.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 251

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 108/220 (49%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++ +  +  D G +     + +  E L    R+ +  I A ++       
Sbjct: 30  ILVVEDNADMRELFCTVLADHGYNS--IPAADGAEALDIMDRQYIDLIVADIMMPNMDGY 87

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +R A+  +P++ ++           F +G DD + KP++  E++ RV A+ RR +
Sbjct: 88  QLTKALRDANYTLPVLMVTAKDQFIDLQQGFRTGADDYMIKPVNVNELVLRVEALLRRAR 147

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S+  +   G   +  D     + G+   LP++E  +L  L++   K   + Q+   I+G
Sbjct: 148 ISSEKKITIGSTVLDYDALTVTIHGKETLLPQKEFYLLYKLLSYPNKIFTRQQLMDEIWG 207

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +F E  +E  V +HI++LR K  +   F+ + + R LGY 
Sbjct: 208 MFSE-TDERTVNTHINRLRDKFSDCSDFE-IVTVRGLGYK 245


>gi|170695630|ref|ZP_02886773.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170139429|gb|EDT07614.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 219

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G  A     G +++             +    +  ++  L       ++
Sbjct: 4   LLVEDDDLIGCGVEAGLRQAGFTVDWARDGHKAGLALDTTSYALVVLDLGLPRV--SGMD 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + IR A + VP++ ++   ++   +   ++G DD + KP    E+ AR  A+ RR + 
Sbjct: 62  LLKRIRDAGNDVPVLVLTARGTVVDRVSGLEAGADDYLGKPFDLTELTARCRALLRRAQG 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + V    +  ++ G   PL  RE  IL  L+ N+G   +++++  ++YG 
Sbjct: 122 RSVELICYGDLTVNPAAQTAQLAGTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + +E N +E HIS LR+KL    G   + + R +GY ++
Sbjct: 181 WQQEIESNAIEVHISNLRRKL----GAKLIRTVRNIGYVVE 217


>gi|160886208|ref|ZP_02067211.1| hypothetical protein BACOVA_04215 [Bacteroides ovatus ATCC 8483]
 gi|237723017|ref|ZP_04553498.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|260173666|ref|ZP_05760078.1| two-component system response regulator [Bacteroides sp. D2]
 gi|293372570|ref|ZP_06618952.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|299146715|ref|ZP_07039783.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|315921928|ref|ZP_07918168.1| two-component system response regulator [Bacteroides sp. D2]
 gi|156108093|gb|EDO09838.1| hypothetical protein BACOVA_04215 [Bacteroides ovatus ATCC 8483]
 gi|229447539|gb|EEO53330.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|292632379|gb|EFF50975.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|298517206|gb|EFI41087.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|313695803|gb|EFS32638.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 229

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + +       ++G  ++  NS E E      +   +  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAE-EAMKMDISSYHLILLDVMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
             + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR  
Sbjct: 65  ANILKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTV 124

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +    R     + +    +   +  E  PL ++E  IL  L+ N+G+  ++  I +
Sbjct: 125 TTETERVPERLTYQSLVIDITKKKVSIDDEEVPLTKKEFEILLLLVQNKGRVFSREDILA 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 185 RIW-SDEVYVLDRTIDVNITRLRKKIGVYG--KCIVTRLGYGYCFE 227


>gi|94264346|ref|ZP_01288138.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455240|gb|EAT05453.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 257

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   +     A     G +LE   SL            D+  ++  L       L
Sbjct: 34  LLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPD--GDGL 91

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           E    +++ H Q+P+I ++    +   +   + G DD V KP    E+LAR+ A  R   
Sbjct: 92  EFCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANP 151

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +    + G + +    +  +V G+   L  +E ++L  L  NR   V + +I   +
Sbjct: 152 GAGTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLAENRNHLVTREEIRKRL 211

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +          V++ HI  LR+K+         + +    GY  
Sbjct: 212 WRDSKIYSWSRVIDVHIQHLRQKVEETPSQPRHIVTVPGRGYRF 255


>gi|322806176|emb|CBZ03744.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 233

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 17/231 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEK 59
           +++DD   ++D           S+E  N ++  + L +       ++  I   ++     
Sbjct: 7   LVVDDEKEIRDAIEIYLR----SIESINIIKAADGLDALDILENNEIHVIILDIMMPKLD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +     IR  + +P+I +S        +   + G DD + KP +  E++ARV +  RR 
Sbjct: 63  GIRTCMKIRERNNIPIIMLSAKNEDTDKILGLNIGADDYIAKPFNPLELVARVNSQLRRY 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      ++      + +        V G+   L   E  IL  L  N G+    +
Sbjct: 123 TNLGNFPKTADDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNLGRVFPSS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           QI+  ++        EN V  HI +LRKK+  +      +     +GY ID
Sbjct: 183 QIYEYVWNEP-SFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKID 232


>gi|320322852|gb|EFW78943.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 225

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 4/220 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D     D       + G +++          L       +  ++  L   G     
Sbjct: 4   LIIEDEEKTADYLRRGLTEQGYAVDVERDGIEGLHLALENDHAIIILDVMLP--GLDGFG 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA  Q P+I ++    +   +     G DD + KP    E++AR+ A+ RR    
Sbjct: 62  VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121

Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +     + +    R     G    L  +E  +L  L   +G  ++KT I   ++ + 
Sbjct: 122 EPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   + NVVE  I +LR KL        + + R +GY ++
Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220


>gi|307330553|ref|ZP_07609694.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306883802|gb|EFN14847.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 226

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  V  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGLQGGVDLLVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           + R +R      P++ ++       T+   D+G DD V KP    E+LARV A+ RR  +
Sbjct: 63  VCRRLRTEGHGFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAV 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    +  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++ 
Sbjct: 123 ETQQQQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWD 182

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
               +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TTWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 224


>gi|255280497|ref|ZP_05345052.1| DNA-binding response regulator SrrA [Bryantella formatexigens DSM
           14469]
 gi|255268962|gb|EET62167.1| DNA-binding response regulator SrrA [Bryantella formatexigens DSM
           14469]
          Length = 229

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G  +E       +  ++ +  +D+  +   L+       
Sbjct: 4   ILIIEDEESIAELEKDYLELSGFEVE--TERRGDVGMKKALEQDIDLLILDLMLPEVDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R    +P++ +S        +     G DD + KP    E++ARV A   R + 
Sbjct: 62  EICRRVRERKDIPVLMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N+  E   I++    R   V GE      +E  +L +L  N      K ++F
Sbjct: 122 LIHSNMKENDIVEIRGIKIDKTARRVWVNGEERNFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             I+ + +   +   V  HI K+R+K+  +      +++   +GY  
Sbjct: 182 REIWDM-ESIGDIATVTVHIKKIREKVETDTSKPQYIETIWGVGYRF 227


>gi|187777132|ref|ZP_02993605.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
           15579]
 gi|187774060|gb|EDU37862.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
           15579]
          Length = 225

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    S       QS    D+  ++  L        
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPD--ISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++   S  + L+ +  G DD + KP   ++++A+V A+ +R+K 
Sbjct: 63  NVCERIREESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N      + +    +  E   +   L   E +IL  L  N  K  ++ ++   I  
Sbjct: 123 NQCKNLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILAKNPNKIFSREELMDYI-S 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +  + + ++++HI  +R KL         + + R +GY  + 
Sbjct: 182 RDNTCIYDRIIDTHIKNIRAKLDQDSKSPTYIKTIRGMGYRFNV 225


>gi|254976943|ref|ZP_05273415.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255094330|ref|ZP_05323808.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255316083|ref|ZP_05357666.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255518743|ref|ZP_05386419.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255651862|ref|ZP_05398764.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|306521645|ref|ZP_07407992.1| two-component system response regulator [Clostridium difficile
           QCD-32g58]
          Length = 276

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L+DD   + D    +  +DG    ++ +N L+    L   A  DV  ++  L      
Sbjct: 48  ILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAIS-LCKIACPDVVILDIMLPD--ID 104

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ + IR  S   ++ +S        +    SG DD + KP   REI  RV A  RR 
Sbjct: 105 GIEVCKKIREFSYCSILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIAFRVKAQLRRQ 164

Query: 120 KVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +        +   + G I +  +G           L  RE  +L Y+  N  K + K ++
Sbjct: 165 QYQSIVPSDSAVIKIGDITIDIEGNRVYKDRNEIELTGREYHLLSYMAQNVNKIIGKERL 224

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +  ++G++  ++ +N +  HI  +R+K+ +      +  + + LGY +
Sbjct: 225 YEQVWGVY-SSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKL 271


>gi|119386003|ref|YP_917058.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119376598|gb|ABL71362.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 219

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  ++           G S++    L+      + A  D+  ++  L     + +
Sbjct: 3   ILLIEDDTVLGAAVRDQIAAGGQSVDWVTRLDAAGDAMAGAGYDLILLDLMLPD--GRGI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA   V P+I ++    +   ++  ++G DD + KP    E+ AR+ ++ RR  
Sbjct: 61  TFLRSLRAGGNVTPVIILTALDQISDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYS 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + N     G + V    R     G    L  RE  + E  +   G+ ++K Q+   +Y 
Sbjct: 121 GNPNPIIVHGALAVDLALRSIRRDGRPVQLTAREWALFEAFLTRPGQLLSKAQLEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E H+S+LRKKL    G   ++++R LGY +
Sbjct: 180 AFDTEVESNTIEVHVSRLRKKL----GAAVIETERGLGYRL 216


>gi|325845344|ref|ZP_08168644.1| putative response regulator SaeR [Turicibacter sp. HGF1]
 gi|325488598|gb|EGC91007.1| putative response regulator SaeR [Turicibacter sp. HGF1]
          Length = 224

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59
            +++DD   + +    +   +G S   F++    E L    +   D+  ++  L      
Sbjct: 6   ILIVDDEIEIIELLETVLKHEGFS-HIFHATTGTEALSLLKALNPDLVLLDVMLPD--LS 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             +L + I  H Q+P++ IS        L  F  G DD + KP   +E+  RV A   RL
Sbjct: 63  GHQLIKEIHQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFSAKEVAFRVKA---RL 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K +    + G I +           E   L  +E ++L YL+ +  K V+K QI   ++G
Sbjct: 120 KTTTKTIQFGNITITDG--IVSKNNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWG 177

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             D    +N +  HI +LRKK+  +      + +   LGY  
Sbjct: 178 E-DYFEFDNTISVHIRRLRKKIEVDPSKPKHITTIIGLGYKF 218


>gi|256379472|ref|YP_003103132.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255923775|gb|ACU39286.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 223

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +          +G +++  +  E   W  S    DV  ++  L   G     
Sbjct: 4   LLVDDDRRLVGLLARGLVAEGFAVDVEHDGEAGLWRASEHAYDVVVLDIMLP--GLNGYR 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R A  + P++ ++         +  D+G DD + KP  +  ++AR+ A+ RR   
Sbjct: 62  VCARLRDAGVETPILMLTAKDGELDEAEGLDTGADDYLTKPFSYVVLVARLRALARRGAA 121

Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               A   G + V    R    +G    L  +E  +LE+L   +G+ V K ++ + ++  
Sbjct: 122 GRPAAVVAGDLVVDPATRACSRRGTPISLTAKEFAVLEHLARRKGRVVTKDEVLAGVWDS 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             EA + N+VE ++S LR+K+    G   + + R +GY ++ +
Sbjct: 182 AREA-DHNLVEVYVSALRRKIDLPFGTFTITTVRGVGYRLEES 223


>gi|121593850|ref|YP_985746.1| two component heavy metal response transcriptional regulator
           [Acidovorax sp. JS42]
 gi|120605930|gb|ABM41670.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax sp. JS42]
          Length = 227

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G   +   +      L      D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLP--GLDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R    Q+P++ ++    ++  +   + G DD + KP    E+LARV  I RR +
Sbjct: 61  QVLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N      + +    R     G    L  +E  +LE L+   G+ + ++ I S ++
Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  + +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRLKIDEGQDVKLIQTVRGMGYVLE 222


>gi|294638284|ref|ZP_06716537.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC
           23685]
 gi|291088537|gb|EFE21098.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC
           23685]
          Length = 232

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G  +   +  E    +   A  D+  ++  +  K    +
Sbjct: 4   ILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLD-ASIDLLLLDVMMPKK--NGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R H Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  DTLKELRQHHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSSW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +  +          +   +++    ++    G+   L   E  +L  L  + G+ V++  
Sbjct: 121 NEQQQNGDNGAPILQVDRLQLNPGRQEASFDGQPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   + G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPERQDGQPWFKTLRGRGY 226


>gi|261380059|ref|ZP_05984632.1| transcriptional regulatory protein OmpR [Neisseria subflava NJ9703]
 gi|284797273|gb|EFC52620.1| transcriptional regulatory protein OmpR [Neisseria subflava NJ9703]
          Length = 225

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD AL+ +        +G+++      E       + + DV  +++ +       L+
Sbjct: 5   LLVDDDALLTELLTEYLTAEGLNVHSVPDGEAGVQEILTGQYDVVVLDSMMP--KMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR + S
Sbjct: 63  VLKNVRTQSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQHS 122

Query: 123 ------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI--- 173
                  N      + ++   R   ++     L   E  +LE LM + G+ V+K  +   
Sbjct: 123 TEQNNAPNSISVSDVVLYPAKRQASIKDTPLELTSTEFNLLEVLMRHAGQVVSKETLSIE 182

Query: 174 -FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-----RSIDVHISSIRHKLGDA---SLIQTVRGLGYLFVKN 225


>gi|163815716|ref|ZP_02207088.1| hypothetical protein COPEUT_01897 [Coprococcus eutactus ATCC 27759]
 gi|158449021|gb|EDP26016.1| hypothetical protein COPEUT_01897 [Coprococcus eutactus ATCC 27759]
          Length = 220

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++  +   G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSN-PLKINMEELHRYDLILLDIMMP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI   ++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    ++ + +HI  +R K  +   + P+ +   +GY  +
Sbjct: 180 FDSESNDSTIITHIKNIRVKFAD-YDYTPIKTVWGIGYKWE 219


>gi|238758700|ref|ZP_04619874.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
           35236]
 gi|238702997|gb|EEP95540.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
           35236]
          Length = 239

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|148975848|ref|ZP_01812637.1| two-component system response regulator (Pho family) protein
           [Vibrionales bacterium SWAT-3]
 gi|145964593|gb|EDK29846.1| two-component system response regulator (Pho family) protein
           [Vibrionales bacterium SWAT-3]
          Length = 224

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +    +  F  +G+++              +   DV  ++  L  K     
Sbjct: 3   ILLIEDDIHIARFLVNGFQQEGITVTHAIDGIDGLHEAVTEEYDVIILDIMLPKK--DGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P+I +S   S++  +    SG DD + KP    E+LAR   + RR K
Sbjct: 61  EVLAELRGQGYATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLVRRGK 120

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              ++      GP+ +       +   +   + +RE  +++ L+ N    ++KT I   +
Sbjct: 121 QPTSQPLELHYGPLSLDLLKHTLQRDQQTITINQREFMLMKLLLENPESVMSKTAILEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G      + NVV+  + +LR K+        + + R +GY +
Sbjct: 181 WG-HQFDPQTNVVDVLVCRLRSKVDKGFSKPLIHTLRGVGYVL 222


>gi|239815367|ref|YP_002944277.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239801944|gb|ACS19011.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 219

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 109/221 (49%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  + L   +  +++     E  E    + + D+  ++  +  +    L
Sbjct: 3   LLLLEDDVMIGEAVLDLLRAEQYAVDWVKDGEAAESALRTQQYDLVLLDLGVPRR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  Q +P++  +   S+Q  ++  D+G DD V KP    E+LAR+ A+ RR  
Sbjct: 61  EVLRSLRARKQRMPVLIATARDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   + +    R+  V+G+   L  RE  +LE L+A  G  +++ Q+   +Y 
Sbjct: 121 GRAEPVYEHMGVSINPATREVAVEGQPVVLSAREWAVLEPLIARPGMVLSRAQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE +  N VE ++  LRKKL    G + + + R +GY +
Sbjct: 181 WKDE-ISSNAVEVYVHGLRKKL----GAELIRNVRGVGYMV 216


>gi|170761007|ref|YP_001787015.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407996|gb|ACA56407.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+++  F + +  + L      D+  I   ++      ++
Sbjct: 7   LIVDDEDEIREAVEIYLKNEGIAV--FKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR +  +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 65  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVNL 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + ++   G + +    +   V G+   L   E RILE LM N+G+  +  +I+  
Sbjct: 125 GNYKETEDKVVAGALILDKKRKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 AWKEPYYNGE-NTVAVHIRRIREKIEINSREPRYLKVVWGIGYKI 228


>gi|91788575|ref|YP_549527.1| osmolarity response regulator [Polaromonas sp. JS666]
 gi|91697800|gb|ABE44629.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 245

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +     +   R+ V  I   L+  GE  L
Sbjct: 13  ILILDDDARIRDLLRRYLAQEGFEVILAEDSKALN--RIMLRDAVDLIVLDLMMPGEDGL 70

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA +   P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 71  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRRP 130

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +               GP       R     GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 131 TAEVPGAPSSDQEVITFGPFSFDMGLRTLHKNGEELPLTTGEFAMLKTLVRHPRQPLSRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 191 KLAQLARGR-EFEPFDRSLDVQVSRLRKLIEVDAAVPRYIQTVWGIGYVF 239


>gi|29346092|ref|NP_809595.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29337986|gb|AAO75789.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 245

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +         + G S+   +       +      D+  ++  +       L
Sbjct: 25  ILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMP--KINGL 82

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL  + R     Q P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 83  ELCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRN 142

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K +  N+     + +  + R  +       L  +E R+LEY M ++G  +++  +   ++
Sbjct: 143 KETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +     N+V+ +++ LR K+        + +   LGY ++
Sbjct: 203 DK-NFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 244


>gi|300716267|ref|YP_003741070.1| DNA-binding transcriptional regulator [Erwinia billingiae Eb661]
 gi|299062103|emb|CAX59219.1| DNA-binding transcriptional regulator [Erwinia billingiae Eb661]
          Length = 222

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  L++        D G  ++     +  ++  +    D++ ++  L    E  + 
Sbjct: 4   LVVEDNQLLRHHLAVQLRDMGHQVDAAEDAKEADYFLNEHTPDITLVDLGLPD--EDGMA 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+   + P++ ++     Q  ++  ++G DD V KP H  E++AR+ A+ RR   
Sbjct: 62  LIRRWRSEDVKQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVVARMQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  +      L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 LASQIISLAPFQVDLSRRELTINDTQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKMQAEHPLDVITTVRGQGYRFD 221


>gi|291523336|emb|CBK81629.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 246

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 109/223 (48%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  ++  N  E    +  +   D+  ++  L   G   +
Sbjct: 23  LLVVEDEKKLCDMIAKSLHQAGYEVDTCNDGEQALDMIYAELYDLIVLDLNLP--GMDGM 80

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R  ++   ++ +S    +   ++  DSG +D + KP H +E+ ARV ++ RR  
Sbjct: 81  EILRELRKENEETKVLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSLTRRKF 140

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V  N   E G +R  +  R    +     L R+E  ILEYL+ N+G+ V++ ++   ++ 
Sbjct: 141 VQKNICLECGKLRFDTRERVAYAEDNPVALTRKENGILEYLLLNQGRPVSQEELIEHVW- 199

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D +V+     +  H+S LRKKL+  LG+DP+ +K   GY I
Sbjct: 200 --DSSVDSFSGSIRVHMSSLRKKLKAGLGYDPIVNKIGEGYKI 240


>gi|257455665|ref|ZP_05620894.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60]
 gi|257446948|gb|EEV21962.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60]
          Length = 225

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +LI+D A + DG +       + ++ F   +  E        D   ++  L  G G  +
Sbjct: 4   ILLIEDDATIADGIVKGLSQQNMMVDWFADAKLGEMAIHEGVFDAVLLDLTLPRGDGMTI 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R        P++ I+   ++   +   ++G DD + KP    E++AR+ A+ RR +
Sbjct: 64  LANWRQ--QKIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALIRRSQ 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S      G +      +    QG+   L  +E  +LE  ++      ++  +   +YG
Sbjct: 122 GRSQTEIRYGDVSYLPQQQQVFYQGKWVDLTAKEITVLEQFISYPNLVHSRASLEDKLYG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + + +E N +E HI  LRKKL    G D + ++R +GY ++
Sbjct: 182 -WQQDIESNAIEVHIHNLRKKL----GNDFILTRRGIGYYLN 218


>gi|121595458|ref|YP_987354.1| osmolarity response regulator [Acidovorax sp. JS42]
 gi|222111672|ref|YP_002553936.1| osmolarity response regulator [Acidovorax ebreus TPSY]
 gi|120607538|gb|ABM43278.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
 gi|221731116|gb|ACM33936.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 243

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++D        +G  +      +    +      D+  ++  +   GE  L 
Sbjct: 12  LVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLMMP--GEDGLS 69

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA +   P+I ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 70  ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N     GP       R  +  GE  PL   E  +L+ L+ +  + +++ +
Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G  +    +  ++  IS+LRK +  +      + +   +GY  
Sbjct: 190 LALLARGR-EFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|77459846|ref|YP_349353.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77383849|gb|ABA75362.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 224

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 86/222 (38%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +      L      D+  ++  L        
Sbjct: 3   ILVVEDELKAAEYLHQGLTESGYIVDHAVNGADGLHLAQQQVYDLIILDVNLPE--LDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   +R      ++ ++    L   +   D G DD + KP    E+LARV  + RR + 
Sbjct: 61  SVLEQLRRTHSTRVMMLTARGRLADKIRGLDLGADDYLVKPFEFPELLARVRTLMRRSEN 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   + +           +   L  +E  +L  LM   G+ + +TQI S ++ 
Sbjct: 121 IPVPQVLKVADLELDPGRHRAFRGTQRIDLTTKEFALLHLLMRQSGEVLTRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFDSKLIHTLRGVGYVLE 221


>gi|332185060|ref|ZP_08386809.1| response regulator [Sphingomonas sp. S17]
 gi|332014784|gb|EGI56840.1| response regulator [Sphingomonas sp. S17]
          Length = 236

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 98/229 (42%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++        ++G +++  N+           + D+  ++  L   G   +
Sbjct: 6   ILIVEDDPALRTLTARALQENGFAVKLANAAPEMWQALEVGQIDLILLDIMLP--GTSGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           +L R +R  + VP+I IS   S    +   + G DD + KP   RE++AR+ A+ RR  L
Sbjct: 64  DLCRQVRQRNAVPIIFISAKGSEVDRVVGLELGADDYLPKPFSTRELVARIRAVLRRGGL 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ------GEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + +    E G +       +   +      G    L   E  +L   + N  + VA+ ++
Sbjct: 124 ENAPGEREAGILGFDGWTANLPRRELMSPSGAQVELTGAEFDLLVAFLDNAQRVVARERL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              +         +  ++  +S+LR+KL    G  P+ + R +GY ++ 
Sbjct: 184 IE-LSRARIGDSSDRSIDVLVSRLRRKLSGAGGAAPIVTVRGVGYMLNV 231


>gi|304397248|ref|ZP_07379127.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308186446|ref|YP_003930577.1| Response regulator [Pantoea vagans C9-1]
 gi|304355397|gb|EFM19765.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308056956|gb|ADO09128.1| Response regulator [Pantoea vagans C9-1]
          Length = 222

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++       D++ ++  L    E  + 
Sbjct: 4   LVVEDNALLRHHLAVQLRDMGHQVDAAEDAKEADYFLREHLPDIALVDLGLPD--EDGMS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+ + + P++ ++     Q  ++  ++G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  LIRRWRSDAVRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++   +  P +V    R+  V  E   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 HASQIIDMAPFQVDLSRRELTVNEEPVKLTAFEYTIVETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK+      D + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKILALHPTDVIATVRGQGYRFD 221


>gi|257140136|ref|ZP_05588398.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 257

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 13  ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPR--MPGL 70

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 71  DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 130

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 131 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLC- 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 190 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 229


>gi|297560783|ref|YP_003679757.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845231|gb|ADH67251.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 241

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +   A     G +  G    E           D++ ++  L   G   L+
Sbjct: 16  LIVEDEPNILELLTASLELSGFATRGAPDAEAALAALDGFTPDIAVLDVTL--SGRSGLD 73

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   +R     +P++ ++   ++Q  +    +G DD V KP    E++ R+ AI RR   
Sbjct: 74  LAGDLRGVVPGLPVLFLTARDTVQDRVAGLRAGADDYVTKPFSLEEVVLRLNAILRRSGR 133

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +          + +  +G      G    L   E  +L YL+ N GK V+K QI   +
Sbjct: 134 RGSEGAEPLRYADLELDEEGHQVRRAGAPVRLSPTEFALLRYLLLNAGKVVSKAQILDRV 193

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G   E+ +  VVE+++S LR+K+ +      + + R +GYS+
Sbjct: 194 WGG--ESDDIRVVETYVSYLRRKV-DAGRPALIHTVRGVGYSL 233


>gi|322804938|emb|CBZ02497.1| putative two component response regulator transcriptional
           regulatory protein [Clostridium botulinum H04402 065]
          Length = 217

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 94/219 (42%), Gaps = 7/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D+  +++         G  +   +  E       +   D+  ++  L         
Sbjct: 5   LVVEDQIAIRELIAINLEMAGYEVIEASDGEMAVNYIENTYLDIILLDIMLP--KLDGFS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   I +   +P+I ++    +   +     G DD + KP    E+LAR+ A+ RR    
Sbjct: 63  IISKI-SGKGIPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLRRCDKM 121

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               +   + +F   R  + +GE+  +  +E  +L   + N+   +++ QI   ++G +D
Sbjct: 122 EEVIKLNHLNIFPKQRLVKSEGEIIDITLKEYELLMLFIKNKNIALSRDQILERVWG-YD 180

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E   V+ H+ ++R+KL  K   D + +   +GY ++
Sbjct: 181 YFGETRTVDIHVLRIREKLNLK---DCIKTVYKVGYRLE 216


>gi|114567685|ref|YP_754839.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338620|gb|ABI69468.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 223

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +    L   +  +++     E       +   D+  ++  L       L
Sbjct: 3   LLLVEDERQLAEALSELLIKNRYAVDVVYDGEAGLDYALTGIYDLVILDIMLPR--MNGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +    P++ ++    L+  +   DSG DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EILRQLRLNGISSPVMLLTAKGELEDKVSGLDSGADDYLVKPFAAEELLARIRALSRRKG 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + ++  +     +     + E +     L R+E  I+ Y +    + ++K ++   ++
Sbjct: 121 EMIVDDTLDIADFTLNLSTYELEGKNSSVRLTRKEFDIMRYFVYRPNRVLSKDELIEKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   + N +E +IS LRKKL +      + + R +GY ++ 
Sbjct: 181 G-FDSEADYNNIEVYISFLRKKLAHIGSQAAISTLRGIGYKLEV 223


>gi|301155678|emb|CBW15146.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Haemophilus parainfluenzae T3T1]
          Length = 234

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 98/232 (42%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D    +    G  +E  N+ +      +S+ + +  ++  +       +
Sbjct: 4   ILLVDDDIELTDLLAEVLRLTGFEVEIANNGQEALDKLNSSHQ-LVLLDVMMPV--LNGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  S VP++ ++        +   + G DD + KP + RE++AR+ AI RR+  
Sbjct: 61  ETLKKIRQTSNVPVMMLTARGEEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRVSP 120

Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
           S             N  E   + + S  +    +G+   L   E  +L  L+   G+ V+
Sbjct: 121 SESSQNSTALPSEENTLEFCGLVLHSGLQQASYKGQDLGLTGSEFALLHKLVLRPGQIVS 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + ++   + G      +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 REELSMNVLGKHLSPFD-RSIDMHMSNLRKKLPERDNGLPWLKTLRGRGYLL 231


>gi|134294123|ref|YP_001117859.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137280|gb|ABO58394.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 220

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L++D  L+  G       +G +++     +     L+S+    +          G  VL
Sbjct: 4   LLVEDDPLIGSGLEQGLRQEGFAVDWVKDGDAASLALRSTGYGLLLLDLGLPNRDGLSVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
              R  R    +P I I+    +   +   DSG DD + KP    E+LAR+ A+ RR   
Sbjct: 64  AALR--RRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVTRRHAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      GP+R+        +  +   L  +E  +L  LM + G  +++ Q    +Y  
Sbjct: 122 RAQTTLAIGPLRLDPIKHLVWLNDDEVTLSPKEFVLLHELMRDPGAVISREQFEERLY-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + E +E N V+ HI  LRKKL    G D + + R +GY I
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL----GHDMIRTVRGVGYRI 216


>gi|77465102|ref|YP_354605.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77389520|gb|ABA80704.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 219

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G + +    +E      ++   D+  ++  L       L
Sbjct: 3   ILLVEDDPGLGGAIRDQISAEGHAADWMTGVEDALASVATTAYDLVLLDLNLPD--GSGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +  R +RA  +  P+I ++    +   +   ++G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRYA 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + + R   GP+ V    R  +       L +RE  I E L+   G  V+KTQ+   +Y 
Sbjct: 121 GNPSPRLALGPLEVDIADRRIDGPEGEVTLSQREWAIFEALVKRPGSVVSKTQLEETLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD  VE N +E ++S+LRKKL    G D ++++R +GY +
Sbjct: 180 AFDAEVESNTIEVYVSRLRKKL----GRDRIETRRGMGYRL 216


>gi|225569381|ref|ZP_03778406.1| hypothetical protein CLOHYLEM_05465 [Clostridium hylemonae DSM
           15053]
 gi|225161589|gb|EEG74208.1| hypothetical protein CLOHYLEM_05465 [Clostridium hylemonae DSM
           15053]
          Length = 230

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 99/220 (45%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++ G       +G  +   +       L    + D+   +  L       L
Sbjct: 4   ILLLEDDESLRRGISLKLEKEGYDVLCASGSREARRLFDENKTDLIISDITLED--GNGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R IR  S V ++ ++        ++ +D+G DD + KP     ++++V A  RR + 
Sbjct: 62  DFCREIRRVSDVFILFLTALDQEVDIVNGYDTGADDYITKPFSLMVLISKVNAFMRRREH 121

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +           + +        ++GE  PL ++E ++L Y M +  + ++K QI  A++
Sbjct: 122 TGGEGTVLTAPDLTLDCKEMKVFIKGEETPLSKKEMQLLAYFMEHPRQIISKEQILEAVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +  + V++N V  +IS+L+KKL      + + + R +GY
Sbjct: 182 DVDGQFVDDNTVPVNISRLKKKLGGDSETEYIKNIRGIGY 221


>gi|189466516|ref|ZP_03015301.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM
           17393]
 gi|189434780|gb|EDV03765.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM
           17393]
          Length = 229

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G  ++  +S E    +   +   +          G K+ 
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTAHSAEEALKMDIGSYSLLLLDVMMGEISGFKMA 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L +  +  +QVP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR + 
Sbjct: 66  SLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTQQ 125

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +  +     + +    +   + GE  PL ++E  IL  L+ ++G+  ++  I + 
Sbjct: 126 GEQERAPEQISYKTLVIDIVKKKVSIDGEEAPLTKKEFEILLLLLQSKGRVFSREDILAR 185

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+   +  V +  ++ +I++LRKK+   +    + ++   GY  +
Sbjct: 186 IW-SDEVYVLDRTIDVNITRLRKKIG--IYGKCIVTRLGYGYCFE 227


>gi|153939281|ref|YP_001392698.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935177|gb|ABS40675.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295320679|gb|ADG01057.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 96/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  ++   S   EE L     E    I   ++       
Sbjct: 5   ILIVDDDKTIVEFLQIFLIKEGYEVKF--SYNGEEALNKIENEKFDLILMDIMMPKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E  + IR  + +P+I ++   + Q  +  F SG DD + KP    E+  R++AI +R   
Sbjct: 63  EAIKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVST 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++ + +  +   + +           +   L  +E  IL  L  N+G+    ++++  
Sbjct: 123 GVVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSELYER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++G  +    +N + +HI  LR+KL + +     + +   +GY I+
Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIE 227


>gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
 gi|151281395|gb|ABR89805.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
          Length = 227

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +      +  +   D+  ++  L        
Sbjct: 3   ILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDV--DGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R A  QVP++ ++   S+   +   + G D  + KP    E+LA V  + RR  
Sbjct: 61  HIVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRRN 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V   +++ +   + +    R     G+   L  +E  +LE L   RG+ + ++ I S I+
Sbjct: 121 VPAQSDQLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRSLIASQIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +     NV++  I +LR K+        + + R +GY++D
Sbjct: 181 DM-NFDSNTNVIDVAIRRLRAKMDEPYEPKLIHTVRGMGYTLD 222


>gi|153820201|ref|ZP_01972868.1| transcriptional regulator CpxR [Vibrio cholerae NCTC 8457]
 gi|126509256|gb|EAZ71850.1| transcriptional regulator CpxR [Vibrio cholerae NCTC 8457]
          Length = 224

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 10/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   +      +   +G  +   N  E      S    D+  ++  +       +E
Sbjct: 1   LLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSD-EIDLILLDVMMP--KLNGME 57

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
             + +R     P++ ++        +   + G DD + KP   RE+LAR+ AI RR +  
Sbjct: 58  TLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNG 117

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +++  E   I+V+   ++   QG++  L   E  +L + + + G  + K  +   +
Sbjct: 118 LTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIEV 177

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
            G    A +   ++ H+S LRKKL     G   + + R  GY
Sbjct: 178 LGKHLAAFD-RAIDMHVSNLRKKLPERPDGKARIKTLRGRGY 218


>gi|116696499|ref|YP_842075.1| response regulator [Ralstonia eutropha H16]
 gi|113530998|emb|CAJ97345.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 237

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK--- 59
           +L++D A++ D        +G +++     +      S+A+   +  +  L+  G     
Sbjct: 4   LLVEDDAMIGDSVKLALRQEGFTVDWVRDGDAGLAAASTAQHGQACYDLILLDLGLPRRP 63

Query: 60  VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L++ R +RA     P++ ++   ++   +   ++G DD + KP   +E+ AR+ A+ RR
Sbjct: 64  GLDVLRTLRARGVPTPVLILTARDAVADRVAGLNAGADDYLVKPFDLQELAARMHALARR 123

Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G I +    R+   +GE   L  RE  +L  LMA  GK  +  Q+   +
Sbjct: 124 AAGRAEPLVSYGDIVLNPTTREATHRGEPVRLSAREFALLAALMARPGKVWSVPQLQERL 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG +D+ V  N VE +I  LRKK     G   + + R +GY +
Sbjct: 184 YG-WDDEVGSNTVEVYIHALRKK----FGAALIRNIRGVGYVV 221


>gi|22125369|ref|NP_668792.1| response regulator [Yersinia pestis KIM 10]
 gi|45442409|ref|NP_993948.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597048|ref|YP_071239.1| two-component response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108808192|ref|YP_652108.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|108811537|ref|YP_647304.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|145599392|ref|YP_001163468.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|153946864|ref|YP_001400283.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|162418219|ref|YP_001607153.1| DNA-binding response regulator [Yersinia pestis Angola]
 gi|166011234|ref|ZP_02232132.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212492|ref|ZP_02238527.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399427|ref|ZP_02304951.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167424627|ref|ZP_02316380.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186896131|ref|YP_001873243.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|229895670|ref|ZP_04510841.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|229901804|ref|ZP_04516926.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|270489994|ref|ZP_06207068.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504760|ref|YP_003568822.1| response regulator [Yersinia pestis Z176003]
 gi|21958252|gb|AAM85043.1|AE013750_3 putative response regulator [Yersinia pestis KIM 10]
 gi|45437274|gb|AAS62825.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590330|emb|CAH21967.1| putative two-component response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775185|gb|ABG17704.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|108780105|gb|ABG14163.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|145211088|gb|ABP40495.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|152958359|gb|ABS45820.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|162351034|gb|ABX84982.1| DNA-binding response regulator [Yersinia pestis Angola]
 gi|165989912|gb|EDR42213.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206423|gb|EDR50903.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167051931|gb|EDR63339.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056509|gb|EDR66278.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186699157|gb|ACC89786.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681733|gb|EEO77827.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|229701476|gb|EEO89504.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|262362822|gb|ACY59543.1| response regulator [Yersinia pestis D106004]
 gi|262366746|gb|ACY63303.1| response regulator [Yersinia pestis D182038]
 gi|270338498|gb|EFA49275.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355219|gb|ADE65560.1| response regulator [Yersinia pestis Z176003]
 gi|320014434|gb|ADV98005.1| putative two-component response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 235

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A +++G + +   +G       +      L    + D   ++  +        
Sbjct: 3   ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPE--LDGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R IR H  Q P+I +S        +   + G DD ++KP    E+ AR+  I RR L
Sbjct: 61  KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120

Query: 120 KVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +     AE      G + VF +            L  RE  IL YL  ++G+ V +  +F
Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVVTRDMLF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            A++G +D   +   ++ HISKLRK +  + +    + +    GY 
Sbjct: 181 DAVWG-YDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYR 225


>gi|108759259|ref|YP_632949.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
 gi|108463139|gb|ABF88324.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
          Length = 229

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   + +         G++    ++ E           D+  ++  L       ++
Sbjct: 5   LIIDDERDLAELIDFNLRGSGLTTHVSHTGEEALVAAREQNPDLVLLDLMLPD--MSGID 62

Query: 63  LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           + R +RA  Q   V ++ ++        +  F+ G DD V KP   RE++ R+ AI RR 
Sbjct: 63  VCRQLRASPQSRGVLIVMLTAKGEESDRIRGFEVGADDYVVKPFSVRELVLRLKAILRRG 122

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                       GP+R+        V+     L   E R+LE+L+A  G+   + Q+   
Sbjct: 123 APTAGGTAPLALGPLRLDVASHRFFVEDREVALTALEFRLLEHLLARLGRVQTREQLLEE 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++GL   ++E   +++H+ +LR KL        +++ R +GY +
Sbjct: 183 VWGLS-SSLETRTIDTHVMRLRDKLGPARA--LLETVRGVGYRM 223


>gi|258515194|ref|YP_003191416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778899|gb|ACV62793.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 236

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 16/235 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V +         G  +           L  S   D+  ++  +   G    
Sbjct: 4   ILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMP--GLDGY 61

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R+++   A  ++P+I +S        +   + G DD + KP   RE++ARV A  RR
Sbjct: 62  SICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRR 121

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    + S N    G + +  +    E+ G+   L  +E  +L +L    GK  ++
Sbjct: 122 DKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS-IDWN 223
             +    +  FD + +   V+ HI ++R+KL         +++ R +GY  I+ N
Sbjct: 182 YFLLKQFW-EFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFIETN 235


>gi|187934520|ref|YP_001884517.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722673|gb|ACD23894.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 230

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D         G +L+ F + +  E L+    E +  I   ++      + 
Sbjct: 5   LVVDDEKEIRDAIEIYLR--GENLKVFKAADGLEALEILNNEKIHVIVLDIMMPKLDGIR 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR    +P+I +S        +   + G DD + KP +H E++ARV +  RR    
Sbjct: 63  TCLKIRETENLPIIMLSAKGEDSDKILGLNVGADDYIIKPFNHLELVARVKSQLRRYDKP 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +          + + +  +   V+GE   +   E +IL  L +N GK  +  +I+  
Sbjct: 123 LNIEDEEQVLTVKDLVIDTVSKSIIVRGEEIKVTATEYKILHLLASNLGKVFSIKEIYEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++        EN V  HI ++R+K+  N    + +     +GY I+
Sbjct: 183 VWDEP-FYKSENTVTVHIRRIREKIEINTKEPEYIKVVWGIGYKIE 227


>gi|113868143|ref|YP_726632.1| response regulator [Ralstonia eutropha H16]
 gi|113526919|emb|CAJ93264.1| response regulator involved in heavy metal response, OmpR-family
           [Ralstonia eutropha H16]
          Length = 227

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D       ++G  ++  ++      L  +   D   ++  L       +
Sbjct: 3   LLLVEDEIKTVDYLRRGLSENGYVVDTAHNGVDGLHLACTEPYDAIVLDVMLPA--LDGV 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R   Q P++ ++    L   L+ FD+G DD ++KP    E+LAR+  + RR + 
Sbjct: 61  SVLKSLRREQQTPVLMLTARDDLDDRLNAFDAGADDYLSKPFSFLELLARLNVLTRRGRQ 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  ++   G +R+    R          L  RE  +L  L   + + V+KT I   ++ +
Sbjct: 121 TEPSQLTVGDLRIDLLSRRATRGTRRLELSAREFTLLSVLARRQAQIVSKTAITELVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
                  NVVE  + +LR KL        + + R +GY ++
Sbjct: 181 S-FDCNTNVVEVAVKRLRAKLDWPGEAKLLHTIRGMGYVLE 220


>gi|330962432|gb|EGH62692.1| DNA-binding response regulator [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 227

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 7/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+ +G IA  G  G ++E   +    E +  +AR +V  ++  L  K    L 
Sbjct: 4   LLVEDDKLIAEGVIAGLGAQGFNVEHVINAAGAEAMLLAARFEVMILDLGLPDKDGLTLL 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
                R+   +P++ ++   S+   +    +G DD + KP   RE+ AR+  ++RR L  
Sbjct: 64  RLLRERSF-HLPVLILTARDSIADRVAGLQAGGDDYLLKPFDLRELAARLHTLHRRFLGR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S N  + G + +    R+  + GE   L RRE+ +L+ L+ ++G+ V+  Q+  A+YG  
Sbjct: 123 STNLIQHGSLGIDPTTRETFLAGEPIDLSRREQSLLKALLDSKGRIVSADQLKDAVYGFA 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D+ VE N +  HI  LR+KL    G + V + R LGY I
Sbjct: 183 DD-VESNALNVHIHNLRRKL----GNNIVHTVRGLGYRI 216


>gi|329930448|ref|ZP_08283988.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328934826|gb|EGG31316.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 228

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   V +        +G  +    +          A+  +  ++  L       +
Sbjct: 5   LLLVDDERKVIEFMEPFLRQEGFHIITAATGTEALAKARDAKPALVVLDWMLPE--LSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R  S+V +I ++        L   + G DD + KP   RE+ AR+ ++ RR++ 
Sbjct: 63  EVCRELRKSSRVGIIMVTARIEETDKLIGLEVGADDYMTKPFSLRELAARIRSVLRRIEG 122

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V+    + G + +               L   E ++L  L +  G   ++ Q+  A  
Sbjct: 123 ESVTEEMLKRGDLTISETQCRVWKHDREILLTPTEFKLLLTLASRPGVVYSRLQLLQAAM 182

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              D   +E   ++HIS++RKK+  +      + +    GY  +
Sbjct: 183 -EDDIHNDERTADAHISRIRKKIEEDPAEPVFIKTVYGFGYRFE 225


>gi|295704021|ref|YP_003597096.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801680|gb|ADF38746.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 226

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD A + D        +G +   F    E   +L    + D+  ++  +    E  
Sbjct: 4   ILLVDDEARMLDLLELYLLPNGFTCIKFERGTEALRYLYEGNKADLMLLDIMMPS--EDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + +R  S +P+I ++        +   + G DD + KP    E++AR++A+ RR  
Sbjct: 62  WEICQKVRKMSDLPVIMLTARSQTLDVVKGLNMGADDYITKPFSEEELVARISAVLRRSL 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N      +    +    + + +   +  +E  ++  L+ +  +  ++  +   ++G 
Sbjct: 122 KEKNEITYKGLVWSKEDHVLQYKNQYIQVTPKEFELVGLLLQHLNRVFSRDDLLVLVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           ++  + +  ++SH+  +R KLR       + + +   +GY 
Sbjct: 181 YEAEIGDRTIDSHVRNVRDKLRKAGFPVDEYLQTVWGIGYK 221


>gi|257867146|ref|ZP_05646799.1| two-component system response regulator [Enterococcus casseliflavus
           EC30]
 gi|257873480|ref|ZP_05653133.1| two-component system response regulator [Enterococcus casseliflavus
           EC10]
 gi|257801202|gb|EEV30132.1| two-component system response regulator [Enterococcus casseliflavus
           EC30]
 gi|257807644|gb|EEV36466.1| two-component system response regulator [Enterococcus casseliflavus
           EC10]
          Length = 235

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59
            +L++D   +          +G         +    L  Q +   D+  ++  L      
Sbjct: 5   ILLVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQANAFDLILLDWMLPI--YD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            + + R IR  S +P++ ++        +   D G+DD + KP    E+ AR+  I RRL
Sbjct: 63  GITVARRIRKESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 122

Query: 120 KVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +          N+   G + +       +V GE   L  +E  IL  LM        +  
Sbjct: 123 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + I+G ++   + NVV+ +I  LR KL        + + R LGY +
Sbjct: 183 LLNEIWG-YEYDGQTNVVDVYIRTLRNKLDVCGKGKMIATVRGLGYVL 229


>gi|257464655|ref|ZP_05629026.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Actinobacillus minor 202]
 gi|257450315|gb|EEV24358.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Actinobacillus minor 202]
          Length = 232

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 97/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   +         +    +  ++  L        
Sbjct: 3   ILVVEDEIKAGDYLKQGLSEAGFMVDIARNGVDGLHFALTEDYQLIILDVMLP--KLDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +++R A  + P++ ++    ++  +  F+ G DD + KP    E+LARV  + RR+ 
Sbjct: 61  QVLQMLRQAEKKFPILLLTAKDQVEDKVKGFELGADDYLVKPFAFAELLARVRTLLRRIP 120

Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +T  +++         R     G    L  +E  +LE L+  +G+ + +  I S
Sbjct: 121 NEEKKIQTTSLKIADLELDLLKRKVSRAGHRIDLTSKEFALLELLIQRQGEVLPRMLIAS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + +   + NV++  I +LR K+ +      + + R +GY +D
Sbjct: 181 HVWDM-NFDSDTNVIDVAIRRLRNKIDDSYTPKLIHTVRGVGYVLD 225


>gi|227889700|ref|ZP_04007505.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227849745|gb|EEJ59831.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 225

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
              ++D   +++  +         + GF        +  + R D+  ++  L    E   
Sbjct: 4   IWCVEDDESIREIEMYTLEAMNFKVRGFEDGHSFFKVLDNNRPDLVILDLMLPD--EDGS 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   ++  S    +P+I  S   +    +   DSG DD + KP    E+++RV A+ RR
Sbjct: 62  EILHRLKYTSATEDLPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRR 121

Query: 119 L-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   ++ E   I++     +         L  +E  +L+ L+ + G   ++ +I   I
Sbjct: 122 TNRKKEDKIEKDGIKILLKRHEVFENSRQVDLTLKEYGLLKLLITHPGTVFSREEIMDQI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +      VE   V+ H+  LR+KL        +++ R +GY 
Sbjct: 182 WETG-FYVETRTVDVHVRTLRQKLGEAG--KYIETLRGVGYR 220


>gi|256042377|ref|XP_002569366.1| sensor histidine kinase/response regulator [Schistosoma mansoni]
 gi|227277727|emb|CAY18622.1| two-component system sensor histidine kinase/response regulator
           (intestinal bacteria-bacteroides thetaiotaomicron),
           putative [Schistosoma mansoni]
          Length = 235

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +           G  +    SL     L      D   ++  L       L
Sbjct: 8   ILLIDDDMRLSAMVADYLRSHGYQVSTAASLTAGRELLGRQAMDALVLDLMLPD--GDGL 65

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R +RA  +    P++ +S        +   + G DD + KP   RE++AR+  + RR
Sbjct: 66  DLCRELRASPRTRSLPVLMLSARGEPTDRIVGLEVGADDYLPKPFEPRELVARLQTVLRR 125

Query: 119 LK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +     V+    E   + + +  R  +  GEV  L   E  +L  L    G+  ++  I
Sbjct: 126 RRAPGPGVATGSLEFEGLSIDAARRSVQRHGEVVELTGTEFDLLHLLAREPGRVFSRDDI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + G  +  +    V+  +S+LRKKL      D + + R +GYS+
Sbjct: 186 LNQLRG-HEAELYTRAVDIVVSRLRKKLEP---LDCIKTLRNVGYSL 228


>gi|255656708|ref|ZP_05402117.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452468|ref|ZP_06894168.1| response regulator [Clostridium difficile NAP08]
 gi|296877817|ref|ZP_06901842.1| response regulator [Clostridium difficile NAP07]
 gi|296258700|gb|EFH05595.1| response regulator [Clostridium difficile NAP08]
 gi|296431189|gb|EFH17011.1| response regulator [Clostridium difficile NAP07]
          Length = 234

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++    L   +G  +    + E    L  S   D+  ++  +  K     
Sbjct: 9   ILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLADST-IDLIILDVVMPVK--TGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  +  P++ ++        +  F +G DD ++KP  + E+++RV ++ RR   
Sbjct: 66  VACSEIREKTTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRRYYI 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   N  +T  + V  D +D  + G+   L   E  IL  ++ NR K  +   +
Sbjct: 126 YQGKEKEKEPNILKTKELCVNLDTQDVTLNGQPVFLTTIEYSILVLMLKNRKKVFSSENL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+         N +  HI  LRKKL  ++     + +    GY ID
Sbjct: 186 YETIWDEQYFYTANNTIMVHIRNLRKKLEKDQKNPQYIKTAWGKGYYID 234


>gi|221069766|ref|ZP_03545871.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714789|gb|EED70157.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 225

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG +      G  +    N  E +  L +S+  D+  ++  L       
Sbjct: 3   ILIAEDDQVLADGLLRTLRSSGAVVSHVANGSEADTALLTSSEFDLLILDLGLPKV--HG 60

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +R     +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 61  LEVLKRLRGRGDALPVLILTAADSIEERVQGLDYGADDYMAKPFALSELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI- 177
           +  +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGGASSTIKHGPLVYDQTGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 178 -YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +G   E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 EWG---EEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220


>gi|169836123|ref|ZP_02869311.1| two-component response regulator [candidate division TM7
           single-cell isolate TM7a]
          Length = 520

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +  +++  D G        +++           D + ++  L       
Sbjct: 11  ILIVDDEQEILNMVVSILADGGYKNTRTARNVKEALKCAKEVEPDFAILDVMLPD--GNG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   +R +S  P++ ++     +     F  G DD + KP   +E+L R+ AI RR  
Sbjct: 69  FELLEKLRKNSDYPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTY 128

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N        ++     +    GE   L  +E  +L+ L  N G+ V    +  AI+G
Sbjct: 129 KEENFIVNLNGCQIDFSRGEIVKDGEKISLTAKEYELLKTLYRNAGRIVTIDSLCEAIWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
             +  V  N + +HI ++R+K+  +      + + + LGY +
Sbjct: 189 E-NAYVYSNSLMTHIRRIREKIEKEPSHPVSLITMKGLGYKL 229


>gi|306820883|ref|ZP_07454503.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550997|gb|EFM38968.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 233

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 101/231 (43%), Gaps = 11/231 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            ++++D   ++         +G  +    S E    L    ++ +++ ++  L G     
Sbjct: 3   ILVLEDEFSIRSFVTLNLKREGYDVIEAGSGEEAIELYDKNQDINIAVLDVMLPGS-IDG 61

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            ++ + IR  S  + +I ++   + +  +   + G DD +NKP   +E++AR+ A+ RR+
Sbjct: 62  FDVLKHIRTRSQNIGIIMLTARTNEEDKVLGLEYGADDYINKPFSPKELIARIRALIRRV 121

Query: 120 KVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +       +  +G   +    R      E   L  +E  ILE  M N+GK +++ +I
Sbjct: 122 TSIDMVKEEVEKVHSGEFTLNFSERKFFKGEEEIELTPKEFEILELFMKNKGKSLSRDEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
              I+G  +   +  VV+ +I ++R K+  +      + +    GY  + +
Sbjct: 182 LDRIWGK-NYYGDLKVVDVNIRRIRMKIEKDSSNPSYLKTVWGYGYRWEED 231


>gi|302553272|ref|ZP_07305614.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470890|gb|EFL33983.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 240

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 20/235 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   +++        +G  +                R DV  ++  +   G   L+
Sbjct: 6   LLAEDDRAIRNALERALTLEGYQVMAVADGVEALAQAHRNRPDVLVLDVMMP--GIDGLQ 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++RA     P++ ++        +   D+G DD V KP    E+ AR+ A+ RR   
Sbjct: 64  VCRVLRAEGDRTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSP 123

Query: 122 ----------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165
                                E   IR+    R          L R E  +LE L+ N G
Sbjct: 124 VAAGSAPAAEEAPKAAPGRFLEAAGIRMDPQARRAWRGERELELTRTEFELLELLVRNAG 183

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +  + I+  I+G +D       +  ++  LR+KL        + + R +GY +
Sbjct: 184 IVLDHSTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDEPGAPLLIHTVRGVGYVL 237


>gi|289423154|ref|ZP_06424969.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
 gi|289156485|gb|EFD05135.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
          Length = 231

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 108/233 (46%), Gaps = 20/233 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   + +        +G  +    +SL+  + ++   + D+  ++  L       
Sbjct: 4   ILIIDDEEHILELLDFNLSLEGYEVITTMSSLDGLDIIKQD-KPDLVLLDWMLP--KMSG 60

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           +EL  IIR+   +  + +I ++     +  L+    G DD V KP   +E+ ARV  I +
Sbjct: 61  IELLNIIRSDEDYDDIAVIMLTAKNMEEDKLEGLTIGADDYVTKPFSIKELSARVKNILK 120

Query: 118 RL----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           R           K+ +N+ + G + +  D  +  ++  +  L  +E  IL+ L+ N+G+ 
Sbjct: 121 RYNKQDSNNKTNKIGSNKLKAGDLILELDRHEVYLRDRLIDLTVKEYGILKLLLENKGRV 180

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++  I   I+G +D   E   V+ HI  LRKKL      + +D+ R LGY I
Sbjct: 181 ISREYILEKIWG-YDYFGETRTVDVHIRYLRKKLGED--ENFIDTIRGLGYKI 230


>gi|237654696|ref|YP_002891010.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|237625943|gb|ACR02633.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
          Length = 226

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D     D       + G  ++          L  S   D+  ++  L    G  +
Sbjct: 3   ILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALSGDYDLIVLDVMLPSLDGWAI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R  R+  + P++ ++    ++  +   + G DD + KP    E LARV  + RR +
Sbjct: 63  LQTLR--RSGRENPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSEFLARVRTLLRRGR 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +   +  + +    R     G+   L  +E  +LE L+  +G+ + ++ I S ++ 
Sbjct: 121 SHEPDTLRSANLELDLLRRRVTRCGQRIDLTAKEFALLELLLRRKGEVLPRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDSDTNVIEVAVRRLRVKVDDPFEPKLIRTVRGMGYVLE 221


>gi|126437133|ref|YP_001072824.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126236933|gb|ABO00334.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 248

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +        +      +      DV  ++  L   G   LE
Sbjct: 18  LVVDDELPLAEVVASYLEREQFEAVVAGNGVDAIAVARDLDPDVVILDLGLP--GIDGLE 75

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD + KP   RE++AR+ A+ RR ++ 
Sbjct: 76  VCRQLRTFSDAYVVMLTARDTELDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRIL 135

Query: 123 NNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              A             G + +    R+  +  E+  L R E  ILE L A  G  +++ 
Sbjct: 136 QTAAAPAERETAPPRRFGALSIDVAAREVHIDDELILLTRTEFDILEALSARPGIVLSRR 195

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+   I         E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 196 QLLEIIRDEP-WVGNEHLVDVHIGHLRRKLGDDAARPRYIATVRGVGYRM 244


>gi|260577913|ref|ZP_05845843.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603933|gb|EEW17180.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 228

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                     D+  ++  L   G   +
Sbjct: 8   ILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVMLP--GMNGI 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR  S VP++ ++        +   +SG DD V+KP   +E++ARV A  RR   
Sbjct: 66  DVCKAIRETSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKELVARVRARLRRTPE 125

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E   +++   G      G+   L   E  +L  L +   +  ++ ++   ++G
Sbjct: 126 EAPAETIEVVDLKIDVPGHQVIRDGQEIALTPIEFDLLVTLASRPRQVFSREELLEQVWG 185

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
            + ++ +  +V  HI +LR K+ R+      + + R +GY 
Sbjct: 186 -YRKSSDTRLVNVHIQRLRSKVERDPDDPKIIQTVRGIGYK 225


>gi|209523923|ref|ZP_03272475.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209495595|gb|EDZ95898.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 236

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 89/225 (39%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +E     E    L      D+  ++  L        
Sbjct: 6   ILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNLPDT--TGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + ++  ++V ++ ++        +  F+ G DD + KP    E+ ARV AI +R + 
Sbjct: 64  ALCQEMQDRTRVFVLLLTSLTGEADKIKGFELGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +        G + +    R+  +      L   E  +L  L    G+   ++++   +
Sbjct: 124 VEDTEMRSLTYGDLVIDPVRREVYISDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +  ++   E+ VV+ HI ++RKK+         + + R +GY  D
Sbjct: 184 WD-YEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFD 227


>gi|120403287|ref|YP_953116.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956105|gb|ABM13110.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 255

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   + +        +G  ++  +          +   D+  ++  L       L 
Sbjct: 33  LLVDDERALTNLVKMALQYEGWEIDVAHDAAEAVDKYRANTPDLLVLDIMLPD--MDGLG 90

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +   +R      P + ++   S+   +    +G DD + KP    E++AR+  + RR   
Sbjct: 91  VLARLRESGAYTPTLFLTARDSVADRVTGLTAGGDDYMTKPFSLEELVARLRGLLRRSAY 150

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G + + +  R+    GE   L   E  +L  LM N+ K +++T I   +
Sbjct: 151 LAPADDESLSVGDLTLDAASREVTRAGEPVSLTSTEFELLRLLMRNQRKALSRTDILRKV 210

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +  +D     ++V+ ++S LRKK+    G DP + + R +GY +
Sbjct: 211 WD-YDFGGRTSIVDLYVSYLRKKIDA--GRDPMIHTVRGVGYML 251


>gi|88860719|ref|ZP_01135356.1| DNA-binding response regulator BaeR [Pseudoalteromonas tunicata D2]
 gi|88817314|gb|EAR27132.1| DNA-binding response regulator BaeR [Pseudoalteromonas tunicata D2]
          Length = 227

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    +     DG  +   +          + + D   ++  L  K    L 
Sbjct: 6   LVVEDEVKIAQILVDFLTLDGFEVTTIHDGADAVLQIKNQQPDFVILDLMLPNK--DGLT 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + +R  S VP++ ++        L   + G DD V KP   RE++ARV  I RR  V 
Sbjct: 64  ICKEVRQFSNVPILMLTARVDEIDRLMGLEFGADDYVCKPFLPREVVARVKTILRRTAVI 123

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   I +       ++ G    L   E R+L  L+   G   ++  +   
Sbjct: 124 PATANDEEVTKYKVILLNLSRFQCQIAGVEVELTPVEFRLLNTLITRPGIVHSRDSLMQV 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            Y L D  V    ++SHI  LR KL  +     + S   +GY I+
Sbjct: 184 CY-LDDRIVSARTIDSHIKNLRNKLSQQGQEALLHSIYGIGYKIE 227


>gi|37675773|ref|NP_936169.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
 gi|37200312|dbj|BAC96139.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
          Length = 218

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+    +      G +++     +      +   ED +A+   L       L
Sbjct: 3   LLLIEDDTLLGQSMVTSLSRHGYTVDWLE--KGSGVTSALKTEDFTAVILDLTLPDIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R IR A   +P++ ++    ++  +   D G DD + KP    E+LAR+  + RR  
Sbjct: 61  DVLRNIRSAGFNLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G + +    +    Q  V  L R E +IL  LM N G+ ++K Q+  +++G
Sbjct: 121 GSATEVIEVGELNLSLSDQSIRYQEAVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLHG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D++  +N +E HI  LRKK        P+ + R +GY I+
Sbjct: 181 -WDDSASDNAIEVHIHNLRKK----APNVPIKNIRGVGYIIE 217


>gi|261211256|ref|ZP_05925545.1| transcriptional regulator CpxR [Vibrio sp. RC341]
 gi|260839757|gb|EEX66368.1| transcriptional regulator CpxR [Vibrio sp. RC341]
          Length = 228

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      S    D+  ++  +       +
Sbjct: 4   ILLIDDDTELTSLLTEVLQYEGFDISEANDGEAGLAAVSD-EVDLILLDVMMP--KLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R     P++ ++        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 61  ETLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQN 120

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     ++  E   ++V+   ++   QG++  L   E  +L + + + G+ + K  +   
Sbjct: 121 ALPPKNSDVIECQDLQVYPGKQEAYCQGQLLDLTTTEFALLTHFVQSPGETLTKEMLSVE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           + G    A +   ++ H+S LRKKL   + G   + + R  GY
Sbjct: 181 VLGKRLAAFD-RAIDMHVSNLRKKLPERQDGKARIKTLRGRGY 222


>gi|221200151|ref|ZP_03573194.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221206696|ref|ZP_03579708.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221173351|gb|EEE05786.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221180390|gb|EEE12794.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 252

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLP--KMSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 180 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRIATVRGLGYCLE 219


>gi|161523829|ref|YP_001578841.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351409|ref|YP_001947037.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221211333|ref|ZP_03584312.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|160341258|gb|ABX14344.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189335431|dbj|BAG44501.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221168694|gb|EEE01162.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
          Length = 252

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLP--KMSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 180 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRIATVRGLGYCLE 219


>gi|251789546|ref|YP_003004267.1| DNA-binding transcriptional regulator PhoP [Dickeya zeae Ech1591]
 gi|27526279|emb|CAD33237.1| PhoP protein [Erwinia chrysanthemi]
 gi|247538167|gb|ACT06788.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 222

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++     +  ++       D++ ++  L    E   
Sbjct: 3   ILVVEDNVLLRHHLNVQLNEMGHQVDAAADAKEADYFLQEHAPDIAIVDLGLPI--EDGT 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R+H  ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRWRSHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  V    R+  V GE   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIISLPPFEVDLSRRELLVHGEAVKLTAFEYTIIETLIRNNGKVVSKESLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKKL++    D + + R  GY  D
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQSANSHDVITTVRGQGYRFD 221


>gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 234

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   ++         +G  +   +              DV  ++  +   G   ++
Sbjct: 6   LLAEDDRAIRHALERALTLEGYRVTSVSDGVEALAAIHREHPDVIVLDVMMP--GVDGIQ 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R++RA     P++ ++        ++  D+G DD V KP    E+ AR+ A+ RR+  
Sbjct: 64  VCRVLRAEGDRTPILMLTARVETADRIEGLDAGADDYVAKPFDVEEVFARLRALLRRVAP 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    V +       +R+    R     G    L R E  +LE L  N G  +   
Sbjct: 124 VPEPTTEGTVFDATLAVADLRLDPSARRVWRGGTELELTRTEFDLLELLARNAGIVLDHG 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I+S I+G +D       +  +I  LR+K+        + + R +GY++
Sbjct: 184 TIYSRIWG-YDFGPGSKNLAVYIGYLRRKVDQTGLTPLIHTVRGVGYTL 231


>gi|296131168|ref|YP_003638418.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296022983|gb|ADG76219.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 258

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A + D        +G   +   +         +   D+  ++  L  +    LE
Sbjct: 25  LVVDDEAFLADFVATALRYEGFETQTAGTSAQAVASAQTFDPDLVVLDVMLPDR--SGLE 82

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +R      P++ ++   +    +     G DD V KP    E++ RV A+ RR  V
Sbjct: 83  TCRELRRLGLDAPVVFLTARDAQADRIAGLTVGGDDYVTKPFSLDELVLRVRAVLRRTGV 142

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +     +      + V          GE+  L   E ++L Y  AN G+ ++K QI   
Sbjct: 143 PSPDADGDVLRFADLEVDVAAHAARRAGELIDLTPTEFKLLRYFTANAGRVLSKRQILDH 202

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D    + VV++++S LR+K+ +      + +   +GY +
Sbjct: 203 VW-EYDFNGNDGVVQTYVSYLRRKV-DVYPPPLIHTIPRVGYVM 244


>gi|164688779|ref|ZP_02212807.1| hypothetical protein CLOBAR_02426 [Clostridium bartlettii DSM
           16795]
 gi|164602255|gb|EDQ95720.1| hypothetical protein CLOBAR_02426 [Clostridium bartlettii DSM
           16795]
          Length = 216

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 95/220 (43%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++D         G  +         E    + + D+  ++  +   G    
Sbjct: 3   ILVVEDEAPIRDLISINLQLVGYEVFTAEDGIIAEKFLENQKVDLILLDVMIP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I+ H   P+I ++   S+   +     G +D + KP    E+LARV  + RR   
Sbjct: 61  SLIEKIKKH-NTPVIFVTAKESVLDRVKGLRLGAEDYIIKPFETIELLARVEVVLRRYNK 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    +   I V ++ R   +  +   L  +E  +L  L+ N+ + +++ QI   ++  F
Sbjct: 120 NKQTIKFKNIEVDTEQRIVNLNNKEVYLTVKEYELLVLLLQNKNRALSRDQILERVW-RF 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   E   V+ HI ++R+KL  K   + + +   +GY ++
Sbjct: 179 EYGGETRTVDIHIQRIREKLDLK---NNIKTVFKVGYRLE 215


>gi|225155322|ref|ZP_03723815.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224803929|gb|EEG22159.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 242

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 99/238 (41%), Gaps = 22/238 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D  +     +G   +   +    E  ++  RE  + +   +        
Sbjct: 5   ILIIEDEPAIADTLLYSLASEGFRPQWRATGR--EGREALERETFALVILDVGLPDISGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L + IR  S VP++ ++   +    +   + G DD V KP   RE+ ARV AI RR   
Sbjct: 63  ALCQEIRRCSSVPILFLTARNNEIDRVVGLEMGGDDYVAKPFSPREVAARVRAILRRGPA 122

Query: 121 VSNNRAETG----------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
           V+N  A+ G                   V               L R E R+ + L++  
Sbjct: 123 VTNANADAGVTVNTNASAKPHDNGQRFTVDDTRFQIRFLDTPLDLTRIEFRLFKVLLSQP 182

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDP-VDSKRFLGYSI 220
           G+  ++ Q+ +A +   + +++   V++H+  +R KLR      DP + + R LGYS+
Sbjct: 183 GRVFSREQLLTAAWDEPEASLD-RTVDAHVKTIRAKLRAVTNEADPIIQTHRGLGYSL 239


>gi|154484426|ref|ZP_02026874.1| hypothetical protein EUBVEN_02139 [Eubacterium ventriosum ATCC
           27560]
 gi|149734903|gb|EDM50820.1| hypothetical protein EUBVEN_02139 [Eubacterium ventriosum ATCC
           27560]
 gi|291551280|emb|CBL27542.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 220

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++  +   G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSN-PLKINMEELHRYDLILLDIMMP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR     P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRILVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +  PL + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    ++ + +HI  +R K  +   + P+ +   +GY  +
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWE 219


>gi|113952823|ref|YP_729925.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113880174|gb|ABI45132.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 240

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 15/233 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED--VSAIEAFLIGKGEKV 60
           +L DD   +          +G ++    + +    L+     D  V          G   
Sbjct: 9   LLADDEVNIVTLLEMELQAEGFTV--VTATDGISALKKLREPDTPVDLALLDWNMAGITG 66

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L++ R +R     +P+I ++    +   +   ++G DD ++KP + RE+LARV A+ RR 
Sbjct: 67  LDICRRLRETDVSLPVIIMTSRDEIDDRIAALETGADDFISKPFNVREVLARVKALIRRA 126

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    + S++  E G + +    R   + G    L  RE  +L+  M +  + +++
Sbjct: 127 TFCKSTFSNEFSSDLLEIGKLALNRAERTCTINGTALILTVREFDLLDCFMRHPRQALSR 186

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            Q+   ++G  D   +ENVV+  +  LRKKL        + + R +G+++  N
Sbjct: 187 GQLIQHVWG-DDYFGDENVVDVFVRYLRKKLEAGGSERVIQTVRGVGFALRMN 238


>gi|84387151|ref|ZP_00990173.1| probable two-component system response regulator (Pho family)
           [Vibrio splendidus 12B01]
 gi|84378012|gb|EAP94873.1| probable two-component system response regulator (Pho family)
           [Vibrio splendidus 12B01]
          Length = 224

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +    +  F  +G+++              +   DV  ++  L  K     
Sbjct: 3   ILLIEDDIHIARFLVNGFQQEGITVTHATDGVDGLHEAVTEEYDVIILDIMLPKK--DGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P+I +S   S++  +    SG DD + KP    E+LAR   + RR K
Sbjct: 61  EVLAELRGQGYATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLVRRGK 120

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      GP+ +       +   +   + +RE  +++ L+ NR   ++KT I   +
Sbjct: 121 QPTPQPLELHYGPLSLDLLKHTLQRDQQTITINQREFMLMKLLLENREAVMSKTAILEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G      + NVV+  + +LR K+        + + R +GY +
Sbjct: 181 WG-HQFDPQTNVVDVLVCRLRSKVDKGFSKPLIHTLRGVGYVL 222


>gi|312134258|ref|YP_004001596.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311774309|gb|ADQ03796.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 217

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +LI+D   ++         +G  + E  +  E  E  Q S    V  ++  L  K    
Sbjct: 3   ILLIEDEEKLRKIIKLYLEKEGFEVKEASDGNEAIEKFQPSM-YSVVILDVMLPQK--DG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R IR     P+I ++        +  F+ G DD V KP+  +EI+ARV AI +R K
Sbjct: 60  WSVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRSK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++      + +    R+  V+G+   L ++E  +L YL   +   +++ QI ++++G 
Sbjct: 120 KSSSD---EILFIDKAAREVYVKGQKLNLTQKEYELLLYLYERQNIALSREQILNSVWG- 175

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           ++   +   V++HI  LR+KL      D + + R  GY  + 
Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGEL--RDYIKTVRGYGYKFEV 215


>gi|307244490|ref|ZP_07526599.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492183|gb|EFM64227.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 237

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 18/234 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D       + G  +  F +    E L+   +ED+      ++       
Sbjct: 6   ILVVDDEKEIADVVEIYLLNQGYKV--FKANNGLEGLKIVDKEDIHLAIIDMMMPVMDGA 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S        +   + G DD VNKP    E+LARV +  RR   
Sbjct: 64  SMIMKLREKHNFPVIILSAKSEEVDQIMGLNIGADDYVNKPFKPLELLARVNSQLRRYTK 123

Query: 122 SNNRAE-------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
             N ++              G + +  + R   V  +   +   E +IL  LM N G+  
Sbjct: 124 YMNISDDEDGEKEDEGLYIIGGLELNENKRTVSVDDKPVKITPIEFKILNLLMKNPGRVF 183

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  +I+  ++   + A+  + V  HI  +R+K+  +      +     +GY ID
Sbjct: 184 SSEEIYEKVWN--ENAINTDTVMVHIRNIREKIELDSKKPKYLKVVWGVGYKID 235


>gi|289568536|ref|ZP_06448763.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
           tcrA [Mycobacterium tuberculosis T17]
 gi|289542290|gb|EFD45938.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
           tcrA [Mycobacterium tuberculosis T17]
          Length = 237

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 83/215 (38%), Gaps = 5/215 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G +++                 D   ++  L   G    
Sbjct: 25  ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLP--GIDGF 82

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+  R+ R     P++ ++   ++   +   D G DD + KP +  E+ AR+ A+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G +R+               L  +E  +LE L+   G    + Q+    + 
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
              EA   N+V+ +I  LR K+    G   +++ R
Sbjct: 203 AAYEAR-SNIVDVYIRYLRDKIDRPFGVTSLETIR 236


>gi|264680342|ref|YP_003280252.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299532693|ref|ZP_07046081.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262210858|gb|ACY34956.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298719328|gb|EFI60297.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 239

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 21/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +V  G      D G +++   S E    + +    DV+ I+  L   G   L
Sbjct: 3   LLLVEDDVMVASGIKLGLSDAGYAVDWVGSAERALEVLAQEAFDVAVIDIGLP--GINGL 60

Query: 62  ELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           EL R +R        +P++ ++   +LQ  +   D G DD + KP    E+LAR+ A+ R
Sbjct: 61  ELTRRLRSSDVESKAMPVLILTARDALQDRVQGLDWGADDYMVKPFELPELLARLRALMR 120

Query: 118 RLKVSNN-RAETGPIRVFSDGRDP---------EVQGE--VFPLPRRERRILEYLMANRG 165
           R + + +     G I + + GR           E +G+     L  RE  +LEYL+ N  
Sbjct: 121 RSQAATSAVLNFGCIELDTAGRRAGARQLPQEGETEGKLLPIDLGPREWTVLEYLLLNAP 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           K  +K ++  A+ G +D  +  N VE ++S+LR KL        + S R  GY ++
Sbjct: 181 KPASKEKLLQALTG-WDREITPNAVEVYVSRLRSKLEPHG--VALRSIRGFGYRLE 233


>gi|218778176|ref|YP_002429494.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759560|gb|ACL02026.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 235

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G + +F  +G + +G    +       S + D+  ++  L        
Sbjct: 8   ILLVEDDPAISRGLLDVFVFNGFAAKGVEDGKQGLDEALSGQYDLVILDVMLPS--LDGF 65

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A     +I ++   S    +  F +G DD V+KP   +E++ RV A+ RR  
Sbjct: 66  SICRKLREAKPSQAIIMLTAKGSENDIVTGFSAGADDYVSKPFSLKELMVRVEAVLRRSG 125

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +   +   G I             +   L RRE  I+ YL    G+ V K ++   ++
Sbjct: 126 KNLGTAKVSIGGIIFDEAQLKASYDDKTEELTRREMDIVLYLHRQEGRIVPKRELLLEVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
              D  VE   V+ H+ KLRKK+    G D   + + R  GY ++
Sbjct: 186 HYNDPDVETRTVDIHVLKLRKKITELAGEDKPLIVTVRGEGYKLE 230


>gi|153940472|ref|YP_001390134.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936368|gb|ABS41866.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318224|gb|ADF98601.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLP--GMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N  +   I +  D R+  +  +   L  RE  IL+ LM    K   K+ +F +
Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VW-SSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229


>gi|226195970|ref|ZP_03791556.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|225931863|gb|EEH27864.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
          Length = 217

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +   A    DG   +   SL       + A  D+      L+    + L+
Sbjct: 2   LLVEDDPWLGEAVRAQIEKDGHPTDCVASLAHARRHVAVAPYDLIL--LDLLLPDGRGLD 59

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +RA  S VP+I ++    +   +   ++G DD + KP    E+ ARV+A+ RR   
Sbjct: 60  FLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARRYSG 119

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N   + G + V    R     G    L   E  +LE L+ + G  ++K Q+   +Y  
Sbjct: 120 NPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERLYSF 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE V  N +E H+S+LRKKL    G + +++ R LGY +
Sbjct: 180 SDE-VGSNTIEVHVSRLRKKL----GAELIETVRGLGYRL 214


>gi|270293867|ref|ZP_06200069.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275334|gb|EFA21194.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 229

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + +       ++G  ++  NS E E          +  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAE-EALRMDIGSYSLLLLDVMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + +  +  +Q+P+I I+   +   T+  F+ G DD ++KP   RE+ ARV A+ RR +
Sbjct: 65  ASMLKKDKKTAQIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRRTR 124

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +  +     + +    +   + GE  PL ++E  IL  L+ N+G+  ++  I +
Sbjct: 125 QGETEHAPEQIVYKTLVLDIIKKKVCIDGEEAPLTKKEFEILLLLLQNKGRVFSREDILN 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 185 RIW-SDEVYVLDRTIDVNITRLRKKIGVYG--KCIVTRLGYGYCFE 227


>gi|241763559|ref|ZP_04761611.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax delafieldii 2AN]
 gi|241367290|gb|EER61630.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax delafieldii 2AN]
          Length = 227

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G   +   +      L      D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLP--GLDGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R    Q+P++ ++    ++  +   + G DD + KP    E+LARV  I RR +
Sbjct: 61  QVLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                N      + +    R     G    L  +E  +LE L+   G+ + ++ I S ++
Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  + +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRLKIDEGQDVKLIQTVRGMGYVLE 222


>gi|238921655|ref|YP_002935170.1| DNA-binding transcriptional regulator CpxR [Edwardsiella ictaluri
           93-146]
 gi|238871224|gb|ACR70935.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Edwardsiella ictaluri 93-146]
          Length = 232

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G  +   +  E    +   A  D+  ++  +  K    +
Sbjct: 4   ILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAILD-ASIDLLLLDVMMPKK--NGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R H Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  DTLKELRQHHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +  +          +   +++    ++    G+   L   E  +L  L  + G+ V++  
Sbjct: 121 NEQQQNSDSGAPILQVDRLQLNPGRQEASFDGQPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   + G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPERQDGQPWFKTLRGRGY 226


>gi|153811126|ref|ZP_01963794.1| hypothetical protein RUMOBE_01517 [Ruminococcus obeum ATCC 29174]
 gi|149832624|gb|EDM87708.1| hypothetical protein RUMOBE_01517 [Ruminococcus obeum ATCC 29174]
          Length = 230

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + + E+ ++      V  +   ++      +
Sbjct: 4   ILVCDDDKEIVEAIEIYLTQEGHHI--LKAYDGEQAIRVLQNHPVDLLIIDVMMPKLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 62  RATLKIREKNALPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQ 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   N  ETG + +  D ++  V GE   L   E RIL +L+ N+G+  +  QI+
Sbjct: 122 LGAMTEKKENIYETGGLMIDDDRKEVTVDGESVKLTPIEYRILLFLVQNQGRVFSINQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             I+     A + N V  HI  +R+K+  N      +     LGY ++
Sbjct: 182 ENIWNEEAIAAD-NTVAVHIRHIREKIEINPKEPRYLKVVWGLGYKVE 228


>gi|295689164|ref|YP_003592857.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295431067|gb|ADG10239.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 237

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   +          +G S+   +  E  E    S   D+  ++  +       +E
Sbjct: 14  LLIDDDDQLTTMLSEFLVREGFSVGAAHDGERGEAAALSGDYDLVVLDVMMPR--LSGIE 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + R IR  S+VP++ ++        +   D G DD V KP    E++AR+ AI RR+   
Sbjct: 72  VLRRIRRASKVPVLLLTARGDEIDRIAGLDLGADDYVPKPCSPGELVARIRAILRRVLTN 131

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +N+    G ++++   R  +  G+   L   E  +LE L  + G+ V+K Q+    
Sbjct: 132 KDPTANDMISKGRLKLWPASRQAQWDGQPIELTGTEFSLLEELARHAGQLVSKDQLSLNA 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            G      +   ++ HIS +R+KL   + G   + S R  GY +
Sbjct: 192 LGRPLTPYDRR-IDVHISSIRQKLGVRRDGSSSILSVRSQGYQL 234


>gi|229591534|ref|YP_002873653.1| putative two-component system regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363400|emb|CAY50565.1| putative two-component system regulator [Pseudomonas fluorescens
           SBW25]
          Length = 237

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 10/227 (4%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +L+DD   + +        +G +    ++ E  E    S R  +  ++  L  +  
Sbjct: 11  MISVLLVDDDQELTEMLRQYLECEGFAATAVHTGEAGEAEALSGRYSIVVLDVMLPQR-- 68

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +E+ R IRA SQVP++ ++        +   + G DD V KP    E++AR+ AI RR
Sbjct: 69  SGIEVLRRIRAVSQVPVVLLTARGDNIDRITGLELGADDYVPKPSSPGELVARLRAIMRR 128

Query: 119 LKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           ++     +    +TG + ++   R     G    +   E  +LE L  + G+ V+K  + 
Sbjct: 129 VQAVGQPTTEVIKTGSLVLWPGKRQALWNGAELGVTSTEFSLLEELARSAGQVVSKKDLS 188

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
               G      +   ++ HIS +R+KL  +      + S R LGY +
Sbjct: 189 LNALGCPLTRYDRR-IDVHISSIRQKLGPRPDAKAWIQSVRGLGYLL 234


>gi|87301808|ref|ZP_01084642.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283376|gb|EAQ75331.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 263

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++     F   G  +E  +     + L   A  D+  ++  L       L
Sbjct: 5   ILLIEDDEDMRELVAGHFEHGGFVVETADDGIKGQALALQASPDLILLDLMLPKV--DGL 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R   +   +P++ I+     +  +  F+SG DD + KP    E++ RV A+ RR
Sbjct: 63  TLCQRLRRDERTAGIPILMITALGGTKDKVSGFNSGADDYLTKPFDLEELMVRVKALLRR 122

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +     E   L   E  +L  L+   G+ VA + 
Sbjct: 123 SDRAPLSTKHSEILSYGPLTLVPERFEAIWFDEPVRLTHLEFELLHCLLQRHGQTVAPSL 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 183 ILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231


>gi|299536678|ref|ZP_07049990.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298728162|gb|EFI68725.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 232

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 87/227 (38%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +G  +    +         +   D+  ++  L       L
Sbjct: 5   LLLIEDDTAIGRIVKDTLEQEGYYVTWSTTGLEGLADFQTQPFDLVLVDWMLPE--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + IR  S VP++ +S        ++    G DD + KP    E+ ARVA+  RR + 
Sbjct: 63  TVCQNIRWESDVPILMMSARKEDADKVEGLQ-GADDYIAKPFSLEELKARVASHLRRWRR 121

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 +  + A    + +    +   V  +   L ++E  ++  L  N  +   K +++
Sbjct: 122 YHKQDVIEEHTAYANGLTIDWQRQIVCVYQQEIALTQKEFALVRLLAKNPSQTFTKEELY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             I+       + + V  HI  LR+KL++ +   + + +    GY  
Sbjct: 182 QHIWQQATLE-DTHTVTVHIKALREKLKDSVKNPNFIQTVWGKGYRF 227


>gi|329297352|ref|ZP_08254688.1| osmolarity response regulator [Plautia stali symbiont]
          Length = 239

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVIDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGSREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|299068400|emb|CBJ39624.1| Transcriptional regulatory protein, CheY family [Ralstonia
           solanacearum CMR15]
          Length = 230

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + + D  +     DG++ E             +A  D+  ++  L        
Sbjct: 6   ILIIEDESAIADTILYALSTDGMTAEHCALGGEGLARLRAASFDLVILDVGLPDV--NGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  R +R  S VP+I ++        +   + G DD V KP   RE+ ARV  I RR+  
Sbjct: 64  EACRTLRTFSDVPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRVSG 123

Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +                 + G     +G    L R E R+L  L+   G+  ++ Q+  
Sbjct: 124 RSVAPAVPQPPPSTAFMHDAAGARLAYRGHWLDLTRYEYRLLALLLRYPGRIYSRAQLME 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            ++    + V+   V++H+  +R KLR      DP+ + R +GYS++
Sbjct: 184 LVWHDAGDTVD-RTVDTHVKTVRAKLRAIDAQADPIRTHRGMGYSLE 229


>gi|256390046|ref|YP_003111610.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356272|gb|ACU69769.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 222

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +              + +  V  +   L   G   LE
Sbjct: 5   LLAEDDAAISEPLARALRREGYEV---TVRADGPGALLAGQSGVDLVVLDLGLPGMDGLE 61

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 62  VCRRLRADGHTFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGTP 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    +R+  +     +  +   L  +E  +L  L+   G+ V + Q+   ++   
Sbjct: 122 DLGNG-VHGVRIDIESHRAYLGDQELNLTAKEFDLLRVLVREVGRVVTRDQLMREVWDTT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
             +     ++ HIS LRKKL ++      + + R +G+  +
Sbjct: 181 WWS-STKTLDMHISWLRKKLGDEASRPRFITTVRGVGFRFE 220


>gi|170701551|ref|ZP_02892501.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170133545|gb|EDT01923.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 224

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 8/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D A+  +  +      G  ++  ++         SA  D   ++  L   G   L + 
Sbjct: 6   VEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLP--GADGLAIL 63

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
             +R      P++ +S    +   +    +G DD + KP    E+ AR+  + RR + S 
Sbjct: 64  TAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQASG 123

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R      +  PL   E R+LE++M N G+ + +T +F A++G
Sbjct: 124 VPQQTLLTVGALELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEAVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      N+++ H+ +LRKK+        + + R  GY +
Sbjct: 184 -YHFDPGTNLIDVHMGRLRKKIDPPGVVPMIQTVRGSGYML 223


>gi|134102924|ref|YP_001108585.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291007990|ref|ZP_06565963.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915547|emb|CAM05660.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 237

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 9/227 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L +D   +          +G S+E          L++++   V  +   L       
Sbjct: 16  VVLLAEDDPAIAVPLSRALQREGYSVEVIGDGPA--ALRAASSGGVDLLVLDLGLPEMDG 73

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +RA  + +P++ ++        +   D+G DD V KP    E++AR+ A+ RR 
Sbjct: 74  LEVCRRLRAQGRGLPVLMLTARTDEVDFVVGLDAGADDYVAKPFRLAELMARIRALLRR- 132

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    E   +R+    R   V      L  +E  +L  LM + G+ V + +I   ++ 
Sbjct: 133 -GSPETLEASGVRLELTARRVLVDDHEIQLANKEFELLRVLMQHAGQVVTREEILEEVWP 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG---FDPVDSKRFLGYSIDWN 223
                     ++ HIS LR+KL +  G      + + R +G+  + +
Sbjct: 192 EPSRKG-SKTLDMHISWLRRKLGDSNGRFDDQRIATVRGVGFRFNAD 237


>gi|255279926|ref|ZP_05344481.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255269699|gb|EET62904.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 236

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++I+D A +++G   L   +   + E  N  +  E L+ +   D+  ++  +   G   L
Sbjct: 7   LIIEDDADIREGVRILLESENYCVREAENGRKGLEMLEDTT--DLVILDIMMP--GMSGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S VP++ ++        L    +G DD + KP  + E+L RV A+ RR +V
Sbjct: 63  RTCEEIRRVSNVPVLFLTAKAQESDKLIGLMAGGDDYLPKPFSYAELLGRVKALLRRYRV 122

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                          E G IR+     +  V G +  +   E  +L  +M + G+  +  
Sbjct: 123 YMGKTGESTEKETYLERGGIRIHETFNEVWVDGVLKEMTDIEYHMLLLMMQHPGRIFSAQ 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
            ++ +I+         + +  HI KLR K+         + +    GY  D
Sbjct: 183 NLYESIWEEPYFYSCNSTIMVHIRKLRVKIEADPKYPKYIRTVWGKGYKFD 233


>gi|167585551|ref|ZP_02377939.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 242

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKNGVEADTALSMQTFDLLILDLGLP--KLSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRIATVRGLGYCLE 219


>gi|292486595|ref|YP_003529463.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Erwinia amylovora CFBP1430]
 gi|292897832|ref|YP_003537201.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291197680|emb|CBJ44775.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291552010|emb|CBA19047.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia amylovora CFBP1430]
 gi|312170655|emb|CBX78918.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia amylovora ATCC BAA-2158]
          Length = 233

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G ++      E    L  S   D+  ++  +  K    L
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDST-VDLLLLDVMMPKK--NGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  DTLKELRQQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           S  +           +   +R+    ++    G+   L   E  +L  L  + G+ V++ 
Sbjct: 121 SEQQHLQHDNSSPTLDIDLLRLNPGRQEASFDGQTLDLTGTEFTLLYLLAQHLGQVVSRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
            +   + G      +   ++ HIS LR+KL   + G     + R  GY
Sbjct: 181 HLSQEVLGKRLTPFD-RAIDMHISNLRRKLPERQDGHPWFKTLRGRGY 227


>gi|146302027|ref|YP_001196618.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146156445|gb|ABQ07299.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 223

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 110/223 (49%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   + +  I    ++  ++    + E    L      D+  ++  L   G   ++
Sbjct: 4   LLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLP--GIDGIQ 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L +++R      P++ +S   +    +   DSG DD + KP H +E+++RV A+ RR K 
Sbjct: 62  LVKLMRFKKIHTPILILSALSNTDDKVTALDSGADDYLVKPFHFKELISRVNALTRRTKF 121

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           + N  ET    G + +  D        ++  L  RE ++L YL+ NR K +++TQI +A+
Sbjct: 122 NYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLYLLENRNKVMSRTQILTAV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G+ +     NVV+ +IS LR K+ +      + + + +GY +
Sbjct: 182 WGI-NYDNNTNVVDVYISYLRNKIEHN--HKFIHTIKGIGYML 221


>gi|312958810|ref|ZP_07773329.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311286580|gb|EFQ65142.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 224

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     D       + G  ++   S      L    R ++  ++  L        
Sbjct: 3   ILVVEDEQKTADYVQQGLSESGYVVDCAPSGVDGLHLARQHRYELVILDVNLPNT--DGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   +R      ++ ++    L   +   D G DD + KP    E+LARV  + RR + 
Sbjct: 61  EVLEQLRRDGDQRVMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRSEH 120

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +               L  +E  +L  LM   G+ + +TQI S ++ 
Sbjct: 121 IPLPEVLRVADLELDPRRHRAYRGNRRIDLTTKEFALLHVLMRQTGEVMTRTQIISLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  IS+LR K+ ++     + + R +GY ++
Sbjct: 181 M-NFDCDTNVVEVSISRLRAKVDDQSEVKLIHTIRGVGYVLE 221


>gi|254526324|ref|ZP_05138376.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
 gi|221537748|gb|EEE40201.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
          Length = 260

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++D         G  ++        + L      D+  ++  L       L
Sbjct: 5   ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR
Sbjct: 63  TLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRR 122

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +             GP+ +  +  +         L   E  +L  L+   G+ V+  
Sbjct: 123 TNRAQLNSSNQQEILNYGPLTLVPERFEAMWFESPIRLTHLEFELLHCLLQRHGQTVSPA 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I   ++G ++   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 183 LILKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPVYIKTVYGAGYCLE 232


>gi|148979669|ref|ZP_01815641.1| DNA-binding response regulator [Vibrionales bacterium SWAT-3]
 gi|145961646|gb|EDK26944.1| DNA-binding response regulator [Vibrionales bacterium SWAT-3]
          Length = 219

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I          E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDEPRLGQQIIETLEGADWVPELSQDGIDALYRATSEEWDAIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P+I +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S     + G + + +       QG+   L   E +++ Y M N+ K +++T++   IY 
Sbjct: 121 GSAAPVLQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N VE  I ++RKK+  K+    + + R LGY ++
Sbjct: 181 Q-DFDRDSNTVEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|117618843|ref|YP_855862.1| two-component response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560250|gb|ABK37198.1| two-component response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 242

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D A + D   A     G+             +  + + D+  ++  +       
Sbjct: 15  LVLIAEDEAEIADILAAYLQRHGLRTLHAADGREALAMHQTCKPDLLLLDVQMPQ--LDG 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++   IRA   +P+I ++        L     G DD V KP +  E++ARV A+ RR +
Sbjct: 73  WQVLSEIRARGDMPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRSQ 132

Query: 121 VSNN----RAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            +          GP ++  +  +  +    + ++  L   E ++L  LM    +  ++ +
Sbjct: 133 AAKQATARVLRVGPFQIDLESHEASICRDERQQMLDLTLTEFKLLASLMRTPKRVFSRAE 192

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +      D   +E  V+SHISKLRKKL  +       S   +GY  
Sbjct: 193 LLTHCLPEGD--TQERTVDSHISKLRKKLEAQGIQGVPASVWGVGYRF 238


>gi|327394208|dbj|BAK11630.1| transcriptional regulatory protein BasR/PmrA BasR [Pantoea ananatis
           AJ13355]
          Length = 228

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL+  G +      G   +G +++   E   +S    +  ++  L    E  L
Sbjct: 3   ILIVEDDALLLQGLVLALEGAGYVCDGVSTVRSAEAHLASGLYSLVLLDIGLPD--EDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L + +R   Q+ P++ ++   +++  +   D+G DD + KP    E+LAR+ A+ RR +
Sbjct: 61  HLLQRLRRQKQMQPVLILTARDTIEERIAGLDAGADDYLIKPFALDELLARIRALIRRHV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++R E G + +    R   +   +  L  +E  IL  LM   G  V +  ++  IY 
Sbjct: 121 NQGDSRLEVGNLSLDMTHRQIHLDDVLLDLTPKEFSILSRLMLKAGHPVHRELLYQDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD     N +E HI  LR    +K+G   + + R  GY++
Sbjct: 181 -FDNEPSTNTLEVHIHNLR----DKVGKATIRTVRGFGYAL 216


>gi|264680915|ref|YP_003280825.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299530906|ref|ZP_07044320.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262211431|gb|ACY35529.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298721127|gb|EFI62070.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 225

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG +      G  +    N  E +  L +S+  D+  ++  L       
Sbjct: 3   ILIAEDDQVLADGLLRTLRSSGAVVSHVANGSEADTALLTSSEFDLLILDLGLPKV--HG 60

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +R     +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 61  LEVLKRLRGRGDALPVLILTAADSIEERVQGLDYGADDYMAKPFALSELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI- 177
           +  +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGGASSTIKHGPLVYDQTGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 178 -YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +G   E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 EWG---EEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220


>gi|256786504|ref|ZP_05524935.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 94/220 (42%), Gaps = 9/220 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP- 64
           DD   + +        +G  +                R D   ++  L       L +  
Sbjct: 2   DDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPD--MDGLSVLG 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124
           R+ R    VP++ ++   +++  +    +G DD V KP    E++AR+  + RR   ++ 
Sbjct: 60  RLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADR 119

Query: 125 RAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           R++     G + +  D  +    G+   L   E  +L +LM N  + ++K QI   ++  
Sbjct: 120 RSDSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRVW-S 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 179 YDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 217


>gi|118444264|ref|YP_877513.1| subtilin biosynthesis regulatory protein spaR [Clostridium novyi
           NT]
 gi|118134720|gb|ABK61764.1| subtilin biosynthesis regulatory protein spaR [Clostridium novyi
           NT]
          Length = 220

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            + IDD   + +   +    +G ++           +++L    + D+  ++  +     
Sbjct: 4   ILAIDDEEGILNIIKSALEKEGHNVTTISNPTCFSKDKYL----KYDLILLDVMMPE--I 57

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               L + IR     P+I ++     Q  +     G DD ++KP    E+ ARVAA  RR
Sbjct: 58  DGFSLCKEIRNLVDCPIIFLTAKTMEQDIVMGLSLGGDDYISKPFGISELRARVAAHLRR 117

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N      ++     ++     ++ P  + E  I EYL  N G+  +K +I+  +
Sbjct: 118 EHREKQNAFSVSDVKFNITAKEAYYNEKLVPFTKSEYSICEYLAINHGQVFSKERIYEKV 177

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G++  +    +VE HI  +R KL++ +G +P+++   +GY 
Sbjct: 178 FGVYGNSDTTAIVE-HIKNIRSKLKS-IGINPIETVWGIGYK 217


>gi|296395434|ref|YP_003660318.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296182581|gb|ADG99487.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 238

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 13/210 (6%)

Query: 23  GVSLEGFNSLEFEE---WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI 78
           G+ L GF+ +  +     L +  ++   A+   +   G   + +   +RA    +P+  +
Sbjct: 26  GLRLSGFSVVTADNGAAALSAVHQQHPDALILDMNMPGLDGVSVVTALRAMGDDIPICVL 85

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--------NRAETGP 130
           S   S+   ++  ++G DD + KP    E++ARV A+ RR   ++               
Sbjct: 86  SARSSVGDRIEGLEAGADDYLTKPFVLGELIARVKALLRRPSTTSRAAPTVEYGVIHVDY 145

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           + V   GR   V  E   L +RE  +L  L  N G  +++T++   ++G +D A + NVV
Sbjct: 146 LGVDIPGRRVTVDDESIELTKREFELLAALAENTGVVLSRTELLERVWG-YDFAADTNVV 204

Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +  LRKKL  K     + + R  G+ +
Sbjct: 205 DVFVGYLRKKLELKGRHRLIHTVRGYGFVL 234


>gi|271501164|ref|YP_003334189.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270344719|gb|ACZ77484.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 231

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G  ++   + +  E L  + + D  AI   ++  G+   
Sbjct: 3   LLLVEDEEKTSSYIYRALSELGYMVDI--AADGIEGLHLAVQYDYDAIILDVMLPGKDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +R H Q P++ +S   S+   +     G DD ++KP    E++AR+ A+ RR   
Sbjct: 61  SVLEGLRLHKQTPVLMLSARGSVDERVKGLRHGADDYLSKPFSLIELVARIQALLRRRVS 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 +     + +    R     G+   L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGADVTQLHIDDMHLDLLARRVTRAGQRLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  + +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAVKRLRAKVDTPYTVKLLHTVRGMGYVLE 222


>gi|239942189|ref|ZP_04694126.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988655|ref|ZP_04709319.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445643|ref|ZP_06585033.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348590|gb|EFE75494.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 237

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 99/240 (41%), Gaps = 33/240 (13%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           + ++D  ++++         G ++    +G + LE         R D++ ++  +   G 
Sbjct: 7   LFVEDDDVIREATQLALERVGFTVTAMPDGLSGLEAFRAD----RPDIALLDVMVP--GL 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             + L R IR  S VP+I +S        +   ++G DD V KP     ++AR+ A+ RR
Sbjct: 61  DGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 120

Query: 119 LKVS------------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160
              +                        G + V +DG +    GE   L   E R+L   
Sbjct: 121 FGHAAGPDGAGPGGTESEDEALGGVLVFGDLEVDTDGMEVRRAGEQVALTPTEMRLLLEF 180

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +  G  +++ ++   ++  +    +  VV+ H+ +LR K+    G D +D+ R  GY +
Sbjct: 181 SSAPGTVLSRDRLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIDTVRGFGYKL 235


>gi|290352143|dbj|BAI78782.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+L R+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLDRIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|259906787|ref|YP_002647143.1| DNA-binding transcriptional regulator CpxR [Erwinia pyrifoliae
           Ep1/96]
 gi|224962409|emb|CAX53864.1| Two-component response regulator [Erwinia pyrifoliae Ep1/96]
 gi|283476573|emb|CAY72401.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia pyrifoliae DSM 12163]
 gi|310765997|gb|ADP10947.1| DNA-binding transcriptional regulator CpxR [Erwinia sp. Ejp617]
          Length = 233

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G ++      E    L  S   D+  ++  +  K    +
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDST-VDLLLLDVMMPKK--NGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  DTLKELRQQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           S  +           E   +R+    ++    GE   L   E  +L  L  + G+ V++ 
Sbjct: 121 SEQQHLQHDNSSPTLEIDLLRLNPGRQEASFDGETLDLTGTEFTLLYLLAQHLGQVVSRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
            +   + G      +   ++ HIS LR+KL   + G     + R  GY
Sbjct: 181 HLSQEVLGKRLTPFD-RAIDMHISNLRRKLPERQDGHPWFKTLRGRGY 227


>gi|212703723|ref|ZP_03311851.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098]
 gi|212672875|gb|EEB33358.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098]
          Length = 254

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   ++         +G S     +    E+L+   R   S I   ++  G   L
Sbjct: 7   ICIVDDDEEIRSLLSDYLRRNGFS--TCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +RA S VP+I ++    +   +   + G DD ++KP   RE+LAR+  + RR + 
Sbjct: 65  ELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRRTEG 124

Query: 122 SNNR-------AETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              R        +     +    R      G V  L   E R+LE  + N  + +++ ++
Sbjct: 125 GARRDQPETTPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRVLSRDEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                G  +    +  ++  IS+LR +LR+       + + R  GY +
Sbjct: 185 LERTQGR-NAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVL 231


>gi|170694237|ref|ZP_02885392.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170140977|gb|EDT09150.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 219

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G  A     G +++             +    +  ++  L       ++
Sbjct: 4   LLVEDDDLIGCGVEAGLRQAGFTVDWARDGHKAGLALDTTSYALVVLDLGLPRV--SGMD 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + IR A + VP++ ++   ++   +   ++G DD + KP    E+ AR  A+ RR + 
Sbjct: 62  LLKRIRDAGNDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELTARCRALLRRAQG 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +      G + V    +  +V G   PL  RE  IL  L+ N+G   +++++  ++YG 
Sbjct: 122 RSVEVIRYGDLTVNPAAQTAQVAGTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + +E N +E HIS LR+KL    G   + + R +GY ++
Sbjct: 181 WQQEIESNAIEVHISNLRRKL----GARLIRTVRNIGYVVE 217


>gi|172061615|ref|YP_001809267.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994132|gb|ACB65051.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 242

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   S    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLP--KMSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRISTVRGLGYCLE 219


>gi|325263338|ref|ZP_08130073.1| DNA-binding response regulator YycF [Clostridium sp. D5]
 gi|324031731|gb|EGB93011.1| DNA-binding response regulator YycF [Clostridium sp. D5]
          Length = 221

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 5/218 (2%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +I+D  L+         + G      ++ +    L  +  ED+  ++  L       L L
Sbjct: 5   IIEDDKLLNQALDIALQNAGYDTICVHTKKEALTLLGNG-EDLLLVDIGLPD--GDGLRL 61

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            + ++    +P I ++     +  L  FD G DD V KP   + +L R+ A+++R    +
Sbjct: 62  YQELQKTRNIPAIFLTAKDEERDMLAAFDMGADDYVVKPFSMKVLLKRIEAVFKRSS-ED 120

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
                  I ++   +   ++G+   L  +E ++LEYL+ N+G+ + K  I   I+GL  +
Sbjct: 121 QTLSCREITLYPLRKQVFLKGQEITLTAKEYQLLEYLLRNQGQVLTKENILEQIWGLDGQ 180

Query: 184 AVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            V +N V   I++LRKK+  +    + + +   LGY I
Sbjct: 181 FVVDNTVSVTINRLRKKIEPDAKQPEYIKNVFGLGYRI 218


>gi|257877232|ref|ZP_05656885.1| two-component system response regulator [Enterococcus casseliflavus
           EC20]
 gi|257811398|gb|EEV40218.1| two-component system response regulator [Enterococcus casseliflavus
           EC20]
          Length = 235

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59
            +L++D   +          +G         +    L  Q +   D+  ++  L      
Sbjct: 5   ILLVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQANAFDLILLDWMLPI--YD 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            + + R IR  S +P++ ++        +   D G+DD + KP    E+ AR+  I RRL
Sbjct: 63  GITVARRIRKESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 122

Query: 120 KVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +          N+   G + +       +V GE   L  +E  IL  LM        +  
Sbjct: 123 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + I+G ++   + NVV+ +I  LR KL        + + R LGY +
Sbjct: 183 LLNEIWG-YEYDGQTNVVDVYIRTLRNKLDVCGKGKMIATVRGLGYVL 229


>gi|237809753|ref|YP_002894193.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237502014|gb|ACQ94607.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 241

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D         G  +      +  + L  +    +  ++  L   GE  L
Sbjct: 9   ILVVDDHADIRDLLKRFLEQHGFKVTCARDGKEMKRLLENGHFTLLVLDLMLP--GEDGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  +
Sbjct: 67  TLCRDLRARSSLPVVMLTAMGEEMDRIIGLEMGADDYLAKPFNPRELLARIRAVLRRANL 126

Query: 122 S-------NNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     R      ++    R+  +  G    L   E  +L+  +    + +++ Q+
Sbjct: 127 MPDSQEELPERLHFDHWQLDLARRELVDEHGVAISLSTAEFDLLKVFLERPKRVLSRDQL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                G   +A +   +++ +S+LR+KL  +    + + +    GY  
Sbjct: 187 LDMARGREAQAFD-RAIDTLVSRLRRKLEVDPKKPELIKTVWGGGYMF 233


>gi|323343000|ref|ZP_08083231.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463064|gb|EFY08259.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 231

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++    L  +DG  ++ + N  +  E L      D++ ++  +       
Sbjct: 4   ILVVDDDFEIRELLELLLTNDGFQVQTYSNGYDALEALDDG--FDLAILDVMMPE--IDG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L R IR   Q+P++ ++     +  +  F +G DD V KP  + E+  RV A+ RR  
Sbjct: 60  IKLCRKIRDAHQIPILFLTAKEKEEDVVRGFSAGADDYVMKPFSYLELSVRVKALLRRYC 119

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              ++         E G +R+     +    G +  L  RE RIL  L+ N G+     Q
Sbjct: 120 NYGSKQQGNDYEMLEEGNLRLNRRTNEVYKNGVLLDLTEREYRILRLLLGNPGRIYTMEQ 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221
           +F  ++         N V  HI  LRKK+ ++     +  +    GY+ D
Sbjct: 180 LFEIVWEDTYFYSCSNTVMVHIRNLRKKVEDEPNKPKIVKNVWGKGYTYD 229


>gi|259047938|ref|ZP_05738339.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035358|gb|EEW36613.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 227

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + +    +      S+E  +  E   +   S   D+  ++  +  K    +
Sbjct: 3   ILVAEDEIDLAEALKMMLEMQKYSVEMVHDGEDALFYAESTPYDLILLDVMMPKK--SGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R++    P++ ++    L+  +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  EVVRELRSNGIHTPVLMLTAKSQLEDKVTGLEEGADDYLTKPFEGAELLARVKSLLRRPN 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V   +    G + +  D            L  +E +++EY M N  + ++   I   ++G
Sbjct: 121 VFVASVMTLGNVELNRDTFTMMTSKGQVLLNNKEFQLMEYFMMNSNQVLSTDLIMEKVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D   E NVV  +IS LRKKL        + S R LGY +
Sbjct: 181 L-DSEAEINVVWVNISSLRKKLATIEADVTIKSARGLGYQL 220


>gi|225028286|ref|ZP_03717478.1| hypothetical protein EUBHAL_02558 [Eubacterium hallii DSM 3353]
 gi|224954332|gb|EEG35541.1| hypothetical protein EUBHAL_02558 [Eubacterium hallii DSM 3353]
          Length = 225

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 12/223 (5%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   +++    L G +G  +E   +      +  +   D+  ++  +   G    +  R
Sbjct: 2   DDNPEIREIIQVLLGGEGYLVETAGNGVKALEMLENREYDLIILDIMMP--GMDGYQTCR 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            +R  S  P++ +S           F SG DD + KP  + E+++R  A+ RR +V   +
Sbjct: 60  KMREESNAPILFLSARTKDSDKTLGFSSGGDDYLAKPFSYNELISRAKALIRRYQVYKGK 119

Query: 126 AE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           AE            + V  + +     G++  L   E  IL  L+ NR +  +  +++ A
Sbjct: 120 AEKVETPKNFSCKNLVVAEETKSVYSDGQLLELTDTEYAILLLLLKNRRQVFSTERLYEA 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
           ++        EN V  HI  LR+K+         + +    GY
Sbjct: 180 VWKENFYYGAENTVMVHIRNLRRKVERDSKNPMIIKTSWGKGY 222


>gi|325261572|ref|ZP_08128310.1| response regulator DrrA [Clostridium sp. D5]
 gi|324033026|gb|EGB94303.1| response regulator DrrA [Clostridium sp. D5]
          Length = 233

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 21/218 (9%)

Query: 8   RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67
             L   GY+A    DG+  EG  +   +++       D+  ++  L         +  +I
Sbjct: 28  ELLTDAGYVAHVAGDGL--EGITAFRQKQY-------DLVLLDLMLP--KIDGYAVCEMI 76

Query: 68  RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127
           R  S VP++ ++        L  FD   DD + KP   + +L RV A+ RR +  +   E
Sbjct: 77  RKESNVPVLMLTALDEEDDQLKGFDVLADDYITKPFSVKLVLKRVEALLRRTREDHCEDE 136

Query: 128 -----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G I++        V GE  PL + E  +L  LM N+G+   + ++   ++G +D
Sbjct: 137 NALLCHGSIQLDPVSLRVYVSGEDVPLTKLEFDLLHLLMKNKGRVFTRDELLDLVWG-YD 195

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A  +  V  HI  LR+KL    G D +++ R +GY  
Sbjct: 196 FAGYDKAVNIHIMNLRRKL----GADCIETIRGVGYRF 229


>gi|296393679|ref|YP_003658563.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296180826|gb|ADG97732.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 228

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G ++    +           R D   ++  +   G   L
Sbjct: 3   ILVVDDDRAVRDSLRRSLLFNGYAVRTAENGAEALSQVLECRPDAMVLDVMMP--GLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           E+ R +R A   +P++ ++   ++   +   D+G DD + KP    E+LARV A+ R   
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDTVSERVAGLDAGADDYLPKPFALEELLARVRALLRRRT 120

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    RD         L R E  +LE LM N  + + +T++   
Sbjct: 121 PQAEPGAETLAFLDLSLDPATRDVRRGDREISLTRTEFALLEMLMENPRRVLTRTRLLEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E +I  LR+K         + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYIGYLRRKTEADGENRLIHTVRGVGYVL 223


>gi|260770826|ref|ZP_05879755.1| response regulator [Vibrio furnissii CIP 102972]
 gi|260614063|gb|EEX39253.1| response regulator [Vibrio furnissii CIP 102972]
          Length = 228

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E       +  + V  I   ++      +
Sbjct: 4   ILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAG---LHAVNDSVDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R   Q P++ ++        +   + G DD + KP   RE+LAR+ AI RR   
Sbjct: 61  ETLKKLREKWQTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTGN 120

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E   ++++   ++   QG++  L   E  +L + + N G+ + K  +   
Sbjct: 121 HTQSKPTDMIECQDLQLYPGKQEAYCQGQLLDLTTTEFALLTHFVQNPGETLTKEMLSLD 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           + G    A +   ++ H+S LRKKL     G   + + R  GY
Sbjct: 181 VLGKRLAAFD-RAIDMHVSNLRKKLPERSDGKPRIKTLRGRGY 222


>gi|254994183|ref|ZP_05276373.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
          Length = 163

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 9/162 (5%)

Query: 67  IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120
           +R  S VP+I ++   S    +   + G DD V KP     ++AR+ A+ RR       +
Sbjct: 1   MREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNSATSTE 60

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +  ET   ++    R+   QGE+   L  +E  +L +LM +  +  ++ Q+   ++G
Sbjct: 61  NNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLLEQVWG 120

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +    +E  V+ HI +LR+K+  +     + +   +GY  D
Sbjct: 121 -YQFYGDERTVDVHIKRLRQKIATET-KPFLHTVWGVGYKFD 160


>gi|119960910|ref|YP_948727.1| KDP operon transcriptional regulatory [Arthrobacter aurescens TC1]
 gi|119947769|gb|ABM06680.1| KDP operon transcriptional regulatory [Arthrobacter aurescens TC1]
          Length = 224

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 6/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D A +          +G   +        + LQ++A++ V  +   L       
Sbjct: 3   LVLIVEDEARIARAMQVTLQANGY--QALTVGTGADALQATAKQPVEIVVLDLGLPDMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +E+ R IR  S +P+I +S   + +  ++  D+G DD V KP    E+LAR+    RR  
Sbjct: 61  VEIIRRIRGWSSMPIIVLSARHASEDKVEALDAGADDYVTKPFGLDELLARLRVASRRVV 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +       T    V   G+     G    L   E  ILE L+ N+GK V++ QI + ++
Sbjct: 121 TEHEEPTLATTDFMVDLAGKKIVKDGSEVRLTPTEWNILELLVRNKGKLVSQQQILTQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G    A E   +  +I++LR+KL R+      + ++  +GY  D
Sbjct: 181 GQA-YAKETQYLRVYIAQLRRKLERDPAEPRHLHTEAGMGYRFD 223


>gi|325523766|gb|EGD02019.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 221

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +     +     G +++          L    R D+  ++  L   G    
Sbjct: 3   ILVVEDDAEIGAAVRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDVMLP--GLDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR  
Sbjct: 61  AVLRNLRASGSTTPVLLLTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N+    G + +    R  E+ G+   L R+E  +LE L +   +  +K ++ + ++ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +E    N VE +++++R+KL        + + R +GY I
Sbjct: 181 FGNEPT-ANAVEQYVTRVRRKL--SGSSVEIRTARGMGYQI 218


>gi|229553588|ref|ZP_04442313.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229313213|gb|EEN79186.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 246

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 13/224 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS----SAREDVSAIEAFLIGKGE 58
           + +DD   +       F      L  F  L  +    +    + + D+  ++  L     
Sbjct: 26  LAVDDDTAILAMLKRYFA---WRLPEFRLLTADAGQAALSQLAQQPDLILLDVNLPD--I 80

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               L   IRA + VP+I ++   + Q  +    +G DD V KP    E+ AR+ A  RR
Sbjct: 81  DGFTLTSRIRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRR 140

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +A+    G I +        V      L  ++ +++E+L  N G+  ++ Q++ 
Sbjct: 141 AHQPDKQAQIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYE 200

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+G +D   +E V+  HI ++RK         P+ +   +GY 
Sbjct: 201 KIWG-YDAQGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGYK 243


>gi|144900258|emb|CAM77122.1| two-component cell cycle transcriptional regulator ctrA, winged
           helix family [Magnetospirillum gryphiswaldense MSR-1]
          Length = 233

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D  ++      +   +G+ ++   +   E+ L+     D   I   L+       E
Sbjct: 4   LVVEDDRMMAQVIETMLKAEGMVVD--TTALGEDGLEIGKLYDYDIILLDLMLPDMDGYE 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R +RA   + P++ +S        +     G DD + KP    E++AR+ AI RR K 
Sbjct: 62  VLRRLRASRIETPVLILSGLTEPDKKIKGLGFGADDYLTKPFDKGELVARIQAIVRRSKG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  +TG + V  D R  +V GE   L  +E  ILE L   +G+ + K Q  + +YG 
Sbjct: 122 HAQSVIKTGKLSVNLDQRTVDVGGEPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYGG 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            DE  E  +++  I KLRKKL    G D  +++    GY +
Sbjct: 182 IDE-PELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVL 221


>gi|300788203|ref|YP_003768494.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|261597219|gb|ACX85477.1| AmrE [Amycolatopsis mediterranei U32]
 gi|299797717|gb|ADJ48092.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 228

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 19/211 (9%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
           +DG+      DG              L +  R    AI   +   G   +E+ + +RA  
Sbjct: 28  RDGFGVHVEADG-----------GRALDAVRRLKPVAIVLDIGLSGMDGIEICKALRAAG 76

Query: 72  Q-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128
              P++ ++        L   + G DD + KP   RE+ ARV  + RR       AET  
Sbjct: 77  DWTPVLFVTARDDELDRLLGLEIGADDYLTKPFSPRELAARVRTVLRRAAGVAPAAETFA 136

Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G  RV    R          L   E  +L +L+ + G+ +++ Q+ SA++G +  A   
Sbjct: 137 VGGARVDVLSRRAWAGDAEIVLTSTEFDLLTHLLRHPGQVLSRDQLLSAVWG-YAAAAGT 195

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             V+ H+++LR KL       P+ + R +GY
Sbjct: 196 RTVDVHVAQLRAKL---GASSPIRTVRGIGY 223


>gi|199597045|ref|ZP_03210478.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199592178|gb|EDZ00252.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 226

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 13/224 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS----SAREDVSAIEAFLIGKGE 58
           + +DD A +       F      L  F  L  +    +    + + D+  ++  L     
Sbjct: 6   LAVDDDAAILAMLKRYFA---WRLPEFRLLTADAGQAALSQLAQQPDLILLDVNLPD--I 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               L   IRA + VP+I ++   + Q  +    +G DD V KP    E+ AR+ A  RR
Sbjct: 61  DGFTLTSRIRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRR 120

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +A+    G I +        V      L  ++ +++E+L  N G+  ++ Q++ 
Sbjct: 121 AHQPDKQAQIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+G +D   +E V+  HI ++RK         P+ +   +GY 
Sbjct: 181 KIWG-YDAQGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGYK 223


>gi|15676500|ref|NP_273639.1| DNA-binding response regulator [Neisseria meningitidis MC58]
 gi|59800632|ref|YP_207344.1| putative two-component system transcriptional response regulator
           [Neisseria gonorrhoeae FA 1090]
 gi|121634390|ref|YP_974635.1| putative two-component system regulator [Neisseria meningitidis
           FAM18]
 gi|161869527|ref|YP_001598694.1| two-component system regulator [Neisseria meningitidis 053442]
 gi|194097813|ref|YP_002000856.1| putative two-component system regulator [Neisseria gonorrhoeae
           NCCP11945]
 gi|218767732|ref|YP_002342244.1| putative two-component system regulator [Neisseria meningitidis
           Z2491]
 gi|239998303|ref|ZP_04718227.1| putative two-component system regulator [Neisseria gonorrhoeae
           35/02]
 gi|240013485|ref|ZP_04720398.1| putative two-component system regulator [Neisseria gonorrhoeae
           DGI18]
 gi|240015924|ref|ZP_04722464.1| putative two-component system regulator [Neisseria gonorrhoeae
           FA6140]
 gi|240080064|ref|ZP_04724607.1| putative two-component system regulator [Neisseria gonorrhoeae
           FA19]
 gi|240112274|ref|ZP_04726764.1| putative two-component system regulator [Neisseria gonorrhoeae
           MS11]
 gi|240115018|ref|ZP_04729080.1| putative two-component system regulator [Neisseria gonorrhoeae
           PID18]
 gi|240117303|ref|ZP_04731365.1| putative two-component system regulator [Neisseria gonorrhoeae
           PID1]
 gi|240120557|ref|ZP_04733519.1| putative two-component system regulator [Neisseria gonorrhoeae
           PID24-1]
 gi|240122854|ref|ZP_04735810.1| putative two-component system regulator [Neisseria gonorrhoeae
           PID332]
 gi|240125052|ref|ZP_04737938.1| putative two-component system regulator [Neisseria gonorrhoeae
           SK-92-679]
 gi|240127565|ref|ZP_04740226.1| putative two-component system regulator [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493082|ref|ZP_05106253.1| two-component system regulator [Neisseria gonorrhoeae 1291]
 gi|254804478|ref|YP_003082699.1| putative two-component system response regulator [Neisseria
           meningitidis alpha14]
 gi|260441166|ref|ZP_05794982.1| putative two-component system response regulator [Neisseria
           gonorrhoeae DGI2]
 gi|268594161|ref|ZP_06128328.1| two-component system regulator [Neisseria gonorrhoeae 35/02]
 gi|268596216|ref|ZP_06130383.1| two-component system regulator [Neisseria gonorrhoeae FA19]
 gi|268598340|ref|ZP_06132507.1| two-component system regulator [Neisseria gonorrhoeae MS11]
 gi|268600696|ref|ZP_06134863.1| two-component system regulator [Neisseria gonorrhoeae PID18]
 gi|268603002|ref|ZP_06137169.1| two-component system regulator [Neisseria gonorrhoeae PID1]
 gi|268681476|ref|ZP_06148338.1| two-component system regulator [Neisseria gonorrhoeae PID332]
 gi|268683646|ref|ZP_06150508.1| two-component system regulator [Neisseria gonorrhoeae SK-92-679]
 gi|268685947|ref|ZP_06152809.1| two-component system regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|291044494|ref|ZP_06570203.1| two-component system regulator [Neisseria gonorrhoeae DGI2]
 gi|293397630|ref|ZP_06641836.1| two-component system, OmpR family, response regulator CpxR
           [Neisseria gonorrhoeae F62]
 gi|304388167|ref|ZP_07370290.1| response regulator [Neisseria meningitidis ATCC 13091]
 gi|7225825|gb|AAF41023.1| DNA-binding response regulator [Neisseria meningitidis MC58]
 gi|59717527|gb|AAW88932.1| putative two-component system transcriptional response regulator
           [Neisseria gonorrhoeae FA 1090]
 gi|120866096|emb|CAM09834.1| putative two-component system regulator [Neisseria meningitidis
           FAM18]
 gi|121051740|emb|CAM08044.1| putative two-component system regulator [Neisseria meningitidis
           Z2491]
 gi|161595080|gb|ABX72740.1| two-component system regulator [Neisseria meningitidis 053442]
 gi|193933103|gb|ACF28927.1| putative two-component system regulator [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512122|gb|EEH61467.1| two-component system regulator [Neisseria gonorrhoeae 1291]
 gi|254668020|emb|CBA04398.1| putative two-component system response regulator [Neisseria
           meningitidis alpha14]
 gi|254670824|emb|CBA07224.1| transcriptional regulatory protein CpxR [Neisseria meningitidis
           alpha153]
 gi|261393034|emb|CAX50626.1| putative two-component system transcriptional regulator protein
           [Neisseria meningitidis 8013]
 gi|268547550|gb|EEZ42968.1| two-component system regulator [Neisseria gonorrhoeae 35/02]
 gi|268550004|gb|EEZ45023.1| two-component system regulator [Neisseria gonorrhoeae FA19]
 gi|268582471|gb|EEZ47147.1| two-component system regulator [Neisseria gonorrhoeae MS11]
 gi|268584827|gb|EEZ49503.1| two-component system regulator [Neisseria gonorrhoeae PID18]
 gi|268587133|gb|EEZ51809.1| two-component system regulator [Neisseria gonorrhoeae PID1]
 gi|268621760|gb|EEZ54160.1| two-component system regulator [Neisseria gonorrhoeae PID332]
 gi|268623930|gb|EEZ56330.1| two-component system regulator [Neisseria gonorrhoeae SK-92-679]
 gi|268626231|gb|EEZ58631.1| two-component system regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|291011388|gb|EFE03384.1| two-component system regulator [Neisseria gonorrhoeae DGI2]
 gi|291611576|gb|EFF40645.1| two-component system, OmpR family, response regulator CpxR
           [Neisseria gonorrhoeae F62]
 gi|304337843|gb|EFM03989.1| response regulator [Neisseria meningitidis ATCC 13091]
 gi|308388781|gb|ADO31101.1| DNA-binding response regulator [Neisseria meningitidis alpha710]
 gi|316985249|gb|EFV64200.1| transcriptional regulatory protein cpxR [Neisseria meningitidis
           H44/76]
 gi|317163588|gb|ADV07129.1| putative two-component system transcriptional response regulator
           [Neisseria gonorrhoeae TCDC-NG08107]
 gi|325127715|gb|EGC50626.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis N1568]
 gi|325129767|gb|EGC52576.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis OX99.30304]
 gi|325131952|gb|EGC54652.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis M6190]
 gi|325133888|gb|EGC56544.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis M13399]
 gi|325135809|gb|EGC58421.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis M0579]
 gi|325137623|gb|EGC60200.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis ES14902]
 gi|325139853|gb|EGC62385.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis CU385]
 gi|325141850|gb|EGC64295.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis 961-5945]
 gi|325144018|gb|EGC66328.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis M01-240013]
 gi|325197808|gb|ADY93264.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis G2136]
 gi|325200718|gb|ADY96173.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis H44/76]
 gi|325202610|gb|ADY98064.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis M01-240149]
 gi|325203688|gb|ADY99141.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis M01-240355]
 gi|325206556|gb|ADZ02009.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis M04-240196]
 gi|325207640|gb|ADZ03092.1| putative transcriptional regulatory protein CpxR [Neisseria
           meningitidis NZ-05/33]
          Length = 225

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD AL+ +        +G+++      E       S + DV  +++ +       L+
Sbjct: 5   LLVDDDALLTELLTEYLSAEGLNVRSVPDGEAGVQEILSGQYDVVVLDSMMP--KMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +RA S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR + S
Sbjct: 63  VLKNVRARSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQHS 122

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI--- 173
                  N      + ++   R   V+     L   E  +LE LM + G+ V+K  +   
Sbjct: 123 GEQNNAPNSISVSDVVLYPAKRQASVKDMPLELTSTEFNLLEVLMRHAGQVVSKETLSVE 182

Query: 174 -FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-----RSIDVHISSIRHKLGDA---SLIQTVRGLGYLFVKN 225


>gi|83745711|ref|ZP_00942769.1| Hypothetical Protein RRSL_04779 [Ralstonia solanacearum UW551]
 gi|83727788|gb|EAP74908.1| Hypothetical Protein RRSL_04779 [Ralstonia solanacearum UW551]
          Length = 288

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 17/230 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-------EWLQSSAREDVSAIEAFLIG 55
           +L++D  ++ +        DG +++     E             ++A    S  +  L+ 
Sbjct: 46  LLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAVGAPGAAAAAAESSASMFDLMLLD 105

Query: 56  KGE---KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
            G      L++   +R     +P++ ++   ++   +   ++G DD + KP   +E+ AR
Sbjct: 106 LGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAAR 165

Query: 112 VAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ RR     +     G + +    R+    G    L  RE  +L  L++  GK  + 
Sbjct: 166 MHALLRRQGGRADPLMRHGDVLLNPVTREVLRAGVPVKLSGREFAVLHALLSRPGKVWSI 225

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   +YG +DE V  N VE +I  LRKKL +      + + R +GY I
Sbjct: 226 AQLQDNLYG-WDEEVGSNTVEVYIHALRKKLGSHF----IQNIRGVGYVI 270


>gi|326314873|ref|YP_004232545.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371709|gb|ADX43978.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 237

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------ 55
            ++++D A+++        D G  ++   +L   +        D   ++  L        
Sbjct: 3   ILVVEDDAVLRGVMQRSLADAGHRVDVAATLAEADHFWKVQPFDAVLLDLNLPQDAAQAS 62

Query: 56  KGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                L + R  RA     P++ ++     +  +   D+G DD + KP    E+ AR+ A
Sbjct: 63  PVGSGLAVLRAARARGDRTPVLVLTARDRTEERIAGLDAGADDYLGKPFDLAEVEARLRA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + RR + +++R   G + +    R   + G+ F LP RE  +L  LM   G+ V+K  + 
Sbjct: 123 LVRRTQGTDDRTSAGTLVLDRRARRFTLHGQPFELPAREFEVLWELMTPPGRVVSKRSLS 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +   FD+ + +N +E+ IS+LRKKL+       + + R LGY ++
Sbjct: 183 DKL-SDFDDMLGDNALEAFISRLRKKLQGSGAG--IRTLRGLGYMLE 226


>gi|260772017|ref|ZP_05880934.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
 gi|260612884|gb|EEX38086.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
          Length = 228

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + +    +   +G  +   N  +      ++  +++  I   ++      +
Sbjct: 4   ILLIDDDTELTNLLKEVLSYEGFDVSEANDGQSG---LAALNDEIDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R +   P++ ++        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 61  ETLKRLRENWTTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQH 120

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 ++  E   I+V+   ++   QG++  L   E  +L +   N G+ + K  +   
Sbjct: 121 QSVHKPSDVIECQDIQVYPGKQEAYCQGQLLDLTTTEFALLGHFAQNPGETLTKEMLSLD 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           + G    A +   ++ H+S LRKKL     G   + + R  GY
Sbjct: 181 VLGKRLAAFD-RAIDMHVSNLRKKLPERVDGKPRIKTLRGRGY 222


>gi|255281933|ref|ZP_05346488.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255267606|gb|EET60811.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 237

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++G   L   +  ++    +      L  +A  D+  ++  +   G   +
Sbjct: 6   ILIIEDDPDIREGVRILLEGEDYTVTEAENGRKGLELL-NAETDLVILDVMMP--GMSGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S VP++ ++        L    +G DD + KP  + E+L RV A+ RR +V
Sbjct: 63  RTCEEIRKVSNVPVLFLTAKSQESGKLIGLMAGGDDYLPKPFSYSELLGRVKALLRRYRV 122

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +           E   +RV     D EV+G+   L   E ++L  +M   GK  +  
Sbjct: 123 YRGKKEDDEDADACLEMAGVRVHKVFNDVEVRGKKVDLSDIEYQMLLLMMKYPGKIFSAQ 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++ +++         + V  HI KLR K+  N      + +    GY  
Sbjct: 183 NLYESVWDEPYFYTCNSTVMVHIRKLRVKIEENPQEPRLIQTVWGKGYRF 232


>gi|219523854|gb|ACL14890.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
          Length = 224

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++        ++  +    D++ ++  L    E  L 
Sbjct: 5   LVVEDNALLRLHPKVHLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPD--EDGLS 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R+    +P++ ++     Q  ++   SG DD V KP H  E++AR+ A+ RR   
Sbjct: 63  LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +++      P +V    R+  V  EV  L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 123 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY-P 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK++ +   D + + R  GY  +
Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGYLFE 222


>gi|119492095|ref|ZP_01623548.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119453305|gb|EAW34470.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 222

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +         D+G                   + ++  ++  L   G +  
Sbjct: 4   ILIAEDEPHIAAFLDKKLRDNGFITTIAEDGYEALNQVRHEQYNLLILDLGLP--GIEGT 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R   + +P+I ++    +   +   + G +D V KP    E+LAR+    R+  
Sbjct: 62  EVLEELRGQGEEIPIIILTARDEVGDKVSGLEGGANDYVTKPFSFEELLARIRLQLRQPS 121

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               +AE     G I +    R   V      L   E  +L+ LM +  + +++ QI + 
Sbjct: 122 TPEPKAERFLKVGNITLDIRSRTVMVGDRRVELSNYEFILLDTLMRHPDQVLSRDQILNY 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N+V+ +I  LRKKL      + +++ R +GY +
Sbjct: 182 VWG-YDYDSSSNIVDVYIGYLRKKL----NRNLIETVRSVGYRL 220


>gi|294138932|ref|YP_003554910.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12]
 gi|293325401|dbj|BAJ00132.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12]
          Length = 241

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R     +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQS 125

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 QDVPGAPTQQEEEVTFGEFTLNLATREMYHDEEAISLTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|284035664|ref|YP_003385594.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283814957|gb|ADB36795.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 231

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V            +++         + L SS R D+  ++  L       L
Sbjct: 9   LLVVEDETKVALFIKKGLETQSLTVTVAADGREGKRLISSERFDLVILDVNLPFV--SGL 66

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL   IR  ++Q+P++ ++   S    L  F++G DD + KP    E++ARV A+ RR  
Sbjct: 67  ELAEYIRTKNAQMPILMLTALDSTTDKLMGFEAGADDYLAKPFDFLELVARVRALLRRSA 126

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S        + +    +     G    L  RE  +L+YL+ N+G+ V++  I   +
Sbjct: 127 PPEESQPILRLADLELDRQQKVARRAGRTIDLTAREFALLDYLLRNQGRVVSRVDIAEQV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +       NV++ +++ LR K+        + +    GY +
Sbjct: 187 WDVG-FDTGTNVIDVYVNYLRNKIDKGEPVKLIHTVVGFGYVL 228


>gi|167621347|ref|ZP_02389978.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
          Length = 236

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 6   ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPR--MPGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 64  DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLC- 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 183 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLE 222


>gi|290352169|dbj|BAI78795.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VC-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|253989214|ref|YP_003040570.1| DNA-binding transcriptional regulator PhoP [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780664|emb|CAQ83826.1| two-component response regulator phop [Photorhabdus asymbiotica]
          Length = 222

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        D G  ++   + +  ++  + +  D++ ++  L   GE  L
Sbjct: 3   ILIVEDNMLLRHHLTVQLRDTGHLVDAAANAKEADYYLAESEPDIAIVDLGLP--GEDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  R   + +P++ ++   S Q  +   D+G DD V KP H  EI+AR+ A+ RR  
Sbjct: 61  SLIRRWRQKDEKLPILVLTARESWQEKVTVLDAGADDYVTKPFHLEEIIARMQALLRRNN 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   E  P R+    ++  + GE   L   E +I+E LM N  K V K  +   +Y 
Sbjct: 121 GLVSQIIEFPPFRIDLSRKELTIYGESVKLTAFEYKIVEILMCNSDKIVTKESLMRQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              E  E + ++  I +LRKK+++   ++ + + R  GY  D 
Sbjct: 180 SDAELREGHSIDVLIGRLRKKIQDVWPYEAIVTVRSQGYRFDV 222


>gi|152981344|ref|YP_001351979.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281421|gb|ABR89831.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 246

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 5/224 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D             + G              L      DV  ++  L  +G   L 
Sbjct: 5   LIIEDDTHNALYIAKGLKEIGYEATVCADGIEGMELAVGGEWDVIILDRMLP-QGMDGLS 63

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +R    + P++ +S   ++   +    +G +D + KP    E+ ARV A+ R  + 
Sbjct: 64  ILAALREMGKRTPVLILSALSAIDERVRGLQAGCNDYLTKPFAFPELAARVEALLRWTQP 123

Query: 122 SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    E     ++V    R  E  G    L  RE R+L Y+M ++G+ + +T +  +++ 
Sbjct: 124 NEVIRELCVEDLKVNLLTRSVERGGRPLSLQPREFRLLVYMMTHKGQVLTRTMLLESVWN 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +    + NV+++HIS+LR K+        + ++R LGY +  N
Sbjct: 184 -YQFDPQTNVIDAHISRLRNKVDKGFAVPLIHTRRNLGYILTPN 226


>gi|329939961|ref|ZP_08289243.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329300787|gb|EGG44683.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 228

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEK 59
            +L++D   V     A+    G  +    S E         SA  DV  ++  L  +   
Sbjct: 3   LLLVEDDNHVAAALSAVLARHGFEVTHARSGEEALRALVPESAGFDVVLLDLGLPDQ--D 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR 
Sbjct: 61  GYEVCGKIRKRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRT 120

Query: 120 KVSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +++          G + +    R   V G    L R+E  +L  L    G    + QI
Sbjct: 121 PHTDDTGNVETALRLGAVHIELPTRQVRVDGTPVQLTRKEFDLLALLAQRPGVVFRREQI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            S ++    E      +E H++ LR KLR       +++ R +GY +
Sbjct: 181 ISEVWQTSWEGTG-RTLEVHVASLRSKLRMPA---LIETVRGVGYRL 223


>gi|167033487|ref|YP_001668718.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859975|gb|ABY98382.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 233

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + + +   +    +   ++     +         + D+  ++  L   G   L
Sbjct: 4   ILLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQKPDLVILDLMLP--GIDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R++R  SQ +P++ ++        +   + G DD V KP   R +LARV  + RR  
Sbjct: 62  QLCRLLRQESQSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V+  R +      G +R+    R    +GE   L   E  +L  L  N G+ + + +I  
Sbjct: 122 VNEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY---SIDW 222
            + G+ +    +  V+  ISKLR+K  +  G    + +    GY    ++W
Sbjct: 182 QLRGI-EFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEW 231


>gi|325679778|ref|ZP_08159352.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324108593|gb|EGC02835.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 228

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +    G   +     E    L       +  ++  L        
Sbjct: 6   ILIVDDEQELSGIIAEMLAGCGYDTDTAADSEHAYSLLGQKNYHLILLDINLPD--GTGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP+I  S   +    ++ FD G DD + KP   +E+L+RV A+ RR   
Sbjct: 64  EICRQLREASHVPVIFASARTAEDDRINSFDIGGDDYLQKPYSMKELLSRVNALMRRAYG 123

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G +++ +  R     G    L +RE  +L  L  N+   V K ++ S ++G
Sbjct: 124 GEVDGSLGFGDVKINTASRTVIKGGRNVALAQREFDLLCCLCRNKNTAVPKDKLISEVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            F E VE + +  HI  LR+KL  +      + +   LGY ++
Sbjct: 184 AFSE-VEPSTLTVHIRWLREKLEDDPAAPVYIKTVWRLGYMLE 225


>gi|197302707|ref|ZP_03167761.1| hypothetical protein RUMLAC_01437 [Ruminococcus lactaris ATCC
           29176]
 gi|197298289|gb|EDY32835.1| hypothetical protein RUMLAC_01437 [Ruminococcus lactaris ATCC
           29176]
          Length = 228

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 102/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +         + G ++   ++ L   ++L +  + D+  ++  L  +   +
Sbjct: 4   ILIIEDDLEINALLADFLKEKGYAVHCQYDGLHVLDFL-NKEKIDLIILDIMLPYRSGDI 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +     +R    +P+I IS   + Q  +D    G DD + KP    E+LAR+ +  RR++
Sbjct: 63  I--LSDVRKKFTIPVIIISAKETTQNKIDLLRLGADDYITKPFDMEEVLARIESNLRRVQ 120

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             N++ E      + +  +     + G    L  +E  ILE LM    K  +K+ +F ++
Sbjct: 121 FQNSQTECLQYNNLTLDLEKNTAFLNGIELSLTAKEFGILELLMKYPDKVFSKSNLFQSV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           +   +   E+N +  HIS LR KL+      + +D+   +GY +
Sbjct: 181 WDT-EYIAEDNTLNVHISNLRNKLKAICSDTEFIDTVWGIGYRL 223


>gi|86146208|ref|ZP_01064533.1| probable two-component system response regulator (Pho family
           protein) [Vibrio sp. MED222]
 gi|85835919|gb|EAQ54052.1| probable two-component system response regulator (Pho family
           protein) [Vibrio sp. MED222]
          Length = 224

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +    +  F  +G+++              +   DV  ++  L  K     
Sbjct: 3   ILLIEDDIHIARFLVNGFQQEGITVTHATDGVDGLHEAVTEEYDVIILDIMLPKK--DGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P+I +S   S++  +    SG DD + KP    E+LAR   + RR K
Sbjct: 61  EVLAELRGQGYATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLVRRGK 120

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      GP+ +       +   +   + +RE  +++ L+ NR   ++KT I   +
Sbjct: 121 QPTTQPLELHYGPLSLDLLKHTLQRDQQTITINQREFMLMKLLLENREAVMSKTAILEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G      + NVV+  + +LR K+        + + R +GY +
Sbjct: 181 WG-HQFDPQTNVVDVLVCRLRSKVDKGFSKPLIHTLRGVGYVL 222


>gi|332652639|ref|ZP_08418384.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332517785|gb|EGJ47388.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 225

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 3/210 (1%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
                +    DG ++   ++    + L  + R D+  ++  L       L+L    R   
Sbjct: 14  GQAVKSALEQDGHAVALAHNAAQAQKLWQAVRFDLCLLDIRLPD--GSGLDLCAGFRQAR 71

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131
             P+I ++   + +  +  F  G DD V KP     +  RV A+ RR            +
Sbjct: 72  DTPVIFLTANDADEDVVRGFQMGGDDYVTKPFAPEVLRQRVLAVLRRTGSGAQIIRYQEL 131

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +  + +    QGE   L   E ++LE L  +RG+ + +T +   I+ +    ++EN + 
Sbjct: 132 EIDLERQTVRRQGETIHLTATEWKLLERLARSRGRVLTRTMLLEQIWDVEGSFIDENTLS 191

Query: 192 SHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            HI +LR+KL  +      V +   LGY+ 
Sbjct: 192 VHIRRLRQKLEPDPKNPRYVVTVFGLGYTF 221


>gi|298370116|ref|ZP_06981432.1| DNA-binding response regulator CpxR [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281576|gb|EFI23065.1| DNA-binding response regulator CpxR [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 225

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD AL+ +        +G+++      E       + + DV  +++ +       L+
Sbjct: 5   LLVDDDALLTELLTEYLTAEGLNVHSVPDGEAGVHEILTGQYDVVVLDSMMP--KMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + + +R+ S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR +  
Sbjct: 63  VLKNVRSQSTVPVIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQRG 122

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI--- 173
                + N      + ++   R   ++ E   L   E  +LE LM + G+ V+K  +   
Sbjct: 123 GEQNSAPNSISVSDVVLYPAKRQATIREEPLELTSTEFNLLEVLMRHAGQVVSKETLSIE 182

Query: 174 -FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-----RSIDVHISSIRHKLGDA---SLIQTVRGLGYLFVKN 225


>gi|289523923|ref|ZP_06440777.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502579|gb|EFD23743.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 236

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 95/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  +      +    +   +  D+  ++  L        
Sbjct: 6   ILLVEDEENIASLVSQYLSMQGYEIIKAADGDRALEICYESLPDLIILDLMLPI--MDGW 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R ++       +P+I ++     +  ++  + G DD V KP    E+ AR+  I RR
Sbjct: 64  EVCRRLKKDPITKDIPIIILTARRDERDVIEGLELGADDYVKKPFSLAELHARIKTILRR 123

Query: 119 LKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              +   N   + G + + +D      +     L   E  +++ LM N  K V++ Q+ +
Sbjct: 124 AHPASPQNETIKLGKLELIADADILTYEDIKIVLTPIETELIKILMKNAPKIVSREQLLA 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            ++G +    E   ++ HIS+LR K++   L F+ +++ R  GY +
Sbjct: 184 KVWGTY--LGETRTIDVHISRLRTKVKKAGLNFNLIETVRHRGYRL 227


>gi|160896325|ref|YP_001561907.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361909|gb|ABX33522.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 224

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 108/223 (48%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG +      G  +    N  E +  L +S+  D+  ++  L       
Sbjct: 3   ILIAEDDQVLADGLLRSLRGSGAVVSHVANGSEADTALMTSSEFDLLILDLGLP--KMHG 60

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +R     +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 61  LEVLKKLRGRGDALPVLILTAADSVEERVQGLDYGADDYMAKPFALSELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +++  + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGGASSTIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              DE V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 EWGDE-VSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220


>gi|257069251|ref|YP_003155506.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256560069|gb|ACU85916.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 231

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 93/226 (41%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +L++D + + +        +G ++   +       + + A   D+  ++  L       
Sbjct: 4   LLLVEDDSAIAEPLSRALDREGYTVTRASRGMDALGIAAGAESIDLVILDLGLPD--LDG 61

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LE+ R +R    + P++ ++        +   D+G DD V KP    E+ AR+ A+ RR 
Sbjct: 62  LEVARRLRKGGLECPILILTARADEVDAVVGLDAGADDYVTKPFRLGELQARIRALMRRS 121

Query: 120 KV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    S +  +   + +    R     GE   L  +E  +L  L+   G  V +  +   
Sbjct: 122 QATEESGDSYDVNGVTLDVSARRAYADGEELSLSAKEYDLLTVLVRESGSVVTRDDLMRE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           ++G  +       ++ HIS LR+KL  +      + + R +G+  +
Sbjct: 182 VWGA-EWWGSTKTLDMHISWLRRKLGDDATDPRRITTVRGVGFRFE 226


>gi|163783571|ref|ZP_02178561.1| two component transcriptional regulator, winged helix family
           protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881191|gb|EDP74705.1| two component transcriptional regulator, winged helix family
           protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 225

 Score =  211 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L+ D        +G      ++         + + DV  ++  L        
Sbjct: 5   ILIVEDDPLIADMLKRYLEKEGFKTYWDSTGAEAVKSFETLKPDVVILDLMLPDT--DGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL ++  +   + L+ ++   + +  +   + G DD + KP + RE+LARV A+ RR K 
Sbjct: 63  ELCKLFSSTDSM-LLILTARDADEDKIVGLELGADDYITKPFNMRELLARVKALLRRRKK 121

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +S      G + + +      ++G +  L  +E  IL+ L++ RGK V++ +I S IY
Sbjct: 122 LSLSGETLRVGELEIHTGEMKVLLKGRLVDLTPKEFLILKKLLSKRGKVVSREEIVSEIY 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSID 221
              D    E +V+++I ++R KL        + + + R  GY  +
Sbjct: 182 -SGDIPYYERIVDTYIYRIRTKLMEIERSYAERIKTVRGFGYRFE 225


>gi|294499648|ref|YP_003563348.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
 gi|294349585|gb|ADE69914.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
          Length = 230

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F  +G  ++  +  E      +S R DV  ++  +        
Sbjct: 5   ILVVDDEKSIATAVSYAFKREGYIVDTASDGEEALEKVTSFRPDVMILDVMMP--KLTGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +     + +I ++    +   +   + G DD + KP   RE++AR  A+ RR++ 
Sbjct: 63  EVCRKLENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRRMEK 122

Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +           G ++V    R   V  ++  L  +E  ++  L+AN  +   +  +   
Sbjct: 123 NEAPEAVGEITVGKVKVNLIQRTLHVANDLVKLTPKEFDLIALLLANLERVYTREDLLDL 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G+ D A     V+ H+ +LRKK+        + +   +GY 
Sbjct: 183 VWGM-DYAGGTRTVDIHMQRLRKKVGEA-EPYLLQTVYGVGYK 223


>gi|319796546|ref|YP_004158186.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315599009|gb|ADU40075.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 224

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 111/223 (49%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ D  +      G +++   N  + +  L + +  D+  ++  L       
Sbjct: 3   ILIAEDDQVLADALLRSLRTSGAAVDHVANGSQADTALMTHSEFDLLILDLGLPS--LHG 60

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +E+ + +RA  SQ+P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  IEILKRLRARGSQLPVLVLTAADSVEERVKGLDHGADDYMAKPFSLQELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  ++N    GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGATSNAIRHGPLVYDQAGRVATIDGKMIELSARELGLLEVLLQRAGRLVSKDQLVDRLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 -EWGEEVSLNAIEVYIHRLRKKIEK--GPVRIATVRGLGYCLE 220


>gi|83594517|ref|YP_428269.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577431|gb|ABC23982.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 229

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +      +    G +++  +  E   +L  +   D   ++  L       + 
Sbjct: 4   LLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPR--LDGIG 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R  RA    VP++ ++        +  F++G DD V KP    E++ R+ A+ RR   
Sbjct: 62  VLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAAG 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     GP+R+ +      V+G    L  +E +IL YL+  +G+ V+++ I   +Y  
Sbjct: 122 HPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYDR 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D   + NV++  + +LR+KL    G   + + R LGY ++
Sbjct: 182 -DSDRDSNVIDVLVGRLRRKL----GAPLIHTVRGLGYRLE 217


>gi|329296470|ref|ZP_08253806.1| DNA-binding transcriptional regulator CpxR [Plautia stali symbiont]
          Length = 232

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   DG  +   +  E    L  +   D+  ++  +  K    +
Sbjct: 4   ILLVDDDRELTSLLKELLEMDGFEVIVASDGEQALNLLDNT-VDLLLLDVMMPKK--NGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  DTLKELRQQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S  +          E   +R+    ++     E   L   E  +L  L  + G+ V++  
Sbjct: 121 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDSETLDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   + G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPERRDGHPWFKTLRGRGY 226


>gi|291617790|ref|YP_003520532.1| BasR [Pantoea ananatis LMG 20103]
 gi|291152820|gb|ADD77404.1| BasR [Pantoea ananatis LMG 20103]
          Length = 228

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL+  G +      G   +G +++   E   +S    +  ++  L    E  L
Sbjct: 3   ILIVEDDALLLQGLVLALEGAGYVCDGVSTVRSAEAHLASGLYSLVVLDIGLPD--EDGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L + +R   Q+ P++ ++   +++  +   D+G DD + KP    E+LAR+ A+ RR +
Sbjct: 61  HLLQRLRRQKQMQPVLILTARDTIEERIAGLDAGADDYLIKPFALDELLARIRALIRRHV 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++R E G + +    R   +   +  L  +E  IL  LM   G  V +  ++  IY 
Sbjct: 121 NQGDSRLEVGNLSLDMTHRQIHLDDVLLDLTPKEFSILSRLMLKAGHPVHRELLYQDIYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD     N +E HI  LR    +K+G   + + R  GY++
Sbjct: 181 -FDNEPSTNTLEVHIHNLR----DKVGKATIRTVRGFGYAL 216


>gi|226954227|ref|ZP_03824691.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
 gi|294650125|ref|ZP_06727506.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|226835034|gb|EEH67417.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
 gi|292823975|gb|EFF82797.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 219

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D A   +        DG S++     +         + D   ++  L        
Sbjct: 3   ILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVEQHQYDCVLLDRGLPKA--SGD 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR  + + P+I I+    +   ++  D G +D + KP +  E+ ARV +  R+ +
Sbjct: 61  QILKSIRQRNLKTPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARVRSQLRQHQ 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V   +  +   +++    +      +   L  +E +IL  LM        + Q+  ++Y 
Sbjct: 121 VDAGQYLKFADLKLDPQAKTLSQAEQTVNLTAKEFQILYKLMQKPDHIFTREQLEESLYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE +E N +E  I ++RKK+    G   + + R LGY +
Sbjct: 181 WGDE-IESNAIEVFIYQIRKKI----GGQYIKTVRGLGYRM 216


>gi|307293762|ref|ZP_07573606.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879913|gb|EFN11130.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 239

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++      G +G  +    +        ++   D+  ++  +   GE  L
Sbjct: 7   LLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARMRLNANAIDLVILDIMMP--GEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S++P+I ++        +   + G DD V KP   RE++AR+  I+RR+  
Sbjct: 65  SLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRRVAT 124

Query: 122 SNNRAE--------TGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              R               + +  R   + +G   PL   E  ++        + +++ Q
Sbjct: 125 GGQRVTAPDGATYAFANWLLKTQERTLVDSEGVALPLSTAEYNLMLAFATRPNQVLSRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   I    +    +  +++ IS+LRKK+  +      + +    GY++
Sbjct: 185 LLD-ITQGREANAFDRAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTL 232


>gi|238763220|ref|ZP_04624185.1| Transcriptional regulatory protein creB [Yersinia kristensenii ATCC
           33638]
 gi|238698493|gb|EEP91245.1| Transcriptional regulatory protein creB [Yersinia kristensenii ATCC
           33638]
          Length = 232

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L++D   + D  I     +G +L  F+  +      +     ++ ++  L       
Sbjct: 4   LIWLVEDEPSIADTLIYTLESEGFTLRWFDRGQPALAALADGPPALAIVDVGLPD--ING 61

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +L R I A   ++P++ ++        +   + G DD + KP   RE+ ARV  + RRL
Sbjct: 62  FDLCRRILALVPELPVVFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTVLRRL 121

Query: 120 KVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + S  RA      + GP  +   G       +V  L R E  +L+ L+    +  ++ Q+
Sbjct: 122 QKSQTRAVSATLHQFGPFTLDEAGARVTYHQQVLWLTRYEYLLLKTLLLAPERVFSRQQL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
              ++   +E+ ++  V++HI  LR KLR       P+ + R LGYS+
Sbjct: 182 MDIVWAQAEES-QDRTVDTHIKTLRSKLRMIRDEESPIRTHRGLGYSL 228


>gi|119944977|ref|YP_942657.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
 gi|119863581|gb|ABM03058.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
          Length = 218

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  +      G +++        E    +       ++  L       L
Sbjct: 3   ILLVEDDVMLGESMVVSLIRHGYTVDWLQLGAAVEMTLRTENFTAIILDLTLPDA--DGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++   +R A  ++P++ ++    +   +   D G DD + KP   +E+LAR+  I RR  
Sbjct: 61  DILSQVRKAGHKLPILILTARDDIDDRVKGLDGGADDYLLKPFALQELLARLRVIVRRVS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + ++ E   + +       E  G    L   E ++L  L+   G+ ++K  +   +YG
Sbjct: 121 GYAESKIELHGLVISLAKNTVEYHGAAIKLTNTEFKLLTTLVTKAGRVLSKEYLQQTLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +DE   +N +E +I  LRKK+ N+L    + + R +GY I+
Sbjct: 181 -WDEMASDNAIEVYIHNLRKKINNQL----IKNIRGVGYIIE 217


>gi|255305493|ref|ZP_05349665.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 224

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD   +       F  +G  +  + +   ++ L+  ++  D+  ++  +       
Sbjct: 5   ILVVDDEEGIITLLKDYFEMNGYEV--YTAQSGKDALKKISKNPDIILLDINMPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+   IR +   P++ ++        ++ F +G DD + KP    E+ ARV+A  RR +
Sbjct: 61  IEVCNRIRDYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRREQ 120

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +N+ +      + +  + R   +      L ++E  I+E L  N G+   K +I+  +
Sbjct: 121 RKSNQTKIKFYNGLTIDYEKRLICIDNNQISLSKKEFDIVELLSMNPGQVFDKEKIYDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G ++     +V+  HI K+R KL      + +++   +GY 
Sbjct: 181 WG-YNSNGNSDVIMEHIRKIRIKLSKHTLENYIETVWGVGYK 221


>gi|329850817|ref|ZP_08265662.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
 gi|328841132|gb|EGF90703.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
          Length = 224

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD+A   D         G  +    +     +       D   ++  L   G+  L
Sbjct: 3   ILVADDQAETADFIRRGLSQAGHVVATVGTGTEALFRAMEESFDAIVLDRMLP--GKDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +++RA     P+I ++    +   ++  ++G DD + KP    E+ AR+  I RR  
Sbjct: 61  SVLKMLRAGGNRTPVILLTAMGGISDRVEGLENGADDYLTKPFALSELSARLNVIMRRPA 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V         G I +    R     G+   L  RE  +LE LM N  + + K  +   ++
Sbjct: 121 VVEVETILRVGNIEMDLRKRTVHRAGKRIELQPREVLMLEELMRNVHRVMTKAMLLERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD     N+VE+HIS+LR KL      D + + R  GY I
Sbjct: 181 D-FDFDPHTNIVETHISRLRAKLNAGFDDDAIITVRGAGYMI 221


>gi|295676683|ref|YP_003605207.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295436526|gb|ADG15696.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 219

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+  G  A     G +++             + +  +  ++  L        
Sbjct: 3   LLLVEDDELIGCGVEAGLRQAGFTVDWARDGHKASLALDTTQYALVVLDLGLPRV--SGT 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R A + VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR +
Sbjct: 61  ELLKRMRDAGNDVPVLVLTAKGTVVDRVGGLEAGADDYLGKPFDLTELVARCRALLRRAQ 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      + V    +  ++     PL  RE  IL  L+ N G   +++++  ++YG
Sbjct: 121 GRSIDLIRYQNLTVNPAAQTVQIDEARVPLTSREWAILLQLLTNLGIPQSRSRLEESLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E +E N +E H+S LRKKL    G + + + R +GY ++
Sbjct: 181 -WQEEIESNAIEVHVSNLRKKL----GANLIKTVRNIGYVME 217


>gi|298491352|ref|YP_003721529.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233270|gb|ADI64406.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 233

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++  +  F      +E     +    L       +  ++  L        
Sbjct: 6   IMIVDDDFSVRN-LVYRFLSRKYRIESAADGKSAMALFEQFNPALVILDWNLPDV--NGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L + +++ + V ++ ++        +    +G DD + KP    E+  RV A+ RR++ 
Sbjct: 63  KLCQEMQSRTNVLVLILTSRNDEADKISVLAAGADDFMTKPFSLAEVEVRVEALLRRIRY 122

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                + R     + +  +GR+  +  +   L   E  IL +L ++ G+  ++ Q+   I
Sbjct: 123 IHPSQSQRLVFKQLAINPEGREVTLNDKPLALTALEFNILHFLASHPGQAWSRPQLIQKI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +G  D   +  VV+ HI +LRKK+  +    + + + R  GY  +
Sbjct: 183 WGC-DYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKFE 226


>gi|307131191|ref|YP_003883207.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Dickeya dadantii 3937]
 gi|306528720|gb|ADM98650.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Dickeya dadantii 3937]
          Length = 222

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++     +  ++       D++ ++  L    E   
Sbjct: 3   ILVVEDNVLLRHHLNVQLNEMGHQVDAAADAKEADYFLQEHAPDIAIVDLGLPV--EDGT 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  RAH  ++P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRWRAHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  V    R+  V G+   L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQIISLPPFEVDLSRRELLVHGDPVKLTAFEYTIIETLIRNNGKVVSKESLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKKL+     D + + R  GY  D
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQTANSHDVITTVRGQGYRFD 221


>gi|284035840|ref|YP_003385770.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283815133|gb|ADB36971.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 223

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +       F  +   +      +    L  +   DV  ++  L        
Sbjct: 3   LLVVEDDQKLASFISKGFEAEAFEVTIAPDGQAGWRLFQANPYDVVILDVNLPY--LNGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL R IR  +  VP++ ++    L    + F SG DD + KP   RE+L RV A+ RR  
Sbjct: 61  ELCRYIRQQTNEVPVLLLTALDGLNDKAEGFGSGADDYLCKPFEFRELLWRVQALTRRHY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      +   + +  D R     G+  PL   E  +LEYLM NRG+ V++  I   ++ 
Sbjct: 121 RERQRVLQVADLVLDPDARQVIRGGKHIPLTSHEYALLEYLMRNRGQVVSRVDIAERVWE 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + A   NV++ ++  LRKK+        + +   +GY +
Sbjct: 181 V-NLATSTNVIDVYMGYLRKKVDRDFASKLLHTVVGMGYVL 220


>gi|269128318|ref|YP_003301688.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313276|gb|ACY99650.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 223

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G ++E   S +  + L+ +    V  I   L       LE
Sbjct: 5   LLAEDDTSISEPLARALRREGYTVEV--SPDGPQALERALGGGVDLIVLDLGLPELDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R+    VP++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRVRSEGHGVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGST 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   +R+ ++ R   +  +   L  +E  +L  L+ + GK V + QI   ++   
Sbjct: 123 ETPIVQ--GVRIDAESRRAWMGDQELQLTTKEFDLLRVLVRDAGKVVTREQIMREVWDT- 179

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +       ++ HIS LR+KL  +      + + R +G+  +
Sbjct: 180 NWWGSTKTLDMHISWLRRKLGDDAANPRYITTVRGVGFRFE 220


>gi|262395429|ref|YP_003287282.1| transcriptional regulator [Vibrio sp. Ex25]
 gi|262339023|gb|ACY52817.1| transcriptional regulator [Vibrio sp. Ex25]
          Length = 220

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 102/223 (45%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E  +     +      + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECLHVERIADVEPQWKKADLVILDRQLPD-GDSVQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            LP   +    VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  R    
Sbjct: 62  CLP-EWKQIKDVPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQLRAPDS 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S ++  T  + +    R+   + E+  L R E  +L +L +N G+   + ++   +
Sbjct: 121 AEQSSADKVITKDLEIDRSTREVTYKDELITLTRTEFDLLLFLASNLGRVFTRDELLDHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 WG-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 218


>gi|330718114|ref|ZP_08312714.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 228

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D  I  F  D   ++        E+       D+   +  L   G+  L
Sbjct: 7   ILLIEDDVNLADS-IVGFLQDFSDVKVVEDGLDGEFEAQEVPYDLVISDLMLP--GQDGL 63

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R    + P++ ++   SL   ++ F+ G DD + KP +  E+L RV A+ RR  
Sbjct: 64  TIIKNLREKEIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRSG 123

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V   +N  E G + +  + R  +V G+   L  +E  IL YL  N+   + + QIF  ++
Sbjct: 124 VFSEDNTIEVGDVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIITREQIFDRVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G+ D     NVV  +++ LR+KL      + + + R +G+ ++ 
Sbjct: 184 GI-DSDTTINVVNIYLNNLRRKLEAVGQDNLIKTLRNIGFILEV 226


>gi|311107856|ref|YP_003980709.1| transcriptional activator protein IrlR 4 [Achromobacter
           xylosoxidans A8]
 gi|310762545|gb|ADP17994.1| transcriptional activator protein IrlR 4 [Achromobacter
           xylosoxidans A8]
          Length = 229

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   + +       +    ++          L   ++ D+  ++  L         
Sbjct: 4   LVIEDEKKLAEYLRRALTEHNYVVDVALDGVTGLHLVRESQYDLVLLDVMLPA--MDGFS 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           +   IR  S+VP++ ++    L+  +     G DD + KP    E+LARV A+ RR    
Sbjct: 62  VLAEIRKTSRVPVLMLTARDKLEDRVKGLRDGADDYLAKPFALSELLARVLALGRRSGHG 121

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++ N      + +    R     G    L  +E  +L  LM  +G+ +++ ++   
Sbjct: 122 QTETIAQNVLRIDGLELDLLRRRASRDGVRLDLTAKEFTLLALLMRKQGEVLSRLELAEQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +     NVVE  I +LR K+        + + R +GY ++
Sbjct: 182 VWDI-NFNSNTNVVEVAIRRLRGKVDEPFDKKLLHTVRGMGYVLE 225


>gi|290352199|dbj|BAI78810.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEDEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D   DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRSADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|260494215|ref|ZP_05814346.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
 gi|260198361|gb|EEW95877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
          Length = 227

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++          G  ++     E    L +    DV  ++  L  K     
Sbjct: 7   ILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGMELFTKNYYDVILLDLMLPKK--SGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +  R  +  P+I I+   S+   ++  D G +D + KP    E+LAR+    R  + 
Sbjct: 65  ELCQEFRKLNNTPIIIITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 124

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S ++       I++    +   ++ E   L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 125 SVDKQFYLEKDIKLDLSAKRVYLREEEVNLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   EE +V+ +I+ LRKK+   +    + + R  GY   +
Sbjct: 185 -YDFDGEEKIVDVYINSLRKKID--VDNKYIHTIRGFGYMFQY 224


>gi|262201296|ref|YP_003272504.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084643|gb|ACY20611.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 223

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   V +        DG ++   +      W  +    DV  ++  L   G     
Sbjct: 4   LVVDDDPGVAETVRRALVSDGWAVTVAHDGVDGLWKATEGSHDVIVLDIMLP--GHNGYV 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R +RA     P++ ++         +  D+G DD + KP     + A + A+ RR ++
Sbjct: 62  VVRELRARGIWTPVVMLTAKDGEYDQAEALDAGADDYLVKPFSVVVLKAHLRALLRRGVR 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R   G + V               L  RE  +LEYL+ N    V+K +I  +++  
Sbjct: 122 ERPARLVAGDLVVDPAEHTVTRGQTPITLTPREFAVLEYLIRNADTVVSKCEIVRSVWDE 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   + N+VE ++  LRK++    G   +++ R  GY +
Sbjct: 182 -NFDGDANIVEVYVGYLRKRIDTPFGKRSIETVRGAGYRL 220


>gi|293375352|ref|ZP_06621634.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292646108|gb|EFF64136.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 224

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59
            +++DD   + +    +   +G S   F++    E L    +   D+  ++  L      
Sbjct: 6   ILIVDDEIEIIELLETVLKHEGFS-HIFHATTGTEALSLLKALNPDLVLLDVMLPD--LS 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             +L + I  H Q+P++ IS        L  F  G DD + KP   +E+  RV A   RL
Sbjct: 63  GHQLIKEIHQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFSAKEVAFRVKA---RL 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K +    + G I +           E   L  +E ++L YL+ +  K V+K QI   ++G
Sbjct: 120 KTTTKTIQFGNITITDG--IVSKNNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWG 177

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             D    +N +  HI +LRKK+  +      + +   LGY  
Sbjct: 178 E-DYFEFDNTISVHIRRLRKKIEVDPSKPKHITTIIGLGYKF 218


>gi|268610638|ref|ZP_06144365.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 224

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 3/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          +G + +  N       L      D   ++  L        
Sbjct: 4   ILLVEDDEQLAKILTRFLNSEGYATDYANGQRDALRLFEENAYDCILLDISLKD--GNGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   ++ +S  P+I I+       T+  F+ G DD + KP   RE+LAR+  + RR + 
Sbjct: 62  SVCAAVKKNSDTPVIFITASADEACTVAGFEIGADDYIGKPFGTRELLARMKNVMRRAQK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++     G + +          G    +   E R+L    +N+ + +++ ++   ++ L 
Sbjct: 122 TSPLINCGNVTIDPIKGIIYKNGHELSMSALEYRMLLVFFSNKNQLLSRDRLAEELWSLT 181

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
            E V +N +  +I +LR+K+ +       + + R LGY 
Sbjct: 182 KEFVSDNTLSVYIRRLREKIEDDPQDPKIIITVRGLGYK 220


>gi|258624938|ref|ZP_05719865.1| DNA-binding response regulator [Vibrio mimicus VM603]
 gi|258582794|gb|EEW07616.1| DNA-binding response regulator [Vibrio mimicus VM603]
          Length = 219

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  ++     G   E         +  ++   DV  ++  L       L
Sbjct: 3   ILVVEDDVQLGNQILSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       +G+   L   E +++ Y M N  K +++T++   IY 
Sbjct: 121 GNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I ++RKK+      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKI----APDVIKTVRGLGYQL 216


>gi|229824657|ref|ZP_04450726.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271]
 gi|229786028|gb|EEP22142.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271]
          Length = 232

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 99/230 (43%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +       ++G  + + +N  +   ++++    ++  I   ++      
Sbjct: 3   ILVADDDREIVELLNIYLHNEGYDVIKAYNGHQALSYIKNDVDHEIGLIILDIMMPKVDG 62

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++   +RA + + P++ +S   S Q  +    SG DD V KP +  EI+ARV +I RR 
Sbjct: 63  MQVLDKLRAANYETPVLMLSAKSSDQDKIQGLTSGADDYVTKPFNPLEIIARVKSILRRQ 122

Query: 120 K------VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +  E GP+ +     +   +  +   L   E  IL  L ++  +  +  +
Sbjct: 123 STYQKEVAEPDVIEIGPLIIRRASHEVKTLTDKDIQLTALEFGILYLLASHPNQVFSAEE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           IF A++   +  V    V  H+S LR K+     G   + +   +GY I+
Sbjct: 183 IFEAVWNQ-ESIVSAKTVMVHVSHLRDKIEAATEGERVIQTVWGVGYKIE 231


>gi|167751410|ref|ZP_02423537.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702]
 gi|167655656|gb|EDR99785.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702]
          Length = 222

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +  ++    +   E+ L    +     I   ++  G    
Sbjct: 4   ILIVEDNEELADILCDFLRAENYTVSVAKT--GEKALSLYEKYGARLIVLDIMLPGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S  P++ +S     +  L+    G DD + KP     +LA++A I++R   
Sbjct: 62  AVCRKIREESDTPILIVSAKVDKEDKLNGLILGADDYIEKPYDIDIMLAKIAGIFKRRYA 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   + G IRV    R          +  +E  +L  L+ N+G+ + K  +F+ I+G  
Sbjct: 122 VDELID-GDIRVNKVSRTVCRNDIPIEMTVKEFELLVLLIENKGRILTKEYLFNQIWG-S 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           D   E+  +  HI +LR+K+ +       + +   +GY  +
Sbjct: 180 DSFSEQQTLTVHIKRLRQKIEDDPKNPKHIQTVWGVGYKYE 220


>gi|162451560|ref|YP_001613927.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161162142|emb|CAN93447.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 256

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++G  +     L       +    D+  ++  L       L
Sbjct: 36  ILVIEDERKIAGFLRRGLAEEGHQVHVEEDLAGARRALAQGDYDLLLVDRALPD--GDGL 93

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R      P I ++    +   ++    G DD + KP    E+LAR+AA+ RR  
Sbjct: 94  DLIRELRRGGAATPAICLTARDRVGERVEGLHGGADDYLPKPFSFEELLARIAAVSRRAG 153

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S  R E   + +       E  G    L  +E  +L  L  + G+ +++T++   ++ +
Sbjct: 154 RS-ERVEVADLLIDLAAHRVERAGREIHLTAKEFALLRALAESAGRVLSRTRLLERVWDV 212

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +    NVV+  IS LR K+        + + R +GY ++
Sbjct: 213 GHDPG-TNVVDVAISALRAKVDRGFARPLIHTVRGVGYVLE 252


>gi|126700980|ref|YP_001089877.1| two-component system response regulator [Clostridium difficile 630]
 gi|115252417|emb|CAJ70259.1| Two-component response regulator [Clostridium difficile]
          Length = 237

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
            +L+DD   + D    +  +DG    ++ +N L+    L   A  DV  ++  L     +
Sbjct: 9   ILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAIS-LCKIACPDVVILDIMLPD--IE 65

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+ + IR  S   ++ +S        +    SG DD + KP   REI  RV A  RR 
Sbjct: 66  GIEVCKKIREFSYCSILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIAFRVKAQLRRQ 125

Query: 120 KVS------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +        +   + G I +  +G           L  RE  +L Y+  N  K + K ++
Sbjct: 126 QYQSIVPSDSEVIKIGDITIDIEGNRVYKDINEIELTGREYHLLSYMAQNVNKIIGKERL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220
           +  ++G++  ++ +N +  HI  +R+K+ +      +  + + LGY +
Sbjct: 186 YEQVWGVY-SSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKL 232


>gi|326201364|ref|ZP_08191236.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988932|gb|EGD49756.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   ++      F      +    + E           DV  ++  L   G    +
Sbjct: 6   LIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLP--GISGFQ 63

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +   +R     V +I ++        +   + G DD V KP +  E++ R  ++ RRL  
Sbjct: 64  VCETLRKELPGVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRRLVG 123

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +  ++G  ++    +    + +   L  +E  +L+  + N+ K   + ++  
Sbjct: 124 KGTSDSKEDTLKSGVFKLELYSQRVFKEDKEILLTPKEFFLLKIFLENKNKAFTRDELLD 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYS 219
            I+G +D   +  +V+ +I +LR K+ +K      +++   +GY 
Sbjct: 184 KIWG-YDYMGDTKIVDVNIRRLRSKIEDKDSHGMFIETVWGIGYR 227


>gi|168182546|ref|ZP_02617210.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182674404|gb|EDT86365.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 230

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       ++G+++  F + +  + L     +D+  I   ++      ++
Sbjct: 7   LIVDDEDEIREAIEIYLRNEGITV--FKAKDGIDALMLLEEKDIHLIIMDIMMPRMDGIK 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR +  +P+I +S        +   + G DD + KP +  E++AR+ +  RR    
Sbjct: 65  ATFKIRENKNIPIIMLSAKSEDTDKILGLNIGADDYITKPFNMLELVARIKSQLRRYVNL 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              K + ++   G + +    +   V  +   L   E RILE L+ N+G+  +  +I+  
Sbjct: 125 GNYKETEDKVVAGTLVLDKKRKIVTVDEKEIRLTPIEYRILELLIENKGRVFSIEEIYEK 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +       E N V  HI ++R+K+  N      +     +GY I
Sbjct: 185 AWKEPYYNGE-NTVAVHIRRIREKIEINPREPRYLKVVWGIGYKI 228


>gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++        +G ++E          L          ++  L   G    
Sbjct: 3   ILVVEDDARLRELLKEGLEQEGFTVETAGDGRDGLALARGTEYAAIVLDVMLP--GLSGY 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R A    P++ ++         D  D G DD + KP  +  ++ARV A+ RR  
Sbjct: 61  QVCSRLREAGVWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSYVVLIARVRALVRRGG 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G +R+           E   L  +E  +LE L    G+ V+KT+I   ++ 
Sbjct: 121 LDRPEVLELGDLRLEPTALACSRGNEGITLTAKEFAVLECLARRAGQVVSKTEIVHTVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   N+VE +I  LR+K+    G   + + R  GY +
Sbjct: 181 TA-YEGGANLVEVYIRTLRRKIDVPYGRQAIRTIRGAGYLL 220


>gi|120598570|ref|YP_963144.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146293351|ref|YP_001183775.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120558663|gb|ABM24590.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145565041|gb|ABP75976.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319426651|gb|ADV54725.1| two component transcriptional regulator, PhoP [Shewanella
           putrefaciens 200]
          Length = 224

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 106/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++         D G  ++   + +   +  ++   DV+ ++  L  +    +
Sbjct: 3   ILVVEDDVILSHHLKVQLSDLGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQ--DGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLIQQLRDAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +G +++    +   +  EV  +   E  ILEYLM +  + VAK ++   IYG
Sbjct: 121 GFVKPVITSGELKLDLAAKQVTLANEVMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 181 --DKEGDPNTIEVMVSRLRKKLTRDGIDNPIVTIRGQGYKFN 220


>gi|254788255|ref|YP_003075684.1| transcriptional regulator [Teredinibacter turnerae T7901]
 gi|237687195|gb|ACR14459.1| two component transcriptional regulator, winged helix family
           [Teredinibacter turnerae T7901]
          Length = 231

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 6/224 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L+DD   + D        +G +++  +S +      +S   +   I   ++  G   
Sbjct: 6   LILLVDDDQELCDLIGEYLTAEGFAVDKAHSGQSALTRLAS-PPECQLIVLDIMMPGLSG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ + +R  +  P+I ++        +   + G DD + KP + RE++ARV AI RR +
Sbjct: 65  LDVLQRLRPSNSTPVIMLTGRGDDIDRILGLEMGADDYLAKPCNPRELVARVRAILRRTQ 124

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  +   I++       +  G    L   E   L+ LM + G+   K  +   
Sbjct: 125 NPTSGDQHLLDVAGIQLSPADMQAKALGTPLQLTGAEFNTLKVLMQHPGQTQTKAFLTEQ 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +      A +   ++ H+S++R+KL N    D + S R +GY +
Sbjct: 185 VLHRPLTAYD-RSIDVHVSRIRQKLANAGIHDIIRSVRGVGYQL 227


>gi|254490732|ref|ZP_05103915.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463904|gb|EEF80170.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 219

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 10/220 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D  ++     +     G + +        E +      D+  ++  L   G+  LE+
Sbjct: 2   LVEDDPVLGPNLQSALNKSGFATDLSEDGIDGEAMGDIEPYDLIVLDLGLP--GQSGLEV 59

Query: 64  PRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
            +  R      P+I ++   + +  +  F +G DD + KP    E+L R+ A+ RR   +
Sbjct: 60  LKNWRQRENATPVIILTARDAWEDKVLGFKAGADDYLAKPFQTEELLVRINAVLRRSSGL 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S     +  + +    +   ++ GE   L   E ++L Y M +RGK ++KT +   +Y L
Sbjct: 120 SPGTLNSDGLILDESKQSVTLKSGENLALTGTEFKLLRYFMLHRGKLLSKTTLTEHVYQL 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D   + NV+E ++++LR+KL    G D + ++R  GY  
Sbjct: 180 -DSDKDSNVMEVYVNRLRQKL----GPDLIHTRRGQGYVF 214


>gi|187779471|ref|ZP_02995944.1| hypothetical protein CLOSPO_03067 [Clostridium sporogenes ATCC
           15579]
 gi|187773096|gb|EDU36898.1| hypothetical protein CLOSPO_03067 [Clostridium sporogenes ATCC
           15579]
          Length = 225

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 87/228 (38%), Gaps = 17/228 (7%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEKVLE 62
           DD   ++D           S+E  N ++  + L +       ++  I   ++      + 
Sbjct: 2   DDEKEIRDAIEIYLR----SIENINIIKAADGLDALDVLENNEIHVIILDIMMPKLDGIR 57

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR    
Sbjct: 58  TCMKIREKNNIPIIMLSAKNEDTDKILGLNIGADDYVAKPFNPLELVARVNSQLRRYTNL 117

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  S++      + +        V G+   L   E  IL  L  N G+    +QI+
Sbjct: 118 GNFPQTASDDEICLDQLVINKTSHVVTVDGKKIKLTPIEYDILLLLANNPGRVFPSSQIY 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++        EN V  HI +LRKK+  N      +     +GY ID
Sbjct: 178 EYVWNEP-SFKTENTVAVHIRRLRKKIEINPKEPRYIKVIWGVGYKID 224


>gi|163741296|ref|ZP_02148688.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161385649|gb|EDQ10026.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 225

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +    +      G  ++   +        ++   DV   +          L
Sbjct: 3   ILLLEDDPEIGTWTVKGLTAAGHVVDWIENGREALLAATTRDYDVLVFDRMTPD--LDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + +R A    PLI ++   +++  ++  ++G DD ++KP    E+LAR+ A+ RR +
Sbjct: 61  SALKTLRSARITTPLILLTALGAVEDRVEGLEAGADDYLSKPFAMTELLARITALGRRGR 120

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +  R     + +    +     G    L  +E R+LE LM ++G+   +  +   
Sbjct: 121 AEAAETATRLSHRGLDLDLLSQTCACNGTTVLLNPKEFRLLEVLMRSKGRIQTRAMLLER 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ + +     +VVE+H+S+LR K+    G + + + R  GY  
Sbjct: 181 VWDI-NFDPSTSVVETHMSRLRNKIEKPFGLEFIKTVRGSGYMF 223


>gi|91223635|ref|ZP_01258900.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
 gi|91191721|gb|EAS77985.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
          Length = 218

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+    +      G +++             +       ++  L       L
Sbjct: 3   LLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGSGVTSALKTEAFTAVILDLTLPD--IDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R IR    ++P++ ++    ++  +   D G DD + KP    E+LAR+  + RR  
Sbjct: 61  EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    + G + +    +          L R E +IL  LM N G+  +K Q+  +++G
Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNVGRVQSKEQLQQSLHG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +DE   +N +E HI  LRKK         + + R +GY ++
Sbjct: 181 -WDEGSSDNAIEVHIHNLRKK----APKVVIKNIRGVGYILE 217


>gi|83814704|ref|YP_445301.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Salinibacter ruber DSM 13855]
 gi|83756098|gb|ABC44211.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Salinibacter ruber DSM 13855]
          Length = 253

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ---SSAREDVSAIEAFLIGKGE 58
            ++ +D   +     + F   G  +   ++ E E+ LQ   +    D+  ++  L  K  
Sbjct: 15  LLIAEDDPDLGSSLESFFAQHGYEVH--HATEGEDALQEMTTLPPYDLVLLDVRLPQK-- 70

Query: 59  KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              E+ R  R      P+I ++     +  L  FD G DD V KP   +E+ ARV A+  
Sbjct: 71  DGFEVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKELAARVEAVLS 130

Query: 118 RLKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R + +     +    G + V           E   L   E  IL Y + +RG+ V++ Q+
Sbjct: 131 RSQSALPDTGDVFAFGNVSVHFPDETVTRDSEPVGLTDLEFDILTYFIEHRGRTVSREQL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              ++G+  + +    ++ H++ LRKK+         + +   +GY  
Sbjct: 191 LRDVWGISGD-ITTRTIDRHVASLRKKIEPTPDEPAYLQTVYGIGYKF 237


>gi|21233316|ref|NP_639233.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770278|ref|YP_245040.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115147|gb|AAM43115.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575610|gb|AAY51020.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 221

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ D           +++   +                 ++  L   G+  L
Sbjct: 3   LLLVEDDTMLADAIYDGVRQQSWTIDHVGTAAAARTALVEHHYTAVLLDIGLP--GDSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R H    P+I ++    L   +   D+G DD + KP    E++ARV AI RR +
Sbjct: 61  TVIRYMRGHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARVRAIARRSQ 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + V    R     G+   L   E R+L  LM   G+ V K Q+   +YG
Sbjct: 121 GRVVPLLTQGEVSVDPSSRKVTRNGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E    N++  ++ +LR+KL    G + + +    GY I
Sbjct: 181 GPSEGG-SNMIAVYVHQLRRKL----GDEVISTIYGQGYMI 216


>gi|260596416|ref|YP_003208987.1| DNA-binding response regulator CreB [Cronobacter turicensis z3032]
 gi|260215593|emb|CBA27829.1| Transcriptional regulatory protein creB [Cronobacter turicensis
           z3032]
          Length = 230

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 9/226 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + +    +   +G ++  F            A  D+  ++  L        EL
Sbjct: 8   LVEDETSISEALAYVMQLEGFTVRTFERGLPALDAARQALPDLVVLDVGLPD--ISGFEL 65

Query: 64  PRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            R +  A+  +P++ ++        L   + G DD V KP   RE+ ARV  I RRL+  
Sbjct: 66  CRQLLAAYPALPVLFLTARSEEVDKLIGLEIGADDYVAKPFSPREVCARVRTILRRLQKQ 125

Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + A+T    G   +  D        +  PL R E  +L+ L+   G+  ++ Q+   ++
Sbjct: 126 QSGAQTVVRAGRFELNDDAAQIAFCDQPLPLTRYEYLLLKTLLLAPGRVYSRQQLMDRVW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223
           G  +++ +   V++HI  LR KLR       P+++ R LGYS+  N
Sbjct: 186 GDANDSFD-RTVDTHIKTLRAKLRAVNPEASPINTHRGLGYSLAVN 230


>gi|300853883|ref|YP_003778867.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433998|gb|ADK13765.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 228

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A ++      F  +   +   ++ E            V+ ++  L   G    +
Sbjct: 5   LIVEDEASIRGFLKINFKRNKFIVIEASTGERALEKARVENPIVTILDVMLP--GMDGFK 62

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              I+R    ++ +I ++        +  F  G DD V KP + +E++ARV A+ RR+ +
Sbjct: 63  TCEILRREFPKMGIIMLTARSQDTDKIMGFGFGADDYVIKPFNPQELIARVNALLRRIGL 122

Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                N    +G  ++           +   L  +E  +++  + N+GK + + ++ + +
Sbjct: 123 QSDSKNEVLVSGEFKIDEGAMKVYRSEQELELTPKEYMLMKIFIENQGKALNRNELLNLV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           +G +    +  +V+ +I +LR+K+         +++   +GY 
Sbjct: 183 WG-YSYPGDAKIVDVNIRRLREKIEENSSKPKYIETVWGVGYR 224


>gi|299769361|ref|YP_003731387.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
 gi|298699449|gb|ADI90014.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
          Length = 220

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D     +   +    DG  ++     ++          D   ++  L    GEKV
Sbjct: 3   ILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGEKV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  R+  
Sbjct: 63  LTTIRY--KQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  A+Y 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E  I +LRKK+    G   + + R LGY +
Sbjct: 180 AWGEEIESNAIEVFIYQLRKKI----GSSCIKTIRGLGYRM 216


>gi|239502903|ref|ZP_04662213.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB900]
          Length = 220

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D     +   +    DG  ++     ++          D   ++  L    GEKV
Sbjct: 3   ILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLTGEKV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  R+  
Sbjct: 63  LTTIRH--KQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  A+Y 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPDHIITRDQLEEALY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E  I +LRKK+    G   + + R LGY +
Sbjct: 180 AWGEEIESNAIEVFIYQLRKKI----GSSSIKTIRGLGYRM 216


>gi|325568393|ref|ZP_08144760.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325158162|gb|EGC70315.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 224

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +    +  + G   + ++  E   +   +   D+  ++  +        
Sbjct: 4   LLVIEDDKTLSENMKEIVSEIGEVTQAYDGSEG-LYEAETGIYDLIILDLMMPE--MNGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R    Q P++ ++    L+  +  F  G DD + KP +  E+L R+ A+ +R  
Sbjct: 61  EVLSALRKKGLQTPVLILTAKDGLEDKVTGFQKGADDYLTKPFYREELLMRIKALLKRSL 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N  E   +       +   QGE+ P+  +E  +L Y + NR   + K QIF  I+
Sbjct: 121 GLFNENTLEYNGLLCNLGTNEVSYQGELLPIQGKEFELLLYFLQNRNIILTKEQIFDRIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      VVE ++S LRK LR       + + R +GY +
Sbjct: 181 G-FDSETTLTVVEVYMSNLRKHLRQTGIDKEIRTLRNVGYIM 221


>gi|238921801|ref|YP_002935315.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
 gi|238873473|gb|ACR73181.1| two-component system, OmpR family, response regulator [Eubacterium
           eligens ATCC 27750]
          Length = 261

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 97/246 (39%), Gaps = 28/246 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +    G + E   S    + L     +  + +   L+  G    
Sbjct: 15  ILIVEDDININNLLCEVLRKAGYTCEQAFSGTEAKLLLDIKEKAYTLVLLDLMLPGASGE 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR   ++P+I ++   S+   +     G DD + KP   RE+LAR+    R ++ 
Sbjct: 75  EVLKEIRKQGRLPVIVLTAKDSIDDKIGVLTDGADDYITKPFEIREVLARIQVQLRHIEA 134

Query: 122 S--------------------------NNRAETGPIRVFSDGRDPEVQGEVFP-LPRRER 154
                                      + R E   + +     +  + G V P + ++E 
Sbjct: 135 ETKSEAEAETEAETEVITKAGIQEGQGSGRLEFRDMVLIRSTFEVSIGGRVLPKITKQEF 194

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
            ILE L+ N  +  +K  IF   +       E   ++ HIS +RKK++     + +++  
Sbjct: 195 AILELLLKNPKQVFSKEDIFEYAWDEP-YMGETKTLDVHISNIRKKIKTVTPDEYIETIW 253

Query: 215 FLGYSI 220
            +GY +
Sbjct: 254 GIGYRL 259


>gi|226310855|ref|YP_002770749.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093803|dbj|BAH42245.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++     A     G  +   N       L    + D+  ++  L  +     
Sbjct: 4   ILLVEDELVIARVIKAYLQKAGYEVWSANDGLEAMELFDEKKPDLVLLDVMLPER--NGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S  P+I ++        L   + G DD + KP    E++ARV A+ RR  +
Sbjct: 62  EILQYIREKSSCPVIIMTALGQTDQKLKGLNQGADDYITKPFVADEVVARVNAVLRRSVI 121

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                ET   G +++        + G       R+  +L +L  N  +   + Q+   ++
Sbjct: 122 LVKDQETRLFGSLKINFQSHHVTLHGLELTFHPRDLSLLLFLAQNPNQTFTREQLIEQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G+ D    +  V+  I ++RK L N  +    + ++R +GY  
Sbjct: 182 GM-DYGGSDRAVDLAIKRVRKTLENWPVQEGEIKTQRGVGYQF 223


>gi|210622339|ref|ZP_03293108.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
 gi|210154327|gb|EEA85333.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
          Length = 232

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 103/231 (44%), Gaps = 19/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++IDD   + +         G     S +GF+            + D+  ++  L     
Sbjct: 9   LIIDDEMHIVELLRFNLETSGYKTIYSYDGFDGFIKA----KEEKPDLILLDWMLPN--I 62

Query: 59  KVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
             +E+ + IR  +    +P+I ++        ++  + G DD + KP   +E+LAR+ ++
Sbjct: 63  SGIEVLKKIRQDADLKKIPVIMLTAKNMEDDKVEGLEVGADDYITKPFSIKELLARITSV 122

Query: 116 YRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            RR  +     +     G +++     + ++  +   L  +E  +L+ L+ NRGK +++ 
Sbjct: 123 MRRYGMNTGKESEELTAGNLKLNLTKHEVKINDKKVDLTLKEFELLKLLLKNRGKVLSRN 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
            +   I+G ++   E   V+ HI  LRKKL      +  +++ R +GY ID
Sbjct: 183 FLLDEIWG-YEYYGETRTVDVHIRYLRKKLEEAGADEKYIETIRGVGYKID 232


>gi|90407312|ref|ZP_01215498.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
           CNPT3]
 gi|90311595|gb|EAS39694.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
           CNPT3]
          Length = 242

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +    + +  +    +A+ D+  ++  L   GE  L
Sbjct: 6   LLIVDDHQEIRELLQRFLKQHQYRVSVAINGQEMKKKLKTAQIDLIILDLMLP--GEDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P+I +S        +   + G DD ++KP +  E+LAR+ A+ RR   
Sbjct: 64  TLCRNLRAQSNIPVIMLSAMGEEMDKIIGLEMGADDYISKPFNPHELLARIKAVLRRSTQ 123

Query: 122 ------SNNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +         +  + R     QG    L   E  +L+  + +  + +++ Q+ 
Sbjct: 124 ITKQVTDSQILHFERWTLDINRRQLLNHQGINIILSSAEFSLLKVFLEHPQQVLSRDQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
               G  +  V +  +++ +S+LRKKL         + +    GY +
Sbjct: 184 DLAKGR-EGDVYDRAIDTQVSRLRKKLEKDPKQPCLIKTIWGGGYQL 229


>gi|319936869|ref|ZP_08011281.1| two-component system response regulator [Coprobacillus sp. 29_1]
 gi|319808137|gb|EFW04709.1| two-component system response regulator [Coprobacillus sp. 29_1]
          Length = 231

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   + D        +G  +E  +N+L     L+      +  +   ++      
Sbjct: 6   ILVIDDEKEITDLIEIYLSQEGYHVEKRYNALTL---LEDIRTYQIDLVILDVMMPEING 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++  ++IR    +P+I +S   +    ++   +G DD V+KP +  E++ARV +  RR +
Sbjct: 63  IQALKMIREKYNIPVIIVSAKTADNDKIEGLLTGADDYVSKPFNAMELVARVKSQLRRFQ 122

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           V       S++  E   + + +  +   +  +   L R E  IL  L +  G   +   I
Sbjct: 123 VFNKPINDSSHIIEASDLIIDTQKKSVTLDNQSLALTRIEYEILVLLASQPGTVFSIEDI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           F  I+         N +  HI KLR+K+ R       + +   +GY  D
Sbjct: 183 FEKIWHEK-STNSNNTIMVHIRKLREKIERQPRNPRHIKTVWGIGYKFD 230


>gi|306831853|ref|ZP_07465009.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304426051|gb|EFM29167.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 230

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 10/222 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   +++   +   + G+ +E F + +           DV  ++  +   G   +E+  
Sbjct: 8   DDEKNIRELIASFLREQGLDVEIFETGDQLLLRFMEEEADVVILDVMMP--GTNGVEIAT 65

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------- 118
           ++R  S VP+I ++   S    +  F +G DD   KP    ++  RV AI  R       
Sbjct: 66  MLRKRSDVPIILLTARDSDADFVKGFSAGADDYFTKPFSPLKLSLRVKAILARQPQSQEV 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +++      + +    R      +V  L   E  +L+ LM +  + V++ ++   I+
Sbjct: 126 AKGTSDVVTYEALTLSEKERTVTYDNQVLKLTNTEFELLKMLMNHAEEAVSRDELLHHIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++ ++E  V +  I +LRKKLR       +++    G+ +
Sbjct: 186 G-YESSIETRVTDDTIKRLRKKLRGVDSHVLIETVWGYGFKL 226


>gi|293602289|ref|ZP_06684736.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292819318|gb|EFF78352.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 230

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 95/227 (41%), Gaps = 9/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       D+   ++          L    + D+  ++  L   G    
Sbjct: 3   ILVIEDEQKLAELLRRSLTDNSYIVDIAMDGVSGLQLAYETQYDLIILDIGLP--GLDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR +  VP++ ++   SL+  +   + G DD + KP    E+ ARV A+ RR   
Sbjct: 61  EVLQRIRKNDNVPVMMLTSRSSLEDRVRGLEQGADDYLIKPFALSELQARVLALRRRAAG 120

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S       N      + +    R          L  +E  +L ++M   G+ +++  +  
Sbjct: 121 SGDTMSGGNILRVADLELDLLRRRVARGNSRIDLTAKEFGLLTFMMRREGEVLSRLVLAE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++ + +     NVVE  + +LR K+ +      + + R +GY+I++
Sbjct: 181 QVWDM-NFNSNTNVVEVAVRRLRAKVDDPFDIKLLHTVRGMGYTIEY 226


>gi|291520902|emb|CBK79195.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 220

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++  +   G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSN-PLKINMEELHRYDLILLDIMMP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IRA    P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   +  +  P  + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    ++ + +HI  +R K  +   + P+ +   +GY  +
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYMPIKTVWGIGYKWE 219


>gi|227500147|ref|ZP_03930217.1| response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227217764|gb|EEI83066.1| response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 219

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + + +DD   + +    +   +   ++ + N LE +      ++ D+  ++  +   G  
Sbjct: 3   LILAVDDELDMLELIKNILKKNNHEVDVYQNPLEIDN--SKLSKYDLILLDIMMP--GIN 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +   + IR     P++ ++     +  ++    G DD + KP    E+LARV A  RR 
Sbjct: 59  GINFCKEIRNKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGAAELLARVEAHLRRE 118

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K   +     G IR      +  V  +   L + E +I E L   +G+  ++ QI+  I+
Sbjct: 119 KRERHTSLNLGEIRFDLSSNEVFVGDKKVHLTKSEYQISELLAKRKGQVFSREQIYELIF 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G FD   + + +  HI  +R K   K G +P+++   +GY   WN
Sbjct: 179 G-FDGIGDASAISEHIKNIRAKF-QKYGKNPIETVWGIGYK--WN 219


>gi|188532256|ref|YP_001906053.1| DNA-binding transcriptional regulator CpxR [Erwinia tasmaniensis
           Et1/99]
 gi|188027298|emb|CAO95141.1| Two-component response regulator [Erwinia tasmaniensis Et1/99]
          Length = 233

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 95/230 (41%), Gaps = 19/230 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED--VSAIEAFLIGKGEK 59
            +L+DD   +      L       +EGFN L   +  Q+ A  D  V  +   ++   + 
Sbjct: 4   ILLVDDDRELTSLLKELLE-----MEGFNVLVAGDGEQALALLDNTVDLLLLDVMMPKKN 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            ++  + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR 
Sbjct: 59  GIDTLKELRQQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118

Query: 120 KVSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             S  +           E   +R+    ++    GE   L   E  +L  L  + G+ V+
Sbjct: 119 NWSEQQQHQHDNSSPTLEVDLLRLNPGRQEASFDGETLDLTGTEFTLLYLLAQHLGQVVS 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +  +   + G      +   ++ HIS LR+KL   +       + R  GY
Sbjct: 179 REHLSQEVLGKRLTPFD-RAIDMHISNLRRKLPERQDAHPWFKTLRGRGY 227


>gi|126732451|ref|ZP_01748250.1| two-component system regulatory protein [Sagittula stellata E-37]
 gi|126707090|gb|EBA06157.1| two-component system regulatory protein [Sagittula stellata E-37]
          Length = 233

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 109/221 (49%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D A V D  +A FG  G +++  NS+E      +    DV  ++  L  G G  +
Sbjct: 13  LLLVEDTADVADAIVASFGHRGDAVDHVNSVEDALGALAVQDYDVIILDIGLPDGLGTDI 72

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R     +  P++ ++   +++  +   D G DD + KP   RE+ ARV A+ RR  
Sbjct: 73  LSSLRSR--GTPTPVMMLTARSNIEDRVAALDKGADDYLIKPFDLRELHARVRAMLRRQD 130

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V  +   E G I     G   EV+G    L RRE  +LE L+ANR + V K ++   +Y 
Sbjct: 131 VDRSGVIEFGDITFDPAGLTVEVKGRPVALVRREFNVLEILLANRERVVPKDKLLERMYA 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE V  N VE ++ +LRKKL N      + + R LGY +
Sbjct: 191 FNDEDVSPNAVELYVGRLRKKLCNSQIT--IKTLRGLGYQL 229


>gi|126665458|ref|ZP_01736440.1| probable two-component response regulator [Marinobacter sp. ELB17]
 gi|126630086|gb|EBA00702.1| probable two-component response regulator [Marinobacter sp. ELB17]
          Length = 228

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+    + +   D  +++  N  +           D++ ++  L       L
Sbjct: 3   ILLVEDDHLLGSTLLGMLRADQHTVDWLNDGQQALNALVDEHFDLAILDLTLPRV--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  R     +P+I ++    L+  L   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DIVRHTRQQGNQLPIIILTARAELEEKLQGLDAGADDYLTKPFAMAELKARIRAVTRRRS 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +N ++   G + +               LPR E +IL+Y+M +  +   + ++   +YG
Sbjct: 121 STNGDQLIVGQLTLDPASAQLTCGTGTATLPRSEFQILQYMMRHPDQVATRRRLEEQLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   E N +E HI  LR++    +G   + + R +GY +D
Sbjct: 181 -WEPGAESNALEVHIHHLRRR----VGKATIRTIRGVGYFLD 217


>gi|83644677|ref|YP_433112.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632720|gb|ABC28687.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 223

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  +++   +   GD G  ++     E   WL S    D+  ++  L        
Sbjct: 3   LLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPH--MNGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119
           EL   +R   +   ++ ++    ++  +    SG DD + KP    E+LAR+ A+  RR 
Sbjct: 61  ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N  E G + +    +   V G    LP RE  +LE L  NR + V++ +I   IY 
Sbjct: 121 GCASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E +  NVV+S IS LRK + +K     + ++R  GY I
Sbjct: 181 DKIEPM-SNVVDSAISSLRKMIDHKDRPSFILTRRGHGYQI 220


>gi|328476337|gb|EGF46980.1| two-component response regulator [Lactobacillus rhamnosus MTCC
           5462]
          Length = 226

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 13/224 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS----SAREDVSAIEAFLIGKGE 58
           + +DD A +       F      L  F  L  +    +    + + D+  ++  L     
Sbjct: 6   LAVDDDAAILAMLKRYFA---WRLPEFRLLTADAGQAALSQLAQQPDLILLDVNLPD--I 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               L   IRA + VP+I ++   + Q  +    +G DD V KP    E+ AR+ A  RR
Sbjct: 61  DGFTLTNRIRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRR 120

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +A+    G I +        V      L  ++ +++E+L  N G+  ++ Q++ 
Sbjct: 121 AHQPDKQAQIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+G +D   +E V+  HI ++RK         P+ +   +GY 
Sbjct: 181 KIWG-YDAQGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGYK 223


>gi|312883408|ref|ZP_07743134.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369024|gb|EFP96550.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 219

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 105/222 (47%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E F+S    +  Q   + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECFHSETIADVAQYWEKADLVILDRQLPD-GDSV- 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E     +    +P+I ++   +++  +   DSG +D + KP    E+ AR+ A  R  + 
Sbjct: 61  EHLVDWKKLKDIPVILLTALVTVKDKVMGLDSGANDYLTKPFAEAELFARIRAQLRAPED 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++R +T  +++    R+   + +   L R E  +L +L +N G+   + ++   ++
Sbjct: 121 ELQDDSRVQTEHLKIDKSTREVIYKDDFITLTRTEFDLLLFLASNLGRVFTRDELLDHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 G-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 217


>gi|295093355|emb|CBK82446.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   +      +   +  S++  +N  +  +++ +   + V  ++  +       
Sbjct: 3   LLLAEDEKALSSALQVILKHNNYSVDAVYNGQDAYDYIMAGVYDGV-ILDVMMP--KMDG 59

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
             +   IRA    VP+I ++        ++  D G DD + KP   +E+LAR+ AI RR 
Sbjct: 60  FTVLSKIRAEGCDVPVIMLTAKAETDDKINGLDLGADDYLAKPFETKELLARIRAITRRK 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +   + G   + S   +    G    L  +E +I+E LMAN+   ++   +   I+
Sbjct: 120 SEAVSTEMKYGDCTLNSLNYELSSSGGSVKLQNKEYQIMELLMANQNAIISAELMMEKIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G +D   E +VV  +IS LRKKL        + + R  GY +++
Sbjct: 180 G-YDTDTEISVVWVNISYLRKKLSQIGSGVSIKAVRNQGYILEY 222


>gi|241889810|ref|ZP_04777108.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC
           10379]
 gi|241863432|gb|EER67816.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC
           10379]
          Length = 238

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 93/231 (40%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++   I     +G  ++   +    + L+     D S +   +        
Sbjct: 5   ILIIDDEERIRKLLIMYLEKEGYIVD--EASNGHDGLERLKYMDYSCVLLDVQLPMLNGK 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S     Q+ ++ F+ G DD V KP   RE++ R+ AI +R K 
Sbjct: 63  SILSELRKTKATPVIIMSAQADEQSRVEGFELGADDYVVKPFSPRELMLRINAILQRTKR 122

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S          +      + +  +     V      L  +E  +L +L  +  K   + +
Sbjct: 123 SVFYTPELYAKDVLVFPGLIIDVNSHKVIVDDTEVLLTPKEFDLLLFLAKSPDKAFKRNE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221
           I  A++  +D   +   V++HI ++RKK    + +    + +   +GY  D
Sbjct: 183 ILRAVWD-YDFYSDLRTVDTHIKRVRKKFDKISPIVAQMIVTVWGIGYKFD 232


>gi|168183441|ref|ZP_02618105.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182673489|gb|EDT85450.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 230

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLP--GMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  KLLSNIRKSKPMPVIIISAKEEKDIKIEALRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N  +   I +  D R+  +  +   L  RE  IL+ LM    K   K+ +F +
Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VW-SSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229


>gi|78049624|ref|YP_365799.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927313|ref|ZP_08188567.1| two component transcriptional regulator, winged helix family
           [Xanthomonas perforans 91-118]
 gi|78038054|emb|CAJ25799.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325542314|gb|EGD13802.1| two component transcriptional regulator, winged helix family
           [Xanthomonas perforans 91-118]
          Length = 221

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++             +++        + +    R     ++  L   GE  L
Sbjct: 3   LLLVEDDTMLASAICEGVRQQSWTIDHVGHANAAKTVLVDHRYSAVLLDIGLP--GESGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R+H    P+I ++    L   +   D+G DD + KP    E++AR+ A+ RR +
Sbjct: 61  SVIRFMRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAVTRRSQ 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R     G+   L   E R+L  LM   G+ V K Q+   +YG
Sbjct: 121 GRVVPLLSHGDVCMDPGSRKVTKDGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E    N++  ++ +LR+KL + L    + +    GY +
Sbjct: 181 GPSEGG-SNMIAVYVHQLRRKLGDAL----ISTVYGQGYMV 216


>gi|327395749|dbj|BAK13171.1| transcriptional regulatory protein CpxR [Pantoea ananatis AJ13355]
          Length = 249

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G  +   +  E    L  ++  D+  ++  +  K    +
Sbjct: 21  ILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLLDNS-IDLLLLDVMMPKK--NGI 77

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 78  DTLKELRQQYQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 137

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S  +          E   +R+    ++     E   L   E  +L  L  + G+ V++  
Sbjct: 138 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDSETLDLTGTEFTLLYLLAQHLGQVVSREH 197

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   + G     + R  GY
Sbjct: 198 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPDRRDGHPWFKTLRGRGY 243


>gi|302544863|ref|ZP_07297205.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462481|gb|EFL25574.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
           ATCC 53653]
          Length = 226

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  V  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGLQGGVDLLVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           + R +R      P++ ++       T+   D+G DD V KP    E+LARV A+ RR  +
Sbjct: 63  VCRRLRTEGHGFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAV 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +       T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++ 
Sbjct: 123 ETQAQAPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWD 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221
               +     ++ HIS LRKKL +  G    + + R +G+  +
Sbjct: 183 TTWWS-STKTLDMHISWLRKKLGDDAGNPRYIATVRGVGFRFE 224


>gi|255595850|ref|XP_002536403.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
 gi|223519809|gb|EEF25981.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
          Length = 233

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ D  +    +   +++ F + +       S   D+  ++  L        
Sbjct: 12  ILLVEDDVVLGDALVQSLVNATYAVDWFRNGKEGVLAVQSQSYDLVLLDLGLPF--LNGF 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  + +R   Q VP+I ++   + +  +  FD G DD + KP    E+ AR+ A  RR+ 
Sbjct: 70  EFIKRLRNGKQAVPVIVLTANDNSEDIVRAFDLGADDYLIKPFKLPELTARIRAQIRRVS 129

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +++   G + + +  R   V+GE   L  RE  +LE L    GK V K  +  ++  
Sbjct: 130 AHFSSKVSIGELELDTKERLAFVKGEKLSLSPREFSLLETLSNKFGKLVTKDALIESLCN 189

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D  +  N +E ++ +LRKKL +      + + R LGY ++
Sbjct: 190 -WDHDIGPNAIEVYVHRLRKKLGD--CDVTISNVRGLGYMME 228


>gi|78065828|ref|YP_368597.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77966573|gb|ABB07953.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 252

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 12/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++        D G++     +    E   +        +   L+   +  L
Sbjct: 23  ILVVDDDSQIRSLLCDCLADFGMT--TAQAGTGAEMHLALGEGGFDLVVLDLMLPDDDGL 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IRA S++PLI ++    +   +   + G DD + KP   RE++AR+  I RR++ 
Sbjct: 81  NLCREIRATSEIPLIILTARGEMTDRIVGLELGADDYIVKPFEPRELVARIQTILRRVRA 140

Query: 122 -------SNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  +   +     R+   GR        V PL   E R+L   +A  G+ +++  +
Sbjct: 141 QTQGRTRAQEESRFAGWRLHQIGRHLIAADNTVIPLSNAEFRLLNAFLAAPGRVLSREYL 200

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
                G   +  +   ++  IS+LR+KLR  +     + + R  GY +D 
Sbjct: 201 MDTARGKSIDTFD-RSIDVQISRLRQKLREDIKEPRLIRTIRGEGYMLDV 249


>gi|296330321|ref|ZP_06872802.1| two-component response regulator (YvcQ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676074|ref|YP_003867746.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152589|gb|EFG93457.1| two-component response regulator (YvcQ) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414318|gb|ADM39437.1| two-component response regulator (paired with YvcQ) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 237

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  ++    L   +   +  + D+  ++  L        
Sbjct: 4   ILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFTEMKPDLVLLDINLPFF--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
              R IR  S  P+I IS        +   ++G DD + KP H   ++A++ ++ RR   
Sbjct: 62  YWCRQIRTISNAPIIFISARTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYG 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L   +   E G + V+ D  + E         ++E ++L   +    K V++ ++
Sbjct: 122 EYSPSLSQESRIVELGGLTVYPDQNEAEWNSTRILFSQKEFQLLSIFVREHKKIVSRDEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             A++   D  V++N +  ++++LRKKL N    D + + R  GY    N
Sbjct: 182 LEALWDDVD-FVDDNTLTVNVNRLRKKLENAGLKDCISTIRGQGYQFQVN 230


>gi|121597839|ref|YP_990168.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|134284304|ref|ZP_01770993.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|237508768|ref|ZP_04521483.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242310946|ref|ZP_04809963.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|121225637|gb|ABM49168.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|134244344|gb|EBA44453.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|235000973|gb|EEP50397.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242134185|gb|EES20588.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
          Length = 232

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +   A    DG   +   SL       + A  D+      L+    + L+
Sbjct: 17  LLVEDDPWLGEAVRAQIEKDGHPTDCVASLAHARRHVAVAPYDLIL--LDLLLPDGRGLD 74

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +RA  S VP+I ++    +   +   ++G DD + KP    E+ ARV+A+ RR   
Sbjct: 75  FLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARRYSG 134

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N   + G + V    R     G    L   E  +LE L+ + G  ++K Q+   +Y  
Sbjct: 135 NPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERLYSF 194

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE V  N +E H+S+LRKKL    G + +++ R LGY +
Sbjct: 195 SDE-VGSNTIEVHVSRLRKKL----GAELIETVRGLGYRL 229


>gi|126699904|ref|YP_001088801.1| two-component system response regulator [Clostridium difficile 630]
 gi|254975883|ref|ZP_05272355.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255093270|ref|ZP_05322748.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255101433|ref|ZP_05330410.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
 gi|255307306|ref|ZP_05351477.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
 gi|255315012|ref|ZP_05356595.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255517687|ref|ZP_05385363.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255650797|ref|ZP_05397699.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|260683880|ref|YP_003215165.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260687540|ref|YP_003218674.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|306520698|ref|ZP_07407045.1| two-component system response regulator [Clostridium difficile
           QCD-32g58]
 gi|115251341|emb|CAJ69173.1| Two-component response regulator [Clostridium difficile]
 gi|260210043|emb|CBA64112.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260213557|emb|CBE05314.1| two-component system response regulator [Clostridium difficile
           R20291]
          Length = 230

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 99/228 (43%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D        +G  +  + + +  + L+     D+  I   ++      +
Sbjct: 4   ILVVDDDKEIVDSIEIYLKSEGFKI--YKAYDGMKALEIITENDIHLILMDIMMPKLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR    +P+I IS        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 62  KATVKIREERNIPIILISAKSEDTDKIIGLNIGADDYITKPFNLLELIARVKSNLRRYVT 121

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             N         ++G + + +  ++ ++ GE   +   E +I+E L+ N+G+  +  +I+
Sbjct: 122 LGNYEDTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             ++   +    EN V  HI ++R+K+  N      +     +GY I+
Sbjct: 182 EKVWNE-ESFNSENTVAVHIRRIREKIEINPKEPRFLKVVWGVGYKIE 228


>gi|12964068|emb|CAC29256.1| putative regulatory protein [Bartonella quintana]
          Length = 240

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +  +       +
Sbjct: 11  IVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHPPHLAIFDIKMPR--MDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 69  ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRAST 128

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N    T          G + +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLTTGASPTSSLKRGDLVMDQERHTCTWKDKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAAY-SDQVYVDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRF 237


>gi|68536723|ref|YP_251428.1| two-component system response regulator MtrA [Corynebacterium
           jeikeium K411]
 gi|68264322|emb|CAI37810.1| two-component system response regulator MtrA [Corynebacterium
           jeikeium K411]
          Length = 225

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                     D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVMLP--GMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           ++ + IR  S VP++ ++        +   +SG DD V+KP   +E++ARV A  RR   
Sbjct: 63  DVCKAIRETSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKELVARVRARLRRTPE 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E   +++   G      G+   L   E  +L  L +   +  ++ ++   ++G
Sbjct: 123 EAPAETIEVVDLKIDVPGHQVIRDGQEIALTPIEFDLLVTLASRPRQVFSREELLEQVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
            + ++ +  +V  HI +LR K+ R+      + + R +GY 
Sbjct: 183 -YRKSSDTRLVNVHIQRLRSKVERDPDDPKIIQTVRGIGYK 222


>gi|94309410|ref|YP_582620.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353262|gb|ABF07351.1| DNA-binding response regulator in two-component regulatory system
           with Rmet_0464 [Cupriavidus metallidurans CH34]
          Length = 229

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG        G +++   +    +   S+   D+  ++  L       L
Sbjct: 3   ILIAEDDDVLADGLTRSLRQSGYAVDHVANGVEADSALSTQSFDLLILDLGLPR--MSGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +RA S  VP++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLKRLRARSAMVPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    GP+     GR   +  ++  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGATLMRHGPLAFDQVGRIAYLNEQMLDLSAREVGLLEILLTRSGRLVSKEQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+   +G   + + R LGY ++
Sbjct: 180 EWGEEVSNNAIEVYVHRLRKKIE--VGGIRIATVRGLGYCLE 219


>gi|288905755|ref|YP_003430977.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|325978788|ref|YP_004288504.1| two-component system response regulator [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288732481|emb|CBI14053.1| Putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|325178716|emb|CBZ48760.1| two-component system response regulator [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 230

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 10/222 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   +++   +   + G+ +E F + +           DV  ++  +   G   +E+  
Sbjct: 8   DDEKNIRELIASFLREQGLDVEIFETGDQLLLRFMEEEADVVILDVMMP--GTNGVEVAT 65

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------- 118
           ++R  S VP+I ++   S    +  F +G DD   KP    ++  RV AI  R       
Sbjct: 66  MLRKRSDVPIILLTARDSDADFVKGFSAGADDYFTKPFSPLKLSLRVKAILARQPQLQEV 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K +++      + +    R      +V  L   E  +L+ LM +  + V++ ++   I+
Sbjct: 126 AKGTSDVVTYEALTLSEKERTVTYDNQVLKLTNTEFELLKMLMNHAEEAVSRDELLHHIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++ ++E  V +  I +LRKKLR       +++    G+ +
Sbjct: 186 G-YESSIETRVTDDTIKRLRKKLRGVDSHVLIETVWGYGFKL 226


>gi|182418651|ref|ZP_02949928.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237668000|ref|ZP_04527984.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377513|gb|EDT75067.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237656348|gb|EEP53904.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 229

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            ++ DD   +++    L   +G ++    ++  E+ +       D+  ++  +  K    
Sbjct: 4   ILIADDNDEIREIVRILLESEGFNVS--EAINGEDAVNKVNDNTDLIILDIMMPIK--SG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +    IR  +  P++ ++           F +G DD ++KP  + E+++RV A+ RR  
Sbjct: 60  FKACIEIREKTSAPILFLTAKSQDSDKCMAFSAGSDDFLSKPFSYTELISRVKALLRRYY 119

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +        S++  +   +++     +  +  E   L   E R+L  + +NR K  +   
Sbjct: 120 IYKGKEAPESSDSIDINGLKINKTSNEVSIDNEEIILTEIEYRLLLLMASNRSKIFSAQN 179

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++ +++         N V  HI  LR KL  +      + +    GY I+
Sbjct: 180 LYESVWNEPYFYTNNNTVMVHIRNLRSKLECDPQNPKYIKTVWGKGYRIE 229


>gi|150018187|ref|YP_001310441.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904652|gb|ABR35485.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 218

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +      G  G    + F+ +E    L      D+  ++  L   G   
Sbjct: 5   ILIVEDDEAISNLIRISLGMAGYQCKQTFDGMEAFN-LIKQESFDLILMDIMLP--GIDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + I++   VP+I ++    L   +    SG +D + KP    E+LAR+  + RR  
Sbjct: 62  FELMKRIKSL-NVPVIFLTAKNGLADKITGLKSGAEDYIVKPFETVELLARIEIVLRRYS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +NN  E   ++++ D R  +   E   L  +E  ++  L+ N+   +++  +   I+G 
Sbjct: 121 KNNNCIEFKRLKIYEDERIIKNGDETIDLTLKEFELILLLVKNKNMALSREYLLEKIWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   E   +++HI K+RKKL      + + +   +GY ++
Sbjct: 180 YEYMGETRTIDTHIQKIRKKLD---IAENIKTVYKIGYRLE 217


>gi|125974039|ref|YP_001037949.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|281418193|ref|ZP_06249213.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714264|gb|ABN52756.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|281409595|gb|EFB39853.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 224

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +           + EG     FE+ L+  A+ +   +   +        
Sbjct: 4   ILIVEDDKALCNNIKEGISK--WNFEGIAVQNFEDILKEFAKHNPHLVIMDINLPYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              + IR  S VP+I +S   S    +   + G DD V KP     +LA++ A+ RR   
Sbjct: 62  YWCKKIRDISNVPVIFLSSRDSNMDIVMAVNMGGDDYVTKPFSMDVLLAKMQALIRRAYS 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E     + ++       G+   L + E +IL+ LM N+GK V++ +I   +
Sbjct: 122 YGQFDGQIIECNGAILNTNDGTLTYNGKNIELTKNEFKILQLLMRNKGKIVSRDKIMRVL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +  + EN +  ++++LR KL +    D + +K+  GY I
Sbjct: 182 W-ESEYFISENTLTVNVNRLRSKLEDIGLKDLIVTKKSQGYMI 223


>gi|329929475|ref|ZP_08283209.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328936363|gb|EGG32810.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +         ++G  +   +  E      +S    V  ++  +   G   L 
Sbjct: 10  LLVDDEPHILQFLELGLHNEGFEVRTASDGECALREAASFEPHVIVLDVMMP--GMDGLA 67

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R ++     + +I ++    +   +    +G DD + KP    E+LAR+ A  R    
Sbjct: 68  VCRRLKEEGRDIAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQFP 127

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S       GP  +    ++    GE   L   E ++L+ L+   G  ++K+ I + ++  
Sbjct: 128 SLLGEIRLGPFTIDDRKKEISYLGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD- 186

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   E+N+VE +I  LR+KL +K     + + R  GY +D
Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGDK-EHRVIRTLRGAGYRVD 226


>gi|307944018|ref|ZP_07659360.1| sensory transduction protein regX3 [Roseibium sp. TrichSKD4]
 gi|307772859|gb|EFO32078.1| sensory transduction protein regX3 [Roseibium sp. TrichSKD4]
          Length = 256

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +   A     G  + E  + L   +   S    D+   +  L  +    
Sbjct: 26  ILVVEDDENILNLLSAYLESSGHEVVEHRDGLSGFQAALSDT-FDMCIFDVMLPHR--TG 82

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+   +R+     P++ ++   S    L  F +G DD V KP   RE++ R+ AI RR 
Sbjct: 83  TEIAEAMRSQGALTPILFLTALGSETNVLQGFAAGADDYVVKPFSPRELIVRIKAILRRS 142

Query: 120 KVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +++N       E GPI++  +     + G    L   E +IL  L+    + +++ Q+ S
Sbjct: 143 QMANEAEAQLLEVGPIQLDLEHPSCNLSGRTISLTPCEYKILRGLLERPRRVLSRGQLIS 202

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +YG  D AV    ++ H+  LR K+ +  G   +++ R  GY I
Sbjct: 203 LLYGN-DVAVGPKAIDVHVHNLRAKIGDDAGV-IIETVRGFGYRI 245


>gi|260770795|ref|ZP_05879724.1| two-component system response regulator OmpR [Vibrio furnissii CIP
           102972]
 gi|260614032|gb|EEX39222.1| two-component system response regulator OmpR [Vibrio furnissii CIP
           102972]
          Length = 240

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDPLLTRETFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQV 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSADDTVVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|228903532|ref|ZP_04067655.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228910870|ref|ZP_04074679.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228968144|ref|ZP_04129148.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791579|gb|EEM39177.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228848821|gb|EEM93666.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228856108|gb|EEN00645.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 216

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 100/221 (45%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPD--IDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LK 120
           +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR      
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++G 
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL    G   + + + +GY I+
Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GITYIKTVKGIGYKIE 215


>gi|37678420|ref|NP_933029.1| osmolarity response regulator [Vibrio vulnificus YJ016]
 gi|37197159|dbj|BAC93000.1| transcriptional regulator OmpR [Vibrio vulnificus YJ016]
          Length = 243

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 11  ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGL 68

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 69  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 128

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 129 IELPGAPSAEEKIVEFGEFRLNLGTREMFRGDEPMPLTSGEFAVLKSLVTNAREPMSRDK 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L         + +   LGY  
Sbjct: 189 LMNMARGR-EYSAMERSIDVQISRLRRMLEEDPSKPRYIQTVWGLGYVF 236


>gi|332139945|ref|YP_004425683.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549967|gb|AEA96685.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 247

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++IDD   + +         G  ++  N+ E       S R  D+  ++  +       
Sbjct: 20  ILVIDDDLELTEMLATYLSGMGYQVQVRNNGEEGLSEAVSGRHYDLILLDVMMP--KMDG 77

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ + +R+    P++ ++        +   + G DD + KP +HRE++AR+ AI RR  
Sbjct: 78  FDVLKKLRSSHSTPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRHN 137

Query: 121 VSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +S++            I +    +  +V      L   E  IL  LM N  +RV K +I 
Sbjct: 138 LSSSGGAVEQDLFVNGILLSPSSQLAKVDDVELTLTTTEFLILRLLMLNAAQRVTKEEIS 197

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I G   +A +   ++ H+S LRKK+      + + + R +GY +
Sbjct: 198 LKILGKPLQAFD-RSIDMHVSNLRKKIGAVAVDEKIKTIRGVGYML 242


>gi|303241326|ref|ZP_07327831.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302591165|gb|EFL60908.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 229

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +G +     +G   ++ F+    E+   +  + D+  ++  L       
Sbjct: 4   ILIVEDDVALSNGIVLAMKKEGFEFIQCFDKKSAEKEF-ACQKFDLIILDINLPD--GSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L+  +I+R  S VP+I ++        +  F+ G +D + KP     + AR+ A  R+  
Sbjct: 61  LDFCQIVRNSSDVPVIFLTANDMEIDVVTGFEIGANDYITKPFSLAILRARILAQLRKPT 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K  + +     I    D       G+   L + E+++L  L+ NRG  + +  +   ++
Sbjct: 121 EKTKSGKYTVNGIYFDFDAMLFTKNGKEIELSKTEQKLLRILLENRGNILTRDTLIDRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
               + V EN +   I +LR KL +       + +   +GY
Sbjct: 181 SDGADFVNENALSVTIRRLRNKLEDDPSQPVYIQTVYGMGY 221


>gi|297157930|gb|ADI07642.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D A + +        +G  +E     +    L +  +  V  +   L   G   LE
Sbjct: 5   LLAEDDASISEPLARALRREGYEVEVRE--DGPTALDAGLQGGVDLLVLDLGLPGMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           + R +R      P++ ++       T+   D+G DD V KP    E+LARV A+ RR  +
Sbjct: 63  VCRRLRTEGHGFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAV 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    +  T  +R+  +     +  E   L  +E  +L  L+ + G+ V + Q+   ++ 
Sbjct: 123 ETQAQQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWD 182

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
               +     ++ HIS LRKKL  +      + + R +G+  +
Sbjct: 183 TTWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFE 224


>gi|228994834|ref|ZP_04154632.1| Response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228764942|gb|EEM13698.1| Response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 240

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 91/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            +++DD   + +    +   +G     +      E ++   R   D+  ++  L      
Sbjct: 13  ILIVDDEKEILNLLETVLKKEGFQ-HIYTYTTGAEGIRMCKRVQPDLIMLDIMLPD--LD 69

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + IR  + VP+  +S        +     G DD + KP   +E+  ++ A +RR 
Sbjct: 70  GYSVCQQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKIKAFFRRN 129

Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         + G I +            +  L  +E  IL +L+ N  +  +K +++ A
Sbjct: 130 QYQEKARIMYQFGDITIDEAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKARLYEA 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           ++G       +N++  H+  LR+K+ +       + + R LGY ++
Sbjct: 190 VWGET-YLGNDNIMMVHMRHLREKIEDNPSNPHYLVTVRGLGYKLN 234


>gi|160897159|ref|YP_001562741.1| two component heavy metal response transcriptional regulator
           [Delftia acidovorans SPH-1]
 gi|160362743|gb|ABX34356.1| two component heavy metal response transcriptional regulator,
           winged helix family [Delftia acidovorans SPH-1]
          Length = 227

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 100/226 (44%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D  +    D+G +++   +L+    L  +A +D   I    +  G   L
Sbjct: 3   ILIIEDDEKLVDQLVRGLDDEGFTVDF--ALDGISGLNKAATQDFDVIILDGMLPGIDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R   Q  ++ ++   S++  +    SG DD + KP    E++AR+  + RR   
Sbjct: 61  AVLAALRQSKQTAVLMLTARDSVEDRVTGLKSGADDYMVKPFAFSELVARIKVLLRRNPS 120

Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++            + +    +     G+   L  +E  +L  L+  +G+ +++ ++ S
Sbjct: 121 LSSAVNVATILRMHDLEIDLARQRAFRAGKKLDLSAKEYSLLILLIRRQGEVISRAELAS 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++ + +   E NVVE  I +LR K+        + + R +GY ++
Sbjct: 181 QVWSI-NFESESNVVEVAIRRLRMKIDEPFDKPLLHTIRGMGYILE 225


>gi|258620420|ref|ZP_05715458.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
 gi|258626035|ref|ZP_05720891.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
 gi|262166718|ref|ZP_06034455.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|262170359|ref|ZP_06038037.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|297581549|ref|ZP_06943472.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
 gi|258581686|gb|EEW06579.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
 gi|258587299|gb|EEW12010.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
 gi|261891435|gb|EEY37421.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|262026434|gb|EEY45102.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|297534387|gb|EFH73225.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
          Length = 240

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGLS 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R +R  +  +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSAEETVIEFGDFRLNLGTREMFRGEEPMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|27367654|ref|NP_763181.1| DNA-binding response regulator [Vibrio vulnificus CMCP6]
 gi|27359226|gb|AAO08171.1| DNA-binding response regulator [Vibrio vulnificus CMCP6]
          Length = 218

 Score =  211 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+    +      G +++     +      +   ED +A+   L       L
Sbjct: 3   LLLIEDDTLLGQSMVTSLSRHGYTVDWLE--KGSGVTSALKTEDFTAVILDLTLPDIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R IR A   +P++ ++    ++  +   D G DD + KP    E+LAR+  + RR  
Sbjct: 61  DVLRNIRSAGFSLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E G + +    +    Q  V  L R E +IL  LM N G+ ++K Q+  +++G
Sbjct: 121 GSATEVIEVGELSLSLSEQSIRYQEVVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLHG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D++  +N +E HI  LRKK        P+ + R +GY I+
Sbjct: 181 -WDDSASDNAIEVHIHNLRKK----APNVPIKNIRGVGYIIE 217


>gi|310822156|ref|YP_003954514.1| DNA-binding response regulator PhoP2 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395228|gb|ADO72687.1| DNA-binding response regulator PhoP2 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 241

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++ G      D+G  +    S    + L      ++  ++  L   GE   
Sbjct: 14  ILIVEDDANLRLGLQDNLQDEGYEVATAASTAEADALLREREFELLILDVMLP--GEDGY 71

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +R A  +  ++ ++     +  L  F++G  D + KP   RE+LARV A+ RR+ 
Sbjct: 72  AFCRRLRGAGLRSMVLMLTARTLEEDILRGFEAGAQDYLTKPYRLRELLARVRALVRRVG 131

Query: 121 VSNNRAE-TGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +        +    R      G +  L R E  +L +L+ ++ + + + +I  A++
Sbjct: 132 SPPAQLMGFAGFSLDLGRRQLSRTGGALIELTRTEFDLLVFLLRHQDRALPRQEILDAVW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G  D  V+   V++ +S L+KKL         + + R +GY ++
Sbjct: 192 GQ-DVVVDPRTVDNFVSNLKKKLGWTSTSGFTIHTIRGVGYRME 234


>gi|307729779|ref|YP_003907003.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307584314|gb|ADN57712.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 219

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G  A     G +++             +    +  ++  L       +E
Sbjct: 4   LLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKASLALDTTSYALVVLDLGLPRVP--GME 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L R +R A   VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR + 
Sbjct: 62  LLRRLRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQG 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        + V    +  EV G    L  RE  IL  L+ N+G   +++++  ++YG 
Sbjct: 122 RSVELIRYRDLSVNPAAQAVEVAGRRVSLTSREWAILLQLLTNQGIPQSRSRLEESLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E +E N +E H+S LRKKL    G + + + R +GY ++
Sbjct: 181 WQEEIESNAIEVHVSNLRKKL----GANLIRTVRNIGYVVE 217


>gi|255528289|ref|ZP_05395103.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508024|gb|EET84450.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 224

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   + +  +A+   +  S++  +N  +  E+  S    DV  ++  +       
Sbjct: 3   ILLAEDEKELSNALVAILKHNNYSVDAVYNGADALEYGLSQ-NYDVIILDIMMP--KMNG 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE    +R      P++ ++    ++  +   D+G DD ++KP    E+LARV A+ RR 
Sbjct: 60  LETLENLRKKGIHTPILMLTAKAEIEDRIVGLDAGADDYLSKPFAMGELLARVRAMTRRK 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + + N  + G I +  +  +   +     L  +E ++LE LM+N    ++  Q    I+
Sbjct: 120 SEFTPNLVKVGNISLNKENYELSNEKSSLRLGNKEFQMLEMLMSNPKCLISTEQFMERIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G +D   E NVV  +IS LRKKL +      + + R +GY+++
Sbjct: 180 G-YDAEAEINVVWVYISYLRKKLASLNANIKIKAGRGIGYTLE 221


>gi|182417947|ref|ZP_02949257.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237669309|ref|ZP_04529291.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378256|gb|EDT75790.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237655196|gb|EEP52754.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 235

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD A + D    L   DG  +   ++ +    + S A E  S I   +        
Sbjct: 10  ILIADDDAEILDILSILLSGDGYDITTASNGDE---VVSLADESFSLIVLDVNMPKLSGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  +  P++ ++           F +G DD ++KP  + E L RV A+ RR   
Sbjct: 67  LACSEIRKKTMAPILFLTARTQESDKAIGFSAGGDDYLSKPFSNAEFLMRVKALIRRYSQ 126

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + SN       + + +D +   V G + PL   E  ILE L  NR K  +   I
Sbjct: 127 YGSIPTQQSNPILLVSDMVINTDEKTVSVDGVLIPLTSTEYDILELLALNRKKIFSMENI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +S+I+        +N +  HI  LRKK+  N      + +    GY I
Sbjct: 187 YSSIWNDSYIGASDNAIMVHIKNLRKKIEKNPKEPKYIKTSWGRGYYI 234


>gi|124515849|gb|EAY57358.1| putative two component transcriptional regulator, winged helix
           family [Leptospirillum rubarum]
          Length = 231

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 92/226 (40%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +       F  +   +    +      L  +   D+  ++  L   G   L
Sbjct: 5   ILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLP--GLDGL 62

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R ++       +P++ ++        +   + G DD + KP + +E+LAR+ AI RR
Sbjct: 63  SVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRR 122

Query: 119 LKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +        R     + +     +      +  L  +E  +L  L+ N G+ + +  + 
Sbjct: 123 TEQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQMLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G  D    +  V+ HI +LRKKL +    D V + + +GY  
Sbjct: 183 DLVWGA-DYEGTDRTVDVHIRRLRKKLGDY--QDRVQTVKQIGYKF 225


>gi|332160832|ref|YP_004297409.1| transcriptional activator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665062|gb|ADZ41706.1| transcriptional activator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862712|emb|CBX72855.1| transcriptional activator protein czcR [Yersinia enterocolitica
           W22703]
          Length = 224

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 6/220 (2%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D            G+ G S++   S    E L  +   D  AI   ++  G     +  
Sbjct: 2   EDEEKTSSYLSRALGESGFSVDI--SANGAEGLHYALEYDYDAIILDVMLPGMDGYRVLE 59

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-- 123
            IRA  Q P++ +S   S+   +       DD + KP    E++AR+ A+ RR       
Sbjct: 60  GIRASKQTPVLMLSARGSVDERVKGLRLDADDYLPKPFSLIELVARIQALVRRRSTDGAD 119

Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             + +   + +    R     G    L  +E  +L  L  ++G+ ++K  I   ++ + +
Sbjct: 120 ITQLQIHDLHLDLLARRVFRTGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQVWDM-N 178

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              + NVVE  I +LR K+        + + R +GY ++ 
Sbjct: 179 FDSDANVVEVAIKRLRDKIDAPFEVKLLHTVRGMGYVLEV 218


>gi|291442113|ref|ZP_06581503.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345008|gb|EFE71964.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 228

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 13/226 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEKV 60
           ++++D   V+          G  +  F     EE L+     R DV  ++  L   G   
Sbjct: 5   LIVEDDLDVRRAVQLGLRHQGHEV--FAVETGEEGLEQLLPFRPDVVVLDLMLP--GMSG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R IR   QVP+I ++        +   ++G DD V KP+  R + AR+ A+ RR  
Sbjct: 61  LDVCRRIRDRDQVPIIMVTARGDDVDVVVGLETGADDYVVKPVQARVLDARIRAVLRRQD 120

Query: 121 VS-----NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            S       RAET G + V   G     +GE   L   E R+L  L A+ G+  ++ Q+ 
Sbjct: 121 ASLPDGTRPRAETHGELVVDRAGLVVTHRGEPVALAPSELRLLLTLSASPGQVFSRQQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            A++       +  +V++ + +LR KL        V + R  GY  
Sbjct: 181 EAVW-EHSYHGDIRLVDACVKRLRNKLGEGRNPRYVQTVRGFGYRF 225


>gi|315648883|ref|ZP_07901977.1| two component transcriptional regulator [Paenibacillus vortex V453]
 gi|315275564|gb|EFU38918.1| two component transcriptional regulator [Paenibacillus vortex V453]
          Length = 219

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + D         G    + +N  +  ++L+   + D+  ++  L   G   
Sbjct: 4   ILVVEDEKSINDLITMNLKLVGHHFCKSYNGTDVIQFLK-QEKFDLILLDIMLP--GMDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + IRA+  +P+I ++   SL   +  F+ G +D + KP    E+LAR+  + RR K
Sbjct: 61  FELMQHIRAY-NIPVIFLTAKESLSDRITGFELGAEDYIIKPFEIVELLARINVVLRRAK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++    G   V    R      +   L  RE  +LE L+ NR   +++ ++   ++G 
Sbjct: 120 PSDDLFVLGEAEVKLLERQVLKNDQPVELTAREFDLLEVLIRNRNIALSREKLLELVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   E   V+ HI +LRKKL      + + +   LGY ++
Sbjct: 179 YDFLGETRTVDVHIRQLRKKL---GWEERIVTIFKLGYRLN 216


>gi|300783660|ref|YP_003763951.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793174|gb|ADJ43549.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 237

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G   +   +   +  L  +A      +   L+       
Sbjct: 9   LLVVDDEPHIADLVATVARYEGW--QAVTAGTGQTALSRAAEFGPDIVVLDLMLPDLDGF 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            +   +RA    VP++ ++   +    +     G DD + KP    E++AR+ A+ RR  
Sbjct: 67  TVLDRLRAGGNAVPVVFLTAKDATADRIAGLTRGGDDYLVKPFSVEELMARLRAVLRRSA 126

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +        G + +  D R+      +  L   E  +L YLM      + K QI
Sbjct: 127 GLAHQPEARGAVLRVGDLTLDEDTREVRRGERLAELTPTEYELLRYLMRRSPAVLTKAQI 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++  +D     NVVE  IS LR+K+    G   + + R +GY +
Sbjct: 187 LDHVW-EYDFGGRSNVVELVISHLRRKVDTGDGEPLIHTVRGVGYVV 232


>gi|291539027|emb|CBL12138.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 224

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++         +G  +    + +  E ++   +ED   I   ++       
Sbjct: 4   ILVVDDEDKIRAIIRKYGEFEGYEI--AEAHDGMEAVEICRKEDFDLIILDVMMPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
              R IR   ++P+I +S        +  F+ G+DD V KP   RE++ RV  +  R   
Sbjct: 62  STCREIRKFKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNNK 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             ++  +   +   + V   GR   V G+   +  +E  +L YL+ NR   + + ++ + 
Sbjct: 122 KDVRDGHEIFQAEGLVVDFTGRTVTVDGKRVEMSPKEYELLFYLVRNRNIALDREKLITE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++G +D   ++  +++HI  LR  L        + + R +GY  +
Sbjct: 182 VWG-YDYYGDDRTLDTHIKLLRSSLGEY--RKFLVTLRGVGYRFE 223


>gi|270261000|ref|ZP_06189273.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044484|gb|EFA17575.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 223

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 95/221 (42%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     D      G+ G S++   +     +       D   ++  L   G    
Sbjct: 3   ILVIEDDISTGDYLKKGLGEAGYSVDLARNGTDGLFRALEHGYDAIVLDVMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++  ++R  S VP++ ++    +Q  +   + G +D + KP    E++ R+  + RR  V
Sbjct: 61  QIVEVLRKKSDVPILFLTARDGVQDRIHGLELGAEDYLIKPFSFTELVLRIRTLLRRGTV 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      +++    R    Q  V PL  +E  +L  L+   G+ +++T I S ++ +
Sbjct: 121 READHYSLADLQLDVLRRKAVRQDVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV+  I +LR K+        + + R +GY  +
Sbjct: 181 -NFDSDTNVVDVAIKRLRAKIDRPFAIKLIHTVRGIGYVCE 220


>gi|326202731|ref|ZP_08192599.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987315|gb|EGD48143.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 101/225 (44%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   +++  +      G  +    S E    + Q+    D+  ++  L   G    
Sbjct: 5   LIVEDEEDIREFIVINLKRTGFEVVEAESGEEALAIIQNEKNLDIMLLDIMLP--GIDGY 62

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +  R + S + +I ++        +     G DD + KP    E++AR+ AI RR+ 
Sbjct: 63  KVLKKTRENNSSIGVIMLTAKSQEIDKVTGLSYGADDYIVKPFSPIELIARIDAILRRIN 122

Query: 121 VSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             NN        +G  ++  + +    + +   L + E  ++E  + N GK +++ +I  
Sbjct: 123 NVNNIENKKILTSGIFKLDLESKRFFKEDKEIELTQTEFLLIELFLKNEGKVLSRNEILD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +++G  D   +  VV+ ++ ++R+K+  +    + +++ R  GY 
Sbjct: 183 SVWG-SDYFGDIKVVDVNMRRVRQKVENDSSSPEYINTVRGFGYK 226


>gi|288919562|ref|ZP_06413892.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288349068|gb|EFC83315.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 243

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 19/225 (8%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AH 70
           ++        +G  +    + +  + L    RE +  +   ++      LE  R +R   
Sbjct: 13  RESLERSLRFEGYEVR--TAADGVDALDLVGREQLDIVVLDVMMPRMDGLETCRRLRGRG 70

Query: 71  SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-------- 122
           + VP++ ++   +L   +   D G DD + KP    E+ AR+ A+ RR  ++        
Sbjct: 71  NDVPVLMLTARDALADRVSGLDVGADDYLVKPFALEELFARLRALIRRATLTTRGAAGQG 130

Query: 123 -------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   +      +R+    R          L + E  +LE  +++  + ++++ I  
Sbjct: 131 QAADRDGASALLYSDVRLDPVSRQVLRGPRELTLTKTEFELLELFLSHPRQVLSRSTIME 190

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G +D     N +E  +S LR+KL        + + R +GY +
Sbjct: 191 KVWG-YDFGPSSNSLEVFVSYLRRKLEADGEPRLLHTVRGVGYVL 234


>gi|46201677|ref|ZP_00054581.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 234

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 6/219 (2%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           ++D  L+     A+   +G+ ++   +   E+ L+     D   I   L+       E+ 
Sbjct: 2   VEDDQLMSRAIEAMLKAEGMVVD--TTALGEDGLEIGKLYDYDIILLDLMLPDMDGYEVL 59

Query: 65  RIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VS 122
           R +R A  + P++ +S        +    SG DD + KP    E++AR+ AI RR K  +
Sbjct: 60  RRLRSARIETPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSKGHA 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
            +  +TG + V  D R   V G+   L  +E  ILE L   +G+ + K Q  + +YG  D
Sbjct: 120 QSVIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYGGID 179

Query: 183 EAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           E  E  +++  I KLRKKL     G   +++    GY +
Sbjct: 180 E-PELKIIDVFICKLRKKLATATGGESYIETVWGRGYVL 217


>gi|319934752|ref|ZP_08009197.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
 gi|319810129|gb|EFW06491.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
          Length = 231

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 97/229 (42%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D         G  +   N+ +    + S+    ++ ++  +       ++
Sbjct: 6   LVVEDEIEICDAIEIYLKTQGYHVYKANNGQEGLNIISNQTIHLAIVDIMMPI--MDGIQ 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   +R +   P+I +S        +   + G DD V KP    E+LARV++  RR    
Sbjct: 64  MTMKVRENYDFPIIMLSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVSSQLRRYSRY 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   N    G + +  D +   V+G++  +   E +IL+ LM   GK  +   I
Sbjct: 124 LNVILDQQHENSYVVGGLELNLDTKQVTVEGKIIKVTPIEFKILQLLMEYPGKVFSADNI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +++   ++A+  + V  H+  LR+K+  +      +     +GY I+
Sbjct: 184 YESVWQ--EDAISTDTVMVHVRNLREKIEIDPKNPRYLKVVWGVGYKIE 230


>gi|229099488|ref|ZP_04230416.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|229105646|ref|ZP_04236279.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|229118506|ref|ZP_04247860.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228665076|gb|EEL20564.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228677782|gb|EEL32026.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228683784|gb|EEL37734.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 216

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 99/221 (44%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPD--IDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LK 120
           +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR      
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++G 
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL        + + + +GY I+
Sbjct: 179 YEHFGDVRVIDTHIKNLRKKLE----IPYIKTVKGIGYKIE 215


>gi|226311091|ref|YP_002770985.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094039|dbj|BAH42481.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 255

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     A    +   +E   + E  E    S    +  ++  L   G    
Sbjct: 32  ILIVEDELPISRVLKAYLEKNNFRVEQAFNGEEAERKFDSHSPALVLLDVMLP--GRSGW 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IRA S  P+I ++    +   L   + G DD + KP    E++ARV A+ RR K 
Sbjct: 90  SILEYIRAKSSCPVIMLTALGQIDNKLAGLNKGADDYITKPFIADEVVARVHAVLRRSKQ 149

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N+  + G ++V        + G       ++  +  +L   + +   + Q+   ++
Sbjct: 150 LIEGNHVKQFGSLKVDFKAYSVMLHGIELAFTPKDLCLFLFLAQYKNQTFTREQLIEQVW 209

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G+ D    +  V+  I ++R+ L N       + + R LGY +
Sbjct: 210 GM-DYEGSDRAVDLAIKRIRRSLENWPTSEGEIRTYRGLGYKL 251


>gi|184158807|ref|YP_001847146.1| response regulator [Acinetobacter baumannii ACICU]
 gi|332875177|ref|ZP_08443010.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6014059]
 gi|183210401|gb|ACC57799.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|322507380|gb|ADX02834.1| Putative two-component response regulator [Acinetobacter baumannii
           1656-2]
 gi|323518722|gb|ADX93103.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332736621|gb|EGJ67615.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6014059]
          Length = 220

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D     +   +    DG  ++     ++          D   ++  L    GEKV
Sbjct: 3   ILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGEKV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  R+  
Sbjct: 63  LTTIRH--KQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  A+Y 
Sbjct: 121 LNQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E  I +LRKK+    G   + + R LGY +
Sbjct: 180 AWGEEIESNAIEVFIYQLRKKI----GSSSIKTIRGLGYRM 216


>gi|239918670|ref|YP_002958228.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415113|ref|ZP_06246855.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839877|gb|ACS31674.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 254

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 100/222 (45%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD  ++ D     F   G  +   +       L ++ R D++ ++  L       L+
Sbjct: 34  LVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVELGTAGRPDLAILDVMLPD--MDGLD 91

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RAH S++P + ++   + +  +    +G DD V KP    E+L R   + +R  V
Sbjct: 92  VLERLRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLVQRSGV 151

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + + +   +    G+   L   +  +L++LMAN    ++K +I   ++
Sbjct: 152 VSGGSEVLVVGDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERILQDVW 211

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G +D     N+VE +IS LRKK+        + + R  GY I
Sbjct: 212 G-YDFGGRANIVELYISYLRKKIDADRDP-MIHTIRGAGYVI 251


>gi|50085344|ref|YP_046854.1| putative two-component response regulator [Acinetobacter sp. ADP1]
 gi|49531320|emb|CAG69032.1| putative two-component response regulator [Acinetobacter sp. ADP1]
          Length = 218

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++ +D     +   +    DG  ++  +  ++          D   ++  L    G++V
Sbjct: 3   ILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGDQV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R  +  S  P+I I+   S+   +   D G +D + KP    E+ AR+ +  R ++
Sbjct: 63  LLTLR--KHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ 120

Query: 121 VSNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +       I + +  +  ++ GE+  L  +E ++L  +M N  + V + Q+ S +Y 
Sbjct: 121 QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE +E N +E  I +LRKK+    G + + + R LGY +
Sbjct: 181 WGDE-IESNAIEVFIYQLRKKI----GTNYIKTIRGLGYRM 216


>gi|319793239|ref|YP_004154879.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595702|gb|ADU36768.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 219

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 108/221 (48%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +  + L   +  +++     E  E    + + D+  ++  +  +    L
Sbjct: 3   LLLLEDDVMIGEAVLDLLRAEQYAVDWVKDGEAAESALRTQQYDLVLLDLGVPRR--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  Q +P++  +   S+Q  ++  D+G DD V KP    E+LAR+ A+ RR  
Sbjct: 61  EVLRSLRARKQRMPVLIATARDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +    E   + +    R+  V G+   L  RE  ++E L+A  G  +++ Q+   +Y 
Sbjct: 121 GRAEPVYEHMGVSINPATREVTVAGQPVVLSAREWAVIEPLLARPGMVLSRAQLEEKLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE +  N VE ++  LRKKL    G + + + R +GY +
Sbjct: 181 WKDE-ISSNAVEVYVHGLRKKL----GAEFIRNVRGVGYMV 216


>gi|222100288|ref|YP_002534856.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Thermotoga neapolitana DSM 4359]
 gi|221572678|gb|ACM23490.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Thermotoga neapolitana DSM 4359]
          Length = 226

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 7/218 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D   ++         +G   +   SL   +   S    +V  ++      G  + E
Sbjct: 6   LIAEDDEDIRGVLKRYLEAEGYECDEAGSLFDLKKKLSEGAYNVLILDLMFPD-GVAMEE 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +P +  +H ++ +I +S        +   + G DD V KP + RE++ARV A+ RR+   
Sbjct: 65  IPEMKVSHPEMAIIIVSARDRDMDRIFGIELGADDYVTKPFNPREVIARVKAVLRRMGKD 124

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
                 G + +F +       G    +  +E  +L+ L +   K  ++ +I + I+G  D
Sbjct: 125 QKVLRFGKLEIFPEDYVVRYDGRNVEMTAKEFELLKLLASAPNKIFSREEILNRIWG--D 182

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + V + VV+ HIS +R K+    G + + + R LGY  
Sbjct: 183 DYVSDRVVDVHISAIRSKI----GKNWIKTVRGLGYKF 216


>gi|218245356|ref|YP_002370727.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257058392|ref|YP_003136280.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218165834|gb|ACK64571.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256588558|gb|ACU99444.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 234

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 90/235 (38%), Gaps = 16/235 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +    +  +       L    + D+  ++  L       L
Sbjct: 3   ILIVEDAPEIANLIQETLERESFICQIASDGLAALELFKRQQPDLIILDLMLP--KLDGL 60

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   IR  S      ++ ++        +    +G DD + KP    E++ARV A+ RR
Sbjct: 61  EVCTRIRQTSTNKDPYILMLTAKGEAIDRVIGLSTGADDYLVKPFSPIELVARVRALLRR 120

Query: 119 L----KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVA 169
                    N  +T    V  D      +      E   L   E  +L   M+  G+  +
Sbjct: 121 SLRHGGQPKNVYQTAHFIVDLDRHIATRKLDNESEETLELTTLEFSLLSTFMSYPGRVWS 180

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
           ++Q+   ++G  D   +E VV++HI +LRKK+         + +   +GY  + N
Sbjct: 181 RSQLIEKLWG-DDFFGDERVVDTHIRRLRKKIEPDTANPTFIKTVVGIGYKFEDN 234


>gi|320181895|gb|EFW56801.1| Two-component system response regulator OmpR [Shigella boydii ATCC
           9905]
          Length = 239

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ +  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQNNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|288961886|ref|YP_003452196.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288914166|dbj|BAI75652.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 230

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 89/227 (39%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   ++D        +G ++           L  +   D+  ++  +        
Sbjct: 4   ILLIDDDPHIRDIVRFALKREGFAVVEAGDGVQGLALAQADSPDLILLDIGMPE--IDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R  S+VP+I +S        +   + G DD V KP   RE+ ARV A+ RR   
Sbjct: 62  EVCRRLRRESRVPIIFLSSRDDEIDRILGLELGGDDYVTKPFSPRELTARVKAVLRRVVP 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +          +R+  DG           L   E  +L  L    GK  ++  +
Sbjct: 122 PEPPVPEGPAPVLRNNRLRLDLDGVRAFWDEMEVVLTATEFCLLRTLADRPGKVFSRDAL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               Y   +  V +  V+SHI ++R K +   G  PV++   LGY +
Sbjct: 182 MDGTYAT-ERYVADRTVDSHIRRVRAKFQAVGGA-PVETVHGLGYKL 226


>gi|229014220|ref|ZP_04171341.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
 gi|229076416|ref|ZP_04209380.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18]
 gi|229135864|ref|ZP_04264632.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|229169751|ref|ZP_04297451.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228613790|gb|EEK70915.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228647604|gb|EEL03671.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|228706703|gb|EEL58912.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18]
 gi|228747174|gb|EEL97056.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
          Length = 216

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 99/221 (44%), Gaps = 11/221 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D   +++           +++   +      L      D+  ++  L         + 
Sbjct: 2   IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPD--IDGYSIC 59

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LK 120
           +I+R  S VP+I ++   + ++ +  F+ G+DD + KP H+   + RV A+ RR      
Sbjct: 60  KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    +   + + S      V G    L  +E  I+  L+ NRGK ++++ + + ++G 
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   +  V+++HI  LRKKL        + + + +GY I+
Sbjct: 179 YEHYGDVRVIDTHIKNLRKKLE----IPYIKTVKGIGYKIE 215


>gi|218709844|ref|YP_002417465.1| DNA-binding response regulator [Vibrio splendidus LGP32]
 gi|218322863|emb|CAV19040.1| DNA-binding response regulator [Vibrio splendidus LGP32]
          Length = 219

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    I          E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDEPRLGQQIIDTLEGADWVPELSQDGIDALYRATSEEWDAIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P+I +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S     + G + + +       QG+   L   E +++ Y M N+ K +++T++   IY 
Sbjct: 121 GSAAPILQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N VE  I ++RKK+  K+    + + R LGY ++
Sbjct: 181 Q-DFDRDSNTVEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|134093754|ref|YP_001098829.1| two-component regulatory system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133737657|emb|CAL60702.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Herminiimonas arsenicoxydans]
          Length = 229

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++++D   + +       D   ++    S+     L       +  ++  L  + G ++
Sbjct: 8   ILVVEDELSIVELLRFTLEDANWNVVAAGSVAAAWDLIQIRPPHLILLDWMLPDQSGLQL 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L   R  R    +P+I ++     +  +   ++G DD V KP   RE++ARV  + +   
Sbjct: 68  LSRVRESRQFRGLPIIMLTAKSMEEDKVTGLENGADDYVTKPFSPRELIARVTVLLKHKV 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + +    + GPIR+    R   V  +   +   E ++L+YL+A+     ++ Q+   ++
Sbjct: 128 PEHAQETMKAGPIRLDPASRMVSVGTKNITIGHAEFKLLKYLLAHPNHVYSRDQLIDRVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G    A++E  V+ ++ +LRK L    G   + + R +GY +
Sbjct: 188 GRH-IAIDERTVDVNVLRLRKVLGE--GRYLIKTVRGVGYML 226


>gi|115374028|ref|ZP_01461317.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
 gi|310819375|ref|YP_003951733.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115368918|gb|EAU67864.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
 gi|309392447|gb|ADO69906.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       +G  +                  D+  ++  L        
Sbjct: 8   ILVVEDDLSILTGLSINLRIEGYDVLQAQDGRVGLAKALDEAPDLVVLDIMLPE--LNGF 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R      P++ +S        +   + G DD V KP   +E+LAR+ A+ RR  
Sbjct: 66  DVLKELRQRGRDTPVVMLSAKGMEPDKILGLNLGADDYVVKPFGLQELLARIKAVLRRRH 125

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++       G + V   G+     G+   L  +E ++L + +A+ G+  ++ ++ S  +
Sbjct: 126 PASGAPPVTFGDVEVDMVGKTVARAGKAVELTAQEFKLLTHFLAHPGRTFSREELLSGAW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
           G FD       V++ + +LR K        P    + R LGY  D
Sbjct: 186 G-FDYEGSARTVDNFVRQLRLKFEPDPEA-PRHFLTIRGLGYRFD 228


>gi|88807565|ref|ZP_01123077.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788779|gb|EAR19934.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 246

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 99/230 (43%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +L+DD A + D        +G  +          +        D+  ++  L       
Sbjct: 11  ILLVDDEARLTDLLKMELEVEGYDVIVAADGASGLFHARETPGPDLIVLDWNLPDF--SG 68

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +++ + IR+     P++ ++ +  +   +   D+GVDD + KP    E++AR+ A+ RR 
Sbjct: 69  IDICQRIRSSGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRAMQRRA 128

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                           + G + + +  RD      +  L  +E  +L +LM  +GK + +
Sbjct: 129 ITFSAINGDGPQPETLKVGNLSMNTSTRDVSRGDRLIQLSVKEYELLNFLMRGQGKVLTR 188

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I   ++G  +   ++N+++ +I  LR+KL +K     + + R +G+ +
Sbjct: 189 ADIMRGVWGE-NFYGDDNLLDVYIRYLRQKLESKDLPTLIHTVRGVGFIL 237


>gi|327402108|ref|YP_004342946.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327317616|gb|AEA42108.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 229

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A++         ++ + +E        E +      D   ++  L   G+   
Sbjct: 4   ILLVEDDAILSRNISDALLEENMQVEFAYDGNIAEKMLKKTNFDCVILDVNLP--GKNGY 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ +  R+ ++Q P+I ++ +  L+  +  +D G DD + KP + RE+L R+ ++ +R  
Sbjct: 62  KICKNFRSYNTQTPVIMLTAFDELEDKIQGYDCGADDYLTKPFYMRELLLRIQSLLKRSE 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  NN      I + +  +    QG+   L  RE +IL  L+  +G+ V+K  + 
Sbjct: 122 NLGKNEFENNLLVADDIVINNASKKVTRQGKEVQLTPREFQILLKLVECKGELVSKQDLV 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I+G        N +E +I+ LR KL    G   + +K   GY  D
Sbjct: 182 KEIWGNI-VDANTNTIEVYINFLRGKLDKPFGKQSIKTKIGYGYYFD 227


>gi|27364306|ref|NP_759834.1| osmolarity response regulator [Vibrio vulnificus CMCP6]
 gi|320157697|ref|YP_004190076.1| two-component system response regulator OmpR [Vibrio vulnificus
           MO6-24/O]
 gi|27360424|gb|AAO09361.1| Two-component system response regulator OmpR [Vibrio vulnificus
           CMCP6]
 gi|319933009|gb|ADV87873.1| two-component system response regulator OmpR [Vibrio vulnificus
           MO6-24/O]
          Length = 239

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IELPGAPSAEEKIVEFGEFRLNLGTREMFRGDEPMPLTSGEFAVLKSLVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L         + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEEDPSKPRYIQTVWGLGYVF 232


>gi|197117560|ref|YP_002137987.1| winged-helix transcriptional response regulator KdpE [Geobacter
           bemidjiensis Bem]
 gi|197086920|gb|ACH38191.1| winged-helix transcriptional response regulator KdpE [Geobacter
           bemidjiensis Bem]
          Length = 235

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++    +    D   L   +S        ++ R D+  ++  L     + +
Sbjct: 12  ILVIDDEAAIRRFLHSALSSDEFILHEADSGHGGLSAAAALRPDLILLDLGLPD--LEGI 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R IR  SQVP+I +S        +   D+G DD + KP    E+LAR+ A  RR   
Sbjct: 70  EVIRRIREWSQVPIIVLSVREREDDKVAALDAGADDYLTKPFGVGELLARMRASLRRSAV 129

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++S     +G + V  + R   V+G    L   E  +L  L+ +  K +  +QI   I+G
Sbjct: 130 QLSEPVFSSGDLTVDLNLRRVTVEGAEVQLTPTEYDLLRLLITHADKVITHSQILKQIWG 189

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +  +  +  V+   IS LRKK+ R+      + ++  +GY  
Sbjct: 190 VAYQD-QPQVLRVTISNLRKKVERDPSRPRHITTEPGVGYRF 230


>gi|168703031|ref|ZP_02735308.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Gemmata obscuriglobus UQM
           2246]
          Length = 224

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61
           ++I+D     +       + G +++  +  +    L ++   ++  ++  L G+ G  VL
Sbjct: 4   LIIEDDTRTAEYLRKGLREAGFTVDIASRGDDGLHLAATGGYELVVLDIMLPGRDGWSVL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
              R   A  Q P++ ++   ++   +   + G DD + KP    E LARV ++ RR   
Sbjct: 64  AALRA--AGRQTPVLFLTAADAVTDRVRGLELGADDYLIKPFAFSEFLARVRSVLRRGTD 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + V +        G    L  +E  ++  +    G  +++T I   ++ +
Sbjct: 122 RRTDVLRVADLEVDTVRLAASRAGRKLDLTPKEFGLIALMARRAGDVLSRTVIAEQVWDM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   E NVV+ H+ +LR KL +      + + R +GY ++
Sbjct: 182 -NFDSESNVVDVHVRRLRAKLDDPYPTKLIHTVRGVGYVLE 221


>gi|53717517|ref|YP_105500.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|53722482|ref|YP_111467.1| two-component response regulator [Burkholderia pseudomallei K96243]
 gi|67640031|ref|ZP_00438853.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|76819653|ref|YP_335649.1| two component response regulator [Burkholderia pseudomallei 1710b]
 gi|124382891|ref|YP_001024486.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126443643|ref|YP_001063069.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126447886|ref|YP_001078807.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126457711|ref|YP_001076011.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|167002751|ref|ZP_02268541.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|167744626|ref|ZP_02417400.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167820246|ref|ZP_02451926.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167828621|ref|ZP_02460092.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167850081|ref|ZP_02475589.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167898689|ref|ZP_02486090.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167907033|ref|ZP_02494238.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167915377|ref|ZP_02502468.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167923219|ref|ZP_02510310.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217425234|ref|ZP_03456729.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|254174447|ref|ZP_04881109.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254185252|ref|ZP_04891841.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254186777|ref|ZP_04893293.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254194369|ref|ZP_04900801.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254204224|ref|ZP_04910583.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254209196|ref|ZP_04915543.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254264284|ref|ZP_04955149.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254301543|ref|ZP_04968987.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|254355518|ref|ZP_04971798.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52212896|emb|CAH38932.1| putative two-component response regulator [Burkholderia
           pseudomallei K96243]
 gi|52423487|gb|AAU47057.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76584126|gb|ABA53600.1| two component response regulator [Burkholderia pseudomallei 1710b]
 gi|124290911|gb|ABN00181.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126223134|gb|ABN86639.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126231479|gb|ABN94892.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126240740|gb|ABO03852.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147745108|gb|EDK52189.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147750419|gb|EDK57489.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148023611|gb|EDK82673.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157811217|gb|EDO88387.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157934461|gb|EDO90131.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695493|gb|EDP85463.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|169651120|gb|EDS83813.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184215844|gb|EDU12825.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217391839|gb|EEC31866.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|238520671|gb|EEP84129.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|243061632|gb|EES43818.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254215286|gb|EET04671.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 219

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +   A    DG   +   SL       + A  D+      L+    + L+
Sbjct: 4   LLVEDDPWLGEAVRAQIEKDGHPTDCVASLAHARRHVAVAPYDLIL--LDLLLPDGRGLD 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +RA  S VP+I ++    +   +   ++G DD + KP    E+ ARV+A+ RR   
Sbjct: 62  FLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARRYSG 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N   + G + V    R     G    L   E  +LE L+ + G  ++K Q+   +Y  
Sbjct: 122 NPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERLYSF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE V  N +E H+S+LRKKL    G + +++ R LGY +
Sbjct: 182 SDE-VGSNTIEVHVSRLRKKL----GAELIETVRGLGYRL 216


>gi|304436456|ref|ZP_07396430.1| two component response regulator IrlR [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370502|gb|EFM24153.1| two component response regulator IrlR [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 225

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   +      +   + +S+E            +    D+  ++  +   GE  ++
Sbjct: 4   LLAEDDLRLGKLIQYMLEQNDISVEWVTDGSDIYAYATYTEYDILILDWMMP--GESGVD 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              R+ R      ++ ++   S++  +   D+G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  ACARLRRNGYDRAILMLTARDSVEDRVKGLDAGADDYLVKPFEFSELLARLRALGRRSTQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ +   E G  ++       E  G++  L  RE ++ + L  N G  V +  I   I+G
Sbjct: 122 RIQHEVDEIGGFKLNRTANILEKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L +  V  N ++S++  LRKKL        + + R +GY ++
Sbjct: 182 L-EADVSSNNIDSYMKMLRKKLDAAGEGASIKTIRGVGYKLE 222


>gi|295837871|ref|ZP_06824804.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74]
 gi|295826712|gb|EFG64995.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74]
          Length = 274

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61
           +++DD   + +        +G  +                R D   ++  L    G  VL
Sbjct: 41  LVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGLSVL 100

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +L R  RA    P++ +++  +    +    +G D+ V+KP    E++AR+  + RR   
Sbjct: 101 QLMR--RAQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAGA 158

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S +    G + +  D  +    G    L   E  +L YLM N  + ++K QI   ++
Sbjct: 159 GRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 218

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + NVVE +IS LR+K+ ++     + ++R  GY I
Sbjct: 219 -SYDFGGQANVVELYISYLRRKI-DRGREPMIHTRRGAGYLI 258


>gi|306821334|ref|ZP_07454943.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550621|gb|EFM38603.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 227

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +      L  ++      F+  E          + D+  ++  L   G+  
Sbjct: 4   ILIVEDDNNINSLLCELLKNENSVTSAFSGTEAMMIFNSDVNKFDLILLDLMLP--GKSG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            ++ R IR  S VP+I ++      T +D  + G DD ++KP   RE+ AR  +  R+  
Sbjct: 62  EDIIREIRQVSAVPIIVLTAKGDTNTLVDILEMGADDYISKPFDVREVKARAKSHLRKKM 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +    R   V      L ++E  +L   +    +   K  +++ 
Sbjct: 122 DNHTFQEEVLKFEDLTLNISSRTASVGENPITLTQKEFDMLSLFLHEPKRVFTKEILYTK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G      ++N + +HIS+LR K++  +  D +D+   +G+ +
Sbjct: 182 VWGDM-YYGDDNTINAHISRLRSKIKEYMQKDIIDTVWGVGFRL 224


>gi|77919324|ref|YP_357139.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77545407|gb|ABA88969.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
          Length = 227

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D+  +           G +++   +      L  +   D+  ++  L   G   L
Sbjct: 3   ILIVEDQEDILQNIADYLHLHGFTVDCAQNGLGGLHLAVTLEFDLIILDIMLP--GMDGL 60

Query: 62  ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L R +R  +  Q P+I ++    L+  L  F +G DD + KP    E+ ARV A+ RR 
Sbjct: 61  TLCRKLRKEAGVQTPVIFLTARDKLEDKLAGFKAGSDDYLVKPFSLPELHARVEAVLRRS 120

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + V +NR +   +    D  +   QG+   L     ++LE LM      V +  +   ++
Sbjct: 121 QPVQSNRLQVADLVFDLDTLEITRQGKSLRLNPIGLKLLEKLMKCSPNVVRRETLQDILW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SHI  LR+ +        + +   +GY +
Sbjct: 181 G--DDVPDSDSLRSHIHLLRQTIDKPFATPLIHTIHGIGYCL 220


>gi|148547536|ref|YP_001267638.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148511594|gb|ABQ78454.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 233

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D + + +   +    +   ++     +         R D+  ++  L   G   L
Sbjct: 4   IFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLP--GIDGL 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R++R  SQ  P++ ++        +   + G DD V KP   R +LARV  + RR  
Sbjct: 62  QLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V+  R E      G +R+    R    +GE   L   E  +L  L  N G+ + + +I  
Sbjct: 122 VNEPRLENDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY---SIDW 222
            + G+ +    +  V+  ISKLR+K  +  G    + +    GY    ++W
Sbjct: 182 QLRGI-EFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEW 231


>gi|329766813|ref|ZP_08258343.1| hypothetical protein HMPREF0428_00040 [Gemella haemolysans M341]
 gi|328839324|gb|EGF88906.1| hypothetical protein HMPREF0428_00040 [Gemella haemolysans M341]
          Length = 216

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD  ++ +G     G  G  +  F + + E+ L+      V  +   ++  G+   
Sbjct: 3   ILIVDDEKIILEGISEYLGTQGYHI--FKAEDGEKALRVFRDNSVDLVILDIMLPGKTGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S VP+I +S     QT L  F    DD V KP     + +R+  +  R   
Sbjct: 61  EVLGEIRKTSNVPIILLSALNDEQTQLSGFALTADDYVIKPFSLPLLASRIKVLLNRHYG 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +         +         +G    +  +E  IL+ L+ N+ + +++ QI   ++   
Sbjct: 121 EHEIWTYKDAIIDFSSYTATFEGNSVDVKPKEIDILKLLLRNQNRVLSRGQIIEQLWNSL 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +E   + V++ ++  LRKKL    G D + + + +GY +
Sbjct: 181 EEPPLDRVIDVYVKNLRKKL----GLDCIVTVKNVGYKL 215


>gi|134296855|ref|YP_001120590.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134140012|gb|ABO55755.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 243

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG        G +++   +    +   S    D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLTRSLRQSGYAVDHVKTGVDADTALSMQSFDLLILDLGLP--KMSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ + +RA  S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G +     GR       V  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANERVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKK+        + + R LGY ++
Sbjct: 180 EWGEEVSNNAIEVYVHRLRKKIEPSG--VRISTVRGLGYCLE 219


>gi|311029188|ref|ZP_07707278.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 228

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 86/222 (38%), Gaps = 5/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +  G       +G        +   E        ++      L        +
Sbjct: 4   LIVEDDRTIAVGLEYSLRQEGYETILCPDVRSAESAIGEKLNEIDLCLFDLSLPDGSGYD 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   ++     P+I ++ +      +   D G DD + KP   RE+L+R+ ++ RR    
Sbjct: 64  LCEQVKKREDKPVIFLTAFDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYHKQ 123

Query: 123 NNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +     +   IR+ +        GE   L   E R+L     + G+ + + Q+   I+
Sbjct: 124 PEQVKSYIDIENIRINTLEGKVFKNGEEVLLTALEYRLLMIFANHIGQVLTRAQLLDRIW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
            +  + V +N +  +I +LR+KL +       + + R +GY 
Sbjct: 184 DVAGDFVNDNTLTVYIKRLREKLEDNPQSPVIIRTVRGMGYK 225


>gi|300854069|ref|YP_003779053.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300434184|gb|ADK13951.1| predicted response regulator (CheY-like receiver domain and HTH
           DNA-binding domain) [Clostridium ljungdahlii DSM 13528]
          Length = 226

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V D   A    +G  +    +      L +     +  ++  L        
Sbjct: 4   ILVIEDEIKVSDVIKAYLEREGYKVYCATTGLEGIRLFNKIEFKLVILDLMLPD--IDGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S V +  ++   +L   L   + G D+ + KP   RE+ ARV A++RRL  
Sbjct: 62  EVCSTIRRISNVHIFMLTAKVTLSDKLQGLNIGADEYLTKPCSPRELTARVNALFRRLSS 121

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +      +  G + +  D R  +++GE   +   E  IL  L  NRG+ +++ Q+   ++
Sbjct: 122 AEEPEIISRDGLLVINHDKRCVKLKGEEIAMTPNEFNILYVLAKNRGRVLSRDQLIEQVF 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
           G+ D    +  ++ HI  +RKK+     F   + +   LGY  
Sbjct: 182 GI-DFEGSDRTIDVHIKNIRKKIERDTRFPKYIITVIKLGYKF 223


>gi|291551304|emb|CBL27566.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 231

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + +  E L+   +E+V+ +   ++      +
Sbjct: 4   ILVCDDDREIVEAIEIYLSQEGYQI--LKAYDGIEALEILEKEEVNLLIIDVMMPRLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 62  RATLKIREKNSLPIIILSAKSEDTDKILGLNIGADDYVTKPFNPLELVARVKSQLRRFNE 121

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               A+         G +++  D +   V GE   L   E  IL  LM N+GK  +  QI
Sbjct: 122 LGGTAQEPKETIYKVGGLQINDDLKQVTVDGEFVKLTPIEYNILLLLMKNQGKVFSINQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + +I+   +    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 182 YESIWNE-EAIGADNTVAVHIRHIREKIEINPKDPRYLKVVWGVGYKIE 229


>gi|253579017|ref|ZP_04856288.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849960|gb|EES77919.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +++  +              +        SS   D+  ++  L     + 
Sbjct: 5   LILVVEDDRPIRNLIVTTLKTHDYKYLAAENGSSAILEASSHNPDIVLLDLGLPD--MEG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ + IR  S +P+I IS        ++  D+G DD + KP    E+LAR+    RRL 
Sbjct: 63  VEVIKKIRTWSNMPIIVISARSEDTDKIEALDAGADDYITKPFSVEELLARIRVTQRRLA 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 ++ ++  E G +++        ++GE   L   E ++L  L  N GK +  T I
Sbjct: 123 VMQSGEQLESSVFENGGLKIDYTAGCTYLKGEELHLTPIEYKLLCLLSRNVGKVLTHTYI 182

Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
              I+G   D  V    +   ++ LRKKL   K G   + +   +GY +
Sbjct: 183 TQQIWGRCSDNDVAS--LRVFMATLRKKLEPEKNGVQYIQTHIGIGYRM 229


>gi|153816384|ref|ZP_01969052.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
 gi|145846272|gb|EDK23190.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
          Length = 240

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 11/230 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +      L   +G  +    + +  E L    +  V  I   ++      
Sbjct: 11  VVMVVDDNKEIVYSISELLKYEGYRV--IPAYDGMEALNLLEQNPVDLILLDVMMPRLNG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L     +R   ++P+I +S        +     G DD V KP +  E++ARV A  RR +
Sbjct: 69  LSALMKLREKYRIPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYR 128

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++++   G + +    R   V+GE   L   E +ILE LM + G+  +  Q
Sbjct: 129 AWGGELPKENDDQIINGGLVLDKKQRIVLVEGEEVRLTATEYKILELLMEHPGQVFSSEQ 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++        EN V  HI  +R+K+  +      V     +GY ++
Sbjct: 189 IYENVWQESANYTVENTVMVHIRHIREKIEIDAKKPRYVKVVWGIGYKME 238


>gi|119776642|ref|YP_929382.1| osmolarity response regulator [Shewanella amazonensis SB2B]
 gi|119769142|gb|ABM01713.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 241

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLVEQGFQVRAAANAEQMDRLLERENFHLLVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   S +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQTGSPLPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 QEIPGAPAQQEEEVGFGEFHLNLATREMYRGDESIALTSGEFAVLKVLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|326794087|ref|YP_004311907.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326544851|gb|ADZ90071.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 227

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 14/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +I+D   + +         G  ++ F+S E           D+  ++  L   G   
Sbjct: 3   LVYIIEDEIKIAEILSDYLIKYGYDVQLFHSGENAVTEIVKGNPDLVILDVMLPAVG--G 60

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+   +RA  ++VP+I ++        L+  + G DD V KP    E++ARV AI RR+
Sbjct: 61  FEICHQLRAMDNEVPIIMLTARVDESDRLEGLNIGADDYVCKPFLPNEVVARVNAILRRI 120

Query: 120 KVSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           K S                I +  +     V G    L   E ++L  +M    +  ++ 
Sbjct: 121 KKSQASASNEPTTLISYRNITIDIEKYLCFVSGVEIELTSVELKLLHTMMTRPKRIFSRE 180

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +    Y   D  V +  ++SH+  LRKKL        + +   +GY  +
Sbjct: 181 VLMDMCYD-DDRVVNDRTIDSHMRNLRKKLG--GSDSVIQTVYGVGYKCE 227


>gi|187927570|ref|YP_001898057.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|187724460|gb|ACD25625.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 236

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL---QSSAREDVSAIEAFLIGKGE 58
            ++ +D A + DG        G +++  +     +     Q++   D+  ++  L     
Sbjct: 3   ILIAEDDATLADGLTRSLRQAGYAVDQASDGATADAALSAQTAQTYDLLILDVGLPR--M 60

Query: 59  KVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LE+ + +R+   + P++ ++   S++  +   D G DD + KP    E+ ARV A+ R
Sbjct: 61  SGLEVLKRLRSRGAMLPVLILTAADSVEERVKGLDLGADDYMAKPFALSELEARVRALVR 120

Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R           GP+     GR   +  +V  L  RE  +LE L+A  G+ V+K Q+   
Sbjct: 121 RGTGGGATLVRHGPLAFDQVGRIAYIHDQVVELSAREIGLLEILLARVGRLVSKEQLVDH 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + G + E V  N +E +I +LRKK+   +    + + R LGY ++
Sbjct: 181 LCG-WGEEVSNNAIEVYIHRLRKKIE--VEGIRIATVRGLGYCLE 222


>gi|33597417|ref|NP_885060.1| putative two-component response regulator [Bordetella parapertussis
           12822]
 gi|33602158|ref|NP_889718.1| putative two-component response regulator [Bordetella
           bronchiseptica RB50]
 gi|33573844|emb|CAE38153.1| putative two-component response regulator [Bordetella
           parapertussis]
 gi|33576596|emb|CAE33674.1| putative two-component response regulator [Bordetella
           bronchiseptica RB50]
          Length = 223

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDD-GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D  ++ D        + G  ++        +         +  ++  L   G+  
Sbjct: 4   LLLVEDDPMLGDALQTALQRELGARVDWVRDGAQAQLALVDHAYQLILLDIGLP--GQSG 61

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L R +R      P++ ++    L   +   D G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  LALLRALREGYDTTPVLLVTARDQLSDRIRGLDGGADDYIVKPFELDELLARLRAVLRRS 121

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V    R     G    L + E R L  LM  RG+ V++ Q+   +Y
Sbjct: 122 HNQVAPLMRHGELLVDPAARQVSRAGRPVALSQSEYRTLLALMQRRGRTVSREQLEHDVY 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G    A+E N V  ++ +LR+KL    G D +++    GY I
Sbjct: 182 GAS-VALESNTVAVYVHQLRRKL----GDDLIETVHGYGYRI 218


>gi|308273635|emb|CBX30237.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [uncultured Desulfobacterium sp.]
          Length = 242

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        DG +++   S E    L  S   D+  ++  L G G   +
Sbjct: 17  ILVVDDEEDITELIRYNLASDGYTVKCAYSGEEAVKLAMSEPFDLIVLDLMLPGIG--GI 74

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + +R+      +P+I ++        +       DD V KP   + + AR++AI RR
Sbjct: 75  DVAKRLRSVHNTINIPIIMLTAKSEETDIISGLTL-ADDYVTKPFSPKILSARISAILRR 133

Query: 119 LKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +  S+         + G I + +  R  EV GE   L   E +IL  L    G   +++Q
Sbjct: 134 INDSSDDASDDKIIKRGDIVIHTGRRRVEVCGEPVELSFSEFQILIMLSKRPGWVFSRSQ 193

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G  D  V +  V+  I  LRKKL +      +++ R +GY  
Sbjct: 194 IVDTVHGE-DYPVTDRSVDVQIVGLRKKLGSCG--RYIETVRSVGYRF 238


>gi|163781991|ref|ZP_02176990.1| transcriptional regulator (PhoB-like) protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882523|gb|EDP76028.1| transcriptional regulator (PhoB-like) protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 223

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 13/228 (5%)

Query: 1   MFV-LIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M V +++D   +     A    +G  ++ F  +LEF   L+     D+  ++  L     
Sbjct: 1   MLVYILEDDEDIALVVEAALKREGFEVKSFQRALEFFPALEEKT-PDLVIVDVMLPD--L 57

Query: 59  KVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
               + R+++       VP++ ++   +    L  F  G DD + KP   RE+ ARV A+
Sbjct: 58  DGFRVARVMKNRPDLEDVPIVFLTARATEVDRLKGFHLGADDYITKPFSIRELTARVRAV 117

Query: 116 YRRLKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            RR+K          G + V  +     + G    L   E  IL  L+ N G+ V +++I
Sbjct: 118 LRRVKRGREGRVFRVGSLEVDVERVKVSIGGSEVKLTPSEFNILRCLLENYGRPVNRSRI 177

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              ++G  D    +  V+ HI  LR KL        + + R  GY  +
Sbjct: 178 IEEVWG-HDHEATDRTVDVHIKHLRDKLGAYG--KCIKTVRGFGYKFE 222


>gi|145223425|ref|YP_001134103.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145215911|gb|ABP45315.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 251

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    D        +      +      DV  ++  L   G   LE
Sbjct: 21  LVVDDELPLAEVVASYLERDQFEAVVAGNGVDAIAVARDFDPDVVILDLGLP--GIDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD + KP   RE++ARV A+ RR +V 
Sbjct: 79  VCRQLRTFSDAYVVMLTARDTELDTVLGLTVGADDYITKPFSPRELVARVRAMLRRPRVL 138

Query: 123 NNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +               G + V    R+  +  E   L R E  ILE L    G  +++ 
Sbjct: 139 QSATATAEREVAPPRRFGALSVDVAAREVGIDDEQILLTRTEFDILEALSGRPGIVLSRR 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+   +         E++V+ HI  LR+KL +       + + R +GY +
Sbjct: 199 QLLEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAARPRYIATVRGVGYRM 247


>gi|152965772|ref|YP_001361556.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151360289|gb|ABS03292.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 225

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+ D        +GV ++  +              DV  ++  L   G    E
Sbjct: 4   LLVEDEVLLADTVRRGLAAEGVEVDLAHDGPTGYRRAREHAYDVLVLDLMLP--GRNGYE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++        +D FD G DD + KP     +LAR+ A++RR   
Sbjct: 62  VCRDLRAAGVWTPVLVLTAKDGEYDQVDAFDLGADDYLTKPFSFPVLLARLRALHRRGAP 121

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                   G + +    R          L  RE  +LE+L+  R + V K +I  A++  
Sbjct: 122 ERPVVLRAGDLVLDPATRRVHRGETPLTLTAREFALLEFLLRRRDEVVPKAEILRAVWDP 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + + NVVE ++  LR+K+        + + R  GY +
Sbjct: 182 -EVSTDPNVVEVYVGYLRRKVDAPFARHALQTVRGAGYRL 220


>gi|257871018|ref|ZP_05650671.1| two-component system response regulator [Enterococcus gallinarum
           EG2]
 gi|257805182|gb|EEV34004.1| two-component system response regulator [Enterococcus gallinarum
           EG2]
          Length = 235

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G         +    L +   +    I    +      +
Sbjct: 5   ILIVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQTDLFDLILLDWMLPIYDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S +P++ ++        +   D G+DD + KP    E+ AR+  I RRL+ 
Sbjct: 65  TVARRIRKESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRLQR 124

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    N+   G + +       +V GE   L  +E  IL  LM        + ++ 
Sbjct: 125 EAQQQKNQQNQLVVGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDELL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + I+G ++   + NVV+ +I  LR KL        + + R LGY +
Sbjct: 185 NEIWG-YEYDGQTNVVDVYIRTLRNKLDVCGKGKMIATVRGLGYVL 229


>gi|238923173|ref|YP_002936686.1| two component transcriptional regulator, winged helix family
           [Eubacterium rectale ATCC 33656]
 gi|238925077|ref|YP_002938594.1| two component transcriptional regulator, winged helix family
           [Eubacterium rectale ATCC 33656]
 gi|238874845|gb|ACR74552.1| two component transcriptional regulator, winged helix family
           [Eubacterium rectale ATCC 33656]
 gi|238876753|gb|ACR76460.1| two component transcriptional regulator, winged helix family
           [Eubacterium rectale ATCC 33656]
 gi|291535286|emb|CBL08398.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 232

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 103/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   + DG +     +   +E   ++ E +++L    R D+  ++  L       
Sbjct: 4   ILLLEDDVSLIDGLVYSLKKNEFDVEVARTVCEAKQYLSELDRYDLLILDVTLPD--GTG 61

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            ++   +R  +Q +P+I ++      + +   DSG DD + KP    E+ +R+ A+ RR 
Sbjct: 62  FDVCERVRKENQQIPIIFLTASDEEVSIIRGLDSGGDDYITKPFKLGELCSRIRALLRRA 121

Query: 120 KVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            VS    N   E G I +   G    ++G+   L   E R+L  L+ N  + V +  I +
Sbjct: 122 GVSKSEKNTSMECGDITIDLLGSRATLKGKALDLTSAEYRLLCLLVRNANRVVTRDIILN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            ++      V++N +  ++ +LR+K+  N    + + + R  GY
Sbjct: 182 ELWDDTGNFVDDNTLSVYVRRLREKVETNPSHPEHLITIRGFGY 225


>gi|296130228|ref|YP_003637478.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296022043|gb|ADG75279.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 240

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +      G +G  +        +  +  +A  D+  ++  L       L+
Sbjct: 5   LLAEDDPAIAEPLARALGREGYDVRV--QGTGQGAIDGAASADLVVLDLGLPD--MDGLD 60

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R IR+     P++ ++        +   D+G DD V KP    E+LARV A+ RR   
Sbjct: 61  VARAIRSQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTVG 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +      +RV               L  +E  +L  L+A  G  V++  +   ++
Sbjct: 121 DPADEDELHAQNVRVDVAAHRAFQGERELHLTAKEFDLLRVLVAAAGTVVSRETLMREVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G  D       ++ H+S LR+KL  +      + + R +G+  +
Sbjct: 181 G-SDPTGSTKTLDMHVSWLRRKLGDDANAPRYISTVRGMGFRFE 223


>gi|323494579|ref|ZP_08099683.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
 gi|323311182|gb|EGA64342.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
          Length = 239

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRNANNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 TELPGAPSSEESIVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|153833922|ref|ZP_01986589.1| osmolarity response regulator [Vibrio harveyi HY01]
 gi|269959399|ref|ZP_06173782.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
 gi|148869760|gb|EDL68737.1| osmolarity response regulator [Vibrio harveyi HY01]
 gi|269835836|gb|EEZ89912.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
          Length = 239

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V             E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGDFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|331086930|ref|ZP_08336007.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410096|gb|EGG89531.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 226

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 111/221 (50%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  ++     + +E L+    E+   I   L   G   +
Sbjct: 3   LLIVEDEKQICDMVAKSLYAAGYEVD--TCYDGKEALECILSENYDLIVLDLNLPGMDGM 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R ++    ++ +S    +   ++  D+G +D + KP H +E+ AR+ ++ RR  
Sbjct: 61  ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V N+   + G I+  +  R+   + E  PL R+E  ILEYL+ N G+ V++ ++   ++ 
Sbjct: 121 VQNDICLKCGEIKFDTIKREAYAKEEAVPLTRKENGILEYLLINIGRPVSQEELIEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++     +  H+S LRKKL+ KLG+DP+ +K   GY I
Sbjct: 181 ATADSF-SGAIRVHMSSLRKKLKAKLGYDPIQNKVGEGYKI 220


>gi|329297168|ref|ZP_08254504.1| DNA-binding transcriptional regulator PhoP [Plautia stali symbiont]
          Length = 222

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        D G  ++     +  ++       D++ ++  L    E  + 
Sbjct: 4   LVVEDNALLRHHLAVQLRDMGHQVDAAEDAKEADYFLQEHIPDIALVDLGLPD--EDGMS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R  + + P++ ++     Q  ++  ++G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  LIRRWRGDAIRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++      P +V    R+  V      L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 HASQIISMPPFQVDLSRRELTVNDAPVKLTAFEYTIVETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK+      + +++ R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKILALHPTEVINTVRGQGYRFD 221


>gi|325280665|ref|YP_004253207.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
 gi|324312474|gb|ADY33027.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
          Length = 231

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +++  NS E    L +   E    I   ++ +G    
Sbjct: 10  ILVVDDEEDLCEILQFNLESEGFAVDIANSAEEALKLLTDEHE---LILLDVMMEGMSGF 66

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++   +R   H   P+I ++   +    L  F  G DD + KP   +E+ ARV A+ +R 
Sbjct: 67  KMAEKVRKEMHMNTPIIFLTAKDTENDMLTGFSIGGDDYIAKPFSIKEVAARVKAVLKRA 126

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                       E G + +  + +   +  +   L ++E  IL  +     +  ++  I 
Sbjct: 127 GNIALPEKKKTIEIGELTLDLNSKTVYLNEQQILLTKKEFEILSMMAKAPNRVFSREDIL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              +   D  V E  V+ HI++LRKKL        + ++   GY ++ 
Sbjct: 187 GKAW-QEDGYVLERTVDVHITRLRKKLGAFG--KHIANRSGYGYCLEC 231


>gi|323484985|ref|ZP_08090339.1| hypothetical protein HMPREF9474_02090 [Clostridium symbiosum
           WAL-14163]
 gi|323692815|ref|ZP_08107042.1| transcriptional regulatory protein CutR [Clostridium symbiosum
           WAL-14673]
 gi|323401727|gb|EGA94071.1| hypothetical protein HMPREF9474_02090 [Clostridium symbiosum
           WAL-14163]
 gi|323503129|gb|EGB18964.1| transcriptional regulatory protein CutR [Clostridium symbiosum
           WAL-14673]
          Length = 225

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 107/221 (48%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +  +        S++     E    L    R D+  ++  L   G+  +
Sbjct: 3   LLVIEDERALCETIVRSLRRQAYSVDCCYDGEKAVELLGVERYDLVLLDLNLP--GKDGM 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + R +R    +  ++ +S    ++  ++  D+G +D + KP H  E+ AR+ ++  R+ 
Sbjct: 61  TVLRTLRQTDRETKVLILSARGEVEDKVEGLDAGANDYLAKPFHLAELEARIRSLTLRQF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G +   +  R   V G+   L R+E  ILEYLM ++G+ V++ ++   ++ 
Sbjct: 121 TQQDVLLICGELTFDTRSRTAAVNGQTLTLTRKETGILEYLMVHQGRPVSQEELMDHVW- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             D +V+   N +  HIS LRKKLR  LG+DP+ ++   GY
Sbjct: 180 --DNSVDSFSNSIRVHISALRKKLRAALGYDPIRNRIGEGY 218


>gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 11/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKVL 61
           +L +D   + +        +G  ++     +  E L+ +    D+  ++  L       L
Sbjct: 5   LLAEDDPAISEPLARALRREGYDVDVRE--DGAEALEGAKDNPDLVLLDLGLPKV--DGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA  + +P++ ++       T+   D+G DD V KP    E+LARV A+ RR  
Sbjct: 61  EVCRRLRAEGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRT- 119

Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   TG + R+ SDGR    +GE   L  +E  +L  L+  +GK V + Q+   ++ 
Sbjct: 120 -PTDVGPTGELVRIDSDGRRAWFKGEELQLTAKEFDVLRVLIREQGKVVPREQLMREVWD 178

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
                     ++ HIS LR+KL  +      + + R +G+  +
Sbjct: 179 TA-WFGSTKTLDMHISVLRRKLGDDATSPQYIATVRGVGFRFE 220


>gi|169795326|ref|YP_001713119.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|213158688|ref|YP_002319986.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215482859|ref|YP_002325062.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|260554438|ref|ZP_05826659.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|301346782|ref|ZP_07227523.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB056]
 gi|301510388|ref|ZP_07235625.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB058]
 gi|301595944|ref|ZP_07240952.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB059]
 gi|332850436|ref|ZP_08432756.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013150]
 gi|332871886|ref|ZP_08440298.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013113]
 gi|169148253|emb|CAM86118.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|213057848|gb|ACJ42750.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213988252|gb|ACJ58551.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|260410980|gb|EEX04277.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|332730707|gb|EGJ62018.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013150]
 gi|332731100|gb|EGJ62401.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013113]
          Length = 220

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D     +   +    DG  ++     ++          D   ++  L    GEKV
Sbjct: 3   ILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGEKV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  R+  
Sbjct: 63  LTTIRH--KQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  A+Y 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E  I +LRKK+    G   + + R LGY +
Sbjct: 180 AWGEEIESNAIEVFIYQLRKKI----GSSSIKTIRGLGYRM 216


>gi|229541697|ref|ZP_04430757.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326117|gb|EEN91792.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 225

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +  D+   +E     E   +L      D+  ++  L        
Sbjct: 3   LLIVEDNVSLLESMKRMLEDE-FEVETARDGEEALYLAQQNIFDIILLDVMLPE--MDGF 59

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R    + P++ ++   SL+  +   + G DD + KP    E+ AR+ A  RR  
Sbjct: 60  SILKTLRKDRVETPVLFVTAKDSLEDRVTGLEIGGDDYIVKPFQAAELKARIRASLRRSG 119

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++      I +F   ++ +V G+   L   +  +LEYL+ N G  + + QIF  ++
Sbjct: 120 NMTIDHTLRYRGIELFGKEKEIKVDGQPLKLTITQYELLEYLIQNSGNILTREQIFDRVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G F+      +VE +I  LRKKL        + + R +GY +
Sbjct: 180 G-FESDTTIAIVEVYIHHLRKKLEPFGYHKDIQNVRGIGYLL 220


>gi|90425783|ref|YP_534153.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90107797|gb|ABD89834.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 221

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +           G +++     E   ++  S   D + ++  L   G   L
Sbjct: 3   ILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLP--GLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R  R A   +P++ ++   S +  +     G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        +R+    +     G    L   E R L YLM +  K V+KT++   IYG
Sbjct: 121 GHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D+  + NV+E  +++LRKK+    G D + ++R  GY +
Sbjct: 181 Q-DDDRDSNVIEVLVNRLRKKI----GADAIRTRRGQGYQL 216


>gi|332765503|gb|EGJ95721.1| qseB transcriptional activator [Shigella flexneri 2930-71]
          Length = 210

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 9/213 (4%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           L+ DG        G S++ F      +    SA  D   ++  L   G    ++ R  R 
Sbjct: 2   LIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMDSRDILREWRE 59

Query: 70  HSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAE 127
             Q  P++ ++   +L   ++    G DD + KP    E+ AR+ A+ RR    ++N   
Sbjct: 60  KGQREPVLNLTAREALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELR 119

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +    R   + GE   L  +E  +LE LM N G+ + +  I   +Y  +DE V  
Sbjct: 120 HGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY-TWDEEVTS 178

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N VE H+  LR+KL    G D + +   +GY++
Sbjct: 179 NAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 207


>gi|332662422|ref|YP_004445210.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331236|gb|AEE48337.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 229

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   V +       D+   +           +   A  D+  ++  L  K    L
Sbjct: 4   ILLVDDEVSVVNFIKKGLADENYEVSVAFDGSTGVKMALEAPFDLIILDIMLPDK--NGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR  + Q P++ ++   + +      D G DD + KP    E+ AR+ A+ RR K
Sbjct: 62  EVCKEIRFGNIQTPILFLTALGASENVALGLDMGADDYLVKPFKFIELNARIKALIRRGK 121

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +++  +         ++V  D +  E       L   E R+L  L+ N+G+ +++  + 
Sbjct: 122 SNDSHQQPHTIYTIADLKVDDDAKTVERNASFISLTATEYRLLLVLIKNKGRVLSRVDLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + + +  +E NVV+ +I+ LRKK+        + +   +GY +
Sbjct: 182 ESAWDI-NFNMETNVVDVYINYLRKKMDTDANNKLIHTVVGMGYVL 226


>gi|290352221|dbj|BAI78821.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+    +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEGEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|332969535|gb|EGK08554.1| transcriptional regulatory protein OmpR [Desmospora sp. 8437]
          Length = 245

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +       ++   +           +   +      ++  +  +     E
Sbjct: 24  LVVDDDQSIVELLRDFLENENFRVITACDSAQAWAVFEQSTIHCLILDIMMPEQ--NGFE 81

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           L R IRA S VP++ +S        +     G DD + K     EI+ARV A+ RR    
Sbjct: 82  LCRRIRAKSNVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSASQ 141

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            ++     + G I++    R+  V+ +   L  +E  +L     +     +  Q+ +  +
Sbjct: 142 QQMEERILDYGRIKINLSTREVLVEEKKVVLTPKEYELLRLFAEHPRHVFSYEQLLAKFW 201

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
              D   +++ +  H+S+LR+K+  +      + +   +GY  +
Sbjct: 202 ---DGVGDKHTIRVHLSRLREKIESDPNHPQYLVNVWGVGYRFE 242


>gi|329849000|ref|ZP_08264028.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328844063|gb|EGF93632.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 234

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A   D   ++   +G ++    + +           D+  ++  L       +
Sbjct: 6   ILLIEDEASNADIISSVLRKEGFAVTWAETGQKGLAAAGMTPYDLIVLDRMLPD--ISGM 63

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++   +R A  + P++ +S     +   +  + G DD + KP    E+ AR+ A+ RR  
Sbjct: 64  DIITRLRSAGVETPILMLSALSRSENRSEGLEGGADDYLGKPFEDHELTARIRALLRRSR 123

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V +     G I +    R    QG    L  +E  IL+ LM + G  V +  +   ++
Sbjct: 124 NQVHSAVMLYGDIELHVKSRTAHRQGVHLALSPKEFEILKLLMEHAGDIVTRDMLLKEVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            L +   + NV++ ++S+LR +L +      +++ R  G+ +
Sbjct: 184 HL-NFDPQTNVIDVNMSRLRHRLEDDFATPCLETVRGAGFRL 224


>gi|317500739|ref|ZP_07958956.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089783|ref|ZP_08338677.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897832|gb|EFV19886.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403666|gb|EGG83221.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 239

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 11/230 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +      L   +G  +    + +  E L    +  V  I   ++      
Sbjct: 10  VVMVVDDNKEIVYSISELLKYEGYRV--IPAYDGMEALNLLEQNPVDLILLDVMMPRLNG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L     +R   ++P+I +S        +     G DD V KP +  E++ARV A  RR +
Sbjct: 68  LSALMKLREKYRIPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYR 127

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    ++++   G + +    R   V+GE   L   E +ILE LM + G+  +  Q
Sbjct: 128 AWGGELPKENDDQIINGGLVLDKKQRIVLVEGEEVRLTATEYKILELLMEHPGQVFSSEQ 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++        EN V  HI  +R+K+  +      V     +GY ++
Sbjct: 188 IYENVWQESANYTVENTVMVHIRHIREKIEIDAKKPRYVKVVWGIGYKME 237


>gi|226315467|ref|YP_002775363.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098417|dbj|BAH46859.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 237

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +   +G     + +   +E L+  A+ +V  I   ++   +   
Sbjct: 6   ILIVDDEKSIIQLLETVLKKEGFR-HIYTAGTAQEALRLLAKNEVDIIILDVMLPDQSGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           +L   IR  S   +I ++   S    L  F  G DD V KP +  EI+AR  A  RR   
Sbjct: 65  DLCPQIREISSAYIIYLTARASDLDVLSGFAIGGDDYVTKPFNPLEIVARTKAGLRRGVL 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +  R + G   +     +  V GE  P P +  ++L YL  N     +K Q+
Sbjct: 125 MPVQHAEETRRRYDFGGFVLDEYEGELLVGGEAVPCPAQAYQLLLYLCKNPNMVFSKAQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + A++G+ D   ++N V  HI K+R+++ + LG    + + R LGY +
Sbjct: 185 YEAVWGI-DGMGDDNTVMVHIHKIRERIESDLGAPRYLVTVRGLGYKL 231


>gi|168177609|ref|ZP_02612273.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670465|gb|EDT82439.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 225

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    S       QS    D+  ++  L        
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPD--ISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++   S  + L+ +  G DD + KP   ++++A+V A+ +R+K 
Sbjct: 63  NVCERIRKESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N      + +    +  E   +   L   E +IL  L  N  K  ++ ++   I  
Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNKIFSREELMDYI-S 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +  + + ++++HI  +R KL         + + R +GY  + 
Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225


>gi|241662072|ref|YP_002980432.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309779746|ref|ZP_07674503.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|240864099|gb|ACS61760.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308921485|gb|EFP67125.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 235

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL---QSSAREDVSAIEAFLIGKGE 58
            ++ +D A + DG        G +++  +     +     Q++   D+  ++  L     
Sbjct: 3   ILIAEDDATLADGLTRSLRQAGYAVDQASDGATADAALSAQTAQTYDLLILDVGLPR--M 60

Query: 59  KVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             LE+ + +R+   + P++ ++   S++  +   D G DD + KP    E+ ARV A+ R
Sbjct: 61  SGLEVLKRLRSRGAMLPVLILTAADSVEERVKGLDLGADDYMAKPFALSELEARVRALVR 120

Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R           GP+     GR   +  +V  L  RE  +LE L+A  G+ V+K Q+   
Sbjct: 121 RGTGGGATLVRHGPLAFDQVGRIAYIHDQVVELSAREIGLLEILLARVGRLVSKEQLVDH 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + G + E V  N +E +I +LRKK+   +    + + R LGY ++
Sbjct: 181 LCG-WGEEVSNNAIEVYIHRLRKKIE--VEGIRIATVRGLGYCLE 222


>gi|149921141|ref|ZP_01909599.1| two-component response regulator [Plesiocystis pacifica SIR-1]
 gi|149818028|gb|EDM77487.1| two-component response regulator [Plesiocystis pacifica SIR-1]
          Length = 230

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVLE 62
           +++D   +  G    F  +G +++  +S+      L  S +     ++  L    E    
Sbjct: 2   VVEDDRNLATGLKLNFELEGYTVDLVHSIRDAGAHLIESGKYAALILDVMLPDNEEGGFV 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           L R +R      P++ ++    +   +   ++G DD + KP    E+LARV ++ RR   
Sbjct: 62  LCRKLRDAGDFTPVLMLTARDRISDRVRGLEAGADDYLVKPFELDELLARVRSLLRRRGW 121

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +    R   G + +    R     GE   L   E  +L Y + N  + +++ ++ 
Sbjct: 122 EQKSSEGPAERVHIGDVEIDFAARVTARGGEELKLTALEYDLLRYFIENPNRVLSRQELQ 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++ L D      +V++ I +LRK L  +        S R  GY  
Sbjct: 182 EKVWKL-DNYPNSRMVDNFILRLRKHLEPSPKEPRYFVSVRGAGYKF 227


>gi|168187464|ref|ZP_02622099.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
 gi|169294662|gb|EDS76795.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
          Length = 231

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +      +       +    +   E+ L+    E+   +   ++  G    +
Sbjct: 8   LVIEDEQSISKFIKLVLQKQNFEV--IQAFSGEDGLKKVTTENPVVVILDIMLPGIDGFK 65

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  I+R + S + +I ++        +   ++G DD + KP +  E+ AR+ ++ RR+  
Sbjct: 66  VCEILRKNYSSIGIIMLTALGQDVDKIKGLENGADDYMIKPFNPLELAARITSLIRRMNF 125

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           S+N +     +G  ++  + +      +   L  +E  +L+  M N G+ +++ ++    
Sbjct: 126 SSNTSSDILISGEFKIDLNSKIAYKNDKELNLTPKEFLLLKIFMENIGRSLSRDKLLDLA 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           +G ++   +  +V+ +I +LR KL +       + +   +GY
Sbjct: 186 WG-YNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGVGY 226


>gi|94314591|ref|YP_587800.1| DNA-binding response regulator [Cupriavidus metallidurans CH34]
 gi|93358443|gb|ABF12531.1| DNA-binding response regulator in two-component regulatory system
           with CopS [Cupriavidus metallidurans CH34]
          Length = 228

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  +S    + +  +   D+  ++  L        
Sbjct: 3   LLVVEDETKTGEYLRQGLTEAGFIVDLVHSGLDGQHMALNESYDLLILDVMLPD--IDGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + IRA    VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RILQNIRAAGNPVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +R +   + +    R     G    L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 AQAPVDRIQIADLVLDLARRRATRAGRRIVLTGKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDDFDDKLIQTVRGMGYVLE 222


>gi|311106506|ref|YP_003979359.1| response regulator 10 [Achromobacter xylosoxidans A8]
 gi|310761195|gb|ADP16644.1| response regulator 10 [Achromobacter xylosoxidans A8]
          Length = 233

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 7/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G ++    +   +  +++  R D +     L+  G   L+
Sbjct: 5   LLVEDDPKLSRLIAQFLEQHGFNV--AQAYRGDHAVEAFRRHDPAITILDLMLPGRDGLQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S  P++ ++        +   +SG DD V KP+  R +LAR+ A+ RR    
Sbjct: 63  VCRDLRAFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHSQL 122

Query: 123 N---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    R E GP+ +    R     G    L   E  +L  L +  G+ + +  + +A+ G
Sbjct: 123 DEPPERLEFGPLVIDRRTRAVVHAGSEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVRG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           + +    +  V+  +SKLR+KL +       + +    GY
Sbjct: 183 I-EFNGLDRSVDVCVSKLRRKLDDDPRDPARIKTVWGKGY 221


>gi|257867051|ref|ZP_05646704.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873386|ref|ZP_05653039.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877129|ref|ZP_05656782.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257801107|gb|EEV30037.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257807550|gb|EEV36372.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811295|gb|EEV40115.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 224

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D    +  + G   + ++  E   +   +   D+  ++  +        
Sbjct: 4   LLVIEDDKTLSDNMKEIVSEIGDVTQAYDGSEG-LYEAETGIYDLIILDLMMPE--MNGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R    Q P++ ++    L+  +  F  G DD + KP +  E+L R+ A+ +R  
Sbjct: 61  EVLSALRKKGLQTPVLILTAKDGLEDKVTGFQKGADDYLTKPFYREELLMRIKALLKRSL 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N  E   +       +   QG++ P+  +E  +L Y + NR   + K QIF  I+
Sbjct: 121 GLFNENTLEYNGLLCNLGTNEVSYQGQLLPIQGKEFELLLYFLQNRNIILTKEQIFDRIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      VVE ++S LRK LR       + + R +GY +
Sbjct: 181 G-FDSETTLTVVEVYMSNLRKHLRQTGIDKEIRTLRNVGYIM 221


>gi|317473596|ref|ZP_07932885.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316898886|gb|EFV20911.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 226

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G    G         +      D+  ++  L  K     
Sbjct: 4   ILIIEDDKEILKILSDFLSGYGFEAVGKTDGRCICQIIRHQNIDLVLLDLMLPYK--SGD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR+ S +P+I IS   + Q  +D    G DD + KP    E LAR+ +  RR K+
Sbjct: 62  QLLKEIRSCSDLPVIVISARGTTQNKIDLLRLGADDYITKPFDLDETLARIESNLRRSKL 121

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + + +      ++G    L  +E RILE LM    K  +K  +F +I+
Sbjct: 122 QTFPKKVLKFQELTLDTGSLTAYLKGVELSLTAKEFRILELLMRYPDKIFSKANLFQSIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G  +   E+N +  HIS LR KL+      + +D+   +GY +
Sbjct: 182 G-SEYLSEDNTLNVHISHLRNKLKAVSSENEYIDTVWGIGYRL 223


>gi|258625652|ref|ZP_05720531.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM603]
 gi|258581890|gb|EEW06760.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM603]
          Length = 228

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      +  + D+  ++  +       +
Sbjct: 4   ILLIDDDTELTSLLTEVLQYEGFEISEANDGEAGLAAVTD-QIDLILLDVMMP--KLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + +R     P++ ++        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 61  ETLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQN 120

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  E   I+V+   ++   QG++  L   E  +L + + + G+ + K  +   
Sbjct: 121 ALSPKHTDVIECQDIQVYPGKQEAYCQGQLLDLTTTEFALLTHFVQSPGETLTKEMLSIE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           + G    A +   ++ H+S LRKKL  +L G   + + R  GY
Sbjct: 181 VLGKRLAAFD-RAIDMHVSNLRKKLPERLDGKARIKTLRGRGY 222


>gi|228991332|ref|ZP_04151289.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228768395|gb|EEM17001.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 238

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G S+      +         + D++ I+  +        
Sbjct: 5   ILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPN--INGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL +I+R   ++P+I +S        +     G DD ++KP    E+LAR+ A  RR   
Sbjct: 63  ELIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYD 122

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L    ++     + +       + +G    L   E ++L+  M   G+   K QI
Sbjct: 123 FNTDSLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           F  ++       ++N +   IS+LR+K+ +       + + R LGY  
Sbjct: 183 FENVWSDH-YYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRF 229


>gi|156972943|ref|YP_001443850.1| osmolarity response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156524537|gb|ABU69623.1| hypothetical protein VIBHAR_00621 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V             E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGDFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133739760|emb|CAL62811.1| Putative transcriptional regulatory protein TctD [Herminiimonas
           arsenicoxydans]
          Length = 229

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++           G +++  ++ E      S+    +  ++  L       L
Sbjct: 3   ILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALP--KMDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   S+VP++ ++   +L   +   D G DD + KP    E  ARV A+ RR +
Sbjct: 61  AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G +R   +            L  RE  + E L++ +G+ V K Q+   ++G
Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+    N +E ++ ++RKKL        + + R +GY ++
Sbjct: 181 WGDDGG-SNAIEVYVHRMRKKLEPYNIT--IRTVRGMGYLLE 219


>gi|325122844|gb|ADY82367.1| two component transcriptional regulator, winged helix family
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 220

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D     +   +    DG  ++     ++          D   ++  L    GEKV
Sbjct: 3   ILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGEKV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  R+  
Sbjct: 63  LTTIRH--KQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S  +    G +++ +  +     G+   L  +E +IL  LM +    + + Q+  A+Y 
Sbjct: 121 LSQQSVLTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E  I +LRKK+    G   + + R LGY +
Sbjct: 180 AWGEEIESNAIEVFIYQLRKKI----GSSSIKTIRGLGYRM 216


>gi|291544863|emb|CBL17972.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 200

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 25/217 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +  I     +  ++    +L+  E  +S    D+  ++  L        
Sbjct: 4   ILLVEDDTAMAESLIFALEAEQFAVRHARTLDQAE--ESCQGVDLILLDVSLPDGC--GY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + IR     P++ ++        +   + G DD + KP   RE++AR+    RR K 
Sbjct: 60  DFCKRIRQKENCPVVFLTARDDEADIVHGLELGADDYITKPFRLRELIARIRVQIRRSKG 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +    +T                    L   ER++++YL  N G+ V + QI + ++   
Sbjct: 120 NTPLPDT--------------------LTATERKLVQYLQINSGRVVTREQILNCLWDQH 159

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            E V++N +  HI +LR+KL +  G   + + R +GY
Sbjct: 160 GEYVDDNTLSVHIRRLREKL-DADGVQHIRTVRGIGY 195


>gi|291519045|emb|CBK74266.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 223

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   ++         +G  + E  + ++  + ++ ++  DV  ++  +       
Sbjct: 4   ILVVDDEEKIRSIIRKYGEFEGYEVSEACDGMDAIQKVKENSDYDVIIMDVMMPE--LDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                 I+    +P+I +S        +  F++GVDD V KP   +E++ RV  +  R K
Sbjct: 62  FSACSEIKKIKDIPVIMLSARGEEYDRIHGFEAGVDDYVVKPFSPKELMMRVNVVTSRSK 121

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              VS +      + V    R   + G+   +  +E  +L YL+ N+   + + ++ + +
Sbjct: 122 PEAVSADIFRYEGLEVNFTARTVSIDGKRIEMSPKEYELLFYLVRNKNIALERERLITEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +G +D   ++  +++HI  LR  L +      + + R +GY  + 
Sbjct: 182 WG-YDYYGDDRTLDTHIKLLRNSLGDY--RKLLVTLRGVGYRFEV 223


>gi|326202207|ref|ZP_08192077.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988002|gb|EGD48828.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 91/235 (38%), Gaps = 19/235 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED--VSAIEAFLIGKGEK 59
            ++I+D   +++G   L   +   +     +E E  +    + D  +  +   ++  G  
Sbjct: 6   ILIIEDDYDIREGIRILLESENYEV-----IEAENGMTGLEKLDTLMDLVILDIMMPGMS 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L     IR  S +P++ ++        L    +G DD + KP  + E+L RV A+ RR 
Sbjct: 61  GLRTCEEIRKVSFLPVLFLTAKAQESDKLIGLMAGGDDYLTKPFTYAELLGRVKALVRRY 120

Query: 120 KVSNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +    +            E G I++     +  V G+   L   E  IL  +M N  K  
Sbjct: 121 REYQGKPSESNDKESPYIEIGGIKIHQQFNEVLVNGKEKELSDIEYNILLLMMQNSKKIF 180

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222
           +   ++ +++         + V  HI KLR K+  N      + +    GY  D 
Sbjct: 181 SAQNLYESVWKEPYFYSCNSTVMVHIRKLRVKIESNPQDPKYIKTIWGKGYKFDV 235


>gi|78221749|ref|YP_383496.1| two component heavy metal response transcriptional regulator
           [Geobacter metallireducens GS-15]
 gi|78193004|gb|ABB30771.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter metallireducens GS-15]
          Length = 223

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60
            ++I+D           F ++G S +   + E    L  +   D+  ++  L G+ G  V
Sbjct: 3   ILIIEDEKKAAAYLQKGFTENGFSADTAQNGEDGLHLARTEAYDLVILDIMLPGRDGWSV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           LE  R  R  S+VP+I +S   ++Q  +   + G DD + KP    E+LAR   I RR  
Sbjct: 63  LEELR--RGGSEVPVIYLSARDAVQDRVRGLELGADDYLVKPFAFSELLARARNILRRGP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R     + +   G      G    L  +E  +L  L+  +G+ +++  I   ++G
Sbjct: 121 ARQPERLRVDDLEMDLVGHKAWRGGTPLDLTTKEFLLLSLLLRRKGEVLSRALIADQVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + N+V+  I +LR+K+ +      + + R  GY +D
Sbjct: 181 I-NFDSDTNIVDVAIRRLRRKVDDPFERKLISTVRGAGYVLD 221


>gi|332524383|ref|ZP_08400598.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332107707|gb|EGJ08931.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 229

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +          DG ++E    L   +          + ++  L       L
Sbjct: 5   ILLLEDDNAIAGTVAFALERDGFAVEAVTLLRDADAALRRTLPAAAVLDVALPD--GNGL 62

Query: 62  ELPRIIRAHSQ-----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           +L R  RA        +PL+ ++        +   ++G DD + KP   RE++ARV A+ 
Sbjct: 63  DLLRRWRADGDARVATLPLLVLTARGEEIDRVLGLEAGADDYLPKPFSPRELVARVRALL 122

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           RR  +     +     +   G+    +G V  L R E  +L  L+  RG+ +++  +F  
Sbjct: 123 RRAAMPRATPQV--FELDEPGQRIRYRGAVLALTRLEYGLLRELILARGRILSREALFDR 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G   EA +   V++H+  LR KLR    G DP+ + R LGY++
Sbjct: 181 VWGTQAEAAD-RTVDTHVKTLRAKLREVHAGADPIATHRGLGYTL 224


>gi|320527553|ref|ZP_08028733.1| putative subtilin biosynthesis regulatory protein SpaR
           [Solobacterium moorei F0204]
 gi|320132110|gb|EFW24660.1| putative subtilin biosynthesis regulatory protein SpaR
           [Solobacterium moorei F0204]
          Length = 230

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 95/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +         + G  +   ++   +    S  + D+  ++  +        
Sbjct: 4   ILIIDDEKELVALLQDELTERGYQVLAAHNG-ADGVTLSKKQPDLIVLDIMMPE--MDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P++ +S   +    +     G DD ++KP   RE+LAR+ A  RR + 
Sbjct: 61  EVCRKIRDEVLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRREQR 120

Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S          R     + +       ++ GE  PL +RE  I+E L  + G+  ++  I
Sbjct: 121 SQYINAEKKRTRLYFNELSIDLLEHSVKIDGETIPLSKRECDIVELLALHAGQVFSREHI 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +  ++G +D   +   V  HI K+RKK        + + +   +GY   WN
Sbjct: 181 YERVWG-YDSDGDSYTVVEHIRKIRKKFALVSADTEYISTVWGIGYK--WN 228


>gi|254489830|ref|ZP_05103025.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224464915|gb|EEF81169.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 219

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   +  G       +G  +             ++A  D+  ++  L        +
Sbjct: 4   LLIEDDPSLAQGLKTSLKREGFIVNHLQLGRLAIESVATAAPDMVVLDLGLPD--MDGQD 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           + R IR  ++++P++ ++   SLQ  +D  D G DD + KP    E+LAR+    RRL  
Sbjct: 62  VLRAIRKINAELPVLILTARSSLQDKVDGLDGGADDYLAKPFDTDELLARLRVFERRLSS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + +     G + + +  +  +V G    L RRE  +L+ LM N G+   +  + + +Y  
Sbjct: 122 LKHAELVVGNVAMDTKAQQVKVNGADLELSRREYMLLKTLMENVGRVQTRDSLETKLYSW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE +  N +E HI  LRKKL  +     + + R +GY+I
Sbjct: 182 GDE-IASNAIEVHIHHLRKKLPEQF----IRTVRGVGYTI 216


>gi|222112512|ref|YP_002554776.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221731956|gb|ACM34776.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 224

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG +      G  ++   S  E +  L ++   D+  ++  L       
Sbjct: 3   ILIAEDDQVLADGLLRTLRGSGAVVDHVASGTEVDTALLTNNEFDLLILDLGLP--KMHG 60

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +R   S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 61  LEVLKRLRGRGSALPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +++    GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGGTSSAIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 -EWGEEVSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220


>gi|189218173|ref|YP_001938815.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylacidiphilum infernorum V4]
 gi|189185031|gb|ACD82216.1| Phosphate regulon transcriptional regulatory protein phoB
           [Methylacidiphilum infernorum V4]
          Length = 258

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 94/226 (41%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V           G   E   + E  E L+ + +E    I   L+      L
Sbjct: 34  ILVVEDEEDVLSLICLHLNSQGF--ETIGAKEGMEALRIARKELPDLIVLDLMIPEFSGL 91

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ + ++       +P++ ++        +   + G DD + KP   RE++ R+ +I RR
Sbjct: 92  DVCKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSILRR 151

Query: 119 L----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 ++    +   IR+    +    + +   L   E R+L  L+   G   ++ Q+ 
Sbjct: 152 RLEDNPLAEQIQQEDGIRLDPIDKVAYFKKKKIELTPIEFRLLSTLVEREGAVQSREQLL 211

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             ++G +D+ V+   +++HI +LR KL        + + R +GY  
Sbjct: 212 KEVWG-YDKTVDTRTIDTHIRRLRDKLGRA--SQYLRTVRGIGYRF 254


>gi|302559181|ref|ZP_07311523.1| two-component system response regulator TcsR4 [Streptomyces
           griseoflavus Tu4000]
 gi|302476799|gb|EFL39892.1| two-component system response regulator TcsR4 [Streptomyces
           griseoflavus Tu4000]
          Length = 260

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 10/219 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +         G ++EG  +        ++A  DV  ++  L       +E
Sbjct: 44  LVVEDDRGIAESLERGLRQAGYAVEGVRTGRAA---LAAATPDVVLLDLGLPD--IDGVE 98

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA S   +I ++        +   D G DD + KP    E+LAR+ A+ RR + +
Sbjct: 99  VCRRLRARSDAAIIAVTARGEEADRVVALDEGADDYLVKPFGLAELLARIRAVLRRRRPA 158

Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  GP+ +    R   V G V PL  +E  ILE L A+ G+ V++ QI    +   
Sbjct: 159 EPELVRHGPLTLDPRTRQVSVDGRVVPLTPKEFGILECLAADPGRVVSRQQILERAWDAH 218

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                  V++ H++ LR+KL        +++    G+ +
Sbjct: 219 WYGP-TKVLDVHVAALRRKLGVPG---LIETVYGHGFRL 253


>gi|269102741|ref|ZP_06155438.1| hypothetical DNA-binding response regulator [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162639|gb|EEZ41135.1| hypothetical DNA-binding response regulator [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 225

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    +D  +    + G  ++  +       + +S    +  ++  L       L
Sbjct: 3   ILVIEDDNTTRDFVVQGLIEHGYVVDEASDGHQGLMMATSCEYSLIILDRMLPM--LDGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IRA  +  P++ +S   S++  +    +G DD + KP    E++AR   + +R  
Sbjct: 61  KVLAAIRATENSTPVMILSAMDSVEERVVGLTAGSDDYLIKPFALAELIARAEILIKRHH 120

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +   A       +++            V  L ++E  +L+YLM +    V++  +F ++
Sbjct: 121 ATTQVATEYVYADLKLDLKSHRVWRGNRVINLQQKEFLLLQYLMGHAESVVSRMSLFESV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + N+++ HI+ LRKKL  +     + + R  GY +
Sbjct: 181 WN-YHFDPKTNIIDVHIANLRKKLDAEGEVSLIHTVRGAGYVL 222


>gi|226326821|ref|ZP_03802339.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198]
 gi|225204658|gb|EEG87012.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198]
          Length = 232

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G ++   +  E    L   A  D+  ++  +  K    +
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFNVVIASDGEQALKLLD-ASVDLLLLDIMMPRK--NGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R + Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  ETLKELRQNFQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S  +          +   +++    ++     E   L   E  +L  L  + G+ V++  
Sbjct: 121 SEQKQTDSTTSPTLQVDKLQLNPGRQEASFDNEPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL     G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPERTDGQPWFKTLRGRGY 226


>gi|91775660|ref|YP_545416.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91709647|gb|ABE49575.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 223

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A++ +G        G +++   +      +  +   D+  ++  L   G    
Sbjct: 3   ILVVEDDAILAEGTCESLSKAGYAVDLAETGTKANAMMEAGHYDMLLLDIGLP--GMDGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R H+  +P++ IS    +   +   D G DD + KP    E+ AR  A+ RR  
Sbjct: 61  EVLRRLRKHNNSIPVLIISARDDVDFRIYGLDLGADDFMLKPFVLAELHARTRALLRRHT 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S  N    G + V    +   V GE   L  RE  +L YL+ N GK V K  I   +  
Sbjct: 121 LSERNTLACGKLMVDLGAQRASVNGEPIELSIREWDVLVYLLRNLGKVVRKEAIIETLCD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   +  N VE +IS+LR KL        + + R  GY +D
Sbjct: 181 -WKTDISLNAVEVYISRLRSKLDAHGIH--IRTVRGFGYLLD 219


>gi|120596934|ref|YP_961508.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120557027|gb|ABM22954.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
          Length = 231

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 5/208 (2%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQV 73
                 D   S++  +  E   +       D + I+  L       + L R +R      
Sbjct: 16  LKQHLLDAHYSIDVASDGEEGLFQALECNYDAAIIDVGLP--KLDGISLIRSVRQKERDF 73

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132
           P++ ++   S Q  ++  D+G DD + KP H +E++AR+ A+ RR     +     GP  
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSAGKASPLVYNGPFS 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           + +   +     E+  L   E ++ E+LM + G+  +KT +   IY   D  ++ NV+E 
Sbjct: 134 LNTSSLEIRKGDELINLSGSEYKLFEFLMLHPGEVKSKTVLTEHIYDQ-DFDLDSNVIEV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I +LRKKL     ++ +++ R  GY +
Sbjct: 193 FIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|53803652|ref|YP_114696.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757413|gb|AAU91704.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 238

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + +        +G ++E  +  E       S R  ++ ++  L        
Sbjct: 4   LLLIDDDTALCELLSEYLALEGYAVEAVHDGEAGLAAALSGRYRLALLDVTLPR--LNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S +P++ ++        +   + G DD + KP +HRE++AR+ AI RR   
Sbjct: 62  EVLKRIRQESSLPVLMLTARGDDFDRVVGLEIGADDYLPKPFNHRELVARIKAILRRTDP 121

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +         E   + +    R+    G    L   E  +L+ L    G  V + ++  
Sbjct: 122 DSRPASGARILEIDDLSINPANREVRRGGVPVELTAAEFLLLKTLAEAPGTLVGRDELTR 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
            +        +   ++ H+S LR+KL  K    P + + R  GY
Sbjct: 182 IVLHRRLTPFD-RAIDMHVSNLRRKLGEKPDGSPRIRTVRGSGY 224


>gi|319936362|ref|ZP_08010778.1| hypothetical protein HMPREF9488_01611 [Coprobacillus sp. 29_1]
 gi|319808477|gb|EFW05029.1| hypothetical protein HMPREF9488_01611 [Coprobacillus sp. 29_1]
          Length = 226

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +     A    +G S    +S E         +  V  ++  L   G    
Sbjct: 4   ILLVEDNQELAKLIQAFLCKEGFSYYYASSAEDAFVWLKVHQPQVIVLDIMLP--GSDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              + +R  S VP+  +S   +    L  F+ G DD + KPI    + A++ AI  R   
Sbjct: 62  AFCQSVRQTSDVPIFMMSAKSAKSDKLMGFELGADDYMEKPIDPDILCAKIRAILTRHSK 121

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            K S+    +G IR+   G    ++ ++  L  +E  +L   + N GK + K  +F+ I+
Sbjct: 122 DKQSDQIINSGAIRIDVAGHKVYLKNKLLDLNVKEYALLMLFIENAGKTLHKDYLFNEIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           G+ D   E   +  HI  LR K+  +      + +   +GY  +
Sbjct: 182 GM-DSESENQTLTVHIKMLRSKIEKDSRNPQRIQTVWGIGYRYE 224


>gi|308180328|ref|YP_003924456.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308045819|gb|ADN98362.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 175

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 4/170 (2%)

Query: 54  IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
           +      LE+ R IR H  +P+I ++    +   +   D G DD + KP    E+LARV 
Sbjct: 1   MLPKMDGLEVLRRIRKHDTIPVIMMTARDYVSDKVAGLDGGADDYITKPFDTEELLARVR 60

Query: 114 AIYRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            I R      N     +   + + +  R  +    +  L +RE  +L  LM N      +
Sbjct: 61  VILRHADQQQNLQAVYKFADLELNTKSRQVKRNHHLVQLTQREYELLLTLMKNAPITFTR 120

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   ++G+ D   + N+V+ +I  LR K+        + + R +GY +
Sbjct: 121 DELLDQVWGV-DFEGQPNIVDVYIRYLRHKIDTDTQRKLIHTVRGVGYCL 169


>gi|317056279|ref|YP_004104746.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448548|gb|ADU22112.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 236

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 90/231 (38%), Gaps = 12/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      L   +G       + +  E L+  +  D+  I   ++      L
Sbjct: 8   ILVVDDDRDIVAAIAKLLELEGYK--TVRAYDGIEALEKLSENDIQLILIDVMMPRLDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +     G DD + KP +  E+ ARV +  RR   
Sbjct: 66  SAIMKIRDKRNIPIIVLSAKSEDTDKILGLSMGADDYITKPYNPMELTARVKSSLRRYMQ 125

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                     +  + G + +    +   V GE   L   E +ILE LM N G   +  +I
Sbjct: 126 LGDIGSINKTDVIKIGGLELDKGAKSITVDGEPVKLTATELKILELLMENAGHVFSAEEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +  ++     AVE N V  HI  +R+K+  +      +     +GY I+ N
Sbjct: 186 YRRVWNEDAYAVE-NTVMVHIRHIREKIEIDPKEPRYLKVVWGIGYKIEKN 235


>gi|298481877|ref|ZP_07000067.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|298272099|gb|EFI13670.1| DNA-binding response regulator [Bacteroides sp. D22]
          Length = 229

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 104/226 (46%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + +       ++G  ++  NS E E      +   +  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAE-EAMKMDISSYHLILLDVMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
             + +  +  ++VP+I I+   +   T+  F+ G DD ++KP   RE++ARV A+ RR  
Sbjct: 65  ANILKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTV 124

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +    R     + +    +   +  E  PL ++E  IL  L+ N+G+  ++  I +
Sbjct: 125 TTETERVPERLTYQSLVIDITKKKVSIDDEEVPLTKKEFEILLLLVQNKGRVFSREDILA 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 185 RIW-SDEVYVLDRTIDVNITRLRKKIGVYG--KRIVTRLGYGYCFE 227


>gi|288960530|ref|YP_003450870.1| two-component response regulator [Azospirillum sp. B510]
 gi|288912838|dbj|BAI74326.1| two-component response regulator [Azospirillum sp. B510]
          Length = 249

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G  +    + +  E  +  A+  V  I   L+  GE   
Sbjct: 7   LLIVDDDPEIRDMLHDFLVKSGFRVS--TAGDGREMARVLAQWPVDLIILDLMLPGEDGT 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S  P+I ++   S    +   + G DD + KP   RE+LAR+ AI RR   
Sbjct: 65  SLCRSLRAKSGTPVIMLTAMGSEVDRIVGLEVGADDYLVKPFSARELLARIRAILRRCGG 124

Query: 122 SNNRAE------TGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                E           +    R+       V  L + E  +L  L+    + V +T++ 
Sbjct: 125 PEPARERPRVLGFAGWSLDQGRRELRTPDRVVVHLSQGEYALLGTLLERAPQVVERTELL 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
               G       +  ++  IS+LR+KL     G   + + R +GY  
Sbjct: 185 EKHRGDT-SIPFDRSIDIQISRLRRKLEEGPGGSGLIKTVRGIGYQF 230


>gi|116329782|ref|YP_799501.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116332664|ref|YP_802381.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|294653520|ref|NP_714877.2| two-component response regulator [Leptospira interrogans serovar
           Lai str. 56601]
 gi|116122675|gb|ABJ80568.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116127531|gb|ABJ77623.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|293630770|gb|AAN51892.2| response regulator [Leptospira interrogans serovar Lai str. 56601]
          Length = 241

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 94/233 (40%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +           S     S E       +   D+  ++  L       +
Sbjct: 4   ILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPD--IDGI 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +    P+  ++        +   + G DD + KP   RE+  RV   +RR  
Sbjct: 62  EVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWD 121

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     ++     G +++    R   ++  +  + R+E  IL+ + A+ GK  ++ 
Sbjct: 122 KKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSRE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            I  A++G+ +    E +++SH+ ++R KL       + +++   +GY    N
Sbjct: 182 MILEAVWGM-EWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233


>gi|45655829|ref|YP_003638.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45602800|gb|AAS72275.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 243

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 94/233 (40%), Gaps = 14/233 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +           S     S E       +   D+  ++  L       +
Sbjct: 6   ILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPD--IDGI 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R +    P+  ++        +   + G DD + KP   RE+  RV   +RR  
Sbjct: 64  EVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWD 123

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                     ++     G +++    R   ++  +  + R+E  IL+ + A+ GK  ++ 
Sbjct: 124 KKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSRE 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
            I  A++G+ +    E +++SH+ ++R KL       + +++   +GY    N
Sbjct: 184 MILEAVWGM-EWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 235


>gi|49474886|ref|YP_032927.1| transcriptional regulator [Bartonella henselae str. Houston-1]
 gi|49237691|emb|CAF26878.1| Transcriptional regulator [Bartonella henselae str. Houston-1]
          Length = 240

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +  +       +
Sbjct: 11  IVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPR--MDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 69  ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRAST 128

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N    T          G + +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLTTGASPTSSLKRGDLVMDQERHTCTWKDKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAAY-SDQVYVDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRF 237


>gi|315178837|gb|ADT85751.1| osmolarity response regulator [Vibrio furnissii NCTC 11218]
          Length = 240

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQV 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSADDTVVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|227541888|ref|ZP_03971937.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182331|gb|EEI63303.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 226

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G   +     +  E + +  RE    I   L+  G   +
Sbjct: 5   ILVVDDDPAISEMLSIVLEAEGF--DTVVVTDGAEAVATFEREQPDLILLDLMLPGMNGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IR  S VP++ ++        +   +SG DD V KP   +E++ARV A  RR   
Sbjct: 63  DICKTIRRSSPVPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKELVARVRARLRRSSS 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N   +   + +           E   L   E  +L  L    G+   + ++   ++G 
Sbjct: 123 DDNEIMQISNLTIDVPSHTVRRGNEELQLTPLEFDLLVELGRKPGQVFTREELLEKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYSI 220
           +  A +  +V  H+ +LR K+        +  + R +GY +
Sbjct: 182 YKHASDTRLVNVHVQRLRSKIETDPENPTIVLTVRGVGYKV 222


>gi|149195385|ref|ZP_01872470.1| response regulator receiver domain protein (CheY-like)
           [Caminibacter mediatlanticus TB-2]
 gi|149134476|gb|EDM22967.1| response regulator receiver domain protein (CheY-like)
           [Caminibacter mediatlanticus TB-2]
          Length = 222

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +              ++     E   +L  + + DV  I+  L       ++
Sbjct: 4   LLVEDDKKLAKIIEKGLKRQNFRVDVAEDGEEGLYLARNNKYDVMIIDWMLP--KLSGID 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L + +R      P + ++    L   ++      DD + KP    E++AR+ A++RR K 
Sbjct: 62  LIKTLRKEDINTPTLILTAKSDLDDKVEGLSV-ADDYLTKPFEFEELIARLKALFRRNKK 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  N  + G + +  D ++ +  G+   L  ++  +L+ LM N+ K V    I   ++ +
Sbjct: 121 LPENIIKVGDLEMNLDTKEVKRAGKPIELTAKQFELLKLLMINKNKIVTPEMIEENLWEM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E  + NV+ +HIS LRKK+      + + + R +GY I
Sbjct: 181 -NEERDSNVITAHISYLRKKIDKGFDKELLKTIRGMGYKI 219


>gi|71282358|ref|YP_267401.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71148098|gb|AAZ28571.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 260

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 82/218 (37%), Gaps = 28/218 (12%)

Query: 31  SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLD 89
             +  E LQ +  +D   I   ++  G   L++ R +R    +  +I ++   S    + 
Sbjct: 32  CTQGNEALQQALTKDYQLILLDVMLPGISGLDICRQVRQEKPLQSIIMLTSKTSEIDRIL 91

Query: 90  FFDSGVDDVVNKPIHHREILARVAAIYRR-------------------------LKVSNN 124
             + G DD + KP   RE+ ARV +  RR                          ++   
Sbjct: 92  GLELGADDYMTKPFSVRELQARVRSQLRRVHAITAKNASEINSLVHEEKPVQESAQLDKT 151

Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184
               G + V         + +   L   E  ++++   +  +  ++ Q+   ++G +   
Sbjct: 152 STSIGQLLVDHRFHQVTYKNKAINLTVTEFELIDFFCQHPDQVFSRAQLLDGVWG-YHHN 210

Query: 185 VEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
             E+ V SHI++LR KL         + +   +GY ++
Sbjct: 211 GYEHTVNSHINRLRSKLEEDCTEPKIIQTVWGVGYKLN 248


>gi|238794386|ref|ZP_04637997.1| Transcriptional regulator in 2-component system [Yersinia
           intermedia ATCC 29909]
 gi|238726287|gb|EEQ17830.1| Transcriptional regulator in 2-component system [Yersinia
           intermedia ATCC 29909]
          Length = 232

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G ++      E    L  ++  D+  ++  +  K    +
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLLDNS-IDLLLLDIMMPRK--NGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R H Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  ETLKELRQHHQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S  +          +   +++    ++   +G+   L   E  +L  L  + G+ V++  
Sbjct: 121 SEQQQNVDQGAPTLDVDCLQLNPGRQEATFEGQSLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   K G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPDRKDGLPWFKTLRGRGY 226


>gi|301059412|ref|ZP_07200334.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300446493|gb|EFK10336.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 231

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 12/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  ++   + E    +  S + D+  ++  L   G    E
Sbjct: 7   LVVDDEEDILELVRFNLSREGYRVDCVGTGEEAIKIIKSKQPDLMVLDLMLP--GIDGFE 64

Query: 63  LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           + R ++     S +P++ ++        L   + G DD V KP   R + AR+ AI RR 
Sbjct: 65  VARFLKRDPETSNIPIVMLTAKTEEADVLTGLEMGADDYVTKPFSPRILTARIKAILRRD 124

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  ++  +   + V    R+  V  +   L   E  IL  L+   G    +TQ+  
Sbjct: 125 MLAFPEESSAVKIHNLVVHPGRREVLVDDKPVRLTFTEFGILNALVRRPGWVFTRTQLVD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + G  +  V +  V+  I  LR+KL        V++ R +GY I
Sbjct: 185 EVRG-SEHLVTDRSVDVQIVGLRRKLGPAGA--YVETVRGVGYRI 226


>gi|110834570|ref|YP_693429.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
 gi|110647681|emb|CAL17157.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
          Length = 222

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  + +  + G +++     +  + L +   +    +   L   G   L
Sbjct: 3   ILLVEDSIALADQLMPMLREHGYAVDWL--ADGRDALPALNDDPFDLVILDLGLPGLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++    R   Q VP++ ++   S    ++   SG DD + KP H  E+L RV A+ RR  
Sbjct: 61  QVLEQWRVEGQAVPVLILTARDSWAERIEGLQSGADDYLAKPFHPDELLLRVQALLRRTH 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + + ++   G   +  +        E   L   E R+L Y M N  + ++K Q+ S +Y
Sbjct: 121 GRANTSQLTAGTFTLDENRHSVWSGEEEIRLTGAEFRMLRYFMHNPDRLLSKGQLASHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   + NV+E H+++LR+KL    G   ++++R  GY  
Sbjct: 181 DN-ESDRDSNVLEVHVNRLRRKL----GKTVIETRRGQGYVF 217


>gi|300813449|ref|ZP_07093793.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512398|gb|EFK39554.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 233

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + +       ++G S+    + +  E ++    +    I   L+       
Sbjct: 6   ILVCEDDKNIANSIGLYLENEGFSV--IYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + +R  S VP+I +S        +   + G DD + KP +  E++ARV +  RR   
Sbjct: 64  EAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHS 123

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S+   + G +++ +  +   V  ++  L   E +ILE+LM N  K  +   I+  
Sbjct: 124 YDNLASSEIIQIGNVKLNTLEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEH 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           ++   + A+E   V  HI ++R+K+  +      +     LGY    N
Sbjct: 184 VWN--EPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDN 229


>gi|294498670|ref|YP_003562370.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348607|gb|ADE68936.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD A + D        +G +   F    E   +L    + D+  ++  +    E  
Sbjct: 4   ILLVDDEARMLDLLELYLLPNGFTCIKFEKGTEALRYLYEGNKADLMLLDIMMPS--EDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + +R  S +P+I ++        +   + G DD + KP    E++AR++A+ RR  
Sbjct: 62  WEICQKVRKMSDLPVIMLTARSQTLDVVKGLNIGADDYITKPFSEEELVARISAVLRRSL 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      +    +    + + +   +  +E  ++  L+ +  +  ++  +   ++G 
Sbjct: 122 KEKHEITHKGLVWSKEDHVLQYKNQHIQVTPKEFELVGLLLQHLNRVFSRDDLLVLVWG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           ++  + +  ++SH+  +R KLR       + + +   +GY 
Sbjct: 181 YEAEIGDRTIDSHVRNVRDKLRKAGFPVDEYLQTVWGIGYK 221


>gi|225374627|ref|ZP_03751848.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM
           16841]
 gi|225213520|gb|EEG95874.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM
           16841]
          Length = 227

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++       ++   +      +    L  + +  +  ++  +        
Sbjct: 5   ILIADDEPEIRNLLRLYLENENYHVIEAEDGQRALDLLRAEQPALCILDIMMP--KIDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + IR  S +P+I +S   +    +   + G DD + KP +  E +ARV +  RR   
Sbjct: 63  HVLQQIRKESNIPVIILSAKDADSEKILGLNLGADDYLAKPFNPLEAVARVNSNIRRFYS 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V         + +  D    +   ++  L   E RI+E LM + GK   K QI+ 
Sbjct: 123 LGTKVVQEGNLAVRDLVLNQDACTLKKGDKIIQLTSVEYRIMELLMKHPGKVFTKQQIYE 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +G  D  V +N +   ISKLR KL +      + + R LGY ++
Sbjct: 183 HGWGE-DYIVADNNIMVCISKLRAKLDDNPSA-YIQTIRGLGYRLE 226


>gi|167464653|ref|ZP_02329742.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384704|ref|ZP_08058372.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150403|gb|EFX43896.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 230

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 88/227 (38%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+ID      D       +    +    + E    L      D+  +E  L       L
Sbjct: 6   IVVIDSDPEAVDELKPHLLEHAYDVTVARTWEQAVHLIPKESPDLIILELALPDV--NGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S  P++ +S        ++  D G D+ + KP +  ++LAR+ A+ RR  +
Sbjct: 64  EICRFLRQSSSTPILFLSSQKDDSVIIEALDQGADEYITKPYNPGQLLARIRALLRRCSI 123

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N       + +       E QGE   L  +E  +L  L +N        ++F 
Sbjct: 124 RTSNSGENRVIRFPGLSIDLASHMVEAQGETVSLSAKEFALLSLLASNPNHVFRIEELFE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++ + D   +   +  H+S LRKK+  N      + + R +GY  +
Sbjct: 184 KVWSV-DSLGDPRTLIVHVSNLRKKIEPNPADPKYIITVRGVGYKFN 229


>gi|156744257|ref|YP_001434386.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235585|gb|ABU60368.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 239

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 97/226 (42%), Gaps = 9/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   + +        +G  +   ++             DV  ++  +       
Sbjct: 8   LILVVDDEPRMVNFMRMNLELEGCRVVSASNGREALEKVRDEMPDVVLLDIMMPV--MDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R +R  S VP++ ++     +  +   + G DD + KP  HRE+++R+ A+ RR  
Sbjct: 66  FETLRRLRQASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRHY 125

Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +T       +++    R+  V GE   L   E R+L +L+ N G  +   Q+ S
Sbjct: 126 TPPPAPQTLVKVDDRLQIDFARREVLVNGERVNLRPTEYRLLYHLVQNAGYVMTHEQLLS 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++G  +   E + +  +I+ LR+K+  +      + ++R +GY  
Sbjct: 186 KVWGP-EYRDETHYLRLYITYLRQKIEEDPANPKYILTERGIGYRF 230


>gi|120608754|ref|YP_968432.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120587218|gb|ABM30658.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 237

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------ 55
            ++++D A+++        D G  ++   +L   +        D   ++  L        
Sbjct: 3   ILVVEDDAVLRGVMQRSLADAGHRVDVAATLAEADHFWKVQPFDAVLLDLNLPQDAAHAS 62

Query: 56  KGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114
                L + R  RA     P++ ++     +  +   D+G DD + KP    E+ AR+ A
Sbjct: 63  PVGSGLAVLRAARARGDRTPVLVLTARDRTEERIAGLDAGADDYLGKPFDLAEVEARLRA 122

Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + RR + +++R   G + +    R   + G+ F LP RE  +L  LM   G+ V+K  + 
Sbjct: 123 LVRRTQGTDDRTSAGTLVLDRRVRRFTLHGQPFDLPAREFEVLWELMTPPGRVVSKRSLS 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +   FD+ + +N +E+ IS+LRKKL+       + + R LGY ++
Sbjct: 183 DKL-SDFDDMLGDNALEAFISRLRKKLQGSGAG--IRTLRGLGYMLE 226


>gi|81240494|gb|ABB61204.1| putative 2-component transcriptional regulator [Shigella
           dysenteriae Sd197]
          Length = 232

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 3/204 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 19  ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 77  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 137 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKL 205
           +   + N V+  I +LR K+ +  
Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPF 219


>gi|74317767|ref|YP_315507.1| two component heavy metal response transcriptional regulator
           [Thiobacillus denitrificans ATCC 25259]
 gi|74057262|gb|AAZ97702.1| Two component Heavy metal response Transcriptional regulator,
           Winged helix family [Thiobacillus denitrificans ATCC
           25259]
          Length = 242

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D             + G   +          L  S   D+  ++  L G  G +V
Sbjct: 15  ILIVEDEPKTGAYLRQGLTEAGFVTDLARDGWDGLELAKSGHYDLMILDVMLPGLDGWQV 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LE  R  RA    P++ ++    ++  +   + G DD + KP    E+LARV ++ RR +
Sbjct: 75  LEGVR--RAGIGTPVLFLTARDRVEDRVKGLELGADDYLVKPFAFAELLARVHSLMRRGQ 132

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  +   +   + +    R     G    L  +E  +LE  +  +G+ + ++ I S ++
Sbjct: 133 AALESAVLKAADLELDLLRRRATRAGRRIDLTAKEFALLELFLRRKGEVLPRSLIASQVW 192

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  + +LR K+        + + R +GY ++
Sbjct: 193 DM-NFDSDTNVIDVAVRRLRVKIDEGFDAKLIHTVRGMGYVLE 234


>gi|88860480|ref|ZP_01135118.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas tunicata D2]
 gi|88817678|gb|EAR27495.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas tunicata D2]
          Length = 228

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +++         +G ++    +         S + D+  ++  L   G+   
Sbjct: 4   ILLVEDDLVLQQLTKEYLIHNGFTVSVLGNGSEVLSSVQSLQPDLMILDVMLP--GKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ ++        +   + G DD V KP+  R ++AR+ AI RR K 
Sbjct: 62  SVCREVRDKHSLPILMLTAKGEDFDQVVGLEFGADDYVVKPVEPRVLVARINAILRRHKP 121

Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                E   G +++    R   +  E   L   E  +L  L +N G+ + +  +   + G
Sbjct: 122 HRQHEELVFGQLKIDKTSRLVFLNQEEITLTSHEFELLWLLASNAGEVLNRDYVHQQMIG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
             +    +  V+  IS+LRKKL +       + +    GY
Sbjct: 182 R-EYDGLDRTVDVRISRLRKKLLDNTDKPYRIKTVWGQGY 220


>gi|229826153|ref|ZP_04452222.1| hypothetical protein GCWU000182_01525 [Abiotrophia defectiva ATCC
           49176]
 gi|229789023|gb|EEP25137.1| hypothetical protein GCWU000182_01525 [Abiotrophia defectiva ATCC
           49176]
          Length = 229

 Score =  210 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 87/211 (41%), Gaps = 12/211 (5%)

Query: 21  DDGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77
            D + L  F        E+ L+ + +ED   I   ++  G+   E+ + IR   ++P++ 
Sbjct: 18  KDYLELSDFEVVIEGNGEKGLEKALKEDFDLILLDVMLPGKDGFEICKEIRKEKKIPILM 77

Query: 78  ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-------SNNRAETGP 130
           +S        +     G DD ++KP    E++ARV A   R +         N+      
Sbjct: 78  VSAKKDDIDKIRGLGLGADDYLSKPFSPSELVARVKAHLARYERLVNSSDEKNSFITVRG 137

Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
           IR+    R   V  E      +E  +L +L  N     +K ++F  ++G+ +   +   V
Sbjct: 138 IRIDRTARRIFVNDEEKSFTTKEFDLLTFLADNPNHVYSKEELFREVWGM-ESVGDIATV 196

Query: 191 ESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             HI K+R+K+         +++   +GY  
Sbjct: 197 TVHIKKIREKIEEDTTNPQYIETIWGVGYRF 227


>gi|228998532|ref|ZP_04158120.1| Response regulator [Bacillus mycoides Rock3-17]
 gi|229006008|ref|ZP_04163698.1| Response regulator [Bacillus mycoides Rock1-4]
 gi|228755276|gb|EEM04631.1| Response regulator [Bacillus mycoides Rock1-4]
 gi|228761257|gb|EEM10215.1| Response regulator [Bacillus mycoides Rock3-17]
          Length = 240

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            +++DD   + +    +   +G     +      E ++   R   D+  ++  L      
Sbjct: 13  ILIVDDEKEILNLLETVLKKEGFQ-HIYTYTTGAEGIRMCKRVQPDLIILDIMLPD--LD 69

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + + IR  + VP+  +S        +     G DD + KP   +E+  ++ A +RR 
Sbjct: 70  GYSVCQQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRN 129

Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +         + G IR+            +  L  +E  IL +L+ N  +  +K +++ A
Sbjct: 130 QYQEKARIMYQFGDIRIDEAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKARLYEA 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221
           ++G       +N++  H+  LR+K+ +       + + R LGY ++
Sbjct: 190 VWGET-YLGNDNIMMVHMRHLREKIEDNPSNPHYLVTVRGLGYKLN 234


>gi|218288804|ref|ZP_03493067.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258512312|ref|YP_003185746.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218241162|gb|EED08338.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257479038|gb|ACV59357.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 226

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++   + LF   G +++  +++        S   D   ++  L       +
Sbjct: 3   LLVVEDEATLRRELVQLFQQRGYTVDAVDTVFAAVEHGMSGAYDCIVLDYMLPD--GDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E    +R A    P++ ++     +  +   + G DD + KP H  E+LARV A+ RR  
Sbjct: 61  EALTQLREAGCTTPILMLTVKNDPKDRVLGLNKGADDYLGKPFHPDELLARVGALVRRSP 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   E G  ++ +  R  E  G    L  +E  ++E L  ++ + + + Q+ + ++
Sbjct: 121 ALTDDEVLEHGRAKLHTRSRSLEYDGRTLELTSKEFALMEALFRHKHQVMTRDQLIAKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D  V ++ ++++I  LR+K  N    + + + R  GY++
Sbjct: 181 GP-DAEVADSALDTYIYFLRRKCSNIGWKNAIVTVRGRGYAL 221


>gi|15807647|ref|NP_295328.1| response regulator [Deinococcus radiodurans R1]
          Length = 243

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 28/242 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           F++++D   ++   +A   + G +++   S      L  S   D   ++  L        
Sbjct: 3   FLVVEDELDIRRPLVANLREAGYAVDEAGSAAEARELAGSFPFDALMVDVGLPEGPLAGF 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +RA  +  P++ ++   S+   +   D+G DD + KP H  E+ AR+ A+ RR +
Sbjct: 63  DLVRDLRAAGKASPVLFLTARDSVTDRITGLDAGGDDYLVKPFHLGEVQARLRALVRRGR 122

Query: 121 VSNNRAETG----------------------PIRVFSDGRDPEVQGEVFPLPRRERRILE 158
                A +                        +R+    R     GE   L  +E  +LE
Sbjct: 123 AEAQSARSWRDCGWTGQAAPCSGAASGWRLARLRLDWTSRAVFRSGERVALTAKEFSLLE 182

Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            L ++ G+   + ++   ++       E NVV++++  LR+KL    G + V + R +GY
Sbjct: 183 VLASHPGRVYTRDELIDRVWDGR-FDAESNVVDTYVRNLRRKL----GDEVVQTMRGVGY 237

Query: 219 SI 220
           S 
Sbjct: 238 SF 239


>gi|54301942|ref|YP_131935.1| DNA-binding response regulator [Photobacterium profundum SS9]
 gi|46915362|emb|CAG22135.1| hypothetical DNA-binding response regulator [Photobacterium
           profundum SS9]
          Length = 225

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    ++       + G  ++          + +S    +  ++  L       +
Sbjct: 3   ILVIEDDLTTREFIAKGLREHGFVVDEAGDGHQGLMMATSCEYQLIILDRMLPI--LDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IRA  +Q P++ +S   S++  +    +G DD + KP    E++AR   + +R  
Sbjct: 61  KVLAAIRATENQTPILILSAMDSVEDRVTGLTAGSDDYLTKPFALAELIARAQILVKRHH 120

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S           +R+            +  L ++E  +L+YLM +    V++  +F ++
Sbjct: 121 SSTKVVTEYIYDDLRLDMKSHRVWRGERLLNLQQKEFLLLQYLMEHAENVVSRMSLFESV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HI+ LRKKL        + + R  GY +
Sbjct: 181 W-SYHFDPKTNVIDVHIANLRKKLEENGELGLIHTIRGAGYVL 222


>gi|182412142|ref|YP_001817208.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839356|gb|ACB73608.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 241

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +           G ++              +   D+  ++  L       L 
Sbjct: 19  LIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDT--DGLA 76

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
           + R +RA S++P+I ++    +   +   + G DD + KP   RE++AR+ A+ RR  + 
Sbjct: 77  VCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGTRD 136

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + V    R   +      L   E  +L YL  NRG+ +++ +I     G+ 
Sbjct: 137 DAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTRGI- 195

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           D    +  ++  +S+LR+KL +       + + R +GYS 
Sbjct: 196 DWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSF 235


>gi|167750125|ref|ZP_02422252.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702]
 gi|167656868|gb|EDS00998.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702]
 gi|291556575|emb|CBL33692.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 244

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEK 59
            ++ +D   ++D  +      G  + +  N+ +  + ++      DV+ ++  +   G  
Sbjct: 4   ILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMP--GMD 61

Query: 60  VLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             EL R +R  S    +I +S        +     G DD V KP    E++ARV A+YRR
Sbjct: 62  GSELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAVYRR 121

Query: 119 LKVS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + +S             +GP  + +  R     G    + + E ++LEY M N G  + +
Sbjct: 122 VSLSVARPPEDEGRTLISGPFSINTKSRIFTKNGTGIEITQVEYQLLEYFMENSGSALDR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
             I + I+G  D   ++ +V+ +I +LR K+  +      + +    GY 
Sbjct: 182 RSILTHIWGN-DYYGDDKIVDVNIRRLRMKIEEDPSNPRYITTIWGYGYK 230


>gi|293609579|ref|ZP_06691881.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828031|gb|EFF86394.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 220

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D     +   +    DG  ++     ++          D   ++  L    GEKV
Sbjct: 3   ILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGEKV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  R+  
Sbjct: 63  LTTIRH--KQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S  +    G +++ +  +     G+   L  +E +IL  LM +    + + Q+  A+Y 
Sbjct: 121 LSQQSVLTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E  I +LRKK+    G   + + R LGY +
Sbjct: 180 AWGEEIESNAIEVFIYQLRKKI----GSSSIKTIRGLGYRM 216


>gi|260222272|emb|CBA31670.1| Response regulator mprA [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 248

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 102/231 (44%), Gaps = 16/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++DG  A     G S+   +     + L  S R D   ++  L       +
Sbjct: 19  LLIVEDDELLRDGLCAQLVHAGHSVSSASDGAQAQGLLESTRFDGVVLDLGLPVV--DGI 76

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR   + +P++ ++    +   +   ++G DD + KP +  E+LAR+ A+ RR +
Sbjct: 77  AVLQWIRQRLAALPVLILTARDGVDDRVQGLNAGADDYLTKPFNMAELLARLQAMLRRSR 136

Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +             +  +R+        +  +   L  RE  +L  L+ N G+ V +  +
Sbjct: 137 LPAFGGSLEVQSTHSRNLRLDPVLPLAWLGDDPMELTHREWSLLSLLVNNMGQVVGREDV 196

Query: 174 FSAIYG---LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            S ++    L   A   N +E ++ +LR+KL +      + + R LGY ++
Sbjct: 197 LS-VWQTAPLEGGAAGSNALEVYVHRLRRKLTDSGLN--IRNVRGLGYMLE 244


>gi|257469073|ref|ZP_05633167.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185]
 gi|317063319|ref|ZP_07927804.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313688995|gb|EFS25830.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 221

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRA-LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   L+K     L  +  ++   + +L+ E  L+     +   I   +       
Sbjct: 5   ILIVEDEKNLIKVIEDTLLEESFLT---YKALDGETALEMFYEHNPDLILLDINLPKMNG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S +P+I ++   S    L     G DD + KP   + +  ++  + +   
Sbjct: 62  WEVCQNIRKESNIPIIMMTARDSEIDELKGLSIGADDYITKPFSLKVLNIKIKKMLKI-- 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N+  +   +       +  V  E   L RRE + LEYL+ N+G   ++  + + ++G 
Sbjct: 120 DENSSYKFNNLSFDFRSGELIVNSESIELTRREIQFLEYLIKNKGIIFSRDVLLNEVWG- 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           FD   ++ VV++ + +LRKKL +    D + + R +GY  D N
Sbjct: 179 FDFEGDDRVVDTLVKRLRKKLGDY--SDMIKTVRGMGYIFDEN 219


>gi|86609935|ref|YP_478697.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558477|gb|ABD03434.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 233

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + D        +G +++  +      E LQ +     + +    +      
Sbjct: 4   ILLVDDEVELADSLAQQLRREGYTVDVAYTGGRAWELLQKTGSLPYNLLVLDWMLPELSG 63

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L L + +R      P++ ++   +L   ++  D+G DD + KP   RE+LARV A+ RR 
Sbjct: 64  LSLCQRVRQVDCTTPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRT 123

Query: 120 KVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +     R + G + +  + +    QG +  L ++E R+LEY M + G+ +   QI+  
Sbjct: 124 TGTGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMTHPGQLLTHDQIYEQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++   D     NV+ + +  LR++LR     + + +    GY  
Sbjct: 184 VWAGED-PPSSNVLAAQVRLLRRRLRLPGAAELIHAVYGKGYRF 226


>gi|167773041|ref|ZP_02445094.1| hypothetical protein ANACOL_04430 [Anaerotruncus colihominis DSM
           17241]
 gi|167664974|gb|EDS09104.1| hypothetical protein ANACOL_04430 [Anaerotruncus colihominis DSM
           17241]
          Length = 235

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        + +++  + + +  + L   A   +  I   ++      ++
Sbjct: 8   LVVDDDREIVESIAIYLSRENLTI--YKAYDGLQALNIVAAHTIHLILMDIMMPKMDGIK 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               +R  + +P+I +S        +   + G DD + KP +  E++ARV +  RR    
Sbjct: 66  AMLKLRERNNIPIILVSAKGEDADKVFGLEFGADDYITKPFNPLELIARVKSQLRRYVML 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G + +    +  EV GE   L   E +I E LM + G+     +I
Sbjct: 126 GTARDRGGPAETIVCGGLTLDVRQKRLEVDGEEVKLTPIEYKITELLMRHPGRVFPIDEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++     A E N V  HI ++R+K+  N      +     +GY I+
Sbjct: 186 YERVWNEPSFAPE-NTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKIE 233


>gi|72383330|ref|YP_292685.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72003180|gb|AAZ58982.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 265

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 90/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++D         G  ++        + L      D+  ++  L       L
Sbjct: 5   ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     S +P++ I+    ++  +  F+SG DD + KP    E+  R+ A+ RR
Sbjct: 63  TLCQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRR 122

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +           + GP+ +  +  +         L   E  +L  LM   G+ VA +
Sbjct: 123 TNRAPLGSNNQQEILDYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLMQRHGQTVAPS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I   ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 183 LILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|312796926|ref|YP_004029848.1| Two-component response regulator kdpE [Burkholderia rhizoxinica HKI
           454]
 gi|312168701|emb|CBW75704.1| Two-component response regulator kdpE [Burkholderia rhizoxinica HKI
           454]
          Length = 232

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEK 59
            VLI+D   ++          G+++  F++    + L  +A  R D+  ++  L      
Sbjct: 8   IVLIEDEKQIRRFVGTSLQAQGMTV--FDADTGRQGLVEAATRRADLVIVDLGLPDT--D 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L++ R +R  + +P+I +S     +  +   D+G DD + KP    E+LAR+ A  RR 
Sbjct: 64  GLDVIRELRGWTDLPIIVLSARSQEEQKVAALDAGADDYLTKPFGVSELLARIRAQLRRR 123

Query: 120 KVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                    + + G I V    R     GEV  L   E R+L  L+ + G+ +   Q+  
Sbjct: 124 NRGGQDDMPQVQFGGIVVDLSARRVTRNGEVVHLTPIEYRLLVTLVRHAGRVLTHRQLLR 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++G        + +  ++  LR+KL R+    + + ++  +GY +
Sbjct: 184 DVWGPSHVE-SHHYLRIYMGHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|270263020|ref|ZP_06191290.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042708|gb|EFA15802.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 220

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G +L+ F      +    SA  D   ++  L   G   L
Sbjct: 3   ILLIEDDKLIGDGIKAGLTKLGFNLDWFTDGLVGKSALESAPYDAVILD--LSLPGLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  R A   VP++ ++   +L+  +    SG DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DLLRQWRQAGHDVPVLILTARDALEQRVSGLQSGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G +   S  R     GE   L  RE  +LE  + N+G+ +A++ I   +Y 
Sbjct: 121 GQLMPQLVHGNLVFDSATRSVNCNGEPVTLTPRELAVLELFLHNKGRVLARSLIQEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D+ V  N VE HI  LR+KL N      + +   +GY++
Sbjct: 181 -WDDEVSSNAVEVHIHHLRRKLGNAF----IRTIHGVGYTL 216


>gi|256823535|ref|YP_003147498.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256797074|gb|ACV27730.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 240

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        +    +    + E  +         +  ++  L   GE  L
Sbjct: 8   ILVVDDDVRLRSLLERYLKEQDFMVRTVENAEQMDRFLERENYHLMVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R+ +  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRSQNNPIPIIMLTAKGDEVDRIVGLEVGADDYLAKPFNPRELLARIRAVLRRQA 125

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    S      G   +    R+    G    L   E  +L+ L+ +  + +++ +
Sbjct: 126 KHIPGAPSNSETVVSFGRFTLNLATREMTDDGNPISLTSGEFAVLKSLVEHARQPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   +GY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEADPAHPRYIQTVWGVGYVF 233


>gi|225405400|ref|ZP_03760589.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
           DSM 15981]
 gi|225043102|gb|EEG53348.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
           DSM 15981]
          Length = 233

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +K+        +G       +        ++ + D+  ++  L       +
Sbjct: 6   ILIVEDDKAIKNLISTTLELEGYRYHTAENGAQAILSAATQQPDIMLLDLGLPD--MDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R  SQ+P+I IS     +  ++  D+G DD + KP    E+ AR+ A  RRL+ 
Sbjct: 64  QVIAKVRTWSQMPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELTARLRATLRRLQY 123

Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  AE        G + +        + G    L   E ++L  L  + GK +  + I 
Sbjct: 124 LSASAEMESAVFTNGGLTIDFAAGCASLDGNELHLTPFEYKLLCLLARHVGKVLTHSFIT 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++G   E  +   +   ++ LRKK+  +      + +   +GY +
Sbjct: 184 KEVWGSSWE-GDVASLRVFMASLRKKIEADAAHPQYIQTHVGVGYRM 229


>gi|209168557|gb|ACI42274.1| OmpR [Vibrio alginolyticus]
          Length = 239

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V             E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVMNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|331268264|ref|YP_004394756.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329124814|gb|AEB74759.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 216

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 101/219 (46%), Gaps = 7/219 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  +    +++ EE  +   +ED+  +   ++       
Sbjct: 3   ILVVEDDLAIGDLIEINLQMSGYEV--LKAIDGEEAKEVFDKEDIDLVLLDVMLPKIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + I+    +P+I ++   S+   +     G DD + KP  + E+LAR+  + RR   
Sbjct: 61  QLIKYIKKK-DIPVIFLTAKNSVIDKVKGLRLGADDYIVKPFENIELLARIEVVERRYNK 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +   +   I V  + R  ++ G+   L  +E ++L   + N+   +++ QI + ++G +
Sbjct: 120 DDKIIKFKNIEVDINKRIVKLNGDYVELTLKEFQLLLLFIKNKNIALSREQILNKVWG-Y 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D   E   V+ H+++LR+KL      + + +   +GY +
Sbjct: 179 DYVGETRTVDIHVNRLREKLD---LRNNIKTIFKVGYRL 214


>gi|325840156|ref|ZP_08166964.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325490395|gb|EGC92718.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 218

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 91/219 (41%), Gaps = 7/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +           G   E               + D+  ++  +   G    +
Sbjct: 6   LIVEDDLSIARLIKLNLNLAGYLTESVEDGLLAFERIQKEKFDLILLDVMIP--GMDGFK 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L   IR    +P+I ++   S    +D    G DD + KP    E+LAR+ A+ RR    
Sbjct: 64  LMEKIRPL-NIPVIFLTAKTSTMDKVDGLRLGADDYMVKPFEAIELLARIEAVLRRYGKV 122

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
           +       I V  + R+ E+ G V  L  +E  +   L+ N+   +++ Q+   ++G+ D
Sbjct: 123 HKLLTYKNITVNDEKREVELNGNVVYLTVKEYDLFLTLLKNKNIALSREQLIEKVWGI-D 181

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E   V+ HI+ LRKKL      + + +   +GY ++
Sbjct: 182 YYGETRTVDMHINALRKKL---GLQEEIKTVYKIGYRLE 217


>gi|291278719|ref|YP_003495554.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
 gi|290753421|dbj|BAI79798.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
          Length = 231

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   + +   +    +GV +  F + +           D+  ++  L        
Sbjct: 6   IFIIEDDKKIANIVSSYLKHEGVEVFHFINGKEALDAVIELNPDLIILDLMLPD--ISGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I+    +P+I ++   S +  L  F  G DD V KP   RE++ RV AI +R++ 
Sbjct: 64  ELCQDIKEMVDIPIIMLTAKSSEEEKLAGFALGADDYVTKPFSPRELIYRVKAILKRVRK 123

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S++       G + + S   +  + G+   L   E +IL  L     K  ++  I     
Sbjct: 124 SSSEKLSFNNGELILDSSKYEALLNGKNLNLTPTEFKILLVLAEKPEKVFSRYDIIEQAL 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSI 220
           G +     +  V++HI  +R K+ +KL  D   + +   +GY  
Sbjct: 184 G-YQFDGYDRNVDAHIKNIRAKM-SKLSEDAKYIVTVYGVGYKF 225


>gi|254251829|ref|ZP_04945147.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124894438|gb|EAY68318.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 246

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 103/223 (46%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           VLI+D   ++    A   +DG+++    + +      ++ + D+  ++  L       L+
Sbjct: 23  VLIEDEKQIRRFVRAALEEDGIAVFEAETGKQGLIDAATRKPDLVIVDLGLPDT--DGLD 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S+VP+I +S        +   D+G DD + KP    E+ AR+ A  RR  ++
Sbjct: 81  VIRELRGWSEVPVIVLSARTQEDEKVAALDAGADDYLTKPFGVSELRARMRAQLRRRNLA 140

Query: 123 ----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + + + G + V    R     GE+  L   E R+L  L+ + G+ +   Q+   ++
Sbjct: 141 GVNESPKVDFGAVTVDLALRQVWRNGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 200

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G        + +  +++ LR+KL R+    + + ++  +GY +
Sbjct: 201 GPSHVE-SHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 242


>gi|56479148|ref|YP_160737.1| osmolarity response regulator [Aromatoleum aromaticum EbN1]
 gi|56315191|emb|CAI09836.1| Transcriptional regulatory protein similar to OmpR [Aromatoleum
           aromaticum EbN1]
          Length = 248

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD A ++D       + G +++        +        D+  ++  L   GE  L 
Sbjct: 13  LLVDDDARLRDLLSRYLQEQGFTVKAVVDAPSMDRALHREHFDLMVLDLMLP--GEDGLT 70

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA  + +P+I ++        +   + G DD + KP + RE++AR+ A+ RR   
Sbjct: 71  ICRRLRADENAMPIIMLTAKGDDVDRIIGLEMGADDYLAKPFNPRELVARIHAVMRRQPP 130

Query: 122 S--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S        +     G +RV    R      +   L   E  +L+ L+ +  + +++ ++
Sbjct: 131 SLPGAPTSEDEIVSFGRVRVNLGVRSLTRDEDEIALTTGEFSLLKVLLQHPRQPLSRDKL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
                G  +  V +  ++  +S+LRK + +       + +    GY  
Sbjct: 191 MELARGR-EYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVF 237


>gi|49473740|ref|YP_031782.1| transcriptional regulator [Bartonella quintana str. Toulouse]
 gi|49239243|emb|CAF25563.1| Transcriptional regulator [Bartonella quintana str. Toulouse]
          Length = 240

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +  +       +
Sbjct: 11  IVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHPPHLAIFDIKMPR--MDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 69  ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRANA 128

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N    T          G + +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLATGASSTSSLKRGDLVMDQERHTCTWKDKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAAY-SDQVYVDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRF 237


>gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 226

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGEK 59
            +++DD   + +    +   +G   E F   +    L +  SA  D+  ++  L   G  
Sbjct: 5   ILVVDDDTALAEMIGIVLRTEGY--EPFFCQDGALALDAFKSAAPDLVLLDLMLP--GMD 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +E+   IR  S VP+I ++        +   +SG DD V KP + +E++ARV    R  
Sbjct: 61  GIEICARIREESGVPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKELVARVRTRLRPA 120

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G + +   G +         L   E  +L  L     +   +  +   ++
Sbjct: 121 SDAATGTLTVGDLELDVTGHEVRRGESKINLTPLEFELLLALAMKPEQVFTREMLLEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           G +    +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 181 G-YHYKADTRLVNVHVQRLRAKVEEDPDNPKIVMTVRGVGYR 221


>gi|302874054|ref|YP_003842687.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689692|ref|ZP_07632138.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576911|gb|ADL50923.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 230

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D + +  G      ++G  +   ++L        + + D+  ++  L        E
Sbjct: 5   LLVEDDSTLAFGIEYTLKNEGFDVILADNLAKARKAFETEKLDIVLLDVTLPD--GNGYE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R IR++S + +I ++        +   D G DD ++KP+  +E+++R+ A+ RR   +
Sbjct: 63  FCREIRSNSTMAIIFLTSCNDEANVVMGLDLGADDYISKPVRIKELISRINAVMRRNGKA 122

Query: 123 ---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               N  ++G I +       +  G+   L   E R+L  L+ +  + +++  I   ++ 
Sbjct: 123 VDYANIIKSGNIEINVLKGKVKKAGKEIILTAVEYRLLLTLIEHSEQILSRNTILEKLWD 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
           +  E +++N +  +I +LR+K+ +       + + R +GY   WN
Sbjct: 183 IDGEFIDDNTLSVYIRRLREKIEDDASAPVHILTVRGVGYK--WN 225


>gi|229553724|ref|ZP_04442449.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229312895|gb|EEN78868.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 237

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +  I  F  D    E   +     +L      D   ++  L        
Sbjct: 13  ILVIEDDPDLNES-IVDFVRDFSQPEAALTGADGLYLAEEGIFDAIVLDIMLPE--LNGF 69

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +RA   + P++ ++   +L   +  F+ G DD + KP H  E++ R+ A+ +R  
Sbjct: 70  DLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRTG 129

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    GP  V  +  +  +  +   L  +E  +L YL+ N+   + K QIF  ++
Sbjct: 130 HFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRLW 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD     +VVE ++S LRKKL+       + + R +GY  
Sbjct: 190 G-FDSDTAVSVVEVYMSNLRKKLKPMQADVWIKTIRNVGYIF 230


>gi|330502123|ref|YP_004378992.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328916409|gb|AEB57240.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 244

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++ +D A + D  IA     G+  +  +  +    +  S + D+  ++  +       
Sbjct: 17  LVLIAEDEAEIADILIAYLQRSGLRTQHASDGQQALAMHQSLKPDLLLLDVQMPV--LDG 74

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++   IR+    P+I ++        L     G DD V KP +  E++ARV A+ RR +
Sbjct: 75  WKVLSEIRSRGDTPVIMLTALDQDIDKLMGLRLGADDYVVKPFNPAEVVARVQAVLRRTR 134

Query: 121 VSN----NRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            S          G  ++  D  +  V    Q +   L   E ++L  LM    +  ++ +
Sbjct: 135 ASAPTATQVLRVGAFQIDLDSHEASVLRDGQTQTLDLTLTEFKLLACLMRAPKRAFSRAE 194

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +     D    E  V+SH+SKLRKKL          S   +GY  
Sbjct: 195 LLESCLPEGDTL--ERTVDSHVSKLRKKLEALDIQGVPASVWGVGYRF 240


>gi|330810224|ref|YP_004354686.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378332|gb|AEA69682.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D A+     +A    +G+ ++  ++         S   D+  ++  L       L
Sbjct: 4   ILTIEDDAVTAREIVAELTRNGLDVDWVDNGREGLERAVSGDYDLITLDRMLPE--LDGL 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +R      P++ IS    +   +    +G DD + KP    E+ ARV  + RR  
Sbjct: 62  VIVTTLRTMGVATPILMISALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRRNN 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +          + +    R+    G++  L   E ++LE+LM N G+ +++  IF  +
Sbjct: 122 GAREPETVLRVADLELNLISREASRNGQLLSLLPTEYKLLEFLMRNSGQILSRMMIFEEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +      N+++ HI +LRKK+        + + R  GY I
Sbjct: 182 WG-YHFDPGTNLIDVHIGRLRKKIDPPGLEPLIRTVRGSGYVI 223


>gi|238926849|ref|ZP_04658609.1| two component response regulator [Selenomonas flueggei ATCC 43531]
 gi|238885381|gb|EEQ49019.1| two component response regulator [Selenomonas flueggei ATCC 43531]
          Length = 225

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   +      +   + +S+E            +    D+  ++  +   GE  ++
Sbjct: 4   LLAEDDLRLGKLIQYMLEQNDISVEWVTDGSDIYAYATYTEYDILILDWMMP--GESGVD 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              R+ R      ++ ++   S++  +   D+G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  ACARLRRNGYDRAILMLTARDSVEDRVKGLDAGADDYLVKPFEFSELLARLRALGRRSTQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++ +   E G  ++       E  G++  L  RE ++ + L  N G  V +  I   I+G
Sbjct: 122 RIQHEVDEIGGFKLNRTANILEKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L +  V  N ++S++  LRKKL        + + R +GY ++
Sbjct: 182 L-EADVSSNNIDSYMKMLRKKLDAAGEEASIKTIRGVGYKLE 222


>gi|21244692|ref|NP_644274.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|294626751|ref|ZP_06705346.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|21110381|gb|AAM38810.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|292598999|gb|EFF43141.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 221

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +           +++        + +    R     ++  L   GE  L
Sbjct: 3   LLLVEDDTMLANAICDGVRQQSWTIDHVGHANAAKTVLVDHRYSAVLLDIGLP--GESGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R+H    P+I ++    L   +   D+G DD + KP    E++AR+ A+ RR +
Sbjct: 61  SVIRFMRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAVTRRSQ 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R     G+   L   E R+L  LM   G+ V K Q+   IYG
Sbjct: 121 GRVVPLLSHGDVCMDPSSRKVTKDGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E    N++  ++ +LR+KL + L    + +    GY +
Sbjct: 181 GPSEGG-SNMIAVYVHQLRRKLGDAL----ISTVYGQGYMV 216


>gi|254228565|ref|ZP_04921990.1| osmolarity response regulator [Vibrio sp. Ex25]
 gi|151938947|gb|EDN57780.1| osmolarity response regulator [Vibrio sp. Ex25]
          Length = 237

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V             E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|323497026|ref|ZP_08102049.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326]
 gi|323317870|gb|EGA70858.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326]
          Length = 239

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 100/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                    + +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 TELPGAPSSAESVVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEIDPSKPRYIQTVWGLGYVF 232


>gi|262165035|ref|ZP_06032772.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           mimicus VM223]
 gi|262024751|gb|EEY43419.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           mimicus VM223]
          Length = 162

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 72  QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETG 129
            +P++ ++     +  +   + G DD + KP   +E++AR+ A+ RR+  +   +  +  
Sbjct: 9   NIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVTPTALEDVIDVQ 68

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            +++           +   +   E ++L + M ++ +  ++ Q+ + ++G  +  VE+  
Sbjct: 69  GLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVWGT-NVYVEDRT 127

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           V+ HI +LRK L +      + + R  GY  
Sbjct: 128 VDVHIRRLRKALEDAGHDKLIQTVRGAGYRF 158


>gi|262166699|ref|ZP_06034436.1| transcriptional regulator CpxR [Vibrio mimicus VM223]
 gi|262170378|ref|ZP_06038056.1| transcriptional regulator CpxR [Vibrio mimicus MB-451]
 gi|261891454|gb|EEY37440.1| transcriptional regulator CpxR [Vibrio mimicus MB-451]
 gi|262026415|gb|EEY45083.1| transcriptional regulator CpxR [Vibrio mimicus VM223]
          Length = 228

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      +  + D+  ++  +       +
Sbjct: 4   ILLIDDDTELTSLLTEVLQYEGFEISEANDGEAGLAAVTD-QIDLILLDVMMP--KLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + +R     P++ ++        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 61  ETLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQN 120

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  E   I+V+   ++   QG++  L   E  +L + + + G+ + K  +   
Sbjct: 121 ALAPKHTDVIECQDIQVYPGKQEAYCQGQLLDLTTTEFALLTHFVQSPGETLTKEMLSIE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           + G    A +   ++ H+S LRKKL  +L G   + + R  GY
Sbjct: 181 VLGKRLAAFD-RAIDMHVSNLRKKLPERLDGKARIKTLRGRGY 222


>gi|326202141|ref|ZP_08192011.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987936|gb|EGD48762.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 233

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +    DG  +    +L  +E ++S    +   I   L+       
Sbjct: 8   ILVVDDEVKISEVIKSYLEHDGYKV--VTALNGKEAMESYKEFNPHLIILDLMLPDISGE 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + IR +S VP+I ++   S    +   D G DD V KP   R++LARVAA+ RR   
Sbjct: 66  EICKRIRKNSSVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPRQLLARVAAVLRRVVK 125

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      + G + + +   +    G    +   E RIL  +     K   + ++ +
Sbjct: 126 EPVADTGKIIFDNGDLVIDTFVHEIRKAGNTINVTPNEYRILVTMAGFPKKTFTRDELIN 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              G  D    +  V++HI  LR+K+ +       + +   +GY  
Sbjct: 186 MALG-DDFEGFDRTVDTHIKNLRQKIEDDPKTPRYLVTVHGIGYRF 230


>gi|170023656|ref|YP_001720161.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|169750190|gb|ACA67708.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
          Length = 235

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A +++G + +   +G       +      L    + D   ++  +        
Sbjct: 3   ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPE--LDGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R IR H  Q P+I +S        +   + G DD ++KP    E+ AR+  I RR L
Sbjct: 61  KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120

Query: 120 KVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +     AE      G + VF +            L  RE  IL YL  ++G+ + +  +F
Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVITRDMLF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            A++G +D   +   ++ HISKLRK +  + +    + +    GY 
Sbjct: 181 DAVWG-YDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYR 225


>gi|114563656|ref|YP_751169.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114334949|gb|ABI72331.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 224

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+           G  ++   + +   +  ++   D + I+  L  +    +
Sbjct: 3   ILVIEDDPLLSHHLQVQLSAQGNQVQVALTAKEGFYQATNYPIDAAIIDLGLPDQ--DGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L +++R A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ AI RR  
Sbjct: 61  SLIKMLRNADVKAPILILTARLTWQDKVEGLNAGADDYLVKPFQKEELIARLDAIVRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +G +++    +   +      +   E  ILEYLM +  + VAK ++   +Y 
Sbjct: 121 GFVRPTITSGALQIDVAAKQVTLNQTPLEITAFEYLILEYLMRHCHEVVAKQRLLDVVY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL        + + R  GY  +
Sbjct: 180 -ADKEGDPNTIEVMVSRLRKKLAQGGIEQSIITLRGQGYKFN 220


>gi|323698056|ref|ZP_08109968.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. ND132]
 gi|323457988|gb|EGB13853.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans ND132]
          Length = 232

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   ++D      G+         S         S    V  ++  +   G+  L
Sbjct: 7   ILIIDDDQKLRDLVAEYLGEYDFPTATLPSGMKAVETIRSLNPSVIVLDVMMP--GKDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P+I ++        +   + G DD + KP + RE+LAR+ A+ RR++ 
Sbjct: 65  EVLRDIRVEFATPVIMLTAKGEDTDRIVGLELGADDYMAKPFNPRELLARIKAVLRRVEA 124

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              R         G + +    +  E+ G    L   E R+L+ LM +  + +++ ++  
Sbjct: 125 CEERRAEITAIHAGGLVLNLARQVLEIDGGEVELAPTEFRLLKALMGHADRALSRDELMD 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220
             +   D A  +  ++ H+SKLR  L+        + +    GY  
Sbjct: 185 MAWDK-DFAAYDRSIDVHVSKLRSLLKPYPAHAKRIRTVWGTGYMF 229


>gi|320539825|ref|ZP_08039484.1| putative DNA-binding response regulator in two-component regulatory
           system with EnvZ [Serratia symbiotica str. Tucson]
 gi|320030011|gb|EFW12031.1| putative DNA-binding response regulator in two-component regulatory
           system with EnvZ [Serratia symbiotica str. Tucson]
          Length = 239

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYILKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + +   L   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIVFGRFKLNLGTREMFREDQPMSLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMIEEDPAHPRYIQTVWGLGYVF 232


>gi|126725701|ref|ZP_01741543.1| DNA-binding response regulator [Rhodobacterales bacterium HTCC2150]
 gi|126704905|gb|EBA03996.1| DNA-binding response regulator [Rhodobacterales bacterium HTCC2150]
          Length = 222

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           F+L++D A +       F  DG +++  +SL        +   D+  ++  L   G+   
Sbjct: 3   FLLVEDNAQLARAVCDRFAIDGHAIDHASSLADAIAFVDTTHYDLILLDIMLPD-GDGRD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
            L R  RA ++ P+I ++    +   +   D G DD V KP    E+ AR  A+ RR   
Sbjct: 62  FLSRHRRAKNKTPVIVLTARSQVSDRISLLDLGADDYVTKPFDFAELEARCRAVLRRQGG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V+ NR E   + + S       +     L  RE R++E   A  G+  +K  +   ++ L
Sbjct: 122 VAQNRIEFAGVVLDSLEATLSAKNGTQNLRNREFRLVEIFFAAPGQIFSKNHLMDRLFSL 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D+ V EN +E ++ +LRKKL        +++ R LGY +
Sbjct: 182 SDD-VSENAIEVYVGRLRKKLDGTGAQ--IETVRSLGYRL 218


>gi|91794885|ref|YP_564536.1| osmolarity response regulator [Shewanella denitrificans OS217]
 gi|91716887|gb|ABE56813.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 240

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLVEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R  +  +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQQNNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQA 125

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 PKVPGAPAQEEESVSFGEFSLNLATREMYRGEESIALTSGEFAVLKVLVNHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDATSPRYIQTVWGLGYVF 233


>gi|332882310|ref|ZP_08449938.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332679694|gb|EGJ52663.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 230

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +         + G  ++  +       +      D+  ++  +       L
Sbjct: 9   ILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQKGVFDLLVLDVIMP--KMDGL 66

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           E+ R  R       P I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 67  EVCRQFRLKEGYHTPAIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRG 126

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  + +     + +  D R       V  L  +E R+LEY M ++G  +++  +   ++
Sbjct: 127 RERPDRQLWCHDLVLDCDTRRARRGDTVIELTVKEYRLLEYFMTHQGVALSRLVLLKDVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +     NVV+ +++ LR K+        + +   +GY +
Sbjct: 187 DK-NFDTNTNVVDVYVNYLRNKIDRDFEVKLIRTIVGMGYIM 227


>gi|168182122|ref|ZP_02616786.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237793585|ref|YP_002861137.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182674487|gb|EDT86448.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261605|gb|ACQ52638.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 225

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 96/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    S       QS    D+  ++  L        
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPD--ISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++   S  + L+ +  G DD + KP   ++++A+V A+ +R+K 
Sbjct: 63  NVCERIRKESEVPIIMLTAKSSEDSILNGYSIGTDDYITKPFSPKQLVAKVNAVLKRVKG 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N      + +    +  E   +   L   E +IL  L  N  +  ++ ++ + I  
Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNRIFSREELMNYI-S 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +  + + ++++HI  +R KL         + + R +GY  + 
Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225


>gi|325845482|ref|ZP_08168773.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Turicibacter sp. HGF1]
 gi|325488501|gb|EGC90919.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Turicibacter sp. HGF1]
          Length = 233

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 15/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +         D+G  +   +   E  E ++ S    +  ++  +       
Sbjct: 4   ILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMP--KMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL R +R   + P+I +S       TL   + G DD + KP    E++ARV A  RR K
Sbjct: 62  LELCRRVRDQLKAPIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRREK 121

Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +       +++ +  +         L  RE ++ +Y + N G+ +++ Q
Sbjct: 122 RHQMNAIESLQDVLPFDRFKLYLNRYEVFKDEVNIDLSPREFQLFQYFVENSGRVLSREQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           IF AI+G  +   +   V  +I  LR+KL        + +   +GY +
Sbjct: 182 IFDAIWG--ENYGDIGTVAVNIKNLRQKLDPD--NQYIKTIWGVGYKL 225


>gi|317121610|ref|YP_004101613.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315591590|gb|ADU50886.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 224

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V          +G +++   S E    +      D+  ++  +   G   +
Sbjct: 4   ILVVDDDPSVTSLLKRGLAYEGFAVDTAASGEEALKIAREQPPDLVILDIMMP--GMDGM 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA   ++P++ ++   +    +   ++G DD V KP     ++ARV A+ RR +
Sbjct: 62  EVLRRLRAADPELPVLFLTARDAPADQVRGLEAGADDYVVKPFTFEVLVARVRALLRRRQ 121

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      + + +             L   E ++L   M +  + + K Q+   ++G
Sbjct: 122 AERPQVLRFADLVLDTGTYTARRGDREIHLTALEFKLLHEFMLHPRQVLNKDQLLERVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NV+E ++ +LR+KL  +     + + R +GY +
Sbjct: 182 -YDFGGNANVLEVYVKQLRQKLEAEGEPRLIHTVRGVGYVL 221


>gi|309809585|ref|ZP_07703442.1| subtilin biosynthesis regulatory protein SpaR [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308170066|gb|EFO72102.1| subtilin biosynthesis regulatory protein SpaR [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 219

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + + +DD   + +    +   +   ++ + N LE +      ++ D+  ++  +   G  
Sbjct: 3   LILAVDDDLDMLELIKNILKKNNHEVDVYQNPLEIDN--SKLSKYDLILLDIMMP--GID 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            +   + IRA    P++ ++     +  ++    G DD + KP    E+LAR+ A  RR 
Sbjct: 59  GISFCKDIRAKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGTAELLARIEAHLRRE 118

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K   +     G IR      +  V  E   L + E +I E L   +G+  ++ QI+  I+
Sbjct: 119 KRERHTSLNLGGIRFDLSSNEVFVGDEKVHLTKSEYQISELLAKRKGQVFSREQIYELIF 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G FD   + + +  HI  +R K   K   +P+++   +GY   WN
Sbjct: 179 G-FDGIGDASAISEHIKNIRAKF-QKYDENPIETVWGIGYK--WN 219


>gi|237794074|ref|YP_002861626.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229263707|gb|ACQ54740.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLP--GMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  KLLSNIRKSKPMPVIIISAKEEKDIKIEALRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N  +   I +  D R+  +  +   L  RE  IL+ LM    K   K+ +F +
Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +    +N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VW-SSEYLCNDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229


>gi|114798039|ref|YP_760125.1| DNA-binding response regulator ChvI [Hyphomonas neptunium ATCC
           15444]
 gi|114738213|gb|ABI76338.1| DNA-binding response regulator ChvI [Hyphomonas neptunium ATCC
           15444]
          Length = 258

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +       F  +G  +  ++  E      + +  D++ ++  +       +
Sbjct: 32  LALVDDDENIVASLKMFFEAEGYQVRAYHDGESALPALTDSPPDIAILDIKMP--KMDGM 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S++P+I ++        +  F+ G DD V KP  +R +  RV A+ RR + 
Sbjct: 90  ELLRRLRQTSELPVIFLTSKDEEIDEVIGFNIGADDFVRKPCSNRLLAERVKAVLRRSRG 149

Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           ++   E G ++        +  +       G+   L   E  IL+ L    G   ++ Q+
Sbjct: 150 ASAVPEEGDVKAIVRGKLVLDPNRHACTWDGKQVRLTVTEFLILQALATRPGYVKSRDQL 209

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219
             A Y      V++  ++SHI +LRKK R     FD +++   +GY 
Sbjct: 210 MDAAYD-DQIYVDDRTIDSHIKRLRKKFREVTDEFDAIETLYGVGYR 255


>gi|167647248|ref|YP_001684911.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167349678|gb|ABZ72413.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 239

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 13/228 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  +++D A ++D  + L   +G  + G    E  + L +  R D+  ++  +   GE  
Sbjct: 6   LIAVVEDDAEIRDLTLGLLRREGYEVVGCADAEAFDRLAARRRVDLVLLDIMMP--GEDG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L + R +RA  +V ++ ++        +   + G DD ++KP + RE+LARV AI RR +
Sbjct: 64  LSVCRRLRAAGEVAILMVTAKGDDIDRVIGLEIGADDYLSKPYNPRELLARVKAILRRTR 123

Query: 121 --------VSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKT 171
                              R+ +  RD     G    L   E  +L   + +  + +++ 
Sbjct: 124 EVHRAPSAPPGEVLGFAGWRLDTASRDLTDPDGRPVVLTGGEHDLLMAFLRHPQRVLSRD 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218
           Q+     G   E  +   V+  +S+LR+KL +   G   + + R  GY
Sbjct: 184 QLLDWTRGRSAEPFD-RAVDVLLSRLRRKLGDASGGAALIKTVRGGGY 230


>gi|158319177|ref|YP_001511684.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139376|gb|ABW17688.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 231

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +    G  +    +    E L      +   +   L+  G    
Sbjct: 7   ILIVEDDMDINNLLSKMLSKRGYHVR--QAYSGTEALMCLEHYEFQLVLLDLMLPGMVGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+   IR    +P+I IS   +  T ++  + G DD + KP    E+LARV A  RR   
Sbjct: 65  EIICQIRKLKNMPIIVISAKLAQDTKIEVLNLGADDFIVKPFDVNEVLARVEAQLRRYMV 124

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +   N      + +  D  +  ++G    +  +E  ILE LM +  K   K  +F 
Sbjct: 125 FSNPRDKQNILTYKDLVLNRDTVEVTMKGLPISVTAKEFAILELLMEHPKKVFTKANLFE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            ++   +   ++N V  HIS LR KL +     + + +   +G+ ++
Sbjct: 185 QVWN-DEFLGDDNTVNVHISNLRSKLAKADPATEYIHTVWGIGFKMN 230


>gi|251797216|ref|YP_003011947.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544842|gb|ACT01861.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 221

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +       + G  ++   +         +    +  ++  L   G    
Sbjct: 5   ILLVEDDEHIGNTVKTFLIEAGYKVDVCINGIEAYTNFYNHTYQLVILDIMLP--GMSGH 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R  R  +  P++ ++     +  +  FD+  DD V KP   + +L RV A+ RR   
Sbjct: 63  ELLREFRKRNNTPILMMTALSDDENQIKAFDAEADDYVTKPFKIQLLLKRVGALLRRSGA 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + +  D       G   PL  +E  IL  L+ N+G+ ++   I S ++G +
Sbjct: 123 LAKEIRCSNLTILPDDFRALYDGVELPLTLKEFEILMLLVQNKGRTLSHEIILSRVWG-Y 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   + + V +HI  LR KL      + + + R +GY ++ +
Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPE----NMIKTARGVGYRLEED 219


>gi|153940841|ref|YP_001389634.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936737|gb|ABS42235.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295317726|gb|ADF98103.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 225

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    S       QS    D+  ++  L        
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPD--ISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++   S  + L+ +  G DD + KP   ++++A+V A+ +R+K 
Sbjct: 63  NVCERIRKESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N      + +    +  E   +   L   E +IL  L  N  K  ++ ++   I  
Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELMDYI-S 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +  + + ++++HI  +R KL         + + R +GY  + 
Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225


>gi|78063373|ref|YP_373281.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77971258|gb|ABB12637.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 221

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +           G +++          L    R D+  ++A L   G    
Sbjct: 3   ILVVEDDAEIGAAIRNRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLP--GMDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR  
Sbjct: 61  TVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N+    G + +    R  E+ G+   L R+E  +LE L +   +  +K ++ + ++ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +E    N VE +++++RKKL+       + + R +GY I
Sbjct: 181 FGNEPT-ANAVEQYVTRVRKKLQ--GSSVEIRTARGMGYQI 218


>gi|117928972|ref|YP_873523.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649435|gb|ABK53537.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 225

 Score =  210 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G         +         + DV  ++  L   G   ++
Sbjct: 6   LVVDDDTALAEMLGIVLRGEGFEPHFVFDGDKALAAFREVKPDVVLLDLMLP--GTDGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121
           + R IRA S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR  + 
Sbjct: 64  VCRQIRAESGVPIVMLTAKSDTVDVVVGLESGADDYVVKPFKPKELVARLRARLRRTDEP 123

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +      G + +   G      G+  PL   E  +L  L        ++  +   ++G +
Sbjct: 124 APEILTIGDVTIDVAGHSVTRDGQPIPLTPLEFDLLVALARKPRHVFSREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
             A +  +V  H+ +LR K+        +  + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPDHPEIVLTVRGVGYK 221


>gi|332186443|ref|ZP_08388187.1| response regulator [Sphingomonas sp. S17]
 gi|332013426|gb|EGI55487.1| response regulator [Sphingomonas sp. S17]
          Length = 226

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D      G        G  +E               + D   ++  +       L
Sbjct: 5   LILVEDDRDYAAGLADDLTRLGHRVEHVGDGRQALAALDREQFDAVILDRMMPR--LDGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R     VP+I ++        +D  ++G DD V KP+   E+ AR+ A+ R  +
Sbjct: 63  SVVETLRERGLTVPVIMLTALSMASDKVDGLEAGADDYVVKPVAAEELNARINAVLRGRR 122

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++    G I V          G+   L   E ++L  L  + G+ + +  +   +
Sbjct: 123 WTVGESDTIRAGDIVVSPTSFRAWRAGQPIALANLELKLLTELARHAGEVLTRAMLIERV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++   E NVV+ +I +LR KL    G DP+++ R +GYS+
Sbjct: 183 WG-YEFEPETNVVDVYIRRLRVKLTEAGGSDPIETVRGIGYSL 224


>gi|327482088|gb|AEA85398.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G +++  +       L      D+  ++  L        
Sbjct: 3   ILVVEDEIKAAEYLQQGLIECGYTVDCVSDGLDGFHLALQNDYDIVLLDVNLPT--MDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+  +IR   Q  +I ++    L+  +   +SG DD + KP    E+LAR+  + RR + 
Sbjct: 61  EVLELIRRRKQTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLLRRGEA 120

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +      + +          G+   L  +E  +L  LM   G+ + +T+I + ++ 
Sbjct: 121 VALPSNLRVADLELDPGRHRAYRSGQRIDLTSKEFALLHLLMRRTGEVLTRTEITALVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVV+  I +LR K+    G   + + R +GY ++
Sbjct: 181 I-NFDCDTNVVDVAIRRLRMKVDEPFGDRLIHTIRGVGYVLE 221


>gi|291531882|emb|CBK97467.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           70/3]
          Length = 244

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEK 59
            ++ +D   ++D  +      G  + +  N+ +  + ++      DV+ ++  +   G  
Sbjct: 4   ILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMP--GMD 61

Query: 60  VLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             EL R +R  S    +I +S        +     G DD V KP    E++ARV A+YRR
Sbjct: 62  GSELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAVYRR 121

Query: 119 LKVS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + +S             +GP  + +  R     G    + + E ++LEY M N G  + +
Sbjct: 122 VSLSIARPPEDEGRTLISGPFSINTKSRIFTKNGTGIEITQVEYQLLEYFMENSGSALDR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
             I + I+G  D   ++ +V+ +I +LR K+  +      + +    GY 
Sbjct: 182 RSILTHIWGN-DYYGDDKIVDVNIRRLRMKIEEDPSNPRYITTIWGYGYK 230


>gi|121596283|ref|YP_988179.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120608363|gb|ABM44103.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 224

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG +      G  ++   S  E +  L ++   D+  ++  L       
Sbjct: 3   ILIAEDDQVLADGLLRTLRGSGAVVDHVASGTEVDTALLTNNEFDLLILDLGLP--KMHG 60

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +R   S +P++ ++   S+   +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 61  LEVLKRLRGRGSALPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +++    GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGGTSSAIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 -EWGEEVSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220


>gi|156743599|ref|YP_001433728.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156234927|gb|ABU59710.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 226

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++ DD          L  D G  +    + +    L +  +   D+  ++  +      
Sbjct: 3   ILVADDDLASVKLTSFLLEDAGYRV--IKAYDAAGVLHAIEQRTPDLVLLDVGMPKV--S 58

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             ++ R IR  S VP+I ++    LQ  +     G DD + KP    E+LARV A+ RR 
Sbjct: 59  GFDICRQIRRMSDVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRR 118

Query: 120 KV----SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                    R   GP+ +           G    L   E R+L YLM N G+ ++  QI 
Sbjct: 119 NSDMVNPVTRISQGPLTLDPIEHTVLFEDGRHVVLTPIEFRLLYYLMQNSGRVLSPDQIL 178

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           + ++G +D   E N+V  ++ +LR K+ +       + + R LGY  
Sbjct: 179 NKVWG-YDYEGESNLVAVYVRRLRAKIESDGESPRHIITVRNLGYKF 224


>gi|113955105|ref|YP_729887.1| two-component response regulator [Synechococcus sp. CC9311]
 gi|113882456|gb|ABI47414.1| two-component response regulator [Synechococcus sp. CC9311]
          Length = 295

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +       F  D V+     +      L    R D+  ++  L       LE
Sbjct: 68  LLVDDDPELLSFLYEEFTSDKVTCTCSKTGSKALTLLRQQRFDLVVLDWNLPDF--DGLE 125

Query: 63  LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           + + +R+     P++ ++ +  L   +   D G DD ++KP   RE+ ARV A  RR   
Sbjct: 126 ICQRLRSSGNTTPVLMLTAHDDLDARVQALDYGADDYISKPFELRELHARVRARLRRGTF 185

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +    + E G +R+    R          L +RE  +L YL+ + G+ + +  I   
Sbjct: 186 AAAEKQKEQLELGDLRINLLKRAVHRGEHKLSLTQREFDLLCYLIGHHGEVLHRKNILEG 245

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++G      + N ++ ++  LR+K+        + + R +G+ 
Sbjct: 246 VWGAP-FVGDPNTLDVYMGYLRRKVEKPDHPQLLHTIRGIGFM 287


>gi|308070222|ref|YP_003871827.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305859501|gb|ADM71289.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 266

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +          +   +  F+S +       + R D   ++  +   G   L
Sbjct: 34  IVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTNRPDCLVLDIMMP--GIDGL 91

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R  +++P+I IS        +   + G  D + KP + RE++ RV A+ R  K 
Sbjct: 92  SLLTQLREFTEMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLRLSKA 151

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       S +    G + +F+D R   V G+   L  RE  +L +L  +  +   
Sbjct: 152 GMSASDDRQAAESADICHAGNLCIFADFRKVTVDGQELNLTSREFDLLLFLANHLERPFG 211

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  +   ++  +D   +  VV+  + ++RKKL        +++    GY 
Sbjct: 212 REHLIQQVW-SYDFIGDVRVVDDLVKRIRKKLAEYHSTLVINTVWGFGYK 260


>gi|119776666|ref|YP_929406.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119769166|gb|ABM01737.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 225

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     +  +  F + G ++E          L +S + D+  ++  L G     L
Sbjct: 3   ILLVEDDNTTSEYIVKGFSEQGHNIEAAADGHQGLLLATSNQYDLIILDRMLPGLDGLAL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                    +Q P++ +S   ++   +    SG DD + KP    E+L R   +  R + 
Sbjct: 63  LAALRA-NANQTPVLILSALSNVDERVKGLRSGGDDYMTKPFAFSELLVRAEILVSRGQT 121

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      + GP+ +    R+  + G    L  +E ++L+YLM +  + +++T +F A++ 
Sbjct: 122 APVQTHLQAGPLEMELLTRNVTLDGHELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      NV++ HI+KLR+K       + +++ R  GY +
Sbjct: 182 -YHFDPRTNVIDVHIAKLRRKFEELGYGELIETVRGAGYRL 221


>gi|301645844|ref|ZP_07245759.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
 gi|301075922|gb|EFK90728.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
          Length = 239

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+    +      + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMGEEDPAHPRYIQTVWGLGYVF 232


>gi|238020067|ref|ZP_04600493.1| hypothetical protein VEIDISOL_01947 [Veillonella dispar ATCC 17748]
 gi|237863591|gb|EEP64881.1| hypothetical protein VEIDISOL_01947 [Veillonella dispar ATCC 17748]
          Length = 229

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G  +    +         +   D+  ++  L        
Sbjct: 5   ILIIEDDLDIANIERDYLMVAGYDVTIMTNGTEGIEAALNTPVDLIILDVMLPE--MDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117
           E+ R IR   +VP++ ++        +     G DD + KP     ++A++ A+      
Sbjct: 63  EVCRQIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYKR 122

Query: 118 ---RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              R  +  N  ++G IR+        V  +   L ++E ++LE+LM NR    +K +++
Sbjct: 123 LTERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           S ++GL D   +   V  HI++LR+++ +       + +   +GY  
Sbjct: 183 SRVWGL-DSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGYKF 228


>gi|163748837|ref|ZP_02156089.1| osmolarity response regulator [Shewanella benthica KT99]
 gi|161331611|gb|EDQ02416.1| osmolarity response regulator [Shewanella benthica KT99]
          Length = 241

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R     +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQS 125

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 KDVPGAPTQQEEEVTFGEFTLNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +         + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPATPRYIQTVWGLGYVF 233


>gi|329849811|ref|ZP_08264657.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
 gi|328841722|gb|EGF91292.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
          Length = 223

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D             + G+        +       +   DV  ++  +       + 
Sbjct: 4   LIVEDDNEAATNMQRGLKEAGIEARLAGDGQQGLDAVKAEMPDVIILDRMMPV--MDGVT 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +R   + VP++ +S    L+  +    +G DD + KP    E++ARV A+ RR   
Sbjct: 62  MLQQLRSEGTDVPVLFLSALGELEDRVSGLRAGADDYLVKPYALTELVARVEALARRKDK 121

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + +    R  + Q +   L  RE ++LE+LM + G+ V +T +   ++ 
Sbjct: 122 DAVDTVLRVGDLEMNLISRVVKRQNKTIDLQPREFQLLEFLMRHVGQSVTRTMLLEKVW- 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR KL        + + R  GY +
Sbjct: 181 AYHFDPQTNVIDVHISRLRSKLDKDFDRPMLHTVRGEGYQL 221


>gi|182417343|ref|ZP_02948678.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237668463|ref|ZP_04528447.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378773|gb|EDT76295.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237656811|gb|EEP54367.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 231

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  + DD   ++        + G  +E FN+ E           D+  ++  +   G   
Sbjct: 4   LIYIADDEDNIRYLVKTFLENTGYEVEDFNNGELLLEKFQIKPCDMVILDVMMP--GSDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S VP+I ++   +    +     G DD   KP     ++ RV AI+RR++
Sbjct: 62  FEICKKIREESIVPIIMLTARDTDIDYITGITLGSDDYFTKPFSPMSLVMRVKAIFRRIE 121

Query: 121 VSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
             +N            + G I +    +    + E   L   E  +L+YL  N  + V++
Sbjct: 122 FEHNINIEKNIPISELKFGNITINLHNKIVTFKDENLDLTPNEYNLLKYLFENCERAVSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++   I+G +D  VE    +  + +LRKK+ +      +++    G+ +
Sbjct: 182 EELLDKIWG-YDSEVETRAADDTVKRLRKKISHT--DVSIETVWGFGFRL 228


>gi|332668120|ref|YP_004450908.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332336934|gb|AEE54035.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 229

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 8/227 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V         +    ++          L  +    +  ++  L        
Sbjct: 6   ILLVEDEPKVASSIQQWLLEHDFLVDVAPDGAVGRHLALTNDYALILLDLNLPF--IDGF 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ + IR+    VP+I ++   S+   L+ F  G +D + KP   RE+LAR+  + +   
Sbjct: 64  EVCKAIRSTKPDVPIIMVTALGSMDEKLNGFAVGANDYLVKPFDFRELLARMRVLLKNAV 123

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                + +  +   + +  D ++    G + PL  +E  +L +L+ N G+ V+K  I   
Sbjct: 124 SFNTDNPSLLKVADLEMNLDTKNVYRAGHLIPLTPKEFGLLVFLIKNEGRVVSKYDIMEQ 183

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++ L +     NVVE +I+ LRKK+        + +K  +GY +  N
Sbjct: 184 VWDL-NFDSGTNVVEVYINFLRKKIDRNYEPKLIHTKPGMGYYLAAN 229


>gi|148652516|ref|YP_001279609.1| two component heavy metal response transcriptional regulator
           [Psychrobacter sp. PRwf-1]
 gi|148571600|gb|ABQ93659.1| two component heavy metal response transcriptional regulator,
           winged helix family [Psychrobacter sp. PRwf-1]
          Length = 244

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +       + G  ++  + +   +   +   ED S +   ++       E
Sbjct: 4   LLVEDEKNLGEYIKKGLTEAGFIVD--HHMTGLDGYHALMTEDFSVVVMDVMLPDVSGFE 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L +  RA     P++ ++    L   +   + G DD + KP    E++ R+ ++ RR   
Sbjct: 62  LIQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRANQ 121

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S+   +      +++    R          L  +E  +L+  +  +G+ + +T I S ++
Sbjct: 122 SDYKSSVIHMADLKMDIAKRTVYRGDTNIKLTAKEFALLQLFLERQGEVLPRTVIASQVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 182 DI-NFDSDTNVIDVAIRRLRIKIDDGFDIKLIHTVRGMGYKLE 223


>gi|29829025|ref|NP_823659.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606131|dbj|BAC70194.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 228

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE----DVSAIEAFLIGKG 57
            +L++D   V     A+    G ++    +   EE LQ+   E     V  ++  L  + 
Sbjct: 3   LLLVEDDNHVAAALSAVLARHGFAVTHARN--GEEALQALVPESSGFGVVLLDLGLPDQ- 59

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ R
Sbjct: 60  -DGYEVCGKIRKRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSR 118

Query: 118 RL------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R         +      G + +    R   V G V  L R+E  +L  L    G    + 
Sbjct: 119 RNAHEEGGAAAETALRLGSVHIELPTRQVSVDGSVVQLTRKEFDLLALLAQRPGVVFRRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI S ++    E      +E H++ LR KLR       +++ R +GY +
Sbjct: 179 QIISEVWRTSWEGTG-RTLEVHVASLRSKLRMPA---LIETVRGVGYRL 223


>gi|116623411|ref|YP_825567.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226573|gb|ABJ85282.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 225

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       +G  +E                 D+  ++  L   G+  L
Sbjct: 4   ILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLP--GKDGL 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A  + P++ ++        +   + G DD V KP   +E+ AR+ A+ RR  
Sbjct: 62  EVCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRAS 121

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V     +  ++G+   L   E ++L+  +  RG+ +++ Q+ +A +
Sbjct: 122 GDTDLETCSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAATW 181

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G  D      +V++HI+ LR+K+  +      + + R LGY  D
Sbjct: 182 GR-DTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRFD 224


>gi|313895549|ref|ZP_07829105.1| putative transcriptional activator protein Irlr [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975675|gb|EFR41134.1| putative transcriptional activator protein Irlr [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 225

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   +      +   + +++E   + +      +    D+  ++  +   GE  ++
Sbjct: 4   LLAEDDLRLGKLIQYMLEQNDITVEWVTNGDDIYEYATYTEYDILILDWMMP--GENGVD 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
               +R       ++ ++   S++  +   D+G DD + KP    E+LAR+ A+ RR   
Sbjct: 62  ACARLRKSGYDRAILMLTARDSVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRSTQ 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K+ +   E G  R+       E  G++  L  RE ++ + L  N G  V +  I   I+G
Sbjct: 122 KIQHEVDEIGGFRLNRTANILEKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L +  V  N ++S++  LRKKL      + + + R +GY ++
Sbjct: 182 L-ESDVSSNNIDSYMKMLRKKLDAASEGEAIKTIRGVGYKLE 222


>gi|254426228|ref|ZP_05039945.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188651|gb|EDX83616.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 97/222 (43%), Gaps = 5/222 (2%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D             + G  ++G  + +  +WL S    D+  ++  L       
Sbjct: 2   IILIVEDDPAQLRPLCIALSESGHLVDGVENAQEAQWLVSHKDYDLLILDWMLPV--LSG 59

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + L +  R   ++ P++ ++   +    +   D+G DD + KP+   E+LARV A+ RR 
Sbjct: 60  VSLCQHYRTLGKIAPVMMLTAKDTTADKVVGLDAGADDYLVKPVDIPELLARVRALGRRS 119

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +   +R   G + + +     E Q     L  RE  ++EYLM   G+ + +  I   ++
Sbjct: 120 PQWHGDRLSLGDLYLNTSTLTLERQKSCIRLSSREFHLMEYLMRRSGQVITRDNIEQTLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++    E N V + I +LR++L        + +    GY +
Sbjct: 180 -IWGTEPESNAVTALIWRLRQRLNELGAKSWLKTVYGTGYRL 220


>gi|221065046|ref|ZP_03541151.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220710069|gb|EED65437.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 239

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 21/236 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  +V  G      D G +++   S E    + +    DV+ I+  L   G   L
Sbjct: 3   LLLVEDDVMVASGIKLGLSDAGYAVDWVGSAERALEVLAQEAFDVAVIDIGLP--GINGL 60

Query: 62  ELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           EL R +R        +P++ ++   +LQ  +   D G DD + KP    E+LAR+ A+ R
Sbjct: 61  ELTRRLRSSDVESKAMPVLILTARDALQDRVQGLDWGADDYMVKPFELPELLARLRALMR 120

Query: 118 RLKVSNN-RAETGPIRVFSDGRDP---------EVQGE--VFPLPRRERRILEYLMANRG 165
           R + + +     G I + + GR           E +G      L  RE  +LEYL+ N  
Sbjct: 121 RSQAATSAVLNFGCIELDTAGRRAGARQLPQEGETEGRLLPIDLGPREWTVLEYLLLNAP 180

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           K  +K ++  A+ G +D  +  N VE ++S+LR KL        + S R  GY ++
Sbjct: 181 KPASKEKLLQALTG-WDREITPNAVEVYVSRLRSKLEPHG--VALRSIRGFGYRLE 233


>gi|310643897|ref|YP_003948655.1| two-component response regulator, potential cognate sensor kinase
           is yxdk [Paenibacillus polymyxa SC2]
 gi|309248847|gb|ADO58414.1| Two-component response regulator, potential cognate sensor kinase
           is YxdK [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     +     G      ++ +    +    + D+  ++  L        
Sbjct: 4   ILIVEDDPQISSLLQSYLEKYGYQGVVVSNFDQVLGVFQKVKPDLVILDVNLPRF--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              R IR  S  P++ +S        +    +G DD + KP H   +LA+V +  RR   
Sbjct: 62  YWCRQIRTQSTCPILFVSARDDKMDQVIALQNGADDYITKPFHPEVLLAKVESNLRRAYG 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +       + ++ D  +     +   +  +E  +LE LM    + V +  +  
Sbjct: 122 LYAVAQKSRTITVSGLTLYPDTMELVFHDKQVEMSHKEAALLELLMTYPKQVVGRVHLLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           A++  +   V EN +  +++++RKKL      D +++ R  GY +
Sbjct: 182 ALWDDYQY-VGENTLNVYVTRVRKKLSELGLEDIIETVRGAGYRL 225


>gi|153832803|ref|ZP_01985470.1| transcriptional regulator [Vibrio harveyi HY01]
 gi|148870937|gb|EDL69827.1| transcriptional regulator [Vibrio harveyi HY01]
          Length = 220

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 103/223 (46%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E  +     +      + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECLHVERISDVEPQWKKADLVILDRQLPD-GDSVQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            LP   +    VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  R    
Sbjct: 62  SLP-EWKKIKDVPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQLRAPDA 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + ++  T  + +    R+   +GE+  L R E  +L +L +N G+   + ++   +
Sbjct: 121 AEQGNADKVMTKDLEIDRATREVVFKGEMITLTRTEFDLLLFLASNLGRVFTRDELLDHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 WG-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 218


>gi|124024913|ref|YP_001014029.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123959981|gb|ABM74764.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 265

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 90/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++D         G  ++        + L      D+  ++  L       L
Sbjct: 5   ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     S +P++ I+    ++  +  F+SG DD + KP    E+  R+ A+ RR
Sbjct: 63  TLCQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRR 122

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +           + GP+ +  +  +         L   E  +L  LM   G+ VA +
Sbjct: 123 TNRAPLGSNNQQEILDYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLMQRHGQTVAPS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I   ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 183 LILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|108761671|ref|YP_629606.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108465551|gb|ABF90736.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 232

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 83/228 (36%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       +G  +                  D+  ++  L        
Sbjct: 8   ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPE--LNGF 65

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R      P++ +S        +   + G DD V KP   +E+LAR+ A+ RR  
Sbjct: 66  EVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRY 125

Query: 121 VSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S           G + V    R          L  +E ++L + +A+ G+   + ++ S
Sbjct: 126 PSAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLS 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221
             +G +        V++ + +LR K        P    + R LGY  +
Sbjct: 186 GAWG-YHYEGSARTVDNFMRQLRLKFEPDPEA-PRHFLTVRGLGYRFE 231


>gi|19704596|ref|NP_604158.1| two-component response regulator [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296327707|ref|ZP_06870248.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19714890|gb|AAL95457.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296155193|gb|EFG95969.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 233

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++            S++     E    + S    D+  ++  L  K     
Sbjct: 13  ILIIEDDKNIQRLLTLELRHKNYSVDSAYDGEQGIEMFSKNSYDLVLLDLMLPKK--SGK 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  ++ P+I I+   S+   ++  D G +D + KP    E+LAR+    R  + 
Sbjct: 71  EVCQELRKLAETPIIIITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 130

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           SNN+       I++    +   +      L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 131 SNNKQFYLENEIKMDILAKKVFLNEVEVSLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   EE +V+ +I+ LRKK+  K     + + R  GY   +
Sbjct: 191 -YDFDGEEKIVDVYINSLRKKIDPKSY--YIHTIRGFGYIFQY 230


>gi|71898251|ref|ZP_00680425.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71731990|gb|EAO34047.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 394

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + +         + G +++          L      D   ++  L   G   +
Sbjct: 172 ILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLP--GMDGI 229

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           E+ R +R  A  Q P++ ++   SL   L  FDSG DD + KP   +E+  R+ A+ RR 
Sbjct: 230 EVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRRG 289

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K    R  ETG +    D  +   +G++  L     +IL+ LM      V +  + + ++
Sbjct: 290 KGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDLETRVW 349

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +E  + + +  HI  LR  +        + ++  +GY I
Sbjct: 350 G--EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 389


>gi|206562479|ref|YP_002233242.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038519|emb|CAR54477.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 221

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +           G +++          L    R D+  ++A L   G    
Sbjct: 3   ILVVEDDAEIGAAIRGRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLP--GMDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR  
Sbjct: 61  TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N+    G + +    R  E+ G+   L R+E  +LE L +   +  +K ++ + ++ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +E    N VE +++++R+KL+       + + R +GY I
Sbjct: 181 FGNEPT-ANAVEQYVTRVRRKLQ--GSSVEIRTARGMGYQI 218


>gi|33595087|ref|NP_882730.1| transcriptional regulatory protein [Bordetella parapertussis 12822]
 gi|33565164|emb|CAE35960.1| transcriptional regulatory protein [Bordetella parapertussis]
          Length = 237

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEKV 60
           +LI+D             + G  +    S +    L+++ ++  D+  ++  L       
Sbjct: 5   LLIEDDQANARYLANGLTELGHMVTV--SGDGASGLENAMKDQWDIIILDRMLPNN-VDG 61

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L +   +RA   + P++ +S   ++   +D   +G DD + KP    E++AR+ A+ RR 
Sbjct: 62  LSILSTLRALGKKTPVLVLSALSAVDDRVDGLRAGGDDYLVKPFSFSELVARLDALVRRT 121

Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +   +        + V    +  +  G    L  +E R+L YLM +  + V +T +   I
Sbjct: 122 RPDPDVKELRIADLSVNVATQKVQRAGRPISLQPQEFRLLVYLMLHAHRIVTRTMLLETI 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +    + NV++  +S+LR+K+        + + R  GY++
Sbjct: 182 WG-YSFDPQSNVIDVQVSRLRRKIDASCATPLIHTIRGAGYTL 223


>gi|171915823|ref|ZP_02931293.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 225

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 5/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       D G + E     +      S+   D   ++  L   G+  L
Sbjct: 3   ILVVEDDPRTAEALRESITDAGWTAEVLMRGDEAVQCISTQAFDAVIMDIMLP--GKDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +RA H+  P++ +S    +   +   D+G DD + KP    E++AR+ AI RR  
Sbjct: 61  SIVKQLRAMHNSTPVLMLSARGDVDHRISGLDAGADDYLAKPFSMGEVVARIRAIARRGG 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S         + +    R  +  G+   L  RE R+++ LM N      +T +   ++ 
Sbjct: 121 ESGAILLRLADLTLDVPHRVAQRAGKNIELSPREFRLVQVLMQNVDTVCNRTMLLRLVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            ++     N+V+ ++ KLR K+        + + R +GY
Sbjct: 181 -YNFDPGTNLVDVYVRKLRDKIDQGHAIPLLHTVRGVGY 218


>gi|152981341|ref|YP_001354865.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281418|gb|ABR89828.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 229

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +     A     G  L+   +      L +    D   ++  L   G   L
Sbjct: 3   ILIIEDNADIVANLYAFLEPRGYVLDSAANGYAGFALAAQHDYDAVILDIKLP--GIDGL 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L R +R       P++ ++   +L   +  FDSG DD + KP    E+  R+ A+ RR 
Sbjct: 61  TLCRKMRDELQKDTPVLMLTARDTLDDKVAGFDSGADDYLVKPFSLLEVEVRLKALVRRA 120

Query: 120 KVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +  N   N    G +   +     +  G    L +   +IL  LM    K V++  +   
Sbjct: 121 RGKNQGTNFLSVGNLVFDTSTYQVKRDGIPISLTKTGFKILTCLMKEAPKVVSRETLELE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G  D   + + + +HI  LR+ L     F  + + + +GY +
Sbjct: 181 VWG--DHPPDSDALRTHIHALRQALDKAHPFAMLRTVQGIGYRL 222


>gi|119488832|ref|ZP_01621794.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119454993|gb|EAW36135.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 624

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 94/223 (42%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   +  G          +++  ++ L   E  ++   + +          G   
Sbjct: 3   ILLVEDDKGLAQGLEDALTHQRYAVDLAWDGLMGWELAEALTYDLILLDLLLPKLDGIN- 61

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
               + +R      P++ ++   S    ++  D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  --FCKRLRNQGDFTPVLLMTAQNSSSQKVEGLDAGADDYLVKPFEVSELLARIRALLRRG 119

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + +   E G +R+           ++  L  +E  +LE  + +  +  +++ +   ++
Sbjct: 120 NSALSPILEWGSLRLDPKNCQVTYGDKLLKLTAKEYELLELFLRHPHRIFSQSALLDHLW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             FD+   E+ V + I  LR+KL+      D +++   LGY +
Sbjct: 180 -SFDDPPSESAVRTQIKGLRQKLKQSGAVRDLIETVYGLGYRL 221



 Score = 64.2 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 1/116 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +G   +     +  E   S +    L +    D+  ++       E   
Sbjct: 372 LLIVDDDLALAEGIATVANTRKIYTEIAISPQQARTLIAENPLDIVLLDLSFPDSTEAGF 431

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           EL   + +HS  +P+I  +   S    +     G    + KPI   ++L  +  + 
Sbjct: 432 ELLEELNSHSTSLPVIVFTAKESFADRVKVARLGGRGFLQKPISPSQVLDTITRVL 487



 Score = 62.2 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D+   + D   ++    G  L   +  + +++ Q+  +     +           +
Sbjct: 497 ILIVDNEPEILDRIRSVLEPWGFYLILLD--DPQQFWQTLEQSTPELLILDFAMPDLSGV 554

Query: 62  ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-----A 113
           EL +++R       + +I +S+  + Q     +++G DD + KP+   E +ARV      
Sbjct: 555 ELCQVVRNDPRWQDLSIIILSEERNRQIVEQVWNAGADDYIQKPLVEPEFIARVLNCLER 614

Query: 114 AIYRR 118
              RR
Sbjct: 615 NQLRR 619


>gi|91226115|ref|ZP_01261005.1| transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|269967767|ref|ZP_06181815.1| transcriptional regulator [Vibrio alginolyticus 40B]
 gi|91189349|gb|EAS75627.1| transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|269827673|gb|EEZ81959.1| transcriptional regulator [Vibrio alginolyticus 40B]
          Length = 220

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 102/223 (45%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E  +     +      + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECLHVERIADVEPQWKKADLVILDRQLPD-GDSVQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            LP   +    VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  R    
Sbjct: 62  CLP-EWKQIKDVPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQLRAPDS 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + ++  T  + +    R+   + E+  L R E  +L +L +N G+   + ++   +
Sbjct: 121 AEQSNADKVITKDLEIDRSTREVTYKDELITLTRTEFDLLLFLASNLGRVFTRDELLDHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 WG-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 218


>gi|121605441|ref|YP_982770.1| osmolarity response regulator [Polaromonas naphthalenivorans CJ2]
 gi|120594410|gb|ABM37849.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 245

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +      +     +   R+ V  I   L+  GE  L
Sbjct: 13  ILILDDDARIRDLLRRYLAQEGFDVILAEDSKALN--RIMLRDAVDLIVLDLMMPGEDGL 70

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA +   P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 71  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRRP 130

Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +               GP       R  +  GE  PL   E  +L+ L+ +  + +++ 
Sbjct: 131 TAEVPGAPSSDQEVINFGPFSFDMSLRTLQKNGEELPLTTGEFAMLKTLVRHPRQPLSRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 191 KLAQLARGR-EFEPFDRSLDVQVSRLRKLIETDAAVPRYIQTVWGIGYVF 239


>gi|310642323|ref|YP_003947081.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309247273|gb|ADO56840.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 226

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 95/222 (42%), Gaps = 11/222 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           +D   ++   +     +G  + E     E    L +    D++ ++  +   G    E+ 
Sbjct: 2   EDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVP--GMDGFEVC 59

Query: 65  RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
           R IR  ++ + +I ++     Q  +     G DD V+KP    E++AR+ ++ RR+ V  
Sbjct: 60  RRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVNVHR 119

Query: 124 NRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             A     ++GP  +    +  +  G++  L   E  ++++ +      +++  +   ++
Sbjct: 120 ETAAKVSFQSGPFTLDLIAKQFKKNGQLIELTPTEFSLIQFFLEKENTPLSRDVLLDHVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           G  +   +  +V+ +I +LR+K+  N      + +    GY 
Sbjct: 180 GK-EYMGDPKIVDVNIRRLRQKIENNPSEPAFLQTVWGHGYK 220


>gi|167750378|ref|ZP_02422505.1| hypothetical protein EUBSIR_01352 [Eubacterium siraeum DSM 15702]
 gi|167656738|gb|EDS00868.1| hypothetical protein EUBSIR_01352 [Eubacterium siraeum DSM 15702]
          Length = 232

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + +D   +++            +E F S E           D+   +  L   G   +
Sbjct: 5   IYITEDDDSIRELVTVALSAYSYEVESFVSAEDCLAATEKQVPDIFLFDIMLP--GMDGV 62

Query: 62  ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +  +I+R +      P++ ++   +    +   ++G DD + KP    E+ AR+ A+ RR
Sbjct: 63  QAVKILRENEQTKNTPILMLTAKSAEIDKVFGLENGADDYLTKPFGIMELAARIKALLRR 122

Query: 119 LKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              S     +++   G I V +  R+    G    L  +E  +L YL+ NR + V++ ++
Sbjct: 123 SGRSTSDSASDKITAGGITVNTSLREVSRDGRPIELTLKEYELLLYLLKNRARVVSREEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            + ++G+ D   E   ++ HI  LRKKL +       + + R +GY  
Sbjct: 183 LTKVWGI-DFVGETRTLDMHIGTLRKKLSDDAENAHLIKTVRGVGYRF 229


>gi|220926004|ref|YP_002501306.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219950611|gb|ACL61003.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 222

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 98/219 (44%), Gaps = 9/219 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V     A+  + G +++     E   +   +   D++ ++  L       L
Sbjct: 3   ILLVEDDPRVARKVAAVLTEAGYAVDHVEDGEEAWFRGDTEDYDLAVLDLGLP--KMDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + +  RA    +P++ ++   +    ++  D+G DD + KP    E+LARV A+ RR  
Sbjct: 61  AVLKRWRAAGRDLPVLILTARGAWAERVEGIDAGADDYLTKPFAMEELLARVRALLRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +     +GP+ + +             L   E R L YLM + G+ +  T++   +Y 
Sbjct: 121 GRAVPVFISGPVVLDTRKMRVTADDVPLNLSPLEYRCLSYLMHHAGRVIPPTELMEHLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             D   + N +E  + +LR+KL    G D ++++R  GY
Sbjct: 180 AHDHDRDPNALEVLVGRLRRKL----GVDLIETRRGFGY 214


>gi|197119049|ref|YP_002139476.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197088409|gb|ACH39680.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 229

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V          +   +    S E   +  ++   D+  ++  L   G   +
Sbjct: 3   ILVIEDEPKVAGALKKGLEAENYMVSVAGSGEDGFFRLNTEVFDLVLLDLMLP--GRDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R      P++ ++   S+   +   DSG DD + KP    E+LAR+  + RR K
Sbjct: 61  EVLTALRKQGFDTPVLILTARDSVDDRVLGLDSGADDYLVKPFAFPELLARIRLVLRREK 120

Query: 121 VSNNRAETGPIRVFSD---GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +     +         R      +   L  RE  +LEYL+  +G  V++  +   +
Sbjct: 121 KEKEQVLKLFLADLDLDLVTRKVVRHDQEIELTAREFELLEYLLRYKGNIVSREMLSRDV 180

Query: 178 YGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + + D +   +NV++ HI++LR+K+        + + R LG++++
Sbjct: 181 WQVKDRSTPLDNVIDVHIARLRRKIDGPFKLKLLKTVRGLGFTVN 225


>gi|148555150|ref|YP_001262732.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148500340|gb|ABQ68594.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 236

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +L++D   ++        ++G  +    +   E W+  +A   D+  ++  L   G   
Sbjct: 6   ILLVEDDPSLRVLTARALQENGYVVRPAATG-PEMWIAFNAEPIDLIILDIMLP--GTNG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +EL R +R  S VP+I IS   S    +   + G DD + KP   RE++ARV A+ RR  
Sbjct: 63  IELCRQLRQKSDVPIIFISAKGSETDRVIGLEIGADDYLAKPFGTRELMARVRAVLRRGG 122

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                 +   N A     +V    R+     G V  L   E  +L   + N  + +A+ +
Sbjct: 123 MDRQSEQSRRNEARFDGWQVNFPRRELTSPSGAVVDLTGAEFDLLSSFLHNAQRVIARER 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   +         +  ++  +S+LR+KL+ +    P+ + R +GY  +
Sbjct: 183 LIE-LSRTRLGDASDRSIDVLVSRLRRKLQGEGRDAPITTVRGVGYMFN 230


>gi|326799051|ref|YP_004316870.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326549815|gb|ADZ78200.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 228

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +         +   S+   +S      +      D+  ++  L        
Sbjct: 4   ILLIEDDRRLASFIRKGLEEQLFSVSCVSSGYEALAVTQDIYFDLIILDIMLPDV--SGF 61

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IR      PLI +S   + +  +    +G DD + KP H  E+LAR+ A  RR  
Sbjct: 62  QICTAIRERKITSPLIILSALDNPEEKVKGLQAGADDYLGKPFHFEELLARINAQLRRKS 121

Query: 121 VSNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +      + V    +  +  G+   L  RE ++L +L+ NR + V++TQI  A+
Sbjct: 122 FEKGILDVQKYADLEVNIAEQGAKRAGKNILLSPREYKLLLFLLNNRERVVSRTQIAEAV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +       NVV+ +I+ LR K+        + + +  GY +
Sbjct: 182 WDIH-FNTHTNVVDVYINYLRNKIDKGFAAPLIHTVKGRGYML 223


>gi|268316384|ref|YP_003290103.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333918|gb|ACY47715.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 236

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF-EEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D A V++         G  ++   + E   E   +    D+  ++A L   G   
Sbjct: 6   LLIIEDDAEVREALALCLETAGYEVDAVATGEAGREKAITVPGYDLIILDARLP--GRDG 63

Query: 61  LELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            E+ R +R    V  P++ ++     +  L  F+ G DD V KP    E+LARV A+ RR
Sbjct: 64  FEVLRELREEDGVMTPVLMLTGLNDREHRLKGFELGADDYVAKPFAPEELLARVEAVLRR 123

Query: 119 LKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            K        R   G I V          G+  PL   E R+L YL+ + G+ V + Q+ 
Sbjct: 124 AKRRPQPEKRRFRVGGIEVDLVDGTVTRDGQPVPLTDMEFRLLRYLILHHGRTVTREQLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++ L    V+   ++ HI+ LRK +  +     P+ S   +GY +
Sbjct: 184 REVWELP-PTVQTRTIDRHINALRKIMDGEDETSWPIQSVYGIGYRL 229


>gi|220929136|ref|YP_002506045.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999464|gb|ACL76065.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 234

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +   +    +G  +   FN  +           D+  ++  L       
Sbjct: 8   ILVVDDETKITEVVKSYLEHEGYKVYTAFNGKQAMNGYNEF-NPDLIILDLMLPD--ISG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR  S VP+I ++   S    +   D G DD V KP   +++LARVAA+ RR  
Sbjct: 65  EEICKRIRKISLVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPKQLLARVAAVLRRTV 124

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             ++         + G + + +   +    G +  L   E RIL  +     K   + ++
Sbjct: 125 KESSEDNKSKIIFDNGNLVIDTFVHEIRKAGSIINLTPNEYRILITMAGYPKKTFTREEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            S   G  D    +  V++HI  LR+K+ +       + +   +GY  
Sbjct: 185 ISMALG-DDFEGFDRTVDTHIKNLRQKIEDDPKAPKYLVTVHGVGYRF 231


>gi|254507357|ref|ZP_05119493.1| osmolarity response regulator [Vibrio parahaemolyticus 16]
 gi|219549817|gb|EED26806.1| osmolarity response regulator [Vibrio parahaemolyticus 16]
          Length = 239

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 TELPGAPSSEESVVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|160946207|ref|ZP_02093418.1| hypothetical protein PEPMIC_00169 [Parvimonas micra ATCC 33270]
 gi|158447730|gb|EDP24725.1| hypothetical protein PEPMIC_00169 [Parvimonas micra ATCC 33270]
          Length = 218

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 101/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++G      + G  +    + + +E L +    D++ +   +       L
Sbjct: 3   ILVVEDDQFIREGISEYLSEFGYEI--IQAKDGQEALINFNNNDINLVILDIQIPFLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S++P++ ++ +   +  ++ F S  D  + KP     +  R+ ++ +R   
Sbjct: 61  EVLKEIRKKSKLPVLMLTAFNDEEYKINAFSSLADGYMEKPFSLPVLKVRIDSLIKRHYS 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              + E     V       +  GE   +  +E  IL+YL+ N G  + + QI   ++   
Sbjct: 121 GQEKFEYKDAEVNFTSYTAKYNGEDVDINAKELEILKYLLENEGHALTRAQIIDNVWKET 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL    G D + + R +GY ++
Sbjct: 181 DEIPFDRVIDVYIKELRKKL----GLDCIVTIRNVGYKLE 216


>gi|88858419|ref|ZP_01133061.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas tunicata
           D2]
 gi|88820036|gb|EAR29849.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas tunicata
           D2]
          Length = 227

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   + +      G  G +L   N  +    L+++  +D + I   ++       
Sbjct: 3   ILLIDDDIALCELLNEYLGAQGFNLVIKNDGDA--GLRAALADDFALILLDVMLPKRDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +++R     P+I ++        +   + G DD + KP +HRE+LARV AI RR++ 
Sbjct: 61  EVLKLLRQQKLTPVIMLTARGEDFDRIFGLELGADDYLAKPFNHRELLARVKAITRRIEH 120

Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +T       I V +  R+    G    L   E  IL  L+ N G+ ++K QI   
Sbjct: 121 ITAANKTQNLLWHDIEVKTQSREVYAAGHALLLTGTEYEILHLLLKNAGEIISKEQISEQ 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + G    A +   ++ H+S +RKK+   +  + + + R  GY  
Sbjct: 181 VLGRRLAAFD-RSIDMHVSNIRKKIAEHISDERIKTIRGTGYIF 223


>gi|291460016|ref|ZP_06599406.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291417357|gb|EFE91076.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 226

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  L+ +   ++  + G   +  +          S   D+  ++  L   G   +
Sbjct: 3   ILVIEDEFLLSESVKSILTEHGFEADTVSDGAEGLIYAKSGAYDLLILDVMLP--GMNGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R     +P++ ++    L   ++  ++G D  + KP   RE++A V A+ RR  
Sbjct: 61  ALARQLRKERCGMPILMLTARSELLDRVEGLNAGADYYLTKPFDERELMACVNALLRRQG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N+   G   +  D            L  RE  ++  LM  +GK + K QI S ++G 
Sbjct: 121 AEVNQLSFGNTSLDLDSGTLLCGERELRLSAREFDVMRLLMQAKGKNLRKEQILSRVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    EN VE ++  LRKKL++      + S R LGY ++
Sbjct: 180 FDSEATENHVEVYVGFLRKKLKSIGSDLSIVSVRRLGYHLE 220


>gi|120613269|ref|YP_972947.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|326319347|ref|YP_004237019.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|120591733|gb|ABM35173.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
 gi|323376183|gb|ADX48452.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 224

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 109/223 (48%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG +      G +++   S  + +  L ++   D+  ++  L       
Sbjct: 3   ILIAEDDQVLADGLLRTLRGSGAAVDHVASGSDADTVLATTQEFDLLILDLGLPR--MHG 60

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           L++ + +R   S +P++ ++   S+   +   D G DD + KP   +E+ ARV A+ RR 
Sbjct: 61  LDVLKRLRGRGSALPVLILTAADSVDERVKGLDYGADDYMAKPFSLQELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +++    GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGATSSTIRHGPLVYDQAGRMATIDGKLVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 -EWGEEVSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220


>gi|49081810|gb|AAT50305.1| PA4885 [synthetic construct]
          Length = 230

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +      G+ G +++         +L    R D+  ++  L   G    
Sbjct: 3   ILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVILDVMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-----IY 116
           ++  ++R    VP++ ++    LQ  +   + G DD + KP    E+L R+       + 
Sbjct: 61  QIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVV 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R       + +   +++    R    QG+V  L  +E  +L  LM   G+ +++T I S 
Sbjct: 121 R----EAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASE 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +   + NVV+  I +LR K+ N      + + R +GY  +
Sbjct: 177 VWDM-NFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCE 220


>gi|319763422|ref|YP_004127359.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
 gi|317117983|gb|ADV00472.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
          Length = 227

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G   +   +      +      D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGEYLRQGLSEAGYVADLVPNGTDGLHMALHGAYDLVILDVMLP--GLNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R    Q+P++ ++    ++  +   + G DD + KP    E+LARV  I RR  
Sbjct: 61  QVLQSLRERGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGP 120

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N         + +    R     G    L  +E  +LE LM   G+ + ++ I S ++
Sbjct: 121 AGNEGTMLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  + +LR K+        + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRMKIDEGHAVKLIQTVRGMGYVLDV 223


>gi|293371962|ref|ZP_06618363.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CMC 3f]
 gi|292633080|gb|EFF51660.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CMC 3f]
          Length = 248

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V    +    ++G              L  +   D+   +  L        
Sbjct: 24  ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLP--KMDGF 81

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR  +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R+ 
Sbjct: 82  ELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVA 141

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            +R+    +D E       L  +E  +L Y++ N  + +++ +I   
Sbjct: 142 GNAQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIAEK 201

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++         N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 202 VWNTH-FDTGTNFIDVYINYLRKKIDRDFEPKLIHTKAGMGFIL 244


>gi|269216812|ref|ZP_06160666.1| subtilin biosynthesis regulatory protein SpaR [Slackia exigua ATCC
           700122]
 gi|269129619|gb|EEZ60703.1| subtilin biosynthesis regulatory protein SpaR [Slackia exigua ATCC
           700122]
          Length = 244

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D    +   DG +++  N       L + +R D+   +  +   G    
Sbjct: 28  ILVVDDDAAITDLLSRVLARDGHAVDAANDPVSVLGL-ALSRYDLILCDVMMP--GMDGF 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           EL   IR     P++ ++   + +  +     G DD + KP    E+ A+V A  RR  +
Sbjct: 85  ELVGRIRHLVDAPILFLTAKVAEEDAVFGLGLGADDYIRKPFGIVELRAKVGAHVRREER 144

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V  +    G +RV  D R+    G   PL   E  + E L  +RG+ +++ QI    +G 
Sbjct: 145 VRTHMLALGDVRVDLDARELSAHGSPVPLTPTEYAVCELLAMHRGQVLSREQIRERAFGW 204

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             +A ++  +  H+S  R KLR     DP+++ R +GY 
Sbjct: 205 ASDAGDD-AISMHVSNARAKLRRA-NVDPIETVRGMGYK 241


>gi|268608227|ref|ZP_06141954.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 262

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59
            +LI+D   + +     F   G ++   N  E    +  +      +  ++  L      
Sbjct: 43  ILLIEDDHDICEVITDYFNTKGTAVTAVNDGEKALGIIDEGLESYGLVLLDIMLPNA--D 100

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
              + R IR  S +P+I I+     +  +  +D G DD + KP     +  +  A+ +R 
Sbjct: 101 GFTICRSIRKRSDIPVIFITARGREEDMIFGYDLGCDDYIVKPFLLSVLYMKCEAMMKRA 160

Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    E G IR+ +      +  +   LP +E  IL YLM ++   + +  I + +
Sbjct: 161 DKLSGQTVLECGAIRLDTRMLCCFINEKEIELPPKEFAILRYLMEHQDWTIDRDTILNRV 220

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D    + VV+SHI KLRK L +      + +    GY +
Sbjct: 221 WG-YDYFGSDRVVDSHIKKLRKALGSAG--KQIKTVVGRGYRL 260


>gi|256829868|ref|YP_003158596.1| winged helix family two component transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579044|gb|ACU90180.1| two component transcriptional regulator, winged helix family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 229

 Score =  210 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 5/212 (2%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
             A    DG  +              +   D+  ++  L       +++ + +R  S+VP
Sbjct: 19  VKANLELDGFMVLSATDGASGLAAVQANAPDLVLLDLGLPD--IDGIKVCQTLRRDSEVP 76

Query: 75  LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIR 132
           +I +S   ++   L   + G DD + KP +  E+ AR+  + RR++ S        G I 
Sbjct: 77  VIMLSARDTVADKLLGLECGADDYLVKPFNALELSARIRTVLRRIRRSETATAQRNGNII 136

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +     +  +QG    L R E  +LE  +A+ G+ + +  I S  +G          V+ 
Sbjct: 137 LDYRSHEATIQGRQVRLTRTEFSLLELFVAHPGETLTRDFIQSQNWGDSKLYSHSRAVDV 196

Query: 193 HISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
           H+ +LRKK+  N      + +   +GY  + N
Sbjct: 197 HVQRLRKKIEENPQAPRIILTVAGVGYRFEPN 228


>gi|255020263|ref|ZP_05292332.1| Two-component system response regulator OmpR [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970405|gb|EET27898.1| Two-component system response regulator OmpR [Acidithiobacillus
           caldus ATCC 51756]
          Length = 240

 Score =  210 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   ++   +        S+ G  S    + +      D+  ++  +   GE   
Sbjct: 6   ILLVDDDPRLRSILLRYLEMQDFSVCGVASTALMDRMLEREFFDLLLLDVMMP--GEDGF 63

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E   R+ R   Q+P+I ++    L   +     G DD + KP    E++AR+ A+ RR  
Sbjct: 64  EACARLRRQEPQLPIIMLTARGDLDDRVQGLSLGADDYLAKPFEPEELVARIRAVLRRSQ 123

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                K S      GP R+  D R      E  PL   E  +L  L ++  + +++ ++ 
Sbjct: 124 EPDMAKPSPGAIHFGPFRLALDTRSLWRGEERIPLTETEFSLLHALASHPWQTLSRDRLI 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I    DE      V+  IS+LR+ + +       + +    GY  
Sbjct: 184 QMIR-AGDEVPGARGVDVFISRLRRLIEDDPATPRYLQTVWGRGYVF 229


>gi|320332983|ref|YP_004169694.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754272|gb|ADV66029.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 249

 Score =  210 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 88/220 (40%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++        +G  +   ++    E L   A      +   ++  G    
Sbjct: 32  ILIVEDDPGIREYLSLGLRYEGFDVR--SAATGGEGLTQYAEHGADLVVLDVMLPGPDGF 89

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R +RA   VP++ ++   S+   +   +SG DD + KP    E++AR+  + RR + 
Sbjct: 90  AFLRDLRARDAVPVVMLTARDSVDDRILGLESGADDYLTKPFAFGELVARIRTVLRRARP 149

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +    R+    G+   +      +L +L  +  + + K+ I  A++G 
Sbjct: 150 DTLGIVRYADLELNETSREARRGGQRLDMRPTTFDLLVFLARHPERVLPKSVILDAVWGP 209

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 +NVVE ++   R+ L        + + R  GY +
Sbjct: 210 -QFLGSDNVVELYVGYARRALGTPP---LLHTLRGAGYML 245


>gi|290955694|ref|YP_003486876.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645220|emb|CBG68306.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 229

 Score =  210 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G      +S E      ++ R D+  ++  L   G    
Sbjct: 6   LLVVDDDPPIADLVATVARYEGWEAVTAHSGEEALRQAAAFRPDIVVLDLMLP--GVDGF 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +R     VP++ ++    +   +     G DD + KP    E++AR+  + RR  
Sbjct: 64  GVLDRLRQSGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 123

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +      + +  D R+     ++  L   E  +L YLM      + K QI   +
Sbjct: 124 GPAFQRSVLHVADLSMDEDTREVRRGDKLLTLTPTEYEVLRYLMRKSPTVLTKAQILDHV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +      NVVE  +S+LR+KL +  G   + + R  GY +
Sbjct: 184 W-EYGFGGRSNVVELVVSRLRRKLDD-TGEPLIHTVRGFGYVL 224


>gi|254391878|ref|ZP_05007072.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294816204|ref|ZP_06774847.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326444537|ref|ZP_08219271.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197705559|gb|EDY51371.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328803|gb|EFG10446.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 233

 Score =  210 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V+ G     G  G  +E     E         R D+  ++  L       LE
Sbjct: 5   LLIEDDPAVQKGVSLALGRRGHDVEVAARGETGLLALERYRPDLVLLDLMLPQ--MSGLE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IR   QVP+I +S        +   ++G DD + KP     I AR+ A+ RR+  +
Sbjct: 63  VCRRIRESKQVPIIILSARGDEIDMVVGLEAGADDYITKPAGGAIIEARMKAVLRRVAPA 122

Query: 123 NNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +  E          G + V          G    L   E ++L +L A  G+  ++ Q+
Sbjct: 123 QDAQEAIPPAGAEHYGDLTVDRTTLVVTKHGAELALAPSELKLLLFLTAAPGQVYSRQQL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              ++  +    +  +V++ + +LR K+ N       V + R  GY  
Sbjct: 183 LEQVW-EYVFYGDVRLVDACVMRLRAKIENHPRRPVYVQTVRGFGYRF 229


>gi|91783748|ref|YP_558954.1| two component transcriptional regulator QseB [Burkholderia
           xenovorans LB400]
 gi|91687702|gb|ABE30902.1| Putative QseB, two component transcriptional regulator, winged
           helix family [Burkholderia xenovorans LB400]
          Length = 223

 Score =  210 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 103/221 (46%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G  A     G +++             +    +  ++  L       +E
Sbjct: 8   LLVEDDDLIGCGVEAGLRQAGFTVDWTRDGHKAGLALDTTVYALVVLDLGLPRV--SGME 65

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L + +R +   VP++ ++   ++   +   ++G DD + KP    E++AR  A+ RR + 
Sbjct: 66  LLKRVRDSGKDVPVLVLTARGTVADRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQG 125

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  +     + V    +  +V     PL  RE  IL  L+ N+G   +++++  ++YG 
Sbjct: 126 RSVEQIRYLDLTVNPAAQTVDVGTRRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG- 184

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E +E N +E H+S LRKKL    G   + + R +GY ++
Sbjct: 185 WQEEIESNAIEVHVSNLRKKL----GAKLIKTVRNIGYVVE 221


>gi|187933594|ref|YP_001887202.1| response regulator [Clostridium botulinum B str. Eklund 17B]
 gi|187721747|gb|ACD22968.1| response regulator [Clostridium botulinum B str. Eklund 17B]
          Length = 218

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++I+D   + +         G  S + F+ LE    L      D+  ++  L   G    
Sbjct: 6   LIIEDDEAISNLIKINLSMVGYKSKQLFDGLEAFN-LLKEESFDLILMDIMLP--GMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + I     +P+I ++    L   +    SG +D + KP    E+LAR+  + RR   
Sbjct: 63  ELMKKI-KDLNIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVLRRYSK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           ++N  E G ++++ + R  +   E   L  +E  ++  L+ N+   +++  +   I+G +
Sbjct: 122 NSNCIEFGNLKIYEEERSIKKDDETIDLTLKEFELMVLLVKNKNMALSREYLLEKIWG-Y 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   E   +++HI KLRKKL      D + +   +GY ++
Sbjct: 181 EYMGETRTIDNHIQKLRKKLD---IADNIKTVYKIGYRLE 217


>gi|149189237|ref|ZP_01867524.1| osmolarity response regulator [Vibrio shilonii AK1]
 gi|148836991|gb|EDL53941.1| osmolarity response regulator [Vibrio shilonii AK1]
          Length = 239

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSQEESVVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEIDPSKPRYIQTVWGLGYVF 232


>gi|81298906|ref|YP_399114.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81167787|gb|ABB56127.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 249

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 91/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD + + +         G  +         + L      D+  ++  L        
Sbjct: 5   ILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRV--DGF 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + +R     +++P++ ++     Q  ++ F++G DD + KP    E+LARV A+ +R
Sbjct: 63  TVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLQR 122

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GP+ +  +  +         L   E  +L  L+   G+ VA ++
Sbjct: 123 TDRIPHAARHSEILSYGPLTLIPERFEAIWFNRTVKLTHLEFELLHCLLQRHGQTVAPSE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G +D   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 183 ILKEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 231


>gi|254296317|ref|ZP_04963774.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157805706|gb|EDO82876.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
          Length = 210

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 9/213 (4%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           ++ +G       DG +++     +    L +   E    +   L       +++ R +RA
Sbjct: 1   MIAEGVRKALKADGCAVDWVQDGDA--ALTALGGEAYDLLLLDLGLPKRDGIDVLRTLRA 58

Query: 70  HS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
               +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR    S +   
Sbjct: 59  RGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGRSESMIR 118

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +        + G    L  RE  +LE L+A  G  ++K+Q+   +YG + E +  
Sbjct: 119 HGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG-WGEEIGS 177

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N VE +I  LRKKL    G D + + R LGY +
Sbjct: 178 NTVEVYIHALRKKL----GSDLIRNVRGLGYMV 206


>gi|325520568|gb|EGC99646.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia sp. TJI49]
          Length = 219

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+  G        G  ++            ++ R  +  ++  L   G+   
Sbjct: 3   LLLVEDDDLIGSGLEISLSQAGYHVDWLRDGHAAAAALATTRFALVVLDLGLP--GKSGT 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R     VP++ ++   ++   +   D G DD + KP    E+LAR  A+ RR +
Sbjct: 61  QLLRALREAGDTVPVLVLTARGNVADRVSGLDDGADDYLAKPFDLSEVLARCRALVRRSQ 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + +      I +               L  RE  IL  L+++ G   ++ ++   +YG
Sbjct: 121 GRAGDEIVWRDITIDLGTHTVTRDAARIALTAREWAILVQLVSHPGIPQSRARLEDGLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E +E N +E H+S LRKKL    G D + + R +GY +D
Sbjct: 181 -WQEGLESNAIEVHVSNLRKKL----GADLIRTVRGIGYVVD 217


>gi|15894830|ref|NP_348179.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024503|gb|AAK79519.1|AE007665_6 Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325508968|gb|ADZ20604.1| Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 227

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V +   A    +G ++  + + +  + ++   +     +   L+       
Sbjct: 4   ILVVEDEENVLEIVRAYLEKEGYNV--YCTTQGLDGIELFKKVKFQLVILDLMLPDIDGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ RI+R  S V +  ++   +L+  ++  + G D+ + KP   RE+ ARV A++RR+  
Sbjct: 62  EVCRILRRISDVYIFILTAKVALKDRIEGLNMGADEYLLKPCSPRELTARVNALFRRVFK 121

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N  +   G +++ SD R   ++ +   L   E  IL  L+ N+G+ +++ Q+   ++G
Sbjct: 122 DENNTDFDDGNLQICSDKRIVRIKDQQISLTPNEFDILYALVLNKGRVLSREQLIERVFG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           L D    +  ++ HI  +RKK+         + +   LGY  
Sbjct: 182 L-DFDGFDRTIDVHIKNIRKKIEEDTKKPKYIITVTKLGYKF 222


>gi|17158742|ref|NP_478253.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134691|dbj|BAB77249.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 245

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 99/236 (41%), Gaps = 20/236 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
           +L++D   +          +   ++   +  E   +L+    +  ++  +  L   G   
Sbjct: 4   LLVEDEPDLGASIQRKLSKEKYVVDWVLDGNEAWIYLEDDLTQYTLAIFDWLLP--GMSG 61

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           +EL + +R     +P++ ++   S+   +   D+G DD + KP    E+LAR+ A+ RR 
Sbjct: 62  IELCKRLRNRGNALPVLMLTAKDSMADKVAGLDAGADDYLIKPFGMAELLARLRALQRRS 121

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRG 165
                    +    + + G + +         Q      +V  L ++E ++LEYLM    
Sbjct: 122 ALGGASLTSQFQPLQLQVGGLILDCGNCTISRQYPNGENKVIYLTKKEFQLLEYLMKRPN 181

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + + QI + +Y    E V  NVV + I  LR+KL        +++   +GY  +
Sbjct: 182 TVITRDQILNHLYAFSAERV-SNVVAAQIRLLRRKLSEYGCDGLIETVPSMGYRFN 236


>gi|89055982|ref|YP_511433.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88865531|gb|ABD56408.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 219

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           F+L++D A + D  +   G DG +++   +L   E   + A  D+  ++  L        
Sbjct: 3   FLLVEDNAELADSVVQRLGLDGHAVDHAGTLAEAEDCLAVAEYDLILLDVMLPD--GDGR 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           +     R   + P+I ++    +   +   D G DD + KP    E+ AR  A+ RR   
Sbjct: 61  DRLATWRGRLETPVIVLTARSQISDRVGALDQGADDYLTKPFDFSELEARCRAVLRRRGG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + N    G               +V  L  RE R+LE    N G  ++K+Q+   ++  
Sbjct: 121 AAKNEVTLGDAVFDPTAGTLRAGEQVVDLRNREIRLLEVFARNPGHILSKSQLMDRLF-S 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D  V EN +E ++ +LR+KL        +++ R  GY I
Sbjct: 180 HDADVTENAIEVYVGRLRRKLDEVGVK--IETVRGAGYRI 217


>gi|187933012|ref|YP_001886059.1| ResD family transcriptional regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721165|gb|ACD22386.1| transcriptional regulatory protein ResD [Clostridium botulinum B
           str. Eklund 17B]
          Length = 227

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + +   A    +G   +  N            R D+  ++  L        
Sbjct: 4   ILLVDDEKKICEFVKAYLDKEGFVTDEANDGCTAIRYFDLNRYDLVILDRMLPD--ISGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  S VP+I ++     +  L  F  G DD + KP + +E++ RV +I +R   
Sbjct: 62  EVCNHIRNKSDVPIIMLTAKIDEEDRLGGFKLGCDDYLCKPFNIKELIFRVKSILKRSGK 121

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + R        I + +   +  V+G+   L   E +IL  + +N  K  ++ ++  ++ 
Sbjct: 122 IDFRDIMKFKQGIEINTSSHEVTVRGKKILLTNTEYKILLLMASNPQKIYSREELLESVI 181

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             + E ++  V++SHI  LR+K+  N      + +   +GY  +
Sbjct: 182 EEYYEKMD-RVIDSHIKNLRQKIEVNSRDCKIIKTIYGVGYRFE 224


>gi|71906819|ref|YP_284406.1| two component transcriptional regulator [Dechloromonas aromatica
           RCB]
 gi|71846440|gb|AAZ45936.1| two component transcriptional regulator, winged helix family
           [Dechloromonas aromatica RCB]
          Length = 221

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +         G +++   + E  E        D++ I+  L   G   L
Sbjct: 3   ILLVEDDTMLAESICEGLEKGGFTVDRLGAAEPAESALGLTHYDLAIIDIGLP--GMSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL R +R    QVP++ ++    L   +   D G DD + KP    E+LAR+ A+ RR L
Sbjct: 61  ELIRRVRLRGLQVPVLILTARDGLDDRISGLDLGADDYMVKPFQLPELLARMRALIRRSL 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G IR+    R     GE+  L  RE  IL+ LM      V K ++  ++  
Sbjct: 121 SAASSELAAGGIRLDLARRVATAHGEIMDLTGREWEILQQLMLASPNVVGKQKMAESL-S 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++  +  N VE +IS+LR+KL+       + + R +GY +D
Sbjct: 180 EWENEISANAVEIYISRLRQKLQGCGIE--IRTIRGIGYRLD 219


>gi|85705604|ref|ZP_01036702.1| DNA-binding response regulator [Roseovarius sp. 217]
 gi|85670029|gb|EAQ24892.1| DNA-binding response regulator [Roseovarius sp. 217]
          Length = 241

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D  +     +G+      +    +      + D+  ++  +   GE  L
Sbjct: 8   ILIVDDHREIRDALVKYLEKNGIRATSAANAVAMDVAMKEGQFDLIVLDVMMP--GEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +RA   +P++ ++        +   + G DD + KP + RE+LAR+ AI RR   
Sbjct: 66  SVCRRLRAQGGIPILMLTALGDETDRIVGLEVGADDYLPKPFNPRELLARIKAILRRSNR 125

Query: 122 SN--------NRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +         +R       + +D R      G    L   E R+L   +      +++ Q
Sbjct: 126 AEVVGGNLTGHRLAFDRWVLDTDRRTLTSADGADVALTTAEFRLLTVFLERPRFVLSREQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           +     G     V +  V++ IS+LR+K+         + +    GYS+
Sbjct: 186 LLDLTSGRA-AQVFDRTVDNQISRLRRKIEADPAKPALIATVWGGGYSL 233


>gi|123965391|ref|YP_001010472.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123199757|gb|ABM71365.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 260

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 88/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++         G  ++        + L      D+  ++  L       L
Sbjct: 5   ILLIEDDRDMRELVAGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR
Sbjct: 63  TLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRR 122

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +             GP+ +  +  +         L   E  +L  L+   G+ V+  
Sbjct: 123 TNRAQLNSTNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLLQRHGQTVSPA 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I   ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 183 LILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPTYIKTVYGAGYCLE 232


>gi|87122638|ref|ZP_01078515.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
 gi|86162096|gb|EAQ63384.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
          Length = 232

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L DD A + D     F  +G  +   +N +E  + L   +  D+  ++  +       
Sbjct: 4   LLLADDDARLSDLIKEYFSGEGYEVLHAWNGVEALDLLVKQS-PDLVILDVMMPE--LDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  ++IRA S+VP+I ++        +   + G DD ++KP + RE+LAR+ AI RR  
Sbjct: 61  FETLKLIRAKSKVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRAA 120

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                       +G + +    R   ++GE+  L   E  +LE +++  G+ + K ++  
Sbjct: 121 NDKEEDLATDLVSGNLLLQRKDRSVYLEGELIELTTSEYTLLECMLSLPGQVLTKQELSE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              G      +   ++ HIS LRKK+   +  +P + + R +GY  
Sbjct: 181 KALGRKLTMYD-RSLDMHISNLRKKVGTLINGEPRIKTVRGVGYIF 225


>gi|186683302|ref|YP_001866498.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465754|gb|ACC81555.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 241

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 101/239 (42%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +    D    ++     E           D+  ++  L       +
Sbjct: 3   ILVVEDDVQLAEMLMEALTDRQYVVDIAQDGEEAWDCIKVLEYDLVVLDITLP--KLDGV 60

Query: 62  ELPRIIRA-----------------HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
              + +R+                 +  +P++ ++   +L   +   D+G DD + KP  
Sbjct: 61  SFCQRLRSPMVGRSPSPTSRHTLSRNIAIPVLMLTARDTLGDKITGLDAGADDYMVKPFE 120

Query: 105 HREILARVAAIYRRLKVSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162
             E++ARV A+ RR   + + ++ G   +R+ S   +     +   L  +E  +LE +++
Sbjct: 121 MPELMARVRALLRRNSAATSSSDFGWGSLRLNSSTYEVTYADQPLHLTPKEFALLELMVS 180

Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +  + +++  I   I+ L D   EE  V+SHI  LR KL++     D +++   LGY +
Sbjct: 181 SGRRVLSRAGIIERIWSLDDPPSEE-TVKSHIKSLRYKLKDVGAADDFIETVHGLGYRL 238


>gi|262392644|ref|YP_003284498.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
 gi|262336238|gb|ACY50033.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
          Length = 239

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V             E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|228476733|ref|ZP_04061399.1| DNA-binding response regulator, OmpR family [Streptococcus
           salivarius SK126]
 gi|228251604|gb|EEK10705.1| DNA-binding response regulator, OmpR family [Streptococcus
           salivarius SK126]
          Length = 219

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD+  +    +        S+ G  S+  +    S  R D+  ++  +       L
Sbjct: 4   ILVIDDQEDIVQLVVKALELQNHSVTGLTSV-LDLDKNSLPRFDLILLDIMMPDV--DGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +    IR     P++ I+        +     G DD + KP   +E+ ARVAA  RR  +
Sbjct: 61  QFCHEIRNQVDCPILFITAKTQEADIVQGLTYGADDYICKPFGVKELQARVAAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +++   G I+     ++  V+ ++  L + E  I ++L  N+G+  +K QI++ +YG 
Sbjct: 121 ERHHKLLIGNIQFDLSAQELYVENQLLDLTKSEYSICQFLAENKGQVFSKVQIYTHLYG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++      V  HI  +R KL++ +G +P+++   +GY 
Sbjct: 180 YEDKGSPTAVAEHIKNIRAKLKD-VGQNPIETVWGIGYK 217


>gi|103487528|ref|YP_617089.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98977605|gb|ABF53756.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 236

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G     ++  E           D++  +  +       L
Sbjct: 5   IALVDDDRNILQSLSIALQAEGFVTRVYSDGEAALKPLIDNPPDLAVFDIKMPR--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  SQ+P+I ++              G DD + KP   R ++AR+ AI RR+++
Sbjct: 63  ELLRRLREKSQLPVIFLTSKDDEIDEALGLAMGADDYIAKPFSQRLVIARIRAILRRVEL 122

Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           +                 G + +          G+   L   E  ILE L +  G   ++
Sbjct: 123 NRAPPSEDDEPVAEPITRGRLTMDPARHKVSWDGKEVTLTVTEFLILETLASRPGIVRSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            Q+  A Y   D  +++  ++SHI +LR+K R    GFD + +    GY  
Sbjct: 183 NQLMDAAY-QDDVYIDDRTIDSHIKRLRRKFREVDPGFDAIATLYGAGYRF 232


>gi|320333683|ref|YP_004170394.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754972|gb|ADV66729.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 227

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+I+D   V+D         G+ +  F +        +SA   V  ++  L   GE  L
Sbjct: 4   IVVIEDEHTVRDVLRFHLERSGLRVSAFETAGAALDALASADALV--LDWMLP--GESGL 59

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              R +R  S +   P++ ++   +    ++  +SG DD + KP    E++ARV A+ RR
Sbjct: 60  SFLRRLRGDSDLRRLPVLMLTARAAEAERVEGLESGADDYLTKPFSAAELVARVRALLRR 119

Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +  + N  E GP+ +     +  ++G    L RRE  +L +L  NRG+   + ++   +
Sbjct: 120 TQTDAPNSIENGPLTIDVSAAEARLRGGRLNLTRREFDLLAFLALNRGRVYGRAELLDRV 179

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +G  D    E  V+ H+++LR  L  +      +++ R  GY +
Sbjct: 180 WGA-DFLGGERTVDQHVTQLRAHLGDDPQAPQFLETVRGKGYRM 222


>gi|292493049|ref|YP_003528488.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291581644|gb|ADE16101.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 219

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 108/222 (48%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  + LF   G +++    ++  + L ++  +    +   L   G   L
Sbjct: 3   LLLVEDNIALADELLPLFKGHGYAVDW--RVDGRDALLAAHDDPYDLVILDLGLPGLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +  RA    +P++ ++   +    L+   +G DD ++KP H  E+L RV A+ RR  
Sbjct: 61  QVLQRWRAEGLTLPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSH 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  + R E G + +  D +      + + L R E R+L   M + GK +++ Q+   +Y
Sbjct: 121 GAVNSPRLEVGGLALDEDRQSIWRGDQEYELTRGEFRLLRCFMLHPGKLLSRMQLNEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   + NV+E HI++LR+KL    G   ++++R  GY  
Sbjct: 181 DG-ESERDSNVLEVHINRLRRKL----GHQVIETRRGQGYRF 217


>gi|317404897|gb|EFV85265.1| two-component system [Achromobacter xylosoxidans C54]
          Length = 233

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 7/220 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +           G ++    +   +  +++  R D +     L+  G   L+
Sbjct: 5   LLVEDDPKLSRLIAQFLEQHGFNV--AQAYRGDHAVEAFRRHDPAITILDLMLPGRDGLQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---L 119
           + R +RA S  P++ ++        +   +SG DD V KP+  R +LAR+ A+ RR   L
Sbjct: 63  VCRDLRAFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHSQL 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +    R E GP+ +    R     G    L   E  +L  L +  G+ + +  + +A+ G
Sbjct: 123 EEPPERLEFGPLVIDRRTRAVVHGGVEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVRG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           + +    +  V+  +SKLR+KL +       + +    GY
Sbjct: 183 I-EFNGLDRSVDVCVSKLRRKLDDDPRDPARIKTVWGKGY 221


>gi|302873819|ref|YP_003842452.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689939|ref|ZP_07632385.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576676|gb|ADL50688.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 218

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   + +         G  S + F+ LE    L      D+  ++  L   G   
Sbjct: 5   ILIIEDEEAISNLIKINLTMAGYESRQVFDGLEALN-LLKEESFDLILMDIMLP--GMDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL + I     +P+I ++    L   ++   +G +D + KP    E+LAR+  + RR  
Sbjct: 62  FELMKRI-KDLNIPVIFLTAKNGLADKVNGLKAGAEDYIVKPFETVELLARIEVVLRRYS 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++N  E   ++++ D R  +   E   L  +E  ++  L+ N+   +++  +   I+G 
Sbjct: 121 KNSNCIEFKSLQIYEDKRIIKKDEETIELTLKEFELMLLLVKNKNIALSREYLLEKIWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++   E   +++HI K+RKKL      D + +   +GY ++
Sbjct: 180 YEYMGETRTIDTHIQKVRKKL---NIADNIKTVYKIGYRLE 217


>gi|148381290|ref|YP_001255831.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148290774|emb|CAL84908.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 230

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +    S   EE L     E  + I   ++       
Sbjct: 5   ILIVDDDKTIVEFLQIFLIKEGYDVRI--SYNGEEALDKIRSEQFNLILMDIMMPKLDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + IR  + +P+I ++   S Q  +  F SG DD + KP    E+  RV+AI +R+  
Sbjct: 63  EAIKRIRRLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           S      +  +   + +         +     L  +E  IL  L  N+G+    ++I+  
Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++G  +    +N + +HI  LR+KL + +     + +   +GY I+
Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIE 227


>gi|332828998|gb|EGK01669.1| hypothetical protein HMPREF9455_02050 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 233

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       ++G  ++   S E       + +  +  ++  +   G    
Sbjct: 10  ILIVDDEPDIREILQFNLQNEGYDIDLAESSEQA-AKMLTPKHRLILLDVMM--GGISGF 66

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +    +R   + +P+I ++   +    L  F  G DD ++KP   +E++ARV ++ +R +
Sbjct: 67  KFADQLRKDGNNIPIIFLTAKDTENDMLTGFSIGGDDYISKPFSIKEVVARVRSVLKRTE 126

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                   N      + +  D +   V  EV  L + E  IL  L+ N G+  ++T I  
Sbjct: 127 NQTSAAHKNVLTVNNLEIDFDTKTVSVDKEVIELTKTEFNILVLLVQNTGRIFSRTDILD 186

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +   D  V E  V+ HI++LRKK+      D + ++   GY+ +
Sbjct: 187 KAW-KDDGIVLERTVDVHIARLRKKIGAYG--DYIVNRTGYGYTFN 229


>gi|322516885|ref|ZP_08069784.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           vestibularis ATCC 49124]
 gi|322124585|gb|EFX96062.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           vestibularis ATCC 49124]
          Length = 219

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 99/219 (45%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD+  +    +         + G  S+  +    S  R D+  ++  +        
Sbjct: 4   ILVIDDQEDIVKLVVKALELQNHKVTGLTSV-LDLDKNSLPRFDLILLDIMMPDV--DGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +    IR     P++ I+        +     G DD + KP   +E+ ARVAA  RR  +
Sbjct: 61  QFCHEIRDQVDCPILFITAKTQEVDIVQGLTYGADDYICKPFGVKELQARVAAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +++   G  +     ++  V+ ++  L + E  I ++L  N+G+  +K QI++ +YG 
Sbjct: 121 ERHHKLSLGDFQFDLSAQELYVENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++      V  HI  +R KL++ +G +P+++   +GY 
Sbjct: 180 YEDKGSPTAVAEHIKNIRAKLKD-VGQNPIETVWGIGYK 217


>gi|218134956|ref|ZP_03463760.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990341|gb|EEC56352.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC
           43243]
          Length = 239

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 109/221 (49%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  ++     + +E L+    E+   I   L   G   +
Sbjct: 16  LLIVEDEKQICDMVAKSLYAAGYEVD--TCYDGKEALECILSENYDLIVLDLNLPGMDGM 73

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R ++    ++ +S    +   ++  D+G +D + KP H +E+ AR+ ++ RR  
Sbjct: 74  ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 133

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V N+   + G I+  +  R    + E   L R+E  ILEYL+ N G+ V++ ++   ++ 
Sbjct: 134 VQNDICLKCGEIKFDTIKRKAYAKEEPVLLTRKENGILEYLLINIGRPVSQEELIEHVWD 193

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++     +  H+S LRKKL+ KLG+DP+ +K   GY I
Sbjct: 194 ATADSF-SGAIRVHMSSLRKKLKAKLGYDPIQNKVGEGYKI 233


>gi|254411491|ref|ZP_05025268.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181992|gb|EDX76979.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 362

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +A        ++     E       +   D+  ++  L       +
Sbjct: 3   ILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPH--LDSI 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R +R      P++ +S   + Q  +   D+G DD + KP     + ARV A+ RR +
Sbjct: 61  SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S    + G + +     +    G+   L  +E  +L  LM++  +  ++  I   ++ 
Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F +      V++H+  LR+KL+     D +++    GY +
Sbjct: 180 TFGDPPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRL 220


>gi|170288334|ref|YP_001738572.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|170175837|gb|ACB08889.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 223

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 103/219 (47%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +  +++     E   ++  +   DV  ++  L        E
Sbjct: 4   LVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLSVH--DGWE 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +R +    P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR  +
Sbjct: 62  ILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSE 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + +   G + + +  +     G+   L ++E +ILEYL+ N+ + V K ++   ++  
Sbjct: 122 SKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLW-S 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD+ V  +V+ SHI  LRKK+        + + R +GY 
Sbjct: 181 FDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYV 219


>gi|282880384|ref|ZP_06289095.1| response regulator receiver domain protein [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305740|gb|EFA97789.1| response regulator receiver domain protein [Prevotella timonensis
           CRIS 5C-B1]
          Length = 231

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 101/228 (44%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G +++  NS E    ++ ++      +   ++       
Sbjct: 8   ILVVDDEQDLCEILKFNLETEGYAVDTANSAEEAMNMELTSYN---LLLLDVMMGAMSGF 64

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + ++  S    +P+I ++   +   T+  F+ G DD ++KP   RE+L R+ A+ RR
Sbjct: 65  AMAKKLKEESATAHIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRIRAVIRR 124

Query: 119 LKVSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              + N       +   + +  D +   V G+  P  + E  +L  L++ +G   ++ ++
Sbjct: 125 TAETENHEQPKVLKYQGLEMNLDRKTVTVDGKDVPFTKTEFELLHLLLSEKGHVFSRQEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              I+   D  V +  V+ +I++LRKK+        + ++   GY  D
Sbjct: 185 IDRIWPK-DVLVLDRTVDVNITRLRKKIGRF--SKCIVTRLGFGYYFD 229


>gi|126695485|ref|YP_001090371.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542528|gb|ABO16770.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 260

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++D         G  ++        + L      D+  ++  L       L
Sbjct: 5   ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR
Sbjct: 63  TLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRR 122

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +             GP+ +  +  +         L   E  +L  L+   G+ V+  
Sbjct: 123 TNRAQLNSSNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLLQRHGQTVSPA 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I   ++G ++   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 183 LILKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPIYIKTVYGAGYCLE 232


>gi|163867364|ref|YP_001608558.1| transcriptional regulator BatR [Bartonella tribocorum CIP 105476]
 gi|161017005|emb|CAK00563.1| transcriptional regulator BatR [Bartonella tribocorum CIP 105476]
          Length = 240

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +  +       +
Sbjct: 11  IVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPR--MDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 69  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVRAILRRSNA 128

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N    T          G + +  +      + +   L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPLSTGTASTSSLKRGDLVMDQERHTCTWKDKPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAAY-SDQVYVDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRF 237


>gi|123967682|ref|YP_001008540.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197792|gb|ABM69433.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 260

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++D         G  ++        + L      D+  ++  L       L
Sbjct: 5   ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR
Sbjct: 63  TLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRR 122

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +             GP+ +  +  +         L   E  +L  L+   G+ V+  
Sbjct: 123 TNRAQLNSSNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLLQRHGQTVSPA 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I   ++G ++   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 183 LILKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPIYIKTVYGAGYCLE 232


>gi|332283869|ref|YP_004415780.1| two-component response regulatory protein [Pusillimonas sp. T7-7]
 gi|330427822|gb|AEC19156.1| two-component response regulatory protein [Pusillimonas sp. T7-7]
          Length = 224

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +         + G +++     +      +    D+  ++  L   G   L+
Sbjct: 4   LVIEDDTTLGHALQEFLVEQGYAVDWLADGDQVLGAVAGQSYDLLLLDLNLP--GHSGLD 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
           +   +RA   QVP++ ++    ++  +   D+G DD V KP    E+ ARV A   RR  
Sbjct: 62  ILAKLRAEGEQVPVLILTARDGVEDRVAGLDAGADDYVTKPFDLTELAARVRAFGRRRTG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    E GP+   + GR+    GE   L  RE  +LE LMA  G+ V K QI +++   
Sbjct: 122 QAQPFIEAGPLLFDTVGREVRGNGERLSLSVREISVLEMLMARAGRVVTKRQIVNSL-SA 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +D    EN VE ++ +LRK+L        + + R  GY +D 
Sbjct: 181 WDADFSENAVEVYVYRLRKRLEGTGAS--IQTVRGFGYLLDV 220


>gi|134095106|ref|YP_001100181.1| osmolarity response regulator [Herminiimonas arsenicoxydans]
 gi|133739009|emb|CAL62057.1| Transcriptional regulatory protein OmpR [Herminiimonas
           arsenicoxydans]
          Length = 255

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 14/214 (6%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLI 76
              + G ++    S +    L    R D+  ++  L   GE  L + R +R A  + P+I
Sbjct: 38  YLSEQGFNVVTAESAQAMNKLWLRERYDLLVLDLMLP--GEDGLSICRRLRGAGDKTPII 95

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---------SNNRAE 127
            ++        +   + G DD + KP + RE++AR++A+ RR+           +     
Sbjct: 96  MLTAKGEDVDRIVGLEMGADDYIAKPFNPRELVARISAVLRRIGPDEAPGAPSETPQSFT 155

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G   +    R  +   E  PL   E  +L+    +  + +++ ++     G  +  V +
Sbjct: 156 FGEFTLDLGTRTLKKNDETVPLTTGEFSVLKVFARHARQPLSREKLMELARGR-EYEVFD 214

Query: 188 NVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             ++  IS+LRK +         + +   LGY  
Sbjct: 215 RSLDVQISRLRKLIEPDPSTPLYIQTVWGLGYVF 248


>gi|120401900|ref|YP_951729.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954718|gb|ABM11723.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 224

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 13/208 (6%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ--VPL 75
               DG+ +    +      L  S R DV+ ++  +   G   + L R +R      VP+
Sbjct: 17  YLERDGLEVCTAPNGSEALRLLGSRRIDVAVLDVMMP--GPDGIALCRNLRKGGDYSVPV 74

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR----AETGPI 131
           I ++     Q  +   ++G DD + KP   RE+  RV ++ RR   +         +G +
Sbjct: 75  ILLTALGEEQDRIAGLEAGADDYLTKPFSPRELALRVRSVLRRSPATGGVLPVDIRSGDL 134

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            V +  R   + G    L  RE  +L + + +      +  +   ++ L+D   + + V 
Sbjct: 135 TVTTASRTVTMAGTPVSLTNREFDLLLFFLTHPDTVFTREDLLKQVW-LWD-FGDLSTVT 192

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            H+ +LR KL ++     V +    GY 
Sbjct: 193 VHVKRLRSKLGDRH---RVQTVWGRGYM 217


>gi|117920171|ref|YP_869363.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117612503|gb|ABK47957.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 227

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++         D G  ++   + +   +  ++   DV+ ++  L  +    +
Sbjct: 6   ILVVEDDLILSHHLKVQLSDLGNQVQVALTAKEGFFQATNYPIDVAIVDLGLPDQ--DGI 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R    + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 64  SLIQQLREEGVKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +G +++    +   +  EV  +   E  ILEYLM +  + VAK ++   IYG
Sbjct: 124 GFVKPVITSGELKLDLAAKQVTLANEVMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 184 --DKEGDPNTIEVMVSRLRKKLTRDGIDNPIVTIRGQGYKFN 223


>gi|282878424|ref|ZP_06287210.1| response regulator receiver domain protein [Prevotella buccalis
           ATCC 35310]
 gi|281299410|gb|EFA91793.1| response regulator receiver domain protein [Prevotella buccalis
           ATCC 35310]
          Length = 231

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 101/229 (44%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +E  NS E E  +   +  ++  ++  +        
Sbjct: 8   ILVVDDEQDLCEILKFNLETEGYVVETANSAE-EAMMMDISSFNLLLLDVMM--GEMSGF 64

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + ++ + +    P+I ++   +   T+  F+ G DD ++KP   RE+L R+ A+ RR
Sbjct: 65  SMAKKLKENPKTASIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRIRAVIRR 124

Query: 119 LKVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +++  E        + +  D +   + GE  P  + E  +L   ++ +G   ++ ++
Sbjct: 125 TNETDDHTEPKTLKYQGLEMDLDKKTVTIDGENVPFTKTEFELLHLFLSEKGHVFSRQEL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
              I+   D  V +  V+ +I++LRKK+        + ++   GY  D 
Sbjct: 185 IDRIWPK-DVLVLDRTVDVNITRLRKKIGRF--SKCIVTRLGFGYYFDV 230


>gi|309812765|ref|ZP_07706504.1| response regulator MprA [Dermacoccus sp. Ellin185]
 gi|308433282|gb|EFP57175.1| response regulator MprA [Dermacoccus sp. Ellin185]
          Length = 209

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 9/208 (4%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLI 76
               +G  ++   +           + D   ++  L       LE+ R +R     +P++
Sbjct: 2   ALRYEGWDIKTAATGNSAVKTAKEFKPDAVVLDMMLPDF--DGLEVLRRMRDEDPALPVL 59

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGPIR 132
            ++   +++  +    +G DD V KP    E++ARV A+ RR     +   +    G + 
Sbjct: 60  FLTARDAVEDRVAGLTAGGDDYVTKPFSLEEVVARVRALLRRSVQLAEEETSLLTVGDLT 119

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           +  D  +    G    L   E  +L +LM N  + ++K QI   ++  +D   + NVVE 
Sbjct: 120 LDEDSHEVMRAGTEINLTATEFELLRFLMRNPKRVLSKAQILDRVW-HYDFGGQANVVEL 178

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +IS LRKK+ +      + + R  GY +
Sbjct: 179 YISYLRKKI-DAGREPMIHTMRGAGYVL 205


>gi|71908092|ref|YP_285679.1| heavy metal response regulator [Dechloromonas aromatica RCB]
 gi|71847713|gb|AAZ47209.1| Heavy metal response regulator [Dechloromonas aromatica RCB]
          Length = 223

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   D       + G   +   +         +   D+  ++  L   G    
Sbjct: 3   ILIVEDEAKTGDYLKQGLSEAGFGADLARNGLDGMHEGLAGEYDLLILDVNLP--GLDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA    +P++ ++    ++  +   + G DD + KP    E+LARV  + RR +
Sbjct: 61  QVLKALRAAGRDLPVLFLTARDQVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGR 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +    R     G+   L  +E  +LE  +  +G+ +A++ I S ++ 
Sbjct: 121 AKETGNLSIADLELDVLKRRAIRAGQRIDLTAKEFALLELFLRRQGEVLARSFIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NVVE  I +LR K+  +     + + R +GY ++
Sbjct: 181 M-NFDSDTNVVEVAIRRLRAKVDEEFTPKLIHTLRGMGYVME 221


>gi|113969921|ref|YP_733714.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114047157|ref|YP_737707.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113884605|gb|ABI38657.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113888599|gb|ABI42650.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 227

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++         D G  ++   + +   +  ++   DV+ ++  L  +    +
Sbjct: 6   ILVVEDDLILSHHLKVQLSDLGNQVQVALTAKEGFFQATNYPIDVAIVDLGLPDQ--DGI 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R    + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 64  SLIQQLREEGVKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +G +++    +   +  E+  +   E  ILEYLM +  + VAK ++   IYG
Sbjct: 124 GFVKPVITSGELKLDLAAKQVTLGNEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 184 --DKEGDPNTIEVMVSRLRKKLTRDGIDNPIATIRGQGYKFN 223


>gi|258538729|ref|YP_003173228.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|257150405|emb|CAR89377.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 226

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 13/224 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS----SAREDVSAIEAFLIGKGE 58
           + +DD   +       F      L  F  L  +    +    + + D+  ++  L     
Sbjct: 6   LAVDDDTAILAMLKRYFA---WRLPEFRLLTADAGQAALSQLAQQPDLILLDVNLPD--I 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               L   IRA + VP+I ++   + Q  +    +G DD V KP    E+ AR+ A  RR
Sbjct: 61  DGFTLTSRIRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRR 120

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +A+    G I +        V      L  ++ +++E+L  N G+  ++ Q++ 
Sbjct: 121 AHQPDKQAQIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+G +D   +E V+  HI ++RK         P+ +   +GY 
Sbjct: 181 KIWG-YDAQGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGYK 223


>gi|217973027|ref|YP_002357778.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304409091|ref|ZP_07390712.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307303094|ref|ZP_07582849.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|217498162|gb|ACK46355.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304352912|gb|EFM17309.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306913454|gb|EFN43876.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315267915|gb|ADT94768.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 224

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++         D G  ++   + +   +  ++   DV+ ++  L  +    +
Sbjct: 3   ILVVEDDPILSHHLKVQLSDLGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQ--DGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L   +R    + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLIEQLREAGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +G +++    +   +  E+  +   E  ILEYLM +  + VAK ++   IYG
Sbjct: 121 GFVKPVICSGELKLDLAAKQVTLSDEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 181 --DKEGDPNTIEVMVSRLRKKLTRDGIDNPIVTIRGQGYKFN 220


>gi|187777156|ref|ZP_02993629.1| hypothetical protein CLOSPO_00701 [Clostridium sporogenes ATCC
           15579]
 gi|187774084|gb|EDU37886.1| hypothetical protein CLOSPO_00701 [Clostridium sporogenes ATCC
           15579]
          Length = 233

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     ++F + G       S         + + D+  ++  +   G    
Sbjct: 7   ILVVEDDNDINKLLCSIFENKGYKSRAAFSGTEALMCVENEKWDMILLDLMIP--GLSGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+   IR  ++ P+I +S   S +T L+  + G DD + KP    E++ARV +  RR   
Sbjct: 65  EVILKIRKITKAPIIIVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVNSNLRRYLE 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  +N      I + ++ ++ +V   V  L  RE  +LE L+ N  K  +K  IF
Sbjct: 125 FSTDEENRSNILSYKEITLNTESKEVKVGQVVVTLTAREFAVLELLLTNPNKVYSKANIF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
            +I+G  +   E+N V  H+S+LR KL   N  G D +++   +GY +
Sbjct: 185 ESIWGE-EFLGEDNTVNVHVSRLRNKLSRANNNGEDYIETVWAMGYRL 231


>gi|145301037|ref|YP_001143878.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853809|gb|ABO92130.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|148292091|emb|CAN84664.1| transcriptional regulatory protein CpxR [Aeromonas salmonicida
           subsp. salmonicida]
          Length = 231

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      +   +G  +      + EE L   A +D + +   ++       
Sbjct: 4   ILLVDDDLELTQLLTEILTLEGFQVTVAE--DGEEGLLRLAEQDFNLVLLDVMMPRLNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P++ ++     Q  ++  ++G DD + KP   RE+LAR+ AI RR + 
Sbjct: 62  AMLAKLRETHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARIRAILRRTQS 121

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +               + +    +      ++  L   E  +LE L+ N G+ V+K+Q+ 
Sbjct: 122 AQPQRGGTSEEIRFMDLVLQPGLQQASSGEQLLELTATEFGLLECLLRNPGQIVSKSQLS 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
             + G   E  +   ++ H+S LRKKL     G     + R  GY
Sbjct: 182 ELVLGKKLEPFD-RAIDMHLSNLRKKLPERTDGQPRFKTVRGRGY 225


>gi|26990087|ref|NP_745512.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985016|gb|AAN68976.1|AE016529_7 DNA-binding response regulator CpxR [Pseudomonas putida KT2440]
          Length = 233

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 16/233 (6%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +L+DD   + +        +G      ++ E  E L  S    V  ++  L   G 
Sbjct: 1   MIPVLLVDDDRELTEMLSLYLAREGFQATAADTGEEGETLALSGHFQVVVLDVMLP--GI 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +E+ R +RA SQVP++ ++        +   + G DD V KP    E++AR+ AI RR
Sbjct: 59  SGIEVLRRVRARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRR 118

Query: 119 LKVS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           ++              +  +G ++++   R+         L   E  +LE L    G+ V
Sbjct: 119 VQPYLMGETSAPEVPEQVRSGALKMWPGRREARWGAATLELTGSEFSLLEALARQAGQLV 178

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +K  +     G      +   ++ H+S +R+KL     G   + S R +GY +
Sbjct: 179 SKQDLSLNALGRPLTRYDRR-IDVHVSSIRQKLGPRADGSSWIQSVRGMGYML 230


>gi|324999596|ref|ZP_08120708.1| response regulator receiver protein [Pseudonocardia sp. P1]
          Length = 229

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   I    + G +++   +           R D+  ++  L        
Sbjct: 4   ILIVEDDPGIRGALIRGLSERGHAVDSAPTAMAGLESAVGTRPDLVVLDLGLPD--MDGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            + R++R  S VP+I  +        +   D+G DD + KP    ++ AR+ A+ RRL  
Sbjct: 62  TMLRMLRGASSVPVIVATARDDESEIVAVLDAGADDYLVKPFAAAQLDARIRAVLRRLGD 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G + V    R   + G    L  RE  +L YL A   + V+K ++ + ++ 
Sbjct: 122 GTPDPTVVVGGLSVDPRSRRAHLDGGELELTPREFDLLHYLAARADQVVSKRELVTEVWQ 181

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
                  +  V+ H+S LR+KL         + S R +G  +
Sbjct: 182 QP-YGGADKTVDVHLSWLRRKLGETAQAARYLHSVRGVGVRL 222


>gi|238924384|ref|YP_002937900.1| response regulator [Eubacterium rectale ATCC 33656]
 gi|238876059|gb|ACR75766.1| response regulator [Eubacterium rectale ATCC 33656]
          Length = 257

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 112/221 (50%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G  ++     + +E L+    E+   I   L   G   +
Sbjct: 34  LLIVEDEKQICDMVAKSLYAAGYEVD--TCYDGKEALECILSENYDLIVLDLNLPGMDGM 91

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R ++    ++ +S    +   ++  D+G +D + KP H +E+ AR+ ++ RR  
Sbjct: 92  ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 151

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V N+   + G I+  +  R+   +GE  PL R+E  ILEYL+ N G+ V++ ++   ++ 
Sbjct: 152 VQNDICLKCGEIKFDTIKREAYAKGEPVPLTRKENGILEYLLINIGRPVSQEELIEHVWD 211

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++     +  H+S LRKKL+ +LG+DP+ +K   GY I
Sbjct: 212 ATADSF-SGAIRVHMSSLRKKLKAELGYDPILNKVGEGYKI 251


>gi|268680656|ref|YP_003305087.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
 gi|268618687|gb|ACZ13052.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
          Length = 224

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 96/223 (43%), Gaps = 4/223 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++  S+E  ++ E   +L      D+  ++  + G    V 
Sbjct: 3   ILIVEDDEGIASFLKQGLEEELFSVELCDNGEDALYLAQMNPYDMIILDLMIKGVQGDV- 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P+I +S   ++   +     G DD + KP    E+LAR+    R+  
Sbjct: 62  -VCQKLREQKLHTPIIVLSAKSTISDKVGLLHLGADDYLTKPFSFEELLARIHVQLRKQN 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 +   + +    +      EV  L  +E  +LEYLM ++G  + +  +   ++  
Sbjct: 121 DKEPLLKVADLELNPVTKSVTRSKEVISLTAKEYMLLEYLMRHKGAIIEEKMLEEQLF-S 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++++  N+V  ++ +LR K+        + + R LGY+++ N
Sbjct: 180 SEQSINSNMVSVYMYRLRSKIDKNFELKLIKTHRNLGYTLNEN 222


>gi|332968048|gb|EGK07135.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 240

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD   + +    L   +G S ++     +    L      D+  ++  L       
Sbjct: 6   ILLVDDEEGLLEMIRLLLEREGYSRIDTATKGQQARDLIDQNDYDLIVLDVMLPD--GSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +L + IR  S+VP++ ++   +    L  F  G DD V KP H  E++AR+ A+ RR  
Sbjct: 64  FDLCQEIRKTSKVPILFLTSRTADMDILVGFGYGGDDYVTKPFHALELVARIKALLRRHR 123

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +      + G  +V     + +V+G+      RE ++L +   +       ++
Sbjct: 124 YFQEQLAQQQPEVLDYGDFQVIRSAGELQVKGKPVDCSAREFQLLLFFCDHPHHIFNVSE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           ++  ++   +   EE  V  HIS+LRKK+         + + R LGY  
Sbjct: 184 LYEKVWKQ-EAIGEEKTVVMHISRLRKKIEQNPKQPRFLINVRGLGYKF 231


>gi|323692686|ref|ZP_08106915.1| two-component system response regulator [Clostridium symbiosum
           WAL-14673]
 gi|323503240|gb|EGB19073.1| two-component system response regulator [Clostridium symbiosum
           WAL-14673]
          Length = 236

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +  DD   +++    L   +G  + E  N  E  E  +S    D+  ++  +   G+  
Sbjct: 10  ILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVE--KSGGSVDLIILDVMMP--GKSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +     IR    VP++ ++           F +G DD + KP  + E++ARV A+ RR  
Sbjct: 66  ILACLEIRKKLTVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYY 125

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   K  + + +   + +  D R+  ++G    L   E RIL  L  NRGK     
Sbjct: 126 VYQGGGNRKEDDAQIQIRDLLLNKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQ 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+ +++      +  N V  HI  LRKKL  +      + +    GY I+
Sbjct: 186 NIYESVWEEPYYYISNNTVMVHIRNLRKKLEKDPKNPKYIVNVWGKGYRIE 236


>gi|269959749|ref|ZP_06174128.1| transcriptional regulator [Vibrio harveyi 1DA3]
 gi|269835503|gb|EEZ89583.1| transcriptional regulator [Vibrio harveyi 1DA3]
          Length = 220

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 103/223 (46%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E  +     +      + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECLHVERISDVEPQWKKADLVILDRQLPD-GDSVQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            LP   +    +P+I ++   +++  +   DSG +D + KP    E+ AR+ A  R    
Sbjct: 62  SLP-EWKKIKDIPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQLRAPDS 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + ++  T  + +    R+   +GE+  L R E  +L +L +N G+   + ++   +
Sbjct: 121 AEQGNADKVMTKDLEIDRATREVVFKGEMITLTRTEFDLLLFLASNLGRVFTRDELLDHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 WG-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 218


>gi|182419726|ref|ZP_02950967.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237665523|ref|ZP_04525511.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376463|gb|EDT74044.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237658470|gb|EEP56022.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 223

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  L +     +  D G   +E  N  E  +        D+  ++  +       
Sbjct: 5   ILIAEDDNLFRSLVCDIITDQGYIPIEARNGQEAIDKFFDLGNIDLVILDVMMPV--YDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR HS +P+I ++     +  L  F+ G D+ + KP  +   +AR+  I +++K
Sbjct: 63  FEVLKEIREHSDIPIIMLTALGDEKHELLGFNKGADEYIGKPFSYEVFIARLNNIAKKIK 122

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G I +          G    L  +E  +L Y + N  K + + QI ++++G
Sbjct: 123 HDTEKEITYGKIIINQSNHKVISNGLEIKLNHKEYTLLIYFIKNSSKVLTREQILNSVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   +   +++HI  LR KL  K     + + R  GY I+ 
Sbjct: 183 -YDFDGDIRTIDTHIKTLRAKL--KTEGTYIKTVRGCGYMIEV 222


>gi|156976951|ref|YP_001447857.1| positive response regulator for pho regulon [Vibrio harveyi ATCC
           BAA-1116]
 gi|156528545|gb|ABU73630.1| hypothetical protein VIBHAR_05736 [Vibrio harveyi ATCC BAA-1116]
          Length = 220

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 103/223 (46%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E  +     +      + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECLHVERISDVEPQWKKADLVILDRQLPD-GDSVQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            LP   +    VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  R    
Sbjct: 62  SLP-EWKKIKDVPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQLRAPDA 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + ++  T  + +    R+   +GE+  L R E  +L +L +N G+   + ++   +
Sbjct: 121 AEQGNADKVMTKDLEIDRATREVVFKGEMITLTRTEFDLLLFLASNLGRVFTRDELLDHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 WG-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 218


>gi|121601666|ref|YP_989580.1| transcriptional regulatory protein BvrR [Bartonella bacilliformis
           KC583]
 gi|12830428|emb|CAC29081.1| putative regulatory protein [Bartonella bacilliformis]
 gi|120613843|gb|ABM44444.1| transcriptional regulatory protein BvrR [Bartonella bacilliformis
           KC583]
          Length = 240

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 86/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E + +        +     ++  +  +       +
Sbjct: 11  IVLVDDDRNILTSLSFALETEGYRVESYTNGVSALKSLTLHPPHLAIFDIKMPR--MDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 69  ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRFNA 128

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N    T          G + +  +      +     L   E  IL+ L    G   ++ 
Sbjct: 129 RNQPVPTGVSPTSSFKRGDLIMDQERHTCTWKDRPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAAYN-DQVYVDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRF 237


>gi|309783437|ref|ZP_07678143.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
 gi|308917836|gb|EFP63527.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
          Length = 206

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 90/187 (48%), Gaps = 6/187 (3%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVD 96
           L  S   D+  ++  L        ++ + +RA    VP++ ++   S+   +   + G D
Sbjct: 17  LAMSGDYDLLLLDVMLPDV--DGWQIVQSLRAAEQAVPVLFLTARDSVADRVKGLEMGAD 74

Query: 97  DVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154
           D + KP    E+LARV  + RR    VS++R +   + +    R     G+  PL  +E 
Sbjct: 75  DYLVKPFAFAELLARVRTLLRRGTGAVSSDRIQVADLVLDLARRRASRGGQKIPLTSKEF 134

Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214
            +LE L+  RG+ + ++ I S ++ + +   + NV++  I +LR K+ +      + + R
Sbjct: 135 SLLELLVRRRGEVLPRSLIASQVWDM-NFDSDTNVIDVAIRRLRAKIDDHFEPKLIQTVR 193

Query: 215 FLGYSID 221
            +GY ++
Sbjct: 194 GMGYVLE 200


>gi|288869907|ref|ZP_06112229.2| DNA-binding response regulator RegX3 [Clostridium hathewayi DSM
           13479]
 gi|288869159|gb|EFD01458.1| DNA-binding response regulator RegX3 [Clostridium hathewayi DSM
           13479]
          Length = 233

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 87/220 (39%), Gaps = 3/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D   +    + L   +G ++    + E         + D++ I+  L        
Sbjct: 9   ICLVEDDREIAKNLVLLLRSEGFAVTHAPTREEAFAAAEEHKFDLALIDIALPD--GNGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   I+    +P+I ++      + +   + G DD + KP   RE++AR+ A  R+   
Sbjct: 67  TVYTKIKETQDIPVIFLTASGDETSVVTGLNMGADDYITKPFRPRELIARIGAALRKNGR 126

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                E   + V   G   +  G    L   E R+L   + N    + + ++   ++   
Sbjct: 127 LGAVFEICGLFVDVAGGVVKKNGSEVFLSALEYRLLLVFVNNPRSIITRGRLLDELWDAA 186

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            E V +N +  +I +LR+K+ +       + + R  GY +
Sbjct: 187 GEYVNDNTLTVYIKRLREKIEDDPANPQIILTVRGTGYRL 226


>gi|260776875|ref|ZP_05885769.1| DNA-binding response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606541|gb|EEX32815.1| DNA-binding response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 232

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D     F   G  ++   + +        +  DV   +  +       L
Sbjct: 3   LLLVEDNQEQADFLRQSFSQSGHQIDVVENGKLGLISVMQSDYDVIITDRMMPEV--DGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR+   + P++ +S   S++  ++   +G DD + KP    E+LARV  +  R  
Sbjct: 61  QMVKAIRSSGKETPILILSALDSVEERVNGLRNGCDDYLVKPFAFSELLARVELLALRAN 120

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++++ +        + +    R  +    V     RE +IL+YLM N G+ + +  +  
Sbjct: 121 SNSDKTDSQVLVIDDLELDLLSRQAKRGDTVISFNNREFQILQYLMNNAGRVITRAMLLE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  F    + NV++ HIS+LRKK+        + + R  GY +
Sbjct: 181 KVW-SFSFDPQTNVIDVHISRLRKKIDLDGHTPLLHTVRGAGYIL 224


>gi|238925300|ref|YP_002938817.1| two-component response regulator [Eubacterium rectale ATCC 33656]
 gi|238876976|gb|ACR76683.1| two-component response regulator [Eubacterium rectale ATCC 33656]
 gi|291524406|emb|CBK89993.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291527577|emb|CBK93163.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 229

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   +          DG  +    +    E L      DV  +   ++      +E
Sbjct: 5   LVCDDEKDIVSAISIYLTSDGYEV--IPARNGLEALDIVKHNDVHLVLMDIMMPVMDGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR  S VP+I ++        +     G DD V KP +  E+ ARV +  RR    
Sbjct: 63  AMVEIRKISNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNPVELQARVKSQIRRYMLL 122

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S  +   G I +    +   V GE   L R E  IL+ LM + G+  +  QI++ 
Sbjct: 123 GAGNTSAGKLVIGGIELDDKSKTVTVDGEAANLTRTEYDILKLLMEHPGEVYSPNQIYAK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++   +    EN V  HI  LR+K+  N      +      GY ID
Sbjct: 183 VW-KDEPYGTENTVAVHIRHLREKVEINPAEPRYLKVIWGRGYKID 227


>gi|168185490|ref|ZP_02620125.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
           botulinum C str. Eklund]
 gi|169296516|gb|EDS78649.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
           botulinum C str. Eklund]
          Length = 220

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            + IDD   + +   +    +G ++           +++L    + D+  ++  +     
Sbjct: 4   ILAIDDEEGILNIIKSALEKEGHNVTTISNPTCFSKDKYL----KHDLILLDVMMPE--I 57

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               L R IR     P+I ++     Q  +     G DD ++KP    E+ ARVAA  RR
Sbjct: 58  DGFSLCRQIRNLVDCPIIFLTAKTMEQDIVMGLSLGGDDYISKPFGISELRARVAAHLRR 117

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +   N      ++     ++     ++ P  + E  I E L  N G+  +K +I+  +
Sbjct: 118 EHREKQNAFCVSDVKFNITSKEAYYNEKLVPFTKSEYSICECLAINHGQVFSKERIYEKV 177

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G++  +    +VE HI  +R KL++ +G +P+++   +GY 
Sbjct: 178 FGVYGNSDTTAIVE-HIKNIRSKLKS-IGINPIETVWGIGYK 217


>gi|168178171|ref|ZP_02612835.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182671139|gb|EDT83113.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLP--GMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N  +   I +  D R+  +  +   L  RE  IL+ LM    K   K+ +F +
Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++       ++N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VWSSK-YLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229


>gi|302554583|ref|ZP_07306925.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472201|gb|EFL35294.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 228

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE----DVSAIEAFLIGKG 57
            +L++D   V     A+    G  +    S   EE LQ+   E     V  ++  L  + 
Sbjct: 3   LLLVEDDNHVAAALSAVLARHGFDVTHARS--GEEALQALVPESDCFGVVLLDLGLPDQ- 59

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ R
Sbjct: 60  -DGYEVCGKIRKRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSR 118

Query: 118 RLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R    +           GP+ +    R   V G V  L R+E  +L  L    G    + 
Sbjct: 119 RTSHEDTSSGIETELRLGPVHIELPTRRVSVDGAVIQLTRKEFDLLALLAQRPGVVFRRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI S ++    E      +E H++ LR KLR       +++ R +GY +
Sbjct: 179 QIISEVWRTSWEGTG-RTLEVHVASLRAKLRMPA---LIETVRGVGYRL 223


>gi|255523826|ref|ZP_05390791.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512529|gb|EET88804.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 230

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G  ++  ++         +   ++  ++  L  K     
Sbjct: 5   ILIIEDDLEICSLLKEFLEESGYDIKVSHTGIDGMRELRTLNYNLVLLDLMLPFK--SGD 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R+ S +P+I +S    + T +D    G DD V KP    E+LAR+ +  RR K 
Sbjct: 63  EILRELRSFSDIPVIILSAKDMVHTKVDLLRLGADDYVTKPFDLNEVLARIESNLRRCKS 122

Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +             I +  + +   V G    L  +E  IL  L+++  K  +K  +F
Sbjct: 123 DTSSTIEKEPILTYKDITLNEEEKKVVVNGNTLVLTSKEYGILLLLLSHPQKVFSKANLF 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            +I+   +   E+N +  HIS +R KL++     + +++   +GY +
Sbjct: 183 ESIW-KEEYFSEDNTLNVHISNIRNKLKSANPNEEYIETIWGMGYKL 228


>gi|257784884|ref|YP_003180101.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473391|gb|ACV51510.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 223

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++   + L   +G   +   S E       +A  D+  ++  L   G    
Sbjct: 4   ILVVEDDHQIQQELVLLLQRNGFEAQALTSFEAVPQQIIAAHPDLVLLDLNLP--GIDGQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +R  S VP+I ++   +    L     G DD + KP + + +L  + ++ RR   
Sbjct: 62  QICREVRQLSNVPIIVVTSRNTDLDELMVLSLGADDFIAKPYNTQILLMHITSVLRRTNS 121

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +  +     + + S         +   L + E RIL  LM N G  V++ +I   ++
Sbjct: 122 DVTTGAQLSHAGVTLDSSSCKVSANQKSVELTKNELRILSLLMQNAGTVVSRQRIQEELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              DE V++N +  +IS LR  L +    D V ++R LGY I+
Sbjct: 182 -QSDEFVDDNTLTVNISHLRNTLASIGVEDFVMTRRGLGYVIE 223


>gi|196233947|ref|ZP_03132784.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196221996|gb|EDY16529.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 223

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 88/225 (39%), Gaps = 11/225 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D A ++ G       +G  +           +    R D+  ++  L   G+   +L R
Sbjct: 2   EDDAHIRLGLCDALRGEGYEVSDCRDGAQALPIIRQRRPDLVVLDIMLP--GKSGFDLCR 59

Query: 66  IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123
            +RA     P++ +S        +   + G DD V KP   RE+LARV A+ RR      
Sbjct: 60  ELRAEKNCTPILMLSAKGQEVDKVVGLELGADDYVTKPFSLRELLARVQALLRRATPGAV 119

Query: 124 -----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + V           E F L  RE ++L  L   RG  V++  I + ++
Sbjct: 120 AADVPEEISFGKVHVDCRALRGTRGKEAFELTPRELKVLAVLHRERGNAVSRETILTEVW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           G+ D       ++  + KLR+K+         + +   LGY +D 
Sbjct: 180 GI-DYYGTTRTLDQLVVKLRQKIEATPGEPQHLLTVHGLGYRLDV 223


>gi|126700337|ref|YP_001089234.1| two-component response regulator [Clostridium difficile 630]
 gi|254976316|ref|ZP_05272788.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093701|ref|ZP_05323179.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255101892|ref|ZP_05330869.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307761|ref|ZP_05351932.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255315453|ref|ZP_05357036.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518116|ref|ZP_05385792.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651233|ref|ZP_05398135.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684297|ref|YP_003215582.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687956|ref|YP_003219090.1| two-component response regulator [Clostridium difficile R20291]
 gi|115251774|emb|CAJ69609.1| Two-component response regulator [Clostridium difficile]
 gi|260210460|emb|CBA64917.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213973|emb|CBE06070.1| two-component response regulator [Clostridium difficile R20291]
          Length = 234

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++    L   +G  +    + E    L  S   D+  ++  +  K     
Sbjct: 9   ILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDST-IDLIILDVVMPVK--TGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  +  P++ ++        +  F +G DD ++KP  + E+++RV ++ RR   
Sbjct: 66  VACNEIREKTTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRRYYI 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   N  +T  + V  D +D  + GE   L   E  IL  ++ NR K  +   +
Sbjct: 126 YQGKEKEREPNILKTKELCVNLDTQDVTLNGEPVFLTTIEYSILILMLKNRKKVFSSENL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  I+         N +  HI  LRKKL  ++     + +    GY ID
Sbjct: 186 YETIWDEQYFYTANNTIMVHIRNLRKKLEKDQKNPQYIKTAWGKGYYID 234


>gi|55820941|ref|YP_139383.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55736926|gb|AAV60568.1| response regulator (homolog to spaR Bsu & DvnR Cdi) [Streptococcus
           thermophilus LMG 18311]
          Length = 219

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 100/219 (45%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD+  +    +        ++ G  S+  +    S  R D+  ++  +       L
Sbjct: 4   ILVIDDQKDIVQLVVKALELQNHNVTGLTSV-LDLDKNSLPRFDLILLDIMMPDV--DGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +    IR     P++ I+        +     G DD + KP   +E+ ARVAA  RR  +
Sbjct: 61  QFCHEIRNQVDCPILFITAKTQEADIVQGLSYGADDYICKPFGIKELQARVAAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +++   G  +     ++  ++ ++  L + E  I ++L  N+G+  +K QI++ +YG 
Sbjct: 121 ERHHKLSLGEFQFDLSAQELYIENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++      V  HI  +R KL+  +G +P+++   +GY 
Sbjct: 180 YEDKGSPAAVAEHIKNIRAKLKE-VGQNPIETVWGIGYK 217


>gi|329936036|ref|ZP_08285836.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329304514|gb|EGG48392.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 249

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 29/244 (11%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   ++         +G  +                  DV  ++  +   G   L+
Sbjct: 6   LLAEDDRAIRHALERALTLEGYEVTAVADGVEALAHAHRTPPDVLLLDVMMP--GIDGLQ 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R++RA     P++ ++        +   D+G DD V KP    E+ AR+ A+ RR   
Sbjct: 64  VCRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTGN 123

Query: 120 -----------------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156
                                  +    +     +R+    R          L R E  +
Sbjct: 124 AGYGGAPAAPAAPGSARPAGPAERGGGGQLAVAGLRMDVQARRAWRGERELELTRTEFDL 183

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216
           LE L  N G  +  T I+  I+G +D       +  ++  LR+KL        + + R +
Sbjct: 184 LELLARNSGIVLDHTTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDAPGAPALIHTVRGV 242

Query: 217 GYSI 220
           GY +
Sbjct: 243 GYVL 246


>gi|327443814|gb|EGE90468.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
          Length = 768

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 80/211 (37%), Gaps = 6/211 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + +    +   +G S  G         +    R  +  ++  L   G   +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLMLP--GRDGI 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---R 118
            + + IR  S VP+I ++        +    +G DD V KP    E++AR+ A  R    
Sbjct: 68  RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +        G + +       ++ GE   L   E  +L  +     +  ++  +   ++
Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP 209
           G +    +  +V  H+ +LR K+       P
Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPP 217


>gi|294013097|ref|YP_003546557.1| CheY-like response regulator [Sphingobium japonicum UT26S]
 gi|292676427|dbj|BAI97945.1| CheY-like response regulator [Sphingobium japonicum UT26S]
          Length = 239

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++      G +G  +    +        ++   D+  ++  +   GE  L
Sbjct: 7   LLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARVRLNANAIDLVILDIMMP--GEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S++P+I ++        +   + G DD V KP   RE++AR+  I+RR+  
Sbjct: 65  SLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRRVAT 124

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              R            G +    +    + +G   PL   E  ++        + +++ Q
Sbjct: 125 GGQRVTAPDGATYAFAGWLLKTQERTLVDGEGVALPLSTAEYNLMLAFATRPNQVLSRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   I    +    +  +++ IS+LRKK+  +      + +    GY++
Sbjct: 185 LLD-ITQGREANAFDRAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTL 232


>gi|255281457|ref|ZP_05346012.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
 gi|255267945|gb|EET61150.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
          Length = 232

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D A + DG       +G  ++   S+    + L    + D+  ++  L       
Sbjct: 4   ILLLEDDANLIDGLQYSLKKNGFEVDTVRSVHAAMQRLADMGKYDLLLLDVTLPD--GSG 61

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            E+   +R  + ++P+I ++        +   D G DD + KP    E+ +R+ A+ RR 
Sbjct: 62  FEVCGYVREKNPRIPIIFLTAADEEVNIIRGLDLGGDDYITKPFKLGELCSRIRALLRRA 121

Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            ++ +  +T    G I V   G    + G    L   E R+L  L+ N  + V +  I +
Sbjct: 122 GIAESSGDTALVCGDITVDLLGSRVLLGGVNLELTGAEYRLLCLLVRNANRIVTRETILN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            ++    + V++N +  ++ +LR+K+  +      + + R  GY
Sbjct: 182 ELWDGTGDYVDDNTLSVYVRRLREKVEKEPSRPQHLITVRGFGY 225


>gi|116333023|ref|YP_794550.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098370|gb|ABJ63519.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 230

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    + L      +   F+  E  E+L S    D   ++  L   GE  L+
Sbjct: 8   LVVEDEKALSADIVELIEPICETTTAFD-GEQGEFLASQGVFDAIILDLMLP--GESGLD 64

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           L   IR    + P++ ++   ++   L  F+ G DD V KP H  E+LAR+ A+ +R   
Sbjct: 65  LLLHIRNQGVKTPVLILTAKDTIADKLRGFNDGADDYVTKPFHREELLARMKALLKRTGH 124

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S++    G + + +        G    L  RE  +L YL+ N G  + K QIF+ ++G
Sbjct: 125 LNSSDTIALGQLEINTSKHLATFNGAPLTLKGREFDLLAYLVGNPGTIITKEQIFNRLWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FD     +VVE ++S LRK+L++      + + R  GY ++
Sbjct: 185 -FDSETSLSVVEVYMSNLRKELKHAGSDLSLRTIRNAGYIVE 225


>gi|46201698|ref|ZP_00208213.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 225

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G   + F +         SA    + ++  L       L
Sbjct: 3   ILLVEDNDRLAEFISGALKSAGFVPDVFGNKADAIAAFESATYQAAILDLGLPD--GDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R  RA S   P++ ++    +   +   ++G DD + KP    E++AR+ AI RR  
Sbjct: 61  DIIRAQRAKSAPCPMMVLTARDGVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPG 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +       +   + GR+  V G +  +PRRE  +LE+L+   GK V+K  +   +YG
Sbjct: 121 AALSVELSLSNLTFDTTGREVRVDGTLISMPRREMEMLEHLLRRAGKVVSKRSLEEGLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            FD+ V  N VE  +S+LRK+L+       V + R +GY +
Sbjct: 181 -FDDDVTPNSVEVLVSRLRKRLQQTGARLTVHTLRGIGYML 220


>gi|15600078|ref|NP_253572.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107103984|ref|ZP_01367902.1| hypothetical protein PaerPA_01005057 [Pseudomonas aeruginosa PACS2]
 gi|218893980|ref|YP_002442849.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
 gi|254238396|ref|ZP_04931719.1| two-component response regulator [Pseudomonas aeruginosa C3719]
 gi|254244220|ref|ZP_04937542.1| two-component response regulator [Pseudomonas aeruginosa 2192]
 gi|296391722|ref|ZP_06881197.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
 gi|313109881|ref|ZP_07795813.1| two-component response regulator [Pseudomonas aeruginosa 39016]
 gi|9951159|gb|AAG08270.1|AE004901_12 two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|126170327|gb|EAZ55838.1| two-component response regulator [Pseudomonas aeruginosa C3719]
 gi|126197598|gb|EAZ61661.1| two-component response regulator [Pseudomonas aeruginosa 2192]
 gi|218774208|emb|CAW30025.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
 gi|310882315|gb|EFQ40909.1| two-component response regulator [Pseudomonas aeruginosa 39016]
          Length = 229

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +      G+ G +++         +L    R D+  ++  L   G    
Sbjct: 3   ILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-----IY 116
           ++  ++R    VP++ ++    LQ  +   + G DD + KP    E+L R+       + 
Sbjct: 61  QIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVV 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R       + +   +++    R    QG+V  L  +E  +L  LM   G+ +++T I S 
Sbjct: 121 R----EAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASE 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +   + NVV+  I +LR K+ N      + + R +GY  +
Sbjct: 177 VWDM-NFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCE 220


>gi|296169659|ref|ZP_06851277.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895656|gb|EFG75352.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 236

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 21  DDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLI 76
           + G+ L GF    +++  E L+S+      AI   +       + +   +RA  + VP+ 
Sbjct: 27  ERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 86

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIR 132
            +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+     GP+ 
Sbjct: 87  VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPLE 146

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+ 
Sbjct: 147 VDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVDV 205

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I  LR+KL    G   + + R +G+ +
Sbjct: 206 FIGYLRRKLEANGGPRLLHTVRGVGFVL 233


>gi|77460156|ref|YP_349663.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384159|gb|ABA75672.1| two-component system response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 226

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 7/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ +D  L+  G +A     G+++E  N+      +   A  DV  ++  L  +    L 
Sbjct: 4   LVCEDDELIASGIVAGLTAQGLTVEHVNTASKARAILKVAEFDVMVLDLGLPDEDGLKLL 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
                    ++P++ ++   S+   +D   SG DD + KP   RE+ AR+  + RR    
Sbjct: 64  QQLRQ-QGLEIPVLILTARDSVTDRVDGLQSGADDYLLKPFDLRELFARLQTLLRRVAGR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S N  E G +      R+  + G    L RRE+ +L+ L+ NRG+ ++  Q+  ++YG  
Sbjct: 123 SVNLIEHGALTYDPSSRETTLAGRPVDLSRREQSLLQALLHNRGRVLSTEQLKDSVYGFN 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           DE +E N +  HI  LR KL    G   V++ R LGY +
Sbjct: 183 DE-LESNALNVHIHHLRSKL----GKGIVETVRGLGYRL 216


>gi|315640045|ref|ZP_07895170.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315484173|gb|EFU74644.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 224

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A+++              E F S +F+E  +    +    +   +        
Sbjct: 4   IMIVEDEAVIRQLISEELQK--WQFETFGSTDFQEVFEDFQSQAPQLVLLDINLPVFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              + IR  S VP+I IS   +    +   + G DD V KP     ++A++ A+ RR   
Sbjct: 62  YWCQKIREVSNVPIIFISSRNTNMDMIMAMNMGGDDFVTKPFELDVLVAKINALLRRSYN 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             K +        + +  +    E+ G +  L + E R+L  LM N GK +++ ++  A+
Sbjct: 122 YVKGTQETFTHNGLVLNVENSSVEINGTLVDLSKNEYRLLFILMKNHGKILSREKLLRAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +  V++N +  +I++LR+K+      + +++K   GY I
Sbjct: 182 WD-DERFVDDNTLTVNINRLRRKIEQAGVQNYIETKVGQGYII 223


>gi|183984600|ref|YP_001852891.1| two-component response transcriptional regulatory protein PrrA
           [Mycobacterium marinum M]
 gi|183177926|gb|ACC43036.1| two-component response transcriptional regulatory protein PrrA
           [Mycobacterium marinum M]
          Length = 236

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 21  DDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLI 76
           + G+ L GF    +++  E L+S+      AI   +       + +   +RA  + VP+ 
Sbjct: 27  ERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 86

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIR 132
            +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+     GP+ 
Sbjct: 87  VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPLE 146

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+ 
Sbjct: 147 VDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVDV 205

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I  LR+KL    G   + + R +G+ +
Sbjct: 206 FIGYLRRKLEANGGPRLLHTVRGVGFVL 233


>gi|152985885|ref|YP_001350928.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150961043|gb|ABR83068.1| two-component response regulator [Pseudomonas aeruginosa PA7]
          Length = 229

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 97/225 (43%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A   +      G+ G +++         +L    R D+  ++  L   G    
Sbjct: 3   ILVVEDDAKTGEYLKKGLGESGYAVDWSRHGADGLYLALENRYDLVVLDVMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-----IY 116
           ++  ++R    VP++ ++    LQ  +   + G DD + KP    E+L R+       + 
Sbjct: 61  QIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVV 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R       + +   + +    R    QG++  L  +E  +L  LM   G+ +++T I S 
Sbjct: 121 R----EAEQVQLADLHLDVLRRKVSRQGQLIALTNKEFALLHLLMRREGEVLSRTLIASE 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +   + NVV+  I +LR K+ N      + + R +GY  +
Sbjct: 177 VWDM-NFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCE 220


>gi|330824770|ref|YP_004388073.1| two component heavy metal response transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|329310142|gb|AEB84557.1| two component heavy metal response transcriptional regulator,
           winged helix family [Alicycliphilus denitrificans K601]
          Length = 227

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G   +          +      D+  ++  L   G    
Sbjct: 3   ILIVEDEPKTGEYLRQGLSEAGYVADLVPHGTDGLHMALHGAYDLVILDVMLP--GLNGW 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R    Q+P++ ++    ++  +   + G DD + KP    E+LARV  I RR  
Sbjct: 61  QVLQSLRERGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRAP 120

Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             N         + +    R     G    L  +E  +LE LM   G+ + ++ I S ++
Sbjct: 121 AGNEAMVLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            + +   + NV+E  + +LR K+        + + R +GY +D 
Sbjct: 181 DM-NFDSDTNVIEVAMRRLRMKIDEGHPIKLIQTVRGMGYVLDV 223


>gi|227328970|ref|ZP_03832994.1| DNA-binding heavy metal response regulator [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 230

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D             + G +++   + +  + L  + + D  A+   ++  G+   
Sbjct: 3   LLLVEDEEKTSSYIYRALSELGYTVDV--AADGIDGLHLAVQYDYDAVILDVMLPGKDGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +R H Q P++ +S   S+   +     G DD ++KP    E++AR+ A+ RR   
Sbjct: 61  AVLEGLRLHKQTPVLMLSARGSVDERVKGLRHGADDYLSKPFSLIELVARIQALLRRRLS 120

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V   +     + +    R     G+   L  +E  +L  L  ++G+ ++K  I   ++
Sbjct: 121 DGVDVTQLHIDDMHLDLLARRVTRAGQRLDLTAKEFALLSLLARHQGEILSKMMIAEQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NVVE  + +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDANVVEVAVKRLRAKVDAPYTVKLLHTVRGMGYVLE 222


>gi|91224990|ref|ZP_01260249.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
 gi|269965884|ref|ZP_06179977.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
 gi|91190236|gb|EAS76506.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
 gi|269829437|gb|EEZ83678.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
          Length = 239

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V             E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVMNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|306825660|ref|ZP_07458999.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432021|gb|EFM34998.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 218

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G   E   + + EE L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGISDYLADCGY--ETIQAADGEEALEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+   +  +E  IL+YL+ N G+ + ++QI  A++ + 
Sbjct: 121 TGRIFSYKDTKVDFESYSASIAGQEIAINAKELEILDYLVKNEGRALTRSQIIDAVWKVT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLD----LDCILTVRNVGYKLE 216


>gi|134296468|ref|YP_001120203.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139625|gb|ABO55368.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 232

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 104/225 (46%), Gaps = 12/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEKV 60
           VLI+D   ++    A   +DG+++  F++   ++ L  +A  + D+  ++  L       
Sbjct: 9   VLIEDEKQIRRFVRAALEEDGIAV--FDAETGKQGLIDAATRKPDLVIVDLGLPDT--DG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++ R +R  S+VP+I +S        +   D+G DD + KP    E+ AR+ A  RR  
Sbjct: 65  LDVIRELRGWSEVPVIVLSARTQEDEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRN 124

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 + +   G + V    R     GE+  L   E R+L  L+ + G+ +   Q+   
Sbjct: 125 QGGASESPKVAFGGVSVDLALRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRD 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           ++G        + +  +++ LR+KL R+    + + ++  +GY +
Sbjct: 185 VWGPSHVE-SHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|126174714|ref|YP_001050863.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|153001013|ref|YP_001366694.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160875726|ref|YP_001555042.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|125997919|gb|ABN61994.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151365631|gb|ABS08631.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160861248|gb|ABX49782.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
          Length = 227

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++         D G  ++   + +   +  ++   DV+ ++  L  +    +
Sbjct: 6   ILVVEDDPILSHHLKVQLSDLGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQ--DGI 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L   +R    + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 64  SLIEQLREAGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 123

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +G +++    +   +  E+  +   E  ILEYLM +  + VAK ++   IYG
Sbjct: 124 GFVKPVICSGELKLDLAAKQVTLSDEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 184 --DKEGDPNTIEVMVSRLRKKLTRDGIDNPIVTIRGQGYKFN 223


>gi|315647351|ref|ZP_07900464.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277553|gb|EFU40882.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 230

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 100/226 (44%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYI-ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +++     L  +  ++LE  N  E   +++  A  D+  ++  L     + 
Sbjct: 4   ILVVDDEPNIREVLASYLLKEHYLTLEAANGSEALGYMRKQA-VDLVILDLMLPD--MEG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + IR  S VP++ ++   +  + +  F +G DD + KP   RE++AR+ A+ RR  
Sbjct: 61  ERVCQEIRTFSSVPIMMLTAKVTQSSRIGGFAAGADDYIVKPFDPREVMARIKAVLRRGD 120

Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S   A+      G + + S   +    G+V  L   E ++L  L     +  ++ ++  
Sbjct: 121 DSKLLADVIVYHQGRLVINSLKHEVTCDGQVINLTPSEYKLLLLLAKYPQRNFSREELVD 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            + G  D   +  +++ HI  LR+K+  +      + +    GY  
Sbjct: 181 RVLGC-DFIGDIRIIDQHIKNLRQKIEPDSRQPQYIITVYGFGYRF 225


>gi|237803521|ref|ZP_04591106.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025503|gb|EGI05559.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 282

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           S+   DV  ++  L   GE  L 
Sbjct: 56  LIVDDDVAIRELLCDYLTRFNINARGVTDGAQMRQALSNETFDVVVLDLMLP--GEDGLS 113

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 114 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 173

Query: 123 NN----RAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +           R+ S  R      G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 174 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 233

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL  +      + + R  GY  D
Sbjct: 234 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 277


>gi|257791382|ref|YP_003181988.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257475279|gb|ACV55599.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 232

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 85/235 (36%), Gaps = 26/235 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             + DD   + D    L  + G     F +       Q+    D+  ++  +   G    
Sbjct: 7   IAVCDDEQAIADLVGQLLVEAGFVPTVFYAAPDLLACQADDPFDLVILDIMMP--GMDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------- 108
              R +R  S VP+I ++        +  F+ G DD V KP   RE+             
Sbjct: 65  ACCRELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRRATS 124

Query: 109 --LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166
             +AR        +      E   I +        + GE   L  +E  IL  LM ++ +
Sbjct: 125 NDVAR--------EDGPGMLECCGIALDESAYTATLHGEALSLTPKEFAILACLMRDQSR 176

Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            VA   +F  ++G    A   N V  HI  LRKKL       + V++   +GY +
Sbjct: 177 PVASRDLFETVWGEIANAQSNNTVMVHIRHLRKKLAAVDSSQEFVETVWGVGYKL 231


>gi|148553326|ref|YP_001260908.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148498516|gb|ABQ66770.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 235

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G ++  ++  E           D++ ++  +       +
Sbjct: 5   IALVDDDRNILTSVSIALQSEGFTVRVYSDGESALKALLDNPPDLAVLDIKMPR--MDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P I ++              G DD + KP   R ++AR+ AI RR +V
Sbjct: 63  ELLRRLREKSSIPTIFLTSKDDELDEALGLAMGADDYITKPFSQRLLIARIRAILRRTEV 122

Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                         +   G + +       +  G+   L   E  ILE L    G   ++
Sbjct: 123 RATPEDEADATPVEKIVRGRLEMDPARHRVQWDGKDVTLTVTEFLILEALAQRPGFVKSR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            Q+    Y   D  V++  ++SHI +LR+K R     F  +++   +GY  
Sbjct: 183 DQLMDTAY-QDDVYVDDRTIDSHIKRLRRKFRQVDPEFKAIETLYGVGYRF 232


>gi|28896928|ref|NP_796533.1| osmolarity response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837894|ref|ZP_01990561.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
 gi|260365885|ref|ZP_05778379.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260877828|ref|ZP_05890183.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260895523|ref|ZP_05904019.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902547|ref|ZP_05910942.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28805136|dbj|BAC58417.1| transcriptional regulator OmpR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748757|gb|EDM59602.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
 gi|308088470|gb|EFO38165.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308090000|gb|EFO39695.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308109666|gb|EFO47206.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308113446|gb|EFO50986.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|328471703|gb|EGF42580.1| osmolarity response regulator [Vibrio parahaemolyticus 10329]
          Length = 239

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           V             E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 VELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKSLVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L +       + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232


>gi|172058889|ref|YP_001815349.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991410|gb|ACB62332.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 230

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 92/226 (40%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D   ++   +      G  + E  N  E  ++ +     D+  ++  +       
Sbjct: 4   ILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQT-FDILLLDIMMPEV--DG 60

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             +    R+  +V  +I ++     +  +     G DD + KP    E+LAR+ ++ RR+
Sbjct: 61  FAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +       +GP R+    +  +  G    +   E  +L + + N  + +++ ++ 
Sbjct: 121 ETLRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
            A++G  +   +   V+ +I +LR+K+  N      +++    GY 
Sbjct: 181 DAVWGE-NYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYK 225


>gi|310657554|ref|YP_003935275.1| DNA-binding response regulator [Clostridium sticklandii DSM 519]
 gi|308824332|emb|CBH20370.1| DNA-binding response regulator [Clostridium sticklandii]
          Length = 228

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 99/227 (43%), Gaps = 9/227 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +++D   ++         +G  +    S E    L  +A  D+      ++  G    E+
Sbjct: 2   VLEDEYAIRSFVTLNLKREGYEVIEAESGEQAIEL-YNANPDIKVAILDVMLPGIDGFEV 60

Query: 64  PRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            + +R  + Q+ +I ++     Q  +   + G DD ++KP    E++AR+ ++ RRL  +
Sbjct: 61  LKYLREKNPQMGVIMLTARTHEQDKVLGLEYGADDYISKPFSPTELVARIRSLIRRLTSN 120

Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +  ++GP  +    R      E   L  +E  ILE  + N  K +++ QI + I
Sbjct: 121 HIEEKQDVLKSGPFTLNLSDRKFYKGDEEIELTPKEFEILELFLKNAKKSLSRDQILNEI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223
           +G  +   +  VV+ ++ ++RKK+  +      + +    GY  + +
Sbjct: 181 WGK-NYFGDLKVVDVNMRRIRKKIEDDPAEPRFLKTVWGYGYRWEED 226


>gi|229131521|ref|ZP_04260411.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228651936|gb|EEL07883.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 223

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 84/220 (38%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       +    E L+   ++D   I   ++       
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFC--MKATSGLEALELIEQKDFDIILLDVMMPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V GE   L   E  +L   + N+ +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYGERISLTPIEFSLLGLFLQNKNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
              +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 QTDIEYRTIDSHIRNIRDKLRKKEFPVEDYLETVYKVGYK 219


>gi|188590225|ref|YP_001921389.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188500506|gb|ACD53642.1| putative lantibiotic biosynthesis regulatory protein [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 220

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   + +        +G  +   ++     + Q + + D+  ++  +        
Sbjct: 4   ILAIDDEIGILNIIKVALEKEGHIVTTVSNANKISYNQYT-KYDLILLDVMMPE--IDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L   IR     P++ ++     +  +     G DD + KP    E+ ARV A  RR  +
Sbjct: 61  TLCSEIRNLVDCPILFLTAKTMEEDIVKGLSFGGDDYITKPFGISELRARVNAHLRRECR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N      ++ + + ++     E+ P  + E  I EYL  N G+  +K QI+ +I+G 
Sbjct: 121 EKQNAFYISELKFYINAKEVYHDDELVPFTKSEYNICEYLALNHGQVFSKEQIYESIFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD   +   +  HI  +R KL+ K+G + +++   +GY 
Sbjct: 180 FDGHSDTTAIVEHIKNIRSKLK-KIGINTIETVWGIGYK 217


>gi|237716432|ref|ZP_04546913.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262408032|ref|ZP_06084580.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294643327|ref|ZP_06721151.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CC 2a]
 gi|294806113|ref|ZP_06764966.1| putative transcriptional activator protein Irlr [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444079|gb|EEO49870.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262354840|gb|EEZ03932.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292641333|gb|EFF59527.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CC 2a]
 gi|294446701|gb|EFG15315.1| putative transcriptional activator protein Irlr [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 228

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V    +    ++G              L  +   D+   +  L        
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLP--KMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR  +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R+ 
Sbjct: 62  ELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVT 121

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            +R+    +D E  G    L  +E  +L Y++ N  + +++ +I   
Sbjct: 122 GNAQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIAEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++         N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 182 VWNTH-FDTGTNFIDVYINYLRKKIDRDFEPKLIHTKAGMGFIL 224


>gi|307825786|ref|ZP_07656002.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307733094|gb|EFO03955.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 228

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +   +      DG +++  +  E    L  S    +  ++  L     K  
Sbjct: 4   ILIIDDDVELAGLFKDYLEQDGFAVDVTHQGESGRRLALSGDYQLVILDIMLPD--IKGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+   IR  S++P++  +        +   +SG DD V KP   RE+ AR+ AI RR + 
Sbjct: 62  EVLMRIRMESRIPVLMFTARGDDVDRIIGLESGADDYVPKPCTPRELAARIRAILRRTQS 121

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V N     GP++++S+ R      +   L   E  +LE L  N G+ V K ++   
Sbjct: 122 VSDAVGNGPIVAGPLKIWSEKRKASWFDQDMDLTSTEFNLLETLAMNVGRIVTKNELSEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             G    A  +  ++ H+S +R+KL     G   + + R  GY +
Sbjct: 182 ALGRP-LARFDRSIDVHMSSIRQKLGCQNDGRSYIQTVRGQGYQL 225


>gi|258538863|ref|YP_003173362.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|257150539|emb|CAR89511.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 231

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +  I  F  D    E   +     +L      D   ++  L        
Sbjct: 7   ILVIEDDPDLNES-IVDFVRDFSQPEAALTGADGLYLAEEGIFDAIVLDIMLPE--LNGF 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +RA   + P++ ++   +L   +  F+ G DD + KP H  E++ R+ A+ +R  
Sbjct: 64  DLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRTG 123

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    GP  V  +  +  +  +   L  +E  +L YL+ N+   + K QIF  ++
Sbjct: 124 HFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRLW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD     +VVE ++S LRKKL+       + + R +GY  
Sbjct: 184 G-FDSDTAVSVVEVYMSNLRKKLKPMQADVWIKTIRNVGYIF 224


>gi|229005054|ref|ZP_04162778.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228756156|gb|EEM05477.1| Two-component response regulator [Bacillus mycoides Rock1-4]
          Length = 238

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G S+      +         + D++ I+  +        
Sbjct: 5   ILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPN--INGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL +I+R   ++P+I +S        +     G DD ++KP    E+LAR+ A  RR   
Sbjct: 63  ELIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYD 122

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L    ++     + +       + +G    L   E ++L+  M   G+   K QI
Sbjct: 123 FNTDLLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           F  ++       ++N +   IS+LR+K+ +       + + R LGY  
Sbjct: 183 FENVWSDH-YYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRF 229


>gi|212712531|ref|ZP_03320659.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM
           30120]
 gi|212684747|gb|EEB44275.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM
           30120]
          Length = 232

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 16/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +L+DD   +      L   +G ++    + + E+ LQ   +  D+  ++  +  K    
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFNV--VIAYDGEQALQQIDSSIDLLLLDVMMPKK--NG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ A+ RR  
Sbjct: 60  IETLKELRQIHQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSN 119

Query: 121 VSNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            S             +   +++    ++     E+  L   E  +L  L  + G+ V++ 
Sbjct: 120 WSEQTQGDNSNTPTLQVDKLQLNPGRQEASFDNEILDLTGTEFTLLYLLAQHLGQVVSRE 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
            +   + G      +   ++ HIS LR+KL     G     + R  GY
Sbjct: 180 HLSQEVLGKRLTPFD-RAIDMHISNLRRKLPERTDGQPWFKTLRGRGY 226


>gi|116691688|ref|YP_837221.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116649688|gb|ABK10328.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
          Length = 221

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +     +     G +++          L    R D+  ++A L   G    
Sbjct: 3   ILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLP--GMDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR  
Sbjct: 61  TVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N+    G + +    R  E+  +   L R+E  +LE L +   +  +K ++ + ++ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDSQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +E    N VE +++++RKKL+       + + R +GY I
Sbjct: 181 FGNEPT-ANAVEQYVTRVRKKLQ--GSSVEIRTARGMGYQI 218


>gi|251778066|ref|ZP_04820986.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082381|gb|EES48271.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 229

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 90/224 (40%), Gaps = 15/224 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + DG      + G ++  F +    E L     E +      ++      ++
Sbjct: 7   LIVEDEKEICDGIAIYLNNQGYNV--FKAHNGIEGLDIINNETIHLAIVDIMMPKMDGIQ 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           +   +R+    P+I +S        +   + G DD + KP +  E+LARV +  RR    
Sbjct: 65  MTMKLRSKFDFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQLRRYSKY 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  +  NN      + + ++ ++  V  E   L   E +IL  L+ N G+  +  +
Sbjct: 125 LNVINNLEEKNNNFIIDGLELNAETKEVFVDEESVKLTPIEFKILHLLIKNPGRVFSADE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRF 215
           I+  ++   + AV  + V  H+  +R+K+  +      +     
Sbjct: 185 IYEKVWN--ENAVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWG 226


>gi|225575180|ref|ZP_03783790.1| hypothetical protein RUMHYD_03269 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037588|gb|EEG47834.1| hypothetical protein RUMHYD_03269 [Blautia hydrogenotrophica DSM
           10507]
          Length = 238

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 9/221 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + +++DD   + D         G  +++ F S E  EW Q  A  D+  ++  L      
Sbjct: 22  VILVVDDEKKINDLISMNLEMVGHRAIQAFTSKEALEWNQR-AELDLVLLDIMLPE--LD 78

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             EL        QVP+I ++   SL   +     G DD V KP    E+LARV  + RR 
Sbjct: 79  GYELLPYF-MKKQVPVIYLTAKDSLMDKVKGLKLGADDYVTKPFESIELLARVETVLRRC 137

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + V    R          L  +E  +LE L+ N    +++ Q+    +G
Sbjct: 138 GRQEKEFCLGEVTVNFAQRKVFRGQNPVELTAQEFALLEVLIRNCNLALSREQLLEQAWG 197

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    E   V+ HI +LRKKL  +     +++    GY +
Sbjct: 198 -YVYEGETRTVDIHIQRLRKKLGWEKE---IETVYKYGYRL 234


>gi|161950137|ref|YP_402695.2| transcriptional regulatory protein YedW [Shigella dysenteriae
           Sd197]
 gi|309786827|ref|ZP_07681444.1| transcriptional activator protein irlR [Shigella dysenteriae 1617]
 gi|308925313|gb|EFP70803.1| transcriptional activator protein irlR [Shigella dysenteriae 1617]
          Length = 216

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 95/204 (46%), Gaps = 3/204 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D    ++       + G  ++  +  +  + L  + ++D + I   ++  G    
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R   Q P+I ++   S+   +   DSG +D + KP    E+LARV A  R+   
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  E   +R+ S  +          L R+E ++L  L +  G+ + +T I S I+G+ 
Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL 205
           +   + N V+  I +LR K+ +  
Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPF 203


>gi|119492324|ref|ZP_01623671.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119453209|gb|EAW34376.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 233

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++            +E     E           D+  ++  L        
Sbjct: 6   ILVVDDDPAIRNLIARYLSQQDYEVESAKDGETALECFDQFSPDLVVLDVNLPDT--TGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L + +++ + V ++ ++        +  FD G DD + KP    E+ ARV AI +R + 
Sbjct: 64  ILCQEMQSRTSVFILLLTSLTGEADKIKGFDKGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      G + +    R+  +  ++ PL   E  +L  L +  G+   ++++   +
Sbjct: 124 VADSEPRSLVYGDLLIDPSRREVYIDDKLIPLSALEFDLLYCLASKPGRAWRRSELLQEV 183

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221
           +  +D   E+ VV+ HI ++RKK+   +     + + R +GY  D
Sbjct: 184 WD-YDYEGEQRVVDVHIGQIRKKVEPDVNKPVLIKTIRGVGYMFD 227


>gi|150388841|ref|YP_001318890.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948703|gb|ABR47231.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 231

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            ++++D    +             +           L S+ ++ D   ++ FL       
Sbjct: 6   ILVVEDDPTTQRLIRHTLEQHQFQVLSAEDGAMTLDLLSNHKDIDAIILDLFLPDC--NG 63

Query: 61  LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           LEL + +R+HS    +P++ ++        +   + G DD + KP H RE++AR+    R
Sbjct: 64  LELLKTVRSHSIHSDIPVVILTSNDDKLDLVIALEMGADDYITKPFHKRELIARINVCLR 123

Query: 118 RL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R     +  N       I +    R+ +    +  L   E  +L   + + GK  ++  +
Sbjct: 124 RAQNTIRSHNTSRSISGITLDITTREVKKDDGLISLTFAEFELLLLFVTHPGKVFSRDDL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + ++G      E  V++ HIS LRKKL +      +++ R +GY +
Sbjct: 184 LTKLWGES-FVSETRVIDMHISSLRKKLDDS-DNQLIETIRGVGYRL 228


>gi|226948065|ref|YP_002803156.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842279|gb|ACO84945.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLP--GMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N  +   I +  D R+  +  +   L  RE  IL+ LM    K   K+ +F +
Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIYNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VW-SSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229


>gi|149912107|ref|ZP_01900695.1| putative DNA-binding response regulator [Moritella sp. PE36]
 gi|149804813|gb|EDM64853.1| putative DNA-binding response regulator [Moritella sp. PE36]
          Length = 237

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +K+         G S+      +  + + ++   D+  ++  +   G+   
Sbjct: 7   ILVVDDDVEIKELLSEYLDQAGFSVLTAGEGKEMQRVLATNTPDLIVLDVMMP--GDDGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + IR  SQVP+I ++        +   + G DD + KP   RE+LAR+ A+ RR   
Sbjct: 65  TLCQKIRRTSQVPIIMLTANSDEADRIVGLEIGADDYMAKPFSPRELLARIKALLRRSSY 124

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQI 173
           +      G   +F+  +   +  ++          L   E  +L+  + N  + +++  +
Sbjct: 125 TKPTQ--GRYFIFAHWKLDTLTRQLINQHDNATTELSGSEFNMLKLFVTNPNQVLSRDAL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
             A  G  +    E  ++  +S+LR+KL +       + + R  GY +
Sbjct: 183 SDATRGR-EALPLERGIDIQLSRLRQKLGDNSKSPTLIKTIRGRGYVL 229


>gi|159900549|ref|YP_001546796.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893588|gb|ABX06668.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 248

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +              L   ++      +       +  I+  +        
Sbjct: 21  ILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVMMPY--IDGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IRA S VP+I I+        +  F+ G DD + KP    E+ ARV AI RR++ 
Sbjct: 79  TVTERIRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVEG 138

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +R        G + +        + GE   L   E  +L +L AN G+   +  +F  
Sbjct: 139 YQHRKASPIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDREVLFRE 198

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           ++G ++   + N+V+  + +LR+K+  +      + + R +GY +
Sbjct: 199 VWG-YEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKL 242


>gi|121611277|ref|YP_999084.1| osmolarity response regulator [Verminephrobacter eiseniae EF01-2]
 gi|121555917|gb|ABM60066.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 243

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++D        +G  +      +    L      D+  ++  +   GE  L 
Sbjct: 12  LVVDDDARIRDLLHRYLTQEGFDVMAAEDGKALNRLLLRETVDIIVLDLMMP--GEDGLS 69

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA +   P+I ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 70  ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPA 129

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N     GP       R  +  GE   L   E  +L+ L+ +  + +++ +
Sbjct: 130 QEAPGAPSGDNEVVTFGPFVFDLGTRALQRNGEELVLTTGEFAMLKALVRHPRQPLSREK 189

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G  +    +  ++  +S+LRK +  +      + +   +GY  
Sbjct: 190 LALLARGR-EFEPFDRSLDVQVSRLRKMVEADAAAPRYIQTVWGVGYVF 237


>gi|90411444|ref|ZP_01219455.1| probable two-component system response regulator (Pho family)
           [Photobacterium profundum 3TCK]
 gi|90327657|gb|EAS44000.1| probable two-component system response regulator (Pho family)
           [Photobacterium profundum 3TCK]
          Length = 225

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +       F +    +      +    L +    D+  ++  L       +
Sbjct: 3   ILVIEDDPHISGFLKQGFEELQYQVTCCGDGKQGYQLATMELYDLIVLDLMLPTW--DGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR    Q+P++ +S   S++  +    SG DD + KP    E+ AR   + RR  
Sbjct: 61  EVLRRIRGEGHQIPILILSARHSVEERVLGLQSGADDYLVKPFAFAELAARCQILSRRQV 120

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           VS+  N+     + +    R     G    L +RE  +++  +    +  +KT I   I+
Sbjct: 121 VSHNANQLSYHDLTLDLLTRKLCRDGHDILLKQREFALMQLFIQQPERVFSKTVILENIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G F    + NVV+  + +LR ++        + + R +GY + +
Sbjct: 181 G-FQFDPQTNVVDVLVCRLRAQVDKGFEMPLIHTIRGVGYVLKY 223


>gi|82701839|ref|YP_411405.1| two component transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82409904|gb|ABB74013.1| two component transcriptional regulator, winged helix family
           [Nitrosospira multiformis ATCC 25196]
          Length = 233

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G S++          L  + + D   ++  L   G   +
Sbjct: 9   ILIIEDDRAIASNLYDFLEARGHSVDAAADGITGLHLAVTQQFDGILLDLGLP--GADGI 66

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L R +R  AH   P++ ++   +L+  L  FD G DD + KP   +E+ AR+ A+++R 
Sbjct: 67  TLCRKLRQEAHLDTPVLMLTARDTLEDKLKGFDCGADDYLVKPFALKEVEARLVAMHKRR 126

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             KV++   ET  +            G    LP +   +L  +M+  G+  ++ ++ S +
Sbjct: 127 KGKVTSRTLETEDLSFDPKTLTIRFAGANVKLPPKCIGLLAVIMSEPGRVFSRRELESEV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G   E  +   + SH+ +LR+ L    G+DP+++   LGY +
Sbjct: 187 WGDVQETSD--TLRSHMHELRRALTRAGGYDPIETVHGLGYRL 227


>gi|21223763|ref|NP_629542.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256785143|ref|ZP_05523574.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289769037|ref|ZP_06528415.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|6808396|emb|CAB70633.1| probable two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289699236|gb|EFD66665.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G +++  +              D+  ++  L   G    
Sbjct: 3   LLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGLEGLHRAGEGVYDLVILDIMLP--GLNGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA    VP++ ++         +  D+G DD + KP  +  ++ARV A+ RR  
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G +RV +  R   +  +   L  +E  +LE L+   G+ V+K +I   +
Sbjct: 121 QGAGASPVHVHGDLRVDTAARRVFLGEDEATLTAKEFAVLEQLVVRAGQVVSKAEILEHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  F    + N+VE ++S LR+KLR  L    + + R  GY ++
Sbjct: 181 WD-FAYDGDPNIVEVYVSALRRKLRAGL----IRTVRGAGYRLE 219


>gi|294670817|ref|ZP_06735673.1| hypothetical protein NEIELOOT_02520 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307304|gb|EFE48547.1| hypothetical protein NEIELOOT_02520 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 225

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD AL+ +        +G+ +      E       S + DV  +++ +       L+
Sbjct: 5   LLVDDDALLTELLTEYLTAEGLEVRSVPDGEAGVQEILSGQYDVVVLDSMMP--KMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + + +RA S +P+I ++        +   + G DD V KP   RE+LAR+ AI RR +  
Sbjct: 63  VLKTVRAQSSIPIIMLTAKGDDIDRIIGLEMGADDYVPKPSTPRELLARINAILRRAQNQ 122

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI--- 173
                ++N      + ++   R   +      L   E  +LE LM + G+ V+K  +   
Sbjct: 123 HDQGNASNSLSVSNVTLYPSKRQATIGDGPLELTSTEFNLLEVLMRHAGQVVSKETLSIE 182

Query: 174 -FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-----RSIDVHISSIRHKLGDA---SLIQTVRGLGYLFVKN 225


>gi|269797462|ref|YP_003311362.1| transcriptional regulator [Veillonella parvula DSM 2008]
 gi|282849136|ref|ZP_06258521.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
 gi|313893989|ref|ZP_07827555.1| sensory transduction protein RegX3 [Veillonella sp. oral taxon 158
           str. F0412]
 gi|269094091|gb|ACZ24082.1| two component transcriptional regulator, winged helix family
           [Veillonella parvula DSM 2008]
 gi|282580840|gb|EFB86238.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
 gi|313441553|gb|EFR59979.1| sensory transduction protein RegX3 [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 229

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 94/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +         G  +    +         +   D+  ++  L        
Sbjct: 5   ILIIEDDLDIANIERDYLMVAGYDVTIMTNGTDGIEAALNTPVDLIILDVMLPE--MDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117
           E+ R IR   +VP++ ++        +     G DD + KP     ++A++ A+      
Sbjct: 63  EVCRQIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYKR 122

Query: 118 ---RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
              R  +  N  ++G IR+        V  +   L ++E ++LE+LM NR    +K +++
Sbjct: 123 LTERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           S ++GL D   +   V  HI++LR+++ +       + +   +GY  
Sbjct: 183 SRVWGL-DSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGYKF 228


>gi|226349583|ref|YP_002776697.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226245498|dbj|BAH55845.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 224

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +        DG +++  +              DV  ++  L   G+   +
Sbjct: 4   LLVEDETRLAETVRRGLVADGCTVQVEHDGVAGLAAAVGGGFDVVVLDIMLP--GKHGYD 61

Query: 63  LPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + R   R     P++ +S         D FD G DD + KP     ++AR+ A+ RR   
Sbjct: 62  VVREMRRQQVWTPVLMLSAKDGEYDLADAFDLGADDYLIKPFSFVVLIARLRALVRRGAP 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                     + +    R          L  RE  +LE+LM + G  V K  I  A++  
Sbjct: 122 PRPPVLSVAGLSLDPAMRRVTRGETRLQLTPREYSVLEFLMRHAGSVVTKHDILQAVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +   ++N+VE +I  LR+K+    G   +D+ R +GYS+
Sbjct: 182 -NYEGDDNIVEVYIGYLRRKIDAPFGTTSIDTVRGVGYSM 220


>gi|53711500|ref|YP_097492.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|253564441|ref|ZP_04841898.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|52214365|dbj|BAD46958.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|251948217|gb|EES88499.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|301161228|emb|CBW20766.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis 638R]
          Length = 228

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V D   A   ++G +     + +    L+         + + ++       
Sbjct: 4   ILIIEDEQRVADLLRAGLEENGYNC--LVAYDGAMGLRMFRANTFDLVISDIVLPKMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL + IRA +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELCKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRKL 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + V    +  +  G    L  +E  +L Y++ N  K V++  I   
Sbjct: 122 AVVTDVEEELNYADLSVNLLDKSVKRAGRDIKLSPKEYNLLVYMIENAEKVVSRMDIADK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++         N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 182 VWNTH-FDTGTNFIDVYINYLRKKIDRDFDTKLIHTKTGMGFIL 224


>gi|15643165|ref|NP_228209.1| response regulator [Thermotoga maritima MSB8]
 gi|4980903|gb|AAD35484.1|AE001719_10 response regulator [Thermotoga maritima MSB8]
          Length = 225

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 101/219 (46%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + D        +  +++     E   ++  +   DV  ++  L        E
Sbjct: 6   LVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVH--DGWE 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           + + +R      P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR  +
Sbjct: 64  ILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSE 123

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             + +   G + + +  +      +   L ++E +ILEYL+ N+ + V K ++   ++  
Sbjct: 124 SKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLW-S 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD+ V  +V+ SHI  LRKK+        + + R +GY 
Sbjct: 183 FDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYV 221


>gi|251778916|ref|ZP_04821836.1| putative lantibiotic biosynthesis regulatory protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083231|gb|EES49121.1| putative lantibiotic biosynthesis regulatory protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 220

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   + +        +G  +   ++     + Q + + D+  ++  +        
Sbjct: 4   ILAIDDEIGILNIIKVALEKEGHIVTTVSNANKISYNQYT-KYDLILLDVMMPE--IDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L   IR     P++ ++     +  +     G DD + KP    E+ ARV A  RR  +
Sbjct: 61  TLCSEIRNLVDCPILFLTAKTMEEDIVKGLSFGGDDYITKPFGISELRARVNAHLRRECR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N      ++ + + ++     E+ P  + E  I EYL  N G+  +K QI+ +++G 
Sbjct: 121 EKQNAFYISELKFYINAKEVYHDDELVPFTKSEYNICEYLALNHGQVFSKEQIYESVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD   +   +  HI  +R KL+ K+G + +++   +GY 
Sbjct: 180 FDGRSDTTAIVEHIKNIRSKLK-KIGINTIETVWGIGYK 217


>gi|225163853|ref|ZP_03726148.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224801534|gb|EEG19835.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 227

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   V         +   +     +        + +  D   ++  L       L
Sbjct: 3   ILIVEDERKVGQFVERALAEQHYTTRLVMTCAAARDALAESPADAIVLDLGLPD--GDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L R  RA     P++ +S   ++   +   + G DD + KP    E+LARV ++ RR  
Sbjct: 61  ALLREWRAAGFNEPVLILSARDAVSDRILGLNLGADDYLPKPFSIDELLARVRSLLRRHA 120

Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +    E   IR+    R    QG    L  RE  +LE  + N G+ + +T I   I
Sbjct: 121 SPSAKVTVLEHRGIRLDLLARTATAQGRPVELTNREFALLELFLQNTGRVLTRTLIAEKI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR----NKLGFDPVDSKRFLGYSI 220
           +      +E N+++ ++ +LR+K      +      + + R  GY +
Sbjct: 181 W-EDSYDMETNLIDVYVRRLRQKFEPSASDAFSPPLIKTVRGTGYQM 226


>gi|332143338|ref|YP_004429076.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553360|gb|AEB00079.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 240

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   + +P+I ++        +   + G DD + KP + RE+LAR  A+ RR  
Sbjct: 66  SICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRS 125

Query: 121 VSN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E G  ++    R+     +   L   E  +L+ L+ +  + +++ +
Sbjct: 126 SEAPGAPSKDVQIVEFGDYKLNLATREMTAGDKPLTLTSGEFAVLKSLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVF 233


>gi|126736572|ref|ZP_01752312.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126713885|gb|EBA10756.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 220

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++          +G++++        ++L  +   DV  ++  L  +    L
Sbjct: 3   ILIAEDEPVLASQLKKTLMSEGLTVDVAVDGAEAQYLGETEPYDVIILDLGLPIR--DGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + +R+  +   ++ ++        +D  D+G DD + KP H  E+ ARV A+ RR  
Sbjct: 61  TVLKNLRSGGNDTSILILTARNDWTDRVDGLDAGADDYLTKPFHMAELSARVRALIRRKA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        +   +      V G    L  +E  +L YL  N G+ V++T++   IY 
Sbjct: 121 GKATPVFSKDDVTFDTRTNQVMVDGVPMNLTSQEIAVLSYLFHNSGRLVSRTELSDHIY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +   +++LRKKL    G D +++ R  GY I
Sbjct: 180 QHDGDRDSNTIAVFVNRLRKKL----GSDLIETVRGRGYVI 216


>gi|220929731|ref|YP_002506640.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220000059|gb|ACL76660.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 226

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59
            ++I+D   V      +  ++G  +  F++    +  +   +   D+  ++  L  K   
Sbjct: 4   ILIIEDSKDVNSMLTEVLTEEGFEV--FSTYTGTDGFKEIKKNTYDLILLDIMLPFK--S 59

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             E+ + +R  S +P+I IS    + T +D    G DD + KP    E++ARV+A  RR 
Sbjct: 60  GDEILKEVRQFSDIPVIIISAKDMVGTKIDLLKMGADDYITKPFDLGEVVARVSANLRRS 119

Query: 120 K---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +        + V +D +   V      L  +E  I+E L+ NR K   K  ++  
Sbjct: 120 HRKTQTEKELRYKDMTVNTDAKRVYVNNTELDLTAKEYGIVELLIKNRNKVFTKATLYET 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           I+       ++N V++HIS LR KL+      + +++   LGY +
Sbjct: 180 IW-QDAYLGDDNAVKTHISNLRAKLKIANTQKEYIETVWGLGYRL 223


>gi|94497234|ref|ZP_01303806.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
 gi|94423339|gb|EAT08368.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
          Length = 236

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        + G  +   +S         +   D+  ++  L   G   +
Sbjct: 6   IILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPVDLVVLDVMLP--GTNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP+I IS   S    +   + G DD + KP   RE++AR+ AI RR+ V
Sbjct: 64  DLCRQIRRKSDVPIIFISARGSETDRIVGLELGADDYLPKPFGTRELIARIRAILRRVGV 123

Query: 122 S-------NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    + A      V    R+     G +  L   E  +L   +++  + +A+ ++
Sbjct: 124 ERGPDEHRESEAHFDGWAVNFPRRELRSPTGAIVDLTGAEFDLLCSFLSHPQRVIARERL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +         +  ++  +S+LR+KL  +    P+ + R +GY  +
Sbjct: 184 IE-LSRTRMGDSSDRSIDVLVSRLRRKLSTQDKGAPITTVRGVGYMFN 230


>gi|225569206|ref|ZP_03778231.1| hypothetical protein CLOHYLEM_05288 [Clostridium hylemonae DSM
           15053]
 gi|225162005|gb|EEG74624.1| hypothetical protein CLOHYLEM_05288 [Clostridium hylemonae DSM
           15053]
          Length = 220

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 86/219 (39%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   +          DG  ++     E E      +   +  ++  +   G    
Sbjct: 5   ILAVDDERNILMLIRNALEKDGYMVDTVAVPE-EVLHLDLSPYSLILLDVMMP--GLDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
            L   IR+ +  P++ ++              G DD + KP    E+ ARV A  RR  +
Sbjct: 62  ALCEEIRSGTDCPILFLTAKTGEGDITKGLGLGADDYITKPFGIGELRARVQAHLRRESR 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G ++     +     G+  P  + E  I EYL  ++G+  +K +I+  I+G 
Sbjct: 122 KRRHLMTVGDMQFLPGEKKALCGGQEIPFTKSEYAICEYLALHQGQVFSKERIYEHIFG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++  +   +  HI  +R K     G  P+++   +GY 
Sbjct: 181 YEKESDSTAITEHIKNIRAKC-QPAGISPIETVWGIGYR 218


>gi|194364697|ref|YP_002027307.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347501|gb|ACF50624.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 227

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 7/221 (3%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           I+D  +  +         G  ++  +       L  +    V  ++  L   G   L L 
Sbjct: 7   IEDDLVTAEEIATELRSHGFDVDLASDGSNGLALARAGDYAVITLDRMLP--GIDGLALV 64

Query: 65  RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122
             +R      P++ IS    +   +    +G DD + KP    E+ ARV  + RR   + 
Sbjct: 65  TTLRREGITTPVLMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLIRRQGPTG 124

Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +N    G + +    R     G+   L   E ++LE+L+ N G+ V ++ +F  ++G 
Sbjct: 125 AIDNVLRAGDLELDLMTRSARRGGDEIALLPTEFKLLEFLVRNAGQVVTRSMLFQEVWG- 183

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +      N+++ HI ++RK++       P+ + R  GY  D
Sbjct: 184 YHFDPGTNLIDVHIGRVRKRIEQPGRPQPIMTVRGTGYVFD 224


>gi|163797997|ref|ZP_02191938.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
 gi|159176718|gb|EDP61290.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
          Length = 223

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V +  +A F   G +++   S    E   +    D+  ++  L       L
Sbjct: 3   ILLVEDTEDVAEAVVATFTRHGHAIDHAPSCAAAEDALAVQEYDLVILDLMLPD--GSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E  R +RA    +P++ ++    +   +   D+G DD + KP   RE+ AR  A+ RR  
Sbjct: 61  ETLRALRAARRTMPVLVLTARLDVDDRVAALDNGADDYLMKPFDLRELEARARALIRRQS 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +   E G + + + GR   V G+   L RRE  +LE L+ NRG+ ++K ++F  ++ 
Sbjct: 121 DERSGVIEYGNLTLDAAGRTAAVAGQPLALTRREFGLLEALLVNRGRVMSKERLFDRLFS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +  V  N VE +I++LR+KL        + + R LGY I+
Sbjct: 181 FDETEVGINAVELYIARLRRKL--AASQVSIRTLRGLGYQIE 220


>gi|197287013|ref|YP_002152885.1| DNA-binding transcriptional regulator CpxR [Proteus mirabilis
           HI4320]
 gi|227354741|ref|ZP_03839159.1| two component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194684500|emb|CAR46276.1| two component system response regulator [Proteus mirabilis HI4320]
 gi|227165184|gb|EEI50012.1| two component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 232

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G ++      E    L   A  D+  ++  +  K    +
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFNVVLATDGEQALKLLD-ASIDLLLLDIMMPRK--NGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R + Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  ETLKELRQNFQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S  +          +   +++    ++     E   L   E  +L  L  + G+ V++  
Sbjct: 121 SEQKQTDGNTSPILQVDKLQLNPGRQEASFDNEPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL     G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPERTDGQPWFKTLRGRGY 226


>gi|315650118|ref|ZP_07903194.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eubacterium saburreum DSM 3986]
 gi|315487610|gb|EFU77917.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eubacterium saburreum DSM 3986]
          Length = 230

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +          + +  E  +          S    +  ++  +   G    
Sbjct: 4   ILVIDDDRELCALIRHTVLQESIEAECCHFGRVGLEKLKSNEYQLIILDVMMP--GFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR  S +P++  +      + +    +G DD + KP    E+LAR+ ++ RR  +
Sbjct: 62  HTLEQIRKESCIPVLMFTAKNDSFSKVRGLRNGADDYMTKPFVMEELLARIISLIRRYTM 121

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N             + +  D R    +   F LP +E  +L +   N+G+ + K QI+ 
Sbjct: 122 FNRNGNEAKTLNYDGLIIDLDTRSFTTEKGTFELPPKEFDLLLFCAKNQGRIMTKQQIYE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            ++G      + N++   IS+LRKKL  +      + + + +GY  +
Sbjct: 182 KVWGEPYVYDDSNIMSV-ISRLRKKLETDPGNPKYIQTVKGIGYRFN 227


>gi|258507543|ref|YP_003170294.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257147470|emb|CAR86443.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|259648894|dbj|BAI41056.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 226

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 13/224 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS----SAREDVSAIEAFLIGKGE 58
           + +DD   +       F      L  F  L  +    +    + + D+  ++  L     
Sbjct: 6   LAVDDDTAILAMLKRYFA---WRLPEFRLLTADAGQAALSQLAQQPDLILLDVNLPD--I 60

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               L   IRA + VP+I ++   + Q  +    +G DD V KP    E+ AR+ A  RR
Sbjct: 61  DGFTLTSRIRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRR 120

Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               + +A+    G I +        V      L  ++ +++E+L  N G+  ++ Q++ 
Sbjct: 121 AHQPDKQAQIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I+G +D   +E V+  HI ++RK         P+ +   +GY 
Sbjct: 181 KIWG-YDAQGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGYK 223


>gi|253771766|ref|YP_003034597.1| osmolarity response regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253322810|gb|ACT27412.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
          Length = 239

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRYK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|210632475|ref|ZP_03297403.1| hypothetical protein COLSTE_01305 [Collinsella stercoris DSM 13279]
 gi|210159570|gb|EEA90541.1| hypothetical protein COLSTE_01305 [Collinsella stercoris DSM 13279]
          Length = 226

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +    +    G   +   +      + +S   DV  ++  L       ++
Sbjct: 4   LLVEDTPRLAEAVAEILRKSGYGADVAQTGFDGLGMATSGAYDVVLLDIMLPD--MSGMD 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           + R +RA  + VP+I ++    +   +   D+G DD ++KP H  E+LAR+ A+ RR   
Sbjct: 62  VLRELRAAGETVPVILLTARQGVGDRVAGLDAGADDYLSKPFHASELLARIRAVTRRPAT 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + N  E   +R+    R    +G  E   L  RE ++LE LM   G  VA++ + + +
Sbjct: 122 YRAGNAIEACGMRLDGVERTVACKGSSEALELTERESQLLEALMRRAGSAVARSALMARV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G      +EN +E  +  LR KL        +++ R +GY +
Sbjct: 182 WGPT-VCADENRLEVLVHALRDKLEACGAPARIETVRGVGYRL 223


>gi|149918888|ref|ZP_01907374.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
 gi|149820262|gb|EDM79679.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
          Length = 239

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 98/233 (42%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +           ++E     E      +S   ++  ++  L   G   L
Sbjct: 6   ILLIEDDEKLAERTAEYLQSHKATVEIVPDGERGLERAASGEHELVLLDLMLP--GIDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S+VP+I +S        +   + G DD + KP   RE+LAR+ A+ RR   
Sbjct: 64  ELCRKLRQRSKVPVIILSARGDEVDRIVGLEVGADDYMPKPFSPRELLARIRAVLRRHSA 123

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     +   TGP+ +    R   + G    L   +  +L  L     + +++ Q+ + +
Sbjct: 124 AQGDDEDSVTTGPLEIDRARRTATIAGASCELTAYQFDLLWLLATQAERVLSRNQLHAQV 183

Query: 178 YGL-------FDEAVEENVVESHISKLRKKLRNKL---GFDPVDSKRFLGYSI 220
             L       FD  V+   ++ H+SK+R+ L       G   + + R +GY +
Sbjct: 184 RALRGEPAMDFDPTVD-RSIDVHLSKIRQALDAASPGRGAAMIKTVRGVGYVL 235


>gi|84393831|ref|ZP_00992576.1| DNA-binding response regulator [Vibrio splendidus 12B01]
 gi|86148079|ref|ZP_01066380.1| DNA-binding response regulator [Vibrio sp. MED222]
 gi|84375526|gb|EAP92428.1| DNA-binding response regulator [Vibrio splendidus 12B01]
 gi|85834139|gb|EAQ52296.1| DNA-binding response regulator [Vibrio sp. MED222]
          Length = 219

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +    +          E         +  +S   D   ++  L       L
Sbjct: 3   ILVVEDEPRLGQQILETLEGADWVPELSQDGIDALYRATSEEWDAIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P+I +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S     + G + + +       QG+   L   E +++ Y M N+ K +++T++   IY 
Sbjct: 121 GSAAPILQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N VE  I ++RKK+  K+    + + R LGY ++
Sbjct: 181 Q-DFDRDSNTVEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217


>gi|288960040|ref|YP_003450380.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288912348|dbj|BAI73836.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 221

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            ++++D A +  G        G +++   S E    L+ +    +  ++  L    G +V
Sbjct: 3   ILIVEDDAALARGVTGALKLAGYAVDHVASGEEAVRLERAEPYGLVVLDLGLPDLSGFEV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R  R  S VP++ ++   ++   +   D G DD + KP    E  ARV A+ RR +
Sbjct: 63  LTLIR--RRGSTVPVMILTAREAVADRVKGLDLGADDYLLKPFDPAEFEARVRALMRRGQ 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       GP+R         + G V  L +RE  +LE L+   GK V K ++   ++G
Sbjct: 121 GTPIPELACGPLRYDRSTATVTLNGRVLDLRKRELAVLEGLITRAGKVVPKDRLAGEVFG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            FDE V  N +E ++++LRKKL        + + R LGY ++
Sbjct: 181 -FDEPVAPNAIELYVARLRKKLEPDGPQ--IRTIRGLGYLME 219


>gi|255099609|ref|ZP_05328586.1| two-component response regulator [Clostridium difficile QCD-63q42]
          Length = 224

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD   +       F  +G  +  + +   ++ L+  ++  D+  ++  +       
Sbjct: 5   ILVVDDEEGIITLLKDYFEMNGYEV--YTAQSGKDALKKISKNPDIILLDINMPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+   IR +   P++ ++        ++ F +G DD + KP    E+ ARV+A  RR +
Sbjct: 61  IEVCNRIRDYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRREQ 120

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +N+ +      + +  + R   +      L ++E  I+E L  N G+   K +I+  +
Sbjct: 121 RKSNQTKIKFYNDLTIDYEKRLICIYNNQISLSKKEFDIVELLSMNPGQVFDKEKIYDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G ++     +V+  HI K+R KL      + +++   +GY 
Sbjct: 181 WG-YNSNGNSDVIMEHIRKIRIKLSKHTLENYIETVWGVGYK 221


>gi|152984853|ref|YP_001347435.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150960011|gb|ABR82036.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 272

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +    I      GV  +     +    L    R DV  ++  L        +
Sbjct: 55  LVVEDNFDLAGTIIDYLEAAGVVCDHARDGQAGLNLARDNRYDVILLDIMLPR--INGRQ 112

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R    Q P++ ++   +LQ  LD FD+G DD + KP    E+L R+ A+ RR   
Sbjct: 113 VCRQLREAGLQTPVLMLTALDTLQDKLDGFDAGADDYLLKPFELPELLVRLQALSRRRSG 172

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              R +   + +  D R     G    L     +ILE LM      V + Q+  +++G  
Sbjct: 173 QAQRLQVDDLVMDLDSRQVSRGGTPLALSPTAWKILECLMRASPALVTREQLGRSVWG-- 230

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE  E N +  H+  LR  +        + +   +G+ ++
Sbjct: 231 DEPPESNTLNVHMHHLRSTVDKGFATPLIHTLHSVGFQLE 270


>gi|113970165|ref|YP_733958.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114047645|ref|YP_738195.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113884849|gb|ABI38901.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113889087|gb|ABI43138.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 219

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+  G        G+ ++  +S  +++ L     E  SAI   L        
Sbjct: 3   IMLVEDNELLAQGICLSLAKLGMQVDHLSS--YQQALVGIKNETFSAIVLDLGLPDGNGK 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL +  RA    +P I ++      T L+  D G DD + KP   RE+ AR+ AI RR  
Sbjct: 61  ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + NN    G + +  + R+   + +  PL RRE ++L  L  + G+ + ++Q+    YG
Sbjct: 121 GLDNNSLNIGALSIDLNTREVTFRDQNVPLSRREFQLLLELAQSAGRVLTRSQLEQLTYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
              + V  N +E HI  LRKK+ N    + + + R +GY++ + N
Sbjct: 181 W--DEVGSNSIEVHIHHLRKKMAN----ELIKTVRGIGYTLTEVN 219


>gi|309791544|ref|ZP_07686043.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308226404|gb|EFO80133.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 228

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +G+ ++   S E    L +    D+  ++  L        
Sbjct: 4   LLIVDDEPAIVTVIRERLEREGLHVQTVGSGEAALHLLNQQPIDLVLLDVGLPD--IDGF 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RAH    P++ ++        +   + G DD V KP   RE++AR  A+ RR  
Sbjct: 62  EVLRRLRAHDLDTPVLLLTARGDEIDRVVGLELGADDYVVKPFSVRELVARARALLRRAT 121

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    AE      P+++    R    Q  +  L  RE  +L +L  + G+  ++  +   
Sbjct: 122 LRTRPAEPSVPPSPLQIDQPRRRATFQNHMLDLRPREFDLLAFLARHPGQVFSRDTLLRQ 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G  D  ++E  V+ H+ +LR KL       D + ++  +GY  
Sbjct: 182 VWGQ-DGFLDERTVDVHVRRLRAKLAEVDPEADLIQTEWGIGYRF 225


>gi|254429359|ref|ZP_05043066.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195528|gb|EDX90487.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 236

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G +++     E  +   S     +  ++  L   GE  L
Sbjct: 8   ILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQMDRALSRELYSLMVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R    V P+I ++        ++  D+G DD + KP + +E+ AR+ A+ RR  
Sbjct: 66  SICRRLREAENVMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRRHV 125

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP  +    R     G+   L   E  +L+ L+ N  + + + +
Sbjct: 126 RELPGAPSKEEGSVTFGPWILDLANRTLTRDGDPQSLTTGEFAVLKALLQNPREPLTRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + S   G    A+E   ++  +S+LR+ L +       + +   +GY  
Sbjct: 186 LMSLARGREWSAME-RSIDVQVSRLRRLLEDDPSKPRYIQTVWGVGYVF 233


>gi|78213886|ref|YP_382665.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198345|gb|ABB36110.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 262

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++D         G  ++  +     + L      D+  ++  L       L
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKV--DGL 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R   +    P++ ++     +  +  F+SG DD + KP    E+ ARV A+ RR
Sbjct: 63  TLCQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRR 122

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +       N     GP+ +  +  +     +   L   E  +L  L+   G+ VA +
Sbjct: 123 SDRAPVGSTNHNEILSYGPLTLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVAPS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I   ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 183 LILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|56965403|ref|YP_177135.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911647|dbj|BAD66174.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 238

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   +          +    ++   + +    L      ++  ++  L       
Sbjct: 6   ILIVDDEIGIVKLLEITLEKENFIHIDKATTGKEALQLTKEKTFNLILLDIMLPD--ISG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL   IR ++  P+I +S   +    L     G DD + KP +  E++AR+ AI RR K
Sbjct: 64  FELCTEIRRNTDTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQK 123

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +          + G    + +     VQ +      +E  +L +   N  +     Q++ 
Sbjct: 124 MYERSEKKPVYDYGYFAFYPESAILMVQNQTVECTAKELELLHFFCENPNRIFTTAQLYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            ++G  D   EE  V  HISKLRKKL +       + + R +GY  
Sbjct: 184 RVWGN-DVFGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKF 228


>gi|308047930|ref|YP_003911496.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307630120|gb|ADN74422.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 240

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 97/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++       + G  +   ++ + E+  +   RE+   +   L+  GE  L 
Sbjct: 9   LVVDDDMRLRNLLERYLVEQGFQVR--SAADSEQMDRHLERENFHLLVLDLMLPGEDGLS 66

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R +R     +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 67  ICRRLRQKGNEIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVLRRRPA 126

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                          G  R+    R+     E   L   E  +L+ L++N  + +++ ++
Sbjct: 127 EVPGAPSQEEAEVVFGQYRLNLATREMYKGDEPVSLTSGEFAVLKVLVSNPREPMSRDKL 186

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +   G  D +  E  ++  +S+LR+ + +       + +   LGY  
Sbjct: 187 MNQARGR-DYSALERSIDVQVSRLRRLIEDDPSNPRYIQTVWGLGYVF 233


>gi|290352159|dbj|BAI78790.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+    +          +G  +     +   E L+++  ++   I   L+       
Sbjct: 5   ILIIEYEKNLARFVSLELQHEGYEV--IVEVNGREGLETALEKEFDLILLDLMLPEMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R ++      ++ ++   S+   +   D G DD + KP    E+LAR+ AI+RR  +
Sbjct: 63  EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +          + +    R      +   L +RE  +L  LM N  + + + ++ S 
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +DEAVE NVV+ +I  LR K+        + + R +GY I
Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225


>gi|258615288|ref|ZP_05713058.1| DNA-binding response regulator [Enterococcus faecium DO]
          Length = 183

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 8/182 (4%)

Query: 47  SAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106
             +   ++      +++ + +R  SQ+P+I ++   +    +    +G DD V KP +  
Sbjct: 1   ELLILDIMMPEMDGMQVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPL 60

Query: 107 EILARVAAIYRRLKV-----SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYL 160
           E++ARV ++ RR K+       +  E   + +  D  +   + G+   L   E  IL  L
Sbjct: 61  EVMARVKSLLRRTKMQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLL 120

Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219
            ++  +  +  +IF  ++   +  V    V  H+S LR K+     G   + +   +GY 
Sbjct: 121 ASHPNRVFSADEIFERVWKQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYK 179

Query: 220 ID 221
           ID
Sbjct: 180 ID 181


>gi|237720754|ref|ZP_04551235.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|229449589|gb|EEO55380.1| two-component system response regulator [Bacteroides sp. 2_2_4]
          Length = 228

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V    +    ++G              L  +   D+   +  L        
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLP--KMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR  +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R+ 
Sbjct: 62  ELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVA 121

Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            +R+    +D E  G    L  +E  +L Y++ N  + +++ +I   
Sbjct: 122 GNAQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIAEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++         N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 182 VWNTH-FDTGTNFIDVYINYLRKKIDRDFEPKLIHTKAGMGFIL 224


>gi|187777886|ref|ZP_02994359.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC
           15579]
 gi|187774814|gb|EDU38616.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLP--GMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N  E   I +  D R+  V  +   L  RE  IL+ LM    K   K  +F +
Sbjct: 125 FSNIAPQNLLEYKEISLNKDTREVFVYDKQIMLTSREFDILQLLMGYPKKVFTKANLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VW-SSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229


>gi|299137820|ref|ZP_07031001.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600461|gb|EFI56618.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 226

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +              +   N+      + SS   +   ++A L   G    
Sbjct: 3   ILVVEDDRKMALVLRDALEKQSHRIVLANTGLEGLDIASSHEFESIILDAMLP--GMDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R A    P++ ++   +    +   DSGVDD + KP    E+ AR+ A+ RR  
Sbjct: 61  TVARSLRDAKVSTPILMLTARDATSDVVRGLDSGVDDYLTKPFAFAELFARLRALGRRTL 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   +   + +          G    L R E  +LE++M N    + +  I +A++G
Sbjct: 121 ATASLSYQLEDLCLDPHTHIASRSGRAIMLTRTEFLLLEFMMRNPHTVLRREAIINAVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++  VE N +++ + +LR K+    G   + + R  GY +
Sbjct: 181 -YEHTVENNTLDAFMKQLRSKVDEGHGNKLIHTVRGFGYKL 220


>gi|219556768|ref|ZP_03535844.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T17]
 gi|289568870|ref|ZP_06449097.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T17]
 gi|289542624|gb|EFD46272.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T17]
          Length = 236

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 9/219 (4%)

Query: 10  LVKDGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66
           L+    +    + G+ L GF    +++  E L+S+      AI   +       + +   
Sbjct: 16  LIAHSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTA 75

Query: 67  IRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKV 121
           +RA  + VP+  +S   S+   +   ++G DD + KP    E++ARV A+ RR       
Sbjct: 76  LRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATS 135

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S+     GP+ V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +
Sbjct: 136 SSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-Y 194

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           D A + NVV+  I  LR+KL    G   + + R +G+ +
Sbjct: 195 DFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVL 233


>gi|154503687|ref|ZP_02040747.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
 gi|153795787|gb|EDN78207.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
          Length = 311

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 14/229 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   ++D    L   +G ++    + +    L +SA  D+  ++  +        
Sbjct: 87  ILIADDEKEIRDILRLLLTGEGYAVCTAENGKEALVL-ASAEVDLYLLDVNMPE--LSGF 143

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR     P+I ++ Y      +  F +G DD + KP  + E+L RV AI RR   
Sbjct: 144 MAGSEIRKQFNAPIIFLTAYSGESDKVMGFSAGADDYIVKPFSNMELLMRVKAILRRSAR 203

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
               A+         G + +  + +    QGEV  L   E +ILE L+ ++ K  +   I
Sbjct: 204 GTAPAQEEKKSHIPFGDLILDLECQSVLRQGEVIVLTYTEFKILELLVTHKKKIYSLENI 263

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           + +I+   ++AV ++ +  HI  +RKKL +       + +    GY +D
Sbjct: 264 YQSIW--EEDAVGDSAIMVHIKNIRKKLEDDSRNPRYIKTAWGRGYYVD 310


>gi|54308194|ref|YP_129214.1| putative transcriptionalregulator [Photobacterium profundum SS9]
 gi|46912622|emb|CAG19412.1| Putative transcriptionalregulator [Photobacterium profundum SS9]
          Length = 225

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         +   + +  N+         S   D+  ++  L        
Sbjct: 3   ILIIEDETKLGKYLQLGLNESSFATDWVNNGLDGLHQAMSPEYDLILLDVMLPD--LDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   I+ H    P+I ++   S++  +     G DD + KP    E++AR+    R+ +
Sbjct: 61  KILTQIKTHYPTRPIIMLTARDSVEDRVKGLQLGADDYLVKPFAFIELIARIQNQVRKNE 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +      G + V    R      +   L  +E  +LE L++   + ++K  I S ++
Sbjct: 121 NVAAKTTLTIGDLHVDLLRRRVTRNDQHIDLTAKEFLLLELLVSREKEVLSKAFIASKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LRKK+ +   F  + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRKKVDDPFEFKLIHTLRGMGYVME 222


>gi|55822861|ref|YP_141302.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|116627727|ref|YP_820346.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|55738846|gb|AAV62487.1| response regulator (homolog to spaR Bsu & DvnR Cdi) [Streptococcus
           thermophilus CNRZ1066]
 gi|116101004|gb|ABJ66150.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
 gi|312278275|gb|ADQ62932.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus ND03]
          Length = 219

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 100/219 (45%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD+  +    +        ++ G  S+  +    S  R D+  ++  +       L
Sbjct: 4   ILVIDDQKDIVQLVVKALELQNHNVTGLTSV-LDLDKNSLPRFDLILLDIMMPDV--DGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           +    IR     P++ I+        +     G DD + KP   +E+ ARVAA  RR  +
Sbjct: 61  QFCHEIRNQVDCPILFITAKTQEADIVQGLSYGADDYICKPFGVKELQARVAAHLRREHR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +++   G  +     ++  ++ ++  L + E  I ++L  N+G+  +K QI++ +YG 
Sbjct: 121 ERHHKLSLGEFQFDLSAQELYIENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +++      V  HI  +R KL+  +G +P+++   +GY 
Sbjct: 180 YEDKGSPAAVAEHIKNIRAKLKE-VGQNPIETVWGIGYK 217


>gi|269139014|ref|YP_003295715.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Edwardsiella tarda EIB202]
 gi|267984675|gb|ACY84504.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Edwardsiella tarda EIB202]
 gi|304558949|gb|ADM41613.1| Copper-sensing two-component system response regulator CusR
           [Edwardsiella tarda FL6-60]
          Length = 227

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 100/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D             + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDEVKTGKYLCKGLTEAGFVVDLADNGLTGYHLAMTAGYDLIILDILLPDV--NGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++R+ +Q +P++ +S   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EIVRMLRSANQGLPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             +  ++     + V    R     G+   L  +E  ++ + + ++G+ + ++ I S ++
Sbjct: 121 PPIPESQFHVADLTVELLSRKVTRGGKRITLTGKEFTLVTFFIRHQGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + N ++  + +LR K+        + + R +GY ++
Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDLDFEPKLIQTVRGVGYLLE 222


>gi|94495598|ref|ZP_01302178.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
 gi|94424986|gb|EAT10007.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
          Length = 240

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +++        +G  +   +S        ++   D+  ++  +   GE  L
Sbjct: 8   LLLVDDERSIREPLAQYLSRNGFRVTAVDSAAEARVRLNANAIDLVILDIMMP--GEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR  S++P+I ++        +   + G DD V KP   RE++AR+  I+RR+  
Sbjct: 66  SLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRRVAS 125

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
              R            G +    +    + +G   PL   E  ++        + +++ Q
Sbjct: 126 GGQRVTAPDGATYAFAGWLLKSQERTLIDSEGVSLPLSTAEYNLMLAFATRPNQVLSRDQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +   I    +    +  +++ IS+LRKK+  +      + +    GY++
Sbjct: 186 LLD-ITQGREANAFDRAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTL 233


>gi|193212324|ref|YP_001998277.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193085801|gb|ACF11077.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 236

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 100/227 (44%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G S    ++   EE L+   +  V+ +   ++  G    
Sbjct: 6   ILIVEDDRNLAGLLKYNLEKAGYSC--LHAATGEEALEQLRQHAVNMVLLDIMLPGIDGF 63

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IR     S +P++ ++        +  F+ G+DD V KP   RE+  R+ AI +R
Sbjct: 64  EVCRRIRQDVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKR 123

Query: 119 LKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            + +            I +       ++ G+   L   E ++L  L+  RG+   +  + 
Sbjct: 124 DRRNRSNVQEVLRADGIEIDIGKHIAKLDGQPLALTLMEFKLLALLLKRRGQAQTREVLL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S ++ + D+++    +++H+++LR+KL +      + + R LGY  D
Sbjct: 184 SDVWDV-DKSINTRTIDTHVTRLREKLGDAG--KLIKTVRGLGYKFD 227


>gi|310642055|ref|YP_003946813.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309247005|gb|ADO56572.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 235

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++          G       + E       S + D+  ++  L       +
Sbjct: 6   ILVVEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSRQPDLMILDLGLPD--MDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S +P+I +S     +  +D  D+G DD + KP    E+LAR+    RR++V
Sbjct: 64  DIIKKLREWSNMPIIVVSARSEDRDKIDALDAGADDYLTKPFSVEELLARLRVSLRRIRV 123

Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           + ++          G +++        +  +   L   E ++L  L  + GK +    I 
Sbjct: 124 NGDKILKDASSFINGNLKIDYAAGCVWIGEKEIHLTPSEYKLLCLLAKHVGKVLTHNFIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             I+G     +    +   ++ LRKK+         + +   +GY +
Sbjct: 184 HEIWGSHSYDIP--ALRVFMATLRKKIEKTSSQPKFIQTHIGVGYRM 228


>gi|257783900|ref|YP_003179117.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257472407|gb|ACV50526.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 226

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG  ++  ++      +    + D+  ++  L   G   L
Sbjct: 3   ILVVEDEKELLASIGEGLELDGYYVDLVDNGTQALEMAQLEQYDLILLDLNLP--GIDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R  HS+  ++ +S   S+   +   D+G DD + KP    E+ AR+  + RR  
Sbjct: 61  DLLRTLRSEHSETKVLILSARSSVSDRIVGLDAGADDYLIKPFAFGELEARIRTLLRREY 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +        G +R  +  R   V      L ++E  ILEYLM N G  V+  ++ +  + 
Sbjct: 121 IHGEASLTLGELRFDTTARQVFVGDAQVNLTKKELAILEYLMRNAGAVVSSEELMAHAW- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D  V+   N V  HI  +RKKLR  LG+DP+ +K   GY    +
Sbjct: 180 --DSNVDLFSNSVRVHIFSIRKKLREALGYDPISNKVGEGYCFKKD 223


>gi|146283048|ref|YP_001173201.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145571253|gb|ABP80359.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
          Length = 225

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D AL+  G +A     G+ ++   +    E L  +A  DV  ++  L    E  L 
Sbjct: 4   LLAEDDALIASGIVAGLNAQGLIVDHAATAAAAEALLRAAHFDVLILDLGLPD--EDGLA 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R +R    ++P++ ++   ++   +    +G DD + KP   RE+ AR+  + RR   
Sbjct: 62  LLRRLRQQGLELPVLVLTARDAVSDRVTGLQAGADDYLLKPFDLRELAARLHTLMRRMSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S N  E G +       +  + G +  L RRE+ +L+ L+ N+G+ ++  Q+  A+YG 
Sbjct: 122 RSVNLIEHGRLSYDPSRCEARLDGRLVDLSRREQALLQALLNNQGRVLSSEQLKDAVYGF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            D+ VE N +  HI  LR+KL    G   V++ R LGY +
Sbjct: 182 ADD-VESNALNVHIHHLRRKL----GSGIVETVRGLGYRL 216


>gi|260550899|ref|ZP_05825105.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260406026|gb|EEW99512.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
          Length = 220

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D     +   +    DG  ++     ++          D   ++  L    GEKV
Sbjct: 3   ILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGEKV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+ A  R   
Sbjct: 63  LTTIRY--KQKNVPVIFITARDSIHDRVEGLDLGANDYLIKPFSLEELSARIRAQLRNQT 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S       G + + +  +   + G    L  +E +IL  LM +    + + Q+  A+Y 
Sbjct: 121 LSQQSILIWGDLHLDTQAKVVSLAGNPIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             DE +E N +E  I +LRKK+    G   + + R LGY +
Sbjct: 181 WGDE-IESNAIEVFIYQLRKKI----GSSSIKTIRGLGYRM 216


>gi|239928546|ref|ZP_04685499.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291436871|ref|ZP_06576261.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291339766|gb|EFE66722.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 228

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED----VSAIEAFLIGKG 57
            +L++D   V     A+    G  +    S   EE LQ+   E     V  ++  L  + 
Sbjct: 3   LLLVEDDNHVAAALSAVLARHGFDVTHARS--GEEALQALVPEGNGFGVVLLDLGLPDQ- 59

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ R
Sbjct: 60  -DGYEVCGRIRKRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSR 118

Query: 118 R------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R         +      GP+R+    R   V   V  L R+E  +L  L    G    + 
Sbjct: 119 RTVHEETTGAAEAELRLGPVRIELPTRQVSVNDSVVQLTRKEFDLLALLAQRPGVVFRRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI S ++    E      +E H++ LR KLR       +++ R +GY +
Sbjct: 179 QIISEVWRTSWEGTG-RTLEVHVASLRAKLRMPA---LIETVRGVGYRL 223


>gi|254507166|ref|ZP_05119303.1| two-component response regulator protein [Vibrio parahaemolyticus
           16]
 gi|219549876|gb|EED26864.1| two-component response regulator protein [Vibrio parahaemolyticus
           16]
          Length = 224

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    ++       + G +++          +  S   D+  ++  L       +
Sbjct: 3   LLIIEDDQTTREFVAKGLQEHGYTVDQAEDGNSGLMMALSGEYDLVVLDRMLPY--LDGM 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   I+A    +P++ +S   S++  +D   +G DD + KP    E++ARV  I  R +
Sbjct: 61  KVLSAIKATLEHLPVLILSAMDSVEDRVDGLQAGSDDYLIKPFALAELIARVDIIIHRNQ 120

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++      + V               L  +E +++++ + +  + V++ ++F +I
Sbjct: 121 RQTKPHSTLSYDCLTVDLRAHRVTCNNTELQLQPKEFQLIQHFIEHSEQVVSRMRLFESI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H++ LR+KL      D + + R  GY +
Sbjct: 181 W-SYHFDPKTNVIDVHVANLRRKLEEAGCRDLLHTVRGAGYVL 222


>gi|167761405|ref|ZP_02433532.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704]
 gi|167661071|gb|EDS05201.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704]
          Length = 225

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          DG  ++     E    +  S   D+  ++  L   G   +
Sbjct: 3   ILVVEDEKTLCKTIAKGLRLDGYEVDTCFDGETAWDIILSESYDLIILDLNLP--GMDGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR   ++  ++ +S    LQ  +D  D G +D + KP H  E+ ARV ++ RR  
Sbjct: 61  KVLQKIRMEDTETNILILSARGQLQDKIDGLDGGANDYLCKPFHFEELEARVRSLTRRCV 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V NN   E G I + +  R    +G    L R+E  +LEYLM ++ + V++ ++   ++ 
Sbjct: 121 VQNNLVLECGEISLDTKARTALARGIELSLTRKELGLLEYLMLHQERPVSQEELIQHVW- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D +V+   N +  HIS LRKKLR  LG+DP+ ++   GY I
Sbjct: 180 --DGSVDSFSNSIRVHISALRKKLRAALGYDPITNRIGQGYLI 220


>gi|134101321|ref|YP_001106982.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008141|ref|ZP_06566114.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913944|emb|CAM04057.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 3/218 (1%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +++   A     G ++E        E +  + R DV  ++  L   G     
Sbjct: 6   LVVEDSAPIREAVAAGLRTAGHTVELRPDGRGVEEVVRTFRPDVVVLDLMLP--GRDGFA 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           +   +R+ + + ++ ++   S+   L    SG DD V KP    E++ARV A+ RR+   
Sbjct: 64  VLETLRSGADLGVVILTARDSVPDRLRGLRSGADDYVVKPFDTAELVARVEAVLRRMGRV 123

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
               E   + +  D       G V  L   E R+L YL+A RG+ V+K QIF+ ++G   
Sbjct: 124 AATVEVDDLVIDQDAGVAVRAGSVLALTATEWRLLCYLVAQRGRVVSKLQIFTGVWGYQS 183

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             V+ N+VE H+S LR+KL    G   V + R  GY++
Sbjct: 184 LDVDLNLVEVHVSALRRKLEQH-GRRLVHTVRGRGYAL 220


>gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Herminiimonas
           arsenicoxydans]
          Length = 207

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 90/204 (44%), Gaps = 6/204 (2%)

Query: 21  DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGIS 79
           + G  ++   +      +  + + D+  ++  L         + + +R A  Q+P++ ++
Sbjct: 2   EAGFMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDV--DGWRIVKSLREAGKQMPVLFLT 59

Query: 80  DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDG 137
               +   +   + G DD + KP    E+LARV  + RR      + R E   + +    
Sbjct: 60  ARGGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGSAPSQSERLEVADLILDLPR 119

Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197
           R     G+   L  +E  +LE L   +G+ + ++ I S ++ + +   + N ++  I +L
Sbjct: 120 RKATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVWDM-NFDSDSNAIDVAIRRL 178

Query: 198 RKKLRNKLGFDPVDSKRFLGYSID 221
           R K+ +      + + R +GY++D
Sbjct: 179 RAKIDDPFEPKLIHTVRGMGYTLD 202


>gi|326383751|ref|ZP_08205436.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197515|gb|EGD54704.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 227

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++E             + R D+  ++  +       L
Sbjct: 3   ILVVDDDRAVRESLRRSLSFNGYTVETAGDGLEALEKVIAERPDLMVLDVMMPR--LDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A   +P++ ++   S+   +   D+G DD + KP    E+LAR+ ++ RR  
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEELLARLRSLLRRTT 120

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +E      + +    R+         L R E  +LE LM+N  + + +++I   +
Sbjct: 121 RDEEESEAVSFADLTLDPVTREVTRGERQISLTRTEFALLEMLMSNPKRVLTRSRILEEV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D     N +E +I  LR+K         + + R +GY +
Sbjct: 181 WG-YDFPTSGNALEVYIGYLRRKTEADGEPRLIHTVRGVGYVL 222


>gi|262401995|ref|ZP_06078560.1| two-component system response regulator OmpR [Vibrio sp. RC586]
 gi|262351967|gb|EEZ01098.1| two-component system response regulator OmpR [Vibrio sp. RC586]
          Length = 240

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGLS 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R +R  +  +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSAEETVIEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|256845527|ref|ZP_05550985.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294785176|ref|ZP_06750464.1| DNA-binding response regulator ArlR [Fusobacterium sp. 3_1_27]
 gi|256719086|gb|EEU32641.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294486890|gb|EFG34252.1| DNA-binding response regulator ArlR [Fusobacterium sp. 3_1_27]
          Length = 227

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++             ++     E    + S    DV  ++  L  K     
Sbjct: 7   ILIIEDDKNIQRLLALELRHKNYFVDSAYDGEQGIEIFSKNSYDVVLLDLMLPKK--SGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  +  P+I I+   S+   ++  D G +D + KP    E+LAR+    R  + 
Sbjct: 65  EVCQELRKLADTPIIVITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVSTRNKEN 124

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           SNN+       I++    +   +  E   L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 125 SNNKHFYLENEIKMDILAKKVFLNEEEIALTKTEFLILEYFMKNKGLSCSREKIIIDVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   EE +V+ +I+ LRKK+ +K     + + R  GY   +
Sbjct: 185 -YDFDGEEKIVDVYINSLRKKIDSK--SKYIHTIRGFGYIFQY 224


>gi|60679763|ref|YP_209907.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis NCTC 9343]
 gi|60491197|emb|CAH05945.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis NCTC 9343]
          Length = 228

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V D       ++G +     + +    L+         + + ++       
Sbjct: 4   ILIIEDEQRVADLLRVGLEENGYNC--LVAYDGAMGLRMFRANTFDLVISDIVLPKMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL + IRA +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELCKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRKL 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + V    +  +  G    L  +E  +L Y++ N  K V++  I   
Sbjct: 122 AVVTDVEEELNYADLSVNLLDKSVKRAGRDIKLSPKEYNLLVYMIENAEKVVSRMDIADK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++         N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 182 VWNTH-FDTGTNFIDVYINYLRKKIDRDFDTKLIHTKTGMGFIL 224


>gi|56130780|ref|YP_145683.1| two component response transcription regulator [Ralstonia
           metallidurans CH34]
 gi|94152513|ref|YP_581920.1| regulator protein CopR [Cupriavidus metallidurans CH34]
 gi|10047062|emb|CAC07978.1| CopR protein [Ralstonia metallidurans CH34]
 gi|56068770|emb|CAI11332.1| two component response transcription regulator [Cupriavidus
           metallidurans CH34]
 gi|93358883|gb|ABF12970.1| CopR regulator from the two components sensor/regulator family
           involved in Cu(II)/Cu(I) resistance [Cupriavidus
           metallidurans CH34]
 gi|222875178|gb|EEF12309.1| predicted protein [Populus trichocarpa]
          Length = 228

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++   +    +    +   D+  ++  L        
Sbjct: 3   LLVVEDEVKTGEYLRQGLTEAGFVVDLVANGLDGQHFAVNETYDLIILDVMLPDV--DGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   IRA    VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  HILHAIRASGNAVPVLFLTARDSVADRVRGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++++ +R +   + +    R     G    L  +E  +LE     RG+ + ++ I S ++
Sbjct: 121 VQLAMDRIQVADLILDLSRRRASRGGRRITLTSKEFALLELFARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDGFEVKLIQTVRGMGYVLE 222


>gi|323498131|ref|ZP_08103135.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326]
 gi|323316842|gb|EGA69849.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326]
          Length = 231

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N+ E    L +   + +  I   ++      +
Sbjct: 4   ILLIDDDTELTSLLKEVLSFEGFDVSEANNGEEGLALLT---DGIDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R + Q P++ ++        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 61  ETLKRLRENWQTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQT 120

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S++          E   I+V+   ++   QG+   L   E  +L + + N G+ + K  +
Sbjct: 121 SSSNKASKSSDCIEYQDIQVYPGKQEAFCQGKQLDLTTTEFALLTHFVQNPGETLTKEAL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              + G    A +   ++ H+S LRKKL     G   + + R  GY +
Sbjct: 181 SLDVLGKRLAAFD-RAIDMHVSNLRKKLPERADGKSRIKTLRGRGYLL 227


>gi|284046158|ref|YP_003396498.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950379|gb|ADB53123.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 224

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D        +G ++    + +  E  + +  +DV  +   ++  G   L
Sbjct: 3   ILVIEDETAIADFVQRGLQAEGYAVSI--AGDGIEGERRALHDDVDLVVLDVMLPGRDGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   IR    ++P++ +S   ++   +   D G  D V KP    E+ ARV A  RR +
Sbjct: 61  AVLSSIRRVKPELPVVMLSARATVDDRVAGLDGGATDYVTKPFSFDELAARVRAHLRRPR 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        I +   GR+   +G    L  RE  +L Y + +  + +++ QI SA++G
Sbjct: 121 QRDATTLSAAGIELDLLGRNVRREGVELRLSAREFDLLAYFLRHPDQALSRQQILSAVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D     NVVE +I  LR+KL       P+D+ R +GY +
Sbjct: 181 -YDFDPGTNVVEVYIRYLRRKLELPGRPTPIDTLRSVGYRL 220


>gi|290956971|ref|YP_003488153.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646497|emb|CBG69594.1| two component system response regulator [Streptomyces scabiei
           87.22]
          Length = 228

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 18/229 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED----VSAIEAFLIGKG 57
            +L++D   V     A+    G  +    S   EE LQ+   E     V  ++  L  + 
Sbjct: 3   LLLVEDDNHVAAALSAVLARHGFDVTHARS--GEEALQALVPEGNGFGVVLLDLGLPDQ- 59

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
               E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ R
Sbjct: 60  -DGYEVCGKIRKRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVAR 118

Query: 118 R------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R          ++    GP+ +    R   V G    L R+E  +L  L    G    + 
Sbjct: 119 RRAPDEAATPGDSGLRLGPVLIELPTRQVSVDGTPVQLARKEFDLLALLAQRPGVVFRRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI S ++    E      +E H++ LR KLR       +++ R +GY +
Sbjct: 179 QIISEVWRTSWEGTG-RTLEVHVASLRSKLRMPA---LIETVRGVGYRL 223


>gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905]
 gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905]
          Length = 230

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A++           G +++   + + EE L+     +   I   L       +
Sbjct: 3   LLLVEDEAVLSKILSKGLKKSGYAVD--TAFDGEEALELFEINEYDLIILDLNLPKMDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+   IR  S  V ++ +S   ++   +   D G +D + KP   +E+ AR+  + RR  
Sbjct: 61  EVLEQIRVQSEDVKILILSARSAIHDKIAGLDRGANDYLIKPFDFQELDARIRNLLRRTF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +       I + S  +   V GE+ P+ ++E  ILEYLM  + K V+  ++   ++ 
Sbjct: 121 SQKSTIMSLEKITLDSSRKIVLVNGEIIPVTKKEYAILEYLMLQQNKVVSSEELIEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             +  +  N ++ HI  LRKK+ + LG  + + + R  GY I
Sbjct: 181 -SEADLFSNSLKFHIHSLRKKIADVLGEKEVIQTVRGQGYMI 221


>gi|331694656|ref|YP_004330895.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326949345|gb|AEA23042.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 233

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 91/236 (38%), Gaps = 27/236 (11%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G ++E     +       ++R D   ++  +       L
Sbjct: 3   ILVVDDDRAVRESLRRSLAFNGYTVELAGDGQAALDALQASRPDAMVLDVMMPR--LDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH---------------- 104
           E+ R +RA    +P++ ++   ++   +   D+G DD + KP                  
Sbjct: 61  EVCRRMRAAGDELPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRRT 120

Query: 105 HREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164
             E       I      ++   E   + +  D RD         L R E  +LE L+A+ 
Sbjct: 121 PDE-------IAAAAAGASKPLEFADLSLDPDTRDVRRGDRPISLTRTEFSLLELLLAHP 173

Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + + QI   ++G +D     N +E +I  LR+K         + + R +GY +
Sbjct: 174 RRVLTRAQILEQVWG-YDFPTTGNALEVYIGYLRRKTEAGGEPRLIHTVRGVGYVL 228


>gi|315304164|ref|ZP_07874543.1| response regulator SaeR [Listeria ivanovii FSL F6-596]
 gi|313627471|gb|EFR96225.1| response regulator SaeR [Listeria ivanovii FSL F6-596]
          Length = 229

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G  +   N+ E    L  S   D+  ++  +        
Sbjct: 4   ILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIMMP--KMDGH 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   I+      P + +S     +  L     G DD ++KP   RE++ RV  I RR K
Sbjct: 62  TLVMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRRSK 121

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S+     + G + +    R   V  E   L  +E  +L  L +   +  +K+++   ++
Sbjct: 122 RSSEPETLKHGSLFLDKSKRLVLVNQEELELTIKEFDLLWLLASENKRVFSKSELLERVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           G ++   + N +  HI  LR+KL+        + +   LGY  +
Sbjct: 182 G-YEYDGDANTINVHIHHLREKLQANDEKVIFIKTVWGLGYKFE 224


>gi|294140509|ref|YP_003556487.1| transcriptional regulatory protein PhoP [Shewanella violacea DSS12]
 gi|293326978|dbj|BAJ01709.1| transcriptional regulatory protein PhoP [Shewanella violacea DSS12]
          Length = 224

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++         + G  ++   + +   +  ++   DV+ I+  L  +    +
Sbjct: 3   ILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIIDLGLPDQ--DGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L + +R +  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  TLIKNLRDNELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +  +G + +    +   +      +   E  ILEYLM +  + VAK ++   IYG
Sbjct: 121 GFVRPKINSGALELDLAAKQVSMNSVPMEITAFEYLILEYLMRHCHEVVAKQRLLDVIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL  +   +P+ + R  GY  D
Sbjct: 181 --DKEGDPNTIEVMVSRLRKKLTKEGLDNPIATIRGQGYKFD 220


>gi|83945804|ref|ZP_00958147.1| two-component system response regulator [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850807|gb|EAP88669.1| two-component system response regulator [Oceanicaulis alexandrii
           HTCC2633]
          Length = 234

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +         ++G ++  F          +    D++  +  +       L
Sbjct: 4   IALVDDDENILTSVSMFLENEGYNVRTFTDGSAALPHLTETPPDLAIFDIKMPR--MDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++            D G DD + KP  H+ +  R+ A+ RR + 
Sbjct: 62  ELLRRVRQSSNLPVIFLTSKDGEFDEALGLDLGADDYIAKPFSHQLLARRIKAVLRRAQA 121

Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                       +   E G + +  +      QG+   L   E  IL  L    G   ++
Sbjct: 122 DPAGAEGGEGNEHKVIERGSLVLDPNRHACTWQGKPVRLTVTEFLILHALANRPGFVKSR 181

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             +  A Y      V++  ++SHI ++RKK R+    FD +++   +GY 
Sbjct: 182 DSLMDAAYD-DQVYVDDRTIDSHIKRIRKKFRDVDDTFDSIETLYGVGYR 230


>gi|326388965|ref|ZP_08210547.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206565|gb|EGD57400.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 244

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 95/229 (41%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++       G+ G ++   +     +   +  R+    I   L+  GE  L
Sbjct: 11  ILVVDDDPELRALLTRFLGEHGYAVRAVDGGRAMD--SALQRDPADVIVLDLMMPGEDGL 68

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA     P+I ++        +   + G DD + KP   RE++AR++A+ RRL 
Sbjct: 69  AVLRRLRAGGDPTPVIMLTARGDAIDRVLGLEMGADDYLGKPFLPRELVARISAMLRRLG 128

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  +     GP  +         +G+   L  RE  +   L  + G+ +++ Q+  
Sbjct: 129 PDRTLARDEVLTVGPFTINFSAMTVAREGQPLVLSSREYALFAALARSAGRPLSRAQLIE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223
              G  D  V +  ++  +++LR+ +  +      V +   +GY +  N
Sbjct: 189 RALGR-DAEVTDRAIDVQVARLRRAIGDDPSDPRHVRTVWGVGYVLADN 236


>gi|241767666|ref|ZP_04765303.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241361391|gb|EER57893.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 239

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A + +  +A     G   E   SL     L  +A      ++  L   GE + 
Sbjct: 22  ILLIEDDAPLAEALMAFLNARGFVCECAASLADARALLPAAHWAAVLLDWQLPD-GEGLA 80

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120
            LP + R      +I ++    +   +   D+G DD + KP    E+LAR+ A+  RR  
Sbjct: 81  LLPLLRRTLPDSAVIMLTARDQITDRIRGLDAGADDYLVKPYDPDELLARLRAVERRRSG 140

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V +   +   + +        + G+   +  +E  +L  +     +   +  +  A+YGL
Sbjct: 141 VGSATLQLQGLSIDLARMVVTLDGQPVEITAKEWALLRVMALRPDRIHTRESLQDALYGL 200

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            D     N +E  IS LR+K+    G D + + R LGY ++
Sbjct: 201 -DANASSNTLEVFISNLRRKI----GRDRIQTLRGLGYKLN 236


>gi|229542414|ref|ZP_04431474.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326834|gb|EEN92509.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 225

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 101/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D          +   +   +      E           D+  ++  +   G + +
Sbjct: 3   ILLAEDDRRFGKLLHHMLEKEKHQVAWEQDGERAYDEAVFGSYDMLVLDWMMP--GLEGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +R    Q  +I ++   ++   +    +G DD + KP    E++AR+ A+ RR L
Sbjct: 61  EICRKLRRQGFQGGIIMVTARDAVDDVVAGLRAGADDYIVKPFAFDELVARIDALGRRKL 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K          + +  + +  E  G++ PL R+E ++ EY M N+   + + +I   I+G
Sbjct: 121 KTYQETITCAYLALHLESKQAEANGKMIPLTRQEYQLCEYFMRNKNLVLPREKIIEHIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L DE + +N +++ + ++RKK+  +     +++ R LGY ++
Sbjct: 181 L-DEDISDNALDALVKRVRKKIDREGERSLIETVRGLGYRMN 221


>gi|15893941|ref|NP_347290.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023528|gb|AAK78630.1|AE007581_1 Response regulator (CheY-like receiver domain and HTH DNA binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325508068|gb|ADZ19704.1| Response regulator (CheY-like receiver domain and HTH DNA binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 221

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +             + +  +  E   +       D   ++  L       +
Sbjct: 3   LLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLP--KMDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +R      P++ ++        +   DSG DD + KP   +E+ AR+ A+ RR  
Sbjct: 61  TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +N  +   + + +  +  +V  ++  L  RE  ILE L  N    V+  +I   ++G
Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D     NV+  HI+ LR+K++   G   +++ +  GY +
Sbjct: 181 DNDNQF-SNVIRVHIANLRRKIKCSGGETLIETLKGKGYRL 220


>gi|237807645|ref|YP_002892085.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237499906|gb|ACQ92499.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 229

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 98/226 (43%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +         ++G +++  +  E       S   D+  ++  +       +
Sbjct: 4   ILLVDDDLELCSMQREYLSNEGFAVQMCHDGERGLEEALSGDYDLILLDVMMP--KLNGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R HS +P++ ++        +   + G DD V+KP   RE++ARV AI RR   
Sbjct: 62  DVLRRLRNHSNIPVLMLTAKGDDIDRIIGLELGADDYVSKPCTPRELVARVRAILRRADP 121

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                        G + + +  R+   + E+  L   E  +LE L    G+ ++K  +  
Sbjct: 122 DKQEPGQLQPLRVGALTISAASRNATWRDELLDLTSTEFNLLEILCRRAGRIISKEDLSL 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              G    A  +  ++ H+S LR+KL   K G  P+ + R +GY +
Sbjct: 182 HTLGRP-LARYDRSIDVHVSNLRQKLGVLKDGRSPIQTVRGIGYQL 226


>gi|297156739|gb|ADI06451.1| two-component system regulator [Streptomyces bingchenggensis BCW-1]
          Length = 240

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 26/237 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-----DVSAIEAFLIGK 56
            +L++D   V     A+    G  +    S   EE L++   +      V  ++  L  +
Sbjct: 7   LLLVEDDNHVAAALSAVLARHGFEVTHARS--GEEALRALLPDSGPPFGVVLLDLGLPDQ 64

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                ++   IR  +  P+I ++    +++ +     G DD V KP    E+LAR+ A+ 
Sbjct: 65  --DGFQVCGRIRKRTTTPVIMVTARADVRSRIHGLHLGADDYVVKPYDTMELLARIHAVS 122

Query: 117 RRLKVS-------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163
           RR   +             N     GP+ +    R   V G    L R+E  +L  L   
Sbjct: 123 RRTLPADPAPSAEEGPDSRNAPLRIGPVTLDLATRQVAVDGATVSLTRKEFDLLALLAQR 182

Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            G    + QI S ++    E      +E HI+ LR KLR       +++ R +GY +
Sbjct: 183 PGVVFRREQIISEVWRTSWEGTG-RTLEVHIASLRSKLRMPA---LIETVRGVGYRL 235


>gi|315655447|ref|ZP_07908347.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus curtisii
           ATCC 51333]
 gi|315490387|gb|EFU80012.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus curtisii
           ATCC 51333]
          Length = 224

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A + D           S+    S +    L+   + D+   +  +        
Sbjct: 4   ILVVDDEAAICDVIAKSLKRASFSVTACTSAKEALTLR-LEQFDLMIFDVMMSD--MDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R     P++ ++   +    +     G DD + KP    E+++RV A  RR K 
Sbjct: 61  ELCRNVREKVDCPILFLTAKTTETDVIQGLAMGADDYIRKPFTPSELVSRVNAHIRREKR 120

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +     G IR     R+  V+ E+  L + E  I E ++ +RG+  ++ Q+     G 
Sbjct: 121 LHHAVLTDGEIRFLLAAREVRVRDEIVTLTKMEYEICELMIRHRGQVFSRKQLLDQAGGY 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E+    VVE HI  +RKK       DP+ +   +GY  D
Sbjct: 181 WTESEPAAVVE-HIKNIRKKF-APYQVDPIKTIWGIGYKWD 219


>gi|296161178|ref|ZP_06843987.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295888519|gb|EFG68328.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 224

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++    +    D   +++     +           DV  ++  L  +    +
Sbjct: 3   ILLVEDDEMIGGAIVQALKDAAYAVDWVCDADSATGALIGHEHDVVLLDLNLPKR--DGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +RA  S+ P+I ++   SL   +   D+G DD + KP    E+LAR+ A+ RRL 
Sbjct: 61  DVLRSLRAKGSKAPVIILTARDSLDDRIAGLDAGADDYLVKPFEIGELLARIRAVTRRLG 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + R  +G + + S+            L  RE  +L  LM   G  ++++++   +Y 
Sbjct: 121 DHGDARMTSGNLTLDSNTHLAVYGDTECNLTGREFALLSALMMKPGTVLSRSELERKVY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++E VE N VE  I  +RKKL    G   + + R +G+ +D
Sbjct: 180 AWEEQVESNAVEVVIHGIRKKL----GASVIRNVRGVGWLVD 217


>gi|298346157|ref|YP_003718844.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304390083|ref|ZP_07372037.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654737|ref|ZP_07907643.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315657339|ref|ZP_07910221.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298236218|gb|ADI67350.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304326565|gb|EFL93809.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491201|gb|EFU80820.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315491811|gb|EFU81420.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 225

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +        +G  + G +       L+     D+  ++  L       L+
Sbjct: 5   LLVEDDPAIAEPLTRALQREGYEV-GAHV-TGGSALKQVNDSDMVILDLGLPD--MDGLD 60

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA    +P++ ++        +   D+G DD V KP    E+LARV A+ RR   
Sbjct: 61  VARTIRAQGITIPILILTARTGEVDMVVGLDAGADDYVTKPFRLGELLARVRALLRRSGG 120

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +      +R+               L  +E  +L  L+   G  V +  I   ++
Sbjct: 121 EITEESDLSAQDVRIEVSAHRAFQGTRELQLTAKEFELLRVLVREAGAVVEREAIMREVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G  D +     ++ H+S LR+KL  +      + + R +G+  +
Sbjct: 181 GG-DPSGSTKTLDMHVSWLRRKLGDDANNPHYITTVRGMGFRFE 223


>gi|220934382|ref|YP_002513281.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995692|gb|ACL72294.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thioalkalivibrio sp. HL-EbGR7]
          Length = 226

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 96/222 (43%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++          L ++   D+  ++  L        
Sbjct: 3   ILIVEDEPKTGEYLRQGLSEAGFVVDLARDGLDGLHLATTGDYDLLILDVMLPR--MDGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R +  ++P++ ++   +++  +   + G DD + KP    E+LARV ++ RR K
Sbjct: 61  ALLQAVRLSGREMPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  +   + +    R     G    L  +E  +LE L+  +G+ + ++ I S ++ 
Sbjct: 121 SKEPETLKAADLEIDLLRRRVTRGGTRIDLTAKEFALLELLVRRQGEVLPRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV+E  + +LR K+        + + R +GY ++
Sbjct: 181 M-NFDSDTNVIEVAVRRLRAKVDEPFEPKLIRTVRGMGYVLE 221


>gi|288939789|ref|YP_003442029.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288895161|gb|ADC60997.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 225

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V +   A     G  +E         ++  +     + ++  L   G   L
Sbjct: 3   LLLVEDDDQVAETVTAGLTAAGFLVERARDGREAWFMGDTEPYAAAILDLGLP--GLDGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R  RA  Q +P++ +S        ++  ++G DD + KP    E+LARV A+ RR  
Sbjct: 61  SVLRQWRAAGQRLPVLILSARGDWTERVEGIEAGADDYLPKPFRFEELLARVRALIRRAA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G  R+ +  +     G    L  +E R++ YLM   G+ V++ ++   +Y 
Sbjct: 121 GQPAPVLVHGSFRLDTRRQTLSRDGLPIHLSPQEYRLVSYLMQQAGRVVSQQELTEQLYA 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             D   + N VE  + ++R+KL    G + + ++R  GY I+ +
Sbjct: 181 Q-DFERDSNAVEVLVGRVRRKL----GAELIQTRRGFGYLIEAD 219


>gi|227484933|ref|ZP_03915249.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227237088|gb|EEI87103.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 231

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G       S E    +    +  V+ ++  L   G    
Sbjct: 5   ILILDDEDPIRQFMKINLDYQGYQTVEAASGEEALRIFDEEQPAVAILDIMLP--GISGF 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR  S    +I +S        +   + G DD + KP + +E++ RV ++ RR+ 
Sbjct: 63  EVCEKIRTKSPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVKSLMRRVN 122

Query: 121 VSNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++            + GP  +    +      +   +   E  ILEY + N+GK + + +
Sbjct: 123 LNPTGSSNDDVKSLKDGPFTLDIYSKTFFKGDKEIDVTPTEFTILEYFIKNKGKAMTRDE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           I    +G  + + +  +V+ +I ++R K+       + +++    GY 
Sbjct: 183 IMKETWG-DNYSNDTKIVDVNIRRIRAKIEENPAKPEFIETVWGTGYR 229


>gi|157372224|ref|YP_001480213.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157323988|gb|ABV43085.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 220

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D  L+ DG  A     G +L+ F      +    SA  D   ++  L   G   L
Sbjct: 3   ILLIEDDKLIGDGIKAGLTRLGFNLDWFTDGLVGKNALESAPYDAVILD--LSLPGLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R  R A   VP++ ++   +L+  +    SG DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DLLRQWRQAGHDVPVLILTARDALEQRVSGLQSGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +   G +   +  R     GE   L  RE  +LE  + N+G+ +A+  I   +Y 
Sbjct: 121 GQLMPQLVHGNVVFDTATRSVSCNGEPVTLTPRELAVLELFLHNKGRVLARPLIQEKLYN 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            +D+ V  N VE HI  LR+KL N      + +   +GY++  N
Sbjct: 181 -WDDEVSSNAVEVHIHHLRRKLGNGF----IRTIHGVGYTLGDN 219


>gi|15895992|ref|NP_349341.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025771|gb|AAK80681.1|AE007771_1 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding) [Clostridium acetobutylicum ATCC 824]
 gi|325510145|gb|ADZ21781.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding) [Clostridium acetobutylicum EA 2018]
          Length = 225

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 98/227 (43%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +    L   +    +   S      +      D+  ++  L   G    
Sbjct: 4   ILIVEDDAKINEMIQTLLIKNKYMAKAVFSGTEALLVLEKESFDLILLDLMLP--GLSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   I    Q+P+I +S    L T L     G DD + KP ++ E++ R+ A+ RR+  
Sbjct: 62  QVLTKINEQFQIPIICVSAKDDLDTKLGMIRDGADDYITKPFNNEELIVRIGAVLRRMNK 121

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  NR     + + S+     +  E   L  +E +ILE L++N  K   K  IF +
Sbjct: 122 GTSIDKTNRFTFKDLVLDSENHIVTINNEPIELTVKEYKILELLISNPKKVFTKQNIFES 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   +  ++E VV  H+S LR KL  K G   + +   +GY +  N
Sbjct: 182 VWSE-EYILDERVVTVHVSNLRNKL--KHGDTYIKTVWGIGYKMQDN 225


>gi|116053034|ref|YP_793353.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588255|gb|ABJ14270.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 229

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 12/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D     +      G+ G +++         +L    R D+  ++  L   G    
Sbjct: 3   ILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLP--GLDGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-----IY 116
           ++  ++R    VP++ ++    LQ  +   + G DD + KP    E+L R+       + 
Sbjct: 61  QIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVV 120

Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R       + +   + +    R    QG+V  L  +E  +L  LM   G+ +++T I S 
Sbjct: 121 R----EAEQVQLADLHLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASE 176

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ + +   + NVV+  I +LR K+ N      + + R +GY  +
Sbjct: 177 VWDM-NFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCE 220


>gi|15608043|ref|NP_215418.1| two component response transcriptional regulatory protein PRRA
           [Mycobacterium tuberculosis H37Rv]
 gi|15840322|ref|NP_335359.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|31792091|ref|NP_854584.1| two component response transcriptional regulatory protein PRRA
           [Mycobacterium bovis AF2122/97]
 gi|121636826|ref|YP_977049.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660681|ref|YP_001282204.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium tuberculosis H37Ra]
 gi|148822112|ref|YP_001286866.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis F11]
 gi|215402702|ref|ZP_03414883.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis 02_1987]
 gi|215410489|ref|ZP_03419297.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis 94_M4241A]
 gi|215426171|ref|ZP_03424090.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T92]
 gi|215429761|ref|ZP_03427680.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis EAS054]
 gi|215445046|ref|ZP_03431798.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T85]
 gi|218752567|ref|ZP_03531363.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis GM 1503]
 gi|224989297|ref|YP_002643984.1| two component response transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800073|ref|YP_003033074.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254231209|ref|ZP_04924536.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis C]
 gi|254363833|ref|ZP_04979879.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549881|ref|ZP_05140328.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185800|ref|ZP_05763274.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199923|ref|ZP_05767414.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T46]
 gi|260204107|ref|ZP_05771598.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis K85]
 gi|289442314|ref|ZP_06432058.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T46]
 gi|289446470|ref|ZP_06436214.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555315|ref|ZP_06444525.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289573530|ref|ZP_06453757.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis K85]
 gi|289744634|ref|ZP_06504012.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 02_1987]
 gi|289749425|ref|ZP_06508803.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T92]
 gi|289752958|ref|ZP_06512336.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis EAS054]
 gi|289756989|ref|ZP_06516367.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T85]
 gi|289761037|ref|ZP_06520415.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis GM 1503]
 gi|294996384|ref|ZP_06802075.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis 210]
 gi|297633422|ref|ZP_06951202.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730407|ref|ZP_06959525.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN R506]
 gi|298524395|ref|ZP_07011804.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306775029|ref|ZP_07413366.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu001]
 gi|306782056|ref|ZP_07420393.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu002]
 gi|306783577|ref|ZP_07421899.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu003]
 gi|306787941|ref|ZP_07426263.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu004]
 gi|306792278|ref|ZP_07430580.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu005]
 gi|306796677|ref|ZP_07434979.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu006]
 gi|306802565|ref|ZP_07439233.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu008]
 gi|306806745|ref|ZP_07443413.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu007]
 gi|306966942|ref|ZP_07479603.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu009]
 gi|306971137|ref|ZP_07483798.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu010]
 gi|307078865|ref|ZP_07488035.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu011]
 gi|307083424|ref|ZP_07492537.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu012]
 gi|313657734|ref|ZP_07814614.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN V2475]
 gi|1314043|emb|CAA97378.1| TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA
           [Mycobacterium tuberculosis H37Rv]
 gi|13880485|gb|AAK45173.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|31617679|emb|CAD93788.1| TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA
           [Mycobacterium bovis AF2122/97]
 gi|121492473|emb|CAL70941.1| Two component response transcriptional regulatory protein prrA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600268|gb|EAY59278.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis C]
 gi|134149347|gb|EBA41392.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504833|gb|ABQ72642.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium tuberculosis H37Ra]
 gi|148720639|gb|ABR05264.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis F11]
 gi|224772410|dbj|BAH25216.1| two component response transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321576|gb|ACT26179.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415233|gb|EFD12473.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T46]
 gi|289419428|gb|EFD16629.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289439947|gb|EFD22440.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289537961|gb|EFD42539.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis K85]
 gi|289685162|gb|EFD52650.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 02_1987]
 gi|289690012|gb|EFD57441.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T92]
 gi|289693545|gb|EFD60974.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis EAS054]
 gi|289708543|gb|EFD72559.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis GM 1503]
 gi|289712553|gb|EFD76565.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T85]
 gi|298494189|gb|EFI29483.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308216381|gb|EFO75780.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325287|gb|EFP14138.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331580|gb|EFP20431.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335393|gb|EFP24244.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308339198|gb|EFP28049.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308342935|gb|EFP31786.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308346761|gb|EFP35612.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308350676|gb|EFP39527.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355337|gb|EFP44188.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359275|gb|EFP48126.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363185|gb|EFP52036.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308366841|gb|EFP55692.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu012]
 gi|323720612|gb|EGB29690.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904877|gb|EGE51810.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis W-148]
 gi|328459812|gb|AEB05235.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 236

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 21  DDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLI 76
           + G+ L GF    +++  E L+S+      AI   +       + +   +RA  + VP+ 
Sbjct: 27  ERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 86

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIR 132
            +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+     GP+ 
Sbjct: 87  VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLE 146

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+ 
Sbjct: 147 VDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVDV 205

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I  LR+KL    G   + + R +G+ +
Sbjct: 206 FIGYLRRKLEAGGGPRLLHTVRGVGFVL 233


>gi|317047328|ref|YP_004114976.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316948945|gb|ADU68420.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 224

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++         +G+ +     L+      ++ + D+  ++  L        
Sbjct: 4   ILIVEDEKEIRRFVRLALEGEGLKIVEAEQLQRGLIEAATRKPDLVILDLGLPD--GDGN 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R +R  S +P+I +S     Q  +   D+G DD + KP    E+LARV    RR + 
Sbjct: 62  DFIREVRQWSSMPVIVLSARTDEQDKIAALDAGADDYLTKPFGIGELLARVRVALRRHQG 121

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S  +     G + V    R     GE   L   E R+L  L+ N GK + + Q+ + ++G
Sbjct: 122 SQPDPVLSFGEVTVDLAARRVLRSGEEVHLTPTEFRLLSLLLNNAGKVLTQRQLLNQVWG 181

Query: 180 LFDEAVE-ENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
               AVE  + +  ++  LR+KL  N    + + ++  +GY  
Sbjct: 182 PN--AVEHSHYLRIYMGHLRQKLEANPTQPNHLLTETGIGYRF 222


>gi|306819943|ref|ZP_07453594.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551979|gb|EFM39919.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 224

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +  +A+      S++     E   +   +   D   ++  +       +
Sbjct: 3   ILLVEDERELSNALVAILTRSNYSVDPVYDGEDALYYLETENYDAVILDIMIP--KIDGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + IR     +P+I ++    +   +   DSG DD + KP   +E+LAR+ A+ RR  
Sbjct: 61  EVLKTIRKEGNKIPVIMLTAKSEIDDRVVGLDSGADDYLTKPFASKELLARLRALTRRGE 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++ N  + G I +     +       F L  +E +++E LM N+ + +   +    I+G
Sbjct: 121 QLTENIVKVGNISLNRSSFELFSDSGSFRLANKEYQMIEMLMVNQNQLIPTEKFMERIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D   E NVV  HIS LRKKL+       + + R +GYS++
Sbjct: 181 -YDSEAEINVVWVHISFLRKKLQQLKANIQIKANRNMGYSLE 221


>gi|256833090|ref|YP_003161817.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686621|gb|ACV09514.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 226

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 88/224 (39%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +      G +G ++        +  +  +   D+  ++  L       LE
Sbjct: 5   LLAEDDPAISEPLARALGREGYNV--VVQGTGQGAIDHAGAADLVVLDLGLPD--MDGLE 60

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR      P++ ++        +   D+G DD V KP    E+LARV A+ RR   
Sbjct: 61  VARAIRQKGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHG 120

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +       ++V          G    L  +E  +L  L++  G  V +  +   ++
Sbjct: 121 DPTESEEITAQDVKVDVAAHRAFQDGRELHLTTKEFELLRVLVSQAGSVVGRDILMREVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           G  +       ++ H+S LR+KL  +      + + R LG+  +
Sbjct: 181 G-SEPIGSTKTLDMHVSWLRRKLNDDANNPRYITTVRGLGFRFE 223


>gi|187928825|ref|YP_001899312.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725715|gb|ACD26880.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 228

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 99/223 (44%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +           + G  ++   +    + L  +   D+  ++  L        
Sbjct: 3   LLVVEDESKTGQYLRQGLTEAGFVVDLVGNGLDGQHLALNESYDLIILDVMLPD--LDGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            +   +RA  S VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RILLSLRAAESAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +++  +R + G + +    R     G    L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 VQMGLDRIQVGDLVLDLSRRRASRGGRRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV++  I +LR K+ +      + + R +GY ++
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDDFDAKLIQTVRGMGYVLE 222


>gi|117922448|ref|YP_871640.1| osmolarity response regulator [Shewanella sp. ANA-3]
 gi|117614780|gb|ABK50234.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 241

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R   S +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQI 125

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 QDVPGAPAQQEAEISFGEFSLDLATREMYHGNEAIALTSGEFAVLKVLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|320529002|ref|ZP_08030094.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|320138632|gb|EFW30522.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 231

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   +      +   + +++E   + +      +    D+  ++  +   GE  ++
Sbjct: 10  LLAEDDLRLGKLIQYMLEQNDITVEWVTNGDDIYEYATYTEYDILILDWMMP--GENGVD 67

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
               +R       ++ ++   S++  +   D+G DD + KP    E+LAR+ A+ RR   
Sbjct: 68  ACARLRKSGYDRAILMLTARDSVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRSTQ 127

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K+ +   E G  R+       E  G++  L  RE ++ + L  N G  V +  I   I+G
Sbjct: 128 KIQHEVDEIGGFRLNRTANILEKNGKMIQLSPREFQLFDLLAQNIGIVVPRDIILDRIWG 187

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L +  V  N ++S++  LRKKL      + + + R +GY ++
Sbjct: 188 L-ESDVSSNNIDSYMKMLRKKLDAASEGEAIKTIRGVGYKLE 228


>gi|264676273|ref|YP_003276179.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533391|ref|ZP_07046773.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262206785|gb|ACY30883.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718597|gb|EFI59572.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 249

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M ++++D   +     A    DG+ +      E         R D+  ++  L       
Sbjct: 21  MVLVVEDEPGIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHLPKV--DG 78

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R+IR  S VP+I ++        L     G DD V KP +  E++ARV A+ RR +
Sbjct: 79  VDVLRMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQ 138

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGE-----VFPLPRRERRILEYLMANRGKRVAKT 171
                       GPI +  +     V  +        L   E R+L  L A   +  ++ 
Sbjct: 139 AKPAPVAAPIRVGPIEIDVEAHSAAVYDDAGQAVPLALTLTEFRLLACLAAQPRRCFSRA 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      L +    E V++SH+SKLR+KL+       +++ R +GY +
Sbjct: 199 YLIENC--LPESDALERVIDSHLSKLRRKLQLAGQDGLIETVRGIGYRL 245


>gi|255525555|ref|ZP_05392490.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255510739|gb|EET87044.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 228

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 98/219 (44%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G+ +    +LE    + ++   D+  ++  L        
Sbjct: 4   ILLVEDDESLNRGISFKLNKEGMKVFAAKNLEEGREIFNNTSLDLIILDIGLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120
           E    IR  S V +I ++        +   D G DD + KP     +++++ A + R   
Sbjct: 62  EFCSEIRKQSGVLIIFLTACDEEVDIVTGLDMGADDYITKPFSFMVLMSKINALLRRNSS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++++  +G I  + +        +   L + E R+L+YLM N G+ + K Q+ + ++ L
Sbjct: 122 SNSSKIVSGSIAFYPEEMKVLKDEKQIDLSKTELRLLKYLMLNSGQIIKKEQLLNELWDL 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
             + V+ N +  +I +LR+K+  N      + + R +GY
Sbjct: 182 DGDFVDSNTIAVNIRRLREKIEVNPSKPKYIKTVRGIGY 220


>gi|163752506|ref|ZP_02159693.1| transcriptional regulatory protein PhoP [Shewanella benthica KT99]
 gi|161327598|gb|EDP98795.1| transcriptional regulatory protein PhoP [Shewanella benthica KT99]
          Length = 224

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 106/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++         + G  ++   + +   +  ++   DV+ I+  L  +    +
Sbjct: 3   ILVVEDDPILSHHLQVQLSELGNQVQVALTAKEGFYQATNYPIDVAIIDLGLPDQ--DGM 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L   +R A  + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLIENLRDAGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +  +G + +    +   ++G    +   E  ILEYLM +  + VAK ++   IYG
Sbjct: 121 GFVRPKITSGDLELDLAAKQLSMKGVPMDITAFEYLILEYLMRHCHEVVAKQRLLDVIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL  +   +P+ + R  GY  +
Sbjct: 181 --DKEGDPNTIEVMVSRLRKKLTKEGLENPIATIRGQGYKFN 220


>gi|13633959|sp|Q9ZHD3|SILR_SALTY RecName: Full=Probable transcriptional regulatory protein silR
 gi|4206626|gb|AAD11745.1| putative transcriptional regulator responder SilR [Salmonella
           enterica subsp. enterica serovar Typhimurium]
          Length = 228

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D     +       + G  ++  ++      L  +A  D+  ++  L        
Sbjct: 3   ILIVEDDIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDV--NGW 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           ++ R++R A   +P++ ++   +++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI-FSAI 177
             ++ ++ +   + V    R     G    L  +E  +LE+ + ++G+ + ++ I F  +
Sbjct: 121 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIAFFMV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +       + N ++  + +LR K+ N  G     + R +GY ++
Sbjct: 181 WVHEFLTADTNAIDVAVKRLRAKIDNDYGTKLNQTVRGVGYMLE 224


>gi|311748341|ref|ZP_07722126.1| DNA-binding response regulator YycF [Algoriphagus sp. PR1]
 gi|311302774|gb|EAZ81098.2| DNA-binding response regulator YycF [Algoriphagus sp. PR1]
          Length = 229

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 13/225 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +           + S    DV  ++  +   G+  +E
Sbjct: 10  LVVDDEPDIVEILKYNLQKEGYEVSTAEDGVKAVKVASKFHPDVILLDIMMP--GQDGVE 67

Query: 63  LPRIIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
               IR   ++    +I ++      + +  FD G DD + KPI  R +++R+AA++RR 
Sbjct: 68  TCLQIRQIPELKNAFIIFLTARMEEYSEVAAFDVGADDYITKPIKPRALMSRIAALFRRE 127

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +    + +   + +       +  G+   LP++E  +L +L  N     ++ ++   
Sbjct: 128 LKKEQEQVQIKIKDLTIDRGSYTIDKSGKTITLPKKEFELLYFLAKNPNMVFSRDELLQN 187

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+G  D  V    V+ HI K+R+K+    G D + + + +GY  D
Sbjct: 188 IWGA-DVFVLARTVDVHIRKVREKI----GDDYITTVKGVGYKFD 227


>gi|258620439|ref|ZP_05715477.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM573]
 gi|258587318|gb|EEW12029.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM573]
          Length = 228

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E      +  + D+  ++  +       +
Sbjct: 4   ILLIDDDTELTSLLTEVLQYEGFDISEANDGEAGLAAVTD-QIDLILLDVMMP--KLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E  + +R     P++ ++        +   + G DD + KP   RE+LAR+ AI RR + 
Sbjct: 61  ETLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQN 120

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  E   I+V+   ++   QG++  L   E  +L + + + G+ + K  +   
Sbjct: 121 ALAPKHTDVIECQDIQVYPGKQEAYCQGQLLDLTTTEFALLTHFVQSPGETLTKEMLSIE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           + G    A +   ++ H+S LRKKL  +L G   + + R  GY
Sbjct: 181 VLGKRLAAFD-RAIDMHVSNLRKKLPERLDGKARIKTLRGRGY 222


>gi|219848756|ref|YP_002463189.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543015|gb|ACL24753.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 227

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    S      L    R D+  ++  L       L
Sbjct: 7   ILVVDDDDGLQELVRVRLEQEGYRVLQTISGIEAISLIRQQRPDLVILDIMLPD--LDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  +  P++ ++   + +  +   D G DD + KP ++ E+LAR+  + RR+  
Sbjct: 65  TVCQRVREFASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRRVPS 124

Query: 122 SNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N     G   I +    R+  V+G +  L   E ++L  L    G  V   Q+  A++G
Sbjct: 125 VNRPLTVGNGLITINPRQREVRVRGTIIDLTPTEYQLLMVLAEQAGAVVTHEQLLRAVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +   + + ++ +I  LR+K+  +      + ++  +GY +
Sbjct: 185 N-EPNRDNDYLKVYIWHLRRKIEFDPRQPQLLLTEWGVGYRL 225


>gi|117620485|ref|YP_855300.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561892|gb|ABK38840.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 226

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G +     + +       S       ++  L        
Sbjct: 3   ILLVDDDLELGTMLSEYLSGEGFATTHVLTGKSGVQHALSGNYAAVVLDIMLPD--LNGS 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S++P+I ++        +   + G DD V KP + RE++AR+ A+ RR++ 
Sbjct: 61  EVLRQIRRDSRIPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRVEP 120

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +            G + +    R    Q +   L   E  +LE L+ +  + V+K ++  
Sbjct: 121 APANPGKVQGLRLGELVLSPASRQCHWQAQPLELTATEFNLLELLLRSPERVVSKDELSL 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              G   E  +   V+ HI  +R+KL+   G    +++ R +GY +
Sbjct: 181 HGLGRPREPYD-RSVDVHICNIRQKLQALAGEAVGIETVRSIGYRL 225


>gi|325273594|ref|ZP_08139816.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324101272|gb|EGB98896.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A   +       + G  ++  ++      L       +  ++  L        +
Sbjct: 4   LVVEDEAKTAEYLQQGLTESGYIVDRASNGVDALHLFQHNTYGLVILDVNLPKV--DGWD 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           +   IR  S+V +I ++    L   L   D G DD + KP    E+LAR+ ++ RR    
Sbjct: 62  VLDTIRKTSRVRIIMLTGRGRLHDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGDKV 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V +       + +               L  +E  +L  LM++ G+ + ++QI S ++ +
Sbjct: 122 VDHPTLRVADLELDPGRHRAFRGDLRVELTTKEFALLRLLMSHPGEALTRSQIISLVWDM 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NV++  I +LR K+ +      + + R +GY I+
Sbjct: 182 -NFDCDTNVIDVAIRRLRAKIDDPFENKLIHTLRGVGYVIE 221


>gi|261346810|ref|ZP_05974454.1| transcriptional regulatory protein CpxR [Providencia rustigianii
           DSM 4541]
 gi|282565210|gb|EFB70745.1| transcriptional regulatory protein CpxR [Providencia rustigianii
           DSM 4541]
          Length = 232

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 16/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +L+DD   +      L   +G ++    + + E+ LQ   +  D+  ++  +  K    
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFNV--VIAYDGEQALQQIDSSIDLLLLDVMMPKK--NG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ A+ RR  
Sbjct: 60  IETLKELRQLHQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSN 119

Query: 121 VSNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            S             +   +++    ++     E+  L   E  +L  L  + G+ V++ 
Sbjct: 120 WSEQTQGDNSNTPTLQVDKLQLNPGRQEASFDNEILDLTGTEFTLLYLLAQHLGQVVSRE 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
            +   + G      +   ++ HIS LR+KL     G     + R  GY
Sbjct: 180 HLSQEVLGKRLTPFD-RAIDMHISNLRRKLPERTDGQPWFKTLRGRGY 226


>gi|212692570|ref|ZP_03300698.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855]
 gi|237709115|ref|ZP_04539596.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|237724402|ref|ZP_04554883.1| two-component system response regulator [Bacteroides sp. D4]
 gi|265752640|ref|ZP_06088209.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
 gi|212664855|gb|EEB25427.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855]
 gi|229437271|gb|EEO47348.1| two-component system response regulator [Bacteroides dorei
           5_1_36/D4]
 gi|229456811|gb|EEO62532.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|263235826|gb|EEZ21321.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
          Length = 224

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         + G  +           L  +   D+  ++  +   G   L
Sbjct: 4   IILVEDEINIASFIERGLREFGHEVSVVYDGNAGWELLQNESFDLLILDIIMP--GMNGL 61

Query: 62  ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL R+ R       P++ ++   +    +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 62  ELCRMYRQRFGYHSPVVMLTALGTTDDIVKGLDAGADDYLVKPFSFQELEARIKALLRRS 121

Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K V   +   G + +    R          L  +E R+LEY + ++   +++  +   ++
Sbjct: 122 KEVPVQQLVCGDLILDCTLRRARRGNMDIDLTVKEYRLLEYFLLHQRAVLSRLTLLRDVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +     NVV+ +++ LR K+        + +   +GY +
Sbjct: 182 DK-NFDTNTNVVDVYVNYLRAKIDKGFEDKLIHTVVGVGYMM 222


>gi|163785606|ref|ZP_02180161.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879126|gb|EDP73075.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 203

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 94/203 (46%), Gaps = 10/203 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +++D   + +  +     +G  ++ F S +       + + D+  ++  L       L
Sbjct: 4   IYVVEDDEDINELLVYNLQKEGNKVKSFYSGKDALSSLENEKPDLILLDIMLPD--IDGL 61

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ + +++     ++P+I ++   +    +   + G DD + KP   RE+LAR+ A+ RR
Sbjct: 62  EVCKTVKSDPVKREIPIIMLTAKSTEIDKIVGLELGADDYITKPFSFRELLARIKAVLRR 121

Query: 119 LKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
            +  +++     + G + +     + ++ G+   L  +E ++L  L+ ++G+ +++  + 
Sbjct: 122 CQNKSSKNVDVIKIGELEINLAKFEVKIHGKPLNLTTKEFKLLMNLINSKGRVLSRDYLL 181

Query: 175 SAIYGLFDEAVEENVVESHISKL 197
             ++   +  V +  V+ HI  L
Sbjct: 182 DTVW-QNEPDVFDRTVDVHIKNL 203


>gi|126698063|ref|YP_001086960.1| two-component response regulator [Clostridium difficile 630]
 gi|115249500|emb|CAJ67315.1| Two-component response regulator [Clostridium difficile]
          Length = 224

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            +++DD   +       F  +G  +  + +   ++ L+  ++  D+  ++  +       
Sbjct: 5   ILVVDDEEGIITLLKDYFEMNGYEV--YTAQSGKDALKKISKNPDIILLDINMPE--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+   IR +   P++ ++        ++ F +G DD + KP    E+ ARV+A  RR +
Sbjct: 61  IEVCNRIRDYISCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRREQ 120

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +N+ +      + +  + R   +      L ++E  I+E L  N G+   K +I+  +
Sbjct: 121 RKSNQTKIKFYNDLTIDYEKRLICIYNNQISLSKKEFDIVELLSMNPGQVFDKEKIYDRV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +G ++     +V+  HI K+R KL      + +++   +GY 
Sbjct: 181 WG-YNSNGNSDVIMEHIRKIRIKLSKHTLENYIETVWGVGYK 221


>gi|110833129|ref|YP_691988.1| osmolarity response regulator [Alcanivorax borkumensis SK2]
 gi|110646240|emb|CAL15716.1| DNA-binding response regulator OmpR [Alcanivorax borkumensis SK2]
          Length = 236

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G +++     E  +   S     +  ++  L   GE  L
Sbjct: 8   ILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQMDRALSRELYSLMVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R    + P+I ++        ++  D+G DD + KP + +E+ AR+ A+ RR  
Sbjct: 66  SICRRLREAENIMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRRHV 125

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           GP  +    R     G+   L   E  +L+ L+ N  + + + +
Sbjct: 126 RELPGAPSKEEGSVTFGPWLLDLGNRTLTRDGDPQSLTTGEFAVLKALLQNPREPLTRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + S   G    A+E   ++  +S+LR+ L +       + +   +GY  
Sbjct: 186 LMSLARGREWSAME-RSIDVQVSRLRRLLEDDPSKPRYIQTVWGVGYVF 233


>gi|74317305|ref|YP_315045.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056800|gb|AAZ97240.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 232

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D      G++G+           +   +S+R D+  ++  L   GE  L
Sbjct: 6   ILVVDDDQELLDMVCRYLGENGLDAHAAADSVHMDAWLASSRPDLIVLDVMLP--GEDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +++   VP++ +S   S    +   + G DD + KP H RE+LAR+ A  RR   
Sbjct: 64  SVVKRLKSRLDVPVLMLSARSSDVDRILGLEMGADDYLTKPFHPRELLARIHARLRRSPA 123

Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +  E G  R+    RD    G+   L   +  +L  LM +  + + +TQ+   +  
Sbjct: 124 PRQEDALEAGSFRLDFVRRDAYKHGQPLALSTADFSLLSLLMRHSHRVLDRTQLVD-LAS 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
             +       ++  +++LR+K+ +       + + R  GY
Sbjct: 183 AMERMPFNRSIDVRVARLRRKIEDDPAQPRYIRTVRGSGY 222


>gi|312882874|ref|ZP_07742606.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369393|gb|EFP96913.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 239

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRSLLERYLSEQGFHVRSVANGEQMDRLLTRETFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R  +   P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRHVNNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 TELPGAPSTEESVVEFGEFRLNLGTREMFRGEESMPLTSGEFAVLKALVTNSREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|257063841|ref|YP_003143513.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791494|gb|ACV22164.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 234

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++D        +G  +    +    E L+   R+ +  +   ++ +G    
Sbjct: 5   ILVVDDDASIRDAVAIYMKREGHDV--VQAKNGVEALEVFNRQHLDLVILDVMMEGYNGF 62

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR     +P+I +S    L      F  G DD + KP    E++ R  +  R   
Sbjct: 63  EVCSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLRNRS 122

Query: 121 VSNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                AE            G + +  D R   V      L  +E  IL  +         
Sbjct: 123 PQEAEAEPQAGGGGSVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVVFT 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           + QI  +++G +       VV   I KLR+K+         + ++  +GY I
Sbjct: 183 RQQILDSVWG-YGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGYRI 233


>gi|269926598|ref|YP_003323221.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790258|gb|ACZ42399.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +           G ++  +  +  EE +    + D   +   L       L
Sbjct: 6   IVVVDDEKSILKYISQQLKAKGYNV--YPGMNGEEAISLVEQHDPDLLLLDLKMPVMNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ + +R  S+VP+I IS Y  ++  ++  +SG DD V KP H  E+ ARV    RR   
Sbjct: 64  EVCKRLREWSKVPIIVISAYDDVEYVVEALNSGADDYVRKPFHQEELFARVKTQLRRAEE 123

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +   +    GP+ +    R   +  E   L   E  ILE L+ N GK +    + + 
Sbjct: 124 RPSQQVQSVFRCGPLTINFSRRQVTLNDEEVKLTPTEYSILEQLVQNAGKVMTHQMLLNR 183

Query: 177 IYGLFDEAVEEN-VVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++G   E  EEN  +  +I +LR+KL     G   + +++ +GY  
Sbjct: 184 VWGP--EYTEENEYLRVYIGRLRRKLDPGPNGPKFIVTEQGVGYRF 227


>gi|226305622|ref|YP_002765582.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229489559|ref|ZP_04383422.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226184739|dbj|BAH32843.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229323656|gb|EEN89414.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 226

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   +        G +G S+    +             D+  ++  L   G   LE
Sbjct: 5   LLAEDDEAIAAPLSRALGREGYSVTVEPTGPAALQQALEGDFDLLILDLGLP--GMDGLE 62

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRAH + + ++ ++        +   D+G DD V+KP    E++ARV A+ RR   
Sbjct: 63  VCRQIRAHRTSLAVLMLTARTDEVDFVVGLDAGADDYVSKPFRLAELMARVRALLRRHGG 122

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E G IR+    R   V G    L  +E  +L  L+ + G+ V++  I   ++G 
Sbjct: 123 REDTIVEVGGIRLEPAARRVLVNGSEIALANKEYELLRVLLEHAGEVVSRDTILREVWGD 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
             E      ++ H+S LR+K+ ++       + + R +G+ I+
Sbjct: 183 V-ELRGSKTLDMHMSWLRRKIGDEGPAVERRIATVRGVGFRIN 224


>gi|118468513|ref|YP_889895.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169800|gb|ABK70696.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis str.
           MC2 155]
          Length = 236

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 9/208 (4%)

Query: 21  DDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLI 76
           + G+ L GF+   +++  E L+S+      AI   +       + +   +RA  + VP+ 
Sbjct: 27  ERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 86

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIR 132
            +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+   + GP+ 
Sbjct: 87  VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSSATFSSETIQVGPLE 146

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+ 
Sbjct: 147 VDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVDV 205

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I  LR+KL        + + R +G+ +
Sbjct: 206 FIGYLRRKLEAGGAPRLLHTVRGVGFVL 233


>gi|186476807|ref|YP_001858277.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184193266|gb|ACC71231.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 232

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           VLI+D   ++    A    +G+++    + +      ++ + D+  ++  L       L+
Sbjct: 9   VLIEDEQQIRRFVRASLEGEGMTVYDAPTGKQGLIEAATRKPDLVIVDLGLPDT--DGLD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R  S++P+I +S        +   D+G DD + KP    E+ AR+ A  RR    
Sbjct: 67  VIRELRGWSELPIIVLSARTQESEKVAALDAGADDYLTKPFGVSELFARIRAHLRRRNQG 126

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 + + G + V    R     GE   L   E R+L  L+ + G+ +   Q+   ++
Sbjct: 127 GPAETPQVQFGGVTVDLALRQVSRDGEPVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G        + +  +++ LR+KL R+    + + ++  +GY +
Sbjct: 187 GPSHVE-SHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|318080665|ref|ZP_07987997.1| two component system response regulator [Streptomyces sp. SA3_actF]
          Length = 253

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61
           +++DD   + +        +G  +                R D   ++  L    G  VL
Sbjct: 22  LVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGLSVL 81

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            L R  R     P++ +++  +    +    +G D+ V+KP    E++AR+  + RR   
Sbjct: 82  HLMR--REQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAGA 139

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S +    G + +  D  +    G    L   E  +L YLM N  + ++K QI   ++
Sbjct: 140 GRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 199

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + NVVE +IS LR+K+ ++     + ++R  GY I
Sbjct: 200 -SYDFGGQANVVELYISYLRRKI-DRGREPMIHTRRGAGYLI 239


>gi|300857011|ref|YP_003781995.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300437126|gb|ADK16893.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 215

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 17  ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLI 76
               ++G  +  F +    + ++    E++  +   ++  G    ++   IR    +P+I
Sbjct: 3   VYLINEGYKV--FKAYNGIDGIKIINEENIHLVILDIMMPGIDGYQVCMKIRKDYNIPII 60

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---------KVSNNRAE 127
            +S        +     G DD + KP +  E++ARV +  RR              +  E
Sbjct: 61  MLSAKSQDMDKIQGLSIGADDYMTKPFNPMELIARVKSQIRRYIFLNEKSNKTSDTDIVE 120

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
              I +          G    L   E  IL  L  N GK  +  +IF  I+         
Sbjct: 121 FKDITINRKNHKVCKLGTELKLTPIEYEILLLLANNLGKVFSAEEIFKEIWKEKYLEGN- 179

Query: 188 NVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           N V  H+ +LR+K+  N      +++   +GY I+
Sbjct: 180 NTVMVHMWRLREKVEQNPKEPKIIETVWGVGYKIE 214


>gi|170755428|ref|YP_001779912.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226947489|ref|YP_002802580.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|169120640|gb|ACA44476.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226843713|gb|ACO86379.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|322804530|emb|CBZ02081.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 225

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    S       QS    ++  ++  L        
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPNLLILDLMLPD--ISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++   S  + L+ +  G DD + KP   ++++A+V A+ +R+K 
Sbjct: 63  NVCERIRKESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N      + +    +  E   +   L   E +IL  L  N  K  ++ ++   I  
Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNKIFSREELMDYI-S 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +  + + ++++HI  +R KL         + + R +GY  + 
Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225


>gi|90411546|ref|ZP_01219556.1| Putative transcriptional regulator [Photobacterium profundum 3TCK]
 gi|90327436|gb|EAS43789.1| Putative transcriptional regulator [Photobacterium profundum 3TCK]
          Length = 225

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         +   + +  N+         S   D+  ++  L        
Sbjct: 3   ILIIEDETKLGKYLQLGLNESSFTTDWVNNGLDGLHQAMSPEYDLILLDVMLPD--LDGW 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   I+A+    P+I ++   S++  +     G DD + KP    E++AR+    R+ +
Sbjct: 61  EILTKIKAYYPTRPIIMLTARDSVEDRVKGLQLGADDYLVKPFAFIELIARIQNQVRKNE 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +        + +    R      +   L  +E  +LE L++   + ++K  I S ++
Sbjct: 121 NVATKTTLTIADLHIDLLRRRVTRNDQHIDLTAKEFLLLELLVSREKEVLSKAFIASKVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LRKK+ +   F  + + R +GY ++
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRKKVDDPFEFKLIHTLRGMGYVME 222


>gi|319780627|ref|YP_004140103.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166515|gb|ADV10053.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 224

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D     D  +    + G   +   +     +  +  + DV   +  +   G   L
Sbjct: 3   LLLVEDDHRTADYIVRGLTEAGHVCDLLRNGHDGLFAATRGKYDVIVADRMIP--GLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + +RA   + P I ++    +   ++  ++G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  SMVKAVRAAGVRTPAIFLTSVGGIDDRVEGLEAGGDDYLVKPFAFSELLARINALGRRPA 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +          + +    R    +G+   L  RE  +LE LM   G+ + +T +   ++
Sbjct: 121 AQEQKTVLRVADLEMDLIMRRVTRRGQPIDLQPREFSLLEVLMRGEGRVITRTMLLERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             F      +VVE+HIS+LR K+        + + R  GYS+
Sbjct: 181 D-FHFDPRTSVVETHISRLRAKVDKPFETQLIHTVRNTGYSL 221


>gi|292490612|ref|YP_003526051.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291579207|gb|ADE13664.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 223

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 108/221 (48%), Gaps = 10/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   ++          G  ++  ++    E+L      +   ++  L  +    L+
Sbjct: 4   LLVEDDRELQKRLHRELTQQGFVVDTADNGVDAEFLGFEEPYEAVILDLGLPQR--SGLD 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R  R H ++VP++ ++   +    ++ F  G DD ++KP H  E+LAR+ A+ RR   
Sbjct: 62  VLRHWRDHDNRVPVLILTARDAWHEKVEGFKCGADDYLSKPFHTEELLARLQALIRRSQN 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   ++  +  + +  + +     G +  L   E R+L Y M + G+ ++K+++   +Y 
Sbjct: 122 RPHQSQLTSHSLTLDEERQCVHKDGHLIELTGTEFRLLRYFMLHPGRILSKSRLTEQVYA 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L D   + NV+E ++++LRKK    +G D + ++R  GY  
Sbjct: 182 L-DADKDSNVMEVYVNRLRKK----VGSDLIKTRRGQGYIF 217


>gi|332885785|gb|EGK06031.1| hypothetical protein HMPREF9456_02295 [Dysgonomonas mossii DSM
           22836]
          Length = 229

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + G  +      E  + L ++   D+   +  L        
Sbjct: 4   ILVVEDELRIAELLKKGLEEFGYIVTLAFDGEMGKRLVNNHIYDLIITDVILPH--INGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL + IRA H ++P+I ++   +    LD FDSG DD + KP   RE+ AR++ + +R  
Sbjct: 62  ELCKEIRAVHPEIPIIMLTALGTTDDKLDGFDSGADDYMVKPFDLRELNARISILLKRKN 121

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                V  +  E   I++  D +          L  +E  +L+Y+M N  + +++T+I  
Sbjct: 122 GVSATVKTDHLEYADIKLNLDNKTVTRGDREMRLTPKEFNLLQYMMLNPERVLSRTEISE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++         N ++ +I+ LR K+        + ++  LG+ +
Sbjct: 182 KVWDTH-FNTGTNFIDVYINYLRVKIDKGFDSKLIHTRPGLGFIL 225


>gi|251796056|ref|YP_003010787.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543682|gb|ACT00701.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 225

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   +         ++G  +           +    +  V  ++  +        
Sbjct: 6   LLLADDEPHIIQFLELGLLNEGFDIRTAQDGAAALQVAKEFQPHVLILDVMMPE--LNGF 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + ++     V +I ++    ++  +     G DD V KP    E+LAR+ A  R   
Sbjct: 64  EVCQAVKDTGANVAVIMLTAKDDIEDRVKGLTLGADDYVVKPFSFEELLARIKARLRNQF 123

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            S    A  GP RV    ++   Q +V  L   E  +L+Y++ N G  ++K QI  +++G
Sbjct: 124 PSLLGEATYGPFRVNDVKKELIYQDQVLELSPTEYELLKYIVQNNGIVLSKAQILDSVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +    EEN+VE +I  LR KL +K     + + R +GY +D
Sbjct: 184 -YRFGGEENIVEVYIRSLRDKLGDK-EHRLIRTLRGVGYRMD 223


>gi|121605634|ref|YP_982963.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594603|gb|ABM38042.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 231

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD A +     A F      ++   +L     L+   +  + A    ++       
Sbjct: 4   ILLIDDDAQLGGPLAAYFAR--FDMQLVCALRPGAGLELIRQGGLDAAILDVMLPEMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L R+IR  S +P+I ++    +   +   + G DD V KP   RE++ARV  + RR   
Sbjct: 62  ALCRLIRKESDIPVIMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTVLRRRVA 121

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R     + +    R  + QGE+  L   E  +L  L    G+  ++  I
Sbjct: 122 PPAAITPPDTARLVFDGLVLDPVTRTVQRQGELLELTSTEFDLLHLLAREAGRVFSRDDI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            S + G  +  +    V+  +S+LRKKL      D + + R  GYS+
Sbjct: 182 LSRLRG-HEAELYTRAVDIVVSRLRKKLEP---LDCIKTLRNAGYSL 224


>gi|134292766|ref|YP_001116502.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135923|gb|ABO57037.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 221

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +     A     G +++          L    R D+  ++A L   G    
Sbjct: 3   ILVVEDDAEIGAAIRARLTRLGHAVDHETDGATANSLLRVERFDLVVLDANLP--GLDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR  
Sbjct: 61  AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N+    G + +    R  E+ G+   L R+E  +LE L +   +  +K ++ + ++ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLF- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F      N VE +++++R+KL        + + R +GY I
Sbjct: 180 SFGNEPSANAVEQYVTRVRRKL--HGSSVEIRTARGMGYQI 218


>gi|34763104|ref|ZP_00144075.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887238|gb|EAA24338.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 227

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++          G  ++     E    L      DV  ++  L  K     
Sbjct: 7   ILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGIELFERNYYDVVLLDLMLPKK--SGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +  R  +  P+I I+   S+   ++  D G +D + KP    E+LAR+    R  + 
Sbjct: 65  ELCQEFRKLNNTPIIVITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 124

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S ++       I++    +   +  E   L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 125 SVDKQFYLEKDIKLDLSAKRVYLGEEEINLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   EE +V+ +I+ LRKK+   L    + + R  GY   +
Sbjct: 185 -YDFDGEEKIVDVYINSLRKKID--LDSKYIHTIRGFGYMFQY 224


>gi|260771990|ref|ZP_05880907.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260612857|gb|EEX38059.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 240

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R  +  +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRNANNLIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQV 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSAEDTIVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|163804112|ref|ZP_02197895.1| transcriptional regulator [Vibrio sp. AND4]
 gi|159172074|gb|EDP57030.1| transcriptional regulator [Vibrio sp. AND4]
          Length = 220

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 105/223 (47%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E  +     +      + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECLHVERISDVEPQWKKADLVILDRQLPD-GDSVQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            LP   +    VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  R    
Sbjct: 62  SLP-EWKKIKDVPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQLRAPDS 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + ++++ +T  + +    R+ + + E+  L R E  +L +L +N G+   + ++   +
Sbjct: 121 ADQDNSDKVKTADLEINRATREVKFKEEMITLTRTEFDLLLFLASNLGRVFTRDELLDHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 WG-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 218


>gi|209525726|ref|ZP_03274263.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209493895|gb|EDZ94213.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 774

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 104/231 (45%), Gaps = 24/231 (10%)

Query: 2   FVLIDDRA---------LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            +L+DD           L    Y+     DG S  G+N +E  E+        +  ++  
Sbjct: 3   ILLVDDDQYLNQQLSKSLKAHNYVVDIATDGES--GWNYIESFEY-------SLVILDIM 53

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L       + L R +R+H+ Q+P++ ++   S +  +   D+G DD + KPI   E++AR
Sbjct: 54  LP--KLNGIALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIAR 111

Query: 112 VAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ RR  +S       G + +     +   Q  V PL  +E  ++E  + +  +  + 
Sbjct: 112 MRALLRRATISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSY 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I   ++ + + A + N V +HI  LR KL++  G    +++   +GY I
Sbjct: 172 DSIIEHLWSIEEPAAD-NTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRI 221



 Score = 87.7 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D   + +   AL    G+ ++  N+      +   +  D+  I+  +       +
Sbjct: 488 IIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPH--YNGI 545

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L ++IR   +   +P++ ++++   +T  + F +G DD ++KP+   E++AR+ +   R
Sbjct: 546 DLCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHR 605

Query: 119 LKVSNNRAETGPIR 132
            ++  N AE   + 
Sbjct: 606 SRLWRNIAEIDTLT 619



 Score = 39.9 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D   ++ +  I      G+       +     +    +  +  +E       E  L
Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
            L   I   H ++P++  S   S    L     G    + KP+ 
Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMS 467


>gi|164687882|ref|ZP_02211910.1| hypothetical protein CLOBAR_01527 [Clostridium bartlettii DSM
           16795]
 gi|164603157|gb|EDQ96622.1| hypothetical protein CLOBAR_01527 [Clostridium bartlettii DSM
           16795]
          Length = 233

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 104/222 (46%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++         G  ++     EF   +    +++   +   +        
Sbjct: 14  IIIVEDDQIIREELQIFLSKYGYEIKA--PTEFNNIVDYILKQNADLVLLDINLPVFDGY 71

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++   S    L   + G DD V KP + + +LAR+AA+ +R  +
Sbjct: 72  FICREIRKTSEVPIIVVTSRDSEVDELMSMNLGADDFVTKPYNTQILLARIAALLKRSGM 131

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              SN+       ++           +   L + E +IL YL+ ++G+ V++  +   ++
Sbjct: 132 NSNSNSILTYKDFKLNLSNATVIYNDKNIELTKNEVKILSYLINHKGEIVSRELLMEHLW 191

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D  V+++ +  +I++LRKKL      + ++++R LGY +
Sbjct: 192 N-SDFFVDDSTLTVNITRLRKKLDEIGIKNVIETRRGLGYIM 232


>gi|253681042|ref|ZP_04861845.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562891|gb|EES92337.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 237

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 101/229 (44%), Gaps = 9/229 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +  G       +G  +   +S+E  +    +    +  I   ++       
Sbjct: 4   ILLIEDDITLSMGMKYALESEGFIIHTADSVESAKDSLKNLANVLKLILLDIMLPDGNGY 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + IR+ +  +P+I ++        +   D G DD + KP+  RE+++R+ A+ RR  
Sbjct: 64  DLCKYIRSKNLNIPIIFLTACDEEANIILGLDLGGDDYITKPVRIRELISRINAVLRRNS 123

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +     S +   +  ++++          E   L   E ++L  LM+N G  + +  +  
Sbjct: 124 ILSPPTSEHIITSKDLKLYPLKCKLLKHQEEISLTSIEYKLLLTLMSNSGNILTRDTLLE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223
            ++ L  + ++ N +  +I +LR+K+ +       + ++R +GY   WN
Sbjct: 184 KLWDLDGDFIDNNTLSVYIRRLREKIEDNPKSPSYILTQRGIGYK--WN 230


>gi|240172200|ref|ZP_04750859.1| two component response transcriptional regulatory protein prra
           [Mycobacterium kansasii ATCC 12478]
          Length = 233

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 21  DDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLI 76
           + G+ L GF    +++  E L+S+      AI   +       + +   +RA  + VP+ 
Sbjct: 24  ERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 83

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIR 132
            +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+     GP+ 
Sbjct: 84  VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLE 143

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+ 
Sbjct: 144 VDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVDV 202

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I  LR+KL    G   + + R +G+ +
Sbjct: 203 FIGYLRRKLEANGGPRLLHTVRGVGFVL 230


>gi|222081273|ref|YP_002540636.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725952|gb|ACM29041.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 241

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++      F D+G ++   ++             D   ++  L G G+  L+
Sbjct: 12  LVVDDDPRIRQMLTRYFEDEGYAVSTASNGLEMRACLQQENFDAILLDWVLPG-GKDGLD 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R IRA S VP+I ++    +   +   + G DD + KP H RE+ AR+ +I RR + +
Sbjct: 71  LAREIRAQSDVPIIMLTGRDDVVDRIVGIEVGADDYIAKPFHLREVHARLKSILRRRQPA 130

Query: 123 --------NNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   ++       ++ +  R     +G    L   E  IL     + G+ +++  +
Sbjct: 131 IRSPDKNPDDVIRFEGWQLDTGKRQLLAAEGHEIELTTGEFDILVVFARHAGRVLSRELL 190

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
                G   EA +   +++ I++LRKK+  +      + S R +GY  
Sbjct: 191 MDLTRGRNLEAFD-RTIDAQIARLRKKIETDPARPQLIKSIRGVGYVF 237


>gi|150008544|ref|YP_001303287.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|255014344|ref|ZP_05286470.1| two-component system response regulator [Bacteroides sp. 2_1_7]
 gi|256841439|ref|ZP_05546946.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|262383394|ref|ZP_06076530.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298376189|ref|ZP_06986145.1| DNA-binding response regulator [Bacteroides sp. 3_1_19]
 gi|301309445|ref|ZP_07215387.1| DNA-binding response regulator [Bacteroides sp. 20_3]
 gi|149936968|gb|ABR43665.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256737282|gb|EEU50609.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|262294292|gb|EEY82224.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298267226|gb|EFI08883.1| DNA-binding response regulator [Bacteroides sp. 3_1_19]
 gi|300832534|gb|EFK63162.1| DNA-binding response regulator [Bacteroides sp. 20_3]
          Length = 226

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++  +     +   +E  +S        +    D   ++  L   G   L
Sbjct: 3   ILVVEDENALREVIVRSLEKERYVVESASSFREASLKINDYDYDCIVLDIMLP--GGSGL 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +RA   +  +I IS   S++  +   D G DD + KP H  E+ AR+ ++ RR +
Sbjct: 61  TLLKELRALRKKDSIIIISAKDSIEDKVTGLDLGADDYLTKPFHLAELNARIKSVIRRKQ 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                +     + ++ D     + G+   L R+E  +L Y ++N  + ++K  +  +++G
Sbjct: 121 QDGELQLSLANLTIYPDKHSVYINGKEIVLNRKEFDLLYYFISNPNRLISKATLAESVWG 180

Query: 180 LF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + D+A   + + S +  LRKKL+       + +    GY +
Sbjct: 181 DYIDQADNFDFIYSQVKNLRKKLKAAGAIPEIKAVYGFGYKM 222


>gi|110833573|ref|YP_692432.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
 gi|110646684|emb|CAL16160.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
          Length = 240

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 99/224 (44%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D        +G+ +   +  E       + + D+  ++  L   G   L
Sbjct: 11  IMIVEDDERLADLTCEYLQSNGLGVTVVSDGEEAIRRIRADQPDLVVLDLMLP--GADGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R+  + P++ ++        +   + G DD V KP+  R +LAR+ A+ RR++ 
Sbjct: 69  TVCREVRSAYKNPILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRRVET 128

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 S  R E G + + +  R+  + G+   L   E  +L  L +N G  +++  IF 
Sbjct: 129 DSERDNSPARLEFGALVIDNSAREVTLAGDSVDLTSAEYDLLWLLASNAGTVLSRETIFE 188

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
            + G+     ++  ++  IS++R K+ +       + + R  GY
Sbjct: 189 KLRGI-QYDGQDRSIDVRISRIRPKVGDDPENPKRIKTVRSKGY 231


>gi|53804897|ref|YP_113275.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53758658|gb|AAU92949.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 243

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++         G+   G +     +   + +  D+  ++  L   GE  L
Sbjct: 8   ILIVDDDVEIRNLLGGYLSRFGMEAVGVHDGAAMKKALTESSFDLVVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S +P+I ++        +   + G DD V KP   RE++AR+ +I RR + 
Sbjct: 66  TLCRSLRGESDIPVIMLTARGDPMDRVVGLELGADDYVAKPFEPRELVARIQSILRRARH 125

Query: 122 ---------SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    S+   E    R+    R     +G V PL   E R+L   +    + + + 
Sbjct: 126 EREPESPESSDIAVEFEGWRLHRVLRQLTSPEGMVVPLSNAEFRLLSVFIERPNRILTRD 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           Q+     G   E V +  ++  +S+LR+KL++       + + R  GY
Sbjct: 186 QLLDYARGRAME-VFDRSIDLLVSRLRQKLQDDPKNPKLIKTIRGEGY 232


>gi|332668985|ref|YP_004451993.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338023|gb|AEE44606.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 244

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G ++E   S         +   DV  ++  L       LE
Sbjct: 23  LVVDDEPTLAELLSTALRYEGWTVEHALSGHAAVRQARATTPDVIVLDVMLPD--LTGLE 80

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA H  VP++ ++   +++  +    +G DD V KP    E++AR+ A+ RR   
Sbjct: 81  VLRRIRAAHPHVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRALLRRAGA 140

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            + R E     G + +  D  +    G+   L   E  +L Y M N  + ++K QI   +
Sbjct: 141 VSAREEAVLVVGDLTLDEDSHEVTRGGDDIRLTATEFELLRYFMRNPRRVLSKAQILDRV 200

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + N+VE ++S LR+K+ +K     + + R +GY +
Sbjct: 201 W-QYDFGGQANIVELYVSYLRRKI-DKGREPMLHTLRGVGYVL 241


>gi|220916055|ref|YP_002491359.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953909|gb|ACL64293.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 231

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D A V+    A     G  +E   ++   E L      DV  ++  L       
Sbjct: 7   LVLVVEDEAPVRRFLRAALAAHGYRIEEAGTVAEAEQLAPGHNPDVFLLDLGLPD--GDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L R +R  ++ P+I +S     +  +   D+G DD + KP    E+LARV    R  +
Sbjct: 65  IDLARRLREWTRAPIIVLSARGREEDKVTALDAGADDYLTKPFGVNELLARVRVALRHAQ 124

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +     E GP+R+    R+    G    L   E R+L  L  N GK +   QI   +
Sbjct: 125 APPDGPPVVEVGPLRIDLARREITRSGAEVRLTPTEYRVLAMLARNAGKVLTHRQILREV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G    A E + V   +++LRKKL ++      + ++  +GY +
Sbjct: 185 WGPN--ATEAHYVRVQVAELRKKLEDEPARPRLLMTEPGVGYRL 226


>gi|220922718|ref|YP_002498020.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219947325|gb|ACL57717.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 221

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D A +  G +A     G++++          L  S    +  ++  L   G    E
Sbjct: 4   LVVEDDAALARGLVAALRLAGLAVDHEADGAEAARLALSEPYSLIVLDVGLP--GLSGFE 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IRA  S VP++ ++   ++   +   D G DD + KP    E  ARV A+ RR + 
Sbjct: 62  VLRRIRAAKSAVPVMILTARDAVTDRVRGLDLGADDYLLKPFAPAEFEARVRALIRRGQG 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             N     G + +        +  E   L RRE  +L  LMA  G+ V K ++   ++G 
Sbjct: 122 LPNPVLRCGALSLDRATGTVTLGDEPVSLRRRELAVLTVLMARAGQVVPKERLSGEVFG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FDEAV  N +E ++++LRKKL+       + + R LGY +D
Sbjct: 181 FDEAVAPNALELYVARLRKKLQPNGPE--IRTIRGLGYLLD 219


>gi|47664|emb|CAA30934.1| unnamed protein product [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|587570|emb|CAA55076.1| ompR [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 239

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+  + RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRPVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|89091823|ref|ZP_01164778.1| Transcriptional regulatory protein CpxR [Oceanospirillum sp. MED92]
 gi|89083558|gb|EAR62775.1| Transcriptional regulatory protein CpxR [Oceanospirillum sp. MED92]
          Length = 235

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 104/228 (45%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + +        +G  +E   N+ E  E L+ S R  +  ++  +   G   
Sbjct: 6   LLMVDDDVELCELIGDYLRHEGYLIEFAHNADEACEQLKRSERFALMILDVMMP--GRTG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL + IR   Q+P+I ++        +   + G DD ++KP + RE+LAR+ A+ RR +
Sbjct: 64  LELLQQIRPKVQIPVIMLTGRGEDIDRILGLEMGADDYLSKPCNPRELLARIRAVLRRAE 123

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E   + +    R+  + GE+  L   E  +L YL+AN G  + K Q+
Sbjct: 124 PQQRTTLFPDSLVEHAGVTLDPGLREVRINGELLELTGTEFNVLAYLIANAGSVLEKEQL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              +      A +   ++ H+S++R+KL   L   + + + R +GY  
Sbjct: 184 TELVLHRKLAAYD-RAIDVHVSRVRQKLAKHLSDAELIKTIRGVGYQF 230


>gi|289424048|ref|ZP_06425834.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
 gi|289155473|gb|EFD04152.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
          Length = 231

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   ++         +G  + E     E  E L +     ++ ++  L       
Sbjct: 4   ILILEDEIGIRSFVSINLKREGYEVIEAGTGAEAIEKLSTEKNISLALLDIMLPDT--SG 61

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + IR     + +I ++        ++ F SG DD + KP   +E+L RV A+ RR+
Sbjct: 62  IEICKYIRKEFDNMGVIMLTAKSQEDDKIEGFQSGADDYIVKPFSIKELLMRVQALIRRV 121

Query: 120 KVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           K       NN   T P  +  + R          L   E  I++YLM N  + +++ QI 
Sbjct: 122 KKDSDSKKNNMINTPPFLLDPNKRKLYKNEVEVDLTPTEFSIVKYLMTNDSQSLSRDQIL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             ++G  D   +  +V+ +I ++R K+ +       + +    GYS 
Sbjct: 182 EEVWGSADLY-DYKIVDVNIRRIRNKIEDDPSKPKFIQTVWGYGYSF 227


>gi|261366160|ref|ZP_05979043.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
 gi|282572055|gb|EFB77590.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
          Length = 226

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G   EG              R ++  ++  +        
Sbjct: 4   ILIVDDEEPITALLCRTLTAAGYRCEGVTDSRLAADRIEQNRYELVLLDIMMPEV--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R +R     P+I ++   +L+  +     G DD + KP    E+LARV A+ RR   
Sbjct: 62  DLLRFLRPTG-TPVIFLTAKAALEDRVQGLRQGADDYIVKPFAPAELLARVEAVLRRTGR 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    + V +  +    +G+   L  +E  +L  L+ NRG+ + +  I   ++GL 
Sbjct: 121 GMAVLRAWDVTVDTARQQVARKGQPVELTPKEYELLLLLLRNRGRALYRDYILETVWGLD 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E      V++HI +LR+KL      + +++   +GY +
Sbjct: 181 AELDTTRTVDTHIRRLRRKL---GWDEEIETVWRVGYCL 216


>gi|225573433|ref|ZP_03782188.1| hypothetical protein RUMHYD_01625 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039184|gb|EEG49430.1| hypothetical protein RUMHYD_01625 [Blautia hydrogenotrophica DSM
           10507]
          Length = 228

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 93/219 (42%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   +          DG  +    S   E   Q     D   ++  +   GE   
Sbjct: 4   ILAVDDDEDLCTLLKRALERDGHQVTVLKSG-GEIREQHLRWADCIVLDVMMP--GEDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E  R IR  +  P++ ++        L     G DD + KP    E+ AR+AA  RR  +
Sbjct: 61  ETCRRIRGLADCPIVFLTAKTEEADILTGLGIGGDDYLTKPFRLGELRARIAAHLRREQR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +  NR     +      R    QG +  L + E  I EYL  + G+  +K QI+ A++G 
Sbjct: 121 IPQNRVRRAGLDFDLGERAVYRQGNLVRLTKGEYGICEYLALHAGQTFSKEQIYEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++   +E+ V  H+  +R KL+ K G  P+++   +GY 
Sbjct: 180 WEGTSDESAVTEHVKNIRAKLK-KEGVSPIETVWGIGYR 217


>gi|225574002|ref|ZP_03782647.1| hypothetical protein RUMHYD_02098 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038732|gb|EEG48978.1| hypothetical protein RUMHYD_02098 [Blautia hydrogenotrophica DSM
           10507]
          Length = 232

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 8/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + ++D   +  G        G  L    +    + L S    D+  ++  L        
Sbjct: 4   ILFVEDDLSLIHGLSYALKKQGYELHIARTYLEAKTLWSKINCDLIILDVSLPD--GSGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           +L + IR  S+VP++ ++            D G DD + KP     +L+R+ A+ RR + 
Sbjct: 62  DLCQDIRKTSKVPILFLTAADEETEITMGLDIGGDDYITKPFKLAVLLSRINALLRRSEN 121

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +    +  I+V    R+    G    L   E ++L + M N    ++  QI   ++
Sbjct: 122 FSQPSIELNSNGIQVQMLKREVFKDGMKIQLTAGEYKLLCFFMENPNIVLSPEQILGRLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
              +  ++ + +  +I +LR K+ +       + + R +GY   WN
Sbjct: 182 DCEENYIDNSSLTVYIRRLRAKIEDNPKTPSRIVTVRRMGYK--WN 225


>gi|197106157|ref|YP_002131534.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196479577|gb|ACG79105.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 230

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L++D   +         D G +++     E  ++L  +   D   ++  L    G  V
Sbjct: 3   ILLVEDDPDLSRQLKLALTDAGYAVDHAPDGEEAQFLGETEPYDAIILDLGLPKVDGVSV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           LE  R  R +   P++ ++   +    +  FD+G DD + KP H  E+LAR+ A+ RR  
Sbjct: 63  LE--RWRRENMATPVLILTARGAWSEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G +R+        V GE   L   E R+L YLM ++G+ +++T++   +Y 
Sbjct: 121 GHATPNLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQGRVISRTELVEHLYD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I ++RKK+    G D +++ R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRVRKKI----GADRIETVRGLGYRL 216


>gi|150015084|ref|YP_001307338.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901549|gb|ABR32382.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 230

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D         G +L+ F + +  E L    +E +  I   ++      + 
Sbjct: 5   LVVDDEKEIRDAIEIYLR--GENLKVFKAEDGLEALDILEKEKIHLIILDIMMPRFDGIR 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
               IR    +P+I +S        +   + G DD + KP +H E++ARV +  RR +  
Sbjct: 63  TCLKIRESQNLPIIMLSAKGEDSDKILGLNVGADDYITKPFNHLELVARVKSQLRRYEKP 122

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  +   + + +  +   ++GE   +   E +IL  L +N GK  +  +I+  
Sbjct: 123 LNVEEGKDIIKVKDLVIDTVAKKITLRGEDVKVTATEYKILYLLASNLGKVFSIKEIYEH 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++        EN V  HI ++R+K+  N    + +     +GY I+
Sbjct: 183 VWEEI-FYKSENTVTVHIRRIREKIEINTKEPEYIKVVWGIGYKIE 227


>gi|323483719|ref|ZP_08089099.1| regulatory protein VanR [Clostridium symbiosum WAL-14163]
 gi|323402910|gb|EGA95228.1| regulatory protein VanR [Clostridium symbiosum WAL-14163]
          Length = 236

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +  DD   +++    L   +G  + E  N  E  E  +S    D+  ++  +   G+  
Sbjct: 10  ILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVE--KSGGSVDLIILDVMMP--GKSG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +     IR    VP++ ++           F +G DD + KP  + E++ARV A+ RR  
Sbjct: 66  ILACLEIRKKLTVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYY 125

Query: 121 VSNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           V            + +   + +  D R+  ++G    L   E RIL  L  NRGK     
Sbjct: 126 VYQGGGNRKEDDVQIQIRDLLLNKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQ 185

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I+ +++      +  N V  HI  LRKKL  +      + +    GY I+
Sbjct: 186 NIYESVWEEPYYYISNNTVMVHIRNLRKKLEKDPKNPKYIVNVWGKGYRIE 236


>gi|318060761|ref|ZP_07979484.1| two component system response regulator [Streptomyces sp. SA3_actG]
          Length = 256

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61
           +++DD   + +        +G  +                R D   ++  L    G  VL
Sbjct: 25  LVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGLSVL 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            L R  R     P++ +++  +    +    +G D+ V+KP    E++AR+  + RR   
Sbjct: 85  HLMR--REQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAGA 142

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S +    G + +  D  +    G    L   E  +L YLM N  + ++K QI   ++
Sbjct: 143 GRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + NVVE +IS LR+K+ ++     + ++R  GY I
Sbjct: 203 -SYDFGGQANVVELYISYLRRKI-DRGREPMIHTRRGAGYLI 242


>gi|71065720|ref|YP_264447.1| putative two component system regulatory protein [Psychrobacter
           arcticus 273-4]
 gi|71038705|gb|AAZ19013.1| putative two component system regulatory protein [Psychrobacter
           arcticus 273-4]
          Length = 233

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 97/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +     A F   G  L+  ++      L ++ R DV  ++  L   G    
Sbjct: 9   ILLIEDNPDIVANIYAFFEPKGFELDNAHNGLSGLALAANNRYDVILLDVMLP--GMDGT 66

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +L +++R   H + P++ ++   ++   +  FDSG DD + KP    E+ AR+ A+ RR 
Sbjct: 67  KLCKMLREELHDKTPVLMLTARDTILDKVAGFDSGADDYLVKPFSLVELEARIKALIRRH 126

Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +     +  + G + +       +   +   L     +IL  LM+   + V+KT++   +
Sbjct: 127 QDEHFQHNIQVGSLSLNVAEHSVKRDDKPLKLTPTGFKILHTLMSASPRVVSKTELEEKV 186

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +    +    + + +H+  +R ++        + +   +GY I
Sbjct: 187 WEQ--DVPSSDALRTHLHSVRAQVDKPFDKTMIVTMPGVGYQI 227


>gi|312128528|ref|YP_003993402.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778547|gb|ADQ08033.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 217

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G  +E  +           +   V  ++  L  K     
Sbjct: 3   ILLVEDEEKLRKVIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR     P+I ++        +  F+ G DD V KP+  +EI+ARV AI +R K 
Sbjct: 61  SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTKK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++      + +    R+  V+G+   L ++E  +L YL   +   +++  I ++++G +
Sbjct: 121 PSSN---DILFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSRELILNSVWG-Y 176

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           +   +   V++HI  LR+KL +    D + + R  GY  + 
Sbjct: 177 EYYGDLRTVDTHIKNLREKLGDL--RDYIKTVRGYGYKFEV 215


>gi|256826484|ref|YP_003150443.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582627|gb|ACU93761.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 234

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 93/231 (40%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G  ++   + +    ++ +   D   I   ++      L
Sbjct: 4   ILIVEDEEKIARFIELELKHEGYEVD--KASDGRSGVEQALSADYDLILLDILLPQINGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR     P I ++   ++   +   D+G DD + KP    E+LAR+    +  K 
Sbjct: 62  EVLRRIRREKDTPTIMLTARDAVMDKVAGLDAGADDYLTKPFAIEELLARIRVALKHHKS 121

Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +                   + +  D R+  V  +   L  RE  +L  LM + G  + 
Sbjct: 122 PDQPTSLSPEPTATKTLSIKGVLLDIDRREVRVNSDPVELTNREFEVLRCLMEHAGVVMH 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +I +   G ++   + N V+ HI+ LR K+ +K     + + R +GY I
Sbjct: 182 RERIAADALG-YEFMGDSNNVDVHIAHLRAKIDDKHDIKLISTVRGVGYVI 231


>gi|41406932|ref|NP_959768.1| hypothetical protein MAP0834c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118465275|ref|YP_880280.1| PrrA family transcriptional regulator [Mycobacterium avium 104]
 gi|41395282|gb|AAS03151.1| hypothetical protein MAP_0834c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118166562|gb|ABK67459.1| two component response transcriptional regulatory protein prra
           [Mycobacterium avium 104]
          Length = 233

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 21  DDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLI 76
           + G+ L GF    +++  E L+S+      AI   +       + +   +RA  + VP+ 
Sbjct: 24  ERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 83

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIR 132
            +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+     GP+ 
Sbjct: 84  VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPLE 143

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+ 
Sbjct: 144 VDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVDV 202

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I  LR+KL    G   + + R +G+ +
Sbjct: 203 FIGYLRRKLEANGGPRLLHTVRGVGFVL 230


>gi|126729668|ref|ZP_01745481.1| DNA-binding response regulator CtrA [Sagittula stellata E-37]
 gi|126709787|gb|EBA08840.1| DNA-binding response regulator CtrA [Sagittula stellata E-37]
          Length = 238

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D          +     +++  +++   EE +  +   D   I   L        
Sbjct: 3   ILLVEDDPTTSKSIELMLSHANLNV--YSTDMGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A    P++ ++     Q+ +  F  G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRQLRVARIDTPILILTGEDDTQSKIKGFGFGADDYMTKPFHRDELVARIHAIIRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHSQSVIRTGKVSVNLDAKTVEVTGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             DE  E  +++  I KLRKKL    G D  +++    GY +
Sbjct: 181 GMDE-PELKIIDVFICKLRKKLSEATGDDNYIETVWGRGYVL 221


>gi|237742256|ref|ZP_04572737.1| two-component system response regulator [Fusobacterium sp. 4_1_13]
 gi|229429904|gb|EEO40116.1| two-component system response regulator [Fusobacterium sp. 4_1_13]
          Length = 233

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++             ++     E    + S    DV  ++  L  K     
Sbjct: 13  ILIIEDDKNIQRLLALELRYKNYFVDSAYDGEQGIEIFSKNSYDVVLLDLMLPKK--SGK 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  +  P+I I+   S+   ++  D G +D + KP    E+LAR+    R  + 
Sbjct: 71  EVCQELRKLADTPIIVITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVSTRNKEN 130

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           SNN+       I++    +   +  E   L + E  ILEY M N+G   ++ +I   ++G
Sbjct: 131 SNNKHFYLENEIKMDILAKKVFLNEEEIALTKTEFLILEYFMKNKGLSCSREKIIIDVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   EE +V+ +I+ LRKK+ +K     + + R  GY   +
Sbjct: 191 -YDFDGEEKIVDVYINSLRKKIDSK--SKYIHTIRGFGYIFQY 230


>gi|328944343|ref|ZP_08241807.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
 gi|327491262|gb|EGF23037.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
          Length = 234

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D  + +  D     E     +       S   D + ++  L   G   L
Sbjct: 14  ILVIEDEKNLADAIVRILTDAHYHAEAVYDGKSGLISCQSGLYDAAIVDRMLP--GMDGL 71

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R     +P++ ++   S Q  +D  D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 72  DIVKEVRRSGDSMPILILTARTSTQDKVDGLDAGADDYLTKPFEAPELLARLRALTRRQG 131

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V   + +     +     D   +     L  +E  +L+ L++   + V+K  + + ++G
Sbjct: 132 DVIIEQMKFADFSLDLSTHDLMCKNHSVHLSGKEFEVLKMLLSAPSRVVSKQDLLTYVWG 191

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +A  EN VE+++S LRKKL        + + R LGY ++
Sbjct: 192 TTADA-SENSVEAYVSFLRKKLAYVHSKVQITTLRMLGYRLE 232


>gi|160879612|ref|YP_001558580.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428278|gb|ABX41841.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 87/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +          D   +E   +L+    ++ + +     I   L+  G    
Sbjct: 4   ILIIEDDAAIAAIERDYLAIDHFEVEI--ALDGRSGMEKALQGGFDLILLDLMLPGIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            +   +R    +P++ ++        +     G DD + KP     ++ARV A   +   
Sbjct: 62  TVCCKLRETLDIPILMVTARREDIDKIRGLGLGADDYIEKPFSPSVLVARVKANLAQYAR 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                + +  +   G IR+ +D     V      L  +E  +L +L  N      +  ++
Sbjct: 122 LKKTDRTAPIQLNIGSIRINTDTHRVYVNDIEIDLKNKEYELLLFLALNADVVFNRETLY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I+G+ D   +   V  HI++LR ++    G    + + R  GY +
Sbjct: 182 ERIWGM-DAMGDNATVAVHINRLRDRIEEDPGNPRYIQTVRGAGYRL 227


>gi|329960930|ref|ZP_08299209.1| response regulator receiver domain protein [Bacteroides fluxus YIT
           12057]
 gi|328532216|gb|EGF59020.1| response regulator receiver domain protein [Bacteroides fluxus YIT
           12057]
          Length = 229

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 103/226 (45%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60
            +++DD   + +       ++G  ++  NS E E       R ++  ++  +    G K+
Sbjct: 6   ILVVDDEEDLCEILKFNLENEGYEVDTANSAE-EALRMDIGRYNLLLLDVMMGEISGFKM 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L +  +  + VP+I I+   +   T+  F+ G DD ++KP   RE+  RV A+ RR +
Sbjct: 65  ASLLKKDKKTAHVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAVRVKAVLRRTQ 124

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +       +     + +    +   + GE   L ++E  IL  L+ N+G+  ++  I  
Sbjct: 125 QAETERAPEQITYKSLVLDIIKKKVSIDGEEASLTKKEFEILLLLLQNKGRVFSREDILG 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+   +  V +  ++ +I++LRKK+   +    + ++   GY  +
Sbjct: 185 RIW-SDEVYVLDRTIDVNITRLRKKIG--IYGKCIVTRLGYGYCFE 227


>gi|299534067|ref|ZP_07047419.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298717976|gb|EFI58981.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 209

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 9/213 (4%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           ++    +AL   +G  ++        +      + D+  ++  L       L++ R +RA
Sbjct: 1   MIGQAVLALLRGEGYVVDWVQDGAQADTALHGHQYDLVLLDLGLP--KLDGLQVLRQLRA 58

Query: 70  HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAE 127
                P++  +   ++   +   D+G DD V KP    E+LAR+ A+ RR     +   E
Sbjct: 59  RKDATPVLVATARDAVHDRIAGLDAGADDYVIKPYDMDELLARIRALTRRAAGHLDAVYE 118

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +  + R+  V G+   L  RE  +L+ L+A  G  +++ QI   +YG  DE V  
Sbjct: 119 HGGVMLNPNTREASVNGQPVTLSGREWAVLQALLARPGATLSRQQIEDKLYGWGDE-VSS 177

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N VE +I  LRKKL    G   V + R LGY +
Sbjct: 178 NAVEVYIHGLRKKL----GAAAVLNVRGLGYMV 206


>gi|291617065|ref|YP_003519807.1| PhoP [Pantoea ananatis LMG 20103]
 gi|291152095|gb|ADD76679.1| PhoP [Pantoea ananatis LMG 20103]
 gi|327393515|dbj|BAK10937.1| transcriptional regulatory protein PhoP [Pantoea ananatis AJ13355]
          Length = 222

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D AL++        + G  ++     +  ++       D++ ++  L    E  + 
Sbjct: 4   LVVEDNALLRHHLSVQLREMGHQVDAAEDAKEADYFLQEHLPDIALVDLGLPD--EDGMS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L R  R  + + P++ ++     Q  ++  ++G DD V KP H  E+ AR+ A+ RR   
Sbjct: 62  LIRRWRNDAVRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMRRNSG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++      P +V    R+  +  +   L   E  I+E L+ N GK V+K  +   +Y  
Sbjct: 122 HASQIIAMAPFQVDLSRRELTIHDQPVKLTAFEYTIVETLIRNAGKVVSKDSLMLQLY-P 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             E  E + ++  + +LRKK+      + + + R  GY  D
Sbjct: 181 DAELRESHTIDVLMGRLRKKILALHSDEVIATVRGQGYRFD 221


>gi|126174120|ref|YP_001050269.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|217973566|ref|YP_002358317.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304411340|ref|ZP_07392954.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307305338|ref|ZP_07585086.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125997325|gb|ABN61400.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|217498701|gb|ACK46894.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304350195|gb|EFM14599.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911641|gb|EFN42066.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
          Length = 219

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+  G        G+ ++  NS  +++ LQ    E  SAI   L        
Sbjct: 3   IMLVEDNELLAQGICLSLAKLGMQVDHLNS--YQQALQGVKNESFSAIVLDLGLPDGNGK 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           EL +  R     +P I ++      T L+  D G DD + KP   RE+ AR+ AI RR  
Sbjct: 61  ELLKAWRQQGVSIPTIVLTANTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +N    G + +  + R+   + +   L RRE ++L  L  + G+ + ++Q+    YG
Sbjct: 121 GLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLELAQSAGRVLTRSQLEQLTYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + V  N +E HI  LRKKL N    + + + R +GY++
Sbjct: 181 W--DEVGSNSIEVHIHHLRKKLAN----ELIKTVRGIGYTL 215


>gi|331085450|ref|ZP_08334535.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407688|gb|EGG87186.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   V++         G   +   + +      SS   D+  ++  L       
Sbjct: 5   LILVVEDDTSVRNLITTTLKAHGYRHQTAANGQTAILEASSYNPDIVLLDLGLPD--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ R IR+ S +P+I IS        +   D+G DD + KP    E+LAR+    RRL 
Sbjct: 63  VEIIRKIRSWSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQRRLA 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G + +        + G+   L   E ++L  L  + GK +  T I
Sbjct: 123 IMQGGTQEEKSTFTNGKLMLDYGAGCAYMDGKELHLTPIEYKLLCLLSKHVGKVLTHTYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              I+G   E  +   +  +++ LRKK+ ++      + +   +GY +
Sbjct: 183 TQEIWGRSWEN-DVASLRVYMATLRKKIESEPDMPQYIQTHIGVGYRM 229


>gi|225570853|ref|ZP_03779876.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM
           15053]
 gi|225160315|gb|EEG72934.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM
           15053]
          Length = 224

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++ DD   +       F   G  +    +L   E L+  AR  D+  ++  +   G   
Sbjct: 5   ILIADDEQGIIQLLKDYFEIQGYRV--LEALNGAEVLEKLARKPDIILLDVSMP--GIDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ R IR+H   P++ ++     Q  ++    G DD + KP    E+ ARV A  RR  
Sbjct: 61  FEVCRRIRSHISCPILFLTARIEEQDRINGLKLGGDDYIMKPFSIEELGARVEAHLRREE 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +++ +   +  + +    R    + +   L + E  I+E L  N G+  +K Q++   
Sbjct: 121 RKRLNGSVLMSDRLAIRYSERSVYYENDQVNLTKMEFDIVELLSMNPGQVFSKDQLYEKT 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            G +D A + ++V  HI ++R KL        +++   +GY 
Sbjct: 181 RG-YDGAGDSSIVTEHIRRIRTKLAEYTEKSYIETVWGVGYK 221


>gi|170697617|ref|ZP_02888706.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171321223|ref|ZP_02910192.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172061579|ref|YP_001809231.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|170137504|gb|EDT05743.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171093507|gb|EDT38679.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171994096|gb|ACB65015.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 210

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 9/213 (4%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           ++ +G       DG +++     +    L +   E    +   L       +++ R +RA
Sbjct: 1   MIAEGVRKALRADGFAVDWVQDGDA--ALTALGGEAYDLLLLDLGLPKRDGIDVLRTLRA 58

Query: 70  HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
             Q +P++ ++   ++   +   D+G DD + KP    E+ AR+ A+ RR    S +   
Sbjct: 59  RGQSLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQAGRSESLIR 118

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +        + G    L  RE  +L+ L+A  G  ++K+Q+   +YG + E +  
Sbjct: 119 HGALTLDPASHQVTLDGAPVALSAREFALLQALLARPGAVLSKSQLEEKMYG-WGEEIGS 177

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N VE +I  LRKKL    G D + + R LGY +
Sbjct: 178 NTVEVYIHALRKKL----GSDLIRNVRGLGYMV 206


>gi|254228780|ref|ZP_04922203.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262396500|ref|YP_003288353.1| DNA-binding response regulator [Vibrio sp. Ex25]
 gi|151938727|gb|EDN57562.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262340094|gb|ACY53888.1| DNA-binding response regulator [Vibrio sp. Ex25]
          Length = 243

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  +    ++   +        D+  ++  L       L
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHQVSRATNVADAKAQYQQQPFDLLILDRGLPD--GDGL 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R      P++ ++        +D  ++GVDD + KP    E  ARV  + RR+ 
Sbjct: 70  DICHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVS 129

Query: 121 VS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +          ++  + GP+R+  +     +  +   L   E  +L++L    G+  +K
Sbjct: 130 QTAEAKVANEVLDDAMDFGPLRIIPELHQVSLNDKDVTLTATEFTLLQFLATRPGRVYSK 189

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++   ++     +   + V S I++LR KL  +      + +   +GY  
Sbjct: 190 DELLDHVWNTS-HSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGYKF 239


>gi|220919853|ref|YP_002495156.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
 gi|219952273|gb|ACL62664.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 231

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++IDD   +          +G ++   F + E  + L+   R D   ++  L       
Sbjct: 5   LLIIDDDRRLAAMVSEYLSAEGYAVASRFTAREGHDALRR-ERFDAVILDVMLPDC--DG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            EL R IR HS VP++ ++        +   + G DD + KP + RE+LAR+ A+ RR +
Sbjct: 62  FELCRQIRTHSGVPILMLTAKGDDTDRIIGLEIGADDYLPKPFNPRELLARIRALLRRQR 121

Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G +++    R   + G    L   +  +L     N G+ +++ ++   + 
Sbjct: 122 APQEAALLDFGRLQIDPSSRVVRLDGVERRLTSHQFDLLLAFATNAGRVLSRERLMDLVK 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           G   +A++   ++ H+S+LR  + +       + + R  GY  
Sbjct: 182 GEELDALD-RSIDVHVSRLRAVIEDDPRHPRRLITIRGAGYVF 223


>gi|187735605|ref|YP_001877717.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425657|gb|ACD04936.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 234

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   + D         G +     + +    L+ + R+    I    +  G    
Sbjct: 4   ILIAEDDHAISDLVAYNLERAGHTP--LAAYDGLTALEVARRDKPELILLDQMMPGMDGH 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + R +R  S    +P+I ++     +  +   + G DD V KP   +E++ RVA++ +R
Sbjct: 62  GVLRELRRDSRTQNIPVIFLTAKAQAEDRIQGLELGADDYVTKPFSPKELVLRVASVLKR 121

Query: 119 LKVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            + +     AE GP     +     +  E   L   E +++ +++   G+ + +  + S 
Sbjct: 122 CEHTPGSVIAEYGPFTFDKNALKFYIDKEEVDLTATEFKLMIHMVEREGQTLNRNDLLSC 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +    +   +++H+ +LR+KL      D +++ R +GY  
Sbjct: 182 VWG-YSHQAQSRTLDTHMKRLRQKLAPY--ADCIETVRSIGYRF 222


>gi|330819658|ref|YP_004348520.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327371653|gb|AEA63008.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 220

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 7/219 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G       +G +++     +       +    +  ++  L G+    L 
Sbjct: 4   LLVEDDPLIGSGLEEGLRHEGFAVDWVRDGDAASLALRTTPYGLMLLDLGLPGRDGLSLL 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121
                     +P I I+   +L   +   D+G DD + KP    E+LAR+ A+ RR    
Sbjct: 64  SSLRR-RDDALPAIVITARDALSDRIAGLDAGADDYLVKPFALEELLARIRAVNRRHSGR 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +      G +R+        + G+   L  +E  +L  LM + G  +++ Q    +Y  +
Sbjct: 123 AQTTLSAGALRLDPVRHQVWLGGDEVTLSPKEFVMLHELMVDPGAVISREQFEERLY-SW 181

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E +E N V+ HI  LRKKL    G   + + R +GY I
Sbjct: 182 GEEIESNAVQVHIHNLRKKL----GHVAILTVRGVGYRI 216


>gi|163738248|ref|ZP_02145664.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
 gi|163740186|ref|ZP_02147580.1| DNA-binding response regulator ChvI [Phaeobacter gallaeciensis
           2.10]
 gi|161386044|gb|EDQ10419.1| DNA-binding response regulator ChvI [Phaeobacter gallaeciensis
           2.10]
 gi|161388864|gb|EDQ13217.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
          Length = 233

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++  +       +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDIKMPR--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +R  +Q+P+I ++        +     G DD V KP   R ++ R+ A+ RR + 
Sbjct: 62  DLLQRLRQKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N   E G +R+         +G+   L   E  +L+ L    G   ++ 
Sbjct: 122 ISGDAVATTTENKVMERGNLRMDPLRHSVSWKGQDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           Q+    Y      V++  ++SHI +LRKK+R+    F  +++   +GY  +
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRSADSEFSAIETLYGIGYRYN 231


>gi|332531173|ref|ZP_08407086.1| two component transcriptional regulator, winged [Hylemonella
           gracilis ATCC 19624]
 gi|332039280|gb|EGI75693.1| two component transcriptional regulator, winged [Hylemonella
           gracilis ATCC 19624]
          Length = 239

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D  ++ DG +      G ++    +    +    +       +   L       L
Sbjct: 3   ILIAEDDQVLADGLLRTLRGSGAAVNHVANGAEADAALMTQPSQFDLLILDLGLPKLHGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +RA    +P++ ++   S++  +   D G DD + KP   +E+ ARV A+ RR L
Sbjct: 63  EVLQRLRARGASLPVLILTAADSVEDRVQGLDYGADDYMAKPFSLQELEARVRALTRRGL 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177
             ++     GP+     G    + G +  L  RE  +LE L+   G+ V+K Q+   +  
Sbjct: 123 GAASGLIRHGPLVYGQAGHVATIDGRLVELSARELGLLEVLLQRCGRLVSKDQLVDRLCE 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G   E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 183 WG---EEVSNNAIEVYIHRLRKKIE--GGPIRIATVRGLGYCLE 221


>gi|297198420|ref|ZP_06915817.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147085|gb|EDY60144.2| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 246

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +                  D   ++  L         
Sbjct: 22  LVVDDDPDLAEVLSGALRYEGWQIRTAGDGASAVAAARELLPDAVVLDVMLPDT--DGFA 79

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R + +  + V ++ ++   +++  +    +G DD V KP    E++AR+  + RR  +
Sbjct: 80  VLRALHSVKADVCVLFLTARDTVEDRIKGITAGGDDYVTKPFSLEEVVARLRGLLRRAGL 139

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +       R   G + +  D R+    GE+  L   E  +L +LM N  + ++K QI   
Sbjct: 140 ARQLDEGPRLTVGDLVMDEDAREVTRGGELIELSPTEFELLRFLMRNPRRVLSKAQILDR 199

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D     +VVE +IS LRKK+ +      + + R  GY I
Sbjct: 200 VW-SYDFGGRAHVVELYISYLRKKV-DAGREPLIHTVRGAGYVI 241


>gi|149926501|ref|ZP_01914762.1| two-component response regulator [Limnobacter sp. MED105]
 gi|149824864|gb|EDM84078.1| two-component response regulator [Limnobacter sp. MED105]
          Length = 231

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 99/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + D       ++G  ++   +      L +    +V  ++  L       L
Sbjct: 3   LLLIEDDLRLADYLKKGLTEEGFVVDLARNGIDGLHLATQGLYEVIILDGMLPD--IDGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R    +P++ ++    ++  +    +G DD + KP    E++AR+ A+ RR   
Sbjct: 61  AVLSALRQSKSIPVLMLTARAMVEDRVSGLKAGADDYLVKPFAFAELVARLHALGRRTST 120

Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               ++T       + + +  R  +  G+   L  +E  +L  L+  +G+ +++T+I   
Sbjct: 121 VAAESQTTVLTLLDLELDAVRRTAKRGGKDLRLTAKEFSLLWLLLRRKGEVISRTEIAEL 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           I+ +     E NV++  I +LR KL +      + + R +GY ++
Sbjct: 181 IWDMH-FDSETNVIDVAIRRLRIKLDDPYEIPLLHTIRGMGYVLE 224


>gi|320457990|dbj|BAJ68611.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 245

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        DG S+   ++      L+     D+  ++  +        
Sbjct: 28  ILMIDDDRPILELVKNGLEKDGHSVT-IHTSAAHVPLEGLNGYDLIILDIMMPD--MDGF 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR+    P++ ++     +        G DD + KP    E+ ARV A  RR + 
Sbjct: 85  TYCGKIRSLVDCPILFLTAKTMERDITSGLGLGADDYLTKPFRIAELRARVHAHLRREQR 144

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       I++    ++  V     PL + E  I EYL  NRG+  +K QI+ A++  
Sbjct: 145 ERHVSLTFDRIKIDLSAKELLVDNIPVPLTKSEYLICEYLAGNRGQVFSKKQIYEAVFPF 204

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +    + + + +HI  +R K     G  P+ +   +GY  +
Sbjct: 205 YGY-GDGSTISTHIKNIRSKFEEA-GVQPIVTVWGIGYKWE 243


>gi|196233990|ref|ZP_03132826.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196221929|gb|EDY16463.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 230

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D + +       F  +G   E  +  E       +A  D + I+  L       L
Sbjct: 9   ILVVEDDSRIASFVAKGFKQNGYLAEISSDGEDGLQKLQTAPFDAAVIDLMLP--KMDGL 66

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   IR     V ++ +S   S++  +    SG DD + KP    E+LARV AI RR+ 
Sbjct: 67  SLIERIRKGKTPVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRVS 126

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                 R E+  + +       + +G    L  RE  +LE L+ NRG+ + K Q+   ++
Sbjct: 127 REAEVERLESAGVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERLW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +    + NVV+  + +LR KL        + + R +GY  
Sbjct: 187 D-YSFDPQTNVVDVLVCRLRNKLDRGFDTKLIHTLRGIGYVF 227


>gi|121534557|ref|ZP_01666379.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306809|gb|EAX47729.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 223

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D + +      +   + + ++              +  DV  ++  +   G   L
Sbjct: 3   ILLAEDDSRLGKLIKHMLEKEKMQVDWVTEGNAALEYALYSPYDVVILDWMMP--GLSGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R    Q  ++ ++   ++   +   D+G DD + KP    E++AR+ A+ RR  
Sbjct: 61  EVCDRLRKRRYQGAILMLTARDAVDDKVLGLDTGADDYLVKPFEFSELMARIRALSRRSA 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V    +  + G + +    R          L  RE ++L+ L+ NRGK V +  I   ++
Sbjct: 121 VVLKEDIVQVGDLVLNRTTRVVRRGDREIQLTGREFQMLDLLVQNRGKVVPREVILDRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           GL +  V  N +++++  LRKK+        + + R +GY +
Sbjct: 181 GL-ESEVSSNNLDAYVRLLRKKIDFPGEEKLIHNIRGIGYKL 221


>gi|89902408|ref|YP_524879.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347145|gb|ABD71348.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 243

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++   +     +    E   + +  E  Q+  R  +  +   L+      L
Sbjct: 7   ILIVDDEPEIRRLLVDYLMRNNF--EAVAARDGREMWQALDRHAIDLVVLDLMLPDTDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P++ ++        +   + G DD + KP   RE+LAR+ A+ RR + 
Sbjct: 65  SLCRELRAKSNLPVLMLTALGEETDRIVGIEMGADDYLVKPFSPRELLARIKAVLRRTRA 124

Query: 122 --------SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                   S          + +  R      G   PL   E R+L  L+ +  + + + Q
Sbjct: 125 LPPNMRPESARCLCFAGWCLDTAERLLTAPDGVATPLSGGEYRLLHILLDHPNRVLNRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +   I+G   EA +   ++  +S+LR++LR+       + + R  GY +
Sbjct: 185 LTEMIHGREAEAYD-RAIDVQVSRLRQRLRDDSREPTLIKTVRGEGYVL 232


>gi|264680102|ref|YP_003280011.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262210617|gb|ACY34715.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 209

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 9/213 (4%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69
           ++    +AL   +G  ++        +      + D+  ++  L       L++ R +RA
Sbjct: 1   MIGQAVLALLRREGYVVDWVQDGAQADTALYGHQYDLVLLDLGLP--KLDGLQVLRQLRA 58

Query: 70  HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAE 127
                P++  +   ++   +   D+G DD V KP    E+LAR+ A+ RR     +   E
Sbjct: 59  RKDATPVLVATARDAVHDRIAGLDAGADDYVIKPYDMDELLARIRALTRRAAGHLDAVYE 118

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G + +  + R+  V G+   L  RE  +L+ L+A  G  +++ QI   +YG  DE V  
Sbjct: 119 HGGVMLNPNTREASVNGQPVTLSGREWAVLQALLARPGATLSRQQIEDKLYGWGDE-VSS 177

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N VE +I  LRKKL    G   V + R LGY +
Sbjct: 178 NAVEVYIHGLRKKL----GAAAVLNVRGLGYMV 206


>gi|153853493|ref|ZP_01994873.1| hypothetical protein DORLON_00862 [Dorea longicatena DSM 13814]
 gi|149753648|gb|EDM63579.1| hypothetical protein DORLON_00862 [Dorea longicatena DSM 13814]
          Length = 220

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 99/221 (44%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +   ++   DG  +   ++   +  ++   R D+  ++  +   G    
Sbjct: 4   ILAVDDEPAILEMIESILNKDGHLVTKVSN-PLKINMEELHRYDLILLDIMMP--GIDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR     P++ ++      + ++    G DD ++KP    E+ AR+ A  RR   
Sbjct: 61  ELCKRIRILVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++ R   G + +    +   V  +   L + E  I E+L  NRG+  +K QI  A++G 
Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELLLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD    ++ + +HI  +R K  +   + P+ +   +GY  +
Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGYKWE 219


>gi|83719874|ref|YP_441579.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           E264]
 gi|83653699|gb|ABC37762.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           E264]
          Length = 234

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           VLI+D   ++    +   ++G+++    +        ++ + D++ ++  L       L+
Sbjct: 11  VLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPD--GDGLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R  S++P+I +S     +  +   D+G DD + KP    E+LAR+ A  RR    
Sbjct: 69  VIRELRGWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 128

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   + G + V    R     GEV  L   E R+L  L+ + G+ +   Q+   ++
Sbjct: 129 GAAESPVVKFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRNVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G        + +  +++ LR+KL  +      + ++  +GY +
Sbjct: 189 GPTHVE-SHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRL 230


>gi|270264908|ref|ZP_06193172.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041206|gb|EFA14306.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 231

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  I     +G  +  F   E      +     +  ++  L        EL
Sbjct: 7   LVEDEPSIADTLIYTLESEGFQVRWFERGEPALQALAQGAPALVILDVGLPD--INGFEL 64

Query: 64  PRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            R + + S  +P++ ++        L   + G DD V KP   RE+ ARV  I RRL+  
Sbjct: 65  CRRLLSQSADLPILFLTARSDEVDRLIGLEIGADDYVAKPFSPREVSARVRTILRRLQKQ 124

Query: 123 NNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GP  +   G       +  PL R E  +L+ L+   G+  ++ Q+  ++
Sbjct: 125 QRLQQPALYTFGPFDLDEPGAILYYHQQPLPLTRYEFLLLKTLLLAPGRVFSRQQLMDSV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +   +E+++   V++HI  LR KLR    G  P+ + R +GYS+
Sbjct: 185 WAQAEESLD-RTVDTHIKTLRAKLRAIDPGEPPIHTHRGMGYSV 227


>gi|169349485|ref|ZP_02866423.1| hypothetical protein CLOSPI_00203 [Clostridium spiroforme DSM 1552]
 gi|169293560|gb|EDS75693.1| hypothetical protein CLOSPI_00203 [Clostridium spiroforme DSM 1552]
          Length = 271

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +             ++  + +    E L+   +  +      ++      +
Sbjct: 39  ILVVEDEIEIAKAIEIYLKSQNYNV--YIANNGLEGLKIIEQHPIHLAIVDIMMPVMDGI 96

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR     P+I +S        +   + G DD V KP    E+LARV++  RR   
Sbjct: 97  EMTMKIREQYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHK 156

Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
             N  +           G + +  D ++  + G++  +   E +ILE LM   G+  +  
Sbjct: 157 FLNIIDQKQENTHKYIVGGLELDIDTKEVIIDGKIVKVTPIELKILELLMEKPGRVFSSE 216

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           QI+  ++   + A+    V  HI  LR+K+  N      +     +GY I+
Sbjct: 217 QIYENVW--HEAAINTETVMVHIRNLREKIEINPSNPQYLKVVWGVGYKIE 265


>gi|153002704|ref|YP_001368385.1| osmolarity response regulator [Shewanella baltica OS185]
 gi|160877440|ref|YP_001556756.1| osmolarity response regulator [Shewanella baltica OS195]
 gi|217975277|ref|YP_002360028.1| osmolarity response regulator [Shewanella baltica OS223]
 gi|304412087|ref|ZP_07393697.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307305982|ref|ZP_07585728.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|151367322|gb|ABS10322.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160862962|gb|ABX51496.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217500412|gb|ACK48605.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349637|gb|EFM14045.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911475|gb|EFN41901.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315269642|gb|ADT96495.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 241

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R     +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQQGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                       +   G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 QDVPGAPAQQEAQISFGEFSLDLATREMYHGDESIALTSGEFAVLKVLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|257066388|ref|YP_003152644.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798268|gb|ACV28923.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 232

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 92/228 (40%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G       S E    +    +  ++ ++  L   G    
Sbjct: 6   ILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKIFEKEKPALAILDIMLP--GMSGY 63

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR  S    +I +S        +   + G DD + KP + +E++ RV ++ RR+ 
Sbjct: 64  EVCEKIRDESPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRVN 123

Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +S  R           GP  +    +      +   +   E  IL+  + N+GK + + +
Sbjct: 124 LSQARPKDDSKENLTDGPFTLDIYAKSFYKNNKEIDVTPTEFTILQNFIKNKGKAMTRDE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
           I +  +G  + + +  +V+ +I ++R K+ +     + +++    GY 
Sbjct: 184 IMTQTWGE-NYSNDTKIVDVNIRRIRAKIEDNPAKPEFIETVWGTGYR 230


>gi|167724100|ref|ZP_02407336.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
          Length = 219

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +   A    DG   +   SL       + A  D+      L+    + L+
Sbjct: 4   LLVEDDPWLGEAVRAQIEKDGHPTDCVASLAHARRHVAVAPYDLIL--LDLLLPDGRGLD 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +RA  S VP+I ++    +   +   ++G DD + KP    E+ ARV+A+ RR   
Sbjct: 62  FLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARRYSG 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N   + G + V    R     G    L   E  +LE L+ + G  ++K Q+   +Y  
Sbjct: 122 NPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERLYSF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE V  N +E ++S+LRKKL    G + +++ R LGY +
Sbjct: 182 SDE-VGSNTIEVYVSRLRKKL----GAELIETVRGLGYRL 216


>gi|119945946|ref|YP_943626.1| response regulator GltR [Psychromonas ingrahamii 37]
 gi|119864550|gb|ABM04027.1| response regulator GltR [Psychromonas ingrahamii 37]
          Length = 241

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 93/229 (40%), Gaps = 14/229 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +++        +   +         +  +   + D+  ++  L   G+    
Sbjct: 8   LVIDDDQAIRELLAEYLSKNNFDVITAEDGLEMDKQRLIHQPDLIILDIMLP--GDDGFI 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L + IR  S VP+I ++        +   + G DD + KP   RE+LAR+ A+ RR + +
Sbjct: 66  LCQRIRQTSHVPIIMLTANSDEMDRVLGLEIGADDYIAKPFSPRELLARIKALLRRTQFA 125

Query: 123 NNRAE---------TGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   +             ++ +         +    L   + ++L   + N    +++ Q
Sbjct: 126 SEENQPSAKARYLLFSNWKLDTKQHLLIDDNKDEISLTGADFQLLTLFLDNTNSAISRDQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           I  A++G  D    E  ++ H+S+LR+ L++       + + R  GY  
Sbjct: 186 ICQALHGR-DAFANERGIDVHVSRLRQCLKDDAKSPKIIKTIRGAGYVF 233


>gi|113972138|ref|YP_735931.1| osmolarity response regulator [Shewanella sp. MR-4]
 gi|114049386|ref|YP_739936.1| osmolarity response regulator [Shewanella sp. MR-7]
 gi|113886822|gb|ABI40874.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890828|gb|ABI44879.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 241

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R   S +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQV 125

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 QDVPGAPAQQEAEITFGEFSLDLATREMYHGDEAITLTSGEFAVLKVLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|332709036|ref|ZP_08429006.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332352225|gb|EGJ31795.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 231

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 107/228 (46%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
           +L++D   +          +   ++   N  E   +L +   +  ++  +  L   G   
Sbjct: 4   LLVEDEPDLGAAIKRALNIEKYVVDLVVNGTEAWGYLNNHETQYTLAIFDWLLP--GLSG 61

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL R +R +++ +P++ ++    L+  +   D+G DD + KP    E+LARV A++RR 
Sbjct: 62  LELLRQLRYSNNPLPILMLTAKDRLEDRVMGLDTGADDYLVKPFLMAELLARVRALHRRT 121

Query: 120 K-VSNNRAETGPIRVFSDGRDPEV---QGEV--FPLPRRERRILEYLMANRGKRVAKTQI 173
             +   + + G + +    R        GE    PL  +E ++LEY M +  + +   QI
Sbjct: 122 PLLQPQQLQVGDLILDYGNRTVYRLAANGEKLHVPLTNKEFQLLEYFMKHPNQVMTTNQI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + ++ +  E +  NVV + +  LR+KL +     P+++   LGY ++
Sbjct: 182 RNQLWEVNAEPI-SNVVAAQMRLLRRKLESINSSIPIETVHGLGYRLN 228


>gi|323499146|ref|ZP_08104124.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
 gi|323315779|gb|EGA68812.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
          Length = 243

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D         G  +    S+   + L      D+  ++  L       L
Sbjct: 12  ILLVEDDDDLADLVQMHLKFQGHQVARVTSIADAKALHKDQNLDLVVLDRGLPD--GDGL 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +    +R   + +P++ ++   S    +D  ++GVDD + KP    E  ARV  I RR  
Sbjct: 70  DFCHYLRQQQEWLPVLMLTARDSEMDKVDGLEAGVDDYITKPFSVLEFQARVRNILRRFN 129

Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                    +  N     G + +  D     +  +   L   E  +L++L    G+  +K
Sbjct: 130 HKAESVVEPEHVNANMRFGSLIIAPDLHQVCLNNKEVSLTATEFSLLQFLATRPGRVYSK 189

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++   ++   + +   + V S +++LR KL  +      + +   +GY  
Sbjct: 190 DELLDHVW-HTNHSGYHHTVCSTVNRLRSKLCLSDSDHHFIQTVWGVGYKF 239


>gi|319790723|ref|YP_004152363.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315593186|gb|ADU34252.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 264

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 94/253 (37%), Gaps = 36/253 (14%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D + + D    +   DG +     + E      +     ++ ++  L        
Sbjct: 7   ILIAEDESGIADTLQYVLKSDGFTPVWCATAEEAIAQFAEEPPALAILDIGLPD--LNGF 64

Query: 62  ELPRIIRA------HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115
           EL + +RA        +VP++ ++        +   + G DD + KP   RE++ARV  I
Sbjct: 65  ELFKRLRALNQSQGGPEVPMLFLTARSDEIDRVVGLELGADDYIAKPFSPRELVARVRTI 124

Query: 116 YRRLKVSNNRAETGPIR--------------------------VFSDGRDPEVQGEVFPL 149
            RR   ++                                   + ++       G +  L
Sbjct: 125 LRRSTRNSPGGPGTAAGPGNGVPPQISPPAPPTAPQTPPMPFALDNERMQIRYYGRLLEL 184

Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFD 208
            R E  +L  L+   G+   + ++   ++    ++ +   V++HI  LR KL+      +
Sbjct: 185 SRYEYGLLRLLVQRPGRVFTRDELLEHVWDDASDSFD-RTVDAHIKTLRAKLKAVAPDVE 243

Query: 209 PVDSKRFLGYSID 221
           P+ + R  GY+++
Sbjct: 244 PIRTLRGTGYALN 256


>gi|310639847|ref|YP_003944605.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309244797|gb|ADO54364.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 219

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 8/221 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L DD   +         ++G  +    +      L    R  V+ ++  +        E+
Sbjct: 2   LADDEPHILQFLELGLINEGYEVRTAENGSDALDLAREFRPHVAVLDVMMPE--MNGFEV 59

Query: 64  PRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
            + ++     + +I ++    +   +     G DD + KP    E+LAR+ A   R +  
Sbjct: 60  CQSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYIVKPFSFNELLARIEARL-RNQFP 118

Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           +       GP +V    ++   Q +V  L   E  +L++L+ N G  ++K++I   ++G 
Sbjct: 119 DLLGEVVHGPFQVDDRRKEIRYQSQVLELSPTEYELLKFLVLNHGIVLSKSRILDRVWG- 177

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +D   E+N+VE +I  LR+KL++K     + + R +GY +D
Sbjct: 178 YDFGGEDNIVEVYIRSLREKLKDK-EHRVIRTLRGVGYRVD 217


>gi|194397670|ref|YP_002037262.1| VncR response regulator TCS10 [Streptococcus pneumoniae G54]
 gi|194357337|gb|ACF55785.1| VncR response regulator TCS10 [Streptococcus pneumoniae G54]
          Length = 218

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGY--ETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+  P+  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I KLRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIQKLRKKLD----LDCILTVRNVGYKLE 216


>gi|168334739|ref|ZP_02692871.1| DNA-binding response regulator [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 228

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V D       ++   +  F     EE L+    E +  +   L+  G +  
Sbjct: 3   ILIIEDEKRVADIVAKYLENEKYRV--FTCYSGEEGLKVFLDEKIDVVLLDLMLPGMQGE 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S V +  IS   +L   +  F+ G D+ + KPI  REI+ARV A+  R + 
Sbjct: 61  EICKKMREISNVYIFMISAKGTLDNKVGGFNLGADEYLVKPISPREIVARVNALKTRKER 120

Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            NN      + G ++++ + R     G+   L   E  IL +L  + G+   + Q+  A+
Sbjct: 121 ENNEELCIFDKGNLKIYPETRMVISYGKDIVLTPNEFDILYHLAKSPGRVFXREQLIDAV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            G+ D    +  ++ HI  +RKK+  +        +   +GY  D
Sbjct: 181 MGI-DXDGFDRTIDVHIKNIRKKIELDTKSPKFXKTVTGIGYKFD 224


>gi|189500624|ref|YP_001960094.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
 gi|189496065|gb|ACE04613.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
          Length = 236

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 95/230 (41%), Gaps = 12/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +                   S E    L +    D+  ++  L   G   
Sbjct: 5   LILVVEDDRNLAKLLKYNLEKASYKCVLAESGEEALRLLADRAVDLVLLDVMLP--GIDG 62

Query: 61  LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
            E+ R +R    H ++P++ ++        +  F+ G+DD V KP   RE+  R+ AI +
Sbjct: 63  FEVCRKLRQQQLHRELPIVLLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILK 122

Query: 118 RLKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R +              + V       ++ G    L   E ++L  L+  RG   ++  +
Sbjct: 123 RDRRGKQDVREVLVCDGLEVDIARHSVKLDGRDIVLTLMEFKLLAVLLKRRGHAQSRETL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            S ++ + D+ +    +++HI++LR+KL        + + R LGY ++ +
Sbjct: 183 LSDVWDV-DKTINTRTIDTHITRLREKLGETG--KYIKTVRGLGYKLEES 229


>gi|241759274|ref|ZP_04757380.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Neisseria flavescens SK114]
 gi|241320410|gb|EER56707.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Neisseria flavescens SK114]
          Length = 225

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 20/231 (8%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD AL+ +        +G+++      E       + + DV  +++ +       L+
Sbjct: 5   LLVDDDALLTELLTEYLTAEGLNVHSVPDGEAGVQEILTGQYDVIVLDSMMP--KMNGLD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + +R  S VP+I ++        +   + G DD V KP   RE+LAR+ AI RR + S
Sbjct: 63  VLKNVRIQSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKPCTPRELLARINAILRRAQHS 122

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI--- 173
           N      N      + ++   R   ++     L   E  +LE LM + G+ V+K  +   
Sbjct: 123 NEQNNAPNSISVSDVILYPAKRQASIKDIPLELTSTEFNLLEVLMRHAGQVVSKETLSIE 182

Query: 174 -FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
                   FD       ++ HIS +R KL +      + + R LGY    N
Sbjct: 183 ALDRKLAKFD-----RSIDVHISSIRHKLGDA---SLIQTVRGLGYLFVKN 225


>gi|85814041|emb|CAF31457.2| putative two-component system response regulator [Micromonospora
           echinospora]
          Length = 231

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++   +    D G ++   ++           R D+  ++  L        
Sbjct: 4   LLLIEDDLTIRTPLVRALRDRGHAVAAASTAMDGLRDALDNRPDLVVLDLGLPD--LDGR 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL R++RA S VP+I  +        +   D+G DD V KP    ++ ARV A+ RR   
Sbjct: 62  ELLRMLRAVSPVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARVRAVLRRAAS 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                ++    G +RV    R   + G    L  RE  +L +L A  G+ V K ++ + +
Sbjct: 122 VAGADDSALVVGGLRVDPRSRQVTLDGAPVELTPREFDLLHHLAARPGEVVTKRELLTDV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +      +  V+ H+S LR+KL  N      + + R +G  +
Sbjct: 182 WQIP-YGGADKTVDVHLSWLRRKLGENAQQPRYLHTVRGVGVRL 224


>gi|127514565|ref|YP_001095762.1| osmolarity response regulator [Shewanella loihica PV-4]
 gi|126639860|gb|ABO25503.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 241

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R +    P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQNGNTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQA 125

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 PEVPGAPTQQEEEITFGEFTLNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233


>gi|331091534|ref|ZP_08340371.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403699|gb|EGG83253.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 241

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +++  +     +    +   + +    L ++   D+  ++  L       +E
Sbjct: 10  LVVEDDEPIRNLIVTTLEMEKYKFDTAENGKQAIMLAAANNPDIILMDLGLPD--MDGIE 67

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR+ S VP+I IS     +  +   D G DD + KP    E+ AR+ A  RR++  
Sbjct: 68  VIRKIRSWSVVPIIVISARSDERDKVAALDVGADDYLTKPFSVVELSARLRATIRRVQYI 127

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 + +  + G + +       +V G    L   E  +L  L  N GK +    I  
Sbjct: 128 MHTDNTNESMFQNGDLMIDYSAGVVKVSGVEIHLMPLEYSLLCLLAQNVGKVLTYQFILE 187

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++       + + +  +++ LRKKL  +K     + +   +GY +
Sbjct: 188 KVW-PNGIGSDISSLRVYMTSLRKKLEKDKANQTYIQTHIGVGYRM 232


>gi|227819020|ref|YP_002822991.1| two-component transcriptional regulator [Sinorhizobium fredii
           NGR234]
 gi|227338019|gb|ACP22238.1| two-component transcriptional regulator [Sinorhizobium fredii
           NGR234]
          Length = 229

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++D         G++     +             D++ ++  +       L
Sbjct: 4   ILVVDDEPHIRDVICFAIERAGMTSVVARNGAEAMMAFRRGNVDLAILDIGMPE--MDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S +P++  S        +   + G DD V KP   RE++ARV AI +R   
Sbjct: 62  EVCRRIRTESALPVLFPSARDDEIDRVVGLEIGGDDYVTKPFSPRELIARVKAILKRANG 121

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           +    +     GPIR+  D R          L   E  IL  ++A       + Q+ +A 
Sbjct: 122 TAGEQQLHLTRGPIRLDRDSRSVTYDDLDVGLTAVEFAILATMLARPNTVHTREQLMAAA 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG     V +  ++SH+  +R K  N      + +   +G+ +
Sbjct: 182 YGAGIH-VADRTIDSHVRNIRAKFSNLGCTTVIATVHGVGFKL 223


>gi|270308399|ref|YP_003330457.1| DNA-binding response regulator [Dehalococcoides sp. VS]
 gi|270154291|gb|ACZ62129.1| DNA-binding response regulator [Dehalococcoides sp. VS]
          Length = 222

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +        G+ G  +E        E+   +   D+  ++  L  K    +
Sbjct: 3   ILLVDDDKALCQTLKRALGELGHVVEYACDGISGEYFARNGEFDLMILDIGLSDK--NGI 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R++RA    +P++ ++   +L++ +   D+G DD + KP  + E+ AR+ A+ RR  
Sbjct: 61  EVCRMVRAEGAALPILMLTAKDTLESKVKSLDAGADDYLCKPFAYSELFARIRALQRRAS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V     E G I   +   + +       L   E ++LEY +      + ++ +   ++G
Sbjct: 121 RVMAPVVEIGGIFFNNLSHEVKNGNNEIKLTSAEFQMLEYFITMPNVLITRSMMEEHLWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             +     N ++S I KLR+KL       P+ + R  GY +D
Sbjct: 181 A-ESISASNSIDSLIKKLRQKLGWDARTGPIKTLRGAGYRLD 221


>gi|90410002|ref|ZP_01218019.1| hypothetical DNA-binding response regulator [Photobacterium
           profundum 3TCK]
 gi|90329355|gb|EAS45612.1| hypothetical DNA-binding response regulator [Photobacterium
           profundum 3TCK]
          Length = 225

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 95/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D    ++       + G  ++  +       + +S    +  ++  L       +
Sbjct: 3   ILVIEDDLTTREFIAKGLREHGFVVDEADDGHKGLMMATSCEYQLVILDRMLPI--LDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   IRA  +Q P++ +S   S++  +    +G DD + KP    E++AR   + +R  
Sbjct: 61  KVLAAIRATENQTPILILSAMDSVEDRVTGLTAGSDDYLTKPFALAELIARAQILVKRHH 120

Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            S           +R+            +  L ++E  +L+YL+ +    V++  +F ++
Sbjct: 121 SSTKIVTEYVYDDLRLDMKSHRVWRGERLLNLQQKEFLLLQYLLEHAENVVSRMSLFESV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ HI+ LRKKL        + + R  GY +
Sbjct: 181 W-SYHFDPKTNVIDVHIANLRKKLEENGELSLIHTIRGAGYVL 222


>gi|296162888|ref|ZP_06845668.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295886859|gb|EFG66697.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 220

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D  L+  G      D G++++  +         ++   ++  ++  L    G ++L
Sbjct: 4   LLVEDDDLIGSGVEEGLRDAGMTVDWAHDGREAMLALTTTEYELVVLDLGLPKLSGTELL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R  R     P++ ++   ++   +    +G DD + KP    E++AR  A+ RR   
Sbjct: 64  DWLRGRRD--DTPVLVMTARDTVADRVGGLTAGADDYLGKPFDLTELIARCRALLRRAHG 121

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    E   + V          G   PL  RE  +L  L+ ++G  +++ ++  ++YG 
Sbjct: 122 RSVETIEYQDLSVDPSTFTVTRNGLRQPLTSRECAVLVELLTHQGTPLSRARLEESLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E VE N +E H+S LRKKL    G   + + R +GY ++
Sbjct: 181 WQEEVESNAIEVHVSNLRKKL----GPGLIRTIRGVGYVVE 217


>gi|239995632|ref|ZP_04716156.1| osmolarity response regulator [Alteromonas macleodii ATCC 27126]
          Length = 240

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   + +P+I ++        +   + G DD + KP + RE+LAR  A+ RR  
Sbjct: 66  SICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRS 125

Query: 121 VSN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E G  ++    R+         L   E  +L+ L+ +  + +++ +
Sbjct: 126 SEAPGAPSKDVQIVEFGNYKLNLATREMTAGDTPLTLTSGEFAVLKSLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVF 233


>gi|171059210|ref|YP_001791559.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170776655|gb|ACB34794.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 232

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 86/227 (37%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +     A      + L+            +    D   ++  L        
Sbjct: 4   LLLIDDDEHLAAPLAAYLRRFDLDLDHAERPSLGLQRLAGGGYDAVILDVMLPE--MDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  SQ+P++ ++    +   +   + G DD + KP   RE+ AR+  I RR + 
Sbjct: 62  EVCREIRKTSQIPILMLTARGDVMDRVIGLELGADDYLPKPFEPRELAARLQTILRRQRA 121

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                  VS        + +  + R   VQG    L   E  +L  L     K  ++  I
Sbjct: 122 PAPAAAAVSTTPLVFDGLVIDLERRQVLVQGRPVELTGTEFELLVLLAREPQKVFSRDDI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + G   + +    V+  +S+LRKKL      D + + R  GY+ 
Sbjct: 182 LIRLRGQESDDLFTRAVDILVSRLRKKLEP---LDCIKTLRNAGYAF 225


>gi|220920110|ref|YP_002495411.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219944716|gb|ACL55108.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 225

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V +  +A     G +++        + +      D+  ++  L   G    
Sbjct: 3   ILLVEDTQDVGEAIVARLRTLGHAVDWERDGAMGDAVLEVQPYDLVILDVNLP--GLDGF 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + +RA   + P++ ++    +   +   D G DD + KP   RE+ ARV A+ RR  
Sbjct: 61  AILKRMRARRGRTPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++N    G + +    R   V G+   L RRE  ++E L A  G+   K ++   +  
Sbjct: 121 GHADNAIACGNLSLDRAARSASVGGQPLDLTRREWTLIEILAARPGRIFGKAELLDRL-S 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F+E   EN +E  +++LR+KL        + + R LGY +
Sbjct: 180 TFEEEPSENALEQIVARLRRKLAQAGAEPEIRTLRGLGYQV 220


>gi|153825536|ref|ZP_01978203.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
 gi|153828342|ref|ZP_01981009.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
 gi|261211276|ref|ZP_05925565.1| DNA-binding response regulator [Vibrio sp. RC341]
 gi|148876172|gb|EDL74307.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
 gi|149740821|gb|EDM54912.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
 gi|260839777|gb|EEX66388.1| DNA-binding response regulator [Vibrio sp. RC341]
          Length = 240

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGLS 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R +R  +  +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSSEETIIEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|332187583|ref|ZP_08389319.1| response regulator [Sphingomonas sp. S17]
 gi|332012331|gb|EGI54400.1| response regulator [Sphingomonas sp. S17]
          Length = 229

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D     D       ++G  ++   +     +  +    D   ++  L   G   +
Sbjct: 5   ILLIEDDRSTADYIANGLREEGFLIDHAANGRDGLFHATDGSYDCIILDRMLP--GMDGM 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
                IRA     P++ +S   S +  +    SG DD + KP    E+LARV  + RR  
Sbjct: 63  AALAAIRAAGIASPVLILSALSSPEDRVAGLTSGSDDYLTKPFVFAELLARVRLLIRRGS 122

Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           V+ N  +T      + +          G+   L  RE R+LEYL+ +  + V +T +   
Sbjct: 123 VTTNAPQTKLVCDDLEMDLLAHRVRRAGKPIDLQPREYRLLEYLLQHVDQVVTRTMLLEG 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  F      NV + HIS+LRKK+        + + R  GY +
Sbjct: 183 VWD-FHFDPNTNVTDVHISRLRKKIDEGFARPLLHTVRGSGYKL 225


>gi|317488360|ref|ZP_07946918.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325830811|ref|ZP_08164195.1| subtilin biosynthesis regulatory protein SpaR [Eggerthella sp.
           HGA1]
 gi|316912532|gb|EFV34083.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325487218|gb|EGC89661.1| subtilin biosynthesis regulatory protein SpaR [Eggerthella sp.
           HGA1]
          Length = 220

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   +++    + G DG  +    +   E       R D+  ++  +   G    
Sbjct: 4   ILAVDDDEAIRNLLGRVLGKDGHDVRC-AACAEEALALKLDRYDLVLLDVMMP--GTDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR     P++ ++   S    +     G DD + KP    E+ A+VAA  RR + 
Sbjct: 61  ELCRAIRGSVDAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRAKVAAHLRRERR 120

Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +    G +R+    R+  V     PL + E  + E+L  + G+  ++ QI   + G 
Sbjct: 121 ERKHALSFGALRLDLASREAYVGEAAVPLTKTEFDVCEFLARHPGQAFSRDQIVENVLG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +D     + +  H++  R KL+   G +P+D+   +GY 
Sbjct: 180 WDAESAASTISVHVANARAKLKAA-GAEPIDTVWGVGYK 217


>gi|58040033|ref|YP_191997.1| two component response regulator [Gluconobacter oxydans 621H]
 gi|58002447|gb|AAW61341.1| Two component response regulator [Gluconobacter oxydans 621H]
          Length = 241

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 86/229 (37%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +   +             ++    +  ++  L   GE  L
Sbjct: 9   LLVVDDDREIRELLSQFLERNHFRVTAARDAREARKAWANGHYQLVVLDLMLP--GESGL 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R+   VP+I ++        +   +SG DD V KP + RE+LAR+ A+ RR   
Sbjct: 67  EVARWLRSQDNVPIIMLTAMSDETDRIIGLESGADDYVAKPFNPRELLARIRAVLRRTVD 126

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +       +    R      G    L   E  +L  L+    + + +  
Sbjct: 127 VEDKRQAADTRKIHFAGWCLDPVRRRLLNPDGAEVSLTGGEYDLLMALLERANRVLTRDM 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           +   + G       +  ++  IS+LR+KL +       + + R  GY +
Sbjct: 187 LLELLRGR-QAGPFDRAIDVAISRLRRKLEDDGRNAQVIKTVRGGGYVL 234


>gi|332670569|ref|YP_004453577.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332339607|gb|AEE46190.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 240

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 11/223 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   +          DG ++   +       +    R DV  ++  L   G   +E+ R
Sbjct: 17  DDEVALATLVGGYLERDGFAVTLCHDGAQAVDVVREVRPDVVVLDLGLP--GVDGVEVCR 74

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125
            +R  +   ++ ++       TL     G DD V KP   RE++ARV  + RR + S   
Sbjct: 75  RLRTFTDCYVVMLTARAEEVDTLIGLSVGADDYVTKPFSPRELMARVGVLLRRPRQSTAV 134

Query: 126 -------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   + G +RV    R+  + G    L R E  IL  L +  G  +++  +  A++
Sbjct: 135 PPAGPPPLQVGALRVDVGARETHLDGRRVELTRTEFDILAALASRPGVVLSRRALIDAVW 194

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G      ++++V+ H+  +R+KL +       V + R +GY I
Sbjct: 195 GPG-WVGDDHLVDVHVLHVRQKLGDTAKEQRFVRTVRGVGYRI 236


>gi|311898863|dbj|BAJ31271.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 237

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + D        +G    G           +  R     ++  L       LE
Sbjct: 14  LVVDDEPDLVDVLCGALRYEGWQTRGVTGGLAAVAAAADWRPHAMVLDVMLPDF--DGLE 71

Query: 63  LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R +     +V ++ ++   +++  +    +G DD V KP    E++AR+  + RR   
Sbjct: 72  VLRRVHGTDPEVRVLLLTARDAVEDRIAGITAGGDDYVTKPFSLEEVVARLRGLLRRTAP 131

Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               +      G +R+    R+    GE   L   E  +L +LM +  + ++K Q+  A+
Sbjct: 132 PGPAAPGTLAVGDLRLDPATREARRGGEPVDLSPTEFALLRHLMEHPRQVLSKAQLLDAV 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + +VVE +IS LR+K+ +      + + R  GY +
Sbjct: 192 W-SYDFGGQAHVVELYISYLRRKI-DAGRAPMIHTVRGAGYVL 232


>gi|255523314|ref|ZP_05390284.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188247|ref|ZP_06856639.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512968|gb|EET89238.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047373|gb|EFG86815.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 232

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 10/227 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  + DD   + +   +    +G  +E FN         ++   D+  ++  +       
Sbjct: 5   LIYIGDDEVNICNIIKSFLVKEGFEVELFNDGLSVLEAFNTKEPDMLILDIMMPE--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             L  +IR  S +P+I +S   +    +     G DD + KP    E++AR+ +I+RR++
Sbjct: 63  FSLCSLIRQKSCIPIIIVSAKDTEPDKIAGLTLGCDDYLTKPFSPMELIARIKSIFRRIE 122

Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +        N     G I V  D ++    G    L   E   + YL+ N+ + V+++++
Sbjct: 123 LDKKQHIEDNKVITIGDISVNLDIKEIHYHGNNIGLTGMEFSFIYYLITNKNRAVSRSEL 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              ++G F+  VE    +  + ++RKKL N      +D+    G+ I
Sbjct: 183 LDKVWG-FENDVETRATDDMVKRIRKKLLNAGSSLKIDTVWGFGFKI 228


>gi|325479620|gb|EGC82712.1| subtilin biosynthesis regulatory protein SpaR [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 219

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + + +DD   + D    +   +   ++ + +    ++    ++ D+  ++  +   G   
Sbjct: 3   LILAVDDELDMLDLIENILKKNNHQVDVYQNPLDIDY-SKLSKYDLILLDVMMP--GIDG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +   + IR     P++ ++     +  ++    G DD + KP    E+LAR+ A  RR K
Sbjct: 60  ISFCKEIRGKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGAAELLARIEAHLRREK 119

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G IR      +  V  E   L + E +I E L   +G+  ++ QI+  ++G
Sbjct: 120 RERHTSLNLGEIRFDLSSNEVFVVEEKVHLTKSEYQISELLAKRKGQVFSRDQIYELVFG 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            FD   + + +  HI  +R K   K G +P+++   +GY   WN
Sbjct: 180 -FDGIGDASAISEHIKNIRAKF-QKYGENPIETVWGIGYK--WN 219


>gi|148378772|ref|YP_001253313.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931201|ref|YP_001383160.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936292|ref|YP_001386708.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288256|emb|CAL82330.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927245|gb|ABS32745.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932206|gb|ABS37705.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 230

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      +        +   S             D+  ++  L   G    
Sbjct: 7   ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYNWDMVLLDLMLP--GMDGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL   IR    +P+I IS        ++    G DD + KP    E+ AR+ +  RR K 
Sbjct: 65  ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +N       +   I +  D R+  +  +   L  RE  IL+ LM    K   K  +F +
Sbjct: 125 FSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKANLFES 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++   +   ++N +  HIS LR KL       + + +   +GY +D
Sbjct: 185 VW-SSEYLCDDNTINVHISNLRNKLSKAGTDNEYIQTIWGIGYKLD 229


>gi|28900774|ref|NP_800429.1| transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365679|ref|ZP_05778193.1| transcriptional regulator [Vibrio parahaemolyticus K5030]
 gi|260896089|ref|ZP_05904585.1| transcriptional regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902119|ref|ZP_05910514.1| transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|28809220|dbj|BAC62262.1| transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088153|gb|EFO37848.1| transcriptional regulator [Vibrio parahaemolyticus Peru-466]
 gi|308109947|gb|EFO47487.1| transcriptional regulator [Vibrio parahaemolyticus AQ4037]
 gi|308111791|gb|EFO49331.1| transcriptional regulator [Vibrio parahaemolyticus K5030]
 gi|328470687|gb|EGF41598.1| transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 220

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 103/223 (46%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G   E  +     +      + D+  ++  L   G+ V 
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGY--ECLHVERIADVEPQWKKADLVILDRQLPD-GDSVQ 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            LP   +    VP+I ++   +++  +   DSG +D + KP    E+ AR+ A  R    
Sbjct: 62  HLP-EWKKIKDVPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQLRAPDS 120

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + + ++  T  + +    R+   +G++  L R E  +L +L +N G+   + ++   +
Sbjct: 121 ADQANADKVMTKDLEIDRATREVIFKGDLITLTRTEFDLLLFLASNLGRVFTRDELLDHV 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 WG-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 218


>gi|255292688|dbj|BAH89795.1| two component response regulator [uncultured bacterium]
          Length = 219

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 105/222 (47%), Gaps = 11/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            +LI+D   +          DG S++    L+   + + +++ + +        G+G   
Sbjct: 3   ILLIEDDTTLGAAVRDQIAADGQSVDWVTRLDAAADAMSTTSYDLLLLDLMLPDGRGIGF 62

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L   + +R    V P+I ++    +   ++  ++G DD + KP    E+ AR+ ++ RR 
Sbjct: 63  L---KGLRTRGDVTPVIILTALDQVSDRIEGLNAGADDYLVKPFDLSELSARIGSVARRY 119

Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             + N     GP+ +    R     G   PL  RE  + E  +A  G+ ++K Q+   +Y
Sbjct: 120 SGNPNPILTHGPLDIDLAARSVHRDGRHVPLTAREWALFEAFLARPGQLLSKAQLEEKLY 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             FD  VE N +E H+S+LRKKL + +    ++++R +GY +
Sbjct: 180 -AFDAEVESNTIEVHVSRLRKKLGSAI----IETERGMGYRL 216


>gi|210620624|ref|ZP_03292148.1| hypothetical protein CLOHIR_00091 [Clostridium hiranonis DSM 13275]
 gi|210155233|gb|EEA86239.1| hypothetical protein CLOHIR_00091 [Clostridium hiranonis DSM 13275]
          Length = 231

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +     A+   +  S++     E   +   ++  D   ++  +       +
Sbjct: 6   LLLAEDEKELSKALKAILESNRYSVDAVYDGEDAIYYMENSEYDAVILDIMMPKV--DGI 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              + +R     VP+I ++    +   +   DSG +D + KP   +E+LAR+  + R   
Sbjct: 64  TALKTVREKGIDVPIIMLTAKSEVDDKVLGLDSGANDYLTKPFSAKELLARLRVLTREKS 123

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           VSN +    G + + +   +       F L  +E +++E  M N    V+  Q+   ++G
Sbjct: 124 VSNTSIITVGNVSLDTTTFEMYSPNGKFRLTNKEYQMMEIFMRNPKHIVSTEQLIEKVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D  +E NVV  +IS LRKKL +      + + R LGYS++
Sbjct: 184 -YDSDMENNVVWVYISYLRKKLISLNANIIIKANRNLGYSLE 224


>gi|261407257|ref|YP_003243498.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283720|gb|ACX65691.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 224

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++      F  +G  +        E   +     D+  ++  +    E  L
Sbjct: 4   ILIVDDEADLRKLLTDYFEINGYFVMTAKDSR-EAMRKVELGPDLVLLDINMPE--ESGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR     P++ ++        +  F +G DD + KP   RE+ ARV A  RR + 
Sbjct: 61  EICERIRGFVSCPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHLRREQR 120

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +A       + +    R+   Q +  PL ++E  I+E L  N G    K +I+  I+
Sbjct: 121 VPTKASVRFNHDLVINYTARELYFQDKRIPLAKKEFGIIELLSMNPGMVFEKERIYEKIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           GL DE  + +V+  HI ++R K +     D +++   +GY 
Sbjct: 181 GL-DEEGDSSVIAEHIRRIRNKFKEYGCSDRIETVWGVGYK 220


>gi|149365128|ref|ZP_01887163.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|165926923|ref|ZP_02222755.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165935925|ref|ZP_02224495.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|167422671|ref|ZP_02314424.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167467549|ref|ZP_02332253.1| putative two-component response regulator [Yersinia pestis FV-1]
 gi|218930056|ref|YP_002347931.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|229838602|ref|ZP_04458761.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229899168|ref|ZP_04514311.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|115348667|emb|CAL21612.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|149291541|gb|EDM41615.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|165916070|gb|EDR34677.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921274|gb|EDR38498.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|166958378|gb|EDR55399.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|229687570|gb|EEO79643.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694968|gb|EEO85015.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
          Length = 235

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D A +++G + +   +G       +      L    + D   ++  +        
Sbjct: 3   ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPE--LDSY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++ R IR H  Q P+I +S        +   + G DD ++KP    E+ AR+  I RR L
Sbjct: 61  KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120

Query: 120 KVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +     AE      G + VF +            L  RE  IL YL  ++G+ V +  +F
Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVVTRDMLF 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            A++G +D   +   ++ HISKLRK +  + +    + +    GY 
Sbjct: 181 DAVWG-YDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYR 225


>gi|171056968|ref|YP_001789317.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774413|gb|ACB32552.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 235

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------ 55
            +L++D  ++     A    +G++++    +   +   +S R D+  ++  L        
Sbjct: 3   LLLVEDDPMIGSSLRAALRLEGMAVDWVRDVAAAQATLASERFDLVLLDLGLPPGRAASN 62

Query: 56  ---KGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
               G   L L R +R+     P+I ++        +   D+G DD + KP    E+ AR
Sbjct: 63  LTEPGTDGLSLLRSLRSREDSTPVIVLTARDGPGDRVRGLDAGADDYLVKPFELDELAAR 122

Query: 112 VAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ RR    + +      + +    R     G+   L  RE  +LE LM   G  + +
Sbjct: 123 IRAVMRRHSGRAQSVLSHRGVTLDPATRQVTRDGQPVLLSAREIAVLEALMTRPGAMLTR 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            Q+   +YG + E +E N V  +I +LR+KL    G   + + R LGYS+
Sbjct: 183 AQLEDRLYG-WGEEIESNAVSVYIYQLRRKL----GPGFIRTMRGLGYSL 227


>gi|134299699|ref|YP_001113195.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134052399|gb|ABO50370.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 234

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 97/231 (41%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++         G  +    + +    L+    E    I   ++  G    
Sbjct: 5   ILIVEDDLGIRELLRLYLSKHGYQV--VMAQDGIRALEIYELEQPDLILLDILLPGVDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + + +R +S VP+I IS     +  ++  + G DD + KP     ++ARV A  RR   
Sbjct: 63  SVCQELRKYSNVPIIFISCKKDSKDIIEGLELGADDFITKPFDPDVLMARVQASLRRAPI 122

Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                     V+    + G + +     +  + G +  L  +E ++L +L+ +  +  + 
Sbjct: 123 FRRIASSRKIVNRQVIKYGNLEIDMANFEVRLDGNLVTLSAKELQLLIFLVQHPNQIFST 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            Q++  ++GL D   +   V  HIS +RKK+  N    + + + R +GY  
Sbjct: 183 EQLYLKVWGL-DSIGDNRTVMVHISNIRKKIESNPSQPERILNIRGIGYKF 232


>gi|121726691|ref|ZP_01679916.1| transcriptional regulator OmpR [Vibrio cholerae V52]
 gi|147673571|ref|YP_001218202.1| osmolarity response regulator [Vibrio cholerae O395]
 gi|262170044|ref|ZP_06037733.1| two-component system response regulator OmpR [Vibrio cholerae RC27]
 gi|4433393|gb|AAD20723.1| response regulator homolog OmpR [Vibrio cholerae]
 gi|121630852|gb|EAX63234.1| transcriptional regulator OmpR [Vibrio cholerae V52]
 gi|146315454|gb|ABQ19993.1| transcriptional regulator OmpR [Vibrio cholerae O395]
 gi|227014600|gb|ACP10810.1| transcriptional regulator OmpR [Vibrio cholerae O395]
 gi|262021452|gb|EEY40164.1| two-component system response regulator OmpR [Vibrio cholerae RC27]
          Length = 240

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGLS 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R +R  +  +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVV 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|319790958|ref|YP_004152598.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315593421|gb|ADU34487.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 240

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A +           G +                   D+  ++  L       L
Sbjct: 9   LLMIEDDARLAQMVGEYLTQSGFAFNHAGDGASGLEQLQQHAPDLVILDLMLPDT--DGL 66

Query: 62  ELPRIIRA----HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
           E+ R IRA     S+V ++ ++        +   + G DD + KP   RE+LAR+ A+ R
Sbjct: 67  EVCRRIRALPGPISKVSVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAVLR 126

Query: 118 RLKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           R   +   +E       G + +  + R   V G +  L   +  +L  +    G+ + + 
Sbjct: 127 RRSENATESEASTVMRFGTLEIDRNARTVSVAGALADLTSYQFDLLVAMAERAGRVLTRD 186

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           QI  A+ G   EA +   ++ H+ ++R  +  +      + + R +GY  
Sbjct: 187 QIMEAVRGRELEAFD-RSIDVHMGRIRAAIEVDAKNPKRILTVRGVGYVF 235


>gi|325660821|ref|ZP_08149449.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472895|gb|EGC76105.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 233

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   V++         G   +   + +      SS   D+  ++  L       
Sbjct: 5   LILVVEDDTSVRNLITTTLKAHGYRYQTAANGQTAILEASSYNPDIVLLDLGLPD--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E+ R IR+ S +P+I IS        +   D+G DD + KP    E+LAR+    RRL 
Sbjct: 63  VEIIRKIRSWSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQRRLA 122

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 +   +    G + +        + G+   L   E ++L  L  + GK +  T I
Sbjct: 123 IMQGGTQEEKSTFTNGKLMLDYGAGCAYMDGKELHLTPIEYKLLCLLSKHVGKVLTHTYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
              I+G   E  +   +  +++ LRKK+ ++      + +   +GY +
Sbjct: 183 TQEIWGRSWEN-DVASLRVYMATLRKKIESEPDMPQYIQTHIGVGYRM 229


>gi|298385740|ref|ZP_06995298.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|298261881|gb|EFI04747.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 228

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V    +    ++G              L  +   D+   +  L        
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHTFDLVISDIVLP--KMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR  + ++P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R+ 
Sbjct: 62  ELTKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVS 121

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            +R+    +D E       L  +E  +L Y++ N  + +++ +I   
Sbjct: 122 GNVPELPQELVYADLRIDLQRKDVERNNVPIKLSPKEYNLLLYMVENAERVLSRVEIAEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++         N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 182 VWNTH-FDTGTNFIDVYINYLRKKIDRNFEPKLIHTKAGMGFIL 224


>gi|199596926|ref|ZP_03210359.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258507695|ref|YP_003170446.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|199592059|gb|EDZ00133.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257147622|emb|CAR86595.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|259649042|dbj|BAI41204.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 231

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +  I  F  D    E   +     +L      D   ++  L        
Sbjct: 7   ILVIEDDPDLNES-IVDFIRDFSQPEAALTGADGLYLAEEGIFDAIVLDIMLPE--LNGF 63

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +RA   + P++ ++   +L   +  F+ G DD + KP H  E++ R+ A+ +R  
Sbjct: 64  DLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRTG 123

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +    GP  V  +  +  +  +   L  +E  +L YL+ N+   + K QIF  ++
Sbjct: 124 HFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRLW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD     +VVE ++S LRKKL+       + + R +GY  
Sbjct: 184 G-FDSDTAVSVVEVYMSNLRKKLKPMQADVWIKTIRNVGYIF 224


>gi|170741724|ref|YP_001770379.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168195998|gb|ACA17945.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 230

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +          +G ++    +           R D   ++  L        
Sbjct: 5   LLLIDDDRRLAAMVAEYLSAEGYAVACQPTAREGHDALRRERFDAVILDVMLPD--GDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IR HS+VP++ ++        +   + G DD + KP + RE+LAR+ A+ RR + 
Sbjct: 63  ELCRQIRTHSRVPILMLTAKGEDTDRIIGLEIGADDYLPKPFNPRELLARIRALLRRQRA 122

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               R + G +++    R   + G    L   +  +L     + G+ +++ ++   + G 
Sbjct: 123 PQEARLDFGRLQIDPGSRVVRLDGVERRLTSHQFDLLLAFATHAGRVLSRERLMDLVKGE 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            D    +  ++ H+S+LR  + +       + + R  GY  
Sbjct: 183 -DLDAFDRSIDVHVSRLRALIEDDPRHPRRLLTIRGAGYVF 222


>gi|297194557|ref|ZP_06911955.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152324|gb|EFH31669.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 226

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 7/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   V++G        G  +    +   E  L + A      +   L+  G   ++
Sbjct: 5   LLIEDDPSVREGVELGLRRRGHEVR--TAATGESGLAALAEFRPDLLLLDLMLPGMNGVQ 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  SQ+P+I ++        +   ++G DD + KP     I AR+ A+ RR++  
Sbjct: 63  VCRRVREDSQLPIIMLTARGDDFDVVIGLEAGADDYIVKPARTEVIEARIRAVLRRMEAP 122

Query: 123 NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             R      G + V   G      GE   L   E ++L +L A   +  ++ Q+   ++ 
Sbjct: 123 GGRPSVEFHGDLAVDRAGLTVAKNGERLALAPSEMKLLLHLSAAPEQVFSRQQLLEHVW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
                 +  +V++ + +LR K+ +  G    + + R  GY  
Sbjct: 182 EHSYHGDARLVDACVRRLRNKIEDIPGSPRYIQTLRGFGYRF 223


>gi|294782843|ref|ZP_06748169.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA]
 gi|294481484|gb|EFG29259.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA]
          Length = 227

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++          G  +      E    L +    DV  ++  L  K     
Sbjct: 7   ILIIEDDKNIQRLLSLELKHKGYMVSSAYDGEEGLELFTKNSYDVVLLDLMLPKK--SGK 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +  R  +  P+I  +   ++   ++  D G +D + KP    E+LAR+  + R  + 
Sbjct: 65  ELCQEFRKLTDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNREN 124

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S+++       I++    +   +  +   L + E  ILEY M NR    ++ +I + ++G
Sbjct: 125 SSDKQIYFENEIKLDLTTKKVFINQKEISLTKTEFLILEYFMKNRAISCSREKILTGVWG 184

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   EE +V+ +I+ LRKK+        + + R  GY   +
Sbjct: 185 -YDFDGEEKIVDVYINSLRKKMDT--ESKYIHTIRGFGYIFQY 224


>gi|290962001|ref|YP_003493183.1| two component positive transcriptional regulator PhoP [Streptomyces
           scabiei 87.22]
 gi|260651527|emb|CBG74650.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL
           POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22]
          Length = 242

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 99/224 (44%), Gaps = 10/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D         G  +    +++           ++  ++  L       +
Sbjct: 19  LLVVDDEPAILDTVGRFLRFIGYEVRTAATVKEALAEARDHLPELILLDIMLPD--GDGI 76

Query: 62  ELPRIIRAHSQVP--LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           E+ R +RA   +P  ++ ++   + +  +    +G DD V KP    E+ AR+ A+ RR 
Sbjct: 77  EVMRRLRADG-LPHAVVFLTARDTRKDLVKALAAGGDDYVTKPFGLDEVAARIGAVLRRT 135

Query: 120 KV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +     ++      + +          G    L   E R+L YLM + G+ V + Q+   
Sbjct: 136 RRPEHESSVLRVADLELDPATHSVRRGGTAIGLSPTEFRLLRYLMLHSGRIVPRAQLLEH 195

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   ++ VV ++IS LR+KL + LG   + ++R +GY+I
Sbjct: 196 VW-SYDFNGDDTVVATYISYLRRKL-DALGPPLIHTQRGIGYAI 237


>gi|253576700|ref|ZP_04854027.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843910|gb|EES71931.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 232

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 98/225 (43%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           ++++D   ++   +     +G  + E  +  E    LQS    D++ ++  +   G    
Sbjct: 5   LILEDEESIRSFIVINLKRNGFDVLEAADGNEALSKLQSVPDIDIALLDVMVP--GIDGF 62

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R IR  ++ + +I ++     Q  +     G DD V+KP    E++AR+ ++ RR+ 
Sbjct: 63  EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVN 122

Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V    +      +GP  +    +  +  G +  L   E  ++++ +      +++  +  
Sbjct: 123 VYRESSAKVTFTSGPFTLDLISKQFKKNGRLIELTPTEFSLIQFFLEKENTPLSRDVLLD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
            ++G  +   +  +V+ +I +LR+K+  N      + +    GY 
Sbjct: 183 HVWGK-EYMGDPKIVDVNIRRLRQKIETNPSEPAFLQTVWGHGYK 226


>gi|109897312|ref|YP_660567.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109699593|gb|ABG39513.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 235

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60
            +LIDD   + +         G ++   +  E      +S    D+  ++  L       
Sbjct: 6   LLLIDDDQALTELLQEYLSAQGYTIHVASDGEAGLLAAKSGQHYDLIILDVMLPKV--DG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ + +R+    P++ ++        +   + G DD + KP +HRE+ ARV AI RR+ 
Sbjct: 64  FEVLKRLRSTHVTPVLMLTAKGDDFDRILGLELGADDYLAKPFNHRELSARVKAIVRRVD 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   K   N  E G + +    +      +   L   E  +L+ LM+     V K 
Sbjct: 124 IQAGLQSDKQKQNTIEIGDVELNIAAQTVACNAQQVELTGTEFAVLKLLMSCSPDLVPKQ 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I   + G    A +   ++ H+S LRKKL +    D + + R +GY 
Sbjct: 184 AISEQVLGRKLAAFD-RSIDMHVSNLRKKLSHFSDHDKIKTHRGVGYV 230


>gi|254410237|ref|ZP_05024017.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183273|gb|EDX78257.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 215

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 96/200 (48%), Gaps = 6/200 (3%)

Query: 24  VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYP 82
            +++  +  E      ++   D+  ++  L       + L + +R++  Q+P++ I+   
Sbjct: 14  YAVDTVSDGEAAWVQVNTLNYDLILLDMMLP--KLDGIHLCQRLRSNGYQMPVLMITARD 71

Query: 83  SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPE 141
           +    +   D+G DD + KP+   E+LAR+ A+ RR + VS    E G +R+     +  
Sbjct: 72  TSTDKVIGLDAGADDYMVKPLDIPELLARIRALLRRGQTVSPPILEWGQLRLDPGTYEVC 131

Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201
              +   L  +E  +LE L+ N  + ++++ I   ++ + D   +E+ ++ H+  LR KL
Sbjct: 132 YGDQTLRLTPKEYSLLELLIRNGRQIMSRSAIIEHVWSI-DNPPKEDTIKVHVKSLRSKL 190

Query: 202 RNKLGF-DPVDSKRFLGYSI 220
           R      D +++   LGY +
Sbjct: 191 RAVGAPEDLIETVHGLGYRL 210


>gi|77359802|ref|YP_339377.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874713|emb|CAI85934.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 230

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G+ ++  +  +       S   D+  ++  L   G+   
Sbjct: 4   ILLVEDDLGLQQLTKDYLEHNGLEVDVLDRGDEVFTYLESNPVDLIILDVMLP--GKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R     P++ ++        +   + G DD V KP   R +LAR++A+ RR + 
Sbjct: 62  SVCRQVRDKYTTPILMLTAKGEDFDQVIGLELGADDYVIKPAEPRVLLARISALLRRGQP 121

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +    + G + +    R  ++ G    L   E  +L  L +N G+ +++  +   + 
Sbjct: 122 NLKATEELQFGDLFIDKTSRIVKLSGAEIVLTSHEFELLWLLASNAGEVLSREHVHQHMI 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           G       +  V+  +S++RKKL +       + +    GY
Sbjct: 182 GR-QYDGLDRTVDVRVSRIRKKLGDNSDKPYRIKTVWGQGY 221


>gi|320106273|ref|YP_004181863.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319924794|gb|ADV81869.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 227

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +  +    + G++++        + L   A  D   ++  L   G+   E
Sbjct: 4   LLVEDEIRLAENIVDALRETGLAVDHAADGRLGQELALQANYDAIVLDLMLP--GKSGQE 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +R A    P++ ++     ++ +   +SG DD ++KP    E+LARV A+ RR K 
Sbjct: 62  VLRGLRHAKISTPILILTAQEGKESVIQLLNSGADDYLSKPFDLGELLARVKALIRRGKG 121

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++       + V +  +    +G    L   E RILEYL+      V+K ++   +Y  
Sbjct: 122 TADPVLRFSDVEVDTIQQMVTRKGNRLELSPTEYRILEYLVHRPRAVVSKRELLEHLYD- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           FD     NV+E HIS LR+KL    G   +++ R  GY +
Sbjct: 181 FDWEHHSNVIEVHISNLRRKLNVTNGGPVIETLRHRGYRL 220


>gi|296121739|ref|YP_003629517.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296014079|gb|ADG67318.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 235

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 11/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D   + D        +G  +   +  +       +   D+  ++  L       LE
Sbjct: 7   LLIEDERSLIDILTYNLEKEGFEVTSASDGQDGLRRAQAMTPDLVILDLMLPV--IDGLE 64

Query: 63  LPRIIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           + R +R+  ++P   ++ ++        +  F+ G DD V KP   + ++ R+ A+ RR 
Sbjct: 65  VCRQLRSDPKLPNCRILMLTARAEEVDEIVGFNMGADDYVAKPFKVKPLIHRIKALLRRS 124

Query: 120 KV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +    S +   T  I +        + GE   L   E R+L  L  + G+   + ++   
Sbjct: 125 QAGEQSRDVIVTRGIEIDRINHTARLNGEELHLTPTEFRLLWTLARSPGRPFGRNELMDR 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             G  D    E  ++ H+  LR+KL      D V++ R +GY  
Sbjct: 185 CRGE-DANALERTIDVHVRSLRQKLGAL--ADIVETVRGVGYRF 225


>gi|160878516|ref|YP_001557484.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427182|gb|ABX40745.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       + G  +    S             D+  ++  L   G    
Sbjct: 4   ILVVEDDLNINNMLREALEEAGYEVVQAYSGTEAMLNVGMTEFDLILLDLMLP--GMSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  ++     + P+I +S    L + +D    G DD + KP   +E+L R+    RR+  
Sbjct: 62  EFLKLFNKKERTPVIVLSAKDELDSKVDVLSCGADDYITKPFQLKELLVRIEVALRRVNR 121

Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +N       + +     +  + G +  L ++E +ILE L+ +  K  +K +I
Sbjct: 122 NIEKSQDETNQCLSHKDLLLNRSSYEVRLAGNLISLTKQEYKILELLLLHPNKVFSKQEI 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +  +    E+  +  HIS +R KL+     D +D+   +G+ +
Sbjct: 182 YNYAWEEY-FIGEDKTINVHISNIRMKLKKVTEDDYIDTVWGIGFKL 227


>gi|90411434|ref|ZP_01219445.1| putative two-component response regulator [Photobacterium profundum
           3TCK]
 gi|90327647|gb|EAS43990.1| putative two-component response regulator [Photobacterium profundum
           3TCK]
          Length = 262

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 84/242 (34%), Gaps = 26/242 (10%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +            +    ++   + L       +  ++  L       L
Sbjct: 21  ILIVEDDNDLAELIGMHLILQNHQVVRATTITKADKLIKENHFSLVILDRGLDD--GDGL 78

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L   +R H    P++ ++   S +  ++  +SG DD + KP    E  ARV AI RR  
Sbjct: 79  TLCHTLRQHENWTPILMLTARDSEKDKVEGLESGADDYLTKPFSVLEFQARVRAILRRES 138

Query: 119 -------------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
                              L           + +       EV  +   L   E  +L +
Sbjct: 139 HNESSSSSQRIQQTESENTLDNQEPVLHFDGLAIKPQSHQVEVNQQPINLTATEFTLLHF 198

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218
           L    G+  +K ++ S ++   D +   + V S +++LR KL         + +   +GY
Sbjct: 199 LAKRPGRVYSKDELLSQVW-HTDFSGYHHTVCSTVNRLRTKLETSHSKHKYIHTIWGVGY 257

Query: 219 SI 220
             
Sbjct: 258 KF 259


>gi|322615749|gb|EFY12669.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620597|gb|EFY17457.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322621776|gb|EFY18626.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627501|gb|EFY24292.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322630808|gb|EFY27572.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637974|gb|EFY34675.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642244|gb|EFY38852.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644965|gb|EFY41497.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651129|gb|EFY47514.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656615|gb|EFY52903.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658727|gb|EFY54984.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322661831|gb|EFY58047.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666423|gb|EFY62601.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672421|gb|EFY68533.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676271|gb|EFY72342.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679640|gb|EFY75685.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684350|gb|EFY80354.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323191832|gb|EFZ77081.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198900|gb|EFZ83998.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323200966|gb|EFZ86035.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209363|gb|EFZ94296.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212950|gb|EFZ97752.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216693|gb|EGA01418.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219810|gb|EGA04289.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226126|gb|EGA10343.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228779|gb|EGA12908.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236610|gb|EGA20686.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239890|gb|EGA23937.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242063|gb|EGA26092.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247497|gb|EGA31452.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250598|gb|EGA34480.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259328|gb|EGA42970.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263795|gb|EGA47316.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265611|gb|EGA49107.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270056|gb|EGA53504.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 229

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  I     +G ++E F             R D   ++  L        EL
Sbjct: 8   LVEDEQGIADTLIYTLQQEGFTVELFARGLPALEKARQQRPDAVILDVGLPD--ISGFEL 65

Query: 64  PRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R +   H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +    TG   +          G    L R E  +L+ L+ +  +  ++ Q+   ++ 
Sbjct: 126 AAPSPVVRTGHFELNEPAAQIAWFGTPLSLTRYEFLLLKTLLLSPERVYSRQQLMDIVWS 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              E  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQETFD-RTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226


>gi|226943895|ref|YP_002798968.1| response regulator, transcriptional regulatory protein
           (two-component), ColR [Azotobacter vinelandii DJ]
 gi|226718822|gb|ACO77993.1| response regulator, transcriptional regulatory protein
           (two-component), ColR [Azotobacter vinelandii DJ]
          Length = 227

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +      G +++          L ++ + D+  ++  L   G    
Sbjct: 3   ILVIEDNRDILANVLDYLELKGYTVDCAQDGLSGLHLAATGQYDLIVLDIMLP--GIDGY 60

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++   +R  A S+ P+I ++   +L   L   +SG DD + KP    E++AR+ A+ RR 
Sbjct: 61  QVCERLRRDAGSETPIIMLTARDALDDRLQGLNSGADDYLLKPFALSELVARIEAVLRRT 120

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + S  R  + G +    D  +    G+   L     ++L  LM      V +  + +A++
Sbjct: 121 QGSRKRQLQVGDLIYDLDTLNVSRAGKQLRLNPIGYKLLAILMQKSPAVVRREFLENALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G  D+  E + + SHI +LR+ L        + +   +GY +  N
Sbjct: 181 G--DDLPESDSLRSHIHQLRQALDKPFDKPLLHTIHGVGYRLAEN 223


>gi|94312408|ref|YP_585618.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356260|gb|ABF10349.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Cupriavidus metallidurans CH34]
          Length = 261

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 93/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++          G+  EG           S    D+  ++  L   GE  L
Sbjct: 29  LLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSLP--GENGL 86

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            L R IR  S +P+I ++    L   +   + G DD V KP   RE++AR+  + RR + 
Sbjct: 87  TLCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSRA 146

Query: 121 --------VSNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      +       R+ +  R   + +  V PL   E R+L   + +  + + + 
Sbjct: 147 DVRRPAPAAPGHEVRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLLTFIEHPNRVLDRE 206

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            + +   G  D  V +  ++  +S+LR+KLR+       + + R  GY  
Sbjct: 207 MLINTARGR-DLDVFDRSIDLLVSRLRQKLRDDPRDSALIRTVRGEGYVF 255


>gi|92114536|ref|YP_574464.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91797626|gb|ABE59765.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 237

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           +IDD A +++   A     G  +    + +    L      D+  ++  +   GE  L L
Sbjct: 10  VIDDDAEIRELLHAYLSQHGFRVVLAENGDAVPSLLRDESPDLLILDIMMP--GEDGLSL 67

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            R +R HS VP+I ++        +   + G DD + KP + RE+LAR+ A+ RR++   
Sbjct: 68  CRDLRRHSNVPIIMLTASSDETDRILGLELGADDYLAKPFNPRELLARIKAVLRRMRPLP 127

Query: 124 NR----AETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +        GP  +    R+     G    L   + ++L   + +  + +++ ++F    
Sbjct: 128 STPSRMVRFGPWCLDRITRELIDDMGNRSRLSGADYQLLGVFLDHPEQVLSRERLFDLSR 187

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G     ++   ++ H+ +LR++L  +      + + R  GY +
Sbjct: 188 GRRAPPLD-RSIDVHVCRLRQRLGEDAQHSQLIRTVRGAGYVL 229


>gi|154503148|ref|ZP_02040208.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149]
 gi|153796142|gb|EDN78562.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149]
          Length = 235

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 11/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      L   +G  +    + +  E L +    ++  I   ++      L
Sbjct: 6   ILVVDDNQEIVYSISELLKYEGYQV--VKAYDGMEALNALEINNIDLILLDVMMPRLNGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
                +R + ++P+I +S        +     G DD V KP +  E++AR+ A  RR + 
Sbjct: 64  SALMKLRENYRIPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELIARIKAHLRRYRA 123

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    ++    G + +    R   V G+   L   E +ILE+LM + G+  +  QI
Sbjct: 124 WGGAAPEADSDTVVNGGLVLDKKRRIILVDGKEVRLTATEYKILEFLMGHLGQVFSAEQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++        EN V  HI  +R+K+  +      V     +GY ++
Sbjct: 184 YENVWKESANYTVENTVMVHIRHIREKIEIDTKKPRYVKVVWGIGYKME 232


>gi|302873321|ref|YP_003841954.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688511|ref|ZP_07630957.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576178|gb|ADL50190.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 226

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   V      +  D G  ++   +         ++  D+  ++  L  K     
Sbjct: 4   ILLIEDNKDVNRMISEVLFDAGYQVKSAYTGIEGINEIKNSNYDLILLDIMLPYK--SGD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R  S  P+I IS    + T +D    G DD + KP    E+LAR+ A  RR   
Sbjct: 62  EILKEMRNFSDTPVIVISAKDMVGTKIDILKLGADDYITKPFDLGEVLARIEATLRRCHK 121

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               N   +   I +  + +   V G    L  +E  ILE L+  +GK   K  ++ +I+
Sbjct: 122 QVHINKVIKYKDIVLDDNSKHVSVNGVEIELTAKEYMILEMLIKYQGKVFTKANLYESIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              +   ++N V++H+S LR KL+     +  +++   LGY +
Sbjct: 182 -KEEYLGDDNAVKTHVSNLRSKLQKANEHEKYIETVWGLGYRL 223


>gi|126737572|ref|ZP_01753302.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126720965|gb|EBA17669.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 225

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 98/223 (43%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +    I      G  ++   S        ++   DV  ++          L 
Sbjct: 4   LLLEDDGEIGKWTIKGLMTAGHVVDWLESGRDALLSATTRDYDVLILDRMTPE--MDGLS 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + + +RA     P + ++    ++  ++  ++G DD ++KP    E+LAR+ A+ RR + 
Sbjct: 62  VLKTLRAAKVMTPALLLTAMGEVEDRVEGLEAGADDYLSKPFAMTELLARITALSRRRQG 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                  + E   + +    +    +GE+ PL  +E ++LE LM ++G+   +  +   +
Sbjct: 122 EATTTLTKLEHKGLELDILAQKCSYKGEIIPLNPKEFKLLEVLMRSKGRVQTRAMLLERV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + + +     +VVE+H+S+LR K+        + + R  GY  
Sbjct: 182 WDI-NFDPATSVVETHMSRLRNKVEKPFDLKLITTVRGAGYVF 223


>gi|167967698|ref|ZP_02549975.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis H37Ra]
 gi|61229967|sp|P0A5Z6|PRRA_MYCTU RecName: Full=Transcriptional regulatory protein prrA
 gi|61229968|sp|P0A5Z7|PRRA_MYCBO RecName: Full=Transcriptional regulatory protein prrA
 gi|90108539|pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
           From Mycobacterium Tuberculosis
 gi|90108540|pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
           From Mycobacterium Tuberculosis
 gi|90108541|pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
           Comlexed With Mg2+
 gi|90108542|pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
           Comlexed With Mg2+
          Length = 233

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 21  DDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLI 76
           + G+ L GF    +++  E L+S+      AI   +       + +   +RA  + VP+ 
Sbjct: 24  ERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 83

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIR 132
            +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+     GP+ 
Sbjct: 84  VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLE 143

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+ 
Sbjct: 144 VDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVDV 202

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I  LR+KL    G   + + R +G+ +
Sbjct: 203 FIGYLRRKLEAGGGPRLLHTVRGVGFVL 230


>gi|329766938|ref|ZP_08258466.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341]
 gi|328837663|gb|EGF87288.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341]
          Length = 238

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 92/231 (39%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++   +     +G  ++   +    + L+     D S +   +        
Sbjct: 5   ILIVDDEERIRKLLVMYLEKEGYIVD--EASNGHDGLERLKYMDYSCVLLDVQLPMLNGK 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R     P+I +S     Q+ ++ F+ G DD V KP   RE++ R+ AI +R K 
Sbjct: 63  SILSELRKTKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQRTKR 122

Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S          +      + +  +     V+     L  +E  +L +L  +  K   + +
Sbjct: 123 SVFYTPELYTKDVLVFPGLIIDVNSHKVIVEDSEVLLTPKEFDLLLFLAKSPDKAFKRNE 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221
           I  A++  +D   +   V++HI ++RKK           + +   +GY  D
Sbjct: 183 ILRAVWD-YDFYSDLRTVDTHIKRVRKKFDKISPKVAQMIVTVWGIGYKFD 232


>gi|311897138|dbj|BAJ29546.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 91/220 (41%), Gaps = 5/220 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +G +++  +  E   WL +    DV  ++  L         
Sbjct: 4   LVVEDERRLAATLQRGLRAEGFAVDLAHDGEEGLWLATEHDYDVIVLDIMLPR--LNGYR 61

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   +RA     P++ ++         +  D+G DD ++KP  +  ++AR+ A+ RR   
Sbjct: 62  VCSRLRAAGDDTPILMLTAKDGELDEAEALDTGADDFLSKPFSYVVLVARLRALVRRTGR 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
                 E G + +    R     G    L  RE  +LE L    G  V+K +I  +++  
Sbjct: 122 RLPQTLEFGDLAIDPARRTCTRAGVEVRLTTREFAVLECLARAAGGVVSKREILESVWDA 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                + N+VE HIS LR+K+        V + R  GY +
Sbjct: 182 A-FDGDPNIVEVHISALRRKIDAPFARTSVGTVRGAGYRL 220


>gi|302520395|ref|ZP_07272737.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429290|gb|EFL01106.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 256

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61
           +++DD   + +        +G  +                R D   ++  L    G  VL
Sbjct: 25  LVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGLSVL 84

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
            L R  R     P++ +++  +    +    +G D+ V+KP    E++AR+  + RR   
Sbjct: 85  HLMR--REQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAGA 142

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S +    G + +  D  +    G    L   E  +L YLM N  + ++K QI   ++
Sbjct: 143 GRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + NVVE +IS LR+K+ ++     + ++R  GY I
Sbjct: 203 -SYDFGGQANVVELYISYLRRKI-DRGREPMIHTRRGAGYLI 242


>gi|266624703|ref|ZP_06117638.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288863426|gb|EFC95724.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 244

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +  DD   +++    L   DG  + E  N +E  E  ++    D+  ++  + G     
Sbjct: 20  ILFADDDPEIREVVRILLARDGYEVVEAVNGIEAVE--KADHTIDLIILDVMMPGC--SG 75

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           +E    IR  S  P++ ++     +   + F +G DD + KP    E+ ARV A+ RR  
Sbjct: 76  VEACGEIRKKSSAPILFLTAKSRDRDKEEGFAAGGDDYLVKPFSSVELKARVNAMLRRYC 135

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                            + +F+D  +    GE   L   E RIL  L  NR K      I
Sbjct: 136 VYKGKKGTEREVISLPGLEIFADTEEVIKNGERVLLTDIEYRILLLLAENRKKTYTTQDI 195

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           + A++         N V  HI  LRKKL +       + +    GY ID
Sbjct: 196 YEAVWNEPFLFSSNNTVMVHIRNLRKKLEDDPQNPRCIRNVWGKGYRID 244


>gi|238026960|ref|YP_002911191.1| osmolarity response regulator [Burkholderia glumae BGR1]
 gi|237876154|gb|ACR28487.1| Hypothetical protein bglu_1g13360 [Burkholderia glumae BGR1]
          Length = 244

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 14/212 (6%)

Query: 20  GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGI 78
           G+ G ++    +      L    R D+  ++  L   GE  L + R +R ++ + P+I +
Sbjct: 30  GEQGFNVYVAENATAMNKLWVRERFDLLVLDLMLP--GEDGLSICRRLRGSNDRTPIIML 87

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---------NRAETG 129
           +        +   + G DD + KP + RE++AR+ A+ RR   +             E G
Sbjct: 88  TAKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFG 147

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
              +    R     G+  PL   E  +L+    +  + +++ ++     G  +  V +  
Sbjct: 148 EFSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGR-EYEVFDRS 206

Query: 190 VESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++  IS+LRK +  +      + +   LGY  
Sbjct: 207 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238


>gi|71277926|ref|YP_271244.1| osmolarity response regulator [Colwellia psychrerythraea 34H]
 gi|71143666|gb|AAZ24139.1| transcriptional regulatory protein OmpR [Colwellia psychrerythraea
           34H]
          Length = 240

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G ++    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLVEQGFTVRSAANSEQMDRLLERENFHLLVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R +S  +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQNSNNIPIVMLTAKGDEVDRIIGLELGADDYMPKPFNPRELLARIKAVLRRRT 125

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      N    G   +    R+ +      PL   E  +L+ L+ +  + +++ +
Sbjct: 126 QEAPGAPALEENVISFGGYHLNLATREMQKDDISMPLTSGEFAVLKALVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ L         + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEEDPAKPRYLQTVWGLGYVF 233


>gi|258511095|ref|YP_003184529.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477821|gb|ACV58140.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 233

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + D         G  +   ++              +  ++  L     +  
Sbjct: 7   ILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIPGE-- 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+   +RA S VP++ ++     +  L     G DD V KP +  E++ARV AI RR   
Sbjct: 65  EVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRTML 124

Query: 120 -KVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                +R E   G + + +  +     G    L   E ++L  L  +  +  ++ ++   
Sbjct: 125 DHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREELIER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++G+ D   +   +++H+  LR K+ +       + +   +GY  
Sbjct: 185 VFGM-DFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRF 228


>gi|148550486|ref|YP_001270588.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148514544|gb|ABQ81404.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 240

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   +++        +G  L           L      D+  ++  +   GE  L
Sbjct: 7   IAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMP--GEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR+ S  P++ +S        +   + G DD + KP + RE+LARV A+ RR   
Sbjct: 65  SLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRATP 124

Query: 122 SNN--------RAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           ++             G   +    R+     G    L   E R+L  L+   G+ V + +
Sbjct: 125 ASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVTRDE 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + + + G   E  +   +++ IS+LR+K+  +      + +    GY+ 
Sbjct: 185 LLNKVSGRASEPFD-RSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAF 232


>gi|332995705|gb|AEF05760.1| osmolarity response regulator [Alteromonas sp. SN2]
          Length = 240

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 92/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRSLLERYLVEQGYQVRSAGNAEQMDRLLERENFHLMVLDLMLP--GEDGL 65

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   +++P+I ++        +   + G DD + KP + RE+LAR  A+ RR  
Sbjct: 66  SICRRLRQMGNELPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRN 125

Query: 121 VSN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                         E G  ++    R+         L   E  +L+ L+ +  + +++ +
Sbjct: 126 SEAPGAPSKDVQVIEFGEYKLNLATREMTAGTTPLTLTSGEFAVLKSLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ L  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEKDPANPRYIQTVWGLGYVF 233


>gi|256389697|ref|YP_003111261.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256355923|gb|ACU69420.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 223

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+         DG  +              + R D   ++  +       L
Sbjct: 3   ILVVDDDPAVRRSLEHALRRDGYDVVSVADGTSALAEHVAFRPDAVVLDILMPEP--NGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A    P++ ++    +   +   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  EVCRALRSAGDDTPILMLTARDLVTDRVAGLDAGADDYLAKPFALEELRARLRALLRRSG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       +R+   G   E  G    L + E  +LE  + N    +++TQIF +++G 
Sbjct: 121 AQSEVLTFADVRLDLSGWRVERGGRRLELTKTELSLLELFLRNPQHVLSRTQIFESVWG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +D   + N +  +IS LR KL    G   + + R LGY +
Sbjct: 180 YDFGPQSNALWVYISYLRGKLEADGGARLIQTVRGLGYVL 219


>gi|254518869|ref|ZP_05130925.1| LOW QUALITY PROTEIN: response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912618|gb|EEH97819.1| LOW QUALITY PROTEIN: response regulator [Clostridium sp. 7_2_43FAA]
          Length = 194

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 35  EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94
           EE L++    D+  ++  L        E+ R ++     P+I +S   S+   ++    G
Sbjct: 11  EEALEN--EYDLVILDVMLPS--MNGFEICRRLKRGKNTPVIMLSAKDSVMDKVNGLQIG 66

Query: 95  VDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153
            DD + KP    E+LAR+  ++RR   ++++  +   I +    R  +   E   L  +E
Sbjct: 67  ADDYIPKPFAIEELLARIEVVFRRQDNLNDSIVKFKDILINRRSRIVKRNNEEINLTNKE 126

Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213
             +L  L+ N+ + V + ++   I+G +    E NV + +I  LR KL NK   + + + 
Sbjct: 127 YELLMILIDNKDRIVTREELLEKIWG-YGYEPETNVTDVYIRYLRSKLNNKNKEEYIQTI 185

Query: 214 RFLGYSI 220
           R +GY +
Sbjct: 186 RSVGYIM 192


>gi|119468399|ref|ZP_01611490.1| Transcriptional regulatory protein in two-component regulatory
           system with baeS [Alteromonadales bacterium TW-7]
 gi|119447907|gb|EAW29172.1| Transcriptional regulatory protein in two-component regulatory
           system with baeS [Alteromonadales bacterium TW-7]
          Length = 223

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +       +    + +  +  +   WL+   R  +  ++  L   G+  
Sbjct: 5   ILIVEDEEKLSNLMSDFLMNHHFNTHQIHHGNDVLPWLE-INRPSLILLDVMLP--GQSG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + IR  S VP+I +S        L   + G DD + KP  + E++ARV AI RRL 
Sbjct: 62  IELCKAIRRFSNVPIIMVSAKVEEIDRLLGLELGADDYICKPFSYAELVARVKAILRRLN 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           VS    +T  +++       + Q     L   E ++ + L  N  +  ++  +   +Y  
Sbjct: 122 VSA--VQTSVMQLDETTYKVKYQDNDIELTNFEFQLFKPLFNNPSRIYSRDSLMDTMY-T 178

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
               V    ++SHI KLRKKL      +  + S   +GY  
Sbjct: 179 DQRIVSHRTIDSHIKKLRKKLDELTKTESVIQSVYGVGYRF 219


>gi|297202817|ref|ZP_06920214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297148214|gb|EFH28896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 228

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   V     A+    G  +    S E          +    +   L    +   
Sbjct: 3   LLLVEDDNHVAAALSAVLARHGFDVTHARSGEEALQALVPESDGFGVVLLDLGLPDQDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR   
Sbjct: 63  EVCGKIRKRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRTAH 122

Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +           G +R+    R   V G V  L R+E  +L  L    G    + QI S
Sbjct: 123 EDAPGGGDTGLVLGAVRIELPTRQVTVDGTVVQLTRKEFDLLALLAQRPGVVFRREQIIS 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++    E      +E H++ LR KLR       +++ R +GY +
Sbjct: 183 EVWRTSWEGTG-RTLEVHVASLRAKLRMPA---LIETVRGVGYRL 223


>gi|119899236|ref|YP_934449.1| two component response regulator [Azoarcus sp. BH72]
 gi|119671649|emb|CAL95562.1| two component response regulator [Azoarcus sp. BH72]
          Length = 226

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            ++++D     D       + G  ++          L      D+  ++  L    G  V
Sbjct: 3   ILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALGGDYDLVVLDVMLPSLDGWGV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L+  R  RA  ++P++ ++    ++  +   + G DD + KP    E+LARV  + RR K
Sbjct: 63  LQTVR--RAGHEMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                      + +    R     G+   L  +E  +LE L+  +G+ + ++ I S ++ 
Sbjct: 121 AKEAEVLRAADLELDLLRRRVVRGGQRIDLTAKEFALLELLLRRQGEVLPRSLIASQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +   + NV+E  + +LR K+ +      + + R +GY ++
Sbjct: 181 M-NFDSDTNVIEVAVRRLRAKVDDSFEPKLIRTVRGMGYVLE 221


>gi|15642708|ref|NP_232341.1| osmolarity response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121586637|ref|ZP_01676422.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80]
 gi|153212533|ref|ZP_01948280.1| transcriptional regulator OmpR [Vibrio cholerae 1587]
 gi|153802199|ref|ZP_01956785.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3]
 gi|153817423|ref|ZP_01970090.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457]
 gi|153821289|ref|ZP_01973956.1| transcriptional regulator OmpR [Vibrio cholerae B33]
 gi|227082828|ref|YP_002811379.1| transcriptional regulator OmpR [Vibrio cholerae M66-2]
 gi|229507238|ref|ZP_04396743.1| two-component system response regulator OmpR [Vibrio cholerae BX
           330286]
 gi|229509841|ref|ZP_04399322.1| two-component system response regulator OmpR [Vibrio cholerae B33]
 gi|229516962|ref|ZP_04406408.1| two-component system response regulator OmpR [Vibrio cholerae RC9]
 gi|229527361|ref|ZP_04416753.1| two-component system response regulator OmpR [Vibrio cholerae
           12129(1)]
 gi|229606744|ref|YP_002877392.1| osmolarity response regulator [Vibrio cholerae MJ-1236]
 gi|254225437|ref|ZP_04919048.1| transcriptional regulator OmpR [Vibrio cholerae V51]
 gi|254285903|ref|ZP_04960865.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226]
 gi|254851251|ref|ZP_05240601.1| transcriptional regulator OmpR [Vibrio cholerae MO10]
 gi|255744328|ref|ZP_05418280.1| two-component system response regulator OmpR [Vibrio cholera CIRS
           101]
 gi|262158562|ref|ZP_06029677.1| two-component system response regulator OmpR [Vibrio cholerae INDRE
           91/1]
 gi|262190727|ref|ZP_06048957.1| two-component system response regulator OmpR [Vibrio cholerae CT
           5369-93]
 gi|9657311|gb|AAF95854.1| transcriptional regulator OmpR [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549196|gb|EAX59229.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80]
 gi|124116404|gb|EAY35224.1| transcriptional regulator OmpR [Vibrio cholerae 1587]
 gi|124122273|gb|EAY41016.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3]
 gi|125622071|gb|EAZ50394.1| transcriptional regulator OmpR [Vibrio cholerae V51]
 gi|126512009|gb|EAZ74603.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457]
 gi|126521221|gb|EAZ78444.1| transcriptional regulator OmpR [Vibrio cholerae B33]
 gi|150424085|gb|EDN16024.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226]
 gi|227010716|gb|ACP06928.1| transcriptional regulator OmpR [Vibrio cholerae M66-2]
 gi|229334993|gb|EEO00478.1| two-component system response regulator OmpR [Vibrio cholerae
           12129(1)]
 gi|229346025|gb|EEO10997.1| two-component system response regulator OmpR [Vibrio cholerae RC9]
 gi|229353315|gb|EEO18254.1| two-component system response regulator OmpR [Vibrio cholerae B33]
 gi|229354743|gb|EEO19664.1| two-component system response regulator OmpR [Vibrio cholerae BX
           330286]
 gi|229369399|gb|ACQ59822.1| two-component system response regulator OmpR [Vibrio cholerae
           MJ-1236]
 gi|254846956|gb|EET25370.1| transcriptional regulator OmpR [Vibrio cholerae MO10]
 gi|255737853|gb|EET93246.1| two-component system response regulator OmpR [Vibrio cholera CIRS
           101]
 gi|262029723|gb|EEY48372.1| two-component system response regulator OmpR [Vibrio cholerae INDRE
           91/1]
 gi|262033404|gb|EEY51912.1| two-component system response regulator OmpR [Vibrio cholerae CT
           5369-93]
 gi|327485184|gb|AEA79591.1| Two-component system response regulator OmpR [Vibrio cholerae
           LMA3894-4]
          Length = 240

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGLS 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R +R  +  +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|291301488|ref|YP_003512766.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290570708|gb|ADD43673.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 235

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D A V           G  +   ++        ++   DV  ++  L        +
Sbjct: 5   LLIEDDANVSAALTRALSKAGHHVRAESTALEALRKVTADPPDVVILDLGLPD--LDGAD 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             R++R  S VP+I  S        +   ++G DD V KP     +LAR+AA+ RR + S
Sbjct: 63  ALRMLRGVSNVPVIIASARRGETDIIKLLNAGADDYVTKPFSAAHLLARIAAVLRRHESS 122

Query: 123 NNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         GP+ V        + G    L RRE  +L YL  + G+ V+K ++   ++
Sbjct: 123 DTAKSVLITVGPLSVDQSRHVAALDGNELELTRREFSLLTYLARHAGRVVSKQELVEQVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
                   E  V+ H+S LR+KL         + + R +G  +
Sbjct: 183 RQP-YIGAEATVDVHVSWLRRKLGETAAKPRLLRTVRGVGIML 224


>gi|167757351|ref|ZP_02429478.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402]
 gi|237735574|ref|ZP_04566055.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|167703526|gb|EDS18105.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402]
 gi|229381319|gb|EEO31410.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 236

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 97/233 (41%), Gaps = 17/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++       + G ++   ++ E    L  +    ++ ++  +       +
Sbjct: 5   ILIVEDEKGIRETVTVFLKNQGYNVLQASNGEEGLALIEANEIHLAVVDIMMPV--MDGI 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   +R +   P+I +S        +   + G DD + KP    E++ARV +  RR   
Sbjct: 63  TMVLKLRENYDFPVIFLSAKSEDIDKITGLNIGGDDYITKPFEAMELIARVNSNLRRYNQ 122

Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       +  R   G + +    ++  V      L  +E +ILE LM+  G+  +
Sbjct: 123 ILALKENRNLNNNQQRLVVGGLELDKFTKEVFVNDRGVRLTAKEFQILELLMSYPGRVYS 182

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
             +I+ A++   +EA+    +  H+ KLR+K+  N    + +     +GY I+
Sbjct: 183 AEEIYEAVWK--EEAINTETIMVHVRKLREKIEANPKKPEYLKVVWGIGYKIE 233


>gi|223984338|ref|ZP_03634480.1| hypothetical protein HOLDEFILI_01774 [Holdemania filiformis DSM
           12042]
 gi|223963695|gb|EEF68065.1| hypothetical protein HOLDEFILI_01774 [Holdemania filiformis DSM
           12042]
          Length = 232

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L+DD+  +      +  DDG   L    ++E    +  + R D++ ++  L       
Sbjct: 11  ILLVDDQPELLTLVREILTDDGFCHLASAGTVEQGLAVCRTQRPDLAILDVMLPD--GDG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
             L + +R  S++P++ ++        L     G DD + KP   +E+L R+ A+ RR  
Sbjct: 69  FSLLKQLRQFSEMPVLFLTARDEADDKLAGLGLGADDYIVKPFLPQELLLRIHAVLRRCY 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K +  + +     V     +   Q +   L  +E  +LE L+ N G+ V    +  A++G
Sbjct: 129 KEAGEQIQLAACTVDFSRAEVYRQDQTLALTAKEHALLETLVRNEGRIVTFDALCEALWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +    EN + +H+ ++R+K+  +      + + + LGY +
Sbjct: 189 E-NPFGYENSLNAHVRRVREKIEADPSHPVSLITVKGLGYKL 229


>gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 233

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G       +   EE L  + RE    +   L+  G    
Sbjct: 6   ILIVDDERDIVELVRFNLKREGY--HTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDGF 63

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+ R IR ++   ++P++ ++        +   + G +D ++KP   RE++AR+  I RR
Sbjct: 64  EVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRR 123

Query: 119 LK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                   +      GP+ +        V      L   E ++L +L+  +G    + QI
Sbjct: 124 RTRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTRGQI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             A++G  + AV E  V+  I+ LRKKL      D +++ R +GY  
Sbjct: 184 VDAVHGE-NYAVTERSVDVTIAGLRKKLG--PCADFIETVRGVGYRF 227


>gi|77164853|ref|YP_343378.1| two comoponent transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|254433825|ref|ZP_05047333.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|76883167|gb|ABA57848.1| two compnent transcriptional regulator, winged helix family
           [Nitrosococcus oceani ATCC 19707]
 gi|207090158|gb|EDZ67429.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 219

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 105/222 (47%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  + LF   G +++                 D+  ++  L   G   L
Sbjct: 3   LLLVEDNVALADELLPLFKGYGYAVDWRVDGRDALLAVHDESYDMVVLDLGLP--GLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +  RA    +P++ ++   +    L+   +G DD ++KP H  E+L RV A+ RR  
Sbjct: 61  QVLQHWRAEGVTLPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSH 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V++ R E G + +  D +      + + L R E R+L   M + GK +++ ++   +Y
Sbjct: 121 GTVNSPRLEAGGLALDEDRQSVWQGDQEYELTRGEFRLLRCFMLHPGKVLSRMELSEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   + NV+E HIS+LR+KL    G   ++++R  GY  
Sbjct: 181 DG-ESERDSNVLEVHISRLRRKL----GDPVIETRRNQGYRF 217


>gi|306833975|ref|ZP_07467099.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304423976|gb|EFM27118.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 230

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 10/222 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           DD   +++   +   + G+ +E F + +           DV  ++  +   G   +E+  
Sbjct: 8   DDEKNIRELIASFLREQGLDVEIFETGDQLLLRFMEEEADVVILDVMMP--GTNGVEIVT 65

Query: 66  IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------- 118
           ++R  S VP+I ++   S    +  F +G DD   KP    ++  RV AI  R       
Sbjct: 66  MLRKRSDVPIILLTARDSDADFVKGFSAGADDYFTKPFSPLKLSLRVKAILARQPQSQEV 125

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +K +++      + +    R      +V  L   E  +L+ LM +  + V++ ++   I+
Sbjct: 126 VKGTSDVVTYEALTLSEKERTVTYDNQVLKLTNTEFELLKMLMNHAEEAVSRDELLHHIW 185

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++ ++E  V +  I +LR+KLR       +++    G+ +
Sbjct: 186 G-YESSIETRVTDDTIKRLRRKLRGVDSHVLIETVWGYGFKL 226


>gi|291461067|ref|ZP_06026728.2| DNA-binding response regulator ArlR [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379171|gb|EFE86689.1| DNA-binding response regulator ArlR [Fusobacterium periodonticum
           ATCC 33693]
          Length = 233

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++          G  +      E    L +    DV  ++  L  K     
Sbjct: 13  ILIIEDDKNIQRLLSLELKHKGYIVSSAYDGEEGLELFTKNSYDVVLLDLMLPKK--SGK 70

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL +  R  +  P+I  +   ++   ++  D G +D + KP    E+LAR+  + R  + 
Sbjct: 71  ELCQEFRKLTDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNRET 130

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S+++       I++    +   +  +   L + E  ILEY M NR    ++ +I + ++G
Sbjct: 131 SSDKQIYFENEIKLDLTTKKVFINQKEISLTKTEFLILEYFMKNRAISCSREKILTGVWG 190

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   EE +V+ +I+ LRKK+        + + R  GY   +
Sbjct: 191 -YDFDGEEKIVDVYINSLRKKMDT--ESKYIHTIRGFGYIFQY 230


>gi|241894797|ref|ZP_04782093.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241872009|gb|EER75760.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 271

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 106/236 (44%), Gaps = 22/236 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL----QSSAREDVSAIEAFLIGKG 57
            ++I+D   V +     +  +   +   N+ + EE L    +++   D   ++  L    
Sbjct: 32  LLMIEDNTSVSEMMGMFYKKEKWDVT--NAYDGEEGLKLFNENAQTWDAVILDLNLPKV- 88

Query: 58  EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
              +++   IR  S +VPLI ++   S    +  FD G DD V KP     ++AR+ AI+
Sbjct: 89  -DGMQVAMKIREVSAEVPLIMLTARDSDSDQVLGFDVGADDYVTKPFSPITLIARIKAIH 147

Query: 117 RRLKVS----------NNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRG 165
           RR  +           +   +T   ++ S  R+  +   + P L  +E  +L  L   + 
Sbjct: 148 RRAMMQPVSHEEGVIDDFDVQTRTFKLNSRTREAYLNDVLIPDLTPKEFDLLRVLSKKQR 207

Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++ Q+   ++  ++   +E  V++H+ KLR+K+  K+G   + +   +GY  D
Sbjct: 208 QVFSRDQLLQLVWD-YEYFGDERTVDAHVKKLRQKIE-KVGPQVIQTVWGVGYKFD 261


>gi|226226840|ref|YP_002760946.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090031|dbj|BAH38476.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 245

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 16/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D AL+  G  +    +G  +    +      L  S    +  ++  L        
Sbjct: 14  ILVVEDNALLAAGVRSNLEFEGYQVTVAATGREGLRLAKSRAHALIVLDLMLPD--IDGF 71

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R H  + P++ ++        +  F  G DD V KP    E LARV A+ RR +
Sbjct: 72  RVLRELREHGVETPVLILTAMGDETDKVRGFRFGADDYVTKPFGLMEFLARVQALLRRSR 131

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       ++N    G + +    R   ++G    L  RE  +L  L+   G   +
Sbjct: 132 TAKPAHDVPTVQADNTRRFGNVAIDLSTRSVTLEGSAVMLRPREYDLLVALVRRDGAIAS 191

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++   ++G  D  V    V++H+++LR+KL  +      + + R  GY +
Sbjct: 192 REELLREVWGYDDSVV-SRTVDTHMAELRRKLETDPSEPRWLLTVRKTGYRM 242


>gi|148378266|ref|YP_001252807.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932068|ref|YP_001382668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935185|ref|YP_001386219.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148287750|emb|CAL81816.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928112|gb|ABS33612.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931099|gb|ABS36598.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 225

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 95/224 (42%), Gaps = 6/224 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +       ++G ++    S       QS    D+  ++  L        
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKQSEFNPDLLILDLMLPD--ISGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR  S+VP+I ++   S  + L+ +  G DD + KP   ++++A+V A+ +R+K 
Sbjct: 63  NVCERIRRESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   N      + +    +  E   +   L   E +IL  L  N  K  ++ ++   I  
Sbjct: 123 NQRENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILAKNPNKIFSREELMDYI-S 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222
             +  + + ++++HI  +R KL         + + R +GY  + 
Sbjct: 182 RDNTCIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225


>gi|118616126|ref|YP_904458.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium ulcerans Agy99]
 gi|118568236|gb|ABL02987.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium ulcerans Agy99]
          Length = 236

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 21  DDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLI 76
           + G+ L GF    +++  E L+S+      AI   +       + +   +RA  + VP+ 
Sbjct: 27  ERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 86

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIR 132
            +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+     GP+ 
Sbjct: 87  VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSEIITVGPLE 146

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+ 
Sbjct: 147 VDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVDV 205

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I  LR+KL    G   + + R +G+ +
Sbjct: 206 FIGYLRRKLEANGGPRLLHTVRGVGFVL 233


>gi|88800114|ref|ZP_01115683.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
 gi|88777095|gb|EAR08301.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
          Length = 229

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +   +       G  +   +      EW++ +   D+  ++  L  K    
Sbjct: 5   ILVIEDEFQIAAIHRDYLNAAGYEVTCLDDGTQAVEWIRDNT-PDLILLDLMLPVK--DG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + + +R  S VP+I ++        L   + G DD + KP   RE++ARV A+ RR +
Sbjct: 62  HTICQEVRQFSNVPIIMVTAKVDEIDRLLGLEQGADDYICKPFSAREVVARVRAVLRRQE 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +        ++   D            L   E  +L+ L+++ GK  +++++ + IY  
Sbjct: 122 PTYYERAQSALQFNEDTLSVSTASTQIELTVVEFELLKALVSHPGKIFSRSRLAAIIYSD 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
               V E  ++SHI K+RKKL  +     + S    GY  + N
Sbjct: 182 H-RIVSERTIDSHIKKIRKKLAAEPINLTIQSVYGAGYKAEPN 223


>gi|293365004|ref|ZP_06611721.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|306829124|ref|ZP_07462314.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|307703252|ref|ZP_07640198.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291316454|gb|EFE56890.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|304428210|gb|EFM31300.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|307623327|gb|EFO02318.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 218

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G   E   + + EE L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGISDYLTDCGY--ETIQAADGEEALEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + GE   +  +E  IL+YL+ N G+ + ++QI  A++ + 
Sbjct: 121 TGRIFSYKNTKVDFESYSASLAGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKVT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLD----LDCILTVRNVGYKLE 216


>gi|302873565|ref|YP_003842198.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688255|ref|ZP_07630701.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576422|gb|ADL50434.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 91/234 (38%), Gaps = 23/234 (9%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGK 56
            ++++D   +     A    D + ++GF      + ++   +      D+  ++  L   
Sbjct: 4   ILIVEDDLTI-----AKLQRDYLEVKGFEVDIATDGVEGLDKIKNNSYDLVILDIMLP-- 56

Query: 57  GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
                 + + I+     P++ +S        +     G DD + KP    E++ARV A  
Sbjct: 57  KLHGYNVMKSIQDEKDFPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVEAHI 116

Query: 117 RRL---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167
           +           K  +N      ++V    R   + G+   L ++E  +L YL+ N  + 
Sbjct: 117 KNYERLKNKFGSKPQDNDIIIRGLQVKKPSRQVFINGKEVNLTQKEFDLLLYLVENPNRV 176

Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             + ++F  I+GL +   +   +  HI ++R K+  N      +++    GY  
Sbjct: 177 FGREELFERIWGL-EALGDNATITVHIGRIRDKIESNPSEPQYIETVWGAGYRF 229


>gi|229114181|ref|ZP_04243602.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669201|gb|EEL24622.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 223

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 81/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L    + D+  ++  +        
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIQQKKFDIILLDVMMPN--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYK 219


>gi|330817288|ref|YP_004360993.1| hypothetical protein bgla_1g24100 [Burkholderia gladioli BSR3]
 gi|327369681|gb|AEA61037.1| hypothetical protein bgla_1g24100 [Burkholderia gladioli BSR3]
          Length = 244

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 14/212 (6%)

Query: 20  GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGI 78
           G+ G ++    +      L    R D+  ++  L   GE  L + R +R ++ + P+I +
Sbjct: 30  GEQGFNVYVAENATAMNKLWVRERFDLLVLDLMLP--GEDGLSICRRLRGSNDRTPIIML 87

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---------NRAETG 129
           +        +   + G DD + KP + RE++AR+ A+ RR   +             E G
Sbjct: 88  TAKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFG 147

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
              +    R     G+  PL   E  +L+    +  + +++ ++     G  +  V +  
Sbjct: 148 EFSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGR-EYEVFDRS 206

Query: 190 VESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++  IS+LRK +  +      + +   LGY  
Sbjct: 207 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238


>gi|308188627|ref|YP_003932758.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1]
 gi|308059137|gb|ADO11309.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1]
          Length = 232

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G  +   +  E    L  ++  D+  ++  +  K    +
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLLDNS-IDLLLLDVMMPKK--NGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  DTLKELRQQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S  +          E   +R+    ++         L   E  +L  L  + G+ V++  
Sbjct: 121 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDDVTLDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   + G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPERRDGHPWFKTLRGRGY 226


>gi|170747205|ref|YP_001753465.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653727|gb|ACB22782.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 244

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 90/233 (38%), Gaps = 18/233 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60
             +++D   ++         +G      +     + L +S     +  ++  L   GE  
Sbjct: 7   IAIVEDDPDIRALLAGYLEGEGFRTVALDGGAALDRLLASGVAPHLVVLDWMLP--GEDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           L + R +R     P++ ++        +   + G DD V+KP + R +LAR+ A+ RR  
Sbjct: 65  LSICRRLRESGGPPIVMLTAKDEDIDRVLGLEMGADDYVSKPFNPRVLLARIRAVLRRAH 124

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGE---VFPLPRRERRILEYLMANRGKRVA 169
                  + ++ R     + V    R   + GE     PL   E  +L   +    + ++
Sbjct: 125 GAGVQAAEAASERLSVADLVVDLAARTV-LTGEPAAEVPLTSAEYDLLHCFVTRPQRVLS 183

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSI 220
           + Q+     G   +A +   ++  +S+LR KL          + + R  GY +
Sbjct: 184 RDQLLDWTRGRTADAFD-RTIDVQVSRLRHKLDASGSQAASLLKTVRNAGYIL 235


>gi|162450706|ref|YP_001613073.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161161288|emb|CAN92593.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 241

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +  G       +G  +      E    L  +   D+  I+  L        E
Sbjct: 20  LLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPR--LNGFE 77

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           L RI+R     +P+I +S   +    +   + G +D + KP    E+LARV A+ RR   
Sbjct: 78  LLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDAI 137

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    +   G I + +  R+      +  L   E  +L  L    G+ +++ QI + ++
Sbjct: 138 ARADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQIQAKVW 197

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G          +++ I +LR KL  N      + + R +GY  
Sbjct: 198 GPTHH-GTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRF 239


>gi|114562306|ref|YP_749819.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114333599|gb|ABI70981.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 219

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 10/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  L+  G +      G+ ++   S  + +   +   ED SAI   L        +
Sbjct: 4   LLVEDNKLLAQGIVMSLAKSGIQVDHLAS--YNQAQIALENEDFSAIILDLSLPDGNGAD 61

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L +  R +   +P+I ++      T L   D G DD ++KP   RE++AR+ AI RR   
Sbjct: 62  LLKQWRKNGISLPIIVLTANTDFDTRLMCLDIGADDYLSKPFDVRELIARLKAIIRRQHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + NN+   G + +     +   + E+  L RRE ++L     + G+ + + Q+    YG 
Sbjct: 122 LDNNQFSYGALNIDFARCEVHFRDELVSLSRREYQLLLEFAQSAGRVLTRNQLEQLTYGW 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + V  N +E HI  LRKK       + + + R +GY +
Sbjct: 182 --DEVGSNSIEVHIHHLRKK----TATELIKTVRGIGYIL 215


>gi|260891424|ref|ZP_05902687.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
 gi|260858807|gb|EEX73307.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
          Length = 200

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 92/201 (45%), Gaps = 5/201 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +        +G S++  + L+ EE L      +   +   ++       
Sbjct: 3   ILLAEDEVDLNNVVTRYLKKNGYSVD--SVLDGEEALDYLEYSEYDLVILDIMMPKVDGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ + +R   +   ++ ++   S    +   D G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  EVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELLARIRAVVRRKY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S+N+   G + + +  +     G+   L  +E  +LEYLM ++ + +++ QI   ++ 
Sbjct: 121 GNSSNKLVIGDLILDTSEKSVTRAGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKK 200
            FD   + N+++  I  +RKK
Sbjct: 181 -FDYEGDSNIIDVLIKNIRKK 200


>gi|327404313|ref|YP_004345151.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327319821|gb|AEA44313.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 223

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++        +G  +    + +    +    + D+  ++  +   G   +
Sbjct: 4   ILIVDDEEDIREILGYNLKKEGFKVFLAENGQTGISICKEEKPDLVILDVMMP--GMDGI 61

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           E+   IR       V +  ++      + +   D+G DD ++KPI  R +++RV A+ RR
Sbjct: 62  EVCDQIRNTKGLENVLICFLTARNEDYSQIAGLDAGADDYISKPIKPRVLISRVHALLRR 121

Query: 119 LKVSNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +    +   T  + +  +       GE   LP++E  +L  L +       +  I   +
Sbjct: 122 KESVQAKPTGTPDLVINREKYLVIKNGETLHLPKKEFELLSLLASRPEVVFERDLILERV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G  D  V +  ++ H+ KLR+K+    G D + + + +GY  
Sbjct: 182 WGT-DIIVGDRTIDVHVRKLREKI----GDDYIQTVKGIGYKF 219


>gi|254974555|ref|ZP_05271027.1| DNA-binding response regulator [Clostridium difficile QCD-66c26]
 gi|255091944|ref|ZP_05321422.1| DNA-binding response regulator [Clostridium difficile CIP 107932]
 gi|255313678|ref|ZP_05355261.1| DNA-binding response regulator [Clostridium difficile QCD-76w55]
 gi|255516362|ref|ZP_05384038.1| DNA-binding response regulator [Clostridium difficile QCD-97b34]
 gi|255649462|ref|ZP_05396364.1| DNA-binding response regulator [Clostridium difficile QCD-37x79]
 gi|255654981|ref|ZP_05400390.1| DNA-binding response regulator [Clostridium difficile QCD-23m63]
 gi|260682628|ref|YP_003213913.1| hypothetical protein CD196_0880 [Clostridium difficile CD196]
 gi|260686228|ref|YP_003217361.1| hypothetical protein CDR20291_0860 [Clostridium difficile R20291]
 gi|296449729|ref|ZP_06891499.1| response regulator [Clostridium difficile NAP08]
 gi|296877954|ref|ZP_06901973.1| response regulator [Clostridium difficile NAP07]
 gi|260208791|emb|CBA61677.1| putative uncharacterized protein [Clostridium difficile CD196]
 gi|260212244|emb|CBE02965.1| putative uncharacterized protein [Clostridium difficile R20291]
 gi|296261453|gb|EFH08278.1| response regulator [Clostridium difficile NAP08]
 gi|296431022|gb|EFH16850.1| response regulator [Clostridium difficile NAP07]
          Length = 227

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 90/225 (40%), Gaps = 7/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G        G S++   +++    +      D+  ++  L        
Sbjct: 4   ILLVEDDLSLIYGLEFSIQKSGFSIDIARTVKEAMQMYEEKNYDLLLLDVSLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R  S +P+I ++        +   D G DD + KP    E+++R+ A+ RR  V
Sbjct: 62  QICEKVREVSNIPIIFLTASDEEVNVVMGLDMGGDDYITKPFKLNELISRIKALLRRYNV 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++  N   +  I +               L   E ++L   M N+   + +  I   ++ 
Sbjct: 122 ASNVNELSSNNITIKLLENRVFKGEFEVELTTAEYKLLCLFMKNKNIVLTRKNILDKLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223
                +++N +  ++ +LR K+ +       + + R +GY   WN
Sbjct: 182 GNGSFIDDNTLSVYVRRLRNKIEDNPENPKFLLTVRRMGYK--WN 224


>gi|167747202|ref|ZP_02419329.1| hypothetical protein ANACAC_01916 [Anaerostipes caccae DSM 14662]
 gi|167654162|gb|EDR98291.1| hypothetical protein ANACAC_01916 [Anaerostipes caccae DSM 14662]
          Length = 226

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +           G    G         +      D+  ++  L  K     
Sbjct: 4   ILIIEDDKEILKILSDFLSGYGFEAVGKTDGRCICQIIRHQNIDLVLLDLMLPYK--SGD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + IR+ S +P+I IS   + Q  +D    G DD + KP    E LAR+ +  RR K+
Sbjct: 62  QLLKEIRSCSDLPVIVISARVTTQNKIDLLRLGADDYITKPFDLDETLARIESNLRRSKL 121

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   +   + + +      ++G    L  +E RILE LM    K  +K  +F +I+
Sbjct: 122 QTFQKKVLKFQELTLDTGSLTAYLKGVELSLTAKEFRILELLMRYPDKIFSKANLFQSIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           G  +   E+N +  HIS LR KL+      + +D+   +GY +
Sbjct: 182 G-SEYLSEDNTLNVHISHLRNKLKAVSSENEYIDTVWGIGYRL 223


>gi|126437395|ref|YP_001073086.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126237195|gb|ABO00596.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 233

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 9/208 (4%)

Query: 21  DDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLI 76
           + G+ L GF+   +++  E L+S+      AI   +       + +   +RA  + VP+ 
Sbjct: 24  ERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 83

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIR 132
            +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+   + GP+ 
Sbjct: 84  VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSSATFSSETIQVGPLE 143

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+ 
Sbjct: 144 VDIPGRRARVNGADVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVDV 202

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I  LR+KL        + + R +G+ +
Sbjct: 203 FIGYLRRKLEAGGAPRLLHTVRGVGFVL 230


>gi|253568488|ref|ZP_04845899.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|298385458|ref|ZP_06995016.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|251842561|gb|EES70641.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|298261599|gb|EFI04465.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 224

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   +         + G S+   +       +      D+  ++  +       L
Sbjct: 4   ILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMP--KINGL 61

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL  + R     Q P+I ++   + +  +   D+G DD + KP   +E+ AR+ A+ RR 
Sbjct: 62  ELCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRN 121

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           K +  N+     + +  + R  +       L  +E R+LEY M ++G  +++  +   ++
Sbjct: 122 KETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +     N+V+ +++ LR K+        + +   LGY ++
Sbjct: 182 DK-NFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 223


>gi|225573642|ref|ZP_03782397.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039010|gb|EEG49256.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
          Length = 233

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 11/228 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   ++                  + +      SS   D+  ++  L       
Sbjct: 5   LILVVEDDPSIRKLITTTLKAHEYRYLSAANGQSAILEASSHNPDIVLLDLGLPD--MDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E+ R IRA S +P+I IS        ++  D+G DD + KP    E+LAR+    RRL 
Sbjct: 63  VEIIRKIRAWSNMPIIVISARSEDSDKIEALDAGADDYLTKPFSVEELLARLRVTQRRLA 122

Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +  NR++        G +++        +      L   E ++L  L  N GK +  T I
Sbjct: 123 MMQNRSQVEESVFTNGSLKIDYVAGCVYLNENELHLTPIEYKLLCLLSQNIGKVLTHTYI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             AI+G   E  +   +   ++ LRKK+ +       + +   +GY +
Sbjct: 183 TQAIWGSSWEN-DIASLRVFMATLRKKIESAPDSPQYIQTHIGVGYRM 229


>gi|172065501|ref|YP_001816213.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997743|gb|ACB68660.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 221

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ DG  A     G  ++     +  +    +     + ++  L       +
Sbjct: 3   ILLVEDDVLLGDGIRAGLRQQGFQVDWVRDGDAAQRELRAHVHAATVLDLGLPLV--DGM 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR      P++ ++   ++   +   D+G DD V KP+   E+ AR+ A+ RR  
Sbjct: 61  DVLKRIRRDGTASPILVLTARDAVPDRIRALDAGADDYVIKPVDLYELGARLRALVRRSH 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                R     + +    R     G    L  RE  +L  LM N G+ +++ QI   +Y 
Sbjct: 121 GRPMERLHAQDVELEPASRTTRRAGVAVALSTREFDLLHILMLNAGRVLSREQIEQYLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + + VE N VE HI +LR KL    G + + + R +GY +
Sbjct: 180 SWGQEVESNAVEVHIHRLRAKL----GSELIRTVRGVGYVL 216


>gi|104782036|ref|YP_608534.1| response regulator [Pseudomonas entomophila L48]
 gi|95111023|emb|CAK15743.1| putative response regulator [Pseudomonas entomophila L48]
          Length = 233

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 99/231 (42%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + + +   +    +   +      +         + D+  ++  L   G   L
Sbjct: 4   ILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLDEFRRQKPDLVILDLMLP--GLDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R  +Q +P++ ++        +   + G DD V KP   R +LARV  + RR  
Sbjct: 62  QVCRLLRQETQCLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V+  R      + G +R+    R    +GE   L   E  +L  L  N G+ +++ +I  
Sbjct: 122 VNEPRLDSDLIQVGGLRIDLAERSVSWRGEEVELSSGEYNLLVVLARNAGEVMSRDRILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY---SIDW 222
            + G+ +    +  V+  ISKLR++  +  G    + +    GY    ++W
Sbjct: 182 QLRGI-EFNGTDRSVDVAISKLRRRFDDNAGEARKIKTVWGKGYLFSRVEW 231


>gi|255524900|ref|ZP_05391848.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511378|gb|EET87670.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 231

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +  D+   ++   S +           D+  ++  L       +
Sbjct: 6   ILIVDDDKDIVNLITDILEDELYQVDKAYSGQEAINKVEKESFDLIILDIMLPD--IDGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR      +I ++        +   + G DD + KP    E+ ARV A  R+ K 
Sbjct: 64  DVCRKIRDKFLGTIIFLTAKNRGVDKIVGLEIGADDYITKPFDDGELCARVKAHLRKQKR 123

Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  ++       I +  +  +  V  +   L  +E ++L Y++ N    + + QI+
Sbjct: 124 LNSLNLKNDETIRYKSIEINKNSFEVFVDRQRIILSTKEFQVLYYMIENHNIVLTREQIY 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++++G  D   + N V  HI KLR+K+        + +   +GY  
Sbjct: 184 NSVWGFGD-FGDINTVTVHIKKLREKI--PGCDRFIKTVWGIGYKF 226


>gi|284051075|ref|ZP_06381285.1| multi-component transcriptional regulator [Arthrospira platensis
           str. Paraca]
          Length = 587

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 24/231 (10%)

Query: 2   FVLIDDRA---------LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            +L+DD           L    Y+     DG S  G+N +E  E+        +  ++  
Sbjct: 3   ILLVDDDQYLNQQLSKSLKAHNYVVDIATDGES--GWNYIESFEY-------SLVILDIM 53

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L       + L R +R+H+ Q+P++ ++   S +  +   D+G DD + KPI   E++AR
Sbjct: 54  LP--KLNGIALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIAR 111

Query: 112 VAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ RR  +S         + +     +   Q  V PL  +E  ++E  + +  +  + 
Sbjct: 112 MRALLRRATISLPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSY 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I   ++ + + A + N V +HI  LR KL++  G    +++   +GY I
Sbjct: 172 DSIIEHLWSIEEPAAD-NTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRI 221



 Score = 65.3 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D   + +   AL    G+ ++  N+      +   +  D+  I+  +       +
Sbjct: 488 IIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPH--YNGI 545

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVN 100
           +L ++IR   +   +P++ ++++   +T  + F +G DD ++
Sbjct: 546 DLCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFIS 587



 Score = 39.9 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D   ++ +  I      G+       +     +    +  +  +E       E  L
Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
            L   I   H ++P++  S   S    L     G    + KP+ 
Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMS 467


>gi|229524692|ref|ZP_04414097.1| two-component system response regulator OmpR [Vibrio cholerae bv.
           albensis VL426]
 gi|229338273|gb|EEO03290.1| two-component system response regulator OmpR [Vibrio cholerae bv.
           albensis VL426]
          Length = 240

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 13/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L 
Sbjct: 8   LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLP--GEDGLS 65

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           + R +R  +  +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G  R+    R+     E  PL   E  +L+ L+ N  + +++ ++
Sbjct: 126 EAPGAPSSEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +   G  + +  E  ++  IS+LR+ L  +      + +   LGY  
Sbjct: 186 MNMARGR-EYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 232


>gi|206967861|ref|ZP_03228817.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229177114|ref|ZP_04304503.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188792|ref|ZP_04315827.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|206736781|gb|EDZ53928.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228594693|gb|EEK52477.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606295|gb|EEK63727.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 223

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++  +        
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIEQKEFDIILLDVMMPN--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPIEDYLETVYKVGYK 219


>gi|330827912|ref|YP_004390864.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328803048|gb|AEB48247.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D         G+ +      +  + L      D+  ++  +   GE  L
Sbjct: 8   ILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMP--GEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +R  S +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR + 
Sbjct: 66  TLCRELRVKSNLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRTQA 125

Query: 122 SNNRAE---TGPIRVFSDGRDPEV------QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
               A    T  +R      D          G    L   E  +L+  +    + +++ Q
Sbjct: 126 ETQPAAETLTRDLRFDRWLLDVNRRELVDEDGVGLSLSTAEFDLLKVFLERPQRVLSRDQ 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +     G    A +   +++ +S+LR+KL R+    + + +    GY  
Sbjct: 186 LLDLARGREAVAFD-RAIDTLVSRLRRKLERDPKNPELIKTIWGGGYMF 233


>gi|171059305|ref|YP_001791654.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170776750|gb|ACB34889.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 239

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 9/211 (4%)

Query: 12  KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71
            DG  A     G  ++        E   S+     + ++  L       L++ + +R   
Sbjct: 13  GDGLRAGLRALGFQVDWVRDGVAAERELSNQSYTAAVLDLGLPR--IDGLDVLQAVRRRG 70

Query: 72  -QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETG 129
            + P++ ++   ++   ++  D+G DD V KPI   E+ AR+ A+ RR      +     
Sbjct: 71  VKTPVLVLTARDAVPQRIETLDAGADDYVVKPIDLHELAARLRALVRRSHGQVQDLISVN 130

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
            + +    R+  + G+   L  RE  +L  LM   G+ + + Q+ + +YG + E V  N 
Sbjct: 131 GVDLDPGAREVRLDGDPIKLSTREFDLLHALMLRPGRVLTREQLENHLYG-WGEEVGSNT 189

Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           VE H+  LR+KL    G   + + R +GY+ 
Sbjct: 190 VEVHVHHLRRKL----GNQRIRTVRGVGYAF 216


>gi|149926314|ref|ZP_01914576.1| probable two-component response regulator transcription regulator
           protein [Limnobacter sp. MED105]
 gi|149825132|gb|EDM84344.1| probable two-component response regulator transcription regulator
           protein [Limnobacter sp. MED105]
          Length = 241

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 108/233 (46%), Gaps = 17/233 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNS----LEFEEWLQSSARED----VSAIEAFLI 54
           ++++D A V          +G   +  ++    L   + LQ   RE+    V  ++  L 
Sbjct: 4   LIVEDDARVSSFLERGLKAEGYRPQVAHNANTGLSMAKALQKEVRENFESAVVILDVMLP 63

Query: 55  GKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113
                 L++ + +RA    +P++ ++   S++  +     G DD + KP    EILAR+ 
Sbjct: 64  D--GSGLDVCQTLRAEGFALPVLMLTALNSVEDRVAGLRMGADDYLGKPFAFDEILARLE 121

Query: 114 AIYRRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           A+ RR+     K +    E   + +  +       G    L  +E  ++E LM+  G+  
Sbjct: 122 ALGRRVGNAAPKQARKNLEVADLNLDLEKMRLSRAGREIQLTAKELALVELLMSAPGRLF 181

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           ++ +I S ++G+ ++ +  NVV+ +I +LR K+  +     + ++R LGY ++
Sbjct: 182 SRERILSNVWGVNEDPL-TNVVDVYIRRLRTKIDLEGLQPLIHTQRGLGYRLE 233


>gi|300855161|ref|YP_003780145.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300435276|gb|ADK15043.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 217

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +             +   +   E+ L+    +    I   ++       
Sbjct: 4   ILVVEDELPISNLIKLNLNMSNYECK--TAFNGEDALEEIENDSFDLILLDVMLPKIDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   I+    +P+I ++   S+   +    +G DD + KP    E+LAR+  + R    
Sbjct: 62  TLLEKIKPLG-IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYNK 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           + N      + +          GE   L  +E  +L +L+ N+   + + ++   I+G +
Sbjct: 121 NTNVINFEDVEINLREMTARKAGEAVELTLKEFELLVFLVQNKNVVLTREKLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D   E   +++HI KLRKKL+ K   D + +   LGY ++
Sbjct: 180 DYVGETRTIDNHIQKLRKKLQWK---DKIKTVFKLGYRLE 216


>gi|153831657|ref|ZP_01984324.1| response regulator receiver domain protein [Vibrio harveyi HY01]
 gi|148872167|gb|EDL70984.1| response regulator receiver domain protein [Vibrio harveyi HY01]
          Length = 243

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 92/232 (39%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  +    ++   +        D+  ++  L       L
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHQVLRATNIAEAKAQYQQQSFDLLILDRGLPD--GDGL 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R      P++ ++        +D  ++GVDD + KP    E  ARV  + RR+ 
Sbjct: 70  DVCHYLRQKQDWNPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVS 129

Query: 121 VS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +           +  + GP+R+  +     +  +   L   E  +L++L    G+  +K
Sbjct: 130 HTTEVQTDKNVVEDAMDFGPLRIIPELHQVSLHDKDVTLTATEFTLLQFLATRPGRVYSK 189

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSI 220
            ++   ++   + +   + V S I++LR KL +  G D   + +   +GY  
Sbjct: 190 DELLDHVWNT-NHSGYHHTVCSTINRLRSKL-SLSGSDHHFIQTVWGVGYKF 239


>gi|222098142|ref|YP_002532199.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|221242200|gb|ACM14910.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 190

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 11/193 (5%)

Query: 38  LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97
           +      D+  ++  L        E+ + IRA   +P++ +S        +     G DD
Sbjct: 1   MALQEDYDLIILDIMLP--KMNGFEICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADD 58

Query: 98  VVNKPIHHREILARVAAIYRRLKV-------SNNRAETGPIRVFSDGRDPEVQGEVFPLP 150
            + KP    E++ARV A   R +          +      I +    R   +  E     
Sbjct: 59  YITKPFSPSELVARVKAHISRYERLLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFT 118

Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDP 209
            +E  +L + + N  + + K Q+F  I+GL D A +   V  HI KLR+K+ R+      
Sbjct: 119 TKEFDLLTFFVTNPNQVLNKEQLFERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQY 177

Query: 210 VDSKRFLGYSIDW 222
           +++    GY  + 
Sbjct: 178 IETVWGAGYRFNV 190


>gi|196228091|ref|ZP_03126958.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227494|gb|EDY21997.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 226

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD  +  D   A    +G +            L    R D+  ++  +        
Sbjct: 3   ILLADDDPITLDSLRACLEPEGFTALAARHGGEALALWEKHRPDLLCLDIMMPQV--DGY 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA  +QVP++ +S        +     G DD + KP    E+LAR+ A  RR+ 
Sbjct: 61  EVCRRVRAADAQVPVLFLSAKSEEIDVVVGLQLGADDFIRKPFGKHELLARIRAALRRVH 120

Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +N   +     + V+      E  G    L  RE  ILE L    G+ V +  + +  
Sbjct: 121 ARSNGVRSFAMHDLVVYPRELRAERAGATIDLSPREAGILELLHEKTGQVVDRDTLLNRC 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
           +G+ D   E   ++ HI+KLRK++    G    +++ R +GY 
Sbjct: 181 WGM-DYFPESRTLDQHIAKLRKRIEPDPGNPTIIETVRGVGYR 222


>gi|170724520|ref|YP_001758546.1| osmolarity response regulator [Shewanella woodyi ATCC 51908]
 gi|169809867|gb|ACA84451.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 241

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R + S +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQNGSPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 PDVPGAPTQQEEEITFGEFALNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ + R+      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIERDPANPRYIQTVWGLGYVF 233


>gi|186472759|ref|YP_001860101.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195091|gb|ACC73055.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 247

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 10/227 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +          +  + +             +    +  ++  L G+G   LE
Sbjct: 14  LIVEDEPKLSALLTDYLRAENFNTQVIEDGRKVIASVRANPPSLILLDLMLPGRG--GLE 71

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        L   + G DD V KP   RE++ARV AI RR+ + 
Sbjct: 72  ICRELRTFSDVPVIILTARVDEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRVDLL 131

Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              A  G       + +  +     + G+   L   E R+L  L +  G+  ++  +   
Sbjct: 132 PGAARAGVEPVASRLAIDVERHVASLDGKDLNLTPIETRLLALLNSTPGRIYSRDHLLRQ 191

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222
           +Y      V +  V+SH+  LR+KL+  +   D + S   +GY ++ 
Sbjct: 192 LYDDH-RVVADRTVDSHVKNLRRKLQTVRPDHDMIRSIYGVGYRLEV 237


>gi|325277746|ref|ZP_08143310.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097120|gb|EGB95402.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 233

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 100/231 (43%), Gaps = 13/231 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D + + +   +    +   ++     +         + D+  ++  L   G   L
Sbjct: 4   ILLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQKPDLVILDLMLP--GLDGL 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R++R  SQ +P++ ++        +   + G DD V+KP   R +LARV  + RR  
Sbjct: 62  QVCRLLRQESQGLPILMLTARDDSHDQVLGLEMGADDYVSKPCEPRVLLARVRTLLRRSS 121

Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           V+  R +      G +R+    R    +G+   L   E  +L  L  N G+ + + +I  
Sbjct: 122 VNEPRLDHDLIVIGGLRIDLAERTVSWRGDEVELSSGEYNLLVVLARNAGEVLNRDRILQ 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY---SIDW 222
            + G+ +    +  V+  ISKLR+K  +  G    + +    GY    ++W
Sbjct: 182 QLRGI-EFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEW 231


>gi|315178867|gb|ADT85781.1| transcriptional regulator CpxR [Vibrio furnissii NCTC 11218]
          Length = 228

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +      +   +G  +   N  E       +  + V  I   ++      +
Sbjct: 4   ILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAG---LHAVNDSVDLILLDVMMPKLNGM 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R   Q P + ++        +   + G DD + KP   RE+LAR+ AI RR   
Sbjct: 61  ETLKKLREKWQTPALMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTGN 120

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     E   ++++   ++   QG++  L   E  +L + + N G+ + K  +   
Sbjct: 121 HTQSKPTDMIECQDLQLYPGKQEAYCQGQLLDLTTTEFALLTHFVQNPGETLTKEMLSLD 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           + G    A +   ++ H+S LRKKL     G   + + R  GY
Sbjct: 181 VLGKRLAAFD-RAIDMHVSNLRKKLPERSDGKPRIKTLRGRGY 222


>gi|258621919|ref|ZP_05716949.1| DNA-binding response regulator [Vibrio mimicus VM573]
 gi|262171352|ref|ZP_06039030.1| two-component system response regulator QseB [Vibrio mimicus
           MB-451]
 gi|258585857|gb|EEW10576.1| DNA-binding response regulator [Vibrio mimicus VM573]
 gi|261892428|gb|EEY38414.1| two-component system response regulator QseB [Vibrio mimicus
           MB-451]
          Length = 219

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 98/221 (44%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  ++     G   E         +  ++   DV  ++  L       L
Sbjct: 3   ILVVEDDVQLGNQILSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLP--KLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       +G+   L   E +++ Y + N  K +++T++   IY 
Sbjct: 121 GNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFVHNPEKVISRTELVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D   + N +E  I ++RKK+      D + + R LGY +
Sbjct: 181 Q-DFDRDSNTIEVFIGRIRKKI----APDVIKTVRGLGYQL 216


>gi|256004617|ref|ZP_05429594.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|255991352|gb|EEU01457.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|316941289|gb|ADU75323.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 224

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +           + EG     FE+ L+  A+ +   +   +        
Sbjct: 4   ILIVEDDKALCNNIKEGISK--WNFEGIAVQNFEDILKEFAKHNPHLVIMDINLPYFDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              + IR  S VP+I +S   S    +   + G DD V KP     +LA++ A+ R+   
Sbjct: 62  YWCKKIRDISNVPVIFLSSRDSNMDIVMAVNMGGDDYVTKPFSMDVLLAKMQALIRKAYS 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +      E     + ++       G+   L + E +IL+ LM N+GK V++ +I   +
Sbjct: 122 YGQFDGQIIECNGAILNTNDGTLTYNGKNIELTKNEFKILQLLMRNKGKIVSRDKIMRVL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   +  + EN +  ++++LR KL +    D + +K+  GY I
Sbjct: 182 W-ESEYFISENTLTVNVNRLRSKLEDIGLKDLIVTKKSQGYMI 223


>gi|171910123|ref|ZP_02925593.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 242

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 93/230 (40%), Gaps = 13/230 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  ++DD   +++  +      G  +                + D+  ++  +   GE  
Sbjct: 9   LISVVDDHGEIRELVVRYLSQHGFRVTAAQDATDFRQQLEREKPDLVVLDIMMP--GEDG 66

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L L R +RA +Q+P+I ++        +   + G DD + KP + RE+LAR+ A+ RR+ 
Sbjct: 67  LALCRHLRAETQIPIIFLTAMAEDADRIVGLELGADDYLVKPFNPRELLARIRAVLRRVG 126

Query: 121 VSNN--------RAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       + + G   +     +     G   PL   E R+L   + + GK + + 
Sbjct: 127 TLPEIRSTHQAVQVKFGDKTLDVRRHEVTGPDGVAIPLSTAEFRLLCVFLDHPGKVLNRD 186

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            +     G  +  V +  +++ +S+LR+K+  +      + +    GY  
Sbjct: 187 ALLDLTSGR-EADVWDRSIDNQVSRLRRKIEPDSKNPTLIKTHWGDGYCF 235


>gi|148654376|ref|YP_001274581.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566486|gb|ABQ88631.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 243

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 97/226 (42%), Gaps = 9/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   + +        +G  +   ++             DV  ++  +       
Sbjct: 8   LILVVDDEPRMVNFMRMNLELEGCRVISASNGREALEKVRDEMPDVVLLDIMMPV--MDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R +R  S VP++ ++     +  +   + G DD + KP  HRE+++R+ A+ RR  
Sbjct: 66  FETLRRLRQASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRHY 125

Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +T       +++    R+  V GE   L   E R+L +L+ N G  +   Q+ S
Sbjct: 126 TPPPAPQTLVKVDDRLQIDFARREVLVNGERVNLRPTEYRLLYHLVQNAGYVMTHEQLLS 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++G  +   E + +  +++ LR+K+  +      + ++R +GY  
Sbjct: 186 KVWGP-EYRDETHYLRLYVTYLRQKIEEDPANPKYILTERGIGYRF 230


>gi|160880258|ref|YP_001559226.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428924|gb|ABX42487.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 231

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +   +        +  F +    +  +   +E++S I   L+       
Sbjct: 6   ILVVDDEPKILEVVASFLESQDYQV--FQAENGAKAFEIFEKENISLIILDLMLPDITGE 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + IR  S+VP+I ++        L+  + G DD + KP   +E+LARV A+ RR   
Sbjct: 64  EICKKIRKTSRVPIIMLTAKVEENNLLEGLEIGADDYITKPFRLKELLARVKAVLRRTSE 123

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +    +   + +               L   E  IL  L+   GK   + ++  
Sbjct: 124 ELVPLFNKISFDNDNLIIDFGKDLVLKNQSPVNLTPTEFNILSALIKYPGKVFTREELIE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              G  +    +  V+SHI  LR+K+ +       V +    GY  
Sbjct: 184 FALG-SEFEGFDRAVDSHIKNLRQKIEDNPRTPKYVLTIHGKGYKF 228


>gi|110632641|ref|YP_672849.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110283625|gb|ABG61684.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 223

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 128/221 (57%), Positives = 166/221 (75%), Gaps = 1/221 (0%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           M V++D+R LV  G+ +LF  +GV+  GF   EF +W++S+  ED+S++ AFL+G+    
Sbjct: 1   MIVVVDERELVTKGFTSLFNREGVATAGFRPSEFNDWVESAPDEDLSSVSAFLLGRCRTP 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
               R IR  ++ PLI +++  SL+ TL  F+ GVDDVV KP+H  EILAR++AI RR K
Sbjct: 61  ETPARRIRDRTRAPLIALAEQHSLEDTLRLFECGVDDVVRKPVHVLEILARISAISRRAK 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             + R+ E G +R+FSDGRDPE+ GE FPLPRRERRILEYL +N  +RV KTQIF+AIYG
Sbjct: 121 QQDQRSTEIGRLRIFSDGRDPEIDGEPFPLPRRERRILEYLASNSSRRVTKTQIFNAIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +FDE VEENVVESHISKLRKKLR KLGFDP+DSKR+LGY +
Sbjct: 181 IFDEEVEENVVESHISKLRKKLRVKLGFDPIDSKRYLGYQL 221


>gi|331000973|ref|ZP_08324610.1| transcriptional regulatory protein OmpR [Parasutterella
           excrementihominis YIT 11859]
 gi|329569932|gb|EGG51689.1| transcriptional regulatory protein OmpR [Parasutterella
           excrementihominis YIT 11859]
          Length = 260

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + ++D       ++G  +    + E    L    R D   ++  +   GE  +
Sbjct: 22  ILVVDDDSRLRDLLRQFLTNNGFHVSVAENAEQMNRLWLRERFDAVVLDVMMP--GEDGI 79

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IRA +   P++ ++        +   + G DD + KP + RE+LAR+ AI RR +
Sbjct: 80  SILKRIRASNDTTPILMLTAKGEDIDRILGLELGADDYLPKPYNPRELLARLHAILRRRE 139

Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      +     G   +    R      E  PL   E  +L+    +    +++ 
Sbjct: 140 PVDPPGAPSKEDEVVRFGNFSLDLGTRKLSKGDEEIPLTTGEFAVLKTFARHPRVPLSRD 199

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++     G   EA +   ++  +S+LRK +  +      + +   LGY  
Sbjct: 200 KLMEMARGREYEAFD-RSLDVQVSRLRKIIEPDPSKPRYLQTVWGLGYVF 248


>gi|317402892|gb|EFV83434.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 229

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG       +G +++        +   ++   D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAAQAFDLLILDLGLPQ--LAGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G +     GR   V  +   L  RE  +LE L+   G+ V+KTQ+   +  
Sbjct: 121 GGGATLLKHGRLVFDQTGRVATVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKKL        + + R LGY ++
Sbjct: 180 EWGEEVSTNAIEVYVHRLRKKLEPSGVK--IVTVRGLGYCLE 219


>gi|290958330|ref|YP_003489512.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260647856|emb|CBG70961.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 246

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 87/241 (36%), Gaps = 26/241 (10%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   ++         +G  +                R DV  ++  +   G   L+
Sbjct: 6   LLAEDDRAIRHALERALTLEGYEVTAVADGVEALAQAHRTRPDVLVLDVMMP--GIDGLQ 63

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R++RA     P++ ++        +   D+G DD V KP    E+ AR+ A+ RR   
Sbjct: 64  VCRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTGN 123

Query: 122 SN----------------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159
           ++                             +R+    R          L R E  +LE 
Sbjct: 124 ADGFARPLPPPAGAATATGAPETGGLLTAAGLRMDVQARRAWRGTRELELTRTEFDLLEL 183

Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           L+ N G  +    I+  I+G +D       +  ++  LR+KL        + + R +GY+
Sbjct: 184 LVRNAGIVLDHATIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDEPGAPALIHTVRGVGYA 242

Query: 220 I 220
           +
Sbjct: 243 L 243


>gi|300023992|ref|YP_003756603.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525813|gb|ADJ24282.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 232

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LI+D +        +   +G ++  + +   EE +      D   I   L        E
Sbjct: 4   LLIEDDSATAQSIELMLQSEGFNV--YTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGYE 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + + +R +    P++ +S    +   +     G DD + KP H  E++AR+ AI RR K 
Sbjct: 62  VLKTLRVSKVSTPILILSGLAGIDDKVRGLGFGADDYMTKPFHKDELVARIQAIVRRSKG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +  ETG +RV  D +  +V G+   L  +E ++LE L   +G  + K    + +YG 
Sbjct: 122 HAQSIIETGDLRVNLDTKTVDVNGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGG 181

Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
            DE  E  +++  I KLRKKL+    G   +++    GY +
Sbjct: 182 MDE-PELKIIDVFICKLRKKLQTATGGKHYIETVWGRGYVL 221


>gi|228937822|ref|ZP_04100452.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228951077|ref|ZP_04113195.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228970703|ref|ZP_04131345.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977280|ref|ZP_04137676.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|229068272|ref|ZP_04201575.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077897|ref|ZP_04210508.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229148925|ref|ZP_04277170.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634465|gb|EEK91049.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228705415|gb|EEL57790.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714733|gb|EEL66605.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228782419|gb|EEM30601.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228789005|gb|EEM36942.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228808594|gb|EEM55095.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228821857|gb|EEM67855.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938303|gb|AEA14199.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++  +        
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVMMPN--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPIEDYLETVYKVGYK 219


>gi|226228285|ref|YP_002762391.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091476|dbj|BAH39921.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 231

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   ++D       +    ++     E    +      D   ++  +   G   +
Sbjct: 3   LLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMP--GMDGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +RA    VP++ ++   ++   +   D+G DD + KP H  E+ ARV A+ RR+ 
Sbjct: 61  AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           V   +    G + + +  +     G + PL  RE  +L YL  + G+ V++ ++   ++ 
Sbjct: 121 VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
             +     N+++ ++S+LR+K+        + ++R  G
Sbjct: 181 E-NHDPNANLIDVYVSRLRRKVDGAGRRPLLHTRRGQG 217


>gi|116696122|ref|YP_841698.1| response regulator [Ralstonia eutropha H16]
 gi|113530621|emb|CAJ96968.1| response regulator of copper response,OmpR-family [Ralstonia
           eutropha H16]
          Length = 231

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D +   +       + G  ++   +    + L  +   D+  ++  L        
Sbjct: 3   LLVVEDESKTGEYLRQGLTEAGFVVDLVANGLDGQHLAMTEPYDLVILDVMLPDV--DGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + +RA    VP++ ++   S+   +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  RIVQALRAAEIAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +++ +R +   + +    R     G    L  +E  +LE L   RG+ + ++ I S ++
Sbjct: 121 AQMALDRIQVADLVLDLGRRRATRAGRRITLTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + +   + NV++  I +LR K+ ++     + + R +GY +
Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDEFEPKLIQTVRGMGYVL 221


>gi|312890843|ref|ZP_07750372.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296626|gb|EFQ73766.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 227

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +           G + +  +  +  + ++++   D   +   L+       
Sbjct: 3   ILLVEDEAKLAGFIADALNQAGHNCDHLD--DGTKGMEAAMVNDYDLLLLDLMLPSMNGF 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + +R+ +   P+I +S     +  +   D G  D + KP    E+LARV A+ RR  
Sbjct: 61  EVIKALRSFNNETPVIILSALNDTENVIKGLDLGAIDYLKKPFDLEELLARVRAVLRRSL 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              + + +   ++V    R+         L  RE  +LEYL++N  K V K+QI   ++ 
Sbjct: 121 AQGSLKLQVEDLKVDLLSREVSRNNVNIILSNREFALLEYLLSNPNKVVTKSQILEKVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + +     NVVE H+ +LRKK+      + + +    GY +
Sbjct: 181 I-NFDPGSNVVEVHLYQLRKKMDRGFAVELIHTVIGRGYVL 220


>gi|298246790|ref|ZP_06970595.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549449|gb|EFH83315.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 236

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 17/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +              +      +    + +  R D+  ++  L       L
Sbjct: 4   ILLVEDAPELARAIKQELEAQDYWVFHVGDGKSALSMHNKERPDLVILDWMLPE--LDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R +R  +  P++ ++        +   + G DD + KP   RE+LARV A+ RR + 
Sbjct: 62  EVLRRMRQVAPTPVLMLTARSEEIDRVIGLEVGADDYLTKPFSMRELLARVRAMLRRTEL 121

Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
                       +        + +  +     ++G    L   E  +L  L+ N G+   
Sbjct: 122 LEQMLRADRTLAAAQVLVYEGLSLNLEIHQAMLEGVELDLSPNEFALLHLLLRNPGRAFH 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  +   ++   +  V E  V++ + +LR+KL      D +++   +GY 
Sbjct: 182 RPYLLDLVW-QSEANVTERAVDTTVKRLRQKLGMLG--DCIETVWGIGYR 228


>gi|295107805|emb|CBL21758.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 230

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   + +        +G  +    + + E+ +++     V  +   ++      +
Sbjct: 4   ILVCDDDRDIVEAIEIYLTQEGHHI--LKAYDGEQAIRALQSNPVDLLIIDVMMPKLDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR  + +P+I +S        +   + G DD V KP +  E++ARV +  RR   
Sbjct: 62  RATLKIREKNALPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQ 121

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +   N  ETG + +  D ++  V GEV  L   E RIL  L+ N+G+  +  QI+
Sbjct: 122 LGAAAEKRGNIYETGGLMIDDDRKEVTVDGEVVKLTPIEYRILLLLVKNQGRVFSINQIY 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +I+   +    +N V  HI  +R+K+  N      +     LGY ++
Sbjct: 182 ESIW-EEEAIAADNTVAVHIRHIREKIEINPKEPRYLKVVWGLGYKVE 228


>gi|315498979|ref|YP_004087783.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315416991|gb|ADU13632.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 224

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           ++++D             + G      +  E           DV  ++  + G  G  +L
Sbjct: 5   LIVEDDVEAALTMQKGLSEQGFESVVTHDGEAGLKALREGEFDVVVLDRMMPGLDGVSML 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           E+ R       VP++ +S    L+  +    +G DD + KP    E++AR+ A+ RR   
Sbjct: 65  EIARS--EGMDVPVLFLSALGELEDRVYGLKAGADDYLVKPYALVELVARLEALLRRKDT 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                    G + +    R  +       L  RE ++LE+LM + G+ V +T +   ++ 
Sbjct: 123 GAVETTLRVGDLEMNLISRVVKRGNSEIDLQPREFQLLEFLMRHVGQSVTRTMLLEKVW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    + NV++ HIS+LR KL        + + R  GY +
Sbjct: 182 AYHFDPQTNVIDVHISRLRAKLDKGFDRAMLHTVRGEGYQL 222


>gi|71279007|ref|YP_269498.1| response regulator [Colwellia psychrerythraea 34H]
 gi|71144747|gb|AAZ25220.1| response regulator [Colwellia psychrerythraea 34H]
          Length = 243

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 31/244 (12%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +        +G  ++  +  +      +    D+  ++  L       L
Sbjct: 3   ILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPSHDMVILDLGLPD--IDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IRA    +P+I ++   S+ + +   D G DD + KP   +E+LAR+  I RRL 
Sbjct: 61  LVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQELLARLRVIERRLG 120

Query: 121 -VSNNRAETGPIRVFSDGRDPE------VQGE----------------VFPLPRRERRIL 157
             S++      + + +            V  E                     ++E  +L
Sbjct: 121 TASSSMITIDRVSLDTKSHKVYLLQCNQVNNEQNHEQEGEINAQNGASEVHFSKKEFMVL 180

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           + LM N G+  ++ QI S +Y  + E V  N VE HI KLRK L NK     + + R +G
Sbjct: 181 KALMENAGRIQSREQIESKLY-QWGEEVLSNAVEVHIHKLRKNLPNKF----IQNVRGVG 235

Query: 218 YSID 221
           Y I+
Sbjct: 236 YIIN 239


>gi|226311027|ref|YP_002770921.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093975|dbj|BAH42417.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 232

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 11/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKVL 61
           +++DD   +      +   +G+      S   E + Q      DV  ++  L     +  
Sbjct: 5   LIVDDEEDIVRLLKTVLIKEGIENVYTASTAAEGFGQFQDKHPDVVILDIMLPD--GEGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ + IR+ S VP++ +S        L     G DD + KP   +E+  RV A  RR + 
Sbjct: 63  DVCKKIRSISHVPILFLSAKTEEVDKLVGLAIGGDDYIGKPFSPKEVAYRVKAQLRRAEY 122

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 ++   + GP     +  +    G +  L  +E  +  +L+ +  + ++K +++ 
Sbjct: 123 QQVQVKADPIIQVGPFVFDEEKVELRKHGTIIELKPKELGLFTHLLKHPNQIISKEKLYY 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            ++G  D    +N V  HI KLR+K+ +       + + + LGY +
Sbjct: 183 QVWGE-DFFGFDNTVMVHIRKLREKIEDDPSNPTYLLTVKGLGYKL 227


>gi|172039329|ref|YP_001805830.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700783|gb|ACB53764.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 248

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F  +   +E     +    L      D++ ++  L    E   
Sbjct: 21  ILIVDDDPAICQLISRFFSYNNYYIESAVDAKTARQLFQKFNPDLAILDVNLPD--ESGF 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            L + IR    + ++ ++        L+ F+ G DD + KP +   + A++AA+ +R   
Sbjct: 79  NLCKEIRQTGTL-VLMLTCMTDTSHVLEGFEQGADDYLTKPFNLEILKAKIAALLKRRNG 137

Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
               L   NN      + +  +  +  +  EV PL   E  +L +L  +  +   ++ + 
Sbjct: 138 GEVNLNTPNNSVSIEGLTIDPNRCEVSLNHEVLPLTSLEFELLYFLATHPNRVWERSDLI 197

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +A++G   E   E  V+ HI ++RKK+ +  G   + + R  GY  +
Sbjct: 198 AAVWGNHHEIGAERKVDVHIGQIRKKINDIQGK-LIKTVRGKGYLFE 243


>gi|325262900|ref|ZP_08129636.1| DNA-binding response regulator RegX3 [Clostridium sp. D5]
 gi|324031994|gb|EGB93273.1| DNA-binding response regulator RegX3 [Clostridium sp. D5]
          Length = 221

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G  +     G    G  S+   + L     + +  ++  L        
Sbjct: 4   ILLVEDDETILFGIESALKRKGYVCTGCASVRQAKELFPGGFQ-LVLLDLNLPD--GSGY 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  R ++  +  P+I ++    ++      D G DD + KP H   + +R+AA+ RR   
Sbjct: 61  DFCRWVKERADTPVIFLTVRDDVRDITRGLDMGADDYITKPFHVAVLESRIAAVLRRTPA 120

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N    G IR+  +     +  +       E R+LE LM N+G+ + +  I   ++  
Sbjct: 121 EGGNVLICGNIRLNKEKIQVMLDDKPVDTTALEYRLLEVLMENKGRTLPRNLILDKLWDA 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
               V +N +   + +LRKKL +    + + + R +GY ++ N
Sbjct: 181 EGNFVNDNTLTVTVKRLRKKLMD---TEYIVTIRGIGYRMEEN 220


>gi|325104344|ref|YP_004273998.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
 gi|324973192|gb|ADY52176.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
          Length = 225

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 103/226 (45%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         ++ +  E        E +    + D   ++  L   G+  L
Sbjct: 3   ILIIEDDPTLSKNICDALSENDIHTETVYDGILAEKMLRKNQYDCIILDVNLP--GKTGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           +L +  R +++  P+I ++ +  L   +  F++G DD + KP + RE+  RV ++ +R  
Sbjct: 61  DLCKDFRQYNKYTPIIMLTAFGELDDKVAGFNAGADDYLTKPFYMRELSLRVNSLLKRST 120

Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                +  +  + G + + +  +    QG+   L  RE +IL  L++ RG+ V+K  +  
Sbjct: 121 TLGTNIEQDTIKIGDLIIDTKIKKVNRQGKDIILTPREFQILLKLVSCRGELVSKNDLIK 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            I+G     V  N +E  I+ LRKK+    G + + +K   GY  +
Sbjct: 181 EIWGNS-VDVNTNTIEVFINFLRKKIDKPFGQESIKTKVGYGYYFE 225


>gi|296284429|ref|ZP_06862427.1| two-component response regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 264

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 19/233 (8%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L+DD   +          +G     ++  E      +    D++  +  +       +EL
Sbjct: 32  LVDDDRNILTTVSIALQAEGFETRVYSDGETALRALTDNPPDLAVFDIKMPR--MDGMEL 89

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
              +R  S +P+I ++     +     F  G DD ++KP   R ++AR+ AI RR  + +
Sbjct: 90  LAKLRERSALPVIFLTSKDDERDEEAGFQMGADDYISKPFSLRLLVARIRAILRRSGLED 149

Query: 124 NRAE---------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
              E                G + +          G+   L   E  +LE L    G   
Sbjct: 150 AAPEGSADSRLSEARASFTRGRLTMDPARHQVTWDGKPVSLTVTEFLLLEALAHRPGVIK 209

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           ++ Q+  A Y   D  V++  V+SHI ++R+K R     F  +++    GYS 
Sbjct: 210 SRNQLMDAAY-PDDVFVDDRTVDSHIKRMRRKFRQVDSSFGAIETLYGAGYSF 261


>gi|332654449|ref|ZP_08420192.1| DNA-binding response regulator ResD [Ruminococcaceae bacterium D16]
 gi|332516413|gb|EGJ46019.1| DNA-binding response regulator ResD [Ruminococcaceae bacterium D16]
          Length = 224

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D    V+         +G  +           +      D+  +   L        
Sbjct: 4   ILIVDSDMAVRGQIGRHARLEGYEVAEAGDGYTAVSMCRQNAFDIIILAILLPE--MDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR+ SQVP++ +++  S Q  +   + G DD + KP   RE++ R++AI +R K 
Sbjct: 62  SVCQTIRSFSQVPILMLTERTSEQDRIHGLELGADDYMTKPFSPRELMLRISAILKRGKS 121

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            ++      E   I +    R   V G +  L  +E  +L  L ++     ++ ++   +
Sbjct: 122 MDSLEPQSIERDGIYIDLTARRVLVDGTLVSLTPKEFDLLTLLASHPDVVFSRKKLLDTV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G  +   +   +++HI ++R  +      D + + R +GY  +
Sbjct: 182 WGG-ELPEDTRTLDTHIKQVRHAISPY--SDRIVTLRGVGYRFE 222


>gi|58583964|ref|YP_202980.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|188574706|ref|YP_001911635.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58428558|gb|AAW77595.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|188519158|gb|ACD57103.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 247

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   +     A     G S +             + + D+  ++  L  +    LE
Sbjct: 23  LIVEDEPRLAAVVGAYLHAGGHSHDWIADGAQALGAFRAKKPDLVLLDLMLPNR--DGLE 80

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S VP+I ++        L   + G DD + KP   RE+ ARV A+  R +  
Sbjct: 81  ICRDLRKESAVPVIMVTARVEEIDRLRGVEIGADDYICKPFSPREVAARVQAVLPRHRHD 140

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
              A    + +  D     V G    L +   R+L  L A  G+  ++      +     
Sbjct: 141 PYGAPAPGLHIDEDACRASVDGRALDLTQVAFRLLRTLAAAPGRVCSREHRMGRL-SADH 199

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +V +  V+SH+  LR+KL +  G D V S    GY ++
Sbjct: 200 RSVTDRTVDSHVKNLRRKLAD--GEDWVRSVSGAGYRVE 236


>gi|15890951|ref|NP_356623.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15159265|gb|AAK89408.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 217

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 102/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D  ++ +         G +++ F +L        +    +  ++  L     + + 
Sbjct: 4   LLVEDDYVLGEALRDHVAAAGHAVDWFKTLGDAMAATLTMGYGLILLDMRLPD--GEGIT 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           L + +R      P+I ++ +  +   +   ++G DD V KP    E+ AR+ A+ RR + 
Sbjct: 62  LLQSLRKRDDATPVIILTAHDQVSDRIAGLNAGADDYVVKPFDLNELSARMLAVSRRYEG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S        I +    R+  V G    L  RE  +LE L+ + G  V+K Q+   +Y  
Sbjct: 122 RSAPVIRLPGIEINQVARNITVDGTAQTLSAREWAVLEKLVEHPGAVVSKAQLHDTLY-E 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F   +E N VE +IS+LRKK+    G D V++ R +GY+I
Sbjct: 181 FGAEIESNTVEVYISRLRKKI----GHDRVETVRGVGYTI 216


>gi|121586615|ref|ZP_01676400.1| transcriptional regulator CpxR [Vibrio cholerae 2740-80]
 gi|121549174|gb|EAX59207.1| transcriptional regulator CpxR [Vibrio cholerae 2740-80]
          Length = 223

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 10/220 (4%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64
           IDD   +      +   +G  +   N  E      S    D+  ++  +       +E  
Sbjct: 2   IDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSD-EIDLILLDVMMP--KLNGMETL 58

Query: 65  RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120
           + +R     P++ ++        +   + G DD + KP   RE+LAR+ AI RR +    
Sbjct: 59  KRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNGLT 118

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++  E   I+V+   ++   QG++  L   E  +L + + + G  + K  +   + G
Sbjct: 119 PKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIEVLG 178

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
               A +   ++ H+S LRKKL     G   + + R  GY
Sbjct: 179 KHLAAFD-RAIDMHVSNLRKKLPERPDGKARIKTLRGRGY 217


>gi|90416240|ref|ZP_01224172.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [marine gamma proteobacterium HTCC2207]
 gi|90331965|gb|EAS47179.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [marine gamma proteobacterium HTCC2207]
          Length = 219

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +             ++    +      +  + + D++ ++  L       +
Sbjct: 3   ILLVEDDTSLAAALCKALRQKNYAVNTVATGREALHVIRTEKPDMTILDLGLPD--MDGI 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ +  R +  ++ ++ ++     +  +   DSG DD + KP    E+LAR+  + RRL 
Sbjct: 61  EVLKKARHSQPEIQILILTARSGTEEKITGLDSGADDYLAKPFEVDELLARLRVLERRLG 120

Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +       G + + +      + G+   L RRE  +L  LM N G+   ++ + + +Y 
Sbjct: 121 SAKTSLVAVGDVVLDTTTNMVSMSGQNVELSRREYSLLRSLMENVGRVQTRSVLENRLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E HI  LRKKL    G D + + R +GY ++
Sbjct: 180 SWGEEVSSNALEVHIHNLRKKL----GSDFIKTVRGVGYRVN 217


>gi|33866766|ref|NP_898325.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639367|emb|CAE08751.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 262

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++D         G  ++  +     + L      D+  ++  L       L
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     S +P++ ++     +  +  F+SG DD + KP    E+ ARV A+ RR
Sbjct: 63  TLCQRLRRDDRTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRR 122

Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      N     GP+ +  +  +         L   E  +L  L+   G+ VA +
Sbjct: 123 SDRAPVGSSNHNEILSYGPLTLVPERFEAIWFDTPVRLTHLEFELLHCLLQRHGQTVAPS 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I   ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 183 LILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|319780662|ref|YP_004140138.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166550|gb|ADV10088.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 230

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD   +++         G+   G                D+  ++  +       L
Sbjct: 5   ILVADDDPHIREVICFALEKAGMKTTGVADGAAALQAIGRRAPDLVVLDIGMPE--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R +R  S VP++ +S        +   + G DD V KP   RE++ARV  I RR + 
Sbjct: 63  EVCRRLRHISDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRRARP 122

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +      + R   G + +          G+   L   E  IL+  +A     + +  + +
Sbjct: 123 AVPEPADDRRFSHGKLALAPASHTASFDGKPLSLTGIEFSILKGFLARPAHVLDRDAVTA 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           + Y   +  V    V+SHI  +R KL      D +++   +G+ +
Sbjct: 183 SAY-AANIHVAGRTVDSHIRNIRAKLAAVGCPDVIETVHGVGFRL 226


>gi|302386943|ref|YP_003822765.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197571|gb|ADL05142.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 235

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 10/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    L    G     F +   +  L+    E++S I   L+       E
Sbjct: 9   LVVDDEPKILEVVCLLLESKGFR--TFPAENGQRALEIFESENISLIILDLMMPDISGEE 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R IR  S+VP+I ++        ++    G DD V KP   +E+ AR+ A+ RR +  
Sbjct: 67  VCRAIRKKSRVPIIMLTAKVDESDVVEGLGLGADDYVVKPFGLKELYARIEAVLRRTESD 126

Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
               V  N    G +    +  +   +G    L   E +IL  L+   GK   + ++  A
Sbjct: 127 LVPLVKRNSWRNGDLVTDFEKNEVRKKGVSLTLTPSELKILSVLIKYPGKVFTREELIEA 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
                  A  +  ++SHI  +RKK+ +       V +   LGY  
Sbjct: 187 ALDKG-FAGYDRAIDSHIKNIRKKVEDDPKNPVYVRTIPGLGYKF 230


>gi|119471571|ref|ZP_01613985.1| response regulator (activator) in two-component regulatory
           [Alteromonadales bacterium TW-7]
 gi|119445514|gb|EAW26800.1| response regulator (activator) in two-component regulatory
           [Alteromonadales bacterium TW-7]
          Length = 230

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 90/221 (40%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G+ +      +       +   D+  ++  L   G+   
Sbjct: 4   ILLVEDDLGLQQLTKDYLEHNGLEVAVLERGDEVFGYLENNHADLMILDVMLP--GKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ ++        +   + G DD V KP   R +LARV A+ RR + 
Sbjct: 62  SVCRQVRDKFSLPILMLTAKSEDFDQVLGLELGADDYVIKPAEPRVLLARVNALLRRGQT 121

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              ++   + G + +    R  ++  +   L   E  +L  L +N G+ +++  +   + 
Sbjct: 122 VTKTSEELQFGDLIIDKTSRIVQLSDKEIVLTSHEFELLWLLASNAGQVLSREHVHQHMI 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
           G       +  V+  +S++RKKL +       + +    GY
Sbjct: 182 GR-QYDGLDRTVDVRVSRIRKKLGDNSDKPFRIKTVWGQGY 221


>gi|126433314|ref|YP_001069005.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126233114|gb|ABN96514.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 237

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 83/208 (39%), Gaps = 13/208 (6%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ--VPL 75
               DG+ +           L  + R DV+ ++  +   G   + L R +R   +  VP+
Sbjct: 20  YLERDGLEVAIARDGTEALRLLGTERIDVAVLDVMMP--GPDGMTLCRTLRQRGEHTVPV 77

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGPI 131
           I ++        +   ++G DD + KP   RE+  RV ++ RR      V+      G +
Sbjct: 78  ILLTALGEEDDRIAGLEAGADDYLTKPFSPRELALRVRSVLRRSPTPVGVTPVDLTVGAL 137

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            + +  R   V G    L  RE  +L + + +      + ++   ++    +  + + V 
Sbjct: 138 TISAAARSVTVDGRPVSLTNREFDLLLFFITHADTVFTREELLKQVWRW--DFGDLSTVT 195

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            H+ +LR KL ++     V +    GY 
Sbjct: 196 VHVKRLRSKLGDQH---RVQTVWGRGYM 220


>gi|329938744|ref|ZP_08288140.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302235|gb|EGG46127.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 249

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +        +G  +      +         R D   ++  L       L 
Sbjct: 26  LVVDDELSITELLSMALRYEGWRIRSAGDGQGAVRAAREFRPDAVVLDLMLPD--MDGLS 83

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              R+ R    VP++ ++   + +  +    +G DD V KP    +++AR+  + RR   
Sbjct: 84  ALGRLRRELPDVPVLFLTAKDAAEDRIAGLTAGGDDYVTKPFGVEDVVARLRGLIRRSGA 143

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++ R++     G + +  D  +    G    L   E  +L +LM N  + ++K QI   +
Sbjct: 144 ADRRSDAVLVVGDLILDEDSHEVSRGGTDIHLTATEFELLRFLMRNPRRVLSKAQILDRV 203

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +D   + NVVE +IS LR+K+ +      + ++R  GY I
Sbjct: 204 W-SYDFGGQANVVELYISYLRRKI-DAGREPMIHTRRGAGYLI 244


>gi|328480232|gb|EGF49152.1| two-component response regulator [Lactobacillus rhamnosus MTCC
           5462]
          Length = 188

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 85/186 (45%), Gaps = 8/186 (4%)

Query: 43  REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102
             D++ +   ++      +++ + +R  SQ+P+I +S   +    +    +G DD V KP
Sbjct: 3   NPDIALMILDIMMPNMSGMDVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKP 62

Query: 103 IHHREILARVAAIYRRLK-----VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRI 156
            +  E++ARV ++ RR +        +  E GP+ +  D  +   + G+   L   E  I
Sbjct: 63  FNPLEVMARVKSLLRRSQNEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGI 122

Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRF 215
           L  L ++  +  +  +IF  ++   +  V    V  H+S LR K+     G   +++   
Sbjct: 123 LYLLASHPNRVFSADEIFERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWG 181

Query: 216 LGYSID 221
           +GY ++
Sbjct: 182 VGYKVE 187


>gi|307329899|ref|ZP_07609053.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306884510|gb|EFN15542.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 246

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V++        +G + E   +++  + L      D   I   ++      L
Sbjct: 13  ILIVDDEPAVREALQRSLVFEGYATE--TAVDGLDALDKVGSYDPELIVLDVLMPRMDGL 70

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
              R +RA    +P++ ++   ++   +   D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 71  TAARRLRATGVTLPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARLRALLRRSS 130

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                       +    G +R+    RD    G    L R E  +LE  +A+  + + + 
Sbjct: 131 YTGLQGAALPEGDVMAFGDLRMDLTTRDVTRGGRRVELTRTEFTLLEMFLAHPRQVLTRE 190

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           QI  A++G FD     N ++ ++  LR+K         V + R +GY +
Sbjct: 191 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYVL 238


>gi|294498815|ref|YP_003562515.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|295704137|ref|YP_003597212.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294348752|gb|ADE69081.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294801796|gb|ADF38862.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 224

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGD-DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +L +D   + +    +     G ++E            S A  DV  ++  +       +
Sbjct: 4   LLAEDDLQLGELVSYMLKKKGGYNVEWVTEGNDAYDYASEAHYDVLILDWMMPN--GDGI 61

Query: 62  ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +R       ++ ++   ++Q  +   D+G DD V KP    E+LAR+ A+ RR  
Sbjct: 62  DVCKRLRKEGYAGAILMLTAKDAVQDRIQGLDAGADDYVIKPFEIDELLARLRALSRRNY 121

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                   E   + +    +  +   E   L  RE ++L++L+ N+G+ +++  I   ++
Sbjct: 122 APILEEEVEIASMILKRASQTVQFDEEFIQLSPREFQLLDFLVKNKGQVLSRDIILDRVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G ++  V    +++ +  LRKKL      D + S R +GY I+
Sbjct: 182 G-YESDVSIKTIDATVKLLRKKLEKFNKQDLIQSIRGVGYKIE 223


>gi|229182985|ref|ZP_04310217.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228600442|gb|EEK58030.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 213

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 77/209 (36%), Gaps = 6/209 (2%)

Query: 13  DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72
           +         G +     S E       +       ++  +        E  + IR+ S 
Sbjct: 3   ELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMP--KMDGWETCKKIRSFSN 60

Query: 73  VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132
           VP+I ++        +     G DD V KP H  E+ AR+ A+ RR      + +   I 
Sbjct: 61  VPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN-QRTQIQYHGIL 119

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
                    V  E   L   E  +L   + +    +++ Q+   I+GL +   E+  V+S
Sbjct: 120 WDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL-NTNTEDRTVDS 178

Query: 193 HISKLRKKLRNK--LGFDPVDSKRFLGYS 219
           HI  LR KLR       + + +   +GY 
Sbjct: 179 HIRNLRDKLRKVNFPIDNHLKTVYGVGYR 207


>gi|85060158|ref|YP_455860.1| DNA-binding transcriptional regulator CpxR [Sodalis glossinidius
           str. 'morsitans']
 gi|84780678|dbj|BAE75455.1| two-component response regulator [Sodalis glossinidius str.
           'morsitans']
          Length = 232

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G +++  +  E       S+ + +          G   L
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFNVQVAHDGEQALSQLDSSIDLLLLDVMMPRKNGIDTL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 64  ---KELRQQQQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +  +          E   +R+    ++    G    L   E  +L  L  + G+ V++  
Sbjct: 121 TEQQQTGEAGTPSLEVDFLRLNPGRQEATFDGTPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   K G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPERKDGHPWFKTLRGRGY 226


>gi|94984238|ref|YP_603602.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554519|gb|ABF44433.1| two component transcriptional regulator PhoB [Deinococcus
           geothermalis DSM 11300]
          Length = 229

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 103/223 (46%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           V+I+D + V++         G+ +    S++  +  ++    D   ++  L   GE  L 
Sbjct: 5   VVIEDESTVREVLRFHLERAGLRVSALESVQGAQ--ETLRGADALVLDWMLP--GESGLA 60

Query: 63  LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
             R +R   ++   P++ ++   +    ++  +SG DD + KP    E++ARV A+ RR 
Sbjct: 61  YLRRLRGDPELRRLPVLMLTARAAEAERVEGLESGADDYLTKPFSAAELVARVRALLRRA 120

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +  +   GP+ +     +  + G    L RRE  +L +L  N G+   +T++   ++
Sbjct: 121 QPDTPQQLSHGPLSMDLGAAEARLAGIRLHLTRREFDLLAFLTQNAGRVYTRTELLDRVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           G  D    E  V+ H+++LR  L +       +++ R  GY +
Sbjct: 181 GA-DFLGGERTVDQHVTQLRAHLGDDPARPRFLETVRGKGYRM 222


>gi|295093801|emb|CBK82892.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 224

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G ++    +       +   + D+  ++  +        
Sbjct: 5   ILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAAL-KEVEKKPDIILLDVNMPD--IDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR +   P+I ++        +  F  G DD V KP    E+ AR+AA  RR K 
Sbjct: 62  TVCERIRDYVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHLRREKR 121

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N  ++      + +    R      +     ++E  I+ +L  N+G    +  I+  ++
Sbjct: 122 HNTSSKVQFDEDMVIDYSSRIVFYHNKDMAFTKKEFDIISFLSQNKGIVFDRETIYEKVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           GL D   +  VV  HI ++R K  +      +++    GY 
Sbjct: 182 GL-DGIGDNTVVTEHIRRIRAKFLSLGDRPYIETVWGCGYK 221


>gi|221124418|ref|XP_002164240.1| PREDICTED: similar to ompR homolog [Hydra magnipapillata]
 gi|260220990|emb|CBA29107.1| Phosphate regulon transcriptional regulatory protein phoB
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 242

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + + +        +G         +  +    +   D+  ++  L   GE  L 
Sbjct: 5   LVVEDESAIAELIAVNLRHNGFRPRWAMDSDSAQREIDAGVPDLILLDWMLP--GESGLT 62

Query: 63  LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           L +  R+     +VP+I ++        +   D+G DD + KP   +E+LARV A+ RR 
Sbjct: 63  LAKRWRSDPRTKEVPIIMLTARGDEADRVAGLDAGADDYIAKPFSTKELLARVRAVLRRR 122

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + +        + +         +     L   E ++L YLM +  +  ++ Q+   +
Sbjct: 123 TPESTGEALTIAGLTLDPATHRVSFEETALKLGPTEFKLLHYLMGHAERVHSRAQLLDNV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G     +EE  V+ H+ +LR+ L +      V++ R  GY +
Sbjct: 183 WGDH-VYIEERTVDVHVKRLREALAHAGS--MVETVRGAGYRL 222


>gi|120553228|ref|YP_957579.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120323077|gb|ABM17392.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 227

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +  +++  DD  +++  +  +       +   D++ ++  L       L
Sbjct: 3   ILLTEDDHPLANTMLSMLRDDQNTVDWVDDGQQALNALLNESFDLAILDLTLPRV--DGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ R +R    ++P+I ++    L   L   D+G DD + KP    E+ AR+ A+ RR  
Sbjct: 61  DIVRQVREQGVELPIIILTARSELTEKLQGLDAGADDYLTKPFAMSELKARIRAVTRRRS 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +  +  + G + +  D    +V  E F LPR E +IL YLM +  +   + ++   +YG
Sbjct: 121 GTRVSGLKVGRLVLDPDSAQLQVGTETFVLPRSELQILHYLMRHPDQVATRRRLEEQLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +D+  E N +E H+  LR++L    G   + + R +GY +D
Sbjct: 181 -WDQGAESNALEVHVHHLRRRL----GKQAIRTVRGVGYMLD 217


>gi|319424525|gb|ADV52599.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 231

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 5/208 (2%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQV 73
                 D   S++  +  E   +       D + I+  L       + L R +R      
Sbjct: 16  LKQHLLDAHYSIDVASDGEEGLFQALECNYDAAIIDVGLP--KLDGISLIRSVRQKERDF 73

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132
           P++ ++   S Q  ++  D+G DD + KP H +E++AR+ A+ RR     +     GP  
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSAGKASPLVYNGPFS 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           + +   +     E+  L   E ++ E+LM ++G+  +KT +   IY   D  ++ NV+E 
Sbjct: 134 LNTSSLEIRKGDELINLSGSEYKLFEFLMLHQGEVKSKTVLTEHIYDQ-DFDLDSNVIEV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I +LRKKL     ++ +++ R  GY +
Sbjct: 193 FIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|157963828|ref|YP_001503862.1| osmolarity response regulator [Shewanella pealeana ATCC 700345]
 gi|157848828|gb|ABV89327.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 241

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R     +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 PEVPGAPTQQEEEITFGEYSLNLATREMHHGEESIALTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233


>gi|118445101|ref|YP_879164.1| two-component response regulator [Clostridium novyi NT]
 gi|118135557|gb|ABK62601.1| two-component response regulator [Clostridium novyi NT]
          Length = 231

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D   +      +       +    +   E+ L+    E+   +   ++  G    +
Sbjct: 8   LVIEDEQSISKFIKLVLQKQNFEV--IQAFSGEDGLKKVTTENPIVVILDIMLPGIDGFK 65

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  I+R +   + +I ++        +   ++G DD + KP +  E+ AR+ ++ RR+  
Sbjct: 66  VCEILRKNYPSIGIIMLTALGQDIDKIKGLENGADDYMIKPFNPLELAARITSLIRRMNF 125

Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           SNN +     +G  +V  + +      +   L  +E  +L+  M N G  +++ ++    
Sbjct: 126 SNNTSSDTLVSGEFKVNLNSKIAYKNDKELNLTPKEFILLKIFMENIGTSLSRDKLLDLA 185

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           +G ++   +  +V+ +I +LR KL +       + +   +GY
Sbjct: 186 WG-YNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGVGY 226


>gi|91777087|ref|YP_546843.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91711074|gb|ABE51002.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 241

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +++       D G  +    +    E  +   +E V+ I   L+  GE  L
Sbjct: 7   ILVVDDDHEIRELLTDYLRDAGFHVS--EAANGREMWRVVNKEPVNLIVLDLMLPGEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA   +P+I ++   +L   +   + G DD + KP   RE+LAR+  I RR + 
Sbjct: 65  SLCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRN 124

Query: 122 SNNR---------AETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKT 171
             N+               R+ +  R     +G V  L   +  +L  L+ +  + +++ 
Sbjct: 125 DRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRPLSRD 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            +   +YG    A++   ++  IS+LR  +         + + R  GY +
Sbjct: 185 FLVEHVYGKESHAMD-RSIDVCISRLRHHIEADTRNPTIIRTVRNAGYML 233


>gi|310658906|ref|YP_003936627.1| DNA-binding response regulator in two-component system with yedv
           [Clostridium sticklandii DSM 519]
 gi|308825684|emb|CBH21722.1| DNA-binding response regulator in two-component system with YedV
           [Clostridium sticklandii]
          Length = 225

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   + +  + L   +   ++     + E+ L  +   D   I   ++       
Sbjct: 3   ILLAEDEKELSNALVMLLSHNNYVVDA--VYDGEDALSYAQEIDYDIIILDIMMPKLNGY 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R  + + P++ ++    +   +   + G DD + KP   +E+LAR+ A+ RR +
Sbjct: 61  QVLSKLREKNCKAPILMLTAKSHVDDKVTGLELGADDYLTKPFEMKELLARIKALLRRPQ 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N +  E G + +  D        +   L ++E + +E L+ N  + ++K  I   I+G
Sbjct: 121 NFNADILEFGDMYLNRDTCQIICNNQQVVLNKKEFQTMELLILNSKQILSKDLIMDKIWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++   E NVV  +IS LRKKL        + S R LGY I+ 
Sbjct: 181 -YESDAEINVVWVNISSLRKKLAKLDSKVTIASIRGLGYKIEV 222


>gi|227505512|ref|ZP_03935561.1| two component system response regulator [Corynebacterium striatum
           ATCC 6940]
 gi|227197876|gb|EEI77924.1| two component system response regulator [Corynebacterium striatum
           ATCC 6940]
          Length = 231

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G   E     +  E + +    D   I   L+  G   +
Sbjct: 5   ILVVDDDPAISEMLTIVLEAEGF--EPIAVTDGNEAVPAFQENDPDLILLDLMLPGMNGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119
           ++ R IR  S VP++ ++        +   +SG DD + KP   +E++AR+ A  RR   
Sbjct: 63  DICRAIRTESSVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDS 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             S    E G + +           GE   L   E  +L  +    G+   +  +  +++
Sbjct: 123 ASSGELIEVGDLVIDVPEHTVTRAGGEEISLTPLEFDLLLEMARKPGQVHTREALLESVW 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219
           G +  A +  +V  H+ +LR K+ +      +  + R +GY 
Sbjct: 183 G-YRHASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 223


>gi|146283051|ref|YP_001173204.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
 gi|145571256|gb|ABP80362.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
          Length = 243

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D             + G +++   S         S   D+  ++  +   G    
Sbjct: 19  LLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMP--GLDGW 76

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++RA    VP++ ++    ++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 77  EVLRLVRASGNEVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 136

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    + +   ++V    R     G+   L  +E  +LE L+  RG+ + K+ I S ++
Sbjct: 137 ATALQTQLQVADLQVDLLKRRATRAGQRIDLTAKEFALLELLLRRRGEVLPKSLIASQVW 196

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY +D
Sbjct: 197 DM-NFDSDTNVIEVAIRRLRAKIDDGFEPKLIHTARGMGYMLD 238


>gi|229056358|ref|ZP_04195775.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228720977|gb|EEL72521.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 223

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       +    E L+   ++D   I   ++       
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFC--MKATSGLEALELIEQKDFDIILLDVMMPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            ++      I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DSFVSFNGIEWDKTKHTVTVYNEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
              +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 QTDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYK 219


>gi|260682519|ref|YP_003213804.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686118|ref|YP_003217251.1| two-component response regulator [Clostridium difficile R20291]
 gi|260208682|emb|CBA61470.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212134|emb|CBE02769.1| two-component response regulator [Clostridium difficile R20291]
          Length = 238

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          +   +E        + L   +++D   +   ++  G    E
Sbjct: 13  LIIDDDKDLCILLKKSISIE--QIEANYCHSGRDGLVELSKQDYQLVVLDVMMPGMDGFE 70

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR +S +P++ ++      + +    +G DD + KP    E  ARV ++ RR    
Sbjct: 71  TMEQIRKYSSIPILMLTSKSDNYSKVHGLRAGADDYLTKPFEITEFTARVLSLIRRYTRF 130

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N       +     + +  D       GE   LP +E  +L Y   ++GK + K QI+ A
Sbjct: 131 NPKNEEPQQLSFKGLLIDLDQHTVTTNGEPMLLPPKEFGVLLYCARHQGKILTKQQIYEA 190

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G      + N + + IS+LRKK+  +      + + + +GY  +
Sbjct: 191 VWGEPYVYDDSN-IMAIISRLRKKIELDPSSPIYLQTIKGIGYQFN 235


>gi|300088634|ref|YP_003759156.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528367|gb|ADJ26835.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 223

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 4/222 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +   +    G+ G  +E   +    E    +   D+  ++  L  K     
Sbjct: 3   ILLIDDDEQLCATFSRAAGEAGHVVECVYTGGDGETFAGNTPFDLIILDIMLPDK--DGF 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + +R      P++ ++   + Q      ++G DD + KP  + E+ AR+ A+ RR  
Sbjct: 61  SVCQDLRKAGVTTPILMLTARGTAQEKAQGLNTGADDYLAKPFEYNELFARICALGRRPR 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++    E   I +        ++GE   L   E R+LE    N    + + +I   I  
Sbjct: 121 QMAPLVIEIDGITIDITAHRVSLKGETVELTANEFRVLELFANNPNVIIERVRIEEYIST 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + NVV+  I +LR+KL       P+ + R  GY ++
Sbjct: 181 THDKDFKSNVVDVIIKRLREKLGWDPQTGPIQTVRGCGYRLN 222


>gi|262376401|ref|ZP_06069630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308540|gb|EEY89674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 223

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +    L       +   N+             D+  ++  L       +
Sbjct: 4   ILIIEDDFMIAESTETLLKLHQFDVHWVNNGIEGLKQLQQQVYDIVLLDLGLPM--MDGI 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR     +P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 62  LVLKNIRQKFPNLPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALIRRSG 121

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +      +N +   G + +  +       G+   L  RE  IL  ++ +  K  +K  + 
Sbjct: 122 LKNTGIDTNKKLSHGSLELDLEQHIALFNGQAIELSNREWSILMAMLNHPNKIFSKNDLE 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y  FD  V  N VE +I  LR KL    G D + + R LGY +
Sbjct: 182 DKLYD-FDSDVSSNTVEVYIHHLRAKL----GKDFIRTIRGLGYRL 222


>gi|241895300|ref|ZP_04782596.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241871606|gb|EER75357.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 231

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       + G  ++  +  E   +   S   D   ++  L   G+   
Sbjct: 8   LLVVEDDYALNDTVKETISELGEVVQVHDGDEGW-FEIESGVYDAVVLDVMLP--GQDGF 64

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + +  +     +P++ ++    +   +  FD G D+ + KP +  E+LAR+  + R   
Sbjct: 65  TILKKAKEQFPNLPILMLTAKGEIADKMQGFDLGADEYITKPFYKEELLARLKTLLRHTG 124

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           V   +   E G ++++ D     V      L  RE  +L YL+ + G+ V K QIF  ++
Sbjct: 125 VLGQDGALEVGNVQIYVDQHKVLVDDTEVSLQGREFGLLVYLVQHVGQIVTKDQIFDRLW 184

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           G FD      VVE ++S LRK LR       + + R +GY+++
Sbjct: 185 G-FDSDTSLTVVEVYMSNLRKNLRQAEAQVNIKTLRNVGYTLN 226


>gi|268593356|ref|ZP_06127577.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM
           1131]
 gi|291311053|gb|EFE51506.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM
           1131]
          Length = 232

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 16/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            +L+DD   +      L   +G ++    + + E+ LQ   +  D+  ++  +  K    
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFNV--VIAYDGEQALQQIDSSIDLLLLDVMMPKK--NG 59

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +E  + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ A+ RR  
Sbjct: 60  IETLKELRQIHQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSN 119

Query: 121 VSNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            S             +   +++    ++     E+  L   E  +L  L  + G+ V++ 
Sbjct: 120 WSEQTQGDNSNTPVLQVDKLQLNPGRQEASFDDEILDLTGTEFTLLYLLAQHLGQVVSRE 179

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
            +   + G      +   ++ HIS LR+KL     G     + R  GY
Sbjct: 180 HLSQEVLGKRLTPFD-RAIDMHISNLRRKLPERTDGQPWFKTLRGRGY 226


>gi|218438697|ref|YP_002377026.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171425|gb|ACK70158.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 597

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +          +  +++     E         +  +  ++  +       L
Sbjct: 3   ILLIEDDPFISQLISTKLIANRYTVDLVTDGELGLEFALMGKYSLILLDVIIPI--LDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L   +R +  + P+I ++   S +  +   D+G DD V KP    ++LAR+ A+ RR  
Sbjct: 61  SLCHQLRDSGCETPIIMLTAKNSDEDVITGLDAGADDYVTKPFDVEQLLARIRALIRRQD 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +K   +    G ++          Q +V  L  +E  ILE  + +  +  +++ I   ++
Sbjct: 121 IKRFPSILTWGALQFDPILIKVTYQDQVINLSPKEYSILELFLRHPQRIFSRSDIIDRLW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            + DE+  E  V + I  LR+KL       + +++   LGY +
Sbjct: 181 -MIDESPTEAAVTNLIKDLRRKLTAAGMKEELIETIYKLGYRL 222



 Score = 82.3 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 5/120 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           ++DD  +     +AL     + +   +  +    + ++   DV  ++  +       LEL
Sbjct: 480 IVDDDPIFLKTLMALLQPWELQVTTLSKSDRFWQVLTTTNPDVLLLDLEMPTF--NGLEL 537

Query: 64  PRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            R++R  S+   +P++ ++ +    +    F +G DD ++KPI   E+LARV     R +
Sbjct: 538 CRVVRQDSKYNHLPIVVVTAHTDDNSIQQVFAAGADDFISKPITDSEVLARVINQIERSR 597


>gi|90422637|ref|YP_531007.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90104651|gb|ABD86688.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 237

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 111/221 (50%), Positives = 153/221 (69%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           MFV+IDDR  V  GY   F  +G+   GF+S +F +WL+ +   D+ AI AFL+G     
Sbjct: 1   MFVVIDDRKGVIQGYADGFDREGIVSIGFSSTDFRDWLEGALGNDLGAIGAFLLGDCADR 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           + LP  IR   + P+I ++    L++T++ F++GVDDVVN P+H REILAR A I RR  
Sbjct: 61  ISLPPSIRNRCRAPIIALNGLKHLKSTIELFEAGVDDVVNAPVHVREILARTAVIRRRTI 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               +  T  IRVF DGRDPE+ G    LPRRE RILE+L++++GK + K Q+F+AIYGL
Sbjct: 121 GPAEQTPTSVIRVFLDGRDPEIGGRTLALPRRELRILEHLVSHQGKWLTKNQMFNAIYGL 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           FD + +ENV+ESH+SKLRKKLR  LG+DP++SKR++GY +D
Sbjct: 181 FDASFDENVIESHVSKLRKKLRGHLGYDPIESKRYMGYRLD 221


>gi|331087248|ref|ZP_08336318.1| hypothetical protein HMPREF0987_02621 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408934|gb|EGG88395.1| hypothetical protein HMPREF0987_02621 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 231

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   + +        +G ++      +    +  S   D+  I+  +       + 
Sbjct: 5   LVCDDDKEIVEAIEIYLRQEGYNVLKAYDGQEAIKVLDSTEVDLLIIDVMMP--KLDGIR 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR  + +P+I +S        +   + G DD + KP +  E++ARV +  RR    
Sbjct: 63  ATLKIREKNSLPIIILSAKSEDADKILGLNVGADDYLTKPFNPLELVARVKSQLRRYTQL 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  ++    G +++  + ++  V G+V  L   E  IL  L+ N+GK  +  QI+
Sbjct: 123 GSTVVEKKSSVFTVGGLKIDDELKEVTVDGDVIRLTPIEYNILLLLVKNQGKVFSINQIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +I+   D    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 183 ESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIE 229


>gi|310828178|ref|YP_003960535.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739912|gb|ADO37572.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 219

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   + +    +   DG  +    +L     L  +  E    I   ++  G    
Sbjct: 4   ILAVDDEKGILNLVKRVLEKDGHQV---RTLSDPAALSMNGLEAFDLILLDVMMPGTDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR +   P++ ++     +  +     G DD + KP  + E+ ARVAA  RR K 
Sbjct: 61  TLCRKIRENVDCPILFLTAKTMEKDIMYGLGIGGDDYITKPFGNGELRARVAAHLRREKR 120

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      IR      +  +  +   L + E  I E+L  + G+  +K QI+ A+YG 
Sbjct: 121 EKRSVLSLDGIRFNLGAHEMIIGEQKVSLTKSEYAICEFLARSHGQVFSKEQIYEAVYG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           ++   + + +  H+  +R KL +  G  P+++   +GY 
Sbjct: 180 YEGEGDSSAIAEHVKNIRAKL-SVYGCAPIETVWGIGYK 217


>gi|317132867|ref|YP_004092181.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470846|gb|ADU27450.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 229

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 17/230 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++I+D   +     A    D + +E F  +   +    ++ + +     I   L+  G 
Sbjct: 4   ILIIEDDTAI-----AAIERDYLLVEQFEVVISQDGRSGMEKALQGSFDLILLDLMLPGI 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               + R +R    +P++ ++        +     G DD + KP     ++ARV A   +
Sbjct: 59  DGFTVCRRLRESLDIPILMVTARREDIDKIRGLGLGADDYIEKPFSPSVLVARVKANLAQ 118

Query: 119 L-------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   + +  +   G IR+ +D     V      L  +E  +L ++  N    + + 
Sbjct: 119 YARLRKTDRTAPIQIAIGSIRINTDTHRVYVNDTEIELKNKEYELLLFMAQNADVVLNRE 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            ++  I+G+ D   +   V  HI++LR K+    G    + + R  GY  
Sbjct: 179 TLYERIWGM-DAMGDNATVAVHINRLRDKIEEDPGNPRYIQTVRGAGYRF 227


>gi|209963810|ref|YP_002296725.1| two component response transcriptional regulator [Rhodospirillum
           centenum SW]
 gi|209957276|gb|ACI97912.1| two component response transcriptional regulator [Rhodospirillum
           centenum SW]
          Length = 219

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 12/225 (5%)

Query: 1   MFVLI--DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M VL+  DD AL +          G +++     E   +L  +   D   ++  L  +  
Sbjct: 1   MRVLVAEDDEALRRQ-LRDALAASGYAVDEAPDGEEAAFLGETEPYDAVVLDLGLPVR-- 57

Query: 59  KVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             L   R  R    V P++ ++   + Q  ++  D+G DD + KP    E+LAR+ A+ R
Sbjct: 58  DGLSALRGWRQQGIVTPVLILTARGTWQEKVEGIDAGADDYLAKPFRMEELLARLRALIR 117

Query: 118 RLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           R           GP+ + +      V G +  L   E ++L+YLM ++G+ V++T++   
Sbjct: 118 RAGGHAAADLRCGPVLLDTRTGRVSVDGRLVSLTAHELKVLDYLMHHQGRVVSRTELTEH 177

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +Y   D   + N +E  + +LR+KL    G D + ++R LGY +D
Sbjct: 178 VYAQ-DFDRDSNTIEVFVGRLRRKL----GVDVIRTERGLGYRMD 217


>gi|168702458|ref|ZP_02734735.1| two component transcriptional regulator, winged helix family
           protein [Gemmata obscuriglobus UQM 2246]
          Length = 230

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +         ++G +++     E  +    S   DV  ++  L       L 
Sbjct: 2   LLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKV--DGLS 59

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNK-PIHHREILARVAAIYRR-L 119
           L +  RA      ++ ++        +   D+G DD ++K  +   E+ AR+ A+ RR  
Sbjct: 60  LLKRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGH 119

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +       + + +  R     G    L  RE  +LE+L  +RGK V ++ I+  +Y 
Sbjct: 120 QQKDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYD 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +DE    NVV+ +I  LR K+  +     + ++   GY +
Sbjct: 180 EYDENT-SNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYML 219


>gi|255318782|ref|ZP_05360008.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262378954|ref|ZP_06072111.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255304038|gb|EET83229.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262300239|gb|EEY88151.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 225

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 103/226 (45%), Gaps = 14/226 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +  I L      +++  N+      L  +   D+  ++  L       +
Sbjct: 4   ILIIEDDFMIAESTITLLQYQQFAVQWVNNGIDGLKLLKTQEFDIVLLDLGLPL--MDGM 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + IR     +P++ IS    L   +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 62  QVLKQIRQQKPALPVLIISARDQLHNRVDGLNQGADDYLVKPYEFDELLARIQALLRRST 121

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +++ + ET      G + +  +      + E   L +RE  IL  LM+   K  +++ + 
Sbjct: 122 ITSIQTETVQILQHGDLILDLEQHSALFKNEHIDLSKREWAILIPLMSYPYKIFSRSSLE 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +Y + D  +  N +E +I  LR KL    G D + + R LGY +
Sbjct: 182 DKLYDI-DSEINSNTIEVYIHHLRTKL----GKDFIRTIRGLGYRL 222


>gi|229819651|ref|YP_002881177.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565564|gb|ACQ79415.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 230

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 10/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G  +    +      ++ +A  D+  ++  L       L+
Sbjct: 8   LLAEDDPAIAEPLARALTREGYDVSVHGTGRG--AIEGAASTDLFVLDLGLPD--MDGLD 63

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R IR      P++ ++        +   D+G DD V KP    E+LARV A+ RR   
Sbjct: 64  VARWIRNQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRAGA 123

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               ++      +RV               L  +E  +L  L+   G  V++  +   ++
Sbjct: 124 DGGDDDELSAQNVRVDVAAHRAFQGERELQLTAKEFELLRVLVREAGSVVSRESLMREVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
              D       ++ HIS LR+KL  +      + + R +G+  +
Sbjct: 184 -ASDPTGSTKTLDMHISWLRRKLGDDANAPRYISTVRGMGFRFE 226


>gi|187935151|ref|YP_001886052.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187723304|gb|ACD24525.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 229

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 90/220 (40%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++  G       DG  +    ++     + +    D+  ++  L        
Sbjct: 4   ILIVEDDIILNSGLCYNLQLDGYVVTPKYNINSTLKILNIENFDLIILDVNLPD--GNGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + I+     P+I ++        L  F  G DD + KP +      ++AAI RR   
Sbjct: 62  DLCKSIKQIQDTPIIFLTACDLEDDILSGFKLGADDYITKPFNINIFRQKIAAILRRCTK 121

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   +   + +  +     V   V      E ++L+ L++N+G+ + +  +   ++ 
Sbjct: 122 NLFSCIYKDSNLTIDFNEMTATVNDNVISFTPTEFKMLKILISNKGQVLTRQVLLEKLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                V+E+ +  +I++LR K+  +     + +   +GY 
Sbjct: 182 CDRNFVDEHTLTVNINRLRNKIETE-NVKYIKTIYGMGYM 220


>gi|170694195|ref|ZP_02885350.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170140935|gb|EDT09108.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 220

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61
           +L++D  L+  G      D G++++  +         ++   ++  ++  L    G ++L
Sbjct: 4   LLVEDDELIGSGVEEGLRDAGLTVDWAHDGREAMLALTTTEYELVVLDLGLPKLSGTELL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           +  R  R     P++ ++   ++   +    +G DD + KP    E++AR  A+ RR   
Sbjct: 64  DWLRGRRD--DTPVLVMTARDTVADRVGGLTAGADDYLGKPFDLSELIARCRALLRRAHG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S    +   + V          G   PL  RE  +L  L+ ++G  +++ +I   +YG 
Sbjct: 122 RSTETIQYRDLIVEPSTFTVTQGGLRQPLTSRECAVLIELLTHQGTPLSRARIEENLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + E VE N VE HIS LRKKL    G   + + R +GY ++
Sbjct: 181 WQEEVESNTVEVHISNLRKKL----GPGIIKTIRGVGYVVE 217


>gi|330503204|ref|YP_004380073.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328917490|gb|AEB58321.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 227

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +      G S++          L SS   D+  ++  L   G    
Sbjct: 3   ILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHYDLIVLDIMLP--GIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++ + +R    S+VP++ ++   +L   L   ++G DD + KP    E++AR+ AI RR 
Sbjct: 61  QVCKRLREDGRSEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRRS 120

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + S  R  +   +    D       G+   L     ++L  LM      V +  +  A++
Sbjct: 121 RGSRKRQLQVADLSYDLDTLHVSRAGQSLKLNPLGLKLLAILMQRSPAVVRREALEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ L        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVLDKPFPTPLLHTIHGVGYRL 220


>gi|256112415|ref|ZP_05453336.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 3
           str. Ether]
 gi|265993852|ref|ZP_06106409.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether]
 gi|262764833|gb|EEZ10754.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether]
          Length = 239

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +  +       +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPR--MDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR+  
Sbjct: 68  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +             E G + +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 128 RDGTAKPAGQQAKPLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236


>gi|254468934|ref|ZP_05082340.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
 gi|207087744|gb|EDZ65027.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
          Length = 237

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 95/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+IDD   ++D       D G         +  + +   A  D+  ++  L    E  L
Sbjct: 5   IVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPD--ENGL 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + +R +  ++P+I ++        +   + G DD + KP + RE+LAR+ +I+RR  
Sbjct: 63  DICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHE 122

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +VS    +          R  +   +   L   E  +L+  + N  + +++ 
Sbjct: 123 MELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLSRD 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           QI     G  +  V +  ++  IS++RK +  +      + +K   GY  +
Sbjct: 183 QIMQLAKGK-ELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVFE 232


>gi|268611060|ref|ZP_06144787.1| response regulator [Ruminococcus flavefaciens FD-1]
          Length = 226

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +            +S++ F   E       +    +  ++  L  K     
Sbjct: 4   ILMIEDDPELGTLVRDFLCRAELSVDLFGDAESGIAALGNETYRLILLDVMLPKK--DGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                +R     P++ +S     Q+ L  + +G DD + KP     +LA++ A+ +R   
Sbjct: 62  TFCSELRKKYDTPVLMMSARDDDQSKLTGYGTGADDYITKPFSIPVLLAKIRALMKRAVV 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  N+      I +          G V  L  +E  +L  +M ++G+ + K ++F  ++G
Sbjct: 122 KPENHEISGCGITLDMQNHVVRKNGTVIKLNVKEYELLRTMMEHQGEIMDKNKLFDTVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            FD   E + V  HI  LR+K+ +       + +    GY  
Sbjct: 182 -FDCFSEPSTVSVHIRWLREKIEDDPNEPKIIQTVWKAGYRF 222


>gi|253997123|ref|YP_003049187.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983802|gb|ACT48660.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 221

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++           G + +        E        D++ ++  L  +    L
Sbjct: 3   LLLVEDDPILGKQLQTSLQRAGYATDLATDGIEAEIQGKLEPYDLAILDLGLPKR--NGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+    R A    P+I ++     Q  +  F+SG DD V+KP    E+LARV A+ +R  
Sbjct: 61  EILAHWRSAQINTPVIILTARGGWQDKVAGFNSGADDYVSKPFQIEELLARVGAVLKRSM 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           ++  +  ++   ++    +      G    L   E R+L Y M + G  ++K+ +   +Y
Sbjct: 121 LNRASELQSTQFKLNEHTQSIIFDDGNQQQLTNVEFRLLRYFMLHPGHILSKSVLTEHVY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +DE  + NV+E +I++LR+K+    G   + ++R  GY  
Sbjct: 181 -EYDEDKDSNVIEVYINRLRQKI----GSQHIQTRRGQGYVF 217


>gi|167618487|ref|ZP_02387118.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           Bt4]
 gi|257139729|ref|ZP_05587991.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           E264]
          Length = 232

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           VLI+D   ++    +   ++G+++    +        ++ + D++ ++  L       L+
Sbjct: 9   VLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPD--GDGLD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R  S++P+I +S     +  +   D+G DD + KP    E+LAR+ A  RR    
Sbjct: 67  VIRELRGWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 126

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   + G + V    R     GEV  L   E R+L  L+ + G+ +   Q+   ++
Sbjct: 127 GAAESPVVKFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRNVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G        + +  +++ LR+KL  +      + ++  +GY +
Sbjct: 187 GPTHVE-SHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRL 228


>gi|148998276|ref|ZP_01825745.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP11-BS70]
 gi|149010780|ref|ZP_01832151.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP19-BS75]
 gi|168485715|ref|ZP_02710223.1| VncR, response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|168576498|ref|ZP_02722372.1| VncR, response regulator [Streptococcus pneumoniae MLV-016]
 gi|307067219|ref|YP_003876185.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307126802|ref|YP_003878833.1| VncR, response regulator [Streptococcus pneumoniae 670-6B]
 gi|147755919|gb|EDK62963.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP11-BS70]
 gi|147765261|gb|EDK72190.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP19-BS75]
 gi|183571082|gb|EDT91610.1| VncR, response regulator [Streptococcus pneumoniae CDC1087-00]
 gi|183577727|gb|EDT98255.1| VncR, response regulator [Streptococcus pneumoniae MLV-016]
 gi|301793794|emb|CBW36185.1| two-component system, response regulator [Streptococcus pneumoniae
           INV104]
 gi|306408756|gb|ADM84183.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306483864|gb|ADM90733.1| VncR, response regulator [Streptococcus pneumoniae 670-6B]
          Length = 218

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGY--ETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+  P+  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKDTKVDFESYSASIAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLD----LDCILTVRNVGYKLE 216


>gi|313158368|gb|EFR57767.1| putative sensory transduction protein RegX3 [Alistipes sp. HGB5]
          Length = 226

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 98/226 (43%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  ++   S E    +    R  +  ++  +        
Sbjct: 6   ILVVDDEESLCEILQFNLEVEGYEVDTAYSAEQALGMH-PERYSLILLDVMM--GEMSGF 62

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           ++ R +RA  +   VP+I  +   +   T+   + G DD + KP   RE+LARV ++ RR
Sbjct: 63  KMARQLRAQPETAAVPIIFCTAKDTEDDTVAGLNIGADDYIAKPFSVREVLARVRSVLRR 122

Query: 119 LKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +        + +    +   V G    L ++E  IL  L++NRG+  ++ +I  
Sbjct: 123 TAPQEGQSRAIAFEGLHMDLVRKICTVDGTPLALTKKEFEILALLLSNRGRIFSREEILH 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            ++   +  V +  ++ +I++LR+K+      D + ++   GY  +
Sbjct: 183 QVW-SDEVIVLDRTIDVNITRLRRKIGVYG--DHIVTRLGYGYGFE 225


>gi|311747539|ref|ZP_07721324.1| DNA-binding response regulator ArlR [Algoriphagus sp. PR1]
 gi|126575520|gb|EAZ79830.1| DNA-binding response regulator ArlR [Algoriphagus sp. PR1]
          Length = 227

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60
            +L++D   + +       D G+  E  N+L   +    S   D   ++  L  G G  +
Sbjct: 3   ILLVEDNPELTENISNYLADQGMLCESANTLFDAQDKILSYGYDCIILDLMLPDGNGLTL 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL +  +   ++ ++ IS   SL   L   D G DD + KP H  E+LAR+ AIYRR K
Sbjct: 63  LELIKSRKM--EISILIISAKGSLDDKLSGLDLGADDYLAKPFHLAELLARLKAIYRRTK 120

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +      I + +      V  ++  L ++E  +L + + N+ + V K  I   ++G
Sbjct: 121 MQGFDEVVYNEITIINSQLQVLVNNQLLDLTKKEYDLLLFFLTNKDRVVGKNAIAHHLWG 180

Query: 180 LF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + D+    + V  H+  LRKK+    G D + +   LGY  D
Sbjct: 181 DYTDDLSNFDFVYQHVKNLRKKISAAGGRDYIRTVYGLGYKFD 223


>gi|158320237|ref|YP_001512744.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140436|gb|ABW18748.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 224

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 103/220 (46%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++    A    +  ++   ++ +  E L       V  I + ++       
Sbjct: 4   ILVIEDDKNLRRLMEAFLKRENYNV--LSAKDGLEALNVLDSFHVDLIISDIMMPHMDGY 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E    +R  +  VP++ ++   +++     F  G DD + KPI+  E+L RVAA+ RR  
Sbjct: 62  EFTEQLRKSNINVPILMVTAKETIEDKKRGFSVGTDDYMVKPINLDEMLLRVAALLRRSN 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + N  R   G + +  +      +GE   LP++E  +L  L+++  +   + Q+   I+G
Sbjct: 122 IVNEHRMVIGEVALDYNTLTVSKKGESIVLPKKEFYLLFKLLSHPKQIFTRQQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + D   +E  V+ HI +LR+K  +   F+ + + R LGY 
Sbjct: 182 M-DAETDERTVDVHIKRLREKFGDFSEFEII-TVRGLGYK 219


>gi|296187493|ref|ZP_06855888.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|296048015|gb|EFG87454.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 225

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +++     F  +  ++  + + +  + L       +  I   ++       
Sbjct: 5   LLIVEDDAGIRNLIAMYFRKEDFNI--YEAEDGNQALDIFKLNKIDLIILDIMIPYINGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++   IR  S VP+I ++     Q  L  FD G D  V KP   + ++A+  A+  R   
Sbjct: 63  KVCECIRKISNVPIIMLTAKTEEQDILQGFDEGTDAYVTKPFSPKVLVAKANALLNRVDN 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L  ++N      + +  +  +  V      L  +E  +L++L+ N+G  ++K  I   +
Sbjct: 123 KLNANDNIFSKDGLIIDFNSGEVSVDNSKIVLTHKEYDLLKFLIQNKGIILSKDIILDKV 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +G +D   +   +++HI +LR+KL N      + + +  GY  D
Sbjct: 183 WG-YDYFGDPRTIDTHIRRLRQKLGNN--HKLIITVKGRGYKFD 223


>gi|170759580|ref|YP_001788664.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406569|gb|ACA54980.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 9/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  ++   S   EE L     E    I   ++       
Sbjct: 5   ILIVDDDKTIVEFLQIFLIKEGYEVKF--SYNGEEALNKIENEKFDLILMDIMMPKIDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  +IIR  +   +I ++   + Q  +  F SG DD + KP    E+  R++AI RR  V
Sbjct: 63  EAIKIIRKLTNTLIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILRRSNV 122

Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                     +   + +               L  +E  IL  L  N+G+    ++++  
Sbjct: 123 REFEDDKYIIKIKDLELNLKEHTLYKGKGEITLTPKEFDILCLLARNKGRVFPSSELYER 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
           ++G  +    +N + +HI  LR+KL + +     + +   +GY I+
Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIE 227


>gi|167577808|ref|ZP_02370682.1| response regulator [Burkholderia thailandensis TXDOH]
 gi|167615936|ref|ZP_02384571.1| response regulator [Burkholderia thailandensis Bt4]
          Length = 229

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++I+D A +           G  ++   +      L ++   D   ++  L   G   L 
Sbjct: 4   LVIEDDAGIAANLYDYLESAGYEVDAAANGPAGLQLAATQPWDAILLDLSLP--GMDGLT 61

Query: 63  LPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L R +R       P++ ++   +L   L  F  G DD + KP   +E+ AR+ A+ +R +
Sbjct: 62  LCRKLREEIRRDTPVLMLTARDTLDDKLAGFVHGADDYLVKPFSLKEVAARLGALIKRYR 121

Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +A      +R+       E  G    +P +   +L  LM    + +   ++ + I+
Sbjct: 122 GQVTQAALCRADVRLDLQTLTVERAGRPVKMPPKCLHLLRILMQTPNRVIGHAELEAEIW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D   + + + +H+  LR+ L  +   D +++   LGY +
Sbjct: 182 G--DALPDSDTLRAHVYTLRRALTAQGEPDLIETVHGLGYRL 221


>gi|303233229|ref|ZP_07319901.1| putative response regulator ArlR [Atopobium vaginae PB189-T1-4]
 gi|302480619|gb|EFL43707.1| putative response regulator ArlR [Atopobium vaginae PB189-T1-4]
          Length = 223

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + D  + +  D     E            +S   D + ++  L   G+  +
Sbjct: 3   IIVIEDEKNLADAIVRILSDAHYHAEAVYDGTTGYRALASNLYDAAIVDRMLP--GKDGV 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L R +R ++  +P++ ++   S    ++  D+G DD + KP    E+LAR+ A+ RR  
Sbjct: 61  DLIRELRHNNNSMPILMLTARTSTTDKVEGLDAGADDYMTKPFEADELLARLRALTRRQG 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V  ++       +     D   +     L  +E  +L+ L+ +  + V+K  + + ++G
Sbjct: 121 DVMLDQVSFADFTLDLTTHDLTCKNHTVHLSGKEFEVLKMLLNSPSRVVSKQDLLTYVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   A  EN VE+++S LRKKL        + + R LGY ++
Sbjct: 181 VT-SATNENSVEAYVSFLRKKLMYVHSRVQITTLRMLGYRLE 221


>gi|269215547|ref|ZP_06159401.1| DNA-binding response regulator DltR [Slackia exigua ATCC 700122]
 gi|269131034|gb|EEZ62109.1| DNA-binding response regulator DltR [Slackia exigua ATCC 700122]
          Length = 230

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61
           ++++D   +      +  ++G   +  +  +      SS   D+  ++  L    G +V+
Sbjct: 4   LIVEDDVRLASALARILNENGYVTDVVHDGQDGYDYASSGIYDIVILDVMLPRKNGCRVV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E  R  RA    P++ ++    +   ++  DSG DD + KP    E+LA + A+ RR  +
Sbjct: 64  EELR--RARIDTPVLMLTARSEIPDKIEGLDSGADDYMTKPFSPAELLAHLRALTRRQGQ 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           V   R E G + +  D RD    G+   L  +E  +   L +N G+ V+K  + S ++G+
Sbjct: 122 VVFERIEAGDLSLNIDSRDLSCNGKSIALSFKEFELARILFSNPGQIVSKDTLISKVWGV 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              AV+ N VE+++S LRKK+R       +D+ R  GY ++
Sbjct: 182 ESTAVDNN-VEAYVSFLRKKIRFLGSGVSIDTIRKAGYRVN 221


>gi|294851972|ref|ZP_06792645.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|294820561|gb|EFG37560.1| two-component system protein [Brucella sp. NVSL 07-0026]
          Length = 210

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 18/213 (8%)

Query: 10  LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP-RIIR 68
           ++  GY+     DG         E   +L  +   D   ++  L       + +  R  R
Sbjct: 1   MIAAGYVVDSAYDG---------EEGHYLGDTEPYDAVVLDIGLPQ--MDGISVVERWRR 49

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           +   +P++ ++        +   D+G DD V KP H  E+LAR+ A+ RR    +++   
Sbjct: 50  SGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEFV 109

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            GP+ + +      + G    L   E R+L Y+M +  + V++T++   +Y   D   + 
Sbjct: 110 CGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQ-DFDRDS 168

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           N +E  + +LRKK+    G D +++ R +GY +
Sbjct: 169 NTIEVFVGRLRKKM----GVDLIETVRGMGYRM 197


>gi|265764893|ref|ZP_06093168.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|263254277|gb|EEZ25711.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
          Length = 228

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V D   A   ++G +     + +    L+         + + ++       
Sbjct: 4   ILIIEDEQRVADLLRAGLEENGYNC--LVAYDGAMGLRMFRANTFDLVISDIVLPKMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
           EL + IRA +  +P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  ELCKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRILLKRKL 121

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             +           + V    +  +  G    L  +E  +L Y++ N  K V++  I   
Sbjct: 122 AVVTDVEEELNYADLSVNLLDKSVKRAGRDIKLSPKEYNLLVYMIENAEKVVSRMDIADK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++         N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 182 VWNTH-FDTGTNFIDVYINYLRKKIDRDFDTKLIHTKTGMGFIL 224


>gi|260773697|ref|ZP_05882612.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260610658|gb|EEX35862.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 219

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 98/222 (44%), Gaps = 12/222 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + DG +      G       ++   +  Q   + D+  ++  L       +
Sbjct: 5   LLLVEDDKNLADGLLVSLEQAGYDCLHAETIAAVD--QYWEKADLVILDRQLPD--GDSI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                 +A  ++P+I ++   +++  +   D+G +D + KP    E+ AR+ A  R    
Sbjct: 61  SHLAEWKALKEIPVILLTALVTVKDKVTGLDAGGNDYLTKPFAEAELFARIRAQLRSPDG 120

Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +N   +  T  + +    R+     +   L R E  +L +L +N G+   + ++   ++
Sbjct: 121 EDNDDSKVVTPNLVIDKATREVFFNQQCITLTRTEFDLLLFLASNLGRVFTRDELLDHVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 181 G-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 217


>gi|242239495|ref|YP_002987676.1| DNA-binding transcriptional regulator PhoP [Dickeya dadantii
           Ech703]
 gi|242131552|gb|ACS85854.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 223

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  L++        + G  ++     +  ++       D++ ++  L    E   
Sbjct: 3   ILVVEDNVLLRHHLTVQMNELGHQVDAAADAKEADYFLHEHAPDIAIVDLGLPV--EDGT 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            L R  RA  + +P++ ++   S Q  +   ++G DD V KP H  E++AR+ A+ RR  
Sbjct: 61  SLIRRWRARQEKLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVMARIQALMRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +++      P  V    R+  V G    L   E  I+E L+ N GK V+K  +   +Y 
Sbjct: 121 GLASQVISLPPFEVDLSRRELMVHGAPVKLTAFEYTIIETLIRNIGKVVSKESLMLQLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              E  E + ++  + +LRKKL+     + + + R  GY  D
Sbjct: 180 PDAELRESHTIDVLMGRLRKKLQAANTNEVITTVRGQGYRFD 221


>gi|229028377|ref|ZP_04184501.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732925|gb|EEL83783.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 223

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 81/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++  +        
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPN--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E  PL   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYDEKIPLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     + +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYK 219


>gi|213691891|ref|YP_002322477.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523352|gb|ACJ52099.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 221

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   + +        DG S+   ++      L+     D+  ++  +        
Sbjct: 4   ILMIDDDRPILELVKNGLEKDGHSVT-IHTSAAHVPLEGLNGYDLIILDIMMPD--MDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR+    P++ ++     +        G DD + KP    E+ ARV A  RR + 
Sbjct: 61  TYCGKIRSLVDCPILFLTAKTMERDITSGLGLGADDYLTKPFRIAELRARVHAHLRREQR 120

Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +       I++    ++  V     PL + E  I EYL  NRG+  +K QI+ A++  
Sbjct: 121 ERHVSLTFDRIKIDLSAKELLVDNIPVPLTKSEYLICEYLAGNRGQVFSKKQIYEAVFPF 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +    + + + +HI  +R K     G  P+ +   +GY  +
Sbjct: 181 YGY-GDGSTISTHIKNIRSKFEEA-GVQPIVTVWGIGYKWE 219


>gi|126698400|ref|YP_001087297.1| two-component response regulator [Clostridium difficile 630]
 gi|254974439|ref|ZP_05270911.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091831|ref|ZP_05321309.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255099933|ref|ZP_05328910.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255305822|ref|ZP_05349994.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255313566|ref|ZP_05355149.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255516250|ref|ZP_05383926.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649348|ref|ZP_05396250.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306519438|ref|ZP_07405785.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115249837|emb|CAJ67654.1| Two-component response regulator [Clostridium difficile]
          Length = 230

 Score =  208 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++IDD   +          +   +E        + L   +++D   +   ++  G    E
Sbjct: 5   LIIDDDKDLCILLKKSISIE--QIEANYCHSGRDGLVELSKQDYQLVVLDVMMPGMDGFE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
               IR +S +P++ ++      + +    +G DD + KP    E  ARV ++ RR    
Sbjct: 63  TMEQIRKYSSIPILMLTSKSDNYSKVHGLRAGADDYLTKPFEITEFTARVLSLIRRYTRF 122

Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           N       +     + +  D       GE   LP +E  +L Y   ++GK + K QI+ A
Sbjct: 123 NPKNEEPQQLSFKGLLIDLDQHTVTTNGEPMLLPPKEFGVLLYCARHQGKILTKQQIYEA 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++G      + N + + IS+LRKK+  +      + + + +GY  +
Sbjct: 183 VWGEPYVYDDSN-IMAIISRLRKKIELDPSSPIYLQTIKGIGYQFN 227


>gi|169632976|ref|YP_001706712.1| putative two-component response regulator [Acinetobacter baumannii
           SDF]
 gi|169151768|emb|CAP00583.1| putative two-component response regulator [Acinetobacter baumannii]
          Length = 220

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60
            +L +D     +   +    DG  ++     ++          D   ++  L    GEKV
Sbjct: 3   ILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQYDYDCILLDPGLPQLAGEKV 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L   R       VP+I I+   S+   ++  D G +D + KP    E+ AR+    R+  
Sbjct: 63  LTTIRH--KQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRTQLRKQT 120

Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +S     T G +++ +  +     G+   L  +E +IL  LM +    + + Q+  A+Y 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            + E +E N +E  I +LRKK+    G   + + R LGY +
Sbjct: 180 AWGEEIESNAIEVFIYQLRKKI----GSSSIKTIRGLGYRM 216


>gi|313632439|gb|EFR99462.1| response regulator SaeR [Listeria seeligeri FSL N1-067]
          Length = 229

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   + D        +G  +   N+ E    L  S   D+  ++  +        
Sbjct: 4   ILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIMMP--KMDGH 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L   I+      P + +S     +  L     G DD ++KP   RE++ RV  I RR K
Sbjct: 62  TLVMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRRTK 121

Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            S+     + G + +    R   V  E   L  +E  +L  L +   +  +K+++   ++
Sbjct: 122 RSSEPETLKHGSLFLDKSKRLVLVNQEELELTIKEFDLLWLLASENKRVFSKSELLERVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221
           G ++   + N +  HI  LR+KL+        + +   LGY  +
Sbjct: 182 G-YEYDGDANTINVHIHHLREKLQXXDEKVIFIKTVWGLGYKFE 224


>gi|313498672|gb|ADR60038.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 230

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 13/230 (5%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +L+DD   + +        +G       + E  E L  S    V  ++  L   G 
Sbjct: 1   MIPVLLVDDDRELTEMLSLYLAREGFQATAAGTGEEGEPLALSGHFQVVVLDVMLP--GI 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +E+ R +RA SQVP++ ++        +   + G DD V KP    E++AR+ AI RR
Sbjct: 59  SGIEVLRRVRARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRR 118

Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           ++       ++     +G ++++   R+         L   E  +LE L    G+ ++K 
Sbjct: 119 VQPQLMGEAITPEHVRSGALKMWPGRREAHWGDATLELTGSEFSLLEALARQAGQLISKQ 178

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +     G      +   ++ H+S +R KL     G   + S R +GY +
Sbjct: 179 DLSLNALGRPLTRYDRR-IDVHVSSIRHKLGPRADGSSWIQSVRGMGYML 227


>gi|299537808|ref|ZP_07051097.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298726787|gb|EFI67373.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +       +   S+   +SL     L  + + D+  ++  L        
Sbjct: 6   ILIVEDDLDIMEVLSLTLANANYSILKASSLSSGWHLAVTQQPDLILLDVNLPD--GTGF 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + IR  S V +I ++    ++  L+ F+ G DD + KP   +E+LAR+ A  +R   
Sbjct: 64  ELAKSIRDVSDVIIIFVTVNHLIEQKLEGFEVGADDYMTKPFIPKELLARIQAHLKRRNP 123

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           S  +N      + +  D ++    G++  L  +E+ +L +L+ +  + ++  Q+   ++G
Sbjct: 124 SKKSNIVHIDNLSIHLDEKNVYKDGQLLNLFTKEKLLLFFLIEHANQVISVDQLIDHVWG 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            +D   +   V  HIS LR+K+ +       + + R  GY  
Sbjct: 184 -YDGVPDLKTVSVHISTLRRKIEDIPSKPKWIQTVRGFGYQF 224


>gi|262204089|ref|YP_003275297.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087436|gb|ACY23404.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 220

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +           G ++E     E    +  S   D+  ++  L        
Sbjct: 4   ILIAEDDVQIASFVGKGLRAAGYTVEHVADGETALLMGRSPEIDMILLDIGLPA--MDGF 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            + + +R      P++ ++   S+  T+   + G +D + KP    E+LARV        
Sbjct: 62  SVLQQLRGEGVSTPVVVLTARDSVTDTVAGLEGGANDYMTKPFQFAELLARVRLRLHHDA 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S     TG +R+    R  +V  +   L  RE  +LE  + +  + +++ QI   +
Sbjct: 122 PAAGSETSLATGDLRLDLRSRRVQVGSDTIDLTAREFALLEVFLRHPDQVLSREQILGHV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +G +D     NVV+ ++  LR K+    G   +++ R +GY +
Sbjct: 182 WG-YDFDPASNVVDVYVRALRTKI----GAQRLETVRGMGYRL 219


>gi|171320020|ref|ZP_02909092.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171094747|gb|EDT39789.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 221

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +     +     G +++          L    R D+  ++A L   G    
Sbjct: 3   ILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLP--GLDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR  
Sbjct: 61  AVLRNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N+    G + +    R  E+ G+   L R+E  +LE L +   +  +K ++ + ++ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLF- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F      N VE +++++R+KL+       + + R +GY I
Sbjct: 180 SFGNEPSANAVEQYVTRVRRKLQ--GSSVEIRTARGMGYQI 218


>gi|182418144|ref|ZP_02949444.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237666136|ref|ZP_04526123.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377962|gb|EDT75502.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237658226|gb|EEP55779.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 226

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 100/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +      G  G +++  +  E   W       DV  ++  L       +
Sbjct: 3   LLVVEDEKTLANIIKKGLGKYGYAVDVASDGEEALWYYDINEYDVIILDLNLP--KIDGI 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ + IR   S++ ++ +S    ++  +   D G +D + KP    E+ AR+ ++ RR  
Sbjct: 61  EVLKQIRQKDSEIKILILSARTQIEDRVLGLDEGANDYLVKPFDFLELEARIRSLIRRKF 120

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  N     G I + +      + G++  + ++E  IL YL+ N+   V+  ++   I+ 
Sbjct: 121 IQENSMLSCGSIFIDTSKNLVYINGDLLSVTKKEYAILNYLLYNKNTVVSSEKLIEHIW- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D  V+   N ++ H+  LRKK+      + + + R  GY ++
Sbjct: 180 --DSEVDLFSNTLKYHMHSLRKKIAEYSEKEIIKTVRGCGYIVE 221


>gi|148976493|ref|ZP_01813189.1| osmolarity response regulator [Vibrionales bacterium SWAT-3]
 gi|145964069|gb|EDK29326.1| osmolarity response regulator [Vibrionales bacterium SWAT-3]
          Length = 239

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQV 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSTEESVVEFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKSLVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRLVEEDPSKPRYIQTVWGLGYVF 232


>gi|119471563|ref|ZP_01613977.1| putative transcriptional regulatory protein RstA [Alteromonadales
           bacterium TW-7]
 gi|119445506|gb|EAW26792.1| putative transcriptional regulatory protein RstA [Alteromonadales
           bacterium TW-7]
          Length = 234

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +         + G +    +  +       +   ++  ++  L   G+  +
Sbjct: 7   ILLVEDDASLAQWVAEYLTEQGYTTHVCHRGDEVVSQVKTLNPNIVLLDIMLP--GQDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R+    P+I ++        +   + G  D + KP+  R +LAR+ A  R+   
Sbjct: 65  SVCRELRSFYNAPIIMLTARDEEMDEVIGLEVGASDYIMKPVRPRALLARIKAALRQSSE 124

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N      +    G + + ++ R+ +  G+   +   E  +L YL +N G+ V++  +F 
Sbjct: 125 PNKLEKVESTISVGSLNINTESRNVKFNGQDVNISSAEYLLLHYLASNAGQVVSRDAVFK 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           A  G  +    +  V+  IS LRKK   +    + + +    GY +
Sbjct: 185 ATKGR-EYDGLDRSVDVLISALRKKFSDDPQNPEKIKTIWGRGYLL 229


>gi|16080525|ref|NP_391352.1| two-component response regulator YvcQ [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221311421|ref|ZP_03593268.1| hypothetical protein Bsubs1_18801 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315748|ref|ZP_03597553.1| hypothetical protein BsubsN3_18717 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320663|ref|ZP_03601957.1| hypothetical protein BsubsJ_18680 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324948|ref|ZP_03606242.1| hypothetical protein BsubsS_18836 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321313022|ref|YP_004205309.1| two-component response regulator YvcQ [Bacillus subtilis BSn5]
 gi|81814897|sp|O06978|YVCP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yvcP
 gi|1945655|emb|CAB08062.1| hypothetical protein [Bacillus subtilis]
 gi|2635985|emb|CAB15477.1| two-component response regulator [YvcQ] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|320019296|gb|ADV94282.1| two-component response regulator (YvcQ) [Bacillus subtilis BSn5]
          Length = 237

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 11/230 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +           G  ++    L   +   +  + D+  ++  L        
Sbjct: 4   ILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFF--DGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
              R IR  S  P+I IS        +   ++G DD + KP H   ++A++ ++ RR   
Sbjct: 62  YWCRQIRTISNAPIIFISARTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYG 121

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +   E G + ++ D  + E         ++E ++L   +    K V++ ++
Sbjct: 122 EYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQKEFQLLSIFVREHKKIVSRDEL 181

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
             A++   D  V++N +  ++++LR+KL N    D + + R  GY    N
Sbjct: 182 LEALWDDVD-FVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVN 230


>gi|325663729|ref|ZP_08152133.1| hypothetical protein HMPREF0490_02874 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470222|gb|EGC73455.1| hypothetical protein HMPREF0490_02874 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 231

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   + +        +G ++      +    +  S   D+  I+  +       + 
Sbjct: 5   LVCDDDKEIVEAIEIYLRQEGYNVLKAYDGQEAIKVLDSTEVDLLIIDVMMP--KLDGIR 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
               IR  + +P+I +S        +   + G DD + KP +  E++ARV +  RR    
Sbjct: 63  ATLKIREKNSLPIIILSAKSEDADKILGLNVGADDYLTKPFNPLELVARVKSQLRRYTQL 122

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  ++    G +++  + ++  V G+V  L   E  IL  L+ N+GK  +  QI+
Sbjct: 123 GSTVIEKKSSVFTVGGLKIDDELKEVTVDGDVIRLTPIEYNILLLLVKNQGKVFSINQIY 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            +I+   D    +N V  HI  +R+K+  N      +     +GY I+
Sbjct: 183 ESIWNE-DAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIE 229


>gi|169343719|ref|ZP_02864718.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298279|gb|EDS80369.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 232

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 16/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++     F  +G  +   +       +       +  ++  L        
Sbjct: 5   ILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIEIFKEFNPTLVILDLMLPD--ISGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +   +   +I ++    +   +   + G DD + KP   RE +ARV    RR + 
Sbjct: 63  DVCRELNKLNAN-IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKEK 121

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +    GPI++    R   +  E   L  +E  +L Y + N    +++ Q
Sbjct: 122 FLKESNKSTVKDEVIIGPIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G  +   +   V+ H+ +LR+KL N    + +++   LGY  
Sbjct: 182 ILDGVWG-DEYFGDFRTVDVHVRRLRQKLNN---EEIIETIFGLGYMF 225


>gi|156976220|ref|YP_001447126.1| positive response regulator for pho regulon [Vibrio harveyi ATCC
           BAA-1116]
 gi|156527814|gb|ABU72899.1| hypothetical protein VIBHAR_04992 [Vibrio harveyi ATCC BAA-1116]
          Length = 256

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  +    ++   +        D+  ++  L       L
Sbjct: 25  ILLVEDDDDLAELVQIHLKFQGHQVLRATNIAEAKAQYQQQSFDLLILDRGLPD--GDGL 82

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R      P++ ++        +D  ++GVDD + KP    E  ARV  + RR+ 
Sbjct: 83  DVCHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVS 142

Query: 121 VS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +           +  + GP+R+  +     +  +   L   E  +L++L    G+  +K
Sbjct: 143 HTTEVQTDKNLVEDAMDFGPLRIIPELHQVSLHDKDVTLTATEFTLLQFLATRPGRVYSK 202

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++   ++   + +   + V S I++LR KL  +      + +   +GY  
Sbjct: 203 DELLDHVWNT-NHSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGYKF 252


>gi|75759827|ref|ZP_00739903.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492685|gb|EAO55825.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 227

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++  +        
Sbjct: 8   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVMMPS--MDGW 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 66  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 126 -DGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 184 ETDIEYRTIDSHIRNIRDKLRKKGFPIEDYLETVYKVGYK 223


>gi|330501332|ref|YP_004378201.1| osmolarity response regulator [Pseudomonas mendocina NK-01]
 gi|328915618|gb|AEB56449.1| osmolarity response regulator [Pseudomonas mendocina NK-01]
          Length = 245

 Score =  208 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 101/229 (44%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++      F + G  +    ++E  + L +    ++  ++  L   GE  L
Sbjct: 14  ILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLMLP--GEDGL 71

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
              R +R  ++Q+P+I ++      + +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 72  SACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQA 131

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     G   +    R+ +   EV  L   E  +L+ L+ +  + + + +
Sbjct: 132 PVVPGAPGAEDESVSFGDYELSLATRELKKGEEVHMLTTGEFAVLKALVQHAREPLTRDK 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G   +A+E   ++  IS+LR+ +  +      + +   +GY  
Sbjct: 192 LMNLARGREWDALE-RSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 239


>gi|254512408|ref|ZP_05124475.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium
           KLH11]
 gi|221536119|gb|EEE39107.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium
           KLH11]
          Length = 238

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D          +     +++  + +   EE +  +   D   I   L        
Sbjct: 3   ILLVEDDPTTSKSIELMLTHANLNV--YATDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A  + P++ +S     ++ +  F  G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRQLRIARVETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +   TG + V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHSQSVIHTGQVAVNLDAKTVEVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             DE  E  +++  I KLRKKL N   G + +++    GY +
Sbjct: 181 GMDE-PELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVL 221


>gi|186475768|ref|YP_001857238.1| osmolarity response regulator [Burkholderia phymatum STM815]
 gi|184192227|gb|ACC70192.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 244

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 87/210 (41%), Gaps = 19/210 (9%)

Query: 27  EGFNSLEFEEW-----LQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISD 80
           +GFN    E       L    R D+  ++  L   GE  L + R +R ++ + P+I ++ 
Sbjct: 32  QGFNVYVAENAPSMNKLWVRERFDLLVLDLMLP--GEDGLSICRRLRGSNDRTPIIMLTA 89

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---------NNRAETGPI 131
                  +   + G DD + KP + RE++AR+ A+ RR   S         +   E G  
Sbjct: 90  KGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQSPSELPGAPSETSEVFEFGEF 149

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    R     G+  PL   E  +L+    +  + +++ ++     G  +  V +  ++
Sbjct: 150 ALNLATRTLTKAGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGR-EYEVFDRSLD 208

Query: 192 SHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             IS+LRK +  +      + +   LGY  
Sbjct: 209 VQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238


>gi|78778516|ref|YP_396628.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712015|gb|ABB49192.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 260

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 88/231 (38%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++D         G  ++        + L      D+  ++  L       L
Sbjct: 5   ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     S +P++ I+    L+  +  F+SG DD + KP    E+  R+ A+ RR
Sbjct: 63  TLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRR 122

Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
              +             GP+ +  +  +         L   E  ++  L+   G+ V+  
Sbjct: 123 TNRAQLNSSNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELIHCLLQRHGQTVSPA 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
            I   ++G ++   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 183 LILKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPIYIKTVYGAGYCLE 232


>gi|325962147|ref|YP_004240053.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468234|gb|ADX71919.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 246

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +         G S+           +    R DV  ++  +   G   +E
Sbjct: 25  LVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKMAKDFRPDVLVLDVMIP--GFDGVE 82

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +   IRA   + P + ++   ++Q  +    +G DD V KP    E+L R+  + +R  V
Sbjct: 83  VLGRIRAFAPEFPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSGV 142

Query: 122 SN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +         G + +  D R+    GE   L   +  +L YLM N  + ++K QI   ++
Sbjct: 143 AAMDTAELVVGDLVLNLDTREVARAGEALQLTATQFELLRYLMENPKRVISKAQILDRVW 202

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +D   + N+VE +IS LRKK+ + +    + + R  GY I
Sbjct: 203 N-YDFGGQANIVELYISYLRKKV-DAVHPPMIHTVRGAGYVI 242


>gi|319764865|ref|YP_004128802.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330827070|ref|YP_004390373.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317119426|gb|ADV01915.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329312442|gb|AEB86857.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 224

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 107/223 (47%), Gaps = 8/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ +D  ++ DG +      G  ++   S  E +  L ++   D+  ++  L       
Sbjct: 3   ILIAEDDQVLADGLLRTLRGSGAVVDHVASGSEADAALLTNNEFDLLILDLGLPR--LHG 60

Query: 61  LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118
           LE+ + +R   S +P++ ++    ++  +   D G DD + KP    E+ ARV A+ RR 
Sbjct: 61  LEVLKRLRGRGSALPVLILTAADGIEERVKGLDLGADDYMAKPFALSELEARVRALTRRG 120

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  ++   + GP+     GR   + G++  L  RE  +LE L+   G+ V+K Q+   + 
Sbjct: 121 MGGTSATIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             + E V  N +E +I +LRKK+    G   + + R LGY ++
Sbjct: 181 -EWGEEVSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220


>gi|260768252|ref|ZP_05877186.1| two-component system response regulator QseB [Vibrio furnissii CIP
           102972]
 gi|260616282|gb|EEX41467.1| two-component system response regulator QseB [Vibrio furnissii CIP
           102972]
          Length = 214

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 9/217 (4%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D A + +  IA     G   E         +  +S   DV  ++  L       L + +
Sbjct: 2   EDDARLGEQIIASLEQTGWVPELSQDGIDALYRATSEEWDVIVLDLGLP--KLDGLTVLK 59

Query: 66  IIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SN 123
            IR  +   P++ +S   +L   ++  ++G DD + KP    E++AR+ A  RR    ++
Sbjct: 60  GIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRASGNAS 119

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183
              + G + + +       +G+   L   E +++ Y M N  K +++T++   IY   D 
Sbjct: 120 PVMQIGDLSLDTRSSKVMWRGQAINLTALEYKVVAYFMHNPEKVISRTELVEHIYKQ-DF 178

Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             + N +E  I ++RKK+      + + + R LGY +
Sbjct: 179 DRDSNTIEVFIGRIRKKI----APNIIKTVRGLGYQL 211


>gi|239905419|ref|YP_002952158.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239795283|dbj|BAH74272.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 229

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59
           + ++IDD   ++          G  +    +  E  + L+   R  V  ++  +   G+ 
Sbjct: 4   VVLIIDDDLKLRKMLGDYLAGYGYEVRELPDGGEAAKALEQL-RPSVVILDIMMP--GKD 60

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            LE+   IR  S VP+I ++        +   + G DD + KP + RE+LAR+ A  RR 
Sbjct: 61  GLEVLADIRRASTVPVIMLTAKGDPMDRVVGLEMGADDYLPKPFNLRELLARIRAALRRH 120

Query: 120 KVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R ++G I +        +    + L   E  +L  LM N    +++  + + 
Sbjct: 121 APEAPNKGRLKSGGISLDLSLETLTIGTTRYELSTVEFNVLSALMRNPDIPLSRDALLNL 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            +G  D  V +  V+ HISKLR  L+   G +  + +    GY  
Sbjct: 181 GWGE-DAVVSDRSVDVHISKLRSILKQHHGHEKRIKTVWGFGYKF 224


>gi|15807405|ref|NP_296136.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460233|gb|AAF11960.1|AE002072_2 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 236

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          D   +    +L   +    +    +  ++  L       L
Sbjct: 22  ILIVEDDPHLGPLLRDYLSAD-YQVHHAPTLRDAQAWLGTHSPQLVLLDLNLPD--GDGL 78

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +R +S  P++ +S    +Q  +   ++G DD + KP    E+ AR+ A+ RR   
Sbjct: 79  DLVQALRQYSSTPVLVLSARTGVQERVAGLNAGADDYLTKPFAMPELDARITALLRRTAA 138

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G   + +      V  +   L   E RILE +M    +  ++  I S +YG  
Sbjct: 139 GTG-VNLGNTALSTSSLLLTVNDKNVNLTEHEARILELMMRTPERVFSRADIESHLYGW- 196

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E    N VE  IS+LRKKL +      + + R +GY +
Sbjct: 197 -ETPNSNSVEVRISQLRKKLESAGSDLRIRTIRNVGYVL 234


>gi|17988319|ref|NP_540953.1| transcriptional regulatory protein chvI [Brucella melitensis bv. 1
           str. 16M]
 gi|23502938|ref|NP_699065.1| DNA-binding response regulator BvrR [Brucella suis 1330]
 gi|62290933|ref|YP_222726.1| DNA-binding response regulator BvrR [Brucella abortus bv. 1 str.
           9-941]
 gi|82700844|ref|YP_415418.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|148560408|ref|YP_001259894.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC
           25840]
 gi|161620004|ref|YP_001593891.1| transcriptional regulatory protein chvI [Brucella canis ATCC 23365]
 gi|163844109|ref|YP_001628513.1| transcriptional regulatory protein chvI [Brucella suis ATCC 23445]
 gi|189025147|ref|YP_001935915.1| transcriptional regulator [Brucella abortus S19]
 gi|225626471|ref|ZP_03784510.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo]
 gi|225853520|ref|YP_002733753.1| transcriptional regulator ChvI [Brucella melitensis ATCC 23457]
 gi|237816441|ref|ZP_04595434.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308
           A]
 gi|254690226|ref|ZP_05153480.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 6
           str. 870]
 gi|254694714|ref|ZP_05156542.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 3
           str. Tulya]
 gi|254696341|ref|ZP_05158169.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700722|ref|ZP_05162550.1| Transcriptional regulatory protein chvI [Brucella suis bv. 5 str.
           513]
 gi|254705094|ref|ZP_05166922.1| Transcriptional regulatory protein chvI [Brucella suis bv. 3 str.
           686]
 gi|254707389|ref|ZP_05169217.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis
           M163/99/10]
 gi|254709068|ref|ZP_05170879.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis
           B2/94]
 gi|254718148|ref|ZP_05179959.1| Transcriptional regulatory protein chvI [Brucella sp. 83/13]
 gi|254731257|ref|ZP_05189835.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 4
           str. 292]
 gi|256030593|ref|ZP_05444207.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis
           M292/94/1]
 gi|256045695|ref|ZP_05448573.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256158589|ref|ZP_05456479.1| Transcriptional regulatory protein chvI [Brucella ceti M490/95/1]
 gi|256254000|ref|ZP_05459536.1| Transcriptional regulatory protein chvI [Brucella ceti B1/94]
 gi|256258479|ref|ZP_05464015.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 9
           str. C68]
 gi|256262996|ref|ZP_05465528.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260169499|ref|ZP_05756310.1| Transcriptional regulatory protein chvI [Brucella sp. F5/99]
 gi|260546196|ref|ZP_05821936.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260562995|ref|ZP_05833481.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260567438|ref|ZP_05837908.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260755765|ref|ZP_05868113.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260758988|ref|ZP_05871336.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260760712|ref|ZP_05873055.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884789|ref|ZP_05896403.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68]
 gi|261215041|ref|ZP_05929322.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|261221140|ref|ZP_05935421.1| regulatory protein BvrR [Brucella ceti B1/94]
 gi|261314875|ref|ZP_05954072.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10]
 gi|261316567|ref|ZP_05955764.1| regulatory protein BvrR [Brucella pinnipedialis B2/94]
 gi|261751232|ref|ZP_05994941.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513]
 gi|261755797|ref|ZP_05999506.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686]
 gi|261759025|ref|ZP_06002734.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265983104|ref|ZP_06095839.1| regulatory protein BvrR [Brucella sp. 83/13]
 gi|265987640|ref|ZP_06100197.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1]
 gi|265992115|ref|ZP_06104672.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1]
 gi|265997100|ref|ZP_06109657.1| regulatory protein BvrR [Brucella ceti M490/95/1]
 gi|294851319|ref|ZP_06791992.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297247318|ref|ZP_06931036.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306837662|ref|ZP_07470531.1| two component transcriptional regulator [Brucella sp. NF 2653]
 gi|306842796|ref|ZP_07475437.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306843509|ref|ZP_07476110.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|17984093|gb|AAL53217.1| transcriptional regulatory protein chvi [Brucella melitensis bv. 1
           str. 16M]
 gi|23348972|gb|AAN30980.1| DNA-binding response regulator BvrR, putative [Brucella suis 1330]
 gi|62197065|gb|AAX75365.1| BvrR, DNA-binding response regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82616945|emb|CAJ12048.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|148371665|gb|ABQ61644.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC
           25840]
 gi|161336815|gb|ABX63120.1| Transcriptional regulatory protein chvI [Brucella canis ATCC 23365]
 gi|163674832|gb|ABY38943.1| Transcriptional regulatory protein chvI [Brucella suis ATCC 23445]
 gi|189020719|gb|ACD73441.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|225618128|gb|EEH15171.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo]
 gi|225641885|gb|ACO01799.1| Transcriptional regulatory protein chvI [Brucella melitensis ATCC
           23457]
 gi|237788508|gb|EEP62723.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308
           A]
 gi|260096303|gb|EEW80179.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260153011|gb|EEW88103.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260156956|gb|EEW92036.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669306|gb|EEX56246.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671144|gb|EEX57965.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675873|gb|EEX62694.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260874317|gb|EEX81386.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68]
 gi|260916648|gb|EEX83509.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260919724|gb|EEX86377.1| regulatory protein BvrR [Brucella ceti B1/94]
 gi|261295790|gb|EEX99286.1| regulatory protein BvrR [Brucella pinnipedialis B2/94]
 gi|261303901|gb|EEY07398.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10]
 gi|261739009|gb|EEY27005.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261740985|gb|EEY28911.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513]
 gi|261745550|gb|EEY33476.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686]
 gi|262551568|gb|EEZ07558.1| regulatory protein BvrR [Brucella ceti M490/95/1]
 gi|263003181|gb|EEZ15474.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092870|gb|EEZ17045.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264659837|gb|EEZ30098.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1]
 gi|264661696|gb|EEZ31957.1| regulatory protein BvrR [Brucella sp. 83/13]
 gi|294819908|gb|EFG36907.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297174487|gb|EFH33834.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306276200|gb|EFM57900.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|306287069|gb|EFM58577.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306407220|gb|EFM63430.1| two component transcriptional regulator [Brucella sp. NF 2653]
 gi|326410088|gb|ADZ67153.1| Transcriptional regulatory protein [Brucella melitensis M28]
 gi|326539805|gb|ADZ88020.1| Transcriptional regulatory protein chvI [Brucella melitensis M5-90]
          Length = 239

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +  +       +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPR--MDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR+  
Sbjct: 68  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +             E G + +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 128 RDGTAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236


>gi|148240578|ref|YP_001225965.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849117|emb|CAK24668.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 265

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 90/232 (38%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++         G  ++  +     + L      D+  ++  L       L
Sbjct: 5   ILLIEDDRDMRELVSGHLEHSGFDVQSADDGIKGQALALQYNPDLILLDLMLPKV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     S +P++ ++     +  +  F+SG DD + KP    E+  R+ A+ RR
Sbjct: 63  TLCQRLRRDERTSAIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRR 122

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                       +     GP+ +  +  +     +   L   E  +L  L+   G+ VA 
Sbjct: 123 SDRAPVGTSGNHHEILSYGPLTLVPERFEAIWFDKPVRLTHLEFELLHCLLQRHGQTVAP 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + I   ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 183 SLILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 233


>gi|325263000|ref|ZP_08129736.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           D5]
 gi|324032094|gb|EGB93373.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           D5]
          Length = 240

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 92/227 (40%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   VK+             E   +        +S   D+  ++  L       +
Sbjct: 9   ILVVEDDMPVKNLITTTLESQDYKYETAATGNQAVMAAASGNPDIILMDLGLPD--MDGI 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ R IR  S  P+I IS     +  ++  D+G DD + KP    E+LAR+ +  RR++ 
Sbjct: 67  EVIRKIRTWSVAPVIVISARSDDRDKVEALDAGADDYLTKPFSVEELLARLRSTLRRIQY 126

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  +++  + G + +        V  +   L   E  +L  L  N GK +    I 
Sbjct: 127 LMRTKDQNSSVFKDGDLVIDYGAGTVFVGEKEIHLMPLEYSLLCLLAQNVGKVLTYQFIL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++ +     + + +  +++ LRKK+  +K     + +   +GY +
Sbjct: 187 DKVW-VNAIESDMSSLRVYMASLRKKIEKDKSNPRYIQTHIGVGYRM 232


>gi|297539008|ref|YP_003674777.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297258355|gb|ADI30200.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 223

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  ++ +        +  +++        E   ++   D+  ++  L  K  + L
Sbjct: 3   LLLVEDDVMIGESINEALNGENYAVDWARDGRSAELALANGVYDLILLDLGLPKK--QGL 60

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           ++    R    + P++ I+   S+   +   D+G DD + KP    E+ ARV A+ RR  
Sbjct: 61  QVLSEYRQRGGMLPVLIITARDSMADKVGGLDAGADDYLVKPFDLDELFARVRALLRRHT 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +      G + +     +  + G++  L  RE  +L  L+   G+  +  ++   +Y 
Sbjct: 121 GRAQPVITYGKVTLNPAIHEVHLDGQLLSLSGREFALLLSLLTPPGRVRSLAELEEKLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +D  V  N +E  I +LRKKL    G + + + R +GY +
Sbjct: 180 SWDHEVASNTLEVLIHRLRKKL----GTNFIQNIRGMGYKV 216


>gi|261879166|ref|ZP_06005593.1| response regulator PhoB [Prevotella bergensis DSM 17361]
 gi|270334265|gb|EFA45051.1| response regulator PhoB [Prevotella bergensis DSM 17361]
          Length = 231

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 13/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +        +G  +E  NS E E         D+  ++  +   G    
Sbjct: 10  ILVVDDEDDLCEILKFNLETEGYHVEKANSAE-EALEMDLPAFDLLLLDVMM--GGMSGF 66

Query: 62  ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            + + ++A+     +P+I ++   +   T+  F+ G DD ++KP   RE+L RV A+ RR
Sbjct: 67  AMAQKLKANPATANIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRVRAVIRR 126

Query: 119 L----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                           + +  D +   V GE     + E  +L +L+  +G+  ++ ++ 
Sbjct: 127 TDDRDHEQPTVLRYQGLEMNLDKKTVTVDGEPVAFTKTEFELLRFLLDEKGRVFSRQELI 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             I+   D  V +  V+ +I++LRKK+        + ++   GY  D
Sbjct: 187 DRIWPK-DVLVLDRTVDVNITRLRKKIGRF--SKCIVTRLGFGYYFD 230


>gi|58039285|ref|YP_191249.1| two component response regulator ChvI [Gluconobacter oxydans 621H]
 gi|58001699|gb|AAW60593.1| Two component response regulator ChvI [Gluconobacter oxydans 621H]
          Length = 256

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 14/230 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           +  L+DD   +          +G ++  +   + E  LQ      VS     +       
Sbjct: 26  IIALVDDDRNILASVQMTLEAEGFTVHTYT--DGESALQGITSRPVSLAVLDVKMPRMDG 83

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +EL + +RA S +P+I ++        L     G DD + KP   R ++ R+ A+ RR  
Sbjct: 84  MELLQRLRARSNLPVIFLTSKDEELDQLMGLRLGADDYITKPFSQRLLIERIRALLRRQD 143

Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            S   A            G + +          G+   L   E  +++ L    G   ++
Sbjct: 144 ASRAEATGVAAVGSAIVRGQLSLDETRHQCLWGGQDIALTVTEFLLVKALALRPGMVKSR 203

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
            Q+  A YG  +  V++  ++SHI ++RKK R     F+ +++   +GY 
Sbjct: 204 DQLIDAAYG-DNIYVDDRTIDSHIKRVRKKFRQVDDEFNQIETLYGIGYR 252


>gi|150389691|ref|YP_001319740.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949553|gb|ABR48081.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 95/220 (43%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A       A+      +   F + +  + L    R+    I   L+       
Sbjct: 4   ILIVEDDANTTKLICAVLKRGNYNC--FTARDGLDALSMMERQYFDLIILDLMMPRMDGY 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + +R      P++ I+    ++     F  G DD + KP   +E+L R+ A+ RR +
Sbjct: 62  QLCKELRDVGENTPILMITAQQEIKDKHRGFLVGTDDYMTKPFDEQEMLFRIKALLRRAQ 121

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           + N  +   G   +  +        +   LP++E  +L  LM+   K   + Q+   I+G
Sbjct: 122 IVNEHKLTIGDTTLDYNTLTVTHGEDTITLPQKEFYVLFKLMSYPDKIFTRMQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             D   + + +  H+ +LR+KL+N   F+ + + R LGY 
Sbjct: 182 P-DTETDGHTLNVHMGRLREKLKNNPDFE-IVTVRGLGYK 219


>gi|310658325|ref|YP_003936046.1| transcription response regulator-like protein [Clostridium
           sticklandii DSM 519]
 gi|308825103|emb|CBH21141.1| transcription response regulator-like protein [Clostridium
           sticklandii]
          Length = 230

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +        +G S    N       L   +  D+   +  +       L
Sbjct: 5   ILIIEDEENISEIVAKYLQKEGYSTLIANDGIEGLALFRDSNPDLVISDVMMPT--IDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S VP+I ++        L  F++G DD V KP   +E++ RV  + +R   
Sbjct: 63  EVLREIRLISDVPVIMLTAKQEEVDRLKGFENGADDYVTKPFSPKELVRRVMVMLKRTYK 122

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    +    G +++  + +          +  +E +I+     N  + +++ Q+    +
Sbjct: 123 TIENKQVLIEGELKLDLNKQKLYKNEVEIDITSKEFQIIYAFFKNPRQILSREQLIELAF 182

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              D    +  ++ HI K+R K+         + +K   GY  
Sbjct: 183 -SNDFEGFDRTIDVHIKKIRHKIEEDTKNPKYLKTKYGAGYIF 224


>gi|229120236|ref|ZP_04249487.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663277|gb|EEL18866.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 223

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++  +        
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPN--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYNEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     + +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYK 219


>gi|220918235|ref|YP_002493539.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956089|gb|ACL66473.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 238

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           + ++D   +           G ++      +         + DV  ++  L  K    LE
Sbjct: 12  LFVEDDERLAALTTRYLESHGHAVTWVADGQLGLAEALKGQHDVVILDLMLPRK--SGLE 69

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +RA   VP+I ++        +   ++G DD + KP   RE+LAR+ A+ RR + S
Sbjct: 70  VCRELRARLPVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRRGRGS 129

Query: 123 ----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                     G + +          G    L   E  +L  L    G+ + + Q+     
Sbjct: 130 LGPPREVIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLTREQLLDLTK 189

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           G  DEA +   +++HIS+LR KL +       + + R  GY +
Sbjct: 190 GSADEAFD-RSIDAHISRLRHKLGDDPRRPALLKTVRGAGYVL 231


>gi|23016749|ref|ZP_00056502.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 242

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 88/238 (36%), Gaps = 27/238 (11%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +           G ++      +       +   D+  ++  L   GE  L 
Sbjct: 5   LIVDDDPEICALLTQFLTGQGYTVATAGDGDTMRQALVNEAADLVILDLMLP--GEDGLS 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           L R +RA + +P+I ++   S    +   + G DD + KP   RE+LAR+ A+ RR    
Sbjct: 63  LCRHLRATTSLPIIMLTAMGSETDRVVGLEMGADDYLAKPFSTRELLARIRAVLRRAGQM 122

Query: 122 -------------SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKR 167
                             E     +    R      G +  +   E  +L   + +  + 
Sbjct: 123 MQSAPREPTPADEPVEILEFSGWHLDVSRRRLTSPDGVLAEITSGEFDLLLAFLRHPHQV 182

Query: 168 VAKTQIFS----AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +++ Q+       + G FD       ++  + +LR+K+  +    +   + R  GY +
Sbjct: 183 LSRDQLLDLARGRVSGPFD-----RTIDVQVGRLRRKMETDPKTPELFKTVRGGGYVL 235


>gi|331268490|ref|YP_004394982.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
 gi|329125040|gb|AEB74985.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
          Length = 228

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 9/222 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   +  G       +  ++    +L        +   D+  ++  L        + 
Sbjct: 2   LVEDDMALAIGMDYTLKQENFNVIKAKNLREAR-ENFNEEMDLVLLDVMLPD--GTGYDF 58

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
              IR  S +P+I I+        +   + G DD + KPI  +E+LAR+ A+ RR   +N
Sbjct: 59  CSEIRRKSDIPIIFITACDEEANIVLGLEIGGDDYITKPIRIKEMLARINAVLRRKSTAN 118

Query: 124 NRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               T     G I V           E   L   E ++L   M N+   V +  +   I+
Sbjct: 119 KEQSTKTIVSGDIVVDILKIKVYKNNEEIILTPAEYKLLVIFMKNKNNVVTRGTLLEKIW 178

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYS 219
            +  E V+ N V  ++ +LR+K+ +       +++ R  GY 
Sbjct: 179 DVDGEFVDSNTVNVYVKRLREKIEDDSKNPMYIETVRGAGYR 220


>gi|304398989|ref|ZP_07380858.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304353449|gb|EFM17827.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 231

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 13/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G  +   +  E    L  ++  D+  ++  +  K    +
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLIDNS-IDLLLLDVMMPKK--NGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  DTLKELRQQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           S  +         E   +R+    ++         L   E  +L  L  + G+ V++  +
Sbjct: 121 SEQQQHDNSSPTLEVDCLRLNPGRQEASFDDVTLDLTGTEFTLLYLLAQHLGQVVSREHL 180

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
              + G      +   ++ HIS LR+KL   + G     + R  GY
Sbjct: 181 SQEVLGKRLTPFD-RAIDMHISNLRRKLPERRDGHPWFKTLRGRGY 225


>gi|299529796|ref|ZP_07043229.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298722210|gb|EFI63134.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 224

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 103/220 (46%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D ALV  G  A     G  ++        +    S+  DV  ++  L    E  L 
Sbjct: 4   LLVEDNALVASGVKAGLQLQGFGVDVVGCASQADAALKSSHFDVCVLDLGLPD--EDGLH 61

Query: 63  LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           L  R  R   ++P++ ++   ++   ++   +G DD + KP    E+ AR+ A+ RR   
Sbjct: 62  LLARWRRQGLELPVLVLTARDAVDQRIEGLQTGADDYLVKPFDLHELAARLHALLRRAAG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            + +    G ++V         +G +  L RRE  +L  L+ + G+ ++  Q+  ++YG 
Sbjct: 122 RTVDWIVLGDVKVDLAAGQAIREGSIVDLSRREWALLRALLQSPGRVLSLEQLRDSLYG- 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +   VE N V  H+  LR+KL    G D V++ R +G+ +
Sbjct: 181 YSLDVESNAVNVHVHHLRRKL----GSDMVETVRGVGFRL 216


>gi|239817228|ref|YP_002946138.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239803805|gb|ACS20872.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 230

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 8/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+++D   +           G     F   +       +   +++ ++  L       +
Sbjct: 4   IVIVEDELDIASVVQDYLRHAGYETTHFADGQSALDHLIATPPELTLLDIMLPR--LDGI 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R  R H+  P+I ++        L   + G DD V KP   RE++ARV A+ RR + 
Sbjct: 62  EVLRRAREHTSHPIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLRRTEP 121

Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              R +       + +        ++G    L RRE  +L+ L  + G+  ++ ++    
Sbjct: 122 PAERGQARQGMSGLVLDDVHWRASLEGTPLNLTRREFGLLQVLSRHPGRIFSRARLLELA 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLG 217
           Y      V E  ++SH+  LR+KL       D + S   +G
Sbjct: 182 YDDT-MDVTERAIDSHVKNLRRKLGAVTPSHDWIRSVYGVG 221


>gi|218437686|ref|YP_002376015.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218170414|gb|ACK69147.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 227

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 89/221 (40%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D               G  ++G    E  +WL +    D+  ++  L       +
Sbjct: 3   ILLVEDDPTQLKPLHGALSKVGHIVDGVEDGETAQWLMTQRDYDLLILDWMLPAV--SGI 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L +  R      P++ ++   ++   +   D G DD + KP    E+LARV A+ RR  
Sbjct: 61  SLCQQYRQLGKNAPVLFLTAKDAILDKVSALDVGADDYIVKPFSLLELLARVRALGRRSP 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               +    G + +       + Q     L  RE ++LEY++ +  + +   QI  A++ 
Sbjct: 121 HWQGDILSLGDLELHLHSLTVKRQNLEVQLSARECQLLEYMLRHPRQILTHDQIEQALW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +    +   +   + +LR++L+     D + +    GY +
Sbjct: 180 EWTTQPDSKAITMLVHRLRQRLQMVQAQDWLQTVYGAGYRL 220


>gi|223934896|ref|ZP_03626815.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223896349|gb|EEF62791.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 254

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD   +           G  +   ++    E  + +  E  +A+   ++  G    
Sbjct: 22  LLVIDDDRKLCRLIKDYLEPMGYEIALAHT--GPEGAEKAVSETFAAVILDVMLPGMDGF 79

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + IR  S VP++ ++        +   + G DD + K    RE+LAR+ A+ RR   
Sbjct: 80  EVLKQIRRASNVPVLMLTARGDESDRIVGLEIGADDYLPKTFSTRELLARLRAVTRRSNQ 139

Query: 122 SNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           +    ET          +RV    R   +  +   L   E  +L  L   +G+  ++ Q+
Sbjct: 140 TTKATETPDAQEIVIQDLRVNEGSRTAVLGDKPLDLTPVEYDLLASLARAKGRIKSREQL 199

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
              I    +  V +  ++ HIS LRKKL  +      + + R  GY +
Sbjct: 200 LDEI-AERNYDVFDRSIDVHISALRKKLGDDPKSPRFIRTVRTAGYML 246


>gi|159040344|ref|YP_001539597.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157919179|gb|ABW00607.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 229

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 9/223 (4%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +L++D +++         D G  +           + +    D+  ++  L       
Sbjct: 3   LILLVEDDSIITAALSRALTDAGHVVRAVGQAAEALRVLTGEPPDLVLLDLGLPD--IDG 60

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +  R+IR+ S+VP++ I+   S    +   +SG DD V KP     ILAR++A+ RR +
Sbjct: 61  TDALRMIRSISEVPVVVITARRSETDIIHLLNSGADDYVTKPFSGEHILARISAVLRRYR 120

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              ++        GP+ +    R   + G+   L RRE  +L YL    G+ V++ ++ +
Sbjct: 121 SGTDQEGPGTITVGPLVIGRKERRVTMDGKPLKLTRREYDVLTYLAERAGQVVSRRELMT 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLG 217
            ++       EE  ++ HIS LR+KL         + + R +G
Sbjct: 181 EVWRQA-RIGEEQTIDVHISWLRRKLGETAARPRLLHTVRGVG 222


>gi|126700939|ref|YP_001089836.1| two-component response regulator [Clostridium difficile 630]
 gi|254976918|ref|ZP_05273390.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094303|ref|ZP_05323781.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102486|ref|ZP_05331463.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308391|ref|ZP_05352562.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255316058|ref|ZP_05357641.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518715|ref|ZP_05386391.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651836|ref|ZP_05398738.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684864|ref|YP_003216149.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688522|ref|YP_003219656.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521624|ref|ZP_07407971.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115252376|emb|CAJ70217.1| Two-component response regulator [Clostridium difficile]
 gi|260211027|emb|CBA66352.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214539|emb|CBE07065.1| two-component response regulator [Clostridium difficile R20291]
          Length = 219

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 92/219 (42%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      +   DG  ++  + +E           ++  ++  +        
Sbjct: 4   ILVVDDELDMLKLIENVLKRDGHEVKVISDVEKA-MNMDFNYFNLIILDVMMP--KMDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120
           E+ + IR     P++ ++        +     G DD + KP    E+ AR+ A  RR  +
Sbjct: 61  EVCKTIRNKVDCPILFLTAKNMESDIMYGLGIGADDYITKPFGVGELRARITAHLRRESR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N      ++    G++  + G+     + E  I E+L  N+G+  +K +I+ ++YG 
Sbjct: 121 EKKNLLTISNVQFNFLGKEVSIDGKKINFTKSEYLICEFLAKNKGQVFSKERIYESVYG- 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           FD   + + +  HI  +R KL+    +  +++   +GY 
Sbjct: 180 FDGESDISTITEHIKNIRSKLKQYDIY-TIETVWGIGYK 217


>gi|296449610|ref|ZP_06891386.1| response regulator [Clostridium difficile NAP08]
 gi|296878070|ref|ZP_06902085.1| response regulator [Clostridium difficile NAP07]
 gi|296261546|gb|EFH08365.1| response regulator [Clostridium difficile NAP08]
 gi|296430823|gb|EFH16655.1| response regulator [Clostridium difficile NAP07]
          Length = 238

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 18/230 (7%)

Query: 3   VLIDDRA----LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++IDD      L+K        +      G       + L   +++D   +   ++  G 
Sbjct: 13  LIIDDDKDLCILLKKSISIEHIEANYCHSG------RDGLVELSKQDYQLVVLDVMMPGM 66

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E    IR +S +P++ ++      + +    +G DD + KP    E  ARV ++ RR
Sbjct: 67  DGFETMEQIRKYSSIPILMLTSKNDNYSKVHGLRAGADDYLTKPFEIAEFTARVLSLIRR 126

Query: 119 LKV------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     + +     + +  D       GE   LP +E  +L Y   ++GK + K Q
Sbjct: 127 YTRFNPKNEESQQLSFKGLLIDLDQHTVTTNGETMLLPPKEFGVLLYCARHQGKILTKQQ 186

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+ A++G      + N + + IS+LRKK+  +      + + + +GY  +
Sbjct: 187 IYEAVWGEPYVYDDSN-IMAIISRLRKKIELDPSSPIYLQTIKGIGYQFN 235


>gi|228919441|ref|ZP_04082806.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840228|gb|EEM85504.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 223

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++  +        
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIEQKEFDIILLDVMMPS--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPIEDYLETVYKVGYK 219


>gi|317499180|ref|ZP_07957456.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|291560744|emb|CBL39544.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893539|gb|EFV15745.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 235

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +   +    + +  E +     ++V  +   ++      L
Sbjct: 6   ILVVDDDKEIVGAIKKRLEMEDYEI--ITAYDGLEAMDILMEQEVQLLIIDVMMPKMDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR    +P+I +S        +     G DD ++KP    E++ARV +  RR   
Sbjct: 64  SATMKIRESKNIPIIILSAKTEESDKILGLSMGADDYISKPFRPDELVARVKSQLRRYMQ 123

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + +  +   G + +   G+   V GE   L   E +I+  LM N G+  +  +
Sbjct: 124 FGGMNAAESNKEQIINGGLILDMKGKRMMVDGEPVKLTATEYKIVSLLMNNLGRVFSADE 183

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++     A E N V  HI ++R+K+  +      +     +GY I+
Sbjct: 184 IYERVWNEEAYATE-NTVMVHIRRIREKIEIDAKNPRYLKVVWGIGYKIE 232


>gi|254476121|ref|ZP_05089507.1| DNA-binding response regulator ChvI [Ruegeria sp. R11]
 gi|214030364|gb|EEB71199.1| DNA-binding response regulator ChvI [Ruegeria sp. R11]
          Length = 233

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 95/231 (41%), Gaps = 14/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +N  +      +    D++ ++  +       +
Sbjct: 4   IALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDIKMPR--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L + +R  +Q+P+I ++        +     G DD V KP   R ++ R+ A+ RR + 
Sbjct: 62  DLLQRLRQKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                      +   E G +R+         +G+   L   E  +L+ L    G   ++ 
Sbjct: 122 ISGDAVATTTESKVMERGNLRMDPLRHSVSWKGQDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221
           Q+    Y      V++  ++SHI +LRKK+R+    F  +++   +GY  +
Sbjct: 182 QLMDVAYD-DQVYVDDRTIDSHIKRLRKKMRSADPEFAAIETLYGIGYRYN 231


>gi|167758316|ref|ZP_02430443.1| hypothetical protein CLOSCI_00655 [Clostridium scindens ATCC 35704]
 gi|167664213|gb|EDS08343.1| hypothetical protein CLOSCI_00655 [Clostridium scindens ATCC 35704]
          Length = 225

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 6/219 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + IDD   +          +G  +    S   +    +     +  ++  +   G+   
Sbjct: 10  ILAIDDEKDILMLIKNALAKEGYDVT-LLSDPLKIGEVNLNAYQLILLDVMMP--GQDGF 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R IR     P++ ++        ++    G DD + KP    E+ ARVAA  RR   
Sbjct: 67  SLCRDIRDQVDCPILFLTAKVQEADIMEGLGIGGDDYITKPFGIGELRARVAAHLRREGR 126

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              N    G ++     +    +G+   L + E  I EYL  N G+  +K +I+  ++G 
Sbjct: 127 EKKNAVSVGDVQFLLQAKQAVYEGKALELTKSEYAICEYLALNHGQVFSKDRIYEHVFG- 185

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +D   + + +  HI  +R K   K GF P+++   +GY 
Sbjct: 186 YDGEGDSSAITEHIKNIRGKC-QKAGFAPIETVWGIGYR 223


>gi|307545687|ref|YP_003898166.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307217711|emb|CBV42981.1| two component transcriptional regulator, winged helix family
           [Halomonas elongata DSM 2581]
          Length = 241

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 100/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   ++D         G         E    L ++ R D+  ++  L   G+   
Sbjct: 8   LVVVDDDPEIRDLLADYLTRHGYRALMAEDAEALRALLATERPDLLVVDLMLP--GDDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R  S+VP+I ++  P     +   + G DD + KP + RE+LARV A+ RR + 
Sbjct: 66  AICREVRRDSEVPIIMLTASPDETDRILGLELGADDYLGKPFNPRELLARVKAVLRRCRP 125

Query: 122 SNNRAETGPIRV--FSDGRDPEVQGEVFP-------LPRRERRILEYLMANRGKRVAKTQ 172
             + A +G  R+  F D R   V  E+         L   +  +L+  + +  + +++  
Sbjct: 126 RGDSAGSGMARIVAFGDWRLDRVTRELIDERGMRSALSGADFSLLQVFLEHAEQVLSREA 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           +F    G     ++   ++ H+ +LR++L  +      + + R  GY +
Sbjct: 186 LFDLTRGRPAPPLD-RSIDVHVCRLRQRLGEDAQHSQLIRTVRGTGYVL 233


>gi|291562324|emb|CBL41140.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 225

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +  +        S++     E    L    R D+  ++  L  K    +
Sbjct: 3   LLVIEDERALCETIVRSLRRLAYSVDFCYDGETALELLGVERYDLVLLDLNLPKK--DGM 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + R +R    +  ++ +S    ++  +   D+G +D + KP H  E+ AR+ ++  R+ 
Sbjct: 61  TVLRTLRQTDRETRVLILSARSEVEDKVQGLDAGANDYLAKPFHLAELEARIRSLTLRQF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +     G +   +  R   V G+   L R+E  ILEYLM ++G+ V++ ++   ++ 
Sbjct: 121 TQQDVLLSCGGLTFDTRSRTATVNGQTLTLTRKETGILEYLMVHQGRPVSQEELMDHVW- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
             D +V+   N +  HIS LRKKLR  LG+DP+ ++   GY
Sbjct: 180 --DNSVDSFSNSIRVHISALRKKLRAVLGYDPIRNRIGEGY 218


>gi|218282706|ref|ZP_03488913.1| hypothetical protein EUBIFOR_01499 [Eubacterium biforme DSM 3989]
 gi|218216407|gb|EEC89945.1| hypothetical protein EUBIFOR_01499 [Eubacterium biforme DSM 3989]
          Length = 237

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +        +        + +       S   D+  ++  L       L
Sbjct: 6   ILVIEDDVAVGNLITTTLEMENYQFRLAKTAKQGIMNVLSYNPDIMLLDLGLPD--MDGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +R+ S +P+I +S     Q  +   D G DD + KP    E+LAR+    RRL  
Sbjct: 64  EVIKKVRSWSNIPIIVVSARSEDQDKVKALDLGADDYLTKPFSVDELLARLRVTIRRLNN 123

Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           S       +  E G + +          G    L   E ++L  L  N  K +    I  
Sbjct: 124 SQTISVNESVYENGDLTINYAQGCVYENGHEIHLTPIEYKLLCVLAKNTDKVLTHNYIMQ 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++G   +  E   +   ++ LRKK+  +      + +   +GY +
Sbjct: 184 EVWGSV-QGTETPSLRVFMATLRKKIEPDTSNPKYIQTHVGVGYRM 228


>gi|333031401|ref|ZP_08459462.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332741998|gb|EGJ72480.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 228

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 107/228 (46%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       ++G+ ++   +   EE LQ  + E  S I   ++  G    
Sbjct: 5   ILIVDDEPDICEILTFNLVNEGLIVD--YAYSAEEALQKLSPEH-SLILLDIMMDGMSGY 61

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R+    +P+I ++   S    L  F  G DD ++KP   +E++ARV AI +R K
Sbjct: 62  KMAEKLRSEGNEIPIIFLTAKRSENDMLTGFSVGADDYISKPFSIKEVIARVKAILKRAK 121

Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +     S    +   + +  + ++  +  E+ PL + E  IL  L +N  +  ++  I  
Sbjct: 122 LKKQNESPTSIDFEGLSINLESKEVIIDEEMIPLTKTEFEILALLTSNPSRLFSREDIIG 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            ++      + E  V+ HI++LRKK+++   F  + S+   GY  + N
Sbjct: 182 VVWSETPY-ITERTVDVHITRLRKKMKDYGQF--ITSRSGYGYRFNVN 226


>gi|308187698|ref|YP_003931829.1| transcriptional regulator [Pantoea vagans C9-1]
 gi|308058208|gb|ADO10380.1| Probable transcriptional regulator [Pantoea vagans C9-1]
          Length = 226

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +          +G   +   +         S       ++  L       +
Sbjct: 3   ILLVDDDVELGTMLSQYLIAEGFDAQLVLTGSAGIQGALSGEFTAMILDIMLPD--MSGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R +R +S++P+I ++        +   + G DD + KP + RE++AR+ A+ RR + 
Sbjct: 61  DVLRQVRQNSRIPVIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFEE 120

Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +      G + +    R  E QG+ F L   E  +L+ L+    + V+K ++  
Sbjct: 121 QVPQPDAKEPLRWGDLTLNPATRMSEWQGKTFDLTASEFNLLDLLLRAPDRVVSKDELSE 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
              G   EA +   V+ HIS +R+KL         +++ R +GY I
Sbjct: 181 KGLGRPREAYD-RSVDVHISNIRQKLSALTADSINIETVRSIGYRI 225


>gi|210622859|ref|ZP_03293382.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275]
 gi|210153964|gb|EEA84970.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275]
          Length = 233

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 17/232 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60
            ++IDD   +         D+G  +    + + EE ++ S    D+  ++  +       
Sbjct: 7   ILIIDDEKDLVKLLGKKIKDNGHEV--LVAFDGEEGIEKSKLNPDLILLDIMMP--KIDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ + IR +   P+I +S   S    +  F+ G DD + KP   RE+LA++ A  RR K
Sbjct: 63  FEVCQKIRDNVVCPIIFLSARQSETDKIRGFNLGGDDYITKPFGLRELLAKIEANLRREK 122

Query: 121 VSN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
            S          +   G + +    R  EV G+  PL + E  I+E L  N G+   K Q
Sbjct: 123 RSQYLNEENKRRKLYFGNLSLDIKDRVVEVCGKDIPLTKTEYEIVELLALNAGQVFTKEQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223
           I+  ++G +D+  +   V   I K+R+K       +  + +   +GY   WN
Sbjct: 183 IYEKVWG-YDKGGDNTTVVEMIKKIRRKFSTIDDTEQYISTVWGIGYK--WN 231


>gi|166032925|ref|ZP_02235754.1| hypothetical protein DORFOR_02646 [Dorea formicigenerans ATCC
           27755]
 gi|166027282|gb|EDR46039.1| hypothetical protein DORFOR_02646 [Dorea formicigenerans ATCC
           27755]
          Length = 270

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 16/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED---VSAIEAFLIGKGE 58
            +LI+D   ++         +   +  FN  +    +Q     D   ++ I+  L     
Sbjct: 45  IILIEDDKEIRGMINDYLSGE-FEVTAFN--DGMSAIQKITSYDEYALALIDLMLPD--I 99

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +E+ +IIR  S++P+I I+   +        + G DD V KP    E+ AR+ A  RR
Sbjct: 100 SGMEIIKIIRKVSKIPIIIITAKDNDIDKSLGLNLGADDYVVKPFSLIELTARIKANIRR 159

Query: 119 LK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
            +      +N+  +   I +       + +G    L   E +IL  L ++ G+  +K ++
Sbjct: 160 ARTYQALPNNSIIKIKDIEIDPHSHMVQRKGVTIDLTPIEFQILYILASHPGQAYSKERL 219

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221
           +  I+        ENV+ +HI++LR KL++        V +   +GY ++
Sbjct: 220 YELIWKEP-YFGNENVLNTHINRLRLKLKSNAEDSTAYVKTLWGIGYKME 268


>gi|30018772|ref|NP_830403.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218232832|ref|YP_002365383.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218895640|ref|YP_002444051.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228899271|ref|ZP_04063534.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228906332|ref|ZP_04070217.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228957004|ref|ZP_04118779.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228963678|ref|ZP_04124822.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229042443|ref|ZP_04190189.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229108192|ref|ZP_04237814.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126017|ref|ZP_04255040.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229143310|ref|ZP_04271741.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296501346|ref|YP_003663046.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29894313|gb|AAP07604.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218160789|gb|ACK60781.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218544181|gb|ACK96575.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228640117|gb|EEK96516.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228657442|gb|EEL13257.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228675208|gb|EEL30430.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228726897|gb|EEL78108.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228796026|gb|EEM43490.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228802635|gb|EEM49477.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228853355|gb|EEM98127.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228860302|gb|EEN04699.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|296322398|gb|ADH05326.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 80/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++  +        
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVMMPS--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPIEDYLETVYKVGYK 219


>gi|163938509|ref|YP_001643393.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229010010|ref|ZP_04167225.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229165524|ref|ZP_04293304.1| Two-component response regulator [Bacillus cereus AH621]
 gi|163860706|gb|ABY41765.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228617972|gb|EEK75017.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228751292|gb|EEM01103.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 223

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       +    E L+   ++D   I   ++       
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFC--MKATSGLEALELIEQKDFDIILLDVMMPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V GE   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYGERISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219
              +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 QTDIEYRTIDSHIRNIRDKLRKKEFPVEDYLETVYKVGYK 219


>gi|15900511|ref|NP_345115.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           TIGR4]
 gi|15902572|ref|NP_358122.1| VncR, response regulator [Streptococcus pneumoniae R6]
 gi|111657296|ref|ZP_01408060.1| hypothetical protein SpneT_02001494 [Streptococcus pneumoniae
           TIGR4]
 gi|116516514|ref|YP_816026.1| DNA-binding response regulator VncR [Streptococcus pneumoniae D39]
 gi|148983983|ref|ZP_01817302.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP3-BS71]
 gi|148988968|ref|ZP_01820368.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992289|ref|ZP_01822012.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP9-BS68]
 gi|149002281|ref|ZP_01827223.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP14-BS69]
 gi|149005712|ref|ZP_01829451.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP18-BS74]
 gi|168482836|ref|ZP_02707788.1| VncR, response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|168488288|ref|ZP_02712487.1| VncR, response regulator [Streptococcus pneumoniae SP195]
 gi|168490511|ref|ZP_02714654.1| VncR, response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|168492763|ref|ZP_02716906.1| VncR, response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|169833674|ref|YP_001694082.1| VncR, response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|182683534|ref|YP_001835281.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           CGSP14]
 gi|221231426|ref|YP_002510578.1| two-component system, response regulator [Streptococcus pneumoniae
           ATCC 700669]
 gi|225854136|ref|YP_002735648.1| VncR, response regulator [Streptococcus pneumoniae JJA]
 gi|225856303|ref|YP_002737814.1| VncR, response regulator [Streptococcus pneumoniae P1031]
 gi|225858438|ref|YP_002739948.1| VncR, response regulator [Streptococcus pneumoniae 70585]
 gi|237650128|ref|ZP_04524380.1| VncR, response regulator [Streptococcus pneumoniae CCRI 1974]
 gi|237821659|ref|ZP_04597504.1| VncR, response regulator [Streptococcus pneumoniae CCRI 1974M2]
 gi|303253928|ref|ZP_07340049.1| two-component system, response regulator [Streptococcus pneumoniae
           BS455]
 gi|303260094|ref|ZP_07346067.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP-BS293]
 gi|303261278|ref|ZP_07347226.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263943|ref|ZP_07349864.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS397]
 gi|303265934|ref|ZP_07351830.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS457]
 gi|303268316|ref|ZP_07354113.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS458]
 gi|4583523|gb|AAD25108.1|AF140356_1 VncR [Streptococcus pneumoniae]
 gi|5830544|emb|CAB54582.1| response regulator [Streptococcus pneumoniae]
 gi|14972078|gb|AAK74755.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           TIGR4]
 gi|15458102|gb|AAK99332.1| VncR, response regulator [Streptococcus pneumoniae R6]
 gi|116077090|gb|ABJ54810.1| DNA-binding response regulator VncR [Streptococcus pneumoniae D39]
 gi|147759596|gb|EDK66587.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP14-BS69]
 gi|147762652|gb|EDK69612.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP18-BS74]
 gi|147924130|gb|EDK75242.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP3-BS71]
 gi|147925465|gb|EDK76542.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928915|gb|EDK79927.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP9-BS68]
 gi|168996176|gb|ACA36788.1| VncR, response regulator [Streptococcus pneumoniae Hungary19A-6]
 gi|172043603|gb|EDT51649.1| VncR, response regulator [Streptococcus pneumoniae CDC1873-00]
 gi|182628868|gb|ACB89816.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           CGSP14]
 gi|183572926|gb|EDT93454.1| VncR, response regulator [Streptococcus pneumoniae SP195]
 gi|183574934|gb|EDT95462.1| VncR, response regulator [Streptococcus pneumoniae CDC0288-04]
 gi|183577048|gb|EDT97576.1| VncR, response regulator [Streptococcus pneumoniae CDC3059-06]
 gi|220673886|emb|CAR68392.1| two-component system, response regulator [Streptococcus pneumoniae
           ATCC 700669]
 gi|225720424|gb|ACO16278.1| VncR, response regulator [Streptococcus pneumoniae 70585]
 gi|225723575|gb|ACO19428.1| VncR, response regulator [Streptococcus pneumoniae JJA]
 gi|225725840|gb|ACO21692.1| VncR, response regulator [Streptococcus pneumoniae P1031]
 gi|301799650|emb|CBW32209.1| two-component system, response regulator [Streptococcus pneumoniae
           OXC141]
 gi|301801472|emb|CBW34164.1| two-component system, response regulator [Streptococcus pneumoniae
           INV200]
 gi|302599104|gb|EFL66129.1| two-component system, response regulator [Streptococcus pneumoniae
           BS455]
 gi|302637412|gb|EFL67899.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638789|gb|EFL69251.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP-BS293]
 gi|302642154|gb|EFL72504.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS458]
 gi|302644518|gb|EFL74769.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS457]
 gi|302646348|gb|EFL76574.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           BS397]
 gi|332074410|gb|EGI84886.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332076436|gb|EGI86899.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332077033|gb|EGI87495.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332202480|gb|EGJ16549.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332203763|gb|EGJ17830.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 218

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGY--ETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+  P+  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLD----LDCILTVRNVGYKLE 216


>gi|238059052|ref|ZP_04603761.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237880863|gb|EEP69691.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 231

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   ++   +    D G ++   ++           R D+  ++  L        
Sbjct: 4   LLLIEDDLTIRTPLVRALRDRGHAVAAASTAMDGLRDALDNRPDLVVLDLGLPD--LDGR 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL R++RA S VP+I  +        +   D+G DD V KP    ++ AR+ A+ RR   
Sbjct: 62  ELLRMLRAVSAVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARIRAVLRRGAA 121

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                +     G +RV    R   + G    L  RE  +L +L A  G+ V K ++ + +
Sbjct: 122 GAGAGDPALVVGGLRVDPRARQVTLDGVAVELTPREFDLLHHLAARPGEVVTKRELLTEV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           + +      +  V+ H+S LR+KL  N      + + R +G  ++
Sbjct: 182 WQIP-YGGADKTVDVHLSWLRRKLGENAQQPRYLHTVRGVGVRLE 225


>gi|229819268|ref|YP_002880794.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565181|gb|ACQ79032.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 233

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D    ++        DG  +E   +    E L +  R     +   L+  G    
Sbjct: 4   ILLVEDEESYREPLGYQLERDGFDVEAVAT--GPEALDAFDRSGADLVLLDLMLPGLSGT 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE----------ILAR 111
           E+ R +R    VP+I ++   S    +   + G DD V KP  +RE              
Sbjct: 62  EVCRELRRRGDVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSYRELLARVRAVLRRRGA 121

Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            A     L+  +     G +R+ +D  +  V GE+ P+P RE  +LE  + N  + + + 
Sbjct: 122 GADGGGHLEDDDAVLVAGRVRMDTDRHEVRVDGELVPVPLREFELLEMFLRNPDRVLTRG 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           Q+   I+G  +   +   ++ H+ +LR K+  +      + + R LGY +
Sbjct: 182 QLIDRIWG-SNYVGDTKTLDVHVKRLRAKIEADPSIPQMLVTVRGLGYKL 230


>gi|86360102|ref|YP_471991.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86284204|gb|ABC93264.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 228

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 93/224 (41%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD A +         ++G  +             +    D+  ++  +       +E
Sbjct: 5   LLIDDDAELTTLLQEYLVEEGYDVATDTDGRAAIAAAAGNTVDIIVLDIMMPR--MNGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + IR  SQVP++ ++        +   + G DD V KP    E+ AR+ AI RR    
Sbjct: 63  VLQRIRKLSQVPVLMLTARGDDVDRISGLNLGADDYVPKPCSPGELAARLRAILRRAGQP 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S +    G + + S  R  E +GE   L   E  +LE L  + G+ V+K  I    
Sbjct: 123 AAGASTDTITAGQLVIHSGSRSAEWRGEALELTGTEFGLLEVLARSAGQLVSKQDISKRA 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G      +   ++ HIS +R+KL   + G   + S R  GY +
Sbjct: 183 FGKPLTPFDRR-IDVHISSVRQKLGLREDGQSWIQSVRGQGYQL 225


>gi|24373664|ref|NP_717707.1| DNA-binding response regulator YgiX, putative [Shewanella
           oneidensis MR-1]
 gi|24348011|gb|AAN55151.1|AE015651_10 DNA-binding response regulator YgiX, putative [Shewanella
           oneidensis MR-1]
          Length = 219

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+  G        G+ ++  +S  + + L     E  SAI   L        
Sbjct: 3   IMLVEDNELLAQGICLSLAKMGMQVDHLSS--YHQALVGIKNETFSAIVLDLGLPDGNGK 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L +  R+    +P I ++      T L+  D G DD + KP   RE+ AR+ AI RR  
Sbjct: 61  DLLKAWRSQGVSIPTIVLTANTDFDTKLECLDVGADDYLGKPFDVRELAARIRAIVRRQF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +N    G + +  + R+   + +   L RRE ++L  L  + G+ + + Q+    YG
Sbjct: 121 GLDHNSLNIGALSIDLNTREVTFRDQNVSLSRREFQLLLELAQSAGRVLTRNQLEQLTYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223
              + V  N +E HI  LRKKL N    + + + R +GY++ + N
Sbjct: 181 W--DEVGSNSIEVHIHHLRKKLAN----ELIKTVRGIGYTLTEVN 219


>gi|229095233|ref|ZP_04226225.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228688092|gb|EEL41978.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 223

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 81/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L    + D+  ++  +        
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIEQKKFDIILLDVMMPN--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYK 219


>gi|149377595|ref|ZP_01895334.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
 gi|149358137|gb|EDM46620.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
          Length = 233

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VLI+D   +++ Y   F   G  +  +        +  +A  D++ I+  L  + E   
Sbjct: 5   IVLIEDEPAIRENYRDAFERRGYRVSAYGDRTSAFQVLRTALPDLAIIDVGLGDEPEGGF 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118
            L + +R+ S+  P+I ++   S   ++     G DD V K +    +LARV A+ RR  
Sbjct: 65  TLCQDLRSLSKTLPIIFLTARDSDIDSVHGLRLGADDYVTKDMSMDHLLARVTALLRRAD 124

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                LK  +     G + +  D    E  G+   L   E  +L  L+ + G   ++ Q+
Sbjct: 125 AWAEALKQPDEVVHRGRLALNVDRMTAEWNGQPIDLTVTEFWMLHSLVQHPGHVRSRDQL 184

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223
             A        +++N V SHI ++R+K L+    FD + +   +GY   WN
Sbjct: 185 MEAA----STVLDDNTVTSHIKRIRRKFLQIDDAFDGIHTAYGMGYR--WN 229


>gi|148241355|ref|YP_001226512.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849665|emb|CAK27159.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 260

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++         G  ++  +     + L      D+  ++  L       L
Sbjct: 5   ILLIEDDRDMRELVAGNLEHSGFDVQKADDGIKGQALALQYIPDLIVLDLMLPRV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     +Q+P++ ++     +  +  F+SG DD + KP    E+LARV A+ RR
Sbjct: 63  TLCQRLRRDDRTAQIPILMLTALAGTKDKVTGFNSGADDYLTKPFELEELLARVKALLRR 122

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +     GPI +  +  +     +   L   E  +L  L+   G+ VA + 
Sbjct: 123 SDRAPLSSKHSEILSFGPITLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVAPSL 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G ++   +   +  HI  LR KL  +      + +    GY ++
Sbjct: 183 ILKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231


>gi|146307499|ref|YP_001187964.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575700|gb|ABP85232.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 227

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +    +      G S++          L SS   D+  ++  L   G    
Sbjct: 3   ILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHYDLIVLDIMLP--GIDGY 60

Query: 62  ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           ++ + +R    S+VP++ ++   +L   L   ++G DD + KP    E++AR+ AI RR 
Sbjct: 61  QVCKRLREDGRSEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRRS 120

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           + S  R  +   +    D       G+   L     ++L  LM      V +  +  A++
Sbjct: 121 RGSRKRQLQVADLSYDLDTLHVSRAGQALKLNPLGLKLLAILMQRSPAVVRREALEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ L        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVLDKPFPTPLLHTIHGVGYRL 220


>gi|108801411|ref|YP_641608.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870564|ref|YP_940516.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108771830|gb|ABG10552.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696653|gb|ABL93726.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 233

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 9/208 (4%)

Query: 21  DDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLI 76
           + G+ L GF+   +++  E L+S+      AI   +       + +   +RA  + VP+ 
Sbjct: 24  ERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 83

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIR 132
            +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+   + GP+ 
Sbjct: 84  VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSSATFSSETIQVGPLE 143

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+ 
Sbjct: 144 VDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVDV 202

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I  LR+KL        + + R +G+ +
Sbjct: 203 FIGYLRRKLEAGGAPRLLHTVRGVGFVL 230


>gi|332297646|ref|YP_004439568.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332180749|gb|AEE16437.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 238

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D + + +      G +G+      S E       +   D+  ++  L   G    
Sbjct: 5   ILVIEDVSELAELVALYLGKEGMEAVTVESAEAAFDALETFSPDLVLLDLNLP--GMDGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E     R     P++ +S   + +  +     G D+ + KP   R ++ARV A+ RR++ 
Sbjct: 63  EFLHKFRKTHSTPVLIVSARDADEDIISGLGGGADEYITKPFSPRVLVARVRAMIRRVQD 122

Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           + + +          G   +          GE  PL  +E  IL +L+ N G+ +    I
Sbjct: 123 ATSESAAASEQVFCFGDFTLHLSSCVLTRSGERIPLSAKEYAILSFLVKNAGRPLTPAVI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +  ++   +   + + V  +I +LRKK+  +      +++   +GY  
Sbjct: 183 YDEVWK--NAYGDLSAVAVYIQRLRKKIEADPADPRFIETVFGMGYRF 228


>gi|326202666|ref|ZP_08192534.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987250|gb|EGD48078.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 223

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +      F++ +  + L    +E +  I + ++       
Sbjct: 5   ILVVEDDETLNKLMCIKLKQENFK--TFSAFDGAQALGILDQEYIDLIISDIMMPKIDGY 62

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + +R  S   P++ ++    L+     F +G DD + KPI+ +E++ RV A+ RR K
Sbjct: 63  ELTKELRDASYAQPILMVTAKDQLEDMEQGFRAGTDDYMIKPINLKEMILRVNALLRRSK 122

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           ++N  R   G   +        + G+ F +P +E  +L  L++N  K   + +I   I+G
Sbjct: 123 IANEKRLIVGKTVLDYSQMTIYIGGQEFEIPPKEFYLLFLLLSNPNKIFTRLEILDEIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + D  V+E  V+SHI KLR+K  N + F+ + + R LGY 
Sbjct: 183 M-DSEVDERTVDSHIKKLRRKFENCMDFEII-TIRGLGYK 220


>gi|222087224|ref|YP_002545759.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221724672|gb|ACM27828.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 219

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +             +++   +L     + S+ +  +  ++  L   G  + 
Sbjct: 3   ILLVEDDETIGSAVRDHIAATTHAVDWVKNLADATEVTSAVKYGLILLDLQLPD-GVGID 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L ++ R   + P+I ++    +   ++  +SG DD + KP +  E+ AR+ A+ RR   
Sbjct: 62  FLKKLRRKPDETPVIILTARDQISDRIEGLNSGADDYLVKPFNLGELSARILAVARRYSG 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           S         + +    R   + G+   L  RE  +L+ L+   G  ++K QI  A+Y  
Sbjct: 122 SPQPTIRFADLEIDQPQRRVRLDGKDVVLTGREWAVLDLLVTRPGAIISKDQIEEALY-A 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           F   +E N VE ++S+LRKK+    G D + + R +GY +
Sbjct: 181 FGSEIESNTVEVYVSRLRKKI----GKDRIRTARGVGYCL 216


>gi|154499881|ref|ZP_02037919.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC
           29799]
 gi|150271479|gb|EDM98736.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC
           29799]
          Length = 225

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 5/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +    +  +     +   +         +++ DV  ++  L   G    
Sbjct: 3   ILIVEDEVRLAEALSQIMAEQRYQTDVVYTGSDGLDYALTSQYDVIVLDVMLP--GLNGF 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R +R AH+  P++ ++        +   D G DD + KP    E++AR+ A+ RR  
Sbjct: 61  EVVRRLRSAHNSTPVLMLTAKDETADKVTGLDCGADDYMTKPFDPEELMARIRALTRRQG 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V         + +    R      +   L  +E  +++ L+AN    V K  I + ++G
Sbjct: 121 EVLGETMSVADLTLTLSTRSLSRGEKSVRLGFKEFEVMKLLLANSSAVVPKDDIITRVWG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           L +   E+N VE ++S LRKKL        + + R +GY +++
Sbjct: 181 L-ESDAEDNNVEVYVSFLRKKLAFLDSVVQIRTMRKVGYFLEY 222


>gi|229101340|ref|ZP_04232084.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228682045|gb|EEL36178.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 223

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 81/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L    + D+  ++  +        
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIEQKKFDIILLDVMMPN--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYK 219


>gi|197334071|ref|YP_002154883.1| protein PetR [Vibrio fischeri MJ11]
 gi|197315561|gb|ACH65008.1| protein PetR [Vibrio fischeri MJ11]
          Length = 239

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ + + P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQV 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSAEDKMIEFGEFRLNLGTREMFRNDEPMPLTSGEFAVLKSLVTNMREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMIEEDPSRPRYIQTVWGLGYVF 232


>gi|167758971|ref|ZP_02431098.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704]
 gi|167663378|gb|EDS07508.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704]
          Length = 236

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 88/227 (38%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A V++                 +        +S   D+  ++  L       +
Sbjct: 9   ILVVEDDAPVRNLITTTLESQNYKYMAAANGNQAVMSAASGSPDIILMDLGLPD--MDGV 66

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ + IR  S  P+I IS        +D  D+G DD + KP    E+LAR+ +  RR++ 
Sbjct: 67  DVIKKIRTWSVAPIIVISARSDDHDKVDALDAGADDYLTKPFSVEELLARLRSTLRRVQY 126

Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                  + +    G + +        +      L   E  +L  L  N GK +    I 
Sbjct: 127 LMQKDEGNASIFHNGELTIDYGAGTVSIGDHEIHLMPLEYSLLCLLAKNVGKVLTYQFIL 186

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             ++ +     + + +  +++ LRKK+  +K     + +   +GY +
Sbjct: 187 DKVW-VNAIESDRSSLRVYMASLRKKIEKDKNHPQYIQTHIGVGYRM 232


>gi|153008164|ref|YP_001369379.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|239833135|ref|ZP_04681464.1| Transcriptional regulatory protein chvI [Ochrobactrum intermedium
           LMG 3301]
 gi|151560052|gb|ABS13550.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
 gi|239825402|gb|EEQ96970.1| Transcriptional regulatory protein chvI [Ochrobactrum intermedium
           LMG 3301]
          Length = 239

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +  +       +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPR--MDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR+  
Sbjct: 68  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +             E G + +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 128 RDGTAKPTGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDDFEMIETLYGVGYRF 236


>gi|229171369|ref|ZP_04298954.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612073|gb|EEK69310.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 223

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 81/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G      NS      L      D+  ++  +        
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIEQKDFDIILLDVMMPN--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  +   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYNDKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYK 219


>gi|209573922|gb|ACI62899.1| two component response regulator CusR1 [Acidithiobacillus
           thiooxidans]
          Length = 224

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D +         F + G  ++  ++    + L      +V  ++  L  +     
Sbjct: 3   ILVIEDESKTAAFLKKGFNELGYVVDVADNGVDGQHLAEIGEYEVIVLDLMLPQR--DGW 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  H   P+I ++   ++   ++    G DD + KP    E+LAR+ +I RR  
Sbjct: 61  WVLQEIRKRHPDQPVILLTALDAVAQRVEGLRRGADDYLVKPFAFSELLARIHSILRRSN 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +        + +               L  +E R+L YLM   G+ + +T+I   ++ 
Sbjct: 121 LRTEETIYYADLEMDLLRHKIWRAATPINLAPQEFRLLAYLMRFPGEVLTRTRIAEQVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +     + NVV+  I +LR+K+ +      + + R +GY ++
Sbjct: 181 MH-FESDSNVVDVAIRRLRRKVDDPFPDKLIHTLRGVGYVLE 221


>gi|254974102|ref|ZP_05270574.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091501|ref|ZP_05320979.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313229|ref|ZP_05354812.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255515919|ref|ZP_05383595.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649013|ref|ZP_05395915.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260682204|ref|YP_003213489.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685803|ref|YP_003216936.1| two-component response regulator [Clostridium difficile R20291]
 gi|306519129|ref|ZP_07405476.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260208367|emb|CBA60866.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211819|emb|CBE02210.1| two-component response regulator [Clostridium difficile R20291]
          Length = 224

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 15/225 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR----EDVSAIEAFLIGKG 57
            +++DD     +G I L   D   + G+     +    S  +     D+  ++  +    
Sbjct: 5   ILVVDDE----EGIITLL-KDYFEMNGYEVYTAQSGKDSLKKISKNPDIILLDINMPE-- 57

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
              +E+   IR +   P++ ++        ++ F +G DD + KP    E+ ARV+A  R
Sbjct: 58  IDGIEVCNRIRDYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLR 117

Query: 118 RLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           R +  +N+ +      + +  + R   +      L ++E  I+E L  N G+   K +I+
Sbjct: 118 REQRKSNQTKIKFYNDLTIDYEKRLICIYNNQISLSKKEFDIVELLSMNPGQVFDKEKIY 177

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
             ++G ++     +V+  HI K+R KL      + +++   +GY 
Sbjct: 178 DRVWG-YNSNGNSDVIMEHIRKIRIKLSKHTLENYIETVWGVGYK 221


>gi|24373510|ref|NP_717553.1| transcriptional regulatory protein PhoP [Shewanella oneidensis
           MR-1]
 gi|24347813|gb|AAN54997.1|AE015637_13 transcriptional regulatory protein PhoP [Shewanella oneidensis
           MR-1]
          Length = 224

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 105/222 (47%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++         D G  ++   + +   +  ++   DV+ ++  L  +    +
Sbjct: 3   ILVVEDDLILSHHLKVQLSDLGNQVQVALTAKEGFFQATNYPIDVAIVDLGLPDQ--DGI 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            L + +R    + P++ ++   + Q  ++  ++G DD + KP    E++AR+ A+ RR  
Sbjct: 61  SLIQQLREEGVKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                   +G +++    +   +  ++  +   E  ILEYLM +  + VAK ++   IYG
Sbjct: 121 GFVKPVITSGELKLDLAAKQVTLGNDIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D+  + N +E  +S+LRKKL      +P+ + R  GY  +
Sbjct: 181 --DKEGDPNTIEVMVSRLRKKLTRDGIDNPIATIRGQGYKFN 220


>gi|329923332|ref|ZP_08278816.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941424|gb|EGG37716.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 228

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +       +D   ++     E    +          ++  +   G+   
Sbjct: 7   ILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHAIHCMVLDIMMP--GQNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R IRA S VP++ +S        +     G DD + K     EI+ARV A+ RR   
Sbjct: 65  ELCRRIRAESHVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSAT 124

Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                    + G +R+    R+  V+G    L  +E  +L     +        Q+ +  
Sbjct: 125 RQPVEGRVLDYGRLRLNLSTREVVVEGNNVVLTPKEFELLRLFAEHPRHVFTYDQLLAKF 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +   D   + + +  H+S+LR+K+  +      + +   +GY  +
Sbjct: 185 W---DGVGDRHTIRVHLSRLREKIEADPNQSQFLVNVWGVGYRFE 226


>gi|229015904|ref|ZP_04172869.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022125|ref|ZP_04178677.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739177|gb|EEL89621.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745391|gb|EEL95428.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 223

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       +    E L+   ++D   I   ++       
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFC--MKATSGLEALELIEQKDFDIILLDVMMPNMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYNEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
              +E   ++SHI  +R KLR K     D +++   +GY 
Sbjct: 180 QTDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYK 219


>gi|225567922|ref|ZP_03776947.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM
           15053]
 gi|225163210|gb|EEG75829.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM
           15053]
          Length = 225

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +         D G S+    +   ++ ++ + R +V  +   ++  G    
Sbjct: 4   ILLVEDNEELAGLLRDFLVDRGYSV--LRAARGDDAVRYAERGEVRLVLLDIMLPGMDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR    VP++ +S     Q  L  ++ G DD + KP+    + A+V A+ +R   
Sbjct: 62  AVCRQIRKSQNVPVLIMSAKSGKQNKLTGYELGADDYMEKPVDPEILSAKVNALLKRSGR 121

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +       +G I +    R   ++G+   L  +E  +L   + N GK + K  IF  ++G
Sbjct: 122 AQEEMLLVSGEITLNRKARTVNLRGKPLELNVKEYELLLLFVRNPGKTLRKEYIFGNVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221
             D   E   +  HI  LR K+         + +   +GY  +
Sbjct: 182 T-DSFSESQTLTVHIKMLRAKIEENPREPKRILTVWGVGYRYE 223


>gi|223936641|ref|ZP_03628552.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223894805|gb|EEF61255.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 230

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +  G   +   +   +   N  +      +     +  ++  L   G    
Sbjct: 5   ILIIEDDPHIALGLEEVLKSESYEVALCNRGDKAMEAFNRLHPALIVLDVMLP--GLSGY 62

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ + +RA     P++ ++        +   D G DD V KP   RE+LAR+ A+ RR++
Sbjct: 63  DVCKQLRAKKINTPILMLTAKGQEIDKVIGLDLGADDYVTKPFGVRELLARIQALLRRIE 122

Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +        G   +     +         L  RE ++L+    + G+ +++ ++ 
Sbjct: 123 KPAAESIGKESFTIGDATIDPRTFELRRGKVQEELTARELKLLQLFHGHPGEVLSRDRLL 182

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           + ++G +        ++  I +LRKKL +       + +   +GY +
Sbjct: 183 NDVWG-YGYYGTTRTLDQVIVQLRKKLGDNGAEPKHLVTVHGVGYKM 228


>gi|164688486|ref|ZP_02212514.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM
           16795]
 gi|164602899|gb|EDQ96364.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM
           16795]
          Length = 224

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   ++    A    +G S   F + + E  L       +  I   ++       
Sbjct: 4   ILVIEDNKNMRKLICATLKQNGYS--TFEAEDGEVGLDVLDTTHIDLIICDIMMPNMDGY 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E    +R  H + P+I ++    L+     F  G DD + KPI   E++ R+ AI RR K
Sbjct: 62  EFTETLRDGHCETPIIIVTAKEQLEDKKKGFSIGADDYMVKPIDFEELILRIGAILRRSK 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V++++   G   +  +       GE   LP++E  +L  L+++      + Q+   I+G
Sbjct: 122 IVNDHKITIGNTVLDYNSLSVTSNGECNTLPKKEFYLLFKLVSSPDTIFTRRQLLDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + +   +E  V+ HI ++R++ R    F+ + + R LGY 
Sbjct: 182 M-ESMADERTVDVHIKRIRERYRASNDFE-IVTVRGLGYK 219


>gi|157377007|ref|YP_001475607.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319381|gb|ABV38479.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 224

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D AL+ +         G   +  +     ++L      D   ++  L       L
Sbjct: 3   LLLVEDNALLVEELEKQLKQAGYVTDVTDKAAEADYLLKETNYDCVILDIGLPD--GNGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL    R      P+I ++        ++ F++G DD + KP H +E+LAR+ A+ +R  
Sbjct: 61  ELLERWRNQGINTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLARIHALIQRAH 120

Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                 +       + +  + +   V   +F L   E R+L+  + +  K ++K+Q+   
Sbjct: 121 GKASLPSKELSFSGVTLDENQQSVMVGSNLFELTAMEFRLLKIFLMSPQKLLSKSQLTDK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +Y  FD+  E NVVE +++ LRKKL    G   ++++R  GY  
Sbjct: 181 LY-QFDDEKESNVVEVYVTHLRKKL----GKTAIETRRGQGYIF 219


>gi|83718337|ref|YP_439100.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|167577524|ref|ZP_02370398.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|167615672|ref|ZP_02384307.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257142209|ref|ZP_05590471.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83652162|gb|ABC36226.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 219

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 9/220 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   + +        DG   +   +L       + A  D+      L+    + L+
Sbjct: 4   LLVEDDPWLGEAVRDQIEKDGHPTDFVGNLADARRHVAVATYDLIL--LDLLLPDGRGLD 61

Query: 63  LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
             R +RA  S VP+I ++    + + +   ++G DD + KP    E+ ARV+A+ RR   
Sbjct: 62  FLRELRAGGSTVPVIILTALDQVASRIAGLNAGADDYLVKPFDLSELSARVSAVARRYSG 121

Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + N   + G + V +  R     G    L   E  +LE L+ + G  ++K+Q+   +Y  
Sbjct: 122 NPNPLVKLGELSVDTAARSVMRGGARIDLTASEWALLETLIQHPGMLLSKSQLEERLYSF 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            DE V  N +E H+S+LRKKL    G D +++ R LGY +
Sbjct: 182 SDE-VGSNTIEVHVSRLRKKL----GADLIETVRGLGYRL 216


>gi|30260742|ref|NP_843119.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525860|ref|YP_017209.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183580|ref|YP_026832.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|170708227|ref|ZP_02898673.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|229603745|ref|YP_002865187.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|30254191|gb|AAP24605.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501008|gb|AAT29684.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177507|gb|AAT52883.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|170126883|gb|EDS95764.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|229268153|gb|ACQ49790.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++  +        
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPN--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLRLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     + +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYK 219


>gi|291167031|gb|EFE29077.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 239

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +              +   +  +    L  + + D+  ++  +  K    +
Sbjct: 6   ILVVDDDVEIAKSIQLYLNSQNYKVLVAHDGQEALDLFHNQKIDLILMDIMMPKK--NGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           +   +IR  S +P++ +S        +   + G DD + KP +  E++ARV ++ RR   
Sbjct: 64  DTTMLIRQESIIPIVILSAKSEDTDKIMGLNIGADDYITKPFNPMELIARVNSVLRRYSR 123

Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                 + +      G I +  + +   V  E   +   E +IL  LM+  GK  +  +I
Sbjct: 124 YGGRYSEETEQSIRIGGIELNKETKQIFVDEEEVRITPLEYKILLLLMSYPGKVFSIDEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++       E   V  HI ++R+K+  N      +     +GY  +
Sbjct: 184 YEQVWKEPAYNPE--TVTVHIRRIREKIEINPKEPRYLKVVWGIGYKFE 230


>gi|153955658|ref|YP_001396423.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856032|ref|YP_002473154.1| hypothetical protein CKR_2689 [Clostridium kluyveri NBRC 12016]
 gi|146348516|gb|EDK35052.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569756|dbj|BAH07740.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 229

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +  G       +G  ++   S             D+  ++  L        
Sbjct: 4   ILIVEDNIALSTGLSFDLEREGYKVDTVCSSGQAREAVRETEFDLIVLDINLPD--GSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R I+    +PLI ++     + T+  F+ G DD + KP        RVAA+ +R + 
Sbjct: 62  ELCRWIKELKDIPLIFLTACDMEKDTIKGFELGADDYITKPFSVGIFRRRVAAVLKRCEK 121

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            N  N    G + V  D      + + F L   E R+++  +AN GK + +  +   ++ 
Sbjct: 122 ENIGNIYNDGYLMVDFDKLMVIRENKAFMLTSSEYRLMKIFVANSGKVLTRQILLQKLWD 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
                V+E+ +  ++++LR K++NK G   + +   +GY 
Sbjct: 182 NDGNFVDEHALTVNVNRLRSKIQNK-GHKYIKTVYGMGYM 220


>gi|152998342|ref|YP_001343177.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839266|gb|ABR73242.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 244

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60
             ++DD   ++            ++   +S E      ++    D+  ++  L   G+  
Sbjct: 7   IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLP--GQDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
             + R +R  SQVP+I ++        +   + G DD + KP + RE+LAR+ AI RR++
Sbjct: 65  FAVCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRRME 124

Query: 121 VSNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +                   + +  R+   + E   L   +  +L   + + G  + + 
Sbjct: 125 HTEVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGAVLTRE 184

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            I     G  D A  +  ++ H+S+LR++LR +      + + R  GY +
Sbjct: 185 LIAENTRGR-DSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYIL 233


>gi|262368892|ref|ZP_06062221.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262316570|gb|EEY97608.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 226

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 13/225 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D  ++ +    L       +   N+             DV  ++  L       +
Sbjct: 4   ILIIEDDFMIAESTQTLLRYQQFDVVWVNNGFDGLKQLQQYPFDVVLLDLGLPM--MDGM 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           ++ + IR+ +  +P++ IS    LQ  +D  + G DD + KP    E+LAR+ A+ RR  
Sbjct: 62  QVLKNIRSLYPTLPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSG 121

Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
               +  +       + +  D    + +G+   L  RE  IL  L+++  K  +KT +  
Sbjct: 122 ALKQQKQSQTLSYAGLELDEDLHLAKYKGQTIDLSNREWAILIPLVSHPNKIFSKTNLEE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +Y L D  +  N +E +I  LR KL    G D + + R LGY +
Sbjct: 182 KLYDL-DSEINSNTIEVYIHHLRAKL----GKDFIRTIRGLGYRL 221


>gi|148260878|ref|YP_001235005.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326404273|ref|YP_004284355.1| putative two-component response regulator [Acidiphilium multivorum
           AIU301]
 gi|146402559|gb|ABQ31086.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325051135|dbj|BAJ81473.1| putative two-component response regulator [Acidiphilium multivorum
           AIU301]
          Length = 233

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   + +        +G ++  +   E       +   D++ ++  +       +
Sbjct: 5   IALVDDDRHILESVQMTLEQEGFAVRTYTDGESALQGLMTRPADLAVLDIKMPR--MDGM 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL + +RA S +P+I ++        L     G DD + KP   R +L R+ A+ RR + 
Sbjct: 63  ELLQRLRARSAMPVIFLTSKDDELDELMGLRLGADDYITKPFSQRLLLERIRALLRRNEA 122

Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S               G + +         +G+   L   E  +++ L A  G   ++ Q
Sbjct: 123 SRAEGSGAAPTGVIGRGDLTLDETKHQCLWKGQDIQLTVTEFLLVKALAARPGMVKSRDQ 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           +  A YG  +  V++  ++SHI +LR+K R     FD +++   +GY 
Sbjct: 183 LIDAAYGE-NVYVDDRTIDSHIKRLRRKFRAVDDEFDQIETLYGIGYR 229


>gi|91783509|ref|YP_558715.1| osmolarity response regulator [Burkholderia xenovorans LB400]
 gi|170692385|ref|ZP_02883548.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187923869|ref|YP_001895511.1| osmolarity response regulator [Burkholderia phytofirmans PsJN]
 gi|209520706|ref|ZP_03269456.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295676509|ref|YP_003605033.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|296157818|ref|ZP_06840652.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307729628|ref|YP_003906852.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|323526056|ref|YP_004228209.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|91687463|gb|ABE30663.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
 gi|170142815|gb|EDT10980.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187715063|gb|ACD16287.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|209498868|gb|EDZ98973.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295436352|gb|ADG15522.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295892064|gb|EFG71848.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307584163|gb|ADN57561.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
 gi|323383058|gb|ADX55149.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 244

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 19/210 (9%)

Query: 27  EGFNSLEFEEW-----LQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISD 80
           +GFN    E       L    R D+  ++  L   GE  L + R +R ++ + P+I ++ 
Sbjct: 32  QGFNVYVAENAPSMNKLWVRERFDLLVLDLMLP--GEDGLSICRRLRGSNDRTPIIMLTA 89

Query: 81  YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---------NRAETGPI 131
                  +   + G DD + KP + RE++AR+ A+ RR   S             E G  
Sbjct: 90  KGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQSPSELPGAPSETTEVFEFGEF 149

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            +    R     G+  PL   E  +L+    +  + +++ ++     G  +  V +  ++
Sbjct: 150 ALNLATRTLTKAGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGR-EYEVFDRSLD 208

Query: 192 SHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             IS+LRK +  +      + +   LGY  
Sbjct: 209 VQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238


>gi|88861074|ref|ZP_01135709.1| osmolarity response regulator [Pseudoalteromonas tunicata D2]
 gi|88817002|gb|EAR26822.1| osmolarity response regulator [Pseudoalteromonas tunicata D2]
          Length = 241

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 10  ILVVDDDMRLRSLLERYLVEQGYIVRSAANSEQMDRLLERENFHLLVLDLMLP--GEDGL 67

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   + +P++ ++        +   + G DD + KP + RE+LAR+ AI RR  
Sbjct: 68  SICRRLRQKENDIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRRS 127

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      N+   G   +    R+     EV  L   E  +L+ L+ +  + +++ +
Sbjct: 128 KDVPGAPTAEENQITFGQFTLNLATREMAKGDEVISLTSGEFAVLKALVTHPREPLSRDK 187

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 188 LMNLARGR-DYSALERSIDVQVSRLRRMVEVDPATPRYIQTVWGLGYVF 235


>gi|115351977|ref|YP_773816.1| osmolarity response regulator [Burkholderia ambifaria AMMD]
 gi|121601171|ref|YP_993296.1| osmolarity response regulator [Burkholderia mallei SAVP1]
 gi|124384064|ref|YP_001029261.1| osmolarity response regulator [Burkholderia mallei NCTC 10229]
 gi|126439716|ref|YP_001059384.1| osmolarity response regulator [Burkholderia pseudomallei 668]
 gi|126448269|ref|YP_001080804.1| osmolarity response regulator [Burkholderia mallei NCTC 10247]
 gi|126455359|ref|YP_001066655.1| osmolarity response regulator [Burkholderia pseudomallei 1106a]
 gi|134276984|ref|ZP_01763699.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305]
 gi|134295968|ref|YP_001119703.1| osmolarity response regulator [Burkholderia vietnamiensis G4]
 gi|161524506|ref|YP_001579518.1| osmolarity response regulator [Burkholderia multivorans ATCC 17616]
 gi|170699751|ref|ZP_02890785.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171320810|ref|ZP_02909815.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172060899|ref|YP_001808551.1| osmolarity response regulator [Burkholderia ambifaria MC40-6]
 gi|217421794|ref|ZP_03453298.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 576]
 gi|221209186|ref|ZP_03582178.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD2]
 gi|221215040|ref|ZP_03588007.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD1]
 gi|226197493|ref|ZP_03793070.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812712|ref|YP_002897163.1| osmolarity response regulator [Burkholderia pseudomallei MSHR346]
 gi|238562218|ref|ZP_00440797.2| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse
           4]
 gi|242317900|ref|ZP_04816916.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1106b]
 gi|251766642|ref|ZP_02264532.2| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20]
 gi|254178039|ref|ZP_04884694.1| DNA-binding response regulator RisA [Burkholderia mallei ATCC
           10399]
 gi|254179405|ref|ZP_04886004.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1655]
 gi|254198234|ref|ZP_04904656.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei S13]
 gi|254206419|ref|ZP_04912771.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU]
 gi|254252143|ref|ZP_04945461.1| Response regulator [Burkholderia dolosa AUO158]
 gi|254260987|ref|ZP_04952041.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1710a]
 gi|254297288|ref|ZP_04964741.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           406e]
 gi|254358171|ref|ZP_04974444.1| DNA-binding response regulator OmpR [Burkholderia mallei
           2002721280]
 gi|115281965|gb|ABI87482.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|121229981|gb|ABM52499.1| DNA-binding response regulator RisA [Burkholderia mallei SAVP1]
 gi|124292084|gb|ABN01353.1| DNA-binding response regulator RisA [Burkholderia mallei NCTC
           10229]
 gi|124894752|gb|EAY68632.1| Response regulator [Burkholderia dolosa AUO158]
 gi|126219209|gb|ABN82715.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 668]
 gi|126229001|gb|ABN92541.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1106a]
 gi|126241139|gb|ABO04232.1| DNA-binding response regulator RisA [Burkholderia mallei NCTC
           10247]
 gi|134139125|gb|ABO54868.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
 gi|134250634|gb|EBA50713.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305]
 gi|147753862|gb|EDK60927.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU]
 gi|148027298|gb|EDK85319.1| DNA-binding response regulator OmpR [Burkholderia mallei
           2002721280]
 gi|157807187|gb|EDO84357.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           406e]
 gi|160341935|gb|ABX15021.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|160699078|gb|EDP89048.1| DNA-binding response regulator RisA [Burkholderia mallei ATCC
           10399]
 gi|169654975|gb|EDS87668.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei S13]
 gi|170135342|gb|EDT03636.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171093932|gb|EDT39048.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171993416|gb|ACB64335.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
 gi|184209945|gb|EDU06988.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1655]
 gi|217395536|gb|EEC35554.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 576]
 gi|221164976|gb|EED97455.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD1]
 gi|221170924|gb|EEE03379.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD2]
 gi|225930872|gb|EEH26882.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506008|gb|ACQ98326.1| osmolarity response regulator [Burkholderia pseudomallei MSHR346]
 gi|238523088|gb|EEP86529.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse
           4]
 gi|242141139|gb|EES27541.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1106b]
 gi|243065036|gb|EES47222.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20]
 gi|254219676|gb|EET09060.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1710a]
          Length = 244

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 14/212 (6%)

Query: 20  GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGI 78
           G+ G ++    +      L    R D+  ++  L   GE  L + R +R ++ + P+I +
Sbjct: 30  GEQGFNVYVAENATAMNKLWVRERFDLLVLDLMLP--GEDGLSICRRLRGSNDRTPIIML 87

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---------NRAETG 129
           +        +   + G DD + KP + RE++AR+ A+ RR   +             E G
Sbjct: 88  TAKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFG 147

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
              +    R     G+  PL   E  +L+    +  + +++ ++     G  +  V +  
Sbjct: 148 EFSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGR-EYEVFDRS 206

Query: 190 VESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++  IS+LRK +  +      + +   LGY  
Sbjct: 207 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238


>gi|300932843|ref|ZP_07148099.1| two-component system response regulator MtrA [Corynebacterium
           resistens DSM 45100]
          Length = 224

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 86/220 (39%), Gaps = 5/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + +    +   +G                 +   D+  ++  L   G   +
Sbjct: 5   ILVVDDDPAIAEMLTIVLQGEGFETVVVGDGNEAVNAARNHNPDLILLDVMLP--GMNGV 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLK 120
           ++ R IR  S VP++ ++            +SG DD V+KP   +E +    A + R   
Sbjct: 63  DVCRAIREDSTVPIVMLTARTDTVDVGLGLESGADDYVHKPFKPKELVARVRARLRRNTD 122

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
               + E   + +   G       EV PL   E  +L  L +   +   + ++   ++G 
Sbjct: 123 EKPEKLEISGLTIDVSGHQVTRGDEVIPLTPIEFDLLLTLASKPRQVFTREELLEKVWG- 181

Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           + ++ +  +V  HI +LR K+  +      + + R +GY 
Sbjct: 182 YRKSSDTRLVNVHIQRLRSKIEVDPDDPRIIQTVRGVGYK 221


>gi|291566616|dbj|BAI88888.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 774

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 24/231 (10%)

Query: 2   FVLIDDRA---------LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52
            +L+DD           L    Y+     DG S  G+N +E  E+        +  ++  
Sbjct: 3   ILLVDDDQYLNQQLSKSLKAHNYVVDIATDGES--GWNYIESFEY-------SLVILDIM 53

Query: 53  LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111
           L       + L R +R+H+ Q+P++ ++   S +  +   D+G DD + KPI   E++AR
Sbjct: 54  LP--KLNGIALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIAR 111

Query: 112 VAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
           + A+ RR  +S         + +     +   Q  V PL  +E  ++E  + +  +  + 
Sbjct: 112 MRALLRRATISLPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSY 171

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
             I   ++ + + A + N V +HI  LR KL++  G    +++   +GY I
Sbjct: 172 DSIIEHLWSIEEPAAD-NTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRI 221



 Score = 88.0 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D   + +   AL    G+ ++  N+      +   +  D+  I+  +       +
Sbjct: 488 IIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPH--YNGI 545

Query: 62  ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L ++IR   +   +P++ ++++   +T  + F +G DD ++KP+   E++AR+ +   R
Sbjct: 546 DLCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHR 605

Query: 119 LKVSNNRAETGPIR 132
            ++  N AE   + 
Sbjct: 606 SRLWRNIAEIDTLT 619



 Score = 39.9 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++D   ++ +  I      G+       +     +    +  +  +E       E  L
Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104
            L   I   H ++P++  S   S    L     G    + KP+ 
Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMS 467


>gi|255654863|ref|ZP_05400272.1| two-component response regulator [Clostridium difficile QCD-23m63]
          Length = 230

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 95/230 (41%), Gaps = 18/230 (7%)

Query: 3   VLIDDRA----LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           ++IDD      L+K        +      G       + L   +++D   +   ++  G 
Sbjct: 5   LIIDDDKDLCILLKKSISIEHIEANYCHSG------RDGLVELSKQDYQLVVLDVMMPGM 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
              E    IR +S +P++ ++      + +    +G DD + KP    E  ARV ++ RR
Sbjct: 59  DGFETMEQIRKYSSIPILMLTSKNDNYSKVHGLRAGADDYLTKPFEIAEFTARVLSLIRR 118

Query: 119 LKV------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     + +     + +  D       GE   LP +E  +L Y   ++GK + K Q
Sbjct: 119 YTRFNPKNEESQQLSFKGLLIDLDQHTVTTNGETMLLPPKEFGVLLYCARHQGKILTKQQ 178

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+ A++G      + N + + IS+LRKK+  +      + + + +GY  +
Sbjct: 179 IYEAVWGEPYVYDDSN-IMAIISRLRKKIELDPSSPIYLQTIKGIGYQFN 227


>gi|209965047|ref|YP_002297962.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum
           SW]
 gi|209958513|gb|ACI99149.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum
           SW]
          Length = 234

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 6/221 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L++D   +      +   +G  ++  ++   E+ L+     D   I   L+       E
Sbjct: 4   LLVEDDPSMAKSIELMLNSEGYIVD--STELGEDGLEIGKLYDYDIIILDLMLPDIDGYE 61

Query: 63  LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           + R +R A    P++ +S    L   +     G DD + KP   RE++AR+ AI RR K 
Sbjct: 62  VLRRLRSARVTTPILILSGLSELDHKIKGLGVGADDYLTKPFDKRELVARLQAIVRRSKG 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            S++   TG + V  D R  EV G+   L  +E  ILE L   +G  + K    + +YG 
Sbjct: 122 HSDSIIRTGKLTVNLDARTVEVDGQPLHLTGKEYGILELLSLRKGTTLTKEMFLNHLYGG 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            DE  E  +++  + KLRKKL     G + +++    GY +
Sbjct: 182 MDE-PELKIIDVFVCKLRKKLTTATKGENYIETVWGRGYVL 221


>gi|2947107|gb|AAC28777.1| regulatory protein BvrR [Brucella abortus]
          Length = 237

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +  +       +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPR--MDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR   
Sbjct: 68  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAR 127

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                        E G + +  +      +GE   L   E  IL  L    G   ++  +
Sbjct: 128 RHAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDAL 187

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
             A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 MDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 234


>gi|78066718|ref|YP_369487.1| osmolarity response regulator [Burkholderia sp. 383]
 gi|107028883|ref|YP_625978.1| osmolarity response regulator [Burkholderia cenocepacia AU 1054]
 gi|116689959|ref|YP_835582.1| osmolarity response regulator [Burkholderia cenocepacia HI2424]
 gi|170733298|ref|YP_001765245.1| osmolarity response regulator [Burkholderia cenocepacia MC0-3]
 gi|254247957|ref|ZP_04941278.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|77967463|gb|ABB08843.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
 gi|105898047|gb|ABF81005.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116648048|gb|ABK08689.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|124872733|gb|EAY64449.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|169816540|gb|ACA91123.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
 gi|325523540|gb|EGD01847.1| osmolarity response regulator [Burkholderia sp. TJI49]
          Length = 244

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 14/212 (6%)

Query: 20  GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGI 78
           G+ G ++    +      L    R D+  ++  L   GE  L + R +R ++ + P+I +
Sbjct: 30  GEQGFNVYVAENATAMNKLWVRERFDLLVLDLMLP--GEDGLSICRRLRGSNDRTPIIML 87

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---------NRAETG 129
           +        +   + G DD + KP + RE++AR+ A+ RR   +             E G
Sbjct: 88  TAKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFG 147

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
              +    R     G+  PL   E  +L+    +  + +++ ++     G  +  V +  
Sbjct: 148 EFSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGR-EYEVFDRS 206

Query: 190 VESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++  IS+LRK +  +      + +   LGY  
Sbjct: 207 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238


>gi|91787833|ref|YP_548785.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91697058|gb|ABE43887.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 223

 Score =  208 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A ++         DG  ++     E   +L      D+  ++  L       L
Sbjct: 3   LLLIEDDAALRLTLARQLEADGYRVDQAKDGEEGLFLAREYPVDLVIVDLGLP--KLNGL 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + + +R   + +P++ ++   S Q  +   ++G DD + KP  + E+ AR+ A+ RR L
Sbjct: 61  TIVQRLRQEGRAIPILILTARGSWQDKVVGLEAGADDYLVKPFEYPELAARLKALLRRSL 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K +++    GP+ +    +   + G    L   E R+LEYL+  R   V K  +   +Y 
Sbjct: 121 KTASDVLTLGPLSIDLSAQAARLNGAALELTAFEYRLLEYLVRQRPGIVTKQALSDYLY- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E  + NV+E  + +LR+KL       P+++ R  GY  
Sbjct: 180 PHGEDRDSNVLEVLVGRLRRKLDPDGSLGPIETVRGRGYRF 220


>gi|317968088|ref|ZP_07969478.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 256

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++         G  ++        + L      D+  ++  L       L
Sbjct: 5   ILLIEDDGDMRELVAGHLEHSGFDVQRAEDGIKGQALALQYTPDLVLLDLMLPKV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     S++P++ ++   S +  +  F+SG DD + KP    E+L R+ A+ RR
Sbjct: 63  TLCQRLRRDERTSRIPVLMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALLRR 122

Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N     G + +  +  +     E   L   E  +L  L+   G+ VA + 
Sbjct: 123 SDRAPLSTKHNEILNYGCLTLVPERFEAIWFDEPVRLTHLEFELLHCLLQRHGQTVAPSL 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 183 ILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231


>gi|319652565|ref|ZP_08006680.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317395819|gb|EFV76542.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 223

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++IDD A ++      F  +G  +        E   Q+  + D+  ++  +       L
Sbjct: 4   ILIIDDEADMRKLLADYFEVNGYHIMTAKDGN-EAVRQAEKQPDIILLDINMPE--INGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR++   P++ ++        +  F +G DD + KP    E+ ARV A  RR   
Sbjct: 61  DVCRKIRSYVSCPILFLTARVEDADKISGFQAGGDDYIQKPFSIHELGARVDAHLRREMR 120

Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +  +      G + +    R          L ++E  I+E L  + G    K +++  ++
Sbjct: 121 NQKKTTVKFSGDLVIDYSERALYCNDIQISLAKKEFDIIELLSKHPGMVFDKERMYERVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G  +E  + +V+  HI ++R KL+       +++   +GY 
Sbjct: 181 GT-NEEGDSSVIPEHIRRIRSKLKEHGCGSKIETVWGVGYK 220


>gi|291542560|emb|CBL15670.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 225

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 105/224 (46%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +  +        S++          L    + D+  ++  L   G   +
Sbjct: 3   ILVIEDERALCETIVRSLKRLAYSVDFCYDGNKANELLGIEKYDLVLLDLNLP--GADGM 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R       ++ +S    +   ++  D+G +D + KP H  E+ AR+ ++ RR  
Sbjct: 61  TVLRTLRQTDRDTGVLILSARCEVADKVEGLDAGANDYLTKPFHLEELEARIRSLTRRRF 120

Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             NN     G +   +  R     G+   L R+E  ILEYL+ N+G+ V++ ++   ++ 
Sbjct: 121 TQNNVVLNCGKVAFDTKARVAVADGQELSLTRKEIGILEYLLLNQGRPVSQEELLDHVW- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D +V+   N +  HIS LRKKLR  LG+DP+ ++   GY ++
Sbjct: 180 --DNSVDNFSNSIRVHISALRKKLRAALGYDPIRNRIGEGYVME 221


>gi|289628083|ref|ZP_06461037.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646706|ref|ZP_06478049.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867466|gb|EGH02175.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 267

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++          ++  G           +    DV  ++  L   GE  L 
Sbjct: 41  LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTEETFDVVVLDLMLP--GEDGLS 98

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R+ S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 99  LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 158

Query: 123 NN----RAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +           R+ S  R      G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 159 RSDQRTTVRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 218

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL  +      + + R  GY  D
Sbjct: 219 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 262


>gi|257870932|ref|ZP_05650585.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257805096|gb|EEV33918.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 224

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   + +    +  + G   + F+  E   +   S   D+  ++  L        
Sbjct: 4   LLLIEDDRTLSENIKEIVAEIGEISQAFDGSEG-LYEAQSGIYDLIILDLMLPE--MNGY 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   +R H+ Q P++ ++    L+  +  F  G DD + KP +  E+L R  A+ +R  
Sbjct: 61  EVLAKLRQHTVQTPVLILTAKDGLEDKVAGFQKGADDYLTKPFYREELLMRCKALLKRSL 120

Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              + N+     +       +  +  ++ P+  +E  +L Y + NRG  + K QIF  I+
Sbjct: 121 GLFNENQVVYKGLTCNLSTNEVTIDEKLLPIQGKEFALLVYFLQNRGIILTKEQIFDRIW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G FD      VVE +IS LRK LR+      + + R +GY +
Sbjct: 181 G-FDSETTITVVEVYISNLRKHLRDTGIDKEIRTLRNVGYIM 221


>gi|167766709|ref|ZP_02438762.1| hypothetical protein CLOSS21_01215 [Clostridium sp. SS2/1]
 gi|167711463|gb|EDS22042.1| hypothetical protein CLOSS21_01215 [Clostridium sp. SS2/1]
          Length = 240

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +          +   +    + +  E +     ++V  +   ++      L
Sbjct: 11  ILVVDDDKEIVGAIKKRLEMEDYEI--ITAYDGLEAMDILMEQEVQLLIIDVMMPKMDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
                IR    +P+I +S        +     G DD ++KP    E++ARV +  RR   
Sbjct: 69  SATMKIRESKNIPIIILSAKTEESDKILGLSMGADDYISKPFRPDELVARVKSQLRRYMQ 128

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                  + +  +   G + +   G+   V GE   L   E +I+  LM N G+  +  +
Sbjct: 129 FGGMNAAESNKEQIINGGLILDMKGKRMMVDGEPVKLTATEYKIVSLLMNNLGRVFSADE 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I+  ++     A E N V  HI ++R+K+  +      +     +GY I+
Sbjct: 189 IYERVWNEEAYATE-NTVMVHIRRIREKIEIDAKNPRYLKVVWGIGYKIE 237


>gi|149021563|ref|ZP_01835618.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP23-BS72]
 gi|147930259|gb|EDK81244.1| DNA-binding response regulator VncR [Streptococcus pneumoniae
           SP23-BS72]
          Length = 218

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGY--ETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+  P+  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKATKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLD----LDCILTVRNVGYKLE 216


>gi|145224468|ref|YP_001135146.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145216954|gb|ABP46358.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 251

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +   +    +       ++      L      DV  ++  L   G   LE
Sbjct: 21  LVVDDEVPLAEVVASYLQREQFDAVVADNGVDAIALARDFDPDVVILDLGLP--GIDGLE 78

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S   ++ ++   +   T+     G DD V KP   RE++AR+ A+ RR ++ 
Sbjct: 79  VCRSLRTFSDAYVVMLTARDTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRLL 138

Query: 123 NNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +               G + +    R+  +  +   L R E  IL+ L    G  +++ 
Sbjct: 139 QSPPTGADREVTPPRRFGALSIDVAAREVRIADDPILLTRTEFDILQALSGRPGIVLSRR 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           Q+   I         + +V+ HI  LR+KL +       + + R +GY +
Sbjct: 199 QLLEIIRDEP-WVGNDQLVDVHIGHLRRKLGDDAARPRYIATVRGVGYRM 247


>gi|295107699|emb|CBL05242.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 230

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       +   S++  +  +    L      D+  ++  L       +
Sbjct: 9   ILIVEDERALCDAIARSLRNLAYSVDCCHDGQEALDLLGVEVFDLVVLDLNLPR--IDGM 66

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + + +R    +  ++ +S    +   +   D+G +D + KP H  E+ AR+ ++  RR 
Sbjct: 67  TVLKALRKTDRETKVLILSARGKVFDKVTGLDAGANDYLTKPFHLDELAARIRSLTLRRF 126

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N     G +   +  R   V GE   L R+E  ILEYLM N+G+ V++ ++   ++ 
Sbjct: 127 AQDNIVLTCGKLSFDTKARIASVGGEALSLTRKETGILEYLMLNQGRPVSQEELIEHVW- 185

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D +V    N    HIS LRKKLR+ LG+DP+ ++   GY ++
Sbjct: 186 --DSSVNSFSNATRVHISSLRKKLRSALGYDPIRNRIGEGYVME 227


>gi|225860601|ref|YP_002742110.1| VncR, response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230065|ref|ZP_06963746.1| VncR, response regulator [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255464|ref|ZP_06979050.1| VncR, response regulator [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502394|ref|YP_003724334.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|225728327|gb|ACO24178.1| VncR, response regulator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237989|gb|ADI69120.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|327390338|gb|EGE88679.1| response regulator [Streptococcus pneumoniae GA04375]
          Length = 218

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 106/220 (48%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D  ++++G      D G   E   + + +E L+  +  +V+ +   +       L
Sbjct: 3   ILIVEDEEMIREGVSDYLTDCGY--ETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   IR  SQVP++ ++ +   +  +  F S  D  + KP     +  RV AI++R   
Sbjct: 61  EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           +         +V  +     + G+  P+  +E  IL+YL+ N G+ + ++QI  A++   
Sbjct: 121 TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           DE   + V++ +I +LRKKL      D + + R +GY ++
Sbjct: 181 DEVPFDRVIDVYIKELRKKLD----LDCIFTVRNVGYKLE 216


>gi|171912348|ref|ZP_02927818.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Verrucomicrobium
           spinosum DSM 4136]
          Length = 231

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + I+D   ++          G +++  +S E    L   A  D   ++  L   G+  L
Sbjct: 3   LLFIEDATRLRKTVARALTRLGHAVDEASSAEEGAQLAELAAYDAVILDIMLP--GQSGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
           EL    R      P++ ++   S++  +    +G DD + KP    E+ AR+ A+  RR 
Sbjct: 61  ELLATWRQQQVDTPVLLLTALDSVEDRVRGLVTGADDYLIKPFAIIELAARLEALVRRRH 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++R   GP+ +    R     G    L  RE  +L+ L  + G+  ++ QI + +Y 
Sbjct: 121 GKPDSRIRVGPLEIDFAARTVSRLGNPVTLTAREFALLDCLARHPGQIFSREQIEARLYS 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             D  +  N V++ +  LR+KL        + ++R LGY +
Sbjct: 181 ETDSPL-SNAVDTAVYSLRRKLSPPGVPQLIHTRRGLGYLL 220


>gi|170756456|ref|YP_001779877.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169121668|gb|ACA45504.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 233

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +     ++  + G       S         + + D+  ++  +   G    
Sbjct: 7   ILIVEDDNDINKLLCSILKNKGYKSRAAFSGTEALMCVENEKWDMILLDLMIP--GISGE 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E    IR  ++ P+I +S   S +T L+  + G DD + KP    E++ARV +  RR   
Sbjct: 65  EAILKIRKITKAPIIIVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVNSNLRRYLE 124

Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                +  NN      I +  + ++ +V   +  L  RE  +LE L+ N  K  +K  IF
Sbjct: 125 FSTDEEKKNNILSYKDITLNKESKEVKVAQTIVILTAREFAVLELLLNNPNKVYSKANIF 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220
            +I+G  +   ++N V  H+S+LR KL   N  G D +++   +GY +
Sbjct: 185 ESIWGE-EFLGDDNTVNVHVSRLRSKLSKANNNGEDYIETVWAMGYRL 231


>gi|288918083|ref|ZP_06412440.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288350465|gb|EFC84685.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 267

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD + + +        +G  ++          +    R D   ++  L       L
Sbjct: 44  ILVVDDESTLSELLSMALRYEGWEVQTAPDGRGALKVARDFRPDAVVLDIMLPD--MDGL 101

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA S  VP++ ++   +++  +    +G DD V KP    E++AR+  + RRL 
Sbjct: 102 EVLRKLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRLH 161

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            S          G + +  + R+    G+   L   E  +L + M N  + ++K QI   
Sbjct: 162 RSTLSDGATLVVGDLIMNEESREVSRAGQEVRLTATEFELLRFFMRNPRRVLSKAQILDR 221

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++  +D   + NVVE ++S LR+K+ +      + + R  GY +
Sbjct: 222 VWN-YDFGGQANVVELYVSYLRRKI-DVGRQPMIHTMRGAGYVL 263


>gi|268608799|ref|ZP_06142526.1| DNA-binding response regulator [Ruminococcus flavefaciens FD-1]
          Length = 225

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   +      +   +G S +          L  +   D+  ++  L        
Sbjct: 5   IAIIEDDKDISSILANILKKNGYSYKQAYDGSQAMKLLKNESFDIVLMDLMLPYV--NGE 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R  S  P+I IS    ++T L+    G DD + KP    E++ R+  + RR++ 
Sbjct: 63  TLIYELRKISDTPVIVISAKSMMETKLEVLRLGADDYIIKPFDINEVIVRIEVVLRRVQT 122

Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +  +   E+G +++       E +G+   L  +E  +LE  M N  K   K +++ +++ 
Sbjct: 123 TKEKDVLESGGLKLILTENRAEYEGKPVQLTAKEMSLLELFMKNPKKTYTKAELYESVWN 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                 E+N +  H+S LR KL+   G + +++   +GY +
Sbjct: 183 DV-YYYEDNTINVHVSNLRNKLKKVSGREHIETVWGIGYRL 222


>gi|332995344|gb|AEF05399.1| two component transcriptional regulator, winged helix family
           protein [Alteromonas sp. SN2]
          Length = 229

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L++D A +++ Y+      G  +  F          + A  D++ I+  L  + E   
Sbjct: 5   IALVEDDAAIRENYLVALRAQGYKVNAFEDRPSATQAFNEALPDLAIIDIGLKEEMEGGF 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            L + +R  S   P+I  +   +   T+     G DD + K I    +LAR+AA++RR  
Sbjct: 65  LLCQQLRGLSPTLPIIFFTARDNDVDTISGLRMGADDYLTKDISMAHLLARIAALFRRSD 124

Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +        +    G ++V +        GE   L   E  +L  L+ + G   ++ Q+ 
Sbjct: 125 LMSAPVKQKDELRIGELKVDASRMTVSWSGEPVALTVTEFWMLHALIKHPGHVKSRQQLM 184

Query: 175 SAIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYS 219
                     V++  + SHI ++RKK ++    FD +D+   +GY 
Sbjct: 185 DE----SRMVVDDTTITSHIKRMRKKFIQLDPQFDHIDTVYGMGYR 226


>gi|332974949|gb|EGK11861.1| two component response regulator IrlR [Psychrobacter sp.
           1501(2011)]
          Length = 227

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   + +       + G  ++   N L+    L S    +V  ++  L       
Sbjct: 3   ILLVEDEVTLGEYIKKGLTEAGFLVDHKLNGLDGYHALMSET-YNVIIMDVMLPD--ISG 59

Query: 61  LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            EL +  RA   + P++ ++    L+  +   + G DD + KP    E++ R+  + RR 
Sbjct: 60  FELVKNYRAAGHITPVLFLTAKDDLEDRIKGIEIGGDDYLTKPFAFAELVVRIKNLLRRA 119

Query: 120 KVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
             S   N + +   + +    R     G    L  +E  +L++++   G+ + ++ I S 
Sbjct: 120 NQSEYLNTQLKIADLTLDLAKRTVHRGGVSIQLTSKEFALLQFMLEREGEVLPRSVIASQ 179

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++ + +   + NV++  I +LR K+        + + R +GY +
Sbjct: 180 VWDM-NFDSDTNVIDVAIRRLRVKIDEGFDLKLIHTVRGMGYKL 222


>gi|310643413|ref|YP_003948171.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309248363|gb|ADO57930.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa SC2]
          Length = 236

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 92/230 (40%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V++DD   +          +   +  F+S +       + R D   ++  +   G   L
Sbjct: 4   IVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTNRPDCLVLDIMMP--GIDGL 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +R  +++P+I IS        +   + G  D + KP + RE++ RV A+ R  K 
Sbjct: 62  SLLTQLREFTEMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLRLSKA 121

Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
             + ++             G + +F+D R   V G    L  RE  +L +L  +  +   
Sbjct: 122 GASASDDKQAAEGANLCHAGNLCIFADFRKVTVDGRAVNLTSREFDLLLFLANHLERPFG 181

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           +  +   ++  +D   +  VV+  + ++RKKL        +++    GY 
Sbjct: 182 REHLIQQVW-SYDFIGDVRVVDDLVKRIRKKLAEYHSTLVINTVWGFGYK 230


>gi|258545920|ref|ZP_05706154.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
 gi|258518798|gb|EEV87657.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
          Length = 225

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 11/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D  ++ +   A   D   +++            +S   D+  ++  L  K    L
Sbjct: 3   ILLAEDDRMIGEAVHAGLKDAAYAVDWVKDGAMALRAAASENYDLILLDLGLPKK--DGL 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++   +R ++  P++ ++    L + L   D G DD + KP    E+LAR+ A+ RR   
Sbjct: 61  DVLAELRQNAATPVLILTARDDLDSRLRGLDGGADDYLIKPFELAELLARMRAVLRRHGQ 120

Query: 122 --SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +NN  + G I +     +      GE   L  RE  IL  LM   G  +++ ++    
Sbjct: 121 HSANNELDNGIITLNPATHEARRHDNGETRQLTAREYTILHALMQRPGHILSRAELEDKT 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           YG + E VE N ++  I  LRKKL    G D + + R +G+ +
Sbjct: 181 YG-WGEEVESNAIDYLIHALRKKL----GADSIRNVRGVGWCV 218


>gi|220928581|ref|YP_002505490.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998909|gb|ACL75510.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 224

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 98/222 (44%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +  G          S+    +++ E +   +    +  ++  L        
Sbjct: 3   ILLVEDDAPLAMGIEYALKKQDFSVSIAKNIK-EAYRIFNEEVQLILLDVTLPD--GNGY 59

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +  + +R  S VP+I ++        +   D G DD ++KP+   E+++R+ AI RR K 
Sbjct: 60  DFCKQVRQTSTVPIIFMTALDDEPNVVFGLDIGGDDYISKPVRTSELISRINAIMRRQKQ 119

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           ++     R  +G + V        V  +   L   E ++L  L+ N+GK +++  I   +
Sbjct: 120 TDGLDTGRITSGSVVVEPLKCKVCVNSQEVFLTAVEYKLLLVLLENKGKVMSRNTIIEKL 179

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + +    V+ N +  ++ +LR+K+        +++ R LGY 
Sbjct: 180 WDIDSNFVDYNTLNVYMKRLREKIET-GDEKHIETVRGLGYM 220


>gi|110834226|ref|YP_693085.1| DNA-binding heavy metal response regulator [Alcanivorax borkumensis
           SK2]
 gi|254429959|ref|ZP_05043666.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|110647337|emb|CAL16813.1| DNA-binding heavy metal response regulator, putative [Alcanivorax
           borkumensis SK2]
 gi|196196128|gb|EDX91087.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 222

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ +G  A     G S++   +      L          ++  L       L
Sbjct: 3   LLLVEDDYLLTNGLSAQLEKAGFSVDTARTAREARHLGQQESYRAGILDLGLPD--GNGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +  R H    P++ ++     Q  ++   +G DD + KP    E++AR+ AI RR +
Sbjct: 61  DVLKQWRTHKVSFPVLILTARGDWQDKVNGLKAGADDYLAKPFQTEELIARLHAIVRRSE 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +    G   +  + +      E    L   E R+L  LM+  G+  +K Q+   +Y
Sbjct: 121 GRIMDTLTAGRFELDENRQTLRAGDETEHSLTGTEFRLLRCLMSRPGQVFSKEQLLDQLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
            + D+   ENV+E+++ +LRK     +G D + ++R  GY  D +
Sbjct: 181 SI-DDIPSENVIEAYVRRLRK----LVGPDTIKTRRGQGYLFDAD 220


>gi|148658138|ref|YP_001278343.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570248|gb|ABQ92393.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ DD          L  D G  +    + +    LQ+  +  +  +   +        
Sbjct: 3   ILVADDDLASVKLTSFLLEDAGYKV--IKAYDATGVLQAVEQRSLDLVLLDVGMPKVSGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ R IR  S VP+I ++    LQ  +     G DD + KP    E+LARV A+ RR   
Sbjct: 61  DICRQIRRISDVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRNS 120

Query: 122 ----SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  R   GP+ +           G    L   E R+L YLM N G+ ++ +QI S 
Sbjct: 121 DLVNPVTRISQGPLTLDPIEHTVLFEDGRSVVLTPIEFRLLYYLMQNTGRVLSASQILSK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
           ++G +D   E N+V  +I +LR K+   +     + + R LGY  
Sbjct: 181 VWG-YDYEGESNLVAVYIRRLRAKIEPDIDAPRYIITVRNLGYKF 224


>gi|94495066|ref|ZP_01301647.1| DNA-binding response regulator [Sphingomonas sp. SKA58]
 gi|94425332|gb|EAT10352.1| DNA-binding response regulator [Sphingomonas sp. SKA58]
          Length = 224

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D A +           G   +     E  + L+ +  E+   +    +    +  
Sbjct: 3   ILLIEDDAEMAGFIADALAAQG--QDTVIEAEGRQGLRRAQSENFDVLIVDRMLPDMEGA 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L   +R      P++ ++   +++  +    SG DD + KP    E+ AR+ A+ RR K
Sbjct: 61  QLVSQMRDLGLSEPILMLTSLGAIEDRVKGLASGADDYLVKPFAIAELSARLDALSRRGK 120

Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              ++    G I++    R+   +G+   L  RE  +LE L+  + + V++  +   ++ 
Sbjct: 121 SGLSDTGACGTIKIDRVRREAWREGQRIVLQPREFELLEQLIRQQDQVVSRAMLLEQVW- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F    + N+VE+H+S+LR+KL      DP+ + R +GY +
Sbjct: 180 HFHFDPQTNIVETHMSRLRQKLNAGFDCDPIQTVRGVGYKL 220


>gi|298249642|ref|ZP_06973446.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547646|gb|EFH81513.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 238

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L +D   ++D         G  +   ++      L       +  ++  +       L
Sbjct: 8   ILLAEDEEALRDFVSRNLRARGFEVLEASNGLEAMALWQQEAPHLLILDVMMPR--MDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           E+ + +R  S VP+I ++   S +  +   D G DD + KP    E+LARV A  RR   
Sbjct: 66  EVCQRVRQSSTVPIIILTALDSERDKVATLDLGADDYLTKPFGVEELLARVRAALRRTNW 125

Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    +N    G + V   G    ++GE   L   E  +L+ L+ N GK +    +
Sbjct: 126 EETGSLPAVSNAKHFGELEVDLAGHVVRLRGEEIRLSPTEFALLKQLVTNAGKVLTHRML 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +I+G  +   E   +  +I++LR KL  +      + ++  +GY  
Sbjct: 186 LQSIWGP-EYGDEAEYLRVYINRLRHKLETDSANPRYLLTEPGVGYRF 232


>gi|51594428|ref|YP_068619.1| DNA-binding transcriptional regulator CpxR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809460|ref|YP_653376.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis
           Antiqua]
 gi|108813937|ref|YP_649704.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis
           Nepal516]
 gi|145601072|ref|YP_001165148.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis
           Pestoides F]
 gi|150260864|ref|ZP_01917592.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis CA88-4125]
 gi|153948260|ref|YP_001399085.1| CpxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162420224|ref|YP_001604719.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis Angola]
 gi|165926059|ref|ZP_02221891.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936215|ref|ZP_02224784.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011510|ref|ZP_02232408.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213694|ref|ZP_02239729.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398994|ref|ZP_02304518.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418962|ref|ZP_02310715.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426656|ref|ZP_02318409.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468392|ref|ZP_02333096.1| transcriptional regulatory protein CpxR [Yersinia pestis FV-1]
 gi|170026339|ref|YP_001722844.1| DNA-binding transcriptional regulator CpxR [Yersinia
           pseudotuberculosis YPIII]
 gi|186893415|ref|YP_001870527.1| DNA-binding transcriptional regulator CpxR [Yersinia
           pseudotuberculosis PB1/+]
 gi|218927293|ref|YP_002345168.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis CO92]
 gi|229836187|ref|ZP_04456355.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis Pestoides A]
 gi|229839923|ref|ZP_04460082.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842005|ref|ZP_04462160.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904466|ref|ZP_04519577.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis Nepal516]
 gi|270488465|ref|ZP_06205539.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294502177|ref|YP_003566239.1| two component system response regulatory protein [Yersinia pestis
           Z176003]
 gi|27544276|dbj|BAC54911.1| transcription factor [Yersinia pseudotuberculosis]
 gi|51587710|emb|CAH19310.1| two component system response regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777585|gb|ABG20104.1| two component system response regulatory protein [Yersinia pestis
           Nepal516]
 gi|108781373|gb|ABG15431.1| two component system response regulatory protein [Yersinia pestis
           Antiqua]
 gi|115345904|emb|CAL18763.1| two component system response regulatory protein [Yersinia pestis
           CO92]
 gi|145212768|gb|ABP42175.1| two component system response regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149290272|gb|EDM40349.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis CA88-4125]
 gi|152959755|gb|ABS47216.1| transcriptional regulatory protein CpxR [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353039|gb|ABX86987.1| transcriptional regulatory protein CpxR [Yersinia pestis Angola]
 gi|165915829|gb|EDR34437.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921919|gb|EDR39096.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989656|gb|EDR41957.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205096|gb|EDR49576.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962956|gb|EDR58977.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051498|gb|EDR62906.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054345|gb|EDR64162.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752873|gb|ACA70391.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186696441|gb|ACC87070.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229678584|gb|EEO74689.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis Nepal516]
 gi|229690315|gb|EEO82369.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696289|gb|EEO86336.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706635|gb|EEO92641.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis Pestoides A]
 gi|262360256|gb|ACY56977.1| two component system response regulatory protein [Yersinia pestis
           D106004]
 gi|262364203|gb|ACY60760.1| two component system response regulatory protein [Yersinia pestis
           D182038]
 gi|270336969|gb|EFA47746.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294352636|gb|ADE62977.1| two component system response regulatory protein [Yersinia pestis
           Z176003]
 gi|320013426|gb|ADV96997.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 232

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G ++    + + E+ L          +   ++ + +  +
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFNV--VVAYDGEQALSQLDSSIDLLLLDIMMPR-KNGI 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R H Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 61  ETLKELRQHHQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S  +          E   +++    ++   +G+   L   E  +L  L  + G+ V++  
Sbjct: 121 SEQQQNAEQGAPTLEVDCLQLNPGRQEASFEGQPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   K G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPDRKDGLPWFKTLRGRGY 226


>gi|332534928|ref|ZP_08410748.1| putative transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035663|gb|EGI72153.1| putative transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 234

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 96/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +         + G +    +  +       +   ++  ++  L   G+  +
Sbjct: 7   ILLVEDDASLAQWVAEYLTEQGYTTHVCHRGDEVVSKVKTLNPNIVLLDIMLP--GQDGI 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117
            + R +R+    P+I ++        +   + G  D + KP+  R +LAR+ A  R    
Sbjct: 65  SVCRELRSFYNSPIIMLTARDEEMDEVIGLEVGASDYIMKPVRPRALLARIKAALRQNNE 124

Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             + +VS +  + G + + ++ R+  +  +   +   E  +L YL +N G+ V++  +F 
Sbjct: 125 PNKPQVSQSIIQVGALSINTESRNVTLNEQDINISSAEYLLLHYLASNAGQVVSRDAVFK 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           A  G  +    +  V+  IS LRKK   +    + + +    GY +
Sbjct: 185 ATKGR-EYDGLDRSVDVLISALRKKFNDDPQNPEKIKTIWGRGYLL 229


>gi|313884757|ref|ZP_07818512.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620018|gb|EFR31452.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Eremococcus coleocola ACS-139-V-Col8]
          Length = 232

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 96/230 (41%), Gaps = 15/230 (6%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           +++DD   + +       ++   + + F+ +E  + +  +   D+  ++  +  K    L
Sbjct: 4   LVVDDEKEIVELLTIYLKNESYDVLQAFDGVEALDLIAKNDDIDLVLLDIMMPKK--NGL 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR      P+I ++   +    +    +G DD V KP +  E++AR+ +++RR +
Sbjct: 62  EVLEEIRKQGLNFPVIFLTAKATDTDKITGLFAGADDYVAKPFNPLEVIARIKSLFRRQQ 121

Query: 121 VSN--------NRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
           + N        ++ E G I +  D      + G+   L   E  IL  L  +  +  +  
Sbjct: 122 LLNQPPQAKDTSKVEVGSITIEKDSHTVTTLSGQDVQLTGSEFDILYLLATHLNQVFSAE 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
            I   ++   ++      V  H+S LR KL     G   V +   LGY I
Sbjct: 182 DILQEVWPEGNK-PSSQTVMVHVSHLRDKLEAATNGEKIVKTVWGLGYKI 230


>gi|302874399|ref|YP_003843032.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690997|ref|ZP_07633443.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577256|gb|ADL51268.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 227

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V +   A    +G  +  + +    E ++   + D+  +   L+    +  
Sbjct: 4   ILIIEDEKSVLEVTKAYLEREGYRV--YCAENGLEGIKLFKKNDIQLVILDLMLPDIEGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ +I+R  S+V +  ++   SL   ++  + G D+ + KP+  RE+ ARV A++RR+ V
Sbjct: 62  EVCKILRKISEVYIFMLTAKASLSDKIEGLNIGADEYLIKPLSPRELTARVNALFRRIGV 121

Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              +A       + +    R  ++ G    L   E  IL  L ANRG+   +  I   ++
Sbjct: 122 EEPKALSFSNSHLVINKTDRSVKIDGIEVSLTPNEFDILYLLAANRGRAFTREDIIERVF 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220
              D    +  +++HI  LRKK+         + +   +GY  
Sbjct: 182 -TMDFEGSDRTIDAHIKNLRKKIEENSKEPRYILTVTRIGYKF 223


>gi|161521632|ref|YP_001585059.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352202|ref|YP_001947829.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221210801|ref|ZP_03583781.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|160345682|gb|ABX18767.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189336224|dbj|BAG45293.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221169757|gb|EEE02224.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
          Length = 221

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +     +     G +++          L    R D+  ++A L   G    
Sbjct: 3   ILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLP--GLDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR  
Sbjct: 61  AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +    R  E+ G+   L R+E  +LE L +   +  +K ++ + ++ 
Sbjct: 121 GHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKDELLNQLF- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F      N VE +++++RKKL+       + + R +GY I
Sbjct: 180 SFGNEPSANAVEQYVTRVRKKLQ--GSSVEIRTARGMGYQI 218


>gi|16803100|ref|NP_464585.1| hypothetical protein lmo1060 [Listeria monocytogenes EGD-e]
 gi|47096149|ref|ZP_00233749.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes str. 1/2a F6854]
 gi|224500297|ref|ZP_03668646.1| hypothetical protein LmonF1_11754 [Listeria monocytogenes Finland
           1988]
 gi|224502626|ref|ZP_03670933.1| hypothetical protein LmonFR_08914 [Listeria monocytogenes FSL
           R2-561]
 gi|254828437|ref|ZP_05233124.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL N3-165]
 gi|254830171|ref|ZP_05234826.1| hypothetical protein Lmon1_02380 [Listeria monocytogenes 10403S]
 gi|254898767|ref|ZP_05258691.1| hypothetical protein LmonJ_03090 [Listeria monocytogenes J0161]
 gi|254911744|ref|ZP_05261756.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes J2818]
 gi|254936070|ref|ZP_05267767.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes F6900]
 gi|284801392|ref|YP_003413257.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578]
 gi|284994534|ref|YP_003416302.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923]
 gi|16410462|emb|CAC99138.1| lmo1060 [Listeria monocytogenes EGD-e]
 gi|47015498|gb|EAL06431.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes str. 1/2a F6854]
 gi|258600833|gb|EEW14158.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL N3-165]
 gi|258608660|gb|EEW21268.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes F6900]
 gi|284056954|gb|ADB67895.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578]
 gi|284060001|gb|ADB70940.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923]
 gi|293589695|gb|EFF98029.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes J2818]
          Length = 220

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 10/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D + +     A   + G  +    +      L      D+  ++  +        
Sbjct: 4   ILIAEDDSAILGVITAFLTEAGYQVMTAKNGIEAYHLFQKETFDLIIMDIMMPS--MDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L  +IR+ S  P++ ++        L  FD G DD + KP  +  +L RV  + RR+  
Sbjct: 62  TLTELIRSTSTTPILMMTALSEEDDELKGFDLGADDYIQKPFSYLVLLKRVQVLLRRVNQ 121

Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S  +      G I V ++  +    GE   L ++E  IL  L+ N+ K + +  I S  +
Sbjct: 122 SETKKQILRCGNISVDTETFEVISAGETIELTKKEFDILVLLIKNQKKVITREMILSQAW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             F   V+ +++ +H+  LRKKL      + + + R  GY +D
Sbjct: 182 D-FAAIVDTSIINTHMKNLRKKL----HTEKIQTIRGAGYKMD 219


>gi|297562775|ref|YP_003681749.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847223|gb|ADH69243.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 222

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   + +        +G +++   ++   E L  +   D+  +   L       LE
Sbjct: 5   LLAEDDVSISEPLARALRREGYTVDV--TVNGVETLDRARAGDIDLMVLDLGLPEMDGLE 62

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RA     P++ ++       T+   D+G DD V KP    E+LARV A+ RR   
Sbjct: 63  VARRLRAEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR--G 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                    +R+ +D R   +      L  +E  +L  L+ + GK V + QI   ++   
Sbjct: 121 GAEVPVVHGVRIDNDSRRAWLGERELQLTTKEFDLLRVLVRDAGKVVTREQIMREVWDT- 179

Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
           +       ++ HIS LR+KL  +      + + R +G+  +
Sbjct: 180 NWWGSTKTLDMHISWLRRKLGDDANQPSYITTVRGVGFRFE 220


>gi|228936548|ref|ZP_04099344.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948983|ref|ZP_04111256.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810739|gb|EEM57087.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823136|gb|EEM68972.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 206

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 15/209 (7%)

Query: 24  VSLEGFNSLEFEEWLQSSAR----EDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGI 78
           + +EG+  L   +  ++  R     DV  ++  L        EL R+ R     +P++ +
Sbjct: 3   LEMEGYEVLTAADGREALERWNEGPDVLILDVMLPDT--DGYELLRLFREKDRDIPVLML 60

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAETGPIRV 133
           +    +   L     G DD V KP ++ E++ RV  + RR+K     VS+   E G I +
Sbjct: 61  TAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVKKKEVTVSHEVIEAGEITI 120

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
               R   V G+   L  RE  + +  ++N  +   + ++   ++G F+       V+  
Sbjct: 121 CPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKVWG-FEYIGNTRAVDIM 179

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +LRKKL N    + + +   +GY +D 
Sbjct: 180 VQRLRKKLGNSG--EYIKTIYGVGYKLDC 206


>gi|146300629|ref|YP_001195220.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146155047|gb|ABQ05901.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 220

 Score =  208 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 96/218 (44%), Gaps = 5/218 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         ++G  +   N       L  +   D+  ++  L       L
Sbjct: 3   ILIVEDELGIVQFLEQGLREEGYQITTANDGSKGFELTQNHTFDLILLDWMLP--KINGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L + IR    + P+I ++   ++Q T++   +G +D + KP    E++ RV   + R K
Sbjct: 61  DLCKAIRIKDKKTPIIFLTAKDTVQETIEGLRAGANDYIKKPFSFEELVERVKIHF-RNK 119

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            ++     G I V           E   L +RE  +L YL+  +GK   + +I   ++ +
Sbjct: 120 ATDEILTLGNITVDLSKHIVLKNDEEINLTQREFELLTYLIRKKGKVCTRNEILKDVWDI 179

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
            +   +  V++  ++ +RKKL  K+  D + + R +GY
Sbjct: 180 -NFEYDTGVIDVFMNAIRKKLNLKIEEDYIKTIRGIGY 216


>gi|218963158|gb|ACL13308.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  IILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPE--LNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR +
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
            +N           I + +D     +  E    +  L   E +I+ +++    K   + +
Sbjct: 132 FANKATNKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|260777352|ref|ZP_05886246.1| two-component response regulator CreB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607018|gb|EEX33292.1| two-component response regulator CreB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 229

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            V+I+D   + D  I +   DG     F++          +   +  ++  L        
Sbjct: 7   IVIIEDEPAIADNLIHVLEMDGYQPAWFSTAGEGLTFMKQSEPALLVLDVGLPD--GNGF 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RRL 119
           EL + IR  S VP+I ++        +   + G DD V KP   RE+LAR+      R  
Sbjct: 65  ELCKTIREFSDVPIIFLTARNDEIDRVVGLEIGADDYVTKPFSPREMLARIKLRIKSRPT 124

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +   +     + +D  D  V G+   L   E +IL  L+A     +++ Q+  A   
Sbjct: 125 TIQSANEQAIEDDLKADNFDYSVDGQPLGLTAVEFKILNRLIAVSSSVLSREQLMLAA-D 183

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +   A  E  ++SHI  +R KL+     D + +KR  GY  D
Sbjct: 184 MTPHASYERNIDSHIKAIRNKLKPFSMADRICTKRGFGYYFD 225


>gi|302554937|ref|ZP_07307279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472555|gb|EFL35648.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 238

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   + D    +   +G   E   +   E+ L+ +A      +   L+  G    
Sbjct: 12  LLVVDDDPPIADLVATVARYEGW--EAVTAYSGEDALRRAADFHPDIVVLDLMLPGVDGF 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            +   +RA    VP++ ++    +   +     G DD + KP    E++AR+  + RR  
Sbjct: 70  GVLDRLRASGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 129

Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                 +    G + +  D R+     ++  L   E  +L YLM      + K QI   +
Sbjct: 130 GPAFQRSVLRVGDLTMDEDTREVRRGDKLLSLTPTEYEVLRYLMRKSPTVLTKAQILDHV 189

Query: 178 YGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220
           +  +      NVVE  +S+LR+KL   +      + + R  GY +
Sbjct: 190 W-EYGFGGRSNVVELVVSRLRRKLDETDDGAAPLIHTVRGFGYVL 233


>gi|330811233|ref|YP_004355695.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379341|gb|AEA70691.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 240

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 10/223 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        +G+ +              + + D+  ++  L   GE  L 
Sbjct: 9   LIVEDDQRLAELTREYLESNGLRVAIEGDGAVAAARIIAEQPDLVVLDLMLP--GEDGLS 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R H   P++ ++        +   D G DD V KP+  R +LAR+ A+ RR +  
Sbjct: 67  ICRKVRGHYDGPILMLTARTDDTDQIQGLDLGADDYVCKPVRPRLLLARIQALLRRSEPE 126

Query: 123 ------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   R + GP+ V    R+  +QG    L   E  +L  L++N G+ +++ +IF+A
Sbjct: 127 PSVAQKQRRLQFGPLVVDDALREAWLQGNGIELTSAEFDLLWLLVSNAGRILSREEIFTA 186

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218
           + G+     ++  ++  IS++R K+ +       + + R  GY
Sbjct: 187 LRGIG-YDGQDRSIDVRISRIRPKIGDDPDHPRLIKTIRSKGY 228


>gi|255531093|ref|YP_003091465.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255344077|gb|ACU03403.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 225

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +        G +G ++E        E        D   ++  L   G    
Sbjct: 3   ILIVEDEKNLGLEMADFLGKEGYTIEHAWKKASAEEKIFVNSYDFILLDLGLP--GGDGF 60

Query: 62  ELPRIIRAHSQVP-----LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116
           EL   ++    +P     +I ++    +   +   ++G DD + KP    E+LAR+ AI 
Sbjct: 61  ELLHQLKK---MPGREDAVIILTARGEVDDRIKGLEAGADDYLAKPFSLTELLARMHAII 117

Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           RR  K+  N        +         +G+   L  +E  I  YL+ N+ + +++  +  
Sbjct: 118 RRKHKLERNEVNVHDFILDIKNHQVSFEGKRVNLTNKEFEIFNYLVLNKNRVISRVNLTE 177

Query: 176 AIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            ++G + +   + N V+ H+  LRKKL      +  ++ R +GY I++
Sbjct: 178 HVWGDILEVNSDSNFVDVHVKNLRKKLTAYATINWFETVRSIGYRINF 225


>gi|332300440|ref|YP_004442361.1| two component transcriptional regulator, winged helix family
           [Porphyromonas asaccharolytica DSM 20707]
 gi|332177503|gb|AEE13193.1| two component transcriptional regulator, winged helix family
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 233

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 15/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60
            +L+DD   +++        +G  +    +   EE L+       +  ++  +   G   
Sbjct: 8   LLLVDDEEDLREILTFNLAGEGYQVS--TAANAEEALKMPLEEYHLLILDVMMP--GMSG 63

Query: 61  LELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            +L  +IR   +   P+I ++   +    L  F+ G DD + KP   +E+ AR+ AI  R
Sbjct: 64  FKLAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQAILMR 123

Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                L    ++ E G + +  D +   + GE   L ++E  IL  L  +  K  ++ +I
Sbjct: 124 SLQGGLDFEESQIEIGTLLIDLDAKQVFINGEPIDLTKKELEILILLARDPSKVFSREEI 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              I+   D  V E  ++ HI+++RKKLR       + ++   GY +
Sbjct: 184 LDRIW-REDVFVMERTIDVHITRIRKKLRGSGIK--IINRSGFGYCL 227


>gi|327190838|gb|EGE57903.1| two component winged helix family transcriptional regulator
           [Rhizobium etli CNPAF512]
          Length = 228

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 95/224 (42%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD A +         ++G  +             +    D+  ++  +       +E
Sbjct: 5   LLIDDDAELTTLLQEYLVEEGYDVVTDTDGRAAIAAAAGNTVDIIVLDIMMPR--MNGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
           + + IR  SQVP++ ++        +   + G DD V KP    E+ AR+ AI RR    
Sbjct: 63  VLQRIRKLSQVPVLMLTARGDDVDRISGLNLGADDYVPKPCSPGELAARLRAILRRAGQP 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              VS +    G + + S  R  E +GE   L   E  +LE L  + G+ V+K +I    
Sbjct: 123 AAGVSTDTIRAGQLVIHSGSRSAEWRGEALELTGTEFSLLEVLARSAGQLVSKQEISKRA 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G      +   ++ HIS +R+KL   + G   + S R  GY +
Sbjct: 183 FGKPLTPFDRR-IDVHISSVRQKLGLREDGQSWIQSVRGQGYQL 225


>gi|226953146|ref|ZP_03823610.1| DNA-binding heavy metal response regulator [Acinetobacter sp. ATCC
           27244]
 gi|294650734|ref|ZP_06728085.1| DNA-binding heavy metal response regulator [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226836116|gb|EEH68499.1| DNA-binding heavy metal response regulator [Acinetobacter sp. ATCC
           27244]
 gi|292823380|gb|EFF82232.1| DNA-binding heavy metal response regulator [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 237

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 8/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         D G  ++   +L+            +  ++  L        
Sbjct: 14  ILMVEDHYELASTVCEFLEDHGFVIDHARNLDAARQFLKQQPYHLLLLDINLPD--GSGY 71

Query: 62  ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           EL   +R      +P++ ++   +L   L  F SG DD + KP    E++ R+ A+ +R 
Sbjct: 72  ELCEWLRTERGLDIPVLMLTARDTLDDKLKGFASGTDDYLVKPFDFNELVVRIRALIKRA 131

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             +VSN++ +   + + S  +     G++  LP  + ++L+ LM N  K ++K +I   +
Sbjct: 132 MGEVSNSKLQIHDLVLDSATQQITRAGKIIDLPPIQFKLLKILMRNSPKVISKQEIVMEL 191

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
           +G  DE  E + + SHI  LRK +        + +   +G
Sbjct: 192 WG--DEEPESDALRSHIYNLRKMVDKPFEQKLIHTVSGVG 229


>gi|326789239|ref|YP_004307060.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540003|gb|ADZ81862.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 219

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 13/223 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59
            ++++D   + +      G  G +     N LE  E L  S   D+  ++  L    G  
Sbjct: 4   ILVVEDEIAINELVRRNLGLVGHTCYSAMNGLEALE-LIKSKNVDLVILDIMLPKLDGFG 62

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           VLE  +        P I ++   +++  +     G DD + KP    E+LARV A+ RR 
Sbjct: 63  VLEQMK------DTPTILLTAKSNVEDRVKGLVMGADDYIIKPFEMLELLARVEAVLRRT 116

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +   +  E   ++V    R   ++G++     +E  +LE L+ NR   +++ ++   I+G
Sbjct: 117 RKEEDVFEVKEVKVEFGSRKIYLRGKLVDCTPKEYELLEVLIKNRNVALSREKLLEMIWG 176

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
            +D   E   V+ HI +LRKKL  +     + +   LGY ++ 
Sbjct: 177 -YDYMGETRTVDVHIQRLRKKLELEGQ---IATVYKLGYRLEV 215


>gi|154492635|ref|ZP_02032261.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC
           43184]
 gi|154086940|gb|EDN85985.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC
           43184]
          Length = 228

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 102/227 (44%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFL-IGKGEK 59
            +++DD   + +        +G  ++   +   EE L    A   +  ++  +    G K
Sbjct: 6   ILVVDDEEDLCEILKFNLEIEGYEVD--TAFSAEEALKMDIASYQLLLLDVMMGEISGFK 63

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +  + +     + +P+I ++   +    L  F+ G DD ++KP   R+++ARV A+ RR 
Sbjct: 64  MASILKKEEKTADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVLRRT 123

Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                   N   +   + + +      V G+  PL ++E  IL+ L+ N+G   ++ +I 
Sbjct: 124 SDKEKVPENECLKYETLSLDTKRIKASVDGQEVPLTKKEFEILKLLLENKGNVFSREEIL 183

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           S I+   +  V +  ++ +I++LRKK+        + ++   GY  +
Sbjct: 184 SRIW-KDEVYVLDRTIDVNITRLRKKIGPYGKN--IVTRLGFGYCFE 227


>gi|49081910|gb|AAT50355.1| PA4381 [synthetic construct]
          Length = 228

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLP--GIDGY 60

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L R +R  A    P+I ++    L   L  F SG DD + KP    E+ AR+ A+ RR 
Sbjct: 61  ALCRRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    R      +    D  + +  G+   L     ++L  LM      V +  +  A++
Sbjct: 121 QGGGRRELSVADLSYDLDTLEVKRAGKSLKLNPIGLKLLAVLMQKSPHVVRRDALEEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFSVALLHTVHGVGYRL 220


>gi|325264701|ref|ZP_08131430.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029993|gb|EGB91279.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 232

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 53/230 (23%), Positives = 102/230 (44%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   +      +   DG  +++ F+  E +  L+  A  D+  ++  L   G   
Sbjct: 6   ILIVEDDTDINHLLHRILMQDGYDTIQAFSGTEAKLLLRLEA-PDLILLDLMLP--GMSG 62

Query: 61  LELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            EL   +R      +P++ +S    L+T +    +G DD + KP   +E+LARV A  RR
Sbjct: 63  EELIVTVREEMGLDLPILVLSAKAGLETKVAALKNGADDYLTKPFEPQEVLARVYAALRR 122

Query: 119 LKVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            K+   + E          + +  D R  E+ G+  PL   E  IL  L+ +  K  ++ 
Sbjct: 123 YKIEAGKTEKETAFYTYKKLNLHPDSRKAEISGQELPLTMHEYDILYLLIKDPEKVYSRE 182

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++  ++       E+N V  H+S LR+KL       + + +   +G+ +
Sbjct: 183 NLYEQVW-KGGYYGEDNTVNVHVSNLRRKLSAADPEEEYIRTVWGIGFKM 231


>gi|330811056|ref|YP_004355518.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379164|gb|AEA70514.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 252

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++  I       +   G            +   DV  ++  L   GE  L+
Sbjct: 26  LIVDDDVPIRELLIDYLARFSIRASGVTDGAAMRQAMQAEHFDVIVLDLMLP--GEDGLQ 83

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +RA S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 84  LCRWLRAESDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDD 143

Query: 123 NNR----AETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +           R+ S  R      G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 144 RSEQRANIRFDNWRLNSVLRQLISADGLVVPLSNAEFRLLWVFIERPRRVLSREQLLDAA 203

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL  +      + + R  GY  D
Sbjct: 204 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKAPQLIKTVRGEGYLFD 247


>gi|326801440|ref|YP_004319259.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326552204|gb|ADZ80589.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 227

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 101/226 (44%), Gaps = 7/226 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +          +    E  F++ E  E L      D   ++  L       
Sbjct: 3   ILVIEDNKELASSIHDYLAGENYICELAFSATEAREKLLFFT-YDCIILDIMLPD--GNG 59

Query: 61  LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           LEL  +++  H    ++ IS   +L   +   + G DD + KP H  E+ AR+ AI+RR 
Sbjct: 60  LELLNLVKEEHINGSILIISAKGALDDKIKGLEEGADDYLTKPFHLPELHARLRAIHRRK 119

Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  NN      I + ++  + ++ G+     R+E  +L Y + N+ + +++  I + ++
Sbjct: 120 NLDGNNIISFKEITLNTNTFELKIHGKALDATRKEFELLLYFLVNKNRVLSRQAIANHLW 179

Query: 179 GLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           G + D     + V  H+  LRKK+    G D +D+   LGY  + N
Sbjct: 180 GDYTDNLSNVDFVYQHVKNLRKKINMAGGDDYIDTIYGLGYKFNTN 225


>gi|299139390|ref|ZP_07032565.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598659|gb|EFI54822.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 236

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +        G  G S+   ++ E    L       +  ++  L   G    
Sbjct: 8   LLLIDDDRSLAALITEYCGSGGFSITAADTGEDGIRLAQQQYFLLIILDVMLP--GIDGF 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R IR  S  P++ ++   + +  +   +SG DD + KP    E+LAR+ +I RR+  
Sbjct: 66  EVLRRIRYSSNTPILMLTTRGAAKDRIHGLESGADDYLPKPFQPEELLARIQSILRRVHP 125

Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             N A    G + V +  R   ++     L   E  +L+ L++  G   ++ ++   I+G
Sbjct: 126 RENLASFTLGDLTVNNLERSITLEDRPLDLTGAEFHLLKVLLSQPGMAFSREELVHRIFG 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
             + +  +  V++ ++ LRKKL     G D   S R +GY 
Sbjct: 186 R-EPSGLDRSVDNLVNNLRKKLGAHANGKDRFKSIRNVGYC 225


>gi|167760996|ref|ZP_02433123.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
 gi|167661375|gb|EDS05505.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
          Length = 225

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 100/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++       D G  +    +             D+  ++  L        
Sbjct: 4   ILIIEDDLDIQEMLQFFLEDQGYQVLAAENGIDGVTAFRKGNPDLILLDIMLP--KMDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +  +IR  S++P+I IS   S +  L  F+  +DD + KPI    ++ ++ A+ RR + 
Sbjct: 62  TVCEMIRQESEIPVIMISALGSEEDQLKGFELQIDDYIPKPISLPIMMKKIEAVIRRYEN 121

Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + +  D    +V  +   L ++E  IL+ L+ N+G+ +++    + +
Sbjct: 122 KGLEKKEELHYKEMTLMVDNYRVKVGKKDINLTQKEYEILKELLENQGRVISRDSFLNRL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++   EE  V++HI  LRKKL +    + +++ R +GY ++
Sbjct: 182 W-RYEYVGEERAVDNHIKNLRKKLGDAG--NYIETVRGVGYRVE 222


>gi|90420574|ref|ZP_01228481.1| transcriptional regulatory protein, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90335302|gb|EAS49055.1| transcriptional regulatory protein, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 233

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +         ++G  +E +           S   +++  +  +       +
Sbjct: 4   IALVDDDRNILASVSIALENEGYRVETYTDGASALEGLQSRPPNLAIFDIKMPR--MDGM 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 62  ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDYIRKPFSQRLLVERVRAILRRGAP 121

Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                    V  +  E G + +  +       G    L   E  IL  L    G   ++ 
Sbjct: 122 REAAKPGGPVPESSLERGQLVMDQERHTCTWTGHPVTLTVTEFLILHSLAQRPGVVKSRD 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     FD +++   +GY  
Sbjct: 182 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAIDDDFDMIETLYGVGYRF 230


>gi|86749084|ref|YP_485580.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86572112|gb|ABD06669.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 240

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 93/229 (40%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +        ++   +         +   S  R D+  ++  L   GE  L
Sbjct: 8   ILVVEDDRETRALIAKYLRNNECHVVTAQDGREMDSRLSDQRVDLVVLDVMLP--GEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA S +P+I ++        +   + G DD + KP + RE+LAR+ ++ RR  +
Sbjct: 66  SLCRRVRASSPLPIIMLTARGEDVDRILGLEMGADDYLAKPFNPRELLARIRSVLRRQSL 125

Query: 122 SNNRAETG--------PIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           +   + T           R+    R+     G +  +   E  +L+      G+ +++  
Sbjct: 126 AQTASATSGATALTFLGWRIDFRLRELRNPDGALVAMTSAEFDLLQAFCERPGRVLSREA 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +    +G  +    E  ++  +S++R+K+  +      + + R  GY  
Sbjct: 186 LLDLTHGR-NAGSFERSIDVLVSRIRRKIEPDPQSVSIIKTVRSGGYMF 233


>gi|70729143|ref|YP_258879.1| OmpR family DNA-binding response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343442|gb|AAY91048.1| DNA-binding response regulator, OmpR family [Pseudomonas
           fluorescens Pf-5]
          Length = 254

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   +++  I       +   G            +   DV  ++  L   GE  L 
Sbjct: 28  LIVDDDVPIRELLIDYLARFNIHASGVTDGAAMRQALQAEHFDVVVLDLMLP--GEDGLS 85

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L R +R  S +P++ ++        +   + G DD + KP   RE++AR+  I RR++  
Sbjct: 86  LCRWLRTESDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDD 145

Query: 123 NNR----AETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            +           R+ S  R      G V PL   E R+L   +    + +++ Q+  A 
Sbjct: 146 RSEQRANIRFDNWRLNSVLRQLISADGLVVPLSNAEFRLLWVFIERPRRVLSREQLLDAA 205

Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221
            G   EA +   ++  +S+LR+KL  +      + + R  GY  D
Sbjct: 206 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKSPQLIKTVRGEGYLFD 249


>gi|302530020|ref|ZP_07282362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438915|gb|EFL10731.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 227

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G                   + D+  ++  L   G   ++
Sbjct: 8   LVVDDDPALAEMLTIVLRGEGFDTAVVADGSRALPALRELKPDLVLLDLMLP--GMNGID 65

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + + IRA S VP++ ++        +   +SG DD V KP   +E++ARV A  RR +  
Sbjct: 66  VCKAIRAESGVPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARMRRTEAE 125

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                  G + +   G +    G+  PL   E  +L  L     +   +  +   ++G +
Sbjct: 126 PAESLTIGDLAIDVPGHEVTRDGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 184

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 185 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGYK 223


>gi|160901586|ref|YP_001567167.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359230|gb|ABX30844.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 224

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++     +       + + D+  ++  L  +     
Sbjct: 4   ILVVEDDKAISRLLELELTHVGYNVKIAKDGDEALKFYENFKPDIILLDIMLPIR--DGF 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+   IR + S + +I I+    L++ +    +  DD V KP    EILAR+ A+ +R+ 
Sbjct: 62  EVAEAIRDYDSDIGIIMITAKGELESKVKGLKN-ADDYVVKPFEIEEILARIEALLKRMG 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +    + G I ++    +  V  +   L   E  IL+ L  N+   V+K +I   I+G 
Sbjct: 121 KTKELIKVGDIEIYPQNMEVLVNKKNVHLSLTEFNILKLLAINKNIVVSKEKILEEIWGY 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +DE    N+VE +I+ LRKKL++      +++ R +GY I
Sbjct: 181 YDEE-NNNLVEVYINYLRKKLKDSTQN--IETVRGVGYVI 217


>gi|78063615|ref|YP_373523.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. 383]
 gi|77971500|gb|ABB12879.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. 383]
          Length = 223

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 96/221 (43%), Gaps = 4/221 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +         +   +++   + +   +L      D+  ++  L        
Sbjct: 3   ILIVEDEPKMASYLRKGLMEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPE--MDGF 60

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120
           E+ + +RA  Q P++ ++   +++  +   + G DD + KP  + E LAR+ ++ RR  +
Sbjct: 61  EVLKRLRAQKQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
              +      + V    R          L  +E  +L+ L    G+ + +T I S I+ +
Sbjct: 121 NVRDILHVADLEVDLIRRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            +   + NVV++ I +LR K+ N      + + R +GY ++
Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNTYEKKLIHTIRGMGYVLE 220


>gi|305666817|ref|YP_003863104.1| response regulator DrrA [Maribacter sp. HTCC2170]
 gi|88709041|gb|EAR01275.1| response regulator DrrA [Maribacter sp. HTCC2170]
          Length = 232

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 99/229 (43%), Gaps = 10/229 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         D  +      +++ ++ L  +   +   I   L       +
Sbjct: 4   ILIIEDDPEIIKLLEIHLTD--LIYTTAKAMDGQQGLNMALENNYDLILLDLTLPTLDGV 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ + +RA    P+I ++        +   + G DD + KP   RE+LARV A+ RR  +
Sbjct: 62  EICKKLRAVKNTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVLRRTDI 121

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              + E         + +  D R   ++ +   L  +E  +L  + +N G+   +T++ +
Sbjct: 122 KETKKENTASIHAEGLFIDIDKRKVLLEDDKIELSPKEFELLVLMASNPGRNYTRTELLN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223
            I+G ++    E+ V SHI++LR K+ +       + +   +GY  + +
Sbjct: 182 IIWG-YNFEGYEHTVNSHINRLRAKIESDMTHPTFILTTWGVGYKFNED 229


>gi|324014608|gb|EGB83827.1| transcriptional regulatory protein OmpR [Escherichia coli MS 60-1]
          Length = 239

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            + +DD   ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILGVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ S  +P+I ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G  ++    R+   + E  PL   E  +L+ L+++  + +++ +
Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|319941522|ref|ZP_08015849.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804996|gb|EFW01835.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
          Length = 256

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 95/243 (39%), Gaps = 27/243 (11%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +++  + +   +G       S+       ++ R D+  ++  L  +  + 
Sbjct: 5   LLLIVEDELAIQELIVFVCEAEGFRTTRAGSIAEARSALAAERPDLILLDRMLPDRPGE- 63

Query: 61  LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------- 108
            E  R +R     + VP+I ++   +    +   D+G DD V KP   RE+         
Sbjct: 64  -EWLRELRSDAKTADVPVIILTARGNESDRVAGLDAGADDYVVKPFLPRELTARVRAVLR 122

Query: 109 ---LARVAAIY--------RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157
               A +A                       GP+++     +    G+   L  +E ++L
Sbjct: 123 RRGAAVIAGRLSPMPSEETASTADEERVIVCGPLKLNEARFEATAAGKPLKLSAKEFKLL 182

Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217
               A  G+  ++  +  A++      V+E  V+ H+ +LRK L      D +++ R +G
Sbjct: 183 SLFAAKPGRVFSRANLLDAVWQS--AFVDERTVDVHMLRLRKALAGSAAEDMIETVRGVG 240

Query: 218 YSI 220
           Y  
Sbjct: 241 YRF 243


>gi|307294458|ref|ZP_07574300.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306878932|gb|EFN10150.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 236

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 11/228 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++        + G  +   +S         +   D+  ++  L   G   +
Sbjct: 6   IILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPVDLVVLDVMLP--GTNGI 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +L R IR  S VP+I IS   S    +   + G DD + KP   RE++AR+ AI RR+ V
Sbjct: 64  DLCRQIRRKSDVPIIFISAKGSETDRIVGLELGADDYLPKPFGTRELIARIRAILRRVGV 123

Query: 122 S-------NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                    N A      V    R+     G V  L   E  +L   +++  + +A+ ++
Sbjct: 124 ERGPDEHRENEARFDGWVVNFPRRELRSPTGAVVDLTGAEFDLLGSFLSHPQRVIARERL 183

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
              +         +  ++  +S+LR+KL       P+ + R +GY  +
Sbjct: 184 IE-LSRTRMGDSSDRSIDVLVSRLRRKLTTDDRSAPITTVRGVGYMFN 230


>gi|296112612|ref|YP_003626550.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295920306|gb|ADG60657.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326560872|gb|EGE11237.1| two-component system response regulator [Moraxella catarrhalis
           7169]
 gi|326563890|gb|EGE14141.1| two-component system response regulator [Moraxella catarrhalis
           46P47B1]
 gi|326566562|gb|EGE16708.1| two-component system response regulator [Moraxella catarrhalis
           12P80B1]
 gi|326566899|gb|EGE17038.1| two-component system response regulator [Moraxella catarrhalis
           103P14B1]
 gi|326569771|gb|EGE19821.1| two-component system response regulator [Moraxella catarrhalis BC8]
 gi|326570802|gb|EGE20827.1| two-component system response regulator [Moraxella catarrhalis BC1]
 gi|326575098|gb|EGE25026.1| two-component system response regulator [Moraxella catarrhalis
           CO72]
 gi|326576816|gb|EGE26723.1| two-component system response regulator [Moraxella catarrhalis
           101P30B1]
 gi|326577731|gb|EGE27607.1| two-component system response regulator [Moraxella catarrhalis
           O35E]
          Length = 237

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +                + D+  ++  L   G   L
Sbjct: 11  ILIVEDDERLAMLTQDYLRKNGLDVAIETDGARAIRRIIGEQPDLVVLDVMLP--GSDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R +RAH Q P++ ++        +   + G DD V KP+  R +LAR+ A+ RR   
Sbjct: 69  AVCREVRAHYQQPILMLTARTDDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRSDT 128

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S  R E G + + + GR   +  E+      E  +L  L +N G+ +++  IF  
Sbjct: 129 VPSDTSPQRLEFGDLVIDNGGRSVTLNDELVDFTSAEYDLLWLLASNAGRILSREDIFER 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           + G+ +   ++  ++  IS++R K+ +       + + R  GY
Sbjct: 189 LRGI-EYDGQDRSIDVRISRIRPKIGDDSENPKRIKTVRSKGY 230


>gi|240146754|ref|ZP_04745355.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257201091|gb|EEU99375.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|291535944|emb|CBL09056.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291538436|emb|CBL11547.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 12/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +      L   +G  +    + +  + L+  A + V  +   ++      L
Sbjct: 5   ILVVDDDREIVRAIAILLEKEGYQV--LKAYDGMQALELIAEQKVHLVIMDVMMPKLDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
                IR    +P+I +S        +     G DD V KP + +E+ ARV +  RR   
Sbjct: 63  SAVLKIRERKNIPIIVLSAKSEDTDKVLGLSMGADDYVAKPYNPQELAARVKSHLRRYTS 122

Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             +            G +   ++ R   V  E   L   E +I+E LM   G+     +I
Sbjct: 123 LGDIHKADDDGCITNGRLEFHTNERVLYVDKEPVRLTATETKIMELLMKYPGRVFPAEEI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           +  ++     A E N V  HI ++R+K+  N    + +     +GY I+
Sbjct: 183 YERVWNEQGYACE-NTVMVHIRRIREKIELNPKEPEYLKVVWGIGYKIE 230


>gi|153000445|ref|YP_001366126.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160875042|ref|YP_001554358.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|151365063|gb|ABS08063.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160860564|gb|ABX49098.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315267274|gb|ADT94127.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 219

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 10/221 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+  G        G+ ++  NS  +++ LQ    E  SAI   L        
Sbjct: 3   IMLVEDNELLAQGICLSLAKLGMQVDHLNS--YQQALQGVKNESFSAIVLDLGLPDGNGK 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           +L +  R     +P I ++      T L+  D G DD + KP   RE+ AR+ AI RR  
Sbjct: 61  DLLKAWRQQGVSIPTIVLTANTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQY 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            + +N    G + +  + R+   + +   L RRE ++L  L  + G+ + ++Q+    YG
Sbjct: 121 GLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLELAQSAGRVLTRSQLEQLTYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              + V  N +E HI  LRKKL N    + + + R +GY++
Sbjct: 181 W--DEVGSNSIEVHIHHLRKKLAN----ELIKTVRGIGYTL 215


>gi|329927719|ref|ZP_08281831.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328938297|gb|EGG34690.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 231

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++I+D   +      +  + G   +  F+  E   +L +     +  ++  L   G   
Sbjct: 7   ILVIEDDNEINQLLCEIITNSGYVPQPVFSGTEALLYLANDREWSMVLLDLMLP--GLAG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+ R +    ++P+I IS     Q+ +     G DD + KP    E+ AR+    RR +
Sbjct: 65  EEILRKLGPDRRLPVIIISAKNEQQSKVAVLRMGADDYITKPFDVEEVAARLDIHLRRYR 124

Query: 121 VSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +       +     I + SD +   V G    L  RE  +LE LM+   K   K  +F 
Sbjct: 125 RAAEPDLIRQLTYKDIHLDSDTKAVTVNGSGVVLTAREFTVLELLMSYPKKVFTKQNLFE 184

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
           A++G      ++N +  H+S LRKKL       + +++   +GY +
Sbjct: 185 AVWGDA-YLGDDNTITVHMSNLRKKLAQANPEAEYIETIWGMGYRL 229


>gi|239625973|ref|ZP_04669004.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239520203|gb|EEQ60069.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 224

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 103/220 (46%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D    +    A+   +G +    +S E    L  S   D++ ++  +   G    
Sbjct: 4   ILIAEDDKNTRKLMEAVLKSNGFNPIPASSGEEALKLLDSHHIDLAVLDIMMP--GMDGY 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL   +R+    +P++ ++     +     F +G DD + KP+   E++ R+ A+ RR +
Sbjct: 62  ELTTQLRSMDYNLPILMVTAKLLPEDKRKGFMAGTDDYMTKPVDEEEMVLRIRALLRRAQ 121

Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +++ R    G + +  D       G    LPR+E  +L  L++  GK   + Q+   I+G
Sbjct: 122 IASERKITIGNVILDYDSLSVTRDGSSQTLPRKEFYLLYKLLSYPGKIFTRIQLMDEIWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + +   ++N +  HI++LRK+  +   F  +++ R LGY 
Sbjct: 182 I-ESETDDNTINVHINRLRKRFEHYPEF-TIETIRGLGYK 219


>gi|167622181|ref|YP_001672475.1| osmolarity response regulator [Shewanella halifaxensis HAW-EB4]
 gi|167352203|gb|ABZ74816.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 241

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R     +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQMGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 PEVPGAPTLQEEEITFGEYSLNLATREMYHGEESISLTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233


>gi|157373309|ref|YP_001471909.1| osmolarity response regulator [Shewanella sediminis HAW-EB3]
 gi|157315683|gb|ABV34781.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 241

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R     +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQS 125

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 QDVPGAPTQQEEEITFGEFALNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|299536972|ref|ZP_07050277.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727552|gb|EFI68122.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 230

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++ DD   ++DG      ++G  +    + +  + L+     +V  I   ++      + 
Sbjct: 7   LVTDDDQDIRDGIEIYLKNEGYHV--IKAADGLDALKKLENNEVHLIILDIMMPNMDGIT 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118
               IR    +P+I +S        +     G DD V KP H  E+LARV +  RR    
Sbjct: 65  ATFKIREERNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQL 124

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                   + E   + +  + ++  ++GE   L   E +I E LM N G+  +  +I+  
Sbjct: 125 GTYSEGATKVEIDGLVLDEEAKEVVLEGEPVRLTPIEYKITELLMKNAGRVFSIREIYER 184

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++       E N+V  HI K+R+K+  +      +     +GY ++
Sbjct: 185 VWNEEAYNAE-NIVAVHIRKIREKIEADPKNPRYLKVVWGVGYKME 229


>gi|302549204|ref|ZP_07301546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302466822|gb|EFL29915.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 247

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 17/230 (7%)

Query: 3   VLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KG 57
           +++DD   + D   A    +G    ++ +G  +LE  +        D   ++  L    G
Sbjct: 24  LVVDDEPDLTDVLGAALRSEGWEVRIACDGAGALEAADGF----HPDAVVLDWMLPDTDG 79

Query: 58  EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117
             VL   R  R   QV ++ ++   +++  +    +G DD V KP    E+LAR+  + R
Sbjct: 80  LGVLHALR--RRIPQVCVLFLTARDAVEDRIAGITAGGDDYVTKPFALEEVLARLRGLVR 137

Query: 118 RLKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
           R  +S      R     + +  + R+    G +  L R E  +L +LM N  + ++K QI
Sbjct: 138 RAGMSREADAPRLVVADLVMDEEAREVTRSGRIVELSRTEFELLRFLMRNPRRVLSKEQI 197

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
              ++  +D     +VVE +IS LRKK+ +      + + R +GY +  +
Sbjct: 198 LDRVW-SYDFGGRAHVVELYISYLRKKI-DAGQAPLIHTVRGVGYVLKQD 245


>gi|197121352|ref|YP_002133303.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171201|gb|ACG72174.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 231

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 8/224 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D A V+    A     G  +E   ++   E L      DV  ++  L       
Sbjct: 7   LVLVVEDEAPVRRFLRAALAAHGYRIEEAGTVAEAEQLAPGHNPDVFLLDLGLPD--GDG 64

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++L R +R  ++ P+I +S     +  +   D+G DD + KP    E+LAR+    R  +
Sbjct: 65  IDLARRLREWTRAPIIVLSARGREEDKVTALDAGADDYLTKPFGVNELLARLRVALRHAQ 124

Query: 121 VSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
              +     E GP+R+    R+    G    L   E R+L  L  N GK +   QI   +
Sbjct: 125 APPDGPPVVEVGPLRIDLARREITRSGAEVRLTPTEYRVLAMLARNAGKVLTHRQILREV 184

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +G    A E + V   +++LRKKL ++      + ++  +GY +
Sbjct: 185 WGPN--ATEAHYVRVQVAELRKKLEDEPARPRLLMTEPGVGYRL 226


>gi|152991455|ref|YP_001357177.1| two-component response regulator [Nitratiruptor sp. SB155-2]
 gi|151423316|dbj|BAF70820.1| two-component response regulator [Nitratiruptor sp. SB155-2]
          Length = 220

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 13/221 (5%)

Query: 5   IDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           I+D   + +         G+ +E +         L      D   ++  L   G   LE+
Sbjct: 6   IEDDVELAEILSEFLERYGIEVENYEDPFIALSALHLDNTYDALILDLTLP--GMDGLEI 63

Query: 64  PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123
            + +R  S +P+I  S    L   +   + G DD + KP   +E+ AR+ AI RR     
Sbjct: 64  LKKLREFSDIPIIISSARSDLSDKVIGLELGADDYLPKPYDPKELEARLKAILRRRAKPQ 123

Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF---SAIYGL 180
            + ++    ++ + R+    G+   L   E  IL YL+    + +++  +      +   
Sbjct: 124 TKEQS--FTLYPNRREIHFHGKPLQLTPAEFEILSYLIERPNQPISREDLLYNCEHL--- 178

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             E   +  V+  IS++R KL  N      + S R +GY  
Sbjct: 179 -SENASDKTVDVIISRIRHKLGENPKQPKHIQSVRGVGYKF 218


>gi|153855773|ref|ZP_01996774.1| hypothetical protein DORLON_02793 [Dorea longicatena DSM 13814]
 gi|149751900|gb|EDM61831.1| hypothetical protein DORLON_02793 [Dorea longicatena DSM 13814]
          Length = 221

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 9/222 (4%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKVLE 62
           +I+D  L+         + G   +  ++   +E L + +  E +  I+  L       L 
Sbjct: 5   IIEDDTLLHQALKTALQNAGY--QTVSAYTKQEALTTITGSESLLLIDIGLPD--GNGLA 60

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
             + IR  +++P I ++        L  FD+G DD V KP   + +L R+ A+  R    
Sbjct: 61  CYKKIREKAEIPAIFLTARDEETDMLTAFDTGADDYVVKPFSMKVLLKRIEAVIGRNNR- 119

Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182
             +   G I +F D +      +   L  RE ++LEYLM N+G  + K  I   ++GL  
Sbjct: 120 EKQLACGEIILFPDKKQVYKNEKEIILTAREYQLLEYLMYNQGNVLTKENILEYVWGLDG 179

Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSIDW 222
           + V +N V   I++LRKK+    G  P+   +   LGY ++ 
Sbjct: 180 QFVVDNTVSVTINRLRKKIETDAGS-PIYLKNVFGLGYKLEC 220


>gi|149190173|ref|ZP_01868448.1| transcriptional regulator [Vibrio shilonii AK1]
 gi|148835920|gb|EDL52882.1| transcriptional regulator [Vibrio shilonii AK1]
          Length = 219

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 103/225 (45%), Gaps = 18/225 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE---EWLQSSAREDVSAIEAFLIGKGE 58
            +L++D   + DG +         L G+N L  E   +  Q     D+  ++  L   G+
Sbjct: 5   LLLVEDDKNLADGLLVSLE-----LAGYNCLHAEFISQVEQHWEEADLVILDRQLPD-GD 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            V E     +    VP+I ++   +++  +   D+G +D + KP    E+ AR+ A  R 
Sbjct: 59  SV-EHLAGWKKIKDVPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRA 117

Query: 119 LKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +       +  T  + +    R+   +GE+  L R E  +L +L +N G+   + ++  
Sbjct: 118 PEADTEDATKVVTESLVIDKATREVNYKGELITLTRTEFDLLLFLASNLGRVFTRDELLD 177

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++G ++       V++H+ +LR+KL    G + +++ R +GY +
Sbjct: 178 HVWG-YNHFPTTRTVDTHVLQLRQKL---PGLE-IETLRGVGYKM 217


>gi|53725411|ref|YP_103471.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
           23344]
 gi|121601439|ref|YP_992428.1| DNA-binding response regulator KdpE [Burkholderia mallei SAVP1]
 gi|124384159|ref|YP_001026769.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
           10229]
 gi|126451092|ref|YP_001079946.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
           10247]
 gi|126455264|ref|YP_001065533.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1106a]
 gi|134283888|ref|ZP_01770584.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 305]
 gi|226195325|ref|ZP_03790914.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811540|ref|YP_002895991.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei MSHR346]
 gi|238562097|ref|ZP_04609887.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           mallei GB8 horse 4]
 gi|242317232|ref|ZP_04816248.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1106b]
 gi|251767304|ref|ZP_02266740.2| DNA-binding response regulator KdpE [Burkholderia mallei PRL-20]
 gi|254181223|ref|ZP_04887820.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1655]
 gi|254195197|ref|ZP_04901626.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei S13]
 gi|254260507|ref|ZP_04951561.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1710a]
 gi|254359896|ref|ZP_04976166.1| DNA-binding response regulator KdpE [Burkholderia mallei
           2002721280]
 gi|52428834|gb|AAU49427.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
           23344]
 gi|121230249|gb|ABM52767.1| DNA-binding response regulator KdpE [Burkholderia mallei SAVP1]
 gi|124292179|gb|ABN01448.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
           10229]
 gi|126228906|gb|ABN92446.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1106a]
 gi|126243962|gb|ABO07055.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
           10247]
 gi|134244677|gb|EBA44775.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 305]
 gi|148029136|gb|EDK87041.1| DNA-binding response regulator KdpE [Burkholderia mallei
           2002721280]
 gi|169651945|gb|EDS84638.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei S13]
 gi|184211761|gb|EDU08804.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1655]
 gi|225932527|gb|EEH28525.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503786|gb|ACQ96104.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei MSHR346]
 gi|238523332|gb|EEP86771.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           mallei GB8 horse 4]
 gi|242140471|gb|EES26873.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1106b]
 gi|243063242|gb|EES45428.1| DNA-binding response regulator KdpE [Burkholderia mallei PRL-20]
 gi|254219196|gb|EET08580.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1710a]
          Length = 234

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           VLI+D   ++    +   ++G+++    +        ++ + D++ ++  L       L+
Sbjct: 11  VLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPD--GDGLD 68

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R  S++P+I +S     +  +   D+G DD + KP    E+LAR+ A  RR   +
Sbjct: 69  VIRELRGWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQA 128

Query: 123 ----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +     G + V    R     GEV  L   E R+L  L+ + G+ +   Q+   ++
Sbjct: 129 GAAESPVVRFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 188

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G        + +  +++ LR+KL  +      + ++  +GY +
Sbjct: 189 GPTHVE-SHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRL 230


>gi|150018489|ref|YP_001310743.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904954|gb|ABR35787.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 226

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             +I+D   + +       + G  ++  N+         +   D+  ++  L  K     
Sbjct: 5   ISIIEDDLEICNLLREFLKESGYEIKISNTGIDGMRELRTLTYDLVILDLMLPYK--SGD 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           E+ R +R+ S +P+I +S    + T +D    G DD V KP    EILARV +  RR   
Sbjct: 63  EILRELRSFSNIPVIVLSAKDMVHTKVDLLRLGADDYVTKPFDLNEILARVESNLRRCSS 122

Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
            L +  +      I ++ + +   V G    L  +E  IL  L+++  K  +K  +F +I
Sbjct: 123 DLNIKKSILTYKDITLYEEEKKVIVNGNTLVLTSKEYGILFLLLSHPQKVFSKANLFESI 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +   +   E+N +  HIS +R KL++     + +++   +GY +
Sbjct: 183 WNE-EYFSEDNTLNVHISNIRNKLKSANANEEYIETIWGMGYKL 225


>gi|325526746|gb|EGD04261.1| two-component system signal transduction response regulator
           [Burkholderia sp. TJI49]
          Length = 232

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           VLI+D   ++    A   ++ +++    + +      ++ + D+  ++  L       L+
Sbjct: 9   VLIEDEKQIRRFVRAALEEEYIAVFEAETGKQGLIDAATRKPDLVIVDLGLPDT--DGLD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R  S+VP+I +S     +  +   D+G DD + KP    E+ AR+ A  RR    
Sbjct: 67  VIRELRGWSEVPVIVLSARTQEEEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRNQG 126

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + +   G + V    R     GE+  L   E R+L  L+ + G+ +   Q+   ++
Sbjct: 127 GANESPKVSFGTVSVDLALRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G        + +  +++ LR+KL R+    + + ++  +GY +
Sbjct: 187 GPSHVE-SHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|317057519|ref|YP_004105986.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449788|gb|ADU23352.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 107/221 (48%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A ++    A    +G     F + +  E L    + ++  I + ++       
Sbjct: 4   ILVVEDDASLRRLMSAALKQNGYQP--FTASDGIEALDMLEKTNIDLIISDIMMPNMDGY 61

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL R +R A+ Q+P+I ++   S +     FD+G DD + KPI   E++ RV A+ +R K
Sbjct: 62  ELTRQLRNANFQMPIIMVTAKESFEDKKIGFDAGTDDYMVKPIDINEMILRVGALLKRSK 121

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             S +    G   +  D +     G+    +P+ E ++L  L++   K   + Q+   ++
Sbjct: 122 LASEHTMTVGNCVLDYDAQTVAFDGQQGETIPQMEFKLLFKLLSYPNKIFTRRQLLDELW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           G+ D+ V+E  V+ HI +LR++  +   F  + + R LGY 
Sbjct: 182 GM-DKDVDERTVDVHIKRLRERYGSAEAFS-IVTVRGLGYK 220


>gi|256370488|ref|YP_003107999.1| DNA-binding response regulator BvrR, putative [Brucella microti CCM
           4915]
 gi|256000651|gb|ACU49050.1| DNA-binding response regulator BvrR, putative [Brucella microti CCM
           4915]
          Length = 239

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +  +       +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPR--MDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR+  
Sbjct: 68  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +             E G + +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 128 RDGTAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 ALMDAAYDE-QIYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236


>gi|168212863|ref|ZP_02638488.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715642|gb|EDT27824.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 232

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 16/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++     F  +G  +   +       +       +  ++  L        
Sbjct: 5   ILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPD--ISGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +   +   +I ++    +   +   + G DD + KP   RE +ARV    RR + 
Sbjct: 63  DVCRELNKLNAN-IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKEK 121

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +    GPI++    R   +  E   L  +E  +L Y + N    +++ Q
Sbjct: 122 FLKESNKSTVKDEFIIGPIKIKRQSRKVYLNEEEVRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G  +   +   V+ H+ +LR+KL N    + +++   LGY  
Sbjct: 182 ILDGVWG-DEYFGDFRTVDVHVRRLRQKLNN---EEIIETIFGLGYMF 225


>gi|59710721|ref|YP_203497.1| osmolarity response regulator [Vibrio fischeri ES114]
 gi|59478822|gb|AAW84609.1| OmpR DNA-binding osmolarity response regulator in two-component
           regulatory system with EnvZ [Vibrio fischeri ES114]
          Length = 239

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+ + + P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQV 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSAEDKMIEFGEFRLNLGTREMFRNEEPMPLTSGEFAVLKSLVTNMREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMIEEDPSRPRYIQTVWGLGYVF 232


>gi|311105062|ref|YP_003977915.1| transcriptional regulator TctD 3 [Achromobacter xylosoxidans A8]
 gi|310759751|gb|ADP15200.1| transcriptional regulatory protein TctD 3 [Achromobacter
           xylosoxidans A8]
          Length = 229

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D +++ DG       +G +++        +   ++   D+  ++  L       L
Sbjct: 3   ILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAAQAFDLLILDLGLPQ--LAGL 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
           E+ R +RA  S +P++ ++   S++  +   D G DD + KP    E+ ARV A+ RR  
Sbjct: 61  EVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  + G +     GR   V  +   L  RE  +LE L+   G+ V+KTQ+   +  
Sbjct: 121 GGGATMIKHGRLLFDQTGRVAMVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDHLC- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + E V  N +E ++ +LRKKL        + + R LGY ++
Sbjct: 180 EWGEEVSTNAIEVYVHRLRKKLEPSGVK--IVTVRGLGYCLE 219


>gi|148547607|ref|YP_001267709.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148511665|gb|ABQ78525.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 253

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 16/233 (6%)

Query: 1   MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58
           M   +L+DD   + +        +G      ++ E  E    S    V  ++  L   G 
Sbjct: 21  MIPVLLVDDDRELTEMLSLYLAREGFQAMAVDTGEEGETQALSGNFQVVVLDVMLP--GI 78

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
             +E+ R +RA SQVP++ ++        +   + G DD V KP    E++AR+ AI RR
Sbjct: 79  SGIEVLRRVRARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRR 138

Query: 119 LKVS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168
           +K              +  +G ++++   R+         L   E  +LE L    G+ V
Sbjct: 139 VKPHLMGDTSAPEVPEQVRSGALKMWPGRREARWGTATLELTGSEFSLLEVLARQAGQLV 198

Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
           +K  +     G      +   ++ H+S +R+KL     G   + S R +GY +
Sbjct: 199 SKQDLSLNALGRPLTRYDRR-IDVHVSSIRQKLGPRADGSSWIQSVRGMGYML 250


>gi|127511517|ref|YP_001092714.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126636812|gb|ABO22455.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 224

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 12/224 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D  L+ D         G   +  +     ++L      D   ++  L       L
Sbjct: 3   LLLVEDNTLLVDELAKQLKQAGYVTDVTDRAAEADYLIKETHYDCVILDIGLPD--GNGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +L    R      P+I ++        ++ F++G DD + KP H +E+LAR+ A+  R  
Sbjct: 61  QLLETWRNQGIDTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHSQELLARIHALINRAH 120

Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              N          + +    +   V  + F L   E R+L+  + +  K ++K Q+   
Sbjct: 121 GKTNSPTKELSFEGVTLDESQQSVTVGEQQFELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +Y  FD+  E NVVE +++ LRKKL    G   ++++R  GY  
Sbjct: 181 LY-QFDDEKESNVVEVYVTHLRKKL----GKTAIETRRGQGYIF 219


>gi|150392407|ref|YP_001322456.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149952269|gb|ABR50797.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 218

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 8/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D         G +       E  E L+   +   S I   ++       
Sbjct: 4   ILIVEDEQSINDLIAMNLELVGHTST--QVYEGNEALEFIKQNTYSLIILDIMLPELDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   +     +P+I ++   +L   +     G DD + KP    E+LAR+ A+ RR + 
Sbjct: 62  SLMEYVPE--NIPVIFLTAMGNLSDRVKGLKLGADDYIVKPFETIELLARIEAVLRRTQR 119

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
           S N        V  + R   V G+   L  RE  +LE L+ NR   +++ ++    +  +
Sbjct: 120 SLNIFSLDSTVVNLESRVVTVNGDEIELTLREYELLEILIKNRNIALSREKLLKLAW-EY 178

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           D   E   V+ HI KLRKKL      + + +   +GY ++ +
Sbjct: 179 DYFGETRTVDVHIQKLRKKLNW---ENKIKTVYKMGYRLEVD 217


>gi|53719705|ref|YP_108691.1| osmolarity response regulator [Burkholderia pseudomallei K96243]
 gi|53723644|ref|YP_103129.1| osmolarity response regulator [Burkholderia mallei ATCC 23344]
 gi|76812107|ref|YP_333899.1| osmolarity response regulator [Burkholderia pseudomallei 1710b]
 gi|83719808|ref|YP_442618.1| osmolarity response regulator [Burkholderia thailandensis E264]
 gi|167563113|ref|ZP_02356029.1| osmolarity response regulator [Burkholderia oklahomensis EO147]
 gi|167570297|ref|ZP_02363171.1| osmolarity response regulator [Burkholderia oklahomensis C6786]
 gi|167581552|ref|ZP_02374426.1| osmolarity response regulator [Burkholderia thailandensis TXDOH]
 gi|167586924|ref|ZP_02379312.1| osmolarity response regulator [Burkholderia ubonensis Bu]
 gi|167619667|ref|ZP_02388298.1| osmolarity response regulator [Burkholderia thailandensis Bt4]
 gi|167720066|ref|ZP_02403302.1| osmolarity response regulator [Burkholderia pseudomallei DM98]
 gi|167739078|ref|ZP_02411852.1| osmolarity response regulator [Burkholderia pseudomallei 14]
 gi|167816290|ref|ZP_02447970.1| osmolarity response regulator [Burkholderia pseudomallei 91]
 gi|167824672|ref|ZP_02456143.1| osmolarity response regulator [Burkholderia pseudomallei 9]
 gi|167836959|ref|ZP_02463842.1| osmolarity response regulator [Burkholderia thailandensis MSMB43]
 gi|167846202|ref|ZP_02471710.1| osmolarity response regulator [Burkholderia pseudomallei B7210]
 gi|167894783|ref|ZP_02482185.1| osmolarity response regulator [Burkholderia pseudomallei 7894]
 gi|167903182|ref|ZP_02490387.1| osmolarity response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167911414|ref|ZP_02498505.1| osmolarity response regulator [Burkholderia pseudomallei 112]
 gi|167919428|ref|ZP_02506519.1| osmolarity response regulator [Burkholderia pseudomallei BCC215]
 gi|189350738|ref|YP_001946366.1| osmolarity response regulator [Burkholderia multivorans ATCC 17616]
 gi|206560374|ref|YP_002231138.1| osmolarity response regulator [Burkholderia cenocepacia J2315]
 gi|221198232|ref|ZP_03571278.1| DNA-binding response regulator OmpR [Burkholderia multivorans
           CGD2M]
 gi|254189208|ref|ZP_04895719.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254200083|ref|ZP_04906449.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH]
 gi|257138831|ref|ZP_05587093.1| osmolarity response regulator [Burkholderia thailandensis E264]
 gi|52210119|emb|CAH36097.1| oxidative stress related two component system, transcriptional
           regulator [Burkholderia pseudomallei K96243]
 gi|52427067|gb|AAU47660.1| DNA-binding response regulator RisA [Burkholderia mallei ATCC
           23344]
 gi|76581560|gb|ABA51035.1| RisA protein [Burkholderia pseudomallei 1710b]
 gi|83653633|gb|ABC37696.1| DNA-binding response regulator RisA [Burkholderia thailandensis
           E264]
 gi|147749679|gb|EDK56753.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH]
 gi|157936887|gb|EDO92557.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           Pasteur 52237]
 gi|189334760|dbj|BAG43830.1| two-component system osmolarityresponse regulator [Burkholderia
           multivorans ATCC 17616]
 gi|198036415|emb|CAR52311.1| oxidative stress related two-component regulatory system, response
           regulator protein [Burkholderia cenocepacia J2315]
 gi|221182164|gb|EEE14565.1| DNA-binding response regulator OmpR [Burkholderia multivorans
           CGD2M]
          Length = 241

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 14/212 (6%)

Query: 20  GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGI 78
           G+ G ++    +      L    R D+  ++  L   GE  L + R +R ++ + P+I +
Sbjct: 27  GEQGFNVYVAENATAMNKLWVRERFDLLVLDLMLP--GEDGLSICRRLRGSNDRTPIIML 84

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---------NRAETG 129
           +        +   + G DD + KP + RE++AR+ A+ RR   +             E G
Sbjct: 85  TAKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFG 144

Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189
              +    R     G+  PL   E  +L+    +  + +++ ++     G  +  V +  
Sbjct: 145 EFSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGR-EYEVFDRS 203

Query: 190 VESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++  IS+LRK +  +      + +   LGY  
Sbjct: 204 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 235


>gi|319407929|emb|CBI81583.1| transcriptional regulator BatR [Bartonella schoenbuchensis R1]
          Length = 240

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            VL+DD   +          +G  +E +          +     ++  +  +       +
Sbjct: 11  IVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPR--MDGM 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV AI RR   
Sbjct: 69  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRSNA 128

Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            N    T          G + +  +      +     L   E  IL+ L    G   ++ 
Sbjct: 129 RNQALLTGTSPASSLKRGDLVMDQERHTCTWKNRPVILTVTEFLILQTLAQRPGVVKSRD 188

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F  +++   +GY  
Sbjct: 189 ALMDAAYN-DQVYVDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRF 237


>gi|317506815|ref|ZP_07964589.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254889|gb|EFV14185.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 228

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+D        +G S+    +           R D   ++  +   G   L
Sbjct: 3   ILVVDDDRAVRDSLRRSLSFNGYSVRTAENGIEALSQILEDRPDAMVLDVMMP--GLDGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           E+ R +R +   +P++ ++   ++   +   D+G DD + KP    E+LARV A+ R   
Sbjct: 61  EVCRRLRGSGDDLPILVLTARDTVSERVAGLDAGADDYLPKPFALEELLARVRALLRRRT 120

Query: 118 -RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +L+          + +    RD         L R E  +LE LM N  + + +T++   
Sbjct: 121 PQLEPGVEALTFQDLSLDPATRDVRRGEREISLTRTEFALLEMLMENPRRVLTRTRLLEE 180

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++G +D     N +E +I  LR+K   +     + + R +GY +
Sbjct: 181 VWG-YDFPTSGNALEVYIGYLRRKTEAEGENRLIHTVRGVGYVL 223


>gi|227819853|ref|YP_002823824.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227338852|gb|ACP23071.1| probable two-component response regulator protein [Sinorhizobium
           fredii NGR234]
          Length = 228

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 9/224 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +LIDD   +         ++G  +             +    D+  ++  +       +E
Sbjct: 5   LLIDDDVELTTLLQEYLAEEGYDVATDTDGRAAIAAAAGNSVDIIVLDIMMPR--MNGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119
           + + IR  SQVP++ ++        +   + G DD V KP    E+ AR+ AI RR    
Sbjct: 63  VLQRIRKLSQVPVLMLTARGDDVDRISGLNLGADDYVPKPCSPGELAARLRAILRRASQS 122

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
               S +  + G + +    R  E  GE   L   E  +LE L  N G+ V+K  I    
Sbjct: 123 VVGTSTDTLKAGRLVMHPGNRTAEWLGEPLELTGTEFSLLEVLARNAGQLVSKQDISKRA 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +G      +   ++ HIS +R+KL   + G   + S R  GY +
Sbjct: 183 FGKPLTPFDRR-IDVHISSVRQKLGLREDGQSWIQSVRGQGYQL 225


>gi|320107596|ref|YP_004183186.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319926117|gb|ADV83192.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 243

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 104/221 (47%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD   +         + G S+  F++L  EE ++ + +     I   ++  G    
Sbjct: 15  LLLIDDDQSLASLIAEYCAEAGFSI--FSALSGEEGIRVAKQHSFQMIILDVMLPGIDGF 72

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + +R  S VP++ ++   +    +   D G DD + KP    E++AR+  I RR   
Sbjct: 73  DVLQRLRQFSTVPVLMLTTRGAAMDRVRGLDGGADDYLAKPFQPEELVARIKTILRRSSP 132

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
               ++   G + +    R  + +G V  L   E  +L+ L++  G+ + + ++   I+G
Sbjct: 133 KEMCSKYVVGDLEIDEVARSVKRKGIVLELTGAEFHLLKLLLSQPGEPMPREELIPRIFG 192

Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219
               +++   +++ ++ LRKKL  +  G + + S R +GYS
Sbjct: 193 REPGSLD-RSIDNLVNNLRKKLGEHAEGKERIKSIRNVGYS 232


>gi|168205907|ref|ZP_02631912.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170662604|gb|EDT15287.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 232

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 16/228 (7%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++     F  +G  +   +       +       +  ++  L        
Sbjct: 5   ILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKDFNPSLVILDLMLPD--ISGF 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
           ++ R +   +   +I ++    +   +   + G DD + KP   RE +ARV    RR + 
Sbjct: 63  DVCRELNKLNAN-IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKEK 121

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +    GPI++    R   +  E   L  +E  +L Y + N    +++ Q
Sbjct: 122 FLKESNKSTVKDEVIIGPIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           I   ++G  +   +   V+ H+ +LR+KL N    + +++   LGY  
Sbjct: 182 ILDGVWG-DEYFGDFRTVDVHVRRLRQKLNN---EEIIETIFGLGYMF 225


>gi|94967540|ref|YP_589588.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549590|gb|ABF39514.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +           G  +   N  E    +      D+   +  +       L
Sbjct: 5   ILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIMKDWVPDLVITDISMPN--MDGL 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L + +RA SQVP+I +S     +T +   D G DD + KP +  E+LAR+ A  RR  V
Sbjct: 63  ALCKELRARSQVPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANLRRAPV 122

Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +      E G   + +     +V+G    L  +E  +L YL  + GK V    + S+++G
Sbjct: 123 AEIATILELGDFVIDTAAHLVKVRGTEVRLTPKEFDLLLYLARHPGKVVPHRTLLSSVWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             D A +   +   + +LRKK+  +      + ++R++GY  
Sbjct: 183 A-DHAEQSEYLRVFVGQLRKKIEGENSNKRYILTERWIGYRF 223


>gi|29346400|ref|NP_809903.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568200|ref|ZP_04845611.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|29338296|gb|AAO76097.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842273|gb|EES70353.1| two-component system response regulator [Bacteroides sp. 1_1_6]
          Length = 228

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 8/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V    +    ++G              L  +   D+   +  L        
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHTFDLVISDIVLP--KMDGF 61

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           EL + IR  + ++P++ ++   S    LD FD+G DD + KP   RE+ AR+  + +R+ 
Sbjct: 62  ELTKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVS 121

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
            +            +R+    +D E       L  +E  +L Y++ N  + +++ +I   
Sbjct: 122 GNVPELPQELVYADLRIDLQRKDVERNNVSIKLSPKEYNLLLYMVENAERVLSRVEIAEK 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           ++         N ++ +I+ LRKK+        + +K  +G+ +
Sbjct: 182 VWNTH-FDTGTNFIDVYINYLRKKIDRNFEPKLIHTKAGMGFIL 224


>gi|16767829|ref|NP_463444.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167989832|ref|ZP_02570932.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168262357|ref|ZP_02684330.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194444693|ref|YP_002043830.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197265197|ref|ZP_03165271.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16423155|gb|AAL23403.1| response regulator in two-component regulatory system with CreC
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194403356|gb|ACF63578.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197243452|gb|EDY26072.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205331389|gb|EDZ18153.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205348945|gb|EDZ35576.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|261249668|emb|CBG27539.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267996952|gb|ACY91837.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301161067|emb|CBW20604.1| putative two-component response regulator [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312915682|dbj|BAJ39656.1| response regulator CreB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222443|gb|EFX47515.1| Two-component response regulator CreB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323132929|gb|ADX20359.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332991394|gb|AEF10377.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 229

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 8/222 (3%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63
           L++D   + D  I     +G ++E F             R D   ++  L        EL
Sbjct: 8   LVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPD--ISGFEL 65

Query: 64  PRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
            R +   H  +P++ ++        L   + G DD V KP   RE+ ARV  + RR+K  
Sbjct: 66  CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRRVKKF 125

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              +    TG   +          G    L R E  +L+ L+ +  +  ++ Q+   ++ 
Sbjct: 126 AAPSPVVRTGHFELNEPAAQIAWFGTPLSLTRYEFLLLKTLLLSPERVYSRQQLMDIVWS 185

Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
              E  +   V++HI  LR KLR       P+++ R +GYS+
Sbjct: 186 DAQETFD-RTVDTHIKTLRAKLRAINPELSPINTHRGMGYSL 226


>gi|300855144|ref|YP_003780128.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435259|gb|ADK15026.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 226

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 92/228 (40%), Gaps = 14/228 (6%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +++    +  +   +++   + +  E L+      +  I   ++      
Sbjct: 5   VVLIVDDDENIRELLTIMLKNQ--NIDSLCAKDGIEALEILKSNKIDLILLDVMMPRMDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +     IR    +P+I +S        +     G DD + KP +   ++A++ +  RR K
Sbjct: 63  MMACMKIRESLNLPIIILSAKVDDADKIMGLTIGADDYIAKPFNSMLLIAKIRSHLRRYK 122

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
             N+         +   + +  D    ++      L   E +IL +L  N+   ++  QI
Sbjct: 123 EFNSNFHDNSSLIKIQDMLINMDKHTVKIDNSEINLTPHEFKILAFLAKNKDNVLSIKQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           +  ++       +   V  HI +LR+KL+     D + +   +GY I+
Sbjct: 183 YENVWEEPYMEFD-RTVTVHIRRLRQKLK----KDYIKTVWGVGYKIE 225


>gi|255523345|ref|ZP_05390315.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188278|ref|ZP_06856670.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255512999|gb|EET89269.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047404|gb|EFG86846.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 231

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 93/232 (40%), Gaps = 19/232 (8%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGE 58
            ++ +D   + +        D + L  F     ++  E L      +   +   ++    
Sbjct: 4   ILIAEDDLSIAE-----LQRDYLELSEFEVKICMDGVETLNCLKENEFDLLILDIMLPKI 58

Query: 59  KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
               + R I+    +P++ +S        +  F+ G DD + KP    E++ARV +  + 
Sbjct: 59  DGFSILRSIQDTKDIPILIVSSKKEEIDKIKGFNLGADDYITKPFSPAELVARVKSHIKN 118

Query: 119 LKVSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169
            +   N+ +            + +  D R+  V  +   L ++E  +L Y+  N  +  +
Sbjct: 119 YERIKNKFDSNKKSDTILIRGLEIRKDSREVFVNCKEVTLAQKEFDLLLYMSENPNRVFS 178

Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + ++F  ++GL D   + + V  HI ++R+K   +      +++    GY I
Sbjct: 179 REELFEKVWGL-DAIGDTSTVTVHIGRIREKTEASPSNPQYIETVWGAGYRI 229


>gi|86146553|ref|ZP_01064875.1| osmolarity response regulator [Vibrio sp. MED222]
 gi|218708219|ref|YP_002415840.1| osmolarity response regulator [Vibrio splendidus LGP32]
 gi|85835610|gb|EAQ53746.1| osmolarity response regulator [Vibrio sp. MED222]
 gi|218321238|emb|CAV17188.1| Transcriptional regulatory protein ompR [Vibrio splendidus LGP32]
          Length = 239

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 98/229 (42%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R A++ +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQV 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                      +  E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSTEESVVEFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKSLVTNAREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +         + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRLVEEDPSKPRYIQTVWGLGYVF 232


>gi|298251741|ref|ZP_06975544.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297546333|gb|EFH80201.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 231

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD     D       ++   +LE ++ +E    L  S   D+  ++  L   G   
Sbjct: 5   ILVVDDDKKTVDLIRLSLKNEHFETLEAYDGIEA-LALTRSEAPDLIILDWMLPHVG--G 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117
           L+L RI+R  S +P+I ++   +    L   + GVDD + KP   RE++ARV  + R   
Sbjct: 62  LDLCRIVRLESTIPVIMLTAKATEDDKLLGLNLGVDDYLTKPFSLRELVARVRVVLRRTY 121

Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
           R +          + +     +  + G+   L  +E ++LE  + N G+  ++ ++   +
Sbjct: 122 RSEERPATLHFSDLVINVQRHEVWLSGKAIRLTPKEFKLLETFVRNPGRIFSREELVERV 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
            G  +    +  ++ H+  LRKK+         + +   +GY++
Sbjct: 182 CG-SNYDGFDRAIDFHLGNLRKKIDTHSEQPSYIQTVHGVGYTL 224


>gi|269965392|ref|ZP_06179512.1| putative two-component response regulator [Vibrio alginolyticus
           40B]
 gi|269830038|gb|EEZ84267.1| putative two-component response regulator [Vibrio alginolyticus
           40B]
          Length = 243

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + +         G  +    ++   +        D+  ++  L       L
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHKVSRATNVADAKAQYQQQPFDLLILDRGLPD--GDGL 69

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R      P++ ++        +D  ++GVDD + KP    E  ARV  + RR+ 
Sbjct: 70  DICHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVS 129

Query: 121 VS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
            +          ++  + GP+R+  +     +  +   L   E  +L++L    G+  +K
Sbjct: 130 QTAEVKVANEVLDDAMDFGPLRIIPELHQVSLNDKDVTLTATEFTLLQFLATRPGRVYSK 189

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
            ++   ++     +   + V S I++LR KL  +      + +   +GY  
Sbjct: 190 DELLDHVWNTS-HSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGYKF 239


>gi|260881100|ref|ZP_05403616.2| transcriptional activator protein Irlr [Mitsuokella multacida DSM
           20544]
 gi|260849516|gb|EEX69523.1| transcriptional activator protein Irlr [Mitsuokella multacida DSM
           20544]
          Length = 226

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   +      +   + + +E   +    +  + +   D   +    +  GE  +E
Sbjct: 5   LLAEDDKRLGKLIQYMLEQNDIQVEWVTN--GSDIYEYAMYTDYDILILDWMMPGETGVE 62

Query: 63  LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
               +R    +  ++ ++   S++  +   D+G DD + KP    E++AR+ A+ RR   
Sbjct: 63  ACSRLRKDGYEKAILMLTARDSVEDRVTGLDAGADDYLVKPFEFAELMARLRALGRRSTQ 122

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K+  +  E G   +    +  + + +V  L  RE +I + L  N G  V +  I   I+G
Sbjct: 123 KIQQDVVEVGEFTLNRTAKVLKKKDKVIQLSPREFQIFDLLAQNIGIVVPRDIILDRIWG 182

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           L +  V  N ++S++  LRKKL    G   + + R +GY ++
Sbjct: 183 L-ESDVSSNNIDSYMKILRKKLDLGDGGTVIKTVRGVGYKLE 223


>gi|212697044|ref|ZP_03305172.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675819|gb|EEB35426.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 224

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 115/224 (51%), Gaps = 11/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D  ++ D         G  +E  F+ ++  E ++     D+  ++  L       
Sbjct: 3   ILIVEDEQILNDTINKSLKKSGYEVESAFDGIDAMEMIE-IESYDLIILDLNLPH--MDG 59

Query: 61  LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
           +E+ + +R   +   ++ +S    ++  ++  D+G +D + KP H  E+ ARV ++ RR 
Sbjct: 60  MEILKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRN 119

Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  N+      I   S  R   V GE   L R+E  ILEYL+ N+G+ +++ ++   ++
Sbjct: 120 FIQKNSEISFDKIEFDSKNRRVFVDGEELKLTRKEIGILEYLLLNQGRPISQEELIEHVW 179

Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D +V+   N +  HIS LRKKL+NKL +DP++++  +GY +
Sbjct: 180 ---DSSVDLLSNSIRVHISALRKKLKNKLNYDPIENRIGVGYLL 220


>gi|326571623|gb|EGE21638.1| two-component system response regulator [Moraxella catarrhalis BC7]
          Length = 237

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +                + D+  ++  L   G   L
Sbjct: 11  ILIVEDDERLAMLTQDYLRKNGLDVAIETDGARAIRRIIGEQPDLVVLDVMLP--GSDGL 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
            + R +RAH Q P++ ++        +   + G DD V KP+  R +LAR+ A+ RR   
Sbjct: 69  AVCREVRAHYQQPILMLTARTDDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRSDT 128

Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                S  R E G + + + GR   +  E+      E  +L  L +N G+ +++  IF  
Sbjct: 129 VPSDTSPQRLEFGDLVIDNGGRSVTLNDELVDFTSAEYDLLWLLASNAGRILSREDIFER 188

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           + G+ +   ++  ++  IS++R K+ +       + + R  GY
Sbjct: 189 LRGI-EYDGQDRSIDVRISRIRPKIGDDSENPKRIKTVRSKGY 230


>gi|197285086|ref|YP_002150958.1| two-component response regulator of kdp operon [Proteus mirabilis
           HI4320]
 gi|227355501|ref|ZP_03839896.1| two-component response regulator of kdp operon [Proteus mirabilis
           ATCC 29906]
 gi|194682573|emb|CAR42615.1| two-component response regulator of kdp operon [Proteus mirabilis
           HI4320]
 gi|227164297|gb|EEI49186.1| two-component response regulator of kdp operon [Proteus mirabilis
           ATCC 29906]
          Length = 227

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEK 59
            ++++D   +         ++G  +  +++ E +  L  +A  + D+  ++  L  K   
Sbjct: 6   ILIVEDEKEILRFVRLALENEGFRV--YDASECQRGLIEAASRKPDLVILDLGLPDK--D 61

Query: 60  VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L   +  R  S  P+I +S   S Q  +D  D+G DD + KP    E+LARV A  RR 
Sbjct: 62  GLCFIQDFRQWSSTPIIVLSARDSEQDKVDALDAGADDYLTKPFGMSELLARVRASLRRF 121

Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
              +    +   G I +    R    QG        E R+L  L+ N GK + +  +   
Sbjct: 122 VKQETETTQFTFGDITIDWVKRIVTRQGVPIHFTPTEFRLLSELVNNSGKVLTQRHLMQH 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           ++G  +     + +  ++  LR+K+  +      + ++  +GY  
Sbjct: 182 VWGP-NFVEHSHYLRIYMGHLRQKIETDPTCPVHLITETGIGYRF 225


>gi|170077111|ref|YP_001733749.1| two-component response regulator (ycf27) [Synechococcus sp. PCC
           7002]
 gi|169884780|gb|ACA98493.1| two-component response regulator (ycf27) [Synechococcus sp. PCC
           7002]
          Length = 258

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 93/225 (41%), Gaps = 10/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   V+          G   +   + + +E L    RED   +   ++       
Sbjct: 16  ILVVDDEIAVRRILQTRLSMIGY--DIITAADGDEALDIFWREDPDLVILDVMMPKRDGY 73

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + IR  S  P+I ++    +   +     G DD + KP   +E+  R+  I RR + 
Sbjct: 74  YVCQEIRRESSTPIIMLTALGDVADRITGLRFGADDYLIKPFSPKELEVRIQCILRRTQK 133

Query: 122 S------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
           +           T  + + ++ R      +   L   E  +LE L+   G+ +++T I +
Sbjct: 134 TLPPTEEAGILRTANLVIDTNRRKVTQNNKPLRLTHIEFNLLELLVNQAGQPLSRTDILT 193

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218
           AI+G       +  VV+ H+S+LR K+       + + ++R  GY
Sbjct: 194 AIWGYVPRRHSDLRVVDVHVSRLRSKIEQDPRQPEFIITERGTGY 238


>gi|221069624|ref|ZP_03545729.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714647|gb|EED70015.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 249

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   +     A    DG+ +      E         R D+  ++  L       
Sbjct: 21  LVLVVEDEPAIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHLPKV--DG 78

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           +++ R+IR  S VP+I ++        L     G DD V KP +  E++ARV A+ RR +
Sbjct: 79  VDVLRMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQ 138

Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGE-----VFPLPRRERRILEYLMANRGKRVAKT 171
                       GPI +  +     V  +        L   E R+L  L A   +  ++ 
Sbjct: 139 AKPAPVAAPIRVGPIEIDVEAHSAAVYDDAGQAVPLALTLTEFRLLACLAAQPRRCFSRA 198

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +      L +    E V++SH+SKLR+KL+       +++ R +GY +
Sbjct: 199 YLIENC--LPESDALERVIDSHLSKLRRKLQLAGQDGLIETVRGIGYRL 245


>gi|24376106|ref|NP_720149.1| osmolarity response regulator [Shewanella oneidensis MR-1]
 gi|24351138|gb|AAN57593.1|AE015895_2 transcriptional regulatory protein OmpR [Shewanella oneidensis
           MR-1]
          Length = 241

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + R +R   S +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+ +  + +++ +
Sbjct: 126 QDVPGAPAQQEAEIRFGEFSLDLATREMYHGDEAIVLTSGEFAVLKVLVTHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|332829438|gb|EGK02087.1| hypothetical protein HMPREF9455_01721 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 229

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 93/225 (41%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   + +       + G  +      +  + L SS   D+   +  L        
Sbjct: 4   ILVIEDEKRIAELLGKGLSEFGFEVTLAFDGDTGKRLISSNLYDLIITDIILPHH--NGF 61

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R ++     VP+I ++   +    LD FD+G DD + KP   RE+ AR+  + +R  
Sbjct: 62  EITRFVKEKYLHVPIIMLTALGATDDKLDGFDAGADDYMVKPFDLRELNARINVLLKRNS 121

Query: 121 VSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                      +   + +  + R     G+   L  +E  +L+YLM N  + + + +I  
Sbjct: 122 NHPENKVPDELKYHDLCMHVNTRTVSRSGKEIRLTPKEFSLLKYLMENPERVLPRAEIAE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            ++         N ++ +I+ LR+K+  +     + +   +G+ +
Sbjct: 182 IVWDTH-FDTGTNFIDVYINYLRRKIDKEFDNKLIHTNPGVGFIL 225


>gi|325002114|ref|ZP_08123226.1| two-component response regulator [Pseudonocardia sp. P1]
          Length = 225

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 5/219 (2%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   + +    +   +G      +            + DV  ++  L   G   ++
Sbjct: 6   LVVDDDPALAEMLTIVLRGEGFETAVVSDGTRALPAVRDMQPDVVLLDLMLP--GMNGID 63

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R IRA S VP++ ++        +   +SG DD V KP   +E++AR+ A  RR++  
Sbjct: 64  VCRAIRAESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARVRRIETE 123

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
              +   G I +          G    L   E  +L  L     +   +  +   ++G +
Sbjct: 124 PAEQLSIGEIDIDVPAHQVTRGGRPIALTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219
             A +  +V  H+ +LR K+       + V + R +GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEVVLTVRGVGYK 221


>gi|283787411|ref|YP_003367276.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282950865|emb|CBG90542.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 232

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 89/227 (39%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G ++   +  E    L   + + +          G   L
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVMMPKKNGIDTL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 64  ---KALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S  +          E   + +    ++    G+   L   E  +L  L  + G+ V++  
Sbjct: 121 SEQQQSSDNSSPTLEVDALSLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   K G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPERKDGHPWFKTLRGRGY 226


>gi|257790535|ref|YP_003181141.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474432|gb|ACV54752.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 224

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + D       +   S++  +  +    L      D+  ++  L       +
Sbjct: 3   ILIVEDERALCDAIARSLRNLAYSVDCCHDGQEALDLLGVEVFDLVVLDLNLPR--IDGM 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119
            + + +R    +  ++ +S    +   +   D+G +D + KP H  E+ AR+ ++  RR 
Sbjct: 61  TVLKALRKTDRETKVLILSARGKVFDKVTGLDAGANDYLTKPFHLDELAARIRSLTLRRF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N     G +   +  R   V GE   L R+E  ILEYLM N+G+ V++ ++   ++ 
Sbjct: 121 AQDNIVLTCGKLSFDTKARIASVGGEALSLTRKETGILEYLMLNQGRPVSQEELIEHVW- 179

Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D +V    N    HIS LRKKLR+ LG+DP+ ++   GY ++
Sbjct: 180 --DSSVNSFSNATRVHISSLRKKLRSALGYDPIRNRIGEGYVME 221


>gi|120405958|ref|YP_955787.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958776|gb|ABM15781.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 233

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 21  DDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLI 76
           + G+ L GF+   +++  E L+S+      AI   +       + +   +RA  + VP+ 
Sbjct: 24  ERGLRLSGFDVYTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 83

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIR 132
            +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+     GP+ 
Sbjct: 84  VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATFSSETITVGPLE 143

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+ 
Sbjct: 144 VDIPGRRARVDGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVDV 202

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I  LR+KL        + + R +G+ +
Sbjct: 203 FIGYLRRKLEANGAPRLLHTVRGVGFVL 230


>gi|332307772|ref|YP_004435623.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175101|gb|AEE24355.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 235

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 13/228 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60
            +LIDD   + +         G +++  +  E       S +  D+  ++  L       
Sbjct: 6   LLLIDDDQALTELLQEYLTAQGYTVQVASDGEAGLLAAKSGQHFDLIILDVMLPKV--DG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            E+ + +R+    P++ ++        +   + G DD + KP +HRE+ ARV AI RR+ 
Sbjct: 64  FEVLKRLRSTHVTPVLMLTAKGDDFDRILGLELGADDYLAKPFNHRELSARVKAIVRRVD 123

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   K   N  E G +++    +          L   E  +L  LM++    V K 
Sbjct: 124 IQAGLQSDKQKQNMIEIGDVQLNIAAQTVACNSHEVELTGTEFAVLRLLMSSSPDLVPKQ 183

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            I   + G    A +   ++ H+S LRKKL      + + + R +GY 
Sbjct: 184 AISEQVLGRKLAAFD-RSIDMHVSNLRKKLNMFSEQEKIKTHRGVGYV 230


>gi|229124769|ref|ZP_04253949.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228658746|gb|EEL14406.1| DNA-binding response regulator [Bacillus cereus 95/8201]
          Length = 206

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 15/209 (7%)

Query: 24  VSLEGFNSLEFEEWLQSSAR----EDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGI 78
           + +EG+  L   +  ++  R     DV  ++  L        EL R+ R     +P++ +
Sbjct: 3   LEMEGYEVLTAADGREALERWNEGPDVLILDVMLPDT--DGYELLRLFREKDRDIPVLML 60

Query: 79  SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAETGPIRV 133
           +    +   L     G DD V KP ++ E++ RV  + RR+K     VS+   E G I +
Sbjct: 61  TAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVKKTEVTVSHEVIEAGEITI 120

Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193
               R   V G+   L  RE  + +  ++N  +   + ++   ++G F+       V+  
Sbjct: 121 CPKERKVHVSGKEIQLTYREFNLCQLFVSNPQRVFMRDELLEKVWG-FEYIGNTRAVDIM 179

Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           + +LRKKL N    + + +   +GY +D 
Sbjct: 180 VQRLRKKLGNSG--EYIKTIYGVGYKLDC 206


>gi|317122946|ref|YP_004102949.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592926|gb|ADU52222.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 276

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 7/221 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D   + +        DG +++  +       L  S   D   ++  L   G    E
Sbjct: 4   LVVEDEERLAEAVRRALERDGHTVDVAHDGLQGLDLARSGTFDALVLDVMLP--GLDGFE 61

Query: 63  LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI--YRRL 119
           + R +RA    VP++ ++   ++   +   DSG DD + KP    E+ ARV A+      
Sbjct: 62  ICRRLRAEGNPVPILILTARDAVADRVRGLDSGADDYLVKPFALVELQARVRALGRRAPR 121

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
                  E GP+R         V G    L  RER +LE L+ N G+  ++ +I   ++G
Sbjct: 122 PPDPPVVEVGPVRFHPATGTVTVAGRPVELRPRERALLELLLRNPGRLFSRDEILDRVWG 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              E    NVV+ H+ +LR+KL        ++S R  GY +
Sbjct: 182 FDREPPASNVVDVHVCQLRRKLGPA--SRLIESVRGYGYRL 220


>gi|254713505|ref|ZP_05175316.1| Transcriptional regulatory protein chvI [Brucella ceti M644/93/1]
 gi|254716139|ref|ZP_05177950.1| Transcriptional regulatory protein chvI [Brucella ceti M13/05/1]
 gi|261217910|ref|ZP_05932191.1| regulatory protein BvrR [Brucella ceti M13/05/1]
 gi|261321240|ref|ZP_05960437.1| regulatory protein BvrR [Brucella ceti M644/93/1]
 gi|260922999|gb|EEX89567.1| regulatory protein BvrR [Brucella ceti M13/05/1]
 gi|261293930|gb|EEX97426.1| regulatory protein BvrR [Brucella ceti M644/93/1]
          Length = 239

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +  +       +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPR--MDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR+  
Sbjct: 68  ELLRHLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +             E G + +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 128 RDGTAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236


>gi|239944760|ref|ZP_04696697.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991225|ref|ZP_04711889.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448223|ref|ZP_06587613.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351170|gb|EFE78074.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 230

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   V     A+    G  +    N  E    L  + +E    I   L    +  
Sbjct: 3   LLLVEDDDHVAAALSAVLARHGFQVVHARNGEEALRALLPAEKEPFGVILLDLGLPDQDG 62

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +  P+I ++    +++ +   + G DD V KP    E+LAR+ A+ RR  
Sbjct: 63  YEVCGKIRKRTATPVIMVTARADVRSRIHGLNLGADDYVTKPYDTGELLARIHAVARRTS 122

Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
              +           GP+ +    R   V GE   L R+E  +L  L    G    + QI
Sbjct: 123 SGEDTAPTPVAALRLGPVAIELPTRRVSVDGEEVQLTRKEFDLLALLAQRPGVVFRREQI 182

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            S ++    E      +E H++ LR KLR       +++ R +GY +
Sbjct: 183 ISEVWRTSWEGTG-RTLEVHVASLRSKLRLPT---LIETVRGVGYRL 225


>gi|209516071|ref|ZP_03264931.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209503531|gb|EEA03527.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 231

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 8/222 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           ++++D + +           G  ++  ++      LQ +  +   AI   L   G   L 
Sbjct: 6   LIVEDDSSIAANLYDYLEAGGYEVDVASNGNA--GLQMALADSWDAILLDLSLPGMDGLT 63

Query: 63  LPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           L R +R  A    P++ ++   +L   L  F  G DD + KP   +E+ AR+ A+ +R  
Sbjct: 64  LCRRLREEAGRDTPVLMLTARDALDDKLAGFVHGADDYLVKPFSLKEVGARLGAMIKRYR 123

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +V+        +R+       E  G    LP +   +L  LM +  +   + ++ S ++
Sbjct: 124 GQVAAMELRFADVRLDLSTMTVERAGRAVKLPPKCLHLLRILMQSPRRTFTRAELESDVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  +E  + + + +H+  LR+ LR     D +++   +GY +
Sbjct: 184 G--EELPDSDTLRTHVYTLRRALRGPGETDVIETLHGVGYRL 223


>gi|163736310|ref|ZP_02143729.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
 gi|163741161|ref|ZP_02148553.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis
           2.10]
 gi|161385514|gb|EDQ09891.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis
           2.10]
 gi|161390180|gb|EDQ14530.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
          Length = 239

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D          +     +++  +++   EE +  +   D   I   L        
Sbjct: 3   ILLVEDDPTTAKSIELMLTHANLNV--YSTDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A  + P++ +S     +  +  F  G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRQLRMARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +   TG I V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHSQSIINTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
             DE  E  +++  I KLRKKL    G D  +++    GY +
Sbjct: 181 GMDE-PELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVL 221


>gi|294677200|ref|YP_003577815.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus
           SB 1003]
 gi|6467529|gb|AAF13177.1|AF181078_1 response regulator homolog [Rhodobacter capsulatus]
 gi|294476020|gb|ADE85408.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus
           SB 1003]
          Length = 237

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D          +     +++  + +   EE +  +   D   I   L       L
Sbjct: 3   ILLVEDDPTTSRSIELMLTHANLNV--YCTDLGEEGIDLAKLYDYDLILLDLNLPDMNGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R A    P++ ++     +  +  F  G DD + KP H  E++AR+ AI RR K
Sbjct: 61  EVLRQLRLARVDTPILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             S +   TG I V  D +  EV G+   L  +E ++LE L   +G  + K    + +YG
Sbjct: 121 GHSQSIIRTGKISVNLDAKTVEVGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220
             DE  E  +++  I KLRKKL     G + +++    GY +
Sbjct: 181 GMDE-PELKIIDVFICKLRKKLAEVTGGENYIETVWGRGYVL 221


>gi|325261598|ref|ZP_08128336.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
 gi|324033052|gb|EGB94329.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
          Length = 219

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 15/212 (7%)

Query: 9   ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68
           AL KDG++     DG +L+               + D+  ++  +   GE    +   IR
Sbjct: 15  ALEKDGHLVDTETDGTALQPSRC----------QQYDLLLLDVMMP--GEDGFSVCGRIR 62

Query: 69  AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127
           A    P++ ++        +  F  G DD + KP    E+ ARV A  RR ++   +   
Sbjct: 63  AEVDCPILFLTARAEDAALVQGFGLGADDYIKKPFSIAELRARVNAHLRREVRQPAHTLN 122

Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187
            G +R     +     G   P  + E  I EYL  + G+   K Q++ A++G FD   + 
Sbjct: 123 RGGVRFDMQAKMAAAGGNPLPFTKGEYAICEYLALHAGQVFTKEQLYEAVFG-FDAEGDP 181

Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           + +  HI  +R KL+ + G + +++   +GY 
Sbjct: 182 SSIAEHIKNIRAKLKTE-GINSIETVWGVGYK 212


>gi|226330037|ref|ZP_03805555.1| hypothetical protein PROPEN_03950 [Proteus penneri ATCC 35198]
 gi|225200832|gb|EEG83186.1| hypothetical protein PROPEN_03950 [Proteus penneri ATCC 35198]
          Length = 227

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +          +G  +   N  +      +S + D+  ++  L  K    L
Sbjct: 6   ILIIEDEKEILRFVRLALESEGFRVYEANECQRGLIEAASRKPDLVILDLGLPDK--DGL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              +  R  S  P+I +S   S Q  +   D+G DD + KP    E+LAR+ A  RR   
Sbjct: 64  CFIQDFRQWSSTPIIVLSARDSEQDKVKALDAGADDYLTKPFGISELLARIRASLRRFVK 123

Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +  + +   G I +    R    Q +   L   E R+L  L+ N GK + +  +   ++
Sbjct: 124 QETQSTQFTFGDITIDWVNRIVTRQNDPVHLTPTEFRLLSELVNNSGKVLTQRHLMQHVW 183

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G  +     + +  ++  LR+KL  +      + ++  +GY  
Sbjct: 184 GP-NFVEHSHYLRIYMGHLRQKLETDPACPVHLMTETGIGYRF 225


>gi|115526645|ref|YP_783556.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520592|gb|ABJ08576.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 258

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 89/229 (38%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D    +         +G  +           + +  R D+  ++  L    E  L
Sbjct: 17  ILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPD--EDGL 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L R +RA SQVP+I ++        +   + G DD + KP + RE+LAR+ A+ RR   
Sbjct: 75  SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQAS 134

Query: 122 SNNRAE--------TGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           + N +E            R+    R+     G    L   E  +L       G+ +++  
Sbjct: 135 ALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSREV 194

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           +   +    +    +  ++  +S++R+K+         + + R  GY  
Sbjct: 195 LLE-LTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMF 242


>gi|15599577|ref|NP_253071.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100035|ref|ZP_01363953.1| hypothetical protein PaerPA_01001056 [Pseudomonas aeruginosa PACS2]
 gi|116052415|ref|YP_792726.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893472|ref|YP_002442341.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254238956|ref|ZP_04932279.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719]
 gi|254244809|ref|ZP_04938131.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192]
 gi|296391088|ref|ZP_06880563.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313106911|ref|ZP_07793114.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa 39016]
 gi|9950611|gb|AAG07769.1|AE004854_5 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115587636|gb|ABJ13651.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126170887|gb|EAZ56398.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719]
 gi|126198187|gb|EAZ62250.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192]
 gi|218773700|emb|CAW29514.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310879616|gb|EFQ38210.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa 39016]
          Length = 227

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +           G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLP--GIDGY 60

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L R +R  A    P+I ++    L   L  F SG DD + KP    E+ AR+ A+ RR 
Sbjct: 61  ALCRRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    R      +    D  + +  G+   L     ++L  LM      V +  +  A++
Sbjct: 121 QGGGRRELSVADLSYDLDTLEVKRAGKSLKLNPIGLKLLAVLMQKSPHVVRRDALEEAVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFSVALLHTVHGVGYRL 220


>gi|317471402|ref|ZP_07930756.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901153|gb|EFV23113.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 226

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   V         + G   E   S             D+  ++  L  K     
Sbjct: 4   ILIIEDNQDVSRMLSEFLSESGYQPEAAFSGTDGLIKLREKSYDLVLLDLMLPYK--SGD 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118
           ++ R +R  S +P+I IS    + T +D    G DD + KP    E+ ARV +  RR   
Sbjct: 62  QVLRELRGFSNIPVIVISAKDIVGTKIDLLKLGADDYITKPFDLGEVEARVLSNLRRQSS 121

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            KV     +   + +  D +   + G+   L  +E  IL+ LM +  K   K  ++  ++
Sbjct: 122 SKVKEQTLQYRDLVLSKDAKSVLLGGQDLELTAKEYAILQLLMEHPKKVYTKANLYETVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
              +   ++N V++HIS LR KL+     +  +++   +GY +
Sbjct: 182 -EDEYLGDDNAVKTHISNLRNKLKKASPLEQYIETVWGIGYRM 223


>gi|304407935|ref|ZP_07389585.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342954|gb|EFM08798.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 235

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 15/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++ DD   + +        +G  +   +N  E  E LQ     D++ ++  +       
Sbjct: 5   ILITDDEIEIAELLQLFLEKEGYQVVVAYNGTEAWELLQHRT-IDLAILDINMPL--MDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
             L + IR     P+I IS   S    +     G DD + KP +  E++ARV A  RR  
Sbjct: 62  FALLKHIRTIHTFPVIVISARNSDYDKILGLGLGADDFIAKPFNPLEVVARVQAQLRRAN 121

Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
                   +   +    G + +           E  PL   E R+L+  M + GK   K 
Sbjct: 122 EFNKPSVPEQPADTTTLGRLVLDHSSCTLLRGDEPIPLTALEYRLLKTFMLSPGKIFTKR 181

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            +F  ++       ++N +   IS+LR+K+         + + R LGY  
Sbjct: 182 HLFELVWSDL-YLGDDNAIMVQISRLREKIEEQPKQPRYIQTVRGLGYKF 230


>gi|322436892|ref|YP_004219104.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321164619|gb|ADW70324.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 233

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +   A     G  +    ++E   +L  S   D+  ++  L   G   +
Sbjct: 9   ILVVEDERKISEAVTAGLKSAGYEVLAARTVEDGLFLLHSQHPDMIVLDLGLP--GMSGM 66

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +RA    +P++ ++   SL   +   D G DD + KP    E+ AR+ AI RR +
Sbjct: 67  EMLRQLRAMGIMIPVLILTSNNSLDDRVAALDLGADDFLLKPFSTAELNARMRAISRRGR 126

Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            +   +     + +  + R     G    L  RE  ++ Y + NRG+ V++  +   ++ 
Sbjct: 127 PTQVAQLSVADLEINLETRTVVRGGMQLELTAREFDLIVYFVGNRGRTVSREMLARDVWH 186

Query: 180 LFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
                   +NV++  I++LR+KL +      + + R +G+ +
Sbjct: 187 ETSRFTPIDNVIDVQITRLRRKLDDPFPQKLLRTVRGVGFIL 228


>gi|167580382|ref|ZP_02373256.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           TXDOH]
          Length = 232

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           VLI+D   ++    +   ++G+++    +        ++ + D++ ++  L       L+
Sbjct: 9   VLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPD--GDGLD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120
           + R +R  S++P+I +S     +  +   D+G DD + KP    E+LAR+ A  RR    
Sbjct: 67  VIRELRGWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 126

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               +   + G + V    R     GEV  L   E R+L  L+ + G+ +   Q+   ++
Sbjct: 127 GAAESPVVKFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           G        + +  +++ LR+KL  +      + ++  +GY +
Sbjct: 187 GPTHVE-SHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRL 228


>gi|162295955|gb|ABX83925.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  VILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPE--LNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR +
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
            +N           I + +D     +  E    +  L   E +I+ +++    K   + +
Sbjct: 132 FANKATNKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNHC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


>gi|116073301|ref|ZP_01470563.1| putative two-component system response regulator [Synechococcus sp.
           RS9916]
 gi|116068606|gb|EAU74358.1| putative two-component system response regulator [Synechococcus sp.
           RS9916]
          Length = 236

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S +            +  ++  L       +
Sbjct: 8   LLLVDDDPELLQFLREELEGAGHGCIAVASGQDALLQLRQQAFALVVLDWGLPDF--NGI 65

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R +R+     P++ ++ + +L   +   D+G DD + KP    E+ ARV A  RR  
Sbjct: 66  EICRRLRSSGDTTPVLMLTAHDALDERVAALDAGADDFLTKPFELEELHARVRAQLRRQG 125

Query: 121 VSNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            +  R      E G + +    R+ +       L +RE  +L  L+   G  + + QI  
Sbjct: 126 YAAQRDATSNLELGDLSIDLIRREVKRGESAINLSQREFDLLVCLVQEAGTVLPRQQILE 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            ++G      + N ++ ++  LR+KL        + + R +G+ 
Sbjct: 186 TVWG-HPFVGDPNALDVYMGYLRRKLEQSGLPQLLHTTRGVGFM 228


>gi|124267828|ref|YP_001021832.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124260603|gb|ABM95597.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 236

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LIDD A +           G  +E   +L+           D   ++  L       L
Sbjct: 5   LLLIDDDARLTAMVGDYLRQAGYEVEVAPTLDSGRTRLERELFDALVLDLMLPD--GDGL 62

Query: 62  ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
           +L R +RA  +    PL+ ++        +   + G DD + KP   RE+LARV A+ RR
Sbjct: 63  DLCRELRAAPRTRALPLLMLTARGEPMDRIVGLELGADDYLPKPFEPRELLARVKALLRR 122

Query: 119 LKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
              S    +    G + V + GR   + G+   L   +  +L+ L    G+ +++ QI  
Sbjct: 123 AAPSGGDGDVLRFGRLEVDAGGRQARLDGKPCDLTSYQFDLLQVLANAPGRVLSRDQIMD 182

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           A+ G   EA +   ++ HIS++R  + +       + + R  GY  
Sbjct: 183 ALKGHALEAFD-RSIDVHISRIRAAIEDDPKTPRRILTVRGAGYVF 227


>gi|256060055|ref|ZP_05450237.1| Transcriptional regulatory protein chvI [Brucella neotomae 5K33]
 gi|261324031|ref|ZP_05963228.1| regulatory protein BvrR [Brucella neotomae 5K33]
 gi|261300011|gb|EEY03508.1| regulatory protein BvrR [Brucella neotomae 5K33]
          Length = 239

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 88/230 (38%), Gaps = 14/230 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             L+DD   +          +G  +E +           +   +++  +  +       +
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPR--MDGM 67

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           EL R +R  S +P+I ++        L     G DD + KP   R ++ RV A+ RR+  
Sbjct: 68  ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127

Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171
            +             E G + +  +      +GE   L   E  IL  L    G   ++ 
Sbjct: 128 RDGTAKLAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187

Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220
            +  A Y      V++  ++SHI +LRKK +     F+ +++   +GY  
Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236


>gi|239993573|ref|ZP_04714097.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii ATCC
           27126]
          Length = 237

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60
            ++IDD   + +         G  ++  N  E       S R  D+  ++  +       
Sbjct: 10  ILVIDDDLELTEMLSTYLSSMGYQVQVRNDGEEGLSEAVSGRHYDLILLDVMMP--KMDG 67

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            ++ + +R     P++ ++        +   + G DD + KP +HRE++AR+ AI RR  
Sbjct: 68  FDVLKKLRVSHSTPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRHN 127

Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
           +S+             I +    +  +V      L   E  IL  LM N  +RV K +I 
Sbjct: 128 LSSTGGAVEQDLFVNGIFLSPSSQLAKVDDVELTLTTTEFLILRLLMLNAAQRVTKEEIS 187

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             I G   +A +   ++ H+S LRKK+      + + + R +GY +
Sbjct: 188 LKILGKPLQAFD-RSIDMHVSNLRKKISAVAVDEKIKTIRGVGYML 232


>gi|299536072|ref|ZP_07049389.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
 gi|298728496|gb|EFI69054.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 99/226 (43%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   + +    +   +G++ +   N++E  +   ++   D   ++  L       
Sbjct: 6   ILVLEDERAIAEMIEIILRKEGINNITLCNTIEEAKDEMNTKTFDFYLLDIMLPD--GSG 63

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           L++   IR  S  P+  ++   S    L  F +G DD + KP +  E++ARV     R  
Sbjct: 64  LDMANSIREKSDAPIFYLTAKSSDADKLRGFMNGADDYITKPFNPLELVARVKVQLVRYM 123

Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                  N+           D  + EV G    +  R   +L+YL  N G+ ++K QI+ 
Sbjct: 124 KKKSVPENHIFTCSRFTFDIDAAEIEVDGVKEIISGRLFHLLKYLCDNAGQVLSKEQIYE 183

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            ++G  D   ++N V  HI KLR+K+    G    + + R +GY +
Sbjct: 184 RVWG--DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYKL 227


>gi|160895063|ref|ZP_02075837.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50]
 gi|156863494|gb|EDO56925.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50]
          Length = 239

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   +       F   G ++    +       +   + D+  ++  +        
Sbjct: 20  ILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAAL-KEVEKKPDIILLDVNMPD--IDGF 76

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            +   IR +   P+I ++        +  F  G DD V KP    E+ AR+AA  RR K 
Sbjct: 77  TVCERIRDYVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHLRREKR 136

Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            N  ++      + +    R      +     ++E  I+ +L  N+G    +  I+  ++
Sbjct: 137 HNISSKVQFDEDMVIDYSSRIVFYHNKDMAFTKKEFDIISFLSQNKGIVFDRETIYEKVW 196

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219
           GL D   +  VV  HI ++R K  +      +++    GY 
Sbjct: 197 GL-DGIGDNTVVTEHIRRIRAKFLSLGDRPYIETVWGCGYR 236


>gi|115352373|ref|YP_774212.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282361|gb|ABI87878.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 232

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           VLI+D   ++    A   ++ +++    + +      ++ + D+  ++  L       L+
Sbjct: 9   VLIEDEKQIRRFVRAALEEEDIAVFEAETGKQGLIDAATRKPDLVIVDLGLPDT--DGLD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R  S+VP+I +S        +   D+G DD + KP    E+ AR+ A  RR    
Sbjct: 67  VIRELRGWSEVPVIVLSARTQEDEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRNQG 126

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + +   G + V    R     GE+  L   E R+L  L+ + G+ +   Q+   ++
Sbjct: 127 GANESPKVSFGGVSVDLAMRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G        + +  +++ LR+KL R+    + + ++  +GY +
Sbjct: 187 GPSHVE-SHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|328949663|ref|YP_004366998.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328449987|gb|AEB10888.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 225

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 4/219 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +         + G  +    +             D+  ++  L     +  
Sbjct: 6   ILVIEDDPEIARLLELELCEAGFEMIWAPNGMQGLVALRERSPDLVILDLGLPD--LEGG 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+ R  +   ++P+I ++   +++  ++    G DD V KP H  E++AR+     R K 
Sbjct: 64  EIARRAKQAGEIPIIVLTAADAVERKVELLSGGADDYVTKPFHPAELIARIQVQL-RHKE 122

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
                +   + V    R    +     L  +E  +L  L +  GK  ++ +I   ++G  
Sbjct: 123 GGEVRQVDALLVHLGKRQVHFEEREVRLSPKEFDLLALLASRPGKVFSREEIERHLWGKP 182

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            E    NVV+ H++ LR KLR    +  + + R +GY++
Sbjct: 183 LEH-SSNVVDVHVANLRAKLREAGAYGYLRTVRGVGYAL 220


>gi|167585929|ref|ZP_02378317.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 232

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           VLI+D   ++    A   ++ +++    + +      ++ + D+  ++  L       L+
Sbjct: 9   VLIEDEKQIRRFVRAALEEEDIAVFEAETGKQGLIDAATRKPDLVIVDLGLPDT--DGLD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R  S+VP+I +S        +   D+G DD + KP    E+ AR+ A  RR    
Sbjct: 67  VIRELRGWSEVPVIVLSARTQEDEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRNQG 126

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + +   G + V    R     GE+  L   E R+L  L+ + G+ +   Q+   ++
Sbjct: 127 GANESPKVSFGAVSVDLAMRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G        + +  +++ LR+KL R+    + + ++  +GY +
Sbjct: 187 GPSHVE-SHHYLRIYMAHLRQKLERDPAQPEYIVTETGVGYRL 228


>gi|118476273|ref|YP_893424.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118415498|gb|ABK83917.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 227

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++  +        
Sbjct: 8   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPN--MDGW 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 66  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 125

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 126 -DGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 183

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     + +++   +GY 
Sbjct: 184 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYK 223


>gi|219670685|ref|YP_002461120.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540945|gb|ACL22684.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 11/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L DD   ++     +  +DG              +  +   D+  ++  +        
Sbjct: 3   IMLADDEESIRIVVEYIITEDGYDFCYAADGAEALAVFEAENPDLVILDVMMP--KLNGF 60

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R   S VP+I +S    +      F +G DD + KP    E+  R+ A+ RR  
Sbjct: 61  DVCAQLRKKGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSSLELSLRIEALLRRRD 120

Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
                 E       G + +F    +  ++G+   L  +E +IL Y+ ++ GK   + Q+ 
Sbjct: 121 HQAGETEERESIKLGDLEIFFKRYEARLKGKRVELTPKEFKILAYMASHPGKVYTRKQLL 180

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           + ++G  D   E   +   I K+R+K+  +      + +   +GY  
Sbjct: 181 TYVWGE-DYVGELTGIAVFICKIREKIEEDPSKPKYLQTVWGVGYKF 226


>gi|88807104|ref|ZP_01122616.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788318|gb|EAR19473.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 265

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 89/232 (38%), Gaps = 15/232 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D   +++         G  ++        + L      D+  ++  L       L
Sbjct: 5   ILLIEDDRDMRELVSGHLEHSGFDVQSAEDGIKGQALALQYSPDLILLDLMLPKV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     S +P++ ++     +  +  F+SG DD + KP    E+  R+ A+ RR
Sbjct: 63  TLCQRLRRDERTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRR 122

Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                       +     GP+ +  +  +     +   L   E  +L  L+   G+ VA 
Sbjct: 123 SDRAPVGSSGNHHEILSYGPLTLVPERFEAIWFDKPVRLTHLEFELLHCLLQRHGQTVAP 182

Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           + I   ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 183 SLILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 233


>gi|332976862|gb|EGK13686.1| DNA-binding response regulator [Psychrobacter sp. 1501(2011)]
          Length = 238

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +          +G+ +              + + D+  ++  L   G   L
Sbjct: 12  ILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLP--GSDGL 69

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R H   P++ ++        +   + G DD V KP   R +LAR+ A+ RR + 
Sbjct: 70  TVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129

Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           + +     R E G + + + GR   + GE+      E  +L  L +N G+ +++  IF  
Sbjct: 130 APSEEVPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 189

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218
           + G+ +   ++  ++  IS++R K+ +       + + R  GY
Sbjct: 190 LRGI-EYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGY 231


>gi|330816594|ref|YP_004360299.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327368987|gb|AEA60343.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 221

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A + +   +     G +++          L      D+  ++  L        
Sbjct: 3   ILVVEDDAEIGEAIGSRLTRLGHAVDLECDGAAASSLLGVESFDLVVLDVMLPS--MDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR  
Sbjct: 61  AILRRLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +    R  E+ G+  PL R+E  +LE L +   +  +K ++ + ++ 
Sbjct: 121 GHASDVLRFGALSIDRSSRLAELDGQPLPLSRQEFALLEILASRPQRVFSKDELLNQLF- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F      N VE +++++R+KL+       + + R +GY I
Sbjct: 180 SFGREPSANAVEQYVTRVRRKLQ--GSDVEIRTARGMGYQI 218


>gi|224823772|ref|ZP_03696881.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224604227|gb|EEG10401.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 228

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 9/222 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +        G +G  +      E       S R  +  ++  +       +E
Sbjct: 5   LLVDDDIELSAMLADYLGQEGFRVSRAADGESGLREALSGRYAIVVLDVMMPR--LNGIE 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R HSQVP++ ++        +   + G DD V KP   R ++AR+ A+ RR   +
Sbjct: 63  VLRRLRQHSQVPVLMLTARGDDIDCIMGLELGADDYVTKPCAMRTLVARLKALLRRAPST 122

Query: 123 N-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                      GP+ ++   R  E  G    +   E  +LE L+ + G+ V+K ++    
Sbjct: 123 AAPTVCGPLAAGPLTLWPTRRHAECDGRALEMTGTEFNLLEVLVRHAGRIVSKHELSQQA 182

Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218
                 A  +  ++ H+  +R+KL         + + R +GY
Sbjct: 183 L-RRPLARFDRSIDVHVCSIRQKLPPRPDSLSWIQTVRGMGY 223


>gi|224419137|ref|ZP_03657143.1| two-component response regulator [Helicobacter canadensis MIT
           98-5491]
 gi|253828072|ref|ZP_04870957.1| response regulator [Helicobacter canadensis MIT 98-5491]
 gi|313142643|ref|ZP_07804836.1| DNA-binding response regulator [Helicobacter canadensis MIT
           98-5491]
 gi|253511478|gb|EES90137.1| response regulator [Helicobacter canadensis MIT 98-5491]
 gi|313131674|gb|EFR49291.1| DNA-binding response regulator [Helicobacter canadensis MIT
           98-5491]
          Length = 222

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 6/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            ++++D   ++   +      G+     +S  E  E L+S    D++ ++  L       
Sbjct: 4   ILIVEDDLDMQKLLVDYLKKSGMEAIATDSPNEALEMLKSKRNFDLAVLDIMLPE--MDG 61

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           LEL + IR  S +P+I  S    + + +  F+ G DD + K     E++AR+ A+ +R  
Sbjct: 62  LELCKKIRQISDLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALLKRYS 121

Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +N     G + V ++     ++G    L   E  IL  L++N+GK  ++  +  AI  +
Sbjct: 122 -ANQVIHYGDLEVDNNKHKVTLEGYSIDLTPAEFEILNLLISNKGKPYSRESLSQAISSI 180

Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
             ++     +++HI  LR KL  +      + S   +GY  
Sbjct: 181 APDS-SLRSIDTHIRNLRAKLGDDAKEPKYIQSVWGIGYKF 220


>gi|254430750|ref|ZP_05044453.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197625203|gb|EDY37762.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 254

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 13/230 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +LI+D + ++D         G  ++        + L      D+  ++  L       L
Sbjct: 5   ILLIEDDSDMRDLVAGHLEHGGFDVQRAEDGIKGQALALQFTPDLVLLDLMLPKV--DGL 62

Query: 62  ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118
            L + +R     +++P++ I+     +  +  F+SG DD + KP    E+  RV A+ RR
Sbjct: 63  TLCQRLRRDERTARIPILMITALADTKDKVSGFNSGADDYLTKPFDLEELTVRVKALLRR 122

Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     N     GPI +  +  +     +   L   E  +L  L+   G+ VA + 
Sbjct: 123 TDHAPLSTQHNEILSFGPITLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVAPSL 182

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           I   ++G ++   +   +  H+  LR KL  +      + +    GY ++
Sbjct: 183 ILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231


>gi|220907440|ref|YP_002482751.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219864051|gb|ACL44390.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 240

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 101/239 (42%), Gaps = 23/239 (9%)

Query: 2   FVLIDDRALVK---------DGYIALFGDDG-VSLEGFNSLEFEEWLQSSAR---EDVSA 48
            +L++D   +          +GY      DG  ++E   S +     Q+S      D+  
Sbjct: 3   ILLVEDETELALPLSRVLNHEGYSVDIASDGETAIEKLRSAQSNPATQASTSPSTYDLLI 62

Query: 49  IEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107
           ++  L       LE+ + +R+  Q  P++ ++   +L   +   D+G DD + KP   RE
Sbjct: 63  LDWILPR--LSGLEICQWVRSQRQATPILMLTAKDTLDERVQGLDAGADDYLVKPFELRE 120

Query: 108 ILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161
           +LARV A+ RR    +   E         + + S  +    +G    L  +E ++LEYLM
Sbjct: 121 LLARVRALLRRTAAIDEPTESHKMLKVDDLELDSQNQLAYRRGRAINLSEKESQLLEYLM 180

Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
               + ++  +I+  ++   D+    NV+ + +  LR+K+        + +    GY  
Sbjct: 181 TRSQQLLSHEEIYQHLWPGEDK-PSSNVLAAQVRLLRRKIEAAGEAPLIHTVYGKGYRF 238


>gi|219848942|ref|YP_002463375.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543201|gb|ACL24939.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 247

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +          +G+ +    +             D+  ++  +       
Sbjct: 8   LVLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPV--MDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R IR+ SQVP+I ++     +  +   + G DD V KP   RE+++R+ A+ RR  
Sbjct: 66  FEALRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHY 125

Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +T       + +    R+  V G+   L   E R+L +L+ N G  +    + S
Sbjct: 126 TQPPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLS 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++G  +   E + +  +I+ LR+K+  +      + ++R +GY  
Sbjct: 186 KVWGP-EYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRF 230


>gi|312140719|ref|YP_004008055.1| two component system response regulator [Rhodococcus equi 103S]
 gi|325675642|ref|ZP_08155326.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|311890058|emb|CBH49376.1| putative two component system response regulator [Rhodococcus equi
           103S]
 gi|325553613|gb|EGD23291.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 226

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L +D   +        G +G ++    +         +   ++  ++  L   G   LE
Sbjct: 5   LLAEDDEAIAAPLSRALGREGYTVTIEQTGPSALERALTGEFELLILDLGLP--GMDGLE 62

Query: 63  LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           + R +RAHS  + ++ ++        +   D+G DD V KP    E++ARV A+ RR   
Sbjct: 63  VCRQLRAHSLDLAVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELMARVRALLRRSGG 122

Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
             +   E   IR+    R   V G    L  +E  +L  L+ + G+ V++  I   ++G 
Sbjct: 123 GEDVVVEVAGIRLEPAARRVLVNGSEIALANKEYELLRVLLEHAGQVVSRDTILREVWGD 182

Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDP-VDSKRFLGYSID 221
             E      ++ H+S LR+K+ ++  G D  + + R +G+ I+
Sbjct: 183 V-ELRGSKTLDMHMSWLRRKIGDEGAGADRKIATVRGVGFRIN 224


>gi|257126902|ref|YP_003165016.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050841|gb|ACV40025.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 234

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +++DD   + D  I++  D G   ++   S++         + D++ ++  L       
Sbjct: 11  ILIVDDEQEILDMTISILADYGYKNIQTAKSVKETMKCVEEKQPDLAILDVMLPD--GNG 68

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            EL   +R  S  P++ ++     +     F  G DD + KP   +E+L R+ AI RR  
Sbjct: 69  FELLEKLRKTSNYPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTY 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           K  +        ++     +     +  PL  +E  +L+ L  N G+ V    +  A++G
Sbjct: 129 KKESPIVNLNGCQIDFSCGEIVKDNKNIPLTAKEYELLQTLYRNAGRIVTIDTLCEAVWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
             +  V  N + +HI ++R+K+  N      + + + LGY +
Sbjct: 189 E-NAYVYTNSLMTHIRRIREKIEINPSHPVSLITMKGLGYKL 229


>gi|108797689|ref|YP_637886.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866777|ref|YP_936729.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108768108|gb|ABG06830.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692866|gb|ABL89939.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 237

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 83/208 (39%), Gaps = 13/208 (6%)

Query: 18  LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ--VPL 75
               DG+ +           L  + R DV+ ++  +   G   + L R +R   +  VP+
Sbjct: 20  YLERDGLEVAIARDGTEALRLLGTERIDVAVLDVMMP--GPDGVTLCRTLRQRGEHTVPV 77

Query: 76  IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGPI 131
           I ++        +   ++G DD + KP   RE+  RV ++ RR      V+      G +
Sbjct: 78  ILLTALGEEDDRIAGLEAGADDYLTKPFSPRELALRVRSVLRRSPTPVGVTPVDLTVGAL 137

Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191
            + +  R   V G    L  RE  +L + + +      + ++   ++    +  + + V 
Sbjct: 138 TISAAARSVTVDGRPVSLTNREFDLLLFFITHADTVFTREELLKQVWRW--DFGDLSTVT 195

Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYS 219
            H+ +LR KL ++     V +    GY 
Sbjct: 196 VHVKRLRSKLGDQH---RVQTVWGRGYM 220


>gi|251779341|ref|ZP_04822261.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083656|gb|EES49546.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 229

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +   +    +   E+ L+++ +  +      ++  G    
Sbjct: 4   ILLVEDEESIRGFIKINLKRNNFEV--IEAECGEDGLKAAEKFSIDLAVLDVMLPGIDGF 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R    ++ +I ++        +   + G DD + KP +  E++ R+ AI RR  
Sbjct: 62  KVCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTA 121

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +   E        P  +    +          +  +E  +++  + N  K  ++ ++ 
Sbjct: 122 DESEVKENIDKLIREPFIIDLYSQKLFKNNIEIDVTPKEYLLMKLFLKNPNKAFSRDELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           + I+G +D   +  +++ +I +LR K+ +     + +++    GY 
Sbjct: 182 NLIWG-YDYFGDPKLIDVNIRRLRAKIEDTPSEPEFIETIWGKGYR 226


>gi|254517651|ref|ZP_05129707.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
 gi|226911400|gb|EEH96601.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
          Length = 233

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 12/227 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++   A       +     + E    L +S + D+  ++  L       +
Sbjct: 6   ILVVEDDKAIRNFISATLDIHSYNCFTAENGEQAMILATSHKPDIIILDLGLPD--IDGV 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           ++ + IRA S  P+I +S     +  ++  DSG DD + KP    E+LAR+    R++  
Sbjct: 64  DIIKKIRAWSNCPIIVVSARSEDKDKIEALDSGADDYLTKPFSVDELLARIRVAIRKMNY 123

Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            N + E       G +++        V  E   L   E ++L  L  N GK +  T I  
Sbjct: 124 DNTKKEESTEFINGDLKIDYVSGCVFVGKEETHLTPIEYKLLCLLAKNVGKVLTHTYILK 183

Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
            I+G+ ++  V    +   ++ LRKK+      +  + +   +GY +
Sbjct: 184 EIWGVAYESEVPS--LRVFMATLRKKIEKNCEKNTYIQTHIGVGYRL 228


>gi|160877446|ref|YP_001556762.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217975283|ref|YP_002360034.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304412081|ref|ZP_07393691.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307305976|ref|ZP_07585722.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|160862968|gb|ABX51502.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217500418|gb|ACK48611.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349631|gb|EFM14039.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911469|gb|EFN41895.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315269648|gb|ADT96501.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 231

 Score =  207 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 5/208 (2%)

Query: 15  YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQV 73
                 D   S++  +  E   +       D + I+  L       + L R +R      
Sbjct: 16  LKQHLLDAHYSIDVASDGEEGLFQALEYNYDAAIIDVGLP--KLDGIALIRSVREQERDF 73

Query: 74  PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132
           P++ ++   S Q  ++  D+G DD + KP H +E++AR+ A+ RR     +     GP  
Sbjct: 74  PILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSAGKASPLIYNGPFS 133

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           + +   +     E+  L   E ++ E+ M ++G+  +KT +   IY   D  ++ NV+E 
Sbjct: 134 LNTSSLEVRKGEELVNLSGSEYKLFEFFMLHQGEVKSKTVLTEHIYDQ-DFDLDSNVIEV 192

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I +LRKKL     ++ +++ R  GY +
Sbjct: 193 FIRRLRKKLDPDNQYNLIETLRGQGYRL 220


>gi|239623923|ref|ZP_04666954.1| sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521954|gb|EEQ61820.1| sensor histidine kinase [Clostridiales bacterium 1_7_47FAA]
          Length = 227

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D   +++         G +++          L      D+  ++  L   G   +
Sbjct: 3   LLIIEDEEDMREALCYGLRKLGYAVDSSGDGAEAAQLCYINHYDLVVLDLNLP--GMDGM 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           E+ R I++      ++ +S    L   +   D G  D + KP H +E+ AR+  + RR  
Sbjct: 61  EVLRHIQSQENPTKVLILSARSELTDKIAGLDGGASDYLTKPFHFQELEARIRMLLRRSF 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++     G + + ++ R     G    L  RE  ILEYLM + G+ V+  ++   ++ 
Sbjct: 121 TQADAALMWGGLCLDTNARTASCNGIPLELTMREFAILEYLMMHMGRPVSAEELMEHVWD 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +     N V+ +IS +R+KL      + + + R  GY I
Sbjct: 181 -SEADPFSNQVKVYISVIRRKLLAVTKDEIIRNIRGAGYLI 220


>gi|223983562|ref|ZP_03633745.1| hypothetical protein HOLDEFILI_01026 [Holdemania filiformis DSM
           12042]
 gi|223964490|gb|EEF68819.1| hypothetical protein HOLDEFILI_01026 [Holdemania filiformis DSM
           12042]
          Length = 219

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 7/220 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A ++          G +       +    +++  +  +  I   ++  GE   
Sbjct: 4   LLLVEDEAPIRTLMRMALTTAGYA--ALEMSDGRTLIETLEQGGIDLILLDVMLPGEDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            L   IR   QVP+I +S    L   +    +G DD + KP    E+LARV ++ RR   
Sbjct: 62  TLLDKIR-RYQVPVIFVSARSQLADKVQALQAGADDYITKPFEMMELLARVESVLRRTGR 120

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            N+  +   + +  D R       V  L  +E  +  +L+ NR   + + +I   ++   
Sbjct: 121 KNSVLKFQNLTIDEDQRQVYGPAGVIELTPKEFDLFVFLIRNRNIALYREEILEKVW-HD 179

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           D       V+ HI+ LRKKL        + S   +GY ++
Sbjct: 180 DYEGTTRTVDMHIASLRKKL---GLSKQIVSVYKIGYRLE 216


>gi|222056071|ref|YP_002538433.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221565360|gb|ACM21332.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 232

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++            SL   +          + R D+  ++  L       +
Sbjct: 11  ILIVDDEPAIQRFLQTALDTGEFSLHKADDGHSALAAAVATRPDIILLDLGLPD--MDGV 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
           E+ R +R  SQVP+I +S        +   D+G DD V KP    E+LAR+    RR   
Sbjct: 69  EVIRRVREWSQVPIIVLSVREREDDKVKALDAGADDYVTKPFGIPELLARMRVALRRSLQ 128

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
           +V      +G + V    R  +VQ E   +   E  +L  L+ + G+ +    +   I+G
Sbjct: 129 EVVEPVFRSGGLEVDLHLRKVKVQEEDVQVTPTEYDLLRLLVTHAGRVLTHAHLLKQIWG 188

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220
           +     + +V+  +IS LR K+         + ++  +GY +
Sbjct: 189 VG-YVEQPHVLRVNISNLRHKIEKDPSRPRYIITEPGVGYRL 229


>gi|47567165|ref|ZP_00237881.1| response regulator DrrA [Bacillus cereus G9241]
 gi|49480172|ref|YP_034844.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52144720|ref|YP_082105.1| response regulator [Bacillus cereus E33L]
 gi|165871786|ref|ZP_02216430.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635708|ref|ZP_02394019.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640695|ref|ZP_02398956.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688522|ref|ZP_02879729.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|177653790|ref|ZP_02935891.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568207|ref|ZP_03021116.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196035772|ref|ZP_03103175.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041367|ref|ZP_03108661.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046799|ref|ZP_03114021.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218901780|ref|YP_002449614.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222094337|ref|YP_002528396.1| response regulator [Bacillus cereus Q1]
 gi|225862556|ref|YP_002747934.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227816544|ref|YP_002816553.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228913274|ref|ZP_04076908.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925774|ref|ZP_04088858.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932013|ref|ZP_04094905.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944339|ref|ZP_04106712.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089647|ref|ZP_04220909.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229154289|ref|ZP_04282409.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|229182915|ref|ZP_04310148.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|254684337|ref|ZP_05148197.1| response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722139|ref|ZP_05183928.1| response regulator [Bacillus anthracis str. A1055]
 gi|254738801|ref|ZP_05196504.1| response regulator [Bacillus anthracis str. Western North America
           USA6153]
 gi|254743813|ref|ZP_05201497.1| response regulator [Bacillus anthracis str. Kruger B]
 gi|254755025|ref|ZP_05207059.1| response regulator [Bacillus anthracis str. Vollum]
 gi|254762241|ref|ZP_05214085.1| response regulator [Bacillus anthracis str. Australia 94]
 gi|301052236|ref|YP_003790447.1| response regulator [Bacillus anthracis CI]
 gi|47556221|gb|EAL14556.1| response regulator DrrA [Bacillus cereus G9241]
 gi|49331728|gb|AAT62374.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978189|gb|AAU19739.1| response regulator [Bacillus cereus E33L]
 gi|164712511|gb|EDR18044.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511410|gb|EDR86795.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528967|gb|EDR91723.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170667547|gb|EDT18303.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081182|gb|EDT66258.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560699|gb|EDV14675.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991739|gb|EDX55704.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022334|gb|EDX61019.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196027852|gb|EDX66465.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218539177|gb|ACK91575.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221238394|gb|ACM11104.1| response regulator [Bacillus cereus Q1]
 gi|225790637|gb|ACO30854.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227002844|gb|ACP12587.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228600539|gb|EEK58126.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228629113|gb|EEK85820.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228693677|gb|EEL47378.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228815241|gb|EEM61489.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827596|gb|EEM73338.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833789|gb|EEM79342.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846325|gb|EEM91343.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300374405|gb|ADK03309.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 223

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 6/220 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +           G       S      L      D+  ++  +        
Sbjct: 4   ILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPN--MDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S VP+I ++        +     G DD + KP     ++AR+ AI RR K 
Sbjct: 62  DTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            +       I          V  E   L   E  +L   + N  +  ++  +   I+G +
Sbjct: 122 -DGFVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG-Y 179

Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219
           +  +E   ++SHI  +R KLR K     + +++   +GY 
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYK 219


>gi|300853961|ref|YP_003778945.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528]
 gi|300434076|gb|ADK13843.1| transcriptional regulatory protein [Clostridium ljungdahlii DSM
           13528]
          Length = 225

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 10/227 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +      L   +   +    S      L      D+  ++  L   G    
Sbjct: 4   ILIVEDDPKINKMVQTLLKKNEYEVVAAFSGTEALLLLEKESFDLILLDLMLP--GLSGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E+   I    Q+P+I +S    L T L+    G DD + KP ++ E++ R+ A+ RR+  
Sbjct: 62  EILVKINEQFQIPIICVSAKDDLNTKLELIRDGADDYITKPFNNEELIVRIGAVLRRMNK 121

Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  N      + + S+     +  E   L  +E  ILE L+++  K   K  IF +
Sbjct: 122 GMTIDKTNIFRFKDLILDSENHIVTINDEPIELTAKEYSILELLISSPRKVFTKQNIFES 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223
           ++   +  ++E VV  H+S LR KL  K G + + +   +GY +  N
Sbjct: 182 VWSE-EYIMDERVVTVHVSNLRNKL--KHGEEYIKTVWGIGYKMQDN 225


>gi|172036545|ref|YP_001803046.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171697999|gb|ACB50980.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 11/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD A + +    +   +G  ++  +  +    L      D+  ++  L  K    L
Sbjct: 3   ILLVDDEAELTEPLYHILSHEGYEVDVADDGQKGYELALQNTYDLLILDWMLPRKP--GL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + +R      P++ ++   +L   +   D+G DD + KP   RE++ARV A+ RR  
Sbjct: 61  SICQELRSQGKNAPVLFLTAKDTLDDRVIGLDAGADDYLVKPFELRELMARVRALLRRSA 120

Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            S      NR +   + + SD +    QG +  L  +E ++L Y M +  + +   QI+ 
Sbjct: 121 ASVETNGINRLKVADLELDSDNQVAYRQGRMVNLSDKEVKLLAYFMEHPHQLLTHDQIYQ 180

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +++    E    NV+ + I  LR+K+  +     + +    GY  
Sbjct: 181 SLWEEP-EKPSSNVLAALIRLLRRKIEEEG--PLIHTVYGKGYRF 222


>gi|53717679|ref|YP_106665.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|53724235|ref|YP_104202.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|67641558|ref|ZP_00440334.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse
           4]
 gi|76811612|ref|YP_331671.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|121599653|ref|YP_994556.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124386101|ref|YP_001027828.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126440707|ref|YP_001057097.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126450961|ref|YP_001082224.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126451555|ref|YP_001064327.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134281570|ref|ZP_01768278.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167001629|ref|ZP_02267423.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|167717409|ref|ZP_02400645.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167736451|ref|ZP_02409225.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167813526|ref|ZP_02445206.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167822070|ref|ZP_02453541.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167843678|ref|ZP_02469186.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167892152|ref|ZP_02479554.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167900664|ref|ZP_02487869.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167908883|ref|ZP_02495974.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167916922|ref|ZP_02504013.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217423889|ref|ZP_03455389.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|226193228|ref|ZP_03788838.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237814435|ref|YP_002898886.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           MSHR346]
 gi|242315495|ref|ZP_04814511.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254174802|ref|ZP_04881463.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254184105|ref|ZP_04890696.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254186570|ref|ZP_04893087.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254194715|ref|ZP_04901146.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254201274|ref|ZP_04907638.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254206615|ref|ZP_04912966.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254257956|ref|ZP_04949010.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254298627|ref|ZP_04966078.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|254357348|ref|ZP_04973622.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52208093|emb|CAH34023.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52427658|gb|AAU48251.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76581065|gb|ABA50540.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|121228463|gb|ABM50981.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124294121|gb|ABN03390.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126220200|gb|ABN83706.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126225197|gb|ABN88737.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126243831|gb|ABO06924.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134247237|gb|EBA47323.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|147747168|gb|EDK54244.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147752157|gb|EDK59223.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148026412|gb|EDK84497.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157808646|gb|EDO85816.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157934255|gb|EDO89925.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695847|gb|EDP85817.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|169651465|gb|EDS84158.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184214637|gb|EDU11680.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217392952|gb|EEC32974.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|225934828|gb|EEH30805.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237503053|gb|ACQ95371.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           MSHR346]
 gi|238522511|gb|EEP85955.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse
           4]
 gi|242138734|gb|EES25136.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|243062639|gb|EES44825.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254216645|gb|EET06029.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 225

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D A +    + L   +G  ++     E  + +  + R D   ++  L   G    
Sbjct: 3   LLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLP--GMSGK 60

Query: 62  ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
           EL  R+ R    VP++ ++ + S+   +D F +G DD V KP   RE++AR+ A+ RR  
Sbjct: 61  ELLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQC 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
            V   +   G +      R+ +  G    L RRE  ILE LM  +GK V+K ++  ++YG
Sbjct: 121 GVGATQLACGDLVYLFATREFQCGGAPLALRRREHAILETLMLQQGKTVSKARLMDSVYG 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           L DE   +  ++ +I +LRK L   L    + + R LGY +
Sbjct: 181 LDDEPSAD-AIDIYIHRLRKHLSGSLAQ--IITLRGLGYIL 218


>gi|163847561|ref|YP_001635605.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525411|ref|YP_002569882.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163668850|gb|ABY35216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449290|gb|ACM53556.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 246

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 95/226 (42%), Gaps = 9/226 (3%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + +++DD   +          +G+ +    +             D+  ++  +       
Sbjct: 8   LVLVVDDEPRMITFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDIMMPV--MDG 65

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E  R IR+ SQVP+I ++     +  +   + G DD V KP   RE+++R+ A+ RR  
Sbjct: 66  FEALRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELVSRIRAVLRRHY 125

Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
                 +T       + +    R+  V G+   L   E R+L +L+ N G  +    + S
Sbjct: 126 TQPPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLS 185

Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
            ++G  +   E + +  +I+ LR+K+  +      + ++R +GY  
Sbjct: 186 KVWGP-EYRDESHYLRLYITYLRQKIEEDPSNPKYILTERGVGYRF 230


>gi|319652093|ref|ZP_08006213.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
 gi|317396241|gb|EFV76959.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 89/223 (39%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D   +     A    +G  +    + +    L+         +   ++  G    
Sbjct: 4   ILVAEDELAISRVLSAYLQREGFEV--LTAYDGTSALEKFFSHSPQLVILDIMMPGMDGW 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            +   IR  S  P+I ++    +   L   ++G DD ++KP    E++ARV A+ RR   
Sbjct: 62  SVLEKIREKSACPVIMLTALGDIDYKLKGLNTGADDYISKPFIGDEVIARVNAVLRRSAN 121

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
                +  + G + +  D     + G+   L  R+  +L +L     +   + Q+   ++
Sbjct: 122 VYTDEHIIQYGSLTINFDAHTIFLNGKEISLTPRDLSLLLFLAERPNRTFTRDQLIEHVW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220
           G+ D    +  V+  + ++R+ L +    +  + + R +GY  
Sbjct: 182 GM-DYDGSDRAVDLAVKRIRQALTDWPETEGEIRTLRGMGYQF 223


>gi|295091538|emb|CBK77645.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 232

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 9/224 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L++D   + DG       +G  ++   ++E  +  L    + D+  ++  L       
Sbjct: 4   LLLLEDDISLIDGLQYSLNKNGFHVDIARTVEEAKNSLTDINKYDLLILDVTLPD--GTG 61

Query: 61  LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            ++   +R   +Q+P+I ++        +   D G DD V KP    E+ +R+ A+ RR 
Sbjct: 62  FDVCEKVRKQNTQIPIIFLTASDEEVNVIRGLDCGGDDYVTKPFKLGELCSRIRALLRRA 121

Query: 120 KVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
            VS+    N  + G I +        + G +  L   E R+L  L+ N  + V++  I +
Sbjct: 122 GVSSQDKTNILKCGDISIDLLASRVLLNGRILELTNAEYRLLCLLVRNANRVVSRDIILN 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218
            ++      V++N +  +I +LR+K+  +      + + R  GY
Sbjct: 182 DLWDGTGNFVDDNTLSVYIRRLREKVEIDASHPQHLITVRGFGY 225


>gi|212637546|ref|YP_002314071.1| osmolarity response regulator [Shewanella piezotolerans WP3]
 gi|212559030|gb|ACJ31484.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 241

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD   ++        + G  +    + E  + L       +  ++  L   GE  L
Sbjct: 8   ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R     +P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 66  SICRRLRQVGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                           G   +    R+     E   L   E  +L+ L+++  + +++ +
Sbjct: 126 PEVPGAPTQQEEEITFGEFSLNLATREMHHGEEAIALTSGEFAVLKVLVSHPREPLSRDK 185

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  D +  E  ++  +S+LR+ +  +      + +   LGY  
Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEVDAANPRYIQTVWGLGYVF 233


>gi|150378255|ref|YP_001314850.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032802|gb|ABR64917.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 239

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
             ++DD   ++D         G  +    S E    +      D+  ++  +   GE  L
Sbjct: 7   IAVVDDHRDIRDLVGKYLTHQGYRVSVAESGEALRRILEKGAPDLVVLDIMMP--GEDGL 64

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120
            + R +R  +++P+I ++        +   + G DD + KP + RE+LAR+ A+ RR+  
Sbjct: 65  TVCRQLRTTTELPVIFLTAMADGTDRIVGLELGADDYITKPFNPRELLARIRAVLRRVNS 124

Query: 121 --VSNNRAETGPIRVFSDGRD------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                +R +   IR      D          G   PL   E R+L   + + G  +++ Q
Sbjct: 125 LPPQRSRIKAKTIRFDVWELDTGRRELVGRDGISVPLSTAEFRLLSAFLEHPGLVLSRDQ 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           +     G   E+ +   +++ +S+LRKK+  +      + +    GYS 
Sbjct: 185 LLDLTAGRAAESFD-RSIDNQVSRLRKKIESDPKNPSLIKTHWGGGYSF 232


>gi|22123988|ref|NP_667411.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis KIM 10]
 gi|45439938|ref|NP_991477.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|21956728|gb|AAM83662.1|AE013607_11 transcriptional regulator in 2-component system [Yersinia pestis
           KIM 10]
 gi|45434793|gb|AAS60354.1| two component system response regulatory protein [Yersinia pestis
           biovar Microtus str. 91001]
          Length = 240

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G ++    + + E+ L          +   ++ + +  +
Sbjct: 12  ILLVDDDRELTSLLKELLEMEGFNV--VVAYDGEQALSQLDSSIDLLLLDIMMPR-KNGI 68

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           E  + +R H Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 69  ETLKELRQHHQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 128

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S  +          E   +++    ++   +G+   L   E  +L  L  + G+ V++  
Sbjct: 129 SEQQQNAEQGAPTLEVDCLQLNPGRQEASFEGQPLELTGTEFTLLYLLAQHLGQVVSREH 188

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   K G     + R  GY
Sbjct: 189 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPDRKDGLPWFKTLRGRGY 234


>gi|323498483|ref|ZP_08103476.1| putative DNA-binding response regulator [Vibrio sinaloensis DSM
           21326]
 gi|323316372|gb|EGA69390.1| putative DNA-binding response regulator [Vibrio sinaloensis DSM
           21326]
          Length = 224

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 96/223 (43%), Gaps = 7/223 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D +  ++         G +++          +  S   D+  ++  L       +
Sbjct: 3   LLIIEDDSTTREFIAKGLQQHGYTVDQAEDGNSGLMMALSGEYDLVILDRMLPY--LDGM 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   I+A   Q+P++ +S   S++  +D   +G DD + KP    E++ARV  I  R +
Sbjct: 61  KILSAIKATIEQLPVLILSAMDSVEDRVDGLQAGSDDYLIKPFALAELIARVDIIINRTQ 120

Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
                        + V               L  +E +++++ + +  + V++ ++F +I
Sbjct: 121 RQGRPQTSLSYDCLTVDLRAHKVTCHDIELQLQPKEFQLIQHFVEHHEQVVSRMRLFESI 180

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           +  +    + NV++ H++ LR+KL      + + + R  GY +
Sbjct: 181 W-SYHFDPKTNVIDVHVANLRRKLEEAGCQNLLHTVRGAGYVL 222


>gi|317056172|ref|YP_004104639.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448441|gb|ADU22005.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 108/224 (48%), Gaps = 7/224 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
            +L +D   + +  +A+   +  S++  +N L+  +++  +  + +  ++  +   G   
Sbjct: 3   LLLAEDEKELSNALVAVLKHNNYSVDAVYNGLDAYDYIIGAEYDGIV-LDIMMP--GLDG 59

Query: 61  LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118
           L +   IR    Q P++ ++    ++  +   D+G DD + KP    E+LAR+ A+  RR
Sbjct: 60  LTVLERIREKGIQTPVLLLTAKAQVEDRIAGLDTGADDYLTKPFAMGELLARIRAMTRRR 119

Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            + S N  + G + +  +      +     L  +E ++LE LM NR   ++  ++   I+
Sbjct: 120 AEFSPNTLKVGNVTLDRERFVISTKNGETKLGNKEFQVLEMLMLNRNILISTERLMEKIW 179

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222
           G FD   E +VV  +IS +RKKL        + + R +GY+++ 
Sbjct: 180 G-FDAEAEISVVWVYISYIRKKLSAVGADVEIKASRGVGYTLEV 222


>gi|16767325|ref|NP_462940.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56415905|ref|YP_152980.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62182520|ref|YP_218937.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161505430|ref|YP_001572542.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161617190|ref|YP_001591155.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167551449|ref|ZP_02345204.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167991591|ref|ZP_02572690.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232999|ref|ZP_02658057.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237683|ref|ZP_02662741.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244188|ref|ZP_02669120.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263040|ref|ZP_02685013.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168467400|ref|ZP_02701237.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821593|ref|ZP_02833593.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194442670|ref|YP_002043284.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451391|ref|YP_002048063.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194472068|ref|ZP_03078052.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736327|ref|YP_002116983.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250942|ref|YP_002148990.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197264290|ref|ZP_03164364.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364834|ref|YP_002144471.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198245082|ref|YP_002217986.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200388103|ref|ZP_03214715.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204930324|ref|ZP_03221301.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354363|ref|YP_002228164.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859247|ref|YP_002245898.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224585872|ref|YP_002639671.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238912204|ref|ZP_04656041.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16422624|gb|AAL22899.1| response reguator in two-component regulatory system with CpxA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56130162|gb|AAV79668.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62130153|gb|AAX67856.1| response reguator in two-component regulatory system with CpxA,
           regulates expression of protein folding and degrading
           factors (OmpR family) [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|160866777|gb|ABX23400.1| hypothetical protein SARI_03585 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161366554|gb|ABX70322.1| hypothetical protein SPAB_05031 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401333|gb|ACF61555.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409695|gb|ACF69914.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458432|gb|EDX47271.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711829|gb|ACF91050.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630213|gb|EDX48853.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197096311|emb|CAR61912.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197214645|gb|ACH52042.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242545|gb|EDY25165.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289336|gb|EDY28701.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197939598|gb|ACH76931.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605201|gb|EDZ03746.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320728|gb|EDZ05930.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274144|emb|CAR39155.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205323751|gb|EDZ11590.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330025|gb|EDZ16789.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332758|gb|EDZ19522.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336884|gb|EDZ23648.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205341789|gb|EDZ28553.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348222|gb|EDZ34853.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206711050|emb|CAR35422.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224470400|gb|ACN48230.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|261249176|emb|CBG27037.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267996354|gb|ACY91239.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160567|emb|CBW20097.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312915175|dbj|BAJ39149.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088470|emb|CBY98229.1| probable transcriptional regulator ycf27 OmpR-like protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321225352|gb|EFX50410.1| Copper-sensing two-component system response regulator CpxR
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322613178|gb|EFY10122.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619195|gb|EFY16078.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322626061|gb|EFY22873.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626479|gb|EFY23285.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632408|gb|EFY29156.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635110|gb|EFY31831.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642687|gb|EFY39277.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647976|gb|EFY44448.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650726|gb|EFY47127.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322652909|gb|EFY49246.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657224|gb|EFY53504.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662288|gb|EFY58503.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666823|gb|EFY62999.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672093|gb|EFY68208.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675815|gb|EFY71887.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681769|gb|EFY77795.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684036|gb|EFY80045.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322717018|gb|EFZ08589.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323132404|gb|ADX19834.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193308|gb|EFZ78523.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197665|gb|EFZ82798.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323200761|gb|EFZ85832.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207234|gb|EFZ92186.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211436|gb|EFZ96277.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323218518|gb|EGA03226.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220999|gb|EGA05431.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225975|gb|EGA10194.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231655|gb|EGA15767.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236096|gb|EGA20174.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239482|gb|EGA23531.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243924|gb|EGA27935.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249287|gb|EGA33204.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323250470|gb|EGA34353.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258924|gb|EGA42576.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260169|gb|EGA43792.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265288|gb|EGA48785.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270510|gb|EGA53956.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326625777|gb|EGE32122.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629490|gb|EGE35833.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332990888|gb|AEF09871.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 232

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 89/227 (39%), Gaps = 14/227 (6%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L+DD   +      L   +G ++   +  E    L   + + +          G   L
Sbjct: 4   ILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVMMPKKNGIDTL 63

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
              + +R   Q P+I ++   S    +   + G DD + KP + RE++AR+ AI RR   
Sbjct: 64  ---KALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 SNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
           S  +          E   + +    ++    G+   L   E  +L  L  + G+ V++  
Sbjct: 121 SEQQQSSDNGSPTLEVDALSLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           +   + G      +   ++ HIS LR+KL   K G     + R  GY
Sbjct: 181 LSQEVLGKRLTPFD-RAIDMHISNLRRKLPERKDGHPWFKTLRGRGY 226


>gi|115360068|ref|YP_777206.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115285356|gb|ABI90872.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 221

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +     +     G +++          L    R D+  ++A L   G    
Sbjct: 3   ILVVEDDAEIGAAIRSRLTRLGHAVDLETDGSTANSLLRVERFDLVVLDANLP--GLDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR  
Sbjct: 61  TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +N+    G + +    R  E+ G+   L R+E  +LE L +   +  +K ++ + ++ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLF- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F      N VE +++++R+KL+       + + R +GY I
Sbjct: 180 SFGNEPSANAVEQYVTRVRRKLQ--GSSVEIRTARGMGYQI 218


>gi|317499278|ref|ZP_07957551.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893447|gb|EFV15656.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 222

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 51/221 (23%), Positives = 106/221 (47%), Gaps = 5/221 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   +++    L    G  +   +   F+  ++   REDV  I   +        
Sbjct: 5   IMIVEDHEPIRNELKILLSKYGYEIIALD--RFDTVVEDCLREDVDLILLDINLPFYDGY 62

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR  S+VP+I ++   S    L   + G DD V KP + + +LAR++A+ +R + 
Sbjct: 63  YVCRTIREKSEVPIIVVTSRDSEMDELMSINLGADDFVTKPYNTQILLARISAMLKRTQK 122

Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
              N+  +   +++  +      +     L + E RIL  L+ ++   V++ Q+  +++ 
Sbjct: 123 ETVNDSLQYKGLKLQLNNSTVIYKDHEIELSKNEIRILYTLLQHKENIVSRDQLMESLW- 181

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
             +E +++N +  +I+++RKKL      D + +KR  GY I
Sbjct: 182 QSNEFIDDNTLTVNINRVRKKLEAAGLKDFIKTKRGQGYMI 222


>gi|300113904|ref|YP_003760479.1| winged helix family two component transcriptional regulator
           [Nitrosococcus watsonii C-113]
 gi|299539841|gb|ADJ28158.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus watsonii C-113]
          Length = 219

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 105/222 (47%), Gaps = 10/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   + D  + LF   G +++                 D+  ++  L   G   L
Sbjct: 3   LLLVEDNVALADELLPLFKGYGYAVDWRVDGRDALLAVHDESYDMVVLDLGLP--GLDGL 60

Query: 62  ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++ +  RA    +P++ ++   +    L+   +G DD ++KP H  E+L RV A+ RR  
Sbjct: 61  QVLQHWRAEGVTLPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSH 120

Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
             V++ R E G + +  D +      + + L R E R+L   M + GK +++ ++   +Y
Sbjct: 121 GTVNSPRLEAGGLALDEDRQSVWQGDQEYELTRGEFRLLRCFMLHPGKVLSRMELNEHLY 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              +   + NV+E HIS+LR+KL    G   ++++R  GY  
Sbjct: 181 DG-ESERDSNVLEVHISRLRRKL----GDPVIETRRSQGYRF 217


>gi|269103945|ref|ZP_06156642.1| transcriptional regulatory protein CpxR [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163843|gb|EEZ42339.1| transcriptional regulatory protein CpxR [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 229

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 11/225 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +L+DD   +      +   +G  +E  N+ E +   + +A  D+  ++  +        E
Sbjct: 5   LLVDDDTELTALLHDILEMEGFEVEQANNGE-QGLEKINASIDLVLLDVMMP--KMNGTE 61

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           + R +R     P++ ++        +   + G DD + KP   RE+LAR+ AI RR +  
Sbjct: 62  MLRRLREKYSTPVLMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARMRAILRRTQAL 121

Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
           +NR       +   I ++   ++   Q     +   E  +L Y + + GK ++K ++   
Sbjct: 122 DNRVTHGDTIDYQDITIYPGRQEAFCQNRALDVTGTELALLSYFIQHPGKIISKEELSLE 181

Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220
           + G      +   ++ H+S LRKKL  +L   P + + R  GY +
Sbjct: 182 VLGKRLAQFD-RAIDMHVSNLRKKLPERLDDKPRIKTLRGKGYLL 225


>gi|228994221|ref|ZP_04154119.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228765514|gb|EEM14170.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 223

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++I+D A++++         G  ++    +++   +Q    E+   I   +        
Sbjct: 4   IMIIEDDAVIREELQNFLQRYGYDVKA--PIDYNNIMQYVENENADLILLDINLPVFDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R IR +S VP+I ++   +    L   + G DD + KP +   +LAR+  I +R   
Sbjct: 62  YICREIRKNSDVPIIIVTSRDNEVDELMSMNLGADDFITKPYNTEILLARITNILKRTYG 121

Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           S   +N        +         + +   L + E +IL YL+ N+G  V +  +   ++
Sbjct: 122 SSKASNMLSYMDFHLNLSNASVMYKNQAIELTKNEVKILSYLINNKGNIVKREFLMEHLW 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
              D  V+++ +  +I++LRKKL      +P++++R LGY +
Sbjct: 182 -KSDYFVDDSTLTVNITRLRKKLEEIGIENPIETRRGLGYIM 222


>gi|182419345|ref|ZP_02950597.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237666330|ref|ZP_04526315.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376676|gb|EDT74248.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657529|gb|EEP55084.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 230

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           +++DD   ++D        + +++    + +  + L     E V  I   ++      + 
Sbjct: 5   LVVDDEKEIRDAIEIYLRGENLNV--LKAEDGLKALDILEEEKVHLIILDVMMPKLDGIR 62

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
               IR    +P+I +S        +   + G DD + KP +H E++ARV +  RR +  
Sbjct: 63  TCLKIRETENLPIIMLSAKGEDSDKILGLNVGADDYITKPFNHLELVARVKSQLRRYEKP 122

Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176
                  +  +   + + +  +   V+GE       E +IL  L +N GK  +  +I+  
Sbjct: 123 LNVEEGKDIIKVKDLVIDTIAKKITVRGEEIKATATEYKILHLLASNLGKVFSIKEIYEK 182

Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221
           ++        EN V  HI ++R+K+  N    + +     +GY I+
Sbjct: 183 VWEEI-FYKSENTVTVHIRRIREKIEINTKEPEYIKVVWGIGYKIE 227


>gi|152989684|ref|YP_001349576.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150964842|gb|ABR86867.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 236

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 99/226 (43%), Gaps = 12/226 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +        +G+ ++   +         + R D+  ++  L   GE  L
Sbjct: 8   ILIVEDDRRLAELTREYLEGNGLKVDIEANGALAAARILAERPDLVVLDLMLP--GEDGL 65

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R     P++ ++        +   + G DD V KP+  R +LAR+ A+ RR + 
Sbjct: 66  SICRQVRPQFDGPILMLTARTDDMDEVLGLEMGADDYVCKPVRPRVLLARIRALLRRSEA 125

Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173
                      R   G + + +  R+  +      L   E  +L  L AN G+ +++ +I
Sbjct: 126 PETGAPPLDSKRLAFGRLVIDNAMREAWLDEATIELTSAEFDLLWLLAANAGRILSREEI 185

Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218
           F+A+ G+ +   ++  ++  IS++R K+  + +    + + R  GY
Sbjct: 186 FNALRGI-EYDGQDRSIDVRISRIRPKIGDDPMHPRLIKTVRSKGY 230


>gi|332534920|ref|ZP_08410740.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035655|gb|EGI72145.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 230

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +G+ +E  +  +       +   D+  ++  L   G+   
Sbjct: 4   ILLVEDDLGLQQLTKDYLEHNGLEVEVLDRGDEVFNYLENNTPDLMILDVMLP--GKDGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + R +R    +P++ ++        +   + G DD V KP   R +LAR+ A+ RR + 
Sbjct: 62  SVCRQVRDKFTLPILMLTAKGEDFDQVLGLELGADDYVIKPAEPRVLLARINALLRRGQP 121

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
              S+   + G + +    R  ++      L   E  +L  L +N G+ +++  +   + 
Sbjct: 122 IVKSSEELQFGDLVIDKTSRIVKLSDSEIVLTSHEFELLWLLASNAGEVLSREHVHQHMI 181

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218
           G       +  V+  +S++RKKL +       + +    GY
Sbjct: 182 GR-QYDGLDRTVDVRVSRIRKKLGDNSDKPYRIKTVWGQGY 221


>gi|328887722|emb|CAJ69423.2| Two-component response regulator [Clostridium difficile]
          Length = 235

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +  G       +G ++  F++   EE     A+E++  I + +        
Sbjct: 4   ILLLEDDKSLNRGISFKLKKEGYNV--FSAFGIEEAKNIFAKEEICLIISDIGLPDGSGF 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    IR  S V +I ++        +  +D G DD + KP     ++++V A+ +R+  
Sbjct: 62  DFCEEIRKKSDVYIIMLTALDEEVDIVTGYDLGADDYITKPFSLMVLISKVNALMKRVNT 121

Query: 122 SNNRAETGPIRVFSDGRDPEV------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175
             N        +F    + ++      + E   L + E ++L+YLM N  + + K Q+  
Sbjct: 122 VKNYILLVCDDLFFYYIENKLIIRTDDKEEEIILSKTETKLLKYLMENSMQTLTKEQLLE 181

Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219
           +++      V++N +  +I +LR+K+  N      + + R +GY 
Sbjct: 182 SLWDSSGNFVDDNTIAVNIRRLRQKVEKNPSEPKYIKTVRGVGYM 226


>gi|221197319|ref|ZP_03570366.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221203992|ref|ZP_03577010.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221176158|gb|EEE08587.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221183873|gb|EEE16273.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 221

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A +     +     G +++          L    R D+  ++A L   G    
Sbjct: 3   ILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLP--GLDGF 60

Query: 62  ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119
            + R +RA  S  P++ ++   ++   +     G DD + KP  +RE+ ARV A+ RR  
Sbjct: 61  AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             +++    G + +    R  E+ G+   L R+E  +LE L +   +  +K ++ + ++ 
Sbjct: 121 GHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKDELLNQLF- 179

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            F      N VE +++++RKKL        + + R +GY I
Sbjct: 180 SFGNEPSANAVEQYVTRVRKKL--HGSSVEIRTARGMGYQI 218


>gi|169335330|ref|ZP_02862523.1| hypothetical protein ANASTE_01742 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258068|gb|EDS72034.1| hypothetical protein ANASTE_01742 [Anaerofustis stercorihominis DSM
           17244]
          Length = 221

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 104/220 (47%), Gaps = 4/220 (1%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   ++        ++G  +      +    +  +   D+  ++  L   G    
Sbjct: 4   ILVVEDDNKLRGELTLYLKNNGYEVSEILDFKHSVDIILAGNADLILLDITLP--GIDGE 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
            + + +R  S +P+I ++   +    L   + G DD V KP + R ++AR+ A+ +R+  
Sbjct: 62  YICKEVRKSSDIPIIMLTSRNNEMDELLSINYGADDYVTKPYNPRILIARIEALLKRVNK 121

Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
           + ++      +++           +   L + E +IL +L+ N+ + V++ ++   ++  
Sbjct: 122 NFSDVIFYNGLKLNISKSTFSYNDKEIDLSKNELKILHFLLKNKSRIVSRDELMDYLWDN 181

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +E V++N +  +I++LRKKL +    + +++KR  GY I
Sbjct: 182 -NEFVDDNTLTVNINRLRKKLESVELKNFIETKRGQGYII 220


>gi|77460719|ref|YP_350226.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384722|gb|ABA76235.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 227

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   +        G  G +++          L ++   D+  ++  L   G    
Sbjct: 3   ILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLP--GIDGY 60

Query: 62  ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119
            L + +R  A    P+I ++    L   L  F SG DD + KP    E+ ARV A+ RR 
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLVKPFALSELAARVEAVMRRT 120

Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
           +    R  + G +    D  +   +G++  L     ++L  LM      + +  +  A++
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
           G  D+  + + + SH+ +LR+ +        + +   +GY +
Sbjct: 181 G--DDCPDSDSLRSHVHQLRQVIDKPFAKPLLHTVHGVGYRL 220


>gi|15828139|ref|NP_302402.1| two-component response regulator [Mycobacterium leprae TN]
 gi|221230616|ref|YP_002504032.1| two-component response regulator [Mycobacterium leprae Br4923]
 gi|34098418|sp|Q50136|PRRA_MYCLE RecName: Full=Transcriptional regulatory protein prrA
 gi|2440114|emb|CAB16701.1| two-component regulator [Mycobacterium leprae]
 gi|13093693|emb|CAC31078.1| two-component response regulator [Mycobacterium leprae]
 gi|219933723|emb|CAR72220.1| two-component response regulator [Mycobacterium leprae Br4923]
          Length = 233

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 21  DDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLI 76
           + G+ L GF    +++  E L+++      AI   +       + +   +RA  + VP+ 
Sbjct: 24  ERGLRLSGFEVSTAIDGAEALRNATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVC 83

Query: 77  GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIR 132
            +S   S+   +   ++G DD + KP    E++ARV A+ RR       S+     GP+ 
Sbjct: 84  VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETIAVGPLE 143

Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192
           V   GR   V G    L +RE  +L  L  ++   +++ Q+   ++G +D A + NVV+ 
Sbjct: 144 VDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTTVLSRAQLLELVWG-YDFAADTNVVDV 202

Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            I  LR+KL    G   + + R +G+ +
Sbjct: 203 FIGYLRRKLEANSGPRLLHTVRGVGFVL 230


>gi|209693817|ref|YP_002261745.1| osmolarity response regulator [Aliivibrio salmonicida LFI1238]
 gi|208007768|emb|CAQ77889.1| response regulator homolog OmpR [Aliivibrio salmonicida LFI1238]
          Length = 239

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 99/229 (43%), Gaps = 13/229 (5%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +++DD A ++        + G  +    + E  + L +     +  ++  L   GE  L
Sbjct: 7   ILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLP--GEDGL 64

Query: 62  ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119
            + R +R+++ + P++ ++        +   + G DD + KP + RE+LAR+ A+ RR  
Sbjct: 65  SICRRLRSNNNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQV 124

Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172
                     +   E G  R+    R+     E  PL   E  +L+ L+ N  + +++ +
Sbjct: 125 IEAPGAPSAEDKMVEFGEFRLNLGTREMFRNEEPMPLTSGEFAVLKSLVTNMREPMSRDK 184

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220
           + +   G  + +  E  ++  IS+LR+ +  +      + +   LGY  
Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMIEVDSSRPRYIQTVWGLGYVF 232


>gi|197336013|ref|YP_002156198.1| FeuP [Vibrio fischeri MJ11]
 gi|197317503|gb|ACH66950.1| FeuP [Vibrio fischeri MJ11]
          Length = 218

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D   + +  +          E         +  ++   D   ++  L       L
Sbjct: 3   ILVVEDDLRLGEQIVETLESADWVPELSQDGVDALYRATTEEWDAIVLDLGLP--KLNGL 60

Query: 62  ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            + + IR  +   P+I +S   +L   ++  ++G DD + KP    E++AR+ A  RR  
Sbjct: 61  TVLKSIRDENINTPVIILSARDTLSQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179
             ++   + G + + +       Q +   L   E +++ Y M N  K +++T +   IY 
Sbjct: 121 GNASPILKIGDLSLDTRSSKVLWQDQAVSLTALEYKVVAYFMHNPDKVISRTTLVEHIYK 180

Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
             D   + N VE  I ++RKK+      + + + R LGY ++
Sbjct: 181 Q-DFDRDSNTVEVFIGRIRKKI----APNIIKTVRGLGYQLN 217


>gi|327481402|gb|AEA84712.1| transcriptional activator CopR [Pseudomonas stutzeri DSM 4166]
          Length = 227

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 6/223 (2%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++ +D             + G +++   S         S   D+  ++  +   G    
Sbjct: 3   LLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMP--GLDGW 60

Query: 62  ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           E+ R++RA    VP++ ++    ++  +   + G DD + KP    E+LARV  + RR  
Sbjct: 61  EVLRLVRASGNEVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120

Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
            +    + +   ++V    R     G+   L  +E  +LE L+  RG+ + K+ I S ++
Sbjct: 121 ATALQTQLQVADLQVDLLKRRATRAGQRIDLTAKEFALLELLLRRRGEVLPKSLIASQVW 180

Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
            + +   + NV+E  I +LR K+ +      + + R +GY +D
Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKIDDGFEPKLIHTARGMGYMLD 222


>gi|163736175|ref|ZP_02143594.1| two-component response regulator [Phaeobacter gallaeciensis BS107]
 gi|161390045|gb|EDQ14395.1| two-component response regulator [Phaeobacter gallaeciensis BS107]
          Length = 221

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 93/220 (42%), Gaps = 8/220 (3%)

Query: 6   DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65
           +D   +    +      G  ++   +        ++   DV   +          L   +
Sbjct: 3   EDDPEIGTWTVKGLTAAGHVVDWIENGREALLAATTRDYDVLVFDRMTPD--LDGLSALK 60

Query: 66  IIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--- 121
            +R A    PLI ++   +++  ++  ++G DD ++KP    E+LAR+ A+ RR +    
Sbjct: 61  TLRSARITTPLILLTALGAVEDRVEGLEAGADDYLSKPFAMTELLARITALGRRGRAEAA 120

Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180
            +  R     + +    +     G    L  +E R+LE LM ++G+   +  +   ++ +
Sbjct: 121 ETATRLSHRGLDLDLLSQTCACNGTTVLLNPKEFRLLEVLMRSKGRIQTRAMLLERVWDI 180

Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220
            +     +VVE+H+S+LR K+    G + + + R  GY  
Sbjct: 181 -NFDPSTSVVETHMSRLRNKIEKPFGLEFIKTVRGSGYMF 219


>gi|172061243|ref|YP_001808895.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993760|gb|ACB64679.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 232

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 3   VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62
           VLI+D   ++    A   ++ +++    + +      ++ + D+  ++  L       L+
Sbjct: 9   VLIEDEKQIRRFVRAALEEEDIAVFEAETGKQGLIDAATRKPDLVIVDLGLPDT--DGLD 66

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121
           + R +R  S+VP+I +S        +   D+G DD + KP    E+ AR+ A  RR    
Sbjct: 67  VIRELRGWSEVPVIVLSARTQEDEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRNQG 126

Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178
               + +   G + V    R     GE+  L   E R+L  L+ + G+ +   Q+   ++
Sbjct: 127 GANESPKVSFGGVSVDLAMRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220
           G        + +  +++ LR+KL R+    + + ++  +GY +
Sbjct: 187 GPSHVE-SHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|257866986|ref|ZP_05646639.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873320|ref|ZP_05652973.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877062|ref|ZP_05656715.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257801042|gb|EEV29972.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257807484|gb|EEV36306.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811228|gb|EEV40048.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 224

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 7/221 (3%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            ++++D A+++   I          E F + +F + L     ++   I   +        
Sbjct: 4   IMVVEDEAVIRQLIIEELEK--WQFETFGTTDFHQVLTDFEEQEPQLILLDINLPVFDGY 61

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119
              + IR  S+VP+I IS   +    +   + G DD V KP     ++A++ A+ RR   
Sbjct: 62  YWCQKIREASKVPIIFISSRNTNMDMIMAMNMGADDFVTKPFEIDVLIAKINALLRRSYN 121

Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177
             + S+       + +  D     + GE   L + E R+L  LM N GK +++ ++  A+
Sbjct: 122 YVESSSETLVHNGLTLNIDNSSMYINGESIDLSKNEYRLLYILMKNHGKILSREKLLRAL 181

Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           +   +  V++N +  +I++LR+K+        +++K   GY
Sbjct: 182 WD-DERFVDDNTLTVNINRLRRKIEQAGMNGYIETKVGQGY 221


>gi|188588940|ref|YP_001919844.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|188499221|gb|ACD52357.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
          Length = 229

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 91/226 (40%), Gaps = 11/226 (4%)

Query: 2   FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
            +L++D   ++         +   +    +   E+ L+++ +  +      ++  G    
Sbjct: 4   ILLVEDEESIRGFIKINLKRNDFEV--IEAECGEDGLKAAEKFSIDLAVLDVMLPGIDGF 61

Query: 62  ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
           ++   +R    ++ +I ++        +   + G DD + KP +  E++ R+ AI RR  
Sbjct: 62  KVCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTG 121

Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174
             +   E        P  +    +          +  +E  +++  + N  K  ++ ++ 
Sbjct: 122 DESQVKENIDKLIREPFIIDLYSQKLFKDNIEIDVTPKEYLLMKLFLKNPNKAFSRDELL 181

Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219
           + I+G +D   +  +++ +I +LR K+ +     + +++    GY 
Sbjct: 182 NLIWG-YDYFGDPKLIDVNIRRLRSKIEDTPSEPEFIETIWGKGYR 226


>gi|162295949|gb|ABX83921.1| AdeR [Acinetobacter baumannii]
          Length = 247

 Score =  207 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 1   MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60
           + ++++D   + D        +G+S+    + +    L +S   D+  ++  L       
Sbjct: 14  IILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPE--LNG 71

Query: 61  LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120
            E+   IR  +Q P+I ++        +     G DD V KP +  E++ARV A+ RR +
Sbjct: 72  WEVLNKIRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQ 131

Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQ 172
            +N           I + +D     +  E    +  L   E +I+ +++    K   + +
Sbjct: 132 FANKATNKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGE 191

Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221
           + +    + D    E  V+SH+SKLRKKL  +  F  + + R +GY +D
Sbjct: 192 LMNQC--MNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.195    0.679 

Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,807,722,984
Number of Sequences: 14124377
Number of extensions: 343000321
Number of successful extensions: 1197944
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 59151
Number of HSP's successfully gapped in prelim test: 41900
Number of HSP's that attempted gapping in prelim test: 951597
Number of HSP's gapped (non-prelim): 111676
length of query: 223
length of database: 4,842,793,630
effective HSP length: 134
effective length of query: 89
effective length of database: 2,950,127,112
effective search space: 262561312968
effective search space used: 262561312968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 80 (34.9 bits)